##maf version=1 scoring=multiz.v7 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/danRer1/chr17_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2fr1/chr17_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/fr1/chr17_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2/chr17_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/galGal2/chr17_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1/chr17_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/canFam1/chr17_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3/chr17_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/rn3/chr17_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5/chr17_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/mm5/chr17_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1/chr17_random.maf - a score=95529.0 s hg17.chr17_random 0 186 + 2618010 GAATTCAATCCATGGACTCCAGAGCCCCAAGTCTCCTTTAGGCCGACCTGAGAGCTTGCTCCAGTCTAATACCCTGATGTAAGC------CCAGGACTGGGGTGGGAGCCAAAACTTTAGGCCCAGCTCTCTGAAACTGGAACTTCAACCAATTTCCGTCTTATTTATTGGTAGCCCTTAACACCTAAATCT s panTro1.chr19_random 38090629 186 - 57627672 GAATTCAATCCATGGACTCCAGAGCCCCAAGTCTCCTTTAGGCCGACCTGAGAGCTTGCTCCAGTCTAATACCCTGATGTAAGC------CCAGGGCTGGGGTGGGAGCCAAAACTTTAGGCCCAGCTCTCTGAAACTGGAACTTCAACCAACTTCCGTCTTATTTATTGGTAGCCCTTAACACCTAAATCT s mm5.chr11 101239653 181 + 121648857 GAATTCAATCCATGGACTTCAGAGTCCCAAGTCCCCTTTGGGCCGACCTGAGAGCTTGCTGCAGTCTAACACCCTGATGTAAGTGCAAGGCCAGGGCTGGGGTGTG-------GCTTCCCATCCAGCTCTCTGACACAGGAATGTTAA-CACCCTTTGT-TTACCTATT-GTGTCTCCTAGCACCC-ACTGT s rn3.chr10 90602917 183 + 110733352 GAATTCAATCCATGGACTCCAGAGTCCCAAGTCGCCTTTGGGTCGACCTGAGAGCTTGCTGCAGTCTAACACCCTCATGTAAGTCCAGGGCCAAGGCAGGGATGTG-------GCCTCCGGTCCAGCTCTCTGAAACAGGGATTTTAG-CTGCCCTTGCTTTCCCTGCT-GTGTCTCCGAGCACCCACCTGT s canFam1.chr9 41044294 182 - 53642819 GAGTTCCATCCATGGACTCCAGAGCCCCAGGTCCCCTCTAGGCCGATCCGAGAGCCTGCTGCAGTCAAACACCCTGATGTAAGC------CCAAGGGTGGGGCA----CCTAGGCTGGAGGTCCAGCCTTCCGAAACCAGAACTTCAATCAGGTTTTCTCTTACTTATCTGCAGCCCCTAACACCCAGACTC a score=13617.0 s hg17.chr17_random 186 19 + 2618010 TTAAAACTTTCCATTATCT s panTro1.chr19_random 38090815 19 - 57627672 TTAAAACTTTCCATTATCT s mm5.chr11 101239834 19 + 121648857 TTTAAGCTTCCCATTGTCT s rn3.chr10 90603100 19 + 110733352 TTTAAGCTTCCCATTGTCT s canFam1.chr9 41044692 19 - 53642819 TTAAAACTTCCCATTCTCT a score=1673.0 s hg17.chr17_random 205 11 + 2618010 GGTCTTAGTAt s panTro1.chr19_random 38090834 11 - 57627672 GGTCTTAGTAT s canFam1.chr9 41044711 10 - 53642819 -GATCTAGCAT a score=57097.0 s hg17.chr17_random 216 621 + 2618010 ttttt-----------------gtttgtttgttttttgagacagagtcttgctctgtcacccaggcggtagtgcagtggtgcgatctcggctcactgccagctctgctttcgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaagcacccgccaccacgcctggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcttgacctcgtgatccgcccgccttggactcccaaagtgttgggattacaggcatgagccacacagcacccggcttttttttttttttttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcatgatctaggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctaggattacaggtgcatgccaccatgcccgg-ctaatttttgtattttttcagtagagatggggtttcatcctgttggtcaggctggtctcgaactcctgacctcatgaatccgcccgccttggcctcccaaaatggtgagataacaggtgtgagccactgcgcctgCCTGGCGTGGTCTTAGTATTAT s panTro1.chr19_random 38090845 639 - 57627672 TTTTTTTttttgttttttttttgtttgtttgttttttgagacagagtcttgctctgtcacccaggcggtagtgcagtggtgcgatctcggctcactgcaagctctgccttcgggtgcacgccattctcctgcctcagcctcctgagtagctgggactacaagcacccgccaccacgcctggctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcttgacctcgtgatccgcccgccttggactcccaaagtgttgggattacaggcatgagccacacagcacccggcttttttttttttttttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggcatgatctaggctcactgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctaggattacaggtgcatgccaccatgcccgggctaatttttgtattttttcagtagagacggggtttcatcctgttggtcaggctggtctcgaactcctgacctcatgaatccgcccaccttggcctcccaaaatggtgagattacaggtgtgagccactgcgcctgCCTGGCGTGGTCTTAGTATTAT a score=4281.0 s hg17.chr17_random 837 19 + 2618010 TAAAGGGTG-GTTTGGTAGt s panTro1.chr19_random 38091484 20 - 57627672 TAAAGGGTGTGTTTGGTAGt s canFam1.chr9 41044723 19 - 53642819 TAAAGGGTG-GTTTGATAGT a score=29704.0 s hg17.chr17_random 856 313 + 2618010 tttttgtttgttttgtttttgagacggagtcttggagtctcgcctgttgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccacctcctgggttcacgccattctcctgcctcagcctcccgagtaactgggactacaggtgcccgccaccacacccagctaattttttgtattttttagtagaaacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctatctgccttggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcctggccAAGT s panTro1.chr19_random 38091504 313 - 57627672 tttttgtttgttttgtttttgagacggagtcttggagtctcgcctgttgcccaggctggagtgcaggggcgcgatctcggctcactgcaagctccacctcctgggttcacgccattctcctgcctcagcctcccgagtaactgggactacaggtgcccgccaccacacccagctaattttttgtattttttagtagaaacagggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccatctgccttggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcctggccAAGT a score=-31.0 s hg17.chr17_random 1168 1 + 2618010 T s danRer1.chr3 17315445 1 - 31142523 C a score=1622.0 s hg17.chr17_random 1169 8 + 2618010 TTCGTAGT s panTro1.chr19_random 38091817 8 - 57627672 TTCGTAGT s rn3.chr10 90603325 8 + 110733352 TCAGGGGT s danRer1.chr3 17315446 8 - 31142523 TTTACAGT a score=28562.0 s hg17.chr17_random 1177 172 + 2618010 TATTTTTGACACTT---------GTTTTGTTTCCTTCTTCAGAAAGATAGAAACCACTAA-AGTTCAAAATGGCGGGGT---CCC-----TCTCTT-CATTGGAGGCAATCTGGAA---TTGAAGCAAAAGGAACAAATGTGTTAAAAGCCTGACTCTCTAGGTGTTGTATTTATAGGCCCTTTTAATTACT---------------CT s panTro1.chr19_random 38091825 172 - 57627672 TATTTTTGACACTT---------GTTTTGTTTCCTTCTTCAGAAAGATAGAAACTGCTAA-AGTTCAAAATGGCGGGGT---CCC-----TCTCTT-CATTGGAGGCAATCTGGAA---TTGAAGCAAAAGGAACAAATGTGTTAAAAGCCTGACTCTCTAGGTGTTGTATTTATAGGCCCTTTTAATTACT---------------CT s mm5.chr11 101239872 170 + 121648857 TATTTTAGACACTC--------AGCTTTGATGCCTCATTCAGAAAGCAAGAAACTAACAA-GGCTTAGAACAGGGATAA---TTC-----AGACTT-TTCTGGAGGCAGTCTGGCAGGGTTGGAAC-CAAGAAGCAAG-----------------TCTCCA---GTTATATTTATGAACACTTGTAATTACCCTATATTTATGGACACT s rn3.chr10 90603333 160 + 110733352 TATTTTTGACCCTC--------AGCTTTGATGCCTCATTCAGAAAGCAAGAAACTAATAA-GGCTTAGAACAGGGATAA---TTCAGACTTCTCTT-TTCTGGAGGCAGTCTGGCAGGGTTGGAAC-CAAGGAGCAAA-----------------TCTCCA---GTTGTATTTATGAACACTTGCAGTTACC---------------CT s canFam1.chr9 41044742 124 - 53642819 CATTGTTGACACTT--------------------------------AGAGCAGCCAATGA-GGTTCCATACTGGCTGATATGACC-----TTTCTT-CACTGGAGGCAGTTGGGAT---TTGAAGA----------------------GCCTGGCTCTCCAGTTCTCTTATTTATGGACC------ATTACT---------------CT s danRer1.chr3 17315454 156 - 31142523 TTTATTTTACATTTGATTATTCGATTTCACCTCTATCTTC-------------CCAATAATAATCTAGAATAATCGGCA---CAA-----TCTTTCATAATAATGTCAATCAGTCT-----------AAATGAACAAACTCTTTACAAATCGAGCTATTCA-ATATAATATT-----GCAATATAAATTACA---------------GT a score=5046.0 s hg17.chr17_random 1349 35 + 2618010 TACCATGACTTTTTTAGCTCAGGAGTGAGACCTAT s panTro1.chr19_random 38091997 35 - 57627672 TACCATGACTTTTTTAGCTCAGGAGTGAGACCTAT s mm5.chr11 101240042 25 + 121648857 TATAATCACCCTTTAGGC----------AGCGTAT s canFam1.chr9 41044866 35 - 53642819 TACCAAAGCTTTTTCACTTCAGGAGTGAGAtttgt s danRer1.chr3 17315610 35 - 31142523 TAAAAAATTTTTGCAATGTCAAATTTTAAAAATAT a score=0.0 s hg17.chr17_random 1384 7 + 2618010 CCTCTGT a score=-1747.0 s hg17.chr17_random 1384 7 + 2618010 CCTCTGT------------------------------- s panTro1.chr19_random 38092032 7 - 57627672 CCTCTGT------------------------------- s mm5.chr11 101240067 6 + 121648857 -CTTTGT------------------------------- s canFam1.chr9 41044901 37 - 53642819 -ctttttattttttttaagattttatttttaattgtgg a score=1830.0 s hg17.chr17_random 1391 16 + 2618010 --------TTTGT---------TTTATTGTTTT s panTro1.chr19_random 38092039 16 - 57627672 --------TTTGT---------TTTATTGTTTT s mm5.chr11 101240073 25 + 121648857 --------TTTATGACCTGGAATTTGATCTTGT s rn3.chr10 90603533 16 + 110733352 --------TTTGT---------TTTATGGCCTT s canFam1.chr9 41044938 16 - 53642819 --------tttgt---------ttttgtgtttt s danRer1.chr3 17315645 16 - 31142523 TATGCAGCTCTAA---------TTT-------- a score=-1000.0 s hg17.chr17_random 1407 23 + 2618010 AAGTTTGTCAGAAAATTTATTGT s panTro1.chr19_random 38092055 23 - 57627672 AAGTTTGTCAGAAAATTTATTGT s mm5.chr11 101240098 23 + 121648857 GTGTGTGTATGTGTGTGTGTGTG s rn3.chr10 90603549 21 + 110733352 TGTTTTAT--GGAATTTGAGTGT s danRer1.chr3 17315661 23 - 31142523 CAATATATTTTAATATGTATGTT a score=2927.0 s hg17.chr17_random 1430 17 + 2618010 TTCTAATATGTGGTCCT s panTro1.chr19_random 38092078 17 - 57627672 TTCTAATATGTGGTCCT s mm5.chr11 101240121 17 + 121648857 TCTGGACATGTGTGCCT s danRer1.chr3 17315684 17 - 31142523 TTTAAAAGTGTTACTTT a score=-429.0 s hg17.chr17_random 1447 5 + 2618010 ATACT s danRer1.chr3 17315701 1 - 31142523 A---- a score=48.0 s hg17.chr17_random 1447 5 + 2618010 ATACT s panTro1.chr19_random 38092095 5 - 57627672 ATACT s mm5.chr11 101240255 5 + 121648857 ACCTA a score=2332.0 s hg17.chr17_random 1452 9 + 2618010 AGTAATATC s panTro1.chr19_random 38092100 9 - 57627672 AGTAATATC s mm5.chr11 101240260 9 + 121648857 AACAGTGTT s rn3.chr10 90603740 9 + 110733352 AATAGTGTT s danRer1.chr3 17315702 9 - 31142523 AGTCAAAGT a score=3288.0 s hg17.chr17_random 1461 62 + 2618010 AGTATTATTTTTAAGGCAAATGGGTTAGCACA---TTTTCAAGAG----TCACAGTC---------------AGACTCTCAAGC-------- s panTro1.chr19_random 38092109 62 - 57627672 AGTATTATTTTTAAGGCAAATGGGTTAGCACA---TTTTCAAGAG----TCACAGTC---------------AGACTCTCAAGC-------- s mm5.chr11 101240269 44 + 121648857 AGTA-----TTTAAGTCAAGTGTATTAGTACACCCTTCTCTGTAG----TCAC--------------------------------------- s rn3.chr10 90603749 44 + 110733352 AGTA-----GTTAAGTCAAGTGTATTAGTATCCGCTTATCTGGAG----TCAC--------------------------------------- s canFam1.chr9 41046470 58 - 53642819 AGTAGTAT-TTTTAGGCAAATGCATTAGTACA------TCAAGAG----TTACTCTC---------------AGACTCTTGAGC-------- s danRer1.chr3 17315711 82 - 31142523 AG-------ATTAAAAGATAACCACTTGCAGA---CTTTCAACAGAAGCCCACAATCACTTCAAAATGTGCTAGTCTCACAAAGAACCCCCC a score=53060.0 s hg17.chr17_random 1523 90 + 2618010 TAGTGTGA------GGTATTCAGAAGCCTTCACACCCAACAGCAA--GTGAC-----TAAGCA-TCTGAATTTCT----GTTCAGGCTCCCTTTGCAGCCCTGTACCT s panTro1.chr19_random 38092171 90 - 57627672 TAGTGTGA------GGTATTCAGAAGCCTTCACACCCAACAGCAA--GTGAC-----TAAGCA-TCTGAATTTCT----GTTCAGGCTCCCTTTGCAGCCCTGTACCT s mm5.chr11 101240313 88 + 121648857 -AGTGTGG------CATGTTTGGAGGCCATTACA-CCAGTAGCAA--GTGAC-----TAAGCA-TCTGCATCTCT----GTCCAGGCTTCCTTTGCAGCCCTGTGCCC s rn3.chr10 90603793 88 + 110733352 -AGTGTGA------CACGTTCAGAGGCCATCACA-CCAGTCGCAA--GTGAC-----TAACCG-TCTGCATCTCT----GTCCAGGCTTCCTTTGCAGCCCTGTGCCC s canFam1.chr9 41046530 85 - 53642819 TAGGGTTA------AATATTCAGAAGCCATCATACCCAACA-CAA--GTGAC-----TA-----TCTGAATTTCT----GTTCAGGCTCCCTTTGCAGCCCTGTGCCC s fr1.chrUn 104598833 86 - 349519338 TATTGACA------AGTGTTAAAATGTTTTTATG-ACGGGAGGAGTCGTGAC-----TTGACA------ATCTTT----GTGCAGGCGGCCAAAACGTCCATGTCCCC s danRer1.chr3 17315793 104 - 31142523 TACTGTAATTCTGTAAATTACGGAAGTGTTTAAA--ATGCAGAGA--GTGATAAAAATAAGCAATTTTAACCTTTTTGGTTGCAGTCGTCCTAAACGTCCATGTCCAC a score=230298.0 s hg17.chr17_random 1613 147 + 2618010 CCGTTATGCCAATGCTCAGTGCAGCATTTGTGGATGAGAATTTGCCTGATGGGACTCACCTTCAGCCAGGAACCAAGTTTATCAAACACTGGAGGATGAAAAATACAGGAAATGTAAAGTGGAGTGCAGACACAAAGGTAATT-----TTTC- s panTro1.chr19_random 38092261 147 - 57627672 CCGTTATGCCAATGCTCAGTGCAGCATTTGTGGATGAGAATTTGCCTGATGGGACTCACCTTCAGCCAGGAACCAAGTTTATCAAACACTGGAGGATGAAAAATACAGGAAATGTAAAGTGGAGTGCAGACACAAAGGTAATT-----TTTC- s mm5.chr11 101240401 147 + 121648857 CAGTTATGCCAACACTCAGTGCAGCATTTGTGGATGAGAATTTGCCTGATGGGACTCATCTTCAGCCAGGAACCAAGTTTATTAAACACTGGAGGATGAAAAACACGGGGAATGTGAAGTGGAACACAGACACAAAGGTACGT-----TTTC- s rn3.chr10 90603881 143 + 110733352 CAGTTATGCCAACACTCAGTGCAGCATTCGTGGATGAGAATTTGCCTGATGGGACTCATCTTCAGCCAGGAACCAAGTTTATCAAACACTGGAGGATGAAAAACACAGGGAATGTGAAGTGGAGCGCAGACACAAAGGTACGT---------- s canFam1.chr9 41046615 149 - 53642819 CAGTTATGCCAACCCTCAGTGCAGCATTTGTGGATGAGAATTTGCCCGATGGGACTCATCTTCAGCCAGGAACCAAGTTTATCAAGCACTGGAGGATGAAAAATACAGGAAATGTCAAGTGGAGTGGAGACACAAAGGTAATT---TTTTTC- s galGal2.chr27_random 704785 147 - 721164 CAGTTGTCCCAACATTAAGTGCAGTTTTTGTGGATGAGAATTTGCCAGATGGGACTCGCTTGCAGCCAGGCACAAAGTTCATCAAGCACTGGCGAATGAAAAATACTGGTAATGTGGAATGGAGCTCAGACACAAAGGTAGCT-----TTCC- s fr1.chrUn 104598919 152 - 349519338 TGGTGGTTCCAGCTATGATGGCTGCATTTTTGGATGAAAATCTTCCTGATGGGACCCGACTGCGCCCTGGTACAAAGTTTATCAAGTACTGGAAGATGAGGAACACCGGAACAGTCAGCTGGAATGCTGACACAAAGGTAAACAAAGATGGC- s danRer1.chr3 17315897 148 - 31142523 TAGCTGTGCCAGCCATGACAGCTCTGCTGCTGGATGAAAACCTGCCTGACGGGTCACGTCTGCGTCCTGGGACCAAGTTTATCAAATACTGGAAAATGAAGAACAGTGGCAGAGTTTGCTGGGACTCAGAGACCAAGGTACAC-----TCTTC a score=-11456.0 s hg17.chr17_random 1760 6 + 2618010 -------------------------------------------------------CCACAA--- s panTro1.chr19_random 38092408 6 - 57627672 -------------------------------------------------------CCACAA--- s mm5.chr11 101240548 6 + 121648857 -------------------------------------------------------CCTCTG--- s rn3.chr10 90604024 5 + 110733352 --------------------------------------------------------CCCCA--- s canFam1.chr9 41046764 6 - 53642819 -------------------------------------------------------CCCCAC--- s fr1.chrUn 104599071 6 - 349519338 -------------------------------------------------------CCACAA--- s danRer1.chr3 17316045 64 - 31142523 AacacacatatatatacacatacgcacgcatgcacgcacgcgcacacacaaacacacacaATAA a score=6394.0 s hg17.chr17_random 1766 57 + 2618010 AATGCAAAGATGAGGT----GATTTGAAGTGGCAGAGTGCTC-AGCTGACAAGCTTGCTTTC s panTro1.chr19_random 38092414 57 - 57627672 AATGCAAAGATGAGGT----GATTTGAAGTGGCAGAGTGCTC-AGCTGACAAGCTTGCTTTC s mm5.chr11 101240554 46 + 121648857 AGGGTTAAGACGCG------GATGTGCAATAGCAAAGGGCGC-ACCTGACAAG--------- s rn3.chr10 90604029 46 + 110733352 AATGTAAAAACGGG------GATAGGCAGGAGCAGAAAGCAC-AGCTGACAAG--------- s canFam1.chr9 41046770 55 - 53642819 AGAATAAAGATGAGGT----AATTTGAAGTGGC--AGTGCTC-AGCTGACAAGCTGTTTTTT s fr1.chrUn 104599272 60 - 349519338 AATGAAGGGACAAGGTAAAGAATTTG--GTTAAAACATGCACTGGCTGTGCATCTTGCCTTT s danRer1.chr3 17316109 22 - 31142523 ---------------------------------------CAA-ACCTGCAAAACTAATTTTC a score=314109.0 s hg17.chr17_random 1823 227 + 2618010 TCTTCTTACTGTTCT--TTTCAGCTCAAGTTCATGTGGGGAAACCTGACTTTGGCTTCCACAGAAA---AGAAGGATGTTTTGGTTCCCTGCCTCAAGGCCGGCCATGTGGGA----------------------------GTTGTATCTGTGGAGTTCA---------------------------------------------------------TTGCCCCAGCCTTGGAGGGAACGTATACTTCCCATTGGCGTCTTTCTCACAAAGGCCAGCAATTTGGGCCTCGGGTCTGGTGCAGTATCATAGTAGATCC s panTro1.chr19_random 38092471 227 - 57627672 TCTTCTTACTGTTCT--TTTCAGCTCAAGTTCATGTGGGGAAACCTGACTTTGGCTTCCACAGAAA---AGAAGGATGTTTTGGTTCCCTGCCTCAAGGCCGGCCATGTGGGA----------------------------GTTGTATCTGTGGAGTTCA---------------------------------------------------------TTGCCCCAGCCTTGGAGGGAACGTATACTTCCCATTGGCGTCTTTCTCACAAAGGCCAGCAATTTGGGCCTCGGGTCTGGTGCAGTATTATAGTAGATCC s mm5.chr11 101240600 226 + 121648857 -CATCCTCCTGTTCC--TTTCAGCTCAAGTTCATGTGGGGAAACTTGACTCTGGCTTCTACAGAGA---AGAAAGATGTTTTGGTTCCCTGCTTGAAGGCTGGCCACGTTGGG----------------------------GTCGTGTCTGTGGAGTTCA---------------------------------------------------------TCGCTCCAACCTTGGAGGGGACATACACTTCGCACTGGCGTCTCTCTCACAAAGGCCAGCAGTTTGGGCCTCGGGTTTGGTGCAGTATCATAGTGGATCC s rn3.chr10 90604075 225 + 110733352 -CTTCTTCCTGTTC---TTTCAGCTCAAGTTCATGTGGGGAAACTTGACTCTGGCTTCTACAGAGA---AGAAGGATGTTTTGGTTCCCTGCTTGAAGGCTGGACACATCGGG----------------------------GTGGTGTCTGTGGAGTTCA---------------------------------------------------------TCGCCCCAACCTTGGAGGGGACATACACTTCGCATTGGCGTCTCTCTCACAAAGGCCAGCAGTTTGGGCCTCGGGTCTGGTGCAGTATCATAGTGGATCC s canFam1.chr9 41046825 227 - 53642819 TCTTGTCCCTGTTCT--TTTCAGCTCAAGTTCATGTGGGGAAACCTAACCTTGGCTTCTACAGAAA---AGAAAGACGTTTTGGTTCCCTGCCTGAAGGCCGGCCATGTAGGG----------------------------GTGGTGTCTGTGGAGTTCA---------------------------------------------------------TTGCCCCAGCTTTGGAGGGAACATATACTTCCCATTGGCGTCTTTCTCACAAAGGCCAGCAGTTTGGACCTCGGGTCTGGTGCAGTATCATAGTGGATCC s galGal2.chr27_random 705352 229 - 721164 TTTTTTGCCTGTTTCTATTTCAGCTGAAACTTATGTGGGGAAATCTCACCTTGGCATCTTCTGAGA---AAAAGGATGTGTTGGTACCATCCATACCAACGGGGCAAGTAGGA----------------------------ACTGTTTCAGTTGAGTTTG---------------------------------------------------------TGGCTCCCAATATAGAAGGAACTTATACCTCTCACTGGAGGCTGTCGCACAGAGGGGAACAGTTTGGACCTAGAATCTGGTGCAGTATTGTTGTGGATCC s fr1.chrUn 104599333 310 - 349519338 CCTTTT-----TTTC--CTGCAGCTGAAGTTCATGTGGGGAAACTTGGCAGTGGGATCTGGAGATCGTTGGAGAGAAGTGTCAGTTCCCTTCCTCCAGCCAGGACAGGTGAGGTGTCTGCACAGAGGCGGTCTGGATTGTTGCTGAACCTGTACATTTAAACGCTCTGCTGACGCTGTTCCTCCTCTTCAAGGTCGGCATTGTGAACGTAGCACTGGTTGCTCCCTCTGTGGAGGGATCCTACACCTCCCACTGGCGTCTGGCCCACGCCGGGGAGCAGTTTGGACCCAGGGTTTGGTGCAGCATTGTAGTGGATCC s danRer1.chr3 17316131 228 - 31142523 --TTTTTTTTTTTTA--CTTCAGTTGAAGTTTATGTGGGGGAATCTGGCAGTGGGCTCTGGAGAAAGATGGCGGGAGGTGCCAGTGCCCACACTACAGCCAGGTCAGGTGGGT----------------------------GTGGTCAGTGTGGCTCTTT---------------------------------------------------------GTGCTCCGACGATAGAGGGCACTTACACGTCCCATTGGCGCCTAGCTCACAGAGGGGAGCAGTTTGGACCACGTGTTTGGTGCAGCATCGTTGTGGATCC a score=3873.0 s hg17.chr17_random 2050 11 + 2618010 TTTCCC---------CTCCG s panTro1.chr19_random 38092698 11 - 57627672 TTTCCC---------CTCTG s mm5.chr11 101240826 11 + 121648857 TTTTCC---------TTCCT s rn3.chr10 90604300 11 + 110733352 TTTTCC---------TTCCT s canFam1.chr9 41047052 11 - 53642819 TTTCCC---------CTCCA s galGal2.chr27_random 705581 20 - 721164 CTCGCCAGCTACTGACTCTT s fr1.chrUn 104599643 11 - 349519338 CCTGGC---------CCCAG a score=56271.0 s hg17.chr17_random 2061 84 + 2618010 AAGAGAGCCCTGATAACATTGAAAAGGGCATGATCAGCTCAAGCAAAACTGATGATCTCACCTGCCAGCAAGAGGTGAGCA-TTG s panTro1.chr19_random 38092709 84 - 57627672 AAGAGAGCCCTGATAACATTGAAAAGGGCATGATCAGCTCAAGCAAAACTGATGATCTCACCTGCCAGCAAGAGGTGAGCA-TTG s mm5.chr11 101240837 85 + 121648857 CTGAGAGCCCTGATAATGTTGAAGGGGACAGGATCAGCTCAAGCAAAGCTGACGATTTCTCCTGTGAGCAAGAGGTGAGCACTTG s rn3.chr10 90604311 84 + 110733352 CTGAGAGCCCTGTTAACCTTGAAAGGGATGGGATTAGCTCAAGCAAAGCTGATGACTTCACCTGTGAGCAAGAGGTGAGCA-CTG s canFam1.chr9 41047063 84 - 53642819 CAGAGAGCCCTGAGAACATTGAAAAGGGCATGGTTCACTCAAGCAAAGCCGATGAGCTCTCCTGCCAGCAAGAGGTGAGCA-TTG s galGal2.chr27_random 705601 69 - 721164 TAGAAAGCA--------ATTGGAAGGATTTTGAT----TCACGTCATAAAGGTGATACTTCCAGTAACAAACAGGCAAGTA---- a score=259.0 s hg17.chr17_random 2145 3 + 2618010 ACT s panTro1.chr19_random 38092793 3 - 57627672 ACT s mm5.chr11 101240922 3 + 121648857 GGC s rn3.chr10 90604395 3 + 110733352 AGC s galGal2.chr27_random 705670 3 - 721164 ACT a score=-619.0 s hg17.chr17_random 2145 39 + 2618010 ACTGACAGGCTTTGGCCTAGTATCCAAATCTTAGTTAGA s galGal2.chr27_random 705670 22 - 721164 ACT-----------------CATCCACTTTTGGGGCACT a score=1281.0 s hg17.chr17_random 2148 17 + 2618010 GACAGGCTTTGGCCTAG s panTro1.chr19_random 38092796 17 - 57627672 AACAGGCTTTGGCCTAG s mm5.chr11 101240925 17 + 121648857 CATTGGCCCAGGCCCAG s rn3.chr10 90604398 11 + 110733352 TGTTGGCCCGG------ a score=1806.0 s hg17.chr17_random 2165 9 + 2618010 TATCCAAAT s panTro1.chr19_random 38092813 9 - 57627672 TATCCAAAT s rn3.chr10 90604410 9 + 110733352 CTACCACAT s galGal2.chr27_random 705673 9 - 721164 CATCCACTT a score=-23.0 s hg17.chr17_random 2174 10 + 2618010 CTTAGTTAGA----- s panTro1.chr19_random 38092822 10 - 57627672 CTTAGTTAGA----- s galGal2.chr27_random 705682 10 - 721164 -----TTGGGGCACT a score=2094.0 s hg17.chr17_random 2184 12 + 2618010 GAGGAGATGGCT s panTro1.chr19_random 38092832 12 - 57627672 GAGGAGATGGCT s canFam1.chr9 41047147 12 - 53642819 GAAGGGGAGACT s galGal2.chr27_random 705692 12 - 721164 GGTGAATTGTCC a score=11382.0 s hg17.chr17_random 2196 61 + 2618010 -AAAACTAAAAGAACCCACTCATAGCTGGTTGTT-TTCCAGAAACCTTG-AAAGGTTAGCATCT s panTro1.chr19_random 38092844 61 - 57627672 -AAAACTAAAAGAACCCACTCATAGCTGGTTGTT-TTCCAGAAACCTTG-AAAGGTTAGCATCT s rn3.chr10 90604543 62 + 110733352 -GAATGTAAAAGAACTCACTGGTAGCTTGTTATTCTTGCAGATTTCCTG-ACAGTTTACTGTTT s canFam1.chr9 41047159 63 - 53642819 -AAAGCTACAACAGCCCTCTCACAGCTGGTCGTTCCTCCAGAAATCAGGAAAAGGGTAGCTCCT s galGal2.chr27_random 705704 44 - 721164 GATAGTTTGAAGAGTATAC---------ATTGTT----------CTCTG-CAATGGTGTTGTAT a score=1681.0 s hg17.chr17_random 2257 3 + 2618010 CCC s panTro1.chr19_random 38092905 3 - 57627672 CCC s rn3.chr10 90605107 3 + 110733352 TTC s canFam1.chr9 41047222 3 - 53642819 CCC s galGal2.chr27_random 705748 3 - 721164 TCC a score=0.0 s hg17.chr17_random 2260 14 + 2618010 CCCGCCCCAACACA a score=-238.0 s hg17.chr17_random 2260 4 + 2618010 CCCG s panTro1.chr19_random 38092908 4 - 57627672 CCCG s rn3.chr10 90605110 3 + 110733352 TCC- s canFam1.chr9 41047225 4 - 53642819 CCTA a score=1611.0 s hg17.chr17_random 2264 7 + 2618010 CCCCAAC s panTro1.chr19_random 38092912 7 - 57627672 CCCCAAC s mm5.chr11 101241725 7 + 121648857 CCTCTAT s rn3.chr10 90605113 7 + 110733352 CTACAAT a score=0.0 s hg17.chr17_random 2264 7 + 2618010 CCCCAAC a score=2820.0 s hg17.chr17_random 2271 3 + 2618010 ACA s panTro1.chr19_random 38092919 3 - 57627672 ACA s mm5.chr11 101241732 3 + 121648857 ACA s rn3.chr10 90605120 3 + 110733352 ACA s canFam1.chr9 41047229 3 - 53642819 ACA a score=25322.0 s hg17.chr17_random 2274 129 + 2618010 TCTCTATG----CTGATATTTGGCCTCTTCCTTAGGGTGTT------TGTTTTAGCGTCTTTAGGGTCTTGCT----GCA------TACTGAATACTTTTGTACCTCTTTGTGATGTTGC-ATGGTCAGCCTGTTGGCTGCACAAGGGAA s panTro1.chr19_random 38092922 129 - 57627672 TTTCTATG----CTGATATTTGGCCTCTTCCTTAGGGTGTT------TGTTTTAGCGTCTTTAGGGTCTTGCT----GCA------TACTGAATACTTTTGTACCTCTTTGTGATGTTGC-ATGGTCAGCCTGTTGGCTGCACAAGGGAA s mm5.chr11 101241735 111 + 121648857 TTATTATG----CTGGTATTTGGCCTAGTCCTCAAGGTG-----------TTTAGTGTCGTTAGGGTTCCGGT----GCAGGCAGTCCCAGAGGACTTTTG------TCTGTAATGGTGC--------------TTGCTGCACCAGGAAA s rn3.chr10 90605123 107 + 110733352 TTTTTATG----CTGGTGTTTGGCCTAATCCTCAAGGTG-----------TTTACAATCCTTAGGGTGCTTAG----GCC----GTCCCAGAGGGCTTTTG------TATGTGATGGTGC--------------TTACTGCACCAGGAAA s canFam1.chr9 41047232 135 - 53642819 CCAGTATGCTTACTTATATTGGGCCCATTCCTTGGGCTT--------TGTTTGCGTGTCCTTAAGATCTTGGT----ACA-GCTGTCCCTTGGTGCCTTTGTATCCCTTCATAATGATGTTTTGGCCAGCCT--CTGCTGCACGAGGGAA s galGal2.chr27_random 705751 116 - 721164 TTACTATA----CTGATCTCTAGGGGATTCTTTTAGTAGTTTGCTTCTGATTTTTCTTTTCCAAGTTATTATTCTTAGTA-GAGAAGAAAGACAACTTCT-------TTTGTGTTTGTAA--------------GTTCTGAA-------- a score=-2083.0 s hg17.chr17_random 2403 15 + 2618010 A-AAGGGACTCCTGGC s panTro1.chr19_random 38093051 15 - 57627672 A-AAGGGACTCCTGGC s mm5.chr11 101241846 16 + 121648857 AGAAGGGTAACCTGAC s rn3.chr10 90605230 11 + 110733352 AGAAAGGCAGC----- s galGal2.chr27_random 705867 13 - 721164 --ATAGTAATTCTTT- a score=-425.0 s hg17.chr17_random 2403 18 + 2618010 AAAGGGACTCCTGGCCTG s galGal2.chr27_random 705867 16 - 721164 ATAGTAATTCTTTTTT-- a score=-327.0 s hg17.chr17_random 2418 3 + 2618010 -CTG s panTro1.chr19_random 38093066 3 - 57627672 -CTG s rn3.chr10 90605241 3 + 110733352 -CTG s galGal2.chr27_random 705880 3 - 721164 TTT- a score=1205.0 s hg17.chr17_random 2421 2 + 2618010 GG s panTro1.chr19_random 38093069 2 - 57627672 GG s rn3.chr10 90605244 2 + 110733352 GG s canFam1.chr9 41047367 2 - 53642819 GA s galGal2.chr27_random 705883 2 - 721164 GA a score=22899.0 s hg17.chr17_random 2423 163 + 2618010 CTGGCCTGTGG--AACTGCTGAA---------CTGATAGCTTTACTCCTTAACATCCATCTCTCCTGAA-ATACCCTGTGTATGTTCCCTAAATACTAATGAAGTCTTGCCCTGGTTGCTACTTAGTGAACAGTTTTTTAATGCAATTTCTCTGTATTAGTGGGGCAGAGTGTTT s panTro1.chr19_random 38093071 163 - 57627672 CTGGCCTGTGG--AACTGCTGAA---------CTGATAGCTTTACTCCTTAACATCCATCTCTCCTGAA-ATACCCTGTGTATGTTCCCTAAATACTAATGAAGTCTCGCCCTGGTTGCTACTTAGTGCACAGGTTTTTAATGCAATTTCTCTGTATTAGTGGGGCAGAGTGTTT s mm5.chr11 101242009 137 + 121648857 CTGGCCTG-------CTGCTAAACT------CCTGGTAGCGTTTCTCCTTAACACTCA--TCTCCTAGA-GTA------------TCCCTGAGC-CCAAAGACATCTTCATCTGCCTGTTGCTTGCTG--CAGTCTGTCGTTACTTTTT-----TGTTAGTGGAACAGACTG--T s rn3.chr10 90605246 132 + 110733352 -----CTT-------CTGGTAAACT------CCTGGTAGCTTTTCTCCTTCACACTCACCTCCTATAGA-GTA------------TCCCTGAGCTCTAAGGACATTGTCACCTACTTG---CTTGCTG--CAGTCCATTGTCACTTTCT-----TGTTAGTGGAGCAGACTC--T s canFam1.chr9 41047369 161 - 53642819 CAGGGCTGTTG--AACAGCTGGA---------CTGATGGCTTTGCTCCTTAACACTCATCTCTCCTGAACATCCCATGCATATGTTCCCTAAATACTAATGAAGTCTTGCTCTTGTTTTTAGTTGCTG--TAGTTTGTTTAAGCAACTTCTCATTATTAG-GGGGTAGTATTTTT s galGal2.chr27_random 705885 137 - 721164 CTGACATGCAGTAAGTTACTGATCTGTTTCAGCTGTTAGTCTTTTTTAATAAAA-----------TGAA-ACA----TTACAGATTTTCTTCATGTTAA----GTTTTGTCCTTTTCGCTCTAAAATGAGCAGAAT-TTAATATTTTTCCAGTTGCTT----------------- a score=3378.0 s hg17.chr17_random 2586 10 + 2618010 ACTG------CTTAAA s panTro1.chr19_random 38093234 10 - 57627672 ACTG------CTTAAA s mm5.chr11 101242146 16 + 121648857 ACTGTTTGAACTTAGA s rn3.chr10 90605378 16 + 110733352 ACTGTTTGAACTTAGA s galGal2.chr27_random 706022 10 - 721164 ------GTGACTTAAA a score=24971.0 s hg17.chr17_random 2596 94 + 2618010 GTTATccaatgttaattttctggttttgact-attatagttaatataagttatc---gtcattaggggaagctggggaatgtgaattctctctgctgt s panTro1.chr19_random 38093244 94 - 57627672 GTTATccaatgttaattttctggttttgact-attatagttaatataagttatc---gtcattaggggaagctggggaatgtgaattctctctgctgt s mm5.chr11 101242162 96 + 121648857 GCTAACCAGTGTTAATTTCCTGGTTTGGGCTAACTGTACTTTCATTAAGTTGTAGAGGATGGTAGGTGAAAGAACAGTATGTGAA--CTCTTTACTGT s rn3.chr10 90605394 96 + 110733352 GCTAACCAGTGTTAATTTCCTGGTTTGGGCTAACTGTACTTTTATCAAGTTGTAGAGGATGGCAGGTGAAGGAACAGTGTCTGAA--CTCTTCACTGT a score=82541.0 s hg17.chr17_random 2690 174 + 2618010 ttttacaactttttctataactgtaaaaatatatcaaaaacatt---gttttttaaaaTATGGAGGTACAGCAGCGTTTTTATTTTTGGG--GGC-ATTGTCAGCCTGCCTCTTCAGTTCTGTTGAAGGCCTAAAATTTGTCTCAATGGTTTGTCTCTATAGGAAAC-TTTTCTTCTGGCT s panTro1.chr19_random 38093338 178 - 57627672 ttttacaactttttctataactgtaaaaatatatcaaaaacattatagttttttaaaaTATGGAGGTACAGCAGCGTTTTTATTTTTGGG--GGC-ATTGTCAGCCTGCCTCTTCAGTTCTGTTGAAGGCCTAAAATTTGTCTCAATGGTTTGTCTCTATAGGAAACTTTTTCTTCTGGCT s mm5.chr11 101242258 166 + 121648857 TTCTGCAGC-TTTTCTAGACGTCCCAAATAAAATAAAAAATGT------------AAATGTAGAGGTTCTGCTATGTTTTTATTTTAGGGGTGAC-CTTGTCAGCCTGGTGCTTGAGCTCTGTTGAGGTCCTAAAATATATCCCGATTATTTGTCCCTATAGGAAGC-TTTTCTTCTAGCT s rn3.chr10 90605490 166 + 110733352 TTCTGCAGC-TTTTCTAGAAGTCCTAAATTAAATAAAAAATGTT------------AATGTAAAGGTTCTGCTGCGTTTTTATTTTAGGGATGAC-CTTATCAGCCTGGTGCTTGAGCTTTGTTGAGGTCCTAAAATATGTCCCAATTATTTGTCCCTATAGGAAGC-TTTTCTTCTAGCT s canFam1.chr9 41047568 174 - 53642819 Ttttgcaac-ttttctctaaatctaaaatgatctcaaaataaac-----tttaaaaaATGTAGAGGTGCCACAGTGTTTTGGTTTTTAGGGAGGCAACTGTACACTTACCTTCTGAGTTCAGTTGAGGGCCTAAAATTTGTCCCAACGGTTTGTCTGTACAGGAAAC-TTTTCTTCTGGCT a score=50097.0 s hg17.chr17_random 2864 81 + 2618010 AAAGAAGAAAGACAGCT----TGGTGAAGTGA--------------CTGAGCA----------GACAGAAGGGACAGCAGCCTGCAT--CCCACAGAAGGCAAAAAATGTT s panTro1.chr19_random 38093516 81 - 57627672 AAAGAAGAAAGACAGCT----TGGTGAAGTGA--------------CTGAGCA----------GACAGAAGGGACAGCAGCCTGCAT--CCCACAGAAGGCAAAAAATGTT s mm5.chr11 101242424 81 + 121648857 GAAGAAGAGATTCCATT----GGGTGAGGTGA--------------CAAAGCA----------GACAGAAGGGACAGGAGCCAGTGC--CTCACAGAAGACAAGACGCGCT s rn3.chr10 90605656 81 + 110733352 GAAGAAGAGATTCCATT----GGGTGAGGTGA--------------CAAAGCA----------GACAGAAGGGACAGGATCCAGTGC--CCCACAGAAGACACAACATGCT s canFam1.chr9 41047742 81 - 53642819 AAAGAAGAAATTCAGCT----TGATGAAGTGA--------------CTGAGCA----------GACCAAAGAGACAGGAACCTGCAT--CCCACAGAAGACAAAAAATGTG s fr1.chrUn 104599737 111 - 349519338 AAAAGAAAAAGTAAGCTGTAGTGCTGAAGTGATTGGATCTGGTCCCCAGGGTAAGAACCCAGTGACAAAGTATGGAAAAACCTGCACAGCCTCCAGGGAACAGCGGTTGTT a score=62607.0 s hg17.chr17_random 2945 53 + 2618010 GCCAGTG----A----------------------GAGGGAGCTCTACATCCCATCTGTGGATCTTCTGACTGCCCAGGT------- s panTro1.chr19_random 38093597 53 - 57627672 GCCAGTG----A----------------------GAGGGAGCTCTACATCCCATCTGTGGATCTTCTGACTGCCCAGGT------- s mm5.chr11 101242505 53 + 121648857 GCCAGTG----A----------------------AAGGGAGCTGTACATTCCATCTGTGGACCTCCTGACTGCCCAGGT------- s rn3.chr10 90605737 75 + 110733352 GCCAGTG----AGTTCCCAAAGAGACATGCCTGTGTGAGAGCTCTACATTCCATCCGTGGACCTTCTGACTGCCCAGGT------- s canFam1.chr9 41047823 53 - 53642819 GCCAGCG----A----------------------GAGAGAGCTCTACATCCCATCTGTGGACCTTCTGACTGCCCAGGT------- s fr1.chrUn 104599848 57 - 349519338 GTCTGTGGACCA----------------------AGAGGAGTATTACATCCCATCTGTTGACCTGCTGACTGCACAGGT------- s danRer1.chr3 17317909 60 - 31142523 GACTGCG----A----------------------TCAGGAATTCTACATTCCATCTGTGGACTTACTCACAGCTCAGGTATGACCT a score=1057.0 s hg17.chr17_random 2998 10 + 2618010 GGAAGATTCA s panTro1.chr19_random 38093650 10 - 57627672 GGAAGATTCA s mm5.chr11 101242558 9 + 121648857 -AAGCAGTCC s rn3.chr10 90605812 5 + 110733352 AAA-----CA s canFam1.chr9 41047876 10 - 53642819 AGAAGATTGA s danRer1.chr3 17317969 10 - 31142523 GTAAGACTCA a score=114159.0 s hg17.chr17_random 3008 397 + 2618010 GCACTTTGAA-GGGCAAGGGACAGA--------GGGAGAGAG--------CACAGGA-----------------GAGAAGGTGGTAGAGC---CATAGGC-AGTAATCAGGAAATCAGAGATATGCCCACTTTGATCTAGTCAGGTATATTTAATGGGAAGGAGATCACCCATGGAAGCAAGTTTGTAAACTAGATGTTTCCTCTTTGAATTGGGAACTCAATCCTGTACTTCCCCACAAACTCCCTTTAGTTGCCTCTTCACCTTGGCCTAGCTAATTCTCCTTCATACCTGCTGCATTTTCTC--TTTCCTGCTA-TTGGGTTATTTCAACATCTAATTCCCATTTAACTCTTCTTGTTTTCACTTGTCTGGGGACAGGCATGAATTTGAACAGAGTTG-AATACGAAATG-ATGTGGAA----ATGGTCTACAGGTCCCAT s panTro1.chr19_random 38093660 400 - 57627672 GCACTTTGAAGGGGCAAGGGACAGA--------GGGAGAGAG--------CACAGGA-----------------GAGAAGGTGGTAGAGC---CATAGGC-GGTAATCAGGAAATCAGAGATATGCCCACTTTGATCTAGTCAGGTATATTTAATGGGAAGGAGATCACCCATGGAAGCAAGTTTGTAAACTAGATGTTTCCTCTTTGAATTGGGAACTCAATCCTGTACTTCCCCACAAACTCCCTTTAGTTGCCTCTTCACCTTGGCCTAGCTAATTCTCCTTCATACCTGCTGCATTTTCTC--TTTCCTGCTA-TTGGGTTATTTCAACATCTAATTCCCATTTAACTCTTCTTGTTTTCACTTGTCTGGGGACAGGCATGAATTTGAACAGAGTTGAAATGCAAAATGAATGTGGAA----ATGGTCTACAGGTCCCAT s mm5.chr11 101242567 394 + 121648857 GCGCTCGGAG-GGACAAGGG-CAGA--------GAGAGTGAGTCCTGA--CAAATGAGCTTTCACCTTGTTACTGAGAAGGTGCTGTAGCCTTCATGGTC------CTGGGGAGTTAGAGATGGGCAGGC-TGGATCCAG-------TATCTCATGAGGATAAGATGGTGCGTGG-AGCAAGTTTCTAAACTGTTTGCTTC-----TGAGTGTGAAGCTCAGGCTTGTGCTTCCCCATGGCTTCCCTCCAGTGGTCTTGTAAGCTTAGCCTGCTTCACTCACC----TGCCCACTGTCTCTTCTC----CCCTGCCAGTTAGAGTTTGAGAACACCATGTTCCTGTTTAACTCTTCTAG---TCACTTGGTTGAGGGGGGACATGAATTTAAATAGAATTG-AAT-CCAGGCA-ATGTCCAG----GAGACCTGATGGTCCATT s rn3.chr10 90605817 377 + 110733352 CCGTTTTGAG-GGACAAGGG-CAGA--------AAGAG-GAGTACTGA--GGAAAGAGCTTGCACCTTGTTATTGAGAAGGTGGCACAGCCATCATGGTT------CTGGGGAGTTACAGATGGGCAGAC-TGGATTTAG-------CATCCAGTGAGG-----------CATGG-AGCAAGTTTCTAAACTGTTTTCTCC-----TGAGCTTGAAGC-CAGGCTTGTGCTTCCCCACAGCTTCCCTCCAGTGGTCTCAGAATCTTAGCCCACTTCACTTGCC----CGCCCAA-GTTTCCTCTC---CCCCTGCCAGTTAGAGTTTGA-GACACCAAATTCCC-TTTAAGTCTTCTAA---TCACTTGGTTGAGGGGGGACATGAATTTGAAC--AATTG-AAT-CCAGGCA-ATATGCAG----GAAACCTGAAGGTCCAGT s canFam1.chr9 41047886 411 - 53642819 ACACTTTGGG-GGGCAAGGGACAAAAGATTGTGGAAAAAGAGTCCTTACCCTCTTGAG----------------GAGAAGGTGGTAAAGC---CACAGGGCAGTGTCCCACAAGTTAGAGATTGGCCCACTTCGATCATA-----TGCCTCGAATGGCAAGGGGATCGCCTGTGGAAGCAAGCCTCTTAACTAAATGTTTCTTCTCTGAATCAGGAACTCCGTCTTGGGCTTCCCCACAGCTTCCCTTTAGTTGCCTCTGCATTTCTGCTTTTTGAGTTCACTTTGACCCCCACTGCATTTTCTCTCTTTCCTGCCC-CTTGGGTATTTGAACGTCTCATCCCCATCCCTCTTTTCTTGATTTCCCTTGACTGAGGTGAGGCATGAATTTGAACAG------AGT-CCAGGAAAGTGTGGAGCTCAGTGACTTACAAGTCCCCT a score=91.0 s hg17.chr17_random 3404 1 + 2618010 T s danRer1.chr3 17318024 1 - 31142523 T a score=6532.0 s hg17.chr17_random 3405 13 + 2618010 CAAGA-----CATGGCTC s panTro1.chr19_random 38094060 13 - 57627672 CAAGA-----CATCGCTC s mm5.chr11 101242961 18 + 121648857 CAGGAAAGAGCATGGCTC s rn3.chr10 90606194 18 + 110733352 CATAAAAGAACATGGCTC s canFam1.chr9 41048297 18 - 53642819 CAAGACAAAACCTGGCTC s galGal2.chr27_random 707073 13 - 721164 CATGT-----TATGATTC s danRer1.chr3 17318025 13 - 31142523 CATGG-----TAAAACTC a score=160858.0 s hg17.chr17_random 3418 122 + 2618010 CAGCATGCACTCCAAACAGCCTAACATTGTC-----TTTTTTTATAGGACCTGCTGTCCTTTGAGCTGTTGGATATAAACATTGTTCAAGAGTTGGAGAGAGTGCCCCACAACACCCCTGTGGGTAA s panTro1.chr19_random 38094073 123 - 57627672 CAGCATGCACTCCAAACAGCCTAACATTGTC----TTTTTTTTATAGGACCTGCTGTCCTTTGAGCTGTTGGATATAAACATTGTTCAAGAGTTGGAGAGAGTGCCCCACAACACCCCTGTGGGTAA s mm5.chr11 101242979 125 + 121648857 CCACTTGTGCTGCAGACACCTTTATTTGGCC--ATCTCTTTTTCTAGGACCTGCTGTCCTTTGAGCTGCTGGATATAAACATTGTCCAAGAATTGGAGAGAGTGCCACACAACACCCCTGTGGGTAA s rn3.chr10 90606212 125 + 110733352 CCACTTGTTCTGCAAATGCTTGTGTTTGACC--ATCTCTTTTTCTAGGACCTGCTGTCCTTTGAACTGCTGGATATAAACATTGTTCAAGAATTGGAGAGAGTGCCACACAACACCCCTGTGGGTAA s canFam1.chr9 41048315 125 - 53642819 AAGCATCCACTGCAGGTAGCCTAACATTGCC--CTTTTTGTCCTTAGGACCTGTTGTCCTTTGAGCTGTTGGATATAAACATTGTCCAAGAGTTGGAAAGAGTGCCCCACAATACTCCCGTGGGTAA s galGal2.chr27_random 707086 125 - 721164 CAG--TTCATTGCTTGTTGATGAAAACTGTGGGATTTCTTTCTCTAGGATTTGCTGTCTTTTGAGCTACTGGACATCAATATTGTACAGGAATTAGAGCGAGTGCCACACAATACTCCTGTTGGTAA s fr1.chrUn 104599969 117 - 349519338 CAGCAAGCACTG-----ATCTGTCAGCTGTG-----TGATTCCCCAGGATCTCCTCTCCTTTGAACTGTTGGACATTAACATCGTCCAAGAGTTGGAGAATGTCCCAAACAACACTCCTGCAGGTAA s danRer1.chr3 17318038 120 - 31142523 CATTGTCAAATCCAGACA-CTCCCTTTTGCC------CTTTACTTAGGACTTACTGTCTTTCGAACTGCTGGACATCAACATTGTGCAAGAGCTGGAGAGCGTGCCCAACAATACTCCTGCGGGTAA a score=4482.0 s hg17.chr17_random 3540 17 + 2618010 GAATGT--CACTCATTTCA s panTro1.chr19_random 38094196 17 - 57627672 GAATGT--CACTCATTTCA s mm5.chr11 101243104 17 + 121648857 GATTGT--CACTTCACTCA s rn3.chr10 90606337 17 + 110733352 GACTGT--TACTTCGCTCA s canFam1.chr9 41048440 17 - 53642819 GAATGT--CATTCAACCCA s galGal2.chr27_random 707211 16 - 721164 GGATATTCCAGTGAAC--- s fr1.chrUn 104600086 14 - 349519338 GAG-----CAGTTCTTTCA a score=29379.0 s hg17.chr17_random 3557 146 + 2618010 TCTTGTTCGTCTTACTAATAGGCACAAAAGTACCACAGCCTAGACACTGGTAG----TGTTTTATTCTGAG----GAAATGGCAAGGATTTCTCCCAC----AGTAGGATAGTAAAGCAGCAATCATGGATCCGTTTTTC--TTCTTTCCTGTCCTTTGT s panTro1.chr19_random 38094213 146 - 57627672 TCTTGTTCGTCTTACTAATAGGCCCAAAAGTACCACAGCCTAGACACTGGTAG----TGTTTTATTCTGAG----GAAATGGCAAGGATTTCTCCCAC----AGTAGGATAGTAAAGCAGCAATCATGGATCCGTTTTCC--TTCTTTCCTGTCCTTTGT s mm5.chr11 101243121 131 + 121648857 TCTTGTT-----------TAGGTGTTGGCATTACACGGTCT----CTTCTTGG----TCTGCTGTGCAGCG---CTAGAGGACGAGGATCCCTCCCAT----TTTGTGACAGTGAAGTTGTACCCATAG-TCCATCTCCT--CCTTTCCCTGTCGTCTGT s rn3.chr10 90606354 117 + 110733352 TCTTGTT-----------TAGG-------------------------TGTTGG----CATTACGGTCTGTGGCCCTAGAGGGCGAGGATTCCTCCCATGCTGTGTGTGACAGTGAAGTTATACCCATGG-TCCATCTCCT--CCTCTCCCTGTTGTCTGT s canFam1.chr9 41048457 156 - 53642819 TGTTGTTTATTTTATTAACAGACACAAAAGTGCTACAGCCTAGACTCTAGTAGTGAATGTCTTATTCTGAGGTAATACATGGCAAGGATTTTTCTTAC----CATGAGACATTAAAACTGCACCCATGGGTCCATTTTCCTTCTTTTCCCTGTCCTCTAT s galGal2.chr27_random 707227 118 - 721164 TGTTGTT-----------AGCGTTCTGATTTACCATTTACT------CAATGA----AAATTTG-TCTGAG----CAAA-----AGTATTTGTTCTTT----GG-------GTGAAAGTGTCTTCCCAGCTCCTGTCTTTTGTTTTCTTTTTTCCTTTGT a score=2115.0 s hg17.chr17_random 3703 3 + 2618010 CAA s panTro1.chr19_random 38094359 3 - 57627672 CAA s mm5.chr11 101243252 3 + 121648857 CAG s rn3.chr10 90606471 3 + 110733352 CAG s canFam1.chr9 41048613 3 - 53642819 CAG a score=91.0 s hg17.chr17_random 3706 1 + 2618010 A s canFam1.chr9 41048616 1 - 53642819 A a score=-155.0 s hg17.chr17_random 3706 1 + 2618010 A s panTro1.chr19_random 38094362 1 - 57627672 A s mm5.chr11 101243255 1 + 121648857 T a score=1662.0 s hg17.chr17_random 3707 11 + 2618010 AGTAACAACAT s panTro1.chr19_random 38094363 11 - 57627672 AGTAACAACAT s canFam1.chr9 41048617 11 - 53642819 GTCAACAATAC a score=85485.0 s hg17.chr17_random 3718 927 + 2618010 g-ctgggcatggtggctcgtgtctataatcccagctctttgggaggccaaggcaggaggatcacttgaggccagggtttgagaccagcctgggcaacatggtgaaacccccatctctacaaaaattacttttaaaaattagctgggtgtggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgagacgggcagatcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccccttctctactaaaaatacaaaattagctgggcatggtggcacatgcctgtaatccgaactactcgggaggctgaggcgggagaattgcttgaacccagaaggcggaggttgtggtgagctgagattgcaccattgcactccagccaggacaacaagagcaaaactccgtctc--aaaaaaaaaaaaaaaaaaaattagcttggcatggtggcctgcacctgtggtcccagctaccagggagactgaagtgggagaatctcctgatcccaggaggcagaggctgcagtgagccaggattgtgccattgctctccagcctggatgacagagtgaaacccaatctcaaaaaacaaacaaaaaaaaGAggctgggcacggtagctcacg-cctgtaatcccagcactttgggaggccaaggctggtggatcacaaggtcagaagttcaagaccagcctggccaagatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggcaggtgcctgtaatcccagctactcgggaggctgaggcagagagttgcttgaacctgggaggc-ggaggttgcagtgagccgagattgtgccactgcattctagcctgggtgacagagcaagactgcatctc------------aaaaaaaaaaaaaaaagcaataaaacaa s panTro1.chr19_random 38094374 944 - 57627672 gactgggcatggtggctcgtgtctataatcccagctctttgggaggccaaggcaggaggatcacttgaggccagggtttgagaccagcctgggcaacatggtgaaacccccatctctacaaaaattacttttaaaaattagctgggtgtggccaggcacggtggctcacgcctgtaatcccagcactttgggaggctgagacgggcagatcacctgaggtcggaagtttgagaccagcctgaccaacatggagaaaccccttctttactaaaaatacaaaattagctgggcatggtggcacatgcctgtaatccgaactactcgggaggctgaggcgggagaattgcttgaacccagaaggcggaggttgtggtgagctgagattgcaccattgcactccagccaggacaacaagagcaaaactccgtctcaaaaaaaaaaaaaaaaaaaaaattagcttggcatggcggcctgcacctgtggtcccagctaccagggagactgaagtgggagaatctcctgatcccaggaggcagaggctgcagtgagccaggattgtgccattgctctccagcctggacgacagagtgaaacccaatctcaaaaaacaaacaaaaaaaaGAggctgggcacggtagctcacgccctgtaatcccagcactttgggaggccaaggctggtggatcacaaggtcagaagttcaagaccagcctggccaagatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggcaggtgcctgtaatcccagctactcgggaggctgaggcagagagttgcttgaacctgggaggcgggaggttgcagtgagctgagattgtgccactgcattctagcctgggtgacagagcaagactgcatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaGCAATAAAACAA a score=3490.0 s hg17.chr17_random 4645 8 + 2618010 GTTCGTGC s panTro1.chr19_random 38095318 8 - 57627672 GTTCGTGC s rn3.chr10 90606487 8 + 110733352 GTGTGTGC s canFam1.chr9 41048630 8 - 53642819 GTTTGTGC a score=1097.0 s hg17.chr17_random 4653 2 + 2618010 AA s panTro1.chr19_random 38095326 2 - 57627672 AA s mm5.chr11 101243275 2 + 121648857 AG s rn3.chr10 90606495 2 + 110733352 AG s canFam1.chr9 41048638 2 - 53642819 AA a score=6936.0 s hg17.chr17_random 4655 16 + 2618010 GGCTTTTCCACTATAA s panTro1.chr19_random 38023393 16 - 57627672 GGTTTTTCCCCTATAA s mm5.chr11 101243277 16 + 121648857 GGCTGCCGTACTGTAA s rn3.chr10 90606497 16 + 110733352 GGCTGCCTTGCTGTAA s canFam1.chr9 41048640 16 - 53642819 GACTTCCCCACCATAA a score=546.0 s hg17.chr17_random 4671 1 + 2618010 A s panTro1.chr19_random 38023409 1 - 57627672 A s mm5.chr11 101243293 1 + 121648857 A s rn3.chr10 90606513 1 + 110733352 A a score=2832.0 s hg17.chr17_random 4672 5 + 2618010 GGAAT s panTro1.chr19_random 38023410 5 - 57627672 GGGAT s mm5.chr11 101243294 5 + 121648857 GGGAC s rn3.chr10 90606514 5 + 110733352 GGGAC s canFam1.chr9 41048764 5 - 53642819 GGAGC a score=75969.0 s hg17.chr17_random 4677 239 + 2618010 CCT-CTTCTCTTTTTTCCCTCTAGATACTTGTGTCCTTTTGTTCCTTTATGTTCATGG---TTTTGTGTCTTGGCCACAGCTTTCCAGGCTAAATAACTGTGATTCTTCCTGCATTGATTGATCTGAGATATTTTGCTTACTTATTGGTCTGGAGAAATTTTT-----TGTAACAGACCTCAAAGCATATCTTGGTTTATTTTAGCCCTGCGGGAGGCAAGAAGCCTACAAA-CTGCTACTTCT-GGACA s panTro1.chr19_random 38023415 240 - 57627672 CCTTCTTCTCTTTTTTCCCTCTAGATACTTGTGTCCTTTTGTTCCTTTATGTTCAGGG---TTTGGTGTCTTGGCCCCAGCTTTTCAGGGTAAATAACTGTGATTCTTCCTGCATTGATTGATCTGAGATATTTTGCATACTTACTGGTCTGGAGAAATTTTT-----TGTAACAGACCTCAAAGCATATCTTGGTTTATTTTAGCCCTGCGGGAGGCAAGAAGCCTACAAA-CTGCTACTTCT-GGACA s mm5.chr11 101243299 223 + 121648857 CCC----TTCTTCATTCCC--------------TCCCTTTGTTCCTTTC--TTCATAG---TTTTGTATATTGGCTTTGACCTTGTAGGCCATGTACTTGTTTGTGACTCAGCTTTGATGAGCCAGAGCTA-GTTGCGTTCCTGGTGAGCTAGAAAAGTTCTG-ATGACATGACAGCTGGTGGAGCATATTTGGGTTTATTTTAACCCTGCAGGAAGCAAGAAACCTACAAA-CTGCTGCTTCT-GGACA s rn3.chr10 90606519 226 + 110733352 CAC-TTCTTCATTTTTC----------------TCCCTTTGTTCCTTTA--CTCATAG---TTTTGTATCTTGGCTTTGACTTTCTAGGCTAGTTCCTTGTTTGTGGCCCAGCTTTGATCAGCCAGAGCTA-GTTGCATTCCTGGTGATCTAGAGAAGCTCTTCATGATGTGACAGGTGGTGGAGCATATTTGGGTTTATTGTAACCCTGTAGGAAGCAAGAAACCTACAGA-ATGCTGCTTCTGGGACA s canFam1.chr9 41048769 236 - 53642819 CCTCCTCTCCATTTTTC--TTTAAATTGTTAT-TTTTTTTATTCCTTTACATTCCTGG---TCCTGCGTCTTGGCCATGGTTTCTCAGGCCAGATGACTTTGATCCTTCCTGTATTTATTGATCTGAGTTA-CTTCCACACCTAATGGTCTGGAGAAATTCTT-----TACAACAGGCCTCGAAGCATACCTAGATTGATTTCAGTCCTGTAAGAGGCAAGAAGTCTGTGAG-GTGCTGTTTCT-AGACA s galGal2.chr27_random 707379 200 - 721164 ---CTTTGTCTTCTTTTCAATTTCAC-------ATCCCCAAGACCATAAGATTCCAGGCACTCTAGAGGGTTGCCATTTGCTTTCCTCAACAAGTACCAGTAATTG---CAAAGTTAATTG-TCTGTTTTG-CCAAAGTATCT-----TGTAGGATAACTCTG----------CTGTCTTGGAAGAATATT----------------CTTTAAGA---AAGGATCTTAAAAAGACCCTTCCCCC-AGGAA a score=4354.0 s hg17.chr17_random 4916 18 + 2618010 C-TGACTGTTGATGATATG s panTro1.chr19_random 38023655 18 - 57627672 C-TGACTGTTGATGATATG s mm5.chr11 101243522 19 + 121648857 CTTGACTGTTTATGATGTC s rn3.chr10 90606745 18 + 110733352 CTTGACTGTT-ACGATGTC s canFam1.chr9 41049005 18 - 53642819 C-TGACTGTTGATGATATG s galGal2.chr27_random 707579 5 - 721164 G-TAAC------------- s danRer1.chr3 17318177 18 - 31142523 -CTCAGTGTTGATTGTATG a score=159940.0 s hg17.chr17_random 4934 129 + 2618010 ATGCTTT-CTCTTGATTG--ATGGTTCTCCT----GTCTTCATTCT--C------------CAGATGTGACTCCCTGCATGTCTCCTCTGCCACATGACAGTCCTTTAATAGAGAAGCCAGGC------TTGGGGCAGATAGAGGAAGAGAATGAA s panTro1.chr19_random 38023673 129 - 57627672 ATGCTTT-CTCTTGATTG--ATGGTTCTCCT----GTCTTCATTCT--C------------CAGATATGACTCCCTGCATGTCTCCTCTGCCACATGACAGTCCTTTAATAGAGAAGCCAGGC------TTGGGGCAGATAGAGGAAGAGAATGAA s mm5.chr11 101243541 129 + 121648857 ATGCTTT-CTCTCGGTTG--ATGGTTTTCCT----GTCTTCATTCT--C------------CAGATATGACTCCCTGCATGTCTCCTCTGCCACATGACAGTCCTTTAATAGAGAAGCCAGGC------TTGGGGCAGATACAGGAAGAGAGTGAA s rn3.chr10 90606763 126 + 110733352 ATGC--T-CTCTCGGTTG--ATGGTT-TCCT----GTCTTCACTCT--C------------CAGATGTGACTCCCCGCATGTCTCCTCTGCCGCATGACAGCCCTTTAATAGAGAAGCCAGGC------TTGGGGCGGATACAGGAAGAGAGTGAA s canFam1.chr9 41049023 129 - 53642819 ATGCTTT-TTTTTGGTTG--ATGGTTCCTCT----GTCTTCATTCT--C------------CAGATATGACTCCCTGCATGTCTCCTCTGCCGCATGACAATCCTTTAATAGAGAAGCCAGGC------TTGGGGCAGATTCAGGAAGAGAGCGAA s galGal2.chr27_random 707584 130 - 721164 ---CTAT-TACTCTAATG--ATGGTCACCTTCATAATCTCTGTTTT--A------------CAGACATGACTCCATGCATGTCCCCTTTGCCACATGATAGCCTCTTGCTAGAGAAACCTGGC------TTAGATCAGATAGACGAGGAGAATGAG s fr1.chrUn 104600697 139 - 349519338 ATGTATT-TATTTAAATGTCACGCCTCTGTC----ATCTTGTTTCTGAA------------CAGACAGGACTCCCTGCATATCCCCATTGCCCCAAGATGGCGTCCTGCAGGACAAAGGGAGCCCCTCATTGGGTCTCATCCAGGAAGAAACTGAA s danRer1.chr3 17318195 140 - 31142523 -TATTTCAATCTTTACTG--AT-TTTGTCCC----GCCATTTTTCT--CTCTGTAAACGTATAGACACTACTCCATGCATCTCACCTCTGCCCCATGATGGACCACTTCAGGAAAAACCAACA------CTGGGACTCATCCAAGAGGAAACTGAA a score=0.0 s hg17.chr17_random 5063 1 + 2618010 G a score=2100.0 s hg17.chr17_random 5063 1 + 2618010 G s panTro1.chr19_random 38023802 1 - 57627672 G s mm5.chr11 101243670 1 + 121648857 G s rn3.chr10 90606889 1 + 110733352 G s canFam1.chr9 41049152 1 - 53642819 G s galGal2.chr27_random 707714 1 - 721164 G s fr1.chrUn 104600836 1 - 349519338 G a score=28170.0 s hg17.chr17_random 5064 29 + 2618010 GGGCAGGATTTAAAGCACTTCCT-GGTAAG s panTro1.chr19_random 38023803 29 - 57627672 GGGCAGGATTTAAAGCACTTCCT-GGTAAG s mm5.chr11 101243671 29 + 121648857 GGGCGGGATTTAAAGCACCTCCT-GGTAAG s rn3.chr10 90606890 29 + 110733352 GGGCGGGATTGAAAGCATCTCCT-GGTAAG s canFam1.chr9 41049153 29 - 53642819 GGGCGGGATTTAAAGTGCTTCCT-GGTAAG s galGal2.chr27_random 707715 29 - 721164 GGAGTGGATTTAAACCAGTGTCT-GGTAAG s danRer1.chr3 17318335 29 - 31142523 GCCCAAGGTGTCAGCAACATCCTCGGTAA- a score=6834.0 s hg17.chr17_random 5093 7 + 2618010 GGATTAA s panTro1.chr19_random 38023832 7 - 57627672 GGATTAA s mm5.chr11 101243700 7 + 121648857 GGGTTAA s rn3.chr10 90606919 7 + 110733352 GGGTTAA s canFam1.chr9 41049182 7 - 53642819 GGGTTAA s danRer1.chr3 17318364 7 - 31142523 AAATCAA a score=41281.0 s hg17.chr17_random 5100 210 + 2618010 ACATTTGTAAAGTATTTGCATCCTCCCTTTCCATATCATACC--CTATTTTACAGCTATCCCCTACTGACCCTACCTTAGCATGTAAATGGGCTTGCTTTCTGTAGCATCTCATGTTTTGAAGTCTCCTCACCTTCACATGGCACAGATAGCAGCTATTCCTTGGTTTAGTTTTAGCATGGGTA-ATGAC--TGGTGAATGTTCTTCAGCACTTT s panTro1.chr19_random 38023839 210 - 57627672 ACATTTGTAAAGTATTTGCATCCTCCCTTTCCATATCATACC--CTATTTTACAGCTATCCCCTACTGACCCTACCTTAGCATGTAAATGGGCTTGCTTTCTGTAGCATCTCATGTTTTGAAGTCTCCTCACCTTCACATGGCACAGATAGCAGCTATTCCTTGGTTTAGTTTTAGCATGGGAA-ATGAC--TGGTGAATGTTCCTCAGCACTTT s mm5.chr11 101243707 136 + 121648857 ATATCTGTAAAGCACGTGC--CTTCCCTTTCCAT-CCACCTC--TCCTCACACGTCCATTCCTCATTACCTCTACCTCAGCAAATCGATG--------TCCCATGGCATCCCTCGCT----------CTCTACGTCTCATGAC-------------------------------AGCAGGGG------------------------CAGCTCTT- s rn3.chr10 90606926 136 + 110733352 ATGTCTGTAAAGCACGTAC--TTTCCCTTTCCAC-TCACACCTGTCCTCACACGTCCATTCCTCATTACCTTTACCTCAGCAAATCGATG--------TCGCATAGCATCCCTTGCT----------CTCTA-GTCTCATGAG-------------------------------AGCAGGAG------------------------CAGCTCT-- s canFam1.chr9 41049189 208 - 53642819 ATATTTGACAAGTATTTGTATTGTCCCCTTCCATATTATACC--AT-TTTCACACATACTCCCTCCTACCCTTACTTTAGCATGTGAGTGGGTT----TTCTGTACCCTCTCATTTTGTGAAGTCCCCTCACCTTCACATGGCACAGATAGCAGCTGTCCCATGGCATGGGATCAGTATGGATACGTGACTGTGGAGGAAGCTCCTCAACACTCA a score=-3461.0 s hg17.chr17_random 5310 76 + 2618010 AAACACCAAGTGCAGACAAAGTTTAGATAGCAGCTATTCCTTGGTTTAGTTTTAGCATGGGTAATGACTGGTGAAT s panTro1.chr19_random 38024049 16 - 57627672 AAACACCCAGTGCAGA------------------------------------------------------------ s mm5.chr11 101243843 36 + 121648857 --------------------------------------CCCCCACCCAGGCTTAGGAT--GCACTGACTGGTGAGA s rn3.chr10 90607062 37 + 110733352 -------------------------------------GCCCTCACCCAGGCTTAGGAT--GCACTGACTGGTGAGA a score=1028.0 s hg17.chr17_random 5326 11 + 2618010 CAAAGTTTAGA s panTro1.chr19_random 38096002 11 - 57627672 CAAAGTTTAGA a score=436.0 s hg17.chr17_random 5337 3 + 2618010 TAG s panTro1.chr19_random 38096013 3 - 57627672 TAG s rn3.chr10 90607052 3 + 110733352 GAG a score=13292.0 s hg17.chr17_random 5340 46 + 2618010 CAGCTATTCCTTGGTTTAGTTTTAGCATGGGTAATGACTGGTGAAT s panTro1.chr19_random 38096016 46 - 57627672 CAGCTATTCCTTGGTTTAGTTTTAGCATGGGTAATGACTGGTGAAT s mm5.chr11 101243835 44 + 121648857 CAGCTCTTCCCCCACCCAGGCTTAGGAT--GCACTGACTGGTGAGA s rn3.chr10 90607055 44 + 110733352 CAGCTCTGCCCTCACCCAGGCTTAGGAT--GCACTGACTGGTGAGA a score=8339.0 s hg17.chr17_random 5386 25 + 2618010 GTTCCTCAGCACTTTAAACACCCAG s panTro1.chr19_random 38096062 25 - 57627672 GTTCCTCAGCACTTTAAACACCCAG s mm5.chr11 101243879 24 + 121648857 GCT-CTCAGCTCTTCAGACACTAAG s rn3.chr10 90607099 24 + 110733352 GCT-CCCAACTCTTCAGACACTAAG s canFam1.chr9 41049558 16 - 53642819 --------GCTCCTCA-ACACCAAG a score=4167.0 s hg17.chr17_random 5386 25 + 2618010 GTTCCTCAGCACTTTAAACACCCAG s mm5.chr11 101243879 24 + 121648857 GCT-CTCAGCTCTTCAGACACTAAG s rn3.chr10 90607099 24 + 110733352 GCT-CCCAACTCTTCAGACACTAAG s canFam1.chr9 41049558 16 - 53642819 --------GCTCCTCA-ACACCAAG a score=3982.0 s hg17.chr17_random 5411 11 + 2618010 TGCAGATAAGG s panTro1.chr19_random 38024065 5 - 57627672 ------TAAGG s mm5.chr11 101243903 11 + 121648857 TACAGGCAGGC s rn3.chr10 90607123 11 + 110733352 GGCAGATGGGC s canFam1.chr9 41049574 11 - 53642819 TGCAGACAAGG s fr1.chrUn 104601390 11 - 349519338 TTCAGATATGC a score=5357.0 s hg17.chr17_random 5411 6 + 2618010 TGCAGA s panTro1.chr19_random 38096087 6 - 57627672 TGCAGA s mm5.chr11 101243903 6 + 121648857 TACAGG s rn3.chr10 90607123 6 + 110733352 GGCAGA s canFam1.chr9 41049574 6 - 53642819 TGCAGA s fr1.chrUn 104601390 6 - 349519338 TTCAGA a score=3114.0 s hg17.chr17_random 5422 5 + 2618010 TTCGT s panTro1.chr19_random 38024070 5 - 57627672 TTCGT s mm5.chr11 101243914 5 + 121648857 TTTGT s rn3.chr10 90607134 5 + 110733352 TTTGT s canFam1.chr9 41049585 3 - 53642819 TT--T s fr1.chrUn 104601401 5 - 349519338 CTCGT s danRer1.chr3 17320397 5 - 31142523 TTCTT a score=476.0 s hg17.chr17_random 5427 1 + 2618010 G s panTro1.chr19_random 38024075 1 - 57627672 G s mm5.chr11 101243919 1 + 121648857 A s rn3.chr10 90607139 1 + 110733352 G s canFam1.chr9 41049588 1 - 53642819 G a score=251.0 s hg17.chr17_random 5427 4 + 2618010 GTGT s danRer1.chr3 17320402 4 - 31142523 ATGT a score=4638.0 s hg17.chr17_random 5428 3 + 2618010 TGT s panTro1.chr19_random 38024076 3 - 57627672 TGT s mm5.chr11 101243920 3 + 121648857 TGT s rn3.chr10 90607140 3 + 110733352 TGT s canFam1.chr9 41049589 3 - 53642819 TGT s galGal2.chr27_random 708219 3 - 721164 TTT s danRer1.chr3 17320403 3 - 31142523 TGT a score=150005.0 s hg17.chr17_random 5431 131 + 2618010 ----CTTTCAGATTCTATGGTGTCAGTAAAGAGGAAGGCTGAGAA--CATTGCTTCTGTGGAGGAAGCAGAAGAAGACCTGAGTGGGACCCAGTTTGTGTGTGAGACAGTAATCCGATCCCTTACCTTGGATGCTGC s panTro1.chr19_random 38024079 131 - 57627672 ----CTTTCAGATTCTATGGTGTCAGTAAAGAGGAAGGCTGAGAA--CATTGCTTCTGTGGAGGAAGCAGAAGAAGACCTGAGTGGGACCCAGTTTGTGTGTGAGACAGTAATCCGATCCCTTACCTTGGATGCTGC s mm5.chr11 101243923 131 + 121648857 ----CTTTCAGATTCCACTGTATCAGCAAAGAGGAAAGCTGAGAC--CCCTGCTTCGGTCGAAGAAACAGAAGAAGACCTGAGTGGGACCCAATTTGTATGTGAGACTGTAATTCGATCCCTTACCTTGGATGCTGC s rn3.chr10 90607143 131 + 110733352 ----CCTTCAGATTCCACTGTATTAACAAAGAGAAAGGCCGAGAC--CCCTGCTTCAGTCGAAGAAACGGAGGAAGACCTGAGTGGGACCCAATTTGTGTGTGAGACTGTAATCCGATCCCTAACCTTGGATGCTGC s canFam1.chr9 41049592 131 - 53642819 ----CTTTCAGATCCCACGGCCTCAGTAAAGAGGAAGCCTCAGAA--TGTCACCTCAGTGGAGGAAGCAGAAGATGATCTGAGTGGGACCCAATTTGTGTGTGAGACTGTAATCCGATCCCTCACCTTGGATGCTGC s galGal2.chr27_random 708222 128 - 721164 ----TCTACAGATACTTCTGTG---GTGAAAATGAAAACTGAACATCCACTGAACCAA--GAAGAAGGGGAAGAAGATATGAGCGGGACTCAGTTTGTCTGCGAAACTGTAATTCGCTCTCTGACTCTGGATGCTGC s fr1.chrUn 104601406 119 - 349519338 ----CCTGCAGGGTCTG--------GTGCAGATGGGGGAGGAG----TCCCGGCTCAG--GAGGAAGGGGAGGACGACATCAGTGGGACCCAATTTGTTTGTGAGACTGTGATTCGCTCGATGACTTTGGAAGAGGC s danRer1.chr3 17320406 123 - 31142523 CGTACTTCCAGATCAGG--------GTACAGAGTTGGAGGGAG----TCCCAGCACAA--GAGAAGGGAGAGGAGAACAGCATTGGGCCTCAGTTTGTCAGTCCATCTGTTATCCGCTCACTCACCCTTGAAGTGGC a score=22025.0 s hg17.chr17_random 5562 16 + 2618010 CCCAGACCACAACCCT s panTro1.chr19_random 38024210 16 - 57627672 CCCAGACCACAACCCT s mm5.chr11 101244054 16 + 121648857 TCCAGACCACAACCCT s rn3.chr10 90607274 16 + 110733352 TCCAGACCACAACCCT s canFam1.chr9 41049723 16 - 53642819 CCCAGACCACAACCCA s galGal2.chr27_random 708350 16 - 721164 ACCTGACCATAAGCCC s fr1.chrUn 104601525 16 - 349519338 TCCTGACCATACCCCT a score=40851.0 s hg17.chr17_random 5578 143 + 2618010 CCTTGCAGACAGAAGTCCTTGCAGAGTGAGTGTCCTTGCATTTCCCCTACCTAGCAGGGTGGCACCTGAATTGTGACTGCCAGACTTGACTAGTTAGATGTGCTCTTCTTCACTGAGACTGAAGGGAGAGTGATCT------TAGTTAG---- s panTro1.chr19_random 38024226 143 - 57627672 CCTTGCAGACAGAAGTCCTTGCAGAGTGAGTGTCCTTGCATTTCCCCTACCTAGCAGGGTGGCACCTGAATTGTGACTGCCAGACTTGACTAGTTAGATGTGCTCTTCTTCATTGAGACTGAAGGGAGAGTGATCT------TAGTTAG---- s mm5.chr11 101244070 78 + 121648857 CCTTGCAGGCAGAGGTCCCCACAGAGTGAGTGTCCCTAGA-----------------------------------------------------------------TTCCTTGCTGAGGAGGGAGGAAGGTTAATCT------TGGTGGG---- s rn3.chr10 90607290 79 + 110733352 CCTTGCAGGCAGAGGTCCCCACAGAGTGAGTGTCCCCATAT----------------------------------------------------------------TTCCTTGCTGAGAGGGGAGGGAGGTTGATCT------TGGTTGG---- s canFam1.chr9 41049739 142 - 53642819 CCTTGCAGACAGAAGTCCCTGACCAGTGAGTGTCCCTGAGT-CCTCCCACCCAGCAGGGCTGTATTTGAATTGTGACTACCCAATCTGAGTAGGAAGAAGTGCTCTTCTTCGCTGAGAATGGAGGTTGAGTGATCT------TTGTTAG---- s galGal2.chr27_random 708366 110 - 721164 CCACAAAAAAAGAAATCCCTGGAGAGTGAGTA---CTGTAT-------------TTAGCTGACTTCTGTGGTGTTACT---------------------------TTCCTTGCACGTATTGGCCACAAATTGATTTATACTGCAGCTAATGAT a score=-114.0 s hg17.chr17_random 5721 1 + 2618010 A s rn3.chr10 90607369 1 + 110733352 C a score=2357.0 s hg17.chr17_random 5721 9 + 2618010 AAGTTCTGA s panTro1.chr19_random 38024369 9 - 57627672 AAGTTCTGA s canFam1.chr9 41049881 8 - 53642819 -AATTTGGA s galGal2.chr27_random 708476 9 - 721164 AAATTTTCA a score=541.0 s hg17.chr17_random 5730 5 + 2618010 TCTTg s panTro1.chr19_random 38024378 5 - 57627672 TCTTg s galGal2.chr27_random 708485 5 - 721164 AGTTG a score=27254.0 s hg17.chr17_random 5735 297 + 2618010 gcggggcgtggtggctcaagcctgtaatcccagcactttgggaggccaaggcaggcggatcacaaggtcaggagatcaagtccatcctggctaacatggtgaaatcccatctctactaaaaatacaaaaaattagcctggcgacgtggcgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagccaagattgcgccactgcactctagcctgggcgacaaagcgagactccatctcaaaaaaaaaaaaagaaa s panTro1.chr19_random 38024383 295 - 57627672 gcggggcgtggtggctcaagcctgtaatcccagcactttgggaggccaaggcaggcggatcacaaggtcaggagatcaagaccatcctggctaacatggtgaaatcccgtctctactaaaaatacaaaaaattagcctggcgacgtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgggaggcggagcttgcagtgagccaagattgcgccactgcactctagcctgggcgacaaagcgagactccgtctc--aaaaaaaaaaagaaa a score=1299.0 s hg17.chr17_random 6032 3 + 2618010 TTC s panTro1.chr19_random 38024678 3 - 57627672 TTC s rn3.chr10 90607370 3 + 110733352 TTC s galGal2.chr27_random 708490 3 - 721164 TTT a score=156.0 s hg17.chr17_random 6035 4 + 2618010 -TGAT s panTro1.chr19_random 38024681 4 - 57627672 -TGAT s rn3.chr10 90607373 4 + 110733352 -TGAC s canFam1.chr9 41049889 4 - 53642819 -TGAT s galGal2.chr27_random 708493 2 - 721164 TT--- a score=2180.0 s hg17.chr17_random 6039 25 + 2618010 CTTGTTTGTGTCTTTAGACTCTACG s canFam1.chr9 41049893 25 - 53642819 CATGGTGGTTTCTTTAGACTCCACA s galGal2.chr27_random 708495 25 - 721164 ACTGATTGTTGTATTAGATTCTTTG a score=1648.0 s hg17.chr17_random 6039 11 + 2618010 CTTGTTTGTGT s panTro1.chr19_random 38024685 11 - 57627672 CTTGTTTGTGT s canFam1.chr9 41049893 11 - 53642819 CATGGTGGTTT s galGal2.chr27_random 708495 11 - 721164 ACTGATTGTTG a score=4114.0 s hg17.chr17_random 6050 14 + 2618010 CTTTAGACTCTACG s panTro1.chr19_random 38024696 14 - 57627672 CTTTAGACTCTACG s mm5.chr11 101244148 8 + 121648857 CTTTTGAC------ s canFam1.chr9 41049904 14 - 53642819 CTTTAGACTCCACA s galGal2.chr27_random 708506 14 - 721164 TATTAGATTCTTTG a score=17107.0 s hg17.chr17_random 6064 48 + 2618010 --TATGCTACCTGACTGTTCTAATTAGAGCATCAGGAGTAAAGAAGCCAT--- s panTro1.chr19_random 38024710 48 - 57627672 --TATGCTACCTGACTGTTCTAATTAGAGCATCAGGAGTAAAGAAGCCAT--- s mm5.chr11 101244156 43 + 121648857 --GATGCTGGC-----ACGCTTACTAGAGCACCGAGAACAAAGAAGCCAC--- s rn3.chr10 90607377 43 + 110733352 --TATGCTGGC-----ATTCTTACTAGAGCACCAAGAACAAAGAAGTCAG--- s canFam1.chr9 41049918 48 - 53642819 --CACACTACCTGACTATTTTAATTATAGCCTCAGGAGCAAAGTAGCTAC--- s galGal2.chr27_random 708520 53 - 721164 CAAACATTCCAAGACACTTTCAGTTGTAATTTGATAAATGAAGAACCTTCTAG a score=1100.0 s hg17.chr17_random 6112 3 + 2618010 CAT s panTro1.chr19_random 38024758 3 - 57627672 CAT s mm5.chr11 101244199 3 + 121648857 CCT s canFam1.chr9 41049966 3 - 53642819 CAT s galGal2.chr27_random 708573 3 - 721164 GAT a score=39316.0 s hg17.chr17_random 6115 72 + 2618010 ----ACTCATTTCTCCATCTTCTCAGGGGCAGAATTACAGCTGCATTCCACAGTGG-AATAGCAGCCAGTTGTGCTG s panTro1.chr19_random 38024761 72 - 57627672 ----ACTCATTTCTCCATCTTCTCAGGGGCAGAATTACAGCTGCATTCCACAGTGG-AATAGCAGCCAGTTGTGCTG s mm5.chr11 101244203 69 + 121648857 ----ACTCGTTTCTGTCCTCTCTCAGGG---GAATTACAGCTGTATTCCACCGAGG-GACAGCAGCCACTTGTGCTG s rn3.chr10 90607525 69 + 110733352 ----ACTCACTTCTGTCCTCTCCCAGGG---GAATTACAGCTGTATTCCACAGAAG-AACAGCAGCCTCTTATGCTG s canFam1.chr9 41049970 68 - 53642819 ----ACCTGTTTTCGCA----CTCAGGGGCAGAATTACAGCTACATAACTCAGAGG-AACAGCAGCTACTTGAGCTG s galGal2.chr27_random 708576 71 - 721164 AAAAACTCACT----CAGTTTCTAAAAAG--GAATCAAAGATCCATCAGTCAGAGGCAATGACAGAAAATGGCAATG a score=53825.0 s hg17.chr17_random 6187 83 + 2618010 CCTGGATTCTGCAGTAAGGAATCTTCCTGTAATTTGACAGAGC-TCCTTAGCAGAGACCCCTATGGGTAGCTGAGTTGTCTGCT s panTro1.chr19_random 38024833 83 - 57627672 CCTGGATTCTGCAGTAAGGAATCTTCCTGTAATTTGACAGAGC-TCCTTAGCAGAGACCCCTATGGGTAGCTGAGTTGTCTGCT s mm5.chr11 101244272 83 + 121648857 CCTGGATTCTGCAGAAAGGATTCTTCCTGTAAGTTGACAGGAT-GCCTCAGCAAAAGCTTCCATTGGCAGCTGAGTCTTCTCCT s rn3.chr10 90607594 83 + 110733352 CCCGGATTCTGCAGAAAGGATTCTTCCTGTAAGTTGACAGGGC-GCTTCAGCAGATGCTTTCATTGGCAGCTGAGTTGTCTCCT s canFam1.chr9 41050038 83 - 53642819 CCTGGATTTTGCAGTGAGGAGTCTTCCTGTAAGTTGACAGAGCTTTTTCAGCAGAGACCTCCATT-GCAGCTGAGTTGTGTCCT a score=5481.0 s hg17.chr17_random 6270 19 + 2618010 TTCTC-CAAGGGCAGCAGTC s mm5.chr11 101244355 20 + 121648857 TTCTCGCAAGGGCAGCAATC s rn3.chr10 90607677 19 + 110733352 TTCTC-CCAAGACAGCAATC s canFam1.chr9 41050121 18 - 53642819 TTCTC-CAAAGATA-CAGTC a score=5105.0 s hg17.chr17_random 6289 30 + 2618010 CCAGAAACAGTGGATAGAAGCAGGAGTACC s mm5.chr11 101244375 29 + 121648857 TGAAAAGTGGGAGGTAACA-CAAGAATGCC s rn3.chr10 90607696 29 + 110733352 TGAAAAGTGCAAGGCAACA-CAAGAATGCC s canFam1.chr9 41050354 30 - 53642819 CCAGGAATAGTGGGCAGAAGCAGGAATACT a score=1764.0 s hg17.chr17_random 6319 20 + 2618010 AACAAAGTTTCTCAAGGTTA s mm5.chr11 101244404 18 + 121648857 AG--GCTGTCCCCAGCATTA s rn3.chr10 90607725 19 + 110733352 AA-ACTGTTCCCCAGAGTTA s canFam1.chr9 41050605 20 - 53642819 AACTAAGTTTCCCAAGGTTA a score=5274.0 s hg17.chr17_random 6339 28 + 2618010 AATTCTGCTGTAAT-AAATACCTTTATAg s mm5.chr11 101244422 27 + 121648857 AGTTCTACCATAA--AAACCCCTTTGCAG s rn3.chr10 90607744 27 + 110733352 AATGCTTCCCTAA--AAATGCCTTCATGG s canFam1.chr9 41050820 29 - 53642819 AATTCTGCTGTAGTCAATTTCCTTTACAA a score=251.0 s hg17.chr17_random 6686 4 + 2618010 ACCT s rn3.chr10 90608108 4 + 110733352 ATCT a score=9450.0 s hg17.chr17_random 6690 94 + 2618010 TTATAACAGAAACTTCTAGGTATCAGATAGATAGAACCAATAGCATATATTTTAAGAAGTATCCAAAAA-------TTCAAATATACTATGTCAAAATAAT s rn3.chr10 90608112 98 + 110733352 TCAGAACAGA--CTGCTAG-TATCAGACTGGTAGAGCCAGTTCTATATGTCTCAAAAACTATCCAAAAAATTCAGTTTCTGGTACATCGTAACAAAATTAC s canFam1.chr9 41051039 95 - 53642819 cTATAACAGAAATATCTAGATATAAGATAGGTAGAGCCCATACTGTGTATTTCAAGAACTATCTGAAAA-TTCAAATTCTAGTTCAT-----CAAAATAAT a score=662.0 s hg17.chr17_random 6784 22 + 2618010 ATTGGAGAATCTC--TTTATTATA s canFam1.chr9 41051134 24 - 53642819 GTGGGAAAGTTTATGTTTATTATA a score=91.0 s hg17.chr17_random 6805 1 + 2618010 A s rn3.chr10 90608507 1 + 110733352 A a score=18729.0 s hg17.chr17_random 6806 58 + 2618010 ATCAAATTTGACCT----ATATCTTTAAATATTATTT--ATCTTACTTTTGTTTAAAGTATACA s mm5.chr11 101245349 61 + 121648857 ATGAAATTTGACCTGCATATACCTTTAAATGTGATTT---TCCTATTTTTGCTTAAAGTGAACA s rn3.chr10 90608508 61 + 110733352 ATGAAATTTGACCTGCATATACCTTTAAACATGATTT---TCCTATTTTTGCTTAAAGTGAACA s canFam1.chr9 41051158 60 - 53642819 ATGAAATTTTATCT----ATACCTTTAAATACTATATTTGTCTCACTTTTGTTGAAAATACACA a score=72.0 s hg17.chr17_random 6864 4 + 2618010 TGTA s mm5.chr11 101245410 4 + 121648857 TGCA s rn3.chr10 90608569 4 + 110733352 CAAA a score=91.0 s hg17.chr17_random 6868 1 + 2618010 A s rn3.chr10 90608573 1 + 110733352 A a score=100.0 s hg17.chr17_random 7471 1 + 2618010 C s mm5.chr11 101245414 1 + 121648857 C a score=515.0 s hg17.chr17_random 7472 12 + 2618010 ATGTATATCTTT s mm5.chr11 101245415 12 + 121648857 ATGAATGCTTTT s rn3.chr10 90608574 8 + 110733352 ATGAATGC---- a score=1782.0 s hg17.chr17_random 7484 37 + 2618010 ATAT---------TTTTTTCCACatgtgtgtacaaatacataacaa s mm5.chr11 101245427 23 + 121648857 --------------TTTTT---------TGTACATACAAATAGAAG s rn3.chr10 90608582 23 + 110733352 --------------TTTTT---------TATCCATACAAATAGCAG s canFam1.chr9 41051251 37 - 53642819 ATACACACACACACGCTTA---------TGTACATATGCATAACAA a score=0.0 s hg17.chr17_random 7521 22 + 2618010 aaaggtctggaaagacagtacc a score=2477.0 s hg17.chr17_random 7521 18 + 2618010 aaaggtctggaaagacag s mm5.chr11 101245450 17 + 121648857 AAAGGTGTGGAGGGATA- s rn3.chr10 90608605 18 + 110733352 AAAGGTGTAGAAGGATAA a score=47.0 s hg17.chr17_random 7539 4 + 2618010 tacc s mm5.chr11 101245467 3 + 121648857 -AAC a score=2678.0 s hg17.chr17_random 7543 38 + 2618010 aaaatgttcacagctgtta-ttctgataggatttatggg s mm5.chr11 101245470 38 + 121648857 CAGTTATTCATAGTTACTG-CTCTGATAGGATCTTGAGG s canFam1.chr9 41051288 38 - 53642819 AAAATGTTCACGGTAGTTATCTCTGAAAGGATTATAGA- a score=182.0 s hg17.chr17_random 7581 2 + 2618010 ta s canFam1.chr9 41051326 2 - 53642819 TA a score=928.0 s hg17.chr17_random 8181 10 + 2618010 TTTTTCTATC s panTro1.chr19_random 38026826 10 - 57627672 TTTTTCTATC a score=4483.0 s hg17.chr17_random 8191 26 + 2618010 CTTTTTTACCCTCTCAAACATGATTG s panTro1.chr19_random 38026836 26 - 57627672 CTTTTTTACCCCCTCAAACATGATTG s mm5.chr11 101245508 24 + 121648857 CCTTTCTACCCACTC--CTAAGATTT s canFam1.chr9 41051328 26 - 53642819 TCTCTTTATTCCCTCATCCTCACTTT a score=25147.0 s hg17.chr17_random 8217 111 + 2618010 GCCAGTTTTCTCCCATGACTG--CATCATCTTTGTAAAGAAGAGGAGG-AGATAGACATATAATCCTGCAATACTCATCTCCTAACTTTTTCTCTTTTTATAGCACTGTTAGTG---- s panTro1.chr19_random 38026862 111 - 57627672 GCCAGTTTTCTCCCATGACTG--CATCATCTTTGTAAAGAAGAGGAGG-AGATAGACATATAATCCTGCAATACTCATCTCCTAACTTTTTCTCTTTTTATAGCACTGTTAGTG---- s mm5.chr11 101245532 101 + 121648857 ACCAGTGTTCTCATCAGACTT--TATCACTTCTCTAAGGTAAAGGA---AAGCAAGCAGACAA-CATGAAGTGCTTACGACGAGTC-------CTTTTTCTGCCACTGATAGCT---- s rn3.chr10 90608623 90 + 110733352 ACCAGTTGTTTA------------ATTA---CTGCAAGATAAAGGA---AAGCAGGCCGACAA-CCTAAAGTGCTTACCACATGACTC-----CTTTTTCTGGCCCTGATAGCT---- s canFam1.chr9 41051354 117 - 53642819 GCCAATTTTCTGCCATGACTATCCGTTA-CTTTGCAAAGAAAAGGAGGAAAGTAAGCGTATAGCCCTGTGGTACTAACCACTTAATGTTTTCTCTTGTTATAGCTCTATTAGCTAATG a score=80614.0 s hg17.chr17_random 8328 323 + 2618010 TATCAGTTTTGGTTTAAACTCTACTCAGTATATTAACCATCACATAAAAAGGAAAAA-AGGGATGGAGCTGCCTCCTTTTATGATTCATAGAGCTTCTTGGAAACCTGAGTGTTTCTGCCTAC---CTTGTTTCTGTGAGCTTTGATTCTATTTTGTTTTGCATAGTCTTCAAACTTAGAATATGGTCA----TAGT---------------------------TCCAGAACCAGCCCTTCCCTTTAGTTCTTCCCTCTCCTCTGGCTTTCATAATTCTAGCTTATGATCCACAAGGCTTTACCAAGTAAGGATAGTACTTAGGCCTGCTTTT-AGCTTCCACCTTAAAATTGGTTGCT s panTro1.chr19_random 38026973 323 - 57627672 TATCAGTTTTGGTTTAAACTCTACTCAGTATATTAACCATCACATAAAAAGGAAAAA-AGGGATGGAGCTGCCTCCTTTTATGATTCATAGAGCTTCTTGGAAACCTGAGTGTTTCTGCCTAC---CTTGTTTCTGTGAGCTTTGATTCTATTTTGTTTTGCATAGTCTTCAAACTTAGAATATGGTCA----TAGT---------------------------TCCAGAACCAGCCCTTCCCATTAGTTCTTCCCTCTCCTCTGGCTTTCATAATTCTAGCTGGTGATCCACAAGGCTTTACCAAGTAAGGATAGTACTTAGGCCTGCTTTT-AGCTTCCACCTTAAAATTGGTTGCT s mm5.chr11 101245847 262 + 121648857 TATCAGTTCTGATGGAGCTTTATCTCAG--TCTTAACTTTCACAATAAAAAGAAAAA-AGGACAGTAG--------------GATTCACAGTGCTCATTGGAAGCCTGGCTGTTTGAGCCCACACACCTGTTTCTGTTGACTTCCCATCTATTTGTTTTGGCATCGTCTTGAGAC--AGAATACAGTCA----TGGC---------------------------TCTAGAAACAGCCCATTCCTCTGGTTCTTTCCACT------GTGCCCGTTGTGCTAGCTCGTGATCCAC-----------------------------------------GGCCTCTTCCCTCACGGTGGTTACT s rn3.chr10 90608717 330 + 110733352 CACCAGTTCTGGTGAAGCTTTGTCTCAGTCTTTTAACTTCCACAACAAAGAGAAAAAGAGGACAGTAG--------------GACTCACATTGCTCATTGGTAGTCTGGCTGGTTCAGCCCACACACTTGTTTCTGTTGACTTCCCAGCTATTTGTTTTGGCATCATCTTGAAAC----AGTACAGTCG----TGGCTGTTTCAGTCATCTTGAAACAGTACAGTCCAGAAACAGCCCGTTCCTTTGGTTCTTTCCACT------GTACCCTTTGTGCTAGCTCGTGATCCAC-AAGCTTTACCAAGTGAGAACAGCACTGACGTTTGCTGCCAAGCCACTTCCTTCACAGTGATTACT s canFam1.chr9 41051471 207 - 53642819 TATCAGTTTTGATTTGTTTTT----------------------------------AA-------------------------GATTCATGGTGCTTCTCAGAGGCCTTGGTGTTTCTCTGTAC---CTTGT-------GAGCTTGGTTCTTTCTGGCTTTGCTTAGGCTTCAGACTTTTAATGTGGCCACAAGTGGT---------------------------TCTAGCAGCAGCCCTTCCCTCTGG-CCATCCCTCTACTCTGGCTTTCATGATTGTAGCTTAT------------------------------------------------AG-------CTGAAAATTGATTGCT a score=17441.0 s hg17.chr17_random 8651 25 + 2618010 TTCATCCTTTAGTGACATTTGCCTT s panTro1.chr19_random 38027296 25 - 57627672 TTCATCCTTTAGTGACATTTGCCTT s mm5.chr11 101246109 25 + 121648857 TTTATTCCTTAGTGAAATTTGCCTT s rn3.chr10 90609047 25 + 110733352 TTTATTCTTTAGTGAAATTTGCCTT s canFam1.chr9 41051678 25 - 53642819 CTCATCCTCTAGTGAAATCTGCTTC s fr1.chrUn 104602104 25 - 349519338 TTCACAGTTTTCTCATTCTCATCTC a score=24111.0 s hg17.chr17_random 8676 46 + 2618010 GCCT--------GAAGGACCACTTGGAAA----------TGAGAAGGAGGAGATTATCCATATC s panTro1.chr19_random 38027321 46 - 57627672 GCCT--------GAAGGACCACTTGGAAA----------TGAGAGGGAGGAGATTATCCATATC s mm5.chr11 101246134 49 + 121648857 GCCTGAA-----GAAGGACCGCGTGGAGA----------TGAGAGGGAGGAGATTGTCCACATT s rn3.chr10 90609072 49 + 110733352 GCCTGAA-----GAAGGACCACATGGAGA----------TGAGAGGGAGGAGATTGTCCACATT s canFam1.chr9 41051703 49 - 53642819 CCCTGAA-----GAGGGACCACTTGGAGA----------TGAACAGGAGGATGTTGTCCATTAC s fr1.chrUn 104602129 55 - 349519338 AGCTGAAGGTGCAAAGTCCCACACAGAGACTGAGAAAACTGAGCAGGAAGACACG--------- s danRer1.chr3 17321482 43 - 31142523 GCCTGCA-----GGTGGAGATGCGGTAGA----------GGAAGGGGAGGAGGAAGTG------ a score=9969.0 s hg17.chr17_random 8722 11 + 2618010 GCTGAGGAAGA s panTro1.chr19_random 38027367 11 - 57627672 GCAGAGGAAGA s mm5.chr11 101246183 11 + 121648857 GTTGAGGAAGA s rn3.chr10 90609121 11 + 110733352 GCTGAGGAAGA s canFam1.chr9 41051752 8 - 53642819 ACC---AAAGA s galGal2.chr27_random 709308 8 - 721164 ---GATGAAGA s fr1.chrUn 104602184 11 - 349519338 GCAAAGAATGA s danRer1.chr3 17321525 11 - 31142523 GATAAGAAAGA a score=-2746.0 s hg17.chr17_random 8733 59 + 2618010 AGCTGTCATggaggaggaggaggatgaggaggatgaggaggaggaggatgagCTCAAAG s panTro1.chr19_random 38027378 53 - 57627672 AGCTGTCATggaggaagaggaggatgaggagga------ggaggaggatgagCTCAAAG s mm5.chr11 101246194 33 + 121648857 AGTCGTTGAGGAAGAGGAGGAAGTCCAAGATGA-------------------------- s rn3.chr10 90609132 30 + 110733352 AGCCATT---GAGGAAGAGGATGTCCAAGATGA-------------------------- s canFam1.chr9 41051760 44 - 53642819 AGTTGTCGTggaggaggagg------aggaaga---------ggaggatgagCTCAAAG s galGal2.chr27_random 709316 18 - 721164 TG---------------AAGGTGACGATAAAGA-------------------------- s fr1.chrUn 104602195 24 - 349519338 AG---------------AGGAGAAGAGAGATGG--------------------GCCGAG a score=313102.0 s hg17.chr17_random 8792 291 + 2618010 ATGAAGTTCAAAGTCAG---TCCTCTGCTTCCTCAGAGGATTACATCATCATCCTGCCTGAGTGCTTTGATACCAGCCGCCCCCTGGGGGATTCTATGTACAGCTCTGCGCTCTCA---CAGCCAGGCCTGGAGCGAGGTGCTGAAGGCAAGCCTGGGGTTGAGGCTGGGC-------AGGAA-------------------------------------------------CCAGCTGAGGCTGGGGAAAGA------------------------------CTCCCTGGAGGGGAGA-------------------ACCA-------GCCACAGGAGC-----------ACAGCATAAGTGACATCCTCACGACCTCACAGACTCTGGAAACAGTGCCCCTAATCCCAGAGGTAGTGG--- s panTro1.chr19_random 38027431 291 - 57627672 ATGAAGTTCAAAGTCAG---TCCTCTGCTTCCTCAGAGGATTACATCATCATCCTGCCTGAGTGCTTTGATACCAGCCGCCCCCTGGGGGATTCTATGTACAGCTCTGCGCTCTCA---CAGCCAGGCCTGGAGCGAGGTGCTGAAGGCGAGCCTGGGGTTGAGGCTGGGC-------AGGAA-------------------------------------------------CCAGCTGAGGCTGGGGAGAGA------------------------------CTCCCTGGAGGGGAGA-------------------ACCA-------GCCACAGGAGC-----------ACAGCATAAGTGACATCCTCACGACCTCACAGACTCTGGAAACAGTGCCCCTAATCCCAGAGGTAGTGG--- s mm5.chr11 101246227 290 + 121648857 -AGAAGTCCAAAGTCAG---TCTTCTGCTTCCTCTGAAGATTATATCATCATCCTTCCTGAGTGCTTTGATACCAGCCGCCCCCTGGGGGACTCCATGTACAGCTCTGCGCTCTCC---CAGCCAGGCCTGGAGCGAGGGGCTGAAGGCGAACCTGGGATCGAGTCTGGGC-------TGGAA-------------------------------------------------CCAACTGAGGCTAGAGAGAGA------------------------------CTCCCAGAGAGGGAGA-------------------GCCA-------GCCACAGGAGC-----------AGAGCATCAGCGACATCCTCACAACCTCACAGCCTCTGGACACGGTGCCTCTAGTCCCCGAGGTGGCAG--- s rn3.chr10 90609162 290 + 110733352 -AGAAGTTCAGAGTCAG---TCTTCTGCTTCCTCTGAAGATTATATCATCATCCTGCCTGAGTGCTTTGATACCAGCCGCCCCCTGGGGGACTCCATGTACAGCTCTGCGCTCTCC---CAGCCAGGCCTGGAGCGAGGGGCTGAAGGTGAACCTGGGATCGAGTCTGGGC-------AGGAA-------------------------------------------------CCAGCTGAGGCTAGAGAGAGA------------------------------CTCCCGGAAAGGGAGA-------------------GCCA-------GCCAAAGGAGC-----------AGAGCATCAGTGACATCCTCACGACCTCACAGCATCTGGACACAGTGCCTCTAGTCCCAGAAGTGGCAG--- s canFam1.chr9 41051804 270 - 53642819 ATGAAGTTCAGAGTCAG---TCCTCTACTTCTTCAGAGGATTACATCATCATCCTGCCCGAGTGCTTTGACACTAGTCGTCCCCTGGGCGACTCCATGTACAGCTCTGCACTCTCA---CAGCCAGGCCTAGAGCGAGGGGCTGAAGGTGAACCTGGGAT-----------------------------------------------------------------------------TGAGGCTGGGGAGAGG------------------------------CTTGCTGAAGGGGAGA-------------------ACCA-------GTTGCAGGGGC-----------AGAGCATCAATGACATCCTCATGACCTCACAGACTCTGGACACAGTACCTCTGACCCCAGAGGTGGTGG--- s galGal2.chr27_random 709334 260 - 721164 -TGATGTTCAAAGTCAAGGCTCTTCCACCTCATCAGAGGATTATATCATTATTCTCCCTGAGTGCTTTGATACCAGTCGTCCTCTAGGGGAGTCCATGTATAGTTCAGCTCTTTCT---CAGCCCAGCCTGGA----------AAAGACAG----GAGATT---------------------------------------------------------------------------CTGAAACAAGGGCAGGG------------------------------AATTCAGAGGGGGAGA-------------------GGCA-------GCCACAGATGC-----------GCAGCATCAGTAACATTTTGACAACTTCACAAACACTGGCTGTAGTACCGTTGGCCCCAGAGGTTGTGG--- s fr1.chrUn 104602219 401 - 349519338 GAGTCGCTCA----------TCCTCCACCTCCTCAGAGGATTACATCATCATCCTCCCTGACTGTTTTGACACGAGTCGCCCACTAGGGGAGTCCATGTACAGGTAACTCTTCCCAATGCAGTTGAGTCCAAGCGGTGGCTTTAAAGGCAAAA--AGAACTGAAGCTGGGCTTTCTTAAGTAATAATTGTCTCTCCCATTCCAGCTCTGCTCTCTCGCAGCCAGGCGATATCCCAGCAAAGACCGATGAGGAAGCAGAACCGGCGTCTCCTGACAACTCCACTGCCTCAGGAGCGGAGGTGGGGGAGGCTGCAGTGCTTCCA-------GAGACAGGGGTGTCAGGCAGCAGCAGTGCCAACGACATGCTGTGTACCTCTCAGACGCTGGACGATGAGCCGCTCACACCCGAGGTGGTGG--- s danRer1.chr3 17321562 273 - 31142523 AAGAAGTCCGCAGCAGAACTTCATCAGCATCTTCAGAAGACTACATCATCATCCTGCCTGACTGCTTCGACACCAGTCGTCCGCTTGGAGAGTCCATGTACAGCTCAGCCCTGTCG---CAGCC------------------TGGAGATGAGCCTA---------CTGAGG-------GGGAA--------------------------------------------------AAACTGGAATCGGTGGAG--------------------------------ACCCCAGAGCTTCAGA-------------------ACCCTGCTGCTGCTGCTAGTGT-----------GGA-TGCTAACGACATGCTCTGTGCCTCCCAGACTCTGGATGCTGTGCCGCTTACGCCTGTGATTGTAGTGG a score=6425.0 s hg17.chr17_random 9083 10 + 2618010 AGCTTCCACC s panTro1.chr19_random 38027722 10 - 57627672 AGCTTCCACC s mm5.chr11 101246517 10 + 121648857 GACTTCCAGC s rn3.chr10 90609452 10 + 110733352 GACTTCCAGC s canFam1.chr9 41052074 10 - 53642819 GGCCTCCACC s galGal2.chr27_random 709594 10 - 721164 ACACCTTACC s danRer1.chr3 17321835 10 - 31142523 CACCCCGACC a score=125.0 s hg17.chr17_random 9083 12 + 2618010 AGCTTCCACCGT s danRer1.chr3 17321835 12 - 31142523 CACCCCGACCCT a score=-2902.0 s hg17.chr17_random 9093 2 + 2618010 GT- s panTro1.chr19_random 38027732 2 - 57627672 GT- s mm5.chr11 101246527 2 + 121648857 AG- s rn3.chr10 90609462 2 + 110733352 AG- s canFam1.chr9 41052084 2 - 53642819 AC- s danRer1.chr3 17321845 2 - 31142523 -CT a score=2727.0 s hg17.chr17_random 9095 2 + 2618010 CA s panTro1.chr19_random 38027734 2 - 57627672 CA s mm5.chr11 101246529 2 + 121648857 CA s rn3.chr10 90609464 2 + 110733352 CA s canFam1.chr9 41052086 2 - 53642819 AA s fr1.chrUn 104602620 2 - 349519338 CA s danRer1.chr3 17321847 2 - 31142523 CA a score=17441.0 s hg17.chr17_random 9097 31 + 2618010 CTGCCCA-GGTACCACTCACAGCCCCCTCAGC s panTro1.chr19_random 38027736 31 - 57627672 CTGCCCA-GGTACCACTCACAGCCCCCTCAGC s mm5.chr11 101246531 28 + 121648857 TTGTCCA-GGTACTGCTCA---GCACCTCAGC s rn3.chr10 90609466 28 + 110733352 CTGTCCA-GGTACTGCTCA---GCACCTCAGC s canFam1.chr9 41052088 31 - 53642819 CTGTCCA-GGTACCATCCACACCCCACTCAGC s fr1.chrUn 104602622 32 - 349519338 CCGCCCACGGCCGTCGTCACACCCAGGTCAGT s danRer1.chr12 13114260 31 + 24175710 TCGCTCT-GTCACCACCCCCGTCTCTCCGAAC a score=6667.0 s hg17.chr17_random 9128 36 + 2618010 TGGGGTGTTCTTCAGAGGTGAAATAAAGAGAGGAAT s panTro1.chr19_random 38027767 36 - 57627672 TGGGGTGTTCTTCAGAGGAGAAATAAAGAGAGGAAT s mm5.chr11 101246559 27 + 121648857 CCCCCTGTTCTCCAGAGCTGGAAT---------GAC s rn3.chr10 90609494 27 + 110733352 CACCCTGTTCTCCAGAGCTGGAAT---------GAC s canFam1.chr9 41052119 34 - 53642819 TGGGCTCTTCTTTACAGGTGGAAT--AGAGAGGAAA s fr1.chrUn 104602654 34 - 349519338 GGGAACGTAAT--AAAGGTGAAAAAAAAATAGATAT a score=75203.0 s hg17.chr17_random 9164 179 + 2618010 CGACCTGATCTCAAAACCTGTTTT-TTCCTCAGTATGGAAAGAGACTATTTTCCATAGCAAAGTCTGAATTTAGATGAATAAAAGTTGT------ATTTCCCAGTATTTGTGGATTCTGGATTTAAAGAAATATTTGTTTTAGTTGGCCTTAAATTATCTGAGTATAGTCTGTCTGCTTATATTTT s panTro1.chr19_random 38027803 179 - 57627672 CGACCTGATCTCAAAACCTGATTT-TTCCTCAGTATGGAAAGAGACTATTTTCCATAGTAAAGTCTGAATTTAGATGAATAAAAGTTGT------ATTTCCCAGTATTTGTGGATTCTGGATTTAAAGAAATATTTGTTTTAGTTGGCCTTAAATTATCCGAGTATAGTCTGTCTGCTTATATTTT s mm5.chr11 101246586 155 + 121648857 CAGCTTCATCTCCAAACCTTTCTT-TTTCT-----------------------------ATAATCTAAACTTAGGTGAATAAAAATTATACTCAGATTTCTCAGCACTTGTAAATTTGAGATTTAAACAAATGTTTGTTTTAGTTACCCTT-ACTTCCCTGAACATAGACTGTCTACTGACTTTTT s rn3.chr10 90609521 150 + 110733352 CAGCTTTACCTC-AAACCTTTCTT-TTTCT-----------------------------ACAACCTAAACTTAGATGAATAAAAGTCATATTCAGATTTCTCAGCATCTGTAAATTTGAAGTTTAAACAAATGTTTGTTTTAGTTGACCTT-----CCCTGAGCATAGTCTGTCTACTGATTTTTT s canFam1.chr9 41052153 170 - 53642819 CAACTTGATGTCAGAACCTGTTTTGTTTGTCAGAATGGGAAGGGATTATTTCCCATAGGAAAGTCTGAATTTAGATGAATAAAAGTTGT------ATTTCCCAGAATTTGTGGATCCTGAATTTAAAGCTGTGCTTATT---------CTT-AATTATCTTTGTATAGTCTGTCTACTTCTGTTTT a score=1050.0 s hg17.chr17_random 9343 3 + 2618010 GAT s panTro1.chr19_random 38027982 3 - 57627672 GAT s mm5.chr11 101246741 3 + 121648857 TAT s canFam1.chr9 41052323 3 - 53642819 GAT a score=1831.0 s hg17.chr17_random 9346 21 + 2618010 TATTGAGAGCTGGTTGGTGGt s panTro1.chr19_random 38027985 16 - 57627672 TATTGAGAGCTTGTTG----- s canFam1.chr9 41052326 21 - 53642819 TGTTGAGAGCCAGTGTTTGGT a score=28003.0 s hg17.chr17_random 9367 300 + 2618010 ttttttttttttttttttgagacagggtctcagtctgttgcccaggctggagtgcagtggcacaatcttggctcactgccacctctgcctctgaggctcaagcaatcttcccacctcagccccctgagtagctgggactataggcatgggccaccacacctagctaatttttgtatttattgtagaagcggggttttgccacgttgtccaggctggtcttgaactcctggccttaagcgatccaactgcctgggtctcccaaaatgctggaattacaggtgtgagccactatgcctggct s panTro1.chr19_random 38028001 300 - 57627672 TGttttttttttttttttgagacagggtctcagtctgttgcccaggctggagtgcagtggcacaatcttggctcactgccacctctgcctctgaggctcaagcaatcctcccacctcagccccctgagtaggtgggactataggcatgggccaccacacctagctaatttttgtatttattgtagaagcggggttttgccacgttgtccaggctggtcttgaactcctggccttaagcgatccaactgcctgggtctcccaaaatgctgggattacaggtgtgagccactatgcctggct a score=873.0 s hg17.chr17_random 9667 3 + 2618010 GAG s panTro1.chr19_random 38028301 3 - 57627672 GAG s canFam1.chr9 41052415 3 - 53642819 GAG a score=91.0 s hg17.chr17_random 9670 1 + 2618010 A s canFam1.chr9 41052418 1 - 53642819 A a score=273.0 s hg17.chr17_random 9670 1 + 2618010 A s panTro1.chr19_random 38028304 1 - 57627672 A s mm5.chr11 101246744 1 + 121648857 A a score=32179.0 s hg17.chr17_random 9671 75 + 2618010 GCCAGTTTTTAAACACAAACATCCCTGGACCTTCCCTCCTTGTTTTATTGACTCTTCAGTAAAG-----GCAGCAAAAAC s panTro1.chr19_random 38028305 75 - 57627672 GCCAGTTTTTAAATACAAACATCCCTGGACCTTCCCTCCTTGTTTTATTGACTCTTCAGTAAAG-----GCAGCAAAAAC s mm5.chr11 101246745 77 + 121648857 AAAAATCTTTAAATACAAACATCTCTGGATGATCCCTTTATGTT---TTGATTCTTAAGTTGAGTAACTGTAACAAAAAT s rn3.chr10 90609796 77 + 110733352 GAAAATCTTTAAATATAAACATCTCTGGATCTTCCCTTTACATT---TTGTTTCTTAAATTGAATGAATGTAACAAAAAC s canFam1.chr9 41052419 71 - 53642819 GCCAGTTTTGAAAT----ACATCCCTGGACCTTCCTTCCCCACTCTATTGACGCATGGATAAAG-----ACAGCAAAAAT a score=8629.0 s hg17.chr17_random 9746 95 + 2618010 TCAACCCAAACAGTC----------------------------ATAATTAGGAAGTTAAATCCATTATGGGA---AAAAACACTATAAAACCAAACT--AATTATTTTTAATTCTCTGGTGAATCTAT s panTro1.chr19_random 38028380 95 - 57627672 TCAACCCAAACAGTC----------------------------ATAATTAGGAAGTTAAATCCATTATGGGA---AAAAACACTATAAAACCAAACA--AATTATTTTTAATTCTCTGGTGAATCTAT s rn3.chr10 90609939 117 + 110733352 TCAACAGAAAAGCTCTCCTCTTCCGTGTGCCAACAAGCAGAGAACAGTTATGAAATTAAATAACTTACAG-----ATCTATACCACAAACCCAGAGA--GAAAGAATGTAAGTCTCTAATGCGT---- s canFam1.chr9 41052501 91 - 53642819 TTAACCCAAAGT-------------------------------ATAA-TAGGATGTTTAATCTATTATAAAAAATACATATATTCTAAAATGAGAGTACAATTATTTTTCATTATC-----AATTTGT a score=3438.0 s hg17.chr17_random 9841 23 + 2618010 CTGAATCATTCTT--GTCTCCTAAT s panTro1.chr19_random 38028475 23 - 57627672 CTGAATCATTCTT--GTCTCCTAAT s mm5.chr11 101247160 22 + 121648857 CTGGGTCATTGTC---TCTACTATT s rn3.chr10 90610056 25 + 110733352 CTGGGCCACTGTCTCGCCTACTAGT s canFam1.chr9 41052592 20 - 53642819 GTGTGTCATTGCT----CTGTTGT- a score=42720.0 s hg17.chr17_random 9864 142 + 2618010 AGTAGGGAAAATGCTGGAGCCTTGACTATAATGTAAACCATTCTCCCCAAAAGCTAGACATTTCCGTTTATTGACACCACTTGATATAGGTGGGGACA--TGACCAGACTGAAGCCAACATTTCT--AGCTTGCCTGTGGCTAAAG s panTro1.chr19_random 38028498 142 - 57627672 AGTAGGGAAAATGCTGGAGCCTTGACTATAATGTAAACCATTCTCCCCAAAAGCTAGACATTTCCGTTTATTGACACCACTTGATGTAGGTGGGGACA--TGACCAGACTGAAGCCAACATTTCT--AGCTTGCCTGTGGCTAAAG s mm5.chr11 101247182 100 + 121648857 CGTATAGAAAATGTGAGAGCCCTAAATATAATAAAGAGTGCTC--------------------------------------------AGGAAGGGAGAGGTGACCTGAATGAAGCCAGTTTCTCT--AGCTGGATTGTGGCTAGAG s rn3.chr10 90610388 100 + 110733352 AGAAAAGAAAATGTGGGAGCCCTGACTATAGTACGAAATGCTC--------------------------------------------AGGAAGGGGGAGGTGGCCTGAATGAAGCCGGTTTCTCT--AGCTGGATTGTGGCTAAAG s canFam1.chr9 41052612 141 - 53642819 GGCATGGCAGATGGTGGAGCCTTAACTAGGATTTAAACCACTC--TCGGGGAGCTAAACATTTCCCTTTATTAGTACCACTTGATGTAGGCGTGGAG---CCACCCAACTGAAGCTGGTCTCTCTCCAGGTTGACTATGACTGAAA a score=147856.0 s hg17.chr17_random 10006 385 + 2618010 AGGAAA--ATGGGGTAGAATGTAGCCCTTATGA----TGGAACCCTAAATCCAGACATGTGATCTGGATCAGAAATGTGAAGCCTCTGTAGAGAATTTGGCACTGCTGTGCTGTGTTTACTATTTCTCCACTGTTGCCATAAGTGCCTTTTCAATTTACTTTCCATATTGTGTCTTTCTGAAAGGAGCTCTCCTTGTGTACA-------TCATCA-----TGGTTCCCCAGGAGTGGATTTACCAGTTACCATACCAGAAGTTTCTTCAGTCCCTGATCAGATCAGAGGAGGTAATGATCAGCCTAAGCTTTTTCTCTTTTTCTCTGCTCCTGTCTA----ATGGAAACCAGGTATAAATAGCCTCTCTCTCTTCGTGATTCTTGGTGGTTTTTTGAAACTTGCCCT s panTro1.chr19_random 38028640 385 - 57627672 AGGAAA--ATGGGGTAGAATGTAGCCCTTATGA----TGGAACCCTAAATCCAGACATGTGATCTGGATCAGAAATGTGAAGCCTCTGTAGAGAATTTGGCACTGCTGTGCTGTGTTTACTATTTCTCCACTGTTGCCATAAGTGCCTTTTCAATTTACTTTCCATATTGTGTCTTTCTGAAAGGAGCTCTCCTTGTGTACA-------TCATCA-----TGGTTCCCCAGGAGTGGATTTACCAGTTACCATACCAGAAGTTTCTTCAGTCCCTGATCAGATCAGAGGAGGTAATGATCAGCCTAAGCTTTTTCTCTTTTTCTCTGCTCCTGTCTA----ATGGAAACCAGGTATAAATAGCCTCTCTCTCTTCGTGATTCTTGGTGGTTTTTAGAAACTTGCCCT s mm5.chr11 101247282 337 + 121648857 AGGACATCAGAGAGTGGAACTCAGTCCTTCTGACCTTCACACTGCCAGATTCACACATG---ATGGGATCA-------GCAGCC---------------ACGCTGCTGCAC----TCTCCTAGTGCT----TGTGGCTA-------CTCTTCAGCTCACCTTCACTGTTCTCTCTTTCT-AAAGGAGCGCCCCTTGTGGACAGTGTGAGTCATCAGGAGTGGATTCACCAGGAGTGGATTCACCAGCTACCATGCACGAAGTTCCCCCAGCCCCTGATGACATCAGAGGAGGTAAG-------CCAGGCTCTCTCCCT-------TGCTCCTTTCCAGTGGACGGACACCAGGTATGAAGAGGCTCTCCGTTTCTGAGACCCGTGGC------------CTTG---T s rn3.chr10 90610601 362 + 110733352 AAGAAA--TCAGAGTGGAATGCAGTCCTTCTGAC---CACACTGCCAAGTTCACATGTG---ATGGGATCAGAAAGGTGAAGCC----CACAGAATCCAGCACTGCTGCAC--TGTTTACTGTTCTC---ATACCACTA-------CTTTTCAACTTAGCTCCAATACTCTTTCTTTCT-AAAGGAGCGCCCCTTGTGGACA-------GTATGA-----GG---CACCACGAGTGGATTCACCAGTTACCATCCAAGAAGTTCTCCCAGTCCCCGATCACGTCAGAGGAGGTAATGCCACGCTTGATCTTCGCCTCCCTCCCTCTGCTGCTTTCTA----GCGGATATCAGGTATCAACAGGCTCTATGTTTTTGAGA-TCGTGGCCTTGTTCAGAGACATTCCCT s canFam1.chr9 41052753 382 - 53642819 AGGAAA--ACC-AGTAGAGTG-AGCCCTTTCTA----CCTGATCCCTACCTCAGACATGAGATCTGGATCAGAAAAGTGAAGCCTTTATAGAGAATCTGGTACTGCTGTGCCACGTGCACTGTTTCTCCAGTGTTCCCATAGGTGCCTTTTCAACTGACTTTCAATATTGTGTCTTTCTGAAAGGAGCTCTCCTTGTGCACA-------GCCTGA-----TGGTTCCCCGGGAGTGGATTTACCTGTTATCATACCAGAAGTTTCTTCAGTCCCTGATCAGATCAGAGGAGGTAATGACCAGCCTGCACTTGATGTCTTTTTCTGTGCTCCTGTCTG----AT-GACACCAGGCATAAATAGGCATTGTGTCTTTGTGATTCTTGGCATTATTCAGAAACCTGCCCT a score=91.0 s hg17.chr17_random 10391 1 + 2618010 T s canFam1.chr9 41053135 1 - 53642819 T a score=1719.0 s hg17.chr17_random 10391 6 + 2618010 TCACAg s panTro1.chr19_random 38029025 6 - 57627672 TCACAg s mm5.chr11 101247619 6 + 121648857 TCACAG a score=27156.0 s hg17.chr17_random 10397 299 + 2618010 gccaggcgtggtggctcacacctgtaatcccaacactttgggaggccaaggcaggcggatcatagggtcaggagttcgagaccagcctggccaacatagtgaaaccctgtctctactaaaaaatagcaaaaattaaccaggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcacatgaacctgggaggcggaggttggagtgagccgagatcgcaccattgctctccagcccgggcaacagtgcgagactccgtctgaaaaaa-----aaaaaaaaaaaa s panTro1.chr19_random 38029031 304 - 57627672 gccgggcgtggtggctcacacctgtaatcccaacactttgggaggccaaggcaggcggatcatagggtcaggagttcgagaccagcctggccaacatagtgaaaccctgtctctactaaaaaatagcaaaaattagccaggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaatcacatgaatctgggaggcggaggttggagtgagccgagatcgcaccattgcactccagcccaggcaacagtgcgagactccgtcttaaaaaaaaaacaaaaaaaaaaaa a score=1484.0 s hg17.chr17_random 10696 6 + 2618010 CTTGCC s panTro1.chr19_random 38029335 6 - 57627672 CTTGCC s mm5.chr11 101247627 6 + 121648857 TTTGCC a score=1868.0 s hg17.chr17_random 10702 6 + 2618010 CTTCAC s panTro1.chr19_random 38029341 6 - 57627672 CTTCAC s mm5.chr11 101247633 6 + 121648857 TCTCCC s rn3.chr10 90610963 6 + 110733352 CTTCCC a score=13568.0 s hg17.chr17_random 10708 46 + 2618010 TCTCTCCATGCTCCTCCTGCATACTCT-AATTTCTATTCTCTGGCTG s panTro1.chr19_random 38029347 46 - 57627672 TCTCTCCATGCTCCTCCTGCATACTCT-AATTTCTATTCTCTGGCTG s mm5.chr11 101247639 47 + 121648857 TCTTTCTGTATGCCTCCCTCATGCTCTGGGTTTCCACTCTTTGTTTG s rn3.chr10 90610969 41 + 110733352 TCTTTCTGTATTCCTCCCTCATGCTGG-GGTTTCTACCCTTA----- s canFam1.chr9 41053139 39 - 53642819 TTTTTCTGTGGCCCTCCCTCCTTTTCT-GTTCTCCAGCTT------- a score=244141.0 s hg17.chr17_random 10754 646 + 2618010 --AATATATTG--TTAGACCTCATAGAGgtag--------------tggaaagaacacaggctttggagccaaac-aatctaggttccagctccatctccccctttcct--------gacta-----gcagttcagcaggtttctaatggctgtgagtctgttttcttactacaa--------------------------------------------------------------------------------------------------aatA-----------------------TATCAGTG---------------------------------------------------------------TGTTAGGATTATAGAGTTGATTTTTCTGATTCAATAAACAATCATCTTGCATTGCATTTCTGGACAGTTTCTCCTTATC----ACTTAAA-CTACCCTTAAAACTTCCCAAATACTTT---------AAAAAAAAAAAAAAAAGACTTCAAACACTGTGATCAGATTGCCACCTGC--CTCAATAATAGCCTTGCTGTGAGTTAGGAAACAGTAGGTGCTTATGGATGCTGCATCTAACCAACAGCTCTTTTGCTTTTAGAGCCCAGAGGCTCATCAGGACTTGTAAACAGCAGACAGAAGAGCTATGACCACTCAAGGTAAC--AACCTTGTGCAGTCTCTTTTTTCAGAAGCAGGTGGATATTCTTGTATTCCTTCTGCTTAAAAGAGCCTCTCACAGTATGTACC---CATCTTCAGAGAGCA------------GAGAAGGGGAGCCTTTGTTCCGTCTTATTCTTGTTTCTTCTAAAGGCTTTGAGCAACACTGAACAAACGGCTAAAGCTGATGTTTA s panTro1.chr19_random 38029393 647 - 57627672 --AATATATTG--TTAGACCTCATAGAGgtag--------------tggaaagaacacaggctttggagccaaac-aatctaggttccagctccatctccccctttcct--------gacta-----gcagttcagcaggtttctaatggctgtgagtctgttttcttactacaa--------------------------------------------------------------------------------------------------aaCA-----------------------TATCAGTG---------------------------------------------------------------TGTTAGGATTATAGAGTTGATTTTTCTGATTCAATAAACAATCATCTTGCATTGCATTTCTGGACAGTTTCTCCTTATC----ACTTAAA-CTACCCTTAAAACTTCCCAAATACTTT-------A-AAAAAAAAAAAAAAAAGACTTCAAACACTGTGATCAGATTGCCACCTGC--CTCAATAATAGCCTTGCTGTGAGTTAGGAAACAGTAGGTGCTTATGGATGCTGCATCTAACCAACAGCTCTTTTGCTTTTAGAGCCCAGAGGCTCATCAGGACTTGTAAACAGCAGACAGAAGAGCTATGACCACTCAAGGTAAC--AACCTTGTGCAGTCTCTTTTTTCAGAAGCAGGTGGATATTCTTGTATTCCTTCTGCTTAAAAGAGCCTCTCACAGTATGTACC---CATCTTCAGAGAGCA------------GAGAAGGGGAGCCTTTGTTCCGTCTTATTCTTGTTTCTTCTAAAGGCTTTGAGCAACACTGAACAAATGGCTAAAGCTGATGTTTA s mm5.chr11 101247837 736 + 121648857 --AGCCTGTTG---CAGACCTTGCAGAGGTGGGCACTGTGCTGTGCTGGGAAGA--GCAGCCTTGGAAGCCAGCC-A------GCTCCAGCTCCAGTTTTGCTTTTCCTCA----CAGACTAATGCGGCAGCTCAGCTGGTTTGTGATGCCTTCAGGACTGCGCCCTTATTTTAGGTCTCAGGACTGTAGAACTGTGAAGG---AGTCAGGAGG-TCCCCACTCAAGGTCACTTCCTCTTCCAAAAAATGCCCAACCTAAAACTCTGCGAACTAACA-----------------------CATCAGGG---------------------------------------------------------------TTACAGGATTAGAGGGTT-ATTTTTCT-ACTCAATGA--------TGTCCCCAGCATTTCTAGACAATTTGTCTTCCTCTGTGACTTAAA-TCAGCCACAGACCTTTCTAAA-ACTTAAAAGAGGA-AAAGAAAGGAGAAAAAAACTAAAGACACCCCCATTAACTTGCCGCCTGC--CTTGATAATA-----------------------------GCTTGTGGGTGCTGCAGCTAACCAACAGCTCTTTTGCTTTTAGAGCCCAGAGGCTCAACAGGACTCGCAAACAGCAGACAGAGGAGCTGTGACCACTCAAGGTAAC--GACCTTGTGAAGTCTCTTCTTG-AGAAACAGGAAGACATCCCAGCATTGCTTCTGCTTGAATGAGCCTCTGAGAGCAGGTGGCGAGCACCTTAAATGAGCACCTTCCAAGCACAGGAAGGAGCACCCTCATTCCTCCTTGTTCTTA---CGTCTGACACTTATGAGCACCACCG-GCAGAGAGCTAAAGCTCATGCTTA s rn3.chr10 90611010 723 + 110733352 --AGTGTATCT--GGAAACCTTACAGAGGTAGACACTGCACTGTGCTGGG-AGAGCGCAGCCTTGGAAGCAGGCC-AGCCTAGGCTCCAGCTCGATTT--ACTTTGCTTCA---GCAGAGTAATGCAGCAGCTCAGCTAGTTTGTGGTGCCAGCAGGTCTGTCCCCTCATTAGAGGTCTCAGGACTATAGTACTGTGAAGGAGCAGTAAGGAGGTTCCCCACTCATTGTCGCTTCCTCTTTCTAAAAGTGCCAAAGCTAAAACAGAACT----AACA-----------------------CATCAGAG---------------------------------------------------------------TTAGAGGATTAGAGAATT-AGTTTTCT-ACTCAATGA--TGTCCTCTTGTATAGCATTTCTAGACAATTTGTCTTCCTCGGTGACTTAAA-TCACCCACAGAACTTTCTAAA-ACTTAAAAGAGGACAAGAAAGGAGGAAGAAGACTTCAG--ACCTCCATTAACTTGCCGCCTGC--CTCAGTAATA-----------------------------GCGTGTGGGTGCTGCAGCTAACC-ACAGCTCTTTTGCTTTTAGAGCCCAGAGGCTCAACAGGACTCGCAAACAGCCGACAGAAGAGCTGTGACCACTCAAGGTAAA--GACCTTGTGAAGTCTCCTCTTG-AGAAGCAGGAAGACCTCCCAGCATTGCTTCTGCTTAAATGAGCCTCTCAGAGCATGTGCA-------------GAGCA-----------CAGGAAGGAGCACCCTCATTCCTCCTTGTCTTT----CTTCTGAAGCTTATGTGCACCACTGGACAAAGAGCTAAAGCTTGTGCTTA s canFam1.chr9 41053178 751 - 53642819 AATATTTATTAAATGAGACCTCAcagaggtgggcattgtgctacagtggaaagaacacagactgtggtgctagactagtctaggtttcaggcccagctccacctttccacactgtgtgacct-tgaagcagttcagcacagtcataaaacctacaggggtgttttcttatctcca-----------------------------aattaaggag-----------------------------------------------------------aatagcaccttgaagttgttagtaaaccttcaaagtcacttcccactctTAATCACAAAAACAAAACCCCAAAAGTATTTTGAAACTAATAAATGGGTTGATAAGATTTTAGACCAAGTTTTTCTGGCTCAATAAATAGTCACCTTGCATCGCA-TTCTGGAGAGTTCTTTCTTATC----ACTTAAAGCCACTTGCAAAA---TCCGAC-CCCCA-------------------AAAAAAGACT--AAGTGCTGTGATCAGATTGCTGCTTGCCTCTCAAAACTAGCTTCACTCTGAGTTA-GAAACAGTAGGCACTTGTGGATGCTGCTTCTAACCAATAGCTCTTTTGCTTTTAGAGCCCAGAGGCTCATCAGGACTTGTAAACAGCAGACAGAAGAGCTATGACCACTCAAGGTAACTGGACCTTGTGCAGCCTCTTC----AGAAGCAGGTGGATATCCTAATACTGCTTCTGCTTAAATAAGCTTCTCAAAGCATGTGCC----ACCTCCAGAGGGCA---------------AAGGAGAGCCATCATTCCTTCTTGTTCTTATTTCTTCTGATGCTTGTGAGCAACACTGAACAGAGGGCTACAGTT-ACATTTA a score=2565.0 s hg17.chr17_random 11400 9 + 2618010 AGAGTGTTC s panTro1.chr19_random 38030040 9 - 57627672 AGAGTGTTC s canFam1.chr9 41053929 9 - 53642819 AGAGTGTTC a score=20418.0 s hg17.chr17_random 11409 255 + 2618010 TGtttgggaggccgaggcgggtggatcatgaggtcaggagttcaagatcagcctggccaacatagcgaaaccccatgtctactaaaaatacaaaaattagccaggcatggtggcgggcacctgt-aatcccagctactcaggaggctgaggtggg-agaattgcttg-aacccagga-ggcggaggttgcagtgag-ctgag--attgcaccattgcact-ccagcctgg-ctgacaagtgaaacaacatcaaaaaaaaaaaaG s panTro1.chr19_random 38030049 264 - 57627672 TGtttgggaggccgaggcgggtggatcatgaggtcaggagttcaagatcagcctggccaacatagcgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggcgggcacctgtaaatcccagctactcaggaggctgaggtgggaagaattgcttgaaacccaggagggcggaggttgcagtgaacctgagaaattgcaccattgcactcccagcctggcctaacaagtgaaacaacatcaaaaaaaaaaaaG a score=1349.0 s hg17.chr17_random 11664 4 + 2618010 AGTG s panTro1.chr19_random 38030313 4 - 57627672 AGTG s mm5.chr11 101248573 4 + 121648857 AGTG s rn3.chr10 90611733 4 + 110733352 AATG s canFam1.chr9 41054062 4 - 53642819 aAGT a score=38584.0 s hg17.chr17_random 11668 176 + 2618010 TTTTATGTTTCAGACAAGGAAATAGTGTCCACAAAT-TACCTCACTCTTAGCACTGGGG-AAAAGGTAGAA--AGGTTAAGCCCAGTA---TACATTTAAATAATTTTTTCTTGGACATAC--CTGGTTCTCTGCTTCCACTCATATTAGGC-----------------------------CAGTGTCCAG--------------AAAATCACATTTCCTTTGCAAGG- s panTro1.chr19_random 38030317 176 - 57627672 TTTTATGTTTCAGACAAGGAAATAATGTCCACAAAT-TACCTCACTCTTAGCACTGGGG-AAAAGGTAGAA--AGGTTAAGCCCAGTA---TACATTTAAATAATTTTTTCTTGGACATAC--CTGGTTCTCTGCTTCCACTCATATTAGGC-----------------------------CAGTGTCCAG--------------AAAATCACATTTCCTTTGCAAGG- s mm5.chr11 101248577 165 + 121648857 CATCACTTTTTAG--------GGATTACCCTGAAATCCACCTCACCTGTAATGCCCAAG---AAGACAAGC--AGGCCAAGCCCCAGG---TGCATCTAGCTGGTTTTCTT----ACATACCGCTGCCTCTCTGGTCCCTGCCGTCTCAGAT-----------------------------CAGAATCCAG-------------AAAAATCACATTTCCTTTGCCAG-- s rn3.chr10 90611737 164 + 110733352 TTTCACTTTGTAG--------GGATTACCCTAAAATTCACCTTACCTGTGATGCCCAGG---AAGCCAGGC--AGGTCAAGCCCCGGGTGCTGCGTCTACCT-GTTTTCTCTTAGATACAG--CTGCCTCTCTGGTCCC-----TGTCAGAT-----------------------------CAGAATCCAG-------------AAAAAACACATTTCCTTTGCCAG-- s canFam1.chr9 41054066 198 - 53642819 TTCCATATTCCAG-------ACCAGTGTTCTCAAATTCAGCTCACCT-TAGTACCAAAAGAGAAGGCAGGA--AGGTCAAGCCCACTG---TGCATCTTAGTAACAGTTTCTTAGACACAC--CTGCCTCACTGCTCCCAGTCATCTCAGATCACTGGTAAGATGGACTCCTCCCTCACTACAGTGCCCAG--------------AAAATCACATTTCCTTTGGGGG-- s galGal2.chr27_random 711371 165 - 721164 TAATATATTTTAG-CATTAAAAGAGTGAGTACAAAT------------TAGCA-----G---AAGGCAGGGATAGCCTGATTCC-------TCCGTATCAATGATTCTTTT----GGATAA--TGGGTTATTCTCTCCAACACGAATTAAGT-----------------------------CTCAATTGAGCCCTTAGTGGGGAAAGATTTACATTTTAGGTGAAAG-A a score=76535.0 s hg17.chr17_random 11844 177 + 2618010 TGTTTTCTCTGAGA-GAATAATTGAGCAGACAAACTGTTGATATCCTTGTGTGTCCTCGATCACATTAATTTTCAGCTAGGAGTGAGAGCCATCATGGTTACCAGAGT-GGTGTGTTTCCTGCAGTGCCCCTATCTTGCTTGCACCAGTAGAGCT-GGGCCCTCCATCAAACCATGATCT s panTro1.chr19_random 38030493 173 - 57627672 TGTTTTCTCTGAGA-GAATAATTGAGCAGACAAACTGTTAATATCCTTGTGTGTCCTCGATCACATTAATTTTCAGCTAGGAGTGAGAGCCGTCATGGTTACCAGAGT-GGTGTGTTTCCTGCAGTGCCCCTAT----CTTGCACCAGTAGAGCT-GGGCCCTCCATCAAACCATGATCT s mm5.chr11 101248742 165 + 121648857 -GTTTTCTCTGAGA--------TGTACAGACAGATGGCTGATATCCAGGTGTGCCCATGACCACATTAATTTTCAGCTGGGATGGAAAACTGGCGTAGTAACTAGGGT--GTGCGTTTCCTGCAGTACTCAGGT----CTTCTGCCAGCCGAGCCAGAGCCCTGCAGCAAACCAAGATCT s rn3.chr10 90611901 165 + 110733352 -GTTTTCTCTGAGA--------TGTGCAGACAGATGGCTGGTGTCCAGGGGTGCCCAGGACCACATTAATTTTCAGCTGGGATGGAAAGCTGGTGTGGTAACTAGGGC--ATGCATTTCCTGCAGTACTCAGGT----CTTCTGTCAGCCGAGCCAGAGCCCTGCAGCAAACCAAGACCT s canFam1.chr9 41054264 171 - 53642819 TATATCCTCTAAGATGGTTAACTGAGCAGACTGCTAAATA--CCCCCTCTGTGCCCTTGACCACA-TAGTTTTCAGCTGGGACAGAAAGCTGGTATACTCACCAGAGGGGGTGTGTTTTCTGTA-TGCCCTTAT----TTTGCAGCAGTAGAGCT-GAGCTCCACATCTAACCAAGGTTC a score=22418.0 s hg17.chr17_random 12021 121 + 2618010 GTAGCTATAAAGCTGATAATGAAAGCAATT-GTGTTCTC---------TTTTTCCATCTAA----TTTTTTCTCTTAAGGAAATCTTA------TTCCAAGGATTAGAGCCCAGATTATCTTGTAAAAAGGTAATGATTTG s panTro1.chr19_random 38030666 126 - 57627672 GTAGCTATAAAGCTGATAATGAAAGCAATT-GTGTTCTC---------TTTTTCCATCTAA----TTTTTTCTCTTAAGGAAATCTTA-TTTTCTTCCAAGGATTAGAGCCCAGATTATCTTGTAAAAAGGTAATGATTTG s mm5.chr11 101248907 111 + 121648857 GTAGCT------------ATGAAAACATTTCATTCTCTC---------TTTTTACATCTGATTTTTTTTTTCTTTTAAGGATACCTTA-TTTTTCTTTCGAGATTATCACCCACATTATCTTGT---AAGGTCATG----- s rn3.chr10 90612066 110 + 110733352 GTAGCT------------ATGAAAACAGTTCATTCTCT----------TTTTTACATCTGA--TTTTTTTTCTTTTAAGGATACCTCTTTTTTTCTTTTGAGAATAGCACCCACATTATCTTGT---AAGGTCATGA---- s canFam1.chr9 41054435 115 - 53642819 GTAGCTGTAAAACTACT-AGAAAAACGGTC-ACATTCT------------------CCCGG----GGTCACACCCCAGGGAAATC-CA-TTTTCTTTCAAGGATTAGAGCCCAGATTATCTTGTAGGAAGATAATGGTTTG s danRer1.chr12 13117219 121 + 24175710 GTAGCACACGAACTGCCTATTGAATCATGC-ATGTTCACTTGCAGCTGTTCTTCCTCTTAG----CTTTGCTTCATGACTGATTCTTA--------ACAGTAATTTT--CTCTTGTCCTCTTGTTTTGTTGGCACG----- a score=4284.0 s hg17.chr17_random 12142 17 + 2618010 TGTTTGTTTGGGGAGAT s panTro1.chr19_random 38030792 17 - 57627672 TGTTTGTTTGGGGAGAT s mm5.chr11 101249018 16 + 121648857 -TTTTATTAGGGGAGAT s rn3.chr10 90612176 16 + 110733352 -TTTTATTTGGGGAGAT s canFam1.chr9 41054550 16 - 53642819 TGGTT-TTTAGGGAAAT s fr1.chrUn 104603036 11 - 349519338 ------TGCATGAATAT s danRer1.chr12 13117340 15 + 24175710 AGACTGTTGGGGCAT-- a score=22115.0 s hg17.chr17_random 12159 32 + 2618010 AATTTGGTTTT--------------------------CC------------TCTGCAGG---CACCATCATGG s panTro1.chr19_random 38030809 32 - 57627672 AATTTGGTTTT--------------------------CC------------TCTGCAGG---CACCATCATGG s mm5.chr11 101249034 32 + 121648857 AATTTGGTTTT--------------------------CC------------TCTGTAGG---CACCACAATGG s rn3.chr10 90612192 32 + 110733352 AATTTGGTTTT--------------------------CC------------TCTGTAGG---CACCACAATGG s canFam1.chr9 41054566 35 - 53642819 AATGTGGTTTT--------------------------CC------------TCCCCAGGCACCACCACCATGG s galGal2.chr27_random 711536 58 - 721164 AATACGGCTTTTGCTGACACAAATGTAATACCTAACCTT------------TCTGCAGA---CATCCACAAGG s fr1.chrUn 104603053 25 - 349519338 CATTGGGTCTT--------------------------CT----------------CAGG---CACCC---TGG s danRer1.chr12 13117355 44 + 24175710 GACCTTGTGTT--------------------------CCTGTTTTTGATGTTCTGCAGG---GCACGTAATGG a score=1314.0 s hg17.chr17_random 12191 1 + 2618010 G s panTro1.chr19_random 38030841 1 - 57627672 G s mm5.chr11 101249066 1 + 121648857 G s rn3.chr10 90612224 1 + 110733352 G s canFam1.chr9 41054601 1 - 53642819 G s galGal2.chr27_random 711594 1 - 721164 A s fr1.chrUn 104603078 1 - 349519338 G a score=156200.0 s hg17.chr17_random 12192 98 + 2618010 AGCAGCATTGCTGGAGGACTGGTGAAGGGGGCTTTGTCTGTTGCTGCCTCTGCATACAAGGCCCTGTTTGCTGGGCCACCAGTCACTGCACAGGTCAG s panTro1.chr19_random 38030842 98 - 57627672 AGCAGCATTGCTGGAGGACTGGTGAAGGGGGCTTTGTCTGTTGCTGCCTCTGCATACAAGGCCCTGTTTGCTGGGCCACCAGTCACTGCACAGGTCAG s mm5.chr11 101249067 97 + 121648857 AGCAGCATTGCTGGAGGACTGGTGAAGGGGGCTTTGTCTGTTGCTGCCTCTGCGTACAAGGCCCTGTTTTCTGGGCCACCAGTCACTGCACAGGTCA- s rn3.chr10 90612225 97 + 110733352 AGCAGCATTGCTGGAGGACTGGTGAAAGGGGCTTTGTCTGTTGCTGCCTCTGCGTACAAGGCCCTGTTTTCTGGGCCACCAGTCACTGCACAGGTCA- s canFam1.chr9 41054602 97 - 53642819 AGCAGCATTGCTGGAGGACTGGTGAAGGGGGCTTTATCTGTTGCTGCTTCTGCGTATAAGGCCTTGTTTGCTGGGCCACCAGTCACTGCCCAGGTCA- s galGal2.chr27_random 711595 98 - 721164 GGCAGCATTGCAGGAGATCTAGTTAAAGGAGCTTTGTCAGTTGCTGCCTCTGCCTACAAAGCATTATTTGCTGGACCACCTATTACAGAACAGGTAAA s fr1.chrUn 104603079 89 - 349519338 ATCACCA------GCGGCCTGATGAAAGGAGCTCTGTCAGTGGCTGCTTCTGCCTACAAAGCCCTGTTCACCGG---ACAAGGTCCCACCCAGGTCAG s danRer1.chr3 17324778 98 - 31142523 AACAGCATCACAGGTGGATTAGTGAAGGGTGCCCTGTCTGTGGCAGCATCTGCCTATAAAGCTCTTTTCACTGGACAGACTGGCTCTGAAAAGGTGAG a score=4832.0 s hg17.chr17_random 12290 5 + 2618010 TGTGT s panTro1.chr19_random 38030940 5 - 57627672 TGTGT s mm5.chr11 101249164 4 + 121648857 -GTGT s rn3.chr10 90612322 4 + 110733352 -GTGT s canFam1.chr9 41054699 4 - 53642819 -GTGT s galGal2.chr27_random 711693 5 - 721164 AATGT s danRer1.chr3 17324876 5 - 31142523 TTTAT a score=22007.0 s hg17.chr17_random 12295 55 + 2618010 GTGTTTTA---------------TTTTCCTGAATCTCAA-CTCCATGTCACCAGTGAAAGTGATGG----CATCT s panTro1.chr19_random 38030945 55 - 57627672 GTGTTTTA---------------TTTTCCTGAATCTCAA-CTCCATGTCACCAGTGAAAGTGATGG----CATCT s mm5.chr11 101249168 58 + 121648857 GTGGTTTC---------------TTTTCCTTAACTTCAGCCCCCAAGTCACCAGTGCAAATGGCAG--TCCTTCT s rn3.chr10 90612326 60 + 110733352 GTGGTTTC---------------TTTTCCTTAATTTCAGCCCCTTAGTCACTAGTGCAAATGGCAGTGTCTTTCT s canFam1.chr9 41054703 53 - 53642819 ATGTTTTC---------------TTTTCCTGTACCAAAG---CCACGTCACCAGTGACAATGATGC----TCCct s galGal2.chr27_random 711698 65 - 721164 CTTTTTCCCGTGTTCTGTATGAGTTTTACCGAATTCCAG------TGTTAAAAGTGTAGGTGTTGG----TACCT a score=9767.0 s hg17.chr17_random 12350 26 + 2618010 GTCTGGGTTgaagagtaacatggcat s panTro1.chr19_random 38031000 26 - 57627672 GTCTGGGTTGAAGAGTAACATGGCAT s mm5.chr11 101249226 24 + 121648857 GTCTGGATTGGCAATTAACATGGC-- s rn3.chr10 90612386 12 + 110733352 GTCTGGATTGGC-------------- s canFam1.chr9 41054756 26 - 53642819 gtctgggttggagagtagtatggcat a score=8353.0 s hg17.chr17_random 12376 45 + 2618010 tgtggaaagggcataggctttagatttagtctttagttaacacac s panTro1.chr19_random 38031026 45 - 57627672 TGTGGAAAGGGCATAGGCTTTAGATTTAGTCTTCAGTTAACACAC s mm5.chr11 101249250 37 + 121648857 -----AAGGACTATGTG---TAGACAGTCTCTTTAATGAACACAC s rn3.chr10 90612398 37 + 110733352 -----AATAACTGTGTG---TAAACATTCTCTTTAATGAACACAC a score=1179.0 s hg17.chr17_random 12421 13 + 2618010 aacacaactctgc s panTro1.chr19_random 38031071 13 - 57627672 AACACAACTCTGC s mm5.chr11 101249287 7 + 121648857 AGC------CTGC a score=8811.0 s hg17.chr17_random 12434 113 + 2618010 cactt-tttttttttttttttgagacgaagtctcgctctgttgcccaggctggg--gtgcagtggcg-cgatctc-ggctcactgcaagctccacctcctgggttcacaccattctcc s panTro1.chr19_random 38031084 118 - 57627672 CACTTAtttttttttttttttgagacgaagtctcgctctgttgcccaggctggggtgtgcaatggcgtcaatctcgggctcactgcaagctccacctcctgggttcacaccattctcc a score=129.0 s hg17.chr17_random 12736 4 + 2618010 aact s rn3.chr10 90612435 4 + 110733352 AGCC a score=91.0 s hg17.chr17_random 12739 1 + 2618010 t s canFam1.chr9 41054782 1 - 53642819 t a score=17271.0 s hg17.chr17_random 12740 133 + 2618010 ctgccactttctaactatatgactttagccaagttacttaaGGGAAGAAAAGAGAAGAATGTATTATTGATGATCTATTAATATTTTCTATAGAGAGAAGCTATTCCA---------GGTGTTGGCACTATGGCATGAATAA s mm5.chr11 101249294 133 + 121648857 CCGCCATTTCCTATCATTTTAA--TTAATTAAGCTACTCTGGGAAAAACAGGAAAAGAACCTAAGATTTGT------TGAAGACTGCATGTACAAAGTTGCTGTTCTACAACAACGTAGTGGACATACTACGGGAT-AATAA s rn3.chr10 90612439 130 + 110733352 CTGCCGTTTCCTAGCGTT------TTAATCAAGTCACTCTGGGGAGAAAAGGAAAAGAACCTAAGATTTGT------GGAAGGCCTAATACATATACCGAGCGTTCTACAACAGTGTAGTGTAGGTACGACAGGGTGTGTAA s canFam1.chr9 41054783 130 - 53642819 ctgccactttttagctgtagaactttagccaagttatttaaGTGAGGAAAGGAAAAAGACCTaatgtttgt------agaagacctattatgtgtggggggggctcttcca------agtaccagtgctacaaggtgaaaaa a score=1470.0 s hg17.chr17_random 12873 9 + 2618010 AACAC-CAGT s rn3.chr10 90612569 10 + 110733352 GACACACAGT s canFam1.chr9 41054913 9 - 53642819 gacac-cagt a score=282.0 s hg17.chr17_random 12882 3 + 2618010 TCT s rn3.chr10 90612579 3 + 110733352 TCT a score=40148.0 s hg17.chr17_random 13013 480 + 2618010 tttaaaaattagataagta--tggccgg---tacagtggctcacacctgtaatcccagcactttgggaggccgaggcaggccggatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggcaggcacctgtagtcccagctactcgggaggctgaggcaggagaattgcttgatccagggagtcagagcttgcagtgagccgagatggcaccacagcactccagcctggcgacagaacaagactccatcttaaaaaaaaaaaaaaaaaagtatgatggcatgcacctacagtcccagttacttgggaaactaaggtgggaggatcacttgagcaccggaggttgaggctgccgtagtgagccacaatggagccactgcactccagcttgggtgactgagcgagaccctgtctcaaaaaacaacaacaaaaaa s panTro1.chr19 41770914 474 + 82489036 TTTAAAAATTTGACAAATAACTggccgggcgtg--gtggctcacgcctgtaatcccagcactttgggaggccgaggtagggtggatcacgaggtcaggagatcaagaccgtcctggcctacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaattgcttgatccagggagtcagagcttgcagtgagccgagatggcaccacagcactccagcctggcgacagaacaagactccatcttaaaaaaaaa---------GTAtgatggcatgcacctacagtcccagttacttgggaaactaaggtgggaggatcacttgagcacaggaggttgaggctgctgtagtgagccacaatggagccactgcactccagcttgggtgaccgagtgagaccctgcctcaaaaaacaacaacaaaaaa a score=1286.0 s hg17.chr17_random 13493 9 + 2618010 GACACTGAG s panTro1.chr19 41771388 9 + 82489036 GACACTGAG s mm5.chr11 101249427 9 + 121648857 GACACACAT a score=11361.0 s hg17.chr17_random 13502 71 + 2618010 TCTTGCCCAGAAACTATGGGAAACAAGTGAGGTGCATGGATACTTAAAGTACATAGTAAGATACTATGCTg s panTro1.chr19 41771397 71 + 82489036 TCTTGCCCAGAAACTATGGGAAACAAGTGAGGTGCATGGATACTTAAAGTACATAGTAAGATACTATGCTg s mm5.chr11 101249436 69 + 121648857 TCCTGTCAAACAACTGTAGGGAATTGGCAAAGTATAT--ACATTTCCAGGACAGGATAGGACACTGTGCTA s canFam1.chr9 41054922 49 - 53642819 ccctgcccaaagactgtgggacacaaacgtgataaac----------agtaccatgtaa------------ a score=27129.0 s hg17.chr17_random 13573 291 + 2618010 gccgggtgtggtggctcatgcctgtaatcccagcactttggaaggctgaggcgggcggatcgtgaggtcaggagttcgagaccatcctggccaacatgatgaaaccccgtctctactaaaaatacaaaaattagccaggcatggtgatgtgtgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagctgagattgtgctactgcactccagcctgggcaacagagtgagactccatctcaaaaaaaagaaa s panTro1.chr19 41771468 291 + 82489036 gccgggtgtggtggctcatgcctgtaatcccagcactttggaaggctgaggcgggtggatcacaaggtcaggagttcgagaccatcctggccaacatgatgaaaccccgtctctactaaaaatacaaaaattagccaggcatggtgatgtgtgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggtggagtttgcagtgagctgagattgtgctactgcactccagcctgggcaacagagtgagactccatctcaaaaaaaagaaa a score=18782.0 s hg17.chr17_random 13864 92 + 2618010 GATACTATGCCAGTGCTATCAGACAGATGAAACACTtcagcctgg---------tgtgcccaagtaaggctttctggta-gatgatgcctgaactgagtcct s panTro1.chr19 41771759 92 + 82489036 GATACTATGCCAGTGCTATCAGACAGATGAAACACTtcagcctgg---------tgtgcccaagtaaggctttctggta-gatgatgcctgaactgagtcct s rn3.chr10 90612630 71 + 110733352 GACACTGTGTTAGTG-----------------CGTCTCCCCCTAC---------TAGGTCC----AAGGCTTCCTGGGA-GTTCGTATCTGAACTGAAGCCT s canFam1.chr9 41054971 97 - 53642819 ggttctgcgccagtgttct----cccatgaaacacctctctgtgggcctctgcatgggccagag-aaggcttcctggtaggatgatgcctgaattgagtcct a score=10055.0 s hg17.chr17_random 13956 30 + 2618010 aaaggacggagtaaatgttcatcaggaaag s panTro1.chr19 41771851 30 + 82489036 aaaggacggagtaaatgttcatcaggaaag s rn3.chr10 90612701 30 + 110733352 GAAGCACAAAGCAAGTATATCCCAGGAAAG s canFam1.chr9 41055264 30 - 53642819 AAAGGACAAAATGAGTATGTGTCAGGAAAG a score=13163.0 s hg17.chr17_random 13986 76 + 2618010 agggagggaaagggtattgtagacagtg--tagccagtaaaaaagacttggaaatgtgagcatggagtgtGAATCCGG s panTro1.chr19 41771881 76 + 82489036 aggaagggaaagggcattgtagacagtg--tagccagtaaaaaagacttggaaatgtgagcatggagtgtGAATCCGG s canFam1.chr9 41055294 75 - 53642819 AGGAATAGAAAGAGCATTGT-GACAGAGACTGGCCAGT-AAAAAGAGTTGGAAATGTTAGCTTGAAG-GTGAATTTGA a score=59192.0 s hg17.chr17_random 14062 648 + 2618010 TCTAAGAAGAGGAGTAAGACGAAAAAAGACTggctgggcttggtggctcacacctgtaatcccaacaggttgggaggccaaggctggtcgattatttgcgtccaggagttcaagaccagtttgggcaacagggcaaaaccctgtctctactaaaaacataaaaaattagctgggcatggtggtatacgcctgtggtcccagatactcaagaggccgaggtgggaagatcacttcagcccgggaggcagaggttgcagtgagctgagatcacaccactgaactccaatgtgggtgacagagtgagaccatgtctcaaaaaaaaaaaaaaaaaaaa-------ggctgggtgtggtggctcacgcctgtaatctcaacactttgggaggctgaggcgggtggatcatgaggtcaggagttcgagaccagcctgacccacatggtgaaaccccatctctactaaaaatacaaaaattagctaggcgtggtgacgtgcctgtaatcccagctactcaggaggccgaggcaggagaatcgctttaacctgggaggcggatgttgcagtgagccgagattgcgccactgcacttcagcctgggtgacagagcgagactctgtctcaaaaaaaaaaaaaaagaaaaagaaaaaCAgaccaaa s panTro1.chr19 41771957 653 + 82489036 TCTAAGAAGAGGAGTAAGATGAAAAAAGACTggctgggcttggtggctcacacctgtaatcccagcaggttgggaggccgaggctggtcgattatttgcgtccaggagttcaagaccagtttgggcaacagggcaaaaccctgtct--actaaaaacataaaaaattagctgggcatggtggtatacgcctgtggtcccagatactcaagaggccgaggtgggaagatcacttcagtccgggaggcagaggttgcagtgagctgagatcacaccactgaactccaatgtgggtgacagagtgagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaCAAggccgggtgtggtggctcacgcctgtaatctcaacactttgggaggctgaggcgggtggatcatgaggtcaggagttcgagaccagcctgacccacgtggtgaaaccccatctctactaaaaatacaaaaattagctaggcgtggtgacgtgcctgtaatcccagctactcaggaggccgaggcaggagaatcgcttgaacctgggaggcggatgttgcagtgagccgagattgcaccactgcacttcagcctgggtgacagagcgagactctgtctcaaaaaaaaagaaaaagaaaaagaaaaaCAgaccaaa a score=28077.0 s hg17.chr17_random 14710 165 + 2618010 tatgtaggcaggatgctgtgttatgaggtttggattttattttaaggctaattaataggaggagcaattgaa-gggttttaaggaagtgattgacatgatgagatctgtttttagtaagattac-cggctacattgtagaggctggtagagccagtaaagaaatcca s panTro1.chr19 41772610 165 + 82489036 tatgtaggcaggatgctgtgttatgaggtttggattttattttaaggctaattaataggaggagcaattgaa-gggttttaaggaagtgattgacatgatgagatctgtttttagtaagattac-cggctacattgtagaggctggtagagccagtaaagaaatcca s canFam1.chr9 41055588 160 - 53642819 TATGTAGGTGGGGTGCTGTGTTAAGTGGTTTGGATATTATTTTAAGGC----TAGTGGGAAGGGCCAGTGAATGGGCTATAGGAAAATAATTAAC---ATTAGATTCGTACCCCGTAAGATAACTCCACTACAGTGTGAAGGTTGAGGGGAGCCCTAAGGAAATCCA a score=28291.0 s hg17.chr17_random 14875 303 + 2618010 gttgggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaggagttcaagaccagcctggccaatatggtgaaaccacatctctactaaaaatacaaaaattgccgggcgtggtggcacgtgcctgtagtcctagctactcgggagtctgaggcagaagaattgcttgaacctgggaagcagaggttgcagtgagctgaaatcatgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaa--ggaaatccctaa s panTro1.chr19 41772775 305 + 82489036 gttgggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaggagttcaagaccagcctggccaatatggtgaaaccgcatctctactaaaaatacaaaaattgccggacgtggtggcacgtgcctgtagtcctagctactcgggagtctgaggcagaagaattgcttgaacctgggaagcagaggttgcagtgagctgaaatcatgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaaaaggaaatccctaa a score=16234.0 s hg17.chr17_random 15178 88 + 2618010 gagaatccatgtattggtggaaaggaagggtagaaaagataattaagagatggaaatggcataactttgagatgatgattaagtggct s panTro1.chr19 41773080 88 + 82489036 gagaatccatgtattggtggaaaggaagggtagaaaagataattaagagatggaaatggcataactttgagatgatgattaagtggct s canFam1.chr9 41055751 79 - 53642819 GAGAATCCATGTGTAGATGGAAGAAAAGGGTAGAAGAGA-----AAGA----GAAATAGCAGATCTTGAAGACCATGATTAAGAGGCT a score=28621.0 s hg17.chr17_random 15266 306 + 2618010 aaaaagaaggataggctgggcacggtggctcacatctgtaatttcagcactttgggaggccaaggtgggcagatcacttgagttcaggagtttgagaccagcctgggcaacatagtgaaaccttatct-ctacaaaaaatacaaagaaattagccggacttggtggcgcacacctgtagtcccagctacttggggggcttaggtgggagaatagcttgagccccagaggcagaggctgcagtgagctgaggtcatgccactgcactccagcctgggcaacaaagccagacactatcttggggtggag s panTro1.chr19 41773168 307 + 82489036 aaaaagaaggataggctgggcacggtggctcacatctgtaatttcagcactttgggaggccaaggtgggcagatcacttgagctcaggagtttgagaccagcctgggcaacatagtgaaaccctatcttctacaaaaaatacaaagaaattagccggacttggtggcgcacacctgtagtcccagctacttggggggcttaggtgggagaatagcttgagccccagaggcagaggctgcagtgagctgaggtcatgccactgcactccagcctgggcaacaaagccagacactatcttggggtggag a score=27515.0 s hg17.chr17_random 15572 159 + 2618010 gggaaaaagtcaaggataaatcccaagtttctggct------------tagtaccattcattaag--------------------------------agcagaagaagagaactaggtcagttttgctggacagtgttgagtttgtggcatatccaggtaaaggtaaagatatccagagtgcagctggatatatagttgtccc s panTro1.chr19 41773475 159 + 82489036 gggaaaaagtcaaggataaatcccaagtttctggct------------tagtaccattcattaag--------------------------------agcagaagaagagaactaggtcagttttgctggacagtgttgagttcgtggcatatccaggtaaaggtaaagatatccagagtgcagctggatatatagttgtccc s canFam1.chr9 41055830 193 - 53642819 Ggaaagaagtcaaggaggaatcccaagtttccggctttggacagtggatagtaccatccattaagaaagatgtacaggaagaaggatctatttgggcaggagaagaagaaaattaggtccatt----tggatggtgtggaatttgaggcatatccagctaaaat------tacctagagtgcagctgggcacatgcctgtggc a score=55506.0 s hg17.chr17_random 15731 613 + 2618010 tcagtatctatgacggttggctccaggaccccctgtgggatactgaaatccatagatgcttaagtcccttatataaaatagtgtagtatttatatataacctaggcacatcttcttgcttgcttgtttagttttagttttttagatacagggtcttgctctgtcatccaggctggagtgcaataactagattgtagctcactgcagcctagaactcttggattcaagcaatcctctcacctcagcctcttgagtagcagggactacaggtgggcaccaccatgcctagctagttttttaaaaatctttttgaagagatggggtttcactgtgttgcctagggcaactaactcctggcctcaaaacaatcctcccacttcagcctcccaaattgctgggatgagaaacttgagccgctgcacccagcccatctcatatacttcatctctacattacttacaatacccaatacaatgtaaatgctatctgaatagttgt-tatacggtattcgggaataatgacaaaaaagtttgtacgtgtt-cctttttttctccccaaatattttcagt-cctttggtgactgatccatagatgaggaacccacagataatggca s panTro1.chr19 41773634 616 + 82489036 tcagtatctatgacggttggctccaggaccccctgtgggatactgaaatccatagatgcttaagtcccttatataaaatagtgtagtatttatatataacctaggcacatcttcttgcttgcttgtttagttttagttttttagagacagggtcttgctctgtcatcccggctggagtgcaataactagattgtagctcactgcagcctagaactcttggattcaagcaatcctctcacctcagcttcttgagtagcagggactacaggtgggcaccaccatgcctagctagttttttaaaaatctttttgaagagatagggtttcactgtgttgcccagggcaactaactcctggcctcaaaacaatcctcccgcttcagcctcccaaattgctgggatgagaaacttgagccactgcacccagcccatctcatatacttcatctctacattacttacaatacccaatacaatgtaaatgctatctaaatagttgtgtatatggtattcgggaataatgacaaaaaagtttgtacgtgtttcctttttttctccccaaatattttcagttcctttggtgactgatccatagatgaggaacccacagataatggca a score=2552.0 s hg17.chr17_random 16344 21 + 2618010 agccaacggtatccatccaga s panTro1.chr19 41774250 21 + 82489036 agccaacggtatccatccaga s mm5.chr11 101250564 21 + 121648857 AGTTGGCTGTGTACACCTCCA a score=35436.0 s hg17.chr17_random 16365 151 + 2618010 tcacaggggagggatttggcctggtgatacatgcttgag----agtcacttgcctacagattatagcagaagccatctgatggaatgagatgatccaggaataatggg------gaaagcaagaagcaacc-tttaaggatcaggg--aaaggaatactctgaa----------- s panTro1.chr19 41774271 151 + 82489036 tcacaggggagggatttggcctggtgatacatgcttgag----agtcacttgcctacagattatagcagaagccatctgatggaatgagatgatccaggaataatggg------gaaagcaagaagcaacc-tttaaggatcaggg--aaaggaatactctgaa----------- s mm5.chr11 101250585 150 + 121648857 TTACAGAGGATGGATTTGACCTGAGGCTGAA-GTTTGAG----AGTCATTTACATACAGGTTCTAGCAGGAGCTGTGTGATTGGATAAGATTATCCAGGAAAAAT---------AAAAGGCAGAAGCAGCCTTTTAAGTATCAAAGCAACAGGATTCTACTAAA----------- s canFam1.chr9 41056023 155 - 53642819 tcacagaggaaaggtttgacctggag----------gaggtcaggtcatgtgtatacaggttctagtagaagccgtgtgattgggtaagagtttctgggaagatgaggtctaaagcaaaaaaaaaacagCC-TTGAAGGATCCAGG--AAAGAA-------GAAGGGCCTTGTCC a score=55929.0 s hg17.chr17_random 16516 312 + 2618010 agaaagctgggaactaggaggaaaa--tgaagagagagagttctatgctggaacttaaggaagggtgttttaataagggggacatggtcaacggtgttagatgctacagagagatatgaactggtggtgaggaatttgagagtagaAGTATGCCACACTTTCAAATAGACAGGCTACAACAGGCAGAAGCTAGGATACATA--------AGACAAGAGGAAGCATTTTTAAAGTTGGGTGAGACTTTAGAGATGGGCAAGCC-AGCAGTGAAAGAGGTTAATGATAAAGATGAGAAGACAGATTGGAGATGGAGAAAGATTTC s panTro1.chr19 41774422 311 + 82489036 agaaagctgggaactaggaggaaaa--tgaagagagagagttctatgctggaacttaaggaagg-tgttttaataagcgggacatggtcaacggtgttagatgctacagagagatATGAACTGGTGGTGAGGAATTTGAGAGTAGAAGTACGCCACACTTTCAAATAGACAGGCTACAACAGGCAGAAGCTAGGATACATA--------AGACAAGAGGAAGCATTTTTAAAGTTGGGTGAGACTTTAGAGATGGGCAAGCC-AGCAGTGAAAGAGGTTAATGATAAAGATGAGAAGACAGATTGGAGATGGAGAAAGATTTC s mm5.chr11 101250735 267 + 121648857 ACAGAACT------TAGAAGAAACA-------------GGGCCACTGCTGCAACTTGGGGAGG------TTTATAAGGGAT---CAGTAGACAGTGCTAAATGCTGCAGAGAGCTGTGACCTAATGGTGAGGAATTTGACAATTCAAGTATGCCTTGCT---AGCTACGTGGGGGAAGGAAGGTAAATATTAGTCTACATGTCTACACTAGGCAGAAGGTGGTGTTTATAAAA------GAGACTT--AAGGTTGGCAAGCCTAGCAGTGAAACATGTTATCAGTACAAATGAGA-----------------GGAAAGATTTC s rn3.chr10 90613599 288 + 110733352 AGAAGGCT----ACTAAAAGTGAACGTTAGAGGAAACAGGGCCACTGCTGGGACTTGGGGAGG------TTTATAAGGGGT---CAGTAAACAGTGCTAAATGCTGCAGAGAGCTGTGATCCGATGGTGAGGAATTTGACAATTGAAGTATGCCTTGCT---AGCTACATGGGGGA-GAAAGGTAAACACTAGTCTACATA--------AGGCAGAAGAAGTTGTTTACAAGA------CAAAC----AAGGTTGGCAAGCCCAGCAATGAAACATGTTATCAGTACAGATGAGAGGAAAGATGATAAAGAGAAAAAAATGTG s canFam1.chr9 41056178 195 - 53642819 AGGAACCTGAGACATAGGAGGATGT---------------------TCTGGAGC-CAGGGAAGGGAGCTTGAATAAGGAGG----------AGGTGCCAACACCCCCAGAGAAAGA-GAGCAAGTAAGGAGGACTTGGGGAGT---------------------------------------------GCTTGAGTAC-----------TGTC-----------------------------------AAGTTGCTGGAGCA-CACAGGGAATGA-GTTAATGGTCAAGGTGAGA--GAGGATAATTCACAGAAAGAGATTTC a score=7875.0 s hg17.chr17_random 16828 32 + 2618010 TGAAGTGGTGAGAGGTAATAAGATACAATGCA s panTro1.chr19 41774733 32 + 82489036 TGAAGTGGTGAGAGGTAATAAGATACAATGCA s mm5.chr11 101251002 32 + 121648857 TGAGGTAGTAATGGTAAAGAGAAAAAAATGTG s canFam1.chr9 41056373 32 - 53642819 TGAGGTAGTGAGAGATCACGAGATAGCAAGCA a score=8208.0 s hg17.chr17_random 16860 50 + 2618010 AGGTACATTC-----CATTAACCTGCAAAGGAGGATGGATAATCTATTCTGAAAT s panTro1.chr19 41774765 50 + 82489036 AGGTACATTC-----CATTAACCTGCAAAGGAGGATGGATAATCTATTCTGAAAT s canFam1.chr9 41056405 52 - 53642819 ATGGACTTGTGGAAGGATTATCCTGGAA---AGGATGGATAATCTATTCTGAAAT a score=22317.0 s hg17.chr17_random 16910 142 + 2618010 AAGAAGGTAGAATGGAACAGTGGAATCAGGTTTGGAGGGAAA------------tgcttaacatgtttgcatactgttctcatctttacatactttttcaacaaccctgcaaagtaggaggtatgatatatcttcagtt-----cataaaggaattgat s panTro1.chr19 41774815 142 + 82489036 AAGAAGGTAGAATGGAACAGTGGAATCAGGTTTGGAGGGAAA------------TGCTTAACATGTTTGCATACTGTTCTCATCTTTACATACTTTTTCAACAACCCTGCAAAGTAGGAGGTATGATATATCTTCAGTT-----CATAAAGGAATCGAT s canFam1.chr9 41056691 152 - 53642819 AAGAGTGAAGAGAGGAACAGTGGAGTTGGGTATAGAGAGAAAtgccagagattgtgctcgacacacgtacacactcttgtccta-------atcctctcaactagcctgccaaacaggaggtattttatatctccattttcctacataagagaattaaT a score=41448.0 s hg17.chr17_random 17052 446 + 2618010 agcacagttggtaagtaaatggaagattagggtttgagtctaagcctatctgcctcccaagttaataatctttctgctgcacagtttcagtatccccagtctgtgaaattgggataataacagaaccAGAggccaggcgaggtggctcacatctataatcccagcattttgggagaccaaagttcaaggatcacttgggcccagaagttcaagaccagcctgggcaacatagggaaacctcatctctagtaaaaaatttaaaaatttgccgggcgtggtagcgcagaccagtggtcccagctatttggaaggctgaggcaggaggatcacttgagcccaggaggttgaggctgcaatgagctgtgttcacaccactgcacaccagcctggggaacagagtgacaccctgtctcaaaaaacaaacaaaacaacaacaacaacaaAAC s panTro1.chr19 41774957 446 + 82489036 AGcacagttggtaagtaaatggaagattagggtttgagtctaagcctatctgcctccaaagttaataatctttctgctgcacagtttcagtatccccagtctgtgaaattgggataataacagaaccAGAggccaggcgaggtggctcacatctatgatcccagcattttgggagaccaaagttcaaggatcacttgagcccagaagttcaagaccagcctgggcaacatagggaaacctcatctctagtaaaaaatttaaaaatttgccgggcatggtagcgcagaccagtggtcccagctatttggaaggctgaggcaggaggatcacttgagcccaggaggttgaggctgcaatgagctgtgttcacaccactgcaaaccagcctggggaacagagtgacaccgtgtctcaaaaaacaaacaaaaCAACAACAACAACAAAAC a score=7255.0 s hg17.chr17_random 17498 39 + 2618010 AAGCGTTTAAGGATTTAGGAAGGTAATGCTTCCACCACA s panTro1.chr19 41775403 39 + 82489036 AAGCGTTTAAGGATTTAGGAAGGTAATGCTTCCACCACA s canFam1.chr9 41057466 37 - 53642819 AAGTGTT--AGGATTTGGGAAGGTTATGTGTCCACTCTA a score=-643.0 s hg17.chr17_random 17537 9 + 2618010 GGGCTTGAA------------- s panTro1.chr19 41775442 9 + 82489036 GGGCTTGAA------------- s rn3.chr10 90614243 9 + 110733352 GTGTTTCTG------------- s canFam1.chr9 41057503 22 - 53642819 GGGCTTGGCCCAAAGAGGGAGG a score=16073.0 s hg17.chr17_random 17546 23 + 2618010 TGAATGAATGTTAACTTCCTCTT s panTro1.chr19 41775451 23 + 82489036 TGAATGAATGTTAACTTCCTCTT s mm5.chr11 101251122 23 + 121648857 TAAACGGGTGTTAGCTTCCTCTT s rn3.chr10 90614252 23 + 110733352 TAAATGGGTGTTAGCATCCTCTT s canFam1.chr9 41057525 23 - 53642819 TAAAGGAGTGTTAGCTCCCTCTT a score=-123.0 s hg17.chr17_random 17569 1 + 2618010 A s canFam1.chr9 41057548 1 - 53642819 T a score=273.0 s hg17.chr17_random 17569 1 + 2618010 A s panTro1.chr19 41775474 1 + 82489036 A s mm5.chr11 101251145 1 + 121648857 A a score=-927.0 s hg17.chr17_random 17570 5 + 2618010 -----CCTAt s panTro1.chr19 41775475 5 + 82489036 -----CCTAt s canFam1.chr9 41057549 5 - 53642819 GGAAG----- a score=27606.0 s hg17.chr17_random 17575 299 + 2618010 tcttgttttttttttttt--gagatggagtctcgctctgtcacccaggctggagtgcaatggcgcgatctcggctcactgcaagctccacctcctgggttcacgccgttgtcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacgcctggctaattttttgtatttttagtagagatggggtttcactgtgttagccaggatggtctcaatctcctgacctcatgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgcacccagcc s panTro1.chr19 41775480 301 + 82489036 tcttgtttttttttttttttgagatggagtctcgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcaagctccacctcctgggttcacgccattgtcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacacctggctaattttttgtatttttagtagagatggggtttcactgtgttagccaggatggtctcaatctcctgacctcatgatccgcccacctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccagcc a score=966.0 s hg17.chr17_random 17874 19 + 2618010 CCTCTTACCTATTCTTTTG------- s panTro1.chr19 41775781 19 + 82489036 CCTCTTACCTATTCTTTTG------- s canFam1.chr9 41057554 25 - 53642819 -ATTATTTCTGTTCTTTACAAAGAAA a score=44012.0 s hg17.chr17_random 17893 217 + 2618010 --GAGGAGAAAAAATCAAGAAGCCTTCCCAGGTTGTAATTTCCCAAGCTGTTTTTTTT--GTCCAGCTCCTCTGCATATCTGACAAAATT------TCCCATAGCATCTTTCAGTAACA--CTTTTATCTTGCTCATACTTCCCCCATCATCACAATTACACTTATGTTCACAGGGTCTCTGGGGCTTGCTGTCAT----TCCTTC-------ATCTGGCCAAAAAATG----------------------------------------------------------CTTCTTCCTGA s panTro1.chr19 41775800 219 + 82489036 --GAGGAGAAAAAATCAAGAAGCCTTCCCAGGTTGTAATTTCCCAAGCTTTTTTTTTTTTGTCCAGCTCCTCTGCATATCTGACAAAATT------TCCCATAGCATCTTTCAGTAACA--CTTTTATCTTGCTCATACTTCCCCCATCATCACAATTACATTTATGTTCACAGGGTCTCTGGGGCTTGCTGTCAT----TCCTTC-------ATCTGGCCAAAAAATG----------------------------------------------------------CTTCTTCCTGA s mm5.chr11 101251165 270 + 121648857 --GAGAGTAAAAAGTCAAAAAGACTGCCCAAAATATAATTTCACAAG--------TCTACGCCCATCTTACTTGC-TATCTGGTGAGGTTC---TGTCTCAAGCCATCCTCAGGAAG------TCTCTCTTGCTCATA-TTTGCTCATTACCACTATT----TTATGTT---AAAGTCTTCGAGGCTTCTCGTCATCTTGCTCTTCAATTATTACTTGGCTGAAGAATGGGTGGTTTTGTTTGTTTGGGGTTTTGGATACAAGGGCTCATTCTGTAGCCAAACCTATGTTCTTCCTCC s rn3.chr10 90614295 175 + 110733352 --GAGAGTAAAAAGTCAAAAAGACTTAC-------------------------------------------TTATATGGCTGGTGAAGTTTTGATGTCCCATGCCAGTTTCTGGAAG----------TCTTGCTCACATCTGCTCCATCACCACAGTT----TTATGTTAACAAAGTCTTCAAGGCTTCTTGTCAT------CTTCAGTTTTTACTTGGCTGAAGATGG----------------------------------------------------------GTGGTTTCTGT s canFam1.chr9 41057579 212 - 53642819 AAGGGAAAAAAATGCCAAGAAGGTCGCCCAAGATGTCATTTCCCAAGCAGTTTCTT----GTTCAGCTCCTTTGCATAGCTGACCACACT-----------------CTCCTAGTAACAGTCTCTGCTCCTGCCTACACTGGCCCCATCCACACAGTTAACTTTATCTTCACAGAGTTTCCAGTGCTTGTTTGTATCTTTTCCTTC-------ATTAGGCCAAAGAATG----------------------------------------------------------CCTCCTTCCAA a score=4612.0 s hg17.chr17_random 18110 47 + 2618010 AAGC--------CCCGAGTGAAGCATTCTCC------TGGTTCTAAGTACAGTTCATT-----AGC s panTro1.chr19 41776019 47 + 82489036 AAGT--------CCCGAGTGAAGCATTCTCC------TAGTTCTAAGTACAGTTCATT-----AGC s mm5.chr11 101251435 55 + 121648857 AAGCAGGAATCGCAGGTGTGAGCCACTGTGC-----------CTGAGCGCGCTGCTTTCAGAAAGT s canFam1.chr9 41057791 53 - 53642819 ATGC--------CCCCTTTGGAGCTTCCTCCTCCTCCTAGTTCTGAAGATAGTTCATT-----AGT a score=36001.0 s hg17.chr17_random 18157 222 + 2618010 TCCCCG--GTTTCCCTTTTCTC---CTCCTTCAAGTACACAGATAACTAATCTAAAATAGGGCCTTCCCAGTCC---------GAACCGTTGG--TATCAAGTACACAGGAGTG----CCATAGCCTTGAATCTAATTACCTAGTACTTTGAATAAATCTGGAAAGACTAGTATG-CTTGCAAGATGATACAAATGtataaaataaacatttaaattatacagaatttttt--tttttttttttG s panTro1.chr19 41776066 217 + 82489036 TCCCCG--GTTTCCCTTTTCTC---CTCCTTCAAGTACACAGATAA----TCTAAAATAGGGCCTTCCCAGTCC---------GAACCGTTGG--TATCAAGTACACAGGAGTG----CCATAGCCTTGAATCTAATTACCTAGTACTTTGAATAAATCTGGAAAGACTAGTATG-CTTGCAAGATGATACAAATGTATAAAATAAACATTTAAATTATACAGAATTTTTTGGTTTTTTTT---G s mm5.chr11 101251490 199 + 121648857 CCTCTGAAGCATCCTCTGTCACCCTCTCCTTCAGTTACGCACACACATAGTCAGCAGCA---------CTGTCA---------ACCCCATTGACTTGTTAGGGAAACAGGAAAG----TTGTGCCCTTGCATCTGATCACCCAACACTTTGAATAAGGA-GGAAACACTAGGATG----ACAGTGTAATACAGATTTGCAAAGAAG-----CAAATTATATAGAAAAATGT-------------- s rn3.chr10 90614607 176 + 110733352 TCCTCG--GTTACCCT---------CTCCTTCAGTTACACACACAT--GGTCAGGGGCA---------CTCTCG---------ACCCCA-TGACTTGTT---------GAAAAG----TTGTGTCCTTGCATCTAATTACCTAACACTTTGAATAAGGA-GGAAAGACTAGGATG----ACAGTGTGATACAAATTTGCAAAGAAG-----CAAATTATACAGAAAAATGT-------------- s canFam1.chr9 41057844 199 - 53642819 ----------TGCC-----------CAGTTTCGGATATAAACCTACAGAATCCAGAGCTGGGCATCCCCAGTCCTCCCTCATGGGCCCAGTAG--TGTCAGGTGGACAGGAGTGCCATCCATACCCTTGCTTTGAATTCCCTAATA-----AATAGATCTGGAAAGATTTGTGTGATTTGCAAGATAACA---ATTTACGAGGCACA----TAAATGATTCAGAAAATGTT-----------CTG a score=30006.0 s hg17.chr17_random 18379 38 + 2618010 CTTTGCTTGTCTCTACACAGCCAATAATTTCTGAAGAT s panTro1.chr19 41776283 38 + 82489036 CTTTGCTTGTCTCTACACAGCCAATAGTTTCTGAAGAT s mm5.chr11 101251689 36 + 121648857 --CTCCTTGTCTCTGCACAGCCCATCGTTTCTGAAGAT s rn3.chr10 90614783 36 + 110733352 --CTCCTTGTCTTTGCACAGCCCGTCATTTCTGAAGAT s canFam1.chr9 41058043 38 - 53642819 CTTTTCTTGACTCTACACAGCCAATAGTTTCTGAAGAT s galGal2.chr27_random 712074 37 - 721164 CTTGTTTTGTTTCTAT-CAGCCTGCAGCTACAGAAGAG a score=7872.0 s hg17.chr17_random 18417 5 + 2618010 CAGAC s panTro1.chr19 41776321 5 + 82489036 CAGAC s mm5.chr11 101251725 5 + 121648857 CAGAC s rn3.chr10 90614819 5 + 110733352 CAGAC s canFam1.chr9 41058081 5 - 53642819 CAGAC s galGal2.chr27_random 712111 5 - 721164 CACAC s fr1.chrUn 104603248 5 - 349519338 CACAC a score=221507.0 s hg17.chr17_random 18422 151 + 2618010 AGCA-GCCCTGATGGCCCATCTCTTTGAAATGGGATTCTGTGACAGGCAGCTGAACCTACGGCTGCTGAAGAAACACAATTACAATATCCTGC-AGGTTGTGACAGAACTTCTTCAGTTAAACAACAACGACTGGTACAGCCAACGCTATTGA s panTro1.chr19 41776326 152 + 82489036 AGCA-GCCCTGATGGCCCATCTCTTTGAAATGGGATTCTGTGACAGGCAGCTGAACCTACGGCTGCTGAAGAAACACAATTACAATATCCTGCCAGGTTGTGACAGAACTTCTTCAGTTAAACAACAACGACTGGTACAGCCAACGCTATTGA s mm5.chr11 101251730 151 + 121648857 CACA-GCCCTGATGGCCCATCTCTTTGAAATGGGATTCTGCGACAGGCAGCTGAACCTAAGGCTGCTGAGAAAACACAATTACAATATCCTGC-AGGTTGTGACAGAGCTCCTTCAAGTGAATAACAACGACTGGTACAGCCACCGCTATTGA s rn3.chr10 90614824 151 + 110733352 CGCA-GCCCTGATGGCCCATCTCTTTGAAATGGGATTCTGCGACAGGCAGCTGAACCTAAGACTGCTGAGAAAACACAATCACAATATCCTGC-AGGTTGTGACAGAGCTCCTCCAAGTGAACAACAACGACTGGTACAGCCACCGCTATTGA s canFam1.chr9 41058086 151 - 53642819 AGCA-GCTCTGATGGCCCATCTCTTCGAAATGGGATTCTGTGACAGGCAGCTGAACCTCAGGCTGCTGAAGAAGCACAATTATAACATCTTAC-AGGTTGTGACAGAACTGCTTCAGGTCAACAACAATGACTGGTACAGCCACCGCTACTGA s galGal2.chr27_random 712116 151 - 721164 TGCT-GCTCTTCTATCCAGTCTGTGTGAGATGGGATTCTGTGACAGGCAGTTAAACCTGCGACTGCTGAAGAAACACAACAATAATATGGTTC-AAGTGGTAACTGAGTTGCTTCAGATCAGTAACAGCGACTGGTACAGCAATAGATGCTGA s fr1.chrUn 104603253 152 - 349519338 AGGACACCATGATGGCTGTGCTGGTGGAGATGGGCTTTGGGGACCGGACCCTAAACCAACGGCTGCTGAACAAGTACAACTTCAACCTGCTGG-ACGTCGTCAACGAGCTCGTTCAGATGAGCGACAATGACTGGTACTCCACCCGCTACTGA s danRer1.chr3 17327398 151 - 31142523 AGAC-GCCATGATGGCGGTGCTGGTGGAGATGGGCTTCGGTGATCGAGCTCTAAACCAACGTCTACTGCAGAAACACAACCGCAACCTGCTGG-ACGTGGTAAACGAACTGGTGCAGATGACCGACAACGACTGGTACACGACACGCTACTGA a score=100.0 s hg17.chr17_random 18573 1 + 2618010 G s danRer1.chr3 17327549 1 - 31142523 G a score=-4005.0 s hg17.chr17_random 18573 1 + 2618010 G------------------- s panTro1.chr19 41776478 1 + 82489036 G------------------- s mm5.chr11 101251881 1 + 121648857 G------------------- s rn3.chr10 90614975 1 + 110733352 G------------------- s canFam1.chr9 41058237 1 - 53642819 G------------------- s galGal2.chr27_random 712267 20 - 721164 ACCTTCATGGTTGGAGGGAT a score=2573.0 s hg17.chr17_random 18574 3 + 2618010 GAG s panTro1.chr19 41776479 3 + 82489036 GAG s mm5.chr11 101251882 3 + 121648857 GAC s rn3.chr10 90614976 3 + 110733352 GAC s canFam1.chr9 41058238 3 - 53642819 GAG s galGal2.chr27_random 712287 3 - 721164 GAA s danRer1.chr12 13119000 3 + 24175710 AAG a score=286976.0 s hg17.chr17_random 18577 835 + 2618010 TGACCTTGTATTAAATAAC--TGCCTGCTGCTCA-------------GAGATGATCT---TTATTCTGTCATTGGGGTATGGGATAGAAGCCCTTGCTTA--TTTTTAATCTGATGAATCTGTATAGAGCCCATCGTTGAGTTACCAAGACAATACCTG--CTACAGTATTTTGGGGAGCAAACTAAAGACCAGAACTTAAATTTTCACTTT---AGACATTGGATGAATAGTATGAAGACAGTTT--------TTCAGTTGATTTGGAT-------AAAACTAT---------TTTAGTGCATTGACAAGTG-TAACTTCAACTTCATATAGAACCATTTTT-----------CTTTCTGCTTTTATTGAAACTGAGTATTTTTCTTTGGCT-AATGTGGATTTTTT--ATGGG-------GATATCTGTTAA--TTTTCAGGTTTTGAAAGACATTAAC--CTCGGAAGTTGTTTT--------TAAGAATTATTCTCATAATTCTTATTCTCATAATTTC---------TGTAATCCACCTCAAGCTTCATAGTTAT--TTGGCATTGAAATAACACCCAGAGCATGATAGAAATGTTGTTACTCTTCCTCTCTCAAGGAGAAAGTAATTTTCCTGCAATACTTAAT-AATTGGCACCG--TTGCTTTCTAAAGACTCCA-TGGTGCATTCAAGAGTAT-CCAACTTCAAGGGAATCTCCGCATTTCAATGAAAGGAGG-AAGAGTGTGCT-GATAAACCTACCAGCACCTATTGAGCAATGTCTATTATAGTAATTTTG--CATACATTT----TTATTTAAGGGAAAAAATA----TAGGTATTGTGAAATATTTTGCTAA-----------TCTTATAGAAAAGGAA------AAAAT--CCC-------GTTATTTAAAGGGAAAA----------GTAAATTTAACAGTTGCCTTTTTTCT-TAATGTCAGGGCA s panTro1.chr19 41776482 820 + 82489036 TGACCTTGTATTAAATAAC--TGCCTGCTGCTCA-------------GAGATGATCT---TTATTCTGTCCTTGGGGTATGGGATAGAAGCCCTTGCTTA--TTTTTAATCTGATGAATCTGTATAGAGCCCATCGTTGAGTTACCAAGACAATACCTG--TTACAGTATTTTGGGGAGCAAACTAAAGACCAGAACTTAAATTTTCACTTT---AGACATCGGATGAATAGTATGAAGACAGTTT--------TTCAGTTGATTTGGAT-------AAAACTAT---------TTTAGTGCATTGACAAGTG-TAACTTCAACTTCATATAGAACCATTTTT-----------CTTTCTGCTTTTATTGAAACTGAGTATTTTTCTTTGGTT-AATGTGGATTTTTT--ATGGG-------GATATCTGTTAA--TTTTCAGGTTTTGAAAGACATTAAC--CTCGGAAGTTGTTTT--------TAAGAATTATTCTCATAATT---------------TC---------TGTAATCCACCTCAAGCTTCATAGTTAT--TTGGCATTGAAATAACACCCAGAGCATGATAGAAATGTTGTTACTCTTCCTCTCTCAAGGAGAAAGTAATTTTCCTGCAATACTTAAT-AATTGGCACCG--TTGCTTTCTAAAGACTCCA-TGGTGCATTCAAGAGTAT-CCAACTTCAAGGGAATCTCCGCATTTCAATGAAAGGAGG-AAGAGTGTGCT-GATAAACCTACCAGCACCTATTGAGCAATGTCTATTATAGTAATTTTG--CATACATTT----TTATTTAAGGGAAAAAATA----TAGGTATTGTGAAATATTTTGCTAA-----------TCTTATAGAAAAGGAA------AAAAT--CCT-------GTTATTTAAAGGGAAAA----------GTAAATTTAACAGTTGCCTTTTTTCT-TAATGTCAGGGCA s mm5.chr11 101251885 721 + 121648857 TGACCTTGTATTAAATAAC--TGCCTGCCGCTCA-------------GAGGTGGTCT---CTCTGCTGTCATT-GAGTGTGGG-TGGAAGCCCTTGCTTG-CTTTTTAATCTGATGAATCTAT---------GTCTCTGAATTGTCAAAACAGTACCTG--TTACAGTATTTTTTGGAGCAAATCAAAGGCCAGAACTTAAATTTTCACTGT---AGAAATGGGATGAATGGTAGGAAGACAG-TT--------TTCAACTCAGCTGGAC-------AGAACTCT---CGCCGCTGTAGTCCGTGGAAGCGAG-TAACTTGGACTTCCT-TAG-ATCGCTTTT-----------CCTTCTGCTTGTATTGAAATTGAGTATTTTCCTTTGGTT-CATGTGGATGTTTTTAATGGG-CTGTTAAATATTAGTTTG--GTTTTTGTTTTTTAAAG--ATTAAC--CTTGAA---TGTTTC--------CAAGAATTATTCACCT---------------AGTTTC---------TATAACCAATCGCAAGCCTCATAGCTA-------CATAAAGACAG----CAGATCA----------------------------------AGAAAGTCATGTTCCTCAAAGACTTAGA-AATGAGGAACACTTTGCTTTCAGAAGGC------------------------CTAGC-----AGGAACC------------TGGAAGGACA-GGAGGCATTCG-GGTTAACCCA-CAGCACCCACTGAGCAGTGTCTGTCAAAGTAATTTTG--CATAAA-TT----TTATTTAAGG--AGAATCC----TGGGTAGTGTGAAATATTTTGCTAA-----------TCCTATGGGGGGGGCA-------------CCT-------GTTACAGAAAGGGAAAG----------------TTAGTAGTCGTCCTTTTACT-GACTGTCACAGTG s rn3.chr10 90614979 733 + 110733352 TGGCCTCGTATTAAATAAC--TGCCTGCCGCTCA-------------GAGGTGGTCTGTGCCGTCATGTCATTGAGGTGTGGG-TGGAAGCCCTTGCTTG-CTTTTTAATCTGATGAATCTATGTCGAGC--GTCCCTGAATTGTCAAAGCCGTACCTG--TTACAGTATTTTTTGGAGC-AATCAAAGGCCAGAACTTAAATTTTCACTTT---AGAAAT-GGATGAATGGTAGGAAGACAG-TT--------TTCAACTGATCTGGAC-------AGAACTCT---CTCTGCTGTAGTATGTGGAAGCGTG-TAACTTGGACTTCCTGTAG-ACTGCTTCT-----------CCTTCTGCTTGTATTGAAGTTGAGTATTTTCCTTTGGTT-TATGTGGATGTTTTTAATGGG-CTGTTAAATGTTAGTTTGGTTTTTCTGTTTTTTAAAG--ATTAAC--CTTGAA---TGTTTT--------CAAGAATTATTCT------------------AATTTC---------TATAACCAACCCCAAGCTTCATAGCTA-------TGTAAAGACAG----CAGATCA----------------------------------AGAAAGTCATGTCCCTAAAAGACTTAGTAAATAAGTAACACTTTGCTTTCAGAAGAC------------------------CTGGC-----AGGAACC------------TGGAAGGATG-GCAGGCATGCT-GGTTAACCCA-CAGCACCTACTGGACAGCGTCTGTCAAAGTAACTCTG--CATACATTT-------TTTAAGG-AAAAATCC----TGGGTAGTGTGAAATATTTTGCTAG-----------TCCTATAAAGAGGGGG------AAACCCACCT-------GTTGGAGAAAGGGAACG----------------TTAACATCATCTTTTTTTC-----TGTCACAGCA s canFam1.chr9 41058241 812 - 53642819 TGGCCTTGTATTAAATCACTTTGCCTGCTGCTCA-------------GAGATGATCT---TTATTCTGTCCTGGGGGCGTAGGGGAGAAGCCCTGGATGATTTTTTTAATCTGATGAATATAT--AGAACCCATTATTGAACTACCAAGACAGTACCTGCATTACAGTATTTTCTGGAGCAAATCAAAGACCAGAACCGAAA-------CAG---AGACATTGGATGAATTGTAGGAAAACT--TT--------TTCAGTTGATTTGGAC-------AAAGCTCCTGTCTCCATTTTAGTGCATTGAAGAGCATTAACTTGAACTTCCTATAGAACCATTTTT-----------CTTTCTGCTTGTATCAAAGTTGAGTATTTTTCTTTGGTTAAATGTGGATGTTTCT-ATGGG-------GATATCTG------TTGTCAGTTTTTAAAAGAAATTAAC--CTTGGAAGTTGTTTT--------CAAGAATTCTTAC------------------AATTTT---------TCTAGCCTACCCCAAGCCTCATATCTAT--GTGGTATTGAAATGACACCCAGAGCC------CCGTCTTGTTAATCTTCCTTGCTCAAG-GACAAGTCATTTCCCTGTAAGACGTAGTAAATCAGCA-----CTGTTTTCTAAAGACCCCACTGGTACATTCAAGAAGAT-CCACTTTCTAGG---TCTCTACACTTCAGTGAGAGGAGGAGGGAGTGTGCTCAGTTAACCCACCAGCATCTATTGAGCAGTGTTTACTGTAGTAATTTTG--CATACATTTTTCTTTGTTTAAGGGAACAAATTTAAGTAGGTAGTGTGAAATATTTTGCTAA-----------TCCTATAGAGAAGGGG------AAAAC--------------TATTAAAAGGAAAAG------------AAATGTAACAGTTACCTTTTTTCT-TAATGTCAGGGCA s galGal2.chr27_random 712290 867 - 721164 TTGCCTTA-GTTGAGAAAA--TTCTCATTAAACACTACAACATTAGCAGGCTGACCT---TCA-ACTACTTTGGAGATACAGA-TA-AATCTTTGGCTTT--TCTTTGAGCTTTTGGCTTTTT------CCTCTCATGGAAATGTCAA-ACAATGCTTG--TCACAACATTTT-----ACAAATTGGAGACCTGAATTTCAACTTT-ACTTTCGCGGAAATTAGGGGTATTGAAGTTGGTAACTTTATACTGAATCCTTTTTACCTGGAAATGTTAGAGAATGAC---------TTCAGCCTGCACAC---TT-CACCTTTTACTGTATGTAA-AATACTTTTAGGCAGCTGGGAGCTCTTGTTTTGTTGACTTCTAACACATTGCTTC--CT-ATTACAGA-GTTTAAAATGCTTCTGTAAAATGTAGTCT----TGTCTAATTTACAAGAGATACCTGCTACTTGGAAACTGTTTCTTCTGATATGATAATCAATTTTGTC--------------CAGTTCATGATAAAATATAGCAGATTTAAACCTTACAAATCATTCTTGGGGCTGTGGGGGGAAGGGGGGGAGGGAGGAGATGTTGCTCATATAT-----------TAAAATTAGTCTT-------GAACCATC-AA-----------ATGACTTCTGAAAAGCCTG-AAGTTAATTTGGATGTATACCAG------GAAAATCACTGTTTCTTG-TAGTAGAATA---AAGCATAAG-AGTTAATTCAGCAGCAGCTATTAACTGTAACCATTTGTAGTAATTACAACAGTAAACTT----ATATCTAACA--AAAAATA----TAGCCTACATAAAATATTTTGTTAAAAATGGAGTTGTATTGTAGGAAGAACCTTTCTTAGAAT--CTTTGAAAAGGTTCTTTGGAGGAAAAAAAAAAAGTGTAAAAACTCAACCCCTGTGTTTTTTCTGTACTGTCCAAACA a score=251374.0 s hg17.chr17_random 19412 751 + 2618010 GATCTTATTTTACAGTACAGTGGGGGAAATAGAAACATGTGAAAGGCAAAAGGCAGGCTCCTAAATTAATGTCAGTGAAGTTCAGGGTGGGCAAATGAGTGTGTGTGAGGTATAGGAAATGCTGATGACTTCTTTAATGCTTGAAGTCCGTTCA-CAGGTATCTAGCCCTAGAATGCCTAGAACAGGAAGAGGCAGCTGGTGTTCTGCAAAACTTGGACAGGGGCAAAGTTGCTGAAAAAGTTTTGGTTTAACCCGAAGATAAGT-GGAAAAGAGCTTGTCCATGAACCCAGGTTCTCACTCTGTTTACAGAAGT--GTGTTGAGTACAGTTGGTGAAGGAAGAGGTAACAAAAAATGCTAAATATT----TTATCCATGAAAATGACTTCCAGAAAAGGAAGAATATGAACCCCAGACCGAAGGGGAAAAGATAGTT--AATAGTATTATCTAACCTGGTTGGTATTTGTAATGAATGGTGATTTTAATTAGTCATTAGCCATAATGATGTTTATTTACAGTATAACTCCTGAATGCTACTTAAATAAACCAGGATTCAAACTGCAAGCCAGCCAGGCCGTTCA-TTATTTAAAACGTTTTAATCGGGGCTTCCGGGTAGAAGGTGG--------AGCGGCAGGGTGT--------AATTGGGT-TGAT---GGGTGGGACCTGTCTTGACCATCGGAGTTTTATAATCGAGGGCCAGGAGGGCCC--GGGTTGCTCTCCTGGTTATGTATGTACTTGTACATAACCACCT-AAAGAATGGTGA s panTro1.chr19 41777302 751 + 82489036 GATCTTATTTTACAGTACAGTGGGGGAAATAGAAACATGTGAAAGGCAAAAGGCAGGCTCCTAAATTAATGTCAGTGAAGTTCAGGGTGGGCAAATGAGTGTGTGTGAGGTATAGGAAATGCTGATGACTTCTTTAATGCTTGAAGTCCGTTCA-GAGGTATCTAGCCCTAGAAAGCCTAGAACAGGAAGAGGCAGCTGGTGTTCTGCAAAACTTGGACAGGGGCAAAGTTGCTGAAAAAGTTTTGGTTTAACCCGAAGATAAGT-GGAAAAGAGCTTGTCCATGAACCCAGGTTCTCACTCTGTTTACAGAAGG--GTGTTGAGTACAGTTGGTGAAGGAAGAGGTAACAAAAAATGCTAAATATT----TTATCCATGAAAATGACTTCCAGAAAAGGAAGAATATGAACCCCAGACCGAAGGGGAAAAGATAGTT--AATAGTATTATCTAACCTGGTTGGTATTTGTAATGAATGGTGATTTTAATTAGTCATTAGCCATAATGATGTTTATTTACAGTATAACTCCGGAATGCTACTTAAATAAACCAGGATTCAAACTGCAAGCCAGCCAGGCCGTTCA-TTATTTAAAACGTTTTAATCGGGGCTTCCGGGTAGAAGGTGG--------AGCGGCAGGGTGT--------AATTGGGT-TGAT---GGGTGGGACCTGTTTTGACCATCGGAGTTTTATAATCGAGGGCCAGGAGGGCCC--GGGTTGCTCTCCTGGTTATGTATGTACTTGTACATAACCACCT-AAAGAATGGTGA s mm5.chr11 101252606 622 + 121648857 GATT--------------------GGAAGGACAAGCATGTGCAA------------------ATACTCATCTCAGTAAGGTCGGGTGTGGGTGAAAGGACAC------------AGAACTGCTGCTGACTTTCCGAATGTGTGGAATCCCCTTGTGAGGTATCCAGCCCTAGAAAGCCGAGAACAGGAAG-------TAATGCTTT--------------GGGGCTAACCCACAGAAAGG---TTAGTTTACCATTAGAATAGATGGGAAGAAGGCTCTGTCAAGAGTTCTAGGTCTCATTTAGTTTATAAAGGGAAGCTTTGGGTCCAGATGGTGAAAGAAAAGGCAACACAACA--CTAAAGATT----TTATTCATG--------TTTGAGAAAAG---GTATCTGAACTCCAGCTCAAAGGG-----GATAGTTAAAATAGTATTATTTAACTTAGTTGGTATTTATAATAAATGGCGATCTTAATTACT-------CATAAT-ATGTTTATTTACAATCTAACTCTTGAATGCTTC-TAAATAAACCACAATTCAAACTGCAAGCCAACCAAGCTGTTTA-TTGTTTAAAATGTTTT--CCTGGGGTTTGGGGTAG-AGGCAG--------AGCCCCATGATGTGAG----AAATTGGGTATATT---TGGAGGGACCTGTCC-------------------ATCTAGGTCCAG------------------TTTTTCGTTCCGT-TGTACTTGCACGTAGCAACTTAAAAGAATTGTG- s rn3.chr10 90615712 634 + 110733352 GATGGTA-----------------AGGAGGACAGGTGTGTGTAA------------------ATATTCACATCAGTAAGGTTACG---GTGCGAAGGAGGGGAC----------ACACATGCTGGTGACGTCTCGAATGTGTGTAATCCCCTTCTGAGGTGTCCA----------GCCAAGAGCAAGAAG-------TAGTGCTTG--------------GGGGCTAACCCACAGAAAGG---TCAGTTTACCACTACAGTAAGTGGGAAGAAGCTTCCTTTCAGAGTTCTAGGTCTCATTTAGTTTATAAAAGGGCACTTTGGGTACAGATGGGTACAGAGGTCACAACA-------CTAAAGATT----TTACTCCTGGTAAGAA-TTTGAGAGAAG---GAATCTGGACTCCAGTTCAAAGGGGAAA-GATAGGTGAAATAGTATTATTTAACTTAGTTGGTATTTATAATAAATGGCGATTTTAATTATT-------CATAAT-ATGTTTATTTACAGTCTAACTCTTGAATGCTTC-TAAATAAACCACAATTCAAACTGCAA-CCAACCAGGCTGTTTC-TTGTTTAAAACGTTTT--CATGGGGTTTGGGGTAA-AGGCAGAGAGAGCCAGCCGCATGGTGTGGG----TAATTGAGT-GGATTTGGAGTTGGACCTGTCTTGACC--------------ATCTGGGTCCAC------------------TTGTTCGTTCCGT-TGTACTTGCACATAGTCACTT-AAAGAATTGTGA s canFam1.chr9 41059053 724 - 53642819 GATGTTA----------CAGTTGAAAGAAGAAAA----GTGAAA-----------GGCTCTTAATCTAGTA-AAGTTAGTTCTGGGGTGGGCAAATGTGTGT----GAGGCACAGGAAATGCTGATGACTTTTCAAATGTCTGAAATCTGCTCA-AAGGTATCTAGCCTTA----GTCTAGAACAGGAGGAGGC------TGTTTTGCAAGACTAGGATGGGAACAGACT--CTGAAAAAGGTTTGGGTTAACCCCAAAACGAAT-GAGAAAGCTTGTTGCCAGGGGCCCAGGTCCTCATTCTGTTTACAGAAAGGAGTCTTGGGTATAATGGGTGAAGGAA-AGGTAACAAAAAACACTAAAAGCTACTACTATCCATGAAAGTGACTTGCAGAAAAAGAAGACTC--AACCCTCATCCAGAAGGGGAAGGATAGTA-AACTAGTATTATTTAACCTGGTTGGTATTTATAATGAATGGTGATGTTAATTAATCATTAGTCATCATGATGTTTATTTACAGTATACTTCTTGATCGCTAT-TAAATAAACCAAGATTCAGACTGCAAGCCAACCAGGCTGTTCATTTATTTAAAACGTTTTTATCCGGGCTTCTGGATAG-AGGCTG--------AGCGGCAGGGTGTGTGTAATTAATTGGGT-TGATTTCGGGCGGGACCTGCTCTGACCTCCTGAGTCGTATTGTAGGGGTCCAGGAGGACCCTAAGGTCCAGTCGTCCGTACGGT-TGTACTTGTACCTAACCGCTT-CGAGAATGGTGA a score=195805.0 s hg17.chr17_random 20163 887 + 2618010 AATAAATGTTCTTGGAAATTCCTACCCGGACTGG--CTAGTCCTTGCGGAAGCAGCGTCCGGGCCCTCGGGTAACGTTTGAAGAGCTGGCAGCGTCTCA----GGCTGCTGCGTGGCGAAGGGGCGGACCGGGGGACGGGG--GGGTGGGCCCTTAGGGGCTGGGGCGGGACTTCCCTGGGCACTGAGTCAAAGCTTGAGGGGAGTGTTC-G-CTCCCGCATTTTCGATTCCACTCTCTTCCGT-----TTCTGTCGCTGCAGTCGTCCG---CGGGTAAGGCCCTCCCTAGACCCTTTATACCTACTTTACCTTT-------CGGAGGTCAAGACACCTCCTGTTGCCGCCTCCTCGCCCAACACA--CAGGCGCCCCCCGCACGGGTACCAAGCTTGACTAACGGCCTCTAGGGGTGTGTGGTGGGACTTGAAATCCTCCCTTAATGAAGTCACACCTTC-TCCGTCCGCTTCCACCCGGTCGGCCCATGGCAGAGCCCCCATGTA-GCCCAGGAATCGGCTTGGCCCTTCGGGGAGGTCAGCGTCCTTACTATCCCCA--CTCTCCAGTGCGGCACATTCGTT-CCCCTAGGACTCC---------GGCCGGTTG-----CCGGCCCCAGGCGGTGCTTCTCCCCACCACCgcccagctcagctcagcccagcccagcccaCTCTGCCCTTAGAGGCCCTTCTCCCCAAAGACGCACTCCAGAAGTCTCGCCCTCGTGCGGCTGAGGA--GCC--TGGGAT--CCCAGACC-TGAAC-AAGGT-GAGC--ATCCCTATATTTTAGCCCAGAAAGATCTG--TGTGGCTCAC------------TTGCCGGCCTCGTTCTGTCAC-------------------ACAGAGTCCAGA--------------TTTAGCCTTGAGTTTTCC-TAGTGAAAGACAGAC-CCTGG-TATC-------ACTATGA-------------CCCTCCT------------CAGGCTTTCTTACC-CCGCCTCAG s panTro1.chr19 41778053 898 + 82489036 AATAAATGTTCTTGGAAATTCCTACCCGGACTGG--CTAGTCCTTGCGGAAGCAGCGTCCGGACCCTCGGGTAACGTTTGAAGAGCTGGCAGCGTCTCA----GGCCGCTGCGTGGCGAAGGGGCGGACCGGGGGACGGGGTGGGGTGGGCCCTTAGGGGCTGGGGCGGGACTTCCCTGGGCACTGAGTCAAAGCTTGAGGGGAGTGTTC-G-CTCCCGCATTTTCGATTCCACTCTCTTCCGT-----TTCTGTCGCCGCAGTCGTCCG---CGGGTAAGGCCCTTCCTAGACCCTTTATACCTACTTTACCTTT-------CGGAGGTCAAGACACCTCCTGTTGCCGCCTCCTCGCCCAACACA--CAGGCGCCCCCCGCACGGGTACCAAGCTTGACTAACGGCCTCTAGGGGTGTGTGGTGGGACTTGAAATCCTCCCTTAATGAAGTCACACCTTC-TCCGTCCGCTTCCACCCGGTCGGCCCATGGCAGAGCCCCCATGTA-GCCCAGGAATCGGCTTGGCCCTTCGGGGAGGTCAGCGTCCTTACTATCCCCA--CTCTCCAGTGCGGCACATTCGTT-CCCCTAGGACTCC---------GGCCGGTTG-----CCGGCCCCAGGCGGTGCTTCTCCCCACCACCgcccagctcagctcagcccagcccagcccaCTCTGCCCTTAGAGGCCCTTCTCCCCAAAGACGCACTACAGAAGTCTCGCCCTCGTGCAGCTGAGGA-AGCCCTTGGGATTCCCCAGACCCTGAACCAAGGTAGAGC-GATCCCTATATTTTAGCCCAGAAAGATCTG--TGTGGCTCAC------------TTGCCGGACTCGTTCTGCCAC-------------------ACAGAGTCCAGA--------------TTTAGCCTTGACTTTTCC-TAGTGAAAGAGGGAC-CCTGG-TATC-------ACTATGA-------------CCCTCCT------------CAGGCTTTCTTACC-CCGCCTCAG s mm5.chr11 101253228 806 + 121648857 AATACGTGTTATTTGAAACTCGTACCTGAACTAG-TTTGGTCCTGGCGATAGCAACATTTG-----TCCTGTGAGACTCGCAGAGCCGGAAGTGTCTTCCAGTGGCCTCT-CAGGAGGAGAGGGCGGGGCGGGAG-CGAGG--GGCGGGGCC-----GAGCCCGGCTTGGACTCC----------------GAGCTTGTGTTAAATGTGCAG-CTCCCGCAGTTTCGA---------------------TTTTGCTGAGGGCGTTGTCAC---CTGGTAAGGCGTCCCTGGGACCCCATCT-----CTTTACCCTTTTCAAAGCAAGAATTCAGAGACGTTTGG--GCTTACTCAGCGCCCAACACG--TTGTTGC--------------CCAAATTTGACTAACGGCC--------AGTGAGGTGGGATTTAAAATCCTTCCTCGATGAAATCCTACCTTT-TCCTTCCTTGCCTA----------CCATAGCAGAATCCCCTAGTA-------GAGAGGACTTGACCCTCCCGGTAGACAAGAGTCCCTGC--TCCCCA--CTTTCAA------CACATTGACT-CTCTCTGGTCTCC---------GCTGAATTG----------------------------------------AGCT--GTTCAAC---------TCCACCCTACCC-TAGAGGCCCTTCTCCCCAAAGGAGCATTCCAGAAAACCCAATCT--TGGAGCTGAGCAGAGCC--TGGAAT--CCCAGACC-TAAAC-CAGGT-GAGTAAGGGTCTTTATTTTAGCCCAGGAAGATGTG--AGTATCCTAAGGAG--------TTACTGCGTCATTCAAGCCACTACTCAGG---GATTGGGGGCAAAGTTCAGA--------------TTTGGCCTTGACCTTGCC-TTAGGAAGAACAGAC-TCCGA-AGTCTCAGAAAGCAATGAATGGATCAAGGCTCCCTCCCAGTCCAGTTTCACAGGGTTTCTTA-----GCCACAG s rn3.chr10 90616546 805 + 110733352 AATACAAGTTCTTTGAAACTCTTACCTGGACTAGTTTTGGTCCTTGTGATAGCAGCATTTG-----TCCTG----------GAAGCCGGAAGCGTCTTCC---GGCAGCG-TATGCC------GCCGCTCAGAAG-GAGGG--GGCGGGGCC--GAGGGGCGGGGCCGAGCCT------GGCTCGGACTCTGAGCCTGTGATAAACGTGCTG-CTCCCGCAGTTTCGA---------------------TTATGCTGAGGGCGTTGTCAACTTCTGGTAAGGCGTCCCCAGGACCCCATCT-----TTTTTCCCTTTACAAAGCAAGAATCCAGAGATGTTTGG--ACTTTCTTGGCGCCCAAAACA--TAGTCC---------------CCAAATTTGACTAACGGCC--------AGTGTGGTGGGATTT-AAATCCTTCCTCCGTGAAGTCCTACCTT--TCCTTCCTTGCCCA----------CCATAGCAGAGTCTCCTAGTA-----AAGAGGGGACTTGACCCTCCCGGTAGGCAAGAGTCCCTAC--TCCCTA--CCTTCGG------CACATTCACT-CTCTCAGGTCTCT-----------------------------CTAAAGGGAGCTGAT--------------GGCC------------------TCCACCCTACCC-TAGAGGCCCTTCT-CCCAAAGGAGCATTCCAGAAAACCCAATCT--TGCTGCCGAGAAGAGCC--TGGAAT--CCTTGATC-TAAAT-CAGGT-GAGTGAGGGTCTTTATTTTAGCCCAGGAAGACCTGAATGTGACCTAATGAG--------CTACCACTTCATCCCAGCCCCTACTCCTCAGGGTTTCGGGGGAAAGTTCAGA--------------TTTAACCTTGACCTTTCC-TAATGAAGAACAGACTCCCAA-GATCTCAGAAAGCAATGC--AGATCTAGGCTCCCTCCCAGTCCAGTTTCACAGGGTTTCTTA-----GCCACAG s canFam1.chr9 41059777 894 - 53642819 AATAAAAGTTCTTCGAAAGTCCTACCTGGACGGG--CTGGTGCTTGCGAAAGTGGCGTCCGGAAC-CCGGGCGGTCTTGGAAGAGATGAGCTCTTCTCC----GGCCAATGTAACGGGAGGGGGCGGGTCACTGG--GAGG--GGGCGGGTCCGGAGAAGCTGGGGCGGAGCCTCCCTAG--ACGGAGTCAAAGCTTGGGGCGAGCTTCTTGCCTCCCGCACTTTCGATTCTGCTTGCAGCCGTAGACGTCCTGCTGACCGCCCGGGGGT---GGGGTAAGGCTTCTC--AGATCTTCCTT-----TCTTTCCCTTTGGGAGGCAAGGGTCGAGGGACCTTC----ATTGCCTCCTAGTCTTACGCAGGCATTCGC--------GGGTTAACAGGCTCCACCAACGGCCTC------GGGTTGCCTGGAGTTGAAATTCTTC---AATGAAATCGAGCTTCTGTGGCTGCTCCTCCACTCGGGA---CCCTGGCCGAGCCCAGGAGTAAGGGCTGAAAGCAGCTTAGCCTTCTGGGGAGGCCGAGGTAGCTGC--TCCCCACTCTCTCCAAAGCTGTGTATTCGCTCCCCCCAGGACTCTGCTGAAGGGGGCCGGTAGCCTGGCCAGCCCCAGTCCATGGCCCTTTGTT---------GGCC------------------------CTGCCC-AACAAGCCCTTCTCCCCAAAGA--CATTTCAGAAGGCTCACTCT--TG--GCTGACCAGTGCC--CTGGAT-CCCCAGACC-TGAAT-CAGGT-GAGA----CACTTAATTTTGACCCAGTAAGGTCTGAGTACGGCTCACCTTGGACTCACCTTGCC-TACTCATTCTGCCACCACTCCTGAGCCTTTGAA-GAAGAATCTGGAATTTTTTTTTTTTTTTTAGCCTTTACCATTCCTTAATGAAGAATAGAC-CCTGACCATT-------GCTCCCA------------TCCTTCCC------------CAAGCATTCTTTCCTTCCCCACAG a score=52458.0 s hg17.chr17_random 21050 272 + 2618010 AAAGCAGTGAGG------TGTCTGCTTTCTCCCAGGGCTTCTTTAGATAGGGGTCTTAACCACAC------------CTGTGACCAGTCTGGCCTCCT--------CTCTC-------------CTTGATTCAAAGAA----------------------------------------TCT----------------------------------------CTTTTCT-----------------------------------------------------------------------------------------------------------------------GCCCTATCCAACTTCCTT-CCCTTAAACTGAATGACAGCTCAGCAACTTTTCCAGA---GAAAAATTAAATGCTCTGACAATCACTTATGGAAGTTCCTTAAAGTGAAGTAACTTCTGCTTTTCTTTTGTTTTCCCTTTTGTAGGCAGATTGGTCTCTT--TTAAAATA s panTro1.chr19 41778951 272 + 82489036 AAAGCAGTGAGG------TGTCTGCTTTCTCCCAGGGCTTCTTTAGATAGGGGTCTTAACCACAC------------CTGTGACCAGTCTGGCCTCCT--------CTCTC-------------CTTGATTCAAAGAA----------------------------------------TCT----------------------------------------CTTTTCT-----------------------------------------------------------------------------------------------------------------------GCCCTATCCAACTTCCTT-CCCTTAAACTGAATGACAGCTCAGCAACTTTTCCAGA---GAAAAATTAAATGCTCTGACAATCACTTATGGAAGTTCCTTAAAGTGAAGTAACTTCTGCTTTTCTTTTGTTTTCCCTTTTGTAGGCAGATTGGTCTCTT--TTAAAATA s mm5.chr11 101254232 292 + 121648857 CGAATAGAAAGA------AGCCTGCCTTCTAC-------------------ACTCCCAATCAGAT------------TTCAGGCCTATCTGCTCTGGG--------ATTTCTACAGAGTAATCACTTGATTAGAAAAGACAAAAGGACCCTTCCATAATAGGAAGCT------GTGCTTCC----------------------------------------CGCTCCT----------------------------------------------------------------------------------------------------------------------AGTCCTACCCAGCTTCCCTGTCTTTAAAATAAAGGACAGCTCAG---CTTTTCCTGGTTTAAAAAAAAAAATTCT---ACATTCACTTGCAGAAATCCCTTAAAGTGAAATAACTTCTGCTTTTCTTTGATTTCCTCT---------GAATTGAACTCTTACTTAAAAAA s rn3.chr10 90617366 321 + 110733352 -AAAC---------------CCTACTTTTCCAGCCGGACTCCCGAATGGGAGCTGCCTTCCACACTCCCAAGCGGACTTCAGGCATATCTTCCCTGGTGCTCTGAGATTTCTACAGAGTAATCACTTGATTAGGAAAGACAAAAGGACCCTT-----------AGCGACTGCTATGGTTCC----------------------------------------TGCTCCT----------------------------------------------------------------------------------------------------------------------AGTCCTACTCAGCTTCCCTTTCTTGGAAATAAATAACAGCTCAG---CTTTTCCTGGTTTAAAGAA--AAATTAT---ACATTCACTTACAGAAGTCCCTTAAATTGAAATAACTTCTGCTTTTTTTTTTTTTTTTTGGTTTTCTCTGAATTGAACTCTT--TAAAAAAA s canFam1.chr9 41060671 439 - 53642819 AAAGCAGAGAAAGAGGTTTCTCTGCTCCCTTTTAGGGCTATTTTAAG----GTTTTTAGGCACAC------------CTGTGGCCAGCCTAGCTGCCT---------TTCC-------------CCTGTTTCAAAGAA--------------------------------TCCCTGCTTCCTTATTAAGCCAGCACCTGCCCAGAGGCTCAGGAATGGAAGCTTTCCTTCCACTCCCAGGCTGGAAGATCGCAGGCATTTCTGCTTGGGTGTCCTAGACACCTCTTCAGAGTCCTCTTGTTGCAGAGGGTGAAGAGACTGGACTGCTGCCTCCCCCACCTCGCGCCAGCACTATCCA-CTTCCTT-CCCTTGAAGCAAGTGACAGCTCAGCAACTTTCCCAGA---ACAAAAACAAGTGTTCTGCCATTCACTTCTGGAAGTCCCTTCTAGTGAAATAACTTCTGCTTTTCTTTTCTCTTCCCTCTTGCAGGCAGTTTGAGCTCCC--CTGCAGTA a score=2263.0 s hg17.chr17_random 21322 35 + 2618010 ATGAAAGGAGTCGAAATGCATTGAGACTTCTG-----AGA s panTro1.chr19 41779223 35 + 82489036 ATGAAAGGAGTCGAAATGCATTGAGACTTCTG-----AGA s mm5.chr11 101254524 12 + 121648857 AAAAAAAAA----------------------------AGA s canFam1.chr9 41061110 32 - 53642819 ATGAAA--------AACATGCTGAGATTTCTGATCCCAGA a score=175226.0 s hg17.chr17_random 21357 355 + 2618010 GTCCCATGTGACCACCCAGTTTTTCACATCCTATCTTCCTTAGGCTTGAGCTTGCTTAAACTGTGGTGAAGCTCCTTGCCAGTCTTGAGAACTTCAAACCAAAATTACATCTGGCGTCAGTGCTAACAAGCT--TAGCACTG-AACTTTGGTCT-TTTCTCATTAGTGAAACCCCCGCCCCTGAAGAATGGGTAAGACGTTTTCCCAGCTGGGCTCTTGGCGGGAGGATGAGAACAAGTCAATCCTGTCCTCCAAACCAGCCATTGGCAGCAAGGCTGTCAACTACTCCAGCACCGGTAGCAGCAAGTCTTTTTGTTCCTGTGTGCCTTGTGAAGGAACTGCTGATGCCAGCTTCGTGA s panTro1.chr19 41779258 355 + 82489036 GTCCCATGTGACCACCCAGTTTTTCACATCCTGTCTTCCTTAGGCTTGAGCTTGCTTAAACTGTGGTGAAGCTCCTTGCCAGTCTTGAGAACTTCAAACCAAAATTACATCTGGCGTCAGTGCTAACAAGCT--TAGCACTG-AACTTTGGTCT-TTTCTCATTAGTGAAACCCCCGCCCCTGAAGAATGGGTAAGACGTTTTCCCAGCTGGGCTCTTGGCGGGAGGATGAGAACAAGTCAATCCTGTCCTCCAAACCAGCCATTGGCAGCAAGGCTGTCAGCTACTCCAGCACCGGTAGCAGCAAGTCTTTTTGTTCCTGTGTACCTTGTGAAGGAACTGCTGATGCCAGCTTCGTGA s mm5.chr11 101254536 332 + 121648857 GTTCCAAGGCACCTCCCAAACTGT---------TCTTCCCTAAGCAAAAGCTT-CTTAGATAATGGTAGGGCTTCTTGGCAATCTTAAAAACTTAAAAC-----------CTCACATCAGTGCTAACAGGTTAATAGCTCTG-AACCTTGTTTTATTTCTCATTAGTGAAAAATT--CCGCTGGACTATGGGTAAGGCAGTCTCCCAGCTCACCTCT---CGGAAGGATGAGGACAAGCCTATCCTACCTGATAACCCAGCCATGGCCAGCCAGGCTGCCAACTACTTCAGCACTGGTAGCAGCAAGCCAGCACACTCCTGTATGCCTTATGAAAAGGCTGCTAGTTCCAGCTTTGTGA s rn3.chr10 90617807 331 + 110733352 GCCTCAGGGCACCGCCCAAACCTT---------TCTTCCCTAAGCAAAAGCTTGCTTAGAGAATGATAGGGCTTCTTGCCAATCTTAAAACCTTAAAAG-----------CTGGCATCCATGCTAATAGGCTGAGAGCTCTGAAACCTTGTTTTATTTC---TTAGTGAAAAATC--CCACTGAACTATGGGTAAGGCATTCTCCCAGCTCACCTCT---CAGAAGGATGAGGACAAGTCTATCCTACCTGATAACCCCGCCATGGCCAGCAAGGCTGCCAACTACTTCAGCACTGGTAACAGAAAACCATCACACTCCTGTGTGCCTTGTGAAAAGGCTGCGAGTACCAGCTTTGTGA s canFam1.chr9 41061142 345 - 53642819 GTCCCATATAACTGCTCAGTTTTTCGTATCCTAGCTTCCTTGGGTGGGAGCTTGCTGAAATCGGGGTGGCACTCCTTGCCAATCTTGAGAACCCCAAACCAAAGTAACATCCGGTGTCTGTGCTAACAAGCT--TAGCACCG-AATTCTGTTCT-TTTCTCATTAGCGAAAAC----CCCCTGAATGATGGGTGAGACGTTCTCCCACTTGGGCTCT---CGGGAG---GAGAACAAGTCCATCCTGCCCCGAAGCCCAGCCACTGGCAGCAAGGCTGCCTGCTACTCCAGCACGCGAAGCAGCAAGTCTTTTTGTTTTCCCGTGCCTTGTGAAGGGGCTGCCAGTGCCAGCTTTGTGA a score=47771.0 s hg17.chr17_random 21712 45 + 2618010 CTTGTCCCACCTGCCAGGGCAGTGGCAAGATTCCCCAAGGTGAGT s panTro1.chr19 41779613 45 + 82489036 CTTGTCCCACCTGCCAGGGCAGTGGCAAGATTCCCCAAGGTGAGT s mm5.chr11 101254868 45 + 121648857 CTTGTCCTACCTGCCAAGGCAATGGGGAGATCCCCCAAGGTGAGT s rn3.chr10 90618138 45 + 110733352 CTTGTCCTACCTGCCAAGGCAATGGGGAGATCCCCCAAGGTGAGT s canFam1.chr9 41061487 45 - 53642819 CTTGTCCCACCTGCCAGGGCAGCGGGGAGATCCCTCAAGGTGAGT s danRer1.chr12 13122469 45 + 24175710 CGTGTCCTACCTGCCAGGGCACAGGACGCATCCCGAGAGGTAAGT a score=72554.0 s hg17.chr17_random 21757 301 + 2618010 GGCCCAAGGCTCTGGAAATAGCCTGGAATCCAGGGAAAGTTCTTAGCCTGTTGGCCTGGGGCAGCCCCTCTGAGTCTCCTTGGATGGGGTTAGATCTGCTCCCAGCTCTTG----ACCTCCCAGTCTCAGGCTGGCCAGGGAGAT----ACTT---AACTATCCTTGGGTTCCCTGCAAAAAC------------CTG-CCCTCCTTCCCTGGTTGTATTCTCCAGCCCCTTGTGGGAAAGAAGGATTCTAGCCACTGTGCTTCT-GAGCAACACTGTGTGTCCTAGGATTCATTCAGTTCAGGAAGTTACAAATGAACTTTCCAA s panTro1.chr19 41779658 301 + 82489036 GGCCCAAGGCTCTGGAAATAGCCTGGAATCCAGGGAAAGTTCTTAGCCTGTTGGCCTGGGGCAGCCCCTCTGAGTCTCCTTGGATGGGGTTAGATCTGCTCCCAGCTCTTG----ACCTCCCAGTCTCAGGCTGGCCAGGGAGAT----ACTT---AACTATCCTTGGGTTCCCTGCAAAAAC------------CTG-CCCTCCTTCCCTGGTTGTATTCTCCAGCCCCTTGTGGGAAAGAAGGGTTCTAGCCACTGTGCTTCT-GAGCAACACTGTGTGTCCTAGGATTCATTCAGTTCAGGAAGTTACAAATGAACTTTCCAA s mm5.chr11 101254913 227 + 121648857 AGCCCAAGGCTCTGGAAATACTCTAGAAACCAGGGAG--------------CGATCCGGATCTGCCCCTCCACATCTCCTGGAGTAGG--TAGACCT--------CTCCTA----CGTATGCAGTCTCAGGCTGGCCAAGAAG-----------------GACCCAGG----------------------------------TCCTGCTGTGGTTCTATTCCCCAGCTCCTAG-----AGGAAAGTTTCGTGTCTGTCTGTTCCTCAAGCCA------GTGTCTTGGGA---------TTTGGGAAGTTAAAAATGACCTTTTCAA s rn3.chr10 90618183 225 + 110733352 AGCCCAAGGCTCTGGAAATATCCTAGAAACCAGGGAG--------------TGAGC-AGACCTGCCCCTCTGAAGCTCCTGGAGTAGA--GAGACCT--------CACCTG--------CTGAGTCTGAGGCTGACCAAGAAA-------------AAATATCCAGG-----------------------------------CTGTGCCGTGGTTCTGTTCCTCAGCTTCTAG-----CGGAAAGTGGCTTGTTTGTTTGTTCCTCGAGCCA------GTGTCTTGGGG---------TTTAGGAAGTTAAAAATGACCTCAACAA s canFam1.chr9 41061532 284 - 53642819 GGCCCAAGGCTTTAGAGATAGCCTGGAATCCAGAAAAAGCTCTTAGCAG--CCAGCTGGTCAGGCCCGTCTGAGCCTCCTTGAATGGGGTTGGGTCT---CCCAGTTCTGGGTCCATCCCCCACCTCCAGGTCGGCCAGCAAAATGTTAACTTTTAATCTGCCCTCG------CTGCAGAGACACCTGCCCCCTGCTGCCCCTCCTGCCCTAGTTGTTCTTCCCAGCC----------CAAGGGGTCTCCAGCCTTCCTGCTCCC------------TGGGTCTTAGGA---------TTCAGGAAGTTACAAATGACCTCTCCAA a score=387.0 s hg17.chr17_random 22058 2 + 2618010 AG s panTro1.chr19 41779959 2 + 82489036 AG s rn3.chr10 90618410 2 + 110733352 GA s canFam1.chr9 41061816 2 - 53642819 AG a score=0.0 s hg17.chr17_random 22060 12 + 2618010 ATGCTGGGCATC a score=117.0 s hg17.chr17_random 22060 5 + 2618010 ATGCT s panTro1.chr19 41779961 5 + 82489036 ATGCT s rn3.chr10 90618412 3 + 110733352 ATG-- a score=2687.0 s hg17.chr17_random 22065 7 + 2618010 GGGCATC s panTro1.chr19 41779966 7 + 82489036 GGGCATC s mm5.chr11 101255306 7 + 121648857 GGCCACC s rn3.chr10 90618415 7 + 110733352 GGACACC a score=82459.0 s hg17.chr17_random 22072 229 + 2618010 TCTGATTTG-CTGGTGACTTTCAGAGATTCTTCATACC-TATTAGTG-GAAATCTCACTTCCATTCTAGAGATGGCAAAGCTGAGCTGCCAACTTTGGTAGCAGAGTCCAGTGCTTCCAGTCCTGCTCTGGGGCAGATGTGGCATGTTTCTAACATTGCTCTATGGTGTGGGTGGAGGCGTGCTTCTGGGAAGCTGGCACAGTAAATATTTGT----CACAGTTGCATCTTGGCCC s panTro1.chr19 41779973 230 + 82489036 TCTGATTTG-CTGGTGACTTTCAGAGATTCTTCATACCCTATTAGTG-GAAATCTCACTTCCATTCTAGAGATGACAAAGCTGAGCTGCCAACTTTGGTAGCAGAGTCCAGTGCTTCCAGTCCTGCTCTGGGGCAGATGTGGCATGTTTCTAACATTGCTCTATGGTGTGGGTGGAGGCGTGCTTCTGGGAAGCTGGCACAGTAAATATTTGT----CACAGTTGCATCTTGGCCC s mm5.chr11 101255313 214 + 121648857 TCTGACTTT-GTAGTGAC--TCAGTGTGTC-TCATACC-TGGTTATG-GAAGTCCCATTCCTCTCC--GAGCTG--AAAGCTGGGCTGTCAACTTCAATTTTGA----CAGTGCTCCCAATCCTGCCATGGGACAGAGGCATCGTGCTCCTGGCACTGCAAGATG----GAGTGGAGGGGCGCTTGAGGGAGGCTGGCACAGGAAATGTTTGT----CATGGGCACTCCTTGGCAT s rn3.chr10 90618422 215 + 110733352 TCTGACTTTCCTAGTGAC--TCAGTGTTTCTTCATACC-TGGTAATG-GCAGTCACATTCCTCTTT--GAGCTG--AAAGCTAGGGGGTCAACTTCAATGTTGA----TGGTGTTCTCAAGCCTGCTGTGGGACAGAGGCATCGTG-TTCTGCCACTGCTAGATG----GGATAGAGGGATACTCGGGGGAGGCTGGCATAGGACATATTTGT----CACAGGCACTTCTTGGCAT s canFam1.chr9 41061818 210 - 53642819 TCTCATTTG-CTGGTGCATTCCGGAAAT---TCACACC-TGTTAATGAAAAATCTCACCTCTATCTTAGAGCTGACAGAGTGGAGTTGCCATCTCTGTC---------CAAGGTCTCCAGTCCTGCCCTGGGGCAGAGGTGGCACGCTTCTGACTCTG-----TG----GAGTGGAGGGGTCCTTCTGGATAGCTGGCACAGCAAACAGTCCTCATGCATACTTACTTCTTGG--- a score=79857.0 s hg17.chr17_random 22301 94 + 2618010 TCCCTCTCACCTTCTCTCTCTCT----------------AGAGCTGGAGAAGCAGTTGGTGGCTCTCATTCCCTATGGGGACCAGAGGCTGAAGCCCAAGCACACGTAAG s panTro1.chr19 41780203 94 + 82489036 TCCCTCTCACCTTCTCTCTCTCT----------------AGAGCTGGAGAAGCAGTTGGTGGCTCTCATCCCCTATGGGGACCAGAGGCTGAAGCCCAAGCACACGTAAG s mm5.chr11 101255527 108 + 121648857 TCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCCCTCTGCAGAGCAAGAGAAGCAGCTGGTTGCTCTCATCCCTTATGGAGACCAAAGGCTGAAGCCCAGACGCACGTG-- s rn3.chr10 90618637 94 + 110733352 TCTCTCTCACTCTCTTTCCCTCT--------------GCAGAGCTAGAGAAGCAGCTGGTGGCCCTCATCCCTTATGGAGACCAAAGGCTGAAGCCCAGACGCACGTG-- s canFam1.chr9 41062028 95 - 53642819 -CCCTCTCACCTTCTTTCTCTCT--------------ACAGAGCTAGAGAAGCAACTAGTGGCTCTCATCCCCTATGGGGACCAGAGGCTGAAGCCCAGGCACACGTAAG s danRer1.chr12 13122598 93 + 24175710 TCTGTCTTATCTTGACATCCTC-----------------AGGTCAGGAGAACCAACTTGTGGCCGTCATTCCTTGCAGTGATCAAAGGCTGAAACCTCATCACACGTCAG a score=30607.0 s hg17.chr17_random 22395 153 + 2618010 CCCCCCTTCCTCCCCTAGCTTCACAAGCCATTGCCCCTGGGGGCTGCTCCCTTTGTCTCCCCTGTTTTGATCTCCC-------TTAATTTCTTCCTATTAGTTCTTCCATAGAAAG----CCTGAGCCTCAGAG-----------GTACCAGCTCCTTACGTCCAAGGATTTTTT s panTro1.chr19 41780297 153 + 82489036 CCCCCCTTCCTCCCCTAGCTTCACAAGCCATCGCCCCTGGGGGCTGCTCCCTTTGTCTCCCCTGTTTTGATCTCCC-------TTAATTTCTTCCTATTAGTTCTTCCATAGAAAG----CCTGAGCCTCAGAG-----------GTACCAGCTCCTTACGTCCAAGGATTTTTT s mm5.chr11 101255635 149 + 121648857 ----------------AGCTTCATA---CAT--CCCTTAGGGGCTGCCTTACCTGTCTCCCCTCTTTAGATCTCCCGGTTTGTTTGGTTTTTTTCCATTGGTTTTCATCTAG-AAG----CCCGAGTCTTACTGTGCTCAAACTTACACTACATTCGTGTTTCCAAGGATTGTTT s rn3.chr10 90618731 134 + 110733352 ----------------AGCTTTATA---TAT---CCTTAGGGGCTGCCTCACCTGTCTCTCCTCTTTTGATCTGAC-------T---TTTCCTCCCATTGGTTTTCATCTAG-AAG----CCTGCGTCCCATTATGCTCAAA---TTTATATGAATGTGTTTCCAAGGATCGTC- s canFam1.chr9 41062123 136 - 53642819 CCCTTCTTTTCACCTGAGCTCCACA--------------GGGGCTGTACTCATTGTCTCTCCCTTTCTG-CCTCCC-------CACCCCCATTCCCAATTCTTCTCCATTGG-AAGCCTCCCTGAGT-TCAGAT-----------ATACTAGATC---ATTTCCGGGGTTTTTT- a score=3562.0 s hg17.chr17_random 22548 9 + 2618010 CCTGATTTA s panTro1.chr19 41780450 9 + 82489036 CCTGATTTA s rn3.chr10 90618865 9 + 110733352 CTTGGTTAA s canFam1.chr9 41062259 9 - 53642819 CCTGGTTTA a score=846.0 s hg17.chr17_random 22557 3 + 2618010 GAA s panTro1.chr19 41780459 3 + 82489036 GAA s rn3.chr10 90618874 3 + 110733352 GAA a score=15063.0 s hg17.chr17_random 22560 182 + 2618010 GCTCCTGgaccgggtgtggtggctcatgcctgtaatcccagcacttt-gggaggccaaggcaggcagattacttgagctcaggagttcaagaccagcctgggcaacatggtgaaaccccatctctatcaaaaaaaaaaaaaaaaagaaaaaaaaaaagaaaagaaagaaagaaagaaaaaaGC s panTro1.chr19 41780462 178 + 82489036 GCTCCTGgaccaggtgtggtggctcatgcctgtaatcccagcacttttgggaggccaaggcaggcagatcacttgagctcaggagttcaagaccagcctgggcaacatggtgaaaccccatctctatcaaaaaaaaaaaaaaaaa----aaaagaaagaaa-gaaagaaagaaagaaaaaagC a score=17581.0 s hg17.chr17_random 22742 101 + 2618010 AGCAGC---TGTGGGCACAGCAGATGTCACTTGAGGCCACCTGGTGGGCTTCCTTAAGCATCACTGCTTCCAGAAAGCATGGCCCCCTCTCCAAGACAGGAAGG s panTro1.chr19 41780640 104 + 82489036 AGCAGCAGCTGTGGGCACAGCAGATGTCACTTGAGGCCACCTGGTGGGCTTCCTTAAGCATCACTGCTTCCAGAAAGCATGGCCCCCTCTCCAAGACAGGAAGG s canFam1.chr9 41062268 100 - 53642819 AGAAGT---TTGGGGCATAGCAGATGCCACCTGAGGGCACTTGGGTGTCCTCC-TGAGCTTTGGTGCTTCCAAGAAGCGTGGCTCCCTTGTGAAAACGGAGAGG a score=76023.0 s hg17.chr17_random 22843 314 + 2618010 ATCTGGTAGCTCTGCAAGTCCTCCCAGGAAGGAGGGAACAAGCATGTGGCCCTGGCTGCAATTGATTTGAAAATGTTATTTTTCTTAAGCACCTCCCT-TGCTGAGGCAGTTCAGATTTGCTTGTTTTTCTTCTAGTAGAGATGAAAAACCTATTGTCCG-----CTGTTCTGGGATACTTCAGAACCTCAG--GCAGACCTGGGGCCTACTGTG------TT---------------TGTGATCTGAGTCCATCTGACATGGAGCTCCCTCAACCTCCTCCCAAGGTCCT-GGTGTCAACCTGGGAGTCACCACCAAGCCGAACCCTCTCCGCCACCCCACTA s panTro1.chr19 41780744 313 + 82489036 ATCTGGTAGCTCTGCAAGTCCTCCCAGGAAGGAGGGAACAAGCATGTGGCCCTGGCTGCAATTGATTTGAAAATGTTATTTTTCTTAAGCACCTCCCT-TGCTGAGGCAGTTCAGATTTGCTTGTTTTTCTTCCAGTAGAGATGAAAAACCTATTGTCCG-----CTGTTCTGGGATACTTCAGAACCTCAG--GCAGACCTGGGGCCTACCGTG------TT---------------TGTGATCTGAGTCCATCTGACATGGAGCTCCCTCAACCTCCTCCCAGGGTCCT-GGTGTCAACCTGGGAGTCAC-ACCAAGCCGAACCCTCTCCGCCACCCCACTA s mm5.chr11 101256046 287 + 121648857 ATTTCATGGCTGTACAAGTCCTTCCAAGAGAGAATAAA--------TCGCCCTGGTTGC------------------------------CGCTACTTT-TGCTATTGCAGTTTA--------TGTTTCT-TTCTACGAGAGATTGAAAACAAGCTGCTCAGATCTCTGTTCTGGACCACTTTGGAACCTCAGAAGCAGCCCTGGGCTTCAGTGTG------GTGCCCATGATCCTTTATGTGGTCAGCATCCATTTACCATGGATC-CCCGTAACCTCCTCCAAAGACCCTCAGCTTCTACCTGAGAGCTGTTGCCCAGCCT--CCTCCCCAGCCACTGTACTA s rn3.chr10 90619118 285 + 110733352 ATTTCATGGCTGTGTGAATCCTTCCACGAGAGAACCAA--------TCCCCCTGGTCGC------------------------------CGCTCCCTT-TGCTATTGCAGTGTAGATCTTC-CGTTCT--TCCTAAGAGAGATTGAAAACCAGCTGCTCAGAT--CTCTTCTGGAACAGTTTGGAACCTCAGAAGCAGCCCTGGGCTTCAGTCTGGTGCCCAT------GATTCTGCATGTGGTCAGCATCCATTAAACATAAATC-AGTGTCACCCCCTCCAAAGACCCTCAGCTTCCACCTGAGAGCTGTTGCACACCT---CCTCCCCCGCCACTG----- s canFam1.chr9 41062368 259 - 53642819 ATCCCTTGACTCTGCAAGTACTTTCAGGAGGGAGGGAG--------TGGCCTTGGCTGTAGTTCATTTGGGGAAGTTATTTTTCCTGCGAGTCTCtctctgttgtggcagttcagacctgcttgttctcttcccagttgagatggaaaactagctgctcc-----ctcttctgagatacttcagaacctcaaaggcAGCCCTGGG----------------GT--------------------------TTCACTGGAGGGAGAGG-----------CAGGTCATGACCCT--GTTT--------GTGCCACCACCCTGC----CCTCCCTGACCACTG----- a score=3694.0 s hg17.chr17_random 23157 15 + 2618010 TACCAGAATTAGAAA s panTro1.chr19 41781057 15 + 82489036 TACCAGAATTAGAAA s rn3.chr10 90619403 15 + 110733352 CAAAAAAAGTCGAAA s canFam1.chr9 41062627 15 - 53642819 CACCAGCATCTGAAA a score=212.0 s hg17.chr17_random 23172 4 + 2618010 TCAg s panTro1.chr19 41781072 4 + 82489036 TCAg s rn3.chr10 90619418 4 + 110733352 CTAT a score=52253.0 s hg17.chr17_random 23176 588 + 2618010 gctgggcgtggtggtttatgcctgtaatcccagcactttggggaggccaagacaggcggatcacctgaggttaggagttcaagaccagcctggccaacatggcgaaaccctgtctctactaaaaatagaaaaattatctgggcgtggtggcagacaccagtaatcctagctacttgggaggctgaggcaggagaattgtttgaacccaggaggtggaggcttcagtgagccaagatcatgccactgcactccagcctgagcaacagagcgaggcctcatctgaaaaaaaaaaa---aaaacaaaaaaaaaCcctgtaatcccagcactttgggaggccaaggcgggcagatcacgaggtcaggagtttgagaccagcctgaccaacatggcaaaaccgc--ctctactaaaaatacaaaaattagccgggcatagtggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatggcgtgaacccgggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcttgggcgacacagcaagactccatctcaaaaaaaagaaaaaaaaaagaaa s panTro1.chr19 41781076 590 + 82489036 gctgggcgtggtggttcatgcctgtaatcccagcactttggggaggccaagacaggcggatcacctgaggttaggagttcaagaccagcctggccaacatggcgaaaccctgtctctactaaaaatagaaaaattatctgggcgtggtggcagacaccagtaatcctagctacttgggaggctgaggcaggagaattgtttgaacccaggaggtggaggcttcagtgagccaagatcacgccactgcactccagcctgagcaacagagcgaggcctcatctgaaaaaaaaaaacaaaaaacaaaaaaaaacc-tgtaatcccagcactttgggaggccaaggcgggcagatcacgaggtcaggagtttgagaccagcctgaccaacatggcaaaaccccatctctactaaaaatacaaaaattagccagtcatagtggcaggcacctgtaatcccagctactcgggaagctgaggcaggagaatggcgtgaacccgggaggtggaggttgcagggagccgagatcgtgccactgcactccagcttgggtgacagagcaagactccatctcaaaaaaaagaaaaaaaT--GAAA a score=119.0 s hg17.chr17_random 23764 2 + 2618010 TT s panTro1.chr19 41781666 2 + 82489036 TT s rn3.chr10 90619549 1 + 110733352 -C s canFam1.chr9 41062642 2 - 53642819 CT a score=157634.0 s hg17.chr17_random 23766 510 + 2618010 AGCAGTGCACATCATAAGATACTAACAAAGTACTATCTC--TTTAATGCATATCT-GAATT--TTGAATT----GGATGGATGGTGTCCTGTTC-----------------TGAATGTTAAAATTCAGAACTTCCAAATA----TGGACTTATTTCTTCTAGTGataataactagcattcattgtgcttttgccatgtg-cagggacctgtg----attagtattttttcatatattagccgataacaaattctgtgaggtcagtacaattatctgccttttaccaacaaggaaactgaga-cttaaggaggctaagtgggctgctccatgttattgggtcaatgggaacagagatctgggagtggaaaccaggctgcctgcctgccaatcctgtgctcctactcattccggg-------------------------ccacATCTGGGGAGCTAAATGTT--GTTG--GGGTA-GTGTGCAGGGGAAAGCTTTGTATATGGAGAGG-------AGTGTCTGAACCCCCTCTCCGAGTTTCCTTGGTGTTCAGACTTTTCCATTCCTCCATCCTGGGTCCTGC s panTro1.chr19 41781668 510 + 82489036 AGCAGTGCACATCATAAGATACTAACAAAGTACTATCTC--TTTAATGCATATCT-GAATT--TTAAATT----GGATGGATGGTGTCCTGTTC-----------------TGAATGTTAAAATTCAGAATTTCCAAATA----TGGACTTATTTCTTCTAGTGataataactagcattcattgtgcttttgccatgtg-cagggacctgtg----attagtattttttcatatattagctgataacaaattctgtgaggtcagtacaattatctgccttttaccaacaaggaaactgaga-cttaaggaggctaagtgggctgctccatgttattgggtcaatgggaacagagagctgggagtggaaaccaggctgcctgcctgccaatcctgtgctcctactcattccggg-------------------------ccacATCTGGGGAGCTAAATGTT--GTTG--GGGTA-GTGTGCAGGGGAAAGCTTTGTATATGGAGAGG-------AGTGTCTGAACCCCCTCTCCGAGTTTCCTTGGTGTTCAGACTTTTCCATTCCTCCATCCTGCGTCCTGC s mm5.chr11 101256872 479 + 121648857 AGCAGTGCCCCTCATAAAATGCT----GAGTCCTGTCTC-TTTTAATTCATATCTCTGATTGATTAGCAT----GGGTAAATGGTATCCCATTCAAAGAATTGGCTTTAGTTAAATATTAAAACTCAGAGCTCTCAAATAATCGTGGACTGGTTTCTAGTAGTGACCA----TAGCACTCGCTGAGATGTTGTTGTGTG-CCAGGAACAGT----------TGTTTTTTCCTCTGTGGACC-ATAGGAAATTCTATGA----AATACAGTTATCT-CCACTTACGGAC----ATCCTGGGCTTTTGAAGAGGTTAGATAG--TGTCACTGGGCATTATGTCAATGGGGATAGAGAGTTGGG-GTGAAAGCCAGGTTGCCTGCCTTCCAATCCTG------------TTCTGAA-------------------------CCACAGCTAGAGAGCTAAGTGTGCAGTTGCCAGATG-ATGTGAAAGAGAA-----CGTGTTTGGGG-------------GTCTTGAGTCCC-CTCCAGGTTTCTTTGGTGTTCAGATTTCTCTCTTCCT----------GCTTTC s rn3.chr10 90619551 504 + 110733352 AGGAGTGTCCCTCATAAAATGCT----GAGTTCTGTCTC-TTTTAATTCATATCTCCGATTGAACAGCGT----GCACAAAAGGTATCCCATTCAAAGTTTTGACTTTAATTAAATATTAAAACTCAGAGCTCTCAAATAATCATGGACCAGCTCCCAGTAGTGATAG----TAGCATTCATTGAGATCCTGCTGTGCG-CCAGGAACAGGGGATTAGTAATTTTTTTTCCTCCGTTGACC-ATAGGAAATTCTGTGAAACAGATACAATTATCT-CCACTTT---------ATCCTGGGC-TTTGAAGAGGTTAAGTAG--TGTCACTTG-CGTCGTGTCCATGGGGATAGAGAGCTGGGAGTGGAAGCCAGGTTG------TTCCAATCCCG------------TGCTAAA-------------------------CCACAGCTAGAGTGCTAAGAGTGCCGTTGCCAGCTA--TGTGCAAGAGAAACCCAGTTGTCTGGAGAGGGGGAAGAGGGGACTGAATCCC--CTCCAAGTTTCCTTGGTGTTCATATTTCCC---TCGTGGGGGTGGTGGTATGC s canFam1.chr9 41062644 543 - 53642819 GCCAGTGCCCCGCATAAGATACTAACAAGGTGTTGCCTCACCTTAATGCAGATTC-CAGTT--TTGAATTAGAAGGACAGACGATGTCCTGAGTA----------------TTAATTTTAAAATTCAGAACTCTCAAGTTCATGTGGAC--ATGTCTTCCAGTGataatagctggcatttgttgagcttttgttatgtgcccagaagctggc----tttagtgctttttcttgccttagtccataacacattctgtgaggtaggtccagttctctccattttacagacaaggaaactgagg-cctaaagaggttaagtgggttgctcagag-aaatggtccagtgggtaaagagaggtggg-atggaagccaggctgcttgcct--cagtcctgagctctgactcactTGGGGCTGCATCTGAACCTGGGCTGGTCGTCCACATCTGGGGAAGTAAATGTGCAGTCACAAGGGGCTTGCGCAGGGGAGAGCCTTGTGTAGGGACTGG-------AGTGTCCG---TCTCTGCCCACATTTCCGTGGTACTCAGACTTCTGCACTGCTCGACCCCGGGGCCTGC a score=115862.0 s hg17.chr17_random 24276 127 + 2618010 TTTCCCACAGGAAGCTCTTTGTGTTCCTGGCCGTGCTCATCTGCCTGGTGACCTCCTCCTTCATCGTCTTTTTCCTGTTTCCCCGGTCCGTCATTGTGCAGCCTGCAGGCCTCAACTCCTCCACAGT s panTro1.chr19 41782178 127 + 82489036 TTTCCCACAGGAAGCTCTTTGTGTTCCTGGCCGTGCTCATCTGCCTGGTGACCTCCTCCTTCATCGTCTTTTTCCTGTTTCCCCGGTCCGTCATTGTGCAGCCTGCAGGCCTCAACTCCTCCACAGT s mm5.chr11 101257351 127 + 121648857 TTTCACGCAGGAAGCTCTTTGTGTTCCTGTCGGTGGCCATCTGCCTGCTGATTTTCTCCCTCACCATCTTTTTCCTGTATCCCCGGCCCATTGCTGTGCGTCCTGTCGGCCTCAACTCTTCCACAGT s rn3.chr10 90620055 127 + 110733352 TTTCCCACAGGAAGCTCTCTGTGTTCCTGGCCGTGACCATCTGCCTGCTGATTTTCTCCCTCACCATCTTTTTCCTGTATCCACGGAACATTGTTGTGCATCCTGTAGGCCTCAACTCCTCTACAGT s canFam1.chr9 41063187 127 - 53642819 TTTCCCACAGGAAGCTCTTCGTGTTCCTGGCAGTGCTCATCTGCCTTGTGACCTCCTCCCTCATCGTCTTTTTCCTGTTCCCCCGGTCCATCGCCGTGCAGCCTGCAGGCCTCAACTCCTCCACAGT s danRer1.chr12 13122760 127 + 24175710 TCTCCCACAGGAAGCTGTATGTGTGTATATCGGTGGGGCTTTGCCTCCTGATCTGCTCACTGATCCTGTTTTTCCTCTTTCCCCGGAGCATGGATATGTCAGCTGTGGAGCTACAGTCATCCATGGT a score=79623.0 s hg17.chr17_random 24403 285 + 2618010 GGCCTTTGATGAGGCTGATATCTACCTCAACATAACGGTG---GGTGGGTGCCCTTGGCTCCAAACCCC---CCTTCCTAGC----AATACTTCGCTGTAACCTTTGTCCAGTGTTATGACCCTGGGCATGGGAAGCCAGAGATCTTATGGCACCCAGAGGGTGTTGGGAGCCTGAAGAGAAGT-AGGAGCAACCATGAGCTCCATGACAGATGGTAAGG-ATTGGGACTCTACACAGTAAGGGGTCAGAATCCGGGCCAGATAAGT------------------AAACCACAGGGGTG---------------------------GAGTGGGGTGACAGTG s panTro1.chr19 41782305 285 + 82489036 GGCCTTTGATGAGGCTGATATCTACCTCAACATAACGGTG---GGTGGGTGCCCTTGGCTCCAAACCCC---CCTTCCTAGC----AATACTTCGCTGTAATCTTTGTCCAGTGTTATGACCCTGGGCATGGGAAGCCAGGGATCTTATGGCACCCAGAGGGTGTTGGGAGCCTGAAGAGAAGT-AGGAGCAACCATGAGCTCCATGATAGATGGTAAGG-ATTGGGACTCTACACAGTAAGGGGTCAGAATCCGGGCCAGATAAGT------------------AAACCACAGGGGTG---------------------------GAGTGGGGTGACAGTG s mm5.chr11 101257478 285 + 121648857 AACCTTTGAAGACGCTCACGTACAGCTCAACACGACGGTACGTGGTAGCCGCTCCTCATTTCACCCCTA---CGTTCTTCTC-CAAAGCACCACCATGTAGCCTAAG-----------------GGGTA---GATACCAAGGACCTCGTGGTATGCAGACCATTCTGAG--------------------GCAA-CATGAGCTCCGTAGTAGATCGTATGGAATTGGGACTCCGAATCATGGAGGGTCAGAATCTGGACCAGATCAGTCATAGG------------AAAGAACAGGGATGTCCAGGAGAAAAAAATGGAGAGAAACAGAGTAGGGTAAAACTG s rn3.chr10 90620182 278 + 110733352 CGCCTTCGATGAAACTCATGTACAGCTCAACATGACGGTATGTGGTAGCTGCTCCCCGTTCCACCCCCA---CTTTCTTCCCCCCAAACACCTCTGTGTAGCCTATG-----------------GTGTG---GGTACCAAGGATCTTGTGGCATGCAGAAGATTCCAAG--------------------GCAA-CATGAGTCCCGTAGTAGATTGTATGGCATTGGGACTCCAAACAGTGGAGAATCAGAATCTGGGCCAGATCGATCACAGGGAAGAATAGAGAAAAAAAAAATGGTG--------------------AGAAATAGAGCAGGGTAAAACTG s canFam1.chr9 41063314 291 - 53642819 GGCCTTTGACGATACTGATATCCACCTCAACATAACGGTG---GGTGGATGCCCACACCCCTGAGCTCCATGCTGCCTTGCC----GGCAACTCCTCTTTGCCCTTGTCCAGTGTTGCAGTCCTGGACATAGGTAGCCAGAGATCTTATGGCACCCAGAGGGTGTAAAA-GCCTGGGGAGAAGCAAGGAGACACCACGGGCCGCGTAACAGATTGTGCAGGATGAGGACGGTACACAATGAAGGGTCAGAATCGGGGGTGTAGGGGG---AGAG-----------AAAACGCAGGTGTG--------------------GGAGGCAGGGCATG--------- a score=14594.0 s hg17.chr17_random 24688 75 + 2618010 CCTGAGACTCTCTGGATGGACAGGACTGAATGGAAAGAAGCTGTACAGGATGGACCTGGATCCTGAGGCAGCTTA s panTro1.chr19 41782590 75 + 82489036 CCTGAGACTCTCTGGATGGACAGGACTGAATGGAAAGAAGCTGTACAGGATGGACCTGGATCCTGAGGCAGCTTA s canFam1.chr9 41063605 73 - 53642819 TCTGAGACTCCCTGGGTGGGCAAAACCGAACAG--AGGCGCCTCACAGGATGAGACTGGATCCTGTGCCAGCTTA a score=0.0 s hg17.chr17_random 24763 3 + 2618010 ACT a score=846.0 s hg17.chr17_random 24763 3 + 2618010 ACT s panTro1.chr19 41782665 3 + 82489036 ACT s rn3.chr10 90620979 3 + 110733352 ACT a score=345.0 s hg17.chr17_random 24766 3 + 2618010 TCG s panTro1.chr19 41782668 3 + 82489036 TCG s rn3.chr10 90620982 3 + 110733352 CCT s canFam1.chr9 41063678 3 - 53642819 TTG a score=25350.0 s hg17.chr17_random 24769 155 + 2618010 TAAAGTTGACCCCTCACCATTCAATGCCCCTCCAAGGGGCTCCCAGTTTTCATCCTCTGCACCTGAAGCTTGTCATGGT--AGATGGGGCTCA----------GGCCA------------------GACAGCCAGGCTTTT--GCAACTGTTTG-GCTTTTCCTA--AGGATGGGCCATCTTCACTCCTC-- s panTro1.chr19 41782671 155 + 82489036 TAAAGTTGACCCCTCACCATTCAATGCCCCTCCAAGGGGCTCCCAGTTTTCATCCTCTGCACCTGAAGCTTGTCATGGT--AGATGGGGCTCA----------GGCCA------------------GACAGCCAGGCTTTT--GCAACTGTTTG-GCTTTTCCTA--AGGATGGGCCATCTTCACTCCTC-- s mm5.chr11 101258280 141 + 121648857 TAAAGGTGACCCCT-GTCATTAAGAG--CCTTCAGAG---------------TCCTTTGAAACTGAGGCCCAAAAGGGT-GGGGTGGGACTCA----------GGCCA------------------AAGAGCTAGGCTGAT--GCAGCTGCTTGTGCTCTCCCTACCATGGGGTGCCATCGTCACCGTTT-- s rn3.chr10 90620985 136 + 110733352 GAAAAGTGACCTTT-GCCTTTAA--GAGCCTTCAGAG---------------TCCTTTGTACCTGAGGCCAAAAAAGGGTAGGATGGGACTCA----------GGCCA------------------AAGAGACAGGCT--------GCTGCTTGTCTTCTCCCTTCCATGGGGAGCCATCGTCACCGTTT-- s canFam1.chr9 41063681 156 - 53642819 -------------------------TCTCCTCCAAGGGACTCCTGGCACTGGGCTTCAGCAGCTGAGACCCACAGTGGG---AGTGGGGCTCAGTCAGGCCGGGGCCGGGGGGGGTGGTGGGGGGCGGGAGGCAGGCGTTTGGGAAACTACT---TCTTTTC-----AAGGATGGTGATCCTTCCCACTTTC a score=3505.0 s hg17.chr17_random 24924 5 + 2618010 CCTTC s panTro1.chr19 41782826 5 + 82489036 CCTTC s mm5.chr11 101258421 5 + 121648857 CTTTC s rn3.chr10 90622372 4 + 110733352 -CTTC s canFam1.chr9 41063837 5 - 53642819 CTTTC a score=203431.0 s hg17.chr17_random 24929 345 + 2618010 CCTTGTCTTCATCCCCAGAATATCTTAAACATCTCCAATGGCAACTACTACCCCATTATGGTGACACAGCTGACCCTCGAGGTTCTGCACCTGTCCCTCGTGGTGGGGCAGGTTTCCAACAACCTTCTCCTACACATTGGCCCTTTGGCCAGTGAACAGGTGACTCCCCTCTCCCTGGCCAGCCCTGCCCACTGGTGTGTGGATGTGTGGTAGTGGGAAAGGGGCAGCTGGAGTTGGGGCTAACCCTGTGCCCATTTGGTTGACAGATGTTTTACGCAGTAGCTACCAAGATACGGGATGAAAACACATAGTGAGTACCCCTTGATCTCTTCTCCCC-------------TAGCCACT s panTro1.chr19 41782831 345 + 82489036 CCTTGTCTTCATCCCCAGAATATCTTAAACATCTCCAATGGCAACTACTACCCCATTATGGTGACACAGCTGACCCTCGAGGTTCTGCACCAGTCCCTCGTGGTGGGGCAGGTTTCCAACAACCTTCTCCTACACATTGGCCCTTTGGCCAGTGAACAGGTGACTCCCCTCTCCCTGGCCAGCCCTGCCCACTGGTGTGTGGATGTGTGGTAGTGGGAAAGGGGCAGCTGGAGTTGGGGCTAACCCTGTGCCCATTTGGTTGACAGATGTTTTATGCAGTAGCCACCAAGATACGGGATGAAAACACATAGTGAGTACCCCTTGATCTCTTCTCCCC-------------TAGCCACT s mm5.chr11 101259957 355 + 121648857 CCTTGCTGTCACCTCCAGAATGTCCTGAACATCTTCAACAGCAACTTCTATCCCATCACAGTGACACAGCTGACGGCCGAGGTGCTCCACCAGGCCTCTGTGGTAGGCCAGGTCACCAGCAGCCTCCGCCTGCACATCGGCCCATTGGCCAGTGAGCAGGTAACGTCCCTCTTCCTGGCCAGCCCTCTACACAGGCATGTA---ATGTGGTGACGGAGAGGGGCCAGCCTGAGGTACAGCTAATCTTGTGCCCCTCTGCTTGACAGATGCCTTACGAAGTTGCCAGCAGGATTTTGGATGAAAACACATAGTGAGTGCCCTTTGGTCTCCTCTCTCCTTAACCAGCTAAATAGTCACT s rn3.chr10 90622377 341 + 110733352 CCTTGCTGTCATCTCCAGAATGTCCTGAACATCACCAACAGCAACTTCTATCCCGTCACAGTGACACAGCTGACGGCCGAGGTGCTCCACCAGACCTCTGTGGTAGGCCAGGTTACCAGCAGTCTCCGCCTGCACATTGGCCCTTTAGCCAGTAAGCAGGTAATTTCCCTCTTCCTGGCCAGCCCTACACACGGGCGTGTA---ATGTGGTACTGGAGAGGGGGCAGCCTCAGATGCAGCTCACCTTGTGCCTCTTTGGTTGACAGATGCCTTACGAAGTTGCCAGCAGGATTTTGGATGAAAACACATAGTGAGTATCCCTTAGTCTCCTCTCTTCC------------TATCCT-- s canFam1.chr9 41063842 327 - 53642819 CCTTGTCTTCCTCCTCAGAATATCTTAAACATCTCCAATAGCAACTACTACCCCATCACTGTGACTCAGCTGACCATCGAGGTTCTACACCTGTCCCTTGTGGTAGGGCAGGTCTCCAACAGCCTCCTTCTCCACATCAGCCCTTTGGCTAGTGAACAGGTGATT-----------------CCCTTTCCATGTGCTTGAACATGGGTGGTGGTCG-GAAGGGGCGGCTGGGGCTGAGGCTCACCCTGTGCTCATTTGGTTGACAGATATTTTATGCAGTGACCAACAAGATCAAGGATGAAAATACATAGTAAGTATACCTTGATCTCTTCTCTCT-------------TAGCCTCT a score=5342.0 s hg17.chr17_random 25274 22 + 2618010 TGCCTGGCTTAGGGACCCAATT-- s panTro1.chr19 41783176 22 + 82489036 TGCCTGGCTTAGGAACCCAATT-- s rn3.chr10 90622718 22 + 110733352 TTCTTGGTTTAAAAACCCAGTT-- s canFam1.chr9 41064169 23 - 53642819 TTCCT-GTTTGGAAACCCAGTCTT a score=165.0 s hg17.chr17_random 25296 5 + 2618010 AATAC-- s panTro1.chr19 41783198 5 + 82489036 AATAC-- s mm5.chr11 101260636 5 + 121648857 AGTAT-- s rn3.chr10 90622740 5 + 110733352 AATAT-- s canFam1.chr9 41064192 5 - 53642819 --CATCC a score=16693.0 s hg17.chr17_random 25301 56 + 2618010 CCAC----------CAGCTTTCCTGATTGCTTAGCAAATTCTTCAGCCAGCATCTGGCCTGCCCTC s panTro1.chr19 41783203 56 + 82489036 CCAC----------CAGCTTTCCTGATTGCTTAGCAAATTCTTCAGCCAGCATCTGGCCTGCCCTC s mm5.chr11 101260641 64 + 121648857 CCACTTTCTGATTACCGGTTTCCTGGTTGCTT--CAGACTCAGGGACCCGCCTCAGGCCTGCCCTC s canFam1.chr9 41064197 56 - 53642819 CTAC----------TAGACTTCCTGACTGCTTAACAAACCCTGCAGCCAGCATTTGGCCTCCACTC a score=207325.0 s hg17.chr17_random 25357 618 + 2618010 CCATGGCCGAGAATGTAATAAGCAAGGG-TTCAGGGTC--CCCAGCCTCTGCTTGTTTGGACCTTGATTAGAATGAAAAACAGGCTGGAATTTGGTTAATCTTTACAATATGTGACCTTGGGCTCTTCAGCCTGCATTGCTGAGGAAGAAGAATGTTTTGTCTGTCTCCTGAATGGGGGT--CCAGCATGTGCCTGGGCCAAGTGAGTGGAGGTCAGAGTGAT---AGTGCAGCCATGCTGCTACACTCACCTGAAG---GGTGGGAAGGGGTGGGAGTGACATTTTGGGGGCACCTG-ATGGAAGGAAAGAGTTC-TGTGGGGT--AAGGAAACTGGGACCTGCAGG------CATCTTCTGAG----CTGA---CAGGCTGCTCCATGTGACACGTGGTCCCACGT-------------------------------------TCTCTTTTCTTCTCTCTCAGCAAAATCTGTACCTGGCTGGAAATCAAAGTCCACCATGTGCTTTTGCACATCCAGTAAGTAGAGCTTGGAGCTCTGGTATCCCTGCTCTCACTTCTGACTTCATTCTC-ACTCAGCTACACCTCAT-GGGCAGAGA----GTCTTCCAAGCTGACCCCATGA--------ATCTTTGTTGGCTCTTGGGAATAGCAAGT-CTAGCCCCTTTTCTGAGTCTCACCTTGCCTATA s panTro1.chr19 41783259 622 + 82489036 CCATGGCCGAGAATGTAATAAGCAAGGG-TTCAGGGTC--CCCAGCCTCTGCTTGTTTGGACCTTGATTAGAATGAAAAACAGGCTGGAATTTGGTTAATCTTTACAATATGTGACCTTGGGCTCTTCAGCCTGCATTGCTGAGGAAGAAGAATGTTTTGTCTGTCTCCTGAATGGGGGT--CCAGCATGTGCCTGGGCCAAGTGAGTGGAGGTCAGAGTGAT---AGTGCAGCCATGCTGCTACACTCACCTGAAG--AGGTGGGAAGGGGTGGGAGTGACATTTTGGGGGCACCTGAATGGAAGGAAAGAGTTC-TGTGGGGTGAAAGGAAACTGGGACCTGCAGG------CATCTTCTGAG----CTGA---CAGGCTACTCCATGTGACACGTGGTCCCACGT-------------------------------------TCTCTTTTCTTCTCTCTCAGCAAAATCTGTACCTGGCTGGAAATCAAAGTCCACCATGTGCTTTTGCACATCCAGTAAGTAGAGCTTGGAGCTCTGGTATCCCTGCTCTCACTTCTGACTTCATTCTC-ACTCAGCTACACCTCGT-GGGCAGAGA----GTCTTCCAAGCTGACCCCATGA--------ATCTTTGTTGGCTCTTGGGAATAGCAAGT-CTAGCCCCTTTTCTGAGTCTCACCTTGCCTATA s mm5.chr11 101260705 557 + 121648857 TTGTGGCTAGGACTGCAATATGCAAGGG--TAAAAGTC--CACATTCTCTTCCTG-TTGGGCCTAGATTAGAATG----ACAGGGTGCAATTTTGTTAATCTT-----TATGTGA-ATCGGACTCTT-----TGAATCCCTGTGGAAGAAAAATACCTAGTTT-TCTGCCAAGAAGAGGT---CAGGGTGTGCTTGGGCCAATAACGTGGATG-------------------GCCAGGTGACCAGGCTCATCCTA-----GAGAATAAGAGTTAGGAGTGACATCTTAGAGGCTTCCG-ATGGGAGGCAAGAAAAC-TGTGCCTT-----------GTGACTTGTAAG------TCTCCTTGGAGTTTCCTGA---CCACCTGCTCACTGTAAAACAAAGTTCAATGT-------------------------------------TCTC------TCTCTCTCAGCAAAATCTGTACATGGCCGAAAATCAGAGTCCACCATATTCTTTTGAATATCCAGTAAGTATGGCGTGGAACTCCTGTGTCCCCACTCCC-------ACTTCAGTCTCGACTTAGCCATATTACACAGGGTAAAGA-----------AAGAGCACCCGGTAACTGATATCGTCTTTGTTAGCTCCAGAGATTAGGG----------CCTGTTCCAGATCTTATCTTACACAGG s rn3.chr10 90623456 615 + 110733352 TTGTGGCTAGGACTGCAATGTGCAAGGG--TAAAAGTCCACACAGCCTTTTCCTG-TTGGACGTGGATTAGA-------ATAGGGTGGACTTTTGTTAATCTT-----TATGGGA-GTTGGACTCTT-----TGAATCTCTGTAGAAGAATAATATCTAGTTT-TCTGCCAAGGGAGAGG--TCAGCATGTGCCTGGGCCAGGAACATGGATG---------------------------GCCAGGCTCATCCTA-----GAGTCTAAGGGCTAAGGGTGACATCTGAGAGGCTCCTG-GTGGGAGGCAAGAAAATGTGTGCATT-----------GTAACTTGTAAGTCAGTCCCCTCTTTGAGTTTCCTGACCCCCATCTGCTCACTGTAAAACAAAGCTCAGTGTCTCATCTCTTCTGTCTGTCTGCCTGTCTCTCTTTCTGTCTCTCTCTCTCTCTCTCAGCAAAATCTGTACATGGCCGAAAATCAGAGTCCACCATATCCTTGTGAATATCCAGTAAGTATGCTGTGGAATTCCTATGTCCCCACTCCC-------ACTTCAGTCTCGCCTTAGCTGTATTTCACCAAGTAGAGAAAGAGCCCTGGTAGCTGATATCATGA--------GTCTGTGTTAGCTCCGGAGATTAGCAAGTCCTAGGGCCTGTTCCGGATCTTACTTATCTTATA s canFam1.chr9 41064253 586 - 53642819 TTGTGGCCAAGACTGCAATGTGCAAGGAATTCAGGGTC--------CTCCACCTGTTTGGACTTAGGTTGGAATGAAA-ACAGGCCAGAATTTGGTTAATTCTTACAATATGTGACCTCAGGCTCTTAAGCCTGAATCCCTG-AGAAAATGAATGTCTTGTTT-TCTGTTGAGGGGGAGGGGCTAGTACACACCTGGGTCAAGCCTGTGGGGCTTGGAGAAATGCAATTGCAGCAAGGGTGACATGCTCACCTTAGGCAGAGGGAGAAAGAGTGGGAGTGGCATTT--GGGGGCCCTG-ATGGGA---AAGAGCCC-AGGAGACG------ACACTGGGGCCTGCAAG----------------G----CTGC---CAGGCTGCTCAGTGTGAAACGCGGTCCCGTGT-------------------------------------TCTT------TCTCTCTCAGCAAAATCTGTTCCTGGATGAAAATCAAAGTCCACCATGTGCTTTTGCACATCCAGTAAGTAGGGCTTCGAGCCCAGGGGTCCACTCTCCCACTTCTCATCCCAGTCTC-CC----CTCTACCTTGT-GGGAGGAGT-----CATTCAAAGCTAACTCCATTG--------ATCTTTG-TGGCTCTTGGGAGTAGCAGGT-CCAGC-CCTGCACTAGATCCCACCTTGCTTATA a score=-895.0 s hg17.chr17_random 25975 26 + 2618010 AGTTA-TTAGGGGCAACAGGCATAGGG s panTro1.chr19 41783881 26 + 82489036 AGTTA-TTAGGGGCAACAGGCATAGGG s mm5.chr11 101261262 15 + 121648857 TCTTGCTTAGGCGCC------------ s canFam1.chr9 41064839 10 - 53642819 -----------------AGTCATAGAG a score=220446.0 s hg17.chr17_random 26001 453 + 2618010 CTGTCTGGAAGCTGCTGGAAAACAGGTGGGGCAGCTGTCCCAGGTACCTTGGCAGAGTGGGGAGCCAGAGGGAAGGGCAAATGAGGGAGCTCCC-------CGCTCCCCACCCCCAGACAGTATAATGGGGCCAGAGCTTTCCTTTTCCTCCCAGCCATGGCAACAAGGCCTGCTTCCTCTCCAGGGGCACCCTGACCTGTTCATACCTGAGCCATTCAGAGCAGCTGGTCTTTCAGAGCTATGAATATGTGGACTGCCGAGGAAACGCATCTGTGCCCCAC---CAGCTGACCCCTCACCCACCATGACCTGTCTGCTGTCCCTGTACTCCAGGCACCTGCAACCCTGGTCTATATCTCCCACAACTCCCTGGTGACTAAGGAAGG---------ACTACAGAGGCTTTGCCAAAGGAGAAGCCCTGCCTCATCACAC----CCTTACCTCCCACCCCCTCAGCACAGGAAGCTT- s panTro1.chr19 41783907 453 + 82489036 CTGTCTGGAAGCTGCTGGAAAACAGGTGGGGCAGCTGTCCCAGGTACCTTGGCAGAGTGGGGAGCCAGAGGGAAGGGCAAATGAGGGAGCTCCC-------CGCTCCCCACCCCCAGACAGTATAATGGGGCCAGAGCTTTCCTTTTCCTCCCAGCCATGGCAACAAGGCCTGCTTCCTCTCCAGGGGCACCCTGACCTGTTCATACCTGAGCCATTCAGAGCAGCTGGTCTTTCAGAGCTATGAATATGTGGACTGCCGAGGAAACGCATCTGTGCCCCAC---CAGCTGACCCCTCACCCACCATGACCTGTCTGCTGTACCTGTACTCCAGGCACCTGCAACCCTGGTCTATATCTCCCACAACTCCCTGGTGACTAAGGAAGG---------ACTACAGAGGCTTTGCCAAAGGAGAAGCCCTGCTTCATCACAC----CCTTACCTCCCACCCCCTCAGCACAGGAAGCTT- s mm5.chr11 101261277 448 + 121648857 CTGCCTGG-AGCTTCGGGAACACAGGTGGGGCAGCTGCCTCA-GTATCTTGGCAGAGCAGGTAGCCGAAGGAAGTGG-----GAGGGAGGTCCTTAGGGAGCCAGCCTCACACACACACAGTAGAGCCAGGCCAAAGCTGTCCTTCCCCTCTCTGATTTTACCACAAGCCCTGCTTCCTCTCCAGGGGTTCTCTGACCTGCTCCTTCCTAAGCCATCCGCAACAGCTGCCCTTCGAGAGCTTTGAATATGTAGACTGCAGAGAAAACATGTCCCTGCCCCAC---CTGGAGCTGCCCCGCCCAGCCTGATCTGTCTGCCGCCCCTGGACTCCAGGCACCTGCAA-GCTGATCTGCAGCT----CAGCTCCGTGGAGCTCAAGGAAAG---------ACTGTAGGGACTTTGTTGAAGGAAAAGTCCTGCTTTGGGCCCT----GCCTTCCCCTAACACCCTCAGCACACAGAGCTT- s rn3.chr10 90624090 440 + 110733352 CTGTCTGG-AGCTTCCAGAACACAGGTGAGGCAGCTGCCTCA-GTGTCCTGGCAGAGCAGGGAGCAGAAGGAAGTGG-----GAGGAAGATCTT-AGGAAACCAGCCTCACACAC--TCTGTAGAACCAGGCCAAAGCTATGCTTTCCCTC-CAGACTTTACAACAAGCCCTACTTCCCCTCCAGGGGTGCTCTGACCTGCTCCTACCTGACCCATCCACAACAGCTACCCTTCGAGAGCTTCGAATATGTGGACTGCAGAGAAAACATGTCAATGCCCCAT---CTGGAGCTCCCTCGCCCAGCCTGATCTGTCTGCTGCCCTTCTACACCAGGCACCTGCAA-GCGGGTCTGCAGCT----CCGCTCCATGGAGCTCTAGGAAAG-------------TAGTGACTGTGTTGAAGGAAACGTCCTGCTTTTGTCTGT----GCCTTCCCCTAACACCCTCAGCGCATGGAGCTC- s canFam1.chr9 41064849 449 - 53642819 CTGTCTTG----------ATCACAGGTGGGACAGCTGTCCCAGGCACCTTGGTAGAGTAGGGAGTGGAAGGAAGAGC-----GTGGAGTGTTTG-AGGGAGCCCACCC--TCCCCAGACAGCAGAGCAGGGCCAGAGCTTCCCTCTTCCTCCCAGACAGAGCAACAAAGCCTGTTTCCTCTCCAGGGGCACCCTGACCTGTTCCTACCTGAGCCATTCAGAGCAGCTAGTCTTCCAGAGTTATGAATATGTGGACTGCCGGGGGAACTCATCGGTGCCCCACTTGCTGCTGGCCCCTCACCCACCATGACCTGTCTACTGTTCCCAAACTCCAGGCCCCTGCCAGCCTGGACTGTATAT----------CCCAGTGCCCAAGGAAGAATTACACAAATTACAGTGACTTTGCCAAAGGAAAAGCCCTGCTTTGTTTTACCTCACCCAACCACACACCCCCTCAGCACAGGGAGTCCT a score=9277.0 s hg17.chr17_random 26454 95 + 2618010 GCTTTGAAGTTAACTTCATACACACACACTCATAT-CCTCCAGTTT---CCCCCAGATTCTTTCAGGGGCTGCCATCAGATTCTGCCCTTGGTTAGTTt s panTro1.chr19 41784360 95 + 82489036 GCTTTGAAGTTAACTTCATACACACACACTCATAT-CCTCCAGTTT---CCCCCAGATTCTTTCAGGGGCTGCCATCAGATTCTGCCCTTGGTTAGttt s mm5.chr11 101261725 86 + 121648857 -CTGTAACAATGTCATAGTCCCTGAGTCCTCAGAC-CTCCCCACTC---CCCCACGAGTC--------GCTTCTGATGGATCTTACCCATGGTCTGTGT s canFam1.chr9 41065298 99 - 53642819 ACGTGGAAGTTAACTTGACACACACATGCACGCACACATGCTATTCACATCCTCTGATTTCCACAGGAAAAGAAGTCTGGTTTTCCTAGCAGCCAGCAC a score=11004.0 s hg17.chr17_random 26549 130 + 2618010 tttg--------------ttttttttttggtagagacagagtctcactgttggtccaggttggttttgaactcctgggctcaagcgatcctcccttcttggcctcccaaagcacttggattacagatgtgagc--ctgtgcctggc s panTro1.chr19 41784455 146 + 82489036 tttgttttttttttttttttttttttttggtagagacagagtctcactgttggtccaggttggtcttgaactcctgggctcaagcgatcctcccttcttggcctcccaaagcacttggattacagatgtgagccactgtgcctggc a score=1076.0 s hg17.chr17_random 26679 7 + 2618010 TGGTCTT s panTro1.chr19 41784601 7 + 82489036 TGGTCTT s canFam1.chr9 41065397 7 - 53642819 CAGGCTT a score=220.0 s hg17.chr17_random 26686 2 + 2618010 TC s panTro1.chr19 41784608 2 + 82489036 TC s rn3.chr10 90624628 2 + 110733352 TG s canFam1.chr9 41065404 2 - 53642819 TT a score=0.0 s hg17.chr17_random 26688 4 + 2618010 TTGA a score=136.0 s hg17.chr17_random 26688 2 + 2618010 TT s panTro1.chr19 41784610 2 + 82489036 TT s rn3.chr10 90624630 2 + 110733352 TG a score=1146.0 s hg17.chr17_random 26690 2 + 2618010 GA s panTro1.chr19 41784612 2 + 82489036 GA s mm5.chr11 101261814 2 + 121648857 GA s rn3.chr10 90624632 2 + 110733352 GA a score=46548.0 s hg17.chr17_random 26692 179 + 2618010 GGAAAATCTGACCTGGCAT-TTTCTTGAGGCACCTTAGATTCCCTGGAGTGGCACCTGGCCTTTCTGTACTGAGCAC-CTGGTCAGTCTGAAGGGGGCATTTCACCCCAGCTCCATCAGGGCTGGCTGTCC---------CGTCTGAATGTGGAGAGAGCTGTAGTTTTATCTGGCTTTTAAAACATGGA s panTro1.chr19 41784614 179 + 82489036 GGAAAATCTGACCTGGCAT-TTTCTTGAGGCACCTTAGATTCCCTGGAGTGGCACCTGGCTTTTCTGTACTGAGCAC-CTGGTCAGTCTGAAGGGGGCATTTCACCCCAGCTCCATCAGGGCTGGCTGTCC---------CGTCTGAATGTGGAGAGAGCTGTAGTTTTATCTGGCTTTTAAAACATGGA s mm5.chr11 101261816 120 + 121648857 GGAACGGCTACCTTGGCGT-TGTCTTGGG---------------------------------------ACTGAGCATGTTGGTTA--------------------CCCAGCTCCGCCAGGG-TGGGTCTTC---------AATCGCAACGAAGAGAAAGCTGTAGTTTTATCTAGACTTTGCAGCATGGA s rn3.chr10 90624634 108 + 110733352 AGAATGGCTAACTTGACAT-TGTCTTGGG---------------------------------------ACTGAGCATGTTGGTTA--------------------CCCAGCTCCACCCGGG-TGGGTCTTC---------AGTTGGAA------------TGTAGTTCTAGCTACACTTCACAACATGGA s canFam1.chr9 41065406 169 - 53642819 GGAAAGTCTGACCTGATATGTATCCAGAGCTGCCTTAGATTTCCCAGAGTGGTCCCTGCCCTCTGTGTACTGAGCACTTTAGTTG--------------------CCTAGTGCCTCCGGGGCTGGCCTTCCTGCCCTTCTTGCCTGAA-GGGGAGAAATCTTTAATTTTATCTCACTTTTAAAACATGGA a score=611.0 s hg17.chr17_random 26871 3 + 2618010 CCT s panTro1.chr19 41784793 3 + 82489036 CCT s canFam1.chr9 41065575 3 - 53642819 TCT a score=26907.0 s hg17.chr17_random 26874 292 + 2618010 GCCggctgggcgcagtggcttacacctgtaatcccagtactttgggaggccgaagtgggtggatcacttgagggcaggagttcgtgaccagcctggtcaacatggtg-aaaccttgtctctactaaaaatacaaaaattagctgggtgtggtggcatgcgcctgtaatcccagctactcgggaggctgaggcagcagaatcacttgaaaccggaaggcagaggttgcagtgagccaagatcgtgcaactgcactccagcctgggcaaaagagcaaaactttgtctcaaaaa---aa s panTro1.chr19 41784796 296 + 82489036 GCCggctgggcgcagtggcttacacctgtaatcccagtactttgggaggccgaagtgggtggatcacttgagggcaggagttcgtgaccagcctggtcaacatggtgaaaaccttgtctctactaaaaatacaaaaattagccgggtgtggtggcatgcgcctgtaatcccagctactcgggaggctgaggcagcagaatcacttgaaaccggaaggcagaggttgcagtgagccaagatcgtgcaactgcactccagcctgggcaaaagagcaaaactttgtctcaaaaaaagaa a score=954.0 s hg17.chr17_random 27166 5 + 2618010 GACTC s panTro1.chr19 41785092 5 + 82489036 GACTC s mm5.chr11 101261938 5 + 121648857 AATCT s rn3.chr10 90624744 5 + 110733352 GATCT a score=183181.0 s hg17.chr17_random 27171 654 + 2618010 TTTTCAAGTTTTCTACCCTCTGATAAGAAAATTTGGGGATATCCAGTGCCATCTCCAAGGACT-TTCAGGGGATCATAGATGCTTTTCTGTGCCTATCTGCTTTGACCATGTGAAAA------AGTGATAGTCTGCTTCTCTC-TGGTAACTTGTCTGCCACCCATCTGATAGTAAGATTAGCCAAGGCCCTTTAGCCCTCTGTCCTTTCTGGTT----ATTGACTGTCCCTGGTTCCTAGGAAGACAGAGTTGTTCTCCAGCTAAAGCGTCTCCTCTCTATAAAGTAGTTTTACTATTCTTTTCATAGCAGGAGCCAAAATAGTAGAGGAGGGGAGAGAGGCACCT--------------GGCACTCTGCGGGCCTGCACAGGAAAAACAGAGCCAAAGACAGAATCATTGTATAAGATATTTATTAAAGGAGAGCCTC----------TAAGTCCA-CA-TCCTGAGCCCATGTGAGTGGACACAGGTAGGTAAAACGGT-----GGGTCCAGCTGCTGTCATCTGAAAGCCTTCAGGAGATGAAGCTATCAGTATCCAGCTGAAGGCTGCTGGGTTCTGTTCCACCACCACCTTAGCACCAGGGCC-CTCTCTGGTCCCAGAGGCCTCATCTCTCCT-TGGGCTTTGACAATGTGGAGCAGCACATCAGCAGGGACTGGTCTAGACCCTCCCTTTC s panTro1.chr19 41785097 654 + 82489036 TTTTCAAGTTTTCTACCCTCTGATAAGAAAATTTGGGGATATCCAGTGCCATCTCCAAGGACT-TTCAGGGGATCATAGATGCTTTTCTGTGCATATCTGCTTTGACCATGTGAAAA------AGTGATAGTCTGCTTCTCTC-TGGTAACTTGTCTGCCACCCATCTGATAGTAAGATTAGCCAAGGCCCTTTAGCCCTCTGTCCTTTCTGGTT----ATTGACTGTCCCTGGTTCCTAGGAAGACAGAGTTGTTCTCCAGCTAAAGCGTCTCCTCTCTATAAAGTAGTTTTACTATTCTTTTCATAGCAGGAGCCAAAATAGTAGAGGAGGGGAGAGAGGCACCT--------------GGCACTCTGCGGGCCTGCACAGGAAAAACAGAGCCAAAGACAGAATCATTGTATAAGATATTTATTAAAGGAGAGCCTC----------TAAGTCCA-CA-TCCTGAGCCCATGTGGGTGGACACAGGTAGGTAAAACAGT-----GGGCCCAGCTGCTGTCATCTGAAAGCTTTCAGGAGATGAAGCCATCAGTATCCAGCTGAAGGCTGCTGGGTTCTGTTCCACCACCACCTTAGCACCAGGGCC-CTCTCTGGTCCCAGAGGCCTCATCTCTCCT-TGGGCTTTGACAATGTGGAGCAGCACATCAGCAGGGACGGGTCTAGACCCTCCCTTTC s mm5.chr11 101261943 571 + 121648857 TTTTCAAGCTCTCCTCCCAGTAATAAGTGGCTTTGGGGATATCCAGTGCTGTTTCCAAGGTCTCCTTGGGTGACTATAAATGTTCTCCTGTACTGTCTTGCTTTGATCATGTGATAA--TGAGGGTAATAGACTACTTCTCTC--AGTAAATGGTA------------GACAATAAGGT-------------------CCTCATCCTCCCAGGTTCGGAAT--ACTATCCCTGGCTTCCAGGAAGGGAGATTTA--CACCATCTAAA----CTCTTCTCTATAGACTGGCTCCAATGCTATCTTCACAGCAGAAACCAA------GGAGCTGAGGAGAAA--------------------------CCATCGGGTGTACCCTAGAG---------CAAAGGCAGAGCCAGTTGCAAAGATATTTATTAAAGGAAAGTTTC----------TAAGCCCACCA-TCCAGAGCCCATGTGAGTGCACACAGGTAAGACAGGCAGTAGAGCAGGCCCAGGGGCAGTGTTCAGAAAGCATGAAGGACAT-AAGCTGTTGATA-CCAGGCCAAAGCTGTGGGGCTCTCATGGAT-----TCTCTGCATCAGGCCCACCCTCTG----------------CTGTCCTCTGGGATGTGAC--TGAAGAGTGACAGATTCACCAGAATT--------TCCTTCCTTGC s rn3.chr10 90624749 567 + 110733352 TTTTCAAGTTTTCCTCTCAGTAATAAGTGGCTTTCCGGACATCCAGTGCTGTGTCCGCGGTCGTCTTAGGTGACTATAAATGTTCTCCTGTGCTGTTCTGCTTTGGCCATTTGATAA--TGATGGTGATGGCCTGGTTCTCTC--AGTGAAAGGTG------------GACAGTATGGT-------------------CCTCATCCTTCCTGGTTCAGGAC--ACTGTCCCTGGTTTCTAGGAAGGCAGA-TTA--CAGCATCTAAA------CCTCTCTGTAGAACAGCTCTAATGCTGTCTTCACAGCAGAAGCCAA------GTAGCTGAGGGGGAG--------------------------CCATCTGGTCTACCTTAGAG---------CAAAGGCAGAGCCATTTGAGGTAGTCTTTATTAAAGGAAAATGTC----------TAAGCCTG---------------TGTGAGTGGACACAG----GACAGGCAGTTGAGTAGGCCCAGGGGCTCTGTTCAGAAAGCCTGAAGGACAT-AAGCTATTGATA-TCAGGCCAACGCTGTGGGGCTCTCGTATAT-----TCTCTGCACCAGGCCCACTC---GGTTCCCGAGGCCTCTGCCGTCCTCTGGGATGTGACTGTGAAGAGTGACAGATTCACCAGATTTTT------TCCTTCCTTGC s canFam1.chr9 41065578 634 - 53642819 TTTTCAAGTTCTCCACCCAGGGATGGGAA---------------AGTGA---------------CTTGAGGGA-CATCCATGCTGCCTCGTGCCTTCCTGCTTTTGTCATGTGACAAAGTGATGGTGATGATCTGCTTTTGTCCTGGTAACTTGTG--------CCCTGACAGCAAGAT-TGGCAAAGCCCTTTGGCTCTGCATCTTCCCTGGTC----AAAGACTGTTCC-AGTTTCTAGGAAGACAGAGCTGTTCTCTGGCTAAAG-----CTTCTCTCCAACAAAGTTCTTTTATTCTGGTCACAGCAGAAGCAGAAGTAGTAAGGGAGGAGAGGAG-ACACCTCTCCTATACAGGGAGGCACCCTCC--ACCTATACAGGAAAAACTGAGATGAAGCCAGAGTCATTTGGAAAGAAGTTTATTGAAGTTAGGTTTCTGGCTGGTGGTGAGCTCC-CACCCCTGAGCCCATGTGAGTGGACACTGGTAGGTCAAACGGT-----GGTGCCAGCTGCT-CCTCCAGATAGCCTGCAGAGGGG-GAACTGTCAGGA-CTTGGCCAA-GCTGCTGGGCTCTACAGCATCCCTGGCTTAGTTCCAGGGC--CCATCTTCTCCCAGAGGCGTCTGCTTTCCTTCGGGTGTTGACAGGATGAAACTGCACTTGAGTAGGGACTGGTCTCAACCTCTCCTCTC a score=17283.0 s hg17.chr17_random 27825 118 + 2618010 CTGTCACTTAGCTGGAGCTAAGCTCCAGATAACCCCTAGGTTCCCACTGG-CTCCTAGTAGAAATAGTTTCTGTACTTTAGCAGAACAGGAAGGATATTTGTTCATTAAAGGTGGCTTG- s mm5.chr11 101262514 116 + 121648857 CTGTCACTACACTGACGCCAAACCACAGGTAACCCCCAGTTTTCTACTGGACTCCAGGTGGAGATATGATGTCTGTTGCCGGAGAGCAGAA---ATGTGTGTTCTCTAAAGCTAGCTAG- s rn3.chr10 90625316 113 + 110733352 CCGTCACTACACTGGAGCCAAGCCACAGGTAACTCCCAGTTTTTTACTGAACCCCAGGTAGAGATG---TCTGTGTTGTGGGAGAGCAGAA---ACATGTGTTCTCTGAAGCCATCCTT- s canFam1.chr9 41066214 103 - 53642819 CTGTCACTCAGATGAAGCAAAGTCCCAGATGATG--GAGGGTCCCACTGGGCTCCAGATGGAGGCGG--TTGGTTGTATTGCTGAGCAGGA---A----------CTGAAGGTGGCTGTG a score=-61.0 s hg17.chr17_random 27943 7 + 2618010 GTCTTAC s rn3.chr10 90625429 7 + 110733352 TGCTGGC s canFam1.chr9 41066317 7 - 53642819 GTTTTCC a score=-31.0 s hg17.chr17_random 27950 1 + 2618010 a s rn3.chr10 90625436 1 + 110733352 G a score=11599.0 s hg17.chr17_random 28129 131 + 2618010 ctgaggcaggagaatcacttgaacctgggaggcagaggttgcagtgagccaagatcgcaccactgcactccagcctgggcaacaagggcgagactctgtctcaaaaaaaaaaaaaaaaaaa------GATGGCTGTC s panTro1.chr19 41799349 137 + 82489036 ctgaggcaggagaaacacttgaacccgggaggcagaggttgcagtgagccaagatcgcaccactgcactccagcctgggcaacaagggcgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaGATGGCTGTC a score=1398.0 s hg17.chr17_random 28260 10 + 2618010 TCTTTATCAT s panTro1.chr19 41799486 10 + 82489036 TCTTTATCAT s mm5.chr11 101262630 10 + 121648857 CCTCTGCCCT a score=3092.0 s hg17.chr17_random 28270 16 + 2618010 TCAGACAG----AACGATGA s panTro1.chr19 41799496 16 + 82489036 TCAGACAG----AACGATGA s mm5.chr11 101262640 20 + 121648857 CCAGACAGGTGCAAAGGCGA s canFam1.chr9 41066324 16 - 53642819 TTGGGCTG----GGAGATGA a score=62896.0 s hg17.chr17_random 28286 247 + 2618010 ACACAGGTGAG--CAGGGAAAGCTAATTTTGAAGTAGGATGCATGGAGAGGGAGAAGTGGTGACAGAACTTGGTAACTAGCTGGCTGGGGGAACGAGGGGAAGGAAGGAGACTGCTGTC----------T---CCAAGCT-----------------GAGGTCAGGGTGGTGTTGGCAAGAGCGCAAAAG-TCCAGGGAAGCCAGGCTGGAG---CTGCTGTGTATAGACTGCCAAATGTGAAGTATTTATATTGTATTC----------------------------------AATAAACTATACTTAAGAG-----TGTT s panTro1.chr19 41799512 247 + 82489036 ACACAGGTGAG--CAGGGAAAGCTAATTTTGAAGTAGGATGCATGGAGAGGGAGAAGTGGTGACAGAACTTGGTAACTAGCTGGCTGGGGGAACGAGGGGAAGGAAGGAGACTGCTGTC----------T---CCAAGCT-----------------GAGGTCAGGGTGGTGTTGGCAAGAGCACAAAAG-TCCAGGGAAGCCAGGCTGGAG---CTGCTGTGTATAGACTGCCAAATGTGAAGTATTTATATTGTATTC----------------------------------AATAAACTATACTTAAGAG-----TGTT s mm5.chr11 101262660 252 + 121648857 AGGGCGGTGTGGTTGGGGAAAATTGAATTTGAAGTGAGAAGAATGCA-AGGAAATGGTGGTAACTGAGCTGGGTAACTAGC---CTGGGGCTACACAGAGGGAGAGGAAGTCT--TGTC----------TGCACCAAGTTTTCCCTCCTGG------GTAGCCAGGGCTAAGGTGTACAAACCAAAGGAGACCCAGGGAAGTCAAGCTGAGA---TTAGAGTGTATAAACCATCAAATGTAAAAGATTTCTA------AC----------------------------------AATAAATTGTTCTTTAGCC-----GAAG s rn3.chr10 90625444 231 + 110733352 ACGTGGTTGGG--GAAGTAAGGCTGAATTTGAAGTAAGG---ATGCA-AGGAAACGATGGTGCCAGTACTGTCCAACTAGC---CTGGGGATACAAGGAGGGAGAGGAAGTCTGTTGTC----------A---CCGAGCTTTCCCTCCTGG------GTAGCCAGGGTTAAGATGT----ACCAACAAAA----------------CTGAGA---TCGAAGTGTATAAACCAACAAATGTAAAAGATTTCTA------AC----------------------------------AATAAATTGTTATTTAGCCATGCTGAAG s canFam1.chr9 41066340 306 - 53642819 ACTTAGGTG-G--TGGGGAAAGCTGAGTGCCATTTTGGATGGATGGAGAGGAGGCAGTGGTGACAGCACCTGG---CTAGCTGGCTGAGCAGACAGGAAGAAGGAGGAAGGAGGCTGTCCCGTCCTGTGT---CCCCGCTTTCATGCCGGAGTGAGTAGAGTCAAGAAGGTGCTGGCAGGAGCACC-AAG-TCCAAAAAGGCCAGGCTGGAGTTTCTGCTGTGTGTAGGTTGCCAAATGTAAAGGATATCTATTGTATTCAATAAACTATACtttaaaaaaataaaaataaaaaaataaaCTATACTTAACAA-----TGTT a score=11548.0 s hg17.chr17_random 28533 36 + 2618010 CAAAAAAGTC--TCCTGGGAGTGGGAA----GGGAGCTAGTG s panTro1.chr19 41799759 36 + 82489036 CAAAAAAGTC--TCCTGGGAGTGGGAA----GGGAGCTAGTG s mm5.chr11 101262912 42 + 121648857 GAAAAGGGGCATTCCTGGACAGAAAAACAAGGGGTGCTGGTG s rn3.chr10 90625675 42 + 110733352 GGAAAGAGCTATTCCTGGACAGAGAAGTGAGGGGTGCTGGTG s canFam1.chr9 41066943 36 - 53642819 aaaaaatGTC--TCCTGTGAGTGGGAG----GAGAGCTGGAA a score=504.0 s hg17.chr17_random 28569 2 + 2618010 GA s panTro1.chr19 41799795 2 + 82489036 GA s mm5.chr11 101262954 2 + 121648857 TA s canFam1.chr9 41066979 2 - 53642819 GA a score=251.0 s hg17.chr17_random 28569 4 + 2618010 GATA s canFam1.chr9 41066979 4 - 53642819 GACA a score=302.0 s hg17.chr17_random 28571 2 + 2618010 TA s panTro1.chr19 41799797 2 + 82489036 TA s canFam1.chr9 41066981 2 - 53642819 CA a score=1518.0 s hg17.chr17_random 28573 5 + 2618010 CTCCC s panTro1.chr19 41799799 5 + 82489036 CTCCC s rn3.chr10 90625717 5 + 110733352 TTTCA s canFam1.chr9 41066983 5 - 53642819 CTCCC a score=2038.0 s hg17.chr17_random 28578 13 + 2618010 TATTTCACAAACt s panTro1.chr19 41799804 13 + 82489036 TATTTCACAAACt s rn3.chr10 90625722 13 + 110733352 CATCCCACCAAGT a score=28153.0 s hg17.chr17_random 28591 301 + 2618010 tttcttttttttttttttt-gagacagtttcgctctgttacccaggctagagtgcaatggcatgatcttggcacagtgcaacctctgcctcctgtgttcaagtgattctcgtgcctcagactccctgagtagttggggttacagacatgcaccaccacaccaaattaatttttgtatttttagtagagacagtgttttatcatgttagccaggctggtctcaaactcctggcctcaagcgatctgcccgcctcggcctcccagagtgctgggattacaggcatgagccactgcacctggcAG s panTro1.chr19 41799817 302 + 82489036 tttcttttttttttttttttgagacagtttcgctctgttacccaggctagagtgcaatggcatgatcttggcacagtgcaacctctgcctcctgtgttcaagtgattctcgtgcctcagactccctgagtagttggggttacagacacgcaccaccacaccaaattaatttttgtatttttagtagagacagtgttttatcatgttagccaggctggtctcaaactcctggcctcaagcgatctgcccgcctcggcctcccagagtgctgggattacaggcatgagccactgcacctggcAG a score=4116.0 s hg17.chr17_random 28892 42 + 2618010 AAACTGTTTCCTTAATGTTCTAACGGGCAGCAAGGTTTCTTC s panTro1.chr19 41800119 42 + 82489036 AAACTGTTTCCTTAATGTTCCAACGGGCAGCAAGGTTTCTTC s canFam1.chr9 41066988 39 - 53642819 AGCCTGTTT-CTGAGCTTCCGAGTGAGTGCCAAGCTCTTT-- a score=2601.0 s hg17.chr17_random 28934 9 + 2618010 CCCAGGCCT- s panTro1.chr19 41800161 9 + 82489036 CCCAGGCCT- s mm5.chr11 101263983 9 + 121648857 CACAGGCTT- s canFam1.chr9 41067027 10 - 53642819 CCCAGGCCCT a score=160315.0 s hg17.chr17_random 28943 754 + 2618010 CTGAGCCACTGATGACATATCCTGCCCTTCTGTTTTCCGTGAGATTGCTCACAGGACCTCACTCTCCCTCTTGCTCCCATTGTGTATCTCTAAAG-TCTCTTCCAATT--TTACTATTCCTGTT-----------------CTGTGCCACC----ACCATCCCGTTATCTTCCCCAGCTGCTCTCATCAGGAA--ATTTCGTGGGTTGCACTGAAACGGCCCCT-----TCAGACCAAAGGCAATGCTATGTAGGCTAAAATGAAAT-ACGCAGCTGATGCCTCGGACGGGGCTTGTGATTGAGGTGACTGAGGCAGCCTTTCTCAGCATGGAGGAAGAAAGGCTTT---CCCAGGGCTTGCACCTTCCTGAAGT-CTAACACCCAGGGCCCCCAGCCCTACCCACTCCTTCACCTTGGGCTGGTGAACCTCTGGGTTGTCTCTGCTAGATGGAGAGGCTGAGAGCC-AGGAAGGGAGAGGGCTGTGGGTTTTAGAAGGCAAGACTCCCTCCCCTTCCCAGGGTCAGGTGTCATGTTCCTGAGGCTATAGCCTCCGTTTCCTCCAAGCTCTTTCGCTCCATCCCTGCCTCC-ATTGTCCATTTGACAGCTGAGTGCCCACTGTAGGCCAGCCATTGCACTGGGCTTGGAGGTGGGGAGCATCACTGCCTGCCACCACTTT-----------CTGCTGCTGCAGGCCTGCTCTGATGTGATGCGACCCCTCTCCCTTCCCAGGCTATATCTCAGTAAGCATGGGCTTGGGGGAATGGGTGATGGCTCCAGTGACAGTCATAAAC s panTro1.chr19 41800170 752 + 82489036 CTGAGCCACTGCTGACATATCCTGCCCTTCTGTTTTCCGTGAGATTGCTCACAGGAGCTCACTCTCCCTCTTGCTCCCATTGTGTATCTCTAAAG-TCTCTTCCAATT--TTACTATTCCTGTT-----------------CTGTGCCACC----ACCATCCCGTTATCTTCCCCAGCTGCTCTCATCAGGAA--ATTTCGTGGGTTGCACTGAAACGGCCCCT-----TCAGACCAAAGGCAATGCTATGTAGGCTAAAATGAAAT-ACGCAGCTGATGCCTCGGACGGGGCTTGTGATTGAGGTGACTGAGGCAGCCTTTCTCAGCATGGAGGAAGAAAGGCTTT---CCCAGGGCTTGCACCTTCCTGAAGT-CTAACACCCAGGGCCCCCAGCCCTACCCACTCCTTCACCTTGGGCTGGTGAACCTCTGGGTTGTCTCTGCTAGATGGAGAGGCTGAGAGCC-AGGAAGGGAGAGGGCTGTGGGTTTTAGAAGGCAAGACTCCCTCCCCTTCCCAGGGTCAGGTGTCATGTTCCTGAGGCTATAGCCTCCCTTTCCTCCAGGCTCTTTCGCTCCATCCCTGCCTCC-ATTGTCCATTTGACAGCTGAGTGCCCACTGTAGGCCAGACATTGCAATGGGCTTGGAGGTGGGGAGCATCACTGCCTGCCACCACTTT-----------ATGCTGCTGCAGGCCTGCTCTGATGTGATGCGACCC--CTCCTTCCCCAGGCTATATCTCAGTAAGCATGGGCTTGGGGGAATGGGTGATGGCTCCAGTGACAGTCATAAAC s mm5.chr11 101263992 661 + 121648857 CCAAGCCTTTGA-ATCATGTTCTACTTCTCTGGCTTCTGAGTGATTATCCACAAG-GCTTGCTCT--------CTCCCATTTTGTATCCCTAGA-------TACATTTGATTACTATTCTAGTTCCAAGCCAGTCTCCACACTGTCCCACTGATAACCATTCAGGTATCATCCCTAGACTACCCCAACGCAAA--GCTCC----------------TGACCCT--------------GAGCTGATGCCCTGT--GTTAATGCGAAATCACCCATTGGTTCCCCCACATCA---TTGTGACTGATGTGACTAAGGGAGGCTTTCTCAGAATTGGAGCAGAAAGGCCTT---CATAGGATTTGTGTCTTCCTGGAGA-CTAATACTGAGGGTCCCCAGCCCTGCCTCCTCTTCCAGCTTGGACTGG-GAACCTCCTGGC--CCTCTGCTAAGTGAAAGGTATGACAACCTAGGAAGAAAGGAGCTTGAGAACTTTAGCAGGCAAG--CTCGTCTCCTTTCCAGGGCCACGTGTCCTGAGCCCATTGCTGCAACATC--TCTCTTCTGAATTCTCTCAGTCCCCTCCTGCCTCC-CCTGT---TTTAACAGCTCCATACCTAGTATGAGCGCAGAACTGTATAAGAC----------------------CCCCCCACCCC---------------TGATTCTTCAG--CTGCTCTAGTGTATTGCAGCCC--CTCCCTTCTCAGGCTGTATCTCAAGAAGC--------------------------------GATGCTCATTAAC s rn3.chr10 90626601 653 + 110733352 CAAGACCTTTGGAAACAAGTTGTGCTCCTCTGGCTTCTGAGAGATTATTCTAGAG-GCTTGCTTT--------CTTCCATTGTGTATTCCTAAAC-TGTTTTGGA-----ATACTATTCTGGTT----------------------CCAAA----CCTATCCCCATACTGCCCCATTCAGGTATCATC-----------CCTAGACCATGCTAACACAAGGCTC-----CCAACCCAGAGCTGATGCCCTGT--GTTAATGCAAAATGACTCA-CTGGTCCCCCA--------TTCTGACTGATGTGACCAAGAGAGGCT------------------------TTT---CCTAGGATTTGTGTCTTCCTGGAGG-CTGAGACTGAGGGTCCCCAGCCCTGCCCGCTCTTCCCGTCTGGACTGG-AAATCTCTCGGCC-CCTCTCCTAAGTGGAAAATATGACACCT-AGGAAGAAAGAGGCTTGAGGACTC-----GGTAAA--CTCTTCTCCTTTCCAAGGTCATGTGTCCTGAGTCCATTACTGCCACATCTTTCTCTTCTGGATTCTCTCAGACCCCTCCTGCATCA-CCTGT---TTTAACAGCTCAATACCTAGTATGGGCCTGGGATTATATAAGGC------------------CCTGCCCCCCACCCCCCTGAACCCCACCCCCGATTCTGCTG--CTGCCCAAGTGCGTCACAGACC--CTCCCTTCTCAGG---TATCTCAATAAGCATGGACC---------------CTGTTCTAGTGATGCTCATTAGC s canFam1.chr9 41067037 636 - 53642819 ATGCCCCTCTGCTAACCTGTCCAGCTCTTTTTGCTTCTGAGAGCTTGCTCCCAGGAGCTGGCGCTCTCCCT--TTCTCATTGTGTATCTCTGAAGCCCTCTCCTGGCT--TTAATATTCCTGGT------------------------------------------------------------CCTCAGGAAGCACTCCATACAAGGGCCC----TGGTCCCTGGCAGTTGGTGTGGGGGCAGT-CTGTGTGGGCTTTGATGAAGG-GCCCAGGCATCACCTG---------TCTAGCCCCAGGT----------------------GCAAAGGGGGGCAGGCTGTGGGCCTAGG--TATCACCTTCAGGAAGTGGTAAGGGCGGGTGCCTGGGGCCTTT---------GCAGCCTG-------ACACCTCT-------------------GAAAGGCTGAGGTGG-GGGAAGGGAGAGGCCTGTGGGTTTT-GTGGGCAAGTCCTCCTCCCCTTCCCAATATCAGGTGTCCTGTGCTTGAGGCTACAGCCCCCCTTTCCTCTGAGCTTTTT----CCACCCCTGCCTCTGATCATCCATGCCACACCTCAGAGCCCACAGTGGGCCAGGCATTACACTGGACTTGGTGGGG--------CCCTGCCTGCCACCTGTAA------------TGCTGCTCCAGGCCTGCTCCAGTATGATGCAAACC--CTCCTTCCCCA-GCTGCATCTCAGTAAGCACTGGCCTTTGGGGAGGGGTGATGGTTCCAGTCAGAGTCTTAAAC a score=148368.0 s hg17.chr17_random 29697 518 + 2618010 TGAAGCCCCCCACAGACTTATCACTGCTGAATGAGGGCAGGTAGTGATAGTAGTAGGAGTTGCATACTTGGG---------------GGGGACCCAAGACCCAGTTCTCCCATTGGCTTTGCCTAGAGAAGCATAAACTTGCC--TTCCACTCTCTTTCCACCCTCTCCATCCCCTTCGTGAGTCCTCCTGCCCTCTTCCT--CTCATCCCTGTCTCATAAAGCTGTCCGGTCCCGTGATTCTTCCCAGGAAAAAAATTACATTTT-ATTCCTGGCAGCCTCCTCTTCTAGAGTGGGT--------GGC---TTTTGGAGTGGAGATATTGCTGGATGCTGAGAAGAT-----------------------------GTGGTTGC-----------------------------------------------------------------------------------------------------------TCATCTGC-----ATTTTGGGGATGG----------------CCATGGGGTCCTGGGTTCAATCTCTGGATCACCACTGCTGTATGTAATTGGTAGACT------------GAGAAGAGGGAGAGACAGGAAACAAA--ACAAGTTAGCAGCTTCTGG------------TTTCAGAACATTGTGTGAAATCCCTTGAGTCCAGAGGAATCAAAGTGAAATGTAGCAGCCCACTCTTCAT s panTro1.chr19 41800922 518 + 82489036 TGAAGCCCCCCACAGACTTATCACTGCTGAATGAGGGCAGGTAGTGATAGTAGTAGGAGTTGCATACTTGGG---------------GGGGACCCAAGACCCAGTTCTCCCATTGGCTTTGCCTAGAGAAGCATAAACTTGCC--TTCCACTCTCTTTCCACCCTCTCCATCCCCTTCGTGAGCCGTCCTGCCCTCTTCCT--CTCATCCCTGTCTCATAAAGCTGTCCGGTCCCGTGATTCCTCCCAGGAAAAAAATTACATTTT-ATTCCTGGCAGCCTCCTCTTCTAGAGTGGGT--------GGC---TTTTGGAGTGGAGATATTGCTGGATGCTGAGAAGAT-----------------------------GTGGTTGC-----------------------------------------------------------------------------------------------------------TCATCTGC-----ATTTTGGGGATGG----------------CCATGGGGTCCTGGGTTCGATCTCTGGATCACCACTGCTGTATGTAATTGGTAGACT------------GAGAAGAGGGAGAGACAGGAAACAAA--ACAAGTTAGCAGCTTCTGG------------TTTCAGAACATTGTGTGAAATCCCTTGAGTCCAGAGGAATCAAAGTGAAATGTAGCAGCCCACTCTTCAT s mm5.chr11 101264659 575 + 121648857 TGAAGCCTGTCAT-------------CCCAATAAGGAACAGTGGTCATAGTTGTAGGAAGGGCAAGCTTGGGGTGGGCAT-GGGGGTGGGGGCTCAAGACCATGTTCTCCC-TAGGCTTGGCCACAAACAGCATGGGCTTGCT--CTTCCGTCT------------TTCACCTCCACTGTGGGTCCTTCTGCCCTCCTCC---CTCCTCCTGTGCTCATTAA-----CCAGTCTCTTGGTTCTTTCCAGG-----AATTACATTTTAATTCCAGCTAGCCTCCTTTCCAAATGCAACT--------GGC--TTTTTGGATTTGAAAGATTGCTGGGTGGAAAGAAAGT-----------------------------GTGGTTGCTGTCTGGTTTGGTTTTTTTTGTTGTTGTTTGTTTGGTGGTGCTTGGGTTTTT----------------------------------------------------TGTTTGGTTGA-----TTTTTGGGTTTTGTTTTTATT---CACTTTCATCAAGTCTTGGAGTCCGTCTCTGGATCACCACTGCTGGATGTAATTAGTTGACTAAAAAA-AAAAAAAAAAAAAAAAAAGACAGGAAGCAAA--ACGAGTCAGTTGTTTCTGGATGTGCTGCTGCTTTGAGAAAATGGTAAAATATC------------AAAGTGTGAAATAAAACAGAGCAG-CTGCTCTCCAG s rn3.chr10 90627260 595 + 110733352 TGGAGCCTGTCAG----TCATCAC-----GATAAGGAACAGCA-TAACAGTTGTAGGAGGTGCAAGCTTGGGGTGGGCATGGGGGGCGGGGTTTCCAGACCTTGTTCTCCC-TAGGCCAGGC----AACAGCATGGGCTCCCT--CTTCCG---------------TCCACCTCCACTGTGGGTCCTTCTGCCGCCCTCCTCCCTCACCCTGCGCTCATTAA-----CCAGGCTCCTGGTTCTCTCCAGG-----AATCACATTTTAATCCCAGCTAGTCTCCTTTCCAAACGCAAAT--------GGC--TTTTTGGATTAGAAAGATTGCTGGGTGGAAAGAGAGT-----------------------------GTGGTTGC-------------------------------------TGTCTTTCTGTTGTTGTTGGGTTTTTTGTTTTTTGTTTTTTTTTTTTTGTTTTGTTTTTTGTTTTGTGGTTCGGTTGATTGTTTTTTTGGGTTTTGCTTTTGCTTTGTGGTATCATCAGGTCTTGGAGTCCATCTCTGGATCACCACTGCTGGATGTAATTAGTTGACTGAAAAACAAACGAACAAAAACAAAAGACAGGAAGCAAG--ACAAGTTAGTCGTTTCTGGGCGCTCTGC---TTTGAGAATATTGTGAACTAT-------------AAAAATGAGGAGGTAAAAGAGCAG-CTGCTCTTCAG s canFam1.chr9 41067902 561 - 53642819 TAAAGCCCCCAACACACCTGACATTGCTAAATAAGAGCCAGCAAT----------GGAGCCATAGACTTGGG---------------AAGG--CCAAGAGCAAGTTCTCCCATTGGCTTTGCCTACAGAAGCATGGAATCACCTACTTTCTTCTCCCACCACCCCCTCCACCCCCTTC-TGGGTCCTCATGCCCCCTTCTC--TTCATCCCCATCTCACAGAGCTGACCAGCCTCTTGATTCTTTTTAGG-AGGAAATCACATTTTATTCTCAGCTTGCCTTCTCTTCTAGAGTGGATTAGGAGGGGGTCACATTTGGAATGGAGATGCTCCGAGGTGAAAGAAGGGTAAGAAGGCATTCATCTGGTGTGTGGGGGGGCGGTTTG-----------------------------------------------------------------------------------------------------------TTTTTTG------TTTTTGTTTTTTGCTGATGC---------CCAGTGGGGTTGAGGGTCTATCTCTGGATCACCACTGCTGTGTGTAATTCGTTGACT------------GAGAAGAGGGAGAGAGAGGAGGCAAACGGTTAGTCAGCTGTTTCTGGGCCTTCTG----TTCCAAAGCATTGGATCCAGAACATTTATGCCAGAGGAATCAA--CAAAATGAAGCAGCCCAGTCCTTAT a score=0.0 s hg17.chr17_random 30215 14 + 2618010 CCTAGAAGTGCTAG a score=971.0 s hg17.chr17_random 30215 6 + 2618010 CCTAGA s panTro1.chr19 41801440 6 + 82489036 CCTAGA s mm5.chr11 101265234 5 + 121648857 CCTA-C s rn3.chr10 90627855 6 + 110733352 CCTAAA a score=982.0 s hg17.chr17_random 30221 8 + 2618010 AGTGCT-AG s panTro1.chr19 41801446 8 + 82489036 AGTGCT-AG s mm5.chr11 101265239 9 + 121648857 ACTGCTGAG a score=10499.0 s hg17.chr17_random 30229 84 + 2618010 CATCAGTTTCTTTCATCTGTTGCACCTCTGTCAGAGACAC---CTTTCCAATGCCTTGCACAATTGCACAATTATATATTCTTGTTA s panTro1.chr19 41801454 84 + 82489036 CATCAGTTTCTTTCATCTGTTGCACCTCTGTCAGAGACAC---CTTTCCAATGCCTTGCACAATTGCACAATTATATATTCTTGTTA s mm5.chr11 101265248 69 + 121648857 AACCGG-------CACAGGTGGCCTTGCTCTCGG-----------TACCGATGCCCCAGTCAGTCCTGCCATTTTATACAATGATTA s canFam1.chr9 41068463 78 - 53642819 CATCAGGGTTTCTCATCCTTTGCATCTATGTCAGAGAAACCTTCTTTCCAAAG---------ATTGTACTATGTCATGTCCTTCTCA a score=2889.0 s hg17.chr17_random 30313 15 + 2618010 AGAGTTGCCATCCAg s panTro1.chr19 41801538 15 + 82489036 AGAGTTGCCATCCAg s mm5.chr11 101265317 15 + 121648857 GGAGTTACCAGCTGG a score=26094.0 s hg17.chr17_random 30328 273 + 2618010 gccaggcgtggtggctcacacctgtaatcccagcactttgggaggccaagacgggtagatcttttgagaccagcctggccaacatagcaaaaccccatctctactaataatataaaaattagctgggcgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcatttgaacccgggaagtggaggttgcaggtggagtgcagctgagatccagcctgggtaacagagtgagactgtgtctcaaaaaaaaagaaa s panTro1.chr19 41801553 273 + 82489036 gccaggcgtggtggctcacacctgtaatcccagcactttgggaggccaagacgggtagatcttttgagaccagcctggccaacatagcaaaaccccatctctactaataatataaaaattagctgggcgtggtggtacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcatttgaacccgggaagtggaggttgcaggtggagtgcagctgagatccagcctgggtaacagagtgagactgtgtctcaaaaaaaaagaaa a score=2240.0 s hg17.chr17_random 30603 71 + 2618010 GGTTGCCATCCTGAGTTTGATAGCCTACAATGAGCTGGACTCCAAGCTAAGTGCTTTTAATGCTCTTTCCT s canFam1.chr9 41068545 71 - 53642819 AGTGACTGCTCTGGGCTTGCAGGCCTGGATTGAGCCAGGTTCTAAACTGGGGGTTTATGATGCCTTCTCTT a score=90687.0 s hg17.chr17_random 30845 1143 + 2618010 tacgcagccataaaaaaggatgagttcatgacctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagcgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcatgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtacctatgttccaaacctgcacgtcctgcacatgtaccccagaacttGGGAGGGGGTGGGGGAAACCAAAAGAG----CGAGGGAGAGGCGGGGGGGGGGAagagagagagagagggaaagagagagagagacagagagaggagagagagagagagagagagacagagagagagagagagagacagagagagagacagagagacggagagacagagagagagagagagaaagagagagagagagagagagagagagagagagagacaggagaaagaAG---AACTCCGGGTGGGTCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCGTGGCCTTCCCAAAGCGCAGTAGCCACGGTGGAAACGACAGCGTGCCGCATAAGCCTACCGTCTACCGCCC-------GCACATCAGGAACCTC-----AAGGTACTTCAGGGAAGCAGTTAAGTTAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGGTGCTACCGTCTCTTACCTCCCTCTACTTTTAGGAAACACGTTGTATCCCCGGAGGGggtgcaccgttcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagctcctattccatctccctgctccaaaaatccatttaatatattgtcctcggatagaggacgtatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaagcgatGCGCTCGCCTTCGCGCCCGCCGTCACCGTCCCACTCTCATCCACATTCAAGTCGCGGTGAGAGCCCCAGCCTCGCTC s panTro1.chr19_random 2107668 1070 + 57627672 tacgcagccataaaaaaggatgagttcatgtcctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagtgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcgtgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtatctatgttccaaacctgcacgtcctgcacatgtaccccagaacttGGGAGGGGGTGGGGGAAACCAAAAGAGAGAACGGAGGAGAGGCGGGGGGGGGGGTGA------------------------------------------agagagagagaaagagaccgagagagagagaaag--------------------------------------------------agagagagagagagagagagagagagagagagagagaggagaaagaAGTTCAATTCCGGGTGGATCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCGTGGCCTTCCCAAAGCGCAGTAGTCACGGTGGAAACGGAAGCGTGCCGCATAAGCCTACCGTCTACCGCCCACCGCCTGCAGATCAGGAACCTCCCTCACTGGTACTTCAGGGAAGCGGTTAAGTCAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGATGCTACTGTCTCTTACCTCTCTCTGCTTTTAGGAAACACGTTGTATCCCCGGAGGGggtgcaccgttcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagctcctattccatctccctgctccaaaaatccatttaatatattgtcctcggatagaggacgtatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaaaagcgatGCGGTCGCCTTTGCGCCCGCCGTCACCGTCCCACTCTCATCCACATTCAAGTCGCGGTGAGAGCCCCAGCCTCGCTC a score=6549.0 s hg17.chr17_random 31988 94 + 2618010 CTTGCCCCATTCCCTCTGTCTCGTCCACAGCGCTATTGACGCCCTTACACTCTCGGGCTGATTTCTTATTCTCTGCCTTTGAAAAGGGAAATCT s panTro1.chr19 41903348 94 + 82489036 CTTGCCTCATTCACTTTGTCTCGTCCACACCAATATTGACGCCATTACACACTCGGGCTGATTTCTTATTCTCCACGTTTTAAAAGAAAAATCT a score=90434.0 s hg17.chr17_random 32201 1127 + 2618010 AAGGCGAGCGCatcgcttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGTAGAGGGAGGTAAGAGACGGTAGCACCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACTGCTTCCCTGAAGTACCTT-----GAGGTTCCTGATGTGC-------GGGCGGTAGACGGTAGGCTTATGCGGCACGCTTTCGTTTCCACCGTGGCTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACcttttaaaggaatgggacccacccggagtt---cttctttctcctgtctctctctctctctctctctctctctctgtctctccgtctctctgtgtctgtctctgtctctctgtctctctctctgtctctctctctc--tctctctctctctctctcctctctcctgtctctctctctctttccctctctccctctctttccccccccccgcctctccctcg----ctcttttggtttcccccaccccctcccaagttctggggtacatgtgcaggacgtgcaggtttggaacataggtacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcatgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcgctgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggtcatgaactcatccttttttatggctgcgtagtaattccatgctgtatacgtgccacactttctttatccagcctatcattcatgggcattcgag s panTro1.chr19_random 55519000 1068 - 57627672 AAGGCGACCGCatcgcttttcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGCAGAGAGAGGTAAGAGACAGTAGCATCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACCGCTTCCCTGAAGTACCAGTGAGGGAGGTTCCTGATCTGCAGGCGGTGGGCGGTAGACGGTAGGCTTATGCGGCACGCTTCCGTTTCCACCGTGACTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGATCCACCCGGAATTGAACTtctttctcctctctctctctctctctctctctctctc----------------------------------------tctctctctctttctctctctctcggtctctttctctctctctTCAC----------------------------------------CCCCCCCCCCGCCTCTCCTCCGTTCTCTCTTTTGGTTTCCCCCACCCCCTCCCaagttctggggtacatgtgcaggacgtgcaggtttggaacatagatacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcacgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcactgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggacatgaactcatccttttttatggctgcgtagtaattccatggtgtatacgtgccacactttctttatccagcctatcattcatgggcattcgag a score=95051.0 s hg17.chr17_random 33524 1153 + 2618010 CCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCGAAGGCGAGCGCatcgcttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGTAGAGGGAGGTAAGAGACGGTAGCACCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACTGCTTCCCTGAAGTACCTT-----GAGGTTCCTGATGTGC-------GGGCGGTAGACGGTAGGCTTATGCGGCACGCTTTCGTTTCCACCGTGGCTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACcttttaaaggaatgggacccacccggagtt---cttctttctcctgtctctctctctctctctctctctctctgtctctccgtctctctgtgtctgtctctgtctctctgtctctctctctctctctctctctcctctctcctgtctctctctctctttccctctctccctctctt--tccccccccccgcctctccctcg----ctctttTGGTTTCCCCCACCCCCTCCCaagttctggggtacatgtgcaggacgtgcaggtttggaacataggtacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcatgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcgctgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggtcatgaactcatccttttttatggctgcgtagtaattccatgctgtatacgtgccacactttctttatccagcctatcattcatgggcattcgag s panTro1.chr19_random 55518954 1114 - 57627672 CCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCAAAGGCGACCGCatcgcttttcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGCAGAGAGAGGTAAGAGACAGTAGCATCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACCGCTTCCCTGAAGTACCAGTGAGGGAGGTTCCTGATCTGCAGGCGGTGGGCGGTAGACGGTAGGCTTATGCGGCACGCTTCCGTTTCCACCGTGACTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGATCCACCCGGAATTGAACTtctttctcctctctctctctctctctctctctctctc--------------------------------------tctctctctctttctctctctct--------cggtctctttctct--------------ctctctTCACCCCCCCCCCCGCCTCTCCTCCGTTCTCTCTTTTGGTTTCCCCCACCCCCTCCCaagttctggggtacatgtgcaggacgtgcaggtttggaacatagatacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcacgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcactgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggacatgaactcatccttttttatggctgcgtagtaattccatggtgtatacgtgccacactttctttatccagcctatcattcatgggcattcgag a score=67511.0 s hg17.chr17_random 37365 767 + 2618010 GCAttttttcctttttttttttttttctttcagggagggtctcac-tctgttgcacaggctggagtgcagtggtgtgatcaccacttacggcagcctcaacctctggtgctcaagcgatcttcaccttagcctcccaagtagcttggactccaggtatgtgccaccatgcccagctagttttgtttttttttttcgttttttttttttttttaaacgaagtctcgctctgtcaccaggttggagtgaagtggcacgatcttggctcactgcaaccttttcctcctgggttcaagtgattctcctgcctcagcctcccgagcagctgggactacaggcacatgccacccacccagctaatttttgtatttttagtagagatggggtttcgccatgttggccaggatggtcttgatctcttgacctcatgatctgcctgcctcagcccctcaaagtgctgggattacaggtgtgagccaccgtgcctggctacccagctagtttttaaaattttttgttgttgttgagatggagtctcactctgttgcccaggctggtctcaaacttctgggctcaagcgatcctctcaccttgatctcccaaagtgctgggattataggcatgagccCCACACACTTGGCtttttttcaatttttttcaatttttttcaatttttttttttttttggagatgtctgaacctgaactcctgggctcaagcaatactcctgcctcagcttcccaagtagccaagactacTGCACCCAGCTT s panTro1.chr19 41802305 756 + 82489036 GCAttttttcctttttttttttttt-ctttcagggagg-tctcaccttttttgcacaggctggagtgcagtggtgtgatcaccacttacggcagcctcaacctctggtgctcaagcgatcttcaccttagcctcccaagtagcttggactccgggtatgtgccaccatgcccagctagttttgtttttttttt-cgttttttttttttttt-aaacaaagtctcgctctgtcaccaggttggagtgaagtggcacgatcttggctcactgcaaccttttcttc-tgggttcaagtgattctcctgcctcagcctcccgagtagctgggactacaggcacatgccacccacccagctaatttttgtatttttagtagagatggggtttcgccatgttggccaggatggtcttgatctcttgacctcatgatctgcctgcctcagcccctcaaagtgctgggattacaggtgtgagccaccgtgcctggctgcccagctagtttttaaaattttttgttgttgttgagatggagtctcactctgttgcccaggctggtctcaaacttctgggctcaagcgatcctctcaccttgatctcccaaagtgctgggattataggcatgagccCCACACACTTGGCtttttttcaatttttttcaatttttttcaatttttttT-------GGAAATGTCTGaacctgaactcctgggctcaagcaatactcctgcctcagcttcccaagtagccaggactacTGCACCCAGCTT a score=2260.0 s hg17.chr17_random 38132 12 + 2618010 CCTACCCAAACA s panTro1.chr19 41803061 12 + 82489036 CCTACCCAAACA s canFam1.chr9 41069082 12 - 53642819 CCCTCCTAGACA a score=7898.0 s hg17.chr17_random 38144 36 + 2618010 TTTTTAATGGTGGCAAAGAATAG-----------------AGGAATAGACCAT s panTro1.chr19 41803073 36 + 82489036 TTTTTAATGGTGGCAAAGAATAG-----------------AGGAATAGACCAT s rn3.chr10 90628500 52 + 110733352 TTTTTAAAGGAGG-GTAGAGTAGATGGGGGACAACAGCCCAGGAGTGGAGCAT s canFam1.chr9 41069094 35 - 53642819 -TTTTTTTGAAGGCAACAAATGG-----------------AGAAATAGACCAT a score=5687.0 s hg17.chr17_random 38180 12 + 2618010 CCAGAAGTAA-TT s panTro1.chr19 41803109 12 + 82489036 CCAGAAGTAA-TT s mm5.chr11 101265918 13 + 121648857 CCAGAAGTGACTT s rn3.chr10 90628618 13 + 110733352 CCAGAAGTGACTT s canFam1.chr9 41069129 12 - 53642819 CCAGAAATGACT- a score=239497.0 s hg17.chr17_random 38192 973 + 2618010 TGAAATAATTCTAGTCTCCTCCCCTTACTCCTGCT-AAGGAGGTTTCTCTGGACTacacacacacacacacacactcacac----------------------------------tctctctctctctctctctttctttct----------------------------------------GTCACCCAGAGTCTGTCTTTCACAGTCTGTGTCCCTATCTTACCTTGAGTTGTGAATACCCAGTGTTTCTGATGGGGCTAGATTGGCATGGGTTCATGAGACCTGATGATGAAACAAAGTACAGGTTACTCATCCAGCAGTTTTCCAAGGATGGAATACTGCAAGCCTGGAGTGCT-----TGTGTCTGGTGACCCAGGGGGTGATGGGGGTGCAGTGAG-GACAGGCTCCTACCTGGGACAGGGCACAGACTGAGCCCTTCCTGAAGATTCTCAACTAGGAAGCTGTGCTGTGGTTCCCTGTTCCAGACCTCACGGGGCTCAG--TATATCTGTTAATAAGCCTACAACTCATGTCCCACCCTCTGATCACCCCCACCTCCTCTGTCACGCTTACTCTGGAAGAAGGGCCGACAGCTTCTCAACCACTCTCTGCAGAAGTTGGAAGGCTCCTTTGCAGCCGTAGGTTGGCATTAACCCA-CCCAGGGGGAGTTGACCAGCAAGGC-ATTAAAGG-CCGAGGGTACTTGGGAGAGTCAGAGAGGGTAGGGTGGTAGATATGGATTCTACACTACAGGGCCGGGATGGAAGCAAAGGGCTCCTCTCCTTACCACCTCCCACTCCCAG--GCTCCAGT--CCAGAGTCTGTAAGGA-------TTTTCTGCCCACCCTGGAATCTGTTGTTGATACAGAGATTGCCCTCCAGCTTAGTAGATCCCCGCTGAAGTAGGCTGGTGACCTGGCCTTTGGGAATC---CTGGAGATTGCATTTGGAGGTGTGCTGAGTACAACGGGCTTGAGCACTtggttgtgttggctgaggtggtggctgtggttgtggtggctgtg------gccctggccacacctgtgcctgtggcaatgttgatgg s panTro1.chr19 41803121 1034 + 82489036 TGAAATAATTCTAGTCTCCTCCCCTTACTCCTGCTTAAGGAGGTTTCTCTGGACTacacacacacacacacacacacacacacacacacacacacacacactctctctctctctctctctctctctctctctctttctctctctttctctctctttctctttctctttctctttctttctcAGTCACCCAGAGTCTGTCTTTCACAGTCTGTGTCCCTATCTTACCTTGAGTTGTGAATACCCAGTGTTTCTGATGGGGCTAGATTGGCATGGGTTCATGAGACCTGATGATGAAACAAAGTACAGGTTACTCATCCAGCAGTTTTCCAAGGATGGAACACTGCAAGCCTGGAGTGCT-----TGTGTCTGGTGACCCAGGGGGTGATGGGGGTGCAGTGAG-GACAGGCTCCTACCTGGGACAGGACACAGACTGAGCCCTTCCTGAAGATTCTCAACTAGGAAGCTGTGCTGTGGTTCCCTGTTCCAGACCTCACGGGGCTCAG--TATATCTGTTAATAAGCCTACAACTCATGTCCCACCCTTTGATCACCCCCACCTCCTCTGTCACGCTCACTCTGGAAGAAGGGCCGACAGCTTCTCAACCACTCTCTGCAGAAGTTGGAAGGCTCCTTTGCAGCCGTAGGTTGGCATTAACCCA-CCCAGAGGGAGTTGACCAGCAAGGC-ATTAAAGGCCCGAGGGTACTTGGGAGAGTCAGAGAGGGTAGGGTGGTAGATATGGATTCTACACTACAGGGCTAGGATGGAAGCAAAGGGCTCCTCTCCTCACCACCTCCCACTCCCAG--GCTCCAGT--CCAGAGTCTGTAAGGA-------TTTTCTGCCCACCCTGGAATCTGTTGTTGATACAGAGATTGCCCTCCAGCTTAGTAGATCCCCGCTGAAGTAGGCTGGTGACCTGGCCTTTGGGAATC---CTGGAGATTGCATTTGGAGGTGTGCTGAGTACAACGGGCTTGAGCACTtggttgtgttggctgag---------------gtggtggctgtg------gccctggccacacctgtgcctgtggcaatgttgatgg s mm5.chr11 101265931 786 + 121648857 TGAAATGATTCCAGTTCTCTCCCTGGACCTATGCT-AAGAAATCCCCCTTGGCTTCCACAGGCACAGGAGGACCTGCACTC-------------------------------------------------------------------------------------------------AACGCTTAGCCAGAGCCCCTTTACC----------------TCTCACCGTGAGTCGGGAATATTTAG---------AAGAGCTAGACTGGCAATCATTCGTGATACC---TGATAAGACAAAGCACAAGTCACTCAACTAGCAG-TCGCTAAGGAGG-------------CTGGGG-------------------------------------------GTAGG-AATAGGC-CCTTCCTGTGGCTAGGCACAGAA------------------TCTCCACTAGGAAGGCATTCTGTGGTTCCCTGTTCCAGACTTTATAGGGCTCAAATTTTATCTGCCGATAA-CCTACAACAT---CCCCACCTT------------ACCTTCTCTGCCATG----CCCTAGAAAAATGACCGACACCTACCCAATCACTCTATTC-------------TTTCTTTACTAACTTAGGTTGGAGGAAATCTA-TTCAGAAGGAG--GACATTTAAGGCTGTTAGAGG-ACAAGAGTGCCAGGAAAGATTGGACAGGACAGGGACCAAGAGA--ACTTCTAAACTACAGGACTGGGGTGCGTGTAAGGGGC----CCCCTCACCTCCTGCC-CTCTCGGCTGCCACACTCACCGCGGCCTGGAAGGATGGGGGGTTTACTGCACACTC----------------TACAG-GATTGCTGGCCATCTTGTTGAGCTCCGGTTGGCTTAGTCTGGGGTCCTTGCCTTTGGGTGTCTTTTTGGAGACCATCCTTGAAGATGCTCTGTGTAGGTGGGTCTTGCTCCTTTTGTGACTTTGGCCCAGGCG------------GCTGTGGCTGT--------CCTTG----TGCCTTCTCCTGTGGCTGTGCT----- s rn3.chr10 90628631 804 + 110733352 TGAAATGATTCCAGTTCTCTCCCTAGACCTATGCT-AAGAAATCCTCCTTGGCTTCCACAGGCACAGGAAAACCTGCCCTC----------------------------------------------------------------------------------------------------AGTTAGCCAGAGCCCCCTTGCC----------------TCTCACCGTGAGTCGGGAATATTTAG---------AAGAGGCAGGCTGGCAAACATTCGTGAGACC---TGATGGGACAAAGCACAAGTCACTCATCTGGCAG-TTGCTAAGGATA-------------CTGGGG-------------------------------------------GTGGG-GCTAGGC-CCTTCCCGGGGCTAGACACAGATTAAACCTCCTGCGAAGAATCTCCACTAGGAAGCCATTCTGTG-------GTCCCAGACTTTACAGGGCTCAAGTTGTATCTGCCCATAG-CCTACAACAT---CCCCCC---------------ACCTTTTCTGCCACA----TCCTAGAAGAGTGGCTGACACCTACCCAATCGCTCTATTCAGAAG--------CTTCCTTACTGCCTTAGGTTGGAAGAAATTCATTCCAGGAGGAG-----------GCC-ACTTAAGC-GCAAGGGGGCCGGGAAGGGTTAGACAGGACAGGAGGCAATGGA--ACTTCTAAACTACAGGACTGGGATGGGTGTAAGGGGC----CCCCTCACCTCCCGCC-CTCAAAGGTAGCATACTCACCAGGGCCTGGAAGGACTGGGGGTTTATCACACACTT----------------TACAG-GCTTGCTGGCCGTCTTGTTGAGCTCCCGAGAGTCTAGTCTGGGGTCCTTGCTTTTGGGTGTCCTTCTGGAGGCTGTCCTTGAAGGTGCTCTGTGTAGGAGGGTCGTGCTCCTTTTGTGACTTTGGCCCAGGTG------------GCTGTGCTTGTGCCTGCTCCTGTGGCTTTGCCTGCTGCTGTGGCTGTGTAGGTGG s canFam1.chr9 41069353 847 - 53642819 TAAAATATAAATAACTGCAGCCCTTCACC-------AACAAAGCCTTCCTAGATTacacacacacacacacgcacacacac----------------------------------------------------------------------------------------------------------ccacGGTCTACCTGCC------TTTCACACTGTCTCACCGTGAATCGTGAGTGCTCCGTGTATTTATCTGGATTAGATTGGAATGATTTCCTGAAACCTGATGATAAAACAAAGCACACATTACTCATCTGACAGTTTCTGAAAAATGGAACATGGCAGAGCTGGACTCTCTACTATGTGTCTGGGAG----------------------GCAGGTGGCAGCC-CCTCCCTGGGGCAAGGCACAGACTGAGCCCACTCTGAAAATTCACAACCGGGAAGCTGCACTGTGATTCCCTGTTCCAGACTTCCCATGGCTCAG--TACATCTCTTGTTGCATCTGCAACTCAGATCCCACCCT------------CACCCCTCTGACACCCTCGCCCCTGAGACAGGGCTGCCAACATCACAGCCACTCCCCGCAAAAGTCAGCAGCCTCCTTTGCACCCCCAGAGTGATGCAAATGTC-TCGGGGGGGAT---ACCCCCCAAAC----AAAGG-CCAAGGGTACCAGGGAGAGTCTGTGACAGTGGGAGGATAGCTGTGGATTCTGGA-TGTAGGGCTGGGGTGAGAGCAGGGAGCTC--CCCCTCACCACTTGCC-CTCCCAGGTGTTTCACTTACTAGGGCCTTGCAGGG-------GTTTTGTTCCTCCTAAGAATCTGTTAA---GATTG-GATTGCTCTCCTGCTTGATGGGTCCCTACTGAGCCAAGCTGGGGACCTGGCTTTGAAGAATC---CTGCAGACTGTGCACAAAGGTG---------AGAGGCTCTTGGGCATTCTGTTGCTTCGACTGAGGTGGCG---------GCGGCATCTGTG------ACTCTT--------------CGAGGA----------- a score=0.0 s hg17.chr17_random 39165 2 + 2618010 ct a score=313.0 s hg17.chr17_random 39165 2 + 2618010 ct s panTro1.chr19 41804155 2 + 82489036 ct s mm5.chr11 101266717 1 + 121648857 -T a score=9772.0 s hg17.chr17_random 39167 66 + 2618010 gtggtggtggctgtgatggtggctgcactgatggctgctgctgtgatggctgtggtTGCTCCTGTG s panTro1.chr19 41804157 66 + 82489036 gtggtggtggttgcgatggtggctgcactgatggctgctgctgtgatggctgtggtTGCTCCTGTG s mm5.chr11 101266718 60 + 121648857 GTTGCTCTGGCTGTGCAGGCGGTGGCCCTTTTGAATCCTGTTGGGGTCCTTTTGAATCCT------ s canFam1.chr9 41070200 60 - 53642819 ---GCTGTGGTTGCGCTGGTGGTGGCCTGAGTGACAGCTGCTG---CTCCTGTCGCAAATCCCGTG a score=0.0 s hg17.chr17_random 39233 48 + 2618010 ATGTCCACAATTTCGCCACTGGTGGTTGCGGCACATTTAACTTCTTAT a score=2161.0 s hg17.chr17_random 39233 24 + 2618010 ATGTCCACAATTTCGCCACTGGTG s panTro1.chr19 41804223 24 + 82489036 ATGTCCACAATTTCACCACTGGTG a score=6230.0 s hg17.chr17_random 39257 24 + 2618010 GTTGCGGCACATTTAACTTCTTAT s panTro1.chr19 41804247 24 + 82489036 GTTGCGGCACATTTAACTTCTTAG s mm5.chr11 101266778 24 + 121648857 GTTGGGGTCCTTTTGAATCTTGGT s rn3.chr10 90629578 24 + 110733352 GCTGTGGCCCTTTTGAATCCTGAT a score=64217.0 s hg17.chr17_random 39281 195 + 2618010 GTGGCTGGAGTTTTTCCTCCGATTGTTGTTCTTCCTCCTGGTGATTCTTCAGTTCCTGGC------------------------------AAGAAGCCCCCGGGCAAGTGGCATCAT--CCTCTCCCCACCCAATCACCCATCTGCCAGAGAAACTTCAGGGAACAAGGCAAG---TGAGTAGAGAAGTATAGG-TGGCAGTGGTCTCTGT---TCCCTAGAGCTGGAGGCTGA s panTro1.chr19 41804271 195 + 82489036 GTGGCTGGAGTTTTTCCTCCGATTGTTGTTCTTCCTCCTGGTGATTCTTCAGTTCCTGGC------------------------------AAGAAGCCCCCAGGCAAGTGGCATCAT--CCTCTCCCCACCCAATCACCCATCTGCCAGAGAAACTTCAGGGAACAAGGCAAG---TGAGTAGAGAAGTATAGG-TGGCAGTGGTCTCTGT---TCCCTAGAGCTGGAGGCTGA s mm5.chr11 101266802 209 + 121648857 GTGGCTGAGATGTTTTCTCAAAATGCTGTTTCTTCTCTTCCTGCTTTTTTGCATTCTAGCAAAAAAAAAACAAAAACAAACAAACAAACAAAAAAAAAACCCAGCAAGTGACATCAT---CTCTCCTCAC------------CTACAAGATAAACT--GGGCAGTGGAGCAAG--------GGAGAAGTGTAGACTGCCAGAAGTCTGTCTCTATCCTTTGAACTAGAGGCTGA s rn3.chr10 90629602 168 + 110733352 GTGGCTGAGATGTTTTCTCAGAATGCTGTTTCTTCTCTTCCTGTTTTTTTGCTTCCTATC------------------------------AAGAAACACCC-AGCAAGTG--ATCAC---------TCAC------------CTACGGAATAAACT--GGGCCGTGGAGCAAG--------GGAGAAGTGTAGATTGTGAGAAGTGTCTTT--ATCCCCTGAATTGGAGGCTGG s canFam1.chr9 41070260 200 - 53642819 GACGCTGGGTTTTTCTCTCAGATTGCAGTTCCTCCTCTTGGAGTTTCCCCAGTTCCTGAC------------------------------AAGAAGCCCCT-GGCAAGTGGCATCCTTCTCCCTCCCCTCCCAGTCACCCATCAGCCAGAGACTCTGCAGGGAGCAAGGCAAGCAATCACTGGAGATGCAGAGGTGGCTGAGGGTCTCTGT---TCCCTGGAGTTGGAGGCTGG a score=0.0 s hg17.chr17_random 39476 12 + 2618010 AATTGGGCCTAC a score=1436.0 s hg17.chr17_random 39476 12 + 2618010 -AATTGGGCCTAC s panTro1.chr19 41804466 12 + 82489036 -AATTGGGCCTAC s rn3.chr10 90629770 13 + 110733352 AGCTAGGGCCGAG a score=35316.0 s hg17.chr17_random 39488 153 + 2618010 GCTGTCTGCC-TCACCCACTGTGACACCCAAGAACGATTTC-TGGG-----------TGGCACAGCCCC-------------AGCCCAGGAAATAGCACTCTCTCTGAGCACCTGCTTCCTCACTTGAGAGCTCAGCACTGAAAGCAGTTTTTAGTGCTGGAGGATAAAGAGTAATTCC s panTro1.chr19 41804478 153 + 82489036 GCTGTCTGCC-TCACCCACTGTGACACCCAAGAACGATTTC-TGGG-----------TGGCACAGCCCC-------------AGCCCAGGAAATAGCACTCTCTCTGAGCACCTGCTTCCTCACTTGAGAGCTCAGCACTGAAAGCAGTTTTTAGTGCTGGAGGATAAAGAGTAATTCC s rn3.chr10 90629783 163 + 110733352 GCTGTTTCCA-TTCTCCAGGATAGTAGCCAAGGCATGGTTC-TGAA-----------TAGCTGGGCTCCTTTGCTTAACTCATGGCCAGGAAGTGGCCCAGTCTC--AGTGTCTATTTACTGGGTTG-GAATTTAGCATTGAAAGTAGCTGTTAAAGCCAGAGGATAAAGAGCTGTTCC s canFam1.chr9 41070460 164 - 53642819 GCTCTCTCCCTTCACCCTCCATGAAACCCGAGAACTGTTTCATGTGACAGTACCTCCTAGCACAGCCCC-------------AGCCCTGGAAATGGCAGACTCTG--AGCACCTACCTCCTACCTTGATAGCTGTGCACTGAATACAGTTTGCACTGCTGGAGAATAAAGAATACTTTC a score=2059.0 s hg17.chr17_random 39641 9 + 2618010 CTGCAAATG s panTro1.chr19 41804631 9 + 82489036 CTGCAAATG s canFam1.chr9 41070624 9 - 53642819 CTGCAAACA a score=42879.0 s hg17.chr17_random 39650 478 + 2618010 tcttgtgttttgttttttagagataggttcccactctgtcacccaggctggagtgcagtagcacttttatgactcactgtaatctggaactactgggctcaagtgattctcctgcctcagcttcgcaagtagctaggactacaggtgcacaccaccatgcccggttaattttttttttttaatagagacagggactcattatgttgcccaggctggagtgcagtaagtggtgcaatcttggctcactgctgccccaacctcccaggctcaagcgatccttccacctcagcctcctgagcagcttggactaaatgcatgtgccaccatgccttgctaatttttaaattttctgtagagacagggtccccctatgttgcctaggttggtttggaactcctagcctcaagcgatcctcccacctcagcctcccaaagtgATTTTTTTAATAGCCCAAGGGTGCTTCTAAACCTTACAAGTG s panTro1.chr19 41804640 477 + 82489036 TCTTGTGttttgttttttagagataggttcccactctgtcacccaggctggagtgcagtagcacgattatgactcactgtaatctggaactactgggctcaagtgattctcctgcctcagcttcgcaagtagctaggactacaggtgcacaccaccatgcccggttaa-tttttttttttaatagagacagggactcattatgttgcccaggctgaagtgcagtaagtggtgcaatcttggctcactgctgccccaacctcccaggctcaagcgatccttccacctcagcctcctgagtagcttggactaaatgcatgtgccaccatgccttgctaatttttaaattttctgtagagacagggtcccgctatgttgcctaggttcctatggaacttctgttctcaagcgatcctcccacctcagcctcccaaagtgATTTTTTTAATAGCCCAAGGGTGCTTCTAAACCTTACAAGTG a score=8731.0 s hg17.chr17_random 40128 39 + 2618010 CTTTGAAATAGCAGTGTCAAATAAAAATATAATTCATGC s panTro1.chr19 41805117 39 + 82489036 CTTTGAAATAGCAGTGTCAAATAAAAATATAATTCATGC s canFam1.chr9 41070854 39 - 53642819 CTTTGAAAcagcactgtccaatagaaataaaatgcatgc a score=27789.0 s hg17.chr17_random 40167 299 + 2618010 TGggccggacgcggtggctcacgcctgtcatcccagcactttgggaagccgaggcgggcggatcacgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagttgggcttggtggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttaaacccaggaggcggaggttgcagtgagccaggatcatgccactgcactccagcctgggcgacagaatgagactccgtctcaaaaaaagaagaagaag s panTro1.chr19 41805156 298 + 82489036 TGggccggacgcggtggctcacgcctgtcatcccagcactttgggaagccgaggcgggcggatcacgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccccgtctctactaaaaatacaaaaattagttgggcttggtggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaattgcttaaacccaggaggcggaggttgcagtgagccaggatcatgccactgcactccagcctgggcgacagaatgagactccgtct-aaaaaaaaaaaaaaaaG a score=48495.0 s hg17.chr17_random 40620 589 + 2618010 ccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgc--acacacgcgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCAGCTACAACATAATCAGGATATTCACGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTAGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACACAATCTCCGCCGCCCTGTCTTGTCATCCCCAttctacagcccagcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacgtgggattttgacggcagtgggagcaaaaTTCTCCCAAtttttttttttttttttttttttcagacggaggttccgctcttgttacccagcctg-gagtccaatggcgcgatctaggctctctgcaa-cctccgcctcccgggttcaagcgattcccctgcctcagcctcccgagcagctgggactacaggcatgtg-ccaccacgcccggctaactttgtatttt s panTro1.chr19 40636197 587 - 82489036 ccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgcgcacacacacgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCGGCTACAACATAATCAAGATATTCATGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTGGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACCCAATCTCCGCCGCCCTGTCTTGTCATCCCCATTCTACAGCCCAgcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacatgggatttTCACGGCAGTGGGAGCAAAATTCCCCCAAttttttttttttttttt-------aaacggaggtttccctcttgttacccagcctgagagtcaaatggcgcgatttaagctctccgcaaccctccccctcccgggttcaaccgattcccctgccccacccctccgagcagctggaaatacaggcttgggcccaccccgcccggctaaagttgtatttt a score=4933.0 s hg17.chr17_random 41774 79 + 2618010 TCAGAACTCCGATTGGGTGTCACCCCGTGCAGGAAGCCCTCCTTTAGTCAAGG-CCCTCGGCACCCGCCCCATATGTGAC s panTro1.chr19 41904779 78 + 82489036 tcaggactccgcttgggtgtcaccc-gtccaggaagcc-tcccttaattaagggccctcggcacccaccccatatgtgat a score=116187.0 s hg17.chr17_random 41853 1271 + 2618010 TAGCAGCCCTCCTGTGTATTTCATCGCGCCCCCGTTGTTTATATCAGCCATTCCACTCACCACCCTTCTGGGCAACCCTttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagtaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACG-------------------ACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGGCTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGgctgagggctctactgcgcattacctggaaaacttatttcactccacggccctaagaggtgggccttattatTAGCcatggccagggttagggtgaggccactcctccagggcagaatttcagggggtgcccacccccccgccctaaatcattcagcaatcaacataaattatagttcaacgcaatgtatcttaTCTtgtgggccgcaagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtacagcgaagaaaataattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcatcactctttgttctattaccataatgatctctgttctattatgattaccttgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccagaagacgagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagc-gtggccccagtgcctgggaaggcacccgttacttagcagacccggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcatccggaggctccaacgtctgtctccctgtgatgctgtgcttcagtggtcacgctccttgttcactttcatgttcagcctgtacacctggctcC s panTro1.chr19_random 55302653 1287 - 57627672 TAGCAGCCCTCCTGTGTATTTCATCGCGCCCCCGTTGTTTATATCAGCTATTCCACTCACCACCCTTCtgggcaaccctttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagcaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACGGCAGACCGTGATGAGCACGACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGACTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGGCTGAGGGCTCTACTGCGCATTACCTGGAAAACTTATTTCACTCCACGGCCCTAAGAGGTGGGCCTTATTATTAGCcacggccagggttagggtgaggcctctcctccagggcagaatttcagagggtgcccacccccccgccctaaatcattcagcaatcaacataaactatagttcaacgcaatatATCTTATCTtgtgggccgcaagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtatagtaaagaaaattattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcattactctttgttctattaccataatgatctctgttccattatgattaccctgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccaggagacaagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcaggccgggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcagccggaggctccaac----gtctccctgtgatgctgtgcttcagtgggcacgctccttcttcactttcatgttccgcctgtacacctggctcc a score=100949.0 s hg17.chr17_random 43224 1165 + 2618010 GGGAAGGCCCTGGTTACTTAGCAGGccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcagacccggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcatccggaggctccaacgtctgtctccctgtgatgctgtgcttcagtggtcacgctccttgttcactttcatgttcagcctgtacacctggctcctccttttaagttcttagaagacagcagtagcagaactagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtgcacacgtgactcgcgtgacctatcgatcattggagatgactggcactccttaccctgcccccttgccttgactacaataaatagcagcgcctccaggcactcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgc--acacacgcgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCAGCTACAACATAATCAGGATATTCACGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTAGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACACAATCTCCGCCGCCCTGTCTTGTCATCCCCAttctacagcccagcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacgtgggattttgacggcagtgggagcaaaaTTCTCCCAAtttttttttttttttttttttttcagacggaggttccgctcttgttacccagcctg-gagtccaatggcgcgatctaggctctctgcaa-cctccgcctcccgggttcaagcgattcccctgcctcagcctcccgagcagctgggactacaggcatgtg-ccaccacgcccggctaactttgtatttt s panTro1.chr19 40635625 1159 - 82489036 gggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcaggccgggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcagccggaggctccaacgtct----ccctgtgatgctgtgcttcagtgggcacgctccttcttcactttcatgttccgcctgtacacctggctcctccttttaagttcttagaagacagcagtagcacaattagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcactggagatgactggcactccttaccctgcccccttgccttgactacaataaatagcagcgcctccaggcattcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgcgcacacacacgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCGGCTACAACATAATCAAGATATTCATGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTGGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACCCAATCTCCGCCGCCCTGTCTTGTCATCCCCATTCTACAGCCCAgcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacatgggatttTCACGGCAGTGGGAGCAAAATTCCCCCAAttttttttttttttttt-------aaacggaggtttccctcttgttacccagcctgagagtcaaatggcgcgatttaagctctccgcaaccctccccctcccgggttcaaccgattcccctgccccacccctccgagcagctggaaatacaggcttgggcccaccccgcccggctaaagttgtatttt a score=66851.0 s hg17.chr17_random 44998 860 + 2618010 CAGGGCCACCCATAACTGTGAATGTGCAGGAACCCTGACTT--------------------------AGGTTCCTGGGGAATGAGAGTTTGGTTCCCGGTACCCAGGGAAACCACCAGCATCGGCAGAGGTGATAGCTGGGGAGGAGCGGGGATTTGGACGAGAGACACAGGATGAGTACCGGGGGCAGCCCTGTGATCAACAACTGCTGCAAGAGGGGCCGTTTGTTCGACTCACTAGTCTTCTGTGGCTCTATGCGGTACTAAAGAGCAGAAGACAGAAGAtacaaaaaccacaaaaattagccgggcgtggtgctgcgcgtcaataatcccagctactcgggaggctgagatgggagaatcgcttgaatccgggaggtggaagtttcagcgagctgagatcacgccattgcagtccaacctgagcgtccgagcgaga--ctatctcagaaagtaaagacagaaTTAAAGTgcccagcgcagtggctcacgcctgtaatcccagcgctttgggaggccgaggcgggcagatcacctgaagtcaggagttcgagaccagcctggccaacttggcgagacctccttaaaaatacaaaaattagctgggcgtggtggcaaacacctgtaatcccagctacccaaggaggctgaggcaggagaatcactggaacccgggaggcagaggctgcagtgagccgagatcgcgccactgcactccagcctgggtgacagagcaagactttgtct--ctgaaaaaaaaaaaaaaaaaaaaGCATgggc--gcggtggctcatgcctgtaatc----ccagcactttgggaggctgaggc----gggcagatcat--gaggtcaggagatcgagaccatcctggctaacacggtgaatccccgtctctac s panTro1.chr19 41842883 897 + 82489036 CAGGGCCACCCGTAACTGTGAATGTGCAGGAACCCTGACTTGAGAAGGGCCTGGCCACGGGGGGCTTAGGCCCCTGGGGAATGAGAGTTTGGTTCCCGGTACCCAGGGAAACCACCAGCATCGGCAGAGGTGATAGCTGGGGAGGAGCGGGGATTTGGACGAGAGACACAGGATGAGTACCGGGGGCAGCCCCGTGATCAACAACTGCTGCAACAGGGGCCGTTTGTTCGACTCGCTAGTCTTCTGTGGCTCTATGCGGTACTCAAGAGCAGAAGACAGAAGAtacaaaaaccacaaaaggtagccgggcgtggtgctgcccgtcaataatcccagctactcgggaggctgagacaggagaatcgcttgaacccgggaggcggaagtttcagcgagccgagatcacgccattgcagtccaacctgagcgtccgagcgagactctatctcagaaaataaaGACAGAATGAAAGagcccggcgcggtggcttacgcctgtaatcccagcgctttgggaggccgaggcgggcggatcgcctgaggtcaggagctggagaccagcctggccgacatggcgaaacc-ccctaaaaatacaaaaatgagccgggcgtggtggcctacgcctgtaatcccagctaccc-aggaggctgaggcaggagaatcgctggaacccgggaggtagaggctgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagagtttgtctgccaaaaaaaaaaaaaaaaaaaaaaGCCAGGGTGAgcggtggctcaagcctgtaatcgcaagcaacactttgggaggc---ggcagctgggcggatcaccggaggtcgggagttggagaccagcctgaccaacatggagaaaccccatgtgtac a score=24958.0 s hg17.chr17_random 45858 308 + 2618010 taaaagtacaaaaaaattagccagacgtagtggcaggtgcctgtcgtccccgctacttgggaggctgaggcagaagaatggcgcgaacccaggaggtggagcttgcagtgagccgagatgcgccactgcactccagcctcagcgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaa---------GCTTgggccagtggctcacacctgtaatcccagcactttgggaggcggcaggcaggcggatcaccagaggctgggagttggagaccagcctgaccaacatggagaaaccccaatctgtactaaaaa s panTro1.chr19 41810610 316 + 82489036 taaaattacaaaaaaattacccagacgtggtggcgggtccctttcttcccagttactggggaggctgaggcagaagaatggcgcgaccccaggaggtggagcttgcagtgaccggagatgcaccactgcactccagcttcagggacagagtgagactccttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaGCTTgggccagtggctcacacctgtaatcccagcactttgggaggcggcaggcaggcggatcaccagaggttgggagttggagaccagcctgaccaacatggagaaacccca-tctgtactaaaaa a score=4752.0 s hg17.chr17_random 46166 30 + 2618010 GCCTCTGAGGAAGAGTGGGGGAAAGATGCC s panTro1.chr19 41810926 30 + 82489036 GCCTCTGAGGAAGAGTGGGGGAAAGAAGCC s canFam1.chr9 12569602 30 + 53642819 GAATCCTGGGAAGGCTGGGAGGAAGAAATC a score=55656.0 s hg17.chr17_random 46196 269 + 2618010 ACAGAGAAAAGACTTTACTGCT----GAATTGTCCATGGGGCCCACTGAGACTCAAAGCTAAGGTGGGAAG--GTCTTCTAT--CTGATCAGGACCCAGGAGAGAAAGATACTTTGCAGATGTTTCCTGGGAGCCTTGGGAAAAATGCCTCCCTCCCTCAACAAAGCAGGCGGGGCCTGCCCAGTTGCCCTGG---------CAGTAACCACATTGTGAGGTGGTTCCAGTTATAGGCAGA-GGGGTCTGAGTGGGAAGAGACAGAGGTG-GTGGGAGCAG-----TGGGCTC s panTro1.chr19 41810956 269 + 82489036 AGAGAGAAAAGACTGTACTGCT----GAATTGTCCATGGGGCCCACTGAGACTCAAAGCTAAGGTGGGAAG--GTCTTCTAT--CTGATCAGGACCCAGGAGAGAAAGGTACTTTGCAGATGTTTCCTGGGAGCCTTGGGAAAAATGCCTCCCTCCCTCAACAAAGCAGGCGGGGCCTGCCCAGTTGCCCTGG---------CAGTAACCACATTGTGAGGTGGTTCCAGTTATAGGCAGA-GGGGTCTGAGTGGGAAGAGACAGAGGTG-GTGGGAGCAG-----TGGGCTC s mm5.chr11 20378221 272 - 121648857 ATAATGTATAAGTTTTATTGCC----AAATTGTCTCCAGGGCCCACTGAGACTCCAGGCTGAGGAGAGACT--GTCTCTTTTTGCTCCTCGAGACTCTGGAGGA--------CCTACAGGGGCTCCCCATGAGCCTTGGTAAGAATGGCCTCCACTTCCCATACTACAG--GGGGGCTGCCCAGTTGCCCTGGCAGTGGCCACAGTGGCCACATTGTGAGGTGGTCCGGGTAATAGGCAGGTGTGATCGGGGTGGGAGGAGACAGAAGCGTTTGGGTGCAG-----CGGCATC s canFam1.chr9 12569632 232 + 53642819 --AGAGAGAACACCCAGCCGACTCGGAAGCTGTCCCT-GGGCGCATGGAAACTCAAAGC--AGGTGGAAAGGTGTCTTCTAC--ATTCACAGGGCTT-GGAGAGAAAGGTAGTTTACAGACAATCCCTAGGCAACTTAGGAAAAC--CCTGCCTCCTCC-------------------------------------------------TCCCATTGTGAGGTGGTTCTGGTTATAGGGAGT-GGGGAGGGAGTGACAGGAAACAGAGGAG-GTGGGGGCAGCATCCTGGGCTC a score=-815.0 s hg17.chr17_random 46465 3 + 2618010 -AGC s mm5.chr11 20378493 3 - 121648857 -ATT s canFam1.chr9 12569864 3 + 53642819 CAT- a score=753.0 s hg17.chr17_random 46468 2 + 2618010 CT s panTro1.chr19 41904443 2 + 82489036 CT s mm5.chr11 20378496 2 - 121648857 TT s canFam1.chr9 12569867 2 + 53642819 CT a score=867.0 s hg17.chr17_random 46470 10 + 2618010 TTACTTCGCC s panTro1.chr19 41904445 10 + 82489036 TTACGTCGTC s mm5.chr11 20378498 10 - 121648857 GGGCTTTGCC a score=32402.0 s hg17.chr17_random 46480 392 + 2618010 GCCCGAGGGCGGGGAGACCGGCCCCGTACCCGAGGGGACGAGGGGCCCATGCCCAGTCAGGGAAGCCGAAGGCCTGGAGGGGCTTCCGGGAGCAGGGGCTGGAGTTCCTCTGCCAGGCAGGAGGCTGGCACCAGACACCCGGCAGAGGGAGGCGGCG-----------AGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGTGCTGTGTAGGGAatgctgcctctctgctcgggacgtggattcctttcccctcctcctcgcctggctacttctgacgcaggtcgtcaggactccgcttgggtgtcacccgtgcaggaagcctcccttagtcaagggccctcggcacccgccccatatgtgac s panTro1.chr19 41904455 402 + 82489036 ACCAGTGGGCGGGGAGACCAGCCTCGTACCC-ACTGGACAACCGGCCCATTCCGAGTCAGGGAAGCAGAAGGCCTGGAGGAGCTTCGGGGAGCAGGGGCTGGAGTTCCTCTGCCAGGCAGGAGGCTGACACCAGACACCGGGCAGAGGGAGGCGGCGCATGGACGGCGAGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGTGCTGTGTAGGGAAAgctgcttctctgctcgggacgtggattcctttcccctcctcctcgcctggctacttctgacgcgggtcgtcaggactccgcttgggtgtcacccgtccaggaagcctcccttaattaagggccctcggcacccaccccatatgtgat a score=136813.0 s hg17.chr17_random 46872 1481 + 2618010 tagcagccctcctgtgtatttcatcgcgtccccgttgtttatatcagctattccactcaccacccttctgggcaaccctttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagtaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACG-------------------ACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGACTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGgctgagggctctactgcgcattacctggaaaacttatttcactccacggccctaagaggtgggccttattatTAGCcacggccagggttagggtgaggccactcctccagggcagaatttcagggggtgcccacccccccgccctaaatcattcagcaatcaacataaattatagttcaacgcaatatatcttaTCTtgtgggccgcaagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtacagcaaagaaaataattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcatcactctttgttctattaccataatgatctctgttctattatgattaccttgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccagaagacaagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcagacccggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcatccggaggctccaacgtctgtctccctgtgatgctgtgcttcagtggtcacgctccttgttcactttcatgttcagcctgtacacctggctcctccttttaagttcttagaagacagcagtagcagaactagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcattggagatgactggcactccttaccctg s panTro1.chr19_random 55302653 1496 - 57627672 TAGCAGCCCTCCTGTGTATTTCATCGCGCCCCCGTTGTTTATATCAGCTATTCCACTCACCACCCTTCtgggcaaccctttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagcaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACGGCAGACCGTGATGAGCACGACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGACTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGGCTGAGGGCTCTACTGCGCATTACCTGGAAAACTTATTTCACTCCACGGCCCTAAGAGGTGGGCCTTATTATTAGCcacggccagggttagggtgaggcctctcctccagggcagaatttcagagggtgcccacccccccgccctaaatcattcagcaatcaacataaactatagttcaacgcaatatATCTTATCTtgtgggccgcaagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtatagtaaagaaaattattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcattactctttgttctattaccataatgatctctgttccattatgattaccctgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccaggagacaagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcaggccgggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcagccggaggctccaac----gtctccctgtgatgctgtgcttcagtgggcacgctccttcttcactttcatgttccgcctgtacacctggctcctccttttaagttcttagaagacagcagtagcacaattagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcactggagatgactggcactccttaccctg a score=57007.0 s hg17.chr17_random 48353 689 + 2618010 cccccttgccttgactacaataaatagcagcgcctccaggcactcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgc--acacacgcgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCAGCTACAACATAATCAGGATATTCACGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTAGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACACAATCTCCGCCGCCCTGTCTTGTCATCCCCAttctacagcccagcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgcgctgttaagtgtgaaatacacgtgggattttgacggcagtgggagcaaaaTTCTCCCAAttttttttttttttttttttttttttcagacggaggttccgctcttgttacccagcctg-gagtccaatggcgcgatctaggctctctgcaa-cctccgcctcccgggttcaagcgattcccctgcctcagcctcccgagcagctgggactacaggcatgtg-ccaccacgcccggctaactttgtatttt s panTro1.chr19 40636101 683 - 82489036 cccccttgccttgactacaataaatagcagcgcctccaggcattcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgcgcacacacacgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCGGCTACAACATAATCAAGATATTCATGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTGGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACCCAATCTCCGCCGCCCTGTCTTGTCATCCCCATTCTACAGCCCAgcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctg-taagtgtgaaatacacatgggatttTCACGGCAGTGGGAGCAAAATTCCCCCAAttttttttttttttttt----------aaacggaggtttccctcttgttacccagcctgagagtcaaatggcgcgatttaagctctccgcaaccctccccctcccgggttcaaccgattcccctgccccacccctccgagcagctggaaatacaggcttgggcccaccccgcccggctaaagttgtatttt a score=75708.0 s hg17.chr17_random 49445 830 + 2618010 GCGTCAGAAGTAGCCGGGCGAGGAGGAGGGGGAAAGGAATCCACGTCCCGAGCAGAGAGGCAGCGTT-CCCTACACAGCACAGGACACGGTCCGCGCACAGAAGCCGCAGGAGACGCAGGCACAGGGGCTGGGGAGAATCCTTGCTGGGCCCTCGCCGCCTCCCTCTGCCGGGTGTCTGGTGCCAGCCTCCTGCCTGGCAGAGGAACTCCAGCCCCTGCTCCCGGAAGCCCCTCCAGGCCTTCGGCTTCCCTGACTGGGCATGGGCCCCTCGTCCCCTCGTCCCCTCGGGTACGGGGCCGGTCTCCCCGCCCGCGGGCGGCGAAGTAAAGGCCCAGCGCAGCCCGCGCTCCTGCCCTGGGGCCTCGTCTTTCTCCAGGAAAACGTGGACCGCTCTCCGCCGACAGGTCTCTTCCACAGACCCCTGTCGCCTTCGCCCCCGGTCTCTTCCGGTTCTGTCTTTTCGCTGGCTCGATACGAACAAGGAAGTCGCCCCCAGCGGAGCCCCG-CTCCCCCAGGCAGAGGCGGCCCCGGGGGCGGAGTCAACGGCGGAGGCCACGCCCTCTGTGAAAGGGCGGGGCATGCAAATTCGAAATGAAAGCCCGGGAACGCCGGAAGAAGCACGGGTGTAAGATTTCCCTTTTCAAAGGCGGAGAATAAGAAATCAGCCCGAGAGTGTAAGGGCGTCAATAGCGCTGTGGACGAGACAGAGGGAATGGGGCAAGGAGCGAGGCTGGGGCTCTCACCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCGAAGGCGAGCGCatcgcttctcggccttttggctaagatcaag s panTro1.chr19_random 2478272 822 + 57627672 GCGTCAGAAGTAGCCAGGCGAGGAGGAGGGG-AAGGGAATCCACGTCCCGAGCAGGGAGGCAGCTTTTCCCTACACAGCACAGGACACGGTCCGCGCACAGAAGCCGCAGGAGACGCAGGCACAGGGGCTGGGGAGAATCCTTGCTGGGCCCTCGCCGCCTCCCTCTGCTGGGTGTCTGGTGCCAGCCTCCTGCCTGGCCGAGGAACTCCAGCCCCTGCTCCCGGAAGCCCCTCCAGGCCTTCGGCTTCCCTGACTGGGCATGGGCCCCTCGTCCCCTCG--------GGTACGGGGCCGGTCTCCCCGCCCGCGGGCGGCGAAGTAAAGGCCCAGCGCAGCCCGCGCTCCTGCCCTGGGGCCTCGTCTTTCTCCAGGAAAACGTGGACCGCTCTCCGCCGACAGGTCTCTTCCACAGACCCCTGTCGCCTTCGCCCCCAGTCTCTTCCGGTTCTGTCTTTTCGCTGGCTCGATACGAACAAGGAAGTCGCCCCCAGCGGAGCCCCGGCTCCCCCAGGCAGAGGCGGCCCCGGGGGCGGAGTCAACGGCGGAGGCCACGCCCTCCGTGAAAGGGCGGGGCATGCAAATTCGAAATGAAAGCCCGGGAACGCCGGAAGAAGCACGGGTGTAAGATTTCCCTTTTCAAAGGCGGAGAATAAGAAATCAGCCCGAGAGTGTAAGGGCGTCAATAGCGCTGTGGACGAGACAGAGGGAATGGGGCAAGGAGCGAGGCTGGGGCTCTCACCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCGAAGGCGACCGCatcgcttctcggcc-tttggctaagatcaag a score=14439.0 s hg17.chr17_random 50275 179 + 2618010 tgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaa-tatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTT s panTro1.chr19 40585796 180 - 82489036 tgtagtatctgttcttatcagtttaatatctgatacgtcctctatcagaggacaattatattagatagatttttggagcagggagatgaaataggagcttgctctgtccactccacgcgtcgacctggtattgcagtacctccaggaatggggctccCTCTCCTGGGCTACAACCTGTTT a score=28029.0 s hg17.chr17_random 50454 331 + 2618010 CCTAAAAGTAGAGGGAGGTAAGAGACGGTAGCACCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACTGCTTCCCTGAAGTACCTT-----GAGGTTCCTGATGTGC-------GGGCGGTAGACGGTAGGCTTATGCGGCACGCTTTCGTTTCCACCGTGGCTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGACCCACCCGGAGTT---CTtctttctcctgtctctctctctctctctctctctttctctctctctct s panTro1.chr19_random 55519221 346 - 57627672 CCTAAAAGCAGAGAGAGGTAAGAGACAGTAGCATCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACCGCTTCCCTGAAGTACCAGTGAGGGAGGTTCCTGATCTGCAGGCGGTGGGCGGTAGACGGTAGGCTTATGCGGCACGCTTCCGTTTCCACCGTGACTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGATCCACCCGGAATTGAACTtctttctcctctctctctctctctctctctctctctctctctctctct a score=37659.0 s hg17.chr17_random 50792 488 + 2618010 GGTGACTGGAATGGCTGATATATACGACTGGGGCGCGATGAAATACACTCGATGGCTGCTACTCACATATGGGGCGGGTGCCGAGGGCCCTTGACTaagggaggcttcctgcacgggtgacacccaagcggagtcctgacgacctgcgtcagaagtagccaggcgaggaggaggggaaaggaatccacgtcccgagcagagaggcagcgtTCCCTACACAGCACAGGACACGGTCCGCGCACAGAAGCCGCAGGAGACGCAGGCACAGGGGCTGGGGAGAATCCTTGCTGGGCCCT-----------CGCCGCCTCCCTCTGCCGGGTGTCTGGTGCCAGCCTCCTGCCTGGCAGAGGAACTCCAGCCCCTGCTCCCGGAAGCCCCTCCAGGCCTTCGGCTTCCCTGACTGGGCATGGGCCCCTCGTCCCCTCGTCCCCTCGGGTACGGGGCCGGTCTCCCCGCCCGCGGGCGGCGAAGTAAAGGCCCAGCGCAGCCCG s panTro1.chr19 40584119 489 - 82489036 ggtgagtggagtagttgatataaacaac-ggggtgcgatgaaatacacaggagggctgctaatcacatatggggtgggtgccgagggcccttaattaagggaggcttcctggacgggtgacacccaagcggagtcctgacgacccgcgtcagaagtagccaggcgaggaggaggggaaaggaatccacgtcccgagcagagaagcagcTTTCCCTACACAGCACAGGACACGGTCCGCGCACAGAAGCCGCAGGAGACGCAGGCACAGGGGCTGGGGAGAATCCTTGCTGGGCCCTCGCCGTCCATGCGCCGCCTCCCTCTGCCCGGTGTCTGGTGTCAGCCTCCTGCCTGGCAGAGGAACTCCAGCCCCTGCTCCCCGAAGCTCCTCCAGGCCTTCTGCTTCCCTGACTCGGAATGGGCCGGTTGTCCAGT---------GGGTACGAGGCTGGTCTCCCCGCCCACTGGTGACGACGTAAAGATCCAGCGCAGCCTG a score=17198.0 s hg17.chr17_random 51295 281 + 2618010 GCCTCGTCTTTCTCCAGGAAAACGTGGACCGCTCTCCGCCGACAGGTCTCTTCCACAGACC---CCTGTCGCCTTCGCCCCCGGTCTCTTCCGGTTCTGTCTTTTCGCTGGCTCGATACGAACAAGGAAGTCGCCCCCAGCGGAGCCCCGGCTCCCCCAGGCAGAGGCGGCCCCGGGGGCGGAGTCAACGGCGGAGGCCACGCCCTCTGTGAAAGGGC-GGGGCATGCAAATTCGAAATGAAAGCCCGGGAACGCCGGAAGAAGCACGGGTGTAAGATTTCCCTT s panTro1.chr19 40584633 276 - 82489036 GACTCGTCTTTCTCCAGGAAAACAGGGACCGCTCTCCGCCTACAGGTCTCTTCCACAGACCTATCTTGT---TTTCATCCCCTGTCTCTTTTGGTTCAGTCTTTTCGCT-----CATACAAACAAGGAAGTCGCCCCTAGCCCAGCCGCGGCT-CCTTAGCTGGAGGCGGGCCCGGGCGTGGAGTCAACCGCGGTGGCCACGCCTCCTGGGAAAGGGCAGGGGCATGCAAATTCGAAATGAAAGCCCGGAAACCCCGGAACTAGAACTGGTGTAAGATTTCTCTT a score=7818.0 s hg17.chr17_random 51576 83 + 2618010 TTCAAAGGCAGAGAATAAGAAATCAGCCCGAGAGTGTAAGGGCGTCAATAGCGCTGTGGACGAGACAGAGGGAATGGGGCAAG s panTro1.chr19_random 2478904 83 + 57627672 TTCAAAGGCGGAGAATAAGAAATCAGCCCGAGAGTGTAAGGGCGTCAATAGCGCTGTGGACGAGACAGAGGGAATGGGGCAAG a score=87340.0 s hg17.chr17_random 51659 1112 + 2618010 GAGCGAGGCTGGGGCTCTCACCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCGAAGGCGAGCGCatcgcttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGTAGAGGGAGGTAAGAGACGGTAGCACCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACTGCTTCCCTGAAGTACCTT-----GAGGTTCCTGATGTGC-------GGGCGGTAGACGGTAGGCTTATGCGGCACGCTGTCGTTTCCACCGTGGCTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGACCCACCCGGAGTT---CTTCTTTCTCCTGtctctctctctctctctctctctctctctctctttctctctctctctctctgtctctccgtctctctgtgtctgtctctgtctctctgtctctctctctgtctctctctctctctctctctctctctcctctctctgtctctctctctctttccctctctctctctctTCCCCCCCCCCCGCCTCTCCCTCG----CTCTTTTGGTTTCCCCCACCCCCTCCCaagttctggggtacatgtgcaggacgtgcaggtttggaacataggtacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcatgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcgctgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgc s panTro1.chr19_random 55518934 1034 - 57627672 GAGCGAGGCTGGGGCTCTCACCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCAAAGGCGACCGCatcgcttttcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGCAGAGAGAGGTAAGAGACAGTAGCATCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACCGCTTCCCTGAAGTACCAGTGAGGGAGGTTCCTGATCTGCAGGCGGTGGGCGGTAGACGGTAGGCTTATGCGGCACGCTTCCGTTTCCACCGTGACTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGATCCACCCGGAATTGAACTtctttctcctctctctctctctctctctctctctctctctctctctctttctctctctctcggtctc---------------------------------------------------------------------------------tttctctctctctT----------------CACCCCCCCCCCCGCCTCTCCTCCGTTCTCTCTTTTGGTTTCCCCCACCCCCTCCCaagttctggggtacatgtgcaggacgtgcaggtttggaacatagatacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcacgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcactgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgc a score=84279.0 s hg17.chr17_random 52872 1067 + 2618010 ctggataaagaaagtgtggcacgtatacagcatggaattactacgcagccataaaaaaggatgagttcatgacctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagcgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcatgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtacctatgttccaaacctgcacgtcctgcacatgtaccccagaacttGGGAGGGGGTGGGGGAAACCAAAAGAG----CGAGGGAGAGGCGGGGGGGGGGgaaagagagggagagagggaaagagagagagagacaggagagaggagagagagagagagagagagaga--gagagagagagacagagagagagacagagagacagagacagacacagagagacggagagacagagagagagagagagagagagagagacaggagaaagaAG---AACTCCGGGTGGGTCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCATGGCCTTCCCAAAGCGCAGTAGCCACGGTGGAAACGAAAGCGTGCCGCATAAGCCTACCGTCTACCGCCC-------GCACATCAGGAACCTC-----AAGGTACTTCAGGGAAGCAGTTAAGTCAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGGTGCTACCGTCTCTTACCTCCCTCTACTTTTAGGAAACACGTTGTATCCCCGGAGGGggtgcaccgttcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagctcctattccatctccctgctccaaaaatccatttaatatattgtcctcggatagaggacgtatcagatattaaactgataagaacagatactaca s panTro1.chr19_random 2107627 1003 + 57627672 ctggataaagaaagtgtggcacgtatacaccatggaattactacgcagccataaaaaaggatgagttcatgtcctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagtgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcgtgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtatctatgttccaaacctgcacgtcctgcacatgtaccccagaacttGGGAGGGGGTGGGGGAAACCAAAAGAGAGAACGGAGGAGAGGCGGGGGGGGGGGTGA-----------------------------------------------agagagagagaaagagaccgagagagagagaaagagagagaga--------------------------------------gagagagagagagagagagagagagagaggagaaagaAGTTCAATTCCGGGTGGATCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCGTGGCCTTCCCAAAGCGCAGTAGTCACGGTGGAAACGGAAGCGTGCCGCATAAGCCTACCGTCTACCGCCCACCGCCTGCAGATCAGGAACCTCCCTCACTGGTACTTCAGGGAAGCGGTTAAGTCAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGATGCTACTGTCTCTTACCTCTCTCTGCTTTTAGGAAACACGTTGTATCCCCGGAGGGggtgcaccgttcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagctcctattccatctccctgctccaaaaatccatttaatatattgtcctcggatagaggacgtatcagatattaaactgataagaacagatactaca a score=83534.0 s hg17.chr17_random 53939 914 + 2618010 cttgatcttagccaaaaggccgagaagcgatGCGCTCGCCTTCGCGCCCGCCGTCACCGTCCCACTCTCATCCACATTCAAGTCGCGGTGAGAGCCCCAGCCTCGCTCCTTGCCCCATTCCCTCTGTCTCGTCCACAGCGCTATTGACGCCCTTACACTCTCGGGCTGATTTCTTATTCTCTGCCTTTGAAAAGGGAAATCTTACACCCGTGCTTCTTCCGGCGTTCCCGGGCTTTCATTTCGAATTTGCATGCCCCGCCCTTTCACAGAGGGCGTGGCCTCCGCCGTTGACTCCGCCCCCGGGGCCGCCTCTGCCTGGGGGAGCCGGGGCTCCGCTGGGGGCGACTTCCTTGTTCGTATCGAGCCAGCGAAAAGACAGAACCGGAAGAGACCGGGGGCGAAGGCGACAGGGGTCTGTGGAAGAGACCTGTCGGCGGAGAGCGGTCCACGTTTTCCTGGAGAAAGACGAGGCTCCAGGGCAGGAGCGCGGGCTGCGCTGGGCCTTTACTTCGCCGCCCGCGGGCGGGGAGACCGGCCCCGTACCCGAGGGGACGAGGGGACGAGGGGCCCATGCCCAGTCAGGGAAGCCGAAGGCCTGGAGGGGCTTCCGGGAGCAGGGGCTGGAGTTCCTCTGCCAGGCAGGAGGCTGGCACCAGACACCCGGCAGAGGGAGGCGGCGAGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGTGCTGTGTAGGG-Aacgctgcctctctgctcgggacgtggattcctttcccctcctcctcgcccggctacttctgacgcaggtcgtcaggactccgcttgggtgtcacccgtgcaggaagcctccc-ttagtcaagggccctcggcacccgccccatatgtgac s panTro1.chr19_random 55148578 907 - 57627672 cttgatcttagccaaa-ggccgagaagcgatGCGGTCGCCTTCGCGCCCGCCGTCACCGTCCCACTCTCATCCACATTCAAGTCGCGGTGAGAGCCCCAGCCTCGCTCCTTGCCCCATTCCCTCTGTCTCGTCCACAGCGCTATTGACGCCCTTACACTCTCGGGCTGATTTCTTATTCTCCGCCTTTGAAAAGGGAAATCTTACACCCGTGCTTCTTCCGGCGTTCCCGGGCTTTCATTTCGAATTTGCATGCCCCGCCCTTTCACGGAGGGCGTGGCCTCCGCCGTTGACTCCGCCCCCGGGGCCGCCTCTGCCTGGGGGAGCCGGGGCTCCGCTGGGGGCGACTTCCTTGTTCGTATCGAGCCAGCGAAAAGACAGAACCGGAAGAGACTGGGGGCGAAGGCGACAGGGGTCTGTGGAAGAGACCTGTCGGCGGAGAGCGGTCCACGTTTTCCTGGAGAAAGACGAGGCCCCAGGGCAGGAGCGCGGGCTGCGCTGGGCCTTTACTTCGCCGCCCGCGGGCGGGGAGACCGGCCCCGTACC--------CGAGGGGACGAGGGGCCCATGCCCAGTCAGGGAAGCCGAAGGCCTGGAGGGGCTTCCGGGAGCAGGGGCTGGAGTTCCTCGGCCAGGCAGGAGGCTGGCACCAGACACCCAGCAGAGGGAGGCGGCGAGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGTGCTGTGTAGGGAAAAGCTGCCTCCCTGCTCGGGACGTGGATTCCCTTCCCCTCCTCCTCGCCTGGCTACTTCTGACGCAGGTCGTCAGGACTCCGCTTGGGTGTCACGCGTCCAGGAAGCCTCCCTTTAGTCAAGGGCCCTCGGCACCCGCCCCGTATGTGAC a score=135904.0 s hg17.chr17_random 54853 1482 + 2618010 tagcagccctcctgtgtatttcatcgcgcccccgttgtttatatcagccattccactcaccacccttctgggcaaccctttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagtaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACG-------------------ACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGGCTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGgctgagggctctactgcgcattacctggaaaacttatttcactccacggccctaagaggtgggccttattatTAGCcacggccagggttagggtgaggccactcctccagggcagaatttcagggggtgcccacccccccgccctaaatcattcagcaatcaacataaattatagttcaacgcaatgtatcttaTCTtgtgggccgcaagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtacagcgaagaaaataattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcatcactctttgttctattaccataatgatctctgttctattatgattaccttgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccagaagacgagagtgtgagccctcattcacgccccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcagacccggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcatccggaggctccaacgtctgtctccctgtgatgctgtgcttcagtggtcacgctccttgttcactttcatgttcagcctgtacacctggctcctccttttaagttcttagaagacagcagtagcagaactagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcattggagatgactggcactccttaccctg s panTro1.chr19_random 55302653 1496 - 57627672 TAGCAGCCCTCCTGTGTATTTCATCGCGCCCCCGTTGTTTATATCAGCTATTCCACTCACCACCCTTCtgggcaaccctttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagcaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACGGCAGACCGTGATGAGCACGACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGACTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGGCTGAGGGCTCTACTGCGCATTACCTGGAAAACTTATTTCACTCCACGGCCCTAAGAGGTGGGCCTTATTATTAGCcacggccagggttagggtgaggcctctcctccagggcagaatttcagagggtgcccacccccccgccctaaatcattcagcaatcaacataaactatagttcaacgcaatatATCTTATCTtgtgggccgcaagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtatagtaaagaaaattattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcattactctttgttctattaccataatgatctctgttccattatgattaccctgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccaggagacaagagtgtgagccctcattcacg-cccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcaggccgggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcagccggaggctccaac----gtctccctgtgatgctgtgcttcagtgggcacgctccttcttcactttcatgttccgcctgtacacctggctcctccttttaagttcttagaagacagcagtagcacaattagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcactggagatgactggcactccttaccctg a score=57619.0 s hg17.chr17_random 56335 686 + 2618010 cccccttgccttgactacaataaatagcagcgcctccaggcactcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgc--acacacgcgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCAGCTACAACATAATCAGGATATTCACGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTAGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACACAATCTCCGCCGCCCTGTCTTGTCATCCCCAttctacagcccagcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacgtgggattttgacggcagtgggagcaaaaTTCTCCCAAttttttttttttttttttttttttcagacggaggttccgctcttgttacccagcctg-gagtccaatggcgcgatctaggctctctgcaa-cctccgcctcccgggttcaagcgattcccctgcctcagcctcccgagcagctgggactacaggcatgtg-ccaccacgcccggctaactttgtatttt s panTro1.chr19 40636101 683 - 82489036 cccccttgccttgactacaataaatagcagcgcctccaggcattcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgcgcacacacacgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCGGCTACAACATAATCAAGATATTCATGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTGGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACCCAATCTCCGCCGCCCTGTCTTGTCATCCCCATTCTACAGCCCAgcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacatgggatttTCACGGCAGTGGGAGCAAAATTCCCCCAAttttttttttttttttt--------aaacggaggtttccctcttgttacccagcctgagagtcaaatggcgcgatttaagctctccgcaaccctccccctcccgggttcaaccgattcccctgccccacccctccgagcagctggaaatacaggcttgggcccaccccgcccggctaaagttgtatttt a score=86790.0 s hg17.chr17_random 57729 1099 + 2618010 ctcgaatgcccatgaatgataggctggataaagaaagtgtggcacgtatacagcatggaattactacgcagccataaaaaaggatgagttcatgacctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagcgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcatgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtacctatgttccaaacctgcacgtcctgcacatgtaccccagaacttGGGAGGGGGTGGGGGAAACCAAAAGAG----CGAGGGAGAGGCGGGGGGGGGGAagagagagagagagggaaagagagagagagacagagagaggagagagagagagagagagagagagagagacagagagagagacagagagacagagacagacacagagagacggagagacagagagagagagagagaaagagagagagagagagagagagagagacaggagaaagaAG---AACTCCGGGTGGGTCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCGTGGCCTTCCCAAAGCGCAGTAGCCACGGTGGAAACGAAAGCGTGCCGCATAAGCCTACCGTCTACCGCCC-------GCACATCAGGAACCTC-----AAGGTACTTCAGGGAAGCAGTTAAGTCAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGGTGCTACCGTCTCTTACCTCCCTCTACTTTTAGGAAACACGTTGTATCCCCGGAGGGggtgcaccgttcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagctcctattccatctccctgctccaaaaatccatttaatatattgtcctcggatagaggacgtatcagatattaaactgataagaacagatactaca s panTro1.chr19_random 2107604 1026 + 57627672 ctcgaatgcccatgaatgataggctggataaagaaagtgtggcacgtatacaccatggaattactacgcagccataaaaaaggatgagttcatgtcctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagtgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcgtgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtatctatgttccaaacctgcacgtcctgcacatgtaccccagaacttGGGAGGGGGTGGGGGAAACCAAAAGAGAGAACGGAGGAGAGGCGGGGGGGGGGGTGA--------------------------------------------------agagagagagaaagagaccgagagagaga------------------------------------------gaaagagagagagagagagagagagagagagagagagagagaggagaaagaAGTTCAATTCCGGGTGGATCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCGTGGCCTTCCCAAAGCGCAGTAGTCACGGTGGAAACGGAAGCGTGCCGCATAAGCCTACCGTCTACCGCCCACCGCCTGCAGATCAGGAACCTCCCTCACTGGTACTTCAGGGAAGCGGTTAAGTCAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGATGCTACTGTCTCTTACCTCTCTCTGCTTTTAGGAAACACGTTGTATCCCCGGAGGGggtgcaccgttcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagctcctattccatctccctgctccaaaaatccatttaatatattgtcctcggatagaggacgtatcagatattaaactgataagaacagatactaca a score=83918.0 s hg17.chr17_random 58828 914 + 2618010 cttgatcttagccaaaaggccgagaagcgatGCGCTCGCCTTCGCGCCCGCCGTCACCGTCCCACTCTCATCCACATTCAAGTCGCGGTGAGAGCCCCAGCCTCGCTCCTTGCCCCATTCCCTCTGTCTCGTCCACAGCGCTATTGACGCCCTTACACTCTCGGGCTGATTTCTTATTCTCCGCCTTTGAAAAGGGAAATCTTACACCCGTGCTTCTTCCGGCGTTCCCGGGCTTTCATTTCGAATTTGCATGCCCCGCCCTTTCACAGAGGGCGTGGCCTCCGCCGTTGACTCCGCCCCCGGGGCCGCCTCTGCCTGGGGGAGCCGGGGCTCCGCTGGGGGCGACTTCCTTGTTCGTATCGAGCCAGCGAAAAGACAGAACCGGAAGAGACCGGGGGCGAAGGCGACAGGGGTCTGTGGAAGAGACCTGTCGGCGGAGAGCGGTCCACGTTTTCCTGGAGAAAGACGAGGCCCCAGGGCAGGAGCGCGGGCTGCGCTGGGCCTTTACTTCGCCGCCCGCGGGCGGGGAGACCGGCCCCGTACCCGAGGGGACGAGGGGACGAGGGGCCCATGCCCAGTCAGGGAAGCCGAAGGCCTGGAGGGGCTTCCGGGAGCAGGGGCTGGAGTTCCTCTGCCAGGCAGGAGGCTGGCACCAGACACCCGGCAGAGGGAGGCGGCGAGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGTGCTGTGTAGGG-Aacgctgcctctctgctcgggacgtggattcctttcccctcctcctcgcctggctacttctgacgcaggtcgtcaggactccgcttgggtgtcacccgtgcaggaagcctccc-ttagtcaagggccctcggcacccgccccatatgtgac s panTro1.chr19_random 55148578 907 - 57627672 cttgatcttagccaaa-ggccgagaagcgatGCGGTCGCCTTCGCGCCCGCCGTCACCGTCCCACTCTCATCCACATTCAAGTCGCGGTGAGAGCCCCAGCCTCGCTCCTTGCCCCATTCCCTCTGTCTCGTCCACAGCGCTATTGACGCCCTTACACTCTCGGGCTGATTTCTTATTCTCCGCCTTTGAAAAGGGAAATCTTACACCCGTGCTTCTTCCGGCGTTCCCGGGCTTTCATTTCGAATTTGCATGCCCCGCCCTTTCACGGAGGGCGTGGCCTCCGCCGTTGACTCCGCCCCCGGGGCCGCCTCTGCCTGGGGGAGCCGGGGCTCCGCTGGGGGCGACTTCCTTGTTCGTATCGAGCCAGCGAAAAGACAGAACCGGAAGAGACTGGGGGCGAAGGCGACAGGGGTCTGTGGAAGAGACCTGTCGGCGGAGAGCGGTCCACGTTTTCCTGGAGAAAGACGAGGCCCCAGGGCAGGAGCGCGGGCTGCGCTGGGCCTTTACTTCGCCGCCCGCGGGCGGGGAGACCGGCCCCGTACC--------CGAGGGGACGAGGGGCCCATGCCCAGTCAGGGAAGCCGAAGGCCTGGAGGGGCTTCCGGGAGCAGGGGCTGGAGTTCCTCGGCCAGGCAGGAGGCTGGCACCAGACACCCAGCAGAGGGAGGCGGCGAGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGTGCTGTGTAGGGAAAAGCTGCCTCCCTGCTCGGGACGTGGATTCCCTTCCCCTCCTCCTCGCCTGGCTACTTCTGACGCAGGTCGTCAGGACTCCGCTTGGGTGTCACGCGTCCAGGAAGCCTCCCTTTAGTCAAGGGCCCTCGGCACCCGCCCCGTATGTGAC a score=61810.0 s hg17.chr17_random 59742 666 + 2618010 tagcagccctcctgtgtatttcatcgcgcccccgttgtttatatcagccattccactcaccacccttctgggcaaccctttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagtaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACG-------------------ACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAAGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGGCTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGgctgagggctctactgcgcattacctggaaaacttatttcactccacggccctaagaggtgggccttattatTAGCcacggccagggttagggtgaggccactcctccagggcagaatttcagggggtgcccaaccccccgccctaaatcattcagcaatcaacataaattatagttcaacgcaatgtatcttaTCTtgtgggccgc s panTro1.chr19_random 55302653 685 - 57627672 TAGCAGCCCTCCTGTGTATTTCATCGCGCCCCCGTTGTTTATATCAGCTATTCCACTCACCACCCTTCtgggcaaccctttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagcaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACGGCAGACCGTGATGAGCACGACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGACTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGGCTGAGGGCTCTACTGCGCATTACCTGGAAAACTTATTTCACTCCACGGCCCTAAGAGGTGGGCCTTATTATTAGCcacggccagggttagggtgaggcctctcctccagggcagaatttcagagggtgcccacccccccgccctaaatcattcagcaatcaacataaactatagttcaacgcaatatATCTTATCTtgtgggccgc a score=126485.0 s hg17.chr17_random 60408 1428 + 2618010 aagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtacagcgaagaaaataattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcatcactctttgttctattaccataatgatctctgttctattatgattaccttgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccagaagacgagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcg-tggccccagtgcctgggaaggcacccgttacttagcagacccggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcatccggaggctccaacgtctgtctccctgtgatgctgtgcttcagtggtcacgctccttgttcactttcatgttcagcctgtacacctggctcctccttttaagttcttagaagacagcagtagcagaactagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcattggagatgactggcactccttaccctgcccccttgccttgactacaataaatagcagcgcctccaggcactcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgc--acacacgcgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCAGCTACAACATAATCAGGATATTCACGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTAGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACACAATCTCCGCCGCCCTGTCTTGTCATCCCCAttctacagcccagcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacgtgggattttgacggcagtgggagcaaaaTTCTCCCAAttttttttttttttttttttttttcagacggaggttccgctcttgttacccagcctg-gagtccaatggcgcgatctaggctctctgcaa-cctccgcctcccgggttcaagcgat s panTro1.chr19 40635290 1421 - 82489036 aagccatccagatgcccaggcaagagcctgaaggcacaagctgttccagtatagtaaagaaaattattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcattactctttgttctattaccataatgatctctgttccattatgattaccctgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccaggagacaagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcaggccgggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcagccggaggctccaacgtct----ccctgtgatgctgtgcttcagtgggcacgctccttcttcactttcatgttccgcctgtacacctggctcctccttttaagttcttagaagacagcagtagcacaattagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcactggagatgactggcactccttaccctgcccccttgccttgactacaataaatagcagcgcctccaggcattcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgcgcacacacacgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCGGCTACAACATAATCAAGATATTCATGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTGGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACCCAATCTCCGCCGCCCTGTCTTGTCATCCCCATTCTACAGCCCAgcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacatgggatttTCACGGCAGTGGGAGCAAAATTCCCCCAAttttttttttttttttt--------aaacggaggtttccctcttgttacccagcctgagagtcaaatggcgcgatttaagctctccgcaaccctccccctcccgggttcaaccgat a score=65692.0 s hg17.chr17_random 61836 713 + 2618010 tcccctgcctcagcctcccgagcagctgggactacaggcatgtgccaccacgcccggctaactttgtatttttagtacagatggggtttctccacgttgctcaggctggtctccaactcccgacctccggtgatctgcccagctgccgcctcccaaagtgttgcttgcgattacaggcttgagccaccgcTCACCCTGGCttttttttttttttttttc-----cagacaaactctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcagcctctacctcccgggttccagcgattctcctgcctcagcctcctgggtagctgggattacaggcgcaggccaccacgcccggctaatttttgtatttttagggggtttcgccatgtcggccaggctggtctcgagctcctgacctcaggcgatccgcccgcctcggcctcccaaagcgctgggattacaggcgtaagccaccgcgccgggctCtttcattctgtctttattttctgagatagagtctcgctcggacgctcaggttggactgcaacggcgtgatctcggctcgctgaaacttccgcctcccgggttcaagcgattctcctgtctcagcctcccgagtagctgggattattgacgggcagcaccacgcccggctactttttgtggtttttgtaTCTTCTGTCTTCTGCTCTTTAGTACCGCAT s panTro1.chr19 40645182 718 - 82489036 tcccctgcctcagcctcccgagcagctgggactacgggcatgtgccaccacgcccggctaagtttgtatttttagtacacatggggtttctccatgttggtcaggctggtctccaactcccgacctccggtgatccgcccagctgccgcctcccaaagtgttgcttgcgattacaggcttgagccaccgcTCACCCTGGCttttttttttttttttttttttggcagacaaactcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcagcctctacctcccgggttccagcgattctcctgcctcagcctcctgggtagctgggattacaggcgtaggccaccacgcccggctcatttttgtatttttagggggtttcgccatgtcggccaggctggtctccagctcctgacctcaggcgatccgcccgcctcggcctcccaaagcgctgggattacaggcgtaagccaccgcgccgggctCTTTCATTCTGTCtttattttctgagatagagtctcgctcggacgctcaggttggactgcaatggcgtgatctcggctcgctgaaacttccgcctcccgggttcaagcgattctcctgtctcagcctcccgagtagctgggattattgacgggcagcaccacgcccggctaccttttgtggtttttgtaTCTTCTGTCTTCTGCTCTTGAGTACCGCAT a score=48976.0 s hg17.chr17_random 62549 395 + 2618010 AGAGCCGCAGAAGACTAGCGAGTCGAACAAACGGCCCCTCTTGCAGCAGTTGTTGATCACGGGGCTGCCCCCCGGTACTCATCCTGTGTCTCTCGTCCAAATCCCCGCTCCTCCTCAGCTATCACCTCTGCCGATGCTGGTGGTTTCCCTGGGTACCGGGAACCAAACTCTCATTCCCCAGGGGCCTAAGCCCCCCGTGGCCAGGCCCTTCTCAAGTCAGGGTT------CCTGCACATTCACAGTTACGGGTGGCCCTGGGAGTAACACCTGGCACCCAAACAGGTCACC-AGAGTCCACACATAGTCCACCTGCCCTCCCTGCGTAAGATCAGCTC--TTCCTCCTCCCGACGATAGATCAGGGTCAATGATCCCTGCCAAGATGGCGACTGCTCCAGCCTG s panTro1.chr19 40645900 394 - 82489036 AGAGCCACAGAAGACTAGCGAGTCGAACAAACGGCCCCTGTTGCAGCAGTTGTTGATCACGGGGCTGCCCCC-GGTACTCATCCTGTGTCTCTCGTCCAAATCCCCGCTCCTCCCCAGCTATCACCTCTGCCGATGCTGGTGGTTTCCCTGGGTACCGGGAACCAAACTCTCATTCCCCAGGGGCCTAAGCCCCCCGTGGCCAGGCCCTTCTCAAGTCAGGGTT------CCTGCACATTCACAGTTACGGGTGGCCCTGGGAGTAACACCTGGCACCCAAACAGATCACC-AGAGTCCACGCATAGTCCACCTGCCCTCCCTGCGTAAGATCAGCTC--TTCCTCCTCCCGGCGATAGATCAGGGTCAATGATCCCTGCCAAGATGGCGACTGCTCCAGCCTG s canFam1.chr2 13222480 364 - 87725193 AGAACCTGGGAGGAAT-GTTAGTGGGACAAACTAGATCCCCCGCCACTGCAGACTGGCTCAGGGCTGCAGCT-GATAATCATC--ATGTCTCTTCTCC---TCTATGATTCCACCCTACTGTCA-----GCTGGCCTCAGTGGCTCATCT-GGTGGCATGATCCGGCCCCTCCTCCTCGAGGAGCCTGAGCCCCTGGTCTCCAGGACCTTCTCAGGCCAGAGTTGTATTATCTGGCCATTTATAGTCACAGCTGTACCAAGGAGTATCACGAAACACTCCAATAGATCACCTGGAGTCGA------------TTATCCTAATTGTGTAACAGCAGCTTTATTCCTTTT-------ATA-AGCAGGGTCAACCCCTCCCCCT-------CGTCCTCCCCAGCCTG a score=87871.0 s hg17.chr17_random 62944 1010 + 2618010 CTGGTCCAACCTGTCCAGCCACAGCTGTTGCTCGAAGGCTTGAAGTTCAATGGGACCCTCTCCCGCTTTCTACAAACTGGttcctttatttttatgtttatttatttgggacggggtctggctctgtcacccaggctggagtgcagtggtgcaatcactgctcactgcagcatccacctcccagcgtccacccatcctcctggcctcagcctccggaacagctggggtacaggtacgccccagcccgaacaggttttCACTAGGTTGCCTGGGCTCTttctttctttgtctgtgtttgtttgttggttggttggttggttggttggtttttgtttgtttgtttcgagacggggctccggctctgccgccgggggctgcagtgcaatggcgcgatctcacctcactgcggccttctgggctcaagcgatcctcccacTGTGCCCGGCCTGAAGACAGCCTTTAGAGAAAGAAGCAGGGGgagttcttccgaggacagacaagatttctggagtttggaaagggtgagagactgggtcagcgaaaggaacattccggtctttatgttgggatgcaacgt---atagatacagggatgaGACCCAAAAGAGCCGGCAGAGGTTTGTCATCGTGCTCGCAAGGCAACTGCCGGTGGCTGATCCCGTAAAGGATACACATACCTAGAGCGGAGCCTAAAGATGCATCCAGCATGACGGGTGGAGCCACGATGCTTGGACTCGAGCTCTGCTCCTGTGCGTTCCGTGATCAATGGCTTATACTACCTGCACCTCAGTTTTTCCCGGGCAAAAAAGGAAGCTTGCTGCCGGTGCGTTGGCACCTGCCTTAAAGTGCCAGCTACTCAGCGGGCTGAAGAGGAAGAAGTtcctactaggaagacacgtggacacgtatgtttactgcagcactatttacaatagcaaa---gacttggaaccaactcgaatgcccatgaatg---ataggctggataaagaaagtgtggcacgtatacagcatggaat s panTro1.chr19 40646294 1002 - 82489036 CTGGTCCAACCTGTCCAGCCACAGCTGTTGCTCGAAGGCTTGAAGTTCAATGGGACCCTCTCCCGCTTTCTACAAGCTGGTTCCTCTAttttcatgtttatttatttgggacggggtctggctctgtcacccaggctggagtgcagtggtgcgatcactgctcactgcagcatccacctcccagcgtccacccatcctcctggcctcagcctctggaacagctggggtacagatacgccccagcccgAACAGGTTTTCACTAGGTTGCCTGGGCTCTTTCTTTCTTTGTCTGTGTTTGTTT--------GTTGGTTGGTCGGTTGGtttttctttgtttctttcgagacggggctccggctctgccgcc-ggggctgcagtgcaatggcgcgatctcacctcactgcggccttctgggctcaagcgatccccccacTGTGCCCGGCCTGAAGACAGCCTTTAGAGAAAGAAGCAGGGGgagttcttccgaggacagacaagatttctggagtttggaaagggtgagagactgggtcagcgaaaggaacattccgatctttatgttgggatgcaacgtataatagatacagggatgaGACCCAAAAGAGCCGGCAGAGGTTTGTCATCGTGGTCGCAAGGCAACTGCCGGTGGCTGATCCCGTAAAGGATACGCATACCTAGAGCGGAGCCTAAAGATGCATCAAGCATGACGGGTGGAGCCACGATGCTTGGACTCGAGCTCTGCTCCTGTGCGTTCCGTGATAAATGGCTTATACTACCTGCACCTCAGTTTTTCCCGGGCAAAAAAGGAAGCTTGCTGCCGGTGCGTTGGCACCTGCCTTAAAGTGCCAGCTACCCAGCGGGCTGAAGAGGAAGAAGTtcctactaggaagacacgtggacacgtatgtttactgcagcactatttacaat---aaaggggacttggaaccaactcgaatgcccatgaatacttata---tgg-taaagaaagt-tggcacgtatacaccatggaat a score=38346.0 s hg17.chr17_random 63954 423 + 2618010 tactacgcagccataaaaaaggatgagttcatgacctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagcgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcatgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtacctatgttccaaacctgcacgtcctgcacatgtaccccagaacttGGGAGGGGGTGGGGGAAACCAAAAGAG----CGAGGGAGAGGCGGGGGGGGG--GAagagagagagagagggaaagag s panTro1.chr19_random 2005908 429 + 57627672 tactacgcagccataaaaaaggatgagttcatgtcctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagtgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcgtgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtatctatgttccaaacctgcacgtcctgcacatgtaccccagaacttgggagggggtgggggaaaccaaaagagagaacggaggagaggcggggggggggtgaagagagagagaaagagacagag a score=45992.0 s hg17.chr17_random 64396 580 + 2618010 agagagagagagagagacagagagagagacagagagacagagacagacacagagagacggagagacagagagagagagagagagaaagagagagagagagagagagacaggagaaagaAG---AACTCCGGGTGGGTCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCGTGGCCTTCCCAAAGCGCAGTAGCCACGGTGGAAACGAAAGCGTGCCGCATAAGCCTACCGTCTACCGCCC-------GCACATCAGGAACCTC-----AAGGTACTTCAGGGAAGCAGTTAAGTCAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGGTGCTACCGTCTCTTACCTCCCTCTACTTTTAGGAAACACGTTGTATCCCCGGAGGGggtgcaccgttcctggaagtactgcaataccaggtcgatgcgtggagtggacggagcaagctcctattccatctccctgctccaaaaatccatttaatatattgtcctcggatagaggacgtatcagatattaaactgataagaacagatactaca s panTro1.chr19_random 2108073 557 + 57627672 agagagagagaaagagaccgagagagaga--------------------------------------gaaagagagagagagagagagagagagagagagagagagagaggagaaagaAGTTCAATTCCGGGTGGATCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCGTGGCCTTCCCAAAGCGCAGTAGTCACGGTGGAAACGGAAGCGTGCCGCATAAGCCTACCGTCTACCGCCCACCGCCTGCAGATCAGGAACCTCCCTCACTGGTACTTCAGGGAAGCGGTTAAGTCAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGATGCTACTGTCTCTTACCTCTCTCTGCTTTTAGGAAACACGTTGTATCCCCGGAGGGggtgcaccgttcctggaggtactgcaataccaggtcgatgcgtggagtggacggagcaagctcctattccatctccctgctccaaaaatccatttaatatattgtcctcggatagaggacgtatcagatattaaactgataagaacagatactaca a score=83796.0 s hg17.chr17_random 64976 914 + 2618010 cttgatcttagccaaaaggccgagaagcgatGCGCTCGCCTTCGCGCCCGCCGTCACCGTCCCACTCTCATCCACATTCAAGTCGCGGTGAGAGCCCCAGCCTCGCTCCTTGCCCCATTCCCTCTGTCTCGTCCACAGCGCTATTGACGCCCTTACACTCTCGGGCTGATTTCTTATTCTCCGCCTTTGAAAAGGGAAATCTTACACCCGTGCTTCTTCCGGCGTTCCCGGGCTTTCATTTCGAATTTGCATGCCCCGCCCTTTCACAGAGGGCGTGGCCTCCGCCGTTGACTCCGCCCCCGGGGCCGCCTCTGCCTGGGGGAGCCGGGGCTCCGCTGGGGGCGACTTCCTTGTTCGTATCGAGCCAGCGAAAAGACAGAACCGGAAGAGACCGGGGGCGAAGGCGACAGGGGTCTGTGGAAGAGACCTGTCGGCGGAGAGCGGTCCACGTTTTCCTGGAGAAAGACGAGGCCCCAGGGCAGGAGCGCGGGCTGCGCTGGGCCTTTACTTCGCCGCCCGCGGGCGGGGAGACCGGCCCCGTACCCGAGGGGACGAGGGGACGAGGGGCCCATGCCCAGTCAGGGAAGCCGAAGGCCTGGAGGGGCTTCCGGGAGCAGGGGCTGGAGTTCCTCTGCCAGGCAGGAGGCTGGCACCAGACACCCGGCAGAGGGAGGCGGCGAGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGTGCTGTGTAGGG-Aacgctgcctctctgctcgggacgtggattcctttcccctcctcctcgcccggctacttctgacgcaggtcgtcaggactccgcttgggtgtcacccgtgcaggaagcctccc-ttagtcaagggccctcggcacccgccccatatgtgac s panTro1.chr19_random 55148578 907 - 57627672 cttgatcttagccaaa-ggccgagaagcgatGCGGTCGCCTTCGCGCCCGCCGTCACCGTCCCACTCTCATCCACATTCAAGTCGCGGTGAGAGCCCCAGCCTCGCTCCTTGCCCCATTCCCTCTGTCTCGTCCACAGCGCTATTGACGCCCTTACACTCTCGGGCTGATTTCTTATTCTCCGCCTTTGAAAAGGGAAATCTTACACCCGTGCTTCTTCCGGCGTTCCCGGGCTTTCATTTCGAATTTGCATGCCCCGCCCTTTCACGGAGGGCGTGGCCTCCGCCGTTGACTCCGCCCCCGGGGCCGCCTCTGCCTGGGGGAGCCGGGGCTCCGCTGGGGGCGACTTCCTTGTTCGTATCGAGCCAGCGAAAAGACAGAACCGGAAGAGACTGGGGGCGAAGGCGACAGGGGTCTGTGGAAGAGACCTGTCGGCGGAGAGCGGTCCACGTTTTCCTGGAGAAAGACGAGGCCCCAGGGCAGGAGCGCGGGCTGCGCTGGGCCTTTACTTCGCCGCCCGCGGGCGGGGAGACCGGCCCCGTACC--------CGAGGGGACGAGGGGCCCATGCCCAGTCAGGGAAGCCGAAGGCCTGGAGGGGCTTCCGGGAGCAGGGGCTGGAGTTCCTCGGCCAGGCAGGAGGCTGGCACCAGACACCCAGCAGAGGGAGGCGGCGAGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGTGCTGTGTAGGGAAAAGCTGCCTCCCTGCTCGGGACGTGGATTCCCTTCCCCTCCTCCTCGCCTGGCTACTTCTGACGCAGGTCGTCAGGACTCCGCTTGGGTGTCACGCGTCCAGGAAGCCTCCCTTTAGTCAAGGGCCCTCGGCACCCGCCCCGTATGTGAC a score=54304.0 s hg17.chr17_random 65890 581 + 2618010 tagcagccctcctgtgtatttcatcgcgcccccgttgtttatatcagccattccactcaccacccttctgggcaaccctttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagtaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACG-------------------ACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGGCTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTCCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGgctgagggctctactgcgcattacctggaaaacttatttcactccacggccctaagaggtgggccttattatTAGCcacggccagggttagggtgaggccactcctccagggcagaatttca s panTro1.chr19_random 55302653 600 - 57627672 TAGCAGCCCTCCTGTGTATTTCATCGCGCCCCCGTTGTTTATATCAGCTATTCCACTCACCACCCTTCtgggcaaccctttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtctggcgcctggcgtgtggaaggcgctcagcaaacgtttgtggagcgaagaaaCGACGCAAAGGTGATGAGCACGGCAGACCGTGATGAGCACGACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGACTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGGCTGAGGGCTCTACTGCGCATTACCTGGAAAACTTATTTCACTCCACGGCCCTAAGAGGTGGGCCTTATTATTAGCcacggccagggttagggtgaggcctctcctccagggcagaatttca a score=34004.0 s hg17.chr17_random 66471 377 + 2618010 gggggtgcccacccccccgccctaaatcattcagcaatcaacataaattatagttcaacgcaatgtatcttaTCTtgtgggccgcaagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtacagcgaagaaaataattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcatcactctttgttctattaccataatgatctctgttctattatgattaccttgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgacccgaagacgagagtgtgagccctcattcacgcccagagaag s panTro1.chrUn_random 29354416 377 - 240967748 gagggtgcccacccccccgccctaaatcattcagcaatcaatataaactatagttcaacgcaatatATCTTATCTtgtgggccgcaagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtacagtaaagaaaattattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcattactctttgttctattaccataatgatctctgttccattatgattaccctgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccaggagacaagagtgtgagccctcattcacgcccagagaag a score=3435.0 s hg17.chr17_random 66957 53 + 2618010 CATGCAACATTCGAAATGAAAGCCCGGGNAACGCCGGAAAGAACACGGGTGTA s panTro1.chr2 75213160 51 + 203813066 CATGCAA-ACTCGAAATGAAAGCCCGGG-AACGCCGGAACAAGCACGGGTGTA a score=28901.0 s hg17.chr17_random 67010 380 + 2618010 AGATTTCCCTTTTCAAG-GCGGAGAATAAGAAATCAGCCCGAGAGTGTAAGGGCGTCAATAGCGCTGTGGACGAGACAGAGGGAATGGGGCAAGGAGCGAGGCTGGGGCTCTCACCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCGAAGGCGAGCG-Catcgcttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaa-tatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTT s panTro1.chr19 40585594 382 - 82489036 AGATTTTTCTTTTAAAACGTGGAGAATAAGAAATCAGCCCGAGTGTGTAATGGCGTCAATATTGGTGTGGACGAGACAAAGTGAATGAGGCAAGGAGCGAGGCTGGGGCTCTCACCGCGTCTTGAATGTGGATGAGAGTGGGACGGTGATGGCAGGGAGGAAGGCGA-CGACatcgcttctcgtccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatcagaggacaattatattagatagatttttggagcagggagatgaaataggagcttgctctgtccactccacgcgtcgacctggtattgcagtacctccaggaatggggctccCTCTCCTGGGCTACAACCTGTTT a score=27095.0 s hg17.chr17_random 67390 446 + 2618010 CCTAAAAGTAGAGGGAGGTAAGAGACGGTAGCACCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACTGCTTCCCTGAAGTACCTT-----GAGGTTCCTGATGTGC-------GGGCGGTAGACGGTAGGCTTATGCGGCACGCTTTCGTTTCCACCGTGGCTACTGCGCTTTGGGAAGGCCATGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGACCCACCCGGAGTT---CTTCTTTCTCCTGtctctctctctctctctctctctctctctctctttctctctctctctctctgtctctccgtctctctgtgtctgtctctgtctctctgtctctctctctgtctctctctctctctctctctctctctctctcctctctctctgtctctctct s panTro1.chr19_random 55519221 374 - 57627672 CCTAAAAGCAGAGAGAGGTAAGAGACAGTAGCATCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACCGCTTCCCTGAAGTACCAGTGAGGGAGGTTCCTGATCTGCAGGCGGTGGGCGGTAGACGGTAGGCTTATGCGGCACGCTTCCGTTTCCACCGTGACTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGATCCACCCGGAATTGAACTtctttctcctctctctctctctctctctctctctctctctctctctctttctctctctctcggtctc---------------------------------------------------------------------------------------tttctctct a score=38476.0 s hg17.chr17_random 67836 424 + 2618010 ctctttccctctctctctctctTC-CCCCCCCCCCGCCTCTCCCTCG----CTCTTTTGGTTTCCCCCACCCCCTCCCaagttctggggtacatgtgcaggacgtgcaggtttggaacataggtacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcatgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcgctgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggtcatgaactcatccttttttatggctgcgtagta s panTro1.chr19_random 55621335 429 - 57627672 ctctgtctctttctctctctcttcaccccccccccgcctctcctccgttctctcttttggtttcccccaccccctcccaagttctggggtacatgtgcaggacgtgcaggtttggaacatagatacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcacgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcactgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggacatgaactcatccttttttatggctgcgtagta a score=87740.0 s hg17.chr17_random 68260 1010 + 2618010 attccatgctgtatacgtgccacactttctttatccagcctat---cattcatgggcattcgagttggttccaagtc---tttgctattgtaaatagtgctgcagtaaacatacgtgtccacgtgtcttcctagtaggaACTTCTTCCTCTTCAGCCCGCTGAGTAGCTGGCACTTTAAGGCAGGTGCCAACGCACCGGCAGCAAGCTTCCTTTTTTGCCCGGGAAAAACTGAGGTGCAGGTAGTATAAGCCATTGATCACGGAACGCACAGGAGCAGAGCTCGAGTCCAAGCATCGTGGCTCCACCCGTCATGCTGGATGCATCTTTAGGCTCCGCTCTAGGTATGTGTATCCTTTACGGGATCAGCCACCGGCAGTTGCCTTGCGAGCACGATGACAAACCTCTGCCGGCTCTTTTGGGTCtcatccctgtatctat---acgttgcatcccaacataaagaccggaatgttcctttcgctgacccagtctctcaccctttccaaactccagaaatcttgtctgtcctcggaagaactcCCCCTGCTTCTTTCTCTAAAGGCTGTCTTCAGGCCGGGCACAgtgggaggatcgcttgagcccagaaggccgcagtgaggtgagatcgcgccattgcactgcagcccccggcggcagagccggagccccgtctcgaaacaaacaaacaaaaaccaaccaaccaaccaaccaaccaacaaacaaacacagacaaagaaagaaAGAGCCCAGGCAACCTAGTGaaaacctgttcgggctggggcatacctgtaccccagctgttccggaggctgaggccaggaggatgggtggacgctgggaggtggatgctgcagtgagcagtgattgcaccactgcactccagcctgggtgacagagccagaccccgtcccaaataaataaacataaaaataaaggaaCCAGTTTGTAGAAAGCGGGAGAGGGTCCCATTGAACTTCAAGCCTTCGAGCAACAGCTGTGGCTGGACAGGTTGGACCAG s panTro1.chr19 41841740 1002 + 82489036 attccatggtgtatacgtgcca-actttcttta-cca---tataagtattcatgggcattcgagttggttccaagtccccttt---attgtaaatagtgctgcagtaaacatacgtgtccacgtgtcttcctagtaggaACTTCTTCCTCTTCAGCCCGCTGGGTAGCTGGCACTTTAAGGCAGGTGCCAACGCACCGGCAGCAAGCTTCCTTTTTTGCCCGGGAAAAACTGAGGTGCAGGTAGTATAAGCCATTTATCACGGAACGCACAGGAGCAGAGCTCGAGTCCAAGCATCGTGGCTCCACCCGTCATGCTTGATGCATCTTTAGGCTCCGCTCTAGGTATGCGTATCCTTTACGGGATCAGCCACCGGCAGTTGCCTTGCGACCACGATGACAAACCTCTGCCGGCTCTTTTGGGTCtcatccctgtatctattatacgttgcatcccaacataaagatcggaatgttcctttcgctgacccagtctctcaccctttccaaactccagaaatcttgtctgtcctcggaagaactcCCCCTGCTTCTTTCTCTAAAGGCTGTCTTCAGGCCGGGCACAgtggggggatcgcttgagcccagaaggccgcagtgaggtgagatcgcgccattgcactgcagcccc-ggcggcagagccggagccccgtctcgaaagaaacaaagaaaaaCCAACCGACCAACCAAC--------AAACAAACACAGACAAAGAAAGAAAGAGCCCAGGCAACCTAGTGAAAACCTGTTcgggctggggcgtatctgtaccccagctgttccagaggctgaggccaggaggatgggtggacgctgggaggtggatgctgcagtgagcagtgatcgcaccactgcactccagcctgggtgacagagccagaccccgtcccaaataaataaacatgaaaaTAGAGGAACCAGCTTGTAGAAAGCGGGAGAGGGTCCCATTGAACTTCAAGCCTTCGAGCAACAGCTGTGGCTGGACAGGTTGGACCAG a score=48976.0 s hg17.chr17_random 69270 395 + 2618010 CAGGCTGGAGCAGTCGCCATCTTGGCAGGGATCATTGACCCTGATCTATCGTCGGGAGGAGGA--AGAGCTGATCTTACGCAGGGAGGGCAGGTGGACTATGTGTGGACTCT-GGTGACCTGTTTGGGTGCCAGGTGTTACTCCCAGGGCCACCCGTAACTGTGAATGTGCAGG------AACCCTGACTTGAGAAGGGCCTGGCCACGGGGGGCTTAGGCCCCTGGGGAATGAGAGTTTGGTTCCCGGTACCCAGGGAAACCACCAGCATCGGCAGAGGTGATAGCTGAGGAGGAGCGGGGATTTGGACGAGAGACACAGGATGAGTACCGGGGGGCAGCCCCGTGATCAACAACTGCTGCAAGAGGGGCCGTTTGTTCGACTCGCTAGTCTTCTGCGGCTCT s panTro1.chr19 41842742 394 + 82489036 CAGGCTGGAGCAGTCGCCATCTTGGCAGGGATCATTGACCCTGATCTATCGCCGGGAGGAGGA--AGAGCTGATCTTACGCAGGGAGGGCAGGTGGACTATGCGTGGACTCT-GGTGATCTGTTTGGGTGCCAGGTGTTACTCCCAGGGCCACCCGTAACTGTGAATGTGCAGG------AACCCTGACTTGAGAAGGGCCTGGCCACGGGGGGCTTAGGCCCCTGGGGAATGAGAGTTTGGTTCCCGGTACCCAGGGAAACCACCAGCATCGGCAGAGGTGATAGCTGGGGAGGAGCGGGGATTTGGACGAGAGACACAGGATGAGTACC-GGGGGCAGCCCCGTGATCAACAACTGCTGCAACAGGGGCCGTTTGTTCGACTCGCTAGTCTTCTGTGGCTCT s canFam1.chr2 74502349 364 + 87725193 CAGGCTGGGGAGGACG-------AGGGGGAGGGGTTGACCCTGCT-TAT-------AAAAGGAATAAAGCTGCTGTTACACAATTAGGATA------------ATCGACTCCAGGTGATCTATTGGAGTGTTTCGTGATACTCCTTGGTACAGCTGTGACTATAAATGGCCAGATAATACAACTCTGGCCTGAGAAGGTCCTGGAGACCAGGGGCTCAGGCTCCTCGAGGAGGAGGGGCCGGATCATGCCA-CCAGATGAGCCACTGAGGCCAGC-----TGACAGTAGGGTGGAATCATAGA---GGAGAAGAGACAT--GATGATTATC-AGCTGCAGCCCTGAGCCAGTCTGCAGTGGCGGGGGATCTAGTTTGTCCCACTAAC-ATTCCTCCCAGGTTCT a score=65571.0 s hg17.chr17_random 69665 712 + 2618010 ATGCGGTACTAAAGAGCAGAAGACAGAAGAtacaaaaaccacaaaaagtagccgggcgtggtgctgcccgtcaataatcccagctactcgggaggctgagacaggagaatcgcttgaacccgggaggcggaagtttcagcgagccgagatcacgccgttgcagtccaacctgagcgtccgagcgagactctatctcagaaaataaagacagaatgaaaGagcccggcgcggtggcttacgcctgtaatcccagcgctttgggaggccgaggcgggcggatcgcctgaggtcaggagctcgagaccagcctggccgacatggcgaaaccccctaaaaatacaaaaattagccgggcgtggtggcctgcgcctgtaatcccagctacccaggaggctgaggcaggagaatcgctggaacccgggaggtagaggctgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagagtttgtctg------gaaaaaaaaaaaaaaaaaGCCAGGGTGAgcggtggctcaagcctgtaatcgcaagcaacactttgggaggcggcagctgggcagatcaccggaggtcgggagttggagaccagcctgagcaacgtggagaaaccccatctgtactaaaaatacaaagttagccgggcgtggtggcacatgcctgtagtcccagctgctcgggaggctgaggcagggga s panTro1.chr19 41843136 718 + 82489036 ATGCGGTACTCAAGAGCAGAAGACAGAAGAtacaaaaaccacaaaaggtagccgggcgtggtgctgcccgtcaataatcccagctactcgggaggctgagacaggagaatcgcttgaacccgggaggcggaagtttcagcgagccgagatcacgccattgcagtccaacctgagcgtccgagcgagactctatctcagaaaataaaGACAGAATGAAAGagcccggcgcggtggcttacgcctgtaatcccagcgctttgggaggccgaggcgggcggatcgcctgaggtcaggagctggagaccagcctggccgacatggcgaaaccccctaaaaatacaaaaatgagccgggcgtggtggcctacgcctgtaatcccagctacccaggaggctgaggcaggagaatcgctggaacccgggaggtagaggctgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagagtttgtctgccaaaaaaaaaaaaaaaaaaaaaaGCCAGGGTGAgcggtggctcaagcctgtaatcgcaagcaacactttgggaggcggcagctgggcggatcaccggaggtcgggagttggagaccagcctgaccaacatggagaaaccccatgtgtactaaaaatacaaacttagccgggcgtggtggcacatgcccgtagtcccagctgctcgggaggctgaggcagggga a score=28832.0 s hg17.chr17_random 70377 348 + 2618010 atcgcttgaacccgggaggcggagg-ttgcagagagcctagatcgcgccattggactc-caggctgggtaacaagagcggaacctccgtctgaaaaaaaaaaaaaaaaaaaaaaaTTGGGAGAAttttgctcccactgccgtcaaaatcccacgtgtatttcacacttacagcacagctccattagaactgaccacatttccagggctccctagatacctgtggctagcggctgccatactacaccgtgctgggctgtagaaTGGGGATGACAAGACAGGGCGGCGGAGATTGTGTTGGCGTGAAGCGAGGGAAACACTCGGCCGCAGGACAAAACTAAAACAGCAAGGG s panTro1.chr19 41852325 343 + 82489036 atcggttgaacccgggagggggagggttgcggagagcttaaatcgcgccatttgactctcaggctgggtaacaagagggaaacctccgttt-------aaaaaaaaaaaaaaaaaTTGGGGGAATTTTGCTCCCACTGCCGTGAaaatcccatgtgtatttcacacttacagcacagctccattagaactgaccacatttccagggctccctagatacctgtggctagcggctgccatactacaccgtgcTGGGCTGTAGAATGGGGATGACAAGACAGGGCGGCGGAGATTGGGTTGGCGTGAAGCGAGGGAAACACTCGGCCGCAGGACAAAACCAAAACAGCAAGGG a score=30591.0 s hg17.chr17_random 70833 325 + 2618010 GCGCGGGGGAAAAGGGG-AAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGGCTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGGCTGAGGGCTCTACTGCGCATTACCTGGAAAACTTATTTCACTCCACGGCCCTAAGAGGTGGGCCTTATTATTAGCcacggccagggttagggtgaggccactcctccagggcagaatttca s panTro1.chrUn_random 85642789 326 - 240967748 GCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGACTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCTGCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAACTTCAGCGGAGGGCTGAGGGCTCTACTGCGCATTACCTGGAAAACTTATTTCACTCCACGGCCCTAAGAGGTGGGCCTTATTATTAGCcacggccagggttagggtgaggcctctcctccagggcagaatttca a score=7729.0 s hg17.chr17_random 71159 85 + 2618010 gggggtgcccacccccccgccctaaatcattcagcaatcaacataaattatagttcaacgcaatgtatcttaTCTtgtgggccgc s panTro1.chr19_random 55303253 85 - 57627672 gagggtgcccacccccccgccctaaatcattcagcaatcaacataaactatagttcaacgcaatatATCTTATCTtgtgggccgc a score=130773.0 s hg17.chr17_random 71244 1504 + 2618010 aagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtacagcgaagaaaataattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcatcactctttgttctattaccataatgatctctgttctattatgattaccttgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccagaagacgagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcagacccggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcatccggaggctccaacgtctgtctccctgtgatgctgtgcttcagtggtcacgctccttgttcactttcatgttcagcctgtacacctggctcctccttttaagttcttagaagacagcagtagcagaactagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtgcacacgtgactcgcgtgacctatcgatcattggagatgactggcactccttaccctgcccccttgccttgactacaataaatagcagcgcctccaggcactcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgc--acacacgcgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCAGCTACAACATAATCAGGATATTCACGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTAGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACACAATCTCCGCCGCCCTGTCTTGTCATCCCCATTCTACAGCCCAgcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgcgctgttaagtgtgaaatacacatgggattttgacggcagtgggagcaaaaTTCTCCCAAttttttttttttttttttttttttttcagacggaggttccgctcttgttacccagcctg-gagtccaatggcgcgatctaggctctctgcaa-cctccgcctcccgggttcaagcaattcccctgcctcagcctcccgagcagctgggactacaggcatgtg-ccaccacgcccggctaagtttgtatttt s panTro1.chr19 40635290 1494 - 82489036 aagccatccagatgcccaggcaagagcctgaaggcacaagctgttccagtatagtaaagaaaattattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcattactctttgttctattaccataatgatctctgttccattatgattaccctgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccaggagacaagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcaggccgggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcagccggaggctccaacgtct----ccctgtgatgctgtgcttcagtgggcacgctccttcttcactttcatgttccgcctgtacacctggctcctccttttaagttcttagaagacagcagtagcacaattagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcactggagatgactggcactccttaccctgcccccttgccttgactacaataaatagcagcgcctccaggcattcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgcgcacacacacgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCGGCTACAACATAATCAAGATATTCATGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTGGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACCCAATCTCCGCCGCCCTGTCTTGTCATCCCCATTCTACAGCCCAgcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctg-taagtgtgaaatacacatgggatttTCACGGCAGTGGGAGCAAAATTCCCCCAAttttttttttttttttt----------aaacggaggtttccctcttgttacccagcctgagagtcaaatggcgcgatttaagctctccgcaaccctccccctcccgggttcaaccgattcccctgccccacccctccgagcagctggaaatacaggcttgggcccaccccgcccggctaaagttgtatttt a score=338707.0 s hg17.chr17_random 74651 3701 + 2618010 gaccagcctggccaatatagtgaaaccccatctctactaaaaatacaaaaattagcagggtgttgtggtgggctcctgtaatccccactacttgggaggctgaggcagagaactgcttaaacccaggaggcagaggttgcaatgagccaagatcacgccactgcactctggcctgggtgacagagcaagactccattaaaaaaaaaaaaaaaagttaaaatgagcatacaatttcaaaaaatttgcagcctgacaatgcggtagaaaagaaaaacccaggccgggtgcagtgcctgatgcccgtaatcctagtactttgagaggctgaagtgggcagatcatgaagtcaagagattgagaccatcctggccaacctggtgaaactcggtctctactgaaaatacaaaaattagctgggcatggtggcacacacctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcaatgagccgagattgtgccagtgcactccagcctggcaacagatcaagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaattcagaggagaaattcaagctggcctcagaaatttgcataagtaacgagaagccaaatgttaatcatgaagacagtggggggaaatgtctccagggtatgtcagagaccttcatgtggcagaccctcccatcacaggcttggaggcctagtaggaaaaaatggtttcatgggctgtgcccagggcccccctgctctgtgcagcctggggacttggtgccttgtatcccagctgctccagccacagctaaaaggggccaaggtgcagctcaggctgtggcttcagagggtgcaaaccctaggccttggcagctttcatgtggtgttgtgcctgcgagtgcacagaagtcaagaattgaggcttgggaacctctgccaagatttcagaggatgtgtagaaatgcctggatgtccaggtagaggtgggctgcaggggtggagccctcatggagaaccactgctagggcagtgcaaagggaaattgtggggtgcaagccctcacacagactcccaactggggcagtgcctagtggagctgcaagaaaagagtcactgtcctccagaccccagaatggtagctccactgacagcttgcaccttgctcctggaaaagccacagacactcaaggcctgcctgtgaaagcagctgggagggggggctataccctgcaaagccacaggggcagagctgccaaggccatgggagcccacctcttgcatcagtgtgacctggacatgagacatggagtcaaaggaaatcattttggggctttaagatttgactgctgccaggcatgtcggctcactcctgtaattccagcactttgggaggccaaggtgggaggatcgcttgagttcaggagttcaagaccagcctggccaacatggtgaaactccgtctctactaaaaatacaaaaaaaattagccaggcattgtggcatgtgcctgtaatcccagctactcaggaggctgaggcagaagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcatgccactgcactccagcctgggtgacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaaagatttgactgctccactggacttcagacttgcataggagatctgtaacccctttgttttggccaatttctcccattttgaacagctgtatttactcaatgcctgtaccctcattgtatctaggaattaacaaacttgctttttttttttt-ctttttgagacagagtctcactctgtcacccaggctggagtgcagtgccatgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgcttcggcctctcgagtagctgggattacaggcatgtgccaccacgcccggctaatttttttgtatttttagtagagatggggtttcactatgttggccagactggtctcaaactcccgaactcagatgatctgcctgccttggcctcccaaagtgctgggatcacaggcatgagccaccatgcccgaccctaacttgcttttgattgtacaggctggtaggcggaagggacttgccttgtctcagatgagactttggactgtagacttttgagttaatgctgaaataagactttgggagactgttgggaaggcatgataggttttgaaatgtgaggacatgagatttgggaggggctaCAGCAAAAtgatatggtttggctgtgtccccacccaagtctcatcttgaattgtagctcccataattcccacgtgtcatgggagggacccagtgggaggtaattgaatcatggggccaggacttttccatattgttctcatgatagtgaataagtctcacaagatctgatggttttataaaggggagttcccttgcacaagttctctctcaccttccaccatgtaagacatgcctttcaccttccaccatgattgtgaggcttccccagccacgtggaactgtgagtccattaaacctctttttctttataaattacccagtctccggtatgtttttattagcagcacgagcacagactaatgcaGACTTATTGGGCCCCAGGTAGCAAATGTGGGATGTCTATTTTCCCCCAGCTTGCCCAGGGttaaggtgagcccagtcagcttccaccagttacactcagtgacacaggtgcagtttgttagagttggtgcagttagattAGTTggaggtgggcccaaggactttggggatgcgggttgagggggtggggagtggggtgacaggtaccaaagggtagcagagggagggatggtagaggtgattggagagtgtgaccctcgaagtggatggggttatggcaatcgacaatgacatgacctagggttaga----ccagggaagtgagtggctggggtagtcaaagctgaggtcaaggaattggggaaccagggtgtcgattgatgacaggagttatgctggagaaagtcagtgctccaggagctaaaaaccttcaaggaataaagtaagtgttggcatggagtgaccagcagccaggagagacaacagcaacaaggagaggtagtgggCAGCACAGGTGCAAGGCACAATGGAGTGAGAGGTGGGGAGAGCAAACAGAAAGAGGAAAGCAA----TGTCTTCAGCGGGAGGATAGAGCAAACGAAGAAAGGGGggccgggcacagtggctcacacctgtaatcccagcactttgggaggccagtgcgggtggatcacctgagtttggcagtttgagaccagcctgaccatcatggagaaaccccatctctactaaaaatacaaaaaaaatttagccgggcgtggtggcacatgcctgtaatcccagctactctggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcgcaccattgcactccagcctaggcaacaagagtgaaactcagcctcaaaaaaaaaaaaaaaagaagaagaagaagaa---------gaagaagaaAGGAGGCTGGGAATAGGGAGGATGGTAGGAAAATTAGCAAGGTTTCAGGAATCAGACATGGGATAAGAGACCGGAGCTTCTTGTGACTGGCGGGCATAGGGCAGAAATGCAGAACTGTGGGATC s panTro1.chr19 40661125 3701 - 82489036 gaccagcctggccaatatagtgaaaccccatctctactaaaaatacaaaaattagcagggtgttgtggtgggctcctgtaatccccactacttgggaggctgatgcagagaactgcttaaacccgggaggcagaggttgcaatgagccaagatcacgccactgcactctggcctgggtgacagagcaagactccattaaaaaaaaaaaaaaa-GTTAAAATgagcatacaatttcaaaaaatttgcagcctgacaatgcggtagaaaagaaaaacccaggccgggtgcagtgcctgatgcccgtaatcccagtactttgagaggctgaagtgggcagatcatgaagtcaagagattgagaccatcctggccaacctggtgaaacccggtctctactgaaaatacaaaaattagctgggcatggtggcacacacctgtagtcccagctactcgggaggctgaggcaggagaatcacttgaacccgggaggcggaggttgcaatgagccgagattgtgccagtgcactgcagcctggcaacagatcaagactccatctcaaagaaaaaaaaaaaaaaa------ttctgaggagaaattcaagctggcctcagaaatttgcataagtaacgagaagccaaatgttaatcatgaaaacagtggggggaaatgtctccagggtatgtcagagaccttcatgtggcagaccctcccatcacaggcttggaggcctagtaggaaaaaacggtttcatgggctgtgcccagggcccccctgccctgtgcagcctggggacttggtgccttgtatcccagctgctccagccacagctaaaaggggccaaggtgctgctcaggctgtggcttcagagggtgcaaaccctaggccttggcagctttcatgtggtgttgtgcctgcgagtgcacagaagtcaagaattgaggcttgggaacctccgccaagatttcagaggatgtgtagaaatgcc---------aggtagaggtgggctgcaggggtggagccctcatggagaaccactgctagggcagtgcaaagggaaattgtggggtgcaagccctcacacagactcccaactggggcagtgcctagtggagctgcaagaaaagagtcactgtcctccagaccccagaatggtagctccactgacagcttgcaccttgctcctggaaaagccacagacactcaaggcctgcctgtgaaagcagctgggagggggggctataccctgcaaagccacaggggcagagctgccaaggccatgggagcccacctcttgcatcagtgtgacctggacatgagacatggagtcaaaggaaatcattttggggctttaagatttgactgctgccaggcatgttggctcactcctgtaattccagcactttgggaggccgaggtgggaggatcgcttgagttcaggagttcaagaccagcctggccaacatggtgaaactccgtctctactaaaaatacaaaaaaaattagccaggcattgtggcatgtgcctgtaatcccagctactcaggaggctgaggcagaagaattgcttgaacctgggaggtggaggttgcagtgagccaagatcgtgccactgcactccagcctgggtgacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaaagatttgactgctccactggacttcagacttgcataggaaatctgtaacccctttgttttggccaatttctcccattttgaacagctgtatttactcaatgcctgtaccctcattgtatctaggaattaacaaacttgctttttttttttttctttttgagacagagtctcactctgtcacccaggctggagtgcagtgccatgatcttggctcactgcaacctctgcctcctgggttcaagcgattctcctgcttcggcctctggagtagctgggattacaggcatgtgccaccacacccggctaatttttttgtatttttagtagagatggggcttcactatgttggccagactggtctcaaactcccgaactcagatgatctgcctgccttggcctcccaaagtgctgggatcacaggcatgagccaccatgcctgaccctaacttgcttttgattgtacaggctggtaggcggaagggacttgccttgtctcagatgagactttggactgtagacttttgagttaatgctgaaataagactttgggagactgttgggaaggcatgataggttttgaaatgtgaggacatcagatttgggaggggctaCAGCAAAAtgatatggtttggctgtgtccccacccaagtctcatcttgaattgtagcgcccataattcccacgtgtcatgggagggacccagtgggaggtaattgaatcatggggccaggacttttccatattgttctcatgatagtgaataagtctcacaagatctgatggttttataaaggggagttcccctgcacaagttctccctcaccttccaccatgtaagacatgcctttcaccttccaccatgattgtgaggcttccccagccacgtggaactgtgagtccattaaacctctttttctttataaattacccagtctcaggtatgtttttattagcagcacaagcacagactaatgcaGACTTATTGGACCCCAGGTAGCAAATGTGGGATGTCTATTTTCCCCCAGCGTGCCCAGGGTTAAGGTGAGCCCAGTCAGCTTCCACCAGTTACACTCAGTGACACAGGTGCAGTTTGTTAGAGTTGGTGCAGTTAGATTAGTTAGAggtgggcccaaggactttggggatgcgggttgagggggtggggagtggggtgacaggtaccaaagggtagcagagggagggatggtagaggtgattggagagtgtgaccctcgaagtggatggggttatggcaatcgacaatgacatgacctagggt-agagaatccagggaagtgagtggctggggtagtcaaagctgaggtcgaggaataggcgt-ccagggtgtcgattgatgacaggagttatgctggagaaagacagtgctccaggagctaaaaaccttcaaggaataaagtaagtgttggcatggagtgaccagcagccaggacagacaacagcaacaaggagaggtagtgggCAGCACAGGTGCAAGGCACAATGGAATGAGAGGTGGGGAGAGCAAACAGAAAGAGGAAAGCAAGCAATGTCTTCAGCGGGAGGATAGAGCAAACGAACAAAGGGGggccgggcacagtggctcacacctgtaatcccagaactttgggaggccaatgtgggtggatcacctgaggtcggcagtttgagaccagcctgaccatcatggagaaaccccgtctctactaaaaatacaaaaaaaatttagccgggcgtggtggcacatgcctgtaatcccagctactccagaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcgcaccattgcattccagcctgggcaacaagagtgaaactcagcctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGAAGAAGAAAGGAGGCTGGGAATAGGGAGGATGGTAGGAAAATTAGCAAGGTTTCAGGAATCAGACATGGGATAAGAGACCGGAGCTTCTTGTGACTGGCGGGCATAGGGCAGAAATGCAGAACTGTGGGATC a score=23766.0 s hg17.chr17_random 78352 61 + 2618010 GTTCTACAGTGAGTGGCAGATACCTGGAAGGCAGCTGCAGCCTTAGGTCTTGGCTCTCACT s panTro1.chr19 40664826 61 - 82489036 GTTCTACAGTGAGTGGCAGATACCTGGAAGGCAGCTGCAGCCTTAGGTCTTGGCTCTCACT s mm5.chr16 4915272 61 + 98801893 GTTCTACAGTGAGTGGCGGGGACCTGAGAGGGAGGCTCAATCAGGAGCCTTGACTCTCCCT s rn3.chr10 100262743 61 - 110733352 GTTCTACAGTGAGTGGCGGGGACCTGGGAGGAAGGCTCAACCAGGAGCCTTGACTCTCCCT a score=535.0 s hg17.chr17_random 78413 7 + 2618010 AATTGGG s panTro1.chr19 40664887 7 - 82489036 ACCTGGG s mm5.chr16 4915333 7 + 98801893 GTTTTGG a score=74985.0 s hg17.chr17_random 78420 807 + 2618010 TGATGTCACCTCTGTCCAAGCAGTCGATCCCAGGAGCCTCCGAAGACCACCAGAGCAGTCCTTAGTGCCAGGTGAGTCTGCTAAAATAAAAACACAACGCTTTGCCGAGAAGCGGGGTAAAAAAAAGCTTTATCGCCGGCTGCAATCGAATTTCGGGGACAggccgggtgcagtaactcaggcctgtaatcccagcactttgggaggcccaaacgggtggatcactttgaggccaggcgttcgagaccaacctggccaacatggcaaaaccccgtctctactaaaaatgcaaaaaattagccagtcatggtgggcacgtgcctgtaatcccagctactcaggaggctgaggcacaagaatcacctgaacttgggaggcagaggttgcagtaagcccagatctggccactgcactccagccggggttgggggttgtgggggacagagtgagactatcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-------GGAAGTGGAGACTAGCCACAGACCCAAAAGAAAACGAGCAAAAATGTAAAGCCTACTTTTGGCAATTGCTCATGTGGAGAGGAATGAATGCAGTGTTCTTGAAATTATTGAAATATTAGAtccggaagctgaagtgggagaaccatctgagtccaggaagtcgagatcatagtgaactctcatcccgccactgcactccagcctggatgacaaaagtgacactctataagacaaaaaaaaaaaaaaaaaaa----GGCGGGGAGGGGG-CTGGTCACACATACTCTCACCTAGACAAGGATATTGACGACCAATTCTGAAGC s panTro1.chr19 40664894 819 - 82489036 TGATGTCACCTCTGTCCAAGCAGTCGATCCCAGGAGCCTCCGAAGACCACCAGAGCAGTCCTTAGTGCCAGGTGAGTCTGCTAAAATAAAAACACAACGCTTTGCCGAGAAGCGGGGTAAAAAAAAGCTTTATCGCCGGCTGCAATCGAATTTCGGGGACAggccgggtgcagtaactcaggcctgtaatcccagcactttgggaggcccaaacgggtggatcactttgaggccaggtgttcgagaccaacctggccaacatggcaaaaccccgtctctactaaaaatgcaaaaaattagccagtcatggtgggcacgtgcctgtaatcccagctactcaggaggctgaggcacaagaatcacctgaacttgggaggcagaggttgcagtaagcccagatctggccactgcactccagccggggttgggggctgtgggggacagagtgagactatcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGAAGTGGAGACTAGCCACAGACCCAAAAGAAAACGAGCAAAAATGTAAAGCCTACTTTTGGCAATTGCTCATGTGGAGAGGAATGAATGCAGCGTTCTTGAAATTATTGAAATATTAGAtccggaagctgaagtgggagaaccatctgagtccaggaagtcgagatcatagtgaactctcatcccgccactgcactccagcctggatgacaaaagtgacactctataagacaaaaaaaaaaaaaaaaaaaaaaaGGCGGGGAGGGGGGCTGGTCACACATACTCTCACCTAGACAAGGATATTGACGACCAATTCTGAAGC a score=29496.0 s hg17.chr17_random 79252 385 + 2618010 ATATAACAAAGTATAACCTTTAAAACACAACGCTCACTCACCTAAAAAATCGTTCACCTTTGTTTGAAGTACTACAACCTCCCAACCCCACCGTTTTCTCCAAAAACCCCCTCAACACAGCATTCTCAGA--AACAAAAAGAAAGAACGCACACACTAAGCTAGGAAAAACACACATAATTACACCTCACCACAAACAGAGATCTGGAAAAATTTGTCGAATCCAGCATCTTTGCCTTCGCCATTACCACCCTCATATCACCATATTACACCCACGGTGAGCAACGATAGGGGCAATTGACAACTTC----GTTTCTCAATAGGCCTGTTGAAAACAGCAAGCCTTTGGGCATGGTTTATAGTTGGCTACGTTTTCAAGTGAATTCTCAGC s panTro1.chr19 40665765 383 - 82489036 ATATAAC---GCATAACCTTCAAAACACAACGCTCACTCACCTAAAAAAACATTCACCTTTGTTTGAAGTACTACAACCTCCCAACTCCACCGTTTTCTCCAAAAACCCCCTCAACACAGCGTCCTCGGAGGAA-AAAAAAAAAAAACGCACACACTAAGCTACCAAAAACACACATAATTACACTTCAACACA----GAGTTCTGGAAAATTTTGTCAAATCCAGCATCTTTGCCGTCGCCATTACCACCCTCATATCACCATATTTCAGTCACGGTGAGCAACGGTAGGGGCAATTGACAACTTCCTTTGTTTCTCAATAGGCCTGTTGAAAACAGCAAGCCTTTGGGCATGGTTTATAGTTGGCTACGTTTTCAAGTGAATTCTCAGA a score=51043.0 s hg17.chr17_random 79637 416 + 2618010 TCTGTTTTTGCCCCGTGGCTGA------AGCGCCATTTCTAATTTGCATGTCTCGCCCTTTCCCGCGTGG------GTAGGCGTGGCTACGGCGATCTGAGTCCCCGCTGCGGTCCAGCTCTGCTCGCAGCGGCCGGCCGAAGCTGGGCTGGGGCTCCCGGTCTGGACCATC-CGGGGGTCAAGACAGTGGTCAGGGGGAAATGCGCGTGGGCGTCACTAGCGGTCTGTGGAAGGGAGTTGGAGGAGAGTGGTCCGAGCTCTTTTGAGGAAAGCCATCAGGTCATCACTGTAAAGACTGGAGCGTCCCGCGGCCTGGCTGGGTCCCAAGCGAAGGCGGAGCCGACGAG-GCCCCGCCGCCCCCCACCCCCTTCCCGGGGCCACAGAGAGAAGTCGGGTCGCGAGACCGCGCC--GAGGGGGCTGCCGCCCTG s panTro1.chr19 40666148 416 - 82489036 TCTGTTTTTGCCCCGTGGCTGA------AGCGCCATTTCTAATTTGCATGTCTCGCCCTTTCCCGCGTGG------GTAGGCGTGGCTACGGCGATCTGAGTCCCCGCTGCGGTCCAGCTCTGCTCGCAGCGGCCGGCCGAAGCTGGGCTGGGGCTCCCGGTCTGGACCATC-CGGGGGTCAAGACAGTGGTCAGGGGGAAATGCGCGTGGGCGTCACTAGCGGTCTGTGGAAGGGAGTTGGAGGAGAGTGGTCCGAGCTCTTTTGAGGAAAGCCATCAGGTCATCACTGTAAAGACTGGAGCGTCCCGCGGCCTGGCTGGGTCCCAAGCGAAGGCGGAGCCGACGAG-GCCCCGCCGCCCCCCACCCCCTTCCCGGGGCCACAGAGAGAAGTCGGGCCGCGAGACCGCGCC--GAGGGGGCTGCCCCCCTG s canFam1.chr9 12545494 363 + 53642819 TCCGTCGTCGCGTCGTCGCCGGCCCCGCAAGGCCCTTCCTAATTTGAATGGCCCGCCCCTCCGCGCGCGGAGCCCTAGAGGCGCGGCG--GGCGG--CGGAACCCGGCTGCGGGCCAG-----------GCGCC--------------CTCGGCTTCCCGCTTTGGCCCGCCTCGGGGG--AGGGCCGT--------GGAACCGGGCGTGGG----GCTGGCGCC--------GGGGGCTGGCGCTGAGTCGTCCCAGGGCCC---AGGAGGCTCCTCACGTCGTCACTGC---------GGGACCCTACAGGCTGGCTGGGGCCAGGGCGTGG--GGAGCCCAGAAGCGCCTGGCTG----GCGTCACCTGCCAAGGGCTCCAGACACCAGTTGGGACCCGAGACCGGGCCCTGAACGGGTGGCCTCCCTA a score=0.0 s hg17.chr17_random 80053 25 + 2618010 GGAGTCACAGCCCCGTCCGCGCGCC a score=1033.0 s hg17.chr17_random 80053 12 + 2618010 GGAGTCACAGCC s panTro1.chr19 40666564 12 - 82489036 GGAATCACAGCC a score=211.0 s hg17.chr17_random 80065 13 + 2618010 CCGTCCGCGCGCC s panTro1.chr19 41894752 12 + 82489036 CCGCCC-CTCTCC a score=20561.0 s hg17.chr17_random 80078 199 + 2618010 TTGCCCTGTCGGCG-------GGGCACTGGgggcaaaccacttaacctccggactct--gtttccccagctggaaagcagaaacac-----caatgcctacctcgtggggtGGAGGGAGCAGAAACGGAGCCGAGGAAGGGACC---GTGGCTCGGTAGTCTGCAATGTGAGTCAGAGTTTCCCACAAGCTTCCCCAGAAGGGGTCATGACTGTGA s panTro1.chr19 41894764 208 + 82489036 CTGCCCTGTCGGTGGGTCGGTGGGGACTGGggacaaactacttaacctctggactctcagtttccacagctgggaagtggaaacac-----cactgcctacctcgtggggtGGAGGGAGCAGAAACGGAGCCGAGGGCGCGACC---GCGGCTCAGTAGTCTGGAATGTGGGTCCCAGTATCCGACTAGCTTCCCCCGAAGGGGTCTTGGCTGTGA s canFam1.chr9 12545857 207 + 53642819 CCGCCCCATCGGGA-------GGGCTCCCTGGGC-ATCTACCTAACCCCCTGGGCCTCCGTTTCCCCAGGGCAGAAGCGGCCACCTTCCTACGTTCCCTCCTTCGTGGGACTGAGGGAAGGCCGAGGTAGCTCGTGACCTGACCTGGGGGTTTGAGTGGTCCAGGATGTGGGTCCTAG-GTGCCACGAGGTACCAGTGGAGGCGTCGTGCCTGTGA a score=228.0 s hg17.chr17_random 80277 8 + 2618010 ------AATGACTG s canFam1.chr9 12546064 14 + 53642819 CACCGAAACGAGTG a score=11576.0 s hg17.chr17_random 80285 122 + 2618010 --------AGACAATAAAATAG---GAagcatttact-gtttggcttaggctctgtgttaagtgctctcctcattacaaacttgcaaaagttacatacagatg------cagaagc---tgaggcagagaggttaagcagctt s panTro1.chr19 41895004 120 + 82489036 --------GGACAATACAATAG---GAAGCATTTACT-GTTTGGCCTAGGCTGTGTGCTAAGTGCTCTCCTCATTACAAACTCGCAAAGGTTACCTACAGAAG--------GAAAC-CTTGAG--ATGGAGGTTAAGCAGCTT s canFam1.chr9 12546078 140 + 53642819 AGCCGCGTGCGCTATACCGTAGCCAGACGCTTCTCCTCGGCTGGGCCAGACT-TGCGCTCAGCGCTCTCTTCGCGTCCAACTTGCAGAGTTTACCTGCGGAAGGAGGGAAAGGAGCGGTGGAG--GCAGAGGTTAGGCAACTG a score=1077.0 s hg17.chr17_random 80407 16 + 2618010 gcccaagaccacaggg s canFam1.chr9 12546218 16 + 53642819 GCCCGAGACCACACAG a score=1659.0 s hg17.chr17_random 80479 115 + 2618010 ACCTGTGAAGCAGAGAGCCTAGAGCCAAAAATGGATACCTAGAGAAAGATAATTTGTTCTTGTGTGTCCAGCACTCTGTGAGACAAAGCA---CTGAGCCTGAGACACAAGTCTTCTG s canFam1.chr9 12546260 99 + 53642819 GCCGAGGAAGCCGGGGGC-----GCCGACAA--------------ACGAGGAATGGTTCTTCTGAGTCAGGCCCACGAGGAGACTGAGCATTGCCGATGCTGACACACGGGTCCTCTG a score=14690.0 s hg17.chr17_random 81318 162 + 2618010 aaaaa--aaaaaaagtcgggcatggttggtgggtgcctgtaatcccagctaatcgggaggctgaagcaggagaattgcttgagcctgggaggtggagattgcaatgagccaagaccatgccacccactgcactccagcctgggcaactgagcgagacgccgtat s panTro1.chr19 40667829 164 - 82489036 aaaaatcaaaaaaagtcgggcatggttggcgggtgcctgtaatcccagctaattgggaggctgaagcaggagaattgcttgagcctgggaggtggagattgcaatgagccaagaccatgccacccactgcactccagcctgggcaactgagcgagacgccatat a score=71215.0 s hg17.chr17_random 81480 516 + 2618010 caaaaaaaaaaaaaaaaaaaaaaaaaaGCAAGGGAAAACAGcttaggcaagtcactcctctgaggcttattttttttcctgtataaaacaggaatcttaaaatctagtctgtagTCCTG-GCGTTCTCTACCCTCATCCACACAGGGTCTCTG-Ttctcttttacctggctttattctactcggtggcac-ctgtcaccccacattttatacaatgatacgtttattgcattttagcatagtagaatgtaagctccagagcaggaatctttgtcgctt--gttcacttttatatgactggcacc----ctgaacaatgcctggcatatagtagccactcagtatatattttttgaatgaatgaatGaatattaaatatattaatatttCCTACA---ATAGAAAGTGATTAGTAAATCTCCTGGCTTGTGGTAAGTATCATGACCCTGCAGGGCTCACTATTTTACTGCCTCTCTGCTCATTTTCGTGTTTATCAGGCCATCTTTTGCTTGCTAATTTGGTTTCCCAG s panTro1.chr19 40667993 509 - 82489036 caaaaaaaaaaaaaaaaaaT-------GCAAGGGAAAACAGcttaggcaagtcactcctctgaggcttattttttttcctgtataaaacaggaatcttaaaatctagtctgtagTCCTG-GCGTTCTCTACCCTCATCCACACAGGGTCTCTG-Ttctcttttacctggctttattctactcggtggcac-ctgtcaccccacattttatacaatgatacgtttattgcattttagcatagtagaatgtaagctccagagcaggaatctttgtcgctt--gttcacttttatatgactagcacc----ctgaacaatgcctggcatatagtagccactcagtatatattttttgaatgaatgaatGaatattaaatatattaatatttCCTACA---ATAGAAAGTGATTAGTAAATCTCCTGGCTTGTGGTAAGTATCATGACCCTGCGGGGCTCACTATTTTACTGCCTCTCTGCTCATTTTCATGTTTATCAGGCCATCTTTTGCTTGCTAATTTGGTTTCCCAG s canFam1.chr9 12546856 500 + 53642819 CATACGGTATATCGGTGAGAACCAGACGCAGGCCAAAACCTGTCAGGCAGGTCCTTTCTCTGTAGC------CTCCTCGTCTGGAAAGGGAGACTATCAACAGCTGGCAGAGAGTCCTGTGCTTCATCTTCCCTCATCCACCCAGGGCCCCTGCTtctcccttacctggctttcctgtattccacagcacggcgtcacttgacattttatacattta----tttattgccgtttagcctcatagcatgtaagctctagaacggggagcttgttctgtttggtgcacatttatacctccagcgcttccatcgaacagaacgtggcata-------cgctgactatat-ttcattgagtaaacgaatCAGTAGATATTATA-TAATGTGACCCGTACCTATAGAAAGTGACTAGCCAACCTCTGGGCCTGTCGTA---ATCATGACTCTGCCTGG------GTTCTAGTATAGTTCCGCTCCCTTCCACGCTCCTAAGGCCATCTTGTGCTCGCCAATTTAGCTTTGTAG a score=165763.0 s hg17.chr17_random 81996 1831 + 2618010 GTACTG-ttttttgtttttttattttagtagagatgggttctctctatgttgcccaggctgatctcaaactcctgagctcaagcaatcatccttcctcagcctcccaaagtcctggggttacaggcatcagccatcattcccagtcCCCGGTATTGTTTTTGAGTACTTAGGggagccaaggggaaacttccgtctttgccctgtgaaggttcagtgaaaaatcactggcacgaggcagattaacaggagaaaaggcatataattttgtttttaatggtatacatgagagtcttcagagcaaagacccaaagatacagagaaaattgtccgttttaatgcttagggtcaataaagtatggaaggccatgtagaaatatgactggacaagaggacatgctgtaaggagaatacaatgagtggggaaatccctaaggctcctgtctgtccaggttttAttttattttttttcccaacacagtctcactctattgcccaaaccggagtgcagtggcgtgatcatagctcacggtaacctcaaactcctgggctcaagagatcctcccatctcaacctcctaagtagctaggactacaggtgtgtgccaccacacccagcTAAGTTTTTTAAGTTTTTAATTTTTTGTAGAAACAGTGTCTTGCTggccgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcggattacagggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaacatacaaaaaaattagccgggcgcggtggtgggcacctgtagtcccagctacttgggaggctgaggcaggacaatggcgtgaacccaggaggcggaggttgcagtgagccaagatcgcgccactgcactcc--agcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaa--------gaaaGGAACAGTGTCTTGCTATGTTGCCTTTTGAGACTCAAAGTGGAAATTTCTTGAAGCCTTTTTCATCTCTTTGTCTTCAGCCACACTTTCCATGACGAGCTGTTGCTGTCTGTCACTTTCTCCTTTAGACTTTTGCCAGATAGAGgatcttgaactcctggcctcaagcgatcctcctgcctcagcctcccacagtgtgggaattacaggcgtgggccaccatgcctggcctgtccagatccttgttggcttctctgagcatgtattccttccttctgcgtgtcgggcaggatgctctgtggaatgggggtcttatgacctacagtcaaacaaagtaggtcaggtaatttctttgtggccagtttttacagataggacagagggaaaaccagagtaatatttttacacttgcaggctggctttggagaaaagggcttctggtttccatgacctgcctcagggaagagggatttttgtgtctatggctagcttcaggggagaatgggactgggggagtcagagaaaaactttttacttctgaggctgctgctgaggccttcattttagggtattgttttctgagcccACTGTATGCCACTGAGTATCTACATTTTCTTTTCGGTGTTTCAACAATCCCAAATGCagccaggtgcggtggcttacccttgtaatcccagcactttgggaggccaaagtaggaggatcacttgagcctaggagtttgagaccaggttgggcaacatagtgagacctcatctctacaaataataATAATAAAAATAAggccaggtacagtggttcacacctataatcc-tagcactttgggaggccaaggcaggaggaccacttaagctcaggagttcaagacca s panTro1.chr19 40668502 1825 - 82489036 GTACTGtttttttgtttttttattttagtagagatgggttctctctatgttgcccaggctgatctcaaactcctgagctcaagcaatcatccttcctcagcctcccaaagtgctggggttacaggcatcagccatcattcccagtcCCCGGCATTGTTTTTGAGTACTTAGGggagccaaggggaaacttccgtctttgccctgtgaaggttcagtgaaaaatcactggcacgaggcagattaacaggagaaaaggcatataattttgtttttaatggtatacatgagagtcttcagaacaaagacccaaagatacagagaaaattgtccgttttaatgcttagggtcaataaagtatggaaggccatgtagaaatatgactggacaagaggacatgctgtaaggagaatacaatgagtggggaaatccctaaggcccctgtctgtccaggttttAtttta-tttttttcccaacacagtctcactctattgcccaaaccggagtgcagtggcgtgatcatagctcacggtaacctcaaactcctgggctcaagagatcctcccatctcaacctcctaagtagctaggactacaggtgtgtgccaccacacccagcTAAGTTTGTTAAGTTTTTAATTTTTTGTAGAAACAGTGTCTTGCTggctgggcgcagtggctcacgcctgtaatcccagcactttgggaggccaaggtgggcagattacagggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaacatacaaaaaaattagccgggcgcggtggtgggcacctgtagtcccagctacttgggaggctgaggcgggaggatggcgtgaacccaggaggcagaggttgcagtgagccaagatcgcgccactgcacttccgagcctgggcgacacagcgagactgcgtctcaaaaaaaaaaaaaaaaaaaaaaaggaaaGAAACAGTGTCTTGCTATGTTGCCTTTTGAGACTCAAAGTGGAAATTTCTTGAAGCCTTTTTCATCTCTTTCTCTTCAGCCACACTTTCCATGACGAGCTGTTGCTGTCTGTCACTTTCTCCTTTAGACTTTTGCCAGATAGAGgatcttgaactcctggcctcaagcgatcctcctgcctcggcctcccacagtgtgggaattacaggcgtgggccaccatgcctggcctgtccagatccttgttggcttc-----------------tccttctgagtatcgggcaggatgctctgtggaatgggggtcttatgacctacagtcaaacaaagtaggtcaggtaatttctttgtggccagtttttacagataggacagagggaaaaacagagtaatatttttacacttgcaggctggctttggagaaaagggcttctggtttccatgacctgcctcagggaagagggatttttgtgtctatggctagcctcaggggagaatgggactgggggagtcagagaaaaactttttacttctgaggctgctgctgaggccttcattttagggtattgttttctgagcccACTGTATGCCACTGAGTATCTACATTTTCTTTTCGGTGTTTCAACAATCCCAAATGCagccaggtgcgatggcttacccttgtaatcccagcactttgggaggccaaagtaggaggatcacttgagcctaggagtttgagaccaggttgggcaacatagtgagacctcatctctacaaataataataataaaaataaggccaggtacagtggttcacacctataatccgtagcactttgggaggccaaggcaggaggaccacttaagctcaggagttcaagATCA a score=14688.0 s hg17.chr17_random 84344 374 + 2618010 AATCCCAAATGCAACATGTTATTTATCCCATTTTATACTTGATGAAATTGAGGCTGCCTAGACTGACTTCCCAAAATCCTCAGCC-------TTCTGCTTCCTCCTCCCAGAGTATAAAAGGGACCCCCACTTTTGGCTGGCAATTTTATATCTTTATGATCAGTGGATCTTTATTCTCATCCACCTTAGAGGAAAGTGGGtcagggtttataatctccattgaacagatgagaaggctgagtttcaggaaggAAATTCGAGCTAACCAAATTTTCCAAGAGACTGACTTACCTCTG---------------------------------------------------------TGATACATATTG----AAGAAGGTGGAAACCTGAATGCTGAGGATGGAATGTGAAGAGCCTGGCACAATGATTAAGATCACAAGAGGG s canFam1.chr9 12549225 441 + 53642819 aatcccaaagggaaaatgttatctatcatgtttttcacctgaagaaatcgaggctGCCAAGGACCACCGCCCAATATCTTCATTCAGCTTTCTTCCTCTTCCTCCTCTCACAGAATTAAGGGGACCCTTACTCTTGGCTGGTTGTTTTACATCTTGGTTATCGGTGGATCCTTATTCCCATCCACCATGTGAGGACGTGGGtcagggtttatgatctccacttaacagatgggaaaactgagcttca-gaaagagatttgagctaactAGACGCGGAAACAGACTCAGGTGCATATGGCATggcggggagacgcggggcggggcggggggggcgggggggggcggggGTTGCGTTGGCACGCACTGATTTAAGAAGCTGGAAAACACGCTCCCAAGAGCAGAATGTTGGGAGTCTGGCCCATTGTTTAAGATCCAAAGTGGG a score=191449.0 s hg17.chr17_random 85126 2150 + 2618010 ccagccagtgagaccccatctctacaaaaaacaaaaatattagccaggtgtagtggcacacacctgtagtcctacctactcaggaggctgagatgggagaatcgcttgagtccaggcatttgaggttacagtgagctgtgatcacgttactgctctccatcctggacaacagagcgagacgctgtctcaaaaaaaaaaaaaaaa-------TCACAAGGTTATTGGATATCAGGGATCAGCTTGCTGCACTTTACCACCTCTAGGAGCGCTGGGTCATCCCCAAGATCCGATTCTCTCCTTGCAGTAGCAGGGGGCAGCAGAGAGCAGCAAAGCAGCCCTTGCCTCTCAGTTTGTTATGACCTCCCAGCAGGCCAGAGGAAACATCCATTCTGTGcttatttggtttatgagaaaattcaggcccagagagggaaagttcagggtcttccaggtgatggatgacaccaaggctcaaggcccaggcttccaagtgaccacactccatgATGGTGCCTGCTTTCAC--ttttttttttttttttttgagacaggatcctgctctgtccccagggatcaagcaatccttctacctcagcctcctgggaagtgagaagctgagactacaggtatgcgccaccacacctgactactttttaaattttttgtcaagacagggatttccctatgttgcccaggctggtcttgaac-tcctgcctcaaatgatctaccactttggtcttccaaagtgctgagattacaggtgtgagctaccacgcctggATGatttcattcattcagagggcacatttttgttccatatttttagacctcagaaaccaggatgcatcttacatccagtgccaggaaaaagcactacagctgtttaaatgtcagcatc-ttttttttttttctcctttcttcctttctttctgaggggtacataaaataatggtgcctctcacaatccatgacatcctaaacgtcatgaaataCTACAATAAAAGCCTCTGTTTATCTctgtttattaaaccctgtgcttgacaatggattactc---tttttttttttctttgagacaaagacttgctctgtcgcccaagctggactgtagtggcgccatctccctcggctcactgcaacctccacttctgggattcaagcaattctcctacctcagcctcctgagtagctgggattacaggcagcagccaccatacccagctaatttttgtatttttagtagagacggggtttcgccatattggccaggctggtcttgaactcctgacctcaggtgatctgcctgcctcggcgtctcaaagtgctgggattacaggtgttagctaatgtacctggccggattacttcttttaatataccaatacctccaggatggaggtattattacccc-attttgctggtgagtgaactgataatagaggtagagcaattgatcatatctgtacaattaataaTGGAGATGAttttttttgttttttgtttttgagacagagttttgctcttgttgcccagactggagtgcaatggcgcaatctcagctcaccgcaacctccacctcttgggttcaagcgattctcctgcctcagcctctcgagtagctgggattgcaggcatgtgccaccacgcccggctaattttgtatttttagtagagatggggtttctccatattgatcaggctggtctcgaactcccgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggattacaggcatgagccactacgcctggcctta-tttttttttttttaagactgagtcacactctattgctcaggctacagtgcagtggcatgatctcagctcactgcaacctctgcctcctggtttcaagcaattctcctgcctcagcctccagagtagctgggattacaagcgcctgccaccatgcccagctaatttttttttgtaactttagtagacagcatttcaccatattggccaggatggtcccaaactcctgaccttaagtgattcacctgcctcggcctcccaaagtgctaggattacaggcatgagccaccatgaccggctGATTTTTTCTTGTTttttttttttgttttgttttgtttttttctgagacagagtcttgctctgttgcccaggctg s panTro1.chr19 40671626 2129 - 82489036 CCGGCCagtgagaccccatctctacaaaaaacaaaaatattagccaggtgtagtggcacacacctgtagtcccacctactcaggaggctgagatggtagaatcgcttgagtccaggcgtttgaggttacagtgagctgtgatcatgttactgctctccatcctggacgacagagcgagacgctgtctcaaaaaaaaaaaaaaaaaaaaaaaTCACAAGGTTATTGGATATCAG-----------------------------AGGAGCGCTGGGTCATCCCCAAGATCCGATTCTCTCCTTGCAGCAGCAGGGGGCAGCAGAGAGCAGCAAAGCAGCCCTTGCCTCTCAGTGTGTTATGACCTCCCAGCAGGCCAGAGGAAACATCCATTCTGTGCTTATTTGGTCCATGAGAAAATTCAGGCCCAGAGAGGGAAAGTTCAGGGTCTTCCAGGTGATGGATGACACCAAGGCTCAAGGCCCAGGCTTCCAAGTGACCACACTCCATGATGGTGCCTGCTTTCACttttttttttttttttttttgagacaggatcctgctctgtccccagggatcaagcaatcctcctacctcagcctcctggaaagtgagaagctgagactacaggtatgcgccaccacacctgactactttttaaattttttgtcaagacagggatttccctatgttgcccaggctggtcttgaacttcctgcctcaaatgatctaccactttggtcttccaaagtgctgagattacaggtgtgagctaccacgcctggATGatttcattcattcagagggcacatttttgttccatatttttagacctcagaaaccaggatgcatcttacatccagtgccaggaaaaagcactacagctgtttaaatgtcagcatctttttttttttttctcctttcttcctttctttctgaggggtacataaaataatggtgcctctcacaatccatgacatcctaaacgtcatgaaataCTACAATAAAAGCCTCTGTTTATCTctgtttattaaaccctgtgcttgacaatggattactcttttttttttttttctttgagacaaagtcttgctctgtcgcccaagctggactgtagtggcgccatctccctcggctcactgcaacctccacttctgggattcaagcaattctcctacctcagcctcctgagtagctgggattacaggcatcagccaccatacccagctaatttttgtatttttagtagagacagggtttcgccatattggccaggctggtcttgaactcctgacctcaggtgatctgcctgcctcggcgtctcaaagtgctgggattacaggtgttagctaatgcacctggccggattacttcttttaatataccaatacctccaggatggaggtattattacccctattttgctggtgagtgaactgataatagaggtagagcaattgatcatatctgtacaattaataaTGGAGATGAttt------ttttttttttttgagacagagttttgctcttgttgcccagactggagtgcaatggcgcaatctcagctcaccgcaacctccacctcttgggttcaagcgattctcctgcctcagcctctcgagtagctgggattgcaggcatgtgccaccacacccggctaattttgtatttttagtcgagatggggtttctccatattgatcaggcaggtctcgaactcccgacctcaggtgatccgcccgcctcggcctcccaaagtgctgggattacaggcatgagccactacgcctggccTTAttttttttttttttaagactgagtcacactctattgctcaggctacagtgtagtggcatgatctcagctcactgcaacctctgcctcctggtttcaagcaattctcctgcctcagcctccagagtagctgggattacaagcgcctgccaccatgcccagctaatttttttttgtaactttagtagacagcatttcaccatattggccaggatggtcccaaactcctgaccttaagtgattcacctgcctcggcctcccaaagtgctaggattacaggcatgagccaccatgaccgactGATTTTTTCTTGtttttttttttt-ttttgttat-tttttttctgagacggagtcttgctctgttgcccaggctg a score=45062.0 s hg17.chr17_random 88411 528 + 2618010 ttttttttttttctgagatggagtcttgctctgtcacctaggctggagtgcagtggcgctatctcggctcactgcaacctccgcctcccaggttcaagcaattcttctgcttcagcctcctgagtagctgggactacaggcatgtgccaccacactcggctaatttttt-gtatttttagcagaaacggggtttcaccatgttagccaggatggtcttgatctcctgacctcatgatctgcccaccttggcctcccagtgtgctgggattaccacctcgcccagccACTTTGGGTGATCTTAAATGCACAGTCCCAGgccaggcgtggtggctcgcgcctgtaatcccagcactttgggaggccgaggcgggcggatcacttgcaggacttgcttgaaccagggtggcggaggttgcggtgagccaagatcatgccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaacaaaaaatacaataaaaataaaatttaaaaattaaaaaattaaatG s panTro1.chr19 40676965 529 - 82489036 tttttttttcttttgagacggagtcttgctttgttgcccaggctggagtgcaatggtgcaatctcggctcactgcaaccgctgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggactagaggcacgtgccaccatgcttggctaatttttttgtacttttagtagagacagggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatctgcccaccttggcctcccagtgtgctgggattaccacctcgcccagccACTTTGGGTGATCTTAAATGCACAGTCCCAGgccaggcgtggtggcccgcgcctgtaatcccagcactttgggaggccgaggcgggcggatcacttgcaggacttgcttgaacctgggaggcggaggttgtggtgagccgagatcacgccattgcactccagcctgggcaacaagagtgaaactccgtctcaaaaaacaaaaaatacaataaaaataaaattaaaaaattaaaaaattaaatG a score=45139.0 s hg17.chr17_random 88939 275 + 2618010 CACAGTCTCTATCC--CCAAAAGCCT--TCCTGGGCTTCAGAGAATAATCCTCTCACCTGTTCACTCCACCTACTGAGGACACAGTCCTTGGAAGGGTCAGGTAGGATAAT------AATACCAACCTGTAGCTAAACAATTTTATACTTTATCTTT--TATttcccatccattattctatttgatccttataccagctatgtgaaagaaggtaacaagtta----tcacttattcttcaggcaaggaaactgaggtccagacagattagggagggtctccaggattatag s panTro1.chr19 40677494 275 - 82489036 CACAGTCTCTATCC--CCAAAAGCCT--TCCTGGGCTTCAGAGAATAATCCTCTCACCTGTTCACTCCACCTACTAAGGACACAGTCCTTGGAAGGGTCAGGTAGGATAAT------AATACCAACCTGTAGCTAAACCATTTTATACTTTATCTTT--TATTTCCcatccattattctatttgatccttataccagctatgtgaaagaaggtaacaagtta----tcacttattcttcaggcaaggaaactgaggtccagacagattagggagggtctccaggattacaG s canFam1.chr9 12569107 277 + 53642819 CGCAGTCATTAGCCTACCCAGCACCTGCTCCTGGGTTACAG-GAATGATACCTTCCCCTGGCCATTCCACCTACTGAGGAT-----------GAAAATCAGGTAGGAGAATTAAAAAAACACCAGCCTGTAGCTGGATAATTTTCTGCCTTGTCTTGTATATTCCTCACCCattaatccacttagtcctgataccagtcctgc-aaaggaggtaacaagtaaaacccttctaattctacgggcaaggagactgaggcccagg-atgttaggtaggctctctggggtcagag a score=2770.0 s hg17.chr17_random 89214 19 + 2618010 gaagaggtggggtgaggcc s panTro1.chr19 40677769 19 - 82489036 GAAGAGGTGGGGTGAGGCC s canFam1.chr9 41072914 19 - 53642819 GTGGGGGTGACCAAAGGCC a score=63010.0 s hg17.chr17_random 89233 279 + 2618010 ccaggtGGGGGTGGGGACAGACAGAGCCCA-----------CTGCTCCC-ACCACCTCTGTCTCTTCCCACTCAGACC-CCTCTGCCTATAACTGGAACCACCTCACAA---------TGTGGTTACTGCCAGGGCAACTGGGCAGGCCCCGCCTGCTTTGTTGAGGGAGGGAGGCA--TTTTTCCCAAGGCTCCCAGGGAACATCTGCAAAGTACCTTTCTCTCCTGGGTCCTGATCAG--ATAGAAG--ACCTTCCCACCTTAGCTTTGAGTCTCAGTGGGCCCCATGGACAATTCAGCAGTAAA s panTro1.chr19 40677788 279 - 82489036 CCAGGTGGGGGTGGGGACAGACAGAGCCCA-----------CTGCTCCC-ACCACCTCTGTCTCTTCCCACTCAGACC-CCTCTGCCTATAACTGGAACCACCTCACAA---------TGTGGTTACTGCCAGGGCAACTGGGCAGGCCCCGCCTGCTTTGTTGAGGGAGGGAGGCA--TTTTTCCCAAGGCTCCCAGGAAACATCTGCAAAGTACCTTTCTCTCCTGGGTCCTGATCAG--ATAGAAG--ACCTTCCCACCTTAGCTTTGAGTCTCAGTGGGCCCCATGGACAATTCAGCAGTACA s mm5.chr11 101270330 293 + 121648857 CCAGCAGGGTGTGAGAGCAGGCAAAGCCCAAAATGATGCCGCTGCACCCAAACGCTTCTGTCTCCTCCCACCCCGATCACACCTGCCTATTACCCGGACCACCTCACAATGTGGCCACTGTGGCCACTGCCAGGGCAACTGGGCAG--CCCCCCTGTAGTATGGGAAGTGGAGGCCA--TTCTTACCAAGGCTCATGGGGAGCCCCTGTAGG--------TCCTCCAGAGTCTCGAGGAGCAAAAAGAG--ACAGTCTCTCCTCAGCCTGGAGTCTCAGTGGGCCCTGGAGACAATTTGGCAATAAA s canFam1.chr9 41072933 239 - 53642819 TCAGAAGGG-GTGGGGGCAGATGGAGCCCAGGATG------CTGCCCCC-ACCTCCTCTGTTTCCTGTCACTCCCTCC-CCACTCCCTATAACCAGAACCACCTCACAA-----------------------------------------------------TGGGAGGAGGAGGCAGGGTTTTCCTAAGTTGCCTAGGGATTGTCTGTAAACTACCTTTCTCTCC-AAGCCCTGTGAAT--GTAGAAGACACCTTTCCACCT--GCTTTGAGTTTCCATGCGCCC-AGGGACAGCTTCCGAGTCGG a score=7550.0 s hg17.chr17_random 89512 40 + 2618010 GTCTTTTCTCTCTGGCTTCTTTCCCCCACTCTTCCTCAGA s panTro1.chr19 40678067 40 - 82489036 GTCTTTTCTCTCTGGCTTCTTTCCCCCACTCTTCCTCAGA s canFam1.chr9 41073174 40 - 53642819 GGGTGTTCTCTCTGATTTCTTCCTCCCAGCCTTCCCAGGA a score=26499.0 s hg17.chr17_random 89552 314 + 2618010 GGCtttttagtacagatggggtttctccatgttggtcaggctggtctccaactcccaacctctggtgatccgcctgcctgccgcctcccaaagtgctgggattacaggtgtgagccactggcccAAGC-----ttttttttttttttttttttttgagacggagtctcactctgtcgctgaggctggagtgcagtggcgcatctcggctcactgcaagctccacctcctgggttcgcgccattcttctgcctcagcctcccaagtagctgagacgacaggcacctgccaccacgtctggctaatttttttgtactttta s panTro1.chr19 40678107 319 - 82489036 GGCtttttagtacagatggggtttctccatgttggtcaggctggtctccaactcccaacctctggtgatccgcctgcctgccgcctcccaaagtgctgggattacaggtgtgagccactggcccAAGCtttttttttttttttttttttttttttgagaaggagtctcactctgtccctgaagctggagtgcagtggtgcatctccggtcactgcaagctccacctcctggggtcgcgccattcttctgcctcagcctccccagtaactgggaagaaagggacccgccaccacgtctgggtaatttttttgtaatttta a score=64344.0 s hg17.chr17_random 89866 819 + 2618010 gtagagacggggattcaccgtgttagccaggatggtctcgatctcctgacctc--atgatctgccc----gcctcagcctcccaaagtgctgg----gattacaggcatgagccaccgc--gcccATGCttttttttttttttttttttcag--agacaaagtcttgctctgtcacccaggctggagtgcagtggcgcgatctcggctcactgcagcctctgcctcccgggttccagtgattctcctgcctcagcctccttgggtagctgggattacaggtgttcgccaccacgcccagctaatttttgtatttttaaggaggtctcgccaagttggccaggctggtctcgaactcctgacttcaggtgatctgcccgcctcggcctcccaaagcgctgggattacaggcgtgagccactgcgctgggcACTTTAAttctgtctttactttctgagatag--tctcgctcggacgctcaggttggactgcaatggcgtgatctcagctcgctgaaacttccacctcccggattcaagcgattctcccgtctcagcctcccgagtagctgggattattgacgcgcagcaccacgcccggctaatttttgtggtttttgtaTCTTCTGTCTTCTGCTCTTTAGTACCGCATAGAGCCACAGAAGACTAGTGAGTCGAACAAACGGCCCCTCTTGCAGCAGTTGTTGATCACAGGGCTGCCCCCGGTACTCATCCTGTGTCTCTCGTCCAAATCCCCGCTCCTCCCCAGCTATCACCTCTGCCGATGCTGGTGGTTTCCCTGGGTACCGGGAACCAAACTCTCATTCCCCAGGAACCT s panTro1.chr19 40645256 830 - 82489036 gtacacatggggtttctccatgttggtcaggctggtctccaactcccgacctccggtgatccgcccagctgcc---gcctcccaaagtgttgcttgcgattacaggcttgagccaccgcTCACCCTGGCttttttttttttttttttttttggcagacaaactcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcagcctctacctcccgggttccagcgattctcctgcctcagcctcct-gggtagctgggattacaggcgtaggccaccacgcccggctcatttttgtatttttaggg-ggtttcgccatgtcggccaggctggtctccagctcctgacctcaggcgatccgcccgcctcggcctcccaaagcgctgggattacaggcgtaagccaccgcgccgggctCTTTCATTCTGTCtttattttctgagatagagtctcgctcggacgctcaggttggactgcaatggcgtgatctcggctcgctgaaacttccgcctcccgggttcaagcgattctcctgtctcagcctcccgagtagctgggattattgacgggcagcaccacgcccggctaccttttgtggtttttgtaTCTTCTGTCTTCTGCTCTTGAGTACCGCATAGAGCCACAGAAGACTAGCGAGTCGAACAAACGGCCCCTGTTGCAGCAGTTGTTGATCACGGGGCTGCCCCCGGTACTCATCCTGTGTCTCTCGTCCAAATCCCCGCTCCTCCCCAGCTATCACCTCTGCCGATGCTGGTGGTTTCCCTGGGTACCGGGAACCAAACTCTCATTCCCCAGGGGCCT a score=25712.0 s hg17.chr17_random 90685 189 + 2618010 AAG--------------------------TCAGGGTTCCTGCAC--ATTCA--CAGTTATGGGTGGCCCTGGGAGTAACACCTGGCACCCAAACAGATCACCAGAG-TCCACACATAGTCCACCTGCCCTCCCTGCATAAGATCAGCTCTTCTTCCTCCCGATGATAGATCAGGGTCAATGATCCCTGCCAAGATGGCGACTGCTCCAGCCTGCTGGTCC s panTro1.chr19 40646086 215 - 82489036 AAGCCCCCCGTGGCCAGGCCCTTCTCAAGTCAGGGTTCCTGCAC--ATTCA--CAGTTACGGGTGGCCCTGGGAGTAACACCTGGCACCCAAACAGATCACCAGAG-TCCACGCATAGTCCACCTGCCCTCCCTGCGTAAGATCAGCTCTTCCTCCTCCCGGCGATAGATCAGGGTCAATGATCCCTGCCAAGATGGCGACTGCTCCAGCCTGCTGGTCC s canFam1.chr30 30395802 184 - 43165425 --------------------------AGGTTTAAGTTGCTGCACTAATCCATCCAATTACAGTTGGACAAGGGAGTACCAAGAAGTGCCCAAGCAGATTATCTGAATTCCACAAGTAGTCCTCTTTTTATCC-------AGCGCAGCCCTTATACTTTCCTGCT---GATCAGTGCCAATTACCCCTGCCAAGATGGTGACTCTTCTTGCTTGCTAGTCC a score=22649.0 s hg17.chr17_random 90874 269 + 2618010 AACCTGTCCAGCCACAGCTGTAGCTTGAAGGCTTGAAGTTCAATGGGACCCTCTCCTGCTTTCTACAAACTGGTTCCtttatt------tttatttatttgggacggggtctggctctgtcacccaggctggagtgcagtggtgcaatcactgctcactgcagcatccacctcccagcatccatccaccctcct-gcctcagcctctggaatagctggggtacagATAGGCCGCAGCCCGAACAGGGTTTCACTAGGTTGCCTAGGCTCTTTCTTT s panTro1.chr19 40646301 276 - 82489036 AACCTGTCCAGCCACAGCTGTTGCTCGAAGGCTTGAAGTTCAATGGGACCCTCTCCCGCTTTCTACAAGCTGGTTCCTCTAttttcatgtttatttatttgggacggggtctggctctgtcacccaggctggagtgcagtggtgcgatcactgctcactgcagcatccacctcccagcgtccacccatcctcctggcctcagcctctggaacagctggggtacagatacgccccagcccgAACAGGTTTTCACTAGGTTGCCTGGGCTCTTTCTTT a score=5986.0 s hg17.chr17_random 91143 65 + 2618010 TTGTTTGCTTGAACCCAGGAGGCAGAGGCCACTGTGCCCAGCCACTTGGGGTGATCTTAAATGCA s panTro1.chr19_random 19655232 65 + 57627672 TTGTTTGCTTGAACCCGGGAGGCAGAGGCCACTGCGCCCAGCCACTTGGGGTGATCTTAAATGCA a score=12195.0 s hg17.chr17_random 91396 134 + 2618010 gctgaggtaggagaatctcttgaacctgggaggcggaggttgcagtgagccgagattgcgccattgcactccagcctgggcaacaagagtgaaactccatctcaaaaaataaaaaataaaatgaaaataaaaTT s panTro1.chr19 40679969 133 - 82489036 gctgaggtaggagaatctcttgaacctgg-aggcggaggttgcagtgagccgagattgcgccattgcactccagcctgggcaacaagagtgaaactccatctcaaaaaataaaaaataaaatgaaaataaaaTT a score=14851.0 s hg17.chr17_random 91530 95 + 2618010 AAGAGGTAGACGCTAGGCTTGAGTCCAGAATTAGAAATCTCCAGAGCTAGGGTGTTTTCTAAGAAGCCCCTTTGCGTTCTGGGGGCTCAGACCTC s panTro1.chr19 40680102 95 - 82489036 AAGAGGTAGACGCTAGGCTTGAGTCCAGAATTAGAAATCTCCAGAGCTAGGGTGTTTTCTAAGAAGCCCCTTTGTGTTCTGGGGGCTCAGACCTC s canFam1.chr9 12569385 75 + 53642819 aagaggtagatcccaggcttgagcccagtgttctaaatctc--------------------aTTAGCCACCCTGCCTTTTTGGGGGTCAGACCCC a score=268903.0 s hg17.chr17_random 91625 765 + 2618010 AGTGAGGCTTAGTAGGATTTTGTATTTTCTTTCATTCTGACTCAGCACAGACATTTATGGGGGAGATGGAGAGAGGAGAGATTAAGGAGA-------AAAAGGTAATTCCGGAGACCT----AAGTGGGGAGAGATGAGCAGAGGAAGGGTCAGATGATGATGCTGGAACCCTCTGAGGAAGAA---TGGGGGAAAGAAGCCAGAGAGA-------AAAGACTTTACTGCTGAATTGTCCAT-GGGGCCCATTGAGACTCAAAGCTAAGGTGGGAAGGTCTTCTAT--CTGATCAGGACCCAGGAGAGAAAGGTACTTTGCAGATGTTCCCTGGGA------------------GCCTTGGGAAAA-----ATGCCTCCCTCTCTCAACAAAGCAGG----------------CGGGGCCTGCCCAGTTGCCCTGG---------CAGTAACCACATTGTGAGGTGGTTCCAGTTATAGGCAGA-GGGGTCTGAGTGGGAAGAGACAGAGGTG-GTGGGAGCAG-----------TGGGCTCTGCCTGTCCCCACCCCCACCTGGGGCCTCA-------------------TACCATCCCACTATCATGGGTAGTGCCTACCACTGGGAGGCCCGGCGCCGGCAGATGGCTTTGGACCGAAGGAGATGGCTGATGGCCCAGCAG------------------------------------------------CAGCAGGAGCTGCAGCAGAAAGAACAGGTGCATGGGATAGGCTGGGTTCTTCAGGGTCCTCTCTGGA---GCAGGAAGGGAATGGAGAATGGAGAGAGATCCCTAGGAAGCTGCCTACTATTTGGTGAATGCTG-TTTGCTGGGGGTAGGAGGAAAGCAAGGTCATTT-----GGCGTTCTCTCAGATAGACTG s panTro1.chr19 40680197 765 - 82489036 AGTGAGGCTTAGTAGGATTTTGTATTTTCTTTCATTCTGACTCAGCACAGACATTTATGGGGGAGATGGAGAGAGGAGAGATTAAGGAGA-------AAAAGGTAATTCCGGAGACCT----AAGTGGGGAGAGATGAGCAGAGGAAGGGTCAGATGACGATGCTGGAAGCCTCTGAGGAAGAG---TGGGGGAAAGAAGCCAGAGAGA-------AAAGACTTTACTGCTGAATTGTCCAT-GGGGCCCACTGAGACTCAAAGCTAAGGTGGGAAGGTCTTCTAT--CTGATCAGGACCCACGAGAGAAAGGTACTTTGCAGATGTTCCCTGGGA------------------GCCTTGGGAAAA-----ATGCCTCCCTCCCTCAACAAAGCAGG----------------CGGGGCCTGCCCAGTTGCCCTGG---------CAGTAACCACATTGTGAGGTGGTTCCAGTTATAGGCAGA-GGGGTCTGAGTGGGAAGAGACAGAGGTG-GTGGGAGCAG-----------TGGGCTCTGCCTGTCCCCACCCCCACCTGGGGCCTCA-------------------TACCATCCCACTATCATGGGTAGTGCCTACCACTGGGAGGCCCGGCGCCGGCAGATGGCTTTGGACCGAAGGAGATGGCTGATGGCCCAGCAG------------------------------------------------CAGCAGGAGCTGCAGCAGAAAGAACAGGTGCATGGGATAGGCTGGGTTCTTCAGGGTCCTCTCTGGA---GCAGGAAGGGAATGGAGAATGGAGACAGATCCCTAGGAAGCTGCCTACTATTTGGTGAATGTTG-TTTGCTGGGGGTAGGAGGAAAGCAAGGTCATTT-----GGCGTTCTCTCAGATAGACTG s mm5.chr11 20378020 777 - 121648857 AGTGAAGCTTGGTTGCGGTTTGTATTTTCCTTCATCTTGACTCAATACAAATGGTTCCTGGAAGAACAGGGAGAGACACAACCCAGGAGAGTGTTGGGAAAGATAATTCCAAACAGCT-----TGTAAGGAGGGAAGGGCCCTCAGAGGGTCAGGTGCTGCTGCCAGAAACTCCTTGGCCTGTC---TCTTGGCAGACACTAGAAGAGAATAATGTATAAGTTTTATTGCCAAATTGTCTCC-AGGGCCCACTGAGACTCCAGGCTGAGGAGAGACTGTCTCTTTTTGCTCCTCGAGACTCTGGAGGA--------CCTACAGGGGCTCCCCATGA------------------GCCTTGGTAAGA-----ATGGCCTCCACTTCCCATACTACAG------------------GGGGGCTGCCCAGTTGCCCTGGCAGTGGCCACAGTGGCCACATTGTGAGGTGGTCCGGGTAATAGGCAGGTGTGATCGGGGTGGGAGGAGACAGAAGCGTTTGGGTGCAGCGGCATCATTTTGGGCTTTGCCTGCTCTCACACCCTGCTGGAATTTTC-------------------TTTTACCACACCATCATGGGTAGTGCCTACCACTGGGAGGCCCGGCGTCGGCAGATGGCATTGGAACGGAGGAAGGTGCTGATGGCACAGCAG------------------------------------------------CAACAAGAG---------------CAGGTGCAGGAGAGGGGCTTGGTCCATCAGGGTCCACCCTAGG---GCC-TCAGGGAGTGGGGAAGGATGAAGGACTCCCGAGGAGTGGATCACTAGCTTGTGAATGTTG-TCTGCT-GGGGTAGGAGGCAAGCTAGTTCAGTTTTGCGAGAGGTCTCTCACTC---TTT s rn3.chr10 20100014 824 - 110733352 AGTGAAACTCAGTTGAGGTTTGTATTTCCTTTCATCTTGACTCAGTACAAACGGTTCCTGGAAGAATGGAGAGAG-----ACATAGGAGAGTGCTGGGGAAGAAAATTCCAGACAATT-----TGTGAGGAGGGAAGGGCCATCAGTGTGTCAGGAGCTACTGCCGGAAACCCCTTGGCCAGTCTCTTGAGAGATACTAGA---AGAGAAAAATGCACAAGTTTTATTGCCACTCTGTCTTCAGGGGCCTACTGAGACCCCAGGCTGAGGAGGGGCTGTATCTTTTTCCTCCTCAGGACTCTGGAGGA--------CTTACAGATGCTCCCCATGAAGAGCCTAGACCCCCAACACTTCAGTAAAAGGGTGATAAATTCCTTCTCCAGCACCCAGGGGAGTCATCTGCATAACTGGGTACTGCCCAGTTGCCCTGGTAGTGGCCACAGTGGCCACATTGTGAGGTGGTCCGGGTAACAGGCAGGTGTGATTGGGATGGGAGGCAACAGAAGCATTTGGGTGCAGTGGCCTCGTTTTGGGCTTTTCCTGCTCTCACCCCCTGCTGGGATTTTCTTTTTTTTTTTTTTTTTTTTTTTACTACACCATCATGGGTAGTGCCTACCACTGGGAGGCTCGGCGTCGGCAGATGGCATTGGACCGGAGGAAGGCGTTAATGGCACAGCAG---------------------------------------------------CAAGAG---------------CAGGTGCAGGAGAGGGGCTTGGTTTAGCAGGGTCCACCATGGG---GGCAACAGGAAGTGGGGAAGGATGAAGGACTTCCTGGGAGTGGATTGCTAGCTTGTGAGTGCTG-TGTGCT-CGGGTAGGAGGCAAGTGAGCTCAGTT----------TTTCTGTCATAGGCTG s canFam1.chr9 12569460 756 + 53642819 AGTAAGGGTTTGTTGGGTTTTATATTTTCTGTCCTCTTGACTCAGTACAGC--------------AGGAGGAGATGGAAGACTGAGG----------GAAGGGGAAGTCCAGAGAACTTTGGTGGTGGGGAGGAAGGGCACAGCAGAGGGCCTGATGATGATGGTGGAATCCT---GGGAAGGC---TGGGAGGAAGAAATCAGAGAGAAC-----ACCCAGCCGACTCGGAAGCTGTCCCT--GGGCGCATGGAAACTCAAAGC--AGGTGGAAAGGTGTCTTCTACATTCACAGGGCT-TGGAGAGAAAGGTAGTTTACAGACAATCCCTAGGC------------------AACTTAGGAAAA-------CCCTGCCTCCTCC-----------------------------------------------------------------TCCCATTGTGAGGTGGTTCTGGTTATAGGGAGT-GGGGAGGGAGTGACAGGAAACAGAGGAG-GTGGGGGCAG------CATCCTGGGCTCCATCTGCCCCCACCCCTTCTGAGGCCTTTG-------------------GTCACCCCCACCATCATGGGCAGCGCTTACCACTGGGAGGCCCGTCGCAGGCAGATGGCTTTGGACCGGAGGAGGTGGCTGATGGCTcagcagcagcaacagcagaaggaacaggaagagctgcagcagcagcagcagcagcagcagcagcagcagcagGAAGAGCAGGTGCATGAGAGGAGCCAGGTTCATCAGGTTCCTTGCAGAGCTTCCCAGAAGGGAGTGGGGAGGGAAGACAGATGCCTAGGAAGCTG----TGATTTGGTCAATATTGTTTTGCTGAATGTAGGAAGAA----AGGTCCTTT-----AATGTTCTCTTGGGTGGACtg a score=-1526.0 s hg17.chr17_random 92390 61 + 2618010 --------------------TGTCTGTGT---------TGGGGGGACCACTATCA-GCT----GACTCAATTTCCCTCT------TGTAATAGTCTAGGGG--------------------------- s panTro1.chr19 40680962 61 - 82489036 --------------------TGTCTGTGT---------TGGGGGGAACACTATCA-GCT----GACTCAATTTCCCTCT------TGTAATAGTCTAGGGG--------------------------- s mm5.chr11 20378797 53 - 121648857 --------------------TGCCTGGAT---------TG--------ACTAAGA-ACTTCTGGGCTCAGCTTCCA----------GTGACTGTTCAGGGT--------------------------- s canFam1.chr9 12570216 124 + 53642819 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcgtgtgtgggtgtgtgtTTATTAGGGT----AACTCAACTTTGCTTTGTACAATGCTGAGGCCCAGAGGGGGCTCCTGGCCGGTCCAGCCTGAGGG a score=91.0 s hg17.chr17_random 92451 1 + 2618010 A s canFam1.chr9 12570340 1 + 53642819 a a score=864.0 s hg17.chr17_random 92451 12 + 2618010 AAGGCAA---GGGTA s panTro1.chr19 40681023 12 - 82489036 AAGGCAA---GGGTA s mm5.chr11 20378850 10 - 121648857 AGTGT-----GTGTA s rn3.chr10 20100960 15 - 110733352 AGGGCAGAGTATGTA a score=20895.0 s hg17.chr17_random 92463 58 + 2618010 CTAGGCCTGGGAGG-TTTAAAGAtgttctgtccaatagggtaacccccagcctgtatgc s panTro1.chr19 40681035 58 - 82489036 CTAGGCCTGGGAGG-TTTAAAGATGTTctgtccaatagggtaacccccagcctgtatgc s mm5.chr11 20378860 50 - 121648857 TAGGGCCAG---------AAAGTTGTGCTGTCTGATATTGTAGCCCTCAGCCTGCATGC s rn3.chr10 20100975 47 - 110733352 TCTGGCCTG---------AAAGCTGTGCCATCTGGT---GTAGCCCTCAGCCTGTGTGC s canFam1.chr9 12570794 59 + 53642819 CTGAGCCTgagagattttaaagctgcactgttctctcaggtggccaccagcctgtgtgc a score=0.0 s hg17.chr17_random 92521 2 + 2618010 ta a score=546.0 s hg17.chr17_random 92521 1 + 2618010 t s panTro1.chr19 40681093 1 - 82489036 t s mm5.chr11 20378910 1 - 121648857 T s rn3.chr10 20101022 1 - 110733352 T a score=91.0 s hg17.chr17_random 92522 1 + 2618010 a s panTro1.chr19 40681094 1 - 82489036 a a score=4539.0 s hg17.chr17_random 92523 34 + 2618010 tattgagc-----cttggagtgt-----gactgaggaaccaaa---t s panTro1.chr19 40681095 37 - 82489036 tattgagc-----cttggagtgt-----gactgaggaaccaaatttt s canFam1.chr9 12570853 44 + 53642819 tattgagcccattcttgcaatgtggcaagaccaaggaactgga---t a score=79863.0 s hg17.chr17_random 92557 870 + 2618010 ttttttttttttttttgagatggagttttgctcttgttgcccaggctggagtgcaatggtgcaatcttggctcaccacaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccgagtagctggtattacaggcatgcgccaccacgcccagataattttgtatttttagtagagacacggtttctccatgttggtgaggctggtctcaaactcccgacctcaggtgatccacccaactcagcctcccaaagtgctgggattgcaggcatgagccatgatgcccggtcagtgttatataaatttaatttagtttttaaaaaTGTTATTTTggccgggcatggtggctcacacctgtaatccagcactttgggaggccaaggtgggtggatcagttgaggtcaggagttcaagaccagcctggccaacatggcgaaacctggtctctactaaaagtacaaaaagtagctaggcatggtggcgcttgcctggaattccagctacctggggagactgaggcatgagaatcacttgaatcagtgaggtggaggttgcagtgagccaagatagtgccactgcactctgacctgagtgatagagtgagactcttgtctc-aaaaaaaaattaaaaaCtttatttgattttattattgtaatacagacagggtctcactatgttgccctggctggtctggaactcctggactcaagcaatcctcccacctaagtctcccaaaatgttgacaagtgtgaaccaccatgcctggcCtttaattaattaattcacttatttattttattttatttttttGAGATGGAGTCTTGCTCCAGTCTTGCTCCCAGCCGGGCACAGTGGCTCACAC s panTro1.chr19 40681132 870 - 82489036 ttttttttttttttttgagatggagttttgctcttgttgcccaggctggagtgcaatggtgcaatcttggctcaccacaacctctgcctctcaggttcaagtgattctcctgcctcagcctcccgagtagctggtattacaggcatgcgccaccacgcccagataattttgtatttttagtagagacacggtttctccatgttggtgaggctggtctcgaactcccgacctcaggtgatccacccacctcagcctcccaaagtgctgggattgcaggcatgagccatgatgcccagtcagtgttatataaatttaatttagtttttaaaaaTGTTATTTTggccaggcatggtggctcacacctgtaatccagcactttgggaggccaaggtgggtggatcacttgagatcaggagttcaagaccagcctggccaacatggcgaaacctggtctctactaaaagtacaaaaagtagctaggcatggtggcgcttgcctgtaattccagctacctggggagactgaggcatgagaatcacttgaatcagtgaggtggaggttgcagtgagccaagatagtgccactgcactctgacctgagtgacagagtgagactc-tgtctcaaaaaaaaaattaaaaaCTTTAtttgattttattattgtaatacagacagggtctcactatgttgccctggctggtctggaactcctggactcaagcaatcctcccacctcagcctcccaaaatgttgacaagtgtgaatcaccatgcctggcCtttaattaattaattcacttatttattttattttatttttttGAGATGGAGTCTTGCTCCAGTCTTGCTCCCagccgggcacagtggctcacac a score=103526.0 s hg17.chr17_random 93427 1117 + 2618010 TCTGTctctcctggagagagggagattccctttccgggtctgctaagtaacgggtgccttcccaggcactggggccaccgctagaccaaggcctgctaagtaaccagggccttcccaggcactggcattaccgctaggccaaggagccctccagcggcccttctctgggcgtgaatgagggctcacactctcgtcttctggtcacctctcactgtggcccttcagctcctaactctgtgtggcctggtttcccccaaggtaatcataatagaacagagatcattatggtaatagaacaaagagtgatgctacaaactaatgattaataatagtcagatataatcctatccgtttcctatctctagtaaaacttttcttattctaattattttcttcgctgtactggaacagcttgtgccttcaggctcttgcctgggcacctgggtggcttgcggcccacaAGAtaagatacattgcgttgaactataatttatgttgattgctgaatgatttagggcgggggggtgggcaccccctgaaattctgccctggaggagtggcctcaccctaaccctggccgtgGCTAATAATAAGGCCCACCTCTTAGGGCCGTGGAGTGAAATAAGTTTTCCAGGTAATGCGCAGTAGAGCCCTCAGCCCTCCGCTGAAGTTGCGTTAGGAAGGAGGAAGGGAGAGGTAAATGCTGAGCCCGCAGGCGGCAGTCTGTGCCTCGGAGAGAAACTTTATCCCAACCTTGCTGGGGGCCTTGACGCCCACCTTGCCCCAAGAGCACCCCGGCAGCCACCCCTGCCCTCTGGGGTCCTGCCACCCCGAGCCCGACCTTCCCCCTTTTCCCCCGCGCCGGGCCAATAGCCTCCTAACTGCGT-------------------CGTGCTCATCACCTTTGCGTCGtttcttcgctccacaaacgtttactgagcgccttccacacgccaggcgccagactcgcgcggggaaacagggataagcactgaggaggggtcccagccctcagcgatgggatttcagagcgggagataaAGGGTTGCCCAGAAGGGTGGTGAGTGGAATGGCTGATATAAACAACGGGGGCGCGATGAAATACACAGGAGGGCTGCTA s panTro1.chr19_random 2323883 1136 + 57627672 tctgtctcccctggagagagggagattccctttcccggcctgctaagtaacgggtgccttcccaggcactggggccaccgctagaccaaggcctgctaagtaaccagggccttcccaggcactggcattaccgctaggccaaggagccctccagcggcccttctctgggcgtgaatgagggctcacactcttgtctcctggtcacctctcactgtggcccttcagctcctaactctgtgtggcctggtttcccccagggtaatcataatggaacagagatcattatggtaatagaacaaagagtaatgctacaaactaatgattaataatagtcagatataatcctatccgtttcctatctctagtaaaacttttcttattctaataattttctttactatactggaacagcttgtgccttcaggctcttgcctgggcacctgggtggcttgcggcccacaAGATAAGATatattgcgttgaactatagtttatgttgattgctgaatgatttagggcgggggggtgggcaccctctgaaattctgccctggaggagaggcctcaccctaaccctggccgtgGCTAATAATAAGGCCCACCTCTTAGGGCCGTGGAGTGAAATAAGTTTTCCAGGTAATGCGCAGTAGAGCCCTCAGCCCTCCGCTGAAGTTGCGTTAGGAAGGAGGAAGGGAGAGGTAAATGCTGAGCCCGCAGGCGGCAGTCTGTGCCTCGGAGAGAAACTTTATCCCAACCTTGCTGGGGGCCTTGACGCCCACCTTGCCCCAAGAGCACCCCGGCAGTCACCCCTGCCCTCTGGGGTCCTGCCACCCCGAGCCCGACCTTCCCCCTTTTCCCCCGCGCCGGGCCAATAGCCTCCTAACTGCGTCGTGCTCATCACGGTCTGCCGTGCTCATCACCTTTGCGTCGtttcttcgctccacaaacgtttgctgagcgccttccacacgccaggcgccagactcgcgcggggaaacagggataagcactgaggaggggtcccagccctcagcgatgggatttcagagcgggagataaagggttgcccaGAAGGGTGGTGAGTGGAATAGCTGATATAAACAACGGGGGCGCGATGAAATACACAGGAGGGCTGCTA a score=83665.0 s hg17.chr17_random 94544 914 + 2618010 GTCACATATGGGGCAGGTGCCGAGGGCCCTTGACTAA-GGGAGGCTTCCTGCACGGGTGACACCCAAGCGGAGTCCTGACGACCTGCGTCAGAAGTAGCCGGGCGAGGAGGAGGGGAAAGGAATCCACGTCCCGAGCAGAGAGGCAGCGTT-CCCTACACAGCACAGGACACGGTCCGCGCACAGAAGCCGCAGGAGACGCAGGCACAGGGGCTGGGGAGAATCCTTGCTGGGCCCTCGCCGCCTCCCTCTGCCGGGTGTCTGGTGCCAGCCTCCTGCCTGGCAGAGGAACTCCAGCCCCTGCTCCCGGAAGCCCCTCCAGGCCTTCGGCTTCCCTGACTGGGCATGGGCCCCTCGTCCCCTCGTCCCCTCGGGTACGGGGCCGGTCTCCCCGCCCGCGGGCGGCGAAGTAAAGGCCCAGCGCAGCCCGCGCTCCTGCCCTGGGGCCTCGTCTTTCTCCAGGAAAACGTGGACCGCTCTCCGCCGACAGGTCTCTTCCACAGACCCCTGTCGCCTTCGCCCCCGGTCTCTTCCGGTTCTGTCTTTTCGCTGGCTCGATACGAACAAGGAAGTCGCCCCCAGCGGAGCCCCGGCTCCCCCAGGCAGAGGCGGCCCCGGGGGCGGAGTCAACGGCGGAGGCCACGCCCTCTGTGAAAGGGCGGGGCATGCAAATTCGAAATGAAAGCCCGGGAACGCCGGAAGAAGCACGGGTGTAAGATTTCCCTTTTCAAAGGCGGAGAATAAGAAATCAGCCCGAGAGTGTAAGGGCGTCAATAGCGCTGTGGACGAGACAGAGGGAATGGGGCAAGGAGCGAGGCTGGGGCTCTCACCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCGAAGGCGAGCGCatcgcttctcggccttttggctaagatcaag s panTro1.chr19_random 2478187 907 + 57627672 GTCACATACGGGGCGGGTGCCGAGGGCCCTTGACTAAAGGGAGGCTTCCTGGACGCGTGACACCCAAGCGGAGTCCTGACGACCTGCGTCAGAAGTAGCCAGGCGAGGAGGAGGGGAAGGGAATCCACGTCCCGAGCAGGGAGGCAGCTTTTCCCTACACAGCACAGGACACGGTCCGCGCACAGAAGCCGCAGGAGACGCAGGCACAGGGGCTGGGGAGAATCCTTGCTGGGCCCTCGCCGCCTCCCTCTGCTGGGTGTCTGGTGCCAGCCTCCTGCCTGGCCGAGGAACTCCAGCCCCTGCTCCCGGAAGCCCCTCCAGGCCTTCGGCTTCCCTGACTGGGCATGGGCCCCTCGTCCCCTCG--------GGTACGGGGCCGGTCTCCCCGCCCGCGGGCGGCGAAGTAAAGGCCCAGCGCAGCCCGCGCTCCTGCCCTGGGGCCTCGTCTTTCTCCAGGAAAACGTGGACCGCTCTCCGCCGACAGGTCTCTTCCACAGACCCCTGTCGCCTTCGCCCCCAGTCTCTTCCGGTTCTGTCTTTTCGCTGGCTCGATACGAACAAGGAAGTCGCCCCCAGCGGAGCCCCGGCTCCCCCAGGCAGAGGCGGCCCCGGGGGCGGAGTCAACGGCGGAGGCCACGCCCTCCGTGAAAGGGCGGGGCATGCAAATTCGAAATGAAAGCCCGGGAACGCCGGAAGAAGCACGGGTGTAAGATTTCCCTTTTCAAAGGCGGAGAATAAGAAATCAGCCCGAGAGTGTAAGGGCGTCAATAGCGCTGTGGACGAGACAGAGGGAATGGGGCAAGGAGCGAGGCTGGGGCTCTCACCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCGAAGGCGACCGCatcgcttctcggcc-tttggctaagatcaag a score=86378.0 s hg17.chr17_random 95458 1101 + 2618010 tgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGTAGAGGGAGGTAAGAGACGGTAGCACCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACTGCTTCCCTGAAGTACC-----GTGAGGTTCCTGATGTGC-------GGGCGGTAGACGGTAGGCTTATGTGGCACGCTTTCGTTTCCACCGTGGCTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGACCCACCCGGAGTT---CTTCTTTCTCCTGtctctctctctctctctctctttctctctctctctctctgtctctccgtctctctgtgtctgtctctgtctctctgtctctctctctgtctctctctctctctctctctctctcactctctctctcctctctctgtctctctctctctttccctctctctctctctttcCCCCCCCCGCCTCTCCCTCG----CTCTTTTGGTTTCCCCCACCCCCTCCCaagttctggggtacatgtgcaggacgtgcaggtttggaacataggtacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcatgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcgctgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggtcatgaactcatccttttttatggctgcgtagtaattccatgctgtatacgtgccacactttctttatccagcctatcattcatgggcattcgag s panTro1.chr19_random 55519042 1026 - 57627672 tgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGCAGAGAGAGGTAAGAGACAGTAGCATCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACCGCTTCCCTGAAGTACCAGTGAGGGAGGTTCCTGATCTGCAGGCGGTGGGCGGTAGACGGTAGGCTTATGCGGCACGCTTCCGTTTCCACCGTGACTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGATCCACCCGGAATTGAACTtctttctcc--tctctctctctctctctctctctctctctctctctctctttc----------------------------------tctctctctcggtctctttctctctctct-------TCAC---------------------------------------------------CCCCCCCCCCGCCTCTCCTCCGTTCTCTCTTTTGGTTTCCCCCACCCCCTCCCaagttctggggtacatgtgcaggacgtgcaggtttggaacatagatacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcacgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcactgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggacatgaactcatccttttttatggctgcgtagtaattccatggtgtatacgtgccacactttctttatccagcctatcattcatgggcattcgag a score=8112.0 s hg17.chr17_random 96559 100 + 2618010 ttggttccaagtc---tttgctattgtaaatagtgctgcagtaaacatacgtgtccacgtgtcttcctagtaggaACTTCTTCCTCTTCAGCCCGCTGAGTAG s panTro1.chr19 41841799 100 + 82489036 ttggttccaagtccccttt---attgtaaatagtgctgcagtaaacatacgtgtccacgtgtcttcctagtaggaACTTCTTCCTCTTCAGCCCGCTGGGTAG a score=53522.0 s hg17.chr17_random 96759 577 + 2618010 GATGAGTACCGGGGGGCAGCCCCGTGATCAACAACTGCTGCAAGAGGGGCCGTTTGTTCGACTCGCTAGTCTTCTGCGGCTCTATGCGGTACTAAAGAGCAGAAGACAGAAGAtacaaaaaccacaaaaagtagccgggcgtggtgctgcccgtcaataatcccagctactcgggaggctgagacaggagaatcgcttgaacccgggaggcggaagtttcagcgagccgagatcacgccgttgcagtccaacctgagcgtccgagcgagactctatctcagaaaataaagacagaatgaaaGagcccggcgcggtggcttacgcctgtaatcccagcgctttgggaggccgaggcgggcggatcgcctgaggtcaggagctcgagaccagcctggccgacatggcgaaaccccctaaaaatacaaaaattagccgggcgtggtggcctgcgcctgtaatcccagctacccaggaggctgaggcaggagaatcgctggaacccgggaggtagaggctgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcgagagtttgtctg s panTro1.chr19 41843054 576 + 82489036 GATGAGTACCGGGGG-CAGCCCCGTGATCAACAACTGCTGCAACAGGGGCCGTTTGTTCGACTCGCTAGTCTTCTGTGGCTCTATGCGGTACTCAAGAGCAGAAGACAGAAGAtacaaaaaccacaaaaggtagccgggcgtggtgctgcccgtcaataatcccagctactcgggaggctgagacaggagaatcgcttgaacccgggaggcggaagtttcagcgagccgagatcacgccattgcagtccaacctgagcgtccgagcgagactctatctcagaaaataaaGACAGAATGAAAGagcccggcgcggtggcttacgcctgtaatcccagcgctttgggaggccgaggcgggcggatcgcctgaggtcaggagctggagaccagcctggccgacatggcgaaaccccctaaaaatacaaaaatgagccgggcgtggtggcctacgcctgtaatcccagctacccaggaggctgaggcaggagaatcgctggaacccgggaggtagaggctgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagcaagagtttgtctg a score=13063.0 s hg17.chr17_random 97336 145 + 2618010 gaaaaaaaaaaaaaaaaGCCAGGGTGAgcggtggctcaagcctgtaatcgcaagcaacactttgggaggcggcagctgggcagatcaccggaggtcgggagttggagaccagcctgagcaacgtggagaaaccccatctgtacta s panTro1.chr19 41843637 145 + 82489036 aaaaaaaaaaaaaaaaaGCCAGGGTGAgcggtggctcaagcctgtaatcgcaagcaacactttgggaggcggcagctgggcggatcaccggaggtcgggagttggagaccagcctgaccaacatggagaaaccccatgtgtacta a score=599587.0 s hg17.chr17_random 97481 6907 + 2618010 aaaatacaaagttagccgggcgtggtgg-cacatgcctgtagtcccagctgctcgggaggctgaggcaggggaatcgcttgaacccgggaggcggagg-ttgcagagagcctagatcgcgccattggactc-caggctgggtaacaagagcggaacctccgtctgaaaaaaaaaaaaaaaaaaaaaaaaaaTTGGGAGAAttttgctcccactgccgtcaaaatcccatgtgtatttcacacttaacagcgcagctccattagaactgaccacatttccagggctccctagatacctgtggctagcggctgccatactacaccgtgcTGGGCTGTAGAATGGGGATGACAAGACAGGGCGGCGGAGATTGTGTTGGCGTGAAGCGAGGGAAACACTCGGCCGCAGGACAAAACTAAAACAGCAAGGGGGCACCGAAAGACTCAGTAGTCCACGTGAATATCCTGATTATGTTGTAGCTGAGATAAtgtagggtccacccctaccgggtctgtgggttttctcttcgcgtgtgt--gcggagacgagagatcgaagagataaagacagaagacaaagagataggaagaaagacagctgggcccgggggaccactgccaccaaagcgcggagacagacaggtagtggccccgagtgcctggaggcgctgctatttattgtagtcaaggcaagggggcagggtaaggagtgccagtcatctccaatgatcgataggtcacgcgagtcacgtgtccactggacagggggcctttccctttgtggtagccgaggtggagagggaggacagcaaacgtcagcgtttcttctatgcacttatcagaaagatcgaagactgtggtactcctactagttctgctactgctgtcttctaagaacttaaaaggaggagccaggtgtacaggctgaacatgaaagtgaacaaggagcgtgaccactgaagcacagcatcacagggagacagacgttggagcctccggatgactgcgggccggcctggctaatgtcagacctcccacaagaggtggtggagcggagcgttctctgtctcccctggagagagggagattccctttccgggtctgctaagtaacgggtgccttcccaggcactggggccaccgctagaccaaggcctgctaagtaaccagggccttcccaggcactggcattaccgctagaccaaagtgttctaaataacaggtgccttccgaggaagaggcactaccacaagaccatggagccctcaagcagccgttatccgggcatgacagagggctcatactcttgtcttctggttacctctcacattgt--cccctctacttcttactctgtatggcctgttttttcctcgg----ttataat-------------------------aacaaagattaatactaaaaactaataattgataatatccatatgtaatcatctctgtatcctatgtctgatataactttcttttatcct----attttctttattatattggaacagcttctgcgttcagtgtcttgccttggcatctggatggcttTCtgtagggtgcagccctacagggcctgtgggtttttctgtatgtgtgcggagacaatagatcatggaaataaaaacaccggacaaagagatagtagaaaacacagctgggcccacgggaacactaccacgaaaactcggagaccggtagtggccctgaaggcctagctacgctgttatttattgtatacaaggcaagggggcatggtaaggagtgcgagtcatggccaatgataggtaagggcacgcgagtcatgcatccactgtacagggggcccttccctgtttggtagccgaggcagagacagagaggggagagcttacgtcattatttcttctttgcatttcttgggaagatcaaagactctaatactttcactaattgtgctgctgctatccagaaggcggggccatgtgcacagagcggaaaatgaaagtggaccaggaccactgaagcacagcatcacagggagacgtttaggtctccggatgcctgcaggcatggttgcaggcgggtctgactaatgtcaggccttccacaagaggtggtggagcagagtcttctcttact-ccgcagggaaaggcagagtccctttcctggtctgctaagtaacgggtgccttcccagacactggcgttaccgcttcaccaaggagccctcctagtggccctgcccgggcatgacagagggctcacactcttgtcttctggtcacttctcaccatgttccttcagctcctatctctgtatggcctagattttcctaggttataattgtagaacagagattattatattggaataaagagtaatgctacaaac---tgattaataatattcacatataatcacatataatcctatctatattctatttctagtatgactattcttattctaaatattttctttattatactggaacagctcgtgctctccgtctcttgccttgggacgtcggtggcttaccacccacatctccccactttttattgactaggatcatcattgccatcattgcttgtcgttgacttgggacttgtcctcggcctccttggagacatctgcagactaaaagtagacaacataaacataccagtattaataatgccaatgacaacgatgatcctccgaggggtttgatccatttaaagggattaagatcagataatcctttagttattccttcaaaactgcccaaggcaggagcagtagttaaatgagcctgtgaggcctcaaaaacgtgttctttaggttttgaaatatctaaggttaagttatcatcccaggcttttaaatgtcttgagacttcttccccactatgttgatctttattataaacataaggttttatgcaataatcagaagtattccaatcgcactgtaattgcatatggtgttccagattcataactctatctcccagtcagattacactctggtggagataattaatttgattagccaatttttgatcaacttgagcatgagaatttcagagtttggtggagttttttttgccatgcttccacatattgagcggtttgaacagagttgtggatagcaactccaacggttgtcgctgttgcagtaatggcaattagtcctgcaatgactgcaataagagtaaaaatgaatctcttggttcttttgaggatacccttaagaagttcactgactatgtgtatagagggggaagacttccatggatgatgtaaagaaattatatccatacccccttcctagcccttatcaaaagaatacttgttctgggattaaaagtagcatcgatacacgtgaacagcttacaatcattacattctatagtttgtgtattgggagtaataattataattccaactagcagcatgtaaggggatttgacacagctcctgatatgtatcacctgtcctgacatcaaggtgatcttgaatatgagtgtcttggtattagtaggagagatttgataggtagcgttccatatccttattcctgtcatggctgcagctaatttccctaattcaggatgttcaggggtaacaatttgatgaatcatttttggtctaggaggaacgattcctgtgttcctccatttgaatggataagg-ggcacccattccctcaacctgtagaattgccatcagtcctttacataatctaacaaataattaaactccaagcatttggcattttagccagagcaatttctccaataataccctcttggggcccagtcaataacagcacccatagctagattttggaacactacggcctttggagcattacaatcattccataaaattgaatttagtagaaaatgtccctttgtaggttcctttgagcagtctggcaatccttttgttttattgcttttagtagtgacaggaactctccattcctcatgtggattaagtttaacattcatgag-ttgaaaagaattgctcctgcacttgataagaatcattactagaggactgtatggtccacatcgaattctgataagaataagctaagcagccaggcaacattccaatacacagtggtggatatttgtagccaattgacaaattaaagtgcataccttttacttctggttgagctggaaacctgtcatcattggggactggcatgaagacactattattagtgtaaacttccactgaggagtccatccaggagacagaccgaattaaagggggaaaaggaatgtatgcccagtaggtataattttgagttgccccaacccctggtatactcaccactgcactgaccaccataaaggcagccagaattatattacccgtcacttttggaattcctttttcttgtagttatttctctgtttgatgggataagacctttatctggccccatgttggtagagtagaatgactggtgttggaggtcacacggtgagattttgttgtaatgtcgaggtcatggaatttatgtgtcaggtggcaaaacttgctctttgatttctgaggcttctttgccttttgtttctgagagttcttcatccttggagttaaaatgcaatctcagttgatgggagggaacccacacgggttgttgtccttctcctggggaaacacaagcgaaacccctaccccatgttaccacagtgcctaattcctatttgtcagtttttgtatccttccaccatacccactttcctttttgtggatcaaatctgtttccagtgaaatgttgttctgctgctgtaaaaggttgatttcttgctaggtttaagaaattgagtgtaaaaagaacaaaatttaactgagtatg-ggggtaggagcatccttcttctctttagtgtcctgttttcaaagttggtctttcagcattttattaactcgttctaccaatgcctgtccttgacagttatagggaatgccagttgtgtgagtaattccccatgtctgagtgaactttttaaaatcattgctaatgtaaccagaaaattgtcagtttttagtttctcaggacatcccataaccaagaaacatgaaaccatgtgctgtttaacatgagccgtactttcccccgtttgacatgtggcccagataaaatgagaaaaagtgtcaatagttacatgcataaaagagagtttgctgaaagctggataatgagtcacgtccatttgccagagaatattttgtgaaagtcctctagggttaactcctgaagaaagtggatgtaaaattaacacttggcaagtaggacagtgacatacaatggttttagcttgcttccatgtgaagcagaacttttttccgagtcccgcagcattgacttgagttacagcgtgaaaattttctacgtccataaaaatgggagcaactaatgtatcagcgctggcatttgctgctgagagaggtcggggaagggcatgtgagcccgaacgtgagtaatgtagaagggagaagaccttgctctgagtagggactgaaacttttggaaaagaaaaagtggttatcatcaggcagaaatgtgtttaaggcagtttcaatgttgcaagcaacacctgctgcgtacaccaaatcagaaactatgttaactggttcagggaaatattcaagaacagccatgacagcagtcagctcagcttgttgtgctgaagtagctcctgagttaaggacacattcttttggccctgcatatgctccttggtcattacaggaagcatcagtaaaaacagtgacagcttcagctaatggagtatccatagtaatgttaggtaagatccaagaagtaagtttaaggaactgaaatagttttacattaggataatgattgtcaattatacccaggaaacctgccaaatgtacttggcaagcaatgcaggttgcaaaagcctgttggacttgtaatcaggtgagggaaacaatgattttttggggctctgtacccaaaagatgaagaaggtgagaaagagcttgaccaattaggatagaaatttgatctagataaacggtaagcgtccgtaaagagctgtgtggaagaaagcactattcaattaaattatgtccctggataatgagtcctgttggtgaatgtttagtaggaaagattagtatttcaaaaggtaaatatggattcgccctggttacctgagactgttgaatgcgtttttctataagttgtaattcagaatctgcctcaggggtcaaagaccttttgttgcataaatcaggattgccccataatgttgcaaacagattagacatagcatatgtaagaatgcctaaggaggggcaaatccaattaatatctccaagcattttttggaaatcatttagcgtttttagagagtctcatctgagttgaaccttttggggcttaataaccttgtcttctagctgcattcctaaatattgataaggagaagaagtttggattttttctggagcgacagccaaaccagctgttgcaactgcttgtcgtactgcagagaaacaagatattaatacagaacgtgaaggcactgcacaaagaatatcatccatgtaatgaatgataaaaaattggggaaattgatctcttactggctttaatatgctccccacgtaatattgacaaatggtaggctattaagcattccctgaggtaggactttccaatggtaacgtgctgtgggagcgatgttgttaagggttggaactgtgaaagcaaatttttcaaagtcctgaggggccagaggaatgttgaagaagcagtctttaagatcaatgatgataagaggccaatacttgggaatcatagcggggaaaggcaagctgggttgtaatgtccccataggctgaaggacagcacttactgccctaagatcagtaagcattctccacttaccggatttcttttggataacaaagacaggt s panTro1.chr19 41852252 6875 + 82489036 aaaatacaactttagccgggcggggtgggcccaagcctgtatttccagctgctcggaggggtggggcaggggaatcggttgaacccgggagggggagggttgcggagagcttaaatcgcgccatttgactctcaggctgggtaacaagagggaaacctccgttt----------aaaaaaaaaaaaaaaaaTTGGGGGAATTTTGCTCCCACTGCCGTGAaaatcccatgtgtatttcacactta-cagcacagctccattagaactgaccacatttccagggctccctagatacctgtggctagcggctgccatactacaccgtgcTGGGCTGTAGAATGGGGATGACAAGACAGGGCGGCGGAGATTGGGTTGGCGTGAAGCGAGGGAAACACTCGGCCGCAGGACAAAACCAAAACAGCAAGGGGGCACCGAAAGACTCAGTAGTCCACATGAATATCTTGATTATGTTGTAGCCGAGATAAtgtagggtccacccctaccgggtctgtgggttttctcttcgtgtgtgtgcgcggagacgagagatcgaagagataaagacagaagacaaagagataggaagaaagacagctgggcccgggggaccactgccaccaaagcgcggagacagacaggtagtggccccgaatgcctggaggcgctgctatttattgtagtcaaggcaagggggcagggtaaggagtgccagtcatctccagtgatcgataggtcacgcgagtcacgtgtccactggacagggggcctttccctttgtggtagccgaggtggagagggaggacagcaaacgtcagcgtttcttctatgcacttatcagaaagatcgaagactgtggtactcctactaattgtgctactgctgtcttctaagaacttaaaaggaggagccaggtgtacaggcggaacatgaaagtgaagaaggagcgtgcccactgaagcacagcatcacaggg----agacgttggagcctccggctgactgcgggccggcctggctaatgtcagacctcccacaagaggtggtggagcggagcgttctctgtctcccctggagagagggagattccctttcccggcctgctaagtaacgggtgccttcccaggcactggggccaccgctagaccaaggcctgctaagtaaccagggccttcccaggcactggcattaccgctaggccaa-----------------------------------------------------ggagccctccagcggcccttctctgggcgtgaatgagggctcacactcttgtctcctggtcacctctcac--tgtggcccttcagctcctaactctgtgtggcctggtttcccccagggtaatcataatggaacagagatcattatggtaatagaacaaagagtaatgctacaaactaatgattaataatagtcagatataatcctatccgtttcctatctctagtaaaacttt-tcttattctaataattttctttactatactggaacagcttgtgccttcaggctcttgcctgggcatctggatggcttTCtgtagggtgcagccctacggggcctgtaggtttttctgtttgtgtgcggagaaaatagatcatggaagtaaaaacacaggacaaagaga----agaaaagactgctgggcccacgggaacactaccacgaaaactcggtgaccggtagttgccctgaaggcctagctacgctgttatttattgtatacaaggcaagggggcagggttaggagtgcgaatcatgtccaatgataggtaagggcacgtgagtcatgcgtccactgcacagggggctcttccctgtttggtagccgaggcagagacagagaggggagagcttatgtcattatttcttctttgcatttcttggaaagatcaaagactctaatactttcactaattgtgctgctgctatccagaaggcggggccatgtgcacagagctgaaaatgaaagtggaccaggaccactgaagcagagcatcacacggagacgtttaggcctccggatgtctgcaggcatggttgcaggtgggtctgacttatgtcagtccttccacaagaggtggtggagcagagtcttctctaactcccgcagggaaaggcagagtccctttcctggtcagctaagtaac-ggttccttcccagacactggggttaccggttgaccaaggagccctcctagtggccctgcccgggcatgacagagggctcacactcttgtcttctggtcacttctcaccatgttccttcagcttctatctctgtatggcctagtttttcctaggttataattgtagaacagagattattatattggaataaagagtaatgctacaaactaatgattaataatattcacatataatcacatataatcctatgtatattctatttctagtatgactattcttattctaaatattttctttattatactgaaacagctcgtgctctccgtctcttgcctcggcacatcggtggcttaccacccacatctcccccctttttattgactaggatcatcattgccatcattgcttctcgttgacttgggacttgtcctcggcctccttggagacatctgcagactaaaagtagacaacataaacataccagtattaataatgccaatgacaacaatgatcctccgaggggtttgatccatttaaagggattaagatcagataatcctttagttattccttcaaaactgcccaagccaggagcagtagttaaatgagcctgtgaggcctcaaaaacgtgttctttaagttttgaaatatctaaggttaagttaccatcccaggcttttaaatgtcttgagacttcttccccgctatgttgatctttattataaacataaggtcttatgcaataataagaagtattccaatcgcactgtaattgcatatggtgttccagattcataactctatctcccagtcagattacactctggcggagataattaatttgaatagccaatttttgatcaacttgagcatgagaatttcagagtttggtggagttttttttgccatgcttccacatattgagcggtttgaacagagttgtggatagcaactccagcggttgccactgttgcagtcatggcaattagtcctgcaatgactgcaataagagtaaaaatgaatctcttggttgttttgaggatacccttaagaacttcactgactatgtgtatagagggggaagactcccatggatgatgtaaagaaatgatatccatacccccttcctagcccttatcagaagaatacttgttctgggattaaaagtagcatcgatacacgtgaacagcttacaatcattacattctgtagtttgtgtattgggaataataattataactccaactagcagcatgtagggggatttgacacagctcctgatatgtatcacctgtcctgacatccaggtgatcttgaatatgagtgtcttggtattagtaggagagatttgataggtagcgttccgtatccttattcctgtcatggctgcagctaatttccctaattcaggatgttcaggggtaacaatttgatgaatcatttttggtctaggaggaacgattcccatgttcatccatttaaatggataaggaggcacccattccctcaacctgtagaattgccatcagtcctttacataatctaacaaataattaaactccaagcatttggtattttagccagagcaatttctccaataataccctcttggggcccagtcaataacaacacccgtagctagattttggaaccctacagcctttggagcattacaatcattccataaaattgaatttagtagaaaatgtccctttgtaggttcctttgagcagtctggcaatccttttgttttattgcttttagtagtgacaggaactctccattcctcatgtggattaagtttaacattcatgagcttgaaaagaattgctcctgaacttgataagaatcattactagaggactgtatggtccacatccaattctgataagaataagctaagcagccaggcgacattccaatacacagtggtggatatttgtagccaattgacaaattaaagtgcatactttttacttctggttgagctggaaacctgtcatcgttggggactggcatgaaggcactattattggtgtaaacttccactgaggagtccatccaggagacagaccgaattaaagggggaaaaggaatgtatgcccagtaggtataattttgagttgccccaacccctggtatactcaccactgcactgaccaccataaaggcagccagaattatattacccgtcatttttggaattcctttttcttgtagttatttctctgtttgatgggataagacctttatctggccccatgttggtagagtagaatgactggtgttggaggtcacacggtgagattttgttgtaatgtcgaggtcatggaatttatgtgtcaggcggcaaaccttgctctttgatttctgaggcttctttgccttttgtttctgagagttcttcatccttggagttaaaatgcaatctcagttgctgggagggaacccacacgtgttgttgtccttctcctggggaaacacaagcgaaacccctaccccatgttatcacagtgcctaattcctatttgtcagtttttgcatccttccaccatacccgctttcctttttgtggatcaaatctgtttccagtgaaatgttgttctgctgctgtaaaaggttgatttcttgctaggtttaagaaattgagtgtaaaaagaacaaaacttaactgagtatgaggggtaggagcatccttcttcgctttagtgtcctgttttcaaagttggtctttcagcattttattaactcgttctaccaatgcctgtccttgacagttatagggaatgccagttgtgtcagtaattccccatgtctgagtgaactttttaaaatcattgataatgtaaccagaaaattgtcagtttttagtttctcaggacagcccataaccaagaaacatgaaaccatgtgctgtttaacatgagccgtactttcccccgtttgacatgtggcccagataaaatgagaaaaagtgtcaatagttacatgcataaa--agagtttgctgaaagctggataatgagtcacgtccgtttgccagagaatattttgtgaaagtcctctagggttaactcctgaagaaagtggatgtaaaattaacacttggcaagtaggacagtgacatacaatggttttagcttgtttccatgtgaagcagaacttttttccgagtcctgcagcattgacttgagttatagcgtgaaaattttctacgtccataaaaatgggagcaactaatgtatcagcgctggcatttgctgctgagagaggtcggggagggacatgtgagcccgaacgtgagtaatgtagaagggagaagaccttgctctgcgtagggactgaaacttttggaaaag-aaaagtggttatcatcaggcagaaatgtgtttaaggcagtttcaatgttgcaagcgacacctgctgcgtacaccaaatcagaaacaatgttaactggttcagggaaatactcaagaacagccatgacagcaatcagctcagcttgttgtgctgaagtagctcctgagttaaggacacattcttttggccctgcatatgctccttgatcattacaggaagcattagtaaaaacagtgacagcttcagctaatggggtatccatagtaatgttaggtaagatccaagaagtaagtttaaggaactgaaatagttttacattaggataatgactgtcaattatacccaggaaacctgccaaatgtacttggcaagcaatgcaggttgcaaaagcctgttggacttgtaatcaggtgagggaaacaatgattttttggggctctgtaccctaaagatgaagaaggcgagagctagcttgaccaattaggatagaaatttgatctagataaacggtaagcgtccgtaaagagctgtgtggaagaaagcactattcaattaaattatgtccctggataatgagtcctgttggtgaatgtttagtaggaaagattagcatttcaaaaggtaaatatggattcgccctggttacctgagactgttgaatgcgtttttctataagttgtaattcagaatctgcctcaggggtcaaagaccttttgttgcataaatcaggattgccccataatgttgcaaacagattagacatagcatatgtaagaatgcctaaggaggggcaaatccaattaatatctccaagcaatttttggaaatcatttagcgtttttagagagtctcatctgagttgaaccttttggggcttaataaccttgtcttccagctgcattcctaaatattgataaggagaagaagcttggattttttctggagcaacagccaaaccagctgttgcaactgcttgttgtactgcagagaaacaagatattaatacagaacgtgaaggcactgcacaaagaatatcacccatgtaatgaatgataaaaaattggggaaattgatcttttactggctttaatatgctccccacgtaatattgacaaatagtacgctattaagcattccttgaggtaggactttccaatggtaacgtgctgtgggagcgatgttgttaagggttggaattgtgaaagcaaatttttcaaagtcctgaggggccagaggaatgttgaagaagcagtctttaagatcaatgatgataagaggccaatacttgggaatcatagcggggaaaggcaagctgggttgtaatgtccccataggctgaaggacagcacttactgccctaagatcagtaagcattctccacttaccggatttcttttggataacaaagacaggt a score=9492.0 s hg17.chr17_random 154497 115 + 2618010 CCAAACTCGGGATCCTGCTGTGGACGCCTGGGTTCCAGGGTCGGGATCCTGCTGTGGAGGCCTNGGTTCCAGAGTCGGGACCCCTTTGTGAACACCTGGGTTCCAAGCTCGGGAT s panTro1.chr19 82360075 115 - 82489036 CCAAACTCGGGATCCTGCTGTGGACGTCTGGGTTCCAGGGTTGGGATCCCTCTGTGAACACCTGGGTTCCAGATTCGGGACCCCTCTGTGAACACCTGGGTTCCAAGCTCGGGAT a score=1155.0 s hg17.chr17_random 154703 12 + 2618010 GGAGTCCATCTC s panTro1.chr19 82360280 12 - 82489036 ggagtccatctc a score=922.0 s hg17.chr17_random 154715 5 + 2618010 TAGCC s panTro1.chr19 82360292 5 - 82489036 tagcc s canFam1.chr9 38036755 5 + 53642819 tagtt a score=101616.0 s hg17.chr17_random 154720 828 + 2618010 ACGGGGCCCTGCAGAAGGCTGctgtgcctcagtttccccatctgtaaaatg-gcagtagac----------ctgctcgtggacctgtggtgagTCCCCCTGTCTGGC-TGTCGTGTCTGCTCACTGGCTGCTGCTTGTGGTTGCTTGTT----------------------------------------------------------------------------------------AGGTG---------TGGTTCCTACAGGCCCTTGCAGGTCTGTGTAGACTCAGAGGAGTCGCGGGGCAGAAAGGAGCTTTGGGGAT-GGAAGCAC-CAGACCAGTGAAAAGAGAAGCAGCGGATTCGACG--TGGCCAC----------------------------ACGGGGCCAGGAAGTCCC--CAGAGATCATGCCTAGCTCCGTCTTCCAGGTCCTGAAACTTTATCTAAGGACCTCAGCAAGCACTTGGTAGCATAAAGAGA--GGGTGGTGGGGCATGGGGCCCTCCTGGCTGAGAGTGCCTTTCGGAGAAGGGGCCTGCCCCTNGNANTGG-NAGCATTTCTCAGATCTGAACCCTGACAGATGGGCCACCAGGGGACCCTGGAAGACTGAACTCCTGTCTCCCACTacacacacatg-tacacacacacacgcatgagcacacat---------------------------acacacTGACATTCTCCTCACCCTGAGTAACACAGGATCTGTGAACACCAATTCTAGTCATTTCAgtgtgtgtacagctgtgtgagtgtgtgtacagctgtgtgtgtacagctgtgtgtgtgtacagctgtgtgtgtgtacacctgtgcctgtg----tgggtgtgcacctgtatgtgcctgtgtgggtgtgccttttagggtgtgtacacctgtgtgggtgtgCATCTGGAATGGTGTGTGAACGCACAT-------GTGGTCTCAGGTACACATATG--CATGTGTGTGCACACAT s panTro1.chr19 82360297 794 - 82489036 acggggccctgcagaaggctgctgtgcctcagtttccccatctgtaaaatg-gcagtagac----------ctgctcgtggacctgtggtgagTCCCCCTGTCTGGC-TCTCGTGTCTGCTCACTGGCTGCTGCTTGTGGTTGCTTGTT----------------------------------------------------------------------------------------AGATG---------TGGCTCCTACAGGCCCTTGCAGGTCTGTGTAGACTCAGAGGAGTCGGGGGGCAGAAAGGAGCTTTGGGGAT-GGAAGCAC-CAGGCCAGTGAAAAGAGACGCAGTGGATTCGACG--TGGCCAC----------------------------ACGGGGCCAGGAAGTCCC--CAGAGATCATGCCTAGCTCCGTCTTCCAGGTCCTGAAACTTTATCTAAGGACCTCAGCAGGCACTTGGTAGCATAAAGAGA--GGGTGGTGGGGCATGGGGCCCTCCTGGCTGAGACTGCCTTTCGGAGAAGGGGTCTGCCCCTG---ATGG--AGCATTTCTCAGATCTGGACCCTGACAGATGGGCCACCAGGGGACCCCGGAAGACTGAACTCCTGTCTCCCACTacacacacagg-tacacacacacacgcatgagcacacat---------------------------acacacTGACATTCTCCTCACCCTGAGTAACACAGGATCTGTGAACACCAATTCTAGTCATTTCAgtgtgtgtacagctgtgtgag------------------------------tgtgtgtacagctgtgtgtgtgtacacctgtgcctgtg----tgggtgtgcacctgtatgtgcctgtgtgggtgtgccttttagggtgtgtacacctgtgtgggtgtgCATCTGGAATGGTGTGTGAACGCACAT-------GTGGTCTTAGGTACACATATG--CATGTGTGTGCACACAT s mm5.chr11 46225424 623 - 121648857 ACAGGATGCTGTAGATGTCT-CTGTGCCTCAGTTTCCCTCATCCTGGCATGTGCAGCAATCACTACGCTTACCCCCCATGGACTCTAGGGCAGAC----------------TGTGTGTGCTCACT---CCATGCCTGAGGTTGCATTTC----------------------------------------------------------------------------------------AGCT----------CGGCCCCTCCAGCCTTCTGCAGCTCTGCGGAG-TTCA---GAGTCCACTGATAGGACTGGG---TGGAAAT-GTG------CAGGCCAGCT-GAAGAGTTGC--TGGATCCCATTTCTGAGAGT----------------------------GTAGAACCAGCCAGTCCT----GAGATCATGCCAAACTCTG-CTTCCA------------------------------AAGCACCTG--AGCAGAA---------------------------------GCTGGGA---CCTT--------GAGGCCCAGCCCCACAGATGGAAGGCACCCTTCATGTAAAGACTCTATCAGA-GCTCCACCAGAGGACCCC--ATCACCTACTTACCACCCACCATCTCAGACATACATTATCCATACATATGCCTAAGCATATGC---------------------------AAGCACACACA------------CAAAGAACAAAGAAGCTCTCAATACCAACTCT-------------------CACTAGTTTGAGTGTTTATAGAATAATGTGTGTATAGCTGAGTTCATGT--------------------CTGTGCCTATG----TGG--------------------------------------------GCACATTTGTGTGGATGTGCATCTATATGGCTATATGTACCTATAT------------------TACATATGTGCCCATGTGTGTTTACACA- s rn3.chr10 47560100 686 - 110733352 ACAGAATGCCATAGATGACT-CTGTGCCTCAGTTTCCCCCACCCTGGCACGTGTAATAGTCATTAAGCT--CACCCCGTGGAGTCTAGGGCAGAC----------------TGTGTAGGCTCACT---CCATGCCTGAGGTTGCATTTT----------------------------------------------------------------------------------------AGCT----------GGGTCCCTCCAGCCTTCTACAGCTCAGTGGAG-ATCA---GAGTCCACTGATAGGAACCATCTTTGGGA---GGAAACATGTAGGCCAGCC-AAAGAGATGC--TGAATCCCATTTCTGAGAGT----------------------------ATAGAACCAGCCAGTCCCTCCCGATATCATGGCAAGCTCTG-TTTCCA------------------------------AAGCACATG--AGCAGAAGAAGCCTGGACGATGAAGTCAGGCCCACAGATGGAAGGCA---CCCTTC-----------------------ATGGAGAGACTCAATCAGA-----------------GCTCCACCAGGGGACCCC--ATCACCTACTTAACACCAGC--TCAAACATACATG-TACCCATACATATGCCGAAGCATGCATTTGTGGTATATGCACATATGTGCAAACACACACACACACACACACCACTCTGCAGAACAAAGAACCTCTCAACACCAACTCT-------------------GACTAGT-TGAGTGTTTATAGACTAATGTATATAGAGCTGAGTGCATGC--------------------CTGTGCCTGTG----TGG--------------------------------------------GCACACGTGTGTGGATGCACATCTATATGGCTATATGCACCTATATTACATATGTGTTCAAGTGTGTTTACATG--CATTTACATGCAGACCC s canFam1.chr9 38036760 775 + 53642819 gtaagatcctgctaaagacctgcatgcctcagtttccc---atctataatg-gcagcagtgaccacgca--cacctcatgggcctatgataaggCCACATATCTGGCACACAGCGCCTGCTCACT---CGATGTTTACTGGTGCTCTTTCTTTTTTGTTTTTAAACCATTTTAttttttttaattttatttacttattagagagagagagcatgagcagagggaggagcacagagagaggTGCTTTTCAATGAGCTCCCACAGTTCCTTGAAGGTCTGTGTATGTTCAAAAGAGTCCAGGGACAGGAATGATCATTGGGGACAGGAAGCATCCAGGCCAGGGAGCAGAGACACGGTGGATTGGACTCCTGGCAGTGCAAGGTGGGGCTGGCCCTGTGGCTCCAGCAGCTCCAGGAAGTCTC--CAGAGACCATGCCCGGCTCCG-----------CTGAAACTTTAACAAAGGTCCTCAGCAGGCATGGG---GCAGAAGAGGG---------------------------GGCTGTGG-----GTACAGAGGCGGGG-------------CTGA--------------------------------------------AACCCC----------------CTCTCCTACCATGcacacacg-cacacacacacacacatgcacacacac---gcaTGCATGCATGTAT--------GCACTCTGACAGTCTCTT--CCCTCAGCACCAGAGGATCTCTGAACACTGACTCTGGTCAGCTGAGTGTGTGTACA-----------------------------------CTGTGCACACGT--------------GGCCATGTGTGCACGTGAGCATGAATGTGCATTTGTAT------------------------GGGTATGTGCAGATGTGTGCACAAGCA--------------TGTAAGCACAT-------GCGGTCACATGTCCAAGTGTG--GGTGTGCATGCACAGAT a score=0.0 s hg17.chr17_random 155548 74 + 2618010 GTGTACAGCCTACACACACAGAACTGTGCACACACTCAACTGACTAGAGTTGGTGTTCAGAGATCCTGTGTTGC a score=1041.0 s hg17.chr17_random 155548 20 + 2618010 GTGTACAGCCTACACACACA s panTro1.chr19 82361091 20 - 82489036 GTGTACAGCCTACACACACA s mm5.chr11 46226047 12 - 121648857 --------CATTCACATGCA s rn3.chr10 47560786 20 - 110733352 CCGACATGCCTCTTCCCATC a score=1309.0 s hg17.chr17_random 155568 6 + 2618010 GAACTG s panTro1.chr19 82361111 6 - 82489036 GAACTG s mm5.chr11 46226059 6 - 121648857 GACCTG a score=4575.0 s hg17.chr17_random 155574 48 + 2618010 TGCACACACTCAACTGACTAGAGTTGGTGTTCAGAGATCCTGTGTTGC s panTro1.chr19 82361117 48 - 82489036 TGCACACACTCAACTGACTAGAGTTGGTGTTCAGAGATCCTGTGTTGC a score=12316.0 s hg17.chr17_random 155622 66 + 2618010 ACATGTATATATGTAAGTATCTGTGGATATAGGC-TGAGCATAAAAGAATTTAAAAGTTTGTTCTGG s panTro1.chr19 82361165 66 - 82489036 ACATGTATATATGTAAGTATCTGTGGATATAGGC-TGAGCATAAAAGAATTTAAAAGTTTGTTCTgg s canFam1.chr9 38037535 64 + 53642819 ACAGGTATATATGT--GTTTTTGTGG-TATATGCATGAGCACAAAAGAATTTAAAAGTTAGTTCTTt a score=26456.0 s hg17.chr17_random 155688 308 + 2618010 TCNANNGGCANCNNGNgtgtctcatgcctgtaatcccagctctttgggaggctgggatggtggatcacttcaggtcaggagtttgagaccagcctggccaacatggagaaaccctatctctgctaaaaatacaattagctgggtgtggtggcaggtgcctgtagtcccagctacttgggaggctgagggaggagaatcacttgaatccaggaggcagaggttgcggtgagccaagatctcaccactgcactccagcatggtgacagagccagactccatttcaaaaaaaaaataaaaataaaaGCTTT s panTro1.chr19 82361231 301 - 82489036 tc---aggcat----ggtgtctcatgcctgtaatcccagctctttgggaggctgggatggtggatcacttcaggtcaggagtttgagaccagcctggccaacatggagaaaccctgtctctgctaaaaatacaattagctgggtgtggtggcaggtgcctgtagtcccagctacttgggaggctgagggaggagagtcgcttgaatccaggaggcagaggttgcggtgagccaagatctcaccactgcactccagcctggtgacagagccagactccgtttcaaaaaaaaaataaaaataaaaGCTTT a score=10723.0 s hg17.chr17_random 155996 64 + 2618010 TTCTGGCATCT------CTCTCTCCCCCTTTCCACCCATCCTCC----TCTTTTCTCTCTTTTATTCCTTTACT- s panTro1.chr19 82361532 64 - 82489036 TTCTGGCATCT------CTCTCTCCCCGTTTCCACCCATCCTCC----TCTTTTCTCTCTTTTATTCCTTTACT- s canFam1.chr9 38037771 75 + 53642819 TTCTGACctctctctccctctctctctctttcCATCCGTCCTCCCCTTCCTTTTTTCTCCTTTTCTCCCTTCCCT a score=2402.0 s hg17.chr17_random 156060 8 + 2618010 GTAATGAA s panTro1.chr19 82361596 8 - 82489036 GTAATGAA s mm5.chr11 46226441 8 - 121648857 AAAACAAA s canFam1.chr9 38037846 8 + 53642819 ATAATAAA a score=100431.0 s hg17.chr17_random 156068 487 + 2618010 AAAAAGGA---------------AAGGCAGCCAAGGAGACCAGAGACCAGCaaagggccagcga-gcttg-aagtcacgtagacgtagattcaaaccccagctctgttattctctgt-ccagtgatactgagcaagtcacttaacccctccaagcctcggtttctcattca-------taccgtaggataaaaacatttgcctgacaTAG--CACGCGACAGTAAGAGTGCATGAATTCANCAGTNGGgtggctaagtggctgactctggggtc---agactgggtttgcagccacctgttctgtgagtttctaatagggtgaccgtggacag---tttgttaccccctctgc-ctccgtgtcatcgtccctaagactgtcaccttgt-ggagttgctatgaggagtgaatgtggtggcatatttaataccttgcagcagtgcttggcacatg-caggagctttataaggggcagttattaAAATGTGT-ATCAAAGGCACTTAGGAAAAAAAAAGAGAGAAAG s panTro1.chr19 82361604 478 - 82489036 AAAAAGGA---------------AAGGCAGCCAAG-------GAGACCAGCaaagggccagcga-gcttg-aagtcacatagacctagattcaaaccccagctctgttattctctgt-ccagtgatactgagcaagtcacttaacccctccaagcctcggtttctcattca-------taccgtcggataaaaacatttgcctgacaTAG--CACACAACAGTAAGAGTGCATGAATTCA-CAGT-GGgtggctaagtggctgactctggggtc---agactgggtttgcagccacctgttctgtgagtttctaatagggtgaccgtggacag---tttgttaccccctctgc-ctccgtgtcatcgtccctaagactctcaccttgt-ggagttgctatgaggagtgaacgtggtggcatatttaacaccttgcagcagtgcttggcacatg-caggagctttataaggggcagttattaAAATGTGT-ATCAAAGGCACTTAGGAAAAAAAAAGAGAGAAAG s mm5.chr11 46226449 461 - 121648857 ACAAAACAAAACCAGAAAGTAAGAAGGAAGCAAAG-------GAGACCAGCCAGGGGTTAGCCATGCTTGTGAGTCACACAGGTTT-GGTCCAAGTCCCAGCTCTGCCACTGTC----CCTGGGGTCTCCAGC-AGCCACACAACTATTTAAATCC---ATTTATCATTTG----------AGTGGGATCACAGCATTTGCAGGGCCCCC--ACTCCAGCAGTGACAATCTATGGTCCCGGGTCT-GAGTTGCCGATGGGCTGGCCTAGGGCTC---AGCCTGTGTGTGGTGGTATCT-------------------GGGTGACCTTCGGCAGCTTCTTGTCCTCCTCTATGC-CTCC--GTCATTGTCTCCAAAATTCGCTATTTCT--GAGCTGTCCTGAGGACTAACTGAAGTAACATAAT--GTTCCTAG-AGCATGGGGTGGCACCCACCAGGGGCTTCCTGAGGGACAGGAATCAAAATCTGT-CCAAAAAGCACTT---GAAGCCCAAGGGAGAAAA s rn3.chr10 47561166 442 - 110733352 AAAAAGGA---------------AA---AGCAAAG-------GACACCAGCCAGGGGTTAGCCAAGCTTGTGAGTCACACAGGTTT-GGTCCAAGTCCCAGCTCTGCCACTGTCTGTCCCTGGGGTCTTGAGC-AGCCACACAACTATTTAAGCCC---ATTTATCGTCTG-----------AGGGGATCACTGCATTTTCAGGCCCCCGACCCTCCAGCAGTGAAAATCTGTGGTTCCAGG----ACGTTGCCGATGGGCTGGGCTAGGGTTC---AGCCTGTGTG----------------GTGGTCTCC-----GGGTGACCTTCAGCAGCTTCCTGACCTCCTCTGTGC-CTCC--GTCATTGTCTCCAAAATGCACTGTTTCC--AAGTTGTCATGAGGATTAACTGAAGTAACATAAT--GTCCCCAG-AGCATGGGTTGGCACCCACCAGGGGCTTCCTGAGGGACAGGAATCAAGATCTGT-CCAAAAAGCACTC---AAAGTACAAG-GAGAAAA s canFam1.chr9 38037854 443 + 53642819 --AAAAGA---------------CAAGCTgcagag-------gagactagaagagggccagggg-acctggaagtcacagggccatgggtctgaatgccagctcggccagttCCCAT-CCAA------------AGCCTCAGAGTCCCTTCTGGGG---GTGTTTGCTTGACAGACTGCACCACAGGCCAAC-------GCGGGCTCTCG--GACGCCGGAGCAGGCACACATG------------GGACTGTTGCATTGcaggctctgggctcaggaggccgcattcacag---cctgtcctgcaggtttcttgcagtgtgagctcgggtgg---tttctcgccctctctgtgccccgtgtcccggtctctaagagaccctccctgacacaggggctgtcagggctcagtg-agtgatatact--gtg---tg-aacagtgcttggcacacagtgggagctttataacgg-cagcCAGTAAAATGTGTGTTGAGAAGCATTT---AGAGAAAAAGAGAAAA-- a score=1218.0 s hg17.chr17_random 156555 7 + 2618010 CAAAAAA s panTro1.chr19 82362082 7 - 82489036 CAAAAAA s mm5.chr11 46226910 7 - 121648857 ATGGAAT s canFam1.chr9 38038297 7 + 53642819 CAAAAAA a score=1678.0 s hg17.chr17_random 156562 10 + 2618010 GCATTTAGAt s panTro1.chr19 82362089 10 - 82489036 GCATTTAGAC s mm5.chr11 46226917 10 - 121648857 GCATCTGGCC a score=25738.0 s hg17.chr17_random 156572 313 + 2618010 tgttttctcttcagagacanannnntncntntgctctgtcgcccaaagctggagttcagcggcgagatcctagctcactacatcctngngnaactcctgggctcaagcaatcctcccacctcagcctcccaagtagctgggactacaggtgcagccactgtgtccaggtaatttttgaaaaaaaattttttgtgtagagacaggatctcactatgttgcccgggctggtctgcaactcctggcctcttaaaatcctttcaccctgccttcccaaagtgctggngattacaggcacgagccaccatgcccagcc s panTro1.chr19 82362099 303 - 82489036 TGttttctcttcagagaca-agatct-----tgctccgtcgcccaaagctggagttcagcggcgagatcctggctcactacatcctag---aactcctgggctcaagcaatcctcccgcctcagcctcccaagtagctgggactacaggtgcagccactgtgtccaggtaatttttgaaaaaaaattttttgtgtagagacaggatctcactatgttgcccgggctggtctgcaactcctggcctcttaaaatcctttcaccctgccttcccaaagtgctgg-gattacaggcacgagccaccatgcccagcc a score=2334.0 s hg17.chr17_random 156885 10 + 2618010 TATTTAGAGT s panTro1.chr19 82362402 10 - 82489036 TATTTAGAGT s canFam1.chr9 38038305 10 + 53642819 TATTTAGACT a score=1866.0 s hg17.chr17_random 156895 6 + 2618010 ttttag s panTro1.chr19 82362412 6 - 82489036 ttttag s mm5.chr11 46226928 6 - 121648857 CCTTGG s canFam1.chr9 38038315 6 + 53642819 tttcag a score=123213.0 s hg17.chr17_random 156901 403 + 2618010 gagggatggaaatgatctaaacttggattgtgctggtggttgcacaagtctttaaatTtgctggtggttgcacaagtctttaaatttactaaaaatcattaaattgtgcacttaaaatggttgaattttatggtgtataaattatgtctcaa-tacagctg--ttttttaaaaaGCATTTANAG-TTAGTGAAAAAGCAACT-TGCAGAATAATATACACAGTATTGTTGTCATTTGTGAAACGTTTTAAACTATGTAAAACAATACTTCT------CTAATATTTGTCGTAAAAATATCAAATGCAG-CCTGGAATGACATATGTAAATC---TCATCATTATGCTTGCCCNNGNNGGGNNNGNN-------NNGAGACACAAGAAGGG-AATTTTTATCTGTAATGTTTTATTGTATTTATACT s panTro1.chr19 82362418 372 - 82489036 gagggatggaaatgatctaaaattggattgtgctggtg----------------------------gttgcacaagtctttaaatttactaaaaatcattaaattgtgcacttaaaatggttgaattttatggtgtataaattatgtctcaa-tacagctg--tttttaaaaaAGCATTTAGAG-TTAGTGAAAAAGCAACT-TGCAGAATAATATACACAGTATTGTTGTCATTTGTGAAACGTTTTAAACTATGTAAAACAATACTTCT------CTAATATTTGTCGTAAAAATATCAAATGCAG-GCTGGAATGATATATGTAAATC---TCATAATTATGCTTGCCC---CTGGGGTGGGG-------TTGAGACACAAGAAGGG-AATTTTTATCTGTAATGTTTTATTGTATTTATACT s mm5.chr11 46226934 358 - 121648857 GAGGGATGGGGTTGTTCTAAAACCGGATTCTGCTGATGGATGCTCAGCTCTGAACG----------CTTACCCAA---------------AGTAAGCGCTTGGTTGTATACTTGG-----------CTTATGGTGCATAAATTACACCTCAG-TAGGGCAG--CTTTTAAAAGACCATCTAGAGATGGGTAAAAAACTCACTGTGCAGAGTAATAGGTCCAGGAGTCCTGTCGTTTATGCAAAGTTTTAAACTATGAAAAATA----------------AATTTACATGTTAAAAATACACAGCTTGG-CCTGGCATGGTCTATGTGAGTT---CAATTAATGGGCCTGCCTC--TTGGAGTGGGG-------CTGGAACACAAGAAGGGAAATTTTTATCTGTAGTACTTTAGTGTATTTATATT s rn3.chr10 47561633 355 - 110733352 GAGAGGTGGGGATGTTCTAAAACCGGATTCTGCTGATGGATGCGCAGCTCAGAATG----------TTTACCCAA------------------AGTCGCTCAGTTGTATACTTGG-----------CTTATGGTGCATAAATTATACCTCAG-TAGGGCAG--CTTTTAAAAGACCATCTAGAGATAAGGAGAAAGCACAATGTGCAGAGTAATAGTTCCAGGAGTCCTGTCGCTTATGCAAAGTTTCAAACTATGAAAAATA----------------GATTTACATGTTAAAAATACACAAGTTAG-CCTGACATGGTCTATGTGAGTT---CAGTTAATGGGGCTGCCCC--CTGGAGTGGAG-------CTCGAGCACCAGAAGGGAAATTTCTGTCGGTGATATTTTATTGTATTTATATT s canFam1.chr9 38038321 380 + 53642819 gagggatgaaacagttctaaaattggattgtgcggatagttacacaaccatgtaaa----------tttactaaa------------------aatcattatctcgtacac--aaaacggttgagttttatagcatataaattatgcctcaattaaagctgtttttttaataaGGCATTCAGAGCTGAGT-------------TGCAGAATAATGCATGCAGTATTG-TGCCATTTATGGACAGTTCTAAACTGGATAAAACAATACTGCTGCTATACAAATACCCATAGTAAAAATCTTGAAGTCTGCCCCGAGGGGACCCACATCAGCTGCATCATTATTATGTTCACTCG--CGGGAGAGGGGGTTGGCCATGAGACCCAGGAAGGGAAAGTTTTATCTGTGGTATTTCACAATATGGACATT a score=91.0 s hg17.chr17_random 157304 1 + 2618010 T s canFam1.chr9 38038701 1 + 53642819 T a score=273.0 s hg17.chr17_random 157304 1 + 2618010 T s panTro1.chr19 82362790 1 - 82489036 T s mm5.chr11 46227292 1 - 121648857 T a score=7817.0 s hg17.chr17_random 157305 51 + 2618010 TTTAAAGGCCAGGAAAGCTGGGCAACGATGTCACATAAAGTCATAACATAA s panTro1.chr19 82362791 51 - 82489036 TTTAAAGGCCAGGAAAGCTGGGCAACGATGTCACATAAAGTCATAACATAA s canFam1.chr9 38038702 47 + 53642819 --TTAAAACTGGGAAATCCAGGCCATGGTGTCACAGAA--CCAGAGCACAA a score=13276.0 s hg17.chr17_random 157356 144 + 2618010 AAACGGCAAAgccaggcacaatggcgtgggcctgtggtcttagctactcgggaggctaaggcaggaggatcgtttgcatccaggagttcaagtccagcctgggcaatatagcaagtcgccatctctaaaaaaataaataaTCAT s panTro1.chr19 82362842 144 - 82489036 AAATGGCAAAgccaggcacaatggcgtgggcctgcggtcttagctactcgggaggctaaggcaggaggatcgtttgcatccaggagttcaagtccagcctgggcaatatagcaagtctccatctctaaaaaaataaaTAATCAT a score=19092.0 s hg17.chr17_random 157500 182 + 2618010 GGGGGCagggagaggtgcctaatg----agagaaacacatgctgggggtggggaa---ggctggcaacttcctgtttcatgacttgggtg-gtgattatgctgatgtctgctttataactaatcattttaggcaactgtgttttatgcagttttatatgctatcgttcacaatCTTATGAGTTCAAAAAT s panTro1.chr19 82362986 182 - 82489036 GGGGGCagggagaggtgcctaatg----agagaaacacacgctgggggtggggaa---ggctggcaacttcctgtttcatgacttgggtg-gtaattatgctgatgtctgctttataactaatcattttaggcaactgtgttttatgcagttttatatgctatcgttcacaatCTTATGAGTTCAAAAAT s canFam1.chr9 38038749 179 + 53642819 GGGGGCAGGAGAAGCTGAGAAGCGTGACTGAAGGACCCTTGCTGGAGGCTTGGCGTCCAGAAGTCACTTCCTTATTTCACGACTTGGAAATGTGATTATGC----ATCCGTGCTCCAGGCAAT--TTTCAAGCAC-----TTTTTTTCTTTTTAAGTTGAAACCCTCaacaaacaaacaaacaaacaaac a score=28746.0 s hg17.chr17_random 157682 314 + 2618010 CTCGggctgggagcggtggctcgcacctgtaatcccagcaatttcagaggctaacgggggagcatcactctagcccagtagtttgagatcagcctgggcaacatggcgaaaacccgtctctgcaaaaaaatacaaaaaaattagccggttgtagtgggatgtgcctgtagtcccagctactgagggggctgaggtgggagaatcacttgagcccaggaggtggaggctgcagtgaaccgtgattgtgccacggcactccagcctgggcgacagagcaagaccccgactcttaaagaaaagcaaactaaacaaaa s panTro1.chr19 82363168 308 - 82489036 CTCGggctgggagcggtggctcgcacctgtaatcccagcaatttcagaggctaacgggggagcatcactctagcccagtagtttgagatcagcctgggcaacatggcgaaaacccgtctctgcaaaaaaatacaaaaaaattagccggttgtagtgggatgtgcctgtagtcccagctactgagggggctgaggtgggagaatcacttgagcccaggaggtggaggctgcagtgaaccgtgattgtgccactgcactccagcctgggcgacagagcaagaccccgactcTT------AAGCAAACTAAACAAAA a score=1624.0 s hg17.chr17_random 157996 9 + 2618010 CCCTCCATA s panTro1.chr19 82363476 9 - 82489036 CCCTCCATA s mm5.chr11 46228092 9 - 121648857 AACTCTAAA s rn3.chr10 47563495 9 - 110733352 ATCTTTAAA a score=119137.0 s hg17.chr17_random 158005 365 + 2618010 AAAAATGAAAA----AGTTAGGGTGGATATGTTTTGGGATTTGTTATGTTATTTTCTACAGTCTTGTGTATTAAAATTCAAAATAATTAAAACAAAATTATGGCCTGC-----------------------------CTTGCAGGTTGGGGTGGGG-------GCTGTTAGGTATT------------TGGG------------------------ATAACACACTGAAGTG-CCTGGNGNGANACNGNGNAGGGAGGCTTGCCCG-------------CCCTCCTCAACTAGGGGAGCCCCGAGGCG----TGGCTGTCTCCTTTCCCCGGAGGAGCAGC--------------------------CTGCCCTCCC---AGGCTCCCAGACG-----------CCAGCAGATGCTTGGCACAGGGGCCTCAGACAGCCTCCCTGATTTACGAGGCTCTACACGTTC-CCCGCTGATGGATGGCCCTCTGCTCGCCCTCC s panTro1.chr19 82363485 359 - 82489036 AAAAATGAAAA----AGTTAGGGTGGATATGTTTTGGGATTTGTTATGTTATTTTCTACAGTCTTGTGTATTAAAATTCAAAATAATTGAAACAAAATTATGGCCTGC-----------------------------CTTGCAGGTTGGGGTGGGG-------GCTGTTAGGTATT------------TGGG------------------------ATAACACACTGAAGTG-CCTGGGGAGA-----CGGAGGGAGGCTTGCCCG-------------CCCTCCTCAACCAGGGGAGCCCCGAGGCG----TGGCTGTCTCCATTCCCCGGA-GAGCAGC--------------------------CTGCCCTCCC---AGGCTCCCAGACG-----------CCAGCAGATGCTTGGCACAGGGGCCTCAGACAGCCTCCCTGATTTACGAGGCTCTACACGTTC-CCCACTGATGGATGGCCCCTCGCTCGCCCTCC s mm5.chr11 46228101 409 - 121648857 AAAGATGAAAATACTGATTTTGGTGGCTAGGTTTTTGAGTTTACTATGTCAGTGT----AATCCTGCGTATCAAAATTCAAAATAACTCAAACAAAATAATTGCCTTCTGAGAGAGGATGAAGGCTCCAGATGGAATCTGCCAGCTTTGGGAGATGTATAT--GTTCTTAAATGTT------TTATTATGAA------------------------GTAAATATCTGGGTTG-AAAAGGAAGGTAATGAGCGAGAAGCCCTGACTA--------------GCTCCCCCACCACCATGATCCTGGGGCTACCCTGGCTCTCTCCAGTGCCCAG--GGACAGC--------------------------CCGCCCGCCCCTTAGGCTCTCAAATGATGGTGAGTGCCAGGCAGATGCT--GCTAAGGGGCCTCAGACAGCCTCTCTGACTTCCCAGGCTCT----------CGCCTGACGGATGACCCTCCACTCTGCCTCC s rn3.chr10 47563504 420 - 110733352 AAAGATGAAAATTCTGATTTTGGTGGTTAGGTTTTTGAGTTTATTATGTCAGTGT----ACTTCTGTGTATCAAAATTCAAAATAATTCAAACAAAATAATTGCCTTCTGAGAGGGG--------------------ATGAAGGTTCCAGATGGAATCTGCCAGCTTTGGGAGATT------------TATATGTTCTTAAAGGTTTTATTGTGAAGTAAATGTCTGGGTTGAAAAAGGAAGGTAATGAGCGAGAAGCCCTGGCTA-------GGCCCTCCCTCCTCTCCCACCGCAGTCCTGGGACTGCCCTGGCTCTCTCCAGTGCCCAG--GGACAGC--------------------------CTGCCTGTCT----GGCTCTCAGATGATGGGGAGTGCCAGGCAGATGCT--GCTAAGGGGCCTCAGACAGCCTCCCTGATTTCCCAGGCTCTCCACGTCT--CGCCTGATGGATGACCCTCCACTCTGCCTC- s canFam1.chr9 38038928 426 + 53642819 aaacaTGAAAGGGTTCATTTTGTTGAGAATGTTTTGGGGTTTGTTATGTTAATCTCTATACTCTTATTTGTTGAAATTCAAAATAGTTAAAACAAGATAATGGCTTGC-----------------------------CT-GCGGGCTGGGGTGAGG-------GTTGTAGAGGGTAATGAGACTCTTCTGGG------------------------ACCACAGACTGAAGCG-CACAGGAGGG------GGGCAGAGCCCTGAGCATCACCTCGGTCCTCCCTCCTCAACCAGGGTGGCCCTGGGGTTACCTTGGCTGCTCTCAGTCCCCATGGGAGCAGCTGCACTGCAGCGGCCCCTCAGCCTCACCCCCTCCCC---GGGCTCCCAGACG-CACTGAGCG-CTGGCAGACAGTTGCCAAAGGGGCCTCAGACAGCCTCCCTGATTTACCAGGCTCTCCACGTCTCCCTGCTGATGGATGA-CCTGTGCTTTCCCTCT a score=65686.0 s hg17.chr17_random 158370 352 + 2618010 CTCCTCCCTCTAAACGCTGCTGTCTCCAAGGCCACTGGCCCAGAGTGGGAG-----CCGCACAGGCAGGGAGGAGCCGGGCTGGC------------------------CTCC-----CTCCTCCTCCCA----CCCAGCTGC---CCT----GTCACCCGGTGGTCTCCCCCA---------------------------------CGGCTGCCTC-CCTTCCACCTCCGTGAATTGAGTGCTTGCCCTGCATGAGCCAGGCACCAG-------GCTAGGCCTCTGCCTCCAAGGAGGCTTGCAGAC---CAGAAATGAGCAGGGCCTGAACACAGCTGCTTTCCACGGTTC-CCCaggcctccctaggagttggcctcgag-tgagaccttcagtgaggatgagccccc-ccatgggatggtttggtggcagaatattccag s mm5.chr11 46228510 367 - 121648857 -TCCTCCCTCTAAATGCTGCTGTCTCCAAGGCCACCTG-CTGGAGTGGGAGAGAGCTGGTGCGGGCAGGGAGGAGCAGGGCTGGT--------CCAGGGCTGGGGG---CTCTGCAGGCTTCTCCTCCCAGATGCCCATCTGTAAACCT----GTGACCAGGAG-------------------------------------------CAGCTGCCTC-----CTATCACTGTGAGTCGAGTGCC-------CATCAGCTGGGAGACAG--TCAGTGCTAAGTTCCTGTCTCCAA-GAAGCTTGCAGACATTAAGCAATAAACAGGA-GGGAACACAGCTGCTTTCTACGGCCCTCTCTGGCATCTCTAGGAGCTGGCCTTGAGCTAAGACCCACAAAATGAAAAAGGGACA-TCTTGAGGTGACTTGACGGGAGGATGTCCCAG s rn3.chr10 47563924 370 - 110733352 CTCCTCCCTCTAAATGCTGCTGTCTCCAAGGCCACCCG-CTGGAGTGGGAGAGAGCTGGTGTGGACAGAGAGGAGCAGGGCTGGT--------CCAGGGCTGGGGGCGCCTCTGTAGGCTTCTCCTCCCAGATGCCCATCTGTAACCCT----GTGGTCAGGAT-------------------------------------------CAGCTGCCTC-----CTATCACTGTGAGATGAGTGCC-------CATCAGCTGGGAGACAG--CCAGCGCTAAGTTCCTGTCTCCAA-GAAGCTTGCAGACATCAAGCAATAAACAGGA-GGGAACACAGCTGCTTTCAACCACTGTCTCTGGCATCTCTA-GAGCTGGCCTTGAACTGAGACCTACAAAATGAAAAGGGGCCA-TCTCAAGGTGACTTGGTGAGAGGATGTCCCAG s canFam1.chr9 38039354 405 + 53642819 CTCCTCCCTCTAAATGCTTCTGTCTCCAAGGCCACCCGCCCAGAGTGGGAGCACGTT--CACAGGC-GGGAGGAGCTGGGCGGGCTGGCAGGGCCTGGGCTGG------CCTTCCGGCCTCCTTCCAC------CCAAGCTGC---CCTGCCAGTAACCCCGGGGTCTCACCCACAGCCAGAGCTAGGCCTGGGGTGCTGTTTTGCTCAGATCCCTCCCCTTCAACTCCTGTGAACGGAGCTC--------CACCAGC-AGGGGCCAGGCCCTGAGCTAGATCCCTGCCCCAAG-GGAGCCCCTGGAC-------AGTAAACA----ATGAGCACCCTTGGCTTCGGTGGGGTTGTCAGGCCTCTCTAGAAGAGGGTCTGGAACAGAGATCTAAAAGGTGAGAATGAGGCACCCATCAAGTGATTTGGTGTAAGAATATTTTAG a score=100.0 s hg17.chr17_random 158370 1 + 2618010 C s panTro1.chr19 82363844 1 - 82489036 C a score=4705.0 s hg17.chr17_random 158722 38 + 2618010 gag-gaggccctggacagtggaaaggccccgaggtaggT s mm5.chr11 46228877 39 - 121648857 GAGTGGGGAATTCGATGGTACGAAGGCCCTGAGACATGT s rn3.chr10 47564294 34 - 110733352 GGGTGGGGAATTTGATGGTACAAAGGCCCTGCCT----- s canFam1.chr9 38040000 38 + 53642819 gaa-aaggagcaggctagtacaaatgccctgaggcaagc a score=0.0 s hg17.chr17_random 158760 4 + 2618010 GGGG a score=-125.0 s hg17.chr17_random 158760 1 + 2618010 G s mm5.chr11 46228916 1 - 121648857 C a score=1800.0 s hg17.chr17_random 158761 3 + 2618010 GGG s panTro1.chr19 82364235 3 - 82489036 GGG s mm5.chr11 46228918 3 - 121648857 GGG s rn3.chr10 47564328 3 - 110733352 GGG a score=34571.0 s hg17.chr17_random 158764 200 + 2618010 CTGTGAGCCTGCACAGGTGTGA-----AAGTGGGGAGGGTAGGACAA-----AAGCA-TGAAATGGGCTCTTCCTGAGTACTAAGACCTTTCTACCAAGGCCCTGTGGGAA-------GGCGT-GAGCCACAGTCACCACCGGGGCTGCTGGAAGCCAG---GTGCGGTAGGAAC----------AGTCTCCCCGCTGGCCACACAGGGGTGGACTTTgagccctgagctag--------------- s panTro1.chr19 82364238 198 - 82489036 CTGTGAGCCTGCACAGGTGTGA-----AAGTGGG-AGGGTAGGACAA-----AGGCA-TGAAATGGGCTCTTC-TGAGTACTAAGACCTTTCTACCAAGGCCCTGTGGGAA-------GGCGT-GAGCCACAGTCACCACCGGGACTGCTGGAAGCCAG---GTGAGGTAGGAAC----------AGTCTCCCCGCTGGCCACACAGGGGTGGACTTTGAGCCCTGAGCTAG--------------- s mm5.chr11 46228921 191 - 121648857 TTTCAGTAGTGTACAGGCTTAAGGCACGAGATGG-AGGTTAGGACAAAAAATAAACA--GAGTTAGATTCTTTCTAAGGACTACGCATTCTCT-----GGTTCTGTCAGAG------------------------------GTGGCTACAAGAACCAAG---GGGCCAAGGGAACAACCCCTGAAAGACCCCTCTGTGGCCTGGATGGGGTGGACTTCAAGCCCTGAGCCAG--------------- s rn3.chr10 47564331 173 - 110733352 CTTAGAG---GCAC-------------AAGATAG-GGTTTAGGAAAA--AATAAACA--GAATTAGATTCTTTCTAAGGACTAAGTGTTCTCT-----GCTTCTGTCAGAG------------------------------GTGGCTACTAGAGTCAAG---GAGCCAAGGAAACAACCCCCAAAAGAGCCCTCTGTGGCCTAGATGGGGTGAACTTCAAGCCCTGAGCCAG--------------- s canFam1.chr9 38040038 222 + 53642819 ccatgcttctgttcagg---------------gg-aGGATTGGATGA-----AGGAAATGAAATGGATTCCTCCTCAAGACTGAATACCCTCTGCCATGGCCCTGGGGGGCAAGGGGAGGTGTCAAGGTAGAGTCACCACCAGGGCCACCAGAACCCAGGCAGGGCCAAGGGAGGAGCCCCAGGAAA--CCCCCACTGGCTT--ACTGAGTGGGCTTTAAGCCTTGAACCTAAGGTTGCTTCTAGAG a score=-31.0 s hg17.chr17_random 158964 1 + 2618010 a s canFam1.chr9 38040260 1 + 53642819 G a score=273.0 s hg17.chr17_random 158964 1 + 2618010 a s panTro1.chr19 82364436 1 - 82489036 A s mm5.chr11 46229112 1 - 121648857 A a score=166023.0 s hg17.chr17_random 158965 1267 + 2618010 accccag----------------------------------------------------agggagccgggagccctggccctgcctcccagttgctgtatgaccttggacagctcaggccgcctctcgg--cctccgtttccacattcgcagaGCTG--------GTGAAAGCTCTGCCGGAACTCCCG-CCTCAGAATACTGGG-------------CCCCACCCTGGGCCTGGAGCCTGGGCTCCCTGGGAATGGGTCCTGCGAATCTCCCAGGGGGTCCCAAGGCAATCG-AGTTGGACCCCACAGCTCAAGGGCCACAAAGATGGTGATGCCCCATTCAGgtcctcaagcaattcaaccccgttggggagac--acacttggacaataatcac--gaagcgtggtgaggcc----------cacaagggtggccatgccaggggaccactgtggaaagcttgtcggaggaggcaacacctgagtggggtgttgagggcagcataggagtgtgccaggtggtcaagggtgaatgaggctgcccagcaggctgagccatccgagcaggggcgtggtggctggagctcaccagtg--tgtttgggcgctgggctgtggtgggagtgggganngnnatggggggtactgnaatgagttacanaggACCCTTCA---TCCCTGAGTCTTTGACTCGGAATGCAGACAGCA--AAGGGCTCCCCGCACTGACCCATAAGACTGGTGGAGCCCACGGCATCAGTAGCCTCCAGGGGAGTGTGATAGGAGGGT----GACCCCATGCCAAGGCCACAGGACAGATGCAATAGGAGCCACCGGGCCTCCACCCTCTGCCCCGTAGGGCCCCTTCACACCAAGAgctccagccaggctcaaccacaagcagctccccaaacaccacactcctccccatgcccggcc-tcagcacgtgctgttccccctgcctggaccccttc-ctccttcctgcagctctttgcctggctaaccttttctcagccttgaggtctcagGACTGAGGCCAACGCAGTGCCTCCTGCTCTTGCCTTAGGGCAGAAGAGGGGTCAGGGAGACAGCGGGTGGGGCTGCAGAGGTGGGGGCTGCCGTGTGGTTAA--------CCTGATGCAGACCCCCAGCCCTCTGAGGAAGGCTGGGCATGAGCCTGAAGGCCAGGCCTTGTAGAGAGTCCGGGACCCCTGGGTCATTGTCCTGTGGGTTCAAGGGAACGGAGGACTGGCCCAGCCCTGGCAGGTGCCACCGAGGATGGTAAGCAAAGCTCAGCTCAGCTC--GCCCTCCCTCCTCACCCACAAAGAACTATGCTCTGCCACCTGCAGCCTTAACATGTTGGGCAAGCAT s panTro1.chr19 82364437 1261 - 82489036 ACCCCAG----------------------------------------------------AGGGAGCCGGGagccctggccctgcctcccagttgctgtatgaccttggacagctcaggccgcctctcgg--cctccgtttccacattcgcagaGCTG--------GTGAAAGCTCTGCCGGAACTCCCG-CTTCAGAATACTGGG-------------CCCCACCCTGGGCCTGGAGCCTGGGCTCCCTGGGAATGGGTCCTGTGAATCTCCCAGGGGGTCCCAAGGCAATCG-AGTTGGACCCCACAGCTCAAGGGCCACAAAGATGGTGATGCCCCATTCAGGTCCTCAAGCAATTCAACCCCGTTGGGGAGAC--ACACTTGGACAATAATCAC--GGAGTGTGGTGAGGCC----------CACAAGGGTGGCCATGCCAGGGGACCACTGTGGAAAGCTCGTCGGAGGAGGCAACACCTGAGTGGGGTGTTGAGGGCAGCATAGGAGTGTGCCAGGTGGTCAAGGGTGAACGAGGCTGCCCAGCAGGCTGAGCCATCCGAGCAGGGGCGTGGTGGCTGGAGCTCACCGGTG--TGTTTGGGCGCTGGGCTGTGGTGGGAGTGGGGAG----ATGGGGGGTACTG-AGTGAGTTACA-AGGACGCTTCA---TCCCTGAGTCTTTGACTCGGAATGCAGACAGCA--AAGGGCTCCCCGCACTGACCCATAAGACTGGTGGAGCCCACAGCATCAGTAGCCTCCAGGGGAGTGTGATAGGAGGGT----GACCCCATGCCAAGGCCACAGGACAGGTGCGATAGGAGCCACCGGGCCTCCACCCTCTGCCCCGTAGGGCCCCTTCACACCAAGAgctccagccaggctcaaccacaagcagctccccaaacaccacactccttcccatgcccggcc-tcagcacgtgctgttccccctgcctggaccccttc-ctccttcctgcagctctttgctgggctaaccttttctcagccttgaggtctcagGACTGAGGCCAATGCAATGCCTCCTGCTCTTGCCTTAGGGCAGAAGAGGGGTCAGGGAGACAGCGGGTGGGGCTGCAGAGGTGGGGGCTGCCGTGTGGTTAA--------CCTGATGCAGACCCCCAGCCCTCTGAGGAAGGCTGGGCATGAGCCTGAAGGCCAGGCCTTGTAGAGAGTCCGGGACCCCTGGGTCATTGTCCTGTGGGTTCAAGGGAACAGAGGACTGGCCCAGCACTGGCAGGTGCCACCGAGGATGGTAAGCAAAGCTCAGCTCAGCTC--GCCCTCCCTCCTCACCCACAAAGAACTATGCTCTGCCACCTGCAGCCTTAACATGTTGGGCAAGCAT s canFam1.chr9 38040261 1171 + 53642819 ATCCCAGATGGCAGGAGAGGGGATGACCACCCTCTCTGCCCCTCagagcagagggaggtagggagcctcaagccctgtccctgcctcaaaattactggatgaccttggacaggttggggcacctctcgggacctcggtttccATGTTAGCCAAGATGTGCCATGCTTGTGGACCCTGCCTG--CCCCTGACTGCAGAACCCTGGGAACGTGGGTGATTCCCAGGCCCCACTCCAGCTCCAGGCCTCTCTGAGGGTGAGTCCCGAGGACCTCCTGGGCGGTCCAAAGTCACCTGAAGTAACACCCCACATCTCAAGGGCCACAGAGATGGAGCGGTTCCCTCCAGGTCCTCAAGAAATTTGACCCTGTTGGGGAGACAGACTCTTAAACTAAAATCACCAGATGTGTGACAAGCCCTGTAACATGTCACGGACGTGGCCA---CAAGGGGACATGGTGGGAAG---------------AACACCTGTGC-TGGCGTGGAGGGCACCGAGGG-----GCTGGCTGCTCAGGGAGGGGTGAGG-------------------------GCAGAGGC----------AGCCCCGCCAGCGGCTGTCTGGGCACCGGCCT-------GAGCAGC-------AGGAGAGGTGCCC-AAGGAGTTGGA-GGAGCCCTTCACTGTCCCTAACTCTTTGACTCTAAGTACAGATGCCACCAAGTGCTCCACACACTCACCCAGAAGGCAGG---------CAGCATGGGGG----CAAGGGGGGGGTGACAGCTGGGCCTCAGACCCC----------------------------------------CCCCCACCCCATCCCCT---GGGCCCCTGCACACCACACGCTCCAGCCA-ACTCAACCAGAAACAGTTCTGCCAGCAGC-CACACCTTCCCA--CACGGCCTTTAGTGCGGGCTGTGCCCCCTGCAAGGACCCCTTCTCGCTCTTCCACCGC-CTTCACGAGGCTAACTCGTTCTCAGCCTTGGGTT--------------------------------------------------------TCGGGGACCCAGCAAGTGGGGCAAGGGAGGC-AGGGCTGC--TGCTGCTAACCCCACTCCCCCACACCGACCCTGGGTCCTCCGAAGA--GCTGGGGGCGAGCCCTGAGGCC-TACCCTGCAG-GAGCCTGGG-CCCCAGAACGGTTGTCCCATG----CAGG----CAGGGGATTGACCTGGGATTGACCATCACCGTGGGGGACAGTAAGCAAACCCCAGCCAGGCTCCAGACCCCCTAACACACTTGCAAAGAGCTGTGCTCTGTTATCTTCAGCTTAAATATGTGTGGCAAACTT a score=33048.0 s hg17.chr17_random 160232 481 + 2618010 GCCCCTTCATGGGGGCAGGGGACAGGTAACTGTCGCGGGGGCGGGGGAACGGGTGACTGTCGCGGGGGCGGNGGGAACGGGTGACTGTCGCGGGGCGGGGGAACGGGCGACTGTCGcgggggcgggggaacgggtgactgtcgcgggggcgggggaacgggagactgtcgcgggggcgggggaacgggtgactgtcacgggg---ggggaacgggtgac-tgtcgtgggg---ggggaacgggtgactgtcgcgggggcgggggaacgggtgactgtcgcggggg--ggggaacgggtgac-tgtcgcgggggcgggggAACGGGTGACTGTCGCGGGGGCGGGGGAACGGGTGACTNNCNCGGGGG----GGAACGGGTGACTGTCGTggggggggaacgggtgactgtcgcgggggcgggggaacgggtgactgtcgcgggggcgggggaacgggcgactgtcgcgggggcgggggaacgggcgactgtcacg s panTro1.chr19 82365698 494 - 82489036 GCCCCTTCATGGGGGCAGGGGACAGGTAACTGTCACGGGGGCAGAAGAACAGGTAACTGTCACAGGGGCAG-GGGAACAGGTAACTGTCACCGGCCAGGGGAACAGGTAACTGTGACGGGGGCAGGGGAACAGGTAACTGTGACGGGGGCAGGGGACCAGGTAACTGTTACGGGGGCAGGGGAACAGGTAACTGTCACGGGGGCAGGGGAACAGGTAACTTGTTACGGGGGCAGGGGAACAGGTGACTGTCACGGGGGCAGGGGAACAGGTGACTGTCGCGGGGGCAGGGGAACAGGTAACTTGTCACGGGGGCAGGGGAACAGGTGACTGTCATGGGGGCAGGGGAACAGGTGACTGTCACAGGGGCAGCGGAACAGGTGACTGTCGGGGCAGGGGAACAGGTGACTGTCGCGGGGGCAGGGGAACAGGTGACTGTCGCGGGGGCAGGGGAACAGGAAACTGTCACGGGGGCAGGGGAACAGGTAACTGTCACA a score=8492.0 s hg17.chr17_random 161961 125 + 2618010 ggAACGGGTGACTGTCGCGGGGCCGNGGGGAACGGGTGACTGTCGCGGGGCCGGGGGAACGGGCGACTGTCGCGGGGCCGGGGGAACGGGCGACTGTCACGGGGGCGGGGGAACGGGCGACTGTC s panTro1.chr19 82366068 121 - 82489036 GGAACAGGTGACTGTCG--GGGC--AGGGGAACAGGTGACTGTCGCGGGGGCAGGGGAACAGGTGACTGTCGCGGGGGCAGGGGAACAGGAAACTGTCACGGGGGCAGGGGAACAGGTAACTGTC a score=6262.0 s hg17.chr17_random 162109 81 + 2618010 GTCGcgggggcgggggaacgggcgactgtcgcgggggcgggggaacgggcgactgtcgcgggggcgggggaacgggcgact s panTro1.chr19 82365918 81 - 82489036 GTTACGGGGGCAGGGGAACAGGTGACTGTCACGGGGGCAGGGGAACAGGTGACTGTCGCGGGGGCAGGGGAACAGGTAACT a score=9502.0 s hg17.chr17_random 162190 131 + 2618010 gtcgcgggggcgggggaacgggcgactgtcgcgggggcgggggaacgggcgactgtcgcgggggcgggggaacgggtgactgtcgcgggggcgggggaacgggtgactgtcgcgggggcgggggAACGGGC s panTro1.chr19 82366000 128 - 82489036 GTCACGGGGGCAGGGGAACAGGTGACTGTCATGGGGGCAGGGGAACAGGTGACTGTCACAGGGGCAGCGGAACAGGTGACTGTCG---GGGCAGGGGAACAGGTGACTGTCGCGGGGGCAGGGGAACAGGT a score=5669.0 s hg17.chr17_random 162321 50 + 2618010 GACTGT-CGCGGGGGCGGGGGAACGGGTGACTGTCGCGGGGGCGGGGGAAC s panTro1.chr19 82366128 50 - 82489036 GACTGT-CGCGGGGGCAGGGGAACAGGAAACTGTCACGGGGGCAGGGGAAC s canFam1.chr9 38041433 48 + 53642819 GATTGTCCGTGGAAGTTGGGGGACAGTCG-CTGTCAC--AGCCAGGGTGAT a score=-569.0 s hg17.chr17_random 162371 20 + 2618010 GNGG-TGNACNTGTNGNCNGG s canFam1.chr9 38041481 16 + 53642819 GGGGCTGAACACATCG----- a score=46391.0 s hg17.chr17_random 162391 271 + 2618010 GGCCaggggtaggtgacagtggtcaagggtgtcaattctggagccggtctgccaagcctcagggccagcctctgcttctttctag-ttatgagaccttggccatttgcttaacccttactgaCGTAACACACCCTATTTTACTGTAATAATTATATGTTTATTTCAATGTGCCATAGAGAGACGTAATCAGCACATCAATTCCCATCATTGATATTATTGTTAGGACAAAGCTAACCTGGGTATTTAAGGGATTTTTAA-GTAAGTCTGTTTA s panTro1.chr19 82366192 271 - 82489036 GGCCAGGGGTAGGTGacagtggtcaagggtgtcaattctggagccggactgccaagcctcagggccagcctctgcttctttctag-tgatgagaccttggccatttgcttaaccctcactgACGTAACACACCCTATTTTACTCTAATAATTATATGTTTATTTCAATGTGCCATAGAGAGACGTAATCAGCACATCAATTCCCATCATTGATATTATTGTTAGGACAAAGCTAACCTGGGTACTTAAGGGATTTTTaa-gtaagtctgttta s canFam1.chr9 38041497 264 + 53642819 GGACAGGGG---------AtggttaagagcacagattctggagccaaactgcctgggctcaaatgtggcttctgtctcatttcagttggtgagaccttgggcaactgactcaccctcatgtacttAATGAAAAATATTTCATTGTAATAACTACATGTTTATGTCAGTGTGCGGTAGAGAAATATAACTGACACATCGATTTCTGTCACAGGTGCTATTGTTAGGACAAAGCTAAGCTGGATATTTAAAGCAGCTTTAAGGCAAGTTGATTTg a score=373.0 s hg17.chr17_random 162662 4 + 2618010 AAGA s panTro1.chr19 82366463 4 - 82489036 aaga a score=35911.0 s hg17.chr17_random 162666 241 + 2618010 -AANAGTACTAAGTAAATAATAGTGCAGGTTCCAGTTGGGAAGCTGATTCATAAGTGATGAANGTTAAGGTAATGCCAG------------------------CTGGGGTTTTCCTTAGACCCAGTGGTCTTCGAACTGTTCCCCAGACCCTGGGAGCCCCAGAAGGTTCCAGGCAGGCAGAGATGCACAGATTAGGGGCTGGGAGAGGGGT-CAGGGTTGCTCTCCAGGGGAGCATG-AGGAAGCTGCTC------ATGGACCAAGTGCTCCC s panTro1.chr19 82366467 240 - 82489036 -aa-agtactaagtaaataatagtgcaggtTCCAGTTGGGAAGCTGATTCATAAGTGATGAAAGTTAAGGTAATGCCAG------------------------CTGGGGTTTTCCTTAGGCTCAGTGGTCTTCGAACTGTTCCCCAGACCCTGGGAGCCCCAGAAGGTTCCAGGCAGGCAGAGATGCACAGATTAGGGGCTGGGAGAGGGGT-CAGGGTTGCTCTCCAGGGGAGCATG-AGGAAGCTGCTC------ATGGACCAAGTGCTCCC s canFam1.chr9 38041958 259 + 53642819 AAA-ACTATAAAGTAAATAA---TGCAGGTCTCAGTTGAGAAGCTGGCTCATAAGCAACAGAGCCTGAGG-AATGCCAGTTTCAGGGCCTGCTTAGCTCCGCTTTGGGGTTTCAC--AGGGGTAATGGTTTTCAAACTGTTCTTCAGACCTTGGGA-CCCCAGAAG--CCTGGGCAGGTGGAGATGCATGGCCTATTGGGTGACAGAGTGGTCCATAGCAG-----CAGAGGGCCATGAAGGAAGCACCTCTGGACTGTGAGCCAGGCACTCCC a score=43518.0 s hg17.chr17_random 162907 623 + 2618010 CCTCGGTGCAATTTAAATTTGTTTATTGTGAGCTTATTTTTATCTGCTttttttagtgtggtaaaatagatataacctaagatataataccattccaaccatttttCTTTTCtttccttttcctttttttttttttttttttgagatggggtcttgctctgtcacccaggctggtatacaatggtgcagtaatggctcactgcagtctcgatctccctagttcaagggatcctccccactcctcctgagtagctgggactatgggtgcatgctaccataccccactcctttttttttttattttttgtagtgatggggtctcactgtgatgcccaggctggtctcgaatccctggcctcaagcaatcctcccactttggcctcccaaagtgctgggattacaggtgtgagtcactgtacttggtcTtttctttcttctttctttctttcctttctttctttccttctttctttctttctttctttctttccttctttctttctttctttctttctttctttctttctttctttctttctctcttttctttctttctttttcttctttcttctttttctctctttctttctctttctcttctttctctttctttctttatttct s panTro1.chr19 82366707 526 - 82489036 CCTCGGTGCAATTTAAATTTGTTTATTGTGAGCTTATTTTTATCTGCTttttttagtgtggtaaaatagacataacctaagatataataccattccaaccatttttCTTttcttttcttttcctttttttttttttttt---gagatggggtcttgctctgtcacccaggctggtatacaatggtgcagtaatggctcactgcagtctcgatctccctagttcaagggatcctccccactcctcctgagtagctgggactacgggtgcatgctaccacaccccactcctttttttttttattttttgtagtgatggggtctcactgtgttgcccaggctggtctcgaatccctggcctcaagcgatcctcccactttggcctcccaaagtgctgggattacaggtgtgagtcactgtacttggtcTTtt---------------------------------------------------tctttctttccttccttc---------------------------ctttctttctttctctcttttctttctttct----cttctttcttctttttctctct------ctctttctcttctttctctttctttcttt------ a score=3435.0 s hg17.chr17_random 163530 23 + 2618010 tttctttccttccttccttcttt s panTro1.chr19 82367233 21 - 82489036 --tctttccttccttccttcttt s canFam1.chr9 38043899 23 + 53642819 TTTTTTTCCTACttttttattgt a score=60670.0 s hg17.chr17_random 163553 664 + 2618010 ctttccttctttttttttt-gagacagggtctcactgtgttgcccagactggagtgcagtgctgagaacatgattcactgcagccccaacctcctaggctcaagcaatcctcccgcctcagcctccccagcagctgggaccacaacctaggcgcaagcaatcctcccacctcagcctccccagcagctgggaccacagggtgtgcaccactgcacccagctaatttttaaaaaacattttgtagagacagagtctcaccatctttcccaggctggtctcaaactcctgggctcaagtgatcctcttgccttggcatccctgagggctgggattacaggtgtgaaccattgtgccaggccATTTCAACAtttttt-ttttttgagatgaggtctncacnttctgttgcccaggctggagtacagtggcgtgatcttggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattataggcgaccaccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtcgtgaactcctgacctcaggtgatctgcccaccttggcttcccgaagcgctgggattccaggtgtgagccaccgtgcccagcc s panTro1.chr19 82367254 664 - 82489036 ctttccttctttttttttttgagatagggtctcactgtgttgcccagactggagtgcagtgctgagaacatgattcactgcagcctcaacctcctaggctcaagcaatcctcccgcctcagcctccccagcagctgggaccacaacctaggctcaagcaatcctcctgcctcagcctccccagcagctgggaccacagggtgtgcaccactgcacccagctaatttttaaaaaacattttgtagagacagagtctcaccatctttcccaggctggtctcaaactcctgggctcaagtgatcctcttgccttggcatccctgagggctgggattacaggtgtgaaccattgtgccaggccATTTCAACAttttttattttttgagatgcggtctgt--cttctgttgcccaggctggagtacagtggcgtgatcttggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcctgagtagctgggattataggcgaccaccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtcgtgaactcctgacctcaggtgatctgcccaccttggcttcccgaagcgctgggattccaggtgtgagccaccgtgcccagcc a score=29119.0 s hg17.chr17_random 164217 183 + 2618010 catttcaaccgcttttaagtgtacagttgagtggcattaagtacaatcacaatgttgtacaaccatcaccactatccatttcagaactctctcatcatctcaaacagaaaatgcat--ctatcaaataaaaaccccctattctctaccccaaaacctctggcaacctctattctactttcagtct s panTro1.chr19 82367918 183 - 82489036 catttcaaccgcttttaagtgtacagttgagtggcattaagtacaatcacaatgttgtacaaccatcaccactatccatttcagaactctctcatcatctcaaacagaaaatgcat--ctatcaaataaaaaccccctattctctaccccaaaacctctggcaacctctattctactttcagtct s canFam1.chr9 38043949 172 + 53642819 catgttcaccatttttaagagtatgatc-agtgg-gctaagtactttcacaacgttgtgcaagaatcactgctat---ttctagaactttttcatcttcccaaagagaaactccataatcattaaaaaataaccaccgcccctc-------aagcctctggtaacttcta-tatactttctatct a score=5573.0 s hg17.chr17_random 164400 20 + 2618010 ctacgaatttgcctattcta s panTro1.chr19 82368101 20 - 82489036 ctacgaatttgcctattcta s rn3.chr10 47566051 20 - 110733352 CTGTGGACTTGCCTATAACA s canFam1.chr9 38044121 20 + 53642819 ctctcaattcatctattcca a score=30061.0 s hg17.chr17_random 164420 98 + 2618010 ggGCTAATTTT----TTCCAACAGGCTAATACACATGCGTGGTAAGAATTCACAGAGCAAAAAAGTT--TCCCTGTCCTCTAGTGCTCTTCCCAGATGAACTGT s panTro1.chr19 82368121 98 - 82489036 ggGCTAATTTT----TTCCAACAGGCTAATACACATGCGTGGTAAGAATTCACAGAGCAAAAAAGTT--TCCCTGTCCTCTAGTGCTCTTCCCAGATGAACTGT s mm5.chr11 46230767 95 - 121648857 GGACTTATTTT----TGTTAATCAGATAATGCATGCACGTGGTGAAAATGGAC--CCCACAAAAATA--TCCCTACACCCCAGTTC-CCTCCCAAATGAATGAC s rn3.chr10 47566071 84 - 110733352 -----AAAGTT--------AACCAGATAGTGCATGCGCGTGGTGAAAATGGGC--CCCACAAAAATG--TCCCCACACCCCACTTC-CCTCCCCCATTATTT-- s canFam1.chr9 38044141 103 + 53642819 -ggCTGATTTTTTTTTTTTGAGTTGGTAATACATGTATGTAGTAAAAGTGCACAGAGCAGAAAAATGTCTCCCTATCCCCCAATTCCCTTCCCAGATGAACTAT a score=7323.0 s hg17.chr17_random 164518 26 + 2618010 GGTTACCAGTTTCCTGTTCATTCTTT s panTro1.chr19 82368219 26 - 82489036 TGTTACCAGTTTCCTGTTCATTCTTT s mm5.chr11 46230862 24 - 121648857 TCTT--TAGTTTCCTATCAATTCTGT s rn3.chr10 47566155 20 - 110733352 ------TAGTTTCCTATCAATTCTTT a score=28330.0 s hg17.chr17_random 164544 95 + 2618010 CAGAGGTATTCTGCGCATATACATACAAATATGCATGTGTATACATATCTTTTCATTTATTTACAAAGGGAATATGCTTTTTATGCCTCTTGCTT s panTro1.chr19 82368245 95 - 82489036 CAGAGGTATTCTGTGCATATACATACAAATACGCATGTGTATACATATCTTTTCATTTATTTACAAAGGGAATATGCTTTTTATGCCTCTCGCTT s mm5.chr11 46230886 89 - 121648857 CGAAGCTGGCCTCTCCATGTATAGAAGAGTGGGCATATGTGT---CATCCTTTT-TGTATACGCAAAGGAAACA--CTGTTTATGCCGCTTACTT s rn3.chr10 47566175 91 - 110733352 CAGAGCTAGCCTCTCCATATATAGACGAGTAGGCGTGTGTGT---GATCCTTTA-TTTATACGCAAAGGAAGCTCACTGTTTATGCCTTGCTCTT s canFam1.chr9 38044431 74 + 53642819 CAGAGGTATCTG----AAAGATATGAAAATATCCATGTGTGTATGCATCATTTT-----------------ATATACTGTTTATGCCTCCTCTTT a score=13151.0 s hg17.chr17_random 164639 49 + 2618010 -----TGTAACAATAAATCTGGGAGATGAAAAGATATTTAGTACATCAGAATAT s panTro1.chr19 82368340 49 - 82489036 -----TGTAACAATAAATCTGGGAGATGAAAAGATATTTAGTACATCAGAATAT s mm5.chr11 46231181 49 - 121648857 -----TAAAATAGTAAATCTGAGCAAATAACAAACTGTTAGAACATCAGAACTT s canFam1.chr9 38044505 52 + 53642819 TTTAATTTAACCATACTTCTGAG--ATGAAAAGGTTTTTAGTGCATCAGAATAT a score=91.0 s hg17.chr17_random 164639 1 + 2618010 T s rn3.chr10 47566266 1 - 110733352 T a score=1392.0 s hg17.chr17_random 164688 5 + 2618010 CAATA s panTro1.chr19 82368389 5 - 82489036 CAATA s canFam1.chr9 38044557 5 + 53642819 CAATA a score=8177.0 s hg17.chr17_random 164693 91 + 2618010 TCTCTTCCATATCAGCACACTcatctttgttaatgattgtgcagtattctattgtacaggtgaggcatactgtatttagccaatcccttat s panTro1.chr19 82368394 91 - 82489036 TCTCTtccatatcagcacactcatctttgttaatgattgtgcagtattctattgtacaggtgaggcatactgtattgagccactcccttat a score=41958.0 s hg17.chr17_random 164784 269 + 2618010 tgatggaAGCTCTTCA---------------ATTTTTAATCTGTTGCATTTATCTATTGACAGCACATGCCCACCCTTAGCAGCAGAAATGAAGTAGcactagttagcaaggagaactaattaaacataaaa------aaaacctaccagactagcaaaaattcaagtctggcaataccaagtgttgacaaggacaaggaggaactggcactgttacagatggttggtgagaatggccgtggttctaaccagtttggggagcagctaggcactctctagtcaaggtaaag s panTro1.chr19 82368485 269 - 82489036 tgatggaAGCTCTTCA---------------ATTTTTAATCTGTTGCATTTATCTATTGACAGCACATGCCCACCCTTAGCAGCAGAAATGAAGTAGcactagttagcaaggagaactaattaaacataaaa------aaaacctaccagactagcaaaaattcaagtctggcaataccaagtgttgacaaggacaaggaggaactggcactgttacagatggttggtgagaatggctgtggttctaaccagtttggggagcagctaggcactctctagtcaaggcaaag s mm5.chr11 46231696 284 - 121648857 TGATAGATACTGTTGAGTGAGACCTGTGATGACTTTCAACTTGAGACATTCATCTATTGGTGCCACATACCCACCATCAGCAGCAGACGTGAACTAGCATGAGTTAAAAGGGCAAATCAAACATCCGTAAAACTCTTGAATATCTTCTGGACCAATGGAAATCCAAGTCTGAAACTA-CAAGTGTTTAGAAGGACTTGGAGTGACAGGGAGTG-----AATGGCCGGTAGGAGTAGAAGTCATTGTAATCATTTTGGAGAGAAGTTTGGCAATATATAATCAATCTAAAG a score=32243.0 s hg17.chr17_random 165053 357 + 2618010 atatacagaccctaggcccagcaaatttcctatccaagaaactctcttaaagaaactctccctggccaggtgtggtggcacacgcctgtaatcccagcactttgcgaggctgaggtgggaggatcacttgagctcaggagtttcagactagcctgggcaacctggcaaaccctttctctacaaaaattataaaaattagccagatgtggtggtatgtgcctgcagtcccagctacntcgggaggctgaggtgggaggatcgcctgagcccagggaggttgaggctgtggtgagccgagatggtacgactgaactttagcctgggcaatagagtgagaccctgtctcaaaaaaagaaa s panTro1.chr19 82368754 353 - 82489036 atatacagaccctaggcccagcaaatttcctatccaagaaactc---taaagaaactctccctggccaggtgtggtggcacacgcctgtaatcccagcactttgcgaggctgaggtgggaagatcacttgagctcaggagtttcagactagcctgggcaacctggcaaaccctttctctacaaaaattataaaaattagccagatgtggtggtatgcgcctgcagtcccagctac-tcgggaggctgaggtgggaggatcgcctgagcccagggaggttgaggctgtagtgtgccgagatggtacgactgaactttagcctgggcaatagagtgagaccctgtctcaaaaaaagaaa a score=32391.0 s hg17.chr17_random 165410 200 + 2618010 tcccatatacagaccaggaaacagga----------atagccattgcagcatgttgatgatagccacgcataggaaccagcttaaatgatcaacaataggagaaaagagaaataaattatggcgtattcacatagtggaacagtagacagcaataaaaacaaactatagctagatgcatctacaggaaaaaacttcacaaataataataa s panTro1.chr19 82369107 200 - 82489036 tcccatatacagaccaggaaacagga----------atagccattgcagcatgttgatgatagccacgcataggaaccagcttaaatgttcaacaataggagaaaagagaaataaattatggcgtattcacatagtggaacagtagacagcaataaaaacacactatagctagatgcatctacaggaaaaaacttcacaaacaataataa s mm5.chr11 46232360 209 - 121648857 CTCCACAGAAAGAAAAGGAAAAAGAAATGAATAGTGATAAGCATTATAAAGTATTGGTGATAGCCAAGCAAAGAGATCAGCTTAACTGCTCAAAAACAGAGGAAAGGAGAAAGATCGTATACTGTGTTCACCTTGTGGGACAATTTGTAGTGGTGAGAGCAAACTGTAGCTATATACATA-GCTGGAATAAATCTTAGAAACAACAATGA a score=23514.0 s hg17.chr17_random 165610 270 + 2618010 gccaaaaatgagtttaatgaggttatgtatagtatgatgccatttttacaaagttttaaagcttgcaaaacaataccatatattgtttataggtacacacatttgtagtaaatgtaaaACTCAGTTCATGTAagcctgggcaacatagcaagacccatctttaaaaaataaaacataaaaagattaactggacgtggtggtgcatatctgtggttctggctattgaggaggctgagatgggaggatcacgtgagcccaggagttcaagac s panTro1.chr19 82369307 267 - 82489036 gtcaaaaatgagtttaatgaggttatgtatagtatgatgccatttttacaaagttttaaagcttgcaaaacaataccatatattgtttataggtacacacatttgtagtaaatgtaaaACTCAGTTCATGTAagcctgggcaacatagcaagacccatctttaaaaaataaaacataaaaagattaactggacgtggtggtgcatatctgtggttctggcta-taaagaggctgagatgggaggatcacg-gagcccaggag-tCAAGAC a score=29358.0 s hg17.chr17_random 165938 334 + 2618010 tctctaaaaaaaaaaaaaaaaaaaaaaGGCGGGGGGTgccaggtgtggtggttcacacctgtaatcccagcactttgggagactgaggcgggcagatcacctgaggtcaggaattcaagaccagcatggccaacatggtgaaaccccatctctactaaaaatacaaagaactacgcccgccaaacatggtggcagtcacctgtagtcccagctactcaggaggctgaggcaggaaaattgcttgaacccggganggtggaggtggcagtgaaccgagatcgtgccattgcacttcagcctgggcaacagagtgagactct--ctcaaacacaaaaa s panTro1.chr19 82369674 333 - 82489036 TCTCtaaaaaaaaataaaaaaaaaa--GGCGGGGGGTgccaggtgtggtggttcacacctgtaatcccagcactgtgggagactgaggcgggcagatcacctgaggtcaggaattcaagaccagcgtggccaacatggtgaaaccccatctctactaaaaatacaaagaactacgcctgccaagcatggtggcagtcacctgtagtcccagctactcaggaggctgaggcaggaaaattgcttgaacctggga-ggtggaggtggcagtgaaccgagatcgtgccattgcacttcagcctgggcaacagagtgagactctgtctcaaacacaaaaa a score=45742.0 s hg17.chr17_random 166272 101 + 2618010 GTGGAACACGTTATCATTGAAAGCTACCACTTGCATTGTTAATTCCTTTGAATTGCATCATGAATTCAAAGCGATTGGAGGGAACATTTGTGGCTGTTGGC s panTro1.chr19 82370007 101 - 82489036 GTGGAACACGTTATCATTGAAAGCTACCACTTGCATTGTTAATTCCTTTGAATTGCATCATGAATTCAAAGCGATTGGAGGGAACATTTGTGGCTGTTGGC s mm5.chr11 46234156 100 - 121648857 GTGAAGTGAGCTATAATTGAAAGTTCTTGCTTGCATTGTTAATACTTCTGAATTGCATCATTAATCTGAAGCCATTTGCCTTGAGTTTCAAAATTATTAG- s rn3.chr10 47571236 101 - 110733352 GTGAAGCGAGCTATAATTGAAAGTTCCTGCCCGTGTTGTTAATGCTTCTGAATTGCATCATTAATCCGAAGCCATTTGCCTCAGGTTTCAAAATTATTAGT s canFam1.chr9 38045989 98 + 53642819 GTAGAATGAGTTAAAATTGGAAGCCACTATTTGCGCTGT---GCTTTCTGAATTGCATCATTAATATAAAGCTGTTTGAGGGAACATTTGTGGCTATTGAC a score=3823.0 s hg17.chr17_random 166373 17 + 2618010 CCTGGGTTTC-----CACCAGC s panTro1.chr19 82370108 17 - 82489036 CCTGGGTTTC-----CACCAGC s mm5.chr11 46234256 17 - 121648857 TTTGGTTTTC-----TTCCTGC s canFam1.chr9 38046087 21 + 53642819 -CTGGATTTCAAAATTGCCAGT a score=0.0 s hg17.chr17_random 166390 2 + 2618010 CC a score=600.0 s hg17.chr17_random 166390 2 + 2618010 CC s panTro1.chr19 82370125 2 - 82489036 CC s mm5.chr11 46234273 2 - 121648857 CC a score=611.0 s hg17.chr17_random 166392 3 + 2618010 TGG s panTro1.chr19 82370127 3 - 82489036 TGG s canFam1.chr9 38046108 3 + 53642819 TAg a score=4156.0 s hg17.chr17_random 166395 19 + 2618010 GCTAGTTAGAGTTTCTACT s panTro1.chr19 82370130 19 - 82489036 GCTAGTTAGAGTTTCTACT s canFam1.chr9 38046328 19 + 53642819 GCCAGTTAGAGCTCCTGCC a score=368265.0 s hg17.chr17_random 166414 1149 + 2618010 CATTCTAATTCATGTATAATGCTGAGATGTTCACTTCAGTCATGAAGA---------------CCCTGGGCTCTAGTGGTCCCCAGGCCTG------------TGGGAGGGA---------------GGCTGATCTGTGCTGT---GATGTAAGCCTCAGGCTCTGCCCCTCTTTCTCCCAGAGGTCATTTCTAGAGCTTCCCCAGAGGATTCAGCATTAT---CCCTCTGTGACATCTAATCTCTTGCCTT--AGGCAACCTGATCCTGGGCTAAGTCTCTCCTGGCAGGGGAGCC--------TCTCACC-CGGCC--------TCTTTCCA---------------------ATCC-----------------CACAGCACAGACCTTGGCAGTGTGGAGGGAGAGAGCC-TGGTTCTT-------------------------------------------------------------CTGCCGAG--CCCTGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCTTCTGGTGTCCCAGGATAGAAGAAAGACTCA-CATTTCTTTGCACCATTGAGCCCATCACTGCAGCACC-AGAGCATCTGACATCTGCAAAACAACATCNATTAGGTAGGTGTTAACTTTTCCCCACTGGTAGGCCTGGTGCTCGTAAATGTACTGTGACGAGTGTAATGTGTTTAT-----GAGAATGCGCATAA---ATTATCAGAAATAGGCTGCATTTTTAATATCACTTAATATATCAAGTTGGCCTCTAAGCAGCCACACGCTATATTGCAAATGTTGA-GCTGACTTGCTGGCATCAGTGCTCCATCATGCTCTCCATGCCGAGGCCATAGCGTATGCCAAG----AAGGAGGCAAGGGACCCCNTAGAGTGG-TGGTTCCTACCTC-----CCTTCCTGACTTCCCCTCCATCATCTGGAATCTAAAGAAAAAT-GGgcttcatttatcactgagccccctacagatcacagctcggggcctgttacagggcaggtgcacaataaatatttgttgaaATGTGGCTTCATGAATAAATGAATGGACAAGAGACCTTGGAATGCCCCTCTCCATCAACCAGCAACATTGTTTGGATTTCCTCCATCCAAGCACCTCTGTTGGGTTAAAATTTTCTGTTAATACAGAGAACGTTCTATTAGCACAGCAGGACAAGATCTCCTCCGGTTATCAGGGA-----------------A---------GGGTGGAAACGGGGGACACATATTAGGCCTGGGTC-----AGAGAGGGCCCT-TCTTCTCCGGGCACATGGACACCAGCCA-AGATGCCAACCAAGGAACATCCAGCCAAGTGCTGCACAGAGGGCATTTCCTCAACAAC s panTro1.chr19 82370149 1150 - 82489036 CATTCTAATTCATGTATAATGCTGAGATGTTCACTTCAGTCATGAAGA---------------CCCTGGGCTCTAGTGGTCCCCAGGCCTG------------TGGGAGGGA---------------GGCTGGTCTGTGCTGT---GATATAAGCCTCAGGCTCTGCCCCTCTTTCTCCCAGAGGTCATTTCTAGAGCTTCCCCAGAGGATTCAGCATTAT---CCCTCTGTGACATCTAATCTCTTGCCTT--AGGCAACCTGATCCTGGGCTAAGTCTCTCCTGGCAGGGGAGCC--------TCTCACC-CGGCC--------TCTTTCCA---------------------ATCC-----------------CACAGCACAGACCTTGGCAGTGTGGAGGGAGAGAGCC-TGGTTCTT-------------------------------------------------------------CCGCCCAG--CCCTGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCTTCTGGTGTCCCAGGATAGAAGAAAGACTCA-CATTTCTTTGCACCATTGAGCCCATCACTGCAGCACC-AGAGCATCTGACATCTGCAAAACAACATC-ATTAGGTAGGTGTTAACTTTTCCCCACTGGTAGGCCTGGTGCTCGTAAATGTACTGTGACGAGTGTAATGTGTTTAT-----GAGAATGCGCATAATAAATTATCAGAAATAGGCTGCATTTTTAATATCACTTAATATATCAAGTTGGCCTCTAAGCAGCCACACGCTATATTGCAAATGTTGA-GCTGACTTGCTGGCATCAGTGCTCCATCATGCTCTCCATGCCGAGGCCATAGCGTATGCCAAG----AAGGAGGCAGGGGACCCC-TAGAGTGG-TGGTTCCTACCTC-----CCTTCCTGACTTCCCCTCCATCATCTGGAATCTAAAGAAAAAT-GGgcttcatttatcactgggccccctacagatcacagctcggggcctgttacagggcaggtgcacaataaatatttgttgaaATGTGGCTTCATGAATAAATGAATGGACAAGAGACCTTGGAATGCCCCTCTCCATCAACCAGCAACATCGTTTGGATTTCCTCCATCCAAGCGCCTCTGTTGGGTTAAAATTTTCTGTTAATACAGAGAACGTTCTATTAGTACAGCAGGACAAGATCTCCTCCGGTTATCAGGGA-----------------A---------GTGTGGAAACGGGGGACACATGTTAGGCCTGGGTC-----AGAGAGGGCCCT-TCTTCTCCGGGCACATGGACACCAGCCA-AGATGCCAACCAAGGAACATCCAGCCAAGTGCTGCACAGAGGGCATTTCCTCAAAAAC s mm5.chr11 46234366 1346 - 121648857 CATTCCAACCCATTTACAATACTGCAATGTTTAGTCCCATGGGGAAGATTCCTTAAACCAAAGCCCTGAACCCTCGAACCCTCGAACCCTTGAACCCTCTAACTGGAAGTGA--------------TGACTGATGGGTGCTGTCCCAACCTAAGGCTCAGGCCACACCTTCCCAACCACCATGGGTCATATCTGGGGGTTCCCAACAACAT--AGCACTGT--GTCTTGTGGGCCATCTGATCTC---CCATAAAGATGGTCTGACTTCAAGCT--GTCTCTTCTGGCAGGTGAACCCGCCTCTGTCCAGCC-TGGCCGCCTATGGTCTGGCCAGAGCAGAGGAACAGAGTCTGGATCCTGGCCAGGGTAGAGGGACAGGGCCCAGTTCTGGCTAGTATAGAGGGACAGGGTC-TAGTCCTCCACCTCCAATGTGTGGGGTCCAAATATCAAT----------------------AAACTTGGCTGTTGAG--TCCCAGGTCTGCCTCGTGGAACATGGAGCCAGGCCCTCCATCTCTCTAGGCCTCAAGTTCTAGAGAACAAGGCGGGTGAGGGGCTTGAAGAC-----------------------------------------------------------------------------------------------------------CCA---------------------------------------------------------------------CACTCTACAGGTGTTGTAGGAGAGAGGGAAGACCAAGCCCCTCTCTGGGCTCTTTAGCTCATTAGCAATGCTCC-TGAGCATTCGACATCTGCAA---AACCTC-ATTAGGTAACTGCTAACTCATCCCTTCTGCTAGGCCTAGCACTCATAAATGTACTGTGACGAGGGCGGTGTGTTTATGAGAAGAGAATATACACGATAAATTAGCCGGCA----------TTTTAATATTGCTTAGCACATT--GTTCGCCCTGCAGCAGACACCATCTATATGGCAAACACTGACGCTGACTGGCTTGGGTCGGCACTC-------------------AGGTC--AGTGTAGGTGAAGGTATAAGGAAGAGAGGTGTCCC-CAGAGTG---AGTGCCTGACTCCCAT-CCCTCCTGATTTACCCTCCACAGTCCAGAATCTAAAGAGATGCGGGGCTTCATTTCTATGGCAGCCCCCTGCAGACTGCAGTGCAGAG-CTATTGCAGAGGACATACTGGGTAAACATTTGTTGAAGTGTGGAGTCATGAATAAATGAACGGACAAGAACCCCTGGACGGTGCCTCTCCACCAACCAGCAACGGTGTTTGGAGTTGCTCTGCC--GGACTCTCTTTTGGGTTAAAATTCCCCATTAATACAAAGAAAGTTCTCTCAGTCCAGCCTTGCAAGAGCTCCTTCAGTAATCAGAGAAAGAAGAGCAAGCTGTGA---------GTGTGGGGAGTGGGGG-----AGTGGGCAGGAACC-----AGCCACAGCCTTCCCTCCCCCATGTACACAAATACTAGCTAGGGACACCAATCAAAG-ATGTCCAGCCAACTGCTGAGTAGAGGCGGTTTTCTCAATCAT s rn3.chr10 47571450 1327 - 110733352 CATTCCAGCCCACTTACAATAGTGCAATGTCCAATCCCATGGGAAAGATTCCTTAAACCAAAGCCCTGAACCCTAGAGCCCTCTAACC---------------TGGAAGTAA--------------TGACTCATAGGTGCTGGCCCAACCTAAGGATCAGGCCACACCTTCGCAAC-CCCATGGGTCATATCTGAGGGTTCTCAAGGAC----AGAATGATGGGCCTTGTGGGCCATCTGATCCC---CTAA--GGATGTTCTGACTTCAGGCT--GTCTTTCCTGGCAGGTGAATCCGCCTCTGTCCAGCC-TGGCCGCCTATGGTCTGGCCAGAGCAGAGGAACAAGGTCTAGATCCTGGTCAGTGTAAAGGATCAGAGCTCAGTTCTGGCTAGTATAGAGAGACAGGGTC-TAGTCCTT-------------------CTCTGCCTCCAATAGGTGGGACCCAAATGTCAAGAAACTTGGCTG-AGAA--TCCCAGGTTTGCCTCGTTG-------------------------------------------------------------------------AACATGGAGCCCAGCTTCCATTTCTCCAGCCTCGAGTTCTAGAGAACAAGAGGGGTGAGGGGCTCCAAGAC------------------------------------CCA---------------------------------------------------------------------CACTGTACAGGTGTTGTAGGAGAGAGGAAAGACAAAGACCCTCTCCGGGCTACTTAGCTCATTACCAGAGCTCC-TGAGCATTTGACATCTGCAA---AACCTC-ATTAGGTAAATGCTAACTCGTCCCTTCTGCTAGGCCTAGCACTCGTAAATGTACTGTGACGAGGGCGGTGTGTTTATGAGAATAGGATGTACATGATAAATTATCTGGCA----------TTTTAATATCGCTTAGCACATC--GTTCGCCCTGCAGCAGACACCATCTATATGGCAAACACTGAAGCTGACTGGCTTGGGTCGGCCCTC-------------------AGGTC--AGTATAGGCAAAGGAATAAGGAAGGGAGGTGTCCC-CAGAGTG-------CCTGACTCCCATCCTTTCATGATTTACCGTCCATGGTCCAGTATCTAAAGAGAAACGGGGCTTCATTTCATAGGCAGCCCCCTGAAGACTGCAGCGCAGGG-CTATTGCAGAGGATGGGCTGGGTAAACATTTGTTGAAATGTAGAGTCACAAATAAACGAACGGACAAGACCCCCTGGACGGTGCCTCTCCACCAAACAGCAACAGCGTTTGGAGTGGCTCTGCT--GGGCTCTCCTTTGGGTTAAAACTTCCCATTAATACAAAGACAGTTCTATCGGCACAGCCTTGCAAGAGTTCCTTCAATAATGAGAGGAAGAAGGACA-------AGCTGTGACGGTGTGGGGAAGCAGGG-----AGTAGGCAGGAACC-----AGCAACAGCCTCCCCTCCCCCACAAACATGAATACTACCTAGAGACACCAATCAAAG-ATGTCCAGCCAGCTGCTGAGTAGAGGCCATTTCCTCAAACAT s canFam1.chr9 38046347 1239 + 53642819 CATTCTAACCT-CCCATAATGCTGACATGACCACCCCAGTCCCAGAGA--CACTGAGACAAGACCCTTGGCTCCAGGGGCCCGTAGGTCTC------------TGAGGGCAGGGTGGTGGGGCCACTGCCTCCTCTGTGCTGT---CACCCTAGCCTCAGGCTACACTCTTGT-CCTCCAGCAGGTCATTTCTGGAGCTTCCCT-TAAGATTCAGCATTAT---CTTTTGCTGGCATCTGATCTCCAGCCAG--AGGGAGCCTGATCCCAGGCAAGCCCCCTCCTAGCAGATGAGCT--------TCTCACCGGGGTC--------TCTTTCCT---------------------GTCC------------AGCAGCACAGACCACACCCTGCATG---AGGGAGACAGGGCTGTGGTCCTT-------------------------------------------------------------CTACCCAAACCcctgggtatgagtc------------------------------------------------------------------------------------------------------------------------------------------------tggctctaccttgtgtgaccttgggccaggttctccatctccacaggcctgtttcctcacataggaatcgagggggGCGAGTGAGGGGCTCACACGTCTGTGGTCCACACACCACTGAACAGGCGTCCCAGAAGGGGAAGACGACGAG---CATCTCTAAGCCATTTAGCCCATGATGGCAGTTCCAAGAACATTTGACATCTGCAA---AACATC-ATCAGGTAAGTGTTAACTTTTCCCCACTGATAGACCTAATGGTTGTAAATGTACTGTGACGAGTGTAATCTGTTTAT-----GAGAATGTGCATAATAAATTATC--------------------------------ACATCAAGTTTGCCCT-CAGCAGCCACAGGCTCCACTGCAAACGCTTGCGGTGACTTGCTT-CCTCAGCACTCCACCATGCTCTCCATGCTGAGGCCACCGTGTGGAGCAAG----GAGGAGGCAGCCATTGGC-CAGAGTGGAAGGCTCCCAGGTC-----CCTTCCTGATCTGCCctccatca-ctggaatctaaagacaaaggggacttcat----caccaggccccctgcagaacgcaa--cagagcctgtcacagcctaggtgctgaataagtacttgt--aaatgt--------------atggatTTTCAAGAGACCCTGAAAGG--CCTCTCCATCAACCAGCCACAGGGCTTAGAATTTGTCCCTC--AGGCCCTCCTTTGGGTAAGACATTCCTATGAATACAGAGAAGGTTCTTTCAGCACAACATGCTAAGAGCTCCTCCAGTAATCAAGGA-----------------A---------TAGTGGAAATTGGGGGTACATGTTAGGCCAGAGCCCAGGAGGGGGGGGCGCCCTCCTCCCAGGGCACTTGGACACCAGCCAGAGATGCCAACCAAGG-ACATCTAGCCAAGTGCAGAGT------CATTTCCTGTGAAAT a score=2850.0 s hg17.chr17_random 167563 6 + 2618010 ACACGT s panTro1.chr19 82371299 6 - 82489036 ACACGT s mm5.chr11 46236054 6 - 121648857 ACATAT s rn3.chr10 47572777 6 - 110733352 GCATGT s canFam1.chr9 38047586 6 + 53642819 GCCTGT a score=9369.0 s hg17.chr17_random 167569 37 + 2618010 TACCTACTCTAAGAAGAGCCATTAACTGGTCCTTCTC s panTro1.chr19 82371305 37 - 82489036 TACCTACTCTAAGAAGAGCCATTAACTGGTCCTTCTC s mm5.chr11 46236060 31 - 121648857 TGTCTACTAAAAGGAAAGGTATTCACTGTTT------ s canFam1.chr9 38047592 37 + 53642819 CACCTACTGAAAGGAAAGGCTTTAACTGTTCATTCTC a score=91.0 s hg17.chr17_random 167606 1 + 2618010 t s panTro1.chr19 82371342 1 - 82489036 t a score=45722.0 s hg17.chr17_random 167607 513 + 2618010 gccgagaccagcttggtcggggagaccctaacccagcggcgctagaggaattaaagacacacacacagaaatatagaggtgtggagtgggaaatcaggggtctcacagccttcagagctgagagcccggaacagagatttacccacgtatttactaacagcaagccagtcattggcattgtttctatagatgttaaatcaactaaaagtatcccttatgggaaacgaagggacgggctgaattaaaggaataggttgggctggttaactgcagcaggnagcatgttcttaaggcacagatcactcacggtattgtttgtggcttaagaacgcctttaaggggttttccgtcctgggcgggccgggtgttccttgccctcattccggtaaacccacaaccttccagcggagccgttagggccattatgaacatgtcacagtgctgcagaggttttgtttatggccagttttggggccagtttatggctagattttggggggcctgctcccaaca s panTro1.chr19 82371343 512 - 82489036 gccgagaccagcttggtcggggagaccctaacccagcagcgctagaggaattaaagacacacacacagaaatatagaagtgtgaagtgggaaatcaggggtctcatagccttcagagctgagagccccaaacaaagatttacgcacatatttattaacagcaaaccagtcattggcattgtttctatagacattaaattaactaaaagtatcccttatgggaaacaaagggatgggctgaattaaaggaacaggttgggctggttaactgcagcagg-agcatgttcttaaggcacagatcactcacggtattgtttgtggcttaagaacgcctttaaggggttttccgtcctgggcgggccgggtgttccttgccctcattccagtaaacccacaaccttccagcggaggcgttagggccattatgaacatgtcacagtgctgcagaggttttgtttatggccagttttggggccagtttatggctagattttggggggcctgctcccaaca a score=431.0 s hg17.chr17_random 168120 6 + 2618010 CTTCTC s panTro1.chr19 82371855 6 - 82489036 CTTCTC s mm5.chr11 46236091 6 - 121648857 AGTCTG a score=971.0 s hg17.chr17_random 168126 4 + 2618010 CACC s panTro1.chr19 82371861 4 - 82489036 CACC s mm5.chr11 46236097 4 - 121648857 GACC s canFam1.chr9 38047629 4 + 53642819 AGCC a score=133009.0 s hg17.chr17_random 168130 365 + 2618010 GGGAAAGAGGTCAGAATACCCAA----ACAGGAGG--------------------------------AGATCAGACTCCCCACTGTGGCTTTGCCAAACCTCTCTGGAAATT----CCAACACCTGCCTTGGGTTAGTCACTCACTTCCCCAGTGAAGAATCATTAAATATTGAGAGATGTCACTGATGGGCATATGTTACACATGTGAACAGT-ATAGAGGCAGCCCAGCAGGTTGAAAATCACCG--TTAAACCATTAGCACCCTCTAACCcagcgagtct--caaccttcactgtgcaccagaatcatc-aggggcgcttgttaagatgcatcctgagtgtgcacacacatattctgagtcagtgggtgtgagatgggggcctggaatctgcattattgatagacatc s panTro1.chr19 82371865 365 - 82489036 GGGAAAGAGGTCAGAATACCCAA----ACAGGAGG--------------------------------AGATCAGACTCCCCACTGTGGCTTTGCCAAACCTCTCTGGAAATT----CCAACACCTGCCTTGGGTTAGGCACTCACTTCCCCAGTGAAGAATCACTAAATATTGAGAGATGTCACTGATGGGCATATGTTACACATGTGAACAGT-ATAGAGGCAGCCCAGCAGGTTGGAAATCACCG--TTAAACCATTAGCACCCTCTAACCCAGCAAGtct--caaccttcactgtgcaccagaatcatc-aggggcacttgttaagatgcatcctgagtgtgcacacacatattctgagtcagtgggtgtgagatgggggcctggaatctgcattattgatagacatc s mm5.chr11 46236101 346 - 121648857 AAAAAGAAGGCC-------------------------------------------------------AAATCAGACTCCCAACTCTGACTTTGCCAAATCTTTCTAGAAATG----CCCCCACAATTCCT--GTTAGGCACCTATTTCCTCAGGTCAGAGTTGCTAAACACTGAGAGGTGCTGTCAGT-GGTGTGTGTGACAGGTGTGAACCGTGATGGGGGGCCACCTGCAGCTTGGGCATCATGGTATCAAGCCATTAGCACCTTTTAACCCAGCAATTCC--CAGCCTTGGCTGTGCGTAAAAATAATCTAGAGGTGTTTGTTTAGACACATCC-GAAAGTGCACTCGCCTATTCTGGGTCAGTGGGTGTGAGGTGGGGCCCCGGAATCTGCATTATTCATAACCATT s rn3.chr10 47573259 400 - 110733352 AGGAAAGGTATCACAACATGAAA----AAAAAAGGAAAGGTATTCACTGTTCATTGTGGACCAATTAGAAGCAGACTCCCAAGTCTGACTTTGCCAAACCTTTCTAGAAATGCCCCCCCACCCCCGACTCCTGTTAGGCACCTGTTTCCTCAGGTGAGAGCTGCTAAACACTGAGAGGTGCTGTCAGT-GGTTTGTGTGACAGGTGTGAACCTT-GCTGGGGGCCAGCTACACACTGAGCACTGTGGTATCAAACCATTAGCACCTCTGAACCCAGCAATTCC--CAGCCTCTGCTGCGTG--AAAATAATCCAGAGGTGTTTGTTTAGACACAGCT-GAAAGTGCACTCACCTATTCCGGGTCAGTGGGTGCGAGGTGGGGCCCTGGAATCTGCGTTATTCATAAGCATC s canFam1.chr9 38047633 300 + 53642819 AGGAAAGAAGTCTCAATGCCCAAAGCGACATGTGG--------------------------------GGAT-----------------CTTTGCCAAAGCACTCTAGAAATT----CCAACACC--------------CACCCCCTCCCT-------------------------GGGTGTCGTACAT-TGTTCAT----------TGAACAGT-GTGGAGGCAGCAAGATGAGTTGAGAATTA-----TTAAACC-TTGGCACCCTCTAACCcagcaattcttataaaaataattgtgcataaagataatccaggggtgctggttaagatgcatcctgagtcttcgcgcacata-tctgactcagtgggtgtgaggtagggacctggaatctgcatcattaataagcatc a score=100.0 s hg17.chr17_random 168495 1 + 2618010 c s canFam1.chr9 38047933 1 + 53642819 c a score=300.0 s hg17.chr17_random 168495 1 + 2618010 c s panTro1.chr19 82372230 1 - 82489036 c s mm5.chr11 46236447 1 - 121648857 C a score=423.0 s hg17.chr17_random 168496 3 + 2618010 tgg s panTro1.chr19 82372231 3 - 82489036 tgg s canFam1.chr9 38047934 3 + 53642819 tgc a score=26202.0 s hg17.chr17_random 168499 282 + 2618010 gctgggtgtggcaactcacgcttgtaatctcagcattttgagaggccagggcaggaaaatcatttaaagccaggagtttgagactagccagggtaacatggcaagaccccgtctctacaaaaattttaaaaattagctggggatggtggtgcatgcatttggtcccagatacttgagaggctgagttgggaagatcacttgagcctcgggaggtcgaggttgcagtgagccatgatcacaccactgcactccagcctcagtgacaaagtaaatagacatgct s panTro1.chr19 82372234 282 - 82489036 gctgggtgtggcgactcacgcttgtaatctcagcattttgagaggccagggcaggaaaatcatttaaagccaggagtttgagactagccagggtaacatggcaagaccccgcctctacaaaaattttaaaaattagctggggatggtggtgcatgcatttggtcccagatacttgagaggctgagttgggaagatcacttgcgcctcgggaggtcgaggttgcagtgagccatgattgcaccactgcactccagcctcagtgacaaagtaaatagacatgct a score=602.0 s hg17.chr17_random 168781 3 + 2618010 agt s panTro1.chr19 82372516 3 - 82489036 agt s mm5.chr11 46236453 3 - 121648857 GGT a score=8979.0 s hg17.chr17_random 168784 34 + 2618010 gctacagatacctggaccattttttaaagaaccc s panTro1.chr19 82372519 34 - 82489036 gctacagatacctggaccattttttaaagaaccc s mm5.chr11 46236456 34 - 121648857 GGGACAGACAGCCCAGCCATCCTTTGTGAAGTCT s canFam1.chr9 38047938 34 + 53642819 ggtacagacacctgggccagccttcgaggaacgc a score=10576.0 s hg17.chr17_random 168818 158 + 2618010 -actgTATCTCACTTGACAGGAGGAGCCTTTGAGAGGGTCTGTGGGGAGTTGGGAGAAA----GCTCA--GAAGCTTGTTGGGAAAAGCAGAAGGCAGAGAGGCAAG----GGCACAGGGCTTCTGAGGACTGTGACCAAGGGCAGACTCCATCCACTTAACTTTGCCA s panTro1.chr19 82372553 155 - 82489036 -actgTATCTCATTTGACAGGAG---CCTTTGAGAGGGTCTGTGGGGAGTTGGGAGAAA----GCTCA--GAAGCTTGTTGGGAAAAGCAGAAGGCAGAGAGGCAAG----GGCACAGGGCTTCTGAGGGCTGTGACCAAGGGCAGACTCCATCCACTTAACTTTGCCG s mm5.chr11 46236490 69 - 121648857 -GTTTTA------TTGGCAGAGG--GCCTTTGAGAGAGTCTGCAGGG----GAGAGAAA---------------------------------------------------------------------------------------ACTGCACTCTCTGAACCTTGCCG s rn3.chr10 47573676 81 - 110733352 -AGTCTATTTTATTTG-TAGAGG--GCCTTTGAAAGAGTCTGCAGAG----GAGAGAGACTGTACTCACTGAATCTTGTGGGGGATA--------------------------------------------------------------------------------TG s canFam1.chr9 38047972 141 + 53642819 acttCTACTTCATTGGATGGGGG--CCTTTTG-------------------GGGGTGGT----GCTCG--GAAGCCTGTTAAGAGAAGCAGGTAGAAAGGAAGCAAGTATAAGCACAGGGTTCCTGAGGGCTATGACCTAGGGCAGACTGT-CCCACTCAACTTCATTA a score=43403.0 s hg17.chr17_random 168976 180 + 2618010 GAGGCTG------GTCCAGCTGCCCAGC-TGCCCACCTCAGCATGGGGAATGGAAGGCAACATGATTGATGAGCCTTTGGACATATCCAACT--GCTTAGAGATGCCCACACAT-----------------------GC----CAGCCAGCG-CCCAGCCTTGGC--AAGTGCATCCA----------------------------TT---------TCTC-----------------------------------ACCTGGTCCTGGCAGCAGACAGGGAGCAGCCAACC s panTro1.chr19 82372708 180 - 82489036 GAGGCTG------GTCCAGCTGCCCAGC-TGCCCACCTCAGCATGGGGAATGGAAGGCAACATGATTGATGAGCCTTTGGACATATCCAACT--GCTTAGAGATGCCCACACAT-----------------------GC----CAGCCAGCG-CCCAGCCTTGGC--AAGTGCATCCA----------------------------TT---------TCTC-----------------------------------ACCTGGTCCTGGCAGCAGACAGGGAGCAGCCAACC s mm5.chr11 46236559 211 - 121648857 GGGGAGGGGGGAAGTTCTGCTGCGGAGC---CCCA---------------------GCAGCATGATTGATTAAAC-TTGGACATATCCAGCT--GCGTGGAGATCCCCACCCCTCCACCCCACCCCCACCACCTCCCGC----CAGCTGGTA-CTCAGCATTGGC--AAGAACATTCGCTTCTCGGTAGGTTTCTAGTCTATGTCCTT---------CCTC-----------------------------------ACTTGGTTCTGGCAATAGACA--GAGCAACTGACT s rn3.chr10 47573757 194 - 110733352 GGGGGCA------GTTCTGCTGCAGAGC-TGCCCACCCCA----------------ACAGCATGATTGATTAAAC-TGAGACATACCCAGCT--ATGTAGAGATCCCCACCCCC----------------------TGC----CAGCTGGTA-CTCAGCATTGGC--AAGAGCGTTCA----------------------------TT---------TCTCAATAGGTTTCTTGTCTCTTTGTCT---ATGTCCTTACCTGATCCTAGCAACATACA--GAGCAGTTGACT s canFam1.chr9 38048113 178 + 53642819 AGGGCCG------ATTCAGCTGCCAA----------------------CATGGAAGGCAACATGACTGATGGAGT-CTGGACACGTCCAGGT--GCTAAAAGATGCTCATTCAT-----------------------GC----CAGTCAGCACCCCAGCCTGGGC--AAGTACATTCA----------------------------CT---------TCTC------------ACTGCACTTCCCCCAGCATCCTCACCTGGTCCTTGCAGAAGA----GGGCGGCCAAAT s galGal2.chr19 6596766 191 + 9463882 GAAGCAG------GCACTGCTGCCCTGCATGCCCA---CAACCCGGAGCTTTGAAAACCACAAAAC----GAAACGCCGACTATTTTGGGATTCGCGTGGAAATGGCAACATAT-----------------------GCTGAGCGTTCAGCA-TCAAACCCTGCCCAAAGTCGGGCTG----------------------------TTTTGGGCCCGTCCC-----------------------------------AAATGGCTCCGGATGCAGCCAGGGAGCAGCCATCC a score=14457.0 s hg17.chr17_random 169156 37 + 2618010 ACATGTCACTGGTAGAGAAATCAAGGCAGGCACTGGG s panTro1.chr19 82372888 37 - 82489036 ACATGTCACTGGTAGAGAAATCAAGGCAGGCACTGGG s mm5.chr11 46236770 31 - 121648857 GCATTCACCCAAGAGAGAAACTGAGGCAGGC------ s rn3.chr10 47573951 31 - 110733352 GCATTCACCCAATAGAGAAACTGAGGCAGGC------ s canFam1.chr9 38048291 37 + 53642819 ATACTTCACTGATAGTGAAACTGAGGCAGGCTCAGGG a score=2085.0 s hg17.chr17_random 169193 20 + 2618010 AGCGCAATGACAGTTTGCAT s panTro1.chr19 82372925 20 - 82489036 AGTGCAATGACAGTTTGCAT s mm5.chr11 46236801 9 - 121648857 -----------AGGTAGCAT s rn3.chr10 47573982 9 - 110733352 -----------ACATGGCAT a score=-5088.0 s hg17.chr17_random 169213 120 + 2618010 CAGGAAGGTTTGCACCAGGACGATTNGCACCAGGAAGTTTTGCACTGGGACGGTTTGCACCAGGAAGGTTTGCACCACGA--------------------------------CGATTTGCACCAGGAAGGTTTGCACCACGACGATTTGCAC s panTro1.chr19 82372945 152 - 82489036 CAGGAAGGTTTGCACCAGGATGATTTGCACCAGGAAGTTTTGCACTGGGACGGTTTGCACCAGGAAGGTTTGCACCACGATGATTTTTGCACCAGGAAGGTTTGCACCACGACGATTTGCACCAGGAAGGTTTGCACCACGACGATTTGCAC s mm5.chr11 46236810 8 - 121648857 ----------------AGGATGGT-------------------------------------------------------------------------------------------------------------------------------- s rn3.chr10 47573991 8 - 110733352 ----------------AGCATGGT-------------------------------------------------------------------------------------------------------------------------------- s fr1.chrUn 305301643 120 - 349519338 CAGGAGGCTTTGGACCAGGAGGCTTCGGGCCAGGAGGCTTTGGACCAGGAGGTGTTGGTCCAGGAGGCTTTGGACCAGGA--------------------------------GGTGTTGGACCAGGAGGCTTTGGACCAGGAGGTGTTGGAC a score=11089.0 s hg17.chr17_random 169267 66 + 2618010 TTGCACCAGGAAGGTTTGCACCACGA--------------------------------CGATTTGCACCAGGAAGGTTTGCACCACGACGATTTGCAC s panTro1.chr19 82372999 98 - 82489036 TTGCACCAGGAAGGTTTGCACCACGATGATTTTTGCACCAGGAAGGTTTGCACCACGACGATTTGCACCAGGAAGGTTTGCACCACGACGATTTGCAC s rn3.chr14 102612419 66 - 112220682 CAGCACTAGGGTGGTCAGCATCAGGG--------------------------------TGGTCACCATCAGGGTGGTCAGCATCAGGCTGGTCAGCAC s fr1.chrUn 305301697 66 - 349519338 TTGGTCCAGGAGGCTTTGGACCAGGA--------------------------------GGTGTTGGACCAGGAGGCTTTGGACCAGGAGGTGTTGGAC a score=14330.0 s hg17.chr17_random 169267 66 + 2618010 TTGCACCAGGAAGGTTTGCACCACGA--------------------------------CGATTTGCACCAGGAAGGTTTGCACCACGACGATTTGCAC s panTro1.chr19 82372999 98 - 82489036 TTGCACCAGGAAGGTTTGCACCACGATGATTTTTGCACCAGGAAGGTTTGCACCACGACGATTTGCACCAGGAAGGTTTGCACCACGACGATTTGCAC s mm5.chr4 150562054 66 + 154141344 TCACACTGGGTTGGATCACACTGGGA--------------------------------TGGTTCACACTGGGATGGACCACACTGGGAGGGATCACAC s rn3.chr14 102612419 66 - 112220682 CAGCACTAGGGTGGTCAGCATCAGGG--------------------------------TGGTCACCATCAGGGTGGTCAGCATCAGGCTGGTCAGCAC s fr1.chrUn 305301697 66 - 349519338 TTGGTCCAGGAGGCTTTGGACCAGGA--------------------------------GGTGTTGGACCAGGAGGCTTTGGACCAGGAGGTGTTGGAC a score=5110.0 s hg17.chr17_random 169333 36 + 2618010 CAGGAAGTTTTGCAATGGGACGGTTTGCACCAGGAA s panTro1.chr19 82373097 36 - 82489036 CAGGAAGTTTTGCAATGGGACGGTTTGCACCAGGAA s mm5.chr11 46236818 14 - 121648857 ----------------------GTATGCACGGGAGA s rn3.chr10 47573999 14 - 110733352 ----------------------GTATGCACGGGGGA s canFam1.chr9 38048328 26 + 53642819 ----------CAGATGGAGATGGTTTGCACCAGGAC s fr1.chrUn 305301763 36 - 349519338 CAGGAGGCTTTGGACCAGGTGGGATTGGTCCTGGCA a score=4817.0 s hg17.chr17_random 169333 22 + 2618010 CAGGAAGTTTTGCAATGGGACG s panTro1.chr19 82373097 22 - 82489036 CAGGAAGTTTTGCAATGGGACG s mm5.chr4 150562120 22 + 154141344 TGGGTTGGTTCACACTGAGAGG s rn3.chr14 102612485 22 - 112220682 CAGGGTGGTCAGCATCAGGCTG s canFam1.chr9 38048328 12 + 53642819 ----------CAGATGGAGATG s fr1.chrUn 305301763 22 - 349519338 CAGGAGGCTTTGGACCAGGTGG a score=3690.0 s hg17.chr17_random 169333 22 + 2618010 CAGGAAGTTTTGCAATGGGACG s panTro1.chr19 82373097 22 - 82489036 CAGGAAGTTTTGCAATGGGACG s rn3.chr14 102612485 22 - 112220682 CAGGGTGGTCAGCATCAGGCTG s canFam1.chr9 38048328 12 + 53642819 CAG----------ATGGAGATG s fr1.chrUn 305301763 22 - 349519338 CAGGAGGCTTTGGACCAGGTGG a score=1943.0 s hg17.chr17_random 169369 2 + 2618010 GG s panTro1.chr19 82373133 2 - 82489036 GG s mm5.chr11 46236832 2 - 121648857 GA s rn3.chr10 47574013 2 - 110733352 GA s canFam1.chr9 38048354 2 + 53642819 GG s fr1.chrUn 310346569 2 + 349519338 GG a score=166060.0 s hg17.chr17_random 169371 526 + 2618010 CAGGGGCaacagaatcacaattccctgagtgccagttgcacactgggcactgtgctaagcactgtatacccatcctcacctttaactcacacaaggttgttcttattctcccccattgca--gatgagaccca-ngggcctaagttaaacaacttgcccaaagtccggcacgcttaggaggaggcacacctga-cttttgactctacgtctgcctactcc-ctgacctatgctctttctaGAAAGTGGACACTTGCCCAGNATAACACCACTTCTATCCACTTCTATCCCTCGGGGAGGCCCTACCCCATTTCAGCTGGGCTCAGAGCTGGGCAAATTCAGACCT-AGAGTGGATTTCAACTCTGCCACCTGCCAAAGGGTAGACCCCAACATGCCATGTGTTTCTCCAGTGGGCATCCTTGGGTTCNCCTGGCTCCATGCTTAGGAGGCTGGGCCCTCCACCTGACTTCTTCAAAGCCCTCCCCAAGAGCCAGCTCCTGCAGAGCCAAGAGCCGTGAGCCGATCCTCCAAA s panTro1.chr19 82373135 523 - 82489036 CAGGGGCaacagaatcacaattccctgagtgccagttgcacactgggcactgtgctaagcactgtatacccatcctcacttttaactcacacaaggttgttcttattctcccccattgca--gatgagaccca--gggcctaagttaaacaacttgcccaaagtccggcacgcttaggaggaggcacacctga-cttttgactctacgtctgcctactcc-ctgatctatgctctttctaGAAAGTGGACACTTGCCCAG-ATAACACCACTTCTATCCACTTCTATCCCTTGGGGAGGCCCTACCCCATTTCAGCTGGGCTCAGAGCTGGGCAAATTCAGGCCT-AGAGTGGATTTCAACTCTGCCACCTGCCAAAGGGTAGACCCCAACATGCCATGTGTTTCTCCAGTGGGCATCCTTGGGTTC-CCTGGCTCCATGCTTAGGAGGCTGGGCCCTCCACCTGACTTCTTCAAAGCCCTCCCCAAGAGCCAGCTCCTGCAGAGCCAAGAGCCGTGAGCCGATCCTCCAAA s mm5.chr11 46236834 437 - 121648857 CAGGGCAAGCA------------------TGCCGACTGCCTGCCAGGTAGTGTGCTAGGCATCTTCTATCCAGATTCC---------------------TTCTAAATCTC-------------------------GGACTGAAGCCAATCA-----CACAAAGTCAGGCACAGTCAAGGGCCGGAAGACCGGAGCTTTCGACTCCAAGTCTGTCTCAGTC-CTAACCCTTGGTCTTTCCAGAAAATGGACTTTTCTCTGG-ATGACAGTACTTCCG--CACC----TCCCTCTGTGGGGTCCCACCCCATGTCAGCAGGGTTCATGAGTGATCAAACTCCGACTC-AGAATGGGCCTTCATTCTGCCAGCTACCAGAGCCTGGTCC---ACATACCA----TCTCTTCAGCGGGTATCTTAGGGTTC-CCTGGCTC---------AAAGCTAAGACCTTTTCCCCACTTCTTCTAGATTTTTCCTAAGAGCTAGCTCCTACAGGGCGGAGAATTGTGAGCTGCTCTTCCAGA s rn3.chr10 47574015 427 - 110733352 CAGGGCAAGCG------------------TGC------CCTGCCAGGTAGTGCCCTAGGCATCTCCTATCCAGATTCC---------------------TTTCACACCTC-------------------------AGGCTGAAGTTAACCA-----TACAAAGTCAAGC-----CAAGGGTCGGAAGACTGGAGCTTTCAGCTCCAAGTCTGTCTCAGTC-TTAGCCTTTGGTCTTTCCAGAAAATGGACTTTTCTCTGG-ATGACAGCACTTCCACCTACC------TCTTTGTGGGGTCCTACCCCATGTCAGTAGCACTCACAAGTGCTCAAACTCAGACTG-AGGATGGGCCTGTATTCTGC------CCAGAGCCTGGCCC---ACACGCCA----TTTCTCCAGAGGGTATCTTAAGGCTC-CCTAGATCAATGCTTTGTAAGCTAGGACCTTT--TTACCCACTTCTAGATTTTTCCTAAGAGCTAGCTCCTACAGGTCCAAGAACTGTGAGCTGCTCTTCCACA s canFam1.chr9 38048356 482 + 53642819 CAGGGGCaagagaattaccagtgactgagtgccggttgcacaccag------------gcactttctatccgtcctcatcagcatctctcagaaaactgtccgtggcctcccccattccaccagtgggactgactgggcctaagttcagcaacttgcccaaagtcagaca----caggagctgggagacactggcttttggatccaaatttgcctgattctccagcccatactctttctaGAAGATGGATACCTGCCCAG-ATAGCACCAATTCTAC---------------------------CCCCACCTCACTGGGGCTCATAGCTGGAGGAACTCAGACCTCAGAGTGGCTCTCCACTCTGCCACCTGCCAGAGGTTGACCCTACATATGCCACCTCTTTTTCCAAGGAACATCTCAGGATTC-CCTGACTCAGTGCTTTGGAGGCTGGGCCCTC---CCCACTTCTTCCAGACCCT--CTGAGAGCCAGCACCTGCAGAGTCAAAAGCTGTGAGTAGATGCTCCAAA a score=1092.0 s hg17.chr17_random 169897 2 + 2618010 AA s panTro1.chr19 82373658 2 - 82489036 AA s mm5.chr11 46237271 2 - 121648857 AA s canFam1.chr9 38048838 2 + 53642819 AA a score=6622.0 s hg17.chr17_random 169899 38 + 2618010 CCAGACCCATAGGA----CAAGAGGCCAGGAGGGAGCGGCCA s panTro1.chr19 82373660 38 - 82489036 CCAGACCCACAGGA----CAAGAGGCCAGGAGGGAGCGGCCA s canFam1.chr9 38048841 41 + 53642819 CCAGACCCACAGAAGGTCAAAGAGGGCA-GAGGAAGAGGTCA a score=2712.0 s hg17.chr17_random 169937 18 + 2618010 ----------------GCTCTCGGTGAACACAGG s panTro1.chr19 82373698 18 - 82489036 ----------------GCTCTCGGTGAACACAGG s rn3.chr10 47574476 18 - 110733352 ----------------TCTCCCCATGAGCCCATG s canFam1.chr9 38048882 34 + 53642819 GCCCCCTCCTGTCCCCATCCGCAGTGAATACAGA a score=-207.0 s hg17.chr17_random 169955 13 + 2618010 TACAGGGCCTTGG------------- s panTro1.chr19 82373716 13 - 82489036 TACAGGGCCTTGG------------- s rn3.chr10 47574494 26 - 110733352 AGTCAGACTTTGATTTAAAAAGAACA a score=72682.0 s hg17.chr17_random 169968 197 + 2618010 CAGGCTCAGCGGTCAGGACGTCCAGG-Tctcatctccagtctgcctcttgctagtcacttgacctcccgcagcctcagtttccccatctgtaagatgatgacgacaccctccagctc---cttagtaaagga-aTGATAAAATGACAGTTCAGCGTCTG--TATTTTAATACCTGCGTCATTATGTAATCATTTTGTGATGCAG s panTro1.chr19 82373729 197 - 82489036 CAGGCTCAGCGGTCAGGACGTCCAGG-TctcatctccagtctgcctcttgctagtcacttgacctcccgcagcctcagtttccccatctgtaagatgatgaCGACACCCTCCAGCTC---CTTAGTAAAGGA-ATGATAAAATGACAGTTCAGCGTCTG--TATTTTAATACCTGCGTCATTATGTAATCATTTTGTGATGCAG s mm5.chr11 46237349 191 - 121648857 CAGGGTCAGGAGTTGGTATAACCAGGCTCCTATATCCAGTC--CCAGTTGCCAGACACTTGATCACTTGAAGCTTCAGTGTCCCTATTTGCAAGATGGT-ACCACCTCTTCTTGTCCCCACCCACCCAAGGACATGTGGAGAC----------TGTCTGCTTTTTTTGATACCCATGTCACAGCATAATCATTTTATGATGTAG s rn3.chr10 47574520 178 - 110733352 CAGGGTCAGGAATTGGTATAACCAGGCTCCTGTATCCAGTC--CCAGTTGCTAGACACTTGA--------AGCCTCAGTTTTCCTATTTGCAAGATGGT-ACCACCTCTTCTTTTTC---CCC--CAAAGGACATGTGGAGAC----------TGTCTGCTGTTTTTGATACCCATGTCACAGCATAATACTTTAATGATGCAG s canFam1.chr9 38049158 179 + 53642819 CAGGGTCAGGGGTCACGATATCCAC--TCTCATTCCCagtc---------------acctgacttcctgaagcctccttttccccaactgtaaaatggtaacagcactctctttctc-----AAGTGAAGAA-ATTACGAAATGATGGTTCAGTGTCTG--TATTTTAATACCTGTATCATTACATAATCACTTTGTGAAGCAG a score=29141.0 s hg17.chr17_random 170165 140 + 2618010 CCACCTCTGGCACAGAAAAAGTCAC--------------------------CCTGTGCCTATTTAAGGATTAATCCCCTTAAGCATTCCTGGAAATGAGAACCCCTCTNNGTGNCNCAGGCTGCCCTTCCAGGCTCTTCTGTCCTTTCCTTGGCCTTTGGCTCTT-G s panTro1.chr19 82373926 136 - 82489036 CCACCTCTGGCACAGAAAAAGTCAC--------------------------TCTGTGCCTATTTAAGGATTAATCCCCTTAAGCATTCCTGGAAATGAGAACCCCTCTGTG----CCAGGCTGCCCTTCCAGGCTCTTCTGTCCTTTCCTTGGCCTTTGGCTCTT-G s mm5.chr11 46237540 147 - 121648857 ACACGTCTGACATAGGAAAAGTCACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTAAGGTCTAAGCCCCTTCGGTCCTCCTACAA---CGACAGCCTCTGAG----------------ACCAGGTTCTTATCT-CTCTCCTTAGACTCAGACCCTCAA s canFam1.chr9 38049337 123 + 53642819 CCACCTGTGGCACAG---AAGTCAC--------------------------TCTATGCCTATTTAAGGACGAATCCCCTTAAGCATGCCCAGAAACTGGAAACCCACTAGG--------------CTTCCAGGCTCTCTAGTCCTTCCCTTGGCCTTAGACTCCT-G a score=104331.0 s hg17.chr17_random 170305 284 + 2618010 GAAGGCTGAAT-ATTTCTCCCACCAGGACCTCAGACTATCTTTAGGGAAC--CCCGGCTGGTTCATTCCCACTGTAACCCCTGAGGCTCTTGGcctcctcctgtcctcctcttcctcctcctttttttccctccttcccctcctcctcAGTTTGGGCTTCCCCTGTCCAAGAAGCCTCAGGATGAGCT---TTGGGAACGAGGTTTTACCTGTGTTTCCAACTCTGCTCTGAGCC-CCTGAGCTCTGTAGTGGAGGGGAGGAaagggagaagggagggaaagtggaagcat s panTro1.chr19 82374062 284 - 82489036 GAAGGCTGAAT-ATTTCTCCCACCAGGACCTCAGACTATCTTTAGGGAAC--CCCGGCCGGTTCATTCCCACTGTAACCCCTGAGGCTCTTGGcctcctcccgtcctcctcttcctcctccttgttttccctccttcccctcctcctcAGTTTGGGCTTCCCCTGTCCAAGAAGCCTCAGGATGAGCT---TTGGGAACGAGGTTTTACCTGTGTTTCCAACTCTGCTCTGAGCC-CCTGAGCTCTGTAGTGGAGGGGAAGAAAGGGAGAAGGGAGGGAAagtggaagcat s mm5.chr11 46237687 233 - 121648857 GAAGGCTGAGTGGGCTCCCCCAGCAG----CCAGACTA--------------CCAGGCCAGCTTATTCTC-CTGTAATCCCTGAA--TCTTGGCC------------------CCTCAAC--------CCCTACCCCCACTCCATCT-------GGCTGTCCCCATCCAAGAAGCCTCATGGGGATCC---TTGAGAACAGGGCTTCACCTGGGCAGCCAGCTCCACTCTGAGTCGCTTCAGTTCTGCAGGGTGAGGAAGGAAAGGCAG-GGGAAGGGAGAATGGAAACAT s rn3.chr10 47576122 236 - 110733352 GAAGGCTGAGT-GGGCTCCCCAGCAC----CCAGACTG--------------CCAGGCCAGCTCATTCCC-CTGTAATCCCTGAA--GTTTGGCC------------------CCTCAAC--------CCCCACCCCCACTCCATCT-------GGCTGACCCCATCCAAGAAGCCTCATGGGGATCCCAGCGGAGAACAAGGCTTTACCTGTGCAACCAGCTCCACTCTGAGTCTCTTCAGCTCTGCAGGGGTGAAGAAGGAGAGGCAAGAGAAGGGGGAATGGAAACAT s canFam1.chr9 38049460 286 + 53642819 GAAGGCTGAAT-TCTTCTCCTAGCAGGACCCCAAATAGTCTTTGGGGAGCTGCCAGCCCCGCTCTTTCCCAGTGTAAGCCCTGAGGCTACCGGCCCTTCCCTCTACCCCGCCTCTTCCTCCTTAATTCTTCCCCTCCCTTTCCACCTTAATTTGGGCTGTCTCCACCCCAGAAG-CTCAGGAGTAGCTC--TGGGGAACAGCATTTTACCTGCGTTTCCAGCTCTGCTTTGACCC-CTCAAGCTTTGAAGGGGTGAGAAGGAAGAGgcagaggaaggggacgtggaagctt a score=525.0 s hg17.chr17_random 170589 2 + 2618010 cg s panTro1.chr19 82374346 2 - 82489036 cg s mm5.chr11 46237920 2 - 121648857 GG s canFam1.chr9 38049746 2 + 53642819 cg a score=2890.0 s hg17.chr17_random 170591 12 + 2618010 --aacagtcaggac s panTro1.chr19 82374348 12 - 82489036 --aacagtcaggac s canFam1.chr9 38049748 14 + 53642819 aaaaaagtcaggac a score=497.0 s hg17.chr17_random 170603 11 + 2618010 -actgggctctc- s panTro1.chr19 82374360 11 - 82489036 -actgggctctc- s rn3.chr10 47576616 11 - 110733352 -GTTAGGTCTTA- s canFam1.chr9 38049762 13 + 53642819 acctaggtttcta a score=44781.0 s hg17.chr17_random 170614 139 + 2618010 atcgcagctctgccgccagc--cagcagtcaccctggacacatccttgtgcctgagcgctaatttcctcccctgtgaaatgggaacagcaggccctgcctacatcgtggggtggtttaaggaatcaat-gagatgacagctg s panTro1.chr19 82374371 139 - 82489036 atcgcagctctgctgccagc--cagcagtcaccctggacacatccttgtgcctgagcactaatttcctcccctgtgaaatgggaacagcaggccctgcctacatagtggggtggtttaaggaatcaat-gagatgacagctg s mm5.chr11 46238084 137 - 121648857 ATTGCAGTTCT--CAGCAAC--CAACAATCACCCTGATTTGTTCTCTGTGCCTGGGCCTCAATTTCCTGAGCTGTGAAATGGGAACAAGAATCTCTGGCTCTACGAT-GGGCAGTAAAAGAATGCAAGAAAGATGGCAGAGG s rn3.chr10 47576627 125 - 110733352 ATTGCAGTTCT--CAGCAAC--CACCAGTCCCCCTGATCTGATCTCTGTGCCTGGGCCTCAATTTCCTGA---GTGAAATGGGA-------CCTCCGGCTCCACGCT-GGACAGTAAAAG-AATGGGC-GAAATGATGGCTG s canFam1.chr9 38049775 138 + 53642819 atcccagctctgctgcaaacagtggtggtcactgtgggtaagtcagtgtgcctgagctttaatttcctca-cgggaacatgggaacagta-tccttgtctacgtcat-ggctaatgtaaggaatcact-gcgctgactgctg a score=1504.0 s hg17.chr17_random 170753 6 + 2618010 tgaaTG s panTro1.chr19 82374510 6 - 82489036 tgaatg s mm5.chr11 46238221 6 - 121648857 AGGACA s canFam1.chr9 38049913 6 + 53642819 tgaacg a score=0.0 s hg17.chr17_random 170759 7 + 2618010 TTNCTNT a score=273.0 s hg17.chr17_random 170759 1 + 2618010 T s panTro1.chr19 82374516 1 - 82489036 t s mm5.chr11 46238227 1 - 121648857 T a score=-478.0 s hg17.chr17_random 170760 6 + 2618010 TNCTNT s panTro1.chr19 82374517 4 - 82489036 tc--tt a score=10186.0 s hg17.chr17_random 170766 89 + 2618010 GGCGCAGTACAACATATGCCATGTGTTTCTCCAGTGTTTTCAAAGGCCGGTAGTGCCCGCCACCACCCAGTT----CAGAACTCACCACAAAA s panTro1.chr19 82374521 89 - 82489036 ggcgcagtacAACATACGCCATGTGTTTCTCCAGTGTTTTCAAAGGCCGGTAGTGCCCGCCACCACCCAGTT----CAGAACTCACCACAAAA s canFam1.chr9 38049919 57 + 53642819 gtctaggtacagtatac------------------------------------cgactgtcaccgctcagtCAGCACAGAACTTACCACAAAA a score=91.0 s hg17.chr17_random 170854 1 + 2618010 A s rn3.chr10 47577215 1 - 110733352 A a score=85767.0 s hg17.chr17_random 170855 301 + 2618010 ---CATG-AATTTCTCATCACTTCTCA---CCACGAGTCTTGTCTTTCCAAAGGAAGGGAGAA----GGGAAAGCCAGct-----gagcacctcttacctgtc-----------------tgtgctggatggggccttgccacaaggctgtgcagttggaaatagcctcacttcatagatgaggaaaccgaggctcaaagaggtcaaatagcctgccagaactgtgcagctggaagccacaggccaaggctttgCCTCTCTTTCCTCTGCTCC--CCATCACTCTGCAGGGGTTATGGTGGGGGAACAAGAGA----------GGCTTGGAGCCCCTCATTCAG-------AT s panTro1.chr19 82374610 301 - 82489036 ---CATG-AATTTCTCATCACTTCTCA---CCACGAGTCTTGTCTTTCCAAAGGAAGGGAGAA----GGGAAAGCCAGCT-----GAGCACCTCTTACCTGTC-----------------TGTGCTGGACGGGGccttgccacaatgctgtgcagttggaaatagcctcacttcatagatgaggaaaccgaggctcaaagaggtcaaatagcctgccagaactgtgcagctggaagccacagggcaaggctttgCCTCTCTTTCCTCTGCTCC--CCATCACTCTGCAGGGGTTATGGTGGGGGAACAAGAGA----------GGCTTGGAGCCCCTGATTCAG-------AT s mm5.chr11 46238619 309 - 121648857 ---CACA-CAATTCTCCATTCTTCTCA-----GTGAGTCTAGTCTCT-AACAGGAAGGAGGAATCATGAGGAAGTCATGT-----CATCTTGTCATACTCAAG-----------------GCTCATGGA--GGGCCTCCCCACACTGCTGGGAAATCAGAATTAGTCCCATTTGACAGATGAGAAAACTGAGACACAGGGGCTCCAATGACCCCACCTGAATGATGCAACTGAGAGCAACAGGG-AAGGC----CCTCTCCTCTCCTAGCTCCAGCCCTCACCTTGCATCAGTCATCAT-----CCCAGGAGATCCCTGTCCTGGCCTGCTTCCCTCTGTTCATCCTGACCAT s rn3.chr10 47577216 303 - 110733352 ---CAT--AATTCTCCATTTTTTTTTAAACCAGTGAATCTAGTCTCT-TACAGGAAGAAAGAA----AACAAATCCAGTTTTGTGAAGTCCCTCATGCCTGTCATCTTGTCATTGTCAAGGCTAATGTA--GGGCCTCACCACACTGCTGGGAAATCAGAATTAGTCCCATTTCACAGATGAGAAGACTGAGACTCAGGGGCTCAAATGACCCCACCTGAATGATGCAACTAAGAGCGATAGGG-AAGGC----CCTCTCCTCTCCTAGCTCCAGTACTCACCTTGCA-----TAT--------AGCTAGTGG-------------TTGACACTCTCATATTAG-------AC s canFam1.chr9 38049976 307 + 53642819 CAGCATATGGTTTTCCATCATTTCTTA--CCAGTGAGTCTTGTCTCCCCAGAGGA--GAGAAA----GAGAAAGCCAACCCTACTGGGCACCTCTGATCTGTCATGTTC-----------TGTGCTAGATGGGGcctcaccacaatgctgttaggttggaattagccccatttcacagatgagaaaac--aggttcaaagagatcaaatgatctgtcagaatgtagcagctggaagtgATGAGA-AAGGG------TCTCTTCTCTCTCCTCT--CCACCCCTTTCAAGGGGTTATGGTGG---AGGAAGGGA------CACTGGCTTGGGGCCCCTCATTTAC-------AC a score=901.0 s hg17.chr17_random 171156 7 + 2618010 GCACCAA s panTro1.chr19 82374911 7 - 82489036 GCACCAA s mm5.chr11 46238928 7 - 121648857 GCCCCAG s rn3.chr10 47577748 7 - 110733352 ACAATAG s canFam1.chr9 38050283 7 + 53642819 TCATGGA a score=3107.0 s hg17.chr17_random 171163 13 + 2618010 AGGCACCCGCTAA s panTro1.chr19 82374918 13 - 82489036 AGGCACCCGCTAA s mm5.chr11 46239206 13 - 121648857 GGACACAGCCAAA s rn3.chr10 47577757 13 - 110733352 GGACACAGCTAAA s canFam1.chr9 38050290 13 + 53642819 AGGGACCCAGCAA a score=140885.0 s hg17.chr17_random 171176 658 + 2618010 GAAGCTAAG--TGTCTTACACA---TCAGTGGAAACCAGAGGGTAAACAGGATTCCATCCAT----GCCCAGGGCTTTCCGGGAACACACCTGTCCAAGCAGCAGCA-GTTCCCAACAGAGCTCTGGTCCCGGANAAGNCCNGGACAGCCAGGGNCTGGGCCCTCTGGGATTTGTTTAGTGATCTGACC-GTGTGGGAGGCCTAGAGTAGGAGTGGGGGTGGGGGGAGCGTGCCGCCCAGCCTTATTGCATCACTCACCGCCC----------------AGG-----CCCTGCCCTCACCCGC-------------TCCTGACCAGGCCCT---GTGCAGGTTCTCAGCCACCCTGCCCC------GGGGGGTCCTTCAGACTCTACTCACTGACCAAGTGAGGGACTGACCCGAGGTTAGAG----TGC-TGTGTTGTATGTGACCTGAGAATATGTGTGCACAGACTGAGCCC-CGGTGTCCTTGTGCAGTTGAGCGTGTACATGTCCTGCCCGTGTGTAGGCAACCTGTCCCT-ACATGCTAGGAGTGTGACTCCACGTCCTG-CT---------------AGAGGGGGAGGAGAGAAGGAGTTGTGCCCAGGGTCCCCTGATCACTTCTATGGGCTCATGTTTGTGCATCTTGTTAGGGGTGCTTGGGGGTAGGGAAGCCTGTGCCCTGGGTGCCCTTGATCACCTGTGTGTGTGCTCCATTAGGTG---TGCG s panTro1.chr19 82374931 654 - 82489036 GAAGCTAAG--TGTCTTACACG---TCAGTGGAAACCAGAGGGTAAACAGGATTCCATCCAT----GCCCAGGGCTTTCCGGGAACACACCTGTCCAAGCAGCAGCA-GTTCCCAACAGAGCTCTGGTCCCGGA-AAGCC--GGACAGCCAGGG-CTGGGCCCTCTGGGATTTGTTTAGTGATCTGACC-GTGTGGGAGGCCTAGAGTAGGAGTGGGGGTGGGGGGAGGGTGCCGCCCAGCCTTATTGCGTCACTCACCGCCC----------------AGG-----CCCTGCCCTCACCCCC-------------TCCTGACCAGGCCCT---GTGCAGGTTCTCAGCCACCCTGCCCC------GGGGGGTCCTTCAGACTCTACTCACTGACCAAGTGAGGGACTGAGCCGAGGTTAGAG----TGC-TGTGTTGTATGTGACCTGGGAATATGTGTGCACAGACTGAGCCC-CGGTGTCCTTGTGCGGTTGAGCGTGTACATGTCCTGCCCGTGTGTAGGCAGCCTGTCCCT-ACACGCTAGGAGTGTGACTCCACGTCCTG-CT---------------AGAGGGGGAGGAGAGAAGGAGTTGTGCCCAGGGTCCCCTGATCACTTCTATGGGCTCATGTTTGTGCATCTTGTTAGGGGTGCTTGGGGGTATGGAAGCCTGTGCCCTGGGTGCCCTTGATCACCTGTGTGTGTGCTCCATTAGGTG---TGCG s mm5.chr11 46239219 635 - 121648857 AATGATAAGCCTCTCCCACGCG---TCAGTGAAAACCAGA--GTAAACAGGGTTCCATCCTCGCCGGCCCAGGGCTTACTGGAGATGCATCTGCACACGCAGCAGCCTGCTCCCAGCACAG--CTGTTCCCTGA-------------ACTGCGG----------CAGGGATTTGCCTG------------GCATGGGAGGC-----ACAAGTGTGGGCCAGGCAGCACCTTGCCTTTACACCTGAAC---TCAGTCATCACCC----------------CAGGAGATCCCTGGCCTGGCCTGCTTCCCTCTGTCCATCCTGACCATGCCCC--GGTCCAAGTTCTCACCCAGCCTGTTCT------TCTGGGTCTTTTAAG--CCACTCAGGGACTGAGTGAGGAGTCTGGCCCAGGTCATAGACGCTCC-TGT-TTACATGTGACCTGAGAGGAAGTAAG--CAGACTGTCCCAGCAGTGTCCTGGGACAGCCCAGGGTACACTTGTCCTGCTAGGAAGTAAACAGCCTGTTCC-------CTGGCAGGGTAATCCTGTGGCCTA-CCTACCTGCCTCTACAAAGGAGGGGATTTTTTGAGGAGTTCCTATCCACATCCCCAAATGGCTTCTATGG-----CTATTATGGGTTCTGTGAGTTGAGCCC---AGCACGGAAGAC--TGCCCTGGGCATCCTTGCGAACATGTGT-----CTCTTGTATGTATTTTGCA s rn3.chr10 47577770 638 - 110733352 ACTGATAAGCCTCTCCCACACAGACTCAGTGAAAACCGGA--GTAAACAGGATTCCATCCACACCAGGCCAGGGCTTA-TGGAGCCGCACCTGCACAAGCAGCAGCCTGTTCCCAGCACAG--CTGTTCCCAGA-------------GAGGCAG----------CAGGGATTTGCTTAGTTGCCTGGCCACCACAGGAGGC-----ACAAGTGTGGGCCAGGCAGCACCTAGCCTTTACACCCAAAC---TCAACCATCACCC------CAGGAGATCTCTT-----CCCTGGCCTGCTTCCC-----TCTGTCCATCCTGACCATGCCCT--GGTCCAAGTCCTCACCCAGTCTGTCCT------TTTGGGTCTTTCAAG--TCACTCAGGGACTGAGTGAGGAGCCTGGCCTAGG----------TCC-TGT-TTGCATGTGACCTGACAGAAAGTGAG--CAAACTGTCCCAGCAGTGTCCTGGGACAGCCCAGGGTACACTTGTCCTGCTAGGATGTAAACAGCCTGTACCTGACTTCCTGAGGAGGTAATCCTGTGGCTTGCCC-ACCTGCATCTACAAAGGAGGGGGTTTTTGAGGAGTTCATATCCTCATTCCCCAGATGACTTCTACGG--------CTATGGGTTCTGTTGG----GCCC---AGCACGGAAGACTGTGCCCTGGGCATTCTTGAGAACCTGTGT-----TTCTTGTGTGTA---TGCA s canFam1.chr9 38050522 522 + 53642819 GAAGATAAGCGTTTCTAATATG---TCACTAGAAACTGGGGAGTAAACAGGATCCTGTCCCG----GCCCAGGGCTTCCCGGAGACACACCTGTATAAGCCGCGGCC-ATTCCCCACAGAG--CCGCCCCCGGA-AAGCA------------------------CTGGGCCCGGCTT-----TCTTACC-AGGTGGGGAGC-----CTGAGCCTGCGGGCGGCAGCGCCCTGCCTCCCCACTTCCAC--CTCATCCATCGCTCACTGGGAAGGTGCCTTCTG-----CCCAGGCCCCGTCCCCGCCGTCCCCTC--TCCTGACCACAGCTGGCGGTCAAGGTTCTCACCTACCCCGTCCCCACCAGGAGAGGT------GG--CGGCTCCCTAACCAGCTGAGGGACTGACTCGGGGCTACGGAGGGTGTGTGC-TTGTACGCGACCTGGGAGGAAGTGTGAACAGACTGC-----CCATGACCTTGGACCAGCGAGGATGTACCTGTCC-GCACGC--------------TCCCG---------------------TGTGTCCTG-CT---------------GGGCGG------------------CGCTCCGAGTCCCCC-ATCACGCCCACGA-------------------------------------------------------------------------GCGCGTGTGTCCCGTTAGGCG---GGCG a score=20250.0 s hg17.chr17_random 171834 412 + 2618010 CGCCTGTGCATTGGGGGTGTACTGTGTCACAGCTTCCTAAACCAACCATGTGCGCATGCAGA---------------------------------------CGTTTGCGTGTGTGACCTACGGTGT-GAGCGAGCGGATGCTTCCAC-CACGTGTCTCTGCA---------CACGCATGTGTG-CACTTG----------CACACCTGCGTGTGTCC---CGAGAGAGCGAGCGGAG-CCCAGCGTGGGCTGGCACGCGCGGGAACGTGTGGGTGCGCGTCCTGCGGGTCCCTGC--CGGGTTGACTCCCAGCTTGTGCCGCGGGCGTGCATGAGCGGAAGGCGC-----CCGGCGGCCCTGCCTGG---CCGCGAGTG---TGCGCGCGCGGGGTCCCGGGCCGGCGTGCACGCCGGTGTGAGTGCGAGTGCGAGTGAGTG----------TGGCNCCGCGCG----GCTCCCTC---CGCTCCGCG-------------------------CCGCCCGCGCAGCCCGCAC s panTro1.chr19 82375585 412 - 82489036 CGCCTGTGCATTGGGGGTGTACTGTGTCACAGCTTCCTAAACCAACCGTGTGCGCATGCAGA---------------------------------------CGTTTGCGTGTGTGACCTACGGTGT-GAGCGAGCGGATGCTTCCAC-CACGTGTCTCTGCA---------CACGCATGTGTG-CACTTG----------CACACCTGCGTGTGTCC---CGAGAGAGCGAGCGGAG-CCCAGCGTGGGCTGGCACGCGCGGGAACGTGTGGGTGCGCGTCCTGCGGGTCCCTGC--CCGGCTGACTCCCAGCTTGTGCCGCGGGCGTGCATGAGCGGAAGGCGC-----CCGGCGGCCCTGCCTGG---CCGCGAGTG---TGCGCGCGCGGGGTCCCGGGCCGGCGTGCACACCAATGTGAGTGCGAGTGCGAGTGAGTG----------TGGCGCCGCGCG----GCTCCCTC---CGCTCCGCG-------------------------CCGCCCGCGCAGCCCGCAC s mm5.chr11 46239854 324 - 121648857 TGCTGG------GGAGGTGCACCATGCCTTAGCATCC---ACCA-------GTGCA-------------------------------------------------TGTGTCTGTAGCCTGGAGCCCGGAATGGGTGATCTTTTCCAC-TGAGTGTCTCTACA---------CACATTTGTGTG---------------------TCTGTGTGTGTCTGCACGAGAGTG-GAATGCAG-CCCCTCATGGGCTGGCA----------------------------------------------------CCCAGT-----CTGCGAGCCTAAGTGAGGCAAAGGCTC-----CGAGTGGCCCTGCGCGTCTCCCGCGTGTG---TGAGCGCGC-------------------------------CGTGTGAGCGCGAGGAAGTGGTTGCTCTCCTGGC-TCGCTC-----GCTCCCTCGCTCTCTCCGTGCCCGCCAGC--------CCGCCCGCCCGCGCGCGCAGCCCGCAC s rn3.chr10 47578408 440 - 110733352 CATCCTGG----GGAGGCTCACCGTGCCACAGAATCTGTCACCA-CTGCATGTGTCTGTAGCCTGTAGCCCGGAATGGGTGATCTTTTTCACTGAGTGTCTCGTGTGTGTGTGTGTGTGTGTGTGT-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG---------TGTGTGTGTGTG-TGTTTGCAATGCCCCACACACCTGCGCCTGTCC---CGCGAGAGTGAATGCAGCCCCCTCATGGGCTGGCACATGCGGAA---------TGAGTAGCTCGCTGGGG-----------------CCAAGT-----CTGCGACCCTAAGTCAG-GGAAGGCTC-----GGAGTGGCCCTGCGCGCCTCCCGTGTGTG---TGAGCGCGC-------------------------------CCTGTGAGCGCGAGGAAGTGGTTGCTCTCCTGGC-TCGCTCGCTC-GCTCCCTCACTCTCTCCGTGCCCGCCAGCCCGCCCGCCCGCCCGCCCGCGCGCGCAGCCCGCAC s canFam1.chr9 38051044 352 + 53642819 TGTCCT------GGGAGCGTGGTGTACTACAGCCACCCCAACCAACTCTGCAAGGGTCCATC---------------------------------------GGTCTGCGTGTGCGTCCTGCGAGGT-GAGC-----------------CAAGTG--TCTGCA---------CAGGCTTCTCTG---CTTGGAGTGACTC-GGCACCCCCGCGTGTCC---TGTGCGAGCGAACAGAA-CCCAGCGAGGGCTGGCACGGGCGGGAACGCGGCG--GCGCGTCCTGCGGCTCCCTGC--CCAGCCT---CCCAGCGGGC-CCGCCGCTGTGCGCGCGTGGAAggcgc-----cggg-----------gc---ccgcggggg---tgcgcgcgccggg------------------------------gccAGCGCGAAAAAGTG----------CGGCGCCGCCCGCTCGGCTCGCTC---CGCTCCCTT-------------------------ACGGACGCGCAGCCGGCTC s galGal2.chr19 6599576 402 + 9463882 CGCTTCTCCCTCTGCCCTGCTCTGTGCCACGTGTTGC---TCCATCCCCTGGTGCAGGCATT--------------------------------------------------GCTGCAGGGGGCAC-AGGTAGGGCTGAGCGCTCAG-CACGTGGCACAGCACCTCCCGGGCACGGCCGTGGGGCAC-------------GGCGACAACGCG-GTCC---CCCGCAGCCGGGTCAGC-TCCATCCCCAGCCCACAGCTGTGGGGACGCAGCACGGCGGGGAC-GCGGCTCCTTGTGATGCGCCGCGACCTTCCTTCTCTCGAGGGGCTCGGGGGACAGAGAGCGCTGCAACCGGGAGCCGGGGGAGT---CGGTGAGGGCTCTGAGCCCCCCGGGGCCGTGC--------------------AGGAGAAGGGGCAGTGACCGGATGGCCA--CGCCGGCGTCCG----GGTCCGGC---CGCAGCCCT------------------------CATTCCTCCGCTGCCGGTGC a score=0.0 s hg17.chr17_random 172246 8 + 2618010 ACTCACCC a score=5242.0 s hg17.chr17_random 172246 6 + 2618010 ACTCAC s panTro1.chr19 82375997 6 - 82489036 ACTCAC s mm5.chr11 46240178 6 - 121648857 ACTCAC s rn3.chr10 47578848 6 - 110733352 ACTCAC s canFam1.chr9 38051396 6 + 53642819 GCTCAC a score=-1020.0 s hg17.chr17_random 172252 2 + 2618010 CC s panTro1.chr19 82376003 2 - 82489036 CC s mm5.chr11 46240184 1 - 121648857 C- s rn3.chr10 47578854 1 - 110733352 C- a score=29943.0 s hg17.chr17_random 172254 42 + 2618010 TGCTTGGTTGCTGCCGGGTGACG-CGGGCTGGGCCCGCCCCCT s panTro1.chr19 82376005 42 - 82489036 TGCTTGGTTGCTGCCGGGTGACG-CGGGCTGGGCCCGCCCCCC s mm5.chr11 46240185 41 - 121648857 -GCTTGGTTGCTGCCGGGTGACG-CGGGCTGGGCCCGCCCCCT s rn3.chr10 47578855 41 - 110733352 -GCTTGGTTGCTGCCGGGTGACG-CGGGCTGGGCCCGCCCCCT s galGal2.chr19 6599978 43 + 9463882 CGCTTTGTTGCTAGCTGGTGACATCACCCAGAGCCCACCCCCT a score=63835.0 s hg17.chr17_random 172296 102 + 2618010 GCCTGCCGGCCTCTG-----------GCACTCGCTCGCG-------CCGTC-----------------CGCAGCGGAGCGGGCAGCGGCCAAGTCAGGGC--CGTCCGGGGGCGCGG---------------------CCGGNGATGCCCGCAGCCCCCg s panTro1.chr19 82376047 102 - 82489036 GCCTGCCGGCCTCTG-----------GCACTCGCTCGCG-------CCGTC-----------------CGCAGCGGAGCGGGCAGCAGCCAAGGCAGGGC--CGTCCGGGGGCGCGG---------------------CCGGCGATGCCCGCAGCCCCCg s mm5.chr11 46240226 99 - 121648857 G-CTGCCGGCCCC-------------GCACTCACTCGCA-------CCGGC-----------------CGCCGCCGAGCAGGCAGCAGCCGCGTCAGGGC--CGTCCGGGGGCCACG---------------------CTGGCGATGACCGCAGCCCCCG s rn3.chr10 47578896 99 - 110733352 G-CTGCCGGCCCC-------------GCACTCACTTGCA-------CCGGC-----------------CGCCGCCGAGCAGGCAGCAGCCGCGTCAGGGC--CGTCCGGGGGCCACA---------------------CCGGCGATGCCCGCAGCCCCCG s canFam1.chr9 38051466 100 + 53642819 GCCTGCGAGCCCCCG-----------GCGCT--ATCCAG-------CCGGC-----------------CGCGGCTGAGCAGTCAGCAGCCGGGTCAGGGC--CGTCCGGGGgcgccg---------------------ccggcggtgcccgcagccctcg s galGal2.chr19 6600021 160 + 9463882 GCCTCCCAGCCGTCGCTCCGTCTCGCTCACTCCTTCGCAGGCAGAGCCGGCGGGATCGGGGCTGTGCGAGCGCCGGGGCGAGCGGCAGCAGCATGCGTGCGGCGGCCGAGGCTGAGGGCACGAGAAGCACGTAGGAGCCCGGCGGAGCCCGTGCCCACCG a score=44895.0 s hg17.chr17_random 172398 77 + 2618010 ccgcgccccgccgggcctgctgagccgcccccgggccggggtcgcgccgggccgggccgcgcccggggcggggcggC s panTro1.chr19 82376149 77 - 82489036 ccgcgccccgccgggcctgctgagccgcccccgggccggggtcgcgccgggccggcccgcgcccggggcggggcggC s mm5.chr11 46240325 75 - 121648857 CAGCGCCCCGCGGGACCCGCTGACTTGCCCCCGGGCCGGGGTCACACCGGGCCGGGCCGGGCC--GCGCGCCGCGGC s rn3.chr10 47578995 75 - 110733352 CAGCGCCCCGCGGGACCCGCTGACTTACCCCCGGGCCGGGGTCATACCGGGCCGGGCCGGGCC--GCGAGCGGCGGC s canFam1.chr9 38051566 75 + 53642819 ccgcgccccgccgggcctgccga-ccgcctccccgccgtccccgggccgggcagggccgcgccc-gggcggggccgc a score=-125.0 s hg17.chr17_random 172474 1 + 2618010 C s fr1.chrUn 283105877 1 + 349519338 G a score=-125.0 s hg17.chr17_random 172474 1 + 2618010 C s danRer1.chr5 16513913 1 + 40038624 G a score=238131.0 s hg17.chr17_random 172475 128 + 2618010 GCTGCCTGCATGACCCTCCGGCGGCGCGGGGAGAAGGCGACCATCAGCATCCAGGAGCATATNNCCATCGACNTGTGCCCCGGCCCCATCCGTCCCATCAAGCAGATCTCCGACTACTTCCCCCGCTT s panTro1.chr19 82376226 128 - 82489036 GCTGCCTGCATGACCCTCCGGCGGCGCGGGGAGAAGGCGACCATCAGCATCCAGGAGCATATGGCCATCGACGTGTGCCCCGGCCCCATCCGTCCCATCAAGCAGATCTCCGACTACTTCCCCCGCTT s mm5.chr11 46240400 128 - 121648857 GCTGCCTGCATGACCCTCCGGCGGCGCGGGGAGAAGGCGACCATCAGCATCCAGGAGCATATGGCCATCGACGTGTGTCCCGGCCCCATTCGGCCTATCAAGCAGATCTCCGATTATTTTCCCCGCTT s rn3.chr10 47579070 128 - 110733352 GCTGCCTGCATGACCCTCCGGAGGCGCGGGGAGAAGGCGACCATCAGCATCCAAGAGCATATGGCCATCGACGTGTGTCCCGGGCCCATCCGGCCTATCAAGCAGATCTCCGATTACTTCCCCCGCTT s canFam1.chr9 38051641 128 + 53642819 gctgcCTGCATGACCCTCCGGCGGCGCGGGGAGAAAGCGACCATCAGCATCCAGGAGCATATGGCCATCGACGTGTGCCCCGGCCCCATTCGGCCCATCAAGCAGATCTCCGACTACTTCCCCCGCTT s galGal2.chr19 6600226 125 + 9463882 GCCGCATGCATGACACTCCGAAAA---GGAGAGAAAACGACCATAAGTATCCAGGAGCACATGGCTATCGACGTCTGCCCCGGCCCCATCAAACCCATCAAGCAGATCTCCGACTACTTCCCCCGCTT s fr1.chrUn 283105882 124 + 349519338 CCAGCCT-CATGACTGTGCGAAAA---GGGAAGAGCTTAGCCATCACCATCCAGGAGCACATGGCCATCGACGTGTGTCCAGGCCCCATTCGTCCCATCCGCCAAATCTCTGCCTACTTTCCTCGCCT s danRer1.chr5 16513914 125 + 40038624 GCTGCATGAATGACACAACGCAAA---GGCGAGAAGACGACCATCAGCATCCAGGAGCACATGGCCATTGATGTATGTCCAGGTCCCATTCAGCCAATCAAGCAGATATCTGACTATTTCCCCCGTTA a score=100.0 s hg17.chr17_random 172603 1 + 2618010 c s danRer1.chr5 16514039 1 + 40038624 C a score=1500.0 s hg17.chr17_random 172603 1 + 2618010 c s panTro1.chr19 82376354 1 - 82489036 c s mm5.chr11 46240528 1 - 121648857 C s rn3.chr10 47579198 1 - 110733352 C s canFam1.chr9 38051769 1 + 53642819 C s galGal2.chr19 6600351 1 + 9463882 C a score=10010.0 s hg17.chr17_random 172604 11 + 2618010 ccgcggggcct s panTro1.chr19 82376355 11 - 82489036 ccgcggggcct s mm5.chr11 46240529 11 - 121648857 CCGCGGGGCCT s rn3.chr10 47579199 11 - 110733352 CCGCGGGGCCT s canFam1.chr9 38051770 11 + 53642819 CCCCGGGGCCT a score=15865.0 s hg17.chr17_random 172615 37 + 2618010 gcccccggacgccgggccccgagccgctgcacccccg s panTro1.chr19 82376366 37 - 82489036 gcccccggacgccgggccccgagccgctgcacccccg s mm5.chr11 46240540 37 - 121648857 CCCCCCTACCGCCGCGCCCCGCGCCCCCGCGCCCCCG s canFam1.chr9 38051781 37 + 53642819 GCCCCCGGACGCCGGGCCCCGcgccgccgcggccccg a score=51524.0 s hg17.chr17_random 172652 64 + 2618010 gacgcccccgcgcgcccggctgtggccggtgccggccgccgcagcccctccgacggcgcccgcg s panTro1.chr19 82376403 64 - 82489036 gacgcccccgcgcgcccggctgtggccggtgccggccgccgcagcccctccgacggcgcccgcg s mm5.chr11 46240577 64 - 121648857 GACGCCCCCGCGCGCTCTCCCGCAGCCAGCGCCAGCCCCCGCAGCCCCTCCGACGGCGCCCGCG s rn3.chr10 47579261 64 - 110733352 GACGCCCCCGCGCGCTCGCCCGCAGCCACCGCCGGCCCCCGCAGCCCCTCCGACGGCGCCCGCG s canFam1.chr9 38051818 64 + 53642819 gacgcccccgcgcgccccgccgcggccagcgcgggccgccgcagcccctccgacggcgccCGCT a score=44128.0 s hg17.chr17_random 172716 37 + 2618010 AGGACGACGAGGATGTGGACCAGCTCTTCGGAGCCTA s panTro1.chr19 82376467 37 - 82489036 AGGTCGACGAGGATGTGGACCAGCTCTTCGGAGCCTA s mm5.chr11 46240641 37 - 121648857 ACGACGACGAAGATGTGGACCAGCTCTTCGGAGCCTA s rn3.chr10 47579325 37 - 110733352 ACGACGACGAAGATGTGGACCAGCTCTTCGGAGCCTA s canFam1.chr9 38051882 37 + 53642819 ACGACGACGAGGACGTCGACCAGCTCTTCGGATCCTA s galGal2.chr19 6600443 37 + 9463882 AGGACGACGAGGATGTGGACCAGCTCTTTGGGGCGTA a score=25639.0 s hg17.chr17_random 172753 37 + 2618010 ------------cggctccagcccgggccccagcccgggtcccagcccc s panTro1.chr19 82376504 37 - 82489036 ------------cggctccagcccgggccccagcccgggtcccagcccc s mm5.chr11 46240678 37 - 121648857 ------------CGGAGCCAGCCCAGGCCCCAGCCCCGGCCCCAGCCCC s rn3.chr10 47579362 37 - 110733352 ------------CGGTGCCAGCCCAGGCCCCAGCCCCGGACCCAGCCCC s canFam1.chr9 38051919 49 + 53642819 cggcccgggccccggccccggcccgggccccggcccgggccccgccccg a score=7939.0 s hg17.chr17_random 172790 18 + 2618010 GCGCGGCCGCCAGCCAAG--------------------- s panTro1.chr19 82376541 18 - 82489036 GCGCGGCCGCCAGCCAAG--------------------- s mm5.chr11 46240715 18 - 121648857 GCGAGGCCGCCCGCCAAG--------------------- s rn3.chr10 47579399 18 - 110733352 GTGAGGCCGCCGGCCAAG--------------------- s canFam1.chr9 38051968 18 + 53642819 gggcggcccccccccaac--------------------- s danRer1.chr5 16514131 39 + 40038624 AAGCGGATGCCAACCGGGATGAGGACGACCTGGACCAAG a score=43012.0 s hg17.chr17_random 172808 55 + 2618010 CCGCCG-----------------------------GAGGACGAGCCGGACGCCGACGGCTACGAGTCGGACGACTGCAGTAAGT s panTro1.chr19_random 16306897 54 - 57627672 CCGCCA-----------------------------GAGGACCAGCCGAACGCCAAAGGCTAGGAGT-GGACGATTGCAGTAAGT s mm5.chr11 46240733 55 - 121648857 CCCCCC-----------------------------GAGGACGAGCCGGACGTCGACGGCTACGAGTCAGACGACTGCAGTAAGT s rn3.chr10 47579417 55 - 110733352 CCCCCC-----------------------------GAGGACGAACCGGACGCCGACGGCTACGAGTCAGACGACTGCAGTAAGT s canFam1.chr9 38051986 55 + 53642819 cccCCG-----------------------------GAGGAAAACCCGGACCCCGACGGTTACCAGTCCGACGCCTCCAAAAAGT s danRer1.chr5 16514170 84 + 40038624 CCTTCGGCGCCACTGCACTTGTGGCCAGCAAGAAAGAGGAAGAGCCGGACGTGGAGGGCTACGATTCAGACGACTCCAGTGAGT a score=-734.0 s hg17.chr17_random 172863 219 + 2618010 TTCC-----CACGCGCCGA-----CTTCGCGCCCCCTCCCCTGGCTCGGGCTCGGC---CCCCCCACGGCCTCGCGGCTTCCCTCCGCCGGTCCC----CCTCGCG-CGCTCGCGCTCTGCCTCGGTTCACAACCCC--GCCGCGGG--------CTTGCGGGCCCCTGGC---GCACTCGGTGCGCTCTCCGCGCCCTGCCCA------------CCGGCCTCGAGCCCTCCCCCGACCCAGGCCGGACAGGAGGGAAGTT s panTro1.chr19_random 16306951 216 - 57627672 TTCC-----AACTCGCCGA-----CTTCGCCCCCCCTCCACTGGCTCCGGCTTGGCGGTCCCC----GGCTTCGGGG-TGCCCTC----GGTCCCTCCCCCTCGCGTCG-TCGCGTTCTCCTTTGG--CATAACCCCCCGCCGCGGG--------GCCGCAGACCCC---CTAAGCGCTTCGTGCGCTCTCCGCGCCCTGCCCA------------CCGGCCCCGACCCCTCCCCCGACC-AGACGGGAGAGGTGGGAAGTT s mm5.chr11 46240788 99 - 121648857 TTCC-----CAGTCGCCGG-----CCGCTCGCCCCCTCCCCGCACCCGGG---------TCCC---------CGCAG------------GG----------------CA----------------------AGCGCC--GCCG---------------------------C----------------------CGCCCGGAACA---------------------------------ACC-GCACGGGAGAGCTGGGAAGTT s rn3.chr10 47579472 99 - 110733352 TTCC-----CAGTCGCCGG-----CCGCGCGCCCCCTCCCAGCACCCGGG---------TCCC---------TGCAG------------GG----------------CA----------------------AGCGCC--GCCG---------------------------C----------------------CGCCCAGTACA---------------------------------CCT-GCACACAAGAGCTGGGAAGTT s canFam1.chr9 38052041 222 + 53642819 TTCCCCCGGCAGAGGCCGGGGGccccgccccccccccccccccggcccgg---------cctc---------cgcgc-gctcccc----gaccccgacctcgc----cgcccgcgcccggcctccgcgcg-ctccct--gtcgccggcacccactcccgcggggccg---c------ccccgcccgctccgcgcgcccttcgcaaaccctgcggacccaaccccgacccctccccgggcc-cGTACGGAGAGGTGGGAAGTT a score=134911.0 s hg17.chr17_random 173082 368 + 2618010 CGGGGGCACCCCCTGGGGGTGTCCCATTTCCGGGGC------CGGGTTCCTCGGAGCCGGCGCCGCGCCCCCTCCCTGCCAGCCCGCCCTCCCGGAGCTCCGGCGCGGGCGGCTGCTTTTGTTCCCGGGAAGGGCGGAGCTGCGTCCCGGGGAGACACCAGTTGCTGCCGGCCGCGCGGTCGCTCCCCGCTC-----------GCCAGCCGCTCCGGGAGGGCCTCGCGGCCGAGGGTCGGGG---CTGGGGCGAGCTGGGGA-GGGGCCCGAGGCTGGGAGCGGCCCGGCCTCCCGCGTGGTCCCGGCGGCCCGCAGAGCGCAGCTGCTTTGCTGGCGCGC-GAGCAGAGG-ACCAGGAGGACCGCGGGGCCGCTTGTCCTTTGGAAAAA- s panTro1.chr19_random 16307167 336 - 57627672 TGGGGGCACCCGCTGTGGGTGTCCCATTTCCGGGGC------TGGGCTCCGGGGAGCCGGCGCGGCGCCCGCTCCCTGCCCGCCAGCCGTTTGGGAGCTCAGGCGCGGGCAGCCGCTTTTGTTCCCGGGAAGGGCGGAGCTGCGTCCCGGGGAGACACGCGTTGCAGCCGGCAGCGTAGTTGCTCCCCGCTG-----------GCCGGCCGCTCCGGGAGGGCCCCGCAGCGGAgggtcgggg---ctggggcgggctggggagggggcccagggctggggccggTTCGGCCTCCCG-----------------------------------GGTGGCGCGC-GGGCCAAGGAACTAGGAGGACCGCCGCGCCGCTTGTCCTTTGGAAAAAC s mm5.chr11 46240887 334 - 121648857 TGGGGGCGTCCTCTG-GGGCGCCCCGTTTCCAGGCC------TCCGCTCCCCGAGGCGCGCCCCGCACCCCTTCTCGGCCCGCGCGCC----AGGAGCTCCTGCGCGGGCGGCGGCTTTTGTTCCCGGGAAGGGCGGAGCTGCGCCCCGGAGAGACACCAGTTGCTGCGGGCCGCGCGGTTGCGCCAGGCCCCAGAGCCCTGTGCGGGCTGTCCCGGGGTGTCCACCCG---GAGAGCTGGGGACCCTGCGGT-AGCTGGGGC-GGG--------------------------CCCG----------GCGGCCCGCACCGCGCCACGGCTCTGCTGGTGCGC-GGGCCGAGA-ACC---AGGACCGCGGGGCCGCTTGTCCTTTGGAAAAA- s rn3.chr10 47579571 336 - 110733352 TGGGGGCGTCCTCTGGGGGCGCCCCGTCTCCAGGCC------TCCGCTCCCCGGGGCGCGCCCCGCACTCCTTCTCGGCCCGCGCGCC----GGGAGCTCCAGCGCGGGCGGCGGCTTTTGTTCCCGGGAAGGGCGGAGCTGCGCCCCGGAGAGACACCAGTTGCTGCGGGCCGCGCGGTCCCTCCCGGCCCCAGA--------------GCCCTGTGCGGGC----------AGTCCCGAGG------TGGCCACCTGGAGA-----------GCTGGGGACCCTGCGGTAACTGGGGCGGGCCCCGCAGCCCATACCGCGCCGCGGCTCTGCTGGTGCGCGGGGCCGAGG-ACC---AGGACCATGGGGCTGCTTGTCCTTTGGAAAAA- s canFam1.chr9 38052368 329 + 53642819 TTGGGGCGCCCGCTG-AAGCGT-CCGTTTCCGGGCCCGGATATGCGCTccc--------gcgccgcgccccctctcggcccgccggcg----gggAGTTCCGCCGCGGGCGGCGGCTTTTGTTCCCGGGAAGGGCGGAGCTGCGCCCAGGGGAGACACCAGTTGCTgcgggccgcgcggtc-ctccccgccc------------ggagccgctgcgggccggcctcgccgccgaggggcgggg------------gcgggggc---------------cgggcgggcctccctcccgagtgggcccggcggcccgcagagcgcagcggctc--ccggtcc---gggccgagc-acg--gggggccgcggggccgcTCATCCTCTGGAAAAC- a score=57634.0 s hg17.chr17_random 173450 159 + 2618010 CCTTGGCGTTTCCTCCTCCGGTGTCCATGGACCCCGCCGCAGCCCTCGCCAGGGCCGCGCAC-CTTCGCCCA-----------CCTGTTACGC-CCGCGGCCCCCGGGCAGAGAGGGCCCCCCAGCCCGCTCC-CCCTCCTCCCGGACTGAGCCC------TGAGCCCCCGGGAGCAGG s panTro1.chr19_random 16307503 145 - 57627672 CCTTGGCGGTTCCTCCTCTGGTGTCCGTGGACCCCGCCGCGGCGTTCTCCAGGGCCGCGGAC-CTTTGCCCA-----------CCGGTTGCGC-CCGCTG-CCCCGGGCAGAAAGGAC-------------CC-CCCTCCTCCCGGACCGAGCCC------CGAGCCCCATGGAGCAGG s mm5.chr11 46241221 140 - 121648857 CCTTGGCGGTTCCTCCTCCCGCATCTGCGGACCCCGCCG--------GCCCTGGCCGTGGAC-CTTCGCCCA-----------CCTGTTACGC-CGGCTT-CCCCGGTCAGGAGGGTC---CCCAGCCGCGCC-CCCTCCTCTCGGA-------C------TCAGCCCCAGGGAGACAA s rn3.chr10 47579907 138 - 110733352 CCTTGGCGGTTCCTCTTCCCGCATCCGCGGACCCCGCTG--------GCCCTGGCCGTGGAC-CTTCGCCCA-----------CCTGTTACGC-CGGCTT-CCCTAATCAGGAATGTC---CCTAGCCA--CC-CCCTCCTCACGGA-------C------TCAGCCCCAGGGAGACAA s canFam1.chr9 38052697 158 + 53642819 CCTTGGCCGAGCCACCTcccgcgcccgcggaccccgccgcggcgcT-GTCCCGGCCGCCGAC-CTTCGCCCA-----------CCTGTTACGC-CCGCTT-CCCAAGGCCGGGAAGGGCCCCCAGCCCGCGCCGCCCTCTCTCCGGGCTGAgccc------cgggccccgggcagtggg s fr1.chrUn 310348996 167 + 349519338 CCTTGGTG-----TCTTCCAGATGATGCCAAGTCAGCCC-----CCCATCCTGTCCAGGGTCACTTCGCTCCTGGCAAAGACTCTGGTGGCGCTCGGGCT-TCAAGAGCAGCGGCCGGCTCTGAACCTGCTGC-CCCTCCTGCTGACCTCACTCCGACAGGCGAGAACCCCTCAGCAGG a score=43179.0 s hg17.chr17_random 173609 332 + 2618010 CAAGCGCCGGAGTCCCGNGGACCGAGGCNCCNGGCCGGTGGGCGCTCCTGGCGCCTTTTCCCGTCCCCGAGGGTGCCTGTCCGGCCCGAGCCGGGACTGGCTGGGAAACCGAGGCCGGAAGAGGTCGCA------GTCCAG---------TGAGGAGTCGGTTTGCG--CGGGGT----GGGGATGGCATGTGAGA---------------ACCCCCT----------------CCTAGCTCAGCTGTGGCTCCAGACTTGTCACTGAGACCTGGAAAA----------------CCAGCGTCTCGTCAAACCCCAGCCCT-----------TCCC--GGGAT----------GTGGCCC---------------------------TTCTCCAGGGCTGGTGCTGCCCCTC-CCCTGCGCAGCAGGGATGTCTGCGCCTGGCCTGGGCAC s panTro1.chr19_random 16307648 347 - 57627672 CAAGGGCCAGAGTCCCGGGG-CCGAGG--CCCGACCGGCGGACGCTCC-GGGACCTTTTCCCGCCCCCGAGAGTGCATGTCCGGCCGGGGCCGGGACTGGCTGGGAAACCGAGGCCAGAAGAGGTCGCA------ATCCAG---------CGAGGGATCGGTTTGTG--TGGGGT----GGGGGTGGGATGGGAGA-----------------CCCCTCCCCAACCCCACCAGCCCCAGCCCAGCTGTGGCCTCAGCCATGTCACTCA------GAAAA----------------CCAG-----CGTCAAACCCCA-CCCT-----------GCCC--AGAAT----------GTGGACC-TTGCCTGGTGAGAGTCCCGCTCGGATTTCCCCAGG---------GCCCCTC-CACCGCGCAGCAGGGGTGTCTGCGCTGGGCCCAGGCAC s mm5.chr11 46241361 358 - 121648857 CAGACACCAGGGTCTC-----CCGAG---CCAGGCCAG-GACCTCTCCTGGTGGCTTGTGTGGTCCCTGAGGATGCCTAACCCTGCCCACCAGGGACCATCCAGGAAGCCAAGGAGGGAAGAAGTCACATCACCTGTCCCGTGAATTTGCTGAGGGCTGTGGCTGCGGCTGGGGT-------GACTACATGGAAGG------------------------------------GCCCCAGCCCAGCTGTCACCCTG----TTTCACTTA------GAAAAAAAAAAAAAAACAAAGCCAG-----CCTCAGAACCTAGTCATAGATGCCATGGGCCCATGGGATTG-------GGGGGACC-CATCCCAGC-----------------TTGCCCAAGGCAAAAGCAGCCCCTC-CTCCGTGCAACATTGGTAGTTATGCCTTGTCTGGGCGT s rn3.chr10 47580045 345 - 110733352 CAGACAACAGGGTCTC-----CTGAG---CCAGGCCAG-GACCTCTTCTGGTGTCTTGTGTGGTCCCTAAGGGTGCCTGATCCGGCCCACCAGGGACCATCCAGAAAGCAAAGGAGGAAAGAAGTCACATCACCCGTCCCA---------TGA---ATTTGCTAGGGGCTGGGGTTGGGGGTGACTACATGGAAGG------------------------------------GCCCCAGCCCAGCTGTCATCCTG----GTTCACTTA------GAAAA--------AAACAGAGCCAG-----CCTCAAAACCTAGTCAT--------GGGTGCCATGGGACCGTGGGATTGGGGGATAGCATACCAGC-----------------TTCCCCAAGGCAAAAGCAGCCCCTC-CTCCGTACAACATTTGTAGTTATGCCTTGTCTGGGCGT s canFam1.chr9 38052855 301 + 53642819 cgagcgccggggcccccggg-gcgagg--ccgggccggcgggcgcTGCTTG---CCTTTCGGGTCTCCGAGAGCGCCTGCCCCGCGGGACCCGGGACTGGAGGGGAAACCGAGGCCGG-----------------GTTCGG----------GAGGG----GTTAGCG--CGGGAT---GGGGGAGGGGCTGGGAGGTAGCGCAGCTCGCTGGGCCCCA----------------CCCAGCCCCGCTGTggcccc-----cctccccgg---------------------------cccg-----ccggggggcgcACCCTT-------------CC--GGGCA----------GGGG------------------------------TCGCTCGCGGCCTGAGCCGAGGGTCGCTCGGCGCCGCGAGGGTGGCCGCGCCTGGTTTGCGGGC a score=439090.0 s hg17.chr17_random 173941 1379 + 2618010 TCACCAGGGCCTGTGGGCTGCGGGCCTGGAGTTTCCCA-AGCATCAAATGTGCCACCAGAAGCTGAAGGTAGGGATTACCAGTGCC-CCCGGGGC----ACAGACCCCCC-ATCGCCCCACCTGGGGAGGCCCATCAGCAGTG-GCCGGTTAGAGCAGGGCCCCTGT--------AGGGGAAACTGCCTGCTTTGCACTTTCTAGAGGCCTGGACCACGGCCCTCGGGCCAGCGCCTGGCACATGAAGGCCCTGCCCTGGGGCGTGGGGGCTGGGGAGCAGTCTTGTCCCTCCACTTTCCTGCCAGCTTGGGGAGATTGGGTCGGAAGAGTTTTTT---GCCCTCAGGGCTGTGCCCTAGATCCACCCCCCCTCCCCTCTGCCCCTGGCACCCTGTGCGAAGCTCACCCTGG-ACTTGGTGATCCCCTGGGTGGGCCCTGAGTGGGACC-CAAGTAACTGCTTTGGCTGCCCTGAATCCAAAGCCTCCCCCAGAAGAACGGATGGGAAAGTTGTTCCCATTTCTGGCA-----TCTCTGCTGCTGCACCAAGGAAGTAAGAGGGGAG-----------GGC------------AGAGCTTCAGGCCACCCTCCTGGTGCCACAGAGGGCCCTCTGCATGGCGAATGGCCAAGAGG-------CtttttctttttctttttttttttttttttGCTGTCTCTGAACCCACAAAGCAAGGAGG---GGACCAGGAAGCTAGAAACTCAGGCCAGCC---AGCCCCATCTCCAATCCATCAGCTCAGCAGCCCTTCAGGGAGCA-TGTC------CTGGCAGCAGG----------------------GCTGGGCCCCTGGCCTGAGA-----TACATGCGGTG------CAGGGGCCAGACTCACATGAGGTCAGCAGTGCAGGGCAGAGCTGGATGCAGCTTTGCCAGCTTGAACTGTGGGCTGGCCACACCCGTATTATCAGGACATGCCAAAGAAATGCTGAAGACGGGCTCAGAGGAGCTAANGGAGGACGGTGTGCCACTGAGCTAGGGCCAGCTTGGGCCCCTGTCGCCCCCTTCGAGGGGGGCCCCACCCTAGGCTTGGATCCTATGGGAGGCTGA-CAAACATCCTAGGCCCAGAAGCCCAGAAATCTTGGCTCTTGTCCATGGTNGGGGGAACAGGTTCTGGGGTGGGACTGCCTTCCACCCAGTACCCCAGGCGGTGCCCCCCTCTGGGCTGTGACAACCAGATC-CTTAGAATAAGCCTCAATGATTCAAGCCAGATGGTTCATTACGGCTTTAGCCAGGGTTATGCTATTTGCTGCCCTAATTATTGGATTATCTCTGTTCTGACAAAAAGAAATGAGGGCGGTTGCTCTGTTGTCCAAGGCAGAGAGTGAAGTGCTGTTTATTTACTCAGCC-TTTTCTCCTGGCTTTTTAAAGCCCTTTCTT----------TATTAAGT-------------CATGTCAAAG----------------CACAAGCACATA s panTro1.chr19 82377689 1372 - 82489036 TCACCAGGGCTTGTGGGCTGCGGGCCTGGAGTTTCCCA-AGCATCAAATGTGCCACCGGAAGCTGAAGGTAGGGATTACCAGTGCC-CCCGGGGC----ACAGACCCCCCCATCGCCCCACCTGGGGAGGCCCATTAGCAGTG-GCCGGTTAGAGCAGGGCCCCTGT--------AGGGGAAACTGCCTGCTTTGCACTTTCTAGAGGCCTGGACCACGGCCCTCGGGCCAGCGCCTGGCATATGAAGGCCCTGCCCTGGGGCGTGGGGGCTGGGGAGCAGTCTTGTCCCTCCACTTTCCTGCCAGCTTGGGGAAATTGGGTCGGAAGAGTTTTTT---GCCCTCAGGGCTGTGCCCTAGATCCACCCCCC-TCCCCTCTGCCCCTGGCACCCTGTGCGAAGCTCACCCTGG-ACTTGGTGATCCCCTGGGTGGGCCCTGAGTGGGACC-CAAGTCACTGCTTTGGCTGCCCTGAATCCAAAGCCTCCCCCAGAAGAACGGATGGGAAAGTTGTTCCCATTTCCGGCA-----TCTCTGCTGCTGCACCAAGGAAGTAAGAGGGGAG-----------GGC------------AGAACTTCAGGCCACCCTCCTGGTGCCACAGAGGGCCCTCTGCATGGCGAATGGCCAAGAGG-------Cttttttttttt-----tttttttttttttGCTGTCTCTGAACCCACAAAGCAAGGAGG---GGACCAGGAAGCTAGAGACTCAGGCCAGCC---AGCCCCATCTCCAATCCATCAGCTCAGCAGCCCTTCAGGGAGCA-TGTC------CTGGCAGCAGG----------------------GCTGGGCCCCTGGCCTGAGA-----TACATGCGGTG------CAGGGGCCAGACTCACATGGGGTCAGCAGTGCAGGGCAGAGCTGAATGCAGCTTTGCCAGCTTGAACTGTGGGCTGGCCACACCCGTATTATCAGGACATGCCAAAGAAATGCTGAAAACGGGCTCAGAGGAGCTAA-GGAGGACGGTGTGCCACTGAGCTAGGGCCAGCTTGGGCCCCTGTCGCCCCCTTCGAGGGGGGCCCCACCCTAGGCTTGGATCCTATGGGAGGCTGA-CAAACATCCTAGGCACAGGAGCCCAGAAATCTTGGCTCTTGTCCATGGT-GGGGGAACAGGTTCTGGGGTGGGACTGCCTTCCACCCAGTACCCCAGGCGGTGCCCCCCTCTGGGCTGTGACAACCAGATC-CCTAGAATAAGCCTCAATGATTCAAGCCAGATGGTTCATTACGGCTTTAGCCAGGGTTATGCTATTTGCTGCCCTAATTATTGGATTATCTCTGTTCTGACAAAAAGAAATGAGGGCGGTTGCTCTGTTGTCCAAGGCAGAGAGTGAAGTGCTGTTTATTTACTCAGCC-TTTTCTCCTGGCTCTTTAAAGCCCTTCCTT----------TATTAAGT-------------CATGTCAAAG----------------CACAAGCACATA s mm5.chr11 46241719 1243 - 121648857 TCCCCAGGGCCTCTGGGCTA-GGGGCTGACTGTTCCCC-AGCATACCATGTGCCTCTGGACGCTAAGGATGGGAGTTCACAGTGTCACCCTGGGA----ACAGACTCCACTGT----TCACTTTAGAGAGCCCATCAACAGAG-GTGGATCAAGCCTGAGCT---------------GGAACACTGCCTTTTGTGTGCGTTCTAGA--CCTGGACCCC----------CTAACTCAGGGCATATGGAGAACCTACCCACAAGCATAAAGGCTGGGGAGCAGGCCTTGCCCTCTGCTGTCCTGCAGGTTGAGGGAAACTAGGTGGGCTGAATTTATTAAAATCTTCAGAGCTGCGCCCTGGATTTACTT----TCTGCCCAATTCCTGGCACTCTGTGCAAGG---ATCCAGG---CTGGCTGCCCTCTAGGGAGGCTCTAAGTAAGACCACAGTTAGCCCCCTTGG------GGGATCCAGAGTCATCCTGGGAAGAGAGGATAG--AAGTGATTCCCATTTCCAGCATTC--TCTCTGCAGGTG-----AGGGAGTGAGCAGGTGGACAAAGATTGTGCC------------TGAGCCACAGGCCACTCTCCAGGTGCCATAGC-AGCTCAAGGGATGACATAAGACCAAGAG--------------------------------------------------------------GGAGG---AAACCCACCAG--AAAGAATAAAGCAAGCCAGAAGCCCCACCTCCTGTCTGTCAACTCCGGTG-TTTTCAGGACACT-CTTTGAACAGCTGGGAGTGGGGCAAAC--------AGAACCATGCTGTGTCCCTGGGCTCAGG----CCACA---GGTGTCCTCCCTGGAGACAGGTTCACATGAGTTGGATC-------------CTAGATACAGCTTTCTCAACTGAAACTGGGGGCTGGCCACACCCAGACGACTATGCTACACTAAC-AAGTGTGGAGAAGAGGCCT---GGAGCTTG-----------------------CAGAGCCGG-----------------------GAAGTGGGTATGAAGCTGGGC----ATCTCATTGGGG--------------------CTAAGAGCACGAGGATTGTAGCTCTCAC--------AGGTGAGGAGACCCT-GAGCAGGACCACCCTGTACCTGGCACCCAAGGCTGTG-CACCCTCTGAGCTCTGACAACCAGATCTCTTAGAATAAGCCTAAGTGATTCAAGCCAGATGGTTCATTATGGCTTTAGCCAGGGTTATGCTATTTGCTGCTCTAATTATTGGATTA--TCTGTTCGGACAAAAAGAAATGAGGGCGGTTGCTCTGTTGTCCAA-GCAGAGGCGCAAAAACAGCCTGTTTGCTTAGCCATGTTCTC----CTCTTTAAAGCCCCTCCCTTGCCTGTCACTACAAAGTATGCAAGTATGGGCACATGAACA----------------CACACACACACA s rn3.chr10 47580390 1240 - 110733352 TCCCCAGGGCCTCTGGGCTA-GGGGCTGACTGTTCCCC-AGCATAACATGTGCC-TTGGATGCTGAGGCTGGGAGTTCACAGTGTCACCCTGGGA----ACAGACTCCACGTT----TCACTTCAGGGAGCCCATCGACAGAG-GTGGATCAAGTCTGGGC--------------AGGGAACACTGCCTTTTGTGTGTTTTCTAGG--CCTGGACCCT----------CTAACTCAGGGCACATGGAGGCCCTACCCACAAGCATAAAGGCTGAGGCGCAGGCCCCGCCCTCTGCTCTCCTGCAGGCTGAGGGAAACTAGAGGGGCTGCATTTATTAAAGTCTGCAAAGCTGCGCCCTGGATTTACTC----TTTGCCCAGTTCCTGGCACTCTCAGCAAGG---ATCCAGG---CTGGCGGCCCTCTAGG-AGGCCCTAAGTAGGACCACAGTTAGCCCCCTTAG-----TGGGGTCCAGAGCCATCCTGGGAAGAAAGGATAGG-AAGCCATTCCCATTTGCAGCATTCTGTCTGAGCAGGTGGACAAAGATTGT---------------------GCC------------TGAGGCACGGGCCACCCT-CAGGTGCCATAGC-AGCTCAGGGGATGACATAAGGCCAAGAGGGAAGAAACCTAGTCATTTT-----------------GGCTATCCTGAAACCCATCA-----GAAGG--------------------AATAAAGCAGGCCGGAAGCCCCACCTCCGGTCTGTCGACTCTGGCGTTTTTTCAGAACTC-TGTC-AGCAGCTGGGAGTGGAGCAAAG--------GGAACCGTGCTGAGTCCCTGGGCTCAGG----CCACA---GGTGTCCTAGCTGGAGACAGGCTCACATGAGTAGGGC--------------CTAGATACAACGTTCTCAACTGAAACTGGGGGCTGGCCACACCCAGGTGGCTGTGATACACTGACCAAGTGTGGAGAAGAGGTCT---GGAGCTTG-----------------------CAGAGCTGA----------------------GGAAGTGGGGATGAAGCTGAGC------------------------ATCTTATTAGGGCAGAGAGCACAAGGGCTGTGGCTCTCAC--------AGGTGAGGAGAGCCC-GAGCAGGACCACTCT-------GTACCCAAGGCTGTG-CACCCTGTGAGCTCTGACAACCAGACCTCTTAGAATAAGCCTAAGTGATTCAAGCCAGATGGTTCATTATGGCTTTAGCCAGGGTTATGCTATTTGCTGCTCCAATTATTGGATTA--TCTGTTCGGATGAAAAGAAATGAGGGCGGCTGCTCTGTTGTCCAG-GCAGAGGCGCGAAAACAGCCTGTTTGCTTAGCCTGGTTCTC----CTCTTTAAAGCCCCTCCCT----------TGCT-GGT-------------CACCTCAAAGTATGCAAGTATGGGCACACGAACACACA s canFam1.chr9 38053156 1359 + 53642819 TCCCGTGGGCCTAGGCCCGG-GGGCCTGGAGTTTCCCCAAGCATAAAGTGGGTCTCTGGAAGCTGAAGGGGGAGATCACCAGTGTCACTGGGGGAGGTGGCCGACCTCTC-AGCGTCCTACCGAGGGAGGCCCGGGAGGAGAGAGCTGGAGGAGGCCTGTCCTCTGCCCTCCAAGGAGAGAAACTGTCCCCTGTGCACTTTCTGTGGGCCTGGACGCT--------GGCCGAATCCTGGGGTATTGAGGCCTTGCCTCTGGGTGTGGGGGC-GGGGAGCAGCCCTCTCCCTCCACTTCCCTGCCAGCTGGGGGAAATTGGGTTGCAGAGAGTATAT---GCCCTCAGGGCTGTGCCCCGAATCTTCCC----CACCCCCAGCTCCCCGCACCCTGGGCAAATCGCACCCCCTCACCTTCCATGCATCTGGGCAGGCCCTAACTGGAACC-CAAGTCACCCCTTTGGATGCCCTGAATCCAAAGCCACCTCCAGAAG---GGGTAGGGAACTTGTTCCCCTTTG-GACA-----TCTTTCGTGCTGTGCCAACGGAGTGAGAGGGCAG-----------GGCAGGGCTTCCACATGAACTTCAGGCAACCCTCCTGGTGCCACCAAAGGCCCTCTGGATGACACACTGTTACAGGGTGAGAAATCTTGTCATTTC-------------TTCAGGCCCTCCCTCAACCCCCAG-GTGAGGAGGAACAGTCCCGAAAGTCCCCAAAGCAGGTCAGCT----GCCTCATCTCCAGCCCATCGACTC--CAGTTCTCCACTGAGCACTGTC------CCAGCAGCAGAGAGTGTGGCAAAGGGGAACAGGAGTGGGTCTCACCACCCAGGGAGCTCACA-----TGTCCTAGCAGGGGACAGATTCACATGAGT------------------------CACAGCCTGGCCAGTCTGGATGGTGGGCTGGCCACACCCATATCACCGGGTGGTCTC---------CTGAAA-----------AAAGCTAA--GGAGGAGGCTTGTGGCTGAGCCTGGGCCAGCTTGGGTCAC--TTGTCCCCTTCAAGGAACAGCCCACCCCAGGCTTGGATCTCATCAGTGGCCGAGCAGACTTCCCAGGCATGGGGACACAGAAATCTTGGCTCCTTCCTGTG---GTGGGACCGGGTTCTGGGGTGGGACCACTCTCCAGCCCATACCCTGGCCTGGA--CCCCTCTCGGCTCTGACAACCAGATC-CCTAGAATTAGCCTAAATGATTTAAGCCAGATGGTTCATTATGGCTTTAGCCGGGGTTATGCTATTTGCTGCCCTAATTATTGGATTATCTCTGTTCTAACAAAAAGAAATTAGGGCGGTTGCTCTGTTGTCCAA-GCTGAGAATGAAGTGCTGTTTATTTATTCAGCCTTTTTTCCCCTTCTCTTTAAAGCCTATGCTT----------TATTAAGT-------------CACCTCAAGA----------------CACAAGCACGAA a score=15805.0 s hg17.chr17_random 175320 178 + 2618010 ACTCGCA---TGTTCCCAGCAGATCTCGAAGAGGGGCGATGACAGGGAGGAAAGGCAGTGAATGTCCCAATGAGGAGCAGGACCCAGTGTCGGCCCTGCCA--GTTCTCCTAGGGTGGC-------------CTCTGTGGCGTGCTGCCCTCCAGGTGGGCCGTGGGCCACACACCCCACACGCTGCCCCTACCTG- s panTro1.chr19 82379061 178 - 82489036 ACTCGCA---TGTTCCCAGCAGATCTCGAAGAGGGGCGATGACAGGGAGGAAAGGCAGTGAATGTCCCAATGAGGAGCAGGACCCAGTGTCGGCCCTGCCA--GTTCTCCTAGGGTGGC-------------CTCTGTGGCGTGCTGCCCTCCAGGTGGGCCGTGGGCCACACACCCCACACGCTGCCCCTACCTG- s rn3.chr10 47581655 107 - 110733352 ACACACACCTCATTCCCTGCTGAGCTT---------------------AGGAGGTCAGTGAA---------------AAAGACACAGCATCA----CGCTA--GACC-------------------------------------CCAGCACCCAGGT--ATCACAAGCTACCTGCCCC--------CCCCCATGTG- s canFam1.chr9 38054515 181 + 53642819 ATTCACA---TGTTCCAGACTGATCT--AATAGGGGCCATGATAGGGAGAAAAGGCAGTGAACATTGGGGTGAGA----------AGTGTCCTTCCTCCCACTGGTC-CCTAGTGTGGCCTGGCCCAGTGGACTCCACTGCCTGCTGCCCCCCAGTCAGGTTCTcccccccctcccccctccccctcccccctcccc a score=1962.0 s hg17.chr17_random 175498 10 + 2618010 AGAGGCTCTC s panTro1.chr19 82379239 10 - 82489036 AGAGGCTCTC s canFam1.chr9 38054696 8 + 53642819 --ATGCTCTC a score=1121.0 s hg17.chr17_random 175498 25 + 2618010 AGAGGCTCTCCTGCCCGGCACCCAC s canFam1.chr9 38054696 23 + 53642819 --ATGCTCTCCCACCCAACCTCCAC a score=4178.0 s hg17.chr17_random 175508 15 + 2618010 CTGCCCGGCACCCAC s panTro1.chr19 82379249 15 - 82489036 CTGCCCGGCACCCAC s mm5.chr11 46243091 15 - 121648857 CTACCTGCTGCCCAT s canFam1.chr9 38054704 15 + 53642819 CCACCCAACCTCCAC a score=248387.0 s hg17.chr17_random 175523 804 + 2618010 CTGTGGAAGCCCAGTCCATTCTTCAAAGCTGTAATCACtagagtgccatgggttgcaagtgacagataaccaactcagagtggcttaaacaa--tgaggaCAGCTGAGGTCTTGCTG----CACCAGGGTGCACCAATGCAGCAGCCCCTCAGCACTGTT-GGGGTGATGGTTCTGTCCATCTTTGCTCGTGGCTGTGCGTTTTTCCTTGTAGAGC-AAAATCAAGGCCCGTTTCCTATTCCTAAGGGTGTCTGGGTGAGGAAGGTTCAGGTGCAGACCAAAGTCAGAATGACGCTGTCAGTCTCCATCAGCCAAGCAGGAccctca-ggtccaaggtggctgctgcaggtccaggcatcacatgtaacaataaggtc---cttgactgggtaaggaattggtaaggaccgattccttttctcatgtctcagtttaagagcgaggaaacctctcccagaagtccccaggagacctgtccttttgtctcattggccagaattggatcacatgcccgtgtt-aaaccTGCC-CTGTGTGGTTCACCCAGGACCGGGTCAGGACCGATGCCTGTGCAGGTCTGGAGCAAGGACAAGG------------GGTTGAGTCCACCACAAAGGTTCTCCGTGTTAGGGGGCATATTCCAGCCCCCATGGGCTGTGGTGCCCCTTCCTTTGAGCCCAGAACCTCTTT-GGCCCCAGTCATGTTCTACCTGGACCTGTGATATTTGTAATGCACTCGAtgttacggcaccaactatgtggcagg-ctctgtgttagg-cacagagatacaagaat--gctgagaggcaacctctgacctgaggg s panTro1.chr19 82379264 805 - 82489036 CTGTGGAAGCCCAGTCCATTCTTCAAAGCTGTAATCACtagagtgccatgggttgcaagtgacagataaccaactcagagtggcttaaacaa--tgaggaCAGCTGAGGTCTTGCTG----CACCAGGGTGCACCAATGCAGCAGCCCCTCAGCACTGTCAGGGGTGATGGTTCTGTCCATCTTTGCTCGTGGCTGTGCGCTTTTCCTTGTAGAGC-AAAATCAAGGCCCGTTTCCTATTCCTAAGGGTGTCTGGGTGAGGAAGGTTCAGGTGCAAACCAAGGTCAGAATGACGCTGTCAGTCTCCATCAGCCAAGCAGGAccctca-ggtccaaggtggctgctgcaggtccaggcatcacatgtaacaataaggtc---cttgactgggtaaggaattggtaaggaccgattccttttcttgtgtctcagtttaagagcgaggaaacctctcccagaagtccccaggagacctgtccttttgtctcattggccagaattggatcacatgcccgtgtt-aaaccTGCC-CTGTGTGGTTCACCCAGGACCGGGTCAGGACTGATGCCTGTGCAGGTCTGGAGCAAGGACAAGG------------CGTTGAGTCCACCACAAAGGTTCTCCGTGTTAGGGGGCATATTCCAGCCCCCATGGGCTGTGGTGCCCCTTCCTTTGAGCCCAGAACCTCTTT-GGCCCCGGTCACGTTCTACCTGGACCTGTGATATTTGTAATGCACTCGAtgttacagcaccaactatgtggcagg-ctctgtgttagg-cacagagatacaagaat--gCTGAGAGGCAACCTCTGACCTGAGGG s mm5.chr11 46243106 745 - 121648857 GTGCAGAGG--GAATGCAGACCCCAAAGCTGCAATGACTAAGAGGCTTTGGACTGCAAGTACCATGAAATCAATTCAAAGTAGCTCACGCCAGCCGAG----GCAAAGGTCCTGCTGCAGACACCATGGTA-ACC--TGGAGCAGCCCTCCAGCATCCCTGGTGATGAGGCTTCTGTCAGTCCTTCCTCTCAGTCA-GCTCTTTCCCTCTTGGGCTGAAAACCAGGGCAGGTTCTCTATTCCCAAGGGCATATGGATAAGGAACA-TCAAATGCAGAACCTAGTCACAATGATGCTCTCAGACTCCATCAGCTAAGCGGGACCCTCATGATCCAAGGTGGCTGCTGTGGGTCCAGGCATCACATATA--TAGAAGATCTTATTTGATTTAAACAAAATATG------------TTCTATTCTCATGTC------TAGGATCCAGAAAA--TCTCTTAGAAGTTCCCAGGAGGCTTGTCCTTTTGTCTCATTGGCTAGAAGTGCATCACGTGCCCATGTT---------C-CCAAATGACTCACTCAG--CTAGGTCAGGACGGGAGCCCAGGGAGGTATGGAGCAAGGGTGAAGT-GGGAAACCATTGTCGGGTCTTCCTAGAAGGTTCTCCTGGGCA--TGGCATGTCGTAGCTAC--TGAAGTGC-ATGCCTCTTCCTTC--ACCCAGAATGCCTTTGGGCCTCCATCATATTCTATC---------------------ATATTCAACAGTATAATGCCAATTGTGTGTCAGGACACCGT-CCAGG-CATGG--------------GCTGGACCACAGTCTCTCATCTTAGGA s rn3.chr10 47581762 763 - 110733352 ---CAGAGG--GAACTCGGACCCCAAAGCTGCAATGACTGAGAGGCTTTGGACTACAAGTACCATGAAATCAGTTCAAAGTAGCTCACACCG--GCAGATCAGCAAAGGTCCTGCTGCAGACACCATGGTAAAC---TGGAGCAGCCCTCCAGCATCCCTGGCGATGAGGCTTCTGTCAGTCCTTCCTCTCAGCCA-GCTCTTTCCCTCTTGGGCTGAAAACCAGGGCAGGTTCTCTATTCCCAAGGGCATATGGATGAGGAACA-CCAGATATAAAACAGAGTCACAGTTTTGGTCTCAGACTCCATCAGCTAAGTGGGACCCTCGTGATCCAAGGTGGCTGCTGTGGGTCCAGGCATCACATATA--TCTAAGGTC---TTAGATT------GGATTTAGAATGAAATATTTTCTATTCTCATGTC------TAGGATCCAGAAAATCTCTCTTAGAAGTTCCCAGGAGACTTGTCCTTTTGTCTCATTGGCTAGAATTGCACCACGTGTCCATGTT---------C-CCAAATGATTCACTCAG--CTAGGTCAGGACAGGAGCCCACGGAGGTCTGGAGCAAGGGTGAAG--TGGGAACCGTTGTCGGGTCTTCCTAGAAGGCCCTCCTGGGCC--TGGCAGATCCTCGTTAC--TGATGTCC-GTGCCTCTTCCTTC--AGCCATAACACCTTTGGGTCTCCGTCATATTCTATC---------------------AC-TTCAACAGTATAATGACAACTGTGTATCAGGGCACCATATGGGGTCACAGAGGTCCAGGCATGGGCTGGACCACAGTCTCTGGTTTTAGGA s canFam1.chr9 38054719 654 + 53642819 CTGTGGAAGCCCAGTCCATTCTTCAAA-CTATGAGGACTAGAATG-TTTGGGTTGCAAATAACAAAAAA----CTCAAAGTGCCTGAAACAA--TGAGGACAG-TGAGAT-----GGCAAATGCTCAGGGAGGTTTGTGCCCAGGCTCGTCAACAACTCA-AAGGTGCTGGTTCTGTCCCCCTTTCCACCTGGCTGTGCTCTGCtcttcttaggct--------------------------------------------gacct--------------------------------------------------------ccctcctggtccagggtggctgctgttggtccaggtgtcacatgtaacactaagatc---ct-----------aaatatgagaaggacaagtttccttgcccatatctcggttggaaagtgaggagagctctcccag-agtccccaggagacctgtccttctgtctcattggccagaattgtgtcacatgcctgcgcttacaccTGCCGTTACATGATTCACCCTGGGCTGGGTCAGGAGTGGTGCCCATGAGCGCCTGGAGCAAGGATGGAGTGGAGGAAGCACTGT---------CCCAAAGGCCCTC---AGCTGGGAGCATTTCCCAGTCCCTGCTGGTTGCGAGTCCCCTTCCTTC-CGCACATGCCGGCTCA-GACCACAGTTTTAT---------------------------ATACTCAACATAAGAAGATCAGCTGTGTGTCGGG-CACTGTGCTGAG--------ATTTAAGAATG-CCTGAGACAGAGTCTCTGACATGAGGG a score=35393.0 s hg17.chr17_random 175738 70 + 2618010 AAGGCCCGTTTCCTATTCCTAAGGGTGTCT--GGGTGAGGAAGGTTCAGGTGCAGACCAAAGTCAGAATGAC s panTro1.chr19 82379480 70 - 82489036 AAGGCCCGTTTCCTATTCCTAAGGGTGTCT--GGGTGAGGAAGGTTCAGGTGCAAACCAAGGTCAGAATGAC s mm5.chr11 46243319 69 - 121648857 AGGGCAGGTTCTCTATTCCCAAGGGCATAT--GGATAAGGAACA-TCAAATGCAGAACCTAGTCACAATGAT s rn3.chr10 47581974 69 - 110733352 AGGGCAGGTTCTCTATTCCCAAGGGCATAT--GGATGAGGAACA-CCAGATATAAAACAGAGTCACAGTTTT s canFam1.chr9 38055973 72 + 53642819 AGGGCTGATTTCCTATTCCCAAGGGTATACGGGGGTGAGGAAAGTCCAGGTACAAACCAATGTCAGAATGAT a score=5387.0 s hg17.chr17_random 176327 120 + 2618010 tgttcaTCAAAACCAAGACAAACAGGTGACCCTACAGCGAGGGACAGGGAGGCAAGAACCCAGATGGAAAGCTCTGGCAGGCGGAGGTCACTCACAGAGAGGGCTCAGCCCTAAGACTGG s mm5.chr11 46243851 80 - 121648857 CAGTCACAGAAACTCAG-----CAAGAGGCCCAACA-TGAGGGATGGGGAGGCAGACATCC------------------------------TCA----GAGGCCTCAGCTCTGAGGCAGG s rn3.chr10 47582525 71 - 110733352 TACTCACGGAAACCCAG-----CACAAAGACCAACA-TGAGAGGGAGGGAGACAGGCCTCC------------------------------GCA----GAGGCCTCAGCTG--------- s canFam1.chr9 38055373 117 + 53642819 AGTTCGTGGAAACACAGAGGCACAAGTAGCCCAGCA-GTGACGAGAGGGAGGCAGCAACCC-AAATGGAAGTGCTGGTTTACATAGTTTACCCACAGAGAAGGTTCTGCTC-CAGGCTGG a score=122798.0 s hg17.chr17_random 176447 453 + 2618010 GAGGAGGGAGGAGGTGGGCTGACAGA------GGGAAAAgaggaaagggaggtgctcttggcagagggacagctgtgtacacaggtcctgaagtgtcagaaactcagcccagtgtaggcaaaacagtagagccaagtggctcaaagaaggggaagagacctatgaggaggccaaagcggtcatatcacacaaggtcttg--aatgccacaccaaggaggttgaactgagtccaggagttgatggagaacctttcaacaatttaaagca------------------gatgaatgaAGATGTTTATAAAAATCTTAACACTC---------GTCTCTAAGCTCCTGGGAAGCAGGGATG---------------------------------ATGGCTCATTTCTCT-CTGTCCCCCCTGCAGTGCCGGCCTGGCTGAATGGCT------GTTTCCCCAACTATAAAATGCTTTCAACACAAGCTTGATGATTTTCTATG-GTCCTTGCC---------------ACAATTGTTTTGTTTTTTTT s panTro1.chr19_random 7704025 453 - 57627672 GAGGAGGGAGGAGGTGGGCTTCCAGA------GGGAAAAGAGGAAAGGGAGGTGCTCTTGACAGAGGGACAGCTGTGTACACAGGTCCTGAAGTGTCAGAAACTCAGCCCAGTGTAGGCAAAACAGTAGAGCCAAGTGGCTCCAAGAAGGGGAAGAGACCTATGAGGAGGCCAAAGCGGTCATATCACACAAGGTCTTG--AATGCCACACCAAGGAGGTTGAACCGAGTCCAGGAGTTGATGGAGAACCTTTCAACAATTTAAAACA------------------GATGAATGAAGATGTTTATAAAAATCTTAACACTC---------GTCTTTAAGCTCCTGGGAAGCAGGGATG---------------------------------ATGGCTCATTTCTTT-CTGTCCCCCCTGCAGTGCCGGCCTGGCTGAATGGCT------GTTTCCCCAACTATAAAATGCTTTCAACACAAGCTTGATGATTTTCTATG-GTCCTTGCC---------------ACAGTTGTTTTGTTTTTTTT s mm5.chr11 46243931 474 - 121648857 --GGAAGGGGAAAAAAGGCTGGCAGAGTTAAGGGGAGTTGGGGGAGGGGAG-------CAGCAGAGGAATG------------------GAAATGTCAGAAGCACAGACCAGTGGAGGCATGGTAGAAGGAGCAAGTGTCTAAGGCAAAGGAGAGGGGC---TGATGAGGTCACAGCGATCATAT---AGAAAGGTGTA--AATGCCAAACTAAGGATGTCTCAACG---CCAT-----------GGACTTCTGAAAGACTTGAAGCAGGGAGTGGGGGTTGGGGGGGGGGATAAAGGAGCT----AAAGTCTCAGCTCT----------GTCTCTAGACTCC-GCAAAGTAGAGATATATTACTCATTCCTCGCATCACTCATTCCTTGCATCACTCATTCCTTG-CATCCTCTCCCACGGTGCCAACCTAGTTCAGGGTCTCA----ATCTCCCCACTTAT-AAGTGCTTTCAAGTCAGGCGTGATAATTTTCTATGCATTCTTGCCAATTTAAAAAAGAAAACATTTTTATTGTACTTTTT s rn3.chr10 47582596 412 - 110733352 GGGGAAGGAGAAAGAAGGTTAGCAGA------GTGGAGGGAGATTTGGGGGG------CAGCAAAGAAATG------------------GAAATGTCAGAAGCACAGGCCAGAGGGGGTA---CGGTAGAACCAAGTGTCTGAGACAAAGGGGAGGGGC---TGATGAGGTCAAGGCGATCAAAC---AGAAAGGTTTGTAAATGACAAACCAAGGATGGCT---CGACTCGAT-----------GGGCTTTTGAACGACTTAAAGCA-------------------GTGGAAAAGGGAGCT----TAAGTCTCAGCTCC----------GTCTCTAGACTCC-ACGAAGTAGAGATGT--------------------------------ATCATTCACTCCTCTGCATCCAACCCCACAGTGCCTACCTAGTCCA-TGCCTCA----GTTTCCCCACTTATGAAGTGCTTTCAAGTCAGGCTTGATGATTTTCTATACATTCTTGCCTATTTGAAAA-----ATATTTTTATTGTATTT--- s canFam1.chr9 38055490 414 + 53642819 GAGAAGGGAGGAAGCAGGCTA----A------GTGGAATTAGGAAAGCAAGATGCTCCTGACACAGGGACTGCCATGTGCACAGGTA--GAGGTAGAAGAAA--CAACCCAGAGGTGCCA---CAGT-----CAAGTGTCTGAAGTAAGGGAGAAAGACCCAGAATGAGGACAAAGTGGTCAC-----AGAGGGCCTTA--AATGCTACACCAAGGAGGTTAAACCAAGTCCAGGGGGCAGTGGTGAACCTTTGAATAATTTAAAGCG------------------GGAGAATGAATAGACTTCTGAAGGTCCTAAAGTTCTAATCCTTGGCCTCTGAGCTCCTGGGAGGCAGGGACAT--------------------------------AGGGCTCCTTCTTCT-TTGTCTCCCCTGCAGTGCTA----GGCTCAGTGCCTCATAGTGCCTCCCCATCTATGAAATGC-------------------ACTTTCTGTG-GTTCTTGCC---------------ACAGTTTTT----------- a score=-717.0 s hg17.chr17_random 176900 2 + 2618010 TT- s panTro1.chr19_random 7704478 2 - 57627672 TT- s mm5.chr11 46244582 1 - 121648857 -T- s rn3.chr10 47583008 2 - 110733352 TT- s canFam1.chr9 38055904 2 + 53642819 -TA a score=220562.0 s hg17.chr17_random 176902 452 + 2618010 AAAGTATTTGAGAGCNCTGACATTTTTCttnaaaaaaaaaaaaaaaaaaa----------------tCAGNGGCAGATTTCCTATTCCCAAGG---------GTGTCAGGAAAGTCCAGGTGCAAACCAAGGTTATGATGATGCTGTCAG------GTCTACATCAGCCAAGCAGGGG-GTGCTCGGCCTTAGAGGAGCCAACAGGGGCTTGAGCTTGATTTTCTCTGAATTAGCCCCATTAAAGCTCTGTAATTATCGACAAGCGGGTGACAACTCTCAAAGGCCCATTAGTGACCAACCCTCATTATTTTTCCGAAGATGTAAACTTCAGTGGGGTCATGTGATTGGAGC-GCTCCAAGGGCAGGGC---------ACTGTGGGT--CACAGAGAAGCACCTTCTCCTGCCCTTAGGGCCCTCCTCACGCCCAGCACAAGCCCA-AGGTGCTTTTCCAACTCGG--AGGGCTCTCCAGGGCAGCGGCTGAGCCCCCA s panTro1.chr19_random 7704481 447 - 57627672 AAAGTATTTGAGAGC-CTGACATTTTTCTT---AAAAAAAAAAAAAAAAA----------------TCAG-GGCAGATTTCCTATTCCCAAGG---------GTGTCAGGAAAGTCCAGGCGCAAACCAAGGTTATGAGGATGCTGTCAG------GTCTGCATCAGCCAAGCAGGGG-GTGCTCGGCCCTAGAGGAGCCAACAGGGGCTTGAGCTTGATTTTCTCTGAATTAGCCCCATTAAAGCTCTGTAATTATCGACAAGCGGGTGACAACTCTCAAAGGCCCATTAGTGACCAACCCTCATTATTTTTCCGAAGACGTAAACTTCAGTGGGGTCATGTGATTGGAGC-GCTCCAAGGGCGGGGC---------ACTGTGCCT--CACAGAGAAGCACCTTCTCCTGCCCTTAGGGCCCTCCTCACGCCCAGCACAAGCCCA-AGGTGCTTTTCCAACTCGG--AGGGCTCTCCAGGGCAGCGGCTGACCCCCCA s mm5.chr11 46244584 451 - 121648857 AAACTATTTTAGAGG-CTGATTTTTTTTCTTCCAAATACAAACAAAAAG----------------------GACGGATTTCTGATTCCCAGGGTGGAC----GGGTCAAGGGAGTTCAAGTGCAGAACAAGGTCA--------CCGCCAGCTGCCTGTCTGCACTGGCCCTGTTGGGGAACGCTCAGCCTCAGAGGAAGCAACAGGGCCTTGTGCTTGATTTTCTCTGAATTAGCCCCATTAAAGCGCTATAATTATCAGCAAGTCAGTGACAACTCTCAGAGGCCCATTAGTGACCAACCTTCATTATTTTTCCAAAGATGTAAACTTTCATCAGGGCCTGTGATCTGAGTGGCTCTAAGGGCAAGGCCCTCGAGATCCTGGGGCT--TGCAGAGAGGCACGTTCTCTCGTCCTTTGGGCCCTGC-CGTTGCCACCACCA--------TTGTCACCACCACTCTGCTCAGGCCCT-CAGATCAGTGG-TGAGTCCCCA s rn3.chr10 47583188 451 - 110733352 AAACTATTTAAGAGG-CTGACATTTTTCTTCCAAATACAAAACAAAAGG----------------------GACAGATTTCTGATTCCCAGGT-GGAC----AGGTCAAGCGAGTTCAAGTGCAGACCAAGGTCA--------CCGCCAGCTGCCTGTCTGCACTGGCCCTGTTGGGGAATGCTCAGCCTTGGAGGAAGCGACAGGGGCTTGTGCTTCATTCTCTCTGAATTAGCCCCATTAAAGCGCTATAATTATCAGCAAGTCAGTGACAACTCTCAGAGGCCCATTAGTGACCAACCTTCATTATTTTTCCAAAGACGTAAACTTTCGTCAGGGCCCATGATCTGAGTGGCTCTAAGGGCAAGGCCCTCGAGATCCTGGGGCT--TACAGAGAGGCATACTCTCTTGTCCTTTGGGCCCTGC-CATTGTCACCACCA--------CTGCCACCGCCGCTCTGCTCAGGCCCTTCAGGTTAGTGG-TGAGTCCCCA s canFam1.chr9 38055906 477 + 53642819 GAACTATTTGAGAGA-CTGACATTTTTCTTAaaaaaaaaaaacaaaaacaaaaacaaaaaAACGAGCAAG-GGCTGATTTCCTATTCCCAAGG-GTATACGGGGGTGAGGAAAGTCCAGGTACAAACCAATGTCAGAATGATGCTGTCA-------GTCTCCATCAGCAGAGCAAAGGGATGTTTGGCCTTACAGGAACTGACAGGGGCTTGAGCCTGATTTTCTCTGAATTAGCCCCATTAAAGCTCTATAATTATCGACAAGCGAGTGACAACTCTCACCGGCCCATTAGTGACCAACCCTCATTATTTTTCCAAGGTTGTAAACTTTAGCCAGGGCATGTGACTTCAGT-GGGTGGAGGGCAGGAT---------GCAGTGGCTCACACAGATAAGCACCTTCCCCTACCCTTAGGACCCTCCTTATCTGTACCAGAAGCCCACAGCTCCCTTTCCAGCTCAG--AGGCCCCTCTAGGACGGTGGCCCAGCCCTCC a score=19243.0 s hg17.chr17_random 177354 92 + 2618010 CTCTCCTTCC-------CCTAGAGCAACTCTGCTTTTCTCTCTTTTTGTTTCT-----------TAGTTGCATCCTCCTAAGATTTCAGCTAAACA-AAGTGGCCAAAAAA--- s panTro1.chr19_random 7704928 92 - 57627672 CTCTCCTTCC-------CCTAGAGCAACTCTGCTTTTCTCTCTTTTTGTTTCT-----------TAGTTGCATCCTCCTAAGATTTCAGCTAAACA-AAGTGGCCAAAAAA--- s rn3.chr10 47583736 109 - 110733352 CTCTTCTTCCTCTTCTTCCTCTTCCTCCTCCTCTTCTTCCTTTCTTTGTTTCTTTCTTTCTTCCTAGCTGCATTTTC--AGGACTTGAGTTACACACAAATTGGGGAAGAA--- s canFam1.chr9 38056383 90 + 53642819 ---CTTGTCC-------CTGTCAGCAACTCTGCTTTTCTCTCTC--TGGTTCT-----------CTGTTGCATCATCCTGAGATTTCAGCTACACA-AAGTAGCAGACAAAAAA a score=2018.0 s hg17.chr17_random 177446 12 + 2618010 AAGCTTTTTGGA s panTro1.chr19_random 7705020 12 - 57627672 AAGCTTTTTGGA s rn3.chr10 47583845 12 - 110733352 AACCCTTCAGGA a score=28964.0 s hg17.chr17_random 177458 324 + 2618010 CCAgggcagagtggcccgtgtgtgcctgtaatcccagcactttgggaggtgaaggcgggaggattgcttgancccgggagttcaagaccagcctgagcaacgtagtgagacctacccccccgca---ccccccgcaccaacaccactgtctctttttttgtaaatatattttttaagttagccgggcatggtggtgggcgcctgtagtcccagctacttgggaggctgaggtgagaggatcgtttgagcctgggaggctgaactgtgatcgcaccactgtactccagcctgggtaacagaacaagaccctgtctc------aaaaaaaaaaaa s panTro1.chr19_random 7705032 333 - 57627672 CCAGGGCAGAGTGGCCCGTGTGTgcctgtaatcccagcactttgggaggtgaaggcgggaggattgcttgagcccgggagttcaagaccagcctgagcaacgtagtgagacctaccccccggcacccccccccccaccaacaccactgtctctttttttgtaaatatattttttaaattagccgggcatggtggtgggtgcctgtagtcccagctacttgggaggctgaggtgagaggatcatttgagcctgggaggctgaactgtgatcgcaccactgtactccagcctgggtaacagaacaagaccctgtctcaaaaaaaaaaaaaaaaaa a score=758.0 s hg17.chr17_random 177782 6 + 2618010 CTTCTT s panTro1.chr19_random 7705365 6 - 57627672 CTTCTT s mm5.chr11 46245512 6 - 121648857 CTTTCA a score=-753.0 s hg17.chr17_random 177788 3 + 2618010 --ggg s panTro1.chr19_random 7705371 3 - 57627672 --GGG s mm5.chr11 46245518 3 - 121648857 --GGG s canFam1.chr9 38056888 3 + 53642819 CCA-- a score=13350.0 s hg17.chr17_random 177791 21 + 2618010 agccagtaggctttaagggag s panTro1.chr19_random 7705374 21 - 57627672 AGCCAGTAGGCTTTAAGGgag s mm5.chr11 46245521 21 - 121648857 AGCCACTAGGCTTTAAGACAG s rn3.chr10 47583857 19 - 110733352 AGCCACTAGGCTTTAAGAC-- s canFam1.chr9 38056891 21 + 53642819 AGCCAGTAGGCTTTAAGAAAA a score=91709.0 s hg17.chr17_random 177812 280 + 2618010 aaactatcaggatggaagtgaag--------------------------------------aggcctagattctgtgcctgggtctgctgggccacgctgagcagctcccctcccctctctgagcctcatttctctaaa-gggaaatga--agagtttgggccatgtgctccgtaagagagcttcac--------cagcctctgaAAACTGTGACCGAGCTTCTATTTATAAACTATC------------------------------ATTTCTTACAGACCTTCCAGTGGAGTTCAAAGAAATTCATCAGTCCCTTCCTGGTGACACACTGGGTGTGCTGTTCCTTCCCAGGAGGTGG- s panTro1.chr19_random 7705395 279 - 57627672 aaactatcaggatggaagtgaag--------------------------------------aggcctagattctgtgcctgggtctgctgggccacgctgagcaggtcacctcccctctctgagcctcatttctctaaa-gggaaatga--agagtttgggccatgtgctccgtaagAGAGCTTCAC--------CAGCCTCTCAAAATTGTGACCGAGCTTCTATTTATAAACTATC------------------------------ATTTCTTACAGACCTTCCAGTGGAGTTCAAAGAAATTCATCAGTCCCTTCCTAA-GACACACTGGGTGTGCTGTTCCTTCCCAGGAGGTGG- s mm5.chr11 46245695 321 - 121648857 AAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGACAGGGCTTTAACTCCAGCCCTTCAGGGCCAC-CTCACTTGGCTACCTCCCCTCTCTGAGCCTCATTTCTACAAA-TGGAAAGGG-CAAACTTTGGGTCACATGTCCCTTAAGACAGCTCCTCCACACATGCAGTCTCTCCAAATGCTGACCAAGCTATTGGTGACAAGATAAA------------------------------ATTCCTTCTAGGTCTT----TGGTGGTACTAGACATCCGTCAG-CCCTTTCTGGCCACACACTGGGAACACTGTTCCTTCCCAGGTGATGG- s rn3.chr10 47583876 249 - 110733352 -------------------------------------------------------------------------AAACTCCCGCTCTGCAGAGCCACCCTCACTCAGCTACCTCCCCACTCTGAGCCTCATTTCTACAAA-TGGAAAAGGGCAAACTTTGGATCACCCACCCCTTAAGACAGCTCCTCCACACATGTGGTCTCTCCAAATGGTGACCAAGCTTCTAGGGACAAGACAGA------------------------------ATTTCTTCTAGGACTT----TGGTG-TACTAGACATTCATCAG-TCCTTTCTGGCCACACACTGGGCACACTGTTCTTTCCCCGGGGGTGG- s canFam1.chr9 38056912 312 + 53642819 GAACTGTCATGAtggaaatgaag--------------------------------------aggtctggattctgtgtctagttctgctgggccaccctgaccaggtcaccaacgctctctgagcctcatttctctgaatgggaaatga--agacttcggactgtaagatccctaagAGAGCTCCACCATCAGC-AAATCTCTAAAAATTGTGACCATACTTCTATTTATAAACTATAATAAACTATTATAAACATTTATAAACCATTATTTCTTACAAAACCTCCAGTGGCAGTCAAAAGAATTCATCAATCGCATGGAGGGGACCCA--GGGTGTGCTGTTTCT-----GGGAATTGA a score=12876.0 s hg17.chr17_random 178092 245 + 2618010 TGACGGGTGTCAGTTTTCCCCCCAGGCAGTTGGAGAAGATCGCTGCCCTCCTTGGACAGGGGTTTCTGTAGAGCCAGTGCAGGGGCTTC------------TCCCCTCCAGGAGCTGGGTGTCCCAG-GGGGAGCAGGCAGCCGCTCTGTCT-TCTGGCTGTCCTTCTCTGGGGTTGGGAAACAGGCAGAAATCA--GAATGTGCATTTTTACACTTGGGTGTCACACCAGATCCCAGCTCCTGGG-AGCACCTGGAGGGCA s mm5.chr11 46246016 145 - 121648857 TAACAGATGTTAGTGTTTC-----------------------------------------------------------------------------------------------------------------AAGAGGCAGCCCCCGTGTTC-CCTGTC--TTGTCCTCTGGGGTTGGGACACAAGCAGACAACATGGAGTATGTGCTGTTATATGTGGA-ATCACACCAAATCCCTCCTCCTGGGAAGTAGCTGGACTGCA s rn3.chr10 47584125 146 - 110733352 CAACAGGTGTTAGTGTTTC-----------------AGGAGACAGCCCT-----------------------------------------------------------------------------------------------CCATGTTC-CCTGTC--TCGTCCTCTGGAGTTGGGACACAAGTAGACATCGTGGGGTGTGTGCTGTTGCACATGGA-ACCACACCAAATCCCTCCTCTGGGAAGTTGGCTGAACCTCA s canFam1.chr9 38057224 242 + 53642819 TCATACGTGTCGCTTTCAC----------------TGAGTGTCAGCCCTCCTTAAACAGAGATGTCTGCAGAGCCAGCAAGGGGGCTCCTTTCTTCTCCTTTCTTCTCCGGGACCTGAGATTCCCAGTGTGGAGCAGGTGGCCCCAATGTCTGTCTGGCTGGCCTCCTCTGAGAGTGGGAAATGGGCA-AGATTGCGGAGTGTGCATCTTAACTCGTGGGCAT--CACCAAATCCCTGCTCCTGTG-AACAGCTGGAGAGCA a score=62812.0 s hg17.chr17_random 178337 204 + 2618010 AGTTGGTTTGAATGGACCAGCCATGTGTGTCTG--CATCTGCTGTTTGTTGGTCTCACAG------GTGTGGC-CAAGGCATGGTCCCTGTGCTCAGGGGGCTAATTCGTTGGGGGAACAAACCCCAGGTAGGCCTGACCTGAACAGCAGATCCATTTACTATCATGTAAAGCCAACAGCTTCAGAGAATATTGTTACAAAAGTACAGATTGG- s panTro1.chr19 82382074 204 - 82489036 AGTTGGTTTGAATGGACCAGCCATGTGTGTCTG--CATCTGCTGTTTGTTGGTCTCACAG------GTGTGGC-CAAGGCATGGTCCCTGTGCTCAGGGGGCTAATTCGTTGGGGGAACAAACCCCAGGTAGGCCTGACCTGAACAGCAGATCCATTTACTATCATGTAAAGCCAACAGCTTCAGAGAATATTGTTACAAAAGTACAGATTGG- s mm5.chr11 46246161 201 - 121648857 ATGCCATTCGAACAGCTCCACCATG-ACCACTGACCATCTGCTGCTTGCTGGTCCCCCCACCCTCCGGGTACC-TGAGGCAGCATCCA-ACCCTCACAGGGTGAGGTCTTCAGGGAG--------CTGGTA-GCCTTAGCTGGACATCATGGAAACTGATTATAATGCAAAGCCATCACCTCTGCAGAATGATGTTGCAGAAGCCCAGCTGGG- s rn3.chr10 47584271 193 - 110733352 AAGCCATTTGAATGACTCCACCATG-AGCACTAACCATCTGCTGCTTGCTGGTCCCCT--------GGGTACC-TGAGGCAGCATCCT-GCCCTCATAGGGTGAGGTCTTCAGGGTG--------CAGGTA-GCCTGAGCTGGACATCATGCAAACTGATTATAATGCAAAGCCATCACCTCTGCAGAATGATGTTGCAGAAGCCCAGCTGGG- s canFam1.chr9 38057466 202 + 53642819 AATTGGGTCGAATGGCCTGGCTGTG-CAGATCGAACGTCTTCT--TTGCCAGTGTCGCTG------GTGTGGCTCGAGGCATGGTCGCTCCTCTCTGGAGGCTGATGTCTTGAGAGAACAAGCCATGGGTAGGCCTGAACTGAGCAGCAGACTAATTTACTATCACATAAAGCCAACAGCTTTGGAGAATA---TTAGAAAAGCGTGGACCTGG a score=504.0 s hg17.chr17_random 178541 2 + 2618010 TG s panTro1.chr19 82382278 2 - 82489036 TG s mm5.chr11 46246362 2 - 121648857 TG s canFam1.chr9 38057668 2 + 53642819 AG a score=7517.0 s hg17.chr17_random 178543 48 + 2618010 CATCTCGGG-CTGTGGCTGTGTTCATTGCTGCAGGAGCAGTGGGATACA s panTro1.chr19 82382280 48 - 82489036 CATCTTGGG-CTGTGGCTGTGTTCATTGCTGCAGGAGCAGTGGGATATA s canFam1.chr9 38057670 49 + 53642819 AATCTTGGGACCATGGCTGTGGTTGTCGTTATAGGCATGGTGTTATATA a score=16606.0 s hg17.chr17_random 178591 123 + 2618010 CCTCCCTTCC--AGCAGCCTCACCTGCCTGGTGTGGAGATGGCAGCTAGCATGCAGGCAGCTGAAGGCCAGCTACAGCTATTGCTGCTGCACACATACCCTGCTCAGGAGAACGTGCCTCAGGCT s panTro1.chr19 82382328 123 - 82489036 CCTCCCTTCC--AGCAGCCTCACCTGCCTGGTGTGGAGATGGCAGCTAGCATGCAGGCAGCTGAAGGCCAGCTACAGCTATTGCTGCTGCACACATACCCTGCTCAGGAGAACGTGCCTCAGGCT s rn3.chr10 47585339 123 - 110733352 CTTCTCATCCATAGCATCCTCACCTGCACACCTTTCGGAAGGGGGAAAGGATAC-TGCAGCAAAGAACCCAGTGTGGTCATCACTAATGCATGCATTTCTCACT-AGGGGATGATACTTGCAGCT s canFam1.chr9 38057719 97 + 53642819 CCTCACTTCC--AG--------CCTGCAT-------AGATGGGAGTCCGGAAAC----------CGGCCAGATACAGCGAGCGCCAAAGCACCCTAACTCTACTTAGGAAAA-GCACGATAGGCT a score=39118.0 s hg17.chr17_random 178714 434 + 2618010 TCACTCAAGACCTAGTAtttatttatttttttgagacaggatctcgctctgtcgcctaggttggatgcagtggcacaatcacactcactgtagcctcaacttcctgggctcaagcggtcctcccacctcagcctcccgagtagctgggaccacaggcatgcgccaccatgcccggctatttttgtattttttgtagaaatgggtgtttccatgttggccaggccggtcttgaaatcctgggctcaagtgatccacccgtctcagcctcccaaanngtngncntnnggattataggcgtgagccaccacacccggccatttttgtagtttttgttgccatgttggccaggctggtctcgaactcctgagctcaagtgatccatctgcttcggcctcccaaactgctgggatgacaggcatgagccccacaccAGC s panTro1.chr19 82382451 428 - 82489036 TCACTCAAGACCTAGTAtttatttatttttttgagacaggatctcgctctgtcgcccaggttggatgcagtggcacaatcacactcactgtagcctcaacttcctgggctcaagtggtcctcccacctcagcctcccgagtagctgggaccacaggcatgcgccaccatgcccggctatttttgtattttttgtagaaatgggtgtttccatgttggccaggccggtcttgaaatcctgggctcaagtgatccacccgcctcagcctcccaaagtgctg------ggattataggcgtgagccaccacacccggccatttttgtagtttttgttgccatgttggccaggctggtctcgaactcctgagctcaagtgatccatctgcttcggcctcccaaactgctgggatgacaggcatgagcaccacaccAGC a score=100.0 s hg17.chr17_random 179147 1 + 2618010 C s canFam1.chr9 38057816 1 + 53642819 C a score=34754.0 s hg17.chr17_random 179148 183 + 2618010 CACTCAAGGCCTGTTGGCTCTTAGTTTGCACACACTTCCAACAAGTATCATCACCTGGTCTCATGGGAGAAACAA---TTATTGAATAGG--TGAGAGCTGTCTGCGCCAACACAGACAAGTAATCTAATAGGAGTTTCAGGCTGATGTCAAAGGAAGAGGCAGAAAAATGAAGAAAACCGAAAAGAG s panTro1.chr19 82382879 183 - 82489036 CACTCAAGGCCTGTTGGCTCTTAGTTTGCACACACTTCCAACAAGTATCATCACCTGGTCTCATGGGAGAAACAA---TTATTGAATAGG--TGAGAGCTGTTTGCGCCAACACAGACAAGTAATCTAATAGGAGTTTCAGGCTGATGTCAAAGGAAGAGGCAGAAAAATGAAGAAAACCGAAAAGAG s rn3.chr10 47585462 87 - 110733352 CACTGCAGGCTTGTTGA--CTTAGTCTGAACCCGGTTCTAACAAGT---ATTACCTGGT-TTGTGGGAGAA-----------------------AGAGCTGTTTGTGCTTCCGGAG------------------------------------------------------------------------ s canFam1.chr9 38057817 188 + 53642819 TGCTCAAGGCCTACTGACTCATAGTTTGGACACAATTCTAGCAGGTGTTCGCACCTGGTTTGGTAGGAGGAACAAGTGCTATGGAAAAGGAAGGAGGGCCGTTTGTGCTATCAGAGGCAAGTATTCTAAGAGGAGTTTCAGGCTGTTGGCAAAGGGGGAGGCAGAAAAATGAAGAAAACCTAGGAAAA a score=0.0 s hg17.chr17_random 179331 15 + 2618010 GGCCACCCGGGACCC a score=891.0 s hg17.chr17_random 179331 9 + 2618010 GGCCACCCG s panTro1.chr19 82383062 9 - 82489036 GGCCACCCG a score=2511.0 s hg17.chr17_random 179340 6 + 2618010 GGACCC s panTro1.chr19 82383071 6 - 82489036 GGACCC s mm5.chr11 46246862 6 - 121648857 GGAACC s rn3.chr10 47585549 6 - 110733352 GAACCC a score=297773.0 s hg17.chr17_random 179346 1711 + 2618010 TCTGGTGCAGGGGTTGCTTCGTGTCCCCTTTTGCCTCTGGAACATGACCGTGACATACGGAAGAGTCATCGTGGCCATAGCAATGACTCAGGTTATTCA-AAAAATTTAAGTGACTATTTGTATGTTCTGTTCCCAAAGGCAGGGAGGGAAATGAGCCAATTGAGGACAGTTTCATTCCAGAATGGGTCTTAGAGAAGCCAGTACTGTTAGCTAGAAAACCCA--CCATAG------------------------------------------------------------------------------------------------GTatctgctccttctataatgatctactgagcacctcctacaccgcagg---------cacactgtgctgtgaggtggatactatcgttgtctccatttcacagatgagtaaactgaggcataaagacgttagataagct------ggccacacagcagggaagtgc-acgctgggatttgaacc-gaggagactgatgtcagag----ggcaggtcttgcaccccac-actgcTGCGA--------------AGACAGAGACATGTGCCT-----GACCCGTGTTAGAAGGGGATGATCTAGACAAATGCCACTC-CCATCACCAGCTCAGAATAAAGGACACTCCACACTCGTGGCCTTTCATTAGCCAATTTCCCTGCAGACCCAAGAAACTTTGTTATG----CCTGGGCCCAGCACTCGC-----Ccagagatctgcaaacttgttctataaagaagggctggatagtaaatattttcagctgt-gcaggccgtagggtctgcttctgaagtaggaaagcagccgcagaagagatgtaaatgatgggcctggTCAGGTGTGGCCGTAATTGGATCTAGATCCAGGTTGGGAGC--CTAGCTCAGAGCC-TGAAGAACACAGTCTTTCAAGTTTGGCCTTCCCTTATCccgggatcacaccagccactaagcccgtacctgctngngttggcctgtggttggaatcgtcacctcccccagcccctctttgccattggccaactcctactc----atccctcatggctcag-gtgaagcatcacctcctccaggaagccnttccctggtggtcccaattcaca-------------------tgggctccccatggctcccggctcaccagactctactgcggcaaattatttccatttgttcctccccttaagctgtgctttccttgggatagggactctgcctcacagatgtccat-cccctagagtctggcatg----ttgta--aacacttggtaaataatgaaggaatG----------TGA--------------CACCATTTGACCAGCCCTGCAGCCTGGGAGCAGGCTCTGGGCTTCTGAAGCCATCTGTGAATGTGCATCTTGCTGTCTGCGGACTG--CCACTAAGCTCTGCCCCCCACCATCATCTCCAAGCTCTGCCCCAACCATCACCTTGGCCTCCATGCTGGGAGCCGCTTCTGCATGGAAAGCCACAGCTGCTATGAGTGATTGCCCCCGGGGAGGGAGGCAGCTGCACCCAATTATGGCTGCAACCTCCCCCNAANTTATGGCTGCACCCT-CCCCCCGGCTTTTGGGAGTTA-CCACTGCCATTGAGAGACTTGGGGGCAGCAGTATGAGGACCCAGCTGGCTCCTCACGGCCTGCTCGGGGTTCCCAACGGGCCAGAGAGACAGAGGAGCTGCAGTCCTGTGTGTTGGCTGGGGGACTGTTGAGCAAATCAGCTGATCTTCCTGGCCAGGACCTGTT-CCTCTCAAAGCCTCGTCTCCTCCGCCTTGTGTGATCCT--TGTGAcatttcacaggtgagggaa--------actgaggcacggggCCCAGA------CTGG----CAGTTGCACCA s panTro1.chr19 82383077 1709 - 82489036 TCTGGTGCAGGGGTTGCTTCGTGTCCCCTTTTGCCTCTGGACCATGACCGTGACATACGGAAGAGTCATCGTGGCCATAGCAATGACTCAGGTTATTCAGAAAAGTTTAAGTGACTATTTGTATGTTCTGTTCCCAAAGGCAGGGAGGGAAATGAGCCAATTGAGGACAGTTTCATTCCAGAATGGGTCTTAGAGAAGCCAGTACTGTTAGCTGGAAAACTCA--CCATAG------------------------------------------------------------------------------------------------GGATCTGCTCCTTCTGTAATGATCTACTGAGCACCTCCTACACCGCAGG---------CACACTGTGCGGtgaggtggatactatcgttgtctccatttcacagatgagtaaactgaggcataaagacgttagataagct------ggccacacagcagggaagtgc-acgctgggatttgaacc-gaggagactgatgtcagag----GGCAGGTCTTGCACCCCAC-ACTGCTGCGA--------------AGACAGAGACATGTGCCT-----GACCCGTGTTAGAAGGGGATAATCTAGACAAATGCCACTC-CCATCACCAGCTCAGAATAAAGGACACTCCACACTCGTGGGCTTTCATTAGCCAATTTCCCTGCAGACCCAAGAAACTTTGTTATG----CCTGGGCCCAGCACTCGC-----Ccagagatctgcaaacttgttctataaagaagggctggatagtaaatattttcagctgt-gcaggccgtagggtctgcttctgaagtaggaaagcagccgcagacgagatgttaatgatgggcctggTCAGGTGTGGCCGTAATTGGATCTAGATCCATGTTGGGAGC--CTAGCTCAGAGCC-TGAAGAACACAGTCTTTCAAGTTTGGCCTTCCCTTATCCCCGGATCACAccagccactaagcccgcacctgct--ggttggcctgtggttggaatcgtcacctcccccagcccctctttgccattggccaactcctactc----atccctcatggctcag-gtgaagcatcacctcctccaggaagcc-ttccctggtggtcccaattcaca-------------------tgggctccccatggctcccggctcaccagactctactgcggcaaattatttccatttgtttctccccttaggctgtgctttccttcgggtagggactctgcctcacagatgtccat-cccctagagtctggcatg----ttgta--aacacatggtaaataatgaaggaatG----------TGA-------------TCACCATTTGACCAGCCCTGCAGCCTGGGAGCAGGCTCTGGGCTTCTGAAGCCATCTGTGAATATGCATCTTGCTGTCTGCGGACTG--CCCCCAAGCTCTGCCCCCCACCATCATCTCCAAGCTCTGCCCCCACCATCACCTCGGCCTTCATGCTGGGAGCCGCTTCTGCATGGAAAGCCACAGCTGCTATGAGTGATTGCCCCCGGGGAGGGAGGCAGCTGCACCCAATTATGGCTGCAACCTCCCCC--AATTATGGCTGCACCCTCCCCCCCGGCTTTTGGGAGTTA-CCACTGCCATTGAGAGACTTGGGGGCAGCAGTATGAGGACCCAGCTGGCTCCTCACGGCCTGCTCGGGGTTCCCAACGGGCCAGAGAGACAGAGGAGCTGCAGTCTTGTGTGTTGGCTGGGGGACTGTTGAGCAAATCAGCTGATCTTCCTGGCCAGGGCCTGTC-CCTCTCAAAGCCTGGTCTCCTCCGCCTTGTGTGATCCT--TGTGACATTTCACAGGTGAGGGAA--------ACTGAGGCACGGGGCCCAGA------CTGG----CAGTTGCACCA s mm5.chr11 46246868 1223 - 121648857 CCCAGTGGAGCAATCACCTCACAT-CTCTTCTGTCT---GGCTGTGACTGTGACCCACCGAAGAATCGTGGTAGTCATAGCTATGACT--------------------------CTGCTTATGTGTCAAGTTTGCAAAGGCAGGGAGAG-GGTGATCAAGCTTAAGGCAGTCCC-TTCCAGGA-AGTCCTTAGAAGGGC-----------------AAACTCAGCGCACAA------------------------------------------------------------------------------------------------GAACCATGTCC---------------CTGAGGAACCCC------------------------ATGTGCTGGGAGGTAG---TTATAGTTATCTCCGGTT-ACAGATGGGGAAACTGAGGTGAA------------------------GTCATGCAACAAGAACATGCTGAGCTGGGATTTGAACCTGTGGAGTGCAACAACAAAT----GTTATTCTCCACACTCACA-ACTGCCCCCC--------------AGAAAGAGACAAAAACAC------CCCCCTGTTGGGATGGGGGAACCCAACCCGTTTCCACAT-GTCT------CTCAGAACAAAGAGCACAGCG-------------------------TTTGCTGTACACAGAAGA----CTGTTAGG----ATGCGGCCCTGCCTTTGT--------------------------------------------TAGTA----------------------------------------------AAGGCAGGCACA---------------------------------------------------------GCTTGGAGT--CCAGCACAGAACCTTGATGGGGACAGAGGCTCAGCCCAGCCCGTCACCCATCCCAGCACCCCTTCAGCCATCGTTCCCCCATCA-----CAGACGCCTGTGGTT---ATGATGTCCCCTCTGAGACCCTC-ATACCATTGGCCAACTACTATCT----GTCGAT------------------------TCCTCCAAGAAGCC-TCCCCTGATAG-CTCAATTCACA-------------------CTGAGGCCCAGAGAC------------------------------------------------CCTCTTGAA----GCTCTCCT--------GGCTCTTGGCTCAC---------------------CAGGCA-----------------------------------AATG----------TGA--------------GACC---TGATCA--------------------------GAATGTTAAAGATATTAAAGAATGTGTCCCTTGCTGTCTGGGGACT-------------------------------TCAGAGGTCTTCCTTGCTCACACCCTGGCTCTTTTCCTTAGGAACCCTCGGGACATGGCAGGACACAGCTGTAGCAAGTGACGTTCCT-----AAGGTGGCAGCTGAACCC------------------------AATTATTGCTGTGTCCT-CTGCCTGGCCCTCGGGACTTA-CCAATGCCTTTGA-AGACTTGGAGGCAGCAGCATGAGGACCCAGCTGGCTTGTCACTGCCCGCTTACGATCTCTAA-GGGCCCTGGAGACTAGGGAGCTGTGGTGTCCCTTGTCACCTGGGGGCTCAATCAAC-AGTCAGCCACTCAGGCTGGTCAGGTCCTGTAGCCTCTCAGAGCCTG---TCCTCTGCCTTCTCACACCATTATGTGTCATTGCCTGGGGGAGGGGAGAGGGGGCACTGAAGCAAGGGTACCGAAAGCTGTCTGGTACACAATAGCACCA s rn3.chr10 47585555 1347 - 110733352 CCCAATAGAGCAGTCACCTCACAC-CTCTTCTGTCT---GGTGGTGACTGTGACCCACAGCAGAATCACTGTAGTCATAGCTATGATT--------------------------CTGATGGTATATCGTGTTTCCAAAGACAGGGAGAG-GGTGATCAAGCTTAAGGCAGTCCT-CTCTAGGA-AGCCCTTAGAAGGGCAAACTTAGCGCTCTAGAACCATCA--TCAAAGTGTGTCTACAGTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAAGTGTGTCTACTGTTCCTATAG---------------CTCCTGGA---GGAG---------CCCCATGTGCTTGGAGGTAG---ATATAGTTATCACTGGGTTGCAGGTGGGGAAACTGAGGTGAA------------------------GTCATGCAACAAGAATGTGCTGAGCTGGGATTTGAACCTGTGGAGTGCAACAGCAGAT----GTCATTCCACACACTCAACAATTGCCCTGC--------------AGAAGGAGGCAAAGACAC------CACCCTGTTGGGATGGGGGAACTTGACACATTTCCACAT-GTCT------CTCAGAACAAAGAGCACAGCT-----------ATTGATGTACCCA-CTCCCTCCAGACACAGAAGG--CTGTTATG----ATGTGGCCCTGCCTTCGT--------------------------------------------TAGTA----------------------------------------------AATGCAGACACA---------------------------------------------------------ACTTGGAGT--CTAGAGCAGAACCCTGATGAGGACAGT------------------ACCCCTCCCAGTACCCCTTCAGCCATCAG--CTCCATCA-----CAGATGCCTGTGGTT---ATGATGTCCCCTCTGAGTCCCTC-GTACCATTGGCCAACTACTACCTGTTGGTCCCTCTTGTCCCAACAAGGGACATCGAATCCTCCAAGATGCC-TCCCCT---------AATTCACA-------------------CTGAGGCC---------------------------------------------------------------------------------TAGAGACCCT---------------------CTTGAAGCTGTCATGGCTCTTGC-------CTTGCCAGACA-------AATG----------TGG--------------GACC---TGACCAGCAGT------TGGGAGCAAA-TCAGGGATTTT-AAGATACTGAAGAATGTGTATCTTGCTGTCTGGGAACT-------------------------------TCAGAGGTCTCCCTTGCTCACACCCT-GCCTCTCTTCCTAGGA----------CACAGCAGGCCACAGCTGTAGCAAGAGACTGTTCCT----AAGGTGGCAGCTGAACCCAAT------------------------TATTGCTGTGTCCT-CTGCCTGGCCCTTGGGACTTA-TTGATGCCTTTGA-AGACTTGGAGGC------ATGAGGACCCAGCTGGCTTGTCACTGCCCGCTT-TGATCTCTGA-GGGCCCAGGAGACTAGGGAGCTGCGGTGTCACTTGTCACCTGGGGGCTCAATCAAC-AGTCAGTCACTCAGGCTGGT-----CCTGCAGCCTCTCAGAGCCTG---TCCTCTGCCTTGTCATATCAC--TGTGTCATTGCTTGTGTGGGGGA---------ACTGAGGCAAGGGTACCCAA-GCTGTCTGGTATACAATAGCACCA s canFam1.chr9 38058005 1658 + 53642819 CCTCAAAGAGTGGCTGCTGGGGAT-CACTTCATCCA---GGCTGCAACCACAACGCATGGAATGGGAGTTGTAGTCACAGCGATGACTCAGGTCATTCAGAAGAGTGTAAGTGACCACTTGTGTACTGTCTTCACAAAGGCTGGGAGGGGAGTGATCCAGTTTGGAACGAGTTCATTCCAGCAGGCGTCTCAGAGGGGCAAGTACATTTATCCAGAAAAATAA--CCTAAG-----------------------------------------------------------------------------------------------TGGATCTGCTCCTTTTATAATTACGTACTGAGCATTTTCTGTACCCCAGGGGCTGTCAAAGCacagtgctgtgaactggatactattg-cgtctccattttgcagatgaggaaactgaga-acaaggaggctagaaaagctagctaaagtcaaacagcaaggaagcatagagccaggacttgaacc--cagggtcaggtgtcagagGTGCGGCGGATCTTGTACCCCACTTGTGCCCCTCCTGGGCAAGGGCAGAGACTGAGCCGAGTGCCTTCCTTACCCTGTCTTAGAAGCTAGAGAGCAAGACAAATGCAACCTAGTACCATGACCTCAGAATAAGGGAGGCTCCA----CATGGGCCTTAATTTGCCTGTTTCTCTGCAAAGCCAA---ATTTTGCCATACTGTCCGCACCCCCACCCCCACGACGCCCCGAGGTC-----------------------AGGCGTATGGCA--TCTACTCAGCTGTGGCA-----------------TTGTAGTGCAAAAGCAGC--------AGATACATGAGATGAGCATATCCAGGCTCAGCA-----TGAATCTAGAACCGCGTTAGGTGCTGCTGG-------CC-TGGAGAGCCTCGC------------------CCTTCCCTcagcctcacctcagcggctcagcctctcacctcc--agttggcctgcgattggaat-gccctttctccccgcaccactgtg-cactggccaactcctactc----atctttcgtggctctg-gtgaagcgtcacctcctctagggatcc-ttccctggtggcccccattcacagccaggcaaggcataccccttgaactcctattgctcctggctcaccagactctgctagggcagattcttttcatcagtgtctcccattaagttatgctttccttggggcaggaaccccgccttattgatattttcatccctagaggccagcTTA----TTGTAATAAAGCTTGGgaatggatgaatgaatgaatgaatgaatgaacgaacgaaCAGGTTGCCAGTTGACCAGCCCAGCAGTCTGTGTGCAGGATCGGGGTTTCTAAAGACATCTGTCAATGTGCATCTTGCTGTCTAGAGATTTGCCCCCTGAGGTCTGCTGTCC--------------------CCCAACCCACAACCCCCACCTTCACGCCATGAGCCACGTGAGCACAACGAGCCACAGCTGCCACGCGTGATTGTCCCTG---ATGGCTATGGCTG----------------------CACCT--AGTTATCGCTGCCCGCT-CTGCCCGCCCCTAGGGACTCACCCACTGCCTTGAAGAGGCTGGCAGGTTGTAGCGTGAGGACCCAGCTGGCTTCTGGCAGCCTGCCCAGGGCCCCCCAAGGGATGGAGAGACTGGGGAGCTGCAGCGCTAAGTGTTGTTGGGGGTG----------GATCAGCCTGTCAGCCCAGCCAGGGCCCAGAGGTTCTCAAGGCCCTGT-CCTGCCTCCCTATACAATCCT--TGTGACAGTTAAC-CATCAGGGAA--------ACCGAGGCATGGCGCCAAGA------CTGG----CAGTTGCATGA a score=4116.0 s hg17.chr17_random 181057 39 + 2618010 --------GGAGGGCAGGAACTCCTTTGG----------CTGGGTGCCCAGCTCAGG s panTro1.chr19 82384786 39 - 82489036 --------GGAGGGCAGGAACTGCTTTGG----------CTGGGTGCCCAGCTCAGG s mm5.chr11 46248093 46 - 121648857 --------GTGGGACAGGACAGACAGTGAGAAGGAAGGTTTGAGAGCCCCTTTC--- s canFam1.chr9 38059663 45 + 53642819 AGAGGGCAGGAGGACAGGGAC--CTTTGG----------CTGAGTGCCCTGTATGAT a score=26899.0 s hg17.chr17_random 181096 153 + 2618010 TGGACCACACACTGGG--------------CCA--GACAGGgaactgga--------------------------------------------------gtgacccacctgacctctctgggtctcagctcctcc----tctggaaagtggggagattattgtgacttcccagggttgGGTGGGACTGGGAGGATGGGTG-AGGGGCTGGCATAGAGCAGGTGC s panTro1.chr19 82384825 153 - 82489036 TGGGCCACACACTGGG--------------CCA--GACAGGgaactgga--------------------------------------------------gtgacccacctgacctctctgggtcccagctcctcc----tctggaaagtggggagattattgtgacttcccagggttgGGTGGGACTGGGAGGATGGGTGAAGGGGCTGGCATAGAGCAGGTG- s mm5.chr11 46248139 158 - 121648857 TGGGCCACCTACCTGGTTAAGATAAGGTTACCA--CATATGGGACTTAA--------------------------------------------------GTAATGCACCCAGAACCTGTGGGC-----CTCCTCA----TCTGGTAGTGACAGGAACCATC----CCTCCCAGGGTTGTGTGTTTCAGTGGGAGAGAGAA-AGAGACTGCCACACTGTAGCTGC s rn3.chr10 47586950 158 - 110733352 TGGGCCACCTACCTGGTTATGATCAGGTTACCT--CGTAGGGGATTTAG--------------------------------------------------GTGATCCACCCAGAATCTGAGAAC-----CTCCTCA----TCTGGTAGTGACAGGAACTGTC----CCTCCCAGGGTTGAGTGTTTCAGTGGGAGGGATAA-GGAGGCTGCCACATTGTAGTTGC s canFam1.chr9 38059708 187 + 53642819 TGCACAACATG--GGA--------------CCAGCCACAGGGGCCTGGGCTGTGGGGCCTACTGCCTGGGTTTGACTTGGGCCACCACCTGTGGTGACTGGGGCCGACCTAACCTCACTGAGCCTCCACTCCTCCCGCATCTGGAA-------------------CCTGGCTGTGCTG-GTAGCACTGGGAGGCTGGGCG-GAGGGATTGCACCCAGTAGGTGC a score=0.0 s hg17.chr17_random 181249 2 + 2618010 NT a score=61.0 s hg17.chr17_random 181249 2 + 2618010 NT s panTro1.chr19 82384978 1 - 82489036 -T a score=6559.0 s hg17.chr17_random 181251 56 + 2618010 TNGGTTGGTGGCAGCCGCCATGGAACGGTGGCACC-TGCCCAGGCCAGGCTCATCTG s panTro1.chr19 82384979 56 - 82489036 TTGGTTGGTGGCAGCCGCCATGGAACGGTGGCACC-TGCCCAGGCCAGGCTCATCTG s canFam1.chr9 38059895 42 + 53642819 TCAATTGATGGCAGTCACTGTGGCAATGTGGCACCTTGTCCC--------------- a score=6634.0 s hg17.chr17_random 181307 27 + 2618010 GTCTCACAGGGGCAGGCGAAGCCTCTC s panTro1.chr19 82385035 27 - 82489036 GTCTCACAGGGGCAGGCGAAGCCTCTC s rn3.chr10 47588656 27 - 110733352 GCCACACAGGGGAGTATCACGTCTCCC s canFam1.chr9 38059937 27 + 53642819 ACCGCACAGGGGTGGGTGTCTCTCCTC a score=308.0 s hg17.chr17_random 181334 4 + 2618010 CAAG s panTro1.chr19 82385062 4 - 82489036 CAAG s canFam1.chr9 38059964 4 + 53642819 CACT a score=-37.0 s hg17.chr17_random 181334 4 + 2618010 CAAG s canFam1.chr9 38059964 4 + 53642819 CACT a score=9385.0 s hg17.chr17_random 181338 23 + 2618010 ATGCGGCCAGGGTGGGACCTGTG s panTro1.chr19 82385066 23 - 82489036 ATGCGGCCAGAGTGGGACCTGTG s mm5.chr11 46250089 23 - 121648857 ATGCAGCCAGCGTGTGACCCCTC s rn3.chr10 47588683 22 - 110733352 ACACGGTCAGCGTGTGACCCAC- s canFam1.chr9 38059968 23 + 53642819 GTGTGGCCAGAGCATGACCTGAG a score=-2211.0 s hg17.chr17_random 181361 3 + 2618010 C-CC s panTro1.chr19 82385089 3 - 82489036 C-CC s mm5.chr11 46250112 4 - 121648857 CTCC s rn3.chr10 47588705 2 - 110733352 --CC s canFam1.chr9 38059991 1 + 53642819 C--- s galGal2.chr19 6606583 3 + 9463882 -CCC a score=2321.0 s hg17.chr17_random 181364 3 + 2618010 TCC s panTro1.chr19 82385092 3 - 82489036 TCC s mm5.chr11 46250116 3 - 121648857 TCC s rn3.chr10 47588707 3 - 110733352 TCC s canFam1.chr9 38059992 2 + 53642819 -CC s galGal2.chr19 6606586 3 + 9463882 ACG s fr1.chrUn 341575435 3 - 349519338 TCT a score=149077.0 s hg17.chr17_random 181367 83 + 2618010 TCTGTC-CGCAGCTGCCCTGGGCACGCTGGACTTCAGCCTGCTGTATGACCAGGAGAACAACGCCCTNCCACTGCACCATCACC s panTro1.chr19 82385095 82 - 82489036 TCTGTC-CGCAGCCGCCCTGCGCACGCTGGACTTCAGCCTGCTGTATGACCAGGAGAAACACGCCC-ATCACTGCACCATCACC s mm5.chr11 46250119 82 - 121648857 TCTTCC-CACAGCCGCCCTGGGTACGCTGGACTTCAGTCTGCTCTATGACCAGGAGAACAACGCAC-TGCACTGCACCATCAGC s rn3.chr10 47588710 82 - 110733352 TTCTCC-CACAGCCGCCCTGGGTACACTGGACTTCAGTCTGCTCTATGACCAGGAGAACAACGCAC-TGCACTGCACCATCAGC s canFam1.chr9 38059994 82 + 53642819 TCTGTC-CGCAGCTGCCCTGGGCACGCTGGATTTCAGCCTGCTCTACGACCAGGAAAACAACGCCC-TCCACTGTACCATCAGC s galGal2.chr19 6606589 83 + 9463882 TCTCTCTCACAGCTGCTCTGGGGACACTGGATTTCAGCTTGCTCTATGACCAAGAGAACAACGCCC-TGCACTGCACCATCAAC s fr1.chrUn 341575438 82 - 349519338 CTCATT-CACAGCCACTCTGGGGACCTTGGACTTCAGTTTGCTGTATGACCAGGAGAACAATGCTC-TGCACTGCACCATTAAC s danRer1.chr5 16583817 82 + 40038624 TCTCCT-CACAGCTACACTCGGCACTCTGGACTTCAGCCTTCTGTACGATCAGGAGAACAATGCCC-TGCACTGCACTATCAAC a score=20350.0 s hg17.chr17_random 181450 19 + 2618010 AAGGCCAAGGTAGGCCC--CG s mm5.chr11 46250201 21 - 121648857 AAGGCCAAGGTAGGCTCTGCG s rn3.chr10 47588792 21 - 110733352 AAAGCCAAGGTAGGCCCTGCA s canFam1.chr9 38060076 20 + 53642819 AAGGCCAAGGTAGGCCCC-CA s galGal2.chr19 6606672 19 + 9463882 AAGGCCAAGGTATGTCT--CG s fr1.chrUn 341575520 20 - 349519338 AAAGCCAAGGTGAGCCGC-CG s danRer1.chr5 16583899 19 + 40038624 AAAGCCAAGGTAAGACC--TG a score=-177.0 s hg17.chr17_random 181469 3 + 2618010 CCA--- s mm5.chr11 46250222 3 - 121648857 CCA--- s rn3.chr10 47588813 3 - 110733352 CCA--- s canFam1.chr9 38060096 3 + 53642819 CCG--- s galGal2.chr19 6606691 3 + 9463882 GCA--- s fr1.chrUn 341575540 6 - 349519338 CCGCCG a score=-5693.0 s hg17.chr17_random 181472 34 + 2618010 ----------GCCT-----GCACCCAAATTCCCTGCCCCGGGGTCCTCA--- s mm5.chr11 46250225 17 - 121648857 ----------GCCT-------------------CAGCTCGGGGTTC------ s rn3.chr10 47588816 17 - 110733352 ----------GCCG-------------------CAGCTCGGGGTTC------ s canFam1.chr9 38060099 36 + 53642819 ----------GCCGCCTCGGTCCCCCGGGTCCAGGGCCTTGGGTGC------ s fr1.chrUn 341575546 34 - 349519338 CCGTGGTTACGCCT-----GCGC----------TGACGCTGGTTCT---CCA a score=1223.0 s hg17.chr17_random 181506 125 + 2618010 AGAGGGCCTAGGTCAGGGAGGCCAGACCACACCACTCCCCAGGTTCCTGTCCAGGCTT-TTGGATGTCTGCGCTGTGTGGGGTGCGGGACCAGGAAGGAATTCTTCTTTAAACCTTCTTGAATACC s mm5.chr11 46250242 75 - 121648857 --AGG---------AAGGAGGCAGGGTCCTGCCCGTCCA------TCTGTCCAGACTTCCCTGGTGTCCCTGCTATATAGAGTGCAG----------------------------------CTGCC s rn3.chr10 47588833 76 - 110733352 --AGG---------AAGCAGACAGGGTCCTGCCCATGTT-----TTCCGTCCAGGTTTCCCTGGGGTCCCTGCTATATGGCGTGCAG----------------------------------CTGTC s canFam1.chr9 38060135 97 + 53642819 --AGGTGAGGGGCTGAGGTCCGAGGGCCTGTCCCCCACACTGTTTCCTGTCCAGGCTC-TGTGGCATCTGCACCAT---GGGTGCAT---------------CTTGCCTAAAT--------CTCCT a score=-26404.0 s hg17.chr17_random 181631 214 + 2618010 CAACCCCAAGAAATGCC----TTGGACAGTCAGGCATT--------GCG-GGGAGCAAAGAAAC-AGATGAGAATGGGAAGATGAAGGCCTGGACCGAGG-----------------ACCCTCGAGC--------------CTGGGG--AGGGGCTGCTGAGAGGGAAAGAGAGGGGCAGGG-TGAT-GTCTGTCCTGC--AGGCCAAGGGAG----GGCGGGTTGGGTACTGGTGCCTCC------------------------AGGCCTCCCAGACGCCCTGA---GGAGTGGG- s mm5.chr11 46250317 200 - 121648857 CACTTCCCAGATTGGCCAGAGTGGGATAGGGTGGGATT--------ACA-GAAAGCCAGGCAGC------------------------------------------------------TTTTGGAGC--------------CT-GGG--AGGGGTCGCTGAGGAAGGGGGAGATATGGAGAA---------TGTCTTGCGGGGGTTGGGGGAGACAAAGGAGGTTGGATTCCACTGTCCCCGGGTCTCTCCAAGTTCCAGCTGCTAGGCTCCCTAGAGTCCCTAA---GAAG----- s rn3.chr10 47588909 195 - 110733352 CACTTCCCAGATTGGCA----TTGCCCAGTAAAGCATT------------TAGATTCGGATGGT----TTAGGATGGGGTCACAGAAAGCCAGGCGGC--------------------TTTTAGGGC--------------CT-GGG--AGGGGTCTCAGAGGAAGGGGGAAGATGGGAGC----------TGTCTTGC---AGTTGGGGGAG-CGAAGGAGGTTGAATTCCACTGTCCCTGGGTCTCCC------------------CGCTCCAAAGTTCC--------AG----- s canFam1.chr9 38060232 232 + 53642819 CAGCTGCCCTAAGAGCC----TCCCGCAGCCAGACATCCAGGGAAGGAG-TAGAAGAAAAAGGCAAGAAGAGAATGAAAGGAGGAAGGCGTGGGGGACAGC----------------AGTGTGGGGC-----AAGAG----CTGGGG--AGGGCCTGTGGCAGGGAGGAGGGAAGGGGAGAGCTGACAGGCTGTCCTGA--TGGCCAGGGGGG----CAGGGGTTGGATT-GGTTGCCTCT-------------------------GGCCTCCTGAAGGTTCCCACCCGGAGTGAG- s danRer1.chrNA 213164602 248 + 390413307 CAAGTCCAGGGAGAGAG----TCGGACCCCTGGGTAGC--------TTGCTGGGGTCAGAGGCCCCTAGGTGGAGGGCAAGAGGGCACCCTGGGGCCTATCCTGCAAGTCCACGGAGAGAGTTGGACCCCTGGATAGCTTTCTGGGGTCAGAGGCCCCTAAGTGGAGGGCCAGGGGGCACCG-TGGG-GCCTATCCTGC--AAGTCCAGGGAG----AGTTG--TGGACCCCTTTGTAGCT--------------------TGCTGGGGT---CAGAGGCCCCTAGGTGGAG----G a score=-7549.0 s hg17.chr17_random 181845 77 + 2618010 GACGCCACTTTGCACCCTGGAAGCC------GAG------CCACTGTAGGAGGCCGATGCC--------------ACTCCAGGCAG------GGTGTCCAC-----GGCCT-------GAG-- s mm5.chr11 46250517 73 - 121648857 --------TTTCTATGCTGGAAGTCACA--GGTA------CTACTGAAGAAGCTAG-------------------GCTCTAGGCAG------GGTGGTAGCCATTGGGTCT-------GAA-- s rn3.chr10 47589104 99 - 110733352 ---CCCCCTAGACTCCCTAGAGCTCCTA--GGAAGTTCCTATGCTGGAAGCCACAGATGCCACTAGAAAAGCTAGGCTCTAGGCAG------GGTTGCCATT----GGTCT-------GAG-- s danRer1.chrNA 213164850 93 + 390413307 ---GCCAGAGGGTACCCTAAAGCCTTTACTGCAAGT----CCACGGAGAGAGGTGGA------------------TCCCTGGGTAGCTTGCTGGGGTCAGA-----GGCCCCTAGGAGGAGGG a score=1811.0 s hg17.chr17_random 181922 38 + 2618010 CCCAGAGGCCCTCTGAG--CCTCACTAC-------GTGG--GCTGGGGT----- s mm5.chr11 46250591 33 - 121648857 CCCAGAGGTCCTCTAAG--CCTTTCT---------GTGG-----AGGGT----- s rn3.chr10 47589204 31 - 110733352 CCCAGAGGCCCTCTGAG--CCTCACT---------GTGG-------AGT----- s fr1.chrUn 135388810 38 - 349519338 CCCACGAGCCCTCAGCG--CTGCTGT---------GTAATGGTCGGGAT----- s danRer1.chrNA 213164943 51 + 390413307 CCAGGGGGCACCCTGGGGCCTCTACTGCAAGTCCAGTGA---GAGAGGTGGACC a score=2329.0 s hg17.chr17_random 181960 17 + 2618010 TGTGGG-----TGCCTGTGGAc s mm5.chr11 46250624 17 - 121648857 TGTGGA-----CATCTATAGAC s rn3.chr10 47589235 17 - 110733352 CATGGA-----CATCTGTAGAC s danRer1.chrNA 213164994 22 + 390413307 TAGGGGAGATCCTCCTAGGGGC a score=300.0 s hg17.chr17_random 181977 1 + 2618010 c s mm5.chr11 46250641 1 - 121648857 C s rn3.chr10 47589252 1 - 110733352 C a score=100.0 s hg17.chr17_random 181978 1 + 2618010 c s rn3.chr10 47589253 1 - 110733352 C a score=4888.0 s hg17.chr17_random 181979 146 + 2618010 ctctgcagcctggcccggccgctggtgctcccctctgcagcctggcccggcccctggtgctcccctctgcagcctggcccggcccctggngctcccctctgcagcctggcccggcccctggtgctcccctctgcagcctggcccgg s rn3.chr16 6714047 146 - 90224819 CTCTGGTGTCACACTCAACCCCTGGTGCACCTCTCTGGTGTCACACTCAGCCCCTGGTGCACCTCTCTGGTGTCACACTCAGCTCCTGGTGCACCTCTCTGGTATCACACTCAGCCCCTGGTGCACCTCTCTGGTGTCACACTCAC a score=723.0 s hg17.chr17_random 182125 13 + 2618010 TCCCTGGTGTTGC s rn3.chr16 6714193 13 - 90224819 CCCCTGGTGCACC s danRer1.chrNA 213165034 13 + 390413307 ACCCAGGGGTCCA a score=-4572.0 s hg17.chr17_random 182138 167 + 2618010 CCTCTGCAGCCTGGCCTGGTCCCTGGTGCTCCCCTCTGCAGCCTGGCCCGGCCCCTGGTGCTCTCC--CC-----------------------------------------------------------------------------------------------------------TCTGCAGCCTGGCCTGGTCCCTGGTGCTCCCCTCTGCAGCCTGGCCCGGCCCCTGGTGCTGCCCTC----TGCAGCCTGGCCCGGCCCCTGGTGCTCTCCCCT----- s rn3.chr16 6714206 163 - 90224819 TCTCTGGTGTCATACTCAGCCCCTGGTGCACCTCTCTGGTGTCACACTCAGCCCCTGGTGCACGTC---------------------------------------------------------------------------------------------------------------TCTGGTGTCACACTCAGTCCCTGGTGCACCTCTCTGGTGTCACACTCAGCCCCTGGTGCACCTCTC----TGGTGTCACACTCAGCCCCTGGTG--CACCTCT----- s fr1.chrUn 135388923 274 - 349519338 CCCCTGCTGCATGGCCATTCCCCTGCTGCATTCCCCTGCTGCATGGCCATTCCCCTGCTGCATTCC--CCTGCTGCATTCCCCTGCTGCATGGTCATTCCCCTGCTGCATTCCCCTGCTGCATGGTCATTCCCCTGCTGCATTTACCTGCTGCATGGTCATTCCCCTGCTGCATTTACCTGCTGCATGGTCATTCCCCTGCTGCATTCCCCTGCTGCATGGCCATTCCCCTGCTGCATTCACC----TGCTGCATGGCCATTCCCCTGCTGCATTCACCT----- s danRer1.chrNA 213165047 162 + 390413307 CCTCT-CTCCCTCGACTTGCAGTAGTGGCCTCAGTATGCCCCCTGGCCCTCCACCCAGGGGCCTCTGACC-----------------------------------------------------------------------------------------------------------CCAGCAAGCTACCCAGG-----GGTCCACCTCTCTCC-------CTGGACTTCTAGTAGAGGCCACAGGGTGCACCCTGGCCCTCCTCCTAGGG---GCCTCTGACCC a score=-232.0 s hg17.chr17_random 182305 100 + 2618010 CTGCAGCCTGGCCCGGTCCCTGGTGC-----------------TCTCCCCTCTGC-------AGCCTGGCCCGGTCCCTGGTGCTCCCCTCTGCAGCCTGGCCCGGCCCCTGGTG--CTCTCCCCT s rn3.chr16 6714369 96 - 90224819 CTGGTGTCATACTCAGCCCCTGGTG-------------------CACCTCTCTGG-------TGTCACACTCACCCCCTGGTGCACCTCTCTGGTGTCACACTCACCCCCTGGTG----CACCTCT s fr1.chrUn 135389514 117 - 349519338 CTGCTGCATGGCCATTCCCCTGCTGCATTCCCCTGCTGCATGGTCATTCCCCTGC-------TGCATGGCCATTCCCCTGCTGCATTCCCCTGCTGCATGGTCATTCCCCTGCTG--CATTTACCT s danRer1.chrNA 213165209 92 + 390413307 CAGCAAGCTA-------CCCAGGGGT-----------------CCACCTCTCTCCCTGGACTTGCAGTAGACACCCCAGGGTGCCCCC----------TGGCCCTCCACCTAGGGGCCTCTGACCC a score=295.0 s hg17.chr17_random 182405 4 + 2618010 CTGc s rn3.chr16 6714465 4 - 90224819 CTGG s danRer1.chrNA 213165301 4 + 390413307 CAGC a score=13687.0 s hg17.chr17_random 182409 403 + 2618010 agcctggcccggcccctggtgctgccctctgcagcctggcccggcccctggtgctctcccctctgcagcctggcccggcccctggtgctcccctctgcagcctggcccggtccctggtgctcccctctgcagcctggcccggcccctggtgctcccctctgcagcctggcccggcccctgttgctcccctctgcagcctggcccgatccctggtgctcccctctgcagcctggcccggcccctgttgctcccctctgcagcctggcccggcccctggtgctcccctctgcagcctggcccggcccctggtgctcccctctgcagcctggcccggcccctggtgctgccctctgcagcctggcccggcccctggtgctcccctctgcagcctggcccggcccct s rn3.chr16 6714469 401 - 90224819 TGTCACACTCAACCCCTGGTGCACCTCTCTGGTGTCACACTCAGCCCCTGGTG--CACCTCTCTGGTGTCACACTCAGAGCCTGGTGCACCTCTTTGGTGTCACACTCAGCCCCTGGTGCACCTCTCTGGTGTCACACTCAGCCCCTGGTGCACCTCTCTGGTGTCACACTCAACCCCTGGTGCACCTCTCTGGTGTCACACTCAGCCCCTGGTGCACGTCTCTGGTGTCACACTCAGTCCCTGGTGCACCTCTCTGGTGTCACACTCAGCCCCTGGTGCACCTCTCTGGTGTCACACTCAGCGCCTGGTACACCTCTCTTGTGTCACACTCAGCCCCTGGTGCACCTCTCTGGTGTCACACTCAGCCCCTGGTGCACCTCTCTGGTGTCACACTCAGCCCCT a score=953.0 s hg17.chr17_random 182812 28 + 2618010 ggtgctcc-cctctgcagcctggcccggc s rn3.chr16 6714870 28 - 90224819 GGTGCACC-TCTCTGGTGTCACACTCAGC s canFam1.chr9 38060477 25 + 53642819 GGAGCTCCATCTCTGGGGCTCG----GGA a score=3846.0 s hg17.chr17_random 182840 20 + 2618010 CCCTGGTGCTCCCCTCTGCA s rn3.chr16 6714898 20 - 90224819 CCCTGGTGCACCTCTCTGGT s canFam1.chr9 38060502 20 + 53642819 CCCCAGCATTGCTCTTTGGC s fr1.chrUn 135389646 20 - 349519338 CCCTGCTGCATTCCCCTGCT a score=380.0 s hg17.chr17_random 182860 6 + 2618010 GCCTGG s mm5.chr11 46250653 6 - 121648857 GTCAGA s rn3.chr16 6714918 6 - 90224819 GTCACA s canFam1.chr9 38060522 6 + 53642819 CCCTGG s fr1.chrUn 135389666 6 - 349519338 GCATGG a score=-3018.0 s hg17.chr17_random 182866 14 + 2618010 CCTGGTCCCTGG----TG- s mm5.chr11 46250659 14 - 121648857 CCCTATTCCCTG----TG- s rn3.chr10 47589271 13 - 110733352 -CCTATTTCCTG----GG- s canFam1.chr9 38060528 18 + 53642819 GTTGGAACCAGGAGCATG- s fr1.chrUn 135389672 14 - 349519338 -CCATTCCCCTG----CTG a score=8922.0 s hg17.chr17_random 182880 86 + 2618010 CTGCCCTCTGG------CTCTGCCACTCAAGCATGTGTCAGCTCCATGTTCTCAACTGTCCTGTTCCCTTCCCC----------TCACCCCATTGCTCCCTG s mm5.chr11 46250673 76 - 121648857 TCCCTCTGTGG------CTCTGCA--TTGAACCTGCGTCTGTTCCATGGTCTCATCCACACCGTTCCCTTCAC------------------ACTGCTCCCTC s rn3.chr10 47589284 76 - 110733352 CTCTTCCATGG------CTCTGCT--TTGAACCTGTGTCTGTTCCGTGGTCTCAACCGTACTGTTCCCTTCAC------------------ACTGCTCCCTC s canFam1.chr9 38060546 82 + 53642819 TCCCGCTTTGG-------GCTGCC--------AGGCATCAGCTTTCT--TCTTAGCCGTGCTGTTCCCTTTGCCCTGTGCA---TCGATCCATCGATCCCTC s fr1.chrUn 135389847 93 - 349519338 CTGCTGCATGGTCATTCCCCTGCT------GCATTTACCTGCTGCATGGTCATTCCC---CTGCTGCATTCACCTGCTGCATGGCCATTCCCCTGCTGCATG a score=94171.0 s hg17.chr17_random 182966 720 + 2618010 TGGGAGGAAGGTGCCAAAATTGATGTTCTCTCGCAAGGTAAGGGC--CTGCATGGCCA--GTAGAGTCTCCCTAGTAGTGCCATGTAAGGGCCTGAGCCAGCCCAGCTCAGATCCAGCGGCTTCCCA--CAGAGCTGCCTGGGCCCAGGCCCCACCCAGC-CTCCCAACCTGCAGG--CCCCCTGCCCCTCCT-----CCCAGCCTGGCAGCAAGGG-CTGCCCTTGGCAGCATGCTCACCCAGCAGGACAGGCTACTGCGTGCCACCCCAGGCTGTCCCCCAGCCCAGCCTGGGCCAC--ATG--TGGACTGCCGTGGGTAGGTGTGAGTGCCATCCACGCAAGCCTCAGGGCCCTGGTAGGGCACTGAGAGGCCTGCACGCTCCATCC--CACCCCTGCCCTCTCTAGAACCACCCATGCTATGACTCAGGGCATGTCCAGCCCTGCCTGGCGG--------GGGCTCC-AGCCCACCCCTAGGAGCAGAACTGAGCATTTGTCAAACCCCAGCTGTGCCAAGGTAGAGAC------------CAAGCTAGACCCTTCCTCCTTTCCCTCTGTCCAACTTTGTAGAGGTGGTCCA-----GGCCTGGGGACTGGAGA---GGTGCCGGCTGCCAGGCCACTCTGGCCAAAGCCCACCCCTTNCCTCTCTCCATGCCAGACACCAGGG--------------CCTTC----CCTTCCCAGCTCCAGgtgcgtttgtgtgtatgcac---atacatggctgtatgtgtgtctctgtgtgtacatgtgtg-gt s mm5.chr11 46250749 652 - 121648857 TGGGAGAAAGGTGCCAAAGCTGATGTTTTCCAGAAAGGTAAGGGC--CCGTGTGGCCA--TTAGAGAG--CCTTGTAGGACTGTGGAAAGGCCTGGGCCAGCCCAGCACACATGGAATAGCTTCCAA----GTGCTGCCTGG-CCTAGGCCTCACTTAGCACCCCCAACCTGTTGTATCTTCCTGCCCTTCTTTCTGACCCACCTTGCCACTGAGGGGCTGCCCTTGGCTCTGTGC----CTAGAGGGACA---------------CCCCATGCCATATCTCTACCCAGCCTGGGTCACTCATG--TGAACTGCCATGGGCAATTATGAGAACCATCTACATTGGGCTCAGGGCCCAGGCTGGGTACTTGAAGGCCCTGCCACTCCATCCTGCATCCCTGCTCACTC--------------CTCTGATTC---------------CTTTTTAGGGT--------GTGAT---AGCCCATC---------AGAGCTGAGCACCTGGTAACCCCAACCTGG--CAAGGGAGAGGCAGACTGCAGGGCCAGGCAGAGCCCATCCTACCCTTCCTC---CTGGCTTAGCAGAGCTTGTCT------GGCTTGGGGAC--------------CAGCTGTCAGATCACTCTGGTAGAGGCCAGT---TTCCCTTGCCCCATCTCAGAGCCTGGGGT--------TCCTGCTGCC----TTCTCCCTGTTCCCGGTGTGTGTGTGTGTGTG---------------TGTGTGTGTGTGTGTGTGTGTATGTGTAT---- s rn3.chr10 47589360 665 - 110733352 TGGGAGAAAGGTGCCAAAGCTGATGTTTTCCAGAAAGGTAAGGGC--CCAAGTGGCCA--TTAGAGAC--CCTTGTGGGGCTGTGAAAGGGCCTAGGCCAGCACAGCACACATGGAATAGCTTCCAA----GCGCTGCCTGG-CCTAGACCTCACCCAGCACCCCTAACCTGTAGTATCTTTTTGCCCTTCTCTCTGACCTGCCT---CACCAAGG--CTGCCCTTGACTCTATGC----CTAGAGGGACA---------------CCCCATGCCATATCTCTACCCAGCCTGAGTCACTCGTG--TGAACTGCCATGGGCAATTATGAGAACCATCAACATTGGGCTCAGGGCCCAGGTTGGGTACTTGAAGGCCCAACCACTCCATGCTGCATTCCTGCTCACTC--------------CTAAGATAG---------------CTTTTGAGGCT--------GCAAT---AGCCCA-----GGGAACAGAGCGGAGCACCTGGGGACCCCAGCCTGG--CAAGGGAAAGGCAGGCTGCAGAACTGAGAAGAGCCCATCCTACCCTTCCTC---CTGGCTTAGCAGAGCTTGTCCACTCCTCGCTTAGGGA--------------CCAGCTGTCTGATCACTCTGGTAGAGCCCAGC---TTCCCCCGCCACTTCTCAGAGCCTAGGGT--------TCCTGCTGCCTCTTCCCTCCCTGTTCCAGGTGTGTGTGTGTGTGTG---------------TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT s canFam1.chr9 38060628 674 + 53642819 TGGGTGGAAGGTGCCAAAGTTGATGTTCTCTCCCAAGGTAAGGGTAGTAGTGTAGCCAAGGTAGGACT--CCCCGTAGAGCCGTGGAGGGGTCTGGGCCTGGGCTGGTCTCAGGGCAAGGGACTAAAATCAGAGCTGCCTGGGCCCAGACCCTGCCCTCAA--CCCACCCTGTGAG-CTTCCCTGCCCACAGCGCC--CCCAGCC-------------ATGCCTCTGCCAC---------TCAGAGGGTCAGGCTGCCTGGCG---CCTCCCTccccccgccccccccgcctgggccccgcACGCCTGGGCTGCCACG-----------GCAGTGTCCACTTTGGGCCCAGTGTCGTGATGGGGCA-------------------------------CAGCCCTCTC--------------CTTGGGGAG---------------CTGCCCGGGCTTGCTGCCAGGGTTCCAGACCTGCCCCTAGGAAAGGAGTCGAGAA--TGGTGACTCCCAGCTGTGCCAAGGGGAGGGCAGGCTGCAGGGCCCTGGCATATCCCTCTCCCTCTCTCTTCACCCAGCTTTGTAGCAGTTGTCCA-----GGCTTGGGAACTGGGGAATGGGCACCTGCTGGCAGGCCACTCTGGCCAGAGCCATC--CATTCCCCTTCCCAGCCCAGACACCAGGCCCCTCTGTGCCCTGCCTTC----CCTACCCAGGCTCTAGAAGGATTGTGGGGCTGTACTGGGGAGGGGGGTGCATGTGTGCATCTGTGAGTCTCTGTGGGT-- a score=331.0 s hg17.chr17_random 183686 2 + 2618010 ac s mm5.chr11 46251401 1 - 121648857 -C s canFam1.chr9 38061302 2 + 53642819 AC a score=291.0 s hg17.chr17_random 183686 3 + 2618010 acc s canFam1.chr9 38061302 3 + 53642819 ACC a score=600.0 s hg17.chr17_random 183688 2 + 2618010 cg s panTro1.chr19 82387124 2 - 82489036 CG s mm5.chr11 46251402 2 - 121648857 CG a score=0.0 s hg17.chr17_random 183689 19 + 2618010 gtgcgtgcacacatgtaag a score=0.0 s hg17.chr17_random 183689 1 + 2618010 g a score=2337.0 s hg17.chr17_random 183690 18 + 2618010 tgc--gtgcacacatgtaag s panTro1.chr19 82387126 18 - 82489036 TGC--GTGCACACATGTAAG s mm5.chr11 46251404 20 - 121648857 TGCCTGTGTGCACAGATCAT s rn3.chr10 47590026 16 - 110733352 ----TATGTGCACAGATCTA a score=26633.0 s hg17.chr17_random 183708 230 + 2618010 tgtgtgtCCACTTTGGGCTGTATCCCTC-AGGTATCAGAAGTGGGG-GTGGGAGGCCCAG---------------------------TTCCTTCTCTGTGTAAATCCAGTTCTGTAGGGAAGGGGTGGTGCAGGCTGGGGAAGAGCTGGGGCTCTGGGCTGGGGTGTGGGGAGGGGCCCAGGGTGGGT-----GAGCTGAAGCAGGGCTGGCCTC---------------TGGAGGGCCAGGGTGGG---GGCTGGACACCCTNGGGGT--GCACCCTTGCTTG s panTro1.chr19 82387144 228 - 82489036 TGTGTGTCCACTTGGGGCTGTATCCCTC-AGGTATCAGAAG-GGGG-GTGGGAGGCCCAG---------------------------TTCCTTCTCTGTGTAAATCCAGTTCTGTAGGGAAGGGGTGGTGTAGGCTGGGGAAGAGCTGGGGCTCTGGGCTGTGGTGTGGGGAGGGGCCCAGGGTGGGT-----GAGCTGAAGCAGGGCTGGCCTC---------------TGGAGGGCCAGGGTGGG---GGCTGGACACCCT-GGGGT--GCACCCTTGCTTG s mm5.chr11 46251424 218 - 121648857 CTTGGGTAC----TGGTGTACAT-------------GGAGGTGAGG-ACCAGAGGCCTATGAA-------------CCATGGTGACCCTGTTCTTCTCTGTAAGT----GTCTACAAAAAGGAGG----ACAGGCCTGGGAAATACTGAGGCCCCAGA---------GGGGAG----CCACAGAGTTT-----AAACTGAAGAGGGGCAGGGTTCACACGCAGAGCCTCATGGGAATCCATGGTATA------TGGACTTCCT-AGGCT--GCCTTCTGACTTG s rn3.chr10 47590042 210 - 110733352 CATGGGCGC----TGGTGTACA-------------CAGAGGTGAGA-ACCAAAGGCCCGTGAA-------------CCATGGCG---GCCCTGTTCTCTGTAAGT----GTCTACTATAAACAAA--GACAAAGCCTGGGAAATGCTGAGGCCCCAGA---------GGGGAA----CCACAGTGTTC-------GCTGAAGCAGGGC-----TCCCACTCAGAGCCTCATGGGAATCTATGGTATA------TGGACTTCCC-AGGCT--GTGCTCCGACTTG s canFam1.chr9 38061305 261 + 53642819 TGTGTGTGTCCTTTGGGATGTGTCGCTCAAAACACTGGAGGTGGGGCATGAGAGGACCCCAAGCCATAGAATGATCCCATCCTCCAGGTCATTATCTGCTGAGATCCAGTTTTGCAGGGGAGGGG-------GTGCTAGGAGGAACTGGGGCTCTGAATTGGGGTTTGGGGAGGGAGCAAAAGGGGGTTAAGGAGGCTGAAGTAGGGCTGACAGG---------------TGGAGAGGCCCTGCACGGGGGGCCATATGCCAT-GGACTTGGGACCCTAACTCG a score=-114.0 s hg17.chr17_random 183938 1 + 2618010 T s canFam1.chr9 38061566 1 + 53642819 G a score=-31.0 s hg17.chr17_random 183938 1 + 2618010 T s rn3.chr10 47590620 1 - 110733352 C a score=-137.0 s hg17.chr17_random 183938 1 + 2618010 T s panTro1.chr19 82387372 1 - 82489036 T s mm5.chr11 46251642 1 - 121648857 G a score=16173.0 s hg17.chr17_random 183939 112 + 2618010 -----CCCCCCTTATAAG--GGTCagtctcagtttgcccatctgtaaatagggttggttgtccctgccctacat-gcctgttgtgagcattaaatgagttaacacgcggcccctggcacT s panTro1.chr19 82387373 112 - 82489036 -----TCCCCCTTATAAG--GGTCagtctgagtttgcccatctgtaaatagggttggttgtccctgccctacat-gcctgttgtgagcattaaatgagttaacacGCGGCCCCTGGCACT s rn3.chr10 47590621 99 - 110733352 -----ACCCCCAGGTAAG--GATGTATCTCAGTTTG-TTATCTGT-AACAGGACTCAC--CCCACACCCCGTGTAGCCAGGTAGGAACAAT----------ACACTTGGCACCTGGCACT s canFam1.chr9 38061567 116 + 53642819 CCATACCCTCTGGGTAAGCAGGGCagcttcagtttgcttctgtaaaaatagggtaagc--accccg-cctatgc-agtggctgtgagcatcaagtgagTAAGTGTGCAGTCACAGGTCCC a score=870.0 s hg17.chr17_random 184051 7 + 2618010 ACCAGTT s panTro1.chr19 82387485 7 - 82489036 ACCAGTT s canFam1.chr9 38061683 7 + 53642819 AGCTGCT a score=118921.0 s hg17.chr17_random 184058 1300 + 2618010 CTGGGAGACTTTTTATTTTTATTGTGGTAAAATACACAGATATACATTTCCCACCTCAACCACTTTTTTTTACTTCTTCCCTCAGCGctcaaccatttttagcgtacagttcagttgtgctaagtaccttctaccttcacactgctgtgaaacccatctccagagccctcttcagcttgcaaaactaaactggacccattaaacaacagctcccccttcctccntncnccctnggcccctggggaggctgccatttggcttccttctctatggatttgactattctagggacctcatgtaagtgcagtctcccggtatctgtccttttgagtctgcagtccccgggatctgtccttttgagtctgccttctttcactccgcagaatgtcttcaggcttcatccccattgcagcacgtgtcaaaacttccttttcaggctgaatgatacttcaGACTAGGAAGCTCCTCTTCTGAACACTTCACCAGCAACAGCCTCTGAGAGGCCCAGGGCGGGGCAGGGCTAGGTTTTTGGGGAGAGGCTCTCCTCTCAAAGCCAGACCCCCCATCTCTTCCCTCAGTGCCAGTACCAGCCAGGGCCTCCCCCGGGGCCGCTTCCACCCATCCTCCCtgtattagtccattttcatgctgccgataaagacatacctgagactgtgtaatttataaaggaaagaggtttattggacttgccgttacacgtggctgagaagacctcacagttatggctgaaagtgaaaggcacttctcacatgtttggtggcaagagagagaatgagagccaaggaaaacgggtttccccttatcaggccatcagatctcgtgagatgtattcactaccccaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcctgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatcagatctcgtgagacgtattcactacctcaagaaca s panTro1.chr19 82387492 1296 - 82489036 CTGGGAGACTTTTTATTTTTATTGTGGTAAAATACACAGATATACATTTCCCACCTCAACCACTTTTTTTTACTTCTTCCCTCAGCGctcaaccatttttagcgtacagttcagttgtgctaagtaccttctaccttcacactgctgtgaaacccatctcgagagccctcttcagcttgtaaaactaaactggacccattaaacaacagctcccccttcctcct----cccctggcccctggggaggctgccatttggcttccttctctatggatttgactattctagggacctcatgtaagtgcagtctcccggtatctgtccttttgagtctgcagtccccgggatctgtcctttagagtctgccttctttcactccgcagaatgtcttcaggcttcatccccattgcagcacgtgtcaaaacttccttttcaggctgaatgatacttcaGACTAGAAAGCTCCTCTTCTGAACACTTCACCAGCAACAGCCTCTGAGAGGCCCAGGGCGGGGCAGGGCTAGGTTTTTGGGGAGAGGCTCTCCTCTCAAAGCCAGACCCCCCATCTGTTCCCTCAGTGCCAGTACCAGCCAGGGCCTCCCCCGGGGCCGCTTCCGCCCATCCCCCCtgtattagtccattttgatgctgccgataaagacatacctgagactgcgtaatttataaaggaaagaggtttattggacttgccgttacacgcggctgagaagacctcacagttatggctgaaagtgaaaggcacttctcacatgtttggtggcaagagacagaatgagagccaaggaaaacgggtttccccttatcaggccatcagatctcgtgagacgtattcactacgtcaagaacagtaTCagaccatcagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaagagTGTCagaccatgagatctcgtgagacgtattcactacgtcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaaca a score=25439.0 s hg17.chr17_random 185358 297 + 2618010 gTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCAGACCATCAGATCNTCGTGAGACGTATTNACTACCTCANNAACAGTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaagagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCaga s panTro1.chr19 82393229 296 - 82489036 gTGTCagaccatgagatctcgtgagacgtattcactacgtcaagaacggTGTCagaccatcagatctt-gtgagacatattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatcagatctcgtgagacgtattcactacctcaagaacaCTGTCagaccatcagatctcgtgagacgtattcactacctcaagaacagTGTCAGGccatgagatctcgtgagacgtattcactacctcaagaacagTGTCaga a score=42492.0 s hg17.chr17_random 185655 470 + 2618010 ccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCAGACCATGAGATCTCGTGAGACGTATTCACTACGTCAAGAAGAGTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagatcatcagatctcgtgagacgtattcactacgtcaagaa s panTro1.chr19 82394391 470 - 82489036 ccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaagagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccatgagatctcgtgaggcgtattcactacgtcaagagcagTGTCagaccatgagatctcgtgagacgtattcactacgtcaagaacagTGTCagaccatgagatctcgtgagacgtattcactacctcaagaacagTGTCagaccgtgagatctcgtgagacgtattcactacctcaagaacagTGTCAGACCGTGAGATCTCGTGAGACGTATTCACTACGTCAAGAAGAGTGTCAGACCGTGAGATCTCGTGAGACGTATTCACTACGTCAAGAAGAGTGTCAGACCGTGAGATCTCGTGAGACGTATTCACTACGTCAAGAA a score=11716.0 s hg17.chr17_random 186125 125 + 2618010 cagtctgggagaaacctccccttgtgattcagttatctcccgctgggtccttcccacaacctgtaggaattatgggagtacaactccagatgagacttgggtggggacaccgccaaaccacgtca s panTro1.chr19 82395055 125 - 82489036 cagtctgggagaaacctccccttgtgattcagttatctcccactgggtccttcccacaacctgtaggaattatgggagtacaactccagatgagatttgggtggggacaccgccaaaccacgtca a score=1934.0 s hg17.chr17_random 186250 9 + 2618010 CCTCCCGTG s panTro1.chr19 82395180 9 - 82489036 CCTCCCGTG s rn3.chr10 47591460 9 - 110733352 CCTCCCCTA a score=0.0 s hg17.chr17_random 186259 3 + 2618010 AGG a score=191.0 s hg17.chr17_random 186259 2 + 2618010 AG s panTro1.chr19 82395189 2 - 82489036 AG a score=300.0 s hg17.chr17_random 186261 1 + 2618010 G s panTro1.chr19 82395191 1 - 82489036 G s mm5.chr11 46252600 1 - 121648857 G a score=120357.0 s hg17.chr17_random 186262 715 + 2618010 CCCACCCCT-AAACCATGGGATCAGTTTATGTCTCTTGCCAACTCCCAAGCTGGGGAGCATGTGCCCAAGGGCCCCACTAGCAGCTCCCTGCC-----CTGGAAACAGCCTCCCGACCTTCCCCTTCCGTGGACAGAGGTCAGGCTCCGTGGGAGGCCAGCCCCACAGAAGGTGGAGGCACT-----GGCGGAACCCCGGGTCA-GGACCAGGGAAGCTGCCTGTTTGGGCACAGAAGTTGGTGGCAGCACAGTGACAGGGCTTCAGGCAGTGCCTGCTGGTCCTT-TTGCTTTTGGCGAAATGTGTGGCTGCCCAGGGTGCTCAGGGAACTGCCGGGTGGAGGAGTA-GAGAGCAGCAGCAGGGGCCTCGTCACAGTCCCGGGGTCTGAAGGACAGAGCAGGCGTCACTCCCGTCCCAGCATGACAGCGCCCCTCGACCCAGCCTAGCTCCCACGGGTGTCTCGGGGTA-CGGAGGTGGGAC-CACCAGAGCCACTGGAAAGACATACGCCAGAACATGTGGTGGCCCAAAGGTTTGTAAGTGAAACGTGTCAGGAAACGTGGCCCAAATGGAAACATTTTAAGCTACAACAAACAAATGTATAAGGACTGTAAGAATAAGACA-CAGCAGTCAGGCACCTCCTGGTCAGGCCAGGCCACCAGATTCCCAGAACT--CTGCACTTCAGG--CACTTGGTGGGAAAGGTGCAAGGCAGGGTGAGGNGAGTTGGGTT s panTro1.chr19 82395192 714 - 82489036 CCCACCCCT-AAACCATGGGATCAGTTTATGTCTCTTGCCAACTCCCAAGCTGGGGAGCATGTGCCCAAGGGCCCCACTAGCAGCTCCCTGCC-----CTGGAAACAGCCTCCCGACCTTCCCCTTCCGTGGACAGAGGTCAGGCTCCGTGGGAGGCCAGCCCCTCAGAAGGTGGAGGCACT-----GGCGGAACCCCGGGTCA-GGGCCAGGGAAGCTGCCTGTTTGGGCACAGAAGTTGGTGGCAGCACAGTGACAGGGCTTCAGGCAGTGCCTACTGGTCCTT-TTGCTTTTGGCAAAATGTGTGGCTGCCCAGGGTGCTCAGGGAACTGCCGGGTGGAGGAGTA-GAGAGCAGCAGCAGGGGCCTCGTCACAGTCCCGGGGTCTGAAGGACAGAGCAGGCATCACTCGTGTCCCAGCATGACAGCGCCCCTCAACCCAGCCTAGCTCCCACGGGTGTCTCGGGGTA-CGGAAGTGGGAC-CACCAGAGCCACTGGAAAGACATACGGCAAAACATGTGGTGGCCCAAAGGTTTGTAAGTGAAACGTGTCAGGAAACGTGGCCCAAATGGAAGCATTTTAAGCTACAACAAACAAATGTATAAGGACTGTAAGAATAAGACA-CAGCAGTCAGGCACCGCCTGGTCAGGCCGGGCCACCAGATTCCCAGAAGT--CTGCGCTTCAGG--CACTTGGTGGGAAAGGTGCAAGGCAGGGTGAGG-GAGTTGGGTT s mm5.chr11 46252601 654 - 121648857 TCCATCTCTGGGACAGTGACACCTACTTTTATCGCTTGGCAACACAAAAAGCTGATGGGATCTGCCTGAGACAACCCCT------TTCCTACCTGTGGCCGAGCACAGCCT-----CCTTCCCCTCTCCTGGATTCA-GTCAGCTCCT---GGGGGCTATCCAC---------GTAGGCCCCTGCAGGGCAGACCCTAGACTCAGGGGACAGGGATGCTGCCTG------------AGCTAGTGTCATTGTGTGAACCCAGCCTCTGGCTGAACCCATCATCCCTTACTTCTTCTACACCAGTGTGTGGTGCTCTGGGATGCCCAGGGACCTGCTAGGTAGACGGGTGTGAAAGTAACATCAGGGACC-AACCATAGACTAGGGAGCCAACGGGCAGAGCATACCTCATTGCCAGCTTAGCATGACAGCTGCCCCTGTCCCAGCC-AGCCCTTGTGGATGCCCCAGGGCCTCAGAAGTTGGAC-TGGTATG--TATTTGCACTATCTCTGGCCAGTC---TCCTGCCTCAAAGATCTACAAGGGCAAAG-----AGAAACCCG-------TGAAAATGTTGTAAAC----ATAAGCAAATGTGCAAGAA--GTAGAAATAAAACAGAAACCCACATTTGTCCCCTACTGAGGCTGGGCCCCCAGATCCCC--------CACCCCCCCAGGGCAGCTCCCTGGG----------GGTAGGATCTGG-CAG-TGAGTG s rn3.chr10 47591469 605 - 110733352 CCCATCCCTGAGACAGTGGCACCTGCTTCTATCCCGTGGTAACATGATAAGCTGATGGGCTCTGCCTGAGACAACCCCT------TTCCTACCTGTGGCTGAACACAGCCT-----CCTGCCCCTCTCCTGGATTCA-GTCAGCGCCTGGGGGTGTCC--------------TGCAG----------GGCAGACCCCAGACTCA-GGGACAGGGAGGCTACCTG------------AGCTGT------------------GACTCTAGCTGAGCTCATCAACCCTT---GCTTCTACCCCAGTGTGCTGCT--CTAGGGTGCCCAGGGGCCTGCTAGGTAGACAGGTGTAAAAGTACCATCAGGGACTACATCATAGACTAGGGAGCCAACAGGCAGAGCGTGCCTTGTTGCCATTCTAGCATGACAGCTGCCCCTGTCCCTGCC-CACCTTTATGGATGCCCTGGGCCT-CAGGAGTTGGACTTGCCCTA-------------TCTCTGGTCAATC---TCCTGCCTCAAAGATCTACAAGGGCAAAG-----AGAAACCAG-------TGAAAACATTGTAAAC-ATGATAAAC--------AGGAA--GTAGAAACAAAACAGAAACAGTCAGTTGTCTCCTCCTCGTGCTGGGTCCCCAGATGCCCCAGGGCAGCTGCCCTT------TACTGCCTGGG---GGTG---AGGAGTCACAGG------GGGTG a score=15582.0 s hg17.chr17_random 186977 211 + 2618010 TGGAAGAGCAGCCTTGTCACCTTGAGCACGTGTTGGGCCACTGAGCCAGGCCCTGTCCCAGAGGCAG---CCCCACAGTGCAGGGCACAGCTCAGATG--CACCCAGCAGACCTCAACCGCTTCTCCGGCGTCTCACGGGGG-CCTGGCGTGCAGGGAAGGGAG--CAAACCctgcctgccaggccctgtngtccncacagtctccctccctctcactc s panTro1.chr19 82395906 210 - 82489036 TGGAAGAGCAGCCTTGTCACCTTGAGCATGTGTTGGGCCACTGAGCCAGGCCCTGTCCCAGAGGCAG---CACCACAGTGCAGGGCACAGCTGAGATG--CACCCAGCAGCCCTCAACCACTTTTCCGGCGTCTCACGGGGG-CCTGGCGTGCAGGGAAGGGAG--CAAACCCTGCCTGCCAGGCCCTGT-GTCCACACGGTCTCCCTCCCTCTCACTC s mm5.chr11 46253255 182 - 121648857 TGAATGGCCACCATTATCAAGGTACACACACTT----CCTCCAGGTCAAGCCT-------------------CAGTAGCTCTGAGCCTAGCTTAAAT----CCCTACCCTCACCCAGCTACTTCTCTGATACTGTCTGAGAG-CCTGGAAAG--GGGAGAGGAG--TCGCACCCATTCGCCCACACCTGCATTCCTC-----CTTGTTCTGTTCCACTC s rn3.chr10 47592074 164 - 110733352 TAAAAGGCTGTCATTACCAAGGCACATACACTG----CCTCCAGGTCAAGCCC-------------------CAGTAGCTCTGAG-----------------CCTAGCTACTTT------TTTTTCTGTTATTTTCTGAGGG----GGAGAAAAGGGAAGGGAAGTCCCACCCATTCTCCCTGCAACTGTGTTCCTC-----CTTGCTCTGTTCCACTC s canFam1.chr9 38061826 198 + 53642819 TGGGGGACCTGTGTCCTCGCCATGGGTGCACACGGGGCTGCAGAGCCGGGCAC--------AGGCGGAGCCCCAGAAGCTCCT-GCACAGCTCAGATACCCTCACACCAGCCCTCGGCCCCCTCTCCAGCATCTTCAAAGGGGCCCAGCGGGTGAGGAAGGGGA--ACAAATTACCACGC--GGTACTattgccacc-----tctactcctgccta--- a score=3312.0 s hg17.chr17_random 187188 25 + 2618010 cagccctaggaaggtgggagtatta s panTro1.chr19 82396116 25 - 82489036 CAGCCCTAGGAAGGTGGGAGTATTA s mm5.chr11 46253437 17 - 121648857 --------AGACTGTGGGAATGATT s canFam1.chr9 38062024 23 + 53642819 --cccctgggaaatgaggactagta a score=765.0 s hg17.chr17_random 187213 12 + 2618010 cacccccgccc--t s panTro1.chr19 82396141 14 - 82489036 CACCCCTGCCCttt s mm5.chr11 46253454 12 - 121648857 AACGCTTCCCC--T a score=25522.0 s hg17.chr17_random 187225 280 + 2618010 ttttttttttttttttttaaacttgagacagggtctcactctgtcacccaggctggagtgcagtggtgcgatcacggttcactgcagcctccgtgtcccaggttcaagcgatcctcccacctcagcttctctagttgctggaaccacaggcacatgccaccccacccagctaattttttagttttttgaagagacagggtcttactgtgttgcccaggctggtcttgaactcctgggctcaagcgctgggattacaggcgtgagccaccgtgcccggcca s panTro1.chr19 82396155 280 - 82489036 tttttttttttttttttttaacttgagacagggtctcactctgtcacccaggctggagtgcagtggtacgatcacggttcactgcagcctccgtgtcccaggttcaagcaatcctcccacctcagcctctctagttgctggaaccacaggcacgtgccaccccacccagctaattttttagttttttgaagagacagggtcttactgtgttgcccaggctggtcttgaactcctgggctcaagcactgggattacaggcgtgagccaccttgccccgccA a score=40032.0 s hg17.chr17_random 187505 332 + 2618010 acccctttaacagatgataaagctgaggcttagcgtgcaaagtaactcatcca-cttcccagctggtga--acaggagctgagcctggagcccaagccagccaggcccccaaacctctg--ccctttgccagtgGCAGGGAAGTAGGTGG-TTGGA--AGCCC--------------CTGCCGCATCCCCCAGAGCTCC--GTCAAACCGAGGTGGGGTGGGCCTGGGAGGGNAGCCCCAGCCTCCCCTTGGAGATGGGCCTGGTGTGAGCCGCCGAGCTGCCTCCCTGACCCGGCTGGGTAGAAGCCCTTTGAATACTATCCTGGGGTTGCCGGCTGCACCCCCACNANNGATGC s panTro1.chr19 82396435 328 - 82489036 Accccttgaacagatgataaagctgaggcttagcgtgcaaagtaactcatcca-cttcccagctggtga--acaggagctgagcctggagcccaagccagccaggcccccaaacctctg--ccctttgccagtgGCAGGGAAGTAGGTGG-TTGGA--AGCCC--------------CTGCCGCATCCCCCAGAGCTCC--GTCAAACTGAGGTGGGGTGGGCCTAGGAGGG-AGCCCCAGCCTTCCCTTGGAGATGGGCCTGGTGTGAGCCGCCGAGCTGCCTCCCCGACCCGGCTGGGTAGAAGCCCTTTGAATACTATCCTGGGGTTGCCGGCTGCACCCCCAC---AGATGC s canFam1.chr9 38062047 299 + 53642819 accccttttatagataaca---ctgaggctctg-gggcaaagtcactcctccaccctcccagctaataagtgcaggagcagagatgtgggccccagccagcctggctctaaagtctgtgtactccttccCAGGAGTAGAGCCATGGGGGGACTGGAGGAGCCCACCTCCTATCTCAGCTTCCTCTTCCCCCAGCTCTCCAAACCAAACCAAGGTCAGGGGG----AGGAGGG-AGCCTCAGTC-CTCCTTAGAGGTGGGTCT-------GCTCCTGAGTAGCCAACTTGGC-------------AGCTCAT------------------------CTGTGATGCCAC---ACATAT a score=1008.0 s hg17.chr17_random 187837 4 + 2618010 CACA s panTro1.chr19 82396763 4 - 82489036 CACA s mm5.chr11 46254009 4 - 121648857 CTCT s canFam1.chr9 38062346 4 + 53642819 CACA a score=95781.0 s hg17.chr17_random 187841 585 + 2618010 GCTGCCTCCCTG-----CATCCCTGTGCACCATC----CCAGAAGGAAACAAATGCAATTTTCAGAGACAAGAGCCTGC-TGAGGTCAGCAAA-GCCCCTCTCTGTCCATGCTTCTGT-GTGCCTCTGGCTGTGCACGCGTGGCTGGGTTTTCTGAAAGAACCAGAGTGAGAG------AGGGGTGCCATCTTGTGGAGGGACCCTCTGTGGCCAGTCTGCTTGTGTGATCTCTGTGGA------CTGACTGGGAGTTGTGGCAAATATGGCCAGAAATGGGG--------CCTAGTCTC--GGACTG-------TGTCCCGGGGT--------------------------------------------TATGTGGATTTAGGGTCAGTGAGGGGCATGGCCACTCAGGAGGCCACGCTTGGTAGATGGGAG-ACGGGAGTCAGGATGATG-GCAGGGCCTGAGCAAAGCAGGGTGGAGAGGGAGGC----------TCAGAGAAGGGGGAGCCACCTGGCTTCCA-------GGATGAGGACAAGAGAAAGTCT-GTCCTGACAG--AGGCCCCATGACAGCTGCCCTGGG--CCAGGATGTTT-TGGGGAGGGGAGATTGCATCAGCGTTGAGCCATCCTCANCNTNCCCTNCCANTCTNGGAGGTGTGGGGCCCGGGGGCTTCTGTGAAAG s panTro1.chr19 82396767 579 - 82489036 GCTGCCTCCCTG-----CATCCCTGTGGACCATC----CCAGAAGGAAACAAATGCAATTTTCAGAGACAAGAGCCTGC-TGAGGTCAGCAAA-GCCCCTCTCCGTCCATGCTTCTGT-GTGCCTCTGGCTGTGCACGCGTGGCTGGGTTTTCTGAAAGAACCAGAGTGAGAG------AGGGGTGCCATCTTGTGGAGGGACCCTCTGTGGCCAGTCTGCTTGTGTGATCTCTGTGGA------CTGACTGGGAGTTGTGGCAAATATGGCCAGAAGTGGGG--------CCTAGTCTC--GGACTG-------TGTCCCGGGGT--------------------------------------------TACGTGGATTTAGGGTCAGTGAGGGGCGTGGCCACTCAGGAGGCCATGCTTGGTAGTTGGGGG-ACGGGAGTCAGGATGATG-GCAGGGCCTGAGCAAAGCGGGGTGGAGAGGGAGGC----------TCAGAGAAGGGGGAGCCACCTGGCTTCCA-------GGATGAGGAGAAGAGAAAGTCT-GTCCTGACAG--AGGCCCCATGACAGCTGCCCTGGG--CCAGGATGTTT-TGGGGAGGGGAGATTGAACCAGCATTGAGCCATCCTCAC---TCCCTCC--ATCT-GGAGGTGTGGGGCCCGGGGGCTTCTGTGAAAG s mm5.chr11 46254013 507 - 121648857 GCTGCCTCCCTATTCCCCACCCCCATAGGCCTTCAGCACCAGAAAGGAGTAAACTTAATTCCC-------------------AGGCTAGCTGA-GCCCTTGTGAGTCCCC----------TACCCTAAGCTGTACATTC----CTGGGCTGGCGGAAGAAACTGAAGTCAAAGTTATCAAGGGGTGCCATCTTGTGGAAGGACACTCCATGG-CAGGCAGCCGGTGACTTCTAGGGACA------CCAAC---------CAGCAAATGCAGAAGGAAATGGCAGCTGACCTCCCGGACTC--GGACCGA-AGTGCCTTCCCAGCAT-------------------------------------------CCACAGGAATGTAGGG---ATGA-GTGTACAGCCAATCATGGAG----ACTTGG--GGTCAGAG-AGGGAAGACCCAACAAGGAGTGGTGTCTGG--AAAGTGGGG-AGAGAGACAGGCCTCCCCAAGTTTAGAGTGAGGTGTGTCTTCTGGGTTC--------------------------AGTTT-GTCAAGAAAGTAAGA---AATGAAAAGCCCCAGGGG--CCAGAGTG----TGGGAGAGGGAAGCCACCCCAGCACTG--------TTAG------------GCCT----------------------TATCTTCAGGG s rn3.chr10 47592833 501 - 110733352 GCTGCCTCCCTATCTCCCA-CCCCGTAGGTCTTCAGCACCCG-GGGGAATAGACATAATTCCC-------------------AGGTTAGCTAAGGCCCTTGTGAGTCTCC----------TGCCGTTAGCTGTCCATTC----CTGGGCTGGCAAAAGAAACTGAAGTCAAAGTTAGCGAAGGGTGCCATCTTGTGGAAGGACACTCCATGG-CAGGTAGCCTGTGACTTCTAGGGACA------CCAAC---------CAGCAAACGCAGGGGGAAATGGCA--------GTCACAGGT--GACCTCC-AGGACTTTCCCAGCCT-------------------------------------------CCACAGGAATGTAGGG---ATGA-GTATACAGCCAATCATGGAG----ACTTGG--GGTCAGAG-AGGGAAGACCCAACAAGTAGTAGTGTCTGG--AAAGTGGGG-AGAGAGACAGGCCTCCCCAAGTTTAGAGCAAGGTG---TCTCTGGGTTC--------------------------AGTTT-GTCAAGAAGT--AGG---AAGCAAAAGGACCCGGGAGTGCAGAGTG----TGGGGAGGGATGCCTACCCCAGCACAGCTTGGACCT---------------ATCT-------------TCAGGGAGATTC-------- s canFam1.chr9 38062350 620 + 53642819 GCTGCCTCCCTA-----CATGTCTGTGTGCCACC----GCAGAAGAAAAAGAGTATAATTTTCAGAGCTAAGAGCAGTCATGAGGTCAGATAA-GCCCCTGTCTGTTTCTGGTTCCATCGGGTCCCTGGCTGTGCATACTTGACTGGTT----------ATTCAAAGTTAGTG------AGGGATGCCATCTTGTGGAGGGACCCTCCATGGCCAGCCAGGTTGTATGGCCTCCTTAGACTTAGGCTGGCAGGGAGCTGTGGCAAATCCAGAAAGAAATTGAG--------CCTGGTCTCCAGGACACAGAACATTTTCCCATGGTAAAGAGGGAAATCTATAGGTGAGTGGACAGAAAGTCAAGAGGGTCATGTGGACATGGGATCAGTGA---------------GGGAAGTCTCTGTTGGGGAATGGGGGAAGGGGAATCCAGAAGAAG-GAAGGGCCACACCAAAGCAGGATAATGAG---GACCTCAT-----TCAGAGGTGGAGGAGTCACCTGGCATCCACAGAAAGGGAGAATAGAAAGACAAAGTCTGGTCTTGAAAG--ACATCCCATGACACCTGCCCTGGG--CCAGGACACTGAGGGGAAGGGGAGA--GCACCAGCCCTGGGTCATCCTCACTG----------TTCT-GAGAGCATGGGCGCAGGGGGCCTATGCAGAGA a score=1682.0 s hg17.chr17_random 188426 87 + 2618010 GGGCCATGAATGGGCCCAGCCAGGAGACCCAGGGGACA--AG-----------------GGCATCTGCAGGCC---CTGTCAGTTCCATGTCCCCGATTTCCAGTTCAC s panTro1.chr19 82397346 87 - 82489036 GGGCCATCAATGGACCCAGCCAGGAGACCCAGGGGACA--AG-----------------GGCATCTGCAGGCC---CTGTCAGTTCCATCTCCCCGATTTCCAGTTCAC s mm5.chr11 46254520 65 - 121648857 AGACTGGAAATG---TCAGAGAGGAGGCCCTG------------------------------CTCAGCAGGCC----------TCTTGTTTCCCCTCTCT-CAACTCAC s rn3.chr10 47593334 59 - 110733352 ------GAAATG---TCGGAGAGGAAGCTCTA------------------------------CTCAGCAGGCC----------TCTTGTTAACTCTCTCT-CAACTCAC s canFam1.chr9 38062970 103 + 53642819 GGGTCTTGAATGGACCCAGCTGGGAGGCCCAG-GGACA--AGGGATACCTGCCCACCGAGGTGCCTGGAGGCC---CTGGCTGCTCTGTGTCTCCAGCTCCCATCTCAC s galGal2.chr19 6609000 88 + 9463882 GTGCCATGGCTGTGCCACGCTGAGGG---CAGGGAGCAGCAG-----------------CACAGCCGCAGACAGGACTGGGGTTGTGAGCTGCTCTAACC-CTGCTCAT a score=2072.0 s hg17.chr17_random 188513 9 + 2618010 ACCGTTTG---C s panTro1.chr19 82397433 9 - 82489036 ACCCTTTG---C s mm5.chr11 46254585 8 - 121648857 ACCCTCT----C s rn3.chr10 47593393 8 - 110733352 ACCCTCT----C s canFam1.chr9 38063073 9 + 53642819 ACCTTTTG---C s galGal2.chr19 6609088 1 + 9463882 -----------C s fr1.chrUn 341583650 12 - 349519338 ACCGTCTGTCCT a score=168599.0 s hg17.chr17_random 188522 93 + 2618010 TGTT---CTCTGCCCAGGGCCTGAAGCCAATGGACCACAATGGGCTGGCAGACCCCTACGTCAAGCTGCACCTGCTGCCAGGAGCCAGTAAGGTGA s panTro1.chr19 82397442 93 - 82489036 TCTT---CTCTGCCCAGGGCCTGAAGCCAATGGACCACAATGGGCTGGCAGACCCCTACGTCAAGCTGCACCTGCTGCCAGGAGCCAGTAAGGTGA s mm5.chr11 46254593 93 - 121648857 TGGT---CTCTACTCAGGGCCTGAAGCCGATGGACCACAATGGACTGGCTGATCCCTACGTCAAACTACACCTGCTGCCTGGAGCCAGCAAGGTGA s rn3.chr10 47593401 93 - 110733352 TGGT---CTCTGCTCAGGGCCTGAAGCCGATGGATCACAATGGACTGGCTGATCCCTACGTCAAACTACACTTGCTGCCTGGAGCCAGCAAGGTGA s canFam1.chr9 38063082 96 + 53642819 TGTTCCCCTCCACGCAGGGCCTGAAGCCGATGGACCACAACGGGCTAGCAGACCCCTATGTCAAGCTGCATCTGCTGCCAGGAGCCAGTAAGGTGA s galGal2.chr19 6609089 93 + 9463882 ACTC---TCCCCCCCAGGGCCTGAAGCCAATGGATCACAACGGTTTGGCCGACCCCTACGTCAAGCTGCACTTGCTTCCTGGGGCCAGCAAGGTGA s fr1.chrUn 341583662 93 - 349519338 GCTT---GTCTTTACAGGGCCTCAAGCCGATGGACTACAACGGCCTTTCTGACCCTTACGTCAAGCTGCACCTACTGCCAGGAGCCAGCAAGGTGA s danRer1.chrUn 153136888 93 + 367113659 TGTG---TTTGGTGAAGGGTCTCAAGCCAATGGACTCCAATGGTCTGGCCGATCCTTATGTGAAGCTGCACTTGCTTCCGGGTGCCAGTAAGGTAA a score=6618.0 s hg17.chr17_random 188615 20 + 2618010 GGGGTTCCA-CCCAGGCCTGC s panTro1.chr19 82397535 20 - 82489036 GGGGTTCCA-CCCAGGCCTGC s mm5.chr11 46254686 21 - 121648857 GGGTTTCTACCCCAGGCATGG s rn3.chr10 47593494 21 - 110733352 GGGTTTCTGCCCCAGGCACAG s canFam1.chr9 38063178 21 + 53642819 GGGGGTCCATCCCAGGCCTGT s galGal2.chr19 6609182 17 + 9463882 GA---CTCA-CTCACTTCTCC s fr1.chrUn 341583755 18 - 349519338 GCGCTCC---CCCAAGTCTGC a score=-908.0 s hg17.chr17_random 188635 2 + 2618010 CC s panTro1.chr19 82397555 2 - 82489036 CC s mm5.chr11 46254707 2 - 121648857 CC s rn3.chr10 47593515 1 - 110733352 C- s canFam1.chr9 38063199 2 + 53642819 CA s galGal2.chr19 6609199 2 + 9463882 CT a score=653.0 s hg17.chr17_random 188637 14 + 2618010 ACCAGCTGCACCCG----- s panTro1.chr19 82397557 14 - 82489036 ACCAGCTGCACCCA----- s rn3.chr10 47593516 14 - 110733352 ACTGGCTTGGCCCT----- s canFam1.chr9 38063201 14 + 53642819 GCCAACTCTGCCTG----- s galGal2.chr19 6609201 14 + 9463882 -----CCCTCCCCATCACT a score=204.0 s hg17.chr17_random 188651 14 + 2618010 CCCACCACCTCAGG--- s panTro1.chr19 82397571 14 - 82489036 CCCCCCACCTCAGG--- s rn3.chr10 47593530 14 - 110733352 CCTGGCCTCCCTGG--- s galGal2.chr19 6609215 14 + 9463882 ---TTCCCCTATGGAGG a score=381.0 s hg17.chr17_random 188651 19 + 2618010 CCCACCACCTCAGGCAATG s galGal2.chr19 6609215 19 + 9463882 TTCCCCTATGGAGGCAATG a score=1419.0 s hg17.chr17_random 188665 5 + 2618010 CAATG s panTro1.chr19 82397585 5 - 82489036 CAATG s galGal2.chr19 6609229 5 + 9463882 CAATG a score=0.0 s hg17.chr17_random 188670 6 + 2618010 CACTCT a score=382.0 s hg17.chr17_random 188670 4 + 2618010 CACT s panTro1.chr19 82397590 4 - 82489036 CACT a score=0.0 s hg17.chr17_random 188670 4 + 2618010 CACT a score=573.0 s hg17.chr17_random 188674 2 + 2618010 CT s panTro1.chr19 82397594 2 - 82489036 CT s canFam1.chr9 38063215 2 + 53642819 CT a score=2584.0 s hg17.chr17_random 188676 23 + 2618010 GGTCCTTTTGCTTTGGGGCCTGG s panTro1.chr19 82397596 23 - 82489036 GGTCCTTTTGCTTTGGGGCCTGG s canFam1.chr9 38063217 13 + 53642819 GG----------GTTGGGCCCAG s galGal2.chr19 6609234 23 + 9463882 AGGGTTTCCCCTCTGGGAGCTGG a score=74717.0 s hg17.chr17_random 188699 426 + 2618010 ACTGGGCTGCGGGCACCCAGGGAGGCCCACAGCTGCCAC-TCCCCTCAGAGTCCAAGCAAGCTGATGGGACCTCAGCCATTCAACTGCACACAGAGCACCCAGTCTGCCCCACA-CCCTGTTGCCTCCTGGGGACCTCACGAGTCAGCGTTACCTACCTGCTGATCTGGGGAAACCC-CTGGAGAATTTCCAGGCCAGCATTTTATAAGAAGCATTCTCAGCTGGAAGTTACTATT-------AGGTGCAAACAAAGGACtctgtggttaaataacatnggnnggaaacattgttaaacaggtttctgtaccacaggacttctcagagcatctaacgtgttgatgggctgttccctgactctccgcaangggggatgaagtgggcagaatctgc--------------------cCCTCATTCCTACGCCGGATGACCCAAGCGTCCGACCACACA s panTro1.chr19 82397619 422 - 82489036 ACTGGGCTGCGGGCACCCAGGGAGGCCCACAGCTGCCAC-TCCCCTCAGAGTCCAAGCAAGCTGATGGGACCTCAGCCATTCAACTGCACACAGAGCACCCAGTCTGCCCCACA-CCCTGTTGCCTCCTGGGGACCTCACGAGTCAGCGTTACCTACCTGCTGATCTGGGGAAACCC-CTGGAGAATTTCCAGGCCAGCATTTTATAAGAAGCATTCTCAGCTGGAAGTTACTATT-------AGGTGCAAACAAAGGACtctgtggttaaataacatgg---ggaaacattgttaaacaggtttctgtaccacaggacttctcagagcatctaacgtgttgatgggctgttccctgactctccgcaa-gggggaTGAAGTGGGCAGAATCTGC--------------------CCCTCATTCCTACGCCGGATGCCCCAAGCGTCCGACCACACA s canFam1.chr9 38063230 450 + 53642819 GCTGAACTCAGGATGCCCAAGGAGGTGCATACCTCCCATGGCCTCTCACAGATCAAGCAAGTTGATGGGATCTCCGTGATTCACCTCCACCCAGAGCACCCAGTTAGCCCCACAGCCCCCAGACTTCCTGGGAACCTCA--GGTCAGCACCGCTTGCCTGATGAATTGGGGAAACCCTCCAGAGAATTTCTAGGCCAGCATTTTATGAGAAGCAGACTCGATTGGAGGTTACTATTGTGTTTGGGGTGGGGGGGGGGTgctctgtggccaaataacattg---ggaaaccttgttaaacaggtgtctttactctaggacttatcagagcctttaaaatgtttgtgGGCTACCCTGTGACACTACACAA-GGTAGATGGAGTGGGTAGGTGCTGCCCAGTTTGGGGGCCACAGAACCCTTGTTCCTGTACTCGGTGACCCAGCGGGCAGACTAAGCA a score=3942.0 s hg17.chr17_random 189125 43 + 2618010 TGTGCTCAGGGCACCAGCACAACAGGTGCATCTCGGACAGGAG s panTro1.chr19 82398041 43 - 82489036 TGTGCTCAGGGCACCAGCACAACAGGTGCATCTCGGACCGGAG a score=28220.0 s hg17.chr17_random 189168 175 + 2618010 AGAGAAAAATTGCTGTTAAATAAAAGCATCAAGGTGACCTTGAGCCATGGAAAGTCAGAACTTAATTAGACTTCCTTCTGTGCATCCTACTCTTCAGTGCTGTTTTA-TTTTTAATTTCATGGGGCAGAGTCTGAGTTTACGTGGAGGCCTAAATGGGTAGGCCTGGGGCCCACAG s panTro1.chr19 82398084 175 - 82489036 AGAGAAAAATTGCTGTTAAATAAAAGCATCAAGGTGACCTTGAGCCATGGAAAGTCAGAACTTAATTAGACTTCCTTTTGTGCATCCTACACTTCAGTGCTGTTTTA-TTTTTAATTTCATGGGGCAGAGTCTGAGTTTACGTGGGGGCCTAAATGGGTAGGCCTGGGGCCCACAG s canFam1.chr9 38063928 170 + 53642819 AGAAAAAAGTTGCTATTAAACAAAAGCATCACGCTGACCTTTAGCCCTGGAGGAACAAAAC-CGATAACACTTCTTTACATGTGTCTTATAGTTCAGTGTTGTCTTATTTTTTAATTTCACGGGA-AGAG---AGGGTTATAT-CATCCTTTCAGAGTTGGGTCTGGAACCCACAG a score=43467.0 s hg17.chr17_random 189343 299 + 2618010 CAGCCCAGGAGGACCACCC---CAGAAGGGGCCCTTCCCCCTTCTCTAGGGAAGGCAGGACTGTAGGAGAAATGGCAGTGCCCCACCACCTACTCCTGGGGAAGAAATGGGCTCCCCACACCGGGTCTTGATGCCCTTATGCTGCAAGAAGGGCT--CAGGGATATGAGGGCCGAGGGCGAGTATGACCAGGGAAGTG--------------------TGCTCAGTGACCCTTCATTTGTGGGA-CTGGAGCCGGCAGTGCATGGCTGCCGAGTTGTAGGAA---------GTCCccaggactttccc------tagtgttttataaagagcagtctcct s panTro1.chr19 82398259 299 - 82489036 CAGCCCAGGAGGACCACCC---CAGAAGGGGCCCTTCCCCCTTCTCTAGCGAAGGCAGGGCTGTAGGAGAAATGGCAGTGCCCCACCACCTACTCCTGGGGAAGAAATGGGCTCCCCACACCGGGTCTTGATGCCCTTATGCTGCAAGAAGGGCT--CAGGGATGTGAGGGCCGAGGGCGAGTATGACCAGGGAAGTG--------------------TGCTCAGTGACCCTTCATTTGTGGGA-CTGGAGCCGGCAGTGCGTGGCTGCCGAGTTGTAGGAA---------GTCCCCAGGACTTTCCC------TAGTGTTTTATAAAGAGCAGTCTCCT s canFam1.chr9 38064490 327 + 53642819 CAAGGCAGGAGGGCCACCCCGACAGAGGTGATGATTCCCTCTT-----GGGGGTGCAGGGCTGTTGGGGAAACAGCAGCAGCCCACCACCTGTGCCTAGAGAAGC----TGCTCCCCGCTCTAGGCCTAG-TGTCCTCAT-TGGCAGGTGGGACTCCCAGGGCGCTGAAGGCTGAGGGC-ACTATGACCAGGGGAGTGTCCCTAACTCAGGAACTCAATGCTGTGAGTCCCTAGATTCATGGGACCTCAAATTGACAGTGC-TGGAAAGCTAGTCCTAGGGACCTTACCACACGCACAGGATTTCCCACGTAGGCAGTGTTTCATAAAAAGCAGTCTCCT a score=44554.0 s hg17.chr17_random 189642 340 + 2618010 tacaaacagctcctgaaagcaa---tgggagagagggattcctgtgccc-tttccacagtggggaacctgatgc--------------------------tgccacagagct-------ggaat---------tggaagcccagg-ctgtctgacctcccagcctgg----------gcCGGGTGTGGCAGGCATCAGACCGATTC----------------------AGACAAGGAGCTCAGAGCCGCTG--GCACAGGAGGAGGGAGTGGCAGCAATATTCCAGCTCGGAGAGGCCACCCCCGAGGCAGACCCAAGGACGGGATGG-GTTCCAGGCAGAGGGGACGGTCC--ACAAAGGCAGGGAATGCCCTGGGAAGGAGACTCCAGTTCCACACAGGCCTCCTGCAGAACCTAC-CCCGTG s panTro1.chr19 82398558 339 - 82489036 TACAAACAGCTCCTGAAAGCAA---TAGGAGAGAGGGATTCCTGTGCCC-TTTCCACAGTGGGGAACCTGATGC--------------------------TGCCACAGAGCT-------GGAAT---------TGGAAGCCCAGG-CTGTCTG-CCTCCCAGCCTGG----------GCCGGGTGTGGCAGGCATCAGACCGATTC----------------------AGACAAGGAGCTCAGAGCCGCTG--GCACAGGAGGAGGGAGTGGCAGCAATATTCCAGCTCGGAGAGGCCACCCCCGAGGCAGACCCAAGGACGGGATGG-GTTCCAGGCAGAGGGGACGGTCC--ACAAAGGCAGGGAATGCCCTGGGAAGGAGACTCCAGTTCCACACAAGCCTCCTGCAGAACCTAC-CCCGTG s canFam1.chr9 38065011 415 + 53642819 TAAAGAAGGCtcctgaaaaccatgctgagaaagaggtattattatgcccttttttatagtggagaacctgatgcccacagaggataagtaacctgctgggctccacagagcttaggcaagggatggagcggcctggggacccaggcctgtctgaccccagagccAGGCCGGCAGACAGCAAGGGGAGGCCGGCATGGGGCTGAGTCTAAATGGGCAGCACAGTGAGGAATATGAGGA-CCCGGAGCTGCAGAAGCCCA-GAGAGAGGAGGGGAGGCAGTGTGGCAGCTGGGACGTACCACCCAC-AGGCATTTCTAGGA--GAGATGGCATTCCAGGTGGAGGGCAGGGCCTGGGCAAAGGCAAGGAGGTATGTGGGAGGGCG--TCCAGCCCCA---GCACCTCCTGCAGAACCTCCACCCCAA a score=1608.0 s hg17.chr17_random 189982 5 + 2618010 GCATC s panTro1.chr19 82398897 5 - 82489036 GCATC s canFam1.chr9 38065426 5 + 53642819 GCATA s galGal2.chr19 6610291 5 + 9463882 GCTTC a score=5547.0 s hg17.chr17_random 189987 23 + 2618010 GGGCTNGGAGGTGGGG-TCCTCCT-- s panTro1.chr19 82398902 22 - 82489036 GGGCT-GGAGGTGGGG-TCCTCCT-- s mm5.chr11 46255460 22 - 121648857 AGTCT-GGGGGCAGGA-TGCTTCA-- s rn3.chr10 47594472 23 - 110733352 AGTCC-GGGGGTGGGGATGCTCCT-- s canFam1.chr9 38065437 22 + 53642819 GACCT-GGAGGCGAGG-AGCCTCC-- s galGal2.chr19 6610296 23 + 9463882 -GGGA-GGGGACGGGG-GCTCCCCGT a score=56385.0 s hg17.chr17_random 190010 392 + 2618010 tggatgagcctcctacggctgctgcaacaaatgaccacaaacttcgtggcttaaagcagcgcgtttactctcggactgctctgcaggttagaagtccagcagtggtctctct------ctgggcta-aaatcaaggtgtcggcaaggctgcattccttctggagcccggggagccca------cagt--ttcctagctccttccagcttctagaggccatcggccctcctgggcttgtggccccttcctccaccttcac---------agcgggccccattgcatctctctggcccccttccttggtgacgtccctgactg-----tcttctctgtc-cattcttctgcttttaa--gaaccctgtgaccacat-tgggccacccaacaatctaggataatctccctattctaatgtcagctcat s panTro1.chr19 82398924 380 - 82489036 tggatgagcctcctatggctgctgcaacaaatgaccacaaacttcgtggcttaaagcagcgcgtttactctcggactgctctgcaggttagaagtccaacagtggtctctct------ctgggcta-aaatcaaggtgtcggcaaggctgcattccttctggagcccggggagcc--------cagt--ttcctagctctttccagcttctagaggccattggccctcctgggcttgcggtcccttcctccaccttcac---------agcgggccccattgcatctctctggcccccttccttggtgacgtccctgactg-----tcttctctgtc-cattcttctgcttttaa--gaaccctgtga-----------ccacccaacaatctaggataatctccctattctaatgtcagctcat s mm5.chr11 46255482 315 - 121648857 CACATTAATTTTCTGTGGTTACCTCAACAAGTTCTCAC-CGCTTGGCCATTTAAACATGCCCATCGCCTGCCTCCCTGGTCTGCTGGTCATCAGCCAGGCA--GGTTGCACTGACTGACTGGACCAGAAGTCGAGATGCCAGCAGGACTGTGTCC-------AGTCTGGGGA-----------CAGTCATTCCCTCTCCTGTCCAA---ATAGAGGCT---------------------GCACACTTCCCCAGCTG------------AGCAGGCC------------------------------------------CTG-----TCTCTCCTGAC-TCTACTTTTACTGCTAG--TGACCTTGTGACCACA---GGGCTATTTGAATGCCTCCAATAAGCTTGCTGGTTTTAAGTCAGCTAAA s rn3.chr10 47594495 322 - 110733352 CACATTAGCTTTCTGTGGTTTCCTCGACAAATTCCCAC-CGCTTGGCTATTTAAACATGCCCGTCACCTCC----CTGGTCTGCTGATTGTCAGCCAGGCA--GGTTGTGCT----GATTGGACCAGAAGTCAAGATGCCAGCAGGACTGTGTCC-------ATTCTGGGGA-----------CGATCATCCCCTCTCCTTTCCAA---GTAGAGGCT---------------------GCACACTTCCCCAGCTGAGCTCCCAGCTGAGCTAGTC------------------------------------------CTG-----TCTCTCCTGGC-TCCTCTCTTGCTGCTAAATGACCCCTGGGACCACA--GGGGCCTTTCGCACACCTCCAGAAGGCTTGCTGGTTTTAAGTCAGCTAAT s canFam1.chr9 38065459 380 + 53642819 TCTTttagtgtcctagggctgcagtagccagtcatc---aactgagtggctt-gccacacacattacttatcttccagtgctgcaggtttgaag-ctggcacagctcctacc------cgggtc---aactccag-tgtggg--gggctgcagtcc------attctgggggctccaggagagaagcaattcccatccttttccagcacctagaggctacccacatcgctcaactctg-gccagttcctccattttc-----------caccagtg--------tccacctggtacctctccctccttacgtgtccccctgatgctcctctcctgcctccctcttctgctttcaa--aggccctataatcacgtgggacctgcccagatcacctagataatctccGTACATTTAAGTCAGCCCAg a score=1863.0 s hg17.chr17_random 190402 11 + 2618010 taccaacccta s panTro1.chr19 82399304 11 - 82489036 taccaacccta s mm5.chr11 46255797 11 - 121648857 TAACAGTGTCG s rn3.chr10 47594817 11 - 110733352 TAACAATGCAG a score=6955.0 s hg17.chr17_random 190413 35 + 2618010 agtccacctgcag-cctcagtccacttggcc-atgtt s panTro1.chr19 82399315 35 - 82489036 agtccacctgcag-cctcagtccacttggcc-atgtt s mm5.chr11 46255808 37 - 121648857 GTTTCACCTTCTGCCCTCAGGTCCCTTCCCCTGTGTC s rn3.chr10 47594828 33 - 110733352 GTTTCACCTG----CCTCAGGTCCCCTCCACTGTGTC s canFam1.chr9 38066042 35 + 53642819 AGCCGATTAACAA-CCTTAATTCCCCTTGGC-ATATT a score=445.0 s hg17.chr17_random 190448 35 + 2618010 gataacacattcacaggctccaagatgagcacgtg s panTro1.chr19 82399350 35 - 82489036 gataacacattcacaggctccaagatgagcacgtg s mm5.chr11 46255846 33 - 121648857 GATAGTACCTCTGTGAATGGAAGGACCAGGCC--T s canFam1.chr9 38066077 22 + 53642819 -------------TAGGTCCCAGGGACCAGGCAAG a score=5504.0 s hg17.chr17_random 190483 34 + 2618010 gccatctctgggggccattgttctgtttgataca s panTro1.chr19 82399385 34 - 82489036 gccatctctgggggccattgttctgtttgataca s mm5.chr11 46255879 18 - 121648857 GCCACCTTTGAGGCC----------------ACA s rn3.chr10 47594886 18 - 110733352 GCCAGCTCTGAGGCC----------------ACA s canFam1.chr9 38066099 32 + 53642819 GCCGTCTTTGGGACA--TTATTCTGCCCCTCGGG a score=-2569.0 s hg17.chr17_random 190517 15 + 2618010 CACTTTGATGCT---AAT- s panTro1.chr19 82399419 15 - 82489036 CACTTTGATGCT---AAT- s mm5.chr11 46255897 18 - 121648857 CTCATTCAGGATCAAAAT- s rn3.chr10 47594904 18 - 110733352 CTCACTCAGGACCAGAAT- s canFam1.chr9 38066131 15 + 53642819 CTCCCAGATGCT---CAG- s danRer1.chrUn 153137071 16 + 367113659 CATTTTGATTGC---TGTT a score=0.0 s hg17.chr17_random 190532 7 + 2618010 AAGATCA a score=3853.0 s hg17.chr17_random 190532 5 + 2618010 AAGAT s panTro1.chr19 82399434 5 - 82489036 AAGAT s mm5.chr11 46255915 5 - 121648857 AAGAT s rn3.chr10 47594922 5 - 110733352 AAGAT s canFam1.chr9 38066146 5 + 53642819 AGCAT s fr1.chrUn 341586791 5 - 349519338 AATGT a score=494.0 s hg17.chr17_random 190537 2 + 2618010 CA s panTro1.chr19 82399439 2 - 82489036 CA s mm5.chr11 46255920 2 - 121648857 CA s rn3.chr10 47594927 2 - 110733352 CA s canFam1.chr9 38066151 2 + 53642819 CT s galGal2.chr19 6610341 2 + 9463882 CC s fr1.chrUn 341586796 2 - 349519338 TC a score=191004.0 s hg17.chr17_random 190539 109 + 2618010 TTTTTCTCTTCTCCAGGCAAATAAGCTCAGAACAAAAACTCTCCGTAACACTCTGAACCCCACATGGAACGAGACCCTCACTTACTACGGGATCACAGATGAAGACATG s panTro1.chr19 82399441 109 - 82489036 TTTTTCTCTTCTCCAGGCAAATAAGCTCAGAACAAAAACTCTCCGTAACACTCTGAACCCCACATGGAACGAGACCCTCACTTACTACGGGATCACAGATGAAGACATG s mm5.chr11 46255922 109 - 121648857 CTCTGTCTTTTTCCAGGCAAATAAGCTCAGAACAAAAACTCTTCGGAACACCCTGAACCCCTCGTGGAACGAGACCCTCACTTATTACGGAATCACGGATGAGGACATG s rn3.chr10 47594929 109 - 110733352 CTCTGTTTTTTTCCAGGCAAATAAGCTCAGAACAAAAACCCTACGGAACACTCTGAACCCCTCCTGGAACGAGACCCTCACCTATTACGGGATCACGGATGAGGACATG s canFam1.chr9 38066153 109 + 53642819 TTTCTGCTCTCACCAGGCAAATAAACTCAGAACGAAAACTCTCCGAAACACTCTGAACCCCACATGGAACGAGACCCTTACTTACTACGGGATCACGGATGAAGACATG s galGal2.chr19 6610343 109 + 9463882 TCCATTGCTTTTCCAGGCAAATAAGCTGAGGACCAAAACGCTGCGCAACACTCTGAACCCCACCTGGAATGAGACCCTCACCTACTATGGCATCACCGACGAGGACATG s fr1.chrUn 341586798 109 - 349519338 TCCCTTTCTTTTCCAGGCCAATAAACTTAGAACCAAGACCCTGCACAACACGCTGAACCCTGTATGGAGCGAGACCCTGACCTACTACGGCATCACCGACGAAGACATG s danRer1.chrUn 153137087 109 + 367113659 TTTGTCAATCTCACAGTCTAACAAGCTACGAACAAAGACGCTTCGTACCACCTTGAATCCTGTGTGGAACGAGACCCTTGTTTATCATGGCATCACTAACGAAGACATG a score=15431.0 s hg17.chr17_random 190648 11 + 2618010 ATCCGCAAGAC s panTro1.chr19 82399550 11 - 82489036 ATCCACAAGAC s mm5.chr11 46256031 11 - 121648857 GTCCGAAAGAC s rn3.chr10 47595038 11 - 110733352 ATCCGAAAGAC s canFam1.chr9 38066262 11 + 53642819 ATTCGAAAGAC s galGal2.chr19 6610452 11 + 9463882 ATCCGCAAAAC s fr1.chrUn 341586907 11 - 349519338 GTCCGAAAAAC a score=11971.0 s hg17.chr17_random 190659 43 + 2618010 CNNCTNGNGNGTNNGGG----TGAGGGTCCCAGGCCGCCTGCTNCCC s panTro1.chr19 82399561 35 - 82489036 CC---TGCG---GTGGG----TGAGGGTCCCAGGCCGCCTGCT--CC s mm5.chr11 46256042 35 - 121648857 CC---TGAG---GTGGG----TGAGGGCCCCTG--TGCCTACACCCC s rn3.chr10 47595049 35 - 110733352 CC---TGAG---GTGGG----TGAGGGCCCCTG--TGCCTACACCCC s canFam1.chr9 38066273 37 + 53642819 CC---TGCG---GTGGG----TGAGGGCCTCAGACGCCCTGGTCCCC s galGal2.chr19 6610463 34 + 9463882 GC---TGCG---GTAGGGCCTTGGGGACCCCCG-------GCACCTC a score=1540.0 s hg17.chr17_random 190702 4 + 2618010 NTCC s panTro1.chr19 82399596 4 - 82489036 CTCC s mm5.chr11 46256077 4 - 121648857 ACCC s rn3.chr10 47595084 4 - 110733352 ACCC s galGal2.chr19 6610497 4 + 9463882 CCCC a score=-474.0 s hg17.chr17_random 190702 14 + 2618010 NTCCCNCNAANCNC-- s galGal2.chr19 6610497 14 + 9463882 --CCCCTGCACCACCC a score=-2161.0 s hg17.chr17_random 190706 10 + 2618010 --CNCNAANCNC- s panTro1.chr19 82399600 6 - 82489036 --C-CAA---CC- s galGal2.chr19 6610501 10 + 9463882 TGCACCA---CCC a score=442.0 s hg17.chr17_random 190716 174 + 2618010 CCCACTCCCAC---------CCGGCTTTTCCTAATGAAGGCAGGACTGGAGGGTCAGATGGTCCC-----CTGTGGGTTCAACCTCATG--CCAGCAACTCCAGCCTGGGGGCTTG---AAGAAAGGCAGAAAGGTCT-----GCCCACGCCAATGGAGCCTGGTGGGTGGAAAAGGG-----TCACCCTGGCCCCAGTCCCC s panTro1.chr19 82399606 174 - 82489036 CCCACTCCCAC---------CCGGCTTTTCCTAATGAAGGCAGGACTGGAGGGTCAGATGGTCCC-----CTGTGGGTTCAACCTCATG--CCAGCAACTCCAGCCTGGGGGCTTG---AAGAAAGGCAGAAAGGTCT-----GCCCATGCCAATGGAGCCTGGTGGGTGGAAAAGGG-----TCACCCTGGCCCCAGTCCCC s canFam1.chr9 38066310 51 + 53642819 CACGCCCCTCC---------CCAGCCTCACCT-------------------------------------------------------------------------CTGGGGCC----------------------------------------------------------------------CCACTCTGCCCCCAATGTCC s galGal2.chr19 6610511 200 + 9463882 ACCATTCCTCTTTGGAGCCACGGGGCCCACCT--TTTGGGAGGGAGCAGTGAATCCGTTGGCAATAAGAGATGTGTGTTCGGATGTATTTCTCATCATCTCTGG-TTGAGGTTTGGTCATCGCACGGCATCGCGGCGCTGGGAGAGCATCCCTGTGCAGTCTGATGGGGATCCGTGTGCTGTCATATCCCGGCCCCATCCCAT a score=10762.0 s hg17.chr17_random 190890 113 + 2618010 TGAAGGTGCTTCCTGGGGCCTCTCAGGGTGCTGGAGGTGGTTCCCTCCAGAGAACCGGCTCTCCCAGCCTCCTGGCTACTCCTGGCACTGGTTCTGCCTTCTCCTGTCCCCTC s panTro1.chr19 82399780 112 - 82489036 TGAAGGTGCTTCCTGGGGCCTCTCAGGGTGCTGGAGGTGGTTCCCTCCAGAGAACCGGCTCTCCCAGCCTCCTGGCTACTCCTGGCACTGGTTCTGCCTTCTCCCG-CCCCTC s galGal2.chr19 6610711 80 + 9463882 CGTGGATCCATCCTGCAGCC-----------------------------AAAACCCGGCCCTGCT-GCTCCAAAGCTGCCCCCGGAGCTGA---TGGTTTCCCCCATGCCCGC a score=8142.0 s hg17.chr17_random 191003 87 + 2618010 TTCCAACCTGAGGACACTTGTCCATGAGGACAGTGCCTGATATCGTGCCACACTCTGCCCCTGTCAGGGCCCAGGCATCTTGTGCGT s panTro1.chr19 82399892 87 - 82489036 TTCCAACCTGAGGACACTTGTCCATGAGGACAGTGCCTGATATGGTGCCACACTCTGCCCCTGTCAGGGCCCAGGCATCTTGTGCGT a score=1173.0 s hg17.chr17_random 191090 4 + 2618010 CTCC s panTro1.chr19 82399979 4 - 82489036 CTCC s mm5.chr7 114321968 4 + 133051633 CTCC a score=1240.0 s hg17.chr17_random 191094 11 + 2618010 CACCC------CAGACC-- s panTro1.chr19 82399983 11 - 82489036 CACCC------CAGACC-- s mm5.chr7 114321972 17 + 133051633 CACCCGTTTTACAGATG-- s fr1.chrUn 341588529 13 - 349519338 CACCT------CAGGCTCC a score=-253.0 s hg17.chr17_random 191105 14 + 2618010 AGGGCAGGGCTTGG------- s panTro1.chr19 82399994 14 - 82489036 AGGGCAGGGCTTGG------- s mm5.chr7 114321989 12 + 133051633 AGGT--GAACTTAG------- s galGal2.chr19 6614314 14 + 9463882 AAGGGAAGCATTGG------- s fr1.chrUn 341588542 21 - 349519338 TGGGAAGTGTTTCGTCCCAGT a score=-9983.0 s hg17.chr17_random 191119 60 + 2618010 GGCAGGAG-----AAGCCAGGGCTGGCCCTACCTG--CGCACACCTCCACCATGCCCAGTGCGTCTG s panTro1.chr19 82400008 60 - 82489036 GGCAGGAG-----AAGCCAGGGCTGGCCCTACCCG--CGCACATCTCCACCATGCCCAGTGCGTCTG s mm5.chr7 114322001 52 + 133051633 GGCAG---------AGCTGGGACTGGTCCGA------GGACCTTTTTCTCCCTCCGGAGTGGGGCTC s canFam1.chr9 38066413 22 + 53642819 AGCAGGAG---------------------------------CACCTC------------TGTGTCTG s galGal2.chr19 6614329 49 + 9463882 GGGAGAGG------AGGCAGAGGGACCCCCA------GTGATGTCCCCA------GCAGCAGGGACA s fr1.chrUn 341588563 62 - 349519338 GTCAGAAGGTAACGGGCTCAGGCTGGAGCTGTCTGCTACTAAACCTC-----TGCCTGTCGTCTCTG a score=0.0 s hg17.chr17_random 191179 7 + 2618010 AGGCACT a score=1862.0 s hg17.chr17_random 191179 3 + 2618010 AGG s panTro1.chr19 82400068 3 - 82489036 AGG s mm5.chr7 114322053 3 + 133051633 AGA s canFam1.chr9 38066435 3 + 53642819 AAG s galGal2.chr19 6614378 3 + 9463882 AGG a score=951.0 s hg17.chr17_random 191182 4 + 2618010 CACT s panTro1.chr19 82400071 4 - 82489036 CACT s mm5.chr7 114322056 4 + 133051633 TACC s rn3.chr10 47595114 4 - 110733352 CACT s canFam1.chr9 38066438 4 + 53642819 AGCT s galGal2.chr19 6614381 4 + 9463882 AGAT a score=1212.0 s hg17.chr17_random 191186 14 + 2618010 GGCTGTGCCC--CTCA- s panTro1.chr19 82400075 14 - 82489036 GGCTGTGCCC--CTCA- s mm5.chr7 114322060 12 + 133051633 --CAGGGGCC--CTGA- s rn3.chr10 47595118 14 - 110733352 GACTGTGGAA--GCCA- s canFam1.chr9 38066442 14 + 53642819 GGCCATGCCT--CCCG- s galGal2.chr19 6614385 16 + 9463882 AGCTGTGCCCTACTCA- s fr1.chrUn 341588625 15 - 349519338 GACTCCGCCC--ACTCT a score=1690.0 s hg17.chr17_random 191200 2 + 2618010 CC s panTro1.chr19 82400089 2 - 82489036 CC s mm5.chr11 46256124 2 - 121648857 CC s canFam1.chr9 38066456 2 + 53642819 TC s galGal2.chr19 6614407 2 + 9463882 CC s fr1.chrUn 341588640 2 - 349519338 CT a score=-742.0 s hg17.chr17_random 191200 2 + 2618010 CC- s canFam1.chr9 38066456 2 + 53642819 TC- s galGal2.chr19 6614407 2 + 9463882 CC- s fr1.chrUn 341588640 2 - 349519338 -CT a score=-79.0 s hg17.chr17_random 191202 5 + 2618010 ACCGC s galGal2.chr19 6614409 5 + 9463882 TGTGC a score=2119.0 s hg17.chr17_random 191202 5 + 2618010 ACCGC s panTro1.chr19 82400091 5 - 82489036 ACCGC s mm5.chr11 46256126 5 - 121648857 ATCGC s rn3.chr10 47595132 5 - 110733352 ATCGC s galGal2.chr19 6614409 5 + 9463882 TGTGC a score=5514.0 s hg17.chr17_random 191207 3 + 2618010 CCC s panTro1.chr19 82400096 3 - 82489036 CCC s mm5.chr11 46256131 3 - 121648857 CCC s rn3.chr10 47595137 3 - 110733352 CCC s galGal2.chr19 6614414 3 + 9463882 TCC s fr1.chrUn 341588642 3 - 349519338 CCC s danRer1.chrUn 153139759 3 + 367113659 CCC a score=1407.0 s hg17.chr17_random 191207 3 + 2618010 CCC s galGal2.chr19 6614414 3 + 9463882 TCC s fr1.chrUn 341588642 3 - 349519338 CCC s danRer1.chrUn 153139759 3 + 367113659 CCC a score=259270.0 s hg17.chr17_random 191210 138 + 2618010 CTCTAGGATCTCTGTGTGTGACGAGGACAAATTCCGGCACAATGAGTTCATCGGGGAGACACGTGTGCCCCTGAAGAAGCTGAAACCCAACCACACCAAGACCTTCAGCATCTGCCTGGAGAAGCAGCTGCCGGTGAG s panTro1.chr19 82400099 138 - 82489036 CGCTAGGATCTCTGTGTGTGACGAGGACAAATTCCGGCACAATGAGTTCATCGGGGAGACACGTGTGCCCCTGAAGAAGCTGAAACCCAACCACACCAAGACCTTCAGCATCTGCCTGGAGAAGCAGCTGCCGGTGAG s mm5.chr11 46256134 135 - 121648857 C---AGGATCTCCGTGTGTGATGAGGACAAATTCCGCCACAATGAGTTCATTGGAGAGACTCGGGTGCCCCTGAAGAAGCTGAAGCCCAATCACACCAAGACATTCAGCATCTGCCTGGAGAAGCAGCTGCCGGTGAG s rn3.chr10 47595140 135 - 110733352 C---AGGATCTCCGTGTGTGACGAGGACAAATTCCGCCACAACGAGTTCATCGGAGAGACTCGAGTGCCCCTGAAGAAGCTGAAACCCAACCACACCAAGACATTCAGCATCTGCCTGGAGAAGCAGCTGCCGGTGAG s canFam1.chr9 38066458 138 + 53642819 CTCCAGGATCTCCGTGTGTGACGAGGACAAATTCCGTCATAACGAATTCATTGGGGAGACGCGCGTGCCCCTGAAGAAGCTGAAAGCCAACCACACAAAGACGTTCAGCATCTGCCTGGAGAAGCAGCTGCCGGTGAG s galGal2.chr19 6614417 138 + 9463882 TCCCAGGATCTCTGTCTGCGACGAGGACAAGTTCCGCCACAATGAGTTCATCGGGGAGACGCGGATCCCTCTGAAGAAGCTGAAGCCCAACCAGACCAAAAACTTCAGTATCTGCCTGGAGAAGCAGCTGCCGGTGAG s fr1.chrUn 341588650 138 - 349519338 CGACAGGATCTCGGTGTGCGACGAGGATAAATTCCGCCACAATGAGTTCATCGGCGAAACACGAATCCCTCTGAAGAAGCTGAAGCCCAACCAGACCAAAAACTTCAACAACTGCTTGGAGAAACAGTTACCTGTAAG s danRer1.chrUn 153139762 138 + 367113659 TGGCAGGCTTTCTGTCAGCGATGAGGACAAGTTCGGCCATAACGAGTTTATCGGCGAGACGCGGGTGGTCTTGAAAAAACTGAAGCTGAACCAGAAGAAGACCTACAACGTGTGTCTGGAGAGAGTGATTCCGGTAAG a score=-673.0 s hg17.chr17_random 191348 3 + 2618010 -AGG s panTro1.chr19 82400237 3 - 82489036 -AGG s mm5.chr11 46256269 3 - 121648857 -TGG s rn3.chr10 47595275 3 - 110733352 -TGG s canFam1.chr9 38066596 3 + 53642819 -TTG s galGal2.chr19 6614555 3 + 9463882 -TGG s danRer1.chrUn 153139900 3 + 367113659 CTG- a score=91.0 s hg17.chr17_random 191351 1 + 2618010 a s danRer1.chrUn 153139903 1 + 367113659 A a score=12658.0 s hg17.chr17_random 191351 120 + 2618010 a-------------------------------ttgattgagca-------------------cctgctgtgtacc-------tggctcggtggcaggtgctggga---aggcagAACTTCCTGCCTG---TGATGGGAC---------------TCATGAggggcaga---------gtg--------------------------agaggggaggggagaccggggaggtga s panTro1.chr19 82400240 120 - 82489036 a-------------------------------ttgattgagca-------------------cctgctgtgtacc-------tggctcggtggcaggtgctggga---aggcagAACTTCCTGCCTG---TGATGGGAC---------------TCATGAGGGGCAGA---------GTG--------------------------AGAGGGGAGGGGAGACCGGGGAGGTGA s mm5.chr11 46256272 178 - 121648857 AAGAAGGCTCTGGCACCGCAGCCGTGCAGGAGTTTACTGAGCA-------------------GCTACTATGTGACAATACTGTGTTTCAGGCACAGTTGCAGGGAGATGGAAGGAACTTGCTTCCTG--TTGATGGCACAGGAGTGGGGATAATTCAT--GGAGCAGA---------GAGCAT-----------------------AGTGGAGGGGGCAAGTCTAGGAGGGGA s rn3.chr10 47595278 151 - 110733352 G---------------------------GGAGTTTATTGAGCC-------------------ACTACTGTGTGTCAGTACTACATTCCAGGCACAGTTACAGGGCAATGGAAGGAACCTGCTGCCTG--TGGATGGCACAGGAGTAGGGCTAATTCAT--GAAGTAGA---------GAGTAC-----------------------AGTGGAGGGGGCAAGTCTAGGAGGGGA s canFam1.chr9 38066599 179 + 53642819 G---------------------------GGATGGGGCTCCGcaggctgcccaggctgcccaggctgctctgtgcc-------tggcacagcttcaggtgctgggg---gaacagaccacaatccctgccctcgtggagcttgggcag-------------gagacagattcaaggacgtgaatcacccaaacagcctgtgttagacagtgatcaggg----tcacagagaaaa a score=5776.0 s hg17.chr17_random 191471 92 + 2618010 gcatggagagtcaaggggngt--gngnagng--tgaggaaggaccctggctttcactctgagtggccacgggagggtgctaagctgagggatcatg s panTro1.chr19 82400360 88 - 82489036 GCATGGAGAGTCAAGGGG-----GTGGAG-G--TGAGGAAGGACCCTGGCTTTCACTCTGAGTGGCCACGGGAGGGTGCTAAGCTGAGGGATCACG s canFam1.chr9 38066778 74 + 53642819 GCAT-GAGAGCCCAGTGGTTTAGAtggag-gtttgggggatattcctggc----------agaggaaacagca-agtaccaagcctg--------- a score=13460.0 s hg17.chr17_random 191563 220 + 2618010 ggggatgacattttaccaggctcgctggc-----ctgggctcaggatggcttgaagaagagggaggagagggcaggaggcctggggagatnggggagagatgggcacaaccctggcctgaccttggcagcggtagg-------agggcttgattctgaaccggatgtgcaggcagcag---ataggac------------gtccttgggt---------gagggaa----------------gggcagatccgaggtttggggcctgagcca s panTro1.chr19 82400448 219 - 82489036 GGGGATGACATTTTACCAGGCTCGCTGGC-----CTGGGCTCAGGATGGCTTGAAGAAGAGGGAGGAGAGGGCAGGAGGCCTGGGGAGAT-GGGGAGAGATGGGCACAACCCTGGCCTGACCTTGGCAGCGGTAGG-------AGGGCTTGATTCTGAACTGGATGTGCAGGCAGCAG---ATAGGAC------------GTCCTTGGGT---------GAGGGAA----------------GGGCAGATCCGAGGTTTGGGGCCTGAGCCA s rn3.chr10 47596941 121 - 110733352 GGGGATGTTATTTTA-GAAGCTCCCTGCCT---GCTGGGCTCAGAATGGCCAGAAGCAGAGAGAGGCAAGGGCTGGAG-----------------------------------------------------------------------------------------CCAAGAACCAG---ATAGAAC------------GGGCTGGATG---------GAGACAA---------------------------AGATTTGTGGCC------- s canFam1.chr9 38066852 261 + 53642819 ttggaggcccgagcaagaggcccactgtgtggagcagggagcaggatgggactaggtcctaggaggtgagatcagagG--TTGGTGGAGT-GGAGGGAGCTGGGAGGGACTCT----TGACCGTAAGTGAGGTGGGCCACAGAGGGACTAGGGACTATGCCGA----GCAGGGACTAGGGCATCTGACTATTTTAACAGGGTCGTTGGGTGCAGACCGGGAGGGAAAAGGGGCTAAGGATGGGGACGGTCATGAGGGGATGAGCCTGACCCA a score=5372.0 s hg17.chr17_random 191783 79 + 2618010 ctgaagcctgaggggctgtttgctgcactcagaggactcagcagggaccacgggtggacaggacgcgcaaggagcacgc s panTro1.chr19 82400667 79 - 82489036 CTGAAGCCTGAGGGGCTGTTTGCTGCGCTCAGAGGACTCAGCAGGGACCACGGGTGGACAGGACGTGCAAGGAGCACGC s rn3.chr10 47597062 44 - 110733352 -----------AGGGCAGTTCCTGGTCCGGGGAGCCTTCACTAAGGACGAC---------------TCAA--------- a score=1092.0 s hg17.chr17_random 191862 2 + 2618010 tt s panTro1.chr19 82400746 2 - 82489036 TT s mm5.chr11 46257729 2 - 121648857 TT s rn3.chr10 47597106 2 - 110733352 TT a score=123998.0 s hg17.chr17_random 191864 558 + 2618010 ggaacatgttagacctgagt-gcctgtgagatacgcagaggagacagcagagtaTCCTTTCCTAGAAATGGC-ATTTGTCTCAACGTTATGTCAGAACAGATTT-GCCCTCGGCCTGCTCCAGCAGCTACGCCCTCT--GAGTCTTG---------GTCTCTATGTCCCTCT--TCCCTCCCCCATCCTCCCTTGTCTAT----------GGCCTCACCTTCACCTGGTTCATAGG-GCTGGTGA-----AGCCAGGAGTCCCCCGTGCCACTGGGGTCAAG-AGAAATCCTGGGGCCTCAGC-CTCCCAGCGTTCAGGACACAGGCGGAGGCATGGTCCCCTCGATGGCACGTTGTCCCCCTAAGAGGACTGGGCAAGGGGCAAGTTTGGGAGGACAGAGCCCGGCGGCTGTCCCCAGTGTACCCAGCCCCAGTGG-----GGCCCGGGGACGTGGACTCACCTCGAGCTTAGCCCAAGTCAAGCCC-CGGGGGCGAGTCAGC--CTGAGGCCACGGCTTCTTCCCAGAATCCCAGTTACTTT-TGCAGAATTTGATCCAATTTTATTC-CTTGTCACATTCTCTCCCCCTC--AGA--CATTTG s panTro1.chr19 82400748 559 - 82489036 GGAACATGTTAGACCTGAGT-GCCTGTGAGATACGCAGAGGAGACAGCAGAGTATCCTTTCCTAGAAATGGC-ATTTGTC-CAACGTTATGTCAGAACAGATTT-GCCCCCGGCCTGCTCTAGCAGCTACGCCCTCT--GAGTCTTG---------GTCTTTATGTCCCTCT--TCCCTCCCCCATCCTCCCTTGTCTAT----------GGCCTCACCTTCACCTGGTTCACAGG-GCTGGTGA-----AGCCAGGAGTCCCCCATGCCACTGGGGTCAAG-AGAAATCCTGGGGCCTCAGC-CTCCCAGCGTTCCCGACACAGGCGGAGGCACGGTCCCCTCGATGGCACGTTGTCCCCCTAAGAGGACTGGGCAAGGGGCAAGTTTGGGAGGACAGAGCCCGGCGGCTGTCCCCAATGTACCCAGTCCCAGTGG-----GGCCCGGGGACGTGGACTCACCTGGAGCTTAGCCCAAGTCAAGCCC-CGGGGGCGAGTCAGC--CTGAGGCCACGGCTTCTTCCCAGAATCCCAGTTACTTT-GGCAGAATTTGATTCAATTTTATTC-CTTGTCACATTCTCTCCCCATC--AGATTCATTTG s mm5.chr11 46257731 501 - 121648857 GGAGCGTGTTAGGCCAGGAG-AGCCATGAGATGCCCAGAGGAGACAGCACATAATTCTCTCTGAGACATTGT-AATTGTT-CAGCATGATGTCATGACAAATTTGGCCCCCAGTTGTCTTCAGCAGCTGAGCCCTCCCAGAGCCTTG---------GTGCCTGTTCCTTTCCAATCACTTTCCTGTCTGCCTTCTCACTT----------CATCTCTCCTTCCTCTGGTTTATAGG-GCAGAGGG-----TCTAAGGAG-CCCCAGTG---CTCAAGGCTAA-AGACAGGCTAAGCCCTTTAT-CTCCTAATG-TCAGGACATGT---------CTGTTTACTCAAAG------------CCTAAG----CCAAACAGAGG-----------------AATCCCAGCATTTAATCCCTGTGTG-CCAGGCCCGGCAGGACTAGACCCTGGAACATGGCTGCTCCAAAAGCTGGACCCAAGTCCAGCCCTTAGAATCCAGCCAGCAGCTGAGACAGTGCCTTTGTGCGTGGATTTC----------------------TCAGACTGTATTCTCATGTCACATTCTCTCCAC-TC--GGG--TGCATG s rn3.chr10 47597108 485 - 110733352 GGAGCGCGTTAGGCCAAGAA-AGCCATGAGATGCCCAGAGGAGACAGCACATAATTCTCTCCTAGACATTGT-AATTGTT-CAGC---ATGTCAGGACAAATTTGGCCCCCAGTTGTCTTCAGCAGCTGATCTCTCCCAGAGCCTTG---------GTGCCTGTTCCTTTCCAATCAGTCTCCTGTTTGCCTTCTCGACT----------TATCTCTCCTTCCCCTAGTTCATAGG-GCAGAGGG-----TCCAGGGAG-CCCCAGTG---CTCAAGGCTGTCAGTCAAGCTAAGTCCTTTTCTCTCCCAGTGTCCAGGGCATGG---------CTGTCTTC------------------CCAAAG---CCTGAGCCAAGG------------AGAGGAAGCCCAGCATTTAACCTCTGTGTGCT-----------------AGGCCTGGGATATTGCTGCTCCAAAAGCTGGACCCAAGTCCAGCCCTTAGAATCCACCCAGC------------------AGCCGAGA----CAGTGCCTTCATGCATGGCTTTCTCAGACTGTATTCTCATGTCACATTCTCTCCAC-TC--AGG--TACATG s canFam1.chr9 38067308 545 + 53642819 NGAACACGACAGGCATGAGGCACCTGTGAGCTGCCTAGAGAAG--AGAAAATAATTCTTTCCTAGAAATTGCAATTTGTT-AAAAATCATATCCAAACCAATTTTGTCTCCTGTTGTCTGCAGCAGCTGAGCCTCCC--AAACTCTGTCCATGGGTGTCTCCCTTCCCCTCCCCTCCTGACCCCGTCCTCTCTCCCCTGCCTCTTTTGGAGGCCTGGCCTTGACCCTATTCAGAAGTGCAGGGAGGCATTGGCCAGGAGGCCCCAGGG---------TCCTG-AGAC--------CCTCCAGC-AGCCCAATGTTCAGGGCACAA------------TCCCCTTTTGAGGACATCTTCCCCCTAAGAGTCCTGGGCAGGGGAAAAGCTCAAGAGGACATAGCCCGGCAGCCAACCCATCCCTGCTGGGGCTTG---------GGCATGGGGACGAATGCTCAGTGCAGGCT-GGCCCAAGCCAAGCCC-TGGGAAAAAGTCTAC--CTGAGGCCAA-----CATCCTGG-----CTCTGCCTTTTTGCATAATTTGACCAAATTTTATTCCCTGGTCATATTCTTTCCTACTCATAGA--CCTTTG a score=22939.0 s hg17.chr17_random 192422 83 + 2618010 TGTGATGGATATAACCTTTCCTGTTTTA-----TTGTTAGTCACTAACCACAGGTAACCTGGTTTTTCCACATGGTCTATGTCACTTA s panTro1.chr19 82401307 83 - 82489036 TGTGATGGATATAACCTTTCCTGTTTTA-----TTATTAGTCACTAACCACAGGTAACCCGGTTTTTCCATATGGTCTATGTCACTTA s mm5.chr11 46258232 67 - 121648857 CGTGATGGGTAGAACTTTCCATGTC---------------------ACTTGAGGTGACCCAAATTTTCCAAATGGTGTACACCTTTCA s rn3.chr10 47597593 71 - 110733352 CATGATGGGTAGATCCTTCAATGTC-----------------ACTTGACAGAGGTGACCCAAATTTTCCAAATGGCCTACACCTCTCA s canFam1.chr9 38067853 79 + 53642819 CATTATAGGTAAGACCTTTTTTATTTTA-----TTATTAGTCACTAACCAAA----ACCCAGTTTTTCCAAATGATCAATGTGACTTA s danRer1.chr8 30191719 83 - 36410523 -----TTAGCAAGAAATTCACTTTCCTGAACGCGTGTTTGTGACTTCGCACTGATAAACTGTCCTGTTTAATGAGTTTATCGCATTCA a score=2353.0 s hg17.chr17_random 192505 6 + 2618010 AGAAAG s panTro1.chr19 82401390 6 - 82489036 AGAAAG s mm5.chr11 46258299 6 - 121648857 GGAGGG s rn3.chr10 47597664 6 - 110733352 GGAGGG s canFam1.chr9 38067932 6 + 53642819 TAAAAG a score=24380.0 s hg17.chr17_random 192511 275 + 2618010 Ncaacntcttaggaggccaanggcanggtgggtcatgaggtcaagagttcgagagagcctggccaacatggcgaaaccccgtctctgctaaaaataaaaaaattagccgggtgtgggggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgagaggcggaggttgcagtgagccgagattgcaccgttgcactccagcctgggtgacaagagcaagagcaagactctgtctc---aaaaaaaaaaaaaaaaG s panTro1.chr19 82401396 276 - 82489036 Gcaacatcttaggaggccaa-ggca-ggtgggtcatgaggtcaagagttcgagagagcctggccaacatggcgaaaccccgtctctgctaaaaataaaaaaattagccgggtgtgggggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacctgagaggcggaggttgcagtgagccgagattgcaccgttgcactccagcctgggtgacaagagcaagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaG a score=100.0 s hg17.chr17_random 192785 1 + 2618010 G s canFam1.chr9 38067938 1 + 53642819 G a score=62445.0 s hg17.chr17_random 192786 330 + 2618010 CAACACCAGCCCTGCCTTA---GTGTTCCTGAGTTTTCATCACTGGCATAAACAAACAACCACgtgggtatgtacgtggg-gtgtcagcgtgtgtgtgtgtgtgctcgtgtgtgaattgtgtgtaagagcatatgt--cagtacgtg---tctgtgtgcgacagtgtgtgtgtccacatgtgtggtgtgcgttcgtgaaagcatgtgcgtccctgtgcgtgGCCATGATCAGGGCGTTGCTGGATGCGCTACCGGCCCATTGGTGCCG--TTCAGGGACTCACAGTGACCGCAGGAGT-GCAG-CTGGGGATGCACCCCTGACAGTACAGCCACATTCTGGTG s panTro1.chr19 82401672 328 - 82489036 CAACACCAGCCCTGCCTTA---GTGTTCCTGAGTTTTCATCACTGGTATAAACAAACAACCACgtgggtatgtacgtggg-gtgtcagcgtgtgtgtgtgcgtgctcgtgtgtgaattgtgtgta--agcatatgt--cagtacgtg---tctgtgtgcgacagtgtgtgtgtccacatgtgtggtgtgcgttcgtgaaagcatgtgcgtccctgtgcgtgGCCACGATCAGGGCGTTGCTGGATGCGCTACCGGCTCATTGGTGCCA--TTCAGGGACTCACAGTGACCGCAGGAGT-GCAG-CTGGAGATGCACCCCTGGCAGTACAGCCACATTCTGGTG s mm5.chr11 46258305 291 - 121648857 CACTTCCAGCTCC----------CATATCCAAGTTCTGACCTCAGAT-TAAACAAAACTCTGTGCCTGTGGATGCATGAA-TGCTCATGGAGTATATGTG------CACATGTGCACTGTGTATA----CATGTGT----GTACATG---TATGTGGATAAGCATGCATGAG------TATGGGCTGAGTATTC-------CAGAGGCATCTC------TGGCCATTGCCGAGCCTCCCTTGAATTTGCTCCTTGCTCATTGGC-CAG--TTTGTGAGCACACAGGGACCACAGGGGTGGCAT-TTGGGGTGACCACTCTGGTTGTAAGGGCATAGTTTTGTG s rn3.chr10 47597670 273 - 110733352 CACTACCCGCTCC----------CATATCCGAGTTCTGACCTCAGATATAAACAAAACTC--------TGTGCACGCGG----------GTGTACGAATG---------CTATGGAGCATGTATG----CACATGC--ATGTACATG---TATGTGATTGAGCATGCATGAG------AATGTGTTGAGTATTC-------CGTG-GCATCTT------TGGCCATTGCTGAACCTCCCTCGAATTTACTCTTTGCTCAGTGGC-CAG--TTTGTGGATACACAGGGGCCACAGGAGTGGCAT-TTGGGATAACCACTCTGGTTGTAAGGACATATTTTTGTG s canFam1.chr9 38067939 304 + 53642819 CAACATCAGCTCCCTACTATGGTTGTTTCTGAGTTTTGAGCCCTGGCAC-AACAAACAGCCATG----TGGGGACGTGAGCGTGCAGGGATGTGTGTATGAGTGTATGCCTGTGAAA-GTGCAGGCGGGCATATTTTCAAGTATGTGGACTGCGTGCATGCCTGTGTGTTCGTGCACGTGGATGG---------GTGAGAGCATGGGCACGCC------TTGC----------------TTGAATTTGCTGGTAGCTCATTTGT-CTGGTTTCAGAGACATACGGTGACCACAGGAGT-GCAGTTTAGGGTATCTGCTCTGGCAGGAAAGACACATTTTGATG a score=696.0 s hg17.chr17_random 193116 4 + 2618010 GTAC s panTro1.chr19 82402000 4 - 82489036 GTAC s canFam1.chr9 38068243 4 + 53642819 CTAC a score=38187.0 s hg17.chr17_random 193120 457 + 2618010 ttttattattattattttttgagactgagtcttgctctgtcatccaggctggagttcagtggcaaaatctctgttcactgcaacctctacctcctgagttcaaacaattctcatgcctcagcctcctgagtagctgggactacaggcgtgtgccgccacgcctggttaatttttgtatatttggtagagatggggtttcaccatattgtccaggtgtctcaaactcctgaccttgaatgatccacctgcctcagccntcccaaagtgctgggattacaggtgtgcgccaccacgcctggctaattttggtatttttagtagagacgggggttcgccatgttggccaggcaagtctcaaactcctgacctccagtgatcctcctgccntcggcctcccaaagntgntngggattacaggcatgagcccctgtgccnagGNNCCTCTGGCGGNTAGGNT s panTro1.chr19 82402004 447 - 82489036 ttttattattatttttttttgagactgagtcttgctctgtcatccaggctggagttcagtggcaaaatctctgctcactgcaacctctacctcctgagttcaagcaattctcatgcctcagcctcccgagtagctgggactacaggcgtgtgccgccacgcctggttaatttttgtatatttggtagagatggggtttcaccatattgtccaggtgtctcaaactcctgaccttgaatgatccacctgcctcagcc-tcccaaagtgctgggattacaggtgtgcgccaccatgcctggctaattttggtatttttagtagagacgggggttcgccatgttggccaggcaagtctcaaactcctgacctccagtgatcctcctgcc-tcggcctcccaaag-tgct-gggattacaggtatgagcccctgtgcc-agg--ccTCTGGCGG-TAGG-- a score=22331.0 s hg17.chr17_random 193577 100 + 2618010 TTTNAGAATTTACAGTCTGCGAACATTATCTGTTTTAAGTCAATACTGAGCAAGACCCAGTGGTCTTCATATGAAACAACCCGAAGTA---CAATGTCCCACC s panTro1.chr19 82402451 99 - 82489036 TTTTAGAATTTACAGTCTGCGAACATTATCCGTTTTAAGTCAATACTGAGCAAGACCCAGTGG-CTTCATATGAAACAACCCGAAGTA---CAATGTCCCACC s mm5.chr11 46258596 94 - 121648857 TTTTAGATTTTATACTCTATTATATTTACTTGTTCTAAGTAAATA-----CATGGCTTAATGGCTGTCACGTGAAACAGTCCAGAGTATGGTAGTGTCC---- s rn3.chr10 47597943 96 - 110733352 TTTTAGGTTTTATATTCCTTTTATATTTCTTGTTCTAAGTAAATA-----CTTGGCTCAATGGCTGTCATGTGAAACAGCCCAAAGTATGGTAGTGCCATC-- a score=2623.0 s hg17.chr17_random 193677 30 + 2618010 CCTGAAAAAAGAGCTAAAAATATGCCTGCT s panTro1.chr19 82402550 30 - 82489036 CCTGAAAAAAGAGCTAAAAATATGCCTGCT s mm5.chr11 46258690 10 - 121648857 --------------------TCTGTCTGCC a score=25237.0 s hg17.chr17_random 193707 329 + 2618010 GGTTGGttgtttttttttttttttttatgnnagnatggagtctatngnnntncncccaggnctggnagtgcagtggcgcaatgtcggcttacttcaacctccgcctcccgggttcaagtgattcttctgcctcagcctcccaatagctgggattacagg----catgcgccaccacacccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcctgagctgctgacctcaggtgatctgcccgccttggcctcccanaangtgctggggttacaggcatgagtcactgtgcctggccCCTGCTGGTTTA s panTro1.chr19 82402580 318 - 82489036 GGTTGGTTGtttttttttttttttttatga---gatggagtctatg-----tcgcccagg-ctggaggtgcagtggcgcaatgtcggcttacttcaacctccgcctcccgggttcaagtgattcttctgcctcagcctcccaatagctgggattacaggggccca----ccaccacacccggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtcctgagctgctgacctcaggtgatctgcccgccttggcctccc--aaagtgctggggttacaggcgtgagccactgtgcctggccCCTGCTGGTTTA a score=819.0 s hg17.chr17_random 194036 3 + 2618010 TAT s panTro1.chr19 82402898 3 - 82489036 TAT s canFam1.chr9 38068369 3 + 53642819 TAT a score=5592.0 s hg17.chr17_random 194039 47 + 2618010 TGTTTAATTTTCACAC--CACACACACTGACACAAGCAGCACAGGGCAT s panTro1.chr19 82402901 47 - 82489036 TGTTTAATTTTCACAC--CACACACACTGACACAAGCAGCACAGGGCAT s mm5.chr11 46258700 37 - 121648857 TGTGAAAATCTCTGCT--CGTATACACT---ACATGCAGAGC------- s canFam1.chr9 38068372 48 + 53642819 TGTTTAATTTTCACACATCTCACAAACTAGCATAAG-ATCACTGTTTAG a score=75320.0 s hg17.chr17_random 194086 298 + 2618010 CAAGGCCCTCACACACAAAGCTCT--GCCTGAGCGGCAGATAGCGAGATCTCGCAGGCCTGGCctgatccaccaggaatggctgcc---tgagcactgtgttgaaaaggattctgaggtggcattggagcctagggcaaatgctaggatcgattagccatgtctgctctgggcgtgggaggtggcgaaggtggctggtggg--gcatgtatgtcttccctgCTCAACATCCCTGCTCACCTCACAGGAGTCTCATCTCCAGAAAGG--GTTAGATGTAG-----------------CCAGA--GGGACTCACTTTGGTGTTAGGCA s panTro1.chr19 82402948 298 - 82489036 CGAGGCCCTCACACACAAAGCTCT--GCCTGAGCGGCAGATAGCGAGATCTCGCAGGCCTGGCctgatccaccaggaatggctgcc---tgagcactgtgttgaaaaggattctgaggtggcattggagcccagggcaaatgctaggatcgattagccatgtctgctctgggcgtgggaggtggCGAAGGTGGCTGGTGGG--GCATGTATGTCTTCCCTGCTCAACATCCCTGCTCACCTCACAGGAGTCTCTTCTCCAGAAAGG--GTTAGATGTAG-----------------CCAGA--GGGACTCACTTTGGTGTTAGGCA s mm5.chr11 46258737 238 - 121648857 CTAGAACCCCACA-------------------------------------------------CCTGTACCACTGATCATGACTGAC---TGAGTATTGGGTTTAGAAGGATGCCAAGGTTGTATTTGAATTCAGGGTGAGTGCTGGGATCAATTAGCCATGTCTACTCTGCGCATGAACCTTGGAGAAA--GGCCTGTGGGTAACAGGCATCCCTTC-----------------CTCACCTCTCAGGACTCCCATCTCCAGGAAGGTTTTTGGACATGA-----------------CCACATGGGGACTCAGGTCAGTCCCAAGCA s rn3.chr10 47598080 222 - 110733352 CTGGACTCCCACA-------------------GCTGCA------------------------------CTGTTGGCCGTGAATGCC---TCA-------GTTTAGAAGGATGCCAAGGCTGAGTTTGAATTTGGGGTGAATGCTTGGAT-------CCATGTCTGCTCTGGGCATGAAGCTTGGAGAAA--GTCCTATGGGTCACAGACCTCCCTCC-----------------CTCACCTCGCAGGACTCTCATCTCCAGGAAGG--TTTGGACATGG-----------------CCACATGTGGACTCAGGTCAATCCCAAACA s canFam1.chr9 38068420 279 + 53642819 TGAGGCCATCCTGCACAGAGCCCTAGGCcagagtggcagataggtaaatctcgcaggcttagtct---ccgttaattgtggctgcccagtcagcactg-------aaaggtgctgaggcttcatatgagctcagagtaagtgcagtgatcaattagtcatctctgctctgggagtgggagttggggaagGTGGCT-----------------CTTAC-----------------TTCACCTCATAGGAG-CCCATCTCCAGAGAGG--TGTAGGCAGGGCCCCTGCCTATGAGGATCCACATGGGGCATCACTTTAGGGACAACCA a score=21748.0 s hg17.chr17_random 194384 70 + 2618010 GGGCACGGTTGTGGGCAAAAGGAGGTGGCTGGGGCTGCTTGGGAGAGGAGCCTGGT--AGAGTCCTAAGGGG s panTro1.chr19 82403375 70 - 82489036 GGGCACGGTTGTGAGCAAAAGGAGGTGGCTGGGGCTGCTTAGGAGAGGAGCCTGGT--AGAGTCCTAAGGGG s mm5.chr11 46258975 61 - 121648857 GAGCACAGTTGCAAGCAAA-------GGCTCAGGCTG--TCAAAGAGGGGTCTAGC--AGAACCCCGAGGAG s rn3.chr10 47598302 52 - 110733352 GAGCGCAGCTGCAGGCAAA-------TGCTGAGGCTG--TGGAAGAGG-----------GAACCCTGAGGAG s canFam1.chr9 38068699 71 + 53642819 GCAGACCATCGTGGACAAAGGGATGTGGCTGGGACTTC-AGTGAGAGGAGCCTAGCAGAGAGGCCTAAGGAG a score=0.0 s hg17.chr17_random 194454 15 + 2618010 ATCCAGGGGGACACA a score=2204.0 s hg17.chr17_random 194454 15 + 2618010 ATCCAGGGGGACACA s panTro1.chr19 82403445 15 - 82489036 ATCCAGGGGGACACA s rn3.chr10 47598356 15 - 110733352 ACCCTCAGGGACGTG a score=1738.0 s hg17.chr17_random 194469 26 + 2618010 GGGCTCAAGCTGGGCGTGTGTGGGTG s panTro1.chr19 82403784 26 - 82489036 gggctcaagctgggtatgtctgggtg s rn3.chr10 47598371 26 - 110733352 AGCTTCCAACTGAGCATGTCTGCATG s canFam1.chr9 38068770 10 + 53642819 -----------GAGC---CCTGGG-- a score=46546.0 s hg17.chr17_random 194495 316 + 2618010 GGCTCAAGCTGGGTTTGTCTGGGGGGGCTGAGGGCCTAGGAGAGAGGGTTTGGGGTGTGCAGCAGCCAGAAGGAAGAAGCCGGGTAGTCTCGGGAGGGCAAGGAATGGAGAAGCATCAGGCTGGCTGGGGATGGGGAG----------------GCCTGGAGCTGAGATCTGCCTTGAGAGGCAGGCACT-GGCAGCTGCTGAGGCAGGGAAGGCACTGGATGGGCTCCCTACTTGGCTCCCAGCTTCTC-CAGGGTGAGGAATGTACCAGAACTCTGTCTTCGGGGTTCTCC-TGAGGGAGCCACATCCAGCACCCTGAGAGGCTCCAGGTAGC s panTro1.chr19 82403810 316 - 82489036 ggctcaagctgggtatgtctgggtgggctgagGGCCTAGGAGAGAGGGTTTGGGGTGTGCAGCAGCCAGAAGGAAGAAGCCGGGTAGTCTCGGGAGGGCAAGGAATGGAGAAGCATCAGGCTGGCTGGGGATGGGGAG----------------GCCTGGAGCTGAGATCTGCCTTGAGAGGCAGGCACT-GGCAGCTGCTGAGGCAGGGAAGGCACTGGATGGGCTCCCTACTTGGCTCCCAGCTTCTC-CAGGGTGAGGAATATACCAGAACTCTGTCTTCGGGGTTCTCC-TGAGGGAGCCACATCCAGCACCCTGAGAGGCTCCAGGTAGC s canFam1.chr9 38068780 324 + 53642819 GGCTCTAACT-GGTATGTCCGGGTAGACAGAGGG--TAGGGAGGA--GTTCCAGAAGAGCAGGAGCCAGACGGTGGAA----AGTGGTCTCAGAAGGATAGGGAATGGAAACTC-TCAGGCTAATTGGGACAGGGAGGTAGACTGGGACACCACGCCTATAGCTGAGGTCTGACCCCTGAGGAGAGCCCTGGGTAGCCGCTGGAGCATGAGAGAGACCCAGACAGC-CCCTCCGTGCCTCCCTGCTCCCCTTGGGGTTGGGAATATGTCAAAGCTCTGACTTCTGGGTTCTCCACAAGGGGGCTATCCCCTACATCCCCTGGGCCAGCAGACAGC a score=133666.0 s hg17.chr17_random 194811 1506 + 2618010 ACCTTCAGGGAACTGGGGCCACGGTGACCCTTTTCCATCCACCAGGCTCCATTGTCATGGGCAGACCTTTCTGCCTTTCTTTGAACCTCCAGGCTGGAGTTGCTTGTATGAGGTTGAACGCACAGGGGACCATCTGTCCCTCCATTCCTGCCTTCACTAGTACAAGCCTCCAGTGGGCCCTTAGTGCCAGGGCCTTGCCCAGCCCTGAGGTATTAAAGATGACGCAGGTATTATctggatgcggtggctcatacctgtaatcccagcacttcaggaggctgaggtgggtggatcacttgaggtcaggaattcgagaccagcctggcagacatggcaaaaccctgtctctaccaaaaaatagaaaaattagactgtagtcccagctactcagaaggctgaggcaggagaatcgcttaaacccgggaggcagaggttgtagtgagccaagatcatgncCNNNNTGNCANTNCNCNANGCNCNNNGGGNNGNNNNNNNNNAGN---------------TNAGACTCTGTCAAAATCAAAATTTACAGGTAGAGTTCCAACTTCAAGGAACTTAGAGGCTGGGGCAGAGCCCTGAGGAAGCAGGGGGCCACACCAGGCCATGACAGGATAAACCCGAGGCAGTGGGCGCGCAGAGGGGACGGCCAACCCACCCTGAGGGTCAGAAAAGCCCCCCAGGCCCAGAAGGACCAGGAATTTATCAACGGTGAACACTGAGGAGGTCAGAGGAGGGTGCTGGAGCTGTGGATTAAGGGTGCGCAAAGGTGTGGAGGTGGGACCCGGCTTCAAAGCCAAGGGAAAGTCCGGGCGGGCTGTGAGGAGGACCTGGTGGAAGACCGTCCGCGGAAGCCGAGCGCGCCAGGCCGGGGGCTGCAGACccgtgaagggccgcttagcgctaatgttaggctctgtgtgcctcgcaatctgtggccaccatgcagctctgtccttagggcaaaagcagccatagagaagcatcacggagctggcaaggctgcgttccaacaacacggtgttaatggaagctgaagtgtgaatttcatgtcattttcatgtgtcacaaaatatttttcatttcatttttctttctgctattccaaaaagtaagaaccagctgggcacggtggctcatgtctgtaatcccagcactttgggaggccaaggtgggaagatcccttgagcccaggagtttgagatcagcctgggcaaaatagtgagacccctgtctctatttttttgaaaaagaaattgtttaagataagggtaagagccatgcttagctcacatcccacacagagccaggcgtcgggcctgatctggcccccgggctgcagttgccaacccctgGGCTGGCCCTTGCTGGGCTGTGAAGGCCACCGTAGGCCACATGCAGCCAAGAACAGGGAGGGTGTGGGTCAGATCCAGCCCTGGAAGAGCCCTTGGGAGGGAAGAGATGACAGAAGGGCTGTGAGTTCACAGTGAGGCCACTCACCAGGGACCGTGA s panTro1.chr19 82404126 1490 - 82489036 ACCTTCAGGGAACTGGGGCCACGGTGACCCTTTTCCATCCACCAGGCTCCATTGTCACGGGCAGACCTTTCTGCCTTTCTTTGAACCCCCAGGCTGGAGTTGCTTGTATGAGGTTGAACGCACAGGGGACCATCTGTCCCTCCATTCCTGCCTTCACTAGTACAAGCCTCCAGTGGGCCCTTAGTGCCAGGCCCTTGCCCAGCCCTGAGGTATTAAAGATGACGCAGGTATTATctggatgcggtggctcatacctgtaatcccagcactttaggaggctgaggtgggtggatcacttgaggtcaggaattcgagaccagcctggcagacatggcaaaaccctgtctctaccaaaaaatacaaaaattagactgtagtcccagctactcagaaggctgaggcaggagaatcgcttaaacctgggaggcagaggttgtagtgagccaagatc---------gtgccactgcact----------------------ccagcctgggtgatcaagagtcagactctgtcAAAATCAAAATTTACAGGTAGAGTTCCAACTTCAAGGAACTTAGAGGCTGGGGCAGACCCCTGAGGAAGCAGGCGGCCACACCGGGCCATGACAGGATAAACCCGAGGCAGTGGGCACGCAGAGGGGACGGCCAACCCACCCTGAGGGTCAGAAAAGCCCCCCAGTCCCAGAAGGACCAGGAATTTATCAACGGTGAACACTGAGGAGGTCAGAGGAGGGTGCTGGAGCTGTGGATTAAGGGTGCGCAAAGGTGTGGAGGTGGGACCCGGGTTCAAAGCCAAGGGAAAGTCAGGGCGGGCTGTGAGGAGGACCTGGTGGAAGACTGTCCGCGGAAGCCGAGCGCGCCAGGCCgggggctgcagacccgtgaagggccgcttagcactaatgttaggctctgtgtgcctcgcaatctgtggccaccatgcagctctgtccttagggcaaaagcagccatagagaagcatcacggagccggcaaggctgcgttccaacaacatggtgttaatggaagctgaagtgtgaatttcatgtcattttcatgtgtcacaaaatatttttcatttcatttttctttctgctattccaaaaagtaagaaccagctgggcacggtggctcatgtctgtaatcccagcactttgggaggccaaggtgggaagatcccttgagcccaggagtttgagatcagcctgggcaaaatagtgagacccctgtctctaTTTTTTTGAAAAAGAAATTGTTTAAAATAAGGgtaagagccatgcttagctcacatcccacacagagccaggcgtcgggcctgatctggcccccgggctgcagttgccaacccctgGGCTGGCCCTTGCTGGGCTGTGAAGGCCACCGTAGGCCACATGCAGCCAACAACAGGGAGGGTGTGGGTCAGATCCAGCCCCGGAAGAGCCCTTGGGAGGGAAGAGATGACAGAAGGGCTGTGAGTTCACAGTGAGGCCACTCACCAGGGACCGTGA a score=3700.0 s hg17.chr17_random 196317 23 + 2618010 CCAGGCCCGGCTG----CAGCAGCCGG s panTro1.chr19 82405616 23 - 82489036 CCAGGCCCGGCTG----CAGCAGCCGG s rn3.chr10 47598903 27 - 110733352 CCAAGCCTGTCTGCTCACATCCGCCAG a score=0.0 s hg17.chr17_random 196340 5 + 2618010 ATGGG a score=282.0 s hg17.chr17_random 196340 3 + 2618010 ATG s panTro1.chr19 82405639 3 - 82489036 ATG a score=600.0 s hg17.chr17_random 196343 2 + 2618010 GG s panTro1.chr19 82405642 2 - 82489036 GG s mm5.chr11 46259045 2 - 121648857 GG a score=8236.0 s hg17.chr17_random 196345 25 + 2618010 CGGGCTCAGGAAGAGGAGGCCAAGG s panTro1.chr19 82405644 25 - 82489036 CGGGCTCAGGAAGAGGAGGCCAAGG s mm5.chr11 46259047 25 - 121648857 TGGACGTGAGGGGAGGAGACTAGGG s rn3.chr10 47598930 25 - 110733352 TGGACACTAGGGGAGGAGACTAGGG a score=-1086.0 s hg17.chr17_random 196370 10 + 2618010 ACGGCC--------------AAGA s panTro1.chr19 82405669 10 - 82489036 ACGGCC--------------AAGA s mm5.chr11 46259072 24 - 121648857 GCAGCCTCACTGTCTGCTTAGCTA s rn3.chr10 47598955 24 - 110733352 ACAGCCTCTCTGTCTGCTTAGCCC s canFam1.chr9 38069115 10 + 53642819 ATAGCT--------------GAGG a score=16640.0 s hg17.chr17_random 196380 44 + 2618010 GAGGG-GTGGGAGCAGGTGAGGA---CTGAGTGACCGTCCCGTCCAAC s panTro1.chr19 82405679 44 - 82489036 GAGGG-GTGGGAGCAGGTGAGGA---CTGAGTGACCGTCCCGTCCAAC s mm5.chr11 46259096 47 - 121648857 GGAAG-GTGGAAGCAGACAAGAACAGCAGAGTGACCACCCTCTCCTGC s rn3.chr10 47598979 47 - 110733352 AGAAG-GTGGAAGGAGACAAGAACAGCAGAGTGACCACCCTCTCCTGC s canFam1.chr9 38069125 47 + 53642819 GAGGGAGTGGGAACAGGTGAGGCTAGCCAAGTGGCT-CCCTGCCCAAC s galGal2.chr19 6614652 41 + 9463882 GGAGA-GGGTGAGCAGCCCCAGA---CTGGGCACATTCCCTCCC---C a score=47239.0 s hg17.chr17_random 196424 29 + 2618010 AGGTGGACAAGACTGAAGACAAGTCCCTG s panTro1.chr19 82405723 29 - 82489036 AGGTGGACAAGACCGAAGACAAGTCCCTG s mm5.chr11 46259143 29 - 121648857 AGGTGGACAAGGCAGAGGACAAGTCTCTG s rn3.chr10 47599026 29 - 110733352 AGGTGGACAAGGCAGAGGACAAGTCCCTG s canFam1.chr9 38069172 29 + 53642819 AGGTGGACAAGACAGAAGACAAGTCCCTG s galGal2.chr19 6614693 29 + 9463882 AGATAGACAAAACAGAGGACAAGTCGCTG s fr1.chrUn 341593168 29 - 349519338 AGGTGAACAAGGCAGAAGACAAATCCCTG a score=255991.0 s hg17.chr17_random 196453 136 + 2618010 GAGGAGCGGGGCCGCATCCTCATCTCCCTCAAGTACAGCTCACAGAAGCAAGGCCTGCTGGTAGGCATCGTGCGGTGCGCCCACCTGGCCGCCATGGACGCCAACGGCTACTCGGACCCCTACGTGAAAACGTGAG s panTro1.chr19 82405752 136 - 82489036 GAGGAGCGGGGCCGCATCCTCATCTCCCTCAAGTACAGCTCGCAGAAGCAGGGCCTGCTGGTAGGCATCGTGCGGTGCGCCCACCTGGCCGCCATGGACGCCAATGGCTACTCGGACCCCTACGTGAAAACGTGAG s mm5.chr11 46259172 136 - 121648857 GAAGAGCGAGGCCGCATCCTCATCTCCCTCAAGTACAGCTCACAGAAGCAGGGCCTGCTGGTGGGCATCGTGCGCTGTGCACACCTGGCTGCCATGGATGCTAATGGCTACTCGGACCCCTATGTGAAAACGTGAG s rn3.chr10 47599055 136 - 110733352 GAGGAGCGTGGCCGCATCCTCATCTCTCTCAAGTACAGCTCACAGAAGCAGGGCCTGCTGGTGGGCATCGTTCGCTGCGCACACCTGGCGGCCATGGATGCTAATGGCTACTCAGACCCCTACGTGAAAACGTGAG s canFam1.chr9 38069201 136 + 53642819 GAGGAGCGGGGACGAATCCTGATCTCCCTCAAGTACAGCTCACAGAAGCAGGGCCTGCTGGTCGGCATTGTGCGCTGTGCACACCTGGCTGCCATGGATGCCAACGGCTACTCGGACCCCTACGTGAAGACGTGAG s galGal2.chr19 6614722 136 + 9463882 GAGGAGCGCGGCCGGATCCTCATCTCCCTCAAGTACAGCTCACAGAAGCAGGGCCTGCTGGTGGGCATCATCCGCTGTGCCCACCTAGCTGCCATGGATGCCAATGGATACTCCGACCCCTACGTCAAGACGTGAG s fr1.chrUn 341593197 136 - 349519338 GAGGAGCGCGGCCGCATCATGATTTCCCTCAAGTACAACACCCAGAAGTCCTGCCTGGTCGTCGGCATCATCCGCTGTGCTCACCTCGCCGCCATGGACGCCAACGGCTTCTCCGACCCTTATGTGAAAACGTCAG s danRer1.chrUn 153140702 136 + 367113659 GAGGAAAGAGGACGGATCCTGGTTTCCCTCACCTACAACAGTCAACAAGGTCGTCTGATCGTGGGTGTCGTCCGATGTGCTCATCTGGCAGCAATGGACTCCAATGGCTATTCAGACCCGTTTGTAAAGATGTAAG a score=2750.0 s hg17.chr17_random 196589 5 + 2618010 TGTGC s panTro1.chr19 82405888 5 - 82489036 TGTGC s mm5.chr11 46259308 5 - 121648857 TGTGC s rn3.chr10 47599191 5 - 110733352 TGTGC s canFam1.chr9 38069337 5 + 53642819 TGCAT s galGal2.chr19 6614858 5 + 9463882 TGATG s fr1.chrUn 341593333 5 - 349519338 TACAC a score=-7025.0 s hg17.chr17_random 196594 22 + 2618010 CGTGCGCGTGAC-CACCTGCCA-C s panTro1.chr19 82405893 22 - 82489036 CGTGCGTGTGAC-CACCTGCCA-C s mm5.chr11 46259320 20 - 121648857 CCTGCGCTTGACTCCCCTGC---- s rn3.chr10 47599203 20 - 110733352 CCTGTGCTTGACTCCCCTGC---- s canFam1.chr9 38069350 16 + 53642819 CCAGC--------CATCTCCTAGC s galGal2.chr19 6614868 20 + 9463882 AGTGCACCCCACCCTGCCCC---- s fr1.chrUn 320723378 19 - 349519338 -CAATATGAGCCCCTCCCGC---- a score=1073.0 s hg17.chr17_random 196616 32 + 2618010 -----GTCTTCACCTCCAAGGACGGGGGTCC----GTGT-GC s panTro1.chr19 82405915 32 - 82489036 -----GTCTTCACCTCCAAGGACGGGGGTCC----GTGT-GC s mm5.chr11 46259340 30 - 121648857 ---------TCACCTGGGAGAACCAGAGTCC---TATATGGC s rn3.chr10 47599223 30 - 110733352 ---------TCACCTGAGAGAACCAGAGTCC---AATATGGC s canFam1.chr9 38069366 33 + 53642819 -----CCCCTCACCTCAAAGGACAGGAGGTC---TGTGG-AT s fr1.chrUn 320723397 37 - 349519338 GCTAAAATTCTGCCTCCAGG--CAGGATTCTGCTCGTGC--- a score=14147.0 s hg17.chr17_random 196648 56 + 2618010 CGGCTCCGTGGTCCCAGGTGGCAGGCACCCAGGGAG-TGCCTGAGGTACAGGGGCGC- s panTro1.chr19 82405947 56 - 82489036 CGGCTCCGTGGTCCCAGGTGGCAGGCACCCAGGGAG-TACCTGAGGTACAGGGGCGC- s mm5.chr11 46259370 57 - 121648857 TGGAGCCAGAGCCCAGCATGAGAGGCACTAAGGGGGTTTCCTCAGAGCAACCAGCTT- s rn3.chr10 47599253 57 - 110733352 TGGAGCTAGAGCCCAGCATGGCAGACACTAAGGGGGTTTCCTCAGAGTAATGGGCTT- s canFam1.chr9 38069399 57 + 53642819 GAGATCAGGAGTCTAATGTGGCAAGCACTAAAAGAG-CTCCTGAAGCACAGCGGGTAC a score=21662.0 s hg17.chr17_random 196704 86 + 2618010 T----------GTGTTCCCTGATGGGCTACCTTGGcaactccaggggttaagcatggccag-cccatttcacagatggggaaactgagggacagaga s mm5.chr11 46259427 95 - 121648857 TGTCCACCAGGGTGTTTTCTTCTGGGTTCCTTTTGTGATTCT-GGGGTTAAGCAAAGCCGT-CTCATTTCATAGATGGGGGAACTGAAGTCTGCAGA s rn3.chr10 47599310 91 - 110733352 TGTCCAGCAGGGT----TCTTCTGGGTTCCCTTTGTGATTCT-GGGGTTAAGTACAGCCAT-CTCATTTCATAAAGGGGGGAACTGAAACCTGCAGA s canFam1.chr9 38069470 87 + 53642819 ----------tgtatcctcttctgtactcctttggcaatgctgggggttaagtctgaccagccccatttcacagatggggaaactgaggcctgtaga a score=0.0 s hg17.chr17_random 196790 10 + 2618010 agctgagtgg a score=573.0 s hg17.chr17_random 196790 2 + 2618010 ag s mm5.chr11 46259522 2 - 121648857 AG s rn3.chr10 47599401 2 - 110733352 AG a score=20.0 s hg17.chr17_random 196792 8 + 2618010 ctgagtgg s mm5.chr11 46259524 2 - 121648857 ------GG a score=858.0 s hg17.chr17_random 196800 38 + 2618010 -cttcccagggtcatgc--------------------aggtattaGTTATCACCTGATG s mm5.chr11 46259526 36 - 121648857 -TCGCCCAGTGGGAG----------------------AGGGAATAGTTATCTCTTTTTG s canFam1.chr9 38069557 58 + 53642819 ctttcccag-gtcatgcagagagagagagagagagagagagaATAGTTCTCTCCTGACA a score=607.0 s hg17.chr17_random 196838 44 + 2618010 CTATGTCCAGGCCTCTCTGTGACTGAGGGGCCCAGGAGGGGCCA s canFam1.chr9 38069615 41 + 53642819 CCCCATTCAGACCTCCCATTGACTG-TGACCTCAGAAAGGAC-- a score=396.0 s hg17.chr17_random 196882 4 + 2618010 TGAG s mm5.chr11 46259764 4 - 121648857 CAAG s canFam1.chr9 38069656 4 + 53642819 TGGG a score=42167.0 s hg17.chr17_random 196886 424 + 2618010 TTGCAGGAGGGGACAGAAGGCGGGGCCAGTGCCGGGGGTAGCCAGGAGGCTGGGGGAGGATGCAGAGGAACTCTGCCAGGCCTTTGCAACTGCCCACATTTGCCCAGCCCTATAATGGTGCTACAGATGCGGATAAGAGTCCACCCAGCTCTACCAACAGGGCTGATGGTGGGCCTGGGGAGAGACACTAACTCAGGGGGCCATGCCAGGTGGCCTGGGCCGCAG-AGCTGTGGAGCTGTGAGCCTGGTCAGGAGAGGCTG----TGTAGCTCTGAGAGCCAGGCAGGAGCTGGCGACCCTTTGGAGAGGGTGCTA-CAGGTGCCACAGTGACTACCGTCAGTGCTCGGGGCTCTTCAGAAACTAGGTAGGTATGAGTG------TGAGCTCACAGGGA--GACTCTGGAAAACTG-AGACTTGGGGAGGAATTTAGTT s mm5.chr11 46259768 365 - 121648857 TTCTAGGAAG-------AGGCAGGCCCAGTGCCGGG---AGCCTGGAGGCTTGGGGAACTGGCAGGAGACCTTTGCCAAGTCTTCCTGTGTGCCCA---------GGCCCCGTG--------------------------TCTCCTCTCCCTACCA------CTGATAGAAAAGCTACAAATAGACACTGGCT--AGGGGTGGTACCA-GTGGCCTGGGCCCCAC-AAGAGTAGATCTG-------GACCGGGTTAGGCTGCTCTTAGAGATCCAGGGGCTAGGTAGAAGGAGGTGGCCTTTTAGAGAAGAAGGGAGCAAGTGCCACATAGCCTACCCTTAGTGCTTGGCACAATTCACAA-------TAGTGTAAATGCCA-TCTGAGTTCACAGGGATCATCTCCTGAGAA--G-AGCCTT-GGGAAGAATTCAGCT s rn3.chr10 47599630 363 - 110733352 TCGGAGGAGG-------AGGTG----CGGTGCCCTG---AGCCAGGAGGCTAGGGGAGCTGGCAAGAGACCTTTGCCAAGTCTTCCTGTATGCTCA---------GCCCCTGTG--------------------------TCTCCCCTCCCTACCA------CTGACAGTAAAGCTACAAAGAGACAAAGGCTT-AGGGGTTGTACCA-GTGGCCTGCGCCCCACAAAAAGTAGACCTG-------GACTGTGTTAGGCTGTTCTCAGAGATCCAGAAGGCAGGTAGAAGGGGTTGGCCTTTTGGAGAAGAAGGGGGCAAGTGCCATAGAGCCCACCCTTAGTGCTTGGGATGCTTCCCAA-------TAGCGTAAACGTCA-TCTGCGTTTACAGGGATACTCTCCTGAGAA--G-AGCCTT-GGGAAGAATTCAGCT s canFam1.chr9 38069660 382 + 53642819 TTGGAGGTAG--------GACTGGGCCTGGGCCAGA-----CCAGGAGATCCAGTGAAGACTCAGTG--------------CTGCCTGTGTGCACC--------CAGGCCTATGCTGGTAGCACAGAAGCTGAGAAAG--TCCACCCACCCTGCCAGTGGGACTCATGGTGGTGCTGGAGAGAAACCCTAAGTCAGGGGGCCATGCAAAGTACCATGGGCTCCAG-AGTCATGAACCTG-------TGCCAGCATGGGC------TATGACTCTGAGAGGGAGGCAGGGGCTGGTGGCCCTCCAGTTAGGAAGGAGGCAGGTGGCGCACTGAGCACCCTCAGGGCCCTGGGCCTTCTGCAAATA----AAAGATGGATATTAGTCTGGATTCCCATTGAGGCTTTCTCAAAGG--GTAGATGTGGGGAAGAATTGGGGT a score=466.0 s hg17.chr17_random 197310 121 + 2618010 CAGCAGAAAGGAGG------------GGCAGGTGCTTCAGGGAGGGGGAAT---GACAGAGGGATGGCCCTGACCT-AGGGGACACCAAGGACCCAGGTGACTAAGGCCTCAGGGACATCTTGGCACCATGAAGAGG s canFam1.chr9 38070042 95 + 53642819 CAGCAGAAAGGAGGTATTCCTATTTAAGTAGAGGAATAAAGGAGTGAAGACGTAGAAGCAGGGATGAGCCTGGCCTGAGGGGACAGTGAGGAGCC------------------------------------------ a score=-31.0 s hg17.chr17_random 197310 1 + 2618010 C s mm5.chr11 46260133 1 - 121648857 T a score=200.0 s hg17.chr17_random 197429 2 + 2618010 GG s panTro1.chr19 82407482 2 - 82489036 GG a score=15063.0 s hg17.chr17_random 197431 79 + 2618010 CCAGTACTCCTCGTGGCACAGCTCTAGGGGCACCATTCCCA-TGGCCATGATCATATTTCTGTCACTTTAAAAATTGTAT s panTro1.chr19 82407484 79 - 82489036 CCAGTACTCCTCGTGGCACAGCTCTAGGGGCACCATTCCCA-TGGCCATGATCATATTTCTGTCACTTTAAAAATTGTAT s canFam1.chr9 38070137 79 + 53642819 CCAGTGCTCC-CATGACCCAACTCTGGAGCTACCATGCCCACTGGCCACTATTATATTTCTGTCAGTTTTAAAATCCTAT a score=49914.0 s hg17.chr17_random 197510 577 + 2618010 GTGGCAGGTGCAGTGAGTTACACTTACATTCTGANNANCNactttgggaggccaaggcaggaggattgcttgaggctaggagtttgagaccatcctgggcaacatagtgagacctccatctctacaaaaaaattaaaaattagcctggtgtagtggcatgtccctgtagtcctaactacttgagaggattgcttgaacccaggaatttgagacCAGCCTTGGCAACATACTGAGACCTTGTCTCTACAGTTAAAAATAGTAATAAATTAggctgagtgcagtggctcgtgcttgtaatcccagtactttgggaggccgaggcgcacggatcacctgaggtcaggagtttgagaccagcttggccaatatggggaaacccgtcntcntacntaaaaataaaaaaattagctgggtgtggtggcgggcgcctgtaatcgcagctacttgggaggctgaggcaggaaaatcacttcaacctgggaggtggagattgcagtgagccgagatcacaccactgcactccagccagggtgacagagcgagacact--ctcaaaata-taataaacaaataaaaataa s panTro1.chr19 82407563 573 - 82489036 GTGGcaggtgcagtgagttacacttacattc---ccaac-actttgggaggccaaggcaggaggattgcttgaggctaggagtttgagaccatcctgggcaacatagtgagacctccatctctagaaaaaaattaaaaattagcctggtgtagtggcatgtccctgtagtcctaactacttgagaggattgcttgaacccaggaatttgagaccagccttggcaacatactgagaccttgtctctacagttaaaaatagtaataaattaggccgagtgcagtggctcgtgcttgtaatcccagtactttgggaggccgaggcgcacggatcacctgaggtcaggagtttgagaccagcttggccaatatggggaaacccatct--ctac-taaaaataaaaaaattagctgggtgtggtggcgggcgcctgtaatcgcagctacttgggaggctgaggcaggaaaatcacttcaacctgggaggcggagattgcagtgagccgagatcacaccactgcactccagccagggtgacagagcgagacactgtctcaaaataataataaacgaataaaaaTAA a score=49069.0 s hg17.chr17_random 198087 276 + 2618010 TAtgagaataatgggatggccactttgggaagcagctgatagttcctcaggaagttaaacacagaatcaccatttgatctggcaattccactccttgttatatacccaagag-ataagaaaaacatgtccatcctaaaacttgtgcaggaatgttcatagcagcactatccacaacagccaaaagtggaaacaccccaagtgtccatccactgatgaatggatacacaaa-tgaagtctgtccctgcagtggaata----tcagccctaagaaggagtgtag s panTro1.chr19 82408136 276 - 82489036 TATGACAATaatgggatggccactttgggaagcagctgatagttcctcagaaagttaaacacagaatcaccatttgatctggcaattccactcctagttatatacccaagag-ataagaaaaacatgtccatcctaaaacttgtgcaggaatgttcatagcagcactatccacaacagccaaaagtggaaacaccccaagcgtccatccactgatgaatggatacacaaa-tgaagtctgtccctgcagtggaata----tcagccctaagaaggagtgtag s canFam1.chr9 38070367 279 + 53642819 TATTGCAaaaatggtgcagccactttggaaaatagcc--tggtgtgttcaaaagttaaacatggaat-accacgcaacccggcagttctactcccaggtgcacacccaagagaactggaaacacatgtccacacaaacacttatacacgaatgttcacagcagcaatattcacaataggcaaaaaggaaaccacctaaaatgtccatcagctaatgaatggataaacaaactgtggcatatccatacaatggaatattattcagctatagaaaggagtgaag a score=44067.0 s hg17.chr17_random 198363 523 + 2618010 caGGTGCGTGGAATATCAGTCATAAGAAGGAGTGTAGCAGGTGCGTGGAATATCAGCCCTAAGAAGGAGTGTAGCAGGTGCGTGGAATATCAGCCCTAAGAAGGAGTGTAGCAGGTGCGTGGA-------------------------------------ATATCAGCCCTAAGAAGGAGTGTAGCAGGTGCGTGGAATATCAGCCCTAAGAAGGAGTGTAGCGGGTGCGTGGAATATCAGCCCTAAGAAGGAGTGTAGCGGGTGTGTGGAATATCAGCCCTAAGAAGGAGTGTAGCAGGTGCGTGGAATATCAGCCATAAGAAGGAGTGTAGCAGGTGCGtggaatatcagccctaagaaggagtgtagcaggtgcatgctacactgtgggaggaccttggaaacaagatgctaagcgagagaagccagacacagacggccacgtgttgcaggactctatttctatgacgtgtccagaataggtcaacccacagaggcagagagtagatttgtggttgcaggagccaggggaagcttgaggnggnnnnnacatgggcag s panTro1.chr19 82408412 554 - 82489036 caGGTGCGTGGAATATCAGTCATAAGAAGGAGTGTAGCAGGTGTGTGGAATATCAGCCATAAGAAGGAGTGTAGCATGTGCATGGAATATCAGCCCTAAGAAGGAGTGTAGTAGGTGCGTGGACTATCAGCCCTAAGAAGGAGCGTAGCACGTGCGTGGAATATCAGCCCTAAGAAGGAGCGTAGCACGTGCGTGGAATATCAGCCCTAAGAAGGAGGGTAGCAGGTGCGTGGAATATCAGCCCTAAGAAGGAGGGTAGCAGGTGTGTGGAATATCAGCCCTAAGAAGGAGTGTAGCAGGTCCGTGGAATATCAGCCCTAAGAAGGAGTGTAGCAGGTCCGtggaatatcagccctaagaaggagtgtagcaggtgcatgctacactgtgggaggaccttgaaaacaagatgctaagcgagagaagccagacacagatggccacatgttgcaggactctatttctatgaagtgtccagaataggtcaacccacagaggcagagagtagatttgtggttgcaggagccaggggaagcttgagggg------acatgggcag a score=20845.0 s hg17.chr17_random 198886 137 + 2618010 tgtgtagaatgtggtactatgaagttaaaaatgaataaatttgaactagagGAATTATTATAACACGGACAGCTGTCGAAAA--------CACAACA-----------AACGACACACACAGTAGGATACTGGTTTGCGTATATATATGTTTTTTC s panTro1.chr19 82408966 137 - 82489036 tgtgtagaatgtggtactatgaagttaaaaatgaataaatttgaactagagGAATTATTATAACATGGACAGCTGTCGAAAA--------CACAACA-----------AACGACACACACAGTAGGATACTGGTTTGCGTATATATATGTTTTTTC s canFam1.chr9 38072275 149 + 53642819 tgcgtataatgaagtactaggcagtt-aaagtgaataaattaggacttggtaaat-----taacatggacagctatccaaacatgctgatcccaaaagcaaacttcagaacagtgcacacagtgtgatact-gtttctgtaCATTTGTGTATCTCC a score=3404.0 s hg17.chr17_random 199023 39 + 2618010 TTCTGATTTGTCATTGACTTGAATTTCACGCGTATATAT s panTro1.chr19 82409103 39 - 82489036 TTCTGATTTGTCATTGACTTGAATCTCACGTGTATATAT a score=8100.0 s hg17.chr17_random 199062 41 + 2618010 CCTTGCAGGAGGATATGCAATCTGAAGCCAAAATGGTGTGA s panTro1.chr19 82409142 41 - 82489036 CCTTGCAGGAGGATATGCAATCTGAAGCCAAAATGGTGTGA s canFam1.chr9 38072529 41 + 53642819 CCATACAGAAGGAAAGATAATCCAAAGTCAAAATGGTATAA a score=27189.0 s hg17.chr17_random 199103 305 + 2618010 tttttttttttttt---gagacagagtcttactctgttgcccaggctggagtgcagtggcgtgatctcagctcactgcaacgtctgcctcccaggttcaagcagttctcatccctcagcttcccaagtagctgggattacaggcatgcgccaccacgccaggctaatttttgtatttttagtagacggggtttcaccatgttggccaggctggtcttga-actcctgacctcaagtgatccacccaccctggcctcccaaagggctgggattacaggcgtgagccactgtgcccggccTATGGTGTGAC s panTro1.chr19 82409183 309 - 82489036 tttttttttttttttttgagacagagtcttactctgtcgcccaggctggagtgcagtggcgtgatctcagctcactgcaacctctgcctcccaggttcaagcagttctcctgcctcagcttcccaagtagctgggattacaggcatgcgccaccacgccaggctaatttttgtatttttagtagacggggtttcaccatgttggccaggctggtcttgacactcctgacctcaagtgatccacccaccctggcctcccaaagggctgggatgacaggtgtgagccactgtgcccggccTATGGTGTGAC a score=14182.0 s hg17.chr17_random 199408 80 + 2618010 ATTTT----TAAACCAGTTTCAATGCCCACCTGCCAGATGGACAGGAATTCCAGGGTCACCTGCTGGGTTGCCCAGAAAGCAGA s panTro1.chr19 82409492 80 - 82489036 ATTTT----AAAACCAGTTTCAATGCCCACCTGACAGATGGACAGGAATTCCAGGGTCACCTGCTGGGTTGCCCAGAAAGCAGA s canFam1.chr9 38072776 80 + 53642819 atttttttaaaaatCTGGCTCAGTGTCCAACTGCCAGGTTGACAGGAATTCCAGGGTCCTATGCTGGATT----AAAAATCAGA a score=15174.0 s hg17.chr17_random 199488 158 + 2618010 GTCTTACCTGCTGTGACAGATGGTCTGGTCAACTTCCACAGGCAGGCGGGGGGCCATCTGGGCAGGGCCTGTCCACTGTACCACAAGCTCCTCCCTGCCACAGGTGGCTGCTGTGGGTGCTGCTGGACCCCTGCAGCTGGGTCCCACCTGCCAGCCGT s panTro1.chr19 82409572 158 - 82489036 GTCTTACCTGCTGTGACAGATGGTCTGGTCAACTTCCACAGGCAGGCGGGGGGCCATCTGGGCAGGGCCTGTCCACTGTACCACAAGCTCCTCCCTGCCACAGGTGGCTGTTGTGGGTGCTGCTGGACCCCTGCAGCTGGGTCCCACCTGCCAGCCGT a score=9558.0 s hg17.chr17_random 199646 53 + 2618010 GGGCCAGGTCACGTGGCCTTTCAAAGACAGGCCGAGCTGTGGGCCACTCCCTG s panTro1.chr19 82409730 53 - 82489036 GGGCCAGGTCATGTGGCCTTTCAAAGACAGGCCGAGCTGTGGGCCACTCCCTA s mm5.chr7 4508292 53 - 133051633 GAGCTGTACCAGGTGGCTTTTCAGAGCCAGGCCGTGCTGGGGTGCTCTCTCTG a score=18527.0 s hg17.chr17_random 199699 205 + 2618010 TATCTGAGCCACGCCTCACCCGAGACCTCCACATCTGTTTCAGACACCCTGGGTGAGACACGACGGCTGCTGCTCGGGGCTCCTCAGGGGTCCCCGNTCTCTGAAAGGCCCCTTCATGGACCAGGGGCCTCTTCCTCACTAAAGCAGAGGAAATAAGGGCACAGATTAGATGGTAAGAGGGGCACCCCTCAGCTGCATCCTAGAC s panTro1.chr19 82409783 204 - 82489036 TATCTGAGCCACGCCTCACCTGAGACCTCCACATCTGTTTCAGACACCCTGGGTGAGACACGAGGGCTGCTGCTCAGGGCTCCTCAGGGGTCCCC-ATCTCTGAAAGGCCCCTTCATGGACCAGGGGCCTCTTCCTCACTAAAGCAGAGGAAATAAGGGCACAGATTAGATGGTAAGAGGGGCACCCCTCAGCTGCATCCTAGAC a score=89672.0 s hg17.chr17_random 200820 974 + 2618010 GGCTTGTGCCAGAGTAGGGTATGCTCAGGGAGGGTGCTGAGGGATTTCCCCAGAGTGGTCAGG-TGAGGAGGGAAGGGCACTTCTGGTAGAGAAAACAGCAGAACAGAGGGCAACGCTGGCGGAACTGTCCATGGCTGAAGGTGCCGAGGCTGGAGCCTGTCGTGGAAGTCTGGTGGCTGAGTGAGGGGTCACCAGATGGGCACAAGTTGTCCAGGCTGAGGGTGCAGAGATCCCAAAACAACTTTCCTTCCAGGGGCTTGTGAAGGCAGGGCACGCAGGACCCTTCTGTCCCTGCTCCTCACCCGTCACCAAACAGGCCAAGGACAGTTCACAGCAGACACAATATACCAATACCTAGAGAAATGGCCAAGGAGCATAGTAAGTAACTAAGGAAATCCGCTGTCTCCGGGTGGCGGGCTTAGGGGAATCCCCCCAAACTTTTTTAAAATCAGGTTTATTGAGGTAcaggttgagcgtcccaaagctgtaaatccaaaaccccaaacattccaagcaccgacatgacgctcaaagggaatgcttattggcgcgtttgggatttcagatttttgaatttttgagttagggatgctgaactggtaaatatactgcaaagattacaaaatatgaaaaaatccaaaattcaaaacatctggtccaagcatttcagataatggatcctcaacctgTATCATTCATATCCAGTGAGtttttcttttcttttctttttttagagacagggttttgctctgttgtccaggccaaagtgcagtggcgcaatcatagctcattgcagccttgaactcctgggctcaagcatcttcccacctcagcactgtgaatagctgggactacaggcatgcaccaccatgcccagctaatttttaattttttggtagagatggggtctcgctgtatcacccaggctggGacagtcttgtttccaccaccagaatcaacatagagaatatgac s panTro1.chr19 82411240 972 - 82489036 GGCTTGTGCCAGAGTAGGGTGTGCTCAGGGAGGGTGCTGAGGGATCTCCCCAGAGTG-TCAGGGTGAGGAGGGAAGGGCACTTCTGGTAGAGAAAACAGCAGAACAGAGGGCAACACTGGCGGAACTGTCCATGGCTGAAGGTGCCGAGGCTGGAGCCTGTCGTGGAAGTCTGGTGGCTGAGTGAGGGGTCACCAGATGGGCACAAGTTGTCCAGGCTGAGGGTGCAGAGATCCCAAAACAACTTTCCTTCCAGGGGCTTGTGAAGGCAGGGCACGCAGGACCCTTCTGTCCCTGCTCCTCACCCGTCACCAAACAGGCCAAGGACAGTTCACAGCAGACACA--ATACCAATACGTAGAGAAATGGCCAAGGAGCATAGTAAGTAACTAAGGAAATCTGCTGTCTCCGGGTGGCGGGCTTAGGGGAATCCCCCCAAACTTTTTTTAAATCAGGTTTATTGAGGTAcaggttgagcgtcccaaagctgtaaatccaaaaccccaaacattccaagcaccgacatgacgctcaaagggaatgctcattggcgcgtttgggatttcagatttttgaatttttgagttagggatgctgaactggtaaatatactgcaaagattacaaaatatgaaaaaatccaaaattcaaaacatctggtccaagcatttcagataatggatcctcaacctgTATCATTCATATCCAGTGAGtttttcttttcttttctttttttagagacagggtcttgctctgttgtccaggccaaagtgcagtggcgcaatcatagctcattgcagccttgaactcctgggctcaagcatcttcccacctcagcactgtgaatagctgggactacaggcatgcaccaccatgcccagctaatttttaattttttggtagagatggggtctcgctgtatcacccaggctggtacagtcttgtttccaccaccagaatcatcatagagaatatgac a score=33176.0 s hg17.chr17_random 201794 257 + 2618010 cccagaaagttccctggccccaggcaaccactcacctgttttctgtctcaatggtgttgccgtttccagactttcccatgaaacagtcagatagtgtgttgccctgtgagtccggcttctttc--acacggaggaatgcgtttgagattcatctgtcagttgcatgtaccaggagtttggtcctt--tttgttgctaagtggtcttccattgtgtgggtaaacca-caagtttgttgttgatgagttccccagttgaagggc s panTro1.chr19 82412212 258 - 82489036 cccagaaagttccctggccccaggcaaccactcacctgttttctgtctcaatagtgttgccgtttccagactttcccatgaaacagtcagatagtgtgttgccctgtgagtccggcttctttc--acagggaggaatgtgtttgagattcatctgtcagttgcatgtaccaggagtttggtcctt--tttgttgctaagtggtcttgcattgtgtgggtaaaccaccaagtttgttgttgatgagttccccagtcgaagggc s mm5.chr11 46261066 245 - 121648857 CCCAG-AATTCCCTTAGCTCCAGGCATCCTCTGGCCTGTTGTCTATCCCAGTAGCATCGCCTTTTCCAGA-TTTCACATCAAGCA-TCTTCTGG-ATGCTGC----TTAGTTGAGCTTCTCTCCTGCAATGAATGATTTGACTAAGGTTCACCCACACAGTATATACACTGGGGATGCCATCTTTGATTGGCTGCATAG----CTTTCGGTATGTGCAGAAAACA-----TGAATTGCTAATCAGTTTACCAGTTGAAGAGC a score=1177.0 s hg17.chr17_random 202051 60 + 2618010 gtgtggttgtttgcaatttttggtgatggtagaaagctgcaatgaacaggtttttgtgtg s mm5.chr11 46261311 59 - 121648857 ACACAGACTGTTACAATTTTGGATGATGGTGCAGATTGGCCATTAACCAGTATT-GTGTA a score=2451.0 s hg17.chr17_random 202112 86 + 2618010 acatatgtcttcatttctctCTCCTAATC-CCAACTTTTGTCCACATGCATTTTCTAGTGCTT-CTGTAATAAACCAGTATTATTTAT s mm5.chr11 46261504 88 - 121648857 ATACACATCTTCATTACATACCCTTTGTCATCACCGTTTGCTCACACAGCCTTCCTAATGTTTGTTTTAACAAACCAGGATCATTCAT a score=16991.0 s hg17.chr17_random 202265 740 + 2618010 AAACCAGCAAGGAGTTTTTAAATGATAGCATTCAGCTTTGTCGCAGGCTACTGTGTGTCAACCATGCAGCCTTTCTGGAGAGGAACTGGGCAGAATAAGCTGGACATGGGCGTGTCTTTGGGCGGTGCCTTCACTTCTAGGGATGCAGGTTAAGCTGGACATGGGCGTGTCTTTGGGCGG-TGGCTTCACTTCTAGGGATGCAGGTATTCGCTGGACAGATGTTTGTTAAGCTCCCTGGTG--CCAGGCCC-------------AGGGAGTTGGTCGTGGGTGAGAC------CCCAGAGACCCCAGAGCACATTCAGCAGGGACAAGGCAATTGTCATGCAATTATCTATGCAGGAACAGGGTGAGAAGCTTTGCAAAGAAGTTGGGGACCTCTTGTCCCCTTCTCCAGCCTGCACATGACCTCCCTGTCATAGAGAAAggagtctgagcctggctttcaagcaccacgcttgtgcttgcaggctgtgtgaccttgggcaagtcactccccctctntgagcctcagAGGAAGACAGCTGTTCTGCATCAGAGCCTAAGGCCTTAGTGGCTGTGGAGGGAAGAACATCTAGGT--GGCCTNCNCGTGTNGACTGCACAAAAGGTCTTGTC----CTTCCTCAAAGCTCCAATGGaggtagtggtgatggatgtacaactctgggagtctactaa---------------aggc------------------tactgc--gttttacacttcagaaggat---------------ggattttatggtatgtgaattatatctcaataaatctgctattt s canFam1.chr9 38083456 697 + 53642819 AAATCAGCAAGGA--TTTAAGGCAACGATACTCAGCTTTGCTG-AGGGTACTGTGCATCATCTATATGGCCTTTTCAGAGGATAGTTTGGCATAAT---------------------------------------------GAAGCAAG--AAGTTTGATACATGTGTGCCTTTGGGTGGGTAATTTTACTTCTGGGAATTCAGtcattcattcaacagatgtttgctgacctacccagtgtactgggtcccaaatagggtgctaggaagctggtggtgagatagatgtagttccca---cccccaaagcaccctcagCAGAGGCAGTACAATTACTGCGCAAGTGTCTATACAGGAACAGGGTAAGAAGTTCTGCAAAGGAACT----------------------------------------CCTGTTAt--------------------ggcttctgagtactagccctgtgctgagaagctgtgtgaccttgggcaagtccttctatctctctgagcct--GATGAAAGCAGCTCTTGGGCATCAAAGTCTAAGGAACTAATACCTATAGAAGAGCTGGCTCACAGGCCAGGCTTCCCTCT-----CCCTACAGGAGGCACTGTTGTAACTTCCTCAAAGAGTCA-TTGAAGTAGAGGCAATGGTCATATAACTGTAGGAATATACTAATACGTTATATACTATAGGCAGTATTTATATAATTACGTACTATAAGTCATATACTTTAGGAAGATTATTTTTTGGaagatgattttcatcgtatgtgaatcatatctcaataaatctgctattt a score=91.0 s hg17.chr17_random 203260 1 + 2618010 A s mm5.chr11 46262362 1 - 121648857 A a score=7533.0 s hg17.chr17_random 203261 119 + 2618010 AAAAAAAAAAGAAGT--------------TTGAACAAGAGACCAACTCTGCTA---AAAACT--CTGTTCTGGTGGGAAATGTGAGCTTTATGAAAATTAGACTTCCAGAAATGAGGAAAAACCCCTTTCCTAGGGGG s mm5.chr11 46262363 135 - 121648857 AAAAACAAAAACAATGACAATGACAATTCCTGAACAAGGGACAAACTCTGGTTTATAAAACTGGCTATCCTA-TGGGAGGCACGAGATTTGTAAAGATCCTATTTCCAAAGCATAGAAACATTCTCTT--CTGGGGCG s canFam1.chr9 38084153 110 + 53642819 -aaaaaaGGGAAAAT--------------CT--CTAACGGACCAACTCTGCTA---AAAATG--TTTTTCTGGTGGGAAACGTAAGCTTTATGAAAATTAAACTTCCAGAAGCAAAGAAAAACCT-----CAAGGGG- a score=1065.0 s hg17.chr17_random 203380 44 + 2618010 ATGGAGGGCGCCCCCCAGGGTTAACTTCAGGAATGTGTGTGTGA s canFam1.chr9 38084263 41 + 53642819 AAAAGGGGA---CTCTGTGATTAACTTCAGAAGTGGGCATGTGg a score=1832.0 s hg17.chr17_random 203438 72 + 2618010 GATGAAGGGACCACTTGCTTCTCGAAAACAACGTCTCGCC-------TTTGCCACAAAATAGCGTTGGGAAAATCCAAT s canFam1.chr9 38084686 76 + 53642819 GACAAAGGAACCACTTGCTCCTT--CCACTGCAGCTGGCCACTAATGTTTGCCACAGGGCAGTGCTGGGGTA-TCCTAT a score=300.0 s hg17.chr17_random 203510 1 + 2618010 G s mm5.chr11 46262565 1 - 121648857 G s canFam1.chr9 38084762 1 + 53642819 G a score=-127.0 s hg17.chr17_random 203511 23 + 2618010 ATTA----GGACAAAAGAAGGGCCCAG s mm5.chr11 46262566 20 - 121648857 GTTA----GGACAAAGG---TGACCAG s canFam1.chr9 38084763 23 + 53642819 ATTAGTAGGGACAGGAG----GCCCAC s galGal2.chr19 6615341 23 + 9463882 ----ATGGGAACGGAGCCGGGGCACAG a score=0.0 s hg17.chr17_random 203534 10 + 2618010 GAATCTCTCT a score=391.0 s hg17.chr17_random 203534 7 + 2618010 GAATCTC s mm5.chr11 46262586 7 - 121648857 GGACGCA s canFam1.chr9 38084786 7 + 53642819 GGATCTC a score=1299.0 s hg17.chr17_random 203541 3 + 2618010 TCT s mm5.chr11 46262593 3 - 121648857 TCT s rn3.chr16 1482299 3 + 90224819 TTT s canFam1.chr9 38084793 3 + 53642819 TCT a score=5866.0 s hg17.chr17_random 203544 38 + 2618010 CCAGGGACAGAAAGCTCTTTGAATACCTGCTGGCTTGA s mm5.chr11 46262596 34 - 121648857 CCAGGG---TAGAGCCCCATAGCT-TCTGCTAGCACCA s rn3.chr16 1482302 38 + 90224819 CTAGGGACAGCCAGTCCTTAAAGTGCCTGTGGGCCTGA s canFam1.chr9 38084796 38 + 53642819 CTAGGAACGAAAAGCTCTCCCAATCCCTGCTGGCTCCA s galGal2.chr19 6615364 36 + 9463882 CCATGGGGAGGATGCTCCT--GCTGCCTGCTGGCCCTG a score=0.0 s hg17.chr17_random 203582 8 + 2618010 TCTATACC a score=546.0 s hg17.chr17_random 203582 1 + 2618010 T s mm5.chr11 46262630 1 - 121648857 T s rn3.chr16 1482340 1 + 90224819 T s canFam1.chr9 38084834 1 + 53642819 T a score=-34.0 s hg17.chr17_random 203583 7 + 2618010 CTATACC s mm5.chr11 46262631 7 - 121648857 CTGCAGC s canFam1.chr9 38084835 6 + 53642819 TTGTA-C a score=-82.0 s hg17.chr17_random 203590 45 + 2618010 CCATAGCATGTCCCCATCCTCTGCCTGTCCGTTGGATGTAATTCC s mm5.chr11 46262638 42 - 121648857 TCACAGCTCG--CCTAGCCTCTGATTGTCC-CCAATTATCATTCC s canFam1.chr9 38084841 45 + 53642819 CCATAGCTTCTCCCCACCCTCTGCCCATTTGTTGGTTATAATTCC s galGal2.chr19 6615400 35 + 9463882 CGGCTGCGTGCTGATGTGCTGAGCCGTTTCCTTGC---------- a score=100.0 s hg17.chr17_random 203634 1 + 2618010 C s fr1.chrUn 320723459 1 - 349519338 C a score=4575.0 s hg17.chr17_random 203635 5 + 2618010 AGATA s mm5.chr11 46262680 5 - 121648857 AGATA s rn3.chr1 186180668 5 + 268121971 AGGTA s canFam1.chr9 38084886 5 + 53642819 AGATA s galGal2.chr19 6615435 5 + 9463882 AGTTA s fr1.chrUn 320723460 5 - 349519338 AGGTG a score=99505.0 s hg17.chr17_random 203640 81 + 2618010 CCTGAGGCCAGATGTGGACAAGAAATCCAAACATAAGACAGCGGTGAAGAAAAAAACCCTGAACCCGGAGTTTAATGAGGT s mm5.chr11 46262685 81 - 121648857 TCTGAAGCCAGATGTAGACAAGAAATCCAAGCATAAGACAGCAGTGAAGAAGAAAACACTAAACCCAGAATTCAATGAGGT s rn3.chr1 186180673 81 + 268121971 CTTGAGACCAGACGTGGATAAGAAATCCAAGCATAAGACGTGTGTAAAGAAGAAGACGCTGAACCCGGAATTTAATGAGGT s canFam1.chr9 38084891 81 + 53642819 CCTGAAGCCAGATGTGGACAAGAAATCTAAACATAAGACAGCAGTAAAGAAGAAGACCCTGAACCCCGAATTCAACGAGGT s galGal2.chr19 6615440 80 + 9463882 TTTGAAACCAGATGAGGACAAGAAGTCGAAGCATAAGACAGCAGTGAAGAAGAAGACGCTGAACCCCGAATTTAATGAGG- s fr1.chrUn 320723465 81 - 349519338 TCTGAAGCCAGATATGGGGAAGAAAGCTAAAAACAAAACCCAAATCAAAAAGAAGACCCTTAATCCAGAGTTTAACGAGGT s danRer1.chrUn 153141018 81 + 367113659 CTTGAAGCCTGACATGGGAAAGAAAGCGAAGTACAAGACTCAGATCAAAAAGAAGACCCTTAACCCTGAGTTTAATGAGGT a score=91.0 s hg17.chr17_random 203721 1 + 2618010 A s danRer1.chrUn 153141099 1 + 367113659 A a score=-432.0 s hg17.chr17_random 203721 12 + 2618010 ATG---AGGGGCTGG s mm5.chr11 46262766 15 - 121648857 ATGGCCAGGCTCCAC s rn3.chr1 186180754 12 + 268121971 AAA---AATGGCAGG s canFam1.chr9 38084972 12 + 53642819 ACA---AGGGGCTGG s galGal2.chr19 6615520 9 + 9463882 ------TGGGTCTGT a score=-2701.0 s hg17.chr17_random 203733 41 + 2618010 TGAAGCTTCATGAAGGCCA-TTCCTCTGCCCCACAGC--AGTGG s mm5.chr11 46262781 41 - 121648857 TGG-GCTTCATGAGAGCTG-TGGGGCTAGCCTG-GGCTGGGTGG s canFam1.chr9 38084984 42 + 53642819 CGAAGCTGCTGGGAAGCTGCTTGCTGTCCCCCAGGGC--AGAGG s galGal2.chr19 6615529 35 + 9463882 ----GGTTCTC---ACCCAATGGGCTTTTCTCAGTGC--TGTGA a score=-1905.0 s hg17.chr17_random 203774 43 + 2618010 GGGT--------GTGGCTGGGTTTTCAAAA--GGTC-ATGGCGGGA---TGGGGAGG s mm5.chr11 46262822 50 - 121648857 GGGTCTG---GAGGGGCTTGGTCTTCAAAA--GGGT-ACTGTGGGGAACTGGGAAG- s rn3.chr10 47601974 45 - 110733352 GGGA--------GGGACCTGGTCTTCAAAA--GGGTAACTGTGGGA-ACTGGAACG- s canFam1.chr9 38085026 46 + 53642819 ------GCCTGGAGGACTGAGTTTTCCAAG--AGCT-ACTGTGGAA-ACTGAGAGG- s galGal2.chr19 6615564 46 + 9463882 -------GTGAAAGGGAAGAATAAACCAACTTGGTC-ACTGTGGGA-AGGGGTGG-- a score=-1624.0 s hg17.chr17_random 203817 216 + 2618010 GTGGTCAGA-------------------GACGGTGGGGAGGGGCCG----------CACCAAGCCACAGACACAGGGGAG------------CTGGGGGACCC------CTGGAAAGCTCTTGGCAGGACT---------------TGTCGGAT---GTAGGGCTGGGGGGAGGGAA---------GTGNTTGAGGGGAGTCCTCGGTT-CCTCATGGAGGCAACAGGGC----AAAGAGGGGGTGAGGAAGATGGGGAGAAACTCTGTGTGGGGCAAGGGGACTCGAGACACCC s mm5.chr11 46262872 234 - 121648857 -CGGTAAGA-------------------GAGGGTAGGGAACAGTTG----------CCTCA-GCCATGG---TAGGTAAGGCTCTACCAAGTCTACTTGGCAA------TAGGGAAGCTCGTGG---GACTAAGAAGGTT----GATATTGAATCAGGTAGGGGTGGAAAGAGAGGATGTTCAGCAGCGTGTGAGTGACCTTCT--------------AGATGACAGGGTTGGGAAGAAAGATGTGGAGAGAATGAGGAGACATGCTAGGTAGGCTGTGGAGACTCAAGACACCC s rn3.chr10 47602019 230 - 110733352 -TAGTAGGA-------------------GAGAGTGGGGAGCAGCTGCCAGAGGAGCCCTCA-GCCACGG---TGGGTAAGGCT---------CTACCAGACTG------CTTGGCAA----TGG---GACTAAGGAACCTTCCAGAAGGTTAAT---GTTGA--TGGAAAGAGAGAATGTTGGGCAGC------------TCCTGAGTGACCTTCT--AGATAACAGAGTTGGAAAGAGAGATGTGAACAGAATGGGGAGACACTCTGGATAGGCTATGAGGACTCAAGTTACCC s canFam1.chr9 38085072 229 + 53642819 -TGGGAAGGGGCCACCAGGAGAGCCCCTGGCTGTGGGGGGCAGGGG-------AGAGACAAGGCCAAGG---TGGTACAG------------ATGGAGGACAGGGAAGCCTGGAAAGCTCTTCAGAGAATC---------------AAATTGAT---GGGACTGTGGCCATGTAGGATGTGGAG--GTGGAATGGAGGG-------------------ACCCAACAG---CCAGAGGGGAGGTGCAAGTGACACAGGG-GATGCTCTGGGTGGGATGTGAGAATCTGAGATGCCC a score=-94.0 s hg17.chr17_random 204033 209 + 2618010 TGGGGCCCCAGGAAGTCTTCCGCCCAAGGCGGCAAGTACGGCTGGAAATGCGGATTCCC--CCCAAGGAACAAG---AAGGAAAGAAGAGCAGAGGGGCCTTGGGTAGAGCCCACACCACACCAGTGATCCAGAGGCAGGCAGGGGAGGTCAAGATGCTTCCAGAGAGTGAGGGGAACCCCGGATGGAAGGGAGGGTCCCACAGAGAAGGGAGG s canFam1.chr9 38085301 134 + 53642819 CAGGGCCTTGAGAAGATCT---------------GGTCCAGGTAGATCCCCAGGTCCTCAGCCCAGAGGGCAGATGCACGTGGAGAGGAGCAGAGGGGC---------AAATCATATCATCCCAG-------------------------------------------------GAGCCTGTGA-------GAGAGTCTTACAAACAAGGGAGT a score=-31.0 s hg17.chr17_random 204033 1 + 2618010 T s mm5.chr11 46263106 1 - 121648857 C a score=1368.0 s hg17.chr17_random 204242 9 + 2618010 GGTCAGCAA s mm5.chr11 46263420 9 - 121648857 GGGAAGCAA s canFam1.chr9 38085435 9 + 53642819 GGTGAGCAG a score=4314.0 s hg17.chr17_random 204251 142 + 2618010 AGCCAGGCCCCAGAGAGGCCCAGGATGACAAGGACTGTGGGGCGTG-CAGTGCCTCT-------GCAGTCAGG-AGGCTCCCGGGGTGTGGGGAGAGCAGGCTCAGGGACA-AGGAGCAAGCGGGCGAGGGGACAGGGGCC--CTGAAGACCCC s mm5.chr11 46263429 133 - 121648857 GGCCAG-CCCCAGAG--------GATGGCAAAGACTCTTCACTAAGACAGTTCATC--------GCAGCCAGG-GTCTCTGCAGCATCTGGG---AGCAGCTTGAGGGAGACAGAAGGGCACGAGGGTGGAGGCAGGGGCCTGCTCAGCCTCCC s rn3.chr10 47602591 123 - 110733352 GGCCAG-TCCCAGAT--------AATGACAAAGACTTT--ACTAGACAATTGCAGCC-------AGGGTC-------TCTGCAGCACCTGCT---TGCAGCTTGAGGGAC--AGAAGGGTACGTGGGTGGAGG-AGGGGCCTGCTTAGCCTCCC s canFam1.chr9 38085444 144 + 53642819 AGCCAG-ACTCAAGA--------AACGCCAAGCACACCAAGGCTCCCATGTGTATATTAATCTAGCAGTAAGGAGGCTCTTGGGGATTTGGAGAGAGCAGCGTCAGTGACAGAGGAGCAGGTAGGTTGGAGGGCAGGGGGCC-CTGAGGACCCC a score=73.0 s hg17.chr17_random 204393 7 + 2618010 AGTGGAG s canFam1.chr9 38085588 7 + 53642819 AGCCAGG a score=73.0 s hg17.chr17_random 204393 7 + 2618010 AGTGGAG s canFam1.chr9 38085588 7 + 53642819 AGCCAGG a score=100.0 s hg17.chr17_random 204399 1 + 2618010 G s panTro1.chr19_random 2211207 1 + 57627672 G a score=9773.0 s hg17.chr17_random 204400 131 + 2618010 --CTCAGGGGGAAGTGGGCGAGACATGTGAGC---ATCCACCCATCATCCACT-CTGAGCACTGATCACCC-----CCATCCCTC-----CTCTGTCC-----------------CTACACCTCATACCCCTCCTGGCCCCCGGCGGAGGCCCAGGCCCAG--GCA s panTro1.chr19_random 2211208 135 + 57627672 --CTCAGGGGGAAGTGGGCGAGACATGTGAGC---ATCCACCCATCATCCACT-CTGAGCACTGATCACTC-----CTGTCCCTC---TCCTCTTTCC-----------------CTACACCTCATACCCCTCCTGGCCCCCGGCCGAGGCCCAGGCCTCGTGGCA s mm5.chr11 46263562 91 - 121648857 --TTTGGGAAGAAGTGGGC-AGCTTGGTTAGAGTGACCCCCACATTGACCACC-TTGAGGCTTGAGC--------------------------------------------------ACATGACAGACCTCTC---------------------AGCCAAGTGGCC s rn3.chr10 47602714 90 - 110733352 --TTCAGGCAGAAGTGGGC-AGCTTGGTTAGAGTGACCCC------------------ACACTGACCACTT-----CCATACTTC---AGC--------------------------ACATCACAGACCTTTC---------------------AGCCAGGTGGCC s canFam1.chr9 38085595 161 + 53642819 CTCTCAGGCAG-AGTGAATGGAATGGGTGAGA---ATCCACTC-TTGTCCACCATCGAGCACTGGCCACCCTTCATCTCTCCCTCCCTTGCTCTCTCCATTCATTCATCCCCTCACCACACCTCAGAGCCTTCCTGGCCACTGGCCAAGATCGAGGCCCTATGGCA a score=6354.0 s hg17.chr17_random 204531 12 + 2618010 TCAGCCCTAACA s panTro1.chr19_random 2211343 12 + 57627672 TCAGCCCTAACA s mm5.chr11 46263653 12 - 121648857 TTGGCTTTAACA s rn3.chr10 47602804 12 - 110733352 TTGGCTCTAATA s canFam1.chr9 38085756 12 + 53642819 TTGCTCCTGACT s galGal2.chr19 6615645 12 + 9463882 TTGGACTGAGCA a score=2796.0 s hg17.chr17_random 204543 8 + 2618010 CTC-CCTTC s panTro1.chr19_random 2211355 8 + 57627672 CTC-CCTTC s mm5.chr11 46263665 8 - 121648857 CCC-TCTTC s rn3.chr10 47602816 8 - 110733352 CCC-TCTTC s canFam1.chr9 38085768 9 + 53642819 CTCTTCTTC s galGal2.chr19 6615657 8 + 9463882 CTC-GTGGT s fr1.chrUn 341596699 8 - 349519338 CTG-CTTTG a score=209247.0 s hg17.chr17_random 204551 112 + 2618010 TTGCCAGCAGGAGTTCTGTTACGAGATCAAGCATGGGGACCTGGCCAAGAAGTCCCTGGAGGTCACCGTTTGGGATTACGACATTGGAAAATCCAACGATTTCATTGGTAAG s panTro1.chr19_random 2211363 112 + 57627672 TTGCCAGCAGGAGTTCTGTTACGAGATCAAGCATGGGGACCTGGCCAAGAAGTCCCTGGAGGTCACCGTTTGGGATTACGACATTGGAAAATCCAACGATTTCATTGGTAAG s mm5.chr11 46263673 111 - 121648857 TGGCCAGCAGGAATTCTGTTACGAGATCAAGCATGGAGACCTGGCCAAAAAGACTCTGGAGGTCACTGTCTGGGATTATGACATTGGAAAATCCAATGATTTCATCGGTAA- s rn3.chr10 47602824 111 - 110733352 TGGCCAGCAGGAGTTCTGTTACGAGATCAAGCATGGAGACCTAGCCAAAAAGACCCTGGAGGTCACTGTCTGGGACTATGATATTGGAAAATCCAATGATTTCATCGGTAA- s canFam1.chr9 38085777 111 + 53642819 TGGCCACCAGGAATTCTGTTATGAGATTAAGCATGGGGACCTGGCCAAGAAGACCCTGGAAGTCACTGTTTGGGATTATGACATTGGAAAATCCAACGATTTCATCGGTAA- s galGal2.chr19 6615665 112 + 9463882 CTCCCTGCAGGAGTTCTGCTATGAGATAAAGCACGGCGACCTGGCCAAAAAGACCTTAGAAGTCACTGTGTGGGACTACGACATTGGGAAATCAAATGACTTCATAGGTGAG s fr1.chrUn 341596707 112 - 349519338 TTTTCTGCAGGAGTTCTGTTACGACATAAAATATGCAGACCTCACCAAAAAGACCCTGGAGGTGACCGTGTGGGACTATGATATCGGGAAGTCCAACGATTTCATAGGTGAG s danRer1.chrUn 153141263 112 + 367113659 TTGATTACAGGAGTTCAGCTATGAAATCAAGCATGGTGAACTGGCCAAGAAGACTTTGGATGTTTCTGTCTGGGATTATGATATGGGAAAATCCAATGATTTCATCGGTGAG a score=2477.0 s hg17.chr17_random 204663 150 + 2618010 GGGGCATAGTGGGAACACCGTCTCACTGTGTGCCTGTCCTGGAT-------------------------CAGGCCACAGCCCCTCTTTCCTGG--TCCATGGGGAAAGCTGGAGCCACGGACCACCTGCCCCTAGGTCAG--GGGCCTCAGACCTTCTCC--AGCCTG-ACCC-TTGTGCCCC s panTro1.chr19_random 2211475 141 + 57627672 GGGGCATAGTGGGAACACCGTCTCACTGTGTGCCTGTCCTGGAT-------------------------CAGGCCACAGCCCCTCTTTCCTGG--TCCATGGGGAAAGCTGGAGCCACGGACCACCTGCCCCTAGGTCAG-----------ACCTTCTCC--AGCCTG-ACCC-TTGTGCCCC s mm5.chr11 46263784 101 - 121648857 GGTACATGAAGGGAAGGCCACTTAGCTGTGTGCCTGT-----------------------------------------------------------------------------CCAAGAACCACTTTACCCCTAGTGAATGGGATCTCAGGCACTCTCC--AAACTATAATC-ATGTGAC-- s rn3.chr10 47602935 101 - 110733352 GGAATATGAGGGGAAGGCCACTTAGCTTTGTGCCTGT-----------------------------------------------------------------------------CCAAGAACCACTTACCCCTA-GTGAGTGGGATCTCAGACACTCTCC--AAACTATACTCAACGTGAC-- s canFam1.chr9 38085888 178 + 53642819 GAGGAACAATGAGAATACCGTTTAGCCACAGGCCTATTCTGAATTCATAGAGGGCAGTGTCCGTAAATCTAAGCCACAGCCCCTCCTTACTGGCCTCTATGGCCCCAGCTTT--CCCCAGACTATCTGCCCTCAGAAACAAGGGGCCTCAGACCTTCTCC--AGCCTG-ACTCTATGTGACAG s galGal2.chr19 6615777 146 + 9463882 TGGGGCCCCTTGGAGCACCCAGTGTCTG-ACAGCTGTCGTGGAG------------------------------AACAAACATTCCTTGTTTTTCTCTCCTTTCTCAATTTCTCCCCTGGCTTTTCTCCCAGTGGAGAAG--AGGTCCCAACTCTTCCCCCTCACCTC-CCTT-TTCCTTC-- a score=45467.0 s hg17.chr17_random 204813 160 + 2618010 AGGAAGAGACAGGCCCAGGGATGGAAG-GAGTTCTGGGAGGGTCACACAGCACTCTGTGGTGGAGCACAGACAAGAGACAATGATGGGCAGTGCC----TCGGGCTGGACTCTGAG-----------CCCTAGAGGCCCCAAATTCCCAGTGGGCCTGGTGGCTGCGCATAG---TGGG s panTro1.chr19_random 2211616 160 + 57627672 AGGAAGAGACAGGCCCAGAGACGGAAG-GAGTTCTGGGAGGGTCACACAGCACTCTGTGGTGGAGCACAGACAAGAGACAATGATGGGCAGTGCC----TCGGGCTGGACTCTGAG-----------CCCTAGAGGCCCCAAATTCCAAGTGGGCCTGGTGGCTGTGCATAG---TGGG s mm5.chr11 46263885 135 - 121648857 ---AGAAGAGAGGCCCAGGGA--------------GGGGAGACCTCACAGCA-TCTGTGGTG--ACATAG---------AATGATGGTCAACTCCCGAGTGGGTCAGCACTCAGAG-----------CCCATGGGACCACAAGTTTCT-GTGGGCATGACATTGGTACACAA---TGGG s rn3.chr10 47603036 151 - 110733352 ---AGAAGACAGGCCTGGGGAGGGGAG-GAAGCCTGGGAAGACCTCATGGCAGTCTGTGGTG--ACACAG------AATGATGATGGTCAGCACCTGAGGGGGTCAACACTCAGAG-----------CCCATGTGACCAC--GTTTCTGGTGGGCATGACTTTGGTACATAG---TGGG s canFam1.chr9 38086066 161 + 53642819 AGGAATAGATAGGTCCGTGAAAGGGAGAGAAGTCTGGGAGGGTCACACAGCAGCCTGTGGTGGAGCAGGGGTGAGAGATGATGATGG----TGTT----TTGGGCTGGACTCTGTGGAACAAAAAGCTTCAGGTGGCCCTGAATTCCTGGT----------TCTATGCATAGCCATAAA a score=13033.0 s hg17.chr17_random 204973 162 + 2618010 GCTGCCCGGCCCTTTCTCCCCTCTTCAGGCCCCCATTCCTTGACCCCTGATGCTGCCTCTGCACCCTGCCC-----CTATCCCTG-CCCTGGTGGAAGAGAGACAGGATG------GCTGGGCC--------CT------------GACGGGGCCAGA------GTGTGGCA-----TGGAGGTCAG---GTC-CTGTTCATGCTCAGA s panTro1.chr19_random 2211776 162 + 57627672 GCTGCCTGGCTCTTTCTCCCCTCTTCAGGCCCCCATTCCTTGACCCCTGATGCTGCCTCTGCACCCTGCCC-----CTATCCCTG-CCCTGGTGGAAGAGAGACAGGATG------GCTGGGCC--------CT------------GACGGGGCCAGA------GTGTGGCA-----TGGAGGTCAG---GTC-CTGTTCATGCTCAGA s mm5.chr11 46264020 155 - 121648857 CCACTGTAGCCCTTCCTCCCCCTTTTCACTCCCTACT------------ATG-TACCATTGAACCCTGCCCCA-CACTGTTCTGGTCCCTGGTAGAGGAGAAACATGACATCAAACACTGGGTC-----------------------AAGTGGGAAGG------GTGTGGC------TGGAAGCTAG---GGG-CTGTCCACACACAA- s rn3.chr10 47603187 149 - 110733352 GCACTATAGCCCTTTCTCTCCTTTTTA-CTCCCTACT------------ATG-TGCCATGGAACCCTGACCCA-CACGGGC-----CCCTAGTAGAGGAAAAACATGACATCAAACACTGGGTC-----------------------AAGTGGTTAGG------GTGTGGC------TGGAAGCTAG---GGG-CTGTCCACACACAA- s canFam1.chr9 38086227 157 + 53642819 GCCGACTAGA----------------AATTCCCTAAA------------ACA-TGACGTTGCACTTCACCCCAGCATTGCTCCGT-CCTGGAGAGGGGAAGGACAGGATC------CCAGGGCC--------CTGATCAGGTGGGGGAAGGGGGCAGGCTAAGAGTGTGGTG-----TGGTGGTCAG---ACCACTGCCCACCCTCAGA s galGal2.chr19 6616134 160 + 9463882 GCTGCCCTTCTCCATCCTCCCGCTTTGTGCTCCATCCCCACGTGCCTTCCTGCTGCGTTTCTGCTCTGCTT---------TCCTC-CCCTTGTGCA--------------------CCTGAGCCTCCTCTCCCC------------GACCGGAGCAGG------CAGCGGCAGCAGCAGCAGCTCAGCCCGCC-CTCCTCACTTCCAGA a score=3980.0 s hg17.chr17_random 205135 24 + 2618010 ACCCAGCGGGCAGTG-GGAGAGGCT s panTro1.chr19_random 2211938 24 + 57627672 ACCCAGTGGGCAGTG-GGAGAGGCT s rn3.chr10 47603336 16 - 110733352 -----ATGGGCAGGA-GGGAAG--- s canFam1.chr9 38086384 25 + 53642819 GCCCAGTGGGCAGGGTAGAGAGTAC a score=91.0 s hg17.chr17_random 205158 1 + 2618010 T s fr1.chrUn 254675328 1 + 349519338 T a score=-37056.0 s hg17.chr17_random 205159 71 + 2618010 GGCCTTCGAGCACAGAACCT----------------GG--GAGGG---GGCATGG----GCCCCA----------------------------------CGCCTGGGAGTTGGGGG---TCCCTGTG--CCCCAG s panTro1.chr19_random 2211962 71 + 57627672 GGCCTTCGAGCACAGAACCT----------------GG--GAGGG---GGCATGG----GCCCCA----------------------------------CGCCTGGGAGTTGGGGG---TCCCTGTG--CCCCAG s mm5.chr11 46264175 35 - 121648857 ---------------------------------------------------ATGG---------------------------------------------GTCTGGACGCTGGGGG----CACTGAAATCCCTAG s rn3.chr10 47603352 30 - 110733352 ----------------------------------------------------------------------------------------------------GCCTAGACACTGGGGT----CACTGAA-TTCTTAG s canFam1.chr9 38086409 123 + 53642819 AGCCTTGGAGCACAGAATCTGGAAAGGGTAGTTTTGGG--GGAGG---GGCACTG----GTTCCAGAGAGATGGTCTTATGGGAGTACCTGCCCCCAGGCCCCTGGGAGTCAGAAGG--TCACTGTG-TCCCTGG s galGal2.chr19 6616471 79 + 9463882 GACCTGCGAGTGGGGGCTGT----------------GG--GGAGGGCTGGCATGGCTGTGTCCTG-------------------------------------CTGTGCCCCAGCATGTCCCGTTGCA-CACCCAC s fr1.chrUn 254675329 54 + 349519338 GGACAGCTAGCGCAGATGCT----------------AGCTGCACG---GTCAGGG----ACCCTC-----------------------------------ACCTCAGGGCAA----------------------- a score=5578.0 s hg17.chr17_random 205230 20 + 2618010 CTGCCCCTCCTGTC-C---TCCTG s panTro1.chr19_random 2212033 20 + 57627672 CTGCCCCTCCTGTC-C---TCCTG s mm5.chr11 46264210 21 - 121648857 CTGCCCCTCTGATCTC---TTCCG s rn3.chr10 47603382 20 - 110733352 CTGCTCCTCTGTCT-C---TCCCG s canFam1.chr9 38086532 23 + 53642819 CTACCCCCTTGACT-CCCTTCCTG s galGal2.chr19 6616550 20 + 9463882 ATCTCCTCTCTGTC-T---CTCTC s fr1.chrUn 341597014 19 - 349519338 CTGACCCTC-GGTC-T---TGTTT a score=196714.0 s hg17.chr17_random 205250 104 + 2618010 CAGGTGGTGTGGTTCTGGGCATCCACGCCAAGGGGGAGCGCCTGAAGCACTGGTTTGACTGCCTGAAGAA-CAAGGACAAGCGCATCGAGCGCTGGCACACGCTC s panTro1.chr19_random 2212053 105 + 57627672 CAGGTTGTGTGGTTCTGGGCATCCACGCCAAGGGGGAGCGCCTGAAGCACTGGTTTGACTGCCTGAAGAAGCAAGGACAAGCGCATCGAGCGCTGGCACACGCTC s mm5.chr11 46264231 104 - 121648857 CAGGTGGTGTGGTTCTGGGCATCAACGCCAAGGGCGAGCGCCTGAAGCACTGGTTTGACTGCTTGAAGAA-CAAGGACAAGAGGATTGAGCGTTGGCACACGCTC s rn3.chr10 47603402 104 - 110733352 CAGGTGGGGTGGTTCTGGGCATCAATGCCAAGGGTGAGCGCCTGAAGCACTGGTTTGACTGTCTGAAGAA-CAAGGACAAGAGGATTGAGCGTTGGCACACGCTC s canFam1.chr9 38086555 104 + 53642819 CAGGAGGTGTGGTTCTGGGCATCAATGCTAAGGGTGAACGCCTGAAGCACTGGTTTGACTGCCTGAAAAA-CAAGGACAAGCGGATAGAGCGCTGGCACACTCTC s galGal2.chr19 6616570 104 + 9463882 AAGGTGGAGTCGTGCTGGGGATCAACGCCAAAGGCGAGCGGCTGAAGCACTGGTTTGACTGCCTGAAGAA-CAAGGACAAGAAAATCGAGCGCTGGCACACGCTG s fr1.chrUn 341597033 104 - 349519338 CAGGTGGCGTCTCTCTGGGCATCAATGCAAACGGCGAGCGGCTCAAACACTGGTTCGACTGCCTCAAAAA-CAAGGACAAGAAAATTGAGCGCTGGCACACGCTG s danRer1.chrUn 153143521 104 + 367113659 CAGGTGGATGCCAGCTGGGAATCACCGCCAAAGGCGAATGTTTGAAACACTGGTATGAATGTCTGAAAAA-CAAGGACAAGAAGATCGAGCGCTGGCATGTTCTC a score=46806.0 s hg17.chr17_random 205354 54 + 2618010 ACCAGCGAGCTCCCAGGGGCTGTGCTCAGCGACTGAC----GCCCACCCGCCACTG---CT s panTro1.chr19_random 2212158 54 + 57627672 ACCAGCGAGCTCCCAGGGGCCGTGCTCAGCGACAGAC----GCCCACCCACCACTG---CT s mm5.chr11 46264335 56 - 121648857 ACCAATGAGCTCCCAGGGGCTGTACTCAGCGACTGACTG--TCCCATCTGCTGCCA---CC s rn3.chr10 47603506 56 - 110733352 ACCAATGAGCTCCCAGGGGCTGTACTCAGCGACTGACTG--TCCCATCTGCTGCCA---CC s canFam1.chr9 38086659 61 + 53642819 ACCAACGAACTCCCAGGGGCTGTGCTCAGCGACTGACCAGCCCCCACCTGCTGCTGCACCC s galGal2.chr19 6616674 51 + 9463882 ACAAACGAGCTGCCAGGGGCTGTCCTCAGCGACTGAG-------CACCCGGCACTG---CT s fr1.chrUn 341597137 51 - 349519338 ACCAATGAATTACCCGG---TTCATTAAATGACTGAA----GAGCTCGCTGTACCC---CC a score=4227.0 s hg17.chr17_random 205408 15 + 2618010 ACCCCTG-CCGCCACC s panTro1.chr19_random 2212212 15 + 57627672 ACCCCTG-CCGCCACC s mm5.chr11 46264391 13 - 121648857 CACCCT---TGCCACC s rn3.chr10 47603562 13 - 110733352 CACCCT---TGCCACC s canFam1.chr9 38086720 16 + 53642819 ACCCCTGCCTGTCACC s fr1.chrUn 341597188 15 - 349519338 GACCCCG-CCCCCAAC a score=21951.0 s hg17.chr17_random 205423 51 + 2618010 TGCGCC-CAGCACGGCCGGCCCCGGGCTTCCCCAGCAGCCACCAAGGCCTGT s panTro1.chr19_random 2212227 51 + 57627672 TGCGCC-CAGCACGGCCGGCCCCGGGCATCCCCAGCAGCCACCAAGGCCTGT s mm5.chr11 46264404 44 - 121648857 CGGCCC-ACACAGGTCCAACCCTGGGCTTTCTCAGCTGCCGCCAA------- s rn3.chr10 47603575 51 - 110733352 CAGCCC-ACACAGGTCCAACCCTGGGCTTTCTCAGCTGCCACCAAGGGCTGT s canFam1.chr9 38086736 52 + 53642819 TGGCCCGGCACCGGCCTGGCCCTGGGCCTCCTCAGCTGCCACCAAGGGCCTC a score=43241.0 s hg17.chr17_random 205474 444 + 2618010 GGCCCCCACACTGGGGGAGATCCAGAACCCCTGCTTGGACACAGAGCCACTG---CAGTCCCCGCTCGGAGGATGT-------GGAGGGCTCAGCCACTCTGGGACGGGGAGGGCAAGGAGCTGGGGTGGGGG-----GCTCTCAGCTCTCTGGG--GCCCAAGA-GGCCGGTGGTGGAAAGAGACCTCAGCACCTGC------CCAGGGGAA---GGGGACACGCCCATCT-GGGAGCAAAGACCCTTCTAGAG-GC-----------------CAGCCCCGG-CTGAGAGGACAGGAGTGTGGGGGCGCC-------TTGGC--GGACAGTGGGAA--CAGAGGAGGGAGGTGGTGAGCAGACAGACAGGTGGAGGATGGG-------ACCTTGAAGACTGGCTGCTCCAGCCCAAGAAAG--CCTAACTGCATCC-CTCATCTCC-TTCGCTGCTGGACAGATGG-AAGAAGCGGGCCTGCCGGCCGAAAGTCTGCCAGAGTTCCCGGAGG s panTro1.chr19_random 2212278 445 + 57627672 GGCCCCCACACTGGGGGAGATCCAGAACCCCTGCTTGGACACAGAGCCACTG---CAGTCCCCGATCGGAGGACGT-------GGAGGGCTCAGCCACTCTGGGACGGGGAGGGCAAGGAGCTGGGGTGGGGG-----GCTCTCAGCCCTCTGGG--GCCCAAGA-GGCTGGTGGTGGAAAGAGACCTCAGCACCTGC------CCAGGGGAA---GGGGACACGCCCATCT-GGGAGCAAAGACCCTTCTAGAG-GC-----------------CAGCCCTGGACTGAGAGGACAGGAGTGTGGGGGCACC-------TTGGC--GGACAGTGGGAA--CGGAGGAGGGAGGTGGTGAGCAGACAGACAGGTGGAGGATGGG-------ACCTTGAAGACTGGCTGCTCCAGCCCAAGAAAG--CCTGACTGCATCC-CTCATCTCT-TTCGCTGCTGGGCAGATGG-AAGAAGTGGGCCTGCAAGCCGAAAGTCTGCCAGAGTTCCCGGAGG s mm5.chr11 46264448 337 - 121648857 ------------GGGCAAGATCCAAGTTGTCTGCTCGGACATAGA--CAGTG---CAGCCCCTGCTAGGAGGCCA--------AGAGCACCCAGCCTCCCTCAGAGGGACAGGAAAACACAACATGATACCTG-------TTCCAGCTCCCTGGGC-ATCCAAGCTGGCCAGAGCTGG-GGGAATCCTCAGCCTCAGC-TCCATCCAGAGGAA---GGG-------CTATCT--ACAGTGAGGA-CCTATTGGAG-GT----GAGGGGT-----GGAGCCCTG--CTGCAAGCCCAGAA--ATGGGGGTACT-------CTGGC--TGCCTG-GAGAC--TACAGGGAGGA--CAATGGGCAGGCAG--------------------------------------------AGCCCAGGA---------------------------------CTCCAGGACAGACAA-------------TGT--------AGCCAGCCAGAGCTTCCAA--- s rn3.chr10 47603626 360 - 110733352 GGCCCTCACAATGGGCAAGATCCAGGTTGTCTGCTCGGACATAGC--CACTG---CAGCCCCTGCTAGGAGGCTAGGAGGCCAAGAGCACCCAGCCTCTCGCAGAGGGACAGGAAAACACAACATGAAACCTG-------TTTCAGCTCCCCTGGCACCCCAAAG-GGCCAGAGCTGGGAGAAATCCTCAGCCTCAGC-TCTGTCCAGTGGAA---GGG-------CTATCT--ACAGTGAGGA-CCTATCAGAG-GT----GAGGGGT-----GGAACCCTG--CTGCAAGCACAGAA--ATGGGGGTACT-------CTGGC--TACCTG-GAGAC--CACAGAGGGAGGACTATGGGCAGGCAG--------------------------------------------AGCCCAGGA---------------------------------CTCCAGGACAGACAA-------------TGT--------AGCCAGCCAGAACTTCCAA--- s canFam1.chr9 38086788 446 + 53642819 GGCCCTCATCTTGGGGGAGATCCAGGATGCCTGCTCGGACACAGAGCCACCG---CAGCCCCTGCTTAGAGGCTGT-------GGAGGGCCTAGTCCCTTCAAG-------GGACAGCAAGACCAGAGAGCTGGGCCTGCTTTCAGCTCCTGGGG--CCCCAGAG-GGCAGGAGGTAGGAGAGGACCCTGGCCTCAGCATCCACCCCAGGGAA---GGGAATGGGGTCACCCAGGGAGTGAGGACCCTACTGGAG-GTCAACCAGAAATCACAGGGACCCCAGG-CTG--AGAACAGGAGTGCAGGGGAGCC-------TTGGCAGGGCCAGTGAGAACTCCCAAGAGGGATATGGGGGGAAGG-AG-----------------------ATTTGGGAAAGTAT-------TACCAAAAAGAGGTTCCTACTACATCTGTTCATCTCT-GGCATTAGTGGGCAGGTGGGAAAAAGTTGACCTGAGAGCAG--AGTATGATAAAGTTCCTACAGG s fr1.chrUn 165970776 426 - 349519338 GGACAACATCCTGGAGGGGGCCACCAGCCCATCACAGGACACAGGTCCCCTGAGACAATTTTCTGTTGTAGGAGC--------GAAGCAC-----------AAGAGGGCAAAGACGGGGTAAGGAGGGAACTA----------------------------AAGA-GGAAGAATGATTGAAAAATGTGAAACAACAGC------AGAGTGGAACATGGGAACGTACTCGCCC-GGCCACAAAGAGGCTGCAGGAATGT---------AT------AAACACAGGGCTGACTTTCCTGGGGAGTCTGGGTGTCTGATGAATGGGC--TGTTTGTGAGCTGCCACAAAAAGGATGCTGGGATTTAAAACACAGGAGGGGAACGCGCGTTCTTACGTGCGAGAGC---------TCTCCAAAAAATGCCTGGTTTTGACTCTTCCACTTCCAAACACCACTGAGCAGAAGT-AAGAGACACGCCAGC--GCCTGAGGTGAGCAGGA----CCGGAGG a score=188062.0 s hg17.chr17_random 205918 1023 + 2618010 CTCCTGATG---ATGGGTAA-ATTGGCACATGCTTCACTCAATGATTCCACAAGCCCTGGGgg-tgaatgagacacagggcctgccctcagggagttcc-catctagtcaggaagctgggaacaaaccattcca-actggg-gtgagaaataccaagaccagcttggccagtctgcaagtaccgtgggctctgctgact-ctgccg---ggaggtcagggacggcttcctggaggaggcggtgcttccg--taaggccttggagggtgagtgagggctt-----ct---------------aaaagcagtccaggcagtgggagtggtctaaaac-gcctggagagagaaagCCAATGGGGCCGGGG-TGC--TGTG---GACCCAGGGTCTCCTCTCCAGGGGAG----GGTTTGTTAGGA-AGGTGTGAGGCTCGAGGCAGGAGGT------------------------------------------------------------------------------GGGGGACGTGATGGAAACACCATGGAGAA--ACTGGT---------GTAGGCTCAAGTTCAGACCTCAGACCCAAGTCTCCC-ACTCTGATCTCTTTCTACTCCTGAGGGACCTCAAGGACGGAGCCCGCCCCTCCTCCTTCCTGGCATAAGCATCAGGTCAGCTGCAGTGGA---GAAAAGGGTCCC--------TTGTGCTTGGGAAAAAAAGCAAGCATTCCTACACGTCCTGAC----TCTGCCCTTTCCCCTCCCCTCCA-CTCCATGGCTCACACT---GG-----GGGCCTCCGGGTGCTTGCTCGTGGCATCTTGGTCCCACTACCGCCACAGATGTCCCTTTTGGGAGTAATCAGTGG-CCGTCCAGGGCCTTGTCTCTGGGGAGGCCTGTGGGGCCAGCTCCACCCTCCAGGAGCTGAGCAAGAATCACCCTGGCTGGTGGGCCTGTCTGCTCCCCTGAGTGAGACTCCCCAGGAGGCTTGAGAGTA--TCTGAATCTTGGGGCCCATGCCTGAAGCCCACAAACTTTCTCTGCCTACCAAGGGCCCCTCAGGAACGCTGGGTGAACAAATGCAGAGCCAAGGAGTTGCACAG-----CCAGAGTCCCAGTGTGCTCAGCCCATCAGTGTG-TGATggaa-ac--aggcccagagaggt s panTro1.chr19_random 2212723 1024 + 57627672 CTCCTGATG---ACGGGTAA-ATTGGCACATGCTTCACTCAATGATTCCACAAGCCCTGGGgg-tgaatgagacacagggcctgccctcagggagttcc-catctagtcaggaagcc-ggaacaaaccattcca-actggg-gtgagaaataccaagaccagcttgaccagtctgcaagtaccgtgggctctgctgact-ctgccg---ggaggtcagggaaggcttcctggaggaggcggtgcttccg--taaggccttggagggtgagtgggggctT-----CT---------------AAAAGCAGTCCAGGCAGTGGGAGTGGTCTAAAACGGCCTGGAGAGAGAAAGCCAATGGGGCCGGGG-TGC--TGTG---GACCCGGGGTCTCCTCTCCAGGGGAG----GGTTTGTTAGGA-AGGTGTGAGGCTCGAGGCAGGAGGT------------------------------------------------------------------------------GGGGGACGTGATGGAAACACCATGGAGAA--ACTGGT---------GTAGGCTCAAGTTCAGACCTCAGACCCAAGTCTCCC-ACTCTGATCTCTTTCTACTCCTGAGGGACCTCAAGGACGGAGCCCGCCCCTCCTCCTTCCCGGCATAAGCATCAGGTCAGCTGCGGTGGA---GAAAAGGGTCCC--------TTGTGCTT-GGAAAAAAAGCAAGCATTCCTACACGTCCTGAC----TCTGCCCTTTCCCCTCCCCTCCA-CTCCTTGGCTCACACT---GG-----GGGCCTCCGGGTGCTTGCTCGTGGCATCTTGGTCCCACCACCGCCACAGATGTCCCTTTTGGGAGTAATCAGTGG-CAGTCCAGGGCCGTGTCTCTGGGGAGGCCTGTGGGGCCAGCTCCACCCTCCAGGAGCTGAGCAAGAATCACCCTGGCTGGTGGGCCTGTCTGCTCCCCTGAGTCAGACTCCCCAGGAGGCTTGAGAGTA--TCTGAATCTTGGGGCCCATGCCTGAAGCCCACAAACTTTCTCTGCCTACCAAGGGCCCCTCAGGAACGCTGGGTGAACAAATGCAGAGCCAAGGAGTTGCACAG-----CCAGAGTCCCAGTGTGCTCAGCCCATCAGTGTG-TGATggaa-acagaggcccagagaggt s mm5.chr11 46264785 874 - 121648857 --CTTGCTT---GTGCATTG-ATGGGCAGATA-----------GACTCCGTGAGCCTCTGGGA-------------------------CGGGGATTCCC-ACTCTAGCAGGGCATCTGGGTGCACATATTGCTACAAAGGG-GTGCAGCATACCAGAACCAGCCAGTT--GTCTGCAGGGGCTGTGGGTACTGCTGACTGCTGAAGGGTGGAGGGCAAGGAAGGCATCCCATGAGAGTCAGGGC-TCAG--CACAGTCTTGAAAACCCAGCTGTGGCTTGAAAGCT---------------AGGAGAAAACCAAATACAGAAA-------AGAGGAGGCCTGAAAGAGGGTACCA--GGGGACAGGG-AGCCATGGG---GGCCTAGGGT---TGCGCTAGGGCAGCATTGGGCTTTTAGGC-AGGAGCTAGGCTT-------------------------------------------------------------------------------------------AGGGATGTG-TACAAGCACTTGGGAAAC--AATG-----------------------------TTCAAACCCAAGCTCTCC-CATTTGATCT-----TGCTCCCAAGGGGTCTCAAT------GCACACTGCTCCT-GTTCTCAGCGTAAATTCCCAGTCAGCTTCAGGGGAATGAGAAAGGGATCC--------TACTAATG-TGGAAAGAAGCAAGCATCCC------TCCTG------CCCACCTGTCCCTCCCTTCTTCATCCCCTCAGCTCAAGCT---GGTGTTAGGTCCTTC--ACGGCTACCTATGGCATCCTGGCCCTATCA-------AGACAGTC------AGGACCAGCAGTGGAAAATAGAAAGCCTTGTTTGGGGGAAGGTGGAGGGATGGGGGTTCTGCCCTCAGGAGCTGAG-------AACTCTGGCC----------TCAGTTTCTAGGAAAGGG------TAGGACACTGGTCAGT-----------------------CTTGAAGCTCCCAACTGCCTCCTGCCAACTGGGA----TTCAGGAGCACAGGGGGAACAG----GGAACCAAGGAGTTCCACCATCATCTCAGAGCCCCATTTTCCTCAATCCATCACTGAG-TGATAAGA----------CACTGGGGT s rn3.chr10 47603986 874 - 110733352 --CTTGCTT---ATGCGTGGCATTGATGGACAGATA-------GAGTCTGTAAGCTTCTGGGG-------------------------TGGGGGTTTCT-AGTCTAGCAGGGCATCTGGGTACATATATTGCTACAGAGGG-GTGAGGCATACCAGGACCAGCCAGCT--GTCTGTAGGGCCCATGGGTACTGAAGACTGCTGAAGGGTGGAGGGCAGGGAAGGCATCCTGGGGGAGTCAGGGC-TCAGCACAAGTCTTTGAAACACCAGCTGTGGCTTGAAATCT---------------AAGAGAAAACCAGATACAGACA-------AGAGGAGGCCTGAAAAAGGTTACCA--GGGGACAGGG-AGCCTTGGT---AGCCTAGAGT---TCCCCTGGGGCAGCACTGTGTTT---------------------------------------------------------------------------------------------------------------GGGGATGTA-TACAAACATTAGGAAAACTGAATG-----------------------------TTCAAACTCAAGCTCTCC-CGTTTGATCT-----TGCTCCCAAGGG-TCTCAAT------GCACACTGTTCCT-GTTCTCAGCATAAATATCCAGTCAGCTTCAGGGGAAAGAGAAAGGGATCC--------TACTAACA-GGGACAGAGGCAAGCATCCC------TCCTGCCC--TCCCGTCCCCCCCCCCTTTGTCAT-CCCCTCAGCTTGGGCT---GATGTTAGGTCCCTC--ACAGCTCCCCATGGCATCCTGGCCCTATGG---AGACAGCTGGTTGCCTTTGGGGCTGGCAGTGGAAAGTAGAGAGCCTTAGGTTGGGGGAAGGCCGGGCATGGGGGTTCTGCCCTGAGGAGCTGAG-----------------------------CGCTCCC-----------TTCCTAGGAAAGGGTAGGGCACTTCTTAGTCTTGAAG-------------CTCCCGACTGTCTCCTGCCAACTGGGG---CTGCAGGAACATAGAAGGAACAGGGAACAAACTGAGGAGCTCTACCATCATCTTAGAGCCCCATTTTGTTCAGCCCATCACTGGG-TGATAAGA----------CATAGGGGT s canFam1.chr9 38087234 1093 + 53642819 CTCTCACTGAACATGGGCG--ATTGGCAAGCACTTCACTCAATGTTTCCATGAGCCCTTGGGGATGAATGagacccagggactgccctctgagagttccttggctaatcaaggaactagaaacaaaccattaca-acagggaatgaggaatgccaagacctggctgacatacctgtgagtggcctggactct---gact-ctgctg---ggagg-cagggagggtttcctggaggaggtgatgcttcag--caaggccttgaagggtgagt-atagttt-----ctaggcagacaaaggggaagggcggtgtgtgcagcagga-------atggAAGG-----AAGAGTATGGTGATTGGGCTAGGGTTGC--TGTGCAAGACCTGAGGTCT-CCCCTAGAGACAG----AGTTTGTTAGGACAGGAGTGGGGCCT---ACAGGATGTCAcccacccctgctccaacccccacccctgctccaacccccaccccTGCCTGCCAGGCCAGCCTCAGCTCATAGCTTGGGGGGAAGTGATGGAAGCACTGTGGTGAA--ACTGATCTTGGGGCAGCAGGGTCAAGTTCAGTCCTTAGACCCAGTTCTCCCACCTTTAATCT--TTCTCCTCCCAAGGAGCTTCGAGGATGGATCCTGCCTTTCATTCTTACTAGCATAAGCATGAGGTCAGCTATCATCAA---GAAAAGGATCCCCCCCCCCTTTTTTTCA-TGAAAAGAAGCAAAAAATCC---TCATCTTCACCTTTTCCTCCCCTTTGCCCACCCCCCA-CTTCTGAGTTCAGGGCCAGGGAGTGAGAGGCCCA--GGTGATACCCAT-ACATCCTGGCTCTGCTGGGGCCACTGGTGTCCCTTTCGGGAGTGCTGGGTGG-GAGTCCCGGGCCTCATTTCTGGGAAGGCCTGTGAGGCTGGATCCCGCTTCCAAGAGCCAAG---AGAGACCCCTGCTTGGTGGGCC----TGGCACCCTGAGTCAGA-------------TGGAGGGTA--TCGGGATTTTGGAGCCCAAGTAGGAAGCCC-CAAGCTTTTCCTGCCTACCAAGGAGACTTCAAGACTGCCGTGTGAACAAATGCGGAGCGAGGGGAAT----------------------GTCTGTTTGCCCCAGCACTGCACTAATGCAAAACAGAGGCCCAGAGAGGG a score=300.0 s hg17.chr17_random 206941 1 + 2618010 c s panTro1.chr19_random 2213747 1 + 57627672 c s mm5.chr11 46265659 1 - 121648857 C a score=15.0 s hg17.chr17_random 206941 7 + 2618010 --caggtga s canFam1.chr9 38088327 9 + 53642819 GAAGAGTAA a score=129.0 s hg17.chr17_random 206942 6 + 2618010 --aggtga s canFam1.chr9 38088328 8 + 53642819 AAGAGTAA a score=831.0 s hg17.chr17_random 206942 6 + 2618010 --aggtga s panTro1.chr19_random 2213748 6 + 57627672 --aggtga s canFam1.chr9 38088328 8 + 53642819 AAGAGTAA a score=2508.0 s hg17.chr17_random 206948 44 + 2618010 cctgcccaggg----ccttccaggccccacacagctgg----aaccaggatc s rn3.chr10 47604860 41 - 110733352 CCTGCCCTAAG----CCT---GGGCCTCCTACAGTTGA----AATAAGGACT s canFam1.chr9 38088336 52 + 53642819 CCTGCCGGAGGGAGACCTTCCCGCCCCACCACAGCAGGGGTAAGCCAGGCTC a score=2403.0 s hg17.chr17_random 206948 27 + 2618010 cctgcccaggg----ccttccaggccccaca- s panTro1.chr19_random 2213754 26 + 57627672 cctgaccaggg----ccttcca-gcCCCACA- s rn3.chr10 47604860 24 - 110733352 CCTGCCCTAAG----CCT---GGGCCTCCTA- s canFam1.chr9 38088336 31 + 53642819 CCTGCCGGAGGGAGACCTTCCC-GCCCCACCA a score=4059.0 s hg17.chr17_random 206975 17 + 2618010 cagctgg----aaccaggatc s panTro1.chrUn_random 234899909 17 - 240967748 cagctgg----aaccaggatc s rn3.chr10 47604884 17 - 110733352 CAGTTGA----AATAAGGACT s canFam1.chr9 38088367 21 + 53642819 CAGCAGGGGTAAGCCAGGCTC a score=0.0 s hg17.chr17_random 206992 4 + 2618010 caCA a score=573.0 s hg17.chr17_random 206992 2 + 2618010 ca s panTro1.chrUn_random 234899926 2 - 240967748 ca s rn3.chr10 47604901 2 - 110733352 CA a score=191.0 s hg17.chr17_random 206992 2 + 2618010 ca s rn3.chr10 47604901 2 - 110733352 CA a score=145.0 s hg17.chr17_random 206994 2 + 2618010 CA s panTro1.chrUn_random 234899928 2 - 240967748 CA s mm5.chr11 46265660 2 - 121648857 CT a score=0.0 s hg17.chr17_random 206994 2 + 2618010 CA a score=6027.0 s hg17.chr17_random 206996 16 + 2618010 GCCCCCAGCCCAGAGT s panTro1.chrUn_random 234899930 16 - 240967748 GCCCCCAGCCCAGAGT s mm5.chr11 46265662 16 - 121648857 GCCCTAAGCCTAGAAC s canFam1.chr9 38088388 16 + 53642819 ACCTCTAGCCCAGAGC a score=1126.0 s hg17.chr17_random 206996 19 + 2618010 GCCCCCAGCCCAGAGTGCT s canFam1.chr9 38088388 19 + 53642819 ACCTCTAGCCCAGAGCTCT a score=445.0 s hg17.chr17_random 207012 3 + 2618010 GCT s panTro1.chrUn_random 234899946 3 - 240967748 GCT s canFam1.chr9 38088404 3 + 53642819 TCT a score=8990.0 s hg17.chr17_random 207015 73 + 2618010 GGACACCACGCTTCAGGGGAATTGGCGTGCTGAGCTCACACCAGAGAGGTCCTGCTAGCTGCCAGCCTGGGGC s panTro1.chrUn_random 234899949 73 - 240967748 GGACACCACGCTTCAGGGGAATTGGCGTGCTGAGCTCACACCAGAGAGGTCCTGCTAGCTGCCAGCCTGGGGC s rn3.chr10 47604903 12 - 110733352 GGAC-------------------------------------------------------------CCTGGGGC s canFam1.chr9 38088407 58 + 53642819 GGACAACACAGTTCAGGGGAAGGAGGGAGCCGGGCT---------------CTGTCAGCTGCCTGCCTGGGGC a score=2724.0 s hg17.chr17_random 207088 25 + 2618010 TCCCCCGCCTGCTGCCCACCCCTTC s panTro1.chrUn_random 234900022 25 - 240967748 TCCCCCGCCTGCTGCCCACCCCTTC s canFam1.chr9 38088465 10 + 53642819 ---------------TCACCTCTCC a score=0.0 s hg17.chr17_random 207113 41 + 2618010 AACACCGATAGAGGGACTCACAGGCACGACGGTGGGACCTT a score=3565.0 s hg17.chr17_random 207113 37 + 2618010 AACACCGATAGAGGGACTCACAGGCACGACGGTGGGA s panTro1.chrUn_random 234900047 37 - 240967748 AACACCGATAGAGGGACTCACAGGCACGACGGTGGGA a score=902.0 s hg17.chr17_random 207150 4 + 2618010 CCTT s panTro1.chrUn_random 234900084 4 - 240967748 CCTT s mm5.chr11 46265678 4 - 121648857 CCTC a score=10881.0 s hg17.chr17_random 207154 43 + 2618010 CCACTGCAGACACAAAGCACACCACCACCTGAGGTCCAGGGTT s panTro1.chrUn_random 234900088 43 - 240967748 CCACTGCAGACACAAAGCACACCACCACCTGAGGTCCAGGGTT s mm5.chr11 46265682 34 - 121648857 CTACAGCTGAAATAAGA---------ACTCGGGGTCCCAGAAC s canFam1.chr9 38088475 43 + 53642819 CTGCTGCAGACACAAAGCACATCACCATCTGAGGTCTGGGGTG a score=11388.0 s hg17.chr17_random 207197 24 + 2618010 ATGATTTGAATCCTACCAAGTGCC s panTro1.chrUn_random 234900131 24 - 240967748 ATGATTTGAATCCTACCAAGTGCC s mm5.chr11 46265716 21 - 121648857 ATGATTCCAATCC-AC--AGTGCT s rn3.chr10 47604915 21 - 110733352 ATGATTCCAATCCAA---AGTGCT s canFam1.chr9 38088518 24 + 53642819 ATGATTCGAATTCCACCAAGTGCC a score=83879.0 s hg17.chr17_random 207221 307 + 2618010 CATCAGGCCTTTCCCAGGTTGCGGGGAAAACAGGACCCCAGCCCCCACACAGTCCCTGGCCAC-CTGCTGCTCCT-GGAGAC-TTGTCTCCCTGCCTTTAGGAAGGGTTTTt--gtgtgaaggtttttgcatgcactggtctgaacgcatgttcacagccctgcaaggtgggtttgattctcatccccatcttgcaggtgaaacaggt---tcccagagtc-tgagtagtttgccaaggccacacagccaggaaggggtgaaccaggactcaaacccaggtcctctgactgccgctttctctctcTGGGGGTCGGT s panTro1.chr19_random 2213780 307 + 57627672 CATCAGGCCTTTCCCAGGTTGCAGGGAAAACAGGACCCCAGCCCCTACACAGTCCCTGGCTAC-CTGCTGCTCAT-GGAGAC-TTGTCTCCCCATCTTTAGGAAGGGTTTTT--ATGTGAAGGTTTTTGCATGCACTGGTCTGAACGCATGTTCacagccctgcaaggtgggtttgattctcatccccatcttgcaggtgaaacaggt---tcccagagtc-tgagtagtttgccaaggccacacagccaggaaggggtgaaccaggactcaaacccaggtcctctgactgccactttctctctctgGGGGTCGGT s mm5.chr11 46265737 285 - 121648857 CACCA-GCCTTCCCTAGTTGGCAGGGAAAATAGGTCTCTAGCTCTC-CACAGCACCAAGCCAC-CTGTTGCTTGTAAGAGAC-TGGGTTTCCC-TCTTTAAAAGGTGTCGCC---TGTTACTGAATTGGCAAACGCC-TTCTTATTGAATCTTCACCATCCTGTGTGGTGGGAGGCATGGTCA-ACCCATTTTATAAATGAGATGGCT-----CCAGAGTTGTTGATAAACTTCCAGGGCCACCACGGTGTGAAGGGCTGAAGCAAA----AACTCCAAGCCTTTTGACTA------------TCTGAGGACAAGG s rn3.chr10 47604936 265 - 110733352 CACCA-ACCTTCCCTAGTTGGCAAGGAAAATAGGTCTCTAGCCCTT-CATGACGCCAAGCCAC-CTGTTGCTTGT-AGAGGC-TGGGTTTCCC-TCTTGAAAAGGTGTTGCC-TTTGTTACTGAATTGGCAGGCACC-TTCTTATTGAATCTTTACC--------AGGTG-------TGACCA-ACCCATTTTATAAATAAAATGGCC-----TCAGAGTAGTTGATAAACTTCCAGGGCCGCCAAGGTGGGAGGGGCTGAAGCAA-----AACTCCAAG-CCTTTGACTG----------------AGGATGAGG s canFam1.chr9 38088542 297 + 53642819 CATCAGCCCTTTCCCAGTTTGCAGGGACGACAGGACTCCAGCCCCCACATGGCACCTGGCAACATTGCTGGTCAC-AGAGCCTTGGGTTTCCTGTCTTCAAGGCGGCTTTGTGtatgttaagagttttacacgcact-ctcttaatgaattttcacaattctg--aggtgggtgtg----tcatcctcatttgacagatgaagaaactgattcagagaggc-tgagtaatttgtcagtgtcacagagctgggaaagggcaaactaggtctcagg-ccaggtcccgtgactgccacatcc----tctgGAGA----- a score=34194.0 s hg17.chr17_random 207528 259 + 2618010 ACCCCC-AGTCCCTTCCCT---------CTTGGTCTGTCGGAGACTCAGCAGAGACACCAGGTGAAGGCTCAGTAAGCTCAGGTGCATGATGGAGACCTGGGGTCTTGTCACTGTCCTGCCACCTCATCC----GCTGGCTTTGAAACCATCCGTGCTACTTCAGGCT-TCCC--CAGAGGTGTCTAACCTGGCCCCAAAACTCAGCCACCCCA-CCCTAGCC-----TCTGGGGGCTGAGGCAA----GGGCTCCTCTTTTCTCCACACAG----AAT-GGGCACCCTCT s panTro1.chr19_random 2214087 259 + 57627672 ACCCCC-AGTCCCTTCCCT---------CCTGGTCTGTCGGAGACTCAGCAGAGACACCAGGTGAAGGCTCAGTAAGCTCAGGTGCATGATGGAGACCTGGGGTCTTGTCACTGTCCTGCCACCTCATCC----GCTGGCTTTGAAACCATCCATGCTACTTCAGGCT-TCCC--CAGAGGTGTCTAACCTGGCCCCCAAACTCAGCCACCCCA-CCCTAGCC-----TCTGGGGGCTGAGGCAA----GGGCTCCTCTTTTCTCCACACAG----AAT-GGGCACCCTCT s mm5.chr11 46266022 219 - 121648857 ACTCTC-AGGTCCCTCTCT---------CCGGAGTTAATGG-------------------------GGCTTAGTGAGGTCTCTTACA-----GAGA-----AGTCTTGTTATTGTCA-GCCACCTCACCCTCTAGCTGGCTTTGAAATCATTTGTGCCA-TTTAGGAT-TTGC--CAAAGGC-TACAGCCAAGCCCTGGAACTCAGCTGTCCCACCCCCAGCCTGAGGTCAAGGAACTTGGGGGA--CCGGCCTGATGTTTTCCCCATACAG------------------- s rn3.chr10 47605201 214 - 110733352 CCTCCC-AGGTCCTTC--------------TGAGTCATTGG-------------------------AGCTTGGTGAGGTCTGTTACA-----GAGA-----AGTCTTGTTATTGTCC-GCCACCTCATCCTCTAGCTGGCTTTGAAGTCATCTGTGCCA-TTTAGGAT-TTGC--CAAAAGGCCACAGCCAAGCCCTGGAACTCAGCTGTCCCACCTCCAGCCTGAAGTCAAGGGGCCTAGGGGA--CAGGCCTGATGTTTTC-CCATACAG------------------- s canFam1.chr9 38088839 254 + 53642819 ACTCCCGAGTGCTCTCCCT---------CCTGAGCTGAGGACTGCTCAGCAGATA-----------GACTCAG-AAGACGCAGTGCATGAGGAAGGGGTGAGACCCCATTG-TGTCCTGCTGCCTCATCCCCTAGATGGCTTTGAAATCACTGGTCCGG-TTAGAGCTACCCC--CAGAGGTCCCCAGGGTCCGCTGGGAGCTCAGCAATCCCT-CCCTAGCTCGGAGTCTGTAGGCCA----------GGGCT-CTCTCTTCTCCACAAGGCTGGAATAGGGGAACCGCT s galGal2.chrUn 51280957 254 + 165033910 ACCCAC-AGCACATCCCCCCACCACTGGCTGGGGCTACCAGCAGCTCAGCAGCCCCACGAGCCTCCAGTTCAGCAGGTCCTGCTTCCTGATGGTCA-----GTGCTTCCTCCTG----GAGCTTTCCTTCAAGATAAAACGTGGCACCATCCCCTTCCAGCACATCCT-TCACATCACACACACCCACTCGAGCCTCGCAGCTCAGCA--------------------GCTGGACAATAAAGCAACGCAGGACTCATCCTTCC-CAAAACTG----AAT-CACTCTCCTCT a score=79063.0 s hg17.chr17_random 207787 482 + 2618010 GGGGGCCTAAGGTAAGAGGTGGTCTATTTCTAAAAGGCCTGGTGTCTAGTTAAGCTCTGGGTATCTTCTTAGCTTTGCTTTTTTGGGGGTCTCATTCAGAGAGGAGATTTGACA-GCCTCTCTGAAGACACAGAAG---Tgaatggcaaagcgagaagaggctgtacncccccacctaccatgacttccttattaggca-catggggaatgtgaggcccagtgggtgaaaggggcctgaaggggcacagctgggacaagaacccagaactccagccccccagtccagggccctctactgc-ccagGCTGTGCAAATGGGGCTGGGACC--GAAAGATG----------------GGGACAGT--CAGGCTGGGAGGCGGGCTTACTGGCCAGCCAGCCCAGGGGCAGCACAG--GCACTCGGGCAGGAACTCCCCAGGAAGTT-TGG-ATCCTTCCTTCCCTAGGATCTCAGCACCCTTTTAGATCCCGTGCAGATTGTCTTTCTGTTAAAG s panTro1.chr19_random 2214346 464 + 57627672 GGGGGCCTAAGGTAAGAGGTGGTCTATTTCTAAAAGGCCTGGTGTCTAGTTAAGCTCTGGGTATCTTCTTAGCTTTGCTTTTTTGGGGGTCTCATTCAGAGAGGAGATTTGACA-GCCTCTCTGAAGACACAGAAG---TGAATGGCAAAGCGAGAAGAGGCTGTA-TCCCCCACCTACCATGACTTCCTTATTAGGCA-CATGGGGAAT------------------AAGGGGCCTGAaggggcacagctgggacaagaacccagaactccaggcccccagtccagggctctctactgc-ccagGCTGTGCAAATGGGGCTGGGACC--GAAAGATG----------------GGGACAGT--CAGGCTGGGAGGCAGGCTTACTGGCCAGCCAGCCCAGGGGCAGCACGG--GCACTCGGGCAGGAACTCCCCAGGAAGTT-TGGAAACCTTCCTTTCCTAGGATCTCAGCACCCTTCTAGATCCCGTGCAGATTGTCTTTCTGTTAAAG s mm5.chr11 46266241 388 - 121648857 ------CTAGAAACAGGAGCAG---ATATTTAAG------TGCACCTGGTTGAGCTCTGAGTAACTCA--GATTTTGCCTTTTGGGGTGCTTTGTTCAGAGAGGAGTTTAGAAA---CCCCCCGACGATACAGAAA---TGTTTATTATACCTAAATG------------------------------TTTATTATACC-TGAGGTGACT--GAAGCTCATCA-----AAAGAAC---AGGTGGCTCAGGT-GGACAAGAAACCTGGA----------------------TCCCTGTTGCACCAGGCAGT--AAGTGGGTTTGGGACT--CAATGATGATCCTTGCCAATCCCAGGGACAGG--CAGGGTGGGAAGCAGGGCTTCTAGCCACCTA----AAAAGTG--ATGG--CCACT----------------AAAAAGTGATGG-AACTTTCCC------GGATCCTGGAACGTTTCTAAATCCCCAGTACATTACATCTCTACTAAAG s rn3.chr10 47605415 365 - 110733352 ------TTAGAAACCGGAGCGG----TATTTTAG------TGCACCTGACTGAGCTCTGGGTAACTGA--GATTTTGCCTTTTGGGGTGCTTTGTTCAGAGAGGAGCCTGGAGA---CCTCCTGAGGATACAGAAC---CG-----------------------------------------------TTTATTA-----------GACT--GAGGCTCAGCA-----AAAGAAC-----AGGGCTCAGGT-GGGCAAGAAACCTGGG--------------------TCCCTCTGTTGCTGCAGGCAGT--AAGTGGGCTTAGGCCT--CAATGATGATCCTTGCCAATCCCAGGGACAGG--CGGGGTGGAAAGCAGGGCTTCTAGCCACCTC----ACGTGTAAGATGAACCCACT----------------AAAAAGTGATGG-AACTCTCCT-----GGGATCCTGGGACGTTTCTAAATTCCCAGTATATTACATGTCTGCTGAAG s canFam1.chr9 38089093 446 + 53642819 GGGGGCCTAAGGAAAGGGATGGCCTGTTTTTGAGGGACCTCCCGGCTGGGTGAGCCCTAAGTATCTTC-TAGCTTTGCTTCTTGAAGGGCCTTGTTTGGAGAGGAGTCTCACCGCTTCTCCTTGAGGATACTGAAAGGCCgaagggcaaggctggaaggggccttgactctcaaccgaatacaaattccttactagacaccagggaaact--gaggcccagCC-----GGCGA-------------------GGGTAAGGAACCA-----------------TTTAGGGCTAACTG--AC-CAAGGCTGTGCAAAGAGTACACGGGCCCTGAAAGATGGTCCCAGCTG------ACCACAGGGACAGGATGGAAGCTAGGTCTTCGGGACGGCCGGCCCACGCGGCGGATGGG-GCGCGCAGGGAGGAGGCCCCCGGGGAATG-AGC-GAGTAGTCTTCACCAGGACCGCCGGGC----------CCCTTGCAGATTGCATTTCAGCGAAAG a score=-2333.0 s hg17.chr17_random 208269 8 + 2618010 ------CGTTTTGA s panTro1.chr19_random 2214810 8 + 57627672 ------CGTTTTGA s mm5.chr11 46266629 9 - 121648857 GGAAAAGGT----- s rn3.chr10 47605780 8 - 110733352 GAAAAAGA------ a score=-50.0 s hg17.chr17_random 208277 1 + 2618010 -----g s panTro1.chr19_random 2214818 6 + 57627672 ggctgg a score=25658.0 s hg17.chr17_random 208278 298 + 2618010 gcacgatggctcacgcctgtaattgcagcactttgggaggccgaggctggcggatcacctgaggtcaggagttcgaaacccgcctggccaacagggcgaaaccccatctctactaaaaatacaaaaattagccgggtgtggtggcgcacgcctgtagtcccagctactcagggaggctgaggcacgagaatcgcttgaacccgggaggtgaaggctgcagtgagccaagatcgcggcactgcactccagcctgggcgacagagcaagactccgtctcagaaaaaaaacaaacaaacaa s panTro1.chr19_random 2214824 295 + 57627672 gcacgatggctcacgcctgtaatcccagcactttgggaggccgaggctggcggatcacctgaggtcgggagttcgaaacccgcctggccaacacgacgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgcacgcctgtagtcccagctactcggggaggctgaggcacgagaatcgcttgaacctgggaggtgaaggctgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagcaagactccgtcttagaaaagaa--aaacaaa-aa a score=125368.0 s hg17.chr17_random 208576 345 + 2618010 CGCTTTGAGAAGCTGCAGAAGCGGCT-CTGCCTTTGACCCCGAATGGGCATCTTTACTCGGGTCCATCATCCCCAC--AAAGACAGGAAATCTGATGCC---------------------AAAAAAAAAAAGTCATTCCAGG----TGTCAGTAACCAGGCGCTGCCTNCCAGcgccgcc--ccgcccgccgccccgcccgccgccccgcccgccgcc----tgcGCNAATCCCCG-ACGGGCCCGTCTTCCAGCCCCGAAGCGGTCACCTCCTGACCTCTAGTGGCGAGCGCGGGGAACTgcgcc---------------ccggcccgtccgcccgccgagcccgggccgTGCATGCCGAGCCCGTTGTTCCTTCGCAAACCGAGTNNGAACCT s panTro1.chr19_random 2215119 343 + 57627672 CGCTTTGAGAAGCTGCAGCAGCGGCTCCTGCCTTTGACCCCGAATGGGCATCTTTACTCGGGTCCATCATCCCCAC--AAAGACAGGAAATCTGATGCCaaaaaaaaaaaa---------aaaaaaaaaaaGTCATTCCAGG----TGTCAGTAACCAGGCGCTGCCT-CCAg--------------ccccgccccgcccgccgccccgcccgccgcc----TGCGCCAATCCCCG-ACGGGCCCGTCTTCCAGCCCCGAAGCGGTCACCTCCTGACCTCTAGTGGCGAGCGCGGGGAACTGCGCC---------------CCGGCCCGTCCGCCCGCCGAGCCCGGGACGTGCATGCGGTGCCCGTTGTTCCTTCGCAAACCGAGT--GAACCT s mm5.chr11 46266638 361 - 121648857 -CCTTTGAGAAGTTTCAGAATCAGTT-CAGTCTTTCATTCCAAACGAGTATCTTCCTTCTGGCTCATCAGCGTTGC--AAAG--AGGAAATTTGATACC----------------------AAAAACAAAGGTCATTCCAAAGTACTGTCAGTAACCAGGGCCTCTCT-TGATGCCCATCATCCACCTCGCGTCCTGGTCTCTGCCCCGCCCTCCACCACCGTTAGCCAATCCCTGAACAGTCCCGTCTTCCAACCCAGAGTCAGTGACCTCCTGACCTCTAGTGGCAAAAATGAGGAACTGCACCTCCGTGGCCCGCCCGCCCGCCCGCCCGCCCGCCGAGCTCGGGCCAAGCGTCCTG---CCCTCCGTCCTTCTCCAGCCAAGT--GAATCT s rn3.chr10 47605788 337 - 110733352 CCCTTTGAGAAGTTGCA------GTT-CAGCCTTTCATCCCAAACGAGTATCTTCCTACTGGCCCATCGGAGTGGC--AAAG--AGGAAATCTGATACC----------------------AAAAACAAAGGTTATTCCAAA---------GTAACTAGGGCATCTCT-TGATGCCCATCATCCACCTCGCGTCCTGGTCTCCGCCCCGCCCACCGCCACCGTTAGCCAATCCCTGAACGGGCTGGTCTTCCAACCCTGAGGCGGTGACCCTCTGACCTCTAGTGGCAAAAACGAGGAGCTGCACCTCC------------ATGGCCCGCCTACCCGCCGACCTCCGGCCAAGCATGTCCAG-CCCTTCGTCCTTATCCAGCCAAGT--GAACCT s canFam1.chr9 38089542 325 + 53642819 AAGTTCTGGAAGCTGCAGTATCAGCT-CTGCCTTTGACCCCAAACTGGCATCTTCCCTCCGGTCTGTCAGCCCCACGAAAAGACGGGAAAGCTGACGCC------------CCTCCCCCCACCTCCAAAAAGTAACTCCGAAGTCTGGCCTCTGACAGGAAGTCGCCG-GACGGCGCGCG--GCACCCTCCGCCCCG---------CCTCCCGCCGCC---GCTAGCCAATCCCAG-ACGGGCCCACCTCCCAGCCCTGAGGCGGCCACCTCCTGACCCCTAGTGGCAGGAGCGAGAAACTGCACCTC-------------CCGGCCCGT----------------------GCATGTC----CTACCGTTTCTTCTCAAACCGAGA--GAACCT a score=160434.0 s hg17.chr17_random 208921 202 + 2618010 CCCGATGCATGGACTCTGGCTGTCGTCGACGCAGACTCTCGTGCACTGCTTAACCCC---GTTTTGCTGCCATGTGACGGCT------------GCAG-ACACTGTCCTCAAACTGCAGTCCCAC-AGACAAGTTTTGTATTTTGG-----TCTGACCTACCCGAAGGTGTCCTTTTTAAGTCTTATTTGTTAATATTTATAATGACATATAATCCAAAGTAAA s panTro1.chr19_random 2215462 214 + 57627672 CCCGATGCATGGACTCTGGCTGTCGTCGACACAGACTCTCGTGCACTGCTTAACCCC---GTTTTGCTGCCATGTGACGGCTGCAGACACTGTCGCAG-ACACTGTCCTCAAACTGCAGTCCCAC-AGACAAGTTTTGTATTTTGG-----TCTGACCTACCCGAAGGTGTCCTTTTTAAGTCTTATTTGTTAATATTTATAATGACATATAATCCAAAGTAAA s mm5.chr11 46266999 197 - 121648857 CCCGATGCATGGACTCTGGCTGTCCTCGACACGGA--CTCGTGCACTGCTTA---CA---GTTTTGCTGCCACGTGACGACT------------GCAG-AATACATCCTCAAACTGCAGCGCCACGAAACAATTTTTGTAATCTTG-----TCTGACCTTCCCAAAGGTGTCCTTTTTAAGTCTTATTTGTTAATATTTATAACGATATATAAT-CAAAGTAAA s rn3.chr10 47606125 198 - 110733352 CCCATTGCATGGACTCTGGCTGTCGTCGACACGGA--CTCGTGCACTGCTTA---CA---GTTTTGCTGCCACGTGACGGCT------------GCAA-AATACATCCTCAAACTGCAGCGCCACGACACAATTTTTGTAATCCTG-----TCTGACCTTCTCAAAGGTGTCCTTTTTAAGTCTTATTTGTTAATATTTATAAGGATATATAATTCAAAGTAAA s canFam1.chr9 38089867 201 + 53642819 CCCGATGCATGGACTCTGGCTGTCGTCGACGCAGA--CTCGTGCACTGCTTACCACC---GTTTTGCTACCATGTGGCGGCT------------GCAGAAAAATGTCCTTAAACTGCAGCCCCAC-ACACAATTTTTGTACTTATG-----TCTGACCTACTCGAGGGTGTCCTTTTTAAGTCTTATTTGCTAATATTTATAATGACCTGTAATTCAAAATAAA s galGal2.chr19 6617896 195 + 9463882 CCAGCTGCATGCAGAGCGGTGGTCGTCGCGCCCGC--CTTGTGACATGTTTGATACCGATGTTTTGCTACCATGTGAAGGCT------------GCAG-AAATCGTCCTT-ACCTGCATCCT----AAGGGAATTTTGTATTTCAGCATTCTCTCTCTCTCTC---TGTGTACTTTTT--GTCAGATTTGTTAATATTTATAACGA----GAACCCAAAATAAA a score=18848.0 s hg17.chr17_random 209123 40 + 2618010 TGGAAACGTCATATTGCGATCTCATTGCCTTGGCGAGACT s panTro1.chr19_random 2215676 40 + 57627672 TGGAAACGTCATATTGCGATCTCATTGCCTTGGCGAGACT s mm5.chr11 46267196 39 - 121648857 TGAGAACGTCGTACTGAGGTCGCACTAGCTTGG-GAAACT s rn3.chr10 47606323 39 - 110733352 TGGGAATGTCGTATTGAAGTCGCACTAGCTTGG-GAGACT s canFam1.chr9 38090068 38 + 53642819 TGAAAACGTT-CACTGCAATGGCATTTGTTTGG-GAGACT a score=0.0 s hg17.chr17_random 209163 4 + 2618010 CTCA a score=600.0 s hg17.chr17_random 209163 1 + 2618010 C s panTro1.chr19_random 2215716 1 + 57627672 C s mm5.chr11 46267235 1 - 121648857 C s rn3.chr10 47606362 1 - 110733352 C a score=282.0 s hg17.chr17_random 209164 3 + 2618010 TCA s panTro1.chr19_random 2215717 3 + 57627672 TCA a score=3087.0 s hg17.chr17_random 209167 23 + 2618010 CCTTTTAATAGATT--TGAA-GGGGT s panTro1.chr19_random 2215720 24 + 57627672 CCTTTTAATAGATT--TGAAGGGGGT s canFam1.chr9 38090106 25 + 53642819 GCTTTAAACAGATTGATGAA-AGGGC a score=27208.0 s hg17.chr17_random 209190 313 + 2618010 gggggcggtggctcacgcctgtaagtcctagcacttttggaggtcgaggtgggagaattgcttgaggcctggagttcgagaccagcctggtcaacatggagaaaccacgcctctacacacacagagacacacacaatgacaattagcctagcgtggtggcacacacctgtagccccagcttttcaggaggctgaggtaggaggaggaggatcgcttgagcctggaaagtggggattgcagtgagccgagatcacgccaccgcactccagcctgggcaacagagggagaccttgtcaaaaaaaaaaaaaaaaGA s panTro1.chr19_random 2215744 303 + 57627672 gggggcggtggctcacgcctgtaagtcctagcacttttggaggtcgaggtgggagaattgcttgaggcctggagttcgagaccagcctggtcaacatggataaaccacgcctct----------aaacacacacaatgacaattagcctagcgtggtggcacacacctgtagccccaggtattcaggaggctgaggtaggaggaggaggatcgcttgagcctggaaagtggggattgcagtgagctgagatcacgccactgcactccagcctgggcaacagagggagaccctgtcaaaaaaaaaaaaaaaaGA a score=3571.0 s hg17.chr17_random 209503 23 + 2618010 TTTGGAAGGGTAGGAGGGGAGGG s panTro1.chr19_random 2216047 23 + 57627672 TTTGGAAGGGTAGGAGGGGAGGG s mm5.chr11 46267236 23 - 121648857 CTTGGAAGATCTGGGGGGAACAA a score=1423.0 s hg17.chr17_random 209526 50 + 2618010 TGGAAAGACG---GAGG-----------------------------AAAAGGCAACTGAAACCTACTCCGG-AT----------ATAGTCTTG s panTro1.chr19_random 2216070 50 + 57627672 TGGAAAGACG---GAGG-----------------------------AAAAGGCAACTGAAACCTACTCCGG-AT----------ATAGTCTTG s mm5.chr11 46267259 93 - 121648857 GCGAAAGACAACTGGGGCTTATATGTGGCGTTTACTTTTGTTTTTTGAAATGCATTTGTAAACCAGTCTAGCATCCAACTTGTGATGATCCTC s canFam1.chr9 38090131 48 + 53642819 CGGAAAGAGC---GAGA-----------------------------GAATGGCAAC--AGGCTCACGCAGC-Ac----------gttgtctcc a score=24843.0 s hg17.chr17_random 209576 55 + 2618010 --ttactcttcaccagggac---ccatttgaggtaggccctcaagttacagatggggaaa s panTro1.chr19_random 2216120 55 + 57627672 --ttactcttcaccaggaac---ccatttgaggtaggccctcaagttacagatggggaaa s mm5.chr11 46267352 58 - 121648857 --CTGCCTCTCATTTACAACTCTCCATTTGAAACAGGCTCCTAGGTTACTTATGGAAAAA s rn3.chr10 47606478 54 - 110733352 --TTACTCCTCACCAAGAG----CTATTTGAAACAGGCTCCCAGGTTACATATAGAGAAA s canFam1.chr9 38090179 56 + 53642819 tttaactcttcaccaagaac---tcatgagaggtagg-tctggagttacagatggaaaaa a score=4494.0 s hg17.chr17_random 209631 24 + 2618010 ctaaggcccagagaggttaaaata s panTro1.chr19_random 2216175 24 + 57627672 ctaaggcccagagaggttaaaata s mm5.chr11 46267410 20 - 121648857 C--AGGCTC--AGAAGTTTGAATA s canFam1.chr9 38090235 22 + 53642819 -ctaaactcagagaagtt-aaata a score=0.0 s hg17.chr17_random 209655 1 + 2618010 c a score=100.0 s hg17.chr17_random 209655 1 + 2618010 c s panTro1.chr19_random 2216199 1 + 57627672 c a score=21758.0 s hg17.chr17_random 209656 132 + 2618010 ttttacagaatcacacggctggtcgatggcagaagcaggattcaaactgagg-------cagccCAAGACATTTTGCACCAGGACCTGTCGACCATGCTGTTGTCCACTCATCCAACAAACAGCCGTGGAGTATTGACT s panTro1.chr19_random 2216200 132 + 57627672 ttttacagaatcacacggctggtcgatggcagaagcaggattcaaactgagg-------cagccgaagactttttgcaccaggaccTCTCGGCCATGCTGTTGTCCACTCATCCAACAAACAGCTGTGGAGTATTGACT s canFam1.chr9 38090257 135 + 53642819 tttggctgaaccacacagctggtaagtgacacgaccaggattc-aactaatgccccctcccccccaagac--tttatatcaggatcactatgccatgctgtCATCTACT-GCTCAGCAAACAGCTGTGGAGTATTAACT a score=40815.0 s hg17.chr17_random 209788 575 + 2618010 AACGCCAGCCCGTCTGAGGCTCCAAGAGTCTTACGTTTTGGAAGGTAATTTAAGACATGTACTGCTTAGGTTTGGAGGGAAAAAAATAAACCTTCCTAACCACAGATTAGTGTATTAGGACTAGTAGCAATCCCCACACTTTATATTTTCATTCCACCTTGTTAGAAAATGTTGATCAATTGTTGAATACAGTTTATTGTACATCATTCTTTAGGTCAGAAATTTCTCGAGATAAAAGCCTTTGCTTTCTAACATCGACTAACGAAGAAAATGTATGTCATTGAATATGCAAACCTCTCAATCTCTTTCCTCTATGTCCCCCTTCagggtcagggtcagggtttagggtcggggttagggtctaggatcaggattaggggttaggggttagggttcaggcttgggttcgtactaggtccaggtccaggtccgggtcagcgtttcgcatttagtcagggttgggtgttcggttttggccgggttagggtgggttaggactcgggtCATAGTTTTGGGTTGGTGC-GGTCGGCATCCATGCTGGAATTTCCTTTC-CGGCTGTCACCGTGACCGTAACC s panTro1.chr19_random 2216332 496 + 57627672 ATCGCCAGCCCGTCTGAAGCTCCAAGAGTCGTACATTTTAGAAGGTAATTTAAGACATGTACTGCTTAGGTTTGGAGGGAAAAAAATAAACCTTCCTAACCACAGATTAGTGTATTAGGACTAGTAGCAATCCCCACACTTTATACTTTCATTCCACCTTGTTAGAAAATGTTGATCAATGGTTGAATACAGTTTATTGTACATCATTCTTTAGGTCAGAAATTTCTCGAGATAAAAGCCTTTGCTTTCTAACATCGACTAACGAAGAAAATGTTTGTCACTGAATGTGCAAACCTCTCAATCTCTTTCCTCTATGTCCCCCTTCAAggtcagggtcag---------------------------------------------------------------------------------ggtccaggtccgggtcagcgtttcgcatttagtcagggtttggtgttcggttttggccgggttagggtgggttaggactcgggtcatagttttgggttggtgcgggttGGCATCCGTGCTGGAATTTCCTTTCAGGGCTGTCACCGTGACCGTAACC a score=39917.0 s hg17.chr17_random 210363 477 + 2618010 TGAATTCTGGTTCCACTGCTCT--CCCCTG-------TCTAGTTATC-AGGGCTCTTTTC----ACCGCTGGCTCCATTCATTGCTCGCTCCTCCTGCTTATCT-CTCCTG--TCCAATCTGCAGAGCTCGCCACCTTCTTGTTCCGCCCTCTTTTCCCTAACATCCAATAGCAGCCTTCTCCGCAGTCCTTGCTCCTACCACTCCTGTCTCTTGCCCAATC-AGCAGGCTTTACCAATGCTTACTCCGCCCACTTCTCTCTC------TTGTCCAATTGGCAGGGTCTCCTCAGTGCTCGCCCCACCTACTTCATGCCCG-TCCAATTGCAGGATCTCAGTGCTAGCCCCGCCCGCTTCTCGCTCCTATCCAACCAGTAGAGACTCTACCAGTGCCCACCCTGCCCACTTCTCTTTCTTATCCAATGACAGGATCTCCTAGTGCTCACTCCGCCCACTTCTCTCCCCCAT-CCAATCAGCGAGCTCTGCCAGTG--CGTTGCGT s panTro1.chr19_random 2216828 464 + 57627672 CGAATTCTGGTTCCACTGC------------------TCAAG--ATC-AGGGCTCTTTTC----ACCGCTGGCTCCATTCATTGCTTGCTCCTCCTGCTTATCT-CTCCTG--TCCAATCTGCAGAGCTCGCCACCTTCTTGTTCCGCCCTCTTCTCCCTAACATCCAATAGCAGCCTTCTCCGCAGTCCTTGCTCCGACCACTCCTGTCTCTTGCCCAATC-AGCAGGCTCTACCAATGCTTACTCCGCCCACTTCTCTC----------GTCCAATTGGCAGGGTCTCCTCAGTGCTCGCCCCACCTACTTCATGCCCG-TCCAATTGCAGGATCTCAGTGCTAGCCCCGCCCGCTTCTCGCTCCTATCCAACCAGTAGAGACTCTACCAGTGCCCACCCTGCCCACTTCTCTTTCTTATCCAATGACAGGATCTCCTAGTGCTCACTCCGCCCACTTCTCTCCCCCAT-CCAATCAGCGAGCTCTGCCAGTGCTCGCTGCGT s galGal2.chrUn 6439377 461 - 165033910 TGACCTCTGACCCCACTCCGGTGACCCCTGACCCCATTCTGGTGATCTCTGACCCCATTCATTGACCTCTGACCCCATTCATTGACCCCTCACCCCATTCATTGACCCCTGACCCCATTCTGTTGACCTCTGACCCCACTCATT--GACCTCTGACCC----CATTC--TGGTGACCT------CTGACCCCGCTCCGGTGACCCCTGAC-----CCCATTCTGGTGATCTCTGAC----CCCATTCCGTTGACCTCTCACCCCATTCATTGACCCCTGACCCTATTCTGGTGACCTCTGACCCCGCTCTGGTGACCCCTGACCCCATTCCGGTGACCC----CTGACCCCACTCCGTTGAC-CTCTGACCCCACCCATTGACCCCTGAC-----CCCACTCCGACCATCTC-CGACCGTTTCCAACGCCTCCCCCCCCTCCCCGTGACCCCGCGGACCGCGCCGGGCCGTACCGGGCCGCAA--------AGAG--CGCTGCGT a score=6810.0 s hg17.chr17_random 210840 74 + 2618010 TCCTGTCCTTGGGGGAGGGAGTCCGGGGTCTCTCGGGGAAACGGAAACGCAGGCTCAGATGTGCGGGTCCAgtt s panTro1.chr19_random 2217292 74 + 57627672 TCCTGTCCTTGGGGGAGGGAGCCCGGGGTCTCTCGGGGAAACGGAAACGCAGGCTGAGATGTGCGGGTCCAGTT a score=14613.0 s hg17.chr17_random 210987 60 + 2618010 AAAAGGAGCATGGAGAGAAAGGC---CTTCCTCTCTCCTCAT--------GGGCTTACAGAANTNTNGGGG s mm5.chr7 4514197 60 - 133051633 AAAAGGAACATGGGGAGAAAGGGAAGCTTTCTCTTTCTCCCC--------CAGTTTTGAGAACT---GGGG s rn3.chr1 66966580 54 - 268121971 AAAAGGAGCATGGAGAGAAAG------CTTCTCTTTCTCCCC--------CAGTTTTGAGAATT---GGGG s canFam1.chr18 30269855 67 - 66173745 AAAAGGGGCATGGAGAGGAAGGCTC-CTTCCTCTCTCTCCTCTTTCCAGGGGGCTTGGAGAATT---GGGG a score=18854.0 s hg17.chr17_random 211047 81 + 2618010 AGAGGTCCCCCACTCTA-AACTCTAGAATGTGGCTC---TGTGGGATGACAGGTTCTAGATTCT-GTCTATGTGACCAAGACAATG s mm5.chr7 4514257 82 - 133051633 AGGGGTCCCTGCCCCTG-AGCTCTAGAATGTGGCTT---TGTCCCACAAGAAGTTCTAGATCATAGTGTGTGTGATGGAGACAATG s rn3.chr1 66966634 80 - 268121971 AGGGGTCCCTGCCCCTG-AGCTCTAGAATGTGAC-----TGTCCCACAAGGAGTTCTAGATCATAGTGTGTGTGATGGCGACAATG s canFam1.chr18 30269922 81 - 66173745 AGGGGTCCTAGCCTCCA-AGCTCTAGAATGTGGCTC---TGT-GGGCAGCAGGTTCTAGATCACTATCTGTGTGCTGGAGACAATG s galGal2.chrUn 6449756 82 - 165033910 ATAGCCCCCCCACTCCATAACCCCACACTGTGACCCCCATGG-CCCCCATAACTCCTCCACCCC---ACAAACTCATAAACCCATA a score=2925.0 s hg17.chr17_random 211128 19 + 2618010 GCTTCTGCCTTTGATCCCC- s mm5.chr7 4514339 19 - 133051633 ACCTCTGGCCCAAGGCCTC- s rn3.chr1 66966714 18 - 268121971 GCTTCTA-CCCAAGGCCTC- s canFam1.chr18 30270003 18 - 66173745 GCCTCTG-CCCGGAACCCC- s galGal2.chrUn 6449838 16 - 165033910 GCTCC---CCTGATTCCCC- s danRer1.chrUn 256768239 19 + 367113659 GCTGCTG-CCAGAGTCGCCG a score=3219.0 s hg17.chr17_random 211147 7 + 2618010 TCACCAG s mm5.chr7 4514358 7 - 133051633 TCTTCAG s rn3.chr1 66966732 7 - 268121971 TCTTCAG s canFam1.chr18 30270021 7 - 66173745 TCCTCAC s galGal2.chrUn 6449854 7 - 165033910 CCACCCC s fr1.chrUn 39063142 7 + 349519338 TCACCAA s danRer1.chrUn 256768258 7 + 367113659 CCGCCTG a score=-5140.0 s hg17.chr17_random 211154 6 + 2618010 ATCTCA----------- s mm5.chr7 4514365 6 - 133051633 ACATTA----------- s rn3.chr1 66966739 6 - 268121971 ACCTTC----------- s galGal2.chrUn 6449864 3 - 165033910 ACC-------------- s fr1.chrUn 39063149 6 + 349519338 GGCTGG----------- s danRer1.chrUn 256768265 17 + 367113659 AGCTTCCCGAGTGGCCG a score=2881.0 s hg17.chr17_random 211160 2 + 2618010 CC s mm5.chr7 4514371 2 - 133051633 CC s rn3.chr1 66966745 2 - 268121971 CC s canFam1.chrUn 2917454 2 + 91062872 TC s galGal2.chrUn 6449867 2 - 165033910 CC s fr1.chrUn 39063155 2 + 349519338 TC s danRer1.chrUn 256768282 2 + 367113659 CC a score=758.0 s hg17.chr17_random 211162 3 + 2618010 ACC s mm5.chr5 111488368 3 + 149219885 ACC s rn3.chr1 66966773 3 - 268121971 ACT s canFam1.chrUn 2917456 3 + 91062872 ACC s galGal2.chrUn 6449870 2 - 165033910 AT- s fr1.chrUn 39063157 3 + 349519338 ACC s danRer1.chrUn 256768284 3 + 367113659 GCC a score=-79690.0 s hg17.chr17_random 211165 227 + 2618010 AGGTCCCCCCAACAGGACAC---------CCCTATAAGTCCCCCTGACCATGTTCCCCTCACCGTGTTCCCCTCACCAGGCTCCCCTC-------------ACCATGTCC-CCTCA------CCAGGT-----C-CCCTCACCAAG----------GCTCCCCACCCATGTTCCCCTCACCA-GGTCCC---CTCACC------AAGGT-CCCC---CCCATGTCCCCTC-----------ACCATG-TCCCCTCACC-AGGTCCCCTCA---CCAAGGCTCCCCACCCA---TGTTCCCC--------TCAC s panTro1.chr9 136404686 202 - 136640551 AGGTCCCCCCAACAGGACAC---------CCCTATAAGTCCCCCTCACCATGTTCCCCTCACCATGTTCCCCTCACCAG---------------------------GTCCTTCTCA------CCAGGT-----C-CCCTCACCAAG----------GCTCCCCACCCATGTTCCCCTCACCATGCTCCC---CTCA----------------------CCATGTCCCCCC------------CTATG-TCCCCTCACC-AGGTCCCCTCA---CCAAGGCTCCCCACCCA---TGTTCCCC--------TCAC s mm5.chr5 111488371 218 + 149219885 AGATCCCTTCA-------------------CCCCTAAG----CTACACCA-GATCCCTTCACC-TCTACACTACACCAG-ATCCCCTC-------------ATCCCTGCT-CTACA------CCAGAT-----C-TCCTCACCCCGTTCTACACTAGTTCCCCTCATCTCTACACTACACCA-GATCCT---CTCACC------CATGC-ACTA---CCCAGGTCCTCTC-----------ATCTCT-GCTCCACACC-AGATCCCCTCA---CCCCTGCTCTACACCA-----GATCCCC--------TCAC s rn3.chr1 66966776 191 - 268121971 AACCCTCCCCA---GGGCAC---------CCCCAT-------CCTCTCCCCGGACCTCTCCTT-TAAGGGCTACGCACG--------------------------TCTCC-AGTGA------CCACAT-------GCCTCTCCAGG----------AACTCCTAC-------CTCTTCAGGG-AGTCCCCAGCTCTCC------AGGGA-GCTC---CCGCTGTCTCCAG-----------GGAATG-CCTCTTCCAG-AGACCACCCCG-------GACTCCTCA---G---TGACCCCC--------TTAC s canFam1.chrUn 2917460 228 + 91062872 GGACCCCCTCA-CAGGGACC---------CCTCACAGGGACCCCTCACCCGGACCCCCTCACCCGGACCCCGTCACCCGGACCCCCTCACCG-----GG--ACCCCCTCA-CCTCA------CCTGGA-----C-CCCTCACAGGG----------ACCCCTCACAGGGACCCCCTCACCCG-GATCCC---CTCACC------GGGAC-CCCCTCACCTGGACCCCCTC-----------ACCTGGACCCCCTCACCTGGACCCCCTCA---CAGGGACCCCC------------TCACC--------TCAC s galGal2.chrUn 6449872 184 - 165033910 -GGCCCCCCTG------------------CCCCATAAA----CCCCTCTGTGACCCC---------------TCATAAA------------------------CCCCCCA-CCTCATAACCCCCAGATGCCCTC-CCCACCCCACA----------ACTCCCCACTCAATAACCCCAT-----AACCCC---ATT------------GT-GCCC---CACATAACCCCAT-----------A------GTCCCCCAAT--GTCCACCCCAACCCCATAACCTCCCACCCA----ATAACCC--------TCAC s fr1.chrUn 39063160 181 + 349519338 AAGGCTGTTCA-------------------------------CCAAGGCTGGTC-----------------------------------------------ACCAAGGCT-GGTCA------CCAAGG-----C-TCTTCACCAAG----------GCTCTTCACCAAGG--CTGGTCACCA-AGGCTG---GTCACC------AAGGCTGGTC---ACCAAGGCTCTTC-----------ACCAAG-GCTGTTCACC-AAGGCTGGTCA---CCAAGGCTGGTCACCAAGGCTGTTCACCAAGGCTGGTCAC s danRer1.chrUn 256768287 266 + 367113659 TGAGCTTCCCGAACGGGCACAGCTCTTTGCCCTGCCAG----TCCCAGCCCAGCTCCTCAACTTGCCGGTCCCAGCCCGGCTCCTCACCCTGCCGGCGGCCATCCAGACA-GCTTA------CCCGGC-----CGGCGTCATCCAG----------ACTCCTCGCCTTGCCGATCACAGCCC-GG-CTC---CTCACCCTGCTGGCGGC-CATC---CAGACAGCTTTCCCGGCCGGCGTCATCCAG-ACTCCTCGCCTTGCCGTTCACA---GCCCGGCTCCACACCCTGCTGGCGCCAC--------TCAG a score=-9406.0 s hg17.chr17_random 211392 34 + 2618010 CAT-----------GCTCCCCTCACCAAGG-TCCCCCCCAGGTCCT s panTro1.chr9 136404888 22 - 136640551 CAG-----------GTTCCCCTCA-------------CCAGGTCCT s mm5.chr5 111488589 46 + 149219885 CCTGAGCTACACCAGATCCCCTCACCCCTGCTCTACACCAAATCCC s rn3.chr11 2855600 34 + 87800381 -----------AGAGCTCCCCCC-CCAGAGCTCCCCCCCAGAGCTC s canFam1.chrUn 2917688 35 + 91062872 -----------CCGGACCCCCTCACAGGGACCCCTCACAGGGACCC s galGal2.chrUn 6450056 33 - 165033910 -------------TATGCCCCCCACAACACCCCCaccccataaccc s fr1.chrUn 39063341 33 + 349519338 ------------CAAGGCTGGTCACCAAGGCTCTTCACCAAGGCT- s danRer1.chrUn 256768553 32 + 367113659 -----------ACGGCTCGCCCTGCCGG---CTCCCGACAAGCCTC a score=-60803.0 s hg17.chr17_random 211426 176 + 2618010 ---CCTCACCAGGTCCCCTCAC------------CAAGG--TCC--CC-----------------CCCATGTCCCCT---CACCAGG--TCCCCTCACCAAGGTCCC---CCCCATGTC-CCCT-------------CACCAGGTCC-CCTCACC-AAGGT---------------CCCCCCCATGTCCCCTCACC----AAGGCCCCCCT-------ATGNNNNCTCACCAN-GTNCCCTCACCAAGGA-CCCC--CC----TATG-TCC s panTro1.chr9 136404992 154 - 136640551 ---CCTCACCAGGTCCGCTCAC------------CAAGG---CC--CC-----------------CCTATGTCCCCT---CACCAGG--TCCCCTCACCAAGGCCCC---CCCCATGTC-CCCT-------------CACCAGGTCCTCCTCACC--AGGT----------------TTCCCTAAGTTCCCTCACC-----AGACCACCC---------------CTCACCAG-GCCCCCTCACC-------------------ATGTTTC s mm5.chr5 111488647 195 + 149219885 ---CTACACCAGATCCCCTCACCCCTGAGCTACACCAGA---TC--CC-----------------CTCATCTCTGCTCTACACCAGA--TCCCTTCACCCCTGCTCTA--CACCAGATC-CCCTCACCCCTGAGCTACACCAGATCC-CCTCATCTCTGCT---------------CCACACCAGATCCCCTCACC-------CCTGCTC---------------TACACCAG-ATCCCCTCACCCCTGAGCTAC--AC----CAGA-TCC s rn3.chr11 2855634 201 + 87800381 ----CCCCCCAGAGCTTCCTTC------------CCAGAGCTCC--TT-----------------CTCAGAGCTCCT---TCCCAGAGCTTCCTTCCCAGAGCTCCC---CCCCAGAGCTTCCT-------------TCCCAGAGCTTCCTTCCCAGAGCTTCCTTCCCAGAGCTTCCTTCCCAGAGCTCCCCCCC----AGAGCTTCCTTCC----CAGAGCTCCTCCCCAG-AGCTCCTCCCCAGAGCTCCTT--CC----CAGA-GCT s canFam1.chrUn 2917723 189 + 91062872 ---CCTCACTGGGACccctcac------------ccgga---cc--cctcacccggaccccgtcacccggaccccct---cacccgg--acccctcacccggaccccgtcacccggacc-ccct-------------cacccggacc-cctcacccggacc--------------ccgtcacccggacccctcaca-------gggaccc---------------ctcacccg-gacccctcacccggaccccgtcacc----cgga-ccc s galGal2.chrUn 6450102 175 - 165033910 ---acccccataatcccccaac------------ccata--acc--cc-----------------CCAATGTTCCCC---CCATAGC--CCCCAGTGCC----CTCC---CACCTTGTA-ACCC-------------CACTGTGCCC-CTTCATA---------------------ACCTCCCAATGCCCCCCGCACCCCATAACCCCCCTCT---GTA------CTCCTCGGTAACCCACCAGCCAATAACCCC--CCACGGCATA-ACT s fr1.chrUn 39063374 157 + 349519338 ---CTTCACCAAGGCTGGTCAC------------CAAGG---CTGGTC-----------------ACCAAGGCTGGT---CACCAAG--GCTCTTCACCAAGGCTGTT--CACCAAGGC-TCTT-------------CACCAAGGCT-GTTCACC----------------------------AAGGCTGTTCACC-----AAGGCTCTTTGA---CCAAGGCTGGTCACCAA-GGCTGGTCACCAAGGCT-------------------- s danRer1.chrUn 256768585 155 + 367113659 CAGCCCTGCCGGCTCCCCGCAG--------TACTCCAGG--TCC--AC-----------------CGCAGCTCCACG---CTCCAGG---------------------------------TCCA-------------CTGCAGCTCC-ACTCTCC--GGGT---------------CCTCCGCAGCTCCACTCACC-----GGGCCCTCCACAGCTCCA------CTCTCCGG-G-CCCTCCTCCGCAGCTCCACTCTC----CGGG-C-- a score=-15336.0 s hg17.chr17_random 211602 151 + 2618010 CCTCACCAGGT-CC-------CCTCACCAAGGCTCCC-------CA----------CCCATGTTCCCCTCACCAGG-TCCCCTC---ACCAAGGTCCCCCC--CAGGTCCTCCT------------CACCAGG-TCCCCTCAC----CAAGG-----TCCCCCCTATGTCCCCTCACCAGG--TCCCCTCACCAA-GGTCCCCCCCA s panTro1.chr9 136404910 152 - 136640551 CCTCACCAGGT-CC-------CCTCACCACGGCTCCC-------CA----------CCCATGTTCCCCTCACCATGCTCCCCTC---ACCATG-TCCCCTCACCAGGTCCTCCT------------CACCAGG-TCCGCTCAC----CAAGG------CCCCCCTATGTCCCCTCACCAGG--TCCCCTCACCAA-GGCCCCCCCCA s mm5.chr5 111488842 151 + 149219885 TCTCATCCCTG-CT-------CTACACCAGATCCCCT-------CA----------CCCCTGAGCTA--CACCAGA-TCCCCTC---ACCCCT-GAGCTACACCAGATCCTCTCATCCCTGCTCTACACCAGA-TCCCCTCA------------------CCCCTGAG---CTACACCAGA--TCCCCTCACCCCTGAGCTACACCA s rn3.chr11 2855835 155 + 87800381 CCTCCCCAGAG-CT-------CCTCCCCAGAGCTCCT-------CC----------CCAGAGCTTCCTTCCCAGAG-CTTCCTT---CCCAGA-GCTCCTCCCCAGAG-CTCCT------------CCCCAGA-GCTCCTCCC----CAGAG---CTCCCCCCCAGAGCTTCCTTCCCAGAGCTTCCTTCCCAGA-GCTCCTCCCCA s canFam1.chrUn 2917912 168 + 91062872 cGTCACCGGGACCC-------CCTCACCGGGACCCCCTCA-CCTCA----------CCCG-GACCCCCTCACAGGG-ACCCCTC---ACAGGGACCCCCTCACCCGGATCCCCT------------CACCGGGACCCCCTCACCTCACAAGG-ACCCCCTCACCTGGACCCCCTCACCTGG--ACCCCCTCACAG-GGACCCCCTCA s galGal2.chrUn 6450277 174 - 165033910 --TCACTCTGA-CTCCCATAGCCCCCTCATAGCCACA-------CAAATCCATAACCCCATAGCCCCCATCCCATA-ACCCCATAAAACCACA-ACGCCCC-CCATAACCCCCC------------CACTCCA-TATCTTCAA----TGTGCCCCCAACCCCCCACTATCTCCCCTCATAA--TCCCCCTATCCC-ATTACCCCCCC s fr1.chrUn 39063531 153 + 349519338 CTTCACCAAGG-CT-------CTTCACCAAGGCTGTT-------CA----------CCAAGG--CTCTTCACCAAG-GCTGGTC---ACCAAG-GCTGGTCACCAAGG-CTCTT------------CACCAAG-GCTGTTCAC----CAAGG--CTCTTTGACCAAGGCTCTTTGACCAAG--GCTGGTCACCAAGGCTGGTCACCA s danRer1.chrUn 256768740 152 + 367113659 CCTCCGCAGCT-CC-------ACGCTCCAGGCCCTCCGCAGCTTCA----------CGCTCCAGGCCCTCCGCAGC-TCCACGC---TCCAGG---CCCTCCGCAG---CTCCA------------TGCTCCA-GGCCCTATG----CAGCT------TCACGCTTCAAGCCCTCCGCAGC--TCCACGCTCCAG-GCCCTCCACA- a score=-5017.0 s hg17.chr17_random 211753 3 + 2618010 TGT- s panTro1.chr9 136405062 3 - 136640551 TGT- s mm5.chr5 111488993 3 + 149219885 GAT- s rn3.chr11 2855990 3 + 87800381 GAG- s galGal2.chrUn 6450452 3 - 165033910 TGC- s fr1.chrUn 39063685 2 + 349519338 GG-- s danRer1.chrUn 256768892 3 + 367113659 -GCT a score=343.0 s hg17.chr17_random 211756 99 + 2618010 CCCCTCACCAGGTCCTCCTCACCAGGTTTCC----------------CTAAGTTCCCTCACCAGACCACCCCTCACCAGGCCCCCTCACCATGTTTCTTTCAC-CAGGTCCCCTCA s panTro1.chr9 136405065 99 - 136640551 CCCCTCACCAGGTCCTCCTCACCAGGTTTCC----------------CTAAGTTCCCTCACCAGACCACCCCTCACCAGGCCCCCTCACCATGTTTCTTTCAC-CAGGTCCCCTCA s mm5.chr5 111488996 110 + 149219885 CCCCTCATCC-CTGCTCCACACCAGATCTCCTCACCCCTGTTCTACACTAGTTCCCCTCATC--TCTGCTCCACACCAGATCCCCTCACCC--CTGTCTACAC-CAGATCCCCTCA s rn3.chr11 2855993 85 + 87800381 CTCCTCCCCAGAGCTTCCTTCCCAGAGCTTC-------------------------CTCCCCAGA--GCTCCTCCCCAGAGCTCCTTCCCAGAGCTCCTTCCC----ATCCACTCA s canFam1.chrUn 2919177 94 + 91062872 CCCCTCACCGGGACCCCCTCACCGGGACCCC--------------------CTCACCTCACCCGGAC-CCCCTCACAGGGACCCCTCACAGGGACCCCGTCACCCGGACCCCCTC- s galGal2.chrUn 6450457 92 - 165033910 CCCCACCCCATAGCCCCC---CATGACCCCC----------------CTGTGCCCCCACCCCATA---ACCCCCACTGTGCCCTCCACCCCACTACCCCTCAC-TGCATCCCCCA- s fr1.chrUn 39063687 98 + 349519338 CTGGTCACCA-AGGCTCTTCACCAAGGCTGT-------------TCACCAAGGCTGTTCACCAAG--GCTCTTTACCAAGGCTGGTCACCAAGGCTC-GTCAC-CAAGGCTCTTCA s danRer1.chrUn 256768895 89 + 367113659 CCATGCTCCAGGCCCTCCAGCTCCACGCTCC--------------------GGGTCTTCTGCAAC--TCCATGCCCCAGGTACGC---CCCAGCTGCATGGTC-CTGGCCCTCCA- a score=-7904.0 s hg17.chr17_random 211855 54 + 2618010 ACCAGGCACCCACCCATG--AAGTCCCC-------CTCACTGGGTCCCCTCACCAGGTCCCCT s panTro1.chr9 136405164 54 - 136640551 ACCAGGCACCCACCCATG--AAGTCCCC-------CTCACTGGGTCCCCTCACCAGGTCCCCT s mm5.chr5 111489106 49 + 149219885 CCCCTGAGCTAACC-------AGATCCC-------CTCATCCTTGCTCTACACCAGATCCCCT s canFam1.chrUn 2919271 51 + 91062872 -ACCGGGATCCCCTCACC--GGGACCCC-------CTCCCACGACCACTACACACG--CCCCG s galGal2.chrUn 6450549 63 - 165033910 TCCCGTAACCCCCCCATATTGTGTCCCCATTGTGTCCCCCATAACCCCCACCTCATAACCCCC s fr1.chrUn 39063785 48 + 349519338 --CCAAGGCTCTTCCCCA--AGG--CTG-------TTCACCAAGGCTCTTCACCAAGGCTG-- s danRer1.chrUn 256768984 43 + 367113659 --------TCCCTCCCCC--TGTTCCGC-------CTCCTTTCCACCTCCCGCCTGAACA--- a score=1208.0 s hg17.chr17_random 211909 32 + 2618010 GTAACCAAG-----------------TCCTCCAGGGCCCCCTCCCTAGG s panTro1.chr9 136405218 32 - 136640551 GTAACCAAG-----------------TCCTCCAGGGCCCCCTCCCTAGG s canFam1.chrUn 2919323 41 + 91062872 CTCACCAGA------CAGGAAGGC--TCCTCCCGGTTCCCTCCCGCAGg s galGal2.chrUn 6450614 31 - 165033910 ATAACCACA-----------------CAAACCCAGAACCCCCCCACTG- s fr1.chrUn 39063846 49 + 349519338 GTCACCAAGGCTCTTCACCAAGGCTGTTCACCAAGGCTCTTTGACCAAG s danRer1.chrUn 256769027 32 + 367113659 GTATTAAGA-----------------GTGTCTGGAAGCCCCTCCTTAGA a score=100.0 s hg17.chr17_random 211941 1 + 2618010 G s danRer1.chrUn 256769059 1 + 367113659 G a score=2631.0 s hg17.chr17_random 211941 9 + 2618010 GCTCCCTCA s panTro1.chr9 136405250 9 - 136640551 GCTCCCTCA s galGal2.chrUn 6450645 7 - 165033910 --TCCCCCA s fr1.chrUn 39063895 9 + 349519338 GCTCTTTGA a score=822.0 s hg17.chr17_random 211950 5 + 2618010 GCCAA s panTro1.chr9 136405259 5 - 136640551 GCCAA s galGal2.chrUn 14427137 5 + 165033910 CCCCC s fr1.chrUn 39063904 4 + 349519338 -CCAA a score=-4392.0 s hg17.chr17_random 211955 33 + 2618010 A--TGGAAATCCAGGCAGATACCATGTAGGCAGGT----- s panTro1.chr9 136405264 33 - 136640551 A--TGGAAATCCAGGCAGATACCATGTAGGCAGGT----- s galGal2.chrUn 14427142 22 + 165033910 A--TGG-----------GACCTCATGGAGCCACGT----- s fr1.chrUn 39063908 33 + 349519338 GGCTGGTCACCAAGGCTGGT--CACCAAGGCTGGT----- s danRer1.chrNA 170892308 34 - 390413307 ------CTACCCAGGGGTCCACCTTTCTCCCTGGACTTGC a score=-796.0 s hg17.chr17_random 211988 43 + 2618010 GGGACAGAGCACAGAGCCGACA----GCACCGCA-------------TGGCCCCCTTGCC s panTro1.chr9 136405297 42 - 136640551 GG-ACAGAGCACAGAGCCGACA----GCACCGCG-------------TGGCCCCCTTGCC s galGal2.chrUn 14427164 60 + 165033910 GGGGGTGACGATGGCGATGCCACGCGCCACCGCGCACAGGAATTTGATGGTGCGGCGGAC s danRer1.chrNA 170892342 35 - 390413307 -------AGTATAGGCCCCAGG----GTGCCCC--------------TGGCCCTCCACCT a score=-109.0 s hg17.chr17_random 211988 91 + 2618010 GGGACAGAGCACAGAGCCGACAGCACCGCATGGCCCCCTTGCCAGG---CTCAGACAGGACAGAGGTGTGGAGAGGAGGGCCGGGG---CAGTGAAG s danRer1.chrNA 170892342 78 - 390413307 -------AGTATAGGCCCCAGGGTGCC-CCTGGCCCTCCACCTAGGTGCCTCTGAC-----------GTCAGCAAGCTAACCGGGGGTCCACCGATG a score=-572.0 s hg17.chr17_random 212031 48 + 2618010 AGGCTCAGACAGG----ACAGAGGTGTGGAGAGGAGGGC------CGGGG---CAGTGAAG s panTro1.chr9 136405339 48 - 136640551 AGGCTCAGACAGG----ACAGAGGTGTGGAGAGGAGGGC------CGGGG---CAGTGAAG s canFam1.chr18 30270075 52 - 66173745 AGGCTCTG--AGG----GCTGGAGAAGGGACAGCAAGGTTCTGAGCTGGA---CGAGGAAG s galGal2.chrUn 14427224 46 + 165033910 GCGGTCGGTCA------CCAGATGGGTGCAGTCGAAGAC------GGAGG---CGGCCATG s danRer1.chrNA 170892377 43 - 390413307 ----------AGGTGCCTCTGACGTCAGCAAGCTAA--C------CGGGGGTCCACCGATG a score=1640.0 s hg17.chr17_random 212079 27 + 2618010 TGTCAGGGCT-------CAG--CACCCAGGGTGGCC s panTro1.chr9 136405387 27 - 136640551 TGTCAGGGCT-------CAG--CACCCAGGGTGGCC s canFam1.chr18 30270127 26 - 66173745 CCATGGGGCC-------CAG---ACCTGGAGTGGTG s galGal2.chrUn 14427270 27 + 165033910 GACCC--CCC-------CAGCGCCCCCAGGGCCGCC s fr1.chrUn 39063941 27 + 349519338 CACCAAGGCT-------CTT--CACCAAGGCTGTTC s danRer1.chrNA 170892420 34 - 390413307 TCCCTGGACTTGCAGTATAG--GCCCCAGGGTGCCC a score=-3136.0 s hg17.chr17_random 212106 13 + 2618010 AAGGATG---------GGGCGG s panTro1.chr9 136405414 13 - 136640551 AAGGATG---------GGGCGG s canFam1.chr18 30270153 13 - 66173745 GGGAGTG---------AAGCTG s fr1.chrUn 39063971 20 + 349519338 AAGGCTGTTGACTTGAGAGT-- s danRer1.chrNA 170892454 7 - 390413307 ---CCTG---------ACG--- a score=1047.0 s hg17.chr17_random 212119 15 + 2618010 TTCCACTCAGCTGTG s panTro1.chr9 136405427 15 - 136640551 TTCCACTCAGCTGTG s mm5.chr7 4514658 15 - 133051633 TTCTCCTTAGCTTTA s canFam1.chr18 30270182 15 - 66173745 ACCTAGGCAGCCCCG s fr1.chrUn 39063991 15 + 349519338 CAACAGGCAGCTCTG s danRer1.chrNA 170892461 12 - 390413307 CTCCACCTAGGG--- a score=2826.0 s hg17.chr17_random 212134 8 + 2618010 CCCCCAGA s panTro1.chr9 136405442 8 - 136640551 CCCCCAGA s mm5.chr7 4514673 7 - 133051633 -GCCCAGT s canFam1.chr18 30270197 8 - 66173745 CCTCCAGG s galGal2.chrUn 62581980 8 - 165033910 AGCTCTGA s fr1.chrUn 39064007 8 + 349519338 TTCCTGAC s danRer1.chrNA 170892473 8 - 390413307 CCCCCTGA a score=3663.0 s hg17.chr17_random 212142 89 + 2618010 AGAGACCATAGATT--GGGCAGCTGAAATGCTGGAAGGTTCTGGCTGTGGGAGAGTCTGGGATCCAGGGTCAGGATCAGGGTCTGTGCTGG s panTro1.chr9 136405450 89 - 136640551 AGAGACCATAGATT--GGGCAGCTGAAATGCTGGAAGGTTCTGGCTGTGGGAGAGTCTGGGATCCAGGGTCAGGATCAGGGTCTGTGCTGG s mm5.chr7 4514680 90 - 133051633 ACAAGCCACTGATTTGGGGAAACTGGGGGGCAGG-GGTTTCTGCCTACTGGGGATCTTGGGAGTGCAGGCTTGGGTTGGAGACTGGGTTGA s canFam1.chr18 30270205 79 - 66173745 GAAGGTCACTCACCTGGGGGAGCTGAGGCTCCGGTAGTT-----------GGGACCCTGGGATCCAAGGTGAGGGT-AGGATTGGCGCTGG s galGal2.chrUn 62581988 74 - 165033910 GGAGTCTTTGGACT--GATCTGGAGATGTCCCAGTAGAGTCTGC-----GAGGGTCCAGGGAGCCCTCGTG------TGGGTCTGAG---- s fr1.chrUn 39064015 83 + 349519338 TGAGATCACTGCTT-----CACCCTGAGATAAGACAGGTTTCCACTGTGGGAGTTCCTGCTAAATAATG---GGGCCAGGAACTTTACAGG a score=2457.0 s hg17.chr17_random 212231 6 + 2618010 TTGTGG s panTro1.chr9 136405539 6 - 136640551 TTGTGG s mm5.chr7 4514770 6 - 133051633 TTGTGG s canFam1.chr18 30270284 6 - 66173745 CTGGGG a score=2384.0 s hg17.chr17_random 212237 7 + 2618010 TGGGTGT s panTro1.chr9 136405545 7 - 136640551 TGGGTGT s mm5.chr7 4514776 7 - 133051633 TGGGCAT s galGal2.chrUn 62582062 7 - 165033910 TGGTCAT a score=81.0 s hg17.chr17_random 212237 8 + 2618010 TGGGTGTG s galGal2.chrUn 62582062 8 - 165033910 TGGTCATC a score=100.0 s hg17.chr17_random 212244 1 + 2618010 G s panTro1.chr9 136405552 1 - 136640551 G a score=4620.0 s hg17.chr17_random 212245 45 + 2618010 AGTCAGTGTGGGCGCTGGGGCTGCCCTGGCTGA------CCTCAGAGGCTG s panTro1.chr9 136405553 45 - 136640551 AGTCAGTGTGGGCGCTGGGGCTGCCCTGGCTGA------CCTCAGAGGCTG s canFam1.chr18 30270290 49 - 66173745 AGTTGCGGTGGGCG--GCTGCTGCCTCCTGTGGAACCTTTCTCAGACCCTG s galGal2.chrUn 62582070 41 - 165033910 -----CAGAAGGGTCTGGGGATGTCCCAGGGGGG-----ACTTGGAGGGTG a score=5199.0 s hg17.chr17_random 212290 49 + 2618010 ------CTCACCTGCGGCT----------CCCAACCCCCTTGGACATGGGTGT----------------ACCTTTTTCTTG s panTro1.chr9 136405598 48 - 136640551 ------CTCACCTGCGGCT----------CCCAA-CCCCATGGACATGGGTGT----------------GCCTTTTTCTTG s canFam1.chr18 30270339 80 - 66173745 CTCTTCCTCCCTTGCCACTGCTGGCCATGCCCAC-CCCTGGGGGCATGAGTGTCCTCAAGAGCAAGTGCGCTTTCTTCTTG a score=6099.0 s hg17.chr17_random 212339 26 + 2618010 GCCTTGTCAGGGGTCCTCTTGGGGCT s panTro1.chr19_random 2268315 26 + 57627672 GCCTTGTCAGGGGTCCTCTTGGGGCT s canFam1.chr18 30270419 26 - 66173745 ACTCTGTCAAGGTTCCTCTTGGGGCT a score=1346.0 s hg17.chr17_random 212365 14 + 2618010 CGACACCAGCTTTC s panTro1.chr19_random 2268341 14 + 57627672 CGACACCAGCTTTC a score=18346.0 s hg17.chr17_random 212379 161 + 2618010 AGATGCTGAGCACCCCCGC--CCTGACC--TAGCCCATGGGCGACATGGGGTCTGTGTCCACC-CAGTCCTGGACACTTCCTCTTTCTGGGGCTCCCGCCTCATACCGCTG--CCTCTGCCGCCCGTCTCCCTCCGGACGCCCCCTCCAGACG-CCCCCTCCGGACGAC s panTro1.chr19_random 2268355 161 + 57627672 AGATGCTGAGCACCCCCGC--CCTGACC--TAGCCCATGGGCGACATGGGGTCTGTGTCCACC-CAGTCCTGGACACTTCCTCTTTCTGGGGCTCCCGCCTCATACTGCTG--CCTCTGCCGCCCGTCTCCCTCCGGACGCCCCCTCCAGACG-CCCCCTCCGGACGAC s fr1.chrUn 40640363 156 - 349519338 AGAGGCCGTGCTCCTCTACAGCCGGGCCATCAGCCAGCTGGAGAAGTCCAGTAAGTGTCCACAGCAG-------CACAGCCTTCTT------CTTCCACCCTCTACAGGTGACCCTCTGCAGGTGACCCTCTACAGGGGACCCTCTACAGGTGACCCTCTACAGGTGAC a score=52.0 s hg17.chr17_random 212540 6 + 2618010 CACGCA s panTro1.chr19_random 2268516 5 + 57627672 CACG-A a score=9721.0 s hg17.chr17_random 212546 108 + 2618010 GTGTTGTCTGGCTCTGTGCTCTGTCCACCTGCCTGCGTGGCGTCTGCCT--------GGATTTCCATTTTGGGTCTTGCCTGTGGTGTGCCTGCTCCTGTGTGGACCCT----GTGTGTA-- s panTro1.chr19_random 2268521 108 + 57627672 GTGTTGTCTGGCTCTGTGCTCTGTCCACCTGCCTACGTGGCGTCTGCCT--------GGATTTCCATTTTGGGTCTTGCCTGTGGTGTGCCTGCTCCTGTGTGGACCCT----GTGTGTA-- s danRer1.chrFinished 26456110 118 + 40167097 GTGTTCTTCAGGTCTGTGTTCCTCGGGTGTGTTCTTAAGGTGTGTGCTCCTCAGGTGTGATCTTCA-GGTGTGTGTTCTCAGCAGTGT---TTCTCAGGGGTGTGTTCTTCAGGTGTGTGTT a score=51372.0 s hg17.chr17_random 212654 582 + 2618010 CCTCTGTGGGGACTTTCACACGTGTGTTCCT-TGAGTGGGATCCTC-------------------------------TGTATGT------------------GGGTCTGTGTGTGTGGCTGTGGCCC-------TGTGTTCCT--GATG---TCCCCACTTGTGTGCCCCTCTGTGGGGACTTTTGCACGTGTGCTCCTTGAGTGG-GATCCTC-TGTATGTGGGTCT---GTGTGTGTGGC-TGTGGCCCCGAGTGTGTTC--CTGATG---TCCCCATTTGTGTGCCCCTCTGTGGG-GACTTTC-GCACTTGTGCTTCTTGAGTGGGATCCTCTGTATGTGGGTCTGTGTGTGTGGCTGTGGCCCT---GAGTGTGTTCCT-----GATGTCCCCATTTGTGTGCCCCTCTGTGGG-GACTTTCGCACGTGTGCTCCTT--GAGTGG-GATCCTC-TGTGTGTGGGTCT---GTGTGTGTGGCT----------GTGGCCCTGTG------------------------TTCCTGATG------------------TCCCCACTTGTGTGCCCCTCTGT-GGGGACTTTCGCATGTGTGCTCCTTGAGTGGGATCCTCTGTGTGTGGGTCTGTGTGTGTGGCTGTGGCCC-------TGTGTTCCTGATG-----TCCCCATTTGTGTGTCCCTCTGTGGGGGACTTTCGCACGTGTGCTCCTTGAGTAGGATCC s panTro1.chr19_random 2268629 577 + 57627672 CCTCTGTGGGGACTTTCGCACGTGTGCTCCT-TGAGTGGGATCCTC-------------------------------TGTATGT------------------GGGTCTGTGTGTGTGGCTGTGGCCC-------TGTGTTCCT--GATG---TCCCCATTTGTGTGTACCTCTGTGGGGACTTTCGCACGTGTGCTCCTTGAGTGG-GATCCTC-TGTATGTGGGTCT---GTGTGTGTGGC-TGTGGCCC----TGTGTTC--CTGATG---TCCCCATTTGTGTGTCCCTCTGTGGG-GACTTTC-GCACGTGTGTTCCTTGAGTGGGATCCTCTGTATGTGGGTCTGTGTGTGTGGCTGTGGCCCC---GAGTGTGTTCCT-----GATGTCCCCATTTGTGTGTCCCTCTGTGGG-GACTTTCACACGTGTGCTCCTT--GAGTGG-GATCCTC-TGTATGTGGGTCT---GTGTGTGTGGCT----------GTGGCCCTGTG------------------------TTCCTGATG------------------TCCCCATTTGTGTGTCCCTCTGT-GGGGACTTTCGCACGTGTGCTCCTTGAGTGGGATCCTCTGTATGTGGGTCTGTGTGTGTGGCTGTGGCCC-------TGTGTTCCTGATG-----TCCCCATTTGTGTGTCCCTCTGT-GGGGACTTTCGCACGTGTGCTCCTTGAGTGGGATCC s fr1.chrUn 40640519 548 - 349519338 CCTCTATAGGGGACCCTCTACAGGTGACCCTCTGCAGGTGACCCTC-------------------------------TGCAGGT------------------GACCCTCTGCAGGTAACC----CTC-------TATA-------GGTG---ACCCTCTGCAGGTGACCCTCTACAGGGGACCCTCTACAGGTGACCCTCTATAGGTGACCCTC-TATAGGTGACCCT---CTATA-------GGTGACCC----TCTG-----CAGGTA---ACCCTCTATAGGTGACCCTCTGCAGGTGACCCTCTGCAGGTGACCCTCTACAG-GGGACCCTCTACAGGTGACCCTCTATAGGTGACC----CTCT---ATAGGTGACCCTCTATAGGTGACCCTCTATAGGTGACCCTCTGCAGGTGACCCTC-TATAGGTGACCCTC--TATAGGTGACCCTC-TATAGGTGACCCT---CTGCAGGTGACCCTCTGCAG--GTGACCCTCTG---------------------------CAGGTG------------------ACCCTCTACAGGTGACCCTCTATAGGGGACCCTCTACAGGGGACCCTCTGCAGGGGACCCTCTATAGGGGACCCTCTATAGGTGA-----------------------------------CCCTCTGCAGGTGACCCTCTATAGGGGACCCTCTACAGGGGACCCTCTGCAGGGGACCC s danRer1.chrFinished 26456228 687 + 40167097 CCTCAGGTGTGATCTTCAGGTGTGTGTTCCT-CAGGTGTGATCTTCAGGTGTGTGTTCCTCAGGTGTGTTCTTCAGGTGTGTGTTCCTCAGGTGTGATCTTCAGGTGTGTGTTCGCAGCAGTGTTCCTCAGGTGTGTGTTCCTCAGGTGTGTTCTTCAGGAGTGTGTTCCTCAGGTGTGTTTTTCAGGTGTGTGTTCCTCAGGTGT-GATCTTCAGGTGTGTGTTCCTCAGGTGTGTTCTTCAGGTG--------TGTGTTCCTCAGGTGTGTTCTTCAGGAGTGTGTTCCTCAGGTGT-GTTTTTC-AGGTGTGTGTTCCTCAGGTGTGATCTTC-------AGGTGTGTGTTCACAGCAGTGTTCTTCAGGTGTGTGTTCCTCAGGTGTGATCTTCAGGTGTGTG-----------------TTCGCAGCAGTGTTCCTCAGGAGTGT-GTTCTTCAGGTGTGTGTTCCTCAGGTGTGTGTTCCT-----CAGGTGTGTTCCTCAGGAGTGTGTTCCTCAGGAGTGTGTTCCTCAGATGTGTTCTTCAGGAGTGTGTTCTTCAGGAGTGTGTTCCTCAGG-TGTGTTCTTCAGGTGTGTGTTCCTCAGGTGTGATCTTC-------AGGTGTGTGTTCGCAGCAGTGTTCCTCAGGTGTGTGTTCCTCAGGTGTGTTCTTCAGGTGTTTGTTTCTCAGT-TGTGTTCTTCAGGTGTGTGTTCCTCAGGTGTGTTCT a score=-29.0 s hg17.chr17_random 213236 11 + 2618010 TCTGTATGTGG s panTro1.chr19_random 2269529 11 + 57627672 TCTGTATGTGG s fr1.chrUn 40641067 11 - 349519338 TCTATAGGGGA s danRer1.chrFinished 26456915 4 + 40167097 CCAG------- a score=2677.0 s hg17.chr17_random 213247 9 + 2618010 GTCTGTGTG s panTro1.chr19_random 2269540 9 + 57627672 GTCTGTGTG s canFam1.chr18 30270697 9 - 66173745 GCCTGTCTG s fr1.chrUn 40641078 9 - 349519338 CCCTCTATA s danRer1.chrFinished 26456919 9 + 40167097 GTGTGTGTT a score=450.0 s hg17.chr17_random 213256 5 + 2618010 TGTGG s panTro1.chr19_random 2269549 5 + 57627672 TGTGG s canFam1.chr18 30270706 5 - 66173745 TCTGT s danRer1.chrFinished 26456928 5 + 40167097 CGCAG a score=207.0 s hg17.chr17_random 213256 6 + 2618010 TGTGGC s danRer1.chrFinished 26456928 6 + 40167097 CGCAGC a score=300.0 s hg17.chr17_random 213261 1 + 2618010 C s panTro1.chr19_random 2269554 1 + 57627672 C s rn3.chr1 66967471 1 - 268121971 C a score=-6863.0 s hg17.chr17_random 213262 49 + 2618010 --TGTGGCCC---TGTGTTCC-----TGATGTCCCCATTTGTGTGTCC-CTC-----TGTGGGGA s panTro1.chr19_random 2269555 49 + 57627672 --TGTGGCCC---TGTGTTCC-----TGATGTCCCCATTTGTGTGTCC-CTC-----TGTGGGGA s rn3.chr1 66967472 40 - 268121971 --TGTGCCCC---AGTGTTCAT---GTGATGTCCCGAGGT-----------------CGAGGCCG s canFam1.chr18 30270711 49 - 66173745 ---CTTGCTC---TATCTTCA-----CGGGGGTCTGGCGGGTCTGCCCTCTG-----TGTGGGGC s fr1.chrUn 40641087 46 - 349519338 --GGTGACCC---TCTGC--------AGGTGACCCTCTACAGGGGACC-CTC-----TATAGGGG s danRer1.chrFinished 26456934 59 + 40167097 AGTGTTCCTCAGGTGTGTTTCTCAGGTGTTTTCTTCAGGTGTGTGTTC-CTCAGGTTTGT----- a score=4321.0 s hg17.chr17_random 213311 11 + 2618010 CTTTTGCACGT s panTro1.chr19_random 2269604 11 + 57627672 CTTTCGCACGT s rn3.chr1 66967512 11 - 268121971 CTCTCACACAT s canFam1.chr18 30270760 11 - 66173745 TACTTCTACGT s fr1.chrUn 40641751 11 - 349519338 CCTCTGCAGGT s danRer1.chrFinished 26456993 11 + 40167097 GTTCTCCAGGT a score=100.0 s hg17.chr17_random 213322 1 + 2618010 G s danRer1.chrFinished 26457004 1 + 40167097 G a score=-31.0 s hg17.chr17_random 213322 1 + 2618010 G s canFam1.chr18 30270773 1 - 66173745 A a score=100.0 s hg17.chr17_random 213322 1 + 2618010 G s panTro1.chr19_random 2269615 1 + 57627672 G a score=0.0 s hg17.chr17_random 213322 1 + 2618010 G a score=100.0 s hg17.chr17_random 213322 1 + 2618010 G s fr1.chrUn 40641762 1 - 349519338 G a score=-471.0 s hg17.chr17_random 213323 90 + 2618010 TGCTCCTTGAGTGGGATCCTCTGTATGTGGGTCTGTGTGTGTGGCTGTG---GCCTCGAGTGTGTTCCT-----GATGTCCC-CATT-----TGTGTGCCCCTC s panTro1.chr19_random 2269616 90 + 57627672 TGCTCCTTGAGTGGGATCCTCTGTATGTGGGTCTGTGTGTGTGGCTGTG---GCCCCGAGTGTGTTCCT-----GATGTCCC-CATT-----TGTGTGCCCCTC s mm5.chr7 4515154 89 - 133051633 TGCTTCCGGAAAGTGACCTTGCAT-TATGAGTTTGCATCTTTTGGTTTA---TCTCTCAGGGTGCCTCT-----GATAGGAC-TTTT-----TGTGTGTCCCTG s rn3.chr1 66967523 88 - 268121971 TGCTTCTGCAACGTGACCCTC---ATAAGAGTTTGTACCTCTTGGTGTA---TCTCTCAGGGTGCCCCT-----GAAAGGACTTTTT-----TGTGTGTCCTGG s canFam1.chr18 30270774 45 - 66173745 GGCTCTGTGGATGGGACCCTGTGCATGCAAGT---------------GA---GCCCTGAGTGT----------------------------------------- s fr1.chrUn 40641763 90 - 349519338 -ACCCTCTATAGGGGACCCTCTATAGGTGACCCT----CTGCAGGTGAC---CCTCTACAGGGGACCCTCTACAGGGGACCC-TCTA-----TAGGTGACCCTC s danRer1.chrFinished 26457005 92 + 40167097 TGTTTCTCAGGTGTTTTCTTC---AGGTGTGTGT---TCCTCAGGTTTGTGTTCTCCAGGTGTGTTTCT-----CAGGTGTT-TTCTTCAGGTGTGTGTTCCTC a score=-429.0 s hg17.chr17_random 213413 8 + 2618010 TGTGG-GGG s panTro1.chr19_random 2269706 8 + 57627672 TGTGG-GGG s mm5.chr7 4515243 9 - 133051633 TGTTGCAGG s rn3.chr1 66967611 8 - 268121971 CTTTC-AGG s canFam1.chr18 30270819 3 - 66173745 ------GCG s fr1.chrUn 40641853 8 - 349519338 TGCAG-GTG a score=115482.0 s hg17.chr17_random 213421 344 + 2618010 CAGAGACAGGAGCC------TGAGCTGCGGAAGAGGCTTTATTGATTAAACGGTTTGAGGATACATTTCCATGT---GGGAGGTGGTNAGTNGGNGCGTTGTGTCCACGGCTGCTTGTGTGGCAGGTCCTATGGCT----------GAGCCATGTCTGAGGTCCACTTAGGCACCGTCCTGACTGCCCAGCACTTGCACCTGGAAGGCAGACACATGTGGACTAAGAGGGCT----------------GTGCTCAATAAGTGGAGAGCCACAGCTCCATCAGGCAAGCAAGGCNCNNC---TCANNNNGTNNGGGGNGGGGGG------TCTGGCATATTGCTGCCTATCTCCTCCCAGCAGCTNNGGNGNAGgtgtgtgtgcacatg s panTro1.chr19_random 2269714 325 + 57627672 CAGAGACAGGAGCC------TGAGCTGCAGAAGAGGCTTTATTGATTAAACGGTTTGAGGATACATTTCCATGT---GGGAGGTGGT-AGTGGG--CGTTGTGTCCACGGCTGCTTGTGTGGCAGGTCCTATGGCT----------GAGCCATGTCTGAGGTCCACTTAGGCACCGTCCTGACTGCCCAGCACTTGCACCTGGAAGGCAGACACATGTGGACTAAGAGGGCT----------------GTGCTCAATCAGTGGAGAGCCACAGCTCCATCAGGCAAGCAAGGCCC------TCAGT---------GGGGGGGG------TCTGGCATATTGCTGCCTATCTCCTCCCAGCAGCTGGG----AGgtgtgtgtgcacatg s mm5.chr7 4515252 350 - 133051633 GAGAGAGAGAAGCCAGCACATGGGCTGCAG--TAGGCTTTATTGATTTAACAGTTCGAGGGTGAATTT--ATTC---GTGAAGAAGC-AGTGATCGCGGCACATCCATGGTCGC-TGTAGGGCTGGTCCTGTCGCTCATGGAAGTCAAGCCGTGTTTCGGGTCTGCTTATGTGTCCTCTTGAGCATCTAGCACTTGCACCTGAAAGAGAGATGTGTGGGGACCAGGAGACCT---------------GGTAACCAACAACCGGATC-CCCCAGTCCCAGC-GGCAGACAGTGCTGTGCACACCAGT---------GGAGGAGA-CAGACTCCTGAGCATGGTGACCCACCT-CTCCTAGCACCCTGGGGA-GGGGCTGTGTGCACATG s rn3.chr1 66967619 351 - 268121971 GAGAGAGAGAAGCTAGTGCATGGACTGCAT--TAGACTTTATTGATTTAACAGTTCGAGGGTGAATTT--ACTG---GTGAAGAAGC-ACTGGTCTTAGCACATCCATGGCCACGTGTACGGCTGGTCCTATTGCTCGCAGAGGTCAAGCCATGTTTCGGGGCTGCTTATGTGTCCTCTTGAGCATCTAGCACTTGCACCTGAAAGAGAAATGTGTGGGGACCAGGAGAGCT---------------GGTAACCAACAACCAGAGC-CCCCAGTCCCAGA-GGCAGACAGGGCTGTGCACACCAGC---------GGAGTAGA-CAGGTTCCTGCGCACTGTGGTCTACCC-CTCCTAGCACCTTGGGGA-GGGATTGTGTGCACATG s canFam1.chr18 30270822 364 - 66173745 GAGAGACAGGAGCCAGAGCCTGATCTGCAG--GAGGCTTTATTGACTGAATAGTTTTCGGATAAGTTC--ACGCACAGGAAAGTGGT-GATGGG-GTGGCGTGGCTGTGGCTGATTGTGTAGCTGGTCCTGTGGCCGCCTG-----GAGCCATGACTGGGGTTTG-TTAGGCTTCATCTTCACTGCCCAGCACTTGCACCTGGAAGGCAGATAGGTGTAGGCCAAGGGGGCTGGGGGTCCCATCGCTGGTGATCAATAACTAGAAAGCCCCATCTCCATTGGGCAGATAGGCCCAGGCCAGCCCCT---------GGGGAATAGTAGGCTCTGGCAGTTTTTGGCCAGTCC-CCCCCAGCAGCTGGGGA--AGGGGTGTGTGCGCCTG a score=753.0 s hg17.chr17_random 213765 2 + 2618010 tg s panTro1.chr19_random 2270039 2 + 57627672 tg s mm5.chr7 4515602 2 - 133051633 TA s canFam1.chr18 30271186 2 - 66173745 TG a score=0.0 s hg17.chr17_random 213767 46 + 2618010 atggtgtgcacacatgtatgtgtgtgcatatcccagtgtgagcatg a score=436.0 s hg17.chr17_random 213767 3 + 2618010 atg s panTro1.chr19_random 2270041 3 + 57627672 atg s mm5.chr7 4515604 3 - 133051633 CTG a score=4102.0 s hg17.chr17_random 213770 43 + 2618010 gtgtgcacacatgtatgtgtgtgcatatcccagtgtgagcatg s panTro1.chr19_random 2270044 43 + 57627672 gtgtgcacacatgtatgtgtgtgcatatcccagtgtgagcatg a score=10363.0 s hg17.chr17_random 213813 98 + 2618010 tgggtgtgaacgtgtttatacatgtgtgcacgcagtgtacatttcatgtctgcacctgtgtttggatctctgtgtatgttcacatgtgtgcatgGAGG s panTro1.chr19_random 2270087 98 + 57627672 tgggtgtgaatgtgtttatacatgtgtgcacgcagtgtgcatttcatgtctgcacctgtgtttggatctctgtgtatgttcacatgtgtgcatgGAGG s canFam1.chr18 30271188 56 - 66173745 TGGATGTGTGCGTGTT--------CTTGTACACAG----------ATG------------------TTTCTGCGCATG------TATGTGCATGTAGG a score=-800.0 s hg17.chr17_random 213911 31 + 2618010 AGTATCCCACAGACTGGGGAGGAGGTCTATG s canFam1.chr18 30271244 1 - 66173745 ------------------------------G a score=1428.0 s hg17.chr17_random 213911 15 + 2618010 AGTATCCCACAGACT s panTro1.chr19_random 2270185 15 + 57627672 AGTATCCCACAGACT a score=2210.0 s hg17.chr17_random 213926 16 + 2618010 GGGGAGGAGGTCTATG- s panTro1.chr19_random 2270200 16 + 57627672 GGGGAGGAGGTCTATG- s mm5.chr7 4515637 17 - 133051633 GGGAAGCAGTTCTAAGA a score=325148.0 s hg17.chr17_random 213942 1204 + 2618010 GAGTCTGGGGGCTGCTCGGTGGACAGGANGGTCTGGGGTGTCCACCTGAGCTGGCTGATGCGGGTGCAATGTCTGTGGGTGGTGGATGTCTGTGGGTGGGGTAGGCTGTGTGGGTGCTGTGTTGGGTGGTC-------TTGGTAAGGCTGCAGATCTTTAGAAAATGGGGTGC---------------CCGCCGCCCTCATACCAGCAGCTTGACCAGCTCCGCCTTGTGCATTGGCTGCAGGCCATCTCTGCAGGACTTGAGTTCAGTCATTGCTGCCTTGGCATCTTCGTTGACATTGTACTTGCCCAAGGTCCCCTCATAGAGCTCCTCTGGGGTCCCCACCAGTAGTGTTTGCAGGAAGTCCATGAAAAACTCATCGTTGTCCTCCCCCGTGGCCATCCCTGC---ATCACGAGCGAGAT--GATGCCAGGACAGGACAGGGTGACTCTGGTGCAACCACAGCCCTGGACCTGCCCCAGGGCTCTA-ACCTCCATGGTCTCCAGACCTTCCCCTTCAATGCTCACCT--CTCCTCCCCAGGGCTTCCTCCACAACACCTCCAACTCCACCTTGCCCGAAGA-CCCCTCCACATCCCCCTTAATCTTAGCTGCTCCAATTTCCACTCAGCATTCCCTGGGATCACCAGGGAAGGAAAGTTAAGCTCCTGGTGTGGGGGAAATTTCCCCTGATGAG-AGGCTATTATGACCAGAGGCTTGAAgggtc-aggtcaggctggactgg---------gctggggtaggagacactgg-------------gctggtgttgggtcagctgggctTTGTCCTNTGGTNGGGGTGNNNANNNAN--GGGTGGGCGCGGGT-TCTGCAGGGTCCTTGCCCACT------------TCTGTGACAGAAGCAGGTGG---------------------AGTGTTCACTGC----AGAGGCCCGATGCC-AGGATTTTACCTTCTCAGGTACCCCCCANNNNTCNCCCCCC-----GCCCCTGAATGTTCTGGAAACCCCAGTGGCACAGACTCACGGCAGATGCAGAACAGGGTGAGGGCCACCAGCAGGAGGGCACGGCTCCCCTTCATGCC-GGCAG--------TCTCAGGAGCTGCCTCCAGCCAGAATCCCGGGATTTTATGCCTCACCGGACAGCACCTCTCCTAGAGGGCGGACCGGACCTGCCCATTAGGAC-CCGGCAG-------CCAGCTTAGAT-----GAGGTTTGTTCACATCCCTGGCCCCCAGTGGGTGCCAAGCAGCAACAGGCATGGAGTGGCTGTGTGACAGGTGGTTGGCAAGC s panTro1.chr19_random 2270216 1195 + 57627672 GAGTCTGGGGGCTGCTCGGTGGACAGGA-GGTCTGGGGTGTCCACCTGAGCTGGCTGATGCGGGTGCAATGTCTGTGGGTGGTGGATGTCTGTGGGTGGGGTAGGCTGAGGGGGTGCTGTGTTGGGTGGTC-------TTGGTAAGGCTGCAGATCTTTAGAAAATGGGGTGC---------------CCGCCGCCCTCATACCAGCAGCTTGACCAGCTCCGCCTTGTGCATTGGCTGCAGGCCATCTATGCAGGACTTGAGTTCAGTCATTGCTGCCTTGGCATCTTCGTTGACATTGTACTTGCCCAAGGTCCCCTCATAGAGCTCCTCTGGGGTCCCCACCAGCAGTGTTTGCAGGAAGTCCATGAAAAACTCATCCTTGTCGTCCCCTGTGGCCATCCCTGC---ATCATGAGCGAGAT--GATGCCAGGACAGGACAGGGTGACTCTGGTGCAACCACAGCCCTGGACCTGCCCCAGGGCTCCA-ACCTCCATGGTCTCCAGACCTTCCCCTTCAATGCCCACCT--CTCCTCCCCAGGGCTTCCTCCACAACACCTCCAACTCCACCTTGCCCGAAGA-CCCCTCCACATCCCCCTTAATCTTAGCTGCTCCAATTTCCACTCAGCATTCCCTGGGATCACCAGGGAAGGAAAGTTAAGCTCCTGGTGTGGGGGAAATTTCCCCTGATGAG-AGGCTATTATGACCAGAGGCTTGAAgggtc-aggtcaggctggactgg---------gctggggtaggagacactgg-------------gctggtgttgggtcagctgggctttgtc-tttggttggggtgg------agtagggtgggcACGGGT-TCTGCAGGGTCCTTGCCCACT------------TCTGTGACAGAAGCAGGTGG---------------------AGTGTTCACTGC----AGGGGCCCGATGCC-AGGATTTTACCTTCTCAGGTACCCCCCAC---TCCCCCCCC-----ACCCCTGAATGTTCTGGAAACCCCAGTGGCACAGACTCACGGCAGATGCAGAGCAGGGTGAGGGCCACCAGCAGGAGGGCATGGCTCCCCTTCATGCC-GGCAG--------TCTCAGGAGCTGCCTCCAGCCAGAATCCCGGGCTTTTATGCCTCACCGGACAGCACCTCTCCCAGAGGGCGGACCGGACCTGCCCATTAGGAC-CCGGCCG-------CCAGCTTAGAT-----GAGGTTTGTTCACATCCCTGGCCCCCAGTGGGTGCTAAGCAGCAACAGGCATGGAGTGGCTGTGTGACAGGTGATTGGCAAGC s mm5.chr7 4515654 997 - 133051633 GACTTTGGAAACTTCTCTGCGA-------GGTC-------TCCATCTCTGCTGGCTGATG-------GAGATCTGGGGATCGGGGAGGACTGGTGATCCAGCA-----------------CCAGGAGGGTC-------TCGGAAGAACTGCAAACATTCGGGGATGGGAGT------------------CCCAGCCCGATTACCAGCAGCTTGACCAGTTGCTCCTTATGCACAGGCTGTAGTTCATCGATGCAGGACTTGAGCTCGCTCAGCGCTGACTTGGCCATGTCATTGACATTGTACTTGCCCAGGGGCCCTTCGTAGAGTTCTTCCGGGGTCCCCACCAGGAGTGTTTGCAGGAATTCCATGAAAAACTCATTGTCATCCTCTGCTCTAGTCAGCCCTGT---GTTGCAAAGGGGATACAATGCCGAGGGAGG-------GACT-----------------------------------------------TGATCTCCTGTCCTTGTCTTTC-----------------------------------TAGCACTCCCAGGTCAACCT-----GCAGATCCCTTCCCCATCACCACTAGTGGGAGCTGCTGTGGTTTCCCCCCTG-ACTTCCTGACCTCACCAGGGAAGAGAAG---------------GGGGAGTTCTTCCCCTG-------GGCTAACTGGATC-------CAGAGGGTC-AGGTCAAACCGGATTGC---------TCCAGGGTGGGCGGCATTGGCCTCGGTGGTTA-GTTAGTGTTAGGTCA----------------------GGGTGG-------GTTGGGAGAGAACTGGTGTCAACAGATTTCCTG--CACTTAGGGGGTGGGGTCTGTGACACTGGTAGGC-----------------------ATTGCCCA-------------CCTGATCCC-AGGATTTCAGCCTCTTGGG-GCCCCTTAC------------------CTACCGAAAGTGCTAGAAAC----AAGGCCCAGACTTACCACAGACGCAGAGCAGGCTTAGGGCCACCAGCAGAAGAGCGCTGCTCCCTTTCATGGT-GACAG--------TCACAAGAACTGCTT----GGGGGATACCAGGCTTTTATGCTGTAGAAGGTGGCACCTTGCCCGG-----GGGCGGGGCATACCTCTCAGGAC-CTGGCAG-------GACAACTGGGC-----CAGG------CATGTCACTGTGCTCCATTAGGTGCCAAGAAGTGCCAAAC-TTGAGTGGATCATAAGGGGGCAGTTGGCAAAC s rn3.chr1 66968019 993 - 268121971 GATGTTGGAAACTTCTCTGTGA-------GGTC-------TCCACCTCTGCCTCCTGATG-------GAGATCTAGGGATCAGGGAGGCCTGGTGATCAGGTATCATGCATGGGTG-----------GGTA-------TGGAAAGAGCTGCAGACGTTTGGGGATGGGAGT------------------CCCAGCCCGATTACCAGCAGCTTGACCAGTTGCTCCTTATGCACCGGCTGCAGTTCATCAATGCAGGACTTGAGCTCTGTCAGCGCTGCCTTGGCCATGTCATTGACATTGTACTTGCCCAGGGGCCCTTCATAGAGCTCTTCTGGGGTCCCCACCAGGAGTGTTTGCAGGAATTCCATGAAAAACTCATTGTCATCCTCTGCTCTAGTCAGCCCTGT---ATTGCAAAGGGGATACAATGGCGAGGGAGG-------GACT-----------------------------------------------TGATCTCCTGTCCTTCACTCCCAGGG---------------------------------------------TGACCT--TCTGCAGATCCCTTCCCCATCACCACTAGTGGGAGCTGCTGTGGTTTCCCCTCTA-ACTTCCTGACCTCACCAGGGAAGAAAAG-----------------GGGGATTTCCCCCCGCCTG---GGTTAACTGGATC-------CAGAGGGCC-AGGTCAGATTGGATTGA---------GCCAGGGTGGACAGCATTGGCCTTGGTG-----GTTGGTGTTAGGTCA----------------------GGGTGG-------GTTGGGATAGGACTGGTGTCAACAGATTCCCAG--CGCTTTGGGTGTGGGGTCAGTGACACAGGTAGGC-----------------------ACCGTCCA-------------CCTGGTCCC-AGGATTCCAGCCTCTTGGT-GCCCCTTAC------------------CTACCAAA-GTGCTAGAAAT----AAGGCCCAGACTTACCACAGATGCAGAGCACGGTTAGAGCCACCAGCAGAAGAGCGCTGCTCCCTTTCATGAT-GACAG--------TCACAAGAACTGCTT----GGGGGATACCAGGCTTTTATGCTGTAGAAGATGGCTTCTTGCCCAG-----AGGCGGGGCATACCTCACAGGAT-CTGGCAG-------GACAACTGGGC-----CGGG------CATGTCACTGTGCTCCACCAGGTGCCAAGAAGTGCCAAAC-TTGAGTGGATCATAAGGGGGCTGTTGGCAAAC s canFam1.chr18 30271245 1183 - 66173745 GAGGCTGGGGGTGATTGTGGGGAGCGA--GGTCTGGGATGTCCACTT-------CTGACA---GTGCCGGGTC---------AGGGTATCTGTAGGGGTGGTGGGCTACATTGGGGGCATAATTGGGAGCCATGGCATTTGGTGGAAGGCCAGTAGGGCAGGAATTGGGTTACCCTCCCCCACCCCGGCCGCAGCCCTGGTACCAGTAGCTTGACCAGCTCCGCCTTGTGCATGGGCTGTAGGCCGTCTATGCAGGACTTGAGCTCAGTCAGCGCCGCTTTGGCATCTGCATTGACGTCGTACTTGCCCAGGGGCCCCTCGTACAGCTCCTCTGGGGACCCCACCAGCAGCGTTTGCAGGAAGTCCATGAAAAACTCACTGCTGTCCTCGTCAGAGGCCAGCCCTATGGGGGCGGGGGCGGGAT--GACACCAGGACAGC-AGGATTGCCT----------------------CCTAGCCCGTCACTCCAGACCTCCCAGCACTCCAGCCC----CCCGCAATGACCACCTGCCTCCT----------------------CCCCCAACTCTACAC-GCCCACAGA-CCCCTCC-TGTCACTCCTGACCTCATCTGCCTCACTCCACCCTCGG-TTCCCCCAGCGTCACGAGGGAAGCCTCG---------------GCTGGAGTCTTCCCACATGAGGTCGGCT-----GACCCACAGCTTGGAGGGTTGGGGTCTGACTGGGATGGCTTGGTGACATCGGGCTTGGTGACgctagggctggggcagaggctggcgctgggctgggtgggggtggggctTTGTGGGGAGTGC-----------GGTCGGTGGGGGTGT---CAGGGTCGGTGCCCACA-----CCTGCGTTCTCTGACGGAGGCCGGTCGGGGACCTGGCATGGCAAGGCTGCTGCCCATCGCTGTGAAGGGCCTAGTGCCTAGGTTTGCAGCTGCCCAGG-TCCCCATCC---ACCCCCCACACAGGGCCCCTGG--GTGCTGGGAGC-------ACTCAGACTCACCGCAGGAGCAGAGCAAGGAGAGGGCCACCAGCAGGAGGGTGCTGCTTCCCTTCATGGCAGACAGCAGAGGTCTCTCAGGAGCTGCCT---------CTGCCGG--CTTTATGCCTCA-CAGGTGGCATCTGGCCTGG-GGGTGGCCCCAACCTGCCTGTCAAGACTTTGGCAGTGAGCGTGAAGGTTGGGCAGCTGGGGGTGTGTCCTCA-CCCTGGGATCACATGGGTGTCGAGCAGCAGCAGGC-TTGGGC-GCCGTGTGAGGGGTGGTGTGCATGT a score=100.0 s hg17.chr17_random 215146 1 + 2618010 G s canFam1.chr18 30272428 1 - 66173745 G a score=100.0 s hg17.chr17_random 215146 1 + 2618010 G s panTro1.chr19_random 2271411 1 + 57627672 G a score=0.0 s hg17.chr17_random 215146 1 + 2618010 G a score=35351.0 s hg17.chr17_random 215147 407 + 2618010 GCTTTAGGGTGTGTGAGAGAGAGAACAGGTGTGTTAGGAGGGAACACTGGTGAGAGGCCATGCCAACTGATCGGTGAAGAAGGCAGTGGGTCCTGGCCACCAAGGGCCTCTAGTCATGCCTG--CCCTTGAGGCCGAGAGTGGTGGGATCTGGGGTTGGTCCCACGCCTTTCTTTTAAG---GTGGGAATCCCTCCTCTTATCAGTGTGCTGTGTGATCTGGGTCTGCATCTGGGGGTCTCCAATC------AGGCAGGGGCC-CCTTACTACT-CAGATGGGGTGGCCGAGTAGGGGAAGGGG-GTGCAGGCTGCACGAGTGGACACAGCTGTAGGACTACCTGGGGGCTGT--GGATCTATGGGGTGGGGAGAAGCCCAGTGACAGTGCCTAGAAGAGAGAAGGTGGCCTGAGAGGGTCTG s panTro1.chr19_random 2271412 407 + 57627672 GCTTTAGGGTGTGTAAGAGAGAGAACAGGTGTGTTAGGAGGGAACACTGGTGAGAGGCCATGCCAACTGATCGGTGAAGAAGGCAGTGGGTCCTGGCCACCAAGGGCCTCTAGTCATGCCTG--CCCTTGAGGCCGAGAGTGGTGGGATCTGGGGTTGGTCCCATGCCTTTCTTTTAAG---GTGGGAATCCCTCCTCTTATCAGTGTGCTGTGTGATCTGGGTCTGCATCTGGGGGTCTCCAATC------AGGCAGGGGCC-CCTTACTACT-CAGATGGGGTGGCCGAGTAGGGGAAGGGG-GTGCAGGCTGCACTAGTGGACACAGCTGTAGGACTACCTGGGGGCTGT--GGATCTATGGGGTGGGGAGGAGCCCAGTGACAGTGCCTAGAAGAGAGAAGGTGGCCTGAGAGGGTCTG s rn3.chr1 66969012 331 - 268121971 ATGTTGGGGTAAGTGGAATAAAT-CCAGGTCTG------GGTAAACCTAG----------TGCTAGTTAAC--ATGGAGGAG---------------CGCCAAAG-------GTCATGGGTGGCTCCATGGTGCTGTGAAAATT----TCTGGGATGGGTCTAGA-----TCTCTGTGG---TTGGGACCTCCACTTCTGCTTAATGAGCTGCCTGTCCT---------------AGTCTGTGCTC------AGGCTGAGACCACCCTACTACTACAGGCAGGAGAG--GAGCGTGGGAACGTG-----AGGTCAGAGGGGTGGGGGCCTCTCAGGG------TGGAGGACGC--AGAGCCACAGGA-GGTCTGAAGTTTGGAGGCAGTTCATTCAGCTGAG--GTTGGCCTGAGAAGAGTTG s canFam1.chr18 30272429 307 - 66173745 -GTTTGGGGT--------------TGAGGTGACGTGGGAGAG------GGTGAGATGT--------------------GGGGTCGGTGGGGCCAGAACACCACAGGGCTCTGGCCAGGCCTG---GTTTGTGATTGAGAGTGGTAGTCTCTGGGGTTGGGCTCAGGCCTTTCTCTTGAGTGTGTGGGGGATCCCCCCCCACT-------CTGTTCAAC--------ACGCCTGAGGCTCTCCACTAGGTCAGGGGTAGGGGCT-CCCCGGTCCT-------GTGGATCTGGGTAGTGAGAGGTGGGCCCAGG-----------------GCTGCAGGAGGCCCCAGTGGACATTAGGGTCCAGGGGGTGGAG--------------------------------GTGGGCCTCAGAGAGACTG a score=32754.0 s hg17.chr17_random 215554 308 + 2618010 AGGAACATAGAGCTGGCCATGTTGGGGCCAGGT-------------CTCAGCAGGAAGTGAGGAATGGGACAGGCTTGAGGTACATCTTCCATCAGTAGCCAGGATAGCAAGGAGAGGTTGAAGGCCCTGGGGGAGATGGTCCCAGGACATATTACAATGGACACAGGAGGTTGGGACACCTG---GAGTCACCAAACAAAACCATGCCAAGAGAGACCATGAGTAGGGGTGTCCCAGTCCAGCCCTCTGACTGAGCTGCATTGTTCAAATCCAAAGGGCCCCTGCTGCCACCTAGTGGCTGATGGCATCCACA---TGACCCTGGG s panTro1.chr19_random 2271819 307 + 57627672 AGGAACATAGAGCTGGCCATGTTGGGGCCAGGT-------------CTCAGCAGGAAGTGAGGAATGGGACAGGCTTGAGGTACATCTTCCATCAGTAGCCAGGATAGCAAGGAGAGGTTGAAGGCCCTGGGGGAGATGGTCCCAGGACATATTACAATGGACACAGGAGGTTGGGACACCTG---GAGCCACCAAACAAAACCATGCCAAGAGAGACCATGAGTAGGGGTGTCCCAGTCCAGCCCTCTGACTGAGCTGCATTGTTCAAATCCAAAGGG-CCCTGCTGCCACCTCGTGGCTGATGGCATCCACA---TGCCCCTGGG s canFam1.chr18 30272736 257 - 66173745 -------AGGTGCCCCCCACCCCGAGGCCTGGTGGGATTATCCCACCACCACAGGAAGCGAGGAGGGGCCACAGTCTGAGACACAGCTTCCCACCCCGGCAAGGTCAGCCCTGGGAAGTCTAGG----TGGTGGCGCAGATGTTAGCACAGA--GCCGGGGA---GGGGGGTTGAGACACCTGCTTGTGTCCCCAGGTGA---CCTGC---------CCAGGAGCAG-------CCAGTCCTGTC-----------------------------------CCCTGCTGCCATCTGGTGGCCAGAGGTGTCCTCAGGGTGCTCCTGGG a score=24614.0 s hg17.chr17_random 215862 278 + 2618010 CCACACGCGTTTAGGGTCTCTGTGAAGACCAAGATCCTTGTTACATTGAACGACTCCTAAATGAGCAGAGATTTCCACCTATTCGAAACAATCACATAAAATCCCATCCTGGAAAAAGCCTGGGGGATGGCACtaaggctagggatagggtgggatgaagattatagttacagtaaggggtttagggttagggatcaatgttggttaggagtcagggatacagtagggtcaccggtaagggttaggggttaggggtaggggttagggttagggttagg s panTro1.chr19_random 2272126 271 + 57627672 CCACACGCGTTTAGGGTCTCTGTGAAGACCAAGATCCTTGTTACATTGAACGACTCCTAAATGAGCAGAGATTTCCACCTATTCGAAACAATCACATAAAATCCCATCCTGGAAAAAGCCTGGGGGATGGCACtaaggctagggatagggtgggatgaagattatggttacagtaaggggtttagggttagggatcaacgttggttaggagtcagggatacagtagggtcactggtaa-------gggttagggttaggggttagggttagggttagg a score=101850.0 s hg17.chr17_random 216271 1123 + 2618010 TTTGGGGTGGCGTATTTTGGTCTTATATGCTGTGttccactggcaatgaaaagagttcttgtttttccttcagcaatttgtcatttttaaaagagtttagcaattctaacagatatagaccagctgtgctatctcattgtggttttcaattgtaaccacattgtggtttcaatgtgtttacttgccatctgtagatcttctttggtgaggtgtctgttcagatgtgtgtgcatttttagttgggctgtttaacttattgtttagttttaataattttttatatattttgaagacaaattctttctcagatgtgtattttgcaaatattttcttcaatatgtggcttgtctttttgttctcttaacaaggtctcttccagagtataaactttaaatattaagaaatccacactgtcacttcttttgtgtatatctaccttttgtgtcatttgttaaaattcattaccaaacccaaaggcagatagcttttcttctattgtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaagttttcgtctatatccatatcatttcttatggtttccaattaatcgttccctcactatttttgggaaagacACAGGATAGTGGGCTTtgttagagtagataggtagctagacatgaacaggagggggcctcctggaaaagggaaagtctgggaaggctcacctggagggaccaccaaaaanttcacatattagTAGCATCTCTAGTGCTGGAGTGGATGGGCACTTGTCAATTGTGGGTaggagggaaaagaggtacctatgcagaaagaaacactctagaactcctctgaagatgccccaatcattcactctgcaataaaaatgtcagaatattgctagctacatgctgat---aaggccaaaggggacattcttaagagaaacctggcaccataagtacagattagggcagagaaggacattcaaaagaggcaggcgcagtaggtacaaacgtgatcgctgtcagcgtgcctgggatggcgggatggaggctgctgccagagtggattcgtattgatcaccacacatgtacctcaaccaacagtgaggag s panTro1.chr19_random 2272398 1125 + 57627672 TTTGGGGTGGTGTATTTTGGTCTTATACGCTGTGttccactggcaatgaaaagagttcttgtttttcctccagcaatttgtcatttttaaaagagtttagcaattctaacagatatagaccagctgtgctatctcattgtggttttcaattgtaaccacattgtggtttcaatgtgtttacttgccatctgtagatcttctttggtgaggtgtctgttcagatgtgtgtgcatttttagttgggctgtttaacttattgtttagttttaataattttttatatattttgaagacaagttctttctcagatgtgtattttgcaaatattttcttcaatatgtggcttgtctttttgttctcttaacaaggtgtcttccagagtataaactttaaatattaagaaatccacactgtcatttcttttgtgtatatctaccttttgtgtcatttgttaaaattcattaccaaacccaaaggcagatagcttttcttctattgtttcttctagaaattgtatagttttgcatttttagtgtaaggatgattttgagtgattatttgtgtaagttgtaaagttttcatctatatccatatcatttcttatggtttccaattaatcggtccctcactatttttgggaaagacACAGGATAGTGGGCTTtgttagagtagataggtagctagacatgaacaggaggggccctcctggaaaagggaaagtctgggaaggctcacctggagggacccccaaaaa-tgcacatattagTAGCATCTCCAGTGCTGGAGTGGATGGGCACTTGTCAATtgtgggtaggagggagaagaggtacctatgcagaaagaaacaccctagaactcctctgaagatgccccaatcattcactctgcaataaaaatgtcagaatattgctagctacatgctgataagaaggccaaaggggagattcttaagagaaacctggcaccataagtacagattagggcagagaaggacattcaaaagaggcaggcgcagtaggtacaaacgtgatcgctgtcagcgtgcctgggatggtgggaaggaggctggtgctaaagtggattcgtattgatcaccacacatgtacctcaaccaacagtgaggAG a score=137580.0 s hg17.chr17_random 217394 1564 + 2618010 gtcccacaagcctaagtggggcaagttggggagctaaggcagtagcaggaaaaccagacaaagaaaacaggtggagacttgagacagaggcaggaatgtgaagaaatccaaaataaaattccctgcacaggactcttaggctgttttaatgcacgctcagcccactcctccctatttttctacaataaactctttacactgtgtttcttttcaatgaagttatctgccatctttgtactgcctcttggtgaaaatgtttcttccaagttaaacaagaactgggacatcagctctccccagtaatagctccgtttcagtttgaatttacagaactgatggggcttaataactggcgctctgactttagtggtgcaggaggccgtcacaccgggaccaagagtgccctgcctagtccccatctgcccgcaggtggcgtgctgccacgacaccgacagcaatagggtccggcagtgtccccagctgccagcagggggcgtacgacgactacactgtgagcaagagggccctgcagtgtcctcagctgccagcaggcggcgtacgggcaccacaccatgagcaagaggaccatgcagtgccctggttgccagcaggggtcgtgctgccactacactgtgagcaagaggatcctgtcgtgcccccagcggccagaagagggcgtgccccgactacactgcaagcaagagggcctggcagngtccccatctgccagcaggcgggcgtgcggccactacactgtgagcaagagggccctgcaacgtccctagctgcctgcaggcggcgtgccgccactatattgcgagcaagagagccctgcagtgccccggcgccagc-agggggcgctggccaccactgtaagcaagagggccctgcagttgccctagtcgctagcagggggcgcactgggacagcaccgcgggcaagcgggtcctgtagtgcccggctgcaagcagggggcgcccgagcccggctttttggattactgaggttcaacccgtctctgcgccgcgcccccggggacgtgagtctgtgcgcctacaacgctccacccccgcgctctcatcccggtggcgcgtgactctgcgtntgcaccacccaccntccccccaaacccacagcctaacgacgtgcgtctctgcgcctgcgccgcgcctccccccg-ccccccaggggacgcgccactgtgcgccggcgcccgcgcgccgcgcctctgtgcgcctgcgccggcgcgccgcgtctctgtcaatttagaaagcttattttgcccagattaaggac-acgaccatgacacagcctcaggaggtcctgacgacgtgtgtccaaggtggccagggtagagcttgcttttgtacattttagggatacatgagacgtgtaagat---gtacagtcatttggcccagtaaggcgggacaactggaagcaggaagtgggggtgcttccaggtcagaagtaggttagagacaaaaggttgcattcttttgaatccttcatcagccttccactgaatacacaatttagtctggctcaatgaatctgcatttttacat s panTro1.chr9 136410327 1540 - 136640551 gtcccacaagcctaagtggggcaagttggggagctaaggcagtagcaggaaaaccagacaaagaaaacaggtggagacttgagacagaggcaggaatgtgaagaaatccaaaataaaattccctgcacaggactcttaggctgttttaatgcacgctcagcccactcctccctatttttctacaataagctctttacactgtatttcttttcaatgaagttatctgccatctttgtactgcctcttagtgaaaatgtttcttcgaagttaaacaagaactgggacatcagctctccccagtaatagctccgtttcagtttgaatttacagaactgatgggacttaataactgacgctctgactttagtggtgcaggaggccgtcacaccgggaccaagagggccctgcctagtccccatctg-ccgcaggtggcgtgctgccacgacactgacagcaatagggtccggcagtgtccccagctgccagcagggggcgtacgacgactacactgtgagcaagaaggccctgcagtgtcctcagctgccagcaggtggcgtacgggcaccacaccatgagcaagaggaccctgcagtgccctggttgccagcaggggtcgtgctgccactacactgtgagcaagcggatcctgtcgtgcccccagcggccagaagagggcgtgccccgactacactgcaagcaagagggcccggcagtgtccccatctgccagcaggcgggcgtgctgccactacactgtgagcaagagggcccggcaacgtccctagctgcctgcaggcggcgtgccgccactataaggggagcaagagagccctgcagtgccccggcgccagctagggggcgctggccaccactgtaagcaagagggccctgcagttgccctagtcgctagaagggggcgcactgggacagcaccgcgggcaagcgggtcctgtagtgcccggctgcaagcagggggcgcccgagcccggcttttcggattactgaggttcaacccgtctctgcgccgcgcccctggggacgtgcgtctctgcgcctacaacgctccacccccgcgctctcgtccccttggcgtgtgactctgcgtctgcaccacccacc-tccccccaaacccacagcccaacgacgtgcgtctctgcgcctgcgccgcgcctctccccgcccccccaggggacgcg----------------------------gcctctgtgcgccggcgccggcgcgccgcgtctcagtcaatttagaaagcttattttgccaagattaaggacaacgcccatgacacagcctcaggaggtcctgacgacgtgtgtccaaggtggccagggtagagcttgcttttgtacattttagggatacatgagacgtgtaagattacgtacagtcatttggcccagtaaggcgggacaactggaagcaggaagtgggggtgcttccaggtcagaagtaggttagagacaaaaggttgcattcttttgaatccttcatcagccttccactgaatacacaatttagtctggctcaatgaatctgcatttttacat a score=146881.0 s hg17.chr17_random 218958 1653 + 2618010 aaataatagggcagaggaagcaatcagatatgcatctgtctcaggtgagggatgactttgagtgctgtctgtcctttgtccaaaaggaaattctttgtgggcaaattgtgagtgaggtatgtagctttttatctttgtagctatcttagttaggaatagaatgagggcaggtttgcctgacatagctcccagcttgacttttcccttggcttagtgatttgggggtcctgagatttnttttcctttcaTGGTATCAGAACAGAGAAAAGgtaatgcgttgagccatgagcttatgacaagatggctaggaaggaatttttcagctccatttttatctcatgggaccaccatcatatgtatgCAATGCACGAGTGTAAAATCACATTTAGTTAAGTCAGCTTACACTAagctatggacccagatggtcctggggcctttttccactgggagatctttaaggacctttcttagcttttctatgctaattggtatattcatagttgccttatttcagggcccattttgttaatgtgtatttttactaggaaatcacccattttttctaggtttccagtttgatgtaattatttgacttttaatttctcctctgtttttagttttgtacataattttcctatctacttttgcactcttttttccatcaacaatatttttaaaatatactttttagctttttttgaagaattgttatgtttgacaattttttatGACCTAATCATGACCGTAAATGATTTTTAATTAATTTCAGCTTAATGTCTTTTGTAGGGCACAACtgttaaaatacagaattacaacaaatgtgggtttgcagatcttaattggcttttttttgtggttctagaatcaggcagcagtccagaccaaaaatggttcagaatgatctgccnacacaacatgtgcgggttatatttatagccagaggaaaaaggtgacatacagaaaacagaagtgaggtatagaggtggctggattggttacagacctggttacagcccggatttgccttcttggaacttgttttgaacagctggctgccggccattgactgacactcggctgatgtgattggctgaaccgccgctatttgttaccatgatacattcccaagtcagattttcagtttgtttctatactaaattaggttgcgattcttcttgttcttcttcttttttcttttttgaggcggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcagcntcacagcaagctccgcctcccgggttcatgccattctcctgtcccggcctcccaagtagctgggactgcaggctgccgccaccaagccctgctaatttttttgtattttttttttttagtagagactgggtttcaccttgtaagccatgatggactcgatttcctgacctcatgagccacccgtctcggcctccc-aaagtgccgggattaca-ggcgtgagccacggcgcccgg-ccgc-gactctttacaaggactcCTCGGGAGGCTTCCAGAGcccaaatgttgtttgatgtaagaattcctcccttttggtcagcctctcaattttgagatattgatcaaaactttgggcattggtgtcactctttgttatcgttgtaagttgagttattaggactt s panTro1.chr9 136412198 1647 - 136640551 aaataatagggcagaggaagcaatcagatatgcatctgtctcaggtgagggatgactttgagtgctgtctgtcctttgtccaaaaggaaattctttgtgggcaaattgtgagtgaggtatgtagctttttatctttgtagctatcttagttaggaatagaatgagggcaggtttgcctgacatagctcccagcttgacttttcccttggcttagtgatttgggggtcctgagatttattttcctttcaTGGTATCAGAACAGAGAAAAGgtaatgcgttgagccatgagcttatgacaagatggctaggaaggaatttttcagctccatttttatctcatgggaccaccatcatatgtatgcaatGCACTAGTGTAAAATCACATTTAGTTAAGTCAGCTTACACTAAGCTATGGACCCAGATGGTCCTGGGGCCTTTTTCCACTGGGAGATCTTTAAGGACCTTTCTTAGCTTTTCTATGCTAATTGGTATATTCATAGTTGCCTTATTTCAGTGCTCATTTTGTTAATGTGTATTTTTACTAGGAAATCACCCATTTTTTCTAGGTTTCCAGTTTGATGCAATTATTTGACTTTTAATTTCTCCTCTGTTTTTAGTTTTGTACATAATTTTCCTATCTACTTTTGCACTCTTTTTTCCATCAACaatatttttaaaatataatttttaGCTTTTTTTGAAGAATT---ATGTTTGACAATTTTT-ATGACCTAATCATGACCGTAAATGATTTTTAATTAATTTCAGCTTAATGTCTTTTGTAGGGCACAACtgttaaaatacaaaattacaacaaatgtgggtttgcagatcttaattggcttttttttgtggttctagaatcaggcagcagtccagaccaaaaatggttccgaatgatctgcc-acacaacatgtgtgggttatatttatagccagagaaaaaaagtgacatacagaaaacagaagtgaggtatagaggtggctggattggttacagacctggttacagcccggatttgccttcttggaacttgttgtgaacagctggctgccggccattgactgacactcggctgatgtgattggctgaaccgccgctatttgttaccatgatacattcccaagtcaggttttcagtttgtttctatagtaaattaggttgtgattcttcttcttcttcttcttttttttttttttaggcggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcagc-tcacagcaagctccgcctcccgggttcatgccattctcctgtcccggcctcccgagtagctgggactgcaggctgccgccaccaagtcccgctaatttttttgta---tttttttttagtagagactgggtttcaccttgtaagccatgatggtctcgatttcctgacctcatgagccacccgtctcggcctcccaaaagtgccgggattacagggcgtgagccacggtgcccggcccgcggactctttacaaggactcCTTGGGAGGCTTCTAAAGCCCAAATGTTGTTTGATGTAAGAattcctccctttt-gtcagcctctcaattttgagatattgataaaaactttgggcattggtgtcactctttgttatcgttgtaagttgagttattaggactt a score=4628.0 s hg17.chr17_random 220611 39 + 2618010 ATTTGCTTTCAGTG-TGGCATTTTCAAGTTTTATTTGGTC s panTro1.chr9 136413845 39 - 136640551 ATTTGCTTTCAGTG-TGGCATTTTCAACTTTTATTTGGTC s danRer1.chrNA 163239054 37 + 390413307 ATTCACTTTTAGGGTTAGCGTACTAGGC---TATTTGGTT a score=31836.0 s hg17.chr17_random 220650 387 + 2618010 TCagtgccctctgggcaatagcagaacnnactngntgttgtgtaaggcggaaatagagcaatagaaaataacaactgattntgtntaatatcagattacttcaagttacttgttttggtaagaattaaagcag--aggggacttctttatgctgactcaggtagactggaatctcttcagggaaaaagggagctcttttgggatctatctacttccttagagtttcagcttcgttgtgtgtcattcagcgtgagtgtctccattctggttttgcctgctcagtgtggcctagtgcgggagtggtgaccgaaacaatgacctcccgtagtttgttccacaGttctccccttttgattgggttcctgcctaggtgagggtgtgactaaaac s panTro1.chr9 136413884 383 - 136640551 TCagtgccctctgggcaatagcagaac--act--gtgttgtgtaaggcggaaatagagcaatagaaaataacaactgatt-tgt-taatatcagattacttcaagttacttgttttggtaagaattaaagcaggcaggggacttctttatgctgactcaggtagactggagtctcttcagggaaaaagggagctcttttgggatctatctgcttccttaaagtttcagcttcgttgtgtgtcattcagcgtgagtgtctccattctggttttgcctgctcagtgtggcctaatgcaggagttgtgaccaaaacaatgacctcccgtaatttgttcaacaGttctccccttttggttaggttcctacctaggtgagggtgtgactaaaaa a score=1003.0 s hg17.chr17_random 221150 312 + 2618010 GTATTCTCAGTGACTATCATTTTAGGGTTCCGGTCTTAGGGCATTAGCAC-TATTCTCAGTGACTATCATTTTAGGGTTCCGGTCTTAGGGCA-TTAGCAGTATTCTCAGTGACTATCATTTTAGGGTTCCGGTCTTAGGGCATTA-GCGGTATTCTCAGTGACTATCATTTTAGGGTTCCGGTcttagggcattagcactattctcagtaactatcattttagggttccggtcttagggcattaGCACTATTCTCAGTAACTATCATTTTAGGGTTCC-GGTCTTAGGGCATTA-GCAGTATTCTCAGTAACTATC s danRer1.chrNA 163239091 228 + 390413307 GTGTACTAATTGATTCAC-TTTTAGTGTTAGGGTACTAGGCTACTAGTTCATGTACTAATTGATTTCACTTTTAGGGTTAGGGTACTAGGCCATTTGGTTGTGTTCTAATTGATTCAC-TTTTAGAGTTAGGGTACTAGGCTACTAGGTTGTGTACAGACTGATT-TACTTTTAGGGCTCGG--------------------------------------------------------------------------------------TTTAGAGCACTGGGTGCTAGGGTACTAGGTTGTGTACTAATCAATTAAC a score=2565.0 s hg17.chr17_random 221463 113 + 2618010 TTTTAGGGTTCCGGTCTTAGGGCATTAGCAC-TATTCTCAGTAACTATCATTTTAGGGTTCCGGTCTTAGGGCA-TTAGCAGTATTCTCAGTGACTATCATTTTAGGGTTCCAGT s danRer1.chrNA 163239368 114 + 390413307 TTTTAGGGTTAGGGTACTAGGCTACTAGTTCATGTACTAATTGATTTCACTTTTAGGGTTAGGGTACTAGGCTATTTGGTTGTGTTCTAATTGATTCAC-TTTTAGAGTTAGGGT a score=2083.0 s hg17.chr17_random 221576 13 + 2618010 CTTAGGGCATTAG s panTro1.chr9 136414267 13 - 136640551 cttagggcattag s danRer1.chrNA 163239482 13 + 390413307 ACTAGGCTACTAG a score=27125.0 s hg17.chr17_random 221589 294 + 2618010 CACTATTCTCAGTAACTATCATTTTAGGTTTCCGGTCTCAACACATCATTTAAGAAGTCAGTAAAGCTTTCTTCTACTGTGACAGCATATTTAATACtgagaaagaaaagaaaatttttatcttgcgaatgtgagcttcctctaaattatcaggtccagagaggcgtgggaatgaggcagcagtcacgtcccatttcccgcttagctaagtaatcatatcttgaagctgcttgctatgtagactagactgactgtcatcagctatagattaacctaagagtgtcTTTGAATATT s panTro1.chr9 136414280 294 - 136640551 cactattctcagtaactatcattttaggtttccggtctcaacacatcatttaAGAAGTCAGTAAAGCTTTCTTCTATTGTGACAGCGTATTTAATACtgagaaagaaaagaaaatttttatcttgcaaatgtgagcttcctctaaattatcaggtccagagaggcgtgggaatgaggcagcagtcacgtcccatttcccgcttagctaaataatcatatcttgaagccgcttgctatgtagactagactgactgtcatcagctatagattaacctaagagtgtcTTTGAATATT a score=62173.0 s hg17.chr17_random 221883 487 + 2618010 TTTTCCAGTGGCAAATATTTGCTTCTGTTGTATCGTAGCTGAAAGGAATGCTGGGAAACAAAATAAAGACAAGCATTCATTAGAATAAGTGATCCAGTCACAATGAATCAATTTGAACTTTTTTTTTTTTC-ACAAAGTCATACTTTGAAAATGTCCAGCC---ATAAATTGAAATAGTCTCCAAAATGTGAATTTTTTTCCCTGGT--TCTAAGATGACCAGCTTT---CTTAGAGAGTGAACTACACC--------ATAAGAAAA------------ATGATATG-ACCATGTTTACACATATATG---TTATCTTAACATAAAACATGTAAAAGGGGCATTTCTTTGAAAGTATATATTAGTCTGTATAATTTACTTTGCAGTATCATGAATGCTCTTATTT-------------TTAAAAGTAGGAGTAGTTACTGTCAATTACTAAT--TTTTAGTACAAATAATTTAGCAG------ATATCTGAAAAAATTACAAtttttaaatagaggttttattttaaattagttttagatt s panTro1.chr9 136414574 488 - 136640551 TTTTCCAGTGGCAAATATTTGCTTCTGTTGTATCGTAGCTGAAAGGAATGCTGGGAAACAAAATAAAGGCAAGCATTCATTAGAATAAGTGATCCAGTCACAATGAATCAATTTGAACTTTTTTTTTTTTCCACAAAGTCATACTTTGAAAACGTCCAGCC---GTAAATTGAAATAGTCTCCAAAATGTGAATTTTTTCCCCTGGT--TCTAAGATGACCAGCTTT---CTTAGAGAGTGAACTACACC--------ATAAGAAAA------------ATGATATG-ACCATGTTTACACATATATG---TTATCTTAACATAAAACATGTAAAAGGGGCATTTCTTTGAAAGTATATATTGGTCTGTATAATTTACTTTGCAGTATCATGAATGCTCTTATTT-------------TTAAAAGTAGGAGTAGTTACTGTCAATTACTAAT--TTTTAGTACAAATAATTTAGCAG------ATATCTGAAAAAATTACAAtttttaaatagaggttttattttaaattagttttagatt s canFam1.chr6 26349298 509 + 79106041 TTTTTAAATTTAAAATATTTGAT--TGTTCAAT--TAGCTAAAAAGGATAAATGGGAAAAAGATAAAAACAAGGCTTCCTTAGAACAAGTGAACAAGCCACAAGGAATCA--TTGGCCATTT----------GTACAGT----ATTTCAACACATTCAGCCAGTGTGAAATATCACATCCTCTAAAATCTGAATATTT----CTGATGATCTAGGATGACCTACTTTAAACAGAGCTAATTGATGACACTCCTTCAAGATCAGAAAACCATATATTTACATACTACATACCATGTTTTC-TATATATGTTATTATCCTAACATAAAATATGTGTTACAG--ATTTCTGTGAAA-TATATTTTATGGTGT---ATTCAGTTTTCTGTGGCATGTATGCTATTATTTAGATAAAACCATAGTAAGAACAGTAAGAATCACTGTCAATTATTAATAATCCTAGTAAAGCTAATTATGCAACCACATGTGTCAGAAAAAATGA-AGTTATCATTGATTAGCTTTTATTCAAAACAGGTTTAGACT a score=64349.0 s hg17.chr17_random 222370 725 + 2618010 catacagaaattgggaagaaaatgcagatttcccatgtagacgcaacctagtttcccctctttttaacatatcaacatgtatcagataggtttaacatc-tttttttttttttcttttttccagac-----cagttttttttttttttcaaccaggctggagtgcagtggcatgatctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggtattacaggcgcctgccatcgtgcccggctaatttttgtatttttagtagagatgaggtttcaccacgttggccaggctggtctcgaactcctgatctcaggtgatctgcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccactcctgaccaacatcttacatcatttcttgtcatacttaatgactggatattactatattattaaataagctcacatcttatttggtttcccttagttctgcctttttctctcccaggatcctatctaggatcccataggacatttagtcatcatgtcaggctcttcttggctgtgacagtctctcagactttacttctgaggacctggaacagtgttaggaggattggtcaggtattgtgtagaatgtcctccattgtggtttacttggggtttttctcataatcagcctgggtttaggggtttgggggaagcagagcagatgtgtagt s panTro1.chr9 136415062 716 - 136640551 catacagaaattgggaagaaaatgcagatttcccatgtagacgcaacctagtttcccctcttttaaacatatcaacatgtatcagataggtttaacatctttttttttttttttttttttccagacagagtc---------------tcaaccaggctggagtgcagtggcatgatctcggctcactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctggtattacaggcgcctgccatcatgcccggctaatttttgtatttttagtagagatgaggtttcaccacattggccaggctggtcttgaactcctgatctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccagtcctgaccaacatcttacatcatttcttgtcatacttaatgactggatattactatgttattaaataagctcacatcttatttggtttcccttagttctgcctttttctctcccaggatcctatctaggatcccataggacatttagtcatcatgtcaggctcttcttggctgtggcagtctctcagactttacttctgaggacctggaacagtgttaggaggattggtcaggtattgtgtagaatgtcctccattgtggtttacttggggtttttctcataatcagcctgggtttaggggtttgggggaagcagagcaGATGTGTAGT a score=14328.0 s hg17.chr17_random 231467 448 + 2618010 ttccattgcatggttgtacttcaaattgattatgcattcagctattgaagaacgttctgattacttcaag-ttttggccatgatgagtagagtggctcatatataattacatgctagtttttgtttgaacataatttttcaaagncagctgtctaaacatacacaatttaggggtgcatttgttggattgtaa-ggtaagacttgtttatctttg-ggaaaaactgtcaaactatttcccaaagtggctgtacccattcatgcattctgccattaatgaatggccgtacctattgttcttcaacttccaa---ttgttactgttgagcttttttaagagtcccacagttgtactaggtgtgcagtgatatctcagcattattttaatttgcagtctcctaatgaga---tatattgagcatccttttgtgtgattatgtgctatctgtatattttct s canFam1.chrX 126847995 438 + 126913094 tctcttcaCatggatgcactccagtttgcttatggattcatctgttgaagtaaatcctggtttctgtaagatcttaaccactagataaagagctgct-gtgaataactgcatgtgagattttgtttggaaatagcctttcaaag-cagttgtctaaatac--------cagaagtatgattgttggatcctaaaggtgagacttatttagctttgcaaaaaaactgccagactgtctcctgaagtggc------catatgtgcattcccccagcg-tgaaggacaggtgctgtcatttctcaccttccagcagttggtatttttg-ttttttgtagtagcttaggatttctaataggtgtgcagcgctacctcagtgttgtttaaatttgtaatctcctaataataaaggatgctgagcata-ttttgtgtgcctgtgtattatctgtacatcttct a score=539.0 s hg17.chr17_random 232267 59 + 2618010 tcagatatttacccagttttatgtgggtt--tttagttttcttagtgttcgtttgaagagt s canFam1.chrX 126848443 56 + 126913094 tcagatataaacatgttatcgattaggttatttctgttttcctga-----attatgagagt a score=14529.0 s hg17.chr17_random 232326 128 + 2618010 tctttgtgtat-tttcaataca---gtttttaaaatcatgtttgtattttgtaaatatcttctcacagt--gtgtcttgtctttttgttctctgaatagggtttttc--atagtagaaaatttagttttataaagt s panTro1.chrX 160125032 130 + 160174553 tctttttatat-ttttaatacaattgttttta---ccagatatgtattttgtaaatactttctcccagtctgtgtcttgtcttt--gttctctgaataggctctttctcagagttgaaaatttagttttataaagt s canFam1.chrX 126848499 128 + 126913094 --tttatgtatattttaatacaaa-tccttta---tca--catgtgttttccaagtaatttctcccgatgtggggcttgtgtttcagttttctgaaaaaggtctttcatagagtaaaagttttaattttaggaagt a score=554.0 s hg17.chr17_random 232454 13 + 2618010 ctgt--tctcagtat s panTro1.chrX 160125162 15 + 160174553 ctgtgttatcagtat a score=7880.0 s hg17.chr17_random 232467 102 + 2618010 tttcacgaatt------------ggcacttgatgctgtgtgttaaaactcaacaccan-----gatcgaatgtctcttaggttttc-----------ttttagattatttatagttttgcatttgaagtt s panTro1.chrX 160125177 107 + 160174553 ttt------ttcttttgtgatgtggcttttggtattatgtgttaaacctcagcaccaa------atccaaggttgcacaggctttc-----------ttctagaatgtttatagttttgcatttcaaatt s canFam1.chrX 126854978 116 + 126913094 ttttgtggatt------------ggcttatgatgt--tgtgttaaaactcttcacctgtgttataaccaaggtcacgtatgttttcctttgttttctttttgatattttgatagttttgtgttttaaatt a score=511.0 s hg17.chr17_random 232569 16 + 2618010 gtagtctctggactat s panTro1.chrX 160125284 16 + 160174553 tcagcctatggatgat a score=10084.0 s hg17.chr17_random 232585 136 + 2618010 tttgagtaggtttttgtgt----tttaatttg--tgtataga-gtcatt----tcattctatatggcttccaaataattcttccatcaccatttatgggaaggaTATGGATATAGTGGCCTTTATTTCGGTTTGAATTTCCAAAATT s panTro1.chrX 160125300 121 + 160174553 tgtgagtgaatttttgcataa-ttttagtttgcatgta-------cattattttcattccatatggtttctaaataattgttccatcactatttttgaaaagTACACGGG-ATAGTG-----------------AATTTCCAAAATA s canFam1.chrX 126855270 137 + 126913094 TTTGAGTGAATTTTGGTATAAGTTGTAAAGTTCATATCTGAATTTTATT----TTATTATGTATGGTTTCCAAATAATTATTCCATCTCCA-----GAAGATGTCAGGGG-ATATTAGGCTCAATTTCAGTTTGAATTTCCAAAATT a score=17570.0 s hg17.chr17_random 232721 420 + 2618010 ATGACACTGAATAAACTGAATATTGAATTTTATAGGTATTTCAGGACAGCCAGGAGGGGGCGCACATCCGCCGAGAAACTGTGAGCAAGAGCGTC-TGTGCTGAACCATGGC-GCCACCAGAGGGCGCGCGATCCCGCCGC----AACCAACTTCCCGCTGA-GGTGCCAGAAGCAGCGAG----GAGCTTCGACTTCCTCAGGGC---AGCACGGGGGTCGCGTTAACTTGGTGTTCTTCATTGGTGAGTAAAAAGCTCCTGTCCACGGCCCTGAGTG---CCAAGGAG----TGAGTCTTTAGAGCACTCAGCAGAGGAAGAAATTCATCTAGAAAAATAAAACCCCCAAATCTCACTGT-----TTGGACTACACCCTAATATCATTGTCAACGTCCAAGACACAGTGGCTGTTAATATATATTCTTACAGTGGCCTCTAATA s panTro1.chrX 160125421 426 + 160174553 ATCGCACTGAGTAAA-TGAATGCTGAATTGTATTGATTTTTCAAGAGAGCCAAGAGAGGGCCCACGTCCACCGATAAACTGTGAGCAAGAGCGTCCTGTGCTGAGTCCTGACAGCCACCAGATGGCATGTGAACCCGCCTCTTCTGACCATCTCCCCTCAGATGGTG---GGAGCAGGGAGACAAGAACTTCATTTTCCTCAAGGCTCCAGGACGGAGATC---TAAACTTGATACTGTTCAGTGGTGAATTAAAAGCTTCTGTCCACAACTCGGAGTGTAGC---GGAGATTCTGA---TTCAGAGGATTCTGCACAGGAAGGG-TTCATGTAGAAAAATATAACCCCAAAATCCCACTGTTGCCATTG-----CACCCTGAGATCATTCTCAACGTCCAAGACATAGTGGCTA-CAATATATATTCACACAATGGCCTCTAGTA a score=852.0 s hg17.chr17_random 233741 39 + 2618010 CTACTACGTGGACTCTGTTGACATTGAGACTTTTTTAAG s canFam1.chrX 126857543 39 + 126913094 CTTCCAGGTGCCTCTTGCTAACATGTGGCCTCCTATAAG a score=35945.0 s hg17.chr17_random 233780 293 + 2618010 -------GGTTTTACAGCTTTGGCTGAACTAT---------------AGCCTCTGCAATGGATTTTGATGATGTGTCTGCTTTCCTGGCATGGTATTGACATGGTTGTTTTAAAAAGTAACttattttccaataatgtcatatttctaggcaacttccagtagtagtacaaagtacaacttgtttc--ttcccttagattccccaacagttattgctgtaccagatttgcAGTGTCCCACAaaatactccggtatattgtactgaaaacatggacactctcccag--gtaactaccacataacccctagatcaggaaat s panTro1.chrX 160125936 293 + 160174553 -------GGTTTCACAGCTTTGGCTGAAATGG---------------AGCCTCTATAATGAAGTTTGATGTCATCTCTACTTTCCTGGTATGGTATTGATATGGTTGTTTTATAAAGTAAtttactttccagtaaattcatacttataggaaacatgcaatggcagtacaaaatac--cttttatcctttctctcagattccccaGTGGTCACTCCAGTACCAGATTTGCAACTTCACACAaaatactctactgtattttactcaaagcagggacactctcccag--gtaaccaccacataacctccaaatcaggaaat s canFam1.chrX 126857582 315 + 126913094 GGCAAGTGGCCTCTCAGCTGTGGATGAGCTCGGTGTGGGTAGGGTTTGGCCTCCATCACAAAGTGTGATATCATCTCTGCCTCTCTGGCCAGGTGCTGACATGGTCGTTTGGAAGAGTAACTTACTCTGCAGAGatttcaaacctgcaataaacttgtcagagcagcacaaa-tacccctcatgta--aaccctcagactccccaactatcatctctttaccacatttgcCACTTCACAAGGAATAATTCAGTGTGTTTTAGTCTAATCAAGGACACTTTCCCAGAAGGAAGCACCACATAACC-CTATATGAGGAAAT a score=1209.0 s hg17.chr17_random 234073 24 + 2618010 cagcattgttcctacatgataatt s panTro1.chrX 160126229 24 + 160174553 caatatGGTTTCTACCTGACAATC a score=2947.0 s hg17.chr17_random 234170 31 + 2618010 GGATCCagttttcttttcctggaactgttcc s panTro1.chrX 160126318 31 + 160174553 GGATCCAGTTTTCTTTTCCTGGAACTGTTCC a score=84202.0 s hg17.chr17_random 235635 950 + 2618010 TTCACTGCCTCAAACTTTTGTTGACTTTGAAAGCTTCTTTCAGTCTAGTTTTATCaacagagctagtatttcatgaggttctactacataccaggttccagaaagctaaatgccttttgtttgttat-tattctctaaatacaaatcacaactctctcctcattactcacacaacaaaatttagctgcgggagattgagtgactttcccagggtcacatagctactaagagcagagtcGTGTTTAGATTCATGTGGGAATATTGAACACAGAAATGAACCAGTGGAAACATCCTACGTTCCANAAANCCTACTCAAGCTATTTGTTCTTATTTTAAGGAAAATCTTTATGCTAATTTTAAACTCCAAATACTTACGAATGGCAGAGATCTACAGATTTGATTCTGATGTAAGAAATGATGGTCACCAGCTGGTTACTGCTACCACCCCACAACCCTGAGCATACTGGACGAATGTCTAAGCCTTGTGGTTAGTGGGGACAATGCTGGTGGAGTCTGAAGTTGTCATGCAGTGACTCATGCAAGCTTAGGCAGATTTGGTGATATATgacacagagatgcaaagaaatgttgtagctgacacacacaggctggctctgggagatgcagaaggagcacgtcacccaaaatagagccagacagacatccttaaggaaggagcaaaggggctgcatcttaaagaatgtagaaaggatttgtcatgagagatggggcaggaagttcttgagaggcagagggagagcatgagaatgttgggaagggaggagagattcttgcacatctgggaagctgacaatccatcagcatggccagaaggaaaataaggaggaggagcagaaatagatgaggctggaTATAGAAGCAGGGCTGAAGCTGTGTCAATTGTGGTAAAGAGTTGTGATTCTATCCAGAACGCAATAGGTAGCATTCTAA s panTro1.chrUn_random 236151165 949 - 240967748 TTCACTGCCTCAAACTGTTGTTGACTTTGAAAGCTTCTTTCAGTCTAGTTTTATCAACAGAGCTAGTATTTCATGAGGTTCTACTACATACCGGGTTCCAGAAAGCTAAATACCTTTTGTTTGTTATATATTCActacataaaaatcacaactctctcctcattactcacacaacaaaatttagctgagggagattgagtgactttcccagggtcacacagctactaagagcagagtcgtgtttagaTTCATGTGGGAATACTGAACACAGAAATGAACCAGTGGAAACATCCTATGTTCCA-AAAGCCTACTCAAGCCATTTGTTCTTATTTTAAGGAAAATCTTTATGCTAATTTTAAACTCCAAATACTTATGAATGGCAGAGATCTACAGATTTGATTCTGATGTAAGAAATGATGGTCACCAGCTGGTTACTGCTACCACCCCACAACACCGAGCATACTGGACGAATGTCTAAGCCTTGTGGTTAGTGGGGACAATGCTGGTGGAGTCTGAAGTTGTCATGCAGTGACTCATGCAAGCTTAGGCAGATTTGGTGATATATGACACAGAGATGCAAAGAAATGTTGTAGCTGACACACACAGGCTGGCTCTGGGAGATGCAGAAGGAGCACGTCACCCAAAATAGAGCCAGAGAGACATCCTTAAGGAAGGAGCAAAGGGGCTGCATCTTAAAGAATGTAGAAAGGATTTGTCATGAGAGATGGGGCAGGAAGTTCTTGAGAGGCAGAGGGAGAGCATGAGAATGTTGGGAAGGGAGGAGAGATTCTCACACATCTGGGAAGCTGACAATCCATCAGCATTGTCAGAAGGAAAATAAGGAGGAGGAGCAGAAATAGATGAGG-GGGATATAGAAGCAGGGCTGAAGCTGTGGTGATTGTGGTTAAGAGTTGTGATTCTATCCAGAAGGCAATAGGTAGCATTCTAA a score=32034.0 s hg17.chr17_random 236585 395 + 2618010 ACAGAGATCTTTTAAAAcaagagtcagcaag-tattttctgcaaggggctaaatgttaa-atattttaagttttccaagccatatggtctctctctcaatgactcagctcttccattataccatgaaagtagccagagacattatgtaacacatgtat-tggttgtgtcccattacaactttacttacaaacgcagactgtgtcagacatggtccatgcatggtagtttgccACACTCTGTTTTAGAAAGCTCAG--GTTTATGATGTGATGGAGAATGCCCACAAGAGCTCTTGTTTTAAACGGTAGAGTGAAC-ATACACTGGAATTCTATCCTGCTTGACACAAGCTCTTGATAGCAAAAGGTAGAAAagatagatggtaaa----------------------tagatagatagatgat s panTro1.chrUn_random 236152430 423 - 240967748 ACAGAGATCTTTTAAAAcaagagtcagcaaaatattttctgcaaagggctaaatgttaatatattttaaattttccaagccatatggtctctctctcaatgactcagctcttccattataccatgaaagtagccagagacattatataacacatgtatgtggctatgtcccattacaactttacttacaaacgcagactgtgtcagacatagtctatgcatggtagtttgccacacctTGTTTTAGAAAGCTCAGTAGTTTATGATGTGATGGAGAATGCCTACAAGAGTTCTTGTTTTAAATGGTAGAGTGAACCATACACTGGAATTCTATCCTGCTTGACCCAAGCTCTTGATAGCAAAAGGTAGAAAagatagatagtaaacagatagatagatgataggcagtagatagatagatgat a score=47765.0 s hg17.chr17_random 236980 565 + 2618010 agataAAGAAAATACATAGCTGTNTCCAGAAAACAGAAATGGATAACTTCATGAACCAAAAGCAGAGTAATATACTTTAGNAAAGGAAGCAGGCCGGAAAACCCACAGTTGCAAAACAAATAGAATTTCCAACTGCCTCTTGTAGCCCCTTCCTGGAAGTAGTCACAGNCCCGGGGTGTTCAACTTCTTCCTCTGTTTTTTGTTTNGTTTGTTGTTTGCTTTTCTGTGGGGTTTTTGTTGTNNNTGTTGTTTGCTTTTAAAAAAAAAATTCCCTTTCCCTGCTTTTTTGTCACAGCAGCCTTTGTCACTTCAAACACCGCAAGTGTTCTTTAAAAAAAATTATATCAACCTTTCAATTCAAATGCAACATGTCTGAAACTTGGTATCTGGAGAGGTGAGTTGGACAAAGGAGCCCTTGTTACTGCACGTTTTCATTCTTCAAATTTCACCTTGCACGCAGTAACAGACAGTGCACAAAGCCACTTCCTTATGGACGGAAATTCTGAAATCCTTTTATGCCTGGCCTTTCCATCCTTCAACTTCCCCTCTCCCACGCTGTGAATGA s panTro1.chr9 136426803 557 - 136640551 AGATAAAGAAAATACATAGCTGT-TCCAGAAAACAGAAATGGATAACTTCACGAACCAAAATTCGAGTA-TATACTTTAG-AAAGGAAGCAGGCCGGAAAACGCACAGTTGCAAAACAAATAGAATTTCCAACTGCCTCTTGTAGCCCCTTCCTGGAAGTAGCCACAG-CCCAGGGTATTCGACTTCTTCCTCTGTTTTTTGTTT-GTTTGTTGTTTGCTTTTCTGTGGGGGTTTTGTTGT---TGTTGTTTGCTTTTTAAAAAAAAATTCCCTTTCCCTGCTTTTTTGTCACAGCAGCCTTTGTCACTTCAAACACCGCAAGTGTTCTTTAAAAAAAATTATATCAACCTTTCAATTAAAATGCAACATGTCTGAAACTTGGTATCTGGAGAGGTGAGTTGGACAAAAGAGCCCTTGTTACTGCACGTTTTCATTCTTCAAATTTCACCTTGCACGCAGTAACAGACAGTGCACAAAGCCACTTCCTTATGGACGGAAATTCTGAAATCCTTTTATGCCTGGCCTTTCCATCCTTCAACTTCCCCTCTCCCATGCTGTGAATGA a score=22073.0 s hg17.chr17_random 237545 140 + 2618010 TTGTATTGGACATTT-TTGTTTTAATGTCANGTGACAGGGGAACACAGGTAGCTCTAATATAGCTGTGACCCAGATGCTTCTGTTTCTAGCATGTATTTATTTTGTAGCAAACATTTACATCCATGATGTTTCACTGTCTT s panTro1.chr9 136427360 139 - 136640551 TTGTATTGGACATTT-TTGTTTTAATGTCA-GTGACAGGGGAACACAGGTAGCTCTAATATAGCTGTGACCCAGATGCTTCTGTTTCTAGCATGTATTTATTTTGCAGCAAACATTTACATCCATGATGTTTCACTGTCTT s canFam1.chr17 63877088 135 - 66886099 TTGTACTGGTGGTTTCCTGTTTTAATCTCA-GTGACACGTGAGCAAACATATTTCCAACACAGCTATGGCCTGGTTGCTTCTATTTCCAGTTTCTTTTTATTTCATAGCAAAA--TTACACC--TGACATTTT-CTTTCTT a score=47534.0 s hg17.chr17_random 237685 306 + 2618010 TTGAAAATAATTAGGCAATATCTCATCTGAGGTAGGATGTTTCTAG----GGGTTGTGTTCTGAGGGAGGAAAACTAATCTGTTC----TCTTTCCACTGCATTCTAGGAACAGTAAGAGGACCTTGTGCATGAATAA------------TTTGTTTCCACACTA---CAGAGTGGGTAATAAGCAGATTAGTAAAAACAGTTCTGCTTCACTTCAATAACAGCCTCCTCCAACTCATTTTTTCTCAACAAACTTATTTTTCCAGCAGAAGAATCCCAGACTTCTTAGAGAACCCAGTGACTTTTTGCACCTTAAATCTGTGAAATCCT s panTro1.chr9 136427499 305 - 136640551 TTGAAAATAATTAGGCAATATCTCATCTGAGGTAGGATGTTTCTAG----GGGTTGTGTTCTGAGGGAGGAAAACTAATCTGTTC----TCTTTCCACTGCATTCTAGGAACAGTAAGAGGACCTTGTGCATGAATAA------------TTTGTTTCCACACTA---CAGAGTGGGTAATAAGCAGATTAGTAAAAACAATTCTGCTTCACTTCAATAACAGCCTCCTCCAACTCATTTTTTCTCAACAAACTTATTTTTCCAGCAGAAGAATCCCAGACTTCTTAGAGAA-CCAGTGACTTTTTGCACCTTATATCTGTGAAATCCT s canFam1.chr17 63877426 311 - 66886099 TTGAAAATGAGTAAGCTACATCCCTTCAGAGATTGGGTACTCGTAGATGTGAATTGTGTTCTGAGGGAGAAAAACTAGTCTATTCATTGTCTGTCCACCGAAGTCAGGGAACAGTGAGAG--CCCCACTCACACATAACGTAGTCTGACCTTTGCTTAAACCCCAGCCCAGGATGCATAA-AAGCAGACTGCTGAGGAACATTCTGCCCCACTCCAGGGACGGCCTGCTCCAATTCGGTGTTTCT---CAAACTTTTCTTTCCAGCAGTGGAGTCCCAGACTTCTTAGAGAATCCAATAACTTT------CTCACAACC---AAAC--- a score=43387.0 s hg17.chr17_random 237991 454 + 2618010 TATGTTTTCTTCTGCTGTATCCATAGTTCAAACA----AAGATNGAGGCAAAGCTAGACGCATTCCTGAAGGAACCCAAGAAATTCCTCTCTTTCTTTCTCTGGAATGAAATGAATTCTCTAGACCACCAGTTCTAACCTTCAAAAACCAAACCTGTTTGTGAGATCTCCTTCAAATACTACTGTAGACCCCAGTGTTTATTCattaaattttttaaatatttgttttatttGGAATCCATGTATTTGTAATTTTAGTG-TTTGTATTAATATCAGGGAG-AAATGTTTAAATCTGTCTTATGCCATATGTGCCTCTGGCTTAT-TGCC-CAATTAATTGTAGTCTCAGGCTAAACTTTGGTTTCTGTCTTTA-------------------ATTTTTGTCAGAAGAAATATAACTGATCTCAAAACATCTGCTTTTATTGTAGGGGCTTGTGCTGCCGTCTCCATTCTTCTCTCTTTTCT s panTro1.chrUn_random 236153859 454 - 240967748 CATGTTTTCTTCTGCTGTATCTATAGTTC-AACA----AAGAT-GAGGCAAAGCTAGACGCATTCCTGAAGGAACCCAAGAAATTCCTCTCTTTCTCTCTCTGGAGTGAAATGAATTCTCCAGACCACTAGTTCTAACCTTCAAAACCCAAACCTGTTTGTGAGATCTCCTTCAAATACTACTGTAGACCCCAGTGTTTATTCATTAAATTTTTTAAATACTTGTTTTATTTGCAATCAAAGTATTTGTAATTTTAGTATTTTGTATTAATATAAGGGGGAAAATGTTTAAATCTGTC-TATGCCATATGTGCCTCTGGCTTATATGCCTCAATTAATTGTAGCCTCAGGCTAAACTTCCGTTTCTGTGTTTA-------------------ATTTTTGTCAGAAGAAATATAACTGATCTCAAAACATCTGCTTTTA-TGTAGGGACTCGTGCTGCCATCTCCATTCCTCTCTCCTTTTT s canFam1.chr17 63877737 367 - 66886099 TATGCTTTCTTTTGTGACACACACAATGCAAATATGTGAAGAT-AAAGTAGAGCCAG---------------------AGAAACT----------------------------------------------------CCTTCCAAGCTGAAACCCATTTGTGAGATCT-ATTCAGTTCCTACTGTAGATCCT--TTGTTATTGATTA---TTATTA---------TTTACTTGGAATCAAT---TTTATGAATT------CTAGCATTATTTTTAGTGGGCAAGTGTTCAAACCTCTC-TATGCCCTGCTTTCCTCTGAC-----TGTC-AGGTCAGTTGTAGCCTATGGCTCAGCTTTAGTTTCTCTCTTTATTACAACAGATCTGAGTGGACATTCTCCAAAGTGATCTTTAGTGACCCTAACATTCTCACCCCTC-TGTGGAGGC--------CCACATGTCTCCTCCTCCCTTTGCT a score=6675.0 s hg17.chr17_random 238445 96 + 2618010 TGCAANCNTNGGGTGGAAGTNTCTTTAATATGAACATTTCAACCACCTTCATTCTACCATGTCCACTATCAGCACATTCAAACTGATCCAGCCAAG s panTro1.chrUn_random 236154313 93 - 240967748 TGCAATC--TGGGTGTAAGT-TCTTTAATATGAACATTTCAACCACCTTCATTCTACCATGTCCACTATGAGCACATTCAAACGTATCCAGCCAAG a score=14051.0 s hg17.chr17_random 238541 89 + 2618010 GCTGTCATCTTAGGCCAGGGA-TTTTTTAGGAATC--TATTTTG-CTGTGATGCGGCTGGCACCCCTTTGACTCACTGTATCACCCCAGGGTT s panTro1.chrUn_random 236154406 90 - 240967748 GCTGTCATCTTAGGCCAGGGA-TTTTTTAGGAATC--TATTTTGACTGTGATGCGGCTGGCACCCCTTTGACTCATTGTATCACCCCAGGGTT s canFam1.chr17 63878357 91 - 66886099 GGTACCTCTCCAGGCAATGGATTTTTTTATGAGTCTTTATTTTG-CTGAGGTTCACCTGGC-CCCCTGTGACTCACTGGATCACCCCTAAGTT a score=8973.0 s hg17.chr17_random 238630 107 + 2618010 CTTTTCATTTCAGAAGCCCAAGAGGGCAGAAAAAGAAGTAGGTGAGCAATTAAACACTCTGAGTCAGGAGTGTCTCCCCTTGCGTTAAGCAATGTTGTAGAACATCG s panTro1.chrUn_random 236154496 107 - 240967748 CTTTTCATTTTGTAAGCCCAAGAGGGCAGAAAATGAAGTAGGTGAGCAATTAAACACTCTGAGTCAGGAGCATCTCCCCTTGTGTTAGGCAATGTTGTAGAACATCG a score=64475.0 s hg17.chr17_random 238749 467 + 2618010 GATGTTGGCAACCTTGGTACCATTTTGTCCACCTGATTGGAAAAGCCAGTCAATAATTTCAGGTCACTG---------TTGGCCTTAGAAGNAAGAGCCCAAAGGCAACAAGCAAAGGCGCTGGTGTCCAGTCGCCTTCTAGAA------------------------GCATTTTCACTTTCCCTTAAGGTTTCCCTTGATGAACATAGAAGTACTGTATGTAGAATTGACCCAGTGCTGCCCT-GGCAACTTTGTATATTAGGCCAAATTTA-CATTTCTTA---CCTTTATGAGAGGCACCCTGGTAG---GCTAGT-GGAGTTACACACAAAGTCTGATCTCAGCTGCACTGTCCAGAAATGCAACACggtccaatcaaataacattctctgagcctgtttctttagctgtgaaagaagaataacatacccatctaaaaaggcagcttattgtATTTGATTGGTCTTTTATTTTCTATGAAACTGTGTTTAACACAGTAATTATTT s panTro1.chr1 5994783 465 - 229575298 GATGTTGGCGACCTTGGTACCATTTTGTCCACTTGATTGGAAAAGCCAGTCAATAATCTCAGGTCACTG---------TTGGCCTTAGAAG-AAGAGCCCAAAGGCAACAAGCAAAGGCGCTGGTGTCCAGTCGCCTTCTAGAA------------------------GCATTTTCACTTTCCCTTAAGGTTTCCCTTGATGAACATAGAAGTACTGTATGTAGAATTGACCGAGTGCTGCCCT-GGCAACTTTGTATATTAGCCCAAATTTACCATTTCTTA---CCTTTATGAGAGGCACCCTGGTAG---GCTAGT-GGAGTTACACACAAAGTCTGATCTCAGCTGCACTGTCCAGAGATGCAACACggtccaatcaaataacattctctgagcccgtttctttagctgtgaaagaagaataac--acccatctAAAAAGGCAGCTTATTGTATTTGATTGGTCTTTTATTTTCTATGAAACTGTGTTTAACACAGTAATTATTT s canFam1.chr6 70603402 478 - 79106041 GGTATTGGTGACATTGGTGACTTTTTCTCCTATTGGTTGGAATAATCACCAAATGATTTCAGGTTACTAGAGTATCTCTTGGTGTTTGAGG-AAGAACC--AGGATTACA-------------GTGTCTGATTGTGTTCTATGATGCCGGGAGAGGAATGACATACACGTCTTTTAAGCTTCGGTCAGATTTTCCCTTGATTAATGTACAAA----ATACATAGAAGTTATGTATGGTTGTTCTAGGCAATGTTGTGTATTTG-CTGAATTGG-AATTTCTTGTTCTCTCTTTGAGA-GTACCATGTTAGTGTGCTGGTAAGAGTCACACTCAGAGTCTGATCTCAGCTGCACTGCTGAGTGGTGTGTCATGGTTAAGTCACAGAACACTTGCTAAGCCGATTTCTTGAGTTGTGAGAGGAAAGTGAA--AATTATTTAGAAGAGTGACCTGTAGTACTTGAATGGCATCTT------TTTGAGATTGTCTTTAATACAGTGATTATTT a score=13605.0 s hg17.chr17_random 239216 174 + 2618010 TCATTTGTGTACTACATTTGTGTTGTGTTTTTGGTTTTAGTTTTGTTTTTGAAATGGAGTCttttttttagtggttttttgttttgttttgttttgttttgtttttgagatggagtctttctattgtcacccaggctagagtgcagtggcgtgatctctgctcactgcaacctc s panTro1.chr1 5995248 168 - 229575298 TCATTTGTATACTACATTTGTGTTGTGTTTTTGGTTTTAGTTTTGTTTTTGAAATGGAGTCTTTCTTTTAGTGGttttttgttttg----ggtttgttt--gttttgagatggagtctttctgttgtcacccatgctagagtgcagtggcgtgatctccactcactgcaacctc a score=31662.0 s hg17.chr17_random 239394 419 + 2618010 tcccaggttcaagtggttctcctgcctcagcctcctgagaagctgggattacaggtgcccaccaccatgcccagctaattttta-aaatatatttttagtagagatggggttacaacatgttgctcgggctggtctcaaactactgacgtcaagtgatccacctgccttggcttcccaaagtgctgggattataggcatgagccaccgcgcctggctTGTTTTAAAATAAGGGTTTCTTGNNGNNANgngcatggtggctcacacctgtaatcccagcactttgggaggccaaggtcagtggatcancctgangtcagtagtttgagaccagcccgagcaacatgttgtaaccccatctctactaaaaatatattttaaaaattagctgggcatggtggtgggcacctgnnatcccagct s panTro1.chr1 5995516 411 - 229575298 tcccaggttcaagtgattctcctgtctcagcctcctgagaagctgggattacaggtgcccaccaccacgcccagctaatttttttaaatatatttttagtagagatggagttacaacatgttgcccaggctggtctcaaactactgacgtcaaatgatccacccgccttggctccccaaagtgctgggattataggcatgagccaccgcgcctggctTGTTTTAAAATAAGGGTTTCTTg--gcta--ggcatggtgtctcacacctgtaatcccagcactttgggaggccaaggtcagtggatca-cctgaggtcaggagtttgagaccagcctgaccaatatggagaaaccctgtctctactaaaaataca----aaaaattagccaggcgtggtggtgcgcgcctgtaatcccagct a score=6112.0 s hg17.chr17_random 240102 64 + 2618010 agtgagctgagatcgcaccattgcactccagcctgggcaacgagcaaaactctgtctcaaaata s panTro1.chr1 5995979 64 - 229575298 agtgagctgagatcgcaccattgcactccagcctgggcaacgagcaaaactctgtctcaaaata a score=11284.0 s hg17.chr17_random 240166 59 + 2618010 aaaaaaaGATTTCTTAAAATGATATTTTCAGTATTTTATAGATGATGTGTAAGCAGCAA s panTro1.chr1 5996043 59 - 229575298 aaaaaaaGATTTCTTAAAATGATATTTTCAGTATTTTATAGATGATGCGTAAGCAGCAA s canFam1.chr6 70603905 59 - 79106041 AAGTAGAGATTTTGTAAAGTGGTAGTTTTAGTAATGTATGGATGATGTTTGAGCAGAAA a score=25789.0 s hg17.chr17_random 240225 383 + 2618010 GCTTAATAGGA--------------------------------------------TGTNNCCNNNNNNTTNNNNNNNNNGNNNNNNNNTTNNNNCNNNNNNNNNNNANTTCTtttttctttttcttttncngttttttttttttttgacagagccttgctccgtcccccatgctggagtgcagtggcacgatctcggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcaggctcccgagtagctgggattacaggcgcgcgccaccatgcccagctaattttttgtatttttggtagagacagcatttcaccatgttggccaggctggtctcgaactcctgaccttaggngatctgcctgcctcggcttcccaaagtgttaggattacaggcgtcagccactgtgcctggcc s panTro1.chr1 5996102 383 - 229575298 TCTTAATAGGATGTTATCCGACACTTTGCGAGACTGGCAGCTGATTTGATCCAGATGTCTC--------------------------------------------TAATTCTTTTTTCtttttctttttctgttttttttttttttgacagagccttgctccatcccccatgctggagtgcagtggcacgatctcggctcactgcaacctccacctcccgggttcaagcgattctcctgcctcaggctcccgagtagctgggattacaggcgcatgccaccatgcccagctaattttttgtatttttggtagagacagcgtttcccctctttggccaggctggtctcgaactcctgaccttaggtcatttgcctgcctcggcttcccaaagtgttaggattacaggcgtcagccactgtgcctggcc a score=22834.0 s hg17.chr17_random 240608 158 + 2618010 CAGATGTCTCTAATTCTAACATGAGACGTATTGCAGGATCATAGCAGAGTGA-GTTGCTGATGTATCCAGAAGGAAACGAGCATGGAACACTCACGACAGCTGTCCTGAGAAGTGTGTGTGTGCTGTGCTTGAATATCTCACTGCTCATTTATACACAG s panTro1.chr1 5996485 158 - 229575298 CAGATGTCTCTAATTCTAACATGAGACGTATTGCAGGATCATAGCAGAGTGA-GTTGCTGATGTATCCAGAAGGAAACGAGCATGGAACTCTCACGACAGCTGTCCTGAGAAGTGTGTGTGTGCTGTGCTTGAATATCTCACTGCTCATTTATACACAG s canFam1.chr6 70604035 150 - 79106041 CAGATGTCCTTAATTCTAGCATTAGA-----TGCAGTTTCCTAGCAGAGTCACACTGCAGACATATCCACTAAGACAGTATCAT-GAACTCGGGCTACCAATGTCTTAAG--TCGTCTACATTCTGTACTTAAATATCTGCTTGCCCACTTCTAC-TAG a score=9407.0 s hg17.chr17_random 240766 51 + 2618010 GCTTTCTGGTGACTGAGTTAACAGTATCTGTTTCATAAATAATGTAGCCCT s panTro1.chr6 66318799 51 + 161576975 GCTTTCTGGTGACTGAGTCAACAGTATCTGTTTCATAAATAATGTAGCCCT s canFam1.chr6 70604185 47 - 79106041 GTTTTGTGTTGAC----TCAGCGTTATCTGTTTCACAAATAATGTAGCATT a score=20496.0 s hg17.chr17_random 240817 466 + 2618010 CTTTCTTTCTTTCTCTCTCTCTCNttttttttttttttttttttttttttgagacagggtcttgctctgctacccaggctggagtgcaatggtgcagtctcagctcaccgcaact----------------------------------------------------------------tcaccatgcctggctaattttttctttttttttttttttgagacggagtttcnctgtttttgcccaggctggagntgcaatg--gcacaatctcggctcaccacaatctttgccttttgggttcaagggattctcctgcctcagcctcccgagtagctgggattacaggcatgtgccaccacacccggctaatgttgtagttttantagagacggggtttccctatgttggttaggctggtctcaaactcctgaccntcaggtngnatctacccgcctcggcctctcaaagtgctgggatcacaggcatgagccatca----ctcctggcctaatttttgtatttttagtagagag-a s panTro1.chr6 66318850 481 + 161576975 Attt-----------------------------------------tttttgagacagggtcttgctctgttacctgggctggagtgcagtggcatgatctctgctcaccataactaccgcctccttcggttcaagcgattctcctgcctcagcttcctgaataactgggattacaggcgccaccatatctggctaatatctt-tttgtttttgtttttgagacggagtt-cgctcttgttgcccaggctagag-tgcaatgtcgccca-tctcggcttactgcaacctccacctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcgccaccatgcctggctaattttgtatttttagtagagacagggtttctccatgttggtcaggctggtcttgaactccctacc-tcaggtg--atccggccacctcagcttcccaaagtg--------acaggtgtgagccaccggcagcgcccagcctaatttttgtatttttagtagagaatg a score=2295.0 s hg17.chr17_random 240821 41 + 2618010 CTTTCTTTCTCTCTCTCTCNttttttttttttttttttttt s panTro1.chr1 5996698 33 - 229575298 CTTTCTCTCTCTCTCt--------ttttttttttttttttt a score=8894.0 s hg17.chr17_random 241283 116 + 2618010 gggtttcactctgttggccaggctggtctcgaattcctgacctcaagttatctgcctgcctcggcctcccaaactgttggaattacaggcgtgaaccaccatgcctggccAGCTCT s panTro1.chr6 130207625 116 + 161576975 gggtttcgccatgttggccaggctggtcttgaacttctgacctcaagtgatccacccgtctcggcctcccaaagtgctgggattacaggcgtgaaccacgatgcctggccAGCTCT a score=55187.0 s hg17.chr17_random 241399 376 + 2618010 ATTTCTTTAAGCCTACATGTTTTGCACTTGTTAAAAGTATTTGAACATACAATTACTCAGCTTCCCTTGTTT----ACGCGTGAATTTTGTAGAATCTTAAATATTTTTTCCAATCTAAGCTTTATTT--TATCCCGTTTCTTCTATATTTGTATAACTTTAGGCGGCTATCTTCATTGAAAGTTTTTTCTC-AAAAGCCTTAAGATAGAACGTAGTTCTTGGCAGCAATTTGAAAGTTATTTGAGGAGAAGGGGAGACTTACAATGA--TGATTCAAATGAAGGAAACTAAAAAGTAATGAAGCAAGGCAGAGGAAAAAGCAGTACTCACTTGAGCA---CATCCCAAAAGAAAAACATTTCAAATGTAACTAGAAAAAAATATGCT s panTro1.chr6 130207741 376 + 161576975 ATTTCTTTAAGCCTACATGTTTTGCACTTGTTAAAAGTATTTGAACATACAATTACTCAGCTTCCCTTGTTT----ATGCTTGAATTTTGTATAATCTTAAATATTTTTTCCAATCTAAGCTTTATTT--TATCCCGTTTCTTCTATATTTGTATAACTTTAGGTGGCTATCTTCATTGAAAGTTTTTTCTC-AAAAGCCTTAAAATAGAACATAGTTCTTGGCAGCAATTTGAAAGTTTTTTGAGGAGAAGGGGAGACTTACAATGA--TGATTCAAATGAAGTAAACTAAAAAGTAATGAAGCAAGATGGAGGAAAAAGCAGTATTCACTTGAGCA---CATCCCAAAAGAATAACATTTCAAATGTAACTAGAAGAAAGTATGCT s canFam1.chr6 70604232 378 - 79106041 ATTTCATTAATTCTGTAAGTTCTGTGTTTGTTAAAAGTGTTCG-ACATACAGTTACCCACCCTCCCTTGTTTGTGCATGCTTGGATCTTGTATGAGCTGAAATAGTTTTCTC--TTCAAGCTATGTTTCCTCCCCCTTTTCTTACATATTTGTAGAACTGTAGTTACCTGTCTCCATTAAAACCTTTTTCTTGAAAAGACTCTAAAGAGATTGTAATCTCAAGAA-----TTGAGAGGAGTTAGGGGAGAA-GGGAAATCTATGAGGATGTGGTTCCAGTTAAGCAAAGTCAAGA-TGATGAAGTAAGGTAGAGAGATGAGGACTGTCTACCTGAGCACTGCCTCCCAGAGCAGGAAAGCTGAAGGGGTTACTGGGAGGGACTAGGCA a score=4194.0 s hg17.chr17_random 241775 45 + 2618010 GAAGTTCGCAATACAGAAATAATTATTAATAAGATAGCTTTAAAG s panTro1.chr6 130208117 45 + 161576975 GAAGTTCGCAATACAGAAATAATTATTAATAAGATAGCTTTAAAG a score=1613.0 s hg17.chr17_random 241820 10 + 2618010 CCCTGCTCAG s panTro1.chr6 130208162 10 + 161576975 CCCTGCTCAG s canFam1.chr6 70604661 10 - 79106041 CCCACCTCTG a score=104688.0 s hg17.chr17_random 241830 205 + 2618010 CTTTTGAATGTTGGGAATTGACC-CAGAGGTGGCTGTAACCTA---AGATGGTTCCTTCAGTAATGACCATTTTTTCTTTTTCAAGATGATGATTATTCCCCACCTTCTAAGAGAC-AAAGACCAACGAGCCACCACAG---CCACCAGTCCCAGAACCCGCCAATGCTGGGGAACGGAAAATGAGGGAGTTCAACTCTGGTAA--GTTC----TCAGC s panTro1.chr6 130208172 205 + 161576975 CTTTTGAATGTTGGGAATTGACC-CAGAGGTGGCTGTAACCTA---AGATGGTTCCTTCAGTAATGACCATTTTTTCTTTTTCAAGATGATGATTATTCCCCACCTTCTAAGAGAC-AAAGACCAACGAGCCACCACAG---CCACCAGTCCCAGAACCCACCAATGCTGGGAAACGGAAAATGAGGGAGTTCAACTCTGGTAA--GTTC----TCAGC s mm5.chr5 17227792 212 - 149219885 CTCGTGAGTGGCTAGAGTTGCCCTCAAACCACGCTGACACCCAG-CAGCTGGTTCCCCCGGTAACAA--AGGTTTTCTTTTTCAAGATGATGACTATTCTCCACCCACCAAGAGGCTAAAGAGCACGGAGCCGCCCCCGCCCCCGCCCGTCCCGGAGCCCGCCAACGCTGGCAAGCGCAAAGTGAGGGAGTTCAACTTTGGTAAGTGTCT----TCAGC s rn3.chr12 23380563 209 + 46649226 CTTGTGAGTCCCCAGACTTGCCC-TCAAAACTGCTGTCACCCAG-CAGCTGGTTCCCATAGTAACAA--AGATTTTCTTTCTCAAGATGATGATTATTCTCCACCTACCAAGAGGCCAAAGAGCAGTGAGCCGCCCCCACCCCCACCGGTCCCAGAGCCCACCAACGCCGGCAAGCGCAAAGTGAGGGAGTTCAACTTTGGTAA--GTCT----GCAGC s canFam1.chr6 70604671 210 - 79106041 TCTTTGAATATTGAGGATTGAAC--AGCGGTAGCTGGGACTATGTCATACTGTTCCTCCAGTGATGA--CCATTTTCTTTTTCAAGATGATGATTATTCTCCACCTACCAAGAGACCAAAGAGCAGCGAGCCGCCCCAG---CCAGCGGTCTCGGAGCCTGCCAATGCTGGGAAGCGGAAAGTGAGGGAGTTCAACTTCGGTAC--GTTCAAGATCAGA a score=-838.0 s hg17.chr17_random 242035 3 + 2618010 -GAA s panTro1.chr6 130208377 3 + 161576975 -GAA s mm5.chr5 17228004 3 - 149219885 -GGA s canFam1.chr6 70604881 3 - 79106041 CGT- a score=49640.0 s hg17.chr17_random 242038 473 + 2618010 ATCCATGACCTTTTCCTTTATCTTCT-----------------GGACTCTCAGTGTGACTGATGAAAGTTACCACATGCTCTGCAGGGGGAAATGGTTTAGCATGTGTTACTACATCTTAATCACATCTTTGTAAAGCCAGGAGCATTTTACAAGTCACGTTACAGACATTGTTTAAACATAGTCTGTATTTACCAAAGTATAGGACATTGTATCATCTCATATTAATT--AGTTAGTTGGCTCAAAATTAGTG--CTAATGACTTAGTAATTCAGTGATTTCTGTTAGCTTTANAAACCT-------TTATTNTCANGAACTNATNTTCACCTCTTGGTTTTCATTTTTGCGGTGTGTCA-----CTGCCTGCTGGCTGCTAATTT-ATTAACTCCCAGTGAATCA--TGTC-CTGTGAAGGGACTGAATATTAGTGGCAATGTATGTTGATGATTTGTATTTTGAATAAATAGTTTGAATACATAGAACATTAAGCTTGTATACATTT s panTro1.chr6 130208380 469 + 161576975 ATCCACGACCTTTTCCTTTATCTTCT-----------------GGACTCTCAATGTGACTGATGAAAGTTACCACATGCTCTGCAGGGGGAAATGATTTA--TTGTGTTACTACATCTTAATCACATCTTTGTAAAGCCAGGAGCATTTTGAAAGTCACGTTACAGACATTGTTTAAACATAGTCTGTATTTACCAAAGTATAGGACATTGTATCATCTCATATTAATT--AGTTAGTTGGCTCAAAATTAGTG--CTAATGACTTAGTAATTCAGTGATTTCTGTTAGCTTTA-AAACCT-------TTATT-TCA-GAACTA--TTTCACCTCTTGGTTTTCATTTTTGCTGTGTGTCACGAATCTGCCCGCTGCCT----ATTT-ATTAACTCCCCGTTGATCATGTGTC-CTGTGAAGGGACTGAATATTAGTGGCAATTTATGTTGATGATTTGTATTTTGAATAAATAGTTTGAATACATAGAACATTAAGCTTGTATACATTT s canFam1.chr6 70604884 449 - 79106041 GGGCAGGCGCCTTTCCTCTCTGTCCTTCCAGTGATTTCTTGTAGAACTTTGAGCCATTCTGGTGAGCGT----------------GGAGGGAATGAGCTG--CTTTAAAAATACATTACTACCTTAGATTAGCACAGTTGGAAGCA-----------AGCTTACAGACACTGCTGAAGCAAGGTTTGGGG----CCGAGCATGAGGCACAGCATCTTCTGATGTTAAGTACAGTTAATAGACTTTGAGTCAGGGTTTTGACGACTTAGTAATTAAGTCGTTTTTCTTCACTTTA-AAACCTCATTTGCTTATT-TAA-AATCTA--TTTTACGCATTGATTT---TTCTTGTACTGTGTAA-----CTGCCAGCAGCTA----ATCTAAACAAGCCCCAGCGGATGATGTATCTTTTTTAAGGGACTAAATATCAGTGG-----------AGCAAATTATATTTGCAATCCATATTTTGAATAGTTAGAACATTTCACTTGTGTACTTTT a score=282.0 s hg17.chr17_random 242511 3 + 2618010 TGA s panTro1.chr6 130208849 3 + 161576975 TGA a score=17386.0 s hg17.chr17_random 242514 117 + 2618010 AAATAGTATTTTAA-TATTCTACTGTGTCATAGTTACAATGATTGGATATATATTGA-ATTTATATGTACTTTAAGTTGTTCTA----TGTTTATGGTCTTTAGCATTCT-----AACGTGCAATTGT s panTro1.chr6 130208852 117 + 161576975 AAATAGTATTTTAA-TATTCTACTGTGTCATAGTTACAATGATTGGATATATATTGA-ATTTATATGTACTTTAAGTTGTTATA----TGTTTATTGTCTTTAGCATTCT-----AACGTGCAGTTGT s canFam1.chr6 70605525 127 - 79106041 AAGTAGCTTTTTAAGTATTTTAATTTGTCATAGTCATAAATGTTGGATATAAATTGATTTTTATATGGATAGT-AGTAATTTTGCAGCTATTTATATTCCTTAGCACTCTCTTGAAGGGTGCAACTGT a score=2605.0 s hg17.chr17_random 242631 34 + 2618010 ATATCTGTTAAGTCTTTTT-TTTTTCGAGATTAGA s panTro1.chr6 130208969 35 + 161576975 ATATCTGTTAAGTCTTTTTATTTTTCAAGATTAGA a score=132356.0 s hg17.chr17_random 242665 915 + 2618010 CTGATTTATTGAGGCGTCTGTTTGATGCCACATGAAGTGGCCCAGGCTTTGTGTAGGGGTTGAGGTTAAAGCAGGAAGAAGGGTGGTGAGAG------GCGGGGCACCAGGGTTAGGTTGGAATACCTGGGGGTGCTCTGAGGCTCCCCAAGTTTCCCTGGTCTTGGCCGGCTGTGCTGCTGGCCTGGGCATCTGATGGGCCTGCAagg------------------gtggtccaggggctagggcagggactttggagtcacgccgttggctttgaatccagactcctacacttggtagctgtgAACTCTCCATGCCTCAGGGACCTGCAGAACTGAGCTCTGTCTGAGCCAGGTTCCATCCAGGCACTGCGCATCCATCCAGAGGGGCACTGCCTCAGGCTGCTCGCTGTTCACTGC------------------------CTTCTCAAGCAGACCCTTGTCTCCTTCTAGGCCCTCACAATCCAGTGGAGGAGACGAAACTCATCTGCCTCTGTCCCTCTGGGCACGCCTCATGCCAGGTGCATCTGTGGACAGGGGCCATGCTCCTGGGCTTCCAAAGTTGGAGAAAGCTGCCAGGCTCAGGTGGGTACATCACAGCAGCTGCTGCCCTCTGAACACAGTGACAAAAGAACACTCTGGGCCTGGAGCCctggtctggggcatt--gggcaaggctgttgcacttctctgatcccatttccccatctggaaagtgcgctgattgtatctccctgtgggcaCTGAGGGCTCAGTGTTAGTTTGAGAGCCAGCATCTGGGGTTTGG-GCTGTAATTCCCCGTCAGCCCCAT-AGCTGCGGGGAACCAGGGACTTTGTTGGGATTACCCTAGGCATCAGTTTAGCTTCCTGCC--------CCTGGCTTGGGCTCAGCACCTGAAGTAGTCTAGGGGGTAGGTGGTGCTGGTGGGGGCTGGGGCTTTTACCCAGA s panTro1.chr6 130209004 915 + 161576975 CTGATTTATTGAGGCATCTGTTTGATGCCACATTAAGTGGCCCAGGCTTTGTGTAGGGGTTGAGGTTAAAGCAGGAAGAAGGGTGGTGAGAG------GCGGGGTACCAGGATTAGGTTGGAATACCTGGGGGTGCTCTGAGGCTCCCCAAGTTTCCCTGGTCTTGGCCGGCTGTGCTGCTGGCCTGGGCATCTGATGGGCCTGCAagg------------------gtggtccaggggctagggcagggactttggagtcacgccgttggctttgaatccagactcctacagttggtagctgtgAACTCTCCATGCCTCAGGGACCTGCAGAACTGAGCTCTGTCTGAGCCAGGTTCCATCCAGGCACTGCGCATCCATCCAGAGGGGCACTGCCTCAGGCTGCTCGCTATTCACTGC------------------------CTTCTCAAGCAGACCCTTGTCTCCTTCTAGGCCCTCACAATCCAGTGGAGGAGACGAAACTCATCTGCCTCTGTCCCTCTGGGCACGCCTCATGCCAGGTGCATCTGTGGACAGGGGCCATGCTCCTGGGCTTCCAAAGTTGGAGAAAGCTGCCAGGCTCACGTGGGTACATCACAGCAGCTGCTGCCCTCTGAACACAGTGACAAAAGAACACTGTGGGCCTGGAGCCCTGGTCTGGGGCATT--GGGCAAGGCTGTTGCACTTCTCTGATCCCATTTCCCCATCTGGAAAGTGCGCTGATTGTATCTCCCTGTGGGCACTGAGGGCTCAGTGTTAGTTTGAGAGCCAGCATCTGGGATTTGG-GCTGTAATTCCCCGTCAGCCCCAT-AGCTGCAGGGAACCAGGGACTTTGTTGGGATTACCCTAGGCATCAGTTTAGCTTCCTGCC--------CCTGGCTTGGGCTCAGCACCTGAAGTAGTCTAGGGGGTAGGTGGTCCTGGTGGGGGCTGGGGCTTTTACCCAGA s canFam1.chr10 42730337 836 - 72717409 CCGATTTATCGAAGCATTTGCTCAGGGCCAA--TCGGTAGCTCAGGCTCAGTGCAGGGG-TGATACCAAAGCA-GAGGAGGGGTGGTGAGGAGGGCTTGCGGGGCGAGAGTGCCAGCTTAGGTTACCTGG-----------------------------GATCCTGGGGAG----GGTGCTGGCCTCAGCATCTGATAGACCTGCCAGGTCTACTcagagaggtggcatggtgcaggggtcagggcgtggactctgg-gcccccatgttgggtttgaatcctggcctctgTGCCCCATGCCCCTGGCCTCTCTATGCCCT-----------------TGCTCTGTCAGAGCCGAGTCCCGTTGAGGCA---------------------GGCCACCTTGGGTTGCTCACTGGCTGCTGCCACCTGTGTGTGACGTTGCCAGGGCTGCCCGGGCAGAGACTGGTCTCCAGCAAACCCTTCACAATCCAGCTGAAGAGGCGTGACTTACCCACCTCTGCCCCTCTGGGCGTCCATGGTGGGGGATGTGTC------CATGGTACACGCT------------------------GTCACCAGGC---------TGCATGGGACCAGC-------------GCCCAGGGACAAGAGAACACTCT-------GATCCCAGGGCTGGGGCTTTGGGGGAAAGACTCTTG--CTTCCCTGAACCTGTTTCCTTATGTGTAAAGGGAGTTGATCATATCTCCCTG-ATGCACCAAAGTCTCGGTGTTCATTTGAGAGCTAGCATGAGGGGGTTGGAGCTGTAATTCCCTTCGGGACCCATAAGATGGGGGGAGCCAGGGATTTTGTTGGGATCGCCC-AGGCCTCAGATCAGCTTCCTGACTTCCTAAGCCTGCCTTGGGCTCAGCATCTGAAGCAGCCTGGGATGCAGGCAGCACTGTCAGGGATAGTGGCTTCCTCCCAGA a score=1737.0 s hg17.chr17_random 243580 18 + 2618010 CTGAGGTCACACCCAGAG s panTro1.chr6 130209919 18 + 161576975 CTGAGGTCACACCCAGAG a score=54205.0 s hg17.chr17_random 243598 447 + 2618010 CCAGAAGTCTTGGTGCCTGCTCTGGGCAAAGGTGccagcctgtgtgacaagagcgaaactccgtctccaaaacaaaaacaaaaaaCCTTGCATCATTTCAAGGGGCTCACACCTCCCTAAGGGCCTGGTAATTGGCGGGCTCTGGCCTGCATCTGGCCCCGAGGGTGTAGGTAACACCCCACCTTACCTGGTTTCTTCCTGCCAGGGCCAATCTTCAGACCTCAGGA-CTTTACAGCCT-ATCCCACCTCCC-CTCTGGCCAGCCTTGAGCCCTTGTGGGTCCAGCACTTTTTCCAGGCTGTCTCCTGGT-------------------TGTCCTTCTGCCTTGAGGCCTGGCTCATGCTG----CTCCCCCTCCC--ACTCTCC----------------------------------------AAGACCCACAAGGACCACTCCACACCCAGCTCAGCCCCATCCCCTCAGATAGTCCTTTCTCTTTCCTCAGGTGGCCAGGTGCATATCTTG s panTro1.chr6 130209937 447 + 161576975 CCAGAAGTCTTGGTGCCTGCTCTGGGCAAAGGTGccagcctgtgggacaagagcgaaactccgtctccaaaacaaaaacaaaaaaCCTTGTATCATTTCCAGGGGCTCACACCTCCCTAAGGGCCTGGTAATTGGCTGGCTCTGGCCTCCATCTGGCCCTGAGGGTGTAGGTAACACCCCACCTTACCTGGTTTCTTCCTGCCAGGGCCAATCTTCAGACCTCAGGA-CTTTGCAGCCT-ATCCCACCTCCC-CTCTGGCCAGCCTTGAGCCCTTGTGGGTCCGGCACTTTTTCCAGGCTGTCTCCTGGT-------------------TGTCCTTCTGCCTCGAGGCCTGGCTCATGCTG----CTCCCCCTCCC--ACTCACC----------------------------------------AAGACCCACAAGGACCACTCCACACCCAGCTCAGCCCCATCCCCTCAGATAGTCCTTTCTCTTTCCTCAGGTGGCCAGGTGCATATCTTG s canFam1.chr10 42731390 386 - 72717409 cCTGGGAGCTCAATTCCTGCTCTGGGTAAGAATGC--------------------------------------------------------------------------------------------------------CCCTGACCTC------------AGCGTGGAGGTGACAGCCTGCCTCACCTGGTTTCTGCC-ACGAGGGCAAATCTTCAGACCTCAAGATCTCTGCAGGCTCGTCCCAACTCCCTCTCTGGCCAACCTCTCACCCTCCTGGCCCTAGCACTCTCCAC-GCCAGTCTCCTGGTCCCACAACCAGCCTACGCCTGTCCTCCAGCCTCCAGGCCTGGCTCACGGTGTGCCCTCCACCTTCCCAGCTCTCCAGCCACCCCGGAGGGCTTGAAATAGTTGAGGCAACCACCAAAGGTCAGCAAGGGCCACTC-----------CCGCCTCTCCACCTCGTACTGTCCTTTCTCTGACCCCTAGTGACCAGGTACCTGCTTCG a score=7840.0 s hg17.chr17_random 244045 93 + 2618010 GTGTGAGGACCTTCGCTGTATCTGGGAATG-CCTACTGGTTACCTTGGTAACAGAGAACAAGGCATTTACCTGATATGAGTGTCTTGGTTCACT s panTro1.chr6 130210384 94 + 161576975 GTGTGAGGACCTTCACTGTATCTGGGAATGCCCTACTGGTCACCTTGGTGACAGAGACCAAGGCATTTACCTGATATGAGTGTCTTGGTTCACT a score=57384.0 s hg17.chr17_random 244138 391 + 2618010 GTCTACATGGCTAGGGAGGGAATCAATAATAGGCTTTTCACTTGCTGCAAGGGCCGGTTCTCCTGGCCCCATGG------------------------------CTCTAGGGATGGAGGACGCTGCAGGAGATGCAGCGCTCACTTCCTAGCTGAGG---------------------------------------------------------------------ACTGTGGGTCATCTCAGGGCGATTTCAC--AGTCCCCACATGCCCCACCCCCTCAGCTCTGCAAATACCAAGCAGTGCAGCCTG-CCTAGGGGATGA-TGGGCTCGAGAGTGCCCAGGTAGTGCCCAGAGTGCCCTTGGCAGGCCCCTCACCTGGCTGCTTCCACAGCTCTGTAGCAAGAGTTCTAACCTTTTTTCACCGTGAAGCCTGCTGAGAATAAGAGCTGTGGACTGTTTTCCCAGAAAGGCATGTACATGCTCTCCACACAA s panTro1.chr6 130210478 391 + 161576975 GTCTACATGGCTAGGGAGGGAGTCAATAATAGGCTTTTCACTTGCTGCAAGGGCCAGTTCTCCTGGCCCCATGG------------------------------CTCTAGGGACGGAGGACGCTGCAGGAGATGCACCGCTCACTTCCCAGCTGAGG---------------------------------------------------------------------ACTGTGGGTCATCTCAGGGTGATTTCAC--AGTCCCCACATGCCCCACCCCCTCAGCTCTGCAAATACCAAGCAGTGCAACCTG-CCTAGGGAATGA-TGGGCTCGAGAGTGCCCAGGTAGTGCCCAGAGTGCCCTTGGCAGGCCCCTCACCTAGCTGCTTCCACAGCTCTGTAGCAAGAGTTCTAACCTTTTTTGACCGTGAAGCCTGCTGAGAATAAGAGCTGTGGACTGTTTTCCCAGAAAGGCATGTACATGCTTTCCACACAA s canFam1.chr10 42732792 473 - 72717409 GCCTATATGGCTTGGGAGGGAGTGGACGATAGTCCCTTCGCTGTTCCCAATGGTTCATTCTCATGGTTATGTGGTTACAGGGCCAGAAGTGGGTGGATGGGGCACCACAGGGGCGGAGGATGCTGCAGG-GATGC--CACCCGCTTTCCAGGTGGGGCTGGTTTGCTCCAGGCCAAGGACTTGTTAGGAGTTAGCCAGTGAGTGTCTGTCAGACTGTTCTAGAAACACCGGAAGTCCTCTAAAGGCCATTTCACAAAGTCCCAGCACTGCCCACCCTCTTGGCTATGCCAGTGCAAAGCAG-----CCTGCCCTAGGGGATAACTGATCTCAGAAGTCCCCAAGCAGTCCCCAGGATGCCCTTGGCAGGCCCCTGCCCTATCAGCTCCCAAAGTTCTATAGCAAGAGTTCCCAACTCTCTCTG-TGTGGACCCTGCTGAG----------GTGGTCACTTTTGTTAGCAACACATGCACA--CTCTCCACACAG a score=28481.0 s hg17.chr17_random 244529 316 + 2618010 AACCTTTCATTGTggccaagcacagtggctgatgtgatcccagaactttgggaggcggagccagtcggatcacctgaggtcaggagttcaagaccagcctgcccaacatggcgaaa-ccctgtctctactaaaaatacaaaaaattanccnaggcgtggtggcagccacctgtaatcccagctactccagaggctgaggcaggagaatcacttgaacctgggaggcgcaggttgtagtgtggtgagatcacgccactgcactccagcctgggcgacaggagtgaaactctgtctcaaaaaacaaaacaaaacaaaac s panTro1.chr6 130210869 316 + 161576975 AACCTTTCATCGTggccaagcacagtggctcatgtaatcccagaactttgggaggcggagccagtcggatcacctgaggtcaggagttcaagaccagcctgcccaacatggcgaaacccctgtctctactaaaaatacaaaaaattagcc-aggcgtggtggcagccacctgtaatcccagctactccagaggctgaggcaggagaatcacttgaacctgggaggcgcaggttgtagtgtggtgagatcacgccactgcactccagcctgggcgacaggagcgaaactctgtctcaaaaaacaaaacaaaacaaaac a score=53992.0 s hg17.chr17_random 244845 407 + 2618010 CTTGCATCCTTTCAGGGGGCTCACACCTCCATAAGGGCCCAGTAATTAAACCCTTTGGGCCTGAGGGTGAGAAACTTTGTCCCAGTTCTTCCCCAAGTGATCAG-CCCAGGGGTAAGG-AAGGAGAAGCC---AGAAAGCAGGACCCATGAGAAG-GGCCCCCTCCTGGAGTTTGAGGCCCACTCCCTCCTACCCCTGCCTCTCCTCTGTCCAGGACTCCTCCCTGCTCTGCCCCACTCCTGGGGCCATAACCATGGGGAGCTGT---GGTTTT--CTACAG----GCCCCTGGGCACAAAGTGGGCAGGCTCA--------CCTGGAGGCGATCAGAGTAACATGGCAGGAAGTGAGGGGGA--AAGCCGCCC------------------------------------TGGAACTGTGCCTCTCTGCC--CCCTGACGTCACTG----------GCGTGCACTCCTCCCT-----------------------CCC----CTCAG s panTro1.chr6 130211185 413 + 161576975 CTTGCATCCTTTCAGGGGGCTCACACCTCCCTAAGGGCCCAGTAATTAAACCCTTTGGGCCTGAGGGTGAGAAACTTTGTCTCAGTTCTTCCCCAAGTGATCAG-CCCAGGGGTAAGG-AAGGAGAAGCC---AGAAAGCAGGACCCATGAGAAA-GGCCCCCTCCTGGAGTTTGAGGCCTACTCCCTCCTGCCCCTGCCTCTCCTCTGTCCAGGACTCCTCCCTGCTCTGCCCCACTCCTGGGGCCATAACCATGGGGAGCTGT---GGTTTT--CTACAG----GCCCCTGGGCACAAAGTGGGCAGGCTCA--------CCTGGAGGCGATCAGAGTAACATGGCAGGAAGTGAGGGGGAAGAAGCTGCCC------------------------------------TGGAACTGCGCCTCTCTGCC--CCCTGACGTCACTG----------CCGTGCACTCCTCCCT-----------------------CCCCTCACTCAG s canFam1.chr10 42733266 487 - 72717409 CGTGTATGGTTTCAGGGGATTCAAACCTCTCTGAGGGCCCATTCACTGAACCCCTTAGACCTGAGGTTGAGAAACTCT---TCACTTCTCTCTAGGGTGATCAGCCCCAGGGGTGTGGTTATGGGAGGCCCAGAGAAGGCAGGTCCCAAGGGAAGAGGCCCACT----GACTTTGAGGTCCATTCCCTCCCA-CCCTGCCTCTCCTTTG-CGGTGACTCTCCCCTACGCAGCCTCGCCCCCAGGACATGGGCCAAGGGGCCCTGTCCAGGACTCAGCCCCAGCAGAGCCCCTGG------AGAGGGCAAACTCAAACGTGCTCCTGGACTTGAGGGAAGCAGGCTTCCTCAGAGTGAGAA-----AAGTCGCCCCACCTCTGTACTTCCCCCCACTCTCGCCCGCCCTAATGGCACCCCTCCCTTCAGCCCACCCCTACCTCACTGGATCCCCCCTCAGCCTACCCCTCCCTCACAGGAGCACCTCCCTCCTCAACCCCTCCCCCAG a score=50171.0 s hg17.chr17_random 245252 358 + 2618010 GCAGTGGCA---TGAGTTCCATGTGAGCGCTGTCCTGCTCCCTCTGCTGCCTCTTTTTTT---TCTTGGGGCTGCCATAACACTTTCCCTTCC----------CCAGCCCTGCCAACCTGGTGGGACATTGGGCTTCCCTCTCACAGGGTCCTGGGGACAGGCCCATCC------------------TTTATCATACACACAGAGAGACCGTTTTTTTCTTCAGAACCTGGGGAGCAGCCAGGTTCCATGAGTTAAATGCAGATCTGAACCAAGCTGGGA-TTGGGGTACACACTCTCCTCTACTGAAAAGTAGCTAGGGATTCCAACTAGGTGAGAAGG--AGAGTGGGGCAGAGCCAGACCAGACAAGGACTGATC----ACCTGGAAAAAGCCTGC s panTro1.chr6 130211598 358 + 161576975 GCAGTGGCA---TGAGTTCCATGTGAGCGCTGTCCTGCTCCCTCTGCTGCCTCTTTTTTT---TCTTGGGGCTGCCATAACACTTTCCCTTCC----------CCAGCCCTGCCAACCTGGTGGGACATTGGGCTTCCCTCTCACAGGGTCCTGGGGACAGGCCCATCC------------------TTTATCATACCCACAGAGAGACCGTTTTTTTCTTCAGGACCTGGGGAGCAGCCAGGTTCCATGAGTTAAATGCAGATCTGAACCAAGCTGGGA-TTGGGGTACACACTCTCCTCTACTGAAAAGTAGCCAGGGATTCCAACTAGGTGAGAAGG--AGAGTGGGGCAGAGGCAGACCAGACAAGGACTGATC----ACCTGGAAAAAGCCGGT s canFam1.chr10 42733857 382 - 72717409 GCAGCAGCATCTTGGGCTCTGTGGAAAC-CTG-ACTGCTTCCTCCGCCCCCCTCTCTCCCAAGTCTTGGGGCTGGCAACACACTCCCCCCCCCAACCCTGCTGCCAACCCTGCTGACCTGGTGGG----TGTACT--CCCTTCACAGGGTGCTAAAGGCAGCCCCCCCCACCCCCGCCCCGCTCCCGTATCTCTGACCCACAGCGG---CCCTTTTGTCTTCAGGGTCTGGGGAGCAGCTGGGCTCCATGGGTTCAGTTCCCATCTG-ATCAAGCTGGGCTTTGGGGGACAAGCTCCCCT----TGCAAAGTAGCCA-GGATTCCTGTGTGCTCAGATGGCAGTGGTGGGACTGGACAGCGTCCAGGGAGGACTGGACAGTGACCTGGGGAGAGTCTGT a score=65011.0 s hg17.chr17_random 245610 798 + 2618010 CATCAAAGGTCTTGNNGNCAAATGNCNTNGGGTGNNCANgtggctcactcctgtaataccagcactttgcggggctgagacaggtggactacttgaggcgag---ttcgagtccagcctgggcaacatggcaaaaccgcatctctactagaaatacaaaaattagctaggcatgctacactcctgtcatcccagctactcaggagactgaggcaggagaatcacttgaactggggaggcagaggtcgaagtgagccgagattgtgcccctgcactccagtctgggagacagagtgaaact-ggcctc--------aaaaaaaaaagaaTATGGCCTTGGCAGAGAGGGGCCAGCCCAGTAGTGCCTTCCCTTGGGTTTCTCCTGGGTAGGCCTCTGCCATGAGGAGGTGCTTCCTTCTGCCTGTCCATGGCCCACAGCAATGGAATGTCTGTTTCTGGGGGTTGGGTGGGAGAGTGCTGGCAGAACTGGAAACCTTCAGGTGGGGtttttttgttttgttttgttttcgagatggagcgtcgctctgtcacccaggctggagtgcagtggtggaatctcagttcactgcaacctctgcccccctgggttcaaataattctcctgtctcagcctcctgagtagctgagattacaggcatgtgccaccatgcccggctagtttttgtattttttgtatagatggcatttcaccatgttggctgggctggtctcgaactcctgacctcaagtgatccacccatctcggcctcccaaagtgctgggattacaggcatgagccactgagccNCAN s panTro1.chr6 130211956 798 + 161576975 CATCAAAGGTCTT---GGCAAATgc---tgggtgc---agtggctcactccggtaatcccagcactttgaggggctgagacaggtggactacttgaggcaaggatttggagtccagcctgggcaacatggcaaaaccccatctctactagaaatacaaaaattagctaggcatgctacactcctgtaatcccagctactgaggaggctgaggcaggagaatcacttgaactggggaggcagaggtcgaagtgagctgagattgtgcccctgcactccagtctgggagacagagtgaaactgggcctcaaaaaaaaaaaaaaaaaagaaTATGGCCTTGGCAGAGAGGGGCCAGCCCGGCAGTGCCTTCCCTTGGGTTTCTCCTGGGTAGGCCTCTGCCATGAGGAGGCGCTTCCTTCTGCCTGTCCATGGCCCACAGCAATGGAATGTCTGCTTCTGGGGGTTGGGTGGGAGACTGCTGGCAGAACTGGAAACCTTCAGGTGGGttttttttggttttttttgttttcgagatggagcgtcgctctgttacccaggctggagtgcagtggtggaatctcagttcactgcaacctccgcccccc-gggttcaaacaattctcctgtctcagccacctgagtagctgagattacaggcatgtgccactatgcccggctaatttttgtattttttgtatagatggcattttgccatgttggccaggctggtctcgaactcctgacctcaagtgatccacccacctcggcctcccaaagtgccaggattacaggcatgagccactgagccc--a a score=84122.0 s hg17.chr17_random 246408 572 + 2618010 GCCCNTTCNNNGGGGTTTTGAGGCTTCACTACAAtactagtttcctgtggctgctgcaacaaattaccacacacgtagtgacttaaaacaaccaaaatgtattcccttacaggtctgaaggccagaattctacagtaagtcctactgagtcaaggtgggagcagggtcggtagcttcc-gaggctctg-cgggagaatccg---------tttcctggccgtagagg----tggcctgcactctgcagcttgtgctgcccgtctcgaatgactggagtttcctgcttctgtcactacacctcccaccctctcc---atcacctgctctgctcttacaagg-----atccgagtgagtacatcaaccccaaaag----------------------ccaaagacccttaacttcattatatctgcaaagctccttttgccatataaggtcatgttcaccagttcccgggattaggatatgggcatcttgggggca-----------tcagcctgctacaGCTAGGCTGCAAA----ACTGTTACACCCTCCTGGTGTTTCAATGATTGGGAGAAAAGGGGTTGGCATTTTTTGCTTAGGGGTCCCTCTTAAACTTGTATCTGTAAGGTCGGGG s panTro1.chr6 130212754 572 + 161576975 gccCCTTCAGGGGGGGTTTGGGGCTTCACTACAAtactagtttcctgtggctgctgcaacaaattaccacacacttagtgacttaaaacaaccaaaatgtattcccttacaggtctgaaggccagaattctacagtaagtcctactgagtcaaggtgggagcagggtcggtggcttcc-gaggctctg-cgggagaatccg---------tttcctggccgtggtgg----tggcctgcactcctccgcttgtgctgcccgtctcgaatgactggagtttcctgcttctgtcactacacctcccaccctctcc---atcacctgctctgctcttataagg-----atccgagtgagtacatcaaccccaaaag----------------------ccaaagacccttaacttcattatatctgcaaagccccttttgccatataaggtcatgttcaccagttcccgggattaggatatgggcatcttgggggca-----------tcagcctgctacaGCTAGGCTGCAAA----ACTATTACACCCTCCTGGTGTTTCAATGATTGGGAGAAAAAGGGTTGGCATTTTTTGCTTAGGGGTCCCTCTTAACCTTGTATCTGTAAGGTCTGGG s canFam1.chr10 42734351 594 - 72717409 GTCCTTTACAGTAAGCTCTGCACCTCCATGACTCtgttagtttcctgtcgctgctgcaacaaatgtccacagacccagcggcttaaaacaacacgtatttatt--cttatagttctggcagtcagaattctaagatctgggcta--aagtcaaagtgtcagcagggctggttccctcaggaagctctgaagggagaatccatttgttgccttttctagcctctgtgggcgccggcctgcattccacagct----ctgaccccttc-------------------------ccactatatctcctacttcctctctgacctcctgccttcctcccataaggaaggaatccccaggattacatgaagcccacggggttattccaggagtcaccttgtccaaaaatcattaatgtaattacatctgcaaagtcccctttgcccgatagagtaatgttcccaggttcatgggataagaacatggacatcgggggggtgggggacactattcagcctactacaGTTAGGCTGCAGAATGGACCACAAGGCCCTCCGGGTGTTTTAGCGCCAGGGAGAGAAAGGCTTTGGGTT-----CCGCGAGATCCTTCCTAACCTTGTATTTCTAAGGTCTAGG a score=11080.0 s hg17.chr17_random 246980 129 + 2618010 GTCCCTCTTAACCTTGTGtttttgtttttngttttttttgaggtggagtcttgctctgtcatccaggctggcagtggcgtgatcttggctcactgcaatgtctgcctcctgggttcaggtgattctcct s panTro1.chr6 130213326 127 + 161576975 GTCCCTCTTAACCTTGTGtttttgtttttg--tttttttgaggtggagtcttgctctgtcatccaggctggcagtggcgtggtcttggctcactgcaacgtctgcctcctgggttcaagtgattctcct a score=6103.0 s hg17.chr17_random 247109 83 + 2618010 gcctcagcctcctgagtagctgggactacaggcgcccgccaccatgccctgct--gttttgtatttttggtagggacggggtggg s panTro1.chr6 67478958 85 + 161576975 gccttagcctcccgagtagctgagactacgggcgcctgccactaagcctggctaagttttgtatttttggtagagacggggtGGG a score=2915.0 s hg17.chr17_random 247203 107 + 2618010 gnnngnnagggg---ggnntttnggcntatnntgccctganntcaaagtgatccgcct-gcctgtgctgccaaagtgctgggattacaggcctgcaccactgcacccggct s panTro1.chr6 67479685 103 + 161576975 gtgggtgaggggagggggttttccac-tgtgttgcccttagctcaaagcgatctgcccagcctctgctcccgaaatgctaggattacaggcctgcaccacT--ACC----- a score=17395.0 s hg17.chr17_random 247310 129 + 2618010 GCTGTAAAGTCTTATTTC-ACACAGCTGAGACATGTTTTAGGAAGTTTGCTAAAAGACCCCTGGAGACCGCCTCATTGTGACCTCCCTGTTATTGTGTTTAATTTGATTGAACTTTTCTGCCCTCCT-------------GCT s panTro1.chr6 67479788 130 + 161576975 ACTGTAAAATCTTACTTCCATACAGCTGAGACATGTTTTAGGAAGTTTGCTAAAAGACCCCTGGAGACCTCTTCATTGTGGCCTCCCTGTTGTCATGTTTAATTTGATTGATCTTTTCTGCGCTCCT-------------GCT s canFam1.chr6 70605652 141 - 79106041 -GTTTAAATACTTATTTCGACAGAACATAGGCATGCTTTAGAAAGTTTTCAGAATGA-CCTTAGACACCTCCTCTTTTTTGCCTCCACTTAATACTGTTTAATTGGACTGGTCTTTTTTGACCTTTTTAGAAATTATCAGGCT a score=229.0 s hg17.chr17_random 247439 16 + 2618010 TTTCA-------------------------------------GCTTCTCTAAT s panTro1.chr6 67479918 53 + 161576975 TTTCATAAATTAAAAGGCTGAAAAGAGGTACTAAACTTTAAAACTTCTCTTAT s canFam1.chr6 70605962 19 - 79106041 TTTCA----------------------------------AAAACATCTCTTAT a score=17640.0 s hg17.chr17_random 247455 79 + 2618010 AGTCTCCCATTAAACCAATTCTAAGAACCACCAAGAAGGGGAAATTTTTTCTTGAAAGCAGTAAAA---------TGATATGGACTGT s panTro1.chr6 67479971 79 + 161576975 AGTCTCCCATTAAACTAATTCTAAGAACCACCAAAAAGGGGAAAAATTTTTTTGAAAGCAGTAAAA---------TGATATGGTCTGT s rn3.chr12 23381277 82 + 46649226 AGTCTCC-----AGCCGTTCCCAAGAACCA-CAGAAAAAGGAAAGACCCTTGGGGAGGCAGGAAAAAAGCCCAACTAAGGTGGGCTGG s canFam1.chr6 70605981 78 - 79106041 AACCTCTCACTGGACCAATCCTAAGAAGCA-CAAAAAAGAGAATAGTTCTTCAGAAAGCAGTAAAA---------TTATATAGATGGA a score=2077.0 s hg17.chr17_random 247534 7 + 2618010 TAGAATG s panTro1.chr6 67480050 7 + 161576975 TAGGATG s rn3.chr12 23381359 7 + 46649226 TGGACTG s canFam1.chr6 70606183 7 - 79106041 TAGGATA a score=4779.0 s hg17.chr17_random 247541 51 + 2618010 TAAAATATATGAAATCAGTCATTATACGT---------------TAGTGCTGCTCTGACATAGGGA s panTro1.chr6 67480057 51 + 161576975 TAAAATACAGGAAATAAGTCATTATATGT---------------TATTGCTGCTGTGGTATAGGGA s canFam1.chr6 70606190 66 - 79106041 TATTATGTAGAAAATAAGTTATTAGATGTTGGATCATTGTAATATAATAGTGTGTCCAAACGGGGA a score=580.0 s hg17.chr17_random 247592 29 + 2618010 CGTGTTATTGAGAAGCAACTTTTG--CTTGG- s panTro1.chr6 67480108 29 + 161576975 TGTATTATTGAGAATCAACTTCTG--GTCAG- s rn3.chr12 23381403 27 + 46649226 CGTGATACTGAAAATAGACCCTT---CTCG-- s canFam1.chr6 70606256 32 - 79106041 TTTATTATTTAGATGTAACTTGAAATCTCAAT a score=57536.0 s hg17.chr17_random 247621 79 + 2618010 TTTTCAGAGAAATGGAATCATCGTATCGCTGATCTACGTAAACAAACTGAAGAATTGTCTGAAAGAAAATATGGTATGT s panTro1.chr6 67480137 79 + 161576975 TTTTCAGAAAAATGGAATAGTCGTATCACTGATCTACGTAAACAAGTTGAAGAATTGTCTGAAAGAAAATACAGTGTGT s mm5.chr5 17228722 79 - 149219885 TTTTCAGAGAAATGGAACGCACGCATCACTGACCTACGGAAACAAGTTGAAGAGTTGTTCGAAAGAAAATATGGTATGT s rn3.chr12 23381430 79 + 46649226 TTTTCAGAGAAATGGAACGCGCGCATCACTGACCTACGGAAACAAGTGGAAGAATTGTTTGAAAGAAAATACGGTATGT s canFam1.chr6 70606288 79 - 79106041 TTTTCAGAGAAATGGAATGCTCGAATTACTGATCTACGGAAACAAGTGGAAGAGTTGTTTGAAAGAAAATATGGTGAGT a score=8660.0 s hg17.chr17_random 247700 142 + 2618010 CTAAACTGGAAAAGTCTTGTAATCTTATGTTCATGGGCGTTTACACAGTGGAGTTACTGTTCATCATGGGGGTACCGTGGACAAGCCCAGGGCTGCCGGCGAGTCATGCCATCCTTACATGT-TTCTCCT-----TGTAAGGTGCTTT s panTro1.chr6 67480216 142 + 161576975 CTAAACTGGAAAAGTCCTGTAATAGTTTGTTCATGAGCATTTACACAATGGAGTTACTGTTCATCATGGGGGTACTGTGGACAAGCTCAGGGCTGCTGGTGAGTCATGCCATCCTTACACGT-CTTTCCT-----TGTAAGGTACTTT s mm5.chr5 17228801 97 - 149219885 CT----------------------------------GCATCCA---GATCAGGTCACTGCTCAGACCAGG-----------CAGGCC--GGTCTGCCAGGGAGCTAAGCCTTCCTCACATCC-GTCCCTTATACATGTAGGGCGTCTT s rn3.chr12 23381509 80 + 46649226 CTGCACCAG---------------------------CCATTCA---------------TTTCAGGCCAGG-----------CAGGCA--GGGCTGCCGAGGAGTTAAGCCTTCCTCACAGCT-GTCCCTTATACGT------------ s canFam1.chr6 70606572 136 - 79106041 cTAAACTAAGAAATTCTTATAATAGTTTGTTGATAAGCCTTTTAACAATGAGGTTATATATCATCCAATG-------TAAGAAAGTCCACTTCTCTCAGTGAAGTGTGCCTTGCTTGTATATGGTTCCCT-----TAGAAGGTCATGG a score=4247.0 s hg17.chr17_random 247842 50 + 2618010 GTAGTGTCT----------------ACACACTTTGTTTCTAGATTGCTGCAAAGCTGAGGAAAAGT s panTro1.chr6 67480358 65 + 161576975 GTAGTGTCTGTCTAA-ATATTAGAAACTTTCTTTGTTTCTAGATTACTAGAAAGCTAAGGAAAAGT s rn3.chr12 23381589 50 + 46649226 ---------GTATGGCACGTGAGAAA-------TAGTTCCAGATTACCATTAAGTGGAAGCAAAGT s canFam1.chr6 70606708 62 - 79106041 GGAGTATCTGTCCAA-ATATTAGAAACCCTATC---TCCTAGATTACTTTGATGGTTTGGGAAAGT a score=10434.0 s hg17.chr17_random 247892 109 + 2618010 TGTATTTCTTTAGTTATTAGTTAGCATTTCTTTTAAACTTTCAGTATGGAGATTGGATA-TTTATTTACATATTTATTGC-AAAGCCCTGGATCTTAGGAATTTCATTGA-------------------------------------------------------------------A s panTro1.chr6 67480423 176 + 161576975 TGTAGTTCTCTAATTATCAATTAGCATTTCTTTTATACTTTCAGTGTGGATATTTGGGA-TTTCTTTATATATTTATTGC-AAAGCCCTAGATCTTTGAGATGTGACTGAAAAAAAatatatatatacacgtatactctttatgggtgtatatatacacgtatatatatatatatata s canFam1.chr6 70606770 111 - 79106041 TTTCTTTCTGTGATTACCAGGAAGCATTTCTCTTAACACTTCAACATGAGCCTTTGGGAGTTTATTTACATATTTGTTGCAAAAGTCCCAGATCTTGGAGGTTGAATTGA-------------------------------------------------------------------A a score=21091.0 s hg17.chr17_random 248001 315 + 2618010 ttatttatttattttttttgagacggagcctcactctgtcgcccaggctggagtgcagtggcacgatctcggctcactgcaacctccgcctcccgggttcaagcagttctctgcctcagcctcccgagcagctaggattacaggcaccagccaccacgcctggctgatttttgtatttttagtagagacggggtttcatgatcttggctaggctggtcttgaactgct-gacctcctgatccactcacctcagcctcccaaagngctgggattataggtgtgagccaccatgcctggccAAATATTATTTTTTTNA s panTro1.chr6 67480599 315 + 161576975 tttttttttttttatttttgagatggagtctcgccctgtcaccgcggctggagtgcaatggcatgatctcaattcactgcaacctccgtctgccaggttcaagcaattctctgcctcagcctaccaagtaggtgggattacaggcgcctgccaccatgccccactaatttttgtatttttaggtgagccaaggtttcacgatcttggccaggctggtcttgaact-ctagacattgtgatccacccacctctgcctcccaaagtgctgggattataggcgtgagccaccatgcctggccAAATAATATTTTTTAAA a score=5342.0 s hg17.chr17_random 248316 34 + 2618010 ATGAATTGTTTCTCTTAGTCTGCTTTGTTAAATT s panTro1.chr6 67480914 34 + 161576975 ACTAATTGTTTCACTCAATCTGCTATGTTAAATT s canFam1.chr6 70606894 34 - 79106041 AGTAATAGTCTTACTTCATCTGCTATGTTAAGTC a score=587.0 s hg17.chr17_random 248350 11 + 2618010 TGGAATTCATc s panTro1.chr6 94532355 7 - 161576975 TG----TTATT s canFam1.chr6 70606928 11 - 79106041 TGGTATTCATC a score=10284.0 s hg17.chr17_random 248361 188 + 2618010 tg----ggnncngnnnnncacacctgtaatcccagcactttgggaggccaaggcaggcagat-atctaggtcgggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagacgggtatggtggcacatgtctgtaatcccagctanttcg--ggaggccaaggcaggan s panTro1.chr6 94532362 192 - 161576975 Tggtcaggcatggtggctcatgcccatgatcccagcactgtgggaggccgaggcaggcggatcacctgagatgggagttcgagaccaaactaaccaacatggagaaaccctttctctactaaaaacacaaaattatccgggtgtggtggcgcatgcctgtagtcccagcta---cgcaggaggccaaggcaggag a score=3233.0 s hg17.chr17_random 248606 80 + 2618010 gcaccattgcact-gtagcctgggcaaaaagagcaaaactccatctcaaaataaataaataaataaaaTGTTCAGTACTCA s panTro1.chr6 94532598 69 - 161576975 acaccattgcactcttagtctgggcaacaagagcaaaattctgtcttaaaaaaaaaaa------------TTCGATATTCA a score=382.0 s hg17.chr17_random 248686 4 + 2618010 CCAA s panTro1.chr6 67481295 4 + 161576975 CCAA a score=44936.0 s hg17.chr17_random 248690 440 + 2618010 GGTGCCCCTGTTGTCTCTACTTTTATCTTGATGCATCACTGAATTGATGTTAGATTTCAAATTCATCATTGC---GCTGATACTATTCTATCCTGAAGCCACCTTTATATAGTGATGAAAGAAATTAGCGATTTGTTATTATCCTCTCTCTGTTGATATACATCAAATACTCACCTAAAAAAGAGCAACAACCAGTGGAAAACATGAT----------GTTTTTATTTGGGTGACTATTTA-CTTGTAACCTACTAGCAAACTACAAAATTGTATGATATGCAGAATTT-------------------------------------TAACTGAATTGCTTTAAGTGAACATTTAAACATGATAAACAATATTGATGGTATTTATGTTAATATACTTAAAATGAACA-TTTTTCTTCATCATGAGTAATATAACCTACTCCTCAATGAAAACCTAGCAC-----TAAATTTGCTAATGAATTCA-ATAACATTTCCGTA s panTro1.chr6 67481299 451 + 161576975 GATGCCCCTATTGTTTCTGCCTTTGTCTTGATGCATCGCTGAGTTGACATTAGATTTCAAATTCTTCTTTTC---CCTTATCCTATTCTATCCTAAAGCCACCTTTATATAATGATGAAAGAAATTAGCAATTTGTTATTATCATCTCTCTGATGGTATATAGTAAATGCTCACCT-AAAAATAGCAACAACCAGTGAAAAACATCATGTGTTTTGCCGTTTTTATTTGGATGACTATTTATTTTGCAATCTACTAGCAAGCTGTAGAATTGTATGACATGCAGAATTT-------------------------------------TAACTGAAGTGATTTAAGTGAATATTTAAACGTGATAAACCATATCGATGGTGTTTATGTTAATATACT-----TGAACATTTTTTCTTCATCATGAGTAATATAACCTATCCCTCAATGAAAGTCTAGAATTAGAGTAAATTTACTAATGAATTAA-ATAAGTTTTCCATA s canFam1.chr6 70606940 441 - 79106041 AGTGTCCCAGTTTTTGATG-------ATTGATACATAATTGG--TTAAGTTAGATCTCAAATTCTCTTCTCCTTTCCTTTCATTATTCTATCCTACATTTGTCTTTAGATAGTGATCAAGGAAACAAGCACCGTGTTACCACCA-------GTTGGTATATATTAAATGCTCACCT-AAAAATAGCAACCATCATTGA-----ACTGT----------GTTTTTATTTGGAGGATTCTTTACTTTGTACTAGACTGACAGTCTATAAAATGGGCTGATTCACTGAATTTTCACTTGAAAATCCTATATTTAGCGTGTTCTCCTGTATCACTGAGTTTCTCTGGGTTACGCTCTTGA-ATGATAAACTACACGGGTATTATTTACTTTGATAAACT----------------------TCA--AATATGACAGCCACCCCGTCTGTGGAGATTCAGAATGAGAGCAAATTCAGTAACAAATTCATTTAACTTTCCCCTA a score=32997.0 s hg17.chr17_random 249130 261 + 2618010 ATATTTTTAGTTACATGCTTAAGGTTCTCTTAGTGTTTCTCCCACTTTTTA--------ATAGCTTATGCC-TTTTTCACCTTTGGTTTTTTTTTGGTTCATTTTAAAGCAAAAAT-CTCACAACATGTGATATCTGGAAACACTGTAACCTAGTGGTAAGACCA----TAGGCCCTGGGGACACA--GGCtggccacgtctcttc--tcctgtctgagctttagtatcctcttttg-----tggtcatgagaactgaagatctgtcccgaagatttgataaga s panTro1.chr6 67481750 260 + 161576975 ATATTTTTAGTTATGAGCTTAAGGTTCTTTTAGTGTTTCTTCCACGTTTTA--------ATAGTGTACGCC-TTTTTTGCCTTT-GTTTTTTATTGGTTCGTTTTAAAGCAAAAAC-CTCATAAGATGTGCTATTTGGAAGCACTGTAACCTAGTGGTAACGTCT----TAGGCTCTGGGGACACA--Gcctggccacatctcttc--tcctttctgagccttaatatcctcttttg-----tgttcatgagaactgaatatctatcccgaagatttgataagg s rn3.chr12 23381988 236 + 46649226 ATATTTTCCTTTCCTTGCCTCAGGTTCCCTTTGCATTCCTGCCACCTCTTGTTCAGGCCGTAGCTTGTGCTATAGTTCACC------------------CATTTCAAGGCAGGAAA-TGCAGACAGTCCGGG---TAGAAGTGGTGACACACAGCAGGCAGGTCACAGCTAGGCCAGGGCGCCATG--TCTT---CGCTTCCCGCC--TCCT------------GCAGGCGCTCCTG-----TGGGCACGGGGACAGACGG--TGTCCTGAGGGTCTGGGAAGA s canFam1.chr6 70607381 256 - 79106041 ATGCTTTCAGTTATTTCCTTAAGATTCTCTTAGTAGCCTTCCCTC--TCCA--------GTAGCCAGAGCA---GTTTGCCTGT-GATTTTAATTGGTCCACTTCAAAGCAGAAACTCCCAGAACCTGTTCTACAT-TAAGCAGTGTCCCATGCTGGTAAGGTTA----CAGGCCCTGGGGACAGAATGCTCGGCCATTTCTCTTCATTCCTCTCTGAGC---------CTTTCTTGGGAAAGGATCAGCAGAGCTGAGGATGTGTTACGAAGATTTGATAAGA a score=8042.0 s hg17.chr17_random 249391 69 + 2618010 -----------tagtaaagtgcttcacataataccagacatataaatacacagtaaatgCTTCCTCCTTATATTTTTATT s panTro1.chr6 67482010 69 + 161576975 -----------tagtaaagtgcttcacataataccaggcatataaatacatagtaaatgTTTCCTTCTTATGTTTTTATT s canFam1.chr6 70607637 76 - 79106041 TAGCATAGTGTCTGTAAATTACTTCCTGTAATAGGTTGTATGTAATT----AGCAAGTGCTTTTTGTTTACACATTTGTT a score=4221.0 s hg17.chr17_random 249460 54 + 2618010 GATTGATTGATGgagacagaatcttgctctcttgcccaggctggaatgcagtgg s panTro1.chr6 67482079 54 + 161576975 GGTTGATTGAttgagacagaatctcgctctgttacccaggctggagtgcagtgg a score=13970.0 s hg17.chr17_random 249528 226 + 2618010 ctgcaacctccacctcctgnggttcaggcaattctcctgcctcagcctcccgagtagctgggattacaggtgcctgccaccatgcccagctaattattgtacttttagtacagacggggttttaccatgttggccaggctggtctcgaactcctgacctcantgatctgcctgncctcggcctcccaaactgctgggattacaggtgtgagc---cactgtgcccagcc s panTro1.chr6 67484761 221 + 161576975 ctgtagcctccacctcctgag-ttcaagcaattctcttgcttcagcctcccgagtagttgggattacaggcacctgccaccacgcacagctaatttttgtatttttagtagagacagtgtttcaccatgttggccaggctggtctagaactcctgacctt-gtgatctgccagtc-tcggcctaccaaagtgctgggattacaggtgtgagcgatcgc----cccAAC- a score=6154.0 s hg17.chr17_random 249754 52 + 2618010 TGTCTTTTCTCTTCA----CACCCGCAGTTCATGATGAAATATTAAATATGTACTA s panTro1.chr6 67484982 52 + 161576975 TGTCTTGTCTTTTCAAAACCATCC----TTGGTGATTCAATGTTAAATATATACTA s canFam1.chr6 70612888 52 - 79106041 TGTCTCTTCTTTTTAAAACTGGTC----TTCATGACTGAATATCAAATAAGTACTA a score=10942.0 s hg17.chr17_random 249806 43 + 2618010 GTGGATATTAC-TTTGCTGAATATTGCCTAATGAATATTAAGTA s panTro1.chr6 67485034 43 + 161576975 GTGGATGTTAC-TTTGCTGAATATTGCCTAGTGAATATTAAGTA s rn3.chr12 23385382 43 + 46649226 GTGTGTGTCTC-CTTGCTGCATGCCGCCTGACAGGTACTCACCA s canFam1.chr6 70612940 44 - 79106041 GTAGTTGCTACTTTTGCTAAATGTTGCCTGGTAAATCCTTAGTA a score=49301.0 s hg17.chr17_random 249849 83 + 2618010 TTTATTCTCACCTTTCAGACATGAACTTATGAATTCAACAGGTGAAGATTTACAACTTGATAAATCAACTTTGTC---AGGTACGT s panTro1.chr6 67485077 79 + 161576975 GT----CTCACCTTTCAGACATGAACTTATGAATTTAAGACATGAAGATTTACAGCTTGATAAACCAGCT---TCAGGAGGTAGGT s mm5.chr5 17232612 83 - 149219885 TTAATTCTCTCCTTTCAGACATGAGCTTCTGAACTCAACACGAGAAGATTTACAGCTTGATAAACCAGCC---TCAGGAGGTGGGT s rn3.chr12 23385426 83 + 46649226 TTAACTCTGTCCTTTCAGACATGAGCTTCTGAACTCAACACGAGAAGATTTACAGCTGGACAAGCCCGCA---TCAGGAGGTGGGT s canFam1.chr6 70612984 83 - 79106041 TTTTTTCTTACCTTACAGACATGAACTTCTGAATTCAACACGTGAAGACTTACAGCTTGATAAACCAGCT---TCAGGAGGTAGGT a score=1137.0 s hg17.chr17_random 249932 13 + 2618010 CTTCAGTC--AAGTC s panTro1.chr6 67485156 15 + 161576975 CTTCAGTCTTGAGTC s mm5.chr5 17232695 15 - 149219885 TTCTCGCCTCCAGTT s canFam1.chr6 70613067 13 - 79106041 CTCCAGTC--TTGTT a score=-827.0 s hg17.chr17_random 249945 1 + 2618010 A----- s panTro1.chr6 67485171 1 + 161576975 A----- s mm5.chr5 17232710 6 - 149219885 AGCCCA a score=1592.0 s hg17.chr17_random 249946 17 + 2618010 GATTAGAAGATTATGTG s panTro1.chr6 67485172 17 + 161576975 GATTAGAAGATTATGTG a score=3364.0 s hg17.chr17_random 249972 58 + 2618010 ACACTTAACATTGATTT-----AATGGTAGCTTCCACATGAAATAGTATGCCTCTAAGTATTA s panTro1.chr6 67485512 63 + 161576975 ATGCTTGACATTGTTTTTTTAAAATGGTACCTTCCACATGAAATAATATGCTTGTAACTATTA a score=2602.0 s hg17.chr17_random 250030 28 + 2618010 ATTATGTCCTAGGACAGGAGAATTCATG s panTro1.chr6 67485575 28 + 161576975 ATTATGTTCCAGGACAGGAGAATTCATG s canFam1.chr6 70613210 21 - 79106041 ATTATAT------ACAAGA-AACACACA a score=26455.0 s hg17.chr17_random 250058 258 + 2618010 TTGTCAAAATTCTCATACTCTCTAGAACAATAAACTCATTTTCTTTTT-------ATTA---------GTAAATATTGCATTTANTGNGGTAGNACAAANACTGAAAGAACAATATTTGTTCTACTTTTGAGATGCAAGATTCATCTGGCATAATGCATTGAACAGGTTATTATTGAAGTCTACACCAGTCAACTGAATAAGCATTCATCAAATGTCCATGATATGCAGGACATAA----GTTT-TCTTTTAGAGTATGGAACCATGCATATTATCTTT s panTro1.chr6 67485922 274 + 161576975 TTGTCAAAATTCTAATACTCTCTAAAACAGTGAACTCATTTTCTTTTTTTAACCCATTATAAATACATGTAAATGTTGCATTTAT--GGGTAG-ACAGA-ACTAAAAGAACAAAATTTGGCCTACTTTTGAGATGCAAGATTTATCTGGCATAATGCATTGAACAGGTTATTATTGAAGTCTACACCAGTCACCTGAACAAGCATTCATGAAACGTCCATGATACCCAGGACACAAGAATGTTT-CCTTTTAGAGTATAGAGCCATGCATATCATCTCT s canFam1.chr6 70613231 246 - 79106041 ACATTGCAATACT-ATGCTTTCAAGAAGAATAAACTTACGTTCCTCCT-------AATA--ATTAACCGTAAGCATCACATCTCT--GGGTAG-------GCGAAGAGAACTATACCTGTTCTACTTCTGAAATACAAA----GTCTGGCACAGTGTA--GCAGAGTGTTTTATCCACATCTGCGTTGGTCAATGGAATCCTCTCTCATC-ATCGTCCA-------CAGGACATGAAAGGGTTCACTTTTTAGAGCACAGAGCCATGGGTATCATACTT a score=27637.0 s hg17.chr17_random 250316 434 + 2618010 TAATTAGATGATTTAG-TTAGATATGTTTTTAAAGAACTAGAAATATAATTGATTTT----CTTGTTTTGGCTCTGGAGTGGAGTGGGGACGAAACAGAATGGATTCACACTTGTTTAGATTTACTAAAATGGAAAGATTGCAGCAAGATCATATCCCTAGTCTCCCTACTCCCTATAGCAAATGTCACCTGCTAGCTGtttttttttttttttttttggaggttga-----agttttgttctgtcacccacgctggagtgcagtggtatgatctcagctcatggcaa-gctcacctcctgggttcaagcaattctccctgcctcagcctcctaagtagctgggattacaggcctctgccaccacgcctgcctaatttttgtatttgtagtagagttggggtttcaccatgttggccaggctggccttgaactcctgacttcagg s panTro1.chr6 67486196 422 + 161576975 TAATT----------GTTTAGATGTGTTTCGAAAGAAATAGAAATAGAATTGGTTTTCTTACTTGTTTTGCCTCTGGAGTGAAATGGGGACAAAACAGAATGGAATCACAC-TGTTAAGATTTACTAAAATGGAAGGATTGCAGCAAGATCATATCCCTAGT-------CTCCCCATAGCAAATGGCACCTGCTAGCTGttcttttcttttttttttt-----ttgagatggagtcttgctctgtcacccacactggagtgcagtggcatgatctcagctcactgcaacatccatctcccaggttcaggcaattctccctggctcagcctcccaagtagctggcatcacaggcacctgccaaaaggtctgcgtaatttttgcatttgtagtagagttggggtttcaccatgttggccaggctggtctcaaactcctgacctcagg a score=2940.0 s hg17.chr17_random 250750 63 + 2618010 agattcacccgcctcagcctcccaaagtgcttgggattatgggtgtg--tcactgcacttggATT s panTro1.chr6 67487015 62 + 161576975 tgattcacttttcttggcctcccaaagtgct-gggattacaggtgtgagtcactgcacTT--ATC a score=19781.0 s hg17.chr17_random 250813 166 + 2618010 T--AATGGGATATTTCACTACAGACTTCGGTAAACAGAATATTAGCATTTTTGGTGTTCTTTTTATTTTA-CTCATACTGTTTTTCTTTGGACTCAATCACAAT------AAC--AGAATTAAAGATCAAAGTGTAAAAGTTAAAGACCAGTACAGATTCAATAATTATTCTTTTCT s panTro1.chr6 67487077 168 + 161576975 TGTAATGGGATATTTCACTGCAGACTTTGATGAACAGAACATTAGCATTTTTGGTGGTGTTTTTATTTTA-CTCATAATATTTTTCTTTGGACTCAATTACAGT------AAC--AGAAGTAAAGATCAAATTATAAAAATTAAAGAGCAATACACATTCAATAATTATTATTTTCT s canFam1.chr6 70609327 168 - 79106041 --TAATACACTGTTTGATTGCAGATTTGGTTAGAC----TACTGGCATCGTTGGTGTTCTTTTTTTTTAGTTTCTTTGTAGTATTCTTGTGATTTAGTTATAGTTTAGAAAACAAAAAAGCAAAGATGAAGTAGTGAAAGTTACAGAGCAGTACATATTC---AATTACTCTATTGT a score=2098.0 s hg17.chr17_random 250979 7 + 2618010 ACATACC s panTro1.chr6 67487245 7 + 161576975 ACATATT s rn3.chr12 23383045 7 + 46649226 ACAGACC s canFam1.chr6 70609495 7 - 79106041 ACAAACT a score=74131.0 s hg17.chr17_random 250986 136 + 2618010 -------------------GTGTTTAAATGA-TATCCCTTTTTCTTTTTGTTCTTATAGCTCGAGCTGTAAAAGCCAAAGGTCCGGTGATGATCCCATA-CCCTTTTTTCCAGTCTCATGTTGAAGATTTTTATGTAGAAGGCCTT-CCCAAAGGAAt s panTro1.chr6 67487252 124 + 161576975 -------------------GTGTTTAAATGA-TACGCTTTTTTCTTTTTGTCTTTATAGCTCAAGCTGTAAAAGCCAAAGGTCC--------------ACCCCTTTTTTCCAGTCTCAAGCTGAAGATCTTTATGTAGAAGGCCTTCCCCACAGGAAt s mm5.chr5 17230724 136 - 149219885 -------------------GTCTTGTAACGACTGCGCGTTTCTCTTTTCATCC-TAAAGCTCAAGCCATCAAAGCCAAAGGCCCGGTGACGATCCCGTA-CCCTCTTTTCCAGTCCCATGTTGAAGATCTTTACGTAGAAGGGCTT-CCTGAAGGGAT s rn3.chr12 23383054 136 + 46649226 -------------------GTCTTGTAATGATGGCCCCTCTCTCTTTTCATCC-TAAAGCTCAAGCTATAAAAGCCAAAGGCCCGGTGACGATCCCATA-CCCTCTTTTCCAGTCGCACGTCGAAGATCTGTATGTAGAGGGCCTT-CCTGAAGGGAT s canFam1.chr6 70609502 156 - 79106041 GTGGTTGTGGTTATTCCTTGTAAATTAATGATTTTTCCTTTCTCTTCTTATCCTTAAAGCTCAAGCTATAAAAGCCAAAGGTCCTGTGACGATCCCATA-CCCTCTTTTCCAGTCACACGTTGAAGATCTTTATGTAGAAGGACTT-CCAGAAGGAAT a score=18094.0 s hg17.chr17_random 251122 345 + 2618010 tttttttttttttttttttttgagatg---gagttttcactcttatcgcccaggctggggtgcaatggcgcaacct--------------tgct---------ggtcactgcaacctctgcctcctgggttcaagaaattctcctgccttagcctcccaagtcactgggattacaggtgcccaccaccacaccaggctaatttttgtatttttagtggagatgcggtttcaccatgttggccgggccagtctcgaactcctgacgtcaagtgatcttcccgcctcgactcctgatatcaagtgatcttcccgcctcggcctcccagaatgctgagattacagacgtgaac--ccatgcctggccAGGAATTTT s panTro1.chr6 67487376 336 + 161576975 tttttttttttttttttt-----ggtgacagagtttttactcttgtcgcccaggctggagtgcaatggcatgatctaggctgcagtacaatgctgtgatctcagctcactgcagcctctgcctcctgggttcaagcgattctcttgcctcagtctcctgagtacctgggattacaggcgcccgccactacaccaggctaa-ttttgtatttttaatagagatggggtttcaccatgttggccaggctggtctggaactgctga-----------------------ac--------tcaggtgatcctcctgcttcagcctcccagagtgctgggattacaggcatgaaccactacgctaggccAGGAATTtt a score=100.0 s hg17.chr17_random 251467 1 + 2618010 G s panTro1.chr6_random 35879196 1 - 67355074 G a score=55936.0 s hg17.chr17_random 251468 91 + 2618010 TTTTTTAGGAAGGCTTTCTACTAATGGAATTCCTGGCCTTGAGAGGATGTTACTTTAGAAGGAAAGGATTT-TTTTGTTATTAAAAGGTAAG s panTro1.chr6_random 35879197 91 - 67355074 TTTTTTAGGAAGGCTTTCTACTAATGGAATTCCTGGCCTTGAGAGGATATTACTTTCGAAGGAAAGGACTT-TTTTGTTATTAAAAGGTAAG s mm5.chr5 17230860 92 - 149219885 TCCTTTTAGAAGGCCGTCGACGTACGGCATTCCTCGCCTTGAGAGGATATTGCTGGCGAAGGAAAGGATCCGCTTCGTGATTAAGAAGTAAG s rn3.chr12 23383190 92 + 46649226 CCCCTTTAGAAGGCCATCAACGTACGGCATTCCTCGCCTGGAGAGGATATTGCTGGCAAAGGAGAGGATCCGCTTTGTGATCAAGAAGTAAG s canFam1.chr6 70609658 92 - 79106041 TCCTTTTAGAAGACCATCTACGTATGGAATTCCTCGCCTTGAGAGGATATTACTGGCAAAGGAAAGGATTCGTTTTGTGATTAAGAAGTAAG a score=2895.0 s hg17.chr17_random 251559 25 + 2618010 ATTCCTGGATTCTTATTGGACTGTT s panTro1.chr6_random 35879288 25 - 67355074 ATTCTTGGATTCTTATTAGACTGTT s canFam1.chr6 70609750 17 - 79106041 --------ACACTCTTTGGACTTTT a score=11665.0 s hg17.chr17_random 251584 105 + 2618010 ATCTCTGTTATGA-GTAATCCATCTT-----------------TAGTCATTCACCACTAGGGTTGTA-TTTAATTAAGTCTGAGTTATTTTATGGTGgttttgttttgttt----tgttttgttttTa s panTro1.chr6_random 31526227 100 + 67355074 ATCTCTGTTATGA-GTAATTCATCTT-----------------TAGTCATTCACCACTAGGGTTGTA-TTTAATTAAGTCTGAGTTATTTTATGGTGgttttgttttgttt----tgtttt-----TA s canFam1.chr6 70609767 114 - 79106041 GTCTTTGTTCTTATTTAGTGCATCTTTTTATACTGTTGTCAAATGTTTGTTAACCTCTAGGGCTCTGTTTTAATTAAATTTGAGTTAT---------ACATTGTTTTATTTACCATGTTTT-----AA a score=3744.0 s hg17.chr17_random 251689 47 + 2618010 ctgaattttgttctcattgccgtggcttgagggcaatgacgtgatct s panTro1.chr6_random 31526327 47 + 67355074 CCAaattttgttctcattgccctggcttgagggcaatggtgtgatct a score=15075.0 s hg17.chr17_random 251750 219 + 2618010 ctctgccttccaggttcaagcaattctcctgcctcagcctccttagtagctggatttacaggcatgcgccaccatgcctggctaattttttgta---tttttagtagagatggtgtttcaccatgttgaccaggctggtctagaactcctgaccttgggtgatccacccgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgcccagcc s panTro1.chr6 67495491 217 + 161576975 ctccgcctaccgggttcaagcaattct---acctcagcttcccaagtagctgagattacaggcatgcaccaccatgtctggcta--tttttaaaaaatttttagtagagatgatgtttcaccatgttggccaggctggtctccaactcctgaccttgggtgatccacccgcctcggcctccggaagtggtgggattacaggcatgagccattgggcctggcc a score=-738.0 s hg17.chr17_random 251969 5 + 2618010 ----TGGGC s panTro1.chr6 67495708 5 + 161576975 ----TAGGC s canFam1.chr38 5547106 5 + 26492144 tcttt---- a score=18436.0 s hg17.chr17_random 251974 84 + 2618010 CTGCTTCTTTCTCT--------------------TTTTCTTTTTTTTTC--ATTAGCAGCTTAAAATTGGTGCCTTATTCAGACACAAGCAGAAGGACATTAGCCC s panTro1.chr6 67495713 105 + 161576975 CTGCttctttctttctctctttctttctctttttttttttttttttttc-tAGTAGCAGTTTAAAGTTGGTGCCTCATTTAGACACAAGCAAAAGGATATTAGCCC s mm5.chr1 63860414 83 - 195203927 ---CTCCTTTTTTT--------------------TCTTTTTGTTTTTTCCTAGTAGTGTTTTTAATTGGCAATTTCATTTACACATAAGTAAAAGGATATTAACCC s canFam1.chr38 5547111 85 + 26492144 cttctttcttcttt--------------------ctttcctttctttTATCCACAGTAGTTTTAAATTGCCTGTTCTGTTAGACAAAAG-AAAAGGATATTAACCC a score=9385.0 s hg17.chr17_random 252058 33 + 2618010 AGCTTTGGAAATAGGTGAGAGCCCATATATGAT s panTro1.chr6 116669747 33 - 161576975 AGCTTTGGAAATAGGTGTGAGCCCACATATGAT s mm5.chr1 63860497 33 - 195203927 AGCTCTGGAAATAAAACTAAGCCTGTATATTAG s canFam1.chr38 5547196 33 + 26492144 AGGCTTGGATATAAATGTGAACCCATATATTCC a score=217709.0 s hg17.chr17_random 252091 553 + 2618010 TTTCCTAGTTTCTCCTCCCCCTTTGC--TTTTTGCTCTCTTGTTAGTATATTAATTGTTTTCACTCTCTG-----------------------------------------------------------AATCTTTTTTCCCCA---TTTCTTTGGCAGTCAT------------------------------------TTTTAC----TTGTCTTGGAAGAGTAGGTGAAGAGCTGTTTTTAGGACTCTTTGAAAGGGT--ACAGTATGGGTGACAGTCTTGGCTAATGGTAAC---ATCCAGGGAGCTGGGGTCAGCGTGAGCTGGAATCAGTTCAAATTAGCAAAGCACTGGCACTCAGTGGCAGGAATACAAGTGACTGCAAAGTGTTAAACACATCTGGAAAGGGATAATGACATCATCCTC-AGAATCTGTGGGGAGTTCACATAGCCAGTTAGGACCCATTCTTCTTTGACCCTATAAAGATTCTTT--AAAGAATAAATACCCTTAGTGGTTTTCTAGCCAGCTTGCCTGCTCATTTATCTTTGAG------------GACGACATGCCTTGTGGAGCTCCACAGGCCCCAGAGGGGTATGGATTCTGCATTTAAAAGTGCTGAAGCTGAGAGACTGGGTCTTGGTGGACCCCGAGAGGTCTGTTTCTC s panTro1.chr6 116669780 556 - 161576975 TTTCCTAGTTTCTCCTCCCGCTTCTC--TTTCTACTCTCTTGTTAGTATGTTAATTGTTTTCTCTCTCTC-----------------------------------------------------------AATCTTTTTTCCCCA---TTTCTTTGGCAGAGAT----------------------------------CCTTTTAC----TTGTCTTGGAAGAGTAGGTGAAGAGTTGTTTTTAGGACTCTTTAAAAGGGT--ACAGTATAGATGACAGTCTTGGCTAATGGTAACCAGATTCAGGGAGCCGGGGTCAGTGTAAGTTGGAATCAGTTCAAATTAGCAAAGCACTGGCACTCAGTGGCAGGAATACAAGCGACCACAAAGTGTTAAACACATCTGGAAGGAGATACTGACATCATCCTC-AGAATCTGTGGGGAATACACATCGCCTGT-AAGACCCATTCCTCTTTGACCCTATAAAGATTCTTT--AAAGAATAA-TACCCTTAGCGCTTTTCTAGCCAGCTTGCCTGCTCATTTATCTTTGAG------------GACAACGTGCCTCGTGGAGCTCCACAGGCCCCAGAGGTGTATGGATTCTGCATTTGAAAGTGCTGAAGCTGAGAGACTGGGTCTTAGTGGACCCCAAGAAGTCTGCTTTTC s mm5.chr1 63860530 611 - 195203927 TTCCCTAATTATTCTTCCTGTTCCACTTTTTTTGCTATTTTAGAAGTAGGGTGACTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCTTCTTTTTTCCTTC---TTTCCTTCTTTCTCCTTTCCTGCCTCCCTCTTCCTCTCTTCCTGATGTTGTCTTTGACATTTTTGTTTTGGAAGAACAGATGACAAGCTGTGTTTAAGACTCTATGAGAGGGT--ACAG-ATGGATGACAATCTTTGATAATGGTGACCAGAATTAGGA-------------------------TAAATTAAATGAAGTAAACATTGTCCCCCAGTGATAGGA--ACAAGTGACCAC-AAGTGTTAAACAGATCTGGAATGGGATTCTCACCTCATCTCCAAGATTCTGCAGGGAATACACACTGCCTA--GAGACCCATTTCCCCCTGACCCTATAAAGATTTTTT-AAAAGAGTAA-CGTCCTAAGTGGTTTTCTGGCCTGATTGCCTGCTTGTTATTCTTTGAGAGAAAGGAGGAAGGCAAC-TGCCT-GTGGCGCCTCACAATCTCCAGAGGTGTGTAGATTCTGCCCTGGACAATACTAATCC-------------CCTGGTGAATGC-------------TTTC s rn3.chr13 66935291 525 - 111348958 TTCCCCTCCCTCTCCTCTCCCTCTCT--TCTTTCTCCTTCTCTCCTTCTTTCCCCTTTCCTGCCTCCCTC-----------------------------------------------------------TCCCTCTTTCCCTGATGTTTTCTTTGACAGACAC------------------------------------TT--------TTATTTTAGGAGAACAGATGACAAGCTCTGTATAAGATTCTATGAGTGGGT--ACAG-ATAGATGACAATCTTTGCTAACGGCGACCAGAATTAGG-------------------------ATAAATTAAATGAACTAAACATTGTCCCACAATGATAGGAACACAAGTGACCAC-AAGTGTTAAACAGATCTGGAAAGGGATTCTGACGTCATCCCC-AGAATCTGCAGGGAATTCATACTGCCTA--GAGACCCATTCCCCCCTGACCCTATAAAGATTTTTTTAAAATAGTAA-TGCTTTAAGTGGTTTTCTGGCCAGCTTGCTTGCTCATTTATCTTTGAGAGAAAGGAAGACGGCAACCTGCCT-TTGGAACCTCACAACCTCCAGAGGTGTGTGGATTCTGCATTTGAAAGTACCAAGCC-------------CTTGGTGAATGCTTCTCTCTCTCTCTCTC s canFam1.chr38 5547229 535 + 26492144 TTTTCCAGCTTTTCCTT---TTTTTC--TATTTGCTATCTTGGTAGGAAGTTAATTGTATTTCCTCTCCC-----------------------------------------------------------AACCTTTTCTCCCCG---TTTCTTTGGCAGACAT---------------------------------------TAC----TTGTCTTGGAAGAACAGATGAAGAGCTGTTTTTAGGACTCTTTGTAAGGGTACACAGTATAGATGACAGCCTCAGCTAATGGTAACCAGAGCCAGGGAGCTGGGGTCAGCCG--------------------TAGGAAAGCACTG----TCAGTGGCAGCAATATAGGTGACCATAAAGTGTTAAAGACATCTGGAAAGGGATTCTGACATCATCCCC-AGCATCTGTGGGGAATACATACAGCC----GTAGACCATTCCTCTTTGACCCTATAAGAATTCTTT--AAAGAGTAA-TGCCCTGAGTGGTTTTCTGGCCAGCATGCCTGCTCATTTATCTTTGAGGAGATGGAAGGAGACAACCTGCCTGTGGGAGTTCCATGGGCCCCGGAGGTGAATGGATTCTGCATTTGAAAGTGCTGAAGCTAAGAGACTGGATCTTAGGGGACCCCAAGGGATCTGCTTTTC a score=113466.0 s hg17.chr17_random 252644 333 + 2618010 CTCTACTCA-TTGTTCCTTT----TTTTCCCAACAGCTGGCATT----GCTGTTTAAATGGGTTGTTCTTTGCTGTTTTAAG-TTGTTTCATAGTGGTGTGTCAGGATTTGGGTTTTCTTAATACTTTCCAAGCTGGTGACTTGAGTGGTGGTTAGGGAGGAAATGTTTTAGGGCTGTTCTGGAGCTATTGAGGTCAG---GTGTCTAGAT-ACTCCCAGCTTGTCTGTT--GAGGAGAATGCTGTTCTCATTGTGCTGCCTTTGGTGGTGCTGTGTGTGGCTCTTTAGATGTGCATGGAGGTGAGCTGGGGGAGTTAATGAGATCTTTTTTAGGTGCTTTTGATAAAG s panTro1.chr6 116670336 333 - 161576975 CTCTACTCACTTGTTCCTGT----TTT-CCCAGCCGCTGGCATTT---GCTGTTTGAATGGGTTGTTCTTTGCTGTTT-AAG-TTGTTTCATAGTGGTGTGTCAGGATTTGGGTTTTCTGAATATTTTCCCAGCTGGTGACTCGAGTGGTGGTTAGGGAGGAGCTGTTTTAGGGCTGTTCTGGAGCTGTTGAGGTCGG---GTGTCTGGGT-ACTCACAGCGCGTCTGTT--GAGGAGAATGCTGTTCTCATTGTGCTGCCTTTTGTAGTGCTGTGTGTGGCCCTTTAGATGTGGGTGGAGGTGAGTTGGGGGAGTTAATGAGATCTTTTTTAGGTGCTTTTGATGAAG s mm5.chr1 63861141 301 - 195203927 CTCTATTCA-TTGCCCCTATACAACTT-CCTGGGATCCAGCATTGGTAGCTCTTTCAGTGGACCACTCCTTTCTGCTA-AAG-TTGCCTGGCAGTGGTG----------CAAGTTTTCTGGTTGCTTTGCTGGCTTGTTACTTGAGTGGTAGTTAGGGAGAGGCT------AGACT------GAGCTTTTGAGACTA----GTGTCTTGATCCCTTGTAGATGATCTGTT-----GAGAACTTTGTCTTCACTCTGCCACCTTTTGTGGCACTGTATGTGGTTCTCGAGATGAGAATGGAGATGAACTGGAG------------TCCTTTGTTGGTG-TTTTGGTAAAG s rn3.chr13 66935952 284 - 111348958 CTCTATTCA-TTGCCCCTATACAACTT-CCTGGGAACCAGCATTGAA-GTTCTTTCA----GTTCTTTCCTGCTGCTG-AAG-GTGTCTGGCAGTGGTG----------CAAGCTTTCTGGTTGCTTTTCTGGCTTTTTACGTGAGTGGTAGTTAGGAAGAGGCT------AGACT------GAGCTTTTGAGACTA----GTGTCTGGAT-CCTTGTAGATGATCCCTT-----GAGAACTTTGTCTTCACTCTGCCACCTTTTGTGGTACTGAGTGTGGTTCCTGAGATGAGAATGGAGATGAACTGGAG------------TC------------CTTTGGCAAAA s canFam1.chr38 5547764 327 + 26492144 CTCTGCTCA-TTGTCCCTACGAAACTTTCCTGGCAACCGGCATT----GCTGTTCAGATGGACTGTTCTCTGCTACTT-AAGTTTGTTTGGCAGTGGTGTGTCAGGATGCGGGTTTCCTGAATGCTTTCCCAGCTGGTTGCTTGAGCGGTGGTTAGAGTGG----------GGACTTCT---GAGCTGCTGAGGTTGGCTCCTATCTGGAT-GCTCACAGAGGGACCCGTGGGGGAACACCTCTGTCTTCATTCAGCTGCCCTTGGTGGTACTGGTGGTGGCTCTTGAAGTATAGATAAAGGTGAGTTGAGG--AATGATAAAGCCTATTTTTGTTTCTTTTGGTGAAG a score=1299.0 s hg17.chr17_random 252977 3 + 2618010 TAG s panTro1.chr6 116670669 3 - 161576975 TAG s rn3.chr13 66936236 3 - 111348958 TAG s canFam1.chr38 5548091 3 + 26492144 TAA a score=3218.0 s hg17.chr17_random 252980 16 + 2618010 CCTGCA-CTACAGGATT s panTro1.chr6 116670672 16 - 161576975 CCTGCA-CTACAGGATT s canFam1.chr38 5548095 17 + 26492144 CCTACAGCTACAGGATC a score=3803.0 s hg17.chr17_random 252996 11 + 2618010 CACTGTGACTT s panTro1.chr6 116670688 11 - 161576975 CATTGTGACTT s rn3.chr13 66936910 11 - 111348958 CACTCCAACTT s canFam1.chr38 5548112 11 + 26492144 CAGTGCGACTT a score=42591.0 s hg17.chr17_random 253007 92 + 2618010 TTTTCCTTAACCTATGCATTTCTCTCTGCTAGCTTTTGCTGTCTTTCTCATGCCTTTGATTTTCCCAGCTCCTCTTAGTTGAATTAACCTAA s panTro1.chr6 116670699 92 - 161576975 TTGTGCTTAACCGGCACATATTTCTTTGCCAGCATTTGCTGTCTTTCTCTTGCCTTTGATTTTCCCAGCTCCTCTTGGTTGAATTAACATAA s mm5.chr1 63862194 91 - 195203927 CTTTTCTTAACCTGTG-ATATTTCTCCATGAGCTCTTGCTACATTTTTCATGCCTTTGGATTTTCTACCTTCTCTTGATTGAATTTACATAA s rn3.chr13 66936921 89 - 111348958 ---TTCTTAACCTATGCATTTTTCTCCATGAACTCTTGTTACATTTTCCATTCCTCTGAATTTTCTACCTTCTCTTGATCGAGTTTACATAA s canFam1.chr38 5548123 92 + 26492144 TTACCCTTATTCTTGCCATTCTTCTGTGCTAGCCATTGCCACCTTTTTTGTGCCTTTAATTTCCCCAGCTCCTCTTGGTTGAACTTGTGTAA a score=568.0 s hg17.chr17_random 253099 5 + 2618010 GTGCT s panTro1.chr6 116670791 5 - 161576975 GTGCT s canFam1.chr38 5548215 5 + 26492144 GACCT a score=40695.0 s hg17.chr17_random 253104 602 + 2618010 Ntgntgtggtttaaatgtgtcccccaaagtttatgtgctggaaactcaatcc-tcaatgcaacagttgggatgtggggcctaataaaatagg---cttcatgaatgagttaatgttgttattgtggtaatagattagtaatcacagagtgggcttattataaaacagagttcagccccttttgccctcttgctttcttgcactctcttttccttctgccttctgtagtgggatgatg---------------------------cagcaagaagacccttaccagatgcaggcccctcaaccttggacttcctaacatccagaactgttaagaaataaaatttattccttTCcttt---------------ccttttcttcctcctttcccttctcttcccttttcttcccttncnccnctcncctcncctctctctctccctccctccctccttccctcccttcctccttccctctttctctctttcccttccttcctttccttctttcccttccttcctttccttccct-ccttccctttttccctccttccctcctcccttccttttttctttccttccttttttcctttttataaattatgcagtctgtggtattcttttatagaagcatgaaatggacaaagac---- s panTro1.chr6 116670796 618 - 161576975 Ctgctatggtttaaatgtgtcccccaaagtttatgtgctggaaactcagtccctcaatgcaacagttgggatgtggggcgtaataaga--gggcccctcatgaatgagttaatgttgttattgtggtaatagattagtaatcacagagtgggcttattataaaacagagttcagccccttttgccctcttgctttcttgcactctcttgtccttctgcctgctgttgtgggatgatgtgtagaggaagatagtcttcctctacacagcaagaagatccctaccagatgcaggcctctcatccttggacttcctaacatccagaactgt-aagaaataaaatttgttccttttcttttcttttcttttctttccttttcttCCTCCTTTCCCTGCTCCTCTCTTCTCTTCCCTTCc--------cctc-cctccctctctctctccctacctccttctctcccttcctccttccctctttccct---tccttcccttcctttctttccttcccttccttccattccttcccttcctttcctccttccctccttccctcct--------------------tccttttttccttcttgtaaattatgcagtctgtggcattcttttatagcagcatgaaatggacaaagacaGGC a score=546.0 s hg17.chr17_random 253706 1 + 2618010 T s panTro1.chr6 116671414 1 - 161576975 T s mm5.chr1 63862287 1 - 195203927 T s rn3.chr13 66937016 1 - 111348958 T a score=24329.0 s hg17.chr17_random 253707 67 + 2618010 CCATTTTCAAGAGCAAGCACTTTTGTAGTTTCTGAGCGAACTATGACTGCAAAGGAAGTTCTATAGG s panTro1.chr6 116671415 67 - 161576975 CCATTTTCAAGAGCAAGCACTTTTGTAGTTTCTGAGCGAATTATGACTGCAAACGAAGTTCTGTAGG s mm5.chr1 63862288 65 - 195203927 CCACTTTTAAGATCAGGCACTTTTGCATTTCTGGAACTAATTATTAATG-AATGGTAGTT-TATAAG s rn3.chr13 66937017 65 - 111348958 CCATTTTTAAAATCAGGCTCTTTTGCATTTCTGGAACAAATTATTAATG-AATGGTAACT-TATAAG s canFam1.chr38 5548220 52 + 26492144 CCATTTTCAAG---------------ATTTCCTAAGCCACTTAGGACTGAAAAGTAAGCTCTATAAG a score=1024.0 s hg17.chr17_random 253774 12 + 2618010 TAGCCTCAGATC s canFam1.chr38 5548272 12 + 26492144 CAGCCTCAGATC a score=3194.0 s hg17.chr17_random 253774 12 + 2618010 TAGCCTCAGATC s panTro1.chr19_random 2375025 12 + 57627672 TAGCCTCAGATC s canFam1.chr38 5548272 12 + 26492144 CAGCCTCAGATC a score=1024.0 s hg17.chr17_random 253774 12 + 2618010 TAGCCTCAGATC s canFam1.chr38 5548272 12 + 26492144 CAGCCTCAGATC a score=65630.0 s hg17.chr17_random 253786 209 + 2618010 CACTACCTAG-GAAGCATGCTACCAAGCAGACCTAGGATCTAGGATTT--GATCAAGTGCTGGGCAACATGATACCTCTGCAA-TTTAGC-ACTTCCCTATATACCTCCAGTTGGCTCAGCCCATTAGGG-CTAAAACTACCCC-TCATATCCTAGTGTCTCTTGTAGGCAGAAGCCTTG-------CCTAAACCCTAAGCTGCTTGGCTCACATTCTGTCTT s panTro1.chr19_random 2375037 209 + 57627672 CACTACCTAG-GACACATGCTACCAAGCAGACCTAGGATCTAGGATTT--GATCAAGTGCTGGGCAACATGATACCTCTGCAA-TTTAGC-ACTTCCCTATATATCTCCAGTTGGCTCAGCCCATTAGGG-CTAAAACTACCTC-TCATATCCTAGTGTCTCTTGTAGGCAGAAGCATTG-------CCTAAACCCTAAGTTGCTTGGCTCACATTCTGTCTT s mm5.chr1 63862353 188 - 195203927 CACTCTCTAG-GAAG--------CCAGTGTACAGAGAAT-TAGAATTCCAGATCAAGTGCTAGGCAAC--TATA-------AA-TTTGAC-ACCTC-----------TTAGTTGA--CAGCTCGAGAGGGTTTTTAATTACCCT-TCACGTTAGTCTCTCTCCTGTTCATAGAAGCCTTACTTAAATCTTAAATCCTAAGTTACTTGACTTAGGTTCTGTCTT s rn3.chr13 66937082 193 - 111348958 CACTCTCTAG-GAAG--------CCACTGCACAGGGAGT-TAGAATTCCAGATCCAGTGCCAGGCAACCTGATGGCTCTGTAACTTTGAC-ACCTC-----------TCGGTTGA--CAGCCCAAGAAGG-CTTAGATTGCTCT-TCATGTC----TCTCTTCTGTTCACAGAAGCCTGACTTGAATCTTAAATCCTAAGCGACTTGGCTTAGGTTCTGTCTT s canFam1.chr38 5548284 213 + 26492144 CACCACCTGGTGACCCATGCTACCAACCA-ACCTGGGATCTGGCGTTCCAGGTCAGGTGCTGGACACCCTGAGGCCTCTGGGA-CTTGGCAATCTCTGTACATCCTTCCAGTTGGCCCAGCGCATCAGGG-CTAAAATTACCCCAATACATCCTAGTCTGTCTTACAGGCAGAGGTCTTG-------CCTAAATCTTAAGCTTCTTGACTACTATTTTCTATT a score=100.0 s hg17.chr17_random 253995 1 + 2618010 G s canFam1.chr38 5548497 1 + 26492144 G a score=100.0 s hg17.chr17_random 253995 1 + 2618010 G s panTro1.chr19_random 2375246 1 + 57627672 G a score=100.0 s hg17.chr17_random 253995 1 + 2618010 G s rn3.chr13 66937275 1 - 111348958 G a score=17870.0 s hg17.chr17_random 253996 110 + 2618010 -TGCTTTTTTTGT-------------------AGGGGGt--tcaaatatacac---aaaagaaat---atgttgaacctccatgcacccaacccgcagattaagcagttacctccattt------------ttccagatttgtttcatct s panTro1.chr19_random 2375247 110 + 57627672 -TGCTTTTTTTGT-------------------AGGGGGT--TCAAGTGTACAC---AAAAGAAAT---ATGTTGACCCTCCATGCACCCAACCCGCAGATTAAGCAGTTACCTCCATTT------------TTCCAGATTTCTTTCGTCT s rn3.chr13 66937639 123 - 111348958 -TGGAGTTTTTGCC----TGAGTCCAGGGGAGGGAAGGT--TCCAATATATATTCATAAATAAATGGAGTGCTGCTGCCCCCCACACCCAACAGTTAGATCAAACAGTTAC--------------------TGCCCACTTCATTTCATCT s canFam1.chr38 5548498 144 + 26492144 CTCTTGTTTtggtcgtggtggtggtggtggtggtggGGTTGTTACATATGCAC---AAAAGAAAT---AAAAGGAACCTCCATTTACCCAACACCTAGATAAAGCAGTTATCCCATTTTGTCTCAGATTTGCCCCAAATTTGTTTCATCT a score=40450.0 s hg17.chr17_random 254106 216 + 2618010 gcttcaATCTCCCTAAAAATTTATGTTTGTACAGGAAAGACTGAATAAATAGCTAATTCTCCACCCTACCTCTCATCTTAAGTcacttttcagagtagtaagttagtgacctagtaaccttccctctaatgaccagtagtttttttttctgaataccattatgaactc-ataga-ttattgtttgcatttgatgtatttcaggccattgcagtcttta s panTro1.chr19_random 2375357 216 + 57627672 GCTTCAATCTCCCTAAAAATTTATGTTTGTACAGGAAAGACTGAATAAATAGCTAATTCTCCACCCTACCTCTCATCTTAAGTcacttttcagagtagtaagttagtgacctagtaaccttccctctaatgaccagtagtttttttttctgaataccattatgaactc-ataga-ttattgtttgcatttgatgtatttcaggtctttgcagtcttta s canFam1.chr38 5548642 205 + 26492144 TTTCCCAATCCCCTGAATATTTACTtttatacaggaaagactggataaatacttaattccccacct---------tttaaaatcacttttcagaataatgaattagtagcctagtaacct--ccagaggtgaccaataaattttttttctgagtaccattatgaaatcaatagatttattg--tgtatttgatgtgtttcaacccattgcagtCttta a score=51829.0 s hg17.chr17_random 254322 285 + 2618010 ctgttttggatgcttacattgtctcatc-taggttaataattatctcttcaagttgactttcatgtctttttgacgtgatcctgttggactttgatggcttccttgctttctggcaaaacagatgttccaggatcaatatactgcaccatgcatggagtcagccgtttctctagggaaccttgattccttttagtagagaaCACAGTTTGAGGTCTTGGACTGAATGACTTTTGTGAACCT----CCTCTCCTGA---------------GACTACAGCCTGCATCCCTGCATATAGCCCGTTTG s panTro1.chr19_random 2375573 285 + 57627672 ttgttttggatgcttacattgtctcatc-taggttaataattatctcttcaagttgactttcatgtctttttgatgtgatcctgttggactttgatggcttccttgctttctggcaaaaaagatgttccaggatcaatatactgcaccatacatggagtcagccatttctctagggaaacttgattccttttagtagagaaCACAGTTTGAGGTCTTGGTCTGAATGACTTTTGTGAACCT----CCTCTCCTGA---------------GACTACAGCCTGCATCCCTGCATATAGCCCGTTTG s canFam1.chr38 5549095 299 + 26492144 ctgttttggatgctcaccttgtctcatcttaagtcagtcggtatcctctcaagttgaccctgatgttcatttgacatgaccctgtttaactttgataactttcttgctttctggcacaaa--atgttccaggctctatattcagcggcaggtgtggaatcagccatgtcttt-gggggccttgtttccttttagtagagaaCTCAATCTGGGCTCTAGGACTGAATTACTTTTGTGACCCCGCTACCTCACCCGAACCCCCCAGCCCCAGGCCTACAGCTTG---CTCTGCTCATAATCAGTATG a score=-1658.0 s hg17.chr17_random 254607 45 + 2618010 GAGCTCTTGCTGGGCACCAACA-----------------------------------------------------------GATCTCCTAA-----AACTGCTATATAG--- s panTro1.chr19_random 2375858 45 + 57627672 GAGCTCTTGCTGGGCACCAACA-----------------------------------------------------------GATCTCCTAA-----AACTGCTATATAG--- s mm5.chr1 63864151 109 - 195203927 GAGCTCTTTCCGGCCCCTGATTTGGAAATAAGTCTTGCTATGTAGTTCTGGATAGCCTTAGACTCCTAATTCTCCTGCCTTAGTCTCCTGAGTACTGACTCCCGCATGT--- s canFam1.chr38 5549394 46 + 26492144 GGATTCTTGCTAGGAATGAATA-----------------------------------------------------------G--CTCAACA-----ATCAGCCATAGTGGAG a score=35707.0 s hg17.chr17_random 254652 100 + 2618010 TTCTGCC-----------------------------TCACTCTTACAAAGATTCATCTCTTGAGAGTTTTGTGCTCTACCCCCAGATGTGGTCTTTCTGGTTCTGAAGCTTTTGCTTCAGTCACCCTGA- s panTro1.chr19_random 2375903 100 + 57627672 TTCTGCC-----------------------------TCATTCTTACAAAGATTCATCTCTTGAGAGTTTTGTGCTCTACCCCCAGATGTGGTCTTTCTGGTTCTGAAGCTTTTGCTTCAGTCACCCTGA- s mm5.chr1 63864260 127 - 195203927 TTTTGCCATGGTTCCATAGGACTTTAGTTTCTATTATCCCTCTTGTAAAGATCCA--TTCTGAGAGTATTGTACTTTAGCCCTAGCTCTGGTCTACTTGATTCTTACACTTTTGCCTCAGTTATGTGGG- s rn3.chr13 66939907 98 - 111348958 TTCTATT-----------------------------TTCCTCTTGTAAAGATTCA--TTGTGATAGTCTTGTGCTTTAGCCCTAGCCCTCGTCTTCTTGATTCTTTCACTTTTGCCTCAGTTATGTGGG- s canFam1.chr38 5549440 82 + 26492144 TTCTTCC-----------------------------TCACTCTGGTAAACATTCA--TCT--AGAATCTTGTGCTCTACCCC---------------TGGTTCTGACACTTATACTTCAATTCCCTCTGA a score=1821.0 s hg17.chr17_random 254752 4 + 2618010 ATTT s panTro1.chr19_random 2376003 4 + 57627672 ATTT s rn3.chr13 66940005 3 - 111348958 -TTT s canFam1.chr38 5549522 4 + 26492144 ATTT a score=91.0 s hg17.chr17_random 254756 1 + 2618010 T s canFam1.chr38 5549526 1 + 26492144 T a score=273.0 s hg17.chr17_random 254756 1 + 2618010 T s panTro1.chr19_random 2376007 1 + 57627672 T s mm5.chr1 63864536 1 - 195203927 T a score=91.0 s hg17.chr17_random 254756 1 + 2618010 T s rn3.chr13 66940009 1 - 111348958 T a score=271341.0 s hg17.chr17_random 254757 629 + 2618010 GCCAGCCCTATGCATGCTATACCTTGGATTGCCAACTTGCCCTCACTGAAGCCAGTTTCTCTGGTTAGAATAGTTGCCCAAACCCA----TGCCTAATA-CTCTAGTAAACAAGGTTCTACCTGGGCTTAGGTTAACTTTTGCTCCTTTGGGCCCTGTGTTCTACC-------AGCATTCCATTTATCTGAAACTCTCCCTCACC---TTAAGAACTTATCTGTTCTTTAATGATTTACTGCTGCTTCCTGGGCTCGAAAGAACCCAGTTCAGGAGTTTCTGTTTTAGTTTGAGATCTTATAGGCCTGTCTCATCAGGTTGGTGTCAGCCCAGCTAGGATTAGGC-AGAATTGGGTGGGGGCTGTAGTGCATTTTTGGCACAGCATGTACCTGTCTGACTAATTCTCTGTCTTTTCTTTCCTGTTG----CAATTCATGGGTCTTAGCATCTTCTGAATGGTGTTTAGTAGGTCATCCTGTTGATTTCCTGCTAGGGAGTAGCATACTCTGGCTCTGTACCATTGGCCAAGGGACTTAAGGATAGATGAAGGGCTGCAGTTTTGTTAAATGGAACAATATGAAGAGATGGCATTGTTAAAAAAAAAAAAAAGGCTTGGCAGCAGGGCCCATTTGAATGGTTGGTCCTTG s panTro1.chr19_random 2376008 627 + 57627672 GCCAGCCCTATGCATGCTATACCTTGGATTGCCAACTTGCCCTCACTGAAGCCAGTTTCTCTGGTTAGAATAGTTGCCCCAACCCA----TGCCTAATA-CTCTAGTAAACAAGGTTCTACCTGGGCTTAGGTTAACTTTTGCTCCTTTGGGCCCTGTGTTCTACC-------AGCATTCCATTTATCTGAAACTCTCCCTCACC---TTAAGAACTTATCTGTTCTTTAATGATTTACTGCTGCTTCCTGGGTTTGAAAGAACCCAGTTCAGGAGTTTCTGTTTTAGTTTGAGATCTTATAGGCCTGTCTCATCAGGTTGGTGTCAGCCCAGCTAGGATTAGGC-ACAATTGGGTGGGGGCTGTAGTGCATTTTTGGCACAGCATGTACCTGTCTGACTAATTCTCTGTCTTTTCTTTCCTGTTG----CAATTCATGGGTCTTAGCATCTTCTGAATGGTGTTTAGTAGGTCATCCTGTTGATTTCCTGCTAGGGAGTAGCATACTCTGGCTCTGTACCATTGGCCAAGGGACTTAAGGATAGATGAAGGGCTGCAGTTTTGTTAAATGGAACAATATGAAGAGATGGCATTGT--AAAAAAAAAAAAAGGCTTGGCAGCAGGGCCCATTTGAATGGTTGGTCCTTG s mm5.chr1 63864537 577 - 195203927 GCTAACCTTGTGCATGCTGTGCCTTGGGCTGCTGAGTTATCCT-GCTGGGGCCAGTTCCTCTGACTAGTATAGTTACTTCAGCCCACATGTGTCTAATAGACCTAGTAAGC-ATTTTCTGCTTTGACTGA-GTTAAGTTCTGCCATTGTAGACCCTGGATTCTATC-------AAGTTTCCATT--------AATCCCCCTCTCC--ACTAAGAACCTATCCAATCTT-----ATATACTGCTGCTTCTTGGGTTC------------TT----AGTTCCTGTGTCAGTTTGAGAACCT-TAGGTCTGGCTCATCAGCTTGGCTTTAGCCCAACTAGGATTAAGC-AGGAGCTGTGGAGAGTTGTAATGTACTTTTGCCATAGCATGTATCTGACTGATAAGT------TCTTTCCTTTCTTATAC----ATACCCACATATTTTAGCATCTTCAGGATGGTATTTGCTAGGCCATTCTGATGATTTTA-GTCAGGGACTAAGATTCACTGCCTCTGAACCATTGG-CAACGAGTGTCAGAATGGATAATGGGCTGCAATTTTGTTAAATG---TTGTATGAGGAGATAGTCTTGT-----------AAATGACTTGGCAGCAA---TCCTTTGTATAATTGCTTCTTG s rn3.chr13 66940161 584 - 111348958 GCTAGCCCTGTCCATGGTGTGCCTTGGGCTGTTGAGTTGTTCTTGCTGGGGCCAGTTTCTCTGACTAGTAAAGCTACTTCAGCCCACATGTGTTTAATAGATCTAGTAAGA-AGTTTCTGCTTTGGCTGA-GTTAAATTCTGCCATTTTAGACCCTGGGTTCTATC-------AAGTTTCCATT--------AATCCCTCTCTCC--ACTGGGAACCTATCTGGCCTT-----TTATACTGCTGCTTCCTGGGGTC------------TT----AGTTCCTGTGTCAGTTTGAAAACCT-TAGACCTGGCTCATCACCTTGGCTTCAGCCCAACTAGGATTAGGC-AGGAGCAGTGGAGAGGTTTAGTGTGGTTTTGACATAGCGTGCATCTGACTGATGAGT------CCTTTCCTTTCTTCTTGTACACAACCCACATATTTTAGCATCTTCAGGATGGTATTTGCTAGACCATTCTGATGATTTTATGTCAGGGACTAAGAGCCACTACTACCGAACCATTGGCAAACGAGTGTCAGAATGGGTAATGGGCTGTGGTTTTGTTAAATG---TTGTATGAGAAGATAGTCTTGT-----------AAGCCACTTGGCAGCAA---TCCTTTGAATAATTACTTCTTG s canFam1.chr38 5549527 604 + 26492144 GCTAGCTCTGTGTATGCTGTGCCTTGGACTGCACAGCTGCCATGGCTAGA--CAGCTTCCTTGGCTAGAATAGTTATCCCAGCCCCCTAATGCCTAATA-CCCCATAACAA-AGGTTCTGTCTGGGCTCAGCTTAACTTTTGCCCTTTTGGGACCTATGTTTTACCAGTTCCTAGCATTCCATTAATCTGATTCTCTCCTTCTCCTCTTCAAAATCTTATCTGGTCTTTAAAGATTGGCTGCTG---------------AAGAACCAGCTCTGGAGTTCCTGTTTCAGTTTGAGAACCTATAGGTCTGTCTTACCAGTTTAGTATCAGCCTACCTAGGATTAGGCAAGGTGGGGTGGAGGGTTAGAGTATGCTATTGGCACAGCATGTACCTTGCTCAC---TTCTTAACCTTTTCTTTCCTCTTG----TAAATCATGGGTTTCAGCATCTTCAGAATGGTGTTTCATAGGATATCCAGTTGATTTTCTGTCAGGGAGTAGGATGCTCTGGCTCTATACCATTGGCAGAGGG---------TAGGTAATAGGCTACCATTTTATTAAATGGAACAATATGGGAAGACGGCCTTGT----------GAACAGACTTGGCAGCTGGGCTCATTTAAATGGTTGGTTCTTg a score=3840.0 s hg17.chr17_random 255386 9 + 2618010 GCTCCTTTG s panTro1.chr19_random 2376635 9 + 57627672 GCTCCTTTG s mm5.chr1 63865114 9 - 195203927 GCTCTTGTG s rn3.chr13 66940745 9 - 111348958 GCTCTTGTG a score=93750.0 s hg17.chr17_random 255395 234 + 2618010 TTGATATAGGCAGATCCTTGATGGGAATTTGGAATGATCCCAAATATTGTAGATCACTGG--TAC----------ATCAAGTCA--------TCCTCAAGGTTGTCTGTGTAACAGTCTTGAATGATATTTTGTCAGTCTTTGGAGATTCTCTGTATAGGGTTTAATCATTTAGTTATTTCAGTTGAGCCTGTTTAGTTTC-TTTGCAAGGAGATAAGAAATGTGAAAGAGATGCAGACATTAGG---GAAAAAAAGT s panTro1.chr19_random 2376644 234 + 57627672 TTGATATAGGCAGATCCTTGATGGGAATTTGGAATGATCCCAAATATTGTAGATCACTGG--TAC----------ATCAAGTCA--------TCCTCAAGGTTGTCTGTGTAACAGTCTTGAATGATATTTTGTCAGTCTTTGGAGATTCTCTTTATAGGGTTTAATCATTTAGTTATTTCAGTTGAGCCTGTTTAGTTTCTTTTGC-AGGAGATAAGAAATGTGAAAGAGATGCAGACATTAGG---GAAAAAAAGT s mm5.chr1 63865123 227 - 195203927 TTGATATAAACAGATCCTTGACAAGAATATTACATGGTCTTAAGTCTGGAAGATC-CTGG--TAT----------ATCAATTAGTT------TTCTTGAAGTAGACTTTGGGAATGTCTTGAATG-TAGATTGTAGTTCTAAGAAG--TCTGCAAATAGGG-CTGGCCATTTTGTTAGTTTAG-TAAATTTGTTTAGCTTC-TTCATATGAAGATTCTAAATGTAAAGGAGGTGCAGACATCAGG---GGAAACC--- s rn3.chr13 66940754 229 - 111348958 TTGATATAAACAGATCTTTGACAAGAATATTACATGGTCTTAAATCTGGAAGATA-CTGGTATAT----------ATCAATTAGAT------TTCTTGAAGAAGACTTTGGGAATGTCTTGAATG-TAGATTGTAGTTCTAAGAGG--TTTGCACACAGGG-CTGGTCATTTTGTTAACTTAG-TAAGTTTGTTTAGCTTC-TTCATATGGAGATTCTAAATGTAAAGGAGGTACAGACATCAGG---GGAAACT--- s canFam1.chr38 5550372 252 + 26492144 CCCATGTTGGCACATCTTTGACAGGAATTTTGAATGGTCCCAAATCTGACAAATCACTGG--TACTCACTTCAGAGGCAAGTCACTTAATCACCCTCAAGGCTGACTGTGTAACTGTCTTGAATGCAGTTTTGTGGCTTTCTGGAGGTTCTGTGTATGAGGTTTAGTCATTTAATTATCTTAGTTTAGACTGCTTAGCTTC-TTTATGTGGAGATAATAAATGTGGAAGAGAAGCAGACATTAGGGTTGAAAAAC--- a score=248674.0 s hg17.chr17_random 255629 612 + 2618010 CAGGAGCCTTGTTTCCCCAT-CCTCTACTTGGGTTCTGGAACTAGAC----TCATAGGTGAGTAGTGAGGAGCTGG-GCCCAAGCACATTAATCCTAGATCTAGCTCTGCTTTGCCCTCGCTCCAGTTCTTGTATCAAATTCACTTCAAGCCACCCAGAGTAGTATGTAGAGGAGTCATTCAG----GACCATGCTCATACTTCGTTGTATCAAATGGGAGATCCAGTAATTTATAGCCTATTGTTTCTGGAGCCTGGAGATGGCTCTGCATAAGATTTGCCGAAGCAAATTTTATTACATTAGAAGA--GAACCTAGCTGGCTGCATCCTACACTGGAAGCTTTTAGATGCTAA--TAAGGAGGTCATGTAAAGGTCACAGAATGACTCTG------GAATCCATTCCCCGCCAA--GAAAGAATAATGACATTCTATGTTGGCCTCTTTTCATTTCCCTTTGGTTTTGAGTAATAAATTCTCTCCTCACTTCCC-----AGTCGAACTGTTTGGGAGTCTCTATTCCCTAGAAAGACTCTGGTCACATACCCATCAGATTAAATTAGGTGAAAACTCTTTGGCCTTCATGAATGTTGAAGGATTTCAAAGGGCTAATGGAAATTCTTCTAGAAGTAa s panTro1.chr6 130225168 612 + 161576975 CAGAAGCCTTGTTTCCCCAC-CCTCTACTTGGGTTCTGGAACTGGAC----TCATAGGTGAGTAGTGAGGAGCTGG-GCCCAAGCACATTAATCCTAGATCTAGCTCGGCTTTGCGCTCGCTCCAGTTCTTGTATCAAATTCACTTCAAGCCACCCAGAGTAGTATGTAGAGGAGTCATTCAG----GATCGTGCTTATACTTCATTATATCAAATCGGAGATCCAGTAATTTATAGCCTATTATTTCTGGAGTCTGGAGATGGCTCTGCATAAGATTTGCTGAAGCAAATTTTATTACATTAGAAGA--GAACCTAGCTGGCTGCATCCTACACTGGAAGCTTTTAGATGCTAA--TAAGGAGGTCATGTAAAGGTCACAGAATGACTCTG------GAATCCATTCCCCGCCAA--GAAAGAATAATGACATTCTGTATTGGCCTCTTTTCATTTCCCTTTGATTTAGAGTAACAAATTCTCTCCTCACTTCCC-----AGCTGAACGGTTTGGGAGTCTCTATTCCCTAGAAAGACTCTTGTCACATACCCATCAGATTAAATTAGGTGAAAACTCTTTGGCCTTCATGAATGTTGAAGGATTTCAGAGGGCTAATGGAAATTCTTCTAGAAGTAa s mm5.chr1 63865350 569 - 195203927 TTGGAGCCTTGTTTTC-----CCCTTTCTTATATTCTGTAACTGGAC-----CATTGGTA---AATGAGAAGATGG------------------CCAGATATAGCTTTGGTTTGTGTTTCCTCCAGTCCTT-TATTCAATTTACATCAGAGAACTCAGAGTAGAATATAGAGTGATAATTCAG-ACTGAGTTACCTTACACTTTATTGTAATGAACAGGAAACACAATGATTTATTGCC----ATTTCTGGAGTCTGGAGATGGCTCAGCATATGCTTTGTTGAAACAGACTGTGTAGCATTAGAAGA--GAGCTCAGCTAGCTACACCCAACCCC--CAGCCTTTAGATGCTAA-GCAAGAAAGTCATGTCAAGATGGCAGGATGACTAGG---ACTGAGTC---TTCCAGCTGACGGAGAGAATGATGATTTTCTGAGTTGGCCTTTTTTCATTTTCCTTTGGTTTTGAGAAATACGTTTTTTCTT--CTTCCCTAACTAGCTGGGTAGTTTGATAGTCCATATTTCCAAGAGAGACTAT--TCTTATAACCCTCAAACCCAATTTGGTGAAAATCATTTGGTCTTA------------------CAAGGGGCTAATAGAAAGTTTTCTAAAAGCAA s rn3.chr13 66940983 524 - 111348958 ATGGAGCCTTGTTTTC-----CCCTTTCTTAGATTCTGTAACTGGAC-----CATTGGTG---AATGAGAAGATGG------------------CCAGA--TAGCTTTGGTTTG--TTTCTTCCAGTTCTT------------TATCAGACAACTCAGAGTAGAATACAGAGTGATTATTCAG-ACTGAGTTACCTTACACTTTATTGTAGTGAACAGGAAACACAATGATTTATTGTC----ATTTCTGGAGTCTGGAGATGACTTAGCATATGCTTTGTTGAGACAGACTGTGTGGCATTAGAAGA--GAACTCAGCTAGAT-CACCCAGCCCC--CAGCCTTCAGATGCTAA-GCAAGAAAGTCATGTCGAGATGACAGGACGACTAGA----CTCAGTC---TTCCAGCTGAAGGAGAGAAGGATGACTTTCTGAGTTGGTCTTTTTTCATTTCCCTTTGGTTTTGAGAAATACATTTCTTCTTCCCTAACT-----AGCTGGACAATTTGATAGTTTGTAACCCTCAG---------------------------CCCAATTTGGTGAAAATCCCTTGGTCTTA------------------CAAGGGGCTAATAGAAATTTTTCTAAAAGCAA s canFam1.chr38 5550624 606 + 26492144 CTGGAGCCTTGCTTCCCCCCTCACCTATTTGGGTTCTGTGTTTGGACCTATCTATAAGTGAGTAATGAAGAACTAGAATCAAAATGAAGTCATCCCAAATCTATGTCT-CTCTGTGCTTGCTCCAGTACGTCAGCCAGATTT---------TACTTGGAGTAGGGTATAGAGTGATCACTCAGGACTGCAGTAACTTGCACTCCATTATATCAAATGGTAGACCCAGTAATTTATAGCCTATCATTTTAGGAGTCTGGTGATGGCTTAGCATAAGCTTTGCAGAAACAGAGTCTATTACGTTAGAAGAGTGCACCTCACTGGCTGCACCCA---------------AGATGCTAAAGTAAGGAGGCCACACAAAGGGAATAGGATGACCCTGGAAACTCAATC---CCCCACCTGAGAAAGAGAATAATAACACTCTGGCTTGGCCTCTTTTCATTTCCCTTTGATTTTGAGTAATAAATTCACTCTCTACGTCCC-----AGCTGAATGATTTGGGAATCTGTATTCCCTAGAAAGACTCTCTTCTCGCACCCATCAGACTGAATTAGGTGCAAACTCCTTGGCCCTAATGAATGTTGAAGGATTTCAAAGGACTAGTGGAAATTCTTCTAGAAGTAA a score=81756.0 s hg17.chr17_random 256241 966 + 2618010 ctgcaacctccgccttccgggttcaagcaattttcctgcctcagcctcccaagtagctgggattacaggtgtccaccaccatgcccaactaatttttgtatttttagtagagacggggtttcaccatgttggccaggctgatctagaacttttgacctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgatccaccgcgcccagTTAAACTTCAGTTTTTCATGTTCCATGCATTGGTCAGGGTCTTAGGGAGTGATTCATTCTAGCAGAACTCCCTGGATTTTAAGGCAGATGTTCCATTTATTAATTGACAAAGGAGGCATATTTCTCCCCTGGTAACCCAAAGATTTAGGTCATTTTCCCAGAGACTCCATTTCCACTGTGAGGGTTCTTGGAAAACTAAGCAGAGGATGAGGAAAAGTCTGTGAACAAGCTTGCTGGTCTCTCCCTGTCCTACAAAAGAGCATACCTCTTCTGTAACCAGAAGGCCCTTTTGATTAGTCAAGGCTGGACAGAGTGAGATT-GGGTGTGTGTGTNNGTNGTNNNGTG---------NTGTGNTTTGTGTGTGTCttgagacagggtctcactctgtcaccaaggctagagtgcagtggtgagatcagagctcactgcagcttccacttcctgggctcaagcgatcct-cctatttcagcctccagagtagctgggactatacgaatgttttaccacacccagttcattttctaattttttgtagagatgaggtttcactgtgttgctcaggctggtcttgaactcctggcctcacggaatcctcctgccttagtctcccagtgggctgggattataggtatgagccacctcacctgaccTGCGACGATTTTTCAATGATGTAATTTCTCTTTTACAGAGCCACCTAAGCTGAAGATTCCCTTGAGAACAA-GTACTGT-------------------------------------------------------------------------------CCCTAGTTTCCCAGTGCT s panTro1.chr6 130225780 1048 + 161576975 ctgcaacctctgccttccgggttcaagcgattttcctgcctcagcctcccgaatagctgggattacaggcatccaccaccaggcccaactaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctagaacttttgacctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtgatccaccgcgcccagTTAAACTTCAGTTTTTCATGTTCCATGCATAGGTCAGGGTCTTAGGGAGTGATTCATTCTAGCAGAACTCCCTGGATTTTAAGGCAGGTGTTCCATTTATTAATTGACAAAGGAGGCATATTTCTCCCCTGGTAACCCAAAGATTTAGGTCATTTTCCCAGAGACTCCATTTCCACTGTGAGGGTTCTTGGAAAACTAAGCAGAGGATGAGGAAAAGTCTGTGAACAAGCTTGCTGGTCTCTCCCTGTCCTACAAAAGAGCATACCTCTTCTGTAACCAGAAGGCCCTTTTGATTAGTCAAGGCTGGACAGACTGAGATTAGGgtgtgtgtgtgtgt------gtgtgtgtgtgtgtgtg---tgtgtgtgtCttgagacagggtctcactctgtcacccaggctggagtgcagtggtgagatcagagctcactgcagcttccacttcctgggctcaagtgatcctccctatttcagcctccagagtagctgggactatacaaatgttttaccgcacccagttcattttctaattttttgtagagatgaggtttcactctgttgctcaggctggtcttgaactcctggcctcacgggatcctcctgccttagtctcccagtgggctgggattataggtatgagccacctcacctgaccTGCAACGATTTTTCAACAATGTAATTTCTCTTTTACAGAGCCACCTAAGCTGAAGATTCCCTTGAGAACAACGTACTGTCCTGTGGTTTCATGGCCTTTCTTCCATTTGTGGTTCTTGCGAAGTGGAATTTAAATGGCATCTTATCAAGAGGGATAAACCCTAGTTTCCCAGTGCT a score=20538.0 s hg17.chr17_random 257207 122 + 2618010 GGAATATAGAAAATGGATGGACAAGTAAATCCCACTCAGCACCCATAGTCCAGGCATGGGGACCTCAACACACCTGAGCCCCAGACATCACCTTTCATTGCGAGTAGCTCTGAGATGACACT s panTro1.chr6 130226828 122 + 161576975 GAAATATAGAAAATGGATGGACAAGTAAATCCCACTCAGCACCCATAGTCCAGGCATGGGGACCTCAACACACCTGAGCCCCAGACATCACCTTTCATTGTGAGTAGCTCTGAGATGACACT s canFam1.chr6 3333184 115 + 79106041 GGAACAGAGAGGGAGGATGGACAAATGTGCCCCATTCAGTACCTACAACTGAGGCATG------CCAACA-GCTTGTGCCCCAGCTACCACCTTTCACGGCAAGTAGCTTTAGAGTGAGGCT a score=38512.0 s hg17.chr17_random 257329 95 + 2618010 ---------------------------------------------------------------------TCTGCTGTTCCCAATTCCAGCATTAATTGGATTAGATAGTTATTTT-ATGAAGAATTTTCATATGCCACAATCCTGACCATATCTTCAAGTGAACA s panTro1.chr6 130226950 95 + 161576975 ---------------------------------------------------------------------TCTGCTGTTCCCAATTCCAGCATTAATTGGATTAGATAGTTATTTT-ATGAAGAATTTTCATATGCCACAATCTTGACCATATCTTCAAGTGAACA s mm5.chr14 59130161 95 + 117079080 ---------------------------------------------------------------------TTTTCTGTAACCAATTCCAGTAATAATTGGATTAGATCCTTATTAG-ATACAGATTTCAATAAAGCAGTGATGTTAACTTCATGTTTAAGTGAACA s rn3.chr15 46693585 95 + 109774626 ---------------------------------------------------------------------TTTTCTGTAACCAATTCCAACAATAATTGGATTAGATCCTTATTAG-ATACAGATTTCAATAAAGCAGAAATGTTAACTTCATGTTTAAGTGAACA s canFam1.chr6 3333299 164 + 79106041 TTTGCTTTGTAAATATCACTGGCAACAGTTTATAACAGCAAATGAAGTAGTAAATACTTCATGAACAAACTCTCTGCTCCCAATTTCAGCACAAATTGGATTAGATAATCATTTTCATGAAGATTTC-CATATGCCACAATCCTAATCATATCTTAAAGTGAACA a score=4134.0 s hg17.chr17_random 257424 29 + 2618010 GAAAAATTCTATTAA---AAAGTCAACCTTCT s panTro1.chr6 130227045 29 + 161576975 GAAAAATGCTATTAA---AAAGTCAACCTTCT s canFam1.chr6 3333463 32 + 79106041 GAACAATTCCATGAAGATAGAGTTGATCCTTT a score=269397.0 s hg17.chr17_random 257453 3077 + 2618010 gtctcactctgttgcccagactggagtgcagtggtgcaattatggctcactgcagcctcaacctcctgggctcaagcaatcctcctgcctcagcctcacaagtagctgggactacaggtgcttgtcaccacacctcactaattttCCCATTTGTGTtatatgtggattccacaggactgacttcgaaaacttgagtatgcgtggattttggtatacacagaaatgggagagctggaactaatccccccatataccaagggacaaATTGTATCTGTTTCTA-CAATTATACAGTAGGAGACATTATGTTCCATGACAATGGTAATTTTTAACGACAGTTTTTAATTGAGTGAAATTACCATAAAAATAATaatagtagcagctaatatttactgagctgttactaggtgccTATAAATAGCATAGATTTTTAAATTCTCCATAATTCTTCCTTATTTCACTTAACCACCCTATCTTAAATTACTCAtgcttgcctcagtagcacacatacttaagttggaacaatagagagattggcacggcctctgtgaaagaatgacatgcaaatttgtgaagcattccatatttttTAAAAAAAAGAGAAAAAAATTACTCCCAGATTTTCACTGTGtttgtgcatatgaccttttgtttaggttgaattatatccaaaggtgaaatttccagaagtgagattactgtgagtcacagggcatgagcattcttattaccctcaatgtaaattgcaaagctttcaggcatggtggctgtcagcctgcaattccagcanctnnttggnnnagngcntgaggtgggaggattgcttgaggccaggagttggaggaggcagtataatgagtcactgtctgtaggatttaaaaaaaatttccaagctttatgctggaaggcttatatacattttaaacaccactaatactacaagaaaatggccatttcactgcaccttcgcccacacaggtattatAATTTAACAAGTTATTTTCTGTGTGATAAATGAAAGACCTCCTATTATTACTTTGTCACCCAttcttttttcttttttgagacacagtctcgctctgtcgaccaggctggagtgcagtggtgtgatctcggctcactgcaacctgtgcctcccaggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggaatatgccaccatgcctgattaatttttgtatttttagtagaaacgtggtttcaccatgttgatcaggctggtctcgaactcctgatctcgtgatctacccgccttggcctcccaaagtgcttgattacagctgtngnangccatgtgcccagccTATTTGTCACATATTTTATCTTCCCTTATGTTAGCTTATTAGCTTTAtttctttattgtcc---------tttttttttttttttgagatgaagtctcgctctgtctcctaggcttcagtgtagtggcacagtctcaactcactgcagccttgacctcctaggctcaggtgatccttccacctcagtagttgggactataggcacatgccactatgcctggccaattatttttatttttttatttttactagagaggaggtcttgctttgtttcttaggctggtctggaactcctagcctcaagcaatcccccnnncnaccanccccctcccaaagtactggtattataagcatgagccaccatgcctggGGTATCTGTGTCTTTTCCATTTATTTATAGAGTTACTTTGTCTTTTACTAATTCAATGATCTGTTTAATCttttattaaattataaaaatgataaatacttttaaataaGTGAAAAATGTCCTTCACTCTTTAGACCCATAATCTTATCTCAGGAAATAATTGCAGTTGAGAAAATGGGCCATATCCTTCAAGATACGTACATGGTGATTGAACATCACTTCATATTTTCATATTTCGTGGACATTTGTGCcaatacctattgatctatcttaatccttttcatggttgcataatattttattatatggatgtatcacaatttaccagtaccagtcaactgctggaggcatttaggcttcttctaatatttGCTTTGAGCTCTTTATATAATTAAAAATTAACCCCCTCagccaggtgtggcagctcacacctgtaatcccagcattttggaaggctgaggtgagagaactgcctgagtgtaggagatcaccaccaacctggtcaacatagtgacactttgtctctactaaaaa-ttaaaaaaaaaaaatgagctacacgttgcagtgcacacctgtagtccgagctactggggaggctaagactggaggatcacttgagtctagaaggttgaggctgcagtaagctatgatcacaccattgcactttagctttgctaagagcaagactgcatttcttaaacaaaataaaaaTTagatgggaatattgctcaagccctggaggttgaggctgcagttaactgtgattgcaccactgcagtccagcctaggtgatagagcaagaccctttctctaaaaataaaataaaataaaaaTTAACCTTCTATCATATTTCCCAGTAACACCTTCCCTCCTACATTTCTCCTAGAAGCCCTTAAATTTTGTTTTTCACATATCGTTTAAAACTTTTAAGTGCTGA----TGTCTGTGTCATCCCTCTTTTTTTTTTTTT----------AAATGTCTTTTTGTCACTTCTAGCTGGACCTACCATGAAAGACTTCTGAATCCAGGAAGAGAAACTGACTGGGCAACATGTTATTCAAGTACAAAAAGACTTGGACTGTAACTCAAAAATGATCAAATAATAGTGCATGCATCAAGTGCAATCGGAAGCTCTTCTGGAGAGGGAGAGAAGCTTCCAGTTAAGGTGACATTGAAGCCAAGTCCTGTAAGATAAGGAAGAGTTGTATGAgagtggggagggaagggggaggtggagggatggggattgggctgggatgggatggagtgagctgCCCAGGCAGGGAAACCAGCACTATACAGACCTGAACAATGAAGATGGCACATTTTGTTCAGGGAATGGTGAATTAAGTGTGGCAGAAATGCTTTGTAGAGACAGTAA s panTro1.chr6 130227074 3087 + 161576975 gtctcactctgttgcccagactggagtgcagtggtgcaattatggctcactgcagcctcaacctcctgggctcaagtaatcctcctgcctcagcctcacaagtagctgggactacaggtgcttgtcaccacacctcactaattttCCCATTTGTGTtatatgtggattccacaggactgacttcgaaaacttgagtatgtgtggattttggtacacacagaaatgggagagctggaactaatccccccatataccaagggacaaATTGTATCTGTTTTTATCAATTATACAGTAGGAGACATTATGTTCCATGACAATGGTAATTTTTAATGACAGTTTTTAATTGAGTGAAATTACCATAAAAATAATAATAGTAGCAGCTAATATTTACTGAGCTGTTACTAGGTGCCTATAAATAGCATAGATTTTTAAATTCTCCATAATTCTTCATTATTTCACTTAACCACTCTATCTTACATTACTCAtgcttgcctcagtagcacacatacttaagttggaacaatagagagattggcacggcctctgtgaaagaatgacatgcaaatttgtgaagcattccatatttttTTAAAAAAAGAGAAAAAAATTACTCCCAGATTTTCACTGTGTttgtgcatatgaccttttgtttaggttgaattatatccaaagatgaaatttccagaagtgagattactgtgagtcacagggcatgagcattcttattacccttgatgtgaattgcaaaGCTTTcaggcatggtggctgtcagcctgtaattccagca---ctttgg----gaggctgaggtgggaagattgcttgaggccaggagttggaggaggcggtataatgagtcacagtctgtatgatttaaaaaaaaTTTCCAAGCTTTATGCTGGAAGGCTTATATACATTTTAAACACCACTAATACTACAAGAAAATGGCCATTTCACTGCACCTTCGCCCACACAGGTATTAAAATTTAACAAGTTATTTTCTGTGTGATAAATGAAAGACCTGATATTATTACTTTGTCACCCAttcttttttcttttttgagacacagtctcgctctgtcgaccaggctggagtgcagtggtgtgatctcggctcactgcaacctgtgcctcccaggttcaagcgattctcccgcctcagccttctgagtagctgggattacaggcacatgccaccatgcccggctaatttttgtatttttagtagaaacgtggtttcaccatgttgatcaggctggtctcgaactcctgacctcgtgatctacccgcctcggcctcccaaagtgcttgattacagctgtg---agccatgcacccagccTATTTGTCACATATTTTATCTTTCCTTATGTTAGCTTATTAGCTTTATTTCTTTATTGTCCttttttttttttttttttttttttgaaatgaagtctcgctctgtctcctaggcttcagtgtagtggcacagtctcaactcactgcagccttgacctcctaggctcaggtgatccttccacctcagtaattgggactataggtacctgccactatgcctggccaattatttttatttttttatttttactagagacgaggtcttgctttgtttcttaggctggtctggaactcctggcctcaagcaatgcccc---ccacca-ccccctcccaaagtactggtattataagcataagccaacatgcctggGGTATCTGTGTCTTTTCCATTTATTTATAGAGTTACTTTGTCTTTTACTAATTCAATGATCTGTTTAATCttttattaaattataaaaatagtaaatacttttaaataaGTGAAAAATGTCCTTCACTCTTTAGACCCATAATCTTATCTCAGGAAATAATTGCTATTGAGAAAATGGGCCATATCCTTCAAGATATGTACATGGTGATTGAACATCATTTCACATTTTCATATTTCGTGGACATTTGTGCcaatacctattgatctatcttaatccttttcatggttgcatgatattttattatatggatgtatcacaatttaccagtaccagtcaactgctggaggcatttaggctccttctaatatttGCTTTGAGCTCTTTATATAATTAAAAATTAACCCCCTCagccaggtgtggcagctcatacctgtaatcccagcactttggaaggctgaggtgagagaactgcctgagtgtaggagatcaccatcaacctggtcaacatagcaacactttgtctctactaaaaatttaaaaaaaaataatgagctacacgttgcagtgcacacctgtagtcccagctactggggaggctaagactggaggatcacttgagtctagaaggttgaggctgcagtaagctatgatcacaccattgcactttagctttgctaagagcaagactgcatttcttaaacaaaataaaaaTTagatgggaatattgcttaagccctggaggttgaggctgcagttaactgtgattgcaccactgcagtccagcctaggcgatagagcaagaccctttctctaaaaataaaataaaataaaaaTTAACCTTCTATCATATTT-CCAGTAACACCTTCTCTCCTACGTTTCTCCTAGAAGCGCTTAAATTTTGTTTTTCACATACCATTTAAAACTTTTAAGTGCTGATGTCTGTCTGTGCCATCCCTCttttttttttttttttttttttAGAATGTCTTTTTGTTACTTCTAGCTGGACCTACCATGAAAGACTTCTGAATCCAGGAAGAGAGACTGACTGGGAAACATGTTATTCAGGTACAAAAAGACTTGGACTGTAACTCAAAAATGGTCAAATAATAGTGCATGCATCAAGTGCAATGGGAAGCTTTTCTGGAGAGTGAGAGAAGCTTCCAGTTAAGGTGACATTGAAGCCAAGTCCTGAAAGATGAGGAAGAGTTGTATGggagtggggagggaaaggggaggtggagggatggggattgggctgggatgggatggagtgggttgCCCAGGCAGGTAAACCAGCACTATACAGACCTGAACAATGAAGATGGCACATTTTGTTCAGGGAATGGTGAATTAAGTGTGGCAGGAATGCTTTGGAGAGACGCTCA a score=18696.0 s hg17.chr17_random 260530 88 + 2618010 TTTGCTTGTATGGAATTTTGCCCAAGAGACCTCATTACAGTTTCTAATT-TTTTGATGTTATCATG-CATCACTGCCCTTGTCAGATAGT s panTro1.chr6 130230161 88 + 161576975 TTTGCTTGTATGGAATTTTGCCCAAGAGACCTCATTACAGTTTCTAATT-TTTTGATGTTATCATG-CATCACTGCCCTTGTCAGATAGT s canFam1.chr9 26005534 90 + 53642819 TTTGCTTCTGTGGGATTCTGCCCAAGAGACCTCATTACAGTTCCCAATTCCTTTGTTGTTATAGTTCCATCACCATCCTTGTCAAATAGT a score=34342.0 s hg17.chr17_random 260618 376 + 2618010 ATCATGATCACAATAACATcaagcataatatttcattgattctcacaaaaacaggtgggtgccacagttatccccattatatgcacaaaatgatgaagacttggggttaatgagcgatttgcccaagctcacctgaatattaggactgagtcaaatgttagtctggtctgactttaatgcttgc-cttgttcatgagcaccatgcattgcctctcCTATTAAGTTAAGCAGGTAGACAGGTGAGAGAAGAGCCAGTGTGAtatcgggggaaattcacccctgatatttcatgtaggttcttttctattttccctgagtgtcagccagtctgagaaataaagggaaagagtacaaaagagagaaattttaaagctgga s panTro1.chr6 130230249 377 + 161576975 ATCATGATCACAATAACATcaagcataatatttcattgattctcacaaaaacaggtggatgccacagttatccccattatatgcacaaaatgatgaagacttggggttaatgagcgatttgcccaagatcacctgaatattaagactgagtcaaatgttagtctggtctgactttaatgcttgctctcgttcatgagcaccatgcattgcctctcCTATTAAGTTAAGCAGGTAGACAGGTGAGAGAAGAGCCCGTGTGAtatcgggggaaattcacccctgatatttcatgtaggttcttttctattttccctgagtgtcagccagtctgagaaataaagggaaagagtacaaaagagagaaattttaaagctgga a score=386944.0 s hg17.chr17_random 260994 4291 + 2618010 tgtccaggggagacatcacacgtcggcaggttccgtgatgccccccaagccgcaaaaccaacaagtttttattagtgattttcaaaaggtgagggagtgtacgaatagggtgtgggtcacagagatcacatgcttcacaaggtaataaaatatcacaaggcaaatggaggcagggcaagatcacaggaccacaggaccggggcgaaattaaaattgctaacgaagtttcgggcgcgcattgtcattgataacatcttatcaggagaaagggtttgagagcagacaacccatctgaccaacatttattaggcgggaatttccttgtcctgataaggctgggagcgccacgcgaacccagggcttatttcatcccttatctatgactgtaaaagacagccgtccccaaagcggccatttcagaggcctccccttagggatgcattctctttctcagggatgttctttgctgagaaaaagaattcagcaatacatctcctatttgcttttgaaagaagagaaatatggctctgttcaacccggcccactggcagccagagtttaaggttatctcccttgttccctgaaattgctgttatcctgttcttttttcaaggtgcccaggtttcatattgtttaaacaacttgtgcagttaacgcaattatcacagggtcctgcggggacattcatcctcagcttatgaagatgaccggattaa-gagattaaag-----acaggcatagaaaatcacaagggtanttgnnattgggg-aagtgataagtgtccatgaaatcttcacaatttatgttcagagattgcagtaatgacaggcctaagaaattatagaagtattaatttggggaactaataaatgtccatgaaatcttcacaatttatgttcttctgctgtggcttcagccagntccnctnctgtttggggtccctgacttcctgcaacaCgtttctctctactcacagacttctgaccaactgtgtgtgcagagtttctacaccagttctccaactctctggataccaaccgcgtatcccacaattccattctgacactacctagagttagcacagaacccacaggttaggggctcagtcccacaagaccaccctcacttcagatgccagttgcaagtcctaggttgtcacctgtattttgaccaaccagttagaaatcagggtttcccatgaccctcttgttgagtttaattatttactagaacaactcacagaacttagaaaaacaagttttttttcttttttttttaagagacagggcctcgctctgttgtccaagctggtgtgcagtggtgcaatcatagctc--attgaagcctcaacgtccagggctcaagtgattctcctgcttcagcctctcaagtagctggaattacagggttcccaccaccacatttggctaatttcttttattttttgtatagatggggtcttcttatgttgcccaggttggtctcaaattcctaggctcaagtgattccgcccacctctgcctcccaaagtgctgggattacgggcatgagccagcgcatctggccaccttattttctattactggctcaatgtaatggctccatctcaggaacagncaatgaaagagatgcacaggacaaggtaagtggggaggggcacagagcttccatgccctctgttgggcacactaccctcccaggacctccttgtgtttagcaacacagaagctctccaaaccctgctgtttgggtgtttatggaggcatngattgataaaatcactggccattggtagttaagtcaatctccagttccttttgcctcctggagttcagcaggtgaggctgaaagttccaagcctcaaaaaat-gttgttggggccaggtgcggtggctcactcctgtaatcctagcagtttggaaggctgaggcacatggaccacttgaggtcaagagtttgagaccagcctgaccaacatggtgaaaccccgtttctactaaaaataacaacagttagctaggcgttgtggcacatccctataatttcagctactcgggaggccgaggcaggagaattgcttgaacccgggaggtggaggttgtagtgagctgagattgtgccattgcactccagcctgggctacaagagccaaactccgttttaaaaaaaa-----------------aatgtggttgctttctctggcagctagccctcctcctgaagcagtctcggagcttgcagccaccctgttagctcaacagcatcccacatgcattcttaccatgctgcagatctgaaagaccttagaggcccttgtgtcaggaacctgggactaagactaaatatcaaaacagaaaatgctcctattacctctgtcacgaagggctttataagagctttggaagctctatgccaggaaccaggggcagagaccaaatgtatatttcttttcttatatcggagacagagtctcactctgccactgaggctggagtgcagtgatgtgatcatagctcacttcagccttgacctcctaggctaaagcaatcctcccaccttagcctctccagtagctggaactacaggcatgcatcaccatgtccagctgattttaatttt------gtaaaggcaggatcttcctattttccccaggctgatctctaactcttggcctcaagcaatccttcctctttggcctcccaaaatgttgggattacagatgggagcccccatacccACCaatcacaaggatctttataagagaatgaggtaggagagtcagaattagagaaagtgatgtggtaatggaagaagaggtcagagagggagatttgaagatgctgcacttctggccttgaatatggagtcacgaggtaagtcaaggaatggaggtggcttctagaagctggaaaaggcaaaggagcacattctgtctagagcctcccccagaaggaatgcagcctctctgacaccttgactttagccttgatagacctagttgggcttctggcccccagaactgtaagatggtagatttgtggtgtttgatgccactaaatgtagggtactttgttgtagcaacaacaaaaaatgaacaTGAAGCTGGGACCTCATGTTAcagttgctcacgcctgtaatcccagaactttaggaggctgaggtgggaggatcgcttaagcccaggagcttaagaccagcctgggcaacataatgagacctcatgtctaaaaaaaaatttttttaaaggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggagggtggatcacgaggtcagaagttcaagaccagcctagccaagatggtgaaaccccatctctactaaaaatacaaacattagccaggtgtggtggtgggtgcctgtaatcccagctacttgggaggcagagaatcacttgaacccaaaaggcagacattgcagtgagccaagatcgcacccttacacttcagcctgggcgaccaagactccgtctcaaaaaaaaaaaaaaaaaaaaa--------gccatgtgttgtggcatgcagctgtagtctcagttcctagggtggctgaggcgggaggattgtttaagcctgggaggttgaagttgctgtgagctgtgattgcaccagtgtactccagcctgggcaataaagcaagaccttgtttcaaaaagaaagaaataaatgagcatggtgggaatggggacagatggcagtgttaagtagagtggtca-gggttggcctcataagtgaatattgagcaaaa-gtttgaagcaggtgatggagctggccaaggtgctgagggaagagcattgtaggctgagtcaacaggataaaggcattaggaggaaactctctggtgtgtctgaggctctggaaggaggccagtggagcaaagagatagagggagcgaagtcagcgaggaggccagggagttgctgggctgggatcggtacagatcgtgtaagccctgggacgctattgctggggctttggcttttactctgactaaaatgggaaccaccaagggcttctgagcagagaggcgacatgatccgtctcctgatttaaaagcacgacctggctgccgagttgagaaagactatgggaagatttgggtggaagcatgggggccaagctgtggcaacatcccggtgggagatgatagtgatcctgacggggttcatggtggtggtgagagatggttagagcctggatacatgttgaagtcagtcagtaggatttcctgacagactggatgtgagctgtgagagaaggcagtggtcaaggttgaGTTTGAT s panTro1.chr6 130244088 4324 + 161576975 tgtccaggggagacatcacatgtcggcaggttccgtgatgccccccaaggtgcaaaaccaacaagtttttattagtgattttcaaaaggggagggagtgtatgaatagggtgtgggtcacagagatcacatgcttcacaaggtaataaaatatcacaaggcaaatggaggcagggcaagatcacaggaccacaggaccggggcaaaattaaaattgctaatgaagtttcgggcacgcattgtcattgataacatcttatcaggagaaagggtttgagagcagacaacccatctgaccaaaatttattaggcgggaatttccttgtcctgataagcctgggagcgccacgcgagcccagggcttatttcatcccttatctatgactgtaaaagacagccgtccccaaagcggccatttcagaggcctccccttagggatgcattctctttctcagggatgttctttgctgagaaaaagaattcagcaatatttctcctatttgcttttgaaagaagagaaatatggctctgttccacccggcccacaggcagccagagtttaaggttatctcccttgttccctgaaattgctgttatcctgttcttttttcaaggtgcccaggtttcatactgtttaaacaacttgtgcagttaacgcaattatcacagggtcctgcggggacattcatcgtcagcttacgaagatgaccggattaaagagattaaagtaaagacaggcataggaaatcacaagggtatt---gattgggggaagtgataagtgtccatgaaatcttcacaatttatgttcagagattgcagtaatgacaggcctaagaaattatagaagtattaatttggggaactaataaatgtccatgaaatcttcacaatttatgttcttctgccgtggcttcagccggtccctcc---gtttggggtccctgacttcccgcaacaCgtttctctctactcacagacttctgaccaaatgtgtgtgcagagtttctacaccagttctccaactctctggataccaaccgcgtatcccacaattccattctgacactacctagagttagcgcagaacccacaggttaggggctcagtcccacaagaccaccctcacttcagatgccagttgcaagtcctaggttgtcacctgtattttgaccaaccagttagaaatcagggtttcccatgaccctcttcttgagtttaattatttactagaacaactcacagaacttagaaaaacagggtttttttcttttctttttaagagacagggcctcgctctgttgtccaagcttgtgtgcagtggtgcaatcatagctcccattggagcctcaacctccagggctcaagtgattctcctgcttcagcctctcaagtagctggaattacagggttcccaccaccacatttggctaatttcttttattttttgtatagatggggtcttcttatgttgcccaggttggtctcaaattcctaggctcaggtgattccgcccacctctgcctcccaaagtgctgggattacgggcatgagccagcgcatctggccaccttattttctattactggctcaatgtaatggctccatctcaggaacagccaatgaaagagatgcacaggacaaggtaagtagggaggggcacagagcttccatgccctctgttgggcacactaccctcccaggacctccttgtgtttagcaacacagaagctctccaaaccctgctgtttgggtttttatggaggcat-gattgataaaatcattggccattggtagttaagtcaatctccagttccttttgcctcttggagttcagcaggtgaggctgaaagttccaagcctcaaaaaatcgtagttggggccaggtgcggtggctcactcctgtaatcctagcagtttggaaggctgacgcacatggaccacttgaggtcaggagtttgagaccagcctgaccaacatggtgaaaccccgtttctactaaaaataacaacaattagctaggcgttgtggcacatccctgtaattccagttactcgggaggctgaggcaggagaattgcttgaacccgggaggtggaggttgcagtgagctgagattgtgccattgcactccagcctgggctataagagccagactccgtttaaaaaaaaactctgttgctttaaaaaaatgtggttgctttctctggcagctagccctcctcctgaagcagtctaggagcttgcagccaccctgttagctcaacagcatcccacatgcattcttaccatgctgcagatctgaaagaccttagaggcccttgtgtcaggaacctgggactaagactaagtatcaaaacagaaaatgctcctattacctctgtcacaaagggctttataagagctttggaagctttatgccaggaaccaggggcagagaccaaatgtatatttcttttcttatatttgagacagagtctcactctgccactgaggctggagtgcagtgatgtgatcatagctcactgcagccttgacctcctaggctaaagcaatcctcccaccttagcctctccagtagctggaactacaggcatgcatcaccatgtccagctgattttaattttaattttgtaaaggcagggtcttcctattttccccaggctgatctctaactcttggcctcaagcaatccttcctctttggcctcccaaaatgttgggattacagatgggagcccccatacccACCaatcacaaggatctttataagagaaggaggtaggagagtcagaattagagaaagtgatgt---aatggaagaagaggtcagagagggagatttgaagatgctgcacttctggccttgaatatggagtcacgaggtaaatcaaggaatgggggtggcttctagaagctggaaaaggcaaaggagcagattctgtctagagcctcccccagaaggaatgcagcccctctgacaccttgactttagccttaatagacctagttgggcttctggcccccagaactgtaagatggtagatttgtggtgtttgatgccactaaatgtagggtactttgttgtagcaacaacaaaaaaTGAACATGAAGCTGGGACCTCATGTTAcagttgctcacgcctgtaatcccagaactttaggaggctgaggtgggaggatcacttaagcccaggagcttaagaccagcctgggcagcataatgagacctcatgtctaaaaaaaaattttttaaaaggctaggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggagggtggatcacgaggtcagaagttcaagaccagcctagccaagatggtgaaaccccatctctactaaaaatacaaacattagccaggtgtggtggtgggtgcctgtaatcccagctactcgggaggcagagaatcacttgaacccaaaaggcagacattgcagtgagccaagatcacacccttacacttcagcctgggcgaccgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaagccatgtgttgtggcatgcagctgtagtctcagttcctagggtggctgaggcgggaggattgtttaagcctgggaggttgaagttgctgtgagctgtgattgcaccagtgtactccagcctgggcaataaagcaagaccttgtttcaaaaagaaagaaagaaatgagcatggtgggaatggggacagatggcagtgttaagtagagtggtcaagggttggcctcataagtgaatattgagcaaaaagtttgaagcaggtgatggagctggccaaggtgctgagggaagagcattgtaggctgagtcaacaggataaaggcattaggaggaaactctctggtgtgtctgaggctctggaaggaggccagtggagcaaagagatagagggagcgaagtcagcaaggaggccagggagttgctgggctgggatcggtacagatcgtgtaagccctgggacgctattgctggggctttggcttttactctgactaaaatgggaaccaccgaggacttctgagcagagaggcgacgtgatctgtctcctgatttaaaagcacgacctggctgccaagttgagaaagactatgggaagatttgggtagaagcatgggggccaagctgtggcaacatcccgctgggagatgatagtgatcctgaccgggttcacggtggtggtgagagatggtcagagcctggatacatgttgaagtcagtcagtaggatttcctgacagactggatgtgagctgtgagagaaggcagtggtcaaggttgaGTTTGAT a score=15101.0 s hg17.chr17_random 265285 78 + 2618010 TCTGATTGAATTATTAAGTAATTTTAAAAAACACTACTGCTTTTCCCAATCCTACCAAGTAAAGGATGCTAGATAAAA s panTro1.chr6 130248412 78 + 161576975 TCTGATTGAATTATTAAGTAATTTTAAAAAACACTACTGCCTTTCCCAATCCTACCAAGTAAAGGATGCTAGATAAAA s canFam1.chr6 3341921 78 + 79106041 TCTTGTGAAATTCTTAAATGATTTTTGAAAATAATACTGTCTTTTCCAAACTTACCAACTACAGGAAGCTAGATTAAA a score=39771.0 s hg17.chr17_random 265363 480 + 2618010 GAAATCCCAAGTCAggccaggtacagtggctcacacctatagttccaacagtttgagaggcagagatgggagtatgttttaaggccatgagtttgagagcagcctgggcaacacagcaagacctcctctcta----caaaaataaaaaaaataaatttaataaaataaaataaatatagccaggcatgatggtatgtacctatggccccagttactcatgtggctgagatgggcagatctcttgattctaggagtttgaggccagcttgggcaacatagcaagtcttctctctctacaaaaatgaaaaaaatgcctgacatggtggtacttgcctgtattccncagnntnnnngggggncagnnctgnaggcanggancatctcttgagcccagttggtcaa-ggttgcagtgagctatgattataccactgcactccatcctgggtgacagagtgggaccctgtctcaaaatacaaatacaaaT s panTro1.chr6 130248490 476 + 161576975 GAAATCTCAAATTAggccaggtgcagtggctcacacctatagttccaacagtttgagaggcagagatgggagtatgttttaaggccatgagtttgggagcagcctgggcaacacagcaagacctcctctctaataacaaaaataaaaaaaataaatttaataaaataaaataaatatagccaggcatgatggtatgtacctatggccccagttactcatgtggctgagatgggcagatctcttgattctaggagtttgaggccagcttgggcaacatagcaagacttctctctctacaaaaatgaaaaaaatgcctgacatggtggtacttgcctgtattcccaggtat-----gggggcag--ctg-aggca-ggagcatctcttgagcccagttggtcaaaggttgcagtgagctatgattataccactgcactccatcctgggtgacagagtgggaccctgtctcaaaatacaaatacaaaT a score=66529.0 s hg17.chr17_random 265843 440 + 2618010 GAAATCTCAAGTCAGACCAGTCCCTTCTAGGCTATGTAGGCCTTGTAACCATACAGTTGCATGATCGGGTTTGTGTGGCTGTGGATGAGGAGACCCCTGTCCAATTGTTGGCTATGTAATCAGTTTATTTTTCAATATAGTAATcaaatatatttcatcatacttgatggtctcagatatgtgtggattttggaattccccttggaacaggttgtaacatcttattggctccataattCCATAATTTTTTTAA---TCTGATCAGTTTTTAATAAGATCGGAATTTATATTAGACTACTTAATCGGTTTTGTTAATGAGAAAATGAAATTGTGTTGTTTGCAT--TTTATCCAAGATGGGTGTCATATTGGGTAAATCTCATCAATACTTGAACAAATGCAAAATTAGAGCTTCTTTATCATGAAACACGATGTA--ATTCTTGAAG s panTro1.chr6 130248966 441 + 161576975 GAAATCTCAAGTCAGACCAGTCCCTTCTAGGCTATGTAGGCCTTGTAACCACATAGCTGCATGATCGGGTTTGTGTGGCTGTGGATGAGGAGACCCCTGTCCAATTGTTGGCTATGTAATCAGTTTATTTTTCAATATAGTAATcaaatatatttcatcatacttgatggtctcagatatgtgtggattttggaattccccttggaacaggttgtaacatcttattggctccataattCCATA--TTTTTTAAAAATCTGATCAGTTTTTAATAAGATCAGAATTGATATTAGACTACTTAATCGGTTTTGTTAATGAGAAAATGAAATTGGGTTGTTTGCAT--TTTATCCAAGATGGGTGTCATATTGGCTACATCTCATCAATACTTGAACAAATGCAAAATTAGAGCTTCTTTATCATGAAACACGATGTA--ATTCTTGAAG s canFam1.chr6 3341999 349 + 79106041 GAAATCTCAAGTCAGATCAGTTCCTCTTTGGC--------CCTTGCAATTCTACAACCATGCAATTGGGTTTGTGATGCTAAGGCTTAGGAGGCCT---------------CCACATAGTCGATTAAATT----------TAATcaaatttatttcatcatttttgataatcttatgtatatgtggtttgggggatt---ctttgaacagcttataacatctcattga-----------------tttttc-----cctcatcagttttga----------------------------------------ttaatgaggaaatgaaatTAAGTTGTTTGCATACTTTATCCAAGATTGGTGTCATATTGGCTAAGTCAAATCAATACTTGAGCAAATATGAAATTACAGCTTCTTTATCATGGAATATTAGGTATCATTATTAAAG a score=27046.0 s hg17.chr17_random 266283 326 + 2618010 AAGATGCCAtttcttttttttctttttttttttaagataagagtctttctcttgtcacccaggctggagtgcaatggtgcgattttggctcactgcaaccttcaccttctgggttcaagcaattctcctgccnntncagcnctcccgagtagctgggnttacaggtgcccgccaccatacccagnntnnatttttgtatttttagtagagatgggatttcaccatgttggccaggctcctctggagctcctgacctcaggcaatctgcctgcctcagcctcccaaaattcaaggagtacagatgtgaacaaccacgcccggccTCC s panTro1.chr6 130249407 320 + 161576975 AAGATGCCAtttcttttttttcttttcttttttaagataagagtctttctcttgtcacccaggctggagtgcagtggtgcgattttggctcactgtaaccttcaccttctgggttcaagcaattctcctgcct---cagc-ctcccgagtagctgagattacaggcgcccgccaccatacccagct--aatttttgtatttttagtagagatggggtttcaccatgttggccaggctcctctggagctcctgacctcaggcaatctgcctgcctcagcctcccaaaattcaaggagtacagatatgagcaaccacgcccagccTCC a score=5125.0 s hg17.chr17_random 266609 29 + 2618010 ATTTCTTTT---TTGTAGTCTTTAATAAACAG s panTro1.chr6 130249727 29 + 161576975 ATTTCTTTT---TTGTAGTCTTTAATAAACAG s canFam1.chr6 3342348 32 + 79106041 ATTTCATTTAAAAAATAGTCTTTAAAAAACAG a score=10625.0 s hg17.chr17_random 266638 66 + 2618010 CTGCTATCATTGCA---GACTTGCTGTTTAGGCACTTAGGAA-TTTTTCACTAGAAGGCAT---GTAAATAAA s panTro1.chr6 130249756 66 + 161576975 CTGCTATCATTGCA---GACTTGCTATTTAGGCACTTAGGAA-TTTTTCACTAGAAGGCAT---GTAAATAAA s canFam1.chr6 3342567 73 + 79106041 CTGTTATCATTTTACATTATTTGCTATTTAGGCATTTTGAAGTTTTTTCATTTGAAGACACAAAGAAAGTAGA a score=35218.0 s hg17.chr17_random 266704 205 + 2618010 GACCATGGGCAATTGTAATGAATTTCGCCTTCATTCTTTGA--CTACATGACTGTC-CCCAGAGCTGTAACTTTATTG--AATTTTTTAGAAGCCATTTAGCTAGCAACTGAGCCTAACCAGCCACTCACCGTCATTATTCAGTGCTCTTTTATTATTGTCTATTTCTCCTCCAACTTGGCTACACTCACAAAGTGATAAAAACTTGCAt s panTro1.chr6 130249822 205 + 161576975 GACCATGGGCATTTGTAATGAATTTAGTATTCATTCTTTGA--CTACATGACTGTC-CCCAGAGCTGTAACTTTATTG--AATTTTTTAGAAGCCATTTAGCTAGCAACTGAGCCTAACCAGCCACTCACCGTCATTATTCAGTGCTCTTTTCTTATTGTCTATTTCTCCTCCAACTTGGCTACACTCACAAAGTGATAAAAACTTGCAt s canFam1.chr6 3342824 201 + 79106041 GACTATGAGCATTTGTAATGGCTTTAGCATTCATAATTTGACTCTGCATGAGTGCCTTCCAGGGTTGCAGTTTTACTAGTGAAGTTTCAGAAGCCACTTAGCTAATGACTCAG-TTAACCAACCACCCAGTGTTATATCTCAGTGCTCTTTTGTT-TTCTCTACTCCTCCTCAAATTTAGTCAC-------AAGTGATAAAAACTTGCtt a score=29802.0 s hg17.chr17_random 266909 320 + 2618010 ttgttttctttccttttcagagacagcgtcttgctctgttgcttaggctacagtacagtgacatgatcatggttcactgtagcctcaaactcctgggctcaagtggttctctcacttcagtctcccaagtagctgggactacagacatgtgccaccatgtccaggtaattttttatcatagagacgggatcttgccgtgttgctccgactgggctcaaaactcctgacctcaagtgatcctcctgcctcagcctcccaaagtgctgggattacaggcaggcatgaccacctgtgcccagccCCCTATTATTATTATTTTA s panTro1.chr6 130250027 320 + 161576975 ttgttttctttccttttcagagacagcgtcttgctctgttgctcaggctacagtacagtgacatgatcatggttcactgtagcctcaaactcctgggctcaagcggttctctcacttcagtctcccaagtagctgggactacagacatgtgccaccatgtccagctaattttttatcatagagacgggatcttgccacgttgctccgactgggctcaaaactcctgacctcaagtgatcctcctgcctcagcctcccaaagtgctgggattacaggcaggcatgaccacctgtgcccagccCCCTATTATTATTATTTTA a score=105372.0 s hg17.chr17_random 267229 617 + 2618010 AAtaatagctttattaaaatat---tcacataccattcactttatttattgaaa-tctgcaattcagtaggttttagaatattcacagagctgtgcatcgatcaccacagtcacttttagaacctttcattactctatagagaaatccatacccctnnntagccactacctcctactctccccac-ctacctttgcccccagccttaggcaaccattgattaatttttttgtcactatagatttgcctaatctggaca---------aatagaattgtacaatatgtgatcttttg----tggctttttt-----------------------------------tccctcttaccacagtgttttcaaagttcctttatgtcatagtgtgtatcaatatttcattccttctatggc-----agtattccatggtagagacacactgcattttgtttatctgttcatcagttggtggatatttgggttgtt-tccatgtattccatgtattggtcattatgaataatgctgctatgaagattgttgtacaagtttttgtgtggacatatatttttatttttctgggatatatgcctaggagtgaaattgttgcattataggatgactgtacatttagccttttgagaaactgccagactgttttctaacgtggcta s panTro1.chr6 130250347 616 + 161576975 AAtaatagctttattaaaatat---tcacatatcattcactttatttattgaaa-tctgcaattcagtaggttttagaatattcacagagctgtgcatcgatcaccacagtcacttttagaacctttcattaccctatagagaaatccatacccct---tagccactacctcctactctccccacactaccttctcccccagccttaggcaaccattgattaatttttttgtcactatagatttgcctaatctggaca---------aatagaattgtacaatgtgtgatcttttg----tggctttttt-----------------------------------ttcctcttagcatggtgttttcaaagttcctttatgtcatagtgtgtatcaatatttcattccttctatggc-----agtattccatggtagagacacactgcattttgtttatctgttcatcagttggtggatatttgggttgttgtccatgtattccatgtattggtcattatgaataatgctgctatgaagattgttgtacaagtttttgtgtggacatatatttttatttttctgggatatatgcctaggagtgaaattgttgcattataggatgactgtacatttaaccttttgagaaactgccagactgttttctaacgtggcta s canFam1.chr6 3343289 650 + 79106041 aataacagctgtagtgagctgtaagtcac-taccatacactttacttctttaaagtatacaattcagtggtttttagaatatt--ccgagttgtgtatccattgccacaatcaatttgggagctttttattactctataaagaaacctgctatcct-------tccttgcatctacttctgccat---tcctctgtgccgtgccttcagcaaccactgcctta-ctttctgtctctatagatttgtctaatctggacattttaaattagtggaattgtacaatatgtggtcttttgtgtttggcttccttcactaagcatagtgttttattttattttattattattttttttagcatagtgttttaaaggttcatccatgttgtc-catgtaccaatatgtcttttcttttatggctggataatatttcattgtatggatataccacactttatttgttcattcatt-gttgatggacatttggtttatt----------tccacttttgggctattaggaaaattgctgatatgaacattcatgtacaaatttttgtgtggacgtatgttttcatttctttggggtatagatttaggagtgcaactgttgcatcatagggtgactgtatatttaacctttggagaaactgccagactgttttccaaagtggtca a score=15918.0 s hg17.chr17_random 267846 174 + 2618010 taccagttgggtgcaatggctcacacctgtaatcccagctactcaggaggctcagctaggaggatggcttgagcccgtgaattcaagaccagcctgggcaagatagtgaaaccccgtctTGATTTTTTAAAAATCCAATTAAAATGACAAGAAaagaaatacccaaacaaaatg s panTro1.chr6 130250963 174 + 161576975 caccagttgggtgcaatggctcacacctgtaatcccagctactcaggaggctcagctaggaggatggcttgagcccatgaattcaagaccagcctgggcaagatagtgaaaccctgtGTTGATTTTTTAAAAATCCAATTAAAATGACAAGAAaagaaatacccaaacaaaatg a score=11626.0 s hg17.chr17_random 268020 68 + 2618010 gttacacaattttatgttcccaccagtaatgtatgtgggttccaattcctccacatcttcactgaca--------t s panTro1.chr6 130251137 76 + 161576975 gttacacgattttatgttcccaccagtaatgtatgtgggttccaattcctccacatcttcactgacattttttttt s canFam1.chr6 3343939 63 + 79106041 gttgcaccattttatgttctcatcaacaacatat-cgggttccaa----tccacatcttcacccata--------t a score=73730.0 s hg17.chr17_random 268088 843 + 2618010 ttttttttctagataggggcttgctctgtctctcaggccgcagtgcaatgatgccatcacagttcactgcagccgtgacct-cccaggcacaagtgattctctcatctcagcctcctgggtagctgaaaattacaggtgtacgccaccatgcctggctaatttttagat-ttttctgtagtggtgggattttaccatgttgcccaggctggtctcatactcctggcctcaagtgatctgcccacctcagcctccctaagttctggaattacaggctgccaccatgcccggccttcaccaacatttgccattatctgtttttttTTTCTTCCTTTATACCTTAAAGCAGTATAAGAACAAGTGTCTTCAATTATAGGAAACAGtataatcccagggctttgggaggctaagacaggaagatgtcttgatgccaggagttttttttgttgttgttgtttttgtttttgtta---ttgttgttgttgtttttgAC--agtctcgctctgtcacccagggtggagtgcagtgatggggtccactgcaacctnccacncntcccaggttcaagtgattctcctgcctcagcctcccgagtaggtgagactacaggtacacgccactactgcccagctaatttttgtatttttgatagagtcagagtttcaccgtgttggccaggctggtctcgaactccagacttcaggtgatttgcctgccttagcttcccaaagtgctgcgattacaagcatgagccaccatgcccagcctgatgccaggagttttagactagcctgggcaacctagcaagaccttgtctctacagaatattt-aaaaattagccaaatgtggn s panTro1.chr6 130251213 846 + 161576975 ttttttttctagataggggcttgctctgtctctcaggccgcagtgcaatgatgccatcacagttcactgcagccttgacctccccaggcacaagtgattctctcatctcagcctcctgagtagctgaaaattacaggtgtacgccaccatgcctggctaatttttatatattttttgtagtgatgggattttaccatgttgcccaggctggtctcatactcctggcctcaagtgatctgcccacctcagcctccctaagttctggaattacaggctgccaccatgcccggccttcaccaacatttgccattatctg--tttttttTCTTCCTTTATACCTTAAAGCAGTATAAGAACAAGTGTCTTCAATTATAGGAAACAGtataataccagggcattgggaggctaagacaggaagatgtcttgatgccaggagttttttttgttgttgttgtttttgtttttgttattgttgttgttgttgtttttgacagagtctcactctgtcacccagggtggagtgcagtgatggggtccactgcaacctc---cacctcccaggttcaagtgattctcctgcctcagcctcctgagtaggtgagactacaggtacatgccactactgcccagctaatttttgtatttttgatagagtcagagtttcaccatgttggccaggctggtctcgaactccagacttcgggtgatttgcctgccttagcttcccaaagtgctgggattacaagcatgagccaccatgcccagcctgatgccaggagttttagactagcctgggcaacctagcaagaccttgtctctacagaatatttaaaaaattagccaaatgtggg a score=254374.0 s hg17.chr17_random 268934 2865 + 2618010 ggtgcctgtGTATAGTCTCTCTCCCTCTCtcttttttttt---tctaactttttgtgacatggtctggctctgtcacccaggctgaagtgcagtggtgtgatcatggctcactgcagcctgaaactcctgggatcaagtgatcaatccntncccnaccntcatcctaccaagtagtagggaccacaggtgtatgccacccaggtcttgctatgttgtccaggctggtcttgagctcctgg-cctcaagcaatcctctcaccttggccccccacagtgcaaggattacaggtatgagccaccatgcctggccCCTACCCTGCCTACTGAGAACCAAAGGAAGGATCCAAATTCTCCTTAGCTCAACTCGAGCCATTTCCTGATTGCTTCATCAGCGAGGAGCTGGTTATTGGGCTGTCCAGGCCTCCCAAGCAGCACAGAAATGAGGTGAGGGAGTTTTCCTGTTGCTCCACTCTGTAAGGAGTTGGAGGGTGATGTTTACTCGTTTGCAGAGAGAGATGCCTTGTAGGCACCTCAGGATGGAGAGGGCCCTGATTCCAATGTCCtttttttcttcagaaacaggaccttgccctgtcact-aggatggagttcagtggtcctatcatggctcattatagcctcaaactcccaggctcaagcaatcctaccatgtcagccttcccagtagctgggactacaggtaagcatcgtgacactcagtgaattttgtttttattttgttgtagagatgggacctcagtatgttgccatggctgaccttgaactcctgcactcaagggattttcctaccctggcctcccaaagtattggtattacaggcatgagccattgtgcccAccgtctctggttcttaaccttctgcctccctcttccagttttaaagaatgcttgtaattacatgggctctcctagatactccaggataatcttgttttaaggacagctgatgagcagcattaattttatctgcactcttaattcccccttcctatgtaaTTGTGCTGTGTAACATAGGACATGAGCAATTGGTGGCGGTGGGGGTTATTACTTTGGCCACCACagtaactattttatgccaggtactcagctaagcactggtgaatgaagcatgaataacacacactccctaatctccatccattcatgggaggagCACTTCACCTGCCATGCTCCTGAGAATctcgggagtcatagaagtcttctatgaggaggtgatgccaaagcggacaagtgacagaggagtcaaagctagctaggaagagagtagaggtttaaggggaagcatattataagcagaggatattacccacttcagagactcccagaggagaaagagtgtgcgttcaaggggcagatgaggctcagttggactccatagcagatgaaatggagaggggcaagcagtgaggCTGCCTTGCAAGGCAGGGCAGAGCAGGGGCTGTTAAGGAGTTTGGACTTAATCCCTGAGGCAAGGAGAAGTGATGTAAATGGGGGAGTAACATGATGAGATTCATAGATTAGAGACATGGCTCAGGCTGCTGTAGAGAAGGCACCAGGAAGAGCAGATGGCTCAATGTGTGTGCAGAAGACCTCTCCCTGAGTTTAGGGAGAGGTTTTTAAAACAGAAGAAGTTTGAGTAATTTAAATGATGATGGGAAGGAGCTAAAAGTGGGGGATAGGTTAAAGATACAGGAAAGTGGGAGGAAGAACTGACAAGTGAGGTTCCAGAGAGGGCAGGAGAAGAGGAGATTCCCATAGGGGGATTAACACtttcttttcttttttctttctaagacagggtctcactctgtcgcccaggctggagtgcagtggcacaatcttggctcactgtagtgtagacttcccaggctcaagggatttctcccaccccagactcccaagtagctggaactacgagtgtgcaccaccaccnanncacctggctaatgtctcttttttttggtagacacagagtctcactatttagcactgattggtctccaactcctggcctcaagcgatcctcctgcctagg-cttcccaaattgctgggattaca-ggcatgagccacaatgcctggccTCTGCTAGTTCCGTATTCTCTAGAGTTGTCTTTAC-TTTGTGCTAGTGTGTCCCTCATTGTGCTGATCCTCTGTAAAAATTAATACCttttttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcaatggtgctatctcggctcagcgcaacctccaccttctgggttcaagcaattctcctgcctcagcctcccgagtagttgggattacaggcatgtgccaccatgcccagctaattttgtatttttagtagagatggggtttctctgtgctggtcaggctggtctcgaactcctgacctcaggtgatctgtctgccttggcct-cccaaagtgctgggattacaggcatgagccaTTTTGCCTNGGCCAAAATTAATACTTTTTATATTAAATTtacatatatatatatatatatatatatatatatatatatatatatatatataCGttttttctttttgataccgngngtcntcancactgntcacccaggctggagtacagtggcacaacctctgctcactgcagcctccacctgccaggctcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtaagtgccaccacacccagctgatttttgtgttttttgtagagacgaggtttcgccatgtttcccagactgttctcaaactcctgagctcaaagcagtccacccaccttggcctcccagagttctggggttacaggtgtgagccatcTTGCTCATTCTA s panTro1.chr6 130252284 2835 + 161576975 GGTGCCTGTGTATAGTCTCTCTCCCTCTCTCtttttttttctttctaactttttgtgacatggtctggctctgtcacccaggctgaagtgcagtggtgtgatcatgggtcactgcagcctgaaactcctgggatcaagtgatcaatcct---cccacc-tcatcctaccaagtagtagggaccacaggtgtatgccacccaggtcttgctatgttgcccaggctggtcgtgagctcctgggcctcaagcaatcctctcaccttggccccccacagtgcaaggattacaggtatgagccaccatgcctggccCCTACCCTGCCTATTGAGAACCAAAAGAAGGATCCAAATTCTCCTTAGCTCAACTCGAGCCATTTCCTGATTGCTTCATCAGCAAGGAGCTGGTTATTGGGCTGTCCAGGCCTCCCAAGCAGCACAGAAATGAGGTGAAGGAGTTTTCCTGCTGCTCCACTCTGTAAGGAGTTGGAGGGTGATGTTTACTCGTTTGCAGAGAGAGATGCCTTGTAGGCACCTCAGGATGGAGAGGACCCTGATTCCAATGTCCtttttttctttagaaacaggaccttgccctgtcactcaggatggagttcagtggtcctatcatggctcattatagcctcaaactcccaggctcaagcaatcctaccatgtcagccttcccagtagctgggactacaggtaagcatcgtgacactcagtgaattttgtttttattttgttgtaaagatgggacctcagtatgttgccacggctgaccttgaactcctgcactcaagggattttcctgccctggcctcccaaagtattggtattacaggcataagccattgtgcccAccgtctctggttcttaaccttctgcctccctcttccagttttaaagaatgcttgtaattacatgggctctcctagatactccaggataatcttgttttaaggtcagctgatgagcaacattaattttatctgcactcttaattcccccttcctatgtaaTTGTGCTGTGTAACATAGGACATGAGCAATTGGTGGCGGTGGGGGTTATTACTTTGGCCACCACAGTAActattttatgccaggtactcagctaagcactggtgaattaagcatgaataacacacactccctaatctcCATCCATTCATGGGAGGAGCACTTCACCTGCCATGCTCCTGAGAATctcgggagtcatagaagtcttctatgaggaggtgatgccaaagcggacaagtgacagaggagtcaaagctagctaggaagagagtagaggtttaaggggaagcatactataagcagaggatattacccacttcagagactcccagaggagaaagagtgtgtgttcaaggggcagatgaggctcagttggactccatagcagatgaaatggagaggggcaagcagtgaggCTGCCTTGCAAGGCAGGGCAGAGCAGGGGCTGTTAAGGAGTTTGGACTTAATCCCTGAGGCAAGGAGAAGTGATGTAAATGGGGGAGTAACATGATGAGATTCATGGATTAGAGACATGGCTCAGGCTGCTATAGAGAAGGCACCAGGGAGAGCAGATGGCTCAATGGGTGTGCAGGAGACCTCTCCCTGAGTTTAGGGAGAGGTTTTTAAAACAGAAGAAGTTTGAGTAATTTAAATGATGATGGGAAGGAGCTAAAAGTGGGGGTTAGGTTAAAGATACAGGAAAGTGGGAGGAAGAACCGACAAGTGAGGTTCCAGAGAGGGCAGGAGAAGAGGAGATTCCCATAGGGGGTTTAACACtttcttttcttttttctttctaagacagggtctcactctgtcgcccaggctggagtgcagtggcacaatctgggctcactgtagtgtagacttcccaggcttaagggatttctcccaccccagactcccaagtagctggaactacgggtgtgcaccaccacc---acacctggctaatatctctttttattggtagacgcagagtctcactatttagcactgattggtctccaactcctggcctcaagcgatcctcctgcctaggcctccccaaattgctgggattacagggcatgagccacaatgcctggccTCTGCTAGTTCTGTATTCTCTAGAGTTGTCTTTACTTTTGTGCTAGTGTGTCCCTCATTGTGCTGATCCTCTGTAAAAATTAATACCttttttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcactatctcggctcagcgcaacctccacctgccgggttcaagcgattctcctgcctcagcctcctgagtagttgggattacaggcatgtgccaccatgcccagctaattttgtatttttagtagagatggggtttctctatgctggtcaggctggtctcgaactcctgacctcaggtgatctgtctgccttggcctccccaaagtgctgggattacaggcatgagccattttgcct-ggccAAaattaatactttttatattaaatttaca--------------------------tatatatatatatatatatataCGttttttctttttgataccgggtctc----acactg-tcacccaggctggagtacagtggcacaacctctgctcactgcagcctccacctgccaggctcaagcaattctcctgcctcagcctcccgagtagctgggattacaggtaagtgccaccacacccagctgatttttgtgttttttgtagagacgaggtttcgccatgtttcccagactgttctcaaactcctgagctcaaagcagtccacccaccttggcctcccagagtgctgggattacaggtgtgaaccatcttgctcattcta a score=46882.0 s hg17.chr17_random 271799 340 + 2618010 GTTTAAACTTTTGAGTGGTTTGTGTCTCCTGATTGGACTCCTACAAATACAGAATTGATGCTAGGAA-GGGTACCAGGAGATAGACGCACACA-GATGGGATTTGGGAATA-GGTTTGGT--TATCCAAGGA-------GCAGTGCTGAGCTCCTT-GCAATGGGATATGGGATGCTGGTGATTTCCAG-GAAGTGAGCTCACAATGACTCAAGCTGCCACATACTGTTGATT---GTGAAATGCCAGTTGAAGCATATGTCCTGCGAGCTTAGGGG--TGCTACAAGTTGACCACTGCAGCAGTAAAGATGACTCTGAAGA---ATGGCGTG----GGATGGTTCCTTTCAAATGCACTTGAGCA s panTro1.chr6 130255119 344 + 161576975 gtttaaacttttgagtggtttgtgtctcctgattggactcctacaaataCAGAATTGATGCTAGGAAGGGGTACCAGGAGATAGACGCACACAGGATGGGATTTGGGAATAGGGTTTGGT--TATCCAAGAA-------GCAGTGCTGAGCTCCTTGGTAATGGGATATGGGATGCTGGTGATTTCCAG-GAAGTGACCTCACAATGACTCAAGCTACCACATACTGTTGATT---GTGAAATGCCAGTTGAAGCATATGTCCTGCAAGCTTAGGGG--TGCTACAAGTTGACCACTGCAGCAGTAAAGATGACTCTGAAGA---ATGGCATG----GGATGGATCCTTTCGAAGGCACTTGAGCA s canFam1.chr7 6904922 358 - 83037113 gtacaaattactgtgtgctttctgttt--tgatgggatcctgacTGATAAACAGTTGGAACTTAGAG-TGGTCTCAGGAGATAGAGTGGCACA-GATGGGACGTGGGGATT-GGTTTGGTGGTACCCTTTGATTTGAGCGTGCTGCCGAGATCCTTAGcagtgggagatgagatgctagtaagccatggtgcagtgccatcacaattagtcaagctagtacctgtggtagattatgatgaagtgccaatt-aagcatgtgccttgggagcccaagtggctgctatac-ttggcccttatagtaagagtgctgactgt-aagatctgtggtgtgagatggatggatccttctgagtgcacttgagca a score=306268.0 s hg17.chr17_random 272139 3493 + 2618010 GCGGTCTCCAACCacagggccacagagctggaggtgagcagcaggcgagtgaagggaaacttcatctgtatttctagcccctcccatcacttgcatgaccacctgagctccatgtcctgtcagatcagcagcagcattagattgtcataggagcacaaactctgttgtgaagtgtgcatgcgagggatctaggttgtgtactccttatgagaatctaatgcctgatattctgttactgtctcccatcaccccaggtggacagtctagttgcaggaaaacaagctcagagatcccactgagtctacgttatagtgagttgtagaatcatttcattatatattactatgtagtaataatagaaataaagtgcacaatatatgtaatgcacttgaatcatcctgaaattattccctcattcccagtctgtggaaaaattgtcttccacACATTCACTCTGTtttttggtagaggcagggtcttaatatattgcccagtctgatttcaaactcctggcctcaagtaatatacctctctcagcctcccaaagtgctgagattacaggcataagccaccacCCTNCAACCAAG-ACTTTCTTAAACCAAATAAAA-ATTAAGTGAgattacttgagcccaggtggtcaaggctgcagtgagcctgattgcaccactgcactccagcctaggtgacagaatgagactgtctcaa----------aaaataaaataaaatacaaaTTAACCCTTTATGACATTCCCAGTAACT-----TCCTAAGTGCTCCCCACAAGTCTTTGAATTCTGTTTAATTTTCACATGACATTTAAGACATTTAAGAACTTATGTCTGTCTGTGTCATCCCTTTATGTCAAAAGATGTCTTTTTGTCACTTCCAGCTGGATCTA-CCATGAAAGACTTGTGAATCCAGGAAGAGAGACTGACTGGGC-AACATGTTATTCAGGTACAAAAAGATTTGGAC-TGTAACTTAAAAGTGATCAAATTA---TGTTTCCCATGCATNNCAGGTGCAATGGGAAGCTCTTctggagagtgagagaagcttccagttaaggtgacattgaagccaagtcctgaaagatgaggaagagttgtatgagagtggggaggnaaggggganggtgGNNNNAGGNGATGGGGAATGGGCCGGGATGGGATAGCGCAAACTGCCCGGGAAGGGACACCAGCACTGTACAGACCTG---AACAACGAAGATGGCATATTCTGTTCAGGGAATGGTGAATTAAGTGTGGCAGGAATGCTTTGTAGACACAGTAATTTGCTTGTATGGAATTTTGCCTGAGAGACCTCATTGCAGTTTCTGATTTTTTGATGTCTTCATCCATCACTGTCCTTGTCAAATAGTTTGGAACAGGTATAATGATCACAATAACCCcaagcataatatttcgttaattctcacagaatcacatgtaggtgccacagttatccccattttatgaatggagtgatgaaaaccttaggaataatgaatgatttgcgcaggctcacctggatattaagactgagtcaaatgttgggtctggtctgactttaatgtttgctttgttcatgagcaccacatattgcctctcCTATGCAGTTAAGCAGGTAGGTGACAGAAAAGCCCAtgtttgtctctactcacacacttccgactgaatgtatgtatggagtttctacaccagattcttcagtgctctggatattaactgggtatcccatgactttattctgacactacctggagttagcacagaccccacaagttaggggctcagtcccacgaggccatcctcacttcagatgacaatggcaagtcctaagttgtcaccatacttttgaccaancctngttaccnaatcgggggttcccgtaactgtcttcttgggtttaataatttgctagaacagtttacggaactcagaaaaacagtttattttctttttttctgagagagagggtcttattttgttgcccaggctggtgtgcaatggtgcagtcatagctcattgcagccttgattgtctgggttccagtggttctcccacctcagcctccctagtagctgagactacatgcctgcaccaccacatctggctagtttcttttattttttgtatagatggggtcttgttgtgttggccaggctggccacaaattcctggtctcaagtgatcctcccacctcagcctctgaaagtgctgggattacagatgtgagccaccacatctggccagttcatttcctattactggttcattgtgaaggatacatctcagaaacagtcaatgaaagagacgtgcatgctggatgcagtggctcatgcctgtaatctcagcactttggganggccaaggtgggaggatcgcttaaactcaggagtttgagaccagcctgggcaacatggtgaaaacttgtctctataaaaaattaaaaaataataataataactggtgtggtgttgtgcacctagagttccaactactagggaagctgagatgagaggataccttgagctggggactggggaggcttaggttacagtaagctgagattgtgccactgcactccagcttggacaacagagcctgatcctgtctcaaaaaaaagaaagatacccagggcaagttaagttcggaggggcacagagctcccatgccctctgttgaacatgcgaccctcccagcatctcctgtgtccagcaaccctgaaagctctgcaaacccctttcangggtgtttatggaggctttattatgcaagcatgattgataaaacctttggctgttggtgattaagtcagtctccagcccctcttccccctggagttcagtgcatgaggctgaaagttccaagcctcttaccatgtgg-ttgcatggtaatcagccctcctcttgaagaaatttaggagcttgcagtcacccagtcatctcaacaacatccccaaatgcattcttaccatgctggagatcccaaagttcttagaggctcttgtgttagaaacctgggaccaagaccaaatattaaaacaaaagatgctcctgtcacatctatcactgaggtctttgtaagagctttagaagctctgtgccaggaaccagggacagagattaaatatatatttcttttcttttttttgagacagaatctccctgtgccatccaggctggagtgcagtgatgtgatcatagctcactatagctttggccttctgagatcaagcaatcctcccatctcaacctcccaagtagctaggactacacatgcatgtcacccatgcccagatcatttttgtagagtcagagtttcaccgtggtggccaggttggccatgttggccagatggggtcttcttttgttgcccaggctggccacaaattcctgggctcaagtgatcctcccacctcgtcctTGtagagatgagatttagttatgtcgtccaggctgatctcaaactcctgggctaaattgattgtctcacctcagcctctcaagta s panTro1.chr6 130255463 3494 + 161576975 GCAGTCTCCAACCacagggccacagagctggaggtgagcagcaggcaagtgaagggaaacttcatctgtatttctagcccctcccatcgcttgcatgaccacctgagctccatgtcctgtcagatcagcagtagcattagattctcataggagcacaaactctgttgtgaagtgtggatgcgagggatctaggttgtgcactccttatgagaatctaatgcctaatattctgttactgtctcccatcaccccagatggacagtctagttgcaggaaaacaagctcagagatcccactgagtctacgttatagtgagttgtagaatcatttcattatatattactatgtagtaataatagaaataaagtgcacaatatatgtaatgcacttgaatcatcctgaaattattccctcactcccagtctgtggaaaaattgtcttccacACATTCACTCTGTtttttggtagaggcagggtcttaatatattgcccaggctgatctcaaactcctggcctcaagtaatatacctctctcagcctcccaaagtgctgagattacaggcataagccaccacCCT-CAACCAAGAACTTTCTTAAACAAAATAAAACATTAAGTGAgattacttgagcccaggtggtcaaggctgcagtgagcctgattgcaccac--gactccagcctaggtgacagaatgagactgtctcaaaaaataaaataaaataaaataaaatacaaatTAACCCTTTATGACATTCCCAGTAACTTTCCCTCCTAAGTGTTCCCCACAAGTCTTTGAATTCTGTTTAATTTTCACATAACATTTAAGACATTTAAGAACTTATGTCTGTCTGTGTCATCCCTTTATGTCAAAAGATGTCTTTTTGTCACTTCCAGCTGGATCTACCCATGAAAGACTTCTGAATCCAGGAAGAGAGACTGACTGGGCAAACATGTTATTCAGGTACAAAAAGATTTGGACTTGTAACTTAAAAATGATCAAATAATAGTGT----CATGCAT--CAAGTGCAATGGGAAGCTCTTctggagagtgagagaagcttccagttaaggtgacattgaagccaagtcctgaaagatgaggaagagttgtatgagagtggggaggaaaggggta-ggtggag---ggaTATGGGGAATGGGCTGGGATGGGATAGCGCAAACTGCCCGGGAAGGGAAACCAGCACTGTACAGACCTGAACAACAACGAAGATGGCATATTTTGTTCAGGGAATGGTGAATTAAGTGTGGCAGGAATGCTTTGTAGACACAGTAATTTGCTTGTATGGAATTTTGCCTGAGAGACCTCATTGCAGTTTCTGATTTTTTGATGTCATCATCCATCACTGTCCTTGTCAAATAGTTTGGAATAGGTATAATGATCACAATAACCCcaagcataatatttcgttaattctcacagaatcacaggtaggtgccacagttatccccattttatgaatggagtgatg-aagccttaggaataatgaatgatttgcccaagctcacctggatattaagactgagtcagatgttgggtttggtctgactttaatgtttgctttgttcatgagcaccacatattgcctctcCTATGCAGTTAAGCAGGTAGGTGACAGAAAAGCCCAtgtttgtctctactcacacacttccgactgaatgtatgtatggagtttctacaccaaattcttcagtgctctggatattaactgggtatcccatgactttattctgacactacctggagttagcacagaccccacaagttatgggctcagtcccatgaggccatcctcacttcagatgccaatggcaagtcctaagttgtcaccgtacttttgaccaacc--tgttacc-aatcgggggttcccataactatcttcttgggtttaataatttgctagaacagtttacggaactcagaaaaacagtttattttctttttttctgagagagagggtcttattttgttgcccaggctggtgtgcaatggtgcagtcataggtcattgcagccttgattgtctgggctccagtggttctcccacctcagcctccctagtagctgagactacatgcctgcaccaccacatctggctagtttcttttattttttgtatagatggggtcttgttgtgttggccaggctggccacaaattcctggtctcaagtgatcctcccacctcagcctctgaaagtgctgggattacagatgtgagccaccacatctggccagttcatttcgtattactggttcattgtgaaggatacatctcagaaacagtcaatgaaagagacatgcatgctggatgcagtggctcatgcctgtaatctcagcactttggga-ggccaaggtgggaggatcgcttaaactcaggagtttgagaccagcttgggcaacatggtgaaaacctgtctctataaaaaattaaaa------aataataaccggtgtggtggtgtgcacctagagttccaactactagggaagctgagatgagaggataccttgagctggggactggggaggcttaggttacagtaagctgagattgtgccactgcactctagcttggacaaaagagcctgatcctgtctcaaaaaaaagaaagatacccagggcaagttaagttcggaggggcacagagctcccatgccctctgttgaacatgccaccctcccagcatctcctgtgtccagcaaccctgaaagctctgcaaaccccgttca-gggtgtttatggaggctttattatgcaagcatgattgataaaatatttggctgttggtgattaagtcagtctccagcccctcttcctcctggagttcagtgcatgaggctgaaagttccaagcctcttaccatgtggattgcatggtaatcagccctcctcttgaagaaatttaggagcctgcagtcacccagtcatctcaacaacatccccggatgcattcttaccatgctggagatcccaaagttcttagaggctcttgtgttagaaacctgggaccaagaccaaatattaaaacaaaagatgttcctgtcacatctatcactgaggtctttgtaagagctttagaagctctgtgccacgaaccagggacagaaattaaatatatatttcttttcttttttttgagacagaatct-cctgtgtcatccaggctggagtgcagtgatgtgatcatagctcactgtaactttggcctcctgagatcaagcaatcctcccatgtcaacctcccaagtagctaggactacacatgcatgtcacccatgcccagctcatttttgtagagtcagagtttcaccacggtggccaggttggccatgttggccagatggggtcttcttttgttgcccaggctggccacaaattcctgggctcaagtgatcctcccacctcgtccttgtagagatgagatttagttatgttgtccaggctgatctcaaactcctgggctaaatcgattgtctcacctcagcctctcaagta a score=2192.0 s hg17.chr17_random 275645 23 + 2618010 ATATGTTAGGAAGGGTCCCAGGA s panTro1.chr1 228856049 23 - 229575298 ATATGTTAGGAAGGGTCCCAGGA a score=29808.0 s hg17.chr17_random 275668 163 + 2618010 GGTAGACCCACGCAGATGGGATTTGGGCATAGGTTTGGT-------TTCCCAGGGGGCAGTGCTGAGCTCTTTGCCAGTGGGAAATGGGATGCTGGTGATTT---CCAGTAGGTGACCTCACAGTGACTCAAGCTACCACTTACTGTTGATTGTGACGAAATGCCAGCTGAGG s panTro1.chr1 228856072 163 - 229575298 GGTAAACCCACACAGATGGGATTTGGGCATAGGTTTGGT-------TTCCCAGGGGGCAGTGCTGAGCTCTTTGCCAGTGGGAAATGGGATGCTGGTGATTT---CCAGTAGGTGACCTCACAGTGACTCAAGCTACCACTTACTGTTGATTGTGACGAAATGCCAGCTGAGG s canFam1.chr6 3363401 172 + 79106041 GATAGACCCACAAAGATGGGATTTGGTGATGAGTTTGGTCATGCTCTCGTCCTTGTGCAATGCTGAGATCCTTGTCAGT-GAAAATAGGATGTGGGTAATTTATGACATGAAGTGACATCACAATTAATCAAGCTATTATTTGTTGTTTATTGTGATGAAATGCCAACTGAAA a score=473.0 s hg17.chr17_random 275831 5 + 2618010 CACAT s canFam1.chr6 3363573 5 + 79106041 CACAT a score=12444.0 s hg17.chr17_random 275836 79 + 2618010 GCCTTGGGAGCTAAGTGGTTGCTGCCCTTGACCACTGTG-----AAGACTGGCTTGGGAAG---------GGTCGCTTTGGATGCACTTGAGc s panTro1.chr1 228849417 79 - 229575298 GCCTTGGGAGCTAAGTGGTTTCTGCCCTTGACCACTGTG-----AAGACTGTTTTGGGAAG---------GGTCGCTTTGGATGCAGTTGAGc s canFam1.chr6 3363578 93 + 79106041 GCCTTGGAGGCTGAGTGGCTGCTGCACTTGACGTTTATGACAGTAATATTGACTAAGAAGACAATGGTGTGGTCCTTTTGAGTGCACTTGAGC a score=41854.0 s hg17.chr17_random 275915 468 + 2618010 aggggtccccaacccctgagccatgtagccgcaaggagccacacagcaggaggtgagctgtgtcgagtgagggagtgagggaagcttcgtctgtatttacagccactcccctttgctcacattcccgcctgagctccaccttctcagatgagcagcagcgttagattctcataggagaacgcaccctgttgtgaaccgtgcatgtgagggatctaggttgcgctgtccttatgagaatctaatacctattgatctgtcactttctcccatcacgctcaggtgggaacatccagttgcaggaaaacaagcttaacacgccccctgattctacattatggtgagttctataattattttattatatattacagtgtaataatggaaataaagtgcctaataaatgcaaatgtgcttacatcTTTTGGCCCAGCTCCTACCTCCCGNCAGCCTCTCCAGGCCCAGAACTTT s panTro1.chr1 228849496 468 - 229575298 aggggtccccaacccctgagccatggagccgtaaggagccacacagcaggaggtgagtggtgtccagtgagggagtgagggaagcttcgtctgtatttacagccactcccctttgctcacattcccgcctgagctccgccttctcagatgagcagcagcattagattctcacaggagaacgcaccctgttgtgaaccgggtatgtgagggatctaggttgcgctgtccttatgagaatctaatacctattgatctgtcactttctcccatcacgctcaggtgggaccatccagtttcaggaaaacaagcttaacacgcccactgattcgacattatggtgagttctataattattttattatatattacagtgtaataatggaaataaagtgcctaataaatgtaaatgtgcttacatcTTTTGGCCCAGCTCCTACCTCCCGGCAGCCTCTCCAGGCCCAGAACTTT a score=22860.0 s hg17.chr17_random 276383 178 + 2618010 CTCCAGTCAGCCTCTACAGACCAAGCTCATGACTCACAATGGCCTATTTAGGCCCATACCCTACGTCACGGCAGCCTCCGCAGATGAGCCTACTGCCTCACAGCAGCCTCCACAGGCACAGCTCCATCGTTACAATGGCCTCTTTAGACCCAGCTCCTGCCTCCCAGCCTTCTCTCCA s panTro1.chr1 228849964 178 - 229575298 CTCCAGTCAGTCTCTACAGACCAAGCTCCTGACTCACAGTGGCCTATTTAGGCCCATACCCTACGTCACGGCAGTCTCCGCAGATGAGGCTACTGCCTCACAACAGCCTCCACAGGCACAGCTCCATCGTTACAATGGCCTCTTTAGACCCAGCTCCTGCCTCCCAGCCTTCTCTCCA s rn3.chr1 30571379 172 + 268121971 CTCACATCAGCCTGCACTGCTGCATCTCCACCCTCACATCAGCCTGCACTGCTGCATCTCCACCCTCACATCAGCCTGCACTGCTGCATCTGCACCCTCACATCAGCCTGCACTGCTGCATCTCCACCCTCACA------TCATCAGCCTGCACTGCTGCATCTCCACCCTCACATCA a score=1574.0 s hg17.chr17_random 276561 20 + 2618010 GGCTCTGAACTTTCTCAGTA s panTro1.chr1 228850142 20 - 229575298 GGCCCTGAACTTTCTCCgta a score=13126.0 s hg17.chr17_random 276588 191 + 2618010 gtagctgggactgtaggtatacatgatgatacttggctaatttttaaattgttttgtagacacggggtctcactttgttggccaggctggtgtcaaactaatggcctcaagtgacccttcncncccctgcctcccaTCCTCGAGGCATGNGNNANCCACNANNNNGNANC--TTGTTCAATTTTCTAAAAAAG s panTro1.chr6 116696337 187 - 161576975 gtagctgggactgtaggtatacatgacgatacttggctaatttttaaattgttttgtagacatggggtctcactttgttggccaggctggtgtcaaactcatggcctcaagtgacccttc-cacccctgcctctcaTCCTAGAGGTATGTGCCA-CCACAA----GGAGCACTTGTTCAATTTGCTAAAAAAA a score=782.0 s hg17.chr17_random 276779 3 + 2618010 AAA s panTro1.chr6 116696524 3 - 161576975 AAA s mm5.chr6 127913144 3 + 149721531 AAT s canFam1.chr9 26005035 3 + 53642819 AAT a score=32167.0 s hg17.chr17_random 276782 70 + 2618010 TTTCTAAAGTAAGGCTGTGGGATGATGGCAGGAAGATAAAAGAAAAACA----GAAGAAT-AAGTTAAAA-TGACT s panTro1.chr6 116696527 71 - 161576975 TTTCTAAAGTAAAGCTGTGGGATGATGGCAGGAAGATAAAAGAAAAACA----GAAGCAT-AAGTTAAAACTGACT s mm5.chr6 127913147 74 + 149721531 TTTCTAAAATAAGGTTTAAGGACAATGACAGTAAGATAAGGGAAGAAAACATGGAGGAATGAAGTCCTAA-TTAC- s rn3.chr15 64177831 71 + 109774626 TTTCTAAAATAAGGTTGAAGGACAATGACAA-AAGATAGGGAAGAAACA--TGGAGGAATGGAGTCCTAA-TTAC- s canFam1.chr9 26005038 74 + 53642819 TTTCTAAAATAAGGTTTCAGGACAATGACAGTAAGATAAGGGAAGAAAACATGGAGGAATGAAGTCCTAA-TTAC- a score=72178.0 s hg17.chr17_random 276852 147 + 2618010 TATTCACACATATTCTTTTGACAGCAAG-------------AAGAACT-----------TTT-AGTATATACATTCCTTACAAACAAACAAAAGGCAGAT----------AAACAATGTTGTATAGGAACTTCA-------------------ACACACACTGT------------ACAATATTCC----------CACTTT---------GCTGACATAAGTTATGGAAA--T s panTro1.chr6 116696598 148 - 161576975 TATTCACATATATTCTTTTGACAGCAAG-------------AAGAACT-----------TTTTAGTATATACATTCCTTACAAACAAACAAAAGGCAGAT----------AAACAATGTTGTGTAGGAACTTCA-------------------ACACACACTGT------------ATAATATTCC----------CACTTT---------GCTGACATAAGTTATGGAAA--T s mm5.chr6 127913221 148 + 149721531 TATACATGCATCTTTTTTTTACAGTAGG----------GGAGGGAACC-----------TTT-----TACAGATAAGTTACAAACAAAGAAAAGGCAAAT----------AAACAATTTTGTACAAGAAATTTA-------------------ACACATTCTGT------------ACAGTGTCTT----------GACTTC---------ACTGTTATTATTTGTACAAACTC s rn3.chr15 64177902 141 + 109774626 TATACATGCATGTTC---TGACAGTGGG--------------GGAACC-----------TTT-----TACAGATAAGTTACAAACAGAGAAAATGCAAAT----------TAACAGTTCTGTACAAGAAATTTA-------------------ACACCTTCTGT------------ACAGGGTCTT----------CACTTT---------GCTGTCATCATTTGTACAAACTC s canFam1.chr9 26005112 145 + 53642819 TATACATGCATATTT-TTTGACAGCAGG------------GGGAAACC-----------TTT-----TACAGATAAGTTACAAACAAAGAAAAGGCAAAT----------AAACAATTTTGTACAAGAAATTTA-------------------ACACATTCTGT------------ACAATGTCTT----------CACTTT---------GCTGTCATCATTTGTACAAACTC s danRer1.chr2 24497698 224 - 32943701 TATACATGCAGATCCTTTGGACAGCAGGAGAGGATGAGGGGGGAAATTAAAATGAAACATTT-----TACAGA--AATTAAAAACA-AGAAAAGGCAAATTATTTTATACAAGAAATTCTGTACAAGGCTTTCACTTTGCTGTCATCATCTGTACAAATTCTGTGGGAAAAGAGAAACAGGATATTAAATAAACACCACTTTAAGTCTTAAACCGACACATGCTATGTGAAT-- a score=248602.0 s hg17.chr17_random 276999 246 + 2618010 ------------------TTCATGGTTTACTTGAGTGTCGCTACCAGTATTTTGCTTCTCTGATGATTTTTATCAACTTCCTCATCTGTTAACTTCTCTCCAAGGTATGTCATGTCACGACATACTGCCGCTGCACGAACATGGCCAGTGTCTTCC--------------------------TAT---------------------------------------------------------------TCAACA-TGTAGAAT------------------------------------------------------------------GCTTTCCTAATTTCTCTTTTTACTCTCTGTCTTTGTGTTCTGCATTTTCCTTACTTTTATTGTCAGAAACTCCAGAAAGTCAATCGTACTA s panTro1.chr6 116696746 242 - 161576975 ------------------TTCGTGGTTTACTTGAGTGTCGCTACCAGTATTTTGCTTCTCTGATCATTTTTATCAACTTCCTCATCTGTTAACTTCTCTCCAAGGTATGTCATATCATGACATACTGCTGCTGCACGAACATGGCCAGTGTCTTCC--------------------------TAT---------------------------------------------------------------TAAACA-TGTAGAAT------------------------------------------------------------------GCTTTCCTAATTTCTCTTTTTACTC----TCTTTGTGTTTTGCATTTTCCTTACTTTTATTGTCAGAAACTCCAGAAAGTCAATCGTACTA s mm5.chr6 127913369 238 + 149721531 ------------------TTCATAGTTCACCTGACCGTCCCCGTCAATG-TCTGCTTCCCTGATCA-TCTCATCGACCTCTTCATCTGTTAACTTCTCTCCAAGGTTTGTCATCACATGGCGAAACTCTGCTGCACTAATATAGCCATTGTCATCCT-------------------------TAT---------------------------------------------------------------CAAACA-CACGGAAT------------------------------------------------------------------GCTTCTCTAATTTCT-TCTTCAC------TGTCTGTGTCTTTCATTTTTCTTGCCATCATTGTCAGAAATTCAGGGAAATCAATTGTGCCA s rn3.chr15 64178043 238 + 109774626 ------------------TTCGTAGTTTACCTGACCATCCCCATCGATG-TCTGCTTCCCTGATCA-TTTCATCAACCTCTTCATCAGTTAACTTCTCTCCAAGGTTTGTCGTCACGTGGCGAAGCTCTGCTGCACTGATGTAGCCATTGCCATCCT-------------------------TAT---------------------------------------------------------------CAAACA-CATGGAAC------------------------------------------------------------------GCTTCTCTAATTTCT-TCTTCAT------TGTCTGTGTCTTTCATTTTTCTTGCCATCATTGTCAGGAATTCAGGGAAGTCGATTGTGCCA s canFam1.chr9 26005257 238 + 53642819 ------------------TTCATAGTTTACTTGACCATCACCATCAATA-TCTGGTTCCCTGATCA-TTTCATCAACCTCTTCATCTGTTAACTTCTCTCCCAGGTTTGTCATCACATGGCGAAGCTCTGCTGCACTAATATAGCCATTGCCATCCT-------------------------TAT---------------------------------------------------------------CAAACA-CACGGAAT------------------------------------------------------------------GCTTCTCTAATTTCT-TCTTCAC------TGTCTGTGTCTTTCATTTTTCTTGCCATCATTGTCAGAAATTCCGGGAAGTCAATTGTGCCA s fr1.chrUn 326808610 309 + 349519338 ------------------TTCATAGTTGACCTGTCCGTCTCCGTCGATG-TCTGCTTCTCTAATCA-TCTCGTCCACCTCCTCGTCGGTGAGCTTCTCCCCGAGGTTTGTCATCACGTGGCGGAGCTCGGCAGCGCTGATGTAGCCGTTGCCGTCCT----------GGGGTCCA-------CATGCACACGTTAGGCCGGCGCTCTGCCACGTGCGCGCGGGGAAACGTGCCCAAAGCCTACCTTGTCAAAGA-CACGGAAT------------------------------------------------------------------GCTTCTCTGATCTCC-TCCTCGC------TGTCTGTGTCCTTCATTTTCCTTGCCATCATTGTCAGGAACTCTGGGAAATCTATCGTGCCG s danRer1.chr2 24497922 348 - 32943701 TGCAGCACTGCACTCACCTTCATAATTGACCTGACCGTCTCCATCAATG-TCTGCTTCCCTAATCA-TTTCGTCCACCTCCTCGTCTGTTAATTTCTCCCCCAAGTTTGTCATTACATGACGCAGTTCGGCCGCACTAATGTAGCCATTGCCGTCCTGACAAGCAAAGGGGAGCAAATCAGTTAT---------------------------------------------------------------TTCACGTTGAAGAATGTTACCAGCAAAGACTTGATAGTTCAGCGTTTCTTTAGAAGCATTACCTTATCAAAGACACGGAAAGCTTCTCTGATCTCC-TCCTCAC------TGTCGGTATCTTTCATTTTTCTTGCCATCATCGTCAAGAACTCGGGAAAATCTATTGTTCCA a score=-4677.0 s hg17.chr17_random 277245 3 + 2618010 AT-T s panTro1.chr6 116696988 3 - 161576975 AT-T s mm5.chr6 127913607 4 + 149721531 TTAC s rn3.chr15 64178281 4 + 109774626 TTAC s canFam1.chr9 26005495 4 + 53642819 TTTC s fr1.chrUn 326808919 3 + 349519338 TTT- a score=2537.0 s hg17.chr17_random 277248 4 + 2618010 TATC s panTro1.chr6 116696991 4 - 161576975 TATC s mm5.chr6 127913611 4 + 149721531 CATC s rn3.chr15 64178285 4 + 109774626 CGTC s canFam1.chr9 26005499 4 + 53642819 CATC a score=6228.0 s hg17.chr17_random 277252 23 + 2618010 ACGATTTGCTTTATTAAT-------TTATA s panTro1.chr6 116696995 23 - 161576975 ACCATTTGCTTTATTAAT-------TTATA s mm5.chr6 127913615 30 + 149721531 CGCATCTACTTCATTGATCATGTCCTGCAG s rn3.chr15 64178289 30 + 109774626 GGCATCTACTTCATTGATCATGTCCTGCAG s canFam1.chr9 26005503 30 + 53642819 AGCATCTACTTCATTAATCATGTCCTGTAA s fr1.chrUn 87291074 23 + 349519338 ATGTTGAGCTGAACTGAT-------TCATA a score=30784.0 s hg17.chr17_random 277275 49 + 2618010 CTTTGCTTATATGGAATTTTGCCCAGCAGACCTCATTACAATTTCTAAC s panTro1.chr6 116697018 49 - 161576975 CTTTGCTTATATGGAATTTTGCCCAACAGACCTCATTACAATTTCTAAC s mm5.chr6 127913645 49 + 149721531 CTCTGCTTCTGTGGGGTTCTGCCCCAGGGACCTCATCACTGTCTCCAGC s rn3.chr15 64178319 49 + 109774626 CTCTGCTTCTGTGGGGTTCTGCCCCAGAGACCGCATCACCGTCCCCAGC s canFam1.chr9 26005533 49 + 53642819 CTTTGCTTCTGTGGGATTCTGCCCAAGAGACCTCATTACAGTTCCCAAT a score=-683.0 s hg17.chr17_random 277324 4 + 2618010 --CTGt s panTro1.chr6 116697067 4 - 161576975 --CTGt s rn3.chr15 64178370 2 + 109774626 --CT-- s canFam1.chr9 26005582 4 + 53642819 TCCT-- a score=398.0 s hg17.chr17_random 277328 10 + 2618010 tttatttntg s panTro1.chr6 116697071 9 - 161576975 tttattt-tg a score=54755.0 s hg17.chr17_random 277338 777 + 2618010 ttttttnttntntcntgangacagggtctnnnccctctgttgtccaaggctggagtgtagtagtgccatcgcagctgactgcagcctcaaccttccaggctgaagcgatcctcccacctcaacctcccacgtggctgagactacaggtgcttgccactatgcccaactaacatttggaattttcgtatacgtggattccagaggggtgacagcgaaacgtgagtaagcatggattttggtatatgcagagatggggggctggaactaat----tctgtatactgagggacgac-GACTATATGTTTTTACAATGACGCTGTGGGATACATACTGTTGCATAGCCTTGAAAATAATA----------------ATTTTTAATTGAGTGGAATAAGAATAATATTGATAAAAGTAGCAGCTggccaggtgtggtggctcacactggtaatcgcaacactnnttggngaggctgaggcaggaggatggcttgaggccaagagtttgcgataggccttggaaa-caaagggggagtcaccatccctacagaaaaatacatgaattagcctagtgtggtggcatgttcctgtagtcccagctacttgggaggctgaggtgggaggatcacttgagcccagggaggctgagactgcagtgagtcatgatcaggcctctgcactccagcctgggtgacagagtgagaccctgtctcaaaacaacaaaaaaGCAGCAGC-AACATCAACTGACCTTTTACCAGGTGCCTATTGATACCATAGTTTAATTTCTTATAACTGTTTCTTAT s panTro1.chr6 66392095 778 + 161576975 tgttttgtttttttctgac-acagggtcttg---ctctattgtcc-aggctggagtgtagtggtgccatcacagctgactgcagcctcaacctcccaggttcaagcgatcctcccacctcagcctcctacgtggctgagactataggtgcttggtactgtgcccaactaatatttggacttttCCtatatgtgggttccagagggctgactgtgaaatgtgagtatgcatggattttggtatacgcagagatggggggctggaactaatcctctctgtataccgagggatgactg--TATATGTTTTTACAATTATGCTGTATGACACATATTGTTCCATAGCCTTGAAAATGataatttttaatgaaaattatttttaattGAGAGGAATAA---------TAATAAAAGTAGCAGCTggccaggtgtggtggctcacaccagtaatcacaacact--ttcg-gaggctgaggtaggaggatggcttgaggccaagagtttgagacaggcctcggaaaccaaaggagg---caccatccctacagaaaagtacatgaattagcctagtgtggtgacatgttcctgtagtcccagctacttgggaggctgctgtgggaagatcacttgagtccaaggaggttgagactgcagtgagtcatgatcaggcctctgcactccagcctgggtgacagagtgagaccctgtctcaaagcaacaaaaaaGTAGCAGCTAACATTAACTGACCTTTTACCAGGTGCCTATAAATACCATAGTATAATTTCTTATAACTGTTTCTTAT a score=6264.0 s hg17.chr17_random 278115 82 + 2618010 TTCACTTACCAACTCTGTCTTCAGTTACTCCCAGATTTTTACTGTGTGTGTACAGATGACCTTTTGCTTAGATTGAATTGTC s panTro1.chr6 94639013 82 - 161576975 TTCACTTAACCACTCTGTCTTCAGTTACTCCCAGATTTTCACTGTGTTTGTGCAGATGACCTTTTGTTTAGGTTCAGTTGTC a score=18992.0 s hg17.chr17_random 278197 240 + 2618010 TCCCCAGAAGTAAGATTACTGTGAGTCATGGTGAATGGACATTCTCCTTACCCTTGATGTaaattgacagggntttgggtgcctcccagctataatcttagcactttgggaggctaagnagaggaggattgcttgaggccaanagntggangaggcagtatggcagtatgggggagaccctggctccattattttaaaaaattgacaggCTTTACCCCGGAAAGGCTTATACCCAATTTA s panTro1.chr1 228855172 237 - 229575298 TCCCCAGAAGTAAGATTACTGTGAGTCATGGTGAATGGACATTCTCATTACCCTTGATGTAAGTTGACAGGGTTTTGAgtgcctcccagctataatcttagcactttgggaggccaag-agaggaggattgcttgaggccaagagttggaggaggcagtatggcagtat-ggtgagaccctgtctccactattttaaaaaatTGACAGGCTTTACCCTGg-aaggcttatacacaattta a score=382.0 s hg17.chr17_random 278741 4 + 2618010 GCAA s panTro1.chr1 228857275 4 - 229575298 GCAA a score=13411.0 s hg17.chr17_random 278745 76 + 2618010 GAAGAACTTTTAGTATATACATTCCTTACAAACAAACAAAAGGCAGATAAACAATGTTGTATA-GGAACTTCAACAC s panTro1.chr1 228857279 77 - 229575298 GAAGAACTTTTAGTATATACATTCCTTACAAACAAACAAAAGGCAGGTAAACAATGTTGTATAGGGAACTTCAACAC s mm5.chr17 86033557 72 + 93559791 GGGGAACCTTT----TACAGATAAGTTACAAACAAAGAAAAGGCAAATAAACAATTTTGTACA-AGAAATTTAACAC a score=173.0 s hg17.chr17_random 278896 4 + 2618010 TTTN s panTro1.chr1 228857432 4 - 229575298 TTTT a score=5730.0 s hg17.chr17_random 278900 6 + 2618010 GCTTCT s panTro1.chr1 228857436 6 - 229575298 GCTTCT s rn3.chr1 247947106 6 - 268121971 GCTTCT s canFam1.chrX 19184892 6 + 126913094 GCTTCT s danRer1.chrNA 276838104 6 - 390413307 GCTTCT a score=72032.0 s hg17.chr17_random 278906 95 + 2618010 CTGATGATTTTTATCAACTTCCTCATCTGTTAACTTCTCTCCAAGGTATGTCATGTCACGACATACTGCCGCTGCACGAACATGGCCAGTGTCTT s panTro1.chr1 228857442 95 - 229575298 CTGATGATTTTTATCAACTTCCTCATCTGTTAACTTCTCTCCAAGGTATGTCATGTCACGACATACTGCCGCTGCACGAACATGGCCAGTGTCTT s mm5.chr6 146583831 95 + 149721531 CTCGTGACACTCTTAGACCTCTTCATCTGTTAACTTCTCTCCAAGGTTTGTCATCACATGGCGAAGCTCTGCTGCACTAATATAGCCATTGCCGT s rn3.chr1 247947112 94 - 268121971 CTGATCAT-TTCGTCTATGTCTTCATCTGTTAACTTTTCCCCTAGGTTTGTCATGACGTGGCGCAGTTCTGCTGCACTGAAGTAACCATTTCCAT s canFam1.chrX 19184898 94 + 126913094 CTGATCAT-TTCATCTACTTCTTCATCTGTTAGTGTTTCTCCTAAGTTTGTCATGACATGACATAGTTCTGCTACATTGATGTAACCATTCTCAT s danRer1.chrNA 276838110 94 - 390413307 CGAATCAT-CTCATCAACTTCTTCATCAGTCAACTTCTCTCCAAGGTTTGTCATGACGTGGCGCAATTCCGCTGCGCTGATGTATCCATTCCCAT a score=12764.0 s hg17.chr17_random 279001 33 + 2618010 ----------------------------------------------------------------------------------------CC-TATTCAACATGTAGANTGCTTTCCTAATTTC s panTro1.chr1 228857537 33 - 229575298 ----------------------------------------------------------------------------------------CC-TATTCAACATGTAGAATGCTTTCCTAATTTC s mm5.chr6 146583926 34 + 149721531 ----------------------------------------------------------------------------------------CCTTATCAAACACACGGAATGCTTCTCTAATCTC s rn3.chr1 247947206 34 - 268121971 ----------------------------------------------------------------------------------------CCTTGTCAAAGACTCGGAATGCCTCGCGGATTTC s canFam1.chrX 19184992 34 + 126913094 ----------------------------------------------------------------------------------------CCTTGCCAAAGATGCAGAATGCTTCACAAATTTT s fr1.chrUn 87291272 33 + 349519338 -----------------------------------------------------------------------------------------CTTGTCGAAGACTCTGAAAGCCTCTCTGATCTC s danRer1.chrNA 276838204 122 - 390413307 CCTTCAGCATAATACCGATGTCAGTTACAACAAGACTGTGTGCCACTAGTCTGGTACAATAGTTTTACTCGCAACTGGACAAACTTTACCTTATCAAAGACACGGAATGCTTCTCTGATCTC a score=45616.0 s hg17.chr17_random 279034 73 + 2618010 TCTTTTTACTCTCTGTCTTTGTGTTCTGCATTTTCCTTACTTTTATTGTCAGAAACTCCAGAAAGTCAATCGT s panTro1.chr1 228857570 73 - 229575298 TCTTTTTACTCTCTGTCTTTGTGTTCTGCATTTTCCTTACTTTTATTGTCAGAAACTCCAGAAAGTCAATCGT s mm5.chr6 146583960 66 + 149721531 TTCT-----TCACTGTC--TGTGTCTTTCATTTTTCTTGCCATCATTGTCAGAAGTTCAGGGAAATCAATTGT s rn3.chr1 247947240 66 - 268121971 TTCT-----TTGCTATC--TGTGTCTTTCATTTTTCTAGCCATCATAGTCAAGAACTCTGGAGAGTCAATGGT s canFam1.chrX 19185026 64 + 126913094 CT-------TCACTGTC--TGTATCTTTCATTTTTCTAGCCAGTGTAGTCAAAAATTCTGAGAAGTCAATGAT s fr1.chrUn 87291305 66 + 349519338 CTCC-----TCGCTGTC--GGTGTCTTTCATCTTCCTGGCCATCATGGTCAGGAACTCAGGAAAGTCGATGGT a score=22519.0 s hg17.chr17_random 279107 75 + 2618010 ACTGAT-TTATCACGATTTGCTTTATTAATTTATAC---------TTTGCTTATATGGAATTTTGCCCAACAGACCTCATCACAG s panTro1.chr1 228857643 75 - 229575298 ACTAAT-TTATCACGATTTGCTTTATTAATTTATAC---------TTTGCTTATATGGAATTTTGCCCAGCAGACCTCATTACAG s mm5.chr6 146584026 83 + 149721531 GCCACTACCATCCGCATCTACTTCATTGA-TCATGCCCTGCAG-TTCTGCTTCTGTGGGGTTCTGCCCCAGGGACCTCATCACTG s rn3.chr1 247947306 84 - 268121971 GCCATTCCCGTCGGCATCCACTTCGTTGA-TCATATCCTGCAGTTGCAGCCTCGGTTGGGTTCTGACCCTGAGACCGCATGACAG s canFam1.chrX 19185090 83 + 126913094 GCCATTACCATCAGCCTCCACTTCATTGA-TCATATTCTGCAA-TTAGGCTCTTGTTGGGTTCTGACTCAGTGACCTCATGACAG a score=2560.0 s hg17.chr17_random 279182 8 + 2618010 TTTCTAAC s panTro1.chr1 228857718 8 - 229575298 TTTCTAAC s mm5.chr6 146584109 8 + 149721531 TCCCCAGC s rn3.chr1 247947390 8 - 268121971 TCCCCAGC a score=-1269.0 s hg17.chr17_random 279190 6 + 2618010 ----CTGTTT s panTro1.chr1 228857726 3 - 229575298 ----CTG--- s rn3.chr1 247947398 6 - 268121971 TCCTTT---- a score=699.0 s hg17.chr17_random 279196 13 + 2618010 TAttttttattta s panTro1.chr1 228857729 9 - 229575298 ----ttttattta a score=25343.0 s hg17.chr17_random 279209 290 + 2618010 tttattttttttgttctgagacagggtctccctctgttgtccaaggctggagtgtagtagtgctattgcagctgactgcagcctcaaccttccaggctgaagcgatcctcccacctcaacctcccacgtggctgagactacaggtgcttgccactatgcccaactaacatttggaattttcgtatacgtggattctagaggggtgacagcgaaacgtgagtaagcatggattttggtatatgcagagatggggggctggaactaattctgtatactgagggatgaGGACT s panTro1.chr6 116697080 288 - 161576975 tttttttttttttttctgagacagggtctccctctgttgtccaaggctggagtgtagtagtgctatcacagctgactgcagcctcaaccttccaggctgaagcgatcctcccatctcaacctcccacgtggctgagactacaggcgcttgccactatgcccaactaatatttggaattttCCtatacgtggattccagaggggtgatagcgaaacgtgagtaagcatggattttggtatatgcagagatggggggctagaactaattctgtatactgaggg--gaggact a score=10639.0 s hg17.chr17_random 279499 101 + 2618010 GTGTATGTTTTTACAATTACGCTGTAGGATACATACTGTTGCATAGCCTTGAAAATAATAATTTTTAATTGAGTGGAATAAGAATAATATTGATAAAAGTA s panTro1.chr6 116697368 101 - 161576975 gTATATGTTTTTACAATTAGACTGTAGGATACATACTGTTGCGTAGCCTTGAAAATAATAATTTTTAATTGAGTGGAATAATAATAATATTGATAAAAGTA s danRer1.chr2 24500054 101 - 32943701 ATGAACTTTTTAAAAATTCCGATGGAAAAAAACTTCTGGTGAACTCTATGTAAAATATACATTTTTAATCATGTTAAAATAAATAAGTGTGTACAAAAACA a score=99288.0 s hg17.chr17_random 279600 1192 + 2618010 GCAGCTggccagatgtggtggctcacactggtaattgcaacactttgggaggctgaggcaggaggatggcttgaggccaagagtttgcgataggccttggaaacaaagggggagtcaccatccctacagaaaaatacatgaattagcctagtgtggtggcatgttcctgtagtcccagctacttgggaggctgaggtgggaggatcacttgagcccagggaggctgagactgcagtgagtcatgatcaggcctctgcactccagcctgggtgacagagtgagacccnntngntnctncaaaannnacaaaaaaGCAGCAGC-AACAT-CAACTGACCTTTTACCAGGTGCCTATTGATACCATAGTTTAATTTCTTATAACTGTTTCTTATTTCACTTACCAACTCTGTCTTCAGTTACTCCC-AGATTTTTACTGTGTGTGTACAGATGACCTT-TTGCTTAGATTGAATTGTCTCCCCAGAAGTAAGATTACTGTGAGTCATGGTGAATGGACATTCTCCTTACCCTTGATGTAAATTGACAGGGTTTTGggtgcctcccagctataatcttagcactttgggaggctaagagaggaggattgcttgaggccaagagttggaggaggcagtatggcagtatggtgagaccctgtctccattattttaaaaaattgacaggctttacccgggaaggcttatacacaatttaaacacccctcatagtataagaaggtgcccatttcactgcacctttgccagcacagggtattatAATTTAGTAAGTCATTTTTTGTTTGATTATTTTACATAGACAAAAGAACTCATATTACTTTACTT-GTCACATTTCAACATCTTTCCTCAGCTTATTAGCTCTATTTCTTTTCTGTCTGTAAATGGTTGTTGTGGttttgttctttgagacagggtcttgctctgtcaccaggctggactgtagtggcataatcatgcctcactgcagccttgacctcccaggctcaaacttcagcattccgagtagctgggactacaagtgtgcactaccaccaccagctaacttttttcttcctttggatagagacagggtctcactctgttgtccagaccggtctctagctcctggcct-taagcaatcctcctg-cattagcttctcaaattgctggaatttcaggcctgagccaccatgcctggccTGG s panTro1.chr6 116697469 1186 - 161576975 GCAGCTggtcaggtgtggtggctcacactggtaatcgcaacactttgggaggctgaggcaggaggatggcttgaggccaagagtttgcgataggccttggaaacaaaggg--agtcaccatccctacagaaaaatacatgaattagcctagtgtggtggcatgttcctgtagtcccagctacttgggaggctgagctgggaggatcacttgagcccagggaggctgagactgcagtgagtcatgatcaggcctctgcattccagcctgggtgacagagtgagaccctgtc------tcaaaaca-acaaaaaaGTAGCAGCTAACATTCAACTGACCTTTTACCAGGTGCCTATTGATACCATAGTTTAATTTCTTATAACT--TTCTTATTTCACTTACCAACTCTGTCTTCAGTTACTCCCCAGATTTTTACTGTTTGT--ACAGATGACCTTATTGTTTAGATTGAATTGTCTCCCCAGAAGTAACATTACTGTGAGTCATGGCGAATGGACATTCTCATTACCCTTGATGTAAATGGACAAGGTTTTGggtgcctcccagctataatcttagcactttgggaggctaagacaggaggattgcttgaggccaagagtttgaggaggcagtatggcagtatggtgagaccctgtctctaTTATTTTAAAAAATTGACAATCTTTACCCTGgaaggcttatacacaatttaaacacccctgatagtataagaaagtgcccatttcactgcacctttgccagcacagggtattatAATTTAGTAAGTCATTTTTTGTTTGATTATTTTAAATAGATAAAAGACCTCATATTACTTTACTTAGTCACATTTCAACATCTTTCCTTAGCTTATTAGCTCTATTTCTTTTCTGTCTGTAAATGGTTGTTGTTGttttgttctttgagacagggtcttgctctgtcaccaggctggactgtagtggcataatcatgcctgactgcagccttgacctcctaggctcaaacttcagcattccgagtagctgggactacaagtgtgcaccaccactcccagctaatttttttctttttttggatagagacagggtctcactgtgttgtccagaccgatctctagctcctggcctgtaagcaatcctcctggcattagcttctcaaattgctggaatttcaggcatgagccaccatgcctggccTGG a score=20137.0 s hg17.chr17_random 280792 105 + 2618010 gctagtcctatattctctagagttctctttactttgtgctagccaatctctcattatgctgttcacctgttataatgaataattctctgtattaaattttaccac s panTro1.chr6 116698655 105 - 161576975 gctagtcctatattctctagagttctctttactttgtgctagccaatctctcattatgctgctcacctgttataatgaataattctctgtattaaattttaccac s canFam1.chr6 3363238 100 + 79106041 gctattcttatattctttaatgttctttttactttttactagccagtctttcattattatgatcttctgttac----aataattctttatattaaactttacct- a score=35998.0 s hg17.chr17_random 280897 248 + 2618010 tttaaacttttgagtggtttatgcttcctgattggactctgacT----------AAT--ATGTTAGGAAGGGTCCCAGGAGATACACCCACACAGATGGGATTTGGGCATAGGTTTGGT-------TTACCAGGGGGCAGTGCTGAGCTCTTTGCCAGTGGGAAATGGGATGCTGGTGATTT---CCAGTAGGTGACCTCACAGTGACTCAAGCTACCACTTACTGTTGATTGTGACGAAATGCCAGCTGAGGCACATGCCTTGGGAGCT s panTro1.chr6 130265909 257 + 161576975 TTTAAACTTTGGAGTGGTTTGTGTCTCCTGATTGGACTC---CTGCAAATACAGAATTGATGCTAGGAAGGGTACCAGGAGATAGACGCACACAGATGGGATTTGGGAATAGGTTTGGT-------TATCCAAGGAGCAGTGCTGAGCTCCTTGCTAATGGGATATGGGATGCTGGTGATTT---CCAGTAAGTGACCTCAAAATTACTCAAGCTACCACATACTGTTGATTGTGATGAAATGCCAGTTGAAGCACCTGTCCTGCGAGCT s canFam1.chr6 3363338 252 + 79106041 gttcaacttctgtgtggtttatgtgtcctgattagaccctgaca---------------AAGGCAGAACTGATATCAG--GATAGACCCACAAAGATGGGATTTGGTGATGAGTTTGGTCATGCTCTCGTCCTTGTGCAATGCTGAGATCCTTGTCAGT-GAAAATAGGATGTGGGTAATTTATGACATGAAGTGACATCACAATTAATCAAGCTATTATTTGTTGTTTATTGTGATGAAATGCCAACTGAAACACATGCCTTGGAGGCT a score=10317.0 s hg17.chr17_random 281145 67 + 2618010 AAGTGGTTGCTGCCCTTGAC------------------CACTGTGAAGAC--TGGTGTGGGAAGGGTCGCTTTGGATGCACTTGAGc s panTro1.chr6 116699008 67 - 161576975 AAGTGGTTGCTGCACTTGAC------------------CACTATGAAGAC--TGGTGTGGGAAGGGTCATTTTGGATGCTCTTGAGc s canFam1.chr6 3363590 81 + 79106041 GAGTGGCTGCTGCACTTGACGTTTATGACAGTAATATTGACTAAGAAGACAATGGTGT------GGTCCTTTTGAGTGCACTTGAGC a score=36363.0 s hg17.chr17_random 281212 403 + 2618010 aggggtccccaacccctgagccatgtagccgcaaggagccacacagcaggaggtgagcggtgtcgagtgagggagtgagggaagcttcgtctgtatttacagccactcccctttgctcacattcccgcctgagctccaccttctcagatgagcagcagcgttagattctcataggagaacgcaccctgttgtgaaccgtgcatgtgagggatctaggttgcgctgtccttatgagaatctaatacctattgatctgtcactttctcccatcacgctcaggtgggaccatccag-ttgcaggaaaacaagcttaacacgcccactgattctacattatggtgagttctataattattttattatatattacagtgtaataatggaaataaagtgcctaataaatg s panTro1.chr6 116699075 404 - 161576975 aggggtccccaacccctgagccatggagccgtaaggagccacacagcaggaggtgagtggtgtcgagtgagggagtgagggaagcttcgtccgtatttacagccactcccctttgctcacattcccgcctgagctccaccttctcagatcagcagtagcattagattctcataggagaacgcaccctgttgtgaaccgtgcatgtgagggatctaggttgcgctgtccttatgagactctaatacctattgatctgtcactttctcccatcacgctcaggtgggaccatccagtttgcaggaaaacgagcttaacacgcccactgattctacattatggtgagttctataattattttattatatattacagtgtactaatggaaataaagtgcctaataaatg a score=5411.0 s hg17.chr17_random 282246 61 + 2618010 agcagcattagatgctcataggagaacgcaccctgttgtgaaccgtgcatgtgagggatcg s panTro1.chrUn_random 70849099 61 + 240967748 agcagcattagattctcataggagaacgcaccctgttgtgaaccgtgcatgtgagggatct a score=3502.0 s hg17.chr17_random 282307 37 + 2618010 aggttgcgctgtccttatgagaatctaatacctattg s panTro1.chr20_random 30336252 37 - 34336811 aggttgcgctgtccttatgagaatctaatacctattg a score=8834.0 s hg17.chr17_random 282344 115 + 2618010 atctgtcactttctcccatcacgctcaggtgggaccatccagttgcaggaaaacaagcttaacacgcccactgattctacattatggtgagttctataattattttattatatat s panTro1.chr6_random 18888437 114 - 67355074 atctgtcactttcttccatca-attcagatgggaccatcttgttgcaggaaaataagcttaacatgtccactgattctacattatggtgagttctataattatttcattatatac a score=2346.0 s hg17.chr17_random 282467 29 + 2618010 aataatggaaataaagtgcctaataaata s panTro1.chr1 228860181 29 - 229575298 AATAATGGAAATAAAGTCCCTAATAAATG a score=11137.0 s hg17.chr17_random 282496 136 + 2618010 caaatgtgcttacatcTTTTGGCCCAGCTCCTACCTCCCGGCAGCCTCTCCAGGCCCAGAACTTTCTCCAGTCAGCCTCTACAGACCAAGCTCATGACTCTCAATGGCCTATTTAGGCCCATACCCTACGTCACGG s panTro1.chr6 116699479 135 - 161576975 taa-tctgcttaaatcTTTTGGCCCAGCTCCTACCTCCCGGCAGCCTCTCCAGGCCCAGAACTTTCTCCAGTTGGCCTCCACAGACCAAGCTCATGACTCACAATGGCCTATTTAGGCCCATACCCTACCTCACGG a score=14110.0 s hg17.chr17_random 282632 99 + 2618010 CAGCCTCCGCAGATGAGGCTACTGCCTCACAACAGCCTCCACAGGCACAGCTCCATCGTTACAATGGCCTCTTTAGACCCAGCTCCTGCCTC---CCAGCCT s panTro1.chr6 116699614 99 - 161576975 CAGTCTCCGCAGATGAGGCTACTGCCTCACAACAGCCTCCACAGGCACAGCTCCATCGTTACAATGGCCTCTTTAGACCCAGCTCCTGCCTC---CCAGCCT s rn3.chr1 30571552 102 + 268121971 CAGCCTGCACTGCTGCATCTGCACCCTCACATCAGCCTGCACTGCTGCATCTCCACCCTCACATCAGCCTGCACTGCTGCATCTGCACCCTCACATCAGCCT a score=4911.0 s hg17.chr17_random 282731 36 + 2618010 TCTCTCCAGGCCCTGAACTTTCTCAAGTCAACCTCA s panTro1.chr6 116699713 36 - 161576975 TCTCTCTAGGCCCTGAACTTTCTCAAGTCGACGTCA s rn3.chr1 30571654 36 + 268121971 GCACTGCTGCATCTGCACCCTTTTACCTTCAGCTCA s danRer1.chr7 44705686 36 - 45413732 TCTCTCCAGTCCCAGAACATCCTCCAGTGTCAGTCC a score=5573.0 s hg17.chr17_random 282767 74 + 2618010 CCAGGCCCAGCTCATGCTTCTTTGCAGCCTCTCCAGGCCCAGCTCCTGCATCTTGGTGGCCCCTCCAGGCCCAG--- s panTro1.chr6 116699749 73 - 161576975 CCAGGCCCAGCTCATGCTTCTTGGCAACCTCTCCAGGCCCAGCTCTT-CCTCCCGGCGGCCTCTGCAGGCCCAG--- s danRer1.chr7 44705722 61 - 45413732 CAGAGCTCAGCTCA---GTGTTGG-------TCCCAGCCCAACTCCT-TGGCCTGCCAGCACC-----ACCCAGACG a score=27066.0 s hg17.chr17_random 282841 319 + 2618010 CCTCTGCCTCCCGTCAGCCTCTACAGTCCGAACGTCT-GCCTCACAGCAGATTCTTTACGCCCAGCATCTACCTCACTGTGGATCCCCCAAGCCAAGCTCCCAAC-CTTTCAGCAGCTTCTACACACCCAGCTCCTGC---------CACCCAGTGGCCTCTTTAG-GCCAAGCTCATGCTTCACAAGGGC----CTTTCCAGGCC-----CAACTTTTGTCTCATGGCAACCTTCCCTGGCCAGATTCCTGCCTGTCTCCCAGCAGCCTAGACAGGCCCAGGTCTTGTCTCACACTGGCCTCTCTACATCCA--GCTTATGCCTCACGGTGGCCTCTCCAC s panTro1.chr6 64142876 319 + 161576975 CCTCTGCCTACCGTCGGCCTCTACAGTCACAACATCT-GCCTCACAGAAGATTCTTCAGGCCCAGTATCTGCCTCACTGTGGACCCCCCAAGCCAAGCTCCCAAC-CTTTCAGCAGCTTCTACACACCCAGCTCCTGC---------CACCCACTGGCCTCTTTAG-GCCAAGCTGATGCCTCACAAGGGC----CTTTCCAGGCC-----CAACTTTTGTCTCATGGCAACCTTCCCTGGCCAGATTCCTGCCTGTCTCCAAGCAGCCTAGACAGACCCAGGTCTTGCCTCACACTGGCCTCTCTACATCCA--GCTCATGCCTCACGGTGGCCTCTCCAG s danRer1.chr7 44705783 298 - 45413732 TCTCGACCTGCCGGCGCCCCCTA-------GACGTCTCGCCTTGCCGGCG-------CCACCCAG-ACGGCTCGCCCTGCCGGCTCCCCA---CAAGCCTCCAGCTCTGCCAGCTCCCCGCAAAGCTCCAGGCCCTCCACAGTTCCACGCTCCAGGGCCTCCGCAGTTCCATGCTCCAGGCCCACCGCAGTTCCACTTTCCAGGCCTTCTGCAGCTCCATGCTCTAGGC-----CCTCTG--CAGTTCCAT-----TCTCCAGGC--CCTATACAGTTCCA--------CTCTCCAGGCCTTCCGCAGCTCCACCGTCCAGGCCCTCC----GCAGCTCCAC a score=19975.0 s hg17.chr17_random 283160 239 + 2618010 GCCCAACTCCTGTCC-----CAGG--------ACGTCATCTCCGGGCCCAAAACTTACTCAAGTC--AGAC--TCTCTAGTCCCAACTGCTGCCTCCTGGTGGCCTATGAAGGCCCAAAATCTCCTCA----------AGTTGACCTGTCCAGGCC-----CACCTCCTGCCTCCTGTCAG----------CGTCTACAGGCCC----AACCTCTGCCTCATGGGGGCTTCTCCAGGCCCACCTCTTCCTC-TTGGCTGGG---TCTACAGGCACAACTGCTG---CCTCAC s panTro1.chr6 64143195 239 + 161576975 GCCCAGCTCCTGTCC-----CAGG--------ACGTCATTTCCAGGCCCAAAACTTCCTCAAGTC--AGCC--TCTCTAGTCCCAACTGCTGCCTCCTGGTGGCCTATGAAGGCCCAAAATCTCCTCA----------AGTTGACCTCTCCAGGCC-----CAGCTCCTGCTTCCTGTCAG----------CGTCTACAGGCCC----AACCTCTGTCTCATGGCAGCTTCTCCAGGCCCAGCTCTTCCTC-TTGGCTGAG---TCTACAGGCACAACTGCTG---CCTCAC s fr1.chrUn 20938192 207 - 349519338 GTCCACCTCATGTCC-TCCACAGGTCCACTTAATgtcctctgcaggtcca------cctcatgtc-----c--tctgcaggtcca----------cctcatgtcctctgcaggtccA------CCTCG-------------TGTCCTCCACAGGTC-----CACCTCCTGTCCTCTGCAGGTCACTCGTGTCCTCCACAGGTCC----ACCTCCTGT----------CCTCTGCAGGTCCACCTCTTGTCC-------------TCCACAGGTCCA----------CCTCAT s danRer1.chr7 44706081 229 - 45413732 -----GCTCCAGGCCCTCCGCAGTTCC-----ACG----CTCCAGGCCTTACGCAACTCCATGCTCCAGGCCCTCTGCAGTTCCA--------GTCTCCAGGCCCTATACAGTTCCA----CTCTCCAGGCCTTTCGCAGCTCCACCGTCCAGGCCCTCCGCAGCTCC-----------------------ACTCTCCAGGCCCTCCGCACCTCCAC------------TCTCCGGGCCCTCCGCACCTCCACTCTCCGGGCCCTTCGCAGCTCCACTCTCTGGGCCCTC-- a score=1309.0 s hg17.chr17_random 283399 6 + 2618010 AACAGC s panTro1.chr6 64143434 6 + 161576975 AACAGC s danRer1.chr7 44706310 6 - 45413732 CACAGC a score=-209.0 s hg17.chr17_random 283399 14 + 2618010 AACAGCCTTTTTTG s danRer1.chr7 44706310 12 - 45413732 CACAGCTCTATG-- a score=191.0 s hg17.chr17_random 283405 2 + 2618010 CT s panTro1.chr6 66396537 2 + 161576975 CT a score=993.0 s hg17.chr17_random 283407 6 + 2618010 TTTTTG s panTro1.chr6 66396539 6 + 161576975 TTTATG s danRer1.chr7 44706316 6 - 45413732 TCTATG a score=4245.0 s hg17.chr17_random 283413 88 + 2618010 GCCCAGTTCCTGTCCAGCTC-ATGGC----GGCCAATGTAGGCCCAAAACTTCCTCAAGTCA----AACT-----CTCCAGGCCCACCTTCTGCTTCCCGGT s panTro1.chr6 66396545 88 + 161576975 GCTCAGCTCCTGCCCAACTA-CTGCC----GGCCTTTGTAGGCCCAAAACTTCCTCAAGTCA----AGCT-----CTTTAGTCCCACCTTCTGCCTTGCAGT s fr1.chrUn 20938399 76 - 349519338 GTCCTCTGCATTTCCACCTC-GTGT-------CCTCCACAGGTCCA------CCTCATGTC-------CT-----CTGCAGGTCCACCTCATGTCCTCCGCA s danRer1.chr7 44706322 98 - 45413732 CTCCGGGTCCTCCTCAGCTCTATGCTCCGGGTCCTCCGTAGCGCCA----CGCCACAGGTCGCCCCAGCTACATAATCCTGGCCCTCCATCCCTCCCCCTGT a score=8033.0 s hg17.chr17_random 283501 181 + 2618010 GGC---------ATCA---ACAGGCCCAGCTTTGACTTGAGAACAGCCTCTGCAGGCCCTGCTCTTGCCTCCCAGGGGCT--TTTTCCA--GGCCCAGCTCTTGCCTCATGGCGGC-----TGCCCCAGGCCAAATTTCTGCCTG-CCTGCCAGCAGCCTCAACAGGCACAGCTCCTCCCTCACAGTGGCCCATTTAGGCCCA s panTro1.chr6 66396633 183 + 161576975 GGC-----------CATGTACAGACCCAGCTCTGGCTTGAGAACAGCCTCTGCAGGCCCCGCTCTTGCCTCTTA---GCTCCCTCTCCAAGGGCCCATCTCTTGCCTCACAGTGGCTTGCGTG-----GGCCAAGTTCCCGCCTG-CCTCCCAGCAGCCTCAACAGGCCTAGCTCCTCCCTCACAATGGCTTGTTTAGGCCCA s fr1.chrUn 20938475 165 - 349519338 GGTCCATTTAATGTCCTCTGCAGGTCCACCTC----------GTGTCCTCTGCAGGTCCACCTCATGTCCTCCA-------------CA--GGTCCACCTCATGTCCTCTGCAGGTC----CACCTCATGTC----CTCTGCAGGTCCATCTCATGTCCTCTGCAGGTCCACCTCGTGTCCTCCACAGGTCCACTTAA----- a score=2285.0 s hg17.chr17_random 283682 122 + 2618010 ACTCATGACTGTGAGGCCATT-----TC-----CAGGCCTAGTGCCTGCCTCGTGGCTGACTCTTGAAGCCCAAAACTTCCTCAAATCAGCCTTTT---GCCCAACTTCTGTCTAC-TGTCGGACTCTACAGG-TCA s panTro1.chr9_random 22371627 126 + 43970871 ACTCATGCC-----GGTCATCGCCTATC-----CAGGTCCAGTTCCTGCCTCCTGGCATACTCTCAGAGCTGCAAACTTACTCAAATCAGCAGTTTCAGGCCCAGCTCCTGCCTAC-TGTTGGCCTCTACAGGCCCA s fr1.chrUn 20938640 126 - 349519338 --TCTCCTCTGCAGGTCCACCTCATGTCCTCCGCAGGTCCACCTCGTGTCCTCC-ACAGGTCC----ACCTAATGTCCTCTGCAGGTCCACCTCAT---GTCCTCCGCAGGTCCACTTAATGTCCTCTGCAGGTCC- a score=6374.0 s hg17.chr17_random 283804 78 + 2618010 GCCTCTGCCTCACAGTGGACCCTCCAGACCCAGATGGTGTCTCACTGTGGCATCCTCAGGCGAAGCTCCTGCCTTTCG s panTro1.chr6 66396959 78 + 161576975 GCCTCTACCTCACAGTGCACCTTCCAGGCCCACCTCTTGCCTCACCGTGGCCTCCTCTGACCAGGTTCCTGCCTTTCG s fr1.chrUn 20938766 59 - 349519338 ------ACCTC---GTGTCCTCCGCAGGTCCACCT----------CGTGTCCTCCGCAGGTCCACCTCGTGTCCTCCG a score=0.0 s hg17.chr17_random 283882 10 + 2618010 GCAGCCTCTC a score=100.0 s hg17.chr17_random 283882 1 + 2618010 G s panTro1.chr6 66397037 1 + 161576975 G a score=873.0 s hg17.chr17_random 283883 9 + 2618010 CAGCCTCTC s panTro1.chr6 116699961 9 - 161576975 CAGCCTCTC a score=10075.0 s hg17.chr17_random 283892 96 + 2618010 CAGGCCCAGCTCCTCCGGCCTCCCAGTGGCCTCTTTCA-GCCCAGCCCAGCTCATGCCTCCCGGCGGCCTTCCCAAGCCCCGCTTTTGACTTTCGGT s panTro1.chr6 116699970 96 - 161576975 CAGGCCCAGCTCCTCCTGCCTCCCACTGGCCTCTTTCG-GCCCAGCCAAGCTCATGCGTCCCGGCGGCCTTCCCAAGCCCCGCTTTTGACTTTTGGC s fr1.chrUn 20938825 90 - 349519338 CAGGTCCA---CCTCGTGTCCTCCGCAGGTCCACCTCGTGTCCTCCGCAGGT----CCACCTCGTGTCCTCCGCAGGTCCACCTCGTGTCCTTGGGT a score=16703.0 s hg17.chr17_random 283988 189 + 2618010 GGCCTCTGCAGGCCTCGACAAGGCC--CAGCCTCCTGCCTCCCGAAGGCCTGCACAGGCCC----AGCCTCTGCCTCACAGCGGACTCTCCACGCCCAGCTAGCTGTTGCTTCACTGCGGCCTCCCGAGTCCAAAGCTCCTGCCTCTCGGCCGCTTCGGCAGGCCCAGCTCCCGCCTGCCAGTGGCCTCTTCAGG s panTro1.chr6 116700066 189 - 161576975 GGCCTCTGCAGGCCTCGACAAGGCC--CGGCCTCCTGCCTCCCGAAGGCCTGCACAGGCCC----AGCCTCTGCCTCACAGCAGACTCTCCACGCCCAGCTAGCTCTCGCCTCACTGTGGCCTCCCCAGTCCAAAGCTCCTGCCTCTCGGCCGCTTCGGCAGGCCCAGCTCCCACCTGCCAGTGGCCTCTTCAGG s fr1.chrUn 88522947 156 - 349519338 GGGCTCTTCAGG-CTCTTCAGGCTCTTCAGGCTCTTCAGGCTCTTCGGGCTCTTCGGGCTCTTCGGGCTCTTTATGCTCTTCGGGCTCTTCGGGCTCTTCAGGCTCTTTATGCTCTTCGGGCTCTTTA------------TGCTCTTCGGGCTCTTC--------------------------AGGCTCTTTATG a score=13687.0 s hg17.chr17_random 284177 365 + 2618010 CCCATGGGGCTCATTCCTGACAACGGCCTTTCCA--GGCCCAG-TTTTCCCTTCCGGCGGCCTCTCCGGGCCCAGAAC-CTCCTCAAG-------------TCGGCCTCTCCAGACCCACTTGCACCCTCCGGGC-----ATCCTCTCCGG-GCCCAGCTCTTCTTCCTG--------GTTGGG-TCTCCAGG----CCC-------------GATTCCTGCCTCTCAACAACCTCTTTGGACTC--AGTGCCTACCCATCT-CCTGGCGGCCTTGGTCGGCCCACAGCTTCCTCAAGC----CAAGCTCCCCAGGCCCAGGTCAGGCCTCAC-----GGTGGCCTCTC-------CAGGATG-----AGCTCCTGCCCTCCTATGGCATCTCC-----AGGCCCCAAATGGTCTCCGGTCGGTGGGCTCCTCCACGCCAAGG s panTro1.chr6 116700255 366 - 161576975 CCCATGGGGCTCATTCCTCACAACGGCCTTTCCA--GGCCCAGTTTTTCCCTTCCGGCGCCCTCTCCGGGCCCAGAAC-CTCCTCAAG-------------TTGGCCTCTCCAGACCCACTTACAGCCTCCCGGC-----GTCCTCTCCGG-GCCCAGCCCTTCCTCCTG--------GCTGCG-TCTCCAGG----CCC-------------GACTCCGGCCTCCCAACAAGGTCTTTGGACTC--AGCTCCCGCCCAGCT-TCCGGCGGCCCTGGTAGGCACACAACTTCCTGAAGC----CAAGCTCCCCAGGCCCAGCTCAGGCCTCAC-----GGTGGCCTCTC-------CAGGCTC-----AGCTCCTGCCCTCCAACGGCGTCTCC-----AGGCCCCAAACGGCCTCCGGTCGGTGGGCTCCTCTAGGCCCAGC s fr1.chrUn 88523103 384 - 349519338 CTCTTCGGGCTCTTTATGCTCTTCGGGCTCTCCA--GGCTCTT-TATGCTCTTCGGG----CTCTTCAGGCTCTTTATGCTCTTCAGGCTCTTTATGCTCTTCGGGCTCTTCAGGCTC-TTTATGCTCTCCAGGCTCTTTATGCTCTCCAG------GCTCTTTATGCTC--------TTCGGGCTCTTCAGG----CTCTTTATGCTCTTCGGGCTCTTTATGCTCTTCGGGCTCTTCAGGCTCTTTATGCTCTCCAGGCT-CTTCGGGCTCTTTATGCTCTC-CGGGCTCTTCGGGCTCTTTATGCTCTTCGGGCTC--TTTATGCTCTTC-----GGG---CTCTT-------CGGGCTCTTTA-TGCTCAGGCTCTTCA--GGC-TCTTC-----AGGCTCTTTATGCTCGTC-----ATGGGCTTCATCTTGCGAATT s danRer1.chrNA 81178266 376 - 390413307 CCCTAGGGGCTTCTGACAC-CAGCAAGTTCCCCAGGGGTCCAC-CTCTCCCCCTAGACTTGCAGTAGAGGCCCCAGGG-TGACCCATG---------------GCCCTCCACATAGGGGCTTGTGACCCC--AGC-----AAGCTACCCAGGGTCCTACATATCTCCCTGGACTTGCAGTAGAG-TCCCCAGGGTACCCC-------------GTGGCCCTCCGCCTA--GGGGCCTCTGAGTTC--AG-------CAAGCTACCCAGGGGTCCACATCTCTACCTGGA--CTTACAGT----AGAGAACCCAGGGTAC--CCCGTGGCCCTCCACCTAGGGGCCTCTTAACCCAGCAAGCTACCCAGGGGTCCAGCTCTCTGCCTGGACTTGCAATAGAGGCCCCAGGGTGCCCCC-----TTGCCCTCCAC----CCAAGG a score=0.0 s hg17.chr17_random 284542 8 + 2618010 TTGGGCCT a score=1074.0 s hg17.chr17_random 284542 6 + 2618010 TTGGGC s panTro1.chr6 116700621 6 - 161576975 TTGGGC s fr1.chrUn 88523487 6 - 349519338 TCTGGC a score=191.0 s hg17.chr17_random 284548 2 + 2618010 CT s panTro1.chr6 116700627 2 - 161576975 CT a score=626.0 s hg17.chr17_random 284550 54 + 2618010 CCCGGCGACCGCCGCAGGCNCCAANGNTTGTNNCCNTGNAAGTCGGGCTCTCCC s panTro1.chr6 116700629 47 - 161576975 CCTGGCAGCCTCTGCAGGCCCAAA------TCGTCCTG-AAGTCGGCCTCTCCA s danRer1.chrNA 81178642 35 - 390413307 CCTACTGACCCCAGCAAGCT-------------------ACCCAGGGCTCCACC a score=0.0 s hg17.chr17_random 284604 5 + 2618010 GGCCC a score=500.0 s hg17.chr17_random 284604 5 + 2618010 GGCCC s panTro1.chr6 116700676 5 - 161576975 GGCCC a score=25991.0 s hg17.chr17_random 284609 375 + 2618010 TGCCTCCCAGCAAGTAAGCAAGCTCTTTTGGCTCAACTCCTGCCCAGCTCCCAACCGCCTTTGTAGGCCCTGAACTTTCTCCAGCCAAG---CTCTGAGGGC-CCACCTCCTGCCTCCTGGTGGCCTGTACAGTTCTAGCACTGGTTGGAGAACAGCCTCTGCAGGCCCCGCCCTTGCCTCCCAGGGGCCTCTCCAGGCCCAGCTCTTGCCCCCACGGCGGCCTCCCGGGGCCAAGTCCCTGCCTGCCTCCCAGCAGCCCGCGTGCGGCCCAGCTCCTCCCTCACGGTGGCCT----GTTGATGCCCAACTCATGCCTCTGGTACCCTGCCCAGAGGCGTGAGCCCCTGCC---TCACNCNGG----CTCCTCCCNCGCTGAGAGAGGTC--- s panTro1.chr6 64160955 369 + 161576975 GGCCTCCCAGC----AAGCAAGCTCTTTTGGCTCAGCTCCTGCCCAGCTCCCGCCGGCTTTTGTAGACCCTGAACTTTCTCCAGCGAAGCACCTC---AGGC-CCACCTCCTGCCTCCCGGTGGCCTGTACAGGCCCAGCTCTGGCTGGAGAACAGCCTCTGCAGGCCCCGCTCTTGACTCCC-GGGGCGTTTCCAGGCCCAGCTCTCG-CCTCACGGCGGCCTCCCGGGACCAAGTCCCTGCCTGCCTCCCGGCAGCCTGTGTGCGGCCCAGCTCCTCCATCACGGTGGCCT----GTTGATGCCCAACTCATGCCTCTGGCACCCATTCCAGAGGCGTGAGCCCCTGCC---TCACACTGG----CCTCTCTCATGCTGAGAGAAGTC--- s danRer1.chrNA 81178677 342 - 390413307 TCTCTCCCTGGATTATAGTAGAGGCCCTAGGCTGCCCTCTGGCCCTCCACCTAGGGGCCTCTG--------------ACCCCAGCAAGCTACCCA---GGGCTCCACCTCT--CTCCCTAGGGGCTT--------CTGACGCCAGCAAGCTACCCAGGGCTTCACCTCTCTCCCTGGACTTGCAGTAGAGTCCCCAGGGTGCCCCCTTGCCCT--------CCACCCAAGGCCTA--------CTGAC-CCCAGCAAGCTACCCAGGGCTCCACCTCTCTCCC----TGGACTTATAGTAGAGGCCCTAAGCTGCCCTCTGGCCCTCCACCCAGGGGCCTCTGACCCCAGCAAGCTACCCAGGGCTCCACCTCTCTCCCT---AGGGGCCTCT a score=12926.0 s hg17.chr17_random 284984 228 + 2618010 NGTGTGAGCCCTTGCCTCACACCANCCCCTCCCACGCGG--------ACAGAGGTCAGCATGAGCCCC------------------------------------------------TTGCCT---CACCCCGGCCCCTCCCACGTGGACAGAGGTCAGCGTGAGCCCCTTGCCTCACACCGGCCCCTCCCACGCTGAGAGAGGTC--AGTGTGAGCCCTTGCCTCACACC----GGCCCCTCCCACGCGGA-------CAGAGGTCAGCGTGAGCCCCTTGCCTCACACCGGCCCCTCCC s panTro1.chr20 61409077 273 - 61571712 AGCGTGAGCCCTTGCCTCACACCGGCCCCTCCCATGCTG--------AGAGAGGTCAGAGTGAGCCCCATGCCTCACACCGGCCCCTCCCATGCTGAGAGAGGTCAGCGTGAGCCCTTGCCT---CACACCGGCCCCTCCCACGCTGAGAGAGGTCAGCGTGAACCCCTTGCCTCACACCGGCCCCTCCCACGCTGAGAGAGGTC-----GTGAGCCCTTGCCTCACACC----AGCCCCTCCCATGCTGA-------GAGAGGTCAGAGTGAGCCCCATGCCTCACACCGGCCCCTCCC s danRer1.chrNA 81179019 243 - 390413307 GACACCAGCAAGCTACCCAGGGCTCCACCTCTCTCCCTGGACTTGCAGTAGAGGCCCCAGGGTGCCCA------------------------------------------------TTGCCTCTCCACCTAGGGGCCTCTGACCCCAGC--AAGCTACCGAGGGGTCCACCTCTCTCCCTGGACTTGC-------AATAGAGGCCCCAGGGTGCCCTCTGACCCTCCACCTAGGGGCCTCTGACACCAGCAAGCTACCCAGGGGTCCACATCTCTCCCTGGACTTGCAGTAGACGCCCCC a score=5965.0 s hg17.chr17_random 285212 81 + 2618010 ACGCTGAGAGAGGTCAGTGTGAGCCCTTGCCTCACACCGGCCCCTCCCACGCGGACAGAGGTCAGCGTGACCCCCTGCNTC s panTro1.chr20 61409350 81 - 61571712 ACGCTGAGAGACGTCAGCGTGAGCCCTTGCCTCATACCTTCCCCTCCCACGCTGAGAGAGGTCAGCGTGAGCCCTTGCCTC a score=21222.0 s hg17.chr17_random 285295 266 + 2618010 CAGGCCACCGTGAGGGAGGAACAGGATCGCACTCGGGCTNCTGGGAGGTAGGCAGGGACTTGGGCCTGGGAGGTCGCGGTGGGGCGAGAGCTGGGCCTGGAGACTNCCCTGGGAGGCAACAGCGGGGTCTGCAGACGCCCTTCTCCAGCCGGAGCTGGGACTGTTCAGTCACTGGGAGAAGGGATGTGGGTCTGAAGAGCTTGGTTGCAGAAACTTCGGGGTCTACAAAGGCAGGCGGGAGCTGAGCCAAAAGAGCTTGTTTGCTG s panTro1.chr20 61411542 266 - 61571712 CAGGCCACCGTGAGAGAGGAGCAAGGTCGCACGCGAGCTGCTGGGAGGCAGGCAGGGACTTGGGCCTGGGAGGTCGCGGTGGGGCGAGAGCTGGGCCTGGAGACACCCCTCTGAGGGAACGGCGGGGCCTACAGACTCTGTTCTCCAGCCGGAGCTGGGACTGTTCAGGTACTGGGAGGCGGGATGTGGGTCTGAAGAGCTTGGTTGCCGAAACTTCGGGGTCTACAAACGCAGGCGGGAGCTGAGCCAAAAGAGCTTGTTTCCTG a score=4259.0 s hg17.chr17_random 285561 58 + 2618010 GGAGGTGGGAGATGCAGCCAGGAGGAACAGCTGGGCAATGCGGGAGGCANNGGCCAGG s panTro1.chr1 6040857 57 - 229575298 GGAGGCGGGAGATGCAGCCAGGAGGAACAGCTGGGCCATGCGGGAG-CGGAGGCCAGG a score=24505.0 s hg17.chr17_random 285619 316 + 2618010 CCTCCTCAAGTTGGCCTCTC-AGACCCACTTGCAGCCTCCCGGCGCCCCCTCCGGGCCCAGCTCTTCCTCCTGGCTGCATCTCCAGGCCGGACTCTGGCCCGACTCCAGGTCCCNACAACGTCTTTGGACTCAGCTCCTGCCCAGCTCCCAGCGGCCCTGGTAGGCCCACAACTTCCCTAAGCCAAGCTCCCCAGGCCCAGCTCAGGCCTCGCGGTGGCCTCTCCAGGCTCAGCTCCTGGCCCTCCGATGACATCTGCAGGCCCCAAATGGCCTCCGGTCGGTGGGCTCCTCTAGGCCCAGCTTGGGCCTCCCGGCG s panTro1.chr6 116702220 306 - 161576975 CCTCCTCAAGTTGGCCTCTCCAGACCCACTTACAGCCTCCCGGCGTCCTCTCCGGGCCCAGCCCTTCCTCCTGGCTGCGTCTCCAGGCCCGACTCCGGCC----------TCCCAACAAGGTCTTTGGACTCAGCTCCCGCCCAGCTTCCGGCGGCCCTGGTAGGCACACAACTTCCTGAAGCCAAGCTCCCCAGGCCCAGCTCAGGCCTCACGGTGGCCTCTCCAGGCTCAGCTCCTG-CCCTCCAACGGCGTCTCCAGGCCCCAAACGGCCTCCGGTCGGTGGGCTCCTCTAGGCCCAGCTTGGGCCTCCTGGCA a score=10060.0 s hg17.chr17_random 285935 72 + 2618010 GCCTCTGCAGGCCCAAATCGTCCCGAAGTCAGTCTCTCCAGGCTTAGCTCCAGCCTCCCGGCGGCCTCTGCA s panTro1.chr6 116702526 72 - 161576975 GCCTCTGCAGGCCCAAATCGTCCTGAAGTCGGCCTCTCCAGGCCCAGCTCCAGCCTCCCGGCGGCCTCTGCA s fr1.chrUn 306625742 60 + 349519338 GCCTCTG-----CCAGAACCTCCTGGAGCCAGTCTCTCGCCGCTTAG--CCAACCTACC-----TTTCTGCA a score=4775.0 s hg17.chr17_random 286007 53 + 2618010 GGCCCAAGTCGTCCTCAAGTCGGCCTGGAAGTGGGCCTGGAAGAGCAGCAAGT s panTro1.chr6 116702598 53 - 161576975 GGCCTAAGTCGTCCTCAAGTCGGCCTGGAAGTGGGCCTGGAAGAGCTGCAAGT a score=11822.0 s hg17.chr17_random 286060 105 + 2618010 CGGCCTCCCTGGGCCCAGCTCCGTCCTCTCGACGGCCTCTCCAGGTGCAAAACTTCCTCGAGTCAGCCTCTCCAGGCCCAGCTCCTCCTGCCTCCCAGTGGCCTC s panTro1.chr6 116702651 105 - 161576975 CGGCCTCCCCGGGCCCAGCTCCGTCCTCTCGGCGGCCTCTCCAGGTGCAAAACTTCCTCGAGTCAGCCTCTCCAGGCTCAGCTCCTCCTGCCTCCCAGTGGCCTC s fr1.chrUn 306625836 90 + 349519338 CTGCCTCGCTGTGGCTGATGGCGTCCTGCTG-----TTTTCCACGTG---GACCTCCGACTGTGGGCCTCTTCCG-------TCCTCGTGGAGCTCGGGGGCTTC a score=28584.0 s hg17.chr17_random 286165 298 + 2618010 TTTCGGCCCAGCCCAGCTCATGGCTCTCGGCGGCCTTCCCAGGCCCCGCT----TTTGACTTTTGGCAGCCTCTTCAGGC----GCAGAACTTGATCTCCAGGCGGCCTTTGCAGGCCCGGCCT---CCTGCCTCTCGAAGGCCTGCACGGGCCCGGCC------TCGGCCTCGGCCTCACAGCGGACTCTCCACGCCCAGCTAGCTCTCGTCTCACTGCGGCCTCCCCAGTCCAAAGCTCCTGCCTTTCGGCCACTTCGGCAGGTCCAGCTCCTGCCTGCCAGTGGCCTCTTTAGGCCCAGCTCATTCCTCACG s panTro1.chr6 116702756 292 - 161576975 TTTCGGCCCAGCCCAGCTCATGGCTCTCGGCGGTCTTCCCAGGCCCCGCT----TTTGACTTTTGGTGGCCTCTTCAGGC----CCAGAACTTGACCTCCAGTCGGCCTTTGCAGGCCCAGCCT---CCTGCCTCTCGAAGGCCTGCATGGGCC------------CGGCCTCGGCCTCACAGAGGACTCTCCACGCCCAGCTAGCTCTCGCCTCACTGCGGCCTCCCCAGTCCAAAGCTCCTGCCTTTCGGCCACTTCGGCAGGCCCAGCTCCTGCCGGCCAGTGGCCTCTTTAGGCCCAGCTCATTCCTCACA s fr1.chrUn 306621612 265 + 349519338 -TCCAGGCCCCACCAATACGTGGCCCTCGGCTGCCGGTCCAGGCCCCACCCATACGTGGCCCTCGGCTGCCGGTCCAGGCCCCACCGATACGTGGCCCTC-GGCTGCCGGTCCAGGCCCCACCCATACGTGGCCCTCGGCTGCCGGTCCAGGCCCCACCGATACGTGGCCCTCGGC------------------TGCCGGTCCCGGCCCCACCCATATGTGGCC-----------------------CTCGGCT------GCCGGTCCAGGCCCCACCGATAAGTGTCTGTTATTGAGCGATC-CAGTGTTCACG a score=16207.0 s hg17.chr17_random 286463 196 + 2618010 TCGGCCANTTCCANGGCCCCGTTTTTCCCTTCCGGCAGCCTCTTGGCCTCTAATTTGTTTATCTTTTGTGTATAAATCCCAAAATATTGAATTTTGGAATATTTCCACCATTATGTAAATATTTTGGTAGGTAATTTATTTGGAGTGAGTTTCTGCGCCAAGCCCGAATTTTTTATTTTATTTTCCTTATTATTTG s panTro1.chr6 116703048 194 - 161576975 GCGGCC-TTTCCA-GGCCCCGTTTTTCCCTTCCAGCAGCCTCTTGGCCTCTAATTTTTTTATCTTTTGTGTATAAATCCCAAAATATGGAATTTTGGAATATTTCCACCATTATATAAATATTTTGGTAGGTAATTTATTTGGAGTGAGTTTCTGCACCAAGCCCGAATTTTTTATTTTATTTTCCTTATTATTTG a score=288133.0 s hg17.chr17_random 286659 465 + 2618010 GTGTTAAACAGGTTTAATGACGGTCATGGCAACTTTTTGGCACAATGAAAAATATCGCCCACGATCAACGTGTTCTG-TTCTG-GGGAAGGGGGCAAAGGCAGGGTGAATCACTTTCTTAAAAAGTATAGCTCAAGTTGGGAGTGCAGAGGGAATGGGGAGAAAACCCTCCCGCTGCCTGTGTCGAAGTGTAGGAGCCCCCAC-CCCCNNANTACTCNANCNNGAGTCCAGCCCCTCTGGGGAAAGA-AGGGGTGCATGAACTCCCC-CTAGTCCACAGGCG---CCTCCCTGTGGCCCAAGGCCCTCTTCACACTCCATCTTGTAGCCCCAGCAGGAGCTATTTTCTG------AAAAGTGAAAAGCTCTGAAGGTCCCACAATTCATGG--TATGTACAGGGGCTCGGAGGAGGGAAACTG-------------CCCAGCTTTCCC-CCGGCACA--------GCTGCAGGGGTAGGGGGTATAGATA-AGAGGAGCAGGCC s panTro1.chr6 116703242 462 - 161576975 GTGTTAAACAGGTTTAATGACGGTCATGGCAACTTTTTGGCACAATGAAAAATATCGCCCATGATCAACGTGTTCTGATTCTGTGGGAAGGGGGCCAAGGCAGGGTGAATCACTTTCTTAAAAAGTACAGCTCAAGTTGGGAGTGCAGAGGGAATGGGGAGAAAACCCTCCCACTGCCTGTGTCGAAGTGCAGGAGCCCCCAC-CCCC---ATACTC--ACCTGAGTCCAGCCCCTCTGGGGAAAGA-AGGGGTGCATGAACTCCCC-CTATTCCACAGGCG---CCTCCCTGTGGCCCAAGGCCCTCTTCACACTCCATCTTGTAGCCCCAGCAGGAGCTATTTTCCG------AAAAGTGAAAAGCTCTGAAGGTCCCACACTTCATGG--TATGTACAGGGGCTCGGAGGAGGGAAACTG-------------CCCAGCTTTCCC-CCAGCACA--------GCAGCAGGGGTAGGGGGTATATATA-AGAGGAGCAGGTC s mm5.chr7 119015659 461 - 133051633 GTGTTAAACAGCTTTAATCTCGGTCATTGCGGCTTCTCGGCACAGTAAGAAATATTGCACATGATCAACATGTTTTG-TTCTG-GGAATGGGGACAATGGTAGGGGGAATCACCTTCTTAGAAAGTACAACCCAAGTTGGGAGGGCAGAGGG--TGGGGAG--AATCCTCCCCATGCCTGTGGCAAAGTGCAGGAACCCCCCCACCCC---AAACTA--ACCTGAGTCCAGCCCCTCTGGGGAAAAAGGGGGGTGCATGAACTCCCCACTACTCCACAGGCATCTTCTCCCTGTGGCCCAAGGCTCATACTACCCTCCAGCTTGCAGCCCTCACAGGAGCCATTCTGCATAAAGTACAAGTGAAAAGCTCTGAAGGTCACACACTTCAGGT--TATCTACAAGAGCTCAGTGGAGGGTATCTG-------------CCCCTGCTGCCC-CCAGCACA----------------GGGAGGGAATATATATACAAGGGAACAGGCC s rn3.chr1 187474429 461 - 268121971 GTGTTAAACAGCTTTAATCTCGGTCATTGCGGCTTCTCGGCACAGTAAGAAATATTGCACATGATCAACATGTTTTG-TTCTG-GGAATGGGGACAATGGTAGGG-GAATCACCTTCTTAGAAAGTACAACCCAAGTTGGGAGGGCAGAGGG--TGGGGAG--AATCCTCCCCATGCCTGTGGCAAAGTGCAGGAGCCCCCCCACCCC---AAACTA--ACCTGAGTCCAGCCCCTCTGGGGAAAAAGGGGGGTGCATGAACTCCCCACTACTCCACAGGCATCTTCTCCCTGTGGCCCAAGGCTCATACTACCCTCCAGCTTGCAGCCCTCACAGGAGCCATTCTGCATAAAGTACAAGTGAAAAGCTCTGAAGGTCACACACTTCAGGTTATATATACAAGAGCTCAGTGGAGGGTATCTG-------------CCCCTGCTGCCCTCCAGCACA----------------GGGAGGG-ATATATACA-AGGGAAACAGGCC s canFam1.chr1 114255754 485 + 124897793 GTGTTAAACAGCTTTAATTTCGGTCATTTCGGCTTCTCGGCACAGTAAGAAATATTGCACATGATCAACATGTTTTG-TTCTG-GGGACGGGGACAAGGGTAGGGGGAATCACCTTCTTAGAAAGTACAACCCAAGTTGGGAGGGCAGAGGGGGTGGGGAGAGAACCCTCCCCATGCCTGTGGCAAAGTGCAGGAGCCCCCA--CCCC---AAACTA--ACCTGAGTCCAGCCCCTCTGGGGAAAAA-AGGGGTGCATGAACTCCCC-CTACTCCACAGGCA---CCTCCCTGTGGCCCAAGGCCCACACTACCCTCCAGCTTGTAGCCCTCACATGAGCCATTTTGCATAAAGTACAAGTGAAAAGGTCTGAAGGTAACACACTCCAGGT--TATATACAGGGGCTCGGTGGAGGCAGACTGTGCCCCTGCTTCCCCTCAGCTGCCCCCCATCACAGGGAGAAAGCTGTGGGGGGAGGGG--ATAGACC-AGAGGAGCAGACC a score=91.0 s hg17.chr17_random 287124 1 + 2618010 T s canFam1.chr1 114256239 1 + 124897793 T a score=14648.0 s hg17.chr17_random 287124 165 + 2618010 TTggccaggcgtggtggctcacgcctgtaatcccagcactttgggagggggaggcaggcagatcacgatgtcaggagatcgaaatcagcctggccaagatgatgaagccccgtctgtactaaaaatacaaaaattagccggacgtggtagcgtccacctgtaatc s panTro1.chr6 116703704 165 - 161576975 TTggccaggcgtggtggctcatgcctgtaatcccagcactttgggaggtggaggcaggcggatcacgatgtcaggagatcgaaatcagcctggccaagatgatgaagccccgtctgtactaaaaatacaaaaattagctggacatgttagcgtgcacctgtaatc a score=100.0 s hg17.chr17_random 287410 71 + 2618010 aaaaaaaaaaaaaaaaaaaaNNNGNANGNCNTNNNNCNNNCCNAANNNNAANGNNTNAANNGNNTNNNCNN s panTro1.chr6 130278688 70 + 161576975 aaaaaaaaaaaaaaaaaaaaGAGGCAGGCCTTACT-CTGTCCCAAACTGAAAGGATTAAATGGCTTTACCT a score=101595.0 s hg17.chr17_random 287481 182 + 2618010 GGGAGAAGATAACCATCCT--------GCCCTCCATTTCTACC-CCCACATACTGTCCATGTTCTCA---GGG----GGTACTGTGAGTCCTGGGATCTTT----GGGGTTGCCCACCTGCCTGTGGTAGTTATGGAGACCCCCAGGTGTTGAGGC-AGGGCTGGGGTGTCCCCTTCCAACCAGGTTGTCAAGGCCCCAACTC s panTro1.chr6 130278758 182 + 161576975 GGGAGAAAATAACCATCCT--------GCCCTCCATTGCTACC-CCCACATACTTTCCATGTTCTCA---GGG----GTTACTGTGAGTCCTGGGATCTTT----GGGGTTGCCCACCTGCCTGTGGTAGTTATGGAGACCCCCAGGTGTTGAGGC-AGGGCTGGGGTGTCCCCTTCCAACCAGGCTGTCAAGGCCCCAACTC s mm5.chr7 119016159 199 - 133051633 GGGAGGCGGTAACTATCCCACTGTCTGGCCCCCAATTCCTGCCATCTATATACTGTCCATATCCTGAGGGGGG----GGTACTGTGGGTCCTGGGGTCTTTAACAAGGGCCCCTCACCTGCCTGTGGCAGCTGTGGAAGGGCCAGAGGGAGGTGGTGAGGGCTGGGGAGCCCCCTCCCAGCCAGGCTGTCCAGGCCCAGGCTC s rn3.chr1 187474930 199 - 268121971 GAGAGGAGGCAACTATCCCACTGTCTGGCCCCCAATTCCTGCCATCTATATACTGTCCATATCCTGA---GGGGGTAGGTACTGTGGGTCCTGGGGTCTAT-TCAAGGGCCCCTCACCTGCCTGTGGCAGCTGTGGAAGGGCCAGAGGGAGGGGGAGAAGGTTGGGGAGCCCCCTCCCAGCCAGGCTGTCCAGGCCCAGGCTC s canFam1.chr1 114256280 187 + 124897793 GGGAGGAGGTAACCATCCT-------GCCCCCCCATTCCTGCCACCTACATACTGTCCATGTCCTGA---GGGG---GGTACTGTAGGTCCCGGGATCTTC---TCGGACCCCTCACCTGCCTGTGGCAGCTGTGGAGGGGCCGGGGGGTGGGGGGGATGGCTGGGGGGGGCCCTCCCAGCCAGGCTGTCCGGGACCCGGTTC a score=-615.0 s hg17.chr17_random 287663 3 + 2618010 T-GG s panTro1.chr6 130278940 3 + 161576975 T-GG s mm5.chr7 119016358 4 - 133051633 TGGG s rn3.chr11 42245746 3 - 87800381 -GGG s canFam1.chr1 114256467 3 + 124897793 -Tgg a score=13176.0 s hg17.chr17_random 287666 36 + 2618010 GGCAGAGGCAGTGGCAGGGCAGCCAGGGTTGCGCCA s panTro1.chr6 130278943 36 + 161576975 GGCAAAGGCAGTGGCAGGGCAGCCAGGGTTACGCCA s mm5.chr7 119016362 36 - 133051633 GGTGGAGGCAGTGGCGGGGCAACTTGGGCAGTGCCA s rn3.chr11 42245749 36 - 87800381 GGTGGAGGCAGTTGTGGGGCAACTTTGGCAATGCCA a score=23347.0 s hg17.chr17_random 287702 64 + 2618010 GAGCCTGAGCAGGTTGAGGTGGGGTCAG--------GCAGGGCTGGGAGTCAGGGCAGGGGCAGCAGCAGTG s panTro1.chr6 130278979 64 + 161576975 GAGCCTGAGCAGGTTGAGGTGGGGTCAG--------GCAGGGCTGGGAGTCAGGGCAGGGGCAGCAGCAGTG s mm5.chr18 71435373 72 + 91083707 GAGTCCGAGCTTGGAGAGATGGGATCAGGGCTCCCAGCAGGGCTTGGAGTGGGGATAGGAGTAGCAGCCATG s rn3.chr11 42245785 72 - 87800381 GAGTTGGAGCCTGGAGAGGTGGGGTCAGGGCCCCCAGCTGGGCTGGGAGTGGGGACAGGAGTAGCAGCCATG a score=3053.0 s hg17.chr17_random 287766 37 + 2618010 GACCTGCTATGCACACATCTTCTTCTCCAAGGTTTGT s panTro1.chr6 130279043 37 + 161576975 GACCCGCTATGTACACATCATCTTCTCCAAGGTTTGT a score=98579.0 s hg17.chr17_random 287803 122 + 2618010 GTGCAGAACATCCTGNCCCATGCTGCCCCAGCAGCTTCAGTTGGCACCTGCCCCAGT-CCAGCCTCTGGGAACCATGCAGCAGCTCCCAGCGGCCCTGCACCCACCACCAGCATCCGTTTCAC s panTro1.chr6 130279080 121 + 161576975 GTGCAGAACATCCTG-CCCATGCTGCCCCAGCAGCTTCAGTTGGCACCTGCCCCAGT-CCAGCCTCTGGGAACCATGCAGCAGCTCCCAGCGGCCCTGCACCCACCACCAGCATCCGTTTCAC s mm5.chr7 14030905 122 + 133051633 GTGCAGTACATCCTG-CCCACACTGCCCCAGCAGCTTCAAGTGGCACCTGCCCCAGCACCAGCCCCTGGGACCAAGGCAGCAGCTCCCAGTGGCCCTGCACCCACCACCAGCATCCGTTTCAC s rn3.chr1 80642501 122 + 268121971 GTGCAGTACATCCTG-CCCACACTGCCCCAACAGCTTCAAGTGGCACCTGCCCCAGCACCAGCCCCTGGGACCAAGGCAGCAGCTCCCAGTGGCCCTGCACCCACCACCAGCATCCGTTTCAC s canFam1.chr1 10637436 122 - 124897793 GTGCAGTACATCCTG-CCCACGCTGCCCCAGCAGCTTCAGGTGGCACCCGCCCCGGCACCAGCCCCTGGGACCAAGACAGCAGCTCCCGGCGGCCCCGCACCCACCACCAGCATCCGGTTCAC a score=300.0 s hg17.chr17_random 287925 1 + 2618010 C s panTro1.chr6 130279201 1 + 161576975 C s mm5.chr7 14031027 1 + 133051633 C a score=-126.0 s hg17.chr17_random 287926 11 + 2618010 TGCNNAGTTNG s panTro1.chr6 130279202 8 + 161576975 TGC--AGTT-G a score=53167.0 s hg17.chr17_random 287937 132 + 2618010 AAGATCCGTGAGGTGC-CCAGAAGATCATGCAGTCA-TCAGTCCCACGGAGCAGCCCGC-GAGGCTGAGGCTCCTCCCACTGGACCGCCCCCCAACTGGCACCACTGCTGCCCCTGCCCCTACTCTCAGCCTCAC s panTro1.chr6 130279210 132 + 161576975 AAGATCCGTGAGGTGC-CCAGAAGATCATGCAGTCA-TCAGTCCCACGGAGCAGCCCGC-GAGGCTGAGGCTCCTCCCACTGGACCGCCCCCCAACTGGCACCACTGCTGCCCCTGCCCCTACTCTCAGCCTCAC s mm5.chr7 14035065 134 + 133051633 AAGATCCGAGAGGTCCGCCAGAAGATCATGCAGGCAGCCACTCCCACAGAGCAGCCCCCTGGGGCTGAAGCCCCCCTCCCTGGACCACCCCCT-ACTGGCATGGCTGCTACTCCTGTCCCCACTCCCAGCCCTGC s rn3.chr1 80646632 134 + 268121971 AAGATCCGAGAAGTCCGCCAGAAGATCATGCAGGCAGCCACTCCCACAGAGCAGCCCCCTGGGGCTGAAGCCTCCCTCCCTGGACCACCCCCT-ACTGGCATGGCTGCTACTCCTGTCCCCACTCCCAGCCCTGC a score=864.0 s hg17.chr17_random 288069 9 + 2618010 GTGACTCTC s panTro1.chr6 130279342 9 + 161576975 GTGACTCTC a score=600.0 s hg17.chr17_random 288078 1 + 2618010 G s panTro1.chr6 130279351 1 + 161576975 G s mm5.chr7 119016361 1 - 133051633 G s rn3.chr1 187475132 1 - 268121971 G a score=26355.0 s hg17.chr17_random 288079 36 + 2618010 GGCAGAAGCAGTGGTGGGGCAGCCAGGGCAGCGTCA s panTro1.chr6 130279352 36 + 161576975 GGCAGAGGCAGTGGTGGGGCAGCCAGGGCAGCGTCA s mm5.chr7 119016362 36 - 133051633 GGTGGAGGCAGTGGCGGGGCAACTTGGGCAGTGCCA s rn3.chr1 187475133 36 - 268121971 GGTGGAGGCAGTGGCGGGGCAACTTGGGCAGTGCCA s canFam1.chr1 114256471 36 + 124897793 ggtggaggcagtggcggggcagccggagctgtgcca a score=0.0 s hg17.chr17_random 288115 1 + 2618010 A a score=91.0 s hg17.chr17_random 288115 1 + 2618010 A s panTro1.chr6 130279388 1 + 161576975 A a score=0.0 s hg17.chr17_random 288115 1 + 2618010 A a score=48212.0 s hg17.chr17_random 288116 63 + 2618010 GAGTCTGAGCCAGGTGAGGTGCGGTCAGGACCCCCA-CAGGGCTGGGAGTCAGGGCAGGGGCAG s panTro1.chr6 130279389 63 + 161576975 GAGTCTGAGCCAGGTGAGGTGCAGTCAGGACCCCCA-CAGGGCTGGGAGTCAGGGCAGGGGCAG s mm5.chr7 119016398 64 - 133051633 GAGTCCGAGCCTGGAGAGGTGGGGTCAGGGCCCCCAGCAGGGCTGGGAGTGGGGACAGGAGTAG s rn3.chr1 187475169 64 - 268121971 GAGTCCGAGCCTGGAGAGGTGGGGTCAGGGCCCCCAGCAGGGCTGGGAGTGGGGACAGGAGTAG s canFam1.chr1 114256507 64 + 124897793 gagtccgagccaggtgaggtggggtcggggcccccagcagggctgggagtggggacaggggcag a score=499.0 s hg17.chr17_random 288179 2 + 2618010 AA s panTro1.chr6 130279452 2 + 161576975 AA s mm5.chr7 119016576 2 - 133051633 GA s rn3.chr1 187475347 2 - 268121971 GA s canFam1.chr1 114256571 2 + 124897793 ca a score=40623.0 s hg17.chr17_random 288181 57 + 2618010 CAAACCTTGGAGGGGAAGATGTGTGCATAGTGGGCCTGGAGGGCGGCTGTGGCCTA----G---- s panTro1.chr6 130279454 57 + 161576975 CAAACCTTGGAGGGGAAGATGTGTGCATAGTGGGCCTGGAGGGCGGCTGTGGCCTA----G---- s mm5.chr7 119016578 61 - 133051633 CACACCTTGGATGGGAAGATGTCTGCGTAGCGGGCCTGGAAGGCTGCTGTGGCCTGGGCTG---- s rn3.chr1 187475349 57 - 268121971 CACACCTTGGATGGAAAGATGTCTGCGTAGCGGGCCTGGAAGGCTGCTGTGGCCTG----G---- s canFam1.chr1 114256687 61 + 124897793 CAGACCTTTGAGGGGAAGATGTCTGCGTAGCGGGCCTGGAAGGCTGCCGTGGCCTG----GGCTG a score=5166.0 s hg17.chr17_random 288238 12 + 2618010 TGGACAGGAAGA s panTro1.chr6 130279511 12 + 161576975 TGGACAGGAAGA s mm5.chr7 119016639 12 - 133051633 GGGACAGAAAGA s canFam1.chr1 114256748 12 + 124897793 GGGACAGAAGGA a score=273.0 s hg17.chr17_random 288250 1 + 2618010 A s panTro1.chr6 130279523 1 + 161576975 A s mm5.chr7 119016651 1 - 133051633 A a score=200.0 s hg17.chr17_random 288251 2 + 2618010 GC s panTro1.chr6 130279524 2 + 161576975 GC a score=43836.0 s hg17.chr17_random 290483 78 + 2618010 CAGATAAACAATGTTGTATAGGNA-CTTCAACACACCCCTGTACAATATTCCCACTTTGCTGACATAAGTTATGGAAAT s panTro1.chr1 228857322 78 - 229575298 CAGGTAAACAATGTTGTATAGGGAACTTCAACACACAC-TGTACAGTATTCCCACTTTGCTGACATAAGTTATGGAAAT s mm5.chrX 120276143 77 - 160634946 CAAATAAACAATTTTGTACAAGAA-ATTTAACACATTC-TGTACACTGTCTTCACTTTACTGTCATCATTTGTACAAAC s rn3.chr15 64177964 77 + 109774626 CAAATTAACAGTTCTGTACAAGAA-ATTTAACACCTTC-TGTACAGGGTCTTCACTTTGCTGTCATCATTTGTACAAAC s canFam1.chr9 26005178 77 + 53642819 CAAATAAACAATTTTGTACAAGAA-ATTTAACACATTC-TGTACAATGTCTTCACTTTGCTGTCATCATTTGTACAAAC a score=177503.0 s hg17.chr17_random 290561 252 + 2618010 TT--CATGGTTTACTTGAGTGTCGCTACCAGTATTTTGCTTCTCTGATGATTTTTATCAACTTCCTCATCTGTTAACTTCTCTCCAAGGTATGTCATGTCACGACATACTGNCCGCTGCACGAACATGGCCNAGT----------------------------------------------------------------------------------------GTCTTCC-TATTCAACATGTAGAATGCTTTCCTAATTTCTCTTTTTACTCTC--TGTCTTTGTGTTCTGCATTTTCCTTACTTTTATTGTCAGAAACTCCAGNAAAGTCAATCGTACTAAT-T s panTro1.chr1 228857400 250 - 229575298 TT-TCGTAGTTTACTTGAGTGTCGCTACCAGTATTTTGCTTCTCTGATGATTTTTATCAACTTCCTCATCTGTTAACTTCTCTCCAAGGTATGTCATGTCACGACATACTG-CCGCTGCACGAACATGGCC-AGT----------------------------------------------------------------------------------------GTCTTCC-TATTCAACATGTAGAATGCTTTCCTAATTTCTCTTTTTACTCTC--TGTCTTTGTGTTCTGCATTTTCCTTACTTTTATTGTCAGAAACTCCAG-AAAGTCAATCGTACTAAT-T s mm5.chrX 120276220 242 - 160634946 TCTTCGTAGTTTACCTGACCATCCCCATCAATG-TCTGCTTCCCTGATCA-TCTCATCGACCTCTTCATCTGTTAACTTCTCTCCAAGGTTTGTCATCACATGGCGAAGCT-CTGCTGCACTAATATAGCC-ATT----------------------------------------------------------------------------------------TTCATCCTTATCAAACACACGGAATGCTTCTCTAATTTCT-TCTTCACTGTC--TGTCTTT--------CATTGTTCTTGCCATCATTGTCATAAATTCAGG-GAAATCAATTGTGCCATTAC s rn3.chr15 64178041 244 + 109774626 TCTTCGTAGTTTACCTGACCATCCCCATCGATG-TCTGCTTCCCTGATCA-TTTCATCAACCTCTTCATCAGTTAACTTCTCTCCAAGGTTTGTCGTCACGTGGCGAAGCT-CTGCTGCACTGATGTAGCC-ATT----------------------------------------------------------------------------------------GCCATCCTTATCAAACACATGGAACGCTTCTCTAATTTCT-TCTTCATTGTCTGTGTCTTT--------CATTTTTCTTGCCATCATTGTCAGGAATTCAGG-GAAGTCGATTGTGCCATTAC s canFam1.chr9 26005255 244 + 53642819 TCTTCATAGTTTACTTGACCATCACCATCAATA-TCTGGTTCCCTGATCA-TTTCATCAACCTCTTCATCTGTTAACTTCTCTCCCAGGTTTGTCATCACATGGCGAAGCT-CTGCTGCACTAATATAGCC-ATT----------------------------------------------------------------------------------------GCCATCCTTATCAAACACACGGAATGCTTCTCTAATTTCT-TCTTCACTGTCTGTGTCTTT--------CATTTTTCTTGCCATCATTGTCAGAAATTCCGG-GAAGTCAATTGTGCCATTTC s danRer1.chrNA 276838070 329 - 390413307 --TTCGTAGTTAACCTGTCCGTCTCCATCAATG-TCTGCTTCTCGAATCA-TCTCATCAACTTCTTCATCAGTCAACTTCTCTCCAAGGTTTGTCATGACGTGGCGCAATT-CCGCTGCGCTGATGTATCC-ATTCCCATCCTTCAGCATAATACCGATGTCAGTTACAACAAGACTGTGTGCCACTAGTCTGGTACAATAGTTTTACTCGCAACTGGACAAACTTTACCTTATCAAAGACACGGAATGCTTCTCTGATCTCT-TCCTCGCTGTCCGTGTCTTT--------CATCTTCCTTGCCATCATGGTCAGGAACTCTGG-GAAGTCTATCGTGCCGTTT- a score=31540.0 s hg17.chr17_random 290813 59 + 2618010 TATCACGATTTGCTTTATTAAT-------TTATACTTTGCTTATATGGAATTTTGCCCAGCAGACC s panTro1.chr1 228857650 59 - 229575298 TATCACGATTTGCTTTATTAAT-------TTATACTTTGCTTATATGGAATTTTGCCCAGCAGACC s mm5.chrX 120276462 66 - 160634946 TAGCTGCATCTACTTCATTGATCATGTCCTGCAGCTCTGCTTCTGTGGGGTTCTGCCCCAGGGACC s rn3.chr15 64178285 66 + 109774626 CGTCGGCATCTACTTCATTGATCATGTCCTGCAGCTCTGCTTCTGTGGGGTTCTGCCCCAGAGACC s canFam1.chr9 26005499 66 + 53642819 CATCAGCATCTACTTCATTAATCATGTCCTGTAACTTTGCTTCTGTGGGATTCTGCCCAAGAGACC a score=2274.0 s hg17.chr17_random 290872 8 + 2618010 TNCATTAC s panTro1.chr1 228857709 7 - 229575298 T-CATTAC s mm5.chrX 120276528 7 - 160634946 T-CATCAC s canFam1.chr9 26005565 7 + 53642819 T-CATTAC a score=857.0 s hg17.chr17_random 290880 4 + 2618010 AATT s panTro1.chr1 228857716 4 - 229575298 AGTT s canFam1.chr9 26005572 4 + 53642819 AGTT a score=20133.0 s hg17.chr17_random 290884 244 + 2618010 NTCTAACCTGttttattt-tgttttttttttctgagacagggtctccctctgttgtccaaggctggagtgtagtagtgccatcgcagctgactgcagcctcaaccttccaggctgaagcgatcctncccancctcaaccntcccacgtggctgagactacaggtgcttgccactatgcccaactaacatttggaattttcgtaTACGTGGATTCCAGAGGGGTGACAGCGAAACGTGAGTAAGCA s panTro1.chr1 228857720 241 - 229575298 -TCTAACCTGttttatttatttattttttttctgagacagggtctccctctgttgtccaaggctggagtgtagtagcgctatcgcagctgactgcagcctcaaccttccaggctgaagcgatcctccc--acctcaacc-tcccacgtggctgagactacaggtgcttgccactatgcccaactaatatttggaattttcgtatacgtggattccagaggggtgacagcgaaacgtcagtaagca a score=10711.0 s hg17.chr17_random 291140 115 + 2618010 tgtagtcccagctacttgggaggctgaggtgggaggatcacttgagcccagggaggctgaggctgcagtgagtcatgatcaggcctctgcactccagcctgggtggcagagtggg s panTro1.chr1 228858293 115 - 229575298 tgtagtcccagctacttgggaggctgaggtgggaggatcacttgagcccagggaggctgagactgcagtgagtcatgatcaggcctctgcactccagcctgggtgacagagtgag a score=4650.0 s hg17.chr17_random 291282 69 + 2618010 CNACAA----GCAGCAGC-AACATCAACTGACCTTT--TACCAGGTGCCTATTGATACCATAGTTTAATTTCTTAT s panTro1.chr1 208237895 76 + 229575298 caacaaaaaaGTAGCAGCTAACATCAACTGACCTTTCATACCAGGTGCCTATTGATATCATAGTTTAATTTCTTAT a score=12247.0 s hg17.chr17_random 291351 135 + 2618010 AACTGTTTCTTATTTCACTTACCAACTCTGTCTTCAGTTACTCCCAGATTTTTACTGTGTGTGTACAGATGACCTTTTGCTTAGATTGAATTGTCTCCCCAGAAGTAAGATTACTGTGAGTCATGGTGAATGGAC s panTro1.chrUn_random 111384901 135 + 240967748 AACTGTTTCTTATTTCACTTACCAACTCTGTCTTCAGTTACTCCCAGATTTCTACTGTGTGTGTACAGATGATCTTTTGTTTGGATTGAATTGTCTCCCCAGAAGTAAGATTACTGTGAGTCATGGTGAATGGAC a score=77636.0 s hg17.chr17_random 291610 887 + 2618010 AACATCAACTGACCTTTTACCAGGTGCCTATTGATACCATAGTTTAATTTCTTATAACTGTTTCTTATTTCACTTACCAACTCTGTCTTCAGTTACTCCCAGATTTTTACTGTGTGTGTACAGATGACCTTTTGCTTAGATTGAATTGTCTCCCCAGAAGTAAGATTACTGTGAGTCATGGTGAATGGACATTCTCCTTACCCTTGATGTAAATTGACAGGGTTTTGggtgcctcccagctataatcttagcactttgggaggctaagagaggaggattgcttgaggccaagagttggaggaggcagtatggcagtatggtgagaccctgtctccattattttaaaaaattgacaggctttacccgggaaggcttatacacaatttaaccacccctcatagtataagaaagtgcccatttcactgcacctttgccagcacagggtattatAATTTCGTAAGCCATTTTTTGTTTGATTATTTTAAATAGACAAAAGACCTCATATTACTTTACTTGTCACATTTCAACATCTTTCCTCAGCTTATTAGCTCTATTTCTTTTCTGTCTGTAAATGGTTGTTGTGGttttgttctttgagacagggtcttgctctgtcatccggctggactgtagtggcataatcatgcctcactgcagccttgacctcccaggctcaaacttcagcattccgagtagctgggactacaagtgtgcagcaccacccccagctaacttttttctccttttggatagagacagggtctcactgtgtcgtccagagcggtctctagctcctggccttaagcagtcctcctgcattagcttctgtaatggctggaatttcaggcatgagccaccatgcctggccTGGgctagtcccnantann s panTro1.chr1 228858441 883 - 229575298 AACATCAACTGACCTTTTACCAGGTGCCTACTGATACCATAGTTTAATTTCTTAGAACTGTTTCTTATTTCACTTAGCAACTCTGTCTTCAGTTACTCCCAGATTTTTACTGTGTGTGTCCAGATGATCTTTTGTTTGGATTGAATTGTCTCCCCAGAAGTAAGATTACTGTGAGTCATGGTGAATGGACATTCTCATTACCTTTGATGTAAATTGACAGGGTTTTGggtgcctcccaggtataatcttagcactttgggaggctaagagaggaggattgcttgaggccaagagttggaggaggcagtatggcagtatggtgagaccctgtctcAATTATTTTAAAAAATTGACAGGCTTTACCCTGgaaggcttatacacaatttaaacacccctcatagtataagaaagtgcccatttcactgcacctttgccagcacagggtattatAATTTAGTAAGTCATTTTTTGTTTGATTATTTTAAATAGACAAAAGACCTCATGTTACTCTACTTGTCACATTTCAACGTCTTTCCTCAGCTTATTAGCTCTATTTCTTTTCTGTCTGTAAATGGTTGTTGTTGttttgttctttgagacagggtcttgctctgtcaccaggctggactgtagcggcataatcatgcctcactgcagccttgacctcccaggctcaaacttcagcattccgagtagctgggactacaagtgtgcaccaccactcccagctaacttttttcttcttttggatagagacagggtctcactgtgttgtccagaccggtctctagctcctggccttaagcaatcctcctgcattagcttctcaaatggctggaatttcaggcacgagccaccatgcctggccTGGgctagtccc----ata a score=23211.0 s hg17.chr17_random 292497 188 + 2618010 ttctctagagttctctttactctgtgctagccaatctctcattatgctgttcacctgttataatgaataattctctgtattaaattttaccactttaaacttttgagtggtttatgcttcctgattggactctgacNAN---------NNNNTNNGNANGGNNCCNNGNNGNNAANCCNNNNNNNNNGGNNTTNGGN s panTro1.chr1 228859324 188 - 229575298 ttctctagagttctctttactttgtgctagccaatctctcattatgctgttcacctgttataatgaataattctccatattaaattttaccactttaaacttttgagtggtttatgcttcctgattggactctgacTAA---------TATGTTAGGAAGGGTCCCAGGAGGTAAACCCACACAGATGGGATTTGGG s canFam1.chr6 3363250 178 + 79106041 ttctttaatgttctttttactttttactagccagtctttcattattatgatcttctgttac----aataattctttatattaaactttacc-tgttcaacttctgtgtggtttatgtgtcctgattagaccctgacaAAGGCAGAACTGATATCAGGATAGACCC--------------ACAAAGATGGGATTTGGT a score=-1254.0 s hg17.chr17_random 292685 46 + 2618010 NNNNGNNNNGNTTNCCNNGGGGNNNNNNNNNNNNNNTTNNCNAGTG s panTro1.chr1 228859512 46 - 229575298 CATAGGTTTGGTTTCCCAGGGGGCAGTGCTGAGCTCTTTGCCAGTG a score=26169.0 s hg17.chr17_random 292731 135 + 2618010 GGAAATGGGGTGCTGGTGATTT---CCAGTAGGTGACCTCACAGTGACTCAAGCTACCACTTACTGTTGATTGTGACGAAATGCCAGCTGAGGCACATGCCTTGGGAGCTANGNGGTTGCTGCCCTTGACCACTGTGA s panTro1.chr1 228859558 135 - 229575298 GGAAATGGGATGCTGGTGATTT---CCAGTAGGTGACCTCACAGTGACTCAAGCTACCTCTTACTGTTGATTGTGATGAAATGCCAGCTGAGGCACATGCCTTGGGAGCTAAGTGGTTGCTGCCCTTGACCACTGTGA s canFam1.chr6 3363480 138 + 79106041 GAAAATAGGATGTGGGTAATTTATGACATGAAGTGACATCACAATTAATCAAGCTATTATTTGTTGTTTATTGTGATGAAATGCCAACTGAAACACATGCCTTGGAGGCTGAGTGGCTGCTGCACTTGACGTTTATGA a score=2159.0 s hg17.chr17_random 292866 32 + 2618010 AGACTGGTGTGGGAAGAATGGCTTTGGATGCA s panTro1.chr1 228859693 32 - 229575298 AGACTGTTTTGGGAAGGGTCGCTTTGGATGCA a score=7194.0 s hg17.chr17_random 292998 84 + 2618010 CAATCCACAGTTACTCATTTGGTCCTTCATGCCTCAAAAAATATTCGGTCTTTTTGAATATCTCATTAAATGTCAAAAGACTGG s panTro1.chr9 87463616 84 - 136640551 CAATCCACAGTTACTCGTTTGGTCCTTCATGCCTCAAAAAATGTTCAGTCTTTTTTAATACCTCATTAAATGTCAAAAGACTGG a score=151.0 s hg17.chr17_random 293653 7 + 2618010 CCNTNAC s panTro1.chr9_random 17349714 7 - 43970871 CCCTTAT a score=48650.0 s hg17.chr17_random 293660 409 + 2618010 TCTGTTCTGCAGACtttttta----tttttcatatatttataattaaataGCAATTTCCAAGCTCAT-GACTGTTACATTAATAACGGTAGTCATTG-TAGATGTTTCATGATTACAGTGAG---TAAATAATGACTACAAGTTTCTCTTTCAATATG------TGCCTAATTAAGTTTCAAGACATCATTGGAGAGAAGgcatagcat-gtggtgaat-aatgtggacaccagagccacactgcctctgcttcaacccctgcttcaccacttactat----gtgtctttgggccacttactaagcctctctgtgcctcactttgat--------------------------ttaaaacctcttagggttgtcttatcacaacaaagtaaagtgcctagaacactgg-ctggcatctggtaaaggctcaataagtgatggctattactCATGTTCC s panTro1.chr9_random 17349721 394 - 43970871 TCTATTCTGCTGACtttttta----tttttcatatatttataattaaataGCAATTTCAAAGCTCAA-GACTGTTACATGAATAACTGTAGTCAGTGGTAGATGTTTCATGATTAGTGTGAG---TAAATAATGACTACAGATTTTTCATTCAATATGCATATTT------TTGAGATTCAAGACATCCATGGAGAGAAagcgtagcat-gtggtgaat-aacgtcgacattggagccacagtgactcagctataaccccgg-ttcaccacttactgt----gtgactttgggccacttaccaaaactctctatgcctcactatgat--------------------------ttaagacctcttaaggttgttttattacaacaaagtaaagtgcctagaacaatgggctggcacctcataagggctcagta----------------catgttAC s canFam1.chr18 51433581 440 + 66173745 TCTATTCTGCTGACATTTTTCTCtttttttcatatttttataattaaataaaaatttCCAAGCTTAACCACTATTCCCTGAAAAATGCTAGCCAGTGGTAAATGGGATTTGATCATGGTAAAGGCCAAATAATGACTACAAGTTTCTCATTCAGTGTACCCA--T------TTAAGACCCAAAACATCCTTGGAGAGa--gcataacatggtagtgaataaaagtggactctggagctggactgtctgtgttggaatcccagctccaacacttaccatttagatgaccttgggcaactt----aaactctctgggactcagtttcatgaattttggaatgaggataataatagtttctacctcctaagcctgttgtttgattaataaataaagcacctagaata-tgc-ctggcactaggtaaaagctcaacaaattacag-tattattAATGTTCT a score=18192.0 s hg17.chr17_random 294069 92 + 2618010 TGAAAGCTTCACTGTGAACATTGGATCAGAACGAATCATCTGGATCTTTGCTAATTTGAAAAGACTAATAGACATAGTCCTGGGAAAAGAAA s panTro1.chr9_random 23344133 92 - 43970871 TGAATGCTTCACTGTGAACATTGGATCAGAACGAATCATCTGGATCTTTGTTAATTTGAAAAGATTAATAGACATAGTCCTGGGAAAAGAAA s canFam1.chr18 51434021 91 + 66173745 TGAATGTTTCACTGTTAA-ATTGCATCAGAACAAATCATCTGGATCTTTGTCATTTTGACAAGAATTATAGATAAAGTTCTGGATAAAAGTA a score=91.0 s hg17.chr17_random 294161 1 + 2618010 A s panTro1.chr9_random 23344225 1 - 43970871 A a score=151376.0 s hg17.chr17_random 294162 1121 + 2618010 AAAATACACCTATAATTCAGGAATGGCTTTTGGGGAAGACAATATATGTCTTAGTAACTACCTGTTTAATTATGTATGAGTACTTAT-TTTATCTGTGATGGAATGTATCTTGAAAAGAT-CAGGAAGAATTATAGTGAAAAAGTTGGACCCCTCATCAGAGGTAGAGCGAAATGGTAGAAAATGGAAGAAAA-AGGAGTCAAGTCAAGAAACACAGTAATTA----CAATAAGTTAATATACACAGGTAATAAGAAGATTAAGATTAATGTGATAAT----TGACGCAATTATTCTCCTAAAAATC---TTNCNATAAAGAT---TTTTAGTGAGGAAATACTNGNAGCACAACCTCCTGTTTGTC--CCTGGGGTGACTCAAGAGGCTTCTTGGGGTAGC--------CAAACACAGACCAAATTCTAGTGAATAAAAAAAAGAAAAAGAAAGAAAACTCNGAAGAAAAACAGAACACACTGATTTCTCAAAGTCTCTAGGTCAGATAGATAAGGACAAATTTAAATTACAGAGAACAATGGGACAAGTAGAAATACAAACCCAAACTTCC-TGATTACTCACTGATGAGGAAAATGGCAAAATTACTAAACCTCAAG-TGTAGACAAGATGATTCCATTTGCATAGATCTGGCAGTGGAAGAGGATGTGGACAGAGAGAGTTTGAGCTGTCTCTAGAAGCCAGA-GTGATGAACATTCCACATGTCTAATTCACATTACCTCTTTCAGTTGATTCCAGAGTTCTGTCACTGTTGAAGCTGTAGACTGATAGAGACATATCTGCTGAAGAACAAAAGGGAATAATATAGCCTATAGCCAATTCTGTTATTTTTCCACACCTTACTTCCTGCAAGGTTTACTGTCTTTTCCCTCTTCCATCTTCAAAACTAGACTTCAACAACAGGATAATTCTATTTGGCAATTTAAATGTCTACTTGTAAAAACATAAGGTATGTAACCTATCCTCTATAGTTTAAGTAATTAAATATGGAAT-ACTTTAGAAACTGAAAGACAGCATTACTAGGCTTT--CAATGGAAACC-----GTTAACATATTTCTAGAAAAAATGATTTAACAGTGTTTCCTAAGAACATGCCAGTTTTAAAAGATAAAATTCCATAACAA-AAAACTTCT s panTro1.chr9_random 23344226 1118 - 43970871 GAAG-ACACCTATAATTCAGGAAAGGCTTTTGGGGAACACAATATATGTCTTAGTAACTACCTGTTTAATTACGTACGAGTACTTAT-TTTATCTGTGATGGAATGTATCTTGAAAAGAT-CAGGAAGAATTATAGTGAAAAAGTTGGACACCTCATCAGAGGTAGAGCTAAATGGTAGAAAATGGAAGAAAA-AGGAGTCAAGTCAGGAAACACAGTAATTA----CAATAAGTTAATATCCACAGGTAATAAGAAGATTAAGATTAATGTGATAAT----TGAAGCAATTTTTCTCCTAAAAATC---TTC--ATAAAGAT---TTTTAGTGAGGAAATACTGGAAGCACAACTTCCTGTTGGTC--CCTGGGGTGACTCAAGAGGCTTCTTGGGGTGGC--------CAAACACAGACCAAATTCTAGTGAATAAAAAAAAGAAAAAGAAAGAAAACTCAGAAGAAAAACAGAACACATTGATTTCTCAAAATCTCTAGGTCAGATAGATAAGGACAAATTTAAATTACAGAGAACAATGGGACAAGTAGAAATACAAACCCAAACTTCCCTGATTACTCACTGATGAGGAAAATGGCAAAATTGCTAAACCTCAAAATTTAGACAAGATGATTCCATTTACATAGATCTGGCAGTGGAAGAGGATGTATACAGAGAGAGTTTGAGCTGTCTCTAGAAGCCAGAAGTGATGAACATTCCACATGTCTCATTCACATTACCTCTTTCAGCTGATTCCAGAGTTCTGTCACTGTTGAAGCTGTAGACTTATAGAGACATATCTGCTGAAGAACAAAAGGGAATAATATAGCCTATAGCCAATTCTGTTATTTTTCCACACCTTACTTCCTGCAAGGTTTACTGTCTTTTCCCTCTTCCATCTTCAAAACTAGACTTCAACA---GGATAATTCTATTTGGCAATTTAAATGTCTACTTGTAAAAACATAAGGTATGTAACCTATCCTCTATAGTTTAAGTAATTAAATGTGGAAT-ACTTTAGAAACTGAAAGACAGCATTACTAGGCTAT--CAATGTAAACC-----ATTAACATATTTCTAGAAAAAATGATTTAACAGTGTTTCCTAAGAACATGCCAGTTTTAAAAGATAAAATTCCATAACAA-AAAACTTCT s canFam1.chr18 51434308 1034 + 66173745 ATATTGCACCTATAACTCATGAACCCCTTTTTGTGCATAGAATA-AGGTTGTA-----TGCCTATTTTATTACATATGAGTAGTAATATTTACCTATGAGGAAATGTATCTTGTCGAGATGCAAGCAG------------AAAGCTGG----------------GGGGGGGACAGGTAGAAAATGAAAGAAAAGAAGTATCAAATCAGGAA--GGAGAAATTATGTTTAAGAAATGAATATTCACAGGTAAAAAA------AATATTAATGTGATAATTAAGTGATGTTAGTTTTCTTTGAAAAATCATATTC--AGAAAGGTCTCCTTTAGTGAGAGAGAGCTAGAAGCCAAA--TCCTGTGAGCCTTCCAGTGGTCACTGAGGAGGCATTTGAGGAAATCATAACAAGTAAACACAGAGCACATCTCAGT----------------AAAAAAGAAAATTCAAAAAGAATA---AAAGCCCTGATTCCTCAGAAACCCTACATCTAACA-CTAAGGACAAAATTAAATG--AGAAAAGACTTGTCCAGCTACAGATACAAACCCAAACTTTT-GGGTTATTCAGTGTTCAGGAGAATTACAGAATTACTAAGTCCCAAA-TATAGACAAGTTGATTCCATTCCCATAGTTTTTGCAGGGGGTGAGGATAAGTGCAGA---AGACTGAGGTTTCCTTAGAAGCCAGGTATGATCAATAGTCCACATGCCTCATTCACATGA-CTACTCCATTTGGTTCAGGAGTTCTATCACTGTTGAAGCTCTAGATTGACAAAGCCATACCAGTTGAAGAACATAAGGATATAAGGCAGTCTATATCCAGT--TATTATTTTTTAAT-CCTTACTTTCTGAAGGAAAGAGTATCTTATCAATCCT--------AGTGTTGGATTTTACTA---GGATAAATCTATT----AGTTAAATTATTCACATGTAGAA--ATTAAGTATACAAACTATTCTCCACAGTTTAAGTCATCAAAGATTTTATAACTATAAAAACTGAGAG--CATGTTACAAGGCTTTAATAACTGAAACCACTAAGTTAACATGGCTCta-------------------ttttattaaaaaaat-----------aaattaaGATCCCACAGTAACAAAAATACT a score=6316.0 s hg17.chr17_random 295283 92 + 2618010 ATAATATTACATTTCACAGTCACAGTTATATAAATCTATTTAAATGACAGTAGACTAAGTACTTTCCTCAGCAT--ATTTATCTACTAGTATGA---------- s panTro1.chr9_random 23345344 92 - 43970871 ATAATATTACATTTCACAGTCACAGTTATATAAATCTATTTAAATGACAGTATACTAAGTACTTTCCTCAGCAT--ATTTATCTACTAGTATGA---------- s mm5.chr2 89356100 80 + 181686250 ATACAATTATAATTTAAAGTAATAATTGTATGAATCTTGGTCATTGCAAA-----TAATTACTTTT-------T--ATGTGTGTGAGAAAAACT---------- s canFam1.chr18 51435342 89 + 66173745 ACAGTACTA-----TACAATTACAGTTTTAT--ATCT---TAGTGGCCAA-----AATTTACCCCCCTTAGCATGAGTTTTTTCAGAAATATGCACAAACACGG a score=49679.0 s hg17.chr17_random 295375 253 + 2618010 TTGCTGGGATAATTTTTAGATTCATAAGTAAAAACCCATATTATGCTTCCAGAACATAACAGGCATTGGTTCCTTCACAATCAAACACGTTTGACATGATCTGCAATTTTAAACTCCATAATCAAAAATAN-TTGAGTAATTGTTCACCTTTATTAATACGGTAT------------------------------ATAAA-------ATATTCCATAACCTAAGATTATGATTATAAATTTATTGGTTTATTATACA-TGTAATATGG------------------------------------------------------------------------------AACATGTTTTT--------------------CTTCCTATTTGGC s panTro1.chr9_random 23345436 253 - 43970871 TTGCTGGGATAATTTTGAGATTCATAAGTAAAAACCCATATTATGCTTCCAGAATATAACAGGCATTGGTTCCTTCACACTCAAACACGTTTGACATGGTCTGCAATTTTAAACTCCATAATCAAATATAT-TTGAGTAATTGTTCACCTTTATTAATATGGTAT------------------------------ATAAA-------ATATTCCATAACCTAAGATTATGATTATAAATTTATTGGTTTATTATACA-TGTAATATGG------------------------------------------------------------------------------AACATGTTTTT--------------------CTTCTTATTTGGC s mm5.chr2 89356180 237 + 181686250 TTGCTTGGATTATTTTAAGGTTCACTAATAAAAGTCCATAATATGTTTCCCAAACACAATTTATATTTATTTCACTATATGCTAGCATATTCAATA-----------ATAAAAATACATTAACTAATACACACAAAATAATTGTATTTTCTTGTTATAATCATATAA----------------------------ATAAC-------AGAAATCATGA-ATGAAATGATAAATGAAATTTTAT---ATTGTTATACA-TGTAAT----------------------------------------------------------------------------------AACACATATTA--------------------TTTTTTATTTGAC s rn3.chr3 73718194 262 + 170969371 TTCCTTGGGTCATTTTAAGGTTCACAAATAAAAGTACATACCAAGTTTCCCAAACACAGTTTACATTTATTTCCCTACATTCTAGCTCATTCTATA-----------ATAAAAGTACATTAACTAATACACACGAGATAATTGCATTTTCTTGTTATAAACATATAAAATACAATAATCATAAATGAGGTGATAAATGAC-------AATAACCATAA-ATGAGAGGATAAATGAAATTT------TCTGTTATACA-TATAAT----------------------------------------------------------------------------------AACATATATTA--------------------CTTATTATTTGAC s canFam1.chr18 51435431 360 + 66173745 TTTCTATGATAATTTTAAGATTCACACATAACAGCCTACATCAAGCTTCCAAAACAAAATAGGCTTTTATTCTTTTATATTCTAACAGACTTGATATGATATGTGATTTTAAATTTTCTAATTTAATGTCT-AACAGTAATTATAAA-----ATTGGCATAATATAAATACTAT---------------------GTAACTGTAGTAATAGCCCATGAGCCAAGGT--TGCTTATCAATCCATTAGTTCATTTTAAACTAAAATAAagtctgcttgaggttctctgcctctactcttccccctgcttacacactctcctgttttctctctctctcaataaataaacaaaaccttttaaaaaGCATTTAATATTCCCCTTTGTTATTTGC- a score=41858.0 s hg17.chr17_random 295628 399 + 2618010 AGAATGGAAAAAGAAAACCAATTTGGCTGT-ATATTAAAACCAAATATACATTATATATTCTGATAAATTTCCATGTTTGT--TGGCTTAA-----TTTTCCCAATT-AGAATTTATCCAATGAAGTCATGTGGTATTTATGACATTACCTGTACTTCAACATATCACAGAAATTTGCAATGAATATCTCTTGTCAATGGTTTCAAATACTCACATTTTGG--------TCCAG-----AAAAGCAATGTTTCTTTCATTGAGGGTTACTGTAGATACCTAATGCATCTATGTGTGATCATAAAACACATGAGTATAAATGGCTGATCCATGGATATAGAATTAGTTCCTAGTGGCTACAG-----TTTCCACAG--TTCCACACAGGCCTCTCATTATCTCAGTCTTT-AGAGGAGTATAGCACTATC s panTro1.chr9_random 23345689 402 - 43970871 AGAATGGAAAAAGACAACCAATTTGGCTGT-ATATTAAAACCAAATATACATTGTATATTCTGATAAATTTCCATGTTTGT--TGGCTTAA-----TTTTCCCAATT-AGAATTTATCCAATGAAATCATGTGGTATTTATGACATTACCTGTACTTCAACATATCACAGAAATTTTCAATGAATATCTCTTGTCAATGGTTTCAAATACTCACATTTTGG--------TCCAG-----AAAAGCAATGCTTCTTTCATTGAGGGTTACTGTAGATACCTCATGCATCTATGTGTGATCATAAAACACATGAGTATAAATGGCTGATCCATGGATACAGAATTAGATCCTA----CTAGAGTCGACTTTCCACAGCATTCCACACAGGCCTCTCATTATCTCAGTCTTT-AGAGGAGCATAGCACTATC s rn3.chr3 73718456 294 + 170969371 --TGTGAAAATTAAACAATAATTATATTGTAACATGGATAC--AATGTAAGATGCACATGCCAGTTAATGT-----TTTGTAATACCTTAAGACTTTTTTTTTAATTCAGAAATTG-CCAATGAG----------------------ACTTGTAAGCCAAC----------TAGTTCTGTTCAGTATC-ATTATGAATAGTTTATTATCCCCAGACTTTTG--------TTT------------CAATACTT---------------------GATATCC--TGAGTTCGACTTTGATCAAGAAAT-CATTTTTATCTATAG-------------AAAGGATGAATTC------------------GTTATACAG--ACCTATAAAAAC--------------ATTTAT-GGACAAATATAAAACCCCT s canFam1.chr18 51435791 399 + 66173745 AAAATGGACAATAAACAT--GTCAGGCTATAATACTGAAACCAAACATATTTTATATACACTGGCTAGATT-CATTTTTGC--CAGCTTAA-----TTC---------AGACCTCTTCCAATGAAAATATATCATATTTAAG-CATTAGCTATATTTAAATAAATAACATGAATTTTTACTGAATATGCCTTG---GTTGTTTTAAAGACTTACTTCTTGGGTCTTTTCTCTGGACGTTAAAAATAGTGCTTCTACCACTGTGGATAGCAATAGATACTTCACATAACTATGTGTTGCAACAGAACATATAATAATGTGTGGCTGATCAGTCCACCTAGAAATAGTTCCAAATGGTCACAC-----TTTCCACAT--TTCCATGCAGGCTCCCCATCATCTCAGTCTTTCAGATGAGTGTAGAACTATC a score=1697.0 s hg17.chr17_random 296027 13 + 2618010 CAAAGCAGATGAC s panTro1.chr9_random 23346091 13 - 43970871 CAAAGCAGATGAC s canFam1.chr18 51436190 12 + 66173745 -CATGTGGATGCC a score=833.0 s hg17.chr17_random 296027 26 + 2618010 CAAAGCAGATGACCAAAATATTAAAA s canFam1.chr18 51436190 25 + 66173745 -CATGTGGATGCCTAAAATACAAAGA a score=3887.0 s hg17.chr17_random 296040 13 + 2618010 CAAAATATTAAAA s panTro1.chr9_random 23346104 13 - 43970871 CAAAATATTAAAA s mm5.chr2 89303041 13 + 181686250 CATAATATAAAAT s canFam1.chr18 51436202 13 + 66173745 TAAAATACAAAGA a score=98520.0 s hg17.chr17_random 296053 723 + 2618010 TGCTTAAACATAATGTCAAATTTTATTCTACAAATGTAGTTGAATGCTCTTACCTGCTG------AAAAATTTCTTCA-TAAAAAACAAAGATCCT-AAATTTGCATGACTATATACAAATTGACATACTTAGTAGAAATTAAC--------AAAGATGAGTCCAT--------TATTATTTAGTGGCAAAAGTA-----TCAACACTACAATTT--------------------GTTACTTGAAAG-------------------TTTTCT-------TAATTA----TGGTGAAGCAACCAGAAGC-ACTTTACT---ATGATTGAGGATTTGTGATA---ACATTCAGGG--T-------CCAGCTACTAACCTTTGTACCTATCAAGAAAAATGCTGAGATTCAACTTCATGGAAAAACAAATGACAGA-GCCTTCCCATAGGCAGAAGCCAAACATTTCAATCTTTCAGTCATTCAACTAGCATATCCCTAAGATCACTTCTTTCCTAAGTGAAACCA-TGTCTCTTCATCTCCCCAATCTCATCCCAGGAAGTTGAGAACTTTCACACATTTTTACAAGCAATNGGTGGGTATGACAAAAAAAAAAAATTACACCTAGAGGACTAGATACCAACTGAAGACATACGCTATCTGGAGCAAAAAAATCACTTTTTCAATATCTTCAGGGATATT-CTAGCAGG--TAAATAATTCATCCATTTATGTGTGTAGACACAGTCTATGACTTT-TACATCAACAATATTTTAA-------ATGGAAGGGACTGTAAGGTCATTATAGATTTGTTAATTAGAATATTTGGA s panTro1.chr9_random 23346117 717 - 43970871 TGCTTAAACATAATGTCAAATTTTATTCTACAAATGTAGTTGAATGCTCTTACCTGCTG------AAAAATTTCTTCA-TAAAAAACAAAGATCCT-AAATTTGCATGACTATATACAAATTGACATACTTAGTAGAAATTAAC--------AAAGATGAGTCC-----------ATTATTTAGTGGCAAAAGTA-----TCAACACTACAATTT--------------------GTTACTTGAAAG-------------------TTTTCT-------CAATTA----TTGTGAAGCAACCAGAAGC-ACTTTACT---ATGATTGAGGATTTGTGATA---ACATTCAGGG--T-------CCAGCTACTAACCTTTGCACCTATCAAGAAAAATGCTGAGATTCAACTTCATGGAAAAACAAATGACAGA-GCCTTCCCATAGGCAGAAGCCAAACTTTTCAATCTTTCAGTCATTCAACTAGCATATCCCTAAGATCACTTCTTTCCTAAGTGAAACCA-TGTCTCTGCATCTCCCCAATCTCATCCCAGGAAGTTGAGAACTTTCACACATTTTTACAAGCAAT-GGTGGGTATGAC--AAAAAAAAAATTACACCTAGAGGACTAGATACCAACTGAAGACATACTCTGTCTGGAGCAAAAAAATCACTTTTTCAATATCTTCAGGGGTATT-CTAGCAGG--TAAATAATTCATCCATTTATGTGTGTAGACACAGTCTATGACTTT-TACATCAACAATATTTTAA-------ATGGAAGGGACAGTAAGGTCATTATAGATTTGTTAATTAGAATATTTGGA s mm5.chr2 89303054 745 + 181686250 CACTTAAA------ATCAACATTTACTATATAACAGTAGGTGAAAATCCTTACCTTCTAGGAAACAAAAGCTTCTT---GGAAAAATAAAGAT-AT-ATATTTTCATTGTTGTGCAAAATTAGATCTGTTAGG--GAAATCAACCTAATCTGGAATATAATTTCATAT---ATCAAATATACAAACTCAAAAT-------TTAGCAACACAATTT---------------------TTCCTTAAAAAAAAAAAAACACACAATTTTTTCTCT-------AAATCATTTCTTGTGAAACAATGAAAACTGACTCTGCT-------CTGAGGACTCCTGATAGACATATTTACAG--TTAACTGCCTAAGTGTCAGTCCCTCTATTTACCAATCCAAACTGTCAAGTT-AATTTCTTAGAA----AGATGATTGC-GGTTTTCCACAAGTATAAGC---AGTTTTCTATTTT----ATTTTCAAGAATCATTTTTTTTTGCTT-CTTCCTTCCTAATTAGAATAACTATTTGCACATCTGTACAATTTCA-CCAAGGAAATTCAAACCTTTTAGAAAATTCTGGGAGCAGT-CATAGATATGAGGAGTCATAGATATGCTAGTCTGAGGAATGTAGTACAACT-AAGGCATCCTCTTGCTTGAACAAATGGA--ATTCTCAAAATGCCCTCA-GGCCATT-CTACCTGA--AGAACAACTCCTTCCTTTATATGTGCAGATACAACTTACAGCTTT-TATGTCATCACTAGTTTAACATTAAGAGACAAGGGACTGCAA--CCATAATAGACTTATTTGTTAGACTATTTGGA s rn3.chr3 73718750 686 + 170969371 TCCTTAACTTCTATTCCAATAGTTACTTTATAAA-GTAACTGAATATTTCTACCCTCTC-----TGACAATATTCTCA-TAAAGAACAATGATGCA-ATGTTAGCAAAAGTCTGTAAAAATAGACCTAATTAA--ACAATTAAT----------TTATAAGCCTGTATTGAGTGGACTATATAATAATTAAATTACACAGTAAACACTACATTTA--------------------GGAAGGTGAA---------------------TTTTCT------------A----CTTTCATTCCATCATGAGA-ACCTTGCT-------GTAAGGGTTGACAGTA---ACATCAATGAACT-------TTAGCTATTGATACTTTACCCTAACAAAAGAAAATCTGAAAAT-AACCACTTTTAA----AACTGACACATGATTTTTCATCAATATGTTCAGATCTCTTCAGTCATTTTCTCATTCCAAAATCCCA--------ATAAAACCTTTTCTACTTAAGACCA-TGACTCCTTTTCTCCATTCTCTCATCTCAACAAGTCAAGATATTCCAAAT-CTTCTCGAAGCAAT-GATGGATGCG----CACAAACCATTGACATTTCAAAGGCTAAATTTGAACT-GAGACATTTCCAGCTTTGACATAACTGA--GTTTTCAGAATCTCTTGA--GACATT-CTAACAAGAAAAAATATTTCACTTAACTTATTAGGTGGCTCCAGACTATCACTTA-GCCA----------------------ATGGAAGGGAAGGATAGGTCAACACAGG-TTAGCAGTTAGAACACTTGAA s canFam1.chr18 51436215 682 + 66173745 CACTTAAA-ACAACACAAATATTAACTGTACAAAGATAGTTGAACATTCTCACTCACTG-----GGAAAATGTCTTCAGAGAAAGACAAAGCTGCTAATGTTGGGAAAACTATGCAAAAATTGGCCTTACTAGTAGAAATTAGC--------TTGATCAAGCCC------------TTATTTA----CCAATATA-----AAAACACTCAAATTTTAAAAAATAACCTTAAATTAGTTACTTGAATGA------------------ATCTCTTATTAGGCAGTTA----TGGTGAGGCAACCAAAAAGTATTTTATTCATATATCTGA---------------ACATTAACA---T-----------------GTCTCTGTGCCTAACAAAACAAATTCTGAAATT-TGCTTCCTGGAA-GACCAATGACTAA-ACTATC---------------------------TATTCAGTTATTCA--TAATGTATCTCTAAGG---CTGCTTCCATAATGGAAAGCA-TTTTTCTACCTTTCCCCAGTTTCATACCAAAGAACTAGGGCCTTCCACATACTTATGAGG------GATATATATGAACAGGAAAGCACA------CCAGAGAAACGTATAGGTGATGAAGAGAAACTCCAGCCTGGGCAGATATTTGAATCCTCAGAAATCTCTTGGGCCATTGTTATCAGG--AAAATAATCTTTCCATTTATATATGCAGACACAGCCTATGGCTTTCCACATCATTACTGTATTCA-------ATGAAAGAGAATGTAAGGACATTACACATTAGTTTATGAGAATATTTGGA a score=91.0 s hg17.chr17_random 296776 1 + 2618010 A s canFam1.chr18 51436897 1 + 66173745 A a score=273.0 s hg17.chr17_random 296776 1 + 2618010 A s panTro1.chr9_random 23346834 1 - 43970871 A s mm5.chr2 89303799 1 + 181686250 A a score=26978.0 s hg17.chr17_random 296777 313 + 2618010 AAtgtaaagcacccaattctgtcactgtttgtggcaccacttgtaacctgctacaatccctggtggactgaacaaagggggtgaaggcgggaataaaag-caaagagacaaagagtatatttggaagaaggggtcgggggcatcttgcctctagtgaaaaagggtcctgagctttacacaaccctccatatttattaggcaaaagagatagcgaggagggcgagtagttgtcagataactgtcagtccaccctttggttcacagcaggcttgcgaggctgtattgcaagaacaattggtgctagatgtctcagG s panTro1.chr9_random 23346835 308 - 43970871 AAtgtaaagcacccaattctgtcac------tgacaccacttgtaacctgctacaatccctggtggactgaacaaagggggagaaggcgggaataaaagacaaagagacaaagagtatatgtggaagaaggggtcgggggcaccttgcctctagtgaaaaagggccctgagctttacacaaccctccatatttattaggcaaaagagatagcgaggagggcgagtagttgtcaggtaactgtcagtccaccctttggttcacagcaggcttgcgaggctgtattccaggaacaattggtgctagatgtctcagg a score=9974.0 s hg17.chr17_random 347518 38 + 2618010 CCTGGAGCTGCTCCAGGGGCCCTGCCTGAGAAATGTTC s panTro1.chrUn_random 4109690 38 + 240967748 CCTGGAGCTGCTCCAGGGGCCCTGCCTGAGAAATGTTC s mm5.chr11 121465959 38 + 121648857 CCTGGAGCTATTCCAGAGGCCCTGCCTGAGAAATGTTT a score=113516.0 s hg17.chr17_random 347556 763 + 2618010 CAGTCCTTGAAATTTCTCCCCAGTTTTAAACATCTGTTGGTGCTTGTGGAAAATAAGGTCGGGATTGCTGTGCTCACCGCCCGTGAAAGCTGCCATTGCACGGT-CTGTAAAGTGCTGGTGATGAACACTTCACACCGACAGGCTGAGCCTCGGCCCTGGCCACGTCGCTGGGGCCCAGCTTCTGATCAGTCTGTATGGTTCAGCTCTCCGTGGAGTTAAGTCATGACAACCAAGGAACACAGGCATTTGAGGGGATAGCTCTGTTCCCTCCGCCATGTCCTGGGGCGAGCTGTGTAGAC-----GTCTGTTATCTTGATAAACCCAAACCTCTTGGGGCCAGGTGCCCTGTGCCT--TCCT--TTGTCCTTCTGTCCACCTGGCCTTCCATGAGCCTCTGGGGTG-------GGGC-TGTCTCCTTTCTC---TCCTGACTTCCCAAAGCACAACTGAAAGCAAACTCTTCCACCCACCATGAGTCTCATTCCATCTCTCCAGTGGGCGAGACACG---TAGTGTTTTGTTTTATTTCATTTGCTTTG--TTTTTTCAATCAAGCTGAGGCCAGCTTGGAGGCCTGTTTCCCTTGGGATGGTGGACACATGGATCTCAGGAGTTTGGGGGTGCCCC-TTCTGGTCGCAAGGGACCTTCTGGACCCTGTGCCTCCCTCCCACCAGCCTCCCCTGACACCGCCTCCGTGCTGCTCCTCTCCCGGTGGGCTCCACCCTCACTAGGGCTTCGAACCTGGAATGCTCTTTCCTGGCCTCCTGCCTGTCCCCTTC s panTro1.chrUn_random 4109728 764 + 240967748 CAGTCCTTGAAATTTCTCCCCAGTTTTAAACATCTGTTGGTGCTTGTGGAAAATAAGGTCGGGATTGTTGTGCTCACCGCCCGTGAAAGCTGCCATTGCACGGT-CTGTAAAGTGCTGGTGATGAACACTTCACACCGACAGGCTGAGCCTCGGCCCTGGCCACGTCGCTGGGGCCCAGCTTCTGATCAGTCTGTATGGTTCAGCTCTCCGTGGAGTTAAGTCATGACAACCAGGGAACACAGGCATTTGAGGGGATAGCTCTGTTCCCTCCTCCATGTCCTGGGGCGAGCTGTGTAGAC-----GTCTGTTATCTTGATAAACCCAAACCTCTTGGGGCCAGGTGCCCTGTGCCT--TCCT--TTGTCCTTCTGTCCACCTGGCCTTCCATGAGCTTCTGGGGTG-------GGGC-TGTCTCCTTTCTC---TCCTGACTTCCCAAAGCACAACTGAAAGCAAACTCTTCCACCCACCATGAGTCTCATTCCATCTCTCCAGTGGGCGAGACACGC--CAGTGTTTTGTTTTATTTCATTTGCTTTG--TTTTTTCAATCAAGCTGAGGCCAGCTTGGAGCCCTGTTTCCCTTGGGATGGGGGACACATGGATCTCTGGAGTTTGGGGGTGCCCC-TTCTGGTCGCAAGGGACCTTCTGGACCCTGTGCCTCCCTCCCACCAGCCTCCCCTGACACGGCCTCCGTGCTGCTCCTCTCCCAGTGGGCTCCACCCTCACTAGGGCTTCGAACCTGGAATGCTCTTTCCTGGCCTCCTGCCTGTCCCCTTC s mm5.chr11 121465997 641 + 121648857 TAGT-CTAGAGATTCCTCCCCAATTTTAAACATCTGTTGGTGCTTGTGGAAAATAAGGTTGGGATTGTTTTGCTCACAGCCC-TGGAAGCT-----------GT-TTGCAAA--GCTGATGATGGATGCTATACA-------------CTTTGGCTCAAGTTAAGCAGCAGGGTCCCACCT----GTTTGTTGGTACAGTTCAGCTGTTCCCAAGATTGTGCAGGG---ACTGAGACACATAGGCATCAATGGG----------------------TTCCCCGAGGTGAGCTGTACTGGCTTTCGGCTTGATACTTCTCTGCACTCAGATTGCTTTCGGTTACATGCTCAGTGCTT--CCCTGCTTCCTCTTCTGTCTACCT--------------TTGTAGAGTGTTAGAGTGAGC-TGCTTCACTTCTTACGTACTGG-TTCCCTGAGCACACATCAAAGCAAACT-------------TAAATCTCACTTCACATCTCCAATAGGCCAGACATAT--AAGTGTAGCATTTTACTTTAT----------TATTTTTAGTCAAGTTGAAGCCAGATTGGAGTCCCATTTTCCCTACGATGATGAAAATATGAAACTCGGGCATTGCAGGTCACCTTACCCTGATCTAGAAAGACCATCTAGATCCCGAGTTGCCTCTGTTCTGGCCTC-------------------CTGCTTTTCTAATGTTAGGGTCCTCTCT---------------------------TTCCCTGGCCTCCT--CAAGCACTCTT s canFam1.chrUn 6371043 602 + 91062872 CGGGCCCTGAGGCTCCGCCCCGACTTCCAACATCTGCTGGTGCTCCTGGAAAATGAGGTCGGGGTTGTTTGGGT--CTGGCCACGCCAGCTGCCACGGGCCAGTGTTTTAACGCGTTGGTGACGGATCCTTCACA--------------CGCGGCCCAGGGC-----GCAGGGCCCC------------------------CGGCCCCCAGAGAGCT-----CCTGACGCCCCGGAGCC-------------------GCTCTCTGCCCTGTCGCAT---CCTTGGTTAGCTGCGTAGGC-----GTCTG---------TGCTCCCCAGTGTCTGAGGCACTGGAGGCCGGAGCCCGGCCCG--TCGTCTGTCCGTCTGCCC-------------------GAGCG-------AGGCGTGGCTTCCGTCGC-----------------------------AGCAGACCCTTCCCCGCACCAAGCGTCTCATGCC---TCTCCAGCGAGCCAGGTATGTCATAGCTTTTTGTTTTA-TTCACTTGTTTGGTTTGTTTTAAATCAAGCTGAGTCCCATTTGCAGCCCCATCTCCCCTGAGGTGGTAGCAGCGTGCGCTGCAGGCGCCGACGGGTGCCGTTTCCTGGTCTTGAGGGAACTT-TGGACCCAGTGTCTCCGCT------GCCCC---------CGTCTCCTCACTGCTCCTCC--------------TCCTCGCTCGAGCCGAGGTGCTGGAGCGCTCGTCCCTGGCATCCTTC----------- a score=2906.0 s hg17.chr17_random 348319 42 + 2618010 CCACCAAGCCC----CCCAGTTCCTGCTGAGTGCCA-CTTCCTGGCT s panTro1.chrUn_random 4110492 42 + 240967748 CCACCAAGCCC----CCCAGTTCCTGCTGAGTGCCA-CTGCCTGGCT s mm5.chr11 121466638 40 + 121648857 CCACCAAAGCTATGGTCCAG-CCTTGCTGATAGAC----TCGTGG-- s rn3.chrX 36371881 43 + 160775580 CCACCAAGCCC----CCATCTTCCTGCTGGCTGCTACCCTCCTGTCT s canFam1.chrUn 6371645 29 + 91062872 CCACTGAGGCT----GC--------GCTGCG------CCTGCTGACC a score=19238.0 s hg17.chr17_random 348361 242 + 2618010 CAGCTGCTCCCATCCAGTGCTGGG--CTCAGCCTCGTCACCCACGCCCCACCATAAAGGGTTCTTTACAGCAGATGGCATCGCCGTCGGCCCCCCAACCNGGAGGCGCCCTTCAGGGCAGGAGCCTGTTTC----TTGTGGAAGTGTCTTAAGCCCTAAAACGGTGCCCAGTGCACAGTTAAATAAAAATCAGAGCCCCAAGAGCAAACCTTAGCCCCTCAC---------GGTGACTACAGCCCTTCCAAAGAGGG s panTro1.chrUn_random 4110534 241 + 240967748 CAGCTGCTGCCACCCAGTGCTGGG--CTCAGCCCCGTCACCCACGCCCCACCATAAAGGGTTCTTTACAGTAGATGGCATCGCCGTCGGCCCCCCAACC-GGAGGCGCCCTTCAGGGCAGGAGCCTGTTTC----TTGTGGAAGTGTCTTAAGCCCTAAAACGGTGCCCAGTGCACAGTTAAATAAGAATCAGAGCCCCAAGAGCAAACCTTAGCCCCTCAC---------GGTGACTATAGCCCTTCCAAAGAGGG s mm5.chr11 121466678 168 + 121648857 ----------------GTGCTGGGTACTGATCTTCATGAGCTGCCCTTCTCTATATATGGCCCCCTA------------------------TCCTGACT--GGGGTGCCCTATGGATC------------------------AGTGCCTTTGCCC----ACTGATGTGCAGTATATGGATGGGGAATAAT---------GAGAATAAGCTTTGGCCCCTTA----------AGTGACTGTAGATCACCTAAAGAAGG s canFam1.chrUn 6371674 226 + 91062872 ---------CCAGGCTGCCCTGGC--CGGAGC-TCGGCAGGAGCGT----CTGTGAACGGCCTCTTG-----------ATCGTGGCATTTCTCCCTGCTGGAAGGTGTCCTTCTGGACAGGGGTCTGTGTCTGTTTTATGGATTTGTCACAAACCCTAGACAAAT--CCACCTGGCCGTCAGGTAAAAATAAGAAGCCACGTGGCAAATCTTGGCTCCTCCCTGACCACTGGGTTACAGCATTATacacacacac-- a score=6334.0 s hg17.chr17_random 348603 44 + 2618010 GCCATAT-CACGTGCACAGTGACCCTCTCCACGTGGGTCCCTTGG s panTro1.chrUn_random 4110775 44 + 240967748 GCCATAT-CACGTGCACAGCGACCCTCTCCACGTGGGACCCTTGG s canFam1.chrUn 6371900 44 + 91062872 -acacacacacacacacacacacGCTATACACGTGGGTCACTTGG a score=1810.0 s hg17.chr17_random 348647 19 + 2618010 TTTGTGAGGGCCTTGGTTT s panTro1.chrUn_random 4110819 19 + 240967748 TTTGTGAGGGCCTTGGTTT a score=2209.0 s hg17.chr17_random 348666 30 + 2618010 GCAGGCCATAGACTGACACAGTGGCACCTG s panTro1.chrUn_random 4112424 30 + 240967748 GCAGGCCATAGACCCACACGGTGGCACATG a score=24009.0 s hg17.chr17_random 348696 218 + 2618010 GTGTGAGGGGAAGAGGGTGTGGAGGCCACAGACCCACACGGTGGTACCTGGTGTGAGGGAAAGAGGGTGTGGGGGCCACAGACCCACACGGTGGTACCTGGTGTGAGGGGAAGAGGGTGTGGAGGCCACAGACCCACACGGTGGCACCTGGTGTGAGGGGAAGAGGGTGTGGAGGCCACAGACCCACACGGTGGCATCTGGTGTGAGGGAAGAGGGTG s panTro1.chrUn_random 4112454 218 + 240967748 GTGTGAGGGGAAGAGGGTGCGCAGGCCATAGACCCACACGGTGGCACATGGTGTGAGGGGAAGAGGGTGCGCAGGCCATAGACCCACACGGTGGCACATGGTGTGAGGGGAAGAGGGTGCGGAGGCCATAGACCCACACGGTGGCATCTCGTGTGAGGGGAAGAGGGTGTGGAGGCCATAGACCCACACGGTGGCACCTGGTGTGAGGGAAGAGGGTG s rn3.chr3 13898878 218 + 170969371 GCGAGTGGGAAACGGGAGACAGAGGCCCCGCCCCTGCAGAGAGCAGCAGTGCATGTGGGAAAGAGGATGCAGAGGCCCCGCCCCTGCAGAGAGCAGCAGTGCGAGTGGGAAACGGGAGACAGAGGCCCCGCCCCTGCAGAGAGCAGCAGTGGGAGTGGGAAAGAGGATGCAGAGGCCCCGCCCCTGCAGAGAGCAGCAGTGCAGTGGGAAAGAGGAGA a score=3099.0 s hg17.chr17_random 348914 19 + 2618010 TGGAGGCCACAGACCCACA s panTro1.chrUn_random 4112672 19 + 240967748 TGGAGGCCATAGACCCACA s rn3.chr3 13899096 19 + 170969371 CAGAGGCCCCGCCCCTGCA s canFam1.chrUn 6372940 19 + 91062872 TGGGAACAGCTGGCTGACA a score=638.0 s hg17.chr17_random 348933 3 + 2618010 CGG s panTro1.chrUn_random 4112691 3 + 240967748 CGG s canFam1.chrUn 6372959 3 + 91062872 TGG a score=17194.0 s hg17.chr17_random 348936 125 + 2618010 TGGCACCTGGTGTG-AGGACCTTCTGAAGGTACCCGTGGGTGAGGGGATCATTTGGATGGATTGCAAAATGGCCATGTGGCTTTAGTGACACCTTTAGGATGTAATAAACTTCAGAGTCAACCTTA s panTro1.chrUn_random 4113194 125 + 240967748 TGGCACCTGGTGTG-AGGACCTTCTGAAGGTACCCGTGGGTGAGGGGATCATTTGGATGGATTGCAAAATGGCCATGTGGCTTTAGTGACACCTTTAGGATGTAGTAAACTTCAGAGTCAACCTTA s canFam1.chrUn 6372962 100 + 91062872 TGGCCCTTGGGGGACGGGGTCTTCTGAGGGTAGCCGTGCGTGGTGGG--------------------------CATATGACATCTGACACATATTTAAGTTATAATAACTTCTAAAGTCAACCTCA a score=328.0 s hg17.chr17_random 349061 7 + 2618010 ATTCTGG s panTro1.chrUn_random 4113319 7 + 240967748 TTCCTGG a score=58752.0 s hg17.chr17_random 349069 727 + 2618010 actttacaacttacacaaataatcactcaaaatcatccttacactaaaaatgcaaaactatacaatttctagaagaaactatagaggaaaagctgtgtgcctttgcgtttggtaatgaattttaacaaatgacacagaaggttgatatacacagaagaaatgacaatgtggatttcttaatatttacagtttatactctggaagagaccttgtcaagagaacaaaaacacaagccacatattgaagaaaatatttgcaaaatacagatctgagaa----tttgtattcaaaatatat--aaaaaattgttaaaactaaacaataagttaaacaacccaattaaaaatgcacacagatctgaacagacacttcaccaaagaagatctacagatggcaagtacacttacaaaaagatgctcaacatactagagaactgaaaaccacaaaaagatagcacagctggtctatatctcttagaactgctaagctctttaacaaatgacaaattgctggaggaaaaacaagaactcttttcattgccagtggaaCACAGTGTATAagaccaaactatgccaccccaaaatataatggtaggaaaccagaatatgcaaccccaaaatatgtccctttggcttaagaattattccaagctaattattttggaaaaaaaaaa----tgctaacaaaggaagttgtgaaaataaagtagaagttac--ttgtgtaa-ggaaaatttacat s panTro1.chrUn_random 4799320 736 + 240967748 actttacaacttacacaaataatcactcaaaatcatccttacactaaaaatgcaaaactgtaccatttctagaagaaactatagaagaaaagctatgtgcctttgggtttggtaatgaattttaacaaatgacacaaaaggttgatatacacagaagaaatgacaatgtggatttcttaatatttaaagtttatactctggaagagaccttgttaagagaacaaaaagacaagccacatattgaagaaaatatttgcaaaatacagatctgagaaagaatttgtattcaaaatatatttaaaaaatc-ttaaaactaaacaataagttaaacaacccaattgaaaatgcacacagatctgaacaga-acctcaccaaagaagatctacagatggcaagtaaacatacaaaaagatgctcaacatactagagaaccaaaaaccacaatgagatagcacagctggtgtatagctcttagaactgctaaactctttacaaaatgacaaattgctggaggaaaaacaagaactctt--cattgccggtggaaCACAGTGTATAagaccaaaatatgccatcctaaaatataatggtaggaaaccagaatatgccaccacaaaatatgtccctttggcttaagaattattccaagctgattattttgaaaaaaaaaaaaaaatgctaacaaaggaagttgtgaaaacagagtagaagttacacttgtgtaacggaaaatttacat a score=44091.0 s hg17.chr17_random 349796 321 + 2618010 ctataaaggaaatcaccatttaaaagctacctctctcaacaccaagaagag-aaggataac--taaatcactgaagagtcttatcaatggagaatgcatggacttaagtctgtataacgaaccttacccttgtctaatgtgcttttgctggttaactccccact---------actgcacctcaaatcttctttctttaag-ttgaagatagtatttatgcttgaattgaaagccacctgttggagatttactcatttttccctgagtatctcccatgtaaccataagatatacatgtttttaaacttttctct--ttttctcattttaatctgtc s panTro1.chrUn_random 4800056 326 + 240967748 ctataaaggaaatcaccatttaaaagctacctctctcgacaacaagaagag-aaggataac--taaatcactaaagagtcttatcaatggagaatgcgtggacttaagtctgtataacaaaccttacccttgtctaatgtgcttttgctggttaactccccact-----caccactgcacctcaaatcttctttctttaagattgaagatagtatttatgcttgaattgaaagccacctgttggagatttactcatttttccctgagtatctcccatgtatccataaggtatacgtgtttttaaacttttctgt--ttttctcattttagtctgtc s canFam1.chr23 46462999 323 - 55586079 ctaaaagcaaaatctct-----aaagatgtctctctcagtaccaggaagagtggggatgactgtaaacctctagaaactgttatctgctgaaaaggc-tggacttaaatctgcataac-aaccttattcttgtttactttgcttttcctgatt--cctcccattactgacctctctgc-cctcaggactttttgtctttag-ctgaaactggtatttaaggtggtggctttggccattt-caggggagttactcagttttcctagttcat-ttccatgtacagaggaggaatgcaagttattaaacttttgtttgattttatcctgtcaatctgtc a score=11661.0 s hg17.chr17_random 350117 151 + 2618010 agtttttacagagcgttccatctaagaattccaaaaaca--gaaaattatttttcctcccctaTTACAagttgggcatttttttccaaagctaaacaagtctcaccttacaatccaaaaataacattcctaggtattttgacaactactttga s panTro1.chrUn_random 4800382 151 + 240967748 agtttttacagagggtcccatctaagaattccaaaaacatagaaaatt-tttttcctcccc-attacaagttgggcagttttttctaaagctaaacaagtctcaccttacaatccaaaaatcacattcctaagtattttgacaactactttga a score=9445.0 s hg17.chr17_random 350268 136 + 2618010 tgttatttcccatcaaaagctaccatgcagttatttacagaagccctattcataatgaccaaaggaaaaaaaaggaatcagaaagtcttacaatagatgactgTGTGGGAATCCACTCAGACATCAAAAGTTGTTA s panTro1.chrUn_random 4800533 136 + 240967748 tgttatttccaaacaaaagctaccatgcaattatttacagaagccctattcataatgaccaaaggaaaaaaaaggaatcagaaagtcttacaatagatgactgTGTGGGACTCCACTCAGACATCAAAAGTTGTTA s canFam1.chr23 46463377 43 - 55586079 ttttactccccaaca---------------------------------------------------------------------------------------------GGATTCACTCAGACCTTCAGAATTAGTA a score=28773.0 s hg17.chr17_random 350404 179 + 2618010 TAAAGATTATTTAAA--TGAAAACATTTGAGAT-ACTGAAGAT----GAAGAAATCTTACCAGAACTTACTTTATCCAATTAAAGCACAGCTCCCAGAAAAATACAGCTGCCATTAAC-CCCATCC-----AAGGAGTTTCTTGCAAATTCAGCTGCCATGAAGACAGCGTACTCTT------TCCCATTAGCATtga s panTro1.chrUn_random 4800669 183 + 240967748 TAAAGATTATTTAAA--TGAAAACACTTGAGAT-ACTGAAGATAAAGGAAGAAATCTTACCAGAACTTACTTTATCCAATTAAAGCAGAACTCCCAGAAAAATACAACTGCCCTTAAC-CCCACCC-----AAGGAGTTTCTTGCAAATTCAGCTGCCATGGAGACAGCATACTCTT------TCCCATTagcaatga s rn3.chr17 70857221 164 - 97307196 TAAATATTATTTTGA--GGTAAACAT-------------AGTT------AGAAATCTTTTCATGACTTACCTTATCTACCTAAAGCAAACCTTCCAAAGCTCTACC-CTGCTCACACCTCCCCTCT-----GAAGAGTTCCCTACAAATAAAG-------GAAGGTGACAGACTGCCTGAAAGTCCCACTGGCATCGA s canFam1.chr23 46463420 181 - 55586079 ACCAGATTATTTTAAAGTGGAAATATTTGAACTAAAAGAAGATGCAGAAAGAAATCTTATGTGAACT----TTCTCTGAGAAAAGTAGAGACTCTGA------ACAGCGGCCATCAAC-CTCCTCCATATGAGGGAGTTTCCTGTTAATTCAACTGTCCTGGAGATAGACTGCCTAT------TTCCATTAGCATCAA a score=438.0 s hg17.chr17_random 350583 4 + 2618010 taaa s panTro1.chrUn_random 4800852 4 + 240967748 taaa s rn3.chr17 70857385 4 - 97307196 GGAA a score=252193.0 s hg17.chr17_random 350587 2969 + 2618010 tgaaaattaaattctaagctcccaactgactgaacagacccactcttggctgaggggaccccagagtaactttcaaaactgagttctcagctttgctaggatgggatgatggggttaagatacacatcgttataccccctcctttgctaaccatgatgaggctttcttccctaaggatttaacagaaaccagccctttcaaagcctccaccactgatatcaacctctcctttcttccctgataagagaccacccacgatggagaggttctggccagcgtacagaggatgcacagagcaagttttcatgtcctctacttcaccttttaatgtcagagggctgaaaactccaccctgggatcatgctaacactgccattttttgtacatgggacccatgaagaagcaagaaactcaattgtgcgtgcatgcatttctccttccataaatattcatgactcctcctagagcttattaaataaatctatttggccattccactcagcataagttgctatttcctttacctcctccttgaagcatctgtttctggcttctggctggaggctatgcttcccagcctgtcagaaggacaaccctgcaggctacaaccctttatagaaaataaatctctcactgggtg-ggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttcagaccagcctggccaacatgatgaaatcctgtctctaccaaaactgcaaaaaa-ttagccaggtgtggtggtgggcatctgtaatcccagctaatcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgaaccaagatcatgccattgcactccagcctgggcaacaagagtgaaactctgtctcaaaaaaaataaaaataag------cataaaaatgaagaaatgtctcctttccaaatttatgaacctcatcattcttccgttcacaGCATTAAAAGGTTCAAAAAGACCTTTCCATACTCTCCCACAGAAGCCCTAGAAATTGTCATTTTGTTCATCATTCTGGATGCCTGAGAACTTGTAATCCAATGAGTAGAAAGTTTGGTACCCCATTTATGGCTGTCAACCTGCCAGTTCTCAGGAGTTTGTATAAAAGCCTAAATCCGAAAGGATCTCATCCCATTAGGACCCTTGTCTCCTTTTCTGTTGCCTTTGCCCACTGGCTCTGGCAACA-GGGgtctttctttctccttggctatctttggatatgggggctccgtcttctgtgccaccttagggaatgccttttgcaggcatggctaagtcattaaaaagcctacagttttagtAACATTTTGAGTGAGCACTCTCTGAAGCTGCGTNGGAATCTcangcttctttgtctggaagataactcttgggctacaagtttcttatcctagctttggttttgaggcctctctgttctcctcttgggttggaagttattcctggctttttgtttcaaggtg--tctgtgatcttgatcttgctgctttcatgggaacttctcacttcactaaattctcccttctcaaacctctgctgactatgtgttccaccaatatggaactaattctacttcttttcctgtttgcatgactttactaagaattatttacaactttaatggctcctttgagaaaatttttatcttccaaattgcctccttttagacctttcctttcccagttgagtctctcaactccctataatcactgaaacttcaggcaccccactccatgccttggaggctctcaatgtgctcaagaatctgcaaaagcaaacacctggggctgaagaataaaatagaaaaaaaattatttctcagcctccataagattctatgtcaaaaaaaaagaaaatctttaaaatctccaaaaatattggtgagaaaaaagccttagccctcatatgaagaaga-aaaaacttgttccattttccagatacatagttataatacaaatataaaatggggcaaagacaaaaaccaagtcttctatataaactagtgaattgtgtagttattgtAATCACattagtcaggggtctccagaaaggcagaatcaataggatatatg----tagacagatgagagaagattcattaggggaactggttcacataattatggaggctgagaagttccacaatagcctgtctccaagttggagaaccaggaaagctggtagcatggctcactccagatacaaaggactcagaatcggggaagccaatggtgtaactctgattgtgaggccaaaggtctgagaccctgaagttctgatgtcaagggcaggagaagaaggatgtttccatttcagaaggagataattcacctttcctcttccttgttattctatctgggctctcaaccaattggatgctgcctgtattcatccatttttatacagctatgaagaaatatctgagtctgagcaatttataaagaacaaaggggtttaatgggctgacagttccacatggctgcaggggcctcacaatcatggcagaaggggaagcaaagctatccctcttcacatggcagcaac---aagaagtgctgagccaaaggggaaaagccccttataaaaccatcagatcatgagaactcactcactgtcatgagaacagcatggcggtaaccaccaccatgattcagtcacctcccattgggtccctcccacgacatgtaggtattacaggaactac-aattcaagatgagatctgggtggggacacagccaaaccatatcagtgcccatccacattgggtcatggttatctcagtgtcttccagaaacaccctcatagatatgcccagaaatcgtgtttgaccagctgtgtgtgtctctcaatccagtcaagtagacgtctacgattaaccatcagaatatttatgcctgattcatggctgaaatcgtgtttgaccag s panTro1.chrUn_random 4800856 2978 + 240967748 tgaaa------tcctaagctcccaactgactgaacagacccactcttggctgaggggagcccagagtaacattcaaaactgagttctcagctttgctaggatgggatgatggaggtcacatacacattgttataccccttcctttgctaaccatgataaggctttcttccctaaggatttaacagaaaccagccctttcaaaggctccaccactgatatcaacctctcctttcttgcctgataagagacaacccacgatggagaggttctggccagtgtacagaggatgcacagagcgagttttcatgtcctctgcttcaccttttattgtcagatggctgaaaactccaccctgggatcatgctaacactgccattttttgtacatgggacccatgaagaagcaacaaacccaactgcacatgcatgcatttctccttccataaaaattcatgactcctcctagagcttattaaataaatgtatttggccattccactcagcataaattactatttcctttaccttctctttgaagcatctgtttctggcttcttgctggaggctatgcttcccagcctgtcaggaggacaacccttcaggc-gcaaccctttataggaaataaatctctcattgggtgtggtggttcaggcctgtaaacccagcactttgggaggccgaggcaggtggatcacctgaggtcaggagtttcagaccagcctggccaacatgatgaaactctgtctctactaaaaatacaaaaaaattagccaggtgtggtggtggacatctgtaatcccagctaatcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgaaccaagatcacgccattgcactccagcctgggcaacaagagtgaaactctgtctcaaaaaaaataaaaataaaaataaacataaaaatgaagaaatgtctcctttccaaatttatgaacctcatcattcttccattgataGCATTAGAAGGTTCAAAAAGACCTTTCCATACTCTCCCACAGAAGCCCTAGAAATTGTCATTTTGTTCATCATTTTGGATGCCTGAGAACTTGTAATCCGATGAGTAGAAATGTTGGTACCCCATTTATGGCTGTCAACCTGCCAGTTCTCAGGAGTTTG--TAAAAGCCTAAATCTGAAAGGATCTCATCCCATTAGGACCCTTGTCTCCTTTTCTGTTGCCTTTGCCCACTGGCTCTGGCAGCAGGGGgtctttctttctccttggctatctttggatatgggggctccgtcttctgtgccaccttaggaaatgccttttgcaggcatggctaagtcattaaaaagccttcagtttcagtAACATTTTGAGTGAGTACTCTCTGAAGTTGGGTTGGAATCTcaggcttctttgtctggaaggtaactcttgggctacaagtttcttatcctagctttggttttgaggcctctctgttctcctcttgagttggaagttattcctggc-ttttgtttcaaggtgtctctgtgatcttgatcttgctgctttcatgggaacttctcagttgactaaattctcccttctcacacctctgctgactatgtgttccaccaatatggaactaattctacttcctttcctgtttacatgattttactaagaattatttagaaatttaattactcctttgagaaaatttttatcttccaaattgcctccttttagacctttcctttcccaGTTGAGTCTCTCAACTCCCTGTAATCACTGAAACTTTAGGCACCCCACTCCATGCCTTGGAGGCTCTCAATGTGCTCAAGAATCTGCAAAAGCAAACACCTGGGGCTGAAAAATAAAATAGAAAaaattttacttctcagcctccataagattgtatgtccaaacaaaagaaaatcttaaaaatctccaaaaatattggtgagaaaaaagctttggccctcatatgaagaagataaaaacctgttccattttccagatacacagttataatacaaatataaaatggggcaaagacaaaaaccaagtcttctatataaactagtgaattttgta-ttattgtAATAACattagtcagggttctccagaaaggcagaatcaataggatatatgtagatagatagatgagagaagactcattaggggaattggttcacataattatggaggctgagaagttacacaatagcctgtctccaagttggagaaccaggaaagttggcagcatggctcactccagatataaaggactcagaatcagggaagccaatggtgtaactctgattctgaggccaaagctctgagaccctgaagttctgatgtcaagggcaggagaaggaggatgtttccatttcagaaggagataattcacctttcctcttccttgttgttctatctgggctctcaaccaattggatggtgcctgtattcatccatttttatacagctgtgaagaaatacctgagtctgagcaatttataaagaacaaagaggtttaatgggctgacagttccacgtggctgcaggggcctcacaatcatggcagaaggggaaacaaagacgtccttcttcacatggcagcaacaagaagaagtgctgagccaaaggggaacagccccttataaaaccatcggatcatgagaactcactcactgccatgagaacagcatggcagtaaccaccaccatgattcaatcacctcccactgggtccctcccacgacatgtacggattataggaactacaaattcaagatgagatctgggtggggacacaggcaaaccatatcagtgcccatccacactgggtcagggttatctcagtgtcttccagaaacaccttcacagatatgcccagaaattgtgtttgaccagctatgtgtgtctctcaatccagtcaagtagatgtctaaaattaaccatcagaatatttatgcctgattcatggctgaaattgtgtttgaccag a score=6681.0 s hg17.chr17_random 353556 80 + 2618010 ctatgtgtgtctctcaatccagtcaagtagacgtctacaattaaccatcaGAATATTTATGTCTGATTCATGGCTgaaat s panTro1.chrUn_random 4803835 80 + 240967748 ctatgtatgtctcttaatccaatcaagtagatgtctaaaattaaccatcaGAAtatttatgcctgattcatggctgaaat a score=60917.0 s hg17.chr17_random 354463 756 + 2618010 gaaatcgtgtttgaccagctatgtgtgtcccttaatccagtcaagttgatgtctaaaattaaccgtcaGAATATTTATGCCTGATTCATGGCTgaaatcgtgtttgaccagctatgtgtgtctctcaatccactcaagtagatgtctaaaattaaccgtcaGAATATTTATGCCTGATTCATGGCTgaaattgt--ttgaccagctatgtgtg-tctctcaatccactcaagtagatgtctaaaattaacca-CAGAATATTTATGCCTGATTCATGGCTgaaatcgtgtttgaccagctatgtgtgtctctcaatccactcaagtagatgtctaaaattaaccgtcaGAATATTTATGCCTGATTCATGGCTgaaattgt--ttgaccagctatgtgtgtctctcaatccactcaagtagatgtctaaaattaacca-CAGAATATTTATGCCTGATTCATGGCTgaaatcgtgtttgaacagctatgtgtgtctctcaatccactcaagtagatgtctaaaattaaccatcaGAATATTTATGCCTGATTCATGGCTgaaatcgtgtttgaccagctatgtgtgtctctcaatccgatcaagtagatgtctaaaattaaccgtcaGAATATTTATGCCTGATTCATGGCTgaaattgtgtttgaccagctatgtgtgtctcttaatccactcaagtagatgtctaaaattaaccatcaGAATATTTATGCCTGATTCATGGCTgaaatcgtgtttgaccag s panTro1.chr14 14167 763 - 97804244 gaaattgtgtttgaccagctatgtgtgtctcttaatccagtcaagtagatgtctaaacttaaccatcagaatatttatgcctgattcatgactgaaatcatgtttgaccagctatgtgtgtcccttaatccagtcaagtagatgcctaaagttaaccatcaGAATATTTATGCCTgatacacggctgaaattgtgtttgaccagctatgtgttctctctcaatccaatcaagtagatgtctaaaattaaccatcaGAATATTTATGCCTGATTCGTGGCTgaaatcgtgtttgaccagctatgtgtgtcccttaatccagtcaagtagatgcctaaagttaaccatcaGAATATTTATGCCTGATTCATGGCTgaaattgtgtttgaccagctatgtgtgtcccttaatccagtcaagtagatgtctagaattaaccatcaGAAGATTTATGCCTGATTCATGGCTgaaatcgtgtttcgccagctatgtgtgtctcttagtccagtcaagtagatgtctaaacttaaccatcaGAATATTTATGCCTGATTCGTGGCTgaaattgtgtttgaccagctatgtgtgtcccttagtccagtcaagtagatgcctaaagttaaccatcaGAATATTTATGCCTGATTCATTGCTgaaatcgtgtttgaccagctatgtgtgtcccttaatccagtcaagtagatgcctaaagttaaccatcagaatatttatgcctgattcatgacagaaatcgtgtttgaccag a score=23603.0 s hg17.chr17_random 355219 271 + 2618010 ctatgtgtgtctctcaatccgatcaagtagatgtctgaaattaaccatcaGAAtatttatgcctgattcatggctgaaatttcaggatgaaagctatgaaatctctatttgtgtttgtgtatctattaatgtatgttatgtatatgtgatattttcttaactccagagagcattgcaaaattcatttatgaaatcctctaaaagtgctctattctaacttggcttggaaaaaaataagcatttataaataaatattcaccaaactcctaga s panTro1.chrUn_random 4803835 271 + 240967748 ctatgtatgtctcttaatccaatcaagtagatgtctaaaattaaccatcaGAAtatttatgcctgattcatggctgaaatttcaggatgaaagctatgaaatctctatttgtgtttgtatatctattaatgtatgttatgtatatgtgatattttcttaactctggatagcactgcaaaattcatttataaaatcctctaaaagtgctctattctaacttggcttggaaaaaaataaccatttataaataaatattcaccacactcctaga a score=10017.0 s hg17.chr17_random 355490 119 + 2618010 aatataggaactgatcaaatgtttcttaagttaacatgatttg--gataaaacttagttaaataagattaatatagtatt-----------------tttggtgtaataaaacaactgtatctt-----caaaattat--------tattg s panTro1.chrUn_random 4804106 119 + 240967748 aatacaggaactgatcaaatgttttttaagttaacatgatttg--gataaaacttagttaaatgagattaatataaaatt-----------------tttggtgtaataaaac---tatgtctt-----caaagttat-----cactattg s canFam1.chr14 31512353 151 - 63549963 AATTGATGAATTCAGGAAATTTTGCTTAAAGTGGAATGGATTGTCTATAAAATTTCTTTTTGTAAGATTAGTATTATATTCCTATAGGGGAAGTTTCTCTAGTGGATTGAATTAAAAGTATTTCAATAGAAAAAGTATGAAGGGATTAATG a score=5800.0 s hg17.chr17_random 355609 66 + 2618010 aatataaaac-aagcataaattcctattctgcttgag-----ttctagtcaaataagctaatattatactta----- s panTro1.chrUn_random 4804225 66 + 240967748 aatataaaac-aaacataaattcctattctgcttgag-----ttctagtcaaataagctaatattatactta----- s mm5.chr6 91254579 68 - 149721531 AATATCAAAC-AAATATAAATT--TATTGTACATATGTAATTTTCTGGTCTGTTAAGTTTGCA-TATACCTA----- s canFam1.chr14 31512504 74 - 63549963 ---ATAATACTATAGGTATGGTGCTTTTTCCTTAAAGCTGTTTTGTAAAAAAATGAGGTGTGACTATATTAAACAAA a score=227.0 s hg17.chr17_random 355675 11 + 2618010 ctagaaacata s panTro1.chrUn_random 4804291 10 + 240967748 c-agaaatgta s canFam1.chr14 31512578 11 - 63549963 CCAAGAGtatt a score=2091.0 s hg17.chr17_random 355686 12 + 2618010 aaatcttaaagc s panTro1.chrUn_random 4804301 12 + 240967748 aaatcttaaagc s canFam1.chr4 18190856 12 - 91326168 AAATCTTTCATC a score=3152.0 s hg17.chr17_random 355698 42 + 2618010 --ttatagatt-tgattctaaTTAAGTTGTCATTCTTATGAAAAA-------- s panTro1.chrUn_random 4804313 42 + 240967748 --ttatagatt-tgattctaaTTAAGTTGTCATTCTTATGAAAAA-------- s rn3.chr14 23002048 36 + 112220682 --TTATATATT---ATTTTATTTAA----TTACCCATGTGTAATA-------- s canFam1.chr4 18190868 53 - 91326168 TGCTTTAGATTTTAATTTCACTTTAGATTTTAACTTTAGATTTTAATCTCAGA a score=191.0 s hg17.chr17_random 355740 2 + 2618010 CA s panTro1.chrUn_random 4804355 2 + 240967748 CA a score=19790.0 s hg17.chr17_random 355742 40 + 2618010 TTATTTTTTTATGCTGAAAAGATACACATATATTTAGAGT-- s panTro1.chrUn_random 4804357 40 + 240967748 TTATTTTTTTATGGTGAAAAGATACACATGTATTTAGAGT-- s mm5.chr14 69012970 37 + 117079080 TTTTTTTTTTATGGTGAAAAAA---GTATATATTTAGAAT-- s rn3.chr14 23002084 40 + 112220682 CTTTTTTTTTATGGTGGAAAACAAAGTATATATTTAGAAT-- s canFam1.chr4 40662375 38 + 91326168 TTTTTTTTTTATGGTGAAAAAA----TTTATATTTAGATTTA a score=13209.0 s hg17.chr17_random 355782 17 + 2618010 TAGCCAGCTGGACTCAG s panTro1.chrUn_random 4804397 17 + 240967748 TACCCAGCTGGACTCAG s mm5.chr14 69013007 17 + 117079080 TAGCCATCTGGACTCAG s rn3.chr14 23002124 17 + 112220682 TAACCATCTGGACTCAC s canFam1.chr4 40662413 17 + 91326168 TAGCCGGCTGGACTCAG s danRer1.chrNA 346016314 17 + 390413307 TAGTGACATGAAATTAA a score=10852.0 s hg17.chr17_random 355799 10 + 2618010 TTTAGGTGAT s panTro1.chrUn_random 4804414 10 + 240967748 TTTAGATGAT s mm5.chr14 69013024 10 + 117079080 TTTAGATGAT s rn3.chr14 23002141 10 + 112220682 TTTAGATGAT s canFam1.chr4 40662430 10 + 91326168 TTTAGATGAT s galGal2.chr19 4039142 10 - 9463882 TTCAAACGTT s danRer1.chrNA 346016331 10 + 390413307 TTTACTAGTT a score=88073.0 s hg17.chr17_random 355809 53 + 2618010 --------CCCAATTTTGTT-ACAACATCGAAAGCATCATAATCAGGAGCAAGTCGAACATA s panTro1.chrUn_random 4804424 53 + 240967748 --------CCCAATTTTGTT-GCAACATCCAAAGCTTCATAATCAGGAGCCAGTCGAACATA s mm5.chr14 69013034 54 + 117079080 --------CCCAATCTTGTTGGCAACATCTAGGGCATCATAATCAGGAGCCAAGCGAACATA s rn3.chr14 23002151 54 + 112220682 --------CCCAATCTTGTTGGCAACATCTAGAGCATCATAATCAGGAGCCAAGCGAACATA s canFam1.chr4 40662440 54 + 91326168 --------CCCAATTTTGTTGGCAACATCCAAAGCATCATAGTCAGGAGCCAGTCGAACATA s galGal2.chr19 4039152 54 - 9463882 --------GCTCACCTTGTTGGCTACATCCAACGCATCGTAGTCAGGAGCCAGTCGGACGTA s fr1.chrUn 143077423 53 - 349519338 ---------CTCACCTTGTTTGCAACATCCAATGCATCGTAATCTGGTGCCAGACGAACATA s danRer1.chrNA 346016341 62 + 390413307 CATAAATTATTTACCTTGTTGGCAACATCCAATGCATCATAATCTGGTGCGAGACGAACGTA a score=29442.0 s hg17.chr17_random 355862 21 + 2618010 TGCCTTCTTCTCTTTATCAGG s panTro1.chrUn_random 4804477 21 + 240967748 TGCCTTGTTCTCTTTATCAGG s mm5.chr14 69013088 21 + 117079080 CGCCTTCTTCTCTCCGTCGGG s rn3.chr14 23002205 21 + 112220682 TGCCTTCTTCTCTCCGTCAGG s canFam1.chr4 40662494 21 + 91326168 TGCTTTCTTCTCTCCATCAGG s galGal2.chr19 4039565 17 - 9463882 TGACTGCTTCCCTCT----TA s fr1.chrUn 143077476 21 - 349519338 CGCCTTCTTTTCACCGTCAGG s danRer1.chrNA 346016403 21 + 390413307 TGCCTTCTTTTCGCCATCGGG a score=2051.0 s hg17.chr17_random 355883 2 + 2618010 AC s panTro1.chrUn_random 4804498 2 + 240967748 AC s mm5.chr14 69013109 2 + 117079080 CC s rn3.chr14 23002226 2 + 112220682 CC s canFam1.chr4 40662515 2 + 91326168 CC s galGal2.chr19 4039582 2 - 9463882 CC s danRer1.chrNA 346016424 2 + 390413307 CC a score=-1556.0 s hg17.chr17_random 355885 2 + 2618010 AA s panTro1.chrUn_random 4804500 2 + 240967748 AA s mm5.chr14 69013111 2 + 117079080 TT s rn3.chr14 23002228 2 + 112220682 GT s canFam1.chr4 40662517 2 + 91326168 TG s galGal2.chr19 4039584 2 - 9463882 TT a score=331906.0 s hg17.chr17_random 355887 172 + 2618010 ATCAGGGTGGTGACCTTGGCCACATCACTGTCATAGACCTTCTTCACAGCCTGTCTGATCTGGTGCTTGTTGGCTTTAACATCCACAGTGAACACAAGCGTGTTGTTTTCTTCTATCTTCTTCACGGCCGACTCAGTGGCCAGCGGAAACTTGATGATAGCATAGTGGCCAA s panTro1.chrUn_random 4804502 168 + 240967748 ATCAGGGTGGTGACCTTGGCCACATCACTGTCATAGACCTTCTTCACAGCCTGATTGATCTGGTGCTTGTTGGCTTTAACATCCACAAAGAACACAAGCATGTTGTTTTCTTCTATCTTCTTC-CAGCCGACTCAGTGGTCAGTGGAAACTTGAT---AGCATAGTGGTCAA s mm5.chr14 69013113 172 + 117079080 ATCAGGGTATTGACTTTGGCCACATCGATGTCATAGAGTTTCTTGACAGCCTGTTTGATCTGATGCTTATTGGCCTTGACATCCACAATGAACACAAGAGTGTTGTTGTCCTCTATTTTCTTCATGGCTGACTCCGTAGTCAGTGGGAATTTGATGATAGCATAGTGGTCAA s rn3.chr14 23002230 172 + 112220682 ATCAGAGTATTGACTTTGGCCACATCTATGTCATAGAGTTTTTTCACGGCCTGTTTGATCTGGTGCTTGTTGGCCTTAACATCCACAATGAACACAAGCGTGTTGTTGTCCTCTATTTTCTTCATAGCCGACTCGGTGGTCAGTGGGAATTTGATGATAGCATAGTGGTCAA s canFam1.chr4 40662519 172 + 91326168 ATCAAGGTGTTGACCTTGGCCACATCAATGTCATAGAGCTTCTTCACAGCCTGTTTGATCTGGTGCTTATTGGCCTTGACATCCACAATGAACACAGGTGTGTTGTTGTCTTCTATTTTCTTCATGGCTGACTCAGTAGTTAAGGGGAACTTGATGATGGCATAGTGATCAA s galGal2.chr19 4039586 172 - 9463882 ATTAAGGTGTTGACCTTGGCCACATCAATATCATACAGCTTCTTGACTGCCTGTTTGATCTGGTGCTTGTTTGCCTTGACATCAACAATGAAAACCAGAGTATTGTTATCCTCTATCTTCTTCATTGCAGATTCTGTGGTCAAAGGGAACTTGATAATGGCATAATGGTCAA s fr1.chrUn 143077627 172 - 349519338 ATTAGAGTGTTGACTTTGGCAACATCAATGTCATACAGCTTCTTGACAGCGTGCTTGATCTGGTGTTTGTTTGCCTTGACATCCACGATGAACACAAGTGTGTTATTATCCTCTATCTTCTTCATGGCAGACTCTGTAGTCAGGGGGAACTTGATGATAGCATAGTGATCCA s danRer1.chrNA 346017039 172 + 390413307 ATCAGTGTGTTGACTTTGGCCACATCGATGTCGTACAGTTTCTTGACGGCATGTTTAATCTGATGCTTGTTTGCCTTTACGTCAACAATAAACACCAGAGTGTTGTTGTCCTCGATCTTCTTCATGGCCGACTCAGTGGTCAAGGGGAACTTGATGATGGCATAATGGTCCA a score=1314.0 s hg17.chr17_random 356059 1 + 2618010 G s panTro1.chrUn_random 4804670 1 + 240967748 G s mm5.chr14 69013285 1 + 117079080 G s rn3.chr14 23002402 1 + 112220682 G s canFam1.chr4 40662691 1 + 91326168 G s galGal2.chr19 4039758 1 - 9463882 G s fr1.chrUn 143077799 1 - 349519338 A a score=-31.0 s hg17.chr17_random 356059 1 + 2618010 G s danRer1.chrNA 346017439 1 + 390413307 A a score=308737.0 s hg17.chr17_random 356060 182 + 2618010 CTTGTTTCTCGTGGGGGTACTCTTCCGAGGATATCTGGGCTGCCTCCGGAGTCGCAGTGTCTTGGGCCGCCTGAAGGTGAGTGACATGCGGATCTTCTTTTTT----GCGTGTGGCTGCGGACACCTTTCAACACTGCCTTCTTGGCCTTTAAAGCCTTCGCTTTGGCTTCGGCTTTAGGAGGAGC s panTro1.chrUn_random 4804671 182 + 240967748 CTTGTTTCTCCTGGGGGTGCTCTTCCGAGGATATTTGGGCTGCCTCTGGAGTCGCAGTGTCTTGGGCCACCTGAAGGTGAGTGACATGAGGATCTCCTTTTTT----GCGTGTGGCTGTGGACACCTTTCAACACTGCCTTCTTGGCCTTTAAAGCCTTCACTTTGGCTTCGGCTTTAGGAGGAGC s mm5.chr14 69013286 180 + 117079080 CTTGTTTCTCCTGGGCGCACTCTTCCGAGGATATTTTGGCTGCCTCCGGAGCCGCAGGGTCTTGGGCCGCCGGAAGGTGGGTGACGTTCGGATCTTCTTCTTT------TTGTGGCTGTGGACGCCTTTCAGCACCGCCTTCTTAGCTTTCAAGGCCTTCGCTTTGGCTTCGGCTTTGGGAGGGGC s rn3.chr14 23002403 180 + 112220682 CTTGTTTCTCCTGGGTGCACTCTTTCGAGGATATTTTGGCTGCCTCCGGAGCCGCAGGGTCTTGGGCCGCCGGAAAGTGGGTGACGTTCGGATCTTCTTCTTT------TTGTGACTGTGGACACCTTTCAGCACTGCCTTCTTAGCTTTCAAGGCCTTCTCTTTGGCTTCGGCTTTGGGAGGGGC s canFam1.chr4 40662692 186 + 91326168 CTTGTTTCTCCTGGGGGCGCTCTTTCGAGGATATTTGGGCTGCCTTCGGAGACGCAGGGTCTTGGGTCGTCGGAATGTAGGTGACGTGCGGATCTTCTTTTTTTTGTGACTGTGACTGTGCACGCCTTTCAGCACCGCTTTCTTAGCTTTCAAAGCCTTTGCTTTGGCTTCGGCTTTGGGAGGGGC s galGal2.chr19 4040057 180 - 9463882 CTTGTTCCTCCTTGGGGCGCTCTTCCGGGGGTATTTGGGCTGCCGTCGCAGGCGCAGGGTCTTGGGCCTCCTGAAGGTGGGTGATGTGCGGATCTTCTTCTTC------TTGTGGCTGAAGACTCCCTTCAGGACGGCCTTCTTGGCCTTCAGCGCCTTTGACGGGGCCTCCGTCTTCGGTGGCAC s fr1.chrUn 143077988 180 - 349519338 CTTGTTCCTACGGGGAGCACTTTTGCGAGGGTACTTGGGCTGCCTGCGGAGACGCAGAGTTTTGGGGCGACGGAAGGTTGGAGAAGTCCTGATCTTCTTCCTC------CTCTGGCTGTGTACACCCTTGAGCACGGCCTTTTTGGCCTTCAGAGCCTTTGACTTGGCTTCAGTCTTGACAGGGAC s danRer1.chrNA 346017440 180 + 390413307 CTTGTTTCTGCGTGGAGCGCTTTTCCTAGGGTACTTGGGCTGCCTCCTCAGACGCAGGGTTTTGGGCCGGTGGAAGGTCGGGGTAGTCCTGATCTTCTTCTTC------TTCTGGCTGTGGACTCCCTTCAGCACAGCCTTCTTGGCTTTCAGGGCCTTAGATTTGGCCTCAGTCTTTGCCGGGAC a score=3279.0 s hg17.chr17_random 356242 2 + 2618010 AG s panTro1.chrUn_random 4804853 2 + 240967748 AG s mm5.chr14 69013466 2 + 117079080 AG s rn3.chr14 23002583 2 + 112220682 AG s canFam1.chr4 40662878 2 + 91326168 AG s galGal2.chr19 4040237 2 - 9463882 GG s danRer1.chrNA 346017620 2 + 390413307 AG a score=2422.0 s hg17.chr17_random 356244 3 + 2618010 GAG s panTro1.chrUn_random 4804855 3 + 240967748 GAG s mm5.chr14 69013468 3 + 117079080 GAG s rn3.chr14 23002585 3 + 112220682 GAG s canFam1.chr4 40662880 3 + 91326168 GGG a score=29560.0 s hg17.chr17_random 356247 33 + 2618010 CTTC---CTTCGCTTTTGGTGCCATCTTG--TGAAAAG s panTro1.chrUn_random 4804858 33 + 240967748 CTTC---CTTCGCTTTCGGTGCCATCTTG--TGAAAAG s mm5.chr14 69013471 38 + 117079080 CTTCCTTCTTCGCTTTCGGCGCCATCTTGGCTGAAAAG s rn3.chr14 23002588 37 + 112220682 CTTCCTTCTTTGCTTTAGGCGCCATCTTGG-CGAAAAG s canFam1.chr4 40662883 37 + 91326168 CTTCCTTCTTCGCCTTCGGCGCCATCTTCG-TGAAAGG s fr1.chrUn 143078848 33 - 349519338 ---CCTTCTTCGCCTTCGGTGCCATGTTG--GGAAAGG a score=1048.0 s hg17.chr17_random 356280 15 + 2618010 CGAAAAACATTATTT s panTro1.chrUn_random 4804891 15 + 240967748 TGAAAAACATTATTT s mm5.chr14 69013509 10 + 117079080 C-----CCATTTTTT a score=2509.0 s hg17.chr17_random 356295 9 + 2618010 CAAAAATAA s panTro1.chrUn_random 4804906 9 + 240967748 CAAAAATAA s mm5.chr14 69013519 9 + 117079080 TTTAAATAA s canFam1.chr29 35333569 9 - 44859674 taaaaaaaa a score=4206.0 s hg17.chr17_random 356304 41 + 2618010 -TTTGTTTACAGTAAATCTgcctaagaatagtttccaaagta s panTro1.chrUn_random 4804915 41 + 240967748 -TTTGTTCACAGTAAATCTgcctaatagtagtttccaaagta s canFam1.chr29 35333578 36 - 44859674 tttttttt------aatCTGTCGGTGCTTTCTATTCAAAGTA a score=1349.0 s hg17.chr17_random 356345 17 + 2618010 cttttggtaatttttaa s panTro1.chrUn_random 4804956 17 + 240967748 cttttgctaatttttaa a score=601.0 s hg17.chr17_random 356362 7 + 2618010 -ccttaaa s panTro1.chrUn_random 4804973 7 + 240967748 -ccttaaa s canFam1.chr5 43347701 7 - 92064832 tctttaa- a score=5553.0 s hg17.chr17_random 356369 70 + 2618010 gttaagctaagtaaaagatttgcattaaatatctagatcatttataaataagatacaatactaaaacatt s panTro1.chrUn_random 4804980 70 + 240967748 cttaagctaagtaaaagatttgcattaaatatctagacaatttataaataagatacaatactaaaacatt s rn3.chr5 49750930 67 + 173106704 CTT---CAAAGTCCATCATTAACATTATAAATTGTGTTTCCTGATTCCTTAGGGGGAATGCTTAAGCATT s canFam1.chr5 43347708 52 - 92064832 --------gagtaaaaaatatcctttaaggat-------atttttgcttgagatggaattctagact--- a score=3098.0 s hg17.chr17_random 356439 24 + 2618010 aattactgaacataaataattcaa s panTro1.chrUn_random 4805050 24 + 240967748 aattactgaacataaataattcaa s canFam1.chr5 43347760 24 - 92064832 gattgctttttaaaaatcttttaa a score=100.0 s hg17.chr17_random 356463 1 + 2618010 g s panTro1.chrUn_random 4805074 1 + 240967748 g a score=7584.0 s hg17.chr17_random 356464 60 + 2618010 tttatgtactttt------------------ggcttcctatttttacagagagactaaagatattttggcccgttaat s panTro1.chrUn_random 4805075 60 + 240967748 tttatatactttt------------------ggcttcctatttttacagaaagactaaagatattttggcccgttaat s canFam1.chr13 44649730 78 - 66159989 tttattcccttcttccttaggtttttaataaagcttaaaatttttctataaaaactgtgaacattttgtccaattagt a score=53304.0 s hg17.chr17_random 356524 655 + 2618010 aaacatgtttttttctg-ccacactgaggaattgtattatgaggaaacacatccctctagatgttgggagatggtatattcatacattttctaacctactatag-aatgctaatatatgacagtttataactgtctacttcctagttttctctggaaaataaaagattactaagtattaaaattataatcaatatatgtaaataaaactactagaaataatagaataactagaaa-----ctatgcaaagcatgcaagaaaagtaggGCATGTTTCGCAAGTAAAGTAGGTTGCATTTTTTATAAGGaaaaccatacagaagatacaaataaaaagagatacctaaccttccctgtgttatatttgtatgggtaaaatgttatgttttcagaaattatataaaattcctggaagtttgtcaatgtcctccttatccatgctatgtgccactatagagtaatgagtcataattccaattattactttaaatgttgtgccaggcacagtggctcatgcctataatcccagcactttaggaggctgaggcgggtggatcacaaggtcaggagatccagaccatcctggctaacccggtgaatctccatctctattaaaaatataaaaaattagcccggc-gtgatggcaggcacctgtagtcccag s panTro1.chrUn_random 4805135 659 + 240967748 aaacatgtttttttctgcccccactgagaaattgtattatgaggaaacacatccctctagatgttgggagatagtatattcatacattttctaacctactatagaaatgctaatatatgacagtttataactgactacttcctagttttctctggaaaataaaagattactaagtattaaaattataatcagtatatgtaaatagaactactagaaataatggaataactagaaacaaccccatgcaaagcatgcaagaaaagtagggcatgtttcccaagtaaagtaggatgtattttttataaggaaaaCCATACATAAGATAC--ataaaaagagatacctaaccttccctgtgttacatttgtatgggtaaaatgttatgttttcagaaatgatataaaattcctggaaatttgtt-atgtcctccttatccatgctatgtgccagtatagagtaatgagtcataattccaattattattttaaatattgtgccgggcgcagtggctcatgcctgtaatcccagcactttgggaggctgaggaggatggatcacgaggtcaggagatccagaccatcctggctaacccggtgaatctccgtctccactaaaaatacaaaaaattag-ccggctgtagtggcaggcgcctgtagtcccag a score=210646.0 s hg17.chr17_random 357179 2577 + 2618010 ctactcaggaggctgaggcaggagaatggcgtgaacccaagagacagagcttgcagtgagcccagatcgcaccgctgcactccagcctgggcgacagagcaagactctgtctctaaataaagaaataaataaatgttgtctgccacagaaaaaatcgaatatccttgtcagttgtggtataatgaactctcatcagatctttcatcacagccatttcatactttttgtcatttagatattatttccccctgatgctttcctgaaagctcctgcaatcaactacaggtcagaatgttcgtctccaagacaggactccctctgagactcacagaaaagactatgacaggtactctggttataggcttctgatgatattgcttaaataactttaagaccatacacttgactcagttaaggtctccagaagtccggttgggaaactgatgggttcatgacactgctaactcaagatcc-acaagactggaattgattacatggcactgaatgaactgatgaaaattgattataattgtatagctttttggagcattgctgg----ttaatattctagtttctggatttaagaaatctctttctcttactctaactgtaacttacaacaatttagtagattatacttttgtaaacagaaatgaagcgtttatcttttttt-cttgcctgatttttccagaattttgaaatccttactgaatactcttatttccacgatgatatagttgttagcaaaagtccaataagaatctattcaccttataacaggacataattggaaattttggttatattatcaaggtttttactggaacatcataattaggaagtgtacctaagatcagttatgaccagcaattttaaggaagtaaggttcacttttatggagacaatgcttacaaagcactgtggaaaaCTTTGAGGAAAGTTCTTCCTCAAAGATTATAAAGTCACAA------------------CTACCCACTATTTTTATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCCAAATCACTTGTCCTAGCttgctccagcatgcctggacagaactagacaagccccagcccatactgcatgccattccttatttggagatgcttccttaactatccctgggcaacttccttttctttctttcttctattccccttacctaattaagaaagttttaaacaaacagccaatcgggtaaagtgtaaaatgggaggtcctattccagccaatggaaactggacacagcagtagggtagacacgtcaggttataagtaactctgtctcctttgtttggtgtgctcttgtagctggacagctattgagtagcaccctttgtgcagaaaaataaagctcgccttgctaagagatcatttgttcccatgttagttcttt----TTTTGGGGGGGGGAACATAAAAAACTTCATTCCCAACagcactctgagaaaacccagcctgatacctagattacagggttcacagccttataggttagtaaggaaggtcatttcctggtaggcccaggaatttagggatattttggggcctcaagaagagaggaattcacacaaagctataaggactgcagctgaaatttgatagcatgttcttggcttggcttttagcctgaataaggcctttaaaagtcaaatctgagattctgtatgaaaacttccagcaaagaaacctgaaagcacctacgtggtcatctcctgttcttgctgcacttacgtaaataatcaagcaaaatctaacaaaactagacttatttttaaaacaagaatagtcttactttgattatgatcaaaaatgatggttactacagagagaaattttatctttcaaaggaaaagtataacacagccgggcatggtggcacatgcctataattacagccctttggaaggccaggagttcaacatcagcctgggcgacatggtgaaacccc-gtctctaccaaaaatacaaaaattagatgggcatgacggcatgtgcctgt-gtcccaggtaatcaggaggctgaggagggaggatcgtttgcacccaggaggtagaggttgcagtgagctgagattgcacctttgcactccagcctgggtgacagagccagaccctgtctcaaaaaaaaattttttaaaggaaaactatagccattgtgagttatcagattctagtcttgtttcttgtttctgggctatttttacctctttgtaaactggatcctgccatctgatgaattttGTCCCACAATGATACTTGGGGAACAAGAAGCCAAGTATTGTCTCTCCTACTAATGTATCTAGTGTCAGTTAATTTGAAGGTCTCCAACCCTGGAACAAAGTTAGAAGAGGAAGGTTCTGCTCCCCAAaatgcataaccaaattgtgctacattcatgtaatggaatactatttagccatagaaaggaacaagatatcaacacacacaaagacatgagtgaatcttgcatgcacattgctaagtggaagaagacagtctgaggaggatacacacagtgtgacctcatttaatgagacactggag-aaggcaaactacacagatgggaagcc s panTro1.chr14 16899 2564 - 97804244 gtactcgggaggctgaggcaggagaatggcgtgaacccgggagatggagcttgcagtgagccaagatcacgccactgcacccaagcctgggcaacagagtgagactctgtctctaaat----aaataaataaatgttgtatgccacagagaaaatcgaatatccttgtcagctgtggtataatgaactctcatcagatctttcatcacagccatttcatactctttgtcatttagatattattt-cccctgatgctttcctgaaagctcctgcaatcagctacaagtcagaatgttcgtctccaacacaggactccctctgagactcacggaaaagactatgacaggtactctggttataggcttctgatgatattgcttaaataactttaagaccatacacttgactcagtgaaggtctccagaagtctggttgagaaactgatgggttcatgacactgctaacccaagatccaaaaagactggaattgattacatggcactgaatgaactgatgaaaattgattgtaattttatagctttttggagcattactggttctttaatgttctagtttctggatttaagaaatctctttctcttaatctaactgtaacttacaacaatttagtagattatacttttataaatagaaatgaggcatttatctttttttccctgcctgatttttccagaattttgaaatccttactgaatactcatattttcacgatgatatagttgttagcaaaagtccaataagaatctgttcaccttataac-ggacataattggaaattttggttatattatcaaggtttttagtggaatatcatatttaggaagtgtacctaagatcatttatgaccagcaattttaaggaagtaaggttgacttttatggaaacaatgcttacaaagcactgtgagaaa---TG-GGAAAGTTCTTCTTCAAAGATTATAAAGTCACAATTTCTTACTATAAGATTGCTATCCACTATTTATA----------------------TGTGTGTGTGTGTGTGTGTATTCCAAATCACTTGTCCTAGCttgctccagcatgcctggacagaactagataagccccagcccatagtacatgccattccttatttggagatgcttccttaactatccctgggcaacttccttttctttctttcttctattccccttacctaattaagaaagttttaaactaacagccaatcgggtaaagtgtaaaatgtgaggtcctattccagccaatggaaactggacacagcactagggtagacacatcagattacaagtaactctgtctcctttgtttggtgtgctcttgtggctggacagctattgagtagcaccctttctgcag-aaagtaaagcttgccttgctaagagatcatttgttcccacattaattcttttttatttt-------ggaacaccagaaacttcattcccaacagcactctGAgaaaagccagcctgatacctagattacagggttcacagccttacaggttagtaaggaaggtcatttcctggtaggcccaggaatttagggatattggggggcctcaagaagagaggaattcacacaaagctataaggactgcagctgaaatatgatagtaagttcttagcttggcttttagcctgaataaggcctttaaaagtcaaatctgagattctgtatgaaaacttccagcaaagaagcttgaaagcacctacgtggtcatctcctgttcttgatgcacttatgtaaataatcaagcaaaatctaataaaactagacttatttttgaaacaagaatagtcttactttgattatGATCAAAAATGATGGTTACCACAGagagaaattttatgtttcaatggaaaactataacatggctggtcatggcagcacacacctataattccagcactttgggaggccaggagttcaagaccagcctgggcaatgtggtgaaacccctgtctctaccaaaaatacaaaaattagatgggcatgatggcatgtgcctgtagtcccagctaatcaggaggctgaggagggaggatcgtttgcacccaggaggtagaggttgcagtgagctgagattgcacc-ttgcactccagcctgggtgacagagccagaccctgtctcaaaaaaaatttttttaaaggaaaactatagccattgtgagttatctgattctagtcttgtttcttgtttctgggctatttttacctctttgtaaactgGATCCTGCCATCTGCTGAATTTTGTCCCGCAATGATACTTGTGGAACAAGAAGCCAAGTATTGTCTCTTCTACTAATGTATCTATTGTCAGTTAATTTGAAGGTCTCCAATCCTGGAACAAAGTTAGAAAAGGAAGGTTTTGCTCCCCAAaatgcataaccaaattgtggtacattcatataatggaatactatttagccatagaaaggaacaggctatcaactcacacaaagacatgagtgaatcttgcatgcacattgctaagtggaagaagacagtct---gagaatacacacagtgtgacctcatttaatgagacactggagaaaggcaaactacacagatgggaagcc a score=21477.0 s hg17.chr17_random 359756 246 + 2618010 attggctccatggggtgggggtttgaggcattccatatgatactttaatagtgggatatctgccacaatgcatttgtcgaaatacgcagaattttacagccaaatggttaaagcaaactctattcaaattaaatccaattactcaggatgtggagtatcccaggacagaatacatcatgtgaaaaagaatttatgctacaaattactatggtttggatgtggtttgtccccacaaaaactcatgtt s panTro1.chr2 77793896 246 + 203813066 attggctccatggggtgggggtttgaagcattccatatgatactttaatagtgggatatctgccacaatgcatttttcaaaatatgcagaattttatagccaaatggttaaagcaaactctattcaaattaaataaaattactcaggatgtggagtatcccaggtcggaatacatcatgtgaaaaagaatttatgctacaaattaccatggtttggatgtggtttgtccccgcaaaaactcatgtt a score=139870.0 s hg17.chr17_random 360002 1738 + 2618010 gaaatttgactcccactgcgtcagtgtggggcggtggggcctagtggatggtgtttgggtcgtggggacggatccctcatgaatagattaatgtcctccatgggggtgagtgagttctgttctcacaggaatagat-aattcctgcaggagtaggtaattaaaaagagtctggcttccttggcttccctcttgctttcacttctgctgtgtgatctctggtgcaccccttgctccccttccacttt-ccaccatgaggtgaaaaagactgaggccccgccagatgcaactgcccaatctcacacattccagccaccagtattgtcaaacaaatgaaacttttttacttataaattacgcagcctcaggtattc-tgttacagaagcacaaaatggactgagacacaaatctaggtaaaaact----------------------------------------ttgaaaatgaaaagaatctgtaggctgaaggcacatgaactatacttcattattggattccattttataaagttctttccaacagaagcaattgtgaacaattgtaaaaccacagtgtctgtatctggaataaaacaatgacttacataagtcgcagatggtgggaaccaggtttcttactgttgaagtgggaggttacaaattagcaaggcgagaaggctagaatgattcatgtgatagtagatcagaggtggagacatcaatgtaaacttatgtttagtttaatatagacacacacagttctacatagaaaactttataattaggtgtgtataggtaggttagacacacacatatacttcctagcattgccaatgagggagaagatacaatgtgctcattcagcagccagatgtaagttttcctaccattctgaaaggaatcaggctctttgaagaaatgtctgatactagaactgggacagtaaatataggagccaggataat-ctggaagtatcagaaagtaagta-----caaaaaaattaaaacatatcaaagaaaaataagagccaataaaaacagctactgatggccaacacaggaatgaattgtgcaacataatactgtagtgttgaataataactaaagcttaaggtaattatctag-gtgtctgtatttgtatacctaggtgaataagcaaatggagttgcatagaaatctcctttgcaaaagaattccaaataattgatgtagacactcagccgtcaagaaggtggagccaactcctgac-------ggagtgaggctctgcatagtgacttgctccaaaagaacacatgcagtgcggacaaggaggagaaataacctcacagtggagaaacctgacaaacattagctctgccaaatgatccaagtgaacatcaaaggtgacagttcaccttgagaacatgaagtgacaatgggggacattctacaacattcctgaccagtcctcctcagtgctatgaaggtcatcatgagatggaaagcctaacacactgtcacagccaggaagagcctatgtgatgactacatgtcgtgtgggatcctggatgggatcctgggtcagagtaagatagaactaagggaatccaaatgaaatatgaactttagttaataacagtctatcagtattggttcattaactgcggcaaattatgtaagatattaataagccatgtgagacacactgatagaagatgttaataagagaggaaactaggttgcggctacatgggaaatctctgctttttttttttttgacgatttctgtgtaagtaaaaaaaagacg s panTro1.chrUn_random 4807874 1768 + 240967748 gaaatttgacccccactgtgtcagtgtggggcagtggggcctagtggaaggtgtttgggtcatggggatggatctctcatgaatagattaatgtcctccatgggggtgagtgagttctgctgtcacaggaatggattaattcctgcaggagtagctagttaaaaagagtctggtttccttggcttccctcttgctttcacttttgctatgtgatctctggtgcaccccttgctccccttccacttttccaccatgaggtgaaaaagactgaggccccaccagatgcaactgcccaatctcagacattccagccaccagtattgtgagccaaatgaaccttttttacttatacattaccccgcctcaggtattcctgttacagaagcacaaaatggactaagacacaaatgtaggtaaaaactcactgaaggtgtagggaaaatggtgttgacctaagtcactttgaaaatgaatagaatctgtaagctgaaggcaaatgaactatacttcatcattggattccattttacaaagttctttccaacagaagcaattgtgaacaattgtaaaaccacagtgtctgtatctggaataaaacaatgacttacataagtcgcagatggtgggaaccaggtttctcaccgttgaagcggaaggttacaaattagcaaggcgagaaggctagaatgattcctgtgatagtagatcagaggtggagacatcaacgtaaacttatgtttagtttaatatggatacacacagttctacatagaaaactttataattaggtgtgtctaggtaggttagacacacacatatacttcctagcattactaatgagggacaagatacaatgtgctctttcagcagccagacataagttttcctaccattctgaaaggaatcaggctccttgaagaaatgtctgatactagagctgggagagtaaatataggagccaggataattctggaagtatcagaaagtaagtaagtactaaaaaaattaaaatatatcaaagaaaaataagagccaataaaaaaagctaccgatggccaacacaggaatgaattgtgcaacataatgctgcagtgttgaataatagctaaagcttaaagtaattatctagagtgtctgtatttgtatgcataggtgaataagcaaatggagttgcatagaaatctcctttgcaaaagaattccaaataattgatgtagacactcagccatcaagaaggtgaagccaactcttcactccctaaggagtgaggctctgcagagtggcttgctccaaaagaacacatgcagtacggacaaggaggaaaaataacctcacagtggagaaacctgacaaacagtagctctgccaaatgatccaagttaacatcaaagctgacagttcaccttgagaacatgaagtgacaatgagggacattctacaaaatgcctgaccaatcctcctcagtactatcaaggtcacc-tgagatggaaagcctgacacactgtcacagccaggaagagcccacatgatgactacatgtcatgcgggatcctggat------------cagagtaagacagatctaagggaatccaaatgaaatatgaactttagt----------ctatcagtattggttcattaactgtgacaaattgtgtaagatattaataagccatgtgagacacactgatagaagatgttaataagagaggaaactaggttgcggctacatgggaaatcttt---ttttttttttttgacaattgctgtgtaagtaaaaaaa-gatg a score=41532.0 s hg17.chr17_random 361740 346 + 2618010 taaaataaaactttatttaaaaCA------CTTTTTTT---AACACTTCCTTGTTTAATTATTTATACCATGAATTACTAGTAATTGAC----ACTGTTAACTAGTCCTGTTTT-T---TAAAATAAGAGCAATTATGACACAAAAAATTAAACAGTGCAGACTGATACATAAATCAAA-----TGTTCTTTACATGTTTTCTGTTACTGTAGTAACACACATGTGTAAACTTAATTATCACATGTTTTTCTTGTGCTGTGGTTGTGTCCTGGGTTCATTCTCTAAAATGCTGTTCATCTTAGACCAGGAAAAATA-TTAACCATACAGACTCTG---TTTCAAGTCATAGCTGAATATTTTCAAAAGAGTG s panTro1.chrUn_random 4809642 357 + 240967748 taaaataaaactttatttaaaaCA------CTGTTTTTTTGAGCACTTCCTTGTTTAATTATTTATACCATGAATTACTAGTAACTGAC----ACTGTTAACTAGTCCTGTTTT-TGGATTAAATAAGAGCATTTATGACACAAAAAATTAAACAGTGCAGACTGACATATAAATCAAAACAAATGTTCTTTACATGTTTTCTGTTACTGTAGTAACACATATGTGTAAACTTAATTCTCCTATTTTTTTCTTGTGTTGTGGTTGTGTCCTGGGTTCATTCTCTAAAATGCTGTTCACCTTAGACCAGGAAAAATA-TTAACCATACAGACTCTG---TTTCAATTCATAGCTAAATATTTTCACAAGAGTG s canFam1.chr6 52849978 361 - 79106041 TGAATTAAAAGTGTATTAACAATAACTATTTTATTTTTTCTAACACATAATTGCATAATTAGTTCTACTA-GGATTACTAATAATTGACCATTATTGTT--CTACAATTGTTTTAT---TTAAATAATAACATGCATGTCAGAGAAAACTGAA---TACACCATAATATATAAATCACA-GAGATCTGTACCACATATTTTATGTTAAGACAATAACACATATATA-ACATTATGTAAACACGTAGTTTTGTCATCATGAAGGAGTGTCATTGATTAGCTCTGTATAAGGCCGGTCATCTTAGATAATGGGAAATATTTGGATTTACAGCATGTGATATTTCACACCATGGCTGAACCTGTTAAAAAAAATG a score=20009.0 s hg17.chr17_random 362086 153 + 2618010 ACTTTGTAAAAAC-----------ATGTTCCAATGGCAAATTGATTCATTGTGATGGGATCAATTATTCC-AAAGACTTCTTGTCTTTATTTTGTTGCCATGCCTACCTTTT-AGCCATGATA----CAACAGAATCAAATATTGGCCACTGGG-AAAAAATATTCAAAGA s panTro1.chrUn_random 4809999 156 + 240967748 ACTTTGTAAAAAT-----------ATGTTCCAATGGCAAATTGATTCATTGTGATGGGATCACTTATCCCGAAAGACTTCTTGTCTTTATTTTGTTCCCATGCCTACCTTTTTAGCCATAATA----CAGCAGAATCAAATATTGCTCACTGGGGAAAAAATATTCAAAGA s canFam1.chr6 52850531 159 - 79106041 atttttttaaaatcttttttaaaaatGTACAAATGGCCAGGTGATTCATTGTGGCTGGCTCACTTGTTCT-AGGGAA-TCTTGTTTTTATCTTCTTCCCATTCATCATTTTT-AGCAATAATAGAACAAGCAAATTCACAAATTTA---------AAAAGACATTCAAAGA a score=464.0 s hg17.chr17_random 362239 5 + 2618010 AAGAA s panTro1.chrUn_random 4810155 5 + 240967748 AAGAA a score=36290.0 s hg17.chr17_random 362244 264 + 2618010 AGAATGTGAACAGAACTTGTGACCACGATGATTCAATGTTTTACCACAATGCTTTCTAAAACA--AGAGTCTAAAAGGATATTCAAAGTC--AATTTCCTCAGTGAGGCTTTGCAGAAAATGAGGAAACTAGAGAAACAAAAATGGCAGGACATTCTACGGTTGATTTTAAATGTT--GCTATGTTTTATGGGAAAAAATACTTTACCTTTTAAAGAATCACAAAGAATTATTGGAAACCCAAACTCTGGAATGTTTGCAAATTTAGTTG s panTro1.chrUn_random 4810160 265 + 240967748 AGTATGTGGACAGAACTTATGACCATGATGATTCAATGTTTTACCACAATGCTTTCTAAAACAGAAGAGTGTAAAAGGATATTCAAAGTC--AATTTCCTCAGCGAGGCTTTGCAGAAAATGAGGAAACTAGAAAAACAAAAATGGCAGGACATTCTACAGGTGATTTTAAATGTT--GCTATGTTT-ACGGGAAAAAATACTTTAACTTTTAAAGAATCACAAAGAATTACTGTAAACCCAAACTCTGGGATGTTTGCAAATTTAGTTG s canFam1.chr6 52851206 258 - 79106041 aGAATGGAAACAGAATTGGTTACAATGAAGATATAATATTTCATCATGATGTTCTTTAAAACA-AAGGGGTTCAAAAATTACTCAAACTCATAATTTATTGCAGTACACTTTGCAGCAAGTGAGAAAA----AGATTTAAAAATGAAAGAATATTTTGGGAATGA-TTTAGATGTTAAGCTTTGTGC------AATAAACCATTTACATCTTAGAGGATCACAAGGAAATATTGAAAGCCCAAACATGAGAAAGATTCTGAATTTATTTT a score=11486.0 s hg17.chr17_random 362508 104 + 2618010 AGCTTCTA-------------------TGTAATTATGTCTATATAGGTAG--CCATGAAGTTGATGATTTCTTAAAAATCTGTGCCTTATTTGTGTAATAAAAGACACAATGAATAATTAATACT s panTro1.chrUn_random 4810425 106 + 240967748 AGCTTCTA-------------------TGTAATTATGTCTATATAGGTAGAACCACGATGTTGATGATTTTTTAAAAATCTGTGCCTTATTTGTGTAATAAAAGACACAATGAATAATTAATGCT s canFam1.chr6 52851648 120 - 79106041 AGATTCTGAATTTAGAGTATTACAGACTATTATAATGTCTATACACCTAA--TCATATAGGTATTAATAGAT--GAGATCTG-GTCTCATTTATGTAATAAAATTCAAAAAGAATTTGTCATACT a score=39133.0 s hg17.chr17_random 362612 458 + 2618010 CATAGGAACAC-TTACgaagggaaaataaatcttggggacccaaaatcactaagctaaagggaaaagtcaagctgggaactgcctagggcaaacccgcctcccattctatccaaagacacccgtctgatcaccgagataaatgcatacctgattgcctcacgtggagagggtaatcagcaatgcaaaagaatgaaaccatttgtctcttacctacctgtgacctggaagccccctgtctggccttctcacctttctggactgaaccaatgtacatcttacacatattgattgatctctcgtgtctccctaaagtgtataaaaccaagctgtgccccgaccaccttgggcccatgttgtcaggatctcctgaggaggcatcacaggtgcacatcctcaagattggcaaaataaactttctaaaaaatctgagagctgtctcagattttcagggttcacaC s panTro1.chrUn_random 4810531 459 + 240967748 CATAGGAAAACCTtatgaagggaaaataaatcttggggacccaaaatcgctaagctaaagggaaaagtcaagctgggaactgcttagggcaaatctgcctcccattctatccaaagacacccacctgctcaccgagataaatgcatacccgattgcctcatttggagagggtaatcagcaatgcaaaagaatgaaatcgtttgtctcttacctacctatgacctggaagccccctgtctgggcttctcacctttctggactgaaccaatgtacatcttacacatactgattgatgtctcatgtctccctaaagtgtgtaaaaccaagctgtgccccgaccaccttgggcccatgttgtcaggacctcctgaggatgcatcacgggcgcacatcctcaagcttggcaaaataaactttctaaaaaacctgagagccgtctcagattttcagggttcacaC a score=26108.0 s hg17.chr17_random 363070 174 + 2618010 ATGTAATGTAGGATGTCAATGTTTATAAAAGGGATGTTATTCTATCTACTATTAGAAATATGCTGTCAATTAACCTTAAACTTTCTCAACAAAA----------------------------------------------TAAAAAATGTTGATGAGGTACAAATAATATATCTAAGCTTAAATAGTGTTGCAGGTTTTAATATGCCTACTTTTCAATTT s panTro1.chrUn_random 4810990 174 + 240967748 ATGTAATGTAGGATGTCAATGTTTATAAAACAGACATTATTCTATCTACTATTAGAAATATGCTGCCAATTAACCTTAAACTTTCTCAACAAAA----------------------------------------------TAAAAAATGTTGATGAGGTACAAATAATACATCTAAGCTTAAGTGGTGTTGCAAGTTTTAATATGCCTACTTTTCAATTT s canFam1.chr7 36831266 220 - 83037113 atctaatgtacgagtccagagattccaaagtaaacattactttatgtaccaccacaaaggtgctgccaattcaactgtgacTTTCTCAAAAAAAAAGAAAAAGAAAGTTTACTTCCATTAAAACCAGAAAAGTTAATTTTTAAGAAATTCAGGTTTGGAATAAATAATACATTTAACCTTAAATAACACTGCGGTTTGTAACACACCTACTTTTCAATGT a score=7234.0 s hg17.chr17_random 363244 138 + 2618010 TTCAATA------CTATCTTTACTAATTTAACACTGTAAGAAAAATGAGTAATTAAAACATGAATAAAAGTGTTTACAGGGGATGCACATGTT----------TCCTCCAGCCTCTGCCTATACCCAACTTTCATCCCAACT---GTCCTGATGGTG s panTro1.chrUn_random 4811164 136 + 240967748 TTCAATA------CTATTTTTACTAATTTAACACTGTAAGAAAAAGGAGTAATTAAAACAAGAATAAAAGTGTTTACAGGGGGTGCAC--GTT----------TCCTCCAGCCTCTGCCCAACCCCAGCTTTCATCCCAACT---GTCCTGATGGTG s canFam1.chr6 37055711 141 - 79106041 TTCAATGTGCATCCAATTGTCAT--ATTGACAATTGTCA--------AACTATCAACATCGGAAGAGAGAGGACCTCATGTGAGGCCCAGGGTAGCCAGGCAGCCACCCCACTCATACCTA--CTCAGGCCCCACTCACACTTGCAGCCAGAT---- a score=20648.0 s hg17.chr17_random 363382 171 + 2618010 GCTCTAAGCATTTCTCCTTTCTCTATACCAAGATCTCTCCCCAGAAACAAACCCAAATCTTACTATATGTTATGGCACGCTATGATGATGAGCAGCGATGAGCAGCCGAAGCCTCAAGGAAGGGATGCTTTTGTAAAACAAGACTTG-TGGAATATAACATGTGAAAGTAAA s panTro1.chrUn_random 4811300 171 + 240967748 GCTCTAAGCATTTCTCCTTTCTCTATACCAAGATCTCTCCCCAGAAACAAACCTAAATCTTACTGTATGTTATGGCACGTTATGATGATGAGCAGCGATGAGCAGCGGAAGCCTCAAGGAAGGGATGCTTTTGTAAAACAAGACTTG-TGGAATATAACATGTGAAAGTAAA s canFam1.chr7 36831597 139 - 83037113 GTTCTCAGAGGTCCTCCTCTGTGAGAAGCAGAATCTGT-----GAAAAGTAC------------------TATGGTGTGCCATG----------GCTATGAAGGGCCAAAGCCCTGATGAAGGGACACTTCTGTAAGATATGTCCTGCTAAAATGCTACAGAAGAAAGTAAA a score=36588.0 s hg17.chr17_random 363553 446 + 2618010 GCCCACGGCAGAGCTCCCTCCTCAGCACACGGGGAGCAGACAGGAAG-TTTTTCCTCACCTTCCTCAATGGCCTGCAGCCACGTCTCCCCAGGTCAGTCTTAAGGACAATGAAACTCTGGTCTTCACTGTGGACACGCCACACTACCAGGGGCTCCAAAGCCATGGTGACCCACCCTCGGGTGGGTCCTGAGGAGAACAAAGCTCTGGTTCTAATTCTAACCCTAACCTTGTCCCAAGACTTTGACACTGAACCTAAATCCTGATCCCTATCCTGGTccctaattctgacc------------ctgactttgatctcgaccctgaccatgaccccacctctaaccatacttctggccctgactctgacccagatcctaatcctatccctaaccctaTTATTATCTTTACAATCTATGTCTAATCTTACCCTCTAGTGCTAAATAGCTGTACCCAAAAGC s panTro1.chrUn_random 4811471 446 + 240967748 GCCCATGGCAGAGCTCCCTCCTAAACACACGGGGAGCAGACAGGAAGCTTCTTCCTCACCTTCCTCAATGGCCTGCAGCCACGTCTCCCCAGGTCAGTCTTAAGGACAATGAAACTCTGGTCTTCACTGTGGACATGCCACACTACCAGGTGCTCCAAAGCCATGGTGACCCACCCTTGGGTAGGTCCTGAGGAGAAAAAAGCTCTGGTTctaatcctaaccctaaccctgtcc-------------ctgaatctaaatcctgatccctaccctggtccctaattctgaccctaactttgactctgactttgatcttgaccctgaccatgaccccacctctaaccatacttctggccctgactctgacccagatcctaatcctatccctaaccctaTTATTATCTTTACAATCTATCTCTACTCTTACTGTCTAGTGCTAAATAGCTGTACCCAAAAGC a score=7715.0 s hg17.chr17_random 363999 36 + 2618010 ACTTTTAAATTATTTAACTTCTTTTCCTTGAATTCT s panTro1.chrUn_random 4811917 36 + 240967748 ACTTTTAAATTATTTAACTTCTTTTCCTTGAATTCT s mm5.chrX 146605453 36 + 160634946 ACCTCAAAATCATGCAGCTCCTTTTCCTTGAATTCT a score=60416.0 s hg17.chr17_random 364035 733 + 2618010 CTAAGGACATCCTAAAGGAGATGTCAATATGTATTTTGCATTCCCTCTGAGTGGTATGGCTTCAGATAAGAAGTTCTAATACTTTGCAAGACATAAAAAGTTTGGAGGGTGACAGCACTGGGTTGTTAGGGATGCATGTTGGCATTCgtggtagtcataggtgctgttctccagatattttcagttcatattttatgaatgcattctgactgttccatcccgcctacttacattttcacatggccacatgacttttt---------------ttttgccaatggaggtgagaagaaataacatgtgactttttcaggagaaatctccaagaaacagagttctattccgcatacttttttctcttttctatagcaatggggatcttactgattgtccctccttctgtctggattcctgtgttaggatgacacggcacagagctacctctcacctgacccatgatgaaatgtaaataaatgaggaagaagatttttgagccactgaaatttggaggttgtttgtcaccacagtttaacctagcccccatttactgatgcaCGGCTGAAGAATGAGTCCGAA-CTGGATCTAGACAAGACATGTGAAGAGCACGCCAGGCTGAGTAAAATTCAAGTGTTGTCTCAAAGATAACACTGAGCACGATATGTTATTGGGGTGGGTGTGGGATAAATAAGGTATATCAGGTGAGAATAACAAG-AAACTCAACTTTAAAAGACGGTG-CCGATTTGGA s panTro1.chrUn_random 4811953 749 + 240967748 CTAAGGACATCCTAAAGGAGATGTCATTATGTATTTTGCATTCCCTCTGAGTGGTATGGCTTCACATATGAAGTTCTAATACTTTGCAAGACATAAAATGTTTGGAGGGTAACAGCACTGGGTTGTTAGGGATGTATGTTGGCATTCAtgatagccattggtgctgttctccaaatattttcagttcactttttatgaatgcattctgac--ttccatcccacctacttaaatttttccatggtcacatgacttttttatttttatttttacttttgctaatggaggtgagaagaaataacatgtgactttttcaggagaaatctccaagaaacagcgttctattccgcatgcttttttctcttttctatagcaatggggatcttattgatggtccctccttccgtctggattcctgtgttaggatgacacagcacagagctacctctcacctgacccgtgatgaaacgtaaataaatgaggaagaagatttttgagccactgaaatttggaggttgtttgtcaccacagtttaagctagcccccattgactgatgcaCAGCTGAAGAATGAGTCCGAAGCTGGATCTGGACAAGACATGTGAAGAGCACTCCAGGTTGAGTAAAATTCAAGTGTTGTCTCAAAGATAACAGTGAGCATGATATGTTATTGGGGTGGGTGTGGGATAAATAAGGTATATCAGGTGAGAATAATAAGAAAACTCAATTTTAAAAGACAGTGTCTGATTTGGA a score=15110.0 s hg17.chr17_random 364796 163 + 2618010 TGCCCCATAATACCAGTAAAGTGAGAAGCAGAGATAAACTAGTCCTAGACAGCTGACTCATGTTGGGGGCAGCCCACTCACAGTGGCCCTGACCCAACTCTGACTAGAGGCCACTTGCTCTCAACACCAGGGTGCTCAATGGCCCGTCCTGGTACTCTGCTCT s panTro1.chr1 86098 163 + 229575298 TGCCCCATAATACCAGTAAAGTGAGAAGCAGAGATAAATTAGTCCTAGACAACCGACTCATGTTGGGGGCAGCCCACTCACAGTGGCCCTGACCCAACTCTGACTAGAGGCCACTTGctctcaacaccagggtgctcaatggcccgtcctggtactctactct a score=7340.0 s hg17.chr17_random 364959 82 + 2618010 ACACTGGTTGTAGGAAGGAATCTACAGGTTGAAATAAGGAGATCATTTCCCTGAGGTTCCGAAGCTCATATTTACTCACCAT s panTro1.chr1 87316 82 + 229575298 acactggttgtaggaaggaatCTACAGGTTGAAATAAGGAGATCATTTCCAAGAGGTTCCGAAGCTCATATTTACTCACCAT a score=8267.0 s hg17.chr17_random 365041 92 + 2618010 TTGTTGTTTACTGCTAATGTTGAGCACTGTCAGTAAAATACATAAAACCCtttgccaatccaggaagtgaaaatgacactttactgttttaa s panTro1.chrUn_random 205343888 92 - 240967748 TTGTTGTTTACTGCTAATATTGAGCACTATCAGTAAAATACATAAAACCCtttgccaatccaggaagtgaaaatgacactttactgttttag a score=27822.0 s hg17.chr17_random 365133 165 + 2618010 tttgcatttctctgcttacaagtggattacacacattttcatgtgctgttggctacttattcattcagaaaacatactaagtgctgg---ctctttttcatgtcctttatcaagtttggatcatgtcatttgctattttcttTCTGATGTAAACTCTC--------AAAGTCTGAA s panTro1.chrUn_random 205343980 165 - 240967748 tttgcatttctctgcttacaaatggattacacacattttcatgtgctgttggctacttATTCATTCAGAAAACATACTAAGTGCTGG---CTATTTTTCATGTCCTTTATCAAGTTTGGATCATGTCATTTGCTGTTTTCTTTCTGATGTAAACTCTC--------AAAGTTTGAA s canFam1.chrUn 84664597 175 - 91062872 TTTCTCTTTCTTTAATTACAAGTTGTTTGAACATATTTTCATATGTTGTTGGCTGTTTATTCATTTAGAAAA-ATACACAGTGCCAGGAACTATCTTCCGGGTTCTTCATCAAGTTTGGACCATGTCAACAGTCATCTGTTTGTGGGCACAAACCCTCACCTACAAAGGGTTTAGA a score=37298.0 s hg17.chr17_random 365298 232 + 2618010 GGGTATTGTCTTT---TCCTGACACATATGTTGTAAATAATTTTCTGGCTTACATTTTGACTTTTAATTTCATTCACGATGTTTTTAATGAATAATTTTAATTTTTATGAATGCAAGTTA-AAATAATTCTTTCATTGTGGTTTCTGA----CACGTCATGCCAATAAGGGTCTTC-TCCTCCAAGAGCACAGAAATATTTGCCAATACTGTCCTTAAAATCGGTCACAGTTTCATTTTTT s panTro1.chrUn_random 205344145 232 - 240967748 GGGTATTGTCTTT---TCCTGACACATACATTGTAAATAATTTTCTGGCTTACATTTTGACTTTTAATTTCATTCACGATGTTTTTAATGAATAATTTTAATTTTTATGAATGCAAGTTA-AAATAATTCTTTCATTGTGGTTTCTGA----CATGTCATGCCAATAAGGGTCTTC-TCCTCCAAGAGCACAGAAATATTTGCCAATACTGTCCTTAAAATCGGTCACAGTTTCTTTTttt s canFam1.chrUn 84664959 219 - 91062872 GGGTTTAGACTTTTAATTCTGGGACAAACACTGCAAATAATT-------TTACATTTTGACCTTTAATTTT-TTCACGATGTTTATAATGAATAATTTTAATAATTATGAACACATGTCAGAAATAATGCTTTCTTTATGGGTTCTGAATTGAATTTTGTGCCATAAAGGCCCTTTGTCTTCCACTGGCATAGAAATATTGACCAATA-------------CAGCCGCAGTTCTTTTTTT- a score=12762.0 s hg17.chr17_random 365530 326 + 2618010 ATATATGCATTTTACTTCAATTGGGGCTTCATTTTACTGAATGCCCTATTTGAAGCAAGTTTCTCAGTTAATTCTTTTCTCAAAGGGCTAAGTATGGTAGATTGCAAACATAAG---------TGGCCACATAATGCTCTCA--CCTC--------ctttgcctcctctcccaggaggagatagcgtccatctttccactccttaatctgggcttggccgtgtgacttgcactggccaatgggatattaacaagtctgatgtgcacagaggctgtagaatgt---gcacgggggcttggtctctcttgctgc-cctggagaccagctgccccacgaaggaaccagagcc s canFam1.chrUn 84665178 342 - 91062872 ATATTTCAACTTTACTCCAACTGGGGGTACATTTTGGTGAATGTCCTATTTGG-GCAAGTTTCTGAGTTTATTCCTTTCTCAAAAAGCTATGTGTGGTAGATGGCAAAAAAAAAAAAAAAATACGCCCACAAATTGCTCCCAAACCTCTCatgcacctttgccttgtctctcctgaagaga-aggggccaattttcgacccccgaacccaggctaggccatgagacttgctttggccaatgagacatta-caaatgtgatgg--actgaggctgaaacgtgttttgcccaagaatttg--ctctctggctgcatttggagaccagctaccatttgaaggagccagaacc a score=75560.0 s hg17.chr17_random 365856 625 + 2618010 aacctgctgcttcctggaggaagacagtccctctgtccctctgtctctgccaaccagttaacctgctgcttcctggagggagacagtccctcagtccctctgtctctgccaaccagttaacctgctgcttcctggaggaagacagtcactctgtctctgccaacccagttgaccgcagacatgcaggtctgctcaggtaagaccagcacagtccctgccctgtgagccaaaccaaatggtccagccacagaatcgtgagcaaataagtgatgctt-----aagtcactaagatttgg----------------gCAAAAGCTGA----GCATTTATCCCAATCCCAATACTGTTTGTC----CTTCTGTTTATCTGTCTGTCCTTCCCTGCTCATTTAAAATGCCCCCACTGCATCTAGTACATTTTTATAGGATCAGGGATCTGCTCTTGGATTAATGTTGTGTTCCCACCTCGAGGCAGCTTTGTAAGCTTCTGAGCACTTCCCAATTCCGGGTGACTTCAGGCGCTGGGAGGCCTGTGCATCAGCTGCTGCTGTCTGTAGCTGACTTCCTTCACCCCTCTGCTGTCCTCAGCTCCTTCACCCCTGGGCCTCAGGAAATCAA----TGTCATGCTGACATCACTCTAGATCTAAAA s panTro1.chrUn_random 236811579 630 - 240967748 AACCTGCTGCTTCCTGGAGGAGGACAGTCCCTCAGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAAGACAGTCCCTCTGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAAGACAGTCACTCTGTCTCTGCcaacccagttgaccgcagacatgcaggtctgctcaggtaagaccagcacagtccctgccctgtgagccaaaccaaatggtcccgccacagaatcgtgagcaaataagtgatgcttgtgttaagtcactaaggtttgC----------------GCAAAAGCTGA----GCATTTATCCCAATCCCAATACTGTTTGTC----CTTCTGTTTATCTGTCTGTCCTTCTCTGCTCATTTAAAATGACCCCACTGCATCTAGTACATTTTTATAGGATCAGGGATCTGCTCTTGGATTTATGTCGTGTTCCCACCTCGAGGCAGCTTTGTAAGCTTCTGAGCACTTCCCAATTCCGGGTGACTTCAGGCGCTGGGAGACCTGTGCATCAGCTGCTGCTGTCTGTAGCTGAGTTCCTTCACCCCTCTGCTGTCCTCAGCTCCTTCACCCCTGGGCCTCAGGAAATCAA----TGTCATGCTGACATCACTCTAGATCTAAAA s canFam1.chrUn 84665520 520 - 91062872 aggctgctgcgtgctgGCTGAACTTGG-----------------------------ATGAACCTGCTGCACGCTGGAGAGGTGCGGGTCC-----------------------------ACCTACTACACGCTGGGGGAACGTGGTCATGTTGCCCTTGTC-GTTcagctgac--cagatgcacaggggagctcaggtgaaaccactgaaatcactgctccgctgagcaggccgcactgccctcccatggagtcacaagcacatga---agccctgtgccaagccagtaagccttggagtgctttgttaaagagcaaaagctgacGTGGCAACCATTTC--TTCCGATGCTGTTTATCGAGTCTCCTGC-----------CCCTTCTCCGCAGATGGGAAATGCCCGCCCTACATCTGGTATG-TTTTACAGAATCAGGAATCTGTGTTTGGATTTCTGTTCTGGTCCTGCCC--AGGCAGCGTCATAACCCTCTGGCCACATCCAAGTTTCAGGAGCCTTCG---GTTGGGCCACGTTTGCAT------------------------------------------------------TTCACCTCTGAG-CTCAGGAAATCAAGGCTTGGACTGCAGACACCACTCCCTACCTAAAA a score=27456.0 s hg17.chr17_random 366481 309 + 2618010 GTTGGGTTCTTGgaccaggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagatcaagacgattctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgggtgtggtggcaggtgcctgtagccccagctacttgggaggctgaggcaggagaatggcttgaacctgggaggtggagcttgcagtgagccaagatcacgccactgcactccagaatgggagagagagcgagactttctcaaaaaaaaaaaaaaaaa----- s panTro1.chrUn_random 236812209 314 - 240967748 CTTGGGTTCTTGgaccaggtgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagatcaagacgatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgggtgtggtggcaggtgcctgtagccccagctactcgggaggctgaggcaggagaatggtgtgaacctgggagggggagcttgcagtgagccaagatcacgccactgcactccagactgggagagacagcgagactttctcaaaaaaaaaaaaaaaaaaaaaa a score=50158.0 s hg17.chr17_random 366790 387 + 2618010 CTTAGGTTCTTGGATGTTCGGGAAAGGGGG--TTATTATCTAGGATCCTTGAAGCACCCCCAAGGGCATCTTCTCAAAGTTGGATGTGTGCATTTTCCTGAGAGGAAAGCTTTCCCACA-TTATACAGCTTCTGAAAGGGTTGCTTGA-CCCACAGATGTGAAGCTGAGGCTGAAGGAGACTGATGTGGTTTCTCCTCAGTTTCTCTGTGCGGCACCAGGTGGCAGCAGAGGTCAGCAAGGCAAACCCGAGCCCAGGGATGCGGGGTGGGGGCAGCTACGTCCTCTCTTGAGCTACAGCAGATTCACTCT--GTTCTGTTTCATTGTTGC---------TTAGTTTG---CGTTTTGTTTCTCCAACTTTGTACCTCATCAGGAAAAGCTTTGGATCACAATTCC s panTro1.chrUn_random 236812523 389 - 240967748 CTTAGGTTCTTGGATGTTCAGGAAAGGGGGGTTCTTTATCTAGGATCCTTGAAGCACCCCCAAGGGCATCTTCTCAAAGTTAGATGTGTGCATTTTCCTGAGAGGAAAGCTTTCCCACA-TTATACAGCTTTTGAAAGGGTTACTTGA-CCCACAGATGTGAAGCTGAGGCTGAAGGAGACTGATGTGGTTTCTCCTCAGTTTCTCTGTGTGACACCAGGTGGCAGCAGAGGTCAGCAAGGCAAACCCGAGCCCAGGGATGCGGGGTGGGGGCAGGTACGTCCTCTCTTGAGCTACAGCAGATTAACTCT--GTTCTGTTTCATTGTTGT---------TTAGTTTG---CGTTTTGTTTCTCCAACTTTGTGCTTCATCCGGGAAAGCTTTGGATCACAATTCC s canFam1.chrUn 84666040 332 - 91062872 TTTAGATCCTTGGATCTTCTGAAAAGGGAGATTCTTTGCCTGAAACCCTTGGAGTA--GCCATGGGTGTTTTTGCAAACTTGGG------------------------------CCACATTTAAGCAGATTCTCAAAGGGTTACTTGACCCCAAAAATGTG-AGCTGAGGCTGATGGAAATCGATGCGGCTTCTGGTCCGAGCCTCCGTGGGGCACTGGGTGGCA-CAGA------------------------------------TGAAGGCCTGTGTGTCCTC---TGTGTTGTAGCAAATTAACTCTTGGTTCTGTTTGTCTGCCGCTGTGATTTATCAATTTGTGCTGTCCTGTCTGTTCTGCTAGAAGCTCTGTCAGGGAACCTTTTGGGCCCCAACTCT a score=115937.0 s hg17.chr17_random 367177 1299 + 2618010 CAGtgctgaagaaaaggccaaactctggaaaaaattttgaatattttgagccaaatgtgaggactacaacctgtgagaacggaaaataaatcctgggaccccagactcactaagccaaagggaaaagccaagctgggaactggcttatgcaaacctgcttcccatctggtt-cctaaataagatagctattacacaaagataaaaaagctacatccctgcctctacctccatcacatgtaaaatgtgtattcagtgaacgctgaccaaagacagaagaatgcaaccatttgcctctgatttacccacacccattttttccacttcttcccctttccccaacacccacacttctcccctttacttactgaggtccccagacaacctttgggaaaagcacggaccacagtttttcctgtggttctctgttcttttctcaggtgtgtccttaaccttgcaaacagatttcttgaaatgattgacactcaccttggttgtgttctttgatcagcgcctgtgacgcagcttcaggaggtcctgagaacgtgtgcacagtttagtcggcagaaacttagggaaacgtaagaccaccatcagtacgtaggagt---------------tgtgcattggtttggtctggaaggaggaaaattcaaagtaatggggtttacaggtcatagatagattcaaagattttctgattctcaattggttgaaagaattattatctacagacctgctatcaatagaaaggagagtctgggttaagataagagactgtgcagaccaaggttcttattatgtagatgaagtttcataggtggccacccttagagacaatagatggcaaatgtttcctgttcagacccatagaaggtgctaggctctcagccaatgtcttcaggatcagagaaagacctggaaagggaagggattctctacagaatgtaaatgtcccccacaagagacagcttggcagggccatttcaaagtatgtcaaagaaatatattttgaggt-aaaatattgatttcatggcctctgtctgtcatgtgatgctgcactggagtcaggttggaatttggtatcttattgctagagagccttgtcagtcttcagatctctgttttaatgttggttctggtcagttctgcccaaattccaaagggaggagggtacaatgaggcctgtccagcccccactcctcctcatcacggcctgaactagttcttcaggtttctctggaatccctttggcccagaggcggggtccacgcgatcggctgtggggcttagaattttattcttggtttacGG s panTro1.chrUn_random 236812912 1316 - 240967748 CAGtgctgaagaaaaggccaaactctggaaagaattttgaatattttgagccaaatgtgaggaccacaacctgtgagaatggaaaataaatcctgggaccccagactcactaagccaaagggaaaagccaagctgggaactggcttatgcaaacctgcttcccatctggttccctaaataagatagctattacacaaagacaaaaaagctacatccctgcctctacctccatcgcatgtaaaatgtgtattcagtgaatgctgaccaaagactgaagaatgcaaccatttgcctctgatttacccacacccattttttccactccttcccctttccccaatacccacacttttcccctttacttactgaggtccccagacaatctttgggaaaagcacggaccacagtttttcctgtggttctctgttcttttctcaggtgtgtccttaaccttgcaaatagatttcttgaaatgattgagactcaccttgtttgtgttctttgattAGTgcctgtgacgcagcttcaggaggtcctgagaacatgtgcacagtttagtcggcagaaacttagggaaatgtaagaccaccatcagcacataggagttctgcattggtttggtctgcattggtttggtctggaaggaggaaaattcaaagtaatggggcttacaggtcatagatagagtcaaagattttctgattgtcaattggttgaaagaattattatctacagacctgctatcaatagaaaggagagtctgggttaagataagagactgtggagaccaaggttcttattatgtagatgaagtttcataggtggccacccttagagacaatagatggcaaatgtttcctgttcagacccatagaaggtgctagactctcagccaatgtcttcaggatcagagaaagacctgaaaagggaagggattctctacagaatgtaaatgtcccccataagagacagcttggcagggccatttcaaagtatgtcaaagaaatatattttgaggtaaaaatattgacgtcacggcctctgtctgtcatgtgatgctgcacaggagtcaggttggaatttggcatcttattgctagagagccttgtcagtcttcagatctctgttttaatgttggttctggtcagttctgcccaaattccaaagggaggagggtataatgaggcctgtccagcccccactcgtcctcatcacggcctgaactagttcttcaggtttctctggaatccctttggcccagaggcggggtccacgcgattggctgtggagcttagaattttattcttggtttacaG a score=25987.0 s hg17.chr17_random 368476 186 + 2618010 CAGCTTTAGGGAGGTGCTCTGAGACCCGAAACTAGACTCGACTTTAACAGACACAGACGACCCTGAAGGTGAGACtgtctgctggtgggatgctgggcgagttgcttaatgtccctgagctgctatttgctaactgtgaagtgggATCCTGGTCCCTGACAGGCAAGATT-TTGGCACACGGAGAGC s panTro1.chrUn_random 236814228 186 - 240967748 CAGCTTTAGGGAGGTGCTCTGAGACCCGAAACTAGACTCGACTTTAACAGACACAGACGACCCTGAAGGTGAGACTGTCTGCTGGTGGGATGCTGGGCGAGTTGCTTAATGTCCCTGAGCTGCTATTTGCTAACTGTGAAGTGGGATCCTGGTCCCTGACAGGCAAGATT-GTGGCACACGGAGAGC s canFam1.chrUn 84666372 162 - 91062872 TGGCTTCAGTGAGGTGCGCCG-GGCCTGGAACAAGTCACAGTTTTAGCAG--AGAGATGACACTTGGGGTGTGCCCAGTGGCC-GCGGGATACCGGGCAAG--------TGTCCGAGAGCTGCTGTTTCCT-------------GATCATGATCCCCAACAGGCAAAAGCATTAACACACACAGTGC a score=19831.0 s hg17.chr17_random 368662 243 + 2618010 TGGTGCACGTG--------------------------------------------------------------------------------------GGCGGCTGTCCCCTAAACTCGCGTCCCTTCTTTTTAATCATACCCCACTGGCTGCACCTACACCTCCTCCCAGGCACACACCGAAGAGGATGAGCTCTGGTCCTCGAACCTCTTGTCTGCTCCCACCAGGCAGATTCTCTGTTCCCCGTGCCCAGGCAGCAGTGGTGGACACCAGCATCCCGGAATGGTGTAGAAAGGCTGACCCCATCATAGCCAAAGCCTGGGGTTTCCT s panTro1.chrUn_random 236814414 329 - 240967748 TGGTGCACGTGGGCAACTGTCCCCTAAACTCGGGTCTCTAGTGGGATCCTGGTCCCTGACAGGCAAGATTGTGGCACACGGAGAGCTGGTGCACGTAGGCGGCTGTCCCCTAAACTCGCGTCCCTTCTTTTTAATCATACCCCACTGGCTGCACCTGCACCTCCTCCCAGGCACACACCGAAGAGGATGAGCTCTGGTCCTCGAACCTCTTGTCTGCTCCCACCAGGCAGAGTCTCTGTTCCCCGTGCCCAGGCAGCAGTGGTGGACACCAGCATCCCGGAATGGTGTAGAAAGGCTGACCCCATCATAGCCAAAGCCTGAGGTCTCCT a score=4489.0 s hg17.chr17_random 368905 35 + 2618010 GTTTccctcctcctcctccccactcctcccccgac s panTro1.chrUn_random 236814743 35 - 240967748 GTTTccctcctcctcctccccactcctcccccaac s mm5.chr11 162789 35 - 121648857 GTGCCCCTCCTCGCACACTTCTCCCTGTCCCAGTT a score=30468.0 s hg17.chr17_random 368940 144 + 2618010 ccctccctcct-ccacttacccccatcccctGCATAATGGGTTTCTAGCTGCCTCCTCTGCCTGCCCAAACAGGACAGGCAGGAAAAA-------CTGGCTTGGTTCTGAGTAGGCAGTTTCAG----GGCCTTA-AGGAGAAATTCATCGGCCATT s panTro1.chrUn_random 236814778 144 - 240967748 ccctccctcct-ccacttacccccatcccctGCATAATGGGTTTCTAGCTGCCTCCTCTGGCTGCCCAAACAGGACAGGCAGGAAAAA-------CTGGCTTGGTTCTGAGTAGGCAGTTTCAG----GGCCTTA-AGGAGAAATTCATCGGCCATT s mm5.chr11 162824 147 - 121648857 CTTTCCTTCATGCCACTTTCCC---TCTCCTACCTGTTGGGTCTCTGACTTCATCCCCTGGCTGGTACAACAGGACAGGCATGGAAAA-------CTGGCCCGGTTACAATGAGGCAGTTTCAGCTTCTGCATTGCAGGAGAAATTCCCTGGCCATC s canFam1.chrUn 84668154 135 - 91062872 CCCTCCTTCCT-TTTGGCCCTCCCCGCTCTGATATATCGAGTTTCTGGCTGCCTCCT-GGGCCACCCAAGCGGGACAAGCAGGAAAAACACAATCCCAGCTTTGCTTCT-------------------GGCTACG-GAGGGGGGTTCGCAGGCCCTT a score=0.0 s hg17.chr17_random 369084 13 + 2618010 AATCAGGACCTTC a score=1528.0 s hg17.chr17_random 369084 11 + 2618010 AATCAGGACCT s panTro1.chrUn_random 236814922 11 - 240967748 AATCAGGGCCT s mm5.chr11 162971 11 - 121648857 CACCAGCACTT a score=-339.0 s hg17.chr17_random 369095 2 + 2618010 TC s panTro1.chrUn_random 236814933 1 - 240967748 T- a score=17017.0 s hg17.chr17_random 369097 197 + 2618010 CCTCCGGGGAGTTGGCAGCTTCAGGTGTGGTCTCTGGAAACAAGCCCCACAAATTATTATCAGAGAACCTCTGTCTTGGGTGGCAGAGGCAGCCTGGTTGGGGTGGGCACCCCGGCTACGGAAAGGAGCAGCTCCCTCCACTTTCCTTCCGGCTGCATGTGGAGAGGCTCGAGCGGGGCACAGTCCATGACGAGATA- s panTro1.chrUn_random 236814934 197 - 240967748 CCTCCGGGGAGTTGGCAGCTTCAGGTGTGGTCTCTGGAAACAATCCCCATAAATTATTATCAGAGAACCTCTGTCTTGGGTGGCAGAGGCAGCCTGGTTGGGGTGGGCACCCCGGCTACGGAAAGGAGCAGCTCCCTCCACTTTCCTTCGGGCTGCATGTGGAGAGGCTCGAGCGGGGCACAGTCCATGACGAGATA- s canFam1.chrUn 84668289 101 - 91062872 CCTCTG----------------AGGTGTGGACTCCAGGACTTGTCCCC-------------------CACCTGTCACGTGAG--------AGCCTGTCTG---------CCCAGG---------------------------------------------GGAAGGATTCCAGCAGGACACAGTCCACGAAGGGCAAA a score=14846.0 s hg17.chr17_random 369294 64 + 2618010 TTAATCTTGTGTTTGGATTTTTCCTTTTTTTTAATAAAGAAGAA-AGATAAGGTATTGTGCTCAT s panTro1.chrUn_random 236815131 63 - 240967748 TTAATCTTGTGGTTGGATTTTTCC-TTTTTTTAATAAAGAAGAA-AGATAAGGTATTGTGCTCAT s mm5.chr11 163104 56 - 121648857 TTAATTTGTTGTTTGCATTCTTTA-TTTT-------AAGAAAAA-AAGTTAAGTATTGTGCTCAT s canFam1.chrUn 84668390 59 - 91062872 TTAATTTGTTGTTTGGGTT------TTCTGTTAAGAGAGGAGAAGAGATAAAGCAGAGCACTCAT a score=80619.0 s hg17.chr17_random 369358 749 + 2618010 CTTGTAAAAATCAAGCACACAGTACATCAGTCTATTCTACAAAGAAACACAACCTAA----GCAAAGATTTGTTATAGGCAGTGGCCAGTTACAGAAACAGTAGGACTTGCATTAGGGGTTTTGTATGGGAAAGAAAGGGAGTCAGACACAGACGTGATGGTGGAGACAGGGGCAGGAAGACAGAGCAGCTGACACTTCCAGAAATAGCTGGCCAGAGGCCAGCAGGAGGGAAACACCAACCCGAGGAAAGAGAGACGGGGATTGGGAGAGAAATTCAGAAGAGACTGAGGcacgcacacagacagacgcacccacccacacacagatacggattcaaagagacacgcacacTCTGAGTTTCTGAG--------AGTAAGCCACTGTCAGTTCCTGGGGTGAGCCACCAGCC---ACATGGACACAATTTCCTCTTTTTGGTAAG-TCTTTGACCTGTCTGAACCCCCTACTTAATTACCTATAAAATGAGTCATTGCAAGGAtgacaaagacgctctccttgaccaaactccactcaggctcctttgagccttctccttgatgaagcctcatccttggcctgctgagctcagtgctagcaaggaatgctgctaaggtccttagtgagaatctt-ccccacccntg--------------ctaactaaccaagctcctttcaacaacttttcatcacctccctca----ccctgctcatt-----ggctatccccacttgtctctgttgtattgagagttgaattcagtctctctctctcctcttgcaa s panTro1.chrUn_random 236815194 749 - 240967748 CTTGTAAAAATCAAGCACACAGAACATCAGTCTATTCTACAAAGAAACACAACCTAA----GCAAAGATTTGTTATAGGCAGTGGCCAGTTACAGAAACAGTAGGACTTGCATTGGGGGTTTTGTATGGGAAAGAAAGGGAGTCAGACACAGACGTGATGGTGGAGACAGGGGCAGGAAGACAGAACAGCTGACACTTCCAGAAATAGCTGGCCAGAGGCCAGCAGGAGGGAAACACCGACCCGAGGAAAGAGAGACGGGGATTGGGAGAGAAATTCAGAAGAGACTGAGGcacgcacacagacagacacacccacccacacacagatacggattcaaagagacacgcacacTCTGAGTTTCTAAG--------AGTAAGCCACTGTCAGTTCCTGGTGTGAGCCACCAGCC---ACATGGACACAATTTCCTC-TTTTGGTAAGTTCTTTGACCTGTCGGAACCCCCTACTTAATTACCTATAAAATGAGTCATTGCAAGGAtgacaaagacgctctccttgaccaaactccactcaggctcctttgagccttctccttgatgaagcctcatccttggcctgctgagctcagtgctagcaaggaatgctgctaaggtccttagtgagaatctt-ccccacccttg--------------ctaactaaccaagttcctttcagcaacttttcatcacctccctca----ccctgctcatt-----ggctatccccacttgtctctgttgtattgagagttgaattcagtctctctctctcctcttgcaa s mm5.chr11 163160 637 - 121648857 CTAT--AAAATTGTGCACATAGAACACAAATGTGTCCC------AACTACAACCAAACCTGGCACAGACGTGCTGAGAGCTGTGACCAGTCATGGCA------------------------------GAGTAGGAAGAGGAGTCAGAC-----CGTG-CAGTTGAGGGAGAGTCTGAACAATCACATGGCCAACAGAGCCAATGCTAGTGGACAGGAAACTCACAAGAGAGA-------------------TGGGAAGGGGGTTGAGAAGGAAGAGGAGGAGTCACAGTGG-------------AAGTGAATATATGGCCACAGAAGCCAGGATT-----------------TCTGGGTTTCTGAGTTTGCAGTAGTGAGTTGTGATCA----CTGATGT--GCCTTCTGCTGCAACATGGACAGTATTTCCCCTTTTCTGCAAG-TCTTTGTCTGATCTGAACCACCTACTTAATTGCCTATAAGA-AAGTCACTGGCAGAA-GACAAA----CCCTTCCTG--CCAGTCCTGCCCAAGCTTTTAACTGCCCTC-----------------TTCTGAGCCTGCGAAGCCT------------GAATGCCACTTGGATGCCTA-TGAAGTTCTTATCTCATCAATAGGCAACTGGGTTGCCTTACTAACCCCGTTCTTTTTTGTAATTTTCTATCCTTTCTTTCAACTTTCCTGGTCAGTTGTGAAGCCACCCTTAACTATATATATTGTGTTCAG-------------TTTTCTCT-TCCTATTGCAA a score=26481.0 s hg17.chr17_random 370107 294 + 2618010 tag----ttttttttttttttaagagacagggccttgctctgtcaaccaggctggagtgcagtagcacaatcacagctcagagcagcctcaaactcctaggctcaaaggatcctcccacctcagcctcctgcgtagttgggactacaggtgtatgccactgcaccaaataattttttaaaacattgtagagatggggtcctgctttgttgcccaggctggttttgaagtcctggcttcaagtgatcctcccacctgggcctccaaaggtactgggattacaggcatgagccaACCTat s panTro1.chrUn_random 236815943 298 - 240967748 tagtgttttttttttttttttaagaggcagggccttgctctgtcaaccaggctggagtgcagtagcacagtcacagctcacagcagcctcaaactcctaggctcaaaggatcctcccacctcagcctcctgcgtagttgggactacaggtgtgtgccactgcaccaaataattttttaaaacattgtagagatggggtcctgctttgttgcccaggctggttttgaagtcctggcttccagtgatcctcccacttgggcctccaaaggtgctgggattacaggcatgagccaacctat a score=188843.0 s hg17.chr17_random 370410 2118 + 2618010 aatcagcctggtaatcacgtaaaacagacacatagaccagtggaacagaatagagaacccagatataaatccacacatttacagccagctcatcttcagcaaaggcaccaacaacatacgagcgaaaggacggtctcttccataagtggtgcaggggaaactagataaagatatgcagaagaatgaaactagacccgtctctcttaccatacacagaaatcaaatcagaatggattaaaggtaaaactgagacctgaaagtataaaactactggaagaaaacattagggaagtgctccaggacattgttctcagcaaagactttttcagtagggccccaaaagcacaggcaaccaaagcaaaaacagacaagtgaaatcacaccaagctaagaaccctctgcagaccaaaggaaaaagtcaacaaactgaagagacaacccacagaatgggagaaaatacttgcaagctacccacctgacaagggattcataaccaggagctcaaacaatagcaaacaattaatcgaattttaaaatgggcaagagacctgagtagacatttctcaaaagaagatgtacaaatggccagcaggtacatgaaaaaatgctcaacatcactaatcatcagagaaacgcaaataaaaaactgcaatgaggtcttctctcacctcagttaaaatggctttcgtcaaaaacgcagggaataagggatgctggcgaggatgtggagaaagggggaccctcacacactgttgtgggaacgttgattagtacaaccactatggaaaacagatggaggctcctcaaaaaaccaaaaggggccgggcatggtggctcacgcctgtggtcccagcactttgggaggccaaagcagggggatcacaaggtcaggagtttgagaccagcctggccaacatgatgaaaccccatctctactaaaaatataaaaaattagccaggcgtggtggtgcgaccctgtaatcccagctacttgggagactgaggcaggagaatcactggaacacaggaggtggagattgcggtgagcggagagcgcaccattgcactccagcctgggtgacagagcaagactcctccttaaaaaataaataaataaataaaaGTTggccgggcgcggtgtctcacacctgtaatcccagcactttgggaggtggaggcgggcggatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaatcccgtctctactaaaatacaaaaaattagctgggcgtggtggtgcgcacctataaatcccagctactcgggaggctgaggcaagggaatcgcttaaacacaggaacccgggaggcagaggttgcagtgagccaagatcacaccactgcacaccagcctagtgacagagcaagactccatctcaaaaaacaaacaaa--caaaaaaaaaaacacctaaaagtaaaactgctgtatgatccagtaatttcactaactgggcctatagtcaaaagaaacaaaatcaa-tatatcgtaaagacatctgcactctcatgtttactgcgggactactcacaatcgccaaaatacggaatcagcctctgagttcatcagcggatgatggataaacagaacgtggtgtgtatacacagtggaatattattcagccatacagaggaacgacagcctgttatttgtacaagatggaactagggatcattatgttaagtgaaataagccaagcacagaaagacaaacattgaatgttctctcccacctactaaaaaagtagctctcgtgaagacagagggtagacgcgtggttaccagaggtggggaaatgtagcggggagacggggagaaagagaagttgattgaagggtacaaatacgtggtttgatagaaggaataagacctagggttacatagatcatagttggcaattgcctactgtatatttcaaaatggctagaagagaagaatcggaacggttctagcataaagcaaaaacaaatatttaaggcgatagatattccaagtaggctgatttgattttcacaattatatgaatgcattaaactatcacatgtaccctgaaactatgtacatctattatgcatcagtgaaaaaga s panTro1.chrUn_random 236817580 2112 - 240967748 aatcagcctgctaatcgggtaaagcagacacatagaccagtggaacagaatagagaacccagatataaatccacacatttacagccagctcatcttcaacaaaggcaccaacaatatacgggggaaaggacagtctcttccataagtggtgcaggggaaactacataaagatatgcagaagaatgaaagtagacccgtctctcttaccgtacacagaaatcaaaccaaaatggattaaaggtaaaactgagacctgaaactataaaactactggaagaaaacattagggaagtgctccaggacattgttctcagcaaagactttttcagtaggaccccaaaagcacaggcaaccgaagcaaaaacagacaagtgaaatcacaccaagctaagaaccctctgcagatcaaaggaaaaagtcaacaaactgaagagacaacccacagaatgggagaaaatacttgcaagctacccacctgacaagggattcataaccaggagctcaaacaatagcaaacaattaatcgcattttaaaatgggcaagagacctgagtagacatttctcaaaagaagatgcacaaatggccagcaggtatatgaaaaaatgctcaacatcactaatcatcagagaaacgcaaataaaacactgcgatgaggtcttctctcacctcagttaaaatggctttcgtcaaaaaggcagggaagaagggatgccggcgaggatgtggagaaagggggaccctcacacactgttgtgggaacgttgattagtacaaccactgtggaaaacagatggaggctcctcaaaaaactaaaaggggccgggcccggtggctcacgcctgtggtcccagcactttgggaggccaaagcagggggatcacaaggtcaggagtttgagaccagcctggccaacatgatgaaaccccatctctactaaaaatataaaaaattagccgggcgtggtggtgcgacccggtaatcccagctacttgggagactgaggcaggagaatcactggaacccaggaggtggagattgcggtgagcggagagcgcaccattgcactccagcctgggtgacagagcaagactccgccttaaaaaataaataaataaaTGAAAGTTggccgggcgcggtgtctcacacctgtaatcccagcactttgggaggtggaggcgggcggatcacaaggtcaggagatcgagaccatcctggccaacatggtgaaatcccgtctctactaaaatacaaaaaattagctgggcgtggtggtgcgcacctataaatcccagctactcgggaggctgaggcaggggaatcgcttaaacacaggaacccgggaggcagaggttgcagtgagccaagatcacaccactgcacaccagcctagcgacagagcaagactccatctcaaaaaa--aacaaaaacaaaaaaaaaaacacctaaaagtaaaactgctgtatgatccagtaatttcactaactgggcatatagtcaaaagaaacaaagtcaaatatatcgtaaagacatctgcactctcatgtttactgcgggactactcacaatcgccgaaatacggaatcagcctctaagttcatcagcggatgatggataaacagaacgtggtgtgtatacacagtggaatattattcagccatacagaggaatgacagcctgttatttgtacaagatggaactagggatcattaccttcagtgaaataagccaagcacagaaagacaaacattgaatgttctcacccacctactaaaaaagtagctctcgtgaagatagagggtagacgcgtggttaccagaggctgggaaatgtagcggggagagggggagaaagagaaattgattaaagggtacaaatacatggtttgatagaaggaataagacctagtgttacatagatcatagttgacagttgcctactgtatatttcaaaatagctagaagagaagaatcggaacagttctagcataaagcaaaaacaaatatttaaggcgatagatattccaagtaggctgatttgatttttacaattatatgaatgcattaaactatcacatgtaccctgaaactatgtacatctattatgcatcaat-------a a score=11978.0 s hg17.chr17_random 372528 67 + 2618010 aaaAAGAAACAAGAACTTAGATTTTAAACTCAGCACTCTCCTAGTGGGCTCCTTAAAAATATTTTTG s panTro1.chrUn_random 236819692 67 - 240967748 aaaaagaaaCAAGAACTTAGATTTTAAACTCAGCACTCTCCTAGTGGGCTCCTTAAAAATATTTTTG s mm5.chr11 165788 61 - 121648857 AATAAGAAATAA------AGATTTTTTAATTAGCATTCTCCTAGCAGGCTCTTAGGAAATATTTGTG a score=26864.0 s hg17.chr17_random 372595 291 + 2618010 TttgggaggacaaagtaggaggattccttgagcccgggagcttgaggctgcagtgagatagtgccactgcactccagcctgagcgacagagagatacactggctctaaatataaataatataaatatatatttatggaataaataaatgaataaaatatCTTTGCATGCTGGTGAGCCCAGGGTACAGTCTGCCCTTGGCAGCTCGGTGACTCAGCCAAGGCGGCTGAACAATCCTCGCCCACTAGACAGTGGAGGTCGCCCTCCAGAGGACCTTATCAGATGTACGTGCA s panTro1.chrUn_random 236819759 291 - 240967748 TttgggaggacaaagtaggaggattccttgagcccgggagcttgaggctgcagtgagatcgtgccactgcactccagcctgagcgacagagaggtacactggctctaaatataaataatataaatatatatttatggaataaataaatgaataaaatatCTTTGCATGCTGGTGAGCCCAGGGTACAGTCTGCCCTTGGCAGCTCGGTGACACAGCCAAGGCGGCTGAACAATCCTCGCCCACTAGACAGTGGAGGTCACCCTCCAGAGGACCGTATCAGATGTACGTGCA a score=43962.0 s hg17.chr17_random 372886 434 + 2618010 AAGCAGTTTTCAAGACAGTTTTCTATTCAGAGTGTGGTTTAGCCGTTCAGGGAGAGAGATCACAAAGGAAAACCACCTTTAGGAAAGCAGGTGAGAAAGGTGTAAGTTCCCAGGCTTGGGGGTCCTGGCCCAGCCTAGCTGTGGGCAACCCCAGGAAGGCTGAGCCCCGCAGGCTGTATGGACAAAGCATCTCGCTTTCCACACTGGCCACAGGTCTATCCCTGGCAGTAAACAGGTCACAGGTGGGCAGCAGGTCTAACACCTGTAGCGAAAGAACGCAGGAGAGGAACTGAGGCTCTGCTACCAGCAGATGCTCCAAGCACATCCCACGGGGAGGACCATGCACAACTCAGCTGGCCACAACCAGGAAAAGGGTGTCCAGGGCCTCAGAGCTGCTTCAGTGGGGCCATTTCCAGGCTCCCAAG-CAGTAATGT-------- s panTro1.chrUn_random 236820050 434 - 240967748 AAGCAGTTTTCCAGACAGTTTTCTGTTCAGAGTGTGGTTTAGCCGTTCAGGGAGAGAGATCACAAAGGAAAACTACCTTTAGGAAAGCAGGCGAGAAAGGTGTAAGTTCCCAGGCTTGGGGGTCCTGGCCCAGCCTAGCTGTGGGCAACCCCGGGAAGGCTGAGCCCCACAGGCTGTATGGACAAAGCATCTCGCTTTCCACACTGGTCACAGGTCTATCCCTGGCAGTAAACAGGTCACAGGTGGGCAGCAGGTCTAACACCTGTAGCGAAAGAACGCAGGAGAGGAACTGAGGCTCTGCTACCAGCAGATGCTCCAAGCACATCCCACGGGGAGGACCATGCACAACTCAGCTGGCCACAACCAGGAAAAGGGTGCCCAGGGCCTCAGAGCTGCTTCAGTGGGGCCATTTCCAGGCTCCCAAG-CAGTCAGGT-------- s canFam1.chrUn 84670400 238 - 91062872 AAGCAGCTTTCAAAGCAGTTTTCCGTTCAGAGTGTGGTTTAACCGTTGAGGGAGAGAGTT--CAAAGGAAAACCGTGGTGAGG-AAGCGGGTGAGTAGGGCACAG-----CAGGTCTGGGCACCCTTGCATA-------------CAGCCTCGG---------------------GTGTGG---------------------------------------CATGGTGG----------------GGGCAGCAGGTGTCCCCC----------------------------------------------------------CGCATTCCACGGGGAGGA------------CAGCGGG-------------------------------------GCGCCTGTGGGA-CAGTTTCAGGCTCCCAGGTCAGCAACGAGCCGGGCT a score=42814.0 s hg17.chr17_random 373320 298 + 2618010 --GGGTGC--CCTCTCAAGAACAGAAGCGGAACAGCCTAACGCTAATGTTTNGGAAGAAGAGAACAGTGATCCCCCTGGTTACCTCCCATCTCTCTCTGCAGTTCTCATGCATCTGNGCACACACGC----TCACACACACATATGTCCATCAATCCACTCACAATGTTTGACTTAAAGCAGAAACCATATAAAGGGCAGGATAAGGAGAAAAGACGAAAGGAACTGAAAAGATGCAAACAGCCACT--AACACGC---CAATTTGC-ACNTTGCACAGGGCCTGGGAAGT---AATG---ACACGGCTTCTCGTTAT s panTro1.chrUn_random 236820484 298 - 240967748 --GGGTGC--CCTCTCCAGAACAGAAGCGGAACAGCCTAACGTTAATGTTTGGGAAGAAGAGAACAGTGATCCCCCTGGTTACCTCCCATCTCTCTCTGCAGTTCTCGTGCATCTGTGCACACACGC----TCACACACACATACGTCCACCAATCCACTCACAATGTTTGACTTAAAGCAGAAACCATATAAAGGGCAGGATAAGGAGAAAAGACAAAAGGAATTGAAAAAATGCAAACAGCCACT--AACACGC---CGATTTGC-ACCTTGCACAGGGCCTGGGAAGT---AACG---ACACGGCTTCTCGTTAT s mm5.chr11 166054 278 - 121648857 --GGGCAT--CTGCCCAAGAACA-AAGCAAAATAGGTCA----CAGTGTTTGAGAGGG--------------TCCCTACCTTATCCCAGTTGCTTTCTGTAATGCACACATATATGTGGGCATGCTCAAATCCATCCATCTATATGTCCATCCAACCAATCTCAATGTTCAATTTAAAGCAGTGACCTTATAAATAGCAAAGTAAGGA-AAAAGATGGATGTAACTGTAAA-----ACACAACCACTGAAATACCC---CAGTGAGCTACTGTCCACACAGCCTGGTAGGT---ACTGGGTACAC-----TTCACTGT s canFam1.chrUn 84670638 282 - 91062872 GAAGGCACAGCCTCCCAAGGACGGAAGCACGGCAGCCCACAGATAATGTTCGGGCAGGAAAGGACGG----------GGCCGCCCTCGCCCGCTCTCCCCATCTCAGGCCCTGCTGTCGACAGGTGC--------ACACACGCAAGCCCAATGATACGCTCCA---GGCTGATGTGACGCAGC----------AGTACAGGCACAGGAGAGAAGAGACAGGGGACATAAAAGATGCACACAACCACC--AACACACACTCAACAGGGCACTCCCCATGGGGCCTGGCGAGTCCCCATG---CCACAGCCCTGCGCAAT a score=7767.0 s hg17.chr17_random 373618 69 + 2618010 GCATCAATGATCTCATGTTTTCATTTTAACAAAC--------ACCCTAATACAAAAATAGGCTTTATAGGGAGGAGA s panTro1.chrUn_random 236820782 69 - 240967748 GCATCCACGATCTCATGTTTTCATTTTAACAAAC--------ACCCTAATACAAAAATATGTTTTGTAGGGAGGAGA s mm5.chr11 166332 75 - 121648857 GAGGCAATGTTCTGGTCTTTTCATTGTGATGAACCTGGACAAAGATAACTACAAAGATAA--TCTAAAAAAAGGAGA a score=2447.0 s hg17.chr17_random 373687 26 + 2618010 GAAAATATGTTTTATAGGGAGGAGAG s panTro1.chrUn_random 236820851 26 - 240967748 GAAAATATGTTTTATAGGGAGGAGAG a score=34526.0 s hg17.chr17_random 373713 275 + 2618010 AAAAGCCATTNTGAAGA--GCTGGATA-GGTTGCCTNTG-GCCCACATGGAGTCAGCCCCCTGCCCACGCCACC----------AGGCTCACGTTCAGGNCCNTGGCTGGAGAAACNTGA-GCTGCAGGACCCGCTGCCCACCAATGCAGAAGAGAAGGCAG-TATGCTTTTNGCATTGGGTGGAACAAAAAC--AGAAGAAATGGGAATTTGGTGAGAAATAAGGGAGGTGGTCCTCAGAATCTGCAGAGcagtggcttccaaactct-gtgatgcaaccccagccagaaaaa s panTro1.chrUn_random 236820877 276 - 240967748 AAAAGCCATTCTGAAGA--GTTGGATA-GGTTGCCTTTG-GCCCACCTGGAGTCAGCCCCCTGCCCACGCCACC----------AGGCTCAGGTTCAGGGCCCTGGCTGGAGAAACCTGA-GCAGCAGGACCCACTGCCCACCAATGAAGAAGAGAAGGCAG-TATGCTTTTTGCAGTGGGTGGAACAAAAAC--AGAAGAAATGGGAATTTGGTGAGAAATAAGGGAGGTGGTCCTCAGAATCTGCAGAGCAGTGGCTTCCAAACTGTCGTGATGCAACCCCAGCCAGAAAAA s canFam1.chrUn 84671746 275 - 91062872 AAAAGCTCTTCTGTAGACTGTTCGATGCGTTTGCCCTTACCCCCACCTGGAGGCAGCCCCCTGCTCACGCCCGCCCAGGGCAGAGGGCTC----CCGAGGCCCCGGCTGGAGAAACTGCACACAGCACGGCTCACTGCCAGC----------AAGATGTCAGCTCTGCTTCTCG----GAGCAGAACAAGAACTGAGAAGAGGCAGGACCTGGGTGA-ACATGAGGGAAACAGGAACCTGGAGGCGCAGAGCAGCGGCTTCCACACACTGGGACCACGACCATGCTCGGAAGGA a score=1265.0 s hg17.chr17_random 373988 46 + 2618010 cactttacatcatggctgagggcacatacgtgcacgcacatatgca s canFam1.chrUn 84672021 45 - 91062872 CGTCTTACATGAGGGAGGAAGGCCCAGGCACGCACA-ACACAGGCA a score=93583.0 s hg17.chr17_random 374068 1073 + 2618010 AATTCCTAAATAACATCCTGCCCACATGGGAATTCTGCCCTAGCTGATGGCTTCTCCGA-GGCCTAGGCCCAAATCCACACCTGCTGTTTAGCCCAGAGCCAAGCCTAGGAGTGTAGGGTCCCCTATGCATGGGTGTCCAACCCCATCCCTGTCCGGAATAGCACGGGTGCTTCTCGGTGCCACAAATGTTGGTGGCGGCTGGGGAGGAGTGGTTCCTCCAAGGCTCCATGCCTGCCTCCACCACTGAGGCCAGCACGGTGGGACTGGGCTAGGGAGACAGGCAGGCTGGCCTACCCACTGAAGGAGCCAGTCTGCTTCCACCTAGTCAGCAGCTCCAGGGAGCGCATCTCCCTCCAGGAAGGGCAGGAGGCCAAGAGGAGCTGGAAAGGTGGGCATTTGATatcatgaggtataaagagagctcctaggggtcccagacatcaactaataaaagcacctcagaagttcatagatggggaaatagctgtgtgaatataccgtgttatccaagtcatgcggagaggaagggctcgaacccatggctactactccccnacccccgtcctcctcctcctcTTTCCATTAAGTTTTTGTGATTATGAAAGTAGCTTACATNTGGTGTAGAAAATATGGNACATATGGAAAAATTTAAAAAGACTCAGGCAAAGGGTCATGTGTCACTTCTTATGACCAGAGGCCGTTGCNNNTNNTNNANNNNTGGAAATGTTTTCTTCCNAATTGTGCTGCACGTTTTTGGCGAGAGCATGGGGCTGTGCGGCGTCCCCTCCCTGGCGCCCACCTGTGCCNTGCACACTGGCCTGCACTGTGGTGATCTCGCTTGGCCCCCACCTGATTCCCGACATACAGCAGAGGAAGCTTAGGCTCAGGTGGAACAGCCTCAACTGATTCTGTCCCTGAACTTCCGTACACAGCCCTGGAGTCGTCTTAGAGccatgatttatttaactgttctttcattttacagaacataaaatgtattgtttccaacttttttcctatggtaaataatactaaagtaaatatctctgtgcatgaatctttttgtatatgtt s panTro1.chrUn_random 236821258 1068 - 240967748 AATTCCTAA-TAACATCCTGCCCACATGGGAATTCTGCCCTAGCTGATGGC-TCTTCGAGGGCCTAGGCCAAAATCCACACATGCTGTTTAGCCCAGAGCCAAACCTGGGGGTGTAGGGTCCCCTATGCATGGGTGTCCAACCCCATCCCTGTCCAGAATAGCACGGGTGCTTCTCAGTGCCACAAATGTTGGTGGCGGCTGGGGAGGAGTGGTTCCTCCAGGGCTCCACGCCTGCCTCCACCACTGAGGCCAGCACGGTGGGACTGGGCTAGGGAGACAGGCAGGCTGGCCTACCCACTGAAGGAGCCAGTCTGCTTCCACCTAGTCAGCAGCTCCAGGGAGCGCATCTCCCTCCAGGAAGGGCAGGAGGCCAAAAGGAGCTGGAAAGGTGGGCATTTGATATCATGAGGTATAAAGAGAGCTCCTAGGGGTCCCAGACATCAACTAATAAAAGCACCTCAGAAGTTCATAGATGGGGAAACGGCTGTGTGAATATACTGTGTTATCCAAGTCATGCGGAGAGGAAGGGCTCGAACCCATGGCTACTACTCCCC-ACCCCTGTCCTCCTCCTCCTCTTTCCATTAAGTTTTTGTGATTATGAAAGTAGCTTACGTTTGGTGTAGAAAATATGGAACATATGGAAAAATTTAAAAAGACTCAGGCAAAGGGTCATGTGTCA---CTTATGACCGGAGGCCGTTGCTCTTTATTAACAGATGGAAATGTTTTCTTCCAAATTGTTCTGCACGTTTTTGGCGAGAGCATGGGGCTGTGCGGCGTCCCCTCCCTGGTGCCCACCTGTGCCCTGCACACTGGCCTGCACTGTGGTGATCTCGCTTGGCCCCCACCTCATTCCCGACATACAGCAGAGGAAGCTTAGGCTCAGGTGGAACAGCCTCAACTGATTCTGTCCCTGAACTTCCGTACACAGCCCTGGAGTTGTCTTAGAGccatgatttatttaactgttctttcattttacagaacataaaatgtattgtttccaacttttttcctatggtaaataatactaaagtaaatatatctgtgcatgaatctttttgtatatGTT a score=67377.0 s hg17.chr17_random 375309 748 + 2618010 gaaagacacaatcccaagcaccataatgtggaatgttgaaatccctaaagatcaaaatccctcaagtctaaaatcccTgatatttcagatgaccacagctacagggctaggtgcacacaattagtaaccgtagcgatatacgtgtacacgtttctcttttgacttatttctttatggtctgtcttcttataactgctacacccatgccgccgtcgttagttacctcagtgtttatgcaaaaatacctgttatcattgcctattttattgtgtaaagtggcctatgaaatgttctgttgtgtttttatgtttctcaaatacataccttttaaaaatgtaaataaataacatcgacattattttttccagatttatacttttgggattttgatctttgggatttcaggatgaggtattcggagctgtgtctttggggatgatgaccggctccTGTGCCGTCCCACCCATCTTTGCGGCATGGGACCTTGGCATCCCCACCTCGGCCCTGGCTCTACCTGACCTCACAATGGACCAGGCCAACTCAGTCAATGTggagtcagcatcaggtagacctggggctgaaactcaacactggtgttcaccttgacctagcttctctgagcctcaagttcctcatctggacaccagtggggttagGGGCTGAGGCACATCAGCACTAAGCAGGAGAGCTCATCGTTGCCATGCATCAGCTGTGGCTCTAGAGCCGAGACGCTCCCAGCCGTGTAGGC s panTro1.chrUn_random 236822426 748 - 240967748 gaaagacacagtcccaaacaccataatctcgaatgttgaaatccctaaagatcaaaatccctaaagtctaaaatcccTgatatgtcagatgaccacagctatagggctaggtgcacacaattagtaactgtagtgatatacgtgtacatgtttctcttttgacttatttctttatggtctgtcttcttataactgctacacccatgccgccgtcattagttacctcagtgtttatgcaaaaatacctgttattgttgcctattttattgtgtaaagtggcctatgaaatgttctgttgtgtttttatgtttctcaaatacataccttttaaaaatgtaaataaataacatcgacattattttttccagatttatacttttgggattttgatctttggcatttcaggatgaggtattcggagctgtgtctttggggatgatgactggctccTGTGCCATCCCACCCATCTTTGCGGCATGGGACCTTGGCATCCCCGCCTCGACCCTGGCTCTACCTGCCCTCACAACGGACCAGGCCAACTCAGTCAATGTGGAGGCAGCAtcaggtagacctggggctgaaactcaacactggtgttcaccttgacctagcttctctgagcttcaaggtcctcatccgGACACCAGTGGGGTTAGGGGCTGAGGCACATCAGCACTAAGCAGGAGAGCTCATCGTTGCCATGCATCAGCTGTGGCTCTAGAGCCGAGACGCTCCCAGCCGTGTAGGC a score=6782.0 s hg17.chr17_random 376057 102 + 2618010 TTCCCAGCAGTGCAGGCCCCTCTCTAGAGCTGAGATGCTCCCGGCAGTGCAGGCCCCTCTCTAGAGCCGAGACGCTCCCAGCCGTGTAGG-CCCCTCTAGAGC s panTro1.chrUn_random 236823174 59 - 240967748 -----------------CCCTCTCTAGAGCCGAGACGCTCCCGGCAGTGCAGGCTCCTCTCTAGAGCCGAGACGCT--------------------------- s mm5.chr9 2666156 103 - 124177049 TTCCTGCCAGCCCAGGTCCCCCTTTAGAGCATTGTCATTCCTGCCAGCCCAGGTCCCCCTTTAGAGCACTGTCATTCCTGCCAGCCCAGGTCTCCCTTAGAGC a score=3012.0 s hg17.chr17_random 376133 26 + 2618010 CCCAGCCGTGTAGG--CCCCTCTAGAGC s panTro1.chrUn_random 236823196 28 - 240967748 CCCGGCAGTGCAGGCTCCTCTCTAGAGC s mm5.chr9 2666232 27 - 124177049 CCTGCCAGCCCAGG-TCTCCCTTAGAGC a score=651.0 s hg17.chr17_random 376159 8 + 2618010 CAAGACGC s panTro1.chrUn_random 236823224 8 - 240967748 CGAGACGC a score=27660.0 s hg17.chr17_random 376159 310 + 2618010 CAAGACGCTGCAGGGTTAATCAGGGCTGCCCAACAGTCCATCCCCTCTTCTCTCtctgaaatcaagaaacattccgaattccaaaatgcaactggtcccaagtgtttcagttaagggaCTGTGGCCCTGTGTAATGCCAGGCAGTGACAAGGACTGTGACTGGGAGCCATCGTAAGTCGATGCTGAATGCCAAAGGGAGGAAAGGAGGCAGCGGTCCTTAAAGGGCCCACTGAGCTCAGATCCCACGCCTGAGCCTCCGCCTCTCCGTGCAGTCCCGGAGATGGCACACAGCCTTCTGCACGAACCGCAA s panTro1.chrUn_random 236823233 301 - 240967748 ---------GCAGGGTTAATCAGGGCTGCCCAACAGTCCATCCCCTCTTCTctctccgaaatcaagaaacattccgaattccaaaatgcatctggtcccaagcgtttcagttaagggactgtggccctgTGTAATGCCAGGCAGTGACAAGGACTGTGACTGGGAGCCATCGTAAGTCGATGCTGAGTGCCAAAGGGAGGAAAGAAGGCAGCGGTCCTTAAAGGGCCCACTGAGCTCAGATCCCACGCCTGAGCCTCCGCCTCCCCGTGCAGTCCCGGGGATGGCACACAGCCTTCTGCACGAACCGCAA a score=113097.0 s hg17.chr17_random 381802 1282 + 2618010 gtttttgagacagagtcttgctctgtcaccccagctggagtgcattggcgtgatcttggctcactgcaagctccacctcccgggctcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgctcgccacctcgcccggctaCCCTTTCAGTTttaatttattcaataatttatttatatgcttacgaatccatggacattcattttattctttggggcataatccgatttgtgtgtgtgtgtgtgtatgtctgtgtgagtgtgtgtgcactcaaatcattgtagctgtggccactgggagctcttacattttgggttccatgcccttttgaaatgcccacagctttttaaaaattttatttttgagcattttcttacttcctgggactacaagatgctccaggttcatcttgtattttctctcccacatcccaattatcagccatttctccagggagacttggctccttttattgaagatgaaatttagaaactaacatctgggcatggaatgtgcttgctgctactggggtgtcccctctcaaaggacaaacccaggatctacagatgtgtgtgctaagccatgtatgcacacgcacgtgtgtgtgtatatatttaacctatctgtatatatgtattatgtaaacatgagttcctgctggcatatctgactataactgaccacctcagggtccattctgatctGTATATATGTATCATGtaaacacgacttcctactggcatatctgactgtaaccgaccacctcagggtccattctgatctgtatatatgtatcatgtaaacatgatttcctactggcatatctgactataactgaccacctcagggttcattcCGatctgtatataagtatcatgtaaacacgagttcctgctggcatatctgactgtaaccgaccacctcaaggtccattctGatctgtatatatgtatcatgtaaacacgagttcctactggcatatctgactataactgaccacctcagggtccattctgatctGTATGTATGTATCATGTAAACACGAGTTCCTACTGGCATATCTGACTATAACTGACCACCTCAGGGTCCATTCCGatctgtatataagtatcatgtaaacacgagttcctgctggcatatctgactgtaaccgaccacctcagggtccattctgatctGTATATATGTATCATGTAAACACGAGTTCCTGCTGGCATATCTGACTATAACTGACCACCTCAGGGTCCATTCTGATCTGTATATATGTAT s panTro1.chrUn_random 236826794 1276 - 240967748 GtttttgagacagagtcttgctctgtcaccccagctggagtgcattggcgtgatcttggctcactgcaagctccacctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgctcgccacctcgcccggctaCCCTTtcagttttaatttattcaataatttatttatatgcttacaaatccatggacattcattttattctttggggtataatccgatttgtgtgtgtgtctgtgt--gtctgtgtgtgtgtgtgtgcactcaaatcattctagctgtggccactgggagctcttacattttgggttccatgcccttttcaaatgtccacatctttttaaaaattttatttttgagcattttcttacttcctgggactacaagatgctccaggttcatcttgtattttctctcccacatcccaattatcagccatttctccagggagacttggctccttttattgaagatgaaatttagaaactaacatctgggcatggaatgtgcttgctgctactggggtgtcccctctcaaaggacaaacccaggatctacagatgtgtgtgctaagccatg----cacatgcacgtgtgtgtgtatatatttaacctatctgtatatatgtattatgtaaacatgagttcctgctggcatatctgactataactgaccacctcggggtccattctggtctgtatatacgtattatgtaaccatgagttcctgctggcatatctgactataaccgaccaccttagggtccattctgatctgtatatatgtattatgtaaacatgagttcctactggcatatctgaatataaccgaccacctcagggtccattctgatctgtatatatgtatcatgtaaacacgagttcctgctggcatatctgattataaccgaccacctcagggtccattctgatctgtatatatgtatcatgtaaacatgagttcctgctggcatatctgattataaccgaccacctcagggtccattctgatctGTATATATGTATCATGTAAACACGACTTCCTGCTGGCATATCTGATTATAACCGACCACCTCAGGGTCCATTCTGatctgtatatatgtatcaggtaaacacgagttcctgctggcatatctgactgtaaccgaccacctcagggtccattctgatctgtatatatgtatcatgtaaacacgagttcctactggcatatctgattataaccgaccacctcagggtccattctgatctgtatatatgtat a score=14707.0 s hg17.chr17_random 383102 171 + 2618010 ACCTCAGGGTCCATTCTGATCTGCATATATGTATAATATATATTATATATGGACCTCAGGGTCCATTCTGATCTGTATATATGTATCATGTAAACATGAGTTCCTGCTGGCATATCTGTCTATAACCGACCACCTTAGGGTCCATTCTGATCTGTATATATGTATAATATA s panTro1.chrUn_random 236828115 171 - 240967748 acctcagggtccattctgatctGTATatatgtataatatatattatatatggacctcagggtccattctgatctgtatatatgtatgatgtaaacacgagttcctactggcatatctgactataactgaccacctcagggtccattctgatctgtatatatgtatcatgta a score=107106.0 s hg17.chr17_random 383286 1187 + 2618010 CCTCAGGGTCCATTCTGATCTGTATATATGTATCATGTAAACATGAGTTCCTGCTGGCATATCTGTCTATAACCGACCACCTTAGGGTCCATTCTGATCTGTATATATGTATAATATATATTACATATGGACCTCAGGGtccccgctggcttttccatgacttccttatccagctgtgagaaccctgactcttactac------tgtattgacttatttgtgaaaccttagtatatataaaagtagtttcaaagttgctaacatgtattgctgtgggaaacaattttaccaattggagtttagtgcttagatatgcagagttatttgattctttccagaatctaatcaaaacactgtttttggacttacccaggtcagctcctttctgcccactctttcagcgcaggcgtgtcctgctgtggaacacactctgggattcctgtgtgggtctgtacccatcctgtacccgtcaggacccccaggccccaactcttgatgttgttcttgctcctcttgttgatcttgttgttcccacagtgaggtccagtcctgtggggtttgacaaacacagcatcacgtacccagctctgtagagccacacagaagactttcatccctcaaaaatggccccagttcggcccctcggtagtaaactcctctcccctcactcacccactggcaaacactgatctgtttctgtcccgataattgtgtctttccATATACACAAAAGTGAAGTCTGAGGGTGAGGCCCATGGCCTTGGGAAGCAGGCATAANTTGGGGGGGGTGGGCACACAGGGTCACCGCGGAAGAAGATCCATGCTGCCCACACAGCCACATGTGGGACAGGGCAGGACCAGCCCCCCAAGCTGTGAACCTCGCCCGAGGCTATGCCCCACTCTGGAGCAGAATGGCCTCTGCAGAGCTTCCACCATGCACATAGGGAGTGCACAGCCAGGCCAGGAAGGGGAGGGCCCCTGTCTGCAGAGACAGGCCCATCCTGGACAGGAGGGAACAGCATTCCAGGCAGATCCGCCACTGGCTGCTGTTCCCAGAGTGGCTGTGTCCCCTCTGCAGCGTCCATGCCGGcctcccctgcctccctctgcagctgtcgctctccaccct-cctctcctttcttctctccatcccccctc-catccccgtctcctttctcctctccatccccctct s panTro1.chrUn_random 236828326 1195 - 240967748 cctcagggtccattctgatctgtatatatgtatcatgtaaacacgagttcgtactggcatatctgactataaccgaccacctcagggtccattctgatctgtatatatgtataatatatattatatatggacctcagggtccccgctggcttttccatgacttccttatccagctgtgagaaccctgactcttactacccatactgtattgacttatttgtgaaaccttagtatagataaaagtagtttcaaagttgctaacatgtattgctgtgggaaacaattttaccaattggagtttagtgcttagatatgcagagttatttgattctttccagaatctaatcaaaacactgtttttggacttacccaggtcagctcctttctgcccactctttcagcgcaggcgtgtcccgctgtggaacacactctgagattcctgtatgggtctgtacccgtcctgtacccgtcaggacccccgggccccgactcttgatgttgttcttgctcctcttgttgatcttgttgttcccacagtgaggtccagtcctgtggggcttgacaaacacaacatcacgtacccagctctgtagagccacacagaagactctcatccctcaaaaatagccccagttcggcccctcggtagtaaactcctctcccctcactcacccactggcaaatactgatctgtttctgtcccgataattgtgtctttccATATACACAAAAGTGAAGTCTGAGGGTAAGGCCCATGGCCTTGGGAAGCAGGCATAAGTTGGCGGAGGTGGGCACACAGGGTCACCGCGGAAGAAGATCCATGCTGCCCACACAGCCACATGTGGGACAGGGCAGGACCAGCCCCCCAAGCTGTGAACCTCGCCCAAGGCTATGCCCCACTCTGGAGCAGAACGGCCTCTGCAGAGCTTCCACCGTGCACATAGGGAGTGCACAGCCAGGCCAGGAAGGGGAGGGCCCCTGTCTGCAGAGACAGGCCCATCCTGGACAGGAGGGAACAGCATTCCAGGCAGATCTGCCACTGGCTGCTGTTCCCAGAGTGGCTGTGTCCCCTCTGCAGTGTCCATGCCGGcctcccctgcctccctctgcagctgtcgctctccaccctccctctcctttctcctctccatccccctccgcatccgcctctcctttctcctctcgacccccctcT a score=1441.0 s hg17.chr17_random 384634 72 + 2618010 TCTTTCCCTTNCCTGCCACAACTGAACTGAGTGCAGGTGATTTTCGCTGCCTGCTGGCTTTATTCAGCTTCA s canFam1.chrUn 84672509 70 - 91062872 TCTTCCCCCTCCCCGGCGTTGTTGCTGCAAGAATAGGCTGCTCTCATTTGCTG--GGCTTTACCCGGTTTCA a score=46461.0 s hg17.chr17_random 384706 328 + 2618010 ACTTCTTGACTTTAAAGGTGGATGCAGGAAATGTGTGTCTTGTGTCACACATGGAAATGTTGCTGAAATAAGTTACTCTTCACTGATGTGGCCTCGAGGGTTTTCTGCTGGGTTTCTGGACCTTGTAAGCAAAGCAGACCCTCACCCGACTGACCTCCTGGCTGTGACGATGTGTGTTTCTATCCCACACAGGGAGGGTGTTTATGGTCTGAAGTGAGGCCTCTCATTAACTCCTCAAGAGTCGATTGAAGCACAATTTATTAGAGCCCAGAAATCATGGCAATCCATTCCCACAAGCACACAGCACAGCTAAACCAG------CTCCAAGGAG s panTro1.chrUn_random 236830211 327 - 240967748 ACTTCTTGACTTTAA-GGTGGATGCAGGAAATGTGCCTTTTGTGTCACATGTGGAAATGTCGCTGAAATAAGTTACTCTTCTCTGATGTGGCCTCGAGGGTTTTCTGCTGGGTTTCTGGACCTTGTAAGCAAAGCAGACCCTCACCCGACTGACCTCCTGGCTGTGACGACGTGTGTTTCTATCCCACACAGGGAGGGTGTTTATGGTCTGAAGTGAGGCCTCTCGTTAACTCCTCAAGAGTCGATTGAAGCACAATTTATTAGAGCCCAGAAATCATGGCAATCCATTCCCACAAGCACACAGCACAGCTAAACCAG------ATCCAAGGAG s canFam1.chrUn 84672579 271 - 91062872 GGTTCTTCACTTTAAAAGCAGTTGCAGGAAATGTGTGGCTTGTGTCACTCCC--AAATGTCACTGACACAAGTTACTTTTCACTGATGTGGCCTCTGGTGTTTTCCGCTGGGTTTCTGGACCTTGTAGAC-AAGCAG--CCCCACCCAGCTGACCTC----------TGATGAGC--------------CAGGGAAGGTGTTGA-GGTCTGAGGAGTGGACTCCC--TGAGCCCTCCACCTCCCTCTGA--CACAGTGTCACAGAGCCTCG-----------------------------GCCACACGGCTGGACCAGCCGCCCCTCCAGGGAG a score=146963.0 s hg17.chr17_random 385034 1665 + 2618010 GGTCCGAGTGT--CCACAACTGCACCCCAGGCCCATTGTGCCTGCCGCTGGAGAGCGTGGGGccccttggcccctaaaggtttgctgagaagtcactgacatgagacagatggattaataggagaaacggtatgcaaatttatgtgatgtgtacatataagaacctttagaacgaagacccaacgatgggggaaattgtccatttttatgtttaggtttaataacgtatgaacagtcctctaaaaaaaggattggacacaaagggcttgatctaatgtgaatagactgagtgggaacccagcaaggtctgtctagatttgtcttcgtctctgagcattttcttctctggacgtggggcagggccctctctggaatgacagtctcatgacctacagtcaaacaagggatgttggatcatttctctctagtcagctcttatatagaaaggtagacggaaaactgagtaatatttttaggttttctgaccagctttggggagaaggggttctgatttctgtgaccggccttggggaaaaagagagtctggtttctacagcgccttcggggagaatgagactgagagacaggagggcaggagaaggtcagagacaacttttgcttctgaggctgctgctgaggacttcattttggggcgttgttttctgagccccaacaGAAGGAAGGAAGCCTCTCCCTCCAGGGGTCAGTCCTGGGCCTCAAGGGCACCCTCGAAGCAGGCAGCTCAGCTCACAGAGCTCCCCTCGGCCATGTCCTCCACCTGCCCTTCCTTGGTCCAGCACCTCACCTGCACACACCTGTCTGGAGAGTCCCCGAGGTTGGAGAGCTGCTGAGTCAGCTGGGCCGAGCACACAGCGCAATACTTCCTTGTGCCTCCTAACCAGGATGGGCGACACCAGCCCATTTTATGGATGGGACAAGAAGAAGCTGGGCTGACAAGCCCAACATAGTGGAGCCAGCAACAGGCTTTTACTCTCCTCTCTGTCTCTTTGTCTCTCTCCCCCACCGCACCTCCATCCGCTCCATTCTCCTCTCTGCACATCAGCTTCCCAGACAATATTCTTGGTTTCTGTGGCTCCCAAACTGAAGCTTCCCCACAGTGGCTGCAACTATCCAGACCTGGGGCCACACTTGGGCCTCCAGGCAGGGGATCTAGTGATCACATTCTGGTCATGTCATCAGGCCAACTTGGCTGAGCTCTGCCCTCCTTATCTCTCCTCTCCCCTCGAGCCCTCACCCTGGTTACCTGCACAAGTAAACTTGCCCCTAACTGACCCCCTTTTCTCCCTCCATGTCCCTCAATACAACACTAACTCTGGCAAAAAAGACCAGCCTggccaggtgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacaaggtcaggacatcaagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaa-ttagccaggcatggtggcaggcacctgtagtcccagctacgcgcgaggctgaggcaggagaatggcgtgaacccgggaggcggtgcttgcagtgagccgagatcgcgccactgcactccagcgtgggcgacagcgagactccgtctcaaaaaaaaaaaaaaaaaaGACCAGCCTGAAGCAGA s panTro1.chrUn_random 236830538 1649 - 240967748 GGTCCGAGTGTGGCCACAACTGCACCCCAGGCCCACGGTGCCTGCCGCTGCAGAGCGTGGGGccccttggcccctaaaggtttgctgagaagtcactgacatgagacagatggattaataggagaaacggtatgcaaatttatttaatgtgtacatataagaacctttagaacgaagacccaacgatgggggaaattgtccatttttatgtttaggtttaataaagtacgaacagtcctctaaaaaaaggattggacacaaagggcttgatctaatgtgaatagactgagtgggaacccagcaaggtctgtctagatttgtcttcgtctctgagcattttcttctctggacgtggggcagggccctctctggaatgacagtctcataacctacagtcaaacaagggatgtcagatcatttctctctggtcagctcttatatagaaaggtagacagaaaactgagtaatatttttaggttttctgaccagctctggggagaaggggttctgatttctgtgaccggccttggggaaaaagagagtctggtttctacagtgccttcggggagaatgagactgagagacaggagggcaggagaaggtcagagacaacttttgcttctgaggctgctgctgagggcttcattttggggcattgttttctgagccccaacaGGAGGAAGGAAGCCTCTCCCTCCAGGGGTCAGTCCTGGGCCTCAAGGGCACCCTCAAAGC------------TCAGAGACCTCCCCTCGGCCATATCCTCCACCTGCCCTTCCTTGGTCCAGCACCTCACCTGCACACACCTGTCTGGAGAGTCCCCAAGGTTGGAGAGCTGCTGAGTCAGCTGGGCCGAGCACACAGCGCAACACTTCCTTGTGCCTCCTAACCAGGATGGGCGACACCAGCCCATTTTATGGATGGGACAAGAAGAAGCTGGGCTGACAAGCCCAACACAGTGGAGCCAGCAACAGGCTTTTACTCTCCTCTCTGTCTCTTTGTCTCTCTCCCCCACCGCACCTCCATCCGCTCCATTCTCCTCTCTGCACATCAGCTTCCCAGACGATATTCTTGGTTTCTGTGGCTCCGAAACTGAAGCTTCCCCA-AGTGGCTGTAACTATCCAGACCTGGGGCCACACTCGGGC-TCCAGGCAGGGGATCTAGTGATCACATCCTGGTCATGTCATCAGGCCAACTTGGCTGAGCTCTGCCCTCCTTATCTCTCCTCTCCCCTCGAGCCCTCACCCTGGTTACCTGCACAAGTAAACTTGCCCCTAACTGAGCCCCTTTCCTCCCTCCATGTCCCTCAATCCAACACTAACTCTGGCAAAAATGACCAGCCTggccaggtgcggtggctcacgcctgtaatcccaccactttgggaggccgaggcgggcggatcacgaggtcaggacatcaagaccatcctggctaacacgatgaaaccccgtctctactaaaaatacaaaaaaattagccgggcgaggtggtgagcgcctgtagtcccagctacgcgggaggctgaggcaggagaatggcgtgaacccgggaggcggtgcttgcagtgagccgagatcacgtcactgcaccccagcctgggtgacagcgagactccgtctcaaaaaaaaaaaaa-----GACCAGCCTGAAGCAGA a score=72989.0 s hg17.chr17_random 386699 619 + 2618010 GATTGGGTCCCAGCCTGGCTCTGCCTGGCCCTCTGCTCCCGCTTCACCTCACAGACAGAACGCTGCCCTGTGGAGGGGTCCCCGGACCCT----------------------------------TTGGTGGGTGCCAA---------GCGGGTATGGAGGCCAAGGCCTGAGTG-----------------------GTGAGA----------------ATAGTCCAGGGGCTAG---------------------------------------------------------CGCTGCGTGGGGA-GGGCGAGCTCAGAGAGCAGGGGA-GCCTGACCCTGCAGGTCAAGACTTCTGTCTGAGAGAAATGAAAAG---CTGGGGATTTTAA-----------------------------------------------------------------GCAAAGGAATG--CCTTGACCCAACCCTCACAACTTACATAATAATTAACTTAAAAGGAATCATAAGTTTAAACAGAAAATCTATATAAGAGGTTTACAGtttaa---tttaaaaactataataggtttatagtttttaaattaaaatt-----------ttaaatataGTGGTTTATAAAACTTTGAGAAGAAAACATAAAATCCCTATGAATGctgcaaaagtcactgttgagagaatgaaaacacaagacatacagttggagaaaatatttgtgaatctcatatctggcaaaggaattgtatctagaatacataaagaactctcaaaatccaacagtaaaaacaccaaataatccagttacaaaccgggg-aaggacttgaacaga s panTro1.chrUn_random 236832187 618 - 240967748 GATTGGGTCCCAGCCTGGCTCTGCCTGGCCCTCTGCTCCCGCTTCACCTCACAGACAGAACGCTGCCCTGTGGAGGGGTCCCCGGACCCT----------------------------------TTGGTGGGTGCCAA---------GCGGGTATGGAGGCCAAGGCCTGAGTG-----------------------GTGAGA----------------ATAGTCCAGGGGCTAG---------------------------------------------------------CGCTGCGTGGGGA-GGGCGAGCTCAGAGAGCAGGGGA-GCCTGACCCTGCAGGTCAAGACTTCTGTCTGAGAGAAATgaaaag---ctggggattttaa-----------------------------------------------------------------gcaaaggaatg--ccttgacccaaccctcacaacttacataataattaacttaaaaggaatcatgagtttaaacagaaaatctaTATAAGAGGTTTACAGtttaa---tttaaaaactataataggtttatagtttttaaattaaaatt-----------ttaaatataGTGGTTTATAAAACTTTGAGAAGAAAACAGAAAATCCCTATGAATGctgcaaaagtcactgttgagagaatgaaaacacaagacatagagttggagaaaatatttgtgaatctcatatctggcaaaggagttgt-tctagaatacataaagaactctcaaaatccaacagtaaaaacaccaaataatccagttacaaaccgggg-aaggacttgaacaga s canFam1.chrUn 84673303 823 - 91062872 GGTAGGATCGCAGCCGGGCCCTGGCTCACCCGCCTGTTGCCCTTCCCCTCACAGTCAGCACGCAGCCTGGGGCTGGGACCCCAGAGCCCTGGGTCCACCCTGCACGTTCCCGTCACCCTGGACGCTGGCGAGGGCTCACTCACACCCACGGCAGTGGGAGCAGAGCTCCGTGTGCCTGCCTCATGGCTTCGACCCCCGTGGGAGAGACTGACAGGGGCGGCAGGGCAGAGGCCAGTAGGCCCAGAAGCCACGTTGCAGCGGGGGGTCCCTGCACAAGGGATAGGCTGGGTCTCCCCGTGTGCGGACGGGGGAGCTCGTGGAGGAGGGGAGGCCTGATCC-ACAGGAGAGGAGTCTCGCCTAGAGCATGTGGAATGCCACCGGGGATTTTACAAAGAGGAAGCCGTGACTCATGTCTGTATTTGTCaacggtaagagaaaaacatggacatcgacatgcaaaaaaatgaaccttgacttaaacctcacactttacataagaattggggtaaaatggatcagagactaaatgataaaacttctggaaga---tagcagagaagatcttcatgaact----tgggttcctacctgtgacattaaaagcacgatccataacggaaagtagtcgcaaattggatttcaccaaaatgaca-------------aactttacagaaagcaatgtgaggaggacggaaatagaagacgtggactgggagaaaatatttccacatcacatatctgacgaagcaattgtgtccagaatgattaaggaagtctcagaaacccacagcaaagaca-caaatcgcccaaacacagactggggcaagggctggggccga a score=19419.0 s hg17.chr17_random 387318 220 + 2618010 tgcgtcaccaagcaagggatatggatgggaaataagcttccatcagccaccagggagatgcaaattacagccactaggaaacgcttttcattcattccgggatggctgaaatgtaa-gcacggaaaatgctgggtgcccgcaagaacgcggagcagcaggcactcattcccgattagcgggagcgcaaagcgaaggggcggcctgtggtgttttcctgtaa s panTro1.chrUn_random 236832805 221 - 240967748 tgcgccaccaagcaagggatatggatgggaaataagcttccatcagccaccagggagatgcaaattacagccactaggaaaggcttttcattcattccgggatggctgaaatgtaaagcacggaaaatgctgggtgcccgcaagaacgcggagcagcaggcactcattcctgattcgcaggagcgcacagcgaaggggcggccggtggtgttttcctgtaa a score=21793.0 s hg17.chr17_random 387538 160 + 2618010 agttgggca-cacgcttcccacatgactcagcaattgcacttctgggtatgtacccgagagaaacaaaagcttatgttcacacaaaaacctacaacgcaaatgcacaa-acagctctatccaacaaccatcccaccctggaagcaacccaaacacgcttcag s panTro1.chrUn_random 236833026 160 - 240967748 agttgggca-cacgctgcccacatgactcagcaattgcacttctgggtacgtacccgagagaaacaaaagcttatgttcacacaaaaacctacaacgcaaatgcacaa-acagctctacccaacaaccatcccaccctggaaacaacccaaacacgcttcgg s canFam1.chrUn 84674243 161 - 91062872 AGGTGGGCACCGTGTTTACTGCGCCACTCGGCGATCATCCTGCTGTGGGGCAACCTGagagacacgaacacctgcactcacacaaacatctgt-gcactaacgtacaaggcaagtgtatgccgcagtcacccagaactggaaagagcccgaatatccctcGG a score=95160.0 s hg17.chr17_random 387698 1056 + 2618010 cggCACAGGCGCCTCCACGCGGAACCCCACGCGGCGCTCAGCACGGACGAGGAGGGAGCCGCGCACGCGCGGTCGGCTCGGCGAGGAGCCGGTCTCCAAGTGCCGCCAGCTGCGGGATTTCCTCTGCAAAAGACAAACCACAgggagagctgccggggctgggtcgggg-agtgtgactgtgaacggagttctgggggtgatgtaactgttctgtatccacagtgttgctacatgaatctataaatgtgttaaactcatagaactgtacaccgaaaaatagcagttttgctgaatgttaattCAGAAATGAAATTAAAATTTTAAATTAA-CAACAA-GCAACTTTACAAGAGAA-----------AAAAAAAAACCTCATTTCCTCCCCACAAAGCCACCTCATGAGCCTGGGTGGTGCCTAGCCAGTCCTGCTGCTGAACCTGCTCTGACCTGGCCTAAGGGTAGGACTCGAGGCTGGGAGCCAAGGGCCAACCACAGGACAGGCAGCAAGACCCGCTTCGCTGGTCTGTCACACACACCGCACCAAGTCTGTGCTCAGGATAAACCGGGGCACACTCTGAGCTGGGCCTGTCTCCGGCTTCAACCAAAAAGCCTGAGCTCTAGCAGGTGAAGGACCAGACGTTTCTGTGGGGCTATGGACTTGTCTGGGAGGCAGCCACCTCTAAGCCACCCAGGATGGTTTCGGTTGTGTTTGGATGGAGTTCTGAGTTTTGCCAGTTAAAATTCCCCCTTCAGGAGCTCTCTATGGGGTTAAAGTGCAAGATTTGGGGTAGAAAAATGACAAGTCAGAGGACTGGAAGGAACATTATGGACTGTCCTCCCTTCTGCCTGAAGAGATGGGGAGACTCTCCCAGGCCATGTGGAAGACCTCACAGGGGGACCAACTGCTGCCTTTCAGCCTGGCCGAGGGAAGAGCCCCTGACTCAGCCTCCGCAGGAGGAGGTGGGCTGGAACCAAGTTTCCCTGCATCAATCCAGGCAGGCAGCCCCGAACAGTGCACTCCAACATGGGATAGTGAGCCAGCTTGGGGGACGGCAGCTGTCTAAA s panTro1.chrUn_random 236833186 1070 - 240967748 cggCACAGGCGCCTCCACGCGGAACCCCACGCGGCGCTCAGCACGCGCGGGGAGGGAGCCGCGCACGCGCGGTCGGCTCGGCGAGCAGCCGGTCTCCAAGTGCCGCCAGCTGCGGGATTTCCTCTGCAAAAGACAAACCACAGGGAGAGCTGCCGGggctgggtgggggcagtgtgactgtgaacggagttctggggctgatgtaactgctctgtatccacagtgctgctacgtgaatctataaatgtgttgaactcatagaactgtacaccaaaaaatagcagctttgctgaatgttaattCAGAAATGAAATTAAAATTTTAAATTAAGCAACAAAGCAACTTTACAAGAGAAGAGAAAAAAAAAAAAAACAACCTCATTTCCTCCCCACAAAGCCACCTCATGAGCCTGGGTGGTGCCTAGCCAGTCCTGCTGCTGAACCTGCTCTGACCTGGCCTAAGGGTAGGACTCGAGGCTGGGAGCCAAGGGCCAACCACAGGACAAGCAGCAAGACCCGCTTCGCTGGTCTGACACACACACCGCACCAAGTCTGTGCTCAGGATAAACCGGGGCACACTCGGGGCTGGGCCTGCCTCCGACTTCAACCAAAAAGCCTGAGCTCTGGCAGGTGACGGACCAGGCGTTTCTGTGGGGCTACGGACTTGTCTGGGAGGCAGCCACCTCTAAGCCACCCAGGATGGTTTCGGTTGTGTTTGGATGGAGTTCTGAGTTTTGCCAGTTAAAATTCCCCCTTCAGGAGCTCTCTATGGGGGTAAAGTGCAAGATTTGGGGTAGAAAAATGACATGTCAGAGGACTGGAAGGAACATTATGGACTGTCCTCCCTTCTGCCTGAAGAGATGGGGAGACTCTCCCAGGCCATGTGGAAGACCTCACAGGGGGACCAACTGCTGCCTTTCAGCCTGGCCGAGGGAAGAGCCCCTGACTCAGCCTCCGCAGGAGGAGGTGGGCTGGAACCAAGTTTCCCTGCATCAATCCAGGCAGGCAGCCCCGAACAGTGCACTCCAACACGGGATAGTGAGCCAGCTTGGGGGACGGCAGCTGTCTAAA a score=2119.0 s hg17.chr17_random 388754 13 + 2618010 CAGGAGCGTGCAA s panTro1.chrUn_random 236834256 13 - 240967748 CAGGAGCGTGCAA s fr1.chrUn 6362113 13 - 349519338 CAAGAGTCTGAAG a score=90.0 s hg17.chr17_random 388767 10 + 2618010 -CCCCCATGCT s panTro1.chrUn_random 236834269 10 - 240967748 -CCCCCATGCT s mm5.chr2 15175384 10 - 181686250 -CCCTCCAGCA s fr1.chrUn 6362126 10 - 349519338 CTCTACAGGT- a score=91.0 s hg17.chr17_random 388776 1 + 2618010 T s canFam1.chr5 55591183 1 - 92064832 T a score=29166.0 s hg17.chr17_random 388777 169 + 2618010 GAGAGCTCCCCAGGGTCACGA----------------------------------CTACCCAGAGTCAGAGCTGCCCAGGGTCACAGCTACTC-------------------------------GAGGTCAGAGCTGCC----------------CCAGATCAGGGCTGCCCAAGGTCAGAGCTGTCCTGGGTCAGAGCTGCCCACGGT-CAGAG-CTGTCCTGGGCATCAGAGGCGC-------------------------------------AGAGGT------GGGAAGGG--------- s panTro1.chrUn_random 236834279 169 - 240967748 GAGAGCTCCCCAGGGTCACGA----------------------------------CTACCCAGAGTCAGAGCTGCCCAGGGTCACAGCTACTC-------------------------------GAGGTCAGAGCTGCC----------------CCAGATCAGGGCTGCCCAAGGTCAGAGCTGTCCTGGGTCAGAGCTGCGCACGGT-CAGAG-CTGTCCTGGGCATCAGAGGCGC-------------------------------------AGAGGT------GGGAAGGG--------- s mm5.chr2 15175394 149 - 181686250 CAGGGCTGCTCCAGCTCAGGG----------------------------------TCCCTCCAGCACAGGGCTGCTCCAGCTCAGGGTCCCTC-------------------------------CAGCACAGGGCTGCT----------------CCAGCTCAGGGTCCCTCCAGCATAGGGCTGCTCCAGCTCAGGGCTGCTCCAGTT-CAGAGTCTCTCCAGCTC----------------------------------------------------------------AGGG--------- s rn3.chr3 6713055 186 - 170969371 GGGAGCTACCTAAGGGGAGGAGCCACGTAGGGGGAGGAGCCACGTAAGGGAGGAGCCACCCGAGGGCGGAGCCACCCGAGGGCGGAGCCACCC-------------------------------GAGGGCGGAGCCACC----------------CGAGGGCGGAGCCACCCGAGGGCGGAGCCACCCGAGGGCGGAGCCACCCGAGGG-CGGAG-CCACCT------------------------------------------------------GAGGT------AGGAAGGG--------- s canFam1.chr5 55591184 243 - 92064832 AAGAGCTGCCCCAGGAAAAAG----------------------------------ATGTTCCAGGTAAGAGCTGCCCCAGGTAAGAGCTGTCCCGTAAGATCTGTCTCCAGTGAAAACCTATCTCAGGTAAAAGCTGCC----------------CCAGGTAAAAGCTGCCCCAGGTAAAAATTATCTTAGGTGAGAGCTATCTCAGGT-AAGAG-CTGTTCCAGGTAAGAGCTGTCCCAGGTAAAACTGCCCCAGGTAAAAGCTATCTCAGATGAGAGGCATCCCAGGTAAGAG--------- s fr1.chrUn 6362136 184 - 349519338 CAGAGCTACCAAGAGTCCAGA----------------------------------GCTCTACAGGTCAGAGCTGCCAAGAGTCTGAAGCTCTA-------------------------------CAGGTCAGAGCTACCAAGAGTCCAGAGCTCTACAGGACAGAGCTACCAAGAGTCCAGAGCTCTACAGGACAGAGCTGCCAAGAGTGCAGAG-CTCTACAGGTC------------------------------------------------AGAGCT------GCCAAGAGTCTGAAGCT a score=2767.0 s hg17.chr17_random 388946 32 + 2618010 CTGGCTTCAGGTGGGAGTTAT----AGGTGGGAGTT s panTro1.chrUn_random 236834448 19 - 240967748 CTGGCTTC-----------------AGGTGGGAGTT s mm5.chr2 15175543 31 - 181686250 CT-GCTCCAGCTCAGAGTTAT----TGGGAGGAAAT s canFam1.chr5 55591427 34 - 92064832 CT-GCCCCAGGTAAAAGCTATCTC-AGGTGAGAGCT s fr1.chrUn 6362320 32 - 349519338 ----CTACAGGTCAGAGCTACCAAGAGTCCAGAGCT a score=-3176.0 s hg17.chr17_random 388978 69 + 2618010 ----------ATGCTACAAAGGGTCTTGA-------AGGCCAGTGT-TGTTGACAGGGTAGGGTGCC-TGGGTAATAGCAGAGGAAGA s panTro1.chrUn_random 236834467 70 - 240967748 ----------ATGCTACAAAGGGTCTTGA-------AGGCCAGTGTATGTTGACAGGGCAGGGTGCC-TGAGTAATAGCAGAGGAAGA s mm5.chr2 15175574 15 - 181686250 ----------AT---------------------------------------------------------------CACCAGAGAAAGA s fr1.chrUn 6362352 81 - 349519338 CTACAGGACAGAGCTACCAAGAGTCCAGAGCTCTACAGGACAGAGC-TGCCAAGAGTCCAGAGCTCTACAGGTAAGAGCTAC------ a score=4888.0 s hg17.chr17_random 389047 31 + 2618010 AAAAGGCTTAGAGTTGGAGGGAAAAACATGA s panTro1.chrUn_random 236834537 31 - 240967748 AAAAGGCTTAGAGTTGGAGGGAAAAACATGA s mm5.chr2 15175589 31 - 181686250 AAGGAGCCTAGAGCGTGAAAGCAGGGTGTGA s canFam1.chrUn 84674584 31 - 91062872 AAAAGGCTGTGAAGGGCAGGAGGAGACGAGA s fr1.chrUn 6362433 31 - 349519338 CAAGAGTCTGAAGCTCTACAGGTCAGAGCTA a score=13729.0 s hg17.chr17_random 389078 163 + 2618010 ACTGGAGTTGGGGG------AGTGCA--CCTGC-CCCCTCAGAGACCACAAAGCCTCCCCAGGGCTGGGCTGT--GGCTGCTGGAGCTCC-CAGCCCA----TGCCAAGTGT-CAGAGCC---CGGGCAAGACCCTCTGGGGTAGCCCGGGACCACCAGAGGTCAGAGCTGGAGGAGGCTCAG s panTro1.chrUn_random 236834568 163 - 240967748 ACTGGAGTTGGGGG------AGTGCA--CCTGC-CCCCTCAGAGACCACAAAGCCTCCCCAGGGCTGTGCTGT--GGCTGCTGGAGCTCC-CAGCCCA----TGCCAAGTGT-CAGAGCC---TGGGCAAGACCCTCTGGGGCAGCCCGGGACCACCAGAGGTCAGAGCTGGAGGAGGCTCAG s canFam1.chrUn 84674618 126 - 91062872 ACTGGACAGAGGGA---TCCAGGGCAGCCTTGCACCCCTCAGAGACCGTGAAGCC-CTGCAGGACTGGGCCCT--GGCTGC-------CT-CAGTGCC----TCCC------------CC---TGCGCCAGAGCCCCTCGGAAAGCCCAT----------GGTCGGGGC-------------- s fr1.chrUn 6362464 172 - 349519338 CCAAGAGTCCAGAGCTCTACAGGACAGAGCTAC-C------AAGAGTCCAGAGCT-CTACAGGTCAGAGCTGCCAAGAGTCCGGAGCTCTACAGGACAGAGCTGCCAAGAGTCCAGAGCTCTACAGGTCAGAGCTGCCAAG--AGTCCAG-AGCTCTACAGGTCAGAGCTGCCAAGAGTCCAG a score=98728.0 s hg17.chr17_random 389241 708 + 2618010 CTGGGGCCCTTGCACCAGGCAGGAGGCCCAGAAAAGAGACAGTGC-TCTTGAACTGCAGGAAGGCAGCTCCGTAGAGAGGCAAATCTCACTCCAGCTCGGGCAATACTCAACTACACGGACGTGGATGCTCTCAAGGGGGCTTTGGGGCATGTGGTGTCGGCATTGGACCCAAATATGGGCTCAAAGCTTTCCTTTACCATATTCTTTCTACATTTTTCTTGCAGATTGAGAAGGGATAGGGAGGAGTTTAGGGAAGTGAGTGAAGCAGGAAGATGTTGACCAAGGGAAGTTAATTCCATAaagaggaggatgaggggacagaaaggcaggaggaagaggaggaggagaaTCTTCGCACAGGGGGTGTCAGCTGATGGGG--GCAGCAT-GGGCGCCCATGGAGCCCTTTAGGGGTCGTTGGTTGTGTGCAGAGAGGCCACAGCAGGCGAGGCAGGCAGTGTCTACCAGCCCCAAGGAGACACCAAGAATCCCTGTCCTTAGGAAGTCCCCTCTTCCTCCTCTTGAG-TCTCATCTC-GGAAAGAGGGAGCTGTCAGTCAGAGCTCAGGCCAAACACTGGGGCTAATA--GGTGAGAGCAGGGACCTGTGGGGTCCTCACCGCTGTCCCC-TTCTCACCTTTCTGGCTCAGGCCAGGCTCAGCCCCCAGTGGtctat-tgtctttctatctgt-catctatctacctacccacctatgt s panTro1.chrUn_random 236834731 712 - 240967748 CTGGGGCCCTTGCACCAGGCAGGAGGCCCAGAAAAGAGACAGTGC-TCTTGAACTGCAGGAAGGCAGCTCCGTAGAGAGGCAAATCTCACTCCAGCTCGGGCAATACTCAACTACACGGACGTGGATGCTCTCAAGGGGGCTTTGGGGCATGTGGTGTCAGCATTGGACCCAAATATGGGCTCAAAGCTTTCCTTTACCATATTCTTTCTACATTTTTCTTGCAGATTGAGAAGGGATAGGGAGGAGTTTAGGGAAGTGAGTGAAGCAGGAAGATGTTGACCAAGGGAAGTTAATTCCATAaagaggaggatgaggggacagaaaggcaggaggaagaggaggaggagaaTCTTTGCACAGGGGGTGTCAGCTGATGGGGCAGCAGCAT-GGGCGCCCACGCAGCCCTTTAGGGGTCGTTGGTTGTGTGCAGAGAGGCCACAGCAGGCGAGGCAGGCAGTGTCTACCAGCCCCAAGGAGACACCAAGAATCCCTGTCCTTAGGAAGTCCCCTCTTCCCCCTCTTGAG-TCTCATCTC-GGAAAGAGGGAGCTGTCAGTCAGAGCTCAGGCCAAACACTGGGGCTAATAGGGGTGAGAGCAGGGACCTGTGGGGTCCTCACCGCTGTCCCC-TTCTCACCTTTCTGGCTCAGGCCAGGCTCAGCCCCCAGTGGTCTAT-TGtctttctatctgt-catctatctacctacccacctatct s canFam1.chrUn 84674744 627 - 91062872 ----GACC----CACCGCAAGGGTGACCCGAACCAGGGACAGTATGCCTTGAATCACAGGA--------CCT------GGCAAATCCTGCACCGTTCCCGCGGGTACTCCATTCCAGCGACGCCCAGCTTCTTGAGAGTTCCTAGCAGCGCGTGGTGTCGGCACCGG---------TG---TCCAAGATTTGCTTTACTGCATTCTTTACTTTGTCTATTTGTAGCTTGAGAAGGGTTGGGGAAGGGTTTAGGGTGGTGAGTGAAGCAAGGAGATGCTGACGACGGGAAGTTAATTCTGTAAAGAGGAGGCGAGGGAGAGGAGGGGGGAGGCAGCAGAAGCAGACGCTCTTCCTTGCA-GGTGGGTGTC------TGGAG--GCAGCCCGGGGCGTGCACGGAACCACCAGAACGACGTTTGTTTTGTTC----AGGCACCAGCAG------------GTGTCAGCCA---CAAAAGAGGCACC------TCCAGT---------GCCCCCTCTTCCTCCTCCGGGGCCCCCATCGCAGGGAAGAGGGTACTGTCAAC----ACTCAGGCCCCAAGCCTTGGTTATTGGGGGTGAATGCAAGGACTTGTGGGGCCCTCACATCTGTCCCCACTCCCACCCTGCT-----------GGCTCAGCCCCCAATAatctatccacccacctatccgtccatccatccatctattcatctatTT a score=1419.0 s hg17.chr17_random 389949 15 + 2618010 aaccatgccatctat s panTro1.chrUn_random 236835443 15 - 240967748 aaccatgccatctat a score=7003.0 s hg17.chr17_random 389964 48 + 2618010 ttcatctatttt-tatctatcaaccatctat-catatatctacctaccta s panTro1.chrUn_random 236835458 48 - 240967748 ttcatctatttt-tatctatcaaccatctat-catatatctacctaccta s canFam1.chrUn 84675556 50 - 91062872 TTCATGCATTTTCTATCGATAGCCTGTCCGTCCATCCATCCACCTCCCCA a score=873.0 s hg17.chr17_random 390012 3 + 2618010 cct s panTro1.chrUn_random 236837135 3 - 240967748 CCT s canFam1.chrUn 84675606 3 - 91062872 CCT a score=1437.0 s hg17.chr17_random 390015 15 + 2618010 CTGCCCTTCTTTCTC s panTro1.chrUn_random 236837138 15 - 240967748 CTGCCCTTCTTTCTC a score=20463.0 s hg17.chr17_random 390030 184 + 2618010 TCTACAAATTAGAGGCCACATCCCTGGCCGCT---GAAGCCTTGTACC-CTGACCCACTGTCTGAACCTGATGGAGTCTAAATGCAGTGAGCGGGTGCCAGCCTTCCCTGGAGCTCTGCAGAGGCAAGGAGGGGGTGGATGGAAAGACGGGAGTCCCTCCCCTTAGGTGAGGGGGGGAACTAGGGCCC s panTro1.chrUn_random 236837153 184 - 240967748 TCTACAAAATAGAGGCCACATCCCTGGCCGCT---GAAGCCTTGTACC-CTGACCCACTGTCTGAACCTGATGGAGTCTAAATGCAGTGAGCAGGTGCCAACCTTTCCTGGAGCGCTGCAGAGGCAAGGAGGGGGTGGATGGAAAGACGGGAGTCCCTCCCCTTAGGTGAGGAGAGGAACTAGGGCCC s mm5.chr11 169023 162 - 121648857 TCTACTGCCTAG-GGCCACAACTTTGCCTCTTCTGGAGACCATGTCCTGTTCTCCCAC--TCCAGACCATGTGGGACCTGAGTGCAGTAAGCTTGTGCCAACTGGTTTAGGAGCTCTTCGGAGAT-----GAAGGCAGATG---AGACA---------------CAGTAAGATGTGAAACCTGAGCCT a score=742.0 s hg17.chr17_random 390214 9 + 2618010 GGGGAGATG s mm5.chr11 169185 9 - 121648857 GGGAAGATG a score=1532.0 s hg17.chr17_random 390233 49 + 2618010 GCGGCTGGCGTACGTGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCAGGA s danRer1.chr17 3332081 49 + 35757233 GCAGACAGCGTTCTAGGCCAGTTTATGATCAGCAGACGGCGCTCTAGGC a score=7487.0 s hg17.chr17_random 390282 71 + 2618010 GGGGAGATGCCCAGGCCTGGCGGCCGGCGCACGCGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCAGGAGAG s panTro1.chrUn_random 236837337 71 - 240967748 GGGGAGATGCCCAGGCCTGGCGGCCGGTGCACGTGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCGGGAGAG s danRer1.chr17 3332130 65 + 35757233 ------TAGTTTATAATCAGCTGACAGCGTTCTAGGCTAGTTTATAATCAGCAGACGGCATTTTAGGCCAG a score=7723.0 s hg17.chr17_random 390353 65 + 2618010 GAGATGCCCAGGCCTGGCGGCCGGCACACGTGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCAGGA s panTro1.chrUn_random 236837340 65 - 240967748 GAGATGCCCAGGCCTGGCGGCCGGTGCACGTGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCGGGA s danRer1.chr17 3332195 59 + 35757233 ------TTTATGATCAGCCGACGGCGTTCTAGGCTAGTTTATGATCAGCAGACGGCGCTCTAGCC a score=7990.0 s hg17.chr17_random 390418 70 + 2618010 GGGGAGATGCCCAGGCCTGGCGGCCGGCGCACGTGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCAGGAGA s panTro1.chrUn_random 236837337 70 - 240967748 GGGGAGATGCCCAGGCCTGGCGGCCGGTGCACGTGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCGGGAGA s danRer1.chr17 3332254 64 + 35757233 ------TAGTTTATAATCAGTAGACGGCGTTCTAGGCTAGTTTATAATCAGCAGACGGCGCTCTAGGCTA a score=6177.0 s hg17.chr17_random 390488 68 + 2618010 GGAGATGCCCAG-------------------------GCCTGGCGGCCGGCACACGTGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCAGGAGA s panTro1.chrUn_random 236837339 68 - 240967748 GGAGATGCCCAG-------------------------GCCTGGCGGCCGGTGCACGTGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCGGGAGA s danRer1.chr17 3332318 93 + 35757233 GTTTATAACCAGCAGACAGCGCTCTACGCTAATTAATAATCAGCAGACGGCACTCTAGGCTAGTTTATAATCAGCAGACAGTACTCTAGGTTA a score=-520.0 s hg17.chr17_random 390556 2 + 2618010 GG- s panTro1.chrUn_random 236837339 2 - 240967748 GG- s danRer1.chr17 3332411 2 + 35757233 -GT a score=9111.0 s hg17.chr17_random 390558 63 + 2618010 AGATGCCCAGGCCTGGCGGCCGGCGCACG-TGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCAGG s panTro1.chrUn_random 236837341 63 - 240967748 AGATGCCCAGGCCTGGCGGCCGGTGCACG-TGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCGGG s canFam1.chrUn 84676771 64 - 91062872 AGGCTCCTGGCCCTGGCAGCCTGCACCCGCCCTGCTGTCTGGACCCATCCTGGGGCTCTGCAAG s danRer1.chr17 3332413 57 + 35757233 ------TTATAATCATCAGACGGTGCTCT-AGGCTAGTTTATGATCAGCAGACGACGCTCTAGG a score=-276.0 s hg17.chr17_random 390621 4 + 2618010 --AGAG s panTro1.chrUn_random 236837404 4 - 240967748 --AGAG s danRer1.chr17 3332470 4 + 35757233 CTAG-- a score=1665.0 s hg17.chr17_random 390621 71 + 2618010 AGAGGAGATGCCCAGGCCTGGCGGCCGGCACACGCGGGTTCTCTGTGGCCAGCAGGCGGCGCTGCAGGAGC s canFam1.chrUn 84676835 50 - 91062872 --------CCTCGGGGCTCGGGAGCCA-------------CCCTACAACCAGCAGGCGGCACTGCAGGAGA s danRer1.chr17 3332470 65 + 35757233 ------CTAGTTTAAGATTGGCAGATGGCTCTCTAGGCTAGATTATAATCAGCAGACGGCGCTCTAGGCTA a score=5144.0 s hg17.chr17_random 390692 22 + 2618010 GCTC-AGAAGCAGGGGCCTGGGC s panTro1.chrUn_random 236837407 22 - 240967748 GCTC-AGAAGCAGTGGCCTGGGC s canFam1.chrUn 84676885 23 - 91062872 GCTCGAGAGGCCGCAGCCTGGGC s danRer1.chr17 3332535 22 + 35757233 GTTT-ATAATCAGCAGACGGCGC a score=40061.0 s hg17.chr17_random 390714 346 + 2618010 CTGCTCC-GGGGGAATCCGCCCACCCCACCGCGGCGGCCTCTCCTGAGGTTCCCTAGTGGCCGCGAAGGGTGGGCTCAGGGTGAGGGGTCAGGCCACATCAGTGGGTGCAGGGATGGCTGCGGCCACGGGAGGGCG-TCCAGGGAGGAGGCCGGAGCTCAGGCCCACTCTGCA-CACCCAGCCCGCCA--CCTCCCCCGGCTCTCTCTTCCTTCGTGCACATTCTGGGGCTTGTGCTTCTGCTGTGGTCCCATTTAGCCAACCTGGCCAGCCTCTCATGCCTGCTTCATGGGTGAG-ACGTGGAGGCCAGGTCAGCCACAGACCCCGGGGCACACGCCGCAGCCAGCA---CAGC s panTro1.chrUn_random 236837429 351 - 240967748 CTGCTCCCGGGGGAATCCGCCCACCCCACCGCGGCGGCCTTTCCTGAGGTTCCCTAGTGGCTGCAAAGGGTGGGCTCAGGGTGAGGGGTCAGGCCACACCAGTGGGTGCAGGGATGGATGCGGCCACGGGAGGGTG-TCCAGGGAGGAGGCCGGAGCTCAGGCCCACTCTGCACCACCCAGCCCACCA--CCTCCCCCAGCTTTCTCTTCCTTCGTGCACATTCTGGGGCTCATGCTTCTGCTGTGGTCCCATTTAGCAAACCTGGCCAGCCTTTCATGCCTGTTTCATGGGTGAG-ACGTGGAGGCCAGGTCAGCCGCAGAACCCAGGGCACACGCAGCAGCCAGCACTGCAGC s canFam1.chrUn 84676908 297 - 91062872 TTTCAGCCAGTGGGACCCTCCC------CCGT-GCAGCCC-----------------TGGCTGGAAAGTACGGGCCCAGACGGAGGG--CAGGCTGCGGGACGGGGTGGGGGGGGGG--GTGGTCA---GAAGCTGCCCCAAGGCAGAGGCTGGAGCTCAAG--------GGA-------GCCCTCCAGGACTTCCCTGG-TTTTTCTCCCTCCACGCACATCCCACGTCCAATGCCTCAGGTGTGGATCCATCTTAGCAGCCTGGacagcctttgatgcctgttttacagatgagaaagtcgaggc----tcagTCGCGGGC----AGGCTCACACGGCACCATGCT---CGGC a score=21157.0 s hg17.chr17_random 391060 258 + 2618010 AGGTGGGCGTCTGCGGCCGGGGCCAGCGCAGGGCCCACTGGGCCTCGGAGGGGCCTCCCTGCCGACTCTGCCCCCGTCCTGNTGGCCGTAAGTCCACCCAGAGCGCTCGATCTTCCGTCCACCAGGCCAGGGATGC-----GCGCAGAGTAAGGAtgtgtgtgtctacgcatgtgggggtgtgggtgtgacggggtgtgttctgtgtgagaacatgtgtgtagtgtccacatgtcctctgtgcgtgagtccctgtgtgtgatg s panTro1.chrUn_random 236837780 259 - 240967748 AGGTGGCCGTCTGCGGCCGGGGCCAGCGCGGGGCCCACTGGGCCTTGGAGGGGCCTTCCTGCTGACTCTGCCCCCGTCCTG-TGGCCGTAAGTCCACCCAGAGCACTCGATCTTCCGTCCACCAGGCCAAGGATGCATATGG---AGAGTAAGGAtgtgtgtgtctaagcatgtgggggtgtgggtgtgatgtggtgtgttctatgtgagaacatgtgtgtagtgttcacatgtcctctgtgcgtgagtccctatgtgtgatg a score=2965.0 s hg17.chr17_random 391319 39 + 2618010 tgtgttctgggtgtgagttcatgggtgtgacggggcgtg s panTro1.chrUn_random 236838361 37 - 240967748 tgtgttctg--tgtgagttcatgggtgtgacggggtgtg a score=10402.0 s hg17.chr17_random 391358 122 + 2618010 ctgtgtgagaacatgtgtgtagtgtCCACATGTCCTCTGTGCGTGAGTCCCTGTGTGTGATGT-TGTGTTCTCGGTGTGAGTTNATGGGTGTGACGGGGCGTGTGCTGTGTGAGAACATGTGT s panTro1.chrUn_random 236838783 123 - 240967748 ctgtgtgagaacatgtgtgtagtgttcatatgtcctctgtgcgtgagtccctatgtgtgatgcctgtgtTCTCGGTGTGAGTTCATGGGTGTGACGGGGTGTGTGCTGTGTGAGAACATGTGT a score=5547.0 s hg17.chr17_random 391480 29 + 2618010 GTAGTGTCCACATGTCCTCTGTGCGTGAG s panTro1.chrUn_random 236838906 29 - 240967748 GTAGTGTTCACATGTCCTCTGTGCATGAG s mm5.chr11 169663 29 - 121648857 GCAGTGTCCACTAGGCCTCCGTATGTGAG a score=191.0 s hg17.chr17_random 391509 2 + 2618010 TC s panTro1.chrUn_random 236838935 2 - 240967748 TC a score=15541.0 s hg17.chr17_random 391511 124 + 2618010 CCTGTGTGTGATG----TTGTGTTCTCGGTGTGAGTTCATGGGTGTGACGGGGCGTGTGCTGTGTGAGAACATGTGTGTAGTGTCCACATGCCCTCtgtgcgtgagtccctgtgtgtgatgcctgtgt s panTro1.chrUn_random 236838937 125 - 240967748 CCTATGTGTGATG---CCTGTGTTCTCGGTGTGAGTTCATGGGTGTGACGGGGTGTGTGCTGTGTGAGAACATGTGTGTAGTGTTCATATGTCCTCTGTGCGTGAGTCCCTATGTGTGATGCCTGTGT s mm5.chr11 169692 116 - 121648857 AATGTGTGTGATGTGGTATGTCTTCAATGTGTGAGCATATGCCCATGATGTGATATGTTCTGTGTATAAACACATGTG------CCAGAT---TTCTCTGCATGTATCTCT---TGCCATGCATGTGT a score=1719.0 s hg17.chr17_random 391635 18 + 2618010 tctcggtgtgagttcatg s panTro1.chrUn_random 236839062 18 - 240967748 TCTCGGTGTGAGTTCATG a score=3338.0 s hg17.chr17_random 391692 35 + 2618010 gggtatgatgtgggtatgttctctctgtgggtgaa s panTro1.chrUn_random 236841809 35 - 240967748 GGGTATGATGTGGGTATGTTCTCTCTGTGGGTGAA a score=3768.0 s hg17.chr17_random 391727 34 + 2618010 aacgt--gtgtgatgtggt---tctt-----tgtgaatctctgt s panTro1.chrUn_random 236841844 35 - 240967748 A-Cgtctgtgtgatgtggt---tctt-----tgtgaatctctgt s mm5.chr11 169692 42 - 121648857 AATGT--GTGTGATGTGGTATGTCTTCAATGTGTGAGCATATGC a score=34067.0 s hg17.chr17_random 391761 256 + 2618010 gtgtgacgtggtgtgttctc--tgtgtgagtctgtgtgtctggtgagtgtgtctg-ggtgtgtctggg---tatgtgcgtgctgtgtgtctgtagtatgtgtTC---CTGTGTCTCTCTAAGCTGGT-AGCTTCATCTCTTCCATGTTCTCTGACATTCAGAGGAATTTTCTCACAAATGTGTCCACAACATGGCTGTGTGCCATTTCTCCTGCTT-TGGGGAGCACCAGTGTCTGCAGAGAGAAACGTCCCTGCTCCTGCCCCTGC s panTro1.chrUn_random 236841879 256 - 240967748 gtgtgacgtggtgtgttctc--tgtgtgagtctgtgtgtctggtgagtgtgtctg-ggtgtgtctggg---tatgtgcgtgctgtgtgtctgtagtttgtgttc---ctgtgtCTCTCTAAGCTGGT-AGCTTCATCTCTTCCATGTTCTCTGACATTCAGAGGAATTTTCTCACAAATGTGTCCACAACATGGCTGTATGCCATTTCTCCTGCTC-TGGGGAGCACCAGTGTCTGCAGAGAGAAACGTCCCTGCTCCTACCCCTGC s mm5.chr11 169734 212 - 121648857 CCATGATGTGATATGTTCTG--TGTATAAACACATGTGCCAG----ATTTCTCTG-CATGTATCT------------CTTGCCATGCATGTGTCAGGTATGATCTCTCTGTGTCCT---------GT-GGTTATGT-------GTATTTTCGAATATTTCGACAAACTTCCTCTCATCTGT----ACAATGTAGCTGCAAGCCACTT-------TA-TGAGGAGCAACAGTGTCTGCTCAGTGAAGTGCCCCAAACCCTG------- s canFam1.chrUn 84677283 250 - 91062872 GTGTGCTGTGCAGAGACCCCAGCGTGTCTGTGTACGCGCCATGAGCGTGCGCCTGCGGAGTGTGCGTGCCCCACGTGCGTGTAGTGC-CCTGGAGCGCGTGTG----GTGTGTCCTTGTGAGCCTATAAGTTTCATCTCTTCC----TCTAACACACTCAGACGAACTGTCTCACGAATGTGTCCACAAGATGG-----AACCACGTCTCCTGCTCAAGGAGAGCAACAGCGTGTTCTGACCACGGCGTCGCAGCCCTTCCTGC--- a score=11577.0 s hg17.chr17_random 392017 126 + 2618010 ATTCACGGCATGACCCTGTTTGCCCAGCTTCCCCCCATACACAGCCCCGGACACACCCTCCTGGGGGAATGTGGTGGGCTCCGCACTGACCGCAGGATCTGCCTCTCACCAGGGATTCATATCCAC s panTro1.chrUn_random 236842135 126 - 240967748 ATTCACGGCATGACCCTGGCTGCCCAGCTTTCCCCCATACACAGCCCCGGACACACCCTCCTGGGGGAATGTGGTGGGCTCCGCTCTGACCTCAGGGTCTGCCTCTCACCAGGGATTCCTATCCAC s mm5.chr11 169946 98 - 121648857 ---------ATA----TGCCTGCAGAGCTTCCCTCAGTG---AGGTTC---CATCCCTTAGTGCTGGAAAGTGGTGTAC---------ACAGCAGGTCCTGGCTGGCACCTAGCCCTTCTCTCAAC a score=1919.0 s hg17.chr17_random 392143 20 + 2618010 ACGAAAGGGCCAGAGCAACA s panTro1.chrUn_random 236842261 20 - 240967748 ACGAAAGGGCCAGAGCAACA a score=10116.0 s hg17.chr17_random 392163 70 + 2618010 GCTGGCACATCCCCTTCCTTCCTCCACCGTTCCCACTTATTCTTCAACCA-GCCCTAACCAGGCNGGNAGC s panTro1.chrUn_random 236842281 70 - 240967748 GCTGGCACATCCCCTTCCTTCCTCCACCGTTCCCACTTATTCTTCAACCA-GCCCTAACCAGGCAGGGAGC s mm5.chr11 170222 63 - 121648857 CCTAGCACGGCTTCCTCCTCCC--------TTCTGCTCATTCTTCAGATACACCCCAGCCTGGCAGGAAGC a score=2950.0 s hg17.chr17_random 392233 343 + 2618010 CCAGGTCCCACGGAAAATCTCTATGAGAAAGTAAGACAGAGGGCAGACCTCCGCCGTGGTCCCTGGAGAACCAGTCGGC--GCTGACA-CCAGGAGCAGGAACTTACTCTTTCCCAGAGGCAGGCAGGGACGGTCATCCTTGCCCAGAGGNCTCGNCCTAGAGTGGGGTCCCAGCCCTGCAAGGGACCCCTAGGAAGGGAAAAGGAGCCACTTGTACATCC-TTGCTTCCTACGGAGCCCTCACATGGAGCACATGGCCACTTCGG--TCTGGGTCTCTCCGTGCTGCTCACTGTGC---TGGTGGGGTGTGCTGCGGAGG-TCTCTGGGGAGGTCCCAGGAGCGAGAATGGA s mm5.chr11 170285 330 - 121648857 TTGGGTGCCATTAAGAATTCCCATGAGATATTAGGG-GGAAAACA-ACACCTGAAGGGGCTCCTGGAG--CCAG-AGGCTTGCTGACAACTTAGATAAAGTATCCTCCCCATCTCAGATTCAATTGTAAACTATT----CTGCCCAAAAGTTCACTCCAAG---GAAGACCCAGTCCTTTGGAAGCCCCTTATGAAGA-AAAAGGAGCCACCTATTTGTCTGTTGCTTCCTA-AGAGTCTTCATGAGGATGATGGAGGTGGTTTGGAGCCTGTAGCT-----TAGTGTTTGCAGAGCAAGTGCTGGTATGTACTTCAGAGGCTTTCCAAGGA----CTGTAAGTAAAAATGGA a score=20430.0 s hg17.chr17_random 392576 222 + 2618010 CCAGGCCCAGGGTAGAGGTGCAAGAGGGTCCTGCCCTTGGCTCCCTCCCCCGGCACAGGCCAGTCAAGGTGGAGAGGAGGCCCCAGCTTGTCCAGCTGGCAGAGGCTAGCCAGGGGGACTGACATGGTGTCACTCTAACCCTCATTTTTCTCAGCCCTTCCATTCCTTATGACTT--CTTGCTAGGAGAACCCTGACACCATCCCTGCTGACACTGGAGATATT s panTro1.chrUn_random 236842351 221 - 240967748 CCAGGCCCAGGGTAGAGGTGCAAGAGGGTCCTGCCCTTGGCTCCCTCCCCCGGCACAGGCCAGTCAAGGTGGAGAGGAGGCCCCAGCTTGTCCAGCTGGCAGAGACTAGCCAGGGG-ACTGACATGGTGTCACTCTAACCCTCATTTGTCTCAGCCCTTCCATTCCTTATGACTT--CTTGCTAGGAGAACCCTGACACCATCCCTGCTGACACTGGAGATATT s mm5.chr11 170615 152 - 121648857 CTGGACAAAAAGTTGG--------------------------------CCCAGAATATGTCAAACAAGGCAGAGAAGAGTCCTAGACCTGATCAGT---------------------GCTGAGATGGTGCCTCCCT-CCCTCCCTTCCTCAAAGCCCCTCTGT--CCTGTGACCTTACACCCCAGGACTGCAGTGTCA----TCCTACTGAC------------ a score=43462.0 s hg17.chr17_random 392798 270 + 2618010 CCAGAGAGGCCGATCGTCATTGAAAGGGAATGCTCCGTGAACCCTCTGAGCCCTCTTTGACTTCAGAAGCAATAGTATCACAGCTCACAAATTCAGTAGAAAGTCCGAGTTGCATCAGTTTGGA---AGTCATGCGGTCAGGCTTCCTGTACCCAGAGGGTGATTCAGCCGCAGAAAGCTCTGGGCTGCACCCCACCCACCCCTGGCCTTCAGGGCCCAGCCACATTGAGGCTGCAGGCGAGCCTGGCCCCCATGCCTGAGAGCCAGATTCCA s panTro1.chrUn_random 236842572 273 - 240967748 CCAGAGAGGCCAATCGTCATTGAAAGGGAATGCTCCGTGAACCCTCTGAGCCCTCTTTGACTTCAGAAGCAACAGTATCACAGCTCACAAATTCAGTAGAAAGTCGGAGTTGCATCAGTTTGGATTCAGTCATGCGGTCAGGCTTCCTGTACCCAGAGGGTGATTCAGCCGCAGAAAGCTCTGGGCTGCACCCCACCCACCCCTGGCCTTCAGGGCCCAGCCACATTTAGGCTGCAGGTGAGCCTGGCCCCCATGCCTGAGAGCCAGATTCCA s mm5.chr11 170767 193 - 121648857 CTAGAAATGCTGACCTCCA---------AATG--------------------------------------------------GCT--CAGACTCAGCAGAAAATTT--------TCAG--TGGA---AACCATATGAACATCTTTCCTGGAGTCCAAAGGTGATGCATCACAAGAAAGACCCCAACTTCCCTCCACCCA-TCCGGTCCCTCAGAGGTCGGCCATGCTCAGGGTGC-----ATTATAGTCCCTATAACCAAGATTCAAATGCTA s canFam1.chrUn 84677566 232 - 91062872 CCAGAGAAGGTGACGGCTCTTGAAAGG-GGTGCTCGGCGAAAGTCCTCACCTCCCTCTGCTTCCAGGAGCAGCAGTAACTTTGCT--CGTATTCAGCAGAAAGCCA-AGCTGCCTCAGTCTGGA---GGTCATGTGGCCGGGCTTCCTGGAGCCAGAGAGTGACTCAGCTCCAGAAAGCTCTGAGCTGTACCCCACCCAC--------------------CCACACCACGGGTGT------GCCTGGCCC--------GGCGCGCACATTCTG a score=34727.0 s hg17.chr17_random 393068 271 + 2618010 TTCCCTGGCAGCCTCACCTTGGATCGGACAGGGAGGGATCCTAGGACAC-CAGCC-TCGTCTATCCTCCCTGGGACAC-CCTAGAACCTCACAGCCTGTGGGAAACACCAGGGCATGGAGGGTCAAGCCTACAAAATCCCCCAGTAGGTGATTAGGATAAGGTGAGCACTGGCCCTAGCTGACTCAGGCCAGCC----CCCCAAGCAGCCAGACCACGTGAGAAGTGAT-GGCCACACANTGCTCTGGGTGTCTCAAGGAAAGTCCANGAGCAGTNGGC s panTro1.chrUn_random 236842845 270 - 240967748 TTCCCTGGCAGCCTCACCTTGGATCGGACAGGGAGGGATCCTAGGACAC-CAGCC-TTGTCTATCCTCCCTGGGACAC-CCTAGAACCTCACAGCCTGTGGGAAACACCAGGGCACGGAGGGTCAAGCCTACAAAATCCCCCAGTAGGTGATTAGGATAAGGTGAGCACTGGCCCTAGCTGACTCAGGCCAGCC----CCCCAAGCAGCCAGACCACGTAAGAAGTGAT-GGCCACACAATGCTCTGGGTGTCTCGAGGAAAGTCCAAGAGCAGT-GGC s canFam1.chrUn 84677798 243 - 91062872 TTCCCTCGTTGCCTCGCCTGACCTC--------------CCCAAGACACGCTGCCACCAGCTGCCCTCGCCAGGGTGCTCCCAGCACCTCCCAGCCTCCAGGAAGCG-CAGGGCATGGAGGCTGCAGCCTGCAAAGCACCCCCGCAGGCGATTAGGACAA-----------GCCC---CTGACTCAACACCCCCTCTGCCCCAGAGAGCCAGACAA----GGCTGTGTTCGATCAAACA---CTCTGGGTATCTCTCGGGAAGCACCCGGGTGGCGGGC a score=382.0 s hg17.chr17_random 393339 4 + 2618010 ACTC s panTro1.chrUn_random 236843115 4 - 240967748 ACTC a score=103749.0 s hg17.chr17_random 393343 970 + 2618010 CGGGCTGCATCCTTGGAGTAAGCACAGAGCAAGACCCCAGCATGCTTTGCAGACCCCGCCTTATGAGCCCTGCACCCCACTGCTCCGGGAG-GGGTCAGCACCCCCATGCCAGGG-----CTGGTTTTCGGGGTGGGTGCCTGGACAATCTGAAGGACCTTTCGGCCACAAGGTGTTGAGAACTCTGCAGAGGATGCTGGGGATTAGCACAACAAGCTCTGCTCCTTC-AGGCTGTGCGAGGCCTCATGAAAGCTCCTAAAAATCAGAGGAAGGGCCATGGCAGAGCCTGGGACAAGTGGGCAGCTCACAGAGGGGACTGGGTGCTTGCCATTAGCCCAGACTTCTCCCACTGCTCCTGC-------------------CTCAACTGCTACTGCCCGGAGTCTAAGCCCACTTTGTTGACAAGTACCCATTCTATAGAGAG-CCTCGCCTAACTCCAGGTAGAGGCAGAAAAG------TGTGTGTAGATCAAATGGCCCAGCTGGCAGCAGAGCCAAAAGTCAT-GCTTACTTGCTGGCCA-----------------GCCTTGCACAAGGCACC---AAGGGTCAC-----CTCTGCA-----------GGCTTCAGATC-CTGCCCTCTGTGAACAGTCAAAAAGAAGGTGTCAGAAGGAGCTAGAGGATGCAAGGGTGGCCAAGGGGCACAGAGGAGGGTCAGGTTACACTGGGAGGGAAGAGAGGCAGCCTTTGCATTCTCTAGGAGAAGCAGGGCGGGAGACTTTGGAGCCCAGCTCCCTGATGGGACATATGGGAACCTGCGGGGACAGGAGAGTGTCTTTGATAGGCGAGCCCAGTGCCTCTTACCTTCAGGAGGGCGCCTGAGCTGTGAAGTCTGCCCCTGTTGCTCAGAGATAGTTCCCTCCAGCAGGAAAACC-TCTTTGAGGTGAGTTACGGCTTCTGGAGG-CACAAGGA-------------TGGGCCGAGGTCA-CCAGGCCTTGCCTGTCCACCTTACCTACCCTGAAGTGCATGACCTTTCTTAG-GGACAGAGCCTCTCT s panTro1.chrUn_random 236843119 989 - 240967748 CAGGCTGCATCCTTGGAGTAAGCACAGAGCAAGACCCCAGCATGCTTTGCAGACCCCACCTTATGAGCCCTGCACCCCACTGCTCCGGGAG-GGGTCAGCACCCCCACGCCAGGG-----CTGGTTTTCGGGGTGGGTGCCTGGACAATCTGAAGGACCTTTCAGCCACAAGGTGTTGAGAACTCTGCAGAGGATGCTGGGGATTAGCACAACAAGCTCTGCTCCTTC-AGGCTGTGCGAGGCCTCATGAAAGCTCCTAAAAATCAGAGGAAGGGCCATGGCAGAGCCTGGGACAAGTGGGCAGCTCACAGAGGGGACTGGCCGCTTGCCATTAGCCCAGGCTTCTCCCACTGCTCCTGCCTCCTCCCACTGCTCCTGCCTCAACTGCTACTGCCCGGAGTCTAAGCCCACTTTGTTGACAAGTACCCATTCTATAGAGAG-CCTCGCCTAGCTCCAGGTAGAGGCAGAAAAG------TGTGTGTAGATCAAATGGCCCAGCTGGCAGCAGAGCCAAAAGTCAT-GCTTACTTGCTGGCCA-----------------GCCTTGCACAAGGCACC---AAGGGTCAC-----CTCTGCA-----------GGCTTCAGATC-CTGCCCTCTGTGAACAGTCAAAAAGAAGGTGTCAGAAGGAGCTAGAGGATGTAAGGGTGGCCAAGGGGCACAGAGGAGGGTCAGGTTACACTGGGAGGGAAGAGAGGCAGCCTTTGCATTCTCTAGGAGAAGCAGGGCGGGAGACTTTGGAGCCCAGCTCCCTGATGGGACATAGGAGAACCTGCGGGGACAGGAGAGTGTCTTTGATAGGCGAGCCCAGTGCCTCTTACCTTCAGGAGGGTGCCTGAGCTGTGAAGTCTGCCCCTGTTGCTCAGAGACAGTTCCCTACAGCAGGAAAACC-TCTTTGAGGTGAGTTACGGCTTCTGGAGG-CACAAAGA-------------TGGTCTGAGGTCA-CCAGGCCTTGCCTGTCCACCTTACCTACCCTGAAGTGCATGACCTTTCTTAG-GGACAGAGCCTCTCC s canFam1.chrUn 84679108 806 - 91062872 CAAGCCTCATCC-TGTTGAAAGCAGAACGCGAAGTCCAGGGCCACCGTGCAGGCCCTGCGCCGAGAG-CTTCCATCCACCTGCTCCAAAAGCAGGCTACCACCTGCACACCCTGGATGCCCTGGTTCT----GCGGGTCCCTGGCTACTCT--------------CC----GGTGTCAAG---------------GCTGCGG-TCAGCACAGCAAACCCTGCTCCTTCTGGGCTGCA-GAGTCCCCACG---------------CAGCGCAGGG------------------------GGGC---------AGGGGAGGGGCCGCCACCCTCTG---CAGCCTCCCTACACCACGGCC---------------------TTGACCTGCCGCTGCCCTGAGTCCAAGCCT-CCTTGTTAATAAGCAGCCATTCCTGCGCGCGCCCTCACCTAGCTCCAGCCAGAGACGGGAGGGAGAACCTGAGCTTTGATGGAACGGCCCGGCTGCTGGCAGGGCCCAGAGGGTTAGCCCGCTTGCTGGCCACCTGGGGGCCCTTCCTCGATTTGCAAAATGTGCCTCTGAGAGTCGCAAACACTCTACCCAGAACAGAGTGCCTGCAGGTCACCGCCCTCC-TGCACAGCCAGAGAGAAGATGCTGGAAG-----------------------CAATGAGCAC-------TGCCaga-------gggatggaggagaggc----------------aggaggggcggggaggg------------------------------------------gtgaggaggggCA---------------------------CCCTTCTTCTCAGAGG-----TTGAG-GGTGGGG---------GTTGCCTGCAGACAGTCTCCTCCATCAGGAAAACTGGCATCTCGTGGAGTTGCAGCTTCTGGAGGACACAGTGGGAGAGTTACAGCTGGGGCAGGGGTCATCCCTGCCGCGGCCACCCGCCTGACCTACTGGGATGCTCCTGGCTACTCTGGGTGGGCTGGGCCGCCCT a score=30109.0 s hg17.chr17_random 394313 331 + 2618010 AGTTAATCTTAGAGCCTGGCCAGGAGCCCAGGATGGGGCAGCATGGGGCACAACACTTACTAGATGGTCAGGCGAGGGGAGCAACTGGGACCCTCCCCTCCAGTTCNANCCAtgtgtgtcatgtatgtgcatgtacatgtgtgtatgtaatgtgaagtcagatgtgtgtatgtgt-gcatatgcaaggacatgctaatgtgtgtgtgcatgtacacgtgtgaatctgtgcaagcacatncaagtgtgcatgggcgtggacatgtatgtgcatgcatgtgGAAGTAAGTGTACAGGTACAGTCTGAATCtgtgtgtgcacacacaagtgtgca s panTro1.chrUn_random 236844108 332 - 240967748 AGTTAATCTTAGAGCCTGGCCAGGAGCCCAGGATGGGGCAGCATGGGGCACAACACTTACTAGATGGTCAGGCGAGGGGAGCAACTGGGACCCTCCCCTCCAGTTCGAGCCatgtgtgtcatgtatgtgcatgtacatgtgtgtatgtaatgtgaagtcagatgtgtgtatgtgtggcatatgctaggacatgctaatgtgtgtgtgcatgtacacgtgtgaatctgtgcaagcacatacaagtgtgcgtgggcatggacatgtatgtgcatgcatgtggaagtaagtgtacaggtacagtctgaatctgtgtgtgcacacacaagtgtgca a score=2492.0 s hg17.chr17_random 394644 26 + 2618010 tgggtgtgggcatgtgtgtatgtgca s panTro1.chrUn_random 236844617 26 - 240967748 tgggtgtgggcatgtgtgtatgtgca a score=131045.0 s hg17.chr17_random 394670 1145 + 2618010 tgcatgtgga----agtgtggaagtgtacaggtacagtctgaatctgtgtgcacacataagtgtgcatgggtgtgggcatgt--gtgtatgtgcatgcatgtggacgtgtgtgagtTGCCCTAGCACATGTTTGTACATATGCTTGTGTGCA--CCCATGCTAGGCTGCTCTCCCTCCTGGTTCTCTTTCAGGACAGGCCAAGTGAACCAGGGCGAGCTCTTCTCTCCCTCTGACGGCCCCTCCACAGGAGAGGGACCTGGGACCAAGGTTCCTTCAGCCATCAGACCCTAAGT----CTCAGGGCACAGGGTCAGAAAGCTTCTAAGGACCCATGAAAATATAGAAA----------------------------------CTGGGTGAAATTAACTCTTATTGGCCCGACATATGAAAAGAAAATTGCTTTTGAGCTTCCAGGAGATCTTCTC----AGGTTTTGTTTTGGGGATTTCCTGGGAAGGGCATGTTTCCAAACAAGACTCTTGCCGTCTGCTCCCCCGGAGCTC------------CCCAACCAGCCAGGAGAGGCCACTGG-CAGGGAAGAAGGTCCAGCCCAGCACAGAC--TCCCCAGGGAGGGCCCCAGCCCAGTGGAAGGACCATGGAAACCATGTCAGTCTCCCTCAGCGGCTGCCCTGGGTTGACATGTCCCCTTAGGGATCTCAGGCTCTCAACCCTCTAGTCAATTCTGAGCTGAGTTTTTCTGGAGCTTTATATTCAACT--CTGACTTTGCTTCCC-TTCACCTCTACTCCCCACCCTAGAAATAGAAACCTGAGGTCAGGAAGTGCTGAGGGTCCTTGGGTTTGGTGTCGGGGAAGACAC--CGTGCT---------GACTCGAACCCACTAGGCCTGGAGCCCAAAAGTCCCTTCTCTGTGACCTGCGACAAGCCTCTACAGCCACGTCTCCTTCCCTGTGGTAACCGAGTGACACCAATTGGCTCCCAGCCACCGCTGGGCCTCAGGCAGTTGCAGTGGCTTCGGCACTGGCTTTGCTGAGCCAGTGACAGCGACGGCACCTCCTG-----GATGTGAAATGTGCCAACACCCTGGCCTCGGGGACCGTACGGCGTGGTGTGAAATTTCTGTTTTAACGCTCCATGACCACATAGGTCTTGGCTTTTTATGAGTAAAGCAGAGACCGTGTTGTACCCAAGCT---CTCTGGGTGGCACCCACAGCTTC s panTro1.chrUn_random 236844643 1148 - 240967748 tgcatgtgga----agtgtgtaagtgtacaggtacagtctgaatctgtgtgcacacacaagtgtgcatgggtgtgggcatgt--gtgtatgtgcatgcatgtggacgtgtgtgagtTGCCCTAGCACATGTTTGTACATATGCTTGTGTGCA--CCCATGCTAGGCTGCTCTCCCTCCTGGTTCTCTTTCAGGACAGGCCAAGTGAACCAGGACGAGCTCTTCTCTCCCTCTGACGGCCCCTCCACAGGAGAGGGACTTGGGACCAAGGTTCCTTCAGCCATCAGACCCTAAGT----CTCAGGGCACAGGGTCAGAAAGCTTCTAAGGACCCATGAAAATATAGAAA----------------------------------CTGGGTGAAATTAACTCCTATTGGCCCGACATATGAAAAGAAAATTGCTTTTGAGCTTCCAGGAGATCTTCTC----AGGTTTTGTTTTGGGGATTTCCTGGGAAGGGCGTGTTTCCAAACAAGACTCTTGCCTTCTGCTCCCCCGGAGCTC------------CCCTTCCAGCCAGGAGAGGCCACTGGGCAGGGAAGAAGGTCCAGCCCAGCACAGAC--TCCCCAGGGAGGGCCCCAGCCCAGTGGAAGGACCATGGAAACCATGTCAGTCTCCCTCAGCGGCTGCCCTGGGTTGACATGTCCCCTTAGGGATCTCAGGCTCTCAACCCTCTAGTCAATTCTGAGCTGAGTTTTTCTGGAGCTTTATATTCAACT--CTGACTTTACTCCCC-TTCACCTCTACTCCCCACCCTAGAAATAGAAACCTGAGGTCAGGAAGTGCTGAGGGTCCTTGGGTTTGGTGTCGGGGAAGACACACCGTGCT---------GACTCGCACCCACTAGGCCTGGAGCCCAAAAGTCCCTTCTCTGTGACCTGCGACAAGCCTCTACAGCCACGTCTCCTTCCCTGTGGTAACCGAGTGACACCAATTGGCTCCCAGCCACCGCTGGGCCTCAGGCAGTTGCAGTGGCTTCGGCACTGGCTTTGCTGAGCCAGTGACAGCGACGGCACCTCCTG-----GGTGTGAAATGTGCCAACACCCTGGCCTCGGTGACCGTACGGCGTGGTGTGAAATTTCTGTTTGAACGCTCCATGACCACATAGGTCTCGGCTTTTTATGAGTAAAGCAGAGACCGTGTTGTACCCAAGCT---CTCTGGGTGGCACCCACAGCTTC s mm5.chr11 171947 1032 - 121648857 TGTATGTGGACATGAGCATGGATGGGCTCGTGTATAGTC-AAATGTATGGG-----ACAGTCCTGTCTGAGCATGCACATACAGGTGTATATGCATGGGTGTGCATGTATAGAGGCTATATGAGTAAATGAATGCATGTGTACCTGGGGGCAGGCTCATGGTG-----------CTCCTGGT----------------CCAGGTAAGCAAG--------CAATCCTTCTTCTGAAAAATACCAGCCAAGCAGAGGGTCTGAAGCCTTGGTTCTTCTGACAATCAGAATCTAAAGCTCACTCAGGGCACAGAGTCCATGAGCTTCTAGGAATCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAATAAAAAATTGAACCTAGAGAAAAATAACTTCCACTGGCTCAAAATAT-AAAAGAACATTGATTTTGATCTCT------ATTATCACACCAAGATTTTGTTTGGGGGATTCACTATAAAGTATGCATTCCTA---GAAGCCCCTCCAGTTTAC-------GAACTCTTCACATCAGCACTTATCCAGCCGAAAGAAC--------CAGGAAAGAAGGGTCAGTCCAGGGTGAGCAATCTCCA------GCCCCAGCCTACCGCAG----------------------------CAGCGGCTG--GTAGTTCTGCATGTCCTCTTAGGGACATCA--CTGCCGTTTTTCTAA-CACCTCACAGTCAAGCT-------AGTTTTCTAGCAAACTGGCTGTCTGGGCTCTTTGCTGACCCTTCCACCCCATCCTAGCAATGGAAACCTGAAGTCAGAGAGTTCTAAGGGCCCTCAGGCTTCAGGTAGATGAATGAGC--CGTCTCTGCCCACAGAACCCAAACCCAGTA-----GAAGCCACAAGCTCACTTTCCTCTGA----------------ACA----------------TATGGTAACCTAGTAGT----------------------CTGAGCTTCTAA----------GGTCTCAGCACCCATTTTCCTAAGCTAATACAAACCAAGCAAGCTTCTGACACAGTCAGAAAATGTGCCAGCAGCCTTG----GGTGACTGTATAGGACATTGTGAAACATCGG-------------TGACCACACAGGCTTTGCTTCTTCAGAAGTTAAACAGAAGCCAGACCATAGATTGGCCATGCTGTACATGATACCCACAACTTC a score=106585.0 s hg17.chr17_random 395815 737 + 2618010 CTCAGCGGGGTAA--CGGTGACGGGTGGACAACTGGCCCACAGGCA-----AACTGCAC-GTCCCCCACGGCGAGCATCTCTGAGCTGCACTGACCAGTTCAGGCCCATGCGTCACCGGCATTTTTCTGAGCCAGCTCCTCTGGTTCATG-AGAAGGTCTGAATTCAAGAAATGAACGCCCAGCAATTAGCAATGTCCACAGAATCAAAGGAGCATGGTTTTAGTTGTCCTCCCAGGCAGCTTTGCCAGTCCGGGTATGAGGTAAAGCCAGAGGGACCCTGCCTCACCCACGCGCCCCAAGAGGGGTCCAAGGACCACCGACTGT-CCCCACTTCCCTGGAACTGAGGATGAGGCTGATTCATGTGTTTCCTGTGACGGCCACGACATCATCATATCCGCTCGGAGAACTATTTTTAACTGATTTATGTATTTCTTGTATGAGGAAGACACCAACTTCTCCTTTAGTCAGTTTTACAGGAAAGTACTGCAGCTGTGCTCAGCTCAGCAATATTAATCGCC---ACAGAGC---------ACCCTCCGAAGTCTTGC------AAAAATTAATAAAGTTGGAAATATGAGTCAGGTTTGGATGCCACTCATTCTGAAAAAGAAGAAACTCAATAATAGTTACCTTCTCCTGTAGAATCAACGAGCCCAGTTTGCGAAAGAGCACCCTGTGTCTTTAAA---TTTCCGTGGCGTGCCCACAGAGGAAGGTGTTCCGACCTCTGCTGCCGCTGCAGCTCCGGGGCACTGAC s panTro1.chrUn_random 236845791 737 - 240967748 CTCAGCGGGGTAA--CAGTGACGGGTGGACAACTGGCCCACAGGCA-----AACTGCAC-GTCCCCCACAGCGAGCATCTCTGAGCTGCACTGACCAGTTCAGGCCCATGCGTCACCGGCATTTTTCTGAGCCAGCTCCTCTGGTTCATG-AGAAGGTCTGAATTCAAGAAATGAACGCCCAGCAATTAGCAATGTCCACAGAATCAAAGGAGCATGGTTTTAGTTGTCCTCCTGGGCAGCTTTGCCAGTCCGGGTATGAGGTAAAGCCAGAGGGACCCTGCCTCACCCACGCGCCCCAAGAGGGGTCCAAGGACCACCGACTGT-CCCCACTTCCCTGGAACTGAGGATGAGGCTGATTCATGTGTTTCCTGTGACGGCCACGACATCATCATATCCGCTCGGAGAACTATTTTTAACTGATTTATGTATTTCTTGTATGAGGAAGACACCAACTTCTCCTTTAGTCAGTGTTACAGGAAAGTATTGCAGCTGTGCTCAGCTCAGCACTATTAATCGCC---ACAGAGC---------ACCCTCCGAAGTCTTGC------AAAAATTAATAAAGTTGGAAATATGAGTCAGGTTTGGATGCCACTCATTCTGAAAAAGAAGAAACTCAATAATAGTTACCTTCTCCTGTAGAATCAACAAGCCCGGTTTGCGAAAGAGCACACTGTGTCTTTAAA---TTTCCGTGGCGTGCCCACAGAGGAAGGCGTTCCGACCTCTGCTGCCGCTGCAGCTCCGGGGCACTGAC s mm5.chr11 172979 621 - 121648857 CC-----AGGTAA----------GGGGGAGCATGGGCCCAGAGGAA-----GCTTGAAG-GC------TGTGGAGTATCCA-------------------CACACACATATGT-GCCCCCCTCTTCCCAGACCAG---CTCTGGTT---------AGTCTGAATCCAGGAAGCAAC--CCCAGCCTTCAA-AAGGT--ATGGAAGC-------CACAATGTTAGGTGCTTCCTTGGGC------------CAGGGTATAAGGTAAGGT--GAAGAACT--------TCCAAACAGCCAAGAAAGAGCCCCAAACCCATGGACTGT-CCACATCTTCCTGT------------GACTGATTCATGTGTTTCCCGTGACAGCCGCAGCAACATCACATCCGTTCTGAGGACTATTTTTAACTGACTTATGTATTTCTTATATGAGGAAGGTATCAGC-----------TCATTTCTGCAAGAC--TTCTGCAA-TGTGTTCATGTCAGCAGTATTGA-CACCAGGATGGAGC--CAGTCGGGCCTTCAAAAATCATGC-------AAAATTTATGAACTTAGAAGTGTGAGTCAGGCTTGCAGGCCACTCATTTTGAAAAAG--GAAACTC---AGTTGTCAGGTCTTTCTGATTAATAAACACATCCATCTTGAGAGAGAATGCACTGTTTCTTTAAAACCTTTCAGAGATG---CCATGGAAGAGAGTTTATGGATGGATACTGGCTCTACC---------CACTAAC s canFam1.chrUn 84681722 631 - 91062872 CCCGGCGGAGCGGCACAGTGAC---------ACGGCTCCACGGACACCGCCAGCTGCGCTGTCCCCAGGGAAGAGCGGCCCTGGGCCGG-----------CGAGGCCTTGCAC-----GCGTGTCTTTGGGGC-----CCCTGTGCTAGGCAGGGGGTCTGAG-CCAGGAAATAAAGAGCCGGCAACAACCAATGC--------------------TGGCTTAGCCATCCCTCTGACGGCCCCGGCCTAGCCCGGTGCCCGGTGGACGCGCAGGGACC----TCCTCCGAGTCCCCCGGGGAGGCGCCCAGAGGCCCAGGACTCTGCCCCACGGCCCTGCCAGTGGCGATGAGCCTGACTCACGTGCTTCCTGCGACAGCCACCGTATCATCACATCCGCTCGGGGAACTATTTTTAACTGACTTATGTGTTTCGTGTCCGAGGAAGGCACCGAGTTCTGTTTTCATCCAT-CTACAGGGAAGTGTTGCAACCGCTCTCAGCTCAGCAGGACTCG-CCCC---GCACAGCGGCGGGGGCGCCCGGCTGGGCAACACGGCCTCAGAGAGTAATAAAGTCGGAAATGTCGGGCAGGC-TGGCCGCCACTCATTCCGCGGAGAGGGACGCTCACCATT-----CCCTCCCCCGTGGGCCCCACAAGCCCA------------------------------------------CGCGCCT-----------------------------CCCGGCCGCCTCCCAGCCCTGAC a score=11504.0 s hg17.chr17_random 396552 106 + 2618010 CACACAGAGCTGGTTTCTGCACTTGCATCGCTTGCCCGAGAGCTAGTCACCGCGGGCGTG-GGCGAGGCTGCCAGGGGCCACCTGCCTGCCAGAGCCAGGGTGCCTA s panTro1.chrUn_random 236846528 106 - 240967748 CACACAGAGCTGGTTTCTGCACTTGCATCGCTTGCCCGAGAGCTAGTCACCGCGGGCGTG-GGCGGGGCTGCCAGGGGCCACCTGCCTGCCAGAGCCAGGGTGCCTA s canFam1.chrUn 84682353 94 - 91062872 GGCGCCCAGCGGGTTTCCGCGCGGGGAACGCCTGGTCGTGGGGACGGCAGGGCTGCCGGGCGGCCGAGGGACCAAGGGCCACCTG-----TAGCGTCCG-------- a score=187299.0 s hg17.chr17_random 396658 1647 + 2618010 TCTTTAAGGCCAGGGGCTCCTGAGGACACAGACACTTCCCTCCTCTTTCAGACAAGGACAAGCTCAGGGA--------CATGGGTG---GTTTGGGCTCAGGCTGACCGGGAAAGACACG------TAGAAAGT-TTGGTGTGCGCTCTGGGTTGTGGGGGCCCGGCGGGAGGGTGGGCTTCAGGATCCCGTCCCAGGACGCGTTCATTCAGCGGCACTCACACCCCCAGCACCTGCTCCCGGCGGGTGCCG---AGGCTTCTTTCACTCTTCTTAGCATCTCCCCATCACTCAC-TTGACTCCAACCAACAGCCACTTATG------------------------------------------------------TACCAGC--TACGCGCCAGGTTGCTGAACAGCTCTGAGCAATTA----AAGGGCAGCCAGGAGCAGCTGGGAGAGGAGGGGCTGGAGGAGGAAGAGGGGT------CCAGGACCCAGGGGCTCACGGG-GCATCCCGAAGTCTTTGTGGAGACCTAGGGTTGGGGCTGCAGCAGGGGGT--CGGGGGGCAGCCAGAGATCCCGGTAGACCCGGGAGGGGCCTG-----ATCAAGGAG--AAGGAGGGGCCACAGAGCCAGGGTC-------AGGACAGACTGTGAGGGGGCCTCTTGTTG------------GGACAGCGTC---CCCTCGGAGC-AAGAGCCCGGGGCGTGTGGCCGCCTCACTGTGACCTCCGGCCGTGCAGNCCTCTGGGNAGGGTNGGAGAT---GTTTTCCCCTTCTCAGAGCACGCAGGTGTTACCTGCCCACAG--------------------AGTAGGAAG----------TGGGG------------TGCTGTCACCTGCACCGCACAGGTGAGGAAGCTG-----------AAAACCCAAG------------------------------------ACCCAAGCCATTTGGTCTCACTC------------------TGGCTGAATCACCTGGAGGCTTTGGGN-------------------------------AAACAGATTTTCTTCCCCCTT-------CCAGCCTTACC-------------------------GCCACCCT--------CCTCTCTTCTAGAAGAGGCAAGAAGAAGCGGGGGTGGGGGTGCAGGCCGAATTGCCTGGAGGTTAGGGGGACCCTCAGCACNTGAGTCAG-GGCTCTGTGAGACC-----CCCTGGTT-CTTCGCTCACTGTGGG-------------------------------------------CTGAG-------------ACGCAAGCTGAGTC---------GTCCACAGGAAGATACCCTCTtactctgaacaaccactctttcaaag----aggacactgaggctcagagaggctccccaaagcaatg----gccagccaccatgggcaggacgtggactccggcccaggaagcctggctccagaatc-atgctccaggcctntaagctgtaATTTGTGTCCTCCAGGGCTCACAATATNTAAGA-TTTAATGTGG-AAAAATGGTGCTATTCTGTCTCACCCCATGCCCCAAAATGAACTTAAAGGCaaaaaaaaaaaaaaaaaaaaagaaTAATTATAAAG--TTTGGAAGAAAA----TACAAGAGCATTTTGGTAT----------------AAAAATGCAAAATCCAAAGCCTTAAAGGAAAC--------Catttgactacttaaaa-----tttaaaa-----acttttatgtgatgaaaag--aacaaccttaaaaaggtaaaataataagcagcagactgggaacgaatatctgcaatgtaaacacaaagtactgatattcatcatatataaagaactcccacaaatcaacaagaaaaaagcaaatgactagctagaaaagtggtaaagggtaaaaa--cagaAACATAGTCAAATAAACTAATGAATATCACAAAATATCCAACCTCCCTATTAATCATAGAAATAAGAAATTGAAAAATATTTTATGACTAAA s panTro1.chrUn_random 236846634 1631 - 240967748 TCCTTAAGGCCAGGGGCTCCTGAGGACACAGACACTTCCCTCCTCTTTCAGACAAGGACAAGCTCAGGGA--------CATGGGTG---GTTTGGGCTCAGGCTGACCGGGAAAGACACG------TACAAAGT-TTGGTGTGCGCTCTGGGTTGTGGGGGCCCGGCAGGGGGGTGGGCTTCAGGATCCCGTCCCAGGACGCGTTCATTCAGCGGCACTCACACCCCCAGCACCTGCTCCCGGCAGGTGCTG---AGGCTTCTTTCACTTTTCTTAGCATCTCCCCATCACTTTC-TTGACTCCAACCAACAACCACTTATG------------------------------------------------------TACCAGC--TACGCGCCAGGTTGCTGAACAGCTCTGAGCAGTTA----AAGGGCAGCCAGGAGCAGCTGGGAGAGGAGGGGCTGGAGGAGGAAGAGGGGT------CCAGGACCCAGGGGCTCACGGG-GCATCCCGAAGTCTTTGTGGAGACCTAGGGTTGGGGCTGCAGCAGGGGGT--CGGGGGGCAGCCAGAGATCCCGGTAGACCTGGGAGGGGCCTG-----ATCAAGGAG--AAGGAGGGGCCACAGAGCCAGGGTC-------AGGACAGACTGTGAGGGGGCCTCTTGTTG------------GGATAGCGTC---CCCTCGGAGC-AAGAGCCCGGGGCGTGTGGCCGCCTCACTGTGACCTCCGGCCATGCAGGCCTCTGGGGAGGGT-GGAGAT---GTTTTCCCCTTCTCAGAGCACGCAGGTGTTACCTGCCCACAG--------------------AGTAGGAAG----------TGGGG------------TGCTTTCACCTGCACCGCACAGGTGAGGAAGCTG-----------AAA-------------------------------------------ACCCAAGCCATTTGGTCTCACTC------------------TGGCTGAATCACCTGGAGGCTTTGGG--------------------------------AAACAGATTTTCTTCCCCCTT-------CCAGCCTTACC-------------------------GCCACCCT--------CCTCTCTTCTAGAAGAGGCAAGAAGAAGCGGGGGTGGGGGTGCAGGCCGAATTGCCTGGAGGTTAGGGGGACCCTCAGGGCCTGAGTCAG-GGCTCTGTGAGACC-----CCCTGGTT-CTTCACTCACTGTGGG-------------------------------------------CTGAG-------------AAGCGAGCTGAGTC---------GTCCACAGGAAGATACCCTCTTACTCTGAACAACCACTCTTTCAAAg----aggacaccgaggctcagagaggctccccaaagcagtg----gccagccaccatgggcaggacatggactccggcccaggaagcctggctccagaatc-atgctccaggcctctaagctgtaATTTTTGTCCTCCAGGGCTCACAATATCTAAGA-TTTAATGTGG-AAAAATGGTGCTATTCTGTCTCACCCCATGCCCCAAAATGAACTTAAAGGC------aaaaaaaaaaaaaaagaataattataaaG--TTTGGAAGAAAA----TACAAGAGCATTTTGGTAT----------------AAAAATGCAAAATCCAAAGCCTTAAAGGAAAC--------Catttgactacttaaaa-----tttaaaa-----acttttatgtgatgaaaag--aacaaccttaaaaaggtaaaataataagcagcagactgggaacgaatatctgcaatgtaaacacaaagtactgatattcatcatatataaagaactcccacaaatcaacaagaaaaaagcaaatgactagctagaaaagtggtaaagggtaaaaa--cagaaacatagtcaaataaactaatgaatatcacaaaatatccaacctccctattaatcatagaaataagaaatt-aaaaATATTTTATGACAAAA s mm5.chr11 173680 1620 - 121648857 TCCTTGAGGCCTGAATATCTTGAGGGCACA---------TCTCCCTTTCAAACAAATGTGCACTCAGG----------CCTGCATGAACATCCAGGTCCAAGTCAAGCCTGGGGGACTTG------TAGAGATTGTCTGTCAGTGCCCTGGGTAGCAGTGGCCTGG---------GAGCATCAGGA--CTGTCCC---ACTGACCTGATCAGTGGTGCCTGTCCTCTTAACACCAACTCTAAGCCAGCTCCAGACAGACTCCCTTCTCTTCTCTGG-----TCTCCAT-----GC-ATGCTCTCAGCAGGAGGCTGCCTAC---------------------------------------------------------CCAGC------------------------CTTTGAACAATTA----GCAGACAGCTACAACAAGCTAGG------------GGAAGAGGACTAAGG-----------AGACCCAGAGGCTCAAAGATGCCTCCTAAAG-CTTTGTAAAG---TCGAGTTTGGGATTGTGCA--AGTT--CAGGCAGC----------CCCGATAGGCCTGAATGAG--------------AGCAA--GAAAAAGTGCTACAGAGCAGCAGTCCAACTAGAGGAGAGTCTAGAAGGGTGTCCCTCAATGCCTAGCCAGCAAGGAAGACCAT---CATGTGCCTC-CAGAGCCCAGTG---GTAGTCACAGGACTAGAA-------------AGGCCTGTGGA-------GTAAACACAGTTTCATCCTCATCTGGGT-----GGTGTTATATA-TTATAG--------------------AATAACAA------------GGAG------------CATTGTGGACTCTGCTTAGCAAATGAGAAAGCTG-----------AGA-------------------------------------------CACTGGGCTACACATCTCCAAAC------------------CTGCT------CCTAGAGCCCCCCAGC-------------------------------AAGCATGGTAGTTTCCATCTTAGAAGCCCCAGGCTGGCCAGAGTCTGAGTCTCTTAAAACCCTTGGCAGCCTGAGGTTTATCTCTATCCCAG----GACACTAGGATGGAAGGGCCATGGTGGAAGAGGGACTAAACTAAGTTCTATGTTGTTCTCACCAAGTTTCCTAGAGGCTTTGAGAAATCAGTTTCTCTCCTTGCTTTCCTCTCTGTGGGAAGAAGTAAGATGGCAAACCTAGTAAATGGTTGGAGGCAGGACCTGAGCCTGCTGATAGTCACCAAAGCTGAGACACCGGAAGGGTTCACCAGAGGGTATTGTTTTCTTCGGTACAACCATGTTCTTGGAGAAGAAGGAACTAGAGGCTCAG-------CCACCAGCCAGCA----CCCAGCCTTAAT--GCAGGC--TGGACTCCAGCCCAGGAAG-TTGGCCCCAGTCT-----CTCCAGCCCTCTAGGCTATAATTTGTGTCCTCCAGGGCTCAAGATAGCTAAGG-TTTAATGTGGAAAAAATGGTTCCACTCTGTCTCACCCCATACCCCAAAATAAACTTA-----------GATTAGGGACAAAAAGCATAATTATAAAAGTTTTGGAAGAAAAACACTAAATGAAGTCTTTGCCCTC--TCAGGAGAGCAGGCAAGAGGCAAATTCCAAAGCC-TATAGGAAACAACTGACTAATTTGGCTTTATAAAAATTTTTTTAAAAAAAGTACTTTTGTGTGGGGAAAAAATAGCACCATTAGAAAGGTAAATTGGC-------------------AACATCAGCAATGTAAACACAAAGTCTTGATACTCATTGTACACAGAGAGCTACCACAGATCAAC-AGAAAGAAGCA---GACTCCCGACAGAAACAGTGAAGGATAAACATGCAGGACATTAG-----------AATGGATAGGAAAAAATATAAGACTTCCCTATTCAACATAACAA----AACTTGAAAAACATTTAAGGACAAAA s canFam1.chrUn 84682447 1791 - 91062872 TCCTTGGGGTGAGGGTCTCCTCCGGACCCCAGCTCCCC-CTCCCCTTGCAGACGAGGAGAGGCTGCGGGAAGGGCTCCCACTCGTG---GTCCGGGTCTGTGGCCCCCGCGTCAGCTCCGTCCTCCTGCAGCCC-CTGGGCAGCCCCCCGCCTGGTGTGCTCCGGGCAG--CGGTGGCCTGCGAGGACCCTCCCTCGGTC--------CCCACGACCCACACAGCCTCAGCTCTCACTCGCAGTCGGGACCC------CACGTCTCACTATCCTTAGCCCCTCCCC-TAACTCACTTTGGCACAAATTAACAACCACTTTTTCTTTTCTTTCCTTTTTTTTTTAACCACTTTCTTGGCTCAGGCCCCCTTCTGGTCCTCCAGCAGCAAGCGGCGGGCGGCTGGGCAGCGCTGGGCAGGGACGCGGCGGGCAGCC-GGGGCAGCAGGG-GAAGAGGAACAAGAGGAAGGTGGCTGGTCCTCTCCCGGGAGCCGGTGCCCAGCAGG-AAAACAGGAGG---ATGCAGGACGTGGGGGTCGGGGTTG-------GGGTCACAGAGGTCAGC-------CCCGGAGCAGCCGAAAGGGGCCTGGGCCCAGCCAGGGGTCAGGAAGGTGTCCCGCAG---------------GAGCCGGACCCCAAGGGAGGCCAGGGTCA------------GGTTGTGCTCCAGCCCCCGGAGCTCAGCTCCCGGGGGCCGCGGTGACCG-----------------ATGCCAGCCGGTGGG-------TGGGGC--------CCCCCTCTC-GTGCACACCTGTGCCACCTGCGCACAGGGCCGCTACCTGCTTTCACAGGTGAGGAGCCTGTGCCTCTGGGGCTGCAGCCCCGTTTCTGCCCCCGGCTCCGTGCAGAAGCAGGACCTACATCCACTTCCAGATCCCAGGAGCCGTCCCGGCTTGCAGAGGCCAGGCTGGGCACGACCCCAATGTGACCGTTCTCTCCCCAGAAGCCTCCGGCAGTGCGGACGGCTCTCCCGAAGTCATTGGGGCGCTCAGGTGTTGATGTCACTCACCTGGAGGTGGCCCACCTCCTTCCCTCCT--------CGGCCCTGCC-----------------------CCACCTGTCC--------CCACTCTTCTGGAAGAAGCAGGAAGAGGTGAGGCCCAGGGTCTGG---GAACGGCTTGGAGGCTGGGAGG--CCCCAGGGCCCGATTTG--GGCTCAGTCAGACC-----ACCGGACT----CACTC---------------------------------------------------CCGAG---------------------TG-------------GCTTACACAAAGGTGCTTGTTCGATCTGCACAAGAATCCTTTGGGGgaag-aagaaactgaggctggagcaggctcagcacatggccgacatgcccgccatggggggccgggcatggattccagcccaggaagcccggctccagggcctgtgctccaagcccgaacgctataATTTGTGTCCTCCAGGGCTCCTGATATCTCAGATTTTAatgtgg-agaagtggttccactctgtctcaccccata-cccaaaatcaactcacata-------gattaaaggcaaaaagtataattataaaagaactggaagggga----tacaagggaaaagtgcacgctgtcaggaaaagggacccgatgcagaatctaag--cgtcacagaaacaacggacagatgggactacggaaag------ccgagg-----acttctgtgggacggatcg--agcagccggaggagcg-aaaatgtccagcgaggaaccaggcacaagcccctgcaa-gtaagcgc-gagtgctggcgtttatcacatgtaaagagcacctgcaagtcagtaaggagaaacca-acagctcaacagaaaagtggcaaaggaGAACGA--GAAAGACGTAA---AACATCTCCATGGACGCAGAGAATTATTCAATCTCC--ACTAATCACAGAAAGGAGAAGTTGGAAGATGTTTCGCAAGA--- a score=54131.0 s hg17.chr17_random 398305 627 + 2618010 TCTAGTGTTGCTCCAGTGAGGAAGGGATCCACTGACATGCCGTATGCAGGGGTGTGAATGGGAACAGGCTTTTGAGAGGTGATTTGGAGTCTCTATCACAAGTTTAAATGCACCTGCCCTGAGACGCCCATCCCTGGGAAGAGATGTCCGTGCAGATGTCTAAGGCACACGTCTGGAAACGGTGAAGACCTGAGAAGAACAATCCTTAAGGGTCCCAGCCCCTGAGTGTTCACCTTCCAGGGAAACCAGTCCTCATGGAGAACTCAGAG--CCCTGGTGGGGTGGTTGCTGTGGTCTAGGGCCTTTGTCAAGGTTCATCCCAGGCTGGGCTTTTGGAGGGCAGGGAGGCCGCTAGTATCTGGGTGGCTGCCT-GAGCCTGCAGATCCCACACCCAGCTGCCCCGAGGAGCTACTGTCCACCTG-GTGGAGACTCAG-------GCTGGGCCCAACTCAGAACTAGGAGCAAGGGAGTGAAGCAGGGATGGGGTCCTGCAGAGGGGC----------GGTAGGGTCTGG------------CCCTCCTGGTCTG----GGGG--------CCTCCCCGGGCGGGACAGTCCCNTGTGTCCCACCCCA--------------ACCGCCTGCTGCTTT----------------------------------TTCTGGACCACCC-----CCCANCCCGTCCCCCGTTCCCCTCCAGGCTGGGCTTCC s panTro1.chrUn_random 236848265 618 - 240967748 TCTAGTGTTGCTCCAGTGAGGAAGGGATCCACCGACATGCTGTATGCAGGGGTGTGAATGGGAACAGGCTTTTGAGAGGTGATTTGGAGTCTCTATCACAAGTTTAAATGCACCTGCCCTGAGACCCCCATCCCTGGGAAGAGATGTCCGTGCGGATGTCTAAGGCACACGTCTGGAAACAGTGAAGACCTGAGAAGAACAATCCTTCAGGGACCCAGCCCCTGAGTGTTCACCTTCCAGGGAAACCAGTCCTCATGGAGAACTCAGAG--CCCTGGTGGGGTGGTTGCTGGGGTCTAGGGCCTTTGTCAAGGTTCACCCCAGGCTGGGC--TTGGAGGGCAGGGAGGCCGCTAGTATCTGGGTGGCTGCCT-GAGCCTGCAGATCTCACACCCAGCTGCCCCGAGGAGCTACTGTCCACCTG-GTGGAGACTCAG-------GCTGGGCCCAACTCAAAACTAGGAGTAAGGGAGTGAAGCAGGGATGGGGTCCTGCGGAGGGGC----------GGTAGGGTCTGG------------CCCTCCTGGTCTG----GGGG-------ACCTACCCGGGCAGCACACTCCC-TGTGTCCCACCCCA--------------ACCTCCTGCTGCTTT----------------------------------TTCTGGA-CACC-----------CCCGTCCCCCGTTCCCCTCCAGGCTGGGCTTCC s canFam1.chrUn 84684238 581 - 91062872 TCCAGGATCCATTCGGTGAGGAAGAGC-------ACAAACCATGTGCAGGG-------CACGAAC-----------CAGTGATTTGGAGCCTCTGCCACA--TTTAA--GCGTCTGCACTGAAACTC------------------GCCC------------------------------CGGCGAAGCCCTG---AGCACAGCCCCTTGGGGGC----ACCCTGAGCTTCCGGCCTCTGGGAAC-----TCCGCGCCGACAGCCTGGAGGTCCCCGTTGTGGTGGGGGGGGGGGTCCCGGG-------AGGGAGGCATCCCTGCCTGGGC---------------------TCCATATCC---TGCCACCCTGGGGCCTGCGGAG-----GCCTGGCCGGGCCGTGGCTTAGCTGCACCCCTGCCTGGAGACGCAGCCGGGCAGCAGGACCTGACCT----CCCTGCTCTGGGGAG-----------TGGTGTCCCTCTGGGGCACCCCATCTCAGGGCAAGCCCTGGGGTACCCCCACCCCTTCCTGTTTTGTTCCAGGGTCCCCCACCCCACCCGGCCCCTCCAGGCCC--GGCTCCCATTCCAGTTCTTCATGATGGGCCCCATGCTGCCTCCGTGTCAGGCCGCGGTGTGTCACCGTCCCTGATATCCTGGACCTTCCCGGGGCGCTGCCCTTTCCTCACTGCC--CCAGCCCGGGCTCCC a score=855.0 s hg17.chr17_random 398932 9 + 2618010 CACTGTCTT s panTro1.chrUn_random 236848883 9 - 240967748 CACTGTCTT a score=818.0 s hg17.chr17_random 398967 39 + 2618010 CGTGGGGGCA------------GCAGCATCACTGCCTTCTC-------ACGTGGAATC s canFam1.chrUn 84684981 57 - 91062872 CACGGGGGCAGAGCCTGTGTGGGCAGCGTCAC-GACTTCTCTGGGCTGACTCGAAATC a score=170.0 s hg17.chr17_random 399006 34 + 2618010 CCAGGGAGCTGCAGCCTC--------------------------------CANCC-CTGCCTTCTG-----G s mm5.chr11 177208 38 - 121648857 CCAGGTAGCTG--GCTTC--------------------------------TGGCTTCTGGCTTCTGCTAGGG s canFam1.chrUn 84685038 66 - 91062872 TCAGGGAGCCGTGGCCCCGGCTGCATGCATCACCCTGGGATGAATCGCCATGTCT-CTGCCTTCCG-----G a score=33741.0 s hg17.chr17_random 399040 191 + 2618010 AGAGTTCNGTCTCTAATTTTATACGCCCTATCAGCCTGTTATTCGATCCAGATGCCTGTG-AAAT-----TTGCAGCGGGATCGTTCTGTGACGGGCGGTGGGCAGCCCAGGCAGGGCTGCCGTTTCGTGCATCA-GCCCAGAGGTCTGAGAAGGGTGTGGCTCCTTC-CCTGGGAAACAACATGGGACTAGTTCCAG----------------A s panTro1.chrUn_random 236849078 207 - 240967748 AGAGTTCTGTCTCTAATTTTATATGCCCTATCAGCCTGTTATTTGATCCAGATGCCTGTG-AAAT-----TTGAAGCGGGATCGTTCTGTGACGGGCAGTGGGCAGCCCAGGCAGGGCTCCCGTTTCGTGCATCA-GCCCAGAGGTCTGAGGAGGGTGTGGCTCCTTC-CCTGGGAAACAACATGGGACTAGTTCCAGGTGTTTTTCCACCCAGA s mm5.chr11 177246 179 - 121648857 TGGGCACCTGCCCTAATTTCGTTTGTGACATGAACCAATAATTTGATACAGATGTCTGTGAAAAA-----TCACAGCTGGATA--CATGGGGTGGATGGTGGTTGG-CCACAAAGGGCTCCTATCTTAAGAACCA-GGAATAAAGACTGA--AGGGTCTG------TC-CCTGGGGATCAACCTGGACC--ATTCCAGG---------------- s canFam1.chrUn 84685104 190 - 91062872 AAAGTTCCGTCTCTGATTT-ACACACGCGATCAGGCAGTTATTTGATCCAGATGCCTTTG-AAATGCGCGTTGCACTGGGACCATCCTG-GACGGG-GGTGG-CGGCCCGGGCAGGGTTCCCGCCTCCTGAATCACGGAGCCGGGTCT----AGGGAGGGGCTCCCTCGCCTGGGAAACAGTGTGGGCCTCGTTCCAGG---------------- a score=3864.0 s hg17.chr17_random 399231 58 + 2618010 GCCAACACCCATCACTTTGCAACCCCCTGGGTAAGTGTGCGTGGGNGGGGGGGGGGTG s panTro1.chrUn_random 236849285 52 - 240967748 GCCAACACCCATCACTTTGCAACCCCCTGGGTAAGTGTGCGTGGG------GGGAGTG s canFam1.chrUn 84685300 42 - 91062872 TCCAGCGCCCCTGG----------CCCCAGGGACG---GCGTGGGGGTCGGGGGG--- a score=20906.0 s hg17.chr17_random 399289 237 + 2618010 CTGAGCTGCAGC------------GGGGGGCAGAGGGCTCAGGCTGGACCACCCCTGCACCTTCCACAGTGAGGCCATCCCCTC---CTGAGCCTCTGGCTCCTGGCCT-------ATCCTCGCTCCCTCACCC----AAGCCCCATGAGGATTCAGTAGCTTGAGAA-------------------------------GGACCCTCTGCTCACCAGAGG-TCACAGTGAC----------TGTGAGAACACCCTCCTGTCCTCTTCCCCCCA-TTCCTTCCTGGACCTTGGGACACTTCTGGGAG s panTro1.chrUn_random 236849337 237 - 240967748 CTGAGCTGCAGC------------GGGGGGCAGAGGGCTCAGGCTGGACCACCCCTGCACCTTCCACAGTGAGGCCGTCCCCTC---CTGAGCTTCTGGCTCCTGGCCT-------ATCCTCGCTCCCTCACCC----AAGCCCCATGAGGATTCAGTAGCTTGAGAA-------------------------------GGACCCTCTGCTCACCAGAGG-TCGCAGTGAC----------TGTGAGAACACCCTCCTGTCCTCTTCCCCCCA-TTCCTTCCTGGACCTTGGGACACTTCTGGGAG s mm5.chr11 177464 229 - 121648857 CTGTGCTGTGGCATCTCAATAGAAGGAGAAAGGAGTGGTTTGG--GGACAAGTCTCGC-----TCACATTAAAGCTATCTCCC-------AGCTTGGGGCTACTGTTCT--------TCCTCACTATACCA--C----AAGTTACTGCAAATTTCCACTGC-CAAGGA-------------------------------GGAACCTGGGCTCATCTGATT-GCACCATGAC----------ATTG-GGTCATCCTCCT---CTCCCTCCCCAG-TTCCCACCT-GAGCTTAGAGCACTTCAGGAAG s canFam1.chrUn 84685342 277 - 91062872 --------------CT--------GGGCGTGGGAATGGTCTGGCC---CCAGGTTCCCAACCTACATGGAGGGCCTGTCCCTCCTCACTCACCCAAGGGCCAGAGGCCCAGTCAGAACCCTCTGCCCGCCAGCCTCGGAGGCCACGTG----CTCAGCGGTGGGTGGACACGGGGCAGCCCTGGACTGTTGGCACATCGGGGCCCCGTGCCCCCCAGAAGCTCACCGTCCCTGCAGTGTGATGTGCTGCTGCCCTGCGCTCCTGTTCCCTCTGCTTCCAGCCTGGACCTCACAACACTTCCAGGAG a score=19449.0 s hg17.chr17_random 399526 266 + 2618010 GCAGCGCCCTCTCCCAACAG-----------------------------AGTCTTCTCCACAGGGCAGCCACGGGGACTTTGAGGATACCAGGTCCTCA-------------------------CCCAGGCCCCCGTCTCAGAGTCAAAG-----------------CCGTAACT-----------------------------------------------CCCATAGCACAGTGGCCTTCGAG-------ATGCCCTCTTG---TCACCC-------------------GCCAAGGGGTGC-CGGCACT-------------------------GAGTGCGAGGATTTGACTT---------------------------CCCA----------------------CAAGAGGAAAGCAGGTTCTTTCCCAGGGGCCATGCCAGGCCCCAGCACCTCTGCTGACCTGGCTCAGTGCGTCGGGGAAA s panTro1.chrUn_random 236849574 261 - 240967748 CCAGCGCCCTCTCCCAACAG-----------------------------AGTCTTCTCCACAGGGCAGCCACGGGGACTTTGAGGATACCAGGTCCTCA-------------------------CCCAGGCCCCCGTCTCAGAGTCAAAG-----------------CCGTAACT-----------------------------------------------CCCATAGCACAGTGGCCTTCGAG-------ATGCCCTCTTG---TCACCC-------------------GCCAAGGGGTGC-CGGCACT-------------------------GAGTGCGAGGATTTGACTT---------------------------CCCA----------------------CAAGAGGAAAGCAGGTTCTTTCCCAGGGGCCATGCCAGGCCCCAGCACCTCTGCTC-----GCTCAGTGCGTCGGGGAAA s canFam1.chrUn 84685621 476 - 91062872 GCCCTTCCCTCTGCCATTAGTTGTCCTCTCTCTCCTGGTGGCCCCGTGAGGTATTCTCCACGAGGAAGCC-CAGGGACACCGTGGACACCTGGGCCAGATGCCATCTCCTGTGCTGCCTGCCTCCCCAGGCCTCAG-CTCAGGGTCAAAGCCACACCCCGGATGGCCCCGCAACTCTGAGGACCCTCAACACCCCCCATGGGCCCACCCTACCCCAACACCCCCCATGACCCAGGGGTCCACGGGACCCTCAACACCCCCATGGGCCCACCCTACCCCAACATCCCCCATGACCCAGGGGTCCACAGCACCCCACACATCCCTGAGAGGAAGCAGGGAATCCAGAGAGGTGACCCACGGTTGGGGACAGAGAGGGGCACTCACCCATCCACTCGCCCTCCCTCCCTGCCCAGCAGAAGGCA---CCGTCCCCCTTGGTGACGCCAGGTGCCCACCCCTCTGCAGAGCAGTCTCAGCAAGTG------- a score=92772.0 s hg17.chr17_random 399792 449 + 2618010 AGGGGTGCCCAGCCTCCTCTGTGTCTCCAAGTCAG----GGGCATCCCAAGGCAC---CTCACTTGGGTGCTCTCAGAAAAGACAGCCCTGAATCTCAGAGCCACCAAAGGCAGGCAGGATTCGAGCCTGGCCTCAAGCATGACTCTGGAACGTAAAGAGGAAAAGACGATTTAGGTTAACGTGGGACACAGCCGGTTTCCCG-CCCAAACCAAGGTCCAGGGGGACTTCTCATCCCCAGCAGGGGGTGTGTCTACAAAGAACAACCACAAACTGGGGTCATTTCCAAAAGAAACACTCCCGGCTTCCTCCAGGGGCAGAGACCGAGGGGTCTGGGGGAGGAGGCTGGGGTGGGCAGAGGCCCGAGGTAGGGAGGTCCAGGGGCACATCCCAGG----TCTGGCAGCATGGGCCGG----GCCCTGCTGGGAGGGGGCTGAGGACCCCAGA-GCCTAGGCCTGTCC s panTro1.chrUn_random 236849835 449 - 240967748 AGGGGTGTCCAGCCTCCTCTGTGTCTCCAAGTCAG----GGGCATCCCAAGGCAC---CTCGCTTGGGTGCTCTCAGAAAAGCCAGCCCTGAATCTCAGAGCCACCAAAGGCAGGCAGGATTCGAGCCTGGCCTCAAGCATGACTCTGGAATGTAAAGAGGAAAAGACGATTTAGGTTAACGTGGGACACAGCCCGTTTCTCG-CCCAAACCAAGGTCCAGGGGGACTTCTCATCCCCAGCAGGGGGTGTGTCTACAAAGAACAACCACAAACTGGGGTCATTTCCAAAAGAAACACTCCCAGCTTCCTCCAGGGGCAGAGACCGAGGGGTCTGGGGGAGGAGGCTGGGGTGGGCAGAGGCCCGAGGTAGGGAGGTCCAGGGGCACATCCCAGG----TCTGGCAGCATGGGCCGG----GCCCTGCTGGGAGGGGGCTGAGGACCCCAGA-GCCTAGGCCTGTCC s mm5.chr11 177959 438 - 121648857 AAGGGTGTCCAG----CTCTA-----CCACCTCAGAACTGAACAGCATAAGGCATTCACTCACTGGAGTGTCCTAAGAGAAGCCAGCCCTGAATCCCAGAGTGTCCAAAGGCAGATAGGATCCAAACTTGGCCTCAAATTTAAAGCCTGAAAGTTAAAGAACAAATACTACTTGGTGAAATGT-CGACAGAGCACGTGTCTTACCCCAAACCAAGGCCTAGGGAGACCTCTCTTCCCCAGCTGAGAGCGTGTCTACCAAAAACAACAACAAACTGGGGTCATTTCCAAAAGACATGGCCCTAGTTTCCTACAGGGGCCAAGGCTGAGGGGATTGACTAAGAGAGCTGGG------AAGGTCCCTAG---AGGAGGTT--GGAGCACAAACTAAGCCACCCTGACTGAAATGGGAGG-------TTGCTAGGAGAGAGACATGGGTGTCAGGCCCCTGAGTCTGTTT s canFam1.chrUn 84686097 384 - 91062872 AGGGGTACCGGACCTCCTGCCCGCC-CCACCTTG-----GAGCACCCCAGGCCAC---CTCGCCC-AGTATTCTCAGAGGAGACA------AGTCTCAGAGCCACCAAGGG-AGGCAGGATACATGCCTGG-----------------AACTTTAGAGTAAAAAATACCATTTAGGTGAACGT-GGCCACAGCCCATTTCCTGCCCCAAACCAAGGTTGAAGGCAGCCCTCCATGCCCAGCTAGGGGTGAGCCTGCAAAAAATGACAGCAAACCGGGGTCGTGTCCCAAAGACA-----CCGGCCT------GGGGGAAGGGCTAGGAGTTCTGGGGGAG--------------------CCCCAAGGGGTGAGTGCCAGCGGTGC--CCCAGG----TGGGGGCGGGTGGTGGGGGGTTGTCCTGCTGGGA-----CTGAGG----CAGG-GTCTACACCGATCC a score=7107.0 s hg17.chr17_random 400241 81 + 2618010 TAAGCCTGTCCTTAGCCGGAGAGCCTCGGCCCTGTGCT-GGCAGCAGGGTCTTCACTCCTTGCCAGCTCCACATAGGCAGTC s panTro1.chrUn_random 236850284 81 - 240967748 TAAGCCTGTCCTTAGCCCGAGAGCCTCGGCCCTGTGCT-GGCAGCAGGGTCTTCACTCCTTGCCAGCTCCACATAGGCAGTC s mm5.chr11 178397 66 - 121648857 CTAGGCATCTATCAGTACAAGAGCATCCATCCTGAGCCAGGCAAAGAAGTCATC--------CTGGATCCTCA--------C a score=75355.0 s hg17.chr17_random 400322 843 + 2618010 AGGCTCAGGCCAGCCCCCAGCCAACAGCGGCTCCCAACACGCCCTGCCCTGTGGGAGATGCC-AAGCTGGCATCCCTCTCGGGCCA---GGCCAGGCCTCCTGGTGGTGTGGCCAGCGCTGGCACACAGTCCTGAATTCCTTCAAAGAACAACAAACTGAAAATCCAGCTGAGTTCAAATTTGCCCAAATTCCCA-CTTGA----------AGTTTCCCTGTCCCAGAGGGTGGTA---CCCGCCCCACCCCGGTGGGATGTGGTGAAGGCAGTGGCTCCTCCCGGCCA---TGAGGCATAAACAAATACCGCCTGGGCCACAGGGG--CTTGGCCGGAGCCCTTGACTCAGCCCCACCCAGGCCCCCTCCTGCACCTC-------GACC--------------GGCTCCTGGGGCTCCATGACCCACAAGCCAGCA-AGTTTCTCAGCTGCCCTGACACAGCCTAAGACGGGTCT-CAAG--TCCCTGTCGTGCC-CGTCCCAGGAAACCGGT--CTTCACCTAGTCAGTCCCAGAGACCTTGCTCCTCACGCCCAAGGTGAGCAGCCCCGTGTGATTCTCAATCTTTCAGGGTTGACCCTGACCTAACCCACATCTCCACC-----------------------------------TCAAGTCTCCCACT------------------CCAGTCTGAGAAACCCTCCCCGCT----CCAGCCCCTAagcccagcccagcccagc-----------ccCGCAGGGCCTCCTGACTCACCCAGATCTGTCCCC---------ACAAGAGGCCTC---CTCACTCC----------TCAGTGGG---------AGACTCCGTGGCGTGCAGGCTCCAG----GGGCTCTGT------------GGTCC-CGGAAGC---------------------GAAGGTGGGGCTGGAGGAGGAAGCGAAG-----CGGATGTCACCT------------------------TCCTTGAGGG----------------------------ATTCTGGAGCCGCTTCAGTGGACATC--------TTTGCCCT------------CTGACCTGA-GC s panTro1.chrUn_random 236850365 837 - 240967748 AGGCTCAGGCCAGCCCCCAGCCAACCGCGGCTCCCAACACGCCCTGCCCTGTGGGAGATGCC-AAGCTGGCATCCCTCTCGGGCCA---GGCCAGGCCTCCTGGTGGTGTGGCCAGCGCTGGCACACAGTCCTGAATTCCTTCAAAGAACAACAAACTGAAAATCCAGCTGAGTTCAAATTTGCCCAAATTCCCA-CTTGA----------AGGTTCCCTGTCCCAGAGGGTGGTA---CCCGCCCCACCCCGGTGGGATGTGGTGAAGGCAGTGGCTCCTCCAGGCCA---CGAGGCATAAACAAATACCACCTGGGCCACAGGGG--CTTGGCAGGAGCCCTTGACTCAGCCCCACCCAGGCCCCCTCCTGCACCTC-------AACC---------------GCTCCTGGGGCTCCATGACCCACAAGCCAGCA-AGTTTCTCAGCTGCCCTGACACAGCCTAGGACGGGGCT-CGAG--TCCCTGTCGTGCC-CGTCCCAGGAAACTGGT--CTTCACCTATTCAGTCCCAGAGACCTTGCTCCTCACGCCCAAGATGAGCAGCCCCATGTGATTCTCAATCTTTCAGGGTTGACCCTGACCTAACCCACATCTCCACC-----------------------------------TCAAGTCTCCCACT------------------CCAGTCTGAGAAACCCTCCCCGCT----CCAGCCCCTAagcccagcccagcccagc-----------ccTGCAGGGCCTCCTGACTCACCCAGATCTGTCCCC---------ACAAGAGGCCTC---CTCACTCC----------TCAGTGGG---------AGACTCCGTGATGTGCAGGCTCCAG----GGGCTCTGT------------GGTCC-CGGAAGC---------------------GAAGGTGGGGCTGGAGGAG-----GAAG-----CGGATGTCACCT------------------------TCCTTGTGGG----------------------------ATTCTGGAGCCGCTTCAGTGGACATC--------TTTGCCCT------------CTGACCTGA-GC s mm5.chr11 178463 752 - 121648857 AGACCCAGGTCA-------------------------------CTGCTCTTCATGAGGAGGT--TGCTAGCATCCTTACC---CTG---AACCAAGCCTCTGTGTGGTATGGCCAGCTCACACCCACAGTGCTGAATTCCAACCAATATCTAT------AAAACCCAACTGCTTCCAAATCTCTTCACATCTCCT-CATAGAGAACATCTCAGATTCCCTGTCCCAGATTATACTACTTCCTGCCCCA------TGGGACAAGGTGAAGCCA-CAGTTCCTCTTAGCCA---CGACACA--------------CTGAACAAGAAAAA--CTCAGCAGG-GCTAATAGCT--GACCTACTCTGGCTCCTACCTCTCCCTCCTTAAATGGCCTGAATATGCTTCCTGGCTCCTGGGGCTTGCTGAACCACACTTAAAAATAGTTGTTCAAATACCCAG--GCAGCTTACATCGAAACTGTGTG--TCTCCATATAGCCATAGCCCTGGTGGCAGGT--CCTCTTCTAA-----CTCAAAGACTTTGACCCTTA---CCAGGA--AATAAC-------------------TTCTGGAAAGACTCT--------CTATATCTGGACC-----------------------------------TT--GGCTCAGTCC------------------CCAGCCATAGAACT-------------------------------CCCAGGCCAG-------------TGGTTAGGGCTCCTGACACACCCAAGCCTCTCC------------CAAAGGATCTG---ATATATTA----------GCAG----------------CTCAGAGGCATGTAGGC-CCAC----TAGTTCTGT------------ATTCCTCGGGGGTCATTAACAGTAGTGGTCAGTAGATAGTGACATTACAAAAAAGGACCAAG-----AGTGTATGG---------------------------TCCTTATGAG----------------------------ACATTAGTGCCACACCAATGAGC-CC--------TTCACCCT------------TAAACATGG-GC s canFam1.chrUn 84686513 962 - 91062872 GGGCTCAGACTA----------------------------GCCCTGCCCTGTGGGAGGGGCCCACGCTGGCAGCCCGCACCCCCCACACACCCAGGCC------------GGGCGACACTGGCCCGCGGTCCTGAATTCCATCAAAAAACAACAAACTAACATTCCAGCTGAACCCAAACGCGCCCAAATTCCCACCCTGG----------AG--------------------------CCCT-----------TGGCAGG------------TCCCTTCTCCCTGCCACCTCCAAGCAGAAACAGAC----CCTTGGCTGGTggggcccccggcccgggccccAGCCCACATCCCACCT---CCACCTCCTGCCCTTT--GCAGGGGCC--------TCGCCTTCCTCCCGGGGCTCG-TGACCCACAGCCAGGCT-AGTTTTTCAGCAGCCCCAACACAACCCACAGTAGGGCT-GGGGTCTCCCCACCCCGCC-CCACCCAGGAAGTCTGCTACCTGGCCCAGCTCCCCTTGCAGACCTTGCTTCTCACGCCCAAGGTGAGCGACCCCCTGCCACTCTGGGG--GCCTGGGTGGGTCCT--CTGATCTCACACCCCCGCCGGAGACACCTGGCCCCTCCTCTGGCCTCGCCTGGGTCAGGTCCCTTCCTGGCTCACCCAAGAGGTGCCCAGGCGGAGAGCACCTGCTGACTGGGAAGAGCCTCTCAGCCCCTCCGGGAGCGGTGCACCCTTGGACCTACGGGACCTCCCT-CGCCCTCACGTCCACCGCCTGGGTTGGGAGCGGCGACCCCAGGCTCAGCCCATGTTTGAAAGCAGCTGGGGCCCTCCCAGGCCTTGGGGCGCCCAGGCCCCGCTTGTGAACCCTGCCGGGCTGACCCAGGCCC-CAGGGGC---------------------GGGCGTGGTGCCCGAGAAGGCACCCAGGTCACCAGGGCAGCGCCCACGCAGTGTGCTCATTCCAGAACGCCCTTGGGGGTGAGGCACAGCCTGGCTCCCCAACTTCTACCCTGCAGCGGCAGCCCTGCCCACCCCACCCCGTGTGCCCTGCCCTGCCACCCCTGGCCTGACGC a score=6155.0 s hg17.chr17_random 401165 79 + 2618010 -CTCTGATTGGGTCATGGG------------TGG-------------------CCAGCAGC-------ACAGCTGAGCCTGTGTCCTGTGCA---------GCCCCAGCCCCTC------------------------CAGCGGGATCACT s panTro1.chrUn_random 236851202 79 - 240967748 -CTCTGATTGGGTCATGGG------------TGG-------------------CCAGCAGC-------ACAGCTGAGCCTGTGTCCCGTGCA---------GCCCCAGCCCCTC------------------------CAGCGGGATCACT s canFam1.chrUn 84687475 151 - 91062872 CCCCCAAGGGCAGCCTGGGCCTCCTCGTCCTTGGTCCCTGCTCCGTCCTGACCTCAGAAGCCCTGGCTCCAGCCGAGACCGTGATCCAGGCAGAAGCTGGTGCCCCAGCCTTTCAGGGGGGGCCTGGGGTCCTCATCTCCGCGGGAGCACG a score=29813.0 s hg17.chr17_random 401244 336 + 2618010 GGCCCGTTGGGGATGACAGAGAGACACtccccgtcctctggagcaggggtccccaggctgtggtctgttaggaaccggccgcgcggcaggaggtgagcggtggaccggcctgaccctgagctccgcctcctctcggatcagcggcggcattcacttctcacaggagcgtgac---------------ccctattgtgaact--gcacgcaagggatctaggttgtccgctccttatgagaatctaatgcctgatgatctgagagggaaaccatcccttcttctctccaacacccacagaataagtgtcttccacaaaacctgtccctggtgtcaaaagggttggggaccactg s panTro1.chrUn_random 236851281 353 - 240967748 GGCCCGTTGGGGATGACAGAGAGACACtccccatcctctggagcaggggtccccaggctgtggcctgttaggaaccggccgcgcggcgggaggtgagcagtggaccagcctgaccctgagctccgcctcctctcggatcagcggcggcattcacttctcacaggagcgtgactgcgctcctattgtgtcctattgtgaactgcgcacgcaagggatctaggttgtctgctccttatgagaatctaatgcctgatgatctgagagggcaaccatcccttcttctccccaacacccacagaataagtgtcttccacaaaacctgtccctggtgtcaaaagggttggggaccactg a score=8915.0 s hg17.chr17_random 401580 88 + 2618010 CTCTGGTGG----GAAGGTGCCAGGCCCCTCAGCCCCTTCCAGGAGACTGAGAAAGGGTTCAGGAAACC--------TGGGGGGCCGGCTGGTTCACCAC s panTro1.chrUn_random 236851634 88 - 240967748 CTCTGGTGG----GAAGGTGCCAGGCCCCTCAGCCCCTTCCAGGAGACTGAGAAAGGGTTCAGGAAACC--------TGGGGGGCCGGCTGGTTCACCAC s canFam1.chrUn 84687674 93 - 91062872 CTCTGGAAGCTCTGAGGACACCA--TCCTCGGGCCTCCTCCGGGGTGCTGC-----TGCCCGAGCAATCCATCCCGACAGGGGAGGGTCTCTGTCGCCAC a score=83709.0 s hg17.chr17_random 401668 541 + 2618010 ----CCTCCCCCCACCCTTGGCTCACCCAAG---------TCAGGG--GCTCCACCCCAG----------------CAGGCAGAGCTGACAACTCACAGGG---GTGTCTGGGGAGGGCAATGTCCACTGCCATCTGCCAGGTCACGGGGGG---ATGCTGGAGGTCTGC----TCTACCTCAGTTCCCCTGG-------CGTGGGTGCCTGGGGCTTCAGATTCAC-CCTTGTGTGGAGGTGGGGAGGCAGGATTGGGGAGGACCCTGAGTCT-CCCAGGCAGGCAGCCTGGCACCGGGTGGGGGACTGTGATCCAGCAAACCTGCTCATTCTTGTGGGCGG-CTAACGGCTTTT-ATTTCAGGACACCCACATGTGTTAAAACAGGAAATAAAGTATACGAGAAACAGCA-CCCCCACACACTCCCGGGTAAGGAGGCTTTTCCTCAGTCC------TCCACTCACACCCACACAGCCCCAGGAGGGACCC-CTAGGCACAGCCCACACCTCCACATCCCATCCAACCCCCACGTTCCTGGGCTGCTCTTTCTCTGAAGCATTTTAA--CACACAGGCGTGAGTGCACATACACACACACG---- s panTro1.chrUn_random 236851722 541 - 240967748 ----CCTCCCCCCACCCTTGGCTCACCCAAG---------TCAGGG--GCTCCACCCCAG----------------CAGGCAGAGCTGACAACTCACAGGG---GTGTCTGGGGAGGGCAATGTCCACTGCCATCTGCCAGGTCACGGGGGG---ATGCTGGAGGTCTGC----TCTACCTCAGTTCCCCTGG-------CATGGGTGCCTGGGGCTTCAGATTCAC-CCTTGTGTGGAGGTGGGGAGGCAGGATTGGGGAGGACCCTGAGTCT-CCCAGGCAGGCAGCCTGGCACCGGGTGGGGGACTGTGATCCAGCAAACCTGCTCATTCTTGTGGGCAG-CTAACGGCTTTT-ATTACAGGACACCCACATGTGTTAAAACAGGAAATAAAGTATATGAGAAACAGCA-CCCCCACACACTCCTGGGGAAGGCGGCTTTTCCTCAGTCC------CCCACTCACACCCACACAGCCCCAGAAGGGACCC-CTAGGCACAGCCCACACCTCCACATCCCGTCCAACCCCCGCGTTCCTGGGCTGCTCTTTCTCTGAAGCGTTTTAA--CGCACAGGCGTGAGTGCACATACACACACACA---- s mm5.chr11 179695 524 - 121648857 ----CTGACCTTTGCTCTTACTTTACTCTGA---------TCAAGG--G-TCTACCTAGC----------------CCTGAAGAACTGACACAACATAAGGTCAGCATCCTGTCAGAAGATTACCTGCTGTAACCT----------AAAGAG---ATGCTTTGGATGTTCCGTATCTTTCTCTGCTTCTTGGGACCAGAACCTGAGTGCCTGGGGCTCCAGACTCCCACCATGT-------TGAGAAGACAGTCCTGGGAAGGGTTTCATACCTCCCCAAACAGGCAG-------TGGGGTAAAGTTCTGACCTTAGCCAAACCTGCTTG-ACACATGAGAAGTCTTGCAGCTTTC-ACTTCAGGATACCCACATAAGTTAAAGTAGGAATCTGAGTATGTGAGAAACAGCA-TCCCCATATACGCATG-----GGAGGCTCTTCTTCTGGTCTTATGTCCTACCTGCTCCTGTACAGCAATAGAAGGGATCCACCAGGCACAGTGTA-----CTGCATTCC--TCTGCCCCCA--TTTCTGG---GATTTTTCTCTGAAGCTGTTTAAGGAGAACATATGTGCATATGTAAGCATGTACCCA---- s canFam1.chrUn 84687767 529 - 91062872 CCTTCACCCCCTGACCTGGGGAGCACCGAGGCCCGGCCTCCCAGGGCAGCTCCTCCAGAGGCCCGGGGAAGAGGTTCAGGGAACCCAGAGACAGCGCGAGG--------CTGGGTGAGCCGGGCCTG--GGCACTT-------CACGGGGGGGCCGTGAGGGGAAGGTCG----CCCCCCTCGGTCCCCAACC-------CATGAG-GCATAGGTCCTGGGGCTCA--GCTGAT-----------------GGCCGGGGGAGCACCCC--GTCT-CCAGGACATGCAG--------CGGGGGAGGGTTTGAG-CCCAGCAATCCTGCTCATTCTCATGGGGAC-----CAGTTTTTAATTTCAGGACATTCACATGTGTTACAACAGGAAATAAAGTGTGTGAGAACCAGCATCCCCCACACACTCCCG--GCAGGAGGCTCTTCCGGGGGCC-TCGGCTCCACCCGCCCCCACACGGCCCCGCGGGGAGACC-CCAGGCCCGGC--------CCGCGTCCTGCCCAAGGCCCGCATTCCTGGGCTGCTTGTCCCCTGAAGCGCTTAAA-Ccacacacatatgcacacacgcacactcacacacacg a score=3181.0 s hg17.chr17_random 402209 20 + 2618010 TTTACCAACCATGCTTGGTC s panTro1.chrUn_random 236852263 20 - 240967748 TTTACCAACCATGCTTGGTC s mm5.chr11 180219 20 - 121648857 TGCACTAACAATGTGTGACC a score=2587.0 s hg17.chr17_random 402229 12 + 2618010 CCTGTAGCGTCT s panTro1.chrUn_random 236852283 12 - 240967748 CCTGTAGCGTCT s mm5.chr11 180402 12 - 121648857 CCTCTAGCTTCT a score=2731.0 s hg17.chr17_random 402241 8 + 2618010 CCTTCCAC s panTro1.chrUn_random 236852295 8 - 240967748 CCTTCCAC s mm5.chr11 180414 8 - 121648857 TACTCCAT s danRer1.chrNA 127839626 8 - 390413307 CCCTCCAC a score=5738.0 s hg17.chr17_random 402249 52 + 2618010 CTGGG--------------GCAGGTGACATAAGGGGTCAGGTGCCCGCTGACTCAGGACTTGTGGT s panTro1.chrUn_random 236852303 52 - 240967748 CTGGG--------------GCAGGTGACATAAGGGGTCAGGTGCCCGCTGACTCAGGACTTGTGGT s danRer1.chrNA 127839634 61 - 390413307 CTAGGGGCCTGTGACCCCAGCAAGCTACCCACGGGTCCA-----CCTCTCTCCCTGGACTTGAAGT a score=1996.0 s hg17.chr17_random 402301 23 + 2618010 TCCTGGAACtctcaaactgtggc s panTro1.chrUn_random 236852355 23 - 240967748 TCCTGGAACTCTCAACCTGTGGC a score=12525.0 s hg17.chr17_random 402324 76 + 2618010 tgcatgagtcccaccctgagggctgatggggtggacccacagagtgctggacct-gccccaaacctcagagCATGTC s panTro1.chrUn_random 236852378 76 - 240967748 TGCATGAGTCCCACCCTGAGGGCTGTTGGGGTGGACCTACAGAGTGCTGGACCT-GCCCCAAACCTCAGAGCATGTT s mm5.chr11 180503 75 - 121648857 TGAGTTAGTCCCACTTTGCAGGCTCATGGAGTGAAC--ACAGAATACCAGCCTTCACCCCCAACAGCAGAGCATGTT a score=-247.0 s hg17.chr17_random 402400 37 + 2618010 --------GGGCTGAATGTCCAGAC-ACCGAGGAGCTTCGGGCAAG s panTro1.chrUn_random 236852454 38 - 240967748 --------GGGCTGAACGTCCAGTCTTCCGAGGACCTTCAAGCAAG s mm5.chr11 180578 34 - 121648857 --------AGGCTG--TATCTAGGT-GCCAAAATGTCAAGATCAG- s danRer1.chrNA 127839707 43 - 390413307 GTGCCCCCTGGCCCTACACCTAGGG-GCCTAAGACCCC--AGCAAG a score=-7176.0 s hg17.chr17_random 402437 230 + 2618010 ---GTCAGGGG------------CCAGGCATCGTGACAGTGTCCCCAGGCAGCT-------------GACCAG-GAGAGGACAAGGCAGCTGAGAGGGCCAG--GGGAGGGGGTGTGGGAATG-CAGGGCTAGTGTCAGCAGGCCCAGCTGGGTGTGTGTCTCCTGGGAATCTGCTACAGGGGCCCTAGCACTGCGCTGTGCTCCCCGGGGGACCCCCACCCACCCA---GG----------------CCAGGGCCAGGGTGGTGGCTCCGTGTAGTGGCC s mm5.chr11 180612 203 - 121648857 ---GTCAGGAT------------CTGAGCATCACAAAAGAATCCAAATACAACT------------CAATCAGTGGGTGGTTAA------TAATGGAGTCAGATGTATGAGGTTATACAGATG--AGGGGTA-----------------TGAGATTATATCACCTGGGGATCTGCCATCATGTCTCCAGCACTG-GCCCTACTCCTGAGAGG---------TAATCAGTGGA----------------CCAGATCTACCAGTAATACTCCACACAGAGGCC s danRer1.chrNA 127839750 262 - 390413307 CTACCCAGGGGTCCACAACTCTCCCTGGACTTGCAGCACAGGCCCCAGGGTGCCCCCTTGGCCCTCCACATAG-GGGCCTCTGACCCCAGCAAGCTACCCAG------GGGTCCACATTTCTGCCTGGACTTGCATTAGAGAGCCCAGG-------GTGCCCACTGGAGCTCCAC--CTAGGGGCCTAAGACCCCAACAAGCTACCCAGGGGACCACAACTCTCCCT---GGACTTGCAGTGCAGGCCCCAGGGTGCCCCCTGGCCCTCCACATAGGGGCC a score=952.0 s hg17.chr17_random 402667 41 + 2618010 AGTGCTGTTCAGGGT--CTgggg---gctggtacaggggaggagct s mm5.chr11 180815 46 - 121648857 AGTACTAAGCAAGCTAGCTAGGGAAAGCTGTTAAAGGAGAGGCACT a score=18350.0 s hg17.chr17_random 403146 286 + 2618010 ACAGGGGAGGAGCTGGTNCAGGGGAggngctnggntncnggggangggnntngnncaggggnggngntggtacnggggaggngctggtacaggggaggggctggcacaggggaggagctggtacaggggaggggctggtacaggggaggagct-ggtacaggggaggggcttggtacaggggaggggctg-gcacaggggAGGAGCTGGTACAGGGGAGGGGCTGGCACAGGGGAGGGTCAGTTCTGAGTGATTCTGACCAGGACTTGCGTGTGGAGGGTTTGACCCC s panTro1.chrUn_random 236852914 264 - 240967748 ACAGGGGAGGTCCTAGTACAGGGGAGGGGCT---------------------GTACAGGGGAGAGGCTGGC-CCGGGGAGGAGCTG-TACAGGGGAGGGGCTGGTACATGGGAGGAGCTGGTACAGGGGAGGGGCTGGCACAGGGGAGGGGCTTGGTACAGGGGAGGGGCT-GGTACAGGGGAGGGGCTTTGTACAGGGGAGAGGTTGGTACAGGGGAGGGGCTGGCACAGGGGAGGGTCAGTTCTGAGTGATTCTGACCAGGACTTGCGTGTGGAGGGTTTGACCCC a score=22401.0 s hg17.chr17_random 403432 253 + 2618010 CCC-AGGTTAGGACCCCAA----GTTTTACCCACGGGTCCCCCACCCCATATGCACATGGGCTGAGGTCGGAGGGCTGCCTGCCCAACGGCCTGCAATGGCTAGTGGGGTCTGTTCCA----CTCTTGAGCCAAGTGCTGAGGATCTGCCTAGTGGGAGAGCCTGGTGGGGAACATCCTGTCTCTGGTAAATCCACTCGGGGCNGGGTGTGACTGTATAATCGA--------------------------------------------------------------------------------------GGNTGGTCATGAATGTTTGGAGGTTTATGTCACTGTGC s panTro1.chrUn_random 236853178 340 - 240967748 CCCCAGGTTAGGACCCCAA----GTTTTACCCATGGTTCCCCCACCCCATATGCACATGGGCTGAGGTCGGAGGGCTGCCTGCCCAACGGCCTGCAATGGCTAGTGGGGTCTGTTCCA----CTCTTGAGCCAAGTGCTGAGGATCTGCCTAGCGGGGGAGCCTGGTGGGGAACATTCTGTCTCTGGTAAATCCACTCGGGGCTGGGTGTGACTGTATAATCGAGGTTGGTCACGAATGTTCGGAGGGTTATGTCACTGTGCTCCGTGGTTGGTCACAAATGTTCGGAGGGTTATGTCACTGTGCTCCGTGGTTGGTCACGAATGTTCGGAGGGTTATGTCACTGTGC s mm5.chr11 180885 228 - 121648857 CCT-AGGTATGGATACTAACTACATCTTATCCATAGCTGTTCAA--CTATTTATAGATGGGACCAAGGCAGAGTAGTTGTTGCCCAGTGCCCTACA---GCTAATGATTCCTTGTCTATCTGCACTCAAACCAAGTACC--------------------AGTCTGGC-----ACCTTCTTTCTC-AGTAAAGCCACT--AATTCTGGTATGACTGTAGAATTCA--------------------------------------------------------------------------------------CATCCATCATTAGTGTTCAGAGGAATATGCCATCATGC a score=8777.0 s hg17.chr17_random 403685 103 + 2618010 TCCGTGGTTGGTCACGAATGTTCGGAGGGTTATGTCACTGTGGCTCCGTGGAACTGGCACCAAGCTCATCTCGCGACCTCTTCTGTTGAAGAAANTGATGCCC s panTro1.chrUn_random 236853518 102 - 240967748 TCCGTGGTTGGTCACGAATGTTCGGAGAGTTATGTCACTGTGGCTCCGTGGAACTGGCACCAAGCTCATCTCGCCTCCTCTTCTGTTGAAGAAA-TGATGCCC a score=10837.0 s hg17.chr17_random 404261 1782 + 2618010 AGGGGTGTCCCCCATAGAATGCACCCTTGAGATCACATGGTCCTGGAGCCCCTTTCCAGGGGGTTCCAGAACAATGCT-ATGAAACATTTGTTCATTTGATTCGTATTTGTTGAATTCCTGCTACCTACCAGTCACTCTCAAGCATAACACGGAGCTGGTTCTGCAGACTACACCCGGGCATCTGGGAA-CTGGCACCCAGGAGAGCACCCGACACCGCTGAGCTGGGCCAGCAGGTCGTTCTCTCTGATTCCCCATCAGCCTTGCAAGACCTGTCTTAGGAAGAGGAGTCCAAGTGAGAAAGGGGCAGATCCTGGAGNNGNGAAGGGATTTGGGGGAGGGCCCCTGACGCCCTGTGGGCTGACCGTTCCCCGGTGCCACTCAGGAGTCTCCTGTGGAGCCCTCACATTTGCAGTGGGATGTGCTGTAGGTTTACGGGATCCCAGCGCCAGAC-----AGAGT------GAGAGGAACGGGACATTCATGCTGGTGTCCGTGGGTCCCGCCTGTTGCCTCT-CAG-ACCTCTCACCGAGCTTCTTGACCTGGGCTTCGCAGACCCTGGGCTCTTGGACCTG---TGTTCAAAGGAGCATGGACTCTGGCTGGGGTTGCTAAAGCTTCAGACAACTGTCCNAGCGCTGAGTGGAGC----GGAGGCAAGC---CCAGGGGTGctgcccagaggcagcttcctgagaaaa-tgaagttgctgttgtttaaagccaccgaggtttTGCAGCAACGGGGGAGTGAGCATTGGTCTCCACCACGCCCGGGGCCGGGTCAGGCCAGG----------ACGAAGGGTGATGTTTCCTGTGC--GGATCCCGTAGGTGGAGTTCACCGTCACTGGGAGGCCTCACAATCATTGCTTTATTCACCTCGACAGGTCCCATGAGGCGAGCCCCCGCTCCTCCCTTATTTAAGCATTTTAAATAACGA----GTTTACAAATTTCCAACTTCAAAATGTGTTAAAAAATCTTCACTC--CTCCCACCTCCTCTCCCGTCTGCTCAGTCCTGCCTCTTGGAAGAGGCAGCCATTGTCACTGGTGTCTTAGGTGACTTCCCAGAGGTCNCTTTAGCACATACAGTTCAATACAAATACATATTCCCTGACTTTTACACCAACGGCAGGATGTTACATACACTTTTCTCCTTGTTACTTAAAAATTTTTAAATTTTCTTTCAtttttataatagactttattttt-agggcagtgttaggtctacagaaaattgaggggatcgtagagagagt-tcccacatacccacgtccagtttcttgcactgttaacagtttatgttagaatgatactttgttacaatcaatgaaccagtgttgtcacatgattgttagctaaagtctgaagtttattcacgtctttagtttcccctaaatgtcctttctctgtcccaggacccatccagggtcccacatgacactttgtcccgcgtctccgtaggcctctcggggctgggcag--ttctcagactggcttttggtgactgggacagttttgaggaggcctgttgggtgtt--tggtagct--gcgtctctgttagaattgttctgatgtgtttctcgtggtaagactggggtttggggcctggggacaatgaccccagaggtgaagtgccctgctcaccccatcctgtgagggactcacacacccagcacggatgcttgctgtggacactggcctcggcc-----acccagctgaggggagtcggtcaggtctccccacggtgatgtgatccttttccttccctctccatactctcgggaaggaagtcagt-ctacacagcccacacttg s mm5.chr11 121414672 1568 + 121648857 ACAGGTCCCCTCCCTGGAACTCTGCCCT------CCCTGGCCCC--AACACCCTTTCCAGAGTTTCCAGAGC--TGCTCATGGAAAGCTTGTACACCGGACTTAGCTTTGCTCAGCCTTCATTGCACACCAGCTGCTC----AGATACCACAG----TGTTTTGAA------ACTCTGTTGTTTGAAAATCTGCCATCTGGG------------------GAGGGGGGTGCTATAGTCATTCCCTCTGG----------GCTTGGCAGTCCTGGTCTGGGGAAGAGGAACCAGAATGACAAAAAGACACATCTTGGGG--GTCAAGAGAATTTGGGGAGATTCC--AATG--CTAATGGATGATCCTTCAT--------ATCATGAGTGTAGTATGTGGTTGTCATGTTGGTTGTTGTATTTACTGGGCTGTCCTGAGGTTCTAGGGAGAGTCTGCCATGAGTTTTGCAGAGGAGAGCTTG--------------GTCTGTG---CACACCTGCCACCCTTACAGTGGCTCACACAGAGCCTCCTG-CTTGGGGCTCCTTGATACTGGATTCTCAAAGCTGGTTGGTCTTAAGAAG----------GGTTCTAGAGGCAGAAGGTTTAGACAACT--------GCTGGTGGAAGCCAAAAGGAGCAAGCAGATCAAGGGCCCTGCCCAGAGGCTGGTTCCCCAGAAAAGGGAAGTTGCCATTTGCTAG---CCTTGAGGTTTCCAGTAAATAGGGGAGAGGACATTTTCCCTCTC----CCTAAGGCTAAGCCAAGCCAGGGACAACTAGAGAAAATGGTGTGGCTTACCATACTTGGAGCCT-TAGGTGGGCCTTGCCTGTTCCAAGA---------------ACTTTA-----CCCTACAAGTCCCA--GGGCAAGT-----CTCTCTCCTTACTTTAAAATTTT-AATAGGGAAATCATTGGTAAGTTTCTAGTTTCTA---GTATCTAAGAAAGTACACTTCACTCCCACCTCCTCT-----------AGCACCAC-------------------------CTGGTGTCTTTCTT--CTGTCTAGAGTT---TAAAGCACTTAAAATTCAGTGAAGCTAT---CTCTCTACCCACTATGCAGATTACAGCAAGGTGCATATACCTTTCTGCATATTCCTTTAATCTTTAAAAACTTTCCTTCACTTTAATAATAGACTAGCTTTGTAAGGGTAGTTTTAGATTTACAAAGAGCT--TGGAAAGATAGAATGGGTATCTTACCACCCCAAAGGCAGCTCCT--CTCTGCTA------CATGTC--------------TCATAAACTTAGCACCATTAGTGACCCATTATTGAGAACACAA---------TATTTCACACATCCTGCTATTCCTTTCTG-CCTCTTTCTATCAAGGAGTTCACACAGGATCTCACTGGA-------TCTCTCAGTTTCTTTGGCTACTCTGCACTGGGATGCCTACTCATACTCTC------TGAATTGGAGATGGCCATGCAAGTGTATTGGGTATTCATAGGAGTTCAGTGTGACTGT--GATCTGTTA-GATGTTTTTATCATGGTTAGATT-GAGTTTGGGGC------ACA-------CAGAGACCAACTATCCTTCTCTTCATATC-----AAGAA--CATATAGCC-------ATGCAATCTGCTGCATTTGACCCCGGCCCTGTACCCTGGCTAAGATGAATTTTCCAGGTC-ACATGCTACAATGTCATTCTCTCCTTT--CTGTACAGACTCATCACAAAGAAGTCACTACTACATGCTTCA------ a score=4879.0 s hg17.chr17_random 406043 114 + 2618010 agggttgcgtatttatgtttaatttaatattantttattggagatcttttcatatgactacaaaaagaacttcgtgttctgttt-cacgcctcatagtattctattgtacgcatc s mm5.chr11 121416240 109 + 121648857 --AGTTGCTTGTTTCTTTTCAGGTTGATGT---CTTCTTGGAGATCTTTTCATATGG-TACAAAGGCAGCTGTGAGTTCTTTTTACATGTGTGCTAGTATTCTATTGCATGCTTT s canFam1.chrUn 6347203 91 + 91062872 --aGGATCGTGTATCTTTTTAGGTTAATGCTG-TTTCTCGGGCATCCGTTCTTGTTG------------------GTTCTTTTT-CAGACCGG--AGTGGTCCGTCGCTCGTCCC a score=7400.0 s hg17.chr17_random 406157 54 + 2618010 tgccgagacatttgaccggtcctctccttgatgtgcatttangatgtaa--gtatc s panTro1.chr19_random 55097447 54 - 57627672 TGCCGAGACATTTGACCGGTCCTCTCCTTGATGTGCATTTAGGATGTAA--GTATC s mm5.chr11 121416349 40 + 121648857 -TATAAAACAT-------------AATTAGATGGATATTTAGTATGTAA--CAATG s canFam1.chrUn 6347294 53 + 91062872 TGGTGGAAGG---GACCAGTTTTCTCCTCAATGTGCATTTAGGATGCAACGGGATC a score=749.0 s hg17.chr17_random 406211 6 + 2618010 attgaa s panTro1.chr19_random 55097501 6 - 57627672 ATTGAA s mm5.chr11 121416389 6 + 121648857 TTTGGG a score=27413.0 s hg17.chr17_random 406217 304 + 2618010 gacacatacttttttttttttt-gagatgcagtctcactctgtagcccaggctggagtgcggtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtanctgggactacaggctcacgccaccacgcccggctattttttttgtatttttagtagagatgggttttcaccgtgttagccaggatggtctccatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc s panTro1.chr19_random 55097507 305 - 57627672 GACACATACttttttttttttttgagatgcagtctcgctctgtagcccaggctggagtgcggtggcgtgatcttggctcactgcaagctccgcctcccgggttcacgccattcttatgcctcagcctcccgagtagctgggactacaggctcacaccaccacgcccggctattttttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctccatctcctgaccttgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggcc a score=1007.0 s hg17.chr17_random 406521 6 + 2618010 gaagac s panTro1.chr19_random 55097812 6 - 57627672 GAAGAC s canFam1.chrUn 6347347 6 + 91062872 GAACAT a score=14082.0 s hg17.chr17_random 406527 65 + 2618010 acatacttttaaaaatattatttttacattgatttggtaaattcttagaa------ttgctgggtcagagc s panTro1.chr19_random 55097818 65 - 57627672 ACATACTTTTAAAAATATTATTTTTACATTGATTTggtaaattcttagaa------ttgctgggtcagagc s mm5.chr11 121416395 70 + 121648857 ATATTCTTCTTTGAGCATTA-TTTAATGTTGATTTTTTTAATCCTTAGAAACAGTGTGGCTGGGTCACAGA s canFam1.chrUn 6347353 68 + 91062872 ACGTACTTCTGCAAACATTGCTTTTTCATGGGTTGACTAACTCTTAAGTG---GCGCTGCCAGGTCAGAGG a score=0.0 s hg17.chr17_random 406592 67 + 2618010 cagacgcgcttgcaattttgttaagtgcagtgaactctcctccatcgaagtttgtgctgttccgtgc a score=3371.0 s hg17.chr17_random 406592 23 + 2618010 cagacgcgcttgcaattttgtta s panTro1.chr19_random 55097883 23 - 57627672 cagacgcgcttgcaattttgtta s mm5.chr11 121416465 23 + 121648857 TTTGTGTATTTGTAGTTTTATTA a score=4211.0 s hg17.chr17_random 406615 44 + 2618010 agtgcagtgaactctcctccatcgaagtttgtgctgttccgtgc s panTro1.chr19_random 55097906 44 - 57627672 agtgcagtgaactctcctccatcgaagtttgtgctgttccgtgc a score=25782.0 s hg17.chr17_random 406659 210 + 2618010 tcccgccagcagcaggcgaggctg---------gcctccggcaggttgtcgaaagcttggctttcaccgagcagatgtatgaaaactggtatctcagtgtagttttagtctttaatttaccttttgatgaatcactctgagcatctcttatatgatgaagggtcatttttattcatttttttgtgaacaatttgtttgttgatctgttAGATTTCTTTG s panTro1.chr19_random 55097950 210 - 57627672 tcccgccagcagcaggcgaggctg---------gcctccggcaggttgtcgaaagcttggctttcaccgagcagatgtatgaaaactggtatctcagtgtagttttagtctttaatttaccttttgatgaatcactttgagcatctcttatatgatgaagggtcatttttattcatttttttgtgaacaatttgtttgttgatctgttAGATTTCTTTG s canFam1.chrUn 6347421 194 + 91062872 TCACGCCAGCAGCGGGGGTGGATGCCTGGACCCGCCCCTAGAGCATTGCCAAACTCTTGGCTTTAGCTCATCAGATAAATGAAAAATAA-----------------------CAGTTTCTCCTTTTCTGAATGAGTTTACACGTCTC--ATATGTTCACGGGCACTTGCATTTCTCTCTTTGGTGGCCTGTTGGTTCACTCAGGGGCCAGAGCTCGCTG a score=8565.0 s hg17.chr17_random 406869 92 + 2618010 GCTATAAAGATTAGCTCTCCGTCTGAGGTAGGAATTGCTTGTATGTTTTCCCCGTGTCATTTGTCTTTCAACTTTGTTTTGTTGTAGGTGTT s panTro1.chr19_random 55098160 92 - 57627672 GCTATAAAGATTAGCTCTCTGTCTGAGGTAGGAATTGCTTGTATGTTTTCCCCGTGTCATTTGTCTTTCAACTTTGTTTTGTTGTAGGTGTT a score=33408.0 s hg17.chr17_random 406961 317 + 2618010 TTGGCCATGAAAAAAATATTTCGGGCAAAAACTTTTCATCTGTTCTC---CAGCTTCTGGGCTTTGTGGCGGGGTATGGAAGGGCTTCCCCAGGCTGGGTCATGGGGGCCCCATGCTCTCTGTGCTCTTGTG----GTTTTGCTCCCT-AGCATTCACACTGTGGCCCTGTAGGGTCCTGCTGGTGGCTGGGGTGAGGTGTGCATGTAACTGAAGGTGGTCACCTAGTGTTTGAATATCGTTACTAATAATTCGTCTTTTCACCACTGACTTGAGGTGCCGCCTTTGTCACATGCTAGCAGCTCATACACGGATTTAGGTTTTTT s panTro1.chr19_random 55098252 317 - 57627672 TTGGCCATGAAAAAAATATTTCGGGTAAAAGCTTTTCATCTGTTCTC---CAGCTTCTGGGCTTTGTGGCAGGGTATGGAAGGGCTTCCCCAGGCTGGGTCATGGGGGCCCCACGCTCTCTGTGCTCTTGCG----GTTTTGCTCCCT-AGCATTCACACTGTGGCCCTGTAGGGTCCTGCTGGTGGCTGGGGTGAGGTGTGCATGTAACTGAAGGTGGTCACCTAGTGTTTGAATATCGTTACTAATAATTCGTCTTTTCACCACTGACTTGAGGTGCCGCCTTTGTCACATGCTAGCAGCTCATACACGGATTTAGGTTTTTT s canFam1.chrUn 6347881 265 + 91062872 CTGGCCGTGG-------ATTTCTAAGGAAAGATTTTCATCTTTTCTTTTATGGCTTCTAGATTCTGAGGC----TATAGAAGACTTTC------CTGTATTTT------------CTCCCAGTGCTGTGGGGTCCCGATCTGCACCATGGGCATTTCCAAC----CCTTTTAGGGTCATGCTGGCGTCT--GGTGAGCCGTGTGCCCAGCCCACAGTGCTTGCCTGGTGGTGCAAGGGTGG---------------TTTTCACCAC--GCTCTAGGGGGCACCTCTCCTGCGT-CCCGCATCCCCTGTGCAGGTGTGC------- a score=3932.0 s hg17.chr17_random 407278 1119 + 2618010 TCTGAACTCTATTCTGTCCGTGAGTCTGGCTAGGCAGGTGccaggaagtagttaataccttgtgcctgttttgcagacaggaacactgagatagaggcaatatcttgcccgcggcctgacagacagtaagtagggtggcaccaagcttcagaccc--cagggtcccatcaggcgccccactcctcctgcccctgtgttatCATCAGGGCTCCTTCTTCCTCTCATTGGTCATCGTCAGGAATGACTAGAAGGCACAGCATCCCTGTTGCTTATCTGTGAGCTCAAACCAAAAAGGCACCAAGTTATCTGGGGCTCACAGAGGCGCCGCATGGTACCAGTAGGCCTTGATACTTATCCCTGGAAGGAACCGTTTTCTGTTAAGGAACTTCACTAGATGGTTCTCTCACTCGAGGTGGAAGTTCGAGGCGGTCATTGTCTTCTGCTTCTCCCA-----------CACCCCCGCCAGCTGTCTGG-ACTTGCACATCTGGGG-TGCTGTTTGTCCCT-CCTTGCTGGGATTTCCCCACCCATCACCCACATGTGGACGCACAGCACCTGCTCCA-TGCCAGtcctctcggagaccctcctgaccctgcaggcagagtcgatgtcgctgtctcttgaggaccactggcctcctcatgcagcttccgtgggactgagataaggtgtctgcatgtcttcatctgcc-agctgagcccagaacaccttgaagccagggctgggctctgtttCTCGGGGTCTCCAGGGGTCAGAACCGCAGGTGACTGACTACACGGGGAACTGACTGAGGGGCCTCATGGCTTTTAGACTGTTTTATGAATTGCAGACATTTATTTAGCTCAGGACAAGCTGCATGCATGTCCAGTTTTATTTAACTTCTA-------------------------------AATACCTGGT----CTTCTGTCTGAGTCTGACTTCTGTGTTGCTGCCAATCAAAGGTGGCTGTGGGTTGTCT--------GGCACTGGAGGTGTCTCTGTGGGACCTTCCTGACTCCTCACTGCCCCAATTCTCCCCACATCCCTATGTGCCCAACACCCTACACCCACTGAGGCCCAACCTGGGCAGAATTACCAAGCAGGTGAGATTGGTTGGCCATTCTCCCAAAGCACCTTTTGCTGAGTCTCTTTCCTCA s canFam1.chrUn 6348146 895 + 91062872 TCTGGACCGTGACCTGCCCTTGCACCTGCTGAGGCGTGTGCTGCGATGTAG---GCCCCTTG----------------------------------------------------------------------GGGTGG--------TTGTGACCCTGCAGCGTCCC-------------CTCCTCCC---------------TGGGGGC------------------GAGCTGAGCAGGGGTGCCCAGAGGAAGGAACGTCCAGG--ACTCATCTGTGGGCTCAGATCTTGAGAGCTACCCCTTATCTGGGGCTCACAGGGGCACCATGTGGCACT-GCTGGCCGAGATATGCATCTTGAAAGGGAACAAGTCTTTGGCCAG-AGTTTTGCTAGGTTGGTCTTTGACCCGAGGTGAA-----------------GTCCCTGGTCCTTCCCAGGGAGGGAAGGCACTGCTCCCCAGTGCCGAACGCTTGCAGAAAGGGGGGTGTTCCTTGCCCTTTCCCTGCCGGGAATGTCCTGCT-GCAGCTCCCCTGGGAGCACACGTCACCTGCTCAGGTGTCACTCTGC-CTGAGGCCCTGCTGACCCC---------------------------TGGGAA-----GACCTCCC-----------------------------TGCCCATGAGTCCTTATCTGCCCACCTGAGCTCCGAGCACCCAGCCGC-AGAGCCGG-CGCCACTTCTCAGGGTCCCCAAGGCTC-----CGAAAGTGAGT-------------------TGAGGGCCATCGTGGATCTCAGAAGTGTTCACGGATCGGTAACCGTCA-----CGCAGGGCGGGCCGCAGGCACACACAGCTTCGCTGAATCCCCAGGCCAGGTGGCTTGTGGCATCGTGTCCCGTCAGTAGCTGCTTTCGCTTTCCTGTGAGCCTG-CCTCCGTGTCGC-GCCTCCCGGCCATGTGCGGGGACAGTCCCGCCGCGGAGCACCGGGAGTGTCTGAGTGGCCCATGCCTGCCTCCC----GCC----------------------GTGGCCCACAGCCTGC--TCACGGAG--CCACGCTGGGCAGGC------GGTGGAGCAGGCCGCCTGGCT-TCCCCTCTGGGTGCTCCCCG--GAGCCTCCTTCCC-- a score=-552.0 s hg17.chr17_random 408397 206 + 2618010 CCCCTGTTCTCCCAGCTCATGGTCAGCTGACCCCTTGGGTATGTTAGTGACTCATAGCTTGGGTGTTTTTCCTTCCTGGGGGTATTTGTTT--TCTGTCAGGAGACCCTAGAACATCAGGAAGTACCCCC--GCCCCACCAGGTTCCCCAGCCAGCCACTGATATCGGTGAAGCCGAGGCCAGCACTTACGAGAGCCTCCAGGATCTGCA s canFam1.chrUn 6349041 177 + 91062872 -------TTTCCTAACTCACGGTCAACAAACCCCTTGGACATGTTGGTGGCTCACGGC---------TTTTCCTGCTTGGGGTGCCCGTCT--GCTGGGGGG-----CTCGGAGGTCAGCAGGTGCTCAC---CACCCCCTGCTGCCACAGCCAGCTTCCGGCATCGGTTAGAC--AAGCCTGCATGT-----GGGCATCAGCAGCTGCG s danRer1.chrNA 182549682 198 - 390413307 CCCCTTTGCACTCCACCTAGGGGCCTCTGACCCC-------AGCAAGCTACCCAGGGGTCCA-----CCTCTCTCCTTGGACTTGAAGTATAGGCCCAAGAGTGCCCCCTGGCCCTCACCTAGGGGCCTCTGACCCCACCAAGCTACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTAGAGGCCCAAGAGTGCCCCCTGGTCCTCCA a score=-6411.0 s hg17.chr17_random 408603 203 + 2618010 --GAGGAACACACACCTCCAACTGTCAACTGTCAACTGTGCTGAAGCCACACGT--GGGGGACAGGCAACGTGCCCATGCCCTCTGCTGGACTTGGCACTGTGTGCGTGACACCCA-GCTCCCCT--CGGTGCAG---------------CCTGGCAAATCCATCTACCCTGGTGTCTGAAGTTTGCCCATGGTCTTTGGCCAGGGGCTGTGGAAGGGCCTCCGG s canFam1.chrUn 6349218 176 + 91062872 --GGGGAAGCTGCTCTCTGCACCCCCACCTTCCACCCAAAGTGG---CACAGGTCCAGGGGGGATGGAGCAAGCCCGTGTCCCCT----------------TGGGGGCCACAGGCACGCTCTCCTGGCAGTGCAG--------------TCCCGGCAGA-CTGCCCACCCTG-----------CTGCCCATGGCCTGCGGAC-GACACTGTGGGATTCACCCTG- s danRer1.chrNA 218917209 175 + 390413307 TAGGGG--------CCCCTGACCCCAGCAAGCTACCC-------------------AGGG------------GTCCACATCTCTCCCTGGACTTGCAG---TGTAGGCCCCAGGGT-GC-CCCCTGGCCCTCCACCTAGGAGCCTATGACCCCAGCAAG-----CTACCCAGAAGACCACCTCACTCCCTGGACTTGTAGTA-TAGGCCCCAGGGGAACCCCTGG a score=948.0 s hg17.chr17_random 408806 205 + 2618010 GGACTGAAGGTCGGGACCCATTTGGGGTCATTGAGAGTAAATCGACTTGTTAATGGGG--CATCCTCCTCAACCCACTCCTCAGGGCCCCACATCCACGCTCACCAACTGCACATGCAGACCCAGGAGGTGCATGAGCTGAAGTCTGTGGGCCGCAGAGCCGTGGGCTCGGAAGAAGCACAGCCCACCATGC----CGTGGATCTCCACGC s canFam1.chrUn 6349394 186 + 91062872 -----------CAGGGGACACCTGGGACCAGCGACAGTCAGCCTGGGGGTCAGCAGAGGCCCTCCTCGTCGGCTGCGTCCGCAATCCCGCCCGG-GAAGCCCCCCGGC--CCCGTGCAG-----GGCGATGCGC-CCCTGGAACCTGCGGGCCACAGAGCCTCGGCC-----GGAGCCGCCCCCAAACACGCGCGGCGTGGAGCTGGGCGC a score=2882.0 s hg17.chr17_random 409120 20 + 2618010 AGTAAGACAGCG-GTTTGT-CT s mm5.chr11 121418051 22 + 121648857 AACAAAACAGCATGTTTGTGCT s rn3.chrUn 69951573 22 - 75822765 AACAAAACGGCATGTTTGTGCT a score=130229.0 s hg17.chr17_random 409140 521 + 2618010 TAGCTGTATCTCGTTAGGGAGTTCCATCCCAGTCATATTAAAAGCACCAT-----GCCGCATGGCACAGAGTGACAACAAATTCCTTC----AAGATAAAGG--AACCCTAAAACTGTAAGAACTCGAAGGTCTC---------------GTCTGCGATGCA------------GTTTGTCTGGGGCAGGGGAGGGATCTGCCCGGTGTG---------GCTCTGGCCGCAGGCAGG----AAGCTCCCTGGAGCCCATTCACTCCCAGCCCCCATCCTGCACCCCCACGTCCCACTCTGTGACTTGCCTGATTAAAGCGTCAGGGAATTAAAGGGGGAATTGGAGGGCAGCTGCAGCTACACATGAAATGAACAAGGATGCGCTTTTCCTGGTGAACGATGC-TTGCTGGGTGCCCTGTCCCCTAAGGACATCTGAGTCAGAGCCAGACAAATGGGAGAAATTTGTCTGGGG-ATTAGGAGACCTTTGATGCCTCATCCCTGTGGAACTACATGGAGCTCATTCTGCAAATCACCTTCTCCTGCCTCCTCTGA--GGTGACTTAA-GACTCCGTTC s panTro1.chr19_random 2586844 522 + 57627672 TAGCTGTATCTCGTTAGGGAGTTCGATCCCAGTCATATT-----CCCCATTACGTGCCGCATGGCACAGAGTGATAACAAATTCCTTCCCCTAA----AAGG--AACCCTAAAACTGTAAGAACTCGAAGGTCTC---------------GTCTGCGGTGCA------------GTTTGTCTGGGGCAGGGGAGGGGTCTGCCTGGTGTG---------GCTCCGGCCGCAGGCAGGCAGGAAGCTCCCTGGAGCCCATTCACTCCCAGCCCCCATCCTGCACCCCCATGTCCCACTCTGTGACTTGCCTGATTAAAGCGTCAGGGAATTAAAGGGGGAATTGGAGGGCAGCTGCAGCTACACATGAAATGAACAAGGATGCGCTTTTCCTGGTGAACGATGC-TTGCTGGGTGCCCTGTCCCCTAAGGACATCTGAGTCAGAGCCAGACAAATGGGAGAAATTTGTCTGGGG-ATTAGGAGACCCTTGATGCCTCATCCCTGTGGAACTACATGGAGCTCATTCTGCAAATCACCT---CCTGCCTCCTCTGA--GGTGACTTAA-GACTCCGTTC s mm5.chr11 121418073 523 + 121648857 CAGTTTTATCTCATTAGGGAGTTACATGTTCTTCATATTCAAAATACC--------CCGTGTGTGAATAATCAATGATAAATTCCTTC----AA----AGGGAAAACCACAGGCCCTTCAGAGCCTGAAAGTGTCCATCTATGGGCTACAATTGGCTATGAAGGCGGGGTGGGTGTCTGTTTTGAGCAGGGTAGGG----TCACTGAGAG---------ACATTGGCCA-AGTTGGGC---TGGCTCCCTGGGGTCAG--------CGGCCACCGTCTCTCA--CTCACTTCCTTCTCTGTTATTTGCATGACTCAAATGTCAGGGAATTAAAAGGAGAATCGGAGGGTAGAAGCAGTTAACTATGAA------CGGGATGCACTTTT-CTGGTGAATGATGCTTTGTCGGATGACTTACTCCCTAAGAATGCCTGAGTCCGATCCAGACAAATGGAAGAAATTAGTCTGGGATGTTAGGAGACCCTTGATGCCTTGTCTCTATAGACGCACATGGAGCTTATTCTG-AAACCACGTTCTCCT-CCTGTGCTGCT-GATGCTTCAG-AGCTCTGCTC s rn3.chrUn 69951595 514 - 75822765 CAGTTTTATCTCATTAGGGAGTTACGTGTTCTTCATATTCAAAATACC--------ACGTGTGTGAATAATCAATGATAAATTCCTTC----AA----AGGGAAAACCACAGGCCCTTCAGAGCCTGAAAGTTTCCATCTATG-------GGCTACAATTGG------------CTATG---AAGACAGGGTGGGTGTCTGTTTTGAGCAGGGTAGGGTGCACTGGCCA-TGTTGGGT---TGGCTCCCTGGGGTCAG--------CAGCGATTGTCTCTCA--CTCACTTCCT--TCTGTTATTTGCATGACTCAAATGTCAGCGAATTAAAAGGAGAATCGGAGGGTAGAAGCAGTTAAACACGAA------CGGGATGCACTTTTCCTGGTGAATGACGCTTTGTTGGATGACATATTCCCTAAGAATGCCTGAGTCAGATCCAGACAAATGGAAGAAATTAGTCTGGGATATTAGGAGACCCTGGATGCCTTGTCTCTACAGACACACATGGAGTTTATTCTG-AAACCACTTTCTCCT-CCTGTGCTGATGGGGGCTTCAG-GGCTCTGCTC s canFam1.chrUn 6349737 420 + 91062872 GAGCTGTGACTCCTCGGGGAGCGAGGACGCGGCCACACGCAA--CACC--------GCGGCTCGCAATGCGTGGTGAC-AGCTGCTTC----AG----AGGG--AAGAGCACCCGCTCTGAGACCCGGAACTTTC-------------------------CA------------TCCTG------GTGGAGTGGGGGTC---------------------------CCGTGGGCAGG----AAGCCTGC-------------------ACATCCACCCTGCACGCGCATTTCCC-TTCTGAGAGTTGGGGGGTCGAAGAGCCGGGGACTT--GGGGGGAACGGGAGGGT-----------CCCGGGGC------AAGGGTGCGCTCTCCCTGCTGGATGCTGT-TCTGAGGGTGAC--AGCCCCGAAGAGTGTCTGAGGCAGAGCCACATGGACGCGAGACATTAGTATGCGA-AGCTGAAGGGCCCTGAGGCCT----------------CCTGGACACCACTCTG-GCCTCAGTCTCCCCTCAGTCCACTGC--CGTGATGGGGAAACTTCACTC a score=2524.0 s hg17.chr17_random 409661 19 + 2618010 TCTTCTGACCTGTGCTTCA s panTro1.chr19_random 2587366 19 + 57627672 TCTTCTGACCTGGGCTTCA s mm5.chr11 121418596 11 + 121648857 --------CCCGCACTTCA s canFam1.chrUn 6350157 17 + 91062872 CCCTCT--ACTGGACCTTG a score=8748.0 s hg17.chr17_random 409680 70 + 2618010 TGGGCCTTCCGTGGAGCCCCAGGCCGCT--GGCTGCCTGGGGTGACCATGTCCACTTGTGTCAACCAACACG s panTro1.chr19_random 2587385 70 + 57627672 TGGGCCTTCCGTGGAGCCCCAGGCCGCT--GGCTGCCTGGGGTGACCATGTCCACTTGTGTCAACCAACACG s canFam1.chrUn 6350174 70 + 91062872 CAGCTCCTCCTGAGGGTCCCAGGGAACCAGGGCTG-TTGTGCTAGCCTCGTCCACACA-GTGAACAAACACG a score=673.0 s hg17.chr17_random 409750 7 + 2618010 TGAGCCT s panTro1.chr19_random 2587455 7 + 57627672 TGAGCCT a score=10884.0 s hg17.chr17_random 409757 76 + 2618010 GAGAGGCTGGAGCTCAGAATACACCCTGGGGCACGG---------------GGACAAG-----------TCCTGGGCAGTGGCGGGAGCTCTGTTTGTCATT s panTro1.chr19_random 2587462 76 + 57627672 GAGAGGCTGGAGCTCAGAATACACCCTGGAGCACGG---------------GGACAAG-----------TCCTGGGCAGTGGCGGGAGCTCTGTTTGTCATT s mm5.chr11 121418659 102 + 121648857 CAGAGGACTAAGCTTTAAATGGACCCTGGGGTAGGGAAAACATCTATAAGAGGACAGAATATAGAGACTTCGAGGGCAGTAGCATAAGCTCTACTTGTCCTT a score=23815.0 s hg17.chr17_random 409833 256 + 2618010 TTCCTTCACTTCACTCAGACACACTTCAGCAAGTGTGTCTGAGCCAACATAGAAAGATGGAGCAGCAATTCAGAAGCATCTCTCCTGAAGACAGAAGGCCAGTGCCCAGCTTCCTGTCACTCACTCGAGAGCATTGGGCACCTGCTGGGGGCTGCATGAGCTGCCAGTGAGCAGACAGGCAACGTCCCAGTGCTCCAGGGATGCGTGTTCTATCTGGGCAGAGACAACAGCAACCAGCAGACAAGAAACGCCGCAG s panTro1.chr19_random 2587538 256 + 57627672 TTCCTTCACTTCACTCAGACACACTTCAGCAAGTGTGTCTGAGCCAACATAGAAGGATGGAGCAGCAATTCAGAAGCATCTCTCCTGAAGACAGAAGGCCAGCGCCCAGCTTCCTGTCACTCACTCGAGAGCACTGGGCACCTGCTGGGGGCTGCATGAGCTGCCAGTGAGCAGACAGGCAACGTCCCAGTGCTCCGGGGATGCGTGTTCTATCCGGGCAGAGATAACAGCAACCAGCAGACAAGAAACGCCGCAG a score=13698.0 s hg17.chr17_random 410089 119 + 2618010 AGTGCTGTGTGCTGGGTGCCGGGCGACGCTCAGGGCGGCC-GTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGG-----------GCGAAGCTCAGGGCGGCCCTG------------CGGGCATCCGTGTCAGAGTGCTGT s panTro1.chr19_random 2587794 119 + 57627672 AGTGCTGTGTGCTGAGTGCTGGGTGACGCTCAGGGTGGTC-GTCTGGCCATCCGTGTCAGAGTGCTGTGTGCCAG-----------GCGACGCTCAGGGCGGCCCTG------------CGGGCATCCGTGTCAGAGTGCTGT s danRer1.chrNA 156389812 142 - 390413307 AGAGCTGTGTGTGGTGTGGTGGCTGAGGCTCAGGGCTGCTAGCCAGAGCTTGCTGGTTTTATGGCTGTGAGTCAACACCATTGCGCACTTAACCCAGGGCTGCTCTGGTGGAACTGGCCCTGAAATACGT-CCAGAGTGCTGT a score=19558.0 s hg17.chr17_random 410208 230 + 2618010 GTGCCGGGCGATGCTCAGGGCGGCCGTGCGGGCATCCATGTCAGAGTGCTGTGTGCCGGGCGGAGCTCAGGGCGGCCCTGCGGGCATCCATGTCAGAGTGCTGTGTGCCGGGCGATGCTCAGGGCGGCCGTGCGGGCATCCATGTCAGAGTGCTGTGTGCCGGGCGACAGTCAGGGCAGCCGTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGGGCGACGCTCAGGGCG s panTro1.chr19_random 2587913 230 + 57627672 GTGCCAGGCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGGCCGACGCTCAGGGCGGCCGTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGGGCGACGCTCAGGGTGGCCGTGCGGGCATCCGTGTCAGAGTCCTGTGTGCCGGGCGACGCTCAGGGCGGCCGTGTGGGCATCCATGTCAGAGTGCTGTGTGCCGGGCGACGCTCAGGGCG a score=14673.0 s hg17.chr17_random 410438 175 + 2618010 GCCGTGCGGGCATCCATGTCAGAGTGCTGTGTGCCGGGCGGAGCTCAGGGCGGCCCTGCGGGCATCTGTGTCAGAGTGCTGTGTGCCGGACGAAGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGGGCGACGCTCAGGGCGGCTGTGCGGGCATCTGTGT s panTro1.chr19_random 2587831 175 + 57627672 GTCGTCTGGCCATCCGTGTCAGAGTGCTGTGTGCCAGGCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCAGGCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGGCCGACGCTCAGGGCGGCCGTGCGGGCATCCGTGT a score=13705.0 s hg17.chr17_random 410613 173 + 2618010 CAGAGTGCTGTGTGCCG-------GGCGACGCTCAGGGCGGCCGTCTGGGCATCCGTGTTAGCGTTCTGTGTGCCAGGCGATGCTCAGGGCGGCCGTGCGGGCATCCATGTCAGAGTGCTGTGTGCCGGGCGACGCTCAGGGCAACCGTGCAGGCATCCGTGTCAGAGTGCTGTGTGCCG s panTro1.chr19_random 2587791 180 + 57627672 CAGAGTGCTGTGTGCTGAGTGCTGGGTGACGCTCAGGGTGGTCGTCTGGCCATCCGTGTCAGAGTGCTGTGTGCCAGGCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCAGGCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCG a score=1936.0 s hg17.chr17_random 410786 35 + 2618010 GGCGACAGTCAGGGCAGCCGTGCGGGCATCCGTGT------------ s panTro1.chr19_random 2587971 35 + 57627672 GCCGACGCTCAGGGCGGCCGTGCGGGCATCCGTGT------------ s galGal2.chrUn 6247023 47 - 165033910 GTGAACGGCCAGCACTGCTCTGGGGGGATAGGGGGGACACGACACGC a score=12006.0 s hg17.chr17_random 410821 156 + 2618010 CAGAGTGCTGTGTGCCG-------GGCGACGCTCAGGGCAACCGTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGGGCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGGACGAAGCTCAGGGCGGCCCTGCGGGCATCCGTGT s panTro1.chr19_random 2587791 163 + 57627672 CAGAGTGCTGTGTGCTGAGTGCTGGGTGACGCTCAGGGTGGTCGTCTGGCCATCCGTGTCAGAGTGCTGTGTGCCAGGCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCAGGCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGT s galGal2.chrUn 6247070 121 - 165033910 TGGAGGGCTGTTTGAC--------GGCTGCGATGAGGGAAAGGGACGGAGTAACCCAA--AGGAAAATAGGTCCCGGGTGCTGC-CAGTGGAGCACAGCGAG-------------GTGTCACCTGCAGGGGGA------------------GGGCATCCGCCT a score=0.0 s hg17.chr17_random 410977 4 + 2618010 CAGA a score=382.0 s hg17.chr17_random 410977 4 + 2618010 CAGA s panTro1.chr19_random 2587791 4 + 57627672 CAGA a score=50641.0 s hg17.chr17_random 410981 549 + 2618010 GTGCTGTGTGCCG-------GGCGATGCTCAGGGCGGCTGTGCGGGCATCCGTGTCAGAGTGCTG--TGTGCCGGACGAAGCTCAGGGCGGCCCTGCGGGCATCCATGTCAGAGTGCTGTGTGCCGG---GCGATGCTCAGGGCGGCTGTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGGGCGACGCTCAGGGCAACCGTGCGGGCATCCGTGT-------CAGAGTGCTGTGT-GCCGGGCGGAGCTCAGGGCGGCCGTGCGGGCATCCATGT-CAGAGT-GCTGTGTGCCGGGCGACGCTCAGGGCGGCCGTGCAGGCATCCATGTCAGAGTGCTG--TGTGCCGGGCGACAGT-CAGGGCA-GCCGTGCGGGCATCCGTGTCAGAGTGCTGTGT-GCCGGGCGATGCTCAGGGCGGCTGTGCGGGCATCTGTGTCAGAGTGCTGTGTGCCGGGCGACGCTCAGGGCGGCCGTCTGGGCATCCGTGT-------CAGAGTGCTGTGT-GCCGGGC--GACTCTCAGGGCGGCCGTGTGG----------GCATCCGTGTCAGCGTTCTGTGT-GCCGGGCGACTCTCAGGGCA s panTro1.chr19_random 2587795 556 + 57627672 GTGCTGTGTGCTGAGTGCTGGGTGACGCTCAGGGTGGTCGTCTGGCCATCCGTGTCAGAGTGCTG--TGTGCCAGGCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCAG---GCGACGCTCAGGGCGGCCCTGCGGGCATCCGTGTCAGAGTGCTGTGTGCCGGCCGACGCTCAGGGCGGCCGTGCGGGCATCCGTGT-------CAGAGTGCTGTGT-GCCGGGCGACGCTCAGGGTGGCCGTGCGGGCATCCGTGT-CAGAGT-CCTGTGTGCCGGGCGACGCTCAGGGCGGCCGTGTGGGCATCCATGTCAGAGTGCTG--TGTGCCGGGCGACGCT-CAGGGCG-GCCCTGTGGGCATCCGTGTCAGAGTGCTGTGT-GCCGGGTGACGCTCAGGGTGGTCGTCTGGGCATCCGTGTCAGAGTGCTGTGTGCCGGCCGACGCTCAGGGTGGCCGTGTGGGCATCCGTGT-------CAGAGTGCTGTGT-GCCGGGC--GACGCTCAGGGCGGCCATGTGG----------GCATCCGTGTTAGCGTTCTGTGT-GCCAGGCGATGCTCAGGGCG s galGal2.chrUn 6247191 525 - 165033910 GCTCCCTGGGACG-------GA--------GGGACAGCTGCCT---CCCCAGCGACACAGCACAGGCTGTGCAGGATG-----CAGTGTGGCTGTGCAGG-----------ATATGCAGTGTGGCTGTGCAGGATATGCAGTGTTGCTGTGCAGGACTCAATGTGGCTGTGCAGGATG------------CAGTGTGGCTGTGCAGGAATCAATGTGGCTGTGCAGGATGCAGTGTGGCTGTGCAGGAATCAATGTGGCTGTGCAGG-----ATATGCAGTGTGGCTGTG---CAGGAGATG--CAGTGTGGCTGTGCAGGAATCAATGTGGCTGTGCAGGATATGCAGTGTGGCTGTGCAGGATATGCAGTGTGG----CTGTG-CAGGGCGCAGTGTGGCTGTGCAGGACTCAATGTGGCTGTGCAGGACTCAATGT-----GGCTGTG---CAGGAGATG--CAGTGTGGCTGTGCAGGACTCAATGTGGCTGTGCAGGATGCAGTGTGGCTGTGCAGGAGATGCAGTGTGGCTGTGCAGGAGATGCAGTGTGGCTGTG-CAGGGCGCAGTGTGGCTGTGCAGGACTCAATGTG a score=31627.0 s hg17.chr17_random 411530 307 + 2618010 GCCGTGCGGGCATCCGTGT-------CAGAGTGCTGTGT-GCCGGGCGACAGTCAGGGCAGCCGTGCGGGCATCCGTGT-------CAGAGTGCTGTGT-GCCGGGCGACTCTCAGGGCGGCCGTGTGGGCATCCGTGT-------CAGA--GTGCTGTGT-GCCGGGCAACGCTCAGGGCGGCCGTGTGGGCATCCGTGTCAGAGTGCTGTGTGCCGGGCGACGCTCAGGGCGGCTGTGTGAGCATCCGTGTCAGGTGGGCTGCTGGATGCTGGGGGGTCACTGACTCACCCCTAGGGCTG-AGGGCGGGTGGGTTACTGGCCTCCACATGGG s panTro1.chr19_random 2588143 307 + 57627672 GCCCTGTGGGCATCCGTGT-------CAGAGTGCTGTGT-GCCGGGTGACGCTCAGGGTGGTCGTCTGGGCATCCGTGT-------CAGAGTGCTGTGT-GCCGGCCGACGCTCAGGGTGGCCGTGTGGGCATCCGTGT-------CAGA--GTGCTGTGT-GCCGGGCGACGCTCAGGGCGGCCATGTGGGCATCCGTGTTAGCGTTCTGTGTGCCAGGCGATGCTCAGGGCGGCTGTGCGAGCATCCGTGTCAGGTGGGCTGCTGGATGCTGGGGGGTCACTGACTCACCCCTAGGGCTG-AGGGGGGGTGGGTTACTGGCCTCCACATGGG s galGal2.chrUn 6247716 315 - 165033910 GCTGTGCAGGACTCAATGTGGCTGTGCAGGATGCAGTGTGGCTGTGCAGGTTTCAGTGTGGCTGTGCAGGACTCAATGTGGCTGTGCAGGATGCAGTGTGGCTGTGCAGGACTCAGTGTGGCTGTGCAGGACTCAATGTGGCTGTGCAGGATATGCAGTGTGGCTGTGCAGGTTTCAGTGTGGCTGTGCAGGTTTCAATGTA------------GCTGTGCAGGTTTCAATGTAGCTGTGCAGGTTTCAGTGT-AGCTG---TGCAGGATGC---AGTGCCTCCATGCAGCCCCCTGAGCAGCAGCTCCCGCGTGCCTCTCTCCTCCAGAAGGG a score=5666.0 s hg17.chr17_random 411837 59 + 2618010 TGTGACAACCTGGCAGTGAGGGATGGTCATGCAGACATGTGTTGGGCATGGAGCATCCG s panTro1.chr19_random 2588450 59 + 57627672 TGTGACAACCTGGCAGTGAGGGATGGTCATGCAGACATGTGTTGGGCATGGAGCATCCG a score=14191.0 s hg17.chr17_random 411896 138 + 2618010 TGGTGGTGGAAGCCCTCCCATGCC----GGGCCGCGGGGCAGGGCTCTGGGAGAGGACGCAGGATCCCTCCCTG-----CATGTCTGTCTGCAGATCAGCTTCACCTGCCCC------CACCCTGGCAGTTCAATCTACTGTCATTAGACCCA s panTro1.chr19_random 2588509 138 + 57627672 TGGTGGTGGAAGCCCTCCCATGCC----GGGCCGCGGGGCAGGGCTCTGGGAGAGGATGCAGGATCCCTCCCTG-----CATGTCTGTCTGCAGATCAGCTTCACCTGCCCC------CACCCTGGCTGTTCAATCTGCTGTCATTAGACCCA s danRer1.chrNA 180636971 149 - 390413307 TTGCAGTAGAGGCCCAAGTGTGCCCCCTGGCCCTCCACCTAGGGTCCT----CAGAACCTAGGAATCTACCAAGGGGTCCACAACTATCCCTGGACTTGCAATAGAGGCCCCAGGGTGCCCCCTGGCAGTCCACCTAAGTGCCTCTGAACCCA a score=6372.0 s hg17.chr17_random 412034 62 + 2618010 CCTGCCCTCACCCTGGCCTGCAC--------------CCTTCAATCTACTGTTATTAGA---CCCACGGGGTTTCTTGG s panTro1.chr19_random 2588647 62 + 57627672 CCTGCCCTCACCCTGGCCTGCAG--------------CCTTCAATCTACTGTCATTAGA---CCCACGGGGTTTCTTGG s rn3.chrUn 69953115 76 - 75822765 CCTTCCTCATTTCTGGTCTGCACATTGACTACATGAACCCTTAAACTGCTGCTTATTGT---TCAACGGACTCTGATGG s danRer1.chrNA 180637120 65 - 390413307 GCTAGCT--ACCCAGGGCTCCACCT------------CTCTCAATGGACTTGCAGTAGAGGCCCCAGGAAGTCCCCTTG a score=169.0 s hg17.chr17_random 412096 9 + 2618010 TGATTA--AAC s panTro1.chr19_random 2588709 9 + 57627672 TGATTA--AAC s rn3.chrUn 69953191 11 - 75822765 AAGCCACTAAC a score=38562.0 s hg17.chr17_random 412105 150 + 2618010 GTGTGTGTTGCTCTCTGCACATCCAAGAACT---GCAGAAAGAGGTTTTTCTCATTCCTGTG--ATAGATGAAAGTGCAATTTTTAAAAACAGTGAAACTATTCCTGCACAAGAGAACTGTGACTGGATTCTGCCAGGGAGGAGCTGTGACCAGC s panTro1.chr19_random 2588718 150 + 57627672 GTGTGTGTTGCTCTCTGCACATCCAAGAACT---GCAGAAAGAGGTTTTTCTCATTCCTGTG--ATAGATGAAAGTGCAATTTTTAAAAACAGTGAAACTATTCCTGCACAAGAGAACTGTGATTGGATTCTGCCAGGGAGGAGCTGTGACCAGC s mm5.chr11 121419714 144 + 121648857 GTGTGTGCTG-TTTGTGAGTGTCCCAGACCCAAGACAGAAATAGGCTGTTCTC--TGGTATT--AAAGACAGAGATAATACTTTTCTAAGCAGTGAGAGTAGTCCTGCATATAAGAACTAGGATTGAAT--TGCCATGG----GCAAAGACCAGC s rn3.chrUn 69953211 148 - 75822765 GTGTGTGCTG-TTTGTGAATGTCCCAGACCCAAGACAGAAACAGGCCATTCTCACTCTGGTGGTAAAGACAGAGACGATACTTTTTTAAGCAGTGAGAGTATTCCTGCACAAAAGACCTAGGACCGCAT--TGCCATGG----GAGAAGACCAGC a score=2888.0 s hg17.chr17_random 412255 31 + 2618010 AGGGCAGAGACATGGGAGGGAAGAGCCGGCG s panTro1.chr19_random 2588868 31 + 57627672 AGGGCAGAGACACGGGAGGGAAGAGCCGGCG a score=64300.0 s hg17.chr17_random 412286 688 + 2618010 TCACCTCCAGGCCTCCTGCGCCCGAGAGGAGGGAAGAGCCGGTGTCACCTCCAGGCCTCCTGCACCCGAGGGGAGGAAGAGCCGGCGTCACTGGCCACAGGTGAGGAGGAGACTGGGTTGCCCAAGTAGGGTATGCAGGTCCATTCAAACGCACCCAGGGATGACTCATCCCCGCCAGCTGCTCTGGCAAGGCCGGGGGTCTCAGAGCTGGGGGCTGCAGCAAGCACACCAGCTCTCTGCTCCCGAGAGATCGTCCACAGGCCCCATCAAGATCCCTGGTCACCATAAAATTTAACTTCATAACTTATTGATAATAAATTATAAACAAAAGCCTCCTAATTTACACGCTTGTTGACTACTGAGTGCTTGGTGCAGTGAGTACGGCTGCTGCTGTACCAAAAACCACACAGATGAGAATCACTGTATAGGTGAGAACTGTGACTGCCCCTGATTTCTAGAGGCAGCAACTGAAGCTCAGGAGTGCTTGCGACTCAGCTGTCTCAGGCTGCAGAGCCCTCCTCGTAACCTTGCAGAGTACAATTTCGTCTTAGTGACTCCCCTGTATTCCAGCTCTTCCCCGGTGGAACAGGTCACCCCATCAACACACGCTTCATTAATACCCGGGGGAAGGTCCTGAGGGACTGAATGGATTATGAAGGAAAAACAAGCAGGAAAGCGAAAGGGGAAG s panTro1.chr19_random 2589075 688 + 57627672 TCACCTCCAGGCCTCCTGCGCCCGAGGGGAGGGAAGAGCCGGTGTCACCTCCAGGCCTCCTGCGCCCGAGGGGAGGAAGAGCCGGAGTCACTGGCCACAGGTGAGGAGGAGACTGGGTTGCCCAAGTAGGGTATGCAGGTCCATTCAAATGCACCCAGGGATGACTCATCCCCGCCAGCTGCTCTGGCAAGGCCAGGGGTCTCAGAGCTGGGGGCTGCAGCAAGCACACCAGCTCTCTACTCCCGAGAGATCGTCCACAGGCCCCATCAAGATCCCTGGTCACCATAAAATTTAACTTCATAACTTATTGATAATAAATTATAAACAAAAGCCTCCTAATTTACAGGCTTGTTGACTACTGAGTGCTTGGTGCAGTGAGTACGGCTGCTGCTGTACCAAAAACCACACAGGTGAGAATCACTGTATAGGTGAGAACTGTGACTGCCCCTGATTTCTAGAGGCAGCAACTGAAGCTCAGGAGTGCTTGCAACTCAGCTGTCTCAGGCTGCAGAGCCCTCCTCGTAACCTTGCAGAGTACAATTTCGTCTTAGTGACTCCCCTGTATTCCAGCTCTTCCCCGGTGGAACAGGTCACCCCGTCAACACACGCTTCATTAATACCCGGGGGAAGGTCCTGAGGGACTGAATGGATTAGGAAGGAAAAACAAGCAGGAAAGCGAAAGGGGAAG a score=7719.0 s hg17.chr17_random 412974 81 + 2618010 AGACCAGGCAGA-----GGACGCCCCAGCA-----CTAAAGTGAAAGATCCCTGATGGGCAGGGGCGGCGCGACCGGGCTCCCAAGACCGG s panTro1.chr19_random 2589763 81 + 57627672 AGACCAGGCAGA-----GGACGCCCCAGCA-----CTAAAGTGAAAGATCCCTGATGGGCAGGGGCGGCGCGACCGGGTTCCCAAGACCGG s danRer1.chrNA 135390343 79 - 390413307 AGACCAGGGAAAGAGGTGGACCCCTGGGTAGCTTGCTGGTGTCAGAGACCCCT-------AGGTGGAGGGCCAGGGGGCACGCTGG----- a score=12766.0 s hg17.chr17_random 413055 112 + 2618010 GTCCTGATCTGGGTTTTCGTGTAGCATGGTCACGTGTGGAGACCGGGGCTCCGGGGCTGTGGGCTGGGCTGACGCTGCCATGCGTGGGGGAAAGGGTGGCAAATTGTGGCCT s panTro1.chr19_random 2591193 112 + 57627672 GTCCTGATCCGGGTTTTCGTGTAGCATGGTCACGTGTGGAGACCGGGGCTCCGGGGCTGTGGGCTGGGCTGACGCTGCCATGCGTGGAGGAAAGGGTGGCAAATTGTGGCCT s danRer1.chrNA 135390422 97 - 390413307 GTCATGTACTGCAAGTCCAGGAAGAGAGGT---------------GGTCCCCTGGGTAGCTTGCTGGGGTCAGAGGCCCCTAGGTGGAGGGCAAGGGGGCACCCTGTGGCCT a score=3220.0 s hg17.chr17_random 413167 34 + 2618010 TGGCCTCTTCTGAACTTTCCAGTTCAGTTACTTT s panTro1.chr19_random 2591305 34 + 57627672 TGGCCTCTTCTGAACTTTCCAGTTCAGTTACTTT a score=13264.0 s hg17.chr17_random 413201 144 + 2618010 TCAAAAAGGTGCTTAGCCTTCCTTTTCAGGCCAACTTTAGTGTGACCTCTTCATCTTGGGACGCGGTGGGTGGCTTGTTACGGGGGCAGGTGTCACAAGGAGGGAGATGGTCT--------GTTTCTTTCAGTCAGGG-------GGTGGAGGAAAAGG s panTro1.chr19_random 2591339 143 + 57627672 TCAAAAAGGTGCTCAGCCTTCCTTTTCAGGCCAACTTTAGTGTGACCTCTTCATCTTGGGACGCGGTGGGTGGCTTGTTACGGGGGCAGGTGTCACAAGGAGGGAGATGGTCT--------GTTTCTTTCAGTC-GGG-------GGTGGAGGGAAAGG s danRer1.chrNA 259394570 153 + 390413307 GAAGAAAGGTGGAC------CCCTGGGTAGCTTGCTTGGGTCAGGGCCCCCTAGGTGGAAGGCCAGGGGGCACCCTGGGGCCTATACTGCAAGTACAGGGAGAGAGGTGGACCACTGGCTAGCTTTCTGGGGTCAGGGGCCCCTAGGTGGAGGGGAAGG a score=78743.0 s hg17.chr17_random 413345 837 + 2618010 ACTTCAACCTCTTCTCAGAACAAATGTTCTCTTAACGTTGCGCCTCATGCCAGTTCACTGTTTTAATAATAAAAAAAAGCTAAAACCATTGAAAGAAAAATAAGTAAACACATAAAGAACCGAAGGCCCTGAGCGCTGAAGGATGTGTAAGGACCCCCGGGGCTCTTCGAGGGGTTTCTGGGGATTGTGGGTGTCCTGGGAACTAAGATGCCTACTCTCGGAGTGGGGGAAGGAAGGATACAGCTTTCTGTCCCAGATTCCAAAGACTGAGGAACAACTGGGTTGTGCCCACTCAGAGAGATGCAGGGAGACCATGCCCGTCCATCCACCCACTCATGCTTGTCGGGCACCAGCCACATGCACGGTGCTGGGGCAGCCGGATGTGTCCGTTGGAGCCTGACCCCAGCGTCTCCTGTTAGTGCATCTCATTGTAGAGACGCTTCCTGGACAGGCATTGGCAAGGATGAGCACCTCAGTGCAGCCAGGACAAGTCCTTATCACAGACATTTGCCTCTGATCATCCTGTAAAAAGACTGTGTTCATTTTTGGGGGTTCCTAGTCCTGGGATTTTGCTTCCACCTTCAGGAAATGCACCTGGTGACTCTGCTGAGATCTTGCTAAGAACTCCTATCGCCATGATGAACACCTTGTCGTGGGGACGACTCTGTGAAAGGTTCCAGCTCTGTCTCCTGCCACAGCCTCTGAACTGGGATGTGAACCTTTCGGTGTCTGGCCATTATCACCCTGATGGTGAACTGGGCAGCCTTAAATTTCAATATTGAAGGGTCAATCACTGGAAACTATATAGACAAGTAGACGTCAGCATAGGTAACAATT s panTro1.chr19_random 2591482 837 + 57627672 ACTTCAACCTCTTCTCAGAACAAATGTTCTCTTAACGTTGCGCCTCATGCCAGTTCACTGTTTTAATAATAAAAAAAAGCTAAAACCATTGAAAGAAAAATAAGTAAACACATAAAGAACCGAAGGCCCTGAGCGCTGAAGGATGTGTAAGGACCCCCGGGGCTCTTCGAGGGGTTTCTGGGGATTGTGGGTGTCCTGGGAACTAAGATCCCTACTCTCGGAGTGGGGGAAGGAAGGATACAGCTTTCTGTCCCAGATTCCAAAGACTGAGGAACAACTGGGGTGTGCCCACTCAGAGAGATGCAGGGAGACCATGCCCGTCCATCCACCCACTCATGCTTGTCGGGCACCAGCCACATGCACGGTGCTGGGGCAGCCAGATGTGTCCATTGGAGCCTGACCCCAGCGTCTCCTGTTAGTGCATCTCATTGTAGAGACGCTTCCTGGACAGGCATTGGCAAGGATGAGCACCTCAGTGCAGCCAGGACAAGTCCTTATCACAGACATTTGCCTCTGATCATCCTGTAAAAAGACTGTGTTCATTTTTGGGGGTTCCTAGTCCTGGGATTTTGCTTCCACCTTCAGGAAATGCACCTGGTGACTCTGCTGAGATCTTGCTAAGAACTCCTATCGCCATGATGAACACCTTGTCATGGGGACTACTCTGTGAAAGGTTCCAGCTCCGTCTCCTGCCACAGCCTCTGAACTGGGATGTGAACCTTTCGGTGTCTGGCCATTATCACCCTGATGGTGAACTGGGCAGCCTTAAATTTCAATATTGAAGGGTCAATCACTGGAAACTATATAGACAAGTAGACGTCAGCATAGGTAACAATT a score=65762.0 s hg17.chr17_random 414306 713 + 2618010 GTTCCACCCTtgtctcaggtcattcttgccttgctttaaagaaatacttgaggctgggtaatttataaagaaaagaggtttaattggctcacggttctgcaggctttataggcaccatggtgccagcaactgtacagcttccggggaggcctccagaagcttacagtctgggcagaaggtgaaggaggagaaagagagagcaggaggtgctagccacataaaacagccaggtctctgagaactcagcctcttgaggacagcacaaggtgctgctaaaccattcatgagaaatccacccccatgatccagtcgcctccaccagaccctgccttcaatactggggattacaattcaacatgagatttgggcagggacaaaaacgccaattatatcaCCCCTTGAGGCCCTTGTTTTCTGTTTAATTATCTTGAagattcagggactcttaaggcacgacaggatcttagaaacccaaccttttccttttgaacacgaggaaactgaagtctggaataaagtggctcgtctgagtttcagcagcaggttCTAACAAGCTCTATTCTGTTCTTCCAGGATGGCACTCTCTACCTCACCTCATGACCGTGGTCCTTGAATCCCAAGTTTTCAGAAGACTCAGATAGAGAGGGGCTGCTCAAAGCTCTGGGCTGGAACCCAGAATGGCAGCCGTGGACTGGGTGGGAAATTTACAGCAG s panTro1.chr19_random 2592319 713 + 57627672 GTTCCACCCTtgtctcaggtcattcttgccttgctgtaaagaaatatttgaggctgggtaatttataaagaaaagaggtttaattggctcacgattctgcaggctttataggcaccatggtgccagcaactgtacagcttctggggaggcctctggaagcttacagtccgggcagaaggtgaaggaggagaaagagagagcaggaggtgccacccacataaaacagccaggtctctgagaactcaccctcgtgaggacagcacgaggtgctgctataccattcatgagaaatccacccccatgatccagtcgcctccaccagaccctgccttcaatactggggattacaattcaacatgagatttgggcagggacaaaaacaccaattatatcaCCCCTTGAGGCCCTTGTTTTCTGTTTAATTATCTTGAagattcagggactcttaaggcacgacaggatcttagaaacccaaccttttccttttgaacacgaggaaactgaagtctggaataaagtggctcgtctgagtttcagcagcaggttCTAACAAGCTCTATTCTGTTCTTCCAGGATGGCACTCTCTACCTCACCTCATGACCGTGGTCCTTGAATCCCAAGTTTTCAGAAGACTCAGATAGAGAGGGGCTGCTCAAAGCTCTGGGCTGGAACCCAGAATGGCAGCCGTGGACTGGGTGGGAAATTTACAGCAG a score=11575.0 s hg17.chr17_random 415019 107 + 2618010 TTTGCAGATGTAGACCCCACCCTGCTCCTCAGGACTTCAACACACCCACCCAGCCTATGCAGGCTTATGAGCTGTGAAGAAATTACATCAAGATTAGATGTCTTCTC s panTro1.chr19_random 2593032 107 + 57627672 TTTGCAGGTGTAGATCCCACCCTGCTCCTCAGGACTTCAACACACCCACCCAGCCTATGCAGGCTTATAAGCTGTGAAGAAATTACATCAAGATTAGATGTCTTCTC s danRer1.chrNA 177034508 87 - 390413307 TCTGCAGG-ATAGGCCCCAGGGTGCTCCCTGGCCCTCCA--------------CCTAT--AGGCCTCTGACCCCTGA--AAGCTAC-CCAGGAGTCCACCTCTCTTC a score=56389.0 s hg17.chr17_random 415126 623 + 2618010 AGCTGattttttt----aatttttaattttgttttaattacattaaaatttttaatttttttattttatagagacagggtctcactatatggcccagggtggtcttgaattcctgggctcaaacagtcttcccactttggcctcccaaagtgctgaggttacaggtatgagccacgatgcctggccTCAGCTGAATTTTAAGTCCATTGTTATTCAAGTTtttctaacttaattttatgagcttattaattagttcaatatgaaagtctgctgcagacaatctagagcatttctataccccactttattttatgaatacagatgcattgcttccaaatgagatattcgaaaataaaattcagtcctgtatcaaaaatagaatacactgtattcatgtttgttgtgtgacaaattgccctaaaccttagtgggttaaacagt-agatggttatctcctggtatctgtgggtcaggaatcgtggcatgagctctgcagtgtagggtctccctcaaggctgtcaggaatcagctgagactgcagtcatctcaaggctcaactggggcagaagttgcttacgagctcgctcagtggcttggcaggggttgttggggttccccaaggctgttc s panTro1.chr19_random 2593139 624 + 57627672 AGCTGa----tttaaaaaatttttaattttgttttaattacattaaaatttttaatttttttattttatagagacagggtctcactatatggcccagggtggtcttgaattcctgggctcaaacagtcttcccactttggcctcccaaagtgctgaggttacaggtatgagccacgatgcctggccTCAGCTGAATTTTAAGTCCATTGTTATTCAAGTTTTTCTAACTTAATTTTATGAGCTTATTAATTAGTTCAATATGAAAGTCTGCTGCAGACAATCTAGAGCATTTCTATACCCCACTTTATTTTATGAATACAGATGCATTGCTTCCAAATGAGATATTCGAAAATAAAATTCATTCCTGTATCAAAAATAGAATACACTGTATTCATGTttgttgtgtgacaaattgccctaaaccttagtgggttaaatagtcagatggttatctcctggtatctgtgggtcaggaatcgtggcatgagctctgcagtgcagggtctccctcaaggctgtcaggaatcagctgagactgcagtcatctcaaggctcaactggggcagaagttgcttacgagctcactcggtggcttggcaggggttgttggggttccccaaggctgttc a score=3292.0 s hg17.chr17_random 415749 33 + 2618010 tcctgagggccgcgggtcccgactggctgtttg s panTro1.chr19_random 2593763 33 + 57627672 gcctgagggccgcgggtcctggctggctgtttg s rn3.chr16 28576083 26 - 90224819 TCCTGAGGTCCTGAGGTCCTGG--GGTC----- a score=4284.0 s hg17.chr17_random 415782 8 + 2618010 ctggaggc s panTro1.chr19_random 2593796 8 + 57627672 ctggaggc s mm5.chr5 147722408 8 + 149219885 CTGAGCAC s rn3.chr16 28576109 8 - 90224819 CTGGGGTC s canFam1.chr14 8720569 8 + 63549963 CTGGGGAC a score=-1968.0 s hg17.chr17_random 415790 8 + 2618010 TTCT---CCTG s panTro1.chr19_random 2593804 8 + 57627672 ctct---cctg s mm5.chr5 147722416 11 + 149219885 TTCTGTGTCTG s rn3.chr16 28576117 11 - 90224819 CTGAGATCCTG s canFam1.chr14 8720577 8 + 63549963 AGTG---TATG s fr1.chrUn 40786013 8 - 349519338 TTAC---CCTG a score=12848.0 s hg17.chr17_random 415798 215 + 2618010 AGGGCCGCGGGTCCTCA---CTGGCTGTTCT------------------CCTGAGGGCCGCGGGTCCTGGCTGGCTG----------------TTCTCCT------------GAGGGCCGCGGGTCCTGGCTGGCTGTTCTCCTGAGGG------------------------------------------------------------CCGCGGGTCCTGGCTGGCTGTTCT---CCTGAGGGCCGCGGGTCCTGGCTGGCT-------------GTTCTCCT---------------GAGGGCCGCGGGTCCTGGCTGGCTGTTCTCCTGAGGGCCGCGGGTCCTGGCTGGCT s panTro1.chr19_random 2593812 215 + 57627672 agggcCACGGGTCCTGA---CTGGCTGTTCT------------------CCTGAGGGCCATGGGTCCTGGCTGGCTG----------------TTCTCCT------------GAGGGCCGCGGGTCCTGACTGGCTGTTCTCCTGAGGG------------------------------------------------------------CCGCGGGTCCTGGCTGGCTGTTCT---CCTGAGGGCCGCGGGTCCTGGCTGGCT-------------GTTCTCCT---------------GAGGGCCGCGGGTCCTGGCTGGCTGTTCTCCTGAGGGCCGCGGGTCCTGGCTGGCT s mm5.chr5 147722427 212 + 149219885 AGGGGCGGAGGTTCCCA------GCTGTTCTGTG---------------TCTGAGGGGCGGGGGTTCCCAGCGGTTC----------------TGTGGCT------------GAGGGGTGGGGGTTCCCAGCGGTTCTGTGTCTGAGGG------------------------------------------------------------GCGGAGGTTC---CCAGCTGTTCTGTGCCTGAGGGGTGGGGGTTCTCAGCGGTT-------------CTGTGCCT---------------GAGGGGTGGGGATTCTGAGCGGCTCTGTGCCTGAGGGGTGGGGGTTCC-TCTGT-- s rn3.chr16 28576128 219 - 90224819 GGGTCCTGGGGTCCTGAGATCCTGGGGTTCTGAG-------------GTCCTGAAGTCCTGAGATCCTGGGGTCCTG----------------AAGTCCT------------GAGGTCCTGGGGTTCTGAGGTCCTGAGGTCCTGGGGT------------------------------------------------------------TCTGAGGTCCTGAGATCCTGGGGT---TCTGAGGTCCTGGGGTTCTGAGGTCCT-------------GGGGTTCT---------------GAGGTCCTGGGGTCCTGAGGTTCTGAGGTCCTGGGGTCCTGGGGTCCTGGGG---- s canFam1.chr14 8720585 232 + 63549963 AGAGCCCCTCCTCCCCA---CT-GGTGTTCTCCGCCAGTCTGGTGATGTCCTGGTGAACATCAGCCCTGGTGGGCAC----------------TAGTCCT------------GGTGGGCGCTGGTCATGGTGAACATCAGCCCTGGTGG------------------------------------------------------------GCACTGGTCCTGATGAATGTCAGC---CCTGGTGAGCACTGGTCCTGGTGGGCG-------------CTTGTCCT---------------GGTGGGTGCTGGTGCTGGTGGGCGCTGGTCCTGGTGGCCACTGGTCCTGGTGGGTG s fr1.chrUn 40786021 215 - 349519338 ACAGGTTGGTACCCTGA---CAGGCTGTTAC------------------CCTGACAGGTTGGTACCCTGACAGGTTA----------------TTACCCT------------GACAGGCTGTTACCCTGACAGGTTATTACCCTGACAG------------------------------------------------------------GTTGGTACCCTGACAGGCTGTTAC---CCTGACAGGTTATTACCCTGACAGGTT-------------GGTACCCT---------------GACAGGTTATTACCCTGACAGGCTGTTACCCTGACAGGTTATTACCCTGACAGGCT s danRer1.chrNA 177035715 331 - 390413307 AGGCCCCAGGGTGCCCC---CTAGCCCTCCA------------------CCTAAGGGCCTCTGACCCCAGCTAGCTAGCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTAGAGGCCCTAGGGTATCCCCTGGCCCTCCACCTAGGGGATTTATTCCCCAGCAAGCTACCCTGGGGTCCACCTCTCCACCTGCACTTGCAGTAGAGGCCCTAGGGTGCCCGCTGGCCCTACA---CCTAGGGGCCTCTGACCCCAGCAAGCTACCCAGGGGTCCAGCTTTCCCCCTGAACTTGTAGTAGAGGCCCCAGGGTGCCCCCTGGCCCTCCACCTAGGGGCCTCTGACATCAGCAAGCT a score=-11129.0 s hg17.chr17_random 416013 113 + 2618010 -GCCTGAGGGCCGTGGGTCCT----GGCTGGCTGTTTGCTGGAGGCTTCGCCTGAGGGCCGCGGGTCCTGGCTGGCTGTTC--------------------------------GCCTGAGGGCCGCGGGTCCTGACTGGCTGTTTGCTGG s panTro1.chr19_random 2594863 145 + 57627672 -GCCTGAGGGCCGCGGGTCCT----GGCTGGCTGTTTGCTGGAGGCTTCTCCTGAGGGCCGCGGGTCCTGGCTGGCTGTTCTCCTGAGGGCCGTGGGTCCTGGCTGGCTGTTTGCCTGAGGGCCGCGGGTCCTGGCTGGCTGTTTGCTGG s mm5.chr5 147722639 94 + 149219885 -GCCTGAGGGGTGGGGGTTC-------CCAGCGGTT---------CTGTGTCTGAGGGGTGGGGGTTCC-----TCTGT----------------------------------GCCTGAGGGGTGGGGGTTCCCAGCGGTTCTGTGTCTG s rn3.chr16 28576347 85 - 90224819 -TTCTGAGATCCTGGGGTTC--------------------------------TGAGGTCCTGGGGTTCTGAGGTCCTGGGG--------------------------------TTCTGAGGTCCTGGGGTCCTGAGGTCCTGAGATCCTG s canFam1.chr14 8720821 96 + 63549963 -TCCTGGTGGCCACTGGTCAT----GGTGAACA------------TCAGCCCTGGTGGGCACTGGTCCTGGTGAGCACTGG--------------------------------TCCTGGTGAGCACTGGTCCTGG-----TGGGTGCTGG s fr1.chrUn 40786256 85 - 349519338 -CCCTGACAGGCTGTTACCCT----GACAGGTTATT----------------------------ACCCTGACAGGCTGTTA--------------------------------ACCTGACAGGTTATTACCCTGACAGGCTGTTACCCTG s danRer1.chrNA 177036046 101 - 390413307 ACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTA-----------------GAGGCCCCAGGGTGCCCCCTGGCCCTCC--------------------------------ACCTAGGGGCCTAAGACCCCAGCAAGCTACACAGGGG a score=-939.0 s hg17.chr17_random 416126 7 + 2618010 AGGCTTC-- s fr1.chrUn 40786393 5 - 349519338 --GTTAT-- s danRer1.chrNA 177036151 7 - 390413307 --ATTCTCT a score=-1155.0 s hg17.chr17_random 416126 3 + 2618010 AGG-- s panTro1.chr19_random 2595008 3 + 57627672 AGG-- s mm5.chr5 147722733 3 + 149219885 AGG-- s rn3.chr16 28576432 3 - 90224819 GGG-- s fr1.chrUn 40786393 1 - 349519338 --G-- s danRer1.chrNA 177036151 3 - 390413307 --ATT a score=-824.0 s hg17.chr17_random 416129 4 + 2618010 CTTC- s panTro1.chr19_random 2595011 4 + 57627672 CTTC- s fr1.chrUn 40786396 4 - 349519338 ATTA- s danRer1.chrNA 177036154 4 - 390413307 -CTCT a score=-860.0 s hg17.chr17_random 416129 4 + 2618010 CTTC- s fr1.chrUn 40786396 4 - 349519338 ATTA- s danRer1.chrNA 177036154 4 - 390413307 -CTCT a score=5708.0 s hg17.chr17_random 416133 97 + 2618010 TCCTG------------AGGGCCGCGGGTCCTCACTGGCTGTTCTCCTGAGGGCCACGGGTCCTGGCTGGCTG----------------TTCTC--------CTGAGGGCCGTGGGTCCTGGCTGGCTGTTTG------- s panTro1.chr19_random 2595015 109 + 57627672 TCCTG------------AGGGCCGCGGGTCCTGGCTGGCTGTTCTCCTGAGGGCCGCGGGTCCTGGCTGGCTGTTTGCTGGAGGC----TTCTC--------CTGAGGGCCACGGGTCCTGGCTGGCTGTTTG------- s rn3.chr16 28576435 97 - 90224819 TTCTG------------AGGTCCTGAGGTCCTGAGATCCTGGGGTTCTGAGGTCCTGAGATCCTGGGGTTCTG----------------AGGTC--------CTGAGATCCTGGGGTCCTGGGGTTCTGAGGT------- s canFam1.chr14 8720917 97 + 63549963 TCCTG------------GTGGGCGCTGGTGCTGGTGGGTGTTGGTCCTGGTGGCCGCTGGTCCTGGTGGCCAC----------------TGGTC--------ATGGTGAATGTCAGCCCTGGTTGAGCACTGG------- s fr1.chrUn 40786400 97 - 349519338 CCCTG------------ACAGGCTGTTACCCTGACAGGTTATTACCCTGACAGGTTATTACCCTGACAGGCTG----------------TTACC--------CTGACAGGCTGTTACCCTGACAGGCTGTTAC------- s danRer1.chrNA 177036158 137 - 390413307 CCCTGGACTTGCAGTATAGGCCCCAGGGTGCCCTCTAGCCCTCCACCTAGGGGCTTCTGACCCAAGCAAGCTA---CCCAGGGGTCCAATTATCTCCCTGGACTGGCAGTATAGGCCCCAGGGTGCCCTCTAGCCCTCCA a score=313.0 s hg17.chr17_random 416230 11 + 2618010 -CTGGAGGCTTC s fr1.chrUn 40786531 9 - 349519338 ---ACAGGTTAT s danRer1.chrNA 177036295 12 - 390413307 CCTAGGGGCTTC a score=1335.0 s hg17.chr17_random 416230 7 + 2618010 -CTGGAGG s panTro1.chr19_random 2595124 7 + 57627672 -CTGGAGG s rn3.chr16 28576532 7 - 90224819 -CCTGAGG s fr1.chrUn 40786531 5 - 349519338 ---ACAGG s danRer1.chrNA 177036295 8 - 390413307 CCTAGGGG a score=100.0 s hg17.chr17_random 416237 1 + 2618010 C s panTro1.chr19_random 2595131 1 + 57627672 C a score=290.0 s hg17.chr17_random 416237 4 + 2618010 CTTC s fr1.chrUn 40786538 4 - 349519338 ATTA s danRer1.chrNA 177036303 4 - 390413307 CTTC a score=1050.0 s hg17.chr17_random 416238 3 + 2618010 TTC s panTro1.chr19_random 2595901 3 + 57627672 TTC s fr1.chrUn 40786539 3 - 349519338 TTA s danRer1.chrNA 177036304 3 - 390413307 TTC a score=91.0 s hg17.chr17_random 416241 1 + 2618010 T s danRer1.chrNA 177036307 1 - 390413307 T a score=2808.0 s hg17.chr17_random 416241 4 + 2618010 TCCT s panTro1.chr19_random 2595904 4 + 57627672 TCCT s rn3.chr16 28576539 4 - 90224819 TTCT s canFam1.chr14 8721014 4 + 63549963 TCCT s fr1.chrUn 40786542 4 - 349519338 CCCT a score=4323.0 s hg17.chr17_random 416245 42 + 2618010 GAGGGCCGCGGGTCCTCACTG------------------GCTGTTCTCCTGA-GGGCCACG s panTro1.chr19_random 2595908 42 + 57627672 GAGGGCCGCGGGTCCTGACTG------------------GCTGTTCTCCTGA-GGGCCGCG s rn3.chr16 28576543 42 - 90224819 GAGGTCCTGGGGTCCTGAAGT------------------CCTGAGATCCTGG-GGTTCTGA s canFam1.chr14 8721018 60 + 63549963 GGTGGCCGCTGGTCCTGATGGACGTATGGAACTATCTCAGCTGTGCATGTGA-AAGTCACG s fr1.chrUn 40786546 42 - 349519338 GACAGGCTGTTACCCTGACAG------------------GCTGGTACCCTGACAGGTTAT- s danRer1.chrNA 177036634 42 - 390413307 GAGGCCCCAGGGTGCCCCCTG------------------GCCCTCTACCTAA-GGGCCTCT a score=5089.0 s hg17.chr17_random 416287 65 + 2618010 GGTCCTGGCTGGCT--------GTTCTCCT--------------------GAGGGCCGCGGGTCCTGGCTGGCTGTTCTCCTGA------------------------------------------GGGCCGCGG s panTro1.chr19_random 2595950 65 + 57627672 GGTCCTGACTGGCT--------GTTCTCCT--------------------GAGGGCCGCGGGTCCTGGCTGGCTGTTCTCCTGA------------------------------------------GGGCCGCGG s rn3.chr16 28576585 65 - 90224819 GGTCCTGGGGTCCT--------GAGGTCCT--------------------GAGGTTCTGAGGTCCTGAGGTTCTGAGGTCCTGG------------------------------------------GGTCCTGGG s fr1.chrUn 40786588 107 - 349519338 TACCCTGACAGGCT--------GTTACCCT--------------------GACAGGTTATTACCCTGACAGGCTGTTACCCTGACAGGTTATTACCCTGACAGGCTGTTACCTCAAACAGAATCTTGGGCTGAAG s danRer1.chrNA 177036676 93 - 390413307 GACCCCAGCAAGCTACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTAGAGGCCCTAGGGTACCTCCTGGCCATACACNTAG------------------------------------------GGGCCTCTG a score=1146.0 s hg17.chr17_random 416352 2 + 2618010 Gt s panTro1.chr19_random 2596015 2 + 57627672 GT s rn3.chr16 28576650 2 - 90224819 GT s fr1.chrUn 40786695 2 - 349519338 GT a score=6988.0 s hg17.chr17_random 416354 57 + 2618010 cctgg----ctgg----ctgttctcctgagggccgtgggtcctggctggctgtttgctggaggct s panTro1.chr19_random 2596017 57 + 57627672 CCTGG----CTGG----CTGTTCTCCTGAGGGCCGCGGGTCCTGGCTGGCTGTTTGCTGGAGGCT s rn3.chr16 28576652 65 - 90224819 CCTGAGGTCCTGAGGTCCTGGGGTCCTGAGGTCCTGGGGTCCTGGGGTTCTGAGGTCCTGAGGTT a score=0.0 s hg17.chr17_random 416411 4 + 2618010 tcgc a score=191.0 s hg17.chr17_random 416411 2 + 2618010 tc s panTro1.chr19_random 2596074 2 + 57627672 TC a score=200.0 s hg17.chr17_random 416413 2 + 2618010 gc s panTro1.chr19_random 2597008 2 + 57627672 gc a score=3751.0 s hg17.chr17_random 416415 18 + 2618010 ctgagggccgcgggccct s panTro1.chr19_random 2597010 18 + 57627672 ctgagggccgcgggccct s rn3.chr16 28576717 18 - 90224819 CTGAGGTCCTGGGGTCCT a score=233036.0 s hg17.chr17_random 416433 2535 + 2618010 cgctggctgtttgctggaggct-ctcctgagggtggctcacagcacagcagcaggcttcatcaacatgaaagggcggaagaggctgagactgagagtgtgtacctgtaagcaggagagagtctaggatggaagtctcagtcttttataacctaatctcagaagtgacattcatcacttttgttataatctatttgttagaagcaagtcactaggctcagcccacgcacaaggggagagaacaaaagggagtgaataccaggaggtgggatcattaggagccacttcagaagctgccgatcacGTGTactctgatcaagttaggtttattctgggaatgggttagggtggttcaataatggattatcaacaaaagcgtcacatcaataatttgtaaagacttaaatcatcatatcaatatatgttgaaaagacacataatacaacttaacagccattcctaattaga-aaaaaaaaaaactctaagtaaaatgggaacagaacgagactacttaaatgtaacaaaaaccaaccaacaaaccCCCtttcagttaaatttaggagctagacagggatgccttaattactattatttaacattgtgttggagattatagaaaatgcaacataagaaaacaaaacgaaatgtgtggtatacaattggaaaaggaaacataaaactacctcttttgtgctgatgacatgaatgtatatctggaaaacccaagagatactaataacaaactgctaaaattaatgaagaatttggttaggtggctggatacaaaatagctgtataaaaaccaatagcttaaaaacaaaacagtccaacaaacaaagaaatagctttctttcaacaaagatgccaagaacacccaatggggaaaggcagtctgttcaataaatggtgttgagaaaact-gtatccatgtatag-aagaatgagagtgaacccgtatctcacatctttaccagaatcaacacaaaatggattaaagatgtaactggaagacctgaaactatcaaactactagaagaaaatatagggaaaaggctccatgacattataagggcagtgatttattggatatgaccccaaaggctcaggcaatgaaagcaaaaacagacaaatggaattacatgaaactaaaaagcatcttcaccacaaagaaaacaattaatagagtgaagctgcaacccacagactgagaaaaaatatttgcaaattgtatattgcataaggggctacttttcaaaatatataaagaactcaaattacttaataacaaaaataaaaaccctattaaaagcaagggacttcaatagacatttctcaaaagaagacatacaaatggccaacagatacatgaaaaaatgctcaacatttctaatcattagagaaatgcaagttaaaaccacagtgagatatctcctcatacctgttagattggctatgataaacaagataaaagataagtgttggctaagatgtgaagaaaagggaaccctggtacactgttggtggtattgtaaattagtatagccattttggaaaacagtatggaggttagtaaaaaaaactaaaactagacttatttgattcagcaactctgctactaggtatacacccaaaggaattgaaatcatttgtggaagaggcatctgcgttcccatgttcattgccatgttattcacaatagccaagatatggaaacaaccgaagtgtccatcaacaggtgaacggatttttaaaatgtggtatacatacacaatggaatactatttagccttaaaaaacaggaaattctgtcacttgtaataacatgaatacatctggaggacattaagttaagtgaaataagccaggtatggagagagaaaatactgtatgatcttacttatatgtggaatttttaaaaagtcaaactcatagaagtagagagtagactggtggttaccagaggctgggtggggctgggtatgaggagaatgtggatgaggaaggggagatacttgtcaatggtgcaaagttgcagttagcaggagtgtgttctggtgttctgttgtacggcatggtggccagagttgacaatcatgtattatacatttgcaaatagtaaaagggaggattttaaatgttctcaacacaaagaaatgataaatatttgaggtgatgactatactatttagtgtgatttgatcattccacaatgtatacatgtaccaaaacattacattgaccccataaatatacactattattatttgtcaattaaaaaataaaatcacacctagcttcatcatagtcaaactgccgaaaacaaaatgtaaagagaaaattttgaaagcagccaggggacaatgatagaacaaccactaacttctcctcagagacaatggcggccagaaaacagtggaatgctatgtttaaagtgctgggagaacaaaacaaaaaactgtcaacccggtgttctgtatcaggagaaaatattattcaagaatgaaaacaaaataaaaactgcaagcaatataaaTCctacc s panTro1.chr19_random 2597028 2539 + 57627672 cactggctgtttgctggaggcttctcctgagggtggctcacagcacagcagcaggcttcatcaacatgaaagggcagaagaggctgagactgagagtgtgtacctgtaagcaggagagagtctaggatggaagtctcagtcttttataacctaatctcagaagtgacattcatcacttttgtcataatctgtttgttagaagcaagtcactaggctcagcccacgcacaaggggagggaacaaaagggagtgaataccaggaggtgggatcattaggagccacttcagaagctgccgatcacGTGTACTCtgatcaagttaggtttattctgggaatgggttggggtggttcaataatggattatcaacaaaagcgtcacatcaataatttgtaaaggcttaaatcatcatatcaatatatgttgaaaagacacgtaatacatcttaacagccattcctaattagataaaaaaaaaaactctaagtaaaatgggaacagaacgagactacttaaatgtaacaaaaaccaaccaacaaaccccctttcagttaaatttaggagctagacagggatgccttaattactattatttaacattgtgttggagattatagaaaatgcagcataagaaaacaaaaggaaatgtgtggtttacaattggaaaaggaaacataaaactacctcttttgtgctgatgacctgaatgtatatctggaaaacccaagagatactaataacaaactgctaaaattaatgaagaatttggttaggtggctggatacaaaatagctgtataaaaaccaatAGCTTAAAAAcaaaacagtccaacaaacaaagaaatagctttctttcaacaaagatgccaagaacacccgatggggaaaggcagtctgttcaataaatggtgttgagaaaacttgtatccatgtatagtaagaatgagagtgaacccgtatctcacatctttaccagaatcaacacaaaatggattaaagatgtaactggaagacctgaaactatcaaactactagaagaaaatatagggaaaaagctccatgacattataagggcagtgatttattggatatgaccccaaaggctcaggcaacaaaagcaaaaacagacaaatggaattacatgaaactaaaaagcatcttcaccacaaagaaaacaattaatagagtgaagctgcaacccacagactgagaaaaaatatttgcaaatcatatattgcataaggggctacttttcaaaatatataaagaactcaaattacttaataacaaaaataaaaaccctattaaaagcaagggacttcaatagacatttctcaaaagaagacatacaaatggccaacagatacatgaaaaaatgctcaacatttctaatcattagagaaatgcaagttaaaaccacagtgagatatctcctcatacctgttagattggctatgataaacaagataaaagataagcgttggctaagatgtgaagaaaagggaaccctggtacactgttggtggtattgtaaattagtatagccattttggaaaacagtatggaggttagtaaaaaaaactaaaactagacttatttgattcagcaactctgctactgggtatacacccaaaggaattgaaatcatttgtggaagaggcatctgcgttcccatgttcattgccatgttactcacaatagccaagatatggaaacaaccgaagtgtccatcaacaggtgaacggatttttaaaatgtggtatacatacacaatggaatactatttagccttaaaaaacaggaaattctgtcacttgcaataacatgaatacatctggaggacattaagttaagtgaaataagccaggtatggagagagaaaatactgtatgatcttacttatatgtggaatttttaaaaagtcaaactcatagaagtagagagtagactggtggttaccagaggctgggtggggctgggtatgaggagaatgtggttgaggaaggggagatacttatcaatggtgcaaagttgcagttagcaggagtgtgttctggtgttctgttgtacggcatggtggccagagttgacaatcatgtattatacatttgcaaatagtaaaagggaggattttaaatgttctcaacacaaagaaatgataaatatttgaggtgatgactatactatttagtgtgatttgatcattccacaatgtatacgtgtaccaaaacattacattgaccccataaatatacactattattatttgtcaattaaaaaataaaatcacacctagcttcatcatagtcaaactgctgaaaacaaaatgtaaagagaaaattttgaaagcagccaggggacaatgatagaacaaacactaacttctcctcagagacaatggcggccagaaaacagtggaatgccatgtttaaagtgctgggagaacaaaacaaaaaactgtcaacccggtgttctgtatcaggagaaaatattattcaagaatgaaaacaaaataaaaactgcaagcaatataaatcctacc a score=44066.0 s hg17.chr17_random 418968 420 + 2618010 aatgggagaatggttgaaaaataatagtacatccacgacatagatatgtactattaagctcccattaaaaagcatgagttaggactatgtcagttgacacagaaggggtaaaaaatagtttt--------acaaaaatag--------------------------------------------------------gatgacaaaatctaatatatttgtctatctttgtgtgtGTGTGTGTGTGTTTATATTTGagtggcacgccaagggggaaggtgggtcagtctctcccaggtgttgaccataattggataaattgta----aagtgtttaaaaacgatagtaaaaatggctagaagttggcctgctttttgtcat-------cagcatacattctaaacatgtcagtgatatgatactgtccccTACAGTGATGGAAGGCCTCTCTGTTCGCTCTCTAGGCAAGCCACTATGTATTTGTACGTGGTTTAT s panTro1.chr19_random 2599567 416 + 57627672 aatgggagaatggttgaaaaataatagtacatccacgacatagatatgtactattaagctcccattaaaaagcatgAGTTAGGACTATGTCAGTTGACACAGAAGGGGTAAAAAATAGTTTT--------ACAAAAATAG--------------------------------------------------------GATGACAAAATCTAATATATTTGTCTATCTTTGTGTGTGTGTGTGT----TTACATTTGagtggcacgccaagggggaaagtgggtcagtctctcccaggtgttgaccataattggataaattgta----aagagtttaaaaacgatagtaaaaatggctagaagttggcctgctttttgtcat-------cagcatacattctaaacatgtcactgatatgacactgtctcctacaGTGATGGAAGGCCTCTCTGTTCGCTCTCTAGGCAAGCCACTATGTATTTGTACGTGGTTTAT s mm5.chr11 121425297 394 + 121648857 AGTGAGTAAATGCTTGAAAA--AGTAGCCTATC-------------TGTAATAATAACATTGGCTTAAAAA-CATGAATTAAAACCATGTCATTTGACAGAAATAGAATGAGAAACAATTTTTAGGAGAGACAGGAGAAGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGAGGAGAGGAGGGGAGGGGAGGGGAGAGAACACTAT-TGATATATTTGTCTCCATTTGTAT--------------CTAC-----AATAGTTTGCTAAGGAGGGAGAGGGTCCAGACTGCTTCAGATGTAGAACATAGTTGGGCACATTGTCTGCTGTGAATCTAAAAACAAT-----GAGTGTCTAGAAGTTGGTCTGCTTTCCATTGTTCCTGTGCACCATCAATTCTCAACA-------------ATAC-------------------------CTCTGCTTAATTTGT-----AGCCGCTGTGT----------------- a score=15772.0 s hg17.chr17_random 419388 243 + 2618010 ATAAACATGAAGACGAGCATGGAAGGGCATACAATTGGTTGTTAGCCCAGGTGACCTGGAAGGGGTTGGGGTTGGCATGGTGGAGGGAAAGTTGGATCGGGAAGCAAAAATGGAAGAGGAAGCAAAATGGAC-GTCAC-TAAAATCCTGAACAGTATCATGATATAATGATG----------TATACACAGT-TCCCGAAGC----TTACAT------ACATGTGCATATA------------------------------AAGGGAAATTTTAAAAAGAAAATTAAAAGAAAAAG s panTro1.chr19_random 2599983 243 + 57627672 ATACACATGAAGATGAGCATGGAAGGGCATACAATTGGTTGTTAGCCCAGGTGACCTGGAAGGGGTTGGGGTTGGCATGGTGGAGGGAAAGTTGGATCGGGAAGCAAAAATGGAAGAGGAAGCAAAATGGAC-GTCAC-TAAAATCCTGAACAGTATCATGATATAATGATG----------TATACACAGT-TCCCGAAGC----TTACAT------ACATGTGCATATA------------------------------AAGGGAAATTTTAAAAAGAAAATTAAAAGAAAAAG s mm5.chr11 121425691 200 + 121648857 ----------------------------------------------------------TAAGGGAT--GAGGTGGCACAGAGAAAAGGAA-CTGGGTCTGAAAGCAACA---GAAGAGAAGACAAAACAAACTGTAACAGAGAACCCTCAGCAATGTCAC-ACATAGTAACATGAGCAATGTTACACATAGT-AACATGAGCAATGTCACACATAGTAACATGAGCACATA----------------------------GTAAAAGAAGTTTACAGAGGGGACTTTAAAGGAGA-- s danRer1.chrNA 120184253 253 - 390413307 ATAACCAAGAAAACCACCAC-------------ATTTGGCGTCCCTCTGGGTGGGCTGGAAAGGAGCAGGACTGG--TGTTACTGTGCATGCTGGACTGGAGAGAAAACACAAATATGTGGCCACAATAA---------AAAAACGGTAAGCGATTTTAT-GCTTATTAGTT----------TGTGTTTTTTCTGCCAGGAC----CTGCTTGT----ACAGGTAAATACACTTGAACTGTTTCTCCAGCTTTAAAGAATTAAAAGTAAATGTAAAAAAGATATTAAAGAAAAAAG a score=15976.0 s hg17.chr17_random 419631 261 + 2618010 CCCCAGATTCCCTTCTCAGAAAACCACAATTTCCCATTGAATTCTGATGGG--------TTAGATACCCCTAA-----------AGGTCACGTGTGGCTCCACCCCGGAG--------------------------------TTGAGCATATCTGCTGTAGACCTTGGATTTGTCTGG-----TCTACAATGTGATGT---CTTCT---AAtctgaggaacagttttccc--atct----gcataagggcacctgcctcacagagcagctttgggtctcgtaaacggacggcacatgtgaGTTTACTGCCAGgcagtcctcagtctgtg s panTro1.chr19_random 2600226 233 + 57627672 CCCCAGATTCCCTTCTCAGAAAAACACAATTTCCCATTGAATTCTGACGGG--------TTAGATACCCCTAA-----------AGGTCACGTGTGGCTCCACCCCGGAG--------------------------------TTGAGCATATCTGCTGTAGACCTTGGATTCGTCTGG-----TCTACAATGTGATGT---CTTCTCCTAATC-------------------------------------ACCTGCCTCACAGAGCAGCTTTGGGTCTCGTAAACGGACGGCACATGTGAGTTTACTGCCAGgcagtcctcagtctgtg s mm5.chr11 121425891 310 + 121648857 ----AGATTTTCCT-------------GGTTTTATATTGACTTC--ATGGGGCTAGGCCTTGAATGTCCTTAACCCCCACCCTGAGATCAGAAACAACTGCAGCCTAGGGATACTCTGGTTATGACTCAACTCTTTTGCTCCTTGCACTGATCAATTGGGATACCTGGATTGCTCAAGACTTTTCTGGAATCTGGTTTTTGCTCCTCCTTATCTGTGACATTGGTAGGCTTAATCTGAAGGTATTTCACTACATGTCTACCTTAGCTCCCTTTTAGTTGATGAGCAGAACTTTTGTGAAAATTTCCCACCAAGGGGCTCTTGATCTGTG a score=1919.0 s hg17.chr17_random 419892 20 + 2618010 cacgtcacagtccactttgg s panTro1.chr19_random 2600459 20 + 57627672 cacgtcacagtccactttgg a score=29546.0 s hg17.chr17_random 419912 283 + 2618010 a-actcctaagaatgctgtctcctcccaccctagacgtcctcacacagaatctgtgaggggctggcctaggcagaattatcttttaaaaactttgca-----tatgaGGT---GCTTGATAAAAGCTAGTTGGATTTGAATTTGGCCACAGCTCAGATAATCTGGGGAACTGGGGTGTCTGCTAAGGATATGTGACCATCTGCTGGTGTAAACCTTTCAGATGATGGGGAAGCCGGGCATCACGGA--------GAGCTGAGAAGACTCGCTTGTTCACACTTACTCGAAAGCAGGTGCG s panTro1.chr19_random 2600479 284 + 57627672 agactcctaagaatgctgtctcctcccaccctagacgtcctcacacagaatctgtgaggggctggcctaggcagaattatcttttaaaAACTTTGCA-----TATGAGGT---GCTTGATAAAAGCTAGTTGGATTTGAATTTGGCCACAGCTCAGATAATCTGGGGAACTGGGGTGTCTGCTAAGGATATGTGACCATCTGCTGGTGTAAACCCTTCAGATGATGGGGAAGCCGGGCATCACTGA--------GAGCTGAGAAGACTCGCTTGTTCACGCTTACTCGAAAGCAGGTGCG s mm5.chr11 121426670 271 + 121648857 -GGGTTCTAAGAATGACATCTCTCCACGC--------TCATCA-GCAAGATCTGCAAAGCATGGACT--GGCAGAA-TGCAATTTGAAAACTTCACAGAACCCATAACTTTTCACTTATGAAAAGT--ATTGGGTTTAAATTTGGCTACAGTTT-GATAATTCCAGCA--CTGAGTGTCTGTTAAGAAC---CAACAAACTACAAGCGCAATGCC-TCAGAGG--GGGGAAAAAAGGCCTCTGTGGTTGGTTCTGTTCCGACAAGACTC-CTGCAGCACTCCT----GGAAGCACTGGTG a score=-456.0 s hg17.chr17_random 420195 6 + 2618010 CCTCC-----C s panTro1.chr19_random 2600763 6 + 57627672 CCTCC-----C s mm5.chr11 121426941 11 + 121648857 ACACCCGTGGC s rn3.chrUn 69964440 6 - 75822765 CTTCG-----C a score=40351.0 s hg17.chr17_random 420201 241 + 2618010 AATTTCTCTGTGTTTTTAGAAATCTCTCATTCTTTCTTCAGTCTCCCTTTCCCCACCCTGCCTATTTTCTCTCTTTCTCTCTCCACTTAATCTTTTCTTTTTTCCTTTTCCTTATTCCTCATC-TTAACAGGTCCTAAGTGTGTGTTG-TATGTATTTAAAAAGTTTTCGTCTCTGTTTTTAATT-------------------------AAAAGAAGAAGAGCTTACTCCTGTTTCCAAACCCCTGCACGTGATACTCAAGGAGCTG s panTro1.chr19_random 2600769 241 + 57627672 AATTTCTCTGTGTTTTCAGAAATCTCTCATTCTTTCTTCAGTCTCCCTTTCCCCACCCTGCCTATTTTCTCTCTTTCTCTCTCCACTTAATCTTTTCTTTTTTCCTTTTCCTTATTCCTCATC-GTAACAGGTCCTAAGTGTGTGTTG-TATGTATTTAAAAAGTTTTCGTCTCTGTTTTTAATT-------------------------AAAAGAAGAAGAGCTTCCTCCTGTTTCCAAACCCCTGCACGTGATACTCAAGGAGCTG s mm5.chr11 121426952 213 + 121648857 AAATCGTCTCTGCTCTT-GATGTCTCTCTGTTGTT-----ATCACCCTTCCTGGCCCCTGGTCATT-----TCTTTCTACC-------------TTTGTTTTTCCTTTTCATTAACCCTCACCTGTAACTGCTCCTATATGCATGCTA-TATATATTTAGAAAGTTTTTCCCCCTGTTTTTAATT----------------------------TTTAAAAAAGTTTAATTCTACTTCTAAGCCTCT-CGTGTGACACTC-AGGATCAT s rn3.chrUn 69964446 214 - 75822765 AAATCATCTCTGCTCTT-GATGTCTGTCTGCTGTG-----GTTGCCCTTCCTGGCCCCTGGTCATTT----CCTTTTCACC-------------TTTGTTTTTTCTTTTCATTAACTCTCATCTGTAACTGCTCCTATATGTGTGTTATTATATATTTAGAAAGTATTT-TTTCTGTTTTTATTT----------------------------TTTTTTAACGTTTAATTCTACTTCTATGCCT-TGCACAGGACACTC-GGGATCAT s danRer1.chrNA 160642220 251 - 390413307 AATTTGTATGTGCCCTTTCTTATTTATTTATTGTT------TCTTATTTTTTTCTCATTGTCTTTCTTCTGCTTTATTATATTTCTTAAAAACTGCCATATTTCTTTAAATTTGCCACGTTGTTGCAAAAAAGTA-ATATTTGTATTG-TATGTACT------ATACTTCTATCTGTTTGTATTTTTATGTTGTAATTGCCTGTAGTTATTAAAATAAAAAGGTATAATAATAATTCAAAAT---TACACATTCTGACTGAGGAAATG a score=6048.0 s hg17.chr17_random 420442 65 + 2618010 GTGATGGTGCTTGCTGGGCTTATGAAGTGCAGCTGTGTCCTCTCTTGCTCTGTAACACCCTCTCT s panTro1.chr19_random 2601010 65 + 57627672 GTGATGGTGCTTGCTGGGCTTATGAAGTGCAGCTGTGTCCTCTCTTGCTCTGTAACACCCTCTCT s mm5.chr11 121427165 39 + 121648857 GTGAC----CTCTCTA-----------------TGTGCCCTTGCTTGCTGTGCATCA-----TAA s rn3.chrUn 69964660 37 - 75822765 GTGAC----CTCTCTA-----------------AGTGCTCTTACTTGCTTTGCATCTC------- a score=4217.0 s hg17.chr17_random 420507 76 + 2618010 GCCAGAAACAGCTCAGCAGGAAGGCAGCGGGGCACCTTGGAAACGTGCCCCTGGGCCCCACCTTACAGCCTCTGCT------ s panTro1.chr19_random 2601075 76 + 57627672 GCCAGAAACAGCTCAGCAGGAAGGCAGCGGGGCACCCTGGAAACGTGCCCCTGGGCCCCACCTTACAGCCTCTGCT------ s mm5.chr11 121427204 62 + 121648857 GTGCGGAACTGGTGCCCTGGAAAGCCAAGGAACGTCTCTAGGACATTTC--------------TGCTGCCCTTGCT------ s rn3.chrUn 69964697 64 - 75822765 ------AAGTGCTGAGCTGG--TGCCCTGGAAAGTCAAGGAA---TGTCTCTAGGACACTCC-TGTTGCCCTTGCG------ s danRer1.chrNA 281770613 68 + 390413307 GTCAGAGGCACCTTAGGTGGAGGGCCAGGGGGCACCCTGGGG-----CCTCTAG---------TGCAAGTCCAGGGATAGTT a score=592.0 s hg17.chr17_random 420583 3 + 2618010 CCG s panTro1.chr19_random 2601151 3 + 57627672 CCG s mm5.chr11 121427268 3 + 121648857 CTG s danRer1.chrNA 281770681 3 + 390413307 GTG a score=-451.0 s hg17.chr17_random 420583 4 + 2618010 CCGC-- s danRer1.chrNA 281770681 4 + 390413307 --GTGG a score=300.0 s hg17.chr17_random 420586 1 + 2618010 C s panTro1.chr19_random 2601280 1 + 57627672 C s mm5.chr11 121427274 1 + 121648857 C a score=20108.0 s hg17.chr17_random 420587 127 + 2618010 TCC-CTTCGCGGCAGAGTGGTTCAGGAACAGTCTGCAGCCTCCTGCCAGGAGGCCAGGAAAAGCCA-CTCCTGGCCCTGGGCAGC---TATGAGGCTCTTGGTGGATCTC---AGAACTCTGT-GGGGGCCAG----AGG s panTro1.chr19_random 2601281 126 + 57627672 TCC-CTTCGCAGCAGAGTGGTTCAGGATCAGTCTGCATCCTCCTGCCAGGAGGCCAGGAAAAGCCA-CTCCTGGCCCTGGGCAGC---TGTGAGGCTCTTGGTGGATCTC---AGAACTCTGT--GGGGCCAG----AGG s mm5.chr11 121427275 116 + 121648857 TCTACTTTGTGGCAGAGCAGCTCCAGAATATTTGATAT---------------CCAGGAGTAGCTACCTCCTGGCCCTGGGTGGC---TCTATGGCTTT--GTGGACCTC---ATGGCTCTGT-GGGTGATGAATGCAGG s rn3.chrUn 69964771 123 - 75822765 TCA-CTTTGTGGCAGAGCAGCTCCAAAATATTTGATAA-------CCAAGGTTCTGGAGGTAGCCA-CTCCTGACCCTGGGTGAC---TCTATGGCTCT--TTGGACCTC---ACAGCTCTGTCGGGGGTTGGAAGCAGA s danRer1.chrNA 281770685 122 + 390413307 ---ACCCCTTGGTAGA----TTCCTAG--GGTCTGAGGACCCTAGGTGGAGGGCCAAGGG--GGCA-CCCTGGGGCCTCTACATCAAGTCTAGGGAGAGTTGTGGACCCCTGGGTAGCTTGCT--GGGGTCAG----AGG a score=21369.0 s hg17.chr17_random 420714 75 + 2618010 GCTGAGTGAGTCAGGCTGTGGAGGGCAGGCACCATCCACACTCCCAGACACTTTGGGTTATAGTCTCTCTCTTCC s panTro1.chr19_random 2601407 75 + 57627672 GCTGAGTGAGTCAGGCTGTGGAGGGCAGGCACCATCCACACGTCCAGACACTTTGTGATATAGTCTCTCTCTTCC s mm5.chr11 121427391 73 + 121648857 ACTGGGTGAGTCAAGCCAAAGAGG--CAGTAGTTTCCACACCCTGATGCATTTTGAATTTCAGTTTCTTCCCTCC s rn3.chrUn 69964894 73 - 75822765 GCTGGGTGAGTCAAGCCAGGGAGG--CAGGAGCGTCCACACCCTGATGTGTTTTGAATTTCAGTTTCTTCCCTCC a score=302.0 s hg17.chr17_random 420789 2 + 2618010 TT s panTro1.chr19_random 2601482 2 + 57627672 TT s rn3.chrUn 69964967 2 - 75822765 TC a score=6607.0 s hg17.chr17_random 420789 125 + 2618010 TTGATTAGAAGAGGCCTGGGAACTTCAGCTGGCGACTCTGGTGTTTCTGACTTTGGCTATCAGCAAAC--------ACTGCTGGAGGC--TCTGCCCCGTCCACACCCAGCTTCTGTGAGCACGGAGGAGGCATA----- s mm5.chr11 121427464 97 + 121648857 ----TCAGAGGGGGCCTGGGAATCTCAGCAGATGACT----GGTTTCAGACTTTGGCTGTCAGCAAACTGTGGCCTACTG-TGGAGGCCATATGCCTCATGCCTGC---------------------------------- s rn3.chrUn 69964967 101 - 75822765 ----TCAGAGGGGGCCTGGGAATCCCAGCAGATGACT----GTTTTCTGACTTTGGCTGTCAGCAAGC--------AGTGTGAGAGTT--GCTGTGGAGGCCATAT---------------------GAGTCATGCCTGA a score=44884.0 s hg17.chr17_random 420914 246 + 2618010 ATCTGCAAAGTCTGACACAGGCCATGCCTAACCATCCTTGACTGGCTACCTCCAGTGACATAAAACTGAGAAGCAAAGACACNCAGGAGGCAAGGCTGCAGTCATTTAGGAGAGTGGACGGATGCCAGGGCTGTGCTGCCTG-----CAGCCTTTGTGGGGCTCAGTGACCAGAGGAGCAGCCCATGCCAAGCCTAGTCCCCAGGGATGCTGCCTGCGGTGCTCACGCATCTTATACAGGGACACAGAGGA s panTro1.chr19_random 2601696 245 + 57627672 ATCTGCAA-GTCTGACACAGGCCATGCCTAACCATCCTTGACTGGCTACCTCCAGTGACATAAAGCTGAGAAGCAAAGACACCCAGGAGGCAAGGCTGCAGTCATTTAGGAGAGTGGACGGATGCCAGGGCTGTGCTGCCTG-----CAGCCTTTGTGGGGCTCAGTGACCAGAGGAGCAGCCCATGCCAAGCCTAGTCCCCAGGGATGCTGCCTGCGGTGCTCACACATCTTATACAGGGACACAGAGGA s mm5.chr11 121427561 220 + 121648857 ATTTTTACAGTGTG-----------GCCTTGTAACTCGTGATTAGATTCC-ATGGCAATATGGACCTCAGATGCACAAGGTGGCAGAAGG--AAGTTGTGGCT------GGTGCTGAACTAATGTGGGGACCAGCCTTTGTGAACATCAGCCTTTCTTCAGCTTGGGGGTTAGGAAGGT--------CCATGCCCAACACCCAGTGAGTCTGCCTATAGCACCTATGAGCTTCATACTG---TACACAGGA s rn3.chrUn 69965068 220 - 75822765 ATTTTTACAGTGTG-----------GCCTGGTAACTCTTGATTAGATACC---------ATGGACCTCAGATGCACAAGGCAGCAGAAGG--AAGTCATGGCT------GGTGCTGGACTAATGTGGGGACCAGCCTTTGTGAACAGCAGCCTTTCTTCAGCTTGGGGACTAGGAAGGCAGTCCATGCCATGCCCAACACCCAGGGAGTCTGCCTATAGCACCTATGAGCTCCATACGA---TACTCAGAA a score=5524.0 s hg17.chr17_random 421160 16 + 2618010 ACTCTGGGCTCCACCC-------- s panTro1.chr19_random 2601941 16 + 57627672 ACTCTGGGCTCCACCC-------- s mm5.chr11 121427781 16 + 121648857 ACTCTGGGTACTATCC-------- s rn3.chrUn 69965288 16 - 75822765 ACTCTAGGTACCATCC-------- s danRer1.chrNA 142861433 24 - 390413307 tCCCCGGGCTCCTCACGTTCTGCC a score=394.0 s hg17.chr17_random 421176 7 + 2618010 ----------TGCAGCC s panTro1.chr19_random 2601957 7 + 57627672 ----------TGCAGCC s mm5.chr11 121427800 7 + 121648857 ----------TACAGCC s danRer1.chrNA 142861457 16 - 390413307 TGCTGCGTCTTACACC- a score=13322.0 s hg17.chr17_random 421183 115 + 2618010 TCTGCTCCAGCACGCGGTGGTCCCAG--------GAGATGTAGAACCAGCCCTTCCTCTGCAGTTGCACTGGGTAAGTGATGCTGTGGGCTGTTATCCATCAGAAATACACCGCCCACTGCTC s panTro1.chr19_random 2601964 115 + 57627672 TCTGGTCCAGCACGCGGTGGTCCCAG--------GAGATGTAGAACCAGCCCTTCCTCTGCAGTTGCACTGGGTAAGTGATGCTGTGGGCTGTTATCCATCAGAAATACACCGCCCACTGCTC s danRer1.chrNA 142861473 119 - 390413307 TTTGACTGAGCACCGGAAAAAGTCAACTTTGTGTGGAAAATGCAACCAGCA--TCCTTTGTTTTAGCACCAAG--ACTGTTGCAGTGGTTACTTATCAACAAAAAAAGCACAGCACACTGCTC a score=1280.0 s hg17.chr17_random 421298 23 + 2618010 CACCAGTCAAAGTTACGCCTACT s panTro1.chr19_random 2602079 20 + 57627672 CAT---TCAAAGTTACGCCTACT a score=26305.0 s hg17.chr17_random 421321 255 + 2618010 CTGGAATTTGCTCTCT-TAGCCATTTGCTTGGTTTAGGAAAAGCCTAAGCTTCTGCCCCCCCGATTCACCACAGAAGCCCTCTATTATCACTCCTGTTACGTGTAAAGGCTGAGTTATTGCTAACTCTCAACAGGTCCTAGAATCCTTTATGTGCATTCGGGGGACTGGGGGAGGCCCTGGACACTGTGCCAGGTGCTGTGTCTCAAGGTTCACTGGACCTGACAGGGAGA--------------TTGGGAACAAAGGCCCTGAGAGATG s panTro1.chr19_random 2602099 255 + 57627672 CTGGAATTTGCTCTCT-TAGCCATTTGCTTGGTTTAGGAAAAGCCTAAGCTTCTGCCTCCCTGATTCACCACAGAAGCCCTCTATTATCACTCCTGTTATGTGTGAAGGCTGAGTTATCGCTAACTCTCAACAGGTCCTAGAATCCTTTATGTGCATTCGGGGGACTGGGGGAGGCCCTGGACACTGTGCCAGGTGCTGTGTCTCAAGGTTCACTGGACCTGACAGGGAGA--------------TTGGGAACAAAGGCCCTGAGAGATG s fr1.chrUn 302494665 215 + 349519338 CTGTGGTTTGCTTTCTGCCACCATGCTCTCAGTCTAA--------------TCTGCTTCCCCTCTTCACCCTTTCATCCCTCTTTCCTTCTTCCGGCT-----------------------------TCGGCGCGT--TTGATGCCCTCAGGTGAAGCTAGGGGGC-------AGCACTGAGCCGCGTGGCAGGTGCTGTTTTTTTAGGGGCGTCAG---TGACCCAGAAATCCCTGCTCCATTGTTGGGAATGAAGCTGATGAGGGCTG a score=873.0 s hg17.chr17_random 421576 9 + 2618010 TGGGGAGCA s panTro1.chr19_random 2602354 9 + 57627672 TGGGGAGCA a score=27934.0 s hg17.chr17_random 421585 274 + 2618010 GCCTTTGTGTCTGAGCTGTCACTCAGCTCTTTGCTTTATGCCACTGGCGTACCTGCTGGAGGAACTCCATGTGGAGGAAGGCTGGGCCCTGTGGGGGGCATTCGAGGGGGACACTCTGGCCAGCCTCAGGCTGGGTCCACCTAGG----GGGAGGAGGGGACAAGCCACCTCATGGATGTTGTACACAGTGGCCCAA---AAGT-GACCTTAAAAATGGATTTAAGGAATAAATCCAAATCCAAATATAAGACATAAGCCATCTGAAGAAACAGCCTTGGTG s panTro1.chr19_random 2602363 274 + 57627672 GCCTTTGTGTCTGAGCTGTCACTCAGCTCTTTGCTTTATGCCACTGGCGTACCTGCTGGAGGAACTCCATGTGGAGCAAGGCTGGGCCCTGTGGGGGGCATTCGAGGGGGACACTCTGGCCGGCCTCAGGCTGGGTCCACCTAGG----GGGAGGAGGGGACAAGCCACCTCATGAATGTTGTACACAGTGGCCCAA---AAGT-GACCTTAAAAATGGATTTAAGGAATAAATCCAAATCCAAATATAAGACATAAGCCATCCGAAGAAACAGCCTTGGTG s danRer1.chrNA 305232068 263 - 390413307 GCCTGTGCGGCTGGGACGGCCTCCAACGCTGGACGCCACAGAGCTGACAGAGCTGATGGAGGAAC------TGGAGGGGCTGTGGGCCAGAGACGACACACCC-ATCGCCATACGCTTGCTCTTCTTAGCTTTAGCTGGACTGGTGGACGGGAAGCCGATGCGAATCACCTTGTGGAT-TGGAGCAAAGAGGCCAAACTTGGGTGGGCACTGGAAAT--ATCTAAGG-GTACACACAGA---AAATAAAGGAAGCAAG-----GAAGGAAATAGCTTAAATG a score=232278.0 s hg17.chr17_random 421859 2518 + 2618010 ATTGTCTTTGAACCTCCAGACTGTGGGGTGACTTGCCTCATACAGGCTGATATGGAAGTGCTTATCTCAGTAACTTCACTGTGCTCTGTCTGAAGAGAAGATGTTTCGCGGCTGAGTGGCCCGCATTGCATCTTATAAAAGCGGAGCCCAGGGAGACCGAATCTGGCTCGTGTCTCTAGCATTGCTTGAGAGTGGGGACATTTTGGCCCCAGACACAGGATTCTGACCTGTGTGGGAGGCACGTCCCTGTGTTGGAGGTGGGTGCCCCCAGCTTCTACATATTAATGATGTCCCTGTTAGGGTTACTTTGCCCATCCCCTTGGCACTGATTCTGTTAATTTTCTGATTGTAACTTAAGGAttgtggttttggtgtggcatctaagatttcttgtctaatataaggtcacaaaga-ttttttttcctgtatttncttttaaaagttgtggagatttagctattatgtttcagtctgtattagtccattttcacactgctgatatagacatacctgagactgggtaatttataaagagaaagaagtttaatggactcagttctatttggctggggcagcctcacaatcatggtggaaggcaaaaggcacgtcttacatggcagcagacaagagagagctcgttcagggaactcccatgtatcagatcttgtgagacttattcaccgtcgtaagaacagcatgggaaagactcaccctcatgattcagtcaccttccaccaggtccctcccatgacaggttggaactatgggagctacaatttgagatttgggtggggacatgcccaaaccacatcaaggtctatgataccttttgagttattttgtgtgtatggtgtgaggaaaggttctatatccacctttcttgcatctggacatccagttttcccagcattatttgttaaaagactatcattttccccattgaactgccttggtacctttgttgaaaatcagtttactgtaaatgtaaggatttatttctgggctctcagttctgttccattaatctataagtccattcttaataccgtttccacactgtcttgattactgtggctttgtagtaagggttgaaattaggaaatgtaagtcttacaactttgtttttctattccaaattgttttggtattctggatcctttgcagtttcatataaattttaggactgtcttgttattttctgcaaaaagagcctgctgggatttcagcatggatcatattgagtttgcagactgatgtggggagaatagctatttaacaacattgaatccatggacattggctgtctctccatttattcagatcttctttaaagtctctcagcaagttttgtacttgctttgttaaatttaacttaccttttttcacattttgatgctactatgaatagaattattttcttaattttcctactcatggctattatagagctacaattgatggcatgtagaaatatagttgatttttgaaattgtgtatcctgtcatctggctaaacttgtttcttagtttcagttgtacttttggtggatttcttagaattttgtgcaaaaagataactgcaaagagctttacttctctttttagcaatacagatgccttcattttattggttaccttgctgcattggctagaacctcaagtacaatgttgaatagaggtgatgagggtgggcatactgtcctcattcttgatcttagaggaaaacattttaatcaatctttcaccattaggtattatgttagctataggttttacccagatgccctttgtcaaattgaggaattttcttttccatttgtagtttgtggagatattttattatgaaagagtgttggatattttcaaatgctttttctgagtctattgagataatcatgtggtttttgttctttattctgtggttactgtattccattag-ttaagtattggatgttaaaccaatgtttggatataaatcctcctttgttaatattttgttaaggatttttgtatctatattcatgacagatatggggctgtgctttgcttttcttgtgatgtctttggctaggatgtaaggacaatactgatctcatcaggtgaattgacaggtatttctttcctcctctgttttcttgaacagtttgtaaaggattggtattatttcttttgttaatatttgctagaattcaccaatgaagccatctggcttttccttataggatgattttaattattcaatgtctttactatttataagtctattcacatactctgtcttcttgagtcagatttggtaatttgtgtatttcttcgaatttgtccatctcatgtaagatgtctaatttactggcataaagttgttaatattattgttttataacccttttaacatgtgcaggatccatagtgattctcccttcttggttttagtctctcctggttttagtcacttgtgccccatctttttACCCCACTGTAAAAGGACGGGAGGGGTAAACAGATTTTTATTTCACATC s panTro1.chr19_random 2602637 2520 + 57627672 ATTGTCTTTGAACCTTCAGACTGTGGGGTGACTTGCCTCATACAGGCTGAAATGGAAGTGCTTATCTCAGTAACTTCACTGTGCTCTGTCTGAAGAGAAGATGTTTCGTGGCTGAGTGGCCTGCATTGCATCTTATAAAAGCGGAGCCCAGGGAGACCGAATCTGGCTCGTGTCTCTAGCATTGCTTGGGAGTGGGGACATTTTGGCCCCAGACACAGGATTCTGACCTGTGTGGGAGGCACGTCCCTGTGTTGGAGGTGGGTGCCCCCAGCTTCTACATATTAATGATGTCCCTGTTAGGGTTACTTTGCCCATCCCCTTGGCACTGATTCTGTTAATTTTCTGATTGTAACTTAAGGAttgtggttttggtgtggcatctaagatttcttgtctaacataaggtcacaaagatttttttttcctatattttcttttaaaagttgtggagatttagctattatgtttcagtctgtattagtccattttcacactgctgatatagacatacctgagactgggtaatttataaagagaaagaagtttaatggactcagttctatttggctggggcagtctcacaatcatggcggaaggcaaaaggcacgtcttacatggcagcagacaagagagagctcgttcagggaactcccatgtatcagatcttgtgagacttattcactatcgtaagaacagcatgggaaagactcaccctcatgattcagtcacctcccaccaggtccctcccatgacaggttggaactatgggagctacaatttgagatttgggtggggacacgcccaaaccacatcaaggtctatgataccttttgagttattttgtgtgtatggtgtgaggaaaggttctatatccacctttctcacatctggacatccagttttcccagcattatttgttaaaagactatcattttccccattgaactgccttggtacttttgttgaaaatcagtttactgtaaatgtaaggatttatttctgggctctcagttctgttccattaatctataagtccattcttaataccgtttccacactgtcttgattactgtggctttgtagtaagggttgaaattaggaaatgtaagtcttacaactttgtttttctattccaaattattttggtattctggatcctttgcagtttcatataaattttaggactgtcttgttattttctgcaaaaagagcctgctgggatttcagcacggatcatattgagtttgcagactgatgtggggagaatagctatttaacaacattgaatccatggacattggctgtctctccatttattcagatcttctttaaagtctctcagcaagttttgtacttgctttgttaaatttaacttatcttttttcacattttgatgctactgtgaatagaattattttcttaattttcctactcattgctattatagagctacaagtgatggcatgtagaaatatagttgatttttgaaattgtgtatcctgtgatctggctaaacttgtttcttagtttcagttgtacttttggtggatttcttagaattttgtgcaaaaagataactgcaaagagctttacttctctttttagcaatacagatgccttcattttattggttaccttgctgcattggctagaacctcaagtacaacgttgaatagaggtgatgagggtgggcatactgtcctcactcttgatcttagaggaaaacattttaatcaatctttcaccattaggtattatgttagctataggttttacccagatgccctttgtcaaattgaggaattttcttttccatttgtagtttgtggagatattttattatgaaagagtgttggatattttcaaatgctttttctgagtctattgagataatcatgtggtttttgttctttattctgtggttagtgtattccattagattaagtattggatgttaaaccaatgtttggatataaatcctcctttgttaatattttgttaaggatttttgtatctatattcatgacagatatggggctgtgcttttcttttcttgtgatgtctttggctaggatgtaaggacaatactgatctcatcagatgaattgacaggtatttctttcctcctctgttttcttgaacagtttgtaaaggattggtattatttcttttgttaatatttgctagaattcaccaatgaagccatctggcttttccttataggatgattttaattattcaatgtctttactatttataagtctattcacatactctgtcttcttgagtcagatttggtaatttgtgtatttcttcgaatttgtccatctcatctaagatgtctaatttactggcataaagttgttaatattattgttttataacccttttaacatgtgcaggatccatagtgattctcccttctTGGTTTTAGTCTCTCCTGGTTTTAGTCACTTGTGCCCCATCTTTTTACCCCACTGTAAAAGGACGGGAGGGGTAAACAGATTTTTATTTCACATC a score=22354.0 s hg17.chr17_random 424377 246 + 2618010 CCAGCCCTCGCCCTGGGCCCTGTTGTTTGACCCCCAGCATCCCCTGTGGTTGCTCA----------TCTGACT----CAGGCTTCCCAGTCACACGTGATGAcatggtgacccccgcagcacagtggctagcactagaaaggggctcagtaaatgttagc-tTCTTGTCT------------------GTGTTCGCCTTCCTT----------GACTCTGGGTCTA---------CCAGGAGTTTGGCAAACTCCCCCCGTGGTCTGGACAGGAAAGCCCCAAGCATCTCTCTGGACT s panTro1.chr19_random 2605157 246 + 57627672 CCAGCCCTCACCCTGGGCCCTGTTGTTTGACCCCCAGCATCCCCTGTGGTTGCTCA----------TCTGACC----CAGGCTTCCCAGTCACATGTGATGACATGGTGACCCCCGCagcacagtggctagcactagaaaggggctcagtaaatg-tAGCTTTCTCGTCT------------------GTGTTCGCCTTCCTT----------GACTCTGGATCTA---------CCAGGAGTTTGGCAAACTCCCCCCGTGGTCTGGACAGGAAAGCCCCAAGCACCTCTCTGGACT s danRer1.chrNA 223953396 235 + 390413307 CCACCTCTCTCCCTGGA-CTTGCAGTATAGGCCCCAGGGTGCCCCTTGGACTTCCACCTAGGGGCCTCTGACCCCAGCAAGCTACCC----------------------------------------------------AGGAGTCCACT------TGTCTCCCTTGACTTGCAGTAGAGAGCTCAGGGTGCTCCCTCTCCCTCCACCTAGGGGCCTCTGACCCCAGCAAGCCACCCAGGGGT----CAATCTCTCTCTCTGGACTTGAAGTAGAAGCCCCAGGGTGCTCCCTGGCCT a score=15302.0 s hg17.chr17_random 424623 160 + 2618010 GGGGTGTGGTCGTGTCACAGAGGCATCCTCCCCACCACATACAGACAAATGCTCAGCAGTGCTGACGTCCAGATGCTTCAACACAGGGCTGCCCTCCACCCTGCTTCCTGCACAGAATGAGGATTGGAGGGGGCTGCGGCTGGAGTGTGGGTGACGGGAT s panTro1.chr19_random 2605403 160 + 57627672 GGGGTGTGGTCGTGTCACAGAGGCATCCTCCCCACCACATACAGACAAACGCTCAGCAGTGCTGACGTCCAGATGCTTCAACACAGGGCTGCCCTCCACCCTGCTTCCTGCACAGAATGAGGATTGGAGGGGGCTGCGGCTGGAGTGTGGGTGACGGGAT a score=19863.0 s hg17.chr17_random 424783 192 + 2618010 GGTCACTGTTGGGGGCACGAGCCGGGAGTTGGTGCCAGG-------TGAGGGTGCAGGAGGGGCCTGGGTCAGGAGCCCGGGTACGGGCCAGGGCCAGTTGCCACTCAGGTGTTCTGTGCCTTTGTCCTGTGCTGGCCCTGAGGCACGCTGGACGTGGGGCCCAGTGCACCCTTGCTGACTCC---AGCTCCTAGCATGGGA s panTro1.chr19_random 2605563 192 + 57627672 GGTCACTGTTGGGGGCACGAGCCGGGTGTTGGTGCCAGG-------TGAGGGTGCAGGAGGGGCCTGGGTCAGGAGCCCGGGTACGGGCCAGGGCCAGTTGCCACTCAGGTGTTCTGTGCCTTTGTCCTGTGCTGGCCCTGAGGCACGCTGGATGTGGGGCCCAGTGCACCCTTGCTGACTCC---AGCTCCTAGCATGGGA s danRer1.chrNA 239205044 167 + 390413307 GGCCTCTACTGCAAGTCCAGGGAGAGAGGTGAAGCCCTGGGTAGCTTGCTGGTGTCAGAGGCCCCTGGGTTGAGGGCCAGAGGGCAGCCTAGGGCC-----------------------------TCTACTAATAGTCCAGGGAGA-----GAGGTGGAGCCCTGGGTA-GCTTGCTGGGGTCAGTAGCCCCTGGGTGGAGG a score=91.0 s hg17.chr17_random 424974 1 + 2618010 A s rn3.chrUn 69967712 1 - 75822765 A a score=3997.0 s hg17.chr17_random 424975 10 + 2618010 GTAAGAGGGC s panTro1.chr19_random 2605755 10 + 57627672 GTAAGAGTGC s mm5.chr11 121430457 10 + 121648857 GTAGAAGTCC s rn3.chrUn 69967713 10 - 75822765 GTGGAAGTCC s danRer1.chrNA 239205211 10 + 390413307 GCAAGGGGGC a score=118413.0 s hg17.chr17_random 424985 472 + 2618010 CAGTCAGACCTGGGAA-----------------AGGGCCACC--GACTGGTCCTCATAGCTTTGCTTTTCCACTTTC----CTGTCCCTTAAAGAGCCACACAGAAAA-TGGTATCTGAATCAAGTACAATCTCATTACAGATGCGTCTGGCCTGGAAACACACCCGCCAAC-TGTGCTGATTGGCTGGAACCATGCAGGCTTTGGCTTTTGTGCTCCTTGTTAACATTTTTGTTCCTATCTACACTAATTAGTCATAAACAGAGGGACAAAAACTCCCCAAATATGGGAGATGCTAATGGCCTGTTAGGAGGCCTCGCCTGCAGAGCTCATCTCATTCCTTTTGCAAGAGCAGAAGTTGTGCTTTAGTTTAGAAACAAGGAATGTGGATCTT-----------------GTCTGGGCATTGAG-TTTTCGGGTACTCCAAGCTTTCAGAGCTGCCGCAGAAGATTTTCGGGGGTCTTGCTGGCTCTGTGACAAGCCG--CCGGAGTCTTGCTCAGT s panTro1.chr19_random 2605765 473 + 57627672 CAGTCAGACCTGGGAA-----------------AGGGCCACC--GACTGGTCCTTATAGCTTTGCTTTTCCACTTTC----CTGTCCCTTAAAGAGCCACACAGAAAA-TGGTATCTGAATCAAATACAATCTCATTACAGATGCGTCTGGCCTGGAAACACACCCGCCAAC-TGTGCTGATTGGCTGGAACCATGCAGGCTTTGGCTTTTGTGCTCCTTGTTAACATTTTTGTTCCTATCTACACTAATTAGTCATAAACAGAGGGACAAAAACTCCCCAAATATGGGAGATGCTAATGGCCTGTTAGGAGGCCTCGCCTGCGGAGCTCATCTCATTCCTTTTGCAAGAGCAGAAGTTGTGCTTTAGTTTAGAAACAAGGAATGTGGATCTT-----------------GTCTGGGCATTGAG-TTTTCGGGTACTCCAAGCTTTCAGAGCTGCCGGAGAAGATTTTCGGTGGTCTTGCTGGCTCCATGACAAGCCGC-CCGGAGTCTTGCTCAGT s mm5.chr11 121430467 492 + 121648857 AAGTCAAGCCTGAAAAGAATTATTTTTCAA-TGAGGACCACTCAGACTGATCCTAAAGTTTCTGATTTTGCATTTTC---TCTGTCCCTTAAAGGGTCACATGGAAAAGTATTATTTGAATCAAACATAATCTTG-TGTATATAC-TCTGGTGT-AAAACAGATCCACCTATGCTTGCTGAATGGTTGGAATCATGTGG--TTTGGGGTTTG----ACTTCTCAACA---TTATTCATAACTA-ACTGATAAGGCATGGATGAAAGGACAAGGA-TACGTAGATGTGGGAGAAGCTAATGGTCTGTT-GGAAGTTTTGCTTGTAGAGCTCATCTGCTTGCCTTTGCAAGAGTAGAA---ATGTTTTGACATAAAAATCTAAGATGAATGCCTTATCCAGCATGTTAGATGATCTAGCTGCTGGGCTTTTCACATGACCCAAGTTTTGAGA---GTCTATGTAGATGTGAGAGAGTCTTACTGGCTTTATGAAAAATCCCTCTAGAGACTTGATTACT s rn3.chrUn 69967723 493 - 75822765 AAGTCAAGCCTGAAAAGAATGATTTTTCAAGTGAGGACCACTCAGATTGATCGTGAAGTTTCTGATTTCCCATTTTTTTTTCTGTCCCTTAAATGGTCATAGGGAAAAGTATTATTTGAACCAAACATAATCTTG-TGCGTATAT-TCTGCTGT--AAATAGATTCACCTGTGCTTGTTAAATGGTTGGAATCATGTGA--CTTTGGATTTG----ACTTCTTAACA---TTATTTCTAACTA-ACTGATAAGGCATGGATGGAAGGGCAAGGA-TCCCTAGATGTGGGAGAAGCTAATGGCGTGTT-GGAAGTCTTGCTTGTAGGGCTCATCTGTTTGCCTTTGCAAGAG-AGAA---ATATTTGGACATAAAAATCTAAGATGTATACCTTATCCTACATGTTAGATGATCTAGGTGCTGGGCTTTTCAGATGACCCGAGTTTTGAGA---GTCTGTGTAGATGTGAGAGAGTCCTACTGACTTTGTGAAAATCCCT-CTAGAGACTGGATTAGA a score=7873.0 s hg17.chr17_random 425457 61 + 2618010 ----------GCTGAAGGCACACCCCAACATGGCCATCACCGGCAGGCCTGTCCAGCCCTGTCCTCATAGc s panTro1.chr19_random 2606238 61 + 57627672 ----------GCTGAAGGCACACCCCAACATGGCCGTCACCCGCAGGCCTGTCCAGCCCTGTCCTCATAGC s rn3.chrUn 69968216 70 - 75822765 GACTAGCAAAGCT-AAGGTAACCTCCAGGCTTTCCCACACTTCCAGGTGTGTCTAGACCTGTTCTTGAAGC a score=5011.0 s hg17.chr17_random 425518 57 + 2618010 ttggtgctgtccttgccatagtgagtgagttctcatggatctggttgtgtagaagtg s panTro1.chr19_random 2606299 57 + 57627672 Gtggtgctgtccttgccatagtgagtgagttctcaaggatctggttgtgtagaagtg a score=1898.0 s hg17.chr17_random 425858 190 + 2618010 TGAGTCAGGGCTCCCCACAGGCCCATGTGCGATGATGGAGCTGTGAGGAGCCTCGTGGTTTTCCAGGCTCACTCTCCACGGGCCTCCTGGTCTCATGTCCTGCTCAGTCCTCCCTCCCCTGGTGGAGCAGCGTCTCATGCTGGGACTTTCTGGCTCCATTTCAGGGTCTCTCCTTCCCTGCTGGTGGCCC s mm5.chr11 121430974 141 + 121648857 TGAGTTAAACTTCCTCATGGACCTGTAAGGGACAGCCAAGCTTTAAGGGGTTGC------CTCCAGTTGTACCCTCCTTTAGCCATTTGTTCTTATTAGCTACTCA------------------------CGTCTC-----------TTC--------TTTCAGGACCTCTCTCTTCTTGAAGGTGGCTG a score=-2663.0 s hg17.chr17_random 426048 196 + 2618010 AGCTCCAGAGACTCAGAGGAACTCAGATGGGGTGCACGGGCGTCCTCTCAGGCCTGTGC-------CCAGGGAA--------------------------------------GTCTAGGTGTG-AGCCGAACAGAGCCCCTGGGACCAAATGGCCCGCGACCGCCCCCTTCAAGGACCGTGGTGGAACCC------GCTTGGTGTAGCTCTGTGCCCCTCAACAGACTGCCACGAA---ATCCTAAGACCT s mm5.chr11 121431115 192 + 121648857 AACTCCTGAGACTTGGA--AATCCAGGCAGAG-GCACCAGGGTCATCTCGGGCTCCTAA-------TCTAGCTA-------------------------------TATTTGCATCTAGGAGTG-AGTAGGGT--AGCATCTGACCTCCAGTGGCCAGTCACTTTCTTATCACAGAGTA--GACGGGATCC------CCTTGGTATAGATCAG---CCCTCAGCAGA-TGACAATGG---ATCTTGAGTTTG s danRer1.chrNA 177039286 239 - 390413307 AGCTTGCTGGGGTCAGAGGCCTCTAGGTGGAGGGCCAGGGGGCACCCTCGGGCCTATACTGCAAGTCCAGGGAGAGAGGTGGACCCTTTTGTAGCTTGCTGGTGTCAGGGGCACTTAGGTGGACGGCCAAGGGGCACCCTGGGGCCTATACTGCAAG-----------TCCAGGGAGAGAGGTGGACCCCTGGGTTGCTTGCTGGGGTCAGGGGCCCCTAGGTGGA-GGTCCAGGGGGCACCCTGGGGCCT a score=1751.0 s hg17.chr17_random 426244 41 + 2618010 TGAGAGCTTGGGTTCTGCCTCGTTTCTCCTGGAGCTGCCTT s mm5.chr11 121431307 41 + 121648857 TGAGGGTTTGGATTCAACTTCATTTCTCTGGAATCCATTTT a score=200578.0 s hg17.chr17_random 426575 2295 + 2618010 acttagtggcttaaagcaacacacacttatcatcttatggttttggaaatcagaagtcccacatgggtttcactggactaaaccaaggcgtcagcaagagtctcttctttctggaggctctggggagaattcacttccgtgcctcttccagcttctagaggttacctatcttccatgcctctgggttcctccctccacctctaaagcaaactcatcactctgacttttgcttccgtagttacatcttctctgatgctaacagtgttgcttccttcttgtgaggactttcatgattgcactggccacctggttaatccaggataatcccccacctcaagacccttaatttaatcacacctgcaaactccctcttgacatataaggtagtggggagtgagatgtggacatctttgggggccattatcctgctgactacaGTTGGCCCCTGGCTTCCAAAGACTCACAAGGATGCcactccaccccagcatctgtgaacatctacctcattacagcattaagtcaaagtccagaaatctcatctaaatttacttagttcaagtgtcccaaatttcataatgtaaattagggttgggttagggtataatccatccagatgcataattctgctccacctgtaaacctgcaaaactcaagaaacaaatgatctgctgtcagacccaacattaggacaggcatcagttgacagttatagacattctcattcaaaaagggagaaaatggaaggaaaaaaggagtcctcagtcccaagcactttgaaaaaccagctaagcaaacattagattnnangnnntnnnanannnnncnnnngtggnnncnaggtccaacatctgggctcatggctccacccttggagtcatccttcctttttcatgaaaggtagcacatgtttgccactgagtggttttatcagcctgcttccttcctgcagaanttttggagagtccaacagtgctctttcatctttcatttcatactttctctgttcccttcagtccaagttggcagtgtttctgctgatataacattctcaagaactttgtggtctcctgtgtatgtcacacacaggattcactctatttcacaagaaggtcctccctaggcctttcacatagtcctatctctgtcttctgctgagatgactgaggggctcctgagtcattcatctgaagtcttcaaaggctcctctgtgtgactgaACACACTGACTTTTGATAGTCTCAAGGGACTGGTAGAATGTTGTCCAGCCACTGTGTTGGCTTTCTTTTCANAGCACAGATNNATGNCACNatatgcacacatacatactgcacacacat-acatactatatacaatacagtgggtatacatatngacacactacagcacatgcacacacacacacattctgcacacaatactgcatgcatgcacatacggcacagcacatacatgcac-ac-atgcTGCAGCACACACAATACTGCACACAGAGCATACAATCCTGCAAGTACACCATACACAGTATGCACACATACCACATAAACCTTATGGATACCCTG-TGTATACACCAGATATGTTAAACATGCCTTGTGCACACACAGAATGCATGCAAACATATGTGCTCTGTACTCA-TAGAGAAACACATCCACACACACACCATACAACATGTGCACACCCACAGGAGTGATAGAGAAGCTATAATATAAACATGCAACTGTGCTCTAANATCTTGCCTGATCATATCAGAGAANCTACCAAGGCAGGGTTGAGAAGTGGGAGCAATGACAGGAAAGCAGACAGCAGAAATTGAAGGACCCAAAGCCAGACACAACCA-GGACCAGGTGCTCCCCAGCAGT-CTGGAGCATGAGCAGCATGGTGCCCAAGGTCTGG-ACATGGCTGTGTGGCCACATCTCACTGTAT--CGCCCCAGCAATGACCACATGTCCCCCACCAAGGAGGACACTTGTCCTGGGGCTGGGATGGTGACTCTGCTGAGCCCAGGGAACAGGAGCAGGCAAATTGGGGTGGGGGNNGGGGGGGTCCCAGGGTTNCTGCAGGCACTACCTCAAAGGTTACAGGAAGAGGGAGAACCNAGACNAGAGAGGCCCTGCTGCACCCTTCAGGAGCAGATTGCCAGGAACATCAGGGATTCACCTGGCCCTGAGCTCAAGTCGCAGCACCTtgtgac-ttcaagcagactttgtaacccttaagtctcagcatcttcatccattaaagggagttggggaggcccaccccagagagctgctgtgaggacaaaatgagGGTCTGGAAGAGTA s panTro1.chrUn_random 236858894 2298 - 240967748 acttagtggcttaaagcaacacacatttattatcttacagttttggaaatcagaagtcccacatgggtttcactggactaaaccaaggcgtcagcaagagtctcttctttctggaggctctggggagaattcacttccgtgcctcttccagcttctagaggctaccta-cttccatgcctctgggttcctccctccacttctaaagcaaactcatcactctgacttttgcttccgtagttacatcttctctgatgctaacagtgttgcttccttcttgtgaggactctcatgattgcactggccacctggttaatccaggataaccccccacctcaagacccttaatttaatcacacctgcaaactccctcttgacatataaggtagtggggagtgagatgtggacatctttgggggccattatcctgctgactacaGTtggcccctggcttccaaagactcacaaggatgccactccaccccagcatctgtgaacatctacctcattacagcattaagtcaaagtccagaaatctcatctaaatttacttagttcaagtgtcccaaatttcataatgtaaattagggttgggttagggtataatccatccagatgcataattctgctccacctgtaaacctgcaaaactcaagaaacaaatgatctgctgtcagacccaacattaggacaggcatcagttgacagttatagacattctcattcaaaatgg-agaaaatggaaggaaaaaaggagtcctcagtcccaagcactttgaaaaaccagctaagcaaacattagatttcaaggcctgagaaaataatcctctgtgggtcccaggtccaacatctgggctcatggctccacccttggagtcatccttcctttttcatgaaaggtagcacatgtttgccactgagtggttttatcagcctgcttccttcctgtagaa-ttttggagagtccaacagtgctctttcatctttcatttcatactttctctgttcccttcagtccaagttggcagtgtttctgctgatataacattctcaagaactttgtggtctcctgtgtatgtcacacacaggattcactctatttcacaagaaggtcttccctaggcctttcacatagtcctatctctgtcttctgctgagatgactgaggggctcctgagtcattcatctgaagtcttcaAAGGCTCCTCTGTGTGACTGAACACACTGACTTTTGATAGTCTCAAGGGACTGGTAGAATGTTGTCCAGCCACTGTGTTGGCTTTCTTTTCAGAGcacagattcatg-cac-atacgcacacatacatactgcacacacatcacatactatatacaatacagtgtgtatacacatagacac--tacagcacatgcatgcacacacacattctgcacacaatactgcatgcatgcacatacggcacagcacatacatgcaCGACGATGCTGCAGCACACACAATACTGCACGCAGAGCATACAATCCTGCAAGTACACCATACACAGTATGCACACATACCACATAAACCTTATAGATACCCTGCTGTATACACCAGATATGTTAAACATGCCTTGTGCACACACAGAATGCATGCAAACACATGTGCTCTGTACTCGCTAGAGAAACACATCCACACACACACCATACAACATGTGCACACCCACAGGAGTGATAGAGAAGCTATAACGTAAACATGCAACTGTGCTCTAAGATCTTGCCTGATCATATCAGAGAAGCTACCAAGGCAGGGTTGAGAAGTGGGAGCAATGACAGGAAAGCAGACAGCAGAAATTGAAGGACCCAAAGCCAGACACAACCATGGACCAGGTGCTCCCCAGCAGTCCTGGAGCATGAGCAGCATGGTGCCCAAGGTCTGGCACATGGCTGTGTGGCCACATCTCACTGTATAACGCCCCAGCAATGACCACATGTCCCCCACCAAGGAGGACACTTGTCCTGGGGCTGGGATGGTGACTCTGCTGAGCCCAGGGAACAGGAGCAGGCAAATTGGGGTGGGGCGTGGGGGGGTCCCAGGGTTCCTGCAGGCACTACCTCAAAGGTTACAGGAAGAGGGAGAACC-AGACCAGAGAGGCCCTGCTGCACCCTTCAGGAGCAGATTGCCAGGAACATCAGGGATTCACCTGGCCCTGAGCTCAAGTCGCAGCACCTtgtgactttcaagcagactttgtaacccttaagtctcagcatcttcatccagtaaagggagttggggaggcccaccccagagagctgctgtgaggacaaaatgagGGTCTGGAAGAGTA a score=14869.0 s hg17.chr17_random 428901 180 + 2618010 GTGTATGGTGTACTTGCAGGATTGTATGCTCTGTGTGCAGTATTGTGTGTGCTGCAgcat-gt-gtgcatgtatgtgctgtgccgtatgtgcatgcatgcagtattgtgtgcagaatgtgtgtgtgtgtgcatgtgctgtagtgtgtctatatgtatacccactgtattgtatatagtatgt s panTro1.chrUn_random 4107341 180 + 240967748 GTGTATGGTGTACTTGCAGGATTGTATGCTCTGCGTGCAGTATTGTGTGTGCTGCAGCATCGTCGtgcatgtatgtgctgtgccgtatgtgcatgcatgcagtattgtgtgcagaatgtgtgtgtgcatgcatgtgctgta--gtgtctatgtgtatacacactgtattgtatatagtatgt a score=18867.0 s hg17.chr17_random 429081 245 + 2618010 atgtgtgtgcagtatgtatgtgtgcatatgtgcatgaatCTGTCCCCAA----ACTACTCTCCTTTTTCTTCTATGGGAAAGGAACAGGAACAATGGACCAGTCATACAGCATCTCAGGGGCCCTAGCCCCCTGCTTGTTCCTCTGGGCTCTCCAGCCCAGCAAGGCCCCAGTCCTCCCTGTTGTGGGTCCCTCACGAGCTGCCAGNANGGGGCGTGGCCCCTCACGAGCTGCCAGAGGGGGCGTGGTC s panTro1.chrUn_random 236861395 241 - 240967748 ATGTGTGTGCA-TATGTATGTGTGCGTATGTGCATGAACCTG-----AACGCAACTACTCTCCTTTTTCTTCTATGGGAAAGGACCTGGAACAATGGACCAGTCATACAGCATCTCAGGGGCCCTAGCCCCCTGCTTGTTCCTCTGGGCTCTCCAGCCCAGCAAGGCCCCAGTCCTCCCTGTTGTGGGTCCCTCAGGAGCTGCCAG-AGGGGGCGTGGTCTCTCACGAGCGGCCAGA-GGGGCGTGGTC a score=2319.0 s hg17.chr17_random 429326 24 + 2618010 CCACAGcactctagcctctgcctc s panTro1.chrUn_random 236862510 24 - 240967748 ccacagcactctagcctctgcctc a score=66730.0 s hg17.chr17_random 429350 513 + 2618010 tgtggacacatggcctcctcctct---tctgtcttctaagaatacttatcagtggact-agagcccacccagatagacaagaatggtctccccaactcaatacccttcacttaattaaatctgcaaagaccccttttccaaataaggtcacagtcccaggttctgggaattaggatgtggacatatatctttg--agggttaccctcagcccactacaGATGTTGTGTTAGGTGTTCCATATGGAAGCGTCCAGCACAAAGCAAAGATGCAAGAAGNACGGCTGCAGGTGTTGCAACAGATGTGGTGGGGTTGTTTCCAGAACCTGCAAGCTCCACAGAGCAGGGACCTTCTCACCTGTGCCACCACCAAATTCCTAG--CTAATTAGACT-------GGGGTGGCCAGAAGGATGCTTCTTGGGTCTCAGGGA--GTTAAATCTAGCTCCCTTCAACTGGGGTACACAGGCCCCAGCCTT-CACCTGGTCCTCTGCTCCCACCCACCTGCCCAGCATCCTCTTGTCAGAT s panTro1.chrUn_random 236862534 512 - 240967748 tgtggacacatggcctcctcctct---tctgtcttctaagaatacttatcagtggact-agagcccacccagatagacaagaatggtctccccaactcaatacccttcacttaattaaatctgcaaagaccccttttccaaataaggtcacagtcccaggttctgggaattaggatgtggacatatatctttg--agggttaccctcagcccactacaGATGTTGTGTTAGGTGTCCCATATGGAAGCGTCCAGCACAAAGCAAAGATGCAAGAAG-ATGGCTGCAGGTGTTGCAACAGATGTGGTGGGGTTGTTTCCAGAACCTGCAAGCTCCACGGAGCAGGGACCTTCTCACCTGTGCCACCACCAAATTCCTAG--CCAATTAGACT-------GGGGTGGCCAGACGGATGCTTCTTGGGTCTCAGGGA--GTTAAATCCAGCTCCCTTCAACTGGGGTACACAGGCCCCAGCCTT-CACCTGGTCCTCTGCTCCCACCCACCTGCCCAGCATCCTCTTGTCACAT s canFam1.chrUn 84692692 478 - 91062872 TGTGGCCGCAT-CCCTCCGcccctgcctctcctttgtaaggacacatgccattgaattcaggaccgactcagat-------------------aactcag-gcccctcacttcattacacctgcaaacacacattttctacacggggtcccatccacagattccgggaaggaggaaggggac-----ccgttggtgggaccacaatcgggcctCTGCAGACAGTGTGCTGAAGGCTTCAGA-GCAAATGTCCGGCGCAAGACGGGGGCACGGGAGG-CCAGCTGCAGGTGCAGTGACGGGTGCTGT-TGGTCATTTCTAGAGCC-GCGAGCT-CACGGGGCCGGGATCTGTCCTCCGTGGCCGTCACGGAGGCCCCAGACCCAGTCTGCCTGGCGGGGGGGGCTGCTGGCCGGACGCTTCTCTGCTCCCAGCGAGTGTTCGGTCGGGCTCTGTGCGGCTGGGGTGCTCAGGGTGCTGCCTTGCAGCCACTCCTCTGCTGCC-CACACCCG--------------------- a score=16026.0 s hg17.chr17_random 429863 261 + 2618010 AGTGCTAGCCATGGCCCCCTTGAGGCATGGGCTGTGCAAGGTGGGGCCATGGCTGGCACTCAGTA-TGGGAGCAANGTCAGGTTNGGTGTCCCTGTTCNTCCACCCATCCAGAGGGAAG----ATGAAGGCCCGGGAAG--TGGTGCCTCTCAGTGTCTCTTACAAAGCTGGCTCTTCCCAGACAGTCACCTGTTAATCTTTAGTGCTTCTCAGTGTATAGAGTTGG----CTGGAAATGCCCCTCCGCCTCCC----------ACTCATCTTCT--------------ACCCTGG s panTro1.chrUn_random 236863046 261 - 240967748 AGTGCTAGCCATGGCCCCTTTGAGGCATGGGCTGTGCAAGGTGGGGCCATGGCTGGCACTCAGTA-TGGGAGCAATGTCAGGTTTGGTGTCCCTGTTCCTCCACCCATCCAGAGGGAAG----ATGAAGACCTGGGAAG--TGGTGCCTGTCAGTGTCTCTTACAAAGCTGGCTCTTCCCAGACAGTCACCTGTTAATCTTTAGTGCTTCTCAGTGTATAGAGTTGG----CTGGAAATGCCCCTCCACCTCCC----------ACTCATCTTCT--------------ACCCTGG s canFam1.chrUn 84693170 187 - 91062872 ----------GTGTGTCCCCTGAG---------CTGCGAGGTG----CACGACTCGCACTCAGTACTGGGGGC--------------TGCCCCTG------CACCCACCCAGAGGGAGGCAGAAGGAAGGCTTGAGGAG--CGGCGCA-GTCAGCATGCGT--CAGGGCAGGCCCTGCAGGGAAGGACACCGGTCTGCCCTGGGCCC------------------------CTGGAGG------GCCGCCTCTC----------ACCCCTTTTCA--------------------- s danRer1.chrNA 177041740 257 - 390413307 AGGGAGAGAGATGAACCCCTTGG----------TAGCTTGCTGGGGTTATGG--GCCCCTAGGTG-GAGGGCCAGGGGCAACCGTGGGGCCTATA-----CTGCAAGTCCAGAAGAGAG----ATGAACCCCTGGGTAGCTTGCTGGG-GTCAGAGGCCCCTAGGTGGAGGCCTCCTGGGGAAC-----TCTGTTG--CTTTACTGCAAGTCTAGGCAGAGAGGTGGCCCCCTGGGTA---------GCTTGCTGGGGTCAGAGGCTCCTAGGTGGAGGGCCTGGGGGGACCCTGG a score=6469.0 s hg17.chr17_random 430124 106 + 2618010 CATCAAAGC-TGCA---GCTCCAGGGACACCGAGGAG------AGGCCAGCTGGCCACAG--TGTGTCAGG-GCAGCCGAGCTGGCC-CGCCAT---GCACTGTGTCCTTTCCACTGCACCAC s panTro1.chrUn_random 236863307 106 - 240967748 CATCAAAGC-TGCA---GCTCCAGGGACACCGAGGAG------AGGCCTGCTGGCCACAG--TGTGTCAGG-GCAGCCGAGCTGGCC-CGCCAT---GCACTGTGTCCTTTCCACTGCACCAC s mm5.chr11 185610 100 - 121648857 CATTTCAGC-TGCA---GCTCAAAGAAAGCTAATGAG------AGG-CTATAGGTCATAGGTCATGTAAGGAGTAGCCTAGCTGGCCTTGGCTG---GAGATCTGTCCTCTCTA--------- s canFam1.chrUn 84693357 101 - 91062872 CAGCGCAGAGTGCAGGTGCTCCGGGGCC-CCAAGGAGCCTGCTAGGCCAGCTCCTGGGAG--CATGTGGGG----CCCTGGCTGGCTCGGCCCT---GCACGCTGCCCTCC------------ s danRer1.chrNA 177041997 109 - 390413307 GGCCTATAC-TGCA---AGTCAAGGGACATCGGTGGACCCC--TGGGTAGCTTGCTGGGG------TCAGA-GGCGCCTAGGTGGAG-GGCCATGGGGCACCCTGGGGCCTATACTGCAAGAC a score=5585.0 s hg17.chr17_random 430230 77 + 2618010 ATCATCTCTGCAAAGCCAAGGGCTTCAGGAGCAGAGGGACAGGGCAACTCCTGGTGTTAACTTTGCCTCCATCCTTG s panTro1.chrUn_random 236863413 77 - 240967748 ATCATCTCTGCAAAGCCAAGGGCTTCAGGAGCAGAGGGACAGGGCAACTCCTGGTGTTAACTTTGCCTTCATCCTTG s mm5.chr11 185710 49 - 121648857 ----------------CAAGAG-----AGAGCAG------GATGCTTATCCTATTTTT-ACCTTGCCTTAATCCTTC s canFam1.chrUn 84693458 37 - 91062872 ----------------CAAGGGCGTCAGGAGCCGAGGGATGAGGGCCCCTCGG------------------------ a score=100.0 s hg17.chr17_random 430306 1 + 2618010 G s danRer1.chrNA 164333708 1 - 390413307 G a score=6583.0 s hg17.chr17_random 430307 231 + 2618010 AGCCATTCCTGTGGCAGGTGGCATTGTACACTCACANTC-CTTCCTTCCCTCCCAGTCCCAGCACCATGGATTGG-AAATGGG--ACTTGCTNTGACCA-------CTGAAGTGTGG--AAGGGGACA--GTGGGGGCAGTTCTG--AGTACAGGT----------AAGTATGTGCTTCCAC--TTGCCCTCCTGCACGCCTGG---CCTGGGAAGTGCCCCGGGGGGACCTTCTGCCTCTTCC----ATCAGGTCTCAAAATGAGA s panTro1.chrUn_random 236863490 231 - 240967748 AGCCATTCCTGTGGCAGGTGGCATTGTACACTCACAGTC-CTTCCTTCCCTCCCAGTCCCAGCACCATGGATTGG-AAATGGG--ACTTGCTGTGACCA-------CTGAAGTGTGG--AAGGGGACA--GTGGGGGCAGTTCTG--AGTACAGGT----------AAGTATGTGCTTCCAC--TTGCCCTCCTGCATGCCTGG---CCTGGGAAATGCCCCGGGGGGACCTTCTGCCTCTTCC----ATCAGGTCTCAAAATGAGA s mm5.chr11 185759 215 - 121648857 AGCCA-CCCCATAGCAGAAG--ATTGT------------------TTTCCTCCCATCCTCAGTACCACAGA-TGG-CCATGAA--ACCTGGTGTAAATA-------TTGGAATGTGGTCAACAGAACA----AGGAATTGTTCTG--AGCAAAGGTTTCAGAGGCAAAACACATCCTGCTA-----ACCCTCTTGCAGTTTCTG---TCTGGAACTTGCCCTATCATG--CTTCTGCATCTTCC----ACAGGATCTTAGAAAGAGG s rn3.chrUn 5822713 221 + 75822765 AGCCACTCCCGTAGCAAAAT--ATTGT------------------TTTCCTCCCATCCTCAGTACCACAGGTGGGCACACGGG--ACCTGG-GTAAGCA-------ATGGAATGTGGTTGAACGGACA----AGGAGTTGCTCTG--AGCAGAGGTTTCAGAGGCAAAACACATTCTGCTC-----AACCTCTTGCAGTTTCTG---TCTGGAACTTGCCCTGTCGTG--CTTCTGCATCTTCCTTAGACCCTTCCTTAGAAAGAGG s canFam1.chrUn 84693495 180 - 91062872 GGCCATGTCCTTGGAAAACG-------GCGCCTGGAGCCAAGTCTTGCCCCACCGCAGCCGCCACCCCAGCCTGT---------------------------------GAACTGTGG--GAGAGGGCA----GTGGGCGGGTCTG--GGCAGGGGC---TCAGACACGAGACCTGCTGCTGC--TCATCCTCACGC---CCCGG---C--------TGCTCCACGGGA--------------------GGACAGGCCCAGGGAGCGG s danRer1.chrNA 164333709 244 - 390413307 AGGCCCCTATGTGGAGGGCA--AAGGGGCACCCTGGGGC------CTACACTGCAAGTCCAGCGACATCGGTGGACCCCTGGGTAGCTTGCTGGGGTCAGAGGCCCATAGATGGAGGGCCAGGGGGCACCCTGGGGCCTATACTGCAAGTCCAGGG----------AGGGAGGTGGATCCCTGGGTAGCTTGTTGGGATCTGTGGCCCCTTGGTGGAGGGCCAGGGGCACCCTTTGTGCTATAC----TGCAAGTC-CAGGAAGAGA a score=-5628.0 s hg17.chr17_random 430538 83 + 2618010 G-----CCAAGCCACACACCTGAGAGGCACCTGCAGCCTGAAGTAGATG---CTGCGGCCACTACACCGACATAGGCATGAGAGACAAACA s panTro1.chrUn_random 236863721 83 - 240967748 G-----CCAAGCCACACACCTGAGAGGCACCTGCAGCCTGAAGTAGATG---CTGCGGCCACTACACCGACATAGGCATGAGAGACAAACA s mm5.chr11 185974 55 - 121648857 G------------------ATGAGGAGTGACTCTAATATG----AGATG---TTGCGGCAG--AAGCGGAAAT-----TCAGAGAAG---- s rn3.chrUn 5822934 55 + 75822765 GAAGAGAAAAGACTCTAATATGAGATGT----------TGTGCCAGAAG-----------------CAGAAAT-----TAAGAGAAA---- s canFam1.chrUn 84693675 82 - 91062872 G-GCCTCCGGTCCGGGTGCCAGAGAGACAAGCGCAGGCCC----AAACGCCCCCGCGGCCTCGACGCACACGCGTGAGCGAGAGACA---- a score=38398.0 s hg17.chr17_random 430621 227 + 2618010 GCTTCTTCTAAACCACTGGGATTGGTGGGGCCATTTGTTACACAGCATTATTATAGCAATAGCTGACCAATAGAgaatttggtgtcaaaagtaggtgctgccataataaaacctaaagtattaatatgtggcactggctgatagactgggtggtgaataaactactttagaaagtcggggaatggcaacttgtgacatgtaa---------tggtaaaaaaaaaatcactaacatg s panTro1.chrUn_random 236863804 226 - 240967748 GCTTCTTCTAAACCACTGGGATTGGTGGGGCCATTTGTTACACAGCATTATTATAGCAATAGCTGACCAATAGAgaatttggtgccaaaagtaggtgctgccgtaataaaacctaaagtattaatatgtggcactggctgatagactgggtggtgaataaaCTACTttagaaactcggggaatggcaacttgtgacatgtaa---------tggt-aaaaaaaaatcactaacatg s mm5.chr11 186029 142 - 121648857 -----TCCTAACCCAGTGGGATCAGCAGGG-CAGTTAGTGTACAGCACTGTTGTAGCAATAGCTGA-----AAAGGATCTGGGGCCCAAAGCA-----------------------------------------------------------------------------------GGGAAACGGCAAATTGTGTTATGTAATTTTTGTTTTGTTTTGTCTTAAATCACAAAAGTG s rn3.chrUn 5822989 147 + 75822765 -----TCCTAAACCAGTGGAATCAGCAAGG-CAGGTAGTATACAGCATTGTTGTAGCAATAGCTGACTAGAAAAGAATCTGGTGTCAAAAGTT-----------------------------------------------------------------------------------GTGAAATGGCAATTTGTGTTATGTAATTTTTGTTTTGTTTTGTTTTAAATCACAAAACTG a score=48529.0 s hg17.chr17_random 430848 89 + 2618010 ggctcctgtaataacttagaaagcaggaaacatacccaatgtaatcctggcattgggtgaaaagctttccaagcaaaatgtctctagag s panTro1.chrUn_random 236864030 89 - 240967748 ggctcctgtaataacttagaaagcaggaaacatacccaatgtaatcctggcattgggtgaaaagctttccaagcaaaatgtCTCTAGAG s mm5.chr11 186171 83 - 121648857 ----CCTCCAATAACCTAGAAAACAGGAAATGTACCTAATGTAGCCCTGGCTTT--GCAAAGAGCTTTCCAAACAAAACATCACCAGAA s rn3.chrUn 5823136 83 + 75822765 ----CCTCCAATAACCTAGAAAACAGGAAATGTACCTAGTGTAGCCTTGGCTTT--GCAAAGGGCTTTCCAAGCAAAACATCACCAGAA s canFam1.chrUn 84693914 88 - 91062872 GGCTCCTGCGTTGTCCTGGAAAACAGGAAACGCACCTAACGCAACCCCAGCTCCAGGCGAAGGGC-TTCCAAGCAAAATATCCCGGGGG a score=55218.0 s hg17.chr17_random 430937 221 + 2618010 tgaa-taatcattgctactgcatttgataaagtacctcaa----gaaaaagataagctcagaaaggaaagccaagcttgcagcagaattgagagaaaa-catagggagctcagaaattCTAGCATTTGCAAGATTAAAAATTTAGGC--TTTTTTCAGCCAATAATT----AATATATTGAGGAGTATCTTGAGCTAGAAAAGCTTTTTAAGAATTAAAACTTAGCATCAGGG s panTro1.chrUn_random 236864119 221 - 240967748 TGAA-TAATCATTGCTACTGCATTTGATAAAGTACCTCGA----GAAAAAGATAAGCTCAGAAAGGAAAGCCAAGCTTGCAGCAGAATTGAGAGAAAA-CATAGGGAGCTCAGAAATTCTAGCATTTGCAAGATTAAAAATTTAGGC--TTTTTTCAGCCAATAATT----AATATATTGAGGAGTATCTTGAGCTAGAAAAGCTTTTTAAGAATTAAAACTTAGCATCAGAG s mm5.chr11 186254 230 - 121648857 TGAATTAGTTGTTTCTACTGTGCTCAGTAACATACCTTGAAGGGGAAAAAGTTAATCCACAAAAGAATAAGCAAATTGGCAGAAGAACTGAGAGAAAA-TATAGGAGTCCCAGAAG-TATAGCTTTTGTGAGACAAAAAACTGTGATTGTTTCTTCAGCTGATAATTGTGGAATATTCAATCTAGGGCCTTCAACTAGAAAAGGCTTCC-AGAATGTAAGAGAGTTATCAGGG s rn3.chrUn 5823219 227 + 75822765 TGAATTAGCTATTTCTACTACGCTCA--AAAACACCTTGAAGGGGAAAAAGTTAATCCACAAAAGAATAAGTAAATTGGCAGAAGAACTGAGAGAAAAGTAGAGGAGTCCCAGAAG-TATAGCTTTTGCAAGACGAAAAAATGTGATCATTTCTTCAG-TGATAACGGAGGAATACGCAACCAAGGACCTTTAACTAGAAAAGACTTCC-AGGGTGTAAGA-AAGCATCAAGG a score=7839.0 s hg17.chr17_random 431158 81 + 2618010 CACCGTGAATTCGAGTGCAGACCCCAGGCCCCACCTCAGGGCTCAGGATGACACCCCCTGATGGCCGCCTGTTCACATCCG s panTro1.chrUn_random 236864340 81 - 240967748 CACCGTGAATTCGAGTGCAGACCCCAGGCCCCACCTCAGGGCTCAGGATGACACCCCCTGATGGCCGCCTGTTCACATCCG a score=10154.0 s hg17.chr17_random 431239 79 + 2618010 AGGCAACTAAGAACAGA-----GGAGGCGACTCTCAGAGCCCCGGCATCTGGGATGTGGGCACCCTTGGCAGCCTCAGGGATTT s panTro1.chrUn_random 236864421 79 - 240967748 AGGCAACTAAGAACAGA-----GGAGGCGACTCTCAGAGCCCCGGCATCTGGGATGTGGGCACCCTTGGCAGCCTCAGGGATTT s mm5.chr11 186566 78 - 121648857 AGGCAG--AAAGACAGACAGACAGACACAACTCTCAAAGAGCAAG-GTCAAGGA---GTGAACACTTTGCAATCATAGGGATTT a score=55572.0 s hg17.chr17_random 431318 247 + 2618010 CTGCCACCGTGGGCCTTATCTCAGTGTTTTCAGTAGTTGGAACAGCCCCATAGCAGCCGCTGAGTCTGCCATCCTGTTATGAAGGAAATACGCTGAGGGAAAGGGGGTATGAGGCTGGCGC--AGACAATAAACAGAGGTGTGCCAACCGGGAAACACAACACACAGGGAGGCTGCAGTCATCACCCGCAGACACCAACATCCCTGC--CCTGAACTAACCTTCCCCGCGTCTCGATTCTCTGCCAACAGC s panTro1.chrUn_random 236864500 247 - 240967748 CTGCCACCGTGGGCCTTATCTCAGTGTTTTCAGTAGTTGGAACAGCCCCATAGCAGCCGCTGAGTCTGCCATCCTGTTATGAAGGAAATACGCTGAGGGAAAGGGGGTATGAGGCTGGCGC--AGACAATAAACAGAGGTGTGCCAACCGGGAAACACAACACACAGGGAGGCTGCAGTCATCACCCGCAGACACCAACATCCCTGC--CCTGAACTAACCTTCCCCGCGTCTCGATTCTCTGCCAACAGC s mm5.chr11 186644 221 - 121648857 CTGCT-TTGAGGGGCTTATCTCAGTGTTTTCAGTAGCTGGAACAG-CCCAGGGCAGCAGCTTTGTCTGCCATCCTGTTATGAAGG---------------AAGGGAGTGTGA--CTGACAC--AGACAAT-AACAAAAGTGAGCCAAGAAAG-AACAGGACACCCA-AGAGGCTA-AATCAT-GGCTGATGACACCACTA-CCCTGC--CCTGAGCTAACCTTCATGGTATCT-GAGCCTCTGCCAACATG s canFam1.chrUn 31609478 229 - 91062872 CTGCCGTCGTGGCGTCTGTCT--GTGTTTTCAGCGACTGGCACAGCCCC--GACAGCGGCCACGTCCGCCATCCTGTTATGAAGGAAACGCGCCCAGGGGAAGGG-GCGTGA-GCCGACGCGGAGACAATAAACAGAGGTGAGCCAAGAGGGCAGCGGGGTGACCAGGGCGGCCG----CCTCTGCCCACGGC-CCGGCACCTCCGCAGCCAGCGCTTCCCTTCCACGC-----------CCGCCTCCCGC a score=20496.0 s hg17.chr17_random 431565 89 + 2618010 GTTTTTACTTCAAACCAGCAGAGCCAGGTCA-CCCGCATCAGGAAGGGCAGAAGGTCATCCAGCCTGGACCTGGGGCCCTTCACCCCCAC s panTro1.chrUn_random 236864747 89 - 240967748 GTTTTTACTTCAAACCAGCACAGCCAGGTCA-CCCGCATCAGGAAGGGCAGAAGGTCATCCAGCCTGGACCTGGGGCCCTTCACCCCCAC s mm5.chr11 186865 73 - 121648857 CATTTGATTTCAGACCAAACCAGCCAGGTCA-CCCAAATCAGGATTAGC--------------TCTGGTCCTGGG--CCCAAACCCTTAC s rn3.chrUn 5823636 74 + 75822765 GGTTTGATTTCAGACCAAACCAGCCAGGTCACCCCAAAGCAGGATTGGC--------------TCTGGTCCTGGG--CCCAAACCCTTAC s canFam1.chrUn 31609707 59 - 91062872 ---------------------------GT---CCCGCAGCAGCATGGGGCAGGGGGTGTCCC-CCCGGACCCAGGAGCCCTCCTCCCCTC a score=0.0 s hg17.chr17_random 431654 12 + 2618010 NCNCTGTGAGGA a score=-1252.0 s hg17.chr17_random 431654 2 + 2618010 NC s panTro1.chrUn_random 236864836 2 - 240967748 TC s mm5.chr11 186938 1 - 121648857 C- s rn3.chrUn 5823710 2 + 75822765 CC a score=-100.0 s hg17.chr17_random 431656 1 + 2618010 N s mm5.chr11 186939 1 - 121648857 C a score=0.0 s hg17.chr17_random 431656 1 + 2618010 N a score=3385.0 s hg17.chr17_random 431657 9 + 2618010 CTGTGAGGA s panTro1.chrUn_random 236865340 9 - 240967748 CTGTGAGGG s mm5.chr11 186940 9 - 121648857 TTGTCAGGA s rn3.chrUn 5823712 9 + 75822765 TTGTCAGGA a score=38384.0 s hg17.chr17_random 431666 174 + 2618010 -GGCCTTCTGTGGCCTCAGCC---------------CCCAGGGCCCTGCCAAGAACCTGCCATCCTGGACATTTG---------CTCAGCCTGCCTGG---------------------------GAAACAGAGC---------------------------TCATCCTgcgtggc-------------cagcaa--cag--------agaag--ctgggatttggagctagatcaggtctaaatcttggc-----tctgcca----cttcctgtgtggccctggac s panTro1.chrUn_random 236865349 174 - 240967748 -GGCCTTCTGTGGTCTCAGCC---------------CCCAGGGCCCTGCCAAGAACCTGCCATCCTGGACATTTG---------CTCAGCCTGCCTGG---------------------------GAAACAGAGC---------------------------TCATCCTgcatggc-------------cagcaa--cag--------agaag--ctgggatttggagctagatcaggtctaaatcttggc-----tctgcta----cttcctgtgtggccctggac s mm5.chr11 186949 228 - 121648857 -GACTTGC-ATAGCCTCCGCC---------------CCCAGGACCCTGCCAAAAACCTGCCAGTGCAGATGTTTGTGAGGCTGCTCCAGTGCGCCAGGGTTACACTGGGAAGGGAGGTACTTTTTGAAGCTGTGG---------------------------TCACTGTGTTTGGTGTACAGAACATGACAGCAAGGAGG--------AGAAGTTCTGGGATTTAGAGCCAGACTTGGTCCAAATCCTGGCT--GTTTTGTCA-----TAATCATGTGGCTCTGAGC s rn3.chrUn 5823721 230 + 75822765 -GACTTGC-ATAGCCTCCGCC---------------CCCAGGACCCTGCCAAAAACCTGTCAGTGCGGATGTTTGTGTGGCTGCTCCAGTGAACCAGG---------------------------GTTACACTGGGAAGGGAGGTACTTTTTGAAGCTGTAGTCACTGTGTTTGGTGTACAGAACATGACAGCAAGGAGG--------AGAAAGTCTGGGATTTGGAGCCAGACTCTGTCCAAATCCTAGCTCAGTTTTGTCA-----TAATCATGTGGCTCTGAGC s canFam1.chrUn 31609766 190 - 91062872 GGCCCCTC-GGCCCCGCAGCCCCGTGGCCCAGCAGGCCCTGAACCCCACCAGGAGCCCGGCGCCCCACACGCGTG---------CTCGGCCCGCCCGC---------------------------GAATCGG-GC---------------------------TCATCC---------------------CAGGAAGGGAGGCCCCCCCAGGAG--CCGTGGTC----GCCGCCTTTGGTCCCAAATGCTGC-----CCCGTCACCTCCGCACCGTGCGGCCCTGGGC a score=22328.0 s hg17.chr17_random 431840 82 + 2618010 ------------ttccctgagtctcgatatacatgtatgtgaaCCCGAAACACAACCACTGCAATCT-TGAGGTGTTGTGGAGTGGTTGAGAGGT s panTro1.chrUn_random 236865523 82 - 240967748 ------------ttccctgagtctcGATATACATGTATGTGAACCCGAAACACAACCACTGCAATCT-TGAGGTATTGTGGAGTGGTCGAGAGGT s mm5.chr11 187177 95 - 121648857 AAGTTGTTTATGCTCTTCGAGTCTCAACATCCATTTGTGCGAATCAAAAATACCACTACCACCAACTGTGGAATGTGATAGAAAAAGCGAAAGAT s rn3.chrUn 5823951 95 + 75822765 AAGTTGTTTATGCTCTTTGAGTCTCAACATCTATTCACGTGTATCAAAAACACCACCACTACCAGCTGTGGTATGTGATAGAAAAAGCAAAAGAT a score=2058.0 s hg17.chr17_random 431922 12 + 2618010 GTGCACATTCTC s panTro1.chrUn_random 236865605 12 - 240967748 GTGCACATTCTC s rn3.chrUn 5824046 10 + 75822765 --GCTCATTGTC a score=100.0 s hg17.chr17_random 431933 1 + 2618010 C s danRer1.chrNA 181256300 1 - 390413307 C a score=2810.0 s hg17.chr17_random 431934 6 + 2618010 TAAAAG s panTro1.chrUn_random 236865617 6 - 240967748 TAAAAG s mm5.chr11 187640 6 - 121648857 TAAAAG s rn3.chrUn 5824056 6 + 75822765 TGGCAG s danRer1.chrNA 181256301 6 - 390413307 TGCAAG a score=15514.0 s hg17.chr17_random 431940 208 + 2618010 ACCACTTGAGCAATAGCTGGTTCTTTGAAAGTCTTGCTGGGA-CAACAG--AGGAAGAGCAGGGGAAGGAGGGGGCTGACGACGAGGACGATGACAGGATTATAAGGAACC-AAGACCGCTGCCGGCAAACCCCCTGCTCCATAAATGTGCAAGG---CAGCACGGGT--AGGAAGCGTCACACACAACCCCGGCCAGAGCCAGGCGACACGCCGAG s panTro1.chrUn_random 236865623 208 - 240967748 ACCACTTGAGCAATAGCTGGTTCTTTGAAAGTCTTGCTGGGG-CAACAG--AGGAAGAGCAGGGGAAGGAGGGGGCTGATGACGAGGACGATGACAGGATTATAAGGAACC-AAGACCGGTGCCGGCAAAACCCCTGCTCCATAAATGTGCAAGG---CAGCATGGGT--AGGAAGCGTCACACACAACCCCGGCCAGAGCCAGGCGACACGCCGAG s mm5.chr11 187646 189 - 121648857 AC------AACAATAGTATGTTCCTTAATCATCTCATG------AATGG--AGTCAGTACAAGATGAGGAGAT---------CTGTGACCCTGGCAGCATTGTAAAGGGCCTGAAGCCAGTACCCACAGAATCTGTGC-CCATAAATGTATATTA----GGCATGGATGAAAAAAATGTCATCAACATTTCTGGCCAGAACCATACAACAAGGCAAG s rn3.chrUn 5824404 190 + 75822765 ---ATCATACTAACAGTATGTCCCCTAAACATCTCATG------GGTGG--AATAAATACAAGACGAGGAGG---CTGAGGCCTGTGA-ACCGACAGCATTATCAAGACCCTGAAGTCAGTGCCCACAGAATCTGTGC-CCATAGATGTCTATGTATTAGGCCTGGATG-AGAAAATGTCACAC-CATTTCTG---------AGTCAACAAAATAGG s danRer1.chrNA 181256307 170 - 390413307 ---TCCAGGGAGAGAGCTGGTTCTCTGGGTAGCTTGCTGGGGTCAAAAGCCCCTAGGTGGGGTGCAAGGGGGCACC------CTGGGGCCTATACTGCAAGTCCAGGGAGA-GAGGT-----------GGACCCCTGG---GTAGCTTGCTGTGG---TAAGGTGGCCCTAGGAAG--------------------AGGGCCAGGGGGCACCCTGGG a score=93035.0 s hg17.chr17_random 432148 520 + 2618010 AAACCCTAACACGACAGTGGCATTGTCGGA---AACTGATTTACTTTGTTCAAAAAAAATGCGATAATCTTGGAAAACTAGCAAAATCCCAAGTGTGACTTGAAGACAAAGCACAGGCACTCCAGGGATCAAACCAAGAAG--------AAACACGGTGAGGGGTTTACATTCTGGAATGCATTGGAAGCAGCCCAGTTTCATCACCTCCGATGGCCAACGGCGGCACAGATGGTCTGCGTGAAGAAACACGAGCCCTGC-TGTCTCGGGCGTCGGT---------GCCTTTGTGGCAGCACTGGCATCTCTCTTTCCTCAAAGTTTAAATTCTGTTTTGATGTCAGCAACACGTCAACA---CTCATATTCTAGG---GAGCAAATTTCTCC--TTCTGCTCCTTATGGCTAATGCAAAAGTAAACGCCAATTTACTTTTGTCTAAATTATTGAAAATTCAAGTGGAATCACATAGGATTCAGATAAATAGGATTTTC-CTGTTTTTGCTGTCGT--------CTTCTTAAAATGGCACATAAGCTTCCCTCCCCCN s panTro1.chrUn_random 236865831 519 - 240967748 AAACCCTAACGCGACAGCGGCATTGTCGGA---AACTGATTTACTTTGTTCAAAAAAAATGCGATAATCTTGGAAAACTAGCAAAATCCCAAGTGTGACTTGAAGACAAAGCACAGGCACTCCAGGGATCAAACCAAGAAG--------AAACACGGTGAGGGGTTTACATTCTGGAATGCATTGGAAGCAGCCCAGTTTCATCACCTCCGATGGCCAACGGCGGCACAGATGGTCTGCGTGAAGAAACACGAGCCCTGC-TGTCTCGGGCGTCGGT---------GCCTTTGTGGCAGCACTGGCATCTCTCTTTCCTCAAAGTTTAAATTCTGTTTTGATGTCAGCAACACGTCAACA---CTCATATTCTAGG---GAGCAAATTTCTCC--CTCTGCTCCTTTTGGCTAATGCAAAAGTAAACGCCAATTTACTTTTGTCTAAATTATTGAAAATTCAAGTGGAATCACATAGGATTCAGATAAATAGGATTTTC-CTGTTTTTGCTGTCGT--------CTTCTTAAAATGTCACATAAGCTTCCCTCCCCC- s mm5.chr11 187835 513 - 121648857 --ATCCAAACATGGCCTTGGTATCACAAGATTCAATTCATCTTCTTAGGAAAACAAAAAGGCAA------TGCAAAGCCGGC--AGTCCCAGGAGTGACTAAAAGAGGAAGCA---ACGCCCCAGCAACCAAGCCATGGAGATGTGTACAGAAGCAGAGAGGAGCCAGTGCCTGGGAAGGTGCTGGAGG-GTACCACTTGTGCTGCCTCCAGAAGAGAATGGCAGCATTAC--ATCTGTGAGAAGAAACCCCAATACAGCTTTTCTTGAGCATCAGCCGTTGCATAGCCTCTACCATGGTAT--GCTTCTGCTTGACAACAAAAACCAAGGTTGGTTCTGATGTCAGTAACA----AACATTTTTCATATTTTTAGCCTGTGCAGCTTCTCTCAGCTCTGCTTCTCATAACTGATACAGAAGACAACTCTGAGCCACTCT--TCTGAAGTGCCACAAATTCAAAGGAGA----GTAAGACCGAGGTCAGAACCACTTTCTCCCTCTTTCCTGCCTTCAGCGTCACTTTCTAAAACAGTGCA----------------- s rn3.chrUn 5824594 479 + 75822765 --ATCCAAACATGGCAGTGGTACCGTAGGATCCAATGTACCTTCTTAGGGGAAAAAAA--GCAG------TGAAAAGCTGGC--AGCCCCGGGAGTGACT--AAGAGAAAACA---AAGCCCCAGCAACTGAACCTCGGAGAAGTTTACAGAAACAGAGGGGAGCCACTGCCTGGGAATGCACCGGAGG-ATACCACTTTTGCTGCCTCCAGGAGAGAA--ACAGCACATCACATCTGCGAGAAGAAACCCAAACACAGTTTTTCTTGAGCATCAAAAGTTGCATAGCCTCTACCATG--GCCTGCTTCTGCTTGGAAACAAAAACTAAGGGTGGTTTTGATGTCAGTAACA----AAAA-TTTTCATATTTTTAGCCTGCACAGCTTCTCCCAGCTCTGCTCCTTATAGCTGATACAGAAGACAACACTGAGCCACTAT--TCTGAATTGTCACAAATTCAAAGGAGA----GTAAGACTGAGGTCAGTGCCATTTTC------------------------------TCAAACAGTGAAG---------------- a score=40358.0 s hg17.chr17_random 432668 300 + 2618010 TCCACTCACCCCGTGACTTCCTTCTGGTCCACACCCTCCCTCAGGGCCCAGCATCTTCTCAGAGGGTGTAGAAACTCGAACTTTCACAAAACACAGAGGCCAGC--CCGGCCCTGTCCT----GAGCCGGTCTCATTATTTCCTGTCTGCGGACAGGCCCAGACCTCAAGGAGACTAC----ACACTGTGAGACTGTCTTTGCCACAGGCT--ACCCTGGCCCAAGGT---------GGAGGAGCAAAGCCACCCCACAGGCCTC--CCAGACATACCCCA-ACCGCAGCTGG------AGGTGAGCGTCTCTCTGCCTGGACCTGCTGT s panTro1.chrUn_random 236866350 300 - 240967748 TCCACTCACCCCGTGACTTCCTTCTGGTCCACACCCTCCCTCAGGGCCCAGCATCTTCTCAGAGGCTGTGGAAACTCGAACTTTCACAAAACACAGAGGCCAGC--CCGGCCCTGTCCT----GAGCCGGTCTCGTTATTTCCTGTCTGCGGACAGGCCCAGACCTCAAGGAGACTAC----ACACTGTGAGACTGTCTTTGCCACAGGCT--ACCCTGGCCCAAGGT---------GGAGGAGCAAAGCCACCCCACAGGCCTC--CCAGACATACCCCA-ACCGCAGCTGG------GAGTGAGCGTCTCTCTGCCGGGACCCGCTGT s mm5.chr11 188348 246 - 121648857 ------------AGGACTTCTTTTT------------------GGACCTTGGACTTTCTTGGAGA-TCCAGAAACTGGAGCCTTC----AACACGGAGGTTTGT--CTGGCCCTGACTT----GAGGAAGTTTCATTATTCCTTTTCTATGGATGGAGCCAGACTTCAAAGAGACCAC---------------CTGT-----CCAGATGCT---CCCTGCTCCAAGATCATTTCACCTGAGGACCCAAGCCATCTTCCAAGGCTT--TCTAGCATGCTCCACAAATTTGCTTA------GGGTAAACTTATCCCTTCC------------ s rn3.chrUn 5825073 247 + 75822765 ------------AGGGCTTCTTTTTGGACCTCAGACTTT------------------CTTAGAGA-TCCAGAAACTGGAGCCTTC----AACACAGAGGTTTGT--CTGGCCCTGACCT----GAGAAAGTTTCATTCTTTCTTTTCTATGGATGGGGCCAGACTTCAAAGAGACCAT----CTGTCAAGATGCTCCCTACTCCA-AGATC--ACGTTAACC---------------TGAGGACTCGAGCCATCCTCCAGGGCTT--TCTAGCATGCTCCACAAACATGCCTA------CGGTGAACTTATCCCTTCC------------ s danRer1.chrNA 137670314 299 - 390413307 TCCTCTCTCCCTGCTCTTGCAGTTTAGTACCCAGCGTGCCCCCTGGCCCTCCAC---CTAAGAGACTATG---ACCCCAGCAAGC----TACCCAAGGGTCCACTTCTCTCCCTGGACTTGCAGTATAGGCCCCAGGGTGCCCCCT----------GGCCCTCCACCTAGGGGCCTCTCACCATATCAAGAAAC--------CCAGGGGTCCACCTCTCTCCCTGGAC--TTTCAGTATAGGACCCAGGGTGCTCCCTGGCCCTCCTCCTAGGAACCCCTG-ACCCCAGCAAGCTACCCAGGGGTGCGCCTCTCTTCCTGGACTTGCAGT a score=0.0 s hg17.chr17_random 432968 9 + 2618010 GCTCATCAA a score=673.0 s hg17.chr17_random 432968 7 + 2618010 GCTCATC s panTro1.chrUn_random 236866650 7 - 240967748 GCTCATC a score=91.0 s hg17.chr17_random 432975 1 + 2618010 A s mm5.chr11 188594 1 - 121648857 A a score=91.0 s hg17.chr17_random 432975 1 + 2618010 A s rn3.chrUn 5825320 1 + 75822765 A a score=546.0 s hg17.chr17_random 432976 1 + 2618010 A s panTro1.chr19_random 54949967 1 - 57627672 A s mm5.chr11 188595 1 - 121648857 A s rn3.chrUn 5825321 1 + 75822765 A a score=10561.0 s hg17.chr17_random 432977 94 + 2618010 ATCGAC-GGCAGCCTGCAC---GGACCACAGGGG-CTTGTGAGTTCC-------TGACGCTGCC----CCGCCAGTTACTTTAGCCAGGGCGTTTGCCCTCCTGTGGAAG s panTro1.chr19_random 54949968 95 - 57627672 ATTGAC-GGCAGCCTGCAC---GGGCCACAGGGGGCTTGTGAGTTCC-------TGACGCTGCC----CCGCCAGTTACTTTAGCCAAGGCGTTTGCCCTCCTGTGGAAG s mm5.chr11 188596 96 - 121648857 ACTGACTAGGAACCTACA--------------GGCTCTGTGAATTCCAGCCTAATGTCATTTTCACCATCAACAATAATGCTGGCCAGGACCATCCTCCTCCCTTGGAAA s rn3.chrUn 5825322 95 + 75822765 ACCGAC-TAGAACCTTCA--------------GGCTCTGTGAATTCCAGCCTGATGTCATTTTTGCCATCAGCAATAATGCTGGCCAGGACGATCATCCTCCCTTGGAAG s danRer1.chrNA 137670613 85 - 390413307 ATAGAC-CACAGGGTGCCCACTGGACCTCCA----CCTAGGGACGCC-------TGACA---------CCAGCAA----GCTACCCAGGGGTCCACCTCTCTTCCTGGAC a score=360.0 s hg17.chr17_random 433071 2 + 2618010 TT s panTro1.chr19_random 54950063 2 - 57627672 TT s mm5.chr11 188692 2 - 121648857 CC s danRer1.chrNA 137670698 2 - 390413307 TT a score=0.0 s hg17.chr17_random 433073 23 + 2618010 CAATGTCTTCATGTAAAACAAAG a score=1588.0 s hg17.chr17_random 433073 16 + 2618010 CAATGTCTTCATGTAA s panTro1.chr19_random 54950065 16 - 57627672 CAACGTCTTTATGTAA s mm5.chr11 188694 16 - 121648857 TAAAGCTCTCTCTTAA a score=655.0 s hg17.chr17_random 433089 7 + 2618010 AACAAAG s panTro1.chr19_random 54950081 7 - 57627672 AACAAAG a score=6571.0 s hg17.chr17_random 433096 46 + 2618010 GCAATTGATACCTCCAGGG----CCCTGGCACTCCAGCTGTCTGTCTCTG s panTro1.chr19_random 54950088 46 - 57627672 GCAACTGATACCTCCAGGG----CCCTGGCACTCCAGCTGTCTGTCTCTG s danRer1.chrNA 137670700 49 - 390413307 GCAGTATAGGCC-CCAGGGTGCCCCCTGGCCCTCCACCTAGGGGCCTCTG a score=23210.0 s hg17.chr17_random 433142 258 + 2618010 GTGACTGGACCTTCTCTGGATAGCTGCACAGGACCTGGTTCTCCGGGCCATCTGGGACCCTCTGTGCTAGGCCCTAACTTCCAGAAGGCTCAGTCACACTTATTCCCCTTCTCACACACGAGCAGTGAGTCTGTGTGCACGTGGGAGAGCTCCGCTGGGTCCTGGTGCTAAGCTCTCTGGTGGGTGCTGCAAGGTTGTCCGAGCTCTCCAGGTCGCCCCTCCAAGGTGGCTGACAAACATAAGTTCTGTCCCAACCAT s panTro1.chr19_random 54950134 257 - 57627672 GTGACCGGACCTTCTCTGGATAGCTGCACAGGACCTGGTTCTCCGGGCCATCTGGGACCCTCTGTGCCAGGCCCTAACTTCCAGAAGGCTCAGTCACAGTTATTCCCCCTCTCACACACGAGCAGTGAGTCTGTGTGCACGTGGGAGAGCTCTGC-GGGCCCTGGTGCTAAGCTCTCTGGTGGGTGCTGCGAGGTTGTCCGAGCTCTCCAGGTCGCCCCTCCAAGGTGGCTGACAAACATAAGTTCTGTCCCAGCCAT a score=4259.0 s hg17.chr17_random 433400 54 + 2618010 GGCTCCTGAGTGCCTGTTGTCTACCCCTCACCCATCCCAGCAAACAGCAGCCAC--- s panTro1.chr19_random 54950391 53 - 57627672 GGCTCCTGAGTGCCTGTTGTCTACCCCTCACCCATCCCAGCAAACAGCA-CCAC--- s danRer1.chrNA 159469357 44 + 390413307 GGCCCCAGAATGC----------CCCCTGGCC--TTCCACCAAGGGGCC-TCTTACC a score=20316.0 s hg17.chr17_random 433454 125 + 2618010 TCAGCAAGCCCTTCCTGGAGGGATCCACATCCTGAAATGGCCCCCCAGTGTGGGAAAAGCCCAGAGCGCCACGCTGACACCCGGAGCCCAGGGCC---GACAGTGGCAGCTTCTGCTGGGGGTCATGT s panTro1.chr19_random 54950444 125 - 57627672 TCAGCAAGCCCTTCCTGGAGGGATCCACATCCTGAAACGGCCCCCCAGTGTGGGAAAAGCCCAGAGCGCCAAGCTGACACCCGGAGCCCAGGGCC---GACAGTGGCAGCTTCTGCTGGGGGTCATGT s canFam1.chrUn 31610554 113 - 91062872 TCAACGGGCCCTTCTTGGAGGAACCCACATCTTGAAACTGCCCC---GGGGCAGGAAAGACCAGAAGGCCATGCTGGC-CCTGGGGCGCAGGGC-----------ACAACCGCCACCGGGAGATATGC s danRer1.chrNA 159469401 116 + 390413307 CTAGCAAGCTACCC----AGGGGTCCACCTCTCAAACTGGACTTCCAGTGTAGG------CCAAAGTGCTGCTTTGCGCTCC--ACCTAAGGGCCTCTGACTCCAGCAAGCTATCAAGGGGACCACCT a score=5881.0 s hg17.chr17_random 433579 30 + 2618010 GGGTCAGGGCACTGCTCCCCACCCTCAGGT s panTro1.chr19_random 54950569 30 - 57627672 GGGCCAGGGCAGTGCTCCCCACCCTCCGGT s canFam1.chrUn 31610667 30 - 91062872 GGGTCAGGGCAGCTCTCCACACCTGCAGGT a score=5190.0 s hg17.chr17_random 433609 31 + 2618010 GATGCCCGAATGCCCTCCAG--GAATGACACAG s panTro1.chr19_random 54950599 31 - 57627672 GATACCCGAATGCCCTCCAG--GAATGACACAG s canFam1.chrUn 31610697 31 - 91062872 GCCCCCCAAGTGTCCCTCCG--GGATGCCAGAG s danRer1.chrNA 159469547 33 + 390413307 GGTGCCCCCTGGCCCTCCAGCTTAAGGCCCCTG a score=6180.0 s hg17.chr17_random 433640 140 + 2618010 AGGTGGCATCTGGGTGGTGGACATACACCCCCAGGTGTGGAATACAGGCCNATCNCCCGCTGTACCCCCCGGGTGTGGAANAGCCAGGCCCATCCCCCCTGCACCCC---CCCAGGCGNGGAAAGC-CAGGCCCATCCC---CCCTG s panTro1.chr19_random 54950630 101 - 57627672 AGGTGGCATCTGGGTGGTGGACATACACCCCCAGGTGTGGAA---------------------------------------AGCCAGGCCCATCCCCCCTGCACCCC---CCCAGGCATGGAAAGC-CAGGCCCATCCC---CCCTG s danRer1.chrNA 159469585 125 + 390413307 AGCAAGCTACCAAGGAGTCCACCTTTCTCCCTGGACTTGCAGTTTAGGC------CCCAGAGTGCCC----------------CCTGGCCCTACACTTATGGGCCTCTGACCCCAGCAAGCTAACCATGGGTCCACCTCTCACCCTG a score=944.0 s hg17.chr17_random 433780 31 + 2618010 CACCCCCCAGGCGTGGAAAGCCAGGCCCATC---- s panTro1.chrUn_random 236867557 31 - 240967748 CACCCCCCAGGCATGGAAAGCCAGGCCCGTT---- s danRer1.chrNA 159469710 25 + 390413307 GACTTTC----------AATATAGGCCCAAGGGTT a score=2757.0 s hg17.chr17_random 433811 16 + 2618010 CCCCCNTGCACCCCCC s panTro1.chrUn_random 236867511 16 - 240967748 CCCCCCTGCACCCCCC s danRer1.chrNA 159469735 16 + 390413307 CCCCTTCACACTCCAC a score=2410.0 s hg17.chr17_random 433827 33 + 2618010 AGGCGTGGAAAGCCAGGCCCATCCNNNNTGCAC s panTro1.chrUn_random 236867527 33 - 240967748 AGGCGTGGAAAGCCAGGCCCATCCCTTTTGCAC a score=3896.0 s hg17.chr17_random 433860 32 + 2618010 CCCCCAGGCGNGGAAANCCAGG--CCCATCCCCC s panTro1.chrUn_random 236867560 32 - 240967748 CCCCCAGGCATGGAAAGCCAGG--CCCGTTCCCC s canFam1.chr1 19707583 34 - 124897793 CCCACAGACCCAGGAGTCCAAGTTCCCAGCCCCT a score=-452.0 s hg17.chr17_random 433892 6 + 2618010 CTGCAC s canFam1.chr1 19707617 3 - 124897793 CC---T a score=3154.0 s hg17.chr17_random 433898 39 + 2618010 CCCCCAGGCGTGGAAAGCCAGG---CCCATCCCCCCTNGCA-C s panTro1.chr19_random 54950657 39 - 57627672 CCCCCAGGTGTGGAAAGCCAGG---CCCATCCCCCCT-GCACC s canFam1.chr1 19707620 37 - 124897793 CCCTCAGACCCAAAAGTCCAGGTTCCCAGCCCCTCCT------ a score=6386.0 s hg17.chr17_random 433937 66 + 2618010 CCCCCAGGCGTGGAAAGCCAGG--CCCATCCCCCCTNGCA-CCCCCCAGGCGTGGAAAGCCAGGCCCAT------- s panTro1.chr19_random 54950657 66 - 57627672 CCCCCAGGTGTGGAAAGCCAGG--CCCATCCCCCCT-GCACCCCCCCAGGCATGGAAAGCCAGGCCCAT------- s canFam1.chr1 19707657 71 - 124897793 CCCTCAGACTGTGGAGTCCAGGCCCCCAGCCCCTCC-----TCCCACAGACCCAGGAGTCCAGGTTCCCAGCCCCT a score=3363.0 s hg17.chr17_random 434003 7 + 2618010 CCCCCCT s panTro1.chr19_random 54950723 7 - 57627672 CCCCCCT s rn3.chr7 71130721 6 - 143082968 -CCCCCT s canFam1.chr1 19707728 7 - 124897793 CCTCCCT a score=-261.0 s hg17.chr17_random 434010 30 + 2618010 NGCACCNCCCAGGCGTGNAAAGCCANGCCC s rn3.chr7 71130728 30 - 143082968 TGCACCCTCCAAGCTCACAGTCCACTGTAT s canFam1.chr1 19707735 21 - 124897793 ---------CAGACCCAGGGGTCCAGGCCC a score=5118.0 s hg17.chr17_random 434040 38 + 2618010 ATNCCCCNTGCNCCCCCCAGGCGTGNAAAGCCAGGCCC s panTro1.chrUn_random 236867509 38 - 240967748 ATCCCCCCTGCACCCCCCAGGCGTGGAAAGCCAGGCCC s rn3.chr7 71130758 38 - 143082968 GCCCCCTGGGCACCCTCCAGGCTCACAGTGCACTGCAT s canFam1.chr1 19707756 38 - 124897793 CTAGGCCCTTCCTCCCTCAGACACAGGGGTCCAGGCCC a score=14050.0 s hg17.chr17_random 434078 76 + 2618010 ---ATCCCCCCTGCACCCCCCAGGCGTGGAAAGCCAGGCCCATCCCCCCTGCACCCCCCAGGCGTGGAAAGCCAGGCCC s panTro1.chrUn_random 236867509 76 - 240967748 ---ATCCCCCCTGCACCCCCCAGGCGTGGAAAGCCAGGCCCATCCCTTTTGCACCCCCCAGGCATGGAAAGCCAGGCCC s rn3.chr7 71130796 76 - 143082968 ---GCCCCCTCTGCACCCTCCAGGCTCACAGTGCACTGCATGCCCCCTGGACACCCTCCAGGCTCACAGTCCACTGCCT s canFam1.chr1 19707794 75 - 124897793 CCAGCCCCTCCT----CCCTCAGACCCAGGAATCCAGGCCCCCAGGCCCCTCCTCCCTCAGACCCAGGAGTCCAGGCCC a score=10464.0 s hg17.chr17_random 434154 60 + 2618010 ----ATCCCCCCTGCATCCCCCAGGCGTGGAAAGCCAGGCCCATCCCCCCTGCACCCCCCAGGC s panTro1.chrUn_random 236867509 60 - 240967748 ----ATCCCCCCTGCACCCCCCAGGCGTGGAAAGCCAGGCCCATCCCTTTTGCACCCCCCAGGC s rn3.chr7 71130872 60 - 143082968 ----GCCCCCTGGGCACCCTCCAGGCTCACAGTCCACTGCATGCCCCCTGGGCACCCTCCAGGC s canFam1.chr1 19707869 59 - 124897793 CCAGGCCCCTCCT----CCCTCAGACCCAGGAGTCCAGGCCCCCAGCCCCT-CCTCCCTCAGAC a score=5369.0 s hg17.chr17_random 434214 45 + 2618010 ATGGAAAGCCAGGCCT---GTTCCCCACCACCAGTGCTCACTCAGGAA s panTro1.chrUn_random 236867569 45 - 240967748 ATGGAAAGCCAGGCCC---GTTCCCCACCACCAGCGCTCACTCAGGAA s canFam1.chr1 19707928 44 - 124897793 ACAAGAGTCCAGGCCTCCAGCCCCTCTTCCCT----CACACCCAGGAA a score=26706.0 s hg17.chr17_random 434259 286 + 2618010 CTGCACACATGAGGATACCCAGCTGCCAGCTGAATCCCTCAGACAGGCCACTCAGGGAGCATCTGCTTGTCTTCAGGGATCTGCAGAGTGAGCATCTGACCCCTCCCTCCAAGAAGGGCAAAGGGTTTCTCTCTGCATGTTGGGGTGATCGAGGAAGGTAAGCTCATCAAGGAGTGAGCAGACCCGCTGGGCCAGGATGTTTGGGGCCCTGGGTGGGTGGCATCTGGTCTTTGAGGGGGAGGCTGCACATGGCTTACCAGAGCTGAACCCTTGTCATCATGGCTGG s panTro1.chrUn_random 236867614 286 - 240967748 CTGCACACATGAGGATACCCAGCTGCCAGCTGAATCCCTCAGACAGGCCACTCAGGGAGCATCTGCTTGTCTTCAGGGATCTGCAGAGTGAGCATCTGACCCCTCCCTCCAAGAAGGGCAAAGGGTTTCTCTCTGCATGTTGGGGTGATCGAGGAAGGTAAGCTCATCAAGGAGTGAGCAGACCCGCTGGGCCAGGATGTTTGGGGCCCCGGGCGGGTGGCATCTGGTCTTTGATGGGGAGGCTGCACATGGCTTAGCAGAGCTGAACCCTTGTCATCGTGGCTGG a score=70058.0 s hg17.chr17_random 434545 773 + 2618010 AGAGTCTCAATCAAACCCAGTGTCTCAGTGTGGCTCAGGGGAGTGAAGATGC----CCTAGTGGAGGTCACCATGACCTACAACCATC--AGACAAGACCAGGGGCCTCCCCAGGTTTCAGGGTT----------TGCAGAGCTTTTCCAACACACAAATGTCTGTAGCTGGAGGCCCCACAGACACCTCGAACTCAAGAGGGCACAAAATTGAGCCCATCGCTGACCCCTCCAATCGGCCCCC----------TCCAGTGACGTGAATGTCAGCCGTCGAGGACTCTTCCGGATCTCCTTCTCCCCGCCTCACACCAACCAACCCCAAGCCAGTCCCACCCCCCAAGTCCTGATTGAACGGGCT-----------------------------------GTTTCCCCCTGGCCCAGCT------CTGGCAAAGCCGC-------CTCTCACGGCGACCA--------GCTCATTCCTCTGTTCAGAGCTCTATGGTGG-----------------------------------------------------------------------TCCTGGGCTCAGGGAGG--------------------CCAGAC--------TTGTCGAGAACCCCTATTTTAATTGCCCCCAAATTTC-----------------CTCTCTAAATACCAGCTCTGGCCCCTCTG-CACATCACCCGTAAGT---CCCAGCCTC------------------ACAGAAACAAGAGGAGTCAAG--------GTTCTGGGTCCACGCAGTGTACTCACGGTGGCGGAGTGCGGGC--GAccgatgcccagggttttgaaaaatgt------------------------gctttgtgtgttttct----------------------------------ctgttgttgttctttcagaggggagtgtaaatctacttctgatccctgtctggggcaga---ggcTGTGGCTCTCGGGTGCATGAACTTCAGCTTGGCCGAGTCCTAGCCGCCAGGTGCTGCCATCCCTGCTGCCCT s panTro1.chrUn_random 236867900 774 - 240967748 AGAGTCTCAATCAAACCCAGTGTCTCCGTGTGGCTCAGGGGAGTGAAGATGCGTGCCCTAGTGGAGGTCACCATGACCTACAACCATC--AGACAAGACCAGGGGCCTCCCCAGGTTTCAGGGTT----------TGCAGAGCTTTTCCAACACACAAATGTCTGTAGCTGGAGGCCCCACAGACACCTCGAACTCAAGAGGGCACAAAATTGAGCCCATCACTGACCCCTCCAATCGGCCCCC----------TCCAGTGACGTGAATGTCAGCCGTCGAGGACTCTTCCCGATCTCCT---CCCCGCCTCACACCAACCAACCCCAAGCCAGTCCCACCCCCCAAGTCCTGACTGAACGGGCT-----------------------------------GCTTCCCCCTGGCCCAGCT------CTGGCAAAGCCGC-------CTCTCACGGCGACCA--------GCTCATTCCTCTGTTCAGAGCCGTGTGGTGG-----------------------------------------------------------------------TCCTGGGCTCGGGGAGG--------------------CCAGAC--------TTGTCAAGAACCCCTATTTTAATTGCCCCCAAATTTC-----------------CACTGTAAATACCAGCTCTGGCCCCTCTG-CACATCACCCGTAAGT---CCCAGCCTC------------------ACAGAAACAAGAGGAGTCAAG--------GTTCTGGGTCCACGCAGCGTACTCACGGTGGCGGAGTGCGGGC--CACCGATGCCCAAGGTTTTGAAAAATGT------------------------GCTTTGTGTGTTTTCT----------------------------------CTGTTGTTGTTCTTTCAGAGGGGAGTGTAAACCTACTTCTGATCCCTGTCTGGGGCAGA---GGCTGTGGCTCTCGGGTGCATGAACTTCAGCTTGGCCGAGTCCTAGCCGCCAGGTGCTGCCATCCCTGCTGCCCT s canFam1.chrUn 84695950 1015 - 91062872 AGCATCCTGACCAAGCCCCCAGTCTCGGGGCGACATGAGGGAAGTAGGA---------CAGTGGA---TAGGAGGACCCACAGCTGTCAGAGACAGCAGTGGGGGCCTCCCTGTGCTCTAGGGTTCCACTGGCCCCAGAGATCTCCCCCACAGCACAAATCTCTCCAGCTGGAGGCC---------CCTCCAGTTCATGATGACAC-AAATGGGATCCATCTCGGTCCCCCGGAAACTGCCCCTCCCACTGCCATCCAGTTACGTGAAGAAGCAACCTGGAGACCGCGGGCAGCCTCTCCTCTCTGCACCCCAGGTGGGTCAGCCCCCAGCCAGGCTCGCCCCAC---TCCCTCTAGAACGTGCTCCCCTCGCCGCGGCGCCCCGGGCCGAGCAGTGAGCGCATCCCCCCACTCCCACTCAGGGACAGGCCAAGCCGCCCACGTGCCTCCACAGAGCTCAGTCGCATGGCCCAGTGCCCTGTCTAGAGGACTCTGGCAGCATCCACACTCCAGAGGCGTCCCTCATCCTGACCCTGCCGTGAGCCCCAGGACAGGCACTCCCTTGCCCTCTCCTGTTCCCGTGGGGGCAGGGCCACCGTGCTCGGTTCCAGACCAAGGCGGTCAGTGCTGGCCTCTGCTGCGGATGCCCCTCGGTCTCACGCCCCAGGCCCAATGCCCTCTCCTCCCCAGAGTCGGCTGCTCTGACATGTTTGCTGCAAATATGCTCAGCTGCTGTGAACACACGTTTCCGACGGACAGAAGCGGTGCCATGCCCTCTGTGCTCTGCGTC--TTCAGCTTCTCCAAGAT-GCTGTGTGCCGCCCGCACGGATGCCCCAGCTGCTGCAACGTGCTCCATCCTGCGAACCTCGGCCTGGGCTTGCTGGACCCTCCTGCCTGGGCTGGGCAGCCACGGGGCTCACCTGCATTGTTGTCCCTCTTTCAGGAGAGGG-GTCAGTCCCGCCCTGCTCCTCACCCTGCAGAAACAGGGCTTTGGCTCCCAG-----------------TGGGTCACTCTGGGTCACCA-GTGCGG-CATCTCCACGGTGG- a score=55500.0 s hg17.chr17_random 435318 374 + 2618010 CACTGCCTCCAGCAGGGTCACACCAGGCAGCGCACACCTGTCTGGCAGGTATGatggatctgtctgctgcttta-----aattcctctga------------------------------------------------------------aaattgcctattaatatcatctgtccattcatccaccggagttcctgtctttttctt--atgaattgg-gggaatttattgtatgttccta--attaatccctaattgggtttagaagtcgtgcatatctcatcccGACCTGTCTTG----GTTACTTTTGTGGCAA------------CATTTTTATATCATCCATGACTAAGGGGGCACCACTG--AAatgaagtgggtgccaccgctgagctccccgtgcagaggaagaaactaaggctcagagatgctgag---------------cgcttg-------ctgcaggtcc----cctggccagtc s panTro1.chrUn_random 236868674 374 - 240967748 CACTGCCTCCAGCAGGATCACACCAGGCAGCGCACACCTGTCTGGCAGGTATGATGGATCTGTCTGCTGCTTTA-----AATTCCGCTGA------------------------------------------------------------AAATTGCCTATTAATATCATCTGTCCAATCATCCACCGGAGTTCCTGTCTTTTTCTT--ATGAATTGG-GGGAATTTATTGTATGTTCCTA--ATTAATCCCTAATTGGGTTTAGAAGTCGCGCATATCTCATCCCGACCTGTCTTG----GTTACTTTTGTGGCAA------------CATTTTTATATCATCCATGACTAAGGGGGCACCACCG--AAatgaagtgggtgccaccgctgagccccccgtgcagaggaagaaactaaggctcagagatgctgag---------------cgcttg-------ctgcaggtcc----cctggccagtc s rn3.chrUn 5825479 393 + 75822765 CGCTGTCTCTAGCAGGTTCCCACCAGACATCATAGCTTCTTCTGGCAGGAACACTGG-TCTTACTGCTATTTTAACTTGAATTTCACTGATAA---------------------------------CCCCACAGATAAGGAACCACATGCACACTGCCTGTTTGTCTCAGTTATACATCTTTCCCTTGAAGTTGCTTTTTTTGTTTTAAATAAATAGA-AGAAATGACTTGTATATCCTAAACATTAA--ATTGATAAGGTTTAGAAGTCAGAAATATCCTG-CCATACTTGCCACGTACAATTAAAGTTGTGAAAAAGGCTTCCATACCATTTTCTTAGTCACAGTGAAT-----------------AAACAAAGTAAATACCTTCGCTAAGCCCAATTTTCAGAAAAATAAACTTGTGTTCAGAGACACTGC------------------------------------TTC----CCTGGACAGTC s canFam1.chrUn 84696965 440 - 91062872 CACAGCCTCC----------CCATGGGCCTCACACATCCGACCTgtgggtgcaaagcatctccctgtcgctctaggttgggtccctctgataaccgccgtgtctgaggatcattcgtggcctttggcccttctgt---------------aaatcgcctattcatatgatgtgcccattt-tctgtt--agtt--tgtctttttctt--ctaggttggaagGAAGCTCTTGTGCATTCACTGTATCAGTCTCTGGCTAGTGTTAGGAGCTGTAGACACCTTGTCCTGATCTGTCCTGCTCAGTTAATTTTGTGGCAA------------CACTTCCACAGtcacc----ctattgggtccccatgagccaataaagtgggcaccacccctaagtccactttgcaaatgaagaaactgagtatcgcagaggccgggtaCGCCCGTCAGGCCCGCTGGTACGCCCCTGCAGGTCCCCGTCCTGGCTTGTC a score=6683.0 s hg17.chr17_random 435692 43 + 2618010 ggggaaggaggtg-ggattcacaccaggccctgtgctctgactt s panTro1.chrUn_random 236869048 43 - 240967748 ggggaaggaggtg-ggattcacaccaggtcctgtgctctgactt s rn3.chrUn 5825872 44 + 75822765 TCGGACAGAGGTGAGAATTGAAGTCAGGCCACACACTCTGACTT a score=17144.0 s hg17.chr17_random 435735 186 + 2618010 tgccagtccctgctctACAAGACTCAATGCCAACACCCAACGGTGAGTCCCGTGAACCCCAGGTGGCCTTCACCCCAGCTCTGTGAGGTGCCCAGAGGGAATAATCGATGGTTGTTGAATCCAAGTTTTTGCATTGTGGAAGAGGTTTTGTTTTCACTGAAATACCCAAAAGGTCAAATGCGGCAA s panTro1.chrUn_random 236869091 186 - 240967748 tgccagtccctgctctACAAGACTCAATGCCAACACCCAATGGTGAGTCCCGTGAACCCCAGGTGGCCTTCACCCCAGCTCTGTGAGGCGCCCAGAGGGGATAATCGATGGTTGTTGAATCCAGGTTTTTGCATTGTGGAAGAGGTTTTGTTTTCACTGAAATACCCGAAAGGTCAAATGCGGCAA a score=81272.0 s hg17.chr17_random 435921 535 + 2618010 AATCACTTAAAACTGGTCTCTTCCACGAG-----------------TAGCTCTTGCGGGAGAAAGGGAAGCTTCTGGATAAACTCAAGCCGCAGGGACTCCTGAGCCAGCTGGAAAGGCAGGCTGTGAG-GAGGACATGGGGCCTGTGCAACCTGCATCCGTGCGTCAGGGCCTCACAGCCAAAACCAGCTTCTGTGTCCTGTTTTCTCCAAAGGTTGGCTCTTGAAAGCAGGGTCACCTCCTGAAAAGCCAGTGTTTTCCACCATGCCAACAAAATGAAATAAAGAGTCTGGCACTGGGGCGGG---------------AGTCACAGGCCACCAGCC----GGGGGGGCTGAGGATGTGGCCCGTGTGTTGTCAGGGAAGGCAGGCGCCAAGC---ACCTGGCACCAGTAGCGCCTTTGTTGGGCGCCTGGGAGATTGTTGTTTAAAACGTTTAAAATAATAATAAAAAGCGAAAGTCCTTCCAAGAGGGAGGAGAAGAAAGCTGCGCCAAGAGGAAGGTGGGAGAACATCAAGCTCATCCATCCTTATCCGTGTAAATAAAAAGAAATGTGAA s panTro1.chrUn_random 236869277 535 - 240967748 AATCACTTAAAACTGGTCTCTTCCACAAG-----------------TAGCTCTTGCGGGAGAAAGGGAAGCTTCTGGATAAACTCAAGCCGCAGGGACTCCTGAGCCAGCTGGAAAGGCAGGCTGTGAG-GAGGACGTGGGGCCTGTGCAACCTGCATCCGTGCATCAGGGCCTCACAGCCAAAACCAGCTTCTGTGTCCTGTTTTCTCCAAAGGTTGGCTCTTGAAAGCAGGGTCACCTCCTGAAAAGCCAGTGTTTTCCACCATGCCAACAAAATGAAATAAAGAGTCTGGCACTGGGGCGGG---------------AGTCACAGGCCACCAGCC----GGGGGGGCTGAGGATGTGGCCCGTGTGTTGTCAGGGAAGGCGGGCGCCAAGC---ACCTGGCACCAGTAGCGCCTTTGTTGGGCGCCTGGGAGATTGTTGTTTAAAACGTTTAAAATAATAATAAAAAGCGAAAGTCCTTCCAAGAGGGAGGAGAAGAAAGCTGCGCCAAGAGGAAGGTGGGAGAACATCAAGCTCATCCATCCTTATCCGTGTAAATAAAAAGAAATGTGAA s canFam1.chrUn 84697874 529 - 91062872 AGTCAGCTCAGACTCAGCACTTTCGCCAGCAGGGGCCAGCTGGGCATGGCTGTCATGGGAGAAGAGAA---CCCTGGGTGAACTTGAGCCTGTGGGGCGCCTGAG-CAGATGGAGCTGCAGGCCGCAAGTGAGGACA------------------CAGCCCTG--TCTGGGCCTCAAAGCCAAAACCAGCTTTCCCGTCCTGTTTTCTGCAAAGGCTGGCTCTTGAAAGTAGGGTCACCTCCCGGAAAGCAAATGTTTTCCACGATGCTGACAAAATGAAATAATGAGTCTGGCACCTGGGCCTGTGCTGTCCCTGGCCTGGTTGCTGGCCGCCGGATCAGGGGGGGGCCTGGGGA----GCCGGGGC--------GGAGCACAGGC-CCAAGAGCGGCCCGGCACCGGCA--GCCGGGCTAACGCACTTGTCAGACTGTTGTTAAAGATGTTT-AAATAGTAATGATAACAGAGGGT-CTTCCAAGAAAGCAAAGAAGGGAGCGGTACTGAGAGGAATCTGGAGAAAC-TCCACCGCGTCCAGCCTTAGCC----AGAGGGAAGGAAACAAGAA a score=127767.0 s hg17.chr17_random 436456 1387 + 2618010 GTGGTCTTTAAGCGACAGAGGAAACTGAGAATAAAAGCACTTCAGAGCTGCCTCACTGTTAGCCTTTCTCCCAGTAAAGCACCTTTCACAGAAAACAAACGGTTTGTCATCAGCTCAGGGAACAGACGGACTGGGCCGCAGCGGCCTCCTCGCAGCTCCCTCGCCTGAGGCCCTCGCAGCTCCCCTGCAGCCAGCACTGAGCCTGCGTCCCTTGAGGGCTGCCACTCTCGCTCCGTGGCCTTCTCTCTCCAGCCCTCAGCCAGGAGAGGCGGCACAGGGAGAGGAGGCAGAAGCCGGAGTTCCTGGCTCTGTCCTTGCTGTCTTTGGCTGCACACAGGTTGCTGATGGTCCTAACACACTTGCCCAACCTGCTCCGTGGAACCCTGAGGCCTGGGGGCCCCCCGGCTGTGACTGCTGTGGGGGGTGACCCGCCACGGGCATCCGTCCTGAGCCCCATGCTGCCCGGCCAGGACCTCCTGCACGGGCTCCGTTTCCCTGAGGCAGGAGCCCTCCTCTCCTCCCTGTTGGCCTCTCCTCACTCCTGGGCCTGGGCACGGAACACAGATTCTGGATCGTCACAGAGAGAAACCGATCTGGAAAGCACCAACTCAAATAGAATCACAGCAGCACGGATGCAGtgtgccaggcgccgttttaaaccctttgaatgtatccactcatgtcatccccaccaaagctctgtgaggcaCGGCCAGGTTCAGGGGCTGGCCCAAGGCCTGCAACCCCAGTCAGTCCCCGGGATCTGTGGCCGGAGTCGCAAAGCTGCAGCGTGTCTGGGCCCAGGTGTGGCCAGTCCTGCCACATAGGCCTGTGGGTTGGCTCCGAGTTTGTCCTCAAGTGGGTAATAAATAGCACCGTGGCCTGAAGGTCCCGAGAGGCACGTCTGGGGCAGGGGGCGAGGGACACAAGGACACCTCTTGGTCAGGTGGCCCAGGGGCACTCAGCACTTGCTCCTCCCTTGTGGCCGGCAGCAGGTGCAGATTTGACC-ATATGCTCCTCACAGCAGCGTCAGGTGCTGGCCAGGCCAGGGGGGCCGGGACCCGGGGGCCCAGGTCCATGGGGATGAGCCATCTCTGCCTGGTGAGGCTCCCCCAGTGATTCAGGGCCATGCTTTCGGAGGGGCCAGAGGACAGCCCggtgctctgagcagctgccgccgagaca-ggactaacctctcgaggatttcatcagggagatgcctgttagtggaatgagcaggagccgggccggcaggaaggacAGAGCCGAGGGCCTCCCCTGGACTCCTAGGTCTTGGCCTTGCGATCAGTCTTGGCTCTGTCCCCACAGAGGAGCTGAGGCTAAAAGGCTGCCAGCTGCCCCAAAAGTGCATCCCGGCACACAAGCG s panTro1.chrUn_random 236869812 1388 - 240967748 GTGGTCTTTAAGCAACAGAGGAAACTGAGAATAAAAGCACTTCAGAGCTGCCTCACTGTTAGCCTTTCTCCCAGTAAAGCACCTTTCACAGAAAACAAACGGTTTGTCATCAGCTCAGGGAACAGACGGACTGGGCCGCAGGGGCCTCCTCGCAGCTCCCTCGCCTGAGGCCCTTGCAGCTCCCCTGCAGCCAGCACTGAGCCTGCGTCCCTTGAGGGCTGCCACTCTCGCTCCGTGGCCTTCTCTCTCCAGCCCTCAGCCAGGAGAGGCGGCACAGGGAGAGGAGGCAGAAGCCGGAGTTCCTGGCTCTGTCCTTGCTGTCTTTGGCTGCACACAGGTTGCTGATGGTCCTAACACACTTGCCCAACCTGCTCCGTGGAACCCTGAGGCCTGGGGGCCCCCCGGCTGCGACTGCTGTGGGGGGTGACCCGCCACGGGCATCCGTCCTGAGCCCCATGCTGCCCGGCCAGGACCTCCTGCACGGGCTCCGTTTCCCTGAGGCAGGAGCCCTCCTCTCCTCCCTGTTGGCCTCTCCTCATTCCTGGGCCTGGGCACGGAACACAGATCCTGGATCGTCACAGAGAGAAA-CGATCTGGAAAGCACCAACTCAAATAGAATCACAGAAACACGGATGAAatgtgccaggcgctgttttaaaccctttgaatgtatccactcacgtcatccccaccaaagctctgtgaggcaCGGCCAGGTTCAGGGGCTGGCCCAAGGCCTGCAACCCCAGTCAGTCCCCGGGATCTGTGGCCGGAGTCACAGAGCTGCAGCGTGTCTGGGCCCAGGTGTGGCCAGTCCTGCCACATAGGCCTGTGGGTTGGCTCTGAGTTTGTCCTCAAGTGGGTAATAAATAGCACCGTGGCCTGAAGGTCCCGAGAGGCACGTCTGGGGCAGGGGGCGAGGGACACAAGGACACCTCTTGGTCAGGTGGCCCAGGGGCACTCAGCACTTGTTCCTCCCTTGTGGCCAGCAGCAGGTGCAGATTTGACCAATATGCTCCTCACAGCAGTGTCAGGTGCTGGCCAGGCCGGGTGGGCCGGGACCCGGGGGCCCAGGTCCATGGGGATGAGCCACCTCTGCCTGGTGAGGCTCCCCAAGTGCTTCAGGGCCATGCTTCCGGAGGGGCCAGAGGATAGCCCGGTGCTCTGAGCAGCTGCCGCCGAGACAGGGACTAACCTCTCGAGGATTTCATCAGGGAGATGCCTGTTAGCGGGATGAGCAGGAGCCGCGCCGGCAGGAAGGACAGGGCCGAGGACCTCCCCTGGACTCCTAGGTCTTGGCCTTGCGATCAGTCTTGGCTCTGTCCCCACAGAGAAGCTGAGGCTAAAAGGCTGCCAGCTGCCCCAAAAGTGCACCCCGGCACACAAGCA a score=9435.0 s hg17.chr17_random 437843 100 + 2618010 GCAAGGAGGGTTGAAGCCAGAGACCTGCAGAGAAAGTGTCCCCGGGCGGCACAGCCCCTCTGTGGAGCCGTGGGCTGCAGGT-TACACAGCCCGGCTCTTG------------- s panTro1.chrUn_random 236871200 100 - 240967748 GCAAGGAGGGTTGAAGCCACAGACCTGCAGAGAAAGTGTCCCCGGGCGGCACAGCCCCTCTGTGGAGCCGTGGGCTGCAGGT-TACACAGCCCGGCTCTTG------------- s rn3.chrUn 5827326 110 + 75822765 GCAAGGAGGGTGTGGACTGGAGCCACTCAAAGAACAT----TGGTACGGCACTACTCAACTCCAATAAGGTGGAGTGTGGGTATGCGCCACATGGCAGTTTTCAAGGGTCCAGA a score=70819.0 s hg17.chr17_random 437943 651 + 2618010 TGTGTGCCACGTACCCCAGAGACGGCT-TGAAACTGGCTGTGCCACCAGCTTGAAGCCACTCGCTGGCTTATGGGGCCTCACCCAGGCCT-----TGCCCCAGGAGGAAGAGGTGGGAGAACGGAAGG------tgccttagctagggcttctc------tagcaaaacacca------agacgatttaataacaacacac-atttatttctcacagttctggagtttggaagctgcagacggt--accagctgagttgggttctggtgagggccctcttcctggcttgcagacagc-------cac---cttctc---actgtgtcatgtggaggaagagaggggcatcccttaggcctcttctgtaagggcagtaaccccgttca-tgagcctccgc--cctcatgaccccatcacctcctaaaggctgcacccccaaatgccatcaccttgagggttgatttcaacacatgaatttggggggacacaggcattcag--tccattgcTTTCCCAGAAAACAAGCTGCAGGGGGACCT-GCTGGGCGCCAGGTGGTCC----TCGACACCAGCCC----GGCTCCAGCAGGCTCTGCAGGCTGCGGAACAGA--------AGCCCACGTCC--------------------------------------CAGGCTCCC------CTGTAGGCAGGTA---------GCGTTGGGCCTCCCTGCTCCGTGTCCACTGTCCATG------------CCTGCAGCCAATTCCTAATGCCC s panTro1.chrUn_random 236871300 651 - 240967748 TGTGTGCCACGTACCCCAGAGACGGCT-TGAAACTGGCTGTGCCACCAGCTTGAAACCACTCGCTGGCTTATGGGGCCTCACCCAGGCCT-----TGCCCCAGGAGGAAGAGGTGGGAGAACGGAAGG------tgccttagctagggcttctc------tagcaaaacacca------agacgatttaataacaacacac-atttatttctcacagttctggagtttggaagctgcagacggt--accagctgagttgggttctggtgaggaccctcttcctggcttgcagacagc-------cac---cttctc---actgtgtcatgtggaggaagagaggggcatcccttaggcctcttctgtaagggcactaaccccgttca-tgagcctccgc--cctcatgaccccatcacctcataaaggctgcacccccaaatgccatcacctggagggttgatttcaacgcatgaatttggggggacacaagcattcag--tccattgcTTTCCCAGAAAACAAGCCGCAGGGGGGCCT-GGTGGGGGCCAGGTGGTCC----TCGACACCAGGAC----AGCTCCAGCAGGCTCTGCAGGCTGCGGAACAGA--------AGCCCATGTCC--------------------------------------CAGGATCCC------CTGTAGGCAGGTA---------GCGTTGGGCCTCCCTGCTCCATGTCCACTGTCCATG------------CCTGCAGCCAATTCCTAATGCCC s mm5.chr11 191458 488 - 121648857 TATGTCTCAAGCATCCCAGATGCAACTCTGAAACTAGCTGTGCCAGGAACTT----CCACTTCTGTGCACA---AACCTTGCCCTGGTCA-----TGTCAGA-AAGGGCCAGGTAAAAAGATAGAAGAGACTCCTGTCTTAGCAGACACATGTCCACTCATAACAAAACAATATCAAC-GAACCACTGATTAAATGCTCATAATTTATTTATCA-AGATCTGCAAGGTGGATGTCTGGGACTATGAACCAATGTGTATGGGTTCTGGAGTGGGCTGCCTTCCTAGCTGATAGGCAGCGTTGTTTCACAGAATTCTA---ACTTGGTCA-----AGGAAGCAACAGAATGCTCTGAGGCTTCTTC-ACAAGGACACTAATTCCACTTG-TGAGGCCCTAA--CCTTCTTATC------------AGAAGCT----------------------------------------------------------CTGGGATTCAGCATGCTTTGCTTTGCTA--------------------------TGGG-----------------------------------------GAATGCCCTTCAAATGGCAG------------------------------------------------------------------------------CTGTAGAGGACAA---------GCGT---------CTGCT------------------------------TCTGTGGTTAATTTCTGATGTCC s rn3.chrUn 5827436 686 + 75822765 TCTGCCTCAAGCATCCCAGATGCAGCTCTAAAACCGGCTGTGCCAGGAACTC----CCACTTCTGTACGCA--------AACCTTGCCCTGGACATGTCAGA-AAGGGCCAGGGCAAAGGATGGAGAAGACTCCTGTCTTATCAGACTCACGTCCAGTCATAACAAAATATTATCAGCTGAACCATTGA-CAAATGCTAATAATTTATTTATCA-AGCTCTGCAAGGTGTATGTCTGGGGCTATGAACCAATGCGTGTGGGTTCTGGAGTGAGCCGCCTTTTTAGCTTATAGGAGGTGCCATTTCAC---AGTATCCTAATTTGGTCA-----AGGAAGCAAGGGAATTCTCTGGAGCCTCTTC-ACAAGGACACTAATTCCACTCATTGAGCCCCTACTACCTTACTATC------------AAAAGCT---------------------------CTGTGATTCAACATATGAATT----------------TCCAA-------------CCTAGAGAACAAGTCGGAGGCAGGCTTAGTTGAAGACTAGAGGATGCTAATTCTACCCAAGCCCTGAAAACTTCAAGGAATTTCATACACTACAGGACTAACTGAGCTTGGCCTACAGCCAGGAGAGTTGATCATGGCTTTTCACATATGGAGTAGGATGGGGTTCCTTTGCACTGCTGAGAGGTATGCTTTGCTGCTGTGAGCATGCCTTGTAAACGGCAGCTGTCGAGGACAAGCATCTGCTTCACAGTTAATTTCTGATGTCC a score=41332.0 s hg17.chr17_random 438594 201 + 2618010 GGGGCTCAGCTGAGGCACATCTTCCTGAGTCAGTACCCCCAGAGCTGGCTTCC---AATGCCCCACCCGTGTAGGCCAATTCTGCATTGTCTCTGGGAGGGGTCTTTACCACTTCCCTCCTGCATCCAAGCCCACCTCACCTGGGAGGGGCCTGCTCCTGTGCGGGACATTGATGGATGCAAAAAAAGAAAATGGTTTTGGGGG s panTro1.chrUn_random 236871951 201 - 240967748 AGGGCTCAGCTGAGGCACATCTTCCTGAGTCAGTACCCCCAGAGCTGGCTTCC---AATGCCCCACCCGTGTAGGCCAATTCTGCATTGTCTCTGGGAGGGGTCTTTACCACTTTCCTCCTGCATCCAAGCCCACCTCACCTGGGAGGGGCCTGCTCCTGTGCGGGACATTGATGGATGCAAAAAAAGAAAATGGTTTTGGGGG s mm5.chr11 191946 186 - 121648857 AAGTGCCCCATGAAACCCATTTTCCTGAAGCGACACTCCTATAGCTGGCTTTC---AGAGCCTCGCCTGGCTCTGATAGTCTTACAATGTCTCTGACATAGATC-TTGCTGCTTCCTTTCCGCAT-CATAAACATCACATCTAGACAGGCCCTGC-CCTGCATGGTACAT------------AGAAAGAAAATGGTTTTCTGGG s rn3.chrUn 5828122 171 + 75822765 AAGTCCCCCGTGAAAACCATATTCCTAA--------------AGCTGGCTT-C---AGAGCCCAAGCCATCTCTGCCAATCTTACAGTGTCTCTGATATAGATC-TTGCTGCTTCCTTCCTGCAT-CATAAACATCACATCTAGAAAGGGCCTGC-CCTCCATGGTACAT------------AGAAAGAAATTGGTTTTCTGGG s canFam1.chrUn 84699638 160 - 91062872 GAGGCCCACCTGGAGCG-GCCCACCTGGAGAGGCCCCCCTGGAGCAGCCCACCTGGAGAGGCCCACCTGGAGAGGCC------------CCCCCTGGAGAGGCC------------CCCCTGGAG-------TGGCCCACCT------GGCCAGCTCCCACCGCAGACACCGAGGC------ACACAGAGCAGCTTCCTCGGGG a score=29695.0 s hg17.chr17_random 438795 336 + 2618010 TCTGAGGGGCTGAGGAAGCCCACCAAGCTGCTGGACA-CGGCACCCGAGCACCT------------GCT------GGGCGATGTCGGAATTCTCTCT-----ACACAACATGGA------CCTGACATCACCCTCTCTGCAGCTCCTGCAGCCAAAGCACAGACATGCACACCAGCCTGCTTGTGCCAGGGAACCTCGTCGGCATGGGGAGGCTGCACCCTGGAGGGGCAGGCTGGGGAAAGGGCATGGAAGGTGGGCAGAGATCGGGCCTGAAGACC--CCGTTTTCCCGGACATCCCAATCTCCAGTGTCCTTGGAT-GTCCCCACCTCTCAGAAACTTGATTTCTGAAGATGAACTCACAGAACTC s panTro1.chrUn_random 236872152 336 - 240967748 TCTGAGGGGCTGAGGAAGCCCACCAAGCTGCTGTACA-TGGCACCCGAGCACCT------------GCT------GGGCGATGTCGGAATTCTCTAT-----ACACAACATGGA------CCCGACATCACCCTCTCTGCAGCTCCTGCAGCCAAAGCACAGACATGCACACCAGCCTGCTTGTGCCAGGGAACCCCGTCGGCATGGGGAGGCTGCGCCCTGGAGGGGCAGGCTGGGGAAAGGGCATGGAAGGTGGGCAGAGGTCGTGCCTGAAGACC--CCGTTTTCCCGGCCATCCCAATCTCCAGGGTCCTTGGGT-GTCCCCACCTCTCAGAAACTTGATTTCTGAAGATGAACTCACAGAGCTC s rn3.chrUn 5828293 336 + 75822765 GCTCAGGGGCTGAGGAGCACCCCAACACTGCTGGACAGAAGCACCTGAGAACCTAGCATAGAAACAGCTCCCTAAGGGCACCACAGGAGTTCCCATTAAAACACAAAACAAGAGGTTATCTCTAACACAGTCTCTTATCCTGTGCTGATAGCCAGAACATACCC---CACAGTAGCT-----------GGGAACCCTAT-AACATAAGGAGGCTGTTCTTTGA-----------GAGCAAGAGGTATAAAATGCAGGCCTTGTTAATACCTGAAAACCCACCAACTT----GACCTCCCAGACTTCAGGAGAATC-TAT-GTCCCCATCGCTCAG-GATTCGGGTTCTGGAGGTGAGCACACACAGCTG s canFam1.chrUn 84699798 203 - 91062872 CCAGTGGGCCTGAGCAGGCCAGTCC--CCTCTGGACG-CA-CACCCGAGCACCT------------GCC------GAGG-----------------------AC----------------GCAGACATCACC-----TGGAGCTCCTGCTGC------------------------------------GGGG---------------------------CCGAAGGGGGAGGCTGG----------TTGAGGATGGACCCACTTC-----------CC--TCACTTT-------GCTCCAGGCTCCTGGGACCCTGGACAGGCCCCTGCCCTCAGGA-----GGCTCTGAAGCTGAGCTCAC--AGCTG a score=5080.0 s hg17.chr17_random 439131 88 + 2618010 TTTTGGGCTGAAAGANNNANTNNNNNNNNNNGNNNNNNTNNAATCTGCC------CTGCCTGTTGCTTATGGNAGAAGGGGTAACCCTTCTTCA s panTro1.chrUn_random 236872488 88 - 240967748 TTTTGGGCTGAAAGAAACAACGCTAGAAAATGCGTTTGTAAAATCTGCC------CTGCCTGTTGCTTATGGCAGAAGGGGTACCCCTTCTTCA s canFam1.chrUn 84700001 83 - 91062872 TTCGCGGCTGGAAGAGACAATGCTGGGACAT---------CATCCTGCAAGTCCGTTGGCTGCTGTTTGCTGCCGAAGGGG--ACCCCTCCTCA a score=0.0 s hg17.chr17_random 439219 15 + 2618010 TGTCCCATTCAGGAG a score=955.0 s hg17.chr17_random 439219 10 + 2618010 TGTCCCATTC s panTro1.chrUn_random 236872576 10 - 240967748 TGTCCCATTC a score=1446.0 s hg17.chr17_random 439229 5 + 2618010 AGGAG s panTro1.chrUn_random 236872586 5 - 240967748 AGGAG s mm5.chr11 195533 5 - 121648857 AGGAG a score=-338.0 s hg17.chr17_random 439234 44 + 2618010 CCCCACCCTG---GTGCCCCAG-----CCTCCGCTGCTGCTGCTGCTGTTGG s panTro1.chrUn_random 236872591 38 - 240967748 CCCCACCCTG---GTGCCCCAG-----CCTCC------GCTGCTGCTGTTGG s mm5.chr11 195538 32 - 121648857 ACTC-CATTG---ATGTGCCAG-----CCATC------TCTGTAGAT----- s canFam1.chrUn 84700084 32 - 91062872 -----CCCTGTCTTTACCCCGGGCAGTCCTGC------TCTGT--------- a score=14540.0 s hg17.chr17_random 439278 45 + 2618010 TAACCGTGCACAGACCTAAAtgggctcgggaaacctgtccccatt s panTro1.chrUn_random 236872629 45 - 240967748 TAACCGTGCACAGACCTAAAtgggctcgggaaacctgtccccatt s mm5.chr11 195570 37 - 121648857 TAGCTGCATGCAAACCTAAAAGGTCTTGGAAGG--------AATT s rn3.chrUn 5834038 44 + 75822765 TAGCTGCGTACAAACCTAAAAGACCTTGGAAGG-CTGTTCCAGTT s canFam1.chrUn 84700116 42 - 91062872 CAGCCACGCACACAC---AGCATGCTGGGAAAACCTGTCCCACTT a score=71402.0 s hg17.chr17_random 439323 594 + 2618010 catctcacacatttctgacttggaccaaacccaaatttcatttggt-caatgcccttctcacctcctccagcccc----------------gtgtcaagaaatgaagcctgactgtttctgaatcatttgcgcttaaatcccccaaaAGAAGAGCGCTAAGTG-GTTTCATCCCCAGAGAGACCTTGCCCAGCCTTTTCTCTGAGTGACAGGACATTCCCATCTGCTAAGATATATTAAACCCCAGCTTCTAGAAAGGCTGGAGTAGGATCTGAGGTGTTCCAAAGGCCTGAGCTTCCAA--CAT--GGTCTGAGCATCCGGAATCTATGGTGCTCCCTCAAGGGGAGGCTGGGTGAGCTTGGACAGGGCCACACACTAGGCCCCAGGGGAAAACCGCTCCCCCCC----NATGGTAG----AGAGCTATGTGAAACCCTCCCTCTATCTCTCGGTGGT------CAAGTGTATGTGAACTTGTCCTCTTCCAAAACTTCATTTGTCAATTCATAAACATGCCCTGAACTGAGACACAAACATGCCCTGAGCTTGGGCAGC------------GCCGGAGACACTCAGCACTCGGGAGGTTACGATCTCTGAC-CTGAGTGCTGGCTC---TCACGGAGGGTCAGG s panTro1.chrUn_random 236872674 592 - 240967748 catttcacacatttctgacttggaccaaacccaaatttcatttggt-caacgcccttctcacctcctccaggccc----------------acgtcaagaaatgaagcctgagtgtttctgaatcatttgcgcttaaatcacccaaaagaagagcgctaagcg-gtttcatccccagagaggccttgcccagccttttCTCTGAGTGACGGGACATTCCCATCTGCTAAGATATATTAAACCCCAGCTTCTAGGAAGGCTAGAGTAGGATCTGAGGTGTTCCAAAGGCCTGAGCTTCCAA--CAT--GGTCTGAGCATCCGGAATCTATGGTGCTCCCTCAAGGGGAGGCTGGGTGAGCTTGGACAGGGCCACACACTAGGCCCCAGGGGAAAACCGCTCCCCCC------ATGGTAG----AGGGCTGAATCAAACCTTCCCTCTATCTCTTGGTGCT------CAAGTGTATGTGAACTTGTCCTCTTCTGAAACTTCATTTGTCAATTCATAAACATGCCCTGAACTGAGACACAAACATGCCCTGAGCTTGGGCGGC------------GCCGGGGACACTCAGCACTCGGGAGGTTACGATCTCTGAC-CCGAGTGCTGGCTC---TCACGGAGGGTCAGG s mm5.chr11 195607 515 - 121648857 TAGCTCACCTATTCCTGACTCCAGTCAAATTCAGATTGTGTGTGCTGAAATGTCCTGTTTACCTCTT---------------------------TAAAAACACAAAACTCACATGACTCTGAGTCATTT-CCCATGACTCCCCT---AGAGCTGCCATTGGTGAGTTTCCTCACCAATGTAGCTTAGCTC------CTCTCTAAACCATAGAA-GTTTCTTTTTG-TGCCATGCACAGAACCTCAGGCTTGAGA---GTTCAAGTAGGGTCAGAAGCATACT-AGGTCCCAAGTTTCTGC-TCAT-CGATGTGGGCATCAAGAACCCATGAAAGTTGCT---GGACCAGCACAGTGATTGGGATCAGGGCTCCACGCTGGCTCACAGGG--AAGCTGCTCCTTCACTGAGCACAGTAATCACAGGGTTA------------CCTCTGCTGCTAGGCA--------CAAG-----GTGAA-TTGTCTCCCTCCTAGACTCCACTAATCA------------------------------------CACTGAGCAT-------------------TCTGGGAACACTTTTTGCTCAAGATGGTCCACACCCTGGCTCCAAGTACCCACTCAGAGCACTGTAGATCAGG s rn3.chrUn 5834082 497 + 75822765 TAGCTTACTGATTCCTGACTCCTTTCAAGTCCAGGTTGTGTGTGCCGAAATGCCCTCTTTACCTCTT---------------------------TGAAAACACAAAAC---------TCTGAGTCATCA-CCCATGA--CCTCT---AGAGCTGCCATC--TG-GTTTCCTCACCAATCTAGCTTAGCCC------CTCTCTGAACCATAGAA-GTTCCTGTTTG-TGCCATGCACTGAACCGCAGGCTTGAGAA--GTTCAAGTAGGGTCAGAAGTATAGT-AGGTCCTAAGTTTACTG-TCAT-GCATGTGGGCATCAAGAACCCATGAAATTTGCT---GGACCAGCATAGTGACTGGGATAAGGGCCCCACA-TGGCTCACGGGG--AAGCTGCTCCTTCATTGAACATAGTAATCA-CAGGGTTA-----------CCTCTTCTGCCAGGCA--------CAAG-----GTGAA-TGGTCTCCCTTCCAGACTCCATTAATCA------------------------------------CACTGAGCAT-------------------GCTGGGAACACTTTTTGCTCAAGATGGTTCACACCCTGGCTCCAAGTATCCAGT----TTACTGTAGATCGGG s canFam1.chrUn 84700312 532 - 91062872 cATCACTCACATTTTTGACTTGGGCCAAATCCAAATTTC-TTTAAC-CAAAACCCTCCTCACCTTCTCCAGCCCCCGTGTCAACCCACGTGCTTCCAAGAGACGAAACCCACACGTTTCTGAATCA----TGCCTGAGTCAGCC-GGGGAGGAGCACC---TG---------CCCAA-------------------CCCCCCGAA--ACGGGAAGTTGTCAGTGGCCAGGAGACACCCAGC--CAGCTTCTGCGGGAGCTCCGGGCGGAGTCGAGATGATGA-AGGCCCACAGCTTGAAAGTCAAGGGGCCTGGGTGTGCAGAACCCATGG-GCTCAGTCGGGGGCCG--TGGGCAGCCTGGGGCGGGGCC---CGCTGGGCATCCAGG---------------------------------AGGGTCCTGACAAGCCCTCCCTGTGCCTGCCTGTGCCTCCACGTGAG-----GTGCT-CTGGCCTGTGTCCAGGCGGCATCCGCTGATTC----------------CCCAGACACGCGCGGGC-CGAAGCGGAGGCAGCGGCGCGGCCAGAGCTGGG--CACGGGGTGGCCAGGAACTGCCTGAGGGTGAC-CGAGGGGCTCC------CCGGGGAGGGCCCGG a score=36965.0 s hg17.chr17_random 439917 268 + 2618010 CATCACAGTGGGCACTGAGACTGGACAGCCACAAGGAATTCTGGGCAAACAAGAGCCCCC--CAGCTAACCCCTCTGGACTCCAGGCAAGCAGGATGACATCACAGCTGAAACCCAAGACCCAGAGGGGAGAGAGCTGGGGTGGGGGCAGGA-CCAGCGGTCTCAGACCCAGGGAGGACTGTGTGCAGCTCAGCACGCTCCGAACATGGGGATGGGGGACAAGGGGTCCCCTCCTGTCTGAGATGGGCTACCTGAGGGTGACTGTGAGGAA s panTro1.chrUn_random 236873266 270 - 240967748 CATCACAGTGGGCACTGAGACTAGACAGCCACAAGGAATTCTGGGCAAACAAGAGCCCCCCGCAGCTAACCCCTCTGGACTCCAGGCAAGCAGGATGACATCACAGCTGAAACCCAAGACCCAGAGGGGAGAGAGCTGGGGTGGGGGCAGGA-CCAGCGGTCTCAGACCCAGGGAGGACTCTGTGCAGCTCAGCACACTCCGAACATGGGGATGGGGGACAAGGGGTCCCCTCCTGTCTGAGATGGGCTGCCTGAGGGTGACTGTGAGGAA s mm5.chr11 196122 221 - 121648857 CCTCTCAATGGGTATCAAAGCTGGGGAGCTCCAAGG-CTTCTGGAAAAACAGCAGCTCTC------TGACCC--TAAGACTGTA-GTAGGCAAGGCGAGAC-------------------------------AAATTGGGGAGTGGAGAGGACCCAGATGGCTCAGGTCTAGACATAACTCTGTAGAACTCAGCA-------ATGCTGGGGTTGAGCAGCTACCATGTCCCTCCCCTACAAAA-AGATCACTTAAAGATGGTTG-GATGTG s rn3.chrUn 5834579 185 + 75822765 CCTCTCGATGGGTAGCAAAGCTGGGGAGCCCCAAGG-CTTCTGGAAAAAC---AGCTCTC------CAGACC--TAAGACTGCA-GTAGGCAAGGTGAGACCC-------------------------------ATAAGGGAGTGGAGAGGATGCAGATGGCTCAGGCCCAGGCATAACTGTGTACAACCCAGGT-------ACTATG-------------------TCCCTCCCCTACAGAA------------AGGTCACTG----GAA a score=14488.0 s hg17.chr17_random 440185 161 + 2618010 GGGNCCAGGTCCAGCACCGTTTCAGCCCCTCAGGTCCCACGGAAGCCCAGTGT--------------TCTGGCA-CCAGGAG--------------------ACTCCGAGCACAACCTGG--GGCTCAGTTCTATCACTCGCGGCCCAGCCTG--------CTCCAC--ACCACTACCCCTCTG--------AAAAATCTGTTCTGTCTTCATTTC s panTro1.chrUn_random 236873536 161 - 240967748 GGGTCCAGGTCCAGCACCGTTTCAGCCCCTCAGGTCCCACGGAAGCCCAGTGT--------------TCTGGCA-CCAGGAG--------------------ACTCCGAGCACAACCTGG--GGCTCAGTTCTATCACTCGCGGCCCAGCCTG--------CTCCAC--ACCACGACCCCTCTG--------AAAAATCTGTTCTGTCTTTATTTC s mm5.chr11 196343 141 - 121648857 TGGCCTAG------------------TCTTAAGGGAACATTTTTGTCTAATGT--------------CTCAGCATCTAGGTA--------------------TCTCAGAACACAGTCTGGTTACCTCAGTCC--TCACTT---------------------CTCCACAAACTACTTTCTCTTTAAAACAAACAAAAAACTATTCTAATTTCATTTT s rn3.chrUn 5834764 141 + 75822765 GATGCTGG------------------TCTTAGGGGAACATTTTAGTCTAATGT--------------CCCAGCATCTAGGAG--------------------GCTTAGAACACAGTCTGGCTACCTCAGTCC--TCACTT---------------------CTCTACAAACTATGTTCTCTTTAAAACAAAGGAAAAACTCTTCTAATTTCATTTC s canFam1.chrUn 84701181 194 - 91062872 GGGCCCGGCTCCCCCACCCGCCCC--ACTCAGGGGCCCTGAGCAGCCCCGTCTTCCTCACCTGCGCCCCTGACG-CCAGGAGCACAGCGAACCCGCAGAGTTACTCCTCACGTGACGAGG--AGCAGCGACCTGCCGGCTGTGGGCCCGCGTGGGGCGGGACGGGACCGTCCACACCTGCTCAG-----------------GTCTGTCCACGTTTC a score=59448.0 s hg17.chr17_random 440346 259 + 2618010 ACTCAGCGTCTGCATGCTGTGTCACCACATTTGGAATTATGCAAACTATTGTTATAAATAAATCACAGGCATCAAAAAGGGACCAAGCAGAAAATGAGCCAAACTCTGGAGCCTGCCGAGTCGCTC----GTGTGCCCTGCGGTGCT-GACACGGATCCCACCTAGACCTGTCTGTGCTCTCA----GGCCCTGGTGCACGTTGCCCTCTGGGCAGGGGCATGGGAGGAGCAGCTGGACTCAGCCTCCAGAGCAAGGA-----------GGGGCGAGAA s panTro1.chrUn_random 236873697 259 - 240967748 ACTCAGCGTCTGCATGTTGTGTCACCACATTTGGAATTATGCAAACTATTGTTATAAATAAATCACAGGCATCAAAAAGGGACCAAGCAGAAAATGAGCCAAACTCTGGAGCCTGCCGAGTCGCTC----GTGTGCCCTGGGGAGCT-GACACGGATCCCACCTAGACCTGTCTGTGCTCTCA----GGCCCTGGTGCACGTTGCCCTCCGGGCAGGGGCATGGGAGGAGCAGCTGGACTCAGCCTCCAGAGCAAGGA-----------GGGGCGAGAA s mm5.chr11 196484 235 - 121648857 ACAAAGAATCTATGGGCCATATCAACCCATTTGCAATGATGAAAATTAATCTTATGAATAAACATCATACAT----------------------TGAGGCAAGTTTTGGTG-CTACCCAGTCACCCATGTGTGTGGCCCTCAGAGCTAGAGAGGGATCCCACCTGGACTTATCTATGCTCTCATATTGGCT---GAGCA-----TCTTCCAAG-AGGGTCAT-GGAGGGACAGATGAACTCAGCCTCTAGAGCAAGAG-----------GTAGGAAGAT s rn3.chrUn 5834905 231 + 75822765 ACAAAGAATCGACAGGCTGTGTCAACCCATTTGGAATGATGAATAAGTGTGTTATAC-------------------------------------TGAGGTAAGTTTTGGTG-CTGCCCAGTCACTCACGTGTGTGGCCCTCAGAGCTAGCGAGGGATCCCACCTGGACTTATCTATGCTCTCATCTCAGGT---AGGCA-----CCTTCCAAG-AGGGTCAT-GGAGGGGCAGATGAACTCAGCCTCTAGAGCAAGAAATAGGAAGATGGGAGAAGGAA a score=17157.0 s hg17.chr17_random 440605 47 + 2618010 GGAGA--------------------AAGGGGCCTCCTTTCAGAAATCTCTCCTCTTACCAGATGCTA s panTro1.chrUn_random 236873956 46 - 240967748 GGAGA--------------------AAGGGGCCTCCTTTCAGAAATCTCTCCTC-TACCAGATGCTA s mm5.chr11 196719 67 - 121648857 GGAGAAAAGAAAGACAAGGTGGTGGAAAGGGCCTTTATTAAGTAATCGCTCCCTTTGCCAGCTGCTA s rn3.chrUn 5835136 56 + 75822765 AGACA-----------AGGAGGTGGGAGGGGCCCTCATTAGATAATCTCTCCCTTTACCAGCTGCCG s canFam1.chrUn 84701683 47 - 91062872 TGATA--------------------AAAGGGTCTTGATTCAGAAGTGTCCCCTCTCACCAGTTGGTA a score=23497.0 s hg17.chr17_random 440652 196 + 2618010 TTTCACCACTAGAGATTCATTCCTTTGGCTTAGATTGTGTCTCT-GCATCTTCTATTAAATGCAGGCATCTGGCTGAGGAG----------------------GGCGCCAGCCTCTCTGTGGGCTTTGTTTGGG---TGCCACGCCG-TGGGCAGGGAAGCCAAGTGCAGAGACAGAAGTGGCCCAGGGGGTGGGAGGATGCCCAGTGGTCAGTGTGACCAGG s mm5.chr11 196786 217 - 121648857 CCTTGCCACTAGAAGTTCGTTGCTTTAACTTGCAGTGGGTCCCTAGTATTTTCTATTCTGTAACGGTGTCTGTTTGAGGAGATCAGCACTGTGTTA----CCAAGCACAAGTCACTCTATGGACTTTGTTTGGGCAATAACAAACCT-TGGAGAAGG-AGTCAAGTGCTGTGACAGCAGTGTCCTACCAAGTGAGAGGGTGTCCAACATTAAATGCAGCAGCT s rn3.chrUn 5835192 213 + 75822765 CCTCAGCACTACAAGTTCTTCGCTTTAGCTTTCAGTGTGTCACTAGCATTTCCTATCCTGTAAAGGTGTCTGGATGAGGAGAGCACCACTG----AGTTGTCAAGCACGAGTCACTCTATGGAC----TTTGGGCAAGAACATGCCT-TGGAAATGG-ATCCACGTACTGTGGCAGCAGTGTCCTATCAAGGGAGAGGGTGTCCAGCATTAAATGCAGCTGGG s canFam1.chrUn 84701730 187 - 91062872 TTTCACCATTAGATATGCATTCCTTT-GCCTGAATTACGTCACTCAGACTTCCTATGACATTCAGGTATCCGGACGCAGAG----------------------GGCACCAG------TGCATAC-----CCGAGCACCAGCCCCCCTGTGGGCCGGGGAGCCATGGGCGGAGACAG-AGCAGTGCGGTGGGTGGGAGGAAGCCCCAGGCTCAGTGCAGAAAC- a score=-198.0 s hg17.chr17_random 440848 100 + 2618010 --GTGA-----GCACCAGC-GACATCTCTGAGGC--CAACAGAGACACCCCCGCCAGGTAGGAGAGAGG-------------------CACGAACAGAGAGGCAGGCAGAGCTG-ANGCAACCCGTGCAG s mm5.chr11 197003 103 - 121648857 --GAGAAAGTGGTAAAAGCAGACATTGATAAGATAACACTGGGGGCACTCCCA------GAGAGTAAGG-------------------CACTAGAAAGGGGGCTGAGAGAACCATAGTCAGCCCTGGCAG s canFam1.chrUn 84701917 116 - 91062872 GTGAGA-----GGAGGAGC---CGTGCTGAAGGC--CAGCGGAG-CACCCCCG--AGGTGAAAGAGAGGTTTGCATCAGTGGTGCCCCCGCTGCAGGGAAGATGGGCAGGGGTG-AAGGGCCCCGTGCAC a score=138.0 s hg17.chr17_random 440948 4 + 2618010 CCAG s canFam1.chrUn 84702033 4 - 91062872 CTGG a score=1476.0 s hg17.chr17_random 443100 213 + 2618010 GTCTTCCTACCAAA-CTCCTTCTTTCCCTCCCCGTGGACCTTCGTGTGATGCTCTGTGTTGTTTCTTCAATGAGGCCTGTTCCTCGGCGCAGCCCCCTTCAAAGCTGTCGGTCTGCCGGCCT--CTGCGGTCGAGGCTGAGCCGCTGTTCTCGCCAGGACAGACGTGGTGGGTGTGCAGCTCTGGGCGTCCGAGCTCCCTTCTGGGCCGGCAGTGA s canFam1.chrUn 6352044 183 + 91062872 GTCTTCCTGCAAAGGCTGCTTCTTTCAGGCCCTGGTAAc--gcgggcgccgccccccgc-----cccccgTGGGCCGTGCTCCCGGGAGCAGCCCCCTGCTT-GCTGCCG-TCCCTGGGCCCGGCTGAGGCCGCGGGTGGGCTGCTCCTCC---------------------TGGGCCACCCCAGTC--CCGCCCGGCCTGCTGCGCGGGC-GCGA a score=-885.0 s hg17.chr17_random 443313 55 + 2618010 AGGAAGTCGCCACAGCACACTGTTGAACTTCACACA-------CCAAGACAGCAGCCCCGA--------G s mm5.chr11 121431801 61 + 121648857 AGGAAGTCATCATA---TGTCGTTGACTTCCACACA------ACCAAGTCAAACACCTAGATTGTTAGGA s canFam1.chrUn 6352227 59 + 91062872 --GAGCACGTCCCAGGGGGCTGCTGACC-CCGCACGGCCTGGGCTGGGCTGAGGGCTCCGT--------G a score=0.0 s hg17.chr17_random 443368 4 + 2618010 GCGC a score=-187.0 s hg17.chr17_random 443368 3 + 2618010 GCG s mm5.chr11 121431862 3 + 121648857 AGA a score=300.0 s hg17.chr17_random 443371 1 + 2618010 C s mm5.chr11 121431865 1 + 121648857 C s rn3.chrUn 69969290 1 - 75822765 C a score=5191.0 s hg17.chr17_random 443372 47 + 2618010 TCACCCAGCCCACA-GGGCGAGGAG-GGAAAATACAACGGGAACAATC--A s mm5.chr11 121431866 50 + 121648857 TCACTCAGACTCAA-GGGAAAGAGGAGGAAAACACCACAGGAAAAGTAGAA s rn3.chrUn 69969291 50 - 75822765 TCACCCAGACTCAA-GGGGAAGAGGAGGAAAACACCAGAGGAAAAGTCTAG s canFam1.chrUn 6352286 49 + 91062872 TCATCCAAGCTACGCTGCGGAGAAGAGAAGAAGCAAGTGAGAAAAGTGA-- a score=97285.0 s hg17.chr17_random 443419 485 + 2618010 ----TGTGCAGTGTTTCTGGAATCTGAAAGCCGTTGGCTTAAGACACAGGCTTCC-GTGTGCAAAAGTTGAGCTG-TGTATTTTCATGAGACCAAAGACACATCGACGTCGTC-----AGGCATCGGGGGCTCCCTGCAGCTCAGTGTGAGGTTCACTGACCTGGGCCCGTTCTGTGATGATTCCTTGTTTACATTCTGACCCG-GACCTCCAACATTCCTCNNATTGTTGGGAACCAGGGAGT-GAGATCGGCACGAAGTTCAAA-----------CCCTCCCCTGCTGTCTGCACAGCCACCAGC--CTTGTTGCTGGAACATGCTGGGGATTTTATGC-AGGAACTGCGGGTGG-----CAGGG----AGACAG---TGGGCAGAAGGAGCTGGTGACCT---TGGCGAAAACGGAACC-----------------------TCACCCTCCCATGGGCAGCTGGGGCTCTGGGCCCTGCAGGGTCAAGGGGAGGATGCG---------TCTGCCGCCTTCCCCCACAGGCGGCCAAGGACCGTCCGCACACCCT--CT s panTro1.chr19_random 2608756 483 + 57627672 ----TGTGCAGTGTT-CTGGAATCTGAAAGCCGT-GGCTTAAGACGCAGGCTTCC-GCGTGCAATAGCTGAGCTG-TGTGTTTTCATGAGACCAAAGACACATCGACGTCGTC-----AGGCATCCGGGGCTCCCTGCAGCTCAGTGTGAGGTTCACTGACCTGGGCCCGTTCTGTGATGATTCCTTGTTTACATTCTGACCCG-GGCCTCCAACATTCCTCAAATTGCTGGGAACCAGGGAGT-GAGATCGGCACGAAGTTCAAA-----------CCCTCCCCTGCTGTCTGCACAGCCACCAGC--CTTGTGGCTGGAACACGCTGGGGATTTTATGT-AGGAACTGCGGGTGG-----CAGGG----AGACAG---TGGGCAGAAGGAGCTGGTGACCT---TGGCGAAAACGGAACC-----------------------TCACCCTCCCATGGGCAGCTGGGGCTCTGGGCCCTGCAGGGTCAAGGGGAGGATGCG---------TCTGCCGCCTTCCCCCACAGGCGGCCAAGGACCGTCCGCACACCCT--CT s mm5.chr11 121431916 423 + 121648857 ----GTTGTAGTTTTTTTAGATATTAAAA--------TTAAAGATCCAACCTTTC--TGTGTA----------TA-TGTACT---ATGAGAACCAAGACACA-------------------------GGAGTGGCTGTAGTTCTGTGCAAAGGTCATTGACCTTGTCTGAGACTGGGATAAATTATTGTTTACATTCTGATGGGAGACCTCCAACATTCCTCAAATTGTTAGGAAATGGGCA---GAAATCAG-AAAAGATTCAAA-----------CATCTCCAT---------ATAGTCA---------------TGG---ACTCTGGGGGCTCTATGTGAGCAGCTGTGTGAGACTTTCCTGGG----TAATAGCACTAGACAGAACAAGTTGG---------TGGTGGGGACAATAGT-----------------------TCTTTCTT-----GGTACCAGGCAGGCTGGGTTCTGGCAGGTTGAAAAGAGTTTCTGCAAAGCAGCCCTGTGGGATTCCCCTGTGGACAGCTCTAGGCTGTCAGCACCCTCT--CT s rn3.chrUn 69969343 461 - 75822765 ----GTGGTAGTGTTACTAGATACTGAAA--------TTAAAGATTCATGTTTTCTGTGTATAAAAGCTG-GCTG-TGTACTATTATGAGATCCAAGACACA-------------------------GGAGTGGCTGTAGTTCTATGTGAGGGTCGTTGACCTTTCCTGAAGCTGGGATAATGTATTGTTTACATTCTGAGGGGAGACCTCCAACATTCCTCAAATTGTTAGGAAGTGTGCA---GAGATCAG-AAAAGATTCAAA-----------CTTCTCCAC---------ACAGCCA---------------GGG---ACTCTGGGGGCTCTATGTGAACAGCTGTGTGAGGCTTTCCTGGGTAAATAACAG---TAGACAGAACAACTTGG---------TGGTGGGGACAGAGACTGAATAACCCCAGGGATAATAGGTCTTTCTT-----GGTACCAGAGAGTCAGGGTCCTGGCAGGTTGAAAAGAGTTTCTGCAAAGCGGCCCTGTAGGATTCCCCCATGGACAGCTCTTGGCTGTCAGCACCCTCT--CT s canFam1.chrUn 6352335 459 + 91062872 TACACAGGCCGTTTTTCTGGAATTTGAAAGCTTTTGGCTCAAGACACGAACTTCG--CGT-------------TGTTGTGTTTCCACGAGACCAGAGAGACGCACACGTGGTCGCCCGAGGCGTCAGGGACACCCTGCAGGTCGCGGCGAGG-TCACCGCCCTCG-CTGATTCTGTGA-GAAGCCCTGTTTACATTCCGACCCCAGGCTTCCGACATTCCTTAAATTGCTGGAAACTTGGGAGCAGAGCCCCACATGAAGTTCAAACACCCTCTGCGCCCCCCCACGCTGTCCACGCAGCCGGCGTCAGCCCGGGACAGGGACGTGCTGGGGGCTTCATGC-AGGAG-GGCGGACGGAACTAAGGGG--------CG---CAGACAGAC--ATCTGCTGACCTCGGGGGTGGGGGCG----------------------------TCCTGCT------GGGACCCAGGGCT----GGCCTGCAGGGT--------------G---------GCCGCCGGG----CCCGGGAATGCAC----GCGGTCCGCACACCCTAGCT a score=-690.0 s hg17.chr17_random 443904 2 + 2618010 --AC- s panTro1.chr19_random 2609239 2 + 57627672 --AC- s rn3.chrUn 69969804 2 - 75822765 --GC- s canFam1.chrUn 6352794 5 + 91062872 GGACT a score=29808.0 s hg17.chr17_random 443906 283 + 2618010 CCCAGAGAAAACTCGGGTGTAGGAAGC-AGGCGACTG-TGAGGTCAGC--------TGCGTCTCTCTCTGGCCTG--GGTCCCAGGGCCGGAG----CCTCTGTCCTGGTCCTGGGTGTCCCCCCGCTGCCCGCTTTGGGCTGCCCTGGACTCAGGCAGCCCTGCTGGTAAAGTGCCCGAGGAGGTGAATGTGCTGCTGGGCCGGAGTTCTGGTCGGGAAATCTCAGTGGGAACAGAGGCTGAGGACGCACAAAGGGTCCCAGCAGCCAGAAAGGACGGGGAGCAAG-GGGAGCCCGGGA s panTro1.chr19_random 2609241 282 + 57627672 CCCAGAGAAAACTCGGGTGTAGGAAGC-AGGCGACTG-TGAGGTCAGC--------TGCGTCTCTCTCTGTCCTG--GGTCCCAGGGCTGGAG----CCTCTGTCCTGGTCCTGGGTGTCCCCCCACTGCCCGCTTTGGGCTGCCCTGGACTTA-GCAGCCCTGCTGGTAAAGTGCCCGAGGAGGTGAATGTGCTGCTGGGCCAGAGTTCTGGTCGGGAAATCTCAGTGGGAACAGAGGCTGAGGACGCACAAAGGGTCCCAGCAGCCAGAAAGGATGGGGAGCAAG-GGGAGCCCGGGA s canFam1.chrUn 6352799 265 + 91062872 CACAGGTGAGAACTGGCTATAGGGGTCTTGGGGTCTGCTGTGGCCAGCGGGTCCCGCGTGCCTCTCCTGGTCCCTCCGGACTCGAGGCTGGGGACACACCCTGTCCTGGCCCTGGACGTCTGTCTGTTGTCCGCTCTGGGTGAGAGTGGGGGGA-GCAGCCAGATGGGAAACGGGTGAGAGAAGCCA-----GCAGCTGAGC-----------------------------AGCAGGTGCTTCAAACACAGGAGGGGATCCCGGATGCTCTGCGGAGGGCAAGTAGGTGAGGGCTAGGGA a score=15489.0 s hg17.chr17_random 444189 169 + 2618010 CGGGCCGTGGGAGAAGACACCTGGAGCGAACTCACGGGGTGACAGCTGACGCTGCCTGGGGGCAGGAGAGGGAGATGGTCCAGGGCCCCAGGCCTCAGGCTCGAACCAGGCAGGAGACCCACGCGTGCAAGACAGGCAGATGGGGCCCGGTAGAGAGGGGTCGCGAACT s panTro1.chr19_random 2609523 169 + 57627672 CGGGCCGTGGGAGAAGATACCTGGAGCGAACTCACGGGGTGACAGCGGACACTGTCTGGGGGCAGGAGAGGGAGATGGTCCAGGGCCCCAGGCCTCAGGCTCGAACCAGGCAGGAGACCCACGCGTGCAAGGCAGGCCGATGGGGCCCGGTAGAGAGGGGTCGCGAACT a score=45375.0 s hg17.chr17_random 444358 495 + 2618010 CACGGGGTGACAGCGGACGCTGTCTGGGGGCAGGAGAGGGAGATGGTCCAG-------GGCCTCAGGCTTGAACCAGGCAGGAGACCCACGCGTGCAACGCAGGCCGATGGGGCCCGGTAGAGAGGGGTCGCGAACTCACGGAGTGACAGCGGACGCTGCCTGGGGGCAGGAGAGGGAGATGGTCCAGG------------GCCCCAGGCCTCAGGCTCG-AACCAGGCAGGAGACCCACGCGTGCAAGGCAGGCCGATGGGGCCCGGTAGAGAGGGGTCGCTCGGGGCACAGAGCTCGGAGCAGGGCGGCCGTGGGGCTCCGCTCACAGGGAGAGGCACAGGGTCGAGTGAGGAACCCTTCCTGCCGCAGCCAGGCTGGCCGTGGAGATGGGCCGAGAATGGGGAGGGCGTC------CCCAGCA-GGGCATTCG----GGGTCAGGAGGCGCCCGTGGGC-GGCAACACCGTGGGCTGGAGGCACCGCGTCTGGCAAAGGGAAGGCCCCAGTCCGGCGGCTTCAC s panTro1.chr19_random 2609692 502 + 57627672 CACGGGGTGACAGCGGACGCTGTCTGGGGGCAGGAGAGGGAGATGGTCCAGGCCCCCAGGCCTCAGGCTCGAACCAGGCAGGAGACCCACGCGTGCAAGGCAGGCCGATGGGGCCCGGTAGAGAGGGGTCGCGAACTCACGGGGTGACAGCGGACGCTGCCTGGGGGCAGGAGAGGGAGATGGTCCAGG------------GCCCCAGGCCTCAGGCTCG-AACCAGGCAGGAGACCCACGCGTGCAAGGCAGGCCGATGGGGCCCGGTAGAGAGGGGTCGCTCGGGGCACAGAGCTCGGAGCAGGGCGGCCGTGGGGCTCCGCTCACAGGGAGAGGCACAGGGTCGAGTGAGGAACCCTTCCTGCCACAGCCAGGCTGGCCGTGGAGATGGCCCGCGAATGGGGAGGGCGTC------CCCAGCA-GGGCATTCG----GGGTCAGGAGGCGCCCGTGGGC-GGCAACACCGTGGGCTGGAGGCACCGCGTCTGGCAAAAGGAAGGCCCCAGTCCGGCGGCTTCAC s canFam1.chrUn 6353162 350 + 91062872 CATGAGATTTTATTGGGTGCTGA-----------------------------------GGCTCCAGGCAGGTCCCTGGGGAGGGTGCACCGCGAGCAA-------------GGGCCAGCAGAT--------------------GAGACACCTGGTGCTGT-------------AAGGAGCTTCTCCAGGTGTTGGAATACAGTTTGGGGCCTGGAGCTCACAGCAAGGCCGTTGGC-------------GTGGACCCCTGAGTCCATGT-----------GACCTGGGCTCAGAGCT----------------GGGGGCTTGGCTCA----GGGGGGCAC----------------------------------------CCGTTGCGG-GGGCTGTGATTGGGGAGGGTGGCCTTGGGCCCAGCAGGGGCGCCCGGCGAGGGCAGGGAGGCACTCATGGGCTGGCGACAC----GGGTGGAAGCCACTGGCCAGGTCAGGAGA-------CGCCCGGCGTCTTGGG a score=539.0 s hg17.chr17_random 444853 327 + 2618010 G-----GCCC-------ACCGCGGTGTCC---GGNTTGAGGCGG--GGGCCGCGC---GCATCCTCGGGGGGGGACAGTCGGCCCCGGGCGAGGGGCTACCCCTCANGGCCCCCGTCCCCGAAAGGCCACGGGT--GTGGGGACTCGAGCCTGGCCTCGGATCTC---------AGGCTTGGACGGAACCTAGTGAGGACCTGACA-CCGTGGGGGCGGCCTGTGGT---CCCCGTCCGTGGCCA-------GGCATCCCCCGTTCACCCATCAGCTGCCTGAGCTCCGCCACCTCATGGCCGGGTGCTTTGGCACCCGGGATACTTCACTGAAAAGAGACTTTTTCCACTGTGGCCGAGAACGAGGGA s canFam1.chrUn 6353512 319 + 91062872 GAGGAAGCCTGAGAGGGACAGCTGTGTGCTGGGGGTGGGGACTGAAGGGCAGTGCACAGCGTCCCCGGGGGGTG------GGCCCCAACTCGGGCGGCACCCC---AGGCCCGCCCCCC----AGGACGCGGGAAAGCAGGGTCTCAGGGTGGGGCTGAGGCCACCCCACAGACGGGTCCTGGCCGCTCCCAGTGGGG--CTGAGGTCCCTGAGGGGAGCTGGAGGCAGGCGCCGGCTGGGCCCACCCTCCGGGCACCCCGTGCTCGCGCCACTGCTGCCT--------TCACC-------------CTGGGACACCCGGCAAGTCTC--------------TCCTGCGCCGTGCCCCAAAAAGGGAGA a score=7005.0 s hg17.chr17_random 445224 501 + 2618010 TGTCCGCTCC-------GCTGGCCTCGTGCCCGGCCACG-----------CCACCATCACTTTCCAAAAGTGTCGCTGCGGAAGGCTCACTGGGAGGACAAATGTCGGCCCCACCCGCAGTTTCTCTGTTCCCTATTTTCTCACCACTTCTTGTTAA-TTTGGGGCTGCTGCTTCCTTTGGCCCCTGCTCAGGCTCTGGATTCTGGGCTTAGTCCTG-TGGGCAGTTCTGTGAGCTTATGATTAAATACCTGATATTATTAAATACTCAGGAGCATGTGTGAGAGCCGCTGGCCCTGGTGCCCGGGTTACAGCTGTGTGGGGACGTCGGTGCTGCCTGC-CTCCTGCCCCGCTNGGGGGGAGGGAGCCCCCCCAACCTATGCTGCAGGTGTGACACCATGGAGGCCAGCCCCTGGCGCCGGTGACGTCTCGGGGTGACAGGCAGGACCCCCTTGTCCTGCCTCCTTCCCGGATGTCTGATTTGGCCGGGAT----TTGAGGCTGTGGGGGCCACCGCCTCCTGAGG s canFam1.chrUn 6356327 412 + 91062872 AGTTTGCTCCAGATCCCGTCGGCTCCTTTTCCAGCCGCAGGAGCGGGTCTTCAGGGTCACGTCCCGACAGCA------------GCTCA----GAGGC------TCGGCCCCACCCCCACATTCCCTGTTCCCTCTTTTCTCACCACTTCTCCTTAACTTTGGGTTTGCTTCTTCCTCTTTGCCCTCCTCGTGCCCTTGATTCTGGCGGTGG--CTGCTGGGCACGCTTGC---TTTATGACCAAATACCTCAT-----------CTCGGCAGCGTGTGTGAGAGCAGCTGTCCC-----------------------------------GCCGCCTGCGCCCCTGCCC-----GGAGTCGTGTGGCCCCCACGGGCC----------TGCGGCACCA-----------CCCAAGGGACAGTGG-GCCGGGAGGGGAAGGG---------CTTGTCCTGCCCTCTGCCCTGCAGGCTG----GACCCGGATGGCCTCGTGGCTGC-GGGGCCCCCGCCCGCCCAGG a score=23134.0 s hg17.chr17_random 446319 244 + 2618010 GCTCCCACAGAGCCCTGGGCCTGGGAGGGTGGGACCACCCAGGAAGGGGACAATTCTGGGCCCCGGGATGCCCCCCCGCTCTGGGGACAAGGGGATGGTTTGTTAAAATCCCACTCCCGCTCTGTTGTGAAAGATGATTCTTGTCTTCCTGCACCACTCGGCCTGTCCTGAGGCTGCCGCCATTTCCCAGTCAAGCCCTGACCTCCTTCACAAGAAAAACCTCTCCCAGCCGAGAAACTCTCAG s panTro1.chrUn_random 4060179 244 + 240967748 GCTCCCACAGAGCCCTGGGCCTGGGAGGGTGGGGCCACCCAGGAAGGGGACAATTCTGGGCCCCGGGATGCCCCCCCGCTCTGGGGACAAAGGGATGGTTTGTTAAAATCCCACTCCCGCTCTGTTGTAAAAGATGATTCTTGTCTTCCTGCACCACTCGGCCTGTCCTGAGGCTGCCGCCATTTCCCAGTCAAGCCCTGACCTCCTTCACAAGAAAAACCTCTCCCAGCCGAGAAACTCTCAG a score=1924.0 s hg17.chr17_random 446563 16 + 2618010 CCCCCAGGAGCTCACC s panTro1.chrUn_random 4060423 16 + 240967748 CCCCCAGGAGCTCACC s fr1.chrUn 146430100 16 - 349519338 CCACTGGACCCTCAGT a score=21595.0 s hg17.chr17_random 446579 256 + 2618010 AAGTTCCCAGGCACCTGTTCCAGGGCCCCAGCTCAGTACTTCCATGGGAGAGCAGGTT--AGAAAGCCTGGAACATCCCAGCTCCACCT-CCCACATACCCTCAGACCCTGGGTGAGAGTGGGGTCC----CTGGCTCTACTCCCTAC-ACACC--CTCAGACCTCAGGTGACAGTGG---GGTTCCCAGCTC------------TACTCCTGACAGACCCCCAGACCCCCAGTGACAGTGGGGTCCCCAGCTCCACCTCCCCATAGACCCTCAGACCTCA s panTro1.chrUn_random 4060439 255 + 240967748 AAGTTCCCAGGCACCTGTTCCAGGGCCCCAGCTCAGTACTTCCATGGAAGAGCAGGTT--AGAAAGCCTGGAACATCCCAGCTCCACCT-CCCACATACCCTCAGACCCTGGGTGAGAGTGGGGTCC----CTGGCTCTACTCCCTAC-ACACC--CTCAGACCTCAGGTGACAGTGG---GGTTCCCAGCTC------------TACTCCTGACAGA-CCCCAGACCCCCAGTGACAGTGGGTTCCCCGGCTCCACCTCCCCATAGACCCTCAGACCCCA s fr1.chrUn 146430116 215 - 349519338 TAGCAGCCATGGACCGGTTCCA---------------CCTCCCACTGGACCCTCAGTT--AGCAGCCATGGA-----CCGGTTCCACCT-TCCAC-------TGGACCCTCAGTTAGC----AGCCTTAGACCAGTTCCACCTCCCACTGGACC--CTCAGTTACCAG----CCATGGACCGGTTCCC------------------CCTCC--------CACTGGACCCTCAGTTACCAGCCATGGACCAGTTCCACCTCCCACTGGACCCTCAGATACCA s danRer1.chr16 28891840 251 - 29693911 AAATGTCCAGGTACT----------CCTCAGCTCCAAATGTCCAAGGACTTTTCAGCTCCAAATGTGCAGGGACTCCTCACCTCCAAATGTCCAGGGACTCCTCAGCTCCAAATGTCCAGGGACTCC----TTAGCTCCAAATGTCAA-GGGCCTACTTAG-CTCCAAATGTCCAGGG---ACTCCTCGGCTCCAAATGTCCAGGTACTCCTCAG----CTCCAAATGTCCAGGGAC-------TCCTCAGCTCCAAATGTCCAGGGCCTCCTCAGCTCCA a score=-5924.0 s hg17.chr17_random 446835 15 + 2618010 TATGACAG---------------------------------------------------------------------------------------------------GGGGTCC- s panTro1.chrUn_random 4060694 114 + 240967748 GGTGACAGTGGGGTCCCCAGCTCCACCTCCCACATACCCTCAGACCCTGGGTGAGAGTGGGGTCCCTGGCTCTACTCCCCACACACCCTCAGACCTCAGGTGACAGTGGGATCC- s danRer1.chr16 28892091 16 - 29693911 AATGTCCA---------------------------------------------------------------------------------------------------GGGACTCC a score=15498.0 s hg17.chr17_random 446850 144 + 2618010 CCAGCTCCACCTCCCCATAGACCCTCAGACCTCATATGACAGGGGGGTCCCCAGCTCCACCTCCCAC-AGATCCTCAG------ACCCTGG------------------------------------------------GTGACAGTGGGGTCCCCAGCTCCACCTCCCCATAGACCCTGAGACCCCGGGTGACAGTGG s panTro1.chrUn_random 4060808 191 + 240967748 CCAGCTCCACCTCCCCATAGACCCTCAGACCTCATATGACAGGGGGGTCCCCAGCTCCACCTCCCAC-AGACCCTTAG------ACCCTGGGTGACAGTGGGGTCCCTGGCTCTACTCCTGACAGACCCCAGACCCCCAGTGACAGTGGGGTCCCCAGCTCCACCT-CCCACAGACCCTCAGACCCCAGGTGACAGTGG s fr1.chrUn 146430339 125 - 349519338 CCAGTTCCACCTCCCACTGGACCCTCAGTTACCA---GCCATGGA-----CCAGTTCCACCTCCCACTGGACCCTCAGTTAGCAGCCTTAG--------------------------------------------------------------ACCAGTTCCACCTCCCACTGGACCCTCAGTTAGCAG----CCATGG s danRer1.chr16 28892107 143 - 29693911 TCAGCTCCAAATGTCCAGGGCCTCCTTAGCTCCAAATGTCTAGGA-CTCCTTAGCTCCAAATTCCAGTGCTACCTCAG-------CTCCAA------------------------------------------------ATGTCCAGGGCCTCCTCAGCTCCAAATGTCCAGGGACTCCTCGGCTCCAAATGTCCAGGG a score=161.0 s hg17.chr17_random 446994 3 + 2618010 GGT s panTro1.chrUn_random 4060999 3 + 240967748 GGT s danRer1.chr16 28892250 3 - 29693911 ACT a score=-130.0 s hg17.chr17_random 446994 6 + 2618010 GGTTGT s danRer1.chr16 28892250 6 - 29693911 ACTCCT a score=123.0 s hg17.chr17_random 446998 2 + 2618010 GT s panTro1.chrUn_random 4061049 2 + 240967748 GT s danRer1.chr16 28892254 2 - 29693911 CT a score=0.0 s hg17.chr17_random 447000 2 + 2618010 TG a score=-31.0 s hg17.chr17_random 447000 1 + 2618010 T s panTro1.chrUn_random 4061051 1 + 240967748 C a score=0.0 s hg17.chr17_random 447000 1 + 2618010 T a score=-270.0 s hg17.chr17_random 447001 1 + 2618010 G s panTro1.chrUn_random 4061052 1 + 240967748 C s fr1.chrUn 146430464 1 - 349519338 A a score=652.0 s hg17.chr17_random 447002 28 + 2618010 CTGGTCCCACTTCCCACAGAC-CCT-GGAC s panTro1.chrUn_random 4061053 29 + 240967748 CCGGCTCCACCTCCCACATAC-CCTCGGAC s fr1.chrUn 146430465 22 - 349519338 CCGGTTCCACCTTCCA-------CT-GGAC s danRer1.chr16 28892256 28 - 29693911 CAGCTCCAAATGTCCAGGGACTCCTCAG-- a score=100.0 s hg17.chr17_random 447030 1 + 2618010 C s panTro1.chrUn_random 4061082 1 + 240967748 C a score=671.0 s hg17.chr17_random 447030 4 + 2618010 CTCC s fr1.chrUn 146430487 2 - 349519338 --CC s danRer1.chr16 28892284 4 - 29693911 CTCC a score=-448.0 s hg17.chr17_random 447034 28 + 2618010 TCAGGAAGGCATCCGGTGGTTGTATTGA s danRer1.chr16 28892288 15 - 29693911 ------AAATGTCCAGGGACT------- a score=382.0 s hg17.chr17_random 447034 4 + 2618010 TCAG s fr1.chrUn 146430489 4 - 349519338 TCAG a score=533.0 s hg17.chr17_random 447055 7 + 2618010 GTATTGA s panTro1.chr19_random 2613165 7 + 57627672 GTACTGA a score=1144.0 s hg17.chr17_random 447062 38 + 2618010 CCCCGGGTGTGAGAGCCCACGTGAAACGGAAGT--TGAGC-- s panTro1.chr19_random 2613172 38 + 57627672 GCCCGGGCATGAGAGCCCACGTGAAGCGGAAGT--GAAGC-- s danRer1.chr16 28892303 34 - 29693911 CCTCAGCTCCAAGTGTCCA--------GGGACTCCTCAGCTC a score=4810.0 s hg17.chr17_random 447100 105 + 2618010 CAACCTTCCATTGTTCCCTCA---------CCTGGCCCTGCCCCAGCTCAGACCTGAGCCAGCGGGTAGGTGCCCACCGCCAGTCCCAGG----CAGAGGTTCCTC----CGGTGCTCACAG-- s panTro1.chr19_random 2613210 104 + 57627672 CAACCTTCCATTGTTCC-TCA---------CCTGGCCCTGCCCCAGCTCAGACCTGAGCCAGCGGGTAGGTGCCCACCGCCAGTCCCAGG----CAGAGGTTCCTC----CAGTGCTTACAG-- s fr1.chrUn 146430555 106 - 349519338 CCCCCTCCCACTGGACCCTCAGTTACCAGCCATGGACCAGTTCCACCTCCCA-CTGGACCCTCAGATACCAGCCTTAGACCAGTTCCA-----------CCTCCCA----CTGGACCCTCAG-- s danRer1.chr16 28892337 113 - 29693911 CAAATGTCCAGGGCCACCTCAGCTCC----AAATGTCCAGGGCCACCTCAGCTCTAAATGTCCAGGGAC-------TCCTCAGCTCCAAATGTCCAGGGACTCCTCAGCTCCAAATGTTCAGGG a score=3354.0 s hg17.chr17_random 447205 15 + 2618010 CAGCCCTTGGCCCCA s panTro1.chr19_random 2613314 15 + 57627672 CAGCCCTTGGCCCCA s canFam1.chrUn 6357447 15 + 91062872 CGGGCCTGCGCCCCT s fr1.chrUn 146430664 15 - 349519338 CCAGCCATGGACCAG s danRer1.chr16 28892450 14 - 29693911 -CCTCCTTAGCTCCA a score=2128.0 s hg17.chr17_random 447220 15 + 2618010 TCCCGGCTCTTTCTG s panTro1.chr19_random 2613329 15 + 57627672 TCCCGGCTCTTTCTG s canFam1.chrUn 6357462 15 + 91062872 GCTCCTGCCTCGCCG s fr1.chrUn 146430679 15 - 349519338 TTCCACCTCCCACTG a score=25303.0 s hg17.chr17_random 447235 272 + 2618010 TTTGGGAATCTGGTGAGTATAAAGTGGCCT-TGCTTGCGGTTTACTTTGAGTTTCCCTGACTGTAAGTAGAACTTGCCATCCTCACGCATCCCCGAGA-GTGCCTGC-----CTGTGCCCTCCGGC--GGGGCCACCTCTCGCTTTCTGAGTCACGGCTCC-----------CTGTGGC-TCCCGACATGAACCTCATCAGCTGTGTGTGCTGCAGATGTTTCCTCCCAGTTCATGCCCTGCNTTNGCCCTTGTCTT--------TTGTCTTCTGATG-GTAGANNTNNNNNNANNACGTGC s panTro1.chr19_random 2613344 272 + 57627672 TTTGGGAATCTGGTGAGTATAAAGTGGCCT-TGCTTGCGGTTTACTTTGAGTTTCCCTGACTGTAAGTAGAACTTGCCGTCCTCACGCATCCCCGAGA-GTGCCTGC-----CTGTGCCCTCCGGC--GGGGCTGCCTCTCGCTTTCTCAGTCACGGCTCC-----------CTGTGGC-TCCCGACATGAACCTCATCAGCTGTGTGTGCTGCAGATGTTTCCTCCCAGTTCATGCCCTGCCTTTGCCCTTGTCTT--------TTGTCTTCTGATG-GTAGATTTGGATGTAGGACGTGC s canFam1.chrUn 6357477 280 + 91062872 GCCGTGAATCTGGGGGG--TAACATGGCCTCTCCCTGGGGTTTATTCGTGGTTTCCCGGCTGCTGACGAGGGCGCGGTCGCCCCGCACACCTCTGGGCTGTGCCAGCGCCCTCTGCGCGCTCCGGCCTGCGGCCACCTCGGGCGGGC---GCCCCGGCCCCAGAGCCAGTGTCGGCGGCTTCTCTGCGGGGCCCACGGGGCCTGCGTG-GTGATGGGTATTTTCTCGGGGTTCAGGACCTGCCTT-----TTGTCTTTGATGAGGTTCTTCACTGACACGCAGGGGTGTTT----------- a score=2795.0 s hg17.chr17_random 447507 11 + 2618010 GTCAGCCTTGT s panTro1.chr19_random 2613616 11 + 57627672 GTCAGCCTTGT s rn3.chrUn 69972257 11 - 75822765 GTTAGCTTTTC s canFam1.chrUn 6357757 11 + 91062872 GCCCGTCTTCT a score=81401.0 s hg17.chr17_random 447518 375 + 2618010 --CTTTCACAATTTTCCTCGTTTGTATCTGAACAAACCCTTCCTGGCCTCGAGTGTG-GGAGATATTCTCCTGTAGCTTTTACTTCCATCATCTTGCCCCCATC-----ACaagtcctcatccatctggaagcaa-----tttcc-ttgtgtttggttgaagatagggatccagtttcgctttcctaatgtgcgtggccag-tccctggcaccgtGCGCAGGCCTGCACCTCACCTCTGTCGGGCCCAGGCCTTCTCTGTGTGCC---GGGCTG------TTTCTGGGCTCTGTGGTCGGCTCCA-CTGGCCGCATGCCTGTCCCTGCACCACTGCCCCCACATGCCAACCCTGTGGCTTGGTTGTTGGTCTCAGCGTGCTCCTGGGAAACTCTCCTGCC s panTro1.chr19_random 2613627 375 + 57627672 --CTTTCACAATTTTCCTCGTTTGTATCTGAACAAACCCTTCCCGGCCTTGAGTGTG-GGAGATATTCTCCTGTAGCTTTTACTTCCATCATCTTGCCCCCATC-----ACaagtcctcatccatctggaagcaa-----tttcc-ttgtgtttggttgaagatagggatccagtttcgctttcctaatgtgcgtggccag-tccctggcaccgtGCGCAGGCCTGCACCTCACCTCCGTCGGGCCCAGGCCTTCTCTGTGTGCC---GGGCTG------TTTCTGGGCTCTGTGGTCGGCTCCA-CTGGCCGCGTGCCTGTCCCTGCACCACTGCCCCCACATGCCAACCCTGTGGCTTGGTTGTCGGTCTCAGCGTGCTCCTGGGAAACTCTCCTGCC s mm5.chr11 121435064 344 + 121648857 --CTTGGATGATGCTTCTCCTTTGTATGTTAACAGGTCCTTACCAGCCTTGGGTGTACAGTGGTACTCTCCTATGCGTCTTAC-ACTAAAGCTTTGCCGCCTTCTGCAGGCAAGTGCTCATTCATCTGGAAGTAACCTTGTCTTC-TCAGGTTTG--TTGAGATTGGG-TCCAGATTCACTTTCCTTGTGTGCGTAATCAG-ATCCTGGT-----------GTCTGCACCTCAGCTCGTCTGTAACCAGATTACCTCTTCGTACA---GGACAA------TTTCTGGGCTCTTT--TCCGTTCTACCTGTCTGTTTGTCTAT-CCTGCACCA--------ACACACC------GTCTCCTGATTTCTTGTAT-----TCCTATGGGGCAAGT------CC s rn3.chrUn 69972268 345 - 75822765 --CCTTCATGATACTTCTCTTTTGTATGTGAACAAATCCTTCCCAGCCTTGGGAATACAGTGATGCTGTCCAGTGAGTCTTAC-ATTAAAGGTATGCCCTCTGC---AGGCAAGTGCTCATTCATCTGGAGGTAATCTTGTCTTC-TCAGATTTG--TTGATAATGGG-TCCAGATTCCCTTTCCTTATGTGTGTAACCAG-ATACTGGTGTCTCTTAAGGGTCTGCACCTCAGCT-----------------TGTCTGTGTGCC---ATACAGTGCAATTTCCTGGCCTCTTT--TCTGTTCTACCAATCTGTTTCTCTAT-CTTGTACCA--------ACACACAAGAA--GTCTCCTGACTTCCTGTAT-----TCCTATGGGTCAAGT------CC s canFam1.chrUn 6357768 328 + 91062872 CCCCTTTAGGAT-TTCCCGTTCGGTGCCCTGACC-GCCCCTCCTGGGCTTGAATGTGTGAAGATATTC-----AAAGTCTTGCTTTCCACA------------C-----ACAAGTGCTCATCCATCTGGAAACAA-----TCTTCTTTGAGTTTGGGCTAAGATAGGGATCCAATTTCACGTCCCC----------ACCAGCTCCCTGGCACTGTGCACTGCTGTGCACCGCACCGCCCGCG---CCAGG---CCTCCATCTGCTCGGGGGCTG------CTTCTGGGCTCTGGGCTCTGCGCCG-TGGGCCGGG--------GCCGCA-----------GCGCCCGATCTCTACAGCTTGGTCACAGGTCT-GACACCCCGTGGGGCAGCGTCCCTGCC a score=34932.0 s hg17.chr17_random 447893 151 + 2618010 TTGCCCTTCAGTGACTCACTCGCTCCAGTA--ATCAAACACCTACTGTGTGTCAAGAAAAGTGTCACTGACAAAAGCATCTGCCTTCTTGAAGCCCATTCAAATGCAGTTATGTCTATGTTGGAGAGAGACAGACTT---TGTGATG---GAAGGTTCT s panTro1.chr19_random 2614002 151 + 57627672 TTGCCCTTCACTGACTCACTCGCTCCAGTA--ATCAAACACCTACTGTGTGTCAAGAAAAGTGTCACTGACAAAAGCATCTGCCTTCTTGAAGCCCATTCAAATGCAGTTATGTCTACGTTGGAGAGAGACAGACTT---TGTGATG---GAAGGTTCT s mm5.chr11 121435408 152 + 121648857 TGATTCTCTATCTACACACTCA----AGTATTTTTGAGCATCTACTATGTGTCAGGGGAGATGTCCCAAACAA---CAGCTGCTTCCCTGAAGCTGACCTCTAAATAGGATTGCACATGTAGGGGAAAGTGAAAGTTAAATGTAATGCTAGAAGGTTTT s rn3.chrUn 69972613 152 - 75822765 TGATTCCCTATCCACACATTCA----AGTATCTATGAGCATCCATGATGTGTCAGGGGAGATGTCCCAAACAA---TACCTGCTTCCCTGAAGCTGACCTCTAAATGGGATTGCACATGTAGGAGAGAATGAAAGTTAAATGTAATGCTAGAAGGTTCT a score=1532.0 s hg17.chr17_random 448044 18 + 2618010 -CTGGACAATGGTAATCGA s panTro1.chr19_random 2614153 18 + 57627672 -CTGGACAAAGGTAATTGA s rn3.chrUn 69972765 18 - 75822765 ACTGAGT-ACAGTAGGTGA a score=91237.0 s hg17.chr17_random 448062 1004 + 2618010 GCATGACAGTGAGTGGCAGCTGCTGtttagatggaattgtcagggaggctcaatgagaagtaggcatctgagcaaaactcaaaggaaaggagagagtgagccatggacgtcCTGACAATTCCACTTATGATACTTTTCCTCCTCCCCGAGGTCAGGATGGTCCCTACCTCTGCCGGTCTTGcatgttgttttaacgtatgtgagtggaaccccttgttctcatgccgcagcccattgtgtgaataggctacactatacctgtctgttcgattgttgatggctatttgggttgcttagtttatggccattttgaatatgctgccatggctgggtgaacatacgcgtttccgctgggtgtgtatctagggctgtgattgctgagtcagagtgtgtgtctgttcaacttttgtcggtaacgccaaaccgtctttctgagtggttatggattcatgctccaccagaggagagagttcccactgctcctcatccttggcaactcttgattttaccagtagtttaaattttagccacgttggtgggtgtggagtggtgtctcattgaggctaattttcacctccctgataactaaagatactggtccctatttcatgtgtttattggtcattcatacgtcttttgtaaactttctatatattttgctcatttgttgaattgagttgcttatAAAAATTATGTAtttgtttattttttgagatggagtgtccctctgtcgcccaggctggagtgcaatggtgcgatctcggctcgctgcaacctccgcctctcgggttcaggcgattctcgtgcctcagcctcccgagtagctgggattacaggcAATAAAAAttattttgaattgcaagtgttctgtatatattctgggtacaggtcctttgtccgatacatgtattgcaaatattctcttcagtctgtctttttaaaaattttcttaatagttctttttgaaaaacaaaggcttttaattt---tgaagtataatttattaa s panTro1.chr19_random 2614171 1005 + 57627672 GCATGACAGTGAGTGGCAGCTGCTGTTTAGATGGAATTGTCAGGGAGGCTCAATGAGAAGGAGGCATCTGAGCAAAACTCGAAGGAAAGGAGAGAGTGAGCCATGGACGTCCTGACAATTCCACTTATGATACTTTTCCTTGTCCCCGAGGTCAGGATGGTCCCTACCTCTGCCGGTCTTGcatgttgttttaaggtatgtgagtggaaccccttgttttcatgctgcagcccattgtgtgaataggctacactatacctgtctgttcgattgttgatggctatttgggttgcttagtttatggccattttgaatatgctgccatggctgggtgaacatacgcgtttccgctgggtgtgtatctagggctgtgattgctgagtcagagcgtgtgtctgttcaacttttgttggtaacgccaaaccgtctttctgagtggttacggattcatgctccaccagaggagagagttcccactgctcctcatccttggcaactcctgattttaccagtagtttaaattttagccacgttggtgggtgtggagtggtg--tcattgaggctcattttcacctcgctgataactaaagatactgatccctatttcatgtgtttattggtcattcatacatcttttgtaaactttctatatattttgctcatttgttgaattgagttgcttatAAAAATTATGTATTTATTCAttttttgagatggagtgtccctctgtcgcccaggctggagtgcaatggtgcgatctcggctcgctgtaacctccgcctctcgggttcaggcgattctcgtgcctcagcctcccgagtagctgggattacaggcAATAAAAAttattttgaattgcaagtgttctgtatatattctgggtacaggtcctttgtctgatacatgtattgcaaatattctcttcagtctgtctttttaaaaattttcttaatagttctttttgaaaaacaaaggcttttaattttcatgaagtataatttattaa a score=196600.0 s hg17.chr17_random 449293 2237 + 2618010 atatatacgtatatatacatatatacgtatatatacatatatatacacatataca------catatatacatatatacatatatatacacatatatatattgggctgtgcacagtggctcacgcctataatcccagcactttgggagcctgaggtgggcagatcacctgaggtcaggagttcgagaccagcctgaccaacatggtg------------------------------------------tggtggtggacacctgtagtcccagctacttgggaggctggggtaggagaatatatatatatataggtctgtttctggactctctgtgctgttctgtgatctacatgcttatcctaacactagtactctactatttgctgctttattgtatgtattgaaattaagtagtgtaaatcctccaaatttgttctttttcaaaattgttttggctatcccaggtcctttgccttcccatataaattttagaatctgttttagaatcaatttttacaaaaacaaatgcctgctaggattttgatagggattgagtctaatctatagatgaatttgaaagaaaagacatcttaacaatattgagtcttctaagccataaacgtggtatgtctttccattaatttagttcttcttaatttctctcagcaatgttttatagtttttggtatacaggccccacacacattttgttaaatttatccctaagtatatcatgcttctggatgcttttgtaaatatttgtttttgtttgttacttattttcattttccaattgtgctgatatacagaaatacagctaatttttgtatagttttatattccgtgaccttgttaagttcacttactcgttttagtagttttcttagatacatattttaggattgtgtatgaatagaatcatgttacctatgaataaagacagttaacttcttttccaatctgtatgactttcatttcatttcttggtttatggcagtgtctagaCCAATCTCTGCCttttttttttttttttttgntttgagacagagtttcgctcttgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcccgagttcaaacgattctcctaccctcagcctcccaagtagctgggactataggtgtccaccaccacgcccagctaatttttttgtatttttagtagagacagggt-----catgttggtcaggctgatcttgaactcctgacctcaggtgatctgcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgtgcacggcccaatctctctgcgtttttaatgggagtatttggtccattttcatttaatataattactgaaagttgggactgagtcttccatcttattgtttcatttattgtttattcctccttttttcttttccgctttttttttctttgggtatactgagtatttttccgtcttatctcttctgttggctcatcagctatgcctctttctttaatgcttttagtgctttctttagggtttaaggcacgcctctgtaatttaataacatttcctttaaatgctactatactacttgacttataatgtaagactcttcaatagtatgcttccattttctccctgaaatcctttttgctattattgtcatacatctacttctatatgtgttataattctccataataaattgtgattatttttgctttaaagagacacatttatgacaaagacattaaaaatgagaaaaggggcttttgtatttgccacatatttactggtgccagtgttcctcgttactcggaacagacccagttcctctctggaatcattttccttcagcataaagaacacttccatctcttgtcttgtacatctgctggtgacaagtgctctcaatttttgtttgtctgaaaatgctataattttatcacctcatttttgaaagatttttgctgagtcttggattctatgttgactgttgtattttttccccagaaccttctattacaggtgttctgccattgggttctgcctttccttgtttctggtaataactcAGCAGTATTTCTTATCGTCGCGTCTTGCCAAGGTCTGTTTGCTGTGATTGGTCAGACCGCATCTCCTAGCCTGTGGGGCTCTGGGCGTCGTTCAGATGACAGCTCCCACTAAGTgctctttgcctgcccgcacggggtctcccatatgtgcggcttaatgttcagccaaaggcacaaggggaccaccaggacca s panTro1.chrUn_random 4064345 2275 + 240967748 atgtatacatatatatacatgtatac--atgtatacatatatatacatgtatacatgtatacatgtatacatgtatacatatatatacacatatatatatTGggctgtgcacagtggctcatgcctataatcccagcagtttgggagcctgaggtgggcagatcatctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgtttctactaaaaatacaaaaaaattagctgggtgtggtggtggacacctgtagtcccagctacttgggaggctggggtaggagaatATatatatatataggtctgtttctggactctctgtgctgttctgtgatctacatgcttatccaaacactagtactctactatttgctgctttatggtatgtattgaaattaagtagtgtaaatcctccaaatgtgttctttttcaaaattgttttggctatcctaggtcctttgccttcccatataaattttagaatctgttttagaatcaatttttacaaaaacaaatgcctgctaggattctgatagggattgagtctaatctatagatgaatttgaaagaaaagacatcttaacaatattgagtcttctaagccataaacgtggtatgtctgtccattaatttagttcttcttaatttctctcagcaatgttttatagtttttggtatacaggccccacacacattttgttaaatttatccctaagtatatcatgcttctggatgcttttgtaaatatttgtttttgtttgttacttattttcattttccaattgtgctgatatacagaaatacagctaatttttgtatagttttatattccgtgaccttgttaagttcacttactcgttttagtagttttcttagatacctattttaggattgcgtatgaatagaatcatgttacctatgaataaagacagttaacttcttttccaatctgtatgactttcatttcatttcttggtttatggcagtgtctagaCCAATCTCTGCCttttttttttttt----------gagacagagtttccctcttgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcccgagttcaaacgattctcctaccct-agcctcccaagtagctgggactataggtgtccaccaccacgcccagctaatttttttgtatttttagtagagacagggtttcaccatgttggtcaggctgatcttgaactcctgacctcaggtgatctgcctgcctcagcctcccaaagtgctgggattacaggcatgagccactgtgcacggcccaatctctctgcctttttaatgggagtatttggtccattttcatttagtataattactgaaagttgggattgagtctttcatcttattgtttcatttattgtttattcctccttttttcttttccactttttttt-ctttgggtatactgagtatttttccgtcttatctcttctgttggctcatcagctatgcctctttctttaatgcttttagtgctttctttagggtttaaggcatgcctctgtaatttaataacatttcctttaaatgctactatactacttgacttataacgtaagactcttcaatagtatgcttccatgttctcccttaaatcctttttgctattgttgtcatacatctacttctatatatgttataattctccataataaattgtgattatttttgctttaaagagacacattgatgataaagacattaaaaatgagaaaaggggcttttgtatttgccacatatttactgttgccagtgttcctcgttactctgaacagacccagttcctctgtggaatcattttccttcagcataaagaacacttccatctcttgtcttgcacatctgctggtgacaagtgctctcaatttttgtttgtctgaaaatgctataattttatcacctcatttttgaaagatttttgctgagtcttggattctatgttgacagttgtatttttTCCCCAGAACCTTCTATTACAGGTGTTCTTCCCTTGGGTTCTGCCTTTCCTTGTTTCTGGTAATAACTCAGCAGGATTTCTTATCGTCGCGTCTTACCAAGGTCTGTTCGCTGTGATTGGTCAGACCGCATCTCCTAGCCTGTGGGGCTCTGAGCGTCATTCAGATGACAGCTCCCACTAAGTgctctttgcctgcccgcacagggcctcccatgtgtgcagcttaatgttcagccaaaggcacaa-gggaccaccaggacca a score=15775.0 s hg17.chr17_random 451530 118 + 2618010 ccatgtagatttctggggttctttctccacatggtttttccatctctggtacttcgcccatacttttcaggagccttggcctctctgagctctggcacctgtcttccgagctcagtta s panTro1.chrUn_random 4066620 118 + 240967748 ccatgtagatttctggggttctttctccacatggtttttccatctctggtacttcacccgtacttttcaggagccttggcctctctgggctctggcacctgtcttccgagctcaatta s rn3.chrUn 69973284 90 - 75822765 CTGTGCAGGTCTCTGAAGTTGTTTGTCTACAGAGTTCTCATGTTTCTG---------CTATGCT--------GCCCTGGCCTCTCTGAACTCTG-----------CTTGGCTCAACTG a score=15444.0 s hg17.chr17_random 451648 142 + 2618010 aactgttttgctctccttgagctcctctccctgtgctggggccagaaagcgcctccaggaagaacgccgcggtgtcgtagggttcaccttgcttgctgtctttgtctcggagatcacagctc-----tgtctgttgtctattgtctt s panTro1.chrUn_random 4066881 142 + 240967748 AACTGTTTTGCTCTCCTTGAGCTCCTCTCCCTGTGCCGGGGCCAGAAAGCGCCTCCAGGAAGAACGCCGCGGTGTCGTAGGGTTCACCTTGCTTGCTGTCTTTGTCTCAGAGATCACAGCTC-----TGTCTGTTGTCTATTGTCTT s rn3.chrUn 69973374 110 - 75822765 ACCTG-----------TGGTAGTTCTCTACCTATG-TAGATCCAGAAA-----------------------ATGTGACTGTGGTCACCTGGTTGGTTACCCTGGTCTC--AGACTACTGTTTTGCAATGTCTGTCATTCATTGTCTT a score=4601.0 s hg17.chr17_random 451790 17 + 2618010 agaacaaatgtttccta s panTro1.chrUn_random 4067023 17 + 240967748 AGAACAAATGTTTCCTA s mm5.chr11 121438069 17 + 121648857 AGAGAGAATGTTTTCTA s rn3.chrUn 69973484 17 - 75822765 AAAATCTGTGTTTCTGA a score=273003.0 s hg17.chr17_random 451807 1731 + 2618010 tttttttcctccagtttataatgtttgtggtaggagggatagtctcataccagatactctgttgtagccaaaagtgggagtcttttcttcatgtttcttcatttcacgttactatattccttctcactgagtgtctgttctgcattctgggtaacttatttagatctatcttcaagttcaataattctctttttatttttgcccactctgctgcttagttcatctaagagtttagcattttaattattatacaCACCATCTCTAATCTTGTCTGAACCACTGACACTCAATTACTTGATAACTCTTCAGTCATTTGC----GTCT---CCTAGCTAACTGCTTCCCTAAATCCTTGCACCCTCTACCCAAAAGCTACCCCTCACTCTGAGCAAGGACCTCACCATCTCCTTGACATCCAGGAAAACCAAGGACATTAACATGGGACTTCTCTCCACAGTGTTCC-ACAGGACTTGCACTCCTGGTCCCCTTCTCCGTATGTCTCCTTCTGTCCCCGAACCTTCTGCCGGTGCTCCTGACACTGGCCCTCA----------GGCCTCACTCCTGGGTGCTCAGCCCCTGTCTGAGTTGATTCCT---CTCTTCAGCTTCAGAGGCCTTCCCTGTCCCTCCAAGACTGCCTGAGCTTCTCTCCTCTGTGGGGCTTCCCATGCCTCCGGTGTGCCTTGAG---TGAGACACCCCCTCATATGTCTGCTTTCACC-TCACCCTAACCAGTCCCTCTATCTAGCTCctgctgctggctctgctgctggctctgct---CTCCCCCAGACTGCCAACAGACCCCTGCAGCTTTTCACCTGTGTTATCTGTAAACTTTCTTCACTCTTTCTTCTTCTAGGAACTCTTCTCACCTCGGCTTTCATGACTGTCAGTGCCCCGTCCACTTTGCTGTGGCCTTTTCTTTCTCAATGTGCCTTGAAGTCTTCAGGTTGGGGGAGATGCTGCCTGGGGCATGTGGGGGAGGGCGGGCCTAAACGGAGAAGGGGG-------CTGAGCAGAGACAGGAGGGGTGGTTGTGAGGGTGGCAGGAG-----------GCTGTGGGATTGAAGGAAGGGGGCTGGCGTGGGCTGGGGCCCAGGGA------------------AGGTGGTGTGGAGGAC-------------------CAGAGGCTCTTGACTGGGAATGCCGGCCATGCAGGGTCTGGTGACTGACAGGTGCGTATCTGTGCAGGCCCAAGCCAGTGCTGGCCAGAGTGGCCAAGGCGTCCC-CGATCGCAGGG-GCAGCTCTCCCTGCTGTGGCCCGCAGCTGGACAGTGGCTGAGCTAGGATTCAGCCGAAGCTGCCGGTCCTGCCGGAGGCTTT-----------CTTCTCACATCAGGGCCTTACGGCTGCCCCAACCCTGGCCCAGGTTTGTCACGGTTGTCCTGGGATCCCCTGAGGTTTCCCTGTTTCCCCTGCCTCTTCTGGGCACACAGATCTCGGGGGGCTTTCCTGAGCTGTCCTAAGCTCCAGCCTCCCAGATACCACCAGCTTCAGCGTCTTTTTCAGACCTCAGTGACAGCTGCCCCACGCCAGGTGCTGACCTTAAGCACCACTGTGCACCAGGGCTGGGTCCAG-ACACTTCCAGGCCTACTGTGTATCCTCCCCCTCCCCAGTGTTGACAAAACT--GCTCTCCATGGTTTTGGCCTCTGTTGGAGGGGTTGCCCCAGATTTACATGTTTTGAGATGGATTTGTGGCTGCAGTGTTCCTCTGGGTCCAGGCTGTGGCCCCACGCCTGGGAATCATGTC-------TGACCCAAGTGT s panTro1.chrUn_random 4067040 1727 + 240967748 TTTTTTTCCTCCAGTTTATAATGTTTGTGGTAGGAGGGATAGTCTCATACCAGATACTCTGTTGTAGCCAAAAGTGGGAGtctcttcttcatgtttcttcatttcacgttactatattccttctcactgagtgtctgttctgcattctgggtaacttatttagatctatcttcaagttcaataattctctttttatttttgcccactctgctgcttagtccagctaagagtttagcattttaattattatacaCACCATCTCTAATCTTGTCTGAACCACTGACACTCAATTACTTGATAACTCTTCAGTCATTTCC----GTCT---CCTAGCTAACTGCTTCCCTAAATCCTTGCACGCTCTACCCAAAAGCTACCCCTCACTCTGAGCAAGGACCTCACCATCTCCTTGACATCCAGGAAAACCAAGGACATTAACATGGGACTTCTCTCCACAGTGTTCC-ACAGGACTTGCACTCCTGGTGCCCTTCTCCGTATGTCTCCTTCTGTCCCTGAACCTTCTGCTGGTGCTCCTGACACTGGCCCTCA----------GGCCTCACTCCTGGGTGCTCAGCCCCTGTCTGAGTTGATTCCT---CTCTTCAGCTTCAGAGGCCTTCCCTGTCCCTCCAAGACTGCCTGAGCTTCTCTCCTCTCTGGGGCTTCCCATGCCTCCTGTGTGCCTTGAG---TGAGACGCCCCCTCATATGTCTGCTTTCACC-TCACCCTAACCAGTCCCTCTATCTAGCTCctgctgctggctctgctgctggctcCGCT---CTCCCCCAGACTGCCAACAGACCCCTGCAGCTTTTCACCTGTGTTATCTGTAAACTTTCTTCACTCTTTCTTCTTCTAGGAACTCTTCTCACCTCGGCTTTCATGACTATCAGTGCCCCGTCCACTTTGCTGTGGCCTTTTCTTTCTCAATGTGCCTTGAAGTCTTCAGGTTGGGGGAGATGCTGCCTGGGGCATGTGGGGGAGGGCGGGCCTAAACGGAGAAGGGGG-------CTGAGCAGAGACAGGAGGGGTGGTTGTGAGGGTGGCAGGAG-----------GCTGTGGGATTGAAGGAAGGGGGCTGGCATGGGCTGGGGCCCAGGGA------------------AGGTGGTGTGGAGGAC-------------------CAGAGGCTCTTGACTGGGAATGCTGGCCATGCAGGGTCTGGTGAC----AGGTGCGTATCTGTGCAGGCCCAAGCCAGTGCTGGCCAGAGTGGCCAAGGCGTCCC-CGATCGCAGGG-GCAGCTCTCCCTGCTGTGGCCCGCAGCTGGACAGTGGCTGAGCTAGGATTCAGCCGAAGCTGCTGGTCCTGCCGGAGGCTTT-----------CTTCTCACATCAGGGCCTTACAGCCGCCCCAACCCTGGCCCAGGTTTGTCACGGTTGTCCTGGGATCCCCTGAGGTTTCCCTGCTTCCCCTGCCTCTTCTGGGCACACAGATCTCACGGGGCTCTCCTGAGCTGTCCTCAGCTCCGGCCTCCCAGACACCACCAGCTTCAGCGTCTTTTTCAGACCCCAGTGACAGCTGCCCCACGCCAGGTGCTGACCTTAAGCACCACTGTGCACCAGGGCTGGGTCCGG-ACACTTCCAGGCCTACTGTGTATCCTCCCCCTCCCCAGTGTTGACAAAACT--GCTCTCCATGGTTTTGGCCTCTGTCGGAGGGGTTGCCCCACATTTACATGTTTTGAGATGGATTTGTGGCTGCAGTGTTCCTCTGGGTCCAGGCTGTGGCCCCACGCCTGGGAACCATGTC-------CGACCCAAGTGT s mm5.chr11 121438086 1421 + 121648857 CATT-----TCCATTTTTTTA-GATGGAGACAGGACGGATATACTCAT--------CCCTGCTGCAG------GTG-------TCTCTTCATATTTCTTAACCTCATTTTA-TATTTTTCCTTTCTCTGTTTCTTTCTTCTATATTCTGGATAACGTCTTCAGATCTGTCTTCGAGGTCATTAATTCTCTTTTCAGCTTTGTCTAATTTGCTGCTTGTCGTACCTAAGAGTCTGGC------------------------------TTTGTATGGCTCCCCAAAACTC------------ACTCTTGAGCCACTGGCCATTGTCTATCCCTGGT--AGTGCATTTCTAAATCCTTGAGTCTGTCACATCACATCTGTCCATCTCCCTGAACAAGAACCTC-CCAGAGTTTTGACATCCTGGAAAGCTGTGG--CTTATAGTTGGACTTTTCTCTACCAAACTCTGACAGCTTTTGTCCATGTG-----CTTGTACTTAG---TCTTCCTGTCCTCA---CTGCCCCCAGCGTT----ACCTTGGCCTCTGATGTGGTTATGGTCTTGCT-TTGTGTGCTCAGCATCACTCC-AGATAGTCCTTTAGCTCTTTAGCTCTTGAA--------------TCTGGGACCTCCCCAGTTACTCTC-----TGTAGCTTTTC------------------------TGAGATA---------ATGTCTG---TCATC-TTTCC------------------------------------CTTCTCCTTGCACTGTT----------------------------------TTTTTTTTTTTGTTTTTTG-----TTTTTTTTTTGTTTTTTTTTTT-------------------GTTTTTTTGACTCTCAGCTCCCAGTGGCATTTGCTGAGGCCCTTTCCACCTCAATGTGCTTTGAAGTTTCTAAA-GAGTGGAGCTATTGCCT-GGGCA---GGTGAAATGTTGGCTTGGAGGGAAGAGACTGTTTCCCTCCAAGCAGAGACAGATGTGTTAGTTCTGGGAACGATAGGAGTTGAAGGTAAAGGTATAGGGTTTGA-GAGGGAGGCT-ACATAGGATTGGGCTGA-GGA------------------GGGTGGTACAGAGGGCAGAGGCATTATAGAAGGAATAGAGACTCTTAAATGGGAACGCTGGCCATCCATGGT------------GGGTGTGCATCTGTACAGGCCCAAACCAGGCACAGTCAGAGCATCTGAGGCAGCTTGTGACACCAGGGCACAGCTTACAAGGCTATGGCTCTCAGCTGGCGAG-----GAGCTCAGGCTCAGCTGAAGCTGTTGATCCAACTGAA--CTTTGGTGGAAGGGCTATTTCATATTCAGGAC--ATGGCCTCCA----------------TTATCACAGTCATTCAGGAA---------------------CTCCTGTCTC----------------------------CCCTGAACCATCTTCA--CCCTGGTTCTAAGATGACA--------AGTTTCTCTTCAAAGAATCA---------------------GTGCTTA--TTAAACTCCACTGTATTCCAGTGCTGCCTTTAACACCCCTCAGGAACCACCATAT---------------TGTGTCTCTAAAACCTAGTCCTCCA-GATAGTTGCCTCTGTGGAGGGCCATACACCAGATTCATGTTATTGGGTTTGGACTTGTGACCACTGGACCCCACTGGGCATGTACTGT-GCACTGAGCCAGGGGTGATAGTT-------AG-----AGCGC s rn3.chrUn 69973617 1384 - 75822765 TTCTATGCTTCCATTTTTCA--GATAGAGACAGGACGGATA-TTTCAT--------CCCTGCTGCAG------GAG-------TCTCCTTGGGTTTCTTAACCTCATTTTA-TATTTTTCCTTTCTCTGTTTCTTTGTTCTGTATTCTGGATAATGTCTTCAGATCTATCTTCAAGGTCATTAATTCTCTTTTCAGCTTTGTCTAATTTGCTGCTTGTCTTACCTAAGAATCTGGT------------------------------TTTGTGTGGCTCACTGAAACTCAGTT--------ACTCTTGAGCCACTGGCCATTGTCTGGTCTTGGT--AGTGCATTTCTAAATCTTTGGGTCTCTTACATCACATCTGTCCATCTCTCTCAATAAGAACCTC-CCAGGCTTTTGACATCCTGGAAAGCCATGG--ACTATAGTTGCACTTTTCTCTACCACACTCT-----------------------------------GACCGCTTCTGTCTATG-------------TGCT----------------------------------------TGTACTTAG----------AGTC--TTCCT---ATCCTCA------------------------------------------CTGTCCTCAGTGTGACCTT---GGCCTCTCATGTGGTTTTAGCCTTG--------------CTTTTTGTGTTCAGCATCAGTCCAGTTAGTCTTT------------------TAGCTCTTTGACTCTCCAAGTTGGAATCTCCCCGGTTA---------CTCTCTGGCTTTTCCCTAACAATGTCTGTGATCTTTCTTTACTCCTTGCACT---------------------GGTTTTCCTGACTCTCAACCCTCAGTGGTCTTTGCTGGGGCCCTTTCCACCTCAATGTGCTTTGAAATTTCTAAG-TAGTGAA-----TTTCTAAGACA---GGTGACATATTGGCTTGGAGGGAAGAGACGGTTTCCCTCCAAGCAGAGACAGATGTGCTTGTTTTGGGAACGGTAGGAGTTGGAGGTAAAGGTATAGGGTTTGA-GAAGGATGCT-ACATAGGATTGGGTTGG-GGAGGATGGTACAGAGAGCAGAGGCATTGTGGAAGGA------------------ATAGAGACTTCAAAATGGGAATACTGGCCACCTATGGTGCGGTGGT----GGGTGTGCATCTGTACAGGACCAAACCAGCCACAGTC--------------------AAACATTTGAG-GCAGCTTATGCCACCAGGG--TGCAGCTAACAAGGAGCTGAGCTGAAACTCAGCTGAAGCTGTTGATCCAGCTGAA--CTTTGGTTGATAGACCGTTTCACATTCAGGGC--ATGGCCTCCG----------------TTGGCACAGTCATTTAGGAA---------------------CTCCTGTCTC----------------------------CCCTGAGCCATCTTTA-TCCTGGTCTCTAAGATGAGA--------AGCTTCTCTTCAAAGGATCA---------------------GTGCTTA--CTAAACCCCACTGTATGCCAGTGCTGCCATTAATACCCCTCAGGAATCACCATAT---------------TGCATCTCTAAAACCCAGCCCTCAA-GATTGTTGCCTCTGTGGAGGGACATACACCAGATTCATGTTATTGGGTTTGGATTTGTGACCTCTGGACCCCATTAGGCATGTGGTGT-GCACTGAGCCAGGGGTAATAGCCGTGTAATAGGTAGAGTTGT a score=102291.0 s hg17.chr17_random 453538 381 + 2618010 CTGGTGTCCTGTGCCTGGGGCGAGGCTCACGCCCACCGCATCCCGCCAGCTCAGCAC----CGGAGGCCCAGCCCTCTCCCCATCTCCCTTCCCTTCTCATTGTGATTCATCGTCTGTTTATTAAACATGTGGATTTTTGATTTGCAGTTTTTGGGGCTGCGAAGGCCTGATCCCACCAGCTGTTTACAATCTATCATCCAGCACAAATGGTTTCCACGTGGTTGTTATGCTGGCTTATGACTGGGAACAGAATCTTGGTATCCAAATATTGGACTTTCGGCTTAAAAATGAGTGCAGTTCTCAGCATTCCCATCCCTGTATTGACAGCAAATTTGCATATTCTCCTTGTTTGCTTTGCAGCTCAAGGTCGATGCTGTAGCCAGG s panTro1.chrUn_random 4068972 381 + 240967748 CTGGTGTCCTGTGCCTGGGGCGAGGCTCACACCCACCGCATCCCACCAGCTCAACAC----TGGAGGCCCGGCCCTCTCCCCATCTCCCTTCCGTTCTCATTGTGATTCATCGTCTGTTTATTAAACATGTGGATTTTTGATGTGCAGTTTTTGGGGCTGCGAAGGCCTGATCCCACCAGCTGTTTACAATCTATCATCCAGCACAAATGGTTTCCACGTGGTTGTTATGCTGGCTTATGACTGGGAACAGAATCTTGGTATCCAAATATTGGACTTTTGGCTTAAAAATGAGTGCAGTTCTCAGCATTCCCATCCCTGTATTGACAGCAAATTTGCATATTCTCCTTGTTTGCTTTGCGGCTCAAGGTCGATGCTGTAGCCAGG s mm5.chr11 121439507 348 + 121648857 TCTGTGTTTTGACCCAGGGGAGAGGCTC-------CTGCATCTTGCCAATGCAACACCCCACAGAGAGGCAACC--------------------TCCATATTCTGATTCA---TCTGTTTATGAAACATGTGGATTTTTGACTTGCAG-CTTGGAGGCTGTGTGGGCCTGGTGTCACCAGAAGTTTACAGTCTATCATCCAGC----ATGGCCTCCGTGCGCTGGTCAGAGTGGTTTGCTCAGGGAATAAGAATATCAGTGCCCAGACATGAGGCTTTCAGTCCAAAAGTGACTACA-TCCTTAGCATTCACATCTCCATAGTGATGG-AAATCAACACATCCTCCCTACTCAGTTTGCTTCGCAAAGTCACTATTATAATCAAG s rn3.chrUn 69975001 351 - 75822765 -CTGTGTTTTGACCCAGGGGAGAGGCTCATGCCTGCTGCATCCTGCCAATGCACCACCCCACAGAGG--CAATC--------------------TTCATGTTCTGATTCA---TCTGTTTATTAAACTTGTGGATTTCTGATTTGCGG-TTCAGGGGCTGTGTGGGCCTGGTCTCACCAGCTGTTTACAATCTATCATCCAGC----CTAGCCTCCATGGGCTGGTCACGCTGCTTTGCTCTGAGAATAAAAATCTCAGTGCCCAAACATGGGACTTGCAGCTCAAGA-TCAGTCTA-CCCTCAGCATTCACATCTCCACAGTAATGG-AAGTCTGCACATTCTCCCTGGTCCGTTTGCTCTACGAAGTCACGATTATAATCAAG a score=546.0 s hg17.chr17_random 453919 2 + 2618010 AT s panTro1.chrUn_random 4069353 2 + 240967748 AT s rn3.chrUn 69975352 2 - 75822765 AT a score=15750.0 s hg17.chr17_random 453921 171 + 2618010 GTCATTCTAAATGGGCGGCCCCTGGGAAACAGAACCAATGGCCGTTGCCTCAGCGTTAAATTGGGGGACCGATCACAGGCTCCTGAGGGGGGTGAGGGTGCTCAGGCCCTGGTGCCGTCCGGCAGGAACAGGCTTCTCCGGGCCTCGGGGGGACATTGCTCCACTCATGAC s panTro1.chrUn_random 4069355 170 + 240967748 GTCATTCTAAATGGGCGGCCCCTGGGAAACAGAACCAATGGCTGTTGCCTCAGCGTTAAATTGGGGGACCGATCACAGGCTCCTG-GGGGGGTGAGGGTGCTCAGGCCCTGGTGCCGTCCGGCAGGAACAGGCTTCTCCGGGCCTCGGGGGGACATTGCTCCACCCATGAC a score=58079.0 s hg17.chr17_random 454092 405 + 2618010 TGGTACAGCCCAGAGAGAGGCCCCTTTCCAGAGACCCTGAGTTACTGTCCCCAGAGAACACAATTTTTTtttcccaacagagagatgggcagaggccataaacagatagttcagagctatgagaacccaggtggct---------------------aaaaacatga----aaaacatggtctcaccagtaatccaagaaatacaaaacaaaacaGTACGGCCCTGGCATTTGCGAAACAGGCCCTGAACCTGCGAGGTGTGGCCACCGAGACCGACAGGCACCACAGCCTGGGGGGGCGTCGGCCAGCGTGCTCCAGGAAgttcacaccttc-gacctgtgtgttccaccctggacgagccatcccagagacaa-gggagtggacaaaactcagcgcccaaacacgttctcacagcattgttcataatcag s panTro1.chrUn_random 4069525 405 + 240967748 TGGTACAGCCCAGAGAGAGGCCCCTTTCCAGAGACCCTGAGTTACTGTCCCCAGAGAACACAATTTTTTTTTCCCAACAGAGAGATGGGCAGAGGCCATAAGCAGAGAGTTCAGAGCTATGAGAACCCAGGTGGCT---------------------AAAAACATGA----AAAACATGGTCTCACCAGTAATCCAAGAAATACAAAACAAACCAGTACGGCCCTGGCATTTGTGAAACAGGCCCTGAACCTGCGAGGTGTGGCCGCCGAGACCGACAAGCACCACAGCCTGGGGGGGCGTCGGCCAGCATGCTCCAGGAAGTTCACACCTTC-CACCTGTGTGTTCCACCCTGGACGAGCCATCCCAGAGACAA-GGGAGTGGACAAAACTCAGCGCCCAAACACATTCTCACAGCATTGTTCATAATCAG s canFam1.chrUn 6358151 405 + 91062872 TGACAGAGCCCACACATAGGGCTCCTTCCCGGGACCA-AAGTTACTTTCCGC-TCGAGCACAG----TCTTTCCCGATTGATAGATGGGCCAAGGTCATAAACAGGTAGTTCAGAGCTGTGAAAACCCAAAAGGCTGATAAGTATATGGGAAAAAAAAAAAACAAAAAAACAAAAAACGGTCTCGCCCAGAATCAAAGGAACACAAAACAAAGCAGTTAGGCCTTTACCTCGG------ATACCCTGTGCC------GGACGGCTGCC--------CCGGGGCCACGTTCAGGGAAGAGGTCTGCCTGTGTCCTTGAGCGAGTGCACACCTTCGGACCTCGTCATCCTGCGCTCCACGAGGCACCGTGAAGAAGACAGAAGTAGACAAGACTC-GTGCCCCAGCACGTTCTCACAGCCCTGCGTGCGAGCAG a score=15347.0 s hg17.chr17_random 454497 167 + 2618010 ggaagttagggcacatttaaatagtcaacatcagagcagtggttaagcaaatCCCCCAGTGCCTCTCAGAATCA-TATAATTGTTGAAAGAATGAATGGCGGACTGTGATGTAGCACGTAAGTCACATGGAGGAGGGGGTCTGAAGATCACGGGGATGCCTGTGGCCA s panTro1.chrUn_random 4069930 168 + 240967748 GGAAGTTAGGACACATTTAAATAGTCAACATCAGAGCAGTGGTTAAGCAAATCCCCCAGTGCCTCTCAGAATCATTATAATTGTTGAAAGAATGAATGGCGGACTGTGATGTAGCACGTAAGTCACATGGAGGAGGGGGTCTGAAGATCACGGGGATGCCTGTGGCCA a score=27329.0 s hg17.chr17_random 454664 215 + 2618010 TATCGAAGGAAGAGCATGATGGGAAAATCCATCAGCGGCTCTCAAGGACAgagcaggggagagtgacttccaggaggggaagaagattccagatgctgatggggtgctg--------gtgagc---agtgcacacgcttgtcaaaactcatcaaactgcactaaaggtctgtgctttgtattgtgtataaattatgttctcataaagttgatt-aaaaTCTATTATG s panTro1.chrUn_random 4070098 215 + 240967748 TATTGAAGGAAGAGCATGATGGGAAAATCCATCAGCGGCTCTCAAGGACAgagcaggggagagtgacttccaggaggggaagaagattccagatgctgatggggtgctg--------gtgagc---agtgcacatgcttgtcaaaactcatcaaactgcactaaaggtctgtgctttgtattgtgtataaattatgttctcataaagttgatt-aaaaTCTATTATG s canFam1.chrUn 6358703 209 + 91062872 TGTCGAGAGAAT-GAGTGATGGG-------ATC-----CTCTGCAGCACAGAACAAGCAGGTGCAGGTGCATGGCGGGG----AGATCCCGTATTCTGG-AGGGCGCTGCCCAGGGTGGGGGCCAGGGCGCGCACGCCTGTCACAGTTCACAGACCTGCAGTCAAGATCCATGCATTGTTTTGTATGTTAGTCACAAATTAGCAAAGTCAATTCAAAATACATCATG a score=3075.0 s hg17.chr17_random 454879 33 + 2618010 TAAAATTATATATAGACTTTCCCTCCATCTTAA s panTro1.chrUn_random 4070313 33 + 240967748 TAAAATTATATATAGACTTTCCCTCCATCTTAA a score=17388.0 s hg17.chr17_random 454912 98 + 2618010 AATATATAGGAAAAAGACAAAGGAAATAGGTTAAAATATCACTAATGGTTCATTTGGAATAATGAGATTTGGAGAGTTGGACAATTTCTTCTTCTTAC s panTro1.chrUn_random 4070346 98 + 240967748 AATATATAGGAAAAAGACAAAGGAAATAGGTTAAAATATCACTAATGGTTCATTTGGAATAATGAGATTTGGAGAGTTGGACAATTTCTTCTTCTTAC s canFam1.chrUn 6359135 98 + 91062872 GATGTACAGGAAGAAGGCAAAGGAAGCGTGTGCAAACACCACTGGCGGTCCTTTGGGAATGGAAGGGTCTGGGCAGGTGGATGTTTTCTTCTTTGTAC a score=569169.0 s hg17.chr17_random 455010 6406 + 2618010 TTTGTTTTCCgtggtaggtttgctcagtggtggcccccgcaaaagaaacgtttgcctcctagcctctgaatttgaatgtcaccatatttgggaaaagggtctttgcagatgtaatcttaataagagatcttaatatgagatcatctgagattacttggTTTTTAGtaagtaacctttaatttttagaacaattttaggttcacagcaaaattggatagaagttacacaggtttctcatatcacacccccacacaggcatacaacctccccttatcaatatttcccatcagagggtacatttgctacagtgaatgaacctacagcgacacagcatcgtgacccaactccgtggtttacatcaggatttactcttggtgttgtccattctaagcgtggacaaatttatcatgacgtgtagccaccgtggtagtgtcacagaacagcctcactgccctgaaaccctctgcgcttcccaggtcacccctccctcccccagctcctggcaaccactgattttatacggtctc---agttttgccttttgcaggatgtcatatagttgggatcatacagcacgtagccctttcagattggcttcttagtaatacatttgagtttctttcatggcttgacatctcatttcttttcagcgctgaataacactccactgtctggatgtgccactcacctactgaaggacctctttgttgttcccaagctttggcaattttgagtaaagctcctataaacgtctgtgtgcaggcttctctgtgtacatactttttcggttcatttacctaaataccaaagacagcgattgctggattctatggggagggtatgttccattttggaagagacggccagactgtcttcaatggtgctgcactgtcttgcgttcccagcagccgtgaacgagagctcctgttgctacacatcctggccagcattttgtgttctcaaaacacattctggccactctaatagatgtagagtggtatcattgttttaatttgcaatctctagtggcgtatgacgttgaacatcttttcataggcttacttgccatctatatatcttctttgatgaggtgtctgttttggtctcttgcccattttaaaatcaagttgttcatttttttattgttgagttttgattgttcttcatgtattttggatatcagttctttatcagatgtgtctgtggcttgccttctcattttcttgaaagtgtctttcacagagcagaaatttctaatttcaaagaagcccagcttatcaatcatttcttccatggatcgtgcctttaatgttgtatctaaaaagtcatcaccttacccaaggtcatctaggctttccctgtgttaacttctaagagttttatagttcgcattttacgttaggtctatgatccattttcagttagttttgtgatgggtgtaaagtctgtgtctggatttaatttctgcatgcagatgtccagttgctctatagcctcatttgttgaaaagacaatttttggccacagtatcgtctttgctcccttgccaaagatcagttgacaaaattatgtgagtctatttcaggactttatcctattctgttgctttatttgcctattctcatgtcagtatcttgattatggtgtcttttgcctctctctataaaccttagaatcagtttgtcaatgtctataaattaacttgctgggatttttattgagagtatgttcaatctacagattaatctagaacaactgactcgacaatatgtgagAgggtctccaaaaggttcatggaaaatgcatattatgaaaaaatgcgtagatttcaatttcaaaataaactcatactaccttgttataacacatctgaacaggctctagtttgaggcactaagaagaataggacagcagtttcaaaagagcccctatcagggcaacatgaattctgccaaCTGAATctttgagtttctcaccattaagtaggatgtttgttttagttttttggtagatactctttaacaagttgaaaaaattctcctgtattcctagtttgctgagagtttttaatcacgaataagtgttaggttttgtcaaatgcatttttgcatccatggatatgatgatgagatttttcttctttagcctattgatgtgactaattttcaaatgttgaaccagccttgcatacctggaataaaccctacttttcataatatataattatttttacatattgttgaatttaatttgctaatattttgttgaggatttttacatgtatgctcgagagacatttgtctgtagtaatatctttgtctggttttggtattagggtaatgctggcctcatataatgagttagaaagtattcctgctgtttctacattctgggagatattgtagaggactggcataattttttccttaaatgtttggtagaattcaccaatgaacccatctgggcttggtgctttctgttttggaaggttattaattattgattcaatttctttaatataaacaggcctattcagattatttgtttcttcttgtgtgaatttnggcagattgtgnntnnnnnnnannnnnnncattttatctaggttatcaaattggtgggcatagcatttttcaaaatattcctttattattcctttaatgttcatgggatctgtagtgatgtccccctttcatttctgatattagtaatttgtctctctctctttttttcttagcctggcagaggcttaccaattttactcatcttttaaaagaaccagcatttgtttttgttaatattctctataattcctggtttcaattttattgatttctgctctaa-ttttattatttcttttattatggttagtttggatttaacttgctcttctttttctagtttcataaggtggaagcttagacgactgatgttagatcttcttttctaatatttgcattcaatgctgtaaatttctaagcactgctttaactgtttcccataaattttgataagttgtatttttatttttatgtaattaaaaaaactttttagaaacagggtcttgctctgtcacccaggctggagtgcaatggcatgatcatggctcactgcagcttcacactcttgggctcaagtcatcctcttgcctcagtctcctgagcagctggtactacaggcacatacaactgtgcccagttaatttttacatgtttttgtagagatgggggtcttgctgtgttgcccaggctgatctcaaactcctggcctcaaatgatcctcatgcttcagcctcctaaactgctaattcaaaatattttaaaatttatcttgagatttc--------------tttttttttttgagacagagtctcactctatcgcccaggctggagtgcagtggcacaatctcagctcantgcaaactccgcctcccaggttcacaccattctcctgcctcaacctcctgagtagctggggctacaggcgcccaccaccgcacctggctaattttttgtatttttagtagagacaggatttcaccgtgttagccaggatggtctcgatctcctgacntcatgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccatcatgcccagctgaaatttcttctttaacccatgtactttttaaagtgttttgtttaatcttcaagtatttgggaattttccagctatctttctgttattgattttgagtttaatctgttgtggttggaaagcaaacgttgtgtgatttctgatttataaatctgttaaaatgtgtttcctggcccagaatgtggtctctcttggtaaatattcaatgcaagcttgagaagaattctcaatctgctgttgttgggtgtagtatttagatgtcaattatgtccagttgattgatggtgttgtngagttcatctgtgtccttattgattttctacctgctggatctgttcatttctgatagagggctgtggaagtctccagctctaatactggattcatctatttctcattgcagtgctgtgatgtttttacctcgtatatatttggcactctgttgttaggcacatacacattaaggattgttacatcttcttggagtgctgattcctttatcacctgtaatacttccctttgtctctgatagctttctttgctctgaagtctgctctgtctgaaattaatatagccactcccactttctttgattagtgttagcatggtatatctttctccatccatttacagcagatcttcaaataacatcattttgttcaacatcattttattttgttataatgataataagttttgtgcattctccccatgtctgtgtgggttttctctaggtattccagttcttcccacaccccaaagatgtgcacactaggagagctggtgtgtctccatggtctcactgtgagtgtgggtgtgtgtgaaatgtgccctgcaatggaaaagagtcctgtccaggattggttcccaccttgcaccctaagctgccgggataggctccagccacctgcaaccctgagctggagtaagtggattgaaaaataaatgaattattagtaaagtattttaaaataacaattcataaactatatgacaatcataaaaatacatgaccacaaataatgtggtacaaaagtgctcatcaagcctgccatgtttgctactgtttntntttgaattgagtggtggtaggaggtgctcctcagaattttcagtttacaagcatttattccttgatttaacccaccaccactatgaccactgtcattgatgattcctncaaaattgngtaaataattatcttacttgttttaatctttcttaaatgtatgtatatcttacatttatttcaatgtttaatattataagtatntttga--------gccnatatttagaagtttggtgatattgttgtgaccaganatatgtcacaaaaaacttaactcttgtgtttatcaattagcctataggaaaagtggttttgttatacatcactttactcaaaaagccacagtttccaagaacctaccactgacgtttagtgaagacttactatacttttaatctatccgtgtccttctatgaaagtgggtttcttgtagatgacatatagttgggtattgttttctatctactctgacaatctgtcnnnngattgatgtatttacaccattgacatttcagggattattaacataattgggttaatagctgctatatnnnnnactgctttctatttgttgcccttgatctttgtttctaattttgtcacacgttttctaccttttatggttttagttgaacattttgtattctttcattttctctccattctgagcatatcaactgtacttctttaaaaatttttttgtgtggtttcccttgagtttgcaatatacattatacaataatctgtaagtctactttcaaataacactatacagtttcatgggtggtgcaaatatcttataataacaaaatatttctaattcttaaccctttcttcctgtatcatgactgtcattcacttcatttatatgtgagcatatagatgcacacataattcagttcattgtcgctattattttgcactgttntctgtttgctaaattaaaaaaaagacaaagtttttattttacttcatttattcatgttccagtgctctcccttactttatgtagcttcaagtttctgacctacattattttccttctccttaaataatttcttctaatatttgttgtaaggaagtctattggcaaaaaattccctcaatttttatttgtttgagactttatttttccttcacttttaaaggataatttcgcagggtactgaattctagtttggtgtttttttctctcagcactttaaatatttcactccactctcttctngcttataca--------gcctgcctgcctgcctgnntnccnncnnnnnnnnnnnnnnnnctcccttccttccttccttcnttccttccttccttcctncnttccttcnttcnnttcttttccnttcccttncctncctccctccctccctctctccctctctctctctctcttttctttttctttctttttgaaagcctgttgcacaggctggagtgcagtggtgcacccacagctcatcacagcctagacctccctgggctcaggtgatcctcccacctcagcctcccaagtagctgggactacaagtgctcaccaccacacctggctaatttttgtgttttttgtagagatagagtcctgtcatgttaccctggctgatattgaactcctgggcttaagcatcccacttgcctcagcttcccaaagtgttgggattgtaggcatgagtcaccatgcccagctgcttacacaatttctgaggagaagtcagatg s panTro1.chrUn_random 4070444 6374 + 240967748 TTTGTTTTCCgtggtaggtttgctcagtggtggcccccgcaaaagaaacgtttgcctcctagcctctgaatttgaatgtcaccatatttgggaaaagggtctttgcagatgtaatcttaataagagatcttaatatgagatcatctgagattacttggTTttta-taagtaacctttaatttttagaacaattttaggttcacagcaaaattggatagaagttacacaggtttctcatgtcacacccccacacaggcatacaacctccccttatcaatatttcccatcagagggtacatttgctacactgaatgaacctacagtgacacagcatcatgacccaactccatggtttacatcaggatttactcttggtgttgtccattctaagcgtggacaaatttatcatgacgtgtagccaccgtggtagtgtcacagaacagcctcactgccctgaaaccctctgcgcttcccgggtcacccctccctctcccagcccctggcaaccactgattttatacggtctccatagttttgccttttgcaggatgtcatatagttgggatcatacagcacgtagccctttcagattggtttcttagtaatacatttgagtttctttcatggcttgacatctcatttcttttcagtgctgaataacactccactgtctggatgtgccactcacctactgaaggacctctttgttgttcccaagctttggcaattttgagtaaagctcctataaacgtctgtgtgcaggcttctctgtgtacatactttttcggttcatttgcctaaataccaaagacagcgattgctggattctatggggagggtatgttccattttggaagagacggccagactgtcttcaatggtgctgcactgtcttgcattcccagcagccgtaaacaagagctcc--ttgctacacatcctggccagcattttgtgttctcaaaatacattttggccactctaatagatgtagagtggtatcattgttttaatttgcaatctctagtgacgtatgatgttgaacatcttttcatatgcttacttgccatctatatatcttctttgatgaggtgtctgttttggtctcttgcccattttaaaatcaagttgttcatttttttattgttgagttttaattgttcttcatgtattttggatatcagttctttatcagatgtgtctgtggcttgccttctcattttcttgaaagtgtctttcacagagcagaaatttctaatttcaaagaagcccagcttatcaatcatttcttccatggatcgtgcctttaatgttgtatctaaaaagtcatcaccttacccaaggtcatctaggctttccctgtgttaacttctaagagttttatagttcgcattttacgttaggtctatgatccatttttagttagttttgtgatgggtgtaaagtctgtgtctggatttaatttctgcatgcagatgtccagttgctctatagcctcatttgttgaaaagacaatttttggccacagtatcgtctttgctcccttgccaaagatcagttgacaaaattatgtgagtctatttcaggactttattctattctgttgctttatttgcctattctcatgtcagtatcttgattatggtgtcttttgcctctctctgtaaaccttagaatcagtttgtcaatgtctataaattaacttgctgggatttttattgggagtatgttcaatctacagattaatctagAACAACTGACTCGACAATATGTGAGAgggtctccaaaaggttcatggaaaatgcatattatgaaaaaatgcgtagatttcaatttcaaaataaactcatactaccttgttataacacatctgaacaggctctagtttgaggcactaagaagaataggacagcagtttcaaaagagcccctaacagggcaacatgaattctgccaaCTGAATctttgagtttcccaccattaagtaggatgtttgttttagttttttggtagatactctttaacaagttgaaaaaattctcctctattcctagtttgctgagagtttttaatcacgaataagtgttaggttttgtcaaatgcatttttgcatccatggatataaggatgagatttttcttctttagcctattgatgtgactgattttcaaatgttgaaccagccttgcatacctggaataaaccctacttttcataatatataattatttttacatattgttgaatttaatttgctaatattttgttgaggatttttacatgtatgctcgagagacatttgtctgtagtaatatctttgtctggttttggtattagggtaatgctggcctcatataatgagttagaaagtattcctgctgttcctacattctgggagatattgtagaggactggcataattttttccttaaatgtttggtagaattcaccaatgaacccatctgggcttggtgctttctgttttggaaggttattaattattgattcaatttctttaatataaacaggactattcagattatttgtttcttcttgtgtgaattttggcagattgtgtctttcaaggaactgctccattttatctaggttatcaaattggtgggcatagcatttttcaaaatattcctttattattcctttaatgttcatgggatctgtagtgatgtccccctttcatttctgctattagtaatttgtcgctctctctttttttcttagcctggcagaggcttaccaattttactcatcttttaaaagaaccagcatttgtttttgttaatattctctataattcctggtttcaattttattgatttctgctctaatttttattatttcttttattatggttagtttggatttaacttgctcttctttttctagtttcataaggtggaaacttagacgactgatgttagatcttcttttctaatatttgcattcaatgctgtaaatttctaagcactgctttaactgtttcccataaattttgataagttgtatttttatttttatgtaattaaaaaaactttttagaaacagggtcttgctctgtcacccaggctggagtgcaatggcatgatcatggctcactgcagcttcacactcttgggctcaagtcatcctcttgcctcagtctcctgagcagctggtactacaggcacatacaaccatgcccagttaatttttaaatgtttttgtagagatgggggtcttgctgtgttgcccaggctgatctcaaactcctggcctcagatgatcctcatgcttcagcctcctaaactgctaattcaaaatattttaaaatttctcttgagatttctttctttctttttttttttttttttgagacggagtctcactctatcgcccaggctggagtgcagtggcacaatctcagct-----caaactccgcctccaaggttcacaccattctcctgcctcaacctcctgagtagctggggctacaggcacccaccaccgcgcctggctaattttttgtatttttagtagagacaggatttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcagcctcccgaagtgctgggattacaggcgtgagccatcgtgcccagctgaaatttcttctttaacccatgtactttgtaaagtgttttgtttaatcttcaagtatttgggaattttccagctatctttctgttattgattttgagtttaatctgttgtggtcggaaagcaaacgttgtgtgatttctgatttataaatctgttaaaatgtgtttcctggcccagaatgtggtctctcttggtaaatattcaatgcaagcttgagaagaattctcagtctgctgttgttgggtgtagtatttagatgtcaattatatccagttgattgatggtgttgttgagttcatctatgtccttattgattttctacctgctggatctgttcatttccgatagagggctgtggaagtctccagctctaatactggattcatctatttctcattgcagtgctgtgatgtttttacctcgtatatatttggcactctgttgttaggcacatacacattaaggattgttacatcttcttggagtattgattcctttatcacctgtaatacttccctttgtctctgataactttctttgctctgaagtctgctctgtctgaaattaatatagccactcccactttctttgattagtgttagcatggtatatctttctccatccatttacagcagatcttcaaataacatcattttgttcaacatcattttatttcgttataatgataataagttttgtgcattctccccatgtctgtgtggcttttctctaggtattccagttcttcccacaccccaaagatgtgcacactaggagagctggtgtgtctccatggtctcaccgtgagtgtgggtgtgtgtgaaatgtgccctgcaatggaaaagagtcctgtccaggattggttcccaccttgcgccctaagctgctgggataggctccagccacctgcaaccctgagctggagtaagtggattgaaaaataaatgaattattagcaaagtattttaaaataacaattcataaactatacgacaatcataaaaatacatgaccacaaataatgtggtacaaaagtgctcatcaagcctgccatgtttgctactgtttgtttttgaattgagtggtggtaggaggtgctccttagaattttccctttacaagcatttattccttgatttaacccaccaccactatgaccactgtcattgatgattcat-caaaattgagtaaataattat----cttgttttaatctttcttaaatgtgtgtatatcttacatttatttcaatgtttaatattataagtat-tttgagcctatatgcctatatttagaagtttggtgatattgttgtgaccagaaatatgtcataaaaaacttaactcttgtgtttatcaattagcctataggaaaagtggttttgttatacatcactttactcaaaaagccacagtttccaagaacctaccactgacgtttagtgaagacttactatacttttaatctatctgtgtccttctatgaaagtgggtttcttgtagatgacatatagttgggtattgttttctatctactctgacaatctgtcttttaactgatgtatttacaccattgacatttcagggattattaacataattgggtcaatagctgctatattgtttactgctttctatttgttgcccttgatctttgtttctaattttgtcacacgttttctaccttttgtggttttagttgaacattttgtattctttcattttctctccattctgagcatatcaattgtacttctttaaaaatttttttgtgtggtttcccttgagtctgcaatatacattatacaataatctgtaagtctactttcaaataacactatacagtttcacgggtggtgcaaatatcttataataacaaaatatttctaattcttaaccctttcttcctgtatcatgactgtcattcacttcatttatacgtgagcatatagatgcacacataatccagttcattgtcgctattattttgcactgttttctgtttgctaaattaaaaaaaagacaaagtttttattttacttcatttattcatgttccagtgctctcccttactttatgtagcttcaagtttctgacctacattattttccttctccttaaataatttcttctaatatttgttgtaaggaagtctattggcaaaaaattccctcaatttttatttgtttgagactttatttttccttcacttttaaaggataatttcgcagggtactgaattctagtttggtgtttttttctctcagcactttaaatatttcactccactctcttcttgcttataCAGCCAgcctgcctgcctgcctgcctgcctgcctgc----------------ctgccttccttccttccttccttccttccttccttccttccttccttccttc------------------------cttccCtccctcc------------ctctctctctcttttctttttctttctttttgaaagcctgttgcacaggctggagtgcagtggtgcacccacagctcatcacagcctagacctccctgggctcaggtgatcctcccacctcagcctcccaagtagctgggactacaagtgctcaccaccacacctggctaatttttgtgttttttgtagagatagagtcctgtcatgttgccctggctgatattgaactcctgggcttaagcattccacttgcctcagcttcccaaagtgttgggattgtaggcatgagtcaccatgcccagctgcttacacaatttctgaggagaagtcagatg a score=119552.0 s hg17.chr17_random 462180 1298 + 2618010 tgactcccacaacagtgaacgttgattatcctcaaggtctttggctcaggggtttggcgctgctcagctgagcctgtttggggtnngnnngtgaggttgcagtcgagaggtaggtcgacggtagccccctctcnaggctggggaggcttcagttccccacagggtgagcctcacaggctgcttacaggccctgcaacagggcagctgctcccccaaagtgaatgacaagagagtgcaccaggcagaagccatccttttctgacctcacctggggagtctcagagcatcactcccaccatatcctactcactaaaggcaggtccggaggcacagcccgcgttcaggggagaggaaccgggctctaccttttggaaggagggctgtcaaagtagcagatatactttaaaccatcaTGCCAGGTATCCAAGACCCCACAGCCTGTCCCAGCCCAAGGTCCCTGTTGCCTAAggagatgcacaatgaacatttgctcattaaagtttctgacagtcctgcaggtaagcaacctgtttggttgtgttcagttccaagtttatgtgcacatagaacACGTACAGCAATATGTCCAAGGCCTTTGTTTGGTGTACGGTAATGAGGAAGCAGACGGCAAGCTCTTTGGGGGCCAAGCGGGTGTGTCATACACACAACCCCGACCACAGTGCACACA--TGGGAGGCTTCCAAAACTGTGGACCAAATAATAATACCTCAATAGTATACTTA---------TTTCCTTTGCACATCAAGGTCAAATTCTAAAAAGGAAAATGTCTATATAACAGAGAGATTTCTAGGCTGTCCTTATGCCCAGAAGCCCGCATTCTATATGGTAAACGTTGACTCCGACCAGGAAGCCCCCAGAAGGTTTTTGTAGCCAACTTTGACCCAGACGACGGACAGTTTCCATTGAAGGCACACGTCTTCCATGAACATGGATGTTAAGATGACACCTCCTAACACCCGCAGGCAGGGGCCTCTTGACCTCTCTCCTGCGGTTGTGTCCTTTGCGGGTCAGGTTGCCGGAGAGACAACCACCCACGCTGTGAGCTGCAGAATTATTCACCTGCGTGGCTTACAGAATCAGCTAGGCCTGGTGGctcagcactgcgggaggccaaggcaggaggatccgctgaggccacgagttccacaccagcctgggcaacatagaccccatctctatttttcaaaaactaaaaataaaataaaaCCATCTCCTAGACCTTGGGCACTAGGACAAAACACGAAAAGCTGGGATCTGCCACTGCCTGCGGGGCAACCGGACC s panTro1.chr19_random 57406304 1308 - 57627672 TGACCCACACaacagtgaacgttgattatcctcaaggtctttggctcaggggtttgacgctgctcagctgagcttgtttggggtctgct-gtgaggttgcagtcgagaggtaggtcgacggtagccccctctcaaggctggggaggcttcagttccccacagggtgagcctcacaggctgcttacaggccctgcaacagggcagctgctcccccaaagtgaatgacaagagagtgcaccaggcagaagccatccttttctgacctcacctggggagtctcagagcatcactccaaccatatcctactcactaaaggcaggtctggaggcacagcccgcgttcaggggagaggaactgggctctaccttttggaaggagggctgtcaaagtagcagatatactttaaaccatcaTGCCAGGTATCCAAGACCCCACAGCCTGTCCCAGCCCAAGGTCCCTGTTGCCTAAggagatgcacaatgaacatttgctcattaaagtttctgacagtcctgcaggtaagaaacctgtttggttgtgttcagttccaagtttatgtgcacatagaacACGTACAGCAATATGTCCAAGGCCTTTGTTCGGTGTACGGTAATGAGGAAGCAGACGGCAAGCTCTTTGGGGGCCAAGCGGGTGTGTCATACACACAACCCCGACCACAGTGCACACACATGGGAGGCTTCCAAAACTGTGGACCAAATAATAACACCTCAATAGTATACTTAGTATACTTATTTCCTTTGCACATCAAGGTCAAATTCTAAAAAGGAAAATGTCTATATAACAGAGAGATTTCTAGGCTGTCCTTATGCCCAGAAGCCCGCATTCTATATGGTAAACGTTGACTCCGACCAGGAAGCCCCCAGAAGGTTTTTGTAGCCAACTTTGACCCAGACGACGGACAGTTTCCATTGAAGGCACACGTCTTCCATGAACATGGATGTTAAGATGACACCTCCTAACACCCGCAGGCAGGGGCCTCTTGACCTCTCTCCTGCGGTTGTGTCCTTTGCGGGTCAGGTTGCCGGAGAGACAACCACCCACGCTGTGAGCTGCAGAATTATTCACCTGCGTGGCTTACAGAATCAgctaggcatggtggctcagcactgcgggaggccaaggcaggaggatccgctgaggccacgagttccacaccagcctgggcaacatagaccccatctctatttttcaaaaactaaaaataaaaTAAAACCATCTCCCAGACCTTGGGCACTAGGACAAAACATGAAAAGCTGGGATCTGCCACTGCCTGCGGGGCAACCGGACC a score=3873.0 s hg17.chr17_random 463478 10 + 2618010 TGGCCTCCCT s panTro1.chr19_random 57407612 10 - 57627672 TGGCCTCCCC s mm5.chr11 238086 10 - 121648857 TGACTTCTCT s rn3.chrUn 5881127 10 + 75822765 TGACTTCTCT a score=98607.0 s hg17.chr17_random 463488 407 + 2618010 GTTTGGTGAGCTAGCTTCTGAAAGCTCAGTCTTCAGTTTCTCTTTGCTGCCCCTTCAACGTCACCCTGAGACCTTCAAATGCTTTACGTCTGTCCT-CCAAGTCCAGGCCCGCGTTCCAGGGGACCCATTCCCCACCAGGCTCAGCCTTTTCCAGACAGCACCTCATGTCGACGCAGGGCTTGTCAGTGCCTTTATTATCTGTCTCCAGTGATGTTCTCCCAGCTTGTCTCCTGACTGTCTGGGACAAGCCCTCAATCCTACCCAGGCTGATGACCATCAAATCTGGCACCTCCAAATTAAGCCCTGGGGTGGCCATGACACTCCAGCGACAGTGCCTGC----TGCCCGAGCACGCTGGACAGAGGGATGTGTGGCTGGGCGGACGG-GCCATGAGTCTCTG-AGGACGACAG s panTro1.chr19_random 57407622 405 - 57627672 GTTTGGTGAGCTAGCTTCTGAAAGCTCAGTCTTCAGTTTCTCTTTGCTGCCCCTTCAACGTCACCCTGTGACCTTCAAATGCTTTATGTCTGTCCT-CCAAGTCCAGGCCCGCGTTCCAGGGGACCCATTCCCCACCAGGCTCAGCCTTTTCCAGACAGCACCTCATGTCGACGCAGGCCTTGTCAGTGCCTTTATTATCTGTCACCAGTGATGTTCTCCCAGCTTGTCTCCTGACTGTCTGGGACAAGCCCTCAATCCTGCCCAGGCTGATGACCATCAAATCTGGCACCTCCAAATTAAGCCCTGGGGTGGCCATGACAC--CAGCAACAGTGCCTGC----TGCCCGAGCACGCTGGACAGAGGGATGTGTGGCAGGGCGGATGG-GCCATGAGTCTCTG-AGGACGACAG s mm5.chr11 238096 364 - 121648857 GCTTGGTGATCTGATTTCTAGATAGTGGGTACCAAATTTCTCTTTGC--ATCCTTCAGCAGTGAACTATGGGCCTC--ATCCTTCATATCTGCCC----------------------------------------ACAGATTTAGTCTTTTCTAGACAAAAGCTCAGATCTTTGTGGGCCTTCTCAGTGCCTCTACTGATCATCTCCAGTGACACTCTCCT-GCCTATCTCATGTCCCTCTGGGACGAACACTCAGTCTTTCCCAGAAAGACACTCACTAAATCTGACACCCTGGAATTAACCCTAAGCATGACTGTGATAC-CCAGATTCAGAGCTTACGTGGTCCCTAAG---GTATAATGAATGGAAGTAGAGATGGGTGAATAGTGACAACAGTCTGTA-CGGAATGCCA s rn3.chrUn 5881137 355 + 75822765 GCTTGATGATCTGGTTTCCAGATGTTGGGTACCAGATTTCTCTTTGC--ATCCTTCAGCAGTGAACTGTGGGCTTC--ATCCTTTGTATC---------------------------CAGGGTACCCACTGCCC-ACAGATTTAGTCTTTTCTAGATGAGAACTCAGGTCTTTGTGGGCCTTCTCGGTGCCTCTACTGATCATCTCCGGTGACAC-----------------------TCTGGGGCAAAACCTCAGTCTTTCCCAGAAAGATACTCACTAAATCTGACACCCTGGAATTAACCCCAAGCATGACTGTGATAC-CCAAATACAGAGCTTATCTGGCCCCTAAG---GTATAATGAATGAGAGTAGATATGGGTAGATAGTGACAACAGTCTCGACAGGATAACAG s canFam1.chrUn 84720329 353 - 91062872 GCTTAGCGAGCGAGTGTCCAGGC-TGCGGTGCCAAGTCCCGCTGTCA--CTCCTTGGGCATCATCCCATGACCTTCAGATGCTTTGGCTCCGATCTCCCAGGTCTAGGCCGTCATTGCAGAAGACCCA-------CCGGACTAAGCCCGTCCCC-CCGGCGCCCCGTGTCTGCGCAGGCCTTCGCAGGGCCTTTACCATTTATCTGTGTTCACATTCTCCCGGCCTGTCCT-------TCTGGGGCAAGCCCTCAGTCCTGCCCCGGGTGATGACCAT----------------GAGCTACCCCCGGGGACGGCTGTGGCCCCCTGGACAGAGTGCCCGCTGGATGCC--ATCCCCTGAGGCAGGCGG---------CGGGCGGAGGG--------GCCGCTG-CAG------- a score=590.0 s hg17.chr17_random 463895 12 + 2618010 -GGCCGGTGGCCA s panTro1.chr19_random 57408027 12 - 57627672 -GGCCGGTGGCCA s mm5.chr11 238460 12 - 121648857 -GTTAGGCAGTCA s canFam1.chrUn 84720682 12 - 91062872 GACCAGGGAGCT- a score=184944.0 s hg17.chr17_random 463907 722 + 2618010 CCCCCAGCTCATGTGTGGAGAAAGACTCCT------CTCCAGTTGAGTGGGTGCTGCTTTCTGGACGACTCCCTCCCCGGTGTCAGCGT----GGGACACCCCAGGACTCCCGGCTGCAGTGGGACTGGAGTTGAGCT-GGGCCAGCTCTCCTGCGGTTTGCCCGTCCGAGCCTTTCCTCAGGCTCAGCACCTCCTTCCTGCACGTTCTGGTCAGTCATCTCTACGCCCATCACGAT-TTCTCAGTGTTTGCCCACCAGGGC-GCCTGTCAGCTGCAGGAGGCCAGCAAAGCCGCCCGGCCCCACGAGGCCTCGAG-GTCCTGGGCTCCTGGCT-GCCCCCACAATCCACGCTCATCCTTCACCCGCCTTTAATTTACTCCTGACACT-GGGGTCTTAAG-CCTCCGGCCT-CAGCCACCCTGCAGCTCCGAGCTCCACGGCAACCCCGAGCAGGTCCCTCGATACCAGGAGGACCCGAGAGTGGTGTCGGGAGTGGTGGCTGCTGTAGAGACAGCCTGTGGTCACCCAGCTGCCAGGATGCTGGCCAGAGTCTGGAG-TCGGCCTCCAGGGCTCACAGCACCTC-----AGCGTCCTG--CAAGCTGCNCNGCTGGCCTCAATCTCACCGAAGCTC-----GGAGCCGAAGCCCTTGC--CGGCCTCTGCAGCACCCGAGCCACCAAAGCTGCCGGGGCAGGCCCCTCCGAGCTCTGCCCAGCCCCCAGGACCAGGCACCGTCCCCTGAGCACA s panTro1.chr19_random 57408039 722 - 57627672 CCCCCAGCTCATGTGTGAAGAAAGACTCCC------CTCCAGGTGAGTGGGTGCTGCTTTCTGGACGACTCCCTCCCCGGTGTCAGCGT----GGGACACCCCAGGACTCCCGGCTGCAGTGGGATTGGAGTTGAGCT-GGGCCAGCTCTCCTGCGGTTTGCCCATCCAAGCCTTTCCTCAGGCTCAGCACCTCCTTCCTGCACGTTCTGGTCAGTCATCTCTACGCCCATCACGAT-TTCTCAGTGTTTGCCCACCGGGGC-GCCTGTCAGCTGCAGGAGGCCAGCAAAGCCGCCCGGCCCCATGAGGCCTCGAG-GTCCTGGGCTCCTGGCT-GCCCCCACAACCCACGCTCATCCTTCACCCGCCTTTAATTTACTCCTGACACT-GGGGTCTTAAG-CCTCTGGCCT-CAGCCACCCTGCAGCTCCGAGCTCCACGGCAACCCCGAGCAGGTCCCTCGATACCGGGAGGACCCGAGAGTGGTGTCGGGAGTGGTGGCTGCTGTAGAGACAGCCTGTGGTCACCCAGCTGCCAGGATGCTGGCCAGAGTCTGGAG-TCGGCCTCCAGGGCTCACAGCACCTC-----AGCGTCCTG--CAAGTTGCACCGCTGGCCTCAATCTCACCGAAGCTC-----AGAGCCGAAGCCCTTGC--CGGCCTCTGCAGCACTCGAGCCACCAAAGCTGCCGGGGCAGGCCCCTCCGAGCTCTGCCCAGCCCCCAGGACCAGGCACCATCCCCTGAGCACA s mm5.chr11 238496 635 - 121648857 CCCCCATCCCTTAAAAGGGACAAGACTCACTCTCATCTCTACCCTAGAGAATG---------AGACAGCTTCCCAGCCAGTGAGAGAATCCCAGAAAGAACCAGACACTAGCAACCACAGTGGCCATTGA----AGAA-GAGTCTGTATTCCTGCTATTTGCTTCTCTG---TTTTTCTCAGGCTTAGTGCCTCCTCTCT-CACGT--TAGTCAGCAGTCTGT-------TCCAGCT-TCCTTGGTATTTGCCCACCAGGAC-AGCTGTTGGTGGTAGGAGG-------------------------------------------------------CCCCATGCCACATGTTCATTCTTTGCCTGCCTTTAATTTACTTTTGACCCCAAAAGCCTTGAG-CCCCTGGCCTCCAGAGGCCTTGCAGCCCC-AGCTCCAGGGCAACCT--AGACAGTTCCTCAAACTAATGAGGATGCTGGAGAGG-GTTGTGAGCAGT-GCTGCCTTGGAGACAGCCTCAGA----CTAGTTGCCACGGTGCTG--TAAAGTCCTGGG--CAGCTGCCGGAGGATTTAGC------------CATCCT---CTAGCTATACT-CTGGCTACACTGTGGCTGCAGGGCACTGAAGAGATGAAAGGATCGCTGCAGACTCTGAAG--CCATAGCTACCAAAGCTG-CAGGACAGGCCCTTCCAGCTGCTGCTGGGTCAC--AGACC-TTTGCTGTCTCCCAAGCATG s rn3.chrUn 5881527 639 + 75822765 CCCCCATCTCTTAAAAGGGATAAGACCCAATCCCATCTCTACCCTACTGAATA---------AGACAGCTTCCCAGCCAGTGAGAGAATCCCAGGCAGGACCAGGCACTGGCAACCACAGTGGCCATTGG----AGAA-GAGTCTTTATTCCTGCTATTTGTGTCTCTG---CTTCTCTCAGGCTTAGTGCTTTCTCTCT-CACA---GAGTCAGCAGTCTTT---TCTATCTAGCT-TTCTTGGTGTTTGCCCACCAGGAC-AGCTGTTGGTGGTTGAAGG-------------------------------------------------------CCCCATGCCACATGTTCATTCTTTGCCTGCCTTTAATTTACTTTTGACCCCAAAAGCCGTGAGCCCCCTGGCCTCCAGAGGCCTTGCAGCCCC-AGCTCCAGGGCAACCT--AGACAGTTCCTCAAACTAATGAGGATGCTGGAGAGG-GTTGGGAGCAGT-GCTGCCGTGGAGACAGCCTCAGA----CCTGTTGCCAGGGTGCTG--TAGAGTCCTGGG--CAGCTGCTGGAGGATTTAGC------------CATCCT---CTAGCTGGCCT-CTGGCTACACTGTAGCTGCAGGGCACTGAAGAGATGAAAGGGACGCTGCAGACTCTGATG--CCATAGCTACCAAAGCTG-CAGGACAGGCCCTTCCAGCTGCTGCTGGGTCAC--AGACC-TTTGCTGTCTCCCAAGCATG s canFam1.chrUn 84720694 638 - 91062872 CCCGCAG---------GAGGCAGTGCCCAC--------CCCGGAGGGCGAGCG---------GTGCGGTTTCC-AGCCAGCGTG---------GGAAGCCCCCGGCCC--------------GGGCCCGAGCAGAGCTGGGGTCAGCTGGCCTGCTGTTTGCCCTCCGAAGCCTTTTCTCAGGCTTGCCGCCTTTTCTT--CCTGTT-TGGTCAACAATCCTCTTCCCCGTCACAATCTTCGTGGTGTTTGCCCACTGGGGCTGCCTGTCAGCTGTAAGAGGCTAACAAAGCCGCCTGGCCCCGTGAGGCCACCATCATCCAGGGGTCCCCGCTGGCCCCTGCATCGCACACTCATTCTTCACC-GCCTTTAATTTACTTCTGACATCAGGAGTCTGAAG-TCTCTGGCCT-CAGCCGCCCTGCGGGTCC-AGCTCCAGGGCAACCCCAAACAGGTCCCTCAAACTAATGAGGACTCTGGAGTGTCATCAGGAGGGGCCGCTGCCGTGGAGACAGCCCGTGGTCACCCAGTTACCACGGCACCGGGCAGGGTCCTGGGGTCGGCCACAGGAGGTTC--GCACCGTCTGGAAATATCCTGCTTTTGCTAAACT----GCCTTGTTGGCACAGAAGTCT-------GGACGGAGCCCCTGG-GCCGGCTCTGCAGCATCCGTGC-------------------AGCCTCGCC-------------------AGA--------TGTGCCCCGAGCGCA a score=13415.0 s hg17.chr17_random 464629 207 + 2618010 GAACAGATTCCCCCACAGGGCTGCAGGGAGAGGAAG--------------------------CTCAGGGCTGTGACTCCACCCACGGGAAGGATGTGC-TGGAGGAAG-GTGNNGGGGTGNNANCNGGTGGACCAAGTCCACCTCCATGGGCCCCGCGTCGCCTCCCCTCCCCTCCAGTC---CCGCCCAACTCAAACCTGCCTCACCTCAGACCCAACCACAGAGACCCCTCAGCCC- s panTro1.chr19_random 57408761 186 - 57627672 GAACAGATTCCCCCACAGGGCTGCAGGGAGAGGAAG--------------------------CTCAGGGCTGTGACTCCACCCACGGGAAGGATGTGC-TGGAGGAAGTGT---GGGGTGA----CGGTGGACC-AGTCCA-CTCCATGGG-CCCGCGTCGCCT-CCCTCCC------TCGGTCCGCCC-ACTC-AACCTG-CTCA-CTCAAACCCA--CACAG-GA-CCCTCAGCCC- s mm5.chr11 239131 191 - 121648857 TAA-ACATGTCTCATAAAAACTACAGGGAGGTGAAGGCTGGTGGCATCCTGGACCCTGGGTTCCTAGGGCAGCAACT----------AAAAGACCTG--TGTAGATAG-GT--------------TAGAGGATA-AATTAGCCATTGTGGA---GGCTCCACAT-TACTCC------------CCGCTG-ACTCTAACTTCCTTCTTCTCAGACCCA-TCACTCAGACCCCTCAGCTA- s rn3.chrUn 5882166 191 + 75822765 TAA-GCACGTCTCATAAAAACTACAGGGAGATGAAGGCCAGTGGCATCCTGGACTCTGGATTCTTAGGGCAGCAACT----------AAAAGACCTGTATGGATAGAC-----------------TAGGGGATA-AATCAGCTATTGTGGA---GACTCCACAT-TACTC-------------CCCCCG-ACCCTGACTTGCCTCTTCTCAGACCCA-TCACTCAGACTCCTCAGTTAC a score=2233.0 s hg17.chr17_random 464836 19 + 2618010 CTCCTGCCACCTAGCTGCC s mm5.chr11 239323 17 - 121648857 CTTCTGC--CCCACCTGCC s rn3.chrUn 5882357 17 + 75822765 CTTCTGA--CCCTCCTGCC a score=0.0 s hg17.chr17_random 464855 5 + 2618010 CATAG a score=0.0 s hg17.chr17_random 464855 5 + 2618010 CATAG a score=7534.0 s hg17.chr17_random 464860 82 + 2618010 CCAGGCCCCAATGGCCCCACTGCTGGCTCCTGTGAGGCTACCGCCCTCCCATATGGTGGCCCCTGTGGCACCCCAGCCCCTC s panTro1.chr19_random 57409065 82 - 57627672 CCAGGCCCCGATGGCCCCACTGCCAGCTCCTGTGAGGCCACCGCCCTCCCATATGGTGGCCCCTGTGGCACCCCAGCCCCTC s mm5.chr11 239340 57 - 121648857 CCAAGCCTTAGAG--CCTAAATCTGGTTCCCATGAAAGCA-------TTCAAATGG-------------ACACTAGCAC--- s rn3.chrUn 5882374 58 + 75822765 TCAAGTCTCAGAG-CCTAAGTTGGGGTTCCCATGAAAACA-------TTCAAATGG-------------ACACTAGCAG--- a score=26283.0 s hg17.chr17_random 464942 208 + 2618010 AGAGAGATGCTTTGAAACAGGAACCTGNAGAGG----AAAGGNCAGAGG----------------------------CTGCACAGCGC--------ANGGCCCAGCGAGGCCAAGAGACTTGTCCAAGATGGAGCGGCCTGAGGGTGCGGCCCCGGAGTGAACCGAGAAGCGTCTGA-GCACCAGGGCCAAGCTCGTGCCCCTCACTCTCCCCACC-GAGGGCATCGAAGGAGGCTGGGTGCCCACT---CAG s panTro1.chr19_random 57409147 208 - 57627672 AGAGAGATGCTTTGAAACAGGAACCTGGAGAGG----AAAGGGCAGAGG----------------------------CTGCACAGCGC--------AGGGCCCAGCAAGGCCAAGAGACTTGTCCAAGATGGAGCGGCCTGAGGGTGCGGCCCCGGAGTGAACCGAGAAGCGTCTGA-GCACCAGGGCCAAGCTCGTGCCCCTCACTCTCCCCACC-GAGGGCATCGAAGGAGGCTGGGTGCCCACT---CAG s mm5.chr11 239397 221 - 121648857 --AAAG---------AACAGGAAGCAGAAGAAGTTATACAGTGAAGGGGGACATACAACAGGTATCTACTTCCTGGCTTCCATGACGG--------A-GGACCAGAGAAACCAGTCAACTTGTTCAAAGGGGAACAGCTTGAGGGTG-GTACCTAGTATAAGCAGAGTCCTGTGTGACTTACCAAAGCC---------TCTCTAATTATCTCCCCCAGAAGACAGTTCAGAGGGT--GGTACTTACTGGGAGG s rn3.chrUn 5882432 223 + 75822765 --AAAG---------AACAGGAAGTAGAAGTTATAC-AGTGAAGAGGGG--CATACAATGGGTACCTA---------CTTCCTGGCTTCCATGACAAAGGACTAGAGAAACCAGAGGACTCAGCCAACGAGGAACAGCTTGAGGGTG-GTGCCTAGGATAAGCAGAGTCCTGTATGA-TTACCAAAACCAAGGTC---TCTCTGATGATCTCCCCCAGAAGACAACTCAGAGGGT--GGTGCTCACTGGGAGA s canFam1.chrUn 84721491 182 - 91062872 GGAGGGGTGC-----AACAGGGGGCTGCTGCGC----CCTGAGGAGGAG----------------------------CTGTCTTTACT--------GAGGCCCAG---AGCCAGGCAGCTTGTGTAAAATTAAAGAGCCTGGAATGGCAGCCTAGCGGCGAGCTGGGGACCGGCC---TTGCCAACGT----------------ACTGTCCCCATA-GAGAGTGTTTAAGGAGGCCAGCCGCTCGCC---CGG a score=21276.0 s hg17.chr17_random 465150 127 + 2618010 AAGAAAAATCGCAAGTCAGTCANCCCCCTGGGATGC-CGCCTCTGCCACCTGCCAGGTGTCCCACCACCCCACGCACACAACCCGCCACTTACACAGGAGGTGT---GAGTCCNTGGAGGCAGATCTGATT s panTro1.chr19_random 57409355 126 - 57627672 AAGAAAAATCGCAAGTCAGTCA-CCCCCTGGGATGC-CGCCTCTGCCACCTGCCAGGTGTCCTGCCGCCCCACGCACACAACCCGCCACTTACACAGGAGGTGT---GAGTCCATGGAGGCAGATCTGATT s mm5.chr11 239618 99 - 121648857 AAGGAAAATCTGAAGTTAGTCAACAAACTAGGATATGAACCTCTGAACCCTGGCAAGTGT--------------CACACTGTCCACCATT---------GATGT---------TTTTAGACAGGACTGATT s rn3.chrUn 5882655 108 + 75822765 GAGGAAAATCTAAAGTTCCTCAACAAACTAGAATATGAACCTCTGAACCCTGCCGAGTGC--------------CGCATTGCCCACCCCT---------GATGCTTTTAGTCTGCAGAGACAAGTCCAATT a score=-816.0 s hg17.chr17_random 465277 39 + 2618010 CTCCAAGGGACA----NCCGGGCCCTGT-------GCC-------------------------------------------------------------ACCAGCTCCAAG s panTro1.chr19_random 57409481 38 - 57627672 CTCCAAGGGACA-----CCGGGCCCTGT-------GCC-------------------------------------------------------------ACCAGCTCCAAG s mm5.chr11 239717 43 - 121648857 CCCCAAGGAACATGGAGCCAACCCTCAT-------ACC-------------------------------------------------------------TTAGGCACAAAG s rn3.chrUn 5882763 104 + 75822765 CCCCAAGGAACATGGAGCCTACCCCCAT-------ACCTTAAAAGCACAAAGACCCTCAAGGTCAAGGCATAGTGAGTGCTGCCATGGGGCTGTAACTGTCCAGGTCAAAG s canFam1.chrUn 84721872 46 - 91062872 CCCCAGGGCCCC----TTTGTGGCCTGTTGGAGCCGCC-------------------------------------------------------------TCCAGCCTCCGT a score=490.0 s hg17.chr17_random 465316 56 + 2618010 CAGTGTGGGC---------ACCTCGGGTCC----ATGCCTG-----GCTTTAGGCAGGTCGGCCAGCCGTACCC s panTro1.chr19_random 57409519 56 - 57627672 CAGTGTGGGC---------ACCTCGGGTCC----ATGCCTG-----GCTTTAGGCAGGTCGGCCAGCCGTACCC s rn3.chrUn 5882899 72 + 75822765 CAGTATGGGTGAGACAAAGATGCTGGGCCCTTTTGTGCCTGCCAGAGCTCCATCCA--TTGACCCTCCGTGGTG s canFam1.chrUn 84721918 46 - 91062872 CACCACTGGA---------ACTTTGG--------CAGTTTG-----TCATTGAGCAGG--GACAGAGCAT---- a score=68082.0 s hg17.chr17_random 465372 206 + 2618010 GGGAGCCACACAAGGGCTGTTTTCACCCATGGACTTCTAGCAAGCTCATCACGCAGCTCCTGACCCTGCAAGCTCTCTCCACCACTGGGAAGAACAAAATCACCAAAGTTGAAAAGTCTTTACCCACCACTTCCATACGTTTTGTGA--TTTTTAATGACACCGTGCAAACACTGGACAGGAGACCCGGTTCCAAGACAACCCAGCCT- s panTro1.chr19_random 57409575 206 - 57627672 GGGAGCCACACAAGGGCTGTTTTCACCCATGAACTTCTAGCAAGCTCATCACGCAGCTCCTGACCCTGCAAGCTCTCTCTACCATTGGGAAGAACAAAATCACCAAAGTTGAAAAGTCTTTACCCACCACTTCCATACGTTTTGTGA--TTTTCAATGACACCGTGCAAACACTGGACAGGAGACCCGGTTCCAAGACAACCCAGCCT- s mm5.chr11 239921 198 - 121648857 GGAAACCATGCCA-GGCCACCTGCTCCTCTGAACTGCTGGCCAGGATATAATACAGCACAGAGCCCT-CCAGCTCTCCTCACTGTTGGGAAGAAGACACATTTCAAACCTGAGAAGTCTTCTCTGA-GACTTTCATACATCTCATGT--TTTATGACAAAAC----AAGAGACTGAATGGAGAAATCGGGCCC-AGTCAGGCCTACCT- s rn3.chrUn 5882977 197 + 75822765 GGAAACCATGCCA-GGCCAGCTGATCCTTTGAACTGACGGCCAGGATATAGCACGACTCCCAGCCCC-CCACCTTTCCTCACTGCTGGGAAGAACACAAGTTTCAAGCCTGAGAAGTCTCTTCT-ACTACTCTCATACATCTCATGC--TTTTTGACAAAAC-----AGAGATTGAGTGGAGAAATCGGGCCC-AGTCAAGCCTATCC- s canFam1.chrUn 84721964 198 - 91062872 GGGAACCGTGCCA-GGGCCTCCTCACCCTGGAACTTCTAGCAAGTTCACGACACAGCTCATGACCCTGCAAGCTGTCCTCGCCACCGGGAAGAAG---------AAAGCTGAAAAGATTTTCTCCACCACTCTCATGCATTTTGTGATTTTTTTAGTGTCACCGTGCAAAAAATG-ACTGGGGCCTTGGGTCCAGGATAGCCCAGCCCT a score=27029.0 s hg17.chr17_random 465578 317 + 2618010 GGACGAGACTCGAGGCAACCATAAAAACCGTAGACCCTGAGGTTTGACTGCACCATC---GGCCCCTGTAAGATACACCCTGCTCCCCTCTGCG---ACGAGTCCTGGGCTGCTCCGGTGTTTCGACGACATCCGGCCCTGGCCCCACGCACC----AGAGACAGC----ACTTGCTTAAACCTAACACAAAGGG---TGGACGCTGGCACCTCCCTCTCCCTCAG--TGCTTCTGGGGGAGCACAAGCCCTCCCACCCACCACCCAACTCAAATTTCTTAGGGAGAA---AGGGTGGAAATTGCTGGAGATAATTACTGTGAGGCTT---TTTGGTTGGGG s panTro1.chr19_random 57409781 317 - 57627672 GGACGAGACTCGAGGCAACCATAAAAACCGTAGACCCTGAGGTTTGACTGCACCATC---GGCCCCTGTAAGATACACCCTGCTCCCCTCTGCG---ACGAATCCTGGGCTGCTCCGGTGTTTCGACGACATCCGGCCCTGGCCCCACGCACC----AGAGACAGC----ACTTGCTTAAACCTAACACAAAGGG---TGGACGCTGGCACCTCCCTCTCCCTCAG--TGCTTCTGGGGGAGCACAAGCCCTCCCACCCACCACCCAACTCAAATTTCTTAGGGAGAA---AGGGTGGAAATTCCTGGAGATAATTACTGTGAGGCTT---TTTGGTTGGGG s mm5.chr11 240121 295 - 121648857 GGGTGACCCTTGCCACAGTT-------CCCTGGGCCCAG-GGCTTGTCTCTACCACCAAAGGCCAATTTATG--CCTCCATGTCCTTCTCTGGGTTCATGAGTC--------CTCAGGCAT---GAGGATA--CTGACCTGGCTCACCACA-C----AGAGAAAGC----ACTGACTCTGACCCCAAGCAGAGGGGCAGGAAAGCAAGACCCTCCCTGCTTCT-GG--CTATCCTGGGT-----CCAGCACTACCACT--ACATTCACCTCA---TTTCCAAAGTGAATTCTGAGTGAGAA-TCCTTGAGGTGATTATT-TGGGGCATTAATTTGAAGAAGT s canFam1.chrUn 84722162 301 - 91062872 GAGTGAGACTTGGACAGACTCACAGAAATGCAGACCCTTGAGTTGGCCTAAGTCATC-CAGGCTCCTACAAAATACGCCAGGCTCCTC-CTGCACTCACACGTC---AGCTGCTCAGATATTCAAATTGTATCCAA--CTGGCCCCGGGGGCCCCAGAAAAGCAGCGTAGAGGGGCTTGGGTAGGAGGCTGAGG----TGGACCCTGGCCACCCCCTCAGCAGGAGGCCGCTTCCGATG-------------AGCACACACCACCTGTCCTGGGTGCCTGCGGGGGAA---AGGGTGGTCA-----GGACAAAACTGCAGCAAGGAAT---TGAGG------ a score=0.0 s hg17.chr17_random 465895 14 + 2618010 TTTTTGTTGGGGCA a score=2023.0 s hg17.chr17_random 465895 9 + 2618010 TTTTTGTTG s panTro1.chr19_random 57410098 9 - 57627672 TTTTTGTTG s mm5.chr11 240416 9 - 121648857 CTTCTGTTG a score=491.0 s hg17.chr17_random 465904 5 + 2618010 GGGCA s panTro1.chr19_random 57410107 5 - 57627672 GGGCA a score=11497.0 s hg17.chr17_random 465909 84 + 2618010 GGGGTACTGACTGAGACGAGAACTTTTCTTTTTGCTATCTCTTCCCTTCCCTAAACCCCTGTTGTGAATCAC-ACACATAAAAAA s panTro1.chr19_random 57410112 84 - 57627672 GGGGTACTGACTGAGACGAGAACTTTTCTTTTTGCTATCTCTTCCCTTCCCTAAACCCCTGTTGTGAATCAC-ACACATAAAAAA s canFam1.chrUn 84722463 68 - 91062872 GAGGCACTGACCGAGGAGGGG-----------------CTCTTGCCCTCTGCTAGCCCCCTCTGTGAGTCCCGACACACAAGGAA a score=71971.0 s hg17.chr17_random 465993 816 + 2618010 TGTGgccaggcgcagtgtctgacgcctgtaatcccagcactttgagaggccgaggcaagaggaccacctgagcccaagagttcaagacccacctgggaaataaagaaagaccccgtGCTGGCCgcgcggtggccatgcctggaatcccagcactgtgggaagctgaggcgggcggatcacgaggtcaggagataagaaaccaccctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagtggggcgtggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggacagtggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccaccgcactccagcctggacgacagagcgagactccgtctc-aaaaaTATATATATATATTGCCCCGGGACCCCACCTGTGGCCGCGTGGGTGGCTGTGCCTGTCCTGGGACCCCCGCGTGCTCCCGTGTGGTGCCTTTCTCTGGGCTTCACGCTTTGAGTCCGTCAGGGGCTCCATCCCTTGCTGTGGCCAAGAGGACTCCACCATATGGGTG-CCCAGCATGTCTGTGGGCGGCTGGTTTCCTCTGAGACACCCCGGCCTGGGCCCCTCTGTGCCCCCCACCACCAGCGGACCTGCCCCTTCAAGGAGGGTCGCGGGGTCCTGGTCCTGCGGACCGCAGCAGGGGGTACAGCACTGGCGTCTGTCTGTTTTCCAGAGGCTTGCGTGGCCCCTGGACACCCTTGTGTGCTCACGGCCAGCGTGAGGGAAACGCTGTGCTCGGCGGGACAGGCCAGACTCT s panTro1.chr19_random 57410196 811 - 57627672 TGTGgccaggcgcagcgtctgacgcctgtaatcccagcactttgagaggccgaggcaagaggaccacctgagcccaagagttcaagacccacctgggcaataaagagagaccccgtGTTGGCCAcgcggtggccatgcctggaatcccagcactgtgggaagctgaggtgggcggatcacaaggtcaggagataagaaaccaccctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagtggggcgtggtggtgggtgcctgtagtcccagctacttgggaggctgaggcaggacagtggcgtgaacccgggaggcagagcttgcagtgagccgagattgcgccactgcactccagcctggacaacagagcgagactccgtctcaaaaaaTATATATATATATTGCCCCGGGACCCCACCTGTGGCCGTGTGGGTGGCTGTGCCTGTCCTGGGACCCCCGTGTGCTCCCGTGTGGTGCCTTTCTCTGGGCTTCACGTTTTGAGTCCGTCAGGGGCTCCATCCCTTGCTGTGGCCAAGAGGACTCCACCATATGGGTGCCCCAGCATGTCTGTGGGCGGCTGGTTTCCTCTAAGACACCCCGGCCTGGGCCCCTCTGTGCCCCCCACCACCAGCGGACCTGCCCCTTCAGGGAGGGTTGCGG------GGCCCTGCAGGCCGCAGCA-GGGGTGCAGCACTGACATCGATCTGTTTTCCAGCAGCTTGCCTGGCCCCTGGACACCCTTGTGTGCTCATGGCCAGCGTGAGGGAAACGCTGTGCTCGGCGGGACAGGCCAGACTCT a score=14758.0 s hg17.chr17_random 466809 81 + 2618010 CCAATGAATAAAGGGCAAAAACTGCACTTAC------CTCAGCTATGCAGGAAAAAATCAGAGCAAAACCTTCCCAAAACAACTGCA s panTro1.chr19_random 57411007 81 - 57627672 CCAATGAATAAAGGGCAAAAACTGCACTTAC------CTCAGCTATGCAGGAAAAAATCAGAGCAAAACCTTCCCAAAACAACTGCA s canFam1.chrUn 84725251 85 - 91062872 CTGATGAGTAAAAGGCAAAAATTGTACGTATAATTTGTTCA--TTTGGGGCAAAAAATCAGAACAAAGTCTTCCCAAAATGAGTGCA a score=19770.0 s hg17.chr17_random 466890 207 + 2618010 GGGGCCACCCAGGCTCCCGAGGACACTTCCTACCTGAAAGCGTGTGAGGCTCCAGGCCTTTCGGGTGAGCCCTGGCCTGGACAATGGCCCCTGGACACCGGCCCTCCGGCAGGGAGAACAGGCTCGGGCACCCCACCCTGACGCCCTGGCCTAGGCCTCCCGAGGGAGCTGGGTGGGAAGCCCCTGAGCCACCGAATCAGCATTTCC s panTro1.chr19_random 57411088 207 - 57627672 GGGGCCACCCAGGCTCCCGAGGACACTTCCTACCTGAAAGCGTGTGAGGCTCCAGGCCTTTCGGGTGAGCCCTGGCCTGGACAATGGCCCCTGGACACCGGCCCTCCGGCAGGGAGAACAGGCTCGGGCACCCCACCCTGATGCCCTGGCCTAGGCCTCCCGAGGGAGCTGGGTGGGAAGCCCCTGAGCCTCCGAATCAGCATTTCC a score=35592.0 s hg17.chr17_random 467097 74 + 2618010 ATGTCAAAGGGT-CTTAGCCGTAGCCCCGGCTTCTGTCCCT-GTGATTTCATCCTGGGACTTCCTGGGCATCAAAG s panTro1.chr19_random 57411295 74 - 57627672 ATGTCAAAGGGT-CTTAGCCGTAGCCCCGGCTTCTGTCCCT-GTGATTTCATCCTGGGACTTCCTGGGCATCAAAG s mm5.chr11 242752 74 - 121648857 ATGTCAAATGCTAATTAGCAGCAA-GCCAGCTTCTGTCCCT-GGTTCATTATCATGAGACTTGCTAAGTTTCAAAG s rn3.chrUn 5885868 74 + 75822765 ATGTCAAATGCTAATTAGCAGCAA-GCCGGCTTCTTTCCCT-GACTCATTATCATGAGACTTCCTAAGTTTCAAAG s canFam1.chrUn 84725829 75 - 91062872 ATGTCAAATGGTAATTAGCAGCAG-ACCTGGCTCTGTCGCTGGTGATATTATCATCAGACTTCTTGGGTTTCAAAG a score=-2664.0 s hg17.chr17_random 467171 8 + 2618010 -----------------------------------------TGGGGCTG s panTro1.chr19_random 57411369 8 - 57627672 -----------------------------------------TGGGGCTG s rn3.chrUn 5885942 8 + 75822765 -----------------------------------------GAAGGCTG s canFam1.chrUn 84725904 48 - 91062872 TGAGCAGCCGACTTGAAACGGCAGCAGACTGGCCTCCGTGATGGGCCT- a score=18131.0 s hg17.chr17_random 467179 216 + 2618010 GAACAGGCCTGAGC-----TGAGCCCCCAGTGCCCAGAACAAGG------------TGGGAGGAGTCCCTGGCCTCAGGGCCTATGCAGAGGACAGCGGCCAGGGGACACCCTGGGC-CTCAG--CCCGTGTATGGCTAGTATGGCT----------------------------------------------------ACAGCCCCCCATTGTCCCTGGCCTGTCACACAGCCCCCCATTTCCCCTGGCCTGTCAC-TCAGGCCCCCCTGCCCCTAGGCCTCTGTCCT s panTro1.chr19_random 57411377 265 - 57627672 GAACAGGCCTGAGC-----TGAGCCCCCAGTGCCCAGAACAAGG------------TGGGAGGAGTCCCTGGCCTCAGGGCCTATGCAGAGGAGAGCGGCCAGGGGACACCCTGGGC-CTCAG--CCCGCGTATGGC---TATAGCTCTCCATTGTCCCTGGCCTGTCACACAGCCCCCCATTTCCCCTGGCCTGTCACACAGCCCCCCATTTCCCCTGGCCTGTCACACAGCCCCCCATTTCCCCTGGTCTGTCAC-TCAGGCCCCCCTGCCCCTAGGCCTCTGTCCT s canFam1.chrUn 84725952 204 - 91062872 GGTGGGGTTTGAACAGTCTGGGGCCCCAAATGCCCAGAGCTGGGGCAGCTGGGGCAGGGGGGAGGCCCCT----------CCTGTGGAGCCGGTGAGGCTCAGGGGCAGCACAGGGCTCTCAGGATCTGGAAGTGACCAGT----------------------------------------------------------GCGGTGCCTCTGGGCCCTCGGTCTGCTGCTGGGCCCCGCA---------------CACAGCAGACCCCC--GCCCCCGGGCCTCCACCCT a score=4311.0 s hg17.chr17_random 467395 45 + 2618010 GAGGTTACAGAGATTGGCATCCTGGCCTCTCAGGCTCCTGAATTC s panTro1.chr19_random 57411642 45 - 57627672 GAGGTTACAGAGATTGGCATCCTGGCCTCTCAGGCTCCTGAATTC a score=55275.0 s hg17.chr17_random 517440 725 + 2618010 GAATTCGTGCCTCTTTCTTCAACTCTCTCATTAATTTTATTACCCTTGGCAGTAAAATAATCTTACCAATTGCTCTCCCTATGAAATTGTGAATGAAAATTCCCATTTCTCTTTGCTAGGTCTTGTTAGCTGCCATCTCTGGGAAGGAGAAAGTGTTTTTATAGATAGGCATGGCAAGGACAAATAATGGAGCTGAAATGCAAGGGTggatggcaaataaattgcatcttgtgaactacctccaactaacttctgcctggagcactgtgtttaaaaggattcctaggccacatctggAGgga-tccgggaaaaaaaaaaacaaaagagatgtaacgaaggtaagcggagaaccagaaaagtgtagtgctacagtagcctagggtttcaaggaaaggagattataatatccagtcaggcagagcagcagtcaaacaacatgaagaaaaatgtccatgagactt-ggcatgtaggagatcactgatgtgcctattgacaagttcagtagcgttgtgag---ggaaaagtcaatgggctaaagcggaaatgagtgctgacacagagacagcaggtgtaaacCAG--AGACAGAGCCAGTGTACCggatggctga--agtcaaatacttacgtagcaaatggggatagagacacgtgtccgatggatgtattggccttctcaggacaaatattccatcccctgaaa---accacaggaaaggggtaaagaaggatactcct s panTro1.chr19 56085956 724 - 82489036 GAATTCATGCCTCTTTCTTCAACTCTCTCATTAATTTTATTATCCTTGGCAGTAAAATAATCTTACCAATTGCTTTCCATGTGAAATTGTGAATAAAATTTCCCATTTCTCTTTGCTAGGTCTTGTTAGCTGCCATCCCAGGGAAGGAGAAAGTGTTTTTATAGACAGTCATGTTGAGGACAAATAATGGAACTGAAATGCAAGGATggatggcaaataaattgcatcttgtgaattaactccaactaatttctgcctggagcactgtgtttaaaaggattcctaggccacatctggAGGGACTCTGG----AAAAAAAACAAAGGAGAAGTAAGAAAGGTAAGTGGAAAACCAGTAAAGTGTAGTGCTACCGTAGCCTAGGGTTTCAAGGAAAGGAGATTATAATATCAAGTGAGGCAGAGCAGCAGTCAAAAAACATGAAGAAAAATGTCCACGAGACCTGGGCATGCAGGAGATCACTGATGTGCCTATTGACAAGTTCAGTAGAGTTGTGAGAAAGG--AAGTTAATGGGCTAAAGCAGAAATGAGTGCTGACACAAGGATAGCGGGTGTAAACCAGAAAGACAGAGCCAGTGTACTGGATGGCTGAAGAGTCAAATACTTACATAGCAAATGGGGATAGAGACAAGTGTCAGATGGATGTATTGGCCTTCTCAGGACAAATACTCCATCCCCTAAAATCTATCA---GAAAGGGGT----AAGGATACTCCt a score=18801.0 s hg17.chr17_random 518165 209 + 2618010 ataggtcaatttacagaagagagcaaaaccttaaaattgtcaacgaagtaggagctaagaacctctgtatcaggtgaagagacaggaaggtcaagacggggaaggagaagatttgttaaagatgttgaagagaatgagagaactaaacagggctgggcaagc-aaaggcatcaggcaaggctgagtactcagatgaggttgaaattatgg s panTro1.chr19 45749385 210 - 82489036 ATAGGTCAATTTATAGAAGAGAGCAAAACCTTAAAATTGTCAACGAAGTAGGAGCTAAGAACCTCTGTATCAGGTGAAGAGACAGGAAGGTCAAGACGGGGAAGGAGAAGATTTGCTAAAGATGTTGAAGAGAATGAGAGAACTAAACAGGGCTGGGCGAGCAAAAGGCATCAGGCAAGGCTGAGTACTCAGATGAGGTTGAAATTATGT a score=68852.0 s hg17.chr17_random 518374 905 + 2618010 aatagttacattaaaacagggttaatctgtatgaccaggtgctttttctttagccttcagatacagaagtagaacaacagactgtggattgggctggcattttgccaggatacagcaggaagac--gggcacaggaaaggcccaatgttgggagtatttccattaatctcctatgagatccaggctggctagggtagcaaggcaggttataagaagaaaaatacagacaaactcgtgagactgcagaggcttggaagGAGAAAATGTGTTGGGTGACAGTGAGATGCAGAAGATTTCTAAGGTGATACACCTGCAGAGGAGAAGGTGGAGGTCCCAGCCCGGGGAAAAGGTGGCTAATCTGCCCCTGGTGATGACCACTGGCATTAAAGGAATCCAGAAGAGATGAGGCTTTTTCTGTTTGTGGAAGTTATCTCCTTGTCCAAGTTTCTCTTCACCACTGAAAACCTCTGAAAGTTGTCAACTTCATTAAGGTAGATTCAGAAGAC----CTTTTGATTCAAAATGACAAAATGCTTCTAGAGAAAAAGCAC-ATATGTCTGGTCAGATAATGCGTGTATGACTTCGGACAAATCATAGCATTTCAGTGTTTGAGGTAATCTAGTCTGTCTGTCCTCTTTATTCCTTAACTCTCCATCTGTACAGACAGAAACAATGTAATCAGCCACATAACTTGTATAAAATAAATATGAGGAGAGAACCAATTATGAAGGCAGAAGTTCTTGGGGTGAGGGGAAGAATTTTAAAATACAAAATTAACTAGCTACTTCTTCAAGAAGAAAAATATCAGGGAGTACTGAAAGAGAACAATTGCAGAAAGGAAGAGAAATTAACTTGAACAGCAACCAAAAACCTTCTAAGAATGTATCAACAGTCCAGTGGAAAACAAATa s panTro1.chr19 56096569 910 - 82489036 AATAGTTACTTTAAAACAGAGTTAATCTGTATGACGGGTTGATTTTTCTTTAGCCCTCACATACAGAAGTAGAACAATAGACTGTGGATTAGGTTGGCATTTTACCAGGGTACAGCAGGAAAACAGGGGCACAGGAATGACCCAATGTTGGGAGTATTTCAGTTAATCTTCTATGAGATCCAGGCTGGCTAGGGTAGGAAGGTAAGTTATAAGAAGAAAAATAGAGACAAACTCATGAGACTGCAGAGCCTTGGAAGGAGAAAATGTGTTGAGTGACAGTGAAACGCAGAAGATTTTTAAGGTGATAGAACTGTAGATGAGAAGGTGGAGGTCCCAGCTCTGGTGAAGGGTGGTTAACCTGTACCTGGTGATGACTACTGGCATTAAAGGAATCCAGAAGAGATGAGGCTCTTTCTGTTTGTGTAAGTTATCTCCTTATCCAAGTTTCTCTTCACCACTGAAAACCTCTGAAAGTTGTCAGCTTCATTAAGGTAAATACAGAAGACGTAGTTTTT--TTCATAATGACAAAATGCTTCTACAGAAAAAGCACCATATGCCTGGTCAGATAATGAATGTATGGCTTGGGACAAATCATAGCATTTCAGTGTTTGAGGTAATCTAGTCTGTCTGTCCTTTTTATTCCTTAATTCTCCATCTGTAAAGACAGCAACAATATAATCAGCCATCTATCTTGTATAAAATAAATATGAAGAGAGAAATGATTATAAAGGCAGAAGTTCTTGGGGTGAGGTTAAGAACTTTAAAATACAAAATTAACTAGATACTTTTCCAAGAAGAAAAATATAAGGGAGAGCTGAAAGAGAACAGTTGTAGAAAGGAAGAGAAAATAATCTAAACAGCAATGAAAAAATCTCTAAGAATGTATCAACAGTCCAGTGAAAAACAAATA a score=491.0 s hg17.chr17_random 519279 5 + 2618010 cccac s panTro1.chr19_random 41322408 5 + 57627672 cccac a score=44255.0 s hg17.chr17_random 519284 289 + 2618010 cctgatgacaccttgatcttggacccatggcctccagtactgtgagacagtaacattctgttgctgaaggtgcccagtctgtggtact---gtaaaacagccctaggaaactaacacaGCCTGTTAGCCCACAGATGGTGGAGAGAAGGAATGCTCAGTGGAGCTCCAGGCTTACTGTCTACAGCTCCCAAAGTGTGCTACGGGACCCTTGGATGGGTGTAGGTATGCAAGATAATTTTGGGTGGTGCAGGGTGAATAATTTCAATTGACATAAAAATGTGTTTCTTTTACT s panTro1.chr19_random 41322413 289 + 57627672 cttgctgacaccttgatcttggactcatggcctccagtactgtgagacagtaacattctgttgttgaaggtgcccagtctgtggtact---gtaaagcagccctgggaaactaacacaGCCTGTTAGCCCACAGATGGTGGAGAGATGGAATGCTCCGTGGAGCTCCAGGCTTACTGTCTGCAGCCCCCAAAGTGTGCTACGGGACCCTTGGGTGGGTGTAGGTATGCAAGGTAATTTGGGGTAGTTCAAGGTGAAGAATTTCAATGGACTTAATAATGTATTTATCTTGCT s canFam1.chr5 46598167 278 - 92064832 cctgctggcaccttgattccagatggcacacctggagaagtggggaacagcgactttcgcct--ttagactacccagtgtgtgctactttgttacagctgcctcaggaagcCGGGACAGCCTGTTAGCCCTTGGAGGGTGGACAGA------------TGGAGCATCAGGCACCCTGTCTACACCTCCCAAAGTGTGTTATGTGAACCTCTGGTGCACGTAGCTGTGCAAGGTAATGTTGGGTGGCACAGGATGAATCATTTTAATTTACACAATTGTGTATTTCTCTTACT a score=38134.0 s hg17.chr17_random 519573 501 + 2618010 GGGTAAATCAGGGGTCCCCAcctgttaggaaccaggctgcacagcaggaggtgagcagccagccagggagcaaagcttcatctgtagaaacag-ccgctccccatccctcgcattaccgcgtgagctctgccacctgtcaaatgagtggtgccgttccattctcata--------gaacccaactgtgaactgagcatgccagggatctagattgcatgctccttatgagaacctagtgcctgatgacctgtgactgtctcccatcacctcctgatgggaccatgtagttgcaggaaaacaagttcagggctcccactgattctatgttatggtgagttgtgtaattatttcattatatattacagtgaaataatcatagaaataaagcacacaataaatgtaatgggctcgaatcatctctgcaccatcccttccccttctcccaggtccgtggaagagttgtcttcaagaaaactgctctctggtgccaaaaagtttggggaccgctg s panTro1.chr19_random 41322702 504 + 57627672 GGGTAAATGAGGGATCCCCAActgttaggaaccaggctacacagcaggaggtgagaagccagccagtgagcaaagcttcatctgtagaaacagcccacttcccatcccttgcattaccacgtgagctgtgcctcctctcagatgagcggtgccatt---atctcataggagccgtgaaccctactgtgaactgcgcatgccagggatctagattgcgtgctccttatgagaacctaatgcctgatgatctgtgactgtctcccatcacccccagatggaaccatgtagttgcaggaaaactagctcagggctcccactgattccacattatggtgagttgtgtaattatttcattatatattacagtgaaata---atagaaatgaagcacacaataaatgtaatgggcttgaatcatctccacatcatcccttccccttctcccgggtccgtggaagaattgtcttcaagaaaactggtctcaggtagcaaaaaggttgggaaccgctA a score=1146.0 s hg17.chr17_random 520074 4 + 2618010 GTGT s panTro1.chr19_random 41323206 4 + 57627672 GTGT s canFam1.chr5 46598445 4 - 92064832 GTGT a score=9920.0 s hg17.chr17_random 520078 227 + 2618010 AAATGTTTCTAGGAATAGTT--AAGCAACTTAAGCTTCACATGCTACGAAGAATACAGCTTTAAATGCTAATAAAAATAGG---------------TGCAAATG----------AAAACACTCTTT--CTGTGGTC---------------CAGGGAATCTTAACCATTCTATCAGA---------------------------------AAGACTTGCAGCTTGG-----------AGCTGCAGCTGC------------------------------------------------------------------------------CCTCCCACATCCTGTCCACTGTAAAGCCCTGCAac------acacacat------------------acacgcacacacacacacacaca s panTro1.chr19_random 41323210 252 + 57627672 AAATGCTTCAAGAAATAGTT--AAGCAGCTTAAGGTTTACATGCTACAAAAAGTACAGGTTCAAACGCTAATAAAAATGGG---------------TGCAAATG----------AAAACACTCTCTTGCTGTGGTC---------------CAAGGAGTTTTAAGCATTCTATCAGA---------------------------------AAGACTTGCAGCTTGG-----------AGCTGCAGCTGC------------------------------------------------------------------------------CCTCCCACATCCTGTCCACTGT-AACCCCTGCAacacacaaacacacatatgcacacacgtgtgcgcacacacacaaacacacacacaca s mm5.chr11 60888004 219 - 121648857 AAATGCTTCTGAGAGTATTTTCATGCACCTGGAAGTTT----------TAAGAGATAAGCACAGGTGCCCATAAAAAGTGA---------------TGCAATTG----------AACAGACTCTTG--CTGAGGTC---------------AAGGTAAC----ACCCATCACCTAGA--------------------------TGGTTTTTAGATGTTTGGCCTTC-----------ACCTAGAAGGGC------------------------------------------------------------------------------CCT----CATCTTTCTGGCTAT--ACCACATCAGC---CAGACACATAT------------------GTACACACACATCTGCATGCACA s canFam1.chr5 46598449 385 - 92064832 AAATGCTTCTAAGAATCATT--ATGCATTTTCAGTGCCAC--------TGAAATATAGATTTCAATGCTACTACAAATAGAAAATATAGGTAACATTGAAAATGTGTGGATGCTCAGATATTCTTA--GTGTTATCACTTATAAAATTCAGCATGAGATTAAAGTAGGGCTAGAAGAAAAGGGGAGTTAATATAAAGAATATTAAGCCATGAGACGTGCAGGTTGGTAGCTAGGTGAGGCCAAAGGTGCCTGCAAATGAGAAGGCTCCTGGGGAGGGGGGCAGGCAAAGAGCCTCGGGCTCAGAGCAGCTTGGCGCCCTGGGCTCAGCCTGCACCTTCCTGTCCACCCC-TAGCCCA-CTacacacacacacacac------------------acagatgcacacacacacacaca a score=4346.0 s hg17.chr17_random 520305 38 + 2618010 cacGCTG-----TGCTTCATGCCCTCACTAGGGTGGCCTGGGA s panTro1.chr19_random 41323462 38 + 57627672 cacGCTG-----TGCTTCATGCCCTCACTTGGGTGGCCTGGGA s canFam1.chr5 46598834 41 - 92064832 cacGTTGCACCATGCTTCA--CCATGCCTAAGGAGGCACAGTG a score=47158.0 s hg17.chr17_random 520343 569 + 2618010 GGAAATGCGTGTTTTTAGGAGAAATGAAGACAACTCAGGCCCCTCATTCTCCTGGTGTTTGCACAAGTGCCTTCTCTGCAGACCATGCTTCAGCCTCTTTCTTGGTTCTCCCTCTT-ACTGAAAGAGAGAAGCAGAGGCCCGGCACATACTCGGCTGCTTAGGGCTCAAGCCAAGTTCGCAAGCTTCCTGGG----GAGCCTAGTGAGATGAAGGCACT-GCAGAGCCTCCCCAAAAGAGTCGTCGGC-TTTTCGTGGATCCTTGAGCCCAGGAAGGC------GATAGGTGAGACATCACAGTTCATC----AGAAGACACGAGCAAACTCCGGCGAGAAAGGGCAACGGTCA-------AAGATTTTATTCTCT-CGGAAAAGGGTTCTC-GGGCTGTAAGCAGCAGGCA--GAAGACTTTATTGCACGCGTAGTTAGGTGATGGCGACCTACGGTTTTCACTGGGGACTGGGATCGAGA--GTGACCCGACCTCCTACTCATGCTCGtctctccctgtctctctctttgccttttgtgtctctctgcctgtctctctcgctccttttcctctcagcctcctctgtctctctcctta s panTro1.chr19_random 41323827 559 + 57627672 GGGAATGCATGCTTTTAGGAGAAACGAAGACAACTCAGGCCCCTCATTCTCCTGGTGTTTGCACAAGTGCCTTCTCCACAGACCATGCTTCAGTCTCTTTCTTAGATCTCCTTCTT-ACTGAAAGAGAGAAGCAGAGTCCCATCATGTACCCAGCTGCTTGGGGCCCAAGCCAAGTGTGCAAGCTTCCTGGG----GAGCCTAGTGAGTGGAAGGCACT-GCAGACCCTCCCCAAAGAAG-CATCAGT-TTTTGATGGATCCTTGAGCCCAGGAAGGC------AATAGACAAGACATCATGGTTCACC----AGAAGAGACAACAAAAATGCGGTGAGGAAGGGCAGTAGTCA-------AAGGTTTTATGCTCCACGAGAAGGGGTTCTCAGGGCTCTAAGCAGCAGGC-----TGACTTTATTACATGTGTAGTTAGGTGATGGCGACCTACAGTTTTCACTGGGAACTGGGATCAAGA--GTAACTCGACCTCCTACTCCTGCACGtctctctctgtctc------tgtgttttgtatctctctccccatctcacc--ctccttatcctctcagcctcctctgtctctctccaaa s canFam1.chr5 46598875 534 - 92064832 GGGACTTTGT-TTCAGAAAAGAAATGCAGGTGTGCCCAGCCCTCC--------------TGTAGAGGCAC-------ACTGGCTTCGCTCCATCCT-----TTGGCTTTCCCTCTTAAAAGAAAGCGCACAGCAGAGTCCCGT-GTGTGCTC-GCTGCCTCCCACCGGCACC-GGTCACCGAGCTCGGCGGGTCCTGAGCCTGGTGGGGACCGTCAACTCGCAGGTCTTCGGAAACCAGG-CGGCTGCGCTGCGGTGGAGCCTTGAGCCCAGGGAGGCGAGCGGGAGAGGTGGGACCTCCAGAGTCACCGCAGGGGAGACACGACCGAAA-GCAGGGATAGGGAGGAGTGGGCAGCCCGAGAAGGTTTTATT-TCT-AAGGAAGGGCTCCTGGGGGCTGAGTCCGGCAGGCAAGGATGACTTCACTGCAGGTATG--CAGG-GGTGGTGACCTGCAGTGGACACG------TGGGATAAAGACGGTGAC-CGACCTGTTCCC------CGCCTCCCTCCGCATCTCTCT------------TCCCTCCCCCTGTCTCAAccctccccttccctctccaccctccc---ctccctcccca a score=2518.0 s hg17.chr17_random 520912 91 + 2618010 tctctcatcctctctctatctcac--tcccttctccccatctctctttctctctccttctTTTCCACTTCTCTCACCCTCCTCATCTCTCTGC s panTro1.chr19_random 41324386 87 + 57627672 tctctcttcctc------tctcactttcccttctcctcatctctctttctctctccttcttttccagttctctctccctcctcatctcgctGC s mm5.chr11 60888585 87 - 121648857 TCCTTTATCGTGTCTTCATCTGTCTCTTCTCCATCCCTTTCCCCCTCTGTCACTCCATCCTCTAAA------TTGTCTTTTTTATTTTTCGGG s canFam1.chr5 46599409 51 - 92064832 ----------------------------cctcttccccctccgcc-----ccAGCCGTCCCCCAGG-----CTCACCCTGCCCGCGTCG---- a score=30486.0 s hg17.chr17_random 521003 256 + 2618010 CTGCCACTGTTCAGGCTCCTGGG--------GCCCCACGTGGATGGGCGGACACAGGACTCCTAGGCTACCTTTCATAGCGCAAGCAGAGGGCTGCAGGACCTTGGT---------------CCCCACCTCCCAGCATCCTCAAAATGAGGGGTGTGGGGTGTG-CCGTGCTCTCCTGAGTGGGCGCCCCACACTCCAGGAAGCA----GAAACTGCAGGTCACAGCTGGCTCGAGTG-----GTGCCCACGGGGCTGCCAGCTTCC--ATCGTGTGATCTGCTGAGGCCA s panTro1.chr19_random 41324473 260 + 57627672 ATGCCACTGTTCACGCTCCTGGG--------GCTCCACGTGGACAGGTGGACATGGGACTCCTAGGCTAATTTTCACGGCACAAGCACAGGGCTGCAGGACCTTGGT--------------CCCCCACCTCCCAGCACCCTCAAAATGAGAGGTGTGGGGTGTGCCCGTGCTCTCCTGGGTGGGCGTCCCACGCTCCAGGAAGCA----GAAACTGCAGGACAAAGCTGGCGCAAGTG---ACATGCCCACGTGGCTGCCGGCTTCC--ATCTTGGGATCTGCTGAGGCCA s mm5.chr11 60888672 242 - 121648857 CTG-------TCAAGTTGCCGGA---CGAGCGTCCCCAGTGGATGCGCG----CAGGACACCCAGGCCGCCTACTGTTGCACGCATACAGGGCTGCGGGGCGGCAGT---------------GCCCGCGAAGCCGTGTATCCCGAGCGA----------ACGCG-GCGCGCTCTCCTGAGTGGGAGAACTGCGCTCCGGGAAGCA----GAAGCTACACGTTTCCACAGGCTGGGGTG---ACGCGGTCACCTCGTCGCAAGCCTCT--GTCACGGGGCCTGCAGTGACAA s canFam1.chr5 46599460 264 - 92064832 ----------TCAGGCAGCGGGG-------CCTCCCTCCTGGGCGGGGGCGCACAGGACCTCGAggccgcggtccggggcgcgcgcgcagggccgagcgggggcgctgag--gccgaggagcccgcgccggcccgagggcgccgtgtcgggggtcccgggcgcgcccgcgcTCTCCTGGGTGGGCTGCCTGCGCTCCGGGAAGCA----GAAGCTGCACGTCTCCACCGGCTCTGGCGGCGACGCGCCCGTGGCGCTCCCCGCTTCC--ATCCAGTGATCTGCGGGAAG-- s danRer1.chrUn 44324342 284 - 367113659 CTGACACTA-GCAAGCTCCCAGGGGTCCACCTCTCTCACTGGACTTGCAG---TAGAGGCCCCAGGTTGCCCCCTGGCCCTCCACCTAGGGGCCTC-TGACCCCAGCAAGCTACCCAGGGGTCCACCTCTCTCACTGGACTTGCAGTAGAGGCCCCAGGGTGCC-CCCTGGCCCCCTGCCTAGGGGCTTCTAACCCCAGCAAGCAACCCAGGGGTTCACCTCTCTCCCTGGACTTGCAGTAAAATCCCCAGGGTGCCCCCTGATTCTCGACCTAGGGGCCT-CTGACCCCA a score=0.0 s hg17.chr17_random 521259 8 + 2618010 AAGCAGAG a score=273.0 s hg17.chr17_random 521259 1 + 2618010 A s panTro1.chr19_random 41324733 1 + 57627672 A s mm5.chr11 60888914 1 - 121648857 A a score=1531.0 s hg17.chr17_random 521260 7 + 2618010 AGCAGAG s panTro1.chr19_random 41324734 7 + 57627672 AGCAGAG s canFam1.chr5 46599724 7 - 92064832 GGCGGAG a score=-1636.0 s hg17.chr17_random 521267 5 + 2618010 GACA---G- s panTro1.chr19_random 41324741 8 + 57627672 GACACCTG- s canFam1.chr5 46599731 5 - 92064832 GGCG---A- s danRer1.chrUn 44324626 5 - 367113659 -GCA---AG a score=-1103.0 s hg17.chr17_random 521272 22 + 2618010 CAGCCCAGGCCCA-TCTCTGCAG s panTro1.chr19_random 41324749 19 + 57627672 C--CCCAGACCGA--CCCTGCAC s canFam1.chr5 46599736 13 - 92064832 TGGCCTTGGCCTT---------- s danRer1.chrUn 253941026 23 + 367113659 CAGCCCAGCTCCTTTCCCTGCCG a score=3569.0 s hg17.chr17_random 521294 45 + 2618010 CAgggtgggggtaggggtgggcttgggggtggggatggggatggg s panTro1.chr19_random 41324768 45 + 57627672 CAgggtaggggtaggggtgggtttgggggtgggaagggcgatggg a score=1888.0 s hg17.chr17_random 521339 135 + 2618010 AGCCGCCAATGCAAACTGGCCCCTGGCTGGTTTCCTACCCTG---------------CACCCTGCCATGCAAG--------TCCTACCCCTACCCCTACCCCTGTCTGCCCCACCTCCACCC--CTAGGCTGCCCCACACCCAGGCTCCAGAAGTCTCCC s panTro1.chr19_random 41324813 137 + 57627672 agCAGCCACTGCAAAGCAGTCCCTGGCTGGCTTCCTGCCCCA---------------CACCCTGCCATGCGAGGCCTCTCCTCCCGCCCCCAGCCCTGCCCCT-----CACCACCTCCACCC--CTAGGCTG-TCCAGATCCAGGCTCCAGAAGTCTCCT s canFam1.chr5 46599749 81 - 92064832 -----------------GGCCCCCGCCCG------TCCTCAG---------------CGCCCTG-----------------------------CCCTGCCCCA-----GGGGACCCGCGGCCGGCTGGGCTGTCGGCCAGTTGGGCTCC-----CCGC-- s danRer1.chrUn 253941058 146 + 367113659 AGACGTCAAGCCCTGCCGGCCCCAGCCCGGTTCCTTGCCCTGCCGGCACCAACCAGACGTCTTGCCCTGCCGG--------------CCCCAGCCCGGCTCTTTTCCCTGCCGGCCCCAACCAGACGTCTTGCCCTGCCGGCGCACCCCAGACGTCTTGC a score=0.0 s hg17.chr17_random 521474 5 + 2618010 AGGAT a score=191.0 s hg17.chr17_random 521474 2 + 2618010 AG s panTro1.chr19_random 41324950 2 + 57627672 AG a score=1213.0 s hg17.chr17_random 521476 3 + 2618010 GAT s panTro1.chr19_random 41324952 3 + 57627672 GAT s mm5.chr11 60888945 3 - 121648857 GGT s canFam1.chr5 46599830 3 - 92064832 GGT a score=-8704.0 s hg17.chr17_random 521479 104 + 2618010 CCAG--GAACTAAGGGCAGCCTCTGGGTTCCATAGCCCC----TAGTCCATGAGTCAGCCACCCCTCTGCGTGCTGACAAACCTTGGCT----CTCATGCCCCACCCCAAGCCA s panTro1.chr19_random 41324955 108 + 57627672 CCAA--GAACTAAGGGCAACCACTGGGCTCCGCAGCCCC----TAGTCCATGAGTCAGCCACCCCTCTGCATGCTGACAAACCTTGGCTGTCACTTATCCTCCACCCCAAACCA s mm5.chr11 60888948 74 - 121648857 CCAG--GAGCCCAGCGC----------TTCTACAGCCAC-------CCCAGGACT----TGCCCTTCTGAGCGCCCCTGAACA--GGTT----TTCACGGCCG----------- s canFam1.chr5 46599833 78 - 92064832 CAGC--GGACTGCCGGC----------TCGCCCACTCCC----CAGC------GCCAGCTGCCTTTCTGC-TGGGAAGGAACA--GGTTTCGCCCCTTGGCCG----------- s danRer1.chrUn 253941204 99 + 367113659 CCAGCCGGCCCCAGCCCGGCTCCTAGCCCCTCCGGCTCCCCTCTGGTCTTCAGCCCCTCCGGCTCCCCTCTTGTCTTCAGCCC----------CCTCCGGCTCCCCTCT----- a score=-247.0 s hg17.chr17_random 521583 15 + 2618010 AGCACACAGCCCTGC s mm5.chr11 60889022 13 - 121648857 GGCTCAC--TTCTCC s canFam1.chr5 46599911 11 - 92064832 --ACCAC--CCCTAG s danRer1.chrUn 253941303 15 + 367113659 GGTCTTCAGCCCTGC a score=-4337.0 s hg17.chr17_random 521598 121 + 2618010 CCCCCCAC----------CAGCATTATCACCGCCTC-CTGATTTT-GGCCCTGACAGCCCTGCTTCCTGGTAACCTTGCCCCCTCCCACCCTGCTCCAGGCAAGCC-------CAAAGGCCAG-GCCCTCCACCCACCCTT s panTro1.chr19_random 41325330 122 + 57627672 CCCCCCAC----------CAGCATTACCACCTCCTC-CTAAACAT-AGTCCTGAGAGCTCTATTTCCTGGTAAACTTCCCCCTTCCCACCCTGGTCCAGAGAAGCC-------CAAAGGCCAGTGCCCTCCACCCATGCTT s mm5.chr11 60889035 91 - 121648857 CCGCACCC----------CGAAACCATC--------------------------CAGCCCTCGCCCCGGGGTAAC---CCGCTTCCCGATCTCCTCTCA--AAGCT-------GAA--GCAAGAACCTGACACCCACCCTT s canFam1.chr5 46599922 88 - 92064832 --GCCCCC----------CAGGGGGACCACCTCCTC-CAGGTTT----------CAGCCC---------GGAAGC--------------CCTGTGCGGGGCCAAGC-------CGGCGGCCGGCAGCCCACATCCACGCTT s danRer1.chrUn 253941318 132 + 367113659 CCGCTCCCCTCTGGTCTTCAGCCCTGCCGGCTCCCCTCTGGTCTTCAGCCCCGCCGGCTC--CCCTCTGGT-------CTTCAGTCCCGCCGGCTTTAGTTAAGTCGCCTCTAGACCAGCCGGCTCCCCACAGGCCTTCAT a score=-303.0 s hg17.chr17_random 521719 6 + 2618010 CCTGGG- s canFam1.chr5 46600010 6 - 92064832 CCTCAG- s danRer1.chrUn 253941450 6 + 367113659 -CCCGGC a score=1437.0 s hg17.chr17_random 521719 6 + 2618010 CCTGGG s panTro1.chr19_random 41325452 6 + 57627672 CCTGGG s canFam1.chr5 46600010 6 - 92064832 CCTCAG s danRer1.chrUn 253941450 6 + 367113659 CCCGGC a score=-7.0 s hg17.chr17_random 521725 13 + 2618010 GGCCACTCTACTA s danRer1.chrUn 253941456 13 + 367113659 CAGCTCCCTACAG a score=777.0 s hg17.chr17_random 521725 12 + 2618010 GGCCACTCTACT s panTro1.chr19_random 41325458 12 + 57627672 GTACACTCTACT s danRer1.chrUn 253941456 12 + 367113659 CAGCTCCCTACA a score=77.0 s hg17.chr17_random 521725 20 + 2618010 GGCCACTCTACTATCTCCTT s danRer1.chrUn 253941456 20 + 367113659 CAGCTCCCTACAGGCCTCCT a score=91.0 s hg17.chr17_random 521737 1 + 2618010 A s panTro1.chr19 56127697 1 - 82489036 A a score=629.0 s hg17.chr17_random 521738 7 + 2618010 -TCTCCTT s panTro1.chr19 56127698 7 - 82489036 -TCTGCTT s mm5.chr11 60889126 7 - 121648857 -TCTTCTG s danRer1.chrUn 253941469 7 + 367113659 GCCTCCT- a score=6245.0 s hg17.chr17_random 521745 32 + 2618010 GCCCAGATGTCTTAACCTGGCTTTACCAAGAT s panTro1.chr19 56127705 32 - 82489036 GCCCAGATGTCTTAACCTGGCTTTAGGAAGAT s mm5.chr11 60889133 32 - 121648857 GCCCCACTGTTTGAACCTGATTTCATTAAGGT s canFam1.chr5 46600016 28 - 92064832 GTCTTGATGT---GAACTGATCTCACC-AGAC s danRer1.chrUn 253941476 32 + 367113659 GCCTTGCTATCCCAGGCCGATCCTCCTTGGGT a score=42389.0 s hg17.chr17_random 521777 323 + 2618010 AGAATAAATA--ACAGGGATGAGGCCCCGGACCCCGC------CAGGAAGATGTGCCAAAATACCCTCCA-TTTAGAAGC--GGGAACAGTGATGG--GGCCTATGGATGACCCCAG-----GA----TTGTCACCCAAGCAGCAAGAAGGGCAAGGAGCCCGGTTTCCTGCCCTTA--C-CTGGGGAGGACGTGGCCAGGGCT----------CCAAAAGGCCCTGGAG--------AGGGGTG------GGCAGGAGAGCAGATCCACCCTCCTCTTGAGGAAGCA-GCCACCATCCCCAGGAAG-AGCAGATGGGGGCACACAGGCAGAGTCCCCACGTGCTGTAGAGCAGGGCCAGCAGAACTGTACTCA s panTro1.chr19 56127737 339 - 82489036 AGAACAGATA--ACAGGGATGAGGCCCCGG------CTTTTCCCAGGAAGATTTGGCAATACACTCTTTA-TTTAGAAGCATGGG--CAGTGACAG--GACCTAGGGATGACT---------GAGGGCTTGTCACCTAAACAGCAAGAAGAGCAAGGAGCCTGGTTTTATGCCTTCAAGC-CTGGG-AGGACGTGGCCAGGGCT----------CCACAAGGCCCTGGAGTTGGGGGAGGGGGTGTGTGCTGGCGGGAGAGCAGATCCACCCTCCTCTTGAGGAAGCA-GCCACTACCCCCAGGAAGCAGCAATTCGGGGCACACAGGCAGAGTCCCCGCGTGCTGTAGAGCAGGGCCAGCAGATCTGCACTCA s mm5.chr11 60889165 303 - 121648857 GCTAT----------GGGATGTGCCCCAGG------C------CACGCCGGTGGGCTCAGAGTGTGTCCACCCTGGATGCAGGGG--TAGTGGTGGATAGCGGAGGGGAGAGTACTGCTGGTGA----TTGTC---------------AGGGAAGGAAGCCTGGCTTTCCATACTTA--C----GG-TGGGCGTGGGGAGAGTTTGCTTGTGACCCACGTGGCCCGGCAG------------------GCTGGCTGGGTAGTGGCTCTCCTCTACGCCTGAGGAAGGAGGCCAAGGCCACCAAGAAACAGCAGAAGATGGCGCAGAGGCAGACCCCCAGTGTGCAGTAG---AGAGTCAGCTGGTCGCTACTTA s canFam1.chr5 46600044 321 - 92064832 AGAAAAAGTACTGCAGGGATGTGCCCCAGG------CCTTTGTCAGGAAGGGCTGGCAAACTGCTGTCCT-TTTGGAAGCAGGGC--CAGTGCCAG--GACAGAAGGCCGACCAGCA-----GA----TTGTCCCACAGGCCCCGGGA--GTCTGAGGGCCCGA---TCTGTGCTCA--CCCTTGG-AGGACTTGGCCTGGGTC----------CGGCATGGTGCTGGTG--------AGG-------GCTGGCAAGAGAATTGGTCCCCTCTCCTCTTGAGGAAGCAGGCCACCGCCAGGATGAAGCAGCAGATGATGGCACAGAGGCAGAGCCCCAGAGTGCTGTAGACCAGGGCCAACTGTTCGGTGCTCA a score=4546.0 s hg17.chr17_random 522100 31 + 2618010 GCCCCAGCCCC-AGGGGAGCTGCAAGAT-------AGAC------- s panTro1.chr19_random 41312140 31 + 57627672 GCCTCAGCCCC-AGGGGAGCTGCAACAT-------AGAC------- s mm5.chr11 60889468 31 - 121648857 GCCTCAATCCT-GTGGGTGTTTCAGGAT-------AAGC------- s canFam1.chr5 46600365 46 - 92064832 GCTTCAGCCCTGAGGGGTGCCACAAAGCTCCCGTGAGGCACGAGAT a score=-178.0 s hg17.chr17_random 522131 14 + 2618010 TGAGA--------CCCTCACAg---- s panTro1.chr19_random 41312171 14 + 57627672 TGAGA--------CCCTCACAT---- s canFam1.chr5 46600411 26 - 92064832 TGGGAGGGGCTCTCCACCACCCAGGG a score=25355.0 s hg17.chr17_random 522145 339 + 2618010 gttgggctctgtgtccccacccaaatctcatctggaattgtaatcctcctgtgtcaagggaggaacctggtgggaggggatgggatctggggacaggttcccccctgctgctcccctgatagtgcgggagttctcaggagagctgatggtttgaaagtgtggcacttcctgcttctccgctcactccctcctgccgccttgtggagaaggtgcctgcttccccttcgccttctgccatgactgtaagttccctgaactgggagtcgattaaacctctttcctttataaattacctaggctcaagtatttctttatagcagtgtgaaaacaaactaatac---- s panTro1.chr19_random 41312185 343 + 57627672 gtttggctctgtgtccccacccaaaactcatctgggactgtaatcctcctgtgtcaagggaggaacctggtgggaggggattggatttggggacagtttcccccgtgctgctccccggatagtgaggtagttctcaggagagctgatagtttcaaagtgtggcacttactggttctccactcactccctcctgccgtcttgtgaagaaggtgcctgcttccccttccccttctgccatgattataagtttccagaactgcaagtcaattaagattgtttcctttataaattacccaatctcaggtatttctttacatcagtgtgaaaacaaatgaatacaGTC a score=9509.0 s hg17.chr17_random 522484 92 + 2618010 CCCTTCCCTGA--GGCGCCTTCTCCTTAGGCAACCCGCTGCTCCCATGCTCCTCCTCT-------------GCCCCC------TGTTCTTTCTTTTCCCCTCATGAGGCCCAA s panTro1.chr19_random 41312528 92 + 57627672 CCCTTCCCTGA--GGTGCCTTCCCCTTAGGCAACCAGCTGCCCCCATGCTCCTCTTTT-------------GCCCCC------TGGTATTTCCTTTCCCCTCATGAGGCCTGA s mm5.chr11 60889530 111 - 121648857 CCCCTTCTGGAACGGTGCCTTAT--TTAGGCCTGTAGCTACATGTACCCTCCTCCATTCCAGGACTAAGTGGCCTCCTTACCATAGGCTTTCTTTTCACCTCATTAGGCCCAA s canFam1.chr5 46600437 73 - 92064832 CCCTTCTCTGA--AGTG---TCCCTGCAGGCTAGCAGC---------------CCCTT-------------GTCCTG------CAATCTTTCTTTTC-CCTCATTGAGCCCAA s danRer1.chrUn 44325611 79 - 367113659 CCCTCCACCCA--GGGGCCTCTGACCCCAGCAAGCTAC----CCAGGGGTCCACCTCT--------------CTCCC------TGGACTTGCAGT--------AGAGGCCCCA a score=-626.0 s hg17.chr17_random 522576 46 + 2618010 GTGATAAACGGGgccagccccagtgccagcc------cc------------agccc-cagcccca s panTro1.chr19_random 41312620 28 + 57627672 GTGAT------------------------CCACATGGCC------------AGCCC-CAGCCCCA s mm5.chr11 60889641 33 - 121648857 GTAATCCACACAGCCATC-----------CC------CA------------GGTCC---GCCTCA s canFam1.chr5 46600510 59 - 92064832 GCAAGCCACATGGCCGTCCCATCCACCTGCC------CCCTTGGAGGGCAGAGCCCTCAGCCCCA a score=2416.0 s hg17.chr17_random 522622 99 + 2618010 TCCTACTGCAGGCCTGTG-TGGCTGCTGGAGAGGCCGTGTTCCTTTCCTCTCCCCGAGCCTG----------CCTGATATG-----CTTTCTGGAT-----CCTGGAGGAAACTGACCCC s panTro1.chr19_random 41312648 99 + 57627672 TCCTACTGCAGGCCTGTG-TGGCTGCTGGAGAGGCCAGGCTCCTTTCCGCACCCCGAGGCTG----------CCCGATATG-----CTTTCTGGAT-----CCTGTAGAAAACTGACCCA s mm5.chr11 60889674 63 - 121648857 -------------------------CTGATGACGTGGGATTCCTTTTCTAGCCCCAAGAC------------ACTGCTATG-----CTTTCTG--------------AGGTATTGGCCC- s canFam1.chr5 46600569 102 - 92064832 GCATGCTGTCCACCTGTC-TGGCTCCTGGAGAAGTTG-ATTCCCGGCCTCA-CTCAGGCTTG----------CCTGGTGTGGACCCTTCTCTAGAC-----TCTGGAGACAATCAGCCCC s danRer1.chrUn 44325706 115 - 367113659 TCCACATAGGGGCCTCTGACCCCAGCAAGCTACCCAGGGGTCCACCTCTCTCACTGAACTTGCAGTAGAATCCCCAGGGTG-----CCCCCTGGCCCCCCGCCTAGGGGCCTCTGACCCC a score=16819.0 s hg17.chr17_random 522721 167 + 2618010 CTAT-TCTCATACTGGTG-CAACATCTTCCAAGACCTCAAAGCTGTACCATTT--GAGC-CAGTCTTTTTTCTTATCTCCACTTGC---TAGGGCTGTCATTGGGACAGTCCTAGA---------GGGTGGTGCCAATGGATGAATGGATGGATG-------GACAGTAGTCCAGGGATGATGTCCCTGTC s panTro1.chr19_random 41312747 179 + 57627672 CTAT-TCTCATACTGGTG-CAACTTCTTCCAATACCTCAAAACTGGACAACGT--GAAC-TTATCTTGTTTCTTGTCTCTTCTTGC---TAGGGCTGTCATTGGGACAGTCCGAGATGGGGGGGTGGGGGGAGACAATGGATGAATGGGTGGATGAATG---GACAGTAGTCCAGGGA-GATGTCCCTGTG s mm5.chr11 60889737 157 - 121648857 --------CAGACTGATGACACCTTTCCCCAAGACCTTAAAGCTGGACACCTC--TGGCGCTGGCCCATTCTGTTTCTCCACATGC---TTTGGAGGC-----AGACAAACCCAG----------GGATGG-----ATGGATGCATGCATGCATGTATGCATGCTTGT-GTCCCGGGAGGGTGACTCCACC s canFam1.chr5 46600671 160 - 92064832 CTCTACCCCAGGCTGGTAGCAACTTCTTCTAAGAGCTCAGAGCTGGACACCTCTGGAGC-TGGCTCTGTGTGCCATCTGCTCTTTCCCATAGGACCTAGATCGGGCCAGTACCAG----------AGGTGG-----ATGGATAAGTGAAGA-----------GACAATAGTCCTGGGCAGATGACTC---- a score=8517.0 s hg17.chr17_random 522888 49 + 2618010 TGTCCTGAACCGGGCCCTTCCTCCAATGAGAAGCCTTCCTGAGTGAGTA s panTro1.chr19_random 41312926 49 + 57627672 TGTCCTGAACTGGGCCCTTCCTCCAATGAGAAGCCTTACTGAGTGAGTT s canFam1.chr5 46600831 48 - 92064832 TGCCCTGACCTGGG-CCTTCCTCCAAGAGGTGGCCTTCCTGGGGAAGCA a score=28539.0 s hg17.chr17_random 522937 347 + 2618010 TATAcagtcatcccttggtatccatggaggattagttctagggtccccgggaatgccaaaatccatggatgctcaagtctctgatataacgtggcctagtatttacgtataagctatgcgcatcctcccgtatacgttagaccgttactagattatttatgatgtgtaatacaatgcagatgctacataaatggtcgtgatactgtattctttagggaatgatgacaagaacaaagtctgcacatgttcaatagaaacataaccgtccaatttattttctgaatattttccat-ctgctgttgctgaatctacagatgcagagctcctggatacgagagccaagtgTG s panTro1.chr19_random 41312975 345 + 57627672 TATAcagtcatcccttggtatccatgga---ttagttctagggtccctggggatgccaaaatccatggatcctcaagtctctgacataacatggcctagtattcacatatcagctatgcacatcctcctgtagacattagaccatctctagattattcaggatgtgtaatacaatgcagatgctacataaatggtcgtgatactgtattctttagggaataatgacaagaacaaagtctgcacatgttcaatagaaatataaccgtccaatttattttctgaatattttccattctgctgttgctggatctacagatgcagagctcctggatatgagagccaagtgTG a score=37340.0 s hg17.chr17_random 523284 240 + 2618010 CTTTGAGAGTAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGCAGGTGTTGATCAGGAGGACCC---TGCACTGGGGCATCTGGACGTCCTGCCTC---AGGACTTGAGACTCCAG-TTGGATGGCACAGACAGACTC---------------AGCCCAGGTCAAAGCCGTCCCCTTGAAGTTTCTTTTTATCCCAAGCTCTTTCTGGACCCTGGAATTC-GGCATCCCCTAGGCCCTGCGTGGAAGGACAGATGAACCAG s panTro1.chr19_random 41313320 255 + 57627672 CTTTGAGAGTAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGCAGGTGTTGATCAGGAGGACCC---TGCATTGGGGCACCTGGACGTCCTGCCTC---AGGACTTGAGACTCCAG-TTGGATGGCACAGGCAGACTCGGCACAGGCAGACTCAGCCCAGGTCAAAGCCGTCCCCTTGAAGTTTCATTTTATCCCAAGCTCTTTCTGGACCCTGGAATTT-GGCATCCCCTAGGCCCTGCATGGAAGGACAGATGAACCAG s canFam1.chr5 46600881 220 - 92064832 CTTCGAGAGTGGGACAGGTCCAGTTGCTAATGAATCTGGGATAGCA------AACCAGGAGGGCCCAGGAGAACTGGGGTG-CTGGTCACCCCACTTCTCAGGGTCTTGAGCCTCTGGTTTGGATGCCAGAGGAAGACTC---------------AGCTC----CAAAGCCCTCCCCTTGAAATTT-----------------TTCCTGGCCCCTGGAATCAGGGCACCCCCTAGGCCCCAGGTGGAAGGACAGATGGGCCAG a score=33160.0 s hg17.chr17_random 523524 373 + 2618010 GTTTTAGATAACGTGTCTAGAAGAGTGAGCCCCTACTGTGTGCCCGGCACTTTCCCCACAGGATCCTCTAGCTAGAATATCCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCAGAAATGAAAAAGTGATACCATTAGAGACACTAAAAAGACCATTAGGTAATAGTATTAGCTTTTGTATTCTGAGATCCAATAGCAGCAG---TCACTTCCCTCCACCGCTATGTGTATCCCAGGACCACCCTGGGCGGGGAGGGCTGGGGTTAGGGAGCAGCCATGGATGCTCTGATGCTGGCCC-TGGGCCTCGGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGGGGCAGCCGGGCCTGGCCAGAGAAGC s panTro1.chr19_random 41313575 377 + 57627672 GTTTTAGATAACATGTCTAGAAGAGTGAGCCCCTACTGTGTGCCCGGCACTTTCCTCACAGGATCCTCTAGCTAGAATATCCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCAGAAATGAAAAAGCGATACCATTAGAGACACTAAAAAGACCATTAGGTAATAGTATTAGCTTTTATATTCTGAGATCCAGCAGCAGCAGCAGTCACTTCCCTCCACCCCTATATGTATCCCAGGACCACCCTGGGCAGGGAGGGCTGAGGTTAGGGAGCAGCCATGGATGCTCTGATGCTGGCCCCTGGGCCTCGGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGGGGCAGCCGGGACTGGCCAGAGAAGC a score=922.0 s hg17.chr17_random 523897 5 + 2618010 AGCAC s panTro1.chr19_random 41313952 5 + 57627672 AACAC s rn3.chr8 61730210 5 - 129061546 AGCAT a score=18972.0 s hg17.chr17_random 523902 57 + 2618010 ACACGTGCACAGACGTGTTTACCCACATACACATGTGCACGCACGTGCACAAACACA s panTro1.chr19_random 41313957 57 + 57627672 ACACGTGCACAGACGTGTTTACCCACATACACGTGTGCACGCACATGCACAAACACA s mm5.chr7 14829528 57 - 133051633 ATACATGTATGAACGTATGCACACACATACACATGTGCGCGCGTGTGCACACACACA s rn3.chr8 61730215 57 - 129061546 GTACACATACATACATGCTTACCCACATACATGTGAACAAGCACGTGTGTATGCACA a score=819.0 s hg17.chr17_random 523959 7 + 2618010 TTGCAGG s panTro1.chr19_random 41314014 7 + 57627672 TTGCAGC s rn3.chr8 61730272 7 - 129061546 CCACAGG a score=161408.0 s hg17.chr17_random 523966 1747 + 2618010 CAGGCATGTTGACGCCTCAGGCAGCGGAGGACCCTGACTCTGGGCGCTGCTGACCCGGGCAAGGCCCCACTGTGATTCGTGCCATGACCTCAGAATGTCACTGGTGCTTAGCACCTGTCTGCTCTCTGGCCTGCCTCAGTGGTCTACAGCAGTTACACACAGGCAGTGGTATCTGTGAGCAGCTCTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATGACCCAGGCCAGCTGATTCATCAGAATCAGGT-GAGCGTGACCTGCTCTCTTCCCTCCAGGCGGACTTGGGGGCAGTGGCTACGGTGCGGGCGGTGTTGGCCTCTGTGGGGCAGCTACCGAGGAGGGTCATCCCtgagcactcaccaggcgcccgttctacactgcccgtgtagacgattggctctttcgtctccatggtggcttcgtagagtgggtgctgttcccaaatgtccccattcgacagatgagacgtctggggtcagagaggcagtaaccggcctgggaatccggacatgaccctgagttttgctctcagccctgccgtgtgctgtgctggaattcaggcctgaaccctgtgacctccctgccctagatcccaaatctgCCCAGGTTTCCCATCCCGATGGGGCAGAGCCTGGTCCTGGCAGAGCCACTGGTATAGAGCCACTGGTACAGATCCACTG--------------ACGGTCCTCAGAACACCTCTGTGCCCTAAGCTGGGTCCTGATGGTCGCTGTGGGCCCCACTGAACACACATGGTCCCTTGTCCGGGGGAGCCTGCTGCCCTTGGGCAGCTGTGGAAAATGAAGGAGCCCTGGAGGGCTGGCTGAGGGGAGACTATCTTCCCTTGTGTTCAAAGGGGTCCGGGCACTAGGGTTCTCCCCAGGTATTTCTTGCTCTGCGTGGTCCTCTTGAGGCCTCGCCCTCCTTTTGCCTCGAGTATTCCCAGGAGGGACGGTCCATCCAGCTGTTCTCCAGGACCAAGGACCCACTGTTCTTCCTCAGTGACCCAGGAAAATGAAGCCTCCTCCTGTTGGGACGGCTCAGAATGGTGGACTCCACAGTCCCTCCGCGAGAGACGTGGTTTCCATGCGTACAATAGATCTTCCTCATCCCCCAAACCCAACACCCTCCTGCTCAACAGGCGTTATTCCTAAAGTGGCTTCACTGTTCAGACTGAAGAGCCACGGTAGCCAAAGTGATGAGCGGAGTAGAACCGAGCAGTCGGGAGAGATCTTGTTCCCTGTAGGAAACTGGGCATCGCTGAGGCCCTGAGCATCCCAGGAGGCCGATTGCACAGAGACCTCTGGTCGCTGACCCCAGTCTGCCTCCACATCCCTGGAATAGCCCATCATGGGCCCTTCACCCTTGGCAGGTGGAAACCATTCAACCTGCTGGGGCCGGTGTGTCCCCATTTCATGGCATTGGGGGACAACAGGATTCTCTGTCTAGGTCCCACTGTACTCAAGTCCTTGGGAAGATGCCCACCCCTGCTTGGGACTTGAGACTCCAGAGACTGGAGCAGCTGTGGGCCACTGGGTCTGGCCCCTTTTTCCCTGGGGGCGGCGGTGGAATGGGGGTTACGCAGCCAGCCAGCATCTGGGAGCCCGGCGAGAGCGGTTCAGGTGTT-CTCCGAAGCCGCCGCGTACAGTGTGACCTTTAGACAATTCTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGCAGTTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATAGAAAA s panTro1.chr19_random 41314021 1763 + 57627672 CAGGCATGTTGACGCCTCAGGCAGCGGAGGACCCTGACTCTGGGCGCTGCTTACCCGGGCAAGGCCCCACTGTGATGCGTGCCATGACCTCAGAATGTCACTGGTGCTTAACACCTATCCGCGCTCTGGCCTGCCTCAGTGTTCTACAGCAGTTACACACAGGCAGTGGTATCTGTGAGCAGCTCTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATGACCCAGGCCAGCTGATTCATCAGAATCAGGTCGAGCGTGACCTGCTCTCTTCCCTCCAGGCGGACTTGGGGACAGTGGCTACGGTGCGGGCGGTGTTGGCCTCTGTGGGGCAGCTACCGAGGAGGGTCATCCCTGAGCACTCACCAGGCGCCCGTTCTACACTGCCCGTGTAGACGATTGGCTCTTTCGTCTCCATGGTGGCTTCGTAGAGTGGGTGCTGTTCCCAAATGTCCCCATTCGACAGATGAGACGTCTGGGGTCAGAGAGGCAGTAACCGGCCTGGGAATCCGGACATGACCCTGAGTTTTGCTCTCAGCCCTGCCGTGTGCTGTGCTGGAATTCAGGCCTGAACCCTGTGACCTCCCTGCCCTAGATCCCAAATCTGCCCAGGTTTCCGATCCCGATGGGGCAGAGCCTGGTCCTGGCAGAGCCACTGGTATAGATCCACTGGTATAGATCCACTGGTATAGATCCACTGACGGTCCTCAGAACACCTCTGTGCCCTAAGCTGGGTCCCGATGGTCGCTGTGGGCCCCACTGAACACACATGGTCCCTTGTCCGGGGGAGCCTGCTGCCCTTGGGCAGCTGTGGAAAATGAAGGAGCCCTGGAGGGCTGGCTGAGGGGAGACTATCTTCCCTTCTGTTCAAAGGGGTCCGGGCACTAGGGTTCTCCCCAGGCATTTCTTGCTCTGTGTGGTCCTCTTGAGGCCTCGCCCTCCTTTTGCCTCGAGTATTCCCAGGAGGGACGGTCCATCCAGGTGTTCTCCAGGACCAAGGACCCACTGTTCGTCCTCAGTGACCCAGGGAAATGAAGCCTCCTCCTGCTGGGACGGCTCAGAATGGTGGACTCCACAGTCCCTCCGCGAGAGACGTGGTTTCCATGCGTACAATAGATCTTTCTCATCCCCCAAACCCAACACCCTCCTGCTCAACAGGCGTTATTCCTAAAGTGGCTTCACTGTTCAGACTGAAGAGCCACGGTAGCCAAAGTGATGAGCGGAGTAGAACCGAGCAGTCAGGAGAGATCTTGTTCCCTGTAGGAAACTGGGCATCTCTGAGGCCCTGAGCATCCCAGGAGGCCGATTGCACAGAGACCTCTGGTCGCTGACCCCAGTCTGCCTCCACATCCCTGGAATAGCCCATCATGGGCCCTTCACCCTTGGCAGGTGGAAACCATTCAACCTGCTGGGGCCGGTGTGTCCCCATTTCATGGCATTGGGGGACAACAGGATTCTCTGTCTAGGTCCCACTGTACTCAAGTCCTTGGGAAGATGCCCACCCCTGCTTGGGACTTGAGACTCCAGAGACTCGAGCGGCTGTGGGCCACTGGGTCTGGCCCCTTTTTACCTGGGGGCGGCGGTGGAATGGGGGTTACGCAGCCAGCCAGCATCTGGGAGCCCGACGAGAGCGGTTCAGGTGTTACTCCGAAGCCGCCGCGTACAGTGTAACCTTTAGACAATTTTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGTAGCTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACAAAA a score=41930.0 s hg17.chr17_random 525814 516 + 2618010 gagctcctactgtttgccaggcatattctgagatgatcacgttgaaatctcagagttaccctgcagagtagtcagggtatcactgcctgacagatgaagaagctgaggcttccagcagataaatgacttaccccaggccacatagaaaatgagtgggagagcccaggtctgtctgTGAGGTATAATGAAATTAGCATAAACCCTCCACATTGGCGCCACTcgcataaattaacatatattctctcacagaaagtattttattgggcataacagtttgtatcatttaccgtttaacattagccgtggatcttcccacatcacatgactatgcctcattctttttggataatatgattactattgaatggatttactatcattcacttaatcaatactccttttgatggccattttaattgtctattttttccttttgcacagattggtgtaataaacgtgattttatagtaatatttttgtCTGCCTGTGAAAATGTTTGCTGGACAATAAattcct s panTro1.chr19 35036966 510 + 82489036 gagctcctactgtttgccaggcatattctgagatgatcacgtttaaatctcagagttaccctgcagagtagtcagggtatcactgcctgacagatgaagaagccgaggcttacagcagttaaatgacttaccccaggccacatagataatgagtgggagagcccaggtctgtctgTGAGGTATAATGAAATTACCATCAACCCTCCACATTGGCTCCACTTGCATAAATTAAC--ATATTCTCTCACAGAAAGTATTTTATTGGGCATAACATTTTATATGttttaccatttaacattagttatggatcttcccacgtcacataaatatgcctcattctttttcgataatatgattactaatgaatggatttactatcattcatttaatcaatactccttttgatggctattttaattgtctgtttattcattttgcacagattgatgtaataaacatgaatttatagtaatatttt----tgcctgtgaaaatgtttgctggacaataaattcct a score=45650.0 s hg17.chr17_random 527326 510 + 2618010 gaacttggcatttttatctacctcattctaccgatgaggaggccgagtctcagagagttcacagacctgcctaaggtcactcagctagaggtgatacaaccagggtttgaactgagatctgccaagcttctgagtttattctttttcccccac-acca-aggatcctcaattctgccttactgacatcaggatccggtcaattctttgtgatgggggctgtcctgcacctgg-caggatgtttagcagcttctctggcctccacccactggatgccagAGGAATGCAGAAGAGGCTTGTTcattctcccatttaatcctcaggacaatatctgacataaatgttacgtcttttattttataaatgaagaaaatgagactcagaaaggtttaagtgagttacttaagaacacacagacagcaagaggtagaactggaaaccgaacacaggtGTCCACATGGGACAACAAAAAAGTTCACGTTCCATCTTCTTTTGAGTCTCTCATTTCAATAAT s panTro1.chr19 35041167 513 + 82489036 gagcttggcatttttatctacctcattctaccgatgaggaggccgagtctcagagagttcacagacctgcctaaggtcactcagctagaggtgatacaaccagggtttgaactgagatctgccaagcttctgagtttattctttttcccccaccacCAGAggatcctcaattctgccttactgacatcaggatccagtcaattctttgtgatgggggctgtcctgcacctgggcaggatgtttagcagcttctctggcctccaccgcctggatgccagGGGAATGCAGAAGAGGCTTGTTcattctcccatttaatcctcaggacaatatctgacataaatgttatgtcttttattttataaatgaataaaatgagactcagaaaggtttaagtgagttacttaagaacacacagacagcaagtggtagaactggaaaccgaacacaggtGTCCACATGGGACAACAAAAAAGTTCACGTTCCATCTTCTTTTGAGTCTCTCATTTCAGTAAT a score=121370.0 s hg17.chr17_random 527836 753 + 2618010 TACCATTGTGTGGATATGAGCTGAAGTACAGGAAACCTGGGG-CTGAACTCTCCTCCCATCAGGCCTAGGAGCCCCAGACCAGAACCCCAGCCCAAGGTCTCCCAGTCAGGCCCGCTGGCGT-GAGCTGGCATCTACACTAGCATGGTCTCCCAAAGCTGCAGGGATGCCAGTCTCGCCGCTGATGAAGAAAATGAAGGGCATTTGCTTCTCATGCAGGCTGTCGGGATTTAACACAGATTCCTTTTCTTGCTCTCTTCTCCCATAGCACAAAACTGGGTGGTCCATCCCCCTCCCAGTGTCCC---AAGGCTTT-GTTGCGTGTTCTCTTTAATTTCTCCCACTC-TTGTGGTGTACCCTACCCTCATCTCCCTGGCAACCTTTCTGCTGTATCCTCTCGACACCTGGATCACAAGAACA-CTTGTGAGACCCCTTAACAAGTTACATCCCAAATTATCATTCCCC--TTTGTCCTCAGCCAGTGCTCAGGTCCAA---CTTGCTCTcctggggtgactttctttcctgcccaatatggtttcatcatctgtaaatt-ggggataattaaagtCTTGATCCTG--ATATTTGACTCTCAAAGCAGAAGTAGCAAGCTCAGCCAAGTCACTTCAACAAGAGGAGAAGTTCCTTGTGAACCAAAAGGGCACTGGTCACAAGGGCCGCTCCTTCTTCTGTCAGGCCTCTCCAGCACGCCCTTGGCT---CAGCCAAAGAAGAGACTCAGGCTGTGCTTCTGC-ACTGTTGGGATA s panTro1.chr19 35041680 753 + 82489036 TACCATTGTGTGGATATGAGCTGAAGTACAGGAAACCTGGGG-CTGAACTCTC-TCCCATCAGGCCTAGGAGCCCCAGACCAGAACCCCAGCCCAAGGTCTCCCAGTCAGGCCCGCTGGCGT-GAGCTGGCATCTACACTAGCATGGTTTCCCAAAGCTGCAGGGATGCCAGTCTCGCCACCGATGAAGAAAATGAAGGGCATTTGCTTCTCCTGCAGGCTCGCGGGATTTAACACAGATTCCTTTTCTTGCTCTCTTCTCCCATAGCACAAAACAGGGTGGTCCATCCCCCTCCCAGTGTCCC---AAGGCTTT-GTTGCGTGTTCTCTTTAATTTCTCCCACTC-TTGCGGTGTACCCTACCCTCATCTCCCTGGCAACCTTTCTGCTGTATCCTCTCGACACCTGGATCACAGGAACA-CTTGTGAGACCCCTTAACAAGCTACATCCCAAATTATCATTCCCC--TTTGTCCTCAGCCAGTGCCCAGGTCCAA---CTTGCTCTCCTGGGGTGACTTTCTTTCCTGCCCAATATGGTTTCATCATCTGTAAATTGGGGGATAATTAAAGTCTTGATCCTG--ATATTTGACTCTCAAAGCAGAAGTAGCAAGCTCAGCCAAGTCACTTCAACAAGAGGAGACGTTCCTTGTGAACCAAAAGGGCACTGGTCACAAGGGCCGCTCCTTCTTCTCTCAGGCCTCTCCAGCACGCCCTTGGCT---CAGCCAAAGAAGAGACTCAGGCTGTGCTTCTGC-GCTGTTGGGATA s canFam1.chr9 23412884 726 - 53642819 TACCATCCTGTAGACAGGAACC-CGGAGCAGGCAGTCTAGGGCCTGAACTCCCCTCCTGTCAGGCCT----------------GATCCTGGCCTGAGGCCTTACAGCCAGGCTCACTGAAGCAAAGCTTGCCCCCACATTAGCCTGGTTTCCCAAAGC--CACGGATACCGGTGTCTCAGCTGGTGGACAGAGTCAAGGATGTTGCCTCCCCCTACAGGTGGCCGGGGTTTGGCGCAGCTTCCCTTTCTCATGTTTTTCTACTGGAGCACAAAGCAGAGTTGGC---CCCACTCCGAATCCCCTTGGAAGGCTTTGGTTGCATATTCTCTTTAGTTTGTCTTGCTCTTTGATGGGCACCCTATTCCCATCTCCCTGGCCACCTTTCTGCACAATTCTCT----ACATAGTGCATCAGAACATTTTGAGAAGTCCTTTGGCAAGCTGCACCCCA------CGGCCCCCAGTTTACCCTCAACCAGTGCCCCAGACCAAACCTTTGGTCCCTCTGAATGATTTTCTTTCTTGTTCAATATGATTTCTTAATCTGTGAGCT-ATTAATAATTAAGGTCTTGATCCTGATATATATGACTCT-AAAGCACAAGTTGCAAACTCGGCCAAGCCACTTAGATGGGAGGAGATACTGCTT-TGAACCTAAAGGATGCTGGTTACAATGGCCAC-----------TCAGGCCCCTCAAGCATGCCATTGGCCTCGCTGCCAGAGAAGGGACT-AGGCTGTGCTTCTGCTGTGGCCAGGATG a score=3809.0 s hg17.chr17_random 528589 7 + 2618010 ACATAGG s panTro1.chr19 35042433 7 + 82489036 ACATAGG s mm5.chr11 78561373 7 + 121648857 ACTCAGG s rn3.chr10 65074780 7 + 110733352 ACTCAGG s canFam1.chr9 23413610 7 - 53642819 ACGGAGG a score=20721.0 s hg17.chr17_random 528596 100 + 2618010 CCTCTTCCATGTGGttccacaccaggaacatggggaca-atcagacctct---cccag---tgtgggcataaggatacaagatcatgTCAATAT----TGACATTCATAAT s panTro1.chr19 35042440 100 + 82489036 CCTCTTCCATGTGGTTCCACACCAGGAACATGGGGACA-ATCAGACCTCT---CCCAG---TGTGGGCATAAGGATACAAGATCATGTCAATAT----TGACATTCATAAT s mm5.chr11 78561380 90 + 121648857 CCTCCTCTATGAGCTTTTCTATCAGG---ATAGGGAAACCCCAGACATCC---CTTGC---TATGTGGGAAGGGATA------------AATATAAGATGACAGCTTTACT s rn3.chr10 65074787 90 + 110733352 CCTCCTCCATGAGCTTTTCTATGAGG---ATAGGGAAGCCCCAGACCTCC---CTCAC---TCAGTGAGAAGGGATA------------ACCATATGATGACAACTTTACT s canFam1.chr9 18859851 97 - 53642819 CCACCTCCACATGACtccacacctggagaatgggagta-atcaaatctcagagctcaggcatgcgggtaaaatgagatac---------tgtat----TAATATCCATACT a score=27978.0 s hg17.chr17_random 528696 308 + 2618010 ggctgggcgcagtggcacacgcctgtaatgccagcactttgggaggctgaggtgggcagattgcttgaaccccagagttcgaaaccagcctgggcgacttggcaaaaccagtctctactg-aaaatacaaacaattggctgggcttggtggcgcacacctgtagtctcagctacttgggaggctgaggtgggaggattgctcaaacccagggaggttgaggcttcagtgagctatgatggcactgctgtactccaacctgggcaacagagtgaggccctgtctcaaaacaaaaacaaagacaaaacaaC s panTro1.chr19 35042540 309 + 82489036 GCctgggcgcagtggcacaggcctgtaatcccagcactttgggaggctgaggtgggcagattgcttgaaccccagagttcgaaaccagcctgggcgacttggcaaaaccagtctctactgaaaaatacaaaaaattggctgggcttggtggcgcacacctgtagtctcagctacttgggaggctgaggtgggaggattgctcaaacccagggaggttgaggcttcagtgagctatgatggcactgctgtactccaacctgggcaacagagtgaggccctgtgtcaaaacaaaaacaaagacaaaaCAAC a score=2120.0 s hg17.chr17_random 529004 9 + 2618010 ATTCATAAT s panTro1.chr19 35042849 9 + 82489036 ATTCATAAT s mm5.chr11 78561470 9 + 121648857 ATCCAGGAA s rn3.chr10 65074877 9 + 110733352 ATCCATTAC a score=219291.0 s hg17.chr17_random 529013 611 + 2618010 AGTAGCAATAGCTACTATGTGCCAAGCCCAGGCACCTCTTCGAGTCTTTGCTGTCACCCTATCAGGTAAGCGTGCTTAGAAG--TTACACGaagcacacggctcagtgtttggccca-tggtaagggcctaaaaagggatagccccaGTGGTGGGGATGCTGCTGC---------TGCTGACCATTAACCCCAGTCTGCTCCACCTTCTTCCAGGCAGTCTGTGAGATGTTTGATGTCCGAGGCAAACAGCACATTCAGATCCCCAAGCTCTACACCTCCAGTGTGACCAGGCACCTGCACCACTTCAGGCTCATGCAGGACTCACAGCCTTTGGACCTCAGCTAAAGGACTTGCTTCTCTTCAGCACACGGGG------------CTTGTTTGTGTTGGGG---TCTGAGCCCTGAGCCCATGGTCAAGGAGACCCCCAGGTCTTTCTGAACAGAGACAGCTGGCCTGG-------GGGCCTCCCTCTCACT-GCGTGCAAGAGGCTGTTAGGGTGCAAGACTCAAGG-----------CGCTGAGGGAGGCTGTTTCAGGAGGGAGCCCCAGGAGGGTGGTGG--AGACAGAAGGGGGCAGcatctgccgaggccctactg-------tgtgcctggcaccgtgtggggtttctggcccatatg s panTro1.chr19 35042858 611 + 82489036 AGTAGCAATAGCTACTATGTGCCAAGCCCAGGCACCTCTTCGAGTCTTTGCTGGCACCCTATCAGGTAAGCGTGCTTAGAAG--TTACAGGAAGCACACGGCTCAGTGTTTGGCCCA-TGGTAAGGGCCTAAAAAGGGATAGCCCCAGTGGTGGGGATGCTGCTGC---------TGCTGACCATTAACCCCAGTCTGCTCCACCTTCTTCCAGGCAGTCTGTGAGATGTTTGATGTCCAAGGCAAACAGCACATTCAGATCCCCAAGCTCTACACCTCCAGTGTGACCGGGCACCTGCACCACTTCAGGCTCATGCAGGACTCACAGCCTTTGGACCTCAGCTAAAGGACTTGCTTCTCTTCAGCACACGGGG------------CTTGTTTGTGTTGGGG---TCTGAGCCCTGAGCCCATGGTCAAGGAGACCCCCAGGTCTTTCTGAACAGAGACAGCTGGCCTGG-------GGGCCTCCCTCTCACT-GCGTGCAAGAGGCTGTTAGGGTGCAAGACTCAAGG-----------CGCTGAGGGAGGCTGTTTCAGGAGGGAGCCCCAGGAGGGTGGTGG--AGACAGAAGGGGGCAGCATCTGCCGAGGGCCTACTG-------TGTGCCTGGCACCGTGCGGGATTTCCGGCCCATATG s mm5.chr11 78561479 582 + 121648857 AATATCACTAACCACTGTGTGCCAAGCCTAGGATTCTCTGAGCGCCTCCAGC----CCCTTTCAGATG---GCACGTTGTGA--TTCTGTGATGC-CGCCATTCGGTATTTGACCCA-TGGTGAGGG--------------------GTGGTGA---------------------CGGTGACGATGAATGCCATTCTGCCTAAC---TTTCCAGGCAGCCTGTGAGACCTTTGATGTCCGAAGCAAACATCACATTCAGATCCCGAAACGCTTCACTTCCAATGCAACATGGGAGCCACAGCAATATAGGCTCATCCAGAGCCCGGAGCCTTTAGACCTCAACAGAGGTAAGAGCCCCTCTGCACCCTACTGGG-------CCTTCCCTGCTTGAGCTGAGGCTATCTGAGCCCTGAACCAGTAGTCAAAGAATCCACCATGCCCTTCT-AATGAAGGCAG-TCACCTGGAACTGCCAGGCAGCTGTCTCCCT-GGCCAC-AGGGTCTGTT--GGTACAGAGCTTCAGG-----------CTCTGAGGGAGAGCGGGTCA----GGAGCCCTGAGAGAGTGGTAG-TGGGCACAGGGAGCTGGCATCAGCAGGTGGGTGGTGGCGATAGCTGTGCCAGGCACTGTGCCGGCCTCTTGGCCCACATG s rn3.chr10 65074886 565 + 110733352 AGTATCCATAACCACTGTGTGCCAAGCATGAGATTCTCTGAGCTTCTCCAG-----CCCCTTCAGAGG-ACACACTGAGGTG--TTCTATGACAC-ATCCGTTCAGTATTTGACCCA-TGGTGAGGG--------------------GTAGTGAC---------------------GGTGATGATGAATGCCATTCTTCCTAAC---TTTCCAGGCAGCCTGTGAGACGTTCGATGTTCGAAGCAAACATTGCATTCAGATCCCGAAACGCTACACTTCCAACGCAACATGGGAGCCAGAGCAGTACAAGCTCACCCAGAGCCCAGAGCCTCTAGACCTCAACAAAGGTACCAGCCCCTCC-CACCCTACAGCT--------CTTTCCTGCGGGAGTTGGGGCTATTTGAGCTCTGAACCAATAGTCAAAGAATCCACCATGCCCTTCTGAATAAAGGCAG-TCCCCTGCAACTCCCAGGCATCTGTCTCCCT-GGCTAC-AGAGCCT------------------AGG-----------CTCTGTGGGAGAGCCGGTCA----GGAGCCCTGGGAGAGTAGTAT-TGAGCACGGGAAACCAGCATCAGTGGGTGGGTGGTGGAGACAACTCTGATAGGCACTGTGCCAGCCTCTTGA-CCACATG s canFam1.chr9 18859948 644 - 53642819 AATAGCAGTAACAACTGTGTGCTAAGTCCAGCCACTTCTTTGAGTCCTTGCAGCAGCTCTATCAGATCCATGTGCTCAGTAATTTTACAGGAAGC------------ACTTTACTGATTTGTAAGGACCTACAAAATGGTGGCCG--ATGATGACATCGACCTTGTTAACCACAATGACAGTGGTTAACACCGGCCTGCTCCATCCTCTTCCAGGCAGCCTGTGAGACGTTTGATGTGCGAGGCAAACACTGCATTCAGATCCCCAGGCTCTACACTTCCAATGTGACCTGGGACCCACACCAATACAGGCTCGTGCAGGACTCGCAGCCTCTGGACCTCAACAAAGGTACCTGCTTTGCCGCACCACACGAGACTGGTTGCCCTTCCTGCTGGGGTGGAGG-TCTCTGACCCTGGGGTCTATGGTCCAGGAGACCACTAGGACCCTCTGAACAGAGACAGCTGGCTTAGGGCTGCTAGGCCTCTCTCTATCTCGTATCCAAGAGCCTGCTGGCATGCAAGACTGGAGAGCTTGCTTCATCTCTGAGGGAGGCTGTTTCAGGAGGAAGCCCTGGGAGGGTGGTGGAGAGACAaagggaaccagcaccaactgagagcctccta-------tgtgccaggcactgtgctgggctcctcgcctgccca a score=-338.0 s hg17.chr17_random 529624 4 + 2618010 ggct-- s panTro1.chr19 35043469 4 + 82489036 GGCT-- s mm5.chr11 78562061 4 + 121648857 AACT-- s canFam1.chr9 18860592 4 - 53642819 --ctct a score=-329.0 s hg17.chr17_random 529624 4 + 2618010 ggct-- s canFam1.chr9 18860592 4 - 53642819 --ctct a score=5268.0 s hg17.chr17_random 529628 38 + 2618010 aagtgaccctgcacactcctcttag----------gagagaggctcag s panTro1.chr19 35043473 38 + 82489036 AAGTGACCCTGCACACTCCTCTTAG----------GAGAAAGGCTCAG s rn3.chr10 65075451 47 + 110733352 AACTGGCCTGTGACACTTGTCCTGGCACTTGACCTGTGACAAATCCA- s canFam1.chr9 18860596 38 - 53642819 cagtgagccctgacactcatcttgc----------aagaagggcaCAA a score=55732.0 s hg17.chr17_random 529666 313 + 2618010 atggagaaattgcagttcaggaaggtgaagcaagc-tgcTAGCCTGTGGCCATGTTGGGATCTGGGCCTCAGCCTTCCAGCCACGAAGGCAGCCAAG----------TGTCATGAAGAAGGCATCACAGAGGCAATTCCAGGCTGTAG-TGGTGAACTTTCCACTCTGCAT-CCCCGGGTGCTGTG----------CCCTGTGCCCTGTCTAAGGTAG---CCCTGTGGGTTT-CTATATGTTTAAATTGTCCCCAGCATCAATGATGCTCTCCTGTGGATCCCAAGCCATGGAGATGTCCTGGGACTTTTCATTTTTAGGTACCTAAATTGAATTTCCC s panTro1.chr19 35043511 313 + 82489036 ATGGAGAAATTGCAGTTCAGGAAGGTGAAGCAAGC-TGCTAGCCTGTGGCCATGTTGGGATCTGGGCCTCAGCCTTCCAGCCACGAAGGCAGCCAAG----------TGTCATGAAGAAGGCATCACAGAGGCAATTCCAGGCTGTAG-TGGTGAACTTTCCACTCTACAT-CCCCGGGTGCTGTG----------CCCTGTGCCCTGTCTAAGGTAG---CCCTGCGGGTTT-CTATATGTTTAAATTGTCCCCAGCATCAATGATGCTCTCCTGTGGATCCCAAGCCATGGAGATGTCCTGGGACTTTTCATTTTTAGGTACCTAAATTGAATTTCCC s rn3.chr10 65075498 286 + 110733352 ---GAGAACTTAACGTTCACAGAAACAAAGCAAGTGTGACAGCATG-------GGTGGGGGGTTGGATTAAGTCTTCCA------AAGGGAGCAACA----------AGCCATGAAGGAGGCTT--CTGAGGTGATTCAGGGCGACAG-TGAGTGGC--TCAGCTCTGCCCACCCTGGGAGACATA----------CTCAGTTTCCTG---AGGCCAGACATCATAAATGTGT-CTATGT-TTTAGGATATGCCCAGCTTTATCCCTGTTCTCCTGT-------AAACCACACAGCTGTCCTGAGTCTTCTGTATTTTA-ATATCTAAGTTGAATCTCCC s canFam1.chr9 18860760 324 - 53642819 ataaagaaactgaagctcacagaagtgaagcaagt-tcctagcatatggccgagctgggatttgagccccagctgtccagctcTGACAGCAGCCAAGAATTGTAAACTATCGCAAAGAATATCATGCAGAGGCAACCCTAGGCTGCCGTTGGTAAACTCTCC----------TTCTGGACACTGTGATTCCTCTTTTCTTGTACCATGAGTACAGCAG---TATTGTGGTTTTCCTGCATGGTTAGCCTAGGCCCGACTTCAGCTAAGCTCTCCTGCGGATGCCAGGCCATGGGAATGGCTCAGAAATGCCCATATTTGGGCACCTAG--TGTATTTCCT a score=0.0 s hg17.chr17_random 529979 20 + 2618010 AACACACAGAAGCAAGACAG a score=931.0 s hg17.chr17_random 529979 5 + 2618010 AACAC s panTro1.chr19 35043824 5 + 82489036 AACAC s rn3.chr10 65075784 5 + 110733352 GGCAC a score=1428.0 s hg17.chr17_random 529984 15 + 2618010 ACAGAAGCAAGACAG s panTro1.chr19 35043829 15 + 82489036 ACAGAAGCAAGACAG a score=0.0 s hg17.chr17_random 529984 15 + 2618010 ACAGAAGCAAGACAG a score=3534.0 s hg17.chr17_random 529999 12 + 2618010 CCGC-CCTAACAG s panTro1.chr19 35043844 12 + 82489036 CCGC-CCTAACAG s mm5.chr11 43086926 12 - 121648857 CTGT-ACCAACAG s canFam1.chr9 18861084 13 - 53642819 CCGCACCTAGCAG a score=612.0 s hg17.chr17_random 529999 12 + 2618010 CCGC-CCTAACAG s canFam1.chr9 18861084 13 - 53642819 CCGCACCTAGCAG a score=0.0 s hg17.chr17_random 530011 96 + 2618010 ACTCTTGCATGCAGTGAGAGGGAGGCCGCCAGGCCAGCTGTCTCTGTTCAGAAAGACCTGGGGGTCTCCTTGACCATGCGCTCAGGGCTCAGACCC a score=2575.0 s hg17.chr17_random 530011 25 + 2618010 ACTCTTGCATGC-AGTGAGAGGGA-GG s panTro1.chr19 35043856 25 + 82489036 ACTCTTGCCTGC-AGTGAGAGGGA-GG s mm5.chr11 43086938 21 - 121648857 AC-----CCTGT-GGCCAGGGAGACAG s canFam1.chr9 34782380 26 + 53642819 GCTCTTGGATACGAGATAGAGAGA-GG a score=934.0 s hg17.chr17_random 530011 25 + 2618010 ACTCTTGCATGC-AGTGAGAGGGAGG s canFam1.chr9 34782380 26 + 53642819 GCTCTTGGATACGAGATAGAGAGAGG a score=9751.0 s hg17.chr17_random 530036 45 + 2618010 -------CCGCCAGG-----CCAGCTGTCTCTGTTC---AGAAAGACCTGGGGGTCTCCT s panTro1.chr19 35043881 45 + 82489036 -------CCGCCAGG-----CCAGCTGTCTCTGTTC---AGAAAGACCTGGGGGTCTCCT s mm5.chr11 43086959 53 - 121648857 -------CTGCCTGGCAGTTCCAGGTGACTGCCTTCATTAGAAGGGCATGGTGGATTCTT s rn3.chr10 65075789 37 + 110733352 -------TTCCCAGC-----CACGAAGGCGCTGTTC---A--------TCGAGGGCCCTT s canFam1.chr9 34782406 52 + 53642819 CCTAGCAGCCCTAAG-----CCAGCTGTCTCTGTTC---AGAGGGTCCTAGTGGTCTCCT a score=4537.0 s hg17.chr17_random 530081 7 + 2618010 TGACCAT s panTro1.chr19 35018514 7 - 82489036 TGACCAT s mm5.chr11 43087012 7 - 121648857 TGACTAC s rn3.chr10 65075827 7 + 110733352 TGACTAT s canFam1.chr9 34782458 7 + 53642819 GGACCAT a score=4055.0 s hg17.chr17_random 530088 19 + 2618010 GCGCTCAGGGCTCAGA---CCC----- s panTro1.chr19 35018521 19 - 82489036 GCACTCAGGGCTCAGA---CCC----- s mm5.chr11 43087019 22 - 121648857 TGGTTCAGGGCTCAGATAGCCT----- s rn3.chr10 45658108 22 - 110733352 TGGTTCAGAGCTCAAATAGCCC----- s canFam1.chr9 34782465 27 + 53642819 AGACCCCAGGGTCAGAGACCTCCACCC a score=2835.0 s hg17.chr17_random 530107 7 + 2618010 CAACACA s panTro1.chr19 35018540 7 - 82489036 CAACACA s mm5.chr11 43087041 7 - 121648857 CAGCTCA s rn3.chr10 45658130 7 - 110733352 CAACTCC s canFam1.chr9 18861097 7 - 53642819 CGTCACA a score=7835.0 s hg17.chr17_random 530114 49 + 2618010 AACAAGCCCCGTGTGCTGAAGAGAAGCAGGTCCCTTAGCTGAGGTCCAA s panTro1.chr19 26347274 49 + 82489036 AACAAGCCCCATGTGCTACAGAGAAGCAGGTCCCCTAGCTGAGGTCCAA s mm5.chr11 43087053 49 - 121648857 GGAAGGCCCAGTAGGGTGCAGAGGGGCTCTTACCTCTGTTGAGGTCTAA s rn3.chr10 45658141 48 - 110733352 GGAAAGAGCTGTAGGGTG-GGAGGGGCTGGTACCTTTGTTGAGGTCTAG s canFam1.chr9 18861104 19 - 53642819 -AACACCCCTGT-----------------------------CAGTCCAA a score=0.0 s hg17.chr17_random 530163 92 + 2618010 AGGCTGTGGGTCCTGCATGAGCCTGAAGTGGTGCACGTCCCTGGTCACATTGGAGGTGGAGAGCTTGGGGATCTGAATGTGCTGTTTGCCTT a score=41831.0 s hg17.chr17_random 530163 73 + 2618010 AGGCTGTGGGTCCTGCATGAGCCTGAAGTGGTGCACGTCCCTGGTCACATTGGAGGTGGAGAGCTTGGGGATC s panTro1.chr19 26347323 73 + 82489036 AGGCTGTGAGTCCTGCACGAGCCTGAAGTGGTGCAAGCCCCAGGTCACATTGGAGGTGTAGAGCTTGAGGATC s mm5.chr11 43087102 73 - 121648857 AGGCTCCGGGCTCTGGATGAGCCTATATTGCTGTGGCTCCCATGTTGCATTGGAAGTGAAGCGTTTCGGGATC s rn3.chr10 45658189 73 - 110733352 AGGCTCTGGGCTCTGGGTGAGCTTGTACTGCTCTGGCTCCCATGTTGCGTTGGAAGTGTAGCGTTTCGGGATC s canFam1.chr9 34782554 73 + 53642819 AGGCTGCGAGTCCTGCACGAGCCTGTATTGGTGTGGGTCCCAGGTCACATTGGAAGTGTAGAGCCTGGGGATC a score=11745.0 s hg17.chr17_random 530236 19 + 2618010 TGAATGTGC---TGTTTGCCTT s panTro1.chr19 35044563 22 + 82489036 TGAATGTGAGCATGTTTGCCTT s mm5.chr11 43087175 19 - 121648857 TGAATGTGA---TGTTTGCTTC s rn3.chr10 45658262 19 - 110733352 TGAATGCAA---TGTTTGCTTC s canFam1.chr9 34782627 19 + 53642819 TGAATGCAG---TGTTTGCCTC a score=1898.0 s hg17.chr17_random 530255 3 + 2618010 GGA s panTro1.chr19 35044585 3 + 82489036 GGA s mm5.chr11 43087194 3 - 121648857 GGA s rn3.chr10 45658281 3 - 110733352 GAA s canFam1.chr9 18861123 3 - 53642819 GGG a score=5695.0 s hg17.chr17_random 530258 30 + 2618010 TCTTTATTTGTGATTCAGAAACAGTGGAAT s panTro1.chr19 35044588 30 + 82489036 TCTTTATTTGTGATTCAGAAACAGTGGAAT s canFam1.chr9 18861126 24 - 53642819 TCTTTATTTGTGATTCAGAAACAC------ a score=15238.0 s hg17.chr17_random 530288 84 + 2618010 -AAAAGGAAAGGAAAGAAAACCGGAATGGCCACCTCAGCAGGATGCTC----CAAGGGTAGTGTCCAGGTGGCACTGACTCAGATATGT s panTro1.chr19 35044618 84 + 82489036 -ACAAGGAAAGGAAAGAAAACCCGAATGGCCACCTCAGCAGGATGCTC----CAAGGGTAGTGTCCAGGTGGCACTGACTCAGACATGT s rn3.chr10 65076074 85 + 110733352 -ATGGGGAAAGGAAACAAATCTAGCA-GGCCCTGTC-TCAGGACACCAAGGGCAAAGGTAGCATGCAGG-GATGCTCAGCCCAGCATAT s canFam1.chr9 18861150 81 - 53642819 AGCAGGGAA---AAAGAAAACCCCAC-TACTGTCACAGAGGGACACCC----CCAGGGTAGTGTCCAGGTAAAACTGACTCAGACACAT a score=100.0 s hg17.chr17_random 530372 1 + 2618010 G s canFam1.chr9 18861231 1 - 53642819 G a score=100.0 s hg17.chr17_random 530372 1 + 2618010 G s panTro1.chr19 35044702 1 + 82489036 G a score=0.0 s hg17.chr17_random 530372 1 + 2618010 G a score=76806.0 s hg17.chr17_random 530373 176 + 2618010 GGGGCTTCCCCCACCCATGCTCAAGAGCCACTTTGCCATTTCACCATCTCTCTGTCCTCCACACCCCTCAGCAGCAAGCACAACAAGAATGTGTTCACCATGAAGCTCAAATCTCAGCAGAATCT--AGAGTCTGAAATCCAAGTAAGGGAAAGTGTAGAGCTTCTTGGATGATGCCC s panTro1.chr19 35044703 176 + 82489036 GGGGCTTCCCCCACCCATGCTCAAGAGCCACTTTGCCATTTCACCATCTCTCTGTCCTCCACACCACTCAGCAGCAAGCACACCAAGAATGTGTTCACCATGAAGCTCAAATCTCAGCAGAATCT--AGAGTCTGAAATCCAAGTAAGGGAAAGTGTAGAGCTTCTCGGATGATGCCC s mm5.chr11 78562113 168 + 121648857 GGGGCTTTCCGCAGCACAGCACAGGAGAT-CTGTACCATT------TCTGTCTGTCTTTC-CAGCCCTCAGCAGCATCCATGCAAAGAACGTGTTTACCATGAGGCTGAAATCCCAGCAGAATCTGCAGAGTGAAAAGTCCAGGTAAGG--ATGGGCAGGGATGCTTAGCTGGTACCC s rn3.chr10 65076159 154 + 110733352 GGGGTTTCCCCCAGCACAGCATAGGGGCT-CTG-ACCATC------TCTGTCTGTCTCCT-CAGCTCTCAGCAGCATCCACGCCAAGAACGTGTTCACCATGAGGCTGAAATCCCTCCAGAATCTGCAGAGTGAGAAGTCCAGGTAAGG--ATG-------------GGCTGGTACAC s canFam1.chr9 18861232 176 - 53642819 GAAGCTACCCCCACCAGCACTTAAGAGCCACTTTTTCACTTCATCATC--TCTGTCTCCCACAGCCCTCAGCAGAATGCATGCCAAGAACGTGTTCACCCTGAGGCTCAAATCACAACGGAATCTACAGAGTCCAAAATCCAGGTAGGGGAGACTACCGGGCTGCTTGGGTGATGTTC a score=69428.0 s hg17.chr17_random 530549 399 + 2618010 TGTCAATTTTATTTT----------AACGAATGAAAGACCAGAAGAAGTCAGTCTT-GAAAGGAGAGGACAGGAGCATCTGC-TGGCATTAGCAGCCGTGCCATC-GTAGGACCGACTCACCTGG----ACCCGCGGCCACCTGTGCTTTTACATCTAGTCTTGGTTAACCATGGGCCACTTTTCCAGCTTGGAAACTAAGCATATGCTCCACTTCCTCTCCTTCCTCATTGAACTCTTTCACTAAAAGAACAGTGCAAGAGAGACTTAAACTGTTTGCCTCATTCTTAAGACCTTTCAGGAAAAGTGTT-GGCAGGGAAGGAAATCTCCCAGCTCTGGGAAA-CAGTCTTGTGGATTATCTGC----TGGTTTCAT-----TGATCTGTGCTGTCC-TCC--CTGCATTCATTAGGAAAACTGGCCTTG s panTro1.chr19 35044879 400 + 82489036 TGTCAATTTTATTTT----------AACGAATGAAAGACCAGAAGAAGTCAGTCTTTGAAAGGAGAGGACAGGAGCATCTGC-TGGCATTAGCAGCCATGCCATC-GTAGGACCGGCTCACCTGG----ACCCGCGGCCACCTGTGCTTTTACAACTAGGCTTGGTTAACCATGGGCCACTTTTCCAGCTTGGAAACTAAGCATATGCTCCACTTCCTCTCCTTCCTCATTGAACTCTTTCACTAAAAGAACAGTGCGAGAGAGACTTAAACTGTTTGCCTCATTCTTAAGAACTTTCAGGAAAAGTGTT-GGCAGGGAAGGAAATTTCCCAGCTCTGGGAAA-CAGTCTTGTGGATTATCTGC----TGGTTTCAT-----TGATCTGTGCTGTCC-TCC--CTGCATTCATTAGGAAAACTGGCCTTG s rn3.chr10 65076313 341 + 110733352 ----AGGATTGCTCTGG--------AATGCACAAAGAACCAGAGACAGTCAGTCTGTAGGCGGGGAGGG------------------------AGACAGGCCCCC-CAAGG---GGATCACTGTG--------GGGACCACCTTCTCT------GCTAGTC-----------TGTGCC-TTTGTCTGGTTTGGAAGCTGGATGTCTGCCTCACTGGCCCTTCCTCCTCTCTGAACTCT-------------CAGACCAGGGGACACGCAGAGCATCTG----AGTCTTCAGGCCTTTTGTG---GTTGTTAGGCAAGGGTGGGGATTTCCCAGCCAGGTGGAG-GAGGGTTGTGAGCGATCCGATCCGTGATTTTATCTGCATGGTCCCTCCTCTCCTTTC--CTCCTATCCTGGGGGAAAGTAGCCTCA s canFam1.chr9 18861408 408 - 53642819 TGCCGGTTTAATTTAAGACAAAACAAAACAAAAAAAGACCAGAGCCAGTCAGTGTTTGAAAGGAGAGAG-------GTGTACACAGCATTAGCGATGATGCCATCTGTAGGACCAGCTTGGCTGGTAACCCCTGTGACCTCCAGTGCCTTTAAGTTTGGTCTCCATTAACCATACACTGGTTTTCCAGCTTGAGAACTAGGCACCTGCTTTACCACCTGCCCTTTGTCACTAAACCCTTTCACCAAAGGTGGAGAGCAAGAGAAACTCAAACCATTTG----GCTCTTAAGAACTTTTAGGAAAAATTTT-GGCAGGTAAGGACATTTCCCCACCAGGAGAAATGGGTGTTATGCATTCCTTGT----GGGTTTTGT-----TCATTTGTGCTGTCC-CCCTGCCCCAATCATTAGGAAAACCAGCTTTG a score=38734.0 s hg17.chr17_random 530948 186 + 2618010 GTTCAAATAAGAACAGGATTTGTCCTGGTGACAGAGAAAGGTTTCTTCTGATGTCCATATATCTCCGA-GGGGGATGCTTTCTCCAGGCAGAGGCTGTGGCCAAGCGAT-CGGGGGGCTCAGAGG-GCTGCTGGGAAGGGGTGGGCCC--CTCTCTCCCCAGAGGGAAACTC-----CTGG---------GGACCTCTCGAGCAC s panTro1.chr19 35045279 186 + 82489036 GTTCAAATAAGAACAGGATTTGTCCTGGTGACAGAGAAAGGTTTCTCCTGATGTCCATATATCTCCGA-GGGGGATGCTTTCTCCAGGCAGAGGCTGTGGCCAAGCGAT-CGGGGGGCTCAGAGG-GCTGCTGGGAAGGGGTGGGACC--CTCTCTCCCCAGAGGGAAACTC-----CTGG---------GGACCTCTCGAGCAC s rn3.chr10 65076654 167 + 110733352 GTTCCAGTGAGAACAGGATTTGTTTTGGAGATAAAGAAGGGCTACCTCTAGTGTCCACACA-CTCTGA-ACGAGATGC-TCCTTGTGGCAAAAA-TGTGGCCAAGTGCTCCATGATACCCACA----CTTCTAGGGAAGGCTGTAGCC------------------AAACTCC---TCTGG---------GAAACTCTGGAGCAC s canFam1.chr9 18862136 203 - 53642819 GTTCTAATGAGAGCCAGATTTGTGCTGGGGACAAGGAAGGGTTTGTCCTAATGGCCACTGATCTCCCAGGGGGGATGCTCTCTTTAGATGGAGGGTGTAGTCAAGC-CT-GGCTGGGCTCGGGAGTGCTGCACCGGGAGGCTGCGGCCCACCCTTTTTCCACAGAGAAGCCCCAGGCCTGGTTGGCCACAGGCCCTCTTGAGCAC a score=1345.0 s hg17.chr17_random 531134 6 + 2618010 CCCTGC s panTro1.chr19 35045465 6 + 82489036 CCCTGC s canFam1.chr9 18862339 6 - 53642819 CCCAGC a score=291.0 s hg17.chr17_random 531140 3 + 2618010 CCA s panTro1.chr19 35045471 3 + 82489036 CCA a score=1692.0 s hg17.chr17_random 531143 6 + 2618010 tccttt s panTro1.chr19 35045474 6 + 82489036 tccttt s canFam1.chr9 34785382 6 + 53642819 tccttt a score=28570.0 s hg17.chr17_random 531149 171 + 2618010 aaacataaattcataaatacaaacaagtaggcc-attca--cagaaatatataaaa----------tatgtcataggacgggtggcactctcatatggcaataattatgacaggggccggcaaatgacCTGAGTGACCCGGAGTGACCTGAGCACTGACTCCCAAATGCCCTCCATAGGATGTT s panTro1.chr19 35045480 171 + 82489036 aaacataaattcataaatacaaacaagtaggcc-attca--cagaaatatataaaa----------tatgtcataggacgggtggcactctcatatggcaataattatgataggggccggcaaatgacCTGAGTGACCCGGAGTGACCTGAGCACTGACTCCCAAATGCCCTCCATAGGATGTT s rn3.chr10 45660890 143 - 110733352 AAACATAAATAAATAAATGTAATTAATCACCTC-AAGTAATCTGACATATATAAAGAAGAGTTGGTCAAGTCACAGGAAAG-------CCCTGTGTGCCAATG---------------GGGAAATGGCTTAAG-GACCCAGAGTGGCCCGAGT----AATTCCAGGT------CACA------- s canFam1.chr9 34785388 169 + 53642819 agacataaatttttgagtttaaaaaggtgagtcaattta--cttgaaaatataaaa----------tatgccattggaaaggcatcacgtacatatggtgagaattacaaagaaggcaggtaaacg--CTGGC-AGCCCAGAGTGATCTGAGCACTCATTTCCAAATGTCCTCCTTAGGACATG a score=4684.0 s hg17.chr17_random 531320 8 + 2618010 CTGCATCC s panTro1.chr19 35045651 8 + 82489036 CTGCATCC s mm5.chr11 43090264 8 - 121648857 CTGAGTCC s rn3.chr10 45661033 8 - 110733352 CCGAGTCC s canFam1.chr9 34785557 8 + 53642819 CTAAATCC a score=96397.0 s hg17.chr17_random 531328 262 + 2618010 CCGAGACCCTTTCCTGGGTCCTCCTGGG----------CCCTACCACCC----CCTAGACCATCCAGACCTCAGGTCATCCCCCTGTCTGTTGACAGAGTAGTCTCCGTTCCTGAATGTGCTGGTC---ACCAGCAACAGCAGCTGCTCCTCCTCCGGGAAGCTC----AGCCTATACTTCTACATGCAGAGAACCTGGACGGCACCC-AGGTGGACCTAAGCCTTCAGCTCCCAG---TAGACGCTCTGGGTTTCCTACCCTGCCCAGACACTCTGGGCTTCCCCC s panTro1.chr19 26350083 239 + 82489036 CCTGGACCCTTTCCTGGGTCCTCCCACA----------CCCTACAACCT----CCTAGACCAGCCAGACCTCAGGCCACCCACCTCTCCATTGCTGGGGCAGTCTCCATTGCCAAATGTGCTGGTCTCCACCAGCAACAGC---TGTGCCTCCTCCAGGCAGCTCTTCTAGCCTGTACTTGTCCATGCAGAGAACCTGGATGGTACCC-AGGTGGACATCAGCCCTCAGCTCCCAG---TAGATGCTCTGGGCTTCCT---------------------------CC s mm5.chr11 43090272 232 - 121648857 CCCGGACCCTTTCCTTGGTCCTCCCAAG----------CCTC-----------------TCTGCCGAGTCTCCGGCCACCCACCTGCCCATTGCTGGGACAGTCTCCATTCCCAAATGTGCTTGTCACCACCAGCAGTAGT---TGCTCCTCTTCCAAGGTGCTT----GCCTTATACTGGTCCATGCAGACAACCTGTGTGACAACC--GTTGAACATCAGCCCCCAGCTCCCAA---GGGGCCGCTTACACTCACT----------------CCAGACTCCTTCC s rn3.chr10 45661041 243 - 110733352 CCTGGGCCCTTTTCTTGGTCCTCCTAAG----------CCCCTCTGCCC----CC-AGATGAGCAGTGTCCCT-GCTACCTACCTGCCCATTGCTGGGGCAGTCTCCATTGCCAAATGTGCTTGTCACCACCAGCAGTAGT---TGTTCCTCTTCCAAGGTGTTT----GCCTTATACTGTTCCATGCAGACAACCTGTGTGGCACAC--CATGGATGTCAGCCCTCAGCTCCCAG---GGGGTCCCTTACACTCACC----------------CCAAGCTCCTTCC s canFam1.chr9 34785565 271 + 53642819 -CCAGATCCTTTCCTTGGCTCCCTTGGGGCCTGGCATCCCCCACAACCCTGCACCCAGACCA-CTGGGCCCCAGGCCACCCACCTCTCCATTGCCAGGGGAGTCTCCGTTCCCAAACGTGCTGGTCACCACCAACAGTAGC---TGCTCCTCCTCCAGGTGGCTC----AGCTTGTACTCGTCCATGCAGAGAACCTGCAAGGCCCCGGGGGTGGACATCAGCCCTGTGTTCCCAGGCCGAGGCCCTCTATGCCATCT-------CCAGATGCCCTGTGCTTCCTCC a score=7041.0 s hg17.chr17_random 531561 27 + 2618010 ACCCTGCCCAGACACTCTGGGCTTCCC s panTro1.chr19 35020010 27 - 82489036 ACCCTGCCCAGACACTCTGGGCTTCCC s mm5.chr11 43090482 20 - 121648857 ACACT-------CACTCCAGACTCCTT s rn3.chr10 45661262 20 - 110733352 ACACT-------CACCCCAAGCTCCTT s canFam1.chr9 34785807 27 + 53642819 GCCATCTCCAGATGCCCTGTGCTTCCT a score=27720.0 s hg17.chr17_random 531590 251 + 2618010 CACACCT------CCCCTCGTCCGGGGCTCCTGTGTGCATCTGTCTCTCCCAGTGCCCAGCACAGGCGTGGAACGGAAG-------------------AGGTGAATGGACCGATTTGAACACAtcatcctggattctccgttccct-ctcaagccctgcagctaacccatcggcaagccctggaggctctgcctccaaaatcctgccta-tcccatgtgcaaacgcctctcaccatgtccactgctaTTTGCAGTTCTGTGTGTGTGGAAATACTTCC s panTro1.chr19 26350322 251 + 82489036 CACACCT------CCCCCAGGCCAGGGCTTCTGTGCTCATCTGTCTCTTCCAGTGCCCGGCACAGGTGTGGCACGGAGG-------------------AGGTGAGTGAACAGATTTGAACACATTGtcctcggttctcc-ttccttgctcaagccctgaagctaacccgtcaggaagccctggatgctctgcctgtaaaatactgccta-tcctatgtccaaactcctctcagcacatccattgctaTTTACAGTTTTGTGTGTGTGGAAATATTTCC s canFam1.chr9 34785836 260 + 53642819 CCAACCCAGGAGACCCCTTATCA------CCTGTTTCCCCCCACCCCGCCCA-CGCCCAGCACCAGTGTGGTACAGGGGTGAGGGTTCTGTGAATCCCAGTCAAATAAACCTATATGAATACCTCGCTCCTCATCCTCC-TACCCCACTCAAGCCCCAACACCAACACTTCCACAAGCCCTGGAGGGCTTGCCTTCAAAATCCTGCTAAGTCCCAAATGAAAA----------CACTTCCACTGCTACTCTGAATTCGGAGTGTGTGGACGTATTTTC a score=54045.0 s hg17.chr17_random 531841 662 + 2618010 ACAAATTTGGAATGAACAGGTCACAGCTGTGCCTGGAGGGAATGGCCAGGGAAATGTGCCCTCGCCTTGCTGTTCTATCCAGGCCCACCCAGCTGAGGATGGGGGACCTGCCACCACTCTCCTGGCAGTTCCGGACTCCTGGGAACCGGCAGGTGAGGACCCAAGAGTGTTTTCAGTGACCCGGCTGACCTGGTCATCCGTCAGTCCCACCTTGGCCTAGGCCTCTATACAGCACAGATCACAGCTCATTCCATCCTGGCATTACACTGGCCTGTGCCCTGTCCTCAGGGTCACATCCGTCTCCCAGAAGCCGTG------CAACCCTGGAAAACCCA------GGTCTAACAGTCAGGTTCCTCCTCCGTGCATTAACAATGGAGTTGACGCCTGCTTTGCGGCACGCTGGGAGGGGAGAGGGAGGTGTATGCTGGAgagctccccaggggcaaggcctggctctgcgtcacccactgtcagatcctgagagcctggggctggcccagcacgtggccaccgttccctaagagttGGAT----TTCATCCCTCAGTGCTGAAGGCAGGGGATAGAGCTTAGACAGACCCCCTGCGTCCTGTCTTCTTTATCTACAGCTTTCTCATCCTTGCCCCTTTCACGTGCACCCGGCAGAGCAGGTGTTCACTGAGCTTGAGCA s panTro1.chr19 26350573 674 + 82489036 ACGAAATTGGAATGAGCAGGTCACAGCTGTGCCTGGAGGGAATGGCTGGGGAAATGTGCCCTCGCCTTGCTGTTCTATCCAGGCCCACCCAGCTGAGGATGGGGGACCTGCCACCACTCTCCTGGCAGTTCCGGAGTCCTGGGAGCTGGCAGGTGAGGACCCAAGAGTGTTTTCAGCAACCTGGCTGACCTGGTCATCCGTCAGTCCCACCTTAGCCTAGGCCTCTACACAGCACAGACCACAGCTCATCCCATTGTGGCATTACACTGGCCTGTGCCCTGTCCTCAGGGTCACATCCGTCTCCCAGAAGCCATGTGACCCTGACCCTGGAAAACCCATCAACCCGTCTAACAGTCAGGTTCCTCCTCTGTGCATTAACAATGGCATTGACGCCTGCTTTGCAGGGCGCTGGGAGGGGAGAGGGAGGTGTATGCTGGAGAGCTCCCCAAGGGCAAGGCCTGGCTCTGCGTCACTCACTGTCAGATCCTTAGATTCTGGGGCTGGCCAAGCATGTGGCCACCATTCCCTAAGTATTGGATTTGCTTCA----TCAGTGCTGAAGGCAGGGGATAGAGCTTAGACAGACCCCCTGTGTTCTGTCTTCTTTATCTGCAGCTTACTCATTCTTGCCCCTTTCACATGCACCCTGTAGAGCAGGTGTTCACTGAGTTTGAACA a score=123614.0 s hg17.chr17_random 532503 1522 + 2618010 AAATTCAAGCTAGAGCAGCTGATGGATCTTGAGGCCTAGATTCACTGTCAAAGTGTTTCTCAAACGGTGCTCTCCAGAACACCAAGGAAAACTCATTGACTGTGTAAGTCTGAAAATCCCTGCCCACCGGTCTACCTTTGTGTATGAGCAATCAGCTCTACCATTCAGCCCAGGTGTGTGTTTGCTGGACCATGTggaggaagctgaagagacgtgagctgaaggcagagggtgagtccaaggtgggatcttgggacaggtacgagaagttaggcaaaaatgggataattctagccttcataaccttagataatagttcacattattatttagttaatagaactgtacccacattaaatttcttaaattttttt--aagagataaagtctcactctgtcacccaggctgcagtgcagtggtgcaatcatggctcactgcttcctggaactcgtgggctccagcaatcctcctgcctcagcctcctgactaggtgggactataggcacacgccaccatgcctggctaatttctttgacttttctctagagaccgggtccacctaggtttcccaggctggtctcagacttctagactcaagtgaacctgaacctcccgcctcgacctctcaaattgctgggattacaggtgtgagccaccacacccggcctaaatttcttatgtgccatgggactgcaaaacatcattattaggggcagctggatggaaggtataggaggatactatagtgccttttcaatatttctgtctaaaatctaaaatcatttcaacaggaaacatttatttcaaaaCATGAAGGTGGTTATCCTTCCATGAGTTTGAAGTACAAAGGCAGGCTCACGGTGTCGTCAGAATTCAGAACGATGGTCGTGGGGCTGGGGGTGCTGGGAGGGG-CTGGGCATGGTTGGCTTTGTGATCTGGGGTCTGGTGTGTTCCATCTCTGAATCTCTCTCGAGCTGCACTCTTTCTTAATACATTTTCATAAGTTTAACCAAAAATAAAACGAGGATGCGAAGCTTGCTTGGGTTGTTAAGCCTAGGGAAATTATCCAGCCATGAGCCCTGGCCCAGATGCTTCTAGAAGCCTGGAGGGAACTGagaactttccaagtggaggccgcagaggcaaggccctgaggtgggagcacactgctgttcgTCCCTAGCTCTGAAGGGGGTGCCCTGGTCGGAATCAGTGCTGGGTGCA-------------------------------------------GCGAAAGCCGATCTCACCCGCTCCGCAGGGTGTTCAGCCTGCCAGCAGGGGGCCAGCTGGTCCTCCTGGGATATGGCACGGACCCAGCAGCTCTGTCTGAAATCATAATGGCGGAACCAAGGGCCCTCTACGTCCAGGTCCGTTGGGAGGCGGGGCATGGAGTTCCACTGCAGGAATCTCCAGGAACCCTGAGGTCCTCCCTGAGCCAGGGCCGGGCTGGGCACACCCTGAGTGCCCACAGGGTAGGTGTCTTCCCGGACAGCCCCACCAGGACAGGGTGTGGAAGAACGAGGTGCCCG s panTro1.chr19_random 46797474 1563 + 57627672 AAATTCAAGCTAGAGCAGCTGATGAATATTGAGGCCTAGATTCACTGTCAAAGTGTTTCTTAAAGGGTGCTCTCCAGAACACCATGGAAAACTCATTGACTGTATAAGTTTGAAAATCCCTGCCCACAGGTCTACCCTTGTGTATGAGCAATCAGCTCTACCATTCAGCCCAGGTGTGTGTTTACTGGACCATCTACaggaagctgaagaggcatgagctgaaggcagagggtgagtccgagatgggatcttaggacaggtatgagaagttaggcgaaaatgggacaattatagccttaataaccttagataatagttcacattattatttagttaataggattgtactcccattacatttcttaattttttttttaagagatactgtctcactctgtcacccaggctggagtgcagtggtacaatcatggctcactgcttcttggaactcatgggctccagcaatcctcctgcctcagcctcctgactaggtgggactataggcacatgccaccatgcctggctaatttctttgacttttctctagagacagggtccacctatgtttcccaggctggtctcagacttctagactcaagtgaacctgaacctcccacctcgacctctcaaattgctgggattacaggtgtgagccaccacacccggcctaaatttcttatgggccatgctactacaaaacgtcattattaggggcagctggatggaaggtgtaggaggacactgtagtgcctttacaatatttctgtata---tctaaaatcatttcaacaggaaacatttatttcaaaaCATGAAGGTGGTTATCCTTCCATGAGTTTAAAGTACAAAGGTAGGCTCATGGTGTTGTCAGAATTCAGAACGCTGGTCGTGGGGCTGGGGGTGCTGGGAGGGGGCTGGGCATGGTTGGCTTTGTGATGTGGGGGCTGGTGTGTTCCATCTGTGCATGTCTTTCAAGCTGCACGCTTTCTTAATAAATTTTCATAAGTTTAACAAAAAATAAAACAAGGATGCGAAGCCTGCTTGGATTATTAAACCTCGGGAAATTATCCAGCCATGAGCCCTGGCCCAGATGCTTCTAGAAGCCTGGAGGGAACCGAGAACTTTCCAAGTAGAGGTGGCAGAGGCAAGGCCCTGAGGTGGGAGCGCACTGCTGCTCGTCCCTAGCTGCAAAGGAGGTATCCCGGTCGGAATCAGTGCTGGGTGCACTGCAGGGCCGGGAAGTCCATGCCCACATTGTGGCTCAGTGCAGTGAAAGCCAACCTCACCCTCTCCGCAG--TGTTCAGCCTGCCAGCAGGTGGCCAGCTGGTCCTCCTGGGATATGGCACGGATCCAGCAGCTCCATTCAAAATCATAATGGGGGAACCAAGGGCCCCCTATATCCAGGTCCGTTGGGAGCTGGGGCATCGACTTCCACTCCACGAATCTCCAGGAACCCTGAGGTCCTCCCTGAGCCAGGGACAGGCTGGGCACACCCTGAGTGCCCATAGGGTACGTGTCTTCCCGGACAGCCCCACCAGGACAGGGTGTGGAAAAACGAGGTGCCCA a score=32230.0 s hg17.chr17_random 534025 265 + 2618010 TGGCGGGGAAGCTGACCAAATGGGCCGCGGGAACCGGGCTGGTGGGCCTGGAGGGGCCTGCCTGTCCCCCTTGCAGAGGGTCTTCCCGCCACGTGAAGCCGGCACAGGCCTGGATGCCGACGACCCTTG------------------------------CTCGGGTTTGGCTGAAAGGAAAACAGACGCGGTCAGCATCTCCAGTGAGCCCACGCAGGCCTTTCCGGGCTGGGCCCCACCTGCCTGCATCTC-GGAGTCCTCGGGGTCCCTGTGTGGCCCCCGTGGCCTGACACCG s panTro1.chr19_random 46799037 266 + 57627672 TGGCGGGGAAGCTGAGCAAATGGACCGCTGGAACTGGGCTGGTGGGCCTGGAGGGGCCTGCCTATACCCCTTGCAGAGGGTCTTCCCACCATGTGAAGCCGGCACAGGCCTGGGTGCCAAGGACCCTTG------------------------------CTCGGGTTTGGCTGAAAGGAAAACAGACGTGGTCAGCATCTCCAGTGAGCCCATGCAGGCCTTTCCGGGCTGGGCCCCACCTGCCTGCATCTCTGGAGTCCTTGGGGTCTCTGTGTGGCCCCTGTGGTCTGACACTG s canFam1.chr37 30785910 271 - 33897405 TGGCTGGGAGGGGGTCC----GGGCGGCTCAGGTTGGGTGGCTGGGCCTGGGGAGGCCTGCTCCTCCACCCTGGGTGGTAGCTCAGAGGCTGGAGAAGGGAGGAGAGGCCCGGGTGCCAGGGACACTCGCTCCAGGCCCAGGGGCCACGTGGGGAACTCCTCAGGTCCCGCTGGAAAG-AGGCAGATGGGGTCAGCGTCTCCAGCAGGC-----TGTGTGTTCCCAG--TGG------------TACATCCCCGGGGTCCTCATGGCTCCCGCGTGGCCCCC-CGGCCTGGCCCTG a score=63968.0 s hg17.chr17_random 534290 735 + 2618010 AGGACACGCCTGTAGTCTGCTGATCCCAGAGGGAGGGGTGCATGCTGCCTGGCGTGGGGAAGCTGTCGTGGCATGGCGGGTGGCTCCTGGGACTGCCCCCAGGGTTCAGACTGGCTGGGGGCTTCCTGCCACACACCTTCGTCCCAGGGCTGTTGGGCCTGGGATACGGCCCCCAGTCAGAACTCAGGTGGGAGGGGCCTTGGATGTCACCCAGCCCCTTGTCACCTCACGTGGGGACCCGTCTCCGCAGTGGGTGATTGGGCCCGGACGTGGGTCACCCTCTGCCCTCCTGGGCTGCCCAGTCCATGCCAGGACTGACCGTTCCCACTTCTGGCTGAACTCTTGGCTCTGGCTCTGGGCCC------------------TCTCCCTGAATGCTCTGTGGGTCAGGGACACG-GATTCCCTTGTCTCCCTGGCTCCAGGCTTCTTGTCCTGGCAACCTTGGAGGAGCGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTGGGTGCTTGCAGGGAGGGGCGGGGTCTCCCACAAATGGGTCTGGGCTCGTCTAGTAACTTGGAGGGCCCTGCGAGGGGGAGAGGGAGACACCGTGGAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCCCCTCCTGCGTGCACAGCATGTCCAGTATACACGCACTGAGCGCCTGCCCTGAGGACCGGTGGGCCTCCTGTACTTTCTTAGAGTCCAGGAGGAAGAGGAGGAAGAAAAGGT s panTro1.chr19_random 46799303 753 + 57627672 ACGACACGCCTGTAGTCTGCTGATCCCAGAGGGAGGGGTGTGTGCTGCCTGGCATGGGGAAGCCGTTGGGGCATGGTGGGTGGCTCCTGGGACTGCCCCCAGGGTTCAGACTGGCTGGGGGCTTCCTGCCACACACCTTCGTCCCAGGGCTGTTGGGCCTGGGATATGGCCCCCCATCAGAACTCAAGTGGGAGGGGCCTTGGATGTCACCCAGCCCCTTGCCACCTCACATGGGGACCTGTCTCCGCAGTGGGTGACTGGGCCCGGACGTGGGTCACCCTCTGCCCCCCTGGGCTGCCCAGTCCATGCCAGGACTGACCGTTCCCACATCTGGCTGAATTCTTGGCTCTGGCTCTGGGCCCGGGGTCCCGCCTGTGCCCTCTCCCTGAATGCCCTGTGGGTCAGGGACACCCGATTCCCTTGTCTCCCTTGCTCAAGGCTTGTTGTCCTGGCAACCTTGGAGGAGCGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTGGGTGCTTGCAGGGAGGGGCGGGGTCTCCCACAAATGGGTCTGG-CTCATCTAGTAACTTTGAGGGCCCTGTGAGGGAGAGAGCGAGACACCGTGGAAAGTGGGAGGGGGCTTGTTGGAGGGTCTTGCCCACATCCCCCTCCTGCGTGCACAACACATCCAGTATACACGCACTGAGCGCCTGCCCTGAGGACCGGTGAGCCTCCTGTACTTTCTTAGAGTCCAGGAGGAAGAGAAGGAAGAAAAGGT a score=6741.0 s hg17.chr17_random 535025 50 + 2618010 GAAGAGGAAGGCCCAGGTAGTAGGGTTGCGGGTCCCGGGCACTC-CCCTAC s panTro1.chr19_random 46800056 50 + 57627672 GAAGAGGAAGGCCCAGGTAGTAGGGTTGCTGGTCCGGGGCACTC-GCCCAC s canFam1.chr37 30786270 51 - 33897405 GAAGAGGAGAGCCCCAGAGATGAGGATGGTGGCCCCAGGGGCTCTGTCCCC a score=1275.0 s hg17.chr17_random 535075 15 + 2618010 TACTGACTACCCCAG- s panTro1.chr19_random 46800106 15 + 57627672 TACTGACTGCCCCAG- s canFam1.chr37 30786321 16 - 33897405 TGTGGGCAGCCCCAAC s fr1.chrUn 6498986 15 + 349519338 TAACGACGAGATCAG- a score=22410.0 s hg17.chr17_random 535090 248 + 2618010 AGGGTGACATGGGAGGGGACATGGCAC-TGGAGCCCACCTGGGGGTG---GCAGGTCCCCCTGCTTTCTTGTTAGTTTCTTCATAGAGGCCCTAAGATGCTTGAGCACAGTGTCCTCATCCCTGGCCCAGGTATCAACGAACCGGT--TGCAAAAACGTGCCCACGGGCCACACCTGGACGTCTTCGTGAGGCGCTCTAG---------GGACAGGGTGGATATCAGGCCAGGGGAGTTAC--CTGGGA-ATGGTCACAGCTCATA s panTro1.chr19_random 46800121 248 + 57627672 AGGCTGACATGGGAGGGGACATGGCAC-TGGAGCCCACCTGGGGGTG---GCAGGTCCCCTTGCTTCCTTGTTAGTTTCTTCGTAGAGGCCCTAAGATGCTTGAGCACGGTGTCATCATTCATGGCCCAGGTATCGAAGAATTGGTTCTGC--AGACGTGCCCACAGGCCACACCTGGATGTCTTCATGAGGCGCTCTAG---------GGACAGGGTCGATATCAGGCCAGGAGAGTTCC--CTGGGA-ATGGTCACAGCTCATA s canFam1.chr37 30786337 224 - 33897405 AGGCCGAGTCGGGAGGGGCCAAGGCCC-T-GAGCCCACCTGGGGGGGGGTGCAGGTCGCACCGCATCCTCCGGAGCTGGGTCATGGAGGCCAGAAGGTGTCTGAGCACCGCCTCGTCCTCCAGGGCCCAGGGCTGGGCCAGAGAGTCCTGG--AGGAACTCCCGGAGCCCTTCCAGGGGCAGCTTCAGGAGGCGCTCTGG---------GCGGTGGGCGAGAGTCAGACCCAGAGGG----------------------------- s fr1.chrUn 6499001 224 + 349519338 AAG----CACAGGAAAGCTAAAGGCGT-CAG----CACCTGGTGGAG---GTTGGGCCAGCTTCTTACTGCGCAGCTCGGCCATGGCGGCCTGCAGCTGCTCGATCACCACGTCGTCAGGGAGGAAGAAAGAGACGGCCAGCCGCTCCTGG--AGAAACTCTCTCAGGTCCTCCAGCTGAAGTTTCTGCAGGTGCTCT------------GATAGGACGCGGCACAGACACAAA----------------ATATTAATGCCATTTT s danRer1.chr4 14508567 261 - 30025136 ATGATTACATGTGTGTGCACATTGTGTGTTTAATGTACCTGGAGGTG---GCAGCTCCAGTTTAGACCGTCTGAGCTCAGACATGGAGTTTTGAAGCTGCTCTATAACAAAGTCGTCCTCAAAAAAGAAATCGTTTGACAGAGTCACCTGT--AGAAACTTCACCAGCTCCTCCATAGACAGCTTCAAAAGTGTTTCTAACACAAAAACACACAAAGAACACTTTACACACAGGAGGTTACAACTGGGACATGTTCAAAGTCTTTA a score=1259.0 s hg17.chr17_random 535338 88 + 2618010 TCCCGTGGCCACTTCAGTCTCCTACTGGGCGGTGCCGGATCCTTTTGTGGCCACCCCAGGTGTCCAGATATACACAGGAG-ACTGTGGC s panTro1.chr19_random 46800369 88 + 57627672 CCCTGTGGCCACTTCAGTCTCCCACTGGGCGGTGCCGGATCCTTTTGTGGCCACCCCAGGCATCCAGATGTACACAGGAG-ACTGTGGC s canFam1.chr37 30786561 36 - 33897405 CCCCG-------------------------------------------------CCCTGGGGCCCCGCTGTGCCCAGGAGCGCCG---- s fr1.chrUn 6499225 49 + 349519338 TAATGTGAGCAGTTCG------------------------------------ACTACAGGA---CAAACACGCAGCGGAG-ACAGAAGC a score=3788.0 s hg17.chr17_random 535426 35 + 2618010 TGGGGGGCGATCCGGACAGGGAAGTGCTCACCACA s panTro1.chr19_random 46800457 35 + 57627672 TGGGGGGTGATCTGGACAGGGAAGTGCTCACCACA s canFam1.chr37 30786597 32 - 33897405 TGGGCAGTGCGCTGGCCGGGGTGGCCCCTGCC--- a score=5278.0 s hg17.chr17_random 535461 184 + 2618010 CTCTCGACTTTCATCTGGGTCATGTGGGGGATGGGCTCAGTGTCA--CAGTGTCCTGCCCAGCCCACCTGGCCGGACCTCCCTCTGGGCCAGAACAGCG----GATCATGAGGACAGTGTGAGGAAGCTGCC--------CTCGGGCCAGTCGGGGTCTGACCCCAGGG------------CTCCCCAGGCCCCGCTGGGCACACGTAG----A s panTro1.chr19_random 46800492 184 + 57627672 CTCTCGACTTTCATCTGGGTCATGTGGGGGATGGGCTCGGTGTCA--CAGTGCCCTGCCCCGCCCACCTGGCCAGACCTCCCTCTGGGCCAGAACAGAG----GATCATGAGGACAGTGTGAGGAAGCTGCC--------CTTGGGCCAGTCGGGGTCTGACTGCAGGG------------CTCCCCAGGCCCCACTGGGCACACGTAG----A s canFam1.chr37 30786629 135 - 33897405 ----CGCTGCTCCTCTCAGGCA-----------------------------GCCCCGCTGCACCCGCCTGCCCTGCCATCCCCCCGCCCCAGGTCTGGGTGCTGCTCA-GAGCACAGGGTCA-----CTGCC--------C----------------CTGCCCCC----------------CGCCCCTGGCACACCTGGACTCCCAGGGGCTCA s fr1.chrUn 6499295 201 + 349519338 CAATGTGCTGTGGTCTGGGCCA----GCGGAAGCGCCCAATGAAAGTGAGTTTTCCACTCCTCTC-CACGGCAACCCAGCCACTTGTGTTATGTAAGCAATCCAGTTA-GGAGGCAGC-TGAGCGAGTAGCCGAGCGAGACCTAATCCACACAGCGACTGCCGCCTTGGCGGAATCTGGTTTTCATCTGGCACAGCT---CAGACGCCG---CA a score=44351.0 s hg17.chr17_random 535645 109 + 2618010 CTTACTCTGCTGAACCTTAAAGGCGATTCTTGTTATCGGCATCAACGCCTGTTCGCCTTCTACCAGATACACGTCCCACAGGCGCAGGGTGAGCCCGAGAGAGATCTGT s panTro1.chr19_random 46800676 109 + 57627672 CTTACTCTGCTGAACCTTAAGAGCAATGCTGGTTATTGGCATCAACACCTGTTCTCCTTCCACCAAATACACGTCCCACAGGCGCAGGGTGAGCCCGAGAGAGATCTGT s canFam1.chr37 30786764 108 - 33897405 CTTACTCCTGTGCACCTTGAGGATGGTGTAGGCCATGGCCGTGAGCACCCTCTCCCCATCGAGTACGTAGGCATCCCACAGCTTCAGGGTGAGCGAGAAGGGGGTCTA- s fr1.chrUn 6499496 109 + 349519338 CTCACTCTTGTGTAACTTGAAGGTCGTGTAAGCCATCGCAGTCAGCGTCTTCTCTCCGTCCAATATGTAGATGTCCCAGAGACGCAGGGTCAGGGTGAACGGGGTCTGT s danRer1.chr25 3286137 109 - 17189730 CTTACTTTTGTGCAATTTGAGGAGAGTATAAGCCATGGCTGTCAGAACCTTTTCTCCTTCTAATATGTAGATATCCCAAAGACGTAAGGTGAGTGTGAAGGGAGTCTGT a score=0.0 s hg17.chr17_random 535754 1 + 2618010 G a score=300.0 s hg17.chr17_random 535754 1 + 2618010 G s panTro1.chr19_random 46800785 1 + 57627672 G s canFam1.chr37 30786872 1 - 33897405 G a score=3901.0 s hg17.chr17_random 535755 77 + 2618010 GGGACAGCAGGTGTGAAAGAA----CCTGGTC---------------CTT--------CCAGGCT----GGGGCTGGTGGCT-----CGAGCTGCGCACACTGGGGCTTCA-GT s panTro1.chr19_random 46800786 77 + 57627672 GGGACAGCAGGTATGAGAGAA----CCTGGCC---------------CTT--------CCAGGCT----GGGGCTGGTGGCT-----CGAGCTGCGCACACTGGGGCTTCA-GT s canFam1.chr37 30786873 109 - 33897405 GGGACAGCGGG-GTGGGAGGAGCGGCCTGAGCAGGGCCCCGGGGGGGCTTGGCTGGGGCCAGGCT----AGGCCTGCCATCTGCCCCCCGGCTGCCTCCGACGAGGCCCCACAG s danRer1.chr25 3286246 81 - 17189730 AAAACAGAAAC-ACAGCAGAA----ACAGGTC---------------ATC-------ACCAGGCTAAAGAGAGCTCAAACAT-----CAGCCCACTCATATAAAACCTTCA-GT a score=96866.0 s hg17.chr17_random 535832 1224 + 2618010 CTCCAGAGTCAGTGACCTTC-CCCATGAGGGTCGCCTGAGCCCTCCAGGACGCT---GGGTCAGACAAGGTCTTGAAGCTCCT-----CAT-GGGGG----------GCACTCATTTGAGTGGGGATGTGGCTCCTGGAGAGAG----GGGCTTGCCCAGGGCTTGAGGCTTCCCTGAGCCCTCTCAAGTCGGGTCCTGGCCCAGTCTGCCC--------ATGAGGCTG----GGCCTGAGCCCCAGCCATGGCCCTGGGATGACCCCCCTTGGGC-------AGAGGGTTTTGCTTGTGTGTC----CTTTGGGGACCC--------GCCTGAGCCTCCTGTGGGCTGGGAGTGAGCCAGACCCCCGGGCTGGGGAAGCAGGGCACTGCAGGGCAAGGAAGGTCCCTGAGCCAGGGTCTCCCTATGCCTCCTTACCCCGTCAATCAATATCCGGATGAGGCAGCCTAACGGGGAACACTGCCCACATAGATCT--TTCTTGTCCTGATGGAAGC-AACAGAGGTGCTCAGG--CCACTGGGCTGCCCTAAAAACC-------TCCCTCTTCCAGGGCCTCTGAAGACCCTTCCCCTAGTGCAGAACACTGGGCGGTGTCCAGAGCTCCCCACAACACTGTCACCTTCCCACACTCCCGGTGGACACACTGCCCTTTGCCCTGCTCTGCGGGAGCTGGGCCCCCATCCCTGTGCCTC------------------TGT-CTCCTCCAGGGCAGGAA-----------AGGAAACCAACTCCCAGCCCATGGAGAACCCGACGTCCCAGGTCAGGCCCTGG----CTGGGACTCAGCCAGTCACCAGCCCCACGAGGGGCTCCAGCCCCCCTG--------CTCCTACAGCCCCA--CGGGAGGCAGGGCCTCTGGGAAGAGCTGAGGGGACCATAAACTCACCTGATGCCCCATGGTCTTGGGTTGTGACGTGGCTACCACATGCTCCTGTTGGTCTTGGAGCCCCTGGACGGTCCCGCCATTT----------GGGCTGT-----------------------------------------------------------------------GAAATCCTGAGAAGCCCCCAGCCCATCATGAAATCAGAGCCTTCCCCCAAGATGTGGAGCCATCAGCTGCAAGAGCTGGGCAGCTGGAGAGGCCCCCAAACCCCAAGGCCTCCCACCCTCCCATCTGGTGACCCCAACATGCGGCCTTTACCCTG-GGGAGGTGGGGCGGGAACATTCCCTGGAGCCTGGCTGGAGGTTCCCCTGGAGGCCTCCTGGGCCA--GGGTGCAAAAAGGGCAAGCCTGACTTTCAGGCCACGACAGGGTGGCCGGAACTGGGTGGGCGCTGGGC-TTCCCGGTCATCT------CCT s panTro1.chr19_random 46800863 1227 + 57627672 CTCCAGAGTCAGTGACCTTC-CCCATGAGGGTCACCTGAGCCCTCCAGAATGCT---GAGTCAGAAAAGGTCTTGCAACTTCT-----CATGGGGGG----------GTACTCATTTGAGTGGGGATGTGGCTCCTGGAGAGAG----GGGCTTGCCCAGGGCTTGAGGCTTCCCTGAGCCCTCTCAAGTTGGGTCCTGACCCAGTCTGCCC--------ATGAGGCTG----GACCTGAGTCCCAGCCATTGCCCTGGGATGACCCCTCTTGGGC-------AGAGGGTTTTGCTTGTGTGTC----CTTCGGGGACCC--------GCCTGAGCCTCCTGTGGGCTGGGAGTGATACAGACCCCCGGGCTGGGGAAGCAGGGCACTGCAGGGCAAGGAGGGTCCCTGAGCCAGGGTCTCCCTATGCCTCCTTACCCCGTCAATCAGGTTCCGGAGAAGGCAGCCTAACGAGGCACACTGCCCGCATAGACCT--TCCTTGTCCTGATGGGAATGAACAGAGGTGCTCAGGGCCCCCTGGGCTGCCCTAAAAACC-------TCCATCTTCCAGGGCCTCTGAAGACCTTTCCCCTATTGCATAACACTGGGCGGTGTCCAGAACTCCCCACAACACTGTCCCCTTCCCACACTCCCGGTGGACACACTGCCCTTTGCCCTGCTCTGCAGGAGCTGGGCCCCCATCCCTGTGCCTC------------------TGT-CTCCTCCAGGGCATGAA-----------AGGAAACCAACTCCCAGCCCATGGAGAACCCAAAGTCCCAGGTCAGGCCCGAG----CTGGGACTCCGCCAGTCACCAGTCCCACAAGGGGCTCCAGTCCCCCTG--------CTCCTACAGCCCCA--CAGGAGGCAGGGCCTCTGAGAAGAGCCGAGGGGACCATAAACTCACCTGATGCCACATGGTCTTGGGTTGTGACTTGGGTACCACATGCTCCTGTTGGTCTTGGAGCCCCTGGACTGTCCCACCATTT----------GGGCTGT-----------------------------------------------------------------------GGAATCCTGAGAAGCCCCCAGCCCATCATGAAATCAGAGCCTTCCCCCAAGGTGTGGAGCCATCAGCTGAAAGAGCTGGGCAGCTGCAGAGGCCCCCAAACCCCAAGGCCTCCCGCCCTCCCATCTGGTGACCCTACCATGCGGCCTTTGCCCTG-GGGAGGTGGGACAGGAACATCCCCTGGAGCCTGGCTGGAGGTTCCCCTGGAAGCCTCCTGGGCCA--GGGTGC-AAAAGGGCAAGCCTGACTTTGAGGCCACAACAGAGCGGCCAGAACAGGGTGGGTGCTGGGC-TTCCTGGTCATCT------CCT s canFam1.chr37 30786982 1188 - 33897405 CCCCCCCGTGCGTGCCCTCCTCCCAGGGAGATC-----AGGGCTCCCGGCCGCTCCGGGTTCCGACCCCGGCCAGCACCTCCTGCACCCCT-GGGGGCACAGACTCTGCCCACACTTGA----CGACACCACGCCTCGAGAGGACCCCAGGTTGGCC----GCCCAATGGGCCCTAGGGCCCGTCCACACCCCAGGCTGACCCAGCCTCCCCCGGGGGAGCTGAGGCAGAGACGGCCCGCCCCCCGGAACCTCGTCCAGGACGAGGGCTTCTGGGCTTCTCCAGGACGGGCTGGGCTGCGAGCCTCAGCCTCAGGGCCCCAGGGTCGGGCCTGGCTCGTCTGGAGGGTGGGGCTGAGCTGGGCACTC--CCTGGGG------------GCAGGG---GGCAGGTCC--GGGACTGGGGGTCCCGGGGGGGCCTCACCCGGCTGAGGAAGCATTGGAGAAACCA-CTTGGGGGTGTAGATT-CCTGTGCACATCTGCTCCTCGTCCTGGTGGAAGG-GCAGGAGGTGCTCAGGCCCCACGCCGCGGCACCTGGAGCCAGGTGGACGTGCTCCCCAcggcccc-----gcccagccccgagggc---gccccgggc----cccAGAG-------GAGGATTGTGAC---CCCA-ACTCTGGGCAG-CTCAGAGGGCCGTGCCCCCCACCGCCTGCCCCGGGCCCCGGGGCCGGAGCCTCAGGAGCTCCCACTCGCCATGTGCTTCTTCAGGTCGGGGAGAGCTCTTTGGAGGATGCC---------CTCGTGATGAGCCTGGAACCTGAGG--AGCTTCGGGAAGCCCGGGACGAAG---------AAGCCTGAGAAGGCCCCAGGCCCCCACGGTCAGGGCCTCCTCCTGCACCAGGCGGGATGGGGGGTGTCGGGGCAGGGGC--------------CTCCCCCCACGCCC---------------TGAC-------CCCCGTGTGCCCACCGCCCTCGGAG-CCCTGACTGGACCCGCTCTTCCCAGAGGGCAGGGCTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggccgggggcgcggggcccggggACCCTCCTCCTCA---------CAGAGAC--CCCGCGGGGCGTGG-----------------GCTGGG-GGCTGAGGA-------------CCAGGCC--------------CAGCTGACCCA-----GCACCCTCTCTCCTGCAGGGGCCGCTGCGGGGACA-----------------GGCGGGTCCCC----AGCCCCGAGGGGCAGTGGGTGC----------------------AGGCCACA-----------------GGGAGGGTGATGGGCGTGCACGGCCCTCTGTGGGGCTT a score=13700.0 s hg17.chr17_random 537056 57 + 2618010 GGTAGTGGGGTCGGGCCAGGGAACAGGGGATGGGGAGATGCTGCCACCTGGGCTTGG s panTro1.chr19_random 46802090 57 + 57627672 GGAAGTGGGGTCGGGCCAGGGGACACGGGATGGTGAGATGCTGCCATCTGGGCTTGG s rn3.chr8 67319807 57 + 129061546 GGGGGTCTGGTTGGGTGAAGGGACAGGAAAGAAGGTGAAGCTTCAACCTGGGTGTGG s canFam1.chr37 30788170 53 - 33897405 GGGAGTGAGGCTGGG----GGCCCCCGGGAGGGGGAGACGCTGCCCCCTGGGCCCTG a score=17362.0 s hg17.chr17_random 537113 146 + 2618010 TCGGCCCATTCGTGGGCACCGA-TGGCAGCAGGAGCCCGGGCAGC---------------TGGAGGGCAGGAGGACTCTCAGGGAGGGGAGAGTCAGCTGCACAGAATCAGAGCCGGAGGGCGTGGCTCCAGGACACAGAGGGTGGCCACGGGGAGGATGAG s panTro1.chr19_random 46802147 146 + 57627672 TCAGCCCATTTGTGGGCACCAA-GGGCAGCAGGAGCCCAGGCAGC---------------TGGAGGGCAGGAGGACCCTCAGGGAGGGGAGAGTCAGCTGCACAGAATCAGAGCCGGAGGGTGTGGCTCCAGGACACAGAGGGTGGCCATGGGGAGGATGAG s canFam1.chr37 30788223 147 - 33897405 ----------TGTGGCCATGGGCTGGCAGGGGGGGCCTGGGGGGCAAGCAGGCAGCCGAGTGGGAGGCTGGGGGAGCAGCGGGAGTGTGAGCCCCGCCTGCAGACGGT-GGGGCGGGCGGCCGTGGCTCCGGGACCCCAA----GGCCACTGGGGAGGTGGG a score=0.0 s hg17.chr17_random 537259 2 + 2618010 AT a score=182.0 s hg17.chr17_random 537259 2 + 2618010 AT s panTro1.chr19_random 46802293 2 + 57627672 AT a score=7541.0 s hg17.chr17_random 537261 191 + 2618010 GCCCTCTGCTGATGGGGATGACAGGCGTCTGATTTGGGCTTTGGGGGTCAGCCGTGGACTCCTGTGGGACCCTC--AGCAG-AGACATTCTAAAGTCTCCCAACAAGCTGGCGACACAAGGAGGGT-GCCTTGGCTGAAAGCTGTGATCACCTGGCCAGGGTGGCCATCCCCAGGTCTGGCTGCAGGAGGTCCCC s panTro1.chr19_random 46802295 191 + 57627672 GCCCTCTGCTGATGGGGATGAAAGGCATCTGACTTGGGTTGTGGGGGTCAGCTGCGGACTCCTGTGGGACCCTC--AGCAG-AGACGTCCTAAAGGCTCCCAACAAGCTGGCGACACAAGGAGTGT-GCCTGGGCTGAAAGCCGAGATCACCTGGCCACAGTGGCTGTCCCCGGGTCTGGCTGCGTGAGGCCCCA s rn3.chr1 66587785 149 - 268121971 GTTCTCTGCTGATGGGGACACAAGGGG----------------------ATCCTTTGACATTCCCGAGACCATC--TACAGCAGACAGTCCAGTGGTTCAGAACAGG--------GAAGGAAAGGT-------GCTATAAATTGTCACTAGTTAGC-----TGGCTGTCACCCAGCCTAGCTATTT--TGTGCCG s canFam1.chr37 30788370 116 - 33897405 GCCCTTGGCCCGTGGGG-----GGGCG---------GGCTGGGGGGGT-----------TCCCGCCTGCCCCCCGGTGCAG-CAGCAGCCT------------------------GCAGGGAGGCCCTCCTGAGCT-----CCCCTCCCACCCGGT-----------------GGCCCGGCG------GGCCCC- a score=0.0 s hg17.chr17_random 537452 14 + 2618010 GGGGCAGCTGTTCA a score=1142.0 s hg17.chr17_random 537452 9 + 2618010 GGGGCAGCT s panTro1.chr19_random 46802486 9 + 57627672 CGGGCAGCT s rn3.chr1 66587934 9 - 268121971 TGAGAGGCT a score=931.0 s hg17.chr17_random 537461 5 + 2618010 GTTCA s panTro1.chr19_random 46802495 5 + 57627672 GTTCA s mm5.chr2 175314005 5 - 181686250 GCTTT s rn3.chr1 66587943 5 - 268121971 GTCTA a score=1422.0 s hg17.chr17_random 537466 2 + 2618010 CT s panTro1.chr19_random 46802500 2 + 57627672 CC s mm5.chr2 175314010 2 - 181686250 CT s rn3.chr1 66587948 2 - 268121971 CT s danRer1.chr25 3291305 2 - 17189730 CT a score=191.0 s hg17.chr17_random 537466 2 + 2618010 CT s danRer1.chr25 3291305 2 - 17189730 CT a score=106351.0 s hg17.chr17_random 537468 136 + 2618010 TACCCTGCAGGGAGTGCCTCTCACTGGCCAGCAGCTGCACCAGTGCCCAGAATGCATCCTCCTCAGGAAGATAGAGGAGGAACAAGGCGGCGATGTGGCTCAGGTCCCTGCAGTAGCCCACCTCC--TGCAAGAGCCA s panTro1.chr19_random 46802502 136 + 57627672 TACCTGGCAGGGAGTGCCTCTCACTGGCCAGCAGCTGCACCAGTGTCCAGAATGCGTCCTCCTCAGGCAGATAAAGGAGGAACAAGGCGGCGATGTGGCTCAGGTCCCTGCAGTAGCCCACCTCC--TGCAAGAGCCA s mm5.chr2 175314012 136 - 181686250 TACCGTGCATTGCGTGCTTGGGGCCCGAGAAGAGCTTGACCAGGGCCCAGAAGGCGTCTTCCTCGTTCATGTACATGAGGAGCAAGGCCGTGATCTGACTCATCCCTTGGCAGTACCCGACTTCC--TAAGAAAGGGA s rn3.chr1 66587950 135 - 268121971 TACCTTGGATAGTGTGCTGCTTATTGATCGGCTACTGGAACAGTACCCAAATAGCATCTTCCTTATTGAGGACCATTGTCAGGACAGAAGTAACCTGGCCCATGCCTAGGCAGTGGCTT-CTGCT--TTCAGGAATCA s canFam1.chr37 30788486 130 - 33897405 TACCGTGCATGGCGTGCCT---GTCGGTCATCAGCTGGGCCAGCGCCCAGAAGGCGTCCTCCTCGGGCAGGAACATGAGG---ATGGCCGCGATCTCGCTCGTGCCCTGGCAGTAGCCCACCTCC--TGCAAGAGCCA s fr1.chrUn 6500189 132 + 349519338 TACCGTGCATGGCGTGCTTGCTGTTGGTGAGGAGCTGCGACAGCGCCCAGAAGGCATCTTCCTCGTTCAGGTACATGAGCAAGATGGCGGCGATCTGACTCATCCCCTGGCAATAGCTCACCTCC--TGGTGAA---- s danRer1.chr25 3291307 138 - 17189730 TACCATGCATGGCATGTTTCTGATTGGTCAGTAGCTGTGATAAGGCCCAGAATGCATCCTCCTCATTCATATACATAAGCAGAATGGCAGCAATTTGGCTCATCCCCTGACAGTAGCTCACTTCCTATACAAAAACCA a score=1386.0 s hg17.chr17_random 537604 2 + 2618010 GA s panTro1.chr19_random 46802638 2 + 57627672 GA s mm5.chr2 175314148 2 - 181686250 GA s rn3.chr1 66588085 2 - 268121971 AA s canFam1.chr37 30788616 2 - 33897405 GA a score=4927.0 s hg17.chr17_random 537606 14 + 2618010 GTCACCATGGAAGG s panTro1.chr19_random 46802640 14 + 57627672 GTCACCATGGAAGG s rn3.chr1 66588087 14 - 268121971 ATCATTATGGGAGG s canFam1.chr37 30788618 13 - 33897405 -GCCCCACGAAGGG s fr1.chrUn 6500321 14 + 349519338 AACACCGGAGAAGA a score=471.0 s hg17.chr17_random 537620 2 + 2618010 AC s panTro1.chr19_random 46802654 2 + 57627672 AC s rn3.chr1 66588101 2 - 268121971 AG s fr1.chrUn 6500335 2 + 349519338 AC a score=4816.0 s hg17.chr17_random 537622 31 + 2618010 ATCACCTGGGAGGGCTGAGGTCACCTGGGAG-------- s panTro1.chr19_random 46802656 31 + 57627672 ATCACCTGGGAGGGCTGAGGTCACCTGGGAG-------- s rn3.chr1 66588103 31 - 268121971 ATCACCCAAGATGGCTGAGGTCTCCTGGGGG-------- s fr1.chrUn 103988103 39 + 349519338 AGACCCTCAGACAGATGCTGCACCCCGACCGGGCAGAGG a score=3203.0 s hg17.chr17_random 537653 32 + 2618010 GACTCA------TGTCATTGGAGAGGGCAGAGGTGACT- s panTro1.chr19_random 46802687 32 + 57627672 GACTCA------TGTCATTGGAGAGGGCAGAGGTGACT- s fr1.chrUn 103988142 39 + 349519338 AACTCACCGTGTTGTAGATGGAGTAGGCCGTGAGGACGT a score=2903.0 s hg17.chr17_random 537685 52 + 2618010 GGAGAGGCTTCCTCTGAAGGAGAGGCTTCCTCTGAAAAAGAGGCTTCCTCAG-------- s panTro1.chr19_random 46802719 34 + 57627672 GGGGAGGCTTCCTCTGGAG------------------AAGAGGCTTCCTCAG-------- s mm5.chr8 83449272 52 - 128688707 GGGGGAGCTTCCTCAGCAGGGGGAGCTTCCTCTGCAAGGGGAGCTTCCTCAG-------- s fr1.chrUn 103988181 48 + 349519338 GGAAGAGCGCCTGCTG-----------TCTGCCGAAACAGAGA-GCAATCAGTGTCACTT a score=100.0 s hg17.chr17_random 537737 1 + 2618010 G s fr1.chrUn 103988229 1 + 349519338 G a score=100.0 s hg17.chr17_random 537737 1 + 2618010 G s panTro1.chr19_random 46802753 1 + 57627672 G a score=5801.0 s hg17.chr17_random 537738 53 + 2618010 ATGCACATTCATTTCA----TGACAAGAGCCAAGTCCATCAGGCACTTCAGCACCTT s panTro1.chr19_random 16293366 53 - 57627672 ATGCACATTCATTTCA----TGACAAGAGCCAAGTCCATCGGGCACTTCAGCACCTT s fr1.chrUn 103988230 52 + 349519338 GTAAACATATAGGTCAAGTTTGACAG----CAGGTCAATAATGTATTTC-GCTCCTT a score=31320.0 s hg17.chr17_random 537791 331 + 2618010 GTCCAAAATGTCTGCTGATAGCACCATCCTGTGTGCGATGCTGCCAAGCTCCTGGGCTTTGGGGCAGCCCCAGGAGGAGGGCGTCATTTCTTGTTCTGAGAAGTGGTGGTCAGGCCCAGGTGACACCAGGAGTCCAGGCCCTGACTCCTTTGTGTCTCAGCTTGACCCCTTGAGACCACCCCCTTCCTTGGAGGTTTATGCCAGCGGTGAGCTGACATCCTACCTCCTATATCCTGGTGGGTCACAAATACTAACTTTAAAAGAAGCAACGACACCCCCACCAGACACCCACTCCTGTCAATATGGAAATATGGCCCGGGAACCTCACTGC s panTro1.chr19_random 16293419 331 - 57627672 GTCCAAAATGTCTGCTGATAGCACCATCCTGTGTGCGATGCTGCCAAGCTCCTGGGCTTTGGGGCAGCCCCAGGAGGAGGGCGTCATTTCTTGTTCTGAGAAGTGGTGGTCAGGCCCAGGTGACACCAGGAGTCCAGGCCCTGACTCCTTTGTGTATCAGCTTGACCCCTTGAGACCACCCCCTTCCTTGGAGGTTTATGCCAGCGGTGAGCTGACATCCTACCTCCTATATCCTGGTGGGTCACAAATACTAACTTTAAAAGAAGCAACGACACCCCCACCAGACACCCACTCCTGTGAATATGGAAATATGGCCCGGGAACCTCACTGC a score=1269.0 s hg17.chr17_random 538122 7 + 2618010 CGGGAAT s panTro1.chr19_random 16293750 7 - 57627672 CGGGAAT s canFam1.chr37 30789348 7 - 33897405 CAGGGAC a score=17382.0 s hg17.chr17_random 538129 81 + 2618010 ACTCACCGGGTTATACTCCTCATATGCCAGGAGGATGTGGAGTAGTTCCCGCTGCCTAGGAAACAGAGAA--AGGGGGCTTTG--- s panTro1.chr19_random 16293757 81 - 57627672 ACTCACCGGGTTATACTCCTCATACGCCAGGAGGATGTGGAGTAGTTCCCGCTGCCTAGGAAACAGAGAA--AGGGGGCTTTG--- s canFam1.chr37 30789355 83 - 33897405 ACTCACGGTGTCATACACGGAGTAGGCAGACAGCACCTGGAACAGGGCTCGCTGCCTAGGAGGGGGGACAGCGGGGGGCTCTG--- s fr1.chrUn 6501947 81 + 349519338 ACTCACCGTGTTGTAGACCGAATATGCTGCCAGTACGTGAAACAGAGCCTGCTGCCTGG---AGAGGGAA--GAGAAACACCGGTG a score=846.0 s hg17.chr17_random 538210 3 + 2618010 GTT s panTro1.chr19_random 16293838 3 - 57627672 GTT s fr1.chrUn 6502028 3 + 349519338 GTT a score=20633.0 s hg17.chr17_random 538213 232 + 2618010 TGTTTTGTGCAGATG-TTGTTAATTTCACTTTGTCTACAAAGCCTAACAGCAAATCCCATTTCAGGTTCAGATGTTTCACCAGATAAGCAGTGAGCTCTTCAGGGCCTGAGACTCTTGAAGAAATGTTTCAGTAAAATCCACATCTGTGACATGCAAATAGCCCAGTTGTACAGTGACTTGCCTGATCCTTTTCACTctgaatgatttttttttt-----cagtttgcacacacgcca s panTro1.chr19_random 16293841 238 - 57627672 TGTTTTGTGCAGATGCTTGTTAATTTCACTTTGTCTACAAAGCCTAACAGCAAATCCCATTTCAGGTTCAGATGATTCACCAGATAAGCAGTGAGCTCTTCAGGGCCTGAGACTCTTGAAGAAATGTTTCAGTAAAATCCACATCTGTGACATGCAAATAGCCCAGTTGTACAGTGACTCGCCTGATCCTTTTCACTCTGAATGATTTTTTTTTTTTTTTCAGTTTGCACACACGCCA a score=58820.0 s hg17.chr17_random 538445 543 + 2618010 gttcagtctgtgggtgtacagttcctcca--cggttccaaac---cgatgtgcag----agtctcc-------cggccaccgctccagcccctcctggggcgactccttcatcctccaagtctccagggtggcccctatgcaaccagcctctccccgatccgtcagcccctggccacccagactgcttctcagtccctg---tggtttggccttttccagaatggcctaggaatgggaatcctactgtggtagcttattgggtctggcttctgtccctcagcaaaatgcatctaggatccacccacgttcgtgcaggcatcaccggctcgttcccttttctcactgggtc---ttccgtttgaagggaggaccagccttgctctccccatccccgtgttgaaggccgtccccgaaggctccgtgtgtgagtgacgaggagtcaagcagtgaacctggcatgctggtttcatgtggatgtcagtttgcaaatcagtgggttcaatatctgtgacactttggggatgtgtggttcaagtccatcgagctttgtgagccactgcccaa s panTro1.chr19_random 16294079 543 - 57627672 GTTCAGTCTGTGGGTGTACAGTTCCTCCA--CGGTTCCAAAC---CAATGTGCAG----AGTCTCC-------CGGCCACCGCTCCAGCCCCTCCTGGGGCGATTCCTTCATCCTCCAAGTCTCCAGGGTGGCCcctatgcacccagcctctccccgatgcgtcagcccctggccacccagactgcttctcagtccctg---tggtttggccttttccagaatggcctaggaatgggaatcctactgtggtagcttattgggtctggcttctgtccctcagcaaaatgcatctaggatccacccacgttcgtgcgggcatccctggctcgttcccttttctcactgggtc---ttccgtttgaagggaggaccagccttgctctccccattcccgtgttgaaggccgtccccgaaggctccgtgtgtgagtgacgaggagtcaagcagtgaacctggcatgcaggtttcatgtggatgtcagtttccaaatcagtgggttcaatatctgtgacacttcggggatgcgtggttcaagtccatcgagctttgtgagccactgcccaa s canFam1.chr37 30789586 493 - 33897405 GTGCACCCTG-GGGTGTCCGATGCCTCCATGCGGCTCCCGCCGTGGGGTGTGCAGCTCCGGGCTCCCCCAGCACCGCCAGCGCCCCCTCCAGCCCTGGAGCAGCACCC---CCCTACACGCCCCCTGGG------------AGCCAGCGCTCCCCCTGTCC--CGGTCCTTGCAGTCCCTGA-TGCCTCTCCTCCCCTGCCCTGGCCTGGCCCT-------GTGTCCCAGGAACACCAGCCCCA------------------TGTGGCCCCTGCCCCGAGCC--CACGCAGCCGGGG--CATCCGTGGCCCTGAGTGCACCCCCAGGCC-TTCCCAAGTGTCCCTGGGCTGGACTCTGTT----GGGGGGAC---CCCGGCCCCGCCCATCCCGGAG--------CATCTTGG--GGCTCCAGGTCTGAGCCACCGTGAGGAGAGCAGGGAAC--GTCATGCAGGTGTGACCCCGATA-CAGGCTGCGAACTCCTGGGATCACTATCTGAG-CACGG-GGGGGTATGGGGTGC-AGCCCCTTCAGCACTGCCAGGAGCCGCCCGA a score=9373.0 s hg17.chr17_random 538988 99 + 2618010 ctggctgccaacgtggctgtgccatgtcatgttcccagcggacctggatgagagtttccaggacccctaattctcccagcatttggtgctgtcactgtt s panTro1.chr19_random 16294622 99 - 57627672 ctggctgccaacgtggctgtgccatgtcatgttcccagcagacctggatgagagtttccaggacccctaattctcccagcatttggtgctgtcaCTGTT a score=5584.0 s hg17.chr17_random 539087 63 + 2618010 -GCCTGGGGGGGGCTCATGGGCCCTCTA----------------TCCTGCCACCCTCCCGTGGG------TCCTACCATGGGTCCC s panTro1.chr19_random 16294721 62 - 57627672 -GCCTGGGGGGG-CTCATGGGCCCTCTA----------------TCCTGCCACCCTCCCGTGGG------TCCTACCATGGGTCCC s danRer1.chrNA 330642098 85 - 390413307 GGCCCCAGGGTG-CCCCCTGGCCCTCCACCAAAGGGCTCTTGACCCCAGCAAGCTACCCAGGGGTACACCTCTCTCCCTGGACTTG a score=14256.0 s hg17.chr17_random 539150 181 + 2618010 ---CATGGGTCAGGGAGAGCACCCTTCACCAT----TGTGCATGATTTTGTTTGCTGCCTTCCATCTCCTCAGGA---------TCCTCCTGGGTTCTGGCCCCACATGTTCCAGTCTGGCCCAGGGCTTGGAACCAGGGAGGTGCTCGGTTCATGGTGCCGGCTGCTCCCTGGGCCGGGAGAGCTCTTGGCAGCTG s panTro1.chr19_random 16294783 181 - 57627672 ---CATGGGTCAGGGAGAGCACCTTTCACCAT----TGTGCATGATTTTGTTTGCTGCCTTCCATCTCCTCAGGA---------TCCTCCTGGGTTCTGGCCCCACATGTTCCAGTCTGGCCCAGGGCTTGGAACCAGGGAGGTGCTCGGTTCATGGTGCCGGCTGCTCCCTGGGCCGGGAGAGCTCTTGGCAGCTG s rn3.chr1 66589345 162 - 268121971 ---CGTAAGTTACAGAGAGTGCTTCTCAC-------TGTGTGTCA-TTTGTTTGCCAATATCATTCTCCTTGGCT---------GCCACCTGGGTGCTAGCCCCTCGTTTT-----------TAGGACTTGATGCCTAGGA-GTAACCAGCACAGGCTG-TGGCTATTTTCTATAAGGAAAGGCCCTTCGGCAGC-- s danRer1.chrNA 330642183 184 - 390413307 CAGTATAGGCCACAGGGTGCCCCCTTGCCCTTCAGCTAGGTGCAA------CTGACACCAGCAAGTTACCCAGGGGTCCACCTCTCTCCCTGGA--CTTGCAGTGTAGGCCCCAGGGTGTCCCATGGCCCTCCACCTTGGG-GCCCCTGACACCAGC---AAGCTACCCAGGGGTCCACCACTCTCCCTGG-ACTTG a score=3398.0 s hg17.chr17_random 539331 65 + 2618010 TGTCATC-CCT--------CCTGGGTGACCCTGG--C-TTCTGCTCCGGGG---AAGCCCCCATC---CCTCT---CATTCACCCC----- s panTro1.chr19_random 16294964 65 - 57627672 TGTCATC-CCT--------CCTGGGTGACCCTGG--C-TTCTGCTCCGGGG---AAGCCCCCATC---CCTCT---CATTCACCCC----- s rn3.chr1 66589507 64 - 268121971 -ATCACC-CCT--------CCTTCTGGACCCCTC--CATTTTGCTCAGG-------ACTCCCATC---CCTTCTGACATTCCTTTC----- s canFam1.chr37 30791169 72 - 33897405 TGTCATC-GCTCCCCCCGGCCTCAGAGACCCCGT----GTCCCCTGCACGG---AAGTCCCCGGG---CCTCC---CCTGGGCCCC----- s danRer1.chrNA 330642367 79 - 390413307 CATTATAGGCC--------CCTGGGTGCCCCCTGGCC-CTCCACTTAGGGGCCTATGACCCCAGCAAGCTACC---CATGGGTCCACCACT a score=1518.0 s hg17.chr17_random 539396 9 + 2618010 ATCTCTGCT s panTro1.chr19_random 16295029 9 - 57627672 ATCTCTGCT s rn3.chr1 66589571 8 - 268121971 A-CTTTGCT s danRer1.chrNA 330642446 9 - 390413307 CTCCCTGGT a score=303.0 s hg17.chr17_random 539396 9 + 2618010 ATCTCTGCT s danRer1.chrNA 330642446 9 - 390413307 CTCCCTGGT a score=772.0 s hg17.chr17_random 539405 22 + 2618010 GGGACCCTGTGGCTCCC-ATAGG s panTro1.chr19_random 16295038 23 - 57627672 GGGACCCTGTGGCTCCCCATAGA s canFam1.chr37 30791241 22 - 33897405 TGAACCCCACTGGCCCA-GCAGC s danRer1.chrNA 330642455 22 - 390413307 TTTGCATTATAGGCCCC-AGGGT a score=48501.0 s hg17.chr17_random 539427 108 + 2618010 CTTACTTGGTTCCGTATC----GATCCCTGAAG-AACATATGCTTCCTTAATGTCCCGCTTATGTCCCGGTCGATGCGCTGGATGTGCTCAGATG----ACCTCTTGC---CCTTCTCCT s panTro1.chr19_random 16295061 109 - 57627672 CTTACTTGGTTCCGTATC----GATCCCTGAAGGAATATATGCCTCCTTAATGTCCCGCTTATGTCCAGGTCCATCTGCTGGATGTGTTCAGATG----ACCTCTTGC---CCTTCTCCT s mm5.chr2 175317390 109 - 181686250 CTTACTTAACACCGTATC----TGTCTCTAAAC-ATAATATGGTCCCTGAATGTGCGGTTCACGTCAAGGTCTATTTGTCTGATA---TCAGGTGAACAACCCCGTGC---TCTGTGTTT s rn3.chr17 83165687 109 + 97307196 CTTACTTGACACCATATC----TGTCTCTAAAC-ATGATATGGTCCCTGAATGTGCGGTTCACGTCAAGGTCTATTTGTCTGATA---TCAGGCGAACAACCCCGTGC---TCTGTGCTT s canFam1.chr37 30791263 108 - 33897405 CTCACCTGACCCCGTAGC----GGTCCCAGAAC-ATGGTGTGACTGCGGAATGTGCGGTTGACGTCCAGGTCGATCTGCATGATGTCCCGGGAGG----AGACCAGGG---CCGCCTCCT s fr1.chrUn 6503259 108 + 349519338 CTCACTTTACTCCAAACC----GCTCCCTGAAC-ATGATGTGGTTCCTGAAGGTTCGGTTGACGTCCAAGTCTATCTGTTTTATC---TCTGTTG----AGAAGGTGCGAGCCTGCTGCT s danRer1.chrNA 330642477 111 - 390413307 GCCCCCTGGCCCTCCATCTGGGGGTCTCTGACC-CCAGCAAGCTACCCAGGGGTCCACCTCTCTCCCTGGACT-TGCAGTGGAGGCCCCAGGGTG----CCCCCTTGC---CCTCCACCT a score=3874.0 s hg17.chr17_random 539535 4 + 2618010 TCAT s panTro1.chr19_random 16295170 4 - 57627672 TCAT s mm5.chr2 175317499 4 - 181686250 TAAT s rn3.chr17 83165796 4 + 97307196 TAAT s canFam1.chr37 30791371 4 - 33897405 TCAT s fr1.chrUn 6503367 4 + 349519338 TCAT a score=1937.0 s hg17.chr17_random 539539 20 + 2618010 GATCTGTAGGGCAGGGCCAA s panTro1.chr19_random 16295174 20 - 57627672 GATCTGTAGGGCAGGGCCAA s mm5.chr2 175317503 19 - 181686250 T-TCTGAAGAAGAAAGAGAA s canFam1.chr37 30791375 20 - 33897405 TTCCTGCGGGGAGACCCCGG s fr1.chrUn 6503371 20 + 349519338 TTTCTGGAAGACAAGGAAAA a score=3223.0 s hg17.chr17_random 539559 12 + 2618010 GCGGAGGAAGCA s panTro1.chr19_random 16295194 12 - 57627672 GAGGAGGAAGCA s mm5.chr2 175317522 12 - 181686250 AGGAAGAAAACA s canFam1.chr37 30791395 12 - 33897405 GAGGAGGAGCCG a score=19448.0 s hg17.chr17_random 539571 185 + 2618010 GTCTCAGA---ACAGATGGAAGACTCCCTGCCCCCAGTGGCAGTCAGCCCACAGTCAGCACTTCGGGAAGGAAGGACAGA---------AGGAAGGTTTCCTTCTGCAGAAAGCTGCATTTTGGCTTGTTACTGAAGCCAGGGAGGGTCACCAGAGCTGAGTTTGTCTGTGGTGACTGTGTCACCATCTGTGCCCAG s panTro1.chr19_random 16295206 185 - 57627672 GTCTCAGA---ACAGATGGAAGACTCCCTGCCCCCAGTGGCAGTCAGCCCACAGTCAGCACTTCGGGAAGGAAGGACAGA---------AGGAAGGTTTCCTTCTGCAGAAAGCTGCATTTTGGCTTGTTACTGAAGCCAGGGAGGGTCACCAGAGCTGAGTTTGTCTGTGGTGACTGTGTCACCATCTGTGCCCAG s canFam1.chr37 30791407 169 - 33897405 GCGTCAGGGACACAGA---------CCCTGACCT--------GTCAG----CAGCTGCCGTCCTGGGCAGGGAGCCCAGGGGCCACCATGGGAATGTGTC---CTGCAGGAACCTCCTTC----CTTCCCCTGGGAGGCTGGGGACGGCGGGAGTGCCCACCGTGCCGGCGGGGCCTGCGTGAGGGCCTGTGCCCAG a score=10267.0 s hg17.chr17_random 539756 113 + 2618010 GGTGTTCATCTGACCTTCACCCCCAGCTCCCCAGGGTGGTCTTGACGTTCCCTCCAGCTGGAGACCTGGGCCCC-GACACGGCCTGTCCTGTTTGTTGTGCTCTGGCTGAGCGT s panTro1.chr19_random 16295391 114 - 57627672 GGTGTTCATCTGACCTTCACCCCCAGCTCCCCAGGGTGGTCTTGACGTTCCCTCCAGCTGGAGACCTGGGCCCCTGACACGGCCTGTCCTGTTTGTTGTCCTCTGGCTGAGCGT a score=54942.0 s hg17.chr17_random 539869 540 + 2618010 ACCTGGTATCTTCCGGGGTTTTTCAACTTCATTTCCTCAATGTTCAGGAGGACTGACCACATCGGGCCCCGGATGTTCATGGGCATTCCCTTGTACGCTCGAT-CTATG------AGCTGTGGGCAGAAAA--CGATCTGGTGTCACAGGCCACGGGGTGACCCCAGTGAGGACCA--GAGCCCGGGGATTCTGGAAATTGTCGGTTTTGGCCCCATGATTCCTCAGTAGAGGTGAGATCAAGCTGGGACAGGGTCTCCCTTCCCAGGACTGAAAGAGTGGATGGACACTCAGAGTCGAAACTCTGATCTGAACCTTTTCCTTCCTTCAGGTCCCCAGGGCATCCCTAGCCTTGAGCTCCGGGTAGTCCCAGCCCTAGATTCAGATTCCCTCCCTGCAAGGTGACGCTTGCACGAATAGGCAGGAAATCTGGCGACCAGGCCTGCAGTCCTCTGGGCGAGGACAGTGTGCCGCCCACCCTCTGAGAGGCTGATGGTGCCAGGCCACAG---CCATGGGTGCCTGTCCCCTGTCTCTGCAGAGAGTGCTTCCTCC s panTro1.chr19_random 16295505 540 - 57627672 ACCTGGTATCTTCCGGGGTTTTTCAACTTCATTTCCTCAATGTTCAGGAGGACTGACCACATCGGGCCCCGGATGTTCATGGGAATTCCCTGGTACGCTCGAT-CTATG------AGCTGTGGGCAGAAAA--CAATCTGGTGTCACAGGCCACGGGGTGACCCCAGTGAGGACCA--GAGCCCGGGGATTCTGGAAATTGTCGGTTTTGGCCCCATGATTCCTCAGTAGAGGTGAGATCAAGCTGGGACAGGGTCTCCCTTCCCAGGACTGAAAGAGTGGATGGACACTCAGAGTTGAAACTCTGATCTGAACCTTTTCCTTCCTTCAGGTCACCAGGGCATCCCTAGCCTTGAGCTCCGGGTGGTCCCAGCCCTAGATTCAGATTCCCTCCCAGCAAGGTGACGCTTGCACAAATAGGCAGGAAATCTGGCGACCAGGCCTGCAGTCCTCTGGGCGAGGACAGTGTGCCACCCACCCTCTGAGAGGCTGACGGTGCCAGGCCACAG---CCATGGGTGCCTGTCCCCTGTCTCTGCAGAGAGTGCTTCCTCC s canFam1.chr37 30791713 439 - 33897405 ACCTGGTATTTCCCGGCATTCCCGGCCTTAACCTGGTCGACGTTCAGCAATCGCAGCCACACCTGTCCCCGCAC-CTGGGGCGGACCCCCTTGTAGACCCGGCGCGGTGCGCCGCAGCTGCAGGGAGGAAGGCAGGGCTGGTGAGAGGGGCC-CAGGGCGGCCCC-TTGGAGCCCAGTGAGCGCGAGGCATCTAGAAGGTTCCGGCTTCAGCTCCAGGGTGTCTGCGGAGAGGCTGGGTCTCCCTGGAGCTGGGCCCCGTCCCCCACG-----AGGAGCAG-----------GGACCGTAGCCCCGACCTGACGCT----CCCCCACCACCGTCCCGGGGCCTGGGGAGGCTCGGGCTCCCAG------------------CAGACTCTCCCCAGGCAGGGGGCTCCCCTGAGGACGGGGCAGGAGGAC-------------------ACTGAGGGCG----------GCCCCCCAGCCCC---------------GTCAGGACGGAGAGCCCTTGGGGGCA------------------------------CC a score=1489.0 s hg17.chr17_random 540409 7 + 2618010 CTCCACA s panTro1.chr19_random 16296045 7 - 57627672 CTCCACA s canFam1.chr37 30792152 7 - 33897405 CAGCGCC s fr1.chrUn 6503834 7 + 349519338 CTTCACA a score=0.0 s hg17.chr17_random 540416 3 + 2618010 CGT a score=-560.0 s hg17.chr17_random 540416 3 + 2618010 CGT s panTro1.chr19_random 16296052 3 - 57627672 CAT s canFam1.chr37 30792159 1 - 33897405 C-- a score=29914.0 s hg17.chr17_random 540419 86 + 2618010 TACCTTTCTGCTGCTTTTGTATTTCTCCCAGTCTCCCAGCATATCCACCCACTTGCTCTTTCGGCTGATCTCCCGCCGAATTTGCT s panTro1.chr19_random 16296055 86 - 57627672 TACCTTCCTGCTGTTTTTGTAGGTGTCCCACTCTCCCAGCATTTTCACCCACTTGCTCTTTCGGCTGATCTCCCGCCGAATTTGCT s mm5.chr2 175329395 86 - 181686250 TACCTTCTCGGTGTTCTTGTATCTCTCCCATTTTTTCAGCATTTTCAGCCACTTGGAAGTCCTTTCGATTTCCAGTTGCTTTTGCT s canFam1.chr37 30792160 86 - 33897405 CACCTTCTCGCTGGGGAGGTAGTGGTCCCATCGCTTGAGCATTTTTATACATTTGTCCACGCGCCGGGTCTCCTGGTGGAGTTTCT s fr1.chrUn 6503841 86 + 349519338 TACCTTTTCACTGTTCCTGTACTTGTCCCAGTTCTTCACCATCTTGAGCCATTTCTCCACTCGCTTCAAGTCCTGCTGCTTTTGCT a score=-2404.0 s hg17.chr17_random 540505 43 + 2618010 ------GTCAAATGAGGCATGTTGGAGTT----------AGCGGA----------GCTGCCAGGCTTCC s panTro1.chr19_random 16296141 43 - 57627672 ------GTCAAATGAGGCATGTTGGAGTT----------AGCGGA----------GCTGCCAGGCTTCC s canFam1.chr37 30792246 34 - 33897405 --------GGAAGAGGACAAGCGGGGGC-------------CGCA----------GGTG--AGGCTC-- s fr1.chrUn 6503927 69 + 349519338 GAGAAGGAAGAGAGAGACGTTCAGATGTTTCCCAGCATGAGCGAAATATAGACCGGCTTAGAATCTTCA a score=34754.0 s hg17.chr17_random 540548 434 + 2618010 CAGAGCCGCCCGCGGATGCTGGGTCTTGGGCTCTGGAG-CCCTGGTGGGAGCCAGCTGGAAGGAGCCAGGGAAGGGCAGACCTCAAGGGCTGAGAGCCTTTGAGCAAATGAGCACCAGTGGGCTGGCTTTGGGACCCCGGGATGTACCATCCTCAGGCCACAGACACACCAGTCTTAGGTCCCAGCCTCTAGGTGGGGTCCTGACACAAGCGCGCAGCCACCCCCAAGCCAGGACTGTGGTTCTCCTTTTGGAATTTTATCAAACTGCCAAAGTGAACAGCAA---CCTGGGGTCAGGTCCAGCAGGGACTGCTGCCCCTCCCAGTGACAGCGTGTTGCCCTCACCCGCCACCGCTCAGGCCAGCTGCTTCCTCTGCCTCACTGACCACCCGCCCAGTCCCTACGTCCCTGGACCAGCCCCTCCACGCATCAGGCTCT s panTro1.chr19_random 16296184 434 - 57627672 CAGAGCCGCCCGCGGATGCTGGGTCTTGGGCTCTGGAG-CCCTGGTGGGAGCCAGCTGGAAGGAGCCAGGGAAGGGCAGACCTCAAGGGCTGAGAGCCTTTGAGCAAATGAGCACCAGTGGGCTGGCTTTGGGACCCCGGGATGTACCATCCTCAGGCCACAGCCACACAAGTCTTAGGTCCCAGCCTCTAGGTGGGGTCCTGACACAAGGGCGCAGCCACCCCCAAGCCAGGACTGTGGTTCTCCTTTTGGAATTTTATCAAACTGCCAAAGTGAACAGCAA---CCTGGGGTCAGGTCCAGCAGGGACTGCTGCCCCTCCCAGTGACAGCGCGTTGCCCTCACCCGCCACCGCTCAGGCCAGCTGCTTCCTCTGCCTCACTGACCACCTGCCCAGTCCCTACGTCCCTGGACCAGCCCCTCCATGCATCAGGCTCT s canFam1.chr37 30792280 232 - 33897405 -----CAGCCCG-GGAGGTGGGCGCTCGGCCCGTCCAGTCCCCCGCAGGACCC-----GGAGGAGCCAGGAAGGCACA-----------------------------------------------------GGGCCCC------------CCGCGGACCGC----------------GGCTCCGGGTCTGGGGTGCGTTCCCGGCA-GCCCGTGCAGC---------GCTGGGACGGGGG-----------------------ACTGGGGAGATGCCCGGGGATGTCCTGGGG---GATGGGGTACAGACAGCTGGCCC---------CAGC------CCCCCACACGT---------------------------------------CCTGCCCGG-------GGCCCAGGA-----------------CGGGCTCT a score=14377.0 s hg17.chr17_random 540982 73 + 2618010 TACCTTCGCCTCCCGCGCAGTCAGAGGAGGCAGCTCCGTCTCACTGTAAGGCAACCCAGGCAGAGCTGAGGAA s panTro1.chr19_random 16296618 73 - 57627672 TACCTTCGCCTCCCGCGCAGTCAGAGGAGGCAGTTCCGTCTCACTGTAAGGCAACCCAGGCAGAGCTGAGGAA s canFam1.chr37 30792512 66 - 33897405 CACCTTGGCCTCTTGGGGGCTGGAGCCGGGCAGCTCCTTGTCCCTGGAAGGCAAGAGACGCAGAGC------- s fr1.chrUn 6503996 62 + 349519338 TACCTTCTCCTCCAGTGCGCTGGGAGTTGGCAGCTCTTCCTCGCTG-----------GGGCAGAAAAGAAGAA a score=146900.0 s hg17.chr17_random 541055 1478 + 2618010 CTGCACGGGGCCTGGAGCGGCCCCAGCCTGGGTGCCGACCCCCAGAAAGGACTGGCTCTGTCCCTTTCCAGCTCAGGGCTCAGCCCAGGAGAAGGCACAGGGAAGGGAGGACAAGGGCCTTCCTGTGGGGCTGACTCCCAGGAGGGGCAGGACCTGGGAGAAGA---AGGAGTGTAGGGACAGCCTGGCCGGGGTTACTGGGGCCCCTGGCGTGGGGGGCGGTCAGGCTGCCCAATGGGGCTGCCCGTCCTGGACTCGAGGTGGTGCTTTCTGCTGGAGCTGAGAAAGGT------TAGCCCTGAGATGGGATGGGGGCCGCCCAGGGTGGGCGACCGGGCCCTGACAGGAGTCCCTCAGGGAGTGACCACATCCCCCCGCCAGGGTCAAGGGAGCCTGCCCTGAGACCTGCCCGGTGTACTCTGGCTGCACCAGGGGCCCACCCCACTTGACAGCCCCAAGGCCCTTGCAGGTTCTGACCTCCCAGCATCCA-CCTGCCTCTCCCTGCACCCGAGCCACACACCCTGCGTTTCAGAAGTGGCACCGCTCGTCAGCT-----CCCTCCCGCCCT----------ACCTCC---CCAG--GGATCCTCTG----------TCTCT---CCATCCTGTGATCC------CTGAGGGATGGGCT--------CCTGGCTGGGCTCCTCTTACCTGGCCCCAGATCCCTT-----------CCCAGCA---CCAGACCCA-GGTCTTTAGCCGCGAGCCCTGCTGCCTCCCTGGCCTCACCGTGAGATGCCCAGAACGGGGCCCTGCCCATCTTCTCCCCCGTTCTCCTAGGGCTACAGCCCCCATTGTCACCATGCCTTTTCCCCTCA-----------------------------------------------CGGGACAGTGAGGGCTGTAGCTCTAGGGGAATGGGGGAGAAC--------AGGGGCAGG--TGGGCCCTCAGAGACCTGCTGGACAACAG----CCCTGAGGCTGGGCCAGGCGTCCCCTCACCCTGTGGCCATAACCCTTGCATCTCACCGGGGTTGTCTCCAAGTAGACA---GGGCCAGACC--CTCAGGCTGCCCCGCTCCTCTTGTGCTCACTTGCCGACAGAACTGCTGAGCGCCCAGGGGCCTGACCTAGCCCAGTCTCCATTCCCACCGGCTCCC-TAGATGGGCCCC--ACACCTCTGGCCT---AACAACCTCGGGCTGGACCTGCAGGGGAGTCAGGGAGGAGTTCTGTCCCTGGAAAGGAGGTTGACCCGACCTGGTGAGACATGTCCTGCGTCAGAAAGGCCTTTCTAAAAGCAAACCCATCCCTGAGCTGAGACAGGTGCTTTAGGGGTGAGGGGAGTGCAGAGGACTCACTGTACAATCCCCAAATGATCGACGTTGTTGTTGTAGCTTCGAAAAGGCTTAGGCCCCTTGTCCTCTGGCAGCCCAGCTCGGTGTCCCTGTAGCCCAGAGGGAGCCTTGGTGAGGGGTC-------CAAGGTAAAGGGTGCAAGGGCCTGGGGGCATTGGCCACCCGTCCCTGCCCTGTGCTCCTAGGGAGCCCAGGACCCTTTGA-----CCAGGGCACACTGGAAGAGGCCTCCCT s panTro1.chr19_random 16296691 1486 - 57627672 CTGCACGGGGCCTGGAGCGGCCCCAGCCTGGGTGCCGACCCCCAGAAAGGACTGGCTCTGTCCCTTTCCAGCTCAGGGCTCAGTCCAGGAGAAGGCACAGGGAAGGGAGGACAAGGGCCTTCCTGTGGGGCTGACTCCCAGGAGGGGCAGGACCTGGGAGAAGAAGGAGGAGTGTAGGGACAGCCTGGCCGGGGTTACTGGGGCCCCTGGCGTGGGGGGCGGACAGGCTGCCCAATGGGGCTGCCCGTCCTGGACTCGAGGTGGTGCTTTCTGCTGGAGCTGAGAAAGGT------TAGCCCTGAGATGGGATGGGGGCCGCCCAGGGTGGGCGACCGGGCCCTGACAGGAGTCCCTCAGGGAGTGACCACATCACCCCGCCAGGGTCAAGGGAGCCTGCCCTGAGACCTGCCCGGTGTACTCTGGGTGCACCAGGGGCCCATCCCACTTGACAGCCCCAAGGCCCTTGCAGGTTCTGACCTCCCAGCATCTA-CCTGCCTCTCCCTGCACCCTAGCCACACACCCTGCGTTTCAGAAGTGGCACGGCTCATCAGCT-----CCCTCCCACCCT----------ACCTCC---CCAG--GGATCCTCTG----------TCTCT---CCATCCTGTGATCC------CTGAGGGCTGGGCT--------CCTGGCTGGGCTCCTCTTACCCGGCCCCAGATCCCTT-----------CCCAGCA---CCAGACCCAGGGTCTTTAGCCACAAGCCCTGCTGCCTCCCTGGCCTCACCGTGAGATGCCCAGAACGGGGCCCTGCCCATCTTCTCCCCCATTCTCCTAGGGCTACAGCCCCCATTGTCACCATGCCTTTTCCCCTCA-----------------------------------------------CGGGACAGTGAGGGCTGTAGCTCTAGGGGAATGGGGGAGAAC--------AGGGGCAGG--TGGGCCCTCAGAGACCTGCTGGACAACAG----CCCTGAGGCTGGGCCAGGCATCCCCTCACCCTGTGGCCATAACCCTTGGATCTCACCGGGGTTGTCTCCAAGTAGACA---GGGCCAGACC--CTCAGGCTGCCCCGCTCCTCTTGTGCTCACTTGCCGACAGAACTGCTGAGCGCCCAGGGGCCTGACCTAGCCCAGTCTCCATTCCCACCGGCTCCCATAGATGGGCCCC--ACACCTCTGGCCTAACAACAACCTCGGGCTGGACCTGCAGGGGAGTCAGGGAGGGGTTCTGTCCCTGGAAAGGAGGTTGACCCGACCTGGTGAGACATGTCCTGCATCAGAAAGGCCTTTCTAAAAGCAAACCCATCCCTGAGCTGAGACAGGTGCTTTAGGGGTGAGGGGAGTGCAGAGGACTCACTGTACAATCCCCAAATGATCGACGTTGCTGTTGTAGCTTCGAAAAGTCTTAGGCCCCTTGTCCTCTGACAGCCCAGCTTGGTGTCCCTGTAGCCCAGAGGGAGCCTTGGTGAGGGGTC-------CAAGGTAAAGGGTGCAAGGGCCTGGGGGCATTGGCCACCCGTCCCTGCCCTGTGCTTCTAGCGAGCCCAGGACCCTTTGA-----CCAGGGCACACTGGAAGAGCCCTCCCT s canFam1.chr37 30792578 1326 - 33897405 ---CCTGAGGCCC----CGGCCCCA----------TAGCCACCA-----------------------CCACCCCCCGTCTGCACCCAGG----GGCCTGGGGAGGGCAGGGC--------TCCT-------------CAAGGGAGGGCAGGGGCTGCCAG--------------------CGGCCT----------------------------GAGGGCGGGCAGG--------------------------------GGCGGCG---TCTGGGGGGTCTGAGAAGGGTGTTTGCTGGTGGTGGGCTGGG-CGGGGACCCCTCGGCG-------------------------CCCCCAGGGGGTGACC-TGTC-CCCCTCCTGGAT-----GGACCAGCCC-GAGAGCTG-TCAGTGTGGCTTGGGTGCCCCATGA--CCGTCCCGCT--GAGGTCCCTCCGCCTCCCCAGAGCCTGACTGCCCAGCGTCCAGCCGGCTTCCCCCTGCCCCCTGG-CATTCCCCCTGCTGTCC---CCTGACTCCCTTCTCTGGCTGTCCCCTCTGCCACCCTGGCCCATTTCACCTCCTGTCCTGTTGGAGCCCCTGAGCACGACCACCCCTGAGCCATCCCAGCAGCCACTGGGCCGTGAGCAGGGCTGAGGGAGCCCCACCTGGGGT-CTCCAGCCTCCATCAAGTTCCCGTGGGGCTGTTGACCCAGCATCCTCGTCCCCTGCGACCTAGGCCACTGG-GCTGTCCCCTCCCTCGTTCC---------CGCCCAGGGCAGCCCCCTCCTCCTCTTCCCTCCTCCTGTCCAAGCTGGTCGGGCCCTCCTTCTgcggcgcccccccccccccgcccTGGCCTGGTCCCCGGCATCTAGCTGCAGCCCCGCAGAAGCCTTCGGGACTGTGGGGGCCCTGGCT-GGGGGGTGTGGGTGAGAACCCCCTATGGAGAGCACGCCCCGGCCCC---AGAGCTCCTCAACCACGGGATCCCCTGCTGAAGGGACTGGAcccccccccccccgcgccc------------cccccccgATGCAGG----AGGCAGACACCTGGGCCTGCCCAAAACAGGCGTGGGGGCCCCTCCT-----------------------CTGAGTGTCCAGGGGCCTCCCCTGGGCCCAGCTCCCTTCCTGCCCACGTCC-CGGGTCGGCCTCCGGGGTCTCTCAGCTGCAGCCCAGCGCAGACATGGCCCTCAGAGG-----------------GCTCCAGGGGATGAGGT---CCCAACCTGGGGGG--GGGTCAGCCTCCAGAGAAGTGTTCCTGCAAATGCCACCCTCCCTGAG----------------ATGGATGAGGGGTGTCCAGGGGACTCACTGCAGAAAGCCCTGGTGGTTG-----------GTGACCTTCCACAGTAACAG-------GTCCTGAGGAGACCCTGCTTGGTGTGCCTGCAACAGAGAGGGCTCCGTGGTGGGGACCCATCAGAGCAGGGAAATGGGGACAGGA----GGGAGCAGAAG-GGCTCCTCCCTCCCCTGAATCCTGAGGGAGCGCC-GACCCTCTGAGATTGGCCGGGCACCAGAGGAAGGGCCTGTCT a score=82700.0 s hg17.chr17_random 542533 900 + 2618010 CCAAGAAGCAGACCGACTTGTACCTTTTCGTATTTCATAATGATGTCCTCTCGCTCTTGTGCCCACCAACTGCCCGCGACCTCTACCACGTCCATCCTGTGAGACAGAATTGTCTAAAGGTCACACTGTAC-GCGGCGGCTTCGGAG-AACACCTGAACCGCTCTCGCCGGGCTCCCAGATGCTGGCTGGCTGCGTAACCCCCATTCCACCGCCGCCCCC-AGGGAAAAAGGGGCCAGACCCAGTGGCCCACAGCTGCTCCAGTCTCTGGAGTCTCAAGTCCCAAGCAGGGGTGGGCATCTTCCCAAGGACTTGAGTACAGTGGGACCTAGACAGAGAATCCTGTTGTCCCCCAATGCCATGAAATGGGGACACACCGGCCCCAGCAGGTTGAATGGTTTCCACCTGCCAAGGGTGAAGGGCCCATGATGGGCTATTCCAGGGATGTGGAGGCAGACTGGGGTCAGCGACCAGAGGTCTCTGTGCAATCGGCCTCCTGGGATGCTCAGGGCCTCAGCGATGCCCAGTTTCCTACAGGGAACAAGATCTCTCCCGACTGCTCGGTTCTACTCCGCTCATCACTTTGGCTACCGTGGCTCTTCAGTCTGAACAGTGAAGCCACTTTAGGAATAACGCCTGTTGAGCAGGAGGGTGTTGGGTTTGGGGGATGAGGAAGATCTATTGTACGCATGGAAACCACGTCTCTCGCGGAGGGACTGTGGAGTCCACCATTCTGAGCCGTCCCAACAGGAGGAGGCTTCATTTTCCTGGGTCACTGAGGAAGAACAGTGGGTCCTTGGTCCTGGAGAACAGCTGGATGGACCGTCCCTCCTGGGAATACTCGAGGCAAAAGGAGGGCGAGGCCTCAAGAGGACCACGCAGAGCAAGAAATACCTGGGGAGAA s panTro1.chr19_random 16298177 903 - 57627672 CCAAGAAGCAGACTGACTTGTACCTTTTTGTATTTCATAATGATGTCCTCTCGCTCTTGTGCCCACCAGCTACCCGCGACCTCTACCACGTCCATCCTGTGAGACAAAATTGTCTAAAGGTTACACTGTACTGCGGCGGCTTCGGAGTAACACCTGAACCGCTCTCGTCGGGCTCCCAGATGCTGGCTGGCTGCGTAACCCCCATTCCACCGCCGCCCCCGAGGTAAAAAGGGGCCAGACCCAGTGGCCCACAGCCGCTCGAGTCTCTGGAGTCTCAAGTCCCAAGCAGGGGTGGGCATCTTCCCAAGGACTTGAGTACAGTGGGACCTAGACAGAGAATCCTGTTGTCCCCCAATGCCATGAAATGGGGACACACCGGCCCCAGCAGGTTGAATGGTTTCCACCTGCCAAGGGTGAAGGGCCCATGATGGGCTATTCCAGGGATGTGGAGGCAGACTGGGGTCAGCGACCAGAGGTCTCTGTGCAATCGGCCTCCTGGGATGCTCAGGGCCTCAGAGATGCCCAGTTTCCTACAGGGAACAAGATCTCTCCTGACTGCTCGGTTCTACTCCGCTCATCACTTTGGCTACCGTGGCTCTTCAGTCTGAACAGTGAAGCCACTTTAGGAATAACGCCTGTTGAGCAGGAGGGTGTTGGGTTTGGGGGATGAGAAAGATCTATTGTACGCATGGAAACCACGTCTCTCGCGGAGGGACTGTGGAGTCCACCATTCTGAGCCGTCCCAGCAGGAGGAGGCTTCATTTTCCTGGGTCACTGAGGAAGAACAGTGGGTCCTTGGTCCTGGAGAACACCTGGATGGACCGTCCCTCCTGGGAATACTCGAGGCAAAAGGAGGGCGAGGCCTCAAGAGGACCACACAGAGCAAGAAATGCCTGGGGAGAA a score=22866.0 s hg17.chr17_random 543433 247 + 2618010 CCCTAGTGCCCGGACCCCTTTGAACACAAGGGAAGATAGTCTCCCCTCAGCCAGCCCTCCAGGGCTCCTTCATTTTCC-----------ACAGCTGCCCAAGGG-----------------------------------CAGCAGGCTCCCCCGGACAAGGGACCATGTGTGTTCA------------GTGGGGCCCACAGCGACCATCAGGAC-CCAGCTTAGGG----------CACAGAGGTGTTCTGAGGACCGT--------------CAGTGGATCTGTACCAGTGGCTCTA---TACCAGTGGCTCTGCCAGGACCAGG----CTCTGCC s panTro1.chr19_random 16299080 261 - 57627672 CCCTAGTGCCCGGACCCCTTTGAACAGAAGGGAAGATAGTCTCCCCTCAGCCAGCCCTCCAGGGCTCCTTCATTTTCC-----------ACAGCTGCCCAAGGG-----------------------------------CAGCAGGCTCCCCCGGACAAGGGACCATGTGTGTTCA------------GTGGGGCCCACAGCGACCATCGGGAC-CCAGCTTAGGG----------CACAGAGGTGTTCTGAGGACCGTCAGTGGATCTATACCAGTGGATCTATACCAGTGGATCTA---TACCAGTGGCTCTGCCAGGACCAGG----CTCTGCC s danRer1.chrNA 235931613 316 + 390413307 CCCTAGGGT----GCCCCCTGGCACTTCACCTAGGGGCCTCTCACCTCAGCAAGCTACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTAGAGGCACTAGGGTGCCCCCTGGCCCTTCACCTAGGGGCCTATGACCCCAGCAAGCTACC-----CAGGGGTCCACCTCTCTCCATAGACTTGCGGTATAGGCCCCAGGGTGCCCCCTTGGCCTCCACCTTATGGCCTCTGACCCCAGCAAGCTACCCTGGGGTCCAC--------CTCTCTCCCTAGACTTGCAGTAGAGGCCCTAGGGTGCCCCTGGCCCTCC----ACCAAGGGGCCTCTGAC a score=26140.0 s hg17.chr17_random 543680 274 + 2618010 CCATCGGGATGGGAAACCTGGGcagatttgggatctagggcagggaggtcacagggttcaggcctgaattccagcacagcacacggcagggctgagagcaaaactcagggtcatgtccggattcccaggccggttactgcctctctgaccccagacgtctcatctgtcgaatggggacatttgggaacagcacccactctacgaagccaccatggagacgaaagagccaatcgtctacacgggcagtgtagaacgggcgcctggtgagtgctca s panTro1.chr19_random 16299341 274 - 57627672 CCATCGGGATCGGAAACCTGGGCAGATTTGGGATCTAGGGCAGGGAGGTCACAGGGTTCAGGCCTGAATTCCAGCACAGCACACGGCAGGGCTGAGAGCAAAACTCAGGGTCATGTCCGGATTCCCAGGCCGGTTACTGCCTCTCTGACCCCAGACGTCTCATCTGTCGAATGGGGACATTTGGGAACAGCACCCACTCTACGAAGCCACCATGGAGACGAAAGAGCCAATCGTCTACACGGGCAGTGTAGAACGGGCGCCTGGTGAGTGCTCA a score=22300.0 s hg17.chr17_random 543954 218 + 2618010 GGGATGACCCTCCTC-----------GGTAGCTGCCCCACAGAGGCCAACACCGCCCGCACC--GTAGCCACTGCCCCCA--AGTCCGCCTGGAGGGAAGAGAGCAGGTCACGCTCACCTGATTCT---GA--TGAATCAGCTGGCCTGGG-----TCATGCCTCTCAGGGAGAAAACCTTTGAGTCCACAGAGCTGCTCACAGATACCACTGCCTGTGTGTAACTGCTGTAGACCACTGAGG s panTro1.chr19_random 16299615 218 - 57627672 GGGATGACCCTCCTC-----------GGTAGCTGCCCCACAGAGGCCAACACCGCCCGCACC--GTAGCCACTGTCCCCA--AGTCCGCCTGGAGGGAAGAGAGCAGGTCACGCTCACCTGATTCT---GA--TGAATCAGCTGGCCTGGG-----TCATGCCTCTCAGGGAGAAAACCTTTGAGTCCACAGAGCTGCTCACAGATACCACTGCCTGTGTGTAACTGCTGTAGAACACTGAGG s danRer1.chrNA 235931946 225 + 390413307 GGGTTCACCTCTCTCCCTGGACTTGGAGTAGAGGCCCCAGGGTGCCTCATGGC-CCTACACCTAGGGGCCTCTGACCCCAGTAAGCTACTTGGGG-----------------GTCCACCTCTTTCCCTGGACTTGCAGTAGAGGCCCCAGGGTGCCTCATGGCCCTCCACCTAGAGGCCTCTGATCCCAGTAAGCTACCTGGAGGTCCACCTCTCTCCCTGGACTTGCAGTAGAGGCCTCAGG a score=10439.0 s hg17.chr17_random 544172 119 + 2618010 CAGACCAGAGAGCAGATAGGTGCTAAGCACCAGTGACATTCTGAGGTCATGGCACGAATCACAGTGGGGCCTTGCCCGGGTCAGCAGCACCCAGAGTCAGGGTCCTCCGCTGCCTGAGG s panTro1.chr19_random 16299833 119 - 57627672 CAGGCCAGAGCGCGGATAGGTGTTAAGCACCAGTGACATTCTGAGGTCATGGCACGCATCACAGTGGGGCCTTGCCCGGGTCAGCAGCGCCCAGAGTCAGGGTCCTCCACTGCCTGAGG a score=814.0 s hg17.chr17_random 544291 7 + 2618010 TGTCAAC s panTro1.chr19_random 16299952 7 - 57627672 CGTCAAC s rn3.chr7 91683383 7 - 143082968 TGTCTGT a score=17003.0 s hg17.chr17_random 544298 59 + 2618010 ATGCCTGCCTGCAATGTGTT-TGTGCACGTGCGTGCACATGTGTATGTGGGTAAACACAT s panTro1.chr19_random 16299959 59 - 57627672 ATGCCTGCCTGCAATGTGTT-TGTGCACGTGCGTGCACACGTGTATGTGGCTAAACACGT s mm5.chr10 91060263 59 + 130633972 ATGTCTGCTTATAATGTCTT-TGTGTGTGTGCGCACACACTTGTGTGTGGGCACACATAT s rn3.chr7 91683390 59 - 143082968 ATGCCTATGTGT-GTGCATTGTGTGCATGAGTGTACACATGCATATGTAAGTGCACACAT a score=2858.0 s hg17.chr17_random 544357 15 + 2618010 CTGTGCACGTGTGTG s panTro1.chr19_random 16300018 15 - 57627672 CTGTGCACGTGTGTG s rn3.chr7 91683449 15 - 143082968 CTGTATACCTGCATG a score=66805.0 s hg17.chr17_random 544372 739 + 2618010 CTGCTTCTCTGGCCAGGCCCGGCTGCCCCACTCATGTGTGCACCCAGTTCCTCATCACTGTCACCCCCGAGGCCCAGGGCCAGCATCAGAGCATCCATGGCTGCTCCCTAACCTCAGCCCTCCCTGCCCAGGGTGGTCCTGGGATACACATAGCGGTGGAGGGAAGTGA---CTGCTGCTGTTGGATCTCAGAATACAAAAGCTAGTACTATTACCTAATGGTCTTTTTAGTGTCTCTAATGGTATCGCTTTTTCATTTCTGATATTTTAACTGGGTATTTCTCTCCATGACCCTTGGATATTCTAGCTAGAGGATCCTGTGGGGAAAGTGCCGGGCACACAGTAGGGGCTCACTCTTCTAGACATGTTATCTAAAACCTGGTTCATCTGTCCTTCCACACAGGGCCTAGGGGATGCCAAATTCCAGGGGCCAGAAAGAGCTTGGGATAAAAAGAAACTTCAAGGGGACGGCTTTGACCTGGGCT---------------GAGTCTGCCTGTGCCATCCAACTGGAGTCTCAAGTCCTGAGGCAGGACGTCCAGATGCCCCAGTGCAGGGTCCTCCTGATCAACACCTGCTCCCCTGTACTCATTAGCAACCTCACCCACCCTACTCTCAAAGCAcacttggctctcgtatccaggagctctgcatctgtagattcagcaacagcagatggaaaatattcagaaaataaattggacggttatgtttctattgaacatgtgcagagtttgttcttgtc s panTro1.chr19_random 16300033 757 - 57627672 TTGCTTCTCTGGCCAGGCCCGGCTGCCCCACTCATGTGTGCACCCAGTTCCTCATCACTGTCACCCCCGAGGCCCAGGGCCAGCATCAGAGCATCCATGGCTGCTCCCTAACCTCAGCCCTCCCTGCCCGGGGTGGTCCTGGGATACATATAGGGGTGGAGGGAAGTGACTGCTGCTGCTGCTGGATCTCAGAATACAAAAGCTAATACTATTACCTAATGGTCTTTTTAGTGTCTCTAATGGTATCGCTTTTTCACTTCTGATATTTTAACTGGGTATTTCTCTCCATGACCCTTGGATATTCTAGCTAGAGGATCCTGTGAGGAAAGTGCCGGGCACACAGTAGGGGCTCACTCTTCTAGACATGTTATCTAAAACCTGGTTCATCTGTCCTTCCACGCAGGGCCTAGGGGATGCCAAATTCCAGGGTCCAGAAAGAGCTTGGGATAAAATGAAACTTCAAGGGGACGGCTTTGACCTGGGCTGAGTCTGCCTGTGCCGAGTCTGCCTGTGCCATCCAACTGGAGTCTCAAGTCCTGAGGCAGGACGTCCAGATGCCCCAGTGCAGGGTCCTCCTGATCAACACCTGCTCCCCTGTACTCATTAGCAACCTCACCCACCCTATTCTCAAAGCACACGTggctctcatatccaggagctctgcatctgtagattcagcaacagcagatggaaaatattcagaaaataaattggacggttatatttctattgaacatgtgcagactttgttcttgtc a score=6976.0 s hg17.chr17_random 545309 89 + 2618010 aggctggt-ctcaaactcctgacctcgtgattcgcccgtctcagcctcccaaagtgctgagattacagacgtcagccaccacgcctggcc s panTro1.chr19 62202630 90 + 82489036 aggctggtgctcaaagtcttggattcgtgattcgcccgtctcagcctcccaaagtgctgagattacagacgtgagccaccacgcccggcC a score=18490.0 s hg17.chr17_random 545398 115 + 2618010 TCTTGTGCATTTTTCAATTTAGTCATAACCTTGCTTA-----AAACAAAACTTGTTTTGTT---TTAAACAAAACTTCAAATTCATTTCCAGA-----CATTTGAATGTTCTAAATCTAAAATAACAA s panTro1.chr19 62202720 116 + 82489036 TCTTGTGCATTTTTCAATTTAGTCATAACCTTGCTTATATGCA-------TTTATTTTGTTGTTTTAAACAAAACTTCAAATTCATTTCCAGA-----CATTTGAATGTTCTAAATCTAAAATAACAA s canFam1.chr9 37102514 116 - 53642819 CCTTGCCTATTTTTCAATTTGGTTGTAAACTTGATTTTATATA------------CTTGTTGCATTAAACAGAACCTCAAATTCATTTTCAGATCATTCATTTGAATGGCCTAAATTTAAAATAAAAA a score=29236.0 s hg17.chr17_random 545513 171 + 2618010 AAACACAGATGCCCTAAATCACAAAGAAATGCTTCCTG---------AGGCAGGtaagtgtagcaagccatgtggaagctgtgcacaaccccttaaaagaaggaggtggtagccatttcttggagccaaagaattatcgctatggtgactggcaggtttagtgctgacagatcttccaat s panTro1.chr19 62202836 171 + 82489036 AAACACAGATGCCCTAAATCACAAAGAAATGTTTCCTG---------aggcaggtaagtgtagcaagccatgtggaagctgtgcacaaccccttaaaagaaggagatggtagccatttcttggagccaaagaattatcgctatggtgactggcaggtttagtgctgacagatcttccaat s canFam1.chr9 37102870 171 - 53642819 AAGTACAGATGTCCTAAATCACAAACAAATGTCTACAGAAGACAGCCAAGCGGGTGAGTAGAGTAGGCCAGGTGAAGGCTACGCA--------TAATGGAAGGGGGCGGTAACCACTGCGTGGAGCCAACCCATTATTGCTATACTTAAAAGCTGACTTAGTATGGACAG-TCTTCCAAT a score=28656.0 s hg17.chr17_random 545684 323 + 2618010 tttttttttttttttttgagacggagttttgctcttgttgcccaggctggagtgcaatggcgtgatctcggctcaccgcaacctccgcctcccaggttcaagcgattttcctgcctcagcctccctagtagctgggattacaggcatgtgccaccacgcccggtaaattttgtatttctagtacagacggggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatctgaccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcacctggcctgatcttccaattttttttttaaa s panTro1.chr19 62203007 319 + 82489036 tttttttcttttttt--gagacggagtttcgctcttgttgcgcaggctggagtgcaatggcgtgatctcggctcaccgcaacctccgcctcccaggttcaagcgattttcctgcctcagtctccctagtagctgggattacaggcatgtgccaccacgcctggtaaattttgtatttctagtagagacggggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatctgaccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcacctggcctgatcttccaatttttttt--aaa a score=45268.0 s hg17.chr17_random 546007 296 + 2618010 a---gctacaaa-ttcagatttcatgtgcagtctctctattttttattaatggtaactaattc-aagttttcagaaacactgtatagaccaaacaaaatctgtgtgcagatcAACAATGCTCTTAGACAACTGAACATACCACAAAACTAGGTAAGAACATCAGA-----GTAGTACGATATCTGCATGAAAGACCTGTAT--ACGGGTAATCA-TTTATTAATAACCAATACATATTTAAACATGATTAGCTGGCAACTAAAATTACCTG-CCTAAATGAGAGACAGTAAATTGCAAAGTCTATAATGA s panTro1.chr19 62203326 299 + 82489036 aaaagctacaaa-ttcagatttcatgtgcagtctctctattttttattaatggtaactaattc-aagttttcagaaacactgtatagaccaaacaaaatctgtgtgcAGATCAACAATGCTCTTAGACAACTGAACATACCACAAAACTAGGTAAGAACATCAGA-----GTAGTACGATATCTGCATGAAAGACCTGTAT--ATGGGTAATCA-TTTATTAATAACCAATACATATTTAAACATGATTAGCTGGCAACTAAAATTACCTG-CCTAAATGAGAGACAGTAAATTACAAAGTCTATAATGA s canFam1.chr9 37103154 300 - 53642819 ---agtcacaaatttcttatttcatttgcaattttccaaattgtaattgatggtaactaatacaaaatttgcaatatcactg--cagtccgaataaaacccaCATGTAGGTCAATAGTGCCTCAAGATCACT-AAGAGAACAGAGAACTAGGTAAGGAGATAGGACTAATTTAATTTAATATCTATATGAAAAAGCTATACCAAAGAGTAATCATTTTATTAATAATCAACAAA----TAAACATGATTAATCTCAAACTAAAATTACCCGACCTAAATTATAGACAGTATGTTAGTAAACCTGTAACTG a score=0.0 s hg17.chr17_random 546303 5 + 2618010 GCTAT a score=200.0 s hg17.chr17_random 546303 2 + 2618010 GC s panTro1.chr19 62203625 2 + 82489036 GC a score=575.0 s hg17.chr17_random 546305 3 + 2618010 TAT s panTro1.chr19 62203627 3 + 82489036 TAT s mm5.chr11 96941468 3 + 121648857 TGT a score=7398.0 s hg17.chr17_random 546308 20 + 2618010 TCAAAATCTGTAACACATAA s panTro1.chr19 62203630 20 + 82489036 TCAAAATCTGTAACACATAA s mm5.chr11 96941471 20 + 121648857 TCAAGATCCAAAACACACAC s canFam1.chr9 37103454 20 - 53642819 TCAAAATCACTAACACATAA a score=-192.0 s hg17.chr17_random 546328 15 + 2618010 AGTGAAAC---------TACTTTG s panTro1.chr19 62203650 15 + 82489036 AGTGAAAC---------TACTTTG s mm5.chr11 96941491 24 + 121648857 ACACACACACACACACACACACTT a score=1035.0 s hg17.chr17_random 546343 19 + 2618010 GCTTACAAAA---AAAATGCTT s panTro1.chr19 62203665 19 + 82489036 GCTCACAAAA---AAAATGCTT s mm5.chr11 96941515 16 + 121648857 ACTTTTTAAA---AAA---CTT s canFam1.chr9 37103993 19 - 53642819 --tTTTAAAACTTAAAAAGTT- a score=19915.0 s hg17.chr17_random 546362 50 + 2618010 CTCATAAGTCTTCATGTTTCAAAACAAAGA-CCTCATTTAATGAATGGCTT----------- s panTro1.chr19 62203684 50 + 82489036 CTCATAAATCTTCATGTTTCAAAACAAAGA-TGTCATTTAATGAATGGCTT----------- s mm5.chr11 96941531 44 + 121648857 CTTACAAATCTTCCTGTTTCAAAACAAAAA-TGTCATCTAA------GTTA----------- s rn3.chr10 86015164 45 + 110733352 CTTATAAATCTTCCTATTTCAAAACAAAAACTGCCACCTAA------TTTA----------- s canFam1.chr9 37104012 61 - 53642819 TTCATAAATCCTTCTGTTTCTAAACAAAAA-TGTCATTTAAAAAAATGTCATTTAATGAACt a score=30400.0 s hg17.chr17_random 546412 80 + 2618010 A--TCTTTT---AAGCAGCAATATT-------CCTT--CACAC----TATTTCACCA-AAACATACCTAAATAGCACTAAAACCTTTGTG-TCCAACTGG s panTro1.chr19 62203734 80 + 82489036 A--TCTTTT---AAGCAGCAATATT-------CCTT--CACAC----TATTTCACCA-AAACATACCTAAATAGCACTAAAACCTTTGTG-TCCAACTGG s mm5.chr11 96941575 90 + 121648857 A--TTTTTTTAAAAGTGGCAATATTAATGGAATTCC--CATTG----TATTTTATCG-GAACATACCAATCAGTTCCCAAAACCTTTATG-CCCAACTGG s rn3.chr10 86015209 86 + 110733352 ACTTCTTTTTAAAAATGGCAATATT-------CCTTCCCATTG----TATTTTATCA-GAACAT-CCAACCAGTTCCTAAAACCTTTACA-CCCAACTGG s canFam1.chr9 37104256 86 - 53642819 a--tTTGTT---AAGTGGTAATAAT-------CCTT--CACACTGTTTATTTCACCAGGAACATTCTTAAACAGCACTAAAACTTTTCTGTCCCAATTGG a score=2242.0 s hg17.chr17_random 546492 12 + 2618010 CGATTTATAGCA s panTro1.chr19 62203814 12 + 82489036 CGATTTATAGCA s mm5.chr11 96941665 12 + 121648857 TTATGGACAATA s canFam1.chr9 37104342 12 - 53642819 ATGTTTATAGCA a score=10944.0 s hg17.chr17_random 546504 70 + 2618010 CTAAAGTTGAACAAAAAAACAAAAAGAATTCTTTGCCTATTCAGAAGTTGACTT---AAAAATTCAGAAACAT s panTro1.chr19 62203826 70 + 82489036 CTAAAGTTGAACAAAAAAACAAAAAGAATTCTTTGCCTACTCAGAAGTTGACTT---AAAAATTCAGAAACAT s canFam1.chr9 37104354 70 - 53642819 TTACATTTCAACAAACA---AAAAAGATCCCTTTGTCTATTTATAAATTCACTTTTAGAAAATTCAACAACAA a score=27647.0 s hg17.chr17_random 546574 311 + 2618010 ggctgggcacggcagctcatgcctgtaatcccagaactttgggaggccaaggtgggtggatcacgaggtcaggggttcgagaccagcctggctaacatggtgaaaccccatctctactaaaaatacaaagattagctgggcgtggtggcaggcacctgtaatcacagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgaaatcgcgccattgcactccaacctggg-cgacaaaagcaagactccatcttaaaaaaaaaaaaaa-tcagaaacacaaagaa s panTro1.chr19 62203896 313 + 82489036 ggctaggcacggcagctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacgaggtcaggggttcgagaccagcctggctaacatggtgaaaccccatctctactaaaaatacaaagattagctgggcgtggtggcaggcacctgtaatcccagctactcgggaggctgaggcaagagaatcgcttggacccaggagggggaggttgcagtgagccgaaatcacgccactgcactccaacctggggcgacaaaagcaagactccatcttaaaaaaaaaaaaaaaTCAGAAACACAAAGAA a score=-165.0 s hg17.chr17_random 546885 3 + 2618010 A-TG s panTro1.chr19 62204209 4 + 82489036 AATG s canFam1.chr9 37104430 3 - 53642819 -ATG a score=3915.0 s hg17.chr17_random 546888 8 + 2618010 AAGCACTT s panTro1.chr19 62204213 8 + 82489036 AAGCACTT s mm5.chr11 96941992 8 + 121648857 AAGCACGT s canFam1.chr9 37104433 8 - 53642819 AAGCACTT a score=258276.0 s hg17.chr17_random 546896 607 + 2618010 ------ACTGG-GGTATG--------------CTCCAATGGGTAAAATGAATAAAAACCTTTCTGA-GTTTGAAGTTTATGCCAGCAAAATAATAA-CTGTGG-TTTAGTT-ACTGGTCTTAAT-CATTACCTAGGCAACCACACTTTCATCCATCAACATCTACAGTGAA-TTTCACAGTAGCCAAGCAGTTAATCCACCAATGTCAAGATACCTGTACAACATTATACATGCCAAATCACA--CAGCACATTACTACTGCAACCATTTGAGAG------AAAGTATTTGTGCATTTTGGAAAGGCACCATGCACAACATCCAATTTCAAGTA--CCTTCCAACTCCTCCTGTGTTTAGGGGAAACTCATCTATTTATACTAATGAATTAAGCTGTTTCT---TGAATTGCTACTAATTTTTTTTTTCCAGGATACTACCA-TTTCTGGAAGGGTGGGAGGGAGGAACCAAAGGAACAAAGGTACTTATCTTAAAAATAGAAATCCATTCACATTTTAAAA-ATTGGTCAGCA--TCTTGTCTTATATTAGAGATGCACTTATTTAAAAAGTTGACCAATaatgggataatctatgtaaagtctctgttttagcacttagtgcctcatatgtagtcatcacttaatagat s panTro1.chr19 62204221 612 + 82489036 ------ACTGG-GGTATG--------------CTCCAATGGGTAAAATGAATAAAAACCTTTCTGAAGTTTGAAGTTTATGCCAGCAAAATAATAAACTGTGGGTTTAGTTTACTGGTCTTAATACATTACCTAGGCAACCACACTTTCATCCATCAACATCTACAGTGAA-TTTCACAGTAGCCAAGCAGTTAATCCACCAATGTCAAGATACCTGTACAACATTATACATGCCAAATCACA--CAGCACATTACTACTGCAACCATTTGAGAG------AAAGTATTTGTGCATTTTGGAAAGGCACCATGCACAACATCCAATTTCAAGTA--CCTTCCAACTCCTCCTGTGTTTAAGGGAAACTCATCTATTTATACTAATGAATTAAGCTGTTTCT---GGAATTGCTACTAATTTTTTTTTTCCAGGATACTACCA-TTTCTGGAAGGGTGGGAGGGAGGAACCAAAGGAACAAAGGTACTTATCTTAAAAATAGAAATCCATTCACATTTTAAAA-ATTGGTCAGCA--TCTTGTCTTATATTAGAGATGCACTTATTTAAAAAGTTGACCAATaatgggataatctatgtaaagtctctgttttagcacttagtgcctcatatgtagtcatcacttaatagat s mm5.chr11 96942001 584 + 121648857 ------ACTGGAGATTTG--------------CTCCAAAGAG--ATATGAGTA-----TTTTTCAAAGTATGAAACTTATGCCAACAAAACAAC------TGG-TTTAGTT-GCTGACCTTAAT-CCTCATCTAGGCAACCAT-TTGTCATCTATCAACACATACAGTCAATTTTCATGGCAGCCAAGCATTT-----ATCAATGTCAACATACCCGAACCACATTACATTTG-CAAATCACATTTAGCTAATTACTACCATAACCACCAAGGTG---CTTAAAATGTTT----ACTTTAGAAA-GCACTGTATACAACATCAAATTACCAGTATTTTTTTTCATTCCTCCTATGTTTAGGGAAAATACACCTGTTTATACTAATAAATCAAGCTATTTAT-ACTTAACAGCTTC----TTTCTCTTTTCAAGATACTGACA-TTTTTAGAAGAGT----AAAAGAAGTCAGAGGAACAAAAATATGTACCTCAAAAATAGACCTCCACTAAACCTTTTAAA---TAGTCAGTATTTTTTGCACCTTATTAGAACTGCAT---TTTAAAAGGCAACCAAACACGGGGATAATCTGTAGAAAGTGGCTGAGTTAGCATTTACTGCCTGGTAAGTAGTAATCACTTAAAAGAT s rn3.chr10 86015631 592 + 110733352 ------ACTGG-AGACTG--------------CTCCAGAGAGAGAAATGACTA-----CTTTTCAAAGTTTGAAGC-TATGCCAATAGAACAAC------TGG-TTTAGTT-GCCAATCTTAATCCAACAAACAGGCGAATGT-TTGTTGTCCATCAACACATATAGTCTGTTTGCATGGCAGCCAAGCATCTGATTTATCAATGTCAACATGCCTGAACCACATTACATTTG-CAAATCACATTTAGCTAATTACTACTATAACCACCTTGAAGGTACTTAAAATGTTT----ACTTTGGAAA---GCTGTATACAACATCAAATTACCAGTA---TTTTTCATTCTTCCTATGTTTAGGGAAAACACACCTGTTTATGCTAACAAATCAAGCTATTTGTTACTTAACATCGTC----TTCCTCTTTTCAGGATACTGACACTTTTTGTAAGAGT----AAAAGAAGTCAGAGGAACAAAAATATGTACCTTAAAAATAGAACTCCATTAAACCTTTTAAATGTCAGTCAATATTTTTTATATCTTATTAGAAATGCAT---TTTAAAAGGCAACCAAACAC-AGGATAATCTATAGAAAGTGACTAAGTTAGCATTTACTGCCTGGTAAGTAGTAACCACTTAAAAGAT s canFam1.chr9 37104441 600 - 53642819 AATGACCCTGG-GGTGGGGTGGAGGGAGGTGTCTCCAAAAAGTAAAATGAGTAAAAA-CCTTCCAGAGTTTGAAGTTTATGCCAACAGGATAATAG----CAG-TTTACTT-ACACATTTTCGT-CTTTATCTAAGCAACCATATTTTTATCCATCAACATCTATAGTGAA-GTTAATGATAGCCAAGCAGTTAATCAGTCAATGTCGAGATACCTGTACAACACATTA--TGCCAAATGACATTTACCTCACTACTACTGTAGCATTCTGAGGG------AAAGTGTGTGTATACTTTGGAAAGGCACAGTCTACAACATCCACTTATAAGTA--CATTCTAATTCCTCCTGTGTTTAGGGAAAACCCACCTGTTTATACTACTGAATTAAGCTGCTTGT---TGAATAGCTACTAA-TTTTTTTTTTCAAGATACTGCCA-TTTCTGGAAGGGTGGGAGGGAAGAACCAAAGGAATAAAAATACTTACCTTAATAATAGAACGCTACTCAAATTTTTTAA-ATCTGACAGTATACTCTGCCTTATATTAGACATGCAT---TTTGAAC--------------AGGATA--------AACGTGCTTGCTTTAGCCCTTagtgcctgattcacagtaatcagttaatagat a score=4284.0 s hg17.chr17_random 547503 16 + 2618010 ------gttaAGACATACATAT s panTro1.chr19 62204833 16 + 82489036 ------gttaAGACATACACAT s rn3.chr10 86016260 16 + 110733352 ------ACACACACACACACAC s canFam1.chr9 37105041 22 - 53642819 gttgttattaAGACACACACAC a score=16218.0 s hg17.chr17_random 547519 91 + 2618010 ACACACACACAGGTTAA-------------------------ATTGTGCTCT-CATATCATCTAA----CAGCATTCACCTAACAGTTTATAAAGCTTCTGATCAG--AATGATATGAAGTTT s panTro1.chr19 62204849 61 + 82489036 ACACACACACAGGTTAA-------------------------ATTGTGCTCT-CATATCATCTAA----CAGCATTCACCTAACAGTTTA--------------------------------T s rn3.chr10 86016276 97 + 110733352 ACACACACACCAGATTA-------------------------ATTGCATTCT-CACATGATTTAAAAAGCAACATTTACCTAACAGTTTATAAAGTAACTAATCAGTATATGATTTAAAATTT s canFam1.chr9 37105167 116 - 53642819 ACATACACAGAAACTAAGATTAAACACGTTGTAATCATAAAGATGTTGCTCTGAATATCATCTAA----CAGCATTTATCTAACAATTTATAAAGT-GCTTATCAG--AATGATATAAAATTT a score=58404.0 s hg17.chr17_random 547610 241 + 2618010 AAAAACTATGTATTGTATTATATGGCACTTTGGATATCAGC-ATATGTGTACTACCCCAAGAAGGTAATTTAAAATATCTGTCTGGACATAAGTGTATGTGCTGACTACAACGCAGTATAACACTGCTCTTTGTGATGCTGCTCTTCCAAACAGTAGTGCTGACCTGATGGTGTAGTACATGATTTCTCACCT-TTGACACCTTCATATTAGTAAATATTAGCTGTGTGTTCCACTATCAAAA s panTro1.chr19 62204910 240 + 82489036 AAAAACTATGTATTGTATTATATGGCACTTTGGATATCAGC-ATATGTGTACTACCCCAAGAAGGTAATTTAAAATATCTGTCTGGACATAAGTGTATGTGCTGACTACAACGCAGTATAACACTGCTCTTTGTGATGCTGCTCTTCC-AACAGTAGTGCTGACCTGATGGTGTAGTACATGAGTTCTCACCT-TTGACACCTTCATGTTAGTAAATATTAGCTGTGTGTTCCACTATCAAAA s rn3.chr10 86016479 219 + 110733352 AAGAACTCTGTGCTGTATTGTGTAGTTTTTGAGGTATCAGC-ACAAATGTTCAAGCAAAGAAAGATAATTTACAATAAGCATTTGAACATAAGCATGTGTGCCGATTACAAGAAAATATAAA---------------GTCATCCTTCC-AGCAGTAGCAAGGACCTAACAATGTAGCATGT---TTCTCATA--TTGACACCATCTTGTTAGTAAATGCCGCC--TGTGCTCTGCTATAAAAA s canFam1.chr9 37105328 205 - 53642819 taaaaCTATGTGCTATATTACATAGTACTTTGGATGTCAGCTATACATGTACA-------------GACTTAAGATACCTACATGGACTTAAGTGC-----CTGACTACCACAC--TATAACATTGCTCTTT-------TGTTTTCCC-AACAATAGCACTGACCTGATGATTCAGTACATGATTTCTCACATATTAACATCATCATGTTAGTGA----------TGTGTTCCACTATCAAAA a score=18581.0 s hg17.chr17_random 547851 56 + 2618010 AAACAGGTAATAATTCAAAGAAATTTCAGCATTAAAATCTT--CAGTTTCCCAGTTTA s panTro1.chr19 62205150 56 + 82489036 AAACAGGTAATAATTCAAAGAAATTTCAGCATTAAAATCTT--CAGTTTCCCAGTTTA s rn3.chr10 86017116 54 + 110733352 AAACAGGCATTAATTCAAATAAATTTC--CACTAAAACTGT--CAATTGCTAAGTTTA s canFam1.chr9 37105712 58 - 53642819 ATACAGGTAACAATTCAAAGGAATTTCAGCATTAAGATCTTCACAGTATGCAAACTTA a score=1533.0 s hg17.chr17_random 547907 3 + 2618010 AAA s panTro1.chr19 62205206 3 + 82489036 AAA s mm5.chr11 96943837 3 + 121648857 AAC s rn3.chr10 86017170 3 + 110733352 AAA s canFam1.chr9 37105770 3 - 53642819 AAG a score=53192.0 s hg17.chr17_random 547910 170 + 2618010 CACAAGTGAAACAA---GGTTGGCATATAAAAGTGCACTGATAACAA-GCTCATTTTCAATTTTTCTACTTGATGTTAT-TAAAGGATAGAATGTTAGTGTATCCTTGCTTTGTTTCAAACCCAGGATTAAGTCTTCTTGGCCTCCTATATAGACTG--CACTTCAACT-GAGCCAAA s panTro1.chr19 62205209 173 + 82489036 CACAAGTGAAACAA--GGGTTGGCATATAAAAGTGCACTGATAACAAGGCTCATTTTCAATTTTTCTACTTGATGTTAT-TAAAGGATAGAATGTTAGTGTATCCTTGCTTTGTTTCAAACCCAGGATTAAGTCTTCTTGGCCTCCTATATAGACTG--CACTTCAACTGGAGCCAAA s mm5.chr11 96943840 154 + 121648857 AACAAGTGAAATGCTTAAGTTGGCCTAT-CAATTGTGTTGATAATTA-ACTAATTTTCAATTCTTCT-----ATGCCATAGAAAGAGTAGAATGTCA--------TTTCTTTGTTTCAGTTCTAGGATTAAGTCT--TTGGACTTCTATACAGACTG--TACTTCAAAT-G----AAA s rn3.chr10 86017344 148 + 110733352 AACAAGTGAAATGCTTAAGTTGGCCTAT-AAATTGTGCTGATAAGCA-GCTCACTTTA--------------ATGCCAT-AGAAGAGTAGAATGTCA--------CATCTTTGTTTCAGCTCCAGGATAAAGTCT--TTGGACTTCTATACAGACTG--TACTTCAAAT-GAACCACA s canFam1.chr9 37105773 148 - 53642819 TAGAAGCAAAATGTTCGAGTTGACATGT--------------------ATTTTGTGTCAACTGATACAATATATGGAAT----GGAATAAAATAACAGTG-----TTTCCTTGTTTCAAACCCAGGGTTAAGTCTTTTTGGAGCCCCAAAAAGACTGTACACTTCAACC-GAACCAAA a score=1149.0 s hg17.chr17_random 548080 8 + 2618010 TACTAAGT s panTro1.chr19 62205382 8 + 82489036 TACTAAGT s mm5.chr11 96943994 8 + 121648857 TTCATAAA s canFam1.chr9 37105921 8 - 53642819 CACTAAGT a score=48561.0 s hg17.chr17_random 548088 164 + 2618010 AAGGGCTGTACCAAAGAGGCAGCTTGACGCCTGGTAACAA----------CTTTACAATGGAAGTTTCCT-ATGAGCTAGGGAGGCAGAAATCG-------------------GAGATAACA---------------------TTTTCCTGAATGA---------------------GTCTT----------------------------TACTATAGTCAC-----TCAGGAACATATCTTACATGTACGATAGTAAGACTCAAGAGG s panTro1.chr19 62205390 166 + 82489036 AAGGGCTGTACCAAAGAGGCAGCTTGACGCCTGGTAACAA----------CTTTACAATGGAAGTTTCCTAATGAGCTAGGGAGGCAGAAATCG-------------------GAGATAACAT--------------------TTTTCCTGAATGA---------------------GTCTT----------------------------TACTATAGTCAC-----TCAGGAACATATCTTACATGTACGATAGTAAGACTCAAGAGG s mm5.chr11 96944002 222 + 121648857 AATGGCTGTACTAAAGTGGCAACATGGACCTTGGAAACAATTCTACAATCTTCTACAATGGAAGATTCCC-AGGCACTGCAGAGGTAGGGAGCC-------------------CAATGAGCC---------------------TTCTCTGCAATGAAGTGACGGGCTACATCACCAGGCCTTGCTGTGCTAGAAGGATGACATCATACTGTGTTGTAACCAC----ATGCATAATATGTCTTGCATTTACTACAGTAAGACTCAATA-- s rn3.chr10 86017915 215 + 110733352 AATGGCTGTACTAAA--AGCAGCATGGACCTCGGAAACAA----------TTCTACAATGGAAGATCCCC-AGGCAATACAGAGGTAGGGAGCCAATGAGCCTTCTCTGCAATGAAGTAACATGCTACATCTCCAGGCCTTACTGTGCTGGAAGGA--TGAC---------------GTCAT------------------------ACTGTGTTGTAACCACATACATAATAAATACATCTTGCATTTACTACAGTAAGACTCAATAAG s canFam1.chr9 37105929 161 - 53642819 AATGGCTCTACTGAAGAGGCAATTTGACTATTGGTAACAA----------TTTTACAATGGAAGTTTCCT-TTGAGCTAGGAAGGCAAGAATAT-------------------GAGAGAACTTT-------------------TTTTCCTGAATGA---------------------ATCTT----------------------------TATTACAATCAC-----TCAGAAATACATC-TACAGGTACTA---TCAGACCCAAGAG- a score=40096.0 s hg17.chr17_random 548252 122 + 2618010 GTTTTTTTCTGATTGTCAATGTCCTGAGACTTCAGTAAAAGAAAATCTCCAGTGTGACAATTCC------AAATGCCA----GTCT-GAAGCCTGAGTCAATTTGCCTAATAAAACTGATTTCACCATTAAAA s panTro1.chr19 62205556 123 + 82489036 GTTTTTTTCTGATTGTCAATGTCCTGAGACTTCAGTAAAAGAAAACCTCCAGCGTGACAATTCC------AAATGCCAT---GTCT-GAAGCCTGAGTCAATTTGCCTAATAAAACTGATTTCACCATTAAAA s mm5.chr11 96944224 114 + 121648857 TTTTTTTCCTGATTG-------CCTGATAAATTAAAAAATAAAAAATGTAAGTGCTGTAACTAC------ATTCGCAAT--CATTT-GGAAGCTGAAT-ACTTTCCCTAACGAG--TGACTCCACTGTTAAAA s rn3.chr10 86018290 118 + 110733352 TTTTTTTCCTGATTG-----------ACAAATCCAGATTAAAAAAAGCCCAGTGTTGTAACTACATGTAAATGTATAAT--GATTTGGAAGCCTGAGATACTTTCCCTAATAAG--TGACTCCACTGTTAAAA s canFam1.chr9 37106090 124 - 53642819 GTTTTTCTCTGATTGCCAAGGCCCTCAGATTTTAGTAAAAGAAAATCTCCAGTGTGACAACTCC------AAATACCAGTCAGCCT-GAAGCCTGAGTCACTTTGCCTTACAAG--CTATTTCATCGTTAAAA a score=60711.0 s hg17.chr17_random 548374 115 + 2618010 TAGCAATAATTGTTGCCTTGGTGGAACAGTTCTATAATAGCTAAAGACAAGAAGAAGCAGATAATT-AGTAAACTCAAGTTGAGCCAAGTTTTCTAACAA--GAAACACTGAAAAGAG s panTro1.chr19 62205679 115 + 82489036 TAGCAATAATTGTTGCCTTAGTGGAACAGTTCTATAATAGCTAAAGACAAGAAGAAGCAGATAATT-AGTAAACTCAAGTTGAGCCAAGTTTTCTAACAA--GAAACACTGAAAAGAG s mm5.chr11 96944340 114 + 121648857 TTGCAGTGGTTGTTGCGCTGGTGGAGCAGAACTGTAATTTCTCAAGTCAATGGGAAGCAAACAATC-AGT-CACTGGGACTGAGCTAAATCTTCTTACAA--GCGATGCTGGAAAGAG s rn3.chr10 86018615 117 + 110733352 TTGTAATGGTTGTTGTGTTGGTGGAACAGAACTATAATTTCTCAAGTCAATGAGAAGCAAATAATCAAGTCAATTGGAACTGAGCTAAATTTCCTTACAA-GGAGATGCTGAAAAGAG s canFam1.chr9 37106216 116 - 53642819 TGGTAATAATCATTGCCTTTGTGGAACAGGGCTATAATTTCTAAAGACAATAGG-AGCAAATAATT-AGCAGACACAAATTGAGCCAAGTTTTCTAACAAAAGAGACATTGAAAAGAG a score=1342.0 s hg17.chr17_random 548489 6 + 2618010 CCATTT s panTro1.chr19 62205794 6 + 82489036 CCATTT s mm5.chr11 96944454 6 + 121648857 CAAGTC s canFam1.chr9 37106332 6 - 53642819 CAAGTT a score=5163.0 s hg17.chr17_random 548495 29 + 2618010 GCAGAAGGTCAAAAATAATTACCATTAAT s panTro1.chr19 62205800 29 + 82489036 GCAGAAGGTCAAAAATAATTACCATTAAT s canFam1.chr9 37106338 28 - 53642819 GCAGAAAGTCAAATGTAG-TACTACTAAC a score=21346.0 s hg17.chr17_random 548524 77 + 2618010 GTAAAAATGCAAAAGGCACAGAATATTGGTATGTGATGTTTGTGGCTACT--AATATGCAATTAAAGTTTTAAACTATA s panTro1.chr19 62205829 77 + 82489036 GTAAAAATGCAAAAGGCACAGAATATTGGTATGTGATGTTTGTGGCTACT--AATATGCAATTAAAGTTTTAAACTATA s mm5.chr11 96945456 77 + 121648857 ATAAAGAATTTAAATACACAGATTACTGACATGTGTACTCTGTGACTACT--TATAAACAGGATGAAGTTAAAACTGTA s canFam1.chr9 37106366 79 - 53642819 ATAAAAATTTTAAACATACAGAACATTGCTATTTATTGTTTGTGGCTACTTATATATGCAATAAAACTTTAAAAATATA a score=-595.0 s hg17.chr17_random 548601 7 + 2618010 CGTAGGA s panTro1.chr19 62205906 7 + 82489036 CATAGGA s mm5.chr11 96945533 2 + 121648857 CT----- a score=15641.0 s hg17.chr17_random 548608 85 + 2618010 ATAAAAAGGAATAATACGCACCTACCTGAAG-------AAAGAAGTTACTTCTAGAGGCAGGGTGGGACGAGATGGAAACGGGCTTTAGTGG s panTro1.chr19 62205913 85 + 82489036 ATAAAAAGGAATAATACGCACCTACCTGAAG-------AAAGAAGTTACTTCTAGAGGCAGGGTGGGACGAGATGGAAATGGGCTTTAGTGG s mm5.chr11 96945535 82 + 121648857 -----ATGCCGCATTCTGCACTTATCTCTAGGTGGGTAACAGGAGTTACCTTT--GAGCATAGTAAAACAGGA---AAATGAATTTCCGTGG s canFam1.chr9 37106641 81 - 53642819 ATATATAGGAATAAT----ACCTATACCTAA-------AAAGAAGCTACCTTTGGGATGGGGGTGAGAAGAGATTGAAATGGATTTTAGTGC a score=6592.0 s hg17.chr17_random 548693 9 + 2618010 TATCTGTGA s panTro1.chr19 62205998 9 + 82489036 TATCTGTGA s mm5.chr11 96945617 9 + 121648857 TATTCGTTA s rn3.chr10 86020814 9 + 110733352 TATCTGTGA s canFam1.chr9 37106722 9 - 53642819 TATCTGTGA a score=-488.0 s hg17.chr17_random 548702 16 + 2618010 CATTTTA-TTCCCCCCC s panTro1.chr19 62206007 17 + 82489036 CATTTTATTTCCCCCCC s rn3.chr10 86020823 9 + 110733352 -------CTTTTTCCC- s canFam1.chr9 37106731 14 - 53642819 CATTTTACTGCCCA--- a score=76638.0 s hg17.chr17_random 548718 182 + 2618010 AAAAAAAGCATGCACAGTCTGATGAAAAT-GGGGCAAAATGTTAACAT-CTGTTTAATCT-CATAGTGTGTGAC-TTTCTTGTATTTCTAAAATACTTCCtaatttaaaataaaattttaaaGAGATTACAAGTGACCAAATAAACCAAGAACCACATACTTGTATGGTGTTCAAAACAAAATCAC s panTro1.chr19 62206024 184 + 82489036 AAAAAAAGCATGCACAGTCTGATGAAAATGGGGGCAAAATGTTAACATCCTGTTTAATCT-CATAGTGTGTGAC-TTTCTTGTATTTCTAAAATATTTCCtaatttaaaataaaattttaaaGAGATTACAAGTGACCAAATAAACCAAGAACCACATACTTGTATGGTGTTCAAAACAAAATCAC s mm5.chr11 96946007 167 + 121648857 AAAAATAGTATAAACAGTCTAAAG-CAAT-GAGGCAATATACTAA-AT-CTAGGTAA--------------GTC-GTTTCTGTATTTCTAAAACATTTCCCGGTTCAAAATAAAAATAAAATCAGATTACAAATGACCAAATAAAACAAAAACTACAGGTTCAAAAGGTGTTCAAAAGTAAATCTC s rn3.chr10 86020835 165 + 110733352 AAAGATAGTATAAA-AGTCTGATG-CAAC-GAGGCAA-ATATTAA-AT-CTAAGTAA--------------GTTATTTTCTGTATTTCTAAAACATTTCCTGATTCAAAATAAAAATAAAAACAGATTACAAATGACCAAATAAATCAA-AACCACACGTTCATAAGGTGTTCAAAAGTAAATCTC s canFam1.chr9 37106745 183 - 53642819 AAAAACAACAAGCACAGTCTGAAACAAAT-GAAGGAAAACATTAATAT-CTATTAAACATGTGTGGTAGGTTAC-TTTTCTACATTTCTAAAATACTCCCTAATTTAAAGTAAAATCTTAAAGTAGTTACCAGTGGCTAAATAAACTGAGAACTACATACTCGAATGATGTTCAAAACTGAATTGC a score=-31.0 s hg17.chr17_random 548900 1 + 2618010 T s canFam1.chr9 37106928 1 - 53642819 C a score=273.0 s hg17.chr17_random 548900 1 + 2618010 T s panTro1.chr19 62206208 1 + 82489036 T s mm5.chr11 96946399 1 + 121648857 T a score=0.0 s hg17.chr17_random 548900 1 + 2618010 T a score=222524.0 s hg17.chr17_random 548901 502 + 2618010 AAAATCTAGAGAACTAATCTCAGTTAACAAC--AAAAGCCATCCGAAGGCTCAGTTATTTCCCACTGACTCACATACAGATTAGAGTAAGATTTACTTCACAACAAGAGCAGGCTCATTTATGTGGCAAAGTTCGGAGAAGCTTCACAGATAATTTACTACTCAAGACCACATTTACCCAGGTTGTATCAGA--GTATCAGTTGT-ATCTAGAACCAGGAAGCTAA----AAAGAAAGAAAAAAAA-AAAGGCCTGGATGAAAAG---CCAAAATAGGTGATACAAAGTCCGTACAATAAAACACATACCCTTTACTCAGAAGAGAATCCAACAAACTCTCACACAGCAATTGATTTTTTAGCCCAAACAAGCTT-GTTTATCTGGCTACTAAGGCTTCTTCAGAT-GAAGTTCAGTAAAATACAAGAGGGAAGAAATTGCACAACAGGCA--GCAACAAGGCACAATAAGCAGCAAGAAGAA-----TCTGAGAGTAAGGAA-AACA-AAACAATTTTAAAGAAC s panTro1.chr19 62206209 507 + 82489036 AAAATCTAGAGAACTAATCTCAGTTAACAAC--AAAAGCCATCCGAAGGCTCAGTTATTTCCCACTGACTCACATACAGATTAGAGTAAGATTTACTTCACAATAAGAGCAGGCTCATTTACGTGGCAAAGTTCAGAGAAGCTTCACAGATAATTTACTACTCAAGACCACATTTACCCAGGTTGTATCAGA--GTATCAGTTGT-ATCTAGAACCAGGAAGCTAAAAAGAAAGAAAGAAAAAAAA-AAAGGCCTGGATGAAAAG---CCAAAATAGGTGATACAAAGTCCATACAATAAAACGCATACCCTTTACTCAGAAGAGAATCCAACAAACTCTCACACAGCAATTGATTTTTTAGCCCAAACAAGCTTAGTTTATCTGGCTACTAAGGCTTCTTCAGAT-GAAGTTCAGTAAAATACAAGAGGGAAGAAATTGCACAACAGGCA--GCAACAAGGCACAATAAGCAGCAAGAAGAA-----TCTGAGAGTAAGGAA-AACA-AAACAACTTTAAAGAAC s mm5.chr11 96946400 481 + 121648857 AAAATTTGGGGTGCTAAACT-------CAAC--AACAACCATCAGAAGGTTC-GTACTTCACCACTGACTCGAGTACAGATTAGAGT-AGATTTACTTTACAATAAAAACAGGCTCATTTATGTAGCAAAGTTCAAAGATGTTTCACAGATAACTTGCTACTCAAGACTACATTTATCCTGGCTGTATTAGA------CATTGATAATCTAGAACCAGGAAGTTAA----ACAAAAAGAAAAAAAAGAAAGACTTGAACACAACA---GCAGACTAGATACTACAAAGTCCATACAATAAAGCTGGTCCTGTTCACTCAGATGCAAATCCACCCAACTCTCACTTCGAAACTTGTTTT------------------GCTTGACTCATTACATAGACCTCTCCTGCTCCAGGTTCAGTAAAACAGAAGA--GAAGACAGTGCAAAATAGGCAGTGTGACAAGACACAACCCACAACAAAAAGCAGTATGCCCGAGAGCAAGGAGCCACA-AACCAACTCTAAAGGAC s rn3.chr10 86021000 481 + 110733352 AAAATCTGGGGTGCTGAACTCAA-TAACAA---AACAACTATCAGAAGGCTTGGTTCCTTGCCGCTGACTCACAGATAGATTAGAAT-AGATCTACTTTACAATAAAAACAGGCTCATTTATGTAGCAAAGTTCAAAGAAGCTTCATAGATAACTTGCTACTC-AGACTACATTTATCCCAGCTGTATTAGA------CATTGATAATCTAGAACCAGGAAGTTAA----ACAAAAAGGAAAAA---AAAGGCTCCAACACCAGAGTTCCACAATAGATAATAT-GAGTCCGTACAATAAAGCTTATACAGTTTACTCTGAAGCAAAGCCATCCAGCTCGCACTTAGAAATTGGTTTCTTTTGAC-----------TCTTACATTACCTCT---------CCAGCTCACTGTTCAGTAAA----CAGAGGAGAGGCCGTGTGGAGTGGGCAGTGTGACAAGACACAATTCACAACAGAAAGCAATGTGCCTGGGGGCAAGGAG-CCCACAGCCAACTTCGAAGGAC s canFam1.chr9 37106929 498 - 53642819 AAGATTTGGAGAACTAATTTCAGTTAACAACAAAACAGCCACTGGAAGACTCAATCTTTTGCCACTGATTCACATACAGATTACAGTAAGATCTACCTCACAATAAGAATAGGCTCATTTATGTAGCAAAGTTCAGAGAAGTTTCATAGATAATTTACTACTCAAGATCGTATTTGTCCAGGTTGTACTGGACAATATCAATT---ACCTAGAACCCGGAAGTTAA------------AAAAAAAA-AAAAGACTATATAAAAG----CCAGAATAGATGATACAAAGTCCATACAATAAAGCTCATTCCCTTCATTCAGAAGAAAGTCCATCAAACCTTCACTTAGAAATTTCTTTTTAAGGTCAGACAAGCT--TTTTATCTGGTTACTTATACCTCCTCAGAT-CAAGTTCAATAAGCTAGAAGAAGGAATAAATGGCACAATAGGCA--GCAACAAGGCACAATAAGCTGCAAGAAGTAAAAA-GCGAACAGTAAAAAA-AAAA-AAAAAACAATAAAGAAC a score=1939.0 s hg17.chr17_random 549403 5 + 2618010 AGACA s panTro1.chr19 62206716 5 + 82489036 AGACA s rn3.chr10 86021481 5 + 110733352 AGGTA s canFam1.chr9 37107427 5 - 53642819 AGATA a score=300.0 s hg17.chr17_random 549408 1 + 2618010 C s panTro1.chr19 62206721 1 + 82489036 C s rn3.chr10 86021486 1 + 110733352 C a score=80251.0 s hg17.chr17_random 549409 884 + 2618010 AGGCTagccgggtgcggtggctcaggcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcacgagttcgagaccagcctggccaatatggtgaaaccccttctctactaaaaattcaaaaattagcctggcatgatggcaggtgcctgtagtcccagctacttggatgaggcaggagaatcgcttaaacccgggaggcggaggttgcagtgagctgcgatcacgccactgcactccggccttggcgacagagaaagactctgtctcaaaaaaaaaaaaaaaaaaaaaagaaCAGATATGgactaggcgcggtgggtcatgcctgtaatcccagcactttgggaggcagaggcgggcggatcacctgaggtcgggtgtttgagaccagcctagctaacatggtgaaacctggtctctacagaaatacaaaaattagccaggtgtggtggcatgcacctgtaatcccagctactagggaggctgaggcaggagaatcccttgaactagggaagtggagtttgcagtgagccgagatcgcaccactgcacactccagcctggcctaggcaacagagtgagactctgtctc---aaaaaaaaaaaaaaaaaaaaaaaagaaCAGATATggcttggcgcggtggctcacacttgtaatcccagcactttggcaggcggaggcaggcagatcacctgatgtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctactagggaggctgaggcaggagaactgcctgaacccgggaggcagaggttgcagtgagccgagattgtgccactgcac s panTro1.chr19 62206722 878 + 82489036 AGGCTggccgggtgcggtggctcaggcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagttcgagaccagcctggccaatatggtgaaaccccttctctactaaaaattcaaaaattagcctggcatgatggcaggtgcctgtagtcccagctacttcgatgaggcaggagaatcgcttaaacccgggaggcggaggttgcagtgagctgagatcacgccactgcactccggccttggcgacagagcaaga--ctgtctc-------aaaaaaaaaaaaaaagaaCAGATATGgactaggcgcggtgggtcatgcctgtaatcccagcactttgggaggcataggcgggcggatcacctgaggtcgggtgtttgagaccagcctagctaacatggtgaaacctggtctctacaaaaatacaaaaattagccaggtgtggtggcatgcacctgtaatcctagctactagggaggctgaggcaggagaatcccttgaactagggaagtggaggttgcagtgagccgagattgcaccactgcacactccagcctggcctaggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaagaaCAGATATggcttggcgcggtggctcacacttgtaatcccagcactttggcaggcggaggcaggcagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctactagggaggctgaggcaggagaactgcctgaacccgggaggcagaggttgcagtgagccgagattgtgccactgcac a score=14152.0 s hg17.chr17_random 550296 157 + 2618010 ctccctcctgccatcttgtgaagaaggtgcctgcttccccttccccttctgccatgattgtaagtttccggaactgcaagtcaattaagcctgtttcctttataaattacccaatctcaggtatttctttacatcagtgtgaaaacaaatgaataca s panTro1.chr19_random 41312368 157 + 57627672 ctccctcctgccgtcttgtgaagaaggtgcctgcttccccttccccttctgccatgattataagtttccagaactgcaagtcaattaagattgtttcctttataaattacccaatctcaggtatttctttacatcagtgtgaaaacaaatgaataca a score=50675.0 s hg17.chr17_random 550453 451 + 2618010 GTCCCCTTCCCTGA-GGTGCCTTCTCCTTAGGCAACCAGCTGCCCCCATGCTCCTCTTCT-------------GCCCCCC-----TGGTATTTCCTTTCCCCTCATGAGGCCCAAGTGATCCACATGGCCAGCCACAGCCCCATCCTACTGCAGGCCTGTGTGGCTGCTAGAGAGGCCAGGCTCCTTTCCGCACCCCGAGGCTGCCCGATATGCTTTCTGCATCCTGTAGAAAACTGACCCACTATTCTCATACTGGTG-CAACTTCTTCCATTACCTCAAAACTGGACAACGTGAA------CTTGTTTCTTGTCTCTTCTTGCTAGGGCTGTCACTGGGACAGTCCGAGATGGGGGGGTGGGGGGAGACA-----atggatgaatggatggatgaatggaCAGTAGTCCAGGGAGATGTCCCTGTGTGTCCTGAACTGGGACCTTCCTCCAATGAGAAGCCTTCCTGAGTGAGTTTATAc s panTro1.chr19_random 41312525 455 + 57627672 GTCCCCTTCCCTGA-GGTGCCTTCCCCTTAGGCAACCAGCTGCCCCCATGCTCCTCTTTT-------------GCCCCC------TGGTATTTCCTTTCCCCTCATGAGGCCTGAGTGATCCACATGGCCAGCCCCAGCCCCATCCTACTGCAGGCCTGTGTGGCTGCTGGAGAGGCCAGGCTCCTTTCCGCACCCCGAGGCTGCCCGATATGCTTTCTGGATCCTGTAGAAAACTGACCCACTATTCTCATACTGGTG-CAACTTCTTCCAATACCTCAAAACTGGACAACGTGAAC-TTATCTTGTTTCTTGTCTCTTCTTGCTAGGGCTGTCATTGGGACAGTCCGAGATGGGGGGGTGGGGGGAGACA-----ATGGATGAATGGGTGGATGAATGGACAGTAGTCCAGGGAGATGTCCCTGTGTGTCCTGAACTGGGCCCTTCCTCCAATGAGAAGCCTTACTGAGTGAGTTTATAc s mm5.chr11 60889528 396 - 121648857 GCCCCCTTCTGGAACGGTGCCTTAT--TTAGGCCTGTAGCTACATGTACCCTCCTCCATTCCAGGACTAAGTGGCCTCCTTACCATAGGCTTTCTTTTCACCTCATTAGGCCCAAGTAATCCACACAGCCATCCCCAGGTCCGCCTCACTGATGACGTG-------------------GGATTCCTTTTCTAGCCCCAAGAC--ACTGCTATGCTTTCTG---------AGGTATTGGCCC--------CAGACTGATGACACCTTTCCCCAAGACCTTAAAGCTGGACACCTCTGGCGCTGGCCCATTCTGTTTCTCCACATGCT---------------------------------TTGGAGGCAGACAAACCCAGGGATGGATGGATGCATGCATG----------CATGTATGCATGCTTGTGTCCCGGGA---GGGTGACTCCACCAAGCATCAGGTCCCCTGGGTGAGCTTAGAC a score=22418.0 s hg17.chr17_random 550904 249 + 2618010 agtcatcccttggtatccatggattagttctagggtccccggggatgccaaaatccatggatcctcaagtctctgacataacatggcctagtatttacatatcagctatgcacatcctcccgtagacattagaccatctctggattattcatgatgtgtaatacaatgcagatgctacataaatggtcgtgatactggattctttagggaataatgacaagaacaaactctgcacatgttcaatagaaa s panTro1.chr19_random 41312980 249 + 57627672 agtcatcccttggtatccatggattagttctagggtccctggggatgccaaaatccatggatcctcaagtctctgacataacatggcctagtattcacatatcagctatgcacatcctcctgtagacattagaccatctctagattattcaggatgtgtaatacaatgcagatgctacataaatggtcgtgatactgtattctttagggaataatgacaagaacaaagtctgcacatgttcaatagaaa a score=91.0 s hg17.chr17_random 551253 1 + 2618010 A s panTro1.chr19 35045058 1 + 82489036 A a score=10002.0 s hg17.chr17_random 551254 88 + 2618010 CTAAGCATATGCTCCACTTCCTCTCCTTCCTCATTGAACTCTTTCACTAAAAGAACAGTGCAAGAGAGACTTAAACTGTTTGCCTCAT s panTro1.chr19 35045059 88 + 82489036 CTAAGCATATGCTCCACTTCCTCTCCTTCCTCATTGAACTCTTTCACTAAAAGAACAGTGCGAGAGAGACTTAAACTGTTTGCCTCAT s rn3.chr10 65129596 71 + 110733352 CTGGATGTCTGCCTCACTGGCCCTTCCTCCTCTCTGAACTCT--------AAGACCAG-----GGGACACGCAGAGCAT----CTAAG a score=28732.0 s hg17.chr17_random 551342 132 + 2618010 TCTTAAGACCTTTCAGGAAAAGTGTT-GGCAGGGAAGGAAATCTCCCAGCTCTGGGAAA-CAGTCTTGTGGATTATCTGC----TGGTTTCAT-----TGATCTGTGCTGTCC-TCC--CTGCATTCATTAGGAAAACTGGCCTTG s panTro1.chr19 35045147 132 + 82489036 TCTTAAGAACTTTCAGGAAAAGTGTT-GGCAGGGAAGGAAATTTCCCAGCTCTGGGAAA-CAGTCTTGTGGATTATCTGC----TGGTTTCAT-----TGATCTGTGCTGTCC-TCC--CTGCATTCATTAGGAAAACTGGCCTTG s rn3.chr10 65129667 140 + 110733352 TCTTTAGGCCTTTTGTG---GTTGTTAGGCAAGGGTGGGGATTTCCCAGCCAGGTGGAG-GAGGGTTGTGAGCGATCCGATCCGTGATTTTATCTGCATGGTCCCTCCTCTCCTTTC--CTCCTATCCTGGGGGAAAGTAGCCTCA s canFam1.chr9 18861681 135 - 53642819 TCTTAAGAACTTTTAGGAAAAATTTT-GGCAGGTAAGGACATTTCCCCACCAGGAGAAATGGGTGTTATGCATTCCTTGT----GGGTTTTGT-----TCATTTGTGCTGTCC-CCCTGCCCCAATCATTAGGAAAACCAGCTTTG a score=30511.0 s hg17.chr17_random 551474 115 + 2618010 GTTCAAATAAGAACAGGATTTGTCCTGGTGACAGAGAAAGGTTTCTTCTGATGTCCATATATCTCCGA-GGGGGATGCTTTCTCCAGGCAGAGGCTGTGGCCAAGC--GATCGGGGGG s panTro1.chr19 35045279 115 + 82489036 GTTCAAATAAGAACAGGATTTGTCCTGGTGACAGAGAAAGGTTTCTCCTGATGTCCATATATCTCCGA-GGGGGATGCTTTCTCCAGGCAGAGGCTGTGGCCAAGC--GATCGGGGGG s rn3.chr10 65129807 112 + 110733352 GTTCCAGTGAGAACAGGATTTGTTCTGGAGATAAAGAAGGGCTACCTCTGGTGTCCACACA-CTCTGA-ACGAGATGC-TCCTTGTGGCAAAAG-TGTGGCCAAGT--GCTCCATGAC s canFam1.chr9 18862136 115 - 53642819 GTTCTAATGAGAGCCAGATTTGTGCTGGGGACAAGGAAGGGTTTGTCCTAATGGCCACTGATCTCCCAGGGGGGATGCTCTCTTTAGATGGAGGGTGTAGTCAAGCCTGGCTGGG--- a score=8793.0 s hg17.chr17_random 551589 71 + 2618010 CTCAGAGG-GCTGCTGGGAAGGGGTGGGCCC--CTCTCTCCCCAGAGGGAAACTC-----CTGG---------GGACCTCTCGAGCAC s panTro1.chr19_random 57626610 71 - 57627672 CTCAGAGG-GCTGCTGGGAAGGGGTGGGACC--CTCTCTCCCCAGAGGGAAACTC-----CTGG---------GGACCTCTCGAGCAC s rn3.chr10 65129920 54 + 110733352 CCCACA----CTTCTAGGGAAGGCTGTAGCC------------------AAACTCC---TCTGG---------AAAACTCTGGAGCAC s canFam1.chr9 18862251 88 - 53642819 CTCGGGAGTGCTGCACCGGGAGGCTGCGGCCCACCCTTTTTCCACAGAGAAGCCCCAGGCCTGGTTGGCCACAGGCCCTCTTGAGCAC a score=1345.0 s hg17.chr17_random 551660 6 + 2618010 CCCTGC s panTro1.chr19_random 57626681 6 - 57627672 CCCTGC s canFam1.chr9 18862339 6 - 53642819 CCCAGC a score=291.0 s hg17.chr17_random 551666 3 + 2618010 CCA s panTro1.chr19_random 57626687 3 - 57627672 CCA a score=1692.0 s hg17.chr17_random 551669 6 + 2618010 tccttt s panTro1.chr19 32757301 6 - 82489036 tccttt s canFam1.chr9 34785382 6 + 53642819 tccttt a score=23295.0 s hg17.chr17_random 551675 171 + 2618010 aaacataaattcataaatacaaacaagtaggcc-attca--cagaaatatataaa----------atatgtcataggacgggtggcactctcatatggcaataattatgacaggggccggcaaatgacCTGAGTGACCCGGAGTGACCTGAGCACTGACTCCCAAATGCCCTCCATAGGATGTT s panTro1.chr19 32757307 171 - 82489036 aaacatgaagttgtaaatataaacaggtaggcc-attca--caggaatatctaaa----------ttatgtcacaggaaaggtggcactctcatatggcaataattacgacagaggccagcaaatgacCTGCGTGACCTGGAGTGACCTGAGCACTGACTCCCAAACGCCGTCTGTAGAACGTC s rn3.chr10 45660890 143 - 110733352 AAACATAAATAAATAAATGTAATTAATCACCTC-AAGTAATCTGACATATATAAAGAAGAGTTGGTCAAGTCACAGGAAAG-------CCCTGTGTGCCAATG---------------GGGAAATGGCTTAAG-GACCCAGAGTGGCCCGAG---TAATTCCAGGTCACA-------------- s canFam1.chr9 34785388 169 + 53642819 agacataaatttttgagtttaaaaaggtgagtcaattta--cttgaaaatataaa----------atatgccattggaaaggcatcacgtacatatggtgagaattacaaagaaggcaggtaaacg--CTGGC-AGCCCAGAGTGATCTGAGCACTCATTTCCAAATGTCCTCCTTAGGACATG a score=111045.0 s hg17.chr17_random 551846 270 + 2618010 CTGCATCCCCGAGACCCTTTCCTGGGTCCTCCTGGGCCCTACCACCCCC--------------TAGACCATCCAGACCTCAGGTCATCCCCCTGTCTGTTGACAGAGTAGTCTCCGTTCCTGAATGTGCTGGTCACCAGCAACAGCAGCTGCTCCTCCTCCAGGAAGCTCAGCCTATACTTCTACATGCAGAGAACCTGGACGGCACCC-AGGTGGACCTAAGCCTTCAGCTCCCAGTAGACGCTCTGGGTTTCCTACCCTG--CCCAGACACTCTGGGCTTCCCCC s panTro1.chr19 32757478 270 - 82489036 CTGCATCCCCCAGACCCTTTCCTGGGTCCTTCTGTGCCCTATCACCCCC--------------TAGACCATCCAGACCTCAGGCCACCCATCTCTCCGTTACCAGAGCAGTCTCCGTTCCCGAACGTGCTGGTCACCAGCAACAGCAGCTGCTCCTCCTCCAGGCAGCTCAGCCTGTACTTGTTCATACAGAGAACACGGACGGCACTG-AGGTAGACATAAGCCTTCAGCTCCCAGTAGACACTCTGGGTTTCCTACCCTG--CCCAGACACTCTGGGCTTCCCCC s mm5.chr11 43090264 240 - 121648857 CTGAGTCCCCCGGACCCTTTCCTTGGTCCTCCCAAGC-------CTCTC--------------TG------CCGAGTCTCCGGCCACCCACCTGCCCATTGCTGGGACAGTCTCCATTCCCAAATGTGCTTGTCACCACCAGCAGTAGTTGCTCCTCTTCCAAGGTGCTTGCCTTATACTGGTCCATGCAGACAACCTGTGTGACAACC--GTTGAACATCAGCCCCCAGCTCCCAA---------GGGGCCGCTTACACT---------CACTCCAGACTCCTTCC s rn3.chr10 45661033 251 - 110733352 CCGAGTCCCCTGGGCCCTTTTCTTGGTCCTCCTAAGCCCCTCTGCCCCC---------------AGATGAGCAGTGTCCCT-GCTACCTACCTGCCCATTGCTGGGGCAGTCTCCATTGCCAAATGTGCTTGTCACCACCAGCAGTAGTTGTTCCTCTTCCAAGGTGTTTGCCTTATACTGTTCCATGCAGACAACCTGTGTGGCACAC--CATGGATGTCAGCCCTCAGCTCCCAG---------GGGGTCCCTTACACT---------CACCCCAAGCTCCTTCC s canFam1.chr9 34785557 279 + 53642819 CTAAATCCCC-AGATCCTTTCCTTGGCTCCCTTGGGGCCTGGCATCCCCCACAACCCTGCACCCAGACCA-CTGGGCCCCAGGCCACCCACCTCTCCATTGCCAGGGGAGTCTCCGTTCCCAAACGTGCTGGTCACCACCAACAGTAGCTGCTCCTCCTCCAGGTGGCTCAGCTTGTACTCGTCCATGCAGAGAACCTGCAAGGCCCCGGGGGTGGACATCAGCCCTGTGTTCCCAG------GCCGAGGCCCTCTATGCCATCTCCAGATGCCCTGTGCTTCCTCC a score=10293.0 s hg17.chr17_random 552116 109 + 2618010 CACACCT------CCCCTCGTCCGGGGCTCCTGTGTGCATCTGTCTCTCCCAGTGCCCAGCACAGGCGTGGAACGGAAG-------------------AGGTGAATGGACCGATTTGAACACAtcatcctggat s panTro1.chr19 32757748 109 - 82489036 CACACCT------CCCCCAGCCTGGTGCTCCTGTGCTCATCTGTCTCTCCCAGTGCCCAGCACAGGCGTGGCACGAAGG-------------------AAGCGAATGGACTGATGTGAACACATCATCCTGGAT s canFam1.chr9 34785836 127 + 53642819 CCAACCCAGGAGACCCCTTATCA------CCTGTTTCCCCCCACCCCGCCCA-CGCCCAGCACCAGTGTGGTACAGGGGTGAGGGTTCTGTGAATCCCAGTCAAATAAACCTATATGAATACCTCGCTCCTCAT a score=22872.0 s hg17.chr17_random 552225 142 + 2618010 tctccgttccctctcaagccctgcagctaacccatcggcaagccctggaggctcttcctccaaaatcctgccta-tcccatgtgcaaacgcctctcaccatgtccactgctaTTTGCAGTTCTGTGTGTGTGGAAATACTTCC s panTro1.chr19 49607155 142 + 82489036 tctccttccccgctcaagccctgcagctaacccatcggcaagccctggaggctctgcctccaaaatcctgccta-tcccatgtccaaacacctctcaccatgtccactgcTCTTTGCAGTTCTGTGTGTGTGGAAATATTTCC s canFam1.chr9 34785963 133 + 53642819 CCTCCTACCCCACTCAAGCCCCAACACCAACACTTCCACAAGCCCTGGAGGGCTTGCCTTCAAAATCCTGCTAAGTCCCAAATGAAAACACT----------TCCACTGCTACTCTGAATTCGGAGTGTGTGGACGTATTTTC a score=58211.0 s hg17.chr17_random 552367 644 + 2618010 ACCAATTTGGAATGAACAGGTCACAGCTGTGCCTGGAGGGAATGCCCAGGGAAATGTGCCTTCGCCTTGCTGTTCTATCCAGGCCCACCCAGCTGAGGATGGGGGACCTGCCACCACTCTCCTGGCAGTTCCGGACTCCTGGGAACCGGCAGGTGAGGACCCAAGAGTGTTTTCAGTGACCCGGCTGACCTGGTCATCCGTCAGTCCCACCTTGGCCTAGGCCTCTATACAGCACAGATCACAGCTCATTCCATCCTGGCATTACACTGGCCTGTGCCCTGTCCTCAGGGTCACATCCGTCTCCCAGAAGCCGTGCAACCCTGGAAAACCCAGGTCTAACAGTCAGGTTCCTCCTCCGTGCATTAACAATGGCATTGACGCCTGCTTTGCGGGACGCTGGGAGGGGAGAGGGAGGTGTATGCTGGAgagctccccaggggcaaggcctggctctgcgtcacccactgtcagatcctgagagcctggggctggcccagcacgtggccaccgttccctaagagttGGATTTCATCCCTCAGTGCTGAAGGCAGGGGATAGAGCTTAGACAGACCCCCTGCATCCTGTCTTCTTTATCTACAGCTTTCTCATCCTTGTCCCTTTCACGTGCACCCGGCAGAGCAGGT s panTro1.chr19 49607297 644 + 82489036 CCAAAATTGGAATGAGCAGGTCACAGCTGTGCCTGGAGGGAACGGCCGGGGAAATGTGCCCTCACCTTGCTGTTCTATCCAGGCCCACCCAGCTGAGGATGGGGGACCTGCCACCACTCTCCTGGCAGTTCCGGACTCCTGGGAACCGGCAGGTGAGGACCCAAGAGTGTTTTCAGTGACCCGGCTGACCTGGTCATCTGTCAGTCCCACCTTGGCCTAGGCCTCTATGCAGCACAGATCACAGCTCATTCCATCCTGGCATTACACTGGCCTGTGCCCTGTCCTCAGGGTCACATCTGTCTCCCAGAAGCCATGCAACCCTGGAAAACCCAGGTCTAACAGTCAGGTTCCTCCTCTGTGCATTAACAATGGTGTTGACGTCTGCTTTGCGGGACGCTGGGAGGGGAGAGGGAGGTGTATGCTGGAGAGCTCCCCAGGGGCACGGCCTGGTTCTGCATCACTCACTGTCAGATCCTGAGAGCCTGGGGCTGGCCCAGCACGTGGCCACCGTTCCCTAAGAGTTGGATTTCATCCCTCAGTGCTGAAGGCAGGTGATAGAGCTTAGACAGACCCCCTGCGTCCTGTCTTCTTTATCTACAGCTTACTCATCCTTGCCCCTTTCACGTGCACCCGGCAGAGCAGGT a score=122317.0 s hg17.chr17_random 553011 1334 + 2618010 GTTCACTGAGCTTGAGCAAAATTCAAGCTAGAGCAGCTGATGGATCTTGAGGCCTAGATTCACTGTCAAAGTGTTTCTCAAACGGTGCTCTCCAGAACACCAAGGAAAACTCATTTACTCTATAAGTCTGAAAATCCCTGCCCACCGGTCTACCTTTGTGTATGAGCAATCAGCTCTACCATTCAGCCCAGGTGTGTGTTTGCTGGACCATGTggaggaagctgaagagacatgagctgaaggcagagggtgagtccaaggtgggatcttgggacaggtacgagaagttaggcaaaaatgggataattctagccttcataaccttagataatagttcacattattatttagttaatagaattgtacccacattaaatttctcaaatttttttaagaggtaaagtctcactctgtcacccaggctggagtgcagtggtgcaatcatggctcactgcttcctggaactcgtgggctccagcaatcctcctgcctcagcctcctgactaggtgggactataggcacacgccaccatgcctggctaatttctttgacttttctctagagaccgggtccacctaggtttcccaggctggtctcagacttctagactcaagtgaacctgaacctcccacctcgacctctcaaattgctgggattacaggtgtgagccaccacacccggcctaaatttcttatgtgccatgggactgcaaaacatcattattaggggcagctggatggaaggtataggaggacactatagtgccttttcaatatttctgtctaaaatctaaaagcatttcaacaggaaacatttatttcaaaaCGTGAAGGTAGTTATCCTTCCATGAGTTTAAAGTACAAAGGCAGGCTCACGGTGTCGTCAGAATTCAGAACGATGGTCGTGGGGCTTGGGGTGCTGGGAGGGGCTGGGCATGGTTGGCTTTGTGATCTGGGGTCTGGTGTGTTCCATCTCTGAATGTCTCTCAAGCTGCACTCTTTCTTAATACATATTCATAAGTTTAACCAAAAATAAAACGAGGACGCGAAGCTTGCTTGGGTTGTTAAGCCTAGGGAAATTATCCAGCCATGAGCCCTGGCCCAGATGCTTCTAGAAGCCTGGAGGGAACTGagaactttccaagtggaggccgcagaggcaaggccct-gaggtgggagcacactgctgttcgTCCCTAGCTCTGAAGGGGGTGCCCTGGTCGGAATCAGTGCTGG-------------------------------------------GTGCAGCGAAAGCCGATCTCACCCGCTCCGCAGGGTGTTCAGCCTGCCAGCAGGGGGCCAGCTGGTCCTCCTGGGATATGGCACGGACCCAGCAGCTC s panTro1.chr19 32758647 1378 - 82489036 GTTCACTGAGCTTGAGCAAAATTCAAGCTAGAGCAGCTGATGGATCTTGAGGCCTAGATTCACTGTCAAAGTGTTTCTCAAACGGTGCTCTCCAGAACACCAAGGAAAACTCATTTACTGTATAAGTTTGAAAATCCCTGCCCACCGGTCTACCTTTGTGTATGAGCAATCAGCTCTACCATTCAGCCCAGGTGTGTGTTTGCTGGACCATGTggaggaagctgaagagacatgagctgaaggcagagggtgagtccaaggtgggatcttgggacaggtacgagaagttaggcaaaaatgggataattctagccttcataaccttagataatagttcacattattatttagttaatagaattgtacccacattacatttcttaaatttttttaagagataaagtctcactctgtcacccaggctggagtgcagtggtgcaatcatggctcactgcttcctggaactcgtgggctccagcaatcctcctgcctcagcctcctgactaggtgggactataggcacacgccaccatgcctggctaatttctttgacttttctctagagaccgggtccacctaggtttcccaggctggtctcagacttctagactcaagtgaacctgaatctcccgcctcgacctctcaaattgctgggattacaggtatgagccaccacacccggcctaaatttcttatgtgccatgggactgcaaaacatcattattaggggcagctggatggaaggtataggaggacactatagtgccttttcaatatttctgtctaaaatctaaaatcatttcaacaggaaacatttatttcaaaaCGTGAAGGTGGTTATCCTTCCATGAGTTTAAAGTACAAAGGCAGGCTCACGGTGTCGTCAGAATTCAGAATGATGGTCGTGGGGCTGGGGGTGTTGGGAGGGGCTGGGCATGGTTGGCTTTGTGATCTGGGGTCTGGTGTGTTCCATCTCTGAATGTCTCTCGAGCTGCACTCTTTCTTAATACATTCTCATAAGTTTAACCAAAAATAAAACGAGGATGCGAAGCTTGCTTGGGTTGTTAAGCCTAGGGAAATTATCCAGCCATGAGCCCTGGCCCAGATGCTTCTAGAAGCCTGGAGGGAACTGAGGACTTTCCAAGTGGAGGCCGCAGAGGCAAGGCCCTCGAGGTGGGAGCACACTGCTGTTCGTCCCTAGCTCTGAAGGGGGTGCCCTGGTCGGAATCAGTGCTGGGTGCACTGCAGGGCCGGGAAGTCCATGCCCACGTTGTGGCTCAGTGCAGCGAAAGCCGATCTCACCCGCTCTGCAGGGTGTTCAGCCTGCCAGCAGGGGGCCAGCTGGTCCTCCTGGGATATGGCACGGACCCAGCAGCTC a score=18932.0 s hg17.chr17_random 554345 206 + 2618010 TGTCTGAAATCATAATGGCGGAACCAAGGCCCCTCTACGTCCAGGTCCGTTGGGAGGCGGGGCATGGAGTTCCACTGCAGGAATCTCCAGGAACCCTGAGGTCCTCCCTGAGCCAGGGCCGGGCTGGGCACACCCTGAGTGCCCACAGGGTAGGTGTCTTCCCGGACAGCCCCACCAGGACAGGGTGTGGAAGAACGAGGTGCCCG s panTro1.chr19 49609322 206 + 82489036 TGTCTGAAATCATAACGGCGGAACCAAGGGTCCCCTACGTCCAGGTCCGTTGGGAGGTGGGGCATGGAGTTCCACTGCAGGAATCTCCAGGAACCCTGAGGTCCTCCCTGAGCCAGGGCCGGGCTGGGCACACCCTGAGTGCCCACAGGGTAGGTGTCTTCTCAGACAGCCCCACCAGGACAGGGTGTGGAAGAACGAGGTGCCCG a score=5781.0 s hg17.chr17_random 554551 69 + 2618010 TGGCGGGGAAGCTGACCAAATGGGCCGCGGGAACC-GGGCTGGT-GGGCCTGGAGGGGCCTG-CCTGTCCCC s panTro1.chr19 49609528 71 + 82489036 TGGCAGGGAAGCTGACCCAATGGGGCGCGGGAATCGGGGCTGGTGGGGCCTGGA-GGGCCTGCCCTGTCCCC s canFam1.chr15 11473513 65 + 67237905 TGGCCGGGAGGGGGTCC----GGGCGGCTCAGGCT-GGGTGGCT-GGGCCCGGGGAGGCCGG-CTCCTCCAC a score=22831.0 s hg17.chr17_random 554620 196 + 2618010 CTTGCAGAGGGTCTTCCCGCCACGTGAAGCCGGCACAGGCCTGGATGCCGACGACCCTTG------------------------------CTCGGGTTTGGCTGAAAGGAAAACAGACGCGGTCAGCATCTCCAGTGAGCCCACGCAGGCCTTTCCGGGCTGGGCCCCACCTGCCTGCATCTC-GGAGTCCTCGGGGTCCCTGTGTGGCCCCCGTGGCCTGACACCG s panTro1.chr19_random 46799106 197 + 57627672 CTTGCAGAGGGTCTTCCCACCATGTGAAGCCGGCACAGGCCTGGGTGCCAAGGACCCTTG------------------------------CTCGGGTTTGGCTGAAAGGAAAACAGACGTGGTCAGCATCTCCAGTGAGCCCATGCAGGCCTTTCCGGGCTGGGCCCCACCTGCCTGCATCTCTGGAGTCCTTGGGGTCTCTGTGTGGCCCCTGTGGTCTGACACTG s canFam1.chr15 11473578 206 + 67237905 CCTGGGGGGTGTCTCAGAGGCCGGAGAAGAGAGGAGAGGCCCGGACACCGGGGACACTTGCTCCAGGCCCAGGGGCCTCGTGGGGAACTCCTCAGGTCCTGCTGGAAAG-AGGCCGACGGGGTCAGCGTCTCCAGC-AGGCTGTGTGTCCCCCACTGG---GGGCCCCG---------------GGGGTCCTCACGACTCCCACGTGGCCCCC-CAGCCTGACCCTG a score=13734.0 s hg17.chr17_random 554816 154 + 2618010 AGGACACGCCTGTAGTCTGCTGATCCCAGAGGGAGGGGTGCATGCTGCCTGGCGTGGGGAAGCTGTCGTGGCATGGCGGGTGGCTCCTGGGACTGCCCCCAGGGTTCAGACTGGCTGGGGGCTTCCTGCCACACACCTTCGTCCCAGGGCTGTT s panTro1.chr19_random 46799303 154 + 57627672 ACGACACGCCTGTAGTCTGCTGATCCCAGAGGGAGGGGTGTGTGCTGCCTGGCATGGGGAAGCCGTTGGGGCATGGTGGGTGGCTCCTGGGACTGCCCCCAGGGTTCAGACTGGCTGGGGGCTTCCTGCCACACACCTTCGTCCCAGGGCTGTT a score=7390.0 s hg17.chr17_random 555096 78 + 2618010 GGCACTGCAGGGCAAGGAAGGTCCCTGAGCCAGGGTCTCCCTATGCCTCCTTACCCCGTCAATCAATATCCGGATGAG s panTro1.chr19 35046016 78 + 82489036 GGCACTGCAGGGCAAGGAGGGTCCCTGAGCCAGGGTCTCCCTATGCCTCCTTACCCCGTCAATCAATATCCGGATGAG a score=3908.0 s hg17.chr17_random 555174 69 + 2618010 GC------------AGCCTAACGGGGAACACTGCCCACATAGATCTTTCTTGTCCTGATGGAAGCAACAGAGGTGCTCAGG s panTro1.chr1 213346253 81 - 229575298 GCTCCAAAGCAACCAACCTAATGAGGAACCCTGAACGCATAGCCCTTCCTTGTCCTGATGGGAGGAACAGAGGTGCTCAGG a score=22765.0 s hg17.chr17_random 555243 257 + 2618010 CCACTGGGCTGCCCTAAAAACCTCCCTCTTCCAGGGCCTCTGAAGACCCTTCCCCTAGTGCAGAACACTGGGCGGTGTCCAGAGCTCCCCACAACACTGT-CACCTTCCCACACTCCCGGTGGACACACTGCCCTTTGCCCTGCTCTGTGGGAGCTGGGCCCCCATCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACCAACTCCCAGCCCATGGAGAACCCGACGTCCCAGGTCAGGCCCTGGCTGGGACT s panTro1.chr19 20735610 258 + 82489036 CCCCTGGGCTGCCCTAAAAACCTCCATCTTCCAGGGCCTCTGAAGACCCTTCCCCTAGTGCAGAACACTGGGCGGTGTCCAGAGCTCCCCACAACACTGTTCCCCTTCCCACACTCTCGGTGGACACACTGACCTTTGACTTGCTCTGCGGGAGCTGGGCCCCCATCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACAAACTCCCAGCCCATGGAGAACCCGACGTCCCAGGTCAGGCCCTGGCTGGGACT a score=15364.0 s hg17.chr17_random 555500 152 + 2618010 CAGCCAGTCACCAGCCCCACGAGGGGCTCCAGCCCCCCTGCTCCTACAGCCCCACG----GGAGGCAGGGCCTCTGGGAAGAGCTGAGGGGACCATAAACTCACCTGATGCCCCATGGTCTTGGGTTGTGACGTGGCTACCACATGCTCCTGTTGG s panTro1.chr19 20735868 152 + 82489036 CCGCCAGTCACCAGTCCCACGAGGGTCTCCAGTCCCCCTGCTCCTACAGCCCCACG----GGAGGCAAGGCCTCTGAGAAGAGCCGAGGGGACAATAAACTCACCTGATGCCACATGGTCTTGGGTTGTGACTTGGGCACCACATGCTCCTGTTGG s canFam1.chr27 38309316 141 + 49087461 CAGACTCTTGCCAGCTGCAGAAGGGTCTGCACACCCCCTACCCCT---GCCCCGGGCCATGGGGACAGTGCCTCTGGGGTG------------CTTCTACTTACCATGTGCTTCTTAAGCTTTGGGAGTGCTTTTCCTTGAATGTGGCTATGATAG a score=10398.0 s hg17.chr17_random 555652 85 + 2618010 TCTTGGAGCCCC-------TGGACGGTCCTGCCATTTGGGCTGTGAAATCCTGAGAAGCCCCCAGCCCATCATGAAATCAGAGCCTTCCCCC s panTro1.chr19_random 9004761 85 - 57627672 TCTTGGAGCCCC-------TGGATGGTCCCGCCATTTGGGCTGTGTAATGGTGAGAAGCCCCCAGCCCATCATGAAATCAGAGCCTTCCCCC s canFam1.chr27 38309457 84 + 49087461 GCCTGGAACCTCAGCAGTTTGGGGAACCC-------TGGAATGAAGAAGCCTGAGAAGGCCCAGGCCTCCCA-ACAATCAGAGTCTTCTCCC a score=9949.0 s hg17.chr17_random 555737 103 + 2618010 AAGATGTGGAGCCATCAGCTGCAAGAGCTGGGCAGCTGGAGAGGCCCCCAAACCCCAAGGCCTCCCACCCTCCCATCTGGTGACCCCAACATGCGGCCTTTAC s panTro1.chr19_random 9004846 103 - 57627672 AAGATGTGGAGCCATCAGCTGCAAGAGCTGGGCAGCTGGAGAGGCCCCCAAACCCCAAGGCCTCCCACCCTCCCATCTGGTGACCCCAACATGCGGCCTTTAC a score=36370.0 s hg17.chr17_random 555840 358 + 2618010 CCTGGGGAGGTGGGGCGGGAACA-----TTCCCTGGAGCCTGGCTGGAGGTTCCCCTG----------GAGGCCTCCTGGGCCA--------------------GGGTGCAAAAAGGGCAAGCCTGACTTTCAGGCCACGACAGGGTGG---CCGGAACTGGGTGGGCGC--TGGGCTTCCCAGTCATCTCCTGGTAGTGGGGTCGGGCCA-GGGAACAGGGGATGGGGAGAT----GCTGCCACCTGGGCTTGGTCGGCCCATTCGTGGGCA-----CCGATGGCAGCAGGAGCCCGGGCAGCTGGAGGGCAGGAGGACTCTCAGGGAGGGGAGAGTCAGCTGCACAGAATCAGAGCCGGAGGGCGTGGCTCCAGGACACAGAGGGTGGCCACGGGGAGGATGAGAT s panTro1.chr19_random 9004949 358 - 57627672 CCTGGGGAGGTGGGGCGGGAACA-----TTCCCTGGAGCCTGGCTGGAGGTTCCCCTG----------GAGGCCTCCTGGGCCA--------------------GGGTGCAAAAAGGGCAAGCCTGACTTTCAGGCCACCACAGGGCGG---CCGGAACTGGGTGGGTGC--TGGGCTTCCTGGTCATCTCCTGGTAGTGGGGTCGGGCCA-GGGAACAGGGGATGGGGAGAT----GCTGCCACCTGGGCTTGGTCGGCCCATTCGTGGGCA-----CCGATGGCAGCAGGAGCCCGGGCAGCTGGAGGGCAGGAGGACTCTCAGGGAGGGGAGAGTCAGCTGCACAGAATCAGAGCCGGAGGGCGTGGCTCCAGGACACAGAGGGTGGCCACGGGGAGGATGAGAT s canFam1.chr27 38309665 399 + 49087461 CCTGAGGAGACAGGGGCAGAGGACCCACCTCACAGAGACCCAGATGGGTTGTGCCCTGTGCTGAGGACAAGACCTGTGTGACCCAGCACCCTCTTTTCTGCAGTGGCTGTGGTGGGAGCAAG--GGGTCCCCAG--CACTAAGGGACAGCCTCCAGAGTGGGGCAGCCGATGTGTGCTCAACCATCATCTCCTGTGCATGGAGTTAGGCTGTGGGCACACAGGAGTGGGAGACCAGAGCTGCCACCAGGACGTCGTCTGGCTGTGAGCTTGCAGAATGCCTGGGTGGGCATACAGTCAGCCAGACAGGAGACTGAAGGACCACCTGGGATACAAGAATGGTCCACAAATGGTGGGA-CTGTTGGCCATGGGTACAGGAACTTGAAGGCAACC-TGGGGAGGAAGT--- a score=6989.0 s hg17.chr17_random 556198 79 + 2618010 GCCCTCTGCTGATGGGGATGACAGGCGTCTGATTTGGGCTTTGGGGGTCTGCCGTGGACTCCTGTGG-GACCCTCAGCAG s panTro1.chr19_random 9005307 79 - 57627672 GCCCTCTGCTGATGGGGATGAGAGGTGTCTGATTTGGGCTTTGGGGGTCAGCCGTGGACTCCTGTGG-GACCCTCAGCAG s rn3.chr1 66587785 57 - 268121971 GTTCTCTGCTGATGGGGACACAA-------------------GGGGAT---CCTTTGACATTCCCGA-GACCATCTACAG s canFam1.chr27 38310064 63 + 49087461 GTCTTATGCCAGTTCAGAGG---------TGGACTGGGT---GGGGGT---CCCTGCCTGCCTGGGGTGACTCTC--CTG a score=-325.0 s hg17.chr17_random 556277 117 + 2618010 AGACATTCTAAAGTCTCCCAACA---AGCTGGCGACACAAGGAGGGTGCCTTGGCTGAAAGCTGTGATCACCTGGCCAGGGTGGCCATCCCCAGGTCTGGCTGCAGGAGGTCCCCGGGGC s panTro1.chr19 56378549 120 - 82489036 AGACATCCTAAAGGCTCCCAACAGTTAGCTGGTGACACAAGGAAGGTGTCTTCACTGAAAGCTGAGATCACCTGGCCAGGGTGGCTCTCCTCGGGTCTGATTGCATGAGGCCCCGGGAGC s rn3.chr1 66587843 96 - 268121971 AGACAGTCCAGTGGTTCAGAACA--------GGGA---AGGAAAGGTG------CTATAAATTGTCACTAGTTAGC-----TGGCTGTCACCCAGCCTAGCT--ATTTTGTGCCGTGAGA s canFam1.chr27 38310127 51 + 49087461 -----------------------------------AGCTCCAAGGGTGACTCTCCTGAG-----------------------------CTCCAAGTCCAGTC-----CAGTGGCCTGGAC a score=0.0 s hg17.chr17_random 556394 9 + 2618010 AGCTGTTCA a score=902.0 s hg17.chr17_random 556394 4 + 2618010 AGCT s panTro1.chr19 56378669 4 - 82489036 AGCT s rn3.chr1 66587939 4 - 268121971 GGCT a score=818.0 s hg17.chr17_random 556398 5 + 2618010 GTTCA s panTro1.chr19 56378673 5 - 82489036 GTCCA s mm5.chr2 175314005 5 - 181686250 GCTTT s rn3.chr1 66587943 5 - 268121971 GTCTA a score=1422.0 s hg17.chr17_random 556403 2 + 2618010 CT s panTro1.chr19 56378678 2 - 82489036 CC s mm5.chr2 175314010 2 - 181686250 CT s rn3.chr1 66587948 2 - 268121971 CT s fr1.chrUn 103987944 2 + 349519338 CT a score=191.0 s hg17.chr17_random 556403 2 + 2618010 CT s fr1.chrUn 103987944 2 + 349519338 CT a score=108197.0 s hg17.chr17_random 556405 129 + 2618010 TACCCTGCAGGGAGTGCCTCTCACTGGCCAGCAGCTGCACCAGTGCCCAGAATGCATCCTCCTCAGGAAGATAGAGGAGGAACAAGGCGGCGATGTGGCTCAGGTCCCTGCAGTAGCCCACCTCCTGCA s panTro1.chr19 56378680 129 - 82489036 TACCCTGCAGGGAGAGCCTCTCACTGGCCAGCAGCTGCGCCAGTGCCTAGAAGGCATCCTCCTCAGGCAGATAAAGGAAGAACAAGGCAGTGACATGGCCCAGGTCCCTGCAGTAGCCCACCTCCTGCA s mm5.chr2 175314012 129 - 181686250 TACCGTGCATTGCGTGCTTGGGGCCCGAGAAGAGCTTGACCAGGGCCCAGAAGGCGTCTTCCTCGTTCATGTACATGAGGAGCAAGGCCGTGATCTGACTCATCCCTTGGCAGTACCCGACTTCCTAAG s rn3.chr1 66587950 128 - 268121971 TACCTTGGATAGTGTGCTGCTTATTGATCGGCTACTGGAACAGTACCCAAATAGCATCTTCCTTATTGAGGACCATTGTCAGGACAGAAGTAACCTGGCCCATGCCTAGGCAGTGGCTT-CTGCTTTCA s canFam1.chr27 38310178 129 + 49087461 TACCATACATGGCATGCCTCTCGTTGGTTATCAGCTAGGCCAACATCCAGAAAGCATCCTCCTCACTCAAGAACATCAGCAGGATGGCCACAATCTGGTTCCTGCCCCGGCAGTAGCCCACCTCCTGCA s fr1.chrUn 103987946 129 + 349519338 TACCGTGCATGGCGTGCTTCTGCCCGGACAGCAGTTTGACCAGAGCCCAGAAGGCGTCTTCTTCGTTCATATAGATGAGCAGCAGGGCCGTGATCTGACTCATCCCCTGACAGTAGCCCACCTCCTGCA s danRer1.chr4 14513882 129 - 30025136 TACCGTGCATGGTGTGTCTCTGTCCAGACAGCAGTTTAACAAGCGCCCAGAAAGCATCTTCCTCATTCATATAGATGAGTAACAGCGCAGTGATCTGACTCATGCCCTGACAATAGCCCACCTCCTACA a score=5929.0 s hg17.chr17_random 556534 9 + 2618010 ---AGAGCCAGA s panTro1.chr19 56378809 9 - 82489036 ---AGAGCCAGA s mm5.chr2 175314141 9 - 181686250 ---AAAGGGAGA s rn3.chr1 66588078 9 - 268121971 ---GGAATCAAA s canFam1.chr27 38310307 9 + 49087461 ---AGAGCCACA s fr1.chrUn 103988075 12 + 349519338 GCCAGAGTCAGA a score=2928.0 s hg17.chr17_random 556543 39 + 2618010 GTCACCATGGAAGGACATGACCTGGGAGGGCTGAGGTCA s panTro1.chr19 56378818 39 - 82489036 GTCACCGTGGAAGGACATCACCTGGGAGGGCTGAGGTCA s rn3.chr1 66588087 39 - 268121971 ATCATTATGGGAGGAGATCACCCAAGATGGCTGAGGTCT s canFam1.chr27 38310316 29 + 49087461 -CTTACGTGGAAGGTGGCCAT---------CTAAAGTCG s fr1.chrUn 103988087 39 + 349519338 CTCGGTGCTACAATCTAGACCCTCAGACAGATGCTGCAC a score=861.0 s hg17.chr17_random 556582 8 + 2618010 -----CCTGGGAG--- s panTro1.chr19 56378857 8 - 82489036 -----CCCGGGAG--- s rn3.chr1 66588126 8 - 268121971 -----CCTGGGGG--- s fr1.chrUn 103988126 16 + 349519338 CCCGACCGGGCAGAGG a score=-460.0 s hg17.chr17_random 556582 20 + 2618010 CCTG--------GGAGGACTCA---TGTCAT--- s fr1.chrUn 103988126 34 + 349519338 CCCGACCGGGCAGAGGAACTCACCGTGTTGTAGA a score=683.0 s hg17.chr17_random 556590 12 + 2618010 GACTCA---TGTCAT--- s panTro1.chr19 56378865 12 - 82489036 GACTCA---TGTCAT--- s fr1.chrUn 103988142 18 + 349519338 AACTCACCGTGTTGTAGA a score=2310.0 s hg17.chr17_random 556602 20 + 2618010 TGGAG---AGGGCAGAGGTGACT- s panTro1.chr19 56378877 20 - 82489036 CAGAG---AGGGCAGAGGTGACT- s canFam1.chr27 38310345 23 + 49087461 TGGAGTTTGGAGTAGTGGGAACT- s fr1.chrUn 103988160 21 + 349519338 TGGAG---TAGGCCGTGAGGACGT a score=2808.0 s hg17.chr17_random 556622 8 + 2618010 GGAGAGGC s panTro1.chr19 56378897 8 - 82489036 GGGGAGGC s mm5.chr8 83449272 8 - 128688707 GGGGGAGC s fr1.chrUn 103988181 8 + 349519338 GGAAGAGC a score=398.0 s hg17.chr17_random 556622 8 + 2618010 GGAGAGGC s fr1.chrUn 103988181 8 + 349519338 GGAAGAGC a score=-2604.0 s hg17.chr17_random 556630 44 + 2618010 TTCCTCTGAAGGAGAGGCTTCCTCTGAAAAAGAGGCTTCCTCAG-------- s panTro1.chr19 56378905 26 - 82489036 TTCCTCTGAAG------------------AAGAGGCTTCCTCAA-------- s mm5.chr8 83449280 44 - 128688707 TTCCTCAGCAGGGGGAGCTTCCTCTGCAAGGGGAGCTTCCTCAG-------- s canFam1.chr27 38310368 42 + 49087461 TTCCTCCCTGC--CCAGTTACTAATTAGTAGTAGGGTCCTTCAG-------- s fr1.chrUn 103988189 40 + 349519338 ------------GCCTGCTGTCTGCCGAAACAGAGAGCAATCAGTGTCACTT a score=100.0 s hg17.chr17_random 556674 1 + 2618010 G s fr1.chrUn 103988229 1 + 349519338 G a score=100.0 s hg17.chr17_random 556674 1 + 2618010 G s panTro1.chr19 56378931 1 - 82489036 G a score=100.0 s hg17.chr17_random 556674 1 + 2618010 G s canFam1.chr27 38310410 1 + 49087461 G a score=2934.0 s hg17.chr17_random 556675 53 + 2618010 ATGCACATTCA--TTTCA----TGACAAGAGCCA---AGTCCATCAGGCACTTCAGCACCTT s panTro1.chr19_random 16293366 53 - 57627672 ATGCACATTCA--TTTCA----TGACAAGAGCCA---AGTCCATCGGGCACTTCAGCACCTT s canFam1.chr27 38310411 43 + 49087461 ATCCAGACCCAAGTTTTA----TGACAACAGCGATGCAGTC--TCAGGC------------- s fr1.chrUn 103988230 52 + 349519338 GTAAACATATA--GGTCAAGTTTGACAGCA-------GGTCAATAATGTATTTC-GCTCCTT a score=42758.0 s hg17.chr17_random 556728 429 + 2618010 GTCCAAAATGTCTGCTGATAGCACCATCCTGTGTGCGATGCTGCCAAGCTCCTGGGCTTTGGGGCAGCCCCAGGAGGAGGGCGTCATTTCTTGTTCTGAGAAGTGGTGGTCAGGCCCAGGTGACACCAGGAGTCCGGGCCCTGACTCCTTTGTGTCTCAGCTTGACCCCTTGAGACCACCCCCTTCCTTGGAGGTTTATGCCAGCGGTGAGCTGACATCC-TACCTCCTATATCCTGGTGGGTCACAAATACTAACTTTAAAAGAAGCAACGACACCCCCACCAGACACCCACTCCTGTCAATATGGAAATATGGCCCGGGAACCTCACTGCCGGGAATACTCACCGGGTTATACTCCTCATATGCCAGGAGGATGTGGAGTAGTTCCCGCTGCCTAGGAAACAG---AGAAAGGGGGCTTTGGTTTGTTTTG s panTro1.chr19_random 16293419 429 - 57627672 GTCCAAAATGTCTGCTGATAGCACCATCCTGTGTGCGATGCTGCCAAGCTCCTGGGCTTTGGGGCAGCCCCAGGAGGAGGGCGTCATTTCTTGTTCTGAGAAGTGGTGGTCAGGCCCAGGTGACACCAGGAGTCCAGGCCCTGACTCCTTTGTGTATCAGCTTGACCCCTTGAGACCACCCCCTTCCTTGGAGGTTTATGCCAGCGGTGAGCTGACATCC-TACCTCCTATATCCTGGTGGGTCACAAATACTAACTTTAAAAGAAGCAACGACACCCCCACCAGACACCCACTCCTGTGAATATGGAAATATGGCCCGGGAACCTCACTGCCGGGAATACTCACCGGGTTATACTCCTCATACGCCAGGAGGATGTGGAGTAGTTCCCGCTGCCTAGGAAACAG---AGAAAGGGGGCTTTGGTTTGTTTTG s canFam1.chr27 38310454 285 + 49087461 ------------------------------------------------CTCAAGGACTCAGGGGCTGTCCC----------------------TCCCCAGCAGTG------AGGTCT------------GCACCCCAGCCCCTCCTCCTTAGT--------------CTTAGAG---AGCCCTTCTCTTGCCTCTCTGAGACATTGG-GAGCTGGTGTCCTTAACTAGTACATCATGTTTGGTCATAAATGCTCA---------AGACAATGATACCC-----------------------AAGGGGTAACCT-GCCTGG---------TGACAGGGATACTCACAGTGTTGTACATGGAATAGACCGAGAGAACATGGAACAGGGTTTGCTGCCTAGGAAAGGGGACAGGAAGGTGATTTTGCTCTTGTCTG a score=10908.0 s hg17.chr17_random 557157 122 + 2618010 TGCAGATG-TTGTTAATTTCACTTTGTCTACAAAGCCTAACAGCAAATCCCATTTCAGGTTCAGATGTTTCACCAGATAAGCAGTGAGCTCTTCAGGGCCTGAGACTCTTGAAGAAATGTTTC s panTro1.chr19_random 16293848 123 - 57627672 TGCAGATGCTTGTTAATTTCACTTTGTCTACAAAGCCTAACAGCAAATCCCATTTCAGGTTCAGATGATTCACCAGATAAGCAGTGAGCTCTTCAGGGCCTGAGACTCTTGAAGAAATGTTTC a score=76611.0 s hg17.chr17_random 557279 692 + 2618010 AGTAAAATCCACAT-CTGTGACATGCAAATAGCCCAGTTGTACAGTGACTTGCCTGATCCTTTTCACTctgaatgatttttttttt-----cagtttgcacacacgccagttcagtctgtgggtgtacagttcctccacggttccaaaccgatgtgcagagtctcccgg---ccaccgctccagcccctcctggggcgactccttcatcctccaagtctccagggtggcccctatgcaaccagcctctccccgatccgtcagcccctggccacccagactgcttctcagtccctgtggtttggccttttccaga----------------atggcctaggaatgggaatcctactgtggtagcttattgggtctggcttctgtccctcagcaaaatgcatctaggatccacccacgttcgtgcgggcatcaccggctcgttcccttttctcactgggtcttccgtttgaagggaggaccagc-cttgctctccccatccccgtgttgaaggccgtccccgaaggctccgtgtgtgagtgacgaggagtcaagcagtgaacctggcatgctggtttcatgtggatgtcagtttgcaaatcagtgggttcaatatctgtga-cactttggggatgtgtggttcaagtccatcgagctttgtgagccactgcccaacgggctgccaacgtggctgtg----ccatgtcatgtt-cccagcggacctg s panTro1.chr19_random 16293971 697 - 57627672 AGTAAAATCCACAT-CTGTGACATGCAAATAGCCCAGTTGTACAGTGACTCGCCTGATCCTTTTCACTCTGAATGATTTTTTTTTTTTTTTCAGTTTGCACACACGCCAGTTCAGTCTGTGGGTGTACAGTTCCTCCACGGTTCCAAACCAATGTGCAGAGTCTCCCGG---CCACCGCTCCAGCCCCTCCTGGGGCGATTCCTTCATCCTCCAAGTCTCCAGGGTGGCCcctatgcacccagcctctccccgatgcgtcagcccctggccacccagactgcttctcagtccctgtggtttggccttttccaga----------------atggcctaggaatgggaatcctactgtggtagcttattgggtctggcttctgtccctcagcaaaatgcatctaggatccacccacgttcgtgcgggcatccctggctcgttcccttttctcactgggtcttccgtttgaagggaggaccagc-cttgctctccccattcccgtgttgaaggccgtccccgaaggctccgtgtgtgagtgacgaggagtcaagcagtgaacctggcatgcaggtttcatgtggatgtcagtttccaaatcagtgggttcaatatctgtga-cacttcggggatgcgtggttcaagtccatcgagctttgtgagccactgcccaactggctgccaacgtggctgtg----ccatgtcatgtt-cccagcagacctg s canFam1.chr27 38310855 605 + 49087461 GATCAGGTCTACACACAATAAGATGCAGATA-CTCAGT------GTGA--TGGATGTTTATTTTTA-----------TTTTTTTTT-----CTATTTGTCTCCATTAAAGCTCACACTGTGGG----------------------------ATGTGCAG---CTCCTGGATTTTACCCATCCAGCCCC----AGAGCAGCTGCTCCACCCT--GAGCCT---------CCCCTTTGTAGCTAGGCATTCCCCTCTGCACCCGCTTGTGGTAGCCCCTGATGCTTCTCC-TCTTCATGATCTGGCTtgttccagatgtccagatgttccagatgtCCTGTGAAT-GCAACCATAC------------ACGAGTctggcttccttcaccaagca-----catc------acacccatggcatcgagcgcatggatagctcattcctgaattgta--------tctgtttt-atggattaccagtgtttgttc-------------atctaagagcatcttgattgtctccagatttgagccattgtgaataaagcagggaacat-ccatgcaggttttatacagataaatgttttcaaatcatttgggtcaatatctatgagcaccactggggcctatcacgaggctccattcagctttgtaagaagccaccagattgccttccagcatggctgcaTGACCCAGGTCCTGCTGCCCCACGGGCATG a score=26640.0 s hg17.chr17_random 557971 283 + 2618010 gatgagagtttccaggacccctaattctcccagcatttggtgctgtcactgttGCCTGGCGGGGGCTCATGGGCCCTCTATCCTGCCACCCTCCCGTGGGTCCTACCATGGGTCCCCATGGGTCAGGGAGAGCACCCTTCACCATTGTGCATGATTTTGTTTGCTGCCTTCCATCTCCTCAGGATCCTCCTGGGTTCTGGCCCCACATGTTCCAGTCTGGCCCAGGGCTTGGAACCAGGGAGGTGCTCGGTTCATGGTGCCGGCTGCTCCCTGGGCCGGGAGA s panTro1.chr19_random 16294668 282 - 57627672 gatgagagtttccaggacccctaattctcccagcatttggtgctgtcaCTGTTGCCTGG-GGGGGCTCATGGGCCCTCTATCCTGCCACCCTCCCGTGGGTCCTACCATGGGTCCCCATGGGTCAGGGAGAGCACCTTTCACCATTGTGCATGATTTTGTTTGCTGCCTTCCATCTCCTCAGGATCCTCCTGGGTTCTGGCCCCACATGTTCCAGTCTGGCCCAGGGCTTGGAACCAGGGAGGTGCTCGGTTCATGGTGCCGGCTGCTCCCTGGGCCGGGAGA a score=35244.0 s hg17.chr17_random 558254 315 + 2618010 GCTCTTGGCAGCTGTGTCATCCCT---CCTGGGTGACCCTGGCTTCTGCTCCGGGGAAGCCCCCATCCCTCTCATTCACCCCATCTCTGCTGGGACCCTGTGGCTCCC-GTAGGCTTACTTGGTTCCGTATCGATCCCTGAAG-AATATATGCTTCCTTAATGTCCCGCTTACGTCCCGGTCGATGCGCTGGATGTGCTCAGATGACCTCTTGCCCTTCTCCTTCATGATCTGTAGGGCAGGGCCAAGAGGAGGAAGCAGTCTCAGA---ACAGATGGAAGACTCCCTGCCCCCAGTGGCAGTCAGCCCACAGTCAGCAGTTC- s panTro1.chr19_random 16294950 317 - 57627672 GCTCTTGGCAGCTGTGTCATCCCT---CCTGGGTGACCCTGGCTTCTGCTCCGGGGAAGCCCCCATCCCTCTCATTCACCCCATCTCTGCTGGGACCCTGTGGCTCCCCATAGACTTACTTGGTTCCGTATCGATCCCTGAAGGAATATATGCCTCCTTAATGTCCCGCTTATGTCCAGGTCCATCTGCTGGATGTGTTCAGATGACCTCTTGCCCTTCTCCTTCATGATCTGTAGGGCAGGGCCAAGAGGAGGAAGCAGTCTCAGA---ACAGATGGAAGACTCCCTGCCCCCAGTGGCAGTCAGCCCACAGTCAGCACTTC- s canFam1.chrUn 13397322 290 - 91062872 GTTGTTTGCTGCCGTCGCTCCCCCCGGCCTCGGAGACCCC-GTGTCCCCTGCACAGAAGCCCCCGGGCCTCTCCCGGGCCCCC---------AAACCCCGCAGGCCCA-GCAGCCTCACCCGACCCCGTAGCCCTCCCAGAAC-ATGGTGTGACTGCGGAACATCCCGTTGACGTCCAGGTCAATCTGCATGATGTCCCGGGAGGAGACCAGGGCCTCCTCCTTCATTTCCTGCGGGGAGACCCTGGGAGGAGGAGCCGGCGTCAGGGACACAGA---------CCCCGACCT------------GTCAACAG-CTGCCGTCCT a score=24717.0 s hg17.chr17_random 558569 234 + 2618010 GGGAAGGAAGGACAGAAGGAAGGTTTCCTTCTGCAGAAAGCTGCATTTTGGCTTGTTACTGAAGCCAGGGAGGGTCACCAGAGCTGAGTTTGTCTGTGGTGACTGTGTCACCATCTGTGCCCAGGGTGTTCATCTGACCTTCACCCCCAGATCCCCAGGGTGGTCTTGACGTTCCCTCCAGCTGGAGACCTGGGCCCC-GACACGGCCTGTCCTGTTTGTTGTGCTCTGGCTGAG s panTro1.chr19_random 16295267 235 - 57627672 GGGAAGGAAGGACAGAAGGAAGGTTTCCTTCTGCAGAAAGCTGCATTTTGGCTTGTTACTGAAGCCAGGGAGGGTCACCAGAGCTGAGTTTGTCTGTGGTGACTGTGTCACCATCTGTGCCCAGGGTGTTCATCTGACCTTCACCCCCAGCTCCCCAGGGTGGTCTTGACGTTCCCTCCAGCTGGAGACCTGGGCCCCTGACACGGCCTGTCCTGTTTGTTGTCCTCTGGCTGAG s canFam1.chr1 102013011 174 + 124897793 GGGACAGTGGGACTGAGGTGGGG------GCAGCAGAGAGGTG------GGCGGGGCACTTGGGTCAGAGAGG--CACCAG--------------GAGATGCTGGGGCCACCCTGGGTCCCCAGG-----CAGCTGACCTCCCCCCTC---CCCCCAG------------GTTCCCCTCTGCT-------------CCTGTCCAGGCCTTCCCTGTGGGCCATGTGTCTGCCGGG a score=3478.0 s hg17.chr17_random 558803 20 + 2618010 -----------CGTACCTGGTATCTTCCGGG s panTro1.chr19_random 16309185 20 - 57627672 -----------CGTACCTGGTATCTTCCGGG s canFam1.chr1 102013185 31 + 124897793 AGTGGAAGGGCCCTACTTGGTATTTCCCTGG a score=55236.0 s hg17.chr17_random 558823 533 + 2618010 GTTTTTCAACTTCATTTCCTCAGTGTTCAGGAGGACTGACCACATCGGGCCCCGGATGTTCATGGGCATTCCCTTGT--ACGCTCGATCTATG-AGCTGT-GGGCAGAAAACAAT-CTGGTGTCACAGGCCACGGGGTGACCCCAGTGAG--GACCAGAGCCTGGGGATTCTGGAAATTGTCGG-TTTTGGCCCCATGATTCCTCAGTAGAGGTGAGATCAAGCTGGGACAGGGTCTCCCTTCCCAGGACTGAAAGAGTGGATGGACACTCAGAGTCGAAACTCTGATCTGAACCTTTTCCTTCCTTCAGGTCCCCAGGGCATCCCTAGCCTTGAGCTCCGGGTAGTCCCAGCCCTAGATTCAGATTCCCTCCCTGCAAGGTGACGCTTGCACGAATAGGCAGGAAATCTGGCGAC--CAGGCCTGCAGTCCTCTGGGCGAGGACAGTGTGCCGCCCACCCTCTGAGAGGCTGATGGTGCCAGGCCACAGCCATGGGTGCCTGTCCCCTGTCTCTGCAGAGAGTGCTTCCTCCCTCCACACGT------- s panTro1.chr19_random 16309205 535 - 57627672 GTTTTTCAACTTCATTTCCTCAATGTTCAGGAGGACTGACCACATCGGGCCCCGGATGTTCATGGGAATTCCCTGGT--ACGCTCGATCTATG-AGCTGT-GGGCAGAAAACAAT-CTGGTGTCACAGGCCACGGGGTGACCCCAGTGAG--GACCAGAGCCCGGGGATTCTGGAAATTGTCGG-TTTTGGCCCCATGATTCCTCAGTAGAGGTGAGATCAAGCTGGGACAGGGTCTCCCTTCCCAGGACTGAAAGAGTGGATGGACACTCAGAGTTGAAACTCTGATCTGAACCTTTTCCTTCCTTCAGGTCACCAGGGCATCCCTAGCCTTGAGCTCCGGGTGGTCCCAGCCCTAGATTCAGATTCCCTCCCAGCAAGGTGACGCTTGCACAAATAGGCAGGAAATCTGGCGACTTCAGGCCTGCAGTCCTCTGGGCGAGGACAGTGTGCCACCCACCCTCTGAGAGGCTGACGGTGCCAGGCCACAGCCATGGGTGCCTGTCCCCTGTCTCTGCAGAGAGTGCTTCCTCCCTCCACACAT------- s canFam1.chr27 38313129 444 + 49087461 GTTCTCTGACTTTACCTTCTCAGTGTCCAGCAGGCAGGACTTAACCTGACCTCGCACCTGCAGAGGGACCCCTTTGTAGATGCT---TCCATGCATCTATAGGAAAGAAGGCAGTGCTGGTGAGACAGGCC-CAGGGTGGTATCAGAGAGCCGA-TGGAGCATGAGGCATCTAGAAATTTCTGGCCTTCTGCTCCATGGTGTTACTGGAGAGGCT-GGTCTACCTAGTACTGGGCCTTGTCTCCCACAA--GGACGAGGGGA-------------CTGTGGCTCTTACCTGATGC-------TACCTCTGGTGCC--------CCTTGGGCCTGGG----GGGTGGCTTTGGCTCTGGCATCAGACTCC--CCAGGCAAGGGGATACTTCTGGGGGTGGAGGGAGGGTGTGTTGGG--CAG-----------------------CAATGGGCTGCCCTCCCTAT---------------------CCCCCCAATGGG------------------ACAGAGTGTCCTCCCTCCGTGGGCACCCAGAGCCC a score=22398.0 s hg17.chr17_random 559356 86 + 2618010 TACCTTTCTGCTGCTTTTGTATTTCTCCCAGTCTCCCAGCATATCCACCCACTTGCTCTTTCGGCTGATCTCCCGCCG-AATTTGCT s panTro1.chr19_random 16309740 86 - 57627672 TACCTTCCTGCTGTTTTTGTAGGTGTCCCACTCTCCCAGCATTTTCACCCACTTGCTCTTTCGGCTGATCTCCCGCCG-AATTTGCT s mm5.chr2 175329395 86 - 181686250 TACCTTCTCGGTGTTCTTGTATCTCTCCCATTTTTTCAGCATTTTCAGCCACTTGGAAGTCCTTTCGATTTCCAGTTG-CTTTTGCT s canFam1.chr27 38313573 87 + 49087461 CACCTTCTTGCTGTGCTGGTATGTGTCCCATTTGCACAGCATCTTCACCTGCTTGTCTGCTCTCCAGGTCTCCTGGCATTTTTTGCT a score=196478.0 s hg17.chr17_random 559442 2019 + 2618010 GTCAAATGAGGCATGTTGGAGTTAGCGGAGCTGCCAGGCTTCCCAGAGCCGCCCGCGGATGCTGGGTCTTGGGCTCTGGAGCCCTGGTGGGAGCCAGCTGGAAGGAGCCAGGGAAGGGCAGACCTCAAGGGCTGAGAGCCTTTGAGCAAATGAGCACCAGTGGGCTGGCTTTGGGACCCCGGGATGTACCATCCTCAGGCCACAGACACACCAGTCTTAGGTCCCAGCCTCTAGGTGGGGTCCTGACACAAGCGCGCAGCCACCCCCAAGCCAGGACTGTGGTTCTCCTTTTGGAATTTTATCAAACTGCCAAAGTGAACAGCAACCTGGGGTCAGGTCCAGCAGGGACTGCTGCCCCTCCCAGTGACAGCGTGTTGCCCTCACCCGCCACCGCTCAGGCCAGCTGCTTCCTCTGCCTCACTGACCACCCGCCCAGTCCCTACGTCCCTGGACCAGCCCC-TCCACGCATCAGGCTCTTACCTTCGCCTCCCGCGCAGTCAGAGGAGGCAGCTCCGTCTCACTGTAAGGCAACCCAGGCAGAG--CTGAGGAACTGCACGGGGCCTGGAGCGGCCCCAGCCTGGGTGCCGACCCCCAGAAAGGACTGGCTCTGTCCCTTTCCAGCTCAGGGCTCAGCCCAGGAGAAGGCACAGGGAAGGGAGGACAAGGGCCTTCCTGTGGGGCTGATTCCCAGGAGGGGCAGGACCTGGGAGAAGAAGGAGTGTAGGGACAGCCTGGCCGGGGTTACTGGGGCCCCTGGCGTGGGGGGCGGTCAGGCTGCCCAATGGGGCTGCCCGTCCTGGACTCGAGGTGGTGCTTTCTGCTGGAG-CTGAGAAAGGTTAGCCCTG--AGATGGGATGGGGGCCGCCCAGGGTGGGCGACCGGGCCCTGACAGGAGTCCCTCAGGGAGTGACCACATCCCCCCACCAGGGTCAAGGGAGCCTGCCCTGAGACCTGCCCGGTGTACTCTGGCTGCACCAGGGGCCCACCCCACTTGACAGCCCCAAGGCCCTTGCAGATTCTGACCTCCCAGCATCCA-CCTGCCTCTCCCTGCACCCGAGCCACACACCCTGC------------------------GTTTCAGAAGTGGCACGGCTCATCAGCTCCCTCCCGCCCTACC----TCCCCAGGGAT------CCTCTGTCTCTCCATCCTG--------TGATCCCTGAGGGATGGGC------------TCCTGG----------CTGGGCTCCTCTTA----CCCGGCCCC----AGATCCCT-TCCCAGCACCAGACCCA-GGTCTTTAGCCGCGAGCCCTGCTGCCTCCCTGGCCT---CACCGTGAGATG-------CCCAGAACGGGGCCCTGCCCATCTTC-CCC--------------------CCGTTCTCCTAGGGCTACAGCC-CCCATTGTCACCATGCCTT----------TTCC-----CCTCAC----------GGGACAGTGAGGGCTGTAGCTCTAGGGG----AATGGGGGAGAACAGGGGCAGGTGGGCCC---TCAGA--GACCTGCTGGACAACAGCCCTGAGGCTGGGCCAGGAGTCCCCTCACCCTGTGGCCATAACCCTTGCATCTCACCGGGTTTG-TCTCCAAGTAGACAGGGCCAGACCCTCAGGCTGCCCC---GCTCCTCTTGTGCTCACTTGCCGACAGAACTGCTGAGCGCCCAGGGGCCTGACCTA--GCCCAGTCTCCATTCCCACCGGCTCCCTAG--------ATGGGCCCCACACCTCTGGCCT---AACAACCTCGGGCTGGACCTGCAGGGGAGTCAGGGAGGAGTTCTGTCCCTGGAAAGGAGGTTGACCCGACCTGGTGAGACATGTCCTGCGT-CAGAAAGGCCTTTCTAAAAGC-AAACCCATCCCTGAGCTGAGACAGGTGCTTTAGGGGTGAGGGGAGTGCAGAGGACTCACTGTACAATCCCCAAATGATCGACGTTGTTGTTGTAGCTTCGAAAAGGCTTAGGCCCCTTG----TCCTCTGGCAGCCCAGCTTGGTGTCCCTGTAGCCCAGAGGGAGCCTTGGTGA--GGGGT---------CCAAGGTAAAGGGTGCAAGGGCCTGGGGGCAT--TGGCCACCCGTCCCTGCCCTGTGCTCC-TAGGGAGCCCAGGACCCTTTGACCAGGGCACACT-GGAAGAG s panTro1.chr19_random 16309826 2029 - 57627672 GTCAAATGAGGCATGTTGGAGTTAGCGGAGCTGCCAGGCTTCCCAGAGCCGCCCGCGGATGCTGGGTCTTGGGCTCTGGAGCCCTGGTGGGAGCCAGCTGGAAGGAGCCAGGGAAGGGCAGACCTCAAGGGCTGAGAGCCTTTGAGCAAATGAGCACCAGTGGGCTGGCTTTGGGACCCCGGGATGTACCATCCTCAGGCCACAGCCACACAAGTCTTAGGTCCCAGCCTCTAGGTGGGGTCCTGACACAAGGGCGCAGCCACCCCCAAGCCAGGACTGTGGTTCTCCTTTTGGAATTTTATCAAACTGCCAAAGTGAACAGCAACCTGGGGTCAGGTCCAGCAGGGACTGCTGCCCCTCCCAGTGACAGCGCGTTGCCCTCACCCGCCACCGCTCAGGCCAGCTGCTTCCTCTGCCTCACTGACCACCTGCCCAGTCCCTACGTCCCTGGACCAGCCCCCTCCATGCATCAGGCTCTTACCTTCGCCTCCCGCGCAGTCAGAGGAGGCAGTTCCGTCTCACTGTAAGGCAACCCAGGCAGAG--CTGAGGAACTGCACGGGGCCTGGAGCGGCCCCAGCCTGGGTGCCGACCCCCAGAAAGGACTGGCTCTGTCCCTTTCCAGCTCAGGGCTCAGTCCAGGAGAAGGCACAGGGAAGGGAGGACAAGGGCCTTCCCGTGGGGCTGACTCCCAGGAGGGGCAGGACCTGGGAGAAGAAGGAGTGTAGGGACAGCCTGGCCGGGGTTACTGGGGCCCCTGGCGTGGGGGGCGGACAGGCTGCCCAATGGGGCTGCCCGTCCTGGACTCGAGGTGGTGCTTTCTGCTGGAG-CTGAGAAAGGTTAGCCCTG--AGATGGGATGGGGGCCGCCCAGGGTGGGCGACCGGGCCCTGACAGGAGTCCCTCAGGGAGTGACCACATCACCCCGCCAGGGTCAAGGGAGCCTGCCCTGAGACCTGCCCGGTGTACTCTGGGTGCACCAGGGGCCCATCCCACTTGACAGCCCCAAGGCCCTTGCAGGTTCTGACCTCCCAGCATCTA-CCTGCCTCTCCCTGCACCCTAGCCACACACCCTGC------------------------GTTTCAGAAGTGGCACGGCTCATCAGCTCCCTCCCACCCTACC----TCCCCAGGGAT------CCTCTGTCTCTCCATCCTG--------TGATCCCTGAGGGCTGGGC------------TCCTGG----------CTGGGCTCCTCTTA----CCCGGCCCC----AGATCCCT-TCCCAGCACCAGACCCAGGGTCTTTAGCCACAAGCCCTGCTGCCTCCCTGGCCT---CACCGTGAGATG-------CCCAGAACGGGGCCCTGCCCATCTTCTCCC--------------------CCATTCTCCTAGGGCTACAGCC-CCCATTGTCACCATGCCTT----------TTCC-----CCTCAC----------GGGACAGTGAGGGCTGTAGCTCTAGGGG----AATGGGGGAGAACAGGGGCAGGTGGGCCC---TCAGA--GACCTGCTGGACAACAGCCCTGAGGCTGGGCCAGGCATCCCCTCACCCTGTGGCCATAACCCTTGGATCTCACCGGGGTTG-TCTCCAAGTAGACAGGGCCAGACCCTCAGGCTGCCCC---GCTCCTCTTGTGCTCACTTGCCGACAGAACTGCTGAGCGCCCAGGGGCCTGACCTA--GCCCAGTCTCCATTCCCACCGGCTCCCTAG--------ATGGGCCCCACACCTCTGGCCTAACAACAACCTCGGGCTGGACCTGCAGGGGAGTCAGGGAGGGGTTCTGTCCCTGGAAAGGAGGTTGACCCGACCTGGTGAGACATGTCCTGCAT-CAGAAAGGCCTTTCTAAAAGCAAAACCCATCCCTGAGCTGAGACAGGTGCTTTAGGGGTGAGGGGAGTGCAGAGGACTCACTGTACAATCCCCAAATGATCGACGTTGCTGTTGTAGCTTCGAAAAGTCTTAGGCCCCTTG----CCCTCTGACAGCCCAGCTTGGTGTCCCTGTAGCCCAGAGGGAGCCTTGGTGA-GGGGGT---------CCAAGGTAAAGGGTGCAAGGGCCTGGGGGCAT--TGGCCACCCGTCCCTGCCCTGTGCTCCTTAGCGAGCCCAGGACCCTTTGACCAGGGCACACTGGGAAGAG s canFam1.chr27 38313660 1737 + 49087461 GCAAAATGAGAAGTAGAGGCAGTAGATAAGCTGCCAGCTATTTCAGA--------TTGATGCT-------------------CCATGTAGTGTCCAGC--------------------------------------------------------CACC----------CTTTGGGCCCTTAATGTGAACAAACTCACAGCGCTTCTCACACTGGCCCTGGCTCCCCGTCTCAAGGTGTGTTCCTGGCA-----GCACATGTAGCCCTGGGACAGG-----------------GGGGTTTGGTGAAATCCCCCTTG-GGACAGC--TTTGGGCACTGGGTCTGGAGAAAC-----------------------------------------------------------------------CTAGCCCCATGTCCAGCGACCACAT-------CCAGCCCT-GTAGCAGATCAGACTATTACCTTTGCCTCATGGGGGCTGGGGCCAGGCAGCTCCTTTTCCCTGGAAGGCAAGAGAAGCAGAGCCCTGAGGA----------------------------CTGGGTCCCTGACCCC--------CTGGCC--------------CACAAGTCTTAGCCCAGGA-----CACTTGGGAGAAG------------------AGGGCTGAC-CCCAGGGAGGGCAG-------------------------------------GGGCTTCCAGGTGCC-------TGTGGGTCATCCAGG--------------------------------GGCAGCATTCTGTGTGGGAGTCTGAGAAAGTTTGTTGCTGGCAAGTGGGGTAGGAG-------------------GCGCCCCCACAGCCATCCC-CAGGAGGTGACC-TGTCACTGTCCTAGAGT-----GCGCCAG-CCTGAGAGCTG-TCAGTATAGACTGGTTGCACCCTGTGATCGTCCAGC-TGATGTCCCCAC-ACCTTCACAGGGCCTCAGTGTCTAGTGTCCAGCCTGCCTCTCCCTGCAACCT-GCCATCATCCCTGCTGTGTGTGCTGTGACTTCACCCTTGTTTTA----TGTCAGGACATCTCTGTTACCCCTTGTCTTGTCAGAATTCCTGAGCATGACACACCCCTGGC---CCATCCAAATGGACACTTGTCCCTGGGTGGTGAGCAGTGACCAAGGGTCCTGGGAGCAGCCCAGTTGGCCTCTATCAAGTCTCCAGCCTCTGTGAGGTTCTTGTGGTTGCATCAGCCCAG-------CAGCCACCTTCCCTCCCTCC-CACTGTTCTATCCACCGTCCCATGTGCCCTCCCCAGGGCAGACTCTTCCCCTTCTTCCCTCCTCCTGTCCATGCTGGTTGTCCCTTCCCTCTGCTCTGCACCCTCCCTCCCTGACCTTGTCTTATAGCTGAACTTCCTGCAGTCCCACAGAAGCCTTTGGAGCTATGGAGGCCCTTGCCTTGAGGGTGTCAGTGGGGAGCATCAGTCCCATCTTGCTCCAGACCAGACTGTCCTCCTACAGAAAGGACGTCA---TGTCCCAG--AGCCCCTCACCCTCTGG----AGCCTGCTGAACTGACTGGATCCACCCTCTGAGTACAGAAGG-CACACATATGGCCCTCCCCAAAGCAGGCCTTGAGGCCAC-----------ACCTCTGAGTGTAGAGGTGCCCGGCCCAAGGCCCAG-CTCTATTCCTGCCCACTTCCGGGTTTGCCTCCTGGGTCTCGCAGCCCTAGGCTAG-CACAGACTCTGG-----CCCTCAGCGGGCTCCAGG--------------------GGATGAGGGCCTGACCTGGTGAGATGGGTCCTGCCTCCAGAGAGGCATTCCTGTAAGTGGAGACCACCCCC---CTGAGAT--GTGATGAAGGGGT-------GTCTAGATGACTCACTGCAGAAAACCATGATGGTCAGTGACCCTGC----ACAGCGAGAGGTCAGCATCTTCCTGAGGTTCCACTGGAGACCCTGCTTGGTGTGCCTGAAA--CAGAGGGGGCCCCCACAGCAGGGATACCTCAGAGCCAAGGACATAGGTGAAAAGA---GGGAGCAGAATGGCTCC---TCACTCCCCTGAATCCT-GAGGGAGCCCAGGACCCTCTGAAAATGGTATAGC-ATGAGAG a score=44719.0 s hg17.chr17_random 561461 492 + 2618010 GCCTCCCTCCAAGAAGCAGACCGACTTGTACCTTTTCGTATTTCATAATGATGTCCTCTCGCTCTTGTGCCCACCAACTGCCCGCGACCTCTACCACGTCCATCCTGTGAGACAGAATTGTCTAAAGGTCACACTGTACGCGGCGGCTTCGGAG-AACACCTGAACCGCTCTCGCCGGGCTCCCAGATGCTGGCTGGCTGCGTAACCCCCATTCCACCGCCGCCCCCAGGGAAAAAGGGGCCAGACCCAGTGGCCCACAGCTGCTCCAGTCTCTGGAGTCTCAAGTCCCAAGCAGGGGTGGGCATCTTCCCAAGGACTTGAGTACAGTGGGACCTAGACAGAGAATCCTGTTGTCCCCCAATGCCATGAAATGGGGACACACCGGCCCCAGCAGGTTGAATGGTTTCCTACCTGCCAAGGGTGAAGGGCCCATGATGGGCTATTCCAGGGATGTGGAGGCAGACTGGGGTCAGCGACCAGAGGTCTCTGTGCA s panTro1.chr19_random 16311855 492 - 57627672 CCCTCCCTCCAAGAAGCAGACTGACTTGTACCTTTTTGTATTTCATAATGATGTCCTCTCGCTCTTGTGCCCACCAGCTACCCGCGACCTCTACCACGTCCATCCTGTGAGACAAAATTGTCTAAAGGTTACACTGTACGCGGCGGCTTCGGAGTAACACCTGAACCGCTCTCGTCGGGCTCCCAGATGCTGGCTGGCTGCGTAACCCCCATTCCACCGCCGCCCCCAGGTAAAAAGGGGCCAGACCCAGTGGCCCACAGCCGCTCGAGTCTCTGGAGTCTCAAGTCCCAAGCAGGGGTGGGCATCTTCCCAAGGACTTGAGTACAGTGGGACCTAGACAGAGAATCCTGTTGTCCCCCAATGCCATGAAATGGGGACACACCGGCCCCAGCAGGTTGAATGGTTTCC-ACCTGCCAAGGGTGAAGGGCCCATGATGGGCTATTCCAGGGATGTGGAGGCAGACTGGGGTCAGCGACCAGAGGTCTCTGTGCA a score=269.0 s hg17.chr17_random 562054 15 + 2618010 TACTCATGTGGTGGA s canFam1.chr9 18861567 15 - 53642819 TAACCATACACTGGT a score=575.0 s hg17.chr17_random 562069 3 + 2618010 TTC s panTro1.chr19 35045044 3 + 82489036 TTT s canFam1.chr9 18861582 3 - 53642819 TTT a score=22370.0 s hg17.chr17_random 562072 96 + 2618010 CCAGCTTGGCAACTAAGCATATGCTCCACTTCCTCTCCTTCCTCATTGAACTCTTTCACTAAAAGAACAGTGCAAGAGAGACTTAAACTGTTTGCC s panTro1.chr19 35045047 96 + 82489036 CCAGCTTGGAAACTAAGCATATGCTCCACTTCCTCTCCTTCCTCATTGAACTCTTTCACTAAAAGAACAGTGCGAGAGAGACTTAAACTGTTTGCC s rn3.chr10 65129584 79 + 110733352 CCGGTTTGGAAGCTGGATGTCTGCCTCACTGGCCCTTCCTCCTCTCTGAACTCT--------AAGACCAG-----GGGACACGCAGAGCAT----C s canFam1.chr9 18861585 96 - 53642819 CCAGCTTGAGAACTAGGCACCTGCTTTACCACCTGCCCTTTGTCACTAAACCCTTTCACCAAAGGTGGAGAGCAAGAGAAACTCAAACCATTTGGC a score=281.0 s hg17.chr17_random 562168 4 + 2618010 TCAT s panTro1.chr19 35045143 4 + 82489036 TCAT s rn3.chr10 65129663 4 + 110733352 TAAG a score=28732.0 s hg17.chr17_random 562172 132 + 2618010 TCTTAAGACCTTTCAGGAAAAGTGTT-GGCAGGGAAGGAAATCTCCCAGCTCTGGGAAA-CAGTCTTGTGGATTATCTGC----TGGTTTCAT-----TGATCTGTGCTGTCC-TCC--CTGCATTCATTAGGAAAACTGGCCTTG s panTro1.chr19 35045147 132 + 82489036 TCTTAAGAACTTTCAGGAAAAGTGTT-GGCAGGGAAGGAAATTTCCCAGCTCTGGGAAA-CAGTCTTGTGGATTATCTGC----TGGTTTCAT-----TGATCTGTGCTGTCC-TCC--CTGCATTCATTAGGAAAACTGGCCTTG s rn3.chr10 65129667 140 + 110733352 TCTTTAGGCCTTTTGTG---GTTGTTAGGCAAGGGTGGGGATTTCCCAGCCAGGTGGAG-GAGGGTTGTGAGCGATCCGATCCGTGATTTTATCTGCATGGTCCCTCCTCTCCTTTC--CTCCTATCCTGGGGGAAAGTAGCCTCA s canFam1.chr9 18861681 135 - 53642819 TCTTAAGAACTTTTAGGAAAAATTTT-GGCAGGTAAGGACATTTCCCCACCAGGAGAAATGGGTGTTATGCATTCCTTGT----GGGTTTTGT-----TCATTTGTGCTGTCC-CCCTGCCCCAATCATTAGGAAAACCAGCTTTG a score=30511.0 s hg17.chr17_random 562304 115 + 2618010 GTTCAAATAAGAACAGGATTTGTCCTGGTGACAGAGAAAGGTTTCTTCTGATGTCCATATATCTCCGA-GGGGGATGCTTTCTCCAGGCAGAGGCTGTGGCCAAGC--GATCGGGGGG s panTro1.chr19 35045279 115 + 82489036 GTTCAAATAAGAACAGGATTTGTCCTGGTGACAGAGAAAGGTTTCTCCTGATGTCCATATATCTCCGA-GGGGGATGCTTTCTCCAGGCAGAGGCTGTGGCCAAGC--GATCGGGGGG s rn3.chr10 65129807 112 + 110733352 GTTCCAGTGAGAACAGGATTTGTTCTGGAGATAAAGAAGGGCTACCTCTGGTGTCCACACA-CTCTGA-ACGAGATGC-TCCTTGTGGCAAAAG-TGTGGCCAAGT--GCTCCATGAC s canFam1.chr9 18862136 115 - 53642819 GTTCTAATGAGAGCCAGATTTGTGCTGGGGACAAGGAAGGGTTTGTCCTAATGGCCACTGATCTCCCAGGGGGGATGCTCTCTTTAGATGGAGGGTGTAGTCAAGCCTGGCTGGG--- a score=8793.0 s hg17.chr17_random 562419 71 + 2618010 CTCAGAGG-GCTGCTGGGAAGGGGTGGGCCC--CTCTCTCCCCAGAGGGAAACTC-----CTGG---------GGACCTCTCGAGCAC s panTro1.chr19_random 57626610 71 - 57627672 CTCAGAGG-GCTGCTGGGAAGGGGTGGGACC--CTCTCTCCCCAGAGGGAAACTC-----CTGG---------GGACCTCTCGAGCAC s rn3.chr10 65129920 54 + 110733352 CCCACA----CTTCTAGGGAAGGCTGTAGCC------------------AAACTCC---TCTGG---------AAAACTCTGGAGCAC s canFam1.chr9 18862251 88 - 53642819 CTCGGGAGTGCTGCACCGGGAGGCTGCGGCCCACCCTTTTTCCACAGAGAAGCCCCAGGCCTGGTTGGCCACAGGCCCTCTTGAGCAC a score=1345.0 s hg17.chr17_random 562490 6 + 2618010 CCCTGC s panTro1.chr19_random 57626681 6 - 57627672 CCCTGC s canFam1.chr9 18862339 6 - 53642819 CCCAGC a score=291.0 s hg17.chr17_random 562496 3 + 2618010 CCA s panTro1.chr19_random 57626687 3 - 57627672 CCA a score=1692.0 s hg17.chr17_random 562499 6 + 2618010 tccttt s panTro1.chr19 49606599 6 + 82489036 tccttt s canFam1.chr9 34785382 6 + 53642819 tccttt a score=23182.0 s hg17.chr17_random 562505 171 + 2618010 aaacataaattcataaatacaaacaagtaggcc-attca--cagaaatatataaa----------atatgtcataggacgggtggcactctcatatggcaataattatgacaggggccggcaaatgacCTGAGTGACCCGGAGTGGCCTGAGCACTGACTCCCAAATGCCCTCCATAGGATGTT s panTro1.chr19 49606605 171 + 82489036 aaacatgaagttgtaaatataaacaggtaggcc-attca--caggaatatctaaa----------ttatgtcacaggaaaggtggcactctcatatggcaataattacgacagaggccagcaaatgacCTGCGTGACCTGGAGTGACCTGAGCACTGACTCCCAAACGCCGTCTGTAGAACGTC s rn3.chr10 45660890 143 - 110733352 AAACATAAATAAATAAATGTAATTAATCACCTC-AAGTAATCTGACATATATAAAGAAGAGTTGGTCAAGTCACAGGAAAG-------CCCTGTGTGCCAATG---------------GGGAAATGGCTTAAG-GACCCAGAGTGGCCCGAG---TAATTCCAGGTCACA-------------- s canFam1.chr9 34785388 169 + 53642819 agacataaatttttgagtttaaaaaggtgagtcaattta--cttgaaaatataaa----------atatgccattggaaaggcatcacgtacatatggtgagaattacaaagaaggcaggtaaacg--CTGGC-AGCCCAGAGTGATCTGAGCACTCATTTCCAAATGTCCTCCTTAGGACATG a score=110539.0 s hg17.chr17_random 562676 270 + 2618010 CTGCATCCCCGAGACCCTTTCCTGGGTCCTCCTGGGCCCTACCACCCCC--------------TAGACCATCCAGACCTCAGGTCATCCCCCTGTCTGTTGACAGAGTAGTCTCCATTCCTGAATGTGCTGGTCACCAGCAACAGCAGCTGCTCCTCCTCCGGGAAGCTCAGCCTATACTTCTACATGCAGAGAACCTGGACGGCACCC-AGGTGGACCTAAGCCTTCAGCTCCCAGTAGACGCTCTGGGTTTCCTACCCTG--CCCAGACACTCTGGGCTTCCCCC s panTro1.chr19 49606776 270 + 82489036 CTGCATCCCCCAGACCCTTTCCTGGGTCCTTCTGTGCCCTATCACCCCC--------------TAGACCATCCAGACCTCAGGCCACCCATCTCTCCGTTACCAGAGCAGTCTCCGTTCCCGAACGTGCTGGTCACCAGCAACAGCAGCTGCTCCTCCTCCAGGCAGCTCAGCCTGTACTTGTTCATACAGAGAACACGGACGGCACTG-AGGTAGACATAAGCCTTCAGCTCCCAGTAGACACTCTGGGTTTCCTACCCTG--CCCAGACACTCTGGGCTTCCCCC s mm5.chr11 43090264 240 - 121648857 CTGAGTCCCCCGGACCCTTTCCTTGGTCCTCCCAAGC-------CTCTC--------------TG------CCGAGTCTCCGGCCACCCACCTGCCCATTGCTGGGACAGTCTCCATTCCCAAATGTGCTTGTCACCACCAGCAGTAGTTGCTCCTCTTCCAAGGTGCTTGCCTTATACTGGTCCATGCAGACAACCTGTGTGACAACC--GTTGAACATCAGCCCCCAGCTCCCAA---------GGGGCCGCTTACACT---------CACTCCAGACTCCTTCC s rn3.chr10 45661033 251 - 110733352 CCGAGTCCCCTGGGCCCTTTTCTTGGTCCTCCTAAGCCCCTCTGCCCCC---------------AGATGAGCAGTGTCCCT-GCTACCTACCTGCCCATTGCTGGGGCAGTCTCCATTGCCAAATGTGCTTGTCACCACCAGCAGTAGTTGTTCCTCTTCCAAGGTGTTTGCCTTATACTGTTCCATGCAGACAACCTGTGTGGCACAC--CATGGATGTCAGCCCTCAGCTCCCAG---------GGGGTCCCTTACACT---------CACCCCAAGCTCCTTCC s canFam1.chr9 34785557 279 + 53642819 CTAAATCCCC-AGATCCTTTCCTTGGCTCCCTTGGGGCCTGGCATCCCCCACAACCCTGCACCCAGACCA-CTGGGCCCCAGGCCACCCACCTCTCCATTGCCAGGGGAGTCTCCGTTCCCAAACGTGCTGGTCACCACCAACAGTAGCTGCTCCTCCTCCAGGTGGCTCAGCTTGTACTCGTCCATGCAGAGAACCTGCAAGGCCCCGGGGGTGGACATCAGCCCTGTGTTCCCAG------GCCGAGGCCCTCTATGCCATCTCCAGATGCCCTGTGCTTCCTCC a score=11620.0 s hg17.chr17_random 562946 115 + 2618010 CACACCT------CCCCTCGTCCGGGGCTCCTGTGTGCATCTGTCTCTCCCAGTGCCCAGCACAGGCGTGGAACGGAAG-------------------AGGTGAATGGACCGATTTGAACACAtcatcctggattctccg s panTro1.chr19 49607046 115 + 82489036 CACACCT------CCCCCAGCCTGGTGCTCCTGTGCTCATCTGTCTCTCCCAGTGCCCAGCACAGGCGTGGCACGGAGG-------------------AAGCGAATGGACTGATGTGAACACAtcatcctggattctcct s canFam1.chr9 34785836 133 + 53642819 CCAACCCAGGAGACCCCTTATCA------CCTGTTTCCCCCCACCCCGCCCA-CGCCCAGCACCAGTGTGGTACAGGGGTGAGGGTTCTGTGAATCCCAGTCAAATAAACCTATATGAATACCTCGCTCCTCATCCTCCT a score=22279.0 s hg17.chr17_random 563061 136 + 2618010 ttccctctcaagccctgcagctaacccatcggcaagccctggaggctctgcctccaaaatcctgccta-tcccatgtgcaaacgcctctcaccatgtccactgctaTTTGCAGTTCTGTGTGTGTGGAAATACTTCC s panTro1.chr19 35020153 136 - 82489036 ttccctctcgagccctgcagctaacccatcggcaagccctggggcctctgcctccaaaatcctgccta-tcccatgtgcaaacgcctctcaccatgtccactgctaTTTGCAGTTCTGTGTGTGTGGAAATACTTCC s canFam1.chr9 34785969 127 + 53642819 ACCCCACTCAAGCCCCAACACCAACACTTCCACAAGCCCTGGAGGGCTTGCCTTCAAAATCCTGCTAAGTCCCAAATGAAAACACT----------TCCACTGCTACTCTGAATTCGGAGTGTGTGGACGTATTTTC a score=181840.0 s hg17.chr17_random 563197 2001 + 2618010 ACAAATTTGGAATGAACAGGTCACAGCTGTGCCTGGAGGGAATGGCCAGGGAAATGTGCCCTCGCCTTGCTGTTCTATCCAGGCCCACCCAGCTGAGGATGGGGGACCTGCCACCACTCTCCTGGCAGTTCCGGACTCCTGGGAACCGGCAGGTGA-GGACCCAAGAGTGTTTTCAGTGACCCGGCTGACCTGGTCATCCGTCAGTCCCACCTTGGCCTAGGCCTCTATACAGCACAGATCACAGCTCATTCCATCCTGGCATTACACTGGCCTGTGCCCTGTCCTCAGGGTCACATCCGTCTCCCAG-AAGCCGTGCAACCCTGGAAAACCCAGGTCTAACAGTCAGGTTCCTCCTCCGTGCATTAACAATGGCGTTGATGCCTGCTTTGCGGCACGCTGGGAGGGGAGAGGGAGGTGTATGCTGGAgagctccccaggggcaaggcctggctctgcgtcacccactgtcagatcctgagagcctggggctggcccagcacgtggccaccgttccctaagagttGGATTTCATCCCTCAGTGCTGAAGGCAGGGGATAGAGCTTAGACAGACCCCCT-GCGTCCTGTCTTCTTTATCTACAGCTTTCTCATCCTTGCCCCTTTCACGTGCACCCGGCAGAGCAGGTGTTCACTGAGCTTGAGCAAAATTCAAGCTAGAGCAGCTGATGGATCTTGAGGCCTAGATTCACTGTCAAAGTGTTTCTCAAACGGTGCTCTCCAGAACACCAAGGAAAACTCATTGACTGTGTAAGTCTGAAAATCCCTGCCCACCGGTCTACCTTTGTGTATGAGCAATCAGCTCTACCATTCAGCCCAGGTGTGTGTTTGCTGGACCATGTGgaggaagctgaagagacgtgagctgaaggcagagggtgagtccaaggtgggatcttgggacaggtacgagaagttaggcaaaaatgggataattctagccttcataaccttagataatagttcacattattatttagttaatagaactgtacccacattaaatttcttaaatttttttaagagataaagtctcactctgtcacccaggctggagtgcagtggtgcaatcatggctcactgcttcctggaactcgtgggctccagcaatcctcctgcctcagcctcctgactaggtgggactataggcacacgccaccatgcctggctaatttctttgacttttctctagagaccgggtccacctaggtttcccaggctggtctcagacttctagactcaagtgaacctgaacctcccgcctcgacctctcaaattgctgggattacaggtgtgagccaccacacccggcctaaatttcttatgtgccatgggactgcaaaacatcattattaggggcagctggatggaaggtataggaggatactatagtgccttttcaatatttctgtc-taaaatctaaaatcatttcaacaggaaacatttatttcaaaaCATGAAGGTGGTTATCCTTCCATGAGTTTGAAGTACAAAGGCAGGCTCACGGTGTCGTCAGAATTCAGAACGATGGTCGTGGGGCTTGGGGTGCTGGGAGGGGCTGGGCATGGTTGGCTTTGTGATCTGGGGTCTGGTGTGTTCCATCTCTGAATCTCTCTCGAGCTGCACTCTTTCTTAATACATTTTCATAAGTTTAACCAAAAATAAAACGAGGATGCGAAGCTTGCTTGGGTTGTTAAGCCTAGGGAAATTATCCAGCCATGAGCCCTGGCCCAGATGCTTCTAGAAGCCTGGAGGGAACTGAGAACTTTCCAAGTGGAGGCCGCAGAGGCAAGGCCCT-GAGGTGGGAGCACACTGCTGTTCGTCCCTAGCTCTGAAGGGGGTGCCCTGGTCGGAATCAGTGCTGGGTGCA-------------------------------------------GCGAAAGCCGATCTCACCCGCTCCGCAGGGTGTTCAGCCTGCCAGCAGGGGGCCAGCTGGTCCTCCTGGGATATGGCACGGACCCAGCAGCTCTGTCTGAAATCATAATGGCGGAA s panTro1.chr19 35020289 2049 - 82489036 ACAAATTTGGAATGAACAGGTCACAGCTGTGCCTGGAGGGAACGGCCAGGGAAATGTGCCCTCACCTTGCTGTTCTATCCAGGCCCACCCAGCTGAGGATGGGGGACCTGCCACCACTCTCCTGGCAGTTCCGGACTCCTGGGAACCGGCAGGTGATGGACCCAAGAGTGTTTTCAGTGACCCGGCTGACCTGGTCATCCGTCAGTCCCACCTTGGCCTAGGCCTCTATGCAGCACAGATCACAGCTCATTCCATCCTGGCATTACACTGGCCTGTGCCCTGTCCTCAGGGTCACATCCGTCTCCCAGGAAGCCGTGCAACCCTGGAAAACCCAGGTCTAACAGTCAGGTTCCTCCTCTGTGCATTAACAATGGCGTTGACGCCTGCTTTGCGGGACGCTGGGAGGGGAGAGGGAGGTGTATGCTGGAGAGCTCCCCAGGGGCAAGGCCTGGCTCTGCGTCACTCACTGTCAGATCCTGAGAGCCTGGGGCTGGCCCAGCACATGGCCATCATTCCCTAAGAGTTGGATTTCATCCCTCAGTGCTGAAGGCAGGGGATAGAGCTTAGACAGACCCCCTTGCGTCCTGTCTTCTTTATCTACAGCTTACTCATCCTTGCCCCTTTCACGTGCACCCGGCAGAGCAGGTGTTCACTGAGCTTGAGCAAAATTCAAGCTAGAGCAGCTGATGGATCTTGAGGCCTAGATTCACTGTCAAAGTGTTTCTCAAACGGTGCTCTCCAGAACACCAAGGAAAACTCATTTACTGTATAAGTTTGAAAATCCCTGCCCACCGGTCTACCTTTGTGTATGAGCAATCAGCTCTACCATTCAGCCCAGGTGTGTGTTTGCTGGACCATGTggaggaagctgaagagacatgagctgaaggcagagggtgagtccaaggtgggatcttgggacaggtacgagaagttaggcaaaaatgggataattctagccttcataaccttagataatagttcacattattatttagttaatagaattgtacccacattacatttcttaaatttttttaagagataaagtctcactctgtcacccaggctggagtgcagtggtgcaatcatggctcactgcttcctggaactcgtgggctccagcaatcctcctgcctcagcctcctgactaggtgggactataggcacacgccaccatgcctggctaatttctttgacttttctctagagaccgggtccacctaggtttcccaggctggtctcagacttctagactcaagtgaacctgaatctcccgcctcgacctctcaaattgctgggattacaggtatgagccaccacacccggcctaaatttcttatgtgccatgggactgcaaaacatcattattaggggcagctggatggaaggtataggaggacactatagtgccttttcaatatttctgtcgtaaaatctaaaatcatttcaacaggaaacatttatttcaaaaCGTGAAGGTGGTTATCCTTCCATGAGTTTAAAGTACAAAGGCAGGCTCACGGTGTCGTCAGAATTCAGAATGATGGTCGTGGGGCTGGGGGTGTTGGGAGGGGCTGGGCATGGTTGGCTTTGTGATCTGGAGTCTGGTGTGCTCCATCTCTGAATGTCTCTCGAGCTGCACTCTTTCTTAATACATTCTCATAAGTTTAACAAAAAATAAAACGAGGAGGCGAAGCTTGCTTGGGTTGTTAAGCCTAGGGAAATTATCCAGCCATGAGCCCTGGCCCAGATGCTTCTAGAAGCCTGGAGGGAACTGAGAACTTTCCAAGTGGAGGCCGCAGAGGCAAGGCCCTAGAGGTGGGAGCACACTGCTGTTCGTCCCTAGCTCTGAAGGGGGTGCCCTGCTCGGAATCAGTGCTGGGTGCACTGCAGGGCCGGGAAGTCCATGCCCACGTTGTGGCTCAGTGCAGTGCAAGCCGATCTCACCCGCTCCGCAGGGTGTTTAGCCTGCCAGCAGGTGGCCGGCTGGTCCTCCTGGGATATGGCACGGACCCAGCAGCTCTGTCTGAAATCATAACGGCGGAA a score=17001.0 s hg17.chr17_random 565198 144 + 2618010 CCAAGGGCCCTCTA-------CGTCCAGGTCCGTTGGGAGGCGGGGCATGGAGTTC---CACTGCAGGAATCTCCAGG--AACCCTGAGGTCCTCCCTGAGCCAGGGCCGGGCTGGGCACACCCTGAGTGCCCACAGGGTAGGTGTCTTCCCGGAC s panTro1.chr19 35022338 144 - 82489036 CCAAGGGTCCCCTA-------CGTCCAGGTCCGTTGGGAGGCGGGGCATGGAGTTC---CACTGCAGGAATCTCCAGG--AACCTTGAGGTCCTCCCTGAGCCAGGGCCGGGCTGGGCACACCCTGAGTGCCCACAGGGTAGGTGTCTTCCCGGAC s canFam1.chrUn 74253183 141 - 91062872 CCAGGGGCCACCTGCCTGCACCCTCCTGGTTCACTGGGAGGAAGAGGAGGTAGTTCCATCACTTTGGGGGCAGCCAGGCCAACAACGGA-----TCCTGGGTTGGGGGTAGCTGGGCCAGAACC--AGAGCCCCTAGGG--------TTCCCAGAC a score=4856.0 s hg17.chr17_random 565342 50 + 2618010 AGCCCCACCAGGACAGGGTGTGGAAGAACGAGGTGCCCGTGGCGGGGAAG s panTro1.chr19 35022482 50 - 82489036 AGCCCCACCAGGACAGGGTGTGGAAGAACGAGGTGCCCGTGGCGGGGAAG a score=30205.0 s hg17.chr17_random 565392 241 + 2618010 CTGACCAAATG--------GGCCGCGGGAACCGGGCTGGTGGGCCTGGAGGGGCCTGCCTGTCCCCCTTGCAGAGGGTCTTCCCGCCACGTGAAGCTGGCACAGGCCTGGATGCCGACGACCCTTGC------------------------------TCGGGTTTGGCTGAAAGGAAAACAGACGCGGTCAGCATCTCCAGTGAGCCCACGCAGGCCTTTCCGGGCTGGGCCCCACCTGCCTGCGTCTCTGGAGTCCTCGGGGTCTCTGTGTGGCCCCC s panTro1.chr19 35022532 241 - 82489036 CTGACCACATG--------GGCTGCGGGAACCGGGCTGGTGGGCCTGGAGGGGCCTGCCTGTCCCCCTTGCAGAGGGTCTTCCCGCCACGTGAAGCCGGCACAGGCCTGGATGCCGACGACCCTTGC------------------------------TCGGGTTTGGCTGAAAGGAAAACAGACGCGGTCAGCATCTCCAGTGAGCCCACGCAGGCCTTTCCGGGCTGGGCCCCACCTGCCTCCGTCTCTGGAGTCCTCGGGGTCTCTGTGTGGCCCCC s canFam1.chrUn 74253391 260 - 91062872 CTGGCCAGAAGGGGATCCAGGCAGCTCAGGCTGGGTGGCTGGGCCTGGGGAGGCCAGCTTATCCACTCTGGGCAGTGTCTCAGCAGTAGGAGAAGGGAGGAGAGGCCCAGGGGCCAGGGACACTCGCTCCAGGCCCAGGGGCCTCATGGGGAACTCGTCAGGTCCCCCTGGAAAG-AGGCAGACTGGGTTAGCATCTCCAGC-AGGCTGTGTGTCCCCAGCTGGG--GGGCCCCA---------------GGGGTCCTCATGGCTCCCACATAGTCCCC a score=9407.0 s hg17.chr17_random 565633 113 + 2618010 GTGGCCTGACACCGAGGACACGCCTGTAGTCTGCTGATCCCAGAGGGAGGGGTGCATGCTGCCTGGCGTGGGGAAGCTGTCGTGGCAT-GGCGGGTGGCTCCTGGGACTGCCCC s panTro1.chr19 35022773 113 - 82489036 GTGGCCTGACACTGAGGACACGCCTGTAGTCTGCTGATCCCAGAAGGAGGGGTGCGTGCTGCCTCGCGTGGGGAAGCTGTCGTGGCATAGGC-GGTGGCTCCTGGGACTGCCCC a score=43877.0 s hg17.chr17_random 565746 508 + 2618010 CAGGGTTCAGACTGGCTGGGGGCTTCCTGCCACACACCTTCGTCCCAGGGCTGTTGGGCCTGGGATACGGCCCCCAGTCAGAACTCAGGTGGGAGGGGCCTTGGATGTCACCCAGCCCCTTGTCACCTCACGTGGGGACCCGTCTCCGCAGTGGGTGATTGGGCCCGGACGTGGGTCACCCTCTGCCCTCCTGGGCTGCCCAGTCCATGCCAGGACTGACCGTTCCCACTTCTGGCTGAACTCTTGGCTCTGGCTCTGGGCCC------------------TCTCCCTGAATGCTCTGTGGGTCAGGGACACG-GATTCCCTTGTCTCCCTGGCTCCAGGCTTCTTGTCCTGGCAACCTTGGAGGAGCGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTGGGTGCTTGCAGGGAGGGGCGGGGTCTCCCACAAATGGGTCTGGGCTCGTCTAGTAACTTGGAGGGCCCTGCGAGGGGGAGAGGGAGACACCGTGGAAAGTGGGAGGGGGCTTGTTGGAG s panTro1.chr19_random 46799402 526 + 57627672 CAGGGTTCAGACTGGCTGGGGGCTTCCTGCCACACACCTTCGTCCCAGGGCTGTTGGGCCTGGGATATGGCCCCCCATCAGAACTCAAGTGGGAGGGGCCTTGGATGTCACCCAGCCCCTTGCCACCTCACATGGGGACCTGTCTCCGCAGTGGGTGACTGGGCCCGGACGTGGGTCACCCTCTGCCCCCCTGGGCTGCCCAGTCCATGCCAGGACTGACCGTTCCCACATCTGGCTGAATTCTTGGCTCTGGCTCTGGGCCCGGGGTCCCGCCTGTGCCCTCTCCCTGAATGCCCTGTGGGTCAGGGACACCCGATTCCCTTGTCTCCCTTGCTCAAGGCTTGTTGTCCTGGCAACCTTGGAGGAGCGTGCAGGAGTGAGGGGCCTCTGCTGCTCTCTGAGGCTGTGGGTGCTTGCAGGGAGGGGCGGGGTCTCCCACAAATGGGTCTGG-CTCATCTAGTAACTTTGAGGGCCCTGTGAGGGAGAGAGCGAGACACCGTGGAAAGTGGGAGGGGGCTTGTTGGAG a score=46907.0 s hg17.chr17_random 566254 391 + 2618010 GGTCTTGCCCACATCCCCCTCCTGCGTGCACAGCATGTCCAGTATACACGCACTG-AGCGCCTGCCCTGAGGACCGGTGGGCCTCCTGTACTTTCTTAGAGTCCAGGAGGAAGAGGAGGAAGA---AAAGGTGAAGAGGAAGGCCCAGGTAGTAGGGTTGCGGGTCCCGGGCACTCCCCTACTACTGACTACCCCAGAGGGTGACATGGGAGGGGACATGGCACTGGAGCCCACCTGGGGGTGGCAGGTCCCCCTGCTTTCTTGTTAGTTTCTTCATAGAGGCCCTAAGATGCTTGAGCACAGTGTCCTCATCCCTGGCCCAGGTATCAACGAACCGGT--TGCAAAAACGTGCCCACGGGCCACACCTGGACGTCTTCGTGAGGCGCTCTAGGGAC s panTro1.chr19_random 46799928 391 + 57627672 GGTCTTGCCCACATCCCCCTCCTGCGTGCACAACACATCCAGTATACACGCACTG-AGCGCCTGCCCTGAGGACCGGTGAGCCTCCTGTACTTTCTTAGAGTCCAGGAGGAAGAGAAGGAAGA---AAAGGTGAAGAGGAAGGCCCAGGTAGTAGGGTTGCTGGTCCGGGGCACTCGCCCACTACTGACTGCCCCAGAGGCTGACATGGGAGGGGACATGGCACTGGAGCCCACCTGGGGGTGGCAGGTCCCCTTGCTTCCTTGTTAGTTTCTTCGTAGAGGCCCTAAGATGCTTGAGCACGGTGTCATCATTCATGGCCCAGGTATCGAAGAATTGGTTCTGC--AGACGTGCCCACAGGCCACACCTGGATGTCTTCATGAGGCGCTCTAGGGAC s canFam1.chrUn 74253659 356 - 91062872 GACCCTGTCCATAGTCCCCC------------ACACAGCTGGTGCCCAGGCCCTGCAGTGAGTGCCCGCATGTCCAGC---CCTGGCCTGGTTTCCTTGAGGCT-GGAGCAGAAGAGGAGAGGCCTAAAGATGAGGAAGAAGGCCCAGG-------------------GGGCTCTT-CCCACTGTGGAC--CCTGGGAGGGTGAATTGGGAGGGGATGGGACCCT-AAGCCCACCTACAGGGGTCAGGTCACACTTCATCCTTCAGAGCTGGGTCATGGAGGCCCAAAGGTGTCTGAGCACCACCTCATCCTCCAGGGCCCAGGGCTGGGCCAGCGAGTCCTGC--AGAAACTCCCAAAGACCTTCCAGGGGCAGCTTCAGGAGGCATTCTGGGAGG a score=24927.0 s hg17.chr17_random 566645 275 + 2618010 AGGGTGGATATCAG-GCCAGGGGAGTTACCTGGGAATGGTCACAGCTCATATCCCGTGGCCACTTCAGTCTCCTACTGGGCGGTGCCAGATCCTTTTGTGGCCACCCCAGGTGTCCAGATATACACAGGAGA-CTGTGGCTGGGGGGCGATCCGGACAGGGAAGTGCTCACCACACTCTCGACTTTCATCTGGGTCATGTGGGGGATGGGCTCGGTGTCACAGTGTCCTGC----CCAGCCCACCTGGCCAGACCTCCC--------TCTGGG------CCAGAACAGAGGATCA s panTro1.chr19 35023296 274 - 82489036 AGGGTGGATATCAG-CCCAGGGGAGT-ACCCTGGAATGGTCACAGCTCATACCCCGTGGCCACTTCAGTCTCCCACTGGGCGGTGCCGGATCCTTTTGTGGCCACCCCAGGCATCCAGATATACACAGGAGA-CTGTGGCTGGGGGGCGATCTGGACAGGGAAGTGCTCACCACACTCTCGACTTCCATCTGGGTCATGTGGGGGATGGGCTCGGTGTCACAGTGTCCTGC----CCAGCCCACCTGGCCAGACCTCCC--------TCTGGG------CCAGAACAGAGGATCA s canFam1.chrUn 74254015 217 - 91062872 TGGGTGTGAGTCAGACCCAGAGGGGC---------------------CCCACCCTGTGGCCCC--CAGGTGCCTCCCAGGGGCAGCAG------------------CTGGGGGTTAAGCTGTGCCCAGGAGAGCCATGG--GCAGTGCGAT--GGACAAGGAAGGCCCCTGCCTGCT---------------GCTCCTTTCAGGGA------------------GCCCCGCTAAACCTGCCTGCCTGGCCATCCGCCCCCACCCAGGCCTGGGTGCTACTCAGAGCAGAGGGTTA a score=4922.0 s hg17.chr17_random 566920 53 + 2618010 TGAGGACAGTGTGAGGAAGCTGCCCTCGGGCCAGTCGGGGTCTGACCCCAGGG s panTro1.chr19 35023570 53 - 82489036 TGAGGACAGTGTGAGGAAGCTGCCCTCGGGCCAGTCGGGCTCTGACCCCAGGG a score=87631.0 s hg17.chr17_random 566973 894 + 2618010 CTCCCCAGGCCCCGCTGGGCACACGTAGACTTACTCTGCTGAACCTTAAAGGCGATTCTTGTTATCGGCATCAACGCCTGTTCGCCTTCTACCAGATACACGTCCCACAGGCGCAGGGTGAGCCCGAGAGAGATCTGTGGGGACAGCAGGTGTGAAAGAA-----------------CCTGGTCCTTCCAGGCTGGGGCTGGTGGCT-----------------------------CGAGCTGCGCACACTGGGGCTTCA----GTCTCCAGAGTCAGTGACCTTCCCCATGAG----GGTCGCCTGAGCCCTCCAGGACGCTGGGTCAGACAAGGTCTTGAAGCTCCTCATGGGGGGCA-----------CTCATTTGAGTGGGGATGTGGCTCCTGGAGAGAGG------GGCTTGCCCAGGGCTTGAGGCTTCCCTGAGCCCTCTCAAGTCGGGTCCTGGCCCAGTCTGCCCATGAG--GCTGGGCCTGAGCCCCAG-CCATGGCCCTGGGATGACCCCCCTTGGG---CAGAGGGTTTTGCTTG--TGTGTC-----------------CTTTGGGGACCC-------GCCTGAGCCTCCTGTGGGCTGGGAGTGAGCCAGACCCCCGGGCTGGGGAAGCAGGGCACTGCAGGGCAAGGAAGGTCCCTGAGCCAGGGTCTCCCTATGCCTCCTTACCCCGTCAATCAATATCCGGATGAGGCAGCCTAACGGGGAACACTGCCCACATAGATC--TTTCTTGTCCTGATGGAAGCAACAGAGGTGCTCAGGCCACTGGGCTGCCCTAAAAACCTCCCTCTTCCAGGGCCTCTGAAGACCCTTCCCCTAGTGCAGAACACTGGGCGGTGTCCAGAGCTCCCCACAACACTGTCACCTTCCCACACTCCCGGTGGACACACTGCCCTTTGCCCTGCTCTGTGGGAGCTGGGCCCCCATCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACC s panTro1.chr19 35023623 894 - 82489036 CTCCCCAGGCCCCGCTGGGCACACGTAGACTTACTCTGCTGAACCTTAAAGGCGATTCTTGTTATCGGCATCAACGCCTGTTCGCCTTCTACCAGATACACGTCCCATAGGCGCAGGGTGAGCCCGAGAGAGATCTGTGGGGACAGCAGGTGTGAAAGAA-----------------CCTGGTCCTTCCAGGCTGGGGCTGGTGGCT-----------------------------CGAGCTGCGCACACTGGGGCTTCA----GTCTCCAGAGTCAGTGACCTTCCCCATGAG----GGTCGCCTGAGCCCTCCAGGACGCTGGGTCAGACAAGGTCTTGAAGCTCCTCATGGGGGGCA-----------CTCATTTGAGTGGGGATGTGGCTCCTGGAGAGAGG------GGCTTGCCCAGGGCTTGAGGCTTCCCTGAGCCCTCTCAAGTCGGGTCCTGGCCCAGTCTGCCCATGAG--GCTGGGCCTGAGCCCCAG-CCATTGCCCTGGGATGACCCCTCTTGGG---CAGAGGGTTTTGCTTG--TGTGTC-----------------CTTTGGGGACCC-------GCCTGAGCCTCCTGTGGGCTGGGAGTGAGCCAGACCCCCGGGCTGGGGAAGCAGGGCACTGCAGGGCAAGGAGGGTCCCTGAGCCAGGGTCTCCCTATGCCTCCTTACCCCGTCAATCAATATCCGGATGAGGCAGCCTAAGGACGAACACTGCCCACATAGATC--TTTCTTGTCCTGATGGAAGCATCAGAGGTGCTCAGGCCACTGGGCTGCCCTAAAAACCTCCCTCTTCCAGGGCCTCTGAAGACCCTTCCCCTAGTGCAGAACACTGGGCGGTGTCCAGAGCTCCCCACAACACTGTCACCTTCCCACACTCCCGGTGGACACGCTGCCCTTTGCCCTGCTCTGCGGGAGCTGGGCCCCCATCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACC s canFam1.chrUn 74254254 839 - 91062872 CTCCCAGGGCCTC---------------ACTTACTCCTGTGCACCTTGAGGATTGTGTAAGCCATGGCTGTGAGCAGCACTTC-CCATCCAGGATGTAGGCATCCCAGAGCTTCAGGGTAAGCGAGAAGGGGGTCTA-GGGGACAGCAGG-GTGGGAGGAGCAACCTAAGCAGGGCCCCTGGGGGGTCTCAGCTCAGACTAGGAACTCCCATCTGCCTACAGCCCCTACCACCCCCCTGGCTGCCTCCAACAAGGCCCCACAGCCCCTCCTGTGTGTGCACTCTTCCCAAGGAGATCAGGGCTCCTG-GCCACCCGGGGTTCTGACCCTGGCCAGCACCACCTGCAAACCTGGGGGGGCAGAGACTCTTCCCCCACTTGA-TGACAACATGCCTC-----GAGAGGACCCCAGGCTGGCCGCAGAATGGA-----CCAAGGGCTTTTCCACACCCCAGGCTGACCTGGCCTTCCCTGGGGGAGCTGAAGCAGAG--ACAGCCCACCCCCCTGAAAC--CTCCTCCAGGGACCCTCTGGGTTTCTCTAGGATGGGTCTCTGCTGCGACCCTCAGCCTTAGGGCCCCGGGTCGGGCCTGGCTTATCTGGAGGGTGGGGCTGAGCTTGGCCCTC-ACCTGGG--ATCAGG--------GGGCAAGTCAGG-----AAGCATGGG--TCCTTAGGTGGCCTTACCCAGTCTATGAAACACTGAAGGAACCA-CTTGGGGGTGTA-AATGCCAGTGCACATCTGTTCCTCATCCTGGTGGAAGGGCAGGAGGTGCTCAGG--------------------------------------------------TCCCACACCGCAG--CCCCAGGGAG---------------------------------------CCAGGTGGACACACTCCCCACAGCTCTGCACAGACCCAAGGGCGCCCCCAG---------------GCCCCCAGGAGGAGGAACGTGACC a score=0.0 s hg17.chr17_random 567867 34 + 2618010 AACTCCCAGCCCATGGAGAACCCGACGTCCCAGG a score=1255.0 s hg17.chr17_random 567867 13 + 2618010 AACTCCCAGCCCA s panTro1.chr19 35024517 13 - 82489036 AACTCCCAGCCCA a score=1692.0 s hg17.chr17_random 567880 21 + 2618010 TGGAGAACCCGACGTCCCAGG s panTro1.chr19_random 46801558 21 + 57627672 TGGAGAACCCAAAGTCCCAGG a score=35201.0 s hg17.chr17_random 567901 326 + 2618010 TCAGGCCCTGGCTGGGACTCAGCCAGTCACCAGCCCCACGAGGGGCTCCAGCCCCCCTGCTCCTACAGCCCCACGGGAGGCAGGGCCTCTGGGAAGAGCTGAGGGGACCATAAACTCACCTGATGCCCCATGGTCTTGGGTTGTGACGTGGCTACCACATGCTCCTGTTGGTCTTGGAGCCCCTGGACGGTCCTGCCATTTGGGCTGTGAAATCCTGAGAAGCCCCCA-GCCCATCATGAAATCAGAGCCTTCCCCCA----AGATGTGGAGCCATCAGCTGCAAGAGCTGGGCAGCTGGAGAGGCCCCCAAACCCCAAGGCCTCCCACCC s panTro1.chr19_random 46801579 326 + 57627672 TCAGGCCCGAGCTGGGACTCCGCCAGTCACCAGTCCCACAAGGGGCTCCAGTCCCCCTGCTCCTACAGCCCCACAGGAGGCAGGGCCTCTGAGAAGAGCCGAGGGGACCATAAACTCACCTGATGCCACATGGTCTTGGGTTGTGACTTGGGTACCACATGCTCCTGTTGGTCTTGGAGCCCCTGGACTGTCCCACCATTTGGGCTGTGGAATCCTGAGAAGCCCCCA-GCCCATCATGAAATCAGAGCCTTCCCCCA----AGGTGTGGAGCCATCAGCTGAAAGAGCTGGGCAGCTGCAGAGGCCCCCAAACCCCAAGGCCTCCCGCCC s canFam1.chrUn 74255093 277 - 91062872 ------CCAAACT----CTGAGCAGCTCAGAAGGCCCGCG------TCCCCACCCCCTGCCCCAG----GCCATGGG-GACAGAGCCTCTGGGGAG------------CTTCCACTCGCCATGTGCTTCTTCAGCTTGGGGAGAGCTCTGTCTAGAACGTGCTCGTGATGGGCCTGGAACCTCAGCAGTTTGGGGAACCCTGGAATGAAGAAGCCTGAGAAGGCCCCAGGCCCCCCACG--ATCAGGGCCTCCTCCTATACCAGGTATGGGGGTGTC-------------------CTGGCAGGGGCCTCCTCCCCCATGCCCTGCCCCCC a score=22589.0 s hg17.chr17_random 568227 239 + 2618010 TCCCATCTGGTGACCCCAACATGCGGCCTTTACCCTGGGGAGGTGGGGCGGGAACATTCCCTGGAGCCTGGCTGG---AGGTTCCCCTGGAGGCCTCCTGGGCCAGGG--TGCAAAAAGGGCAAGCCTGACTTTCAGGCCACGA----CAGGGTGGCCGGA--ACTGGGTGGGCGCTGGGC-TTCCCGGTCATCT------CCTGGTAGTGGGGTCGGGCCAGGGAACAGGGGATGGGGAGATGCTGCCACATGGGC s panTro1.chr19_random 46801905 238 + 57627672 TCCCATCTGGTGACCCTACCATGCGGCCTTTGCCCTGGGGAGGTGGGACAGGAACATCCCCTGGAGCCTGGCTGG---AGGTTCCCCTGGAAGCCTCCTGGGCCAGGG--TGC-AAAAGGGCAAGCCTGACTTTGAGGCCACAA----CAGAGCGGCCAGA--ACAGGGTGGGTGCTGGGC-TTCCTGGTCATCT------CCTGGAAGTGGGGTCGGGCCAGGGGACACGGGATGGTGAGATGCTGCCATCTGGGC s canFam1.chr2 58036715 220 + 87725193 TCACA----GAGACCC-----TGCGGGTCGTGGGCTGGGGGCTGAGGACCAG-------------GCCTGGCTGACCCAGCACCCTCT------CTCCTG---CAGGGGCCGCCGCAGGGACAGGC--GGGTCCCCAGCCCCGAGGGGCAGTGGGTGCAGGCCACGGGGAGGGTGATGGGTGTGCATGGCCCTCTGTGGGGCTTGGGAGTGAGGCTGG----GGGTCCCCGGGAGGGGGAGACGCTGCCCCCTGGGC a score=104069.0 s hg17.chr17_random 568567 1141 + 2618010 ggctgaggcagagggattgctggagcccacgagttccaggaagcagtgagccatgattgcaccactgcactccagcctgggtgacagagtgagactttatctcttaaaaaaaTTTAAGAAATTTAATGTGGGTACAGTTCTATTAACTAAATAATAATGTGAACTATTATCTAAGGTTATGAAGGCTAGAATTATCCCATTTTTGCCTAACTTCTCGTACCTGTCCCAAGATCCCACCTTGGACTCACCCTCTGCCTTCAGCTCACGTCTCTTCAGCTTCCTCCACATGGTCCAGCAAACACACACCTGGGCTGAATGGTAGAGCTGATTGCTCATACACAAAGGTAGACCGGTGGGCAGGGATTTTCAGACTTACACAGTCAATGAGTTTTCCTTGGTGTTCTGGAGAGCACCGTTTGAGAAACACTTTGACAGTGAATCTAGGCCTCAAGATCCATCAGCTGCTCTAGCTTGAATTTTGCTCAAGCTCAGTGAA-CACCTGCTCTGCCGGGTGCACGTGAAAGGGGCAAGGATGAGAAAGCTGTAGATAAAGAAGACAGGACGCAGGGGGTCTGTCTAAGCTCTATCCCCTGCCTTCAGCACTGAGGGATGAAATCCAACTCTTAGGGAACGGTGGCCACGTGCTGGGCCAGCCCCAGGCTCTCAGGATCTGACAGTGGGTGACGCAGAGCCAGGCCTTGCCCCTGGGGAGCTCTCCAGCATACACCTCCCTCTCCCCTCCCAGCGTGCCGCAAAGCAGGCGTCAACGCCATTGTTAATGCACGGAGGAGGAACCTGACTGTTAGACCTGGGTTTTCCAGGGTTGCACGGCTTCTGGGAGACGGATGTGACCCTGAGGACAGGGCACAGGCCAGTGTAATGCCAGGATGGAATGAGCTGTGATCTGTGCTGTATAGAGGCCTAGGCCAAGGTGGGACTGACGGATGACCAGGTCAGCCGGGTCACTGAAAACACTCTTGGGTCCTCACCTGCCGGTTCCCAGGAGTCCGGAACTGCCAGGAGAGTGGTGGCAGGTCCCCCATCCTCAGCTGGGTGGGCCTGGATAGAACAGCAAGGCGAGGACACATTTCCCTGGCCATTCCCTCCAGGCACAGCTGTGACCTGTTCATTCCAAATTTGT s panTro1.chr19 32880597 1142 - 82489036 ggctgaggcaggaggattgctggagcccacgagttccaggaagcagtgagccatgattgcaccactgcactccagcctgggtgacagagtgagactttatctcttaaaaaaatttcagaaatttaatgtgggtacaattctattaactaaataataatgtgaactattatctaaggttatgaaggctagaattatcccatttttgcctaacttctcatacctgtcccaagatcccaccttggactcaccctctgccttcagctcatgtctcttcagcttcctccACATGGTCCAGCAAACACACACCTGGGCCGAATGGTAGAGCTGATTGCTCATACACAAAGGTAGACTGGTGGGCAGGGATTTTCAAACTTATACAGTAAATGAGTTTTCCTTGGTGTTCTGGAGAGCACCGTTTGAGAAACACTTTGACAGTGAATCTAGGCCTCAAGATCCATCAGCTGCTCTAGCTTGAATTTTGCTCAAGCTCAGTGAAACACCTGCTCTGCCGGGTGCACGTGAAAGGGGCAAGGATGAGTAAGCTGTAGATAAAGAAGACAGGACGCAGGGGGTCTGTCTAAGCTCTATCACCTGCCTTCAGCACTGAGGGATGAAATCCAACTCTTAGGGAACGGTGGCCACGTGCTGGGCCAGCCCCAGGCTCTCAGGATCTGACAGTGAGTGATGCAGAACCAGGCCGTGCCCCTGGGGAGCTCTCCAGCATACACCTCCCTCTCCCCTCCCAGCGTCCCGCAAAGCAGACGTCAACACCATTGTTAATGCACAGAGGAGGAACCTGACTGTTAGACCTGGGTTTTCCAGGGTTGCATGGCTTCTGGGAGACAGATGTGACCCTGAGGACAGGGCACAGGCCAGTGTAATGCCAGGATGGAATGAGCTGTGATCTGTGCTGCATAGAGGCCTAGGCCAAGGTGGGACTGACAGATGACCAGGTCAGCCGGGTCACTGAAAACACTCTTGGGTCCTCACCTGCCGGTTCCCAGGAGTCCGGAACTGCCAGGAGAGTGGTGGCAGGTCCCCCATCCTCAGCTGGGTGGGCCTGGATAGAACAGCAAGGTGAGGGCACATTTCCCCGGCCGTTCCCTCCAGGCACAGCTGTGACCTGCTCATTCCAATTTTGG a score=32018.0 s hg17.chr17_random 569708 251 + 2618010 GGAAGTATTTCCACACACACAGAACTGCAAAtagcagtggacgtggtgagaggcgtttgcacatggga-taggcaggattttggaggcagagcctccagggcttgccgatgggttagctgcagggcttgagagggaacggagaatccaggatgaTGTGTTCAAATCGGTCCATTCACCT-------------------CTTCCGTTCCACGCCTGTGCTGGGCACTGGGAGAGACAGATGCACACAGGAGC-CCCGG-----CCGAGGGGAGGTGTG s panTro1.chr19 32881739 251 - 82489036 GGAAATATTTCCACACACACAGAACTGCAAAGAgcagtggacatggtgagaggtgtttggacatggga-taggcaggattttggaggcagagcctccagggcttgccgatgggttagctgcagggcttgagcggggaaggagaatccaggatgaTGTGTTCACATCAGTCCATTCGCTT-------------------CCTCCGTGCCACGCCTGTGCTGGGCACTGGGAGAGACAGATGAGCACAGGAGCACCAGG-----CTG-GGGGAGGTGTG s canFam1.chr9 18856723 260 - 53642819 GAAAATACGTCCACACACTCCGAATTCAGAGTAGCAGTG----------GAAGTGTTTTCATTTGGGACTTAGCAGGATTTTGAAGGCAAGCCCTCCAGGGCTTGTGGAAGTGTTGGTGTTGGGGCTTGAGTGGGGTAGGAGGATGAGGAGCGAGGTATTCATATAGGTTTATTTGACTGGGATTCACAGAACCCTCACCCCTGTACCACACTGGTGCTGGGCG-TGGGCGGGGTGGGGGGAAACAGGTGA-TAAGGGGTCTCCT-GGGTTGG---- a score=111365.0 s hg17.chr17_random 569959 270 + 2618010 GGGGGAAGCCCAGAGTGTCTG--GGCAGGGTAGGAAACCCAGAGCGTCTACTGGGAGCTGAAGGCTTAGGTCCACC-TGGGTGCCGTCCAGGTTCTCTGCATGTAGAAGTATAGGCTGAGCTTCCTGGAGGAGGAGCAGCTGCTGTTGCTGGTGACCAGCACATTCAGGAACGGAGACTACTCTGTCAACAGACAGGGGGATGACCTGAGGTCTGGATGGTC--------------TAGGGGGTGGTAGGGCCCAGGAGGACCCAGGAAAGGGTCTCGGGGATGCAG s panTro1.chr19 32881990 270 - 82489036 GGGGGAAGCCCAGAGTGTCTG--GGCAGGGTAGGAAACCCAGAGTGTCTACTGGGAGCTGAAGGCTTATGTCTACC-TCAGTGCCGTCCGTGTTCTCTGTATGAACAAGTACAGGCTGAGCTGCCTGGAGGAGGAGCAGCTGCTGTTGCTGGTGACCAGCACGTTCGGGAACGGAGACTGCTCTGGTAACGGAGAGATGGGTGGCCTGAGGTCTGGATGGTC--------------TAGGGGGTGATAGGGCACAGAAGGACCCAGGAAAGGGTCTGGGGGATGCAG s mm5.chr11 78558353 240 + 121648857 GGAAGGAGTCTGGAGTG---------AGTGTAAGCGGCCC---------CTTGGGAGCTGGGGGCTGATGTTCAAC--GGTTGTCACACAGGTTGTCTGCATGGACCAGTATAAGGCAAGCACCTTGGAAGAGGAGCAACTACTGCTGGTGGTGACAAGCACATTTGGGAATGGAGACTGTCCCAGCAATGGGCAGGTGGGTGGCCGGAGACTCGG--------------------CAGAG-------AGGCTTGGGAGGACCAAGGAAAGGGTCCGGGGGACTCAG s rn3.chr10 65072068 251 + 110733352 GGAAGGAGCTTGGGGTG---------AGTGTAAGGGACCC---------CCTGGGAGCTGAGGGCTGACATCCATG--GTGTGCCACACAGGTTGTCTGCATGGAACAGTATAAGGCAAACACCTTGGAAGAGGAACAACTACTGCTGGTGGTGACAAGCACATTTGGCAATGGAGACTGCCCCAGCAATGGGCAGGTAGGTAG-CAGGGACACTGCTCATC--------------TGGGG-GCAGAGGGGCTTAGGAGGACCAAGAAAAGGGCCCAGGGGACTCGG s canFam1.chr9 18856983 279 - 53642819 GGAGGAAGCACAGGGCATCTGGAGATGGCATAGAGGGCCTCGG------CCTGGGAACACAGGGCTGATGTCCACCCCCGGGGCCTTGCAGGTTCTCTGCATGGACGAGTACAAGCTGAGCCACCTGGAGGAGGAGCAGCTACTGTTGGTGGTGACCAGCACGTTTGGGAACGGAGACTCCCCTGGCAATGGAGAGGTGGGTGGCCTGGGGCCCAG-TGGTCTGGGTGCAGGGTTGTGGGGGATGCCAGGCCCCAAGGGAGCCAAGGAAAGGATCT-GGGGATTTAG a score=25940.0 s hg17.chr17_random 570229 171 + 2618010 AACATCCTATGGAGGGCATTTGGGAGTCAGTGCTCAGGTCACTCCGGGTCACGCAGgtcatttgccggcctctgtcataattattgccatatgagagtgccacctttcctgtgacataatttagacattcctgtgaatg---gcct-acctg---------tttatatttacaacttcatgttt s panTro1.chr19 32882260 171 - 82489036 GACGTTCTACAGACGGCGTTTGGGAGTCAGTGCTCAGGTCACTCCAGGTCACGCAGgtcatttgctggcctctgtcgtaattattgccatatgagagtgccacctttcctgtgacataatttagatattcctgtgaatg---gcct-acctg---------tttatatttacaacttcatgttt s rn3.chr10 65072319 143 + 110733352 --------------TGTGACCTGGAAT---TACTCGGGCCACTCTGGGTC-CTTAAGCCATTTCCC---------------CATTGGCACACAGGG-------CTTTCCTGTGACTTGACCAACTCTTCTTTATATATGTCAGATT-ACTTGAGGTGATTAATTACATTTATTTATTTATGTTT s canFam1.chr9 18857262 169 - 53642819 CATGTCCTAAGGAGGACATTTGGAAATGAGTGCTCAGATCACTCTGGGCTGC-CAG--cgtttacctgccttctttgtaattctcaccatatgtacgtgatgcctttccaatggcatattttatattttcaagtaaatt---gactcacctt---------tttaaactcaaaaatttatgtct a score=16622.0 s hg17.chr17_random 570400 105 + 2618010 aaaggaa-atttgtatcactctcataaatggaaagccagcaaaacataaattcaatgaaaacaaaatgaagtcaatgaactttagctagatactattccctgacca s panTro1.chr19 32882431 106 - 82489036 aaaggaatatttgtatcactctcacaaatggaaagccagcaaaacataaattcaatgaaaacaaaatgaagtcaatgaactttagctagatgctattccctgacca s canFam1.chr9 18857431 98 - 53642819 aaaggaaactttatatca--ctcacaaagggaaagcTGACAAA--ATAAATCTTATGAGAGCCA----AAGTTCTTGAATTTGAGCTAACTACTATTGTCTGGCCA a score=41105.0 s hg17.chr17_random 570505 459 + 2618010 aggcctgctggaggccGTACAACCGGGGTTTGAATTGAGATCTGCCAAGCTTCTGAGTTTATTCTGTTTCCCCCACACcaaggat-cctcaatactgcattactgacatcaggggccagacaattctttgcgatgggggctgtcctgcacctggcaggatgtttagcagcttctctggcctccacccactggaagccagGGGAATGCAGAAGAGGCTTGCTTattctcccatttaatgctcaggacaatatctgacatcaatgttacgtcttttattttataaatgaagacaatgagactcagaaaggtttaagtgagtcacctaagaacacacagacagcaagaggtagaacccgaaactgaacacaggtGTCCAC--GAGACAACAAAAAAGTTCAGGTTCCAGCTTCCTTTGAGTCTCTCATTTCAACAATGGCCATCGTCTGCATACGAGCTGAAGTA s panTro1.chr19 32882537 462 - 82489036 aggcctgctggaggcGGTACAACCAGGGTTTGAATTGAGATCTGCCAAGCTTCTGAGTTTATTCTGTTTCCCCCACACcagggttccctcaatactgcattactgacatcaggggccagacaattctttgcgatgggggctgtcctgcacctggcaggatgtttagcagcttctctggcctccacccactggaagccagGGGAATGCAGAAGAGGCTTGTTTattctcccatttaatgctcaggacaatatctgacataaatgttatgtcttttattttataaatgaagaaaatgagactcagaaagggttaagcgagtcacctaagaacacacagacagcaagaggtagaacccgaaactgaacacaggtGTCCACATGAGACAACAAAAAAGTTCAGGTTCCAGCTTCCTTTGAGTCTCTCATTTCAACAATGGCCATCGTCTGCATACGAGCTGAAGTA a score=145049.0 s hg17.chr17_random 570964 863 + 2618010 CAGGAAAGCTGGG--CTGAACTCTCTTCCCATCAGGCCTAGGAGCCCCAGACCAGAACCCCAGCCCAAGTTCTCCCAGTCAGGCCCGCTGGAG-GGAGCTGGCATCTACACTAGCATGGTTTCTCAAAGCTACAGGGATGCCAGTCTCGCTGCTGATGAAGAAAATGAAGGGCATTTGCTTCTCCTGCAGGCTGTCGGGATTTAACACAGATTCCTTTTCTTGCTCTCTTCTCCCATAGCACAAAACTGGGTGGTCCATCCCCCTCCCAGTGTCCC---AAGGCTT-TGTTGCGTGTTCTCTTTAATTTCTCCCACTC-TCGCAGTGCACCCTACCCTCGTCTCCCTGGCAACCTTTCTGCTCTATCCTCTCGCCACCTGGATCACAAGAACA-CTTGTGAGACCCCTTAACAAGCTACATCCCAAATTATCATTCCCC--TTTGTCCTCAGCCAGTGCCCGGGTCCAA---CTCGCTCTCCTGGGGTGACTTTCTTTCCTGCCCAATATGGTTTCATCATCTGTAAATTGGGGATAATTGAAGTCTTGATCCTGATAT-TGGGCTCTGAAAGCAGAAGTAGCAAGCTCAGCCAAGTCACTTAAACAAGAGGAGACGTTCCTTGTGAACCAAAAGGGCACTGGTCACAAGGGCCGCTCCTTCTCTCAGGCCTCTCCAGCACGCCCTTGGCT---CAGCCAAAGAAGAGACTCAGGCTGTGCTTCTGTGCTGTGG---GGATAACGTAGGTACCTGGTCCTTGACCCTGGGACTTTAACAGTTCCCTCTTGTGGCTCAGTTCTACAGCTTCAATGACACAAAGTGGCTTTTGCTCAAAATAGCCTTTGATAGGTTAAGGTACTCCTCTGCCACTCTAAGTCTGTG s panTro1.chr19 32882999 864 - 82489036 CAGGAAAGCTGGG--CTGAACTCTCCTCCCATCAGGCCTAGAAGCCCCAGACCAGAACCCCAGCCCAAGGTCTCCCAGTCAGGCCCGCTGGAG-GGAGCTGGCATCCACACTAGCATGGTTTCTCAAAGCTACAGGGATGCCAGTCTCGCCGCTGATGAAGAAAATGAAGGGCATTTGCTTCTCCTGCAGGCTGTCGGGATTTAACACAGATTCCTTTTCTTGCTCTCTTCTCCCGTAGCACAAAACTGGGTGGTCCATCCCCCTCCCGCTGTCCC---AAGGCTTCTGTTGCATGTTCTCTTTAATTTCTCCCACTC-TCGCAGTGCACCCTACCCTCGTCTCCCTGGCAACCTTTCTGCTCTATCCTCTCCACACCTGGATCACAAGAACA-CTTGGGAGGCCCCTTAACAAGCTACATCCCAAATTATCATTCCCC--TTTGTCCTCAGCCAGTGCCCAGGTCCAA---CTCGCTCTCCTGCGGTGACTTTCTTTCCTGCCCAATATGGTTTCATCATCTGTAAATTGGGGATAATCGAAGTCTTGATCCTGATAT-TGGGCTCTCAAAGCAGAAGTAGCAAGCTCAGCCAAATCACTTAAACAAGAGGAGACGTTCCTTGTGAACCAAAAGGGCACTGGTCACAAGGGCCGCTCCTTCTCTCAGGCCTCTCCAGCACGCCCTTGGCT---CAGCCAAAGAAGAGACTCAGGCTGTGCTTCTGCACAGTGG---GGATAACGTAAGTACCTGGTCCTTGACCCTGCGACTTTAACAGTTCCCTCTTGTGGCTCAGTTCTACAGCTTCAACGACACAAAATGGCTTTTGCCCAAAATAGCCTTTGATAGGTTAAGGTACTCCTCTGCCACTCTAAGTCTGTG s canFam1.chr9 23412911 836 - 53642819 CAGGCAGTCTAGGGCCTGAACTCCCCTCCTGTCAGGCCT----------------GATCCTGGCCTGAGGCCTTACAGCCAGGCTCACTGAAGCAAAGCTTGCCCCCACATTAGCCTGGTTTCCCAAAGCCAC--GGATACCGGTGTCTCAGCTGGTGGACAGAGTCAAGGATGTTGCCTCCCCCTACAGGTGGCCGGGGTTTGGCGCAGCTTCCCTTTCTCATGTTTTTCTACTGGAGCACAAAGCAGAGTTGGC---CCCACTCCGAATCCCCTTGGAAGGCTTTGGTTGCATATTCTCTTTAGTTTGTCTTGCTCTTTGATGGGCACCCTATTCCCATCTCCCTGGCCACCTTTCTGCACAATTCTCT----ACATAGTGCATCAGAACATTTTGAGAAGTCCTTTGGCAAGCTGCACCCCA------CGGCCCCCAGTTTACCCTCAACCAGTGCCCCAGACCAAACCTTTGGTCCCTCTGAATGATTTTCTTTCTTGTTCAATATGATTTCTTAATCTGTGAGCTATTAATAATTAAGGTCTTGATCCTGATATATATGACTCTAAAGCACAAGTTGCAAACTCGGCCAAGCCACTTAGATGGGAGGAGATACTGCTT-TGAACCTAAAGGATGCTGGTTACAATGGCCA--------CTCAGGCCCCTCAAGCATGCCATTGGCCTCGCTGCCAGAGAAGGGACT-AGGCTGTGCTTCTG--CTGTGGCCAGGATGACGGAGGGATCTCGTCCTAGATCTGGTGACTTTAATACCTTCGTCACAGTCCTTGATTTTACAGCTTCAATGATACAAGGTGGCTTTTGCTCAAATTAGCCTTTGA-----TCAAGTACTCCTCTGCCATTCTAAGTATGTG a score=855.0 s hg17.chr17_random 571827 9 + 2618010 TGGAACAGA s panTro1.chr19 32883863 9 - 82489036 TGGAACAGA a score=97776.0 s hg17.chr17_random 571836 602 + 2618010 CAGGGTTTTGCTTCACAGAGAAGATGCATAAAATTTGGTCTTAAAAATGAGTTCAC---------------CATGCA-CACATAcacacgaaaaaagtaaatactgcattactgta--tatatgaggtt-ccaaaataggcaaaactaatttatggtga-------cagaatagtggtgacctctgagggtcagtgttgactgggagagaacagaagagagcctactggggtgctggaaatgttctgtatcttaattt-tgcaggataattccttggatgcatccctaaaaattcagtcaagctatatagtaaga-tttgtg-----cagtttatgtaagtaaTA-GGAGAGATAAGAGGGGGAACCTGTGGAGAAGCAGAACATTTCAAGATCTAGAAAGCAACAGTTGCAAGGGTACACAGTGTTCAGACAGGGACCAAATCATAGAAACTACTAGGGCTTGCCATGCTGAAATGACTGACTTCAAACCATAGGGCA-TACGTACCTTCCACTGAAGAAGAGCACCTGAGTAAAATGACTAGAGGTGCATTTC--AAAGATTATTCTATGGGAAATATAAAGAACGAATTGGAGGAGTAGGAGGC---AAATAGTCCAAGGGACAGAT-ACAGATCTTTCt s panTro1.chr19 32883872 603 - 82489036 CAGGGTTTTGCTTCACAGAGAAGATGCATAAAATTTGGTCTTAAAAATGAGTTCAC---------------CATGCA-CACATAcacacgaaaaaagtaaatactgcattactgta--tatatgaggtt-ccaaaacaggcaaaactaatttatggtga-------cagaatagtggtgacctctgagggtcagtatcgactgggagagaacagaagagagcctactggggtgctggaaatgttctgtatcttaattt-tgcaggatatttccttggatgcatccctaaaaattcagtcaagctatatagtaagattttgtg-----cagtttacgtaagtaaTAGGGAGAGATAAGAGGGGGAACCTGTGGAGAAGCAGAACATTTCAAGATCTAGAAAGCAACATTTGCAAGGGTACACAGTGTTCAGACAGGGACCAAATCATAGAAACTACTAGGGCTTGCCATGCTGAAACGACTGACTTCAAACCATAGGGCA-TACGTACCTTCCACTGAAGAAGAGCACCTGAGTGAAATGACTAGAGGTGCATTTC--AAAGATTATTCTACTGGAAATATAAAGAACGAATTGGAGGAGTAGGAGGC---AAATAGTCCAAGGGACAGAT-AAAGACCtttc- s canFam1.chr9 24933230 588 - 53642819 CAGAAATTTACTTCATACAGAAAAGGCTTAAAATTTGGTCTTAAAAATGAGTTCACATCCCATTTTTTTTAAATGCACCATGCAcatacacgaaaagtaaacattctatgattttatttatacaagactgaaaaaatagataaaactaatttatagggacagaagtcagaacagtggttac--ctgaggggcagtatcaactggaagagggc--aagaaagcttactggggtgttggaaacattctctaccttggtttatgcatggtggttgcctgcgtacagagctaaaatttca-tcaagctatatagcatca-tttgtgcactccagtgaatgtaaGCAATA-----------------------------AAAGAAGGCATGCCAAGATCTGGGAAGCA------------GCGCACAGAGT--AGGCAAAGGCCAAGTCACAGAAATTACCAGGACTTCCCACACTAAA--GACTGACTTCAAACTACAGGGTGTTGGGTACCTTCCACT---GAGgagcatctgagtaaaatgaccagatgtatatttcagaaaggttattctagtggaaatataaaaaatggactgaaaaggtaggagactaataatagtccagaggacagatgaaggacttttc- a score=26971.0 s hg17.chr17_random 572438 312 + 2618010 ttctctttttttttttttttttttttttgagatagggtctccctctgtcaccctagctggagtgcatttctgcgatcatggctcactgcagcctctacttcctgcgctcatgcaatccttccatctcagcctcccaagtatctgggactccagatgtgcggaccacacctggctaatttttttattttgttgtagtaatgggaatctcactgttgtttcccaggctggtcttgaactcctgaactcaggcaatcttctggccttaacctctcaaagtgctgggattacaggtatgggctacagtgcctggcc s panTro1.chr19 32884475 300 - 82489036 ------------ttttttttttttttttgagacagggtctccctctgtcaccctagctggagtgcagttgtgcgatcatggctcactgcagcctctacttcctgcgctcatgcaatccttccatctcagcctcccaagtatctgggactccagatgtggggaccacacctggctaatttttttattttgttgtagtgacgggaatctcactgttgtttcccaggctggtcttgaactcctgaactcaggcaatcttctggccttgacctctcaaagtgctgggattacaggtgtgggctacagtgcctggcc a score=95524.0 s hg17.chr17_random 572750 541 + 2618010 TTATTAAAATGTTGATGTAATAAATGGGACTACCTAGTGCTGTGCTTTCTCCTTAAAGGAGAGAGCTGACAGAATAAAACTAGCAGTAATAATCTGGTAAATTGTGCTTTCTACAGAGTAAATTTTGTTTGTCTCATGACATTTATGCAAATATT-CAAATGTTTCAGGAATATAAACATTTAAAATTTGGGTTATAAATAATGCCTCCTGGCT-----CTGAAATTATCTGAATTCATGAAGCAATCAGTAGTAAATATGAAGGAAAAATGAAACACAGCCTTATATGCAAGGACAAACACAAATTTCTAATTCTTGTTATAAT-----------------TTGGGTGCCCACCTGGTTTTGAAGGTGAGCCTTGGTTTGACTGGTTCTGAGAC------ATTTCTCTCAAATAGCAAATGAGTAGTGGGTATGAATAGG-GTACATTGGAAAGTCATGTCAAAATTCCATGTAATTTTTGGAGCGTTTTTTCTCCCATATGATTTATATAATTTGACATGTGTATTCCTATGTAAAATATTTAACCACTTCTCTACAATAAGC------------ATTAAG s panTro1.chr19 32884775 541 - 82489036 TTATTAAAATGTTGATGTAATAAATGGGACTACCTAGTGCTGTGCTTTCTCCTTAAAGGAGAAAGCTGACAGAATACAACTAGCAGTAATAATCTGGTAAATTGTGCTTTCTACAGAGTAAATTTTGTTTGTCTCATGACATTTATGCAAATATT-CAAATGTTTCAGGAATATAAACATTTAAAATTTGGGTTATAAATAATGCCTCCTGGCT-----CTGAAATTATCTGAATTCATGAAGCAATCAGTAGTAAATATGAAGGAAAAATGAAACACAGCCTTATATGCAAGGAAAAGCACAAATTTCTAATTCTTGTTATAAT-----------------TTGGGTGCCCACCTGGTTTTGAAGGTGAGCCTTGGTTTGACTGGTTCTGAGAC------AGTTCTCTCAAATAGCAAATGAGTAGTGGGTATGAATAGG-GTACATTGGAAAGTCATGTCAAAATTCCATGTAATTTTTGGAGCGTTTTTTCTCCCATGTAATTTATATAATTTGACATGTGTATTCCTATGTAAAATATTTAACCACTTCTCTACAACAAGC------------ATTAAG s canFam1.chr9 28709929 557 + 53642819 TTATTAAAATGTTGATTGAATGAGTGGGACAACA-------GTGCTCTTTGAATAGA-AAGAAAGCTGACAGAATAAAACTAATAGTAATAATCTGGTAAATTGTA-TTTTTACAGGATAAATTATAGTTGTTTCATGACCTTTATACAAATATTCCAAATGTTCCAGGAATATAAACATTTAAAATTTGGGTTAAAAAGAATACCTGCTGGCCCTAAACTAAAATTATCTGAATCCATGAAGCACTCAGTAGAAAATGTGAAGGAAAAAGGAAACACAATCTTGTATGCAATGAC--TCGTAGATTCGTAAT--TTGTTATAATTAGCAGCTTTGATTAAATTTAGTGCCGAC---ATTTTGCAGATGAGCCTTGATTTGATTGGTTCTAAGACACTCAAATTTTTCATAAATAGCAAATACTTACT-GGTGTGAATAGGAAAACATGGTAAAATCATGAC-AAATTCCATGCAATTTTTGGAACTTTTT------CAAATAATTTGCGTAATTTA--ATATGTACTTCTACATAGCTTTTTTTTTTTTTTCTTTTGAGAGAGTGTGCATGTGCTGATTGAG a score=14191.0 s hg17.chr17_random 573291 69 + 2618010 TGGGCTAATTAGTATGCTCTTCTTATTCCATATTTCTGTGATTTCTCTTATCTGGAACGACTTTTTTAt s panTro1.chr19 32885316 69 - 82489036 TGGGCTAATTAGTATGCTCTTCTTGTTTCATATTTCTGTGATTTCTCTTATCTGGAATGACTTTTTTAt s canFam1.chr9 28710686 69 + 53642819 TGGGACAATTGGTTTGCTCTCTTCATTTTGTGTTTCTGTGATTTCTCTTATGTGGAGTGACTTTTTCTC a score=25066.0 s hg17.chr17_random 573360 265 + 2618010 gccacccaggctggagtgcagtggcacatttactgctcactgcagcctcaactccccagggtcaagccatcctcctatttcagcttccctagcagctaggactacaggtgtgcaccactatgccctgctaatttttgtgtttttttgtagagacggggttttgctatgttgccccggctggtcttgaactcctgagctcaagagatccacccaccgcaacctcccatagtgttgggattacaggcgtgagccactgcactcagct s panTro1.chr19 32885385 265 - 82489036 gccacccaggctggagtgcagtggcacatttactgctcactgcagcctcaactccccagggtcaagccatcctcctatttcagcttccctagcagctgggactacaggtgtgcaccactatgccctgctaatttttgtgtttttttgtagagacggggttttgctatgttgccccggctggtcttgaactcctgagctcaagagatccacccaccgcaacctcccaaagtgttgggattacaggcgtgagccactgcactcagct a score=43859.0 s hg17.chr17_random 573625 295 + 2618010 TCTTTTCTAATTTGTTTTTAttctgagatcagatgagatcggcatgttcaggttggtatggccatagacTGCTTTTATCTATTCTAATAATTTTGTATTGTACAATGTGTTGGAAAGGCAAGATGAAGTT-AGATTAT-GAAGGGTTCATTTCCATTCAATTCTGTCTATC--------CTTCTGGACTTTGCCT-AAATCTTACCTTCTTTGGAGCTTTCCTGAACTA------ACTTATCTCCTTTGAATTCTTAC--------ATTTGGATCCTTTGTATTTGAGTATTTTTACATATATATGTACATAAATAACAC s panTro1.chr19 32885650 298 - 82489036 TCTTTTCTAATTTGTTTTTAttctgagatcagatgagattggcatgttcaggttggtatggccatagacTGCTTTTATCTATTCTAATAATTTTGTATTGTACAATGTGTTGGAAAGGCAAGATGAAGTTGAGATTATAAAAGGGTTCATTTCCATTCAATTCTGTCTATC--------CTTCTGGACTTTGCCTAAAATCTTACCTTCTTTGGAGCTTTCCTGAACTT------ACTTATCTCCTTTGAATTCTTAC--------ATTTGGATCCTTTGTATTTGAGTATTTTTACATATATATGTACATAAATAACAC s canFam1.chr9 28710755 239 + 53642819 ---------------------------------------------------------------------TATCTTCATCTATTCTAATAATTTTATATTGTACAAAGTGGTGAACAGGAAAGATGAAGCT-AGATTAT-GAAGGGTTCATTTTCATTTGATTTTACTTATCTTTCTGGACTTCTAGACTTTATCT-AGATCTTACCTTCTCTGAAACATACCTGGACTATCCAGCACTTATCTCCTTTGAATTCCTATGACTCTTAGTTTGTATCCTTGGTATTTGAATATTTTTACATATACATGGTATT--------- a score=32480.0 s hg17.chr17_random 573920 184 + 2618010 GTTTTATGTGTAGTAATTTACTCTCCCAACTAGATTGAAAGCTGCTTGAAGAGTAACCTTTTTTTAAAGTCACATTGGACCGTTTTAAGTACAA------ATTTAGCATATGCTTGATGATTGAGAGAACCATATGGTTACAGTCATTGGTGTGTCT--ATGATTGTGATATGTTGCTATTT-------------AAAAATCAAT s panTro1.chr19 32886250 186 - 82489036 GTTTTATGTGTATTAATTTACTCTCCCAACTAGATTGAAAGCTGCT-GAAGAGTAACCTTTTTTTAAAACCACATTGGACTGTTTTAAGCACAA------ATTTAGCATATGCTTGATGATTGAGAGAACCATATGGTTACAGTCATTGGTGTGTCTGTATGATTGTGATATGTTGCTATTT------------TAAAAATCAAT s canFam1.chr9 28710994 199 + 53642819 GTTTTATGTGTATTAATTTAATCTTCCCACTTGATTTTAAGTTTCTTGAGGAGGAATCTTTTTTTAAA-CCACTTTGCATTGTTTTAAGTACAAATAGGTATTCAGCATATGCTTGATGATGGAGAGAACCAGA-----ACAGTTGTTGGTGCCTTTATATAATTGTGATGTGTTGttttttatttattttatttaaaaattttt a score=1201.0 s hg17.chr17_random 574104 13 + 2618010 AGTTATTTCTTAT s panTro1.chr19 32886436 13 - 82489036 AGTTATTTCTTAT a score=34830.0 s hg17.chr17_random 574117 175 + 2618010 TTAGTTTTCTGTTAAGCCATAACCTTTTGCTCTCATTTATACA---TCTTCTGAACGTTAAGTAACATGTGGCTCATATTTCAAACTCCCAATTTGGAAGTTTATAGCAATGTAACTGAAGTTTATAATTACAGGTCTCAGAAAACTGCACTACACAGAAGTTCTCTATGTGTTAGAA s panTro1.chr19 32886449 175 - 82489036 TTAGTTTTCTGTTAAGCCATAACCTTTTGCTCTCATTTATACG---CCTTCTGAACGTTAAGTAACATGTGGCTCATATTTCAAACTCCCAATTTGGAATTTTATAGCAATGTGACTGAAGTTTATAATTACAGGTCTCAGAGGACTGCACTACACAGAAGTTCTCTATGTGTTAGAA s canFam1.chr9 28711747 175 + 53642819 TTAGTTTTCTTTTAAGATATATCTTTTAACTTTCATTTTCATGTTTTCTTCTAAATGTT---TAACATGTGGCTCATATCTCAAACTCCCAATTTGTAAGTTTGTGGGAATGTGACTGAAAGTTAAAATTATAGGTCCAAGAGAACTGCATGGCATGGCAGTTCTATATGTGCTAGAA a score=25839.0 s hg17.chr17_random 574292 138 + 2618010 GAATTTATTAGAAGATAGACAATTGTAGGTTACACTGTAATTTAGAAGACTTTTGCGCATCTCATGTATGTGTGTCAGTTTGAGAATTTGAAAATGCCCCCAAAATGTCTGTTCTTCACTAGTGCCTCTTGTGATCCT s panTro1.chr19 32886624 138 - 82489036 GAATTTATTAGAAGATAGACAATTGTAAATTACACTGTGATTTAGAAGACTTTTGCGTATCTCATGTATTTGTGTCAGTTTGAGAATTTGAAAATGCCCCCAAAATGTCTGTTCTTCACTAGTGCCTCTTGTGATCCT s canFam1.chr9 28712110 137 + 53642819 GAATTTATTAGAAGTTAGACAATTGTAGATTGCAAAAGAATTTAGGAGAGTTTTGCTCATCTT-TATGTATTTGTCAGTTTGAGGATGGGTGAATGCACCCAAGATGACAACTGCTTATCAGTATCTCTTGTGATTCT a score=10890.0 s hg17.chr17_random 574430 118 + 2618010 GGCAGAGATAAGCTAAACTTTTGAAAGGGTAGACTTTTTCTGTTTATCTTAGTATCCTGAGTCCCTAAATCTGGAATGTAGTAGATGTTTGTGCATTTCCCTATGTCAGCGAAGTCAA s panTro1.chr19 32886762 118 - 82489036 GGCAGAGATAAGCTAAACTTTTGAAAGGGTAGACTTTTTCTGTTTATCTTAGTATCCTGAGTCCCTAAATCTGGAATGTAGTAGATGTTTGTGCGTTTCCCTATGTCAGTGAAGTCAA a score=1676.0 s hg17.chr17_random 574548 7 + 2618010 AATACTA s panTro1.chr19 32886880 7 - 82489036 AATACTA s canFam1.chr9 28712247 7 + 53642819 AATATTA a score=13825.0 s hg17.chr17_random 574555 158 + 2618010 GAGGTGGATTTTTCAGCTTTTCAAAGTTTTCACATTTACTAAGTCCTTCACAGTTATCGCCTACTAGTTAAAAAACTATTTGCCTCAATTTAGGCCAGTGCTACTTTGACATTTGCATTGCTGTAAAACCCTTACTAAAAGGTATATTTTTCTGGTAT s panTro1.chr19 32886887 158 - 82489036 CAGGTGGATTTTTCAGCTTTTCAAAGTTTTCACATTTACTAAGTCCTTCACAGTTATCTCCTACTAGTTAAAAAACTATTTGCCTCAATTCACGCCAGTGCTACTTTGACATTTGCATTGCTGTAAAACCCTTACTAAAAGGTATGTTTTTCTAGTAT a score=37976.0 s hg17.chr17_random 574713 288 + 2618010 ATAAATACATGTATGCAGCTTTTCTCATATCTTTGAGAAAGCA---AAAAATTGTACTAAATTATGATTTCCACTGTAATAGGATTATGGCTTAGTCATGATCAGTATTATGTTTTCAGCTATGTCTTACTAGGATTATTGTAAAAGACTTTCAAAATAGTTCATGTGAATCTTTGTCTGATCTTCACAAACTCGGGTATGTACATAGCTCTCCCCCACCTTCTCCTGGCTTTGGCAATTTACTTTAtttttatggtggt--------------------------tatatatatatatatataaaacataccattt s panTro1.chr19 32887045 314 - 82489036 ACAAATACATGTATGCAGCTTTTCTCATATCTTTGAGAAAGCA---AAAAATTGTACTAAATTATGATTTTGACTGTAATAGGATTATGGCTTAGTCATGATCAGTATTATATTTTCAACTATGTCTTACTAGGATTATTGTAAAAGACTTTCAAAATAGTTCATGTGAATTTTTGTCTGATCTTCACAAACTCAGGTATGTACATAGCTCTCTCCCACCTTCTCCTGGCTTTGCCAATTTATTTTAtttttattgtggttatatatatatatatatatatatatatatatatatatatatatagaacataccattt s canFam1.chr9 28712254 236 + 53642819 ACAAATAAGTAAATATGCCTTTTCTTATATATATGAGAGAAAAAGCAAAAATTGCACTAAATTATGATTTCTG---------------------------------ACTGTATTTTCAACCATATATT-TTAGTATTGTTATAAGGGGTTTGTGAAATATTTCATGTGAATTTTTGACTGATTCTCACAAGTTCAGGTATATACATACTTTTA--------TTTTCTGGCTTTAG---------TTATTACTGTGGTAGAT-------------------------TATACATA-----AGATGAAATTTATTGTTT a score=564.0 s hg17.chr17_random 575001 6 + 2618010 accatt s panTro1.chr19 32887359 6 - 82489036 accatt a score=122361.0 s hg17.chr17_random 575007 724 + 2618010 tgaactattttaaaaagtgtacaatt-agtggcatgaagtacattcacaatattgtataaccatcaccactgtccatttccagaacttgttcatcatcccaaacagaaattctcta--------------tcccttttcttcc---------ccagcccctggtaacctctattctactttctctttttatgaatttgcctattctagacacttcatggaaatagaatcaaacaatatttgacctttctta---tttcacttaggataatgttttcaaggtttatccatgttgtagtacatagcagaatttaatttctttttttgactgaataatttgtatatactacatcttgtttatacatccatctgttgatgggacatatttgggttgttt-ccaccttttggctattgtgaataatgttgctgtgaacactggt-gtgcaaatatctatctgagtc-ctgctttcacttcttttggatataaacctaggaatggaattgctgggtcatatggtaattctatatttaaccttttaaggaacagctaacctggtttccacggcttctgtaccattttatatttctaccagcaatgcacaagtgctccttccattttctccatatctacccaatacttgttattttctgttttctttcaattaataaccatcctaatgggtgtgacatagt-----attgtcattttgatttttagcttcctaatggctagtgctaatgagcattttttt-atgtgct s panTro1.chr19 32887365 723 - 82489036 tgaactatttaaaaaagtgtacaatt-agtggcatgaagtacattcacaatattgtataaccatcaccactatccatttccagaacttgttcatcatcccaaacagaaattctcta--------------tgcctttttttcc---------ccagcccctagtaacctctattctactttctgtttttatgaatttgcctattctagacacttcatgtaaacagaatcaaacaatatttgacctttctta---tttcacttaggataatgttttcaaggtttatccatgttgtagtacatagcagaatttaatt--tttttttgactgaataatttgtatatactacatcttgtttgtacatccatctgttgatgggacatatttgggttgttt-ccaccttttggctattgtgaataatgttgctgtgaacattggt-gtgcaaatatctgtctgagtc-ctgctttcacttcttttggatataaacctaggaatggaattgctgggtcatatggtaattctatatttaaccttttaaggaacagctaaactggtttccacagcttctgtaccgttttatatttccaccagcaatgcacaagtgctccttccattttctccatatctacccaatacttgttattttctgttttctttcaattaataaccatcctaatgggtgtgacatagt-----attgtcattttgatttttagtttcctaatggctagtgctaatgagcatttttttaatgtgct s canFam1.chr9 28712624 724 + 53642819 TGagccatttt--aaattgtataattcagtggcattaagtacattcatga---tgtgtggtcatcgccaatattcatttctagaacttgcttattgtccctaccagaaactgtgtaatccctaaataacttcccattttctctcccctcttgccagtccctggtaacctccattctacttttt-ttcctctgaatttgcctattttaggtacctcatataagtaaaatcatacattatttatccttttgtgtctttccacttag---catgttttcagggttcatccatgttgtagcatgtagcagaatttaatt-ccttcctatactgagtaatgtgtgtataccatattttgtttatccattcatctgttact---atacatttggatcatttcccacctttttgctattgtgaataatgctattgtggatattgataatacaaaga----tctgagtctctgctttcagttcttttaaatgtatgcctagaagtagaattgctgggtcatatggtaacttgatgtttaaca----gaggaactaccaaaatgttttccaaagtggctgcactattttacacgcttaccagtcatgtatgagggtta--tgatttttctacatgcttgcct-acacttgttatgtt---tcttattt-------tagccatcct-gtggttgtgaaatagtatctcattgtagttttgatttgtgtttccttaatggctagtgatgttgagcgtgttttc-ctatcct a score=23734.0 s hg17.chr17_random 575731 276 + 2618010 attggtcatttgtatgtcttttttggagaaatgtctgttcaatcctttgcccatttttgaattgagatgtgcgcttttttgttgttgagttgtagttctgtagttctttatacattctggatattattctcacatcagatatatgatttacaaatattttctcccaaatacttctgtgggttacagatatatta--atatctgtagattgtctttcatggtcttgataggatcttttaatgcccaaaagtttttaattttgatgaaataatgtatgta s panTro1.chr19 32888088 277 - 82489036 attggtcatttgtatgtcttttttggagaaatgtctattccatcctttgcccatttttgaattgagatgtgtgcttttttgttgttgagttgtagttctgtagttctttatacattctggatattattctcacatcagatagatgatttacaaat-ttttctcccaaatatttctgtgggttACAGATATATTAATATAtctgtggtttgtctttcatggtcttgataggatcttttaatgcccaaaagtttttaattttgatgaaataatgtatgta a score=8853.0 s hg17.chr17_random 576007 59 + 2618010 gttttGAACTTAAACAATGTTACAGATTGCGCAAAGGATATAACCATGAAATTCTGATG s panTro1.chr19 32888365 59 - 82489036 gttttGAACTTAAACAATGTTACAGATTGCACAAAGGATATAACCATGAAATTCTGATA s canFam1.chr9 28716422 53 + 53642819 GTTTTGAATTTAA-----GTTTTAGATTGTGCCAA-GATAAATCCACAGAGCTCTGAAA a score=55333.0 s hg17.chr17_random 576066 315 + 2618010 GAGTGACCCCACAGCTGCAGAAAACC-----AGAAAGAACCCTAC-TCTAAAACCCAAAAGACTTCCCT-------AGATAGAGTCCTTTGAAAATAATTTTCTAAATTATTCACACAGCCTGTGGATAAATTAAGAGGAAATGATATCTGT---AACAGTGCTGCTTGTGATGAAAACACAGAAGAGTCAATTATATTATCAAATCTTAGCTGGAATGGAAAATCAGGAGGATATTTATTAGCAAACATTAATAAAAGGTTGGCCTTTATTATTGTAAGCATGTACACAGACGACAGCATGTAGTCTCTACCATAAGAATGAGAAATGCC s panTro1.chr19 32888424 320 - 82489036 GAGTGACCCCACAGCTGCAGAAAACCAGAATAGAAAGAACCCTAC-TCTAAAACCCAAAAGACTTCCCT-------AGATAGAGTCCTTCGAAAATAATTTTCTAAATTATTCACACAGCCTGTGGATGAATTAAGAGGAAATGATATCTGT---AACAGTGCTGCTTGTGATGAGAACACAGAAGAGTCAATTATATTATCAAATCTTAGCTGGAATGGAAAATCAGGAGGATATTTATTAGCAAACATTAATAGAAGGTTGGCCTTTATTATTGTAAGCATGCACACAGACGACAGCAGGTAGTCTCTACCATAAGAATGAGAAATGCC s canFam1.chr9 28716690 323 + 53642819 GATTGACCTCATAGTTGCAGAAAACCAGGGCAGAAAGCACCCTACTTCCTATACTCAGAAGGTCCCCCCTCCCCTAAAAGAGAATCCTTTAGAAGTAATTTTCCAAATAATCCACACAGCTCATGGATAATTAAGAAGCAAACAATACTCATAAAAACAGTGCTGTCTGTAATGAAAGCACAAGAGAGCCAGCTTTATTATTGAATTTTAGCCAGGGTGGAAAGTCAGG------CTATTTGAGGAATGTCA--AAAAGATTGGCTTCTCTCACTGCAAACACATACACAAATGGTAGCAGGTAGTATCTGTCTTGAGAATGAGAAGTGCC a score=30651.0 s hg17.chr17_random 576381 205 + 2618010 TCCTATCTTT---ATGCATTCTGAAATTTAACCTTTCTTAACCCAATTGCTGTAAGGGCCTAGGGTTTATTTGT------TATGTGTGTTATTGGAGTAGAGACTGTTTGAAGGTTAAGGGGGTATTTAGTGATGCAAGTGACATTTATATGTTTTAAAATCTTCTGCTTTTCTAGGCACTTTTAAAAATGAAATGCTATATTTTTAAACTTTT s panTro1.chr19 32888744 205 - 82489036 TCCTATCTTT---ATGAATTCTGAAATTTAACTTTTCTTAACCCAATTGCTGTAAGGGCCTAGGGTTTATTTGT------TCTGTGTGTTATTGGAGTAGAGACTGTTCAAAGGTTAAGGGGGTATTTAGTGATGCAAGTGACATTTATATGTTTTAAAATCTTCTGCTTTTCTAGGCACTTTTTTAAATGAAATGCTATATTTTTAAACTTTT s canFam1.chr9 28717216 194 + 53642819 CCGTGTGTCTCCCATAAATTCTGAAATTGAACCTTTGTTAACCTAAGTGCTATGGAGGCCTAAAGCTTACCTACGTGTTATATATATACTGCTGGAGTAGAGATTGCTT----------------CTTAGTGATGCAAATGAC----ATATGTTTTAAAATCTTTTGTTTCAGTAGACACTCTTTTAAAGAAAGGTTTGCCTGTGTGTTTTTTT a score=13255.0 s hg17.chr17_random 576586 145 + 2618010 AAAAATTatttttattattttttgcagagatgaggtcttgctgtgttgcccaagctgttctcaaactcttggcctcaagagatcctcctgccttggcctcccaaagtgctgggattacaggcgtgaaccacgtgcctggccCAAA s panTro1.chr19 32888949 145 - 82489036 AAAAATTatttttattattttttgcagagatgagctcttgctgtgttgcccaggctggtctcaaactcttggcctcaagagatcctcctgccttggcctcccaaagtgctgggattacaggcgtgaaccacgtgcctggccCAAA a score=47244.0 s hg17.chr17_random 576731 262 + 2618010 CTTTTTAAAGACTTTATTTCTGGAGGCAGGTTCTCAAAAGATATCCTATCTTAATGGGCATATATAGAGAGAGAGTAGTAGGTGAGTTTAAGGGGGATGTAAATATTGGCCGAAAGAGGTTTC-TTTTAGGTATATAACCCCTCAAATGTAGCCCTTTGGATATCAAAAGTTTATTATGGCAATGTTCTTTGTGCATTTTTATTCGATGTTGTCAGCCATTCATCTAATAACTCT-TCAGAAGATTTTGTCTCTGGGCAGTGGC s panTro1.chr19 32889094 262 - 82489036 CTTTTTAAAGACTTTATTTCTGGAGGCAGGTTCTCAAAAGATATCCTATCTTAATGGGCATATATAGAGAGAGAGTAGTAGGTGAGTTTAAGGGGGATGTAAATATTGGCTGAAAGAGGTTTC-TTTTAGGTATATAACCCCTCAAATGTAGCCCTTTGGATATCAAAAGTTTATTATGGCAATGTTCTTTATGCATTTTTATTCGATGTTGTCAGCCATTCATCTAATAACTCT-TCAGAAGATTTTGTCTCTGGGCAGTGGC s canFam1.chr9 28717410 251 + 53642819 TTTTTTTACAGTATACTGTCTGGGGGTAGGTTCTTTAAAGTTATCATACCTTAATGGATGTATAT------AGATTAATAGGTGAGTTTAAGGGGGTGATAAATACTGGCTGTATCACTTTCCTTTTTAGCTATGTAATCCCTTAGATGTAGTCCTTTCCAAATCAAAATTTTATTAGAGCAGTGTTC--TATGCATTTTTAATAGAGGTTATCAGTCATTTATTTGATAATTCTCCCAGAAGATTTT-----TTGGCAGTGGC a score=14226.0 s hg17.chr17_random 576993 82 + 2618010 ATTTTATAACTTCCTATATGGAAGAAAACTTTTATCC--AACTGATAACTGATATGCCAATGTGTTAGTATGAAAAAATTTTCC s panTro1.chr19 49334814 82 + 82489036 ATTTTATAACTTCATATATAGAAGAAAACTTTTATCC--AACTGATAACTGATATGCCAATGTGTTAGTATGAAAAAGTTTTCC s canFam1.chr9 28717661 81 + 53642819 TTTTTGTAACATCATATATTGGAGATAACTTTTATTCTAGACTGGAAGCTGATATGC---TCTATTAGTCTGAAAATTTTTTCC a score=29761.0 s hg17.chr17_random 577075 326 + 2618010 CAACATTCTTAccaggtgtggtggctcaacctgtaatcccagcactttgggaggtggagtcgggcggatcacttgaagtcaggagtttgagaccagcctggccaacatggtgaaaccctgtctactaaaaatacaaaaattagctgggcgtgatggcaggcacctgtaatcccagctacctgggaggctaaggcaggagaattgcttgaatctaggaggtggaggttgcaatgagccaagatttcctcactgcactctagcctgagcgacagagtgagactctgtctcaaaaaaaaaagaaaaggaaaaaaaaagaaaATTTCCCA s panTro1.chr19 49334896 326 + 82489036 CAACATTCTTAccaggtgtggtggctcaacctgtaatcccagcactttgggaggtggagtcgggcagatcacttgaagtcaggagttcgagaccagcctggccaacatggtgaaaccctgtctactaaaaatacaaaaattagctgggcgtgatggcaggcacctgtaatcccagctacttgggaggctaaggcaggagaattgcttgaatccgggaggcagaggttgcaatgagccaagattgcctcactgcactctagcctgagcgacagagtgagactctgtctcaaaaaaaaaagaaaatgaaaaaaaaagaaaATTTCCCA a score=30844.0 s hg17.chr17_random 577401 241 + 2618010 AAATTCAAATGTCGTTTCACTGCGTGGCTTTGTTTGATTATTAATACTTTAATACTGTGtttaaaattaatatttattatttttaaaaatCAGCTTCCTTAGGTCGAAGAAACATTAATGTTTAATATTAAGCTATTATTGTAGCTTAGTGTAGTTATAATAAGATACTGGAACTCATGGAAGGGGTTAGATTTTCTTCATCTTAGAAACCGTTACTTTTCATAAAGTATATATTGTGCaa s panTro1.chr19 49335222 241 + 82489036 AAATTCAAATGTCATTTCACTGCGTGGCTTTGTTTGATTATTAATACTTTAATACTGTGtttaaaattaatatttattatttttaaaaatCAGCTTCCTTAGGTTGAAGAAACATTAATGTTTAATATTAAGCTATTATTGTAGCTTAGTGTAGTTATAATAAGATACTGGAACTCATGGAAGGGGTTAGATTTTCTTCATCTTAGAAACCGTTACTTTTCATAAAATATATATTGTGCaa s canFam1.chr9 28717742 173 + 53642819 ATATTTGAACATTGTTTAATTTACTGGCTTTAATTGATTACTAAAACTTTAATGCT-----------------------------------------------------AAACATTAATG-TTATTATTGACATATTA---TAACTTAGAGCAGTTAGAGT----------ACTCCAAGAAAGGAATTAAATTTTCATC-TTTTAGAAGTTGTTATTTTTTATAGAGAGTATAATTGACAA a score=60682.0 s hg17.chr17_random 577642 665 + 2618010 ttatatataaaattatataataattagatatacaaataaaaaatCGGATTATAGTTgggctcagtggctcgcatttgtaatctcagctccttgggaagcttagactggaggatttcttgagtccagaaatttgaggctgcagtgagccatgattgtgccactgcattccagcctgggcgacaggaatgagaccccgtctctaaaaataaaaactaaaaaaaaATAGATTATGATTGGCAAAAGATTGAGTGACAGTGAAAATGCAATGAATATTTTGACTACTATTTTTTGATTACATACATAGGAAGATACGAATTTTTCTGTCTTTCCAAATTAGTTTAGAAATTAAAGATTTggccgggcatagtggctcacccctgtaatctgagcactttgggaggctgagataggcagatcacctgaggtcaagagtttgagaccaccctggccaacatggtgaaacctcgtctctactaaaaatacaataaaaattagctgggcatggtggcatgcacctgtagtcccagctacttggggagactgaagcaggagaatcacttgaacccaggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctgggcgacagagcgagactctgtctcaa----aaacaaacaaacaacaacaaaa s panTro1.chr19 49335463 669 + 82489036 ttatatataaaattatttaataattagatatacaaataaaaaattGGATTATAGTTgggctcagtggctcgcatttgtaatctcagctccttgggaagcttagactggaggatttcttgagtccagaaatttgaggctgtagtgagccatgattgtgccactgcattccagcctgggcgacaggagtgagaccccgtctctaaaaacaaaaactaaaaaaaaTTAGATTATAATTGGCAAAAGATTGAGTGACAGTGAAAATGCAATGAATATTTTGACTACTATTTTTTGATTACATACATAGGAAGATACAAATTTTTCTGTCTTTCCAAATTAGTTTAGAAATTAAAGATTTggccgggcatagtggctcacccctgtaatccgagcactttgggaggctgagacaggcagatcacctgaggtcaagagtttgagaccaccctggccaacatggtgaaacctcgtctctactaaaaatacaataaaaattagctgggcatggtggcatgcacctgtagtcccagctacttggggagactgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctgggcgacagagcgagactccatctcaaaaacaaacaaacaaacaacaacaaaa a score=9064.0 s hg17.chr17_random 578307 44 + 2618010 CACCAGAAAAAGGAAAAATAGTGTTAA-----GAGATAACTTAGTATGT s panTro1.chr19 49336132 44 + 82489036 CACCAGAAAAAGGAAAAATAGTGTTAA-----GAGATAATTTAGTATGT s canFam1.chr9 28718287 49 + 53642819 TAATAGGAAAAGGAGAAACAGTGTTAACCACGGAGATAATTTAGTGTGT a score=13901.0 s hg17.chr17_random 578351 78 + 2618010 ATTGTTTGTACACTTCATGGGTGTGCATATATGACGTGTTTGGTTTTATAGTGAAAATTCTAACATTCTGCTGTATGG s panTro1.chr19 32889356 78 - 82489036 ATTGTTTGTACACTTCATGGTTGTGCATATATGACGTGTTTGGTTTTATAGTGAAAATTCTAACATTCTgctgtatgg s canFam1.chr9 28718336 75 + 53642819 ATTATTCATACACTTCATGGGTTTGTATACAT---GTTTATGGTCCTAAAATGCAAATTCCGACATTGTGTTATATAA a score=16501.0 s hg17.chr17_random 578429 116 + 2618010 TTTATGGTGCATTGTAGACGTTCCTTTAAGCACTCAATGATAAAGATTAAAATTACTAAGATAGAGAGTAAATCTATGTTATATGTagtcatttctcagtttgcatagtagtatgg s panTro1.chr19 49336254 116 + 82489036 TTTATGGTGCATTGTAGACGTTCCTTTAAGTACTCAATGATAAAGATGAAAATTACTAAGATAGAGAGTAAATCTATATTATATGTagtcatttctcagtttgcatagtagtatgg s canFam1.chr9 28718411 105 + 53642819 TTTACAGTACATTATAGATGTTCCTTTAAATGCCCAATGAT----------ATTTATGTGGTATGGtataatttttatttttatctatttattt-ttaGTTTtttttttggtatgg a score=11681.0 s hg17.chr17_random 578545 139 + 2618010 gactgtaaaaatgaccatgcaagctaagactattcaaagggatcacagtaatcagtggaaaaaattgtgattgttctgttggacctttaaaaatttttgtcaaaacattaaaaactctctcacagttggttatagatat s panTro1.chr19 49336370 139 + 82489036 gactgtaaaaatgaccatgcaagctgagactattcaaagggatcatagtaatcagtggaaaagattatgattgttctgtgtgacctttaaaattttttgtcaaaacattaaaaactctgtcacagttggttatagatat a score=55452.0 s hg17.chr17_random 578684 325 + 2618010 acagggtaagaagaaGCGTGGTATCCACAGAGAAGGAGGGAGCTTCATAAACAAAGACAAACAGGAATATCAACTACCAGCCACCAACAGCACTCTTGTAAAACTTATTTAAATATTACAAAAAACAATATACAAGATTACTA--AGAGATTGGAAGATAAAGGGAGAAAATTTCACTAATGATCTCATCACCAAACACAGTTAATTATTTGCTGTTACTCTTTTATCAAATTAGTGTTTAG------TATTGTTTTAATCATAATGTACATACAATTTTGTATCTTGCTTTTTCTGAGATGTCTGTTTCTGTCCATGTTATACATACCTATA s panTro1.chr19 49336509 324 + 82489036 atagggtaagaagaagcatggtaTCCACAGAGAAGGAGGGAGCTTCATAAACAAAGACAAACAGGAATATCAACTACCAGCCACCAACAGCACTTTTGTAAAACTTATTTAAATATTAC-AAAAGCAATATACAAGATTACTA--AGAGATTGGAAGATAAAGGGAGAAAATTTCACTAATGATCTCATCACCAAACACAGCTAATTATTTGCTGTTACTCTTTTTTCAAATTAGTGTTTAG------TATTGTTTTAATCATAATGTACATAAAATTTTGTATCTTGCTTTTTCTGAGATGTCTGTTTCTGTCCATGTTATACATACCTATA s canFam1.chr9 28723087 319 + 53642819 ACATTGCAAGAAGTAGGGTGGTATCCATAG---AGGAGGGAGCATTATAAGTAAAAGCAGATAAGAATGCCAGCAAACA---ACTAACAGCACTTTTGTAAAATTTGTTTAAAAAGTAT--AAAGCAATATAACAGTATTTTACCAGGGATTCGTTGGGAAAGGGAGAAAAT----CCACTAATCCTGTCACCTA--ACAGCTGATTATATGCTTTTATTTCTTTTTCTCATAAATGCTTTATCTTTTTATTGTTTTAATCATAATATACCTACAATTTTGTATCTTTTTTTTTCTGAGGTACCtatttttatcagtgttatatattcatata a score=17896.0 s hg17.chr17_random 579009 203 + 2618010 cagtcctgtgctgcatgatgatgttttggttaacgatggactgcatacacaactgtgatcccataagataatagtagagctgaaaaattcctattgcctagtgacattgtagccatTTACTTGTTTTTGCTTTCTGCTTTTtttatgtagtcatttactatactaaacctttaatcattattttagagtatactc---ctatttat s panTro1.chr19 49336833 206 + 82489036 cagtcatgtgctgcatgatgatgttttggttaacgatggactgcatacacaactgtgatcccataagataatagtagagctgaaaaattcctattgcctagtgatattgtagccatTTACTTGTTTTTGCTTTTTGCTTTTtttatgtagtcatttactatactatacctttaatcattattttagagtatactccttctatttat a score=446488.0 s hg17.chr17_random 579212 5012 + 2618010 ttagaaaGGTCCCCC-AAGGGAGGACAGAAA------------ACACTCATAATTTAATGTTATTGTCCTTTTCACACATATGTAGCTATATCTATTATAttttattttactttattttattttaatttttgagacagagtttcactctgtcacccaggctggagtgcaatggtgcagtctcagctcactgtgacctccacctcccaggttcaagcaattcttctgcctcagcctcccgagtagctgggattacagatgtgcaccaccatgcctagctaatttttgtatttttagtacagacgaggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacctgccccagc-ctcccaaagtgccgggattacagcacttttacagcatgagctgccatgcccagcctattttattttattttgttttattttattAgagacagtcttgctctgtccccaagcctggagtgcagtggcgtgatcgtagctcacttggctaatttttaaactttttgtagatatggggtctgggtatgttgcccagcc-tgatcttgaactcctagg--cttaagtgatcctcctgccctgacctcccaaagtgctgggattacaggcgtgagccatcctgcccagccTGTATCTATTATATAAGCTGGTTTTTTTG--ATTACTTTAATGTAAAtgagattataccatactctcttctctgtcacttcctattttcatgtaatttatgttagacatctgtcaatgtcagtataaataggtctagatcattttttatagttgtatacctttcattacttggatgtttcacaatttacttagctaactacctattgttggacatttggttatttccaaatttttgctgttttatataatgctgcgCTTATATAAAATATAGTTCTATATAATTATGTTTAATTATGTACTACCGCtgtatctgacaactgacttgtatcaagaacatacaaagaactgttacaaGTTgccaggcagagtggctcatgtctgcaatcccagggctttgggaggccaaggtgggcggatctcttgagcccaggagttggagaccagcctgggcaacatggggagaccccgtctcgacaaaaatacaaaaattagccaggcataggggcacacatctgtagttccagctacttagaggctgaggtgggaagactgcttgagcccaggaagttgaggctgcagtgagccaagatgacaccacggcactccagccagcgcgtcaaaggccctgtctcaaaaaaaaggaagaaGCGGGGGCGGCAAATAAGTAGAGTATAAGCCACCTCATCCAACTTTATTGGAACCAGTAGTTGACTGGTTAATCAGTCCAAGCAAGGAAGCATAAAAACTGATGCATGTgccgggcatggtggctcacgcccgcaatccccgcactttgtgagaccgaggcgggccgatcacctgaggttaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaagttagccatgcatggtagtacacgtctgtaatcccagctactcaggaggctgaggcaaaaaaaGGAGAAGAAATgctatgtgaagcctttttataagcacattaatttcattcacgagggcagagcactcatgacctaatcaccaccttgaaagcctcacttcttaacatcatcacattaggtcttaggttataacatgaattttggaggACTCCAGAAAaaaaaagtgaaagacaacccacagaatgggagaaaatacttgcaaattatGTACAAAGTAGGATCACTTTATTTGTGGAAAatatgtagccagacacagtggctcatgcctgtaatcccagaactttggaaagctgaggtgggaggatcacttgagcccaggagctcaagactaacctgggcaacatagggataccctatctctacaataaataaataaaattacccagatgtggtgacatgtgcctgtggtcccagctacttgggaggttgaggtgggagaatcacgtgagcccaggaggttgaggctgcagtgagccaagataacattaatgtatcccagcctgggcgatagaccgagaccttatctcaaaaaaaaaaaaaaaatatatatatatatgtatatatttatctat-----tacctatatattcatatatagatatagattaatatagatatataaacatatatttatagatatatagatacataaatatatagctatatataaatatatatttataaatatatagatatatatgtaACAAAatatgttccaagacctccagtgtatacctgaaactgcagatagtaccaaactctatatgtactatgtttttttcctatacatacatacatacctatgatgaagtttaatttataaattaggcactgtaatagaataacaacaataactaataataaaagagaacaattagaatatactttttgtttttgagatggagtcttgctctgtcacccaggctggagtgccatggcgccatctcggctcactgcaacttccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggcctacaggcacctgccaccacgcccggctaatttttgtatctttagtagaggcagggtttcaccatattggccaggctggtctccaattcctgaccttgtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgtgcccggctagaatatactttaacataagttacatgaatagttttctctctctcaaaatactgtaatatttggg-attgcagctgcccgcaggtaactgaaactgcagagagCATACGGGAGACTACAGtatctgacaatggacttggatctagaatacataaagaactcttacaacttgataataaaaaggatataacccaattttaaaatggacaaaagatctgaacagatatttctccaaagaagacatacaaatggccaataagggccaggtg--gtggcttatgcctataatcccaacactttgggaggccaaggcaggtggatcacttgaggccagaagttcaagaccagtctggccaacatggcgaaaacccatctctactaaaaatataaaaatcagccaggcgttgtggcgcatgcctgtagtcccaggtactcaggcagatgaggcacaagaatcactcgaacccgggaggcagaggttgcaatgagctaagattgcaccactgcactccagcctgggcaacagagcaaaaccccacctaaaaataaataaataaataaaaataaaaaaaagaaaataaatggccaataagcacaagaaaatacactcaatttctgtcttagtctgtttgtgctgctataacaaaatacctgagactaagtaatttataagtaaaaaaatttattcctcacagttccggaggctgggaaaaccaaaatcaaggtgatagcacatttggcatttggtgagggcctgttccattgttcccgttctcgcagtggcatcttcacatggcaggagaagaaaggaaaaaagaagaagaaatgttatgtgaagcctttttataagggcattaatttcattcacgagggcagagccctcatgacctaatcaccaccttgaaggcctcacttcttaacatcgtcacattaggtcttaggttataacatgaattttggaggactccaacattcaaaccatagaaacatcattagccatcagggaagtgcaaatccaaaccatgttaagataccacttcacactcacaagaatggctataataaacagacacataataacaagtgttggagaaaatgtggaaaaattgaaacactcatatgttgctggagggaatgtaaaatgctttgcaatgaagttggaactgctttggaaatagtctggca-gttcctccaaagcttaaacatagagttatcatatgacctgg-caatgccaggcttcatcatattcccaagggaaaggaaaacatatgtccacacaaaaacttacacatgaatgttcatagcagcattattcataatagtcaaaaagtggagacagctgggtgtggtggctcccaacactttgggaggccaaggcgggaggattgcttgaggtcaggagttcgagaccagcctggccaacagagtgaaatccgatctctactgaaaatacaaaaatcagcgggacatggtatacgtgcctgtaatcccagctacttgggaggctgaggcaggtgaatggcttgaatccaggaggcggaggccgcagtgagccaagatcacaccaccgtactccagcctgagtgacagactgagactccatctcaaaaaaaaaaaaaaaaaaagtgataaacagataaatgaaatgtgttatattcctacaacagaatattattgagccataaaaaaaaaggaaataagtactgacacatgctataacatgaatga-accttgaaaacatt-aggttacttgaaaaaagccagtcacaaaagatcacaaattgtatggttccatttatatgaaatgtccaaataggcaaatcctatcctaaaagaaagtaaattagtggttgcctaggactgagggatggagaaaatggggagtgactgctcataggtatggtattttttttttgagagaaatgaaaatattctaaaattgattgtggtggccaggcacaggggctcacgcctgtaatcccagcactttgagaggccgaggcgggcggatcacctgaggtcgggagttcgagactagcctgaccaacatggagaaaccccccctctactaaaaatacaaaattagccgggcatggtggtgcatacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccagggaggtggaggttgcagtgagctgagatcgtgccactgcactccagtctggcgagagagtgaggctccatctcataaaaaaaaaaaaaaaagaaagaaagaaa s panTro1.chr19 35001202 5011 - 82489036 TTAGAAAGGTCCCCCCAAGGGAGGACAGAAACAGCAACAGAAAACACTCATAATTTAATGTTATTGTCCTTTTCACACATATGTAGCTATATCTATTATAttttattttactttattttatttt------tgagacagagtttcgctctgtcacccaggctggagtgcaatggtgcagtctcagctcactgtgacctccgcctcccaggttcaagcaattcttctgcctcagcctcccgagtagctgggattacagatgtgcaccaccatgcctagctaatttttgtatttttagtacagacgacgtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacctgccccagcgctcccaaagtgccgggattacagcacttttacagcatgagctgccatgcccagccTATTTTAttttgttttgttttattt----agagacagtcttgctctgtccccaaggctggagtgcagtggcgtgatcgtagctcacttggctaatttttaaactttttgtagatatggggtctgggtatgttgcccagccctgatcttgaactcctaggggcttaagtgatcctcctgccctgacctcccaaagtgctgggattacaggcgtgagccatcctgcccagccTGTATCTATTATACAAGCTGTTTTTTTTTTTATTACTTTAACGcaaatgagattataccatactctcttctctgtcacttcctattttcatgtaatttatgttagacatctgtcgatgtcagtataaatacatctagatcattttttatagttgtatacctttcattacatggatgtttcacaatttactttgctaactacctattgttggacatttggttatttccaaatttttgctattttatataatgctgcACTTGtataaaatatagttttatataattatgtttaattatGTACTACTACtgtatctgacaactgacttgtatcaagaacatacaaagaattgttacaaGTTgccaggcagagtggctcatgtctgcaatcccagggctttgggaggccaaggtgggcggatctcttgagcccaggagttggagatcagcctgggcaacatgggcagaccccgtctcaacaaaaatacaaaaattagccaggcataggggcacacatctgtagttccagctacttagaggctgaggtgggaagactgcttgagcccaggaagttgaggctgcagtgagccaagatcacaccacggcactccagccagcatgtcaaaggccctgtctcaaaaaaa-ggaagaaGCGGGGGAGGCAAATAAGTAGAGTATAAGCCACCTCATCCAACCTTATTGGAACCAGTAGTTGACTGGTTAATCAATCCAAGCAAGGAAGCATAAAAACTGATGCATGTgccgggcatggtggctcacgcctgcaatccccgcactttgtgagaccgaggcgggccgatcacctgaggttaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaagttagccatgcatggtagtacacgtctgtaatcccagctactcaggaggctgaggcaaaaaaaGAAGAAGAAATgctatgtgaagcctttttataagcgcattaatttcattcacgagggcagagccctcatgacctaatcaccaccttgaaagcctcacttcttaacatcatcacattaggtcttaggttataacatgaattttggaggactcaaGAAAaaaaaagtgaaagacaacccacagaatgggagaaaatacttgcaaattatataCAAAGTAGGCCCACTTTATTTGTGGAAAatatgtagccagacacagtggctcatgcctgtaatcccagaactttggaaagctgaggtgggaggatcacttgagcccaggagctcaagactaacctgggcaacatagggataccctatctctacaataaataaataaaattacccagatgtggtgatatgtgcctgtggtcccagctacttgggaggttgaggtgggagaatcacgtgagcccaggaggttgaggctgcagtgagccaagataacattaatgtaccccagcctgggcgatagactgagaccttatctcaaaaaaaaaaaaaaaatatatatatatat--atatatttatctatctatctatctatatattcatatacagatatagattaatatagatatataaacatat--ttatagatatatagatacataaatatatagctatatata----tatatttataaatatatagatatatatgtaACAAAatatgttccaagacctccagtgtatacctgaaactgcagatagtaccaaactctatacgtactatgtttttttcctatacatacatacatacctatgatgaagtttaatttataaattaggcactgtaatagaataacaacaataactaataataaaagagaacaattagaatatacgttttgtttttgagatggagtcttgctctgttgcccaggctggagtgccatggcgccatctcggctcactgctacttccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggcctacaggcgcctgccaccacgcccggttaatttttgtatctttagtagagacagggtttcaccatattggccaggctggtctccaattcctgaccttgtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgttcccggctagaatatactttaatataagttacatgaatagttttctctctctcaaaatactgtaatatttggggattgcagctgcccacaggtaactgaaactgcagaaagCATACGGG-GACTACAGtatctgacaatggacttggatctagaatacataaagaactcttacaacttgataataaaaaggatataacccaattttaaaatggacaaaagatctgaacagatatttctccaaagaagatatacaaatggcctataagggccaggtgctgtggcttatgcctataatcccaacactttgggaggccaaggcaggtggatcacttgaggccaggagttcaagaccagtctggccaacatggcgaaaacccatctctactaaaaatataaaaatcagccaggcgttgtggcgcacgcctgtagtcccaggtactcaggcagatgaggcacaagaatcactcgaacccgggaggcagaggttgcaatgagctaagattgcaccactgcactccagcctgggcaacagagcaaaaccccacctaaaaataaataaataaataaaaataaaagaaagaaaataaatggccaataagcacaagaaaatacactcaatttctgtcttagtctgtttgtgctgctataacaaaatacctgagactgagtaatttataagcaaaaaaatttattcctcacagttccggaggctgggaaatccaaaatcaaggtgatagcacatttggcatttggtgagggcctgttccattgttcccgttcttgcagtggcatcttcacatggcaggagaagaaaggaaaaaagaagaagaaatgttatgtgaagactttttataagggcattaatttcattcacgagggcagaacactcatgacctaatcaccaccttgaaggcctcacttcttaacatcgtcacattaggtcttaggttataacatgaattttggaggacacaaacattcaaaccatagaaacatcattagccatcagggaagtgcaaatccaaaccatgttaagataccacttcacactcacaagaatggctataataaacagacagataataacaagtgttggagaaaatgtggaaaaactgaaacactcatatgttgctggagggaatgtaaaatgctttgcaatgaagttggaactgctttggaaatagtctggcaagttcctccaaagcttaaacatagagttatcatatgacctgggcaatgccaggcttcatcatattcccaagggaaatgaaaacatatgtccacacaaaaacttatacatgaatgttcatagcagcattattcataatagtcaaaaagtggagacagctgggtgtggtggctcccaacactttgggaggccaaggcgggaggatcacttgaggtcaggagttcgagaccagcctggccaacatagtgacatccgatctctactgaaaatacaaaaatcagcgggacatggtatatgtgcctgtaatcccagctacttgggaggctgaggcaggtgaatggcttgaatccaggaggcggaggctgcagtgagccaagatcacaccactgtactccagcctgagtgacagactgagactccatctcaaaaaaaaaaaaaa-----gtgataaacagataaatgaaatgtgttatattcctacaacggaatattattgagccataaaaaaaa-ggaaataagtactgacacatgctataacatgaatgataccttgaaaacatttaggttacttgaaaaaagccagtcacaaaagatcacaaattgtatggttccatttatatgaaatgtccaaataggcaaatcctatcctaaaagaaagtaaattagtggttgcctaggactgagggatggaggaaatggggagtgactgctcataggtatggtattttttttt-gggagaaatgaaaatattctaaaattgattgtggtggccaggcacaggggctcacgcctgtaatcccagcactttgagaggccgaggcgggcggatcacctgaggtcgggagttcgagactagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggtgcatacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccagggaggtggaggttgcagtgagctgagattgtgccactgcactccagtctggcgagagagtgagactccatctcattaaaaaaaaaaagaaa-----aaagaaa a score=45211.0 s hg17.chr17_random 584224 274 + 2618010 -AAAGAAAAAA--aagaatgtttcaggcaaagggaagag-aagtgcaatggtgctatttcaggcagaagcttgtcaggtttgctGTG----GTGTGG-TAGTGTGGAAGGACTCAGTGGGAAGGAAAAGAAATGAGGGCACAGTAGTGGGCAGGGCCAAGATAAA-----GCCATATGCATACTGCTACATTTTTTCCTTGTCCAATATATTTCATTAAATGTAGACAAAACTTATTATAAAGACATAACTTTTGATGTTTGTAAGGTCATCTGTTATTTGCACTCCt s panTro1.chr19 35006213 280 - 82489036 -aaagaaaaaa--aagaatgtttcaggcaaagggaagag-aagtgcaatggtgctatttcaggcagaagcttgtcaggtttgctgtg----gtgtggctaatgtggaaggactcagtgggaaggaaaagagatgagggcacagtagtgggcagggccaagataaaataaagccatgtgcacactgtTACATTTTTTCCTTGTCCAATATATTTCATTAAATGTAGACAAAACTTATTATAAAGACATAACTTTTGATGTTTGTAAGGTCATCTGTTATTTGCACTCCt s canFam1.chr9 26569446 279 - 53642819 AAAGGAAAGAAATaaaaatattccaagtagagggaagagaaagcgcaatggtgctgttccaggcagacatctggcatgtttggaaggatcagtgtgaccagcacagaatgatttaatgggagtaataagaaatga-agcagagtggtgggcagggccaaattata-aagaatcACATGCATGCTATTAAATTT-----TTGTCTGATATATTTCACTAAATACAGACAAAATATA-AACAGAAACACAACTTTTAGTATTTATAATATAATCTAGTA-TTGCATCCCT a score=28644.0 s hg17.chr17_random 584498 311 + 2618010 tttttttttt-------------gagatagggtctcactctgtcacccaggctggagtgcagtgttgccaccacagctcacagcagcctcgacctcctgggctcaagcactcctcccaccttagcctcctgagtatctgggactacaggcacatgccaccgtgccccactaattttttattttttgtaaagacagggtttctccatgttatccaggctggtctcaaactcttgagctcaaacaatctacccaccttggtctcccaaagagctaagattacaggcgtgagccactgtgcctggctTGTTATTTGCATTTGTGATT s panTro1.chr19 35006493 324 - 82489036 tttttttttttttttttttttttgagatagggtctcactctgtcacccaggctggagtgcagtgttgccaccacagctcacagcagcctcgacctcctgggctcaagcactcctcccaccttagcctcctgagtatctgggactacaggcacatgccaccgtgccccactaattttttattttttgtaaagacagggtttctccatgttacccaggctggtctcaaactcttgagctcaaacaatctacccaccttggtctcccaaagagctaagattacaggcgtgagccactgtgcctggctTGTTATTTGCATCTGTGATT a score=536.0 s hg17.chr17_random 584809 6 + 2618010 TTAAAA- s panTro1.chr19 35006817 6 - 82489036 TTAAAA- s canFam1.chr9 26569867 6 - 53642819 -taaaAA a score=6106.0 s hg17.chr17_random 584815 15 + 2618010 TTCCATGTTTTTTAT s panTro1.chr19 35006823 15 - 82489036 TTCCATGTTTTTTAT s mm5.chr11 86059781 15 + 121648857 CTCTAAGCTTTTTAT s canFam1.chr9 26569873 15 - 53642819 TTCCATGCTTTCTAT a score=80393.0 s hg17.chr17_random 584830 246 + 2618010 CATAAGATTGT-CAGGTGCTTTC-TGGACAGGAAATGCCTTAATTTATGACTC--AAAATACAAACAAGTGTAGGTGATCAAATGCATATCTATGTCTTC-AATGGAAATATATATACATACAAGTCATTAACGAAGACAAATGAGAACATGAAATTCATGACCTATTTTCCTTTCCATCACCTAGCCCCCTAAAGGAGAGATCTTTTTCATTCAGAGCCCTGGGTTTTGTTTT-GTTTCATGATTTGCTTt s panTro1.chr19 35006838 246 - 82489036 CATAAGATTGT-CAGGTGCTTTC-TGGACAGGAAATGCCTTAATTTGTGACTC--AAAATACAAACAAATGTAGGTGATCAAATGCATATCTATGTCTTC-AATGGAAATATATATACATATAAGTCATTAACGAAGACAAATGAGAACATGAAATTCATGATATATTTTCTTTTCCATCACCTAGCCCCCTAAAGGAGAGATCTTTTTCATTCAGAGCCCTGGGTTTTGTTTT-GTTTCATGATTTGCTTt s mm5.chr11 86059796 218 + 121648857 TTTAAGACTGTCCAGATACCTTC-AGGATAGAAAAAGACTTAGTTTCTGACTCATAAAATGTAAATTCAGTTACACAGTCAAATGAATTTCTGTGTTTTTAAACTGAAACATATACACATGTAAAT-ATT-------------------------TTCATAGTATTCTACTGTTTCTGTAGCCAGGCCCTCAAAGAAAGGCA----CTGCACCCAGTG--CTGATGTTTGTTCA-TTTTCTTAGTTTACTTT s rn3.chr10 74715177 241 + 110733352 TGTAAGACTGTCCAGATACTTTC-AGGATAGAAAAAGACTTAATTTCTGACTCATGAAATGTAAATTCGGTCACACAGCCAAAAGAGTTTCTGTGTTTA--AACTGAAACTTTTATATGTGTAAAC-ACCAGCAAGGATAAATGGGGACTGGAGGTTCATAATGTACTACTGCTTCTGTAACTGGGCCCCCAAAGAAAGGCA----CTGCATCCAGTG--CTGGCGTCTGTTCA-GTTTCCTAAGTTACTTT s canFam1.chr9 26569888 238 - 53642819 TATACCAGTGC-CAAGTACTTTCAAGGACAGGAAAAGGCTTAATTTATGATTCATAAAATACAAATAAA-TCAGGTGACCAAATGTATAACCATGCC-----------ATATATACATATCTATGTCATTAAC-AAGAAAAATCAGAAAATAAGATTCATGATACACTTTCTTCCTCAGCATCTAGCCCCTTAAAGGAGAGATCTTGTTCCTTGAGAGCCCTGGGTTTTGTTTTCATTTTTTACTTTGTTTT a score=18830.0 s hg17.chr17_random 585076 201 + 2618010 ttttttttttaaataagagtttatttatttatttatttgagacaaggtttcactcccatcagccaggctggagtgcaatggcgtgatctcagttcactgcaacttctgcctcctggactcaagtgactctcttgcctcagcctcctgagtagctgggactacaggcacgtgccgctgcatccagctaattttttgtagaga s panTro1.chr19 35007084 201 - 82489036 ttttttttttaaataagagtttatttatttatttatttgagacaaggtttcactcccatcagccaggctggagtgcaatggcgtgatctcagttcactgcaacttctgcctcctggactcaagtgattctcttgcctcagcctcctgagtagctgggactacaggcacgtgccactgcatccagctaattttttgtagaga a score=2501.0 s hg17.chr17_random 585277 26 + 2618010 cagggtttcaccatgttggccaggct s panTro1.chr19_random 5519804 26 + 57627672 cagggtttcaccatgttggccaggct a score=7323.0 s hg17.chr17_random 585303 79 + 2618010 ggtcttgaactcctgagttcaagcgatccgtctgcctctgagtctcaaagtgctagggttacaggaatgagccgccgcg s panTro1.chr19 35007301 79 - 82489036 agtcttgaactcctgagttcaagcgatccgtctgcctctgagtctcaaagtgctagggttacaggaatgagccaccgcg a score=4794.0 s hg17.chr17_random 585382 45 + 2618010 TGGCCAAAAGAGTTTATTTTTTAAAGAAAATTGACTTCTTTGAAA s panTro1.chr19 35007380 45 - 82489036 TGACCAAAAGAGTTTATTTTTTAAAGAAAATTGACTTCTTTGAAA s canFam1.chr9 26570126 45 - 53642819 GTTTTAAGTGATTTTAATATATAAGGAAAGAAATCATTTCCAAAA a score=29048.0 s hg17.chr17_random 585427 311 + 2618010 ACGTAGAAATGAggccgggcgcagtggctcacacctgtaattccagcactttgtgaggccgaggcaggtagatcgcttgaactgaagagtttgagaccaatctggccaacatggtgaaaccccatctctactaaaaatacaaacattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccaagattgcgccattgcactccagcctgggcaacaagagcaaaactccatctcaaaaagaaaagaaaaa s panTro1.chr19 35007425 311 - 82489036 ACGTAGAAATGAggccgggtgcagtggctcacacctgtaattccagcactttgtgaggccgaggcaggtagatcgcttgaactgaagagtttgagaccaatctggccaacatggtgaaaccccgtccctactaaaaatacaaacattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggcgaatcgcttgaacccgggaggcggaggttgcagtgagccaagattgcgccattgcactccagcctgggcaacaagaacaaaactccatctcaaaaagaaaagaaaaa a score=4462.0 s hg17.chr17_random 585738 21 + 2618010 GTAGAAATGAGGAAGCGGCCA s panTro1.chr19 35007736 21 - 82489036 GTAGAAATGAGGAAGCGGCCA s canFam1.chr9 26570171 21 - 53642819 GTAGAAATGTGGAACTGGCAA a score=16888.0 s hg17.chr17_random 585759 94 + 2618010 GCCTGTG-TGGGGATCTAATCAAACAAATCTTCCCCTGATGAGGGTAGCACTTAAGTTGAAAAAAATTTGCCTATATAATAAATATTGCAATACt s panTro1.chr19_random 5520286 94 + 57627672 GCCTGTG-TGGGGATCTAATCAAACAAATCTTCCCTTGATGAGGGTAGTGCTTAAGTTGAAAAAAATTTGCCtatataataaatattgcaatagt s canFam1.chr9 26570192 94 - 53642819 -GTTGTATTGGGTGCCTAATAAAGCAAATATTTCTATGACAATGGTAGTACTTAAGTTGAAGAAATTTTGCTTATAAAACAAATATTGCCATATA a score=1654.0 s hg17.chr17_random 585853 36 + 2618010 ttatttatttatttatttatttttcgagatgagggt s panTro1.chr19_random 5520380 30 + 57627672 ttattttattatt------ttttttGAGATGAGGGT a score=19588.0 s hg17.chr17_random 586040 260 + 2618010 gcccaggctggagtgcag--tggcgcgatctccgctcactgcaagctccgcctcccgcgttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccactgcgccca-ctaattttttgtatttttagtaga-gacggggtttcaccgtgttaaccaggatggtctcgctctgctgacctcgtgatccgcccgcctcgacctcccaaggtgctgggattacaggcgtgagccaccgcgcccggccC s panTro1.chr19_random 5520529 264 + 57627672 gcccaggctggagtgcagagtggcgcgatctcggctcactgcaagctgcgccccccgggttcacgccgttctcctgcctcagcctcccgagtagctgggacaacagatgcacgccaccacgcccggctaattttttgtatttttagtagaagacagggtttcactgtgttacccaggatggtctcgatctcctggcctcgtgatccgcctgcctcagcctcccaaagtgctgggattacaggcttcagccactgcgcccggccC a score=1172.0 s hg17.chr17_random 586300 18 + 2618010 ATACTGATTTTGAAATTT---- s panTro1.chr19_random 5520793 18 + 57627672 ATACTGATTTTTAAATTA---- s canFam1.chr9 26570287 22 - 53642819 AGACTGACTTTGGAGCAGGGAG a score=59267.0 s hg17.chr17_random 586318 187 + 2618010 AAAAAATCTACATTCTAT---ATTCGCATCATAGCTTCTCCCTAATAAAATCTTTGTGAGTGTTTATGGGACTTATTCCCCGAAAAATCTGCAAGCAGCCTGGTAGCTTTATATACACAGGAAAGCCAAAGGACAAACTAGGAATTACGTCAGAGATGGG-GAAAGAC---------------TAAGGATCTTACCCAAATCAGTT s panTro1.chr19_random 5520811 186 + 57627672 AAAAAA-CTACATTCTAT---ATTCCCATCATAGCTTCTCCCTAATAAAATCTTTATGAGTGTTTATGGGACTCCTTCCCTGGAAAATCTGCAAGCAGCCTGGTAGCTTTATATACATAGGAAAGCCAAAAGACAAACTAGGAATTACGTCAGAGATGGG-GAAAGAC---------------TAAGGATCTTACCCAAATCAGTT s mm5.chr11 86065044 163 + 121648857 AAGTAATGTGTGCTTTAT---AGTCTCATCAGGGCTT------------GTCTTTCTGGGTGTCTATGGGCATCT------------TCTATAAGCAACCAGGTAGCTTTATATTTGCCTGAGAATCAAGGAGTGAACTAGCCA-TATGCCAGAGATAAGTAAAAGGC---------------TACAGATCTCCAAGAAAGCAATT s rn3.chr10 74718845 172 + 110733352 AAGTGATGTGTCTTCTATAAAAGTCTCATCACGGCCT------------GTCTTTGCGAGCGTTTACAGGCTTCT------AGCAAATCCACAGGTAACGAGGTAGCTTCATATTTGCCTGAGAATCAAGGAATAGGTTAGCCA-TGTGCCAGAGGTAAGCAAAAGAC---------------TGCAGATCCCAGAGAAAGCAGTT s canFam1.chr9 26570309 199 - 53642819 GAAATATCTACATTCTAT---ATTCTCATAATA-CTCCTCTCTAATAAAATCTTTGTGGATGTTTATAAGCCTTC-TCTCTGAAAATTCTACAGGCAGCCTGCAAACTTTATATTTATATGAAAGCTAAAGGACAAGCTAAGAA-TATATCAGAGATGGT-GAAAAGCACAATTAACACTTTGTGAGGTGCCTGCCTGACTCAGTT a score=3158.0 s hg17.chr17_random 586505 9 + 2618010 GAGAATCAG s panTro1.chr19_random 5520997 9 + 57627672 GAAAATCAG s mm5.chr11 86065207 9 + 121648857 TGGGGTCAG s rn3.chr10 74719017 9 + 110733352 TGGGGTCAG s canFam1.chr9 26571617 9 - 53642819 GAGAGTGAA a score=2381.0 s hg17.chr17_random 586514 13 + 2618010 CCTTAAGTATAAA s panTro1.chr19_random 5521006 13 + 57627672 CTTTAAGTATAAA s mm5.chr11 86065216 13 + 121648857 AGTTGATCATAGA s canFam1.chr9 26571626 13 - 53642819 GCTGAATTATAAG a score=26230.0 s hg17.chr17_random 586527 306 + 2618010 TGggccaggtgttggtggctcacacctgtaatcctagcactttgggaggccaaggcgggcagatcacttgaggtcaggagttcgagaccaccctggccaacatggtgaaaccccgtctctactaaaagtaccaaaattagccaggcgtggtggcacgtgcctgtggtcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgagatcacgccactgcactccagcctgggtgacagagtaagactccgtctcaaaaaaaaaaaaaaaa----GTATA s panTro1.chr19_random 5521019 310 + 57627672 TGggccaggtattggtggctcacaccggtaatcctagcactttgggaggccaaggcgggcagatcccttgaggtcaggagttcgagaccactctggccaacatggagaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggcgtgtgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaaccccggaggcagaggttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaaaaaaaaaaaGTATA a score=273.0 s hg17.chr17_random 586833 1 + 2618010 A s panTro1.chr19_random 5521329 1 + 57627672 A s rn3.chr10 74719026 1 + 110733352 A a score=-1909.0 s hg17.chr17_random 586834 58 + 2618010 ATGAAGCACAATTAA-----------------------------------------------------------------------------CATTTGTTA--------------------------------------------ATTTTATAAAGCAAAAGTTCATAAAAATAAATAT s panTro1.chr19_random 5521330 58 + 57627672 ATGAAGTACAATTAA-----------------------------------------------------------------------------CATTTTATA--------------------------------------------ATTTTATAGAGCAAAAGTTCATAAAAATAAATAT s rn3.chr10 74719027 42 + 110733352 GTTGACCACATATCA-----------------------------------------------------------------------------CATC-----------------------------------------------------------GTAAACG-TCATAAAAGTAAGCAT s canFam1.chr9 26571931 179 - 53642819 gTGAAGCTGAATTAAATCAACATAATTACTCTTTGTAAATAGCAAAACAGAGTTTCTTTGTTTTCTAAATAAAATACATATGGTGCTGTACTTATTTTTTATTATTATTTTCATGTGGTGTTGTTTTTAAAAAAAAACAACTAACATTTTGTGGAGCAAATATTCATAAAAAGACATAT a score=2151.0 s hg17.chr17_random 586892 15 + 2618010 TCTAATTAA----CTCTCC s panTro1.chr19_random 5521388 19 + 57627672 TCTAATTAAGTCTTTCTCC s canFam1.chr9 26572110 15 - 53642819 TCTAACTAA----TTTTTC a score=1602.0 s hg17.chr17_random 586907 8 + 2618010 --TACATCTT s panTro1.chr19_random 5521407 8 + 57627672 --TACATCCT s rn3.chr10 74719141 8 + 110733352 --TGCCGCTC s canFam1.chr9 26572125 10 - 53642819 TACACATCTT a score=5571.0 s hg17.chr17_random 586915 11 + 2618010 ATAAACACTAT s panTro1.chr19_random 5521415 11 + 57627672 ATAAACACTAT s mm5.chr11 86065560 11 + 121648857 ATAAATGTTAT s rn3.chr10 74719149 11 + 110733352 ATAAATGTTAT s canFam1.chr9 26572135 11 - 53642819 ATAAATAAGTT a score=11818.0 s hg17.chr17_random 586926 42 + 2618010 TACCAAACCCATTTAAGATTGAAGATAAATTATATCATGGCA s panTro1.chr19_random 5521426 42 + 57627672 TGCCGAACCCATTTAAGATTGTAGATAAATTATATCATGCCA s mm5.chr11 86065571 41 + 121648857 TAATAAACTCATTCTCGATT-TAAATATATTATTCCAGGCCA s rn3.chr10 74719160 41 + 110733352 TAACAAACTCATTCGCGATT-TAAATATATTATTCCAGGCCA a score=37481.0 s hg17.chr17_random 586968 178 + 2618010 TGGGTAAAGATTTTCAATAAGGAGTTGCTAGGATAAAAGTCAAAATTCTCCAGCATAAATTCA-CTGAC-AGGGATTTCTGTTT--AATCTTTT---CAAAATTCTAATACCCAATTTGTTTCCTCTAGAGAATAACTCGTGTAGAATCATAACCTCTTTGGTGGACCTTGATTTTTCCATCTGT s panTro1.chr19_random 5521468 178 + 57627672 TGGGTAAAGATTTTCAATAAGGAGTTGCTGGGGTAAGAGTCAAAATTATCCAGCATAAATTCA-CTGAC-AGGGATTTCTGTTC--AATCTTTT---AAAAATTCTAATACCCAATTTATTTCCTCTAGAGAATAACTCATGTAGAATCATAACCTCTTTGGTGGACCTTGATTTTTCCATCTGT s mm5.chr11 86065612 168 + 121648857 ATGGTAAATGCTTCAAATAAAGATTTGCCAGAACACCAGTC-AAATTCTCCAGCATAACTTCATCAGTC-AGGGCT---TGCAC--ACTCTTGT----GGGATCCTAGAGCCCAGTTGACTCTCT---AAGGACAGAGAATGTTGACGCACAAAC-CTCTG--AAATCTTGTTGTCCATAGAAGT s rn3.chr10 74719201 151 + 110733352 ACAGTA----TTTCGAATACAGATTTGCCAGAACAC-AGTC-AAATTCTCCAGCAT--------TAAGC-AGGGAC---TGCACAGACTCTTGT----GGAGTCCGAGAGCCCAGCTGACTCTCT---AAGAACGGAGAATGTCGACTCACGAAC-CTTTG--AAACCTGGCTGTCCAT------ s canFam1.chr9 26572390 169 - 53642819 TGGGTAAAAATTT----TAAAGAGTTGCCATGATGAAAGTC--AAGTCTCCAGCATAAATTTA-CTGACAAGAGAGTGTTGTAC--AATCTTTCAAAAAAAATACTAATACTCTATATACTCTA----AAGAATAGGGCATATAAAGTCACAATATCTTTG---GGCTTTAATTCTTCCATCTGT a score=4111.0 s hg17.chr17_random 587146 10 + 2618010 --AAAAGTATAG s panTro1.chr19_random 5521646 10 + 57627672 --AAAAGTATAG s mm5.chr11 86066066 10 + 121648857 --AGAAGTGCAG s rn3.chr10 74719352 10 + 110733352 --AGAAGTTCAG s canFam1.chr9 26572559 12 - 53642819 AGATCTGTATAG a score=40954.0 s hg17.chr17_random 587156 186 + 2618010 AACTAGTTTTGA-----------CTTAA---CAGTCAACAAATGCCTAC-C-CTCTCCATATCTAGCTGATTAGAGCGCCCTCATGTGCGCATTTGCTGTAATGTTTTAGAAATCTGAAAAAGACAATATTAATCTCAGCAGTAATACAATAAATAATGTCTTCATTTGCACATTTATAGCAAATGCTA-TAAAT--------ATATAGCT s panTro1.chr19_random 5521986 166 + 57627672 AACTAGTTTTGAA----------TTTAA---CAGTCAACAAATGCCTAC-C-CTCTCCATATCTGTCTGATTAGAGCGCCCTCATGTGTGCATTTGTTGTAATGTTTTAGAAATCTGAAAAA----ATATTAATCTCAGCAGTAATACAATAAACAATGTCTTCATTTGCACATTTATG--------------------------ATAGCT s mm5.chr11 86066076 146 + 121648857 CACAGCTTTTGACT---------TCTCA---CAAACAGCCCTCGCCTCT-CACGTTCTGTTTCTGGCTGATTATGGCGCCCCCGTGTGTTCCTTTGTTGTAATGTTT--------------------TACTACTCCCAGAAGCAATGCAGTTAGTAATGGCTCTGTTTTCGTAGTTGTA-------------------------------- s rn3.chr10 74719362 171 + 110733352 -----CTTTTGACT---------TCTCA---CAAACAGCTCCGGGCTCT-CACATGTGGTTTCTGGCAGATTATGGCGCCCCCGTGTGTGCCTTTGTTGTAACATTT--------------------TACTA-TCTCAGGAGCAGTGCTGTCGGGAGT-TCTCTGTTTTCCGATTTGTAACTATTTCAAGTAAACACTAAAGAATGTGACT s canFam1.chr9 26572571 179 - 53642819 TATTGGTTTTGACTTACTAAAAATCTAAGTCCTAGCAAGAAGTGCTTATGCACTTCCAGTGTCTGACTGATTAGAGCGCCCTCATGTGTGTCTTTGTTGTAATGTTTTAAATACCTGAAAAG-----TGTTAATCTCAGCAGCAATACAATTA-TAATACTTCTATTTTCCCATTTATA--------------------------ATGGTT a score=21660.0 s hg17.chr17_random 587342 158 + 2618010 CCAAGTATTACTCAGTAAAAGCTAAAGGCAAATGCTGTAGTAGGTTAATCTTACTGTCGTTCACTATCAAACCTTTCATATGCC-AATTTTATCCTAAAACAGTGAAGTTATTGTTTTGGTTTCAATTTTAATTTAATGACTTAAAGGATTT---TTTCCCT s panTro1.chr19_random 5522152 155 + 57627672 TTAAGTATTACTCAGTAAATGCTAAAG-CAAATGCTGTAGTATGTTAATCTTACTGTCGTTGGCTATCAAACCTTTCATATGCC-AATTTTATTCTAAAACAGTCAAGTGATTGTTTCGGTTTAAATTTTAATTTAATGAC--AAAGGATTT---TTTCCCT s mm5.chr11 86066222 128 + 121648857 ---ACTATTTC-CAGTAAACACTAAAG------AATGTGATTAGTCTATAT-------ATTAACTATCAGACTTGCT----------TTTCATTTC----TGGGTATGTT-TTGTTTTGTCTGTGGTTTT--TTTGGGGGGTTATGGGTTTTTTATTTGCTT s canFam1.chr9 26572750 141 - 53642819 TCAAGTTTCACTCAGTAAATGTTAAAG------AGTGTGA----TTAATCCTACTACAATTCACTACCAACCTTTTCATATACCAAATTTTATTCTAAAGTAGTGAAG---TTATTCTGGTTTACAT-----TTCAATGACTTAAAGGATTT---TTTTCCT a score=4180.0 s hg17.chr17_random 587500 25 + 2618010 TAAAACTTCTA-----AGTATTTCATTATA s panTro1.chr19_random 5522307 25 + 57627672 TAAAACTTCCA-----AGTATTTCACTATA s mm5.chr11 86066350 28 + 121648857 TTAAACATGTA--TTTATTATTTTATTTTA s rn3.chr10 74720652 24 + 110733352 TAAACTTTGTA-----AGAACTT-AGGATA s canFam1.chr9 26572891 30 - 53642819 TGAAGCTTCCAAGATAAATTTTTCATTACA a score=9990.0 s hg17.chr17_random 587525 49 + 2618010 ATATTATTTCATCATTAGGCTTAAAGGAAAATATGTGGTCAATTGAGTT s panTro1.chr19_random 5522332 49 + 57627672 ATATTATTTCCTCATTAGGCTTAAAGGAAAATATGTGGTCAATTGAGTT s rn3.chr10 74720677 46 + 110733352 ACCTTTTATTCTAATCACCCTAGAAGAAAAA---GCAGTCAATAGACTC s canFam1.chr9 26572921 46 - 53642819 GTATTATTTTATCAT---GCCTGAAAAAAAAGATATAGCCAATGAAGTT a score=35390.0 s hg17.chr17_random 587574 102 + 2618010 ----GTTATTTATTATACATGATAGCTTGACATCATCTTTTT---AGGGATGGAAAACAGCTCCAGGGACCAAGTCTAACTCAGTTTTTTGATATAAGAATTTACCTGT s panTro1.chr19_random 5522381 102 + 57627672 ----GTTATTTATTATACATGATAGCTTGACGTCATCTTTTT---AGGGATGGAAAACAGCTCCAGGGACCAATTCTAACTCAGTTTTTTTATGTAAGAATTTATTTGT s mm5.chr11 86067580 104 + 121648857 ----ATTACTTACCATTCATAAGCACCAGAAGTAACCTTTCTTAGAAAGGTTGGTAACAGCTTT-GGGGCTAATTCTAATTCAGCTCTTTCAGATAAATATGGATTTAT s rn3.chr10 74720723 96 + 110733352 ----ATTACTTATAAT-----AGCACTGGAAGTAACCTCTTT---AGAGGTTGGTAACAGCTTA-GGGGCTAATTCCAATTCAACTTTATCAAATAAATATGTATTTAT s canFam1.chr9 26572967 88 - 53642819 GTCAGTTATATGTGAT------------------AGCGTTTT---AGGGGTGGAGAACAGTTCAAGGGGACATTTCTAACTCAGTTTTTCCAAATAAAAGTTTACTTGT a score=100.0 s hg17.chr17_random 587676 1 + 2618010 C s canFam1.chr9 26573055 1 - 53642819 C a score=76.0 s hg17.chr17_random 587676 2 + 2618010 Cg s panTro1.chr19_random 5522483 2 + 57627672 Ca s mm5.chr11 86067684 2 + 121648857 TG a score=21325.0 s hg17.chr17_random 587678 326 + 2618010 gccgggcgcaatggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatataggtcagcagatcaagaccaggagttcaagaccagcctggccaagatggtgaaaccccatctgtactaaaactacaaaaattagccaggcgtgatggcaggcacctgtaatcccacctacttgggaggctgaggcaggagaatcacttgaaccc-ggttcaagtgagccggc------tgcagtgagccaagatcacaccactgcactccagcctgggcaataagagcaagactccatctcaaaaaaaaaaaaaaaaaagaaTTTACTAGT s panTro1.chr19_random 5522485 297 + 57627672 gccaggcgcaatggctcacacctgtaatcccagcactttgagaggccgaggcgggtgga------tca------cgaggttaggagttcaagaccagcctggccaagatggtgaaaccccatctgtactaaaactataaaaattagccaggtgtgatggcaggcacctgtaatcccagctactcgggaggctgagg-aagagaatcacttgaaccctgg-----------cggcagaggttgcagtgagccaagatcacgccactgcactccaggctgggcaataagagtgaaactccatctcaaaaaaa------------aaTTTACTAGT a score=302.0 s hg17.chr17_random 588004 2 + 2618010 TT s panTro1.chr19_random 5522782 2 + 57627672 CT s rn3.chr10 74720819 2 + 110733352 TT a score=91.0 s hg17.chr17_random 588005 1 + 2618010 T s canFam1.chr9 26573056 1 - 53642819 T a score=10000.0 s hg17.chr17_random 588006 52 + 2618010 GAATCATAAC-----AATTTCT-----TCCTACTCAAAGAGACTACATTGGAGGAAGCCAAA s panTro1.chr19_random 5522784 53 + 57627672 AAATCATAACAATGTAATTTCT-----TCCTACTCAGAG----TACATTGGAGGAAGCCAAA s mm5.chr11 86067686 61 + 121648857 AAATCATTTTAAAGACACTTCTAGGACACTTCCTCACAAAGACCACAGTAGATATAAAT-AA s rn3.chr10 74720821 57 + 110733352 AAATCACTTTAAAGACACTTCTAGGACACCTCCTCACAAAGGCCACAGTAGATAT-----AA s canFam1.chr9 26573057 43 - 53642819 AAATCA--------------CT-----TCCTATTCAAAAAGACTATATTGGAGGGAGCCAAA a score=2268.0 s hg17.chr17_random 588058 7 + 2618010 ACAGAAG s panTro1.chr19_random 5522837 7 + 57627672 AGAGAAG s mm5.chr11 86067747 7 + 121648857 ACAGGAC s rn3.chr10 74720878 7 + 110733352 ACAGAAG a score=123.0 s hg17.chr17_random 588065 2 + 2618010 Ct s panTro1.chr19_random 5522844 2 + 57627672 Gt s mm5.chr11 86067754 2 + 121648857 CT a score=18409.0 s hg17.chr17_random 588067 227 + 2618010 tattta---------tttatttatatactttatttatttatttttgagacagagtcttgctctgtcacccaggctggagtacagtggtgtgatcttggctcactgcaacatctgcctcccgggttcaagcgattctcctgcctcagcctccctagtagctgggattacaggtgtgtgccaccacggccagctaatttttgtatttttagtagagacgggttttcaccatgttggcc s panTro1.chr19_random 5522846 235 + 57627672 tatttatttatatactttatttattta-tttatttatttatttttgagatggagtcttgctctgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacatccgcctcccgggttcaagcgattctcctgcttcagcctccctagtagctggaattacaggtgtgtgccgccaccactagctaatttttgtatttttagtagagatgggttttcaccatgttagcc a score=8727.0 s hg17.chr17_random 588294 92 + 2618010 aggctggtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccaagcccagctT s panTro1.chr19 35010308 92 - 82489036 aggctggtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccaagcccagcCT a score=10872.0 s hg17.chr17_random 588386 64 + 2618010 AGAGAAGCTTATTTTTTAAAAGAAAATACACAAAAAAATCAAAATCTCATAAGTCCAATTGTAA s panTro1.chr19 35010400 64 - 82489036 AGAGAAGCTTATTTTTTAAAAGAAAATACACAAAAAAATCAAAATCTCTTAAGTCCAATTGTAA s canFam1.chr9 26573100 63 - 53642819 AGAGAATCTCACTTTTAAAAAAATTGTACAT-GAAATTTAAAAATCTCATAAATCCAACCATAA a score=0.0 s hg17.chr17_random 588450 62 + 2618010 TTTTTTTTTGGCTTTTAAAAATTGTTAATGCCCTCAAATATTCTCCTATCCAATCACTGTAT a score=5308.0 s hg17.chr17_random 588450 59 + 2618010 TTTTTTTTTGGCTTTTAAAAATTGTTAATGCCCTCAAATATTCTCCTATCCAATCACTG s panTro1.chr19 35010464 59 - 82489036 TTTTTTTTTGGCTTTTAAAAAATGTTAATGCCCTCAAATATTCTCCTATCCAATCACTG a score=575.0 s hg17.chr17_random 588509 3 + 2618010 TAT s panTro1.chr19 35010523 3 - 82489036 TAT s mm5.chr11 86068091 3 + 121648857 TAC a score=5764.0 s hg17.chr17_random 588512 20 + 2618010 TTTAAATGGcattcctccag s panTro1.chr19 35010526 20 - 82489036 TTTAAATGGcattcctccaa s mm5.chr11 86068094 20 + 121648857 ACAGAGAGGAATTCACCCAA s canFam1.chr9 26573163 20 - 53642819 TTTAAATGGTattcatccaa a score=50618.0 s hg17.chr17_random 588532 149 + 2618010 caaatatttgtt-gagcccccactatgtgccaggATTGAAATGTCAAATTGAAGGAGGCAATAGCTACTGAAGTAAAGCAAAAAAAAGT---------ACTGG--TTATTtttccttctataaaatgacctagtaataaccgctttacccaggagagttgc s panTro1.chr19 35010546 149 - 82489036 caaatatttgtt-gagcccccactacgtgccaggATTGAAATGTCAAATTGAAGGAGGCAATAGCTACTGAAGTAAAGCAAAAAAAAGT---------ACTGG--CTATTtttccttctataaaatgacctagtaataaccgctttacccaggagagttgc s mm5.chr11 86068114 144 + 121648857 CAG----TGACT-GAAGCCCCACT--GTCTCAAAATCAAAATGCCAAATTG-GGAGGGCTCAAGTTACTAAAGAAAAAAAAAGGAAACCAACCAACCAACTGATTTTCTTTTTCCTTCTGTAAA-----CCAGTAATGACTGC----CTCGTGAGAGAGGC s rn3.chr10 74721182 146 + 110733352 CACGTCCCCACC-CCCTTCCCACCCCGTCTCAAGATCAAAATGCCAAATTG-GGTGGGCTCAAGTTGCTAAGGAAAAAAAAAGCAAACCAACCGACCCATT----TTCTTTTTCCTTCTATAAA-----CCGGTAATGACTGC----CTCATGAGAATGGT s canFam1.chr9 26573183 149 - 53642819 caaatatttatcagggaccccactatgtgccaggAATGAGATGTTAAACTGAAGGAATCAAAACCTACTAAAGTCAAGCAAAA-AAAGT---------ACTGGG-TTTTTTTTCCTTCTATAAA-TGACTTCATAATAACTGCTTCACTCAAGAGAGTTGC a score=4062.0 s hg17.chr17_random 588681 11 + 2618010 tgtaaagatct s panTro1.chr19 35010695 11 - 82489036 tgtaaagatct s mm5.chr11 86068258 11 + 121648857 TGTAGAAGGCC s canFam1.chr9 26573332 11 - 53642819 TGTAAAGATCT a score=2147.0 s hg17.chr17_random 588681 23 + 2618010 tgtaaagatctaataacatgaca s canFam1.chr9 26573332 23 - 53642819 TGTAAAGATCTAATAACATGACA a score=3357.0 s hg17.chr17_random 588692 12 + 2618010 aataacatgaca s panTro1.chr19 35010706 12 - 82489036 aataacatgaca s canFam1.chr9 26573343 12 - 53642819 AATAACATGACA a score=4705.0 s hg17.chr17_random 588704 21 + 2618010 catataaCCACA-CCCCTAAAG s panTro1.chr19 35010718 21 - 82489036 catataaCCACA-CCCCTAAAG s rn3.chr10 74721328 22 + 110733352 CATAAAAGCACAGGCTCTGAGG s canFam1.chr9 26573355 21 - 53642819 TAAACAACCACA-TTTTTAAAA a score=1852.0 s hg17.chr17_random 588725 12 + 2618010 AATGAGGTGTTa s panTro1.chr19 35010739 12 - 82489036 AATGAGGTGTTa s rn3.chr10 74721350 12 + 110733352 AATGCCTTGTCA a score=21706.0 s hg17.chr17_random 588737 264 + 2618010 ccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacactctggggactgttgcggggtgtggggaggggggagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctacaacttaaagtgtaataataataaaataataaaataaaaaaaag s panTro1.chr19 35010751 257 - 82489036 ccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacaccggggcctgctgtggggtcaggggaggggggagggatagcattaggagatatacctaatg-taaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaacttaaagtgtaataataataaaataaaaaAATAAA------ a score=594.0 s hg17.chr17_random 589001 36 + 2618010 aaattttgcttaaataaatattataataaaaaaaaC s panTro1.chr19 35011008 31 - 82489036 ---TTTTGCttaaataaatattataataaaaaaa-- s mm5.chr11 86068269 10 + 121648857 AGGCTTTGC------------------------A-- a score=3940.0 s hg17.chr17_random 589037 18 + 2618010 GAATGAGGTGTTATTAAA s panTro1.chr19 35011039 18 - 82489036 GAATGAGGTGTTATTAAA s mm5.chr11 86068279 16 + 121648857 CAGTGCCTTGTCATT--A s canFam1.chr9 26573376 18 - 53642819 GAAAGAAGTGTTATTAAA a score=49206.0 s hg17.chr17_random 589055 94 + 2618010 ATGTTTGCAAGAGAAACCCTAGTAATTCCAAGCACATATTTTAGGAATGGTTTCTTGTGTAGAAAATCCTGGAATGTGAGGCTCTGCTGATTTT s panTro1.chr19 35011057 94 - 82489036 ATGTTTGCAAGAGAAACCCTAGTAATTCCAAGCACATATTTTAGGAATGGTTTCTTGTGTAGAAAATCCTGGAATGTGAGGCTCTGCTGATTTT s mm5.chr11 86068295 94 + 121648857 CTGTTTACGAGGGAAGCCTTGCCGGCTCCCAGCATCTATTTTATGGATAGCTTTGTATGGAGAAAATCCCCGAATCTGGGGTTTTGCTATTTTT s rn3.chr10 74721365 94 + 110733352 ATGTTTACGAGGGAAGCCTTGTCAACTCCCAGCATATATTTTATGGATAGCTTTGTATGTAGAAAATCTCTAAATCTGAGGTTTTATTAATTTT s canFam1.chr9 26573394 92 - 53642819 CAGTTTACAAGAGAAACCTTGGTGATTCCAATGACATA--TTAGGCACTGTTTGGTGTGTGGAAAATACTTGAATGTGAGGCTCTATGGATTTT a score=1638.0 s hg17.chr17_random 589149 3 + 2618010 TTT s panTro1.chr19 35011151 3 - 82489036 TTT s mm5.chr11 86068389 3 + 121648857 TTT s rn3.chr10 74721459 3 + 110733352 TTT a score=29225.0 s hg17.chr17_random 589152 324 + 2618010 AATGCATATTCTCTTCTTATGTATGCGGAAtttttttttttttt-----gagatagagccttgctctgttgcccaggctggaatgcactggcacgatcttggctcactgcaactgccacctcctggtttcaagtgattctcctgcctcagcctcccgagtagatggaattacaggcgtgtgccaccgcacttggctaatatttgtatttttagtagagatggggtttcaccatattggccaggctgttctagaactcctgaccttgtgatccacccacttcagcctcccaaagtgctgggattacaggtatgagccactgcacctggcc s panTro1.chr19 35011154 329 - 82489036 AATGCATATTCTCTTCTTATGTATGTGGAAtttttttttttttttttttgagatagagccttgctctgttgcccaggctggaatgcactggcatgatcttggctcactgcaactgctacctcctggtttcaagtgattctcctgcctcagcctcccgagtagatggaattacaggcatgtgccaccacacttggctaatatttgtatttttagtagagatggggtttcaccatattggccaggctgttctagaattcctgaccttgtgatccacccacttcagcctcccaaagtgctgggattacaggcatgagccactgcaccaggcc a score=48845.0 s hg17.chr17_random 589476 283 + 2618010 --TATTTTTGTTTTTACTAATGTTTCAAGAGACCCACTTTATGTACAGAATTCTGGCTACAACCTAACAAATGAGTTGCTC---TGTTCATCAGTTATAGCCAATTTAAGTAATTATGAAAAGCTCAACAATACTTTTAACTGGCAATGAAAGCGTCAATAGCTCACATTTACCACCACAACTTAGGATTTCTTGGTAGCTAAATAAAATGCTTCTA-----TTTTGTGGGGG-GAAACTGTCACATAAGTTGAAATTCTGCAATGTTCAATTGATGAAAAGGTCTCTATGTTA s panTro1.chr19 35011483 282 - 82489036 --TATTTTTGTTTTTACTAATGTTTAAAGAGACCCACTTTATGTACAGAATTCTGGCTACAACCTAACAAATGAGTTGCTC---TGTTCATCAGTTATAGCCAATTTAAGTAATTATGAAAAGCTCAACAATACTTT-AACTGGCAATGAAAGCATCAGTATCTCACATTTACCACCACAACTTAGGATTTCTTGGTAGCTAAATAAAATGCTTCTA-----TTTTGTGGGGG-GAAACTGTCACATAAGTTGAAATTCTGCAATGTTCAATTGAGGAAAAGGTCTCTATGTTA s canFam1.chr9 26626449 276 - 53642819 GTTACTAT--TTTTTATTAATTTTT--AGGGATCCACTTTACATGAAGAATTCTGTCTATAACCTAACAAATGAATTATTCTTGTGTTTATTATT--TGGCCAGTTTAAGTAATTATGAAAAG-----------TTT-AACTGGCAGTGAAGGCTTAGTTATATAACTTTTGCCACCATGACTCTAGATTTCCTTAGAGCAAGGTAAGATATATCTAGACTTTTTTATGGGGGCAAAATTGTCAAACTAGTTGAAACTTTGCAATGCCCAACTGAGGAAAAGACCTCTATGTTA a score=19600.0 s hg17.chr17_random 589759 121 + 2618010 AATCAAAGGTATAAATTCCACATCAGTAGTACATGA-------------AAGAGAAAAAAAAA--------GCCAAAATTAAAGTGATTCATGCCCACTTCCCTGAGTGAACCT--AAGATTTTACTAACAGAGATGCCGTAAC s panTro1.chr19 35011765 121 - 82489036 AATCAAAGGTATAAATTCCACATCAGTAGTACATGA-------------AAGAGAAAAAAAAA--------GCCAAAATTAAAGTGATTCATGCCCACTTCCCTAACTGAACCT--AAGATTTTACTAACAGAGATGCCGTAAC s canFam1.chr9 26626922 144 - 53642819 AATCAAAGCTATAAACTCCACATCAGTAGAAAACAAAATTCTGTATCACAAGAGAAAATAAAGAAAGCTATGCAAGAATTAAAATGAATCATGAATACTTCACTAACAGAACATGAGAGATTTTGCTAAGGAGTATACAATGAT a score=23863.0 s hg17.chr17_random 589880 172 + 2618010 TTTGA-TCATGCACACATCAAACTTGAATTTAAAAACATGCATGCACTCACTCATCTTTTATCTCTTATGTAATT----AATACTGTAAGATTATATTTTGCCTACGTGCTCT----ATATTACTA-----------ATTTATAGGATTATTACTATTCAGTGTTGTTTACTTGAAACCATACTGTACTATA s panTro1.chr19 49797551 165 + 82489036 TTTGA-TCATGCACACATCAAACTTGAATTTAAAAACATGCATGCACTCACTCATCTTTTATCTCTTATG----T----AATACTGTAAGATTATATTTTGCCTATGTGCTCT----ATAT---TA-----------ATTTATAGGATTATTACTATTCAGTGTTGTTTACTCAAAACCATACTGTACTATA s canFam1.chr9 26627066 168 - 53642819 TTTGCTTCATGTAGACAT-AAACTTAA-----------------CATTCATTCATATTTCATCCCTTATGTAAATTGAAAATATTGTAAAATTATATTTTGCATATGTACTCTACTCATATCACTATATAATCATACATTTATAAAATTAT---TATTCAA---AATTTCCTCAAAACTATACTGTACTATG a score=23654.0 s hg17.chr17_random 590052 287 + 2618010 CACAACTTTTGCATTCCATGCTAACtttatttttttaatta-------ttttttttttatacagagtctcactcactctattgcccaggctggagtgcagtggcacgatcttggctcctgcaacctctgcctctcgggttcaagtcattctcctacctcagcctcccaagtagttggtaccacaggtacatgccaccacacccggctaatttttgtatttttggtagagatggggtttcaccatgtgggccaggctggtctcgaactcctgacctcaagGTTATAGGCCTGAGC s panTro1.chr19 49797716 294 + 82489036 CACAACTTTTGCATCCCATACTAACTTAATTTTTTTAATTAAtttttttttttttttgatacggagtctcactcactctatcgctcaggctggagtgcagtggcacaatcttggctcctgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagttggtaccacaggtgcatgccaccacacccggctaatttttgtacttttagtagagatggggtttcaccatgttagccaggctggtcttgaactcctgacctcaagGTTATAGCCATAAGC a score=42089.0 s hg17.chr17_random 590339 288 + 2618010 CACCATGTCCCAGCTCCATGCTAACTTTAGAGCTTATTTCCCATCCCATAAGA-TACAACACTACT-TGTGTTATATAGTGAGCAGTGTGGGGAAGAAAAGCAT-AGAATTAAGTTAGTGACAAATCCAGTGAACTCAAAAAGA----GGGAAAAAAAC---ACTCCCAAACAATTGTTTTCCCCATATTCTATTCTCCCTAGAGGTATTCCATACAGGAACGACAAAAGAAAAAAAAGGATACAAAATGAGAAAGAT---GTTCATGTGACATA-TAAGTACAGTAATAAAATCAACAAGC s panTro1.chr19 49798010 288 + 82489036 GACCATGCCCCAACTCCATGCTAACTTTAGAGCTTATTTCCCATCCCATAAGA-TACAACACTACT-TGTATTACATAGTGAGCAATGTGGGGAAGAAAAGCTTAAGAATTAAGTTAGTGACAAATCCAGTGAACTCAAAAACA----GGG-AAAAAAC---ACTCCCAAACAATTATTTTCCCCATATTCTATTCTCCCTAGA-GTAGTCCAAAAACAAATGACAAAAGAAAAAAAAGGATACAAAATGAGATAGAT---GTTCATGTGACATATTAAGTACAGTAATAAAATCAACAAGC s canFam1.chr9 26627254 276 - 53642819 CACAATTTCTCCATTCCATGCTAACTTTAGAACTTACCCTCTGCCCCAAAAGACTACAACACTATTATGTATTATAATGTGAATAGTAT----AAAAAAAATTG-AGAA-----TTAGTGACAAATCTAGTGAACTCAGAAATAAGAGGGGAAAAAAACCCAACTTCCAAATTATTATTTTCTCCATATTCCATTCTCCCTAGAGGTAGTCTAAAAAGAAATGACAAAGGATAATGCCAAGTAACAAAGGAAAAAAATGAGGTTTTTGT----------------TATCAAAGTCTACAATC a score=6145.0 s hg17.chr17_random 590627 87 + 2618010 ATATATGGTATTTAAGCAAAATAGTATGTATGCATTGATGGTCATCTGATATAAATCCATCATTTCTGTTGGCCAACATCTAAAACC s panTro1.chr19 49798298 83 + 82489036 ATATGTGCTATTTGAGCAAAATA----GTATGCATTCATGGTCTTCTGATATAAATCCATCATTTCTGTTGGCCAACATCAAAAACC a score=1421.0 s hg17.chr17_random 590714 6 + 2618010 TTTACT s panTro1.chr19 49798381 6 + 82489036 TTTACT s canFam1.chr9 26627764 6 - 53642819 TTTGCT a score=35970.0 s hg17.chr17_random 590720 99 + 2618010 ----TTTCTGAGGAGAC---AAGCTATAAATC---TATACGGATATTTCTACAACAAGA--------ATTCACTATT-------ACATATGAACCAATATAATTTGATGTCAAATATTCACAAT s panTro1.chr19 49798387 99 + 82489036 ----TTTCTGAGGACAC---AAGCTATAAATC---TATACAGACATTTCTACAATGAGA--------ATTCACTATT-------ACATATGAACCAATATGTTTTGATGTCaaatatttaaaat s mm5.chr11 86107384 103 + 121648857 ----TTTCTAAAGAGACTTTGGACTAGAGATACAGCACACAGACACCTCTTCAATGAAA------TTATTTATTATC-------AAAGATGAATCAATAT-TTCTGCTATCAAATATT---AAT s rn3.chr10 76675173 113 + 110733352 ----TTTCTAAAGAGACTTTGGACTAGAGATACAGCACACAGACACTTATTCAATGAAAACTAATGCATTTATTATT------CAAAGATGAATCACTAT-TTCTGTTATCAAATATTAACATT s canFam1.chr9 26627770 114 - 53642819 TTTCTATTTGAGGAGAC---AAGGTACAAATC---AATACAGATACTTCCACAATGAAA----ATAAATTTACTACTGTTTCCTATGAACCAGTCAATATATTTTGATGTCAAATATTCACAAT a score=-848.0 s hg17.chr17_random 590819 12 + 2618010 ---TAG-GTTTAAAAA s panTro1.chr19 49798486 13 + 82489036 ---taatgttaaaaaa s mm5.chr11 86107487 12 + 121648857 ---TAACATTACAAA- s canFam1.chr9 26627884 13 - 53642819 CAACAG-GTTAAAA-- a score=2592.0 s hg17.chr17_random 590831 9 + 2618010 ATCCCCTAC s panTro1.chr19 49798499 9 + 82489036 atCCCCTAC s canFam1.chr9 26627897 9 - 53642819 ATCCCCTAC a score=6023.0 s hg17.chr17_random 590840 72 + 2618010 TTggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcgggtggatcatgaggtc s panTro1.chr19 49798508 72 + 82489036 TTGgcctggcacggtggctcatgcctgtattcccaacactttgggaggccaaggcgggtggatcacgaggtc a score=45012.0 s hg17.chr17_random 590912 544 + 2618010 aagaaatcaagaccatcctggccaacatggtgaagccctgtctctactaaaaatacaaaaattaactgggcgtggtggcaggcac--ctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatcgcgccactgcaccccagcctgatgacagagtgagactcagtctcaaaaaaaaaaaaaaaaaTCCCCTACTTATGTTAAGAGTACCAAAAATAGggccaggaatgatggc--tcatgcctataattttggcactttgggaagccgaggtgggaagatagcttgagtccaggagtaaaatagtgggactctgtctctacaaaaaaataaaaaattagctggatggggcacacacctgtagtccaggtactcacgaggctgaaatgggtggatcacttgagcctgggaggtcaaggctgtagtgaactgtgatcacaccactacaccctacacccagcctgggctacaaggtgagaccctgtctcaaaaaaaaaaaaaaaaaaa s panTro1.chr19 49798904 542 + 82489036 aagaaatcgagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattaactgggcgtggtggc--gcacgcctatagtcccagctactcgggaggctgaggcaggagaatcactcgaacccaggaggcagaagttgcagtgagctgagatcgcgccactgcactccaacctggtgacagagcaagactccatctcaaaaaaaaaaaaaaa--TCCCCTACTTATGTTAAGAGTACCAAAAATAGggccaggaacgatggcgttgatgcctataattctggcactttgggaagccaaggcaggaagatagcttgagtccaggagtaaaatagtgagactctgtctctacaaaaaaataaaaaattagctgcatgtggcacacacctgtggtccaggtactcacaaggctgaaatgggtggatcacttgagcctgggaggtcaaggctgcagtgaactgtgatcacaccactacac--tacacccagcctaggttacaaggtgagaccctgtctcaaaaaaaaaaaaaaaaaaa a score=11056.0 s hg17.chr17_random 591456 85 + 2618010 G-----GTACCAAAAATCTATAGCTGTTTCAGAAATAAAATACATGTAGTTAGTGAGGTTTTTCTCTCCCACTGCTATGACT---TAATTTTT s panTro1.chr19 49799446 89 + 82489036 aaaaaaGTACCAAAAATCTATAGCTGTTTCAGGAATAAAATACATGTAGTCAGTGAGGTTTTTCTCCCCGACTGCTATGACT----AATTTTT s canFam1.chr9 26627920 81 - 53642819 -----TGTACCAAAAATCTGTAGCTATTTCAGGAATAGAATAGTTATAGTGAG-------CTCTTCTCCTATGGTTATAATAGTGTGACTTCC a score=2723.0 s hg17.chr17_random 591541 5 + 2618010 GGTTG s panTro1.chr19 49799535 5 + 82489036 GGTTG s mm5.chr11 86108201 5 + 121648857 GTTTG s rn3.chr10 76676111 5 + 110733352 GTTTG s canFam1.chr9 26628001 5 - 53642819 AATTG a score=32660.0 s hg17.chr17_random 591546 160 + 2618010 AGATGCTAAGCCAAACATCATTTTAAGT-CTGTGGCCCAACCAAAAAAGGGAATCA-TACTCTCCAAAGAATTGTACATTCCCACTCTAATTGCTAAAATAAAATGTT-GGATTATGAAAATCAATTTTGTAGGT-----ATCAATA---AGTTAT-AAGAGCATGGCTTAT s panTro1.chr19 49799540 160 + 82489036 AGATGCTAAGCCAAACATCATTTTAAGT-CTGTGGCCTAAAAAAAAAAGGGAATCA-TACTTTCCAAAGATTTGTACATTCCCACTCTAATTGCTAAAATAAAATGTT-GGATTATGAAAATAAATTTTGTAGGT-----ATCAATA---AGTTAT-AAAGGCATGGCttat s mm5.chr11 86108206 154 + 121648857 TGATGCTGACCCACACATCATCTAAGTTACTATCACTCAACCAAACA--TGAATCA-----CTCCAAAGATTCAAACATTCTCACTGTAATTTCTAAAACAGAATGTTAAGATTATGAAAATCAA-TTTGTAGAT-----ACCAGTA---AGTTATCAAAGAAATGGCTT-- s rn3.chr10 76676116 136 + 110733352 TTATGCTGAGCCACAC-------TAAGT-C-----------------ACTAAGTCACTACCACTCAGCTAAACATGAATCC---CTGCAATTTCTAAAACAGAATGTTAAGATTATGAAAATAAA-TGTGTAGGT-----ACCAGTAAGTAGTTATCAAGGAAATGGCTT-- s canFam1.chr9 26628006 163 - 53642819 AGATACTGAGTCAAACATCATTTTAAGT-CAATGGCCTATCTAAAAAA-GGAATCA-TATACTCCAAAGAATTATATAGTCCTACTCTAACTGCTGAAAT-GGATACT-GGATCATGAGAATCAATTTTCTAACTTAGCAATTAGAA---AACTTA-AAAAACGTTAAATAT s danRer1.chr19 9709677 147 + 24317769 AGATACCATGTTACACATTTTTCCAAAT-AAATCCTTAAATGCAAGAAAG-------TATTCTGCAAAAAAA-AAACCTCCAAATGTTACCCAATATAAAAAAATGTT------ACCCAACTAAC-TTTCAAAAT-----GCTAAAA---TGTGGC-AACTCAATTCTTAAA a score=6982.0 s hg17.chr17_random 591706 37 + 2618010 TTA---AA--AAAAAAA--------GTGGGCCAGGTTAC----------CTACATGA---GCT s panTro1.chr19 49799700 45 + 82489036 tta---aa--aaaaaaaaaaaaaaaGTGGGCCAGGTTAC----------CTACATGA---ACT s mm5.chr11 86108360 34 + 121648857 ------AA--AAGCAAA--------GTCATTCAAGCTTC----------CCACATAA---ACT s rn3.chr10 76676252 34 + 110733352 ------AA--AAGCAAA--------GTCATTCAGGCTAC----------CCACATAA---ACT s canFam1.chr9 26628171 39 - 53642819 CTA---AATTAAAAATA--------GTATCTCAAGTTAT----------CTGTATCA---ACC s fr1.chrUn 152682679 43 + 349519338 TTAAATAA--ACACGTA--------GTCTCACAATTCAC----------CCAACTGACACACT s danRer1.chr19 9709824 44 + 24317769 ------AG--AGAGAGA--------AAAGTCCAAATTGCAAGTCCCTTTTTATCTGT---ATT a score=2618.0 s hg17.chr17_random 591743 21 + 2618010 GCAAAGCAAGC-AAACTGAATT s canFam1.chr9 26628210 21 - 53642819 GCAAAGCAAGT-AAACTGAATT s fr1.chrUn 152682722 22 + 349519338 ATAAATGAAGTGGAACTGAACT s danRer1.chr19 9709868 19 + 24317769 CTATGGCAA---AAACAGGCTT a score=6110.0 s hg17.chr17_random 591743 20 + 2618010 GCAAAGCAAGC-AAACTGAAT s panTro1.chr19 49799745 20 + 82489036 GCAAAGCAAGC-AAACTGAAT s canFam1.chr9 26628210 20 - 53642819 GCAAAGCAAGT-AAACTGAAT s fr1.chrUn 152682722 21 + 349519338 ATAAATGAAGTGGAACTGAAC s danRer1.chr19 9709868 18 + 24317769 CTATGGCAA---AAACAGGCT a score=2618.0 s hg17.chr17_random 591743 21 + 2618010 GCAAAGCAAGC-AAACTGAATT s canFam1.chr9 26628210 21 - 53642819 GCAAAGCAAGT-AAACTGAATT s fr1.chrUn 152682722 22 + 349519338 ATAAATGAAGTGGAACTGAACT s danRer1.chr19 9709868 19 + 24317769 CTATGGCAA---AAACAGGCTT a score=1092.0 s hg17.chr17_random 591763 2 + 2618010 TT s panTro1.chr19 35013627 2 - 82489036 TT s canFam1.chr9 26628230 2 - 53642819 TT s danRer1.chr19 9709886 2 + 24317769 TT a score=91.0 s hg17.chr17_random 591764 1 + 2618010 T s canFam1.chr9 26628231 1 - 53642819 T a score=91.0 s hg17.chr17_random 591764 1 + 2618010 T s canFam1.chr9 26628231 1 - 53642819 T a score=60.0 s hg17.chr17_random 591764 2 + 2618010 TT s danRer1.chr19 9709887 2 + 24317769 TC a score=910.0 s hg17.chr17_random 591765 1 + 2618010 T s panTro1.chr19 35013629 1 - 82489036 T s mm5.chr11 86108394 1 + 121648857 T s rn3.chr10 76676286 1 + 110733352 T s canFam1.chr9 26628232 1 - 53642819 T a score=0.0 s hg17.chr17_random 591766 3 + 2618010 CTT a score=1385.0 s hg17.chr17_random 591766 3 + 2618010 CTT s panTro1.chr19 35013630 3 - 82489036 CTT s mm5.chr11 86108395 3 + 121648857 CTC s rn3.chr10 76676287 3 + 110733352 CTC s canFam1.chr9 26628233 3 - 53642819 CTT s fr1.chrUn 152682744 3 + 349519338 CAA a score=-9649.0 s hg17.chr17_random 591769 42 + 2618010 ATCG--AAGAGCCCATCC---------TCATAC-------------TTAAAATTTCC---CATG--ACTAC s panTro1.chr19 35013633 45 - 82489036 ATCG--AAGAGCCCATCC---------TCATAC-------------TTAAAATTTTCTTCCATG--ACTAC s mm5.chr11 86108398 31 + 121648857 ACTG------------CA---------TCA-AC-------------CTGAGGTTTCC---TACA--GCTGC s rn3.chr10 76676290 31 + 110733352 ACTG------------CA---------TCATAC--------------TGAAGTTTCC---TATG--GCTGC s canFam1.chr9 26628236 52 - 53642819 ATTGAAAAGGGTCCATCATACTTGAATTCATAC-------------TTGA-TTTTCT---CATG--GCTAC s fr1.chrUn 152682747 57 + 349519338 ACCC--AAAACTGCAACC---------TTACACACTTAGCGTGAAGATGGAACCTCT---AATGATACAAC s danRer1.chr19 9709889 31 + 24317769 ----------------------ATAGAGGACAC-------------TGAAATCATGA---CTTG--GCTGC a score=0.0 s hg17.chr17_random 591811 15 + 2618010 ATGGAAATTCTTTCA a score=6977.0 s hg17.chr17_random 591811 12 + 2618010 ATGG------AAATTCTT s panTro1.chr19 35013678 11 - 82489036 -TGG------AAATTCTT s mm5.chr11 86108429 18 + 121648857 ATGGAGACCTAAGTTCTT s rn3.chr10 76676321 18 + 110733352 ATGGAGACTTAAATTCTC s canFam1.chr9 26628288 12 - 53642819 ATGG------AAATTCTT s fr1.chrUn 152682804 12 + 349519338 AGGG------ACATCGTT a score=4230.0 s hg17.chr17_random 591823 3 + 2618010 TCA s panTro1.chr19 35013689 3 - 82489036 TCA s mm5.chr11 86108447 3 + 121648857 TCA s rn3.chr10 76676339 3 + 110733352 TCA s canFam1.chr9 26628300 3 - 53642819 TCA s galGal2.chr19 2505013 3 - 9463882 TCA a score=0.0 s hg17.chr17_random 591823 3 + 2618010 TCA a score=5922.0 s hg17.chr17_random 591826 3 + 2618010 CTT s panTro1.chr19 35013692 3 - 82489036 CTT s mm5.chr11 86108450 3 + 121648857 CTT s rn3.chr10 76676342 3 + 110733352 CTT s canFam1.chr9 26628303 3 - 53642819 CTT s galGal2.chr19 2505016 3 - 9463882 CTT s danRer1.chr19 9709920 3 + 24317769 CTT a score=282.0 s hg17.chr17_random 591826 3 + 2618010 CTT s danRer1.chr19 9709920 3 + 24317769 CTT a score=229922.0 s hg17.chr17_random 591829 120 + 2618010 ACCAAAAACACCTGATTGGCACTTTCACTGAGAGTTGTGTCATCTGGGCTGTCGACAGGTGTCTGACGTGTAAACTTGGAATCAAACTGACTTACATCCTCTTCAGATTGCTCT--ATACAA s panTro1.chr19 35013695 120 - 82489036 ACCAGAAAGACCTGATTCCCAGTTTCACTGAGAGTTGCGTCATCTGGGCTGTCGACAGGTGTCTGACGTGTAAACTTGGAATCAAACTGACTTACATCCTCTTCAGATTGCTTT--ATACAA s mm5.chr11 86108453 120 + 121648857 ACCAGAAAGACCTGGTTGGCACTTTCACTGAGAGTGGAGTCATCAGGGCTGTCAACAGGTGTCTGACGTGTAAACTTTGAATCAAACTGACTCACATCCTCTTCAGATTGCTTC--ATAAGA s rn3.chr10 76676345 120 + 110733352 ACCAGAAAGACCTGGTTGGCACTTTCACTGAGAGTTGAGTCATCGGGGCTGTCAACAGGTGTCTGACGAGTAAACTTTGAATCAAACTGACTCACATCCTCTTCAGATTGCTTC--ATAAGA s canFam1.chr9 26628306 120 - 53642819 ACCAAAAAGACCTGGTTGGCACTTTCACTGAGAGTTGAGTCATCTGGGCTGTCAACAGGTGTCTGACGTGTAAACTTTGAATCAAACTGACTCACATCCTCTTCAGATTGCTTT--GTGAAA s galGal2.chr19 2505019 120 - 9463882 ACCAGAAAGACCTGGTTGGCACTTTCACTGAGAGTAGAGTCATCTGGGCTATCAACAGGTGTCTGACGTGTAAACTTTGAATCAAACTGGCTCACATCCTCTTCAGATTGCTTT--GCAAAA s fr1.chrUn 152682816 118 + 349519338 ACCAGGAAGACTTGGTTGGCACTTTCGCTAAGCATGGAGTCGTCAGGGCTATCCACTGGAGTCTGGCTCGTGAACTTGGAGTCAAACTGACTGGCGTCATCGGCCGATTGCT----GCCAAA s danRer1.chr19 9709923 122 + 24317769 ACCAAAAAGACCTGATTTGCACTTTCGCTCAGTGTGGAGTCATCAGGACTGTCAACGGGAGTCTGGCTGGTGAACTTTGAATCAAACTGGCTCACATCCTCAGCAGATTGCTGCCAATACAA a score=36022.0 s hg17.chr17_random 591949 142 + 2618010 ACAAAATAATTTAGAAAATAATGAATAGTCCATATGA----CATCAATCAAATGCACT-------------GTAAGCTCTGG---GAGCT-C-----------TTTTCGCAGGGGTTAACTATAATAAAGTATTAGAATAGTCTTA---G----CAGGCACTATTCTAATAGTGGAGAAAT s panTro1.chr19 35013815 142 - 82489036 ACAAAATAATTTAGAAAATAATGAATAGTCCATATGA----CATCAATCAAATGCACT-------------GTAAGCTCTGG---GAGCT-C-----------TTTTCGCAGGGGTTAACTATAATAAAGTATTAGAATAGTCTTA---G----CAGGCACTATTCTAATAGTGGAGAAAT s mm5.chr11 86108573 129 + 121648857 ACAA---TGGTTAGAAAATGGTGAACAGTCTATATTATTCCTATCAATCAAAGGTGCC-------------ACAAGCCCTAT-----ATT-C-----------TTTGCACAGGGTTTAACTGTAATAAAACATGAGAATAATTTTA---G----CAGCCAC------------AGACAAAA s rn3.chr10 76676465 124 + 110733352 ACAA---TGGTTAGAAAATGGTGAACAGTCTATATTATTCCTATCAATCAAAGATGCC-------------ACAAGCCCTAG-----ATT-C-----------TTTGCACAGGATTTGACTGTAATAAAAC-----AATAATTTTA---G----CAGCCAT------------AGACAATG s canFam1.chr9 26628426 143 - 53642819 AACA---AAATTAGAAAATGATGAATAGTCTATATTATACATATCAACCAAATGCCATTACTTGCATTAGAGAAGGCTCTAGC--TAGAA-C-----------TCTTCACAGGGTTTGACTATAATAAAATCTCAGAATAGTCTTA---G----CAGGCAC------------AGACTA-- s galGal2.chr19 2505139 163 - 9463882 ACAA------------AATGATTAAGGGTTTATATTACAGATATCAACCAAATGGCTTAGCGGTGATCAGTGTAGCCTCTGGATGGAGTT-CATTCCATAGGATTTTGGCAGAGCTCTGCTGTAGTAAAGCCCTGGAGTGGTGTCG---GAATCCTGTCGC--TGCCAGTGGGAGGTCACT s fr1.chrUn 152682934 124 + 349519338 ACAA-GTGGGTTAGTGAAT----------------------CACCTGGCAAG-------------------TAAGGTCCCAGAGGAAGCTGC-----------TGTGTACAAGAAATACATTTAAAGAATTACCAGGAAAGGCTTAAATG----GAGGCTCGACTTTGTGAGCAAGGAGGT a score=5505.0 s hg17.chr17_random 592091 54 + 2618010 GCAAGTG-------GAAGAAAAAAATGCAAGTGGAAAGTAC--------TGAGTCAA-----ATTACATCTTCA s panTro1.chr19 35013957 54 - 82489036 GCAAGTG-------GAAGAAAAAAATGCAAGTGGAAAGTAC--------TGAGTCAA-----ATTACATCTTCC s mm5.chr11 86108702 44 + 121648857 G---------------AAAAAAAAATGCAGGTAGAAAG-----------AGAGTCAAC----AGTACATTTACA s rn3.chr10 76676589 39 + 110733352 A---------------AAAAAAAAATGCAGGTAGAGTG---------------TCGT-----GGTACATTTACA s canFam1.chr9 26628569 47 - 53642819 ----------------AAGAATAAATATAGGTGGGAAGTTT------CAAAGGTCAA-----ATTACATCTTCA s galGal2.chr19 2505302 68 - 9463882 ATGGGCACTGACACTGAGAAATAAAGGCAAGGGGGAGGGGCAAAAATCATGGATCAAAAAGGAACACA------ a score=91.0 s hg17.chr17_random 592145 1 + 2618010 A s galGal2.chr19 2505370 1 - 9463882 A a score=91.0 s hg17.chr17_random 592145 1 + 2618010 A s rn3.chr10 76676649 1 + 110733352 A a score=273.0 s hg17.chr17_random 592145 1 + 2618010 A s panTro1.chr19 35014011 1 - 82489036 A s mm5.chr11 86109029 1 + 121648857 A a score=91.0 s hg17.chr17_random 592145 1 + 2618010 A s canFam1.chr9 26628616 1 - 53642819 A a score=13415.0 s hg17.chr17_random 592146 48 + 2618010 ATCTTAAACATGCACT--AAAAAAGATTTTAGTATACTGTTATTCCTATT- s panTro1.chr19 35014012 48 - 82489036 ATCTTAAACATGCACT--AAAAAAGATTTTAGTATACTGTTATTCCTACT- s mm5.chr11 86109030 48 + 121648857 ATTTTATATATGAATT--AACATAAATTTCAGTAGATAGTTACCATTCTT- s rn3.chr10 76676914 48 + 110733352 ATTTTATATATGAATT--AACATAGATTTTAGTAGATAATTATTATCCTT- s canFam1.chr9 26628617 44 - 53642819 ATTTTAAACAT--ATT--AAAGTAGATTTTTATTAGTACACACCATTT--- s galGal2.chr19 2505371 51 - 9463882 ATTAAAAAGATGCCTTTAAAAAAAAATCTCAAATTACAAACAAAAACTTTT a score=91.0 s hg17.chr17_random 592194 1 + 2618010 A s rn3.chr10 76676962 1 + 110733352 A a score=2364.0 s hg17.chr17_random 592194 5 + 2618010 AAAAA s panTro1.chr19 35014060 5 - 82489036 AAAAA s canFam1.chr9 26628661 5 - 53642819 AAAAA s galGal2.chr19 2505422 5 - 9463882 AGAAA a score=310.0 s hg17.chr17_random 592199 13 + 2618010 TGTGAATATATTg------ s panTro1.chr19 35014065 13 - 82489036 TGTGAATATATTg------ s galGal2.chr19 2505427 13 - 9463882 ------TACAATGGCAGTT a score=24341.0 s hg17.chr17_random 592212 305 + 2618010 gctgggcatggtggctcaggcctgtaatcccagcactttgggaggctgaggcaggcagatcatgaggtcaggagttcaagaccagcctggccaataaagcgaaaccccgtctctactaaaaatacaaaacatcagccgggcgtggtggcgggcgcctgtaatcctagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgccgcaagcagagatcgtgccactgcacaccagcccaggtgacggtgcgagagtctgtctcaatgaaaaaaaaaaaaaaaaaaga-------a s panTro1.chr19 35014078 295 - 82489036 actgggcatggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcatgaggtcaggagttcaagaccagcctggccaataaagcgaaaccccgtctctactaaaaatacaaaacattagccgggtgtgatggcgggcacctgtaatcctagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcaagcagagattgtgccactgcacaccagcccaggtgacagtgcgagagtctgtctcaa-----------------aaaTATATATATA a score=578.0 s hg17.chr17_random 592517 9 + 2618010 TATATCG-AG s panTro1.chr19 35014373 10 - 82489036 TATATCGTAG s galGal2.chr19 2505440 9 - 9463882 TCTTTCA-AG a score=-31.0 s hg17.chr17_random 592526 1 + 2618010 C s galGal2.chr19 2505449 1 - 9463882 T a score=300.0 s hg17.chr17_random 592526 1 + 2618010 C s panTro1.chr19 35014383 1 - 82489036 C s mm5.chr11 86109078 1 + 121648857 C a score=-1945.0 s hg17.chr17_random 592527 14 + 2618010 ----------TCAAAACAAGC-TGG s panTro1.chr19 35014384 14 - 82489036 ----------TCAAAACAAGC-TGG s mm5.chr11 86109079 7 + 121648857 ----------TTAAAAC-------- s rn3.chr10 76676963 7 + 110733352 ----------TCTAAAC-------- s galGal2.chr19 2505450 25 - 9463882 TTAACTCTGGTCACAACCAGTATAG a score=4749.0 s hg17.chr17_random 592541 22 + 2618010 AAAAAATGTGAATATCAAT-TTC s panTro1.chr19 35014398 22 - 82489036 AAAAAATGTGAATATCAAT-TTC s mm5.chr11 86109086 14 + 121648857 --------TGAGTATCAGT-TTT s rn3.chr10 76676970 10 + 110733352 --------TGAGTATCAT----- s canFam1.chr9 26628666 23 - 53642819 AAAAATTTTGAATGTCAGTCTTT s galGal2.chr19 2505475 22 - 9463882 AACAGCTGCAACTATTAAT-TTC a score=22228.0 s hg17.chr17_random 592563 60 + 2618010 CCCTCTCACAAAGCTTCAGTGTGCCTAGTCCACTGGCTAAATCCCTGTTTAGAGATAATT s panTro1.chr19 35014420 60 - 82489036 CCCTCTCACAAAGCTTCAGTGTGCCTAGGCCACTGGCTAAATCCCTGTTTAGAGATAATT s mm5.chr11 86109100 53 + 121648857 CC--TTCATAACCCTTTAGTGCATCTAGT-CACTCAATAAATTCC----TAGAGATAATA s rn3.chr10 76676980 44 + 110733352 -----------AACCTTAGTATATCCAGT-CACTCACTAAGTTCC----TAGAGATAAGT s canFam1.chr9 26628689 60 - 53642819 CCCACTTAAAAAGCTTCAGTGTGCCTAGTCCACTGGCTAAATTTTCTAGTAGAGATAATT a score=24446.0 s hg17.chr17_random 592623 165 + 2618010 A---ATTCAGTTGGCTACTGCAGGTTTGTAATAAACCT------GAAAAACTACTGAAGCAGAGTTAAAACATGAATAATACTGGTAAGATGCTCCAGT---------------TAAAGTTTCTT-------------------------------------------------------CCCACAGCTCATTT-------------------------CATTCCTTCAGAAATCTAAAGGAGCAAAAATAATTTTCTATTCCGCATGG s panTro1.chr19 35014480 165 - 82489036 A---GTTCAGTTGGCTACTGCAGGTTTGTAATAAACCT------GAAAAACTACTGAAGCAGAGTTAAAACATGAATAACACTGGTAAGATGCTCCAGT---------------TAAAGTTTCTT-------------------------------------------------------CCCACAGCTCATTT-------------------------CATTCCTTCAGAAATCTAAAGGAGCAAAAATAATTTTCTATTCTGCATGG s mm5.chr11 86109153 259 + 121648857 ATGTGCTCAA-CGGCTGTTGTATATCTACAGTAAGTCTAGATAAGGATAACTATGGAAGAAGAGTTCAA--ATGAGACACAGAGATAAGATGCCGGAGTTAGCCACCTAGGATGTAAACTTTGTTTACTCTCAGTGTCAAGCACTTGCCTGGGCATGTGCAATCACCTGGTATTAACACACCAACATCAAATTCTCCCTGGCCTGAGAGTCTTCTTGTGCATTACTTCAT--GTCTAAGAGTTTTAAAGTAGTGGTTTGCTCTG----- s canFam1.chr9 26628749 158 - 53642819 ---TGCTTAGTTGACTACTGCAGGTGTATGATAAACCT------GAAAAACTATTGAAGCAGAGTTTCAACACAAAACACATTTATAAAATGCTC-------------------TGAAGTTTCTT-------------------------------------------------------CTATTATTTCATCT----------------------------GACTACAGATTTCTCAAGGAGCAAAAATGGTATTCTACTCTGTATGA a score=24298.0 s hg17.chr17_random 592788 84 + 2618010 GTTATAAGTTATATTTCCTTGTGAAAGTATAGTTATCACTTCAGTTCTAACCATGAGATTTATTTATTTAATTCCTTCTCTCTT s panTro1.chr19 35014645 84 - 82489036 GTTATAAGTTATATTTCCTTGTGAAAGTATAGTTATCACTTCAGTTCTAACCATGAGATTTATTTATTTAATTCCTTCTCTCTT s mm5.chr11 86109412 70 + 121648857 -------AGTACATTTTCTTGTTATAGAATAG-TATCATCTAAGTTCTACCCACCAGATTCCTTTAATT------TCTTCCCTT s rn3.chr10 76677240 71 + 110733352 GTTCTG-AGTACATTTTCTTACTAAGGAATAG-TATCATCTAAGCTCTACCTACCAGATTCCTTTAATT-----------TCTT s canFam1.chr9 26628907 70 - 53642819 --------GTCTATTTGCTTATGAAAAA-----CATCACCTAAATT-TAACCACTACATCTGTTTCTTTAATTCCTTCTCCCTG a score=14324.0 s hg17.chr17_random 592872 54 + 2618010 TCCCAAAATATCTGGTTAAACTCTTGGGCCAAATGTAAGAAGTAAATAATAATT s panTro1.chr19 35014729 54 - 82489036 TCCCAAAATATCTGGTTAAACTCTTGGGCCAAATGTAAGAAGTAAATAATAATT s mm5.chr11 86109482 53 + 121648857 TCATGATGTGTCTAGTCTGACTCGTGAACCAAATAGAGGAAAGAGATATCAA-T s rn3.chr10 76677311 53 + 110733352 TCGT-ATGTATCTAGTCTGACTCATGAACCAAACAGAGGAAATAAATATCAATT a score=0.0 s hg17.chr17_random 592926 22 + 2618010 TAGAATATCTGACTTAATACTA a score=3114.0 s hg17.chr17_random 592926 16 + 2618010 TAGAATATCTGACTTA s panTro1.chr19 35014783 16 - 82489036 TAGAATATCTGACTTA s mm5.chr11 86109535 16 + 121648857 TAAAAAATATGACCTA a score=555.0 s hg17.chr17_random 592942 6 + 2618010 ATACTA s panTro1.chr19 35014799 6 - 82489036 ATACTA a score=2694.0 s hg17.chr17_random 592948 12 + 2618010 AAAGATGATGAC s panTro1.chr19 35014805 12 - 82489036 AAAGATGATGAC s rn3.chr10 76677364 12 + 110733352 AAAAATTATGAC a score=12212.0 s hg17.chr17_random 592960 130 + 2618010 CACATTGACCTTATAATTCTCTTAGAGCCCAGACTGTgaacctgcactccctggaggaatggctgattccaagtgtggggaaaatgtacaagataagcatagaacaccagtttccttattttgctctctc s panTro1.chr19 35014817 130 - 82489036 CACATTGACCTTATAATTCTCTTAGAGCCCAGACTGTgaacctgcactccctggaggaatggctgattccaagtgtggggaaaatgtacaagataagcatagaacaccagtttccttattttgctctttc a score=18159.0 s hg17.chr17_random 593090 109 + 2618010 gtacaacaccagacaatgtgctcatgtcaaaaggactcagaacccaacatgaagatgcacccaGCATTCACTGCACCCAGCATTCAACGAAGGGAAAAAACGAGCACCA s panTro1.chr19 35014947 109 - 82489036 gtacaacactagacaatgtgctcatgtcaaaaggactcagaacccaacatgaagatgcacccaGCATTCACTGCACCCAGCATTCAACGAAGGGAAAAAATGAGCACCA s canFam1.chr9 26628977 93 - 53642819 ATACAACATCAGACTTTGTggtcatgtcaaaagagccagggaaccaacatgaaga----------------agcacccagtatccaaagatgataaaaacaaagcatca a score=29252.0 s hg17.chr17_random 593199 324 + 2618010 ATAAAAATAACTgctaggtgcggtggctcacgcctatcatcccaacactttgggaggcagaggcaggtggattacttttgagctcaggatttgaagaccagcctggtgaacacggcaaaaccccgtctctaccagaaacacaaaaattagctgggcatgatggtgtacctgtggtcccagctactcaagagggtgaggtgggaggattgctggaggtcgggacgtcaagcctgcagtgggcagcgattataccactgcactacagcttgggtgacagagttaagaccctgcctgaaaacaataaatgaataaataaaaataaaa s panTro1.chr19 35015056 323 - 82489036 ATAAAAATAACTgctaggtgcggtggctcatgcctatcatcccaacactttgggaggcagaggcaggtggattgcttttgagctcaggatttgaagaccagcctggtgaacacggcaaaaccccatctctaccagaaacacaaaaattagctgggcatggtggtgtacctgtggtcccagctactcaagagggtgaggtgggaggattgctggaagtcaggacgtcaagcctgtagtgggcagcgattataccactgcactacagcttgggtgacagag-taagaccctgcctcaaaacaataaatgaataaataaaaataaaa a score=11785.0 s hg17.chr17_random 593523 80 + 2618010 Taaaaataactgcgatgaaaggaaacacaaatatgttaaaacgtgtaagttcataa-tatactaaaaaagaaaaaa----acaca s panTro1.chr19 35015379 84 - 82489036 Taaaaataactgcaatgaaatgaaacacaaatgtgttaaaacgtgtaagttcataa-tatactaaaaaagaaaaaaacacacaca s canFam1.chr9 26629071 74 - 53642819 caaaaattactgcaatggattaaaacacaaatatattcaaaagcataagttcataattatacttttaaaaaaat----------- a score=7758.0 s hg17.chr17_random 593603 22 + 2618010 cacaaagttcattggtcaattt s panTro1.chr19 35015463 22 - 82489036 cacaaagttcattggtcaattc s mm5.chr11 86109961 22 + 121648857 CTTATAATTCATTATTTAATTT s canFam1.chr9 26629145 22 - 53642819 tacagaattcattggtcaattt a score=62435.0 s hg17.chr17_random 593625 148 + 2618010 tggaagatgctagggaactaattcattattttgaaaacta------ggaaagaatcaaacatacatcctgccttttctgtatgaactgtaccttgggtaactaactgatcaaagagtttctctttatgaaagaattccagctaacaaagaaaga s panTro1.chr19 35015485 148 - 82489036 tggaagatgctagggaactaattcattattttgaaaacta------ggaaagaatcaaacatacatcctgcctttcctgtatgaactgtaccttgggtaactaactgatcaaagagtttctctttatgaaagaattccagctaacaaagaaaga s mm5.chr11 86109983 146 + 121648857 TAGAAGATACTAAGGAACTATTTCATTATTTTGAAGAATAT-----TAAAAAAATCATACATTTAGCCTACATTCCTGGTATCAACTATACTTTGGATAACCAAACAACTGATG---TCTGCTTTATGGAAAACTTGTGGCTAATGAAGAATGA s rn3.chr10 76677582 150 + 110733352 TGGGGGAAAAAAGGGAACTATTTCATTATTTTAAAGAATATTAAAAAAAAAGAATCAAACATTTAGCCTACATTCCCGGTATCAACTACACCGTGGGTAACCGAACAACTAATG----TCGCTTTATGGAAAACTTCTGGTTAATAAAGCGTGA s canFam1.chr9 26629167 120 - 53642819 tggaagatgttaaaaaactaatttattattttgaaaactg------ggaaggaaacaaacatttatcctgcctttcctgtatgaac--------------------aatctaag--tttctttttagggaaaaattc--actaacgaaga---- a score=2311.0 s hg17.chr17_random 593773 25 + 2618010 agaaataacag--ttagaataaaacca s panTro1.chr19 35015633 25 - 82489036 agaaataacag--ttagaataaaacca s mm5.chr11 86110129 23 + 121648857 ACAAGGTAAGG----AGAACACAACTA s canFam1.chr9 26629287 25 - 53642819 attaataatagtattagaataagaa-- a score=1212.0 s hg17.chr17_random 593773 35 + 2618010 agaaataacag--ttagaataaaaccatttcacaaac s canFam1.chr9 26629287 35 - 53642819 attaataatagtattagaataaga--attttgcaaac a score=2305.0 s hg17.chr17_random 593798 10 + 2618010 tttcacaaac s panTro1.chr19 35015658 10 - 82489036 tttcacaaac s canFam1.chr9 26629312 10 - 53642819 ttttgcaaac a score=14209.0 s hg17.chr17_random 593808 57 + 2618010 acctgatgaaACTACAAAAGTAGGCcagagtttctcaacctcagggctactgacatt s panTro1.chr19 35015668 57 - 82489036 acctgatgaaACTATAAAAGTGGGCTACAgtttctcaacctcagggctactgacatt s rn3.chr10 76677732 51 + 110733352 ACATGATGAGAACACAGAA-----CTAGAGTTTCTC-ACCTCAGCACTGCTGACATT s canFam1.chr9 26629322 55 - 53642819 ccctaaC--AATCTTCAAGCTAGGCcagggtttctcattctcagcgctactgatatt a score=91.0 s hg17.chr17_random 593865 1 + 2618010 t s canFam1.chr9 26629377 1 - 53642819 t a score=91.0 s hg17.chr17_random 593865 1 + 2618010 t s panTro1.chr19 35015725 1 - 82489036 t a score=13651.0 s hg17.chr17_random 593866 54 + 2618010 taggcctattaatactttgcgttagggggctgtgctgtgctgtg-------------------------ctgactctta s panTro1.chr19 35015726 49 - 82489036 taggcctattaatactttgcgttagggg-----gctgtgctatg-------------------------ctgactctta s mm5.chr11 86110407 53 + 121648857 TGGGCTTGATAATTCTTCAAAGTAGAGAGCTG-CCTGCCATGTA-------------------------CTGGCACTTA s rn3.chr10 76678013 49 + 110733352 TGGGCTTGATAATTCTTCAGGGTAGAGA-----ACTGCCATGTG-------------------------CTGGCCCTCA s canFam1.chr9 26629378 73 - 53642819 cgggcttggtaactctt-gttgtagggg-----cctatcctgtgtaacagaggatgtatatcagcatctctggcctcta a score=22777.0 s hg17.chr17_random 593920 151 + 2618010 -cccctgaaggtacctatagcat-tccctctcccaagctgtgacaatcagtgtgtctccagacattgccaaatt-accctggTAGTGAAATGCTGAC--ACAGG-------CAGTGACCACTAACATCACTAAAAAAACACACATACGCACACACAAGTACAC s panTro1.chr19 35015775 151 - 82489036 -cccctgaaggtacctatagcat-tccctcccccaacctgtgacaatcagtgtgtctccagacattgccaaatt-accctggTAGTGAAATGCTGAC--ACAGG-------CAGTGACCACTAACATAACTAAAAAAACACACATACACACACACAACTACAC s mm5.chr11 86110460 140 + 121648857 --CGCTGTAGGTACTAGGAGCAGAGCCCTCCTGCAAC-----ACAACCAAAATACTTCTAGACTTTGGT-------CCCTGGTTAAGAACCATTGACATACAGGGATTCATTAATGACTACTAACTGCTCTAAAGGAATACAACTATAC---------TGTAA s canFam1.chr9 26629451 143 - 53642819 cccactgcaa--accagtagcat-ctcctcct-caagtggtgataact----tgtctccaaaccttaccaaatTGACCTTAGCTAAGAATCACCAat--gtaggcaatgatcaatgaccactaacatcactaaaaaaaaatacaaatacatac---------- a score=32472.0 s hg17.chr17_random 594071 128 + 2618010 ATTATGCCTCCTGATCAAAGCATATGCGATACTGAGAGT-GTaatctgaatcagatcaaccacctaaatttaactaccagtttttgg----------aaatttggggaacagatga----acatggtcaat-gacactctgggg s panTro1.chr19 35015926 129 - 82489036 ATTATGCCTCCTGATCAAAGCATACGCGATACTGAGAGTGGTaatctgaatcagatcaaccacctaaatttaaataccagtttttgg----------aaatttggggaacagatga----acatggtcaat-gaaactctgggg s mm5.chr11 86110600 99 + 121648857 GATAAGCTTCCTTGTCAAAGCATAT--AGCATCAAGAAG-TCCATCTGTATC---CCAAGTTCCTTAATTT---------------------------------GGAAAGAGAT-A----ACATAATAAAT-GATGCAGTGGGG s rn3.chr10 76678309 101 + 110733352 GATAAGCTTCCTTGTCAGAGTATAC--AGCACCAGGAGT-TCCATCTGTATC---CCGAGTTCCATAATTT---------------------------------GGAAACAGATTA----ACATAATAAGTGGACACAATGGGG s canFam1.chr9 26629594 140 - 53642819 attatgcctcctgaccaaaatatat--aacatcaaaagt-tttatctcaatcagattaattctctaaatctaaatactactatctaaatcaaaatctaaatacagggaactaattacaccatatggtcaat-gacactatgggg a score=14167.0 s hg17.chr17_random 594199 27 + 2618010 ataatatcagc-aaaatcaaaatttgag- s panTro1.chr19 35016055 27 - 82489036 ataatatcagc-aaaatcagaatttgag- s mm5.chr11 86110699 28 + 121648857 ATAAAATGAGCAAAAATTAAAATGTAAG- s rn3.chr10 76678410 27 + 110733352 ATAAAATGAGC-AAAATTAAAACGTAAG- s canFam1.chr9 26629940 28 - 53642819 ATAAaatcagc-aaaatcaagatgttagg a score=-23.0 s hg17.chr17_random 594226 4 + 2618010 aatt s panTro1.chr19 35016082 4 - 82489036 aatt s mm5.chr11 86110930 4 + 121648857 AAAT s rn3.chr10 76678438 3 + 110733352 AAT- s canFam1.chr9 26629968 4 - 53642819 aacc a score=17985.0 s hg17.chr17_random 594230 142 + 2618010 ctacagga----------------caaatgacccc-gttt-------cttcagtaaa----tCACGA----------------GGGGAATCTATAAAGGAAAAGAGACC-----------------------------TAAGAGACATAGTAACCAAACTACATACAGACCTTGATTAAATCCTTACaaa----------caggagaaaaaaaaaaaaagaatgg s panTro1.chr19 35016086 141 - 82489036 ctacagga----------------caaatgaccct-gttt-------cttcaataaa----tcacga----------------ggggaatctataaatgaaaagagacc-----------------------------taAGAGACATAGTAACCAAACTACATACAGACCTTGATTAAATCCTTACAAA----------CAGGAG-AAAAAAAAAAAAGAATGG s mm5.chr11 86110934 198 + 121648857 CTACTGCATAGCATATATATGCAGCAAAATACTCC-ATACACATAAAATTCAAGAAA----TTAAAAACACTTATTCTAATCTGAGGAAT-TCTACAGAACAGAGGACCAGAAGGTATGAGGGGATACCTGTGTATAGTAAGAAAGAGAGCACCGAAACTATGTATAGACTATGAC----TCCTTATTGA-----------------AAATAATGAGTAAAAGGG s canFam1.chr9 26629972 168 - 53642819 ctacagga----------------cagaaccctctagttt-------cttcagttaagtactcaggagaagaattgagag---ggggtatctacagatggaaagagaca-----------------------------taaaaaatacaataaacaaactgtatac--accttgactgaatccttactgaaacaaaCCAACAGGGGGAAAAAGCAAACAAAGTGG a score=1537.0 s hg17.chr17_random 594372 14 + 2618010 aacaacaacaaaaa s panTro1.chr19 35016227 14 - 82489036 AACAACAACAACAA s mm5.chr11 86111132 14 + 121648857 GAAATCAAAATAAA a score=18612.0 s hg17.chr17_random 594386 209 + 2618010 aaaaaTTAGGTGgggcaacacagggagacctcatctctagaaaaattcaaaaaattggatgtggtgatgcacccctgtggtcccagctatatgggaggatcccttgagcctgggaagatgaggctgccatgagccactatcatgccgctgcactccagcctgggcaacagagaaagaccctatctcaaaaaaaaaagagaaaaaaaaaa----------- s panTro1.chr19 35016241 220 - 82489036 AAAAATTAGGTGgggcaacacagggagacctcatctctagaaaaattcaaaaaattggatgtggtgatgcacccctgtggtcccagctatatgggaggatcccttgagcctgggaagctgaggctgccatgagccactaacatgccactgcactccagcctgggcaacagagaaagaccctatctcaaaaaaaaaagagaaaaaaaaaaaaaaaaaAAAC a score=4262.0 s hg17.chr17_random 594595 38 + 2618010 ----CTGGGGAAACTGTCAACTTCTTAGGTGTGATGATGGGA s panTro1.chr19 35016461 38 - 82489036 ----CTGGGGAAACTGTCAACTTCTTAGGTGTGATGATGGGA s mm5.chr11 86111146 26 + 121648857 ----CTG--------GTCAACCATATAACTGTGAT----GTG s canFam1.chr9 26630171 37 - 53642819 ttttttG----AAATGTCAGCTTTTTAGTTGTGACAATAGC- a score=975.0 s hg17.chr17_random 594633 6 + 2618010 TGACAG s panTro1.chr19 35016499 6 - 82489036 TGACAG s mm5.chr11 86111172 6 + 121648857 TTAAGC s rn3.chr10 76678875 6 + 110733352 TTACAC s canFam1.chr9 26630208 6 - 53642819 TAGCAG a score=10497.0 s hg17.chr17_random 594639 14 + 2618010 TTATGTTTAAAGAA s panTro1.chr19 35016505 14 - 82489036 TTATGTTTAAAGAA s mm5.chr11 86111178 14 + 121648857 TTATGTTTAAAAAA s rn3.chr10 76678881 14 + 110733352 TTGTGTTTAAAAAA s canFam1.chr9 26630442 14 - 53642819 TTATATTTAAACAA a score=17066.0 s hg17.chr17_random 594653 49 + 2618010 GATGATCTAATTATTTTT-AAGCTGGGCAGTAGGTGTATGA----CAGTTCTCC s panTro1.chr19 35016519 49 - 82489036 GATGATCTAATTATTTTT-AAGCTGGGCAGGAGGTGTATGA----CAGTTCTCC s mm5.chr11 86111387 52 + 121648857 AATGACCTGATTATTTCTGAAATTAGGAAGTAGGTATCTGA--GCTAATTATCC s rn3.chr10 76678895 51 + 110733352 GATGACCTGATCATCTCTGAAGTTCAGAAGTAGGTATTTAG---TTAATTATCC s canFam1.chr9 26630456 46 - 53642819 GATGACCTGAC--------AAGCTGGACAGTTGATACATAAGGGTTAATTAGCC a score=5664.0 s hg17.chr17_random 594702 17 + 2618010 TCCTTACAATTGTTTGT s panTro1.chr19 35016568 17 - 82489036 TCCTTACAATTGTTTGT s mm5.chr11 86111439 17 + 121648857 TCCCTATACCTGTATAC s canFam1.chr9 26630502 17 - 53642819 TCCTTACAATTATATAT a score=874.0 s hg17.chr17_random 594719 13 + 2618010 TG----TTTTTTAAAGT s panTro1.chr19 35016585 13 - 82489036 TG----TTTTTCAAAGT s mm5.chr11 86111456 14 + 121648857 CG---ACGTCTTAAGGT s canFam1.chr9 26630705 17 - 53642819 TGTAAAAATTCTAAAGC a score=998.0 s hg17.chr17_random 594732 5 + 2618010 GGGTC s panTro1.chr19 35016598 5 - 82489036 GGGTC s mm5.chr11 86111665 5 + 121648857 TGTTC s canFam1.chr9 26630722 5 - 53642819 AAGTC a score=7033.0 s hg17.chr17_random 594737 20 + 2618010 ACATTATGGGGCATGACCAA s panTro1.chr19 35016603 20 - 82489036 ACATTATGCTCCATGACCAA s mm5.chr11 86111670 20 + 121648857 ATCTTATATTCTGTGATAAA s rn3.chr10 76679184 20 + 110733352 ATCATGTGCTCTGTAATCAA s canFam1.chr9 26630727 20 - 53642819 ACCTTGTACTCCAGGACCAA a score=0.0 s hg17.chr17_random 594757 12 + 2618010 AAAATAATCACC a score=4172.0 s hg17.chr17_random 594757 12 + 2618010 AAAATAATCACC s panTro1.chr19 35016623 12 - 82489036 AAAATAATCACC s mm5.chr11 86111690 12 + 121648857 ATAATAATTAGT s rn3.chr10 76679204 12 + 110733352 ATAATAATCAGC a score=180.0 s hg17.chr17_random 594769 2 + 2618010 AT s panTro1.chr19 35016635 2 - 82489036 AT s mm5.chr11 86111702 2 + 121648857 CT s rn3.chr10 76679553 2 + 110733352 AG s canFam1.chr9 26630747 2 - 53642819 AT a score=23413.0 s hg17.chr17_random 594771 50 + 2618010 CATCATCCTCCTCCTTCTCCACCTACAGCCCAAGGAATGGAAAAAGAAAC s panTro1.chr19 35016637 50 - 82489036 CACCATCCTCCTCCTTTTCCACCTACAGCCCAAGGAATGGAAAAAGAAAC s mm5.chr11 86112023 48 + 121648857 CCCCGTTCTCCTCTTCCTTCACCTACATCCCCCAAAATAGAAAAAGCA-- s rn3.chr10 76679555 48 + 110733352 CCCCATTCTCCTCTTCCTTCACCTATATCTCCCCAAATAAAGAGAACA-- s canFam1.chr9 26630749 50 - 53642819 TATCATTTTCCTCCTCCTCCACCTTCATCCCAAGAAACAGAAAAACAAAC a score=65861.0 s hg17.chr17_random 594821 172 + 2618010 TGTTTTCTCAGATTCTGAGGTGGCAGAAAGACAA----TAACACACTAACTCATTTACTCATAAACA------------TATtgttatggattgaatcgtgtcccttacccaccccccagaaaatttcgtatgttgaaactctaacctctagttcctcagaatgtgaccttatttgga-aagggttatt s panTro1.chr19 35016689 172 - 82489036 TGTTTTCTCAGATTCTGAGGTGGTAGAAAGACAA----TAACACACTAACTCATTTACTCATAAACA------------TATtgttatgggttgaatcgtgtgccttacccaccccccagaaaatttcgtatgttgaaactctaacctctagttcctcagaatgtgaccttatttgga-aagggttatt s mm5.chr11 86112071 157 + 121648857 TATGTCCTCAGATTCTGAGGTAAAAGAAGTTAAA----TAA-----GAATTATTTTAACCATAAGC--------------ATTTTTATAGACTGACCTATGTTCCCT--TGACCTCACA------TTCATGTGTTGACATTCACACTCCTGCTTCCTCAGAAAGTGATCTTATTTGAA-AAGAGTCACT s rn3.chr10 76679603 159 + 110733352 TATTTTCTGAGGTCCTGAGGTAAAAGACATAAGT----TAA-ATAAGCATTATTTTAACCATAAGC--------------ATTTTTATAGACTGAACTATGTTCTCT--TGACCTCACA------TTC--ATGTTGACATTCAAACTCCTGGTTCCTCAGAAAGTGATCTTACTTGGC-AAGGGTCACA s canFam1.chr9 26631574 177 - 53642819 TATTTTCTCAAATTCTGAGGTCGAAGAAAGACAAGAACTAACACACCAACTAATTTACTCATAAACATATTGTTATGCTTATtgttatggtttgagttgtgtccccc--tca----aca------ttcatgtgttgaagctctaactccaagtaccttagaataaaacctaatttgaatgagggtcact a score=20372.0 s hg17.chr17_random 594993 73 + 2618010 gcagatgtaattagtgaagatgaggtcctactggagtagagaggaaccctaatccaatatgcctggtatcctt s panTro1.chr19 35016861 73 - 82489036 gcagatgtaatgagtgaagatcaggtcctactggagtagagaggagccctaatccaatatgcctggtatcctt s mm5.chr11 86112228 58 + 121648857 GCAGGTGTCATTAATATATACTA--TCATACAGGAGAACA-------------CCACTATACCTGCTTTCTCT s rn3.chr10 76679762 52 + 110733352 GCAGATGTCAC------AGACTA--TTATACAGGAGTACA-------------CCACTATACCTGGTTTCTCT s canFam1.chr9 26631951 72 - 53642819 gcagatttaattagttaagatgaggtcattctagagtagggaaga-tcctaatctagtatgactggtgtcctg a score=60589.0 s hg17.chr17_random 595066 355 + 2618010 ataaaaaggggaaattttgccacagatatgcacacaggtagaacaccatgtgaacatgaaggcagagatccaggtgatgcacctacaagccaaagtatgccaaagatgaccagcaaaccaccagaagccaggggagaggca---tggaacataaggtttctcacagttgt-cgaagaaaccaactct---aacaacgtgatctagaactt-tagtctccagatctatgagataataaatttctgttgtctaagccacccagtttgtg-gtactttgttgcagcaagcctagcaaactaatgcaCACATATTCTATATTTTGAA-GAAAAAATTCCCAGAGAATCATATTTAAAAT--GGTTAAATTA s panTro1.chr19 35016934 357 - 82489036 agaaaaaggggaaatttggccacagatatgcacacaggtagaacaccatgtgaacatgaaggcagagatccgggtgatgcacctacaagccaaagaatgacaaagattaccagcaaaccaccagaagccaggggagaggca---tggaacatacagtttctcacagtagt-caaagaaaccaactct---aacaatgtgatctagaacttctagtctccagatctatgagataataaatttctgttgtctaagccacccggtttgtgagtactttgttgcagcaagcctagcaaacgaatgcaCACATATTCTGTATTTTGAA-GAAAAAATTCCCAGAGAATCATATTTAAAAT--GGTTAAATTA s canFam1.chr9 26632023 347 - 53642819 ataaaatgggaaaatatggacgcagatctgcacaaaaggaaa-----atgcaaacataaaagcagagat-caggtgatgt--------gccacggaatgccaaagattggtagcaaacctccagaagctaggagaggcacagagtggaacagaagctatctcacaatcttcctaatgaactaagcctgtcaacaccttgaccttggacatctagtctccagaatt-----ataacgaactactgctgtgtaagccacctagtttgtg-gtactttgttacagcaaccctagcaaactaatacaCATATATGATGTATTTTGAAGGAAAAAATTCCCAGAAAATCAAATTAAAAATAGGGTTGAATCA a score=1774.0 s hg17.chr17_random 595421 19 + 2618010 AGCAAAATAAAACAAACCA s panTro1.chr19 35017291 19 - 82489036 AGCAAAATAAAACAAACCA a score=13727.0 s hg17.chr17_random 595440 72 + 2618010 AAAAAAGAAAAGTCCCAACTACCTGAAATATTTAATTGTCTTAGGAAACTGACTTAAAAATATCTAATACAg s panTro1.chr19 35017310 72 - 82489036 AAAAAAGAAAAGTCCCAACCACCTGAAATATTTAATTGTCTTAGGAAACTGACTTAAAAATATCTAATACAg s canFam1.chr9 26632664 68 - 53642819 AAAGTAAAAAAGTTTCAGTTACTTGAAATAT----TTGTCTAAGGCAACCAACTTAAAAATAGGTAATACAG a score=18837.0 s hg17.chr17_random 595512 297 + 2618010 gccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagttcaagaccagcccggccaagatgatgaaatcctgtgtctactaaaaatacaaaa-atttgctgggcatggtggcaggtgtctgtaatcccagccactcaggaggcagaggca-gagatttgcttgaacccaggaggtggaggctgcag--tgatccgagatcacaccactgcactccagcctgggggacagatcaagactccgtctcaaaaataaaaaaataaaaa s panTro1.chr19 35017382 299 - 82489036 gccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgagcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaacattagccgggcgtagtggcggacgcctgtagtcccagctattccggaggctgacgcaggagaatggcgtgaacccgggaggcggagcttccagtttg--ccgagattgcgccactgcactccagcctgggcgacagagccagattccgtttcaaaaaaaaaaaaaaaaaaa a score=85712.0 s hg17.chr17_random 597351 1083 + 2618010 ctcaaattgtacagaaagaaaaTTTATTAATGTTAAAAAATGTCAATATTCATAGATACACATATATGTGGGGGCAGGTAGAAAGGGAGGGACACAGAGACAAAGAAAATATGGCAAAATGGTAACACCTGGTGATCACTGAACTATTCTTGCAACTC--TGAAAAG-TTTAAAAAATTTCAAAGGTATATTGTTTTTGAACTGCTCGGGAGGTTTAAATTTTTGAATTTTTAAAATAAGCAATCAATTGTGAGGAAGTCTGAGAAGCCACAGACTTAAGAGATAAGATGAAAAATAAGGAAAGTAGAATCACAGTAATAAGAGGAACAGAGTTTCAAAATGCTGTGGTCAGTCAGTAGCTTCAATGCAAAAGAAAGTTAAATTAAGGACCAACTCAGTAAAGACAACTGGATTCAGCAACTGGGAAGTCAGTGATGACCTAGGGTACAGGAGCTGCATTGAAATAGTAGAGTTGGGCCACG---CgtggcccacatctataatccagcagtttgggaggccgaggtaggtggacctcttgaggccaggaattcaagaccagcctagccaacatggtgaaaccccatctctactaaaaatacaaaaattaacccgagacagtggcgcacccctgtaatcccagctactcaggggcctgaggcatgagaactgcttgaacctggaaggcagaggctgcagtgagctgagatagggccactgcacttcagcctgagtgacaggggaagactctgtctaaaaaaacaaaaaaTAggcctggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctactaaaaatacaaaaaattagctgggcgtggtggcaggcacctgtggtcccagctcctccggaggctgaggcaggagaatgacatgaacccgggaggtggaggttgcagtgagctgagattacgccactgcactccagcctgcgtgacaaagccagactccctctcaaaaaaaaaaaaaaaaaaaaaaaaGACGTAAACTGGG s panTro1.chr19 61606835 1072 - 82489036 CTCAAATTGTACAGCAAGAAAATTTATTAAAGTTAAAAAA-GTGAATATTCATAGATATACATATATGTGGGTGCAGGTAGAAAGGGAGGGACACACAGACAAAGAAAATATGGCAAAATGGTATCAACTGGTGATCACCGACCTATCCTTGGAACTCTTTGAAAAGTTTTTAAAAATTGCAAAAGTATATTATTTTTGAACTGCTCAGGAGGTTTAAATTTTTGAATTTTTAAAATAAGCAATCAATTgtgaggaagtctgagaagccacagac-taagagataagatgaaaaacaaggaaagtagaatcacagtaatgaaaggaatagagtttcagaatgctgtg----gtcagtagcttcaatgcaaaagaaagttaaattaaggatgaactcagtaaagacaactggattcagcaactgggaagtcagtgatgacctagggtacaggagcttcattgaaatagtagagTTGGGCCACGGCATgtggcccacacctat-atccagcagtttgggaagccgaggtaggtggatctcttgaggccaggaactcaagaccagcctagccaacgtggtgaaaccccatctctactaaaaatacaaaaattaaccagatatagtggcacgcccctgtaatcccagctactcagggagctgaggcatgagaactgcttgaacctggaaggcagaggctgcagtgagccgagacagggccactgcactccagcctgggtgacagggcaaga--ctgtct-aaaaaccaaaaaaTAGCccaggcgtggtggctcatgcctgtaatctcagcactttgggaggccgaggcagttggatcacaacgtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggtggcgggcgcctgtggtcccagctcctcgggaggctgaggcaggagaatggcatgaacccgggaggtggagattgcagtgagctgagatcacgccactgcactccagcctgggcaacaaagcaaaaccccctctcaaaataaaaaaaaaaaGGAA-------GTAAACTGGG a score=9220.0 s hg17.chr17_random 598434 68 + 2618010 TATGTGCCTTTAGAGGTGGTGCACATTTTTAGCATTATAAATGAATATAAATGAGTGGCAATTGTTAC s panTro1.chr19 61607907 68 - 82489036 TATCTGCCTTTAGAGGTGTTGTACGTTTTCACCATTATAAATGAATACAGATGAGTGGACATAGTTAC s canFam1.chr9 15523246 63 - 53642819 TATGTGTGTTT-GTGGTGGTATGCATTTTTAGTATGATAAATTG----AGATGAGTGGCAATATTTAC a score=15731.0 s hg17.chr17_random 598502 122 + 2618010 TTTGGTCCACAGATTTTTGGTATCT----TAACTAGTTTTTGG-TCTCTTCCACTAAAGGCATTG-CCTGTTGAACC------TTgttaggaatgtaagtactgaa-ggcaaac--tgcctgggtttgaattttgtt s panTro1.chr19 61607975 121 - 82489036 TTTGGTCCATAGATTTTTTGTATCT----TAAC---TTTTTGGATCTCTTCCACTAAATGGACTGCCCTGTTGAACT------TTCTCTGGAATGTAAGTACTGAATGGC-AAC--TGCCTGGGTTTGAATTTTGTT s rn3.chr10 63111807 112 + 110733352 TTTGGCCTACAGATTTTTTTTTTCTGTTGTAACCGGTTCTTGA-TCTC-TACAGTAGAGTGAGTG-ATTGTAGGAAC---------------ATATTGGTACTGAA-GACAAA------GTGGATTTGAATTTTGAC s canFam1.chr9 15523309 130 - 53642819 TTGAGTATAAGCATTTTTGGTGTCA----TGGTGGACTGTGGA-TCTGAGCCACTCAAATGATTG-GCTGTTGagcatagtagtggttaggaatgtgagcactgga-ggcaggctgtgtctaggtttgaatTTTTTT a score=236.0 s hg17.chr17_random 598624 17 + 2618010 ctgtcccttgcACCctg s panTro1.chr19 61608096 17 - 82489036 CTGTCCCTTTCACCCTG s rn3.chr10 63111919 16 + 110733352 TTTTGTCTTGGAATTG- a score=2751.0 s hg17.chr17_random 598641 14 + 2618010 cctggtttcaaatc s panTro1.chr19_random 7889599 14 + 57627672 cctggcttcaaatc s rn3.chr10 63111935 14 + 110733352 CTTTGGTTCAAATC a score=1119.0 s hg17.chr17_random 598655 5 + 2618010 c--tagc s panTro1.chr19_random 7889613 5 + 57627672 c--tagc s rn3.chr10 63111949 7 + 110733352 CTGTAAC s canFam1.chr9 15523821 5 - 53642819 c--TAGC a score=15684.0 s hg17.chr17_random 598660 73 + 2618010 -----tctgcttattacgttcttttaaggggatgacctttgagcaaat-----------------gtcttagctt---------------------------ctgttttccccagtaaatgg s panTro1.chr19_random 7889618 73 + 57627672 -----tctgcttattaagttcttttaaggggatgatctttgagcaaat-----------------gtcttagctt---------------------------ctGCTTTCCCAAGTAAATGG s mm5.chr11 75367411 65 + 121648857 -----TTTTTTTTTTAAGTTCTTGCAAGTTGATGGCCTTTGGACAAAT-----------------GTTCTAGCTT-----------------------------------TAAAATAAATAG s rn3.chr10 63112007 60 + 110733352 -----TGTTTTTTTGAAGTTCTTATAAGTTGATGGCCTTTGGGCAAAT-----------------GTTCTATCTT----------------------------------------TAAATGA s canFam1.chr9 15523826 122 - 53642819 TTTTTAATTTTTATTCCATCCCTTAGAAGCTGTGACCTTAGGCTTTATAGCCTACATTGGTTCAGATCCTAGCTCTCCTCCTTTTGGCTAAATACTATATAATCGTTTCCCCATGTAAATAG a score=2163.0 s hg17.chr17_random 598733 5 + 2618010 acaca s panTro1.chr19_random 7889691 5 + 57627672 ACACA s rn3.chr10 63112067 5 + 110733352 ACACA s canFam1.chr9 15523948 5 - 53642819 AGACA a score=0.0 s hg17.chr17_random 598738 1 + 2618010 a a score=91.0 s hg17.chr17_random 598738 1 + 2618010 a s panTro1.chr19_random 7889696 1 + 57627672 A a score=546.0 s hg17.chr17_random 598739 2 + 2618010 ta s panTro1.chr19_random 7889697 2 + 57627672 TA s canFam1.chr9 15523953 2 - 53642819 TA a score=5982.0 s hg17.chr17_random 598741 120 + 2618010 gttgctactttgTGAAAG------ATTCATGTAATTGACCAGCATTTACCAAGTAGCATCAGTGTTTAGTTTCAGTCATTGGTGATTC-TGCAGTTGGACTGTGAGGGGGTATTGGGGTGGGGGGTG-- s panTro1.chr19_random 7889699 110 + 57627672 GTTGCTACTTTGTGAAAG------ATTCATGTAATTGACCA----------AGTAGCATCAGTGTTCAGTTTCAGTCATTGGTGATTCATGCAGTTGGACTGTGATGGGGTGTTGGGGTGGGGG-TG-- s mm5.chr11 75367879 70 + 121648857 GTTGGTACCTTACAATGGGAATTAATTCATGTAAGTG----------------------------------------CTTGGTTAGTC-TTTAGGTGAACTGTG---------------GGGGG-TT-- s rn3.chr10 63112485 85 + 110733352 GTTGGTACCTTATAATGGGAATTAATTCATGTAAGTGCCTC-----------------ACACTCTTGAGT-------CCAGGTGATGC-TTTAGGTGAACTGT----------------GGGGG-TT-- s canFam1.chr9 15523955 108 - 53642819 GTTTCTACCTTGTTAAATATGCTAAT-----TAAGTATGCAGCACTTGTAAATAGCAATCAGTATT-----------ATACTCAGTTC-TGTAGCTAAACCATG---AGGTTGTTGGGTTGGTG-TGTT a score=-6540.0 s hg17.chr17_random 598861 123 + 2618010 GTGTGTGTGT--------------AGCACTTAATTGCAGGCA-GGAAGGAAAAGATACTTTTGATAACCGACAGGCAGCTTTTCTCTGCTTTTGT----GTCAAA----AGGGAGGAAG--------------------------------------------------------------------GGAGTTTGGAGAGGGAA-ATGAATTCTC s panTro1.chr19_random 7889809 125 + 57627672 GTGTGTGTGTG------------TAGCACTTAATTGCACGCA-GGAAGGAAAAGATACTTTTGATGACCGAGAGGCAGCTTTTCTCTGCTTTTGT----GTCAAA----AGGGAGGAAG--------------------------------------------------------------------GGAGTTTGGAGAGGGAA-ATGAATTCTG s mm5.chr11 75367949 91 + 121648857 GTGTATGCTT--------------------TAA----------------AGAAGAGGCTTTCTATA-------------CTCTTACCAGTTTTCT----ATCAACTTTTAAGGACTAGGTCT----------------------------------------------------------------AAGGATTTGGAGACATAC-ATG------C s rn3.chr10 63112570 93 + 110733352 GTGTGAGCTT--------------------TAA-------------GGAAGAAGAGGGTTTCCATA--CTTGTAACAGTTTTCTGTCAACTTAAG----GTT-------AAGGAGTAAG----------------------------------------------------------------------AATTTGGAGATATAACATG------A s canFam1.chr9 15524397 208 - 53642819 gtgtgtgtgtAGGGGGTTGGTTTTGGTTTTTGTTTTTTAGCATGTAGAAGGAAGATAATGTC--TAACCTGGAGACAGCTTTTCTCTGCTTTTTTTAAAATCAAG----AGCAGGGGAGATTCAGCATTTTTTAAatttatttatttatttatttatttatttatttatttatAAAAATTTTTAAAAAAGATTTAGATAGAGAT-GTGTATTCTG a score=1449.0 s hg17.chr17_random 598984 20 + 2618010 ------TGTAACACTAAGCTCTCTTC s panTro1.chr19_random 7889934 20 + 57627672 ------TTCAGTACTAAGCTCTCTTC s mm5.chr11 75368040 16 + 121648857 ------TTTAAGACTTGGTTCT---- s rn3.chr10 63112663 20 + 110733352 ------TTTAAGACTAGGTTCTTCTC s canFam1.chr9 15524605 18 - 53642819 ------TTTA--CTCTGGCTCTCTTC s danRer1.chrNA 195171587 22 - 390413307 TGTTATTTTG--AGCAGTTTCTTT-- a score=-3354.0 s hg17.chr17_random 599004 30 + 2618010 CTCAAAACCAGA-GGTAGATAGAATGTGTAA------- s panTro1.chr19_random 7889954 30 + 57627672 CTCAAAATCAGA-GGTACATAGAATGTGTAA------- s mm5.chr11 75368056 24 + 121648857 -------TCAGATATTATATTTAGAATATAA------- s rn3.chr10 63112883 28 + 110733352 CTAAAGATTAGA-CTCAGGTGGAA--TATAA------- s canFam1.chr9 15524623 26 - 53642819 CTCAAAACCAGTGGGCAAATA-----TGTCG------- s danRer1.chrNA 195171609 37 - 390413307 CTTAACCTGAAA-TGTGATCTGTGTGTATATGACAGCA a score=-14632.0 s hg17.chr17_random 599034 23 + 2618010 TAATT----TACAGAATTTCTAGACTT s panTro1.chr19_random 7889984 23 + 57627672 TAACT----TACAGAATTTCTAGACTT s mm5.chr11 75368080 8 + 121648857 TAA------------------AGACT- s rn3.chr10 63112911 3 + 110733352 TTG------------------------ s canFam1.chr9 15524649 12 - 53642819 TAA---------------TTCATGTTA s fr1.chrUn 102748365 23 + 349519338 TGATC----CTCAGGATCTCTAATCTT s danRer1.chrNA 195171646 23 - 390413307 TAATTACTCTGCCATATCTCCTC---- a score=483.0 s hg17.chr17_random 599057 10 + 2618010 CAACGATCTG s panTro1.chr19_random 7890007 10 + 57627672 CAACAATCTG s mm5.chr11 75368088 4 + 121648857 ------TTTG s rn3.chr10 63112914 4 + 110733352 ------CCTA s canFam1.chr9 15524661 10 - 53642819 CAATTAAGTA s danRer1.chrNA 195171669 10 - 390413307 TTACATTCTG a score=0.0 s hg17.chr17_random 599067 26 + 2618010 atttttttaatttatttttatttttt a score=-459.0 s hg17.chr17_random 599067 26 + 2618010 attttttt--aatttatttttatttttt s panTro1.chr19_random 7890017 28 + 57627672 AATGTTTTAAAATTCATTTTTATTTTTT s mm5.chr11 75368092 26 + 121648857 AATTGCCA--AAGTTAATTGGATGTTTT s rn3.chr10 63112918 17 + 110733352 AGTTAATC-----------TGGTGTTTT s canFam1.chr9 15524671 26 - 53642819 AACAAACA--ATTTTTTACTTTTTTTTT a score=135028.0 s hg17.chr17_random 599093 97 + 2618010 C-------AGGTTGAGACTGAGCTAAAGTTAATCTGTGGCGACGTTCTGGATGTACTGGACAAAGACCTCATTCCAGCAGCTACAACTGGCAAGTCCAAGGTTT s panTro1.chr19_random 7890045 97 + 57627672 C-------AGGTTGAGACTGAGCTAAAGTTAATCTGTGGTGACATTCTGAATGTACTGGACAAACACCTTATTCCAGCAGCTAACACTGGCAAGTCCAAGGTTT s mm5.chr11 75368118 104 + 121648857 CCCTCCCTAGGTTGAAACTGAGCTCAAGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAACACCTCATTCCAGCAGCTAACACTGGCGAGTCCAAGGTTT s rn3.chr10 63112935 104 + 110733352 CCCTCCCTAGGTTGAAACTGAGCTCAAGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAGCACCTCATTCCAGCAGCTAACACTGGCGAGTCCAAGGTTT s canFam1.chr9 15524697 97 - 53642819 C-------AGGTTGAGACTGAGCTAAAGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAACACCTCATTCCAGCAGCTAACACTGGCGAGTCCAAGGTTT s fr1.chrUn 102748395 97 + 349519338 -------CAGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAGTCCAAGGTTT s danRer1.chrNA 195171679 97 - 390413307 -------CAGGTTGAGAATGAGCTGAAATCTATTTGTAACGACATACTGGATGTACTGGACAAACACCTCATTCCTGCAGCAAACACCGGAGAATCCAAAGTTT a score=33300.0 s hg17.chr17_random 599190 28 + 2618010 TCTATCATGAAATGTAGGT-TCTATACTA s panTro1.chr19 46020692 28 - 82489036 TCTATTATGAAATGTAGGT-TCTATACTA s mm5.chr11 75368222 28 + 121648857 TCTATTATAAAATGTAGGT-TCTATACTA s rn3.chr10 63113039 28 + 110733352 TCTATTATAAAATGTAGGT-CCTATACTA s canFam1.chr9 15524794 28 - 53642819 TCTATTATAAAATGTAGGT-TCTATACTA s fr1.chrUn 102748492 28 + 349519338 TCTACTACAAGATGTAAGT-TTCTGCCCA s danRer1.chrNA 195171776 24 - 390413307 TCTACTACAAAATGTAGGTGTCTG----- a score=-9865.0 s hg17.chr17_random 599218 51 + 2618010 ACAAT-TAACAAGTGTACTTCAATAAATTTAAACATTC---------TCAGGAATAGTTGA s panTro1.chrUn_random 143959882 51 + 240967748 AAAAT-TAACAAGTGTACTTCAATAATTTTAAACACGC---------TCAGGAATAATTGG s rn3.chr10 63113073 61 + 110733352 AAAATGTAAGATGTAAAGTTGTAAAGATGTAGATTTTCAACTTTTATTTAAAAATAGTTGA s canFam1.chr9 15524822 45 - 53642819 GAAGG-GAAAATGTCAGATT----AAATGTTAGCCCCC---------TTAGAATTATCA-- s fr1.chrUn 102748520 41 + 349519338 GGAGA-TGAGGAGGATGCTCCTCT----------CTGC---------TCAACATTAACTGC s danRer1.chrNA 195171800 48 - 390413307 -ACAA-TTTCAAGTCT--TTCTAGGTCTTTCAGAACAT---------TTTGGACTGAGTTA a score=3091.0 s hg17.chr17_random 599269 10 + 2618010 CTTTGTTTCT s panTro1.chrUn_random 143959933 10 + 240967748 CTTTGTTTCT s canFam1.chr9 15524867 10 - 53642819 CTTTTTTTTT s fr1.chrUn 102748570 9 + 349519338 -ATTCTTTAT s danRer1.chrNA 195171848 10 - 390413307 CATGTGTTCT a score=266.0 s hg17.chr17_random 599279 5 + 2618010 -TTTTT s panTro1.chrUn_random 143959943 5 + 240967748 -TTTTT s fr1.chrUn 102748580 5 + 349519338 -TTTGT s danRer1.chrNA 195171858 5 - 390413307 GTTTG- a score=6406.0 s hg17.chr17_random 599284 78 + 2618010 TCTTAGAC-ATTTCATATT--------ATTTTCCTTATTAAATATAACCAAAAAT-----CCCACAGAAA-------TTAACTGAGGAGCCTCTAAATA s panTro1.chrUn_random 143959948 78 + 240967748 TCTTAGCT-ATTTCCTATT--------ATTTTCCTTATTAAATATAACAAAAAAT-----CCCACAGAAA-------TTAACTGAGGAGCCTCTAAATA s danRer1.chrNA 195171863 99 - 390413307 TTTTATATGATATCAAACTTGAATCGCATTTGTCTTTTTTGGTAGATTTAGACATTTGCACTTAAAAAAATGAATGCTTACTGGAGAAATCTGTGAATA a score=9233.0 s hg17.chr17_random 599362 106 + 2618010 TCAACAAAGTTATCACTTGATAGACTAGAATTAAACAAGCAAGTGGTTCCAAGAAATGGCACGAGTGTATTAATCATAAAATAAAATTTCTACATGAAACATTCAG s panTro1.chrUn_random 143960026 106 + 240967748 TCAAGAAAATTATCACTTGATAGACTAGAATTAAACAAGCAAGTGGTTCCAAGAAATGGCACAAGTGTATTAATCATAAAATAAAATTTCTACATGAAACTTTCAG a score=873.0 s hg17.chr17_random 599468 3 + 2618010 CCA s panTro1.chrUn_random 143960132 3 + 240967748 CCA s canFam1.chr9 23406141 3 - 53642819 CCA a score=-125.0 s hg17.chr17_random 599471 5 + 2618010 TTCTA s canFam1.chr9 23406144 5 - 53642819 CTTAG a score=36337.0 s hg17.chr17_random 599476 256 + 2618010 GACCATTTCTGTCTGTGCAGACTCATCTTTTCCTGTTCTTTGCAAAGCCCAGCTAGAGCAAGCAAGTTCTTCCCAATAGGTTTTTCCCATCTCTGGTTGCTTGGCTGGCTGGGCTTCCTCTACAAAC---CCCCTTCCTTTCCCCTAAGCAGGGCCCG-GTGTCCCC-ATCCCGCGGAGTTGAGC----TCATGAGGGCATCTGACCAGGAGTAGCTATTCCTGGTGCTATTGTCATTGTCCTGTTTCATGTGTGAACATGGCTG--- s panTro1.chr19_random 16337214 258 - 57627672 GACCATTT--GTCTGTCCAGACTCATCTTTTCCTGTTCTTTGCAAAGTCCAGCTAGAGCAAGCAAGTTCTTCCCAATGGGTTTTTCCCATCTCTGGTTGGCTGGCTGGCTGGTCTTCCTCTACAAACCCGCCCCCCCCTTTCCCCTAAGCAGGGCCTG-GTGGCCCCTGTCCTGTGGAACTGGGC----TCATGAGGGCATCTGACCAGGGGCAGCTATTCCTGGTGCTGTTGTCATTGTCCTGTTTCATGTATGAACGTAGCTG--- s canFam1.chr9 23406149 257 - 53642819 GACTGCTCCTTCCTGCTCAGACCCATCTTTTCCTCTTCTCTGTGAAGCCCAACCAGACAAAGCAGTCTCTGTCCTGTGGG-ATTTCCCATTTC----TGCCTAGTAGACTGGGCTTCCCC--CCTAC---TTCTCTCCCTTTCCCTAGGCAAGACCCATACAGCCCC-ATCATGAGGAGATGAGACAGGCCAGGGGGGCTGCTGACTGGAGGCAGCTAATCTTGGGGCTGTCATCATTGTTCTGGTTCATGGGAGAGCATAGCTACTA a score=19866.0 s hg17.chr17_random 599732 182 + 2618010 GCTCTACAGAGATTTGGCGG----GTA--GCAAGGAGGTTTCTTTTTGAATCTTCTTTTGGAAGT----CAGACTTGATGAGGATCTTATGCCCACTTTTTCCTAGCTCTGTGGTGTCAGGCAAAGTCT--GTTtctgcaaatgggggttaagaattcctacctcacagcagtcttttgataaataaataagat s panTro1.chr19 35036145 184 + 82489036 GCTCTACAGAGATTTGGCAG----GTA--GCAAGGACGTTTCTTTTCAAATCTTCctttggaagt----cagacttggtgaggattgtatgcccaccttttcctagccctgtggtgtcaggcaaagtctcagtttctgcaaattggggttaagaattcctacctcacagtggtcttttgagaaataaataagat s canFam1.chr9 23406406 172 - 53642819 GCTCCACAGAACCTTggcagcagtgtagtgtactgaggttt-------------------gaagtcatgcagaccccattctgacccaggcccctcgtcttcctagctctgaagtttcgtacaagttac---ctaccctaaaataggaataatagttcatgccccacagagttgttctaaggattaaacaagat a score=2147.0 s hg17.chr17_random 599914 23 + 2618010 cttaagtgtaaaTTATTCCACTA s panTro1.chr19 35036329 23 + 82489036 cttaagtgtaaaTTATTCCACTA a score=355.0 s hg17.chr17_random 599937 12 + 2618010 GAAATTGCACAG s panTro1.chr19_random 16337497 10 - 57627672 GAAATTGCA--A a score=25411.0 s hg17.chr17_random 599949 188 + 2618010 TCACTTTGGTCTTC--ATCCTGGAGGTCCACTGACAAGCCT-CATGCAAACCTGTGGCCCTGTTCAT---AAAGTGTTTTGATCCATACTTTCAAATGGCCTCAGGAAGACCTTT---TATAAAGTAAAAATGTTAGGCAG-CCACATGATA----------TCCATTGACCCAGTGAGGC---------------TGTTTTACTGGATATAAGAGGTTTGAc s panTro1.chr19_random 16337507 190 - 57627672 TTACTTTGGTCTTC--ATC-TGGAGGTCCACTGAGAAGCCT-CATACAAACTTATGGCCCTGTTCATCTTAAAGTGTTTTGATTCATACTTTCGAATGGCCTCATGAGGACCTTT---TATAAAGTAAAAATGTTAGGCAG-CCACATGATA----------TCCATTGACCCAGTGAGGC---------------TGTTTTACTGGATATAAGAGGTTTGAc s canFam1.chr9 23408738 218 - 53642819 TTACCTTGGTCTCTGGGTC-TGCAGACCCATTGACAAGCCTCCATTCAAACCCAGGG-CCTGTGCACCTATAAGTGTTTAGATTTGTATTTTCAAATTGGCCCAGGAAGACTGTTACATGCAA---AAAAATGAGAGGCAATCCACAGGGTAGTAGTAGAACCCCTTTGACTCAATGATGCTATTAAACAGCTTTGTATTTTATTAGTTACAACAGATTCCAC a score=20487.0 s hg17.chr17_random 600137 288 + 2618010 ccggcattttggggggccgagacaggcagatcacttgaggccaggagctggagacctgcctggccaacatggagaaaccccatctctattaaaaataccaaaaaaa-ttagctgggcatggtggcacatgcctgtaatcccagctacttgggagactgaggcacaagaatcgcttgaacccgggagtcagaggttgcagtgagccaagccgagatggcgccactgcactccagcctgggcagcagagtgagactctgtctcaggggaaaaaaaaGGGTGAGGGGAGGGT s panTro1.chr19_random 16337697 282 - 57627672 ccagcactttgggaggctcagacaggaggatcacctgaggccaggagctggagaccagcttggccaacatggcaaaaccccatctttattaaaaatacaaaaaaaaattagcctggcatggtggcacatgcctgtaatcccagctactcgggaggctgaggcacaggaatcacttgaacc-gggagttggagggtgcagtgagctgagctgagatggtgccactgcactccagcctgggcaacagagtgagactctgtctcaggaaaaaaaaaaaaaaGAGG------T a score=62061.0 s hg17.chr17_random 600425 385 + 2618010 TTGAAAAAATAGTAGCATGTAGTTATGTTTCTACAATATTTGATATATATAAGGATTTACCAACCTCTTGCATTAGCTGCTATCCCCTACAG-----CAGTTGCTGTAGGAAAAAAACATCAAGTTCtgagctcctactgtttgccaggcatattctgagatgatcacgttgaaatctcagagttaccctgcagagtagtc-agggtatcactgcctgacagatgaagaagctgaggcttccagcagataaatgacttaccccaggccacatagaaaatgagtgggagagcccaggtctgtctgTGAGGTATAATGAAATTAGCATAAACCCTCCACATTGGCGC---CACTcgcataaattaacatat----attctctcacagaaagtattttatt s panTro1.chr19_random 16337979 387 - 57627672 TTGAAAAAATGGTAGCATGTACTTATGTTTTCACAATATTTGATGTATATAAGGATTTACCAACCTCAGGCATTAAGTGCTATCCCCAAAAGACATGCAGTTGCTGTAGGAAAAAA-CATCAAGTTCtgagctcctactgtttgccaggcatattctgagatgatcacgtttaaatctcagagttaccctgcagagtagtc-agggtaccactgcctgacagatgaagaagctgaggcttacagcagttaaatgacttaccccaggccacatacataatgagtgggagagcccaggtctgtctgTGAGGTATAATGAAATTAGCATCAACCCTCCACATTGGTGC---CACTTGAATAAATTAACATAT------TCTCTCACAGAAAGTATTTtatt s canFam1.chr9 23408961 377 - 53642819 TTTGACAAATAGTAGCATGTCCTTA--ACTTGACAATATTTGATCCCTAGGAAGATTTACCAACCTCATGCAATAACTACT-TCCCCAAAAGACA--CAGTCACTGTGGGAAGAAA-CACCAAGTTCtgagctcctgctatttgccaggcagattctgagattattgattttaaatctc--agttaccctgcagagcagttgaaaatatcactgttacacaaatggagaaactgaggctcactgcagttaaatgactcagccatggccacgtagata------gGGTCTACATAGG---GTCTGTGAA--AAAATGAAATTAGCACAGGCCCTCTG-GTAGGGGCCTTCATTTGTATGCATTAACATATACCAATTCTCTC-TACAAAGTATCCCATT a score=4417.0 s hg17.chr17_random 600810 59 + 2618010 gggcataacagtttgtatcatttaccgtttaacattagccgtggatcttcccacatcac s panTro1.chr19_random 16338366 59 - 57627672 gggcataacattttatatgttttaccatttaacattagttgtggatcttcccacatcac a score=447.0 s hg17.chr17_random 600869 4 + 2618010 atga s panTro1.chr19_random 16338425 4 - 57627672 ataa s mm5.chr11 83332498 4 + 121648857 ATGC a score=11428.0 s hg17.chr17_random 600873 48 + 2618010 ctatgcctcattctttttggataatatgattactattgaatggattta s panTro1.chr19_random 16338429 48 - 57627672 atatgcctacttctttttggattatatgattactaatcagcggattta s mm5.chr11 83332502 47 + 121648857 ATAAACCTTATTCTTTGGGGATTTTATGAGTTC-AGTGAATGGATTTA s canFam1.chr9 23409538 48 - 53642819 cTCCACATCATTCTTTTTCGGTTATATGATTACTAATGAGTGACTTTT a score=300.0 s hg17.chr17_random 600921 1 + 2618010 c s panTro1.chr19_random 16338477 1 - 57627672 c s mm5.chr11 83332549 1 + 121648857 C a score=21597.0 s hg17.chr17_random 600922 90 + 2618010 tatcattcacttaatcaatactccttttgatggccattttaattgtcta---ttttttccttttgcacagattggtgtaataaacgtgatttt s panTro1.chr19_random 16338478 93 - 57627672 tagaattcatttaactaataccacttttgattgtcattttatttgcctaatgttttttccttttgcacagatagatgtaataaacatgatttt s mm5.chr11 83332550 89 + 121648857 TGTAATTCACTTAACCAATAACCGCTT--ATGGCCATGTCATTTGCTTGA--CATTTTGCTATTGTGCTGGCTGCTGTAGTGAACATCATGCT s canFam1.chr9 23409783 92 - 53642819 Tataattcatttacctaatgccctttt-gacagtcatttcatttactttacattttctgctattgtgtagatcgctgtaatgaatgtgatttt a score=0.0 s hg17.chr17_random 601012 6 + 2618010 atagta a score=273.0 s hg17.chr17_random 601012 1 + 2618010 a s panTro1.chr19_random 16338571 1 - 57627672 a s mm5.chr11 83332639 1 + 121648857 A a score=698.0 s hg17.chr17_random 601013 5 + 2618010 tagta s panTro1.chr19_random 16338572 5 - 57627672 tagta s mm5.chr11 83333663 5 + 121648857 CACTA a score=18648.0 s hg17.chr17_random 601018 97 + 2618010 atatttttgtctgcctgtgaaaatgtttgctggacaataaattcctaggagtcaaataag---gtcaaagattataaatacagtatttattttcataaat s panTro1.chr19_random 16338577 97 - 57627672 atatttttgtctgtctgtgaaaatgtttactgtacaataaactcctaggagtaaaaccag---gtcaaagattataaatacagtatttattttcataaat s mm5.chr11 83333668 68 + 121648857 ATACATT-------CTGGGGAGATGAAGCCTG-----TGAATTCTTAGAAATGAAATTGT---------AATTATAAATAA-----------TTATAAAT s canFam1.chr9 23409875 95 - 53642819 atatttttgtgcacctgtggaaatggttccttgagaataaattcctaggagagaaattataaggtcaaaagttatgaatat-----ttGTTTTCATAAAT a score=30719.0 s hg17.chr17_random 601115 282 + 2618010 attaccaagtC-AGCCACAAATGTTTAAATTACTAATGGTTTCAGATTATTGTATTTAATGAGTAAACACTTTTATAGGGTTTacttttatga---acacttttatttgccagatatcattctaagtcctttacaaaattaacttttttaatttgtaatataaccctgagatgtatattaggattatcccca-ttctacagata-----agaacactgagaagttaattaa---cttgccacatatctaggaagtgacaaggctagttgcacagccaggcagtctggctcctgag s panTro1.chr19_random 16338674 282 - 57627672 attatcaagtC-AGCCACAAGTGTTTAAATCACTAATGGCTTCAGATTATTGTATTTAATGAGTAAACACTTTTATAGTGTTTGCTTTTATAA---ACACACTtatttgtcagatatcattctaaatgctttacaaaattaactttttcaatttttaatataaccctgagatgtatattatgattatcccca-ttctacagata-----agaacactgaggagttaattaa---cttgccacatatctaggaaatgacaaggctagttgcacagccaggcagtctggctcctgag s mm5.chr11 83333736 264 + 121648857 GTTATCAAACCAAGAAGCAAATG-CTGGGTCACAGACGGTTTCCAGTCATTGTATTTAA-AAGTAAGAAC-TTTATTGAGTGTACTTTTACAAAGGAAACACTTATGTTCCAGGCTCTGTACTAGATGCTTTGTGAGATTTACTTCTTTGGTCTTTAATGTCTTTC--------ATCTCGGGAAAACACGTGTTTCTATGGATGTTGATAGTACTCTGATACATTGAGTAGAGCTTTCCCACAGTCCTTTGGGATGAGA---------GTATA-----------TGTCTCCTGAG a score=3029.0 s hg17.chr17_random 601397 32 + 2618010 tccacattttagacaacactatacCTCCTGGT s panTro1.chr19_random 16338956 32 - 57627672 tccacattttagacaacactatacCTCCTGGT a score=21186.0 s hg17.chr17_random 601429 166 + 2618010 TCTTTTGAGGCATTACTGCTGGAACTATCCTAATACTCATAAATAAACATTTCTTTTGGGGAGGGCCAAATAAAATTTTA------AACAGAAAAGT-TTTCACCAACT----GTCAAGCTCATAAA-GTTGTACGTTATACAC-TTTTTTCATGATGCCCAC-AGATAATTTATTAATG s panTro1.chr19_random 16338988 168 - 57627672 TCTTTTGAGGCATTACTACTGGAACTACCCTAATACTCATGAATAAACATTTCTTTTGGGGAGCGTCAAATAAAATTTTA------AACAGAAAAGCGTTTCACCAACT----GTCAAGCTCATAAAAGTTGTACATTATACAC-TTTTTTCATGATGCCCAC-AGATAATTTATTAATG s mm5.chr11 83334035 170 + 121648857 TCCTTGGAGGTATG--TTCCAGAATTACTGTAACCCTCATAGGTAGACATTTCTCTGGGACAGGAAGATGTTATATTTAGCCTTGCAACAGAGAACTAGTCCACTAGCTAAAGGCTGTGGTTACAGA--------ACCATACACTTTTTTTCATGATGCCCACAAAATAATTTATTAAGG a score=14815.0 s hg17.chr17_random 601595 126 + 2618010 ATATCATCTATTTTAAAAGACGTATGTAAAACCCAACCCTTAAGAAAGGATTCCTATCACTGTTCCC-ACAGGCACCCTCCTCAGTCTTATACCTTTCCATTCCACCCCCCAAAACAAATCATTCAG s panTro1.chr19_random 16339156 122 - 57627672 ATATCATCTATTTTAAAAGACATATGTAAAACCCAACCCTTAAGAAAGGACTCCTATCACTGTTCCCCACAGGCACCCTCCTCAGTCTTACACCTTTCCA-----CCCCCCAAAACAAATCATTCAG s mm5.chr11 83334363 116 + 121648857 ATATCATCTAATTAAAACAATGTATCTAAATCTGAGGCTT--AGGAAGGATTCTGATTAA----CCC-ACAGACACCTGACTCCTTCCTATACCCTTTCTTTT--TTCCACAAGAATAATCCT--AT a score=23208.0 s hg17.chr17_random 601721 141 + 2618010 CATATTTAT-------TTCATAC---TGTAATATAGGAAGTAGCTTCTTTTTAGATTTTCTTAGATTATTAACATTGATCATACAAACATGGAATAGAAATTCCTTATGTTTTATCTGGATTTAAGGTGCTACATAATGGAATCTATTTCT s panTro1.chr19_random 16339278 140 - 57627672 CATATTTAT-------TTCATAC---TGTAATATAGGAAATAGCTATTTTTTAGACTTT-TTATATTATTAGCACTGATCATACAAACATGGAATAGAAATTCCTTATGTTTTATCTGGATTTAAGGTGATACATAATGGAATATATTTCT s mm5.chr11 83334479 99 + 121648857 CATAATACC-------GTAACTA---TATAATATAATGTATAG-----------------TTATATTA-TAACATT----ATATA--------------------TAAGTTTTATCTAGATGAAAGACGTTGTAATGTAGGGCTCATTTCT s canFam1.chr15 40628565 151 - 67237905 CATATCTATTCATATATTCATACCTATATAATATGGGTAATAGCTACTTCTTACATTTCCGAGTGTTATGAATATCAGTCATGGGAATATTGAATAGAAATTCCTCATATTTCATCTAGATTCAAGACACTACAAAATGAAATGTATTTCT a score=91.0 s hg17.chr17_random 601862 1 + 2618010 A s canFam1.chr15 40628716 1 - 67237905 A a score=91.0 s hg17.chr17_random 601862 1 + 2618010 A s panTro1.chr19_random 16339418 1 - 57627672 A a score=12133.0 s hg17.chr17_random 601863 60 + 2618010 TCAAGCCATACACATTGGAGATAATGAAATCACTTGTGTTCTAGCCTAAACGTTATGGGA s panTro1.chr19_random 16339419 60 - 57627672 TCAAGCTGTACACATTAGAGATAATGAAATCACTTGTGTTCTAGTTTAAACATTATGGGA s mm5.chr11 83335990 50 + 121648857 TTAAGTTACATACACTAGATATAGTG-----ACATGAACTCCTACTTAAACATTA----- s canFam1.chr15 40628717 56 - 67237905 TCAAGCCACATATACCAGATATAGCAA----ATGAATATTCTAGTTTAAAAATTATGAGA a score=4380.0 s hg17.chr17_random 601923 16 + 2618010 ATTTCAGAACTGCAAC s panTro1.chr19_random 16339479 16 - 57627672 ATTTCAGAACTGCAAC s mm5.chr11 83336040 12 + 121648857 ----CAGAACTACCAC s canFam1.chr9 23404301 16 - 53642819 ATTTTGGAATTGTAAG a score=28392.0 s hg17.chr17_random 601939 179 + 2618010 ATAACAGATAATCCTTGGACGAAAACTAAATCTCTCCTCTGGTCAGGCATCTATGTGCATCAGTGAAGAGAAGACGGGGACTGTG-GAAGGGAAAACAGTGAGTCAGGAAGGACTGTGGCCACATCTGTTCCCCGGACCCTCAAGTAGTTAAATCCTGACCTCCTCTACCCCAGACTGTC- s panTro1.chr19_random 16339495 179 - 57627672 ATAACAAATAATCCTCGGATGAAAACTAAATCTCTCCTCCGGTCAGGCATCTATGTGCATCAGTGAGGAGAAGACAGGGACTGTG-GAAGGGAAAACAGGGAGTCAGGAAGGACTGTGGCCACGTCCATTCCCCGGTCCCTCAAGTAATTAAATCCTGACCTCCTCTACCCCAGTCTGTC- s canFam1.chr9 23404317 168 - 53642819 ---------ACTCCAAAGCTTTGAACTGAGCTTTTCCTCTTATCAGGCATCTGTGAGCACCAGTGCAGAGAAGTCAGGGGCTGTGAGAAGGGAAAATAGTGCATCAGG-AGGATCATGATCACATCTGCTCCCC--ACCGTCAAATAGGTAAGTCCTGACTTCCTCCACCCT-GCCTGTTC a score=38546.0 s hg17.chr17_random 602118 196 + 2618010 CTGGGGAACG-----------GCCAA---CACTGGCTTTTCACAACTGTGT-GTTA-CCAGAAATGCAACAGAAACCCAGCTGAATCCCCAGGGTTTCCC---TTCTGCCCTTCTCAATGGAAAGATCTGTCCCAGGACCATTTATTCCAACATTTTCAATTATGAGAAATCTGGGAAGATAAAGTT-ATTTTCACATTTCTCAAGAAATACATAC s panTro1.chr19_random 16339674 186 - 57627672 CTGGGGAATG-----------GCCAA---CACTGGCCTTTCACAACTGTGT-GTTA-CTAGAAATGCAACAGAAACCCAGCTGAATCCCC------TCC-----TCTGCCCTTCTCAAAGGAAAGATCTGTCCCAGGACCATTTGTTCCAACATTTTCAATTATGAGAA--CTGGGAAGATAAAGTT-ATTTTTACATTTATAAAGAAACACATAT s mm5.chr11 83336052 185 + 121648857 CTGGTGATTG-----------GCCAAGACCAATGG--TTCCCCAATCGTGTGGTTA-CTAAAAATGCAGCAGAAATCTAGCTGCATCCTTGTGATTTCC-----CCTGCCCTTCTCAAGGGAAAGATCTGTCTCAGAACCAT---------CATTTTCAAGTATAAGAACCTTTG---GATGTGGTTAACATTTGAATTTCTCAGTGAATACATAT s canFam1.chr9 23404485 202 - 53642819 CAGGAGAATGAGAAGTTTGGTGCTAT-----CTGAACTTTCACAGTTGTGTGGTCACCCAGAAATGTGGGAGAAATACAACTGAATGCTGAAGCCTCCCTGCGTTCTTGCCCTTTGGAGGTAATGGTTGGTCCTGAGGCCCTTCATCCCAACATTTTCAAGTATGAGAATCCTGA-------AAATT--TTTTCGTCTTTCTCAAGGAATATATAC a score=0.0 s hg17.chr17_random 602314 25 + 2618010 TTATTCATACTCATGACAggaaagt a score=3415.0 s hg17.chr17_random 602314 14 + 2618010 TTATTCATACTCAT s panTro1.chr19_random 16339860 14 - 57627672 TTATTCACACTCAT s mm5.chr11 83336237 14 + 121648857 TTATCCATACTCAT a score=832.0 s hg17.chr17_random 602328 11 + 2618010 GACAggaaagt s panTro1.chr19_random 16339874 11 - 57627672 TACAGGAAAGT a score=17694.0 s hg17.chr17_random 602339 227 + 2618010 cagaatctacagaaaaccaagaagatttttaaaaa-----tccatgataccaccatcaaaagagccacacttagtatgttggtccacaggtttcctagcacccttttctgttggt---gtatgcacaaaatacacaatcacattctgtctacattttacaatttgcc--attttttgatta-acac----tatatattgaccaatttttaagacctgcaacatatgtcgacaacattatttc s panTro1.chr19_random 16339885 227 - 57627672 CAGAATCTATACAAAACCAAGAGGATTTTTTAAAT-----CCCATAATACCACCATCAAAAGAGCCACACTTAGCATGTTGGTCCACAGGCTTCTTAGCACCCTCTTCTGTTGGT---GTATGCACAAAATGCACAATCACATTCTGTCTACATTTTATAATTTGCC-TGTTTGTTGATTA-ACAC----TATATATTGAACAATTTTTAAGACCTGCAACATATGTTGACAACA-TACTTC s canFam1.chr9 23404687 218 - 53642819 CAGAAAGTATAGAA---CAAATTGATGGCAAAAAAATGTGCCTATAATCTCATTACCAGGAAATAAATGTGT-GTGTGTGTGTATATGTGTATAT-------ATTTTCAAGGGGTATGGTACCCAAAGATCATGGCATCACACTCCAAAAACACTTTTAAGCTTTCTTTTTTTGTTGTTTCTACACTTAATACATAGTGAACAGTTTTT-------------CATGTCCATGGAAGTATTTC a score=2042.0 s hg17.chr17_random 602566 31 + 2618010 agaataatatatttataaataaacgcacaca s panTro1.chr19_random 16340112 31 - 57627672 CAAACAATGTATTTACAAATAAATGCACACA a score=6984.0 s hg17.chr17_random 602597 44 + 2618010 caaactgtctgtcttat--atacaacacgtcttactttctaattct s panTro1.chr19_random 16340143 44 - 57627672 CACACTATCTGTCTTAT--ATACAACGTGTCTTACTTTCTAATTCT s canFam1.chr9 23404928 46 - 53642819 CAAACTGTTTTCATTGTGAATATAGCACATTTTGCTTACTAATTCT a score=4556.0 s hg17.chr17_random 602641 69 + 2618010 ccactctggaagatttaggttttcctaacttt---ttaatatactcaccaggaatcagtaaactttttttat s panTro1.chr19_random 16340187 72 - 57627672 CCACTCTTGAAGATTTAGGTTTTTCCAACTTTTTCTTAATATATTCACcaggagtcagcaacttttttccat a score=30695.0 s hg17.chr17_random 602710 425 + 2618010 aaaaggccaaagggtagatattttaaactctgcaggccataggtttctgttgcaacactcaactctgctgttgcagggaaa-gaagccatacacaatttgtaaatgaatgggcatgactgtgttctgataaactttacaaaaacaggtggtggactagatgcagcctgctcctctggacatggcttaccagcccctgacatataccactacagaggatgctgttagaatgaaatctctttacacatctctgatcatctccttaggactaattgctagacatgacatcatggtagctgtgggtcaaagggcatgcacgctctgggatgtacattgccagattgcTCATGATCAGCCTTTCTCATGTCAAAATGTTTTGTGACCACCAGAAGGCTGGTTCTGCTTTTATTATCCATTGACTGAGGAGT s panTro1.chr19_random 16340582 380 - 57627672 aaaaggccaaagagtagatattttaaactctgcaggccataggtttctgttgcaacactcaactctgctgttgcagggaaaagaagccatacacaatttgtaaatgaatgggcatgactgtgttcT----------------------------------------------TCTGGACATGGTTTGCCAGCCCCTGACGTATAACACTACAGAGGATGCTGTTAGAATGaaatttctttacatatctctgatgatctccttaggactaattactagacatgacatcatggtagctgtgggtcaaagggcatgcatgctctgggatatgcattcccagattgcTCATCATGAGCCTTTCTCATGTCAAAATGTTTTGTGACCACCAGAAGGCTGGTTCTGCTTTTATTACCCATGGAATGAGGAAT a score=4122.0 s hg17.chr17_random 602835 46 + 2618010 gataaactttacaaaaacaggtggtggactagatgcagcctgctcc s panTro1.chr19 35039246 46 + 82489036 gataaactttacaaaaacaggtggtggactaaatgcagcctgcccc a score=119765.0 s hg17.chr17_random 603135 1625 + 2618010 AGAAATGACATGGCATGTATGCAGGATATTTAACCATCGTATAGATAATCCTTGTGCACAAGTGCATTCTATATTCTTTCCCAATAGGTCTACATCTGCCAGAGTTGAAATAAAATAAAACAAAACAAACCTATTTAGCACCTTCTGTGTAGCAGGTCCATTCATGTATGTTGTTGTATTTCATTCTCAGAATTCTTATGACCTAGGCattttaaaaatttttttaaaaatattgagttgacaaggattgtgtatatttaatgcatacaatgtgatgatttcatatatgtatatattgtgtactaattatcacaatcaaatttattacatccattaccacctatgctgtacattaaatctccagaatttgttcatcttataactgaaagtttacaccctttgattaatagcttcccattttccccacctccagcccttggcaaccaccattctactatctgtttttatgagtttgactctcttagatcccacatataagtgagatcatacaaaacttgtctttcggtgtctggcttatttcacttagcgtaatgtcctccaggtttatccaggacaggagtttcttcttttgaatggctaatagtccattgtttatatgtattttatttatccattcatctgttgctggacacttaggctgtttccatatcttgggtattgtgaatagtgttgtaataaacatggggcgcagatctctcttcaaggttctaa----------------------cct-------gattgctgaatcgtatggtagttctgcttctaattttttgaggaacctccatactgttttctgtaaaggttataccactttacattccaaccaacagtgtacaagggttctctttcctctatgctttcgccaacacttgttatctcttgtcgtttttttataagagccatcctatcctatgaggcaatatctcactgtggttttgatttgcatttctctgatgattagtggtgttgagcaccttttcatatgctggctggccatttgtatatcttccttgggg--aaaaaagtccattggggtcctttgcct--atttttaattgcgttattcatgtatttattaatttttgctattgaattgtgtgaattccttatattttttcaaataaccccttatcaaatatatgggtcgcaaatattttcttccatcccgtaggttgccttttcattttgtcatggtttcctttgctgtgtaaaacgttttaagattgatgtagtcccatttatttattttcacttttgttgcctgtgctttggtgttacatcaaaaaa--aatattgccaattatgaccaatgtcgaggaga-tttttccctatgtttacttccaggatttacatggtttcagatattacatttaaatctttaatccactttgagctaattttctgtatatgatgtaaaacaagtgtgcaatttcattctttttcatgcactttccccaacaccattcattgaagagagtttcctttctacattgtgcctttttTTTTTTTt---acagtacagtgaaagcaagtctattaagaaagtaaaggaataaaagaatctacattgtatatccttgatggccttgtcaaagatctgttgaccatatatgcacggggttatttctgggt s panTro1.chr19_random 16344490 1630 - 57627672 AGAAATGACATGGCATGTATGCAGGATATTTAGTCATCATATAGATAATCCTTGTGCACAAGTGTATTCTACATTCTTTCCCAATAAGTCTACATCTGCCAGAGTTGAAATAAAACAAAACAAAACAAACCTATTTAGCA--TTCTGTGTAGCAGGCCCATTCATATATGTTATTGTATTTAATTCTCAGAATTCTTATGACCTAGGCATTTAAA-------TTAAAAAAAATTtagttgacaaggattgtatatatttaatgcatacaacatgatgatttcatatatgtatatattgtgtactaattatca----caaatttattacatccattatcacctatgctgtacattaaatctccagcattttttcatcttacaactgaaagtttatagcctttgatttatagcttcccattttccccacccccagcccttggcaaccaccattctactatctgtttttatgcatttcactctcttagattccacatagaagtgagatcatacaaaacttgtctttctgtgtctggcttatttcactcagcataatatcctccaggtttatccatgacaggagtttcttctttttaatggctaatagtccatggtttatatacatattatttatccattcatctgttgatgggcacttaggatgtttccatatcttagctattgtgaataatgctgcaataaacatggggcacagatctctcttcaagattctaattccattctggggagtatatatcctgaagtgggattgctgaattgtatggtactttcacttctaattttttgaggcacttccatactgttttccataaaggttataccactttacattccaaccaacagtgtacaagggttctcttttctccacactttcaccaacacttcttatctcttctc--ttttttagaatagctgtcctatcctatgtggcaatatctcattgcgggttcgatttgcatttctttgatgattagtgacattgagcaccttttcatatgctggctggccatttgtatgtcttccttggggaaaaaaaagtccattcaggtccat--actaaatttttaa-tgggttatttatgtatttattaa-ttttgctatgtagttgtgtgaattccttatat------gattaaccccttatcaaatatatggattgcaaatattttcttccattccataggttgccttttcattttgtcattgtttcctttgctatgtaaaacgttttaagtttgatatagtcccatttatttatttttgcttttgttgcctgtgctttggtgttatggcaaaaaaatattattgccaa----gaccaatgtcaagaagattttttccctatgtttccttctaggagttatatggtttcagatattacatttaaatctttaatccattttgagctaattttttgtatatgatgtaaaacaagtgtgcaatttcattcttttgcaggaactttccccaacaccattcattgaagagagtttcctttctacattgtg----tattcttTTTTGTAaaagtagagtgaaaggaagcctattaagaaagtaaaggaataaaagaatctacattgtgtatccttgatgaccttgtcaaagattagttgaccatatatgcatggggttatttct-ggT a score=40329.0 s hg17.chr17_random 605083 509 + 2618010 gagcttggcatttttatctacctcattctaccgatgaggaggccgagtctcagagagttcacagacctgcctaaggtcactcagctagaggtgatacaaccagggtttgaactgagatctgccaagcttctgagtttattctttttcccccacaccaaggatcctcaattctgccttactgacatcaggatccggtcaattctttgtgatgggggctgtcc-tgcacctggcaggatgtttagcagcttctctggcctc-cacccactggatgccagGGGAATGCAGAA-GAGGCTTGTTc-attc-tcccatttaatcctcaggacaatatctgacataaa-tgttacgtcttttattttataaatgaagaaaatgagactcagaaaggtttaagtgagttacttaagaacacacagacagcaa-aggtagaactggaaaccgaacacaggtGTCCACATGGGACAACAAAAAA----GTTCACGTTCCATCTTCTTTTGAGTCTCTCATTTCAATAAT s panTro1.chr19_random 16346120 515 - 57627672 GAGCTTggtagttttatctccctcattttatcgatgaggaggccgagtctcagagagttcatagacctgcctaaggtcactcagctagaggtggtacaaccagggtttgaattgagatctgccaagcttccgagtttattctttttcccccacaccaaggatcctcaattctgccttactgacatcaggatccagtcaattctttgtgatgggggctgtccctgcacctggcaggatgtttagcagcttctctggcctctcacccactggatgcaagGGGAATGCAGAAAGAGGCTTGCTCCATTCGCcccatttaatcctcaggacaatatctgacataaggtgttatgtcttttatttcataaatgaagaaaatgagactcagaaaggtttaagtgagttacctaagaacacagagacagcaagaggtagaactaggaactgaacacaggtGTCCACATGGGACAACAAAAAATGCAGTT-----TCCAGCTTCTTTTGAGTCTCTCATTTCAACAGT a score=546.0 s hg17.chr17_random 605592 2 + 2618010 TA s panTro1.chr19_random 16346635 2 - 57627672 TA s canFam1.chr9 23412884 2 - 53642819 TA a score=56040.0 s hg17.chr17_random 605594 339 + 2618010 CCATTGTGTGGATATGAGCTGAAGTACAGGAAACCTGGGG-CTGAACTCTCCTCCCATCAGGCCTAGGAGCCCCAGACCAGAACCCCAGCCCAAGGTCTCCCAGTCAGGCCCGCTGGCGT-GAGCTGGCATCTACACTAGCATGGTCTCCCAAAGCTGCAGGGATGCCAG----TCTCGCCGCTGATGAAGAAAATGAAGGGCATTTGCTTCTCATGCAGGCTGTCGGGATTTAACACAGATTCCTTTTCTTGCTCTCTTCTCCCATAGCACAAAACTGGGT--GGTCCATCCCCCTCCCAGTGTCCC---AAGGCTTTGTT-GCGTGTTCTCTTTAATTT--------------CTCCCACTCT- s panTro1.chr19_random 16346637 337 - 57627672 CCATCATCTGGATATGAGCTGAAGTACAGGAAACCTGGG--CTGAACTCTCCTCCCATCAGGCCTAGGAGCCCCAGACCAGAACCCCAGCCCAAGGTCTCCCAGTCAGGCCCGCTGGAGG-GAGCTGGCATCCACACTGGC-CAGTTTCCCAAAGCTACAGGGATGCCAG----TCTCACTGCTGATGAACAAAAGGAAGGGCATTTGCTTCTCCTGCAGGCTGTCGGGATTTAACACAGATTCCTTTTCTTGCTCTCTTCTCTCGTAGCACAAAACAGGGT--GGTCCATCCCCCTCCCGGTGTCCC---AAGGCTTTGTT-GCATGTTCTCTTTAATTT--------------CTCCCACTCT- s mm5.chr11 83337615 315 + 121648857 CCATCATTTAGCCATGAGCATTAACTCAGAAAACCTGGG--------CCTCATCCCCCTAGACACAGGAGCCTCATAGCTAGGCCATGGC---GGGTGGGTGTGGCAGGACCACGTGTGT-GCACT--------------C-TGGTTTCCCAACACCATGAGGATGCCAGTGTCTCTCTCTACTGATAGACACAGTG-------CTCACTTCTCCTGCATGCTATCAGAA--TAATAC---TTCCTGTGCTTGCTCTCTGATGCTGGAACATAAAA-ACATT--GACCTACTCTGCACCC-----CCA---AAAGACTGGTTGGCAGCTCCTCTTTAATTTGGCTCTCCCTCCTGTTCCCATTCT- s canFam1.chr9 23412886 324 - 53642819 CCATCCTGTAGACAGGAACCCGGA-GCAGGCAGTCTAGGGCCTGAACTCCCCTCCTGTCAGGCCT----------------GATCCTGGCCTGAGGCCTTACAGCCAGGCTCACTGAAGCAAAGCTTGCCCCCACATTAGCCTGGTTTCCCAAAGCCAC--GGATACCGG----TGTCTCAGCTGGTGGACAGAGTCAAGGATGTTGCCTCCCCCTACAGGTGGCCGGGGTTTGGCGCAGCTTCCCTTTCTCATGTTTTTCTACTGGAGCACAAAGCAGAGTTGGCCCCACTCCGAATCC-----CCTTGGAAGGCTTTGGTTGCATATTCTCTTTAGTTT--------------GTCTTGCTCTT a score=60505.0 s hg17.chr17_random 605933 412 + 2618010 TGCGGTGTACCCTACCCTC-------ATCTCCCTGGCAACCTTTCTGCTGTATCCTCTCGACACCTGGATCACAAGAACACTTGTGAGACCCCTTAACAAGTTAC-ATCCCAAATTATCATTCCCC--TTTGTCCTCAGCCAGTG-CTCAGGTCCAAC--TTGCTCTCCTGGGGTGACTTTCTTTCCTGCCCAATATGGTTTCATCAT----------CTGT-AAATTGG-----------------------------------------------------------------------GGATAATTAAAGTCTTGATCCTG--ATATTTGACTCTCAAAGCAGAAGTAGCAAGCTCAGCCAAGTCACTTCAACAAGAGGAGA--AGTTCCTTGTGAACCAAAAGGGCAC---TG-GTCACAAGGGCCGCTCCTTCTTCTGT----CAGGCCTCT------------------CCAGCACGCCCTTGGCT---CAGCCAAAGAAGAGACTCAGGCTGTGCTTCTG-CACTGTTGGGATA s panTro1.chr19_random 16346974 407 - 57627672 CGCAGTGCACCCTACCCTC-------GTCTCCCTGGCAACCTTTCTGCTCTATCCTCTCCACACCTGGATCACAAGAACACTTGGGAGGCCCCTTAACAAGCTAC-ATCCCAAATTATCATTCCCC--TTTGTCCTCAGCCAGTG-CCCAGGTCCAAC--TCGCTCTCCTGCGGTGACTTTCTTTCCTGCCCAATATGGTTTCATCAT----------CTGT-AAATTGG-----------------------------------------------------------------------GGATAATTGAAGTCTTGATCCTG--ATATTGGGCTCTCAAAGCAGAAGTAGCAAG-------AAGTCACTTAAACAAGAGGAGACGAATTCCTTGTGAACCAAAAGGGCAC---TG-GTCAGAAGGGCCGTTCCTTCTTCTCT----CAGGCCTCT------------------CCAGCACACCCTTGGCT---CAGCCAAAGAAGAGACTCAGGCTGTGCTTCTG-TGCCGTCGGGATA s mm5.chr11 83338431 478 + 121648857 TGTGGCAGAAACCACACCCCTATACAATTACTTTAGTACCTTTCCCCCTCCCTTCTCTGAACAGATGCACCACAACCATAGCTGT--------TCTATAAACTACAATCCCCAATTGTCACTCTCT--GCTGTCCACGGGAAATGTTTCAGGT-------------------------TTTCTCTCCTGCCCCACGTAGTTTCTTCATATCATTCATGCTATCAAATTGATGCAAAGTCCTTATCTTTTTCTTTTCTCTGTTTTTTTTTCTTTTTGGTAGGGCCTCCATAACTATCTGATTGGATAATGAAAGGCTTAAACTTG--ATAGTTGATTCTCTAAGTATAAGTAACAGAAGCAGACAAAT-ATTAAAGCGAGGGAAGC--CATTTCTT------CAAGAGGACACATGTGTGTCACAAGGACCACTCCTTGCTCCCTGCCCCTTGTCTCTGTTTCTCAAATACATTACCTAGCACCCACT----------GCC-AAGAAGAGACTCCG-----GCATTTC-TACTATTGCAACA s canFam1.chr9 23413210 400 - 53642819 TGATGGGCACCCTATTCCC-------ATCTCCCTGGCCACCTTTCTGCACAATTCTCTACATAG-TGCATCAGAACATT--TTGAGAAGTCCTTTGGCAAGCTGC-ACCCCA------CGGCCCCCAGTTTACCCTCAACCAGTGCCCCAGACCAAACCTTTGGTCCCTCTGAATGATTTTCTTTCTTGTTCAATATGATTTCTTAAT----------CTGT-GAGCTAT-----------------------------------------------------------------------TAATAATTAAGGTCTTGATCCTGATATATATGACTCT-AAAGCACAAGTTGCAAACTCGGCCAAGCCACTTAGATGGGAGGAGA--TACTGCTT-TGAACCTAAAGGATGC---TG-GTTACAATGGCCACT---------------CAGGCCCCT------------------CAAGCATGCCATTGGCCTCGCTGCCAGAGAAGGGACT-AGGCTGTGCTTCTGCTGTGGCCAGGATG a score=3706.0 s hg17.chr17_random 606345 7 + 2618010 ACATAGG s panTro1.chr19_random 16347381 7 - 57627672 ACATAGG s mm5.chr11 83338909 7 + 121648857 ACATAAG s rn3.chr10 65074780 7 + 110733352 ACTCAGG s canFam1.chr9 23413610 7 - 53642819 ACGGAGG a score=973.0 s hg17.chr17_random 606352 5 + 2618010 --CCTCT s panTro1.chr19 35042440 5 + 82489036 --CCTCT s mm5.chr11 78561380 5 + 121648857 --CCTCC s rn3.chr10 65074787 5 + 110733352 --CCTCC s canFam1.chr9 23413617 5 - 53642819 GATCT-- a score=12180.0 s hg17.chr17_random 606357 68 + 2618010 TCCATGTGGTTCCACACCAGGAACATGGGGACA-ATCAGACCTC----TCCCAGTGTGGGCATAAGGATA-CAA s panTro1.chr19 35042445 68 + 82489036 TCCATGTGGTTCCACACCAGGAACATGGGGACA-ATCAGACCTC----TCCCAGTGTGGGCATAAGGATA-CAA s mm5.chr11 78561385 63 + 121648857 TCTATGAGCTTTTCTATCAGG---ATAGGGAAACCCCAGACATC----CCTTGCTATGTGGGAAGGGATA---- s rn3.chr10 65074792 67 + 110733352 TCCATGAGCTTTTCTATGAGG---ATAGGGAAGCCCCAGACCTC----CCTCACTCAGTGAGAAGGGATAACCA s canFam1.chr9 18859856 66 - 53642819 TCCACATGACtccacacctggagaatgggagta-atcaaatctcagagctcaggcatgcgggtaaaa------- a score=1157.0 s hg17.chr17_random 606425 15 + 2618010 GATCATGTCAATAT----T s panTro1.chr19 35042513 15 + 82489036 GATCATGTCAATAT----T s mm5.chr11 78561448 10 + 121648857 ---------AATATAAGAT s rn3.chr10 65074859 15 + 110733352 TATGATGACAACTT----T a score=1603.0 s hg17.chr17_random 606440 12 + 2618010 GACATTCATAAT s panTro1.chr19 35042528 12 + 82489036 GACATTCATAAT s mm5.chr11 78561458 12 + 121648857 GACAGCTTTACT a score=27565.0 s hg17.chr17_random 606452 305 + 2618010 ggctgggtgcagtggcacacgcctgtaatgccagcactttgggaggctgaggtgggcagattgcttgaaccccagagttcgaaaccagcctgggcgacttggcaaaaccagtctctactg-aaaatacaaacaattggctgggcttggtggcgcacacctgtagtctcagctacttgggaggctgaggtgggaggattgctcaaacccagggaggttgaggcttcagtgagctatgatggcactgctgtactccaacctgggcaacagagtgaggccctgtctcaaaacaaaaacaaagacaaaaC s panTro1.chr19 35042540 306 + 82489036 GCctgggcgcagtggcacaggcctgtaatcccagcactttgggaggctgaggtgggcagattgcttgaaccccagagttcgaaaccagcctgggcgacttggcaaaaccagtctctactgaaaaatacaaaaaattggctgggcttggtggcgcacacctgtagtctcagctacttgggaggctgaggtgggaggattgctcaaacccagggaggttgaggcttcagtgagctatgatggcactgctgtactccaacctgggcaacagagtgaggccctgtgtcaaaacaaaaacaaagacaaaaC a score=-31.0 s hg17.chr17_random 606756 1 + 2618010 C s canFam1.chr9 18859935 1 - 53642819 T a score=936.0 s hg17.chr17_random 606757 3 + 2618010 AAC s panTro1.chr19 35042846 3 + 82489036 AAC s rn3.chr10 65074874 2 + 110733352 -AC s canFam1.chr9 18859936 3 - 53642819 AAT a score=21171.0 s hg17.chr17_random 606760 36 + 2618010 ATTCATAATAGTAGCAATAGCTACTATGTGCCAAGC s panTro1.chr19 35042849 36 + 82489036 ATTCATAATAGTAGCAATAGCTACTATGTGCCAAGC s mm5.chr11 78561470 36 + 121648857 ATCCAGGAAAATATCACTAACCACTGTGTGCCAAGC s rn3.chr10 65074877 36 + 110733352 ATCCATTACAGTATCCATAACCACTGTGTGCCAAGC s canFam1.chr9 18859939 36 - 53642819 ATCCATACTAATAGCAGTAACAACTGTGTGCTAAGT a score=1878.0 s hg17.chr17_random 606796 5 + 2618010 CCAGG s panTro1.chr19 35042885 5 + 82489036 CCAGG s mm5.chr11 78561506 5 + 121648857 CTAGG s canFam1.chr9 18859975 5 - 53642819 CCAGC a score=1449.0 s hg17.chr17_random 606801 7 + 2618010 CACGTCT s panTro1.chr19 35042890 7 + 82489036 CACCTCT s canFam1.chr9 18859980 7 - 53642819 CACTTCT a score=7264.0 s hg17.chr17_random 606808 27 + 2618010 TGGGGTTTTCGTTG----------------TCCATGCGTTCAG s panTro1.chr19 35018502 27 - 82489036 TGGGGGTCTCCTTG----------------ACCATGCACTCAG s mm5.chr11 43087000 27 - 121648857 TGGTGGATTCTTTG----------------ACTACTGGTTCAG s rn3.chr10 45658089 27 - 110733352 TGGTGGATTCTTTG----------------ACTATTGGTTCAG s canFam1.chr9 18859987 40 - 53642819 ---TTGAGTCCTTGCAGCAGCTCTATCAGATCCATGTGCTCAG a score=75390.0 s hg17.chr17_random 606835 160 + 2618010 GGCTCAGA---CCCCAACACAACC-----AAGCG------CCCGTGTGCTGAAGAGAAGCAGGTCCGTTAGGTGAGGTCCAAAGGCTGTGGCTCTTGCATGAGCCTGAAGTGGTGCACGTCCCTGGTCACATTGGAGGTGGAGAGCTTGGGGATCTGAATGTGCTGTTTGCCTT s panTro1.chr19 35018529 159 - 82489036 GGCTCAGA---CCCCAACACAAAC-----AAGC-------CCCGTGTGCTGAAGAGAAGCAGGTCCCTTAGCTGAGGTCCAAAGGCTGTGGGTCCTGCATGAGCCTGAAGTGGTGCACGTCCCTGGTCACATTGGAGGTGGAGAGCTTGGGGATCTGAATGTGCTGTTTGCCTT s mm5.chr11 43087027 167 - 121648857 GGCTCAGATAGCCTCAGCTCAAGCAGGGAAGGC-------CCAGTAGGGTGCAGAGGGGCTCTTACCTCTGTTGAGGTCTAAAGGCTCCGGGCTCTGGATGAGCCTATATTGCTGTGGCTCCCATGTTGCATTGGAAGTGAAGCGTTTCGGGATCTGAATGTGATGTTTGCTTC s rn3.chr10 45658116 165 - 110733352 AGCTCAAATAGCCCCAACTCCCGC-AGGAAAGA-------GCTGTAGGGTG-GGAGGGGCTGGTACCTTTGTTGAGGTCTAGAGGCTCTGGGCTCTGGGTGAGCTTGTACTGCTCTGGCTCCCATGTTGCGTTGGAAGTGTAGCGTTTCGGGATCTGAATGCAATGTTTGCTTC s canFam1.chr9 34782473 173 + 53642819 GGGTCAGAGA-CCTCCACCCCAGCAGGAAGGGCAACCAGTCTCGTGTGGTGCGGCAAAGCAGGTACCTTTGTTGAGGTCCAGAGGCTGCGAGTCCTGCACGAGCCTGTATTGGTGTGGGTCCCAGGTCACATTGGAAGTGTAGAGCCTGGGGATCTGAATGCAGTGTTTGCCTC a score=1898.0 s hg17.chr17_random 606995 3 + 2618010 GGA s panTro1.chr19 35018688 3 - 82489036 GGA s mm5.chr11 43087194 3 - 121648857 GGA s rn3.chr10 45658281 3 - 110733352 GAA s canFam1.chr9 18861123 3 - 53642819 GGG a score=5695.0 s hg17.chr17_random 606998 30 + 2618010 TCTTTATTTGTGATTCAGAAACAGTGGAAT s panTro1.chr19 35018691 30 - 82489036 TCTTTATTTGTGATTCAGAAACAGTGGAAT s canFam1.chr9 18861126 24 - 53642819 TCTTTATTTGTGATTCAGAAACAC------ a score=15829.0 s hg17.chr17_random 607028 85 + 2618010 AAAAGGAAAGGAAAGAAAACCGGAATGGCCACCTCAGCAGGATGCTC----CAAGGGTAGTGTCCAGGTGGCACTGACTCAGATATGTG s panTro1.chr19 35018721 85 - 82489036 AAAAGGAAAGGAAAGAAAACCCGAATGGCCACCTCAGCAGGATGCTC----CAAGGGTAGTGTCCAGGTGGCACTGACTCAGACACGTG s rn3.chr10 65076074 86 + 110733352 ATGGGGAAAGGAAACAAATCTAGCA-GGCCCTGTC-TCAGGACACCAAGGGCAAAGGTAGCATGCAGG-GATGCTCAGCCCAGCATATG s canFam1.chr9 18861150 82 - 53642819 ---AGCAGGGAAAAAGAAAACCCCACTACTGTCACAGAGGGACACCC----CCAGGGTAGTGTCCAGGTAAAACTGACTCAGACACATG a score=77020.0 s hg17.chr17_random 607113 176 + 2618010 GGGGCTTCCCCCACCCATGCTCAAGAGCCACTTTGCCATTTCACCATCTCTCTGTCCTCCACACCCCTCAGCAGCAAGCACAACAAGAATGTGTTCACCATGAAGCTCAAATCTCAGCAGAATCT--AGAGTCTGAAATCCAAGTAAGGGAAAGTGTAGAGCTTCTTGGATGATGCCC s panTro1.chr19 35018806 176 - 82489036 GGGGCTTCCCCCACCCATGCTCAAGAGCCACTTTGCCATTTCACCATCTCTCTGTCCTCCACACCCCTCAGCAGCAAGCACACCAAGAATGTGTTCACCATGAAGCTCAAATCTCAGCAGAATCT--AGAGTCTGAAATCCAAGTAAGGGAAAGTGTAGAGCTTCTCGGATGATGCCC s mm5.chr11 78562113 168 + 121648857 GGGGCTTTCCGCAGCACAGCACAGGAGAT-CTGTACCATT------TCTGTCTGTCTTTC-CAGCCCTCAGCAGCATCCATGCAAAGAACGTGTTTACCATGAGGCTGAAATCCCAGCAGAATCTGCAGAGTGAAAAGTCCAGGTAAGG--ATGGGCAGGGATGCTTAGCTGGTACCC s rn3.chr10 65076160 153 + 110733352 -GGGTTTCCCCCAGCACAGCATAGGGGCT-CTG-ACCATC------TCTGTCTGTCTCCT-CAGCTCTCAGCAGCATCCACGCCAAGAACGTGTTCACCATGAGGCTGAAATCCCTCCAGAATCTGCAGAGTGAGAAGTCCAGGTAAGG--ATG-------------GGCTGGTACAC s canFam1.chr9 18861232 176 - 53642819 GAAGCTACCCCCACCAGCACTTAAGAGCCACTTTTTCACTTCATCATC--TCTGTCTCCCACAGCCCTCAGCAGAATGCATGCCAAGAACGTGTTCACCCTGAGGCTCAAATCACAACGGAATCTACAGAGTCCAAAATCCAGGTAGGGGAGACTACCGGGCTGCTTGGGTGATGTTC a score=10107.0 s hg17.chr17_random 607289 61 + 2618010 TGTCAATTTTATTTT----------AACGAATGAA-AGACCAGAAGAAGTCAGTC--TGAAAGGAGAG---GACAGG s panTro1.chr19 35018982 64 - 82489036 TGTCAATTTTATTTT----------AACGAATGAACAGACCAGAAGAAGTCAGTCTTTGAAAGGAGAG---GACAGG s rn3.chr10 65076313 64 + 110733352 ----AGGATTGCTCTGG--------AATGCACAAA-GAACCAGAGACAGTCAGTCTGTAGGCGGGGAGGGAGACAGG s canFam1.chr9 18861408 70 - 53642819 TGCCGGTTTAATTTAAGACAAAACAAAACAAAAAA-AGACCAGAGCCAGTCAGTGTTTGAAAGGAGAG------AGG a score=7565.0 s hg17.chr17_random 607350 66 + 2618010 AGCATCTGC-TGGC-ATTAGCAGCCGTGCCATC-GTAGGACCGACTCACC-GG----ACCCGCGGCCACCTGTG s panTro1.chr19 35019046 68 - 82489036 AGCATCTGC-TGGCGATTAGCAGCCATGCCATC-GTAGGACCGGCTCACCTGG----ACCCGTGGCCACCTGTG s canFam1.chr9 18861478 69 - 53642819 ----TGTACACAGC-ATTAGCGATGATGCCATCTGTAGGACCAGCTTGGCTGGTAACCCCTGTGACCTCCAGTG a score=56044.0 s hg17.chr17_random 607516 363 + 2618010 GATGAGGGTAGGGTACACCAC-AAGAGTGGGAGAAATTAAAGAGAACACGCAA-CAAAGCCTT---GGGACACTGGGAGGGGGATGGACCACCCAGTTTTGTGCTATGGGAGAAGAGAGCAAGAAAAGGAATCTGTGTTAAATCCCGACAGCCTGCATGAGAAGCAAATGCCCTTCATTTTCTTCATCAGCGGCGAGACTGGCATCCCTGCAGCTTTGGGAGACCATGCTAGTGTAGATGCCAGC-TCACGCCAGCGGGCCTGACTGGGAGACCTTGGGCTGGGGTTCTGGTCTGGGGCTCCTAGGCCTGATGGGAGGAGAGTTCA-GCCCCAGGTTTCCTGTACTTCAGCTCATATCCACACAATGGTA s panTro1.chr19 47446994 362 - 82489036 GATGAGGGTAGGGTACACCGC-AAGAGTGGGAGAAATTAAAGAGAACACGCAA-CAAAGCCTT---GGGACACTGGGAGGGGGATGGACCACCCTGTTTTGTGCTATGGGAGAAGAGAGCAAGAAAAGGAATCTGTGTTAAATCCCGCGAGCCTGCAGGAGAAGCAAATGCCCTTCATTTTCTTCATCGGTGGCGAGACTGGCATCCCTGCAGCTTTGGGAAACCATGCTAGTGTAGATGCCAGC-TCACGCCAGCGGGCCTGACTGGGAGACCTTGGGCTGGGGTTCTGGTCTGGGGCTCCTAGGCCTGATGGGA-GAGAGTTCA-GCCCCAGGTTTCCTGTACTTCAGCTCATATCCACACAATGGTA s canFam1.chr9 30229587 348 + 53642819 GATGGGAATAGGGTGCCCATCAAAGAGCAAGACAAACTAAAGAGAATATGCAACCAAAGCCTTCCAAGGGGATTCGGAGTGG---GGCCAACTCTGCTTTGTGCTCCAGTAGAAAAACATGAGAAAGGGAAGCTGCGCCAAACCCCGGCCACCTGTAGGGGGAGGCAACATCCTTGACTCTGTCCACCAGCTGAGACACCGGTATCCGTG--GCTTTGGGAAACCAGGCTAATGTGGGGGCAAGCTTTGCTTCAGTGAGCCTGGCTGTAAGGCCTCAGGCCAGGAT----------------CAGGCCTGACAGGAGGGGAGTTCAGGCCCTAGACTGCCTGCTCCG-GGTTCCTGTCTACAGGATGGTA a score=45781.0 s hg17.chr17_random 607879 510 + 2618010 ATTATTGAAATGAGAGACTCAAAAGAAGATGGAACGTGAACTTTTTTGTTGTCCCATGTGGACacctgtgttcggtttccagttctacctcttgctgtctgtgtgttcttaagtaactcacttaaacctttctgagtctcattttcttcatttataaaataaaagacgtaacatttatgtcagatattgtcctgaggattaaatgggagaatgAACAAGCCTCTTCTGCATTCCTctggcatccagtgggtggaggccagagaagctgctaaacatcctg-ccaggtgcaggacagcccccatcacaaagaattgaccggatcctgatgtcagtaaggcagaattgaggatcct-tggt-gtgggggaaaaagaataaactcagaagcttggcagatctcagttcaaaccctggttgtatcacctctagctgagtgaccttaggcaggtctgtgaactctctgagactcggcctcctcatcggtagaatgaggtagataaaaatgccaagctc s panTro1.chr19 47447356 513 - 82489036 ATTACTGAAATGAGAGACTCAAAAGAAGATGGAACGTGAACTTTTTTGTTGTCCCATGTGGACacctgtgttcggtttccagttctaccacttgctgtctgtgtgttcttaagtaactcacttaaacctttctgagtctcattttattcatttataaaataaaagacataacatttatgtcagatattgtcctgaggattaaatgggagaatgAACAAGCCTCTTCTGCATTCCCctggcatccaggcggtggaggccagagaagctgctaaacatcctgcccaggtgcaggacagcccccatcacaaagaattgactggatcctgatgtcagtaaggcagaattgaggatccTCTGgtggtgggggaaaaagaataaactcagaagcttggcagatctcagttcaaaccctggttgtatcacctctagctgagtgaccttaggcaggtctgtgaactctctgagactcggcctcctcatcggtagaatgaggtagataaaaatgccaagctc a score=3527.0 s hg17.chr17_random 609321 59 + 2618010 TTCATTTTTATATAATTTCGATGACACCATAATCCTATTCTTTTGGACAGCAGTTAAGC s canFam1.chr2 73511015 59 - 87725193 TTAATTTTTAAATATTGTTGATGGCACTATAATCCAATTCTTTTGGAAAGCAATTTAGC a score=117.0 s hg17.chr17_random 609380 14 + 2618010 AATAAGAA-------------------TCAAGA s canFam1.chr2 73511258 33 - 87725193 aAAAAGAAAGCAATTTAGCAACATGATTCAAGA a score=10645.0 s hg17.chr17_random 609394 52 + 2618010 AAAAAAATCTGATTTAATTGCTTCACTTTTAGAGAGCCAAAGCAAATAATAT s panTro1.chr19 36506587 52 + 82489036 aaaaaaatCTGATTTAATTGCTTCACTTTTAGAGAGCCAAAGCAAATAATAT s canFam1.chr2 73511291 50 - 87725193 --AAAATACTAATTCAATTACTTCATTTCTAGAGAGCCAAAGGAAATATGAT a score=21702.0 s hg17.chr17_random 609446 123 + 2618010 AAGATATAGCATGTATAAATTAC--------CTTTGTGTCTTTTA--------------------TATCATTTATATACTTTATCTTCAAGACATG--AAAATGTATGCACAAAGATATTTTATATAACCATTTATAACCATACAACTTTTAT s panTro1.chr19 36506639 123 + 82489036 AAGATATAGCATGTATAAATTAC--------CTTTGTGTCTTTTA--------------------TATCATTTATATACTTTATCTTCAAGACATG--AAAATATATGCACAAAGATATTTTATATGACCATTTATAACCATAAAACTTTTAT s canFam1.chr2 73511541 153 - 87725193 AAGAAATAGCACTTATTAAGTACTATTTCATTTTTATATCATTTATGTACCTTATTTTTTGTGTGTATCACTTATGTACTTTAATTTCAAGACATGAAAAAATATATATGCAAAGATACTTTATATAGCTGTTTATAATTATAAAAATTGTAT a score=50922.0 s hg17.chr17_random 609569 628 + 2618010 AAAAGTCTggccggctgcagtggctctcacttgtaatcccagcactttgggaggccgaggcaggtggatcacttgaggttaggtgttcaagaccagcctaggcaacatggtgaaacccatctctacttaaaaatacaaaaaattagctggacatggtggcgtgagactatagtccagctattagggaggctgaggtcggaggatcacttcagcccagggggtcgaggctacagtgagctgaggtcacaccacagaactccagcctgggtgacagagtaagatctcatctcaaaaaaaaaaaaaaaaaaaaaaGATCTggccaggagtagtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacaaggtcaggagatcgag--accatcctgaccaacatggtgaaaccccatctctactaaaaatacaaaaaagtagc------cggatgtggtggcacaagcctgtagtcccagctactcgggaggctgaggcaggaggatggcgtgaacccgggaggcggag-gttgcagtgagccgagatcgcaccactgcactccagcctgggtgacagcgggagactccgtctcaaaaaaaaaataataataaaataaaaattC s panTro1.chr19 36506762 618 + 82489036 AAAAGTCTggccggctgcagtggctctcacttgtaatcccagcactttgggaggccgaggcaggtggatcacttgaggttaggtgttcaagaccagcctaggcaacatagtgaaacccatctctacttaaaaatacaaaaaattagctggacatggtggcgcgagactatagtccagctattagggaggctgaggtcggaggatcacttcagcccagggggtcgaggctacagtgagctgaggtcacaccacagaactccagcctgggtgacagagtaagatctcatctc--aaaaaaaaaaaaaaaaaaaaGATCTggccgggcgtagtggctcacgcctgtaatcccagcactttgggaggccgatacaggcggatcacgaggtcaggagat--agccatcatcctggctaacacggtgaaactccgtctctactaaaaatacaaaaaattagccaggcacggaggcg--ggc----gcctgtagtcccagctactcgggaggctgaggcaggaggatggcgtgaaccggggaggcggagcgttgcagtgagccgagatcgcaccactgcactccagcctgggcgacagcgggagactctgtctcaaaaaaaa---------aaaaaaaaaaTTC a score=20383.0 s hg17.chr17_random 610208 321 + 2618010 AAAGAAAATACACAAAATACgctgggcacagtggctcacgcttgtaattctagcactttgggaagccaaggcaggcagatcatgaggtcgggaattcgagaccagcctcaccaacatagtgaaaccccatctctactaaaaatacaaaaaaaaataagccgggcttggtgt---gcgcctgtaatcccagctactggggaggctgaggcaggataatcgcgtgaagccaggaggcggaggtttcagtgagccaagatggcgccattgcattccagcccaggccacactgcaagactccgtctcaaaaaaaaaaaaaaaaagaaC s panTro1.chr8 116204467 321 - 138322177 aaagaaaaTACACAAAATAggacgggtgcggaggctcacgcctgtaatcccagcaccttgggaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatacaaaaaaagtta-gccaggcgtggtggcgggcgcctgtagtccccactactcaggaggctgaggcaggagaatggcgtgaacccgggagacggaggttgcagtgagccaagatcatgccactgcactccagcctgggtgacagagcaagactccatctcgaaaaaaaaaaaaaaaaTA-- a score=13207.0 s hg17.chr17_random 610529 85 + 2618010 CACAAAATATATTAATAGGACTGTGGTAAGGATGGTAAGATTATGAGTGATTTCTTTCCTCTATTGCAAACTATACCATTTCCTT s panTro1.chr8 116204788 85 - 138322177 CACAAAATATATTAATAGGACTGTGATAAGGATGGTAAGATTATGAGTGATTTCTTTCCTCTATTCCAAATTATACCATTTCCGT s canFam1.chr2 73512199 77 - 87725193 CACAATACATATTAACAGGCTGATGATGAAGATAGTAAGAT----AATGAATTTATTTCTTTATTCCAAAATAC----TTTCTTT a score=743.0 s hg17.chr17_random 610614 13 + 2618010 TATGATGTGAAGT s panTro1.chr8 116204873 13 - 138322177 TATATTGTAAAGT a score=528.0 s hg17.chr17_random 610930 14 + 2618010 TATAATGTGAAATT s canFam1.chr2 73512276 14 - 87725193 TATATTTTAAACTT a score=7180.0 s hg17.chr17_random 610944 51 + 2618010 TTATAGAAAAATGTCGCTAAATGCTAATCAAGTCTGCCCACCAAAGATAAA s panTro1.chr8 116204887 51 - 138322177 TTATGGAAAAATGTCACTAAATGCTAACTAAATCTGCCCACTGAAGATAAA s canFam1.chr2 73512290 47 - 87725193 TTGTAGAGATACATTACTATATGC----CATGTCTCCTTACTAAAGACAAA a score=38747.0 s hg17.chr17_random 610995 498 + 2618010 CCTAT----AATAAAACAGGGTGTCTCAGCAACAACAACAACaaaaaaaaaaaaaaaaaaagaaaccataagccaagcatggtagcaccaatctgcagtcccaaatactcagaagggtgaggcaggagaatcacttgtgcctgggagtttgaggctgcagtaatataatcgcaccactgcactccagcctgggcaaaagagcaagactcggtctcaaattaaaaaa----------------------aaaaaaaGATAGAATTttttaaatactaaaaatacaacatgtgaagtgaaaatttcactcggcaagcttcacaacaacaaatctgagatgacaaaagagtcagtgaacttgaagctacatcgatagatagaatctaatgtgaggccaggcgcggtggctcacacctgtaatcccagcactttgggaggccgagatgggtggatcacctgaggtcaggagtttgagaccagcctgaccaacatggagaaatcccatctctactaaaaaatacaaaat s panTro1.chr8 116204938 508 - 138322177 CCTATAATAAATAAAACAGGATGTCTCAGCAACAACAAT----------------AAAAAAGAAACTATAagccgagcgtggtagcaccagtctgcagtcccaaatactcagaaggctgaggcaggaggatcacttgtgcctgggagtttgaggctgcagtaatataatagcaatactgcactccagcctgggcaaaagagcaagacttgatctcaaattaaaaaaaaaaacaaagaaaaaacaaaaCaaaaaaacaaagaattttttaaatactaaaaatacaacatgtgaagtaaaaatttcactaggcaagcttcataacaacaaatctgagaagacaaaagagtcagtgaacttgaagctacatcaatagatagaatctaatctgaggccaggcatggtggctcacacctgtaatcccagcactttgggaggccgaggtgggtgggtcacctgagctcaggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaaatacaaaaT a score=17759.0 s hg17.chr17_random 611931 232 + 2618010 tcttgaagcaccaaaagaaaatgtcacattacacagaggg-------aaccatgactggataaacggcagatttctcatcataaaatatggaagccaaaagaaaataaactaaaatacccctt-----gctaaaagataaggcactgtcaacacagaattctatatccaaccacaatgcccttcaaaaatagaggtgaaatagatactttcagataaaagaaagcaagcacaatttatcaccaa s panTro1.chr8 116206161 241 - 138322177 tcttgaagcaccaaaagaaaatgtcacattacacagagggcagagggaacagtgactggataaatgggagatttctcatcataaaatatggaagccaaaagaaagtaaactaaaatac---ttaaattgctaagagataaagcaccgtcaacacagaattctaaatccaaccacaatgcccttcaaaaataaagatgaaataggtactttcagataaaagaaagaaaacacaatttatcaccaa a score=701034.0 s hg17.chr17_random 612163 7798 + 2618010 aagatacgccctgcaagaaaggctaaagaaattcttcaggattaagagaaatgatgctagaaaatgcaaatcttcagaagacaaagaagactaccacaaatggtaaatatctgggtaaacttagatgacttttagctcttaagttcttaacattacatgattattgaaagccaaaattacattgttgttttctggggcttataatgtacatagttccaacacacatgacaatagcataactgacaacaaacagaggtgatataaaagaacaacttacaagctttgtatactttacaacttgtacaatattaGTCAGAAGTGGTAATACTATAAAAACAGACTGAAAAGAGTAAAGAAATATATTTAAATTGCTAGAGAAatgtgccaaagaattaagttgaaacccttcctgatattaaaaaattaattcaaaagtgaatcgcagacctaaatgtaagagctaaaacaataaaactttagaaaaaaacataggaggtaagtctttaggacttggttgaacaacagtttttagacataacactagataaaagtagaggcaacaaaagaaaaaataactagaatttaccaaacctacagacttttttgctacaaacaaaatcatcaggaaagtaaaaggatggaagaaatatttacaagtcatatgtctgataagtagtttgtatccagaatacagagctcttccactcagaaataaaaagctatacagcccagttaaaaattgaacaaaggggccgggcacggtggctcacacctgtaatcccagcactttgggaggc------------------------caggagtttgagactagcctggccatcatggtgaaactccgtctctgctaaaaatacaaaaattggccaggcgtggtggcgggcacctgtaatcccaggtactcaggaggctgaggcaggagaagcgcttgaacccgggaggcagaggttgcagtgagccaagatatcacaccactgcactccagcctgaacaacagagtgagactctgtctacaaaagaatataatgaaaaaaGATAAGTAAaaatcaacaccacaatgagatactacctcatgccctgtaggatagctaaaatcaaaagccaaacaataaaaaatgttggcaaagagatggagaaattaaaaccttcatatattgttgctggtaatttaaaatgttacagcctctttgtcagtttttcaaaaggttaaacagagttgcagcatgaaacaaaaatcctaggcccaagagaattgaaaacaaatgtctggatttgcagacaaatgttcataataataacattattcataatattgcaaaagtatatacaacctaaatgtttatcaattaatgaatgagtaaagaaaatgtactatagccatgcaatagaatattatttgacaacaaaaaggaatgaagttctaataaatgctacaaaacaaatgcttgtacatgatgctaggagaaagaagccactcacaatacaccaaatgattccatttatatgaaatgtgacaaatagggatggagacagaatgaagattagtgattgccaggagctgggcaagtagggtaatggagagtgactgttaatgggccaaagggcttctttttgaggggatccaagtgttctaaaattgattgtagtgacgTAGAGACTCTC---AAAAAAAAATAGTGTATTAGCACACatagaaaagtaaaactc-aatcacaaggtgtctgtaagaaacacactttaagggaagacacaaacaggtccaaagtaaatggatAggctgggtgcgcggtggctcatgcctgtaatcctagcactttgggaggccgaggcgggcacttgatcacttgaggccacgggtttgagaccagcctggccaacatggcaaagccctgtctctactaaaaatgcaaaaattagccaggcatggtgccacacacctataatcccagctactaggatggctgaaacaggcgaactgcttgaacctgggaggcaaatgctgcagtgagccgagatcacaccactgcactccagcctgggtgatagattaaaactccatctcaaaacaaacaaacaaacaaacaacaacaacaaaaaGATGGTGAGTGGCTACAtagtaaagagagggagggacatttcacagtaagtcagacaatgaagaagtcataataattataaatgtatgcacctaaaaacaaggcttcaaaatacatgaaggaaaatttggcataaggcataaacagtcagaatactcagtgccccaaacatggtaagatattttagcatccctctttgtgattgacaaaaccagaccaaataataatagtcatcatcatcatctagcaatgttaaaaccactataaacattcttttcaggtaaacttggtgcattccccatgaaagaccacatactgagccacaaagctggacacaatagaatgaaaataatgggaatcatacagattatgttccctaaccacattagaaaaaaagatatgaaattaatgacctagcagccgggtgcggtggctcacggctgtaatcccagcattttggaaggccaaggcaggcggatcacctgaggtcgcgagctcaagaccagcctggctaacatggtgaaaccccttctctattaaaaatacaaaaattagctgggcgtggtagcggatggctgcaatccgagctactcaggaggctgagctgaggcaggagaatcgcttgaacctgggatgcggaggttgcagtaagccaagattgcattactgcactttagcctgggtggcagcgcaaaactctgtcataaaataaaatgaaatgaaatgaaatgaaatgaaatgaaataatgaaatgaaatgaaatgaaatgaaatgaaatgaaataaaataaaataaaataaaataaaataataaaataaaataaaataaaatatgtagggttctacctaaagaacctatatataaaagggtaaagtaaacccaaagtaagtag--aaaaaaaaaaaagaaatagtaaaaataagagcagaagaaatgaaacagaaaagtaacagaaaatttgaagtcaaagctggtccttttgtcagagacctctgaaccagagtgcttctatcttgaacaggtgctgggtcaaataaggctgagtcctgctgggctgcattcccagtaagtcatgcattctaagtcacagaatgagataggaggctggcacaagatacaagacagaaaaaccttgctgataaaacaggttgtaataaagaagggggccaaaacccaccaaagccaagatggtgataaaactgacctctggtcatcctcactgctcattatacactaattataatacattaacatgctaagagacactcccacaagcgccatgagtttacaaatgccatagcaatgccagcaagttaccctatatagtctaaaaaggggaggaaccactagttctgggaatagcccacccctttcccagaaaactcatgaagaatccaccccttgtttagcatacaatcaagaaatactcataaaaatgggaaaccagtggcccatggcactgctctgcctatggactagccattcttttattcttttactttcttaataaacttgctttcacttgatgaatccgccccaaattctttcttgcatgacatccaagaacctctccttggggtctggattgggaccccttctggtaacacgttggaaagacctacaaagttgacagtctgcaagcgaaattaatttatttttaaagaggaagaatacaaattaccaagaataaaaggggaattagctctacgatcccaaaggtattgagggccaaagattattattaatgacttcatgctaactaattcaacagctgagatgaaaagaagaaattctttgaaaacaaaacttatcaaaactgataaaacagaatatctgagaagcattttaagttgaattatcaaaatcctttccaaaaagaaaactctagactcagattttttcactgataagttccttcaaacactaaagaaaaaatagcatcaatctcacacaaacatttccagaaaacagagaagacaatgcttcccaaatcattttctaagttgagcatgaagaataccaatgcatatgccaaaaataccagcacctgacaaaaagcagcaaggttacaccaaaatccctcacatacaaagatgcgcaaatatttactattagcaatttaaatccaacaatatattaagaggaATAggccagttgcgatggctcacacagattacgaaagtaatcctggcacttttggaggccaaggcgggaggatcacttgaggtcaggagacctgcctggccaacatggtgaaaccttgtctccacgaaaaaaattagctgctcatggtggcacgtgcctgtaatcccagctactccggaggctgaggcaggagaatcacttgaacccaggaggcggaggttatagtgagcagagattgtgccactgtacCCATCTCC--AAAAAaataataataataataatacaccatgacaccaaatggcatttagtataacatttgaaaataaaacaatgaaatttacattaatatatttaaatatatagcattatctcaatagatacagaaaaagcttctgagaaaactcaatatccattcaggacataaaccctcaggaagctagggctagaCCTTACTCAActgtgtattctccatggcatggcatgattattcctcttagggtctgtgactataactatcttttcaatggcagttatgttgggttctgttgtccttgtcatatctaaacagtaataaaacctatatttgaaaacaATCtgataaagttcatcaataaaacccctacagctgacttataattagtggtgtaacactgaatgctgtattcaaagaatgaaaacaagattaagtcaattctgtgagggaagagaataaaaggcattacaactagggaaaaaaagagataaaactgtgttttatgacaatcatctattagaaaaatctaagaaatgtacctaaaaaaactcgtagaattaatatgacttaaggttgtaagaaacgggtcaatatacaaaaattctatttccaacaaaaaattagaaatttttataatacttcataattgctgaaaaa-gtatttaatattttaaaatacaaatagcatcaacaaaagacaaaatacttaaaaataaaaataattttaggccaggcgtggtggctcatgcctgtaatcccagcagtttgggaggccgaagcaggcagatcatttgagatcaggagttgaccagcctggccaacggggtgaaaccccatctctactaaaaatataaaaattagttgggcttagggtacatgccagtaatcccagctgcttgggaggctgaggcaggagaattgtttgaacccaggagatggagtgagccaagactgggccactgcactccagctaggcgacagagtgagactctgtctcaacaaaaaggaaaaaaaataagtaattttaaaaacagaagacatgcgagaccaaaggctaaaagcaacaaacgactgctcagacaaaacaaaaaagacctaaataaatggagagatatactatactaatgactaagactcagtggttgttaagatgtcagttctcctcaaactgatcaacagattcaagacaattacaatcatgatcccatcagccttttttggagaagacagaaaagagatgattaaaatttatacggaaatgtgaaggacgtagagtatgcagaacttcgaaaaagaagaaaaaggttttaggacttgcaattctgacttcaagacaatataaagttaccaaagaatccgaatactctaacagggctagacaaacagatttttgaagcagaataaagatttctgaaagagatcccacttaggcagccacgcgatgttcccaaagcaacccggtgagaaaaggagactcttttcaacaaatggtgacaaacaactggatagccacatgcaaaaaactcagacctacaaaaataacttcagacgcatcacagacctaaatataaattagcaaaagcaagcccttttacaggaaacaaaggaaattaccttcaagactttgaggttaggcaaaagtgtcttagctcacagtaagcaataactacaaaagaaaacactgataaattaaacctagcagatataaatatttctgctcatcaaaaggtacagttaaaataaa----taggccgggcgcggtggctcacgcctataatcccagcactttgggaggccgaggcggacggatcacgaggtcaggaggtcgagaccacggtgaaaccccgtctctactaaaaacacaaaaagttagccgggcgtagtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcgccactgcactccagcctgggtgacagagcgagactccgcctcaaaaataaataaataaat----aaataaataaataaataaataaatgggtaaaccacatagacttggggaaagtatttacaaaacatttgtctaacaaaggatgagtatttaggacatataaacaccttctgcaactcaaatagatgaaaaacgaaaacaaagaacagtaaaggcaaaatgaacaaactcatcacaaaagagaacacacaaatggccaacacacaagctaaaacgtgctcaatatcaccagttatcatgaaaatgtaaattcaaaccacagtgataccacttctggtcaagatggagtgaataaaggggaccagatttagcctccttgcgtgaaataataaaaacctaataaaatgaatgaaacaacagcactgaagatattggacaagtaacaaaagacagtgatccctggaagacaaaaaacaaacgggccacacgtgtgcccagcttactgccttgagagagttttccaggtcgtggaacagggaggaggaacccaggcagagcctgtcgtctccccaagttgaggaaatggagctggaagtccaaggaggccaaggtgcctagagctcacaagggagaccagcactgagtagagagctggagagagagagagaaatgaagagatctacaagggctcaccctagaacttttggttgaatgacaaatcagcacttgcaatgtaaaggagctgtccaagggcaaggtgagaaatcaccaaaacaattagacgtaatagcatccaggactgacttaaggaggtgtatagtacccacacccaaaagtccaaaaggaaatgacgtgatataatttatatcacattggagatgtgacattggaatactaagaaagaaaaggcttcagaaggaggaaaaatttaaccctaaacacaaccctggtccaatcaaggaaaacataaaagacccaacagaaagaaactgttttcaagcaacttaataatgccacagaacaaagtccacaaatatttttaaaaggcaaacaaaactagggaaactagaaaacaaggtaaaattcacactggctcaaaagtcaatccaaatttataagacttacatagaagcaggaaattataccccataatgaaacaaaaaacaaaccaattttgaaatgaaacagaaaatagaattggtagacaagtcctttaaaacaattatgatgatatttcatatgatgagaaggctagaagaaacaacatattaagtaaaaatatgaattatttttaaaatttgaacttctaaagatgaaaattacaaagtctaagatgaaaaatacac s panTro1.chr19 36509444 7730 + 82489036 AAGATACGCCctgcaagaaaggctaaagaaattcttcaggattaagagaaatgatgccagaaaatgcaaatcttcagaagacaaagaagactaccacaaatggtaaatatctgggtaaacttagatgacttttagctcttaagttcttaacattacatgattattgaaagccaaaattacattgttgttttctggggcttataatgtacatagttccaacacacatgacaatagcataactgacaacaaacagaggtgatataaaagaacaacttacaagctttgtatactttacaacttgtacaatattaGTCAGAAGTGGTAATACTATAAAAACAGACTGAAAAGAGTAAAGAAATATATTTAAATTGCTAGAGAAatgtgccaaagaattaagttgaaacccttcctgatattaaaaaattaattcaaaagtgaatcgcagacccaaacgtaagagctaaaacaataaaactttagaaaaaaacataggaggtaagtctttaggacttggttgaacaacagtttttagacataacactagataaaagtagaggcaacaaaagaaaaaataactagaatttaccaaacctacagacttttttgctacaaacaaaatcatcaggaaagtaaaaggatggaagaaatatttacaagtcatatgtctgataagtagtttgtatccagaatacagagctcttccactcaaaaataaaaagctatacagcccagttaaaaattgaacaaaggggccgggcatggtggctcacacctgtaatcccagcactttgggaggcctaggcagggggatcacctgaggtcaggagtttgagactagcctggccatcatggtgaaactccgtctctgctaaaaatacaaaaattggccaggcgtggtggcgggcacctgtaatcctaggtactcaggaggctgaggcaggagaagcgctcgaacccgggaggcagaggttgcagtgagccaagatatcacaccactgcactccagcctgaacaacagagtgagactctgtctacaaaagaatataatgaaaaaaGATAAGTAAaaatcaacaccacaatgagatactacctcatgccctgtaggatagctaaaatcaaaagccaaacaataaaaaatgttggcaaagagatggagaaattaaaaccttcatatattgttgctggtaatttaaaatgttacagcctctttgtcagtttttcaaaaggttaaacagagttgcagcatgaaacaaaaatcctaggcccaagagaattgaaaacaattgtctggatttgcagacaactgttcataataataacattattcataatattgcaaaagtatatacaacctaaatgtttatcaattaatgaatgagtaaagaaaatgtagtatagccatgcaatagaatattatttgacaacaaaaaggaatgaagttctaataaatgctacaaaacaaatgcttgtacatgatgctaggagaaagaagccactcacaatacaccaaatgactccatttatatgaaatgtgacaaatagggatagagacagaatgaagattagtgattgccaggagctggggaagtagggtaatggagagtgactattaatgggccaaagggcttctttttgaggggatccaagtgttctaaaattgattgtagtgacgTAGAGACTGTCTCAAAAAAAAAATAGTGTATTAGCACAgatagaaaagtaaaactcaaatcacaaggtgtctgtaagaaacacactttaagggaagacacaaacaggtccaaagtaaatggatAggctgggtgcgcggtggctcatgcctgtaatcctagcactttgggaggccgaggcgagcacttgatcacttgaggccaggggtttgagaccagcctggccaacatggcaaagccctgtctctactaaaaatgcaaaaattagccaggcatggtggcacacacctataatcccagctactagggtggctgaaacaggcgaactgcttgaacctgggaggcaaatgctgcagtgagccgagatcacaccactgcactccatcctaggtgatagattaaaactccatctcaaaacaaaCAaacaa--caacaacaacaacaaAAAGATGGTGAGTGGCTACAtagtaaagagagggagggacatttcacagtaagtcagacaatgaagaagtcataataattataaatgtatgcacctaaaaacaaggcttcaaaatacatgaaggaaaatttggcataaggcataaacagtcagaatactcagtgccccaaacatggtaagatattttagcatccctctttgtgattgacaaaaccagaccaaataataataGTCATCATCATCATCTAGCAATGTTAAAACCACTataaacattcttttcaggtaaacttggtgcattagccatgaaagaccacatactgagccacaaagctggacacaatagaatgaaaataatgggaatcatacagattatgttccctaaccacattagaaaaaaagatataaaattaatgacctagcagccgggtgcggtggctcacggctgtaatcccagcactttggaaggccaaggcaggcggatcacctgaggtcgcgagctcaagaccagcctggctaacatggtgaaaccccttctctattaaaaatacaaaaattagctgggcgtggtagtggatggctgcaatccgagctactcaggaggctaagctgaggcaggagaatcgcttgaacctgggatgcggaggttgcagtaagccaagattgcattactgcactttagcctgggtggcagcgcaaaactctgtctcaaaataaa--------------------------------------------------------------------ataaaataaaataa---------------------------------aatatgtagggttctacctaaagaacctatatataaaagggtaaagtaaacccaaagtaagtagaaaaaaaaaaaaaagaaatagtaaaaataagagcagaagaaatgaaacagaaaagtaacagaaaatttgaagtcaaagctggtccttttgtcagagacctctgaaccagagtgcttctatcttgaacaggggctgggtcaaataaggctgagtcctgctgggctgcattcccagtaagtcatgcattctaagtcacagaatgagataggaggctggcacaagatacaagacagaaaaaccttgctgataaaacaggttgtaataaagaagggggccaaaacccaccaaagccaagatggtgataaaactgacctctggtcatcctcactgctcattatacactaattataatacattaacatgctaagagacactcccacaagcgccatgagtttacaaatgccatagcaatgccaggaagttaccctatatagtctaaaaaggggaggaaccactagttctgggaatagcccacccctttcccagaaaactcatgaagaatccaccccttgtttagcatacaatcaagaaatactcataaaaatgggaaaccagtggcccatggcactgctctgcctatggagtagccattcttttattcctttactttcttaataaacttgctttcacttgatgaatccgccccaaattctttcttgcatgacatccaagaacctctccttggggtctggattgggaccccttctggtaacacgttggaaagacctacaaagttgacagtctgcaagcgaaattaacttatttttaaataggaagaatacaaattaccaagaataaaaggggaattagctctacgatcccaaaggtattgagggccaaagattattattaatgactttatgctaactaattcaacagctgagatgaaaagaagaaattctttgaaaacaaaacttatcaaaactgataaaaaagaatatctgagaagcattttaagttgaattatcaaaatccttccccaaaagaaaactctagattcagattttttcactgataagttccttcaaacactaaagaaaaaatagcatcaatctcacacaaacatttccagaaaacagagaagacgatgcttcccaaatcattttctaagtttagcatgaagaataccaatgcatatgccaaaaataccagcacctgacaaaaagcagcaaggttacaccaaaatccctcacatacaaagatgcgcaaatatttactattagcaatttaaatccaacaatatattaagaggaataggccagttgcgatggctcacacagattacgaaagtaatcctggcacttttggaggccaaggcgggaggatcacttgaggtcaggagacctgcctggccaacatggtgaaaccttgtctccacgaaaaaaatcagctgctcatggtggcacgtgcctgtaatcccagctactccggaggctgaggcaggagaatcacttgaacccaggaggcggaggttatagtgagcagagattgtgccactgtacccatctccaaaaaaaaaaaataataataataatacaccatgacaccaaatggcatttagtataacatttgaaaataaaacaatgaaatttacattaatatctttaaatatatagcattatctcaatagatacagaaaaagcttttgagaaaactcaatattcattcaggacataaaccctcaggaagctagggctagaccttactcaactgtgtattctccatggcatggcatgactattcctcttagggtctgtgactataactatcttttcaatggcagtcatgttgggttctgttgtccttgtcatatctaaatagtaataaaacctatatttgaaaacaatctgataaagttcatcaataaaacccctacagctgacttataattagtggtgtaacactgaatgctgtattcaaagaatgaaaacaagattaagtcaattctgtgagggaagagaataaaaggcattacgactaggg-aaaaaagagataaaactgtgttttatgacaatcatctattagaaaaatctaagaaatgtacctaaaaaaactcgtagaattaatatgacttaaggttgtaagaaacgggtcaatatacaaaaattctatttccaacaaaaaattagaaatttttataatacttcataattgctgaaaaatgtatctaatattttaaaatacaaatagcatcaaaaaaagacaaaatacttaaaaataaaaataattttaggccaggcgtgatggctcatgcctgtaatcccagcagtttgggaggccgaagcaggcagatcatttgagatcaggagttgaccagcctggccaacagggtgaaaccccatctctactaaaaatataaaaattagttgggcttagggtacatgccagtaaacccagctgcttgggaggctgaggcaggagaattgtttgaacccaggagatggagtgagcccagactgtgccactgcactccagttaggtgacagagtgagactctgtctcaacaaaaaggaaaaaaaataagtaattttaaaaacagaagacatgcgagaccaaaggctaaaagcaacaaacgactgctcagacaaaacaaaaaagacctaaataaatggagagatatactatactaatgactaagactcagtggttgttaagatgtcagttctcctcaaactgatcaacagattcaagacaattacaatcatgatcccatcagccttttttggagaagacag-aaagagacgattaaaatttatatggaaatgtgaaggacgtagagtatgcagaacttcaaaaaagaagaaaaaggttttaggacttgcaattctgacttcaagacaatataaagttaccaaataatccgaatactctaacagggctagacaaacagatttttggagcagaataaagatttctgaaagagatcccacttatgcagccacgcgatgttcccaaagcaacccggtgagaaaaggagactcttttcaacaaatggtgacaaacaactggatagccacatgcaaaaaactcagacctacaaaaataacttcagacgcatcacagacctaaatataaattagcaaaagcaaacccttttagaggaaacaaaggaaattaccttcaagactttgaagttaggcaaaagtgtcttagctcacagtaagcaataactacaaaagaaaacactgataaattaaacctagcagatataaatatttctgctcatcaaaaggtacagttaaaataaataggtaggcagggcgcggtggctcacgcctgtaatcgcagcactttgggaggtcgaggcggacggatcacgaggtcaggagatcgagaccacggtgaaaccccgtctctactaaaaatacaaaaagttagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggtggagcttgcagtgagccgagatcgcgccactgcactccagcctgggtgacagagcaagactccgtctcaaaaataaataaataaataaacaaacaaacaaataaataaataaatgggtaaaccacatagacttggggaaagtatttacaaaacatttatctaacaaaggatgagtatttaggacatataaacaccttctgcaactcaaatagatgaaaaacgaaaacaaagaacagtaaaggcaaaatgaacaaactcatcacaaaagagaacacacaaatggccaacacacaagctaaaacgtgctcaatatcaccagttatcatgaaaatgtaaattcaaaccacagtgataccacttctggtcaagatggagtgaataaaggggaccagatttagcctccttgcgtcaaataataaaaacctaataaaatgaatgaaacaacagcactgaagatattggacaagtaacaaaagacagtgatccctggaagacaaaaaacaaacgggccacacgtgtgcccagcttactgccttgagagag-tttccaggtcgtggaacagggaggaggaacccaggcagagcctgtcgtctccccaagttgaggaaatggagctggaagtccaaggaggccaaggtgcctagagctcacaagggagaccagcactgagtagagagctggagagagacagagaaatgaagagatctacaaaggctcaccctagaacttttggttgaatgacaaatcagcacttgcaatgtaaaggagctgtccaagggcaaggtgagaaatcaccaaaacaattagacgtaatagcatccagaactgacttaaggatgtgtatagtacccacacccaaaagtccaaaaggaaatgacgtgatataatttatatcacattggagatgtgacattggaatactaagaaagaaaaggcttcagaaggaggaaaaatttaaccctaaacacaaccctggtccaatcaaggaaaacataaaagacccaacagaaagaaactgttttcaagcaacttaataatgccacagaacaaagtccacaaatatttttaaaaggcaaacaaaactagagaaactagaaaacaaggtaaaattcacactggctcaaaagtcaatccgaatttataagacttacatagaagcaggaaattataccccataatgaaacaaaaaacaaaccaattttgaaatgaaacagaaaatagaattggtagacaagtcctttaaaacaattatgatgatatttcatatgatcagaaggctagaagaaacaacatattaagtaaaaatatga---atttttaaaatttgaacttctaaagatgaaaattacaaagtctaagatgaaaaatacac a score=106408.0 s hg17.chr17_random 627398 1208 + 2618010 tcccagctactcaggaagctgaggcaggagaattgctccaatccaggaggcggaggttgccgtgagccaggatcgcgccattgcactccagcctgggcagcaagagtgaaactccatctcagaaaaaaaaaaaaaaaaaaa-----aaaaaacaaGTATATATAAGTCAGCAATGaagaaaatgcaggacttgtacacagaaaaatcataaaactttactgaagtaaactgaagacaacatatataaatggaaagacatttcatgttcttggattgcaacaccttaatgttgctaagatgttactactccaaagcaatctacacattcaataaaatccctgtcaaaatcccaagaatgttttttgcagaaa-ttaaaaaaaaatacattctaaaactcatgtagaatctcaagggacctcaaatagtcaaaacaatcttgaaaaagaataaatttgaagacatcacacttcgtgatttcaaaacttactacaaagctacagtaatcaaaacagtgttgccaggcttggtggctcatgcctgtaatcccagcactttgggaggccgaggcggacggatcacctgaggtcgggagtttgagaccagcctaatcaacataaagaaaccccgtgtctactaaaaatacaaaaattagccaggtgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagctgagatcaggccactatactccagcctgggcaacaagaatgaaactccacctcaaaaaaacaaaaacaaaaacaaaacacagtgttgtactggcataaaaacagagcactgaaagagaatagagagttcaaaaataaactctcgcttatatggtgaagtgattttcaacaaaagtgccaggatcattcagtgggaaagagactcttttcaacaaataattttgggaaaactgcattatctacatgcaaaagaatgtaggtggacacttctcttacaccgcacacaaaaattgactcaaaatggatcaaagacctaaacataagaGCTACATCTGGTggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcccggctaaaa--cggtgaaaccccgtctctactaaaaatacaaaaaa s panTro1.chr19 45740613 1212 - 82489036 tcccagctactcaggaagctgaggcaggagatttgctccaatccaggaggcggaggttgccgtgagccaagatcgcgccattgcactccagcctgggcaacaagagtgaaactccatctcagaaaaaaaaaaaaaaaaaaaccaaaaaaaaaCAAGTATATATAAGTCAGCAATGaagaaaatgcaggacttgtacacagaaaaatcataaaactttactgaagtaaactgaagacaacataaataaatggaaagacatttcatgttcttggattgcaacaccttaatgttgctaagatgttactactccaaagcaatctacacgttcaataaaatccctgtcaaaatcccaagaatgttttttgcagaaatttaaaaaaaaatacattctaaaactcatgtagaatctcaagagacctcaaatagtcaaaacaatcttgaaaaagaataaatttgaagacatcacacttcgtgatttcaaaacttactacaaagctacagtaatcaaaacagtgttgccaggcttggtggctcatgcctgtaatcccagcactttgggaggccgaggcggacggatcacctgaggtcgggagtttgagaccagcctaaccaacataaagaaaccccgtctctactacaaatacaaaaattagccgggcgtggcggcacatgcctgtaatcccagctactcaggaggctgacgcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcaggccactacactccagcctgggcaacaagagtgaaactccacctcaaaaaaacaaaaacaaaaacaaaacacagtgttgtactggcataaaaacagagcactgaaagagaatagagagttcaaaaataaactctcgcttatatggtgaagtgattttcaacaaaagtgccaggatcattcagtgggaaagagactcttttcaacaaataatgttgggaaaactgcattatctacatgcaaaagaatgtaggtggacacttctcttacaccgcacacaaaaattgactcaaaatggatcaaagacctaaacataagaGCTACATCTG--ggccgggcatggtgactcacacctgtaatcccagcgtgttgggaggtcgaggcaggtggatcatgaggtcaggaaatcaaaaccatcctggc--aaacccggtaaaaccccgtctctactaaaactactaaaaa a score=19121.0 s hg17.chr17_random 629092 248 + 2618010 aaaaataaaAATGTCAACAAATTTGCTCAACTATAACAGAAAAAGAAAGCTTACAAGAGAATGTAGAGCTCATAGTTTCTACTTAGTGTTTGTTAGATAAATGGTTTAAATGGACTGAAAATCCTGAAAAACTGCTTGAATCATAAAGAATCTTTGAAATATTATGGAAGCATTTTCTAGCTTGTTTCTGAAACCTCTGAAAAAAACCTCCTCATGTATCAATACAAGCTAACCTGCTTTACAGAAAT s panTro1.chr19 56076421 246 - 82489036 AAAAATAAAAATGTCAACAAATGTGCTCAACTATAACGGAAAAAGAAAGCTTACAAGAGAATGTAGAGCTCAGAGTTACTACTTACTGTTCATTAGATAAATGGTTTAAATGGTTT--AAATCCTGAAAAACTGCTTGAATCTTAAATAATCTATGAAATATTATGGAAGCATTTTCTAACTTGTTTCTGAAACCTCTGGAAAAAAACTCCTCATGTATTAATACAAGCTAAACTTCTTTAGAGAAAT a score=27199.0 s hg17.chr17_random 629340 307 + 2618010 CAGAAGAAAACCATggctgggcacggtggctcacgtctataatgccagcactttgggaggtcgaggtgggcggatcacgaggtcaggagttcgaggccagcctggccaacatggtgaaacccctgctctactaaaaatacaaaaattagccaggcatgctggcaggcgcctgtaatcccagctccttgagaggctaaggcaggaaaatagcttgaacctcggaggcagagattgcagtgagccgagatcgcaccactgcactccagcctgggacccagcgagattctgtctcaaaaaaaaaaaa-----------gaa s panTro1.chr19_random 16537708 316 + 57627672 CAGAAGAAAACCACggctgggcacggtggctcacgtctataatgccagcactttgggaggttgaggtgggcggatcacgaggtcaggagttcgaggccagcctggccaacatggtgaaacccccgctctactaaaaatacaaaaattagccaggcatgctggcaggcgcctgtaatcccagctccttgagaggctaaggcaggaaaatagcttgaacctcggaggtagagattgcagtgagccgagatcgcgccactgcactccagcctgggacccagagaga--ctgtctcaaaaaaaaaaaaaaaagaaaaaagaa a score=16428.0 s hg17.chr17_random 629647 200 + 2618010 aaaaagaaaaCTATGTATTTTATTACATGTACACATTTGTCTTTCATATACTTGTAACTCAGAAAACCATGCTTTCACAAATGTAATAATAGAAATACAATAATATTAGCAATCATAACATTTGTGAAAGTGTAAAGAATAAACTGGCCAGATGCTGTCTCTTACACCCTAGAACCCAGGTTCTGGTCAAGGCTTGTCTT s panTro1.chr19 56076667 200 - 82489036 AAAAAGAAAACTATACATTTCATGACATGTATACATTTTTCTTTCACATACTTGTAACTCAGAAAACCATGCTTTCACAAATATAATAATAGAAATACAATAATATTAGCAATCATAACATCCATGAAACTGTAAAGAATAAACTGGCCAGATGCTGTCTCTTACACCTGAGAACCCAGGTTCTGGTCAAGGCTTCTCTT a score=12606.0 s hg17.chr17_random 629847 84 + 2618010 GGTTGTATGAACTCACTTCATGGACC-----TGTCATAAGGCTCAAAAGAGATACTGTAAACAAAAGCATCTTGTAAACTGCATAAGCC s panTro1.chr19 56076867 84 - 82489036 GGTTGTATGAACTCACCTCGGGGACC-----TGTCATAAGGCTCAAAAGAGATACTGTAAACAAAAGCATCCTGTAAACTGTAAAAGCC s rn3.chr10 43288442 87 - 110733352 GGTTGTCGGAGCCCATCTCACGGACTTTTCATGTCATAAAGCTCACATGAGATGATCCAAGCAAAAG-GGCTTGCAGA-TGCACAGGCC a score=5041.0 s hg17.chr17_random 629931 45 + 2618010 TGTAGATTTGTGGTCCATCTAAATCCAGGCACTTTAACG------ACTGAT s panTro1.chr19 45743251 45 - 82489036 TGTAGATTTGTGGTCCATCTAAATCCAGGCACTTTAACG------ACTGAT s rn3.chr10 43288529 49 - 110733352 TATAGGAATGT--TTGCTTCAGATCAAGGCTCTCTGATGTTTTTTACTGCT a score=573.0 s hg17.chr17_random 629976 2 + 2618010 Ag s panTro1.chr19 45743296 2 - 82489036 AG s rn3.chr10 43288697 2 - 110733352 AG a score=34307.0 s hg17.chr17_random 629978 188 + 2618010 ctgtccccccagaa-------------cctcctttctcgattcttaacataaacaacttatacttcc--aagtccagttcaaaagttatattcttg--gaagcctccgc-gtccctcctgtccatccaggcagaactaATCCATCTACACTC----TAGTATTATGCTCTCATAACTCTTGGCTCTTCCCCAGttcattcaagagtgtaa s panTro1.chr19 45743298 188 - 82489036 CTGTCCCCCCAGAA-------------CCTCCTTTCTCGATTCTTAACATAAACAACTTATATTTCC--AAGTCCAGTTCAAAAGTTATATTCTTG--GAAGCCTCCGC-GTCCCTCCTGTCCATCCAGGCAGAACTAATCCATCTACACTC----TAGTATTATGCTCTCATAACTCTTGGCTCTTCCCCAGTTCATTCGAGAGTGTAA s rn3.chr10 43288699 181 - 110733352 CAGTCCTCTGAAGAGCAGCTCTGTCTCCAACCCCTCTTAACCCTTAACATACACCATTGACACATCCCAGAGTCTAGCCCAAAAGCTGTATCCTCA-TGAAGCTTCTCCAGATGCACCTGTGAATACAGGCAAAACTAATTC-TTTAC------------ATTATGCCCTCACA---------------TCAATTCATTTGGTAATGTAG s canFam1.chr9 16531560 190 - 53642819 ctcttgccttggaa-------------tccctttaccttattctcaacataaattgcttatatctta--aagtccagctcaaaagtcacatcctttgtgaagcctttcc--cattatgtatacacccaggcagaactaattattcttttttTTAAATAATATTATGCTTTCATTATTTT--GTTTTTTATCAATTCATTCATGAATAAA- a score=6619.0 s hg17.chr17_random 630166 33 + 2618010 cgagcagttaaaatatgtcagacatcatgctat s panTro1.chr19 45743486 33 - 82489036 CGAGCAGTTAAAATATGTCAGACATCATGCTAT s canFam1.chr9 16531750 33 - 53642819 CAAGCATTTAGGATATATTAGACACTGTACTAT a score=94023.0 s hg17.chr17_random 630199 434 + 2618010 gcactggagaAAAAA--TCTTAAATGTGTGAAGCTTACAAAGCTTTTTCACACACAT--TATCTCATTTCATACTTTAAAA----ATATCCCATAgga--tcatgattatgtgtttacaatttctctaaccagaataaattcccagggggtagagactaagtgtgattcatctttgattccccagagtctaatgcagtgtctggcacccagaaggcacccattaagcacttgataaatgaatgagtAAAGGAGTAACAAACACTTGTTCGATTACTAAAATG-TCAATCAGGGTTAACACTGAAATAATCTTTCC-------ACAAAGTTTCCACAGGGG-AGAGGGGAAAAATACATTATATTATATACAAACACATCTGGGGAGCGAAAATTCC---TCCCTATAGCAGAGC---ATCTCCAACTCAAGTTTAACTGTTTAACAAAGCCACATAGCA s panTro1.chr19 45743519 436 - 82489036 GCACTGGAGAAAAAA--TCTTAAATGTGTGAAGCTTACAAAGCTTTTTCACACACAT--TATCTCATTTCATACTTTAAAA----ATATCCCATAgga--tcatgattatgtgtttacaatttctctaaccagaataaattcccagggggtagagactaagtgtgattcatctttgattccccagagtctaatgcagtgtctggcacccagaaggcacccattaagcacttgataaatgaatgagtAAAGGAGTAACAGACACTTGTTCGATTACTAAAATGATCAATCAGGGTTAACACTGAAATAATCTTTCC-------ACAAAGTTTCCACAGGGGTAGAGGGGAAAAATACATTATATTATATACAAACACATCTGGGGAGCGAAAATTCC---TCCCTATAGCAGAGC---ATCTCCAACTCAAGTTTAACTGTTTAACAAAGCCACGTAGCA s rn3.chr10 43289176 394 - 110733352 GCACTACAGAGACAG-----------------------AAAAGGTTTTCACCTAAAT----TCTCAGTTAAGACTTGAAAACACGCTCTCTCAGAGGG----AGGGATTCTTGTTTACTGCTCCTCTAGGCAGCATGGGTCCC--AGGGGTAGAA--TGACTTTCATGCATCTTTGATTCCCCAGGGTCT-----AGTACCTAGCACACAGGAGATACTCATTAAATGCTTAATAAATAAACAAATAAAGGAGTAACAGATATTTCTAGCACTAATAAAGTA-ACAATCAGGATTAGCATTGAATTATTCCTTACAAACTTTACAAGTTTTCCACAGAAG-----------------------TATACATACACACATTTTTATAATCATAATTTTATAATCCTACATTATGGCGCTACCTCCATTTGGAGTCT-TTTCTTTAAGAAAGTCATGTGCCA s canFam1.chr9 16531783 402 - 53642819 GCAGTGGAAGAAAAATATCTTAAATTTGTAAAGCTTACAAAGTTTTTTTTTGGAAATGGTGTCTCATTTAATACTTTAAGA--ATATATCTTATAAGATATCATAATTA--tgtttattatttctccaactagaatgaattcccaaggagtggaggctgagtctaattcatctttgactccctagagcctagtatagtacctagcacacaggagacactcatttaatacttgttaaataaatgagtAACA-------AGACACTTGTTAGATTAATACAGTA-GCAATCATAGTTAACGGGG--------------------GCAG-------ACAGAGG--------ATATATATGTCACATTGT--GCAAACATATCTGGGAAGATA-AATTCC---TCACTACAGCAGAAT---ATCTCCAACTCTGTTTT-ACTGTATAACAAAGCCATGTACTG a score=10868.0 s hg17.chr17_random 630633 26 + 2618010 ACTGAGGATGGATTTGATTTTACTAC s panTro1.chr19 45743955 26 - 82489036 ACTGAAGATGGATTTGATTTTACTAC s rn3.chr10 43289713 26 - 110733352 ACTGAAGACAGATTTGATTTCACTGC s canFam1.chr9 16532185 26 - 53642819 ACTGAAGATAGATTTGATTTCCATAT a score=0.0 s hg17.chr17_random 630659 11 + 2618010 TGGACTAACAA a score=434.0 s hg17.chr17_random 630659 4 + 2618010 TGGA s panTro1.chr19 45743981 4 - 82489036 TGGA s rn3.chr10 43289739 4 - 110733352 TCAA a score=655.0 s hg17.chr17_random 630663 7 + 2618010 CTAACAA s panTro1.chr19 45743985 7 - 82489036 CTAACAA a score=2747.0 s hg17.chr17_random 630670 15 + 2618010 GCTCTTAGTGAAGAA s panTro1.chr19 45743992 15 - 82489036 TCTCTTAGTGAAGAA s canFam1.chr9 16532211 15 - 53642819 GCTCCAAGGGAAGAA a score=8582.0 s hg17.chr17_random 630685 31 + 2618010 CAATGAGTTCTGCATAAAAGCTCCTA--TGTAG s panTro1.chr19 45744007 31 - 82489036 CAATGAGTTCTGCATAAAAGCTCCTA--TGTAG s rn3.chr10 43289944 31 - 110733352 AAATGAGCTGTATATGATAGCTCCTAACTGT-- s canFam1.chr9 16532226 31 - 53642819 AAATGAGTTCTGCATAAAAGCTCCAA--ACTAG a score=7643.0 s hg17.chr17_random 630716 41 + 2618010 ATCATTCTGCTTGGTAAAACTGGACATTATTACACAAATAT s panTro1.chr19 45744038 41 - 82489036 ATCATTCTGCTTGGTAAAACTGGGCATTATTACACAAATAT s canFam1.chr9 16532257 41 - 53642819 GTTATTTTGCCTTATAAAACTGTATACTACCACATGAATAT a score=40176.0 s hg17.chr17_random 630757 449 + 2618010 TAaaataaacacttaaagagcttctgcacagc-aaaaaaaaaaaaaaatcatcagagtgaacaggcaacctacagaatgggagaaaatgtttgcaatctatccatctgagaaaggtctaatatccagaatctataaggaatttaaacagatttataagaaaaaaaaa-ccatcaaaaagagggtgaaggatatgaacagacatttctcaaaagaagatatttatgcggccaacaaacatatgaaaaaaagctcatcatcactgctcattagagaaatgcaaatcaaaaccacaatgagataccatctcacgccatttagaatggtgatcattaaaaagtcaggaaacaacagatgctggaaaggatgtggggatacaggcatgcttttacaccgttggtgggagtgtaaattagttccatcattaccaaagactgtggcgattcctcaCAG s panTro1.chr19 45744079 451 - 82489036 TAaaataaacacttaaagagcttctgcacagcaaaaaaaaaaaaaaaatcatcagagtgaacaggcaacctacagaatgggagaaaatgtttgcaatctatccatctgagaaaggtctaatatccagaatctacaaggaatttaaacagatttataagaaaaaaaaacccatcaaaaagagggtgaaggatatgaacagacatttctcaaaagaagatatttatgcggccaacaaacatatgaaaaaaagctcatcatcactgctcattagagaaatgcaaatcaaaaccacaatgagataccatctcacgccagttagaatggagatcattaaaaagtcaggaaacaacagatgctggaaaggatgtggagatacaggcacgcttttacactgttggtgggagtgtaaattagttccatcattacggaagactgtggcgattcctcaCAG a score=21019.0 s hg17.chr17_random 631206 125 + 2618010 TGACCAATTGAAATTATATTTTACATGTAATAAAACCATTTTCTATTTACAAAAATCAAATAAAT--TCTCGTAAAGCAAACACGCCTCCATTTATTTCCCA----CTTTTTGCACAAAATTGGATTTTCA s panTro1.chr19 45744530 124 - 82489036 TGACCAATTGAAATTATATTTTACATGTAATAAAACCATTTTCTATTTACAAAAATCAAATAAAT--TCTCGTAAAGCAAACACGCCTCCATTTATTTCCCA----CTTTTTGCACAAAATTGGA-TTTCA s canFam1.chr9 16528112 128 - 53642819 TGGCCATTTTAAGTCGTATTTTAAATGTAATAAGACCA--TTCTATTTACATAAATTATATTAAGTATCTTATAAGGCAAATACTCATGCCTTCATTTTCCATATTTTTTTTGTAGAAAACTGAT-TTTCA a score=67321.0 s hg17.chr17_random 631331 725 + 2618010 CTGTAACTGAGGTGTGCTAAATGCATGGTTAATCTAGTGTCAGCATCATCTTCCTATAAATTACAGATGCCTTCTGTGAGCAGGTCTCCTGCAGGCTCATGTATGTTGTATTTTGAAATCTACTTTAGAGGATATTTTAAGACTtttagaaccagaaataccatttgacccagcaatcccattactggctatatacgcaaaggattgtaaatcattctactataaagacacatgcacatgtatgtttattgcagcactatttacaatagcaaagacttggaaccaacccaaatgcccatcaaggatagactgcataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaagaatgagttcatgtcattttcagggacatggatgaagctggaaaccatcatctcagcaaaccaacacaggaacagaaaaccaaacaccacatgttctcactcaaaagtgggagttgaacaatgagaacacatgggcacagggaggggaacatcacacaccagggcctgtcaggggatggcgggcaaggggagggatagcattaggacatatacttaatgcatgtggggcttaaaacctagacgacaagtcgataggtgcagcaaaccaccatggcacatgtatacccatgtaacaaacctgcacgttctgcacatgtatcccagaacttaaagtataattttaaaaaatttaaaaaaTA s panTro1.chr19 45744654 725 - 82489036 CTGTAACTGAGGTGTGCTAAATACATGGTTAATCTAGTGTCAGCATCATCTTCCTATAAATTACAGATGCCTTCTGTGAGCAGGTCTCCTGCAGGCTCATGTATGTTGTACTTTGAAATCTACTTTAGAGGATATTTTAAGACTtttagaaccagaaataccatttgacccagcaatcccattactggctatatacgcaaaggattgtaaatcattctactataaagacacatgcacacgtatgtttattgcagcactatttacaatagcaaagacttggaaccaacccaaatgcccatcaaggatagactgcataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaagaatgagttcatgtcattttcagggacatggatgaagctggaaaccatcatctcagcaaaccaacacaggaacagaaaaccaaacaccacatgttctcactcataagtgggagttgaacaatgagaacacatgggcacagggaggggaacatcacacaccagggcctgtcaggggatggcgggcaaggggaggggtagcattaggacatatacttaatgcatgcgaggcttaaaacctagacgacaggtcgataggtgcagcaaaccaccatggcacatgtatacccatgtaacaaacctgcacgttctgcacatgtatcccagaacttaaagtataattttaaaaaattttaaaaata a score=22182.0 s hg17.chr17_random 632056 129 + 2618010 AAAAATAAAATAAAGTATTGTTTCAGGGTAATATTAATTTGCGTTACCACCTATTTCAACACGGCAGACAATTGTACCATCTGAGACAAATGGAGCTT---------------------------------------------TGACATGAAATCTTAAAATACCCCATAAATG s panTro1.chr19 45745379 129 - 82489036 aaaaataaaataaaGTCTTGTTTCAGGGTAATATTAATTTGCGTTACCACCTATTTCAACACGGCAGACAATTGTACCATCTGAGACAAATGGAGCTT---------------------------------------------TGACATGAAATCTTAAAATACCCCATGAATG s canFam1.chr9 16532298 172 - 53642819 GAAAATAAGA-AAAGTATTA-TTCAGAGTTCTATTAAGTTGCTTTGTCATCTATTTCAATATGGAAGACAACTGCACAACCTGAGACAAATGGGGCATGtaattttaaaataattacatttaaaataattaaatttaaaataataacatgtaattttaaaatatGCCATAAATG a score=28398.0 s hg17.chr17_random 632185 305 + 2618010 GTggccgggtgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggcagatcacagggtcagtagatcgagaccatcctggctaacacggtgaaaacccgtctctactaaaagtacaaaaaattatcggggcgtggtggcaggagcctgtagtcccatctactcctgaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccagatcgggccactgcactccaccctggtcaacagagccagactccatctcaaaaaaaaaaaaaaaaaaaaaaa s panTro1.chr19 45745508 305 - 82489036 GTggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggcagattacggggtcagtagatcgagaccatcctggctaacacggtgaaaacccgtctctactaaaaatacaaaaaattatcggggcgtggtggcaggcgcctgtagtcccatctactcctgaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgtagtgagccagatcgggccactgcactccaccctggtcaacagagccagactccatctcaaaaaaaaaaaaaaaaaaaaaaa a score=36102.0 s hg17.chr17_random 632490 198 + 2618010 TA--CCGCATGAATGGATTGATAGACAA-AAAGCGAAAAAATCCAATGCTACCAGCTCTCATAAGCTCAAAATTCAATTCTCTACTCTACAAAAATCCCTGGTATAAGTGAGAGATATACCTCAAGATCTTTGCATATTCCAAAGTTTATGGCTATTACTGCCACA--GAGCTTCTTCCATAAACTTCAAACGTTTGCACTGA s panTro1.chr19 45745813 200 - 82489036 aaaCCCGCATGAATGGATTGATAGACAA-AAAGCGAAAAAATCCAATGCTACTAGCTCTCATAAGCTCAAAATTCAATTCTCTACTCTACAAAAATCCCTGGTATAAGTGAGAGATATACTTCAAGATCTTTGCATATTCCAAAGTTTATGGCTATTACTGACACA--GAGCTTCTTCCATAAACTTCAAACGTTTGCACTGA s canFam1.chr9 16532657 197 - 53642819 TA--TCCCATAAATGAAATGATAGATAACACAGTGAAATA----AATACTATCAGTCCTCATATGTTAAAAATTCAAGTCTCTATTATATGAAAACCCCTAATATAGGTAAGGGATATATCTCAAGATCTTTGCATATTCTCATATTTATGGCTACTACTAATACATGTAGCTTCTTCCATAAGCTTCTCATTTTTCTACTTA a score=364.0 s hg17.chr17_random 632688 14 + 2618010 AGAGCACTGTGTCT s canFam1.chr9 16532854 14 - 53642819 GGAACACCACTTTT a score=1409.0 s hg17.chr17_random 632703 29 + 2618010 GGGACTACTTTACTATCACTAGCTTCATA s canFam1.chr9 16533015 29 - 53642819 AGGATCACTTCATTAGCATTACCTTTATA a score=10404.0 s hg17.chr17_random 632732 102 + 2618010 ATGGTGTTTTCTCCTTGGTGTAAT-ATTTCA----------CAAGGAGACAAAGAA-----TACGTATGTGTGTATGTGAATCATT-CATGCTAGTTACCACGTAAATAACAACAAGCA s rn3.chr10 43290428 113 - 110733352 ATGGTGTTTT-TCCTTGGGGTAATTAGTTCATACATGCACACACAAAAACAAAGAC-----TACGTATGCGTGTGCATAGGTTGTGGCACTGCAATGCCTACGTGAATAACGAGAAGCA s canFam1.chr9 16533044 107 - 53642819 ATGGTGTTTTCTCCATGGAGTGAT-GTTTCA----------CAAAGAAATAAAAGTATATGTATGTATGTATGTGTATAAACCATT-TCAGGTAGTTACCAAGTAAATAATAACAAGCA a score=1818.0 s hg17.chr17_random 632834 164 + 2618010 GCAAATACGAAGTTAAAAGTGAAGTTGCAGTGTAAATGCTGCTGTCCAGATGGGTGAG---GCTTACTCATCCGCCAAGCGAAGTCCTCAACCTCGCCTCCACCGCACACAGCGTTCAAATTTCCATCTCAACAGAACTTACGCATCATGAACCTTTACGGTTCATA s rn3.chr10 43290541 150 - 110733352 GCAG-TAAGAACATAGAGCCAAGGCTGAGGC---AAGCTTGCTGTCCAGAAGGGTGAATGTGCT-----ACCAGGCAGCAGACGTCCCTGACAGCAGCCCCACAGCATACAACATTCACGT--CTATTTCAACAAAACCA------CATGAGTTAACTGAGCTCAGA a score=11266.0 s hg17.chr17_random 632998 72 + 2618010 AACAGTTGAGAAAGCTAACATCAAATTCTTGCATGCCAAGAGTCTACAAATTATTCCATTCACAGATGTTAT s panTro1.chr19 45746014 72 - 82489036 AACAGTTGAGAAAGCTAACATCAAATTCTTGCATGCCAAGAGTCTACAAATTATTCCATTCACAGATGTTAT s rn3.chr10 43290691 68 - 110733352 AATACTAGAGAAAGGGAAGGTCATGTCCTTAAATGCCAGGATTTT--AAATCATTTCACT--GAGATGTTAT a score=29387.0 s hg17.chr17_random 633070 331 + 2618010 AATCGGAtttttttttttttttttttttttttttttgatacggagtcttgctctcacccagactatagtgcagtggcgcgacctcggctcactgcaacctccgcctccggggttcaagcaattctcctgcctcagcctcccgagtagctggaattacagacacgcgccaccatacccgctacttttttgtatttttagtagagacggtgtttcactatattggccaggctggttttgaactcctgacctcaagtgatccgcccacctcagcctccccaagtgctgggattacaggcgtgagccacctcgcccgactCTGATCATTACTTAA s panTro1.chr19 45746086 321 - 82489036 AATCGGAttttttttttttttttttt----------gatacggagtcttgctctcacccagactatagtgcagtggcgcgacctcggctcactgcaacctccgcctccggggttcaagcaattctcctgcctcagcctcccgagtagctggaattacaggcacgcgccaccatacccggtacttttttgtatttttagtagagacggtgtttcactatgttggccaggctggttttgaactcctgacctcaagtgatccgcccacctcagcctccccaagtgctgggattacaggcgtgagccacctcgcccgactCTGATCATTACTCAA a score=23596.0 s hg17.chr17_random 633401 133 + 2618010 TTAGGATAAAACCATTCCTTAGAAAGGTCATTCAATTCTGATGATTGTATATCTCATATTTTTCAAATACTCTCATTGTTAATAAGC---------ATTTCACTCCACTAAGGCTACCCTGGCATCAAACGTATTTCAGATT s panTro1.chr19 45746407 133 - 82489036 TTAGGATAAAACCATTCCTTAGAAAGGTCATTCAATTCTGATGATTGTATATCTCATATTTTTCAAATACTCTCATTGTTAATAAGC---------GTTTCACTCCACTAAGGCTACCCTGGCATCAAATGTATTTCAGATT s canFam1.chr9 16533301 142 - 53642819 TTGGAATAAAGCCACTCCTTGTAAAAGTCACTAAATTATGGTGATCATATGTCTTATACTTTTCAAATATGGTCATGCTCCATTAACACAATTAAAATTTAATTTCACAAAGATGATCCTAACATTAGAAGTATTTCAAATT a score=6040.0 s hg17.chr17_random 633534 65 + 2618010 Tggccaggctcggcagctcatgcctgcaatcccagcattctgggaggtcgaggtgggtggttcac s panTro1.chr19 45746540 65 - 82489036 Tggccaggcccggcagctcatgcctgcaatcccagcattctgggaggtcgaggcgggtggttcac a score=16682.0 s hg17.chr17_random 633883 276 + 2618010 ttttttgtgtttttttg---accgagtctcgctctgtcacccaggctggagtgtggtggcgcggtctcagctcactgcaagctccgcctcccgggttcacgccattctcttgcctcagcctccctagtagctgggactacaggcgcccgccaccacgcccggctaattttttgtatttttagtagagacggagttttaccatgttagccaggatggtctcgatctcctgacctc--gtgatccgcccacctcggcctcccaaagtgctgggattacagacg s panTro1.chr19 53276745 276 - 82489036 tttttt---tttttttggagatggagtattgctctgtcacccatgctggcatggagtaacgcgatctcagctcactgcaacttctgcctgccaggttcaagcaattctcctgcctcagcctcctgtgtagctgggattataggcgcctgccaccacacctggcttattttt-gtatttttggtagagatggggtttcaccatgttggccagg-tggtcttgaactcctgacttcaagtgatccgcctgcctcggcctcctaaagcgcgggaagtacaggcg a score=254784.0 s hg17.chr17_random 634159 2764 + 2618010 tgagccaccattcccggccCAACACAATGAGTTTTAATAGACAG----AGTCAGGTGACATTCATCTATCTAGTCCTACACGCCATTTTGGCATTGAAGGGTTCCACAGGGCTGGAGTCACTTAGCTCTAGGTGCACAATTCTAGTGTATGAGTATACTTTTCTATTCTAAAGCCGCAATGAGCAAAATGGGTCAGTGTAATTGTAGAATTCATCTTctacatatcaagcactgtaataggtaaacattttatatacatcctctctaatctttgcaacattccacaaagtaagggttattttacccattgaaaaatcactggaaagtcagaggatttagggccattgcccccaacatctacagcccacaccaagatttgaacccagatctctctggtttcaaaaccctgccctaatcatttcactgtattacCAATCCAAGGAATAAATAAAGTTAAGGTATCTTAGTCAGATAAAAGTGGCAAATTAgaccaggcgtggtggctcacgcctgtaatcccagcacttcgggaggccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccacctctactaaaaaaatacaaaaaattagtcgagcgtggtgacacacgcctgtagtcccagctactcgggaggctgaggcaggagaatcgctcgaagctgagaggcagaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacacagtgagactccatctcaaaaaaTTTTTTAAAAATGTGGCAAATTAATGAGAGGAAAATTTAAAAAGTTAACCCCACAAACCAAGAAATCTATTTATGATTATGtttgttgtaagagacagagtcttgctctattgtccaggctagtctcaaagtcctgacctcaagcaatcctcccgactcagcctcctgagtagtggggattataggcgTTACAGGCATGAGCCAATGCCCCCAGCAAGAAGTCTGTATGTTCTTATCATACGTGCGACTAAACAAAATTATACTTAAGAAACTGACAAATCATGGTAATATTTTAAATATCATGACTACACTGAAACCCTGCCAGAGGTATTTTTAAAATGTCAAGGAtttttttgattttttttttttgagacagagtctccctctgttgcccaggctggagtgcagcagtgagatcttggctcactgcaacctctacctcccgggttcaagcaattctcctgcctcggcctcccgagtagctgggatggcaggcacgtgccgccacacccggctaacttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgcactcctgaccttgtgatccgcccacctcggcattcccaagtgctgagaatacaggcgtgagccaccgcgcccggccAAAATGTCAAGGATTTTTACGCTGATGTGCTTAATGTGTCCAATCTGCAATTCTAGTGGTAATCAGTGACATACCCATAAATCAGAGAGTACTTCTATGAAAATAATCACAGCCTACAAATACGGATAAAACTCCTCAGCTTTACCTCTTAGATGGTTCTAGACAGTTTCAGAATTCGTGCCTCTTTCTTCAACTCTCTCATTAATTTTATTACCCTTGGCAGTAAAATAATCTTACCAATTGCTCTCCCTATGAAATTGTGAATGAAAATTCCCATTTCTCTTTGCTAGGTCTTGTTAGCTGCCATCTCTGGGAAGGAGAAAGTGTTTTTATAGATAGGCATGGCAAGGACAAATAATGGAGTTGAAATGCAAGGGTggatggcaaataaattgcatcttgtgaactacctccaactaacttctgcctggagcactgtgtttaaaaggattcctaggccacatctggAGggatccggg-aaaaaaaaaaacaaaagagatgtaacgaaggtaagcggagaaccagtaaagtgtagtgctacagtagcctagggtttcaaggaaaggagattataatatccagtcaggcagagcagcagtcaaacaacatgaagaaaaatgtccacgagacttggcatgtaggagatcactgatgtgcctattgacaagttcagtagcgttgtgagggaaaagtcaatgggctaaagcggaaatgagtgctgacacagagacagcaggtgtaaacCAGAGACAGAGCCAGTGTACCGGATGGCTGAAGTCAAATACTTACGTAGCAAATGGGGATAGAGACACGTGTCCGATGGATGTATTGGCCTTCTCAGGACAAATATTCCATCCCCTGAAAACCACAGGAAAGGGGTAAAGAAGGATACTCCTATAGGTCAATTTACAGAAGAGAGCAAAACCTTAAAAttgtcaacgaagtaggagctaagaacctctgtatcaggtgaagagacaggaaggtcaagacggggaaggagaagatttgctaaagatgttgaagagaatgagagaactaaacagggctgggcaagc-aaaggcatcaggcaaggctgagtactcagatgaggttgaaattatgtaatagttacattaaaacagggttaatctgtatgactaggtgctttttctttagccttcagatacagaagtagaacaacaga-ctgtggattgggctggcattttgccaggatacaccaggaagac--gggcacaggaaaggcccaatgttgggagtatttccattaatctcctatgagatccaggctggctagggtagcaaggcaggttataagaagAAAAATACAGACAAACTCGTGAG s panTro1.chr19 45747062 2773 - 82489036 TGAGCCACCATTCCCGGCCCAACACAGTGAATTTTAATAGACAGTCAGGGTCAGGTGACATTCATCTATCTAGTCCTACACGCCATTTTGGCATTGAAGGGTTCCACAGGGCTGGAGTCACTTAGCTCTAGGTGCACAATTCTAGCGTATGAGTATACTTTTCTATTCTAATGCCGCAATGGGCAAAATGGGTCAGTGTAATTGTAGAATTCATCTTctacatatcaagcactgtaataagtaaacattttatatacatcctcgctaatctttgcaacattccacaaagtaagggttattttacccattgaaaaatcactggaaagtcagaggatttaaggccattgcccccaacatctacagcccacaccaagatttgaacccagatctctctggtttcaaaaccctgccctaatcatttcactgtattacCAATCCAAGGAATAAATAAAGTTAAGGTATCTTAGTCAGATAAAAGTGGCAAATTAgaccaggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccacctctactaaaaaaatacaaaaaattagtcgagcgtggtgacacacgcctgtagtcccagctactcgggaggctgaggcaggagaatcgctcaaagctgagaggcagaggttgcagtgagccgagatcgtgccactgcactccagcctgggtgacacagtgagactccatctcaaaaaaaTTTTTAAAAATGTGGCAAATTAATGAGAGGAAAATTTAAAAAGTTAACCCCACAAACCAAGAAATCTATTTATGATTATGttttttgtaagagacagagtctttctctattgtccaggctagtctcaaagtcctgacctcaagcaatcctcccgactcagcctcctgagtagtggggattataggcgTTACAGGCATGAGCCAATGCCCCCAGCAAGAAGTCTGTATGTTCTTATCATACGTGCGACTAAACAAAATTATACTTAAGAAACTGACAAATCATGGTAATATTTTAAATATCATGACTACACTGAAACCCTGCCAGAGGTATTTTTAAAATGTCAAGGAtttttttgattttttttttttgagacagagtctccctctgttgcccaggctggagtgcagcagtgagatcttggctcactgcaacctctacctcccgggttcaagcgattctcctgcctcggcctcccgagtagctgggatggcaggcacgtgccaccacacccggctaacttttgtatgtttagtagagacggggtttcaccatgttggtcaggctggtctcgcactcctgaccttgtgatccgcccacctcggcatccccaagtgctgagaatacaggcgtgagccaccgcgcccggccAAAATGTCAAGGATTTTTACGCCGATGTGCTTAATGTGCCCAATCTGCAATTCTAGTGGTAATCAGTGACATACCCATAAATCAGAGAGTACTTCTATGAAAATAATCACAGCCTACAAATACGGGTAAAACTCCTCAGCTTTACCTCTTAGATGGTTCTAGACAGTTTCAGAATTCGTGCCTCTTTCTTCAACTCTCTCATTAATTTTATTACCCTTGGCAGTAAAATAATCTTACCAATTGCTCTCCCTATGAAATTGTGAATGAAAATTCCCATTTCTCTTTGCTAGGTCTTGTTAGCTGCCATCTCTGGGAAGGAGAAAGTGTTTTTATAGATAGGCATGGCAAGGACAAATAATGGAGCTGAAATGCAAGGGTggatggcaaataaattgcatcttgtgaactacctccaactaacttctgcctggagcactgtgtttaaaaggattcctaggccacatctggAGGGATCCGGGAAAAAAAAAAAACAAAAGAGATGTAACGAaggtaagcggagaaccagtaaagtgtagtgctagagtagcctagggtttcaaggaaaggagattataatatccagtcaggcagagcagcagtcaaacaacatgaagaaaaatgtccacgagacttggcatgtaggagatcactgatgtgcctattgacaagttcagtagtgttgtgagggaaaagtcaatgggctaaagcagaaataagtgttgacacagagacagcaggtgtaaacCAGAGACAGAGCCAGTGTACCGGATGGCTGAAGTCAAATACTTACGTAGCAAATGGGGATAGAGACACGAGTCCGATGGATGTATTGGCCTTCTCAGGACAAATATTCCATCCCCTGAAAACCACAGGAAAGGGGTAAAGAAGGATACTCCTATAGGTCAATTTATAGAAGAGAGCAAAACCTTAAAATTGTCAACGAAGTAGGAGCTAAGAACCTCTGTATCAGGTGAAGAGACAGGAAGGTCAAGACGGGGAAGGAGAAGATTTGCTAAAGATGTTGAAGAGAATGAGAGAACTAAACAGGGCTGGGCGAGCAAAAGGCATCAGGCAAGGCTGAGTACTCAGATGAGGTTGAAATTATGTAATAGTTACATTAAAACAGGGTTAATCTGTATGACTAGGTGCTTTTTCTTTAGCCTTCAGATACAGAAGTAGAACAACAGATCTGTGGATTGGGCTGGCATTTTGCCAGGATACAGCAGGAAGACAGGGGCACAGGAAAGGCCCAATGTTGGGAGTATTGGCATTAATCTCCTATGAGATCCAGGCTGGCTAGGGTAGCAAGGCAGGTTATAAGAAGAAAAATACAGACAAACTCGTGAG a score=18124.0 s hg17.chr17_random 636923 227 + 2618010 ACTGCAGAGGCTTGGAAGGAGAAAATGTGTTGGGTGACAGTGAGATGCAGAAGATTTCTAAGGTGATACACCTGTAGAGGAGAAGGTGGAGGTCCCAGCCCGGGGAAAAGGTGGCTAATCTGCCCCTGGTGATGACCACTGGCATTAAAGGAATCCAGAAGAGACGAGGCTTTTTCTGTTTGTGGAAGTTATCTCCTTGTCCAAGTTTCTCTTCACCACTGAAAACC s panTro1.chr19 56096808 227 - 82489036 ACTGCAGAGCCTTGGAAGGAGAAAATGTGTTGAGTGACAGTGAAACGCAGAAGATTTTTAAGGTGATAGAACTGTAGATGAGAAGGTGGAGGTCCCAGCTCTGGTGAAGGGTGGTTAACCTGTACCTGGTGATGACTACTGGCATTAAAGGAATCCAGAAGAGATGAGGCTCTTTCTGTTTGTGTAAGTTATCTCCTTATCCAAGTTTCTCTTCACCACTGAAAACC a score=11329.0 s hg17.chr17_random 637150 156 + 2618010 TCTGAAAGTTGTCAACTTCATTAAGGTAGATTCAGAAG---AC----CTTTTGATTCAAAATGACAAAATGCTTCTAGAGAAAAAGCAC-ATATGTCTGGTCA--GATAATGCGTGT--------------ATGACTTCGGACAAATCATAGCATTTCAGTGTTTGAGGTA--ATCTAGTCT s panTro1.chr19 56097035 159 - 82489036 TCTGAAAGTTGTCAGCTTCATTAAGGTAAATACAGAAG---ACGTAGTTTTT--TTCATAATGACAAAATGCTTCTACAGAAAAAGCACCATATGCCTGGTCA--GATAATGAATGT--------------ATGGCTTGGGACAAATCATAGCATTTCAGTGTTTGAGGTA--ATCTAGTCT s danRer1.chrNA 232250550 170 + 390413307 TTTTAAAGTT-TAAGCAGTAAGAAGCTAAATTGATAAGTAAAC----ATTGCAATTCAAAAATGAAAAATGCTTTTAGTAAATAAATAT-GTGAATTTAATTAATAATATTAACTATGAGCTATAGCAGTAATGATTTTTAACAGTT------ATTCCAGATATTGGGCCACCATGTAGTAT a score=2867.0 s hg17.chr17_random 637306 33 + 2618010 GTCTGTCCTCTTTATTCCTTAACTCTCCATCTG s panTro1.chr19 56097194 33 - 82489036 GTCTGTCCTTTTTATTCCTTAATTCTCCATCTG a score=1692.0 s hg17.chr17_random 637339 39 + 2618010 TACAGACAGAAACAATGTAATCAGCCACATAACTTGTAT------- s panTro1.chr19 56097227 39 - 82489036 TAAAGACAGCAACAATATAATCAGCCATCTATCTTGTAT------- s danRer1.chrNA 232250751 40 + 390413307 TATGGAAATAAAAAATGCAATA------CTAAAATATGTGACAGAG a score=22015.0 s hg17.chr17_random 637378 168 + 2618010 AAAATAAATATGAAGAGAGAA---CCAATTATGAA-GGTAGAAGTTCTTGGGGTGAGGGGAGGAATTTTAAAATACAAAATTAACT-AGCTACTTC-TTCAAGAAGAAAAATATCAGGGAGTACTGAAAGAGAACAATTGCAGAAAGGAAGAGAAAT-TAACGTGAACAGCAACC s panTro1.chr19 56097266 168 - 82489036 AAAATAAATATGAAGAGAGAA---ATGATTATAAA-GGCAGAAGTTCTTGGGGTGAGGTTAAGAACTTTAAAATACAAAATTAACT-AGATACTTT-TCCAAGAAGAAAAATATAAGGGAGAGCTGAAAGAGAACAGTTGTAGAAAGGAAGAGAAAA-TAATCTAAACAGCAATG s canFam1.chr9 16540729 160 - 53642819 AAAGTAA--AGGATGAGAGAC------ATCATAAT-GGTAATAGTTCTTAAAGGAAAAAAAGAACTTTAAAAATAGAAAACTAATTCAGATACTTCTTTCAAAAAGGAAAATATAAAGAACAA-TGAAAGAAAATGGTT----AAAGGAAGAGAAAT-CAATCTAAATAGCAAGC s danRer1.chrNA 232250791 162 + 390413307 AAAATAA--AAGATAAGATAATGACAAATGGCAAACAGAAGAAACATTTGATGTAAGCGGTGAA-----AAAATAGAAACTGAGTATAGAAAATGT-TACAATGTAAAA---ATGAGTGGCTAGTCAAGG--AACACTAGCATAGATGAGGAGAAATGTAAAGTAAAGCATAATC a score=7081.0 s hg17.chr17_random 637546 44 + 2618010 AAAAACCTTCTAAGAATGTATC-----AACAGTCCAGTGGAAAACAAAT s panTro1.chr19 56097434 44 - 82489036 AAAAAATCTCTAAGAATGTATC-----AACAGTCCAGTGAAAAACAAAT s canFam1.chr9 16540889 49 - 53642819 AAAGAGCTCATAGAAATACATCTACATTACAGCCCAGTAAAAAACAAAT a score=1034.0 s hg17.chr17_random 637590 6 + 2618010 acccac s panTro1.chr19 32890362 6 - 82489036 acccac s canFam1.chr9 16540938 6 - 53642819 AGCTAC a score=44583.0 s hg17.chr17_random 637596 290 + 2618010 cctgatgacaccttgatcttggacccacggcctccagtactgtgagacagtaacattctgttgctgaaggtgcccagtctgtggtact---gtaaaacagccctaggaaactaacacaGCCTGTTAGCCCACAGATGGTGGAGAGAAGGAATGCTCAGTGGAGCTCCAGGCTTACTGTCTACAGCtcccaaagtgtgctacaggacccctggatgggtgtaggtatgcaagataattttgggtggtgcagggtgaataatttcaaatgacataaaaatgtgtttctcttACTG s panTro1.chr19 32890368 289 - 82489036 cctgctggcactttgatcttggactcatggcctccagtactgcgagatagtaa-attctgttgttgaaggtgcccagtctgtggtact---gtaaagcagccctaggaaactaacacaGCCTGTTAGCCCACAGATGGTGGAGAGATGGAATGCTCCATGGAGCTCCAGGCTTACTGTCTACAGCTCCCAAAGTGTGCTACGGGACCCTTGGGTTGGTGTAGGTATGCAAGATAATTTTGGTTGGTGCAGGGTGAATAATTTCAGTTGACATAACAATGTATTTATCTTACTG s canFam1.chr5 46598167 279 - 92064832 cctgctggcaccttgattccagatggcacacctggagaagtggggaacagcga-ctttcgcc-tttagactacccagtgtgtgctactttgttacagctgcctcaggaagcCGGGACAGCCTGTTAGCCCTTGGAGGGTGGACAGA------------TGGAGCATCAGGCACCCTGTCTACACCTCCCAAAGTGTGTTATGTGAACCTCTGGTGCACGTAGCTGTGCAAGGTAATGTTGGGTGGCACAGGATGAATCATTTTAATTTACACAATTGTGTATTTCTCTTACTG a score=40183.0 s hg17.chr17_random 637886 504 + 2618010 GGTAAATCAGGGGTCCCCAcctgttaggaaccagacaacacagcaggaggtgagcagccagccagggagcaaagcttcatctgtagaaacagccgctccccatccctcgcattaccgcatgagctctgccacctgtcagatgagtggtgccgttccattctcata-------gaacccagctgggaactgagcatgccagagatctagattgcgtgctccttatgagaacataatgcctgatgatctctgactgtctcccatcacccccaagtgggaccacgtaattacaggaaaacaagctcagggctcccactgattctatgttatggtgagttgtgtaattatttcattatatattacagtgaaataatcacagaaataaagcacacaataaatgtaatgggctcgaatcatctctgcaccatcccttccccttctcccaggtccgtggaagagttgtcttcaagaaaactgctctctggtgccaaaacgtttggggaccgctgGTGT s panTro1.chr19 32890657 511 - 82489036 GGTAAATCTGGGGTCCCCATctgttaggaaccaggctgcacagcaggaggtgagcagccagccagcaagcaaagcttcatctgtagaaagagccgcttctcatccgtcgcattaccgcatgagctctgcctcctgtcagatgagcggtgccattagattctcataggtccgtgaaccctactgtgaactgcgcatgccagggatctagattgcgtgctccttatgagaacctaatgcctgatgatcggtgactgtctctcatcacccccagatggaaccatgtagttgcaggaaaacaagctcagggctcccactgattctacattatggtgagttgtataattatttcattatgtattacagtgaaataataatagaaataaagcacacaataaatgtaatgggcttgaatcatctccgcatcaccccttccccttctcccgggtccgtggaagagttgtcttcaagaaaactggtctctggtgccaaaatgtttggggaccattgGTGT a score=12203.0 s hg17.chr17_random 638390 112 + 2618010 AAATGTTTCTAAGAATAGTT--AAGCAACTTAAGCTTCACGTGCTACG------AAGAATACAGCTTTAAATGCTAATAAAAATAGGTGCAAATGAAAACA--CTCTTTCTGTGGTCCAGGG s panTro1.chr19 32891168 120 - 82489036 AAATGTTTCTAAGAATAGTT--AAACAACTTAAGCTTTACATGCTACAAAAAATAAAAATACAGGTGTAAATGCTAATAAAAATGGGTGCAAATGAAAACACCCTCTTTCCATGGTCCAGGA s mm5.chr11 60888004 104 - 121648857 AAATGCTTCTGAGAGTATTTTCATGCACCTGGAAGTTT----------------TAAGAGATAAGCACAGGTGCCCATAAAAAGTGATGCAATTGAACAGA--CTCTTGCTGAGGTCAAGGT a score=12688.0 s hg17.chr17_random 638502 224 + 2618010 AATCTTAACCATTCTATCAGAAAGA-----CTTGCAGCTTGGAGCTGCAGCT------GCCCTCCCACATCCTGTCCGCTGTAAAGCCCTGCAacacacacatacaggcgcacacacacacacgcacacatgcacatacaTG--CacatgcatatacttgcacacacacatgcacacacacatgcacacagatgcacatacataaatacaTTCACATGTATATA---CCTGcacacacac s panTro1.chr19 32891603 202 - 82489036 AATCTTAAGCATTCTATCAGAAAGA-----CTTGCAGTTTGGAGCTGCAGCT------GCCCTCCCACATTCTGTTCACTGTAAACCCCTACAacacacacacaca--cacacacacacacacacacacacgcacatacatattcacatgtacatacctgcacacacaca--cacacgcacat------------atatacata--------cacatgcatata---cctgcacacacac s mm5.chr11 60888108 168 - 121648857 -------AACA-CCCATCACCTAGATGGTTTTTAGATGTTTGGCCTTCACCTAGAAGGGCCCT----CATCTTTCTGGCTATA-----CCACATCAGCCAGACACA----TATGTACACACACATCTGCATGCACAGA-ATT------------------------------CACACACATAT------------TTATAGGCG--------CACATATACACACAACTCATACAGACAC a score=12187.0 s hg17.chr17_random 638726 154 + 2618010 acatgcacacacatacacatgca---------tattc------------ctgcaaacacacacacacacaca--------------------------cacacaca-cacacagacacacacGCTG-----TGCTTCATGCCCTCACTAGGGTGGCCTGGGAGGAAATGCGTGTTTTTAGGAGAAATGAAGACAACTC-AGGCCCC--TC s panTro1.chr19 32891805 196 - 82489036 ata--cacacacacacacatgcacct---acatattcacatgtacatacctgcacacacacacacacgcacatatatacatacacatgcatatacctgcacacaca-catacacacacacacGCTG-----TGCTTCATGCCCTCACTAGGGTGGTCTGGAAGGGAATGTGTGTTTTTAGGAGAAATGAAGACAACTC-AGGACCC--TC s mm5.chr11 60888276 165 - 121648857 ACA---ACTCACGTATACATGCACATATGACATAACC------------CCGAATCTGCACATACACATACAAGT-----------------------TACTTAAATCACAAATACATCCACACTG-----CACTCAGCTATCTGCCTAAGGC--CATAGGAAAGACCACTTGTTTGTAAGAATTGTAAGGGTAATGCTAGGTGCCGGTC s canFam1.chr5 46598763 156 - 92064832 ----GCCTGCACCTTCCTGTCCACCCC-----TAGCC------------CACTacacacacacacacacaca--------------------------gatgcaca-cacacacacacacacGTTGCACCATGCTTCA--CCATGCCTAAGGAGGCACAGTGGGGACTTTGT-TTCAGAAAAGAAATGCAGGTGTGCC-CAGCCCT--CC a score=0.0 s hg17.chr17_random 638880 14 + 2618010 ATTCTCCTGGTGTT a score=1564.0 s hg17.chr17_random 638880 7 + 2618010 ATTCTCC s panTro1.chr19 32892001 7 - 82489036 AATCTCC s mm5.chr11 60888441 7 - 121648857 ATTCTCC a score=143.0 s hg17.chr17_random 638887 7 + 2618010 TGGTGTT s panTro1.chr19 32892008 6 - 82489036 TGGTG-T a score=1721.0 s hg17.chr17_random 638894 29 + 2618010 TGCACAAGTGCCTT--CTCTGCAGACCATGC s panTro1.chr19 32892014 29 - 82489036 TGCACAAGTGCCTT--CTCTGCAGACCATGC s canFam1.chr5 46598919 22 - 92064832 TGTAGAGGCACACTGGCTTCGC--------- a score=57551.0 s hg17.chr17_random 638923 481 + 2618010 TTCAGCCTCTTTCTTGGTTCTCCCTCTT-ACTGAAAGAGAGAAGCAGAGGCCCGGCACATACTCGGCTGCTTAGGGCTCAAGCCAAGTTCGCAAGCTTCCTGGG----GAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCCAAAAGAGTCGTCGGCTTTTC-GTGGATCCTTGAGCCCAGGAAGGA------GATAGGTGAGACATCACAGTTCATC----AGAAGACACGAGCAAACTCCGGCGAGAAAGGGCAACGGTCA-------AAGATTTTATTCTCTCGGAAAAGGGTTCT-CGGGCTGTAAGCAGCAGGCA--GAAGACTTTATTGCACGCGTAGTTAGGTGATGGCGACCTACGGTTTTCACTGGGGACTGGGATCGAGAGTGATCCGACCTCCTACTCATGCTCGtctctccctgtctctctctttgccttttgtgtctctctgcctgtctctctcgctccttttcctctcagcctcctctgtctctctcctta s panTro1.chr19 45751822 479 - 82489036 TTCAGTCTCTTTCTTGGTTCTCCCTCTT-ACTGAAAGAGAGAAGCAGAGGCCCGGCACATACTCGGCTGCTTAGGGCTCAAGCCAAGTTCGCAAGCTTCCTGGG----GAGCCTAGTGAGATGAAGGCACTGCAGAGCCTCCCCAAAAGAGTCGTCGGCTTTTC-ATGGATCCTTGAGCCCAGGAAGGC------GATAGGTGAGACATCACAGTTCATC----AGAAGACACGAGCAAACTCCGGCGAGAAAGGGCAACGGTCA-------AAGATTTTATTCTCTCGGAAAAGGGTTCT-CGGGCTGTAAGCAGCAGGCA--GAAGACTTTATTGCACGCGTAGTTAGGTGACGGCGACCTACGGTTTTCACTGGGGACTGGGGTCGAGAGTGACCCGACCTCCTACTCATGCTCGtctctccctgtctctctctttgccttttgtgtctctc--cctgtctctctcgctccttttcctctcagcctcctctgtctctctcctta s canFam1.chr5 46598941 468 - 92064832 -----TCCATCCTTTGGCTTTCCCTCTTAAAAGAAAGCGCACAGCAGAGTCCC-GTGTGTGCTC-GCTGCCTCCCACCGGCACC-GGTCACCGAGCTCGGCGGGTCCTGAGCCTGGTGGGGACCGTCAACTCGCAGGTCTTCGGAAACCAGGCGGCTGCGCTGCGGTGGAGCCTTGAGCCCAGGGAGGCGAGCGGGAGAGGTGGGACCTCCAGAGTCACCGCAGGGGAGACACGACCGAAAGCAGG-GATAGGGAGGAGTGGGCAGCCCGAGAAGGTTTTATT-TCTAAGGAAGGGCTCCTGGGGGCTGAGTCCGGCAGGCAAGGATGACTTCACTGCAGGTATG--CAGG-GGTGGTGACCTGCAGTGGACACGTGGGATAAAGACGGTGACCGACCTGTTC-----------CCCGCCTCCCTCCGCATCTCTCTTC----------CCTCCC--CCTGTCTCAAccctccccttccctctccaccctccc---ctccctcccca a score=1780.0 s hg17.chr17_random 639404 6 + 2618010 tctctc s panTro1.chr19 45752301 6 - 82489036 tctctc s mm5.chr11 60888585 6 - 121648857 TCCTTT s canFam1.chr5 46599409 6 - 92064832 cctctt a score=0.0 s hg17.chr17_random 639410 21 + 2618010 atcctctctctctctatctca a score=-128.0 s hg17.chr17_random 639410 21 + 2618010 atcctctctctctctatctca s panTro1.chr19_random 41324392 13 + 57627672 ttcctctctcact-------- s mm5.chr11 60888591 13 - 121648857 ATCGTGTCTTCAT-------- a score=5774.0 s hg17.chr17_random 639431 57 + 2618010 ctcccttctccccatctctctttctctctccttctTTTCCACTTCTCTCACCCTCCT s panTro1.chr19_random 41324405 57 + 57627672 ttcccttctcctcatctctctttctctctccttcttttccagttctctctccctcct s mm5.chr11 60888604 57 - 121648857 CTGTCTCTTCTCCATCCCTTTCCCCCTCTGTCACTCCATCCTCTAAATTGTCTTTTT s canFam1.chr5 46599415 38 - 92064832 ccccctccgccccAGCCGTCCCCCA-------------------GGCTCACCCTGCC a score=27316.0 s hg17.chr17_random 639488 267 + 2618010 CATCTCTCTGCCTG---CCACTGTTCAGGCTCCTGGG-----GCCCCACGTGGATGGGCGGACACAGGACTCCTA--GGCTACCTTTCATAGCGCAA-GCAGAGGGCTGCAGGACCTTGGT-------------CCCCACCTCCCAGCATCCTCAAAATGAGGGGTGTGGGGTGTG-CCGTGCTCTCCTGAGTGGGCGCCCCACACTCCAGGAAGC------AGAAACTGCAGGTCACAGCTGGCTCG-AGTG-----GTGCCCACGGGGCTGCCAG--CTTCCATCGTGTGATCTGCTGAGGCCA s panTro1.chr19_random 41324462 271 + 57627672 catctcgctGCATG---CCACTGTTCACGCTCCTGGG-----GCTCCACGTGGACAGGTGGACATGGGACTCCTA--GGCTAATTTTCACGGCACAA-GCACAGGGCTGCAGGACCTTGGT------------CCCCCACCTCCCAGCACCCTCAAAATGAGAGGTGTGGGGTGTGCCCGTGCTCTCCTGGGTGGGCGTCCCACGCTCCAGGAAGC------AGAAACTGCAGGACAAAGCTGGCGCA-AGTG---ACATGCCCACGTGGCTGCCGG--CTTCCATCTTGGGATCTGCTGAGGCCA s mm5.chr11 60888661 253 - 121648857 TATTTTTCGGGCTG----------TCAAGTTGCCGGACGAGCGTCCCCAGTGGATGCGCG----CAGGACACCCA--GGCCGCCTACTGTTGCACGC-ATACAGGGCTGCGGGGCGGCAGT-------------GCCCGCGAAGCCGTGTATCCCGAGCGA----------ACGCG-GCGCGCTCTCCTGAGTGGGAGAACTGCGCTCCGGGAAGC------AGAAGCTACACGTTTCCACAGGCTGG-GGTG---ACGCGGTCACCTCGTCGCAAG--CCTCTGTCACGGGGCCTGCAGTGACAA s canFam1.chr5 46599453 271 - 92064832 CGCGTCG-----------------TCAGGCAGCGGGG----CCTCCCTCCTGGGCGGGGGCGCACAGGACCTCGA--ggccgcggtccggggcgcgc-gcgcagggccgagcgggggcgctgaggccgaggagcccgcgccggcccgagggcgccgtgtcgggggtcccgggcgcgcccgcgcTCTCCTGGGTGGGCTGCCTGCGCTCCGGGAAGC------AGAAGCTGCACGTCTCCACCGGCTCT-GGCGGCGACGCGCCCGTGGCGCTCCCCG--CTTCCATCCAGTGATCTGCGGGAAG-- s danRer1.chrNA 232253895 258 + 390413307 CACTTCTCTCCCTGGACTTGCAGTATAGGCCCCAGGG-----TGCCCCCTTG------------CAGTCCACCTAGGGGCCTCTGACCCAAGCAAGCTACCCAGGG-------------GT-------------CCACCTCTCCCCGTGGACTTGCAGTATGGGCCCAAGGGTGCC-CCCTGGCCCTCCACCTAGGTGCCTCTGACCCCAGCAAGCTACCCAGGGGTTTACCTCTCTCCCCTCACTTGTAGTA---TAGGCCCCAAGGTTCCCCCTGGCCCTCCACTTAGAGGCCT-CTGACCCCA a score=0.0 s hg17.chr17_random 639755 8 + 2618010 AAGCAGAG a score=273.0 s hg17.chr17_random 639755 1 + 2618010 A s panTro1.chr19_random 41324733 1 + 57627672 A s mm5.chr11 60888914 1 - 121648857 A a score=1531.0 s hg17.chr17_random 639756 7 + 2618010 AGCAGAG s panTro1.chr19_random 41324734 7 + 57627672 AGCAGAG s canFam1.chr5 46599724 7 - 92064832 GGCGGAG a score=-3322.0 s hg17.chr17_random 639763 30 + 2618010 GACA---GCAGCCCA--GGCCCATCTCTGCAGCAg s panTro1.chr19_random 41324741 30 + 57627672 GACACCTGC--CCCA--GACCGA-CCCTGCACCAg s canFam1.chr5 46599731 18 - 92064832 GGCG---ATGGCCTT--GGCCTT------------ s danRer1.chrNA 232254153 32 + 390413307 GCAA---GCTACCCAGGGGTCCACCTCTCTCCCTG a score=3131.0 s hg17.chr17_random 639793 143 + 2618010 ggtgggggtaggggtgggcttgggggtggggatggggatgggAGCCGCCAATGCAAACTGGCCCCTGGCTGGTTTCCTACCCTGCACCCTGCCATGCAAG--------TCCTACCCCTACCCCTACCCCTGTCTGCCCCACCTCCACCCCT s panTro1.chr19_random 41324771 146 + 57627672 ggtaggggtaggggtgggtttgggggtgggaagggcgatgggagCAGCCACTGCAAAGCAGTCCCTGGCTGGCTTCCTGCCCCACACCCTGCCATGCGAGGCCTCTCCTCCCGCCCCCAGCCCTGCCCCT-----CACCACCTCCACCCCT s canFam1.chr5 46599749 54 - 92064832 -----------------------------------------------------------GGCCCCCGCCCG------TCCTCAGCGCCCTG-----------------------------CCCTGCCCCA-GGGGACCCGCGGCCGGCT-- a score=2208.0 s hg17.chr17_random 639936 36 + 2618010 AGGCTGCCCCACACCCAGGCTCCAGAAGTCTCCCAG s panTro1.chr19 32893045 36 - 82489036 AGGTTGCCCCAGACCCAGGCTCCAGAAGTCTCCCAG s canFam1.chr5 46599803 27 - 92064832 GGGCTGTCGGCCAGTTGGGCTCC-----CCGC---- a score=87105.0 s hg17.chr17_random 639972 655 + 2618010 GATCCAGGAACTAAGGGCAGCCTCTGGGTTCCATAGCCCCTAGTCCATGAGTCAGCCACCCCTCTGCGTGCTGACAAACCTTGGCTCTCATGCCCCACCCCAAGCCAAGCACACAGCCCTGTCCCCCCACCAGCATTATCACCGCCTCCTGATTTTGGCCCTGACAGCCCT-GCTTCCTGGTAACCTTGCCCCCTCCCACCCTGCTCCAGGCTAGCCCAAAGGCCAG-GCCCTCCACCCACACTTCCTGGGGGCCACTCTACTATCTCCTTGCCCAGATGTCTTAACCTGGCTTTACCAAGATAGAATAAATA--ACAGGGATGAGGCCCCGGACC-CCGCCAGGAAGATGTGCCAAAATACCCTCCATTTAGAAGCGGGAACAGTGTTGG--GGCCTATGGATGACCCCAG-----GATTGTCACCCAAGCAGCAAGAAGGGCAAGGAGCCCGGTTTCCTGCCCTTACCTGGGGAGGACGTGGCCAGGGCT----------CCAAAAGGCCCTGGAGAGGGGTGGGCAGGAGAGCAGATCCACCCTCCTCTTGAGGAAGCA-GCCACCATCCCCAGGAAG-AGCAGATGGGGGCACACAGGCAGAGTCCCCACGTGCTGTAGAGCAGGGCCAGCAGAACTGTACTCAGCCTCAGCCCC-AGGGGAGCTGCAAGAT-------AGAC------- s panTro1.chr19 32893081 656 - 82489036 GATCCAGGAACTAAGGGCAGCCACTGGGTTCCACAGCCCCTAGTCCATGAGTCAGCCACCCCTCTGCGAGCTGACAAACTTTGGCTCTCATGCCCCGCCCCAAGCCAGCCACACACCCCTGTCCCCCCACCAGCATTATTACTGCCTTCTGATTTTAGCCCTGACAGCCCT-GCTTCCTGGTAACCTTGCCCCCTCCCACCATGGTCCAGGCAAGCCCAAAGGCCAGCGCTCTCCACCCACCCTTCCTGGGGGCCACTCTACTATCTCCTTGCCCAGATGTCTTAACATGGCTTTACCTAGATAGAATAAATA--ACAGGGATGAGGCCCCAGACT-CTGCCAGGAAGATTTGCTAAAATGCTCTTTGTTTAGAAGCAGGAACAGTGATGG--GGCCTATGGATGACCCCAG-----GATTGTCACCCAAGCAGCAAGAAGGGCAAGGAGCCCGGTTTCCTGCCCTTACCCAGGGAGGACATGGCCAGGGCT----------CCACAAGGCCTTGGAGAGGGGTGGGCAGGAGAGCAGATCCACCCTCCTCTTGAGGAAGCA-GCCACCACCCCCAGGAAG-AGCAGATGGGGGCACACAGGCAGAGCCCCCGCGTGCTGTAGAGCAGGGCCAGCAGATCTGTACTCAGCCTCAGCCCC-AGGGGAGCTGCAAGAT-------AGAC------- s mm5.chr11 60888945 554 - 121648857 GGTCCAGGAGCCCAGCGC----------TTCTACAGCCAC---CCCAGGACT----TGCCCTTCTGAGCGCCCCTGAACA--GGTTTTCACG-----------GCCGGGCTCAC---------------------TTCTCCCCGCACCCCGAAACCATC-----CAGCCCTCGCCCCGGGGTAACCCGCTTCCCGATCTCCT--CTCAAAGCTGAAGCAAGAACCTG------ACACCCACCCTT-------------------TCTTCTGGCCCCACTGTTTGAACCTGATTTCATTAAGGTGCTAT----------GGGATG-TGCCCCAGGCC-ACGCCGGTGGGCT----CAGAGTGTGTCCACCCTGGATGCAGGGGTAGTGGTGGATAGCGGAGGGGAGAGTACTGCTGGTGATTGTC---------------AGGGAAGGAAGCCTGGCTTTCCATACTTAC----GGTGGGCGTGGGGAGAGTTTGCTTGTGACCCACGTGGCCCGGCA----GGCTGGCTGGGTAGTGGCTCTCCTCTACGCCTGAGGAAGGAGGCCAAGGCCACCAAGAAACAGCAGAAGATGGCGCAGAGGCAGACCCCCAGTGTGCAGTAG---AGAGTCAGCTGGTCGCTACTTAGCCTCAATCCT-GTGGGTGTTTCAGGAT-------AAGC------- s canFam1.chr5 46599830 581 - 92064832 GGTCAGCGGACTGCCGGC----------TCGCCCACTCCCCAGC------GCCAGCTGCCTTTCT----GCTGGGAAGGAACAGGTTTCGCCCCTTG------GCCGACCACCC---CTAGGCCCCCCAGGGGGA---CCACCTCCTCCAGGTTTCAGCCCGGA-AGCCCT-G-------------------------------TGCGGGGCCAAGCCGGCGGCCGGCAGCCCACATCCACGCT--------------------TCCTCAGGTCTTGATGT---GAACTGATCTCACC-AGACAGAAAAAGTACTGCAGGGATG-TGCCCCAGGCCTTTGTCAGGAAGGGCTGGCAAACTGCTGTCCTTTTGGAAGCAGGGCCAGTGCCAG--GACAGAAGGCCGACCAGCA-----GATTGTCCCACAGGCCCCGGGA--GTCTGAGGGCCCGAT---CTGTGCTCACCCTTGGAGGACTTGGCCTGGGTC----------CGGCATGGTGCTGGTGAG-GGCTGGCAAGAGAATTGGTCCCCTCTCCTCTTGAGGAAGCAGGCCACCGCCAGGATGAAGCAGCAGATGATGGCACAGAGGCAGAGCCCCAGAGTGCTGTAGACCAGGGCCAACTGTTCGGTGCTCAGCTTCAGCCCTGAGGGGTGCCACAAAGCTCCCGTGAGGCACGAGAT a score=208.0 s hg17.chr17_random 640627 14 + 2618010 TGAGA----------CCCTCACAg-- s panTro1.chr19 32893737 14 - 82489036 TGAGA----------CCCTCACAg-- s canFam1.chr5 46600411 26 - 92064832 TGGGAGGGGCTCTCCACCACCCAGGG a score=30264.0 s hg17.chr17_random 640641 339 + 2618010 gttgggctctgtgtccccaccgaaatctcatctggaattgtaatcctcctgtgtcaagggagaaacctggtgggaggggatgggatctggggacagtttcccccctgctgctcccctgatagtgagggagttctcaggagagctgatggtttgaaagtgtggcacttcctgcttctccgctcactccctcctgccgccttgtggagaaggtgcctgcttccccttcgccttctgccatgactgtaagttccctgaactgggagtcgattaaacctctttcctttataaattacctaggctcaagtatttctttatagcagtgtgaaaacaaactaatac s panTro1.chr19 32893751 339 - 82489036 gttgggctctgtgtccccacccaaatctcatctggacttgtaatcctcgtgtgtcaagggaggaacctggtgggaggggatgggatctgggaacagtttcccccctgctgctcccctgatagtgagggagttctcaggagagctgatggtttgaaagtgtggcacttcctggttctccactcactccttcctaccaccttgtggagaaggtgcctgcttccccttcaccttctgccatgactgtaagttccctgaactgggagtcaattaaacctctttcctttataaattacctagtctcaagtatttctttatagcagtgtgaaaacaaactaatac a score=13787.0 s hg17.chr17_random 640980 144 + 2618010 CCCTTCCCTGA--GGCGCCTTCTCCTTAGGCAACCCGCTGCCCCCATGCTCCTCCTCT-------------GCCCCCTGTC------CTTTCTTTTCCCCTCATGAGGCCCAAGTGATAAACGGGGccagcc---ccagtcccagccccagcccc------------agccc-cagcccca s panTro1.chr19 32894090 126 - 82489036 CCCTTCCCTGA--GGTGCCTTCTCCTTAGGCAACCAGCTGCCCCCATGCTCCTCCTCT-------------GCCCCCTGTT------CTTTCTTTTGTGCTCATGAGGCCCAAGTGATAAACAGGG---------------------ccagcccc------------agccc-cagcccca s mm5.chr11 60889530 144 - 121648857 CCCCTTCTGGAACGGTGCCTTAT--TTAGGCCTGTAGCTACATGTACCCTCCTCCATTCCAGGACTAAGTGGCCTCCTTACCATAGGCTTTCTTTTCACCTCATTAGGCCCAAGTAATCCACACAGCCATCC---CCAGG-------TCCGCCTC------------A------------- s canFam1.chr5 46600437 132 - 92064832 CCCTTCTCTGA--AGTG---TCCCTGCAGGCTAGCAGC---------------CCCTT-------------GTCCTGCAAT------CTTTCTTTTC-CCTCATTGAGCCCAAGCAAGCCACATGGCCGTCCCATCCA---------CCTGCCCCCTTGGAGGGCAGAGCCCTCAGCCCCA a score=3956.0 s hg17.chr17_random 641124 71 + 2618010 TCCTACTGCAGGCCTGTG-TGGCTGCTGGAGAGGCCGTGTTCCTTTCCTCTCCCCGAGCCTGCCTGATATG-----C s panTro1.chr19 32894216 71 - 82489036 TCCTACTGCAGGCCTGTG-TGGCTGCTGGAGAGGCTGGGCTCCTTTCCTCACCCCGAGGGTGCCTGATATG-----C s mm5.chr11 60889674 45 - 121648857 -------------------------CTGATGACGTGGGATTCCTTTTCTAGCCCCAAGAC--ACTGCTATG-----C s canFam1.chr5 46600569 74 - 92064832 GCATGCTGTCCACCTGTC-TGGCTCCTGGAGAAGTTG-ATTCCCGGCCTCA-CTCAGGCTTGCCTGGTGTGGACCCT s danRer1.chrNA 232255142 72 + 390413307 TCCACCTAGGGGCCTCTGACCCCAGCAAGCAACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTATAGG-----C a score=25898.0 s hg17.chr17_random 641195 195 + 2618010 TTTCTGGATCCTGGAGGAAACTGACCCCCTAT-TCTCATACTGGTG-CAACATCTTCCAAGACCTCAAAGCTGTACCATT-------TGAGCCAGTCTTTT-TTCTTATCTCCACTTGC---TAGGGCTGTCATTGGGACAGTCCTAGAGGGTGGTGCCAATGGATGA----ATGGATGGATGGACAGT--AGTCCAGGGATGATGTCCCTGTC s panTro1.chr19 32894287 200 - 82489036 TCTTTGGATTCTGGAGGAAACTGACCACCTAT-TCTCATACTGGTG-CAACATCTTCCAAGACCTCAAAGCTGGAAAACA-------TGAGCCAGTCTTTTCTTCTTGTCTCCACTTGC---TAGGGCTGTCATTGGGACAGTCCTAGAGGGTGGTGCCAATGGATGAATGCATGGATGGATGGACAGT--AGTCCAGGGATGATGTCCCTGTC s mm5.chr11 60889719 175 - 121648857 TTTCTG---------AGGTATTGGCCC---------CAGACTGATGACACCTTTCCCCAAGACCTTAAAGCTGGACACCTCTGGCGCTGGCCCATTCTGTT-------TCTCCACATGC---TTTGGAGGC-----AGACAAACCCAG-GGATGG-----ATGGATGCATGCATGCATGTATGCATGCTTGTGTCCCGGGAGGGTGACTCCACC s canFam1.chr5 46600643 188 - 92064832 TCTCTAGACTCTGGAGACAATCAGCCCCCTCTACCCCAGGCTGGTAGCAACTTCTTCTAAGAGCTCAGAGCTGGACACCTCTGGAGCTGGCTCTGTGTGCC------ATCTGCTCTTTCCCATAGGACCTAGATCGGGCCAGTACCAG-AGGTGG-----ATGGATAA--------GTGAAGAGACAAT--AGTCCTGGGCAGATGACTC---- a score=8945.0 s hg17.chr17_random 641390 49 + 2618010 TGTCCTGAACCGGGCCCTTCCTCCAATGAGAAGCCTTCCTGAGTGAGTA s panTro1.chr19 32894487 49 - 82489036 TGTCCTGAACTGGGCCCTTCCTCCAATGAGAAGCCTTCCTGAGTGAGTT s canFam1.chr5 46600831 48 - 92064832 TGCCCTGACCTGGG-CCTTCCTCCAAGAGGTGGCCTTCCTGGGGAAGCA a score=26757.0 s hg17.chr17_random 641439 343 + 2618010 TATAcagtcatcccttggtatccatggaggattagttctagggtccccgggaatgccaaaatccatggatgctcaagtctctgatagaacatggcctagtatttacgtataagctatgcgcatcctcccgtatacgttagaccgttactaga----ttatgatgtgtaatacaatgcagatgctacataaatggtcgtgatactgtattctttagggaatgatgacaagaacaaagtctgcacatgttcaatagaaacataaccatccaatttattttctgaatattttccatctgctgtt-gccgaatctatagatgcagagctcc-----tggatacgagagccaagtgTG s panTro1.chr19 32894536 347 - 82489036 TATAcagtcatcccttggtatccatggaggattagttctagggtccccggggatgccaaaatccatggatactcaagtctctgatataacatggcctagtgtttacatataacctatgcacatcctcccgtatatattagaccattgctagattatttatgatacgtaatacaatgcagatgctacataaatggttgtgatactgtattgtttagggaatgatgacaagaacaaagtctgcacatgttcaatagaaacataaccgtccaatttattttctgaacattttccatctgctgttggctgaatc------cgcagagctccctccacagatatgagagccaagtgTG a score=32796.0 s hg17.chr17_random 641782 240 + 2618010 CTTTGAGAGTAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGCAGGTGTTGATCAGGAGGGCCC---TGCACTGGGGCATCTGGACGTCCTGCCTC---AGGACTTGAGACTCCAG-TTGGATGGCACAGACAGACTCAGCCCAGGTCAAAGCCGTCCCCTTGAAGTTTCATTTTATCCCAAGCTCTTTCTGGACCCTGGAATT-TGGCATCCCCTAGGCCCTGCGTGGAAGGACAGATGA------------ACCAG s panTro1.chr19 32894883 250 - 82489036 CTTTGAGAGCAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGCAGGTGTCGATCAGGAGGGCCC---TGCATTGGGGCATCTGGACACCCTGTCTC---AGGACTTGAGACACCAT-TTGGATGGCACAGGCAGACTCAGTCCAGGTCAAAGCCCTCCCCTTGGATGTTCATTTTATCCCAAGCTCTTTCTGGACCCTGGAATT-TGGCATCCCCTAGGCCCTGGGTGCACGGACTTATGAGCGAGAAATTACACC-- s canFam1.chr5 46600881 220 - 92064832 CTTCGAGAGTGGGACAGGTCCAGTTGCTAATGAATCTGGGATAGCA------AACCAGGAGGGCCCAGGAGAACTGGGGTG-CTGGTCACCCCACTTCTCAGGGTCTTGAGCCTCTGGTTTGGATGCCAGAGGAAGACTCAGCTC----CAAAGCCCTCCCCTTGAAATTT-----------------TTCCTGGCCCCTGGAATCAGGGCACCCCCTAGGCCCCAGGTGGAAGGACAGATGG------------GCCAG a score=15341.0 s hg17.chr17_random 642022 228 + 2618010 GTTTTAGATAACATGTCTAGAAGAGTGAGCCCCTACTGTGTGCTCGGCACTTTCCCCACAGGATCCTCTAGCTAGAATATCCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCAGAAATGAAAAAGCGATACCATTAGATACACTAAAAAGACCATT---------------------AGGTAATAGTATTAGCTTTTGTATTCTGAGATCCAACAGCAGCAGTCACT-TCCCTCCACCCCTATGT s panTro1.chr19 32895133 238 - 82489036 ----------ACACGTCTAGAAGAGTGACCCCCTACTGTGTGCCCGGCACTTTCCCCACAGGATCCTCTAGCTAAAATATCCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCACAAACGAAAAAGAGATACAATTAGAGACACTAAAAAGACCATTAGGGACACTAAAAAGAACATAAGGTAATAGAACTAGTATTTGTATTCTGAGATCC-ACAGCAGCAATCACTCCCCCTCCA-CCCTATGT a score=11360.0 s hg17.chr17_random 642250 120 + 2618010 GTATCCCAGGACCACCCTGGGCGGGGAGGGCTGAGGTTAGGGAGCAGCCATGGATGCTCTGATGCTGGCCCTGGGCCTCGGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGG s panTro1.chr19_random 41327492 120 + 57627672 GTATCCCAGGACCACCCCGGGCAGGGAGGGCTGAGGTTAGGGAGCAGCCATGGATGCTCTGATGCTGGCCCTGGGCCTCGGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGG a score=4004.0 s hg17.chr17_random 642370 32 + 2618010 GGCAGCCGGGCCTGGCCAGAGAAGCAACACAC s panTro1.chr19_random 41327612 32 + 57627672 GGCAGCCGGGCCTGGCCAGAGAAGCAACACAC s rn3.chr2 218745659 32 - 258222147 GACAGACAGACGAGACAGAGGCATGAATGCAC a score=16185.0 s hg17.chr17_random 642402 54 + 2618010 ATGTGCACAGACATGTTTACCCACATACACGTGTGCACGCACGTGCACAAACAC s panTro1.chr19_random 41327644 54 + 57627672 ACGTGCACAGACGTGTTTAGCCACATACACGTGTGCACGCACGTGCACAAACAC s mm5.chr10 39573640 54 - 130633972 ATGCATATTTATATGTGTGCCCACACACAAGTGTGTGCGCACACACACAAAGAC s rn3.chr2 218745691 54 - 258222147 ACATGCACAGACACATGTACCCATAGACACACGAGCACTCATGTGTGCAAACAC a score=3010.0 s hg17.chr17_random 642456 15 + 2618010 GTTGCAAGCAGGCAT s panTro1.chr19_random 41327698 15 + 57627672 ATTGCAGGCAGGCAT s mm5.chr10 39573694 15 - 130633972 ATTATAAGCAGACAT a score=11808.0 s hg17.chr17_random 642471 135 + 2618010 GTTGACGCCTCAGGCAGCGGAGGACCCTGACTCTGGGCGCTGCTGACCCGGGCAAGGCCCCACTGTGATTCGTGCCATGACCTCAGAATGTCACTGGTGCTTAGCACCTATCTGCTCTCTGGCCTGCGTCAGTGG s panTro1.chr19_random 41327713 135 + 57627672 GTTGACGCCTCAGGCAGTGGAGGACCCTGACTCTGGGCGCTGCTGACCCGGGCAAGGCCCCACTGTGATGCGTGCCATGACCTCAGAATGTCACTGGTGCTTAACACCTATCCGCGCTCTGGCCTGCCTCAGTGT a score=20377.0 s hg17.chr17_random 642606 193 + 2618010 TCTACAGCAGTTACACACAGGCAGTGGTATCTGTGAGCAGCTCTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATGA-----CCCAGGCCAGCTGATTCA--TC---AGAATCAGGTGAGCGTGACCTGCTCTCTTCCCTCCAGGCGGACT--TGGGGACAGTGGCTAC--GGTGCGGGCGGTGTTGGCCTCTGTGGGGCAGCTAC s panTro1.chr19_random 41327848 193 + 57627672 TCTACAGCAGTTACACACAGGCAGTGGTATCTGTGAGCAGCTCTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATGA-----CCCAGGCCAGCTGATTCA--TC---AGAATCAGGTGAGCGTGACCTGCTCTCTTCCCTCCAGGCGGACT--TGGGGACAGTGGCTAC--GGTGCGGGCGGTGTTGGCCTCTGTGGGGCAGCTAC s danRer1.chrNA 154481145 189 - 390413307 TCTACTGCAAGTCCAGGGAGAGAGGTGGACCTCCAGGTAGCTTACTGGGATCAGAGGCCTCTAGGTGGAGGGCCATGAGGCACCCTGGGGCCTCTACTGCAAGTCCAGGGAAAGAGGTGGA-----------------CCCCCAAGTAGCTTACTGGGGTCAGAGGCCCCTAGGTGTAGG-GCCATGAGGCACCCTGGGGCCTCTAC a score=26822.0 s hg17.chr17_random 642799 281 + 2618010 CGAGGAGGGTCATCCCtgagcactcaccaggcgcccgttctacactgcccgtgtagacgattggctctttcgtctccatggtggcttcgtagagtgggtgctgttcccaaatgtccccattcgacagatgagacgtctggggtcagagaggcagtaaccggcctgggaatccggacatgaccctgagttttgctctcagccctgccgtgtgctgtgctggaattcaggcctgaaccctgtgacctccctgccctagatcccaaatctgCCCAGGTTTCCCA s panTro1.chr19_random 41328041 281 + 57627672 CGAGGAGGGTCATCCCTGAGCACTCACCAGGCGCCCGTTCTACACTGCCCGTGTAGACGATTGGCTCTTTCGTCTCCATGGTGGCTTCGTAGAGTGGGTGCTGTTCCCAAATGTCCCCATTCGACAGATGAGACGTCTGGGGTCAGAGAGGCAGTAACCGGCCTGGGAATCCGGACATGACCCTGAGTTTTGCTCTCAGCCCTGCCGTGTGCTGTGCTGGAATTCAGGCCTGAACCCTGTGACCTCCCTGCCCTAGATCCCAAATCTGCCCAGGTTTCCGA a score=23493.0 s hg17.chr17_random 643080 256 + 2618010 TCCCGATGGGGCAGAG----CCTGGTCCTGGCAGAGCCACTGGTA---TAGAGCCACTGGTACAGATCCACTG--------------ACGGTCCTCAGAACACCTCTGT----------GCCCTAAGCTGG-GTCCTGATGGTCGCTGTGGGCCCCAC------------TGAACACACATGGTCCCTTGTCCGGGGGAGCCTGCTG-----------------------------------CCCTTGGGCAGCTGT-----------GGAAAATGAAGGAGCCCTGGAGGGCTGGCTGAGGGGAGACTATCTTCCCTTGTGTTCAAAGGGGTCCGGGCACTAGGG s panTro1.chr19_random 41328322 270 + 57627672 TCCCGATGGGGCAGAG----CCTGGTCCTGGCAGAGCCACTGGTA---TAGATCCACTGGTATAGATCCACTGGTATAGATCCACTGACGGTCCTCAGAACACCTCTGT----------GCCCTAAGCTGG-GTCCCGATGGTCGCTGTGGGCCCCAC------------TGAACACACATGGTCCCTTGTCCGGGGGAGCCTGCTG-----------------------------------CCCTTGGGCAGCTGT-----------GGAAAATGAAGGAGCCCTGGAGGGCTGGCTGAGGGGAGACTATCTTCCCTTCTGTTCAAAGGGGTCCGGGCACTAGGG s danRer1.chrNA 154481371 323 - 390413307 TCCTGCT--GTCAGAGGCCCCTTGGT----GGAGGGCCAGGGGCACCCTAGGGCCTCTACTGCAAGTCTAGGGAGAGAG--------GTGGACCCCAGGGTAGCTTGCTGGGGTCAGAGGCCATAAGGTGGAGGCCAAGGGGGCACCCTGGGGCCTATACCGCAAGTCTATGGAGAGAGGTGGACCCCT-----GGGTAGCTTGCTGGGGTCATAGGCCCCTAGGTGAAGGGCCAGGGGGCACCCTAGTGCCTCTACTGCAAGTCCAGGGAGAGAGGTGGACCCCTGGGTAGCTTGCTGAGGTGAGAGGCCCCTAGGTGAAGTGCCAGGGGGC----ACCCTAGGG a score=83379.0 s hg17.chr17_random 643336 908 + 2618010 TTCTCCCCAGGTATTTCTTGCTCTGCGTGGTCCTCTTGAGGCCTCGCCCTCCTTTTGCCTCGAGTATTCCCAGGAGGGACGGTCCATCCAGCTGTTCTCCAGGACCAAGGACCCACTGTTCTTCCTCAGTGACCCAGGAAAATGAAGCCTCCTCCTGTTGGGACGGCTCAGAATGGTGGACTCCACAGTCCCTCCGCGAGAGACGTGGTTTCCATGCGTACAATAGATCTTCCTCATCCCCCAAACCCAACACCCTCCTGCTCAACAGGCGTTATTCCTAAAGTGGCTTCACTGTTCAGACTGAAGAGCCACGGTAGCCAAAGTGATGAGCGGAGTAGAACCGAGCAGTCGGGAGAGATCTTGTTCCCTGTAGGAAACTGGGCATCGCTGAGGCCCTGAGCATCCCAGGAGGCCGATTGCACAGAGACCTCTGGTCGCTGACCCCAGTCTGCCTCCACATCCCTGGAATAGCCCATCATGGGCCCTTCACCCTTGGCAGGTGGAAACCATTCAACCTGCTGGGGCCGGTGTGTCCCCATTTCATGGCATTGGGGGACAACAGGATTCTCTGTCTAGGTCCCACTGTACTCAAGTCCTTGGGAAGATGCCCACCCCTGCTTGGGACTTGAGACTCCAGAGACTGGAGCAGCTGTGGGCCACTGGGTCTGGCCCCTTTTTCCCT-GGGGGCGGCGGTGGAATGGGGGTTACGCAGCCAGCCAGCATCTGGGAGCCCGGCGAGAGCGGTTCAGGTGTT-CTCCGAAGCCGCCGC-GTACAGTGTGACCTTTAGACAATTCTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGTAGTTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACGAAAAGGTACAAGTCGGTCTGCTTCTTGGAGGGAGGC s panTro1.chr19_random 41328592 911 + 57627672 TTCTCCCCAGGCATTTCTTGCTCTGTGTGGTCCTCTTGAGGCCTCGCCCTCCTTTTGCCTCGAGTATTCCCAGGAGGGACGGTCCATCCAGGTGTTCTCCAGGACCAAGGACCCACTGTTCTTCCTCAGTGACCCAGGAAAATGAAGCCTCCTCCTGCTGGGACGGCTCAGAATGGTGGACTCCACAGTCCCTCCGCGAGAGACGTGGTTTCCATGCGTACAATAGATCTTTCTCATCCCCCAAACCCAACACCCTCCTGCTCAACAGGCGTTATTCCTAAAGTGGCTTCACTGTTCAGACTGAAGAGCCACGGTAGCCAAAGTGATGAGCGGAGTAGAACCGAGCAGTCAGGAGAGATCTTGTTCCCTGTAGGAAACTGGGCATCTCTGAGGCCCTGAGCATCCCAGGAGGCCGATTGCACAGAGACCTCTGGTCGCTGACCCCAGTCTGCCTCCACATCCCTGGAATAGCCCATCATGGGCCCTTCACCCTTGGCAGGTGGAAACCATTCAACCTGCTGGGGCCGGTGTGTCCCCATTTCATGGCATTGGGGGACAACAGGATTCTCTGTCTAGGTCCCACTGTACTCAAGTCCTTGGGAAGATGCCCACCCCTGCTTGGGACTTGAGACTCCAGAGACTCGAGCGGCTGTGGGCCACTGGGTCTGGCCCCTTTTTACCTCGGGGGCGGCGGTGGAATGGGGGTTACGCAGCCAGCCAGCATCTGGGAGCCCGACGAGAGCGGTTCAGGTGTTACTCCGAAGCCGCCGCAGTACAGTGTAACCTTTAGACAATTTTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGTAGCTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACAAAAAGGTACAAGTCAGTCTGCTTCTTGGAGGGAGGG a score=76601.0 s hg17.chr17_random 644244 731 + 2618010 CTCTTCCAGTGTGCCCTGGTCAAAGGGTCCTGGGCTCCCTAGGAGCACAGGGCAGGGACGGGTGGCCA--ATGCCCCCAGGCCCTTGCAACCCTTTACCTTGG---------ACCCCT--CACCAAGGCTCCCTCTGGGCTACAGGGACACCGAGCTGGGCTGCCAGAGGA----CAAGGGGCCTAAGCCTTTTCGAAGCTACAACAACAACGTCGATCATTTGGGGATTGTACAGTGAGTCCTCTGCACTCCCCTCACCCCTAAAGCACCTGTCTCAGCTCAGGAATGGG---TTTGCTTTTAGAAAGGCCTTTCT-GACGCAGGACATGTCTCACCAGGTCGGGTCAACCTCCTTTCCAGGGACAGAACTCCTCCCTGACTCCCCTGCAGGTCCAGCCCGAG---GTTGTTAGGCCAGAGGTGTGGGGCCCAT--------CTA-GGGAGCCGGTGGGAATGGAGACTGGGC--TAGGTCAGGCCCCTGGGCGCTCAGCAGTTCTGTCGGCAAGTGAGCACAAGAGGAGC---GGGGCAGCCTGAGGGTCTGGCCCTGTCTACTTGGA-GACAACCCCGGTGAGATGCAAGGGTTATGGCCACAGGGTGAGGGGACGCCTGGCCCAGCCTCAGGGCTGTTGTCCAGCAGGTC--TCTGA---GGGCCCACCTGCCCCTGTTCTCCCCCATT----CCCCTAGAGCTACAGCCCTCACTGTCCC----------GTGAG-----GGGAA----------AAGGCATGGTGA-CAATGGGGGCTGTAGCCCTAGGAGAACG--------------------GGGG s panTro1.chr19_random 41329503 734 + 57627672 CTCTTCCAGTGTGCCCTGGTCAAAGGGTCCTGGGCTCGCTAGAAGCACAGGGCAGGGACGGGTGGCCA--ATGCCCCCAGGCCCTTGC-ACCCTTTACCTTGG---------ACCCCT--CACCAAGGCTCCCTCTGGGCTACAGGGACACCAAGCTGGGCTGTCAGAGGA----CAAGGGGCCTAAGACTTTTCGAAGCTACAACAGCAACGTCGATCATTTGGGGATTGTACAGTGAGTCCTCTGCACTCCCCTCACCCCTAAAGCACCTGTCTCAGCTCAGGGATGGG---TTTGCTTTTAGAAAGGCCTTTCT-GATGCAGGACATGTCTCACCAGGTCGGGTCAACCTCCTTTCCAGGGACAGAACCCCTCCCTGACTCCCCTGCAGGTCCAGCCCGAGGTTGTTGTTAGGCCAGAGGTGTGGGGCCCAT--------CTATGGGAGCCGGTGGGAATGGAGACTGGGC--TAGGTCAGGCCCCTGGGCGCTCAGCAGTTCTGTCGGCAAGTGAGCACAAGAGGAGC---GGGGCAGCCTGAGGGTCTGGCCCTGTCTACTTGGA-GACAACCCCGGTGAGATCCAAGGGTTATGGCCACAGGGTGAGGGGATGCCTGGCCCAGCCTCAGGGCTGTTGTCCAGCAGGTC--TCTGA---GGGCCCACCTGCCCCTGTTCTCCCCCATT----CCCCTAGAGCTACAGCCCTCACTGTCCC----------GTGAG-----GGGAA----------AAGGCATGGTGA-CAATGGGGGCTGTAGCCCTAGGAGAATG--------------------GGGG s canFam1.chr27 10772064 749 - 49087461 CTCTCATGCTATACCATTTTCAGAGGGTCCTGGGCTCCCTCAGGATTCAGGGGAGTGA---GGAGCCATTCTGCTCCC---TCTTTTC-ACCTATGTCCTTGGCTCTGAGGTATCCCTGCTGTGGGGGCCCCCTCT--GTTTCAGGCACACCAAGCAGGGTCTCCAGTGGAACCTCAGGAAGATGCTGACCTCTCGCTGT----GCAGGGTCACTGACCATCATGGTTTTCTGCAGTGAGTCATCTAGACACCCCT--------------TCATCACATCTCAGGGGGGTGGTCTCCACTTACAGGAATGCCTCTCTGGAGGCAGGACCCATCTCACCAGGTCAGGCCCTCATCC--------------------CCTGGAGCCCGCTGAGG-----GCCAGAGTCTG-TGCTAGCCTAGGGCTGCGAGACCCAGGAGGCAAACCC-GGAAGTGGGCAGGAATAGAG-CTGGGCCTTGGGCCGGGCACCTCTACACTCAGAGGT-----------GTGGCCTCAAGGCCTGCTTTGGGGAGGGCCATATGTGT-GCCTTCTGTACTCAGAGGGTGGATCCAGTCAGTTCAGCAGGCT----CCAGAGGGTGAGGGGCT--CTGGGACA---TGACGTCCTTTCTGTAGGAGGACAGTCTGGTCTGGAGCAAGATGGGACTGATGCTCCCCACTGACACCCTCAAGGCAAGGGCCTCCATAGCTCCAAAGGCTTCTGTGGGACTGCAGGAAGTTCAGCTATAAGACAAGGTCAGGGAGGGAGGGTGCAGAGCAGAGGGAAGGGACAACCAGCATGGACAGGAGGAG a score=30326.0 s hg17.chr17_random 644975 484 + 2618010 AGAAGATGGGCAGGGCCCCGTTCTGGG-------CATCTCACGGTG---AGGCCAGGGAGGCAGCAGGGCTCGCGGCTAAAGA-CCTGGG-TCTGGTGCTGGGA-AGGGATCT----GGGGCCGGG----TAAGAGGAGCC----------CAGCCAGGA------------GCCCATCCCTCAGGGATCA--------CAGGATGGAGAGACAGAGG------ATCCCTGGGGA----G--------------------------GTAGGGCGGGAGGGAGCTGACGAGCCGTGCCACTTCTGAAAC------------------------GCAGGGTGTGTGGC-----------TCGGGTGCAGGG---AGAGGCAGG-TGGATGCTGGGAGGTCAGAACCTGCAAGGG-----CCTTGGGGCTGTCAAGTGGGGTGGGCCCCTGG---------TGCAGCCAGAGTACACCGGGCAGGTCTCAGGGCAGGCTCCCTTGACCCTGG----------CGGGGGGATGTGGTCACTCCCTGAGGGACTCCTGTCAGGGCCCGGTCGCCCACCCTGGGCGGCCCCCATCCCATCT--CAGGGCTAACCTTTCTCAG-CTCCAGCAGAAAGCACCACC s panTro1.chr19_random 41330237 485 + 57627672 AGAAGATGGGCAGGGCCCCGTTCTGGG-------CATCTCACGGTG---AGGCCAGGGAGGCAGCAGGGCTTGTGGCTAAAGACCCTGGG-TCTGGTGCTGGGA-AGGGATCT----GGGGCCGGG----TAAGAGGAGCC----------CAGCCAGGA------------GCCCAGCCCTCAGGGATCA--------CAGGATGGAGAGACAGAGG------ATCCCTGGGGA----G--------------------------GTAGGGTGGGAGGGAGCTGATGAGCCGTGCCACTTCTGAAAC------------------------GCAGGGTGTGTGGC-----------TAGGGTGCAGGG---AGAGGCAGG-TAGATGCTGGGAGGTCAGAACCTGCAAGGG-----CCTTGGGGCTGTCAAGTGGGATGGGCCCCTGG---------TGCACCCAGAGTACACCGGGCAGGTCTCAGGGCAGGCTCCCTTGACCCTGG----------CGGGGTGATGTGGTCACTCCCTGAGGGACTCCTGTCAGGGCCCGGTCGCCCACCCTGGGCGGCCCCCATCCCATCT--CAGGGCTAACCTTTCTCAG-CTCCAGCAGAAAGCACCACC s canFam1.chr27 10772813 526 - 49087461 GGAAGAAGGGGAAGAGTCTGCCCTGGGGAGGGCACATGGGACGGTGGATAGAACAGTG-GGAGGGAGGGAAGGTGGCT------GCTGGG--CTGATGCAACCACAAGAACCTCACAGAGGCTGGAGACTTGATAGAGGCCAACTGGGCTGCTCCCAGGACCCTTGGTCACTGCTCACCACCCAGGGACAAGTGTCCATTTGGATGG---GCCAGGGGTGTGTCATGCTCAGGAATTCTG--------------------------ACAAGACAAGGGGTAACAGAGATGTCCTGACA----TAAAACAAGGGTGAAGTCACAGCACACACAGCAGGGATGATGGC------------AGGTTGCAGGG---AGAGGCAGGCTGGACACTAGACACTGAGGCCCTGTGAAGG------TGTGGGGACATC-AGCTGGACGATCACAGGG---------TGCAACCAGTCTATACT-GACAGCTCTCA-GGCTGGCGC-----ACTCTAG----------GACAGTGACA-GGTCACCTCCTG-GGGATGGCTGTGG-------------------GGGCGCCTCCTACCCCACTTGCCAGCAACAAACTTTCTCAGACTCCCACACAGAATGCTGCC s danRer1.chrNA 210940697 496 + 390413307 AGGTGGAGGGCAAGGGAGCACCCTGGG-------GCCTCCACTGCA---AGTCCAGGGAGAGAGGTGGACCCGTGGGTAGCTT-GCTGGGGTCT-----------AAGGCCCCTAG-GTGGAGGGG----TAAAAGG--------------CACCCTGGA------------GCCTATACCGCAAGTCCAG----------GGATAGA-----AATGG------ACCCCTGGGTA----GCTTGCTGTAGTCAGAGGCCCCTAGGTGTAGGGCCAGGGGGCACCCTGGGGCCTAACCT----GCAAGT------------------------CCAGGGAGTGAGGTGGACCCGTGGGTAGCTTGCTGGGGTCAGAGGCCCC-TAGGTGGAGGGCCAGGGGGCACCCTAAGGCCTATACTTTATGTCCAGGGAAAGAGGTAGACCCCTGGGTAGCTTGCTGGGGTCAGAGGCCCCTAGGTAGAAGGCC-AGGGGGCACCCTGGGGCCTATACTGCAAGTCCAGGGAGAGA-GGTGGACCCCTGGGTGGCT--TGCTGGGGTCGGAGGCCCTTAGGTGGAGGGCTATGGGGCACCCT--GGGGCCTATACT---------------------------- a score=-549.0 s hg17.chr17_random 645459 3 + 2618010 TCG-- s panTro1.chr19_random 41330722 3 + 57627672 TCG-- s danRer1.chrNA 210941193 3 + 390413307 --GCA a score=829.0 s hg17.chr17_random 645459 32 + 2618010 TCGAGTCCAGGACG---GGCAGCCCCACTGGGCAG s danRer1.chrNA 210941193 34 + 390413307 GCAAGTCCAGGGAGAGAGGTGGACCCA-TGGGTAG a score=4118.0 s hg17.chr17_random 645462 29 + 2618010 AGTCCAGGACG---GGCAGCCCCACTGGGCAG s panTro1.chr19 45758388 29 - 82489036 AGTCCAGGACG---GGCAGCCCCATGGGGCAG s danRer1.chrNA 210941196 31 + 390413307 AGTCCAGGGAGAGAGGTGGACCCAT-GGGTAG a score=20394.0 s hg17.chr17_random 645491 352 + 2618010 CCTGACCGCCCCCCACGCCAGGGGCCCCAGTAACCCCGGCCAGGCTGTCCCTACACTCCTTCTTCTCCCAGGTCCTGCCCCTCCTGGGAGTCAGCCCCACAGGAAGGCCCTTGTCCTCCCTTCCCTGTGCCTTCTCCTGGGCTGAG----CCCTGAGC---TGGAAAGGGA------CAGAGCCAGTCCT-----TTCTGGG-----GGTCGGCACCCAGG----CTGGGGCCGCTCCAGGCCCC---GTGCAGTTCCTCA--GCTCTGCCTGGGTTGCCT--------TACAGTGAGACGGAGCTGCCTCCTCTGACTGCGCGGGAGGCGAAGGTAAGAGCCTGATGCGTGGAGGGGCTGGTCCAGGGACGTAGGGACTGGGCGGGTGGTC s panTro1.chr19 45758417 352 - 82489036 CCTGACTGCCCCCCACGCCAGGGGCCGCAGTAACCCCGGCCAGGCTGTCCCTACGCTCCTTCTTCTCCCAGGTCCTGCCCCTCCTAGGAGTCAGCCCCACAGGAAGGCCCTTGTCCTCCCTTCCCTGTGCCTTCTCCTGGGCTGAG----CCCTGAGC---TGGAAAGGGA------CAGAGCCAGTCCT-----TTCTGGG-----GGTCGGCACCCAGG----CTGGGGCCGCTCCAGGCCCC---GTGCAGTTCCTCA--GCTCTGCCTGGGTTGCCT--------TACAGTGAGACGGAGCTGCCTCCTCTGACTGCGCGGGAGGCGAAGGTAAGAGCCTGATGCGTGGAGGGGCTGGTCCAGGGACGTAGGGACTGGGCGGGTGGTC s canFam1.chr27 10773339 229 - 49087461 CCTGGATGACCCACA-------GGCACCTGGAAGCC-------------------------------------CCTGCCCTCCCTGGG-GTCAGCC------------------CTCTTCTCCCAAGTG-----TCCTGGGCTAAG----ACTTG-----------------------TGGGCCAG-------------GGG-----GTCAGGGACCCAG-----------------------------------TCCTCAGGGCTCTGCTTCTCTTGCCT--------TCCAGGGAAAAGGAGCTGCCTGGCCCCAGCCCCCATGAGGCAAAGGTAATAGTCTGATCTGCTACAGGGCT-------GGATGTGGTCGCTGGACATGGGGCT s danRer1.chrNA 210941227 341 + 390413307 -CTTGCTG------GGGTCAGAGGCCCCTAGGTGTAGGGCCAGGGGGCACCCTGGGGCCT-----------ATACTGCAAGTTCAGGGAGAAAGGT-----GGA-----------------TCCCTGGGTAGCTTGCTGGGGTCAGAGGCCCCTAGGTGTAGGGCAAGGGAGCACCCTGGGGCCTGCACTGCAAGTCCAGGGAGAGAGGTGGATACCTGGGTAGCTTGCAGGGGTCTTAGGCCCCTAGGTGGAGCTCCAGG--GGGCACCCTGGGCTCTCTACTGCAAGTCCAGGCAGACAGGTGGACCC-------CTGGGTAGCTTGCTGGGGTCAGGGGCCCCTATGTGGAGGGCCAGGGCT--CACCCTGGGGCCTGTGCTGCAAGTC a score=0.0 s hg17.chr17_random 645843 7 + 2618010 AGTGAGG a score=573.0 s hg17.chr17_random 645843 2 + 2618010 AG s panTro1.chr19 45758769 2 - 82489036 AG s canFam1.chr27 10773568 2 - 49087461 AG a score=482.0 s hg17.chr17_random 645845 5 + 2618010 TGAGG s panTro1.chr19 45758771 5 - 82489036 TGAGG a score=8510.0 s hg17.chr17_random 645850 81 + 2618010 CAGAGGAAGCAGCTGGCCTGAGCGGTGGCGGGTGAGGGCAACACGCTGTCACTGGGAGGGGCAGCAGTCCCTGCTGGACCT s panTro1.chr19 45758776 81 - 82489036 CAGAGGAGGCAGCTGGCCTGAGCGGTGGCGGGTGAGGGCAACGCGCTGTCACTGGGAGGGGCAGCAGTCCTTGCTGGACCT s danRer1.chrNA 210941568 80 + 390413307 CAGGGAGAGAGGTTGACCCCTG-GGTAGCTTGCTGGGGTCAGAGGCCCCTAGGTAGAAGGCCAGGGGGCACCCTGGGGCCT a score=16940.0 s hg17.chr17_random 645931 188 + 2618010 GACCCCAGGTTGCTGTTCACTTTGGCAGTTTGATAAAATTCCAAAAGGAGAACCACAGTCCTGGCTTGGGGGTGGCTGCGCGCTTGTGTCAGGACCCCACCTAGAGGCTGGGACCTAACACTGGTGTGTCTGTGGCCTGAGGATGGTACATCCCGGGGT-CCAAAGACAGCCCACTGGTGCTCATTTGC s panTro1.chr19 45758857 189 - 82489036 GACCCCAGGTTGCTGTTCACTTTGGCAGTTTGATAAAATTTCAAAAGGAGAACCACAGTCCTGGCTTGGGGGTGGCTGCGCGCTTGTGTCAGGACCCCACCTAGAGGCTGGGACCTAAGACTGGTGTGTCTGTGGCCTGAGGATGGTACATCCTGGGGTCCCAAAGCCAGCCCACTGGTGCTCATTTGC a score=73053.0 s hg17.chr17_random 646663 787 + 2618010 gttgaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccactgtgcctggccaggactatcatttaatacccattagattgtcaaaaatactaaagtttttcagaacatgctgaaagtgggatttcttcattctttgctcatgggaatgtcagttgacaccactctagaggataatttggcagttcttggtaaagttgaagatttatgtccaacaatccagaaagtccactattaggttcctttccatggaaaaattctctcatgtgtgcacaggaaaacatggaccaagatgctAGtttgtttgtttatttatttatttatttatttttgagacagagtcttgctctgttgctcaggctggagcgcggtggcacaatctccgctcactgcaagctccgtctcccaggttcacatcattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccatgcccggctaattttttgtatttttagcagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccTtaatttttgtatttttagtggagatggggtctctctactctctatgtcagccaggctggtcttgaattcctggcctcaagtgatctgcctgcctgaccctccaaaagtgctaggattacaggtgtgagccaccacactcggTGG s panTro1.chr19 20287285 779 - 82489036 GttgaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccactgtgcctggcCAGGAatatcatttaatacccattagattgtcaaaaatattaaagtttttcagaacatgctgaaagtgggatttcttcattctttgctcatgggaatgtcagttgacaccactctagaggataatttggcagttcttggtaaagttgaagatttatgtccaacaatccagaaagtccactattaggttcctttccatggaaaaattctctcatgtgtgcacaggaaaacatggaccaagatgctAGtttgtttgtttgtttatttattt--------ttgagacagagtcttgctctgttgctcaggctggagcgcggtggcacaatctccgctcactgcaagctccgcctcccaggttcacatcattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccatgcccggctaattttttgtatttttagcagagacggggtttcaccatgttagccaggatggtctcgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggccTtaatttttgtatttttagtggagatggggtctctctactctctatgtcagccaggctggtcttgaattcctggcctcaagtgatctgcctgcctgaccctccaaaagtgctaggattacaggtgtgagccaccacactcggTGG a score=28203.0 s hg17.chr17_random 647450 159 + 2618010 TAAGAGTTATTGTATAAAGTTTTGACATAATTTATAGTATCAGCCTTCTTCCTCTATCCTCACAGAAGGCCTCATGGTGAGTTTGATGTGCAGGTTAAAATATATAATTA-TTGCAATATGTTGTAAGAAATGTTTCCTAA-TTAAGATTTTTATGAAATT s panTro1.chr19 20288064 159 - 82489036 TAAGAGTTATTGTATAAAGTTTTGACATAATTTATAGTGTCAGCCTTCTTCCTCTATCCTCACAGAAGGCCTCATGGTGAGTTTGATGTGCAGGTTAGAATATATAATTA-TTGCAATATGTTGTAAGAAATGTTTCCTAATTTAAGA-TTTTATGAAATT s canFam1.chr9 16541542 150 + 53642819 TAAAGAATGTTTTATGAAGTTTTGACATGGTTTATAATATCATTTTTCTTCCTCTATTCTTACAGAAGGTCTTATGATGGGTTTGATGTATAGGTTGAAATACATAATTAGTTGCAACA---TATGAAAAATG-CTCCtaa-ttaa---tt---tgtaatt a score=11044.0 s hg17.chr17_random 647609 141 + 2618010 AAACGTAtttat--------ttatttattttgagatagagtatcactctgttaccaggctggagtgtagtggcaggatttcagcccactgcaatctctgcctcccgggtttaagcaattgtcgtgcctcagccccctgagtagctggaa s panTro1.chr19 20288223 147 - 82489036 AAACGCatttatttatttaattatttattttgagatagagtttcactctgttaccaggctggagtgtagtggcaggatttcagcccactgcaatctctgcctcccgggttaaagc-attatcgtgcctcag-cccctgagtagctggaa a score=527.0 s hg17.chr17_random 648373 5 + 2618010 AATAG s mm5.chr11 24709798 5 - 121648857 AAAAT s rn3.chr10 24719973 5 - 110733352 AAAAT a score=47093.0 s hg17.chr17_random 648378 219 + 2618010 TTTAAAATCAAAGTTTAAGTAGAAAACAT-TATTTTATTTGGCTCATTGGTTAGATG--TAAGTGATGTGAAATACTTAAACAT-CCATTATTGTTTTTAATATAATTTGGAAAATATGAGTTGCTTTGGATTA-TTAAAAC--TTCATTTATTTGTACCATTGATGCATAAATTCTCAGTCTAGGTTTTAGCGAAGTCTGGATTTTAAAAAATTGACTGTGATAT s mm5.chr11 24709803 186 - 121648857 TTTTATATAAAGACTTAAGTAGAGAA----GATTTTATAT-----ATTGAT---------AAATAGTATGAAAACTGTAAACAT-GTATTATTGCTTTTAATCTAATTTAGAAAATATGAGTTGCTTTGAAGTA-TTGAAATAACTCATTTATTTTTACCATTG---TATAAATAATTAATCAAGGTTTAA-----------------AAAAAGTGCATGAAACAT s rn3.chr10 24719978 194 - 110733352 TTTTATATAAAGATTTAGGTGGAGAA----GATTTTATAT-----ATTGTTCAGATGTTTAACTAGTATGAAAAATATAAGCATATTATTATTGTTTTTAATATAATTTAGAAAATGTGAGCTGTTTTGAAGTA-TTAAAACAACTCACTGATTTTTA-CATTG---TATAAATAATCAATCTAGGTTTA------------------CAAAATTACATAAAACAT s canFam1.chr9 16541692 224 + 53642819 ttttaaataaaaGTTTAAGTAGAAAAAATGGCTTTTATTTAGCTCATTGGCCAGATTTTTAAAT-TTTTAAAATGCTTAAGTGT-TTATTGTTGCTTTTAATATAATTTGGAAAATGTGAATCACCTTGGAATACTTAAAACTACTTATTTATTTTTGCCATTGATCTATAAATACTCAGTCTAGGTTTTAGTGATGTCTGGGTCTAAAAAAATTCCCTGTGACAT a score=1445.0 s hg17.chr17_random 648597 11 + 2618010 TAGTTCAAGTC s mm5.chr11 24709989 11 - 121648857 TAGCCCAGGTT s rn3.chr10 24720172 11 - 110733352 TATCCTAGGTT a score=3465.0 s hg17.chr17_random 648885 36 + 2618010 tgctgggattacaggtgtgtgccaacacacctggcc s panTro1.chr19 20289683 36 - 82489036 Tgctgggattacaggtgtgtgccaacacacctggcc a score=16352.0 s hg17.chr17_random 648921 57 + 2618010 --AAGTTGTATATACT---ATTAATCTAGGCTATTTCTGACACT-GTTGATTTTCCTTTTCCC s panTro1.chr19 20289719 60 - 82489036 --aagttgtatatACTGGGATTAATCTAGGCTATTTCTGACACT-GTTGATTTTCCTTTTCCC s mm5.chr11 24710001 49 - 121648857 --AAGGTGAACATATT---------TTGTACTATTTCTGATAATAATTGGTCTTTCTTTT--- s rn3.chr10 24720184 50 - 110733352 --AAGGTGAATGTATT--------TTTGTGCTATTTCTGATAATAGCTGTTTTTTCTTTT--- s canFam1.chr9 16541932 57 + 53642819 --AAGATGCACATGTT---ATTAACCTAGGCTATTTCTGACACT-GCTGGTTTTTCTTTTCCC s danRer1.chr11 6185680 46 + 27258617 GGATCATATAAACATT-----AAGTCTGAAC--TCTCTGTCATT-GTT--TTTAAC------- a score=0.0 s hg17.chr17_random 648978 3 + 2618010 CTT a score=2820.0 s hg17.chr17_random 648978 3 + 2618010 CTT s panTro1.chr19 20289779 3 - 82489036 CTT s mm5.chr11 24710050 3 - 121648857 CTT s rn3.chr10 24720234 3 - 110733352 CTT s canFam1.chr9 16541989 3 + 53642819 CTT a score=136320.0 s hg17.chr17_random 648981 95 + 2618010 AGGTGAGGCAGGCGACTAATCAGATTGTGATGAATTGTGCTGATATTGATATTATTACAGCTTCATATGCACCAGAAGGAGATGAAGGTAAGAGC s panTro1.chr19 20289782 95 - 82489036 AGGTGAGGCAGGCGACTAATCAGATTGTGATGAATTGTGCTGATATTGATATTATTACAGCTTCATATGCACCAGAAGGAGATGAAGGTAAGAGC s mm5.chr11 24710053 95 - 121648857 AGGTAAGGCAGGCAACCAATCAAATTGTGATGAATTGTGCTGATATTGACATTATTACAGCTTCATATGCCCCAGAAGGAGATGAAGGTAAGAAC s rn3.chr10 24720237 95 - 110733352 AGGTAAGGCAGGCAACCAATCAGATTGTGATGAATTGTGCTGATATTGACATTATTACAGCTTCATATGCGCCAGAAGGAGATGAAGGTAAGAAC s canFam1.chr9 16541992 95 + 53642819 AGGTGAGGCAGGCAACCAATCAGATTGTGATGAATTGTGCTGATATTGACATTATTACAGCTTCATATGCACCAGAGGGAGATGAAGGTAAGAGT s fr1.chrUn 199211318 95 - 349519338 AGGTTACACAAGCCACAAATCAGATAGTGATGAACTGTGCTGACATAGACATCATCACAGCCTCTTTTGTACCTCAAGGAGGAGAAGGTGAGTAG s danRer1.chr11 6185726 95 + 27258617 AGGTTACACAAGGGACAAACCAGATTGTGATGAACTGTGCTGATATAGACATAATTACTGCATCTTTTGTGCCTGACGGGGGGGAAGGTGAGTGC a score=8965.0 s hg17.chr17_random 649076 17 + 2618010 TG---TTTTCCATTTTAATT s panTro1.chr19 20289877 17 - 82489036 TG---TTTTCCATTTTAATT s mm5.chr11 24710148 15 - 121648857 TG-----TTCCATTTTAATT s rn3.chr10 24720332 17 - 110733352 TG---TTTTCTGTTTTTATC s canFam1.chr9 16542087 16 + 53642819 TG---TTTTCCA-TTTAATT s fr1.chrUn 199211413 20 - 349519338 TAAGACTTTTTATTGCAATT a score=11215.0 s hg17.chr17_random 649093 96 + 2618010 TGCTGTCTGCATGTGCATATGT--GGGgtgtgtgtgtgtgtgtgtgtgtgAGAGAGAGAGAGAGAGAC--------ATTTTCAGGTTAAGACTTCAGTGTTTGTTA s panTro1.chr19 20289894 98 - 82489036 TGCTGTCTGCATGTGCATATGTGGGGGGCGGGTGTGTGTGTGTGTgagagagagagagagagagagaC--------ATTTTCAGGTTAAGACTTCAATGTTTGTTA s mm5.chr11 24710163 67 - 121648857 TG---------------------------------------GTATGTGAGAGACAGATAGAGCCGGACTGACTTAGACTTTCAGTCTGAAACTTCTATACTGCCTG s rn3.chr10 24720349 67 - 110733352 TG-------------------------------------GTATGTGAGAAAGACAGACAGAGTCTGACTGACTG--GCTTTTGGAATGAAACTTCAATACTGCTTG s canFam1.chr9 16542103 71 + 53642819 TGCTGTCTGTGTGTGTATG------------------ATGTGTGTGTG-GTGATAAAT--------AC--------ATTTGCAGATTAAGATATCAGTTTTTGTTG a score=2784.0 s hg17.chr17_random 649189 5 + 2618010 CTTTA s panTro1.chr19 20289992 5 - 82489036 CTTTA s mm5.chr11 24710230 5 - 121648857 CTTTA s canFam1.chr9 16542174 5 + 53642819 CTTTA a score=2030.0 s hg17.chr17_random 649194 8 + 2618010 GAAATGGG s panTro1.chr19 20289997 8 - 82489036 GAAATGGG s canFam1.chr9 16542179 8 + 53642819 GAAATAGG a score=29477.0 s hg17.chr17_random 649202 308 + 2618010 TAAATTCagctgggtgaagtggctcacgcctataatcccagcactttgggaggctgaggcgagcagatccctgagcccatgagtttgagaccagcctgggccacatggcgaaacaaaaacaaacaaacaaacaaaaatattagctaggcatagtggtgcgtgcctgtagtcccagctatttgggaggctgaggtgggaggatctattgagcccaggtggccgaggctgcagtgagccatgactgcgccgctgcactccagcctgtgcgacagagtgagaccctgactcaaaaaaagaaaaagaaaaaG s panTro1.chr19 20290005 308 - 82489036 TAAATTCagctgggtgaagtggctcacgcctataatcccagcactttgggaggctgaggcgagcagatccctgagcccatgagtttgagaccagcctgggccacatggcgaaacaaaaacaaacaaacaaacaaaaatattagctaggcatagtggtgcgtgcctgtagtcccagctatttgggaggctgaggtgggaggatctattgagcccaggtggccgaggctgcagtgagccatgactgcgccgctgcactccagcctgtgcgacagagtgagaccctgactcaaaaaaagaaaaagaaaaaG a score=456.0 s hg17.chr17_random 649510 4 + 2618010 GGTA s panTro1.chr19 20290313 4 - 82489036 GGTA s rn3.chr10 24720558 4 - 110733352 AGTT a score=15623.0 s hg17.chr17_random 649514 55 + 2618010 AAATGTTTATGGGAAATATTGAATAGTATAACCTAACAGTATTGTGAAATAAATG s panTro1.chr19 20290317 55 - 82489036 AAATGTTTATGGGAAATATTGAATAGTATAACCTAACAGTATTGTGAAATAAATG s rn3.chr10 24720562 55 - 110733352 AGTTGTTTATGGGACTATTTGAATAGTATTATCTAAGTGTATTCTGAGATAAATG s canFam1.chr9 16542225 47 + 53642819 AGATGTTCATGGGAAATATTTTA----ATAATCT----GTACTATGAGATAAAGG a score=2334.0 s hg17.chr17_random 649569 10 + 2618010 TCACAATTTA s panTro1.chr19 20290372 10 - 82489036 TCACAATTTA s rn3.chr10 24720617 10 - 110733352 TCAGAATTTA a score=28214.0 s hg17.chr17_random 649579 314 + 2618010 TTTT-ACTTTTAAAtttatttttattttta-ttttttttgagacagagtcttgctctgatgcccaggctggagtgcagtggcatcatctaagctcactgctatctctgcctcgtgagttcaagcagttctccctgcctcagcctcctgagtggctgagattacaggtgtccaccatcatacctagctaatttttgtatttttagtagagacagggttttgctatgttggccaggctggtcttgaactcctgatctcaggtgatctgcatgcctcccaaagtgctgggattacagatgtgagccaccacacccggGC s panTro1.chr19 20290382 316 - 82489036 CTTTAACTTTTAAAtttatttttatttttatttttttttgagacagagtcttgctctgatgcccaggctggagtgcagtggcgtcatctaagctcactgctatctctgcctcgtgggttcaagcagttctccctgcctcagcctcctgagtggctgagattacaggtgtccaccatcatacctagctaatttttgtatttttagtagagacagggttttgctatgttggccaggctggtcttgaactcctgatctcaggtgatctgcctgcctcccaaagtgctgggattacagatgtgagccaccacacccggcc a score=25662.0 s hg17.chr17_random 649893 97 + 2618010 AAATGTCACAATTAAAATTCCACTTCCAAGATTAACTTATTTTGTGGTACTAGGGAAATCATATTTTCATAAGTATAAAATGAATATAATAC---GCATA s panTro1.chr19 20290698 97 - 82489036 AAATGTCACAATTAAAATTCTACTTCCAAGATTAACTTATTTTGTGGTACTAGGGAAATCATATTTTCATAAGTATAAAATGAATATAATAT---GCATA s rn3.chr10 24720627 90 - 110733352 AATTCTCGAAACTTAAATTCTCCTTGAAA---CAACTTATGTAGTTATCCTA-GGAAATCACATTTT-ATAAATGTAAGATGAATATATAA-----CATA s canFam1.chr9 16542272 99 + 53642819 AAATGCCACAGTCT-AATTCTGCTTCAAACATTAACATATTTTGTGATGCTAGGCAGATTACATTTTCATAAATGTAAAATGAATAGAATACCATGCATA a score=302.0 s hg17.chr17_random 649990 2 + 2618010 AT s panTro1.chr19 20290795 2 - 82489036 AT s rn3.chr10 24720717 2 - 110733352 AC a score=22935.0 s hg17.chr17_random 649992 69 + 2618010 AAAGCTGATGAGTTATTTGAAAAATTAAGTACTTTGAACATGAAA----GGCTCCTCAAA---------------GAGGCTTCGTTTT s panTro1.chr19 20290797 69 - 82489036 AAAGCTGATGAGTTATTTGAAAAAGTAAGTACTTTGAACATGAAA----GGCTCCTCAAA---------------GAGGCTTCGTTTT s rn3.chr10 24720719 69 - 110733352 AAAGCTGATGAATTATTTTTTAAATTAAGTACTTTGAACATGAAA----GTTTCATTAAA---------------GAAGCTTAGTTTT s canFam1.chr9 16542572 87 + 53642819 TAAGCTGAAGAATTATTTTAAAAA-TAAGTGTTTTGAACATGAAAGATTGGTTCATCAAATGGCTTAGTTCATATGAGGTTTTCTTTC a score=10663.0 s hg17.chr17_random 650061 53 + 2618010 TATGTTTTTCTTAAAGTTTTTTTTTCTTTTTGTACTATAGTTTAAAATTGAGA--- s panTro1.chr19 20290866 52 - 82489036 TATGTTTTTCTTAAAG-TTTTTTTTCTTTTTGTACTATAGTTTAAAATTGAGA--- s rn3.chr10 24720916 42 - 110733352 TGTATTTTTCTTAAAAACACTTCACTACCTTGAACC-----------TTGAGA--- s canFam1.chr9 16542843 56 + 53642819 TGTGGTTTTCTTAAAGTGTTTTTTCCTTCTTGAACAATAGATTAAATTTGGGAGAA a score=49760.0 s hg17.chr17_random 650114 146 + 2618010 TAAGTCATACTCCTAATTCAGAGAAAAACATTTGCTTTATGAGAC--AATATGAAGATTAGAAGCTAAATAATGGAGTTAGTTACAGGGGAAGAACATGCTAAAAAGAAACATG--GTATAGAATGTGGA-ACTCG-ATTAGTGTCTATAAA s panTro1.chr19 20290918 146 - 82489036 TAAATCATACTCCTAATTCAGAGAAAAACATTTGCTTTATGAGAC--AATATGAAGATTAGAAGCTAAATAATAGAGTTAGTTACAGGGGAAGAACATGCTAAAAAGAAACATG--GTATAGAATGTGGA-ACTCC-GTTAGTGTCTATAAA s mm5.chr11 24710345 137 - 121648857 TAAGTCTTGCTTATAATT--GGGAAAAATACTTG----ATGAGCCCAAGTGTTAAGGTTAGAAGTTGCATGATGGTGTTAGTCATGAGGG-------TGTT-AAAAGAGCCATGATGTTTTTCTTGTGGA-AGTCCTATGAGCATCTTTAAG s rn3.chr10 24720961 137 - 110733352 TAAGTCTTACTTATTATT--GGAAAAAATACTTC----ATGAGGCCAGATGTTAAGGTTAGAAGTTGGATGATGGTGTTAGTTGTGAGAA-------TGTT-AAAAGAACCACGATGTATTTTGTGTGGAGACTCT-CTTAGCATCTTTAAA s canFam1.chr9 16542899 141 + 53642819 TGAATCTTACTTATAATC-GAGAAAAAATATTTGCCTTATGG-----AATGTGGAGGTTAGAAATTAGATGACCAAGTTAGTTACATAGTAAGAATATGTTAAAAAGAAACATTACATAGAGTGTGTGGG-AA----CTCAGCATCTTTAAA a score=91.0 s hg17.chr17_random 650260 1 + 2618010 A s canFam1.chr9 16543040 1 + 53642819 A a score=546.0 s hg17.chr17_random 650260 2 + 2618010 AT s panTro1.chr19 20291064 2 - 82489036 AT s rn3.chr10 24721098 2 - 110733352 AT a score=946.0 s hg17.chr17_random 650262 10 + 2618010 GAGAACTGTt s rn3.chr10 24721100 10 - 110733352 GAGAACTGTT a score=26721.0 s hg17.chr17_random 650583 137 + 2618010 GAGAACTGTTTTAGACCTTATAATTTTAGTATGAA--------AGTAGTCCATTTTGACTGGAAATCTTATTCCCGTATGAGCTGATTTTTAAATAGATACCAAGTTTGGCATAAACTCTTACAAGTACATCAGTATTGGAGCTG s panTro1.chr19 20291066 137 - 82489036 GAGAACTGTTTTAGATCTTATAATTTTAGTATGAA--------AGTAGTCCATTTTGACTGGAAATCTTATTCCCGTATGAGCTGCTTTTTAAATAGATACCAAGTTTGGCATAAACTCTTACAAGTACATCAGTATTGGAGCTG s canFam1.chr9 16543042 143 + 53642819 GAGAACTATTTTAGACCTTGTAATTACAATAAGGATTAAATTGAGTAGTCAGTTTTGGCCTGAAATCTTATTCCCATATAAGCTACATTTTAAAAAGTTGTCAAGTTTGGCATGAA--CTTACAAGTAAATTGGAACTGGAATTG a score=5682.0 s hg17.chr17_random 650720 90 + 2618010 GATTGCtttttactttttttttttttgagaga--gtc-tcgctctgtca-cccaggct-ggggggcagtggcatgatctcaactaccacaacctc s panTro1.chr19 20291203 90 - 82489036 GATTGCtttttac-----ttttttttgagagaagatcttcgctctgtcaccccaggctgggggggcagtggcatgatctcaactaccacaacctc a score=19896.0 s hg17.chr17_random 650810 227 + 2618010 tgtctcctggtctcaagccatcctcccacctcaccctcccaagtagctgatattacaggcgtgtaccaccatgcctggctaatattcgtatttgtatttttttatagatat---ggggggggtcttcctatattgcccaggctggtcttgaactcctgggctcaagggatccgacctctttggcctcgcaggttgctgggattacaggcaagagccaccacacctggTTG s panTro1.chr19_random 35308454 229 - 57627672 tgtctcctggtctcaagccatcctcccacctcaacctcccaagtagctgatattacaggcgtgtaccaccatgcctggctaatattcgtatttgtatttttttatagatatgggggggggggtcttcctatattgcccaggctggtcttgaactcctgggctcaagggatctgacctcttcggccttgcaggttgctgggattaca-gcaagagcccccacacctggTTG a score=67.0 s hg17.chr17_random 651037 1 + 2618010 C s panTro1.chr19_random 35308683 1 - 57627672 C s mm5.chr11 24710566 1 - 121648857 T s rn3.chr10 24721189 1 - 110733352 T a score=16887.0 s hg17.chr17_random 651038 60 + 2618010 CTTTTTACTTTTGATTTCACCTAGACATTCCTTGTCAAAATG--GTTATTGGTTACTC----------TGAG s panTro1.chr19_random 35308684 60 - 57627672 CTTTTTACTTTTGATTTCACCTAGACATTCCTTGTCAAAATG--GTTATTGGTGGCTC----------TGAG s mm5.chr11 24710567 58 - 121648857 CTTTTTACTTTTGTGTTTACCTTGCCATTCCTTGGCAGAATA-TTTTATTGGTTAATT-------------G s rn3.chr10 24721190 56 - 110733352 CTTTTTACTTTTGTGTTTACCTTGCCATTCCTTGCTAT------TTTATTGGTTAGTT----------GTAG s canFam1.chr9 16543185 51 + 53642819 CTTTATATTTTTGA---------------------CAAAATGATTTTTTTGGTTAGTCTCCACTACTCTGAG a score=2447.0 s hg17.chr17_random 651098 8 + 2618010 ACTTCttt s panTro1.chr19_random 35308744 8 - 57627672 ACTTCTTT s mm5.chr11 24710625 8 - 121648857 ATTTCATT s canFam1.chr9 16543236 8 + 53642819 ACTTTCTC a score=821.0 s hg17.chr17_random 651106 18 + 2618010 aataaaaaataatttaag s panTro1.chr19_random 35308752 18 - 57627672 AATATAAAATAATTTACA s mm5.chr11 24710633 18 - 121648857 GAAAAATCTCATTTGACA a score=1260.0 s hg17.chr17_random 651124 14 + 2618010 gccgggcgcagtgg s panTro1.chr19_random 35308770 14 - 57627672 GCCGGGCGCGGTGG a score=13155.0 s hg17.chr17_random 651288 144 + 2618010 cagctactcgggaggttgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccaccgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaataaaaaaataaataaaa s panTro1.chr19 20291957 144 - 82489036 cagctactcgggaggttgaggcaggagaatggcgtgaacccgggaggctgagcttgcagtgagccgagatcgcgccaccgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaataaaataaataaaa a score=29770.0 s hg17.chr17_random 651432 108 + 2618010 taaaataatttaCACATTTGATCTTTTAACTTACATTTTATATTTTGATTTCCTCTCTCCTTTACATTATACTGAAAAGAAGT-------TTCATTTTAAGGCCTCATAACATTT s panTro1.chr19 20292101 103 - 82489036 TAA-----TTTACACATTTGATCTTTTAACTTACATTTTATATTTTGATTTCCTCTCTCCTTTACATTATACTGAAAAGAAGT-------TTCATTTTAAGGCCTCATAACATTT s mm5.chr11 24710651 102 - 121648857 TAGATAAAATTAC-CAGTATTTTTCTTAGTTTCTATTTTTTATTCT---------TCTGCTTTACATTATGTTGAAATGAAGCATACAGGTTTCTTTTAAGGTC---TAGCATTT s rn3.chr10 24721262 102 - 110733352 TAGATTAAATTAC-CAATATTTTTCTTAGTTTCTATTTTTTATACT---------TCTGTTTTACATTATGTTGAAATGAGGCATACAAATTTATTTTAAGGTC---TAGCATTT s canFam1.chr9 16543408 102 + 53642819 TCAAATAAGTTAGAAACTTGACCTTTTAGTTCACATTTTGTATTTG----CTCTTTCCCCTGTCTTTTACACTGAAAGGAAGCATATAAGTAACT-----GGAC----AATATTT a score=95736.0 s hg17.chr17_random 651540 229 + 2618010 ATGATTTTTTCTTAAACTATTTTGTCTATAGAAAGTC---AAAGTAGTAGCAGTTGAACATACTGTTCCGAAGAAGTACTTAAGTTCAATTGATTGTAA-----ATTAGATCAAACTGC--------------TGGAAGAACAGATTCTTCAAATGGAC-TTGAATGAGTGCCA-CTTTTAAAAAATTGTCTGGTAAATGAAAGAGTGATTATTTAATTTCTTTAACTGTGGAGAAAAATAGAAGTACTTTAG s panTro1.chr19 20292204 235 - 82489036 ATGATTTTTTCTTAAACTATTTTGTCTATAGAAAGTC---AAAGTAGTAGCAGTTGAACATACTGTTCCCAAGAAGTACTTCAGTTCAATTGATTGTAATGTAAATTAGATCAAACTGC--------------TGGAAGAACAGATTCTTCAAATGGAC-TTGAATGAGTGCCAGCTTTTAAAAAATTGTCTGGTAAATGAAAGAGTGATTATTTAATTTCTTTAACTGTGGAGAAAAATAGAAGTACTTTAG s mm5.chr11 24710953 235 - 121648857 ATGACTTTTTCTTAAGACATCTTA-AAATAGAAAGAT---GAGGTAATAGTGGTTGCCCATACTGTTGCTACAGTTAGCTTATGCTCACTAGTTTGTGA-----AATAGAACTGTGTGCTAC-ATTTTAACTTTAGAAAAACAAATTCTTCAGATAGAC-TTGA---AGTGTGGACTTATGAAAGATTGCTTGGTAAGTGAGAGGATGA----TCAATTTCTTCACTTCTGAGGAAAAGTGGAAATACTTGAG s rn3.chr10 24721369 235 - 110733352 ATGACTTTTTCTTAAGACATCTTA-TAGTAGAAAGAT---GAGGTAACACTGGTTGCCCAGACTATTGCTACAGTTAGCTTATGCTCAGTAGTTTATGA-----AGTCAAACTGCTTGCTAC-ATTTTAACTTGAGAAAAAC--ATTCTTCAAGTAGAC-TTGAGTGAGTGCAGCCTTTTGAAAGATTGCCTGGCAAATAAGAGGATGA----TCAATCTCTTCACTTCTGAGG-AAAGTGGAAACACTTGAG s canFam1.chr9 16543515 243 + 53642819 ATGAATTTTTCGTAAATTATCTTGTCTGTAGAAAGACCAAAAAACAGTAGCAGTTGAGCAGATTATTGCCAAGAAGTACTTATGTTTGATTGTTTGTGA---------GATCAAACTGCTGTGATTTTTAAGTTAGAGGAACAGATCCTTCATATGGACTTTGAGTGAGTGCCAACATTAAAAAAGTTGTGTGGTAA-TAAAAGAGGGATTATTTAATTTCTTTACCTGTGAAGAAAAATACAAGCACCTTAG a score=915.0 s hg17.chr17_random 651769 46 + 2618010 CCAGGTATA--------------------------------------------------TCAAAGCAACAAGGCTTTC--TTTGTT---------------------------------------GCAGGTAGAGAA s panTro1.chr19 20292439 46 - 82489036 CCAGGTATA--------------------------------------------------TCAAAGCAACAAGGCTTTC--TTTGTT---------------------------------------GCAGGTAGAGAA s mm5.chr11 24711188 137 - 121648857 ATAGTTCCATGGAGACTAGCTTTCAGTTAAAGAACATTTCAGTTAGTATTGTTTTTTGTTTAAAGAAAAAAACCCTGCCATTTATTATTTACTTATCTAGTCTAGCCCATGTACTTCGTGCTATGGCAGATAGAAAC s canFam1.chr9 16543758 41 + 53642819 -CCAGCATA--------------------------------------------------TCAAGACAA----GCTTGC--TTTGTT---------------------------------------GTAGGTAGAGAA a score=0.0 s hg17.chr17_random 651815 4 + 2618010 TGTT a score=373.0 s hg17.chr17_random 651815 4 + 2618010 TGTT s panTro1.chr19 20292485 4 - 82489036 TGTT a score=1770.0 s hg17.chr17_random 651819 16 + 2618010 TAAATTCGATGTGTGG s panTro1.chr19 20292489 16 - 82489036 TAAATTCGATGTGTGG s canFam1.chr9 16543799 14 + 53642819 TAAATTTGGTATAG-- a score=5244.0 s hg17.chr17_random 651835 13 + 2618010 TTTTAAAGTGGTA s panTro1.chr19 20292505 13 - 82489036 TTTTAAAGTGGTA s rn3.chr10 24721865 13 - 110733352 TGTTAATGTGGTA s canFam1.chr9 16543813 13 + 53642819 TTTTAAAATGGTG a score=15695.0 s hg17.chr17_random 651848 42 + 2618010 -----TGTAGATAGGTAGATCTAGTAATATAAATGTGTA-CCTTCCAG s panTro1.chr19 20292518 42 - 82489036 -----TGTAGATAGGTAGATCTAGTAATATAAATGTGTA-CCTTCCAG s mm5.chr11 24711556 42 - 121648857 -----TATAGATAGGCAAATCTAGTAAAATACACATGCA-CCCTTCAG s rn3.chr10 24721883 40 - 110733352 -----TATAGATAGG-GAATCTAGTAAATTAAACATGCG-CCTTCAG- s canFam1.chr9 16543826 45 + 53642819 CGCAGTATGGATAGGAAGA--TAGTAA-ATACATGTGCGTCCCTCCAT a score=2317.0 s hg17.chr17_random 651890 6 + 2618010 CTGGCA s panTro1.chr19 20292560 6 - 82489036 CTGGCA s rn3.chr10 24721923 6 - 110733352 TAGGCA s canFam1.chr9 16543871 6 + 53642819 TTGGCA a score=13182.0 s hg17.chr17_random 651896 62 + 2618010 TGGTTTCAGCTCAAGTTTGTTTTTTATCTTCCTGTACTAAAAATGTCGGGATAGAATTCAGG s panTro1.chr19 20292566 62 - 82489036 TGGTTTCAGCTCAAGTTTGTTTTTTATCTTCCTATACTAAAAATGTCGGGATAGAATTCAGG s canFam1.chr9 16543877 60 + 53642819 TGGTTTCAGCTCAGGTTTG-TTTTTATCTTCCTCTGCT-AAAATGCCAGGAAAGAATTCAGA a score=27791.0 s hg17.chr17_random 651958 292 + 2618010 TGACTGAAAAGttctttttttttttttttgagatggagtctagctctgtcgcccaacgatctcagcttgctgcaacctccacctctggggttcaagcaattcttctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccacacccggctaatttttgtatttttagtagagatggggtttcaccatgtttgttaggctggtcttgaactcctggcctcgtgatccacccgcctcagcctcccaaagtgttgggattacaggcgtgagccaccgcgcccgacc s panTro1.chr19 20292628 292 - 82489036 TGACTGAAAAGttctttttttttttttttgagatggagtctagctctgtcgcccaacgatctcagcttgctgcaacctccacctctggggttcaagcaattcttctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccacacccggctaatttttgtatttttagtagagatggggtttcaccatgtttgttaggctggtcttgaactcctggcctcgtgatccacccgcctcagcctcccaaagtgttgggattacaggcgtgagccaccgcgcccaacc a score=870.0 s hg17.chr17_random 652250 7 + 2618010 TGACTGA s panTro1.chr19 20292920 7 - 82489036 TGACTGA s canFam1.chr9 16543937 7 + 53642819 GAACTCA a score=26558.0 s hg17.chr17_random 652257 119 + 2618010 AAAGTTTTGAATATGTGTAACCGAATGTTGCTAAGCTCATAATGATCTGTATCTCACGGAAGC--CCAGTTAGTGTTCTTACTAAGAGAGTCAGGAGAGAAATGAAAACTTAATGGA--AAAG s panTro1.chr19 20292927 119 - 82489036 AAAGTTTTGAATATGTGTAACCGAATGTTGCTAAGCTCATAATGATCTGTATCTCACGGAAGC--CCAGTTAGTGTTCTTGCTAAGAGAGTCAGGAGAGAAATGAAAACTTAATGGA--AAAG s mm5.chr11 24712391 112 - 121648857 AAGGTTTGCTGTGTGTGCAGCTGAGTGGTGCTAAGCTGGCAGTGACCTGCATT-----GGAGCAACCTGAGAGTGCTCTCACCTTGCAAG-CAGCAGGGCAGTTCCTGCTCAAGG-----AGT s canFam1.chr9 16543944 121 + 53642819 AATGCTTTGAGTGTGCATAACTGAATGGTGCCAAGCCCATAATAGTCTGAATATCAAGGAAGC--AGTGTTTGTGTTCTCACTAAGAGGGTCAGAAGAGAAATGAAAGCTTATAGAAGTGAAG a score=23407.0 s hg17.chr17_random 652376 55 + 2618010 AAGATTTGAAGAGAGATTCTGATAAAACATTA-AATTATTTTAGATACATAATATA s panTro1.chr19 20293046 55 - 82489036 AAGATTTGAAGAGAGATTCTGATAAAACATTA-AATTATTTTAGATACATAATATA s mm5.chr11 24712503 54 - 121648857 AGGATCTG--TAGAGACTCTGATAAAACATTGCCGCTTTTTTAGATACTTAAAATC s rn3.chr10 24722279 54 - 110733352 AGGATCAATAGAGAGACTCTGATAAAACATTGCCAT--TTTTACAGACTTAAAATC s canFam1.chr9 16544065 53 + 53642819 GGGATTTA--GAGAGATTCATATAAAACATTACTGTT-TTTTAGGTACATAAAATA a score=1928.0 s hg17.chr17_random 652431 5 + 2618010 TATTC s panTro1.chr19 20293101 5 - 82489036 TATTC s mm5.chr11 24712557 5 - 121648857 TTTTC s rn3.chr10 24722333 5 - 110733352 TTTTC a score=221.0 s hg17.chr17_random 652436 4 + 2618010 AGTg s panTro1.chr19 20293106 4 - 82489036 AATg s rn3.chr10 24722338 4 - 110733352 CACG a score=26270.0 s hg17.chr17_random 652440 283 + 2618010 ctgggtgcagtggctcacgcctgtaatcccagtactttgagaggctgtggtgggtggatcatgacgtcagaagttcaagaccagcctggcgaagatggtgaaaccccatctctacttaaaataaaaaaattagctgggtgtggtggcgggtgcctgtaatcccagctactcaggaggctgaggcagagaattgcttgaacccaggaggcagaggttgcagtgagccaggatcgtgccactgcacgccagcctgggtgacagagactctgtctcaaaaaaaaaa s panTro1.chr19 20293110 283 - 82489036 ctgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgtggcgggtggatcatgacgtcagaagttcaagaccagcctggcgaagatggtgaaaccccatctctactaaaaataaaaaaattagctgggtgtggtggcgggtgcctgtaatcccagctactcaggaggctgaggcagagaattgcttgaacccgggaggcagaggttgcagtgagccaggatcgtgccactgcacgccagcctgggtgacagagactctgtctcaaaaaaaaaa a score=-126.0 s hg17.chr17_random 652723 2 + 2618010 TA s panTro1.chr19 20293393 2 - 82489036 TA s mm5.chr11 24712721 2 - 121648857 AG a score=546.0 s hg17.chr17_random 652725 1 + 2618010 T s panTro1.chr19 20293395 1 - 82489036 T s mm5.chr11 24712723 1 - 121648857 T s rn3.chr10 24722495 1 - 110733352 T a score=58324.0 s hg17.chr17_random 652726 127 + 2618010 TTTCCTTCAGAACTAGCTAAGGTACATTTCTCAACACTTTTCTACCACAGCAACAGGAAAAAACCTGAAGTCATGTGTAAGCCCATGTA--ATTTTAGAGTTTAAG----AGAATGGGAAGTTGTAT-------GAGTTG s panTro1.chr19 20293396 127 - 82489036 TTTCCTTCAGAACTAGCTAAGGTACATTTCTCAACACTTTTCTACCACAGCAACAGGAAAAAACCTGAAGTCATGTGTAAGCCCATGTA--ATTTTAGAGTTTAAG----AGAATGGGAAGTTGTAT-------GAGTTG s mm5.chr11 24712724 129 - 121648857 TTTCCTTCAGAACTAGCTAAACCACATTTCTCAGTCCCTTTCTCCTGTAGCGGCAAG-AGAAACCCAGAGTCATGC-CGAGCTCGTTTG--ATATTAGAATGTAATTCACAAAATGGTAATTTTACT-------GATTTG s rn3.chr10 24722496 130 - 110733352 TTTCCTCTAGAAGTAGCTAAGGCACATTTCTCAATCCTTTTCTCCTGTGGTACCAAG-AGAAACCC--AGTCATGGGGGAGCTCATCTGGTATATTAGGACGGAAGTCACAAAAGGGTAATTTTATT-------GATTTG s canFam1.chr9 16544118 132 + 53642819 TTTTCTTCAAAACTAGCTAAGGTATATTTTTCAACTCATTTCTCCTGTAGCAACGGG-AAAAACCTAGATTCATGTGTAAGCTCATCTA--ATTTTAGAATATAAG----AGAATGGGAAATTATATTAATGTGGAATT- a score=2359.0 s hg17.chr17_random 652853 12 + 2618010 TTAAAGTTTGAA s panTro1.chr19 20293523 12 - 82489036 TTAAAGTTTGAA s rn3.chr10 24722626 9 - 110733352 CTA---TTTTAA s canFam1.chr9 16544250 12 + 53642819 TTAAGGTTTCAG a score=1327.0 s hg17.chr17_random 652865 9 + 2618010 TTGGGGGCa s panTro1.chr19 20293535 9 - 82489036 TTGGGGGCa s canFam1.chr9 16544262 9 + 53642819 TCAGAAACA a score=27597.0 s hg17.chr17_random 652874 298 + 2618010 gccaggtgtggtggctcacacctataatcctagcattttgggagggctaggtgggcggatcacctgtggtcaggagtttgagaacagcctggccaacatggtgaaacaccgtctctactaaaaacacaaaaattagctgggcgtggtggcaggcacctgtaattccagctacttgggatgctgaaggcaggagaatcgcctgaacccgggaggtggaagttgcagtgagcggagattgtgccactgcacgccagcctgggcgacagagcaagactctgtctcaaaaaaaaaaaaaaaT s panTro1.chr19 20293544 298 - 82489036 gccaggtgtggtggctcacacctataatcccagcattttgggagggctaggtgggcggatcacctgtggtcaggagtttgagaacagcctggccaacatggtgaaacaccgtctctactaaaaacacaaaaattagctgggcgtggtggcaggcacctgtaattccagctacttgggaggctgaaggcaggagaatcgcctgaacccgggaggcggaagttgcagtgagcggaaattgtgccactgcacaccagcctgggcgacagagcaagactctgtctcaaaaaaaaaaaaaaaa a score=10914.0 s hg17.chr17_random 653172 33 + 2618010 AGTTTGGATTGGGAACAGGGATAGATTTGGGCT s panTro1.chr19 20293842 33 - 82489036 aGTTTGGATTGGGAACAGGGATAGATTTGGCCT s mm5.chr11 24713028 32 - 121648857 AGTTTGCATAAGGAACAGTGATAGATTTAGCC- s rn3.chr10 24722635 33 - 110733352 GGTTTGCATAAGGTACAGTGATGGATGTAGCCT a score=650.0 s hg17.chr17_random 653205 14 + 2618010 TCCACAtgtatgta s panTro1.chr19 20293875 13 - 82489036 TCCACATGTATGT- s mm5.chr11 24713060 10 - 121648857 TCTGTATATA---- a score=945.0 s hg17.chr17_random 653219 58 + 2618010 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtATATATATATATATATGTAATAAAAA--AGA s panTro1.chr19 20293888 31 - 82489036 -----------------------GTGTGtatatatatatata------ataaaaaGAAGA a score=8063.0 s hg17.chr17_random 653277 46 + 2618010 TAAAAGTAAAATC----AGAAAATTACTTTTAAGGCATGAAATTGTTGCt s panTro1.chr19 20293919 46 - 82489036 TAAAAGTAAAATC----AGAAAATTACTTTTAAGGCATGAAATTGTTGCt s mm5.chr11 24713489 49 - 121648857 TGAAAGTAAAACCAACTAGAAAAGTA-TTTGAAACCATGAAGTTGTTGCA a score=28061.0 s hg17.chr17_random 653323 320 + 2618010 tcttttaatttttttttttttt-ctttttgagatggagtcttcactctgtcgcccaggctggagtgcagtggcgcagtctcggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctccccagcagctggggctacaggcgcacgccgccacgcccagctaatttttgtatttttagtagagacgggattttaccgtattagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattaaaggtgtgagccaccgtgcctggccAATTGTTGCTT s panTro1.chr19 20293965 320 - 82489036 tcttttaatttttttttttttttctttttgagatggagtct-cgctctgtcgcccaggctggagtgcagtggcgcagtctcgcctcactgcaagctctgcctcccgggttcacaccattctcctgcctcgacctccccagcagctggggctaaaggcgcacgccgccacgcccagctaatttttgtatttttggtagagacggggttttaccgtattagccaggatggtctcgatctcctgaccttgtgatctgcccgcctcggcctccaaaagtgctgggattaaaggtgtgagccactgtgcctggccAATTGTTGCTT a score=1419.0 s hg17.chr17_random 653643 5 + 2618010 CTTTG s panTro1.chr19 20294285 5 - 82489036 CTTTG s canFam1.chr9 16544609 5 + 53642819 CTTTG a score=20787.0 s hg17.chr17_random 653648 64 + 2618010 TGTAAGTTTTTATTTGAAGAA-AAAGGCCATTTTTTTGTGATATGTGCAGTCATCCTAAAAGACC s panTro1.chr19 20294290 64 - 82489036 TGTAAGTTTTTATTTGAAGAA-AAAGGCCATTTTTTTGTGATATGTGCAGTCATCCTAAAAGACC s mm5.chr11 24713539 62 - 121648857 TGTAAGTTTTTAATAGGTGAAGAAAGGTCA---TCTTGTGATATGTGCATTAATCCTGAGAAACC s canFam1.chr9 16544614 63 + 53642819 TGTAAGTTTTTAATTAATGGA-AAAAG-CACCATCTTGTGATTTGTGCAGTGACCCAGAAAGACC a score=3717.0 s hg17.chr17_random 653712 17 + 2618010 TATGGGCATGTGTCTGt s panTro1.chr19 20294354 17 - 82489036 TATGGGCATGTGTCTGt s canFam1.chr9 16544677 17 + 53642819 TATTGGCATATGTCTCT a score=129767.0 s hg17.chr17_random 653729 1423 + 2618010 tttttttttttttttttttttgagatggagtcttgctgtattgcccaggctggagtacagtggtgcagtatcggctcactgcaacTAGTAGAACTTT----TTTTTTTTTTTTTAAAGAACTTGTTTTAAAATAATCCTTAATAGGCTTTTATTAACTCTGTTTGGATATTAGTTATGTACCCTTTTCTCTTTGCAAAAATGAAAAATCATTTCAAGTAGAAATTAAAGGTTTGTTTCTCATCCCTTTCTTTAGATATAGTAACAGTTATACCAGATATATATATATATATGtttttttgt---------tttttttttttgagacagagtttcactcttgttgcccaggctggagtgcaatggcatgatcttgctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggatcacaggcgtgcaccaccacgcccagctaatttttgtatttttagtagagacagggtttcaccatgttggccagcctggtctcgaactcgagacctcaggtgatccacctacctcggcctcccaaagtgctgggattacaggcatgagccaccacgcccggccCAGTTATACCAGATATAAGCAAATTTGCTAGTAGTTTAGATTTCTGGAATTGTGCCAACTACACATCAAGAGACTATTTAGCTTTGTTACAGAAGTCAGTATCAGTTTCTTGTTATAAGACGAGACCTGGTTTTACAGACTTTTCTATTTCTCAATGGAACTTTACTCTGAAGATATACTCTTCCATTTAAATACTAGTTCCAAAACCTACATTATATGGTGGCTGCTTAATAAACATTTAACATTTTGGTTAATTTAAATCTTGTTGATGTGTATACATGAATAACTGGGCTAAAAGCAGATACCTTTGATTATTGTGAAACTTCAAGTAAATATTGTGTGAAAAGGACCCCTTCTGTCTCACAAATTCTGGCCCCTCAGCTCATTGTCTGAACAGTGATTCCCTTGCATATAATAAATTCCCTTGGCttatatataataataaatgaagtttattatttatttGAACTTTTTACCCCTGTAAATACCAAGGTTCTTTTTGCCTAAGTGGTAATTTGTGTCATTCAAAGAGtttttattaaatattattattattatttgagatagagtctcactcttattgcccaggctggagtgcagtggcactatctcggctcactacagcctccgtctcctgggttgaagcgattcttgtgcctcagcctcccaagtcgctgggattacaggtgtgtgccaccaaacctggctaatttttaaatttttgtagagatggggtttccccattttggccaggctgctctcaaactgttgacgcccaccttggcctcccaaagtgctgggattacaggtgtgaaccactgcaccagaccTTA s panTro1.chr19 20294371 1434 - 82489036 ttttttttttttttttttt--gagatggagtcttgctgtattgcccaggctggagtacagtggcgcaatatcggctcactgcaacTAGTAGAACTTTCTTTTTTTTTTTTTTTTAAAGAACTTGTTTTAAAATAATCCTTAATAGGCTTTTATTAACTCTGTTTGGATATTAGTTATGTACCCTTTTCTCTTTGCAAAAATGAAAGATCATTTCAAGTAGAAATTAAAGGTTTGTTTCTCATCCCTTTCTTTAGATATAGTAACGGTTATACCAGatatatatatatatatatatatatatatatatgtatttttttttttgagacagagtttcactcttgttgcccaggctggagtgcgatggcatgatcttgctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggatcacaggtgtgcaccaccacgcccagctaatttttgtatttttagtagagacagggtttcaccatgttggccagcctggtctcgaactcgagacctcaggtgatccacctacctcggcctcccaaagtgctgggattacaggcatgagccaccacgcccggccCAGTTATACCAGATATAAGCAAATTTGCTAGTAGTTTAGATTTCTGGAATTGTGCCAACTACACATCAAGAGACTATTTAGCTTTGTTACAGAAGTCAGTATCAGTTTCTTGTTATAAGACAAGACCTGGTTTTACAGACTTTTCTATTTCTCAATGGAACTTTACTCTAAAGATATACTCTTCCATTTAAATACGAGTTCCAAAACCTACATTATATGGTGGCTGCTTAATAAACATTTAACATTTTGGTTAATTTAAATCTTGTTGATGTGTATACATGAATAACTGGGCTAAAAGCAGATACCTTTGATTATTGTGAAACTTCAAGTAAATGTTGTGTGAAAAGGACCCCTTCTGTCTCACAAATTCTGGCCCCTCAGCTCATTGTCTGAACAGTGATTCCCTTGTATATAATAAATTTCCTTGGtttatatataataataaatgaagtttattatttatttGAACTTTTTACCCCTGTAAATACCAAGGTTCTTTTTGCCTAAGTGGTAATTTGTATCATTCAAAGAGtttttattaaatattattattattatttgagatagagtctcactcttattgcccaggctggagtgcagtggcactatctcggctcactacagcctccatctcctgggttgaagcgattcttgtgcctcagcctcccaagtcgctgggattacaggtgtgtgccaccaaacctggctaatttttaaatttttgtagagatggggtttccccattttggccaggctgctctcaaactgttgacgcccaccttggcctcccaaagtgctgggattacaggtgtgaaccactgcaccagaccTTA a score=8397.0 s hg17.chr17_random 655152 60 + 2618010 AATACTCTGTTTAAGTGATAGTTTGATAAGTGTGAACGCAAGTCTGAAATAGGTTTCTTT s panTro1.chr19 20295805 60 - 82489036 AATACTCTGTTTAAGTGATAGTTTGATAAGTGTGAACGCAAGTCTGAAATAGGTTTCTTT s canFam1.chr9 16559830 55 + 53642819 AATCATATATATAAGAGATAATTTGATGTGTGTTAA---AAATTT--AACAGTACTCTTT a score=7310.0 s hg17.chr17_random 655212 79 + 2618010 GCTTGTGAGAAAGTATAACGAATTGCCAAGACAATAGTGACAAACAGAGGGCATATTTTTCAAAGAGGAAGAGTTTATA s panTro1.chr19 20295865 79 - 82489036 GCTTGTGAGAAAGTATAACAAATTGCCAAGACAATAGTGACAAACAGAGGGCATATTTTTCAAAGAGGAAGAGTTTATA a score=9749.0 s hg17.chr17_random 655291 53 + 2618010 TAGTGTTAACATTAAGACAAAAGTCTTAAGTTTCTAATTTCTGATCTTGTTTG s panTro1.chr19 20295944 53 - 82489036 TAGTGTTAACATTAAGACAAAAGTCTTAAGTTTCTAATTTCTGATCTTGTTTG s canFam1.chr9 16560091 53 + 53642819 TGATGCAATTTATAAGACTAAAATTTTAAATTTCTAATTCCTGATCTTACTGG a score=28085.0 s hg17.chr17_random 655344 315 + 2618010 TTGGGAtttcttttttttttttttttttttttt---gagacaggtctttctctgtcatccaggctggaatgcagtggcacagtcatggcttactgcagcctcctgggctcaagttactctcccaccacagcctcccggagagctggggtggcaggcatgtgccaccacacctggctaattttttaatttttgtagagatggggttttgcaatgttccccaggctggtctcagactccaagactcaagcagtcctcctacctcagcttcccaaagtgctgggattacagatatgagccactgtgcctggccCTTGTTTG s panTro1.chr19 20295997 317 - 82489036 TTGGGAAttctcttttttttttttttttcttctatggagacaggtctttctctgtcatccaggctggaatgcagtggcgcagtcatggcttactgcagcctcctgggctcaagttactctcccgccacagcctcccggagagctgggatggcaggcatgtgccaccacacctggctaattttttaatttttgtagagatggggttttgcaatgttccccaggctggtctcagactccaagactcaagcagtcctcctac-tcagcttcccaaagtgctgggattacagatatgagccactgtgcctggccCTTGTTTG a score=7597.0 s hg17.chr17_random 655659 43 + 2618010 GATTTCTATGCTTATCTGTGAAGTATATTCTGGTTTCTATGCA s panTro1.chr19 20296314 43 - 82489036 GATTTCTATGCTTATCTGTGAAGTATATTCTGGTTTCTATGCA s canFam1.chr9 16560144 42 + 53642819 GATTTCTAAGTTTGTTTATGAAAC-TCTGCTGCTTTCCATGCA a score=51796.0 s hg17.chr17_random 655702 290 + 2618010 GGATAGATCCATTCTCAAATAAACAACCCTTAAGTATCATTAGTTCAAACTGGAGCCA-----AATAAATGTCAGCATTAGAAGGAGCAAGTGATAGTTAGCCAGCCCCTTTATTCCTTTTTAGTGCAAATCAGAGATAAAG----AACATGAAGTTTGCAGT-----GTATTTGCATTCTTTCATTTTTACATTTGTTGGTTTTGAATAATATTGAGGGGCTGTCTGATAAAGAACCTGTGTAGGTTTCCATATGGCTAT-----ATACAAAGTATATGAGCGTAGAATAGTTTTAAATTTTGTCTTA s panTro1.chr19 20296357 290 - 82489036 GGATAGACCCATTCTCAAATAAACAACCCTTAAGTATCATTAGTTCAAACTGGAGCCA-----AATAAATGTCAGCATTAGAAGGAGCAAGTGATAGTTAGCCAGCCCCTTTATTCCTTTTTAGTGCAAATCAGAGATAAAG----AACATGAAGTTTGCAGT-----GTATTTGCATTCTTTCATTTTTACATTTGTTGGTTTTGAATAATATTGAGGGGCTGTCTGATAAAGAACCTGTGTAGGTTTCCATATGGCTAC-----ATACAAAGTATATGAGTGTAGAATAGTTTTAAATTTTGTCTTA s canFam1.chr9 16560416 301 + 53642819 GGATGTATGCATTTTAAATTAAGAAATATATAAATATGATTAGCTCAAACTGGCATCAGATTGAATATATCCTTGCATTAGAAGGAACAAATGATACT--GTTAGCCCTTTTATTCCTTTTTAGTACAAGTCAGAGATAAAAAAATAACATGAAGTTTGCAGTTGTACATGCTTGCATTCTTTTACTTTCACTTTAATTGATTTTGAATGATAACAATAGAT--TCTGATAAGGAAGT----TAAACTTCCATAAGGTTATATAAAATATAAAGTATATGAGTGTATAATGGTTTTAAGAATTATCTTA a score=191.0 s hg17.chr17_random 655992 2 + 2618010 GT s panTro1.chr19 20296647 2 - 82489036 GT a score=75724.0 s hg17.chr17_random 655994 476 + 2618010 TATACTTGGTAAGTTTTAAAACGTTATTTAAATAGCCTTAAGGTGATATGGATTGCTTTAGTGACTGCTGTTTTAGGAATTTAGTTGGCTTATTG-CTGACTATAGAGGGAACGTTTTATCTTC-----------TTTTTAACCTCCAGTTCAGGTTAGGTGCCTAACCAAGTGAAACATTTTTCATAAT----ATAATGTTTAATAGTGATAATTATAAAAATAATGATGAGTTTAGTGTTTACTCTATACCAGGCACTAAGTGCATTACC---TGTTCATATAgagaacaaccgtaggcacagagagggta------tctactttaggtaataaaactgataaatgttagagccaggattcaaacccaggcggtttgga-tctagggtccatgtacttgccac-----tctattGcttgtcattaatgtaaccacaccatattgcaattatttgtttgtgtcatgtctgtactacttttcaatggaatcttaagatccttgaggg s panTro1.chr19 20296649 475 - 82489036 TATATTTGGTAAGTTTTAAAACGTTATTTAAATAGCCTTAAGGTGATATGGATTGCTTTAGTGACTGCTGTTTTAGGAATTTAGTTGGCTTATTG-CTGACTATAGAGGGAACGTTTTATCTTC-----------TTTTTAACCTCCAGTTCAGGTTAGGTGCCTAACCAAGTGAAACATTTTTCATAAT----ATAATGTTTAATAGTGATAATTATAAAAATAATGATGAGTTTAGTGTTTACTCTATACCAGGCACTAAGTGCATTACA---TGttcacatagagaacaaccgtaggcacagagagggta------tctactttaggtaataaaactgataaatgttagagccaggattcaaacccaggcggtttgga-tctagggtccatgtactttccac-----tCTATTGCCTGTCATTAATGTAACCACACCATATTGCAATTATTTGTTTGTGTCATGTCTGTACTAC-TTTCAATGGAATCTTAAGATCCTTGAGGG s canFam1.chr9 16560915 462 + 53642819 TGTACTTAGTAAGTTTTTAAACA----CTAAATAGCTTTAAGATGATATGGATTGCTTTATTGATTGT--TTTTACGAATTTAGATGACTTATTATTTGATTATAGAAGATATA-TTGGTCTTCCAAAGTTAGGTTCCCTAACCTTCAGAT-GTGTTAGGGTCTCAATCCTGTGTATCATTTTTCATAATAATGATAATGTTTCATA---ATAAAGATAAAAATAATGAAGAATTCATTG-----------ctaggaactaagtgcattacatattgcttgtatagacgacaaccttaggtacagagaggttatgtaactttactataagtcataggagtggtaact-----------catgcaaatccaggtagtttggcttctaaggtccacttgctaatcaccatAGCCTATTGCTTGTTATTGATTTTACcacaccatattgtaattatttgtttg-----tgtctacactta-ttacaat------ctaagttccctaagga a score=2049.0 s hg17.chr17_random 656470 27 + 2618010 gccgggcat-ggtagctcatggctgtaa s panTro1.chr19 20297124 28 - 82489036 GCCGGGCACGGGTAGCTCATGGCTGTAA a score=391.0 s hg17.chr17_random 656497 4 + 2618010 tccc s panTro1.chr19_random 35314171 4 - 57627672 TCCC a score=5588.0 s hg17.chr17_random 656774 140 + 2618010 ccagtaattatgattcattctttttcatttgtggttttccctggtatctgacatatagtagggatttaataaatatacattgaatgaaACGAAG--AAAATCTAGATAAATGGAGTAAGTCTGTCATAcagtagttcctcct s canFam1.chr9 16561377 127 + 53642819 cgaagagccatgattcattctttttcacctgtggtctttggtggtatctgatgtagagtaggtgttcagtaaatatttatttagtaaaATAAAGTAAAAATCTAAAGAGATGGGGT---------------TAGTCTCTCCT a score=30345.0 s hg17.chr17_random 657687 369 + 2618010 gattacaggcatgagccaccgcgcccag--ccaatatcttctttttaaaaaaaattatttca--tttatttatttttagaggcagagtctctgttgcccaggttggagtgcagtggtgccatcatatctcactgcagcctcaaactgctgggctcaagtgatcctcctgcttcagcctcccagttagctaggactataggtatgcaccaacacacccagcaaatttgtaaaaattttttgtgagtcaggtctggctttattgctgaagttggtcttgaactcctggcttcaagcgatcctcctgcctcagcctcccaaagtgccaggattacaggcatgagccactgtgcccagcctctcttatagtatctta s panTro1.chr19_random 35315285 365 - 57627672 GATTACAGGCATGAGCCAC-GCGCC-AGGGTCAATATCTTCTTCT--AAAACAATTATT-CACttttatttatttt-agaggcagagtctctgttgcccaggttggagtgcagtggtgccatcatatctcactgcagcctcaaactgctgggctcaagtgatcctcctgcttcagcctcccagttagctaggactataggtatgcaccaacac--ccagcaaatttgtaaaaattttttgtgagtcaggtctggctttattgctgaagttggtcttgaactcctggcttcaagcgatcctcctgcctcagcctcccaaagtgccaggattacaggcatgagccactgtgcccagcctctcttatagtatctta a score=35785.0 s hg17.chr17_random 658056 387 + 2618010 ttgtattatactcactcttcttctttgacatttccaaactgctagcatcactactcttgtgctttgaggccattattaagtacaataaaggttacttaaacacaagccttgtgatacattgacagtcaatctgataactgagatggctactatgtgactaatgggctgggtggcatatatatacagcatggataggtcggagaaagggatgattcatgttctgggcagaatggaatgggagggcacaagatttcatcacactattcagaacagtacagtttaaaacttatgaattgtttgtttctggaattttccatttaatattttcagactgtagttgactctaggcaattgaaactgtggaaagtgaaactgcagataaggggg s panTro1.chr19 20298815 387 - 82489036 TTGTATTATACTCACTcttcttctttgacatttccaaactgctagcatcactactcttgtgctttgaggccattattaagtacattataggttacttaaacacaagccttgtgatacattgacagtcaatctgataactgagatggctactaggtgactaatgggctgggtggcatatatatacagcatggataggtcggagaaagggatgattcatgttctgggcagaatggaatgggagggcacaagatttcatcacactattcagaacagtacagtttaaaacttatgaattgtttgtttctggaattttccatttaatattttcagactgtagttgactctaggcagttgaaactgtggaaagtgaaactgcagataaggggg a score=51508.0 s hg17.chr17_random 658443 275 + 2618010 ACTTGTCAGGTCTGCATTTCTTCATGTGCTCTATCCTAGTAAC-TTTATGGGT----AACAAAATTATTTCGTATTTGAGATTATTTTGTTACCAGCTTTAACTTGTATTTTACTTCCCTTTGAGGACTACCATCAAGATACTTACTAATTGTAAAGATTCTTTACAGTATTTTAAATATTAAGAAAATGGAGAGCATAAAAAACTGCTGTAAATTATGTAGTTTTTGCATTAAATGTAGAGAAAACACTGATTGCATAATGTTAGTAACATTGTAGTGT s panTro1.chr19 20299202 275 - 82489036 ACTTGTCAGGTCTGCATTTCTTCCTGTGCTCTATCCTATTAAC-TTTATGGGT----AACAAAATTATTTCGTATTTGAGATTATTTTGTTACCAGCTTTAACTTGTATTTTACTTCCCTTTGAGGACTACCATCAAGATACTTACTAATTGTAAAGATTCTTTACGGTATTTTAAATATTAAGAAAATGGAGAGCATAAAAAACTGCTGTAAATTATGTAGTTTTTGCATTAAATGTAGAGAAAACACTGATTGCATAATGTTAGTAACATTGTAGTGT s canFam1.chr9 16561504 268 + 53642819 ATTTGTAAAGCCTGAATTTC-TCATATGCTC-ATCCTGTTGACTTTTATGGATAACAAACAAAATTGTATTATG-TTGGGATTATTTTGTCATTAACTTTAATTTGTATTTTA-TTCCCTGTGAGGGATATAATCAAGATATTTACTAATTGTAAAGATTCTGTGCAGTGTTTTAAGCATTAAGAAAATGAAGAGCATAAAAA----TTACAAATTACGTAATTTTTAGATTAAATGGAAAAGAAAAACAGATTCCATGAT----ATAATATTGTATTGT a score=28265.0 s hg17.chr17_random 658718 309 + 2618010 ATGCTGttctttttttttttttttttt-----------gagatggagtttcgctcttattgcccaggctggagtgcaatggcatgatttcggctcgccgtaacctcagcctcccgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcatgcaccaccacagccggctaattttgtatttttagtagagatggagtttatccatgttggtcaggctggtctcgaacctccgaccacaggtgatccgcctgcctcagcctcccgcagtgctgggattacaggcacaagccgccgcgcccggcc s panTro1.chr19 20299477 320 - 82489036 ATGCTCTTCtttttttttttttttttttttttttttttgagatggagtttcgctcttatcgcccaggctggagtgcaatggcatgatttcggctcgccgtaacctcagcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcatgcaccaccacagctggctaattttgtatttttagtagagatggagtttatccatgttggtcaggctggtctcgaacctccgaccacaggtgatccgcctgcctcagcctcccgcagtgctgggattacaggcacaagccgccgcgcccggcc a score=52668.0 s hg17.chr17_random 659027 293 + 2618010 ATGTATGCTGTTCTTAAGTGTGAAGCTGGAAGAGTTAGTTGTTCTCCAAATCAATGCTTCCTTACTTT-TTTTCAAGGCATTAGTAGAAACTGATGTTTTCCTGGTACATAAGGAAGAGGAGGCTCACAACTGGAGGGTATCAGAGATCTTTCATTGCTCTAGGCCTACCAGGCTGGTCCAAGGGCCAAGGGAATTATTATCTTGATAAACCTGTAATACATGTTTGGATCTGCCACAG----TTAGGGAAGCTCTGCT----ATAGTTTCAAGTTAATAGAATTAGAAGGGAAGTTAGGTA s panTro1.chr19 20299797 293 - 82489036 ACGTATGCTGTTCTTAAGTGTGAAGCTGGAAGAGTTAGTTGTTCTCCAAATCAATGCTTCCTTCCTTT-TTTTCAAGGCATTAGTAGAAACTGATGTTTTCCTGGTACATAAGGAAGAGGAGGCTCACAACTGGAGGGTATCAGAGATCTTTCATTGCTCTAGGCCTACCAGGCTGGTCCAAGGGCCAAGGGAATTATTATCTTGATAAACCTGTAATCCATGTTTGGATCTGCCACAG----TTAGGGAAGCTCTGCT----ATAGTTTCAAGTTAATAGAATTAGAAGGGAAGTTAGGTA s canFam1.chr9 16562603 296 + 53642819 aTATATGCTCTTCTTAAATGCAAAGTTGGTAGAGTTA----TTCTCCAAATCAGTACTTCTTAACTTTCTTCCCAAGACATTCATAGAAAATTATGTTTTCTTGGTACATTGGAAAGAAGAGCCTCACAG-GGGAAGGTGACAGAAGTATCTCATTGTTCAAGTGCTATCTTGCTGACCCAAAGGCCAAGGAAA-CAGTATCTTGGCAGACCTGTAATTCATGTTTGGAGATGCCAGAGAACACTGGGAAAATTCTGCTGTAAATAGTTTTGACATATTAGCGTTACAAAGGATTTTAGCTA a score=86686.0 s hg17.chr17_random 659320 964 + 2618010 GTAGTCAGGGCTCATTTTATTTATTTGTGCCTTCTGttttactttttttttttttttgaaatggagtcttgtgctggcgtgacctcggctcactacaacctctgcctcccgggttcaagcagttctcttgcctctgcctcccaagtagctgggactacagacgcaggccaccacgcccggctaatttttgtatttttagtagagatggggtttcccatgttggccaggctggtctcgaactcctgaccttgtgatccacctgccgtggtctcccaaagtgctgggattacaggcatgagccaccgcacccagccTGTTTTACTTTTTTCTTGATCCCAGATCTTTTTCAGTTTTCTTGCTTTTTTTCTCAAAGAACTAACCATTGCTTTGTAGACCTCAGTTAACTATTATTTCCTTATTAACTTCTGCTTCCTTTGGGTTTACTTTGCAAGGttttttttttttatttttgagacggagtcttactctgtcacgcaggctggagtgcagtggcgtgatcttggctcactgcaatccctgccttctggtttcaagtgattcttatgcctcagcctcctgatagctaggattaaaggcatgtgccaccacacccagctaatttttgtatttttagtagaggcggagttttaccatgttggtcaggctggtctcaaactcctgacctcaagtgatcggttcgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcTACCGTGCCCGGTCTACTTTGCAGATTTAAAAAAACTTCTTTAggctggtcccagtgcagtggtgtttataactcatcaatcatagccagttacagatttctttattcctccttcactcccactgcttcacttgactgcccttAAAAAAAAACAAAAAACAAACAGAAGTCTTGAGATGGATGTTTGGCTTATTACTTTTCAGTCCTTCTTTCtattata s panTro1.chr19 20300090 948 - 82489036 GTAGTCAGGGCTCATTTTATTTATTTGTGCCTTCTGttttac-ttttttttttttttgaaatggagtcttgtgctggcgtgacctcggctcactacaacctctgcctcccgggttcaagcaattctcttgcctctgcctcccaagtagctgggactacagacgcaggccaccacgcccagctaatttttgtatttttagtagagatggggtttcccacgttggccaggctggtctcgaactcctgaccttgtgatccacctgccgtggtctcccaaagtgctgggattacaggcatgagccaccgcacccagccTGTTTTACTTTTTTCTTGATCCCAGATCTTTTTCAGTTTTCTTGCTTTTTTTCTCAAAGAACTAACCATT------------TCAGTTAACTATTATTTCCTTATTAACTTCTGCTTCCTTTGGGTTTACTTTGCAAGG--ttttttttttatttttgagacggagtctcactctgtcacgcaggctggagtgcagtggcgtgatcttggctcactgcaatccctgccttctggtttcaagtgattcttatgcctcagcctcctgatagctaggattaaaggcatgtgccaccacacccagctaatttttgtatttttagtagaggcggagttttaccatgttagtcaggctggtctcaaactcctgacctcaagtgatcggttcgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcTACCGTGCCCGGTCTACTTTGCAGATTTAAAAAAACTTCTTTAggctggtcccagtgcagtggtgtttataactcatcaatcatag-cagttacagatttctttattccttcttccctcccactgcttcacttgactacccttAAAAAAAAACAAAAAACAAACAGAAGtcttgagatggatgtttggcttattacttttcagtccttctttctagtata a score=3877.0 s hg17.chr17_random 660284 20 + 2618010 ttcatttaaa--tataaatttt s panTro1.chr19 20301038 20 - 82489036 ttcatttaaa--tataaatttt s canFam1.chr9 16565402 22 + 53642819 TTTATTTAAAACTATAAAATTT a score=57904.0 s hg17.chr17_random 660304 370 + 2618010 aatC--CTAAAAATGTACTGCTTTTAGCTGCAGCCCACACTTTTTTTGGTTTGTTTGTTTTGGGGGAAATTCTCCAGGCAGTAGTTATGGCTGTTGTTG---------CTTGCTGCTGCTGCTTTCCTATTTTTGTT-------GATAGCTTTGTGAGAGTACCTGTAATG-ttgacatactataaagggtacatcttaaaatatgtaatttgataagtttt--ctcatgaatgtaacc-aggtaatgagcatattcatca-ccctagaacatttcctcatgcccctttataatccttttctccccttttccttgctccttccccaggcaatta-tgatttgattccGTGTTA----ttttttttttgtacagagtctctgtcacccaggctggggta s panTro1.chr19 20301058 374 - 82489036 aatc--ctaaaaatgtactgcttttagctgcagcccacactttttttggtttgtttgttttGGGGGAAATTCTCCAGGCAGTAGTTATGGCTGTTGTTG---------CTTGCTGCTGCTTCTTTCCTATTTTTGTT-------GATAGCTTTGTGAGAGTACCTGTAATG-ttgacatactataaagggtacatcttaaaatatgtaatttgataagtttt--ctcatgaatgtaacc-aggtaatgagcatattcatca-ccctagaacatttcctcatgcccctttataatccttttctccccttttccttgctccttccccaggcaatta-tgatttgattctgtGTTGttttttttttttttgtacagagtctctgtcacccaggctggggta s canFam1.chr9 16565619 379 + 53642819 AATCTGCAGAAAACAAATCACTTTTAGCTACAGCTCACACTTTTTCTGGCTTGTTTA----GGGGAAAATTATATAGGCAGCAGCTGTGACTGCTGCTACTACAGCCCCTTGCCGCCTCATCTTTTTTTCTTTCCTTTCATTAATACAGTTTTATGAGATT-TATGTAATATTTGACATGttatata---tatatattaaaatgtataatttGGTACTTTTTGACCTATGAATacaaccaaggtaatgaacatatccatcacccccacaatgtttcctcatgcccctttgggatctagtcttccccttctcc---ccccatctccaggcaactgctgatctgctGCCAC--------ATTTTTTGATATATAATATCTTTATTAATCAGTCTAAAATA a score=39273.0 s hg17.chr17_random 660674 455 + 2618010 cagtggctctatctcaacttactgctacctccacctcccggcttaaagcaattcttgtgcctcagcctcccgagtagctgggacttcaggtgtacgccaccacacctggctcatttttgtgggtttttaTTTGTATTAATTAATTAAtttttatttatttattta----gagatggagtctcgctctgctgcccaggctggggtgtagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagcagttctcctgcctcagcctcccaaatagctgggattacaggcttgtgccaccattcctggctaattttttctatttttagtagagatggggtttcaccatgttggc-caggctggtcttgagctcctgacctcaagtgatccacatgcctcagcctccaaa-gtgctgggattacaggcatgagccaccacacctggccCACCCCCC s panTro1.chr19 20301432 460 - 82489036 cagtggctctatctcaagttactgctacctccacctcccagcttaaagcaattcttgtgcctcagcctcccgagtagctgggacttcaggtgtacgccaccacacctggctcatttttgtgggtttttaTTTGTATTAATTAATTAAtttttatttatttatttattataagatggagtctcgctctgctgcccaggctggggtgtagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagcagttctcctgcctcagcctcccaaatagctgggattacaggcttgtgccaccattcctggctaattttttctatttttaacagagatggggtttcaccatgttggcaca-gctggtcttgacctcctgacctcaagtgatccaggtgcctcagcctccaaaggtgctgggattacaggtatgcccccccacacctggccCCCCCCCC a score=106406.0 s hg17.chr17_random 661402 1186 + 2618010 gtgagccaccatgcccggccTCTTTTTTTGTTAAGATAGGGTCTTGCggttgggtgtggtggctgacgcttgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtgg-tggcgcatgcctgtagtcccccctacctgagaggctgaggcaggagaattgcttgaacccgggaggcggacggaggttgcagtgaaccgagattgcgccattgcattccagcctggacaacagagcgagactccatctcaaaaaagagggaaaaaaaaaaa-gacagggtcttgctctgtcacccaggccagagtgcagtgacaggatcgcagcttactgcaacctcaaactcctgaactcaagtgatcttcccacctcagcctcctgagtagctggaactacagatatacgctaccatggtgcctggctaattttttttagtagagatggggtcttgctttgttgcctaggctggtctcgaactcctggcttcaagggattctctcacctcagcctcccaaagtgttgggattacaggcatgagacaccgtgcctggccTGTTTTTTCTTATTACATATTTTTGTTCTAGAATTAATTTTTCCAGAtttgcttgttttctttgttttgcttggttttgggtttttttg--ggggttttgtttgtttgtttgtttttttAAAGTAACTTCGCGTTACTTGCCAAATTTTTCAGGATTGGGATTTTATATTTTTGAACATAGTAAGCAGGTATATGAATAGTTTGCTAGTATCTAGGGGAGCTTTGTTTTGTTCCCCGTTGGTTACTAATACTTAAGGTTCATCTTTTTCCAGTGTCTGGGCTTCAGATGTTCAGAAGTTTAATCACATTCCACTTGTGGACTGCTTTTCTTCTTGTTCATCTTTCCTGGTAGGATATCACTTTTTTGGTTTCAAGCCCAAAGGAGGGGGTCATTTACTCAAGCTtcttgtcttgtcttgtcttgtctCTTCTAAtagagatagagtctcactgtgctacctagatagactatgttacttaaactcctgggcttaagcagtccttccacctcgcctcccaaaatgctgggattacagacACAGTGCCCACCCAGCCA s panTro1.chr19 20302154 1180 - 82489036 GTGAGCCACCGCGCCCAGCCTCTTTTTTTGTTAAGATAGGGTCTTGCggttgggtgtggtggctgacgcttgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtgggtggcgcatgcctgtagtcccccctacctgagaggctgaggcaggagaattgcttgatcccgggaggcggacggaggttgcagtgaaccgagattgcgccattgcattccagcctggacaacagagcgagactccatctcaaaaaagaggaaaaaaaaaaaaagatagggtcttgctgtgtcacccaggccagagtgcagtgacaggatcgcagcttactgcaacctcaaactcctggactcaagtgatcttcccacctcagcctcctgagtagctggaactacagatatacactaccacggtgcctggctaattttttttagtagagatggggtcttgctttgttgcctaggctggtctcgaactcctagcttcaagggattctctcacctcagcctcccaaagtgttgggattacaggcatgagacaccgtgcctggccTGTTTTTTCTTATGACATATTTTTGTTCTAGAATTAATTTTTCCAAAtttgcttgttttctttgttttgcttggttttggtttttttttttggagttttgtttgtttgtttgtttttttAAAGTAACTTCGCGTTACTTGCCAAATTTTTCAGGATTGGGATTTTATATTTTTGAACATAGTAAGCAGGTATATGAATAGTTTGCTAGTATCTAGGGGAGCTTTATTTTGTTCCCCGTTGGTTCCTAATACTTAAGGTTCATCTTTTTCCAATGTCTGGGCTTCAGATATTCAGAAGTTTAGTCACATTCCACTTGTGGACTGCTTTTCTTCTTGTTCATCTTTCCTGGTAGGATATCACTTTTTTGGTTTCAAGCCCAAAGGAGGGGGTCATTTACTCAAGCCTCTTGtcttgtct----------cttctaatagagatagagtctcactgtgctacctagatagactatgttacttgaactcctgggcttaagcagtccttccacctcgcctcccaaaatgctgggattacagacACAGTGCCCACCCAGCCA a score=26339.0 s hg17.chr17_random 662588 171 + 2618010 CAAAGCCCCCAGTGTTGATGGGCCCTGGATTTCCACTTTT--------GTCCCTGGGGC--CTATAGCCTCAGCTTCCAAATCTGCTAC------ATCTCTGCTAGATCAGCAAATGACCCCAGAGCAAAAGTGGCCTAGAATGCAAAGCTTCCTCTTTATGGAATTTCATCCTCTTCTTCATCTTG s panTro1.chr19 20303334 171 - 82489036 CAAAGCCCCCAGTGTTGATGGGCCCTGGATTTCCACTTTT--------GTCCCTGGGGC--CTATAGCCTCAGCTTCCAAATCTGCTAC------ATCTCTGCTAGATCAGCAAATGACCCCAGAGCAAAAGTGGCCTAGAATGCAAAGCTTCCTCTTTATGGAATTTCATCCTCTTCTTCATCTTG s canFam1.chr12 2822297 171 - 75455811 CAGAATCCCCAGTTTTGGTAAAGTCTGGGCTTTAACTTTTCCCTGTCAGTCTCTAAGACGGCCAGAAGCTCAGCTT--GGTTCTGCTACTATTTTATTTTTTCTAGATCAGCAGATGACTTCAGAGCAAGAGTG--------------GCTTTCCTTCTCTGGAATCTTGTCTTTTATTTTATTTTA a score=47287.0 s hg17.chr17_random 662759 516 + 2618010 ATCACCTTATCTTGTTCTATGATTCTTTTAAGGAGAAGTTTTCCCTTCCTTCCAGCTTTTTTAGTTTTGTGGGTGTCAAGTAGGAGAGAGATAATTAGTTTGAATTATATACTCCTCTATTACCCAAATATAAAATCCTTTAAAAAAAAAAAAGATAAACTGAGACCTAGACAAATTAAGTAACCGTGTAAGACCACATAATCAATGGAAATCCTGGTCCAGAATCCTGAGTGATTTTAATGAAATAGTTCACAGTCATTTATTAAGAGCAGGGGCACCCTAGAAGGAATTTTTTGATTCTGTTGAACCAGATTTATATTTGGCACATGCTCATTCTTTTTAGACTTTTTAGATAGCCTAATAGGATAGAACCATCACTATGTTATATAAATGTGAAATCCATTTGAAAATATGGGACCTGTCAGTATAGGTACTGCTTGAACTGTAACTATGCATATATCTGATTGGCTTTTATGCCCTACGGTGAGAAGGAGGTCACCTTGAAGCTTTGCAAAG s panTro1.chr19 20303505 515 - 82489036 ATCACCTTATCTTGTTCTATGATTCTTTTAAGGAGAGGTTTTCCCTTCCTTCCAGCTTTTTTAGTTTTGTGGGTGTCAAGTAGGAGAGAGATAATTAGTTTGAATTATATACTCCTCTATTACCCAAATATAAAGTCCTTTAAAAAAAAAAA-GATAAACTGAGGCCTAGACAAATTAAGTAACCGTGTAAGACCACATAATCAATGGAAATCCTGGTCCAGAATCCTGAGTGATTTTAATGAAATAGTTCACAGTCATTTATTAAGAGCAGGGGCACCCTAGAAGGAATTTTTTGATTCTGTTGAACCAGATTTATATTTGGCACATGCTCATTCTTTTTAGACTTTTTAGATAGCCTAATAGGATAGGACCATCACTATGTTATATAAATATGAAATCCATTTGAAAATATGGGACCTGTCAGTGTAGGTACTGCTTGAACTGTAACTATGCATATATCTGATTGGCTTTTATGCCCTACGGTGAGAAGGAGGTCACCTTGAAGCTTTGCAAAG a score=64473.0 s hg17.chr17_random 663275 367 + 2618010 TAAGTTCTTGGTTCCATTTTTCACTTGAATCCCCCTTGGATATCCTCCAGAATGATGTGTTTTCTTTCCCATTGCAACATTATTTTCAGCTTTGTGGAGAAACAAAGTATGTTCCAAGTAGCAGGTAGTCACTGTAGGCCTTCTTTGAACTGTGAACTTTATTTTTTTGCACC-TGAACTGCTTTCTAAAACCACATAAACAATATGATAGGGAAGTTGCTATCTGAATAAA-AAAACAAAATAAAACCTCACAATGTGTTTGATCTAGTACTGAGCTACACTGGTATATGTGGGCTATATAGAATTATGTGGTTTAGATTACTTGTTTAAGTATAGCAGTGGCTTGGAGGAAAATACATTCTGAGTTT s panTro1.chr19 20304020 367 - 82489036 TAAGTTCTTGGTTCCATTTTTCACTTGAATCCCCCTTGGATATCCTCCAGAATGATGTGTTTTCTTTCCCATTGCAACATTATTTTCAGCTTTGTGGAGAAACAAAGTATGTTCCAAGTAGCAGGTAGTCACTGTAGGCCTTCTTTGAACTGTGAACTTTATTTTTTTGCACC-TGAACTGCTTTCTAAAACCACATAAACAATATGATAGGGAAGTTGCTATCTGAATAAA-AAAACAAAACAAAACCTCACAATGTGTTTGATCTAGTACTGAGCTACACTGGTATATGTGGGCTATATAGAATTATGTGGTTTAGATTACTTGTTTAAGTATAGCAGTGGCTTGGAGGAAAATACATTCTGAGTTT s canFam1.chr9 16568801 346 + 53642819 TGAGCTCCTGGTTTCATGTT-----------CTCCGTGTAATTCCTCCAGAATGGTGTGTTTTCTTTACCACTGCAAAACTTTTTTTTTTTTTTTTGCAAAACTATTTTGATTCCAGGTAGCAGGTGACTATTGCAAGCCTTTGTTGAAATTTGAGTTCTTTTTTATTGCACCATGAGCTCGTATCTAAAAC-----------TATGATAGGTAGGTTGCCATCTAAATAAATGAAACAAAACAAAATTTCATCACTTATTTCATGTAGTATTGAACAACACAGGCATTTGTGGGTTGTCTGGAGTTATGTGGGCTAGATTGCCTG-TTATATACAGCTGTGGCTTAGAGGAAATGACATTCTGAGTTC a score=45236.0 s hg17.chr17_random 663642 276 + 2618010 CAAATAGATAATTTGTAAAGGAAAATTTGAAGTACAGTTGACTTGGCACTTCTGATATTGAAATTTTAGAAGATTTTATTTCTGTATCTCAATGTAATGCCTAGGCAGAATCCACTAGATGCTTGTATAGATGGTATAAGCAATAATGATTTCAGCT-ATTTTAAAAA----------ATTTCAATCTTTTT-TTAATGTTGCCTCTTGAAATACCATCTTGTACTTCTCAT-----------TTTCCCTATACCTCCTTTTATGTGATTAAGTTTTATTATGTATAGACATAAAGGGg s panTro1.chr19 20304387 276 - 82489036 CAAATGGATAATTTGTAAAGGAAAATTTGAAGTACAGTTGACTTGGCACTTCTGATATTGAAATTTTAGACGATTTTATTTCTGTATCTCAATGTAATGCCTAGGCAGAATCCACTAGATGCTTGTATAGATGGTATAAGGAATAATGATTTCGGCT-ATTTTAAAAA----------TTTTCAATCTTTTT-TTAATGTTGCCTCTTGAAATACCATCTTGTACTTCTCAT-----------TTTCCCTATACCTCCTTTTATGTGATTAAGTTTTATTATGTATAGACATAAAGGGg s canFam1.chr9 16570105 289 + 53642819 CAAATGGACCATTTGCAAAAGAACTTTTGAAGTACAATTGAATTAGAACTTGTGTTATTAGAATTTTTAGAAGTTGTGTGTTTGTATCTCAGTATAATACCAGAGCAGAATCTATTAGAAGCTTGTGTAAATGATGTAGGCTATAACAACTTAGGCTGACTTTATATATTTTTTTCCTATTTCAATCTTTTTAAAAATGTAGACTTCTGAG---------TATACTTTTTTTAAAAAGTGGCCTTTCTCTGTACTTCCGTTCCTGTGACTAAATTTCA-TATGCTTAAACATAAAAAGG a score=118913.0 s hg17.chr17_random 663918 1289 + 2618010 gcctggcacagtggctcatgcctgcaatcccagcattttgggaggccaaggcacaaggattgcttgagcccaggagttcaagacaagcctacgcaatgcagtgagaccctgtctcaaacaaaaaaaaaaaaaAAAAAAAAAAAGGTT--GGGGAGGGTGCtatgatattatgatacatatgttggttttcatccacagtttctgtcatagaacacccatagtccctgttatttcctaagtgactaaaacaatatacatatattttattgaaatatttggccttttattcttggtttttgaAGTGGCTTCAGTACAGCTTCAGATCAATAAAAGTGAAAGATGgtcttttgtaataacgttggggcactttaaacctcagaagcaggcttcagaaaacagaatcgctctctgaccttttcttgccttgcttttacctgctcctttttctccccaagcaggcaatagaaactaaaaatatactctgatcatcccccaacattctgtcttggagctgacagcaaagaaattatctgacctaccttgtctgattggaggtcataagacccccatttcagaaggcatcctgccctgtacttgggaggaaagaagttgcacagagaggccaagaagactctgaacagagaggccttgctaggtttccccactcagtctgttagcattaggtcctac-tttgtccaatcatatttctacccggttgtccatgcttcagtcgtgacggtccagtgaagtcctggaccgggtacagagagcttccagatagctgaacacgtggagggtcctggagggtggtgcacccagggagggtatgagagctctgcaccccttcccacatgccttgttctgtgcacctcttcatctgcattctttgtgctattctttataataaaccagtacacgtgttttcctgagttctgggcacagctttagcaaattaatcaaacctaagaagggggtcatgggaacactgacttgaagctggttggccagaagttctggatgaggcctggccttacaactagtgtctgaagtgggggcagtcttgtgagactgagccctctctcagcctgtgggatctaatgctatctccaggtagatagcatgagaattgaattggattagaaggtgctcagctggtggtatcttctgcagaactgattgcttcttgttggtggggagaaatccccacacatttggtcacagaagtctactgtgttgatgattgtggtgtaagagcagaggaaaagcaatttgaTTTTTCTCCACAAGGGGA s panTro1.chr19 20304663 1285 - 82489036 gcctggcacagtggctcatgcctgcaatcccagcattttgggaggccaaggcacaaggattgcttgagcccaggagttcaagacaagcctacgcaatgcagtgagaccctgtctcaaac-------aaaaacaaaaaaaAAAAGGTTTGGGGGGGGGTGCtatgatattatgatacatatgttggttttcgtccacagtttctgtcatagaacacccatagtccctgttatttcctaagtgactaaaacaatacacatatattttattgaaatatttggccttttattcttggtttttgaAGTGGCTTCAGTACAGCTTCAGATCAATAAAAGTGAAAGATGgtcttttgtaataacgttggggcactttaaacctcagaagcaggcttcagaaaacagaatctctctctgaccttttcttgccttgcttttacctgctcctttttctccccaagcaggcaatagaaactaaaaatatactctgatcatcccccaacattctgtcttggagctgacagcaaagaaattatctgacctaccttgtctgattggaggtcataagacccccatttcagaaggcatcctgccctgtacttgggaggaaagaagttgcacagagaggccaaggagactctgaacagagaggccttgctaggtttccccactcagtctgttagcattaggtcctacttttgtccaatcatatttctacacggttgtccatgcttcagtcgtgacggtccagtgaagtcctggaccgggtacagagagcttccagatagctgaacacgtggagggtcctggagggtggtgcacccagggagggtatgagagctctgcaccccttcccacatgccttgttctgtgcacctcttcatctgcattctttgtgctgttctttataataaaccagtacatgtgttttcctgagttctgggcacagctttagcaaattaatcaaacctaagaagggggtcatgggaacactgacttgaagctggttggccagaagttctggatgaggcctggccttacaactagtgtctgaagtgggggcagtcttgtgagactgagccctctctcagcctgtgggatctaatgctgtctccaggtagatagcatgagaattgaattggattagaaggtgctcagctggtggtatcttctgcagaactgattgcttcttgttggtggggagaaatccccacacatttggtcacagaagtctactgtgttgatgattgtggtgtaagagcagaggaaaagcaatttgaTTTTTCTCCACAAGGGGA a score=19093.0 s hg17.chr17_random 665207 92 + 2618010 AGAAAATGTTTCATGATTCAACTAATGATTTACCTTTCATTGTAAGGTTATCATGCTCAAGTATTAATGTAGGAAGG-CTTTTTTGATGCAGA s panTro1.chr19 20305948 92 - 82489036 AGAAAATATTTCATGATTCAACTAATGATTTACCTTTCATTGTAAGGTTATCATGCTCAAGTATTAATGTAGGAAGG-CTTTTTTGATGCAGA s canFam1.chr9 16570394 93 + 53642819 GAAAAAGATTTCATGTCTCAATTAATGGTTTACCTTTCAGTGCATGATTATGATACTCAAATATTAATATAGGAAGATTTTTTTTGATGGAGA a score=33683.0 s hg17.chr17_random 665299 385 + 2618010 gtgtgtgtgtgtgtgtgtgtgtatatacgtgtgtgtttgtAGAGGGCTAACATTAAAAAGGGAAATGTAATAAGGAAGAAGAAATGGTGTTCTAAACTTAAAACCCATTTCATCTGCTAAATCGTCCTAGTGAAATACCAACTTTAGTTAATTTTAAAAAAAGTTTAGTTAATTGT---AAAAAAAAAAAGAATCTCTTCATTATATTTTAAAAACCATTTATGTTTCCTTTTTCTGTAATTTATTCATATTTGTCCATTTTAAATTTCAGTGTTATTCTTATTCTTGTTATTGATTTTTTAAAACGTGGTCTTTATATTTGAGTGAAATTAACCTTCCATCATGAGTTGGAGCATTTTTTCCCCAATATATACTTCTCTTTTGATTT s panTro1.chr19 20306040 384 - 82489036 ----gtgtgtgtgtgtgtgtgtatatatgtgtgtgtttgtAGAGGGCTAACATTAAAAAGGGAAATGTAATAAGGAAGAAGAAATGGTGTTCTAAACTTAAAACCCATTTCATCTGCTAAATCGTCCTAGTGAAATACCAACTTTAGttaatttaaaaaaaagtttagttaattgtaaaaaaaaaaaaaaGAATCTCTTCATTATATTTTAAAAACCATTTGTGTTTCCTTTTTCTGTATTTTATTCATATTTGTCCATTTTTAATTGCAGTGTTATTCTTATTCTTGTTATTGATTTTTTAAAACGGGGTCTTTATATTTGAGTGAAATTAACCTTCCATCATGAGTTGGAGCATTTTTTCCCCAATATATACTTCTCTTTTGATTT a score=3205.0 s hg17.chr17_random 665684 33 + 2618010 TGCTTATGGTCATTT----TATAATGCCATGGTTTTt- s panTro1.chr19 20306424 33 - 82489036 TGCTTATGGTCATTT----TATAATGCCATGGTTTTT- s canFam1.chr9 16579624 32 + 53642819 TGTTTCTAGTAGTTTTGAGTATAA------GATTTTTC a score=29281.0 s hg17.chr17_random 665717 311 + 2618010 tttgttgtttgtt--ttttttttttttttttgagacggagtctcgctctctcagccaggctggagtgcagtggcgtgatctcagctcactgcaacctccacctccccgtttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgtgcaccaccacgcctggctaatttttgtatttttagtagtaatggagtttcaccatgttggacaggctggtctcagactcctgacctcaggtgatctgcccatcttgacctcccaaagtcctgggattacaggcatgagccaccatgcccagcc s panTro1.chr19 20306457 313 - 82489036 TTTGTTGtttgtttgttttttttttttttttgagacggagtctcgctctctcagccaggctggagtgcagtggcgtgatctcagctcactgcaacctccacctccccgtttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgtgcaccaccacgcctggctaatttttgtatttttagtagtaatggagtttcaccatgttggacaggctggtctcagactcctgacctcaggtgatctgcccatcttgacctcccaaagtcctgggattacaggcatgagccaccatgcccagcc a score=40365.0 s hg17.chr17_random 666028 243 + 2618010 TGGTCATGGTTTTATACATGCTATGTTTATAATCAAATTTTACTTCTATTTAATAGATGACTAACAC--ACTTACACATAG----------ATGCTTATACCCAAATATATATGTTT------ATAGATTTTAAAATGCTAATTATATTTAAAAGG---------CCTAATAAGTAG--------------TTTCAGCAAAAGCTGTTATATATATGTATATAATGGACCAATTGC-AGTTGGATCAATAAAGAACTGTA--AGGTGTGTTATGATCTAGAAAAGTG s panTro1.chr19 20306770 244 - 82489036 TGGTCATGGTTTTATACATGCTATGTTTATAATCAAATTTTACTTCTATTTAATAGATGACTAACAC--ACTTACACATAG----------ATGCTTATACCCAAATATGTATGTTT------ATAGATTTTAAAATGCTAATTATATTTAAAAGG---------CCTAATAAGTAG--------------TTTCAGCAAAAGCTGTTATATATATGTATATAATGGACCAATTGCAAGTTGGATGAATAAAGAACTGTA--AGGTGTGTTATGATCTAGAAAAGTG s canFam1.chr9 16579656 282 + 53642819 TTGTCACAAATTTATATATACTTTGGTTACATTCAAGTTTTGCTTCTATTTGGTATACTGCTAACATAAACATACACGCAAGCATGTGCACATGCTTATACCCAAATGTGTGTATTTATATCCATAAATTTGAAAATAGTAATTATACTTAAAAGAATTTTTTTTTCTGAAATGTAGCACTCCCTTAGTGATTTCAGCATGAGCC-TTATGTATACATATATAATGGATTAGTTGC-AGTTAGATTAATAAAGGATTGTATTAGATATATT---ATCTAGAAAGGAG a score=29060.0 s hg17.chr17_random 666271 312 + 2618010 Attc---ttttttttttttgagatggagtcttgctctgttgcccatgctggagtgcagtggcacgatctcggctcactgcaagctccgcctcccgagttcacgccattttcctgcctcagcctcctgggtagctgggactacaggcacgtgccaccacacccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccgccctccttggcctccagaagtgctggtattacaggcgtgagccactgctcccggccCTGAAAAATGTTTCT s panTro1.chr19 20307014 315 - 82489036 tttctttttttttttttttgagatggagtcttgctctgttgcccatgctggagtgcagtggcacgatctcggctcactgcaagctccgcctcccgagttcacgccattttcctgcctcagcctcctgggtagctgggactacaggcacgtgccaccacacccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccgccctccttggcctccagaagtgctggtattacaggcgtgagccactgctcccggccCTGAAAAGTGTTTCT a score=9395.0 s hg17.chr17_random 666583 54 + 2618010 TAACAATAActaggaactgtgctgtgtgttttatataagagtatattatataat s panTro1.chr19 20307329 54 - 82489036 TAACAATAACTAGGAACTGTGCTGTGTGTTTTATATAAGAGTATATTATATAAt s canFam1.chr9 16579953 53 + 53642819 TAattatgaccagacactgtgctaagcattttacat-agacaatgttgtataat a score=19333.0 s hg17.chr17_random 666637 215 + 2618010 tttttttttctttgagatggagtctcactctgttgcccagactgagtgcagtggtgcgatctcagctcactgcagcctctacctcccaggttcaagcgattctcctgcctcagcctcccaagtagttgggattacaggcgcacgccaccatgccctgctaatttttgtatgtttagtttta-ccatgttggccaggctggactcaaactcctgacc s panTro1.chr19 20307383 215 - 82489036 tttttttttctttgagatggagtctcactctgttgcccagactgagtgcagtggtgcaatctcagctcactgcagcctctacctcccaggttcaagtgattctcctgcctcagcctcccaagtagttgggattacaggcgcacgccaccatgccctgctaatttttgtatgtttagttttacccatg-tggccaggctggactcaaactcctgacc a score=18183.0 s hg17.chr17_random 666885 201 + 2618010 gctgggattacaggtgtgagccaccgtgcctggcccccaatctttaattaagaagcaggtgccaggcacaatggtatactcctataatctcagctactcaggaggctgaggtgggaggattgccagtgcttgagcccaggagtttgagaccagcctgaacaacatagtgagacccttatctcaattttaaaaagaaagaat s panTro1.chr19 20307705 201 - 82489036 gctgggattacaggtgtgagccaccgtgccgggccCCCAATCTTTAGGTACGAAGCAGGTgccaggcacaatggtatactcctataatctcagctactcaggaggctgaggtgggaggactgccagtgcttgagcccaggagtttgagaccagcctggacaacatagtgagacccttatctcaattttaaaaagaaagaaT a score=13367.0 s hg17.chr17_random 667086 84 + 2618010 taggtaatgatatgattttaattttataggtgtggaaacggaggcttagagaattgaataaTCATATATAC---------------CTTATAAGATTCT s panTro1.chr19 20307906 84 - 82489036 TAGGTAATGATATGATTTTAATTTTATAGGTGTGGAAACGGAGGCTTAGAGAATTGAATAATCATATATAC---------------CTTATAAGATTCT s canFam1.chr9 16580024 88 + 53642819 taggtaatg-----------attttatatgtgtgaagagagaggctcagaTTGTTGAATAGCCATATATTCTCTCCTATTCTCCCACTTAAAAAATGCT a score=2902.0 s hg17.chr17_random 667170 31 + 2618010 CTCATACTCCATTTTTAAAAGTTTTCGATCA s panTro1.chr19 20307990 31 - 82489036 CTCATACTCCATTTTTAAAAGTTTTCGATCA a score=12242.0 s hg17.chr17_random 667201 78 + 2618010 AGTTTAAGTT------------------GTATTGATACACGATATATAGTGAAGTGTCTATGTACAATGCTTAATTTAC--ATATATACATTTccaat s panTro1.chr19 20308021 80 - 82489036 AGTTTAAGTT------------------GTATTGATACACGATATATAGTGAAGTGTCTATGTACAATGCTTAAGTTACATATATATACATTTccaat s canFam1.chr9 16580911 94 + 53642819 AGGTTAAGTTTGATCAAGTTTAATTGTAACATTTATAAATG--ATATAGTAAAATGTCTACTTATAATGCTTAATATAC--ATATATGCATTCTAAAT a score=73887.0 s hg17.chr17_random 667279 791 + 2618010 tatgaatatattgcaaactgtattagtgaatgaattattcatttatcatatcagtattatatattactataatatataaatatactaattatatattagtattaatgtaaacattaatttagaaatacttttttctccagtgaagcctcctcagacttctcatatgcatcttcagtatttatgggtttctaccctttaaacaatctaacagttccagagcaaatattatcttctaagaggtttgagatagatccttatttgaatcagtatattatgttgtgactggaaattttatccctagccatgtctctattcacataacattagtaaatgtgatttttcattaatatatttcatatgagtagcattaatgatctccatgacataattacttagtctgttgcttttgaagtgattcattcattctacagatacttactgaacacacactatgtgccagaaactgctagcattggaagtagagctgtgaacaaaatcaagcatcaacatttctgatatttgagaagacaggcaacaagcaaatatgtgatgtaaagtagtgataagtgctgtaaaatcacaagagggtatagaatgaggattgttcttcaagttgatagaacagatctttaaagaagtgatttgaggctgggcgtggtggcttacacctgtaatcccaacactttgggaggccgaggcgggtggatcatgaggtcaagagactgagaccatcctggccaacgtgctgaaactccgtctctactaaaaatacaaaaattagccaggcgtgg s panTro1.chr19 20308101 791 - 82489036 tatgaatatattgcaaactgtattagtgaatgaattattcatttatcatatcagtattatatattactataatatataaatatactaattatatattagtattaatgtaaacattaatttagaaatacttttttctccagtgaagcctcctcagacttctcatatgcatcttcagtatttatgggtttctaccctttaaacaatctaacagttccagagcaaatattatcttctaagaggtttgagatagatccttatttgaatcagtatattatgttgtgactggaaattttatccctagccatgtctctattcacataacattagtaaatgtaatttttcattaatatatttcatatgagtagcattaatgatctccatgacgtaattacttagtctgttgcttttgaagtgattcattcattctacagatacttactgaacacacactatgtgccagaaactgctagcattggaagtagagctgtgaacaaaatcaagcatcaacatttctgatatttgagaagataggcaacaagcaaatatgtgatgtaaagtagtgataagtgctgtaaaATCACAAGAGGGTATAGAATGAGGATTGTTCTTCAAGTTGATAGAACAGATCTTTAAAGAAGTGATTTGAggctgggcgtggtggcttacacctgtaatcccaacactttgggaggccgaggcgggtggatcatgaggtcaagagactgagaccatcctggccaacgtgctgaaactctgtctctactaaaaatacaaaaattagccaggcgtgg a score=108461.0 s hg17.chr17_random 668170 1238 + 2618010 ccagcctgggcgaca-gagcaagactcc-atctcaaaaaaaaaaaaagatgattcgaggcttcg-tgtggtggttcatgcctgtaatccctgcactttgggaggctgaggcaggaggatcgcttgagctcgggagtttgaggccagcctgggcaacatggtgaaaccccatgtctataaaaaatacaaaaattagtcgggtgtgatggtgggcgcctgtagtcccagctatttgggaggctgaggtgggaggaacacttgaacctgagaggtcaaggttgcagtgagccaagatggcagcactgtactcc-aggttgggcaacagagtgagaccctgtctcaaaaaaaaaaaaaaaa-gtgatt-tgagcagaggcctgaatgacataaagtgtttagatatctggaga----ctttgcaagcagatgcagaaaccctggggttggaaaatgcttacagtctgaatagtaaaagaggcAccaccagcatgacttctagttattgtgctacaccctgcacattttttttt-ctttttcgagacagggtctcactctgtcacctagatgggagtgcagtggcatgttcatggctcactccagcttcaacctcctaggcttcagcaatgctcttgcctcagcctttggagtagctgggaccacaggtttgtgtcaccacgtatgactaatttttttttatttttcc-tgtgttgcc-caggttggttttgaactcc-tgggttc-aggtgatcctcctgccttggcctcccaaagtgctgggattccaggcaagagccaccatgcctggccctgggcaacatttttattgtcagtcatttaatagcctagtctaatggatgtgtagtg-atatgtcattgtgattttaatttgcctttccttaatggctaatgatgctgaacacttttttatgtgcttttttttttttttt--gccatttataaattttcctttgtgaagtttaagtcttgccatttttaaattgggttgtttacctttttattcaacagctgtaggttttttgtttttttttttttg-atacagagtctcactctgtctccaggctgtagtgcagtggcacatcttggctcactgcaacctccgttcccaggttcaagtgattctcctgcctcagcctcccaagtagctgagataacaagcatgcaccaccacgcatggtccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagcc s panTro1.chr19 20309204 1255 - 82489036 ccagcttgggcggcaagagcaggactcccatctcaaaaaaaaaaaaaaaagaTTCGAGGCTTCGATgtggtggttcatgcctgtaatccctgcactttgggaggctgaggcaggaggatcgctggagctcgggagtttgaggccagcctgggcaacatggtgaaaccccatgtctataaaaaatacaaaaattagtcaggtgtggtggtgggcgcctgtagtcccagctatttgggaggctgaggtgggaggaacacttgaacctgagaggtcaaggttgcagtgagccaagatggcagcactgtactcccaggttgggcaacagagtgagaccctgtctcaaaaaaaaaaaaaaaaaGTGATTAtgagtagaggcctgaatgacataaagtgtttagatatctggagaaacactttgcaagcagatgcagaaaccctggggttggaaaatgctta--gtctgaatagtaaaagaggcAccaccagcatgacttctagttattgtgctacaccctgcacattttttttttctttttcgaaacagggtctcactctgtcacctagatgggagtgcagtggcatgttcatggctcactccagcttcaacctcctaggcctcagcagtgctcttgcctcagcctttggagtagctgggaccacaggtttgtgtcaccacgtatgactaatttttttttatttttccgtgtgttgccacaggttggttttgaactccgtgggttcgaggtgatcctcctgccttggcctcccaaagtgctgggattccaggcaagagccaccatgcctggccctgggcaacatttttattgtcagtcatttaatagcctagtctaatggatgtgtagtgtatatgtcattgtgattttaatttgcctttccttaatggctaatgatgctgaacacttttttatgtgctttttttttttttttttgccatttataaattttcctttgtgaagtttaagtcttgccatttttaaattgggttgtttacctttttattcaacagctgtaggTtttttttttttttttttttggatacagagtctcactctgtctccaggctgtagtgcagtggcacatctcggctcactgcaacctccgttcccaggttcaagtgattctcctgcctcagcctcccaagtagctgagataacaggcatgcaccaccacgcatggtccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagcc a score=8457.0 s hg17.chr17_random 669408 35 + 2618010 CAGAAAGGAACATTCTTAAGCATTGAAGTGATTCT s panTro1.chr19 20310459 35 - 82489036 CAGAAAGGAACATTCTTAAGCATTGAAGTGATTCT s canFam1.chr9 16583309 35 + 53642819 CAGGAAGGTACATTCTTGAGCATTAAGGTGATTCT a score=5193.0 s hg17.chr17_random 669443 28 + 2618010 TGTCAAATTT--GATTTCTATTCAAATTTA s panTro1.chr19 20310494 28 - 82489036 TGTCAAATTT--GATTTCTATTCAAATTTA s canFam1.chr9 16583455 30 + 53642819 TGCCAAGTTCTGAGTTTCTTTTCAAATTTA a score=29039.0 s hg17.chr17_random 669471 310 + 2618010 GGAGCTGggccaggcacggtggctcagccctgtaatcccagcacttcgggaggctgaggtgggtagattgcctgaatccaggagtttgagaccaggctggacaacctggggaaacccctgtctctactaaaaatacaaaagattagatgggcctagtggcacctcacgcctgtagtccccagctaccccggaggctgaggtgggagaatctcccgaacctgatgggaaaggtagcagtgagttgagatagtgccactgtactccagcctgggcaacaaagtgagaccctgtctcaaaaaacaaaacaaaa s panTro1.chr19 20310522 310 - 82489036 GGAGCTGggccaggcacggtggctcagccctgtaatcccagcacttcgggaggctgaggtgggtagattgcctgaatccaggagtttgagaccaggctggacaacatggggaaacccctgtctctactaaaaatacagaagattagatgggcctagtggcacctcacgcctgtagtccccagctaccccggaggctgaggtgggagaatctcccgaagctgatgggaaaggtagcagtgagttgagatagtgccgctgtactccagcctgggcaacaaagtgagaccctgtctcaaaaaacaaaacaaaa a score=1478.0 s hg17.chr17_random 669781 11 + 2618010 CCAAACAAATT s panTro1.chr19 20310832 11 - 82489036 CCAAACAAATT s rn3.chr10 24735592 11 - 110733352 CTGCTTAAATT a score=39413.0 s hg17.chr17_random 669792 158 + 2618010 TAGGAGCTAGCTTGTGATTGTAGAAATAATTTTGGCAAtagaagtgaggga---actgagttgtagtctagctagttaacatgtgacaaaccattaactttat-----atgtctcattttcttcatctgtaaaatgaggaagatttgattagaggatttattaaag------ s panTro1.chr19 20310843 158 - 82489036 TAGGAGCTAGCTTGTGATTGTAGAAATAATTTTGGCAAtagaagtgaggga---actgagttgtagtctagctagttaacatgtgacaaaccattaactttat-----atgtctcattttcttcatctgtaaaatgaggaagatttgattagaggatttattaaag------ s rn3.chr10 24735603 163 - 110733352 TAGAAGAAATTTTATGATAGCAAAAAGCATCTTAGAAATAGATACAAGAAGACTACTGACTTCTAGTTTAGCCATGCAGTCTTCATCAAATCCTTAACTCTGTTTTTCATTTTCCATTTTCCTTATC--TACAGTGAGGAAGCTTTACTCAGAGGA-TTGCTGAAA------ s canFam1.chr9 16583485 154 + 53642819 TAGGAGCTAATTTATGATGGTAGAAAAGATTTTGGCAAT--------ggga---actgaattctagtccagctatatgaatgtaggcaaatcattaactttat-----atatctcattttcttcatctgta-aatgaggaataattgattaaagtt-cttttaaaatctgag a score=54596.0 s hg17.chr17_random 669950 342 + 2618010 ttcttttaaaatctgaaatt-ACAGTTTCTTAATTGGTTTTGTAGAGATTTTGGCTTTATAA--AAATGTGTGAACCATAGTGACAGCAGAAACA--TTTGAAATCCTATATTTGGGTGATTCATAAAAGAAAGGAAGAATTATGGGCATCTTGCCT-----GTAAAATGTTATGTAATCTGAATCATTGTTACCCACAGC-------ATCCTGTGACTGATAAAGGTACTCATGGCCACCTCTCCTCCCTTGTCTTTCTGTAGTACTTTCCTTTCTCCCCACCTCAAtaatagctttattgatgtataattcacataccatacatgtcatctattaatatttaaagcatacaattcag s panTro1.chr19 20311001 342 - 82489036 ttcttttaaaatctgaaatt-ACAGTTTCTTAATTGGTTTTGTAGAGATTTTGGCTTTATAA--AAATGTGTGAACCATAGTGACAGTAGAAACA--TTTGAAATCCTATATTTGGGTGATTCATAAAAGAAAGGAAGAATTATGGGCATCTTGCCT-----GTAAAATGTTATGTAATCTGAATCATTGTTACCCACAGC-------ATCCTGTGACTGATAAAGGTACTCATGCCCACCTCTCCTCGCTTGTCTTTCTGTAGTACTTTCCTTTCTCCCCGCCTCAAtaatagctttattgatgtataattcacataccatacatgtcatctattaatatttaaagcatacaattcag s rn3.chr10 24735766 229 - 110733352 CTCCTTCATAGTCCGAACTTAACTGTTTT----TTGGCTTTGTAAAGGTTTTAGTTTTACAC--ACACGTATGAACCATAGTGATAATACAGACATGTTTGTAATTCTG---CTAGCCGACTTAAAGCACATAAGG------GTGTGGCTCATGCCT-----GTAGG--TACACCTAACCTGA---------AACTGCAGG-------AGTGC-TGCCTCATGAAGTCATTCAT-------------------------------------------------------------TTTAAGAATGAATAAGGTAC------------------------------AACCTATGTTTCAG s canFam1.chr9 16583836 303 + 53642819 TTCTTTTAAAATCTGAAATT-ATAGTTTTTTA-TTGGTTTTGTAAAGA-TTTAGCCCTATAAATACATGTTTGAACCATAATGGTATTAGAAACC--TTGAAAATTTAATATTAGGGTGATTCATAAAAAGAAATT--GATTGTGGGCATCTTGCCTAGCTCATAGGATGTTATTAAATCTGAATCACTGTTATGCATATCAAATTTAAGCCCATGACTAATAAAGCTACCTTT-------------------------------------------TTCTCTTTTaataacagtttcattgagatacaattcacataccatacaattcatt------cacttaaagtgtacaattcag a score=14066.0 s hg17.chr17_random 670292 103 + 2618010 cggtttttagtctatttacaga-gttgtacagccatcatcacaatcaattttagaacactttctgaactccagaaagaaagtaccc------------tgcctatttcccctctat s panTro1.chr19 20311343 103 - 82489036 cggtttttagtctatttacaga-gttgtacagccatcatcacaatcaattttagaacactttctgaactccagaaagaaagtaccc------------tgcctatttcccctctat s rn3.chr10 24735995 107 - 110733352 C----TTTAGATTGTCCTCAGGCTTTGTGTGACCATCAACAGACCCAATC----AACAC-TTCAAAGCTCCAAGAAGAAAGTACTCATTAGAAGTCATTGCCCATGTCCCCTCAAT a score=873.0 s hg17.chr17_random 670395 9 + 2618010 cacctagcc s panTro1.chr19 20311446 9 - 82489036 cacctagcc a score=8346.0 s hg17.chr17_random 670404 100 + 2618010 ctaggcaactatgaatctactttcagcctccatagattgccctgttatggacaaatatgtggctggtttcttagtataatgttttcaaggttatttacgt s panTro1.chr19 20311455 100 - 82489036 ctaggcaactatgaatctactttcagcctccatagattgccctgttatggacaaatatgtggctggtttcttaggataatgttttcaaggttatttacgt s canFam1.chr9 16584437 39 + 53642819 tttggctactatga-------------------------------------------------------------ataatgcttctatgaacatttgtgt a score=0.0 s hg17.chr17_random 670504 40 + 2618010 tgtagcatgtgtcagctatttcatttctttttattgtcaa a score=2447.0 s hg17.chr17_random 670504 26 + 2618010 tgtagcatgtgtcagctatttcattt s panTro1.chr19 20311555 26 - 82489036 tgtagcatgtgtcagctatttcattt a score=2255.0 s hg17.chr17_random 670530 14 + 2618010 ctttttattgtcaa s panTro1.chr19 20311581 14 - 82489036 ctttttgttgtcaa s rn3.chr10 24736394 14 - 110733352 CTGTTCATTGCTGA a score=27562.0 s hg17.chr17_random 670544 277 + 2618010 ataacattcagttgtatggata-taccacgttttatctattccatcagttgatggacatttg-----agttgttttcattttgggattattataaataatgctact---atgaacatttgtatacaaacattatgtggacatgtgttttcatttctct-tggacatatacttaggaatgggattgctgtatc----acatgatacctctgtatttaaccttttggggaattgccaaactgttttccaaaagtggctgcacca-tttacat-tccca----------------------ctatcaatata--t----gctcc s panTro1.chr19 20311595 277 - 82489036 ataacattcaattgtatggata-taccacattttatctattccatcagttgatggacatttg-----agttgttttcattttgggattattataaataatgctact---atgaacatttgtatacaaacattatgtggacatgtgttttcatttctct-tggatatatacttaggaatgggattgctgtatc----acatgatacctctgtatttaaccttttgaggaattgccaaactgttttccaaaagtggctgcacca-tttacat-accca----------------------ctagcaatata--t----gctcc s rn3.chr10 24736408 265 - 110733352 ATAACAATTGATTT--TGGACACTACCACATTTTATCTATT-CATTAGTT-ATGGACAGTCAATGACAGAAGCCCT-ACATTGGAGCCATTATAATTGTGGTCATTTACATGTCTTTGTGTAGACAGAGAGAGCGGGAGAA------------------TGAAAACACTCATGGGAATGTGATTGCC-CACCATAAATAAGGCAACTGTGTGTTTAACCTTTTGATGAAGTAATAAACTGTCTACTCGGTG----TGCACC--CTTACATATTCTT----------------------CCAGCAATGTACCT----GCTCT s canFam1.chr9 16584476 250 + 53642819 ataagtttc---tgtgtggaca-tac-----------------------------------------atttttatttctcttgga-----tatatctatatctcct-agatatctatatctatatatctat---------atctatatctatctatctatatatatgtatataggagagggatttctgggtc----ttatggtaagtcta---ataatcatatgaggaacttccgggctgttttcctaa-gtggctgcaccattttacat-tcctattagcctctgcgttcctaccagccaaccatgta--tgagggttcc a score=6389.0 s hg17.chr17_random 670821 26 + 2618010 agtttctctacatcctACCTTATACt s panTro1.chr19 20311872 26 - 82489036 agtttctctacatcctACCTTATACt s canFam1.chr9 16584726 26 + 53642819 aatttctttacatccttccttatact a score=28678.0 s hg17.chr17_random 670847 310 + 2618010 ttttttttttttt--ctttttttgagacagagtctcgctctgtcgcccaggctggagtacagtggcacaatctcggctcactgcaacctccgcctcctgagttcaagcaattctaaattatcatgcctcagcctcccgcatagctgggattagaggcgtttgccaccatgcctggctaagttttatatttttagtaaaaatggggtttcgccatgttggccaggctgttctcgaactcttgacctcaggtgatccacacgcctcgtcctcccaaaatgctgggattataggtgtgagccaccatgtccggcc s panTro1.chr19 20311898 312 - 82489036 tttttttttttttttctttttttgagacagagtctcgctctgtcgcccaggctggagtacagtggcacaatctcggctcactgcaacctccgcctcctgagttcaagcaattctaaattatcatgcctcagcctcccgcatagctgggattagaggcgtttgccaccatgcctggctaagttttgtatttttagtaaaaatggggtttcgccatgttggccaggctgttctcgaactcttgacctcaggtgatccacacgcctcggcctcccaaaatgctgggatcataggtgtgagccaccatgtccggcc a score=2647.0 s hg17.chr17_random 671157 16 + 2618010 --TGATTGGCCAGCTTTT s panTro1.chr19 20312210 16 - 82489036 --TGATTGGCCAGCTTTT s canFam1.chr9 16584752 18 + 53642819 tagtattatctagctttt a score=11225.0 s hg17.chr17_random 671173 63 + 2618010 CATTTGGAATGGGGATAGGACATAGTTGGAAGTTGGTGT-CTTTGGTTATTTCCCTAACATGTC s panTro1.chr19 20312226 63 - 82489036 CATTTGGAATGGGGATAGGACATAGTTGGAAGTTGGTGT-CTTTGGTTATTTCCCTAACATGTC s canFam1.chr9 16584892 64 + 53642819 CTTCTGGGATGTGAATGTGATGTGGTTGGAAGTCGATCTGCCTTAGCTCTTTCCCTAAAGTGTC a score=20563.0 s hg17.chr17_random 671236 88 + 2618010 ---CAAGCATCCTAAAGTATCAGTCAAATAAGCAGTCTCTTCTCATTCC----TGGCAGAGAGTAAGTCA---AAGCCTTAATTCAATTTG---CATACCT s panTro1.chr19 20312289 88 - 82489036 ---CAAGCATCCTAAAGTATCAGTCAAATAAGCAGTCTCTTCTCATTCC----TGGCAGAGAGTAAGTCA---AAGCCTTAATTCAATTTG---CATACCT s rn3.chr10 24737150 90 - 110733352 ---TAAGCTTCCTTAAGCAGTACTAAAGTTAGCAGTTTCTTTTCACTTCTGGGTGGTAGAGGATAAATAATTGGAGTTCTAAT---ATCTG-----TACAG s canFam1.chr9 16584956 89 + 53642819 AACTGAGCATTCTGAAGTA----TCAAATAAGCAATGTCTTCTCACTCT----TGCTAGAGAGCAAATCA---AAGCCATAATTT-ATTTAATCCATACAT a score=2590.0 s hg17.chr17_random 671324 23 + 2618010 GTTTTCATGTAACAACAAATAAt s panTro1.chr19 20312377 23 - 82489036 GTTTTCATGTAACAACAAATAAt s rn3.chr10 24737240 23 - 110733352 GTTCTTATTTATTTTTGCAAAAT a score=28136.0 s hg17.chr17_random 671347 295 + 2618010 tttttttttttttgagacagagtttctctgttgttgtttaggctggagtgcaatgatgcgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgccttagcctcccaagtagctgagattataggcatgcaccaccacagccggctagttttgtatttttagtagagacggggtttctccgtgttggtcaggctggtcttgaactcctgaccccaggtgacccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcc s panTro1.chr19 20312400 295 - 82489036 tttttttttttttgagacagagtttctctgttgttgtttaggctggagtgcaatgatgcgatcttggctcactgcaacctccgcctcccgggttcaagcgattctcctgccttagcctcccaagtagctgagattataggcatgcaccaccacagccggctagttttgtatttttagtagagacggggtttctccgtgttggtcaggctggtcttgaactcctgaccccaggtgacccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcc a score=2073.0 s hg17.chr17_random 671642 12 + 2618010 ---ACAACAAAGAAT s panTro1.chr19 20312695 12 - 82489036 ---ACAACAAAGAAT s rn3.chr10 24737263 15 - 110733352 ATAAGAGCACAGAAT a score=26353.0 s hg17.chr17_random 671654 165 + 2618010 TTTACCAGAAGTGGGTATGATTTATATCTTAGTTTGAATTGCTACTTACCTTT-----GGGGAACAG-----ACCTTTCCTTGATGTATCTTTAACACTGAAATCTTGGCAAGTTGCCAAGTCTC-AAATGTTCATG------------AGTA-AGACTGC----AATATCACAATATCATAGTCACACAGGA---------------------- s panTro1.chr19 20312707 164 - 82489036 TTTACCC-AAGTGGGTATGATTTATATCTTAGTTTGAATTGCTACTTACCTTT-----GGGGAACAG-----ACCTTTCCTTGATGTATCTTTAACACTGAAATCTTGGCAAGTTGCCAAGTCTC-AAATGTTCATG------------AGTA-AGACTGC----AATATCACAATACCATAGTCACACAGGA---------------------- s rn3.chr10 24737278 173 - 110733352 CC------AGAAAAGTGTGATTTCTTTCTTAGTTTACAT---TATCTACTTTG-----GGGAGAGAGGTGCAAGACTTCCATGA--TATTTCTAACAATGAACTCTTGACAATGTAGTAATCTTCTGAAGATTTGTGCTGCACAGATGCAGCATAGAAAGT----AATATCGTTATGTAAGAATTAGAATGAA---------------------- s canFam1.chr9 16585248 194 + 53642819 TTTATTGGAATTAAATATGACCCATATTTTAGTTGGAATTGTTACCTGTCTTTGGCTGGGGGGGCAG-----AACTTTCATTGATATGTCTTTAACACTGAAGTCTTGGCAGTTTTCT--CTTTC-AAATATTCACG------------AGTA-AAACTGCTACAAAGAAAGTAACATCTTAGTTGCACAAAGGTGGGAATGAAGCATGTTGGGA a score=24062.0 s hg17.chr17_random 671819 154 + 2618010 ATCTGATAGAAAAGC--ATCACATTTATAA-AGCCTTCTTTCCTGTACATCACTGACGTTTTGTG--------AATTTTAAAGAATT-----------TGTAATTATTTTTAAGGAGCATATTTAATGTAGTTAATGTAACCTAGAATAGGCTCATTTGAAATGAAACTCTTGCTA s panTro1.chr19 20312871 154 - 82489036 ATCTGATAGAAAAGC--ATCACATTTATAA-AGCTTTCTTTCCTGTACATTACTGACGTTTTGTG--------AATTTTAAAGAATT-----------TGTAATTATTTTTAAGGAGCATATTTAATGTAGTTAATGTAACCTAGAATAGGCTCATTTGAAATGAAACTCTTGCTA s canFam1.chr9 16585442 174 + 53642819 ATCTGGCAGAAAACCTTTTCATATTTATAGTAGCCCTGTTTCCCTTGTATCATAAAAATTTTCTGGGGAAAAAAAGTTTTATGAATTAATACAGGTTGTATAATTGTGTTTCAGGAGCATATTTAACCTAG--GATGTGGAATAAAATAGGTTAGTTTGAAATGACACTTTTGTTA a score=11293.0 s hg17.chr17_random 671973 31 + 2618010 ATAGGAACTTAATTCACCAAATTAAGAATAT s panTro1.chr19 20313025 31 - 82489036 ATAGGAACTTAATTCACCAAATTAAGAATAT s rn3.chr10 24738161 31 - 110733352 ATTGAAACTTGATTTATTAAATGGAGAATGT s canFam1.chr9 16585616 31 + 53642819 ATAGGAACataatttttaaaattaagaatat a score=3458.0 s hg17.chr17_random 672004 10 + 2618010 TTAGTTTTTG s panTro1.chr19 20313056 10 - 82489036 TTAGTTTTTG s mm5.chr11 24719284 10 - 121648857 TTTATTTCAG s rn3.chr10 24738212 10 - 110733352 TCAGCCTGGG s canFam1.chr9 16585647 10 + 53642819 ttaattttag a score=14763.0 s hg17.chr17_random 672014 63 + 2618010 TAG-------------------------------------------AGATTTTGCT----CTTGAAAATGT-------TGCAGTCTTGATTTCGTCTTGTCAGTCCAGTCAGAATTG s panTro1.chr19 20313066 63 - 82489036 TAG-------------------------------------------AGATTTTGCT----CTTGAAAATGT-------TGCAGTCTTGATTTCGTCTTGTCAGTCCAGTCAGAATTG s mm5.chr11 24719294 67 - 121648857 GAG-------------------------------------------ACATTTTGTTAAAGTTCCTAACTGT-------GGCAGTTGAGATTTGTTCTTTTCAATGTGCTCAGATTTG s rn3.chr10 24738222 108 - 110733352 CAGTAGAGCCAGGTCTGTCTCACAAACGAGAACAGTCATTCATTTTAGACGTTGTTAGAGCTCTTAACTGC-------AGCACTGGGGATTTGTTCCTTTCAG--CACTCAGATTTG s canFam1.chr9 16585972 67 + 53642819 TAG-------------------------------------------AGATTTGGGT----CTTAAAAATGTTAATTGCTGCAGTCTGGATTTTGTCTT---AGTCCAGTCAGATTTG a score=5678.0 s hg17.chr17_random 672077 6 + 2618010 TGAAGT s panTro1.chr19 20313129 6 - 82489036 TGAAGT s mm5.chr11 24719361 6 - 121648857 TGAAAT s rn3.chr10 24738330 6 - 110733352 TGAAAT s canFam1.chr9 16586039 6 + 53642819 TGAAGT s fr1.chrUn 199211506 6 - 349519338 TAATGT a score=3653.0 s hg17.chr17_random 672083 4 + 2618010 ATTT s panTro1.chr19 20313135 4 - 82489036 AATT s mm5.chr11 24719367 4 - 121648857 AATT s rn3.chr10 24738336 4 - 110733352 AATT s canFam1.chr9 16586045 4 + 53642819 AATG s fr1.chrUn 199211512 4 - 349519338 AATC s danRer1.chr11 6185945 4 + 27258617 ATTT a score=161578.0 s hg17.chr17_random 672087 106 + 2618010 TTTTTTT---CTCATTCCAGAAATACATGCTACAGGATTTAACTATCAGAATGAAGATGAAAAAGTCACCTTGTCTTTCCCTAGTACTCTGCAAACAGGTAAG-AGACAT s panTro1.chr19 20313139 105 - 82489036 TTTTTT----CTCATTCCAGAAATACATGCTACAGGATTTAACTATCAGAATGAAGATGAAAAAGTCACCTTGTCTTTCCCTAGTACTCTGCAAACAGGTAAG-AGACAT s mm5.chr11 24719371 101 - 121648857 TCTTCT--------TTCCAGAAATCCATGCGACAGGATTTAACTATCAGAATGAAGATGAGAAAGTCACCTTGTCTTTTCCTAGCACTCTGCAAACAGGTAAG-AAACAT s rn3.chr10 24738340 108 - 110733352 TTTCTCT-TCTTCTTTCCAGAAATCCATGCGACAGGATTTAACTATCAGAATGAAGATGAGAAAGTCACCTTGTCTTTTCCTAGTACTCTCCAAACAGGTAAG-AAGCGT s canFam1.chr9 16586049 107 + 53642819 TTTTTTAATTTCCATTCCAGAAATACATGCTACAGGATTTAACTACCAGAATGAAGATGAAAAAGTCACTTTGTCTTTTCCTAGTACTCTCCAAACAGGTAAG---TCAT s galGal2.chrUn 27907811 105 - 165033910 TCTGTT----TCTCTTTCAGAGGTACATGCCACAGGGTTCAACTATCAAAATGAGGATGAGAAGGTTACCCTCTCCTTTCCCAGTACCCTTCAGAAAGGTAAG-AGGTAT s fr1.chrUn 199211516 101 - 349519338 --------TATTTTCCCCAGAAATAAATGCTACAGGTTTCAACTATCAGAATGAGGATGAGAAAGTCACCCTGTCGTTTCCAAGCACCCTGCAGAAAGGTCAG-GCAGCT s danRer1.chr11 6185949 107 + 27258617 TCTCTCC---GTCCATTTAGAAATTAACGCTACGGGATTTAACTATCAGAACGAGGATGAGAAGGTGACCCTATGTTTTCCCAGCACTCTGCAAAAAGGTACTTAAGTGT a score=1056.0 s hg17.chr17_random 672193 42 + 2618010 AGCTTTTGTAAAATCTCGTGATGAATATAGTGACATCTGACT s panTro1.chr19 20313244 41 - 82489036 AGTTTTGGTAAA-TCTCGTGATGAATATAGTGACATCTGACT s mm5.chr11 24719472 39 - 121648857 GCCTTTTGTGAGATCCTATGAGGGAGAAAG---CAGCTTACT s rn3.chr10 24738448 39 - 110733352 ATCTTTTGTGAAATCCTATGAGAGAGAATG---CATTTTACT s canFam1.chr9 16586156 40 + 53642819 GGCTTTTGTAAAATTCCATGATGAATAGTG--ACATCTTATT s fr1.chrUn 199211618 42 - 349519338 TGCTCTCCGACGTCCTTGCTTTTCATACAGTCGTCTCTCACT s danRer1.chr11 6186056 40 + 27258617 -AACCTGCGAGACTCATGTCAACAATCTCAGTGTAATTAGT- a score=3595.0 s hg17.chr17_random 672235 21 + 2618010 TCCTCCAGAG-AAATTTATTGT s panTro1.chr19 20313285 21 - 82489036 TCCTCCAGAG-AAATTTATTGT s mm5.chr11 24719511 14 - 121648857 G-TTCCAAAG-AAAT------T s rn3.chr10 24738487 14 - 110733352 G-TTCCAAAG-GAAT------C s canFam1.chr9 16586196 21 + 53642819 TCTTCCAGAG-AAATTTGTCAT s danRer1.chr11 6186096 20 + 27258617 --TGCTATAGTCAGTTTATTGT a score=16488.0 s hg17.chr17_random 672256 37 + 2618010 ATGCCATTTTTTCCCTCGTTGTTATTAGCAGATTAAG s panTro1.chr19 20313306 37 - 82489036 ATGCCATTTTTTCCCTCGTTGTTATTAGCAGATTAAG s mm5.chr11 24719525 37 - 121648857 ATCCCATTTTTTCCACTATTATTGCATGCAGATTAAA s rn3.chr10 24738501 37 - 110733352 AGCTCATTTCTTCCACTGTTATTGCTTACAGATTAAA s canFam1.chr9 16586217 36 + 53642819 ATGCCAGTTTCTTTTTC-TCGTTTTAAGCAGATTAAG a score=909.0 s hg17.chr17_random 672293 8 + 2618010 TATTAAGA s panTro1.chr19 20313343 6 - 82489036 TATTAA-- s canFam1.chr9 16586253 8 + 53642819 TATTAAGA a score=26551.0 s hg17.chr17_random 672301 304 + 2618010 GCttttttttttttttactttgagacggagtcttactctattgcccaggctggagagtagtggcatgatcttggctcactacaacctccaccttccaggttcgagtgattctcctgcctcggcctcccgagtagctgggattacaggtgcctaccaccacaccggctaatttttttgtatttttagtagagacaaggtttcgccatgttggccaggctggtcttgaactcctgatctcaagcgatctgcccgccctggcctcccaaagtggtaggattacaggcaggagccaccgcgcccagct s panTro1.chr19 20313349 289 - 82489036 ---------------TCCtttgaggcggagtcttactctattgcccaggctggagagtagtggcgtgatcttggctcactacaacctccaccttccaggttcgagcgattctcctgcctcggcctcccgagtagctgggattacaggtgcctaccaccacaccggctaatttttttgtatttttagtagagacaaggtttcgccatgttggccaggctggtcttgaactcctgatctcaagtgatctgcccgccctggcctcccaaagtggtaggattacaggcaggagccaccgcgcccagct a score=2634.0 s hg17.chr17_random 672605 5 + 2618010 GTATT s panTro1.chr19 20313638 5 - 82489036 GTATT s mm5.chr11 24719562 5 - 121648857 ACGTT s rn3.chr10 24738538 5 - 110733352 ATGTT s danRer1.chr11 6186166 5 + 27258617 ATGTT a score=6391.0 s hg17.chr17_random 672610 14 + 2618010 AAGAGCTTTTT-AAA s panTro1.chr19 20313643 14 - 82489036 AAGAGCTTTTT-AAA s mm5.chr11 24719567 11 - 121648857 AAGAGCTTTTC---- s rn3.chr10 24738543 11 - 110733352 AAGAGCTTTTC---- s canFam1.chr9 16586261 15 + 53642819 CAAAGCTTTTTGAAA s danRer1.chr11 6186171 14 + 27258617 ATGTGCCTTTT-AAA a score=36094.0 s hg17.chr17_random 672624 198 + 2618010 GAGGTTTGTTGCAACTTTTGGGCCACCAGCATTTCCTTCTGCGGAAGTTGGGCTACGAAAAGCAGGGTTTCCACCTCCTGTCAC-TCTATATTCTCTTTAAACAAACAAGCCAAGAAAAACAGGACAAAAACTAAAGATCATTCTATCCTAGAATGTAATGTATTGTTTTCCAGTTTTAC--------CTTTTTAAAAATACCTTTA s panTro1.chr19 20313657 198 - 82489036 GAGGTTTGTTGCAACTTTTGGGCCACCAGCATTTCCTTCTGTGGAAGTTGGGCTACGAAAAGCAGGGTTTCCACCTCCTGTCAC-TCTATATTCTTTTTAAACAAACAAGCCAAGAAAAACAGGACAAAAACTAAAGATCATTCTATCCTAGAATGTAATGTATTGTTTTCCAGTTTTAC--------CTTTTTAAAAATACCTTTA s mm5.chr11 24719578 153 - 121648857 -------------------------------TTTCCCCTTAAAAATTCTGAATTATGAAAATAAACATTTCAAATTTCTTTGTC-TTTGTGTTTTACTTAAAC----------AGAAAACTATG--AAAAACTACAGATTATT-TGCTATAGAATAAGATGTATAGCTTTCAGGTTCTG---------TTTGTTAACAATCCATGTA s rn3.chr10 24738554 154 - 110733352 -------------------------------TTCCCCCTTAAACATTCTGAATTTTGAGAATAAAAGTTTCAAATTTTTTTGTCTTTTGTGTTTTACTTAAAC----------AGAAAACTATG--AAAAACTAAAGATTGTT-TGCTATATAATAAGATGTATAGCCTTCAGTTTCTG---------TTTGTTAAAAATACATTTC s canFam1.chr9 16586276 123 + 53642819 GAGGTTCATTGCAGCTTTTGGGGCACCAG------------------------------------------------------------------------------------GAAAAAAGAAGACCAAAACTAATAATCATTCTACCCTGGAACATAATACATTGTTTTTTACTTTTTCAGTCTCAGCTTTTTAAAAATACAGTGA a score=1505.0 s hg17.chr17_random 672822 5 + 2618010 CCTAg s panTro1.chr19 20313855 5 - 82489036 CCTAg s rn3.chr10 24738708 2 - 110733352 ---AG s canFam1.chr9 16586399 5 + 53642819 CCCAG a score=27925.0 s hg17.chr17_random 672827 297 + 2618010 gccaggcgtggtggctcacacctgcaatcctagcgctttgggaggccaaggcgggctgatcacttgaagccaggagttagggaccagcctggccaacatggcaaaaccccatctctaccaaaaaatacaaaaattacccagtgtggtggctcatccctataatcccagctactcagaaggctgaggcaagaaaatcgccagaagtcaggaagtggaggttgcagtgaaccgagatcatgccactgcactccagcctgggtgatagagtgggactctgtctaaaacaaacgaacaaaa s panTro1.chr19 20313860 297 - 82489036 gccgggcatggtggctcacacctgcaatcctagcgctttgggaggccaaggcgggctgatcacttgaagccaggagttagggaccagcctggccaacatggcaaaaccccatctctaccaaaaaatacaaaaattacccagtgtggtggctcatccctataatcccagctactcagaaggctgaggcaagaaaatcgccagaagccaggaagtggaggttgcagtgaaccgagatcgtgccactgcactccagcctgggtgatagagtgggactctgtctaaaacaaacgaacaaaa a score=546.0 s hg17.chr17_random 673124 2 + 2618010 TA s panTro1.chr19 20314157 2 - 82489036 TA s canFam1.chr9 16586404 2 + 53642819 TA a score=0.0 s hg17.chr17_random 673126 10 + 2618010 CTTTTACCTA a score=533.0 s hg17.chr17_random 673126 7 + 2618010 CTTTTAC s panTro1.chr19 20314159 7 - 82489036 CCTTTAC a score=573.0 s hg17.chr17_random 673133 2 + 2618010 CT s panTro1.chr19 20314166 2 - 82489036 CT s rn3.chr10 24738713 2 - 110733352 CT a score=273.0 s hg17.chr17_random 673135 1 + 2618010 A s panTro1.chr19 20314168 1 - 82489036 A s mm5.chr11 24719731 1 - 121648857 A a score=51144.0 s hg17.chr17_random 673136 142 + 2618010 GCTCCATCTTCTATTAATTC--AATCCAAATCCCTGAAGTGAATG-GTCACAGATGATTTTGATATACAACCAGAGATCAAATAGGTATTGTGTTATTGAGGGCACAGAAAGAAAGATACGTTGAT---ATGTTACTATTGTTAGGTA s panTro1.chr19 20314169 142 - 82489036 GCTCCATCTTCTATTAATTG--AATCCAAATCCCTGAAGTGAATG-GTCACAGATGATTTTGATATACAACCAGAGATCAAATAGGTATTGTGTTATTGAGGGCACAGAAAGAAAGATACGTTGAT---ATGTTACTATTGTTAGGTA s mm5.chr11 24719732 144 - 121648857 GCCGCTCCCTCCGCCGGGTGCTGACCGAGCTCTCTGAGGACAGGG-TTTCCCTAGCATTCCGGTGTATGACCAGAA---CAAGAGAAGTTTTACTAGTGACAGCATCGAAAGGAAGATTTATTGCTATGATGTTACTATTATTTGACA s rn3.chr10 24738715 139 - 110733352 ------CCCTCCATCTGATGCTGATTGAAATCTCTGAGGAGAATGTTTCACATAGCATTTTAGTGTACAACCAGAA---CAAGAGAAATTTTACTAGTGAGAGCACAGAAAGGAAGATTTGTTAGTATGATGTTACTATTACTTGACA s canFam1.chr9 16586406 129 + 53642819 ACTCCATCTTCCAGTTATTG--AGTCCACATCTCTGAGATGAATGTCCCACAGATGATTTTGATGTATAA---------AAAT-----TTATGCTAGTGAGGACATGGAAGGAAAGATTTGTTGAT---ATGATACTATTATTAGGTA a score=45692.0 s hg17.chr17_random 673278 112 + 2618010 TAAAAGCACAAAGA----AATAGACTTTCTGAGCTTAGTATATGTGGAAGAAATTATATACCAATCAATTGGTGAAGTACTAAGACTTTGATGaatgaacaaatga--aaaggaacag s panTro1.chr19 20314311 112 - 82489036 TAAAAGCACAAAGA----AATAGACTTTCTGAGTTTAGTATATGTGGAAGAAATTATATACCAATCAGTTGGTGAAGTACTAAGACTTTGATGaatgaacaaatga--aaaggaacag s mm5.chr11 24719876 107 - 121648857 TAAAAGCACAAAGAATATAGAAGACCTTTTGAGCTTAATATA----GAAGAAATTATCC-----TCAATCAGGAAAGCTCTAGGAATTTGGTAA--GAGTGGATGATGAAAGAAACGG s rn3.chr10 24738854 88 - 110733352 TAAAAGTACAAAGA-----------------------ATATA----GAAGAAATTATCCCCAAATCAATTAGGAAAGCTCTAGAAATTTGATAAATAAGTAGATG---AAGGAAAAGG s canFam1.chr9 16586700 112 + 53642819 TAAAAACACAAAGA---AAAAAGACTTTCTGAGCTTAATGTA-GTGTAAGAAATTATATACAAATCAATTAGTAAAGCACTAAGACTTTTATTAGTGATCAATTGA--AAAGCAACAG a score=17227.0 s hg17.chr17_random 673390 75 + 2618010 ataattcaaaaggaagaaaatgtaaatgactaataaacatgtgaaaagatattgagcctcctagtaatgagaaa------------------------------------------------t s panTro1.chr19 20314423 75 - 82489036 ataattcaaaaggaagaaaatgtaaatgactaataaacatgtgaaaagatattgagcctcctagtaatgagaaa------------------------------------------------t s mm5.chr11 24719983 104 - 121648857 AGAGACCGCACAGA--AACATGTAAATAACTATTATATGTGTG-AAAGAGATTTAGCTTCCTAGTAATCAGAAATATAAAAA----------------TAAGTTACTATCGTTCTAAACAGGT s rn3.chr10 24738942 94 - 110733352 AGAGATCATACAGAA-AAAGTATAAATAACTT------------AAATGTATTTAGTTTCCTAGTAATCAGAGATATCAAAATAAGTTACTATAATACTAAACCAG----------------T s canFam1.chr9 16586943 73 + 53642819 ATAATTTGTATGAAAGAAAACGCAAATGA--AGGAAACATGTGAAAAGATACTTGGCTTCCTAGTAATGAGAAAT------------------------------------------------ a score=16085.0 s hg17.chr17_random 673465 27 + 2618010 ttttgcttctcatgtgagctgaaattt s panTro1.chr19 20314498 27 - 82489036 ttttgcttctcatgtgagctgaaattt s mm5.chr11 24720087 27 - 121648857 TTTTTCTTGTCAAGTAAACTAAAGTTT s rn3.chr10 24739036 27 - 110733352 TTTTTCTTGTCATGTAAACTGAAGTTT s canFam1.chr9 16587257 27 + 53642819 TTTTGCCTGTTCTGTAAGCTAAAGTTA a score=6901.0 s hg17.chr17_random 673492 13 + 2618010 --taaaaattcccaa s panTro1.chr19 20314525 13 - 82489036 --taaaaattcccaa s mm5.chr11 24720114 13 - 121648857 --AAAAAATTCTCAA s rn3.chr10 24739315 13 - 110733352 --AAAAGATTCTTGA s canFam1.chr9 16587284 15 + 53642819 AAAAATGATTCTTAA a score=119694.0 s hg17.chr17_random 673505 341 + 2618010 tgatatggc----------------------------------tgccttgatatcgctggggggagtataaatccatgtaatttttttgtaaagcattctgg-----------cagta--tatc-aagagcctaaatatgttcatgtcctttgacccagcaatt-ctgcta-----ataggaatatatcccaaggaaaagtcataaatacagaaaatactttatgcccagaagtgt-----ctgagatattacttacggtagtaaa-aaattataattaatatatttgttcaacactaaggaaatgatcaagccaggaatgatatatctatatagtgaa---atatacttagcaattaaaagtgaggtttgcgaattc---ttaaccctgtaaagtgcttattataa s panTro1.chr19 20314538 341 - 82489036 tgatatggc----------------------------------tgccttgatatcgctggggggagtataaatccatgtaatttttttgaaaagcattctgg-----------cagta--tatc-aagagcctaaatatgttcatgtcctttgacccagcaatt-ctgcta-----ataggaatatatcccaaggaaaagtcataaatacagaaaatactttatgcccagaagtgt-----ctgagatattacttatggtagtaaa-aaattataattaatatatttgttcaacactaaggaaatgatcaagccaggaatgatatatctatatagtgaa---atatacttagcaattaaaagtgaggtttgtgaattc---ttaaccctgtaaagtgcttattataa s mm5.chr11 24720255 350 - 121648857 TGAAATAACACTTAAATGAAAAAGATTCTTGAAAATAAACAAATGTCTCTGCAATACTAGTTAGAG-ATAAACCCATGTAAATACTTTGAAAACCAGCTTGT-----------TAAAA--AAAAGAAGAAGAAAAATA-------GCTCTT---ACCACCAGTT-CTGTT------ATAGGAATATATTCTAAGGAAAAGTCATAA----CAAAAGTATTTTATAGCTAAAAGAATATTTATTGAGACATTTCACGTGTTGGTGAATGAATTAGAACTAATATATTTGTTCAACAC--AGAGATTGATT---------TTGACACATTCGTATAGTGAG---GTGTATTTAACAGT--------AAGTTCATGATTTCTTTTTAACATAATAAAGTACTAATTATAA s rn3.chr10 24739328 328 - 110733352 TAATA-AAC-------------------------------AAATGTCTCTGTAT-ACTACTTAGAG-ATAAATCCATGTAAATACTTTGAAAACCAGCTTGTCCAACAAAAAACAGAA--AAGA-AAAGGAAGAAAAA----------------ACCAGCTGTCACTGTTATGAATATATGAAGATACTCTAAGAAAAAGTCATAA----CAAAAGTATTTTATACCTAAAAGAGTATTTATCAAGACATTTCATGTGTTGGTGAAAGAATTAGAATTAATATATTTGTCCAACAC--TGAGATTCATT---------TTGACACATTAGTATAGCAAA---GTGTATTTAACAAT--------AAGTTTATAAATTCTTTTTAACATAATAAAGTACTAATTATAA s canFam1.chr9 16587299 347 + 53642819 TGATGTGAC----------------------------------TACCTTGatattattggtgggaatgtaaatctatgcaatgtatttggaaggcaatctgg-----------caatatgtatc-aaaagcctaaacatgtccatgtcttttgacccagtaatt-ctggag-----ataggaatatgtcctaaggaaaaatcataaatgcaggaaatactttatgcctggaaatgt--ctattgagacattacttaaggtagtaaa-aaattagagtgaatgtatttgtccaacactaagggagtaattaagctaa--ttatgatatcagtatggtggaaatatatatatagtaattaaaagtgagctttatgagttc---ttaacactgtgaagtatttattataa a score=573.0 s hg17.chr17_random 673846 2 + 2618010 tg s panTro1.chr19 20314879 2 - 82489036 tg s canFam1.chr9 16587646 2 + 53642819 tg a score=191.0 s hg17.chr17_random 673846 2 + 2618010 tg s canFam1.chr9 16587646 2 + 53642819 tg a score=19125.0 s hg17.chr17_random 673848 68 + 2618010 taaaattgaaaagaagaatataaaattacatatTTAAGGTGGTGAATCATGTCTCT-AAATGGCACAAA s panTro1.chr19 20314881 68 - 82489036 taaaattgaaaagaagaatataaaattacatatTTAAGGTGGTGAATCATGTCTCT-AAATGGCACAAA s rn3.chr10 24739656 66 - 110733352 CACACTT---AAAAAGTATATGCGTGCACATATTCAAGTTGATGGATCATATGTTTAAAATAGTACAGG s canFam1.chr9 16587648 69 + 53642819 taaacttgaaaagcagaatacaaaattatatatacagggtgatGAATCATACCTCTAAAATGATATGAA a score=35888.0 s hg17.chr17_random 673916 207 + 2618010 TAAAATGATAATTATGTCTGGGTGTTGACATAATTGGTGATTTTTATTCTTATTTATATCTTTTGTCTGATTTTCACAATTTTCCTACTGAGAATCTATTGaattaatataaaattatttttag-aaaaaatttaaattGGAGATGTTTAGTCTTTTATTTCAGTGC--TCTTGG-------------AGGCCCTTTATGTGTAATTATTATAAAAATAAATG s panTro1.chr19 20314949 211 - 82489036 TAAAATGATAATTATGTCTGGGTGTTGACATAATTGGTGATTTTTATTCTTATTTACATCTTTTGTCTGATTTTCACAATTTTCCTACTGAGAATCtatttaattaatataaaactatttttag-aaaaaatttaaattGGAGACATTTAGTCTTTTATTTCAGTGC--TCTTGGTT---------GGAGGCCCTTTATGTGTAATTATTATAAAAATAAATG s canFam1.chr9 16587717 209 + 53642819 -----TAATA--TATGTCTGGTTGTTGACATAATTGATTATTTTTG---TTATTTATATCTTTT-TTTAGTTTTCATAATTTTTATACTGATAATATATTGCCTTAATATAGTAGTATTTTTAGAAAAAAATTTTGATTGGAG---TTTAATCTTTTATTTCAGTGCCTTTTTGCCTTTTTCTGACTAGGATTTCTTATATGAAATTATTATAAAAATAAATG a score=29605.0 s hg17.chr17_random 674123 311 + 2618010 ggccgggcgtagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctgactaacacggtgaaaccctgtctctactaaaaatacaaaaaattagctgggaatggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcaccactgcactccagcctgggtggcagagtgagactccgtcccaaaaaacaaaacaaaacaaaacaaaaAATG s panTro1.chr19 20315160 311 - 82489036 ggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctgactaacacggtgaaaccctgtctctactaaaaatacaaaaaattagctgggaatggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcaccactgcactccagcctgggcggcagagtgagactccgtcccaaaaaacaaaacaaaacaaaacaaaaAATG a score=44630.0 s hg17.chr17_random 674434 260 + 2618010 CTTTGCCATGAACATGTATTAAAAGCTATTGAAGAATATAATTTGAAAAGGAAGGAGATTCTTTCGCTGATTTCTTCTACTTCCATTGTCTGGTGAATCTGTCTAGAAATATTCCTATGtatat-ataaatttatgtatataatttaaCCCACAGATAGGATCACAAATCTCAGTGGCTTATAACCACTGAGATTTCTTTCTTTTTTACACATGGGCCATGAGGACTGCTGATCATATGCAGCCATATC-------ACCAACTCTGCT s panTro1.chr19 20315471 260 - 82489036 CTTTGCCATGAACATGTATTAAAAGCTATTGAAGAATATAATTTGAAAAGGAAGGAGATTCTTTCGCTGATTTCTTCTACTTCCATTGTCTGGTGAATCTGTCTAGAAATATTCCTATGtatat-ataaatttatgtatataatttaaCCCACAAATAGGATCACAAATCTCAGTGGCTTATAACCACTGAGATTTCTTTCTTTTTTACACATGGGCCATGAGGACTGCTGATCATATGCAGCCATATC-------ACCAACTCTACT s canFam1.chr9 16587926 244 + 53642819 TTTTGCTATGAGTATGTATTAAAAGATACCAAAGAATAGATCATAAAAATTAAGA------TTTCTCT-ACTCCTGCCACTTCCATTGTCTTGTGAATCCTTCCAGAAATATT-CTATGTATATAATAAATATATGTGTGCATTTTAATCCACAAATGGGATCACATATCTCAGTGGCTTACAACAAATA-------TTTCTTGCTTACACCT-GGCACTGAGGACTGC--------TGCAGGCATACCTTTGCCTAAGAACTCTGCT a score=25729.0 s hg17.chr17_random 674694 140 + 2618010 GGCTCCACTTGGCTCCCAAC---TGTCTTTCCAGGACTAGTAGTCAGCGAGCAGCCACTCTCTGTATCAT-----------GCATGGCAGAGGGCAGAGGCTCAGGGATGGGGAGAAAGCTAGACCACAAAGACACATTTAAAACTTCTGCATg s panTro1.chr19 20315731 140 - 82489036 GGCTCCACTTGGCTCCCAAC---TGTCTTTCCAGGACTAGTAGTCAGCGAGCAGCCACTCTCTGTATCAT-----------GCATGGCAGAGGGCAGAGGCTCAGGGATGGGGAGAAAGCTAGACCACAAAGACACATTTAAAACTTCTGCATg s canFam1.chr9 16588368 149 + 53642819 AACTCTgctcagctcacaactcttctcattccaggacctgtagt----gagcagctactatctacagcatactgttctctcacatagcagaggacagaagctcagggatgggttcagagaca-accacaaagatacatttaaggcttctgcatg a score=14131.0 s hg17.chr17_random 674834 150 + 2618010 gccaggcgtggtgactcacacctgtaatcccagcatttttggaggctgaggcaggaggattgcttgagcccaggagttcgagaccagcctaggcaatgtagtgagaccctgtctctataaaaaataaaataaaaaataaaaTttctgtgt s panTro1.chr19 20315871 150 - 82489036 gccaggcgtggtgactcacacctgtaatcccagcatttttggaggctgaggcaggaggattgcttgagcccaggagttcgagaccagcctaggcaatgtagtgagaccctgtctctataaaaaataaaataaaaaataaaaTTTCTGTAT a score=50214.0 s hg17.chr17_random 674984 280 + 2618010 gatggtggtatacttgatgtctactcacatttcattgaccaaagcaagtagcatgaccaagcccaaagtcactggggTAGCATTTAAcagacatttgcgaa---------aagtttcta--atgaaagatagggcaaaaagcaaaattataagtataatagaaataaaggaagttggaaaaagcaaagacaaatctaaagaaagttaaaaaaaaaacaaacc--catagctaattactatccttagaga----gttaagagaaagcattgcgtgcattaaacaaggacaggacagaa s panTro1.chr19 20316021 280 - 82489036 GATGGTGGTGTACTTGATGtctactcacatttcattgaccaaagcaagtagcatgaccaagcccaaagtcactggggtagCATTTAAcagacatttgcaaa---------aagtttcta--atgaaagatagggcaaaaagcaaaattataagtataatagaaataaaggaagttggaaaaagcaaagacaaatctaaagaaagttaaaaaaaaaaaaaacc--caaagctaattactatccttagaga----gttaagagaaagcattgcgtgcattaaacaaggacaggacagaa s canFam1.chr9 16588517 283 + 53642819 gatggtggtatacttgatatccattcacatttcactggccaaagcaaattgtatggccaaa-ccAAAGTCACTAGGGTAACAATTAccagatattaccagatatttgattaaacttctactgtgaaagatagagtaaaaagccaaac------agtaataaagatataggaacttgttagaagtaaagacaaatggaaagaaagtgtcaaaaaataaaaacccacaaaacaaattaatatccttaaagatattgtcaa-------tatcacattcattaaacaagaacaggaCAGCg a score=46551.0 s hg17.chr17_random 675264 508 + 2618010 tgccatcagataggaagaattacagcaggaaaa-cttggaaattatgataggtataaaaaacccagtaaaagtgttaaagatgaagttgaggaaacttccaagcagtagaaaaaacagatagaaaacagaaaaatagatttgagaaccagtccagcagaaccaacatccatctagtaaaacagaaagcagaggaaatgggaagaggattttttaattttcatttttgcaacagaatcttgctctgtcacccaggctggagtgcagtggtgcaatctcggctcaccacagcctccacctcgtgggttccagtgattctcctgcctcagcctcctgggtagctgagattacaggcacacaccaccacgcccagctgatttttgtatttttagtagagttggggtttcaccatgttggccaggctggtctcgaactccggaccttaggtgatgtgcccacttcggcctctcaaagtgctagggattacaggcgtgtgccactgtgcccggcc s panTro1.chr19 20316301 508 - 82489036 tgccatcagataggaagaattacagcaggaaaaacttggaaattatgataggtataaaaaacccagtaaaagtgttaaagatgaagttgaggaaacttctaagcagtagaaaaaacagatagaaaacagaaaaatagatttgagaaccagtccagcagaaccaacatccatctagtaaaacagaaagcagagaaaatgggaagaggattttttaattttcatttttgcaacagaatcttgctctgtcacccaggctggagtgcagtggtgcaatctcggctcaccacagcctccacctcgtgggttccagtgattctcctgcctcagcctcctgggtagctgagattacaggcacacaccacctcgcccagctgatttttgtatttttagtagagttggggtttcaccatgttggccaggctggtctcgaactctggaccttaggtgatctgcccacttcggcctctcaaagtgctagg-attacaggcgtgtgccactgtgcccggcc a score=2793.0 s hg17.chr17_random 675772 24 + 2618010 agaagagaaactcaaaaagacagg------- s panTro1.chr19 20316809 24 - 82489036 agaagagaaactcaaaaagacagg------- s mm5.chr11 24720869 31 - 121648857 TTAAAAAAAAATTAAAAAGAGAAGAAATTTA a score=44349.0 s hg17.chr17_random 675796 190 + 2618010 aacatttccttgaactgatagagcaggagccttcagtttgcaaaggtacaccattgagagagactagcttaaaaaatgt-----aaaaattgccacactgactgaaattttagaacttctgcgataaagtaaaactcccagaaagttcctgtctgggatagggggcaataggagggaaggcaggtagcatactac s panTro1.chr19 20316833 190 - 82489036 aacatttccttgaactgatagagcaggagccttcagtttgcaaaggtacaccattgagagagactagcttaaaaaatgt-----aaaaattgccacactgactgaaattttagaacttttgcgataaagtaaaactcccagaaagttcctgtctgggatagggggcaataggagggaaggcaggtagcatactac s mm5.chr11 24720900 172 - 121648857 AAAATCTCTTTGAATTA--AACACAGGAGCTTTTAGTTTACAAAATATTTCTTTGGCGAGAGGGAGATTGAGAAAATAT-----AACAAATTGCATCCCAAAGCAGATTTTAGTGCCTTGGGAATAAAGTGAAGCTTTGAGAGAATTTCT-TTTGGGGT--------------GGGATGGAAGCTGGTATG-TAC s rn3.chr10 24739892 177 - 110733352 AATAACTCTTTGAGTTA--AACACAGGAGCTTTTAGTTTATAAAATATTTCTTTGGAGAGAGATTGATTGAGAAAATATTAAAAAAAAAATTGCATCCCAAAGCAGATTTTAGTGCCTTAGGAATAAAGTGAAGCTTTAAGAGAATTTCT-GTTGGGAT--------------GGGATGGAGGCTGGCACA-TGC a score=9764.0 s hg17.chr17_random 675986 24 + 2618010 ctttaaaatttaggaatcagaata s panTro1.chr19 20317023 24 - 82489036 ctttaaaatttaggaatcagaata s mm5.chr11 24721072 24 - 121648857 CTTCAGAGCTTAAGGGTCAGATTA s rn3.chr10 24740069 24 - 110733352 CGTCAAAGTTTAGGAATCAGATTA s canFam1.chr9 16589560 24 + 53642819 CTTGAATGAATAAAAAAAGgaaca a score=4091.0 s hg17.chr17_random 676010 12 + 2618010 gtcctagactta s panTro1.chr19 20317047 12 - 82489036 gtcctagactta s mm5.chr11 24721581 11 - 121648857 ACTCTAGACTT- s rn3.chr10 24740093 12 - 110733352 GCACTAGACTTG s canFam1.chr9 16589584 12 + 53642819 acagtagactaa a score=43529.0 s hg17.chr17_random 676022 107 + 2618010 ccattaggaacagtggaaacttagactctaatgaag-ctgttcattcaaaatacaaa-gtgaatctgattttcaacc-taa----gattgcatgcttagcccaactttgaattt s panTro1.chr19 20317059 109 - 82489036 ccattaggaacagtggaaacttagactctaatgaag-ctgttcattcaaaatacaaaagtgaatctgattttcaaccgtga----gattgcatgcttagcccaactttgaattt s mm5.chr11 24721592 105 - 121648857 TTATTAGGAACAATGGAAAC-TATCCTCT-CTCAGA-TTACTTGTTTAAAATACTAG-GTGAATCTGATTTTCAACT-TAG----AAGTCTGTATGTAGTCAAACCATGAATTT s rn3.chr10 24740309 99 - 110733352 TCCTTAGGAACAATGGAAAC------TATAATAAA---TGATTGTTTAAAATACTAG-GTGACTCTAATTTTCAACT-TGG----AATTCTGTATTTAGTCAAACCATGAATTT s canFam1.chr9 16589596 111 + 53642819 ccatcaggaacaatggaaat-tagactctaatgaaatccattcctttaaaattatga-gtgtatatgatttttaacc-tagaattaattctatgcttagccaaatgataaattt a score=24357.0 s hg17.chr17_random 676129 127 + 2618010 cggagtaaaaatattttcagatttgcaaggtcatagaaaatttGATTCTTT-GTAAAAGATATTGGAG-TGGGGG--ATGGATTAGCTAAAGCATGACTTTCTACAGTGAAGAGAAAATGTCTAAAGTTGa s panTro1.chr19 20317168 129 - 82489036 cggagtaaaaatattttcagatttgcaaggtcatagaaaatttGATTCTTTTGTAAAAGATATTGGAGGTGGGGG--ATGGATTAGCTAAAGCATGACTTTCTACAGTGAAGAGAAAATGTCTAAAGTGGa s canFam1.chr9 16589715 129 + 53642819 taaaagaaagatatcttcatatttgcaaggttacagaaaatttaattcTTT-GTAAAAGATGTAGGAG-TGGGAGATATAGTTTGActaaaacttcactttctgtaataagaagaaaatgtgtaaagttga a score=16003.0 s hg17.chr17_random 676256 176 + 2618010 aaaatgaagaaataggccgtggtcgtggctcatgcctgtaatcccaacactttgggaggctgaggtgggaggattgcttgcccaggaattgaaggctgcagtgagccgtgattgtaccactgccctcgagcctgggcgacaga-gcaagactgtctcaaagaaaggaaaagaaaaaa s panTro1.chr19 20317297 177 - 82489036 aaaatgaagaaataggctgtggtcgtggctcatgcctgtaatcccaacactttgggaggctgaggtgggaggattgcttgcccaggaattgaaggctgcagtgaaccatgattgtaccactgccctcgagcctgggcgacagatgcaagactgtctcaaagaaaggaaaagaaaaaa a score=726.0 s hg17.chr17_random 676432 2 + 2618010 TA s panTro1.chr19 20317474 2 - 82489036 TA s rn3.chr10 24740556 2 - 110733352 CA s canFam1.chr9 16589856 2 + 53642819 ta a score=37222.0 s hg17.chr17_random 676434 155 + 2618010 GCTGTGTAAGCAAGACATTTAGAAGTCACAGAGTTTGAA---------ATTGATTGCTTCTAGGGG---CAGGGTGTGGGGAGTAGGGCC---TAGTGTTGAGCA-GGGCCTGGAGCTTACGTA------------------------TTTTAAACTGTGAACTATTACTTTGATAGAAATTTAAAAAA--TTTTAG- s panTro1.chr19 20317476 158 - 82489036 GCTGTGTAAGCAAGACATTTAGAAGTCACAGAGTTTGAA---------ATTGATTGCTTCTAGGGGGGGCAGGGTGTGGGGAGTAGGGCC---TAGTGTTGAGCA-GGGCCTGAAGCTTACGTA------------------------TTTTAAACTATGAACTATTACTTTGATAGAAATTTAAAAAA--TTTTAG- s mm5.chr11 24722046 169 - 121648857 GTTATATCAGGAAG-TGTTTAGAAAT--GAGAGTTAAAACCATTGGCTGCTGGATGCTTATGGAGAGTTAAGGGCACATTGGCTAGGACTCCATAGTTTATAGGT-AAGCCTGGGGCTACTGTATC--------------------AGTTTAAAAATATGAACTGTTA-GTTGATA-AAACCAGAGTAA--TTTTAG- s rn3.chr10 24740558 160 - 110733352 GTTATATAAGCAAG-TGTTTAGAAAT--GAGAGTTAAAACCATTGGCTGCTGGGTGCTTTTGGAGAGTTAAGGGCACACTGGCTAG---------GTTTATAGAT-AAGCCTGGGGCTATTGTATC--------------------AGTTTAAAACTACGAACTGTTA-GTTGATA-AAACTAGAGTAA--TTTTAG- s canFam1.chr9 16589858 167 + 53642819 agtatataagcaaagtatttagaaatCACAGAGT--------------------TGCTGCTGGTGC------GGTGTGAGGAGTAGGA-----TAGCATTGGTCAGGGGCCTACAGCTTATATATAAACCTTTATACTACCTTGTGAGTTTTAAAATACGAACTATTACTTTAATAGaaataagataaaatttttaaa a score=570.0 s hg17.chr17_random 676589 3 + 2618010 AGT s panTro1.chr19 20317634 3 - 82489036 AGT s rn3.chr10 24740718 2 - 110733352 -GC s canFam1.chr9 16590025 3 + 53642819 aat a score=-283.0 s hg17.chr17_random 676592 3 + 2618010 TTT- s panTro1.chr19 20317637 3 - 82489036 TTT- s canFam1.chr9 16590028 3 + 53642819 -tta a score=6972.0 s hg17.chr17_random 676595 24 + 2618010 AAATCTATATCATTACAGACTATA s panTro1.chr19 20317640 24 - 82489036 AAATCTGTATCATTACAGACTATA s mm5.chr11 24722604 21 - 121648857 AAGTATATATCATTAAGGGAC--- s canFam1.chr9 16590031 24 + 53642819 aaatctgtatcattacagactgta a score=11055.0 s hg17.chr17_random 676619 32 + 2618010 tatattctgtgtttacactgtga----aaaaattag s panTro1.chr19 20317664 32 - 82489036 tatattctttgtttacactgtga----aaaaattag s mm5.chr11 24722625 32 - 121648857 TGTATTCTCAGTTGATGCTGTGA----CAGTGTAAG s rn3.chr10 24741105 36 - 110733352 TATATTCTCTGTTGCTACTGTGACGTTAGAAATCAA s canFam1.chr9 16590055 28 + 53642819 ----ttatgtgataatgctatga----gaagattaa a score=2935.0 s hg17.chr17_random 676651 13 + 2618010 aagtcaatagaaa s panTro1.chr19 20317696 13 - 82489036 aagtcaatagaaa s mm5.chr11 24722657 13 - 121648857 AAATTAATAGCAG s rn3.chr10 24741267 13 - 110733352 AAACCAATAACAA s canFam1.chr9 16590083 9 + 53642819 -aatctgcaa--- a score=27028.0 s hg17.chr17_random 676664 88 + 2618010 aagagaaatgaaaaaa-atccctttttata-----tatttgaaaaaatt----atacctctgaataattgagtcaaagaagacttgttatggaaatta s panTro1.chr19 20317709 87 - 82489036 aagagaaatgaaaaaa--tccctttttata-----tatttggaaaaatt----atatctctgaataattgagtcaaagaagatttcttatggaaatta s mm5.chr11 24722810 92 - 121648857 AAAACCAATAACAACA-ACCCCTCTCCCCAAAAGTTGCACAAAAAAATTTCACATATTTAT-AATAATTGAGTCAAA----ACTTGTTAGGAAAGTTA s rn3.chr10 24741297 68 - 110733352 AAAAATAGCACAAAAA-TTTCTTTTTCACA-----TATTTAA--------------------AATAATTGAGTCAAA----ACTTGTTAGGAAAGTTA s canFam1.chr9 16590092 89 + 53642819 aagagaaacaaaaaaaaattcctcctcata-----tatttgggaaaatt----atacctctgaaaattaatgtcaaagaagatcttttatggaaatta a score=3429.0 s hg17.chr17_random 676752 12 + 2618010 g------aaaatatttag s panTro1.chr19 20317796 12 - 82489036 g------aaaatatttag s mm5.chr11 24722902 18 - 121648857 AGTTGGCAGAATACTTGG s canFam1.chr9 16590181 12 + 53642819 g------aaaatatttag a score=65880.0 s hg17.chr17_random 676764 438 + 2618010 aactgaataatgaaattaccacatatgaaacattagggataaacatgtttcatatgcagataaaata--ttaga----atatttagttaagaagaaagactgaaaattaattagctaagcattaaactc--------ataaaaacaaaaggtaacttggagaaagtagaag--------aaagttttaagagcagaaacaaatgaaataAGTGAAGTGAGGGGC-AGAAATATTAAAAAACTGATATTTAAAAATAGTCCCAAAAGATATATAAACCTAGCCAGTATA-------GAAAATAAAAGC-GTAGATTGAATTGTTGTTCAGCATTAGGAAATATGGTAACCATTTTTCAT-TAAATTTAAAAAGTTAAACATTCTATATTTATCAAAAGGAATCAG--TTTATTTGCTAGAATTCACCAGGGAAGAGTAGACAGAAACTTCTAACATGATAGAAGATATGTATT s panTro1.chr19 20317808 439 - 82489036 aactgaataatgaaattaccacatatgaaacattagggatAAACGTGTTTCATATGCAGATAAAATA--TGAGG----ATATTTAGTTAAGGAGAAAGACTGAAAATTAATTAGCTAAGCATTAAACTC--------ATAAAAACAAAAGGTAACTTGGAGAAAGTAGAAG--------AAAGTTTTAAGAGCAGAAACAAATGAAATAAGTGAAGTGAGGGGC-AGAAATATTAAAAAACTGATATTTAAAAATAGTCCCAAAAGATATATAAACCTAGCCAGTATA-------GAAAATAAAAGC-GTAGATTGAATTGTTGTTCAGCATTAGGAAATATGGTAACCATTTTTCATGTAAATTTAAAAAGTTAAACATTCTATATTTATCAAAAGGAATCAG--TTTATTTGCTAGAATTCACCAGGGAAGAGTAGACAGAAACTTCTAACATGATAGAAGATATGTATT s canFam1.chr9 16590193 435 + 53642819 aactggataattaaattactatat-----------------aacttg--tagtatacaagtaaaacaactcagaaggcatatttagttaagtagaaagactgaaaattaatgaactaagtattaagatcaaagttagataagaaaaatgggtaacttgaaaaaagcagaagacagaaacaaaaatttaagagcagaacttaaataaaaaatgga---gaggaacaaaaaatatttcaaaacAGAT-TTTTAAAATCATCCCAAAAGATACATAAACCgtgtgtgtgtgtgtgtgtgtgtgtAAAGGTAGTAGATCCAA---TTGTTCAGCATTAGAAAATATGACAG-----TATTA--TCAAGTAAAAAATTTCAAGATACTAGATTTATCACAAGAAGCTAGAATGTACTTGTTAGAATTCAGCATGTAAGAATTGACAGAAACTCCTA----GAGGGTGCatgtatatt a score=91.0 s hg17.chr17_random 677201 1 + 2618010 T s rn3.chr10 24742271 1 - 110733352 T a score=21547.0 s hg17.chr17_random 677202 90 + 2618010 acacacacacacacacacacacacacacacacacacacacac-GACATAATCtg-----tgccaagtactgttttaagt---gcctcaaaaatattaat s panTro1.chr19 20318247 72 - 82489036 acacacatacacacacacacacac-------------------GACATAATCtg-----tgccaagtactgttttaagt---gcctcaaaaatattaat s mm5.chr11 24723655 84 - 121648857 ACACACACACACACACACACACACACACACACACACACACGT-TTAAGAGCTGG-----AGTTGAGTAA------AAAT---GGGTCATAAATATTAAA s rn3.chr10 24742282 93 - 110733352 ACACACACACACACACACACACACACACACACACACACACACACACACAGTGTAAGAACAGTTGAGTAA------AAATGAAGGGTCATAAATATTAAA s canFam1.chr9 16590628 87 + 53642819 atatacatacatatacatgcatatgtaaatatgcatgtgtatgtata---tgtg-----tatgcagcat-gtatctatt---gtatcacaaatactaat a score=1272.0 s hg17.chr17_random 677292 3 + 2618010 tta s panTro1.chr19 20318319 3 - 82489036 tta s mm5.chr11 24723739 3 - 121648857 CTA s canFam1.chr9 16590715 3 + 53642819 tta a score=4161.0 s hg17.chr17_random 677295 32 + 2618010 tttagtcctttcaacaaccttttgaggtagAt s panTro1.chr19 20318322 32 - 82489036 tttagtcctttcagcaaccttttggggtagAt s canFam1.chr9 16590718 22 + 53642819 tttaatcct----------ttttgaaatagtt a score=27592.0 s hg17.chr17_random 677327 307 + 2618010 ttgttttgtgacaaagtctctctgtcacccaggctggagtatagtggtgcagtcatggctcactgcagcctcaaactc--ctgggtttaagtgattctcccacttcagcctcccatgtagctaggactgcctacacatgacagtgcatctggttaatttttaaatttttttgtagagacagggtctcgttatgttgcctaggctggtctcaaatgcctggcctcaggtgatcctcctacctcagagagaggatcttgccatcctcccaaat-gttgagattacaggcatgagccactacgccAGCCAGAT s panTro1.chr19 20318354 310 - 82489036 ttgttttgtgacaaagtctctctgtcacccaggctggagtatagtggtgcagtcacggctcactgcagcctcagactctcctgggtttaagtgattctcccacttcagcctcccatgtagctaggactgcctacacatgacactgcatctggttaattgctaaatttttttgtagagacagggtctcgttatgttgcctaggctggtctcaaatgcctggcctcaggtgatcctcctacctcagagagaggatcttgccatcctcccaaatcgttgagattacaggcatgagccactacgccAGCCAGAT a score=38186.0 s hg17.chr17_random 677634 209 + 2618010 TCtgttacttctattttgtagataaactaaggcagaaaaatgatttcagtaacttaaataatttgtccaaggtaacatagctagtaagtaacatagctgggattt-aaacccaagcagtttaactcaaaagtctgcacttttaaccaccacattgtgctatCTTTATTTTTCAAATTAAATATTTCAAAAACATAGTACATTTACATAAT s panTro1.chr19 20318664 209 - 82489036 TCtgttacttctattttgtagataaactaaggcagaaaaatgatttcaataacttaaataatttgtccaaggtaacatagctagtaagtaacatagctgggattt-aaacccaagcagtttaactcaaaagtctgcacttttaaccaccacattgtgctgtCTTTATTTTTCAAATTAAATATTTCAAAAACATAGTACATTTACATAAT s canFam1.chr9 16590740 194 + 53642819 tctgttatctgcactttataaataaactaaggcacaaacatggttt-----aattaaataacttgtccaaggtca-atagctagtaagtgacagagcctggatttcaaacccaagcagtttaattcacaagtctatacttctaaccaccacattatgctTTTTATATTTTT--AATT--GTATTGTAAACATATAATACATGGT------ a score=15922.0 s hg17.chr17_random 677843 115 + 2618010 TTGAAATTCAAATGCTATGCAATGAAATTTTGTTTGCCAGT-CTACCC-TGTCTTCTTTCTCAGCTCCATTCCTCAACAGAATGAAATGAAATTTT-------CCTTTCAAAACTATACCCTGC s panTro1.chr19 20318873 117 - 82489036 TTGAAATTCAAATGCTATGCAATGAAATTTTGTTTGCCGGTTCTACCCCTGTCTTCTTTCTCAGCTCCATTCCTCAACAGAATGAAATGAAATTTT-------CCTTTCAAAACTATACCCTGC s mm5.chr11 24724482 103 - 121648857 TTAAAATTCATATGCTGTCTGATGAAAT--------------CTCCACTTGTCCT-TCTGTCAG-TTCGCCCCTCAAAA----GTGATGAGTTTCTTATGT-ATCGTTAGAAACTCTATCATAA s canFam1.chr9 16590934 106 + 53642819 TTAAAATTCAAATGATATATAGTGAAAATTTG----------TCATCTTAATCCT-TCTCTCTGCTC---TTCTCAGAA----ACAACCAGTTTCCTGTGTAACCTTTCAAAACTGTTCCATGG a score=10614.0 s hg17.chr17_random 677958 29 + 2618010 TTTTGTAAGCATTTATATATATACTTTTT s panTro1.chr19 20318990 29 - 82489036 TTTTGTAAGCATTTATATATATACTTTTT s mm5.chr11 24724585 28 - 121648857 TTTTGTAGTCATTTATGTAC-TATTTTCT s canFam1.chr9 16591419 29 + 53642819 TTTTATAAGCATTTCTACATATACTTTTT a score=16127.0 s hg17.chr17_random 677987 80 + 2618010 AAGAacacagaaatcaccatgccatacataatgttctgcacctttcttcttttccccttaactg------taaatattggaggcca s panTro1.chr19 20319019 80 - 82489036 AAGAacacagaaatcaccatgccatacataatgttctgcacctttcttcttttccccttaactg------taaatattggaggcca s canFam1.chr9 16591448 83 + 53642819 AAGAACACAGAAATTAGCATGCCATGCATTATATTCTGCACC---CTTCTTTTCCCCTTACATGTGTGTATAAATAAAAGAGGTCA a score=8635.0 s hg17.chr17_random 678067 44 + 2618010 ttta-------------ttactagtatataagagatgtatcattcttGATAAGGTCT s panTro1.chr19 20319099 44 - 82489036 ttta-------------ttactagtatataagagatgtatcattcttGATAAGGTCT s canFam1.chr9 16591712 57 + 53642819 TTTAAAAAATAAGTCAGTTATCAGTATATAAGAGTTGCATCATCCTTGATGAGGACT a score=23274.0 s hg17.chr17_random 678111 111 + 2618010 GTTTACAGCAGACATGCTAAATGGT-GAAGCTATTTCAAATAATAACA--AACAAGTTAGAGAAGGTTATGACCATTAGTATAGTATGATTTAACATAATTTTTGATATTT-------------TTG s panTro1.chr19 20319143 111 - 82489036 GTTTACAGCAGACATGCTAAATGGT-GAAGCGATTTCAAATAATAACA--AACAAGTTAGAGAAGGTTATGACCATTAGTATAGTATGATTTAACATAATTTTTGATATTT-------------TTG s rn3.chr10 24743658 116 - 110733352 GGCTGCATCATTTTTAATAAATGTTAAAAGCCATTTCAAATAATACCA--GAGAAATTACATA----TATG-----TAATATACTATAAATTAGAATAGTGTTTTTTATCTGCTTCATATTTTATTG s canFam1.chr9 16591769 112 + 53642819 GTTTACAGCAGATGTGGTAAATTGT-GAAGTCATTTCTAATAAAAGCAGGAGCAAATCAGAGAAGGTTATGACCTTTTGTATACTAT-ACTTGACAAAGTTTGGGGGGTTT-------------TAA a score=5644.0 s hg17.chr17_random 678222 49 + 2618010 GCCAATATAACAA--------------------TTTTGAGCTAATATAACAACTG---------ATATAAATATTAGA s panTro1.chr19 20319254 49 - 82489036 GCCAATATAACGA--------------------TTTTGAGCTAATATAACAACTG---------ATATAAATATTAGA s mm5.chr11 24725352 46 - 121648857 GCCACTGTAGTAA--------------------ATTC---TTAATATAATGACTC---------ACAAAACTGCTAGA s rn3.chr10 24743786 78 - 110733352 AAACATATAATACCTAATTTAATTTTTGTTTTTTTTTAAGTTAATAGAACAATTCTTTTTTTAAAAAAATGTATTTGA s canFam1.chr9 16591881 43 + 53642819 ATGATTACAACAG--------------------TATA-----AATA-AGTAACTG---------ATATAATTATTGGA a score=5937.0 s hg17.chr17_random 678271 25 + 2618010 ACAGAAAAATTATCTTGCAGGTGTG s panTro1.chr19 20319303 25 - 82489036 ACAGAAAAATTATCTTGCAGGTGTG s mm5.chr11 24725398 16 - 121648857 AA---------ATCCTGCAAGTGTG s rn3.chr10 24744024 21 - 110733352 ATAGTAA----ATCCCACAAGTGTG s canFam1.chr9 16591924 25 + 53642819 ATTAAGAAATTATCTTATTTGAGTg a score=4587.0 s hg17.chr17_random 678296 16 + 2618010 ACAATATTGAATTATT s panTro1.chr19 20319328 16 - 82489036 ACAATATTGAattatt s mm5.chr11 24725414 15 - 121648857 A-ATTATTAAATTATT s rn3.chr10 24744045 16 - 110733352 ACTGTATTAAATTATG a score=-310.0 s hg17.chr17_random 678312 6 + 2618010 ATTAT------------T s panTro1.chr19 20319344 18 - 82489036 attatcattattattatt s rn3.chr10 24744061 6 - 110733352 AATAT------------T a score=27500.0 s hg17.chr17_random 678318 295 + 2618010 ATTAttttttgagatggagtctcgctctgtcgtccaggctggagtgcagtggcgcgatctcagctcactgcaagctctgcctcctgggttcatgccattctcctgtctcagcctcccgagtagctgggactacaggtgcccgccaccacgcccggctaattttgtttttgtatttttagtagagatggggtttcactgtgttagccaggatggtcttgatctcctgacctcgtgatcctcccgcctcggcctcccaaagtgctggaattacaggtgtgagccatcacgcccagcc s panTro1.chr19 20319362 295 - 82489036 attattttttgagatggagtctcgctctgtcgtccaggctggagtgcagtggcgcgatctcagctcactgcaagctctgcctcctgggttcatgccattctcctgtctcagcctcccgagtagctgggactacaggtgcccgccaccacgcccggctaattttgtttttgtatttttagtagagatggggtttcactgtgttagccaggatggtctggatctcctgaccttgtgatccgcccgccttggcctcccaaagtgctggaattacaggtgtgagccatcacacccagcc a score=1049.0 s hg17.chr17_random 678613 7 + 2618010 GACAATA s panTro1.chr19 20319657 7 - 82489036 GACAATA s canFam1.chr9 16592150 7 + 53642819 GGCTACA a score=22949.0 s hg17.chr17_random 678620 65 + 2618010 TTGAATTATTGAATATCTGT-----------TTG--AAACCATTGGCTTTCACATT---------TTCCCAAGG-----------------------------TTTGCTTTAAAAA s panTro1.chr19 20319664 65 - 82489036 TTGAATTATTGAATATCTGT-----------TTG--AAATCATTGGCTTTCACATT---------TTCCCAAGG-----------------------------TTTGCTTTAAGAA s mm5.chr11 24725866 95 - 121648857 TTAAATTATTGAATATCTGTGATACTGTTTATTGGAAAACCATTGAC-TTCACACT----CAAAGTTTTCAGGATCATT---------------TAGTCATT-TTTGCTTTAAATA s rn3.chr10 24744266 98 - 110733352 TTAAATTA-TGAATATCTGTGATAATGTTTATTGGAAAATC-TTGACTTCCATATTATACCAAAGATTTCAGGATCAGT---------------CAGTCATT-TTTGTTTTAAATA s canFam1.chr9 16592157 102 + 53642819 -TTGATTATTAAACATCTGTAAATATGT---TTG-AAAATCATTGGCTTTCACATT---------TTCCCAAGATTCTCTGGAGCACAGTTACCCAGTCATTCTTTGCTTTAAAAA a score=-1136.0 s hg17.chr17_random 678685 6 + 2618010 TG-------------AAGT s panTro1.chr19 20319729 6 - 82489036 TG-------------AAGT s mm5.chr11 24725961 19 - 121648857 AAGGTCTTGCCTCACAAAT s rn3.chr10 24744515 6 - 110733352 TG-------------AAGA s canFam1.chr9 16592259 6 + 53642819 TG-------------ATGT a score=75420.0 s hg17.chr17_random 678691 224 + 2618010 TAATCTTTTT--------------CAAGACAGATT---------GCACAAGTG-ATCTATC-------------------------------------TGATAATGAAGCAAATACTGAGC-----TTATCTTAGG----AGGACATTAATAACCTTTGTGTTTAGCCTCATCAAATTTAACAGTAATGCAAGCTATTATACAGCTAAGTAAAACC--TACTTTTCTGAAATTGGCACCATTCTGGGATAGTGATTAAATTACCATAATTATTGTAAGGTC-TAACAACCTTAGAAT s panTro1.chr19 20319735 224 - 82489036 TAATCTTTTT--------------CAAGACAGATT---------GCACAAGTG-ATCTATC-------------------------------------TGATAATGAAGCAAATACTGAGC-----TTATCTTAGG----AGGACATTAATAACCTTTGTGTTTAGCCTCATCAAATTTAACAGTAATGCAAGCTATTATACAGCTAAGTAAAACC--TACTTTTCTGAAATTGGCACCATTCTGGGATAGTGATTAAATTACCATAATTATTGTAAGGTC-TAACAACCTTAGAAT s mm5.chr11 24725980 282 - 121648857 AAATATCTATGAATTTGGAAGAAATAAAACCAATTAAATCTGAAGAAAAAGTT-CTTTATCTTTTCGGATTTTTATCAGATATAGAACTGGTCTTGAGTGATGATGGAGTAAATATTGAATGAACATAATCGTGTG----ATGTCGTCAGTAGCCTTTGCGTTTTGACTCTTCAAACTTAACAATTGTACAAGTTATCCGATAGCCACGTAAAGCA------TCTCTGATACTGGCATCATTCTGTAATAGTGGTTAGTATCCCATGATCACTGTAAGGTC-TGAAAACTGTAA--- s rn3.chr10 24744521 234 - 110733352 AAAAGTTCTC--------------TACTCTGATTT---------TTATCAGTTCATAGAAC---------------------------TGGTCTTGAGTGAAGATGGAGTAAATTCTGAATGAACATAATCTTAGGACGTACGTCTTCAGTAGCCTTTGTGTTT-GTCTCTTCAAACTTAACAGT-GTACCAGTTAT----CAGCCAAGTAAAGCA------TCTCTGATACTGGCATCATTCTGAAATAGTGATTAATATCCCATAATCATTGTAAGGGG-TGAAAGCTTAAGAAC s canFam1.chr9 16592438 230 + 53642819 TTATTTTTTT--------------CAA----GTTT---------TAATAGGTT-GTCATTC---------------------------TGTCTTC---TGGTAATGGAATAAATATGGAGC-----ATATATTTAA----AGAACATTGGTAACCTTTGTGTTTAGCTTCCCCAGACTTTACAGTCATGCCAACTATTTGATAGCTAAGCAAAACATTTTCTTTTCTGAAGTTGGCACCATTCTAGAATAGTGGTTAAATTACCATGATCATTGTAAGCTGACAGAAACTTTAGAAT a score=4246.0 s hg17.chr17_random 678915 16 + 2618010 TAGTGGCTGAGGGTCC s panTro1.chr19 20319959 16 - 82489036 TAGTGGCTGAGGGTCC s mm5.chr11 24726262 16 - 121648857 TAGTGGTTAATATCCC s canFam1.chr9 16592668 16 + 53642819 CATTTGTTAAGGATCC a score=1345.0 s hg17.chr17_random 678915 36 + 2618010 TAGTGGCTGAGGGTCCTG-AGGGTGGCATTTATATGG s canFam1.chr9 16592668 37 + 53642819 CATTTGTTAAGGATCCTACAGAGTGGTGTTTATTTGG a score=3569.0 s hg17.chr17_random 678931 20 + 2618010 -TGAGGGTGGCATTTATATGG s panTro1.chr19 20319975 20 - 82489036 -TGAGGGTGGCATTTATATGG s canFam1.chr9 16592684 21 + 53642819 TACAGAGTGGTGTTTATTTGG a score=6747.0 s hg17.chr17_random 678951 27 + 2618010 AGAAACACTGGTAGTTGTCAGCATTTT s panTro1.chr19 20319995 27 - 82489036 AGAAACACTGGTAGTTGTCAGCATTTT s rn3.chr10 24744755 25 - 110733352 AGAAACAC--ATTGTTTATAGCATTTT s canFam1.chr9 16592705 27 + 53642819 AGGAACACTAGGTGATACTGACATTTC a score=3543.0 s hg17.chr17_random 678978 23 + 2618010 GAAGAGT-CAAAAACAAGATAATA s panTro1.chr19 20320022 23 - 82489036 GAAGAGT-CAAAAACAAGATAATA s canFam1.chr9 16592732 24 + 53642819 AAAGACTGAAAAAACAGGATCACA a score=10969.0 s hg17.chr17_random 679001 115 + 2618010 AAAAGTGGTGACacatggcgaaaccctgtttctactaaaaacaaaaattagtcaggcctggtggcgcacgcctgtagttccagctactcaggaggctgaggcaggagaattgctt s panTro1.chr19 20320045 115 - 82489036 AAAAGTGGTGACacatggcgaaaccctgtttctactaaaaacaaaaattagtcaggcctggtggcgcacgcctgtagttccagctactcaggaggctgaggcaggagaattgctt a score=7015.0 s hg17.chr17_random 679116 128 + 2618010 gaacccgggagccgaaggttgcagtgagccaagattgcaccactgcactttagcctgggtgacagactgagactgagactccattttccaaagaaaaaaaGAGGTGGTGACACAAAGGCAACGATCTT s panTro1.chr19 20320160 120 - 82489036 gaacccgggagccg--ggttgcagtgagccgagattgcaccactgcactttagcctgggtgacagactgagact------ccattttccaaagaaaaaaaGAGGTGGTGACACAAAGGCAACGATCTT s canFam1.chr9 16592756 29 + 53642819 ---------------------------------------------------------------------------------------------------GGACCTGGTGACACAAAGGTAGAGACCTT a score=2092.0 s hg17.chr17_random 679244 6 + 2618010 TATTCC s panTro1.chr19 20320280 6 - 82489036 TATTCC s mm5.chr11 24726364 6 - 121648857 TGTTTT s canFam1.chr9 16592785 6 + 53642819 TATTCT a score=18285.0 s hg17.chr17_random 679250 37 + 2618010 CTTTTTGTATAAATTAATC---TCTTTATTTTTATAGCAT s panTro1.chr19 20320286 37 - 82489036 CTTTTTGTATAAATTAATC---TCTTTATTTTTATAGCAT s mm5.chr11 24726370 35 - 121648857 CCTTTTATAGAAATTGA-----TTTTTAGTTTCATAGCAT s rn3.chr10 24744780 35 - 110733352 CCTTTTATAGAAATTGA-----TTTTTAGTTTTATAGCTT s canFam1.chr9 16592791 40 + 53642819 CTTTATATACAGATTAATCTGTCTTTAATTTTTTTAGCAT a score=59285.0 s hg17.chr17_random 679287 129 + 2618010 TTAGTAGACTCATTAAATTTCTTATTATTAAAGTATTTCAAGATTTACTCCAGGTTTTACAATTGTTATACTCTCCTAAGCTTTA-----AACATTTAAGGTTTTTGATGGAAGTCCCAATT-TTTCAGTTGTTT s panTro1.chr19 20320323 129 - 82489036 TTAGTAGGCTCATTAAATTTCTTATTATTAAAGTATTTCAAGGTTTACTCCAGGTTTTACAATTGTTATACTCTCCTAAGCTTTA-----AACATTTAAGGTTTTTGATGGAAGTCCCAGTT-TTTCAGTTGTTT s mm5.chr11 24726405 108 - 121648857 TTAGCAAGCTTATCAAAT---------------TATTTCAAGGTATG---TAGGTTTTACA---GTTATAATTTCCTAAACTTTC-----AACATTTAC-GTTTTTGATGGATGTTGTGATTATCTTAGTTATTT s rn3.chr10 24744815 108 - 110733352 TTAGTAAGCTTATTAAAT---------------TACTTCAAGATATG---TAGGTTTTGCA---GTTATAATTTCCTAAACTTTC-----AACATTTAT-GTTTTTGATAGATGTTGTGATTATCTTAGTTGTTT s canFam1.chr9 16592831 125 + 53642819 TTAGTATGCTCATTAAAT----TTTTATTGAAGTATTTCAAGATCTACTTCAGGTTTTACAACAATTATACTCTCCTAAGCTTTA-----AACAAATAAGGTTTTAGGCAGAAGTTGCAATT-TTCTGGTTGTTT s danRer1.chr17 12314951 117 + 35757233 TTAGGTAGCTTGTAATTATGCATAATGTACAAATATTTCAATATTTACTCCAGGTATTATA--------ACTTTATTATGTTTTATAGGGAGCAGT----ATTTTAGTTACATGATG------TTTCAGCAAGTA a score=1413.0 s hg17.chr17_random 679416 3 + 2618010 ACT s panTro1.chr19 20320452 3 - 82489036 ACT s rn3.chr10 24744924 3 - 110733352 ATT s canFam1.chr9 16592956 3 + 53642819 AAT s danRer1.chr17 12315068 3 + 35757233 ATT a score=3327.0 s hg17.chr17_random 679419 18 + 2618010 TTATAAACGAGCTTGATG s panTro1.chr19 20320455 18 - 82489036 TTATAAACGAGCTTGATG s rn3.chr10 24744927 18 - 110733352 TTAATCATTATTTTATAG s canFam1.chr9 16592959 17 + 53642819 TTATAAA-GAGCTTATTG s danRer1.chr17 12315442 18 + 35757233 TTAATAAATATTTTGTTT a score=13531.0 s hg17.chr17_random 679437 62 + 2618010 TATGTTTCAAAAGGTTTACAACCCCAAACATAAATATT------TCATACATTGGA-----TATGAAATAAGG s panTro1.chr19 20320473 62 - 82489036 TATGTTTCAAAAGGTTTACAACCCCAAACATAAATATT------TCATACATTGGA-----TATGAAATAAGA s rn3.chr10 24745107 55 - 110733352 TATGTTTTAAAAGGTTTACCA-TCCAAATATAAGTAGG------TTGGTTATT-GA-----TATTAAG----- s canFam1.chr9 16592976 56 + 53642819 TATGTTTTAAAAGGTTTACCATCCCAAGCAGATAAATA------TTGGGTATT-GA-----AATAAAG----- s danRer1.chr17 12315460 68 + 35757233 TAAACTTCAGAAAATTTAGCACACTGAAAAAAAATATTCAAAGATGATTCCTTGGATTTACTAAAAAA----- a score=180704.0 s hg17.chr17_random 679499 358 + 2618010 TATCTAATTTGAGGAAGTG-GTGTAAATTATGTGTGTT----------GATAGGTATAAAATTAGACA--ATTTGGC--AATCCGTTCATTAATATGGTGTAAATTTGATAAA-T----------------------GAAATTTATTAAAAAGTCATTTTTTCTCCTA--CTT------GCCCTAAAATTCTACTATATGAATAGTAAGT-AAAT-------ACTTTGTAATTGGTATCATATAATGTGACACTAATTA-AACTTATTAATGATTTTTAAATA--CTTTAA----CTTGTGTTTTGTTTGAATTTCAGGTAATAACTCTTTCCAATACTTTGTATTTTGTTTAGTATGCCACTTTTTGGAAGT------GGTCACTGTCAATATC-TTGTTATGGTTTGATGGCCTTGGAGATTTA s panTro1.chr19 20320535 358 - 82489036 TATCTAATTTGAGGAAGTG-GTGTAAATTATGTGTGTT----------GATAGGTATAAAATTAGACA--ATTTGGC--AATCCGTTCATTAATATGGTATATATTTGATAAA-T----------------------GAAATTTATTAAAAAGTCATTTTTTCTCCTA--CTT------GCCCTAAAATTCTACTATATGAATAGTAAGT-AAAT-------ACTTTGTAATTGGTATCATATAATGTGACACTAATTA-AACTTATTAATGATTTTTAAATA--CTTTAA----CTTGTGTTTTGTTTGAATTTCAGGTAATAACTCTTTCCAATACTTTGTATTTTGTTTAGTATGCCACTTTTTGGAAGT------GGTCACTGTCAATATC-TTGTTATGGTTTGATGGCCTTGGAGATTTA s mm5.chr11 24726758 334 - 121648857 TATCTAATTTGAGGAAACA-GTGTAGTTCCTA---ATG----------AATAGGTGTAAAATTAAAGA----TCAAC--CAACTGTTGGTTCATCTTG---GTATTTGATAAA-T----------------------GAAATTTGTCAAAAAGTCCTTTTTT---CTA--GTT------ACCTTAAAATTCTGTT-----AGTAGT------AAT-------GTTTTGTGATTAGTATTGTATAATGTGAAACTAAT------TTAATAATGATTTTTAAAAAATCTTTAA----CTTGTGTTTTGTTTGAATTTCAGGTAATTATCCTTTCCAATACTTTGTATTTTGTTTAGTAAACCACTCTTTGGAAGT------GGTCACTGTCAGTATC-TTGTTATGGTTTGATGGCCTTGGAGATTTA s rn3.chr10 24745162 334 - 110733352 TATCTAA-TTGAGGAAACA-ATGTAGTTCCTT---ATG----------AATAGGTGTAAAATTAAAGA----TCAAC--TGCCTGTTGGTTCATCATG---ATATTTGATAAA-T----------------------GAAATTTGCCAAAAAGTCCTTTTTTGT-CTA--GTC------ACCTTAAAATTCCATT-----AATAGT------AAT-------GTTTTGTGATTAGTATTGTGTAATGTGAAACTAAT------TTAATAATGATTTTAAAAAA-TCTTTAA----CTTGTGTTTTGTTTGAATTTCAGGTAATTATCCTTTCCAATACTTTGTATTTTGTTTAGTAAACCACTCTTTGGAAGT------GGTCACTGTCAGTATC-TTGTTATGGTTTGATGGCCTTGGAGATTTA s canFam1.chr9 16593032 349 + 53642819 TGTCTGATGGGAGGAGGCA-ATGTAAATTATGTAGGCA----------AACAGGTATAAAATTAGACA--ATCTGGC--AATCAATTCTTCAGTATGGTGTAAATTTGATAAATT----------------------GACATTTATTTAACAAGTCTTTTTTCTCCTGTTTTT------ACCCTAAAATTCTATA---TTAATAGT-----AAAT-------ATTTCATAATTCATATCATATA-----ACACTAGTTA-AATTTATTAATGATTTTTTAAAA--CTTTAA----CATGTGTTTTGTTTGAATTTCAAGTAATAACCTTTTCCAATACTTTGTATTTTGTTTAGTATGCCACTTTTTGGAAGT------GGTCACTATCAATATC-TTATTATGTTTTGATGGCCTTGGAGATTTA s danRer1.chr17 12315528 402 + 35757233 TTTTTGCGTTAAGTGGTTGTAAACAATTTATTTGTGTTGAATTTGAGAAAAAAAAATTAAGTTGAACATTATTAAACTTAATTTGTTTGTTTATATTC---AACACAAATAAA-TTGTTTGCAACAGTTGTGCATGCAAAACTTTTTTCAGTGCATGTTTGTGTTATA--CTTGTGAAGGCTCAAAGGTTCTCACTTGTAAAGCGAAAGTAAAATTAAAGTGATTTTGAAAGTGGAAT--TAAAATGACCCACTAGTAAGGACATTTCACAGGTTTTTTACTA--TTTAAAAAGGCTTGTGATTCAGCCAAAAT-------ATTTTTTTTTCTATTGGTTTCTA--ATGATTGG-----CATTTGTTGGGGTTGTGGTAGGCCATAGGCAATATCATTAACCTGATTTAAAAACAATGGAAGCCTA a score=80721.0 s hg17.chr17_random 679857 251 + 2618010 AAACCGAGTAAAAGTGTAAGCAGTCTTTCTTATTTAG--TTATGAGTTTTAAAACCACTTATGTTCCAACTAGGAAAAAATGCAAGTAGATTTACCATGA-AATATGAATTATATTTAAAAAACATCTTAACAGT------TGACTGACTTAGTGAAA--------------CAGACTGGGCAATTCCACTTATGGAATTGT-AACATAAAATTCCATCATATAGTTTCCATTAAAGGTAGTAGGTTTTTATAATCTGTTAGACGTTCTTTGCAA s panTro1.chr19 20320893 251 - 82489036 AAACCGAGTAAAAGTGTAAGCAGTCTTTCTTATTTAG--TTATGAGTTTTAAAACCACTTTTGTTCCAACTAGGAAAAAATGCAAGTAGATTTACCATGA-AATATGAATTATATTTAAAAAACATCTTAACAGT------TGACTGACTTAGTGAAA--------------CAGACTGGGCAGTTCCACTTATGGAATTGT-AACATAAAATTCCATCATATAGTTTCCATTAAAGGTAGTAGGTTTTTATAATCTGTTAGACGTTCTTTGCAA s mm5.chr11 24727092 219 - 121648857 AAACCAAGTAAAAGTGTAAGCAGCCTTTCTTATTTAG--TTATGAGTTTTAAATCCACTTTTGTTCCAAATC-GAAAAATTGAAAGTAGATTTTCTATG--GATATGAGTTA---TTAGAAAACATATTGACAGT------------------GAAAG--------------CAGACT-GCCAATTTCATCTGTGGGATTGT-AA-------------CAAGCAGTTCCCACTAAGGGTAATGCATTTTAAAAAT-TATTGTATTTTCTTCCTAA s rn3.chr10 24745496 187 - 110733352 AAACCAAGTAAAAGTGTAAGCAGCCTTTCTTATTTAG--TTATGAGTTTTAAGTCCACTTTTGTTACGAATAGGAGAAATTGAAAGTAGACTTACTATG--AATATGAGTTAGA-ATAGAAAACACCGTGACAGG------------------GAAAG--------------CATGCT-GCCAGTTTCACCAATA-------------------------------------------------ATTTTAAAAAT-TATTGTGTTTTCTTCGCAA s canFam1.chr9 16593381 236 + 53642819 AAACCGAGTAAAAGTGTAAGCAGCCTTTCTTATTTAC--TTACAAGTTTTAAATC--ATTTTATTCCAAATAGGAAAAGGCAAAAGTAGATTCCTCATGG-AATATGAATTATA--TAAAAGATATCTTAACAGT------TGACTTAGT---GAAAA--------------CAGACTGGTTAGTTCCATTTGTGGAATTTTCAATATAAAATTCAATCAAACACTT-----TAAAGGTAGTGGGTTTCTATAAT----TAGATATTCCTTGTAA s danRer1.chrUn 169565521 238 + 367113659 ACACCAAAATAAA---TAAACAACAACTGAAAACTGAGCTCATAAGTTCCATAACAACCT--------------------TGCATGAAGATGTAAAACAAGAAAATGAAATTAA-ATCAAGAACAAATCAAGAGCGTATAGCAACATAATAAAAAAAAAAAGTCTATCTCTTCATATCATGCCCTGTCGTTTATGTTGTGGT-GTCGCAAAA------TACATTGTTTACAATAATTATGTTTGGTATTTACAAT---TTAGACAACCACAT--- a score=16434.0 s hg17.chr17_random 680108 23 + 2618010 ACTTTATTAATGTGAATACATTT s panTro1.chr19 20321144 23 - 82489036 ACTTTATTAATGTGAATACATTT s mm5.chr11 24727510 23 - 121648857 ACCTTAATAGTATAAATATATCT s rn3.chr10 24745684 23 - 110733352 GCCTTAATAATGTAAATACATTA s canFam1.chr9 16593617 23 + 53642819 ACTTTATTAATGTGAATATATCT s danRer1.chrUn 169565759 23 + 367113659 TCTTGTTTTACATGTGTACATTT a score=29541.0 s hg17.chr17_random 680131 139 + 2618010 GCTTTTTTAAAAAAATTAAGTGAACTTCTAAAGAAAATAGa--------aattaaaaatttttaatttaaattttGCTTTATAGTTTAATTTTTT---AGTATC-ATTTAGAATTAT----CAATTATTTTACTATATCCATATATACTGTCCCA s panTro1.chr19 20321167 139 - 82489036 GCttttttaaaaaaattaagtgaatttctaaagaaaataga--------aattaacattttttaatttaaattttGCTTTATAGTTTAATTTTTT---AGTATC-ATTTAGAATTAT----CAGTTATTTTACTATATCCATATATACCGTCCCA s mm5.chr11 24727533 138 - 121648857 ACTTTTT---AAAAGCACAGTAAATTACTATAGAAACTAAAT-------CATTTAGTTATTTTCTTATATTTTTTGCCTTAGTTATTAATTTGTA---TCCATC-ATTAATAATTCT--TATAGTCTCATAACAATGTTAATAT-TATTGTCCTA s rn3.chr10 24745707 150 - 110733352 TCTGCTTTAAAAAG---CAGTAAATTCCTCTAGAAAATAGAGAGTAAAACACTTAGTTATTTTCTTACA-TTTTTGCATTAGTTATTAATTCTTTGTGTCCATC-TTTAATAATTCTTATAGAGTCTCATAACTATATTGTTACTTATTGTCCTA s canFam1.chr9 16593640 123 + 53642819 TCTTTTTTTTAAGGAT-TAGTGAATTCCTAAAGAAAATAGG--------GA----------------GAAATTTTATATTATAGCTAAATTCTTT---AGTATCAATTCAGAAATCTTTCACA-TTCTTTTACCATAT---TATTTACTGTTCCA a score=25847.0 s hg17.chr17_random 680270 123 + 2618010 GTAACCTGTCATTCTCTTTAAAGAAAAAAG---------------------------------------------------------------------------------------------------TATTCATTGTCCTCTTTAGATATT---TACAA-ATATCTGATTTCTAAAAAATAAACATCACAAATGTCTATTCAATTAAGCTTCAGTTGAGTTGTT s panTro1.chr19 20321306 123 - 82489036 GTAACGTGTCATTCTCTTTAAAGAAAAAAG---------------------------------------------------------------------------------------------------TATTCATTGTCCTCTTTAGATATT---TACAA-ATATCTGATTTCTAAAAAATAAACATCACAAATGTCTATTCAATTAAGCTTCAGTTGAGTTGGT s mm5.chr11 24727867 212 - 121648857 GTAATCTGTCATTCTTGTTAAAAGAAAAAGTATTCCCTGGAGTTTGGGCTATGGCTCAATGGCAGAGAACCTTTTTAGCATTATTCATGATGCCCTAGGTTCATCCTAG----CACACACACCAGAAAATATTCATTGACC-CTTGAGCTGTCACAGATCA-ATGTCTGATTTC--------AAACCATTCAGATGCCTTTTCAATTGAGCTTCAGTGAAGCAGTC s rn3.chr10 24745857 206 - 110733352 CTAATCTGTAATTCTTGTTAAAAGAAAAAGTAGTCCCTGGAGTTTGGGATATGGCTCAGTGGCAGAGAACCTTTTTAGCATTATTCATGATGCCCTGGGTTCATCTTAGCACACACACACACCAGAAAATATTCAATGTCC-CTTGAGATATCACAGACCAGATGTCTGGTTTT--------AAAA-----------CTATTCAGATGAGCTTTAGTTAAACCATC s canFam1.chr9 16593763 104 + 53642819 GTGATCTATCATTCTCTTTA----AGAAAG---------------------------------------------------------------------------------------------------TATTCATCGTCCCCCTCAGACA-----GACTA--------ATTTTTTAAAAGTAAGAGTCACAAACATTTATTCAAGTGAGCTTCAATTTT------ a score=14332.0 s hg17.chr17_random 680393 120 + 2618010 TTTTTCTCAGAATGATT---------------------------------------------------------------------------------------------------------------------AAGAATATAGCACTTTCATTAG---TGGTGACTTTGCTCTAAAGGTCTGAAATTTTCACTTA-AATTAC-TTTCAGAACCAGTTTGAGGCAT---------------------------------------CAGGCTA------------GAGACA---GTT s panTro1.chr19 20321429 120 - 82489036 TTTTTCTCAGAATGATT---------------------------------------------------------------------------------------------------------------------AAGAATATAGCACTTTCATTAG---TGGTGACTTTGCTCTAAAGGTCTGAAATTTTCACTTA-AATTAC-TTTCAGAACCAGTTTGAGGCAT---------------------------------------CAGGCTA------------GAGACA---GTT s rn3.chr10 24746067 139 - 110733352 TTGTTCGCAGCATGATT---------------------------------------------------------------------------------------------------------------------ATTTATGCAACACTATT-TTAG---TGCTTACTTTGCTAAAGGAGTCTAAAATTCTGTCTTA-----AC-TGTCAGAATCACTTAGTGACACATGAGAAAATAAGTTTAGCCA------------------CACGGCA------------GACACACGTGTT s canFam1.chr9 16593867 293 + 53642819 TTTCTCCCAGCATGATTACATTAAGAATCTGGCACTTTTAggtgcctgactggctcagtccattagagcatgtgactcttgatcttggcgttgagttcaggtcctacactgggcgcagagcttactttaaagaaaaaGAAATGGcactttctttagtgatgatgactttgctgcaaaggtctgaaattttcacttgaaattacttttcagaatgagtttgaggcacatatgaaaatcagtttaattacttaattaacatacttagtagaccacaatgttttatctagaaa---gtt a score=44963.0 s hg17.chr17_random 680513 126 + 2618010 TGTagtttgtcattcacttattctgtagactctcactccccataacttttggtcctttcc--aaaagcaaattcaattttataagatgaagatttgactttgagatcattcaaaag---agtgtCAGAGGg-- s panTro1.chr19 20321549 126 - 82489036 TGTTgtttgtcattcacttattctgtagactcgcactccccataacttttggtcctttcc--aaaagcaaattcaattttataagatgaagatttgactttgagatcattcaaaag---agtgtcagaggg-- s mm5.chr11 24728184 126 - 121648857 TGCCTTTTGTCCTTTGCCTATTGTATAGACTTGCACT-TGTGTGACTTTGAAACTTTCCA--AAGAACAAATTCAGTTTCA-GGCATGAA-ATTTGACTTGAAGGCCATATAAAAAGTTAATGTCAAAGTA-- s rn3.chr10 24746206 122 - 110733352 ----TTTAAGTAGAAGCCTGTTATATAGACTTCTACT-TGTGTGACTTTGAACCTTTCCG--AAGAGCTAATTCAGTGTCA-GGCATGAA-ATTTGACTTTAAGGCCATAGAAAAATTTAATGTCAAAGGA-- s canFam1.chr9 16594160 132 + 53642819 tgcagtttgtcattcacttactctgtaggcttggactgttcaagacttttggaccttttcaaaaaagtcaattcagttttgaaaggtgaagattttactttgagaacatccaaaagga-tatatcagagAGAG a score=28355.0 s hg17.chr17_random 680639 304 + 2618010 gctgggcacagtggctcatgcctgtaatcccagcacttcgggaggccaaggtgggtggatcacttgaggccaggagtttaagaccagctggccaacatggcaaacccctgtctctactaaaaatgcaaaaattagccaggcgtggtggtgcccgcctgtagtcccagctactcaggaggctgaggcacaattgcttgaacccaggaggcggaggctgcagtgagccgagatcacaccactgtactccagcctgggcaacagagtgagcctctgtctcaaaaaaaaaaa-----agagagaaagagaaaG s panTro1.chr19 20321675 309 - 82489036 gccgggcacagtggctcatgcctgtaatcccagcacttcgggaggccaaggtgggtggatcacttgaggccaggagtttaagaccagctggccaacatggcaaacccctgtctctactaaaaatgcaaaaattagccaggcgtggtggtgcccgcctgtagtcccagctactcaggaggctgaggcacaattgcttgaacccaggaggcggaggctgcagtgagccgagatcacaccactgtactccagcctgggcaacagagtgagcctctgtctcaaaaaaaaaaaaaaagagggagaaagagaaag a score=100.0 s hg17.chr17_random 680942 1 + 2618010 G s rn3.chr10 24746328 1 - 110733352 G a score=-114.0 s hg17.chr17_random 680942 1 + 2618010 G s canFam1.chr9 16594292 1 + 53642819 T a score=402372.0 s hg17.chr17_random 680943 1108 + 2618010 TCACAACATTTTGAACAATGTCAAATGTCATTGCTCTTTAGCGTTCCAAAATGACAATTTGAAACATTAGGATATAAAAG-TTTGGTATGATTGGTTAATTACTTTATAGTCATGCCCTATCTTTGATTTGTTAGACTTCCCATGCTTTAAATCTT-GATATACGTAGGGCCTTTAAAAT-GGTCAACTAAAAAGTCACCATTCCTC-----TACGT--TTTTTC-------GTGACTTGATTTGTAAAACACAGAATGGGA-TTACTGTTTTGCCATGCATCTGTATTTAGCAGATGATTACTAGataata-------------attataatttttta---tgttataaaaaaGAAAG--------TATATAAACTCAA--AAAAGCTCAC-TTTTTTGTCTAGATTGTTTTTGCTCTT---ATACAATAGAATACATATTTAAGTTGTATTTTTATTTGCatttaataatttattaattaaatGTATTTCTTTG----TCAGATTTCAAATGATTGAGGTGACTTGTAAGAATTTGTTTTATGCCCTGTTGCTGATCAA--ATCATTGGTCTTCCC--TATAGCTCCTTACAAAATTATGCAATCAGTGTTCCATTTGGAGTAAACATTTAGTGTCTTATCT----TGATAGAGTAATTGGCTACATTTCTCTTTCTATGCATGAAGTTG-TGTAAAAGGACCAATTCACATg-tataattggcagagagcatggattctggacttaaca---------ttttatcccattctcactacttactaattttatgac----actggacaagttatttagcttctcagcctcagtttcctcatctgaaaaaatgaggacaatatctacttccaggtttataaa-tagttatatata-ttttaaaagcactgtgcacaatagcacatatcaggcatttaagaataaatgtttgttTCCTTTCCTGTTCTTATTTTCACATAT--TGGTAGTTTGAGACTAAGTT----------AATAACTTTTTAGGCAGTCACCCTAAACATGACTTTCAAGAGTTATTTTAGGATTAGTCTGCCTTTTACTTTAGTAAGTACTGTATTCTCTCCATTGCCAGGAGGAATATTTGAAAAAGGA-AGGAATGATTTGAACATTGTAAATAGCTAACTGAATATAGTGTCTTGAGGACATA-TTTTTGGTA s panTro1.chr19 20321984 1110 - 82489036 tcacaacattttgaacaatgtcaaatgtcattgCTCTTTAGCATTCCAAAATGACAATTTGAAACATTAGGATATAAAAG-TTTGGTATGATTGGTTAATTACTTTATAGTCATGCCCTATCTTTGATTTGTTAGACTTCCCATGCTTTAAATCTT-GATATACGTAGGGCCTTTAAAATGGGTCAACTAAAAAGTCACCATTCCTC-----TACGT--TTTTTC-------GTGACTTGATTTGTAAAACACAGAATGGGATTTACTGTTTTGCCATGCATCTGTATTTAGCAGATGATTACTAGataata-------------attataatttttta---tgttataaaaaaGAAAG--------TATATAAACTCAA--AAAAGCTCAC-TTTTTTGTCTAAATTGTTTTTGCTCTT---ATACAATAGAATACATATTTAAGTTGTATTTTTATTTGCatttaataatttattaattaaatGTATTTCTTTG----TCAGATTTCAAATGATTGAGGTGACTTGTAAGAATTTGTTTTATGCCCTGTTGCTGATCAA--ATCATTGGTCTTCCC--TATAGCTCCTTACAAAATTATGCAATCAGTGTTCCATTTGGAGTAAACATTTAGTGTCTTATCT----TGATAGAGTAATTGGCTACATTTCTCTTTCTATGCATGAAGTTG-TGTAAAAGGACCAATTCACATg-tataattggcagagagcatgaattctggacttaaca---------ttttatcccattctcactacttactaattgtatgac----actggacaagttatttagcttctcagcctcagtttcctcatctgaaaaaatgaggacaatatctacttccaggtttataaa-tagttatatata-ttttaaaagcactgtgcacaatagcacatatcaggcatttaagaataaatgtttgttTCCTTTCCTGTTCTTATTTTCACATAT--TGGTAGTTTGAGACTAAGTT----------AATAACTTTTTAGGCAGTCACCCTAAACATGACTTTCAAGAGTTATTTTAGGATTAGTCTGCCTTTTACTTTAGTAAGTACTGTATTCTCTCCATTGCCAGGAGGAATATTTGAAAAAGGA-AGGAATGATTTGAACATTGTAAATAGCTAACTGAATATAGTGTCTTGAGGACATA-TTTTTGGTA s mm5.chr11 24728321 1038 - 121648857 CAACAACA-TTAAATCAATGTTAGACATCATTACT-TTTAGCATTTCAAAATGACATCCTGAAATATCAGGATATGACAG-TTTGGTATGATTGGCTAATCATTTTCC--TCATGTCT-------------TTAGAC-TCACATACTCTAGATCTT-GTTATAAATAAACACACGGAAAA-GATCATGTCCAAAGTCAACATTCTTTTCAAATACTT--TGTGTT-------GTGAGTTGATTTGTAGGGTGTGCAATGGA--TTATTGTTTTGCCATGTATCTGCGTTCAGCAGGTGAATACTAGATGTTATGAATACTAGGTGAATACAGATCTTCATTCTGCTATTTAACATAGCA--------CTTTTTTTTTTAG--CAGAAATCACACATATAGGCAAAATTGGTTTTACCTTT--AAAATGATAGGCTGTGTATTTAGGTTGCATTTGTGCT---------TAGCTTAGTAATT-----TCTTTCTCTGGTGCTCACA-CTCAGATGATCGA--------GTAA------GCCTTATGCCTTA--GTTGATCAA--ATAATTGCTCTTCCC--TATAATTCCTTACAAGAATATGCAATCAATGTTCTATCTGGATCAAGCA------AACTTGTCTTTAGTGGTAAAGTAATTGGCTACATTTTGTGTACTA------AAGTTATTTTTAAAAGACTAAAG-ATATGATGTAATTGGCCGCAAGCATG--TTTTAGGTGAAA------------------GCAGTCTTGCTACTTACTAGTTTCAGGACTTG-ACTTAACA---TTTTTAGT-------CCTTGATTTTCTCTTCTACAAAA--GGGGACAA----TACTTCCAACTTTATAAA-TATCCATAAATATTTTTAGAAATCTCATGCACAGAA--ACATGTCAGACATTTCATAATAAA----TGCTTTCTTTCCTATTTTTATCTTCATGTAT-GTGGTAATTTGAGACTTAGTG---------AAATTATTTTCTAAGCAGTCCCCCTAAATAAAACTT--AA----------AGGATTAGTTTGCCATTCGTGTCAGTGTGTAGAGTGTTCTCTCCAGTGCCAAAAGGAGTATTTGAGAAAGGAGATAAATGCTTTGAATATTGT-AGTAGCCTATTGAATGTAGTGTCTTGAGGGCATA--TTTTGGTA s rn3.chr10 24746335 1014 - 110733352 AATCAACA-TTGAATCAATGTCAGACATCATTACT-TTTAGCATTTC--ATTGACAGTTTGAAATATCAGGATATGATAG-TCTGGTCTGATTGGCTAATCATTTTCC--TCCTGTCT-------------TTAGAC-TCACACACTCTAGATCTT-GTTATAAGTAAACACACGGACA--GATCAAGTCCAAAGTCAACATTTTTTCCAAGTACTTTATGTGTT-------GTGACTTGATCTGTAGGACGTACAGTGGA-----CTATTTTGCCATGCATCTGAGTTCAGCTGCTGAATACTAGATATAG-------------AAT---TGTCTTCATTCTGTTACTAAAAATAGTACTACTTTTTTTTTTTTTTTAAGCAAAAAGTCACACATATGGGCAAAACTGGTTTTGCTTTT--AAAACAATAGGGTGCGTATTTAGGTTACGTTTGTGCT---------TAGCTTAGTAACT-------TCTCTCTAGTGCTCACA-CTCAGATGATTGA--------GTGA------GCCTTCTATCTTA--GTTGATCAAATATAATTGCTCTTCCC--TATAATTCCTTACAAGAATATGCAATCATTGTTCTATCTAGATCAAACA-----AATATTGTCCTTAGTGGTAGAGTAATTGGCTACATTTTGTGTGCTA------ACGTTATCTTAAAAAGGCTAAAG-ACGTGATGTAATTGACCGAGAACAAG--TTGTAGGTGAAA------------------GTGTTCTTGCTGCTTACTAGTTTAAGGACTTTCACTTAACA--TTTTTTC---------CCTTGATTTTCTCTTGTACAAAA--GGGGACAA----TTCTTTCAACTTTATAAACTATTCATAAACATTTTTAGAAGTCCCATGCACAGAA--ACA---CGGACATTTAA-----------TGTTTTCTTTCCTATTC-----TTCATATATTGTGGTAATTTGAGAGTTAGTG---------AAATTACTTTCTAAGCAGTCCCCCTAGATAAAACTT--------------AGGATTAGTTTGCCATTCATATCAGTCAGAAGAGTAGTCTCTCCAGTGCCGAAAGGAGTATTTGAGAAAGGAAACGAATGCTTTGAACATTTGTAATAGCTTATTGAATATAA-GTCTTGAGGGCATA--TTTTGGTA s canFam1.chr9 16594293 1094 + 53642819 CAAGAACATTTTGAACAGTGTCAG-TGTCATTGCTTTATGGCATTCCAAAATGACAGTTTAAAATATTGGGATATAAAAGTTTTGGAATGATTGCCTACTTACTTTATAGTCATACTATGTCTTTAATTAGTTAAAT-TCTCATGATCTAGATCCTGGTTATAAATAGGCACTTTAAAAG-GATCA-GTTAAAAGTCAACATTTTTC-----TGGTT--GTTTTTGGAGGGGGGGATTTAATTTGTAAAAT-TAGAATGGTA-TTATTATTTTGTCATGCATCTGAATTTAGTAGATGACAAATAGATATTA------------------TAATCTTTTTTCTGTGAC--GAAAGTAGG--------TATATATACTCAT--AAAACTCCTC---TTTTGTCTAGTTTGGTTTTGCCCTTATACAACAATAGAATATATATTCAGGTTGCATTTTTATTTGCATTTAGTAA-TTATTGAATACATGTATTTCTTTAATATTATCATTTCAAATGATTGAG-------GTGACTAAGTTTTTTATTTCCCTTTGCCAGCAAA--ATCATTGATCTTCCCTGTATGGTTCCTTACAAAAGTATGGAATCAGTGTTCCATTTGTATTGAACAGATAAGGTTTTATCC-TAATCATAGAGTAACTGGC-------------------ATGAAGTCC-TCTAAATGAACCAATTTgtatggcatca-tggcagagagcatgaattctggattaaacaggcctgaatttttatgtcattcttgctacttactaattgtgtgac----cttaagcaagttatttaacttttcagcctcagtttccttatctgaaaaaatggagaccataCCTACTTACAAGTTTCTAAA-TA-----------TTTTTAAAGCACCATGTACCGTA--GCATGCTATACATTTAATAATAAATGTTAATTTCCTTTCCTGTTTTTATCTTTATGTAT--TGGTGATTAGAGATTAAGTTCATAAAGTTAAAGAACTTTCTAAGCAGTCACCCTAAATATGATGT-TAAGGTTTACTTTAGGCTTAGTTTGCCATTTACTTTAGTAAATACTGTATTCTCTTCATTGCTTGGAGAAGTGTTTGAGAAAGGA-AAGAATGATTTGCATATTCTAAGTAGTTAACTAAGT-----GTTTTAAGGACATATTTTTTGATA a score=-2160.0 s hg17.chr17_random 682051 7 + 2618010 ACTG-TGT------ s panTro1.chr19 20323094 7 - 82489036 ACTG-TGT------ s mm5.chr11 24729359 13 - 121648857 CCTG-TATTTATAA s rn3.chr10 24747349 9 - 110733352 CCTA-TGT----TA s canFam1.chr9 16595387 8 + 53642819 ACTTCTAC------ s galGal2.chrUn 27909130 7 - 165033910 ACTG-TGC------ a score=9132.0 s hg17.chr17_random 682058 13 + 2618010 TTAACATCTCCAT s panTro1.chr19 20323101 13 - 82489036 TTAACATCTCCAT s mm5.chr11 24729372 13 - 121648857 TTAACATGTCAAT s rn3.chr10 24747358 13 - 110733352 TTAAAATGTCAAT s canFam1.chr9 16595395 13 + 53642819 TTAATATCTATAT s galGal2.chrUn 27909137 9 - 165033910 ----TGTACCCAT s fr1.chrUn 199211681 13 - 349519338 TGAACATTACTAT a score=267369.0 s hg17.chr17_random 682071 156 + 2618010 AAAAGTGTTTTTTATTTATCTTCAATCACAGGTACGGGAACCTTAAAGATAGATTTTGTTGGAGAGCTGAATGACAAAATGAAAGGTTTCTATAGAAGTAAGTATACTACCCCTTCTGGAGAGGTGCGCTATGCTGCTGTAACACAGTTTGAGGTA s panTro1.chr19 20323114 156 - 82489036 AAAAGTGTTTTTTATTTATCTTCAATCACAGGTATGGGAACCTTAAAGATAGATTTTGTTGGAGAGCTGAATGACAAAATGAAAGGTTTCTATAGAAGTAAGTATACTACCCCTTCTGGAGAAGTGCGCTATGCTGCTGTAACACAGTTTGAGGTA s mm5.chr11 24729385 151 - 121648857 AAAAAGGTC-----TTTATCTTCAATCACAGGTACAGGAACCTTAAAGATAGATTTTGTTGGAGAGCTGAATGACAAAATGAAAGGTTTCTATAGAAGCAGATACACCACCCCTGCCGGCGAGGTGCGCTATGCTGCTGTCACACAGTTTGAGGTA s rn3.chr10 24747371 155 - 110733352 AAAAAGATC-TGTATTCATCTTCAATCACAGGTACAGGAACCTTAAAGATAGATTTTGTTGGAGAACTGAACGACAAAATGAAAGGTTTCTACAGAAGTAGATATACCACCCCCGCCGGCGAGGTGCGCTATGCTGCTGTAACACAGTTTGAGGTA s canFam1.chr9 16595408 156 + 53642819 TAAAGTGGTTTTCATTCATCTTCAATCACAGGTACAGGAACCTTAAAGATAGATTTTGTTGGAGAGCTGAATGACAAAATGAAAGGTTTCTATAGAAGTAAATATACTACCCCTTCTGGAGAGGTGCGCTATGCTGCTGTCACACAGTTTGAGGTA s galGal2.chrUn 27909146 153 - 165033910 ACCAATGTC---CAATCTGCTTCTATTTCAGGGACGGGAACGCTGAAGATAGACTTTGTAGGGGAGCTGAATGACAAAATGAAAGGTTTTTACCGAAGTAAATATACCACCCCTACTGGAGACACACGCTATGCTGCTGTCACTCAGTTTGAGGTA s fr1.chrUn 199211694 155 - 349519338 GTAACTGTTCTCTGTACGTGTGCTG-CACAGGCTCTGGAACACTGAAGATAGACTTTGTTGGAGAGCTTAATGACAAGATGAAAGGATTCTATAGAAGTAAATATACAACTTCTGCTGGAGAGATCCGCTACGCTGCTGTCACACAGTTTGAGGTA s danRer1.chr11 6186185 144 + 27258617 AAAAGAACT---------TCTTGTTTTTCAGGTTCGGGATCATTGAAAATAGACTTTGTTGGAGAGCTGAATGACAAAATGAAAGGCTTCTATAGGAGTAAATA---CTCTTCTTCGGGTGAAGTCCGCTATGCTGCCGTCACACAGTTTGAGGTA a score=-13219.0 s hg17.chr17_random 682227 34 + 2618010 -------------TGGGTTATTCTTC---TCTAAAATAT----------TATTAT--------------------------------------------TCTTA s panTro1.chr19 20323270 34 - 82489036 -------------TGGGTTATTCTTC---TCTAAAATAT----------TATTAT--------------------------------------------TCTTA s mm5.chr11 24729536 31 - 121648857 -------------TGCATGGCTGTTG---TCACAAA-------------TGCTAT--------------------------------------------TCTTA s rn3.chr10 24747526 27 - 110733352 -------------TGTATGGC---TG---TCACTAA-------------TGCTAT--------------------------------------------TCTT- s canFam1.chr9 16595564 73 + 53642819 -------------TAG--TATTTTTC---TCTAAAA-------------TGTTATGATCTTAAAAAAATAAAAAGGAAAAAAATAATAAAATGTTATGATCTTA s galGal2.chrUn 27909299 37 - 165033910 -------------TGGGCTGTATTTCTGTTTTCAAGGAA----------TGTCAT--------------------------------------------TCTTA s fr1.chrUn 199211849 51 - 349519338 AAGTGACGGGGAGTGGGATGTTTGTC---TTTTGGGAATGTTTAGCTCATGTTA-------------------------------------------------- a score=-1583.0 s hg17.chr17_random 682261 9 + 2618010 ---AATTAGGCA s panTro1.chr19 20323304 9 - 82489036 ---AATTAGGCA s mm5.chr11 24729567 9 - 121648857 ---GTTTTTTTA s rn3.chr10 24747553 4 - 110733352 --------GGCA s canFam1.chr9 16595637 9 + 53642819 ---AAGTAGATA s fr1.chrUn 199211900 12 - 349519338 ACCTACTACTCA a score=-120.0 s hg17.chr17_random 682270 5 + 2618010 TTCTG------- s panTro1.chr19 20323313 5 - 82489036 TTCGG------- s rn3.chr10 24747557 5 - 110733352 TTTTA------- s canFam1.chr9 16595646 5 + 53642819 TTCTG------- s fr1.chrUn 199211912 12 - 349519338 TTTTATGTTGCG a score=9213.0 s hg17.chr17_random 682275 51 + 2618010 ACAAAGGTGTG-TTTATTATGTGGGGTGATTATTTGAGGCTAGGTGCCCTTG s panTro1.chr19 20323318 52 - 82489036 ACAAAGCTGTGTTTTATTATGTGGGGTGATTATTTGAGGCTAGGTGCCCTTG s canFam1.chr9 16595651 50 + 53642819 ACAAAG-TGTGTTCCATTAT-TTGCATGATTATTTCAGGCTAGGTGCCTTTG s fr1.chrUn 199211924 41 - 349519338 ACAAAAACATTTTGCA-----------GATATTTTGAATCTCGGTGGTTTTA a score=10915.0 s hg17.chr17_random 682326 50 + 2618010 GCCATGATTGTATTCACAATTTTAGAATTTTTATTTTATATTTAGCCATT- s panTro1.chr19 20323370 50 - 82489036 GCCATGATTGTATTCACAATTTTAGAATTTTTATTTTATATTTAGCCATT- s canFam1.chr9 16595701 51 + 53642819 GCCGTAATTATATTCATGATTTTGGAATTTTTATTTTATATTCAGCCAGTT a score=1750.0 s hg17.chr17_random 682376 12 + 2618010 ATCTCTATAGAA-- s panTro1.chr19 20323420 12 - 82489036 ATCTCTATAGAA-- s mm5.chr11 24729922 12 - 121648857 ACCTTTAAAAAA-- s canFam1.chr9 16595752 14 + 53642819 ATCTCCTTAATAGA a score=20867.0 s hg17.chr17_random 682388 57 + 2618010 AGGAGGGAATTAAGGGTATGGGTTGGGGAATGATTATATACAGTTA--TACACACAGAC s panTro1.chr19 20323432 57 - 82489036 AGGAGGGAATTAAGGGTATGGGTTGGGGAATGATTATATACAGTTA--TACACACAGAC s mm5.chr11 24729938 57 - 121648857 AGGAGGGAATGAGAGATATAGGTTAGAGAATGATAATATATTCCTG--TGTATATACAT s rn3.chr10 24748173 59 - 110733352 AGGAGGGAATGAGGGCTATAGGTTGGAGAGTGCTCGTATATTCATGTCTATGTACAGAC s canFam1.chr9 16595766 50 + 53642819 GGGAGAGAATTAGGGAAGTGGACTGGAGGATGAATACGTACAT-----CACAAAC---- a score=1562.0 s hg17.chr17_random 682445 7 + 2618010 ATTCAAA s panTro1.chr19 20323489 7 - 82489036 ACTCAAA s mm5.chr11 24729995 7 - 121648857 GCCCAGG s canFam1.chr9 16595816 7 + 53642819 ACACAAA a score=0.0 s hg17.chr17_random 682452 91 + 2618010 CACACGACACATTTTGATACCTGAATTGCCTATATACTGTGTACCTTTCTTAAAATCATTCTCTTAGTATTTGACACCTATGGCTTTTCCT a score=6916.0 s hg17.chr17_random 682452 39 + 2618010 CACACGACAC---ATTTTGATACCTGAATTGCCTATA-TACTG s panTro1.chr19 20323496 39 - 82489036 CACACGACAC---ATTTTGATACCTGAATTGCCTATA-TACTG s mm5.chr11 24730002 36 - 121648857 TA----ATGA---ACTTTTACATCAGATTTGCTCTTGTTACTG s canFam1.chr9 37046473 42 - 53642819 tatatgtCACAGAATTTCAATACCTGAATTGCTTTTA-TATTA a score=3395.0 s hg17.chr17_random 682491 13 + 2618010 TGTACCTTTCTTA s panTro1.chr19 20323535 13 - 82489036 TGTACCTTTCTTA s canFam1.chr9 37046515 13 - 53642819 TGTATCTTTCTTA a score=9802.0 s hg17.chr17_random 682504 39 + 2618010 AAATCATTCTCTTAGTATTTGACACCTATGGCTTTTCCT s panTro1.chr19 20323548 39 - 82489036 AAATCATTCTCTTAGTATTTGACACCTATGGCTTTTCCT s canFam1.chr9 37046732 39 - 53642819 AAATTATACTCTTAGTATTTGACATCTGTGGCTTTTCCT a score=3916.0 s hg17.chr17_random 682543 27 + 2618010 ACAGTATTATTAGCTGTTTTCTAGAAT s panTro1.chr19 20323587 27 - 82489036 ACAGTATTATTAGCTGTTTTCTAGAAT s canFam1.chr9 16595823 27 + 53642819 ATAGCATTACTATTAATTTGGTAGGAg a score=764.0 s hg17.chr17_random 682570 8 + 2618010 TCCTTTCC s panTro1.chr19 20323614 8 - 82489036 TCCTTTCC a score=7255.0 s hg17.chr17_random 682578 68 + 2618010 TTCTTTGACATCTTTTGTTTATCTTAC--------TGTAGTATCTGTGCTGTCTTTGATTTTTTTTCTCTCTCTCT s panTro1.chr19 20323622 63 - 82489036 TTCTTTGACATCTTTTGTTTATCTTAC--------TGTAGTATCTGTGCTGTCTTTGATTTTTTTTCTCTC----- s mm5.chr11 24730375 76 - 121648857 CTCTTTTTCTTTTTATATTGACTTTTCAGGGTTTTTTTGGTTTTTTTTTTGTTGTTGGTTTTTTTTTTGTTTGTTT a score=16170.0 s hg17.chr17_random 682646 193 + 2618010 Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacatatatatat--acacacatatatatatTTGCTGTCCTACGTAGGCCAGGATGATTTTTATTTGTCAGGTATTTGCAAATTATATAAATTGTTTTGAATCTGCTAGTCGTATTTTTAAGTGTTAAATCTAATTAAATTTATTTCTATAAATTTCAGTAT s panTro1.chr19 20323685 192 - 82489036 ---tgtgtgtgtgtgtgtgtgtgtgtgtgtgtACACATATATATATACACACACATACATATATTTGCTGTCCTACGTAGGCCAGGATGATTTTTATTTGTCAAGTATTTGCAAATTACATAAATTGTTTTGAATCTGCTAGTCGTATTTTTAAGTGTCAAATCTAAATAAATTTAGTTCTATAAATTTCAGTAT a score=14027.0 s hg17.chr17_random 682839 159 + 2618010 GGATAAAGAAACAATTCATGATATCCATTCTTATGTTTCTGCCCATATCCCTATATTGTTTGCTTGTTTGGGATAACCTAAAATTTTTTATCCAGTTTACTACTAATTTGTTTTACCTGATGTATCTTCTCTTTCAataattttatgttaccttctgtt s panTro1.chr19_random 35329684 157 - 57627672 GGATAAAGAAACAATTCATGATATCCATTCTTATGTTTCTGCCCATATCCCTATATTGTTTGCTTGTTGGGGATAACCTAAAATTTTTTATCCAGTTTACTACTAATTTGTTTTACCTGATGTATCT--TCTTTCAATAATTTTATGTTACCTTCTGTT a score=2977.0 s hg17.chr17_random 682998 17 + 2618010 tagaataatatttgcca s panTro1.chr19_random 35329841 17 - 57627672 TAGAATAATATTTGCCA s canFam1.chr9 16596725 17 + 53642819 TAAAACAAGTATTGCCA a score=175134.0 s hg17.chr17_random 683015 1065 + 2618010 cagatatttaggtttaattctgtgtttgaatgattccaatgcctttctctacccactttgaacactt---catcctggaatggttggctgatgtatgtctctaaacaatttttgttttaggagaaggtatgtgggta--atgtaattcctaaacctttgcttttctgaaaaatctttcatttgcctttatacatgaccagatttactgggtat---aTAGATTTGTTGATGAAAAAAG-GTAaaaagagcaacttttgacatccagaggttgt-ctggcactcacagctagcccgtgttattctccctattagacataa----tattacagaataccaactttagacaaggctacttgagaccataataaagtgagacaaaacaagg--gatccataattttgcctaggtaca-gtacatacaggatcactatgctacccgcaaaatatcaa--acatctccatctctcagttaaaatgagtgactact-gcttctttaccaattacggttttagatttgctcta-gtctggcctccgtatagataagatttattgagatacatacccatagaattgcctcataggacttcttgcagcactcaatctagagtgaatccctgtttacttagaccctcttccaaatcatgtaaaccaaatcccaaatcgt--atagtgggttctttcttacattcttatggagacaccagtggttccctgtggtgtgagttctctcttgcc---atgagtaataggcccagctcattcaaTTGTAAGAGTAG----TACAATCAGCttacaatttttcactttcaaaagtctgtgaatattgtttccaaagtcttctacatctcactttttcaagaggaggggtcacagactaaaatgtttcttcttcctttgta-ggtaagatgttgtttcgttttgctttattttcttcctgcttgcttgttaaattatatcttgata-tcgaaaatta--aactgt-----tttttaaaccaggtgttcacttttcattgatttttgcatagtacttggtgaaccctattgatttttagattcaggtaatttttcagtgtgaaagagttttt----ctgttatatct s panTro1.chr19 20324049 1062 - 82489036 CAGATATTTAG-TTTAATTCTGTGTT-GAATGATTCCAATGCCTTTCTCTACCCACTTTGAACACTT---CATCCTGGAATGGTTGGCTGATGTATGTCTCTAAACAATTTTT-TTTTAGGAGAAGGTATGTGGGTA--ATGTAATTCCTAAACCTTTGCTTTTCTGGAAAATCTTTCATTTGCCTTTATACATGACCAGATTTACTGGGTAT---ATAGATTTGTTGATGAAAAAAG-GTAaaaagagcaacttttgacatccagaggttgt-ctggcactcacagctagcccatgttattctccctattagacataa----tattacagaataccaactttagacaaggctacttgagaccataataaagtgagacaaaacaagg--gatccataattttgcctaggtaca-gtacatacaggatcactatgctacccgcaaaatatcaa--acatctccatctctcagttaaaatgagtgactact-gcttctttaccaattacggttttagatttgctcta-gtctggcctccgtatagataagatttattgagatacgtacccatagaattgcctcataggacttcttgcagcactcaatctagagtgaatccctgtttacttagaccctcttccaaatcatgtaaaccaaatcccaaatcgt--atagtgggttctttcttacattcttatggagacaccaggggttccctatggtgtgagttctctcttgcc---atgagtaataggcccagctcattcaaTTGTAAGAGTAG----TACAATCAGCTTACAATTTTTCACTTTCAAAAGTCTGTGAATATTGTTTCCAAAGTCTTCTACATCTCACTTTTTCAAGAGGAGGGGTCACAGACTAAAATGTTTCTTCTTCCTTTGTA-GGTAAGATGTTGTTTCGTTTTGCTTTATTTTCTTCCTGCTTGCTTGTTAAATTATATCTTGATA-TCGAAAATTA--AACTGT-----TTTTTAAACCAGGTGTTCACTTTTCATTGATTTTTGCATAGTACTTGGTGAACCCTATTGATTTTTAGATTCAGGTAATTTTTCAGTGTGAAAGAGTTTTT----CTGTTACATCT s canFam1.chr9 16596742 1039 + 53642819 CAGCTGTTTAGGCTTAAATCTGTGTTTCAGTTATTTCATTGCTTATCTTTAGCC-CTTTGAGCACTTCTGCATCCTGGAATGGTTGGCTGGAGTATGTCTCCAAATAATTTTC-TTTAAAGGGAGGATATGTGGGTGGTATATACTACCAGAGCCTTTGCACATCTG--AAATCTTTCATTTGCTTTAATACATGGCCAGTTTTACTGAATGTATAATAGATTTGGTGGGGGGTGgggagaaggaacagcagcccctgacatccaaaagttgtcctagcactcccagctagtc-----------tcttgtttgacataaacagcatcatagaacaccagccttagacaaggttac-tgagacgatgataaagtgaaacaaaacaagggtgcttcataatttcatctaaggtcacataaaatcaaggtcact-----------gaaataatgaacacaccctcctctcttagttaaaatgaatgactactaactactttaccaattacag-tttagtcttgctaaacagccctcctctctataggtaagatttgctgagatgtcatcccacagaattgcctcc---attttatgacagcacccaatttagagtgaatccc------ctcaattcatcct-------------gccaactcccaaattatacataataggttctttctcacacat-----------cccatggttcttcttagtgtgggttttcttttgctacaatgagtaataaacccaactt-ttcaaccataagagtAGTACATACAGTTGGCTTACAGTTTTTCTCTTTTAAACGTATATGAATGTTG-TTCCACAGTCATTCCTACCTCATTTTGTCAAGGGAAAGAAT--CAGACTGGAATATCTTTTTGCCCCTTTTAGGGTCACATATTGTTTTGTTTTGTTGTGTTTTCTTCCTGATTGCTTGTTATATTATTTCTTTGTACTTAAAAATTAAGAATTTTTACAATTTTTACACTTTTCATTAACTTTTCATTAGCTTCTGCATAGTAATTGGTGAACCCTGTTGATGTTGAGATTCAGA----TCTTCAGTATAGCCAAGTTTTTTCTCCTCCTACATTT a score=3934.0 s hg17.chr17_random 684080 44 + 2618010 TCACTGTGATATCCATTCCATTCCCTTCTCAGTTAATACTCAGT s panTro1.chr19 20325111 44 - 82489036 TCACTGTAATAGCCATTCCATTCCCTTCTCAGTTAATACTCAGT s canFam1.chr9 16597781 36 + 53642819 TCACTGTGGTTCGTGCTCTGCTCTCTC--------ATAATAGGT s danRer1.chr11 6186354 44 + 27258617 TTTTTTTCATGTTTGCTCGCTCACTTTCCCTGCCACTGTTTATT a score=12006.0 s hg17.chr17_random 684124 62 + 2618010 TTAGCTCTAGTATCTGTCTCTCAAATTATG-TTTAATTGCTTTTATCACTTTGTCCTTTAGAT s panTro1.chr19_random 35330966 62 - 57627672 TTAGCTCTAGTATCTGTCTCTCAAATTATG-TTTAATTGCTTTTATCACTTTGTCCTTTAGAT s canFam1.chr9 16597817 63 + 53642819 GTATATCTAATGTCTGTTGCTCAGATGAAGTTTTGATGGCTTTCATCACTCTGTTCTTCTTAT s danRer1.chr11 6186398 62 + 27258617 TTAGCTCTGTCATTAGTCTCGCTTTTTGTA-CTCAGTCACTTACTCTCCTCTGAGATCTTGAT a score=39616.0 s hg17.chr17_random 684186 262 + 2618010 ATTTTCAAA------------------CTTAAATCTTGTTATC--TGTCA-----TTAATTTCCTTTAGTATAAATTCATTTCTCTACTGCTGCTGCTTCTAATTTAAATGCTTCTGTGCTGCCATTTCTTTCCTTATACTCTCCCTTCTTTTCAGATGTCTTTTTTATTCATTGATAGAATTCATTATTTATTTAATGTTTTTGAGAATGTAGTCAGCCAAGTTTCTTCTACCT--------CTTTGgtttgtttgtttgtttgtttgttcgtttgtttgtttgtttTTTAGTc s panTro1.chr19_random 35331028 249 - 57627672 ATTTTCAAA------------------CTTAAATCTTGTTATCTATGTCA-----TTAATTTCCTTTAGTATAAATTCATTTCT---CTGCTGCTGCTTCTAATTTAAATGCTTCTGTGCTGCCATTTCTTTCCTTATACTCTCCCTTCTTTTCAGATGTCTTTTTTATTCATTGATAGAATTCATTATTTATTTAATGTTTTTGAGAATATAGTCAGCCAAGTTTCTTCTGCCT--------CTTTGgtttgtttgttt------------gtttgttcgtttgtttTTTAGTc s canFam1.chr9 16597880 281 + 53642819 ATCTTAGAAACTTTTTTTTTAGATACTTTTAAATCTTGTTATCCATGTTACTCACTTAATTTCCTTTGGTATAAATTCATTTCTTTACTGCTGCTGCTCCTAATTTCAATTTTTCTGTGCTATCATTTCTTTCCTTACACTCTA----CTTTTCAGATGTTTTATGTATTCTCTGAATGAATTCATTATTCATTCAACTTCTTTGAGAGTGCAGGCAGCCATCTAACATTTTCCTAGGAGAAACTTTTTTCCAGAAGTATGT----------GCTTCCTCTACCTCTATATAATT a score=25108.0 s hg17.chr17_random 684448 277 + 2618010 ggagccttgctctgtcgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcttcccaggttcgagccattctcctgcctcagcctcccgagtagctgggattacaggcatgtgtcaccatgcctggcttatttttgtatttttagtagagacggggtttcaccatgttgaccaggctggtctcgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctggaattacaagcatgagccactgcacccagtc s panTro1.chr19_random 35331277 276 - 57627672 ggagccttgctctgtcgcccaggctggagttcagtggtgcaatcttggctcactgcaacctccacctcccaggttcgagccattctcctgcctcagcctcccgagtagctgggattacaggcacatgtcaccatgcctggcttatttttgtatttttagtagaaacggggtttcaccatgttgaccaggctggtctcgaactcctgacctcaggtgat-cgcccacctcggcctcccaaagtgctggaattacaagcatgagccactgcacccagcc a score=8464.0 s hg17.chr17_random 684725 51 + 2618010 TGTTGTTTCTTTTTATGATACAGTATCTTG-------------------TCATTGGTTCCATTTTATTTA s panTro1.chr19_random 35331553 51 - 57627672 TGTTGTTTCTTTTTATGATACAGAATCTTG-------------------TCATTGGTTCCATTTTATTTA s canFam1.chr9 16598161 70 + 53642819 TACTCCTGCTTTTCATGGTACAGAATCTTGAATTGGTTCTTTTTTTTTTTCCTTTGTTCTATTTTGTTTA a score=2420.0 s hg17.chr17_random 684776 26 + 2618010 CTAAATAAATGGAAAATTCTGTTTAC s panTro1.chr19_random 35331604 26 - 57627672 CTAAATAAATGGAAAATTCTGTTTAC a score=14779.0 s hg17.chr17_random 684802 69 + 2618010 TGAAGTGTCTTTCCTTTATAACTGATACCCTGCAGAACCCCTAAGTTTTATTTTGCTTTCATAAGGTTG s panTro1.chr19_random 35331630 69 - 57627672 TAAAGTTTCTTTCCTTTATAACTGATACCCTGCAGAACCCCTAAGTTTTATTTTGCTTTCATAAGTTTG s canFam1.chr9 16598418 69 + 53642819 TAAAATTTCTTTCTTTTATAACTGGTATTCTACTGAACCACTAAACTTTATTTTGCTTTAATGAGTTTG a score=100.0 s hg17.chr17_random 684871 1 + 2618010 C s canFam1.chr9 16598487 1 + 53642819 C a score=300.0 s hg17.chr17_random 684871 1 + 2618010 C s panTro1.chr19_random 35331699 1 - 57627672 C s mm5.chr11 24732253 1 - 121648857 C a score=152036.0 s hg17.chr17_random 684872 432 + 2618010 TCTTTTTTAAATTTTTAATGAAAGAGTAAGGACTC---AAGTAGGTCAAGTGGCGACAGTTTTATGTGTAG--CATATGGAAGTGCCATTAAATGAATGACCTGTCTTGAATTGATAGAGCATCTGCCTTTATTCCCATTGCTGCCATTCCAGATAAAGAACAAAGCACATCAAAGAT--TGAGaatatttttattt----------------------------------------ttaat-----tcaaaaataaaaGCCAGAGAGGCAACTTACCAT-GTTTTCCCAACTTT------------------GA--------ATTCTTATAGCATACTC-TTTACTGTTCTGTGCTCTGTGTTGTGTTAACATTATTGATTTGAAGGCATTTGCATTAAATTTG-----------AAATGTTAAAATGTAAACAAAAATTTAGTTGTAAATAATTATA-----ATATATTGTTAAAATCCATAGCAGACACTGTTCCTGGAT-------------------------ATTTGCTGGAATGGCAGTGGTAGCA s panTro1.chr19_random 35331700 430 - 57627672 TCTTTTTTAAATTTTTAATGAAAGAGTAAGGACTC---AAGTAGGTCAAGTGGCGACAGTTTTATGTGTAG--CATATGGAAGTGCCATTAAATGAATGACCTGTCTTGAATTGATAGAGCATCTGTCTTTATTCCCATTGCTGCCATTCCAGATAAAGAACAAAGCACATCAAAGAT--TGAGaatatttttattt----------------------------------------ttaat-----tcaaaaataaaaGCCAGAGAGGCAACTTACCAT-GTTTTCCTAACTTT------------------GA--------ATTCTTATAGCATACTC-TTTACTGTTCTGTG--CTGTGTTGTGTTAACATTATTGATTTGAAGGCATTTGCATTAAATTTG-----------AAATGTTAAAATGTAAACAAAAATTTAGTTGTAAATAATTATA-----ATATATTGTTAAAATCCATAGCAGACACTGTTCCTGGAT-------------------------ATTTGCTGGAATGGCAGTGGTAGCA s mm5.chr11 24732254 454 - 121648857 CCATTTTTAATTTTT-----ATAGAATACTGTCTC--TAAGTAGGTCAGATAGTGA-GTTCTGATGTATAC--CATATAGACAGGCCATTAAATAAATGACTTGTCTCGAATTTATAGAGCATCTGTATTTAT---------TGTCATTCTAGATTAAGAAC--AGTGTATCAGAGAC--TTGGAATATTTTTATTTATTTATTATTAT-----ACATGTTTTTATTACTGTTTTGCTTATT-----GTTAATTTAAAACTCAGAGGCACCGTCGCTCATAATTTTCCCTAATTT------------------GA--------ATCCTTAAAGCTTGGCA-ATAAATGGTCTGTGCTTTGAGTTATATATGCTGTATTAG--TGAAGCCGTTCATGTTAAATCTG---AATGTTATAAGTATTTTAATAAAAGCAAAAATATAATTACAAATAATTCT-------CATTTTGTCATGATCTGCAGCAGA-ATAGTTGACAAAT-------------------------AACTGCTAATGTGACATTGGTAGC- s rn3.chr10 24750212 467 - 110733352 TCCCATTTTAATTTT-----AAAGAATGCTGTCTCTCTAAGTAGGTCAGATAGTGA--GTTCGATGTGTAG--CATATAGACAGGCCAGTAAGTAAACAGCCTGTTTCACATTTCCAAAGCATCTGTATTTAT---------TCTCATTCTAGATAAAGGACAGAGTGCATCAGAGAT--TGGGAATATTTTTACTTATTTATTATATTACCCAACATGTTTTTATTATTGTATTGTTTATTGTTAATTTAAAATAAAAACCAGAGGCACTTTCTCTCAT-ATTTTCCCTAATTT------------------GA--------ATCCTTACAGCATGGCA-TTAAATGGTCTGTGCTTTGGATTGTGTCTGCTGTGTTAG--GAAAGCTGTTCATATTAAATCTG--AAATGTTA-AAATATTTTAATAAAAGCAAAAATATAATTACAAATAATTCTC-----AT-TTTTGTCGTGATCTGCAGCAGG-ATAGTTGACAAAT-------------------------CATTGCTAAGGTAACAGTGGTAGC- s canFam1.chr9 16598488 492 + 53642819 TCTTTCTTTACTTTTAAAGAAAAAAAAGAGGTCTC----TTTAGGTCAAGTGGTGATAGTTTTATGTGTAGTATATATGGAAATGCCATTAAACAAATGATGTCTTTAGAATTGAAAGAGCATCTGTCTTTAT-TTCTTTGCTATCATTTCAGATGAAGAACAAAGTACATCAGAGATTCTGGAAATATTT----------------------------------------------TTGTT-----TTTGAAATAAAAGCCAGAGAGGCAACCTATTCT-ATTTTCTCAGCTATCCTTCTCAGTAAGGATAGGAGGCAACCTATCCTTACAGTGTACTCGTTGACCTTCCTATGCTCTGTGTTTTGT-AACGTTACTGC--TGAAGCCATTTACATTGAATTTTTGAAATGTTG-GAATGTTTTGTTAAAAGTAAAAATGTAATTCTGAATTATTCTAATACTATATATTGTTAAGATCTACAGCAGACCTAGTTCTTGGATTATTGTTTGTTTTTGTTTGTTTTTGCATTGTTGATGTGGCAAGGATAGTA a score=26975.0 s hg17.chr17_random 685304 70 + 2618010 AGTGTTGTCTTTTCTT--TCTAGTTAATGCCTAGCTTGTTGCCTGGCACTGAAGAGAAAGTAAATATTTGAA s panTro1.chr19_random 35332130 70 - 57627672 AGTGTTGTCTTTTCTT--TCTAGTTAATGCCTAGCTTGTTGCCTGGCACTGAAGAGAAAGTAAATATTTGAA s mm5.chr11 24732708 68 - 121648857 AGCATTATGTTTCCTT--TGTAGTCAGCACTTAGCTCATTACCTGACA--GAATGGATAGTAAATCTCTGAA s rn3.chr10 24750679 66 - 110733352 AGCATTATGTTTAC----CGTAGCCAGCACTGAGCTCATTACCTAGAA--GAACAGAAAGTAAATACTGGAA s canFam1.chr9 16598980 70 + 53642819 AGCCTCAGGTTTTCTC--TGTAGTCACTGCCTAGTGTGTTGCCTGGCATGGAGTAAGAAGTAAACAAGTGAA s fr1.chrUn 199214471 72 - 349519338 AGTGTTTTTTCTTTTTACTAAAGATAGTCACGAGTTCTGTATTTTTAAATGGAGCCAGTATCAACATTGAAG a score=-1089.0 s hg17.chr17_random 685374 4 + 2618010 ---CAAG s panTro1.chr19_random 35332200 4 - 57627672 ---CAAG s mm5.chr11 24733080 4 - 121648857 ---TAAA s fr1.chrUn 199214543 4 - 349519338 TTTT--- a score=-611.0 s hg17.chr17_random 685374 4 + 2618010 ---CAAG s fr1.chrUn 199214543 4 - 349519338 TTTT--- a score=2333.0 s hg17.chr17_random 685378 6 + 2618010 GGAATG s panTro1.chr19_random 35332204 6 - 57627672 GGAATG s mm5.chr11 24733084 6 - 121648857 AAAAGA s canFam1.chr9 16599050 6 + 53642819 GGAATG s fr1.chrUn 199214547 6 - 349519338 TAAATG a score=0.0 s hg17.chr17_random 685384 6 + 2618010 AATGAA a score=657.0 s hg17.chr17_random 685384 3 + 2618010 AAT s panTro1.chr19_random 35332210 3 - 57627672 AAT s mm5.chr11 24733090 3 - 121648857 AAG s canFam1.chr9 16599056 3 + 53642819 GAT a score=1440.0 s hg17.chr17_random 685387 3 + 2618010 GAA s panTro1.chr19_random 35332213 3 - 57627672 GAA s mm5.chr11 24733093 3 - 121648857 AAA s rn3.chr10 24751095 3 - 110733352 GAA s canFam1.chr9 16599059 3 + 53642819 GAT a score=-2641.0 s hg17.chr17_random 685390 12 + 2618010 TGACAGAGG----------------GAA s panTro1.chr19_random 35332216 12 - 57627672 TGACAGAGG----------------GAA s mm5.chr11 24733096 28 - 121648857 AAAGAGAGAAATAATTGACTAATACAAA s rn3.chr10 24751098 10 - 110733352 TGACAGC------------------AAA s canFam1.chr9 16599062 12 + 53642819 AGAAATAAG----------------ACG s fr1.chrUn 199214553 12 - 349519338 TGACAATGT----------------AAG a score=109386.0 s hg17.chr17_random 685402 127 + 2618010 ATGGCGACTGCTTTATGAAATAACTTGTTAGGTTAATTCTAAGGTATTTATAT---TTCATATTC-----TTTTCTTAAGGCTACTGATGCCCGAAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s panTro1.chr19_random 35332228 127 - 57627672 ATGGTGACTGCTTTATGAAATAACTTGTTAGGTTAATTCTAAGGTATTTATAT---TTCATATTC-----TTTTCTTAAGGCTACTGATGCCCGAAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s mm5.chr11 24733124 130 - 121648857 ACAGCAATGATTTCATGAAACAACCTCTGAGATTAATTAAATGGTATTGATATGAGTTTATATTT-----TTTTCTTAAGGCTACTGATGCCCGAAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s rn3.chr10 24751108 118 - 110733352 ACAGCAATGATTTCATGAAACAATCTCCGAGGTTAATTAAATGGTGTTTATGT-----------------TTTCCTTAAGGCTACTGATGCCCGAAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s canFam1.chr9 16599074 126 + 53642819 ATGACAGTTACTTCATGAAATAGTT-----GGTTAATTCGGTAGGatttattt----ttatatttttatattCTTTTAAGGCTACTGATGCCCGGAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s galGal2.chrUn 27910148 106 - 165033910 ATTGCAGCAGCTTCCTG---TGATTTCCTGGGTTAAT---------GTTCTTT-----------------CTTCTTTCAGGCTACTGATGCTCGCAGAGCTTTCCCTTGCTGGGATGAGCCTGCTATTAAGGCAA s fr1.chrUn 199214565 107 - 349519338 ---ATGTGGAACCCAGGAACTAACT-----AGTGTCT------GTGCTCACCC---ACC-----------CACACACCAGGCCACGGATGCCCGCAGAGCTTTCCCCTGCTGGGATGAACCAGCCATTAAAGCCA a score=118424.0 s hg17.chr17_random 685529 59 + 2618010 CTTTTGATATCTCATTGGTTGTTCCTAAAGACAGAGTAGCTTTATCAAACATGGTATGT s panTro1.chr19_random 35332355 59 - 57627672 CTTTTGATATCTCATTGGTTGTTCCTAAAGACAGAGTAGCTTTATCAAACATGGTATGT s mm5.chr11 24733254 59 - 121648857 CTTTTGATATCTCGCTGGTTGTGCCTAAAGACAGAGTGGCTTTATCAAATATGGTATGT s rn3.chr10 24751226 59 - 110733352 CTTTTGATATCTCGTTGGTTGTGCCTAAAGATAGAGTGGCTTTATCAAATATGGTATGT s canFam1.chr9 16599200 59 + 53642819 CTTTTGATATCTCATTGGTCGTTCCTAAAGACAGAGTAGCTTTATCAAACATGGTATGT s galGal2.chrUn 27910254 59 - 165033910 CTTTTGATATTTCATTGGTGGTTCCTAAAGACAGAGTAGCTTTGTCAAATATGGTAAGT s fr1.chrUn 199214672 59 - 349519338 CCTTTGATATCACCCTAATAGTTCCCAAGGAGAGAGTAGCCTTGTCAAATATGGTACGT s danRer1.chr11 6192587 59 + 27258617 CTTTTGACATCACCCTCATCGTCCCAAAGGACAGAGTAGCCTTGTCGAATATGGTATGT a score=3090.0 s hg17.chr17_random 685588 2 + 2618010 AT s panTro1.chr19_random 35332414 2 - 57627672 AT s mm5.chr11 24733313 2 - 121648857 AT s rn3.chr10 24751285 2 - 110733352 AT s canFam1.chr9 16599259 2 + 53642819 AT s fr1.chrUn 199214731 2 - 349519338 AT s danRer1.chr11 6192646 2 + 27258617 GT a score=38533.0 s hg17.chr17_random 685590 141 + 2618010 GTGTTTATAAGTTTATCTAAAATTTTAATAGGC-TTTAgcagatttagtttgctgattagatgggataatatgaaaccacctaccacagtgctggtatattataggaacataaataatagttttcttTATTTTCAATAAGCC s panTro1.chr19_random 35332416 141 - 57627672 GTGTTTATAAGTTTATCTAAAATTTTAATAGGC-TTTAgcagatttagtttgctgattagatgggataatatgaaaccacctaccacagtgctggtatattataggaacataaatattagttttcttTATTTTCAATAAGCC s mm5.chr11 24733315 127 - 121648857 GTGCTAATAAGC----------TTTTAATAG---TCTGGTATATTTGCTCTCTTGATTAAGTAGGA-GATGTGAAGTCACCTAGCATAGTGCTTGCTGCTAACAGAAGCATTGTCCCTGG-TCCCTTTAGTTTCCGTAAGTC s rn3.chr10 24751287 128 - 110733352 GTGCTAATAAAC----------TTTTACTAGTC-TCTGGTGACCCTGCTTTGTTGATTAAGTAGGA-TACATGGAACCACCCAGCATAACGCCTACTACAGGCAGAAGCATCGTCTTTCA--GCCTTTGTTTTCAGTAAGTC s canFam1.chr9 16599261 108 + 53642819 GTGTTTGTAAGTATATTTAAATTTTGAATAAGTGTTTAGAACATTTAGTTTGCTGGTTAGATGTAATAGGATGAAACCACTTAGCACAATTC----------------------------------TTATTTTCAGTAAACT a score=3266.0 s hg17.chr17_random 685731 10 + 2618010 TCTTTTTCTT s panTro1.chr19_random 35332557 10 - 57627672 TCTTTTTCTT s mm5.chr11 24733442 10 - 121648857 CTGTTTTCCT s rn3.chr10 24751415 10 - 110733352 CTGTTTTCCT a score=12533.0 s hg17.chr17_random 685741 140 + 2618010 TCt---tttttttttttctgtagagttggggtctcattatgttgcccaggctggtctcaaactcctggggtcaatctgtcttcctgcctcagcctcccaaagtgctgggattagaggcatgagccaccatgcccagccAAGAC s panTro1.chr19_random 35332567 143 - 57627672 TCTTTCtttttttttttctgtagagttggggtctcattatgttgcccaggctggtctcaaactcctggggtcaatctgtcttcctgcctcagcttcccaaagtgctgggattacaggcatgagccaccatgcccagccAAGAC a score=6952.0 s hg17.chr17_random 685881 57 + 2618010 CTCTTTTTCTTGATAGCTTTATTTTTGGAGGATTTTGTCCTTGTCAAATTCCTTGTT s panTro1.chr19_random 35332710 57 - 57627672 CTCTTTTTCTTGATAGCTTTATTTTTGGAGGATTTTCTCTTTGTCAAATTCCTTGTT s canFam1.chr9 16599369 42 + 53642819 CTCTTTTTTTAAATTGCCTTATCT-----GGAGTTTCC----------TTCCTCGTG a score=1675.0 s hg17.chr17_random 685938 10 + 2618010 AAATACATTT s panTro1.chr19 20326401 10 - 82489036 AAATACATTT s canFam1.chr9 16599411 10 + 53642819 GAAGAAATTT a score=0.0 s hg17.chr17_random 685948 9 + 2618010 ATAAGATTA a score=555.0 s hg17.chr17_random 685948 6 + 2618010 ATAAGA s panTro1.chr19 20326411 6 - 82489036 ATAAGA a score=819.0 s hg17.chr17_random 685954 3 + 2618010 TTA s panTro1.chr19 20326417 3 - 82489036 TTA s mm5.chr11 24733835 3 - 121648857 TTA a score=8545.0 s hg17.chr17_random 685957 42 + 2618010 TCTACTTCTTTTAATTTAGAGAGGTAAATTGACAAGTTTAAT s panTro1.chr19 20326420 42 - 82489036 TCTACTTCTTTTAATTTAGAGAGATAAATTGACAAGTTTAAT s mm5.chr11 24733838 42 - 121648857 TCTACTTTTTAAAACGGAAGGACATAAATAAGGAACATTAAT s canFam1.chr9 16599421 41 + 53642819 CATACAAACTTTAATTTGGAAAACTAAGT-GACAAGTTTAAT a score=3096.0 s hg17.chr17_random 685999 29 + 2618010 AGATTTATAGTAACTAAAAGCAAAAGTCT s panTro1.chr19 20326462 29 - 82489036 AGATTTATAGTAACTAAAAGCAAAAGTCT s canFam1.chr9 16599462 22 + 53642819 ----AAATATTGTCTGAA---AAAAATCT a score=28464.0 s hg17.chr17_random 686028 312 + 2618010 TGggctggatatggtggcttacacctgtcatcccagcactttgggaagtcaaggtaggcagatcgcttgaggtcaggagttgaagaccagcctggccaacatggtgaaatcctgtccttactaaaaatacaaaaattatctgagtgtggttgcacacacctgtagtcccagctacttgggaggctgaggtgggaggatcacttgaacccaggaagcggaggttgtagtgagctgagatcacaccactgcactccagcctgggtgacagagccagaccctatctcagaaaaaaaaagaaaaaaaaaagaaaaa s panTro1.chr19 20326491 311 - 82489036 TGggctggatatggtggcttacacctgtcatcccagcactttgggaagtcaagttaggcagatcgcttgaggtcaggagttgaagaccagcctggccaacatggtgaaatcctgtccttactaaaaatacaaaaattatctgagtgtggttgcacacacctgtagtcccagctagttgggaggctgaggtgggaggatcacttgaacccaggaagcggaggttgtagtgagctgagatcacaccactgcactccagcctgggtgacagagccagaccctatctcagaaaagaaaag-aacaaaaaagaaaaa a score=4719.0 s hg17.chr17_random 686340 29 + 2618010 GGTCTTGACTTATTAAATGTCATAAGAAa s panTro1.chr19 20326802 29 - 82489036 GGTCTTGACTTATTAAATGTCATAAGAAa s canFam1.chr9 16599484 27 + 53642819 GACTTT--CTCATTAAATGCCAAAAGATA a score=52194.0 s hg17.chr17_random 686369 560 + 2618010 gccaggtacagtgactcttgcttgtaatctcagtgctttgggaggctaaggcaggaggattgcttgaggccaggagtttgacaccagtctgggcaacatagtgagacctcatttctacaaaagatttaaaacttaaaagttagccaggtatggtggcaggtgtctgtaatcctaactacttgggaggctaatgtgggaggatctctcgaacttaggagtttgaggctacagggagccatgattgcgccactgtattccagcctgggtgacagaacaagaccccatctcttaaaaaaaaaaaaaTAggccaggcatggtggctcatacctgtaatcccagcacttcaggaggctgaggcaggtggatcatttgaggccaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccagatatggtggcaggcacctgtaaccccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcggaggctgcagtgagttgagatcgcgccactccgctccagc s panTro1.chr19 20326831 558 - 82489036 gccaggtacagtgactcttgcttgtaatctcagtgctttgggaggctaaggcaggaggattgcttgaggccaggagtttgacaccagtctgggcaacatagtgagacctcatttctacaaaagatttaaaacttaaaagttagccaggtatggtggcaggtgtctgtaatcctaactacttgggaggctaatgtgggaggatctctcgaacttaggagtttgaggctacagggag-catgattgcgccactgtattccagcctgggtgacagaacaagaccccatctcttaaaaaaaaaaaaa-aggccaggcatggtggctcatgcctgtaatcccagcacttcaggaggctgaggcaggtggatcatttgaggccaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccagatatggtggcaggcacctgtaaccccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcggaggctgcagtgagttgagatcgtgccactccgctccagc a score=208.0 s hg17.chr17_random 687013 16 + 2618010 GTTAAAAAAATCCAAA s mm5.chr11 24733944 10 - 121648857 ATTAAAAAAA------ a score=8386.0 s hg17.chr17_random 687029 148 + 2618010 AGATGTAGCTGCATAATGAAGTATATTTAGGTTTCTGGCTGTTTGTATTCTTGGAATGTAT------------------------------TCTCTTCA----CCAGTGTTATTGATCTCATTCATGAACAGGGTAAGCATTCCCCACTTGAAGTGTGTTGTCTAGGACTG------------------TCTTGTGTGGG------ s mm5.chr11 24733954 122 - 121648857 ----------------------ATATTTAGGTTTTTGGCTGATTATATTTTC---ACATAT------------------------------GCTCTTAA----CTATTGTTATTGATCTCATTCATAAGTATGATAAGCTTTTATC-CTTCAACCTGATTGTCTGAGACCA------------------CCTTGTTTAAG------ s canFam1.chr9 16599514 202 + 53642819 AGATATAGCCATATAATGAATTATATCTAGGTTTTTGGTTGGTTGTATTCTT---ATGTATAATGTCTGCCTGAAAGATAGACATATAACGTTTCCTCAAATTTTGATGTCATT-ATCCCTTTCATAAATAGAGGAAGCATTTACTGCTTGAAATATATTGTTTAAAACAGAGAGTACTCTATATAACCTCTAATATGAATCTGGA a score=13273.0 s hg17.chr17_random 687177 261 + 2618010 GAACTTGGAAAAACCTGCTGCA-CCTGAAAATAACTCTTTTATGTAT---TTACTGGGGGAGAGCATCCCATAAATAGAATGTCATTCTCTTCACACATATTCTTAGAAGAGGAGGCTAATACATTAAGCAGAAATATTCATTCACACTTTAGTATGAGTGAATTTATCAG-TGTGTTCTTGAATAAGTCTTCCTTGGAAGGAAGAATAGAGAGAGCTTGAGGAAATGGAG--CCTGAATAGGAAAAAGAGGGAGAACACCAAAG-GAA s canFam1.chr9 16599716 267 + 53642819 GAACTTGGAAAAGCCTAATGTAACCTGAAAATAACTGCCTTTTGCCTCCTTTATTGGTGGAGAAAATTTCATAGTTAGAATGCCATTCTCTTCTCAAATATTCTT-GAAAAGGAGGCTAATAAAT-AAACTGAAATATTACTTTACAATTTAGTATGAATGAATCTATCAGGTTTGTTTTTGAATAAGTCTTCCTCGGAAGAAAGAATACAGAGATTTTGAAGAAGTAGAGAGCCTGAGTAGGAAATGAAGGGGTAACAGCAAAGAGTA a score=10215.0 s hg17.chr17_random 687438 120 + 2618010 ATTAGGGACTCCAAAGGTAAAGTTGAAATTTCTTCACAAATAAGCTTAGAGCCAACTTTGG--TAGAGAATGCCCTCGATCTAGAAGT---TTGTATCCTTTGAAATGGGAGATTCTACAATTAT s rn3.chr10 24752125 113 - 110733352 GTTGGGAATTCCCTAGGTAAAGGTGAAGTTTTAC--------ATCTTCCAG--AGCTTTGG--GACACGGTATTTGGAATCTAGAACTCACTAATACTCTTTAAGATGTAAGATTCCATAATCAC s canFam1.chr9 16599983 121 + 53642819 ATTAGGGACTCTGTAGGTAAAGTGGAGATTCCTTCACAAATTTGCCTAGAGCCAGCCTTGGTTTAGAGAGTGCTCTAAATTTAGAAAT---CTGTACCCTTTGACATGT-AGATTTCACAATGAC a score=-219.0 s hg17.chr17_random 687558 7 + 2618010 ATTATAt s rn3.chr10 24752238 7 - 110733352 TTTTATT a score=2890.0 s hg17.chr17_random 687872 66 + 2618010 TTTTTATTAATAGTCATTTTCTCCTAAACTTATGTCAGTTGAAAAGTATGAAGCCCTTACTTAAAT s canFam1.chr9 16600104 66 + 53642819 CCTTTATTAATAATTAGTGCCTTCTATCCTTATTTCACTTGAAAAGTATTGAGGTCTTACTTTAGA a score=2644.0 s hg17.chr17_random 687938 27 + 2618010 CATCCCAATGCCTGGCTTATAATAAGT s rn3.chr10 24752461 25 - 110733352 CGTCCCAATGTTTGTCATGTAG--ACT s canFam1.chr9 16600170 27 + 53642819 CATCCCAGTGCTTAGCATGTAATAGGA a score=10429.0 s hg17.chr17_random 687965 68 + 2618010 ATTCGAGAAAAGTCCATTCCTCTTTTCTCTCACAGGTCCT-TGGTAGTTTTAACACTTCAGCCTCCAGC- s mm5.chr11 24734355 64 - 121648857 ATTCAAGAGAGGTTA--TCTTCTCTTTCTGAGTAAGCTCT-TAGT-GTTTTAATACTTT-GCTTCCAAT- s rn3.chr10 24752486 64 - 110733352 ATTCTGGAAAAGTTA---CCTTGTTTTTAAAGTAAGCTCTATGGT-GTTTTAACATTTT-GCTTCCAAT- s canFam1.chr9 16600197 66 + 53642819 ATTCAAGAAAAGTTA---TGTCTTTTCTCTCACAGATACT-TGGTAGTTTTAACACTTGAGCCCTCAAAC a score=3718.0 s hg17.chr17_random 688033 6 + 2618010 TTCTTA s panTro1.chr19_random 41888555 6 + 57627672 TTCTTA s mm5.chr11 24734419 6 - 121648857 TTCTTA s rn3.chr10 24752550 6 - 110733352 TCCTTA s canFam1.chr9 16600263 6 + 53642819 TTCATG a score=0.0 s hg17.chr17_random 688039 23 + 2618010 GTATGAGTGTTTTATCAGACCAC a score=5931.0 s hg17.chr17_random 688039 19 + 2618010 GTATGAGTGTTTTATCAGA s panTro1.chr19_random 41888561 19 + 57627672 GTTTGAGTGTTTTATCAGA s mm5.chr11 24734425 19 - 121648857 GTGTAAGGACTTTGTCAAA s rn3.chr10 24752556 19 - 110733352 GTGTAAGAACTTTCTCAAA a score=-255.0 s hg17.chr17_random 688058 4 + 2618010 CCAC---------- s panTro1.chr19_random 41888580 4 + 57627672 CCAC---------- s mm5.chr11 24734731 14 - 121648857 TCACTGAAGGAAAT s rn3.chr10 24752864 14 - 110733352 CCACTGAAAGAAAA a score=23688.0 s hg17.chr17_random 688062 95 + 2618010 TTTCCTTC-TTAAAG-----------ACAGCAT-AAAAGCACTGGA----TGAATTGGGGTAGAGAAATAAGCCATGCTAGAATAGAAAGGGGGAAAGAG-ATGCAATAAAGC s panTro1.chr19_random 41888584 95 + 57627672 TTTCCTTC-TTAAAG-----------ACAGCAT-AAAAGCACTGGA----TGAATTGGGGTAGAGAAATAAGCCATGCTAGAATAGAAAGGGGGAAAGAG-ATGCAGTAAAGC s mm5.chr11 24734745 97 - 121648857 TTTTCTTG-TAAGAGCAATGACCTTCATAATAT-AAAAGCACTGAA-----GAACTTAGTTA---AAATA--CCATTCTA----AGAAAGGGGAAAGGAGAAAATACTTAAGC s rn3.chr10 24752878 98 - 110733352 TCTTCTTC-TAAGAGCAAAGACCTTCATAATATAAAAAACACTGAT-----AAATTTGATTA---AAATA--TTATTCTA----AGAAAAGGAAAGGAAAAAAGTAGTTATGC s canFam1.chr9 16600269 101 + 53642819 TCTCCTTCTTAAGAGGAAGGATTTTAACAGCAT-AAGAGCAGTGAATGAATGAATTGGGGTAGATAAGTAAGCAGTGTTG----GAGAGGGGGAAGGGAG-AGGCAG------ a score=11233.0 s hg17.chr17_random 688157 17 + 2618010 CTACA-GTTTTTGGCTGG s panTro1.chr19_random 41888679 17 + 57627672 CTACA-GTTTTTGGCTGG s mm5.chr11 24734842 18 - 121648857 CTATAGGTTTTTGCCTAG s rn3.chr10 24752976 18 - 110733352 CTATAGGTTTTTGCATAG s canFam1.chr9 16600370 16 + 53642819 -CACA-GTTTTTGGCTAG s danRer1.chr11 6193006 17 + 27258617 CCACT-GTTTTTAGTTTG a score=6815.0 s hg17.chr17_random 688174 14 + 2618010 TATTTGCTCTATGG s panTro1.chr19_random 41888696 14 + 57627672 TATTTGCTCTATGG s mm5.chr11 24734860 14 - 121648857 TATTTACTCTAAAA s rn3.chr10 24752994 14 - 110733352 TATTTACTCGAAAA s canFam1.chr9 16600386 14 + 53642819 AATCTACTTTAAGG a score=766.0 s hg17.chr17_random 688188 4 + 2618010 TA-TT s panTro1.chr19_random 41888710 4 + 57627672 TA-TT s mm5.chr11 24734874 4 - 121648857 TA-CC s rn3.chr10 24753008 4 - 110733352 TA-CC s canFam1.chr9 16600400 5 + 53642819 TATTT s fr1.chrUn 199214763 4 - 349519338 TG-TT a score=1076.0 s hg17.chr17_random 688192 25 + 2618010 AATGTAAACCTATTT-----AAATTTTTC----------T s panTro1.chr19_random 41888714 25 + 57627672 AATGTAAACCTATTT-----AAATTTTTC----------T s mm5.chr11 24734878 35 - 121648857 AATATAAATCTCCTT-----AAATTATTCTTGTTTTCTGT s rn3.chr10 24753012 35 - 110733352 AATAAAAATCTCCTT-----AAATTTTTCTTGTTTTCTGT s canFam1.chr9 16600405 32 + 53642819 AACGTAAGTCTGTTT-----ATATGTTCT---CTTTCTCT s fr1.chrUn 199214767 28 - 349519338 GCCTTTAACATATTTAGAACAGATGCCA------------ s danRer1.chr11 6193344 25 + 27258617 AATTTGAATCCTAAT-----ATGTGTTAT----------T a score=444520.0 s hg17.chr17_random 688217 314 + 2618010 TTTTTTTCTTTCTTAAAGAATGTAATTGACCGGAAACCATACCCTGATGATGAAAATTTAGTGGAAGTGAAGTTTGCCCGCACACCTGTTACATCTACATATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCTGTGTTTACACTCCTGTTGGCAAAGCAGAACAAGGAAAATTTGCATTAGAGGTA--AATGTACTTGA--AGAGG----ATTGTTCCA-GCAGTCCATAACTCCAGGTTG--------------GGGAATTTACATTTCTGGTCAATTATTAG----TACAGTTATTTATAATT s panTro1.chr19_random 41888739 313 + 57627672 TTTTTTTCTTT-TTAAAGAATGTAATTGACCGGAAACCATACCCTGATGATGAAAATTTAGTGGAAGTGAAGTTTGCCCGCACACCTGTTATGTCTACATATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCCGTGTTTACACTCCTGTTGGCAAAGCAGAGCAAGGAAAATTTGCGTTAGAGGTA--AATGTACTTGA--AGAGG----ATTGTTCCA-ACAGTCCATAACTCCAGGTTG--------------GGGAATTTACATTTCTGGTCAATTATTAG----TACAGTTATTTATAATT s mm5.chr11 24734913 318 - 121648857 TTTTGTTTTTCCCTTAAGAATGTAATTGACAGGAAACCATATCCTGATGATGAAAATTTAGTGGAAGTGAAGTTTGCTCGCACACCTGTTATGTCTACGTATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCCGTGTTTACACCCCTGTTGGCAAAGCAGAGCAAGGAAAGTTTGCGCTCGAGGTA--AATGTCCTTGA--AGAGG----ATTGCCCCA-GTAGTCCACAGCTGCAGGCTG--------------GGGAGTTTACATCATCAGTTACTGGTTCGGTTATTCGGTTATTTGTGATT s rn3.chr10 24753047 313 - 110733352 TTCTGTTTTCC-TTTAAGAATGTCATTGACAGGAAACCATACCCTGATGATGAAAACTTAGTGGAAGTGAAGTTTGCTCGCACACCTGTTATGTCTACATATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCCGTGTTTACACCCCTGTTGGCAAAGCAGAGCAAGGAAAATTTGCACTAGAGGTA--AATGTCCTTGA--AGAGG----ATTGTTCCA-ACAGTCTATAACTCCAGGTTG--------------GGGAATTTACATTTCTGATCAATTATTAG----TACAGTTATTTATGATT s canFam1.chr9 16600437 314 + 53642819 CTCTCTCTTTTTTTAAAGAATGTAATTGATCGGAAACCATACCCTGATGATGAAAATGTAGTAGAAGTGAAGTTTGCCCGCACGCCTGTCATGTCTACATATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGATCAAAAGATGGTGTGTGTGTCCGTGTTTACACCCCTGTTGGCAAAGCAGAGCAAGGAAAATTTGCGTTAGAGGTA--AATGTACTTGA--AGAGG----ATTGTTCCA-ACAGTCCATAACTCCAGGTTG--------------GGGAATTTACATTTCTGATCAATTATTAG----TACAATTATTTATAATT s galGal2.chrUn 27911251 330 - 165033910 TTCTCTTTCATGTTGAAGAATGTCATTGACCGGAAGCCATACCCAGATGATGAAAACCTGGTGGAAGTCAAGTTTGCTCGCACCCCCATCATGTCGACGTATCTGGTGGCGTTCGTGGTGGGAGAATATGACTTTGTAGAGACCAGGTCCCTAGATGGTGTCTTAGTGCGTGTTTACACTCCTGTGGGCAAAGCTGAGCAAGGAAAGTTTGCATTAGAGGTA--AATGCACTCAG--GGTGATTTTGTTATTGCT-GTTGTGAGCTCCTGCAGGCTGTGTGTGCCTCTCCTGGGGTCACACAGATCTGCCAGAGCTTTGG----GAGGGT--GTTCTGCTT s fr1.chrUn 199214795 317 - 349519338 TTTAACCGTCTCTTCCAGAATGTCATCGAACGAAAACCGTATCCAGATGATGAAAACCTGTTGGAAGTGAAGTTTGCCACCACACCCATCATGTCCACATACCTCGTAGCTTTTGTCATTGGTGAATATGACTTTGTGGAGAACCAGTCTTCAGATGGTGTAACAGTACGTGTGTACACGCCTGTTGGAAAGGCTGAACAAGGGAAATTTGCCCTGGAGGTAAGAACATCATTAATCTGAGG----ATTCCTGAACATGGTTGACAGCTTGATGTCT--------------CAGTACCTAAAAT--TGTTTGAGCCTTAG----TGATGGTATCTTTTATT s danRer1.chr11 6193369 279 + 27258617 GTTTCCTTTTCTTTGAAGAATGTTGTTGACCGAAAGCCATATGCAGAGGATCAGAGTCTGGTGGAGGTGAAGTTTGCCACAACACCCATCATGTCCACCTATCTAGTGGCATTTGTCATTGGCGAGTATGACTTTGTGGAGAGCCAGTCGTCAGATGGTGTGACAGTTCGTGTGTATACTCCTGTTGGAAAGGCAGAGCAAGGGAAATTTGCACTAGAGGTA---------------TGACA----ACT-------ACAGTCTGTGAGACC----CA--------------GGATATTTTAAAATCTGTT--------------TA----TATTTACAAAC a score=0.0 s hg17.chr17_random 688531 2 + 2618010 TA a score=1911.0 s hg17.chr17_random 688531 1 + 2618010 T s panTro1.chr19_random 41889052 1 + 57627672 T s mm5.chr11 24735231 1 - 121648857 T s rn3.chr10 24753360 1 - 110733352 T s canFam1.chr9 16600751 1 + 53642819 T s galGal2.chrUn 27911581 1 - 165033910 T s fr1.chrUn 199215112 1 - 349519338 T a score=1365.0 s hg17.chr17_random 688532 1 + 2618010 A s panTro1.chr19_random 41889053 1 + 57627672 A s mm5.chr11 24735232 1 - 121648857 A s rn3.chr10 24753361 1 - 110733352 A s canFam1.chr9 16600752 1 + 53642819 A s galGal2.chrUn 27911582 1 - 165033910 A a score=6827.0 s hg17.chr17_random 688533 49 + 2618010 AT----CTGAAAGTTG---TGCTACTTG--GTTTATTTTTAATAGAATTTAGGAAATG s panTro1.chr19_random 41889054 49 + 57627672 AT----CTGAAAGTTG---TGCTACTTG--GTTTATTTTTAATAGAATTTAGGAAATG s mm5.chr11 24735233 52 - 121648857 AT-----GGAAAGTTGCTTTGATACTTTC-ATTTCATTTTACTAGAATTTTGGATATG s rn3.chr10 24753362 53 - 110733352 AT-----GGAAAGTTGTTTTGATACTTTCATTTCACTTTTACTAGAATTTTGAATATG s canFam1.chr9 16600753 53 + 53642819 GA----CTGAAATTTGTTGTG-TACTTCGGTTTTATTTTTAATAGAATTTTGAAACTA s galGal2.chrUn 27911583 38 - 165033910 ATAGCTCGGAAGG----------ACTGG--GTTTGATGTTAA--------AGGAAACT s danRer1.chr11 6193648 47 + 27258617 AT----CTGAGCCTAG---AGCTGCATG----ATAAATTAAATAAAATTAAGATGATG a score=8245.0 s hg17.chr17_random 688582 9 + 2618010 CCAACCTTG s panTro1.chr19_random 41889103 9 + 57627672 CCAGCCTTG s mm5.chr11 24735285 9 - 121648857 CCATCCTTG s rn3.chr10 24753415 9 - 110733352 CCATCCTTG s canFam1.chr9 16600806 9 + 53642819 CCAACCTTG s galGal2.chrUn 27911621 9 - 165033910 TCACTCGTG a score=4124.0 s hg17.chr17_random 688591 15 + 2618010 GTG---TTTCGTTATTTT s panTro1.chr19_random 41889112 15 + 57627672 GTG---TTTCGTTATTTT s mm5.chr11 24735294 15 - 121648857 TTG---CATTAACATTTT s rn3.chr10 24753424 15 - 110733352 ATG---CATTAGCATTGT s canFam1.chr9 16600815 18 + 53642819 GTGTTACATTAATATTTT a score=91.0 s hg17.chr17_random 688606 1 + 2618010 A s canFam1.chr9 16600833 1 + 53642819 A a score=-137.0 s hg17.chr17_random 688606 1 + 2618010 A s panTro1.chr19_random 41889127 1 + 57627672 A s mm5.chr11 24735309 1 - 121648857 C a score=16184.0 s hg17.chr17_random 688607 114 + 2618010 CAAAATAATAATTAAGAGAATATAAGAGT---------------------------------------------------------------------------------------------GGAATTT----------------------------------------CTCTAGGG--------------------------------------AATGGGTTG----GAAAATATGTAGTTATATTTTTCATATCAAGTTATAAATGGATTAAAGTTTGGCCATTGTA s panTro1.chr19_random 41889128 111 + 57627672 CAAAATAAT---TAAGAGAATGTAAGAGT---------------------------------------------------------------------------------------------GGAATTT----------------------------------------CTCTAGGG--------------------------------------AATGGGTTG----GAAAATATGTAGTTATATTTTTCATATCAAGTTATAAATGGATTAAAGTTTGGCCATTGTA s mm5.chr11 24735310 211 - 121648857 TAAGATAATGATCCAGAAAATACAAAAGTCAGGGCCAAGGGTCATGG--------------------------------------------------------------------------GAGAGTTTGTGTGTAACAGTGCATGAAGTCGTGAGTTCAAACCTCTCCCTCTGGAGTAAAGAGAGAGAGAATATAAAAACAGGATTTGTTTTTCTATGGACTACCATGAAAATATATAAT--TATTATTCATACCAACTTATAAATGGGCTAGAGTTAGGTCAGCG-- s rn3.chr10 24753621 204 - 110733352 CCAGATAATGATCCAGAAAACACAAACGT--GGGGTGAAGGTAGTGGTTTGTATTTAACAGTGCATGACGTTGTGAGTTCAAACCTTTTGCTCTGGAGAAAAGAGAAAGAGAGAATATAAAAACAATTTGTTT------------------------------------TTC-------------------------------------------TATGGAATACTATGAAATTATATAGT--TATTGATCATACCAGCTTATACATGGGCTACAGTTAGGTCAGTG-- s canFam1.chr9 16600834 116 + 53642819 CAAGATGATGATTAAG-GAATATTAGCGT---------------------------------------------------------------------------------------------GGAATTTATTT------------------------------------GTCCACAG--------------------------------------AGTGGGTGG----GAAAAGATGTAAT-ATATTTTTCATACTGAGTTATAAGTGGATTAAAATTTGGTCAATATC a score=52553.0 s hg17.chr17_random 688721 141 + 2618010 TTCAAAGTTTG----GAGCTAAGGCAGTCTTCGGAGGTA---GGGCTCCCTGGGATTCA---------TTTCTAGTAA---------------------TTTAAGATACA-TTGGCTTGCAACAGGATTCCTTTGTGGGTTTCAATATGAATTATAATAACATATTTATTAGATGGTTA s panTro1.chr19_random 41889239 141 + 57627672 TTCAAAGTTTG----GAGCTAAGGCAGTCTTCGGAGGTA---GGGCTCCCCAGGATTCA---------TTTCTAGTAA---------------------TTTAAGATACA-TTGGCTTGCAACAGGATTCCTTTGTGGGTTTCAATATGAATTATAATAACATATTTATTAGATGGTTA s mm5.chr11 24735521 147 - 121648857 -ACAACATTTGTAGCGAGCGAACACAGTCTTCAGAGGAAGCCGGGTTCCCTGGGATCCG---------TTTCTAGAAG---------------------CTTCAGGTGGT-TTAGCCTAAAGCAGCTCTCCTTTGTGGGTTTCTGTGTGACTTATAATACAATATTCATAGGGTGATTT s rn3.chr10 24753825 137 - 110733352 -ACAACATTTG----TTAC--AATTAGTCTTCAAAGGAAGTAGAGTTCCCTGGGATCAG---------TTTCTAGAAG---------------------CTTAAGATAGT-TTGGCCTAAAGCAGGTTTCCTTTGTGGATTTCTATGTGGCTTACAATAAAGTATTCATAGGATG---- s canFam1.chr9 16600950 132 + 53642819 AGCAA----------AAGCCAAAG--ACTTTTGGAGGTA---GGGTTCCCCAGGGTCGA---------TTTCTAGTAA---------------------TTTGAGATGCT-TTGGCTTGCAACAGGAATCC-TTGTGGATTTCTATATGAATTACAATAATATATTTATCAGATGGTTC s galGal2.chrUn 27911757 166 - 165033910 TCCAAGGCTT-----TGGGGATGGGAGCCTTCCAAGGCA---TTGTGCTCTGGAAGCTGGGAATGAGTCTTCTGGAGGAAAGCTGGTGTGTGCTGCTCTCATAGGCTGGTCTTGGCCATCAGGAAGCTTTTCCTTTTACCAACTGTTTCAAGT-TAACAAAATATTTACCAGGTT---- a score=2263.0 s hg17.chr17_random 688862 5 + 2618010 TTTTG s panTro1.chr19_random 41889380 5 + 57627672 TTTTG s mm5.chr11 24735668 5 - 121648857 TGTTT s rn3.chr10 24753962 3 - 110733352 --TTT s canFam1.chr9 16601082 5 + 53642819 TTTTG s galGal2.chrUn 27911923 3 - 165033910 --TCT s fr1.chrUn 199215113 5 - 349519338 TTCTG a score=244037.0 s hg17.chr17_random 688867 154 + 2618010 TTTATACTTTTATAGGTTGCTGCTAAAACCTTGCCTTTTTATAAGGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCAGACTTTGCAGCTGGTAAAGTAAATTTCATTTTATTGCTGAA---TTGTAATAACTTTT s panTro1.chr19_random 41889385 154 + 57627672 TTTATACTTTTATAGGTTGCTGCTAAAACCTTGCCTTTTTATAAGGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCAGACTTTGCAGCTGGTAAAGTAAATTTCATTTTATTGCTGAA---TTGTAATAACTTTT s mm5.chr11 24735673 153 - 121648857 TTTGTACTTTT-TAGGTTGCTGCTAAGACCTTGCCTTTTTATAAAGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCTGACTTTGCAGCTGGTAAAGTAAATTTCATTTTACTGCTGAA---TTGTATGACTTTAT s rn3.chr10 24753965 153 - 110733352 TTTGTACTTTA-TAGGTTGCTGCTAAAACCTTGCCTTTTTATAAAGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCTGACTTTGCAGCTGGTAAAGTAAATTTCATTTTATTGCTGAA---TTGTATGACTTTAT s canFam1.chr9 16601087 152 + 53642819 TTTATACTTTTGTAGGTTGCTGCTAAAACCCTGCCTTTTTATAAGGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCAGACTTTGCAGCTGGTAAAGTAAATTTCATTTTATTGCTGAA---TTGTAATAACT--T s galGal2.chrUn 27911926 152 - 165033910 CCTCTTCTCTTACAGGTTGCTGCTAAAACTCTGCCTTTTTATAAGGACTACTTCAATGTTCCTTACCCTCTTCCTAAAATTGATCTCATAGCTATTGCAGATTTTGCTGCTGGTAAAGTAA--CTCACTTTATTGATGAA---CTGTATTTTATTTG s fr1.chrUn 199215118 142 - 349519338 TTTTCATTTTGTAAGGTTGC-ACTAAGACATTACCATTCTACAAAGAATACTTCAGTGTTCCCTATCCTTTGCCTAAGATTGATCTCATAGCGATTGCTGATTTTGCTGCTGGTGAGTCATGCTTAGCTTTGAT--TGCA---CTGTT--------- s danRer1.chr11 6195922 147 + 27258617 TTTATTTTCTTTCAGGTTGCCACAAAGACCCTTCCGTTCTACAAAGATTATTTCAGTGTTCCTTATCCGTTGCCTAAAATTGATCTAATTGCTATTGCTGATTTTGCTGCTGGTTGG-----TGTCATTTTCTT--TAAACATCTCTCAGAATT--- a score=11232.0 s hg17.chr17_random 689021 22 + 2618010 TAAAA------TTTTGTGACTTTTGATG s panTro1.chr19_random 41889539 22 + 57627672 TAAAA------TTTTGTGACTTTTGATG s mm5.chr11 24735826 22 - 121648857 TTGAA------TTTTGTGATTTTTGAGG s rn3.chr10 24754118 22 - 110733352 TTGAA------TTTTGTAATTTTTGAGG s canFam1.chr9 16601239 21 + 53642819 TTGAA------TTTTGTGA-TTTTGAGG s fr1.chrUn 199215260 27 - 349519338 TGAGATGCTGTTTCTGTAAATGTTAAG- s danRer1.chr11 6196069 22 + 27258617 TAAAA------CATTGTCTGTTATGCTT a score=2139.0 s hg17.chr17_random 689043 5 + 2618010 CAAGA s panTro1.chr19_random 41889561 5 + 57627672 CAAGA s mm5.chr11 24735848 4 - 121648857 -AAAA s rn3.chr10 24754140 4 - 110733352 -AAAA s canFam1.chr9 16601260 5 + 53642819 AAGGA a score=0.0 s hg17.chr17_random 689048 43 + 2618010 GtatatatatatatatatatatatatatatatatatatatCTC a score=3345.0 s hg17.chr17_random 689048 40 + 2618010 Gtatatatatatatatatatatatatatatatatatatat s panTro1.chr19_random 41889566 24 + 57627672 Gtatatatatatatatatatatat---------------- s mm5.chr11 24735852 15 - 121648857 GTATGCATATATATA------------------------- s rn3.chr10 24754144 13 - 110733352 GTATGCATATATA--------------------------- s canFam1.chr9 16601265 13 + 53642819 ATATGTACATATA--------------------------- a score=2467.0 s hg17.chr17_random 689088 3 + 2618010 CTC s panTro1.chr19_random 41889590 3 + 57627672 CTC s mm5.chr11 24735867 2 - 121648857 -TC s rn3.chr10 24754157 2 - 110733352 -TC s canFam1.chr9 16601278 2 + 53642819 -TC s galGal2.chrUn 27912112 3 - 165033910 ATC a score=24211.0 s hg17.chr17_random 689091 23 + 2618010 AATAAATGTTTATATTTATTTTG s panTro1.chr19_random 41889593 23 + 57627672 AATAAATGTTTATGTTTATTTTG s mm5.chr11 24735869 23 - 121648857 AATAAATGTTTATATTTATTTTA s rn3.chr10 24754159 21 - 110733352 AATAAATGTTTA--TTTATTTTA s canFam1.chr9 16601280 23 + 53642819 AATAAATGTTTATATTTATTTTA s galGal2.chrUn 27912115 23 - 165033910 AATAAACCTTTGTATTTATTTTA s fr1.chrUn 199215287 21 - 349519338 AATAACATTTTACTCCCATTC-- a score=102090.0 s hg17.chr17_random 689114 46 + 2618010 TGAAGGTG-CCATGGAGAACTGGGACCTTGTTACTTATAGGTATGTT s panTro1.chr19_random 41889616 47 + 57627672 TGAAGGTGGCCATGGAGAACTGGGACCTTGTTACTTATAGATATGTT s mm5.chr11 24735892 46 - 121648857 TGAAGGTG-CCATGGAGAACTGGGGCCTTGTTACTTATAGGTATGTT s rn3.chr10 24754180 46 - 110733352 TGAAGGTG-CCATGGAGAACTGGGGCCTTGTTACTTATAGGTATGTT s canFam1.chr9 16601303 46 + 53642819 TAAAGGTG-CCATGGAGAACTGGGGCCTTGTTACATATAGGTATGTT s galGal2.chrUn 27912138 46 - 165033910 TAAAGGTG-CCATGGAGAACTGGGGCCTTGTTACTTATAGGTATGCT s fr1.chrUn 199215308 43 - 349519338 ---AGGTG-CCATGGAAAACTGGGGCCTTGTTACATACAGGTAGGCT s danRer1.chr11 6196122 46 + 27258617 TGTAGGTG-CCATGGAAAACTGGGGCCTTGTTACTTACAGGTAAGTT a score=203046.0 s hg17.chr17_random 689160 569 + 2618010 -----AATGATGT---ATTACCCTGCCTTATCTTTTCA------------AATCACTGATTTCAA--------AAGGGCTTCCCTCCTAATCA---CAGTTGAGTAGCTTCTGCTTTACGATATGGTGTAAATTTTTCTACCTTCCCC---------CACTTCCATGCACATTTCAAGAATGCAG--ATGGACACCTCTCCCTTTGGTGCTACTGTCTGAGGGTGTAAGA-TTTTAAAGTGAGCATCTGGCGGTAGTAGCATTTTTAGATATATTCTTGGCTAAGTTTCTCATTGCAGTGCCTTTCTTTCCTGCCAGTAGTTTCACAGCTATTTATCCAGCTTGGAGAACCTTCCCTAATTTCATATCTTCTAGCCAAGTTTTTACATGTCTGTCACCACAACATAAACATGTGAGTTGAATAACTTTTAAAAGCAGAGTCTGTCTGTAAACAAGTTTTTGCCTTCTACT--------TTCAATTGCCTTCTTAGATGAGCTAAGTGTTGAACGGCCGGCTCAGTGCTGTTTTTGGGACTATGGAATGCATCT-TCCTCCACCACT--------CCCCTCATTTAA--TGAAAGGACTTTCTTCTC-TCTCCATCTAGCACAGTAATCGCTA s panTro1.chr19_random 41889663 569 + 57627672 -----AATGATGT---ATTACCCTGCCTTATCTTTTCA------------AATCACTGATTTCAA--------AAGGGCTTCCCTCCTAATCA---CAGTTGAGTAGCTTCTGCTTTACGATATGGTGTAAATTTTTCTACCTTCCCC---------CACTTCCACGCACATTTCAAGAATGCAG--ATGGACACCTCTCCCTTTGGTGCTACTGTCTGAGGGTGTAAGA-TTTTAAAGTGAGCATCTGGCGGTAGTAGCATTTTTAGATATATTCTTGGCTAAGTTTCTCATTGCAGTGCCTTTCTTTCCTGCCAGTAGTTTCATAGCTATTTATCCAGCTTGGAGAACCTTCCCTAATTTCATATCTTCTAGCCAAGTGTTTACATGTCTGTCACCACAACATAAACATGTGAGTTGAATAACTTTTAAAAGCAGAGTCTGTCTGTAAACAAGTTTTTGCCTTCTACT--------TTCAATTGCCTTCTTAGATGAGCTAAGTGTTGGACAGCCGGCTCAGTGCTGTTTTTGGGACTATGGAATGCATCT-TCCTCCACCACT--------CCCCTCATTTAA--TGGAAGGACTTTCTTCTC-TCTCCATCTAGCACAGTAATCGCTA s mm5.chr11 24735938 502 - 121648857 -----AATGACAC---GTTACCCTGCCTT---CTTTCA------------AATCACCGATCTCAT--------AAGGGCTTCACT-CTGTTCA---CAGTTGAGTGGCTTTTGCTTTATGCTCTGG-GAAAATTTTTCTGCCTCTCCT---------GAGTTTCATGAATATTTGAAGCATGCAG--ATGGATTTCCCTCAC--TGGCGCTA---TCTGAGGGTACAATATTTTTAAAGGGTGCATTTGGCACTTGTCGC-TTTTTAGCTGTGTTCTTGGCTGAGTCAC---GTCCAGTGCTGTT--------TCACGAGTGACATAGCTA-TTGCCCGATGTGACGAGCCT---CCGGTTCTGTATTTTGTAGGCAGAGTTTTACATGGCTGTCAGCACAGTACAAACATGTGGGTTGCATAAGTTCT-GAAGCTGA----GTCTGTAAACAATTTTTT--CTTCCACT--------TTCAGTTGTCT--TTGGATGAGCTGAGCTCTGTAGAGCCTGCTCAGTGTCCTCTTTGGGACTTTACACTG--TCT-TCTGCTGCTACT------------------------------TTTTCGTGTCTTCTCTGATTAGCA------------ s rn3.chr10 24754226 496 - 110733352 -----AATGACAC---ATTACCCTGCCTT---CTTTCA------------AATCACTGATTTCAT--------AAGGGCTTCACT-CTATTCA---CAGTTGAGCGGCTTTTGCTTTATG------------CTTTTCTGCCTCTCCT---------GAGTTCCATGACTATTTGAAGCATGC-G--ATGGAC-TCCCTCGC--TGGTGCTACTGTCTGAGGGCACAGTATTTTTAAAGGGAGCATTTAGCACTTGTAGCATTTTTAGTTGTGTTCCTGGCTTGT-------GTGTAGTGTGATTTCTTC---CCAAGAGTTACATAGCTA-TTGCCCAACATGAGGAGCCT-CCCCGATTCTGTATTTTCTAGGCAGATTTTTACATGGCTGTCAGCACAGTACAAACATGTGGGTTGCATAAGTTCT-CAAGCTGAGTCTGTCTGTAAACAATTTCTC--CTTCCACT--------TTCAGTTGCC---TTGGATGAGCTCAGATCTGTAGAGCCTGCTCAGTGTC-CCTTTGGGACC-TGAGGTG--ACT-TCTGCTGCCGCT------------------------------TTTTCCTGTC--TTCTGATTAGCAG----------- s canFam1.chr9 16601349 553 + 53642819 -----AATGATACATTATTACCCTGCCTTATCTTTTC-------------AATCACTGATTTCAT--------AAGAGCTTCACTCCTAATCA---CAGTTGAGTAACTTCTGCTTTGTGATCTGCTGTAAATTTTCCTACCTCCCCC----------ACTTCTGTGCACATTTCAGGAATGCAG--ATGAAC-ACCCTC----TGGTGCTACTATCTGAGATTGTGAGA-TTTTAAAGTGAGCATCTGGCATTAGTA-CATTTTTAAATCTATTTTTGGCCAAGTTTCTCATTTCAGTGCCTTCTCTTCCTCCCAGAAGTTTCATAGTTATTTTTCCAGCTTGAAGAACTGACTCTGCTTTAATATTTTCTAGCCAAGTTTTTACATATCTGTCACCACAATACAAACATGTGGGTTGTATAATTTTT-AAAGCAGG----GTCTGTAAACAAGTTTTTGCC--------------------CCGCC---TTTGATGAGTTACATTTTGGACAGCCTGCTCAGTGTTCTTTTTGGGACTATGGAATGTATCTGCCCCCCACCACTTGCCACTCCCCTTCTTTTAA--TGGAAGGACTGTCTGCTC-TCTCTGTCTAGCACAATAATCCCTA s galGal2.chrUn 27912184 525 - 165033910 GTTAAAATACTGT---CTTTCCCCTCCTT---TGTTCACTAATTCTTAGCAGTAACTGGATTAGTTTTAGGGAACTGGCATCATCCCAAATAAGACCAAATCAATACCTTCAGCTCT-TGCTTCACTTTGAACCGTTGTGACTTCTGCAGCAGCGTGCATTATTACACAAACCTTAGGAAGGCAGGAATGAGC-----TC----TGTAGGCACTGTCCAAGGGTGTGAGGGTTTTTAACTG----CCTGGCAGCACTGCC---------TGTTCTCCAAGAGAACTTTC---TTG----GCTGTTTTTTCCCCATCCAGGTTACGCGCTTACTGGCACAGCTGGAAGGGTTT---CTTGTTT--TATGTTGTAGGCAAGTTGGTCAATGTA-GCAGCCACATGATTATCATGTAAAT--GAGGAATACT--AACTTGCCTTCCTTTG----CAGTTTTTTGTGTTCATCTGATCAAGCTTTTACACCTTTGCTTGATACTC-----------CTGCATGATCTGTGCACATTGTTAGACTGA------------TTCTCCTTCATT--------TTGTACATTGGACTTGGAAG--CTTTGGACTT------------------------CA a score=-10218.0 s hg17.chr17_random 689729 82 + 2618010 ATCCCTTAGACAAT-----GTTTTCCCAAAATTTCAGGCAGCTATTCTA----TCAACAAACTGATAATTAAACTTGTGT---------CACATCTTTGA s panTro1.chr19_random 41890232 82 + 57627672 ATCCCTTAGATAAT-----GTTTTCCCAAAATTTCAGGCAGCTATTCTA----TCAACAAACTGATAATTAAACTTGTGT---------CACATCTTTGA s mm5.chr11 24736440 48 - 121648857 -------------------GTCTTCCT-AGTCACCAGGCAG----------------CACACTAA----TAAACTTGGCT------------ATCTTTGA s rn3.chr10 24754722 30 - 110733352 -----------------------TCCT-AGTCGCCAGACAG----------------CGCACTGA----CAAGC-------------------------- s canFam1.chr9 16601902 82 + 53642819 ATCCCTTAGACAAA-----GTTTTTAAAAACTTTCAGGCAGCTGTCCTA----TTTACAAACTGATGATTAAACTTCTAT---------CACACCTTTGA s galGal2.chrUn 27912709 75 - 165033910 ATCCTTTTGAATTT-----CTTTTGCTAAACTTTGA-------ATTTTG----GCCTTAAAAGAAAAAAAGAATTTGCAA---------TGGATGTTTGA s danRer1.chr11 6196392 100 + 27258617 ATCTTTTAGATTTTCACTGATTTTGCCTTGTTTAACCCAAGCCATTttagatgtctattagatgtctattagaCTTATTTTAAACACAACATATGCTTGC a score=13198.0 s hg17.chr17_random 689811 34 + 2618010 --TATTCTGTTGTATTAATTCTGTTGGGGTAGTCTT s panTro1.chr19_random 41890314 34 + 57627672 --TATTCTGTTGTATTAATTCTGTTGGGGTAGTCTT s mm5.chr11 24736488 34 - 121648857 --TTTTCTGTTGTACATAGTCTATCAAAGTAGTCTT s rn3.chr10 24754752 31 - 110733352 -----TCTGCTGTCCTTAGCCTGTCACAGTAGGCGT s canFam1.chr9 16601984 34 + 53642819 --TCTTCTCTTGTATGAATTCTGTTGGAACAGTCTT s danRer1.chr11 6196492 36 + 27258617 TGGGTTGTGTTTTTTTATTTTTGCAAGCATGCTGTT a score=2661.0 s hg17.chr17_random 689845 26 + 2618010 ----TAATCTTCGTGAAACTTTTTC-TTTCC-- s panTro1.chr19_random 41890348 25 + 57627672 ----TAATCTTCGTGAAACTTTTTC--TTCC-- s mm5.chr11 24736522 26 - 121648857 ----TAGACTTCCTGAACCCTATTT-ATCTT-- s rn3.chr10 24754783 26 - 110733352 ----CAGACTGCTGACCGTCTGTCT-GTCTT-- s canFam1.chr9 16602018 27 + 53642819 ----TAATCTTTCTGGAACTTTTTCTATTCT-- s galGal2.chrUn 27912812 26 - 165033910 ----CAATTTTTATGAAATCTTTTA-CTTCC-- s danRer1.chr11 6196528 30 + 27258617 CAGGAGAGCTTCATTAA--TTTTTC-ATCCTTC a score=-2594.0 s hg17.chr17_random 689871 13 + 2618010 --------ATATT-----AGGAAATA s panTro1.chr19_random 41890373 13 + 57627672 --------ATATT-----AGGAAGTA s mm5.chr11 24736548 18 - 121648857 --------ACATTTCCTGAGAAAATG s rn3.chr10 24754809 17 - 110733352 --------ACCCTTGCT-GAGAAGTG s canFam1.chr9 16602045 18 + 53642819 --------GTGTACTCTGAGGAAATG s danRer1.chr11 6196558 13 + 27258617 TTGGTAGCATGTT------------- a score=9072.0 s hg17.chr17_random 689884 102 + 2618010 TTTTCCTAATATCTCTAAAGCCTAACTT--GTCCAT--------CTGACTTACTGTCTGAATCTT----CCCAACTTATGCATGCCCACTTTTATTG----------------TTTAAATTTGT------TTCTTTTT s panTro1.chr19_random 41890386 102 + 57627672 TTTTCCTAATATCTCTAAAGCCTAACTT--GTCCAT--------CTGACTTACTGTCTGAATCTT----CCCAACTTATGCATGCCCACTTTTATTG----------------TTTAAATTTGT------TTCTTTTT s mm5.chr11 24736566 107 - 121648857 TTTACTTGATATTGCTAAAGCCTAATATAAAGCCAG--------TTGACTTACTGCCTGAACCTC----CTTCTCTTCTCTATGCCTGCTTTTATTG-------------------AAATGCTTTTACCATTTTATTT s rn3.chr10 24754826 100 - 110733352 TTTACTCGGCATTGCTGAAGCC--ACTGTAGAGCAG--------TTGA-TCATTGCCTGCATGCC----CCGCACTTCTTCATG----CTTTTATTG-------------------AAACACTTTTACCATTTTATTT s canFam1.chr9 16602063 136 + 53642819 TTTTCTTGACATTTCTAAAGCCTAACTT--GACCATTTACTTGACTAATTTACTGTTTGAATCTCCCTTCCCCATTTGTGCATGCCTGCTTTTATTGAAATACTTAACATTACTTAAAAAGTTTTTTTTTTGTTTTTG s galGal2.chrUn 27913459 84 - 165033910 TTGTACCGATCACTCTGTAGCTTGTTTA--GGTTAT--------TTAACCTACT-------TTTG----CTGTGTTTTTTAACGTAGGCTTGTTTCA---------------------------------CTCTGTTC s danRer1.chr11 6196571 89 + 27258617 AATCCCCAGCATACCTTAACAGTA--TG--AGCCAC--------ATTA--TGCTCCCTG----TT----CTGTAGTCATGCAT-----TTTTTATTC--------------------GCTGCTTTTATCATTTTGC-- a score=285664.0 s hg17.chr17_random 689986 237 + 2618010 TTTT-------TTTTTTAAACATAGGGAGACTGCATTGCTTATTGATCCAAAAAATTCCTGTTCTTCATCCCGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTTGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATTTATCTTCATC--CTACTCCACATTATTTTG--GCTA-----CATAG-TATTTCAAGTT--------TGGCTGCAACACTGTGCCAAAAAA s panTro1.chr19_random 41890488 237 + 57627672 TTTT-------TTTTTTAAACATAGGGAGACTGCATTGCTTATTGATGCAAAAAATTCCTGTTCTTCATCCCGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTCGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATTTATCTTCATC--CTACTCCACATTATTTTG--GCTA-----CATAG-TATTTCAAGTT--------TGGCTGCAACACTGTGCCAAAAAA s mm5.chr11 24736673 235 - 121648857 ATTT-------CTTTTTAAACACAGGGAAACGGCCTTGCTTATTGATCCAAAAAACTCGTGTTCTTCATCACGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTCGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATCCATCTATGTC--CTGCTGCACATTATTTTG--GCCA-----CAC---TCTTTCAAATT--------TGGCTATGATACTATGCCGAAAAT s rn3.chr10 24754926 233 - 110733352 ATT---------CTTTTAAAAACAGGGAGACGGCATTGCTTATTGATCCAAAAAACTCGTGTTCTTCATCACGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTCGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATCCATCTGTGTC--CTGCTGCACACTATTTTG--GCCA-----CAC---TCTTTCAAATT--------TGGCTATGATGCTAGGCCAAAAAT s canFam1.chr9 16602199 237 + 53642819 TTTT-------TTTTTTAAACACAGGGAGACTGCATTGCTTATTGACCCAAAAAACTCCTGTTCTTCATCACGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTCGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATTTATCTTCATC--CTGCTGCACATTATTTTG--GCTA-----CATAG-TGTTTCAGGTT--------TGACTGGAACATAGTGCTAAAAAA s galGal2.chrUn 27913543 253 - 165033910 AGTTACCTCTCTCTTTTAAATACAGGGAGACTGCATTGCTCATTGACCCCAAGAATTCCTGTTCTTCATCTCGCCAGTGGGTGGCTCTGGTTGTGGGACATGAACTTGCTCATCAGTGGTTTGGAAACCTCGTGACCATGGTA----TCTAACAGTGACAAATTCT----TCTAGTTCTTGTTGACGTGTGCTTCATATCATTATT--ATTAAGTGTCAT---TATTAGAAGTGTCCTGTAATAACAGACACGCTGTCTTAAAAAT s fr1.chrUn 199215731 201 - 349519338 TTTA-------CCTTTTGTTCACAGAGAGACGGCGCTGCTAATCGACCCAAAGAACTCCTGCTCGTCTTCTAGGCAGTGGGTGGCACTGGTGGTGGGACACGAACTCGCCCACCAGTGGTTTGGAAACTTAGTCACTATGGTAACCTGTTAATAATTTGAA---------------------TGCC--------------AGTTTG--ATAA-----TATGGACATTTTTGTTT---------------AATGTGAGATTAATAA- s danRer1.chr11 6196660 227 + 27258617 ---------ATTTGTTCTCTCATAGAGAGACAGCGCTGCTGATTGACCCAAAGAATTCGTGTGCATCGTCCCGCCAATGGGTCGCTCTTGTAGTCGGTCATGAACTGGCACATCAGTGGTTCGGGAATCTAGTTACCATGGTA-------AGTGCCTTCAGATGTTCAG-------TGTGGTTGGT--GTGCCATATATAGTTTTGTAGCTG-----CATGA-TTAATCAAAAT--------AAATGCTAAAGTCATGATATGGCT a score=-492.0 s hg17.chr17_random 690223 4 + 2618010 TAAT s panTro1.chr19_random 41890725 4 + 57627672 TAAT s mm5.chr11 24736908 4 - 121648857 TAAT s rn3.chr10 24755159 4 - 110733352 TAAA s galGal2.chrUn 27913796 4 - 165033910 TGCC s fr1.chrUn 199215934 2 - 349519338 TG-- s danRer1.chr11 6196887 4 + 27258617 TAGT a score=-2161.0 s hg17.chr17_random 690223 4 + 2618010 ---TAAT s galGal2.chrUn 27913796 4 - 165033910 ---TGCC s fr1.chrUn 199215934 2 - 349519338 ---TG-- s danRer1.chr11 6196887 4 + 27258617 TAGT--- a score=2343.0 s hg17.chr17_random 690227 5 + 2618010 TGAGT s panTro1.chr19_random 41890729 5 + 57627672 TGAGT s rn3.chr10 24755171 5 - 110733352 TATGT s canFam1.chr9 16602436 5 + 53642819 TGAAT s galGal2.chrUn 27913800 5 - 165033910 TTATT s fr1.chrUn 199215936 5 - 349519338 TGTGT s danRer1.chr11 6196892 5 + 27258617 CAAAT a score=-781.0 s hg17.chr17_random 690232 5 + 2618010 GATAG--- s fr1.chrUn 199215941 5 - 349519338 GAAAG--- s danRer1.chr11 6196897 5 + 27258617 ---AACTA a score=1001.0 s hg17.chr17_random 690232 3 + 2618010 GAT s panTro1.chr19_random 41890734 3 + 57627672 GAT s rn3.chr10 24755176 3 - 110733352 GCT s canFam1.chr9 16602441 3 + 53642819 GAT s fr1.chrUn 199215941 3 - 349519338 GAA s danRer1.chr11 6196897 3 + 27258617 AAC a score=-459.0 s hg17.chr17_random 690235 2 + 2618010 -AG s panTro1.chr19_random 41890737 2 + 57627672 -AG s rn3.chr10 24755326 2 - 110733352 -AA s canFam1.chr9 16602444 2 + 53642819 -AG s fr1.chrUn 199215944 2 - 349519338 -AG s danRer1.chr11 6196900 2 + 27258617 TA- a score=5748.0 s hg17.chr17_random 690237 13 + 2618010 AAAAGTATTATTT s panTro1.chr19_random 41890739 13 + 57627672 AAAAGTATTATTT s rn3.chr10 24755328 13 - 110733352 AAACATTTTCTTT s canFam1.chr9 16602446 13 + 53642819 AAAATCCTTGTTT s galGal2.chrUn 27913805 13 - 165033910 ATCAGTTTCTTCT s fr1.chrUn 199215946 13 - 349519338 AAAACTATAAAAT s danRer1.chr11 6196902 13 + 27258617 AAAAGTATGACTT a score=-8337.0 s hg17.chr17_random 690250 70 + 2618010 TAAAAGGTCCACTTTG-AAAGGGCTTAT---CAGAATCTCTGC----------------------------------------------------------------ATTGAACAAGGGCA-------------TATG-------------GACAGTCTTTATT s panTro1.chr19_random 41890752 70 + 57627672 TAAAAGGTCCACTTTG-AAAGGGCTTAT---CAGAATCTCTGC----------------------------------------------------------------ATTGAACAAGGGCA-------------TATG-------------GACAGTCTTTATT s rn3.chr10 24755341 160 - 110733352 TAAAAGGTCTGCTTTGCAAAGCATTTAT---CAGGG-CTTTGCGGATACCTCAATGGTTAGATACTTGCCCAGTTTCAGGTCCTTAGATTCCCAGGTACCTAGAGGAATTAAGGGAAGGGAGAAGAGAGATATTTATGAGAACAGAGATGAGACCGTAGTTATT s canFam1.chr9 16602459 67 + 53642819 TAGAAAGTCCACTTTGAACAGTATTTAT---CAGAA--TCTGT----------------------------------------------------------------GTCAGTCAAGAGCA-------------TGTG-------------GACAGTC--CATT s galGal2.chrUn 27913818 69 - 165033910 TTATTAGTGTGTCCTGTAAAGGTATCTG---TAGAT-CTTTTC-----------------------------------------------------------------TAAGACAGGAGAA-------------GACC-------------GAGTATGCTCATT s fr1.chrUn 199215959 69 - 349519338 TATAATGCTGAATTGGTAGAAACAATATGGATAGGA--TTTAT-----------------------------------------------------------------ATGATCGAGGGGA---------------TG-------------GTTTCTTATTACT a score=14947.0 s hg17.chr17_random 690320 61 + 2618010 CAACAG------ACACTTCCTAAACTGTTCTAAAATTTGTCTGCAAATGGGAAAAGTCAAGATACTA s panTro1.chr19_random 41890822 61 + 57627672 CAACAG------ACACTTCCTAAACTGTTCTAAAATTTGTCTGCAAATGGGAAAAGTCAAGATACTA s rn3.chr10 24755501 58 - 110733352 TAACAG---GAAATGTTTTGTAA------CTACAATTCATTTGCAAATAGGAAATGTTAAGGTACTA s canFam1.chr9 16602526 63 + 53642819 CAACAC---AAAATACTTCCTAAATTGTTGTAGAATTTGCCCGCAAATGGGGAA-GTCTTGATACTA s fr1.chrUn 199216028 63 - 349519338 CAATTCACTAAATTTCTTTTTAAATTGGTCC----CTTGTCTTCATTCATTTTGAATAGAGATACTG a score=24550.0 s hg17.chr17_random 690381 144 + 2618010 ATTTGGGTGAGAGGAAAAGATT-CCTCTTAGGTGTAGATGAATGAATCATGCAGTGAGATTCCAGGCTAACTGTAGTTTCTTGAATCTTATTTGTTAATCTGACTCACAGCTGAAAAGTAACCTGATGAATAACAGACTGATCTT s panTro1.chr19_random 41890883 145 + 57627672 ATTTGGGTGAGAGAAAAACATTCCCTCTTAGGTGTAGATGAATGAATCATGCAGTGAGATTCCAGGCTAACTGTAGTTTCTTGAATCTTATTTGTTAATCTGATTCACAGCTGAAAAGTAACCTGATGAATAACAAACTGATCTT s rn3.chr10 24755559 108 - 110733352 ATTTGGGTGAGAGAAAAA-ATT-TGTCATAGTAAAAAAGGATTGAACTCCGCAGTGAGATTCCAGGCTAGC--TAGT---TTAAGTTATCTTTG-----------CATAGTTTA-------------------CAAATTGAACTG s canFam1.chr9 16602589 114 + 53642819 ATTTGGGTGAGAGAG----ATT-------AGGTATA-------------------GAGATTTCAGGCTAACTATAGTTTCTTGAG-CATATTTATTATGTAGTTCAGTCGCTAAAAAGAAACCTGATAAATAACAATGTGGTCTT a score=207538.0 s hg17.chr17_random 690525 519 + 2618010 TAATTAGAGAGAAATGTTTTTAGGAGTCAGTTTTTTCATTGCCTAAAATGTTAAGTTGAAATTTAAT-GAAATAAAAGT---AAACAAACTGCAGAGTGACTGCAGAATAAAGCTGTATTAAAA-TTCCAGCTGTTCTGTTGAAATCCTTA-------TAATGTTTGCAG-TAATGATCTCTGTCCTTCAGTCCTGA----TTTTTCACTCTTACTCTAAGT-AAATACTATTTATGAATGCCAACTGTGTTAGAGCTTGGGAGCACAGGATTTAATAAGTGAACTAGATGTACCTCTGCAATTAAATAACTGGATATTCTGGAGCCAGCTAGATTCCCTGA---CATTTTAGGCTGCCAAAGAGCAGAACCTGATTTGAATGTAGATTGAGTCCATAC--GTTATATAAATAAG----AATGTAAGACATTTATCAACTGTTACGTGTCTCAGAGAGTTTCTACAGAAAGTCAACCCTTGAAAATAAATCTTTTCCTTTTATTTTGGATGTTTAAAA----TTTTACAGGTG-AAAAAAATTCTTTGAAA s panTro1.chr19_random 41891028 524 + 57627672 TAATTAGAGAGAAATGTCTTTAGGAGTCAGTTTTTTCATTGCCTAAAATGTTAAGTTGAAATTTAAT-GAAATAAAAGT---AAACAAACTGCAGAGTGACTGCAGAATAAAGCTGTATTAAAA-TTCCAGCTGTTCTGTTGAAATCCTTA-------TAATGTTTGCAGATAATGATCTCTGCCCTTCAGTCCTGA----TTTTTCACTCTTACTCTAAGT-AAATACTATTTATGAATGCCAACTGTGTTAGAGCTTGGGAGCACAGGATTTAATAAGGGAACTAGATGTACCTCTGCAATTAAATAACTGGATATTCTGGAGCCAGCTAGATTCCCTGA---CATTTTAGGCTGCCAAAGAGCAGAACCTGATTTGAATGTAGATTGAGTCCATACTAGTCATATAAATAAG---AAATGTAAGACATTTATCAACTATTACGTGTCTCAGAGAGTTTCTACAGAAAGTCAACCCTTGAAAATAAATCTTTTCCTTTTATTTTGGATGTTTAAAA----TTTTACAGGTGAAAAAAAATTCTTTGAAA s mm5.chr11 24737233 500 - 121648857 TAAACACAAAAACGTGGTTATGTAAGTCATTAGTGTATTTGCCTAAAA---TAAGGTGAAGTT---T-GAAGTAAAATTTTAAAAAAATCT---------------------GTTGAACTAAAA-ATCTAACTATCTAATTGGAGTTTTCAGT-----TACTGTATGTAT-------TTTCTATCTGTTAATGCTGG----TGTTTCACCTTTACTATAAATAAAATTCTATCTGTGGAAGCCAATTATGTTAGTGTTTTGAAATACAGGGTTTAATAAATGAATTAGACTTAACTGTGCCCTGAAAGAACTGGAGA--CTGGACTTAGCCGGATTCCTTGACAGCACCATAGACTGCCAAAGAGTTGAACCTGACTTAGATGTTGGTTAAGTCCATGT--GCCTTAGAAATGAGT-GAAAATTAAGATGTGTTTCAACTATGACCTAGCTAAGAACACTTCTAAAGAAAGTCAGTCTCTGAAAATACCCTCTTATATTTTTCTTCCAATGCTTAAAACTTTTCTTACAGGTT-AGGTGGCTTTTTAAAAA s rn3.chr10 24755669 505 - 110733352 TAAACACAAAAAAGTGGTTATGTGAGTCATTATTGTAGTTGCATAAAA---TAAGGTGAAGTT---T-GAAATAAAATTTTTAAAAAAT-----------CTGTAGAATAAAGTTCTACTAAAA-TTCTAACTATGTAATTGGAGTTTTCA---------GTTACTGTAT-------TTTATATCTGTTAATCCTGA----TGTTTCACCTTTACTGTAAATAAAATTCTATCTGTGGGAGCCAATTATGTTAGTGTTTTGAAATACAGAGTTTAATAAATGAATTAGACTTACCTGTGCCCTGAAAGAACTGGAGA--CTGGACTTGGCCAGATTCCTTGACAGCACCATGGGCTGCCAAAGAAGTGAACCTGACTTAGATATTGGTTAAGTCCATGT--GTACTAGAAATGAGCAAAAATGTGAGGTGTGTTTCAACTATGACCTAGCTAAGAACATTTTTAAAGAAAGTCAGTCTGTTAAAATAAGCTCTTCCACTTTTCTTTGTATGCTTAAAATTTTTCTTATAGATT-AGGTAGCTTTTAAAA-- s canFam1.chr9 16602703 527 + 53642819 TGATTAGCTTGAAATGTTTTTAGGAATCAGT-TTCTCATTGCCTGAAATGTTAAGTTGAAATTTGTTAGAAATGAAAGC---AAAGAAACCAGGAAATAACTGTAA------ACTATATTAAAATTTCCAGCTCTCCCATTGAAATTGTTGTTTATTATAATGGTTGAAT-----GATCTCTGC---TTAAGCCTGGACCTTTTTTCCTTCTTACTCCAAAT-GAGTACTGTTTATGTCGGCTAGCTGTCTTAGAGCTTGGGAGCACAGAGTTTAATGAGTGAACTAGAAATACCTCTGCAAAGAAAGAACTGGGGCTTCTGAAGCCAGCCAAATTCCCTGATAGCATTTTAGGCTGCCAAAGAGCAAAACCTGACTTGGATGTTAGTTGAGTCCATAT--GTCACAGGAATAAGCAAGAAAGTAAGACATTTAGCAACTATTACATGTCTGAGACAGTTTTTAAAGAAA-CCAGCCCTTGAAATTAAACCATTTCTTTTTGCTTTGGATGTTTAAAATTTTACTTAGGTGTG-AAAAAAATGTTTGAAA- a score=1512.0 s hg17.chr17_random 691044 8 + 2618010 TATAATTT s panTro1.chr19_random 41891552 8 + 57627672 TATAATTT s rn3.chr10 24756174 8 - 110733352 AATAACTT a score=27942.0 s hg17.chr17_random 691052 310 + 2618010 CAggccgggcacggtagctcacgccagtaatcccagcactttgggaggccgaggcgggtggatcacttgaggtcacgtgtttgagaccaccctgaccaatgttgcgaaactccatctccactaaaaaaaaaatagaaaattagctgggcgtggtggtgtgcacctgtaatcctagctactctggaggttgaggcagaagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcacgccactgcactccagcctgggcaacaagagcgaaactccatctcaaaaaaaaaaaaaa-----aaagaaa s panTro1.chr19_random 41891560 314 + 57627672 CAggccgggcacggtagctcacgccagtaatcccagcactttgggaggctgaggcgggtggatcacttgaggtcacgtgtttgagaccaccctgaccaatgttgcgaaaccccatctccact-aaaaaaaaatagaaaattagctgggtgtggtggtgtgcgcctgtaatcctagctactctggaggttgaggcagaagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcacgccactgcactccagcctgggcaacaagagcgaaactccatctcaaaaaaaaaaaagaaatataaagaaa a score=1272.0 s hg17.chr17_random 691362 3 + 2618010 TAT s panTro1.chr19_random 41891874 3 + 57627672 TAT s mm5.chr11 24737901 3 - 121648857 TAC s canFam1.chr9 16603230 3 + 53642819 TAT a score=16060.0 s hg17.chr17_random 691365 36 + 2618010 AA-TTTCATGTGGAACTATGT--GTTGGTGCCTGTATTC s panTro1.chr19_random 41891877 37 + 57627672 AATTTTCATGTGGAACTATGT--GTTGGTGCCTGTATTC s mm5.chr11 24737904 37 - 121648857 AA-TATCAT-TGGAACTATATGAGTTAATGCCTGTATTA s rn3.chr10 24756332 38 - 110733352 AA-TTTTCTTTGGAACTATATGACTTAATGCCTGCATTC s canFam1.chr9 16603233 38 + 53642819 AA-TTTCATGTAGAATTAAGTATGCTAAGACCTGTATTC a score=11509.0 s hg17.chr17_random 691401 54 + 2618010 AAATATGTGAAGAAATGGC--CTTTTCTTCTAATGCAGCGAG--TTTGCTACTTTGTA s panTro1.chr19_random 41891914 54 + 57627672 AAATATGTGAAGAAATGGC--CTTTTCTTCTAATGCAGCGAG--TTTGCTACTTTGTA s rn3.chr10 24756370 58 - 110733352 TAATGTGTGTAAAAATTTCTATTTTCCCTCCGGTTTTGGAGGTTTTTGTTGTTTTGTG s canFam1.chr9 16603271 50 + 53642819 AAATATGTACAGAAATATT--CTCTTCTCCTAATGTAGCAAG--TTTGTTGCTA---- a score=4924.0 s hg17.chr17_random 691455 12 + 2618010 CCAAATAATTTT s panTro1.chr19_random 41891968 12 + 57627672 CCAAATAATTTT s rn3.chr10 24756728 12 - 110733352 CCTACCAATTTT s canFam1.chr9 16603321 12 + 53642819 CCAAACAATTTT a score=48219.0 s hg17.chr17_random 691467 221 + 2618010 TTTGCTTGGCTTTGAGATAAC-------TTTATGATTTTATT-----TTGAA---------------ACTACAAGCAATAAATTTTAGTAGGGGAAATGTGTAC--ATTCTTAT------------------------------TAAACAACTTTTTACTGGTTTTATGTAACTATTCTAGTTA-------------------TTAGA------ACTGAAATTCCAAGGGCTTAGGGATAGGTTGGAAAATAAGTTTCATTTTATGCTAGTTTATTTTAGGAAG------------CTACTAGGCA-------------AATAGCCACTT- s panTro1.chr19_random 41891980 221 + 57627672 TTTGCTTGGCTTTGAGATAAC-------TTTATGATTTTATT-----TTGAA---------------ACTACAAGCAATAAATTTTAGTAGGGGAAATGTGTAC--ATTCTTAT------------------------------TAAACAACTTTTTATTGGTTTTATGTAACTATTCTAGTTA-------------------TTAGA------ACTGAAATTCCAAGGGCTTAGGGATAGGTTGGAAAATAAGTTTCATTTTATGCTAGTTTATTTTAGGAAG------------CTACTAGGCA-------------AATAGCCACTT- s mm5.chr11 24738290 254 - 121648857 TTTTCTTGGCACATAGCAAGT-------CTTCTATTTCTATTCAACCTTGAGAAAAATTATTTGTTTATTACCAGCAGTAAATTTTAGCGGAGGAAATATGCACTTACTGTTTT------------------------------GAAACAACTTCTTTCTGAGCTTATGTAACTGTCTTTGTTA---GATGCCAATTGT---TTCATAG-----ACCGAAATTCCTAAGGATTAGTGTTCAGTTG--------------CTCTGAACTAGCTTACCTCAGTGGGACTTATTAATACCTAGTTGACA-------------AACAACC-CTT- s rn3.chr10 24756741 227 - 110733352 TGTGCTCAACCTTGAGAAAAA-------ATTGT--------------TT------------------ATTACTAGCAGTAAATTTTAGCAGAGGAAATACACACTTACTGTTTT------------------------------AAAACAACCTTTTGCC---CTTACGTAATTGTCTTTATTA---GATGCCAGTTGT---TTCATAG-----ACTAAAATTCCAAAGGGCTAGTGTTCAGTAA--------------CTTTGAACTAGCTCATCTTAGTGGGGCTTATTAACACCTAATTGATACTTAGA-----TGAACAGCC-CTT- s canFam1.chr9 16603333 300 + 53642819 ---TGTTAGCTCTGAGCAGTCTTCATTTTTTATGATTTTATT-----TTTAA---------------ACTACCAGCCATACATTTTAATAGGGGAAATGTGCAT--ATTCTCATATAGCTTCTAAAGAACTTTTTACAAAAAAATAAAGATCTTTTTACTGGATTTGAGTAACTGTTCTATTTATTAGATGTCAATTGTTTCTTTAAAACAAACTCTGAAATTT--AAGGACTCATAATAGGTTGGTGAATAAACTAG-CTGTGTACCAGCCTATCTTCGTGGAAGCTACTAGT--TAAGTAGGTGCCCAAAGCATTTAGACAGCC-TTCC a score=7786.0 s hg17.chr17_random 691688 17 + 2618010 ATCACTTAATATCAAAA s panTro1.chr19_random 41892201 17 + 57627672 ATCACTTAATATCAAAA s mm5.chr11 24738544 17 - 121648857 ATTACTTAATATTAAAA s canFam1.chr9 16603633 17 + 53642819 ATCACTTAGTATTAAAG a score=-864.0 s hg17.chr17_random 691705 4 + 2618010 TAAt----- s panTro1.chr19_random 41892218 4 + 57627672 TAAt----- s mm5.chr11 24738561 9 - 121648857 AAAAATATT a score=59302.0 s hg17.chr17_random 691709 639 + 2618010 tttttttttaagacagagtctcactctgtcagttaaactggagtgcaatggcacaatcatggttcattacagtcttgacctctgggctcaagcaatcctcctgtctctgcctcctgagtagctgcaattacaggtgtgtggcaccatgcccagcttatttttgcactttttgtagagacaaggtttcactgtattgccttttgtagagacagggtttcactttgttgcctaaactggtctcaaactcctgggctcaagcaatcctcccacct-cagcctcccaaagtgctgggattacaggcatgagctaccacacctggccTTTTCTGGGGGGACTGGTTGGGGATGGAGAataggatctcactttgttacccaagccggagtgcagtggcacaatcatgggtcagtgcagcttcatcttcctgggcttatgtaatcctcttgcctcagcctcccaagtagctgggaccacaggtgtgtgtcaccatgaccagctaatttttttttactttttaatttttttagagatggagtctcactgtgttacccaggcttatctcaaactcctgggctcaagtgatcttcctgccttgacctcccagagtattggcattacaggagcaagccattgtgcctggcc s panTro1.chr19_random 41892222 640 + 57627672 tttttttttaagacagagtctcactctgtcacttaaactggagtgcagtggcacaatcatggttcattacagtcttgacctctgggctcaagcaatcctcctgtctctgcctcctgagtagctgcaattacaggtgtgtggcaccatgcccagctaatttttgcactttttgtagagacaaggtttcactgtattgccttttgtagagacagggtttcactttgttgcctaaactggtctcaaactcctgggctcaagcaatcctcccacctccagcctcccaaagtgctgggattacaggcatgagctaccacacctggccTTTTCTGGGGGGACTGGTTGGGGATGGAGAATGggatctcactttgtcacccaagccggagtgcagtggcacaatcatgggtcagtgcagcttcatcttcctgggcttatgtaatcctcttgcctcagcctcccaagtagctgggaccacaggtgtgtgtcaccatgaccagctaatttttttttactttttaatttttttggagatggagtctcactatgttgcccaggcttatctcaaactcctgggctcaagtgatcttcctgccttgacctcccagagtattggcattacaggagcaagccattgtgcctggcc a score=1419.0 s hg17.chr17_random 692348 5 + 2618010 TGCTT s panTro1.chr19_random 41892862 5 + 57627672 TGCTT s canFam1.chr9 16603735 5 + 53642819 TGCTT a score=17850.0 s hg17.chr17_random 692353 79 + 2618010 TCTTTCACTAATAGGCTTAATCAACtttaataaaatttaga-ttaagatc---tttaaaa---------ttttttaaaaaCTGATTTTATCT- s panTro1.chr19_random 41892867 80 + 57627672 TCTTTTACTAATAGGCTTAATCAACtttaataaaatttagatttaagatc---tttaaaa---------tttttttaaaattgattttatCT- s rn3.chr10 24757025 70 - 110733352 TACTTTACTAAGAGGTTTAATCAACATCAATGAAAATTAGA-------------CTGATG---------TGTTCTAAAGATAGGTTTTAAAT- s canFam1.chr9 16603740 92 + 53642819 TCTTTTTGTAAGAGATTTAGTCAACTTTAATAAAACTTAGA-TTAAAATCTCTTCTAAAAATGTGTGGGTTTTTTTAAAGTTGGTTTTAATCT a score=50336.0 s hg17.chr17_random 692432 335 + 2618010 ----GTCACTCATATTCTTTGTCCATTCCATTTACTATGCATTCTTATTTAA-CAGGTGATAATTTTATATTCCATAAGTGCTTAAACACCATTCATTACTAAACT--------------ACATTTTTGTTTAATTTCACATAATTTTTATATAAGCAGTACTCTTTCTCAGTTTCTCTTGAACATTCAACTCATTAGT---GAGTGGTTTTCCCCAGTCA-------------TTTCCATTTTTCTTTATTTGGCTCTGATAGTTTTCCGTTTTTGTTTTTCAGAGATAATCCTTTACTATACTAAATTCTACGTG--ATTATATTTTCCACCTCTATTTGCCTATATTTATCTGCTGTCTTTTCCTTTTC s panTro1.chr19_random 41892947 336 + 57627672 ----GTCACTCATATTCTTTGTCCATTCCATTTACTATGCATTCTTATTTAACCAGGTGATAATTTTATATTCCATAAGTGCTTAAACACCATTCATTACTGAACT--------------GCATTTTTGTTTAATTTCACATAATTTTTATATAAGCAGTACTCTTTCTCAGTTTCTCTTGAACATTCAACTCATTAGT---GAGTGGTTTTCCCCAGTCA-------------TTTCCATTTTTCTTTATTTGGCTCTGATAGTTTTCTGTTTTTGTTTTTCAGAGATAATCCTTTACTATACTAAATTCTACATG--ATTATATTTTCCACCTCTATTTGCCTATATTTATCTGCTGTCTTTTCCTTTTC s canFam1.chr9 16603832 323 + 53642819 GTGGCTCATTTATATTCTTTGTCCGTTCTACT--------ATTCTTA-TTAG-CAGGTGAGAATTTTGT-----ATAGATACTTAAACACCATTCATCACTGAATCTACTTACTGCCATGATAATTCTG-TTAATTTTACCTAGTCTTTATATAAGCAGTACTGCTTTTCTGTTTATTTAGAAAGTTTAACTTGTCAGTCAACAGTGATTTTTCCCAGTCATTATTGGACATCCTTTGCAGTTTTCCTTG--TGGTCCTGGTATCTTTCTGG----------------------TTTATTAAACTAAATTTTACCTGACACTACAGGTTC---------TCACCTACATTTATCTGCTCTCTTCCCCTCTTC a score=10964.0 s hg17.chr17_random 692767 69 + 2618010 CATATATGGGCTTATTTTT-TTTTTCCCTCTTC--------TTC-------CTTTTCTACCTTTGGTATT---------TAAAAAGTTACTTAG s panTro1.chr19_random 41893283 70 + 57627672 CATATATGGGCTTATTTTTCCCTCTCACTCTTC--------TTC-------CTTTTCTACCTTTGGTATT---------TAAAAAGTTACTTAG s rn3.chr10 24757987 85 - 110733352 CATGCCTGACCTT-TTTTT-CTTTTCCTTTTTCTTTTTCTTTTT-------TTTTTTTTTTTTTGGCATGGCCAGGTAATAAGATTTTACTTTG s canFam1.chr9 16604155 73 + 53642819 CGTATAAGGACT--TTCTC-CCCCACCCTCTTT--------TTCCTTCCATCTTTTCTAGCTTTGGTAA----------TAAAAAGTTTCTGAG a score=145.0 s hg17.chr17_random 692836 2 + 2618010 GA s panTro1.chr19_random 41893353 2 + 57627672 GA s rn3.chr10 24758072 2 - 110733352 TA a score=32420.0 s hg17.chr17_random 692838 360 + 2618010 ctgagtgcactggcttacgtgtgtaatcccagcactttggcaggctgaggcgggaggattgcttgagccccggtgttcaaggctgcagtgagctacgatggtgcccctgccactgcagcctgggcaacagaatgagaccctgtctGGGTTTGGGGGAGAAGTTATTTACAATGTTTTGAAAATATCCTTTGGCccaggcatggtggctcacacctgtaatcccagcactttgggaggccga-ggcaggtggatcacttgaggtcaga-agtttgagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaattagccaggcatagtgatacatgcctgtaatcccag s panTro1.chr19_random 41893355 362 + 57627672 ctgagtgcactggcttacgtgtgtaatcccagcactttggcaggctgaggcgggagggttgcttgagccccggtgttcaaggctgcagtgagctacgatggtgcccctgccactccagcctgggcaacagaatgagaccctgtctGGGTTTGCGGGAGAAGTTATTTACAATGTTTTGAAAATATCCTTTGGCccaggcatggtggctcacacctgtaatcccagcactttgggaggccgatggcaggtggatcacttgaggtcagagagttccagaccagcctggccaacatggcaaaaccccgtctctactaaaaatacaaaaattagccaggcatagtgatacatgtctgtaatcccag a score=4597.0 s hg17.chr17_random 693198 85 + 2618010 ctactggtgaacactccagcctggtgacaaaacaaga-ctttgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGAAAGGAAAA s panTro1.chr19_random 41893852 69 + 57627672 ctactggtgaacactccagtctggtgacaaaacaagaactttttctcaaaaaaaaaaagaaaa-----------------ggaaaa a score=163.0 s hg17.chr17_random 693283 2 + 2618010 GA s panTro1.chr19_random 41893921 2 + 57627672 ga s mm5.chr11 24739140 2 - 121648857 GC a score=7995.0 s hg17.chr17_random 693285 44 + 2618010 AAATGACCCTCAGATATAATTCTAATATCACCAGTTGGCCTTTC s panTro1.chr19_random 41893923 44 + 57627672 aaaTGACCCTCAGATATAATTCTAATATCACCAGTTGGCCTTTC s mm5.chr11 24739142 27 - 121648857 AGATAGCCCTCTGGTTTCCT-----------------GCCCAGC s canFam1.chr9 16604238 44 + 53642819 AAATGTCTCTCAGGCCTGATGCCAAAGTCAGCAGTTGGCCTTTC a score=10398.0 s hg17.chr17_random 693329 33 + 2618010 TTGACATCTCTTTTAGTCTTCTC-----TCTTTTTCAG s panTro1.chr19_random 41893967 33 + 57627672 TTGACATCTCTTTTAGTCTTCTC-----TCTTTTTCAG s mm5.chr11 24739169 38 - 121648857 CTGATCCCTTTTGCAGTAAACTCAAGAATCTTTCTCTT s rn3.chr10 24758491 30 - 110733352 TTGGCATTTCTTTTA---TTCTC-----TTTTTTTCTC s canFam1.chr9 16604282 33 + 53642819 TTAGCATCTCTTTTAAGCATCTT-----TTTTGTTCGG a score=39102.0 s hg17.chr17_random 693362 96 + 2618010 AAATGTGAGTTCTTTGCCAAATGTTTTGAACTGAATTTTAGGTCATTAAATTGTGAGTTTTGGAATATAGTGGAAGGGACATGTGAGTGTTTTAGA s panTro1.chr19_random 41894000 96 + 57627672 AAATGTGAGTTCTTTGCCAAATGTTTTGAACTGAATTTTAGGTCATTAAATTGTGAGTTTTGGAATACAGTGGAAGGGACATGTGAGTGTTTTAGA s mm5.chr11 24739326 93 - 121648857 AAATATGAGTTCATTACTAACTGGTTTCTGTTGAGTTTTACTTTACAAAATTACAAATTTTCAAGTACAATAGAAGGGAGACATG---TTTTTCCA s rn3.chr10 24758523 93 - 110733352 AAATATGAGTTTATTGATAACTGGTTTCTGTTGAATTTTACTTTACAAAGTTACAGATTTTCAAGTACAGTAGAAGGGAGACATG---CGTTCCCA s canFam1.chr9 16604315 89 + 53642819 ACATGTGAGTGAGTTACTAAATATTTTTCACTGAATTTTGGCTTATTAAGTTGTAAATT-----GAATAGTGGAAGGG--ACGTGAGTTTTTCAGA a score=5567.0 s hg17.chr17_random 693458 26 + 2618010 TTAGTAGAATGACAATCATTTCAATT s panTro1.chr19_random 41894096 26 + 57627672 TTAGTAGAATGACAATCATTTCAATT s mm5.chr11 24739419 26 - 121648857 GTAATGCAGTGACTATTCCTATGTGT s rn3.chr10 24758616 26 - 110733352 GTAATGCAGTAACTGCTCCTATGTGT s canFam1.chr9 16604404 26 + 53642819 TTAGTGGAATGATACGTATTTTGTTT s galGal2.chrUn 27914005 25 - 165033910 TTGGTA-AATGGAAGCCCTTGGAATC a score=5072.0 s hg17.chr17_random 693484 5 + 2618010 TCTTT s panTro1.chr19_random 41894122 5 + 57627672 TCTTT s mm5.chr11 24739445 5 - 121648857 CCTTC s rn3.chr10 24758642 5 - 110733352 CCCTC s canFam1.chr9 16604430 5 + 53642819 TCTTT s galGal2.chrUn 27914030 5 - 165033910 TTTTT s danRer1.chr11 6201916 5 + 27258617 TCTCT a score=356749.0 s hg17.chr17_random 693489 200 + 2618010 AAGT-ATTTTCATCTTC-TGTTTT-TAGGAATGGTGGACTCATCTTTGGTTAAATGAAGGTTTTGCATCCTGGATTGAATATCTGTGTGTAGACCACTGCTTCCCAGAGTATGATATTTGGACTCAGTTTGTTTCTGCTGATTACACCCGTGCCCAGGAGCTT-GACGCCTTAGATAACAGCCATCCTATTGAAGTGAGCCATA s panTro1.chr19_random 41894127 201 + 57627672 AAGT-ATTTTCATCTTT-TGTTTT-TAGGAATGGTGGACTCATCTTTGGTTAAATGAAGGTTTTGCATCCTGGATTGAATATCTGTGTGTAGACCACTGCTTCCCAGAGTATGATATTTGGACTCAGTTTGTTTCTGCTGATTACACCCGTGCCCAGGAGCTTTGACGCCTTAGATAACAGCCATCCTATTGAAGTGAGCCATG s mm5.chr11 24739450 201 - 121648857 ACTCGATCTGCCTTTTT-CTTTTT-TAGGAATGGTGGACTCATCTCTGGTTGAATGAAGGCTTTGCATCCTGGATTGAGTATCTTTGTGTAGACCACTGCTTTCCAGAGTATGATATCTGGACTCAGTTTGTTTCTGCAGATTATACCCGTGCCCAGGAACTT-GATGCCTTAGATAACAGCCATCCTATTGAAGTGAGCTATA s rn3.chr10 24758647 201 - 110733352 ACTC-GCTTCTACCTTTACTCTTT-TAGGAATGGTGGACTCATCTCTGGTTGAACGAAGGCTTTGCATCCTGGATTGAGTACCTTTGTGTAGACCACTGCTTCCCAGAGTATGATATCTGGACTCAGTTTGTTTCTGCAGATTATACCCGTGCCCAGGAACTC-GATGCCTTAGATAACAGCCATCCTATTGAAGTGAGCTATA s canFam1.chr9 16604435 200 + 53642819 ACAC-ATTTCTTTCTTT-TGTTTT-TAGGAATGGTGGACTCATCTTTGGTTAAATGAAGGCTTTGCATCATGGATTGAATATTTGTGTGTAGACCACTGCTTCCCAGAATATGATATCTGGACTCAGTTTGTATCTGCTGATTACACCCGTGCCCAGGAACTT-GATGCTTTAGATAACAGCCATCCTATTGAAGTGAGCCATA s galGal2.chrUn 27914035 201 - 165033910 CTTC-ATTCCACCTTCT-CATTTTCCAGGAATGGTGGACCCATCTTTGGCTGAACGAAGGGTTTGCCTCCTGGATTGAGTACCTGTGCGTCGATCACTGCTTTCCAGAGTATGACATCTGGACTCAGTTTGTTTCTGCTGATTACACACGAGCTCAAGAGCTC-GATGCCTTAGACAACAGTCATCCGATTGAAGTAAGTCTTG s fr1.chrUn 199216093 200 - 349519338 ATAC-ACATTTTATCTG-TGTAAA-CAGGAATGGTGGACCCATCTGTGGCTTAATGAAGGATTTGCATCATGGATCGAGTACCTTTGTGTGGACCACTGCTTCCCAGAATACGACATCTGGACCCAGTTTGTGTCGGCTGACTATACCCGTGCTCTGGACCTG-GACGCTTTGGACAGCAGCCATCCCATAGAGGTTAGATACA s danRer1.chr11 6201921 200 + 27258617 CTCT-CTTTTTTTCCTC-TCTCTG-CAGGAATGGTGGACCCATTTATGGCTTAATGAAGGCTTTGCATCTTGGATCGAGTACCTCTGTGTGGACCACTGTTTTCCCGAATACGACATCTGGACCCAGTTTGTATCTGCTGATTACACCAGGGCTCTGGACCTG-GATGCGCTAGATAACAGCCACCCTATTGAGGTCCGCAAGA a score=4889.0 s hg17.chr17_random 693689 5 + 2618010 --CTTTC s panTro1.chr19_random 41894328 5 + 57627672 --CTTTC s mm5.chr11 24739651 5 - 121648857 --CTTTG s rn3.chr10 24758848 5 - 110733352 --CCTTG s canFam1.chr9 16604635 5 + 53642819 --CTTTT s galGal2.chrUn 27914236 7 - 165033910 TCCTTCC s fr1.chrUn 199216293 7 - 349519338 GACTTTC a score=24632.0 s hg17.chr17_random 693694 104 + 2618010 TAACCATTAGCCTATGACTGCTCTCATTTACAAT--GAAATACGTAATTTGTTACAT----AGA---TACTTTGGACTT---TGAAAAGA------------------AGAGAAAATAGCATGGGTGATTTT---------AC s panTro1.chr19_random 41894333 104 + 57627672 TAACCATTAGCCTATGACTGCTCTCATTTACAAT--GAAATACGTAATTTGTTACAT----AGA---TACTTTGGACTT---TGAAAAGA------------------AGAGAAAATAGCATGGGTGATTTT---------AC s mm5.chr11 24739656 96 - 121648857 CAATCA---------------------TTTCAGT--GAAATAAGTAATTTGTTGTGTCTCAGGA---TGTTTAGGATTC---TGAAATGC------------------AAAAAAAGCTGCATGGATGGCTTCCTTTGGGTGAC s rn3.chr10 24758853 114 - 110733352 CAACCA---------------------TTTCAGT--GAAATAAGTAACTTGTTATGTCTCAGGA---TGTTTAAGATTC---TGAAATGCAAAAAAAGAAAAAAAGAAAAAAAAAGCTGCATGGGTGATTTCCTTTGTGTGAT s canFam1.chr9 16604640 107 + 53642819 CAATCATTGGTCT----TTACTCTCATTTTTAAT--GACATAAGTAATTTGTTACAC----AGA---TACTTAGGATCC---TGAAAGG-------------------AAAGAAAATTGCACAGGCAATTCA-CCTGTTTGTA s galGal2.chrUn 27914243 116 - 165033910 TAGTGGTTATCTCCCTTCTTTTTTTTTTGTCAGCTGGATGTGAGTTTTTTGTTCCCTGTTAAGAAAGAACTGTACACTCACTCGTAATGC------------------AAAGAAAAACCCAAAATTGCATTC---------AC a score=30196.0 s hg17.chr17_random 693798 80 + 2618010 TGGTTCAT----------ATTTCTAGT-----CTTGAAAAGCTAGTAAGTCTAAGTTCTAATTAAACATTTCTTTTAAAGGTAGGCAGTAAAAAA s panTro1.chr19_random 41894437 80 + 57627672 TGGTTCAT----------ATTTCTAGT-----CTTGAAAAGCTAGTAAGTCTAAGTTCTAATTAAACATTTCTTTTAAAGGTAGGCAGTAAAAAA s mm5.chr11 24739752 79 - 121648857 TGATT--T----------ATTTTTAGCTCATGCCTGAAACTC---TTAGACTAAGTTCTAAGT-AGCATTTCTCTTTAAAGTAGGGAATGTAAAG s rn3.chr10 24758967 91 - 110733352 TGATTGATTGATTGATTGGTTTTTAGCTCATGCCCAAAACTC---TTAGGCTAAATTCTAAGT-GATATTTCTCTTTAAGGTGGGGAATATAAAG s canFam1.chr9 16604747 78 + 53642819 TAGCTCAT----------ATTTTCAGT-----CTTGAAAATGTCACAAGGCTAAATACTAATT--ATGTTTCTTTTTAAGGTAGGCAGTATAAAA a score=546.0 s hg17.chr17_random 693878 1 + 2618010 A s panTro1.chr19_random 41894517 1 + 57627672 A s mm5.chr11 24739831 1 - 121648857 A s rn3.chr10 24759058 1 - 110733352 A a score=842.0 s hg17.chr17_random 693879 10 + 2618010 AATTGGTCTg s panTro1.chr19_random 41894518 10 + 57627672 AATTGGTCTg s rn3.chr10 24759059 10 - 110733352 ATTTTTTGTA a score=26929.0 s hg17.chr17_random 693889 295 + 2618010 gccaggcgcagtggcttacgcctgtaatcctagcattttgggaggctgaggcgggtggatcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccccgtctttactaaaaatacaaaattagctgggcacggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacaagagcaaaaaa-ctctgccaaaaaaaa-gaaaaa s panTro1.chr19_random 41894528 297 + 57627672 gccaggcgcagtggcttacgcctgtaatcctagcattttgggaggctgaggcgggtggatcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccccgtctttactaaaaatacaaaattagctgggcacagtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcggtgagccgagatcgtgccgttgcactccagcctgggcaacaacagcaaaaaaactctgccaaaaaaaaagaaaaa a score=25471.0 s hg17.chr17_random 694184 147 + 2618010 GAGTAGTATGGGAGAAGTCATACCTATTGGG---------------TAACACTATGGTTCCATTGTTTATGTCAAGGAAAATTCTGGACATATT------TTATTGTCAGGGTCTG-TTTTGTGAATACTTTAATTCTCTTGACTTAGCCTATCCCTACTT----CAGTTTAT s panTro1.chr19_random 41894825 147 + 57627672 GAGTAGTATGGGAGAAATCATACCTATTGGG---------------TAACACTATGGTTCCATTGTTTATGTCAAGGAAAATTCTGGACATACT------TTATTGTCAGGGTCTG-TTTTATGAATACTTTAATTCTCTTGACTTAGCCTATCCCTACTT----CAGTTTAT s canFam1.chr9 16604886 172 + 53642819 GAATACTATAGGA-AAACCATGCCTGTTGGGGCAGTATGCACAGGAGAACGTTATGATTCTGTTGTTTGTTTCAAAGAAAATTCTAAACATATTCTTTTATTGTTGTCATTGTCTGCTTTTATATATATTGTATTTCTCTCGAATTAACCTATCCTTATTTTGGCTAGTTTAT a score=23571.0 s hg17.chr17_random 694331 43 + 2618010 ATATATAAATTTTGTATCTAAAGAACTAGAGTTATAATCCTAC s panTro1.chr19_random 41894972 43 + 57627672 ATATATAAATTTTGTATCTAAAGAACTAGAGTTATAATCCTAC s mm5.chr11 24740894 43 - 121648857 GTTTATACATTTTGCATCCAAAGAACTGGAGTTATAGTCCTGT s rn3.chr10 24759791 42 - 110733352 GTTTATAAATTTTGCATC-AAAGAGCTGGAGTTATAGTTCTGC s canFam1.chr9 16605058 42 + 53642819 ATGAACAAATTTTGCCTCCAAAGGACTAGACTTCTAGT-CTAC a score=91.0 s hg17.chr17_random 694374 1 + 2618010 T s canFam1.chr9 16605100 1 + 53642819 T a score=273.0 s hg17.chr17_random 694374 1 + 2618010 T s panTro1.chr19_random 41895015 1 + 57627672 T s mm5.chr11 24740937 1 - 121648857 T a score=17281.0 s hg17.chr17_random 694375 157 + 2618010 TCAACATATTTAA----------------------------------------------TTAGGCTCCCATATAA-TTGTAATT----CATTACAAT--TAG-TGCAAGAAATCTAATGTTCT-TCA--CCTCCATGTCTTCCTCATCACTCCTCTGCAACTACCCCAAAAATAAACAGAACCATAGTGGCTTCTTTCCCAGCAGAACAAAGCC s panTro1.chr19_random 41895016 159 + 57627672 TCAACATATTTAA----------------------------------------------TTAGGCTCCCATATAAATTGTAATT----CATTACAAT--TAG-TGCAAGAAATCTAATGTTCTCTCA--CCTCCATGTCTTCCTCATCACTCCTCTGCAACTACCCCAAAAATAAACAGAACCATAGTGGCTTCTTTCCCAGCAGAACAAAGCC s mm5.chr11 24741176 162 - 121648857 TTAATATATATAAGTGTGTGTGTGTGTGTGCGCGCGCGTGTGTATGTGAGTGTATGTGCGTGTGTGTGTATGTGA-GTGTATAT----AGTTATAATACTAG-TGGAACAAATCAAATCTGTT-------------------------------------------TAAGAATAAATAGAATGTTCGCAGCTTGACTTTGATTTGATCAAA--- s canFam1.chr9 16605101 149 + 53642819 -TGACATATTTAA----------------------------------------------CTGGGGTCCTATGTAA-TTATAAGTAGGCCATTACAGT--TAATTGCAAGAAATCAAATGTTTT-TCATCTCTCCATTCCTCCCTCTCCAATTCCC--------------AAATAAAAAGATCTGTAGTGATTTGCCTCCCAGCAACGCTGAGCC a score=43652.0 s hg17.chr17_random 694532 154 + 2618010 AGGACTGGAACCCAAGCTCTAAGGGATGACAGGA--------------ATCATGT--TCTATTCAACTTTATTATTATTAGTTACTACA-TTTTTTTGAGGACCATCGTTATAC-ATTATGAGTGAG-TTAAAGGCAGAAAA-----ATGTAAGTTAGAAGGGTTTTCCTA-GAAAGCG s panTro1.chr19_random 41895175 156 + 57627672 AGGACTGGAACCCAGGCTCTAAGGGATGACAGGA--------------ATCATGT--TCTATTCAACTTTATTATTATTAGTTACTACA-TTTTTTTGAGGACCATCGTTATAC-ATTATGAGTGAGGTTAAAGGCAGAAAA-----ATGTAAGTTAGAAGGGTTTTCCTAAGAAAGCG s mm5.chr11 24741338 160 - 121648857 AGAG--AGAATCTAGGCTATGAACAATAACAGGGAGTTAAAAGATTACATATTGT--TTTATTTAAGTTTGTTATTCTTTTTT----TT-TTTTTTTGAGG---ATTGGCATACTTTTATGAGTAAG-TTAAAAGAAGAATA-----TCATGAGTTAGAAGGGTTTTCCTA-GAAAGCT s rn3.chr10 24760284 120 - 110733352 AAAAAGAGGACCTAGGCTGTAA-TAATAGCAGGG--------------A------------------------ATTAAGAGGATATGTA-TTATTTTGAGG---ATTATCATACTTTTATGAGTTAG-TTAAAAGAAG--------------AGTTAGAAGGGTTTTCCTA-GAAAGCT s canFam1.chr9 16605250 151 + 53642819 ------------AAGACCCTTAGAAATGGTGGGG--------------ATCATGTTGTATATTCTACTTTATTAGTGTTAGTCACTACAGTGTTTTTAAGAATCATCATAGTACATTTATGAGTGAG-CTAAAGGCAGAAAAGTATCTTATGAGTTAGGAGGGTTTTCCTA-GAAAGCT a score=22576.0 s hg17.chr17_random 694686 31 + 2618010 TTTTATGTAATTCAGTAT-TACAGGC-TATCTG s panTro1.chr19_random 41895331 33 + 57627672 TTTTATGTAATTCAGTATGTACATTCATATCTG s mm5.chr11 24741498 31 - 121648857 TTTTATGTAATTCAGTGT-TACAGGC-TGTCTG s rn3.chr10 24760404 31 - 110733352 TTTTATGTAATTCAGTAT-TACAGGC-TGTCTG s canFam1.chr9 16605401 31 + 53642819 TTTTATGTAATTCAGTAT-TACAGGC-TGTCTG s danRer1.chr11 6202273 27 + 27258617 TTTAGCCTGATGAAATAT-T----GA-TCTCTG a score=12092.0 s hg17.chr17_random 694717 10 + 2618010 CTTCCTGTCA s panTro1.chr19_random 41895364 10 + 57627672 CTTCCTGTCA s mm5.chr11 24741529 10 - 121648857 CTTCCTGTCA s rn3.chr10 24760435 10 - 110733352 CTTCCTGTCA s canFam1.chr9 16605432 10 + 53642819 CTTCCTGTCA s fr1.chrUn 199216300 10 - 349519338 ATTCATGGCA s danRer1.chr11 6202300 10 + 27258617 AGTCCTGTTT a score=5436.0 s hg17.chr17_random 694727 4 + 2618010 TAAC s panTro1.chr19_random 41895374 4 + 57627672 TAAC s mm5.chr11 24741539 4 - 121648857 TAAC s rn3.chr10 24760445 4 - 110733352 TAAC s canFam1.chr9 16605442 4 + 53642819 TAAC s galGal2.chrUn 27914454 4 - 165033910 TCAC s fr1.chrUn 199216315 4 - 349519338 CTAC s danRer1.chr11 6202310 4 + 27258617 CAAt a score=13805.0 s hg17.chr17_random 694731 20 + 2618010 CCTGAATCACAC-------TGTCT-GC--C s panTro1.chr19_random 41895378 21 + 57627672 CCTGAATCACAC-------TGTCTTGC--C s mm5.chr11 24741543 20 - 121648857 CCTGAATCACAC-------TGTCT-GC--C s rn3.chr10 24760449 20 - 110733352 CCTGAATCACAC-------TGTCT-GC--C s canFam1.chr9 16605446 20 + 53642819 CCTGAATCACAC-------TGTCT-GC--C s galGal2.chrUn 27914458 22 - 165033910 TGTTAATTATCC-------TCTCC-ATCAC s fr1.chrUn 199216319 27 - 349519338 ATGGAATCTCATTCTGTTGTGTGT-TC--C a score=222649.0 s hg17.chr17_random 694751 109 + 2618010 AGGTCAGTGTGGGCCATCC-ATCTGAGGTTGATGAGATATTTGATGCTATATCATATAGCAAAGGTGCATCTGTCATCCGAATGCTGCATGACTACATTGGGGATAAGGT s panTro1.chr19_random 41895399 110 + 57627672 AGGTCAGTGTGGGCCATCCCATCTGAGGTTGATGAGATATTTGATGCTATATCATATAGCAAAGGTGCATCTGTCATCCGAATGCTGCATGACTACATTGGGGATAAGGT s mm5.chr11 24741563 109 - 121648857 AGGTCAGTGTGGGCCATCC-GTCTGAGGTTGATGAGATATTTGATGCTATATCATATAGCAAAGGTGCATCTGTAATCCGAATGCTACATGACTACATTGGTGATAAGGT s rn3.chr10 24760469 109 - 110733352 AGGTCAGTGTGGGCCATCC-ATCTGAGGTTGATGAGATATTTGATGCTATATCATACAGCAAAGGTGCATCTGTAATCCGAATGCTACATGACTACATTGGCGATAAGGT s canFam1.chr9 16605466 109 + 53642819 AGGTCAGTGTGGGCCATCC-TTCTGAAGTTGATGAGATATTTGATGCTATATCATATAGCAAAGGTGCATCTGTCATCCGAATGCTCCATGACTACATTGGGGACAAGGT s galGal2.chrUn 27914480 109 - 165033910 AGGTTAGTGTTGGCCATCC-ATCCGAAGTAGATGAAATATTTGATGCTATTTCTTACAGCAAGGGAGCATCTGTAATCCGAATGCTGCACGACTACATTGGTGATGAGGT s fr1.chrUn 199216346 109 - 349519338 AGGTGAATGTGGGTCATCC-ATCAGAGGTTGATGAAATCTTTGACGCCATCTCGTACAGCAAAGGAGCATCTGTGATCCGCATGTTGCACAACTACATAGGAGATGAGGT s danRer1.chr11 6202362 109 + 27258617 AGGTTGATGTCGGACACCC-TTCGGAAGTGGATGAAATATTCGATGCCATATCATACAGCAAAGGGGCCTCTGTGATTCGCATGCTGCATAACTACATTGGCGATGAGGT a score=1894.0 s hg17.chr17_random 694860 4 + 2618010 -AAAA s panTro1.chr19_random 41895509 4 + 57627672 -AAAA s mm5.chr11 24741672 4 - 121648857 -AAAT s rn3.chr10 24760578 4 - 110733352 -AAAT s canFam1.chr9 16605575 4 + 53642819 -AAAA s galGal2.chrUn 27914589 4 - 165033910 -AAAA s danRer1.chr11 6202471 4 + 27258617 GAGA- a score=10322.0 s hg17.chr17_random 694864 42 + 2618010 A------------AAAAAAAC---TTTAAGTA--TTT---CATTCTTTCATGGTGAAATCAT s panTro1.chr19_random 41895513 45 + 57627672 A------------AAAAAAACAACTTTAAATA--TTT---CATTCTTTTATGGTGAAATCAT s mm5.chr11 24741676 39 - 121648857 A------------ATAAAAAT------AATAA--TTC---CAATCCTGCATTGTGAAATCAC s rn3.chr10 24760582 42 - 110733352 A------------ATAAAAAT---CATAATAA--TTC---CAATCCTGTATTGTGAAATCAC s canFam1.chr9 16605579 44 + 53642819 A------------AAGCAATT---TTAAAAAATCTTT---CATTCTTTTATGGTAAAATCGT s galGal2.chrUn 27914593 57 - 165033910 AGTCTGTTGTCAGGAGCTAAC---TGTAGGTT--TTCAGATATTTCTACACTACAAAAACCT a score=0.0 s hg17.chr17_random 694906 1 + 2618010 A a score=726.0 s hg17.chr17_random 694906 2 + 2618010 AA s panTro1.chr19_random 41895558 2 + 57627672 AA s mm5.chr11 24741715 2 - 121648857 AG s galGal2.chrUn 27914650 2 - 165033910 AA a score=0.0 s hg17.chr17_random 694906 1 + 2618010 A a score=67.0 s hg17.chr17_random 694907 2 + 2618010 AG s canFam1.chr9 16605623 2 + 53642819 GG s galGal2.chrUn 27914651 2 - 165033910 AA a score=100.0 s hg17.chr17_random 694908 1 + 2618010 G s panTro1.chr19_random 41895560 1 + 57627672 G a score=4609.0 s hg17.chr17_random 694909 70 + 2618010 AGTTTTGCATGAAAAAAAG--TCTCACTTTATTTGGATTA--AGTTCCCAAATAGTT-------------------------------TCTGGCTTGT---CATTTTT s panTro1.chr19_random 41895561 70 + 57627672 AGTTTTGCATGAAAAAAAG--TCTCACTTTATTTGGATTA--AGTTCCCAAATAGTT-------------------------------TCTGGCTTGT---CATTTTT s rn3.chr10 24760624 54 - 110733352 AGTTTT------AAAGAAG---------------GAATAA--AATTTTGATCTGATT-------------------------------TTTTGTTTATTGACCTTTTT s canFam1.chr9 16605625 103 + 53642819 TGTTTTGCATGGAAAAATGTGTCTGCTTTTATTTAGATTG--AGTTCTTAAGTAATTTTTCTAGACTTTGGAAGGATATTAACTCCGATCTGGGTTAT---CTTCTTT s galGal2.chrUn 27914653 48 - 165033910 --------------------------GTTTCTGTACATTATTTATTTCCAAGACTTT-------------------------------TCTTCTGTGT---GGTTTTT a score=0.0 s hg17.chr17_random 694979 14 + 2618010 TTTAATGACCAAAA a score=546.0 s hg17.chr17_random 694979 1 + 2618010 T s panTro1.chr19_random 41895631 1 + 57627672 T s rn3.chr10 24760678 1 - 110733352 T s canFam1.chr9 16605728 1 + 53642819 T a score=86.0 s hg17.chr17_random 694980 13 + 2618010 TT-AATGACCAAAA s panTro1.chr19_random 41895632 14 + 57627672 TTTGATGACCAAAA s rn3.chr10 24760872 9 - 110733352 CT-ATTGACC---- a score=10281.0 s hg17.chr17_random 694993 81 + 2618010 AGAATGAGAATTCAATTATTTGAAGTTGACTACTGTGGTCTCTTAGATGAGTGATGTGCAGGTGTGTTTG---------GGAGTGGAAAT s panTro1.chr19_random 41895646 81 + 57627672 AGAATGAGAATTCAATTATTTGAAGTTGACTACTGTGGTCTCTTAGATGAGTGATGTCCAGGTGTGTTTG---------GGAGTGGAAAT s rn3.chr10 24760881 74 - 110733352 ----------------TTTTTTATATTGCTTATTAAGGGTTCCTAGAAGAATGATACACAAGTTAGTATGCATGTGGTAAGAGTGGGAAT s canFam1.chr9 16605729 57 + 53642819 ----------------CTTTTTATATTGACTCTT---GTCTCTTAGATGAATGATGTGAAAATGTGTTTG--------------GGGGAT s galGal2.chrUn 27914701 59 - 165033910 GGGCTG----------TATTTGAACTTACCTG------------GGAGAAATAAGGCGGAGGGAAAATAC---------AGAAATGAAAT a score=11121.0 s hg17.chr17_random 695074 50 + 2618010 ----GGGAGGCTGTTATAAAACTTAAGAGCAAGAATAGAAGGCATAGAGTACGC s panTro1.chr19_random 41895727 50 + 57627672 ----GGGAGGCTGTTATAAAACTTAAGAGCAAGAATAGAAGGCATAGAGTACGC s canFam1.chr9 16605790 50 + 53642819 ----GGGCGGCTGGCATAAAACTTGAAAGCAAAAGTAGAAGGCAAAGAGTATGC s galGal2.chrUn 27914760 54 - 165033910 TATTTCAGTGCTGAAATCTGGCTTAAGGAAAAACACAGAAGAGTCAATCTTTGT a score=-31.0 s hg17.chr17_random 695123 1 + 2618010 C s rn3.chr10 24761743 1 - 110733352 T a score=35227.0 s hg17.chr17_random 695124 64 + 2618010 ATTATTAAATAAAAGGCAGTAG---GCATCAGAAGGATATATGTGTTTCAG-----TGTATCTGATACTTGA s panTro1.chr19_random 41895777 64 + 57627672 ATTATTAAATAAAAGGCAGTAG---GCATCAGAAGGATATATGTGTTTCAG-----TGTATCTGATACTTGA s mm5.chr11 24742464 64 - 121648857 ACTCTTAGATAAAACTTAATGG---GCTTCAGAAGGATGCATGCTTTTCAG-----CATATCTGATATTTTA s rn3.chr10 24761744 64 - 110733352 ACTCTTAGGTAAAACTTAATGG---GCTTCAAAAGGATTCATGCTTTTCAG-----CATATCTGATATTTTA s canFam1.chr9 16605840 64 + 53642819 ATTCTTAAATAAAAGACAGTAG---ATGTTAAAAGGATAGATGTTTTTCAG-----TAAGTCTGACACTCAA s galGal2.chrUn 27914814 68 - 165033910 ----AGCAGCAGAGTTTAGGAGGGAGTTACAGGGGGACATGTGGATCCTAGGATTCTGTGGTTGATTCTTGA a score=5631.0 s hg17.chr17_random 695188 13 + 2618010 GT-ATTTGAGTAAA s panTro1.chr19_random 41895841 13 + 57627672 GT-ATTTGAGTAAA s mm5.chr11 24742528 13 - 121648857 GG-AATTGAGTACA s rn3.chr10 24761808 13 - 110733352 GT-AATTGAATACA s canFam1.chr9 16605904 14 + 53642819 CTAATTTGAGTAAA a score=29137.0 s hg17.chr17_random 695201 67 + 2618010 TTTGTTTTTGAT-TACTAATATACAAATATACTATAAA-------TTCTGAGATCTGACTTCCCTGGATTTTAAA s panTro1.chr19_random 41895854 67 + 57627672 TTTGTTTTTGAT-TACTAATATACAAATATACTATAAA-------TTCTGAGATCTGACTTCCCTGGATTTTAAA s mm5.chr11 24742541 62 - 121648857 TTTAGTTTTGAT----AAATGTGTGTATCTGCTATAAA-------TTCTGAGATCTGACTCACTTTTACTT--AA s rn3.chr10 24761821 62 - 110733352 TTTACTTTTGAT----TAATGTGTGTATCTGCTATAAA-------TTCTGAGATTTGACTCACTTTTATTT--AA s canFam1.chr9 16605918 67 + 53642819 TTAGTTTTCGAG-TACTAATATGCAAATACACTATAAA-------TTCCAAGGTCTTAATCTCCCGGATTTTAAA s danRer1.chr11 6204936 75 + 27258617 TTTAATACTGATCTACTTAAAGATTAATTTACGTTTAAGGTCGTCTTTTGAGTTTTGGTTCTGATTGTTTTTTCT a score=5001.0 s hg17.chr17_random 695268 3 + 2618010 AAT s panTro1.chr19_random 41895921 3 + 57627672 AAT s mm5.chr11 24742603 3 - 121648857 AAT s rn3.chr10 24761883 3 - 110733352 AAT s canFam1.chr9 16605985 3 + 53642819 AAT s galGal2.chrUn 27914945 3 - 165033910 AAT s danRer1.chr11 6205011 3 + 27258617 GAT a score=141126.0 s hg17.chr17_random 695271 78 + 2618010 ----------TGTGTTTTCTCAGGACTTTAAGAAAGGAATGAACATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCGCAGGTAA s panTro1.chr19_random 41895924 78 + 57627672 ----------TGTGTTTTCTCAGGACTTTAAGAAAGGAATGAACATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCACAGGTAA s mm5.chr11 24742606 78 - 121648857 ----------TGTATTTTTTTAGGACTTTAAGAAAGGAATGAATATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCACAGGTAA s rn3.chr10 24761886 78 - 110733352 ----------TGTATTTTTTTAGGACTTTAAGAAAGGAATGAATATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCACAGGTAA s canFam1.chr9 16605988 78 + 53642819 ----------TGTGTTTTCTCAGGACTTTAAGAAAGGAATGAACATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCACAGGTAA s galGal2.chrUn 27914948 78 - 165033910 ----------TGTGTGTTCCCAGGACTTTCGGAAAGGAATGAATTTATATTTAACAAAGTTCCTGCAGAAGAATGCAGCCACAGGTAA s fr1.chrUn 199216511 78 - 349519338 ----------TTTGTCTTTGCAGGACTTCAGGAAAGGAATGAATGCATATCTTCTAAAGTTCCAGCATAAAAATGCTTCAACAGGTGA s danRer1.chr11 6205014 88 + 27258617 TGAGTAATCTTTTCTTTTTCTAGGATTTTAGAAAGGGAATGAATGCTTACCTTTTGAAGTTTCAGCACAAAAATGCATCTACTGGTAA a score=642.0 s hg17.chr17_random 695349 6 + 2618010 TCTTTA------ s panTro1.chr19_random 41896002 6 + 57627672 TCTTTA------ s mm5.chr11 24742684 6 - 121648857 TCTTTA------ s rn3.chr10 24761964 6 - 110733352 TCTTTG------ s canFam1.chr9 16606066 6 + 53642819 TCTTTA------ s galGal2.chrUn 27915026 6 - 165033910 CTGATG------ s danRer1.chr11 6205102 10 + 27258617 --GTTGACGTCA a score=1000.0 s hg17.chr17_random 695355 2 + 2618010 AT s panTro1.chr19_random 41896008 2 + 57627672 AT s canFam1.chr9 16606072 2 + 53642819 AT s galGal2.chrUn 27915032 2 - 165033910 AT s danRer1.chr11 6205112 2 + 27258617 CT a score=91.0 s hg17.chr17_random 695355 1 + 2618010 A s rn3.chr10 24761970 1 - 110733352 A a score=9119.0 s hg17.chr17_random 695357 91 + 2618010 AGCTTGAGATAG------------------------AAATGGAGAGAAAGTATTGTCACTCTATC----CAGGCTGGGACATTTTATTTTTGTTCTGA------ATACTTAACTCAAGGTCAGGA s panTro1.chr19_random 41896010 91 + 57627672 AGCTTGAGATAG------------------------AAATGGAGAGAAAGTATTGTCACTCTATC----CAGGCTGGGACATTTTATTTTTGTTCTGA------ATATTTAACTCAAGGTCAGGA s canFam1.chr9 16606074 76 + 53642819 AGCTTGAGATAG------------------------TA--GAAGAGAAGATGTTGGCACTCTATC----CAGAGCGGAACATTTACATT---TTCTAA------ATGCTTAATCT---------- s danRer1.chr11 6205114 125 + 27258617 ATCTTTGCATAGATTAAACTTTGACCCTCTAATAATAAATGACTAAACAGACTAATGACCATGGCAGCACAAATTAGAACTTCTTGTAGTAGTTTTTAGGCCTGATGCTTATTTGCATGTCAACa a score=6304.0 s hg17.chr17_random 695448 39 + 2618010 TCCATGTAAT-------AAATAAATTAGCCTTATTTGAAGCTGTGT s panTro1.chr19_random 41896101 39 + 57627672 TCCATGTAAT-------AAATAAATTAGCCTTATTTGAAGCTGTGT s canFam1.chr9 16606150 46 + 53642819 TCCGTGTGATAGATAGGAAGTAAAGTTGACCTATTTGGTGCCATGT a score=42643.0 s hg17.chr17_random 695487 483 + 2618010 Tcaggttgaatatctct--------aatctgaaatttgaaatgctccagaatctgaaactttttcttttctttctttctttttttttaattaaagttctagggtgcatgtgcacaatgtgcaggtttgttacatcagtatacatgtgccatgttggtttgctgcacccattaactcgtcatttacattaggtatttctcctaatgctatccctcccccagccccctaccccatgacaggccctggtgtctgatgttccccgccctgtgttcaagtgttctcattgttcaattcccacccaaaatctgaaactttttgagtgccaacgtgatgctcaaaggaaatgctcattggaacattttagattttggatattgcaattatagatgctcagctagtaagtataatgcaaatattccaaaatccaaaagaaatatgaaattcaaaacatttctggtcccaagcattttggataagggacactcaacctgC s panTro1.chr19_random 41896140 488 + 57627672 Tcacgttgaatatctctaatctgaaaatctgaaatttgaaatgctccagaatctgaaactttttctttcctttctttc-ttttttttaattaaagttctagggtgcatgtgcacaatgtgcaggtttgttacatcagtatacatgtgccatgttggtttgctgcacccattaactcatcatttacattaggtatttctcctaatgctatccctcccccagccccctaccccatgacaggccctggtgtgtgatgttccccgccctgtgttcaagtgttctcattgttcaattcccacccaaaatctgaaac--tttgagtgccaacatgatgctcaaaggaaatgctcattggaacattttagattttggatattccaattatagatgctcagctagtaagtataatgcaaatattccaaaatccaaaagaaatatgaaattcaaaacatttctggtcccaagcattttggataagggatactcaacctgC a score=18880.0 s hg17.chr17_random 695970 102 + 2618010 AGTAAGTCATAGGGTCAACATGAATCAGGACTCATTATCCCTTTGGTCATCCTCCAGCATTCTGCTTTCCATAACTGAATATTTTGCCAACTTAAAGAGTCT s panTro1.chr19_random 41896628 102 + 57627672 AGTAAGTCATAGGGTCAACATGAATCAGGACTCATTATCCCTTTGGTCATCCTCCAGCATTCTGCTTTCCATAACTGAATATTTTGCCAACTTAAAGAGTCT s canFam1.chr9 16606196 96 + 53642819 GTTAAGCCATGG----ATCATGAATCAGAACCCATTATCCTTCTGGTCCCCCTCCAGTAGTCTGCTTTCCAAAGCTCAGTGTCCTGTCACC--AGAGAGTCT a score=71854.0 s hg17.chr17_random 696072 793 + 2618010 GggccaggtgtggtggctcacgcctgtaatcctagcactttgggaggccaggatgtgaggactgattgagcccaggagttcaagaccagcttgcaacatagcgagaccccacctctacaaaaaatacaaaaatattagccgggtgtggtggtatgtgcctgtagtcccagctactcaggaggctgaagtgggaagggtcacttgagcccaggagtttgaggttacagtgagcaatcgtggcaccactgcactccagcctgggcaacagaacaagatcctgtctctgaaaaaataaaaaaTCAAGGGAAT--agtcatgtgttgcttaacaacagggatatgttctgagaaatatgttgtcaggcaatttcatcaatatgtgaacatcatagaatgtacttacagaaacctacacagtatgtcctaggctatatacacctagcctacatggtatataccctgttgctcctaggctacaaaatacctgtacagcatgttactgtactgaataccataggcaattataacacaatagtatttgtatacctgaacatttctcaatatagaaaagttacagtaaaaatatgatattaaagatGCTCCATCAGCtggctgatatgcctataatccgagcactttgggaggctggggcaggtggactgcttgagtccaggagtttgataccagcctgggcaccatgccaatacctcgtctctataaaaagtacaaaaattagctgggtgtggtggcatgtgcctgtagtcccagctacttgggaggctgaggtaggaggatc s panTro1.chr19_random 41896730 794 + 57627672 Gggccgggtgtggtggctcacgcctgtaatcctagcactttgggaggccaggatgtgaggactgattgagccccggagttcaagaccagcttgcaacatagcgagaccccacctctacaaaaaatacagaaatattagccgggtgtggtggtatgtgcc-gtagtcccagctactcaggaggctgaagtgggaagggtcacttgagcccaggagtttgaggttacagtgagcaatcatggcaccactgcactccagcctgggcaacagaacaagatcctgtctctgaaaaaataaaaaataaaGGGAATAcagtcatgtgttgcttaacaacagggatatgttctgagaaatatgttgtcaggcaatttcatcaatatgtgaacatcatagaatgtacttacagaaacctacacagtatgtcctaggctatatacacctagcctacatggtatataccctgttgctcctaggctacaaaatacctgtacagcatgttactgtactgaataccataggcaattataacacaatggtatttgtatacctggacatttctaaatatagaaaaggtacagtaaaaatatgatattaaagatgctccaccagctggctgatatgcctatactcccagcactttgggaggctggggcaggtggactgcttgagtccaggagtttgagaccagcctgggcaccatgccaaaacctcgtttctataaaaagtacaaaaattagctgggtgtggtggcatgtgcctgtagtcccagctacttgggaggctgaggtaggaggatc a score=18076.0 s hg17.chr17_random 696865 197 + 2618010 atagtttcaaagtgtggcacttactggttctccactcactccctcctgccgtcttgtgaagaaggtgcctgcttccccttccccttctgccatgattgtaagtttccggaactgcaagtcaattaagcctgtttcctttataaattacccaatctcaggtatttctttacatcagtgtgaaaacaaatgaatacaGT s panTro1.chr19_random 41312330 197 + 57627672 atagtttcaaagtgtggcacttactggttctccactcactccctcctgccgtcttgtgaagaaggtgcctgcttccccttccccttctgccatgattataagtttccagaactgcaagtcaattaagattgtttcctttataaattacccaatctcaggtatttctttacatcagtgtgaaaacaaatgaatacaGT a score=50771.0 s hg17.chr17_random 697062 449 + 2618010 CCCCTTCCCTGA--GGTGCCTTCTCCTTAGGCAACCAGCTGCCCCCATGCTCCTCTTCT-------------GCCCCCC-----TGGTATTTCCTTTCCCCTCATGAGGCCCAAGTGATCCACATGGCCAGCCACAGCCCCATCCTACTGCAGGCCTGTGTGGCTGCTAGAGAGGCCAGGCTCCTTTCCGCACCCCGAGGCTGCCCGATATGCTTTCTGCATCCTGTAGAAAACTGACCCACTATTCTCATACTGGTG-CAACTTCTTCCATTACCTCAAAACTGGACA------ACGTGAACTT-----GTTTCTTGTCTCTTCTTGCTAGGGCTGTCACTGGGACAGTCCGAGATGGGGGGGTGGGGGGAGACA-----atggatgaatggatggatgaatggaCAGTAGTCCAGGGAGATGTCCCTGTGTGTCCTGAACTGGGACCTTCCTCCAATGAGAAGCCTTCCTGAGTGAGTTTATAc s panTro1.chr19_random 41312527 453 + 57627672 CCCCTTCCCTGA--GGTGCCTTCCCCTTAGGCAACCAGCTGCCCCCATGCTCCTCTTTT-------------GCCCCC------TGGTATTTCCTTTCCCCTCATGAGGCCTGAGTGATCCACATGGCCAGCCCCAGCCCCATCCTACTGCAGGCCTGTGTGGCTGCTGGAGAGGCCAGGCTCCTTTCCGCACCCCGAGGCTGCCCGATATGCTTTCTGGATCCTGTAGAAAACTGACCCACTATTCTCATACTGGTG-CAACTTCTTCCAATACCTCAAAACTGGACA------ACGTGAACTTATCTTGTTTCTTGTCTCTTCTTGCTAGGGCTGTCATTGGGACAGTCCGAGATGGGGGGGTGGGGGGAGACA-----ATGGATGAATGGGTGGATGAATGGACAGTAGTCCAGGGAGATGTCCCTGTGTGTCCTGAACTGGGCCCTTCCTCCAATGAGAAGCCTTACTGAGTGAGTTTATAc s mm5.chr11 60889529 395 - 121648857 CCCCCTTCTGGAACGGTGCCTTAT--TTAGGCCTGTAGCTACATGTACCCTCCTCCATTCCAGGACTAAGTGGCCTCCTTACCATAGGCTTTCTTTTCACCTCATTAGGCCCAAGTAATCCACACAGCCATCCCCAGGTCCGCCTCACTGATGACGTG-------------------GGATTCCTTTTCTAGCCCCAAGAC--ACTGCTATGCTTTCTG---------AGGTATTGGCCC--------CAGACTGATGACACCTTTCCCCAAGACCTTAAAGCTGGACACCTCTGGCGCTGGCCC-----ATTCTGTTTCTCCACATGCT---------------------------------TTGGAGGCAGACAAACCCAGGGATGGATGGATGCATGCATG----------CATGTATGCATGCTTGTGTCCCGGGA---GGGTGACTCCACCAAGCATCAGGTCCCCTGGGTGAGCTTAGAC a score=45226.0 s hg17.chr17_random 697511 510 + 2618010 agtcatcccttggtatccatggattagttctagggtccccggggatgccaaaatccatggatcctcaagtctctgacataacatggcctagtatttacatatcagctatgcacatcctcccgtagacattagaccatctctggattattcatgatgtgtaatacaatgcagatgctacataaatggtcgtgatactggattctttagggaataatgacaagaacaaactctgcacatgttcaatagaaacataaccgtccaatttattttctgaatattttccat-ctgctgttgctgaatctacagatgcagagctcctggatacgagagccaagtgTGCTTTGAGAGTAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGCAGGTGTTGATCAGGAGGACCCTGCACTGGGGCATCTGGACGTCCTGCCTCAGGACTTGAGACTCCAGTTGGATGGCACAGGCAGACTC---------------AGCCCAGGTCAAAGCCGTCCCCTTGAAGTTTCTTTTTA s panTro1.chr19_random 41312980 526 + 57627672 agtcatcccttggtatccatggattagttctagggtccctggggatgccaaaatccatggatcctcaagtctctgacataacatggcctagtattcacatatcagctatgcacatcctcctgtagacattagaccatctctagattattcaggatgtgtaatacaatgcagatgctacataaatggtcgtgatactgtattctttagggaataatgacaagaacaaagtctgcacatgttcaatagaaatataaccgtccaatttattttctgaatattttccattctgctgttgctggatctacagatgcagagctcctggatatgagagccaagtgTGCTTTGAGAGTAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGCAGGTGTTGATCAGGAGGACCCTGCATTGGGGCACCTGGACGTCCTGCCTCAGGACTTGAGACTCCAGTTGGATGGCACAGGCAGACTCGGCACAGGCAGACTCAGCCCAGGTCAAAGCCGTCCCCTTGAAGTTTCATTTTA a score=41012.0 s hg17.chr17_random 698021 441 + 2618010 TCCCAAGCTCTTTCTGGCCCCTGGAATTTGGCATCCCCTAGGCCCTGTGTGGAAGGACAGATGAACCAGGTTTTAGATAACATGTCTAGAAGAGTGAGCCCCTACTGTGTGCCCGGCACTTTCCCCACAGGATCCTCTAGCTAGAATATCCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCAGAAATGAAAAAGCGATACCATTAGAGACACTAAAAAGACCATTAGGTAATAGTACTAGCTTTTGTATTCTGAGATCCAACAGCAGCAGTCACTTCCCTCCACCGCTATGTGTATCCCAGGACCACCCTGGGCAGGGAGGGCTGAGGTTAGGGAGCAGCCATGGATGCTCTGATGCTGGCCCTGGGCCTCGGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGGGGCAGCCGGGCCTGGCCAGAGAAG s panTro1.chr19_random 2727708 441 + 57627672 TCCCAAGCTCTTTCTGGCCCCTGGAATTTGGCATCCCCTAGGCCCTGCGTGGAAGGACGGATGAACCAGGTTTTAGATAACATGTCTAGAAGAGTGAGCCCCTCCTGTGTGCCCGGCACTTTCCCCACAGGATCCTCTAGCTAGAATATCCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCAGAAATGAAAAAGTGATACCATTAGAGACACTAAAAAGACCATTAGGTAATAGTATTAGCTTTTGTATTCTGAGATCCAACAGCAGCAGTCACTTCCCTCCACCCCTATGTGTATCCCAGGACCACCCTGGGCGGGGAGGGCTGAGGTTAGGGAGCAGCCATGGATGCTCTGATGCTGGCCCTGGGCCTCAGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGGGGCAGCCGGGCCTGGCCAGAGAAG a score=2277.0 s hg17.chr17_random 698462 18 + 2618010 AAGCACACACGTGCACAG s panTro1.chr19_random 2728149 18 + 57627672 CAACACACACGTACACAG s rn3.chr8 61730209 18 - 129061546 AAGCATGTACACATACAT a score=15455.0 s hg17.chr17_random 698480 52 + 2618010 A-TGTGTTTACCCACATACACATGTGCACGCACGTGCACAAACACATTGCAGG s panTro1.chr19_random 2728167 53 + 57627672 AGCGTGTTTACCCACATACACGTGTGCACGCACGTGCACAAACACATTGCAGG s mm5.chr10 39573650 52 - 130633972 -ATATGTGTGCCCACACACAAGTGTGTGCGCACACACACAAAGACATTATAAG s rn3.chr8 61730227 52 - 129061546 -ACATGCTTACCCACATACATGTGAACAAGCACGTGTGTATGCACACCACAGG a score=1757.0 s hg17.chr17_random 698532 7 + 2618010 CAGGCAT s panTro1.chr19_random 2728220 7 + 57627672 CAGGCAT s mm5.chr10 39573702 7 - 130633972 CAGACAT a score=50126.0 s hg17.chr17_random 698539 552 + 2618010 GTTGACGCCTCAGGCAGCGGAGGACCCTGACTCTGGGTGCTGCTGACCCGGGCAAGGCCCCACTGTGATTCGTGCCATGACCTCAGAATGTCACTGGTGCTTAG-CACCTATCTGCTCTCTGGCCTGCGTCAGTGGTCTACAGCAGTTACACACAGGCAGTGGTATCTGTGAGCAGCTCTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATGACCCAGG--CCAGCTGATTCATCAGAATCAGGTGAGCGTGACCTGCTCTCTTCCCT-CCAGGCGGACTTGGGGGCAGTGGCTACGGTGCGGGCGGTGTTGGCCTCTGTGGGGCAGCTACCGAGGAGGGTCATCCCtgagcactcaccaggcgcccgttctacactgcccgtgtagacgattggctctttcgtctccatggtggcttcgtagagtgggtgctgttcccaaatgtccccattcgacagatgagacgtctggggtcagagaggcagtaaccggccTGGGAATCCGGACATGACCCTGAGTTTTGCTCTCAGCCCTGCCGTGTGCTGTGCTGGAATT s panTro1.chr19_random 2728227 556 + 57627672 GTTGACGCCTCAGGCAGCGGAGGACCCTGACTCTGGGCGCTGCTGACCCGGGCAAGGCCCCATTGTGATGCGTGCCATGACCTCAGAATGTCACTGGTGCTTAGCCACCTATCCGCTCTCTGGCCTGCCTCAGTGTTCTACAGCAGTTACACACAGGCAGTGGTATCTGTGAGCAGCTCTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATGACCCAGGGCACAGCTGATTCATCAGAATCAGGTGAGCGTGACCTGCTCTCTTCCCTCCCAGGCGGACTTGGGGACAGTGGCTACGGTGTGGGCGGTGTTGGCCTCTGTGGGGCAGCTACGGAGGAGGGTCATCCCTGAGCACTCACCAGGCGCCCGTTCTACACTGCCCGTGTAGACGATTGGCTCTTTCGTCTCCATGGTGGCTTCGTAGAGTGGGTGCTGTTCCCAAATGTCCCCATTCGACAGATGAGACGTCTGGGGTCAGAGAGGCAGTAACCGGCCTGGGAATCCGGACATGACCCTGAGTTTTGCTCTCAGCCCTGCCGTGTGCTGTGCTGGAATT a score=54698.0 s hg17.chr17_random 699091 586 + 2618010 CAGGCCTGAACCCTGTGACCTCCCTGCCCTAGATCCCAAATCTGCCCAGGTTTCCCATCCCGATGGGGCAGAGCCTGGTCCTGGCAGAGCCACTGGTATAGAGCCACTGGTACAGATCCACTGACGGTCCTCAGAACACCTCTGTGCCCTAAGCTGGGTCCTGATGGTCGCTGTGGGCCCCACTGAACACACATGGTCCCTTGTCCGGGGGAGCCTGCTGCCCTTGGGCAGCTGTGGAAAATGAAGGAGCCCTGGAGGGCTGGCTGAGGGGAGACTATCTTCCCTTGTGTTCAAAGGGGTCCGGGCACTAGGGTTCTCCCCAGGTATTTCTTGCTCTGCGTGGTCCTCTTGAGGCCTCGCCCTCCTTTTGCCTCGAGTATTCCCAGGAGGGACGGTCCATCCAGCTGTTCTCCAGGACCAAGGACCCACTGTTCTTCCTCAGTGACCCAGGAAAATGAAGCCTCCTCCTGTTGGGACGGCTCAGAATGGTGGACTCCACAGTCCCT-CCGCGAGAGACGTGGTTTCCATGCGTACAATAGATCTTCCTCATCCCCCAAACCCAACACCCTCCTGCTCAACAGGCGTT s panTro1.chr19_random 2729082 587 + 57627672 CAGGCCTGAACCCTGTGACCTCCCTGCCCTAGATCCCAAATCTGCCCAGGTTTCCGATCCCGATGGGGCAGAGCCTGGTCCTGGCAGAGCCACTGGTATAGAGCCACTGGTACAGATCCACTGACGGTCCTCAGAACACCTCTGTGCCCTAAGCTGGGTCCTGATGGTCGCTGTGGGCCCCACTGAACACACATGGTCCCTTGTCCGGGGGAGCCTGCTGCCCTTGGGCAGCTGTGGAAAATGAAGGAGCCCTGGAGGGCTGGCTGAGGGGAGACCATCTTCCCTTCTGTTCAAAGGGGTCCGGGCACTAGGGTTCTCCCCAGGTATTTCTTGCTCTGCGTGGTCCTCTTGAGGCCTCGCCCTCCTTTTGCCTCGAGTATTCCCAGGAGGGACGGTCCATCCAGGTGTTCTCCAGGACCAAGGACCCACTGTTCTTCCTCAGTGACCCAGGAAAATGAAGCTTCCTCCTGTTGGGACGGCTCAGAATGGTGGACTCCACAGTCCCCGCCGCGAGAGACGTGGTTCCCATGCGTACAATAGATCTTTCTCATCCCCCAAACCCAACACCCTCCTGCTCAACAGGCGTT a score=58150.0 s hg17.chr17_random 699677 635 + 2618010 ATTCCTAAAGTGGCTTCACTGTTCAGACTGAAGAGCCACGGTAGCCAAAGTGATGAGCGGAGTAGAACCGAGCAGTCGGGAGAGATCTTGTTCCCTGTAGGAAACTGGGCATCGCTGAGGCCCTGAGCATCCCAGGAGGCCGATTGCACAGAGACCTCTGGTCGCTGACCCCAGTCTGCCTCCACATCCCTGGAATAGCCCATCATGGGCCCTTCACCCTTGGCAGGTGGAAACCATTCAACCTGCTGGGGCCGGTGTGTCCCCATTTCATGGCATTGGGGGACAACAGGATTCTCTGTCTAGGTCCCACTGTACTCAAGTCCTTGGGAAGACGCCCACCCCTGCTTGGGACTTGAGACTCCAGAGACTGGAGCAGCTGTGGGCCACTGGGTCTGGCCCCTTTTTCCCTGGGGGCGGCGGTGGAATGGGGGCTACGCAGCCAGCCAGCATCTGGGAGCCCGGCGAGAGCGGTTCAGGTGTT-CTCCGAAGCCGCGGCGTACAGTGTGACCTTTAGACAATTCTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGCAGTTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACGAAAAGGTACAAGTCGGTCTGCTTCTTGGAGGGAGGC s panTro1.chr19_random 41315181 636 + 57627672 ATTCCTAAAGTGGCTTCACTGTTCAGACTGAAGAGCCACGGTAGCCAAAGTGATGAGCGGAGTAGAACCGAGCAGTCAGGAGAGATCTTGTTCCCTGTAGGAAACTGGGCATCTCTGAGGCCCTGAGCATCCCAGGAGGCCGATTGCACAGAGACCTCTGGTCGCTGACCCCAGTCTGCCTCCACATCCCTGGAATAGCCCATCATGGGCCCTTCACCCTTGGCAGGTGGAAACCATTCAACCTGCTGGGGCCGGTGTGTCCCCATTTCATGGCATTGGGGGACAACAGGATTCTCTGTCTAGGTCCCACTGTACTCAAGTCCTTGGGAAGATGCCCACCCCTGCTTGGGACTTGAGACTCCAGAGACTCGAGCGGCTGTGGGCCACTGGGTCTGGCCCCTTTTTACCTGGGGGCGGCGGTGGAATGGGGGTTACGCAGCCAGCCAGCATCTGGGAGCCCGACGAGAGCGGTTCAGGTGTTACTCCGAAGCCGCCGCGTACAGTGTAACCTTTAGACAATTTTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGTAGCTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACAAAAAGGTACAAGTCAGTCTGCTTCTTGGAGGGAGGG a score=128117.0 s hg17.chr17_random 700312 1261 + 2618010 CTCTT-CCAGTGTGCCCTGGTCAAAGGGTCCTGGGCTCCCT-AGGAGCACAGGGCAGGGACGGGTGGCCA--ATGCCCCCAGGCCCTTGCACCCTTTACCTTGGA-----------CCCCTCACCAAGGCTCCCTCTGGGCTACAGGGACACCGAGCTGGGCTGCCAGAGGA----CAAGGGGCCTAAGCCTTTTCGAAGCTACAACAACAACGTCGATCATTTGGGGATTGTACAGTGAGTCCTCTGCACTCCCCTCACCCCTAAAGCACCTGTCTCAGCTCAGGGATGGG-TTTGCTTTTAGAAAGGCCTTTCT-GACGCAGGACATGTCTCACCAGGTCGGGTCAACCTCCTTTCCAGGGACAGAACTCCTCCCTGACTCCCCTGCAGGTCCAGCCCGAG---GTTGTTAGGCCAGAGGTGTGGGGCCCAT--------CTAGGGAGCCGGTGGGAATGGAGACTGGGC--TAGGTCAGGCCCCTGGGCACTCAGCAGTTCTGTCGGCAAGTGAGCACAAGAGGAGC---GGGGCAGCCTGAGGGTCTGGCCCTGTCTACTTGGA-GACAACCCCGGTGAGATGCAAGGGTTATGGCCACAGGGTGAGGGGACGCCTGGCCCAGCCTCAGGGCTGTTGTCCAGCAGGTC--TCTGA---GGGCCCACCTGCCCCTGTTCTCCCCCATT----CCCCTAGAGCTACAGCCCTCACTGTCCC----------GTGAG-----GGGAA----------AAGGCATGGTGA-CAATGGGGGCTGTAGCCCTAGGAGAACG--------------------GGGGAGAAGATGGGCAGGGCCCCGTTCTGGG-------CATCTCACGGTG---AGGCCA--GGGAGGCAGCAGGGCTCGCGGCTA---------------AAGA-CCT----GGGTCTGGTG-CTGGGAAGGG---ATCTGGGGCCGGGTAAGAGGAGCCCAGCCAGAAGCCCATCCCTCAGGGATCA--------CAGGATGGAGAGACAG---------------AGGATCCCTGGGGAGGTAGGGCGGGAGGGAGCTG--------------ACGAGCGGTGCCACTTCTGAAAC-GCAGGGTGTGTGGCTCGGGTGCAGGGAGAGGCAGG-TAGATGCTGGGAGGTCAGAACCTGCAAGGGCCTTGGGGCTGTCAAGTGGGGTGGGCCCCTGGTGCAGCCAGAGTACACCGGGCAGGTCTCAGGGCAGGCTCCCTTGACCCTGGCGGGGGGATGTGGTCACTCCCTGAGGGACTCCTGTCAGGGCCCGGTCGCCCACCCTGGGCGGCCCCCATCCCATCT--CAGGGCTAACCTTTCTCAG-CTCCAGCAGAAAGCACCACCTCGAGTCCAGGACGGGCAGCCCCATTGGGCAGCCTGACCGCCCCCCA s panTro1.chr19_random 41315817 1269 + 57627672 CTCTTCCCAGTGTGCCCTGGTCAAAGGGTCCTGGGCTCGCTAAGGAGCACAGGGCAGGGACGGGTGGCCA--ATGCCCCCAGGCCCTTGCACCCTTTACCTTGGA----------CCCCCTCACCAAGGCTCCCTCTGGGCTACAGGGACACCAAGCTGGGCTGTCAGAGGG----CAAGGGGCCTAAGACTTTTCGAAGCTACAACAGCAACGTCGATCATTTGGGGATTGTACAGTGAGTCCTCTGCACTCCCCTCACCCCTAAAGCACCTGTCTCAGCTCAGGGATGGGTTTTGCTTTTAGAAAGGCCTTTCT-GATGCAGGACATGTCTCACCAGGTCGGGTCAACCTCCTTTCCAGGGACAGAACCCCTCCCTGACTCCCCTGCAGGTCCAGCCCGAGGTTGTTGTTAGGCCAGAGGTGTGGGGCCCAT--------CTAGGGAGCCGGTGGGAATGGAGACTGGGC--TAGGTCAGGCCCCTGGGCGCTCAGCAGTTCTGTCGGCAAGTGAGCACAAGAGGAGC---GGGGCAGCCTGAGGGTCTGGCCCTGTCTACTTGGA-GACAACCCCGGTGAGATCCAAGGGTTATGGCCACAGGGTGAGGGGATGCCTGGCCCAGCCTCAGGGCTGTTGTCCAGCAGGTC--TCTGA---GGGCCCACCTGCCCCTGTTCTCCCCCATT----CCCCTAGAGCTACAGCCCTCACTGTCCC----------GTGAG-----GGGAA----------AAGGCATGGTGA-CAATGGGGGCTGTAGCCCTAGGAGAATG--------------------GGGGAGAAGATGGGCAGGGCCCCGTTCTGGG-------CATCTCACGGTG---AGGCCA--GGGAGGCAGCAGGGCTTGTGGCTA---------------AAGACCCT----GGGTCTGGTG-CTGGGAAGGG---ATCTGGGGCCGGGTAAGAGGAGCCCAGCCAGGAGCCCAGCCCTCAGGGATCA--------CAGGATGGAGAGACAG---------------AGGATCCCTGGGGAGGTAGGGTGGGAGGGAGCTG--------------ATGAGCCGTGCCACTTCTGAAAC-GCAGGGTGTGTGGCTAGGGTGCAGGGAGAGGCAGG-TAGATGCTGGGAGGTCAGAACCTGCAAGGGCCTTGGGGCTGTCAAGTGGGATGGGCCCCTGGTGCACCCAGAGTACACCGGGCAGGTCTCAGGGCAGGCTCCCTTGACCCTGGCGGGGTGATGTGGTCACTCCCTGAGGGACTCCTGTCAGGGCCCGGTCGCCCACCCTGGGCGGCCCCCATCCCATCT--CAGGGCTAACCTTTCTCAG-CTCCAGCAGAAAGCACCACCTCGAGTCCAGGACGGGCAGCCCCATTGGGCAGCCTGTCCGCCCCCCA s canFam1.chr27 10772064 1290 - 49087461 CTCTC-ATGCTATACCATTTTCAGAGGGTCCTGGGCTCCCTCAGGATT-CAGGGGAGTGA---GGAGCCATTCTGCTCCC---TCTTTTCACCTATGTCCTTGGCTCTGAGGTATCCCTGCTGTGGGGGCCCCCTCT--GTTTCAGGCACACCAAGCAGGGTCTCCAGTGGAACCTCAGGAAGATGCTGACCTCTCGCTGT----GCAGGGTCACTGACCATCATGGTTTTCTGCAGTGAGTCATCTAGA-------CACCCCTTCATCAC--ATCTCAG---GGGGGTGGTCTCCACTTACAGGAATGCCTCTCTGGAGGCAGGACCCATCTCACCAGGTCAGGCCCTCATCC--------------------CCTGGAGCCCGCTGAGG-----GCCAGAGTCTG-TGCTAGCCTAGGGCTGCGAGACCCAGGAGGCAAACCCGGAAGTGGGCAGGAATAGAG-CTGGGCCTTGGGCCGGGCACCTCTACACTCAGAGGT-----------GTGGCCTCAAGGCCTGCTTTGGGGAGGGCCATATGTGT-GCCTTCTGTACTCAGAGGGTGGATCCAGTCAGTTCAGCAGGCT----CCAGAGGGTGAGGGGCT--CTGGGACA---TGACGTCCTTTCTGTAGGAGGACAGTCTGGTCTGGAGCAAGATGGGACTGATGCTCCCCACTGACACCCTCAAGGCAAGGGCCTCCATAGCTCCAAAGGCTTCTGTGGGACTGCAGGAAGTTCAGCTATAAGACAAGGTCAGGGAGGGAGGGTGCAGAGCAGAGGGAAGGGACAACCAGCATGGACAGGAGGAGGGAAGAAGGGGAAGAGTCTGCCCTGGGGAGGGCACATGGGACGGTGGATAGAACAGTGGGAGGGAGGGAAGGTGGCTGCTGGGCTGATGCAACCACAAGAACCTCACAGAGGCTGGAGACTTGATAGAGGCCAACTGGG--CTGCTCCCAGGACCCTTGGTCACTGCTCACCACCCAGGGACAAGTGTCCATTTGGATGG---GCCAGGGGTGTGTCATGCTCAGGAATTCTGACAAGACAAGGGGTAACAGAGATGTCCTGACATAAAACAAGGGTGAAGTCACAGCACACACAGCAGGGATGATGGC-AGGTTGCAGGGAGAGGCAGGCTGGACACTAGACACTGAGGCCCTGTGAAGG-TGTGGGGACATC-AGCTGGACGATCACAGGGTGCAACCAGTCTATACT-GACAGCTCTCA-GGCTGGCGC-----ACTCTAGGACAGTGACA-GGTCACCTCCTG-GGGATGGCTGTGG-------------------GGGCGCCTCCTACCCCACTTGCCAGCAACAAACTTTCTCAGACTCCCACACAGAATGCTGCC--------------------------------CCTGGATGACCCACA a score=0.0 s hg17.chr17_random 701573 7 + 2618010 CGCCAGG a score=400.0 s hg17.chr17_random 701573 4 + 2618010 CGCC s panTro1.chr19_random 41317086 4 + 57627672 CGCC a score=291.0 s hg17.chr17_random 701577 3 + 2618010 AGG s panTro1.chr19_random 2731766 3 + 57627672 AGG a score=8336.0 s hg17.chr17_random 701580 76 + 2618010 GGCCCCAGTAACCCCGGCCAGGCTGTCCCTACACTCCTTCTTCTCCCAGGTCCTGCCCCTCCTGGGAGTCAGCCCC s panTro1.chr19_random 2731769 76 + 57627672 GGCCCCAGTAACCCCGGCCAGGCTGTCCCTACGCTCCTTCTTCTCCCAGGTCCTGCCCCTCCTGGGAGTCAGCCCC s canFam1.chr27 10773354 38 - 49087461 GGCACCTGGAAGCC-------------------------------------CCTGCCCTCCCTGGG-GTCAGCCCT a score=0.0 s hg17.chr17_random 701656 18 + 2618010 ACAGGAAGGCCCTTGTCC a score=1537.0 s hg17.chr17_random 701656 16 + 2618010 ACAGGAAGGCCCTTGT s panTro1.chr19_random 2731845 16 + 57627672 ACAGGAAGGCCCTTGT a score=200.0 s hg17.chr17_random 701672 2 + 2618010 CC s panTro1.chr19_random 41317185 2 + 57627672 CC a score=27893.0 s hg17.chr17_random 701674 238 + 2618010 TCCCTTCCCTGTGCCTTCTCCTGGGCTGAGCCCTGAGCTGGAAAGGGACAGAGCCAGTCCTTTCTGGGGGTCGGCACCCAGGCTGGGGCCGCTCCAGGCCCCGTGCAGTTCCTCA--GCTCTGCCTGGGTTGCCTTACAGTGAGACGGAGCTGCCTCCTCTGACTGCGCGGGAGGCGAAGGTAAGAGCCTGATGCGTGGA-GGGGCTGGTCCAGGGACGTAGGGACTGGGCGGGTGGTCAG s panTro1.chr19_random 41317187 239 + 57627672 TCCCTTCCCTGTGCCTTCTCCTGGACTGAGCCCTGAGCTGGAAAGGGACAGAGCCAGTCCTTTCTGGGGGTCGGCACCCAGGCTGGGGCCGCTCCAGGCCCCGTGCAGTTCCTCA--GCTCTGCCTGGGTTGCCTTACAGTGAGACGGAACTGCCTCCTCTGACTGCGCGGGAGGCGAAGGTAAGAGCCTGATGCATGGAGGGGGCTGGTCCAGGGACGTAGGGACTGGGCAGGTGGTCAG s canFam1.chr27 10773392 178 - 49087461 CTTCTCCCAAGTG-----TCCTGGGCTAAGACTTG--------------TGGGCCAG--------GGGGTCAGGGACCCAG----------------------------TCCTCAGGGCTCTGCTTCTCTTGCCTTCCAGGGAAAAGGAGCTGCCTGGCCCCAGCCCCCATGAGGCAAAGGTAATAGTCTGATCTGCTAC-AGGGCT-------GGATGTGGTCGCTGGACATGGGGCTAG a score=15584.0 s hg17.chr17_random 701912 163 + 2618010 TGAGGCAGAGGAAGCAGCTGGCCTGAGCGGTGGCGGGTGAGGGCAACACGCTGTCACTGGGAGGGGCAGCAGTCCCTGCTGGACCTGACCCCAGGTTGCTGTTCACTTTGGCAGTTTGATAAAATTCCAAAAGGAGAACCACAGTCCTGGCTTGGGGGTGGCT s panTro1.chr19_random 41317426 163 + 57627672 TGAGGCAGAGGAAGCAGCTGGCCTGAGCGGTGGCGGGTGAGGGCAACGCGCTGTCACTGGGAGGGGCAGCAGTCCCTGCTGGACCTGACCCCAGGTTGCTGTTCACTTTGGCAGTTTGATAAAATTCCAAAAGGAGAACCACAGTCCTGGCTTGGGGGTGGCT a score=50925.0 s hg17.chr17_random 702175 574 + 2618010 GATCATCTCAGAATATGCCTGGCAAACAGTAGGAGCTCAGAACTTGATGTTTTTTTCCTACAGCAACTGCTGTAGGGGATAGCAGCTAATGCAAGAGGTTGGTAAATCCTTATATATATCAAATATTGTAGAAACATAACTACATGCTACTATTTTTTCAAACCCTCCCCTCACCC-ttttttttcccctgagacagagtctcactctgctgcccaggctggagtgcagtggcgccatctcggcttggctcactgcaacctctgactcccgggttcaagcgattcttgtgcctcagtctcccaagtagctgggattacaggcatgtgccaccatgcccagctaatttttttggtatttttaatagagatggggtttctccatgttggccaggcaggtctccagctcctggcctcaagtgatctgcctgtctcggccccccaaaatgccgggTCAAACCTCTTATATCCAGTAAAACAGCCTCACTGGGTCAATGGATATCATGTGGCTGCCTAACATTTTTACTTTATAAAAGGTCTTCCTGAGGCCATTTGAAAGTATGGATCAAAACACTTT---A s panTro1.chr19 47452032 577 - 82489036 gatcatctcagaatatgcctggcaaacagtaggagctcaGAACTTGAT-TTTTTTTCCTACAGCAACTGCTATAGGGGATAGCAGCTAATGCATGAGGTTGGTAAATCCTTATATATATCAAATATTGTAGAAACATAACTACATGCTACTATTTTTTCAAACCCTCCCCTCACCCtttttttttcccctgagacagagtctcactctgttgcccaggctggagtgcagtggcgccatctcggcttggctcagtgcaacctctgactcccaggttcaagtgattcttgtgcctcagtctcccaagtagctgggattacaggcatgtgccaccatgcccaggtaatttttttggtatttttaatagagatggggtttcaccatgttggccaggcgggtctccagctcctggcctcaagtgatccgcctgtctcggccccccaaaatgctgggTCAAACCTCTTATATCCAGTAAAACAGCCTCACTGGGTCAATGGATATCATGTGGCTGCCTAACATTTTTACTTTATAAAAGGTCTTCCTGAGGCCATTTGAAAGTATGAATAAAAACACCTTAAGA a score=7195.0 s hg17.chr17_random 702749 33 + 2618010 TGAACAGGGCCACAGGTTTGCATGAGGCTTGTC s panTro1.chr19 47452609 33 - 82489036 TGAACAGGGCCACAGGTTTGCATGAGGCTTGTC s rn3.chr4 59789264 33 + 187371129 TGAACAGGGCCACCGGTTTCTTCAAGGCCTGTC a score=9237.0 s hg17.chr17_random 702782 107 + 2618010 AGTGGACCTCCAGGATGAAGACCAAAGTGACTGTGCAATTTCTAGTGGAATAATTTACACTTAAGATCTTATTTATTTATCAAAAGACTGCTGTGAGGTAGGAATTC s panTro1.chr19 47452642 107 - 82489036 AGTAGACCTCCAGGATGAAGACCAAAGTAATTGTGCAATTTCTAGTGGAATAAtttacacttaagatcttatttatttctcaaaagaccactgtgaggtaggaattc a score=71332.0 s hg17.chr17_random 752889 840 + 2618010 TTGTCCTGATGGAAGCAACAGAGGTGCTCAGG--CCACTGGGCTGCCCTAAAAACCTCCCTCTTCCAGGGCCTCTGAAGACCCTTCCCCTAGTGCAGAACACTGGGCGGTGTCCAGAGCTCCCCACAACACTGTCACCTTCCCACACTCCCGGTGGACACACTGCCCTTTGCCCTGCTCTGTGGGAGCTGGGCCCCCATCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACCAACTCCCAGCCCATGGAGAACCCGACGTCCCAGGTCAGGCCCTGGCTGGGACTCAGCCAGTCACCAGCCCCACGAGGGGCTCCAGCCCCCCTGCTCCTACAGCCCCACGGGAGGCAGGGCCTCTGGGAAGAGCTGAGGGGACCATAAACTCACCTGATGCCCCATGGTCTTGGGTTGTGACGTGGCTACCACATGCTCCTGTTGGTCTTGGAGCCCCTGGACGGTCCCGCCATTTGGGCTGTGAAATCCTGAGAAGCCCCCAGCCCATCATGAAATCAGAGCCTTCCCCCAAGATGTGGAGCCATCAGCTGCAAGAGCTGGGCAGCTGGAGAGGCCCCCAAACCCCAAGGCCTCCCACCCTCCCATCTGGTGACCCCAACATGCGGCCTTTACCCTGGGGAGGTGGGGCGGGAACATTCCCTGGAGCCTGGCTGGAGGTTCCCCTGGAGGCCTCCTGGGCCAGGGTGCAAAAAGGGCAAGCCTGACTTTCAGGCCACGACAGGGTGGCCGGAACTGGGTGGGCGCTGGGCTTCCCAGTCATCTCCTGGTAGTGGGGTCGGGCCAGGGAA-ACAGGGATGGGGAGATGCTGCCACCTGGGCTTGGT s panTro1.chr19 63832847 842 - 82489036 TTGTCCTGATGGGAGGAACAGAGGTGCTCAGGGCCCCCTGGGCTGCCCTAAAAACCTCCATCTTCCAGGGCCTCTGAAGACCCTTCCCCTAGTGCAGAACACTGGGCGGTGTCCAGAGCTCCCCACAACACTGTCCCCTTCCCACACTCTCAGTGGACACACTGACCTTTGACTTGCTCTGCGGGAGCTGGGCCCCCATCCCTGTGCCTCTGTCTCCTCCAGGGCAGGAAAGGAAACAAACTCCCAGCCCATGGAGAACCCGACGTCTCAGGTCAGGCCCTGGCTGGGACTCCGCCAGTCACCAGTCCCACGAGGGTCTCCAGTCCCCCTGCTCCTACAGCCCCACGGGAGGCAAGGCCTCTGAGAAGAGCTGAGGGGACAATAAACTCACCTGATGCCACATGGTCTTGGGTTGTGACTTGGGTACCACATGCTCCTGTTGGTCTTGGAGCCCCTGGACTGTCCCGCCATTTGGGCTGTGGAATCCTGAGAAGCCCCCAGCCCATCATGAAATCAGAGCCTTCCCCCAAGATGTGGAGCCATCAGCTGCAAGAGCTGGGCAGCTGCAGAGGCCCCCAAACCCGAAGGCCTCCCACCCTCCCATTTGGTGACCCCACCATGCGGCCTTTGCCCTGGGGAGGTGGGACAAGAACATCCCCTGGAGCCTGGCTGGAGGTTCCCCTGGAGGCCTCCTGGGCTAGGGTGCAAAAAGGGCAAGCCTGACTTTGAGGTCACAACAGAGCGGCCAGAACACGGTGGGTGCTGGGCTTCCTGGTCATCTCGTGGAAGTGGGGTTGGGCCAGGGGACACA-GGATGAGGAGATGCTGCCACCTGGGCTTGGT a score=491.0 s hg17.chr17_random 754063 5 + 2618010 CCAGC s panTro1.chr19_random 2731861 5 + 57627672 CCAGC a score=36245.0 s hg17.chr17_random 754068 265 + 2618010 CCCAGCCCAGCTGTGGCCCCCGCCGTGTCACTCAGAAAACCAGCGTCAAACCCCAGCCCTGCCTGGGATGTGGACCTTGCCTGGGGAGAGTCCCGTTCAGGCTTTTCC-AGGGCCTCTCCCCTGAGCAACAGGGGTGTCTGCGCTGGGCCTGGGCACTCACCAGGGCCTGCAGGCTGCCAGTCTGGAGTTTCCCT-AGCATCAAATGTGCCACCGGAAGCTGAAGGTGGGGATGACCAGTGCCCCCCGGAGCGAAGACCCCCCCATC s panTro1.chr19_random 2731866 265 + 57627672 CCCAGCCCAGCTGTGGCCCCCGCCGTGTCACTCAGAAAACCAGCGTCAAAGCCCAGCCCTGCCTGGGATGTGGACCTTGCCTGGGGAGAGTCCCGTTCAGGCTTTTCC-AGGGCCTCTCCCCTGAGCAACAGGGGTGTCTGCACTGGGCCTGGGCACTCACCAGGGCCTGCAGGCTGCCAGTCTGGAGTTTCCCT-AGGATCAAATGTGCCACCGGAAGCTGAAGGTGGGGATGACCAGTGCCCCCCGGAGCGAAGACCCCCCCATC s canFam1.chr9 38053031 234 + 53642819 CCCAGCCCCGCTGTggcccccctc---------------------------cccggcccg--ccggggggcgcACCCTTCCGGGCAGGGGTCGCTCGCGGCCTGAGCCGAGGGTCGCT---CGGCGCCGCGAGGGTGGCCGCGCCTGGTTTGCGGGCTCCCGTGGGCCTA-GGCCCGGGGGCCTGGAGTTTCCCCAAGCATAAAGTGGGTCTCTGGAAGCTGAAGGGGGAGATCACCAGTGTCACTGGGGGAGGTGGCCGACCTCTC a score=3083.0 s hg17.chr17_random 754333 32 + 2618010 TCTCCAGGATTGGGGGTCTGCTTAGGGGTCCA s panTro1.chr19_random 2732131 32 + 57627672 TCTCCAGGATTGGGGGTCTGCTTAGGGGTCCA a score=28064.0 s hg17.chr17_random 754365 208 + 2618010 CTTAGGGGTGTATCCCTC-AGGCATTGGAAGTGCAG-ATGGGAGG-CCCTGAGCCATGGTGGCTCCCCCAGTCCCCAGTTCTTTCTCTGTGTAAATCCAGCTTTGCAGGGACGGGGATGTGGTGCATTTCCCGGAAGAGCCGGGGTCCTGGGGCGTGGGGAGCTGGGGCTGGGTCGTGGGGAGCTGGGACTGGGGTGTGGGGAGGGGCCCA s panTro1.chr19_random 2732163 208 + 57627672 CTTAGGGGTGTATCTCTC-AGGCATTGGAAGTGCAG-ATGGGAGG-CCCTGAGCCATGGTGGCTCCCCCAGTCCCCAGTTCTTTCTCTGTGTAAATCCAGCTTTGCAGGGACGGGGATGTGGTGCATTTCCCGGAAGAGCCGGGATCCTGGGGCGTGGGGAGCTGGGGCTGGGTCGTGGGGAGCTGGGACTGGGGTGTGGGGAGGGGCCCA s canFam1.chr9 38061315 163 + 53642819 CTTTGGGATGTGTCGCTCAAAACACTGGAGGTGGGGCATGAGAGGACCCCAAGCCATAG-AATGATCCCATCCTCCAGGTCATTATCTGCTGAGATCCAGTTTTGCAGGGGAGGGGGTG----------CTAGGAGGAACTGGGGCTCT-------------------------------------GAATTGGGGTTTGGGGAGGGAGCAA a score=53471.0 s hg17.chr17_random 754573 586 + 2618010 GGGTGAGCAAGCTGAAGCAGGACTGGCACAGGCCTCTGGAGGGCCTGGGGGAGGCTGGACGCCCCGGGGTGCACCCTTGCTTGTGCACTCTTCTAAGGGTCagtctcagtttgcccatctgtaaatagggttgattgtccctgccctacgtggctgttgtgagcattcaatgagCACTACCAGTCCTGGGAGACTCTTGGTGttttttattgtgctaaaatacacaaatataaatttcccatttcaaccatttctttttgctccttcactccccacccacccacccatttttaccgtatagttcagtcgtgctcagtaccttctaccttcacgctgtgtgcaacccatctccagaagcctcttcatcctgcaaaattgaaactggacccattaaacaa-------------cacctccccattcctcctcccccggcccctggcaactgccattctgcttctttctccacatatggaatatattctatatacctAGTtttacattaatatcatagatagctttgttttcagtatgtatatctactttattcttttcagtaatttcatgtttattatgtggctgtaccatcatggtttaa s panTro1.chr19_random 2732371 599 + 57627672 GGGTGGGCAAGCTGAAGCAGGACTGGCACAGGCCTCTGGAGGGCCTGGGGGAGGCTGGACGCCCCGGGGTGCACCCTTGCTTGTCCACTCTTCTAAGGGTCagtctcagtttgcccatctgtaaatagggttgattgtccatgccctacgtggctgttgtgagcattcaatgagCACTACCAGTCCTGGGAGACTCTTGGTGttttttattgtgctaaaatacacaaatataaatttcccatttcaaccatttctttttgctccttcactccccacccacccacccatttttaccgtatagttcagtcgtgctcagtaccttctaccttcacgctgtgtgcaacccatctccagaagcctcttcatcctgcaaaattgaaactggacccattaaacaacacctccccattccacctccccattcctcctcccccggcccctggcaactgccattctgcttctttctccacatatggaatatattctatatacctAGTTTTACATTAATATCATAGATAGCTTTGTTTTCAGTATGTATATCTACTTTATTCTTTTCAGCAATTTCCTGGTTATTATGTGGCTATACCATCGTGGCTTAA a score=39119.0 s hg17.chr17_random 755159 444 + 2618010 actatccatattttaaagagttgatttatattggttgtttttacaaacagagctgcaaacaacagcggtgtgccaacaatttttgtgtgtgtgggggggggggttcttttttgtttttgtttttgtttttgagacagagtctcactctgtcgcccaggctggagtgcagtggcaagatctcggctcactgcaacctctgcctcccaggttcaagcaattctcttgcctcagcctcccaggtagctgggattataggcgcctgccaccatgcccggctaatttttgtattttagtagagatgagattttcccgtgttggccaggctggtctcgaactcctgacctcaagctatccacctgccttggcctcccaaagtgcagggattacaggggtgagccaccgtgcttggccctcctttgtttccttagatagtgtttcttgaaa s panTro1.chr19_random 2735286 430 + 57627672 ACTATTCATATTTTAAAGAGTTGATTTATATTGGTTGTTTTTACAAACAGAGCTGCAAACAACAGCGGTGTGCCAACAATTTTTGTGTGTGTGTGTGGGG-------------tttttgtttttgtttt-gagacagagtctcactctgtcgcccaggctggagtgcagtggcaagatctcggctcactgcaacctctgcctcccaggttcaagcaattctcttgcctcagcctcccaggtagctgggattataggcgcctgccaccatgcccggctaatttttgtattttagtagagatgaggttttcccgtgttggccaggctggtctcgaactcctgacctcaagctatccacctgccttggcctcccaaagtgcagggattacaggggtgagccaccgtgcttggccCTCCTTTGTTTCCTTAGATAGTGTTTCTTGAAA a score=36696.0 s hg17.chr17_random 755603 203 + 2618010 tagattcctagaaataaga----tagactgaagagtatgtaaattttaaatttttttacagactgtgtcattgctttttaaaaatgctgattaccaaAATGTCACTTTTTGATACTAAAAAATAGATTGTTTTAAAC-ACACAAAGTAAGTAGGGCTTATCAAAAAGTTAATATAT-TTTGCATTTCTCACAAGTGTGTTGAA-TTTCTC s panTro1.chr19_random 2735716 204 + 57627672 TAGATTCCTAGAAATAAGA----TAGACTGAAGAGTATGTAAATTTTAAATTTTTTTACAGACTGTGTCATTGCTTTTTAAAAATGCTGATTACCAAAATGTCACTTTTTGATACTAAAAAATAGATTGTTTTAAAC-ACACAAAGTAAGTAGGGCTTATCAAAAAGTTAATATAT-TTTGCATTTCTCACAAGTGTGTTGAAATTTCTC s canFam1.chr9 23341402 201 - 53642819 TGGATTCCTAGAAATAAGACAGCTGGACTGAAGAATATGTACTTTAAAAAATTTGATAGGAACTATGTTATTTCTCTTTAAAAACCC----AATCAAAATTCCACTTTTTGATACTAAAAAA---ATAGTTTAAAACAAAATGAAGTAAGTACACCTTATCAAAAAATTAATATACATTTGCATTTCT-ATAAGTATGTTGAA-TTCCTC a score=74814.0 s hg17.chr17_random 755806 348 + 2618010 CCCCTTGCATTGTAC--------AGCAGGAATCCTGACTCAGTCTAACTTTCTTATACTTAAAAAAGTATATACTAAAACATAGGCcaggagttagcaaacgttttctataaaagaccagatagtaaatattgtt--ctttgtgggctatataatctctgttgcaacaatgtgactccacctttgtcttgga-aagctgggatagataatatataaaagagtgggagtggctgtgtttcaacaaaactttgtttacaaaaca-ggggtcatactagatttgttctgaggaccatagtttcttaacctcAGTCTAGGCAATCCATCAAGT----AATTCTGCATTCACGATAGAATTCTTATTGT s panTro1.chr19_random 2735920 348 + 57627672 CCCCTTGCATTGTAC--------AGCAGGAATCCTGACTCAGTCTAACTTTCTTATACTTAAAAAAGTATATACTAAAACATAGGCcaggagttagcaaacgttttctataaaagaccagatagtaaatattgtt--ctttgtgggctatataatctctgttgcaacaatgtgactccacctttgtcttgga-aagctgggatagataatatgtaaaagagtgggagtggctgtgtttcaacaaaactttgtttacaaaaca-ggggtcatactagatttgttctgaggaccatagtttcttaacctcAGTCTAGGCAATCCATCAAGT----AATTCTGCATTCACAATAGAAGTCTTATTGT s rn3.chr10 71745307 339 + 110733352 CTTCTTGCATTTTATATAAAAAAAAAAAGGATCTTGGCTCTGCCTAATTTACTTGAACTTAAAA--------ACCACAATATAGGCCATGCACCCTTAAACTTCTC---------------TGGTAAATGTGTTTAGCTTTGCATTCCATGCAGTCTCTGTTGCAGCTATTCGTCTCTACCTTAGGAGTGAAGAAGCAGTCAAAAATAGCA-ATGAATGAGTGGACATGACCCTGTGTCAACAAAGCTTTACACACAAAACA-GATGCTATGCTGGACTTCTTCTGGGTATTAGAGTTGGTGAGCCCTGATCTGGGTGATTGGTCTCGTAGAAAACTTGGCTGCAACAAAAGCAGTCTTGTTGC s canFam1.chr9 23341603 318 - 53642819 CCTCTTGAATTTTAC--------AACAGACACCCTGGCTTAGTCTACCTTTCTTAAA---------------AACATGACCTAGGGcggaagtcagcaaatttttc-tataaaaggtcagagagtgaatgtttttgactttgtaggc-atacagtctcagttgaaactat-caattctgccacagtggtgggaaagcagccacagacactatgtaatag--------------------aaagaaactttatttacagaacctggcatcatagtggatttgttttgaggactatagctttctaacccTGATCTAGGCAATTAGTCTGATAAATAATTTGGCATTCAAGATAGAAGTATTGTTGA a score=3152.0 s hg17.chr17_random 756154 4 + 2618010 ATAT s panTro1.chr19_random 2736268 4 + 57627672 ATAT s mm5.chr11 83236957 4 + 121648857 ATAC s rn3.chr10 71745646 4 + 110733352 ATAT s canFam1.chr9 23341921 4 - 53642819 ATAT a score=41306.0 s hg17.chr17_random 756158 73 + 2618010 ATTGGCTGACTGTCTTTCCTTTCTCTAATGTTAACCACTGATTT-TGTGGAGCATGGATTCTAGGGAAATAATA s panTro1.chr19_random 2736272 73 + 57627672 ATTGGCTGACTGTCTTTCCTTTCTCTAATGTTAACCACTGATTT-TGTGGAGCATGGATTCTAGGGAAATAATA s mm5.chr11 83236961 69 + 121648857 ATTGGCCAA----TTTTCTTGTTTTTAATATAAACCAATGCTTT-TGTGGAACATCAGTTCTAGGAAAATAATA s rn3.chr10 71746191 69 + 110733352 ATTGGCCAA-----TTTCTTGTTTTTAATGTAAACCATTGATTTCTGTGGAACTTGGATTCTAGGAAAATAATA s canFam1.chr9 23341925 73 - 53642819 ATTGGCTGATTGTTTTTCCCCTCTCTAATGTCAGCCACTGCTTT-TGTGGAGCATAGATTCTAGAAAATGGATA a score=8947.0 s hg17.chr17_random 756231 55 + 2618010 CCCAGGTAAGATGTCTATTACCATGTGTGTCTTATTTTTGAAAGAGTGGTTAAAT s panTro1.chr19_random 2736345 55 + 57627672 CCCAGGTAAGATGTCTATTACCATGTGTGTCTTATTTTTAAAAGAGTGGTTAAAT s canFam1.chr9 23341998 54 - 53642819 TCTAGGTAACATGTCTATTGATACATGCAGCTTACTAAGAAATGAGTGG-TAAAT a score=55767.0 s hg17.chr17_random 756286 597 + 2618010 TCTTATTGAggccgggtgcagtggcttatgcctgtaatcccagcactttgagaggtcgaggcaggcagctctctcaagttcaggagttcaagaccagcctggccaacatggtgaagccccgtctctactaaaaatacaaaaattagctgggtgtggtggcatgcacctgtaatcccagctacttgggaggctgaggcaggaagatcactggaacccgggaggcagaagttacagtgagccggcatggcaccactacactccagcctgggcaacagagcaagactccatctcagaacaagtcaaaacaaaacaaaacaaaCACACAAACAAAAAACtgggagaccgaggtggtcagatcacaaagtcagaagattgagaccagcctggccaatatggtgaaaacccgtctctactaaaaatacaaaaattagccgggtgtggtggcaggcacctgttctcccagctacttgggaggctgaggcagaagaattgcttgaacctgggaggcagagattgcagtgagccaagattatgccactgcactccagcctgggcgacagagcaagactcagtctcaaaaaaaaaaaaaaaaaaaa-----G s panTro1.chr19_random 2736400 602 + 57627672 TCTTATTGAggccgggtgcagtggcttatgcctgtaatcccagcactttgagaggtcgaggcaggcagctctctcaagttcaggagttcaagaccagcctggccaacatggtgaagccccgtctctactaaaaatacaaaaattagctgggtgtggtggcatgcacctgtaatcccagctacttgggaggctgaggcaggaagatcactggaacccgggaggcagaagttacagtgagccggcatggcaccactacactccagcctgggcaacagagcaagactccatctcaaaacaagtcaaaacaaaacaaaacaaaCACACAAACAAAAAACtgggagaccgaggtggtcagatcacaaagtcagaagagtgagaccagcctggccaatatggtgaaaacccgtctctactaaaaatacaaaaattagcggggtgtggtggcaggcacctgttctcccagctacttgggaggctgaggcagaagaattgcttgaacctgggaggcagaggttgcagtgagccaagattatgccactgcactccagcctgggcgacagagcaagactcagtctcaaaaaaaaaaaaaaaaaaaaaaaaaG a score=54562.0 s hg17.chr17_random 756883 287 + 2618010 TCTTATTGACAAGTTCAGTAGTTTCTTGTCTTTAGTCTgcatgtgtatcacttgggggtttggtaaaaatctagattcccgcatccaaaccc----agttctcttgtgagcattttaaatgaccatcccaggtggttcTGGAATGCTCAtaggattgcatattagttacactatttattcgctgcatggccatggacaagttgttttaactctctgagccaacatttcctcttctgttaaatgggaatattaataatacttagcccttggagacactgttagaattTGAAG s panTro1.chr19_random 2737002 287 + 57627672 TCTTATTGACAAGTTCAGTAGTTTCTTGTCTTTAGTCTgcatgtgtatcacttgggggtttggtaaaaatctagattcccgcatccaaaccc----agttctcttgTGAGCATTTTAAATGACCATCCCAGGTGGTTCTGGAATGCTCAtaggattgcatattagttacactatttattcgctgcatggccatggacaagttgttttaactctctgagccaacatttcctcttctattaaatgggaatattaataatacttagcccttggagacactgttagaattTGAAG s canFam1.chr9 23342052 272 - 53642819 CCTTATTGACGAATTCACTGGTTT-TTGTCTTCTGTCTGCATGTAAATCACTTGAGGATTTGGTAAAAGTCTGGGTCTCCAGATCTAAACTCAAGAAATTCTATTGTCAGCATTTTAAACAACCATCCCTGGTGGTTCCAGGGTGCTCTGAGAAATGC-TATCACAGGTTTTatttattagatggttgaccatgggcgagttgttttaactctctgagccaaaattccctcttctgtcaaatggaaa-----------------ccttggtgaaattgttaggatttaaag a score=2246.0 s hg17.chr17_random 757170 11 + 2618010 CACAATGAATA s panTro1.chr19_random 2737289 11 + 57627672 CACAATGAATA s canFam1.chr9 23342527 11 - 53642819 AACAATGCATA a score=3470.0 s hg17.chr17_random 757181 12 + 2618010 ATTTTTAAGAGA s panTro1.chr19_random 2737300 12 + 57627672 ATTTTTAAGAGA s rn3.chr10 71747237 11 + 110733352 ATTCTTACGAA- s canFam1.chr9 23342538 12 - 53642819 ATTCTTAAGAAA a score=14363.0 s hg17.chr17_random 757193 54 + 2618010 GCTTGACTCATGAGAA-------AAATAAGCTTAAATGCATGAATATATATATCAAGCATG s panTro1.chr19_random 2737312 54 + 57627672 GCTTGACTCATGAGAA-------AAATAAGCTTAAATGCATGAATATATATATCAAGCATG s mm5.chr11 83238054 50 + 121648857 GCTGGACTTAGGACAA-----ACAAACAAACATAAACTTATGAAGACG------AAGACTG s rn3.chr10 71747248 61 + 110733352 GCTGGACTTAGGGCAAAACAAACAAACAAACATAAATTCATGACGATGAAGACTGAGCTTG s canFam1.chr9 23342550 49 - 53642819 GCTTGATGCAT--TAA-------AAAAAAACTTAAATGCTTA---GTGTATATGAAGAATG a score=3525.0 s hg17.chr17_random 757247 8 + 2618010 AATTTACC s panTro1.chr19_random 2737366 8 + 57627672 AATTTACC s mm5.chr11 83238104 8 + 121648857 AATTTGTC s rn3.chr10 71747479 8 + 110733352 GATTGACT s canFam1.chr9 23342599 8 - 53642819 AATATGCC a score=175440.0 s hg17.chr17_random 757255 495 + 2618010 TAGTGCATATGCATTATACACTGGGTGCATAATACTTTATAAAATAATCATTGTTTTAAAAAATAGAGTTTCATT--------------ATCTGG--GGAGAGGCATTACCGTCATTTCCTTTCTGCTGACTTCCCCTCTTCAGAGTTTTCTGCTCTTCCCC--TCCCATCCCACCACCTTGCTT--------------TGTCACAAAACAAAGCCAATAGGATCACCAACAGTTTAAGACTGGTTTACTCAAAACGAAT---TCATTG-TTTTACATAGCTGAACACAGAAATGATAAATAATGTTCTATAAATATTTGTTGGTTGACAGCTTTGGAACAATGTCCTCTAGAAAAAGCTGAACGTAGCCACCCACCT-TGTACGAGAGCCGCAAAGAATAGCCATGTGCC-TGAATATGTGTCAGCCGCTGTGTGACTGGAGGGGCTGAGGAAGGGGC-GTAGAGGGTGTTGTGAGGTCCCTTCCGACAAGCAGTCAAGAACGCATAGAAATACATTACAAAAATTAA-ATAG-----A s panTro1.chr19_random 2737374 503 + 57627672 TAGTGCATATGCATTATACACTGGGTGCATAATATTTTATAAAATAATCCTTGTTTTATAAAATAGAGTTTCATT--------------ATTTGG--GGAGAGGCATTACTGTCATTTCCTTTCTGCTGACTTCCCCTCTTCAGAGTTTTCTGCTCTTCCCCCTTCCCATCCCACCACCTTGCTT--------------TGTCACAAAACAAAGCCAATAGGATCACCAACAGTTTAAGACTGGTTTACTCAAAACGAAT---TCATTG-TTTTACGTAGCTGAACACAGAAATGATAAATAATGTTCTGTAAGTATTTGTTGGTTGACAGCTTTGGCACAATGTCCTCTAGAAAAAGCTGAACGTAGCCACCCACCT-TGTACGAGAGCCGCAAAGAATAGCCACGTGCCCTGAATATGTGTCAGCCGCTGTGTGACTGGAGGGGCTGAGGAAGGGGC-GTAGAGGGTGTTGTGAGGTCCCTTCCGACAAGCAGTCAAGAACGCATAGAAATACATTACAAAAATTAA-ATAGTCTAGA s mm5.chr11 83238299 490 + 121648857 TAGTACAAAAACAACATATACTAGGTGTACAATATTCTATAAGATAATCATTGTTTCATAAAGTAATGTTTTATCTG----TTTCAGAAACCTGAATGTAGAGGCACTATGGCCATTTCCTGTA-GATGACT--CTTCCTTCAGATTTTCATGTTCATTTTC--TCTC-CCCCACCATTTTTCCTGCCAGTGGTGCTGACTTTGCAGAACAAAGACAACAGAATTACCAGT--CTTAGGAGAGGGTCATTCAGA--GAATAGGTCATTGACTTCACACATCTGAGTGTGGAGATGATAAAGGACAAGCTATAAATATTTGTTGGATGTCAGCTTTGGAACAAGGTCTTACAGAAAAGGCCAGAC--AATTACTCACCTACATAC----------------------------AGAGTAGGTGTTAACCACTTTGTGATTGTCAGGACTAGGGGAGGCGTGGCACAGACAGTTACAGGAATCTCTTCAGCAAGCAGCTAAGAACACATAGACATGCTTTAGAAAAATCAG-TTAG-----A s rn3.chr10 71747488 464 + 110733352 TAGCACAGAAACATCATATACTAGGTGTATAATATTTTATAAGATAATCACTGCTTCATAAAATGATGTCTCATCTG----TTTCAGAAATCTGAAGCCAGAGGCACTCTGGCCATTTCCTGTT-GGTGACT--CTTCCTTCAGAGTTTCCTGTTCCTTTTTCTTTCCTCACCACCATTTTTCCT--------------ACCAGTGATGCTGACTTCGCAGAGTCACCAGT--CTTAGGAGTGGATCATTCAGA--GAATGGGCTATTG-CCTCACACATCTGAGGA-GGAGATGGTAAAGGACACACTATAAATATTTGTTGGTTGACAGCTTTGGAACAAGGTCTTACAGAAAAGGCC------AATTACTCACCTACATAC----------------------------AGTGTAGGTGTTAACCACTCTGTGA---------CTAGGGGAGGGGTAGAATAGACAGTTACAGGAATCTCTTCAGCAAGCAGCTAAGAACACAAAGAAATGCTTTAGGAAAATCAG-TTAG-----A s canFam1.chr9 23342607 479 - 53642819 TAGTACATATACATTATATGCTAGGTACATAATATTTT-----ATAATCATTGCTTTCTAAAAT---GTTTTATTTTTAACTTTCAAGAATATGTAGATACAAATATTACTGTCATTTCCTTTCTGCTGACTTCACCTCTTCAGATCCTCTTACTCTCTGCC-------CCTAATCATTTTTCTAACCAGAACTT----TGTCACAAAACAAAACCAATTGAATCACC-----CCAAGGACTGGTTTGCTTTTAAGAAAT--TCCATTA-TTTCATGCAGCTGAACATAGAAGTGGTAAATAGCATTCTATAAATATTTGTTGGTTGATGGTTTTGAAACAATTTCCCCTGGAAAAAACTAAACATAAGCATTCATCTACACACT---------------------------TAAGTATGTGTCAACCGCTGAGTGATTGGAGGGGCGCTGG--GGCGTGGTGAAGAGAGTTGCAGGATCTGTCCCTGCAGTCAGTCAAGAATGCATGGAAATATATTACAAACATGAGTATAA-----A a score=7147.0 s hg17.chr17_random 757750 36 + 2618010 TAAGTTGAAATGCATGTTAAGAAGAGCCCCAGAGTG s panTro1.chr19_random 2737877 36 + 57627672 TAAGTTGAAATGCATGTTAAGAAGAGCCCCAGAGTG s canFam1.chr9 23343086 36 - 53642819 TAAATTTAAATTTACATCAAGGAGAAGCCCAGAGTG a score=8520.0 s hg17.chr17_random 757786 31 + 2618010 TGGTTGCTTG-------------GGTAGGGGTAGGTTCAGGAAT s panTro1.chr19_random 2737913 31 + 57627672 TGGTTGCTTG-------------GGTAGGGGTAGGTTCAGGAAT s mm5.chr11 38371552 31 - 121648857 TGGTTGCTTG-------------AGTAGGCTTAAGCTCAAGAAT s canFam1.chr9 23343122 44 - 53642819 TAACTGCTTGACAATCAGCACATAGCACAGATAGCTTCAGGAGT a score=2875.0 s hg17.chr17_random 757817 19 + 2618010 TGAAGGGACGTCCCTAGGG s panTro1.chr19_random 2737944 19 + 57627672 TGAAGGGACGTCCCTAGGG s canFam1.chr9 23343166 19 - 53642819 GGAAGAAGTATTCCCTGGG a score=229903.0 s hg17.chr17_random 757836 794 + 2618010 CCTGGGTCCCTGCCTCCTAATTTG-CCACAAATGTAAC-AGTGTCT--TGTTGCTTCCAGGTCACTCAGGGATTCGACTCTGAG--GTCAGTGATGCACTTGGCACCAGAACTCGATGGGGTTGGCACAGACCTGCCAGCCTCAGCCACTTTCATTCTGGAAGCTGTTAAAA--GAGACAGTTATAAAAATTGAGGAATCAGCAAGAGAATTCCTGGTTCCGTGCTACCTT----CTTCTCTCTGTCTTGGCAA-----GTGTAGGGCCTGTCCACTTGCTCAGGACTCTTTGTCCAACCTCAGCTCCC-TAGACCTTTCATCAGTG-----------GCTCGGGG--TCTCTTCAGGCAGCCTCTTCCGGCTAACACTTCCTCCTGTCTTCCCTCTGTCAGGGGCAGCTCTTCCGTGGTTCCTTGCAGACCCCAGGTCAGGCCAGAAAACACCTCT---ATGGCCCTTCCCTGTGTCCCACCACCAGATAGGACCTCAAAGGCCTGGGGTCCCCAGGATGGCCCTCAAACCGA--CTG-GTGCCCTTG--------------CAGGCTGCCACCCTCCAAGTCCT------------------GCTTCTCTCTAGAGATGGGCAGGAGCACCAGCCCTCACCTG-GCACCAGCAGTGAGTCTCATAA-TTGCCATCTACCATTTTGCTAGGGGGCTTCTGGGGA-------------TCCTAGGAAAAGCAGCAGATGCCTGGGTGCTTGGGGACCTGGGC--ATTCTGAGGGAAGGAGCAGCGTGACCCTGAGTCATTTTTCACTGGGGACAAATGAGCCAACTCC-------TTCTACCCAGTGATAAAATCAGAAGGAA-GCAGATGGAGACAGCACTGTTCAG s panTro1.chr19_random 2737963 785 + 57627672 CCTGGGTCCCTGCTTCCTAATCTG-CCACAAACCTAAC-AGTGTCT--TGTTGCTTCCAGGTCGCTCAGGGATTCGACTCTGAG--GTCAGTGATGCACTTGGCACCAGAACTCGATGGGGT-GGCACAGACCTGCCAGCCTCAGCCACTTTCATTCTGGAAGCTGTTAAAA--GAGAGAGTTATAAAAATTGAGGAATCAGCAAGGGAATTCCTGGTCCC-----------------CTCTCTGTCTTGGCAA-----GCGTAGATCCTGTCCACTTGCTCAGGACTCTTTGTCCAACCTCATCTCCCCTAGACCTTTCATCAGTG-----------GCTCAGGGGATCTCTTCAGGCAGCCTCCTCCGGCTAACACTTCCTCCTGTCTTCCCTCTGTCAGGGGCAGCTCTTCCGTCGTTCCTTGCAGACCCTAGGTCAGGCCAGAAAACACCTCT---ATGGCCCTTCCCTGTGTCCCACCACCGGATAGGACCTCAAAGGCCTGGGGTCCCCAGGATGGCCCTCAAACCGA--CTG-GTGCCCTTG--------------CAGGCTGCCACCCTCCAAGTCCT------------------GCTTCTCTCCAGAGATGGGCAGGAGCACCAGCCCTCACCTGTGCACCAGCAGTGAGTCTCATAAATTGCCATCTACCATTTTGCTAGGGGGCTTCTGGGGA-------------TCCTAGGAAAAGCAGCAGATGCCTGGGTGCTTGGGGACCCAGGC--ATTCTGAGGGAAGGAGCAGCGTGACCCTGAGTCATTTTTCACTGGGGACAAATGAGCCAACTCC-------TTCTACCCAGTGATAAAATCAGAAGGAA-GCAGATGGAGACAGCACTGTTCAG s mm5.chr11 83240482 747 + 121648857 CTTGGGTCTCTGTTCTCTAATCTGCCCATAGATATAACTGGTATTT-CTGTTCTCTCTAAGACTCACAGAAATTCCTTTCTGTGTAGTCCTTGG-----TTGACACCAATGCTAGGGAGAATTGGCACAGACCTATCAGGTTTTG--ACTT-------------------------AGTAGCTTTGAAGACTGAGGAGTAGGCAACAGAATTTCTGGGTTCACCCTTCTCTG--CACCCCATCTGACTTGGGAAGCTAGGCTCAGGGTCATTCTAATT-CTCAGGCCTGACTCCTCAACCTGCCCTCCC-CAGATGTTTCCATGGTGACAGGGGTGGTGCTGATGG--TCTCATAAGCCAGCCTCCTC----------------------TTCCTCTG-CAGAGGCAGCTCCTCCATGACGCTCTGCTGCTCCCAGGGCATG----------CCTCT---CTGGGCACT--------------------------CTCAAAGGTCAGGACTCCCCAAGAGTGACCACAGCCACC--CTGTGGGCCTTTT--------------CAGATT--CTCCTACCAGTTCCT-------CGTGACTTTACATTCCCTTCCAGAGATGGACAGAAAGACTGG-TTTTACCTG-ACACTGCCTATTTCTCTCATGG-TAGTCACTTTCTGACTTGCTAGGGGCCAGCTGAGGG--TGGGAGTGTGTTCACAGAAAAGGCCACAAA--------TTCTTGGAGGTCTGGGCTAATTCTGAGGGAAGGCACAGGCTGAGTCAAAGGGAGTTTTCA-TAGAAACAGACAAGTCACCTCCATA-TTTTTAAAACCAATGATAAAATCAGAGAAAATGTAGACTGAGAGAGTGCTGCCCAG s rn3.chr10 71749953 770 + 110733352 CTTGGGTCTCTGTTTCCTAATCTGCCCATAGATGTAAC-TGTTTTTTTTGTTCTCTCTAAGATTAATAGGAATTTCTTTCTATGTTGTACTCAG-----TTGACACATGTGCCAGGGAGAGTTGGCACAGACCTATCAGTTTTG---ACTT-------------------------CGTAGCTTTGTAGATTGGGGAATAGGCAA-AGAATTTCTGGGTTTATCCTTCTCTG--CACCCCATCTGACTTGGGAAGCTAAGCTCAGGGTCACTCTAATT-CTCAGGGCTGCCTCCTTAACCTGCTGTCCC-TAGATCTTTCCATAGCGACAGTGGTGGTGCTGGTGG--TCTCATAAGTCAGCTTCCTC----------------------TTCCTCTGCCAGAGGCAGCTCCTCCATGATTCCCTGCTGCTCCCAGGACATGACAGGA----CTTCTGGCCTGGCCTTCCTGTGCTTT-----------------TTCAAAGGTCAGGACTCCCCAAGAGTGCCCCCAGCCACC--CTGTGGGCCTTTT--------------CAGAGT--CTCCTATCCATTCCTGATGAGTTTACATTTCCTGCCTCT-TCCAGAGATGGACAGGAAAGCCAT-TTTTACCTG-ACACCACCTCTTTCTTTCATAA-CAATCACCTGCTGACATG-TAGGGGCCAGCTGAGGGAAGGGGGGTTTGTTCACAGAAAAGGCCACAGATG---------TTTGAGGTCTGGGCCAATTCTGAGGGAAGGCTCAGGCTGAGCCCAAGGGAGTTTTCA-TAGATACAAGTGAATCACCTCCATATTTTTTTAAACCAATGAGACGATCAGAAGAAA-GTAGAGGGAGAGAGTGCTGCCCAA s canFam1.chr9 23343185 763 - 53642819 CTCAGGTCCCTGCTCCCTAATCTGCCCACAGATGTAATTGGTTTCT--TGTTGCTTCTAGGTCACTTAGCGATTCAGCCCCATG--GTCAGTAATGGGCTTGGCCCCAGGACTCTGTGGAGCTGGCACAGACCTCCTGTCCT-----GTTT---GGTGGGAAGCTGTGAAGAGGGATGGAATTATAAAAGCTGAGGAGTCAGCAGGAGAATTCCTGGTGCCACATTGCTTCTGCTGACCTCTCTGCCTTGGGAA-----GCTCAGAGTCTGGCTACTTCCTTGGGACTATTTCCCC-ACCTCAGATTCC-TAGACTTTTCCTCAATG-----------ACTGAGGGAGTCTCTTCAGGAAGTCTCTGC-------------------------------CTGGGGCAGTTTTCCCCTGGCTCC---CAAATCCTAGGCCAGGTTATAGAACACCCCC---ATGGCTTCTCCTCATGTCCTGCCACTGAATAGGACCTTGAGGCTCTGGATTTCCTAGAATGGCTCTCATCCACCTGCTG-ATGCCTTTGAACCCAAAGTCCTACTGGCTCCATTCTGGCATGTCCT------------------GCCTCTCC-------TGGACAAGAGGACCAGCCATTATGTG-GCTCTGGCTACTGGTCTTCTAA-TAGACATCTACCATTTTGCTAGGGATCTGCTGGGGG-------------ACATAGAAAAAGCAGCAGA--------TCCTTGGGGGCCTTTGTCTACTCTAAGGAAAGGAGCTGCCTGAGCCTGAATCATTTTTCA-TCAGAATAAGTGAGCCAGCTCC-------TTCTGCCCAATGATAAAGTCAGAAGAAA-GAAGATGGAGATAGCATTGTTCAG a score=16371.0 s hg17.chr17_random 758630 105 + 2618010 GGGATGATTTGGGGATGAGAAGAACTGGCAGGAAGTTGGGGATGTGGGGGTGAGAAGAACCAGCAGGAAGTTGGGGATTTCTTGTTTCCCCACTTTTCCCTTCCA s panTro1.chr19_random 2738748 105 + 57627672 GGGATGATTTGGGGGTGAGAAGAACTGGCAGGAAGTTGGGGATTTGGGGGTGAGAAGAACCAGCAGGAAGTTGGGGATTTCTTGTTTCCCCACTTTTCCCTTCCA s mm5.chr11 83241229 68 + 121648857 GGGTC--CTTACCCCTGCGGAGAACTGGAAAGCAGTTGGAGATT-------------------------------GTTTTTCAGTCATCCTGC----CCCTTCCA s rn3.chr10 71750723 68 + 110733352 GGGTC--CTTACTCCTGGGGAGAACTGGAAAGCAGTTGGAGATT-------------------------------GCTCTTCAGTCATCCTGC----CCCTTCCA a score=420945.0 s hg17.chr17_random 758735 1233 + 2618010 TTTCTGTTTGAGCCTTAGGTTTGGCCTCCGTCTCCCTCTGTAGGAATTGCAGCTAATTAAATATTCTGCCTCTTATTCCAGCTTTACTGGTGG-AACATAATATGGTCTAAGAAGAGATTTTTGCAGCAAGAGGCCATCTCTGCAAAT--CACCTGTGAGGCAGACCTGTGGCAATTTTATGACTCAGCTGGCCACCGG-----GATTGTAGCTGGGTTCTGCCGCTTGTTGAA-ACCTACTCAGTGTTCTCCTTCCCTAAGTAGGACAAGACCATATCCTGCCTTTAAGATTTAT-AGAATAAAAACTGAAAACTCTTTGGGGAAGAAAATCTTCCCGAAC---------AGATAGCCCAGGGCATTTTGAAAATCCCTTAGGAAGTTCTCTGTTTCACTTGGGTACCTTTGTCCTTGGACTTTGGTGATGTGGTTTGACCCCAGCTAGAGAGTGAGGGGAACAACAGCAAAAGGCAGGACAAAGACTGACTCGTGAGAGGAGGCCCAGGAACAGGG--GGGCCATTGTGAATGAGGAGGACGTGGGGG-CCCAAGAAAGTGAG-CT-------------CTTGCGCACTCAGTCACCAGCCCCCTTCTGGGGTCCAAGCTGTGTCCCCTTCTCTAAAGAGGTAAGCCCTGAGTCATGGGAA---GATGGAAACCGGGG---------------------CTGATGAGACAGGATGTTTTTTAAGCACCGTGGTGTCTTGTTGACTTGCACATGCACG-GGGGTCTTGGGTAACCACAGGGCTCAGGGTATTTGCAGGAACAGTT-CAAGTGCTCACTTGTCTTGGGGCTGTTTATGGGGAAGTGGTTTCCACAGTGAGAGGACGTGAGATATTGTTGTCACCCCGGA-CCACACTTAGCTACTTCCTTCTCACTAAAGCTCTGTAGTCATATTTTCCC-TGGCAGAGCAGAAACTTCTATGTTATCCCACAGCTGTTCTAACGGTGTAGACTTGACTTATGCAATGATGCCAGGAGTCCTGAGCAGC-ACAGCCCAACTTCAATCACACA---------------------------------------------------------------------CAGATGGACAGAGCTGTATTAGCAA-AGCCTGAGCTACTG-AGCGA-TGA-GAGTACAGCCAGGCTTTCAGACATCTGTTCATTCAAGAGAGAT----------------ATGCGCTAAGCCAAGGACCTAAAGATGTGTTTAATATGGGTGCTaa-----------tatgcataaggaaccttgaaataaatgttcttagcctttggccaagagggtccatgtctaggaatctat-------------------tctccatagaaataaattcaa-------------------atatggaaaaaat------------gaaca-at s panTro1.chr19_random 2738853 1252 + 57627672 TTTCTGTTTGAGCCTTAGGTTTGGCCTCCATCTCCCTCTGTAGAAATTGCAGCTAATTAAATATTCTGCCTCTTATTCCAGCTTTACTGGGGGGAACATAATATGGTCTAAGAAGAGATTTTTCCAGCAAGAGGCCATCTCTGCAAAT--CACCTGTGAGGCAGACCTGTGGCAATTTTATGACTCAGCTGGACACCGG-----GATTGTAGCTGGGTTCTGCCCCTTATTGAA-ACCTACTCAATGTTCTCCTTCCCTAAGTAGGACAAGACCGTACCCTGCCTTTAAGGTTTAT-AGAATAGAAAGTGAAAACACTTTGGGGAAGAAAATCTTCCTGAAC---------TGATAGCCCAGGGCATTTTGAAAATCCCTTAGGAAGTTCTCTGTTTCACTTGGGTACCTTTGTCCTTGGACTTTGGTGATGTGGTTTGACCCCAGCTAGAGAGTGCAGGGAACAACAGCAAAAGGCAGGACAAAGACAGACTCGTGAGAGGAGGCCTAGGAACAGGG--GGGCCATTGTGAATGAGGAGGACGTGGGGGGCCCAAGAAAGTGAG-CAAAAGAGGACAGGGCTTGCGCACTCAGTCACCAGCCCCCTTCTGGGGTCCAAGCTGTGTCCCCTTCTCTAAAGAGGTAAGCCCTGAGTCATGGGAA---GATGGAAACCGGGG--------------------GCTGATGAGACAGGATGTTTTTTAAGCACCGTGGTATCTTGTTGACTTGCACATGCAAG-GGGGTCTTGGGTAACCACAGGGCTCAGGGTATTTGCAGGAACAGTTTCAAGTGCTCACTTGTCTTGGGGCTGTTTATGGGGAAGTGGTTTCCACAGTGAGAGGAGGTGAGATATTGTTGTCACCCTGGA-CCACACTTAGCTACTTCCTTCTCACTAAAGCTCTGTAGTCATATTTTCCCCTGGCAGAGCAGAAACTTCTATGTTATCCCACAGCTGTTCTAACGGTGTAGACTTGACTTATGCAATGATGCCAGAAGTCCTGAGCAGC-ACAGCCCAACTTCAATCACACA---------------------------------------------------------------------CAGATGGACAGAGCTGTATTAGCAA-AGCCTGAGCTACTG-AGCGA-TGAAGAGTACAGCCAGGCTTTCAGACATCTGTTCATTCAAGAGAGAT----------------ATGCGCTAAGCAAAGGACCTAAAGATGTGTTTAATGTGGGTGCTaa-----------tgtgcataaggaaccttgaaataaatgttcttagcctttggccaagagggtccatgtctaggaatctat-------------------tctctgtagaaataaattcaa-------------------atatggaaaaaat------------gaaca-at s mm5.chr11 83241297 1284 + 121648857 TTTCTTTTTCTACTTTACAGTTGGCCACTATCTCCCCCTGCAGGAAATGCCACTTAGTGACTAGTCTGTCTCTTGTTCCTGCTCTACTGAGG--AACTCTAGTCAGTCTAAGAC-------------------ACCAACCCTGCTGCT--CACCTGTGACACAGA-CTGGGGGACCTTCAGCGCTAGGATGGCTGCTGG-AAGCAAGTGTTGTAGGATTCTACCTCTTGTTGAA-ACATGTTCAGTTTCCCCGTTTCCCAAATAGGAGAGGACTCAACCCTTCTTCTGAACTATATAAAAATAGGAAGCTAA----------GGAGCACCCCCCCCCCACACACACACACAACATAGCTTAAGGCATATTGAAAATCCCTTGTGAAGT----TGTTTCACGTGGTTACTTTTGTCTGCAGTATTTGGTGATGTATTCTGAC----------AAGAGACAAGAACCACAAT-----------CGAAAACAGACTC----AAGCAGGTCCAGGAACAAAGATGGGGCA-----AGGGAGGAGAATAGCTAGGGTCTCAGAGTGTGGG-CAGAATGAGATGGGGCCCAGGCACTCACTTGCCAGCATCCTTCATGGGGCCAAGCTACAT--CTTAGTCTTAGTATGTAGACCCTGGGCTGTGGGGA---GGTGGGAACTGGTGGTGGTGGTGGTGGGGGGGGAGTTGACTGGAGAGGAAGTATTT--AGTACAGCTGTGTCCTGTTGACTGGTACATGCAAGAGGGGTCTTGGGTAACCACGGGGCTCAGCATATCCGCAAGAATAGGT-CAGGTGCTCTCTCAGCTC-GGGCTGTTTACAGGGAAGTGGTTTCTACAGCACGAGTTGCTGAAATGGTAGTGTCATCCTAGAGTCACACTTCGAGGGCTCCTTCTCAC----------TAGTCATGGTTTCCT-CTACAAAGCAGAAACTTCTGATCTATTCCACAGCTGTTCTAATTATACAGATGTGAA-TAAATGAAGCTGCCACAACTCTTGGACGGTGAAAACCCAAATGATTTCACCCAGGGCCT------------------------CTGGAGTGTGGGCAGACACTCAGTTGCCAGAG---TCCTTAGACGATTAGAGCAGTACCAGCAACGGGCTCAGCGAGCA-AGCGA-GGA-GCGTACAATCAGCCTTCGAGAC-CCCGTTTCTTCCTGAGAGATTCTTCAGG------AAGTACACTAGTCAAATGGCACTAAGGCACATCAGATATGGGAGCTAAGTATAACGGGCTAAGCCTAACTAATCTGA----AAATGTTGTTAGCCTTTGAACAAGGAAGTTTGTACCTAAGAATTTAT-------------------TTCCTATCCAGAAAAATCCAATCCCTCCCAGGGGGGTAGCATTAGGGGAGGGT------------GGTGA-GG s rn3.chr10 71750791 1288 + 110733352 TTTCCTCTTCTACTTTACCGTTGGCCACTACCTCCCCCTGCAGGAAATGCCACTAAGTGAATAGTCTGTCTCTTGTTTCAGCTCTACTGAGG--AACTCCAGTCAGTCTAAGAG-------------------ACCAACCCTTCGGAT--CACCTGTGACACAGA-CTGAGGGAACTTCAGTACTCGGATGGCCACTGGGAAGCAAGTGTGGTAGGATTCTACCTCTGGATGAA-ACATCTTCAGTTCCCCCGTTTCCCAAATAG---AAGACTCAACCCTTCTTCTGAGCTATATAAAGACAAGAAGCTAA----------GGAA----CTCCCCCCCCAC-CACACACACCAAAGCCTAAGGCATATTGAAAATCCCTTGTGAAGT----TGTTTCACGTGGTTACTTTTGTCTGCAGTATTTGGTGATGTCGCCTGACAAAAGCTAGAGAAT----AGAACCATGAT------TGGATAGAAGAGAGACTCGCATGAGCAGGTCCAGGTACAGAGATGGGG----GTGAGGGAGGAGAAGAGCGAGGGTCTCAGAGTGTGGG-CAGAATGAGGTGGGAC-AGGGCACTCACTTGCCAGTATCCTTTGTGAGGCCAAGCTACATCTTGGTCTCTTAGTATGTAGACTCTGGGCTGTGAGAAACTGACGGAGGGGGGTG--------------------GGTAATTGGAGAGGAAGTATTTT-AGCACAGCTGTGTCCTGTTGACTGGTACATGCAAGAGGGGTCTTGGGTAACCACGGGGCTCTGCATACCCGCAAGAATAGGT-CAGGTGCTCTCTCAGCTC-GGGTTGTTTACAGGGAAGTGGTTTCCACAGTATGAGTTGGTGAAATGGCAGTGTCATCCTAGAATCACACTTCGAGGGCTCCTTCTCAC----------TCGTCATGGTTTCCC-CTACAGAGCAGATGCTTCTGTCCTATTCCACAGCCGTTCTAGCCACACAGGTGTGAA-TAAACAAAGCTACCACAACTCTTGGACAGC-ATAACCCAGATGATTTCACCCAGGGCCTCAGAGTGAGGGCATGAGTTGGGGCCTG-----------GGCACTCAGCCGCCAGAATCCTCCTTGGAGGATTAGAGCAGAACCAGCAAAGGGCTGAGTGAG-------------GAGCACAGCCAGCCTTTCAGAC-CCTGATCCTTCCTGAGAGAGTCTTCAGGAG-CCAAAGTACACTAGTCAAATGCCATTAAGGCCTATCAGCTATGGGAGCTGAGCATAACTGGCTAAGCCTAACTAATCTGA----AAATGTTCTTAGCCTTTGAACAATGAATTCTGTACCTAAGGATTTAT-------------------TTCCTACCCAGAAAAATCCAATTCCTCCCCAGTGCGGGG-GTGGGGTGTGGGA------------GGTCATCT s canFam1.chr9 23344954 1215 - 53642819 -TTTTTGTCTAGTCTTAAGTTTGGTCTCTACCTCCCTCTGCAGGGAATGCAGGTAATGGAACAGTCTGGTGCTCGTTCCAGTGTTACTGGGG--AA-------------AATAAGAAATTTTTCCAGCAAGAGACTGCCTCTGCAAATACCACCTATAAGGTGGTACTGGGGTCGGTTTGTTACTCAGTTGATCCCTGGGAAGCCATTGAAACTGGATTCTGCCTCTTGTTGAACACCTACTCAGTTTTACCCTTCTCAAAATAAGACAAGTCCCCATCATGCCCTCCAGATACAT-AGACTAGAATGCTATAACTCCTTTGGAAAGAATAGCCATCTGAAC---------AGATAATGCATGGCATTTTGAAAACCTCTTGTGAAGCTCTCTATTTCACTTGGGTA------TCATAGGACTTTGGCGTTGTGGTCTGACCCCAGC---AGAGAATGGACAACAATAGGAAATGGCAGG--------AGACTCCTGAAAGGTAGCCTCAGAACAGA---GGGCCGT----GGTGAGGAGGATAGTGGAGGCCCAAGAGGGTGGGCCAGAATGAG-------------ACT-------CAACTTTCTTTTGGGGTCC---------CCTATTCTTTCAACATGTAAGCTCTGGACCTTGGGGA---GATGGAAACTTAGG---------------------GTGATGAGAGAGGAAGTTTTTA-AGCACAGTGTTGTCTTGTTGCCTTGTACATACAAGAGGGGTCTTGGGTAACCACAAGGCTCAGGGTATTTGCAAGAAGGGTT-CAAGTGTTCAATTGACAA-GGGCTGTTTATGGGGAAGTGGTTTCCACAGTAAGAGGAGGTGAGATGTTGGTGTCATCCCAGGACCACATTTAGCTGGGTCCTTTTCATTAGAGCTCTGTAGTCATAGTTTCCCCCAGCAAGGCAGAAACTTCTGTGTGATTCCATAGCTGTTCTTACTG-ATAGGCGTGAC--ATGCAACAATGCCATGAATATTGACCAGC-ACACC--------------------------------------------------------------------------------------CGGGCAGAAAGAGCTGTATTAGCAA-AGCCTGGGCTTCAGAAGCAATTGA-ACATGCAGGCAGTCTTTCAGAC-ACTGCTCATTCTAGAGAGATTCATCGAGGGCCCAAAATGTACAAGGCAAACAGCATAAGGACATGTTGGACATGGGCACTGA-----------GGCACATAAAGAACCTTA----AAATGACCTTTGCCTTTGACCTTGATAATCTATGGCTCAGAATGAATTATCCTATGTAGACGATCCTTCCTATGTAGATGAATTCAA-------------------ATATGGAAAGAATATTTATACATTAGAACA-TT a score=94070.0 s hg17.chr17_random 759968 285 + 2618010 gcataagtgta----tttggtccccagcatatttatagccacttaaaattggacccaatttaaat-gcctatgatatggaaatggctaagaaaattatgggctcttcccttaattggctattaggcagcctttacaaacaatgcagtgacatgagaaatgcttatgttatg---gtaagtttaa--aaaac---tcaagatgcaaaTCAGCTTATTTTAATCAGGAGCCACCTAGC----ATTTGG-GATGTGGTCAATCCCACATAATGTATTTTTG-------------------------------------------------------TGGGTGCAGTTCCCAGGAAAGAAGA s panTro1.chr19_random 2740105 285 + 57627672 gcataagtgta----tttggtccccagcatatttatagcaacttaaaattggaccaaatttaaat-gcctatgatatggaaattgctgagaaaattatgggctcttcccttaattggctattaggcagcctttacaaacaatgcaatgacatgagaaatgcttatgttatg---gtaagcttaa--aaaac---tcaagatgcaaaTCAGCTTATTTTAATCAGGAGCCACCTAGC----ATTTGG-GATGTGGTCAATCCCACATAATGTATTTTTG-------------------------------------------------------TGGGTGCAGTTCCCAGGAAAGAGGA s mm5.chr11 83242581 313 + 121648857 TCATATGCACACACGTTTCATCTCCAGGAAATTTACATCAATTTTTAATTGGATGTAATTTAGTC-ATCTATG---TAGAAA---------------------CATCCCTT---------------AGTCTTTACAAATGGTGTGATGACATGAGAAACGTTTACATCATGAGAATACATTTGA--AAACC---CCGAAATGCAAATTAGCTCATTTTAAGCAAGACCTACCCAGCCAAGCTCTGACGATCTGATGAATCTTACACAATATTTTTTTAAATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGATGCTGCTTCCAGAAAAGGGGA s rn3.chr10 71752079 225 + 110733352 GCACACGCGTG----TTTGATCTCCAGTACATTTACATCAGTTTAAAATCGGGTGTAACTTAAATCACCTAGCATGTAGAAA---------------------CATTTCTT---------------AGTCTTTACAAACGGTGTAATGACATGAGAAATGTTTACATTATT-AAATACATTTGA--AAAGC---CCGAAATGCAAATTGGCTCATTTTAAGCAAGACCTACATGAT----CTTTTT------------------------TATTTTTA-----------------------------------------------------------TGCTGTTCCTAGAAAAGGGGA s canFam1.chr9 23346940 291 - 53642819 AAAAAAGAACA----TTTGGTCTCCACCATATTGATAGCAATTTAAATTTGGACCCAATTTAAATCACCTACAGTATGGAAATAATAAGAAAAGTCATGGTATCTTCACTTGATTTGTTGTTAGGGAGGCTTTACAAACCATGCAATGTCATGGGAAATGCTTATGTTATG---ATAAGTTAAAACAAAACAAAACAAAATGTAAGTTGCCTTATTTTAATCAGGACCCACTCGGT----ATGTGGGGATGTGGTCAACTCCATGTGATAT-TTTTTG-------------------------------------------------------CAATTGCTGTTCCCAGAAAGGAAGG a score=388.0 s hg17.chr17_random 760253 54 + 2618010 GGAATA----AAAACGGCAAGTATGAAGTGTCTCCT-TCGCTTGCAGTCTCCTTGTCTA s panTro1.chr19_random 2740390 54 + 57627672 GGAATA----AAAACGGCAAGTATGAAGTGTCTCCT-TCACTTGCAGTCTCTTTGTCTA s mm5.chr11 83242894 17 + 121648857 -------------------------------CTCCT-AAGCTGATGGGT---------- s canFam1.chr9 23347231 44 - 53642819 AGAATAGAAGAAAGGAGTAAGTATGAGGTATCTCCCGTCATCTG--------------- a score=306038.0 s hg17.chr17_random 760307 1008 + 2618010 CCCCTTTGTCCATCCACTATGAAAGGACTCCCTTCTGTTCCTTAATATGGACAATTTc--tattgaggactcattgttctaagaattgtctcat---ctcctcctgcatcctcagtGCCCGATCTTTGGCTTCTATGAAGGAAGGTGGGTAGTGCGTATGGCAGGTCCAGTTCTACCTTTCTTAGTATGTTCTGGCGTGGGTATGTAGCCCCA-TTTTCTAGTGGTTACCTTGACATCATGAAGAGT--TTATGTCTCTTTTGCCCTAGGTTTGGGCAATAGTCATTCACTGTGCAACAGGAAATACACGAGTCAGCATCTTATTAAAAATAAAGTCATTCAGGAAAGTGGACGAC----AGTTTCTAATCTAGAGAGCATAGGAGAAGAAATGTTTACCACACACAAAGTATTAGTGCCTTTTATATCACGAAGACAAAAATAACAGGAAAAAGACAAACACATTATAGTGAAAACTTGTTTTTCCTAACCAGCATCTATTCTGCATGTTTCCTGATGC-CCGAAACTCACATTTCCTCAGGAAAATCTCCCTTCTGCACCATTCTCAGGCTTTAAGTTTATGTAAAATTCAGTAAACCCAAAGATTCAAGTTATGTGCCTTGATTAACTTAAGCAAATCAATGAAACCCATCCCCATAACCACAGCGACAGGTTAGGAAATTCGGTTCCTAAGTCA-------GTCACATCCGAAAGGGCCTAGTGATGTTTTTTTC------------------------------------CAGTGGGATCACAGACTCACTCTTCCTTGCAGA-AAATGAACAAAGGATTCATGTAACACTGGCAGGTACTGGCAGCCACCCAGGGCCTCTCACAGGAAAGGGAGATCAGAAAGAGAAGCAAAGAGGACTCATGAGATACCATAGGGCTGCTGCGTCCAGCCTTGCCTGGAGCTAGGGCCACCTCGATGCCCTATAGTCTTGGAGCCACAACGTGCATTTACTCAAAGCCTCTTTGAGTTTGGTTTGCTTGTTTGCTTTCTGCCTGGAAACTGCCAGCATCCTGAGAGAT s panTro1.chr19_random 2740444 1011 + 57627672 CCCCTTTGTCCATCCACTATGAAAGGACTCCCTTCTGTTCCTTAATATGGACAATTTC--TATTGAGGACTCATTGTTCTAAGAATTGTCTCAT---CTCCTCCTGCATCCTCAGTGCCCAATCTTTGGCTTCTATGAAGGAAGGTGGGTAGTGCTTATGGCAGGGCCAGTTCTACCTTTCTTAGTATGTTCTGGCGTGGGTATGTAGCCCCA-TTTTCTAGTGGTTACCTTGACATCATGAAGAGT--TTATGTCTCTTTTGCCCTAGGTTTGGGCAATAGTCATTCACTGTGCAACAGGAAATACACGAGTCAGCATCTTATTAAAAATAAAGTCACTCAGGAAAGTGGACGACTAATAGTTTCTAATCTAGAGAGCATAGGAGAAGAAATGTTTACCACACACAAAGTATTAGTGCCTTTTATATCACGAAGACAAAAATAACAGGAAAAAGACAAACACATtatagtgaaaacttgtttttcctaaccagcatctattctgcatgtttcctgatgc-cagaaactcacatttcctcaggaaaatctcccttctgcaccattctcaggctttaagtttatgtaaaattcagtaaacccaaagattcaagttatgtgccttgattaacttaagcaaatcaatgaaacccatccccataaccacagcgactggttaggaaATTCGGCTCCTAAGTCA-------GTCAAATCCGAAAGGGCCTAGTGATGTTTTTT-C------------------------------------CAGTGGGATCACAGACTCACTCTTCCTTGCAGA-AAATGAACAAAGGATTCATGTAACACTGGCAGGTACTGGCAGCCACCCAGGGCCTCTCACAGGAAAGGGAGATCAGAAAGAGAAGCAAAGAGGACTCATGAGATACCATAGGGCTGCTGCGTCCAGCCTTGCTTGGAGCTAGGGCCACCTCGATGCCCTATAGTCTTGGAGCCACAAGGTGCATTTACTCAAAGCCTCTTTGAGTTTGGTTTGCTTGTTTGCTTTCTGCCTGGAAACTGCCAGCATCCTGAGAGAT s mm5.chr11 83242911 878 + 121648857 CCCATCTGTGTGTTCACTACTGAAGGATTCCCCTGTGTTCCTCAATATGGCCACTCTT--TACCAGTGATTCACTGTTTTA--CATTCTCTC-----CCTCTCCCAACCCCCCATTG--------------TCTGCCAGTGGAGGTGGGTGGTGTGGGTAACAGA-CTGGCTCTGCC-CCCTGCATGGGTTCCACTGTGGGTGTGTAGTTCCATTTTTCTGGTGGTTACTTCAACACGGTAAAGAGTAGTAATGTCTATTTAGTGTCAGATTTGGAAGATAGTTCTGTATGGTGCAACAGGAAGTACACAAGTCGACACCT--CCAAGATAAAGGGCCCTCAG----ATGGCTGAA----CTTTTCTAATCTACAGAGCAAAGGAGAAGAAATACACATCACATACAAAATGTGAATGCCCTTCATATACCAACAAAGAAAATCA---------------------ATAGCCCACACCT------------CAG--TCTATGCTACATCCCTCCCCAAATACAGAAGCCTGTATTTCCTTTGGGCTATCAGCCTTCCTTGCATTTCTCCAACTTTAAATTGATATGCAGTTATGTAGACA-------------TATGTACCTTGATTTATCTAAGAGAAT-AGCAAAACCCATCACCAGTAC--------TTTGTTAGGAAA------------------------TCAAATTTAGAAGAATGCAAAGATTTTTTTTCCT-----------------------------CAACAACAACAACAACAACATCACACTCTTCCCTGAACATATACAAGAAAAGGACTCATGGACCTGTGGTAGGCACTGGCAGCCTCTCTGG--------------AAGCACATCTGAGGAAGATGT------GATTCTTG--------CTGGGCAGCAACATCT-TCGTTACCTAGGGCCATGGCCCACTTTGTACCTGACAGT----------CAGGGTTCATTAGCTCAAG---CCTCTGATTTAGGTTGGATTGATTGGCTTCCTCCTTAAAACAGCTAACAGCCTGAGAAAT s rn3.chr10 71752324 902 + 110733352 CCCATTTGTGTGTTCACTTCTAAAGGA-TCCCCTGTGTTCCTCAATATGGGCACTCTT--TACCAGTGACTCATTGTTTTA--AGTTCTCTC-----CCTTCCCCCAAGCCCCACTG--------------ACTGCTACTGGAGTTGGGTGGTGCTGGTGACACA-CCGGCTCTGCC-CTCTGCATGGGTTCCAGAGTGGGTGTGTAGTTCCATTTTTCTGGTGGTTCCGTCAACACAGTAAAGAGTAGTAATGTCTATTTAGTGTCAGATTTGGAAGATAGTCCTTTATGGGGCAACAGGAAGTACACAAGTCAACACCT--CCAAGATAAAGGGCCCCCCG----GTGCCTGAA----CTTTTCTAATCTACAGAGCAAGGGGGAAGAAAAACACATCAAATACAAACTATGAATGCCCTTCATATGCCTCCAAAGAAAATCA----------ACAATAGC--------CCACACCT------------CAG--TCTATGCTACATCCCTCCCCAAATACAGAAGCCTGTATTTCCTTTGGGATATTAGCCTTCCTTGTCCTTCTGCAACTTTAAATTAATATGCAATTATGTAGACA-------------TAGGTACCTTGATTAACCTAAGAGAAT-AGCAAAACCCACCACCAGTAA--------TTGGTTAGGAAG------------------------TCAAATTTAAAAGAATGTAAAGGGTTTTTTCCCTCAACAACAACAAAACAACAACAACAACAACAACAACAACAACAACAACAACACACTCTTCCCTGAGCACAAACAAGAGAAGGACTCATGGAACTGTGGTAGGGACTGGCAGTCTTTCTGG--------------AAACACATCTGAGGGAGATGT------GCTTCTAG--------TTGGGCAGCTGTATCTGG----GACCTGGGCCATGACCCACTCTGTACCTGACAGT----------TGAGGTCCATTAGCTCAAG---CTTCTGATTTAGGTTGGA----TTGGCTTCCTCCTTAAAACAGCTAACACCTTGAGAAAC s canFam1.chr9 23347275 953 - 53642819 TGCTTTTGTCCATCTAATATTAAAGTACTCTCTTCTCTTCCTCACTACAGGCAAGCTCAGTAATGTTAGCTCATTTTTCAGGGAGTTTGCTCATTTCCCTGTCCTCAGGCTTCTGTT--------------TCTATGAAGCAGGGTTGGTGGTGCCTGTGGTAGGGCCAGTTCTACCCCACTTAGTATGTCCTAGAGTGGACATAGAGCCTTA-GTTTTTGGTGGTTGTTTTGGCATCGTGAAGAGC-TTAATGTCTCTTTAGCCTCAGATTTGAGCAATAGCCAATTACAAGGCAACAGGAAGTACACAAGTCAACATGCTTTTACAAATAAAGTCATTCAAGAAGATGGAAGACTAACGGTTTCTAACCCAGAGACCAAAGGAGATGAAGCATTTATCACCTACAAAGAGTTAGTGCCTTTTAGATAATAGGAAAAAAGTCCACTGGAAAAGGACA----TATTACagtgaacatgtgtttttgctgaccag-----------catccctcctgatac-cagaaacctacgtttcctctgggaagccacacttaagcctaattctcagactttaagattatgtgacactcatgcacttcacagatcca---ggaatgcgttgattggcttaaacaaatcaatggaacacaaccctagagccacagtgattgatta-caaattgggtttctgacttaaggatgggtcaaatgggaaagaacctagtgattttCTT---------------------------------------CAATGGGAACACAGAC-------------------AATGAGC-AAGGATTCATGTAATGCTGGGAGGTACAAGCAGCCATCCTGG-GATCCGACATGGATGGGAGGTCAGGGAAGAAAAT----AGGACCTGAGGGATACCGTAGGGCTGCCACATGCAGCCTTGCCTGGAGCCA-----------GTGCCCTTTAGTCTTGGGGTCACAAAGCTCATTTATTCAAG-CCTCTTTGAATTAGATTAGTTTGCTCGCTTACTCCCTTCAAACTATCGGCATCCTGAGAAAT a score=67843.0 s hg17.chr17_random 761315 401 + 2618010 -ACGAGATCTGCATCTGTGCAGAGACACAGGGTTTGTTAAAAGTCACAGGCCCTGACTGAAGTGTGGAACTGGCTGAAATGAGAAAGT----GGTAATTTGGGGAGGACCTTGTGAAATGGAAGGAGt-tttaaaccttacatgcatc---agaattacctggagccttgtgaaaacacaggttgctgggccctagtccattaagaaaggaagtggg---gcttagaatgttcatttctcccatgttcccaggtgatattcaccatgctgtcctgtctgggcactaccttttgCCATAC-CCATTACAAGGTATTGCACGTGCTGGTTGAACTATGGTCTGTCTTATTTTGGTGCTAAAAGCCTGTGCCAAATACCAACGCTGCAGCATTAAGGAATGTGATAGAAAAGATTCT s panTro1.chr19_random 2741455 405 + 57627672 -ATGAGATCTGTATCTGTGCAGAGACACAGGGTTTGTTAAAAGTCACAGGCCCTGACTGAAGTGTGGAACTGGCTGAAATGAGAAAGTAAGAGGTAATTTGGGGAGGACCTTGTGAAATGGAAGGAGt-tttaaaccttacatgcatc---agaattacctggagccttgtgaaaacacaggttgctgggccctagtccattaagaaaggaagtggg---gcttagaatgttcatttctcccaagttcccaggtgatattcaccatgctgtcctgtctggacactaccttttgCCATAC-CCATTACAAGGTATTGCACGTGCTGGTTGAACTATGGTCTGTCTTATTTTGGTGCTAAAAGCCTGTGCCAAATACCAACGCTGCAGCATTAAGGAATATGATAGAAAAGATTCT s canFam1.chr9 23348228 396 - 53642819 GCAGAGACCTATGTCTGTGCAGAGATTGAGAGTCTTTTAACAGTCACAGCCCCTAACTGAAGTGTGGGATCGACTGAACTGAACAAGTAGGAGGATATTTGCCAAGGATCTCATTAAATGGAagtggcatttaaattttgtgtgcattgtgaaaat--------gccttgtgaaa--atagattgctgggctccaccctctaaagggaggagaaggggctgcttaggacttgtatttttaatatgttcccaggtgatatt---catgctgt--tttctgagcaccaccttttgagaaccacCCCTACGTGGTATTGC---TACTGGTTGAACTGAGCCCTATCGTCTCTTGGTGCTAAGACTGTGTGCCAAATACTAAGTCTGCAACAGTGAGGAGTTTGATAGGAAAGCATCT a score=91.0 s hg17.chr17_random 761315 1 + 2618010 A s rn3.chr10 71753226 1 + 110733352 A a score=29241.0 s hg17.chr17_random 761716 320 + 2618010 GAATATAggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacgaggtcaggagatcaagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtagtggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggcggaacttgcactgggctgagatcgcgctactgcactccactccagcctgggcgacagagcaagacttcgtctcaaaaaagaaaaaaaaaaaagaaGATTC s panTro1.chr19_random 2741860 317 + 57627672 GAATATAggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggccgaggcaggcagatcacaaggtcaggagatcaagaccatcctggctaacgtggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtagtggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggcggaacttgcactgagctgagatcgcgctactgcactccactccagcctgggtgacagagcaagacttcatctcaaaaaa---aaaaaaaaaagaaGATTC a score=39548.0 s hg17.chr17_random 762036 243 + 2618010 TGAATATTGGAACTTAGTAGCTATGTATTA----CATCAGTAAGGTCCTTTAAGAAAGAGTTTAGGCTGCTTTGAAATGGGCTCATCTGAAATTGAAAAAGGAAGA-AATTGAAC-TTGCTAAAAAAGGCCCTTCCAACTTATTGACTGAGAACCCAGTAATCTGGAGACTTGAAGGGCTGTAATGGCAGAATTTTCTACTCTAAGATAAAGTTAGCATGAGCAGAGACAGGAAGATGAGAGACCTAAT s panTro1.chr19_random 2742177 239 + 57627672 TGAATATTGGAACTTAGTAGCTATGTATTA----CATCAGTAAGGTCCTTTAAGA----GTTTAGGCTGCTTTGAAATGGGCTCATCTGAAATTGAAAAAGGAAGA-AATTGAAC-TTGCTAAAAAAGGCCCTTCCAACTTATTGACTGAGAACCCAGTAATCTGGAGACTTGAAGGGCTGTAATGGCAGAATCTTCTACTCTAAGATAAAGTTAGCATGAGCAGAGACAGGAAGATGAGAGACCTAAT s canFam1.chr9 23348624 223 - 53642819 TAAGTATCGGAATATAATAGCTACTTCTTGCATCCATCAGTGAGCTACTTTAGGAAAGAGTTTAGACAATTTTGATATGGCCTTATCTGAAATCAGAAAAGGAGAACAATTCAACTTTGTTATGAAAGGCTTTTTCAACCTGCCAACTGAGAG-CCAGTCATCTGGAG-------------------------TTTCTACTTAAAGCTAAAGTTAGTGCAAGCAGAGGCAGGGAGGTAAGAAACTTCAC a score=18808.0 s hg17.chr17_random 762279 125 + 2618010 GAGGCCAAGG-------------GTCAAACATTCATCACCTCCACAT-----------------GGGCCAAGATGCAGGCAGAGGTCTCTCACCA-------GGGACTTGGTGG--TAGAGGTGACACT-GGTAGTGAGGTCTGTGCTAGAAAGTGCACATCCCT s panTro1.chr19_random 2742416 125 + 57627672 GAGGCCAAGG-------------GTCAAATATTCATCACCTCCACAT-----------------GGGCCAAGATGCAGGCAGAGGTCTCTCACCA-------GGGACTTGGTGG--TAGAGGTGACACT-GGTAGTGAGGTCTGTGCTAGAAAGTGCACATCCCT s canFam1.chr9 23348960 165 - 53642819 GAGGCCAGGGTTTGGGGCGAGATATCAGATATTCGTCACTTCCCTACGTTGCCCCACCTCTGCAGGGGCGATGTGGAGGCAGAGGTCTGTCCCCAACAAGCTGGGAGTCAGAGGTATAGGGGTGGGACTCAGGACTGAAGCCTGTGCTAGGAAGCTCACATTCTC a score=28740.0 s hg17.chr17_random 762404 322 + 2618010 ggctgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcatgagttcaagaccagcctggccaacatagtgaaaccccgtctctactaaaaatccaaaaatttagccagatttggtggcaggcacctgtaatctcagctacttgggaagctgaggcaggagaatctcttgaacccaggaggctgaggttgcagtgagccaagatcacaccattgcactccagcccaggagacagtacaagactccatctcaaaaaaaaaaaaaaaaaaagaaaagaaaaaAGAAAGTGCCT s panTro1.chr19_random 2742541 312 + 57627672 ggctgggcgcggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatcacgaggtcatgagttcaagaccagcctggccaacatagtgaaaccctgtctctactaaaaatccaaaaatttagccagatttggtggcaggcacctgtaatctcagctacttgggaagctgaggcaggagaatctcttgaacccaggaggctgaggttgcagtgagccaagatcacaccattgcactccagcccaggagacagtacaagactccatctcaaaaaaaaaaaaaa----------gaaaaaagaaaGTGCGT a score=350093.0 s hg17.chr17_random 762726 2189 + 2618010 ATCCCCAACCCCATTTAAAATGCAAATTCGAGCTTTGTAACTGAAAACAT------CTCTGCTTCTGGCTACCTGGCCCATGGAATTGATCAGAAGCAAATAG-----TAGCCTATGGACATTAGAAGGGAGTCACATTGCCAAAGAAACCACAAGACTGGTTCCAAACAGTCGCTGATTACACAATACCTAAGGCAACCTCAGG--------CTAACTCACACAGACAGGAAGTCAGCAGCCTCCAGAAAGCAGATCCTCCACATTGCACATCTCAGAT-TGTCCGTGGAGGACATTCCC------------CCAGGGAGGAGAGCTAGGGA---CTGCCAGATC-AGCTGAACTGC-----------------TTAAAAATGCAATTCCCATTCTCCAGTTCCCTA-ACAGGAGTCTGTGTTTAACTTACTCTGTTTGTTCATAACACTTGTATTTAGGGAATATTGGGCATGATTAAACT--TTGTTTAGCTTTGGGTTTCTGGACCTTGTGAAACAATTCAGTG----CAGGCAAATATTGTATGCCCCTATATTTTTTTCCTGAAAGTCAATAAAGAAGGAATGATGACACCTTCACTGCATCTATGGGGACAAAAGCTGCTC----------------------------------gtgtgtgtg--------------------------------------------------------------tg--------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgA-AAGAGAG------AGACAGAGAACAGCCTTGTCAAAAGGATGTGTTTGTTGCTGTACCCTCATTATACGAAAGCCATCATGGCA-TCAAAATGCTGTAA---GCCAGGCTGAGCTCTATTCTCTCTGCATCAACTCAGAATCCCTACCAGAAAGTGGTTGTGATGGATGGAAT---ATCACCCATCAAAGAACAGGGTAAGATGAGACCAGAGAGGTAAGCTATGCAAGCTAATCAGAAAATAACTCaaagttttaaaagtgcagaatataaaaaggaaaaaccctcattcctaaaaaaa---tttaa-aaaaagcctcatttcctcaaagaaacgacagttagctatttgatgtgtgtctttccaaatatttgcctatgtaaatatatgtgtgtatatggcttttaaaaataaaaacaaaataatatccttt--acagacagttttgtagcATATGTAGAGAATATATATGCATATACTGAATGTAAATAGATATGCATTTTACCTAGAATATTACGGACACTTTCCACAGTTATAGATGTGTGCTGCttttgtttactgactgcagaatattccattgatggacatcttaatcctctactta-ttaatcccctactgatgactgtttgcatttctttgctctttaccaaccatacttgaaagaatatcctcatgtctacatattcttatcttttggcagtgtttctatgaagcagattcctagaaatgggatcaggtcaaatgggatgtaggtcacatagtatgtgcattttaatatttgctaagtaGTAGTGTTTAATTATGCTTTAAAGAGTTTGAGCCCTACAGTTCTAAACATGTTTGGACACAGAAATTAGATTATTTTAAACAAAATGAAATAAGCATAGCTCATAAAAATTAACAC--GTTTGGTTTTCACACAAATATTTTGAATTTCCCTTTCTTCTGCAAAAAGGACCCTAGCTTAGTATGCATTTCTTGTACATATAATG-----CAAGCAATCCATCTATTAAATAACTTACCTTTCA-----AACCTATAGAC--------------AGCATCCTGCTCCACACAGAAGCTGGTTGTCTTTTCATTCTCTAACATTAGCTATTTATTTTGTAGAGTGTAGATTCTAGAGAAATAATGTATAATACACCTGTTGCCATATGCAGAGACTTACCACATTTAGAAAACAGTGGTGAATTCTATTGA------cagtggctctcagtcatt-aacatgc-tatggaacacctcatgagcttgataaaaatatcagttcccaggtctacacctaaagatcctgatgtaattggcttAAATAATCACTGCTGAAACACTCTATGTCAACTCAGAATCCTGA-CAGGAAGTGGTTGCAATGGATAAAGTATCATCTGTTAAAGAATGGGGTAAGATTTGAGTATAGGCGGGTCATACTTTGGGAAATAACTTGGTCaatggttaacagcatagtctgtagttcaataaaagtccagtttgggaacacaattg-accttttacatgctgtgtaacctcagccaagttgtctaacctttctgagccctg-----ggttacttttctgtcaagtggaggtattaat-agtacctaagctgtactattgcattgg s panTro1.chr19_random 2742853 2193 + 57627672 ATCACCAACCCCATTTAAAATGCAAATTCGAGCTTTGTAACTGAAAACAT------CTCTGCTTCTGGCTACCTGGCCCATGGAATTGATCAGAAGCAAATAG-----TAGCCTATGGACATTAGAAGGGAGTCACATTGCCAAAGAAACCACAAGACTGGTTCCAAACAGTCGTTGATTACACAATACCTAAGGCAACCTCAGG--------CTAACTCACACAGACAGAAAGTCAGCAGCCTCCAGAAAGCAGATCCTCCACATTGCACATCTCAGAT-TGTCCGTGGAGGACATTCCC------------CCAGGGAGGAGAGCTAGGGA---CTGCCAGATC-AGCTGAACTGC-----------------TTAAAAATGCAATTCTCATTCTCCAGTTCCCTA-ACAGGAGTCTGTGTTTAACTTACTCTGTTTGTTCATAACACTTGTATTTAGGGAATATTGGGCATGATTAAACT--TTGTTTAGCTTTGGGTTTCTGGACCTTGTGAAACAATTCAGTG----CAGGCAAATATTGTATGCCCCTATATTTTTTTCCTGAAAGTCAATAAAGAAGGAATGATGACACCTTCACTGCATCTATGGGGACAAAAGCTGCTC--------------------------------------Ctgtg--------------------------------------------------------------tg--------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgA-AAGAGAGAGAGACAGAGAGAGAACAGCCTTGTCAAAAGGATGTGTTTGTTGCTGTACCCTCATTATACGAAAGCCATCATGGCA-TCAAAATGCTGTAA---GCCAGGTTGAGCTCTATCCTCTCTGCATCAACTCAGAATCCCTACCAGAAAGTGGTTGTGATGGATGGAAT---ATCACCCATCAAAGAACAGGGTAAGATGAGACCAGAGAGGTAAGCTATGCAAGCTAATCAGAAAATAACTCAAAGTTTTAAAAGTGCAGAATATAAAAAGGAAAAACCCTCATTCCTAAAAAAATTTTTT---AAAAAGCCTCATTTCCTCAAAGAAATGACAGTTAGCTATTTGATGTGTGTCTTTCCAAATATTTGCCTATGTAAATATATGTGTGTATATGGCTTTTAAAAATAAAAACAAAATAATATCCTTT--ACAGACAGTTTTGTAGCATATGTAGAGAATATATATGCATATACTGAATGTAAATAGATATGCATTTTACCTAGAATATTACGGACACTTTCCACAGTTATAGATGTGTGCTGCttttgtttactgactgcagaatattccattgatggacatcttaatcctctactga-ttaatcccctactgatgactgtttgcatttctttgctctttaccaaccatacttgaaagaatatcctcatgtctacatattcttatcttttggcagtgtttctatgaagcagattcctagaaatgggatcaggtcaaatgggatgtaggtcacatagtatgtgcattttaatatttgctaagtaGTAGTGTTTAATTATGCTTTAAAGAGTTTGAGCCCTACAATTCTAAACACGTTTGGACACATAAATTAGATTATTTTAAACAAAATGAAATAAGCATAGCTCATAAAAATTAACAC--GTTTGGTTTTCACACAAATATTTTGAATTTCCCTTTCTTCTGCAAAAAGGACCCTAGCTTAATATGCATTTCTTGTACATATAATG-----CAAGCAATCCATCTATTAAATAACTTACCTTTCA-----AACCTATAGAC--------------AGCATCCTGCTCCACACAGAAGCTGGTTGTCTTTTCATTCTCTAACATTAGCTATTTATTTTGTAGAGTGTAGATTCTAGAGAAATAATGTATAATACACCTGTTGCCATATGCAGATACTTACCACATTTAGAAAATAGTGGTGAATTCTATTGA------cagtggctctcagtcatt-aacatgc-tatggaacacctcatgagcttgataaaaatatcagttcccaggtctacacctaaagatcctgatgtaattggCTTAAATAATCACTGCTGAAACACTCTATGTCAACTCAGAATCCTGACCAGAAAGTGGTTGCAATGGATAAAATATCATTCACTAAAGAATAGGGTAAGATTTGAGTATAGGTGGGTCATACTTTGGGAAATAACTTGATCAATGGTTAACAGCATAGTCTGTCGTTCAATAAAAGTCCAGTTTTGGAACACAATTG-Accgtttacatgctgtgtaacctcagccaagttgtctaacctttctgagccctg-----ggttacttttctgtcaagtggaggtattaat-agtacctaacctgtactattgcattgg s canFam1.chr9 23349125 2250 - 53642819 ACCCCCA-----AGTTAACATGCAAA------ATGTATGACTGGACAAACTCTCTGCTCTGCTCTTAGACA----ATCCATGGAATTGATCAGAAGCAGAGAGATTCAAAACCTCCAATCGTTAGAAGGGTGTTACCTTGCCAAAGAAACCACAAGACCAGCCAGAAATGGCTGTTGATTGCTCAATGCCCAAAGCAA----AGGCCAAGCCCCTAGCTCATGCAGACAGG-AGAAGGCTGCCCCCAGTGAAGGGTTCCTCCCCAGTGCATATCTCAGACAAATCCAGGGAGGACCTTCCCTAGGGCGGCCAACCAGAGAGGCTGACCAAGGAGCTCAGTCACATCTTACTGCTCTGCGATGCACCATATGCTAATTAGCAATGCTATTCCTGTTCTCCACTTTCCAGCACAGGGGTCCTTGTACTATTTATGC----TGTTCACAATGTTTGTGTTTAGGGAAAGTTGGACATGGTTAAGCTTCTTATTTGGGTTTGGGTCACTGGACCTTGAGAAATCACTCAGTGTAAATAAGCAGATTTTGTTTGTCTCAAGACT------CTGGACACCAATAGAGAAA----AGTGACAGTTTCTCTGCTTCTTTGGAGACAAGGGCTGTTCCTCCCATTCTCCTGATAGTATCTACACTCTTACCATGGCTGTGGCTGGTAATGGTGTTAAGGGAATGGGGCGACTTGTAATAGAAGGGGACTGTAAAATGTTGCCTGAGAGGAGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgATATGAAAG------TCCCAGGGAAATGACTTGTCA-----------------CATTGCCCTCATTATATAAAAGCCATGATGGCATTCAAGCTGTTATGACTGGCAACGATGAGCTCTGTCTTATGTGC--CAGTTCAGAGTC---ACCAGAAAGTTATTCCAATGGATGGAGTATCATCACCCATCAGTGGGTAGGGTCAAATGAGAGAGGCAAAGTAAGCAATGCATCCTCATTGAAAAAGAAACAAAAG----AGAAGTGCAGAAAATAAAAAGGAGAAG----TGTCCATGACAAAA---TTAAATAATAGTCTTCTTTTCCTCTAAGAAACCACAGTTAGCTACTTGACATATATATTTCCAAATATTTGCTCTTGTAAATATACATGTGTATACGGCTTTAAAGAATGAAACAGGAGTAATATTATTCTAACATACAGTTCTGTAGCATGCATGTAGAGTATATATGCCTATACTTCATGTAAACACAGACACTTTTTGCACCTAACATGACGCATACTTTCCATAGATATGGATGTGTGTTACTCtt-tttactgattgcagaggtttccattgaccggcatctcaatcctctattgacttaatcctctgctgatggttgtttccattagtttgctatttgcaaactgtgctgcaaagaatattcttctgcctacgtattcctgt-tcttagtagtgttgctacaaaatacattcctagaaatggaatcctggcaaatggcagctagatcaaatactacgtgcattttaatgtttgctTCATAGTAGCATTTAATTGTACTCTAAAGAATTTGATCACTGTAATTCTAAACCAGTTTTGGATCAAAAATTAGATTATTCTAAACAAAATGAAA-AATCATGGCTCAC-AGAATTAACACATGCTTGGTTTTGGCAC-AGCCTTTTGAATTTCC----CTTCTGCGGAAGGGGATCTGGCTCAGTATACATTTCTTATAGTTATAACTATGACTGAATAACCCATCTATTAAATAGCTCAGCTTTCACAGTGAACTTAGAAACTGGCATATAGTATAAATCTATAGCCCCACATATGGGCTGGTTGTCTTTTCCTCCTCTAACATTAGCCATTTACTCTGTAGGGCATGGAATCTACAGAAATAATGTATGCTATCCCTGTAACTGTATGCAGATATACACTGCATTTGGAAAAAAGCAGTGAATCATACTGACTATTGCCgtggtcctcagctgttaaacatgcatgttgaacacctgatgaggttg-tagaactatcaattcccaggcccacacctaaagattctgatATGAATGTCCTAACCAATC------------------------------------------------------------------------------ATGGCGTGTGATTTGAGGACAAGTGGATGATATTTGGGGACATAACTTTGCtagtgttta-----agggtctgtagttacatcaaagtctagttttagaactcagttgtaccatttacttgctgtgtgctctcaaccaagttacttaccctctctgagcctggctgaagtttactcttgaatcacatgaggatattaataagtatttaaactgtactgtttcattgt a score=-114.0 s hg17.chr17_random 764915 1 + 2618010 t s canFam1.chr9 23351375 1 - 53642819 g a score=273.0 s hg17.chr17_random 764915 1 + 2618010 t s panTro1.chr19_random 2745046 1 + 57627672 t s mm5.chr11 83249117 1 + 121648857 T a score=158801.0 s hg17.chr17_random 764916 527 + 2618010 aagattaaatgaacaatgtataaaa--agcactcag-taggagtaagcctcaacaatgtaactaattgctatt--AAGAGCTTGATTCATCATGAATATGCCC------------------------------------TACAGAATACTCTGCTTAATGGT--GTCCATTCAAGTAGTTAATTCTCCTAGAGCGTGCATATTACGATTTGAGTTATAACATATTCGTAGTTTCAATGTTCCAGAACT---------TTGTGAAGTGGATA-----ACTCTGTCGTAG-------------CGCTCCCCATCTC-TCCCAATTTCCCTCCA--------TTTCACCTCTTCCTAATCTTTGCCTATGATTCCTCTTAACCAGTGATTTTGATTTGCCAGAAAAA----------------CAAAACCAAACTCAATACTGGTTTACCGTTTAAAAGAACATCTTTATTATTTCCCCAGG-CCGATCACAGCCCTGAACAAAAGCATCTGATACACATTTGTCAGTCTGGTGGCTTTGGTGCCATGACTGCCTACACAGGCCGATGACAGCCACTCGGTTGTCACCAG---ACA----------CACTGTGAGGGAAGGTGGAG------GGGACAGG----GGGAA s panTro1.chr19_random 2745047 527 + 57627672 aagattaaatgaacaatgtgtaaaa--agcactcag-TAGGAGTAAGCCTCAACAATGTAAGTAATTGCTATT--AAGAGCTTGATTCATCATGAATATGCCC------------------------------------TACAGAATACTCTGCTTAATGGT--GTCCATTCGAGTAGTTAATTCCCCTAGAGCGTGCATATTACGATTTGAGTTATAACATATTCGTAGTTTCAATGTTCCAGAACT---------TTGTAAAGTGGATA-----ACTCTGTGGTAG-------------CGCTCCCCATCTC-TCCCAATTTCCCTCCA--------TTTCACCTCTTCCTAATCTTTGCCTATCATTCCTCTTAACCAGTGATTTTGATTTGCCAGAAAAA----------------CAAAACCAAACTCAATACTGGTTTACCTTTTAAAAGAGCATCTTTATTATTTCCCCAGGCCCGATCACAGCCCTGAACAAAAGCATCCGATACACATTTGTCAGTCTGGTGGCTTTGGTGCCATGACTGCCTACACAGGCCGATGACAGCCACTCGGTTGTCACCAG---ACA----------CACTG-GAGGGAAGGCAGAG------GGGACAGG----GGGAA s mm5.chr11 83249118 549 + 121648857 AATATCAAATGGACAAGGTATAAAAATAACACCAAGTTTAGGGTAATCCTCAAAACTGTTCCTAA----------GAAAGCTTGATTTGTGGTATGCATAACT-----------------------------------------AATACTCCATTGGATGATAAAATTATTTAAATGGTGACTTTTTATAGTGAAGGTTCATTATGAGTTGATTCACAAAATAGTCACCATTTTAGGGTTCCAGATCCACATTTCCATTATGAAGTGGAGAAGTCTACTCCATGGGAGTCTCCCCATTCTCCTCTCCCCACCCC-TTCCAACACACTCCCAACTTCC--ATTCACAGCTTCCTATTCTTTG-CTGTTATTCCTCTTAACCAGTAAGTCTGACTTTCCAGAAAAATAAAAATAAAATAAAATAAAATAAAACTCAACACCAGTC--ACTTGTTAAAGGGCATATTTATTACTTCTCTGGT-------------ATAAAC-AAAGCATCTATTGTACATTTGTCAGT-TCATGACTTTGTCATCATGTCTACCTAGA----------ATAGC--------TGTCACCAA---ACA--GTGTGACCAACTG-GGAGGGAGATGGGG-GTTGAGGAACGTGTCCTGAAGT s rn3.chr10 71758561 530 + 110733352 AATATCAAATGGGCAAGGCATAAAAACAATACCGAGTTTAGAATAATCTTCAAAACCGTTCCTAA----------ACAGGTTTGATTTATGGTAT-----TCT-----------------------------------------AATACTCCATTGAATGGGATAACTATTTAAATGGTGACTTTTTCTAGAGAAGGCTCATTATGAGTTGATTCGCAAAATAGCCACCATTTTAGGGTTCCAGATCCACACTTCCAGCATGAAGTGGAGT----TACTCCGTGGAAGTCTCCCCATTCTCACCTCCCCACCCCTTCCCACCACACTCCCAGCTTCCATTTTACCAGCTTCCTAGTCTTTG-CTGTTATTCCTCTCAACCAATAATTCTGACTTTCCAGAAAAA----------------TAAAATAAAACTCAACACCAGTC--ACTTGTTAAAGAGCATATTTATTATTTCTCTGGT-------------ATAGAC-AAAGCATCCATTGTACATTTGTCAGT-TCATGACTTTGTCATCACGTCTACCTAGA----------ATAAT--------TGTCACCAA---ACACAGTGTGAGCAACTG-GGAGGGGGGAGGAGGGCTGAGGAATGTGCCCTGAGGT s canFam1.chr9 23351376 578 - 53642819 aagatcaaatggaccctacttaaaa--aacacgcagcctgaagtaggtctcaata-tgttagtaattgttATTAAGAAAGCTTGatttattataaataaatctatttattattatttactattatttattataaataaataaatGACACTCTTCTTACTAAT--ATCCA------TAGTAAACTTTCCTGAAGCATGTATATTATGATTTGATTTATGAAATATTGATAATTTCAATGATCCAGAAAAGTGGCTCCATTATAAAGCAGAGT-----ATCTCTGGCTAG----------CTACTCT-TTTATCTT-TCCCAATTCCCTCCT---------TTTCACACCTGCCTATTTTTTGCCTATTATTCCTTCTGACCAGCGATTCTGACTTTGCAGA--------------------CAAAACCAAACTCAATACCAGTT-----TTCAAAGGACTACCTTTATTATTTCTCTAGG-CTGAACACAGCATTGAACAGAAACATCTTA-ATACACACGTCAGTCTGGTGGCTTGCATGCCACTTCTGCCTAGAATAAACCAGGACAGTCACTCAATTGACACCAATCCACA--GTGCAAATGAAGG-GACCAGGGGAGGAC-AGTGAAGAAGGTATCTTGGGGT a score=17150.0 s hg17.chr17_random 765443 27 + 2618010 CTCTCAGAGCAAACAATCACAAACACA s panTro1.chr19_random 2745574 27 + 57627672 CTCTCAGAGCAAACAATCACAAACACA s mm5.chr11 83249667 27 + 121648857 CTTTCAGAATAAATAGTCACAAATACA s rn3.chr10 71759091 27 + 110733352 CTTTCAGAATAAATAGCTACAAACACA s canFam1.chr9 23351954 22 - 53642819 CTCTCGGAGCAAATGGTCCCAG----- s galGal2.chr19 251588 27 + 9463882 CTTCCATTACAAACAATTAAATACATA a score=26413.0 s hg17.chr17_random 765470 57 + 2618010 C-TGTGAAATCaaaaataaattataaaaactaaatagtat----------------aaataaattaaaatttaa s panTro1.chr19_random 2745601 57 + 57627672 C-TGTGAAATCaaaaataaattataaaaactaaatagtat----------------aaataaattaaaatttaa s mm5.chr11 83249694 72 + 121648857 AGTATGACAAT-AAAATAAATTAC-AAAATTAAATAGTATTAAACCAATAGGATTAAATTAAATAAAATTTCAA s rn3.chr10 71759118 72 + 110733352 AATGTGACAAT-AAAATAAATTAA-AAAATTAAATAGTATTAAATCAATAGGATTAAATTAAATAAAAATTCAA s canFam1.chr9 23351976 56 - 53642819 --TATGACATTGAAAATAAATAACAAAAATTAAATAGTAT----------------AAATAAGTTGAAATTTAA a score=139140.0 s hg17.chr17_random 765527 515 + 2618010 GTTAAGAAGAGTCCCACAGTGTGGCTGTTTGGCAATAACCAGTCCATAGAAGAGGTAGCTGTAGAGGTCACACGCATGTTCCCAAGGCTCAGGCTCCTGCTCCTCCCCACTGGGCCCACTGAGGTCGCTGGG---CCTCGAAGCTTCTGGACCCCTCAGGCACTCAGCTCCAGGTCACTGACGTATTTCTGGACCCACTCCTCACTGGGGTCAGCACAGACCTGCCGGCCTCTCTTGGTTAGGAAGCTGTGGAGAAGGGAGGAAGAGTT-AAGCACTGGGGAATCCAGCCGGGGAATCCTGGGCCCACCATGGCCCTGACATCCTGCTCTCTGTCCTGGGCAGCTCAAGGCCT-GCTCCTCTCTCAGGGGCCCCCTGCCTATCTCCGTCTAGAGA-GCTTCTCTCAGTGACTCCA---GGCAAGGGGGCCCTCAGAGTGTCCTGCTGCCTCCTTCTTCCTG--TTCCTTTCCTCTGGCCTGGGGCAGCCCTTCCTGACTCTGTAACACCCACCTCACTCCAGCCCC- s panTro1.chr19_random 2745658 514 + 57627672 GTTAAGAAGAGTCCCACAGTGTGGCTGTTTGGTAACAACCAGTCCATAGAAGAGGTAGCTGTGGAGGTCACAGGGATGTTCCCAAGGCTCAGGCTCCTGCTCCTCCCCACTGGGCCCACCGAGGTCGCTGGG---CCTTGAAGCTTCTGGACCCCTCAGGCACTTAGCTCCAGGTCACTGACGTATTTCTGGACCCACTCCTCACTGGGGTCAGCACAGACCTGCCGGCCTCTCTTGGTTAGGAAGCTGTGGAGAAGGGAGGAAGAGTT-AAGCACTGGGGAATCCAGCAGGGGAATCCTGGGCCCACCATGGCCCCGACATCCTGCTCTCTGTCCTGGGCAGCTCAAGGCCT-GCTCCTCGTTCAGGGGCCCCCTGCCTATCTCCGTCTAGAGA-GCTGCTCTCAGTGACTCCA---GGCAAGGGGGCCCTCAGAGTGTCCTGCTGCCTCCTTCTTCCTG--TTCCTTTCCTCTGGCCT-GGGCAGCCCTTCCTGACTCTCTAACACCCACCTCACTCCAGCCCC- s mm5.chr11 83249766 386 + 121648857 GT---GAAGAGTCCCTCGATGTGGCTACTTGGCAGCAAACAGCTTATAGGAGATGGAGCTATGCAGGTGGCAGGAATGTT-CCGGGGCTCAAGCCCCTG---CTCTACACGGGACCCATGGAGGTTTGGGGGGTTCCTCGCTGCCTCCAAGACTCTCAGGCATTCAGTTCCAGGTCAGTGATGTATTCTTGGACCCAGGTCTCTTTGGAGTCAGCGCAGATCTGCCGGTTTCTCTTAGTCAGGAAACTACACAGAGAGAGGTAAGGGTCAAAAAACTTAAATATCCAATGGGAGAGT------------------CTGACTTC-----CTCTGT--------------GGTTT-CTCCATCGCTC-------------------CCGTC-----------CTCTCACTGGCAC---------------CCTTTAGATGATCCTG-TGCTTCCCTTTTTGTG-------------------------------------------------ACTGCACCCCCGCCCC- s rn3.chr10 71759190 406 + 110733352 GT---GAAGAGTCCCTGGATGTGGCTACTTGGCAGCAAACAGCTTATAGGAGGGGGAGATTTGCAGGTGGCAGGAATGTT-CTGGGGCTCAAGCCCCTG---CTCTACACGGGGCCCACGGAGGTTTGGGGG-TTCCTTGCTGCCTCTAA---TCTCAGGCATTTAGTTCCAGCTCAGTGATGTATTCTTGGACCCAGGTCTCTTTGGGGTCAGCGCAGATCTGCCGGTTTCTCTTGGTCAGGAAACTATACGGAGAGACG--AGAGTCAAAGAATTAAAACATCCTACGGGAGAGTCTGATGTCCTCTATTGTTTCCCCACCCCACCC-------------------GTCCT-CATCGTCGC------------------------TCTCCAGA-GCCTCTCTCACTGGCC----------------CCTTTAGATCGTCCTG-TGCTTCCCTTTTTGTG---------------------------------------------ACATACCAACCCCCAACCCC- s canFam1.chr9 23352032 502 - 53642819 GTTAGAAAGAGTCCCTGAGTGTGGCTGTTTGGCAACAACCAACCCACAGGAGAGGTAGCTGTGGAGGTTAGAGGGGTGTTTCCAAGGCTCGGACTTCTG---CTCCCCAGTCAGCCCACTGAGGTCACTGGG--TTCTCCAAGCTTCCAGGCCACTCAGGCTTTCAGCTTCAGATCGGCCACATATTCCTGGACCCAGGCCTCACTGGGGTTGGCACAGGCCTGGCGGCCTTTTCTGGTTTCGAAGCTATGGAGAGAAGTGGAAGGATT-ATATACCAAGGAATCCAGCAAGAGGATGCTGAGTCCACTGTGGCCCCT-CGCCCCACTCTCTGTCCTGGTCAGCTGGGGGCATACCTACTTTCTCAGAGACTCTCTGCCCACCTCAGTCTAGAGA-GCAGCTCTCACTGACTTGGGGTGGTGGGGGTGCATCCAGGGGACCCTGCTGTCAACTCCTTTATTTCTCTCTTCCTTCTGGGCTGGATCAACCCTCTCTGACTTTG----------------CAAGCCCC- s galGal2.chr19 251619 408 + 9463882 GTAAAGCGGATTC------TGGGACATTTT---------CAGTCTCTC----AGGTAGCTCTCCATGTCACAGTTGCGTTTCTGG----CAGG-----G---CCTGCAAGTGGGCATAGCGTGCTCATCCCA---TCCTGGTGCATCAG-------------TTCAGTTCCAGCTTGTTCATGTAGTCCTGTACCCAGTCGTTCTCGGGGTTGGCACAGACCTCACGGCCCTTCCTGGTGATGAACCTGCAGGGAG--------------CAGCCAGGTGAGATCCCATGGGAAAGCCCTG-------CATGGAGGTGACCCCTTCTTCTCCAC---------------TCCA-CACCCTCTCCTGCTGATCGTTGGCACAATCCGGGCACGTGATGCTGACCACACGGGCAGCA----------GAGCCCTGGGGCAGGACCAGTGTGAGCCCCACCAGC-------------------------ATCCCCTTGCACTCATTGTCTCCACATCCATTCTATCCCCC a score=919.0 s hg17.chr17_random 766042 19 + 2618010 AAGTCAGGTCACACCTCAG s canFam1.chr9 23352538 19 - 53642819 AGGTCAGGTCACACCTCAG s galGal2.chr19 252027 10 + 9463882 ---------CAGAAAGGAG a score=2246.0 s hg17.chr17_random 766042 18 + 2618010 AAGTCAGGTCACACCTCA s panTro1.chr19_random 2746172 18 + 57627672 AAGTCAGGTCACACCTCA s mm5.chr11 83250152 7 + 121648857 -----------CACCCCA s canFam1.chr9 23352538 18 - 53642819 AGGTCAGGTCACACCTCA s galGal2.chr19 252027 9 + 9463882 ----CAGAAAGGA----- a score=100.0 s hg17.chr17_random 766060 1 + 2618010 G s panTro1.chr19_random 2746190 1 + 57627672 G a score=-609.0 s hg17.chr17_random 766061 25 + 2618010 TGCCCTGCGTCCTGTATCCCCGATA s panTro1.chr19_random 2746191 25 + 57627672 TGCCCTGCGTCCTGTATCCCCGATA s rn3.chr10 71759596 19 + 110733352 TGCC------CCTGTGACTGAGAAA s canFam1.chr9 23352557 25 - 53642819 AGACTGGGGTCCTACATACCTCATA s galGal2.chr19 252037 13 + 9463882 -----TGGTTCCCCTCCC------- a score=1625.0 s hg17.chr17_random 766086 51 + 2618010 GGCTCCTGAAGGCTGGGCCTTTCCAGGATGGC-CTTCTGGCCTGTTTCTGCC s canFam1.chr9 23352582 52 - 53642819 GGCCCCAGAGGGCTGTGCCATTCCAGGATGGCACCCCAGGCCAGTCTTTGCC s galGal2.chr19 252050 29 + 9463882 AGCTCCAAAATGCAG---------AGGAT----TCCCCAGCC---------- a score=7072.0 s hg17.chr17_random 766086 24 + 2618010 GGCTCCTGAAGGCTGGGCCTTTCC s panTro1.chr19_random 2746216 24 + 57627672 GGCTCCTGAAGGCTGGGCCTTTCC s canFam1.chr9 23352582 24 - 53642819 GGCCCCAGAGGGCTGTGCCATTCC s galGal2.chr19 252050 24 + 9463882 AGCTCCAAAATGCAGAGGATTCCC a score=2862.0 s hg17.chr17_random 766110 16 + 2618010 AGGATGGC-CTTCTGGC s panTro1.chr19_random 2746240 16 + 57627672 AGGATGGC-CTTCTGGC s canFam1.chr9 23352606 17 - 53642819 AGGATGGCACCCCAGGC a score=2010.0 s hg17.chr17_random 766126 6 + 2618010 CTGTTT s panTro1.chr19_random 2746256 6 + 57627672 CTGTTT s mm5.chr11 83250182 6 + 121648857 CTGTTC s canFam1.chr9 23352623 6 - 53642819 CAGTCT a score=1774.0 s hg17.chr17_random 766132 5 + 2618010 CTGCC s panTro1.chr19_random 2746262 5 + 57627672 CTGCC s mm5.chr11 83250188 5 + 121648857 CTCAC s canFam1.chr9 23352629 5 - 53642819 TTGCC s galGal2.chr19 252074 5 + 9463882 CAGCC a score=105091.0 s hg17.chr17_random 766137 268 + 2618010 CCCACCCT-GACACTCCCTACCTCCCTAG-----------AGGTGAGCAGGAAGACTGGCACTTACATGACACTGGGCTTGGAGCACTGGCTGCTCGTCTCAAAGTAGTCAGCTATGAAATTCTGTGGAATCTGTCGGGAGGTGTAGCTGAAGCAGCAGGCGGTCGGCGTGTCAGCAGCAACTGCGGAGAAAGGAG-AGAATAAGCCCGAGTCACAGCTCAGAAGAAAAGGCCAGGCAG----CTTCTGATCCCTGAGTGGTTGAGGA---------GGGC-------------------------AGGCTTGCTCAGA s panTro1.chr19_random 2746267 269 + 57627672 CCCACCCT-GACACTCCCTACCTCCCTAG-----------AGGTGAGCAGGAAGACTGGCACTTACATGACACCGGGCTTGGAGCACTGGCTGCTGGTCTCAAAGTAGTCCGCTATGAAATTCTGTGGAATCTGTCGGGAGATATAGCTGAAGCAGCAGGCGGTCGGCGTGTCAGCAGCAACTGCAGAGAAAGGAG-AGAATAAGCACGAGTCACAGCTCAGAAGAAAAGGCCAGGCAGC---CTTCTGATCCCTGAGTGGTTGAGGA---------GGGC-------------------------AGGCTTGCTCAGA s mm5.chr11 83250193 239 + 121648857 CCCACTTT-ATCA---------------------------GGAAAAGCACGAGAAC-AGAACTTACATGACACCTGGCTGGGAGCAAAGGCTGCTGGTTTCAAAATAGTCAACGATGAATTGGCGTGGAATCTTCCG---GCTGTAGGAGAAGCAGCAGGCAGTCGGGGTGTCAGCTCCATCTGTAGGGGAAGAA--------------AGTCATCATTGAACAGGGTAGGACA---------CCTAAAACAACTTAAGAGGCGAGGAAGGTGCTTGGGGT-------------------------GGGAGTTGGAAGG s rn3.chr10 71759615 280 + 110733352 CCCTCTCT-TACAAT-----GTTCCACAGGAAATGTTATCAGGAAAGAAGGAGAAC-AGAACTTACATGACACCCGGCTGGGAGCAAAGGCTGCTGGTCTCAAAATAGTCAGCAATGAATTTTCGTGGAATTTGCCG---TCCATAGGAGAAGCAGCAGGCAGTCGGGGTGTCAGCTCCATCTGCAGGGGAAGGGACAGAACAAATTCTAGTCATCCTTGAGCAGGACAGGACA---------GCTACTACAACTTAAGAGTCGAGGA---------AGGCTGCCTTCTTGGGG-----------TGGGAGTTGGAAGG s canFam1.chr9 23352647 281 - 53642819 CCCATTGTAGACCCTCCCTGCCTCCCCAG-----------AGCTGGGCAGGAAGACTGGCACTTACATAATACCGGGCTTGGAGCATTGGCTGCTGGTCTCAAAGCAGTCGACTATGAACTTGCGTGGAATCTGCTTGGAGACGTAGGAGAAGCAGCAGGCTATTGGGGTGTCAGCACCAACTGTGGAGGAAGAGAGAGAAGGAGCCTGAGTCACAGTTTGGAAGGAAAAATGA---------GATTGGATCCCTGAGAAGGTGAGAA---------AGAC-------TTGGAGGAAAACTTCGCTCGGAGT--GCAGG s galGal2.chr19 252079 254 + 9463882 -----------CAAAGGCAGAGCCCCCTG----------------ACCAGGGGGAC----ACTTACACAACGCCAGCATGAGGGCACTGGCTGTTGGTCTCGTAGTAGTCTGCCACAAAGCTGAAGGGCAGCTGCCGGGAGATGTAGGTGAAGCAGCAGGAGGTCGGCGGGTCAGAACCCACTGCAAAGGCAAAGGCAGCTGTGAGCAGGGGCATGGGGCAGGGAGAAGGGGCAGGGAGATGGGAGCAGAGCCCTCATGGGTCAGGGA---------ACGG-------------------------AGCCATGGTAGGA a score=122526.0 s hg17.chr17_random 766405 578 + 2618010 CCAAGTG--------ACTGCAAGGCATTTGGGGGGTTTTGCAGAGAAATGTCTC----------TTTGTTTCTGT-CTATATTCC-TCTTTCCCCTTGACTCTTCATAGT-GGGTTCTCTGTTTCTCTATGTGATCCAGATACCTGAATGGA---CTGTTCTCTTAGCTCTCTTCATGGAATTTTGTC-GGTTCAAGAAGTCATACCCCAGCCCAAGAGAAGCCCTGGACATCTCTCATAAGACATCCAAGGGACAGGGCTCC-TGGGAGACCTAGGGTGAGCTGGAGAGTGAACAACAG-----ACCCCACTGGGAAGTAAGCAGCCCTGGATTCTGCCTCTTGCAAACTGATTCGTTT-TGAACCCTGTTTTTCTATCTGTACAA-GGGACTGTAACTCCCCTGCCCCTGCCTAGATTCTCATACCTGGAGACTAGGAGGGCTAAGACCCCTTC------TAGAGATAAAAATAAAAGTTGTGAAGAAAAAGACCAAGGTGTTTGGCAGCGCTTTAAGAACTTCCTTCTTTTCTCTTCGGGGCTCTCAG-GCCGCAAAA-AAAGACTGATGTGGTCTAACCAT--GGCCAGAGAGTGGTGATACCCACAACAACAACAT s panTro1.chr19_random 2746536 581 + 57627672 CCAAGTG--------ACTGGAAGGCATTTGGGGGGTTTTGCAGAGAAATGTCTC---------TTTTGTTTCTGT-CTATATTCCTTCTTTCCCCTTGACTCTTCATAGTGGGGTTCTCTGTTTCTCTATGTGATCAAGATACCTGAATGGA---CTGTTTTCTTAGCTCTCTTCAGGGAATTTTGTC-GGTTCAAGAAGTCATACCCCAGCCCAAGAGAAGCCCTGGACATCTCTCATAAGACATCCAAGGGACAGGGCTCC-TGGGAGACCTAGGGTGAGCTGGAGAGTGAACAACAG-----ACCCCACTGGGAAGTAAGCAGCCCTGGATTCTGCCTCTTGCAAACTGATTCGTTT-TGAACCCTGTTTTTCTATCTGTACAA-GGGACTGTAACTCCCCTGCCCCTGCCTAGATTCTCATACCTGGAGACTAGGAGGGCTAAGACCCCTTC------TAGAGATAAAAATAAAAGTCGTGAAGAAAAAGACCAAGGTGTTTGGCAGCGCTTTAAGAACTTCCTTCTTTTCTCTTCGGGGCTCTCAG-GCCACAAAA-AAAGACTGATGTGGTCTAACCAT--GGCCAGAGAGTGGTGATACCCACAACAACAACAT s mm5.chr11 83250432 423 + 121648857 CTAAGGA--------TCTG-AAGGCATTTGGGCATTTGGGACCAGAAATGTC------------ATTGTTTCTGT-CTCTGTTCTATCTAT--------ATTTTCACTGT-GGGCTTTCTCTTTCTCTATGTGTTGC-----CCTGTGT-------CTTTCCCACAGCTTTCTCTA--------------ATACCAGAAGTCAG--------CAAAGAAGACACCAGAGCATCAC-CATAAGACATCCCAGAGGCAGAGCTCCTTAAGAATCCCAGGGCTGGCTAGTAAGTACATGAC-----------------------------------------------------------------AACACTATCCTT----------------ACTGTGATTTC-------------AAGTTCT------GGGTACCTATAAAAGGTTAGACCCTTCCACACCATAGAGAGGAAAATAAAAATCTCAAAGAGAAAGACCAG---------------------------CTTCTTTTCTCTTGTAGACTCTGAA-ACCAC-AGA-AAAGACTGCTATGGTCTGCCTTA--GACCAGAGACTGGGGACACCTCCTGTAGCAGTGT s rn3.chr10 71759895 431 + 110733352 CTGAGGC--------TCTG-AAGGCATTTGGGCATTTGGGACCAGAAATATCCCCATGTCCATCTTTGTTTCTGTCCTCTGTTCTCTCTGG--------ATCTTCACTGT-GGACTTTCTCTTCCTCTGTTTTCTGC-----CCTGTGT-------CATTCCCACAGCTTTCCCTA--------------ATACC---AGTCAG--------CAAAAAGGACACCAGGGTATCA--CATAAGGCATCCCAGAGGCAGACTTCCGTAGGAATCCTAGGACTGACTGGTAAGTACACGGCAGCACTAACCTCACTGTGATTTCA--AGTTCTGGGTACC---------------------------------------------TACGA-AAGGTTAGAGCT------------------TTCT--------------------------ACCCCA--------TAGAAAGGAAAATAAAAGTCTCAAAGAGAAAGACCAG---------------------------TTTCTTTTCTCTTGTAAACTCTGAA-GCCAC-AGA-AAAGACTGCTGTGGTCTGCCTTA--GATCAGAGAATGG-GACACCTCCTGTAGCAGCGT s canFam1.chr9 23352928 597 - 53642819 CTGGGGGACAGGATCACTGGAGGGCA-CTGGGCATCTTTGCCTAGAAATATGCCTGTCTCTGTCCTGGTTTCTGT-CTGTGTCT--TCTTTCTCCTTGACTTTTTGTCAT-GGGCTGTC--TTTCTTGATGTGATCCAAACATCTAAGCAGACTGCTCTTGTCTCATCTCGCCCCTGGAAATTTTGCCTGGTTCAAGAAGTCCT-GTCTTGCAAACAAAAAACCTTGGACATCTCTCTTATGACATCCAGGGGACAGTGCTCT-GGGGAGGTCTAGGGTGAGTGAGGGGAAGAATG---------ACCCCACCGGGAGGTCACTAGGCTTGGATTGAGCCTCTTGCAGACTCATTTGTTTAGGGTCCCTATTTTTCCATCTGTAAAATGGGACTGTAACTCCCCTACCTCACCCTGG-CTCTCAGATCTGGGGCCTGGGAAAGCTAAGATCCCTTTA-----TGAAGATGAAAATAAAAGTCTTGAAGAGAAAGGCCACGATGTTTTCTAGCCCTCTGAGAAGCTCCCTATTTTCTCCTGGGGGCTCCCAACGCCATGAGACAGAAATGGATGTGGTCCGGCTGTGGGGACAGAGCATGGGGACATGTGCAGCAACAACAG a score=215252.0 s hg17.chr17_random 766983 351 + 2618010 GGACTCACGTGGTGCAGAGAGGACCTGGTTGCAGAGAGCCATGGTGCAGAGGAGGACGGCAAGGGCAGCAGTGGAGACCTGCATGATTGGGAGCAGGTGATGG-AATGTGGGCT--CGAGTGTCAGCAGAGCCAAGAAGGGACTGACTACTCTTTGCTGCCTGCGTCCTTCTGATGTCTGAAGCCATCTCTC---CTCTTTATAG-----GCAGCCCTGG---------CGGATGGGGAAATGGAATCTGGGGGTGAGGAGGGAAATTTTTAAGTGTAGTGATGCTGTCATGCTGAGTGTTGCACAACTCAGGGTCCCTGG-TGACCACAGGGGCTCAGGATATCCAAGAATA---------------GCATCTCTGAGCTACTCTC s panTro1.chr19_random 2747117 337 + 57627672 GGACTCACGTGG-----------------TGCAGAGAGCCATGGTGCAGAGCAGGACGGCAAGGGCAGCAGTGGAGACCTGCATGATTGTGAGCAGGTGATGG-AATGTGGGCT--CGAGTGTCAGCAGAGCCAAGAAGGGACTGACTACTCTTTGCTGCCTGCGTCCTTCTGATGTCTGAAGCCATCTCTCCTTCTCTTTATAG-----GCAGCCCTGG---------CGGATGGGGAAATGGAATCTGGGGGTGAGGAGGGAAATTTTTAAGTGTAGTGATGCTGTCATGCTGAGTGTTGCACAACTCAGGGTCCCTGG-TGACCACAGGGGCTCAGGATATCCAAGAATA---------------GCATCTCTGAGCTACTGTC s mm5.chr11 83250855 344 + 121648857 AGACTCACATGGCGCTGAGAAGACTTGGTTGCAGAGTGTCATGGTACAGAGAAGAACAGCAAGGGCAGTGGTGGAGACCTTCATGATGTTGAGCAGGTGACAG-AGGGTGAGCT------TGTCAGCAGAACAGAAAAGGGACTGG-TACTCGCTGCTGCTTGTATCCTTCTGGTGTCTGAAGCCATATGCCCCTTCTCTTATAG-----GTAGCCCTAG---------CAGATGAGGAAATGGAATCCGGGGCTGAGGAGGGAAAATTTTAAGCACAGCAATGGTGTCATGATGGATATTACACAACCCAGGGTCCACAG-TGACCACAGGGGCCCAGGATATCTAAGAATA---------------GCATCTCTGAGATA----- s rn3.chr10 71760326 345 + 110733352 GGACTCACATGGCGCTGAGAAGACTTCGTTCCAGAGCGCCATGGTGCAGAGAAGAACAGCAAGGGCAGCGGTGGAGACCTTCATGGTGCTGAGCAGGTAACAG-AGGGTGCGCT------TGTCAGCAGAGCAGAGAAGGGACTGG-TACTCGCTGCCTCTTGTGTCCTTCTGGTGTCTGAAGCCATATGCTGCTTCTCTTATAG-----GTAGCCCTGG---------CCGATGAGGAAATGGAATCTGGGGCTGTGTAGGGAAAATTTTAAGTACAGCAATGGTGTCATGTTGAACATTACACAACCCAGGGTCCCCGGATAACCACAGGGGCTCAGGATATCCAAGAATA---------------GCATCTCTGAGATA----- s canFam1.chr9 23353525 344 - 53642819 AGACTCACATGGTGCAGAGAAGACCTGGCTGCAGAGGGACATGGTGCAGAGGAGGACGGCGAGGGCAGCCCCGGGGACCTTCATGACGCTGAGCTGTGGATGG-AGCAAGGGCT--TGCTTGTCTGCAG-----AGGTGGGCCTGGGCGCTTGCTGCTGCCTGTGTCCTTCTGGAGAGTGAACAGATCTCCCCTGCTCTTTATAG-----GCAGCCCTGG---------TGGAAGGGGAAATGGAATCTGGGGGTGTGGAGGGAAATTTTTAAGCACAGTGGTGTTGTCACGCTGAGTGTTGCACAACTCAGGGTCCCAGG-GTACCACAGGAGTTCAGGATATCCAAGAATA---------------GCTTCTCTGAGTTA----- s galGal2.chr19 252405 335 + 9463882 GGACTTACCCGGTGCAGCAGAGGTCTGGTAGCAGATGGCAAT------GAGGAGGACAGCGAGGGCAGCCACAGAGACCTTCATG----TCAGCTGGGAGTGGTGGCAGGAGCTGGAGAGTGCAAGTGGAGCTCGGAGGTCTC----TTCTCTGTGATGC-TGAGACATTCAG-----------CAACTGCC---CAATTTATAGGGCGTGTGGCTCTGGGCAGCTGCTTGCGTAGAGCGGTGGAATTTCCCCCCGAGAAAGGG-----CTGATCGCAGC-ACGGTCTCATGATGGA------ACAGTGCGGTGGCCACAG-CCTCCCCAATGGCACAGGATATGAAACAATCGCCGTATCTATTTTTGCTTCTCTC---------- a score=64299.0 s hg17.chr17_random 767334 117 + 2618010 TAACTCTCAGCTCTCAACTCATGACTGGTTCTAGCTTCATGGG--------GTTTCTCCTGTGAGTGTGAAGAGG----GGTGTGTGTCAACCCAAGGCTATTCTTAGTTGATCCCTTCTCATAAGAAC s panTro1.chr19_random 2747454 117 + 57627672 TAACTCTCACCTCTCAACTCATTACTGGTTCTAGCTTCATGGG--------GTTTCTCCTGTGAGTGTGAAGAGG----GGTGTGTGTCAACCCAAGGCTATTCTTAGTTGATCCCTTCTCATAAGAAC s mm5.chr11 83251199 127 + 121648857 TAAGTCTCAGCTCTCAACTCGTGACCTATTCTTTCTTCTTGTGGGGAAGTAGTTTCTCTTATGAGCAGGAGGAGG--TAGGACAGTGTCAACCCAGGGCTATTCTTAGCTGGTCCCATCTCATGAGAAC s rn3.chr10 71760671 122 + 110733352 -------CAACTCTCCACTCGTGACCTGTTCTTACTTCTTGTGAGGAAGTAGTTTCTCTTATGAGCGAGAGGTGGGGTAGGACAATGTCAACCCAGGGCTATTCTTAGCTGATCCCTTCTCATGAGAAC s canFam1.chr9 23353869 127 - 53642819 TAAGTTTCAGCCTGAGACCCATGACTTGTTCTGGTTTCTTGTGAGGAAATGGTTTACCCCGTGAGCAGGAGGAGA--GAGCTATGTGTTGACCCAAGGCTATTCTTAGCCGGTCCCTTCCCATAAGACC a score=0.0 s hg17.chr17_random 767451 3 + 2618010 TGG a score=291.0 s hg17.chr17_random 767451 3 + 2618010 TGG s panTro1.chr19_random 2747571 3 + 57627672 TGG a score=602.0 s hg17.chr17_random 767454 3 + 2618010 TCT s panTro1.chr19_random 2747574 3 + 57627672 TCT s rn3.chr10 71760793 3 + 110733352 CCT a score=27023.0 s hg17.chr17_random 767457 306 + 2618010 ATGCagccaggcatggtcgctcacacctgtaatcccaacactttgggaggccgaggctgcggatcacctgaggtc---agtttgagaccaacctgaccaagaaagagaaactccatctctactaaaaatacaaaagtagtcaggcatggtggcacatgcctgtaatcccagctactcgggaggctgagggcaggagaatcgcttgaacccaggaggtgggggctgtggtgagctgagatcatgccattgcactccagcctgggcaacaaaagtaaaactccatctc--aaaaaaaaaaaaaaaaaaagaaT s panTro1.chr19_random 2747577 310 + 57627672 ATGCagccaggcatggtcgctcacacctgtaatcccaacaatttgggaggccgaggctgcggatcacctgaggtcaggagtttgagaccaacctgaccaagaaagagaaactccatctctactaaaaatacaaaagtagtcgggcgtggtggcacatgcctgtaatcccagctactcgggaggctga-ggcaggagaatcgcttgaacccaggaggtgggggctgtggtgagctgagatcatgccattgcactccagcctgggcaacaaaagtgaaactccatctcaaaaaaaaaaaaaaaaaaaaagaaC a score=467.0 s hg17.chr17_random 767763 3 + 2618010 TGG s panTro1.chr19_random 2747887 3 + 57627672 TGG s mm5.chr11 83251326 3 + 121648857 CGT s canFam1.chr9 23353996 3 - 53642819 TGA a score=265068.0 s hg17.chr17_random 767766 737 + 2618010 TCTATGCATGAACTCTCCAGCCCCATTCCTTCCCACAGAGCTGTAATTC---TGCTTCCTCAGCTGCTATAACCACAAGGATAGGGTCAATGGGCTGATGCTGTGGAGGGCTAGACAACCCCCAGTCCTCCCA--GAGGAAAGGAACTCAATGAA---------AGCTGGAGGAATAGAAAGCATGAGGTCACGTTTCAGTCATTTGTCTATTTATTAGTC----TCGGAGTGACT-GGGGCGCTGTGTTAAACGCTAGTTGTGGATCATAAAAATACTTTAGAGGTGGGTGTCAGTATGTCAGGTGCCT-AGAAATATGTGTAGCCATTAACCTAGAAAAAGCATTTCTGGGAAAGAGTTCTGTGGAAAC-AACCCAAATATGGAGCCATCTTCAAACATAAAGATACCTGACCCAGCATCATTTATAACTCTAAAATAAGCAAAGCTAAATTTTTCTCT-ATCAGGGAATGATAAAT--------------TATCCACAAGATCCTTTA-TTATTAAGTCTCTAACGTGaatgaagtggca-----taaatatgcttataacatcagtggttaaaaaaaaagcaagataaaacattatacaaa--------ttctataaaatt---------------------------tgaa------------gaattgtataaa------gatatatata-----------------tgccatgccaactctaggcatggaaaaaa--------------------ttaaaaggc--ttggaaatacatgccttaaagaatgaatagtgct--------tagatccatgg----------------------gtgatttattttcttatttttttctttttctgaatt---------ttcctcattttatttag s panTro1.chr19_random 2747890 735 + 57627672 TCTATGCATGAACTCTCCAGCCCCATTCCTTCCCACAGAGCTGTAATTC---TGCTTCCTCAGCTGCTATAACCACAAGGATAGGGTCAATGGGCTGATGCTGTGGAGGGCTGGACAACCCCCAATCCTCCCA--GAGGAAAGGAACTCAATGAA---------AGCTGGAGGAATAGAAAGCATGAGGTCACGTTTCAGTCATTTTTCTATTTATTAGTC----TCGGAGTGACT-GGGGCGCTGTGTTAAACGCTACTTGTGGATCATAAAAATACTTTAGAGGTGGGTATCAGTATGTCAGGTGCCT-AGAAATATGTGTAGCCATTAACCTAGAAAAAGCATTTCTGGGAAAGAGTTCTGTGGAAAC-AACCCAAATATGGAGCCATCTTCAAACATAAAGATACCTGACCCAGCATCATTTATAACTCTAAAATAAGCAAAGCTAAATTTTTCTCT-ATCAGGGAATGATAAAT--------------TATCCACAAGATCCTCTG-TTATTAAGTCTCTAAAGTGaatgaagtggca-----taaatatgcttataacatcagtggtt--aaaaaaagcaagataaaacattatacaaa--------ttctataaaatt---------------------------tgaa------------gaattgtataaa------gatatatata-----------------tgccatgccagctctaggcatggaaaaaa--------------------ttaaaaggc--ttggaaatacatgccttaaagaatgaatagtgct--------tagatccatgg----------------------gtgatttattttcttatttttttctttttctgaatt---------ttcctcattttatttag s mm5.chr11 83251329 767 + 121648857 TCTGTGAATAAACACTCCAAACCCATTCCTTGCCATGGAACGGAAACTCTCGTTATTTCTCAGCTTCTCTAACCACATGGA-AGAATA-----------GCTGTGGATGGTGGCACAACAGCCCCTCCTACCACCACAGTGAGGGACTGAGGAAAAGCATCTCCAGCTCGAGCAATGGGGAAGACGCGGTCACATTTAAGACATTTGTCCAATCATCAGCC----GCAAAGTGACT-AGGCCACTGGGTTGAACATTAGTTGTGGATCATAAAGATACTTCAAGTGTGGGCGTTAATATGTGAGAAGCCT-AAAAATATTTTT-TCCATTAAGCTAGAAATAGCCTTTCTAGGAAAGATTTTTGGGGAAAC-AACCCAAATGTAAAGCCATCTCTAAATATTGAGACAGCTGGTCCATTGTCA-TTATAACTTGAAACTAAAGAAA-CAAAACCTTTCACT-ATGAAAAAATTATAAATTAAAT--TATAGTATATACATTGGATTGCTTGTTTATGAAGCTCTTAAAAT---TAAAATGACA-----TAAGTACACTCATAACATTGGTGAT---AAAAATATCAAG---AAACATTGTACAAG--------TTTTACAAAG-----------------------------TGAA------------GAATTCTACAAATATCTGGAAATATACAG--------------TTTTTCACACCAAACCCAGGCATTATAAATAAATAATACTGGAATTTTTTTTTAAAAAATCACTAAAAATAAAAACTTTAAAGAATTATTAAAACT-TGTGAGATGGGCCTGTGA----------------------GTGGTTAATTTTCTTATATTT---------TGAGAT---------TTTTAAATTTTATTTGG s rn3.chr10 71760796 771 + 110733352 TCTGTGAATAAACACTCCAACCCCGTTCCTTGCCATGGGATAGAAACTCTTGTTGTTTTTCAGCTTTTCTGACCACATGGA-AGAATA-----------GCTGTGGATGGTGGTACAACAACCTCTTCTACCACCACCAGGAGGGGCTGAGTTAAAGCCACCC-AGCTCCAGCCATGGGAA-CATGAAGTCACATTTAAGACATCTGTCCTATCATCAGCC----ACGAAATGACT-AGGCCACTAGGTTGAACATTAGTTGTGGATCATAAAAATACTTCAG-TGTGGGTGTTGATATGTGAGAAGCCT-AAATATAGTTATGCCCATTAAGCTAGAAAAAGCCTTTCTAGAAAAGAGTTTTGTGGAAAC-AACCCAAATTTAAAGCCATCTTTAA--ATTGAGACAGCTGGTACGGAGTCA-TTATTACTCAGAACTAAAGAAA-CTTAACTTTTCACTAATGAAAGAATTATAGATTAAATTATATAGTACATACATTGGACTGCTTATTTATGAAGCTCTTAAAATTAATAAAATGACA-----TAAATATATTCATAACATTGGTGAT---AAAGACATTGAG---AAACATTGTACAAG--------TTTTACAAAG-----------------------------TAAA------------GAATTCTACAAATATTTGGAAATATACAG-------------TTTTTTTTCACCAAACCCAGGCATTATAAATAAATAATACTAGATTATGTTTTTAAAAAATCACTAAAAATAAAAGCTTTAAAGAATTATTAATACCTTGTGTAATGGGCCTGTGA----------------------GTGATTAATTTTCTGATATTT---------TGAGAT---------TTTCTTCTTTTATTTGG s canFam1.chr9 23353999 853 - 53642819 TCTATACACAAACTCACCAGCCCTG-TCCTTTCCACAGAGCTGACACTTCTGTGCTTCCTCAGCTATTCTAACCACACAGATGGGGTAGATGTGGTGATGCAGAGGATGGCA----------CATACCTGCCTTAGATGCAAGGAACTGAACCAAGGGATCCT-CACTAGGGGACTTGGAGGCATGAGATCACATCTCCATTGTTCATCCTGTCATCAGACAGTGACCGAGTGACTCGAAGCTCTGGATT-AACACCAGATGAGGATCAGAAAGACACATTAGATGTGGGTGTTCACATGTCAGGAGCCTAAAAAATATTTATACCTTATAACCTAGGAGATGCATTTTT-GGAAAGAGTTCTGAAGAAACAAACCCAAATACAGAGGCATTGTTAAACATAAAGATATCAGACTCAGCATCATTTAGGATTCTAAAATAAGAAAACCTAAATTCTCCTTT-ATTAGGGAATTATAAAG--------------TAAACGCCTGATTGTTTA-TTATTAAGCCCTTAAATGGAATGAAGTGAAATCGTGTAAATGTA-TCATAACAACAGTTATA--AAAAAAAGTAAGATGAAAAATTGTACAAGATGAAGAATtatatatatatatatatatatatatatgcatccacacatgaatggcaaatattgtaactatatatatatatatatatatatatacacatatatatacatatatatgtaAACACTAGGCATGGAAAAAA---------------------TAAAAAGC-ATTGGGAATAAATGTCTCAAAGAACCAATAGTAGC-TATATT-TGTTTCTATGGTCTACAGGTGATTAATTTTTTTGTGATTAATTTTTTTGTTTTCCCCTTTTTCTAGattaaaaaaaaattttttttttaaatGAG a score=20013.0 s hg17.chr17_random 768503 68 + 2618010 tgagactgtattaccttcttggtcagCCCACAAATTTATGAA-------------------------------------------------------------------------------------CTAATTTTGTTTTAAAACATTTCCAA s panTro1.chr19_random 2748625 68 + 57627672 tgagactttattaccttcttggtcagCCCACAGATTTATGAA-------------------------------------------------------------------------------------CTAATTTTGTTTTAAAACATTTCCAA s mm5.chr11 83252096 63 + 121648857 TGAGA---TATTATCTTCCT-GTCCTCTCACATACTCATGTA-------------------------------------------------------------------------------------CTCACTTAG-TTTAAAGCATTTTCAA s rn3.chr10 71761567 63 + 110733352 TGAGA---TATTATCTTCCT-GTTCACTCACATACTCAGGAA-------------------------------------------------------------------------------------CTCACTTAG-TTTAAAGCATTTTCAA s canFam1.chr9 23355006 153 - 53642819 TGAGAATGTTTTACCTTCCTGATTAGCTTACCAATTTATGAACATGTTTTATttatttatttttaaagattttatttatttattcatgagagacacagagagagagagagagagagagacaTTTCCCCACATTTTGTTTTAAAACATTCACAA a score=20231.0 s hg17.chr17_random 768571 42 + 2618010 CATCACTGGTTGAAAAGTGGGTTGTTGTCAGTTGTTTAATCT s panTro1.chr19 34971564 42 + 82489036 CATCACTGGTTGAAAAATAGGTTGTTGTCAGTTGTTTAATCT s mm5.chr11 83252159 42 + 121648857 TATCACTAGTTTAAAAGTAAGCAGTTATCCAGTGTTTTACTT s rn3.chr10 71761630 41 + 110733352 TATCACCA-TTTAAAAGTAAACAGTTATCAAATGTTTTACCT s canFam1.chr9 23355159 42 - 53642819 CATTACCATTTGGAAAGTAGGTTGCTATCAATTGTCTAATTT a score=100.0 s hg17.chr17_random 768613 1 + 2618010 G s canFam1.chr9 23355201 1 - 53642819 G a score=100.0 s hg17.chr17_random 768613 1 + 2618010 G s panTro1.chr19 34971606 1 + 82489036 G a score=5830.0 s hg17.chr17_random 768614 20 + 2618010 AAAGAAATTACTGATAAATA s panTro1.chr19 34971607 20 + 82489036 AAAGAAATTATTGATAAATA s rn3.chr10 71761779 20 + 110733352 AAAGAAGGTGCTTGTGAGTG s canFam1.chr9 23355202 20 - 53642819 AAAGAAATTTTTGATATATG a score=0.0 s hg17.chr17_random 768634 4 + 2618010 TGCT a score=873.0 s hg17.chr17_random 768634 3 + 2618010 TGC s panTro1.chr19 34971627 3 + 82489036 TGC s rn3.chr10 71761799 3 + 110733352 TGC a score=91.0 s hg17.chr17_random 768637 1 + 2618010 T s panTro1.chr19 34971630 1 + 82489036 T a score=24175.0 s hg17.chr17_random 768638 115 + 2618010 ACAGTTTCTGTTCAATGGGCTTTGCCAAAATGAAGTCTTGATTTCCCATTTCTTTGAACCATTTTAAGGATCCTGTACTATACTTACATAAATAATGCCAAA-CTGAAGCAGTTTT s panTro1.chr19 34971631 115 + 82489036 AAAGTTTCTGTTCAATGGTTTTGGCCAAAATGAAGTCTTGATTTCCCATTTCTTTGAACCATTTTAAGGATCCTATACTATACTTACATAAACCATGCCAAA-CCGAAGCAGTTTT s canFam1.chr9 23355222 115 - 53642819 AAAGTTTCTGTTCAATGGTGTTTGCTAAAATGAAGTCTTGATTT-CCATTTCTCTGAACTATTTTAAGGAACCTGTGTGATACTTACATAAATAATAGCAAATTCAAAGCAGTTTT a score=13472.0 s hg17.chr17_random 768753 69 + 2618010 TTCCTTATTCTTTTCAACACATAATTTCAGTGGTGTGGAAGGGTCTCTACCTTCTCAGCCAGAT-TATAT s panTro1.chr19 34971746 69 + 82489036 TTACTTATTCTTTTCAATACATAATTTCAGTGGTGTGGAAGGGTCTCTACCTTCTCAGCCAGAT-TATAT s canFam1.chr9 23355546 67 - 53642819 TCTCTTATGCTTTTTAATTCATAATTTCAGTGATGTGAAAGGCTCT---CCTTTTCAGCCAGATCTACAT a score=35832.0 s hg17.chr17_random 768822 276 + 2618010 GCTTTTTTTTTTCTTTTCCATACTTTGTTATTTTATTATTTTGCAATCAATCAGCATATCTCAT---TTTATAATGAGAAATAGATTTAGTTGGTTTTAATGATCTTTGTTTCTGAGATGCCCCTGGTCTCATGGGGGCAGGTAGAGTGTATGAACAGGTAATTGTA------------AA--------ACTCTTAGTAGAAAA------AGAAATGAAAGCTCAGAACCCCATGAGG--AAGAAGTGACCTTCCACCAGAGGG-TTGGGGAAGGCTTCATGGAAGGGATGGAACTTTAGTTGTGTCT s panTro1.chr19 34971815 296 + 82489036 GCTTTTTTTT--CTTTTCCGTACTTTGTTATTTTATTCTTTCACAATCAATCAGCATACCTCAT---TTTATAATGAGAAATAGATTTAGTTGGTTTTAATGATCTTTGTTTCTGAGATGCCCCTGATCTCGTGGGGGCAGGTAGAGTGTATGAACAGGTAATTGTAGCATTTAGCCGAAAGTGCTAGGACTCCTAGTAGAAAA------AGAAATGAAAGCTCAGAATCCCACGAGGGGAAGAAGTGACCTTCCACCAGAGGG-TTGGGGAAGGCTTCATGGAAGGGATGGAACTTTAGTTGTGTCT s mm5.chr11 83253574 237 + 121648857 GCTCTTTTTTTGTTTGTTTGTTTTTGTTTTTGTTTTTGTTTT------------------TGAT---TTTGT-----------------TTTTGTTTTAGTAGCCTTTATCTGT-AGAT-TCCATAGTCTAGCAGGGACAGATGAAGTAAGTGAATAGG-GATCATA------------GA--------ACT--TGGCAGGAAGTACCATGGGAAGAAAATCTCGGAG----GTGGGAGGGAGGAATAGCCTTCTGT---AGGA-CTCAGGGCGCCTTCATAGAAGGGATGCCATTCTCATAGGGTCT s canFam1.chr9 23355613 230 - 53642819 ----ATTTTT--CTTTTCTATCTTTTATGATCTTATTATTAG-TGTTTAATAAACATAATTCACAAATTCACA-------------------------------TTTGGACTCT-AGATACTCTCAGTCTGATAGGAATGGGTAGAGCATATAAACAGGTAACCACA------------GC--------ACT--TAGCAGAAAG---------------TGCTAAGATTCCTAGGAGG--GAGAAATGACCTCCTTCAAGAGAATTTGGGGAAGGCTTCACAGACGAGATGGAGCTTTGCTTGCGTGT a score=4813.0 s hg17.chr17_random 769098 69 + 2618010 GGATAACTGCCCGGGATTTAGGCATCTATAGATGGGTG--------GGCAGTGGAGGCCCAGCTGAGGCAGAGTCCT s panTro1.chr19 34972111 58 + 82489036 GGATAACTGCCCGGGATTTAGGCATCTATAGATGAGTG-------------------CCCAGCTGAGGCAGAGTCCT s canFam1.chr9 23355843 75 - 53642819 TAAAAGGTACACAGGTTTCAAACTCATATAAATGGAGGGTGGGGTTGGCAGGAGAGGTCAAGCC--AGCGTAGTCAA a score=43753.0 s hg17.chr17_random 769167 234 + 2618010 GGGTGTGACATTGTGG-CTCAGAGGAAAGAGGGGGTGCTTCAGTGGAGCTGCAGAGCAGTGGGGGTGAATATGGATGATAAAGGTAAATTG----GGACCAAACCAGGACAGGCCTTGAATTCCCCCCAAAGGGGTTAGAGTTGACACACTTGATGCTGGAGAACAACGGAG-------GACAGAAGCCAAGTGGGACCACGCCTTTGAAATTCTGTCCTTCCTGAGTGTCTTTAGACTTAGGTCT s panTro1.chr19 34972169 235 + 82489036 AAGTGTGACATTGTGGGTTCAGAGGAAAGAGGGGGTGCTTCAGTGGAGCTGCAGAGCAGTGGGCGTGAATATGGATGATAAAGCTAAATTG----GGACCAAACCAGGACAGGCCTTGTATTCCCCCCAAAGGGGTTAGAGTTGATACATTTGATGCTGGAGAATAACGGAG-------GACAGAAGCCAAGTGCGACCATGCCTTTGGAATTCTGTCCTTTCTAAGTGTCTGTAGACTTAGGTCT s mm5.chr11 83254522 222 + 121648857 GGGTATAACTTTGTGG---------------------GTTCAGTGGAATGACAGAGAATTTTGGG-GAACAGCGATGGTGAAGCTAAGTTGTGGTGGGTTGAACCAAGG-AGACTTTAAAATCTCTCCAGAGGAGTTGGAGTTCACAGGTTAGATCCAAGAAAACGGTGGAGGGCTTCAGGCATAAGCAAACCAAGGACACA-CTTGGGCAGTCTGTCCCTTCCAAGTGTCTACAGAGTCACTTTT s canFam1.chr9 23355918 217 - 53642819 AGGTGTGGACTTGCCAGTTCAGAGGGAGGAGTGAGTAGGTCAGTGTAGCTGCATAGTGGTGGGAC-AAACAGGGATGAGGAAGCTAAATTG---GGGGTCAAACAAGGA-GATCTTTGAAGTCCCCTCAAAAGGG-----GCTAGCACAGTGG-----TGGAAATAA------------GATATAAGCAAAGTGAGATCATATCTTAGGAATCCTGCCCTTCTT--GGGTCTGTAGGGTTCCTGCT a score=2242.0 s hg17.chr17_random 769401 3 + 2618010 TTT s panTro1.chr19 34972404 3 + 82489036 TTT s mm5.chr11 83254744 3 + 121648857 TTT s rn3.chr10 71766840 3 + 110733352 TTT s canFam1.chr9 23356135 3 - 53642819 CTT a score=2129.0 s hg17.chr17_random 769404 8 + 2618010 AATACACA s panTro1.chr19 34972407 8 + 82489036 AATACACA s rn3.chr10 71766843 8 + 110733352 GAAGCATA s canFam1.chr9 23356138 8 - 53642819 AAAACGCA a score=32298.0 s hg17.chr17_random 769412 92 + 2618010 TGGGCTCTGTTTCCATTCCACCCCAGTGATGGCTAGTGCCAGTCTTGAGGGAGGAGAAGCAGAGGCAAGATCAGGGGCCGTGGTAGGTTTCA s panTro1.chr19 34972415 92 + 82489036 TGAGCTCTGTTTCCTTCCCACCCCAATGATGGCTAGTGCCAGTCTTGAGGGAGGAGAAGCAGAAGCAAGATCAGGGGCCGTGGTAGGTTTCA s mm5.chr11 83257034 88 + 121648857 TGGATTCTGTTTCTGTTCT-TCTGGATAATTGCTAACACTGGTA--GCATGAGACAAAGCAAAGGCAAAGGCAAGGGCAATGGCA-GCTTCA s rn3.chr10 71766851 90 + 110733352 CAGGCTCGGTTTCCATTGC-TCCTGATGATGGCTAACGCTGGTAGCAAGAGACACAAAGCAATGGCAAGGGCAAGGGTGATGTTG-GTTTCA s canFam1.chr9 23356146 87 - 53642819 TGGGCTCTCTTCTCATCCCATTCCTAGGATTGCTAATGCTGGTTCTGAGAGAG-----GCAAAGGCAGGATCAAGGACAATGGCAGGTTACC a score=36294.0 s hg17.chr17_random 769504 88 + 2618010 TCAGAGCTTTGGCATCCACGTATCTTCCCCTATTGCTACCAATTCCAAATAAAGGTATCTCTGCCACTTGTCTCATTAGAAACCTACA-- s panTro1.chr19_random 2798693 88 + 57627672 TCAGAGCTTTGGCATCCACGTATCTTCCCCTATTGCTACCAATTCCAAATAAAGGTATCTCTGCCACTTGTCTCATTAGAAACCTACA-- s mm5.chr11 83257122 86 + 121648857 TCAGGACAGGGGCGTCCATGTTTCTTTCTAT-CTACTACCAATTCTAAAGAAAAGCATCATAATCACTCGTTTCATTGGAAACC-ACA-- s rn3.chr10 71766941 86 + 110733352 TCAGGACTGGGGCAGCCATGTTTCCTTCCAT-CTGCTACCAATTCTAAAGAAAGGTGTCACAATCACTTGTTTCGTCGGAAACT-ACA-- s canFam1.chr9 23356233 86 - 53642819 CTGGGGCTTCAGCATCCAAGTGTCTTCCTTTGTTCCTGTCAATTCCATA-AAAGGAGTC--TATCACTAGTTTCAGTGGAAACT-CTAGA a score=734.0 s hg17.chr17_random 769592 7 + 2618010 TCACAG------------------G s panTro1.chr19_random 2798781 7 + 57627672 TCACAG------------------G s mm5.chr11 83257326 25 + 121648857 ACACAGTCACCCTAACAACACCTAG s rn3.chr10 71767027 7 + 110733352 TCTCAG------------------G s canFam1.chr9 23356319 7 - 53642819 TCACAG------------------A a score=2188.0 s hg17.chr17_random 769599 22 + 2618010 CAATGACTCCTTCTCACC--------------------------------CCAC s panTro1.chr19_random 2798788 22 + 57627672 CAATGGCTCCTTCTCACC--------------------------------CCAC s mm5.chr11 83257351 54 + 121648857 AAGTTGCCCATTCTCAACAGGAACTTATCAGACCATGTGTTGTTATCTATCTAC s canFam1.chr9 23356326 22 - 53642819 CCGTGCCTCCTCCTCAGC--------------------------------CCGC a score=95903.0 s hg17.chr17_random 769621 263 + 2618010 CCTCTGCCTCTCAGCTCTC-GTTGATACCCTGAATTGCGTTCCGTCA-CTCACTTCTTAGGGGAACCCCCTCCATACTCGTGATTCCTTTTCTGGGAGCTGGCTTCTGTGAGTTGTGGAGAGTGAGAAAAGGAAATGGAAACTGCTGAATCAGTCAGTGTTC-TGATAAGGGACAT-----CCTCTATCTCTGTGATTACAGT-------ACAGTGTGTTATAATTAGTTACCTATGTAA-TTTGCTCTTCAAAAACCTAGACCATGTCCTGTTGATTT s panTro1.chr19_random 2798810 263 + 57627672 CCTCTGCCTCTCAGCTCTC-GTTGATACCCTGAATTGCGTTCCCTCA-CTCACTTCTTAGGGGAACCCCCTCCATACTCGTGATTACTTTTCTGGGAGCTGGCTTCTGTGAGTTGCGGAGAGTGAGAAAAGGAAATGGAAACTGCTGAATCAGTCAGTGTTC-TGATAAGGGACAT-----CCTCTATCTCTGTGATTACAGC-------ACCGTGTGTTATAATTAGTTACCTATGTAA-TTTGCTCTTCAAAAACCTAGACCATGTCCTGTTGATTT s mm5.chr11 83257407 260 + 121648857 CTTCTGTCTCCCAGTCATC-----AGCCCCTCCCCCACCACCATCTT-CTCACTTCTTA-GGAAGCCACCTTCATACCTATGATTCAGTTTCTGAGGGCTGGATTCTAAAAGCTGGGGAAGAT-AGAAGGGGAAATGAATGCTTCTGTGTCA-TCACTTTTC-TGGCAATGGGCAC-----TTCCTACTTCCAGAATTCCGGCCCGCACTGCAGTGGGTC---CCCAGTCATCTATGTAA-AATTTTTGTTTTAAATTTAAATGATGCCTGGTCTGTTT s rn3.chr10 71767260 259 + 110733352 CTTCTGTCTCCCAGTCACC-AACCCCTTCCTACATCACAAT-------CTCACTTCTTA-GGAAGCCACCTTTATACCTATGATTCAGTTTCTGAGGGCTGGATTCTAAGAGCTGGAGAAGGT-AGAAGGGGAAATGAAAACTGCTGTATCA-TCACTTATCTTGGCAATGGATAC-----TTCCTACTTCCAGAATTATGACCTTCACTGCAGTGGGTC---TCCATTCATCTATGTAA-AGTGTTGTTTTAAAATTTAAATGATGTCTGGTCTGTTT s canFam1.chr9 23356348 277 - 53642819 CCCCTTTGCCTTAGCTCTCAGCTGACACCCTGAACTGCACTCCCTCAGTTCACTTCTTG-GGGAACCCCCTTCACATTTGTGATTCAGTTTCTGAGAGTTGGATGCTATGAGTTGGGAGGGCCAGAAAAAGGAACTGGAAACTGCTGAATCAACCCCTTGGC-TAATAATGGACCTTATTATATCCTCTTCTATAATTACAGAACCTGCCACACTGCATTGTAATTAGTTACTTATGCAATTTTTCTCTCCAGAAATTTAGACCATGTCCTGTTAATTT a score=546.0 s hg17.chr17_random 769884 1 + 2618010 T s panTro1.chr19_random 2799073 1 + 57627672 T s mm5.chr11 83257667 1 + 121648857 T s rn3.chr10 71767519 1 + 110733352 T a score=38116.0 s hg17.chr17_random 769885 435 + 2618010 ATTTTAGTTTCTTTTTCTCAAGAAATTTATAGTTTAATAAAGGCAATGTGGGAGTGTGGAAACAAACTTTGATTTTGTACTAATGATAGATTAGCAACTACACAAATTTTAGTTCacaataagtaatatttatcgagtgatcaccatgtgctgatttccataatatggatttacatgtttgaactgtcttcaaaacaaccctatgatttagttaccagtatactttcttagttgaacaggtgaagaaaccaaagtaaatagaggttaagcaattttccgaaggccgtaaagctgatgactagcagagcagggattcacatccaggtagtctgactctagGTACCACATGCTACACATCCTGTACCACAACTTATTATATTTGATCCTCATACCAATCCTATAATGGTAGATTTTTTAGAGTGTCTTCTCAGATTG s panTro1.chr19_random 2799074 435 + 57627672 ATTTTAGTTTCTTTTTCTCAAGAAATTTATAGTTTAATAAAGGCAATGTGGGAGTTTGGAAACAAATTTTTATTTCGTGCTAATGATAGATTAGCAACTACACAAATTTTAGTTCacaatatgtaatttttattgagtgatcaccatgtgctgatttccataatagggatttacatgtttgaactgtcttcaaaacaaccctatgatttagttaccagtatactttctcagttgaacaggtgaagaaaccaaagtaaatagaggttaagcaattttccgaaggccgtaaagctgctgactagcagagcagggattcacatccaggtagtctgactctaggtaccacacgctacacgtcctgcaccacAACTTATTATATTTGATCCTCACAACACTCCTATAATGGTAGATTTTTTAGAGTGTCTTCTCAGATTG a score=546.0 s hg17.chr17_random 770320 2 + 2618010 TA s panTro1.chr19_random 2799509 2 + 57627672 TA s canFam1.chr9 23356625 2 - 53642819 TA a score=53953.0 s hg17.chr17_random 770322 115 + 2618010 AACCAACTCCAGACCATGTCTCGTTGGTTG-ATTTA---AACCAAATCCTAGTACATGATGATTATAACATGATGAA-CCTCCTGACCTAGTCTCTATCTCTTATTATTGTGTTCTTTAT s panTro1.chr19_random 2799511 116 + 57627672 AACCAACTCCAGACCATGTCTCGTTGGTTG-ATTTA---AACCAAATCCTAGCACATGATGATTATAACATGATGAGCCCTCCTGACCTAGTCTCTATCTCTTATTATTGTGTTCTTTAT s mm5.chr11 83257668 119 + 121648857 AACCAAATTCAACCAACATCAAGTTAGTGGCATCCAGATAACCAAATCCTGGCACACGATGAGTCTAACTTGGTGGG-TCTCCTGACCTAGTCTCTAATTTGTAGAATTTCGTTCTTTTT s rn3.chr10 71767520 119 + 110733352 AACCAAATTCAGCTCACGCCTAGTTGGTGGCATCTAGATAACCAAATCCTAACACAGGATGACTCTAACATGGTGAG-TCTCCCGATCTAGTCTCTAATTTGTGGAATTTCATTCTTTTA s canFam1.chr9 23356627 115 - 53642819 AACCAAATTCATATCATGGCTTGTTGGTTA-ATTTA---AACCAAATGCTAGCCCGTGATGATTATAGCAGGATGAA-TTGTCTGCCATTATAGCTATTCCTTATATTTTTGTTCTTTTT a score=78823.0 s hg17.chr17_random 770437 212 + 2618010 AATAAAGATGATTTATTGAATATATAATTCTATCTCAGTGTTTATATATTTGTAAGACTTTCTCTATCAATCCCCAAACCAGG-AAATAGCCC-TTTGC--CATGTGTTTT-GGCTTGGAGTAAAATA-----TAGTTGCACGCATAGCATTTGCTTAATTTATATACGTTGAATGAATAATGTAAGGGAGATGTAGGACGGGGTTG--AGTTGGGAGGGTCTT s panTro1.chr19_random 2799627 215 + 57627672 AATAAAGATGATTTATTGAATACATAATTCTATCTCAGTGTTTATATATTTGTAAGACTTTCTCTATCAATCCCCAAACCAGGAAAATAGCCCTTTTGC--CATGTGTTTTGGGCTTGGAGTAAAATA-----TAGTTGCACGCATAGCATTTGCTTAATTTATATACGTTGAATGAATAATATAAGGGAGATGTAGGACGGGGTTG--AGTTGGGAGGGTCTT s mm5.chr11 83258065 195 + 121648857 AATGAAGGTAATTGATGGGATATGAGAT----CCTTAATGTTTATAGAATTTTAAGACTTTCTGCATCAATCCCCAAACCAGG-AAATAGCCC-TTTAC--CATGTGTTTT-CACTTGGATTGAAAAGATGACTTATTATACACATAGTACATGCTTAA--CACACACATTGCGTAGGTCATGGAA---------------GGGTTG--AGTTGGCA-GATGTC s rn3.chr10 71767639 191 + 110733352 AATGAAGGTAATTGATGAGATATGAGAT----CCTTGGTGTCCATAGAAGTTTAAGACTTTCTGCATCAGTCCCCAAACCAGG-AAATGGCCC-TTCAC--CA----TTTT-CACTCGGTTGGAAAGATGACTTGCTTATAAGCATAGTACGTGCTTAA--CACACACATCGAATGGGTCATGGAA---------------GGGTTG--AGTTAGAA-GATGTC s canFam1.chr9 23356742 219 - 53642819 AATAAAGGTGCTTTACTGAATATAAAATTTTATCTTAGTGTTTATATATTTGTAAGCCTCTCCATATCAACCCTCAAATCAGA-AAATAGCCC-TTTGTTGTATGTGCTTT-TA-TTGGATTGGAAAATAATATACTTGTGTGCAAAGTATGT-CTTAATATGTATATGTTGAATGACTAATATAAGGGGATCTTCAGGTGGCTTTGTTGGTTGGGTGGGCCTT a score=63052.0 s hg17.chr17_random 770649 189 + 2618010 AGAcatttcctaggtggtaa---attgatgttcccagttgaaatgacgtacccagggtcatgcagGTGGAATTGGTCAGTTTTATATTCCACtgtctgtgttagttac-cagtgtatctccagtgataaccacaatgcctgacatatag--tgaagcttaatacctatttga----tgaataaataaatCACTGATTTG s panTro1.chr19_random 2799842 186 + 57627672 AGACATTTCCTAGGTGGTAA---ATTGATGTTCCCAGTTGAAATGACGTACCCAGGGTCATGCAGATGGAATTGGTCAGTTTTATATTCCACtgtctgtgttagttacacagtgtatctccagtgataaccacagtgcctgacatatag---gaagcttaatatctatttga-----gaataaa-AAATCACTGA-TTG s mm5.chr11 83258260 174 + 121648857 AGAAATATTCTAGGTGACAACATATTGATGTTTCCAGGAAAAATGGTTTGCTT-GGGTCACACA--TGGACCTGGTCATCAATACACTTCATGGTCTGTGTTGTTTTC-CATTGTATCTCCAACAA-AGCTACAAGGCCTAGCACATAGTGTGAGGC--------------------AAGTGGACAAATCACAGATTTG s rn3.chr10 71767830 160 + 110733352 AGAAATGTTCGAGGTGCCGG---ATGGATGTTTCCAGGAAAAGCAGCTTGCTT-GGGTCACACA--CAGACCTGGTTAGCAATACACTTCACCATCCGTGCTATTTTC-CACTGCATCTCCA---------ACAAGGCCTGGCATGTAG--TGAGGC--------------------AAGTGAACAAATCA-TGATTTG s canFam1.chr9 23357522 186 - 53642819 AGAAATTTCCCAGGTGGTAA---ATTGGTGTTCTCAG-----GTGACTTTCCCGGGATCACACAGATGATATTGGTCAGTTTTATGATTCACTGTC--TGTTAATTGG-CAGGTtatctccagtgataaccacaatgcctgacatatag--tagagcttaatacgtatttggtgaatgaatgaatACAGTGCTAATTTG a score=753.0 s hg17.chr17_random 770838 2 + 2618010 AC s panTro1.chr19_random 2800028 2 + 57627672 AC s mm5.chr11 83258434 2 + 121648857 AT s canFam1.chr9 23357708 2 - 53642819 AC a score=282.0 s hg17.chr17_random 770838 3 + 2618010 ACT s canFam1.chr9 23357708 3 - 53642819 ACT a score=0.0 s hg17.chr17_random 770840 1 + 2618010 T a score=91.0 s hg17.chr17_random 770840 1 + 2618010 T s panTro1.chr19_random 2800030 1 + 57627672 T a score=15023.0 s hg17.chr17_random 770841 63 + 2618010 AACAATATGTGTTATGCCTGAACTCTCACTATGGAGTTGAAATACTAATGGGAAGGGTAGGAT s mm5.chr11 83258436 61 + 121648857 --AAAGATATCTTCTGCATTAAAATGTATCGAAGAGCTGAAATACTAATGGGAGGAGAAGAAT s rn3.chr10 71767990 63 + 110733352 AGAAAGACATCGTATGCATTAAAACACATCATAGAGCTGAAATACTAGCGGGAGGAGAAGGAT s canFam1.chr9 23357711 63 - 53642819 AACAGTGTGTGTTATGCCCAAAGTCCCAATGTGGAGTTGAAAGACTAACAGGAAGGAAAAAAT a score=726.0 s hg17.chr17_random 770841 2 + 2618010 AA s panTro1.chr19_random 2800031 2 + 57627672 AA s rn3.chr10 71767990 2 + 110733352 AG s canFam1.chr9 23357711 2 - 53642819 AA a score=168.0 s hg17.chr17_random 770904 4 + 2618010 AAGA s canFam1.chr9 23357774 4 - 53642819 CAGA a score=2987.0 s hg17.chr17_random 771091 77 + 2618010 AGAATCAGGAGAGACAGTCAGAAGCGTGACAGGTCTCCAGAGCCAAGGAAGAATTTTTAAATAAAATGAGAATTGAa s canFam1.chr21 5186161 64 + 53028000 AGAATCAGGAAAGA-------------AATAGGTCTCAGAAGCCAAGGAAAAATCTTTAAAGAAGATGAAGACTCTA a score=4819.0 s hg17.chr17_random 771473 96 + 2618010 GGTCCCAATAAAGATACAATTTGAAAGAGAAATGTAAATTAAACTTATATAAAGAAGTTTTCAGTAACTTGGATCTAAAAGTTTATGATTTGCTTT s canFam1.chr21 5186225 96 + 53028000 GTCCCCAAAGAAGAAGCCATTTGAAAGAGAAATGTAAACTATTTTTTTATAAATAATTCTGCATTAATTTGGATCTGGAAAATTACTATTTGCTTT a score=615.0 s hg17.chr17_random 771681 8 + 2618010 aaagaaaa s panTro1.chr19_random 16333051 8 + 57627672 AAGGAAAA a score=-5.0 s hg17.chr17_random 771689 3 + 2618010 gag s panTro1.chr19_random 16333059 3 + 57627672 GAG s mm5.chr11 83258497 3 + 121648857 TAC a score=906.0 s hg17.chr17_random 771692 3 + 2618010 aaa s panTro1.chr19_random 16333062 3 + 57627672 GAA s mm5.chr11 83258500 3 + 121648857 AAA s rn3.chr10 71768056 3 + 110733352 AAG a score=237216.0 s hg17.chr17_random 771695 847 + 2618010 AA--GGCCATGGTGTC-ACAGTTTT-GATCTTTGGGAAA-CTGACCACCCAAGATT-CCTTAGGTGGTGGTGACAGAAAGTAGACAGCAGTCAACACCGTGGAC-CCTTCAGCATGGA-GGGATTTGATTTGTGTCCCAGCGT-TCTGGCTCATTTCAGCCTCTGCGAGGCCCCACCTCAGTCCAGCAGAGCGTCCCAGTCCACAG-TGCGGGGAATCATGGCTGGGCAGTTTGTCCTCTGCGGCGTCTTTGCCTTGCGCTGCTCAGCTTGCCTCCCCACTGTGTGCTGCTGCCT-GTGCTC-------TCCAGTGCGGA-GCATTGCTTTCCTTCCAGATTCTGGCCCC---GAGGCTCCACTTCCCCAAGTGTCACCCTCCTCTATCTCCTTTGGCAGCAGGCGCCCCAGGGATGGGTTCACTGATGATGACATCCTGTTT-GGCCCAGCTTTGGCCTCCTTTTCTCATATGTGGTCTGCGTGGTCAGGTTGCAGCAGGTGTGGGCCCCACTTTTCATGCAGGCAGAAGCAGCAGCCTGG-----AGTCCCCTGTCTAGTATCTTAGACAGACAATGTCTCATTGACACAG----CCCCTTCTTTCTGCAGCCAGCCCCTTGTTTCCCGTCCTGAGTCCT---TGTTATT-TTCTCTAGC-------CATTTCT-------------------TGCATGTGTG--------------------------CAGTAGGTCAGGGCG-------TATGTCTTGGTactggatccgatccctctcctggtcccttgccccttcttccatattctctacccaataaaaagtgcctcttcctatcagtcttccagtccagaaagctgagagtcacccttgtctcctctttctctgtcatctc--ctacagctattcaatcaccaactctagtctacattcaattttac s panTro1.chr19_random 16333065 852 + 57627672 AAAGGGCCATGGGGTCCGCAGTTTTTGATCTTTGGGAGGGCTGCCCACCCAAGGTTTCCTTAGGTGGTGGTGACAGAAAGTAGCCAGCAGTCAACACCATGGAC-CCTTCAGCATGGA-AGGATTTGATTTGTGTCCCAGCGT-TCTGGCTCATTTCAGCCTCTGCGAGGCCCCACCTCAGTCCAGCAGAGCGTCCCAGTCCGCAG-TGCAGGGAATCCTGGCTGGGCAGTTTGTCCTCTGCGGCGTCTTTGCCTTGCACTGCTCAGCTTGCCTCCCCACTGTGTGCTGCTGCCT-GTGCTC-------TCCAGTGCGGA-GCATTGCTTTCCTTC-AGATTCTGGCCCC---GAGGCTCCACTTCCCCAAGTGTCACCCTCCGCTATCTCCTTTGGCAGCAGGCGCCCCAGGGATGCGTTCACTGATGATGACACCCTCTTT-GGCCCAGCTTTGGCCTCCTTTCCTCATATGTGGTCTGCGTGGTCAGGTTGCAGCAGGTGTGGGCCCCACCTTTCATGCAGGCAGAAGCAGCAGCCTGG-----AGTCCCCTGTCTAGTATCTTAGACAGACAATGTCTCATTGACACAG----CCCCTTCTTTCTGCAGCCAGCCCCTTGTTTCCCGTCCTGAGTCCT---TGTTATT-TTCTCTAGC-------CATTTCT-------------------TGCATGTGTG--------------------------CAGTAGGTCAGGGCG-------TATGTCTTGGTACTGGATCCGATCCCTCTCCTGGTCCcttgccccttcttccatattctctacccaataaaaagtgcctcttcctatcagtcttccagtccagaaagctgagagtcacccttgtctcctctttctctgtcatctc--ctacagctattcaatcaccaactctagtctacattcaattttac s mm5.chr11 83258503 777 + 121648857 AA--GACCATCGAGGC-AAGATTTT-CATTTTTCAGAGG---AAACA-CCAAGATC-AATTAGGTAGGCAGGACAGAAGGTAG-----------CACAATGGACGCCCTCAGTGTGGA-CTGGCTTAATCTATGTCCTAGATT-TCCAGTTCATTCCAGCCTTCTCAAGGCCCCACCACAATCCAGGAGAATATCCTA-TCTATAGATCCAGGGAGTTCTGGTGGGACAATTCATCTTCCTTGTCG---TTGCCTCTGACTGCTCCAC-TACCTCCTCTC--------ACTTCTC-ACGCTTCCCACAATCCAGCTCTGC-CTATTGTTTTCTTTCTAG----TGTCCCCACTGAGGTTCTACTTCCCTGGATACCAGTCTCAGC--TCTTGTTTGACATCACCAGCCCCATGAGTGGGCTAACTAATGATAACACTCTA----AGTCTACGTCTGGCCTTCCATTC-----------------------------------------------------AAAGACAGAAACAGCATCCTTGGAGACAGGCACCTTTCTCACATCCAGG--AGACAAGGACTCATCGATGCCA----TCTCTTCCTCTTGCAGTGAGCCCTTCATTTCCTG-CCTGCGTTCA---TGCCATT-TCCTCTGG----------------------------------TGTGTGTGTGTGTACACGAATGCACATGATTATCCACAGTAGATTAGATTGTATATTATATATCTTGATACTGGACTCCACCCACCCCCTGAATCCTGG-------------ATCATCTATTCCAGGAAAACATCCTGTCCCT-TCAAGCTTCCAAATCAGGAACCAGGAAGTCACAC-TGTCTGCTA-----CCACAACTTC--CTACATCTATTTAGTCACCTACACTAGTCTATACTGGGAATTAA s rn3.chr10 71768059 834 + 110733352 AA--GACCATAGAGGC-AAGATCTT-CATCTTCAGGGGA----AACA-CCAAGATC-AGTTAGGTAGTCAGGACAGAAAGTAA-----------CGTAGTGAACAACCTCGGTGTGGA-GGGCCTTAATCTATGTCCTAGATT-TCTAGTTCGCTCCAGCCTTCTCAAGGCCTCACCACAGTCCAGGAGAGTATCCCA--TTGTGGATCCAGGGAATTCTGGTGGGGCAACTTATCTTCCTTGTCA---TTGCCTCTGACTGCCCCACTCACCTCCTCTC--------ACTCCCCAACGCTTCCCACCATCCGGCCCTGC-CTATTGGTTTCTTTTTAG----TCTTCCCACCAAGGATCTACTTCCCTGGGTACCAGTCTCAGC--TCTTGTTTGACATCAGCAGCCCCATGAGTGGGCTAACTGATGATAACATTCTTGTTAGGTCTACTTCTGGCCTTCTAT-----------------------AGGTTGCAGTAGGC-CAGATCTCATCACTC--AAAGGCAGAAACAGCATCCTGG-AGACAAGCCCCTTTCTCATATCCAGG--AGACAAGGACTCAATGATGCCATCCCTCCCTTCCTCTTGCAGTGAGCCTTTCATTTCCTG-CCTGCGTTCT---CACCATT-TCCTCTGGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG--TGTGTGTGTGCATGTGATCATCCATGGTCGATCAGGTTGTATATTATATATCTCGATAATGGACTCCATCTACCCTCTGAATCCTGG-------------ATCATCTATCTCATGAAAA----------CTTTCAAGCTTCCACACCAGAAAGCAGGAAGTCACAC-TCTCTACTC-----CCACAACTTC--CTACATCAATTCAGTCACCGACACTAGTCTGTACTGGAAATTAA s canFam1.chr9 23357778 763 - 53642819 AA--GGTCCTGATGTC-GAAGTCTT-TATCTTTGGTAGT--AGAGCACCCAAAATC-TCTTA----GTGATGACAGAAAGTAGCTAGCAGTCAGCATGGTGGAT-CTTGCAGTTTGGAGGGGGCTTACATTGTGTCCTAGCTTCCCTGGCTCATTCTAGCCTCTTTGAGGTCCCACCCCTGTCCACCAGAGTATCCTA-GCCATGAGTACAAGGTATTTGGGCAGAACAATTCATGTTCTGCAACATCACTGGCTGTC-CTGCTCTGCTCACATCCTCAC-------TGCTTCCC-ATGC---------CCTGGACCTGCTGGATTGGTTTTCCTCCAGTTTCCAGCTCT---GTGGCTCCGCTTCCTTGGGCATCAGTTCCAGC--------------TCAAGGG---AAATGATGGGCTGGCTGGCAATGATAACTTATTT-GACCCAGCCTTGGCTCCCTTTTTTT----------------------------CAGGCGT-GGCCCTACCTTTCAGGTAGGCGGAAACTATGTCCTGG-----AGGCCCCTTTATAGCATTCTAGAGACACAATGTCTCGTTGATGCAG----CCCCTTCTTTCTGCAGCCTGGCCC---TTTGCAATCTTGAGTTCTTCATGTCATTCTCCTCTGGC-------CA------------------------TTTGTATGTG--------------------------CAATAGATCAGGGCA-------TACCTCTTGGTATTGGATTAGATTCATC-CTTGTGCCcctgctcccccttctatgttcttgactcagtaaaaaccatcctcacctatgaagcttccatgctagaaacctgggaatcaccc-tgactcctc-----cctccccctcatctgcatctattg-----------------catatttgaaatgaa a score=2012.0 s hg17.chr17_random 772542 25 + 2618010 gtgcatctgcctctcaccattccca s panTro1.chr19_random 16333917 25 + 57627672 gtgcatctgcctctcaccattccca s mm5.chr11 83259280 25 + 121648857 AACTGAGGGGCTGTGGCAGTGGGCA s canFam1.chr9 23358541 25 - 53642819 gtagatctccttctcactgttccta a score=14969.0 s hg17.chr17_random 772567 79 + 2618010 ctgcctctgtcttaggtcaggttcttatggattctcaccatgacaactagaagagggtcctagcaactgctttttcttc s panTro1.chr19_random 16333942 79 + 57627672 ctgcctctgtcttaggtcaggttcttatggattctcaccatgacaactagaagagggtcctagcaactgctttttcttc s canFam1.chr9 23358566 79 - 53642819 ctgccactgcctggggtccaaccctcatcatttcttgccatgacagctgtaagagtgtcctgtcaactgtgtttccttc a score=1830.0 s hg17.chr17_random 772646 32 + 2618010 cacttttgtctctaatttatttatttattttg s panTro1.chr19_random 16334021 27 + 57627672 tACttttgtctc-----tatttatttattttg a score=23524.0 s hg17.chr17_random 772678 285 + 2618010 agacaaggtctcactctgtggcccaggctggagtgcaatggctcgatcttggctcactgcaaccttggtctcccagg-tcaagcaattcttgtgtctcagcctcccaagtagctgggattacaggcatgtggcaccacacccagctaatgtttt-gtatttttcgtggagacggagtttcaccatgttggccaggctggtcttgaactcctggcctcaagtgatctgcctgcttcggcctcccaaagtgctgcgattgattacaggagtgagtcaccacgcccggcc s panTro1.chr19 34975996 287 + 82489036 agacaaggtctcattctgtggcccaggctggagtgcagtgactcgatcttggctcactgcaaccttggcctcccaggctcaagcaattcttgtgcctcagccttcctagcagctgtgattacaggcatgtgccaccatgccctgctaatttttttgtatttttcgtggagatggggtttcaccatgttggccaggctggtcttgaactcctggcctcaagtgatctgtctgcttcggcctcccaaagtgctgggattgattacaggagtgagtcaccacgcctggcc a score=8176.0 s hg17.chr17_random 772963 38 + 2618010 tagttttgtctctttttaatctatctcaccatacagca s panTro1.chr19 34976283 38 + 82489036 TAGTTTTGTCTCTTTTTAATCTATCCCACCACAGAGCA s canFam1.chr9 23358645 38 - 53642819 tagttttgcctctctttgatctgtcccatcacatggca a score=1255.0 s hg17.chr17_random 773001 7 + 2618010 tccaata s panTro1.chr19 34976321 7 + 82489036 TCCAACA s mm5.chr11 83259711 7 + 121648857 GCCAAAG s canFam1.chr9 23358683 7 - 53642819 cccgaag a score=8010.0 s hg17.chr17_random 773008 18 + 2618010 tacttttgctaaag------ctca s panTro1.chr19 34976328 18 + 82489036 TAATTTTGCTAAAG------CTCA s mm5.chr11 83259718 18 + 121648857 AGATCTTGCTAAAG------CTCC s rn3.chr10 71769343 24 + 110733352 CAGCTTTGCCAAAGAGATCTCTCT s canFam1.chr9 23358690 18 - 53642819 tgattttgctaaag------ttca a score=89040.0 s hg17.chr17_random 773026 334 + 2618010 aatcagtctctgtttctctccttttaaaatcttgcaaacattctgcatcgtttctgacatgaaatggaagctt---ctctgtaacctgacccctgtctacctctctggcctcgtGACTTG-CCTGCTGAGACTTCCTGAAAACCAAGACCCAGCCTTTTTGCACTACTTGTGGTTCCTTAAATGTGCAGCTCTCTACCTTGCTTTTAATGAAGGAGGTGCCCACTTGGTAAAGCACAATTTCACCTTCTTGTAAACCACAGGGCAGAGTGAAATGCTATGAATGTGGGCACATCCCGTGACAGCTGCAGGGATTCATATTTAGAACA-----------------------------------ATTAAGGAAAA s panTro1.chr19_random 2802304 368 + 57627672 AATCAGTCTCTGTTTCTCTCCTTTTAAA-TCTTGCAAACATTCTGCATCGTTTCTGACATGAAATGGAAGCTT---CTCTGTAACCTGACCCCTGTCTACCTCTCTGGCCTCGTGACTTG-CCTGCTGAGACTTCCTGAAAACCAAGACTCAGCCTTTTTGCACTACTTGTGGTTCCTTAAATGTGCAGCTCTCTACCTTGCTTTTAATGAAGGAGGTGCCCACTTGGTAAAGCACAATTTCACCTTCTTGTAAACCACAGGGCAGAGTGAAATGCTATGAATGTGGGCACATCCCGTGACAGCTGCAGGGATTCATATTTAGAACATCCCGTGACAGCTGCAGGGATTCATATTTAGAACAATTAAGGAAAA s mm5.chr11 83259736 280 + 121648857 AGACATTC-----TTCTCTTCCTCGGATGTTCTTTAATTCCACTTCATTGTTTCCA--GTGACGTGGAAACTT---CCCTGAGGCCTGGCCCCTGCCTGCCTACCTGGCTTTGAATCTTG--TTCTTCAGACTCACTGACCACCAAGACCACGCCTCTGCGTACTGC-----------------GGCAGC---------TGTTTGTGATGATG--AGCACCAGCTTGGCAGGGC------------------AAAACACAGGGCAGAGTGAAGTACCGTGGGCACAGGCGCATCCCATAGCAGCCACGGATAGCCATATTTAGGACA-----------------------------------AATAAAGAAAA s rn3.chr10 71769371 257 + 110733352 CCCCAGTC-----TCCTCTTCCTCGGGTGTTTCTCAACTCCACT-TATTGTTTCCA--GTGACATGGAAACTT---CCCTGTGACCTGACCTCTGCCTGCCTACCTGGATTTGAACCCTG--TTCTTCAGACTTGCT---------GACCATGCCTCTGTGAATTGT-----------------AGCAGC---------TGTCTGAGATG-----AACACCAGTTTGGCAGGGCAAAGCATCTCTTTTCTGCAAAGCATAGGGCAGTGTGAAATACCATG----------------------------GGCATCCATATTTAGGACA-----------------------------------AATAAAGAAAA s canFam1.chr9 23358708 316 - 53642819 aatcattgtctatctctgtctgttgaaaatgtttcaAATACTCTGCATGGTTTCCAGCATGGAATGGAAGCTTTCCCTCTGTGAACTGACCCCTGCCTCCCTCTTTGGTCT-GTCTCTTGCCACCTTCAGACTTCCTGGAAATTTAGTC---AGCCCTCTGAACGACATGTAATTCTTTAAAAGTTCAGGCCTCTTTTCTGCTTTCTATGAATAAGGTGTCAGCT------------------CATCCTGGGAGATCACAGGGCGGAGTGAAACCCTAGAAGCATGGGTATGTCCCATGACAGCAGTGGAGATTAACATTTAGAACA-----------------------------------AATAAGGAAAG a score=2485.0 s hg17.chr17_random 773360 13 + 2618010 ACATTATGTAATT s panTro1.chr19_random 2802672 13 + 57627672 ATATTATGTAATT s canFam1.chr9 23359024 13 - 53642819 TCATTATTTAATT a score=31612.0 s hg17.chr17_random 773373 341 + 2618010 TCCCATCTTTTCTtttcttcttcttgttgttgtttgtctttttttgacagagtctctctccgtcgcccaggctggagtgcagtgggggcgatctcagctcactgcaacctctgcctccccttccccctccccctgggttcaagtgattctcctgcctcagcctcccgagtagctgtgattacaggcatgtgccaccatgcctggctaatttttgcatttttagtagagacagggtttcaccatgttggccaggatggtcccgaactggcctcaagtgatctgcccacctcagcctcccaaagtgctacaattataggcatgagccagcaaacccagcATGT s panTro1.chr19_random 2802685 341 + 57627672 TCCCATCTTTTCTTTTCTTGTTGTTGTTGTTGtttgtttttttttgacagagtctcgctccgtcgcccaggctggagtgcagtgggggcgatctcagctcactgcaacctccgcctccccttccccctccccctgggttcaagtgattctcctgcctcagcctcccgagtagctgtgattacaggcatgtgccaccatgcctggctaatttttgcatttttagtagagacagggtttcaccatgttggccaggatggtcccgaactggcctcaagtgatctgcccacctcagcctcccaaagtgctacaattacaggcatgagccagcaaacccagcATGT a score=890.0 s hg17.chr17_random 773714 6 + 2618010 AATTCC s panTro1.chr19_random 2803026 6 + 57627672 AATTCT s rn3.chr10 71770121 5 + 110733352 AATTA- s canFam1.chr9 23359037 6 - 53642819 AATTCC a score=152987.0 s hg17.chr17_random 773720 446 + 2618010 CCAAATTTTCTAAG---------------------AAAAAGAGAGAAATCCATGGATCTTGCTGTTCAAAGACATGCAAAATGCACAACAGAAAAGACATTTTACACCAGAATAACAGAAACTTTGGTTGTTATGCTTTTAACATAAATTTATAATACAGCACACTTCCCTTTTCTGATTTATTCATGctctagagccagactt-cttggcttcagtttcaaatctgctgtgtgtcagctgtgtgtttttccataagttacgtacctctctgtgcttcagtttcttcgtgtgtgaaaggggatagttacagcacttaactcagagg----------gccactgtgaggattaaatgcattaatacct------------------atgaaaggccgagaacattactggt-------tcatagtaagtgctAT------------CTACTATTA-TTACTATTACCATTTT----------------------------------ATTATTATTGAA---------------------------------ATATTTCAATACCTCCATTTTATATCCGAAACA s panTro1.chr19_random 2803032 446 + 57627672 CCAAATTTTCTAAG---------------------AAAAAGAGAGAAATCCATGGATCTTGCTGTTCAAAGACATGCAAAATGCAAAACAGAAAAGACATTTTACACCAGAATAACAGAAACTTTGGTTGTTATGCTTTTAACATAAATTTATAATACAGCACACTTCCCTTTTCTGATTTATTCATGctctagagccagactt-cttggcttcagtttcaaatctgctgtgtgtcagctgtgtgtttttccataagttacgtacctctctgtgcttcagtttcttcgtgtgtgaaaggggatagttacagcacttaactcagagg----------gccactgtgaggattaaatgcattaatacct------------------gtgaaaggccgagaacattactggt-------tcatagtaagtgctAT------------CTACTATTA-TTACTATTACCATTTT----------------------------------ATTATTATTGAA---------------------------------ATATTTCAATACCTCCATTTTATATCCGAAACA s mm5.chr11 83260524 501 + 121648857 CCACACTTTTTAAGACT--------------TTAAAAAAAGAGAGAAGTTCGTGGATTCTATTGCCCCAAATCACGTG--------AGCAAGAACTGCGGTGTAC-------TGACAAGA--TGGGGCCGTTACGCTTTTGACAGAAATTTATGGTGAAGTG-AGTTTCCTTTTCTGATGAACT--TACCCTGGAGCCAGGCTTCCTTGGTTTCATTTCCCAATCCGTGGTGTATCAGCTATGTGTTTTTCTGTTGTTTATTCACCCCTCTGTGCTT-AGTGCTTCTGTGAGTAACAGGGACTAACAATGATACCTACTTCAGAGG----------ACCACAGAGAGAATGAAATACATAAGTACTC-----------------------------AGGCTATCACTGGC-------TCATGGTAAGTGCTGTGTTAAGTGCTAACCACAATTA-CTATCATTTACATTTTTGTAAGTCTCCAGTTTTTTTAAAATTAAAAATAATTTAACATTGAAACCCAGATTTTACATGTTTATAAGCACCATGTGATATTTCATTCTGTATAACTGACATTCAAATCA s rn3.chr10 71770126 548 + 110733352 CCACACTTTCTAAGACCAAAGAAAAAAGAGGAAAAAAAAAGAGAGAAGTTCATGGATTCTATTGCTCAAAATCACTTGA-------ACCGAGAACTGCGGTATAC-------TGACAAAA--TGTGGCCGTTAAGCTTTTGGCAGGAGTTTATAATTAAGTG-AGTTTCCTTTTCTGATGAACT--AATCCTAGGGCCAGGCTCCCTTGGTTTCATTTCCCAATCTGTGATGTATCAGCTATGTGTCTTTCTGTTGTTTATTCAGCTCTCTGTGCTT-AGCACTTTCGTGCCTAACAGGGACTAACAATGATTCCTACTTCCGAGGAATGATTCCTACCACAGAGAAGATGAAATGCATTAGTAATCAGGCTATCACTGGCTCGTGCGAAGTGCTGTGTTAAGTGCTAATCTCAGTGCTGTGTTAAGTGCTAA------------CCACAATTA-CTATCATTTACATTTTTCTAAGTCTCCAGTCTTTT--AAATTAGAAATAATTTAACATTGAAACACAGATTTTACATGTTTACAGTCACCATGCAATATTTCAGTGTGTATAACTGATGTTCAAATCA s canFam1.chr9 23359043 431 - 53642819 CTTACTTTTCTAAG-----------------------GAAAAGAGAAATCCATGGACTCCACTGTTCAAAGACATGCAGAATGCAAAACTGAGA-GACATTCTATATCGCAATAACAAC---TCTGGTTTGTAAGCTTCTAACATAAATTTATAATAAGCCC-ATTTCCCTTTTATGATTTACTTATGctttggaaccagacttccttggcgtcatttccaaatctaacatgtgttagctgtgtattcttctgtaggctacttacctctctgtgtttcagtttccttgtgtgtgaaaggggata---atagtacgtacctcagagg----------actcctaggagggtaaaatacattagcatct------------------atgaaaggctgtgaatagcttt----------ttcctgtaagcactatg-----------ttagtgttagttactattATCATTTT---------------------------------------TACTGAA---------------------------------ATATACCAGTCAATCTATTTTATGTATTAAAAA a score=91.0 s hg17.chr17_random 774166 1 + 2618010 A s canFam1.chr9 23359474 1 - 53642819 A a score=-3669.0 s hg17.chr17_random 774166 1 + 2618010 ----------------------------------------A s panTro1.chr19_random 2803478 1 + 57627672 ----------------------------------------A s mm5.chr11 83261172 1 + 121648857 ----------------------------------------A s rn3.chr10 71770674 41 + 110733352 GGGTCTGTCTATCTATCGAGTAATTTCTTGGTGGTGAAAGC a score=102928.0 s hg17.chr17_random 774167 381 + 2618010 GTGCAGG-TCTCTTGTT----CTTTGCCTGGATACCCCTATCCCTG---TCTTTGCCT---------------------------GGCTAAT------------TTCAGT--TTA--------------------------------------------------------------------ACCTATAATAGAGAAAAGTTAGAGCAATGTAAATGGACTGATGT------------GAATGATTAAATAC-------------AACTTTTGGTATATCTATGCAATAAAATATCATGTGTATATTCATGCCATTTTTGAGTAATATTTAAGTTTGTAATGGCAC----AGAAGAAGACTAAGTAGCAATAATAAG--------ATATACTAGGTCATGAAAGAATATTAAGTACCAATAGTAAAATATAAAGCTAGGTACAGAATGATAGGGCAATTTTAATTTTCTT--------------------ATATATGCTTCCCTATATTTTTT--CAGTTTTGCA-AACGACCACGTATACTTTCT---------ATAAAAGAAAA s panTro1.chr19_random 2803479 381 + 57627672 GTGCAGG-TCTCTTGTT----CTTTGCCTGGATACCCCTATCCCTG---TCTTTGCCT---------------------------GGCTAAT------------TTcagt--tta--------------------------------------------------------------------acctataatagagaaaagttagagcaatgtaaatggactgatgt------------gaatgattaaatac-------------aacttttggtatatctatgcaataaaatatcatgtgtatattcatgccatttttgagtaatatttaaGTTTGTAATGACAC----AGAAGAAGACTAAGTAGCAATAATAAG--------ATATACTAGGTCATGAAAGAATATTAAGTACCAATAGTAAAATATAAAGCTAGGTACAGAATGATAGGGCAATTTTAATTTTCTT--------------------ATATATGCTTCCCTATATTTTTT--CAATTTTGTA-AACGACCATGTATACTTTCT---------ATAAAAGAAAA s mm5.chr11 83261173 422 + 121648857 GCACAGG-TCTTTTTAT----TTTTGCCCGAGTAATCAGTACCCAC---TTTCTGCCT---------------------------CGCTCATC--------ACCCTCAGTGCTCA--------------------------------------------------------------------GCTCAATTTAGAGAAAAGTTCAAAACAGTCGAATGGACAGAGCTACCTAAGTAGTAGAATCCTTAAATAC-------------AAGTGTTAGTACTTCCAGACAATGGAATGGCATAGATTCCTCAATGTGTGTCTCAGTTAATGACTAAGTCTTTAACACCCC----TGACAGATATTAACTAGCAACGTGAAG--------GCAGGCTGAGTTGAGAAAGAATGTTAAGTATTAACAAC------TAAAATCCAGTACATAATGATAGAGAATTCTAAGTCATCCTAAATCTTAAGGATT-TGAAGATACGTGTCTTTCAGTAGTTTCTAGAAATTTTAC--AGCAACTGCACATTTTTTTTTTTTTTTTGGTAGACGGGAA s rn3.chr10 71770715 511 + 110733352 ATGCAGGATCTTTTCTTCTAGCTCTGTTGAAATACACAGCCCATTA---TCGTTGTCTTTAGTTGCCCTACTGTGAAACAGGACACAATAAA------------TGCATC--TTACTTATAAAAGCACAGGTCTTTTGACTTTTGTCCACTCTCTGCCTAGATCATCACCTTCAGGTCTTAGTGCTCAATTTAGAGAAAAGTTCAAAACAGTCAAATGGATGGAGCTACCTAAGTAGTAGAATCCTTAAATAC-------------AAGTCTTAGTACTTCTAGGCAGTGGAATATTATAGATTCCTGAATGTGTGTCTCAGTGAATGACTAAGTCCTTAACACCCCTTATAGATAGATATTAACTAGCAATGCAAAT--------GCAGGCTGATTCGAGAAAAAATGTCAAGTACTAACAGC------TTAAACTTGTCACATAATGACAGAGACTTCTAAGTTGTCCTAAATCTTAAGG-ATCTGAAGATTCATGCCTTCCTATAGTTTCTAAAATTTTTAC--AGCAACTTCAGATATTTTTG---------ATAGAAGGAAA s canFam1.chr9 23359674 417 - 53642819 GCACAGG-TCTCTTGTT----CTTTGCCTAGTTAACCCTGGCCCTATACTCTTTGCCT---------------------------GGCTAATCTTTCTTCAGATCTCAGC--TAA--------------------------------------------------------------------ATTTATAATAGAGAAAAGTTAGAACAACCTGAATGGGCTGACCT----AAGTAACAGAATGGttaattatacatttaaaaataaaattttGGTATATTCACGGAATGAAATATCACA--------CATGCCAATTTTGAATAACTTTAGTGTTTTTAATGACAT----AGAAGAATATAAAGTAACAAAAATAAGATATACTAATATACTAGTTCAAGAAAGAGTAGTAAGTGACAATAGTAAAATATAAAAACATGTACAGAATG-TTGAGTCATTTTTATTTTCTT--------------------ATTTATGCTTTCCTATATTTTCT--AATTTTTGTACAGTGACTATGTATATTTTCT---------ATGaaaaaaaa a score=5769.0 s hg17.chr17_random 774548 13 + 2618010 ACAAACTGATATA s panTro1.chr19_random 2803860 13 + 57627672 ACAAACTGatata s mm5.chr11 83261595 13 + 121648857 ACAAACCAATGTA s rn3.chr10 71771226 13 + 110733352 ACAAACCAATGTA a score=3044.0 s hg17.chr17_random 774561 56 + 2618010 TATGTTAGTtataaatatatagatataatacatat--------------------attagttatatatatatatat s panTro1.chr19_random 2803873 52 + 57627672 tatgttagttataaagatatagatataatacatat--------------------attagttatatatatat---- s rn3.chr10 71771239 70 + 110733352 -ATTTTCTTT-TAAAAGTTCAGACCTCAGATTTTTCTCTTATTTACTCTTCGACAATTGGACACATGTATAC---- a score=29473.0 s hg17.chr17_random 774617 320 + 2618010 tatttatttatttatttatttatttatttattttgagacagagtctcgctctgtcacccaggctggagtgcagtggagctatctcggctcactgccatctccaccttccagtttcgagagattctcatgcctcagcctcccgagtagctgggactgtaggcatgtgccaccacaccaaactaagtttttgtatttttaatagacgtggggtttcactatgttggccaggctattctcaaactcctgactcagatgatccacccatctcagcctccgaaagtgctgggattataggcatgagccagcacccctggccATAA s panTro1.chr19_random 2803925 314 + 57627672 ------tttatttatttatttatttatttattttgagacagagtctcgctctgtcacccaggctggagtgcagtggagctatctcggctcactgccatctccaccttccagtttcgagagattctcatgcctcagcctcccgagtagctgggactataggcatgtgccaccacaccaaactaagtttttgtatttttaatagacatggggtttcactatgttggccaggctattctcaaactcctgactcagatgatccacccatctcagcctccgaaagtgctgggattataggcatgagccagcacccctggccATAA a score=2213.0 s hg17.chr17_random 774937 9 + 2618010 ATTTTTTTT s panTro1.chr19_random 2804239 9 + 57627672 ATTTTTTTT s mm5.chr11 83261608 9 + 121648857 ATTTTCTTT a score=4314.0 s hg17.chr17_random 774946 35 + 2618010 CAAAAA---AAAAACAAAAACAGATCTCAAATTTTTTG s panTro1.chr19_random 2804248 38 + 57627672 CAAAAAGAAAAAAAAAAAAACAGATCTCAAAATTTTTG s mm5.chr11 83261617 26 + 121648857 TAAAAG------------TTCAGAGTTCAGATTTTTCT s canFam1.chr9 23360091 35 - 53642819 caaaac---aaaacaaaacTCAGGCATTATCTTTTTTG a score=0.0 s hg17.chr17_random 774981 13 + 2618010 GAAGCCCTCCATA a score=1246.0 s hg17.chr17_random 774981 13 + 2618010 GAAGCCCTCCATA s panTro1.chr19_random 2804286 13 + 57627672 GAAGCCCTCCATA a score=10120.0 s hg17.chr17_random 774994 69 + 2618010 ACACTTCACTACCACCATCTAAAGtgcttaccctcgccctcggacacaatgcctgtcacacagtaggta s panTro1.chr19_random 2804299 69 + 57627672 ACACTTCACTATCACCATCTAAAGtgcttaccctcgccctcggacacaatgcctgtcacacagtaggta s canFam1.chr9 23360126 68 - 53642819 ACATTTCACCACCACCTTCCAAAACAtgtatcccaatgcttgaa-atagtgcccagaatatagtagacc a score=13096.0 s hg17.chr17_random 775063 66 + 2618010 ctcaatacagctttactgaatTATGTTCATCTCTTGCTGGAGTATTCCCTATCGCCTGCATGGAAA s panTro1.chr19_random 2804368 66 + 57627672 ctcaatacagctttactgaatTATGTTCATCTCTTGCTGGAGTATTCCCTATCGCCTGCATGGAAA s mm5.chr11 83261692 66 + 121648857 CTTAATTCCTCCTAACCCTGTCATATCTCTTCCCTCCCCTTCTCTCTCCTCTCATTTGACTGGGAA s canFam1.chr9 23360194 65 - 53642819 ctcagtaaagttttattgaatTATTTTTCTCTCTTGTTGGA-TATTCTCTGTGACCAAACTGGAAA a score=2323.0 s hg17.chr17_random 775129 14 + 2618010 AAGGCCAGAAACA--------------A s panTro1.chr19_random 2804434 14 + 57627672 AAGGCCAGAAACA--------------A s mm5.chr11 83261758 28 + 121648857 GGGGATAGAAACACATGTACAAGCATCA s canFam1.chr9 23360431 14 - 53642819 aaggaaagaaaga--------------a a score=-155.0 s hg17.chr17_random 775143 1 + 2618010 T s panTro1.chr19_random 2804448 1 + 57627672 T s mm5.chr11 83261786 1 + 121648857 A a score=91.0 s hg17.chr17_random 775143 1 + 2618010 T s canFam1.chr9 23360562 1 - 53642819 T a score=82035.0 s hg17.chr17_random 775144 225 + 2618010 TTGAAGGAAGAT----GCTTCACAAGGAATACTGAAAGTTTTCTTGACCTCATGAATGCTGGTGAGGCTTTACCCCTCTCTCAGGAATTTAACATCTCCTGAAGTTCCTGACCTCTGCCTTTCACAACTAA-GAGCAGGCTGTGGC-GGTGACCAAGGTCCATTTCCATGGTAAGAAGAGTGGGGCTGGCCAGCTCTGTAGTCAGAGTGTGGCAGTCACCGATGAGCTGCT s panTro1.chr19_random 2804449 225 + 57627672 TTGAAGGAAGAT----GCTTCACAAGGAATACTGAAAGTTTTCTTGACCTCATGAATGCTGGTGAGGCTTTACCCCTCTCTCAGGAATTTAACATCTCCTGAAGTTCCTGACCTCTACCTTTCACAACTAA-GAGCAGGCTGTGGC-GGTGACCAAGGTCCATTTCCATGGTAAGAAGAGTGGGGCTGGCCAGCTCTGTAGTCAGAGTGTGGCAGTCACTGATGAGCTGCT s mm5.chr11 83261787 182 + 121648857 CCAAAGAAAGGG----GCTTCGTAAGAAATGCAGGAAGTTTCC----------AGATACTGGTGAGATTGGATGTTTCACTCAGGAATTTAACATGCTCTGAAGTCACTGCCCTCTACCTGGGACAGCCAAGGAATAGGCTGTGGCTGGTGACTACGGTCTG-----------------------------------GTGGCCAGAGTCTAGCAGTTGCTAATGAGCTGCT s rn3.chr10 71771494 180 + 110733352 CCAAAGAAAGAG----GCTTTGTAAGAAATGCTGGAAGTTTCC----------AGATACTGGCGAGTCTGGGTGCTTCGCTCAGGACTTTAACATGCTCTGAAGTCACTGCCCTCTACCCGGGAGAGCCGAGGAACAGGCTGTGACTGGTGACTACAGTCTG-----------------------------------CTGGCCAGAGTCTGGCAGTCGCT--TTAGCTGGC s canFam1.chr9 23360563 219 - 53642819 TTGAAGGAAGAGTGATGCTTCCTAAAGAATACTGGAAGTTTTC---------CAAACACTGATGAGCCTTTAACCTTCTCTCAGGAATTTAACA-ACTGTAAATTCACTGACCTCCATCCTTGACAGCAAA-GAGCAGGCAGTGGTGGGTGAAGAAGACTCATTTCCTCTTTAAGAAGAATGAGGCT-GCTGGCTTGAGGGGTGGAGTGTGATTGTCTCTGATGAACTGCT a score=1874.0 s hg17.chr17_random 775369 7 + 2618010 CCAACCG s panTro1.chr19_random 2804674 7 + 57627672 CCAACCG s mm5.chr11 83261969 7 + 121648857 TCAGCTG s canFam1.chr9 23360782 7 - 53642819 TCAATTA a score=-474.0 s hg17.chr17_random 775369 13 + 2618010 CCAACCGCTCACT- s canFam1.chr9 23360782 14 - 53642819 TCAATTAGCAACAT a score=-543.0 s hg17.chr17_random 775376 6 + 2618010 CTCACT-- s panTro1.chr19_random 2804681 6 + 57627672 CTCACT-- s canFam1.chr9 23360789 7 - 53642819 -GCAACAT a score=3969.0 s hg17.chr17_random 775382 8 + 2618010 GTCCTATG s panTro1.chr19_random 2804687 8 + 57627672 GTCCTATG s rn3.chr10 71771674 8 + 110733352 GTCCTCTG s canFam1.chr9 23360796 8 - 53642819 GTCCTATG a score=100.0 s hg17.chr17_random 775390 1 + 2618010 g s canFam1.chr9 23360804 1 - 53642819 G a score=43758.0 s hg17.chr17_random 775390 488 + 2618010 gaggcagaaatttaaaaaataaatatgcactcattcattccaagaaaataacaggcaataaaggagaag---ttttcctctgcc-tagcaagctcgcttcaaggacagttataagataacgttgtttgagaagtcgaagccaaaggaatgggctccagacaccccacctccataacaagtctgaagaaaaaaaaaagggacaaatgtctgtatttagccagttctgtttttctttcagtgcagctgtaaggccaccagctaagcaaggccacaagttatgctatgctatagactatgggacctatcattatatgattaactgctttagttttgcttctgcaagcctgcttgtaaaaccccactctgtctttgttgaaatgctccaaatgctcagctttttggatatgaattcactgagccagtgcacaccttaaaataaatatcctcctgttctcccatattggtctcttcattcctcagtttactacagca s panTro1.chr19_random 2804695 491 + 57627672 gaggcagaaatttaaaaaataaatatgcactcattcattccaagaaaataacaggcaacaaaggagaagaagttttcctctgccctagcaagctcgcttcaaggacagttataagataacgttgtttgagaagtcgaagccaaaggaatgggctccagataccccgcctccataacaagcctgaagaaaaaaaaa-gggacaaatgtctgtatttagccagttctgtttttctttcagtgcagctgcaaggccaccagctaagcaaggccactagttatgctatgctatagactatgggacctatcattatatgattaactgctttagttttgcttctgtaagcctgcttgtaaaaccccactctgtctttgttgaaatgctccaaatgctcagctttttggatatgaattcactgagccagtgcacaccttaaaataaatatcctcctgttctcccatattggtctcttcattcctcagtttactacagca a score=2905.0 s hg17.chr17_random 775878 6 + 2618010 TTACAG s panTro1.chr19_random 2805186 6 + 57627672 TTACAG s mm5.chr11 83261986 6 + 121648857 CTACAG s rn3.chr10 71771682 6 + 110733352 CTACAG a score=146376.0 s hg17.chr17_random 775884 367 + 2618010 ATTTCATCCTGAAGAATGCTGCACTCTGGATAATTGTGTACTTGTTTCTTCAATCCACAATTCAGCTTCTGCTCCCATTTCCCCCAAAGTGACTTGGATACCATACTGGCAAAACCACAGGATTTGCCTCGTCTTGGTTTCTTATCTTGGCAAAATGACCCTATGTTCCAGCTCCCCTTGGGTTTCCAGTCTCCACATTTGCCCTCCAGGAGTTCTCTAGTTCTAGGCA-TCCACCTCCTGGAGGCCA--CCTCTTGGCCCCAACACTCAGAGG-TCTC--------CCCAACACTCTA----------------------GGAGAGGCCAGGATGTCCAGA-TTGACTGCCTCTCTACCCTGCTCCTCAGCACTTTGGTAATCTCTTCTGAGAGTCTGTTA s panTro1.chr19_random 2805192 367 + 57627672 ATTTCATCCTGAAGAATGCTGCACTCTGGATAATTGTGTACTTGTTTCTTCAATCCACAATTCAGCTTCTGCTCCCATTTCCCCCAAAGTGACTTGGATACCATACTGGCAAAACCACAGGATTTGCCTCGTCTTGGTTTCTTATCTTGGCAAAATGACCCTATGTTCCAGCTGCCCTTGGTTTTCCAGTCTCCACATTTGCCCTCCAGGAGTTCTCTAGTTCTAGGCA-TCCACCTCCTGGAGGCCA--CCTCTTGGCCCCAACACTCAGAGG-TCTC--------CCCAGCACTCTA----------------------GGAGAGGCCAGGATGTCCAGA-CTGACTGCCTCTCTACCCTGCTCCTCAGCACTTTGGTAATCTCTTCTGAGAGTCTGTTA s mm5.chr11 83261992 352 + 121648857 ATGCCATTCAGAA----CCTTCGCTCTGCATAACCATCTACTTGTCTCTTCCATCCACTATTCAGTGTTTGCTCCCATTTCTCCCAAAGTGACTGAGATACTGCACTGGCAA------------TACCGCTTCTTGGCTTATTGTCTTAGCAAAATGGCTCTGTGTCCCAGCTA-CCTTGGCTTCCCCATCTCAGCTTTTGCCCTCTACTAGCACTCTAGTTTCAAGCA-TGCAC----------TCA--CTCTTGGCCCCCAATGCTCAGTGATTCCC--------CTTAACATCTTAAC----CCTCATACTGTCCCAGGGAGATGCCAGGCTGTCCACA-CGGAC-ACCTCT---GCTTCCTCCGTGGATCTT---TAATGTCTCCCAAGAGTCTACTA s rn3.chr10 71771688 344 + 110733352 ACACCATTTTGAA----CCTTCACTCTGCATAACCATCTACTTGTCTCTTCCATCCACAATTCAGTGTCTGCTCCCATTTTCCCCAAAGCGACTGAGATACTGCCCCGGCAA------------TACTGCTTCTTGGTTCATTGTCGTAGCAAGATGGCTCTGTGTCTCAGCTA-CCTTGGCTTCCCCATCTCAGCTTTTGCCCTCTACTAACACCCTAGTTCTAAGCA-TGTGC----------TCA--CTCTTGGCCCCCAACACTCAGTGA-TCGCCTAACAGTCCTAACTCTCAC------------ACTGTTCCAGGGAGAGGCCAGGCTGTCCACA-AGGAC-ACCTCT----------CCACAGATCTT---TAATCTCTCCCAAGGATCTACTA s canFam1.chr9 23360805 383 - 53642819 ACTCCATCCTGAA---CCCCGTGCTTTGGACAATTTTGTACTTGTTTCTTCAATCTACAATCCAGTTTCTGCTCTCATTTCCCCC-AAGTGACTTGGTTATAACATTGGCAAGACCAAATAATTTATC-CTAATTGGTTTATTATGCTGGCAAAGTGACCAT-----CCAGCTCATTTTGGCTTTCCAGTCTCAACACTTGCTCACAAGAAATTCTCTAGTTTTGGGCATTACACATGCTAGTGGCTAGCACTCTTGGCCCTGACACTCAATGG-TCTC--------CCCAATGCTCATGCACCTCTGCACTTTCCTTCTAGGAGGGCACAAAATGTCAGGATTTGACCACTTCTGTTTCCTGCTCCTCAGAAGTTTTGTAATCTCTTTGGAGAGTTTGGTA a score=215534.0 s hg17.chr17_random 776251 1225 + 2618010 TTAACAGAGATTGCCTATATGTGTAATCTCAGAAGGTCATACCTGTAGAGGGACTCTGGTCATCTCTGAACTGGGAATTGTAGGCCTTGGGTCTTGACATGCATCctgtgtgaccttgat---caggtcttttcacttctctaggttttgctttcctaatctgtaCCGTGGCAAAACAGATCAGGGTCAGGTAAAACCACAGGCCACGGATATGCTGAGGAAAATGAAAAATACCAGGGCATTTTCAAGGTCATGTTACTGCTGTGGCTGCTGGGCCTGTCTGCAGCCTGGGAGGTTGAGGACAAC-------ATGACAAGACAAATGTAAAAATGCCCAGAATGGAGTTATGAATATAGTGGTGGTCAAGGATGTGGGGGGGGGAACCTCTAAATGACCACAAGTGAGGGGGAAAGAAGGGCTTCCCTGCTCGGGGGTGAGAGGGTGGCC-----CTCTGAATGGAGCTCCCTGGAACCATGGATGACCCTTGCTGTCACTTCTTGCAACCCTGAGCTACAAAGAGTTGAGTCCAAGAATAGTATCCATTATGATAAAACTACTGGATGCGTGGGTTGAGGGTGGGGGAGAAGGGGAAGTACCACACTATCAGGGCTGAGGAATCACCTTTTGGGTGGCA--TGTCAGAACACCCAGTTCATTCATACTTGGTTTACTCATTTGGCTATATAGGGGTCCACATCTTGAGTCCATATTACTCATCACATCCCCTC--------------------------------------------------------CATGGAGATAAGCATAacatagtttctgcatcaaggagctcactttctagtcggggaggaaaccacatgaatagataaatatgtgataggtggtaagaaggaagtagttcaggagactg----taggagcacagtgaaggatacagagtttacttgggaaagagatcagggaagtttctctagagaagatgaacatctTTTTTGTCATGTATTTGAGAATCATTTGTTTATTGGCTCTTCTTGGCTTTCCGGTCTCCACGTTTGCCCTCCAGGAGTTCTAAATGGCACCAGTGTCTAAATCTTGTTGGGGGTGGGGGGTAAGTTAATATTGCTGAACAAAATGATACAAGTCCTTTTTACTCTCAGTGTGGACTTCCACTGGTGCAGACATAGTATTGTTGTTAGGATCTTCATGAAGATCCATCAAAACGTTTTACCCCCATGAGCCAAAGATCAGATCAAGGCGAGGAAACAAAAGTCAACAGACAAACTCATTGTATGGCTCAGTGAT s panTro1.chr19_random 2805559 1224 + 57627672 TTAACAGAGATTGCCTATATGTGTAATCTCAGAAGGTCATACCTGTAGAGGGACTCTGGTCATCTCTGAACTGGGAATTGTAGGCCTTGGGTCTTGACATGCATCctgtgtgaccttgat---caggtcttttcacttctctaggttttgctttcctattctgtaCCGTGGCAAAACAGATCAGGGTCAGGTAAAACCACAGGCCACGGATATGCTGAGGAAAATGAAAAATACCAGGACATTTTCAAGGTCATGTTACTGCTGTGGCTGCTGGGCCTGTCTGCAGCCTGGGAAGTTGAGGACAAC-------ATGACAAGACAAATGTAAAAATGCCCAGAATGGAGTTATGAAGATAGTGGTGGTCAAGGATGTGGAGGGGG-AACCTCTAAATGACCACAAGTGAGGGGGAAAGAAGGGCTTCCCTGCTCAGGGGTGAGGGGGTGGCC-----CTCTGAATGGAGCTCCCTGGAACCAAGGATGACCCTTGCTGTCACTTCTTGCAACCCTGAGCTAAAAACAGTTGAGTCCAAGAATAGTATCCATTGTGATAAAACTACTGGATGCGTGGGTTGAGGGTGGGGGAGAAGGGGAAGTACCACACTATCAGGGCTGAGGAATCACCTTTTAGGTGGAA--TGTCAGAACACCCAGTTCATTCGTACTTGGTTTACTCATTTGGCTATATAGGGGTCCACATCTTGAGTCCATGTTACTCATCACATCCCCTC--------------------------------------------------------CATGGAGATAAGCATAacatagtttctgcatcaaggagctcactttctagtcggggaggaaaccacatgaatagataaatatgtgataggtggtaagaaggaagtagttcaggagactg----taggagcacagtgaaggatacagagtttacttgggaaagagatcagggaagtttctctagagaagatgaacatctTTTTTGTCATGTATTTGAGAATCATTTGTTTATTGGCTCTTCTTGGCTTTCCAGTCTCCACATTTGCCCTCCAGGAGTTCTAAATGGCACCAGTGTCTAAATCTTGTTGGGGGTGGGGGGTAAGTTAATATTGCTGAACAAAATGATACAAGTCCTTTTTACTCTCAGTGTGGACTTCCACTGGTGCAGACATAGTATTGTTGTTAGGATCTTCATGAAGATCCATCAAAACGTTTTACCCCCATGAGCCAAAGATCAGATCAAGGCGAGGAAACAAAAGTCAACAGACAAACTCATTGTATGGCTCAGTGAT s canFam1.chr9 23361188 1233 - 53642819 TCTTCTGAGACTTCCTGTATTTGCAATATCAG-AGGTCATACCTGTAGAGGAAGTCTGGTTATCTCTGAACCAGGACTTGGAAGACTTGAGTCTTGACATACATCctgtgtgaccttgattaataagtctttgaacttctct-gaatttgtattcctaatctgtacaatgCCAAAACATATAGAGATCAAATAAAACCAT-GGAGGTGGATATGCTGGGGGAAATCAGAAGTACTAGGACCTTTGAATGTTCATATTACTGCTGTGGCTAGTGGTCCTGTTTGCAGCCTGGGGAGTCTGGGAGAACAAAAATGAGGAGAAAACAGATGTGAAAGTGACCAAAATGGAATAATGAGCACAGTGCCAGTCAAGGGTATAGAAGGGGAAACCTTAATGTTACCACGAGTAAGGGGAAGTGAAGGGCTTTCCTGCTCAAGAGTGAGGAGATGACCACAGAATGTGTATGGAGCT-CCTGGGACCATGGTTGACTCTTGCTACCACTTCTCACAACCTTAAGCTGGAAAGAATTGAGTCT-AGAATAGTATCCTTGATGATAAAACTACTGGGTCTATGGGTTGAGGGC--AGAAGAAGGAAGAAAATTATCCCATTAAAGCTGGGGAGTCACACTTTGGATAGAATTTTTCAAAATAATCAGTTTATTCTTACT--------TCATTTAACTAAAT-GGAATTCATATCCTGAGTCCATGTTATCTGTCACAACCCCTCCCATTAAAACCTCTGGGCATATATTAAGCAAATGTTTATTGAACACCTACTGTTTTCACAGAGATAAGCATGACATGGTTTCTGTATCAAGGTGCTC-CTTTTTAGTGAGGGAG--------ACAAACAAATAGATATGTTATAGGTGATAAGATGGAGGGAGCTCTGGAGGCTTCCTCTAGGAGCATGGAGAGAGATTCAGAGTTTAGTTGGAAGAGGGGTCAGGGAGGGTTATCTAAAGACAATGAGCACTTTTTTTGTAGTGTATTTGGGAGGGATTTGTTC-TTATTCTCTATTGACTATC------------------------ACTTAGAAATAGCTTCAATGTATGAATCTC----------AGAGGCCA-TTGATTCAGCTTAACATGTTGACAGAAG-CCTTGGTACTTTTGGTGTGGAATTTCACTGGTGTGAACACAGCATTATTGGTGAGACCTTCACAAA-------CAAAACATTTTATCTCTATGAACCAAAGATCAAACCAAGGCTAAGAAGCCAAAGTCAACAGTCAAACTCATTGTGTGGCTCAATGCA a score=18921.0 s hg17.chr17_random 777476 108 + 2618010 GGCTAATCACCCATTT-TATCAATCATTATTCTCCTGAAGCCCCAGAACAGGCTTCCTCCTAACCCCTCCAC-------------------CCTGCTCATTCAGACAGC---------------TACTC-----TAGT------GGGAATTGAG s panTro1.chr19_random 2806783 108 + 57627672 GGCTAATCACCCATTT-TATCAATCATTATTCTCCTGAAGCCCCAGAACAGGCTTCCTCCTAACCCCTCCAC-------------------CCTGCTCATTCAGACAGC---------------TGCTC-----TAGT------GGGGATTGAG s mm5.chr11 83262621 129 + 121648857 GATCAATCATCCATTTCCATCTACCAT-----CCCCAGTGCCCCAGAGCAGG-TGGCTCCATAGCCCTCCACCAAAAGGTGATAAAGACA-CAGGCTAATGTAGGCAGA---------------GGCTCCTCCTTAGCCCA---GTGAACTTTG s canFam1.chr9 23362421 154 - 53642819 GATTAATTATCCATTTTTATATATCATCATTCTCCTATTGTTCCAGAGCAGACACCTTCATAATCCCTCCACAGGTTGAAGATCAGCACACCCCACTCATTTAGACAGAGGACTCCATGTCAAGTGCTCCTTCTTAGTGCATGGTGGGGTTTAG a score=203583.0 s hg17.chr17_random 777584 593 + 2618010 ACTTAACTTGAAACTACTCATCTACAGCTGATAGACAGCCTTCTCCATCCTTCAGGCTTCCTGACACTTTGTTTCTT-CCTCTGACATGACACTTAGcttattccacctcttgggatagttatttctgtcactgtcaatgccatcactagacatggaactcttcaaaggcagggatggggcttcattcagctctgtctgccctggcaaagagcagatggttagtacatTGGGCTGAACAAAAATGTCATAGATAACGAAGTCTGCGTGAATCCAGAGAACATGAAACACATACTGCTTCCCTTAAAGTGAGGTCCTCGATGCATGAAGATGAAACTGCACCAACTAGGAAAGGTCAGGAGAGGTACTAACACATCTGCTATCAGGCAACACGGAACATTACAGCTGGG-GGCGAGGGTCTTGGAGAAGATCAGAACATTTGAAGCAAGAGCTGTACAAAGAAAAGGGGGAG---AGAACAGATGAGAGAAGTGCAGCTTGTGTGTGCGGGTGGGGAGGG---AGGGAGAGTGCTGAGGCAGGATGACCTTGTACTTTATTTCATGACCCTGAAGTACCCCAGGATGCTGCTCCAACCTCTC s panTro1.chr19_random 2806891 593 + 57627672 ACTTAACTTGAAACTACTCATCTACAGCTGATAGACAGCCTTCTCCATCCTTCAGGCTTCCTGACACTTTGTTTCTT-CCTTTGACATGACACTTAGCTTATTCCACCTCTTGGGATAGTTATTTCTGTCACTGTCAATGCCATCACTAGACATGGAACTCTTCAAAGGCAGGGATGGGGCTTCATTCAGCTCTGTCTGCCCTGACAAAGAGCAGATGGTTAGTACATTGGGTTGAACAAAAATGTCATAGATAACGAAGTCTGCGTGAATCCAGAGAACATGAAACACATACTGCTTCCCTTAAAGTGAGGTCCTTGATGCATGAAGATGAAACTGCACCAACTAGGAAAGGCCAGGAGAGGTACTAACACATCTGCTATCAGGCAACACGGAACATTACAGCTGGG-GGCGAGGGTCTTGGAGAAGATCAGAACATTTGAAGCAAGAGCTGTACAAAGAAAAGGGGGAG---AGAACAGATGAGAGAAGTGCAGCTTGTGTGTGAGGGTGGGGAGTG---AGGGAGAGTGCTGAGGTAGGATGACCTTGTACTTTATTTCATGACCCTGAAGTACCCCAGGATGCTGCTCCAGCCTCTC s mm5.chr11 83262750 511 + 121648857 ACCTTACTTGGAACTTTCTACCTACACATGAAGGATAACCTT---CATTC-TCAGACTCCCTGACACCTTGTGTGTCACCTCTCATGTGTCAC----CTTATTTCACCTCACGGGACG-----TTCTATCACTGTCCATGCCATCAATAGGCTAAGGTCTCCTTGAGGG-ACCAATGAGGTTTTATTCCACTGCCTGTGCTCTGACAAACAGAGGATGAGCAGGAAGTTAGGCTGAACTGAACTGCCATGGGAAATGAAGTCCATGAGGACCTAAGAGCCCAAAGACACACA--------------------TTCTTGATGTGTGAGTGTGACTCTCCATCAACCCAGAAAGCTCATCAGAAAGACTAGCTTGTGTGC-AGCAGGGAACACAGAACACAAGACCTGGGCGATGAGGCT-------GAGGACAGAAAGTGT------------------AGCAGAGGGGTGG-------------------GTGCAGTCTGTGCAC-----TGGGAAAAG---AG---GACCAATGAGGGAGGATAAACTTGTGCTCTGTGAAATGACTGTGAAGCAACCCAGGGCACTGCTCTGTCTTTTC s rn3.chr10 71772441 507 + 110733352 ACCTTATTTGAAGCTTTCTACCTACTCATGAGGGAGAATCTT---CATCC-TCAGACTCCCTGATGCCTTGTTGCTA-TCTCTTATGTGTCAC----CTTATTCCACCTCATGGGACAGTCATTTCTATCACCATCCAAGCCACCAATAGGCTAAGATCTCCTTGAGGG-AATGCTGAGGCTTTATTCCACTGTCTCTGCTCT-----------GATGAACAGGAAGTTGGGCTGAACTGAAATGCCATGGGAAATGAAGACCAGGAGGACCCA-AGAGCACAAGATAAA----------------------TTCTTGATGTATGAGCATGGTGCTGCACCAATCCAGGAGGCTCATCAGAAAGACTAGCTTGTGTGC-AGCAGGGAACACAGAGCACAAGGCCTGGGCGATGAGGCT-------GAGGACAGA-----------------------------AGGCACAG---CAGAGGGATGG-----GTGAAGTCTGTATGT-----TGGGAGAAGTCCAAGAGGACCAGTGAGGTAGGACAAACTTGTGCTCTGTTAAGTGACTGTGAAGAACCCCAGGGTGCTGCTCTGTCCCTCC s canFam1.chr9 23362575 578 - 53642819 ATTTGACTGGGAACCATTCATTGACAGTCAAGGAATGGCCTT----------------CTCTGACATTTTGTTTCTA-CCTCTGATGTGATACTTACTTTATTCCATCTCATGGCATTGTTATTTCTGTCACTGTCAATACCATCACTAGCCTAAGAACTCTTTGAGGGTATATTTGGGGTTTCACTCAGTTTTGTCTGCCCTGACAAACAGCAGATGACTACTCAACTGAGTTGGATGGAAATGCCAT-GAAAACAAAGTCTAT-AGATTGAGGGGAACATAAGACACATCCTTCCTCCCTTAAAGCAAGGTGCTTAATGCATGAACATGAAACTCCATCAACCAGGAGAGGCCATGAGAGATACTAGCATAGGTGA-TACAGGGATCACAGAAACTTAGAGCTGGG-GATGGAGGTCTTGGTAAATATTGGAACATTTGGAGCAAGACTTACACAAAGAAAAGGGTAAGGACAGGAGAGAGGAGAGAAGTACAGTTTGTGTGTGTAGGTGGAATATGGGTGGGGGGAGTGATAAGGTAGGATGACATTGAACTTTATTTGTAG--CCTGAAGCACTCCAAAATGCTCCTCTCATCTCTC a score=100.0 s hg17.chr17_random 778177 1 + 2618010 C s canFam1.chr9 23363153 1 - 53642819 C a score=300.0 s hg17.chr17_random 778177 1 + 2618010 C s panTro1.chr19_random 2807484 1 + 57627672 C s mm5.chr11 83263261 1 + 121648857 C a score=-576.0 s hg17.chr17_random 778178 3 + 2618010 TGT-- s panTro1.chr19_random 2807485 3 + 57627672 TGT-- s canFam1.chr9 23363154 3 - 53642819 --TAG a score=135303.0 s hg17.chr17_random 778181 1492 + 2618010 GGCTCCCAGATGCTGTGGGTCCCtttttttcttaacttgtattttaggttcaggggtacatgtgcaggtttgttatataggtaagttgtgtgttgcggggggtttggtgtacagattatttcatcacccaggtaataagcatagtacccaataggtagttttttttatcctcaccctcctcccacccttcacccttaagtaggccctggtgcctgctgttcccttctttgtgtccatgtgtactcaatgtttagcttcc-acttataagtgagaacatgcagtatttggttttctgttcctgtgttagttcgcttaagataatggcctccagctccatccat-gttgctgcaaagggcatgatcttgttcttttttttatgactgagaagtattccattatatatatatatatatatatatatatatac----------caaattttttttatccagtctaccatcagtgggcatttaggttgattccatgtctttgctattgtgaatactgttgcgatgaacatacatgtgcacatgtctttatggtagaatgatttatattcctttgggtatatacccaataatgggattgctgggttgaatggtaattctgttttaagttctttgagaaatcgccaaactgcttcccacaatggctgaactaatttacattcccaccagcagtgtataagtgttccttttctccacagcctcaccaacatctgttattttttgactttttaaaaatagccatcctgactggtttgagatggtatctcattgtggttttaatttgcatttctctaatgattagtggtgctgagcattttttgtatgtttcttggccgcgtgtacgtcttcttttgaaatgtgtctgtttatgttcaatgcccacgttttaacggagttgtttgttttttgcttgtacatgtgtttaaattccctatagattctggatattagacctttgtgagatacatagtttgtaaatattttctcccattctgtaggttatctctttactctgctgataatttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcagtttttggttttgttgtgatttgtttttggcatcttcatcatgaaatatctgccagatcctatgcccagaatcatattgtctaggttatcttacaggtatcatatttttatagttttatattttaggttttacatttaagtcttcaacccattgtgagttgatttttacagatggtgtaaggaaggggtccagtttcaatcttttgcatacagctagccagttatcccagtaccatttattgactgggaagtcctttccct-gttgcttgtttttgttaactttgtcaaagttcggatggctgcaggtatgcagcattatttctgagctctctattttgttctattggtctatgagtctgtttttgtaccaaagccatgctgttttggttactgcagccctgtggtatagtttgaagtca s panTro1.chr19_random 2807488 1504 + 57627672 GGCTCCCAGATGCTGTGGGTCCCtttttttcttaacttgtattttaggttcagggctacatgtgcaggtttgttatataggtaagttgtgtgttgcggggg-tttggtgtacagattatttcatcacccaggtaataagcatagtacccaataggtagttttttttatcctcaccctcctcccacccttcacccttaagtaggccctggtgcctgctgttcccttctttgtgtccatgtgtactcaatgtttagcttccgacttataagtgagaacatgcagtatttggttttctgttcctgtgttagtttgcttaagataatggcctccagctccatccattgttgctgcaaagggcatgattttgttcttttttttatgactgagaagtattccattatatatatatatatatatatatatatatatatatatatatcaaaatttttttatccagtctaccatcagtgggcatttaggttgattccatgtctttgctattgtgaatactgttgtaatgaacatacatgtgcacatgtctttatggtagaatgatttatattcctttgggtatatacccaataatgggattgctgggttgaatggtaattctgttttaagttctttgagaaatcgccaaactgcttcccacaatggctgaactaatttacattcccaccagcagtgtataagtgttccttttctccacagcctcaccaacatctgttattttttgactttttaaaaatagccatcctgactggtttgagatggtatctcattgtggttttaatttgcatttctctaatgattagtggtgttgagcattttttgtatgtttcttggccacgtgtttgtcttcttttgaaatgtgtctgtttatgttcaatgcccacgttttaacggagttgtttgttttttgcttgtacatgtgtttaaattccctatagattctggatattagacctttgtgagatacatagtttgtaaatattttctcccattctgtaggttatctctttactctgctgataatttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcagtttttggttttgttgtgatttgtttttggcatcttcatcatgaaatatctgccagatcctatgcccagaattgtattgtctaggttatcttacaggtatcatatttttatagttttatattttaggttttacctttaagtcttcaacccattgtgagttgatttttacagatggtgtaaggaaggggtccagtttcaatcttttgcatacggctagcccgttatcccagtaccatttattgactgggaagtcctttcccttgttgcttgtttttgttaactttgtcaaagatcagatggttgcaggtatgcagcattatttctgagctctctattttgttctattggtctatgagtctgtttttgtaccaaagccatgctgttttggttactgcagccctgtggtatagtttgaagtca a score=6174.0 s hg17.chr17_random 779673 17 + 2618010 TGGCTCCCT--TTTTTTAC s panTro1.chr19_random 2808992 17 + 57627672 TGGCTCCCT--TTTTTTAC s mm5.chr11 83263292 19 + 121648857 TGGCTCCCTTGTTTTTTAC s canFam1.chr9 23363185 17 - 53642819 TGGCTCTCT--CCTTTCCC a score=114329.0 s hg17.chr17_random 779690 316 + 2618010 TCTTCTTTTTTCTTTCTCAGAGAAGA-GCAGGTAACAATGTGGGGTTAAAGGTGAGCAGGTGGGTTAGAGTAGTGGAGCTAAAGGCAGATAGAGGTCTTGATCCAATTATCCTCATTCCCTTCATTTGTCCAACCTTGCACACTCCTGTATGCAG--------GGCCTTTGTAAGCTTCACCTTCTGTACAGGTGCCCAGCAACTGTCAAACCAGCCAGGGCTTAACATGAGCAT-GGGCATTCCCTATGGACTGGCTGGGACACACCCACATCCTTAGAT----TACACATTTTGCCTGTAACATAGATAAACTCATTACTAGGTATAT s panTro1.chr19_random 2809009 316 + 57627672 TCTTCTTTTTTCTTTCTCAGAGAAGA-GCAGGTAACAATGTGGGGTTAAAGGTGAGCAGTTGGGTTGGAGTAGTAGAGCTAAAGGCAGATAGAGATCTTGATCCAATTATCCTCATTCCCTTCATTTGTCCAACCTTGCACACTCCTGTATGCAG--------GGCCTTTGTAAGCTTCACCTTCTGTACAGGTGCCCAGCAACTGTCAAACCAGCCAGGGCTTAACATGAGCAT-GGGCATTCCCTATGGACTGGCTGGGACACACCCACATCCTTAGAT----TACACATTTTGCCTGTAACATAGATAAACTCATTACTAGGTATAT s mm5.chr11 83263311 296 + 121648857 TCTT-TGTTTTCTGTTTCTGAGAGGG-GCATGTTGCAGTGTGAGGTCTAGGGTAAGCAGGTGAGTCAGGATAATTGAGCTAAAGGT-GAGCGAGATCTTGGGTCCACCATCC-AGTTTCCTTCATTTGCCTTACTTTGAGTTTGACTGTCCCCCG--ACCCCCAGTCTTGGTAGACTGCATCTTCTACACAGGTCCCCAG------------CAGCTAGG----AACATGAGAAA-TG----TTCCTAGGGACTGGCTGGGAAACACCCATATGCTTAGGTTGGCTACACATTTTGTCTGCAGCA-----AACACTATCACTAGGTAT-- s rn3.chr10 71772980 298 + 110733352 GCTCCCTATTTCTGTTTCTGAGAAGA-GCATGTTGTAGTGTGAGGTCTAGGGCAAGTAGATGAGTCAGAGTAAATGAGCTAAAGGT-GAGTGAGACCTTGGGTCCACCATCC-AATTCTCCTCGTTTGCCTTACTTTGAGTTTGACTCTCCCCCAAAACCCCCAGCCTTGGTAGACTGCATCTTCTACACAGGCCCCCAG------------CAGCTAGG----AACATGA------GGCATTTCCTAAGGACTGGCTAGAAAACACCCATATGCTGAGGTTGACTACACGTTCTGTCTGCAGCA-----AACACTATCACGAGGTAT-- s canFam1.chr9 23363202 303 - 53642819 TCTTCACTCTTCTTTCTCAAGGCAGAGGCAGATAGCCACGTGAGGCTGGGGGTGAGAAAATGGGTCAGTGTGGATGAGCTAATGGTGGATAGAGATCTTGA-CCAACCACTCTAATTGCCCCCACGTGTCCCACCCCACGCACTACTGT--------------ATTCCTGGTTGACTTTATTCT------AGGTCAACAG-CAGTGCCCAACCAGGTAGGGCTTTCCATGAATGTAAGGAATACCCTATGGA-TGGCTGGGGAACACCCACGTGCTTATAC----TACACATTTTATCCATAACATGGTTAAGCCCATTGCTAGGTATAT a score=273.0 s hg17.chr17_random 780006 3 + 2618010 AAt s panTro1.chr19_random 2809325 3 + 57627672 AAT a score=29740.0 s hg17.chr17_random 780009 354 + 2618010 tctgttttgttttgttttggtttgttttgctttgttttgttttgctttgctttgtttttgggacagggtctcattctgtcaaacaagctggagtgcagtggcacaatcaccactcactgcagcctggactttcctgggctcaggtgatcttcccacctgagcctactgagcagctgggactacaggtgtgtatcaccactcccagtcaagttttttttttgtatgtgtgttttttatagagacagtgtttcaccatgttccccaggctggtctcaaacttctgggctcaagcaatctgcctgccttgacctcccaaagtgctgggatttcaggtgtgaggccctgtacccagct s panTro1.chr19_random 2809328 334 + 57627672 TCtgttttgttttgttttg--------------------ctttgctttgctttgtttttgggacagggtctcgttctgtcaaacaagctggagtgcagtggcacaatcaccactcactgcagcctggactttcctgggctcaggtgatcttcccacctgagcctactgagcagctgggactacaggtgtgtatcaccactcccagtcaagttttgtgtgtgtgtgtatgttttttatagagacagtgtttcaccatgttccccaggctggtctcaaacttctgggctcaagcaatctgcctgccttgacctcccaaagtgctgggatttcaggtgtgaggccctgtacccagct a score=95992.0 s hg17.chr17_random 780363 277 + 2618010 CAATTCTGTTTTTATACTAGAAGAACATTCTCTATCTGGGTCTTCCAGACTTGATTCTTACTGGTTAATTTGTCCTGGTCTTTTGCTGGTCCAAGAAAATATCTTGAAATCTTTATTTCTTCTCCGTTCCCTCCTTGTCCTAGGACAGACTAGCCCTATC-CCTTCCCTGAATTAAGTCTGAGTATAATCGGTCTTTGAGTGTGGAATAGCTCCTAGCAGTCTATCAGTCAATGGTTTCTCT--TTGTGGTCACACTCTATGTTTATTCTGGAGACtaca s panTro1.chr19_random 2809662 277 + 57627672 CAATTCTGTTTTTATACTAGAAGAACATTCTCTATCTGGGTCTTCCAAACTTGATTCTTACTGGTTAATTTATCCTGTTCTTTTGCTGGTCCAAGAAAATATCTTGAAATCTTTATTTCTTCTCCGTTCCCTCCTTGTTCTAGGACAGACTAGCCCTATC-CCTTCCCTGAATTAAGTCCGAATATAATCAGTCTTTGAGTGTGGAATAGCTCCTAGCAATCTATCAGTCAACGGGTTCTCT--TTGTGGTCACACTCTATGTTTATTCAGGAGACTACA s mm5.chr11 83263607 237 + 121648857 CAATCCT-TATTTATACT---AGAACATTC----ATTGGGTCTTTCAAACT---TTCAAACTGTTTCTCTTAT----------------TCCAATAAAATGTCCTGAAATCTCTATTTTTTCCTC-TCCTGTCCTTGTTCTA-GATAGGCTAAACCAA----CTCTTCTGAATGATG-CTGATTGAATGGTATTTCTGTGTGTGGAAGAGTCTGGAG--------TGGTCAATATCTTCTCTC-TTGTGGTCACACCCTATGTTTGTTCTGGAAATCACA s rn3.chr10 71773278 253 + 110733352 CAATCCT-TACTTACACT---AGAACATTC----ACTGGGTCTTCCAAACT----------TAGTTTCTTTCTCTATTTTTCTTATCATTCCAATATAATGTCCTGAAATCTCTATTTTTTGTCTATCCCTTCCTCGTTCTA-AATAGACCAAACCAA----CTCTTCTGAATGATG-TTGATCAGATGGCATTTTTGTGTGAGGGAGAGTCTGGAG-AGTGTG-TGAACAGTGTCTTCTCTC-TTGTGGTCACACTCTATATTTGTTCTGGAAATCACA s canFam1.chr9 23363506 266 - 53642819 CAATCCCAATTTTACACTAGAGGAACATTTTTTATTTGAGTCTTCCAAACTTGATTCTTCCT-----TTTTCTCTTTTTCTATTATCAGTCCAAGTAAACATACCAACTTCTTTATTTCTTTTCTGTTCCCTTCTTGTTCTAGAACAGACTGACCCAAACTCCTTTCCTGATTTCAGCCCTAATAAGATGGGTCTTTGTGTGTGGCATAGGCCCTAG--------TGGTCAACATTTTCTCTCTTTGTGGTCATATTCTATATTTGTACT-GAGGCAACC a score=66412.0 s hg17.chr17_random 780640 422 + 2618010 gcatggaaagaaaatggactttggagtcagatgaatcttgattcgaatcttgattcaaatcttggcagtg-ccattcatcagttctgtggcattgagcgccatcagtgga--ccactctctgatccccaattgccttatctgtaaaatgagattagacacccctgctcaagattatggtaggattatatataatatgtgtaacacagctttcccagtgcctggtacaaggtaagtgtccaata---aGAACTTACAAATGTTCCTGAGCCACCCTACTGGGTCCCTCCGCACATCCAATGCTGGA----CTCTTCATGCCCAAGGAAACATATAGGGCACAAAAGTCAGTGGCACTGAGCTCAGCAGAAGAAGGCACAGGAAGGGGATGGGGGAGTCCTGGTTCCCGCTTTGTTCTTGGGGCCAGGACAGTG s panTro1.chr19_random 2809939 409 + 57627672 GCAtggaaagaaaatggactttggagtcagatgaatcttgattc------------aaatcttggcagtg-ccattcatcagctctgtggcattgagcgc-atcagtgga--ccactctctgatccccaattgccttgtctgtaaaatgagattagacacccctgctcaagattatggtaagattatatataatgtgtgtaacacagctttcccagtgcctggtacaaggtaagtgtccaata---aGAACTTACAAATGTTCCTGAGCCACCCTACTGGGTCCCTCCACACATCCAATGCTGGA----CTCTTCATGCCCAAGGAAACATATAGGGCACAAAAGTCAGTGGCACTCAGCTCAGCAGAAGAAGGCACAGGAAGGGGATGGGGGAGTCCTGGCTCCCACTTTGTTCTTGGGGCCAGGACTGTG s canFam1.chr9 23363772 400 - 53642819 AGgtagaaagaaaatggattttagaatcagatgactcttagttc------------aaatcttggcactgccccttaaccaaccacgtgtcctggag----at-aatgaattctcctgtgtggtcctc-attgccccaagggaataatcatagt-------cctgctcatgggtatggtagggttagatgtcatgtgtatgtggaagcttgcccagtgcctggtccttagtaaatctccaataagtagaagttataGATGTTCCTCAGGTGCCCTGCTGGGTCTTTCTGCACATTCAATGCTGGACTCTCTCTTTACACCTAAGGAAATGTACAGGGCACTAAGGT------CACTCAGCTCAGTAGAAGAAGGCCCAAGAATGGGAC-ATGGATTCCTGGCTACCCCTTCCTTCTTAAGGCCAGGCTTGCA a score=131727.0 s hg17.chr17_random 781062 275 + 2618010 GCCAGCCTGGAAAGACTGGCATGAACCCTCCAGCATCTGGGGGTGCCAACCACCAAGAGCAGCACAGTTCTTGTCTACAAGCCACTTGTAGCAGGTGTGAACATTTCATCTTTTCCTCTGGGGTTTGCAA-CTCTCTCCCCAGTCTCGGTCACTGCTTTTGGCTGTACCACTTCCCTTTT--------------CTTCTCGCCTGCACCTCCCTCATCTTTCCTCTATGATGACATCGCCCTGGGGAAGAGAAGCTGAGAGGAACTCCTCAC--TCAGCTAGCTTCA-----------GGAGC s panTro1.chr19_random 2810348 275 + 57627672 GCCAGCCTGGAAAGACTGGCATGAACCCTCCAGCATCTGGGGGTGCCAACCACCAAGAGCAGCACAGTTCTTGTCAACAAGCCACTTGTAGCAGGTGTGAACATTTCATCTTTTCCTCTGGGGTTTGCAA-CTCTCTCCCCAGTCTCGGTCACTGCCTTTGGTTGTACCACTTCCCTTTT--------------CTTCTCGCCTGCACCTCCCTCATCTTTCCTCTATGATGACATCGCCCTGGGGAAGAGAAGCTGAGAGGAACTCCTCAC--TCAGCTAGCTTCA-----------GGAGC s mm5.chr11 83263844 298 + 121648857 GCCA-CCTGGAAAGATTGACTTGAAGGCTCCACTGCCTGGAGGTGCCGACCCCCAAGTGAAGTG-ACTTCTTATCCACAAGCC-TTTGTGGCAGGTGTGAACATTGCATC-CTTCCTCTCGGGTTCACAACCCCCCTTCTCTGCCCCAGTCACTATCTTTGG-TGTACCACTTCCCCCTCCAACATGCACCCCACTTCTCCACTCCATCTCCCTCCTTTCTCTTCCGTGATGTCACTGCTGGGGGGAAGACAGTCTGTCAGGAACTCCTCACTTTCAGCCAACTTCAGTTTCTTTCTCGATGC s rn3.chr10 71773531 299 + 110733352 GCCACCCTGGAAAGATTGATGTGAAGGCTTCACTGCCTGGAGGTGCCGGCCACCAAATGCAGTG-AATTCTTACCCACAAGCCTTTGCTAGCAGGTGTAAACATTGCATC-CTTCCTCTCGGGTTCACAACCCCCCTTCCCCACCTCAGTCACTATCTTTGG-TGTACCACTTCCCCCTCCAGCATGCACCCCACTTCTCCCCTACATCTCCCCCCTGTCTCTTCCATGATGTCACTGCT-GGGGGAAGGCAGTCTGTCAGGAACTCCTCACTTTCGGCCAACTTCAGTTTCTTTCTTGATGC s canFam1.chr9 23364172 274 - 53642819 GCAGCTTTGGAAAAA----CATGAAGCCTCAAGTTTCTGGAGGTGCCAACCACTGAGAACAGTACGCTTCTCATCTACAAGCCTCTTTTGGCAGATGTGAAGATTTCATC-CTTCCT------------------CTCTATAGTCTTGATCACTGTCTTTGG-TGTACCACTTCCCTCTA--TGACGCAGCCCACTTCTTCTCCA---CTACCCCCCTTTCCTCCCGTGATGACATCGCCCTGGGGAAGAGAAGCTGTGAAGGGCTGCTCTCTGTCAGCTAGCTTCAGTTTCCTTATTGGCAC a score=175769.0 s hg17.chr17_random 781337 340 + 2618010 CATGACATCATCT----CTACCATGGAAATTCCACTCACTCTCCTGTGCCCCC-ACATTTGTCCTAGGCCTCAGAGTCCCTATAAAGAGAGATTCCCAACTCAGTATCAGCACAGGACACAGCTAGGTTCTG---AAGCTTCTGAGTTCTGCAGCCTCACCTCTGAGAAAACCTCTTTGCCACCAATACCATGAAGCTCTGCGTGACTGTCCTGTCTCTCCTCGTGCTAGTAGCTGCCTTCTGCTCTCTAGCACTCTCAGCACCAAGTAAGT--CTACTTTTGCAGCTGCTATTTC--GAGTCAAGGTGTAGG------CAGAGTCCTTTTTTCTATTCATGGCT---GGC-AAAC-AGTGGG s panTro1.chr19_random 2810623 338 + 57627672 -ATGACATCATCT----CTACCATGGAAATTCCACTCACTCTCCTGTGCCCC--ACATTTGTCCTAGGCCTCAGAGTACCTATAAAGAGAGATTCCCAAGTCAGTATCAGCACAGGACACAGCTGGGTTCTG---AAGCGTCTGAGTTCTGCAGCCTCACCTCTGAGAAAACCTCTTTTCCACCAATACCATGAAGCTCTGCATGACTGTCCTGTCTCTCCTCATGCTAGTAGCTGCCTTCTGCTCTCCAGCACTCTCAGCACCAAGTAAGT--CTACTTTTGCAGCTGCTATTTC--GAGTCAAGGTCTAGG------CAGAGTCCTTTTTTCTAGTCATGGCT---GGC-AAAC-AGTGGG s mm5.chr11 83264142 332 + 121648857 CATGACATCATCT----TTACTCATGAGATTCCGTTTTCCTTCCTGCAACCCCAACCCTTGTCTTAGGCCCCAGAGTCCCTATAAAGAGGGGTTCCCAACTCAG-ATCAGCACAGCACTCGGCCAGCTTCTG---AAGCTTCTGGGCCCTGCAGTCCCAGCTCTGTGCAAACCTAACCCCGAGCAACACCATGAAGCTCTGCGTGTCTGCCCTCTCTCTCCTCTTGCTCGTGGCTGCCTTCTGTGCTCCAGGGTTCTCAGCACCAAGTAAGT--TGACTCTTCCAGCTGC---TTC--CAGCCCCCACCT------------AGTCCAGTCTTCCAACTGGGGTC---AGCTCAAT-AGTCAG s rn3.chr10 71773830 333 + 110733352 CATGACATCATCT----TTACTCATGAGATTCCGTTTTCCTTCCTGCAACCCAAACCCATGTCTTAGGCCCCAGAGTCCCTATAAAGAGGGGTTCCCAACTCAG-ATCAGCACAACACTCAGCCAGCTTCTG---AAGCCTCTGGGCCCTGCAGTTCCAGCTCTGTGCAAACCTCTCCCCGAGCAACACCATGAAGCTCTACGTGTCTGCCTTCTCTCTCCTCCTGCTTGTGGCCGCCTTCTGCGATTCAGTGCTGTCAGCACCAAGTAAGT--CAACTCTTCCAGCTGC---TTC--CAGTCCCTACTG------------AGTCCAGTCTTCCAGTTGGGGTC---AGCCCAATAAGTGGG s canFam1.chr9 23364446 345 - 53642819 CATGACATCATCT----CTACCTTGGAAATTCCATTTGCCCTCCTGTGCCTCC-ATATCTGTTTGAGGCCTCAGAGTTCCTATAAAGAGGAGTTCCCAAGTCAGTTTCAGCACAGAACACAGTTGGGCTCTG---AAGCTTCACTGTTCTTCAGTCTCAGCTCCTGAAAAGCCTCTCCTCTGCCGAGACCATGAAGCTCTGTGTGACCGTCCTTTCTCTCCTTGTGCTAGTGGCTGCCTTCTGCTCCCCGGCGCTCTCAGCACCAAGTAAGTGGCCACTCTTCCAGCTGCTACTTCTAGAGTCATGGTGTAGA------TAGTGCTGGCTTTTCTAGCTGGGTCT---GATCTAAC-GGTGGC s galGal2.chr19 258670 309 + 9463882 CGTGACATCCTCTGTCATCATCCTGGAATTTCCACTGGATC-------------GTCTCCCTGCTGACTCCAGGACTCCCTATTAAAAGGGATCTGCATCC----ATCTGCTGCAGAC-CGCCCCGCATCTGCCCGAGCTCCTG-GTCCTGCTCCGACAGCCCT------------CATCCAACGGGAAGATGAAGCTCTCTGCAGTTGTTCTCGTTCTTCTC------ATCGCATCCTTCTGCTCCCGAGCCTCCTCTGCCCCAGGTGAGT--C-----------CTGCTCTGTC--GTCTGAGAAGGAAGAACAGCTCTGAGCCTTCGTTGCCATTTCTCCTTTGAGGC-AGAG-AGCAGG a score=127729.0 s hg17.chr17_random 781677 331 + 2618010 ATCTGGGGATGGG-ACAAAAGGCAGCTAGGAAGATTGCCATGTAGTCTGCTGCTAAATGTAGAGTCTAGTAGATATTCAGTAACATTCAAGTTCCTATTTTCTTAAGAATTAGCAACCagcagaggaaaacgat--gggctggaagtcagactgttgaattggctctgcctttaattatttgttcaagcaagcccctgtccctctctgtgccttggtttccccatctgtcatatgaagggagtgcgatgt--gttctgagactgaatccagttccaatcttctagatt--TCTTTCTCGTTCTTCTCTGAAGATCCACTATTCAGAATAAGA-----CTCCTG s panTro1.chr19_random 2810961 331 + 57627672 ATCTGGGGATGGG-ACAAAAGGCAGCTAGGAAGATTGCCATGTAGTCTGCTGCTAAATGTAGAGTCTAGTAGATATTCAATAACATTCAAGTTCCTATTTTCTTAAGAATTAGCAACCagcagaggaaaacgat--gggctggaagtcagactgttgaattggctctgcctttaattatttgttcaagcaagcccctgtccctctctgtgccttggtttccccatctgtcatatgaagggagtgcgatgt--gttctgagactgaatccagttccaatcttctagatt--TCTTTCTCGTTCTTCTCTGAAGATCCACTATTCAGAATAAGA-----CTCCTG s mm5.chr11 83264474 300 + 121648857 GCTTGGGCAGGGGAACCAGAGGGAGCTGGGAAGATTCCCA---AGTCTGTTGTTAAACATGGAATCTTCCAGACAGCCATTAATCCTTAAGCTC----------------------CCAAAAGAGGGAATCCTTCACAGCCAATGGTCAGA-TATTGAATCAGCTTTCTCTCTG-------GTTTAAA------CTTGTTTGTCTTTATGCCTTGATTTCCCCACCTTTAATATGAAGCAATTGAGAGGT--GTTCTGAGTTTTGATCTAGTTTCAATCTTCTAGATT--TCTTTCCCCTTCTTCTTAGAGAAGTATCTAGTTAGAGTAGAAATATCATTCTG s rn3.chr10 71774163 310 + 110733352 GTTTGGACAGGGGAACAAAAGGGAGCTTGGAAGATTCTCA---AGTCTGTTGTTAAATATGGAGTCTATCAGACAGTCATTAATCCTTAAACTC-------CTTAAGAATTAGCAGCCAATAGAGGGAAATGGT--GGGCTGGAAGTCAGA-TATTGAATCAGCTTTCTCTCTT-------GTTTAAA------CTTGCTTGTCTTTATGCCTTGATTTCCCCACCTTTAATATGAAGCAATTGAGAAGT--GTTCTGAGTTTTGTTCCAATTTTAATCTTCTAGATTCGCCCCCCCCCTTCTTCTTTGAGAACTATCTTGTTAGAGTAGAA-----GTCTCA s canFam1.chr9 23364791 276 - 53642819 ATCTAGGG------ACAAAAGGGAGATGGGAAGATTTCCAAATAGCCTGCTGTTAAATGTAGAATCTAATAGACATTCAGTAGGAGTCAAGTTCCTATTTTCTTAAGAAATAGCAACCAGTAGA-----------------------------------------------CTC-------ATttaagcaagttcctgcctctttctgtgccttggtttccccatctataaaatgaagggagttagacacaagccctgagactcagtccagttccaatcttccaaaat--tctTTTGTGACTTTCTCTTATGATCTTCTATTCAGAATAATA-----CTCCTA a score=34425.0 s hg17.chr17_random 782008 98 + 2618010 CTCATGTTAGGTGGG----AATGGATACAAGGGACCATATTTGGGGTTCTGGTAGCTCCACAGGGATGCTCAATGAAGATGCA-AAATTAGAAGTCAAAATAA s panTro1.chr19_random 2811292 98 + 57627672 CTCATGTTAGGTGGG----AATGGATACAAGGGACCATATTTGGGGTTCTGGTAGCTCCACAGGGATGCTCAATGAAGATGCA-AAATTAGAAGTCAAAATAA s mm5.chr11 83264986 88 + 121648857 CTCATTCTGGGTGGATGACCATAGATTTCAGGGACCATGTTTTGGGTTCCAGTAG-TCCATAAGAATGCTCAATGAAGAT--------------TTATAATGA s rn3.chr10 71774473 85 + 110733352 ----TTCTGAATGGATGGCCATGGATTCAAGGGACCATGTTTTGGGGTCTAGTAG-TCCATAGGAATGCTTAACGAAGAT-------------CTTATAAGGA s canFam1.chr9 23365067 99 - 53642819 CTTAGGGTGAGTGGG----ATTGGAAAAAAAAGACCATATTTTGGGATCCAGTAGTCCTACAGAGATGGCCACTGAATATCTATTGATTAGAAACCAAAATTA a score=134279.0 s hg17.chr17_random 782106 271 + 2618010 ACAGCTCCCATGGGCAGTGTTGATCTCACCCTGGCCTTTC------CTTTCAGTGGGCTCAGACCCTCCCACCGCCTGCTGCTTTTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTGTGGTGTGAGTATCAACC----CCTGG-CTGCCCTGGGAGGCAAGGGTGAGGGCTGGATTTTTAAAGGGGGCCTGTT----TTGGGGAGGGGGTGAT-GAGCGCTGGGGAGGCAGCTCTCAGGG s panTro1.chr19_random 2811390 273 + 57627672 ACAGCTCCCACGGGCAGTGTTGATCTCACCCTGGCCTTTC------CTTTCAGTGGGCTCAGACCCTCCCACCGCCTGCTGCTTTTCTTACACCGCGAAGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTGTGGTGTGAGTATCAACC----CCTGGGCTGCCCTGGGAGGCAAGGGTGAGGGCTGGATTTTTAAAGGGGGCCTGTT----TTGGGGAGCGGGTGATTGAGCGTTGGGGAGGCAGCTCTCAGGG s mm5.chr11 83265074 250 + 121648857 ACAGTGCCTG-GTACAGTTTTGACCTTACCCTCACTTTTC------CTTCCAGTGGGCTCTGACCCTCCCACTTCCTGCTGTTTCTCTTACACCTCCCGGCAGCTTCACAGAAGCTTTGTGATGGATTACTATGAGACCAGCAGTCTTTGCTCCAAGCCAGCTGTGGTGTAAGT----ACA----CATTG-----------------GGATGAGGGCAAGA-TTCGAAAAGGGCCAGGTT----CAGGTGAAAATGTTATCTAACTGACGGGGGTCAATTCTAAGGG s rn3.chr10 71774558 250 + 110733352 ACAGTGCCTG-GCACAGTTTTGACCTTAGCCTTACTTTTC------CTTCCAGTAGGCTCTGACCCTCCCACTTCCTGCTGCTTCTCTTACACCTCCCGGAAGATTCATCGGAACTTTGTGATGGATTACTATGAGACCAGCAGCCTTTGCTCCCAGCCAGCTGTGGTGTAAGT----ACA----TACTG-----------------GGGTGAGGGAATGA-CAGGAAACTGGCCAGGTT----CAGGTGAAAATGCTATATAACTGACAGGGTTCTGTTCTAAGGG s canFam1.chr9 23365166 268 - 53642819 ACAAGTCATA-G---AGCTTCTATCTCACCCCTGCCTTTC------TTTCCAGTGGGTTCAGATCCTCCTACTGCCTGCTGCTTCTCTTACACCCTGCGGAAGATTCCTCGCAACTTTGTGGCAGATTACTTTGAGACCAGCAGCCTCTGCTCCCAGCCAGCTGTGGTGTGAGTATCAACC----CTGGGTCTGTTCTAGGAGGCAGGGGTGAGGGCAGGATTAGAAAATGGGGCCTACT-----GGCAGAAGATGGAAGCAAACAGTAGGGAGACAGGTCTCAGGG s galGal2.chr19 259328 283 + 9463882 ACAGCTCCCTCAGCCCACCCCGCACTCATGCTGTCTCTCCCTGCCTCTTCCAGTGGGACCCGACGTCCCGA---CCTGCTGCACCACTTACATAACACACAAGATCCCGCGGAACCTCATCCAGAGGCACTACAGCACCAGCACCAGCTGCTCAAAGCCTGCCATCATGTAGGTACCGATCTGAACGTGGTGTGGGTGTGTGGGATTGGCTGAGGGCTGCA-GGTCAAAGAGCACACGGTGCGCTGTGTGCAAGGCAGGGGGAACGAAGGGGAAAAGGCTGGCACGG a score=21075.0 s hg17.chr17_random 782377 113 + 2618010 CTGAAGCCTTCCCTGACAGCAGTGAGGTCACAGGTCATGAACTCACTTTTCAAGTGCTGAAGG---CGGCTGAGT--GGCAGCCGAGACAG---AAG------GGGGTTCCT-GGGGAGGAAGTTATT s panTro1.chr19_random 2811663 113 + 57627672 CTGAAGCCTTCCCTGAGAGCAGTGAGGTCACAGGTCATGAACTCACTTTTCAAGTGCTGAAGG---CGGCAGAGT--GGGAGCCGAGAGAG---AAG------GGGGTTCCT-GGGGAGGAAGTTATT s mm5.chr11 83265324 101 + 121648857 TTGAAGCTCTGCCAAAGAACAGTGAGGTCATGGG-------------------GTTCTGGTGG---CTGCTGGATG-GGCAGTAAAGTGTG---GAGTCAGGAATGGCTTTT-GGGGAGGAAGTTGCT s rn3.chr10 71774808 95 + 110733352 TTGAAGCTCTGGTGAAAAACAGTGAGGTCAGGAG-------------------GTTCTGGTAG---TTCCTGGATG-GTCAGTAACATGTG---AGG------ATGGCTTTT-CGGGAGGAAGTTACC s canFam1.chr9 23365434 115 - 53642819 CTGAAGCCCTTCCAGAAATCAGTGAGGAT-CAAGCCATGAAATTACCTGTTGAGT-CTGGAGG---AGGTTGGGT--GGGGGCCAAGGGAAGGCAAG------GGGACTTTTGGGGGAGGAATTTAGC s galGal2.chr19 9211824 90 - 9463882 TTGGAGCT-------------GGGAGG-----------GGAACCACTCC----TTTCTGGGGGGATAGAATGGATGTGGAGACAATGAGTG---CAA------GGGGATGCT-GGTGGGGCTCACACT a score=2821.0 s hg17.chr17_random 782490 34 + 2618010 ------CAGAGGACAGGGAAGCAGGGGAAGGCAGACAGGT s panTro1.chr19_random 2811776 34 + 57627672 ------CAGAGGACAGGGAAGCAGGGGAAGGCAGACAGGT s mm5.chr11 83265425 37 + 121648857 ACACGCTACGGAACTAGAAAACAGAAGATGACGCATA--- s rn3.chr10 71774903 32 + 110733352 ACAGGCTACGACACTAG-AAACAGAAGACAATG------- s canFam1.chr9 23365549 34 - 53642819 ------CAGAGGCCAGGAAACCAGGGAAACTAAAAAAGAT a score=24472.0 s hg17.chr17_random 782524 109 + 2618010 CCCGTGAGATATGGACCAATT-CCTT--AAACCATGC----------TAGAAAAACATGTGGAAAAGTCACTACCAGG-----CTGGCAGGGAATGGGGCAATCTATTCATACTGATTGCAATGCCC s panTro1.chr19_random 2811810 110 + 57627672 CCCGTGAGATATGGACCGATTTCCTT--AAACCATGC----------TAGAAAGACATGTGGAAAAGTCACTGCCAGG-----CTGGCAGGGAATGGGGCAATCTATTCATACTGATTTCAATGCCC s mm5.chr11 83265462 97 + 121648857 --CATACTATTTAGATAGATT-GCTT--AAACTATGT----------TAGAAGAGCATGTAGAAAGGGCATT---------------TGAAAAATTGGGAGACATATTCATATTGATTATCAAGCCT s rn3.chr10 71774935 93 + 110733352 --CATATTATATAAATAGATT-GCTT--AAACTATGT----------TAGAAAAACATGTAGAAAGGCCATT---------------TGAAAAATTGGGAGACATAGTCATATTAAC----AAACCC s canFam1.chr9 23365583 108 - 53642819 GACAGGAGATGT----------GCTTAGAAACTGTGCT---------TAGAAAAACATGCAGAAAAGTCATTGCTAGGGGCAATAGAGACTGAGTAGGGTGATGTATTCATTTTGATTGCAAAACTC s galGal2.chr19 9211937 94 - 9463882 CCCGTGTGGTCAGCATCACGT-GCCC--GGATTGTGCCAACGATCAGCAGGAGAGGGTGTGGAG-----------------------TGGAGAAGAAGGGGTCACCTCCAT-------GCAGGGCTT a score=52880.0 s hg17.chr17_random 782633 154 + 2618010 ACTGGTTcctaatctgggcaacccctggggcccacagctaaatccagtgagtggaagttacagggagtctgcttccagtgctgctcgaggaaggat-cccatccaccagagctgccccacatggaccatggtcaggcagaggaagat--------------------------------gcctacca s panTro1.chr19_random 2811920 154 + 57627672 ATTGGTTcctaatctgggcaacccctggggcccacagctaaatccagtgagtggaagttacagggagtctgcttccagtgctgctccaggaaggat-cccatccaccagagctgcccCACATGGACCATGGTCAGGCAGAGGAAGAT--------------------------------GCCTACCA s mm5.chr11 83265559 170 + 121648857 GTTGTTTTCTAATATAGGGAACCCCTGAGG-CTGCAGCTACACCTA-TGGGTCAGAGTTATAGGGGGTCTAATGTAGGGTC--ATCCAGAAAGGAT---GATGTACTATGGCTA-CCCATACAAACAATGGTCAAGCAGAACATGATTTCCAAGTCTGCTGTTAA---------ATAGAGTCTATCA s rn3.chr10 71775028 167 + 110733352 ATTGTTTTCTAATATAGGGAACCCCTGAGG-CTGCAGCTATGCCA--TGGGTTAGAGTTTCAGGGAGTCTAATGTAGGGTC--ACGCAGGAAGGAT---GATCTACCGGGGCTA-CCCATACAG----TGATCAAGCAGAACAAGATTCCCAAGTCTG-------CTATCAGATATAGAGTCTATCA s canFam1.chr9 23365691 151 - 53642819 ATTTGTTcctaatctgagcaacccaagagg--tggagctaaatcc--agagtagaagttgcaaggagtccagttttagcaccaccccaggaagttttcccatctattagagctatccaaCATATACCATGGTCAAGCAGAGGAAGAT--------------------------------ACCTACCA a score=100.0 s hg17.chr17_random 782787 1 + 2618010 c s canFam1.chr9 23365842 1 - 53642819 C a score=-150.0 s hg17.chr17_random 782787 1 + 2618010 c s panTro1.chr19_random 2812074 1 + 57627672 C s mm5.chr11 83265883 1 + 121648857 G a score=100.0 s hg17.chr17_random 782787 1 + 2618010 c s rn3.chr10 71775203 1 + 110733352 C a score=11492.0 s hg17.chr17_random 782788 32 + 2618010 aggcaagggataaagccagatgaccTCAAAGG s panTro1.chr19_random 2812075 32 + 57627672 AGGCAAGGGATAAAGCCAGATGACCTCAAAGG s mm5.chr11 83265884 32 + 121648857 AGGCAAAGGACAGTGGTAGATGTCCTCTAAGG s rn3.chr10 71775326 32 + 110733352 AGGCAAGGGACAGTGGTAGATGCCCTCTAAGG s canFam1.chr9 23365843 8 - 53642819 AGGC------------------------AAGG a score=115633.0 s hg17.chr17_random 782820 144 + 2618010 TCCCATGGGATTCTAATCTGTCTGCTCCTTGTTCTACAGATTCCAAACCAAAAGAGGCAAGCAAGTCTGCGCTGACCCCAGTGAGTCCTGGGTCCAGGAGTACGTGTATGACCTGGAACTGAACTGAGCTGCTC-------AGAGACAGGA s panTro1.chr19_random 2812107 144 + 57627672 TCCCATGGGATTCTAATCTGTCTGCTCCTTGTTCTACAGATTCCAAACCAAAAGAGGCAAGCAAGTCTGCGCTGACCCCAGTGAGTCCTGGGTCCAGGAGTACGTGTATGACCTGGAACTGAACTGAGCTGCTC-------AGAGACAGGA s mm5.chr11 83265916 150 + 121648857 TCCCATGGGGTTCTCATCTGTGCTCTCTTTCTTTTACAGATTCCTGACCAAAAGAGGCAGACAGATCTGTGCTAACCCCAGTGAGCCCTGGGTCACTGAGTACATGAGTGACTTGGAGTTGAACTGAGCAGCTCCA-GCGGCAGGGCAGGA s rn3.chr10 71775358 150 + 110733352 TCCCATGGGGTTCTCATCCATCCTCTTTTTCTTCTACAGATTTCTGACCAAAAAAGGCAGGCAAATCTGTGCCGACCCCAGCGAGCCCTGGGTCAATGAGTATGTGAATGACTTGGAGTTGAACTGAGCAGCTCCA-GACTCAAGACAGGA s canFam1.chr9 23365851 151 - 53642819 TCCCATGGGATTCTAATCTGTCTATTCCTTGTTCCACAGATTCCAAACCAGAAGGGGCAGACAAGTCTGTGCTAATCCCAGCGAGCCCTGGGTCCAGGAATACATGGATGATCTGGAACTGAACTGAGCTGCTCCAGGTCAAGGTGCAGGA s galGal2.chr19 9212031 136 - 9463882 TCCCATGGGA-TCTCACCTGGCTGCTCC-----CTGCAGGTTCATCACCAGGAAGGGCCGTGAGGTCTGTGCCAACCCCGAGAACGACTGGGTACAGGACTACATGAACAAGCTGGAACTGAACTGA--TGCAC-------CAGGATGGGA a score=142102.0 s hg17.chr17_random 782964 413 + 2618010 AG----TCTTCAGGGAAGGTCACCTGAGCCTGGATGCTTCTCCATGAGCCGCATCTC-CTCCATAC--TCAGGACTCCTCTCCGCAGTTCCTGTCTCTTCTCTTAATGT-AATCTCT-TTTATGTGCTGTATTATTGTATTAG----GTGTTATTTCCATTATTTATATTAGTTTAGCCAAAGGA----TAAGTGTCCCCTATGGGGATGGTCCACTCTCACTCTTTCTCTGCTGTTGCAAATACATGGATAACACCG-----TTAATTCCATGTGTTTTCATAATAAA----ACTTTAAAATAAAATGCAAACAGTTTCTTTGTGATTTTAATT-TGATTTGGGGGTAAA-AGGAATTGCCTGGTACCATTGGGCGGTGGGGCAAGCTACAGTTTCCAAAAGCAGTAAGAATGCGcaattgctgagtccttaatatgagc s panTro1.chr19_random 2812251 413 + 57627672 AG----TCTTCAGGGAAGGTCACCTGAGCCTGGATGCTTCTCCATGAGCCGCATCTC-CTCCATAC--TCAGGACTCCTCTCCGCAGTTCCTGTCTCTTCTCTTAATGT-AATCTCT-TTTATGTGCTGTATTATTGTATTAG----GTGTTATTTCCATTATTTATATTAGTTTAGCCAAAGGA----TAAGTGTCCCCTATGGGGATGGTCCACTGTCACTGTTTCTCTGATGTTGCAAATACATGGATAACACCG-----TTAATTCCATGTGTTTTCATAATAAA----ACTTTAAAATAAAATGCAAACAGTTTCTTTGTGATTTTAATT-TGATTTGGGGGTAAA-AGGAATTGCCTGGTACCATTGGGCGGTGGGGCAAGCTACAGTTTCCAAAAGCAGTAAGAATGCGcaattgctgagtccttaatatgagc s mm5.chr11 83266066 378 + 121648857 GGAGCCACTTCAGGAGAGGCCTCCTCAGCCCTGATGCTTCTCACTGAGAAGCG------TCCTTGC--TC----CTCACGTTCAGATTTCCTGCCCCTCTTCTTAATTTAAATCTCTGTGTAGACTTTGTTTTGTTTTTTTGGGGGAGTATTATTTCTATTATTTATGT---TTTAGTTATAGGA----CGCGTGTCTCCCATGGAGATGGTCCACCATTGCTGTTTCTCTGCTATTG--------TGGATATGACTGTGAAATTGATTTCATGCATTTTCATAATAAATCTTTCTTTAAGATATAG--------------TTGTGATTTTGCCT-TGATTCTGATTTAGGTTGAAACCACCTGGTGCTATTAGGT------ATAAACCACAGTT---------------ACTGAGTAAATGCTGAGACCCTTACAAGTGC s rn3.chr10 71775508 382 + 110733352 AGAGCCACTTCTGGAAAGGCCTCCTCAGCCCTGACACTTCTCATTGAGAAGTACCTTGCTCCTTACATTCAGATTTCCTGTCC----------------TTCTTAATTT-AAACCTG-TGTGTAGACTTTGTTATTTTGTTTG----GTATTATTTCCATTATTTATG----TTTAGTTATGGGA----TATGTGTCTCCCATGGAGATGGTCCACCATTG-TGCTTCTCTGCTATTG--------TGGATATGGCTGTGTAATTGATTTCATGCAATTTCGTAATAAATCTTTCTTTAAGATATAGTTGTGA--------TTTTTATCTTGATTCTCATTTGGGT------TGGAACCACCTGGTGCTATTAGGT------ATAAACCACAGTTTGCAAAGGCAGCGAGACTGAGTAAAGGCTGAGACCTTAACAAGTGC s canFam1.chr9 23366002 399 - 53642819 GG----TCTCCAGGGAAGGTCACCTGAGCCC-AATGCTTCTCA-TGAGACGCACCTT-CTCCACAC--TCATGACTCTTCTCAGTAG--ACTGTTCCTTTTCTTAATTT-AATCGTA-T-TATGTGTTGTGTTATTGTATTTG----AACTTATTTCTATTATTTG------TTTTGCCAAAGGACACTTACTTGTCCCCCATGGGGATAGTCTACCATCATTGTTTCTCTGCTATTGTAGATATATGAATAATGCAA-----CTGATTCCATATGTTTTCAAAATAAA----ATTTCTAAA-AAATTATAGACAATTTCTTTGC-ATTTTAATT-TGACTTGAGG-TGAA-GGGAATTGCCTCATATTAT--GAC--TGGGACAAACTACAGTTTCCAAACACAATAAGGACAAGCAATTACTGAGTACTTAATATGGGC a score=5604.0 s hg17.chr17_random 783377 18 + 2618010 tctgggctgaacactctt s panTro1.chr19_random 2812664 18 + 57627672 tctgggctgaacactctt s mm5.chr11 83266444 18 + 121648857 TCTTGGCTATGTGCTCTC s rn3.chr10 71775890 18 + 110733352 TCCTGGCTTTGTGCTCTC s canFam1.chr9 23366615 18 - 53642819 TATGGGCTAATATGTCTA a score=6270.0 s hg17.chr17_random 783395 41 + 2618010 aatacatgatctcactgcgtactttcaacaagggttttaac s panTro1.chr19_random 2812682 41 + 57627672 aatacatgatctcactgcgtactttcaacaggggttttaac s rn3.chr10 71775908 38 + 110733352 ---AAAAAACTTCTGGCCATACTTCTAATGAGAATGTTATC s canFam1.chr9 23366633 40 - 53642819 AAGATATGATATCACTCAACAATTTCAATGGGATTTTAAA- a score=711.0 s hg17.chr17_random 783436 3 + 2618010 acc s panTro1.chr19_random 2812723 3 + 57627672 acc s rn3.chr10 71776344 3 + 110733352 TTC s canFam1.chr9 23366673 3 - 53642819 ACc a score=51232.0 s hg17.chr17_random 783439 170 + 2618010 cttatgaagtagggactgt-tgcccccagtttcacagttaaggaaagagaggcacagagaggtgaagtgacttgcTGAGGCTAGTAGGTCTG-CTTGGGGAGTG---TCATGAAAAAATGCCT-----TTAAAAAG-------------GAGGTTATCATTTCAACATCTTGTGGGG----GGAGTTGTAAAGAGGG s panTro1.chr19_random 2812726 170 + 57627672 cttatgaagtagggactgt-tgcccccagtttcacagttaaggaaacagaggcacagagaggtgaagtgacttgcTGAGGCTAGTAGGTCTG-CTTGGGGAGTG---TCATGAAAAAATGCCT-----TTAAAAAG-------------GAGGTTATCATTTCAACATCTTGGGGGG----GGAGTTGTAAAGAGGG s mm5.chr11 83267223 123 + 121648857 TGTATGAAGTGGGCGCTGG-TGCCCACAGTTTTACAAAGGAAGAAACAGAGACACAGAGA---GAAGGGATTTTCTGAGGCTTGTAAATTTGATTTGGAAAGCA---TTGTGAAA-------------------------------------------------------------------GAGTAATCTAGAGGG s rn3.chr10 71776347 186 + 110733352 TGTATGAGGTGGGTACCAG-TGCCCACAGTTTTACAAATGAAGAGACAGAGACACAGTGA---GAAGGGATTTTCTGAGGCTTATAGATCTG-CTTGGGAAGCAT--TTGTGAAAGAGTAGTCCAGAGTGACAAAGTTG----ATCCTAAGGTTTATCAGGCCAACATTCTGGGTGGGGGCGGGGCTGTGAATAGGG s canFam1.chr9 23366676 184 - 53642819 cttatgaagtaggaactggttatctccaattttacagatgaggaaacagaggcacagaga--ttatgtgacttgctaaaCCTTATGGATCTG-CTGGGGTAGTAGCATCATGGAAGGACGATC-----CAAAAGGATAGCTATATGCTAAGAGGTAACATATCAATATTCTGTAGGA-----AAGTTGTGAATAGCA a score=2577.0 s hg17.chr17_random 783609 11 + 2618010 GAAGCAGCACA s panTro1.chr19_random 2812896 11 + 57627672 AAAGCAGCACA s rn3.chr10 71776533 11 + 110733352 GATACAGTACA s canFam1.chr9 23366860 11 - 53642819 GTAGCAGCAGC a score=17953.0 s hg17.chr17_random 783620 97 + 2618010 -----GCA-AAGGCGGAAG-----AAGAGTGAGAAAAGTga--cttcatcatattattatcagcataacattgggaaagtcatcttgctttattagacctcagtgttcac s panTro1.chr19_random 2812907 97 + 57627672 -----GCA-AAGGCGGAAG-----AAGAGTGAGAAAAGtga--cttcatcatattattatcagcataacattgggaaagtcatcttgccttattagacctcagtgttcac s canFam1.chr9 23366871 109 - 53642819 ACAATGTAGAAGGCGGAAGTGGTTCAGAGTCAGAAAAGTGGGCCTGCATGAC-TTATTATTGGCATACCAttaggaaagtcatcttgccttactggacctcgattttcac a score=-1533.0 s hg17.chr17_random 783717 60 + 2618010 aagtgtgaaatgtagataatattaacatttatctacataaatgttacgtagattTATGTA s canFam1.chr9 23366980 5 - 53642819 -------------------------------------------------------accta a score=2215.0 s hg17.chr17_random 783717 26 + 2618010 aagtgtgaaatgtagataatattaac s panTro1.chr19_random 2813004 26 + 57627672 acgtgtgaaatgtagataatattaac a score=-89.0 s hg17.chr17_random 783777 16 + 2618010 GATAAAGGGCT---GTTTA s mm5.chr11 83267402 19 + 121648857 GATTAGGGGCTACAGTGTA s canFam1.chr9 23366985 16 - 53642819 gacagtgagag---TTTCA a score=0.0 s hg17.chr17_random 783793 10 + 2618010 TCTACATATG a score=0.0 s hg17.chr17_random 783793 5 + 2618010 TCTAC a score=575.0 s hg17.chr17_random 783798 3 + 2618010 ATA s mm5.chr11 83267421 3 + 121648857 ATA s rn3.chr10 71776544 3 + 110733352 ATG a score=667.0 s hg17.chr17_random 783801 2 + 2618010 TG s panTro1.chr19_random 2813035 2 + 57627672 cg s mm5.chr11 83267424 2 + 121648857 CG s rn3.chr10 71776547 2 + 110733352 TG a score=39278.0 s hg17.chr17_random 783803 287 + 2618010 AAGGGCTGTTACGAGGTGATGTGTAAAGCACCCATCAT-GGGACTGGGCACCTGGAAGATTCTCTCCTTCcccctctgagcctcagccttttcacttaaaatggacctaacaattgtc-----aggatcatcatgaggattagattagttagtTGACAGATCAGCACTCTAAAGCCCAAG-TTACTGTGAAGTGTTGTCATGATGACAGAAGGATGGAGGTCTGGTTTTGTTTGGAAGTGTTGCAGGAGTAACCTAAAGCCACTTC-----TACTTAATTATCCTTCAATCAGTACTCC s panTro1.chr19_random 2813037 287 + 57627672 aagggctgttacgaggtgatgtgtaaagcacccatcat-gggactgggcacCTGGAAGATTCTCTCCTTCcccctctgagcctcagccttttcacttaaaatggacctaacaattgtc-----aggatcatcatgaggattagattagttagtTGACAGATCAGCACTCTAAAGCCCAAG-TTACTGTGAAGTGTTGTCATGATGACAGAAGGATGGAGGTCTGGTTTTGTTTGGAAGTGTTGCAGGAGTAACCTAAAGCCACTTC-----TACTTAATTATCCTTCAATCAGTACTCC s mm5.chr11 83267426 180 + 121648857 GAGGG-------AAGGGGATGTG--GTGCATCCA-------GAAAGAGGAC----AAGGTTTTC---------------------------------------------------------------------TGAAGTTCATCTTAGTC-----ATGGGTCACCAATCTAAACCATAAA------GCAAATGG-------GATGACAGAAGCCAGAGTGTCCGGTTTGGCTGTAAAATATC-----AATGGCCT-AAGCTATGAC-----TACTTTATAAGTCTT-AGTCATCACTTA s rn3.chr10 71776549 179 + 110733352 GAGGG-------GAGGGGGTGTG--GTGCAGCCA-------------------GAAAGG-------------------------------------------------------GGAC-----AAAGTTTTC-CGAAGTTCATATTAGTC-----ATGGGTCACCAATCTAAACCATACA------GCAAATG--------GATGACAGAAGCCAGAGTGTCCTGTTTGGCTCTAAAATATC-----AATGGCTT-ACACCATAAC-----TACTTAATAATTCCC-AGTCATAACTTA s canFam1.chr9 23367001 287 - 53642819 AAGGGCTATTGTAAGGTGACATGTACATTACCCATTGTGGGGGCCtgacatttggaagattctttcctt----ctctgagcctcagcattctcacttaaaatgggcatggtgcccatcctcctagggtcatcatgtagattagcttagtta----gtGAATAAGCTCTCTAAAGGCCAACACAAATATGAAATGTTATCATGAGAACAGAAGAGTGAATATCAGATCTAGTTCTGGATGGTGGCAGGAGTAACCTAGAGCCACAGCTTATTTCCTTAATTCATCCT----CAGAACTTC a score=1117.0 s hg17.chr17_random 784090 5 + 2618010 CATTC s panTro1.chr19_random 2813324 5 + 57627672 CATTC s mm5.chr11 83267606 5 + 121648857 CTTTA s rn3.chr10 71776728 5 + 110733352 CTTTA a score=265251.0 s hg17.chr17_random 784095 1029 + 2618010 CATGGGTCAGAGACTACATGGCTCTGAAATTGAATTACATGCACAATAAAGCC-TGATCCACAGGAcatagactcatggtctactaaagct--aaaaggaaac-tttagaccatctggtccaaccctctcattttatggaaactgagggagaaggcctgggaagtaacttgccacgtgccactcaacgagt-acatagcagagcaggagcctggccagtgccagctcccaagctcag-gccctttcctgcacacattcCCTAGTGACACACCTCTGTGGTCCT---------------CAAAAGGGAGACCGGTTGAGTAA---GGACAAGGCAGAGACTACCTTGAAAATCATTTGAGTGTTGTTAGTCCTGTGCAAAAGCAGAACTGGGGCCCTGTACTTCTCTGGGGTCAACAGACACAATTCCCTTCCTTGTCCTGCCCTTAGTCACCTCCGTCATTCCAGAGCCCCAGTGGAAACTTACTTCAGATTCTGCGGGCACTGAGAGAAGGAGGTTAGGGGGCAGAGCTGATCCAAAACAGGTGTGGGAAGAGGCTAGCAGCAAAGAATGTGCCTGGCCATAGTTTCTGC-TTTCATTTGCCTAGATCCGAgctatctaatatgttagccactggcca-aagcggc----tatttac--attttcattacatt----------------------taattaaaatgaaat---aaaatttaaaatttagttcctgagtcacactagtcacatttcaagtgctca-gtagaccttggtaacatg-----gctagttaccaggttagacag---catgca----ttatggactttctgtccatcattgcagaaagttctgttggagagcAGTCTCCTAGAATGTTCTCAGAGCCTAAAGAGAGTGAAGGGAGGAGCAGTT-GGGATGGTCTGTAAGATTAGGGTGCAGA-TTTGGAGAAAGATACACA-ATTCTATTCTGAGGGGACGGGATGGGAGAGAGAATGGATGACCCCAAG-CCAGAGACAAGGTATAGATCACtatggta-gctgaataatggc-ccccaagacatccacatcctattccccagaacctgtgaatgtca s panTro1.chr19_random 2813329 1029 + 57627672 CATGGGTCAGAGACTACATGGCTCTGAAATTGAATTACATGCACAATAAAGCC-TGATCCACAGGAcatagactcatggtctactaaagct--aaaaggaaac-tttagaccatgtggtccaaccctctcattttatggaaactgagggagaaggcctgggaagtaacttgccacatgccactcaatgagt-acatagcagagcaggaccctggccagtgccagctcccaagctcag-gccctttcctgcacaCATTCCCTAGTGACGCACCTCTGTGGTCCT---------------CAAAAGGGAGACCGGTTGAGTAA---GGACAAGGCAGAGACTACCTTGAAAATCATTTGAGTGTTCTTAGTCCTGTGCAAAAGCAGAATTGGGGCCCTGCACTTCTCTGGGGTCAACAGACACAATTCCTTTCCTTGTCCTGCCCTTAGTCACCTCCGTCATTCCAGAGCCCCAGTGGAAACTTCCTTCAGATTCTGCGGGCACTGAGAGAAGGAGGTTAGGGGACAGAGCTGATCCAAAACAGGTGTGGGAAGAGGCTAGCAGCAAAGAATGTGCCTGGCCATAGTTTCTGC-TTTCATTTGCCTAGATctgagctatctaatatgttagccactggcca-aagcggc----tatttac--attttcattacatt----------------------taattaaaatgaaat---aaaatttgaaatttagttcctgagtcacactagtcacatttcaagtgctca-gtagaccttggtagcatg-----gctagttaccaggttagacag---catgca----ttatggactttctgtccatcattgcagaaagttctgttggagagcAGTCTCCTAGAATGTTCTCAGAGCCTAAAGAGAGTGAAGGGAGGAGCAGTT-GGGATGGTCTGTAAGATTAGGGTGCAGA-TTTGGAGAAAGATACACA-ATTCTATTCTGAGGGGACGGGATGGGAGAGAGAATGGATGACCCCAAG-CCACAGACAAGGTATAGATCACtatggta-gctgaataatggc-ccccaagacatccacatcctattccccagaacctgtgaatgtca s mm5.chr11 83267611 879 + 121648857 CATAGGCCAGAGAGAAT----------AGTAGAATTGAATGAATCAT-AGGTC-TGATTGACAGTTCATAGACTTGAAGTGTGTTGAAGCTGAGAAAGAAGCC-CTTAGGCTGTCTGGTCTAA--CTCTTGTTTTGTGGAAAAAGAAACTAAAGA-CTGGGAAAT-ACTTGACAAAGGCCAGTCAGTGTGTGACACTGCA-------------GCCAATGTCAACCCACAG--TCAGTACCCTGTACTGGGCTTCTTTCCTGGTGAAACACTTGTGTGGTCCC---------------CAAAGGGAGGTCTCCCCAAGTAACACAGACAAGGAGAAGACAGCCCAGAGAGCCATTTCAGCCTTGCC--TTTTGTATAAAAGTGAAACCGAA--CCTTCATCT---TGGAGCCAACAATCACAATTCCCTTCCTTATCCTACCTTCAGCCACTCCTAGCATCCCAGCTACTCCATGGAAA-------------------------------------------------CAGATCTAAAGCAGGTCTG---ACAGGCTAGCAACAAACAACTTT--------TAGTTTCTGG-TTTCTTCTGTCTGTATTTGAGATGTCCGATACATTAGCCACTGATCA------GC----TGTCTTC---------TTAAATT----------------------TCAATAAAATGCAACAGAAAAAAATTAAATTCAGCTTCTTCATCACATCATTCACAT-----GTGCT--------------------------GATGGCTACTGTGTTAGAAAGTACTATGCAGAACCTGTGCAGCACCTACCTCTCGTCATAGAAAGTTCCATTGCATGGCA-CCTTTTTGAAAGT-----------------AGCGATCAGAGAAACA----AGGGTAGTGGAGAAGGTTATAGTACAGA-TTCAG----AGATGTGCA-ACTCCATTCTGAGTGGATGGTACTGGAGA-AAAATGGATGGTCCTTGGAATTGAGACAAGGTACAGAGTA----------TTGAACAGTGGCTTCCTGATGTGACCACACTCTAATCTCCAGAACCAGTCATTGTCA s rn3.chr10 71776733 854 + 110733352 CCTAGGTCAGAGAGAAC----------AGTAGAATTGAATGAATGGT-AGGTC-TGATGGATGCTTCATAGACTTGAAGTGTATTGAAGCTGGGAAAGGAACC-CTTAGGCTGTATGGTCTAA--CTCTTGCTTTGTAGAAACAGAGGCTAACAG-CTGGAAAAT-ACTTGGCAAAGGCCACTCATTGTGTTATGAAGCAGCACTGCA-----GCCAATGCCAACGCACAGG-TCAGTACCCTGTACTGGGCTTCTTTCCTGGTGAAACACTTGTATGGTTCC---------------CAAAGGGAGGACTCCCTGAGTCATATAGACAAGGAGAAGATGGCCTTGGAAGCCA----AGCCTTGTC--TTTTGTAGAAAAGTGAAACCAAA--CCTTCTTCT---CTGAACCAACAAGCACAGCTCCCTCCAGTATC--------AGCTACTCC------------------------------------------------TTAGAAA-------------------CAGATCTAAAGCAGATCTG---ACAGGATGGCAGCAAACAACTTT--------TGACTTCTGG-CTTCCTCTGTCTGTATCTGAGATGTCTGATACATTAGCCACTGGCTA------GG----TGTCTAC---------TTAAATT----------------------TCAATAAAATGCAAC---AAAAATT-ATATTCAGCTTGTCCATCACACCATGCTCAT-----GAGCTGATGGCTACCTCATTAAAAAG-----------TACTAGTGTAGAACC---CATGCA-----------GAACCTACCTCTCATCACGGAAGGTTCTGGTGCATGACA-CCTTCCTGAGAGT-----------------GGTGGTCAGGGAAGCC----AGGGTAG-CGGGAAATCTATAGTATAGA-TTCAG----AGATAGAAA-ACTCCATTCTGAATGGATGGAACTGGAGA-GAAATGGATGGTCCTTGGAACTGAGGCAAGGTACAGAGCC----------CTGAACAATGGCTTCCCGATGTGACCACATCATAATTCCCAGAACCAATCATTGTCA s canFam1.chr9 23367415 958 - 53642819 CATGGGTCAGAGAGAACATGGGTCTGGAATAGAATTACATGTATGATCAAGTCTTGATTCATGGGACTtagaattttagtctattaaaagt--tcagggaccctctcagaccatctggtccaa--ctcat-ttttttggaaaccgagagccagggactgagaagtgacttactagaggcaattcagcaagt-gtgtcacaga---TGACTTTAGCTAATTCCAAATCCCAGG-TAAA-TCCCTTTTCCATAC-----TCCTGGTGACATTCCTTTGTGCCCCCCCCCCCCAACACACACAAAGGAATGATCCATTGTGTAAGTAGGGTGAAGAGGGGCTGACCTTGAAAATCGCTTGAGTGTTCTTGGCCCAATGCAAAAGCAGAACTGAGACAATGTACCTTTCCGGAGCCAACAA--AAAATTCCCTTCCTTGTTCTGCACTTAGCCACCCTCATCATCCCAGAGC------------------------------------------------------------CTGAT------------------GGGGCT------------------------TGGCTTTTGCTTTTCATCTTCCCACATCTGAAGTGTCCAGTGTATTAGCCACTAGCCACAAGTGGCTCAGTAATTGCTCATCCTTATTGTGTTTGGAAACTGTAGTTTGTCCCAGTCATAAACAGGaaat---aacatttaaaattcatttcctcagtagcactagtcacaatccatgtgctca--------ttagctacatatgcttcatggctgccatgttggacag---tgaaga-----tataaagcattt--ccaccatcacagaaagttccattgaatggca-ctgTCCTAAAGAC--ACAGAACCTAAAAT-AGTGAAGGGACGGGGTGTTGGAAGTAGGCTGGAAAGC-AGGGTGTGGACTTTGGTGAAAGATACATATACTCTGTTCTGAGGAAAGTGGTTGGGAGAGAAAATGGATAATCCCCGGGCCTAAGACAAGGTATAGATCACCAtagtaggctgaataatggc-catgaagatgtccacatcctaatccccagaacctgtgaggattg a score=29.0 s hg17.chr17_random 785124 3 + 2618010 att s panTro1.chr19_random 2814358 3 + 57627672 ctt s rn3.chr10 71777587 2 + 110733352 -CC s canFam1.chr9 23368373 3 - 53642819 cct a score=2637.0 s hg17.chr17_random 785127 8 + 2618010 tgtatggc s panTro1.chr19_random 2814361 8 + 57627672 tgtatggc s mm5.chr11 83268846 8 + 121648857 GACATGGA s rn3.chr10 71777590 8 + 110733352 CACATGGT s canFam1.chr9 23368376 8 - 53642819 tatacagc a score=75279.0 s hg17.chr17_random 785135 200 + 2618010 aaaagggactttggagatatgatcaagttatggatcttgagatggagtgatta-ccttgaattatctggtcaggccctaaa-tgtagttgtgagtgtccttaccagaggaaggaag-agaaaaatttggtaat---agaggagaaggtagcaatgtgacagcagaagcaagatgctatgctaccagcttggaagatggaagaagag s panTro1.chr19_random 2814369 200 + 57627672 aaaagggactttggagatatgatcaagttatggatcttgagatggagtgatta-ccttgaattatctggtcaggccctaaa-tgtagttgtgagtgtccttatcagaggaaggaag-agaaaaatttggtaat---agaggagaaggtagcaatgtgacagcagaagcaagatgctatgccactagcttggaagatggaagaagag s mm5.chr11 83268854 196 + 121648857 AAACGGGACTTTGCAGATAGGATTAAATTAAGGCTCCTAGGATAAAGAGTTTA-CCTTGA-----CTACTCAGGCCCTGAA-TGTAGCCAT--GCATCCTGGTAAGGGGGGTGGGGCAGAAAGATATTGGAATGACAGGAAAGAATGCATCGATGCAACAACTGAAGGAA-ATGGCGTCCTGCTGCCACTGAGGATGGCAAGGGAG s rn3.chr10 71777925 191 + 110733352 AAATGGGACTTGGCAGATAGGATTAAATTAAGGGTCCTGGAATAAAGAGTTTATCCTTGA-----TTACTCAGGCCCTGAA-TGGAGCTGT--GCATCCTGA--AACGGAGGCAAA-AGAAAA---TTGGAATGACAGAAAAGAATGCAGCAATGTGATATCTGAAGAAA-ATGGCATGCTGCTGCCTCTGAGGATGGCAAGGGAG s canFam1.chr9 23368384 192 - 53642819 aaaaaggactttgcagatatgatcaagtaaaggatcttgaggtggagagattt-tcctggattatctggctggaccctaaagtgtagttataaatatccttataagaagagatag--agggagatttgattac---aga-gagaagaaggcaatatgacgacca-------atgctatgccatcgacttcgataatggaggaagag a score=3572.0 s hg17.chr17_random 785335 13 + 2618010 gccaggagtgaag s panTro1.chr19_random 2814569 13 + 57627672 gccaggagtgaag s mm5.chr11 83269050 13 + 121648857 CCCATGGGTCAAG s canFam1.chr9 23368576 13 - 53642819 tgcaggagccaag a score=-481.0 s hg17.chr17_random 785348 7 + 2618010 aggtttt- s panTro1.chr19_random 2814582 7 + 57627672 aggtttt- s canFam1.chr9 23368589 7 - 53642819 -gaatgcg a score=78387.0 s hg17.chr17_random 785355 294 + 2618010 aggatgcagctctagaagctgcaaatggcaaggaaattgttcctcccctagagcctccaaa--gggagtgtcccagtgaat----ctaatttca------------------gacttctcacctccagaacttttagagaataaata--tgtggtcataagacactaagtgtgtggtaattttttgcagcagcaa---taggaaacaaatacaACCACCAACTGATGTGTCACTGATAGTGACCCCCAATAGCTCAGTGTGGCAGGAAAGGGAGCATTCTAGAGGGTGAGCCAAATCTCCCTGCAGGAGGAACCCAGGGTGAG s panTro1.chr19_random 2814589 297 + 57627672 aggatgcagctctagaagctgcaagtggcaaggaaattgttcttcccctagagcctccaaa--gggagtgtcccagtgaat----ctaatttca------------------gacttctcacctccagaacttttacagaataaata--tgtggtcataagacactaagtgtgtggtaattttttgcagcagcaagggtaggaaacaaatacaACCACCAACTGATGTGTCACTGATAGTGACCCCCAATAGCTCAGTGTGGCAGGAAAGGGAGCATTCTAGAGGGTGAGCCAAATCTCCCTGCAGGAGGAACCCAGGGTGAG s mm5.chr11 83269373 282 + 121648857 AGAATTCAGCTCTCGAGGCTGGAAAGGGTAAGAAAATGGTTTCTCTCCTAAAG----------GAAAGCAGCCTGGTGAAA----CTAATTTTG------------------GACTTCTGACTCCCAGAAGTTTAAGGAACTCAGTGTCTTTTGTTTCAAAACATCAAGCTTACTATGATTTGTTATAGCAGTAA---TAGGAAACTGGTACAATTGATAGTTGAAGAGTCACTGACTGTGGTCTCTA-----CAGGTGCAGAAGAGAATGGAACATTCTAGAAAGTAAGTCAAACATCCCTA-AAGTTTACTCCAAAGTGAG s canFam1.chr9 23368596 311 - 53642819 agactgccattctagaagctggaaaaaacaatgaaatgtcttttctcctagagcctctagatggagtgcagccctgttgataaccctgatttcagcttagtgaaagagatttgatttctgaactccagaactttaagagaataaatgtgtgttgttttagggcaccaagtttgtattaatttgttatagaagaaa---tagaaaacaaatacaATCACCAACTGATTGGT---------TGGTCACCCCTTCCTCAGTGTGGAAGGAAATGGAACATTCTAGAAAGTGAGACAAACTTCCCTACAGGAGAAACCCAAGGTGAA a score=108519.0 s hg17.chr17_random 785649 353 + 2618010 AGGGACACACCTCAAGGAGATGAACTATAATGAGGAGAGGCATCCCAAGAGGA-GATCTGCT--------------TCAGCAACTGAGTTCTGGGGCTGAGGCTTGATCCAGGG-TCCAAGACCCT------------TAGGAAGCATGCCTCTTCTTGAGACATCT-------AGGGTGCTCTGAGGGGTCCTGGATTCCTATCTGGGAAAG----agtccatcctctcatctgtcagatgcagcccagagcagaaccatgacctgtctctggtt-cattgttagtgagcaggcagggttagggccagagtcccggtatcctccctcATGATGG--AGTCCCTT-----------TCCCAATCCTCCCTGCCCCTCAGCTAATGGAAAGGG--AGGAGCTCAGCTCC s panTro1.chr19_random 2814886 353 + 57627672 AGGGACACACCTCAAGGAGATGAACTATAATGAGGAGAGGCATTCCAAGAGGA-GATCTGCT--------------TCAGCAACTGAGTTCTGGGGCTGAGGCTTGATCCAGGG-TCCAAGACCCT------------TAGGAAGCATGCCTCTTCTTGAGACATCT-------AGGGTGCTCTGAGGGGTCCTGGATTCCTGTCTGGGAAAG----aatccatcctctcatctgtcagatgcagcccagagcagagccatgacctgtctctggtt-cattgttagtgagcaggcagggttagggccagaatcccagtatcctCCCTCATGATGG--AGTCGCTT-----------TCCCAATCCTCCCTACCCCTCAGCTAATGGAAAGGG--AGGAGCTCAGCTCC s mm5.chr11 83269655 329 + 121648857 TTGAATATACTTCAGAGAGGTGGACTC-----AGAGAGGGTATCTCAAGATAC-CCTCTGTT--------------TCAACAGTTGAACATGAGGGCT--GTCTTCCCCAAAGG------------------------CAGAAAGTACAGCTTTTCTTAAGATTCCT-------GCGGCA-TCTG-GGAGTCTTGAATTCTTAGGTGAAGAAGAATCAATCCATCATCTCATGTATCAGATGGGGCCTAGAGTAGA--CAGGGCCTGTTTGTGTCTGCATTGTTGCTGAGAGAGCAAGGTTAGGGCTGGAATCAGGATCTCCTCCTTCATAATTA--ATTC-CTG-----------TCCCATTACCACCCTGCCCTGGGCAAACTGGAGTAG--------TTAGTTCC s rn3.chr10 71778299 359 + 110733352 ATGAATATACTTCACAGAGGTGGACTC-----AGAGAGGGTATCCCAAGACAAGGCTCTGTT--------------TCAACAGTTGAAGATGAGGGCT--GTTTTCCCCCAAAGGTGCACGAGCCT------------CAGAAATTGCAGCTC----TAAGAATCCT-------GTGGCA-TCTG-GAAATCTTGAATTCTTAGGTGGAGAAGAATCGATCCATCATCTCATTTATCAGATGAGGCCTAGAGTAGA--TAGGGCCTGTTCGTGTCTGCATTGTTCTTGAGAGAGCAAGGTTAGGGCTGGAATTGGGATCTCCTCCTTCATAATTATTAGTT-CTTGTCCCATGGGGTCCCATTACAGCCCTGCCCTGGGTAAACTGGAGGTATACACAGTTCAGTTCC s canFam1.chr9 23368907 381 - 53642819 GTGGGCACATTCCAAGGGAATGGACTATAATGAAGTGAGGCATCTCAAGAGGAGGGTCTGCTCCTAAGCAGGAGGGTCTGCAGCTAAGTAC-AAAGCTGAGGCTTCACCAAGGG-TACAAACCCATGAGTCAAGCTAAGAGGAAGCCTGACTCTTCTTGGGGGCCTTTAAGGGGGTGGGG-GTCG-GTGATCTTGGATTCTTCTCAGAAGGAG------TCCATCCTCTCCTTTGTCTAATGAAGCGTGGAGGAGAGCCACAGCTTGTCTCTGGTTTCACCATTA--GAGAGGGCTGGGGTAGAGCTAGAATCTGGGTCTCCTTGCTCAC-ATGA--AGCC-CTT---------TGCCCCACATGTCCCTGGCTCTGAGCAAATTGGAAGGG--AGGAATTCAGCATC a score=8477.0 s hg17.chr17_random 786002 50 + 2618010 ACAGAGGCA-AGGCCACCAGGGAAGGCTGCAGGAGGCCAGGGCAGCCTCAT s panTro1.chr19 34989247 51 + 82489036 ACAGAGGCATAGGCCACCAGGGAAGGCTGCAGGAGACCAGGGCAGCCTCAT s mm5.chr11 83269984 21 + 121648857 ACAGAGGTG------------------------------GGACTGCTTCAC s rn3.chr10 71778658 21 + 110733352 ACAGAGGCG------------------------------GGACCGCTTCAC s canFam1.chr9 23369288 50 - 53642819 TCAGAGACC-AGAGTGCCAGGGAAGCCTGCAGGAGACCTGAATACCCTCGC a score=329.0 s hg17.chr17_random 786052 13 + 2618010 GAAGAAATGCTTA-- s canFam1.chr9 23369338 15 - 53642819 GAAGAAATCCTTCAG a score=1017.0 s hg17.chr17_random 786052 13 + 2618010 GAAGAAATG-CTTA-- s panTro1.chr19 34989298 14 + 82489036 GAAGAAATGGCTTA-- s canFam1.chr9 23369338 15 - 53642819 GAAGAAATC-CTTCAG a score=329.0 s hg17.chr17_random 786052 13 + 2618010 GAAGAAATGCTTA-- s canFam1.chr9 23369338 15 - 53642819 GAAGAAATCCTTCAG a score=70139.0 s hg17.chr17_random 786065 310 + 2618010 CCAGGAATTACAAACAGCAGAATGGAATCCTCGAAG--GGGCAATGTGGGACTTCACCTG-TTGCACAATATGAGACTGTTTTTTTC------CTTTCTCCTCTTTTCATACAACTTCCTTTTCTC-ACCCTGGGCCCAGAGAGCTGGAATCTGCTTACTTGACGTTCCAGTTGAGGTTTCTCCAGGTTTCCGGGTGGGGGCAAAAGCCAGAACAGACAAAGCAGGACACTCGAAAGGAACTATGGATTATGGAGCAACTTCTAGGCA---TCCGGCC---TATTTTCCTACTC-CTTGCAGTGCCCACCTCCCCCAGCTCACTCTC s panTro1.chr19_random 2815354 313 + 57627672 CCAGGAATTACAAACGGCAGAATGGAATCCTCGAAGTGGGGCAATGTGGGACTTCACCTGGTTGCACAATATGAGACTGTTTTTTTC------CTTTCTCCTCTTTTCATACAACTTCCTTTTCTC-ACCCTGGGCCCAGAGAGCTGGAATCTGCTTACTTGACGTTCCAGTTGAGGTTTCTCCAGGTTTCTGGGTGGGGGCAAAAGCCAGAACAGACAAAGCAGGACACTCAAAAGGAACTATGGATTATGGAGCAACTTCTAGGCA---TCCGGCC---TATTTTCCTAGTC-CTTGCAGTGCCCACCTCCCCCAGCTCACTCTC s mm5.chr11 83270005 275 + 121648857 CCAGGAACAACAAAGGACTTCATGGAGCCTT----------ACCTGTGAGAATCCAGCTG-TTGGAT------------CTCCCTTCAGGGATCTCCCTTCTCTTGGCATGTGACCTCTTTTAGTCTACTATG-----AGAAAACTT--ACCTACTTGCTTAGCTTTCCCCATGGATGTCCTCCAGGTTTCTGGTT--TTGCAGGAGGCAGATCAAGGGAAGT------TTC--------CTATGACTTTCAGAGTAACATCTGAGTG----CCAGCCA-GTACTGATCTCCTC-CCTTCAGAACCTTCCTCCCACATTCTCTTCTC s rn3.chr10 71778679 263 + 110733352 CCAGGAACAACAAAGGACTTCATGGAGCCTT----------CCCTGTGAGAATCCACCTC-TTACATCAGAAAA-------------------ATCTCAGGGATCTCCCT----CCTTTGTTAGTCTACTATG-----AGAAAGCTT--ATCTACTTGCTTAGCATTCCACATGGACTTTCTTCAGGCTTCTGGTT--TTGCAGGAGGCAGAGCAAGGGAAGT------TTC--------TTATGACTTCCAGAGCAACATCTGAGTG----CCAGCCA-GTACTGCTCTCCTC-CCTTCAGAGCCTTCCTCCCACATTCTCTTTC- s canFam1.chr9 23369353 307 - 53642819 TCAGGAATTCCCGACGACAGAGTGGAATCCTTGTGGTGGGGCAATGTGGAACTTCACCTG-TTGCACAACAAGACACTTGTTCTTCC------TTTTTCCTTTTCTTTATGAAACTTCCTTTTTT--AGATTGAGGCCAGGATGTTGGTATCTGATT--------TTCCACGTA---CTTCTCCAGGTTTCTGGGTGGAGACTAGAACCTGAACAGATGAAGCAGGATAGGAAATGAGAGCTACAGTTTGTGGAGCAACTTCTGGAAAAAACATAGCCCTGTGTTTTTCTATTCTCTTTCAATATTTGCATCCCCCATCTCCCTCCC a score=2867.0 s hg17.chr17_random 786375 23 + 2618010 CAGATGGGAG---------TCCA--TTTCCTTAT s panTro1.chr19_random 2815667 23 + 57627672 CATATGGGAG---------TCCA--TTTCCTTAT s rn3.chr10 71778947 25 + 110733352 AGCATAGGCG---------TTCAGGTATCCCTAT s canFam1.chr9 23369660 32 - 53642819 CAGTTGGGGGGAGAGGGGCTCTG--TTTCTTCAT a score=44140.0 s hg17.chr17_random 786398 272 + 2618010 GTACATGTTCC--TTTAGGACATGTTCATGCAAACATGTCTTTATCCCCCATCCCACCTCAACCTGGAACCCTCCATCATGCTCCCATTGACACAGGCATTTTCCTCCAAGGAGGCCAGGAGCCGAGCAAGCAGAGGCAGGGATCAAGGGAGCAAGATGAGCTGAGGATGGTGACAT-AGCCACAGTTCTTCCTGGAGGCTGAGACCAGAGACCAGCTGGCAGTCCTGTACTGCAGTCTGCATTCACCCTTTACAGATTTGAGGGCCTTAAAACC s panTro1.chr19_random 2815690 272 + 57627672 GTACATGTTCC--TTTAGGACATGTTCACGCAAACATGTCTTTATCCCCCATCCCACCTCAACCTGGAACCCTCCATCATGCTCCCATTGACACAGGCATTTTCCTCCAAGGAGGCCAGGAACCGAGCAAGCAGAGGCAGGGATCAAGGGAGCAAGATGAGCTGAGGATGGTGACAT-AGCCACAGTTCTTCCTGGAGGCTGAGACCAGAGACCAGCTGGCAGTCCTGTGCTGCAGTCTGCATTCACCCTTTATAGACTTGAGGGTCTTAGCGCC s canFam1.chr9 23369692 255 - 53642819 ------GTTCTGATTCATGAAATTCT-------ACAT---TCTCACCCCCATCTCACTCCAACCCAGAGCCTTCCACCATGTTCCCA-TGACATAGGCATTTTCCTCCTAGGAGACCAGGAGCTGACCCAGCAGAAACAGTGACCTAGGATATAAGTTGAGCCACAAATAGTGGAAGAAACCACAGTTTTTCCTGGCGGCTGAGCCCAGCGGCCACATGATTGTTCTGAGCTGCTTTCCACACACACCCTTCACAGACCTGAGGGACGTGTC--- a score=34324.0 s hg17.chr17_random 786670 154 + 2618010 CTCTCTTTCC---CACTTATCTCTACCTGTTCTCCCTTCTAAACTCCTTCTGTCTTGGGTTCCCAACTGAGTCTAGCATAC-----AGGAAAATAGAAGAAAA-----GAATTG-----------------------AGAGACAAAATTGTGGCTGCATTTTTCTACCTTTTAAATAGTTTCATTTTTAG s panTro1.chr19_random 2815962 153 + 57627672 CTCTCTTTCC---CACTTATCTCTACCTGTTCTCCCTTCTAAACTCCTTCTGTCTTGGGTTCCC-ACTGAGTCTAGCATAC-----AGGAAAATAGAAGAACA-----GAATTG-----------------------AGAGACAAAATCGTGGCTGCATTTTTCTACCTTTTAAATAGTTTCATTTTTAG s mm5.chr1 148380432 185 - 195203927 CTCTCTCCCCACTCATCTTTCTCTGCCTGTAGTCCCTTCTCAACTTCTCTTTCCATGACTCCCAAACAAACTCTATTCTATACTAAAAGAAAATAAAAGAAAA-----AAATAGGATATACTTTATTTTTCAAAAGTAAAAAAATAATTATGTTGATATTTTACTCTTTATAAAATTAAGACATTTTTAG s canFam1.chr9 23369947 150 - 53642819 CTCTCTCCCT---------TTTCCACCTGCCCCCCCATCTAAACACATCTCTTCTTGGGCTCCC-ATTGAGTCCAGCAGAC-----GGGAAAATGTTAAAAGATGTAGGAATTA-----------------------AGAGAAAAAATTGTGAATGCATTTTTCTACATTTTAAA--GTTTCATTTTTAG a score=91.0 s hg17.chr17_random 786824 1 + 2618010 A s canFam1.chr9 23370097 1 - 53642819 A a score=58015.0 s hg17.chr17_random 786824 623 + 2618010 ATAcagtcgacattttgaatatgtgggatccaaatctgtggattcaaccgatgatggatggaaaatatttggggaagaaaaaaacacaataggccaggtttagtggctcacacctgtaatcccagcactttgggaggctaaggtgggaggaatatttgagcttaggcattctagaccagcttgggcaacataacaagaccccttctctacaaaagtaccaaaattagctgggtgaggtggcacatgcttgtagtcccagctacttgggaggctgaggcaagaggatcgcttgagcccaggaggcggaagttacaaacagctgagatgacatgactgcactccagcctgggcgctagagcaatatgctgtctcaaaaactaaaaaagaaaaaagaaaaacaaataaaaaacaatgcagtataacaatgatctacatttacatttatgaatagcatttacattgtttaggtattctaagtaatctagagattaaagtatatgggaggatgttcataggttatgggcaaatactatgctacatcagagactagagcatgtgtagattttggaagccatgagaattcctagaaccaatcccctgtggataccaagggatggctCTAC s panTro1.chr19_random 2816115 622 + 57627672 ATAcagtcgacattttgaatatgtgggatccaaatctgtggattcaaccgatgatggatggaaaatatttggggaagaaaaaaacacaataggccaggtttagtggctcacacctgtaatcccagcactttgggaggctaaggtgggaggaatatttgagcttaggcattctagaccagcttgggcaacataacaagaccccttctctacaaaagtaccaaaattagctgggtgaggtggcacatgcttgtagtcccagctacttgggaggctgaggcaagaggatcgcttgagcccaggaggtggaagttacaaacagctgagatgacatgactgcactccagcctgggcgctagagcaatatgctgtctcaaaaactaaaaaagagaaaagaaaaacaaat-aaaagcaatgcagtataacaatgatctacatttacatttatgaatagcatttacattgtttaggtattctaagtaatctagagattaaagtatatgggaggatgttcataggttatgggcgaatactatgctacatcagagactagagcatgtgtagattttggaagccatgagaattcctagaaccaatcccctgtggataccaagggatggctCTAC a score=20292.0 s hg17.chr17_random 787447 120 + 2618010 ATGATAAGTGTGTAAAATATATATATTCAGAAGGAATGAGAAAATCAAAATTAATTTTTTTC----------AGGGAAGATGGGCTTGATGGGACTTGATGGAGGATGGTCTGGGAGACTCTCCCCTTCT s panTro1.chr19_random 2816737 120 + 57627672 ATGATAAGTGTGTAAAATATATATATTCAGAAGGAATGAGAAAATCAAAATTAATTTTTTTC----------AGGGAAGATGGGCTTGATGGGACTTGATGGAGGATGGTCTGGGAGACTCTCCCCTTCT s canFam1.chr9 23370100 123 - 53642819 ATGAAAATTGTATGAAATACAGACATTCAGAAGAAAAGAGAAAATCACCttttttttttttttttttttGCAGGGGAGGACAGGCTTGAT----CCCAAC--AGGATGGTCTGGG-GACTCCcttcttct a score=89621.0 s hg17.chr17_random 787567 1074 + 2618010 ATGGAAACATTCCCAACTGGGAGACCAGCACAGCTGCAGGGAAATAATTTCTTCAGGCAGTGTTAGCTGCTTCTAAATCTCAGGACCCTATGTCCCTGGGCTCCTCAAGGAGACATTTGTTATTTACAGTGACTCCTGATTCATTTGCTTAGGGGGTCCTCTTGTCTTTCTGCTAGGGACTtggaaaaggagagagggcctagcctcccagcctacatctttctcctctgctggttgtttccttgtgatcttgtaagttaacacttaataaatcccatatatatatGGGATTTATTAAGTGTTAACTTACACTtatatatatgtatatata--tgtgttatatatataatatgtgttatataatatatacatattaaatgttaacttacacatatatgatttatttgtatatttatattatatatttatatatatcctaatatgtgtgtatatatatatCtatatctatctatctatctatctatctatctatatatcctattagttctgtccctctaagaggaccctgactaaTCCAgattttggtaccaggagtggttctagagaaatggaatattaagagtggagttctttcattggttttgggttttctagagttggctgcttaatatggttagaccccaaaatgctaaggactctacgtctaatagtatggagaacactgatagtccttggtgtgaactgtttagagagttaagcaaagtaaatgcatttggcactcctgattcactgctcatgagaggcaaggagtttagtgactctatacataatacctttgaccatatgtggagaaccaaggaacataatgaagctggttggttgctcctgagttcaatagacaaagtgatgaaagaaaacgatgagctcagggattatgtctcctggcttcagaagcagatactgagcctcaaatctgctaagattgccctgagtgagacccttatcttctgtagagaaagagctgaaattgtgaaaaaacaaacacaaattcttatcatgcaagtggctgacctgcaacaaaaggtgcatgtacagactcactaggtgtctactgt s panTro1.chr19_random 2816857 1006 + 57627672 ATGGAAACATTCCCAACTGGGAGACCAGCACAGCTGCAGGGAAATAATTTCTTCAGGCAGTGTTAGCAGCTTCTAAATCTCAGGACCCTATGTCCCTGGGCTCCTCAAGGAGACATTTGTTATTTACAGTGACTCCTGATTCATTTGCTTAGGGGGTCCTCTTGTCTTTCTGCTAGGGACTTGGAaaaggagagagggcctagcctcccagcctacatctttctcctctgctggttgtttccttgtgatcttgtaagttaacacttaataaatcccatatatatatGGGATTTATTAAGTGTTAACTTACACTtatatatatgtatatatatgtgtgttatat-----atatgtgttatataatatatacatatTAAATGTTAACTTACACATATATGATttatttgtttatttatattata----------------------------------------------------------------tatatatatatcctattagttctgtccctctaagagaaccctgactaatccagattttggtaccaggagtggttctagagaaatggaatattaagggtggagttctttcattggttttgggttttctagagttggctgcttaatatggttagaccccaaaatgctaaggactctacgtctaatagtatggagaacactgatagtccttggtgtgaactgtttagagagttaagcaaagtaaatgcatttggcactcctgattcactgctcatgagaggcaaggagtttagtgactctatacataatacctttgaccatatgtggagaaccaaggaacataatgaagctggttggttgctcctgagttcaatagacaaagtgatgaaagaaaacgatgagctcagggattatgtctcctggcttcagaagctgatactgagcctcaaatctgctaagattgccctgagtgagacccttatctcctgtagagaaagagctgaaattgtgaaaaaacaaacacaaattcttatcatgcaagtggctgacctgcaacaaaaggtgcacgtacagactcac-aggtgtctaccgt a score=388006.0 s hg17.chr17_random 792919 4333 + 2618010 attactttaatgtaaatgagattataccatactctcttctctgtcacttcctattttcatgtaatttatgttagacatctgtcgatgtcagtataaatagatctagatcattttttatagttgtatagctttcattacttggatgtttcacaatttacttagctaactacctattgttggacatttggttatttccaaatttttgctatttcatataatgctgcGCTTATATAAAATATAGTTCTATATAATTATGTTTAATTATGTACTACCGCtgtatctgacaactgacttgtatcaagaacatacaaagaactgttacaaGTTgccaggcagagtggctcatgtctgcaatcccacggctttgggaggccaaggtgggcggatctcttgagcccaggagttggagaccagcctgggcaacatggggagaccccgtctcgacaaaaatacaaaaattagccaggcataggggcacacatctgtagttccagctacttagaggctgaggtgggaagactgcttgagcccaggaagttgaggctgcagtgagccaagatcacaccacggcactccagccagcgcgtcaaaggccctgtctgaaaaaaaaggaagaaGCGGGGGCGGCAAATAAGTAGAGTATACGCCACCTCATCCAACCTTACTGGAACCAGTAGTTGACTGGTTAATCAGTCCAACCAAGGAAGCATTAAAAACTGATGCATGTgccgggcatggtggctcacgcccgcaatccccgcactttgtgagaccgaggcgggctgatcacctgaggttaggagtttgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaagttagccatgcatggtagtacacgtctgtaatcacagctactcaggaggctgaggcaaaaaaaggagaagaaatgctatgtgaagcctttttataagcacattaatttcattcacgagggcagagcactcatgacctaatcaccaccttgaaagcctcacttcttaacatcatcacattaggtcttaggttataacatgaattttggaggACTCCAGAAAaaaaaagtgaaagacaacccacagaatgggagaaaatacttgcaaattatataCAAAGTAGGCTCACTTTATTTGTGGAAAatatgtagccagacgcagtggctcatgcctgtaatcccagaactttggaaagctgaggtgggaggatcacttgagcccaggagctcaagactaaccggggcaacatagggataccctatctctacaataaataaataaaattacccagatgtggtgacatgtgcctgtggtcccagctacttgggaggttgaggtgggagaatcacgtgagcccaggaggttgaggctgcagtgagccaagataacattaatgtatcccagcctgggcgatagaccgagaccttatctcaaaaaaaaaa------tatatatatatgtatatatttatttatctacctat----atattcatatatagatatagattaatatagatatataaacatatatttatagatatatagatacataaatatatagctatataaatatatatttataaatatatagatatatatgtaACAAAatatgttccaagacctccagtgtatacctgaaactgcagatagtaccaaactctatatgtactatgtttttttcctatacatacatacatacctatgatgaagtttaatttataaattaggcactgtaatagaataacaacaataactaataataaaagagaacaattagaatatactttttgtttttgagatggagtcttgctctgtcacccaggctggagtgccatggcgccatctcggctcactgcaacttccacctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggcctacaggcacctgccaccacgcccggctaatttttgtatctttagtagaggcagggtttcaccatattggccaggctggtctccaattcctgaccttgtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgtgcccggctagaatatactttaacataagttacatgaatagttttctctctctcaaaatactgtaatatttggg-attgcagctgcccgcaggtaactgaaactgcagagagCATACGGGAGACTACAGtatctgacaatggacttggatctagaatacataaagaactcttacaacttgataataaaaaggatataacccaattttaaaatggacaaaagatctgaacagatatttctccaaagaagacatacaaatggccaataagggccaggtg--gtggcttatgcctataatcccaacactttgggaggccaaggcaggtggatcacttgaggccaggagttcaagaccagtctggccaacatggcgaaaacccatctctactaaaaatataaaaatcagccaggcgttgtggcgcatgcctgtagtcccaggtactcaggcagatgaggcacaagaatcactcgaacccgggaggcagaggttgcaatgagctaagattgcaccactgcactccagcctgggcaacagagcaaaaccccacctaaaaataaataaataaataaaaataaaagaaagaaaataaatggccaataagcacaagaaaatacactcaatttctgtcttagtctgtttgtgctgctataacaaaatacctgagactaagtaatttataagtaaaaaaatttattcctcacagttccggaggctgggaaatccaaaatcaaggtggtagcacatttggcatttggtgagggcctgttccattgttcccgttctcgcagtggcatcttcacatggcaggagaagaaaggaaaaaagaagaagaaatgttatgtgaagcctttttataaggggattaatttcattcacgagggcagagccctcatgacctaatcaccaccttgaaggcctcacttcttaacatcgtcacattaggtcttaggttataacatgaattttggaggactccaacattcaaaccatagaaacatcattagccatcagggaagtgcaaatccaaaccatgttaagataccacttcacactcacaagaatggctataataaacagacacataataacaagtgttggagaaaatgtggaaaaattgaaacactcatatgttgctggagggaatgtaaaatgctttgcaatgaagttggaactgctttggaaatagtctggca-gttcctccaaagcttaaacatagagttatcatatgacctgg-caatgccaggcttcatcgtattcccaaggggaaggaaaacatatgtccacacaaaaacttatacatgaatgttcatagcagcattattcataatagtcaaaaagtagagacagctgggtgtggtggctcccaacactttgggaggccaaggcgggaggattgcttgagctcaggagctcgagaccagcctggccaacagagtgaaatccgatctctactgaaaatacaaaaatcagcgggacatggtatacgtgcctgtaatcccagctacttgggaggctgaggcaggtgaatggcttgaatccaggaggcggaggccgcagtgagccaagatcacaccaccgtactccagcctgagtgacagactgagactccatctcaaaaaaaaaaaaaaaagtgataaacagataaatgaaatgtgttatattcctacaacagaatattactgagccataaaaaaaaggaaataagtactgacacatgctataacatgaatga-accttgaaaacatt-aggttacttgaaaaaagccagtcacaaaagatcacaaattgtatggttccatttatatgaaatgtccaaataggcaaatcctatcctaaaagaaagtaaattagtggttgcctaggactgagggatggaggaaatggggagtgactgctcataggtatggtatttttttttgagagaaatgaaaatattctaaaattgattgtggtggccaggcacaggggctcacgcctgtaatcccagcactttgagaggccgaggcgggcggatcacctgaggtcgggagttcgagactagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggtgcatacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccagggaggtggaagttgcagtgagctgagatcgtgccactgcactccagtctggcgagagagtgaggctccatctcataaaaaaaaaaaaaaaagaaagaaagaaa s panTro1.chr19 35001877 4336 - 82489036 ATTACTTTAACGcaaatgagattataccatactctcttctctgtcacttcctattttcatgtaatttatgttagacatctgtcgatgtcagtataaatacatctagatcattttttatagttgtatacctttcattacatggatgtttcacaatttactttgctaactacctattgttggacatttggttatttccaaatttttgctattttatataatgctgcACTTGtataaaatatagttttatataattatgtttaattatGTACTACTACtgtatctgacaactgacttgtatcaagaacatacaaagaattgttacaaGTTgccaggcagagtggctcatgtctgcaatcccagggctttgggaggccaaggtgggcggatctcttgagcccaggagttggagatcagcctgggcaacatgggcagaccccgtctcaacaaaaatacaaaaattagccaggcataggggcacacatctgtagttccagctacttagaggctgaggtgggaagactgcttgagcccaggaagttgaggctgcagtgagccaagatcacaccacggcactccagccagcatgtcaaaggccctgtctcaaaaaaa-ggaagaaGCGGGGGAGGCAAATAAGTAGAGTATAAGCCACCTCATCCAACCTTATTGGAACCAGTAGTTGACTGGTTAATCAATCCAAGCAAGGAAGCAT-AAAAACTGATGCATGTgccgggcatggtggctcacgcctgcaatccccgcactttgtgagaccgaggcgggccgatcacctgaggttaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaagttagccatgcatggtagtacacgtctgtaatcccagctactcaggaggctgaggcaaaaaaaGAAGAAGAAATgctatgtgaagcctttttataagcgcattaatttcattcacgagggcagagccctcatgacctaatcaccaccttgaaagcctcacttcttaacatcatcacattaggtcttaggttataacatgaattttggaggactcaaGAAAaaaaaagtgaaagacaacccacagaatgggagaaaatacttgcaaattatataCAAAGTAGGCCCACTTTATTTGTGGAAAatatgtagccagacacagtggctcatgcctgtaatcccagaactttggaaagctgaggtgggaggatcacttgagcccaggagctcaagactaacctgggcaacatagggataccctatctctacaataaataaataaaattacccagatgtggtgatatgtgcctgtggtcccagctacttgggaggttgaggtgggagaatcacgtgagcccaggaggttgaggctgcagtgagccaagataacattaatgtaccccagcctgggcgatagactgagaccttatctcaaaaaaaaaaaaaaaatatatatatatatatatatttatctatctatctatctatatattcatatacagatatagattaatatagatatataaacatat--ttatagatatatagatacataaatatatagctatata--tatatatttataaatatatagatatatatgtaACAAAatatgttccaagacctccagtgtatacctgaaactgcagatagtaccaaactctatacgtactatgtttttttcctatacatacatacatacctatgatgaagtttaatttataaattaggcactgtaatagaataacaacaataactaataataaaagagaacaattagaatatacgttttgtttttgagatggagtcttgctctgttgcccaggctggagtgccatggcgccatctcggctcactgctacttccgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggcctacaggcgcctgccaccacgcccggttaatttttgtatctttagtagagacagggtttcaccatattggccaggctggtctccaattcctgaccttgtgatccacccacctcggcctcccaaagtgctgggattacaggtgtgagccactgttcccggctagaatatactttaatataagttacatgaatagttttctctctctcaaaatactgtaatatttggggattgcagctgcccacaggtaactgaaactgcagaaagCATACGGG-GACTACAGtatctgacaatggacttggatctagaatacataaagaactcttacaacttgataataaaaaggatataacccaattttaaaatggacaaaagatctgaacagatatttctccaaagaagatatacaaatggcctataagggccaggtgctgtggcttatgcctataatcccaacactttgggaggccaaggcaggtggatcacttgaggccaggagttcaagaccagtctggccaacatggcgaaaacccatctctactaaaaatataaaaatcagccaggcgttgtggcgcacgcctgtagtcccaggtactcaggcagatgaggcacaagaatcactcgaacccgggaggcagaggttgcaatgagctaagattgcaccactgcactccagcctgggcaacagagcaaaaccccacctaaaaataaataaataaataaaaataaaagaaagaaaataaatggccaataagcacaagaaaatacactcaatttctgtcttagtctgtttgtgctgctataacaaaatacctgagactgagtaatttataagcaaaaaaatttattcctcacagttccggaggctgggaaatccaaaatcaaggtgatagcacatttggcatttggtgagggcctgttccattgttcccgttcttgcagtggcatcttcacatggcaggagaagaaaggaaaaaagaagaagaaatgttatgtgaagactttttataagggcattaatttcattcacgagggcagaacactcatgacctaatcaccaccttgaaggcctcacttcttaacatcgtcacattaggtcttaggttataacatgaattttggaggacacaaacattcaaaccatagaaacatcattagccatcagggaagtgcaaatccaaaccatgttaagataccacttcacactcacaagaatggctataataaacagacagataataacaagtgttggagaaaatgtggaaaaactgaaacactcatatgttgctggagggaatgtaaaatgctttgcaatgaagttggaactgctttggaaatagtctggcaagttcctccaaagcttaaacatagagttatcatatgacctgggcaatgccaggcttcatcatattcccaagggaaatgaaaacatatgtccacacaaaaacttatacatgaatgttcatagcagcattattcataatagtcaaaaagtggagacagctgggtgtggtggctcccaacactttgggaggccaaggcgggaggatcacttgaggtcaggagttcgagaccagcctggccaacatagtgacatccgatctctactgaaaatacaaaaatcagcgggacatggtatatgtgcctgtaatcccagctacttgggaggctgaggcaggtgaatggcttgaatccaggaggcggaggctgcagtgagccaagatcacaccactgtactccagcctgagtgacagactgagactccatctcaaaaaaaaaaaaaa--gtgataaacagataaatgaaatgtgttatattcctacaacggaatattattgagccataaaaaaaaggaaataagtactgacacatgctataacatgaatgataccttgaaaacatttaggttacttgaaaaaagccagtcacaaaagatcacaaattgtatggttccatttatatgaaatgtccaaataggcaaatcctatcctaaaagaaagtaaattagtggttgcctaggactgagggatggaggaaatggggagtgactgctcataggtatggtatttttttttgggagaaatgaaaatattctaaaattgattgtggtggccaggcacaggggctcacgcctgtaatcccagcactttgagaggccgaggcgggcggatcacctgaggtcgggagttcgagactagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggtgcatacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaaccagggaggtggaggttgcagtgagctgagattgtgccactgcactccagtctggcgagagagtgagactccatctcattaaaaaaaaaaagaaa-----aaagaaa a score=45211.0 s hg17.chr17_random 797252 274 + 2618010 -AAAGAAAAAA--AAGAATGTTTCAGGCAAAGGGAAGAG-AAGTGCAATGGTGCTATTTCAGGCAGAAGCTTGTCAGGTTTGCTGTG----GTGTGG-TAGTGTGGAAGGACTCAGTGGGAAGGAAAAGAAATGAGGGCACAGTAGTGGGCAGGGCCAAGATAAA-----GCCATATGCATACTGCTACATTTTTTCCTTGTCCAATATATTTCATTAAATGTAGACAAAACTTATTATAAAGACATAACTTTTGATGTTTGTAAGGTCATCTGTTATTTGCACTCCt s panTro1.chr19 35006213 280 - 82489036 -aaagaaaaaa--aagaatgtttcaggcaaagggaagag-aagtgcaatggtgctatttcaggcagaagcttgtcaggtttgctgtg----gtgtggctaatgtggaaggactcagtgggaaggaaaagagatgagggcacagtagtgggcagggccaagataaaataaagccatgtgcacactgtTACATTTTTTCCTTGTCCAATATATTTCATTAAATGTAGACAAAACTTATTATAAAGACATAACTTTTGATGTTTGTAAGGTCATCTGTTATTTGCACTCCt s canFam1.chr9 26569446 279 - 53642819 AAAGGAAAGAAATaaaaatattccaagtagagggaagagaaagcgcaatggtgctgttccaggcagacatctggcatgtttggaaggatcagtgtgaccagcacagaatgatttaatgggagtaataagaaatga-agcagagtggtgggcagggccaaattata-aagaatcACATGCATGCTATTAAATTT-----TTGTCTGATATATTTCACTAAATACAGACAAAATATA-AACAGAAACACAACTTTTAGTATTTATAATATAATCTAGTA-TTGCATCCCT a score=28896.0 s hg17.chr17_random 797526 312 + 2618010 ttttttttttt------------gagatagggtctcactctgtcacccaggctggagtgcagtgttgccaccacagctcacagcagcctcgacctcctgggctcaagcactcctcccaccttagcctcctgagtatctgggactacaggcacatgccaccgtgccccactaattttttattttttgtaaagacagggtttctccatgttacccaggctggtctcaaactcttgagctcaaacaatctacccaccttggtctcccaaagagctaagattacaggcgtgagccactgtgcctggctTGTTATTTGCATTTGTGATT s panTro1.chr19 35006493 324 - 82489036 tttttttttttttttttttttttgagatagggtctcactctgtcacccaggctggagtgcagtgttgccaccacagctcacagcagcctcgacctcctgggctcaagcactcctcccaccttagcctcctgagtatctgggactacaggcacatgccaccgtgccccactaattttttattttttgtaaagacagggtttctccatgttacccaggctggtctcaaactcttgagctcaaacaatctacccaccttggtctcccaaagagctaagattacaggcgtgagccactgtgcctggctTGTTATTTGCATCTGTGATT a score=4898.0 s hg17.chr17_random 797838 21 + 2618010 TTAAAATTCCATGTTTTTTAT s panTro1.chr19 35006817 21 - 82489036 TTAAAATTCCATGTTTTTTAT s canFam1.chr9 26569867 21 - 53642819 taaaAATTCCATGCTTTCTAT a score=25124.0 s hg17.chr17_random 797859 93 + 2618010 CATAAGATTGT-CAGGTGCTTTC-TGGACAGGAAATGCCTTAATTTATGACTCA--AAATACAAACAAGTGTAGGTGATCAAATGCATATCTATGTC s panTro1.chr19 35006838 93 - 82489036 CATAAGATTGT-CAGGTGCTTTC-TGGACAGGAAATGCCTTAATTTGTGACTCA--AAATACAAACAAATGTAGGTGATCAAATGCATATCTATGTC s rn3.chr10 74715177 96 + 110733352 TGTAAGACTGTCCAGATACTTTC-AGGATAGAAAAAGACTTAATTTCTGACTCATGAAATGTAAATTCGGTCACACAGCCAAAAGAGTTTCTGTGTT s canFam1.chr9 26569888 95 - 53642819 TATACCAGTGC-CAAGTACTTTCAAGGACAGGAAAAGGCTTAATTTATGATTCATAAAATACAAATAAAT-CAGGTGACCAAATGTATAACCATGCC a score=0.0 s hg17.chr17_random 797952 10 + 2618010 TTCAATGGAA a score=241.0 s hg17.chr17_random 797952 10 + 2618010 TTCAATGGAA s panTro1.chr19 35006931 10 - 82489036 TTCAATGGAA s rn3.chr10 74715273 9 + 110733352 TAAACTGAA- a score=8849.0 s hg17.chr17_random 797962 38 + 2618010 ATATATATACATACAAGTCATTAACGAAGACAAATGAG s panTro1.chr19_random 2817963 38 + 57627672 atatacatacatataAGTCATTAACGAAGACAAATGAG s rn3.chr10 74715282 37 + 110733352 ACTTTTATATGTGTAAA-CACCAGCAAGGATAAATGGG s canFam1.chr9 26569983 37 - 53642819 ATATATACATATCTATGTCATTAAC-AAGAAAAATCAG a score=25887.0 s hg17.chr17_random 798000 105 + 2618010 AACATGAAATTCATGACCTATTTTCCTTTCCATCACCTAGCCCCCTAAAGGAGAGATCTTTTTCATTCAGAGCCCTGGGTTTTGTTTT-GTTTCATGATTTGCTTt s panTro1.chr19 35006979 105 - 82489036 AACATGAAATTCATGATATATTTTCTTTTCCATCACCTAGCCCCCTAAAGGAGAGATCTTTTTCATTCAGAGCCCTGGGTTTTGTTTT-GTTTCATGATTTGCTTt s rn3.chr10 74715319 99 + 110733352 GACTGGAGGTTCATAATGTACTACTGCTTCTGTAACTGGGCCCCCAAAGAAAGGCA----CTGCATCCAGTG--CTGGCGTCTGTTCA-GTTTCCTAAGTTACTTT s canFam1.chr9 26570020 106 - 53642819 AAAATAAGATTCATGATACACTTTCTTCCTCAGCATCTAGCCCCTTAAAGGAGAGATCTTGTTCCTTGAGAGCCCTGGGTTTTGTTTTCATTTTTTACTTTGTTTT a score=18830.0 s hg17.chr17_random 798105 201 + 2618010 ttttttttttaaataagagtttatttatttatttatttgagacaaggtttcactcccatcagccaggctggagtgcaatggcgtgatctcagttcactgcaacttctgcctcctggactcaagtgactctcttgcctcagcctcctgagtagctgggactacaggcacgtgccgctgcatccagctaattttttgtagaga s panTro1.chr19 35007084 201 - 82489036 ttttttttttaaataagagtttatttatttatttatttgagacaaggtttcactcccatcagccaggctggagtgcaatggcgtgatctcagttcactgcaacttctgcctcctggactcaagtgattctcttgcctcagcctcctgagtagctgggactacaggcacgtgccactgcatccagctaattttttgtagaga a score=7323.0 s hg17.chr17_random 798332 79 + 2618010 ggtcttgaactcctgagttcaagcgatccgtctgcctctgagtctcaaagtgctagggttacaggaatgagccgccgcg s panTro1.chr19 35007301 79 - 82489036 agtcttgaactcctgagttcaagcgatccgtctgcctctgagtctcaaagtgctagggttacaggaatgagccaccgcg a score=6384.0 s hg17.chr17_random 798411 54 + 2618010 TGGCCAAAAGAGTTTATTTTTTAAAGAAAATTGACTTCTTTGAAAACGTAGAAA s panTro1.chr19 35007380 54 - 82489036 TGACCAAAAGAGTTTATTTTTTAAAGAAAATTGACTTCTTTGAAAACGTAGAAA s canFam1.chr9 26570126 52 - 53642819 GTTTTAAGTGATTTTAATATATAAGGAAAG--AAATCATTTCCAAAAGTAGAAA a score=28857.0 s hg17.chr17_random 798465 309 + 2618010 TGAggccgggcgcagtggctcacacctgtaattccagcactttgtgaggccgaggcaggtagatcgcttgaactgaagagtttgagaccaatctggccaacatggtgaaaccccatctctactaaaaatacaaacattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccaagattgcgccattgcactccagcctgggcaacaagagcaaaactccatctcaaaaagaaaagaaaaagtagaaa s panTro1.chr19 35007434 309 - 82489036 TGAggccgggtgcagtggctcacacctgtaattccagcactttgtgaggccgaggcaggtagatcgcttgaactgaagagtttgagaccaatctggccaacatggtgaaaccccgtccctactaaaaatacaaacattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggcaggcgaatcgcttgaacccgggaggcggaggttgcagtgagccaagattgcgccattgcactccagcctgggcaacaagaacaaaactccatctcaaaaagaaaagaaaaaGTAGAAA a score=2497.0 s hg17.chr17_random 798774 14 + 2618010 TGAGGAAGCGGCCA s panTro1.chr19 35007743 14 - 82489036 TGAGGAAGCGGCCA s canFam1.chr9 26570178 14 - 53642819 TGTGGAACTGGCAA a score=16888.0 s hg17.chr17_random 798788 94 + 2618010 GCCTGTG-TGGGGATCTAATCAAACAAATCTTCCCCTGATGAGGGTAGCACTTAAGTTGAAAAAAATTTGCCTATATAATAAATATTGCAATACt s panTro1.chr19_random 5520286 94 + 57627672 GCCTGTG-TGGGGATCTAATCAAACAAATCTTCCCTTGATGAGGGTAGTGCTTAAGTTGAAAAAAATTTGCCtatataataaatattgcaatagt s canFam1.chr9 26570192 94 - 53642819 -GTTGTATTGGGTGCCTAATAAAGCAAATATTTCTATGACAATGGTAGTACTTAAGTTGAAGAAATTTTGCTTATAAAACAAATATTGCCATATA a score=1654.0 s hg17.chr17_random 798882 36 + 2618010 ttatttatttatttatttatttttcgagatgagggt s panTro1.chr19_random 5520380 30 + 57627672 ttattttattatt------ttttttGAGATGAGGGT a score=19588.0 s hg17.chr17_random 799069 260 + 2618010 gcccaggctggagtgcag--tggcgcgatctccgctcactgcaagctccgcctcccgcgttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccactgcgccca-ctaattttttgtatttttagtaga-gacggggtttcaccgtgttaaccaggatggtctcgctctgctgacctcgtgatccgcccgcctcgacctcccaaggtgctgggattacaggcgtgagccaccgcgcccggccC s panTro1.chr19_random 5520529 264 + 57627672 gcccaggctggagtgcagagtggcgcgatctcggctcactgcaagctgcgccccccgggttcacgccgttctcctgcctcagcctcccgagtagctgggacaacagatgcacgccaccacgcccggctaattttttgtatttttagtagaagacagggtttcactgtgttacccaggatggtctcgatctcctggcctcgtgatccgcctgcctcagcctcccaaagtgctgggattacaggcttcagccactgcgcccggccC a score=1172.0 s hg17.chr17_random 799329 18 + 2618010 ATACTGATTTTGAAATTT---- s panTro1.chr19_random 5520793 18 + 57627672 ATACTGATTTTTAAATTA---- s canFam1.chr9 26570287 22 - 53642819 AGACTGACTTTGGAGCAGGGAG a score=40785.0 s hg17.chr17_random 799347 187 + 2618010 AAAAAATCTACATTCTAT---ATTCGCATCATAGCTTCTCCCTAATAAAATCTTTGTGAGTGTTTATGGGACTTATTCCCCGAAAAATCTGCAAGCAGCCTGGTAGCTTTATATACACAGGAAAGCCAAAGGACAAACTAGGAATTACGTCAGAGATGGG-GAAAGAC---------------TAAGGATCTTACCCAAATCAGTT s panTro1.chr19_random 5520811 186 + 57627672 AAAAAA-CTACATTCTAT---ATTCCCATCATAGCTTCTCCCTAATAAAATCTTTATGAGTGTTTATGGGACTCCTTCCCTGGAAAATCTGCAAGCAGCCTGGTAGCTTTATATACATAGGAAAGCCAAAAGACAAACTAGGAATTACGTCAGAGATGGG-GAAAGAC---------------TAAGGATCTTACCCAAATCAGTT s rn3.chr10 74718845 172 + 110733352 AAGTGATGTGTCTTCTATAAAAGTCTCATCACGGCCT------------GTCTTTGCGAGCGTTTACAGGCTT------CTAGCAAATCCACAGGTAACGAGGTAGCTTCATATTTGCCTGAGAATCAAGGAATAGGTTAGCCA-TGTGCCAGAGGTAAGCAAAAGAC---------------TGCAGATCCCAGAGAAAGCAGTT s canFam1.chr9 26570309 199 - 53642819 GAAATATCTACATTCTAT---ATTCTCATAATA-CTCCTCTCTAATAAAATCTTTGTGGATGTTTATAAGCCT-TCTCTCTGAAAATTCTACAGGCAGCCTGCAAACTTTATATTTATATGAAAGCTAAAGGACAAGCTAAGAA-TATATCAGAGATGGT-GAAAAGCACAATTAACACTTTGTGAGGTGCCTGCCTGACTCAGTT a score=1816.0 s hg17.chr17_random 799534 9 + 2618010 GAGAATCAG s panTro1.chr19_random 5520997 9 + 57627672 GAAAATCAG s rn3.chr10 74719017 9 + 110733352 TGGGGTCAG s canFam1.chr9 26571617 9 - 53642819 GAGAGTGAA a score=1836.0 s hg17.chr17_random 799543 13 + 2618010 CCTTAAGTATAAA s panTro1.chr19_random 5521006 13 + 57627672 CTTTAAGTATAAA s canFam1.chr9 26571626 13 - 53642819 GCTGAATTATAAG a score=27236.0 s hg17.chr17_random 799556 310 + 2618010 TGggccaggtgttggtggctcacacctgtaatcctagcactttgggaggccaaggcgggcagatcacttgaggtcaggagttcgagaccaccctggccaacatggtgaaaccccgtctctactaaaaataccaaaattagccaggcgtggtggcacgtgcctgtggtcccagctacttgggaggctgaggcaggagaatcgcttgaacctgggaggcagaggttgcagtgagctgagatcacgccactgcactccagcctgggtgacagagtaagactccgtctcaaaaaaaaaaaaaaaaaaaaGTATA s panTro1.chr19_random 5521019 310 + 57627672 TGggccaggtattggtggctcacaccggtaatcctagcactttgggaggccaaggcgggcagatcccttgaggtcaggagttcgagaccactctggccaacatggagaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggcgtgtgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaaccccggaggcagaggttgcagtgagccgagatcacgccactgcactccagcctgggcgacagagcgagactccatctcaaaaaaaaaaaaaaaaaaaaGTATA a score=273.0 s hg17.chr17_random 799866 1 + 2618010 A s panTro1.chr19_random 5521329 1 + 57627672 A s rn3.chr10 74719026 1 + 110733352 A a score=-1143.0 s hg17.chr17_random 799867 58 + 2618010 ATGAAGCACAATTAA-----------------------------------------------------------------------------CATTTTTTA--------------------------------------------ATTTTATAGAGCAAAAGTTCATAAAAATAAATAT s panTro1.chr19_random 5521330 58 + 57627672 ATGAAGTACAATTAA-----------------------------------------------------------------------------CATTTTATA--------------------------------------------ATTTTATAGAGCAAAAGTTCATAAAAATAAATAT s rn3.chr10 74719027 42 + 110733352 GTTGACCACATATCA-----------------------------------------------------------------------------CATCGT------------------------------------------------------------AAACGTCATAAAAGTAAGCAT s canFam1.chr9 26571931 179 - 53642819 gTGAAGCTGAATTAAATCAACATAATTACTCTTTGTAAATAGCAAAACAGAGTTTCTTTGTTTTCTAAATAAAATACATATGGTGCTGTACTTATTTTTTATTATTATTTTCATGTGGTGTTGTTTTTAAAAAAAAACAACTAACATTTTGTGGAGCAAATATTCATAAAAAGACATAT a score=2151.0 s hg17.chr17_random 799925 15 + 2618010 TCTAATTAA----CTCTCC s panTro1.chr19_random 5521388 19 + 57627672 TCTAATTAAGTCTTTCTCC s canFam1.chr9 26572110 15 - 53642819 TCTAACTAA----TTTTTC a score=4647.0 s hg17.chr17_random 799940 19 + 2618010 --TACATCTTATAAACACTAT s panTro1.chr19_random 5521407 19 + 57627672 --TACATCCTATAAACACTAT s rn3.chr10 74719141 19 + 110733352 --TGCCGCTCATAAATGTTAT s canFam1.chr9 26572125 21 - 53642819 TACACATCTTATAAATAAGTT a score=6004.0 s hg17.chr17_random 799959 42 + 2618010 TACCAAACCCATTTAAGATTGAAGATAAATTATATCATGGCA s panTro1.chr19_random 5521426 42 + 57627672 TGCCGAACCCATTTAAGATTGTAGATAAATTATATCATGCCA s rn3.chr10 74719160 41 + 110733352 TAACAAACTCATTCGCGATT-TAAATATATTATTCCAGGCCA a score=31445.0 s hg17.chr17_random 800001 188 + 2618010 TGGGTAAAGATTTTCAATAAGGAGTTGCTAGGATAAAAGTCAAAATTCTCCAGCATAAATTCACTGAC-AGGGATTTCTGTTTAATCTTTT---CAAAATTCTAATACCCAATTTGTTTCCTCTAGAGAATAACTCGTGTAGAATCATAACCTCTTTGGTGGACCTTGATTTTTCCATCTGTAAA--AGTATAG s panTro1.chr19_random 5521468 188 + 57627672 TGGGTAAAGATTTTCAATAAGGAGTTGCTGGGGTAAGAGTCAAAATTATCCAGCATAAATTCACTGAC-AGGGATTTCTGTTCAATCTTTT---AAAAATTCTAATACCCAATTTATTTCCTCTAGAGAATAACTCATGTAGAATCATAACCTCTTTGGTGGACCTTGATTTTTCCATCTGTAAA--AGTATAG s rn3.chr10 74719201 161 + 110733352 ACAGT----ATTTCGAATACAGATTTGCCAGAACAC-AGTC-AAATTCTCCAGCATTAA-------GC-AGGGA---CTGCACAGACTCTT---GTGGAGTCCGAGAGCCCAGCTGACT-CTCTA-AGAACGGAGAATGTCGACTCACGAACCTT----TGAAACCTGG-----CTGTCCATAGA--AGTTCAG s canFam1.chr9 26572390 181 - 53642819 TGGGTAAAAATTT----TAAAGAGTTGCCATGATGAAAGTC--AAGTCTCCAGCATAAATTTACTGACAAGAGAGTGTTGTACAATCTTTCAAAAAAAATACTAATACTCTATATA----CTCTAAAGAATAGGGCATATAAAGTCACAATATCTT---TGGGCTTTAATTCTTCCATCTGTAGATCTGTATAG a score=25660.0 s hg17.chr17_random 800189 184 + 2618010 AACTAGTTTTGA-CTTAACA--------------GTCAACAAATGCCTA--CCCTCTCC----ATATCTAGCTGATTAGAGCGCCCTC--GTGCGCATTTGCTGTAATGTTTTAGAAATCTGAAAAAGACAATATTAATCTCAGCAGTAATACAATAAATAATGTCTTCATTTGCACATTTATAGCAAATGCTA-TAAAT--------ATATAGCT s panTro1.chr19_random 5521986 166 + 57627672 AACTAGTTTTGAATTTAACA--------------GTCAACAAATGCCTA--CCCTCTCC----ATATCTGTCTGATTAGAGCGCCCTCATGTGTGCATTTGTTGTAATGTTTTAGAAATCTGAAAAA----ATATTAATCTCAGCAGTAATACAATAAACAATGTCTTCATTTGCACATTTATG--------------------------ATAGCT s rn3.chr10 74719362 171 + 110733352 -----CTTTTGA-CTTCTCA---------------CAAACAGCTCCGGG--CTCTCACATGTGGTTTCTGGCAGATTATGGCGCCCCCGTGTGTGCCTTTGTTGTAACATTTTA---------------------CTATCTCAGGAGCAGTGCTGTCGGGAGT-TCTCTGTTTTCCGATTTGTAACTATTTCAAGTAAACACTAAAGAATGTGACT s canFam1.chr9 26572571 179 - 53642819 TATTGGTTTTGA-CTTACTAAAAATCTAAGTCCTAGCAAGAAGTGCTTATGCACTTCCA----GTGTCTGACTGATTAGAGCGCCCTCATGTGTGTCTTTGTTGTAATGTTTTAAATACCTGAAAA-----GTGTTAATCTCAGCAGCAATACAATT-ATAATACTTCTATTTTCCCATTTATA--------------------------ATGGTT a score=24026.0 s hg17.chr17_random 800373 158 + 2618010 CCAAGTATTACTCAGTAAAAGCTAAAGGCAAATGCTGTAGTAGG-TTAATCTTACTGTCGTTCACTATCAAACCTTTCTTATGCC-AATTTTATCCTAAAACAGTGAAGTTATTGTTTTGGTTTCAATTTTAATTTAATGACTTAAAGGATTTTTTCCCT s panTro1.chr19_random 5522152 155 + 57627672 TTAAGTATTACTCAGTAAATGCTAAAG-CAAATGCTGTAGTATG-TTAATCTTACTGTCGTTGGCTATCAAACCTTTCATATGCC-AATTTTATTCTAAAACAGTCAAGTGATTGTTTCGGTTTAAATTTTAATTTAATGAC--AAAGGATTTTTTCCCT s canFam1.chr9 26572750 141 - 53642819 TCAAGTTTCACTCAGTAAATGTTAAAG-----------AGTGTGATTAATCCTACTACAATTCACTACCAACCTTTTCATATACCAAATTTTATTCTAAAGTAGTGAAGTTA---TTCTGGTTTACAT-----TTCAATGACTTAAAGGATTTTTTTCCT a score=33822.0 s hg17.chr17_random 800531 168 + 2618010 TAAAACTTCTAAG-----TATTTCATTATA-ATATTATTTCATCATTAGGCTTAAAGGAAAATATGTGGTCAATTGAGTTGTTATTTATTATACATGATAGCTTGACATCATCTTTTTAGGGATGGAAAACAGCTCCAGGGACCAAGTCTAACTCAGTTTTTTGATATAAGAAT s panTro1.chr19_random 5522307 168 + 57627672 TAAAACTTCCAAG-----TATTTCACTATA-ATATTATTTCCTCATTAGGCTTAAAGGAAAATATGTGGTCAATTGAGTTGTTATTTATTATACATGATAGCTTGACGTCATCTTTTTAGGGATGGAAAACAGCTCCAGGGACCAATTCTAACTCAGTTTTTTTATGTAAGAAT s rn3.chr10 74720652 159 + 110733352 TAAACTTTGTAAG-----AACTT-AGGATACACCTTTTATTCTAATCACCCTAGAAGAAAAA---GCAGTCAATAGACTCATTACTTATAAT-----AGCACTGGAAGTAACCTCTTTAGAGGTTGGTAACAGCT-TAGGGGCTAATTCCAATTCAACTTTATCAAATAAATAT s canFam1.chr9 26572891 156 - 53642819 TGAAGCTTCCAAGATAAATTTTTCATTACA-GTATTATTTTATCAT---GCCTGAAAAAAAAGATATAGCCAATGAAGTTGTCA---GTTATATGTGATAG-----------CGTTTTAGGGGTGGAGAACAGTTCAAGGGGACATTTCTAACTCAGTTTTTCCAAATAAAAGT a score=2032.0 s hg17.chr17_random 800699 9 + 2618010 TTACCTGTC s panTro1.chr19_random 5522475 9 + 57627672 TTATTTGTC s canFam1.chr9 26573047 9 - 53642819 TTACTTGTC a score=20428.0 s hg17.chr17_random 800708 323 + 2618010 ggccgggtgcaatggctcacacctgtaatcccagcactttgggaggccgaggcgggcggatataggtcagcagatcaagaccaggagttcaagaccagcctggccaagatggtgaaaccccatctgtactaaaactacaaaaattagccaggcgtgatggcaggcacctgtaatcccacctacttgggaggctgaggcaggagaatcacttgaaccc-ggttcaagtgagccggc------tgcagtgagccaagatcacgccactgcactccagcctgggcaataagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaagaaT s panTro1.chr19_random 5522484 290 + 57627672 agccaggcgcaatggctcacacctgtaatcccagcactttgagaggccgaggcgggtgga------tca------cgaggttaggagttcaagaccagcctggccaagatggtgaaaccccatctgtactaaaactataaaaattagccaggtgtgatggcaggcacctgtaatcccagctactcgggaggctgagg-aagagaatcacttgaaccctgg-----------cggcagaggttgcagtgagccaagatcacgccactgcactccaggctgggcaataagagtgaaactccatctcaaaaaaa----------------aaT a score=914.0 s hg17.chr17_random 801031 9 + 2618010 GTACTAGTT s panTro1.chr19_random 5522774 9 + 57627672 TTACTAGTC s rn3.chr10 74720811 9 + 110733352 GTATTTATT a score=6833.0 s hg17.chr17_random 801040 53 + 2618010 TGAATCATAAC-----AATTTCT-----TCCTACTCAAAGAGACTACATTGGAGGAAGCCAAA s panTro1.chr19_random 5522783 54 + 57627672 TAAATCATAACAATGTAATTTCT-----TCCTACTCAGAG----TACATTGGAGGAAGCCAAA s rn3.chr10 74720820 58 + 110733352 TAAATCACTTTAAAGACACTTCTAGGACACCTCCTCACAAAGGCCACAGTAGA-----TATAA s canFam1.chr9 26573056 44 - 53642819 TAAATCA--------------CT-----TCCTATTCAAAAAGACTATATTGGAGGGAGCCAAA a score=1542.0 s hg17.chr17_random 801093 7 + 2618010 ACAGAAG s panTro1.chr19_random 5522837 7 + 57627672 AGAGAAG s rn3.chr10 74720878 7 + 110733352 ACAGAAG a score=18665.0 s hg17.chr17_random 801100 225 + 2618010 Cttatttatttatatac------------tttatttatttatttttgagacagagtcttgctctgtcacccaggctggagtacagtggtgtgatcttggctcactgcaacatctgcctcccgggttcaagcgattctcctgcctcagcctccctagtagctgggattacaggtgtgtgccaccacggccagctaatttttgtatttttagtagagacgggttttcaccatgttggcc s panTro1.chr19_random 5522844 237 + 57627672 Gttatttatttatatactttatttatttatttatttatttatttttgagatggagtcttgctctgtcacccaggctggagtgcagtggtgtgatctcggctcactgcaacatccgcctcccgggttcaagcgattctcctgcttcagcctccctagtagctggaattacaggtgtgtgccgccaccactagctaatttttgtatttttagtagagatgggttttcaccatgttagcc a score=8858.0 s hg17.chr17_random 801325 92 + 2618010 aggctggtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccaagcccagccT s panTro1.chr19 35010308 92 - 82489036 aggctggtctcaaactcctgacctcaggtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccaagcccagcCT a score=10019.0 s hg17.chr17_random 801417 124 + 2618010 AGAGAAGCTTATTTTTTAAAAGAAAATACACAAAAAAATCAAAATCTCATAAGTCCAGTTGTAATTTTTTTTTTGGCTTTTAAAAACTGTTAATGCCCTCAAATATTCTCCTATCCAATCACTG s panTro1.chr19 35010400 123 - 82489036 AGAGAAGCTTATTTTTTAAAAGAAAATACACAAAAAAATCAAAATCTCTTAAGTCCAATTGTAATTTTTTTTT-GGCTTTTAAAAAATGTTAATGCCCTCAAATATTCTCCTATCCAATCACTG s canFam1.chr9 26573100 60 - 53642819 AGAGAATCTCACTTTTAAAAAAATTGTACAT-GAAATTTAAAAATCTCATAAATCCAACCA--------------------------------------------------------------- a score=48055.0 s hg17.chr17_random 801541 215 + 2618010 TATTTTAAATGGcattcctccaacaaatatttgtt-gagcc-----------------------------------------cccactatgtgccaggATTGAAATGTCAAATTGAAGGAGGCAATAGCTACTGAAGTAAAGCAAAAAAA--GTACTGGT------TATTtttccttctataaaatgacctagtaataaccgctttacccaggagagttgctgtaaagatctaataacatgacacatataaCCACA-CCCCTAAAG s panTro1.chr19 35010523 216 - 82489036 TATTTTAAATGGcattcctccaacaaatatttgtt-gagcc-----------------------------------------cccactacgtgccaggATTGAAATGTCAAATTGAAGGAGGCAATAGCTACTGAAGTAAAGCAAAAAAAA-GTACTGGC------TATTtttccttctataaaatgacctagtaataaccgctttacccaggagagttgctgtaaagatctaataacatgacacatataaCCACA-CCCCTAAAG s rn3.chr10 74721122 228 + 110733352 TATATATAAAGGAATTCACCCAAC----ACTGATT-GAAGCCCCCACCCCACCTCGCCACCCTCCCACGTCCCCACCCCCTTCCCACCCCGTCTCAAGATCAAAATGCCAAATTG-GGTGGGCTCAAGTTGCTAAGGAAAAAAAAAGCAAACCAACCGACCCATTTTCTTTTTCCTTCTATAAA-----CCGGTAATGACTGC----CTCATGAGAATGGT-----------------------CATAAAAGCACAGGCTCTGAGG s canFam1.chr9 26573160 216 - 53642819 TAATTTAAATGGTattcatccaacaaatatttatcagggac-----------------------------------------cccactatgtgccaggAATGAGATGTTAAACTGAAGGAATCAAAACCTACTAAAGTCAAGCAAAAAAA--GTACTGGG-----TTTTTTTTCCTTCTATAAA-TGACTTCATAATAACTGCTTCACTCAAGAGAGTTGCTGTAAAGATCTAATAACATGACATAAACAACCACA-TTTTTAAAA a score=1852.0 s hg17.chr17_random 801756 12 + 2618010 AATGAGGTGTTa s panTro1.chr19 35010739 12 - 82489036 AATGAGGTGTTa s rn3.chr10 74721350 12 + 110733352 AATGCCTTGTCA a score=23995.0 s hg17.chr17_random 801768 300 + 2618010 ccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacactctggggactgttgcggggtgtggggaggggggagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctacaacttaaagtgtaataataataaaataataaaattaaaaaaagaaattttgcttaaataaatattataataaaaaaaaC s panTro1.chr19 35010751 288 - 82489036 ccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacaccggggcctgctgtggggtcaggggaggggggagggatagcattaggagatatacctaatg-taaatgacgagttaatgggtgcagcacaccagcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaacttaaagtgtaataataataaaataaaaaAAT---------AAATTTTGCttaaataaatattataataaaaaaa-- a score=4222.0 s hg17.chr17_random 802068 19 + 2618010 GAATGAGGTGTTATTAAAA s panTro1.chr19 35011039 19 - 82489036 GAATGAGGTGTTATTAAAA s canFam1.chr9 26573376 19 - 53642819 GAAAGAAGTGTTATTAAAC a score=31545.0 s hg17.chr17_random 802087 93 + 2618010 TGTTTGCAAGAGAAACCCTAGTAATTCCAAGCACATATTTTAGGAATGGTTTCTTGTGTAGAAAATCCTGGAATGTGAGGCTCTGCTGATTTT s panTro1.chr19 35011058 93 - 82489036 TGTTTGCAAGAGAAACCCTAGTAATTCCAAGCACATATTTTAGGAATGGTTTCTTGTGTAGAAAATCCTGGAATGTGAGGCTCTGCTGATTTT s rn3.chr10 74721366 93 + 110733352 TGTTTACGAGGGAAGCCTTGTCAACTCCCAGCATATATTTTATGGATAGCTTTGTATGTAGAAAATCTCTAAATCTGAGGTTTTATTAATTTT s canFam1.chr9 26573395 91 - 53642819 AGTTTACAAGAGAAACCTTGGTGATTCCAATGACATA--TTAGGCACTGTTTGGTGTGTGGAAAATACTTGAATGTGAGGCTCTATGGATTTT a score=819.0 s hg17.chr17_random 802180 3 + 2618010 TTT s panTro1.chr19 35011151 3 - 82489036 TTT s rn3.chr10 74721459 3 + 110733352 TTT a score=29346.0 s hg17.chr17_random 802183 325 + 2618010 AATGCATATTCTCTTCTTATGTATGCGGAAttttttttttttttt----gagatagagccttgctctgttgcccaggctggaatgcactggcacgatcttggctcactgcaactgccacctcctggtttcaagtgattctcctgcctcagcctcccgagtagatggaattacaggcgtgtgccaccgcacttggctaatatttgtatttttagtagagatggggtttcaccatattggccaggctgttctagaactcctgaccttgtgatccacccacttcagcctcccaaagtgctgggattacaggcatgagccactgtacctggcc s panTro1.chr19 35011154 329 - 82489036 AATGCATATTCTCTTCTTATGTATGTGGAAtttttttttttttttttttgagatagagccttgctctgttgcccaggctggaatgcactggcatgatcttggctcactgcaactgctacctcctggtttcaagtgattctcctgcctcagcctcccgagtagatggaattacaggcatgtgccaccacacttggctaatatttgtatttttagtagagatggggtttcaccatattggccaggctgttctagaattcctgaccttgtgatccacccacttcagcctcccaaagtgctgggattacaggcatgagccactgcaccaggcc a score=50115.0 s hg17.chr17_random 802508 282 + 2618010 --TATTTTTGTTTTTACTAATGTTTCAAGAGACCCACTTTATGTACAGAATTCTGGCTACAACCTAACAAATGAGTTGCTC---TGTTCATCAGTTATAGCCAATTTAAGTAATTATGAAAAGCTCAACAATACTTTAACTGGCAATGAAAGCGTCAATATCTCACATTTACCACCACAACTTAGGATTTCTTGGTAGCTAAATAAAATGCTTCTA-----TTTTGTGGGGG-GAAACTGTCACATAAGTTGAAATTCTGCAATGTTCAATTGATGAAAAGGTCTCTATGTTA s panTro1.chr19 35011483 282 - 82489036 --TATTTTTGTTTTTACTAATGTTTAAAGAGACCCACTTTATGTACAGAATTCTGGCTACAACCTAACAAATGAGTTGCTC---TGTTCATCAGTTATAGCCAATTTAAGTAATTATGAAAAGCTCAACAATACTTTAACTGGCAATGAAAGCATCAGTATCTCACATTTACCACCACAACTTAGGATTTCTTGGTAGCTAAATAAAATGCTTCTA-----TTTTGTGGGGG-GAAACTGTCACATAAGTTGAAATTCTGCAATGTTCAATTGAGGAAAAGGTCTCTATGTTA s canFam1.chr9 26626449 276 - 53642819 GTTACTAT--TTTTTATTAATTTTT--AGGGATCCACTTTACATGAAGAATTCTGTCTATAACCTAACAAATGAATTATTCTTGTGTTTATTATT--TGGCCAGTTTAAGTAATTATGAAAAG-----------TTTAACTGGCAGTGAAGGCTTAGTTATATAACTTTTGCCACCATGACTCTAGATTTCCTTAGAGCAAGGTAAGATATATCTAGACTTTTTTATGGGGGCAAAATTGTCAAACTAGTTGAAACTTTGCAATGCCCAACTGAGGAAAAGACCTCTATGTTA a score=19356.0 s hg17.chr17_random 802790 121 + 2618010 AATCAAAGGTATAAATTCCACATCAGTAGTACATGA-------------AAGAGAAAAAAAAA--------GCCAAAATTAAAGTGATCCATGCCCACTTCCCTGAGTGAACCT--AAGATTTTACTAACAGAGATGCCGTAAC s panTro1.chr19 35011765 121 - 82489036 AATCAAAGGTATAAATTCCACATCAGTAGTACATGA-------------AAGAGAAAAAAAAA--------GCCAAAATTAAAGTGATTCATGCCCACTTCCCTAACTGAACCT--AAGATTTTACTAACAGAGATGCCGTAAC s canFam1.chr9 26626922 144 - 53642819 AATCAAAGCTATAAACTCCACATCAGTAGAAAACAAAATTCTGTATCACAAGAGAAAATAAAGAAAGCTATGCAAGAATTAAAATGAATCATGAATACTTCACTAACAGAACATGAGAGATTTTGCTAAGGAGTATACAATGAT a score=23863.0 s hg17.chr17_random 802911 172 + 2618010 TTTGA-TCATGCACACATCAAACTTGAATTTAAAAACATGCATGCACTCACTCATCTTTTATCTCTTATGTAATT----AATACTGTAAGATTATATTTTGCCTACGTGCTCT----ATATTACTA-----------ATTTATAGGATTATTACTATTCAGTGTTGTTTACTTGAAACCATACTGTACTATA s panTro1.chr19 49797551 165 + 82489036 TTTGA-TCATGCACACATCAAACTTGAATTTAAAAACATGCATGCACTCACTCATCTTTTATCTCTTATG----T----AATACTGTAAGATTATATTTTGCCTATGTGCTCT----ATAT---TA-----------ATTTATAGGATTATTACTATTCAGTGTTGTTTACTCAAAACCATACTGTACTATA s canFam1.chr9 26627066 168 - 53642819 TTTGCTTCATGTAGACAT-AAACTTAA-----------------CATTCATTCATATTTCATCCCTTATGTAAATTGAAAATATTGTAAAATTATATTTTGCATATGTACTCTACTCATATCACTATATAATCATACATTTATAAAATTAT---TATTCAA---AATTTCCTCAAAACTATACTGTACTATG a score=23726.0 s hg17.chr17_random 803083 287 + 2618010 CACAACTTTTGCATTCCATGCTAACtttatttttttaactaattttttttt-------atacagagtctcactcactctattggccaggctggagtgcagtggcacgatcttggctcctgcaacctctgcctctcgggttcaagtcattctcctgcctcagcctcccaagtagttggtaccacaggtacatgccaccacacccggctaatttttgtatttttggtagagatggggtttcaccatgtgggccaggctggtctcgaactcctgacctcaagGTTATAGGCGTGAGC s panTro1.chr19 49797716 294 + 82489036 CACAACTTTTGCATCCCATACTAACTTAATTTTTTTAATTAAtttttttttttttttgatacggagtctcactcactctatcgctcaggctggagtgcagtggcacaatcttggctcctgcaacctctgcctcccgggttcaagtgattctcctgcctcagcctcccaagtagttggtaccacaggtgcatgccaccacacccggctaatttttgtacttttagtagagatggggtttcaccatgttagccaggctggtcttgaactcctgacctcaagGTTATAGCCATAAGC a score=42600.0 s hg17.chr17_random 803370 288 + 2618010 CACGATGTCCCAACTCCATGCTAACTTTAGAGCTTATTTCCCATCCCATAAGA-TACAACACTACT-TGTGTTATATAGTGAGCAGTGTGGGGAAGAAAAGCAT-AGAATTAAGTTAGTGACAAATCCAGTGAACTCAAAAAGA----GGGAAAAAA---CCACTCCCAAACAATTGTTTTCCCCATATTCTATTCTCCCTAGAGGTAGTCCATACAGGAACGACAAAAGAAAAAAAAGGATACAAAATGAGAAAGAT---GTTCATGTGACATA-TAAGTACAGTAATAAAATCAACAAGC s panTro1.chr19 49798010 288 + 82489036 GACCATGCCCCAACTCCATGCTAACTTTAGAGCTTATTTCCCATCCCATAAGA-TACAACACTACT-TGTATTACATAGTGAGCAATGTGGGGAAGAAAAGCTTAAGAATTAAGTTAGTGACAAATCCAGTGAACTCAAAAACA----GGGAAAAAA----CACTCCCAAACAATTATTTTCCCCATATTCTATTCTCCCTAGA-GTAGTCCAAAAACAAATGACAAAAGAAAAAAAAGGATACAAAATGAGATAGAT---GTTCATGTGACATATTAAGTACAGTAATAAAATCAACAAGC s canFam1.chr9 26627254 276 - 53642819 CACAATTTCTCCATTCCATGCTAACTTTAGAACTTACCCTCTGCCCCAAAAGACTACAACACTATTATGTATTATAATGTGAATAGTAT----AAAAAAAATTG-AGAA-----TTAGTGACAAATCTAGTGAACTCAGAAATAAGAGGGGAAAAAAACCCAACTTCCAAATTATTATTTTCTCCATATTCCATTCTCCCTAGAGGTAGTCTAAAAAGAAATGACAAAGGATAATGCCAAGTAACAAAGGAAAAAAATGAGGTTTTTGT----------------TATCAAAGTCTACAATC a score=6145.0 s hg17.chr17_random 803658 87 + 2618010 ATATATGGTATTTAAGCAAAATAGTATGTATGCATTGATGGTCATCTGATATAAATCCATCATTTCTGTTGGCCAACATCTAAAACC s panTro1.chr19 49798298 83 + 82489036 ATATGTGCTATTTGAGCAAAATA----GTATGCATTCATGGTCTTCTGATATAAATCCATCATTTCTGTTGGCCAACATCAAAAACC a score=1177.0 s hg17.chr17_random 803745 6 + 2618010 TTCACT s panTro1.chr19 49798381 6 + 82489036 TTTACT s canFam1.chr9 26627764 6 - 53642819 TTTGCT a score=36964.0 s hg17.chr17_random 803751 99 + 2618010 ----TTTCTGAGGAGAC---AAGCTATAAATC---TATACGGATATTTCTACAATGAGA--------ATTCATTATT-------ACATATGAACCAATATAATTTGATGTCAAATATTCACAAT s panTro1.chr19 49798387 99 + 82489036 ----TTTCTGAGGACAC---AAGCTATAAATC---TATACAGACATTTCTACAATGAGA--------ATTCACTATT-------ACATATGAACCAATATGTTTTGATGTCaaatatttaaaat s mm5.chr11 86107384 103 + 121648857 ----TTTCTAAAGAGACTTTGGACTAGAGATACAGCACACAGACACCTCTTCAATGAAA------TTATTTATTATC-------AAAGATGAATCAATAT-TTCTGCTATCAAATATT---AAT s rn3.chr10 76675173 113 + 110733352 ----TTTCTAAAGAGACTTTGGACTAGAGATACAGCACACAGACACTTATTCAATGAAAACTAATGCATTTATTATT------CAAAGATGAATCACTAT-TTCTGTTATCAAATATTAACATT s canFam1.chr9 26627770 114 - 53642819 TTTCTATTTGAGGAGAC---AAGGTACAAATC---AATACAGATACTTCCACAATGAAA----ATAAATTTACTACTGTTTCCTATGAACCAGTCAATATATTTTGATGTCAAATATTCACAAT a score=-848.0 s hg17.chr17_random 803850 12 + 2618010 ---TAG-GTTTAAAAA s panTro1.chr19 49798486 13 + 82489036 ---taatgttaaaaaa s mm5.chr11 86107487 12 + 121648857 ---TAACATTACAAA- s canFam1.chr9 26627884 13 - 53642819 CAACAG-GTTAAAA-- a score=2592.0 s hg17.chr17_random 803862 9 + 2618010 ATCCCCTAC s panTro1.chr19 49798499 9 + 82489036 atCCCCTAC s canFam1.chr9 26627897 9 - 53642819 ATCCCCTAC a score=6023.0 s hg17.chr17_random 803871 72 + 2618010 TTggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcgggtggatcatgaggtc s panTro1.chr19 49798508 72 + 82489036 TTGgcctggcacggtggctcatgcctgtattcccaacactttgggaggccaaggcgggtggatcacgaggtc a score=46032.0 s hg17.chr17_random 803943 541 + 2618010 aagaaaccaagaccatcctggccaacatggtgaagccctgtctctactaaaaatacaaaaattaactgggcgtggtggcaggcgcctgtagtcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatcgcgccactgcaccccagcctgacgacagagtgagactcagtctcaaaaaaaaaaaaaaaTCCCCTACTTATGTTAAGAGTACCAAAAATAGggccaggaatgatggc--tcatgcctataattttggcactttgggaagccgaggtgggaagatagcttgagtccaggagtaaaatagtgagactctgtctctacaaaaaaataaaaaattagctggatggggcacacacctgtagtccaggtactcacgaggctgaaatgggtggatcacttgagcctgggaggtcaaggctgtagtgaactgtgatcacaccactacaccctacacccagcctgggctacaaggtgagaccctgtctcaaaaaaaaaaaaaaaaaa s panTro1.chr19 49798904 541 + 82489036 aagaaatcgagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattaactgggcgtggtggcgcacgcctatagtcccagctactcgggaggctgaggcaggagaatcactcgaacccaggaggcagaagttgcagtgagctgagatcgcgccactgcactccaacctggtgacagagcaagactccatctcaaaaaaaaaaaaaaaTCCCCTACTTATGTTAAGAGTACCAAAAATAGggccaggaacgatggcgttgatgcctataattctggcactttgggaagccaaggcaggaagatagcttgagtccaggagtaaaatagtgagactctgtctctacaaaaaaataaaaaattagctgcatgtggcacacacctgtggtccaggtactcacaaggctgaaatgggtggatcacttgagcctgggaggtcaaggctgcagtgaactgtgatcacaccactacac--tacacccagcctaggttacaaggtgagaccctgtctcaaaaaaaaaaaaaaaaaa a score=11258.0 s hg17.chr17_random 804484 85 + 2618010 G------GTACCAAAAATCTATAGCTGTTTCAGGAATAAAATACATGTAGTTAGTGAGGTTTTTCTCTCCCACTGCTATGACT---TAATTTTT s panTro1.chr19 49799445 90 + 82489036 aaaaaaaGTACCAAAAATCTATAGCTGTTTCAGGAATAAAATACATGTAGTCAGTGAGGTTTTTCTCCCCGACTGCTATGACT----AATTTTT s canFam1.chr9 26627920 81 - 53642819 ------TGTACCAAAAATCTGTAGCTATTTCAGGAATAGAATAGTTATAGTGAG-------CTCTTCTCCTATGGTTATAATAGTGTGACTTCC a score=2723.0 s hg17.chr17_random 804569 5 + 2618010 GGTTG s panTro1.chr19 49799535 5 + 82489036 GGTTG s mm5.chr11 86108201 5 + 121648857 GTTTG s rn3.chr10 76676111 5 + 110733352 GTTTG s canFam1.chr9 26628001 5 - 53642819 AATTG a score=32660.0 s hg17.chr17_random 804574 160 + 2618010 AGATGCTAAGCCAAACATCATTTTAAGT-CTGTGGCCCAACCAAAAAAGGGAATCA-TACTCTCCAAAGAATTGTACATTCCCACTCTAATTGCTAAAATAAAATGTT-GGATTATGAAAATCAATTTTGTAGGT-----ATCAATA---AGTTAT-AAGAGCATGGCTTAT s panTro1.chr19 49799540 160 + 82489036 AGATGCTAAGCCAAACATCATTTTAAGT-CTGTGGCCTAAAAAAAAAAGGGAATCA-TACTTTCCAAAGATTTGTACATTCCCACTCTAATTGCTAAAATAAAATGTT-GGATTATGAAAATAAATTTTGTAGGT-----ATCAATA---AGTTAT-AAAGGCATGGCttat s mm5.chr11 86108206 154 + 121648857 TGATGCTGACCCACACATCATCTAAGTTACTATCACTCAACCAAACA--TGAATCA-----CTCCAAAGATTCAAACATTCTCACTGTAATTTCTAAAACAGAATGTTAAGATTATGAAAATCAA-TTTGTAGAT-----ACCAGTA---AGTTATCAAAGAAATGGCTT-- s rn3.chr10 76676116 136 + 110733352 TTATGCTGAGCCACAC-------TAAGT-C-----------------ACTAAGTCACTACCACTCAGCTAAACATGAATCC---CTGCAATTTCTAAAACAGAATGTTAAGATTATGAAAATAAA-TGTGTAGGT-----ACCAGTAAGTAGTTATCAAGGAAATGGCTT-- s canFam1.chr9 26628006 163 - 53642819 AGATACTGAGTCAAACATCATTTTAAGT-CAATGGCCTATCTAAAAAA-GGAATCA-TATACTCCAAAGAATTATATAGTCCTACTCTAACTGCTGAAAT-GGATACT-GGATCATGAGAATCAATTTTCTAACTTAGCAATTAGAA---AACTTA-AAAAACGTTAAATAT s danRer1.chr19 9709677 147 + 24317769 AGATACCATGTTACACATTTTTCCAAAT-AAATCCTTAAATGCAAGAAAG-------TATTCTGCAAAAAAA-AAACCTCCAAATGTTACCCAATATAAAAAAATGTT------ACCCAACTAAC-TTTCAAAAT-----GCTAAAA---TGTGGC-AACTCAATTCTTAAA a score=6982.0 s hg17.chr17_random 804734 37 + 2618010 TTA---AA--AAAAAAA--------GTGGGCCAGGTTAC----------CTACATGA---GCT s panTro1.chr19 49799700 45 + 82489036 tta---aa--aaaaaaaaaaaaaaaGTGGGCCAGGTTAC----------CTACATGA---ACT s mm5.chr11 86108360 34 + 121648857 ------AA--AAGCAAA--------GTCATTCAAGCTTC----------CCACATAA---ACT s rn3.chr10 76676252 34 + 110733352 ------AA--AAGCAAA--------GTCATTCAGGCTAC----------CCACATAA---ACT s canFam1.chr9 26628171 39 - 53642819 CTA---AATTAAAAATA--------GTATCTCAAGTTAT----------CTGTATCA---ACC s fr1.chrUn 152682679 43 + 349519338 TTAAATAA--ACACGTA--------GTCTCACAATTCAC----------CCAACTGACACACT s danRer1.chr19 9709824 44 + 24317769 ------AG--AGAGAGA--------AAAGTCCAAATTGCAAGTCCCTTTTTATCTGT---ATT a score=2618.0 s hg17.chr17_random 804771 21 + 2618010 GCAAAGCAAGC-AAACTGAATT s canFam1.chr9 26628210 21 - 53642819 GCAAAGCAAGT-AAACTGAATT s fr1.chrUn 152682722 22 + 349519338 ATAAATGAAGTGGAACTGAACT s danRer1.chr19 9709868 19 + 24317769 CTATGGCAA---AAACAGGCTT a score=6110.0 s hg17.chr17_random 804771 20 + 2618010 GCAAAGCAAGC-AAACTGAAT s panTro1.chr19 49799745 20 + 82489036 GCAAAGCAAGC-AAACTGAAT s canFam1.chr9 26628210 20 - 53642819 GCAAAGCAAGT-AAACTGAAT s fr1.chrUn 152682722 21 + 349519338 ATAAATGAAGTGGAACTGAAC s danRer1.chr19 9709868 18 + 24317769 CTATGGCAA---AAACAGGCT a score=2618.0 s hg17.chr17_random 804771 21 + 2618010 GCAAAGCAAGC-AAACTGAATT s canFam1.chr9 26628210 21 - 53642819 GCAAAGCAAGT-AAACTGAATT s fr1.chrUn 152682722 22 + 349519338 ATAAATGAAGTGGAACTGAACT s danRer1.chr19 9709868 19 + 24317769 CTATGGCAA---AAACAGGCTT a score=1092.0 s hg17.chr17_random 804791 2 + 2618010 TT s panTro1.chr19 35013627 2 - 82489036 TT s canFam1.chr9 26628230 2 - 53642819 TT s danRer1.chr19 9709886 2 + 24317769 TT a score=91.0 s hg17.chr17_random 804792 1 + 2618010 T s canFam1.chr9 26628231 1 - 53642819 T a score=91.0 s hg17.chr17_random 804792 1 + 2618010 T s canFam1.chr9 26628231 1 - 53642819 T a score=60.0 s hg17.chr17_random 804792 2 + 2618010 TT s danRer1.chr19 9709887 2 + 24317769 TC a score=910.0 s hg17.chr17_random 804793 1 + 2618010 T s panTro1.chr19 35013629 1 - 82489036 T s mm5.chr11 86108394 1 + 121648857 T s rn3.chr10 76676286 1 + 110733352 T s canFam1.chr9 26628232 1 - 53642819 T a score=0.0 s hg17.chr17_random 804794 3 + 2618010 CTT a score=1385.0 s hg17.chr17_random 804794 3 + 2618010 CTT s panTro1.chr19 35013630 3 - 82489036 CTT s mm5.chr11 86108395 3 + 121648857 CTC s rn3.chr10 76676287 3 + 110733352 CTC s canFam1.chr9 26628233 3 - 53642819 CTT s fr1.chrUn 152682744 3 + 349519338 CAA a score=-9649.0 s hg17.chr17_random 804797 42 + 2618010 ATCG--AAGAGCCCATCC---------TCATAC-------------TTAAAATTTCC---CATG--ACTAC s panTro1.chr19 35013633 45 - 82489036 ATCG--AAGAGCCCATCC---------TCATAC-------------TTAAAATTTTCTTCCATG--ACTAC s mm5.chr11 86108398 31 + 121648857 ACTG------------CA---------TCA-AC-------------CTGAGGTTTCC---TACA--GCTGC s rn3.chr10 76676290 31 + 110733352 ACTG------------CA---------TCATAC--------------TGAAGTTTCC---TATG--GCTGC s canFam1.chr9 26628236 52 - 53642819 ATTGAAAAGGGTCCATCATACTTGAATTCATAC-------------TTGA-TTTTCT---CATG--GCTAC s fr1.chrUn 152682747 57 + 349519338 ACCC--AAAACTGCAACC---------TTACACACTTAGCGTGAAGATGGAACCTCT---AATGATACAAC s danRer1.chr19 9709889 31 + 24317769 ----------------------ATAGAGGACAC-------------TGAAATCATGA---CTTG--GCTGC a score=0.0 s hg17.chr17_random 804839 15 + 2618010 ATGGAAATTCTTTCA a score=6977.0 s hg17.chr17_random 804839 12 + 2618010 ATGG------AAATTCTT s panTro1.chr19 35013678 11 - 82489036 -TGG------AAATTCTT s mm5.chr11 86108429 18 + 121648857 ATGGAGACCTAAGTTCTT s rn3.chr10 76676321 18 + 110733352 ATGGAGACTTAAATTCTC s canFam1.chr9 26628288 12 - 53642819 ATGG------AAATTCTT s fr1.chrUn 152682804 12 + 349519338 AGGG------ACATCGTT a score=4230.0 s hg17.chr17_random 804851 3 + 2618010 TCA s panTro1.chr19 35013689 3 - 82489036 TCA s mm5.chr11 86108447 3 + 121648857 TCA s rn3.chr10 76676339 3 + 110733352 TCA s canFam1.chr9 26628300 3 - 53642819 TCA s galGal2.chr19 2505013 3 - 9463882 TCA a score=0.0 s hg17.chr17_random 804851 3 + 2618010 TCA a score=5922.0 s hg17.chr17_random 804854 3 + 2618010 CTT s panTro1.chr19 35013692 3 - 82489036 CTT s mm5.chr11 86108450 3 + 121648857 CTT s rn3.chr10 76676342 3 + 110733352 CTT s canFam1.chr9 26628303 3 - 53642819 CTT s galGal2.chr19 2505016 3 - 9463882 CTT s danRer1.chr19 9709920 3 + 24317769 CTT a score=282.0 s hg17.chr17_random 804854 3 + 2618010 CTT s danRer1.chr19 9709920 3 + 24317769 CTT a score=231839.0 s hg17.chr17_random 804857 112 + 2618010 ACCAAAAAGACCTGATTGGCACTTTCACTGAGAGTTGCGTCATCTGGGCTGTCGACAGGTGTCTGACGTGTAAACTTGGAATCAAACTGACTTACATCCTCTTCAGATTGCT s panTro1.chr19 35013695 112 - 82489036 ACCAGAAAGACCTGATTCCCAGTTTCACTGAGAGTTGCGTCATCTGGGCTGTCGACAGGTGTCTGACGTGTAAACTTGGAATCAAACTGACTTACATCCTCTTCAGATTGCT s mm5.chr11 86108453 112 + 121648857 ACCAGAAAGACCTGGTTGGCACTTTCACTGAGAGTGGAGTCATCAGGGCTGTCAACAGGTGTCTGACGTGTAAACTTTGAATCAAACTGACTCACATCCTCTTCAGATTGCT s rn3.chr10 76676345 112 + 110733352 ACCAGAAAGACCTGGTTGGCACTTTCACTGAGAGTTGAGTCATCGGGGCTGTCAACAGGTGTCTGACGAGTAAACTTTGAATCAAACTGACTCACATCCTCTTCAGATTGCT s canFam1.chr9 26628306 112 - 53642819 ACCAAAAAGACCTGGTTGGCACTTTCACTGAGAGTTGAGTCATCTGGGCTGTCAACAGGTGTCTGACGTGTAAACTTTGAATCAAACTGACTCACATCCTCTTCAGATTGCT s galGal2.chr19 2505019 112 - 9463882 ACCAGAAAGACCTGGTTGGCACTTTCACTGAGAGTAGAGTCATCTGGGCTATCAACAGGTGTCTGACGTGTAAACTTTGAATCAAACTGGCTCACATCCTCTTCAGATTGCT s fr1.chrUn 152682816 112 + 349519338 ACCAGGAAGACTTGGTTGGCACTTTCGCTAAGCATGGAGTCGTCAGGGCTATCCACTGGAGTCTGGCTCGTGAACTTGGAGTCAAACTGACTGGCGTCATCGGCCGATTGCT s danRer1.chr19 9709923 112 + 24317769 ACCAAAAAGACCTGATTTGCACTTTCGCTCAGTGTGGAGTCATCAGGACTGTCAACGGGAGTCTGGCTGGTGAACTTTGAATCAAACTGGCTCACATCCTCAGCAGATTGCT a score=29135.0 s hg17.chr17_random 804969 156 + 2618010 TTATACAAACAAAATAATTTAGAAAATAATGAATAGTCCATATGA----CATCAATTAAATGCACT-------------GTAAGCTCTGG---GAGCT-C-----------TTTTCGCAGGGGTTAACTATAATAAAGTATTAGAATAGTCTTA---G----CAGGCAC---TTTTCTAAT-AGTGGAGAAATGCAAGT s panTro1.chr19 35013807 156 - 82489036 TTATACAAACAAAATAATTTAGAAAATAATGAATAGTCCATATGA----CATCAATCAAATGCACT-------------GTAAGCTCTGG---GAGCT-C-----------TTTTCGCAGGGGTTAACTATAATAAAGTATTAGAATAGTCTTA---G----CAGGCAC---TATTCTAAT-AGTGGAGAAATGCAAGT s mm5.chr11 86108565 138 + 121648857 TCATAAGAACAA---TGGTTAGAAAATGGTGAACAGTCTATATTATTCCTATCAATCAAAGGTGCC-------------ACAAGCCCTAT-----ATT-C-----------TTTGCACAGGGTTTAACTGTAATAAAACATGAGAATAATTTTA---G----CAGCCAC----------------AGACAAAAG----- s rn3.chr10 76676457 133 + 110733352 TCATAAGAACAA---TGGTTAGAAAATGGTGAACAGTCTATATTATTCCTATCAATCAAAGATGCC-------------ACAAGCCCTAG-----ATT-C-----------TTTGCACAGGATTTGACTGTAATAAAAC-----AATAATTTTA---G----CAGCCAT----------------AGACAATGA----- s canFam1.chr9 26628418 151 - 53642819 TTGTGAAAAACA---AAATTAGAAAATGATGAATAGTCTATATTATACATATCAACCAAATGCCATTACTTGCATTAGAGAAGGCTCTAGC--TAGAA-C-----------TCTTCACAGGGTTTGACTATAATAAAATCTCAGAATAGTCTTA---G----CAGGCAC----------------AGACTA-------- s galGal2.chr19 2505131 177 - 9463882 TTGCAAAAACAA------------AATGATTAAGGGTTTATATTACAGATATCAACCAAATGGCTTAGCGGTGATCAGTGTAGCCTCTGGATGGAGTT-CATTCCATAGGATTTTGGCAGAGCTCTGCTGTAGTAAAGCCCTGGAGTGGTGTCG---GAATCCTGTCGC-----TGCCAGT-GGGAGGTCACTATGGGC s fr1.chrUn 152682928 139 + 349519338 --GCCAAAACAA-GTGGGTTAGTGAAT----------------------CACCTGGCAAG-------------------TAAGGTCCCAGAGGAAGCTGC-----------TGTGTACAAGAAATACATTTAAAGAATTACCAGGAAAGGCTTAAATG----GAGGCTCGACTTTGTGAGCAAGGAGGTCATCCCAGT- a score=8775.0 s hg17.chr17_random 805125 48 + 2618010 G-------GAAGAAAAAAATGCAAGTGGAAAGTAC--------TGAGTCAA-----ATTACATCTTCA s panTro1.chr19 35013963 48 - 82489036 G-------GAAGAAAAAAATGCAAGTGGAAAGTAC--------TGAGTCAA-----ATTACATCTTCC s mm5.chr11 86108703 43 + 121648857 ----------AAAAAAAAATGCAGGTAGAAAG-----------AGAGTCAAC----AGTACATTTACA s rn3.chr10 76676590 38 + 110733352 ----------AAAAAAAAATGCAGGTAGAGTG---------------TCGT-----GGTACATTTACA s canFam1.chr9 26628569 47 - 53642819 ----------AAGAATAAATATAGGTGGGAAGTTT------CAAAGGTCAA-----ATTACATCTTCA s galGal2.chr19 2505308 62 - 9463882 ACTGACACTGAGAAATAAAGGCAAGGGGGAGGGGCAAAAATCATGGATCAAAAAGGAACACA------ a score=91.0 s hg17.chr17_random 805173 1 + 2618010 A s galGal2.chr19 2505370 1 - 9463882 A a score=91.0 s hg17.chr17_random 805173 1 + 2618010 A s rn3.chr10 76676649 1 + 110733352 A a score=273.0 s hg17.chr17_random 805173 1 + 2618010 A s panTro1.chr19 35014011 1 - 82489036 A s mm5.chr11 86109029 1 + 121648857 A a score=91.0 s hg17.chr17_random 805173 1 + 2618010 A s canFam1.chr9 26628616 1 - 53642819 A a score=13415.0 s hg17.chr17_random 805174 48 + 2618010 ATCTTAAACATGCACT--AAAAAAGATTTTAGTATACTGTTATTCCTATT- s panTro1.chr19 35014012 48 - 82489036 ATCTTAAACATGCACT--AAAAAAGATTTTAGTATACTGTTATTCCTACT- s mm5.chr11 86109030 48 + 121648857 ATTTTATATATGAATT--AACATAAATTTCAGTAGATAGTTACCATTCTT- s rn3.chr10 76676914 48 + 110733352 ATTTTATATATGAATT--AACATAGATTTTAGTAGATAATTATTATCCTT- s canFam1.chr9 26628617 44 - 53642819 ATTTTAAACAT--ATT--AAAGTAGATTTTTATTAGTACACACCATTT--- s galGal2.chr19 2505371 51 - 9463882 ATTAAAAAGATGCCTTTAAAAAAAAATCTCAAATTACAAACAAAAACTTTT a score=91.0 s hg17.chr17_random 805222 1 + 2618010 A s rn3.chr10 76676962 1 + 110733352 A a score=2364.0 s hg17.chr17_random 805222 5 + 2618010 AAAAA s panTro1.chr19 35014060 5 - 82489036 AAAAA s canFam1.chr9 26628661 5 - 53642819 AAAAA s galGal2.chr19 2505422 5 - 9463882 AGAAA a score=310.0 s hg17.chr17_random 805227 13 + 2618010 TGTGAATATATTg------ s panTro1.chr19 35014065 13 - 82489036 TGTGAATATATTg------ s galGal2.chr19 2505427 13 - 9463882 ------TACAATGGCAGTT a score=24044.0 s hg17.chr17_random 805240 305 + 2618010 actgggcatgatggctcaggcctgtaatcccagcactttgggaggctgaggcaggcagatcctgaggtcaggagttcaagaccagcctggccaataaagcgaaaccccgtctctactaaaactacaaaacatcagccgggcgtggtggcgggcgcctgtaatcctagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgccgcaagcagagatcgtgccactgcacaccagcccaggtgacagtgcgagagtctgtctcaattaaaaaaaaaaaaagaaaaga-------a s panTro1.chr19 35014078 295 - 82489036 actgggcatggtggctcacgcctgtaatcccagcactttgggaggctgaggtgggcagatcatgaggtcaggagttcaagaccagcctggccaataaagcgaaaccccgtctctactaaaaatacaaaacattagccgggtgtgatggcgggcacctgtaatcctagctactcgggaggctgaggcaggagaattgcttgaacctgggaggcagaggttgcagcaagcagagattgtgccactgcacaccagcccaggtgacagtgcgagagtctgtctcaa-----------------aaaTATATATATA a score=578.0 s hg17.chr17_random 805545 9 + 2618010 TATATCG-AG s panTro1.chr19 35014373 10 - 82489036 TATATCGTAG s galGal2.chr19 2505440 9 - 9463882 TCTTTCA-AG a score=-31.0 s hg17.chr17_random 805554 1 + 2618010 C s galGal2.chr19 2505449 1 - 9463882 T a score=300.0 s hg17.chr17_random 805554 1 + 2618010 C s panTro1.chr19 35014383 1 - 82489036 C s mm5.chr11 86109078 1 + 121648857 C a score=-1945.0 s hg17.chr17_random 805555 14 + 2618010 ----------TCAAAACAAGC-TGG s panTro1.chr19 35014384 14 - 82489036 ----------TCAAAACAAGC-TGG s mm5.chr11 86109079 7 + 121648857 ----------TTAAAAC-------- s rn3.chr10 76676963 7 + 110733352 ----------TCTAAAC-------- s galGal2.chr19 2505450 25 - 9463882 TTAACTCTGGTCACAACCAGTATAG a score=4749.0 s hg17.chr17_random 805569 22 + 2618010 AAAAAATGTGAATATCAAT-TTC s panTro1.chr19 35014398 22 - 82489036 AAAAAATGTGAATATCAAT-TTC s mm5.chr11 86109086 14 + 121648857 --------TGAGTATCAGT-TTT s rn3.chr10 76676970 10 + 110733352 --------TGAGTATCAT----- s canFam1.chr9 26628666 23 - 53642819 AAAAATTTTGAATGTCAGTCTTT s galGal2.chr19 2505475 22 - 9463882 AACAGCTGCAACTATTAAT-TTC a score=22228.0 s hg17.chr17_random 805591 60 + 2618010 CCCTCTCACAAAGCTTCAGTGTGCCTAGTCCACTGGCTAAATCCCTGTTTAGAGATAATT s panTro1.chr19 35014420 60 - 82489036 CCCTCTCACAAAGCTTCAGTGTGCCTAGGCCACTGGCTAAATCCCTGTTTAGAGATAATT s mm5.chr11 86109100 53 + 121648857 CC--TTCATAACCCTTTAGTGCATCTAGT-CACTCAATAAATTCC----TAGAGATAATA s rn3.chr10 76676980 44 + 110733352 -----------AACCTTAGTATATCCAGT-CACTCACTAAGTTCC----TAGAGATAAGT s canFam1.chr9 26628689 60 - 53642819 CCCACTTAAAAAGCTTCAGTGTGCCTAGTCCACTGGCTAAATTTTCTAGTAGAGATAATT a score=20500.0 s hg17.chr17_random 805651 94 + 2618010 A---ATTCAGTTGGCTACTGCAGGTTTGTAATAAACCT------GAAAAACTACTGAAGCAGAGTTAAAACATGAATAATACTGGTAAGATGCTCCAGTTAAA s panTro1.chr19 35014480 94 - 82489036 A---GTTCAGTTGGCTACTGCAGGTTTGTAATAAACCT------GAAAAACTACTGAAGCAGAGTTAAAACATGAATAACACTGGTAAGATGCTCCAGTTAAA s mm5.chr11 86109153 100 + 121648857 ATGTGCTCAA-CGGCTGTTGTATATCTACAGTAAGTCTAGATAAGGATAACTATGGAAGAAGAGTTCAA--ATGAGACACAGAGATAAGATGCCGGAGTTAGC s canFam1.chr9 26628749 90 - 53642819 ---TGCTTAGTTGACTACTGCAGGTGTATGATAAACCT------GAAAAACTATTGAAGCAGAGTTTCAACACAAAACACATTTATAAAATGCTCTGAA---- a score=12119.0 s hg17.chr17_random 805745 71 + 2618010 GTTTCTTCTCACAGCTCATTTCATTCCTTCAGAAATCTAAAGGAGCAAAAATAATTTTCTATTCCGCATGG s panTro1.chr19 35014574 71 - 82489036 GTTTCTTCCCACAGCTCATTTCATTCCTTCAGAAATCTAAAGGAGCAAAAATAATTTTCTATTCTGCATGG s canFam1.chr9 26628839 68 - 53642819 GTTTCTTCTATTATTTCATCTGA---CTACAGATTTCTCAAGGAGCAAAAATGGTATTCTACTCTGTATGA a score=1326.0 s hg17.chr17_random 805816 3 + 2618010 GTT s panTro1.chr19 35014645 3 - 82489036 GTT s rn3.chr10 76677240 3 + 110733352 GTT s canFam1.chr9 26628907 3 - 53642819 GTC a score=0.0 s hg17.chr17_random 805819 8 + 2618010 ATAAGTTA a score=438.0 s hg17.chr17_random 805819 4 + 2618010 ATAA s panTro1.chr19 35014648 4 - 82489036 ATAA s rn3.chr10 76677243 4 + 110733352 CTGA a score=775.0 s hg17.chr17_random 805823 4 + 2618010 GTTA s panTro1.chr19 35014652 4 - 82489036 GTTA s mm5.chr11 86109412 4 + 121648857 AGTA s rn3.chr10 76677247 3 + 110733352 -GTA a score=25402.0 s hg17.chr17_random 805827 73 + 2618010 TATTTCCTTGTGAAAGTATAGTTATCACTTCAGTTCTAACCATGAGATTTATTTATTTAATTCCTTCTCTCTT s panTro1.chr19 35014656 73 - 82489036 TATTTCCTTGTGAAAGTATAGTTATCACTTCAGTTCTAACCATGAGATTTATTTATTTAATTCCTTCTCTCTT s mm5.chr11 86109416 66 + 121648857 CATTTTCTTGTTATAGAATAG-TATCATCTAAGTTCTACCCACCAGATTCCTTTAATT------TCTTCCCTT s rn3.chr10 76677250 61 + 110733352 CATTTTCTTACTAAGGAATAG-TATCATCTAAGCTCTACCTACCAGATTCCTTTAATT-----------TCTT s canFam1.chr9 26628910 67 - 53642819 TATTTGCTTATGAAAAA-----CATCACCTAAATT-TAACCACTACATCTGTTTCTTTAATTCCTTCTCCCTG a score=14324.0 s hg17.chr17_random 805900 54 + 2618010 TCCCAAAATATCTGGTTAAACTCTTGGGCCAAATGTAAGAAGTAAATAATAATT s panTro1.chr19 35014729 54 - 82489036 TCCCAAAATATCTGGTTAAACTCTTGGGCCAAATGTAAGAAGTAAATAATAATT s mm5.chr11 86109482 53 + 121648857 TCATGATGTGTCTAGTCTGACTCGTGAACCAAATAGAGGAAAGAGATATCAA-T s rn3.chr10 76677311 53 + 110733352 TCGT-ATGTATCTAGTCTGACTCATGAACCAAACAGAGGAAATAAATATCAATT a score=0.0 s hg17.chr17_random 805954 22 + 2618010 TAGAATATCTGACTTAATACTA a score=3114.0 s hg17.chr17_random 805954 16 + 2618010 TAGAATATCTGACTTA s panTro1.chr19 35014783 16 - 82489036 TAGAATATCTGACTTA s mm5.chr11 86109535 16 + 121648857 TAAAAAATATGACCTA a score=555.0 s hg17.chr17_random 805970 6 + 2618010 ATACTA s panTro1.chr19 35014799 6 - 82489036 ATACTA a score=2694.0 s hg17.chr17_random 805976 12 + 2618010 AAAGATGATGAC s panTro1.chr19 35014805 12 - 82489036 AAAGATGATGAC s rn3.chr10 76677364 12 + 110733352 AAAAATTATGAC a score=12212.0 s hg17.chr17_random 805988 130 + 2618010 CACATTGACCTTATAATTCTCTTAGAGCCCAGACTGTgaacctgcactccctggaggaatggctgattccaagtgtggggaaaatgtacaagataagcatagaacaccagtttccttattttgctctctc s panTro1.chr19 35014817 130 - 82489036 CACATTGACCTTATAATTCTCTTAGAGCCCAGACTGTgaacctgcactccctggaggaatggctgattccaagtgtggggaaaatgtacaagataagcatagaacaccagtttccttattttgctctttc a score=18159.0 s hg17.chr17_random 806118 109 + 2618010 gtacaacaccagacaatgtgctcatgtcaaaaggactcagaacccaacatgaagatgcacccaGCATTCACTGCACCCAGCATTCAACGAAGGGAAAAAACGAGCACCA s panTro1.chr19 35014947 109 - 82489036 gtacaacactagacaatgtgctcatgtcaaaaggactcagaacccaacatgaagatgcacccaGCATTCACTGCACCCAGCATTCAACGAAGGGAAAAAATGAGCACCA s canFam1.chr9 26628977 93 - 53642819 ATACAACATCAGACTTTGTggtcatgtcaaaagagccagggaaccaacatgaaga----------------agcacccagtatccaaagatgataaaaacaaagcatca a score=29383.0 s hg17.chr17_random 806227 324 + 2618010 ATAAAAATAACTgctaggtgcggtggctcacgcctatcatcccaacactttgggaggcagaggcaggtggattgcttttgagctcaggatttgaagaccagcctggtgaacacggcaaaaccccgtctctaccagaaacacaaaaattagctgggcatggtggtgtacctgtggtcccagctactcaagagggtgaggtgggaggattgctggaggtcgggatgtcaagcctgcagtgggcagcgattataccactgcactacagcttgggtgacagagttaagaccctgcctgaaaacaataaatgaataaataaaaataaaa s panTro1.chr19 35015056 323 - 82489036 ATAAAAATAACTgctaggtgcggtggctcatgcctatcatcccaacactttgggaggcagaggcaggtggattgcttttgagctcaggatttgaagaccagcctggtgaacacggcaaaaccccatctctaccagaaacacaaaaattagctgggcatggtggtgtacctgtggtcccagctactcaagagggtgaggtgggaggattgctggaagtcaggacgtcaagcctgtagtgggcagcgattataccactgcactacagcttgggtgacagag-taagaccctgcctcaaaacaataaatgaataaataaaaataaaa a score=12334.0 s hg17.chr17_random 806551 62 + 2618010 Taaaaataactgcgatgaaaggaaacacaaatatgttaaaacgtgtaagttcataa-tatact s panTro1.chr19 35015379 62 - 82489036 Taaaaataactgcaatgaaatgaaacacaaatgtgttaaaacgtgtaagttcataa-tatact s canFam1.chr9 26629071 63 - 53642819 caaaaattactgcaatggattaaaacacaaatatattcaaaagcataagttcataattatact a score=1830.0 s hg17.chr17_random 806613 10 + 2618010 ---aaaaaagaaa s panTro1.chr19 35015441 10 - 82489036 ---aaaaaagaaa s rn3.chr10 76677560 10 + 110733352 ---AAGAGAGAAA s canFam1.chr9 26629134 10 - 53642819 tttaaaaaaa--- a score=0.0 s hg17.chr17_random 806623 9 + 2618010 aaaacacac a score=-930.0 s hg17.chr17_random 806623 9 + 2618010 aaa--acacac s panTro1.chr19 35015451 11 - 82489036 aaaacacacac s rn3.chr10 76677570 2 + 110733352 AA--------- a score=65812.0 s hg17.chr17_random 806632 171 + 2618010 acacaaagttcattggtcaattttggaagatg-------ctaggaaactaattcattattttgaaaacta------ggaaagaatcaaacatacatcctgccttttctgtatgaactgtaccttgggtaactaactgatcaaagagtttctctttatgaaagaattccagctaacaaagaaaga s panTro1.chr19 35015462 171 - 82489036 acacaaagttcattggtcaattctggaagatg-------ctagggaactaattcattattttgaaaacta------ggaaagaatcaaacatacatcctgcctttcctgtatgaactgtaccttgggtaactaactgatcaaagagtttctctttatgaaagaattccagctaacaaagaaaga s mm5.chr11 86109960 169 + 121648857 TCTTATAATTCATTATTTAATTTTAGAAGATA-------CTAAGGAACTATTTCATTATTTTGAAGAATAT-----TAAAAAAATCATACATTTAGCCTACATTCCTGGTATCAACTATACTTTGGATAACCAAACAACTGATG---TCTGCTTTATGGAAAACTTGTGGCTAATGAAGAATGA s rn3.chr10 76677572 160 + 110733352 --------------------GTATGGAGGATGGGGGAAAAAAGGGAACTATTTCATTATTTTAAAGAATATTAAAAAAAAAGAATCAAACATTTAGCCTACATTCCCGGTATCAACTACACCGTGGGTAACCGAACAACTAATG----TCGCTTTATGGAAAACTTCTGGTTAATAAAGCGTGA s canFam1.chr9 26629144 143 - 53642819 ttacagaattcattggtcaattttggaagatg-------ttaaaaaactaatttattattttgaaaactg------ggaaggaaacaaacatttatcctgcctttcctgtatgaac--------------------aatctaag--tttctttttagggaaaaattc--actaacgaaga---- a score=2311.0 s hg17.chr17_random 806803 25 + 2618010 agaaataacag--ttagaataaaacca s panTro1.chr19 35015633 25 - 82489036 agaaataacag--ttagaataaaacca s mm5.chr11 86110129 23 + 121648857 ACAAGGTAAGG----AGAACACAACTA s canFam1.chr9 26629287 25 - 53642819 attaataatagtattagaataagaa-- a score=1212.0 s hg17.chr17_random 806803 35 + 2618010 agaaataacag--ttagaataaaaccatttcacaaac s canFam1.chr9 26629287 35 - 53642819 attaataatagtattagaataaga--attttgcaaac a score=2305.0 s hg17.chr17_random 806828 10 + 2618010 tttcacaaac s panTro1.chr19 35015658 10 - 82489036 tttcacaaac s canFam1.chr9 26629312 10 - 53642819 ttttgcaaac a score=14209.0 s hg17.chr17_random 806838 57 + 2618010 acctgatgaaACTACAAAAGTAGGCcagagtttctcaacctcagggctactgacatt s panTro1.chr19 35015668 57 - 82489036 acctgatgaaACTATAAAAGTGGGCTACAgtttctcaacctcagggctactgacatt s rn3.chr10 76677732 51 + 110733352 ACATGATGAGAACACAGAA-----CTAGAGTTTCTC-ACCTCAGCACTGCTGACATT s canFam1.chr9 26629322 55 - 53642819 ccctaaC--AATCTTCAAGCTAGGCcagggtttctcattctcagcgctactgatatt a score=91.0 s hg17.chr17_random 806895 1 + 2618010 t s canFam1.chr9 26629377 1 - 53642819 t a score=91.0 s hg17.chr17_random 806895 1 + 2618010 t s panTro1.chr19 35015725 1 - 82489036 t a score=14667.0 s hg17.chr17_random 806896 49 + 2618010 taggcctattaatactttgcgttagggggctg--tgctgtg-------------------------ctgactctta s panTro1.chr19 35015726 49 - 82489036 taggcctattaatactttgcgttagggggctg--tgctatg-------------------------ctgactctta s mm5.chr11 86110407 53 + 121648857 TGGGCTTGATAATTCTTCAAAGTAGAGAGCTGCCTGCCATGTA-----------------------CTGGCACTTA s rn3.chr10 76678013 49 + 110733352 TGGGCTTGATAATTCTTCAGGGTAGAGAACTG--CCATGTG-------------------------CTGGCCCTCA s canFam1.chr9 26629378 73 - 53642819 cgggcttggtaactctt-gttgtaggggccta--tcctgtgtaacagaggatgtatatcagcatctctggcctcta a score=20917.0 s hg17.chr17_random 806945 147 + 2618010 -cccctgaaggtacctatagcat-tccctctcccaagctgtga----cagtgtgtctccagacattgccaaatt-accctggTAGTGAAATGCTGAC--ACAGG-------CAGTGACCACTAACATCACTAAAAAAACACACATACGCACACACAAGTACAC s panTro1.chr19 35015775 151 - 82489036 -cccctgaaggtacctatagcat-tccctcccccaacctgtgacaatcagtgtgtctccagacattgccaaatt-accctggTAGTGAAATGCTGAC--ACAGG-------CAGTGACCACTAACATAACTAAAAAAACACACATACACACACACAACTACAC s mm5.chr11 86110460 140 + 121648857 --CGCTGTAGGTACTAGGAGCAGAGCCCTCCTGCAAC-----ACAACCAAAATACTTCTAGACTTTGGT-------CCCTGGTTAAGAACCATTGACATACAGGGATTCATTAATGACTACTAACTGCTCTAAAGGAATACAACTATAC---------TGTAA s canFam1.chr9 26629451 143 - 53642819 cccactgcaa--accagtagcat-ctcctcct-caagtggtga----taacttgtctccaaaccttaccaaatTGACCTTAGCTAAGAATCACCAat--gtaggcaatgatcaatgaccactaacatcactaaaaaaaaatacaaatacatac---------- a score=32472.0 s hg17.chr17_random 807092 128 + 2618010 ATTATGCCTCCTGATCAAAGCATATGCGATACTGAGAGT-GTaatctgaatcagatcaaccacctaaatttaactaccagtttttgg----------aaatttggggaacagatga----acatggtcaat-gacactctgggg s panTro1.chr19 35015926 129 - 82489036 ATTATGCCTCCTGATCAAAGCATACGCGATACTGAGAGTGGTaatctgaatcagatcaaccacctaaatttaaataccagtttttgg----------aaatttggggaacagatga----acatggtcaat-gaaactctgggg s mm5.chr11 86110600 99 + 121648857 GATAAGCTTCCTTGTCAAAGCATAT--AGCATCAAGAAG-TCCATCTGTATC---CCAAGTTCCTTAATTT---------------------------------GGAAAGAGAT-A----ACATAATAAAT-GATGCAGTGGGG s rn3.chr10 76678309 101 + 110733352 GATAAGCTTCCTTGTCAGAGTATAC--AGCACCAGGAGT-TCCATCTGTATC---CCGAGTTCCATAATTT---------------------------------GGAAACAGATTA----ACATAATAAGTGGACACAATGGGG s canFam1.chr9 26629594 140 - 53642819 attatgcctcctgaccaaaatatat--aacatcaaaagt-tttatctcaatcagattaattctctaaatctaaatactactatctaaatcaaaatctaaatacagggaactaattacaccatatggtcaat-gacactatgggg a score=14167.0 s hg17.chr17_random 807220 27 + 2618010 ataatatcagc-aaaatcaaaatttgag- s panTro1.chr19 35016055 27 - 82489036 ataatatcagc-aaaatcagaatttgag- s mm5.chr11 86110699 28 + 121648857 ATAAAATGAGCAAAAATTAAAATGTAAG- s rn3.chr10 76678410 27 + 110733352 ATAAAATGAGC-AAAATTAAAACGTAAG- s canFam1.chr9 26629940 28 - 53642819 ATAAaatcagc-aaaatcaagatgttagg a score=11.0 s hg17.chr17_random 807247 4 + 2618010 aatt s panTro1.chr19 35016082 4 - 82489036 aatt s rn3.chr10 76678438 3 + 110733352 AAT- s canFam1.chr9 26629968 4 - 53642819 aacc a score=19826.0 s hg17.chr17_random 807251 139 + 2618010 ctacaggacaaatgacccc---gtttcttcagtaaatCAC-----------------AAGGGGAATCTATAAAGGAAAAGAGACCTAAGAGACATAGTAACCAAACTACATACAGACCTTGATT---------------------AACAGGAG----GAAAAAAAAGAATGGAACAACAACAAC s panTro1.chr19 35016086 153 - 82489036 ctacaggacaaatgaccct---gtttcttcaataaatcac-----------------gaggggaatctataaatgaaaagagacctaAGAGACATAGTAACCAAACTACATACAGACCTTGATTAAATCCTT----------ACAAACAGGAG-AAAAAAAAAAAAGAATGGAACAACAACAAC s canFam1.chr9 26629972 180 - 53642819 ctacaggacaga--accctctagtttcttcagttaagtactcaggagaagaattgagagggggtatctacagatggaaagagacataaaaaatacaataaacaaactgtatac--accttgactgaatccttactgaaacaaaCCAACAGGGGGAAAAAGCAAACAAAGTGGGAAAATGTCAGC a score=20054.0 s hg17.chr17_random 807390 220 + 2618010 AAAAAAATTAGGTGgggcaacacagggagacctcatctctagaaaaattcaaaaaattggatgtggtgatgcacccctgtggtcccagctatatgggaggatcccttgagcctgggaagctgaggctgccatgagccactatcatgccactgcactccagcctgggcaacagagaaagaccctatctcaaaaaaaaaagagaaaaaaaaaaaa---------CTGGGGA s panTro1.chr19 35016239 229 - 82489036 AAAAAAATTAGGTGgggcaacacagggagacctcatctctagaaaaattcaaaaaattggatgtggtgatgcacccctgtggtcccagctatatgggaggatcccttgagcctgggaagctgaggctgccatgagccactaacatgccactgcactccagcctgggcaacagagaaagaccctatctcaaaaaaaaaagagaaaaaaaaaaaaaaaaaAAACCTGGGGA a score=691.0 s hg17.chr17_random 807610 4 + 2618010 AACT s panTro1.chr19 35016468 4 - 82489036 AACT s canFam1.chr9 26630178 4 - 53642819 AAAT a score=4017.0 s hg17.chr17_random 807614 14 + 2618010 GTCAACTTCTTAGG s panTro1.chr19 35016472 14 - 82489036 GTCAACTTCTTAGG s mm5.chr11 86111149 14 + 121648857 GTCAACCATATAAC s canFam1.chr9 26630182 14 - 53642819 GTCAGCTTTTTAGT a score=2392.0 s hg17.chr17_random 807628 19 + 2618010 TGTGATGATGGGATGACAG s panTro1.chr19 35016486 19 - 82489036 TGTGATGATGGGATGACAG s mm5.chr11 86111163 15 + 121648857 TGTGAT----GTGTTAAGC s rn3.chr10 76678866 15 + 110733352 TGTGAT----ATGTTACAC s canFam1.chr9 26630196 18 - 53642819 TGTGACAAT-AGCTAGCAG a score=10497.0 s hg17.chr17_random 807647 14 + 2618010 TTATGTTTAAAGAA s panTro1.chr19 35016505 14 - 82489036 TTATGTTTAAAGAA s mm5.chr11 86111178 14 + 121648857 TTATGTTTAAAAAA s rn3.chr10 76678881 14 + 110733352 TTGTGTTTAAAAAA s canFam1.chr9 26630442 14 - 53642819 TTATATTTAAACAA a score=17066.0 s hg17.chr17_random 807661 49 + 2618010 GATGATCTAATTATTTTT-AAGCTGGGCAGTAGGTGTATGA----CAGTTCTCC s panTro1.chr19 35016519 49 - 82489036 GATGATCTAATTATTTTT-AAGCTGGGCAGGAGGTGTATGA----CAGTTCTCC s mm5.chr11 86111387 52 + 121648857 AATGACCTGATTATTTCTGAAATTAGGAAGTAGGTATCTGA--GCTAATTATCC s rn3.chr10 76678895 51 + 110733352 GATGACCTGATCATCTCTGAAGTTCAGAAGTAGGTATTTAG---TTAATTATCC s canFam1.chr9 26630456 46 - 53642819 GATGACCTGAC--------AAGCTGGACAGTTGATACATAAGGGTTAATTAGCC a score=5664.0 s hg17.chr17_random 807710 17 + 2618010 TCCTTACAATTGTTTGT s panTro1.chr19 35016568 17 - 82489036 TCCTTACAATTGTTTGT s mm5.chr11 86111439 17 + 121648857 TCCCTATACCTGTATAC s canFam1.chr9 26630502 17 - 53642819 TCCTTACAATTATATAT a score=874.0 s hg17.chr17_random 807727 13 + 2618010 TG----TTTTTTAAAGT s panTro1.chr19 35016585 13 - 82489036 TG----TTTTTCAAAGT s mm5.chr11 86111456 14 + 121648857 CG---ACGTCTTAAGGT s canFam1.chr9 26630705 17 - 53642819 TGTAAAAATTCTAAAGC a score=998.0 s hg17.chr17_random 807740 5 + 2618010 GGGTC s panTro1.chr19 35016598 5 - 82489036 GGGTC s mm5.chr11 86111665 5 + 121648857 TGTTC s canFam1.chr9 26630722 5 - 53642819 AAGTC a score=7033.0 s hg17.chr17_random 807745 20 + 2618010 ACATTATGGGGCATGACCAA s panTro1.chr19 35016603 20 - 82489036 ACATTATGCTCCATGACCAA s mm5.chr11 86111670 20 + 121648857 ATCTTATATTCTGTGATAAA s rn3.chr10 76679184 20 + 110733352 ATCATGTGCTCTGTAATCAA s canFam1.chr9 26630727 20 - 53642819 ACCTTGTACTCCAGGACCAA a score=0.0 s hg17.chr17_random 807765 12 + 2618010 AAAATAATCACC a score=4172.0 s hg17.chr17_random 807765 12 + 2618010 AAAATAATCACC s panTro1.chr19 35016623 12 - 82489036 AAAATAATCACC s mm5.chr11 86111690 12 + 121648857 ATAATAATTAGT s rn3.chr10 76679204 12 + 110733352 ATAATAATCAGC a score=180.0 s hg17.chr17_random 807777 2 + 2618010 AT s panTro1.chr19 35016635 2 - 82489036 AT s mm5.chr11 86111702 2 + 121648857 CT s rn3.chr10 76679553 2 + 110733352 AG s canFam1.chr9 26630747 2 - 53642819 AT a score=23293.0 s hg17.chr17_random 807779 49 + 2618010 CATCATCCTCCTCCTTCTCCACCTACAGCCCAAGGAATGGAAAAAGAAA s panTro1.chr19 35016637 49 - 82489036 CACCATCCTCCTCCTTTTCCACCTACAGCCCAAGGAATGGAAAAAGAAA s mm5.chr11 86112023 48 + 121648857 CCCCGTTCTCCTCTTCCTTCACCTACATCCCCCAAAATAGAAAAAGCA- s rn3.chr10 76679555 48 + 110733352 CCCCATTCTCCTCTTCCTTCACCTATATCTCCCCAAATAAAGAGAACA- s canFam1.chr9 26630749 49 - 53642819 TATCATTTTCCTCCTCCTCCACCTTCATCCCAAGAAACAGAAAAACAAA a score=66429.0 s hg17.chr17_random 807828 175 + 2618010 CTGTGTTTTCTCAGATTCTGAGGTGGCAGAAAGACAA----TAACACACTAACTCATTTACTCATAAACA------------TATtgttatggattgaatcgtgtcccttactcaccccccagaaaatttcgtatgttgaaactctaacctctagttcctcagaatgtgaccttatttgga-aagggttatt s panTro1.chr19 35016686 175 - 82489036 CTGTGTTTTCTCAGATTCTGAGGTGGTAGAAAGACAA----TAACACACTAACTCATTTACTCATAAACA------------TATtgttatgggttgaatcgtgtgccttacccaccccccagaaaatttcgtatgttgaaactctaacctctagttcctcagaatgtgaccttatttgga-aagggttatt s mm5.chr11 86112071 157 + 121648857 ---TATGTCCTCAGATTCTGAGGTAAAAGAAGTTAAA----TAA-----GAATTATTTTAACCATAAGC--------------ATTTTTATAGACTGACCTATGTTCCCT--TGACCTCACA------TTCATGTGTTGACATTCACACTCCTGCTTCCTCAGAAAGTGATCTTATTTGAA-AAGAGTCACT s rn3.chr10 76679603 159 + 110733352 ---TATTTTCTGAGGTCCTGAGGTAAAAGACATAAGT----TAA-ATAAGCATTATTTTAACCATAAGC--------------ATTTTTATAGACTGAACTATGTTCTCT--TGACCTCACA------TTC--ATGTTGACATTCAAACTCCTGGTTCCTCAGAAAGTGATCTTACTTGGC-AAGGGTCACA s canFam1.chr9 26631571 180 - 53642819 CTGTATTTTCTCAAATTCTGAGGTCGAAGAAAGACAAGAACTAACACACCAACTAATTTACTCATAAACATATTGTTATGCTTATtgttatggtttgagttgtgtccccc--tca----aca------ttcatgtgttgaagctctaactccaagtaccttagaataaaacctaatttgaatgagggtcact a score=20372.0 s hg17.chr17_random 808003 73 + 2618010 gcagatgtaattagtgaagatgaggtcctactggagtagagaggaaccctaatccaatatgcctggtatcctt s panTro1.chr19 35016861 73 - 82489036 gcagatgtaatgagtgaagatcaggtcctactggagtagagaggagccctaatccaatatgcctggtatcctt s mm5.chr11 86112228 58 + 121648857 GCAGGTGTCATTAATATATACTA--TCATACAGGAGAACA-------------CCACTATACCTGCTTTCTCT s rn3.chr10 76679762 52 + 110733352 GCAGATGTCAC------AGACTA--TTATACAGGAGTACA-------------CCACTATACCTGGTTTCTCT s canFam1.chr9 26631951 72 - 53642819 gcagatttaattagttaagatgaggtcattctagagtagggaaga-tcctaatctagtatgactggtgtcctg a score=61833.0 s hg17.chr17_random 808076 356 + 2618010 ataaaaaggggaaatttggccacagatacgcacacaggtagaacaccatgtgaacatgaaggcagagatccaggtgatgcacctacaagccaaagtatgccaaagatgaccagcaaaccaccagaagccaggggagaggca---tggaacataaggtttctcacagttgt-cgaagaaaccaactct---aacaacgtgatctagaacttctagtctccagatctatgagataataaatttctgttgtctaagccacccagtttgtg-gtactttgttgcagcaagcctagcaaactaatgcaCACATATTCTATATTTTGAA-GAAAAAATTCCCAGAGAATCATATTTAAAAT--GGTTAAATTA s panTro1.chr19 35016934 357 - 82489036 agaaaaaggggaaatttggccacagatatgcacacaggtagaacaccatgtgaacatgaaggcagagatccgggtgatgcacctacaagccaaagaatgacaaagattaccagcaaaccaccagaagccaggggagaggca---tggaacatacagtttctcacagtagt-caaagaaaccaactct---aacaatgtgatctagaacttctagtctccagatctatgagataataaatttctgttgtctaagccacccggtttgtgagtactttgttgcagcaagcctagcaaacgaatgcaCACATATTCTGTATTTTGAA-GAAAAAATTCCCAGAGAATCATATTTAAAAT--GGTTAAATTA s canFam1.chr9 26632023 347 - 53642819 ataaaatgggaaaatatggacgcagatctgcacaaaaggaaa-----atgcaaacataaaagcagagat-caggtgatgt--------gccacggaatgccaaagattggtagcaaacctccagaagctaggagaggcacagagtggaacagaagctatctcacaatcttcctaatgaactaagcctgtcaacaccttgaccttggacatctagtctccagaatt-----ataacgaactactgctgtgtaagccacctagtttgtg-gtactttgttacagcaaccctagcaaactaatacaCATATATGATGTATTTTGAAGGAAAAAATTCCCAGAAAATCAAATTAAAAATAGGGTTGAATCA a score=1774.0 s hg17.chr17_random 808432 19 + 2618010 AGCAAAATAAAACAAACCA s panTro1.chr19 35017291 19 - 82489036 AGCAAAATAAAACAAACCA a score=13727.0 s hg17.chr17_random 808451 72 + 2618010 AAAAAAGAAAAGTCCCAACTACCTGAAATATTTAATTGTCTTAGGAAACTGACTTAAAAATATCTAATACAg s panTro1.chr19 35017310 72 - 82489036 AAAAAAGAAAAGTCCCAACCACCTGAAATATTTAATTGTCTTAGGAAACTGACTTAAAAATATCTAATACAg s canFam1.chr9 26632664 68 - 53642819 AAAGTAAAAAAGTTTCAGTTACTTGAAATAT----TTGTCTAAGGCAACCAACTTAAAAATAGGTAATACAG a score=19239.0 s hg17.chr17_random 808523 309 + 2618010 gccgggcacggtggctcacgcctgtaatcccagaactttgggaggccgaggtgggtggatcacaaggtcaggagttcaagaccagcctggccaagatgatgaaatcctgtgtctactaaaaatacaaaa-atttgctgggcatggtggcaggtgtctgtaatcccagctactcaggaggcagaggca-gagatttgcttgaacccaggaggtggaggctgcag--tgatccgagatcacaccactgcactccagcctgggggacagatcaagactccatctcaaaaataaaaaaataaaaataaagaagaaaA s panTro1.chr19 35017382 311 - 82489036 gccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgagcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaacattagccgggcgtagtggcggacgcctgtagtcccagctattccggaggctgacgcaggagaatggcgtgaacccgggaggcggagcttccagtttg--ccgagattgcgccactgcactccagcctgggcgacagagccagattccgtttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa a score=86434.0 s hg17.chr17_random 810375 1075 + 2618010 ctcaaattgtacagaaagaaaaTTTATTAATGTTAAAAAATGTCAATATTCATAGATACACATATATGTGGGGGCAGGTAGAAAGGGAGGGACACAGAGACAAAGAAAATATGGCAAAATGGTAACACCTGGTGATCACTGAACTATTCTTGCAACTC--TGAAAAG-TTTAAAAAATTTCAAAGGTATATTGTTTTTGAACTGCTCGGGAGGTTTAAATTTTTGAATTTTTAAAATAAGCAATCAATTGTGAGGAAGTCTGAGAAGCCACAGACTTAAGAGATAAGATGAAAAATAAGGAAAGTAGAATCACAGTAATAAGAGGAACAGAGTTTCAAAATGCTGTGGTCAGTCAGTAGCTTCAATGCAAAAGAAAGTTAAATTAAGGACCAACTCAGTAAAGACAACTGGATTCAGCAACTGGGAAGTCAGTGATGACCTAGGGTACAGGAGCTGCATTGAAATAGTAGAGTTGGGCCACG---CgtggcccacatctataatccagcagtttgggaggccgaggtaggtggacctcttgaggccaggaattcaagaccagcctagccaacatggtgaaaccccatctctactaaaaatacaaaaattaacccgagacagtggcgcacccctgtaaccccagctactcaggggcctgaggcatgagaactgcttgaacctggaaggcagaggctgcagtgagctgagatagggccactgcacttcagcctgagtgacaggggaagactctgtctaaaaaacaaaaaaCAggcctggcgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgtggtggcaggcacctgtggtcccagctcctccggaggctgaggcaggagaatgacatgaacccgggaggtggaggttgcagtgagctgagattacgccactgcactccagcctgcgtgacaaagccagactccctctcaaaaaaaaaaaaaaaaaGACGTAAACTGGG s panTro1.chr19 61606835 1072 - 82489036 CTCAAATTGTACAGCAAGAAAATTTATTAAAGTTAAAAAA-GTGAATATTCATAGATATACATATATGTGGGTGCAGGTAGAAAGGGAGGGACACACAGACAAAGAAAATATGGCAAAATGGTATCAACTGGTGATCACCGACCTATCCTTGGAACTCTTTGAAAAGTTTTTAAAAATTGCAAAAGTATATTATTTTTGAACTGCTCAGGAGGTTTAAATTTTTGAATTTTTAAAATAAGCAATCAATTgtgaggaagtctgagaagccacagac-taagagataagatgaaaaacaaggaaagtagaatcacagtaatgaaaggaatagagtttcagaatgctgtg----gtcagtagcttcaatgcaaaagaaagttaaattaaggatgaactcagtaaagacaactggattcagcaactgggaagtcagtgatgacctagggtacaggagcttcattgaaatagtagagTTGGGCCACGGCATgtggcccacacctat-atccagcagtttgggaagccgaggtaggtggatctcttgaggccaggaactcaagaccagcctagccaacgtggtgaaaccccatctctactaaaaatacaaaaattaaccagatatagtggcacgcccctgtaatcccagctactcagggagctgaggcatgagaactgcttgaacctggaaggcagaggctgcagtgagccgagacagggccactgcactccagcctgggtgacagggcaaga--ctgtctaaaaaccaaaaaaTAGCccaggcgtggtggctcatgcctgtaatctcagcactttgggaggccgaggcagttggatcacaacgtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcatggtggcgggcgcctgtggtcccagctcctcgggaggctgaggcaggagaatggcatgaacccgggaggtggagattgcagtgagctgagatcacgccactgcactccagcctgggcaacaaagcaaaaccccctctcaaaataaaaaaaaaaaGGAAGTAAACTGGG a score=8976.0 s hg17.chr17_random 811450 68 + 2618010 TATGTGCCTTTAGAGGTGGTGCACATTTTTAGCATTATAAATGAATATAAATGAGTGGCAACTGTTAC s panTro1.chr19 61607907 68 - 82489036 TATCTGCCTTTAGAGGTGTTGTACGTTTTCACCATTATAAATGAATACAGATGAGTGGACATAGTTAC s canFam1.chr9 15523246 63 - 53642819 TATGTGTGTTT-GTGGTGGTATGCATTTTTAGTATGATAAATTG----AGATGAGTGGCAATATTTAC a score=15731.0 s hg17.chr17_random 811518 122 + 2618010 TTTGGTCCACAGATTTTTGGTATCT----TAACTAGTTTTTGG-TCTCTTCCACTAAAGGCATTG-CCTGTTGAACC------TTgttaggaatgtaagtactgaa-ggcaaac--tgcctgggtttgaattttgtt s panTro1.chr19 61607975 121 - 82489036 TTTGGTCCATAGATTTTTTGTATCT----TAAC---TTTTTGGATCTCTTCCACTAAATGGACTGCCCTGTTGAACT------TTCTCTGGAATGTAAGTACTGAATGGC-AAC--TGCCTGGGTTTGAATTTTGTT s rn3.chr10 63111807 112 + 110733352 TTTGGCCTACAGATTTTTTTTTTCTGTTGTAACCGGTTCTTGA-TCTC-TACAGTAGAGTGAGTG-ATTGTAGGAAC---------------ATATTGGTACTGAA-GACAAA------GTGGATTTGAATTTTGAC s canFam1.chr9 15523309 130 - 53642819 TTGAGTATAAGCATTTTTGGTGTCA----TGGTGGACTGTGGA-TCTGAGCCACTCAAATGATTG-GCTGTTGagcatagtagtggttaggaatgtgagcactgga-ggcaggctgtgtctaggtttgaatTTTTTT a score=236.0 s hg17.chr17_random 811640 17 + 2618010 ctgtcccttgcACCCTG s panTro1.chr19 61608096 17 - 82489036 CTGTCCCTTTCACCCTG s rn3.chr10 63111919 16 + 110733352 TTTTGTCTTGGAATTG- a score=2609.0 s hg17.chr17_random 811657 14 + 2618010 cctcgtttcaaatc s panTro1.chr19_random 7889599 14 + 57627672 cctggcttcaaatc s rn3.chr10 63111935 14 + 110733352 CTTTGGTTCAAATC a score=1119.0 s hg17.chr17_random 811671 5 + 2618010 c--tagc s panTro1.chr19_random 7889613 5 + 57627672 c--tagc s rn3.chr10 63111949 7 + 110733352 CTGTAAC s canFam1.chr9 15523821 5 - 53642819 c--TAGC a score=15684.0 s hg17.chr17_random 811676 73 + 2618010 -----tctgcttattacgttcttttaaggggatgacctttgagcaaat-----------------gtcttagctt---------------------------ctgttttccccagtaaatgg s panTro1.chr19_random 7889618 73 + 57627672 -----tctgcttattaagttcttttaaggggatgatctttgagcaaat-----------------gtcttagctt---------------------------ctGCTTTCCCAAGTAAATGG s mm5.chr11 75367411 65 + 121648857 -----TTTTTTTTTTAAGTTCTTGCAAGTTGATGGCCTTTGGACAAAT-----------------GTTCTAGCTT-----------------------------------TAAAATAAATAG s rn3.chr10 63112007 60 + 110733352 -----TGTTTTTTTGAAGTTCTTATAAGTTGATGGCCTTTGGGCAAAT-----------------GTTCTATCTT----------------------------------------TAAATGA s canFam1.chr9 15523826 122 - 53642819 TTTTTAATTTTTATTCCATCCCTTAGAAGCTGTGACCTTAGGCTTTATAGCCTACATTGGTTCAGATCCTAGCTCTCCTCCTTTTGGCTAAATACTATATAATCGTTTCCCCATGTAAATAG a score=2163.0 s hg17.chr17_random 811749 5 + 2618010 acaca s panTro1.chr19_random 7889691 5 + 57627672 ACACA s rn3.chr10 63112067 5 + 110733352 ACACA s canFam1.chr9 15523948 5 - 53642819 AGACA a score=0.0 s hg17.chr17_random 811754 1 + 2618010 a a score=91.0 s hg17.chr17_random 811754 1 + 2618010 a s panTro1.chr19_random 7889696 1 + 57627672 A a score=546.0 s hg17.chr17_random 811755 2 + 2618010 ta s panTro1.chr19_random 7889697 2 + 57627672 TA s canFam1.chr9 15523953 2 - 53642819 TA a score=5982.0 s hg17.chr17_random 811757 120 + 2618010 gttgctactttgtgaaag------attcatgtaaTTGACCAGCATTTACCAAGTAGCATCAGTGTTTAGTTTCAGTCATTGGTGATTC-TGCAGTTGGACTGTGAGGGGGTATTGGGGTGGGGGGTG-- s panTro1.chr19_random 7889699 110 + 57627672 GTTGCTACTTTGTGAAAG------ATTCATGTAATTGACCA----------AGTAGCATCAGTGTTCAGTTTCAGTCATTGGTGATTCATGCAGTTGGACTGTGATGGGGTGTTGGGGTGGGGG-TG-- s mm5.chr11 75367879 70 + 121648857 GTTGGTACCTTACAATGGGAATTAATTCATGTAAGTG----------------------------------------CTTGGTTAGTC-TTTAGGTGAACTGTG---------------GGGGG-TT-- s rn3.chr10 63112485 85 + 110733352 GTTGGTACCTTATAATGGGAATTAATTCATGTAAGTGCCTC-----------------ACACTCTTGAGT-------CCAGGTGATGC-TTTAGGTGAACTGT----------------GGGGG-TT-- s canFam1.chr9 15523955 108 - 53642819 GTTTCTACCTTGTTAAATATGCTAAT-----TAAGTATGCAGCACTTGTAAATAGCAATCAGTATT-----------ATACTCAGTTC-TGTAGCTAAACCATG---AGGTTGTTGGGTTGGTG-TGTT a score=-6540.0 s hg17.chr17_random 811877 123 + 2618010 GTGTGTGTGT--------------AGCACTTAATTGCAGGCA-GGAAGGAAAAGATACTTTTGATAACCGACAGGCAGCTTTTCTCTGCTTTTGT----GTCAAA----AGGGAGGAAG--------------------------------------------------------------------GGAGTTTGGAGAGGGAA-ATGAATTCTC s panTro1.chr19_random 7889809 125 + 57627672 GTGTGTGTGTG------------TAGCACTTAATTGCACGCA-GGAAGGAAAAGATACTTTTGATGACCGAGAGGCAGCTTTTCTCTGCTTTTGT----GTCAAA----AGGGAGGAAG--------------------------------------------------------------------GGAGTTTGGAGAGGGAA-ATGAATTCTG s mm5.chr11 75367949 91 + 121648857 GTGTATGCTT--------------------TAA----------------AGAAGAGGCTTTCTATA-------------CTCTTACCAGTTTTCT----ATCAACTTTTAAGGACTAGGTCT----------------------------------------------------------------AAGGATTTGGAGACATAC-ATG------C s rn3.chr10 63112570 93 + 110733352 GTGTGAGCTT--------------------TAA-------------GGAAGAAGAGGGTTTCCATA--CTTGTAACAGTTTTCTGTCAACTTAAG----GTT-------AAGGAGTAAG----------------------------------------------------------------------AATTTGGAGATATAACATG------A s canFam1.chr9 15524397 208 - 53642819 gtgtgtgtgtAGGGGGTTGGTTTTGGTTTTTGTTTTTTAGCATGTAGAAGGAAGATAATGTC--TAACCTGGAGACAGCTTTTCTCTGCTTTTTTTAAAATCAAG----AGCAGGGGAGATTCAGCATTTTTTAAatttatttatttatttatttatttatttatttatttatAAAAATTTTTAAAAAAGATTTAGATAGAGAT-GTGTATTCTG a score=1449.0 s hg17.chr17_random 812000 20 + 2618010 ------TGTAACACTAAGCTCTCTTC s panTro1.chr19_random 7889934 20 + 57627672 ------TTCAGTACTAAGCTCTCTTC s mm5.chr11 75368040 16 + 121648857 ------TTTAAGACTTGGTTCT---- s rn3.chr10 63112663 20 + 110733352 ------TTTAAGACTAGGTTCTTCTC s canFam1.chr9 15524605 18 - 53642819 ------TTTA--CTCTGGCTCTCTTC s danRer1.chrNA 195171587 22 - 390413307 TGTTATTTTG--AGCAGTTTCTTT-- a score=-3354.0 s hg17.chr17_random 812020 30 + 2618010 CTCAAAACCAGA-GGTAGATAGAATGTGTAA------- s panTro1.chr19_random 7889954 30 + 57627672 CTCAAAATCAGA-GGTACATAGAATGTGTAA------- s mm5.chr11 75368056 24 + 121648857 -------TCAGATATTATATTTAGAATATAA------- s rn3.chr10 63112883 28 + 110733352 CTAAAGATTAGA-CTCAGGTGGAA--TATAA------- s canFam1.chr9 15524623 26 - 53642819 CTCAAAACCAGTGGGCAAATA-----TGTCG------- s danRer1.chrNA 195171609 37 - 390413307 CTTAACCTGAAA-TGTGATCTGTGTGTATATGACAGCA a score=-14256.0 s hg17.chr17_random 812050 23 + 2618010 TAATT--TACAGAATTTCTAGACTT s panTro1.chr19_random 7889984 23 + 57627672 TAACT--TACAGAATTTCTAGACTT s mm5.chr11 75368080 8 + 121648857 TAA----------------AGACT- s rn3.chr10 63112911 11 + 110733352 TTG-------------CCTAAGTT- s canFam1.chr9 15524649 12 - 53642819 TAA-------------TTCATGTTA s fr1.chrUn 102748365 23 + 349519338 TGATC--CTCAGGATCTCTAATCTT s danRer1.chrNA 195171646 23 - 390413307 TAATTACTCTGCCATATCTCCTC-- a score=1322.0 s hg17.chr17_random 812073 10 + 2618010 CAACGATCTG s panTro1.chr19_random 7890007 10 + 57627672 CAACAATCTG s mm5.chr11 75368088 4 + 121648857 ------TTTG s rn3.chr10 63112922 6 + 110733352 ----AATCTG s canFam1.chr9 15524661 10 - 53642819 CAATTAAGTA s danRer1.chrNA 195171669 10 - 390413307 TTACATTCTG a score=0.0 s hg17.chr17_random 812083 26 + 2618010 attttttaaatttatttttatttttt a score=-653.0 s hg17.chr17_random 812083 26 + 2618010 a--ttttttaaatttatttttatttttt s panTro1.chr19_random 7890017 28 + 57627672 AATGTTTTAAAATTCATTTTTATTTTTT s mm5.chr11 75368092 26 + 121648857 A--ATTGCCAAAGTTAATTGGATGTTTT s rn3.chr10 63112928 7 + 110733352 G---------------------TGTTTT s canFam1.chr9 15524671 26 - 53642819 A--ACAAACAATTTTTTACTTTTTTTTT a score=135028.0 s hg17.chr17_random 812109 97 + 2618010 C-------AGGTTGAGACTGAGCTAAAGTTAATCTGTGGCGACGTTCTGGATGTACTGGACAAAGACCTCATTCCAGCAGCTACAACTGGCAAGTCCAAGGTTT s panTro1.chr19_random 7890045 97 + 57627672 C-------AGGTTGAGACTGAGCTAAAGTTAATCTGTGGTGACATTCTGAATGTACTGGACAAACACCTTATTCCAGCAGCTAACACTGGCAAGTCCAAGGTTT s mm5.chr11 75368118 104 + 121648857 CCCTCCCTAGGTTGAAACTGAGCTCAAGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAACACCTCATTCCAGCAGCTAACACTGGCGAGTCCAAGGTTT s rn3.chr10 63112935 104 + 110733352 CCCTCCCTAGGTTGAAACTGAGCTCAAGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAGCACCTCATTCCAGCAGCTAACACTGGCGAGTCCAAGGTTT s canFam1.chr9 15524697 97 - 53642819 C-------AGGTTGAGACTGAGCTAAAGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAACACCTCATTCCAGCAGCTAACACTGGCGAGTCCAAGGTTT s fr1.chrUn 102748395 97 + 349519338 -------CAGATTGAAAACGAGCTGAAAACGATCTGCAACGATATTCTGGTTGTACTGGACAAGCACCTGATCCCCACTGCATTAATGGGAGAGTCCAAGGTTT s danRer1.chrNA 195171679 97 - 390413307 -------CAGGTTGAGAATGAGCTGAAATCTATTTGTAACGACATACTGGATGTACTGGACAAACACCTCATTCCTGCAGCAAACACCGGAGAATCCAAAGTTT a score=33300.0 s hg17.chr17_random 812206 28 + 2618010 TCTATCATGAAATGTAGGT-TCTATACTA s panTro1.chr19 46020692 28 - 82489036 TCTATTATGAAATGTAGGT-TCTATACTA s mm5.chr11 75368222 28 + 121648857 TCTATTATAAAATGTAGGT-TCTATACTA s rn3.chr10 63113039 28 + 110733352 TCTATTATAAAATGTAGGT-CCTATACTA s canFam1.chr9 15524794 28 - 53642819 TCTATTATAAAATGTAGGT-TCTATACTA s fr1.chrUn 102748492 28 + 349519338 TCTACTACAAGATGTAAGT-TTCTGCCCA s danRer1.chrNA 195171776 24 - 390413307 TCTACTACAAAATGTAGGTGTCTG----- a score=-9865.0 s hg17.chr17_random 812234 51 + 2618010 ACAAT-TAACAAGTGTACTTCAATAAATTTAAACATTC---------TCAGGAATAGTTGA s panTro1.chrUn_random 143959882 51 + 240967748 AAAAT-TAACAAGTGTACTTCAATAATTTTAAACACGC---------TCAGGAATAATTGG s rn3.chr10 63113073 61 + 110733352 AAAATGTAAGATGTAAAGTTGTAAAGATGTAGATTTTCAACTTTTATTTAAAAATAGTTGA s canFam1.chr9 15524822 45 - 53642819 GAAGG-GAAAATGTCAGATT----AAATGTTAGCCCCC---------TTAGAATTATCA-- s fr1.chrUn 102748520 41 + 349519338 GGAGA-TGAGGAGGATGCTCCTCT----------CTGC---------TCAACATTAACTGC s danRer1.chrNA 195171800 48 - 390413307 -ACAA-TTTCAAGTCT--TTCTAGGTCTTTCAGAACAT---------TTTGGACTGAGTTA a score=3091.0 s hg17.chr17_random 812285 10 + 2618010 CTTTGTTTCT s panTro1.chrUn_random 143959933 10 + 240967748 CTTTGTTTCT s canFam1.chr9 15524867 10 - 53642819 CTTTTTTTTT s fr1.chrUn 102748570 9 + 349519338 -ATTCTTTAT s danRer1.chrNA 195171848 10 - 390413307 CATGTGTTCT a score=266.0 s hg17.chr17_random 812295 5 + 2618010 -TTTTT s panTro1.chrUn_random 143959943 5 + 240967748 -TTTTT s fr1.chrUn 102748580 5 + 349519338 -TTTGT s danRer1.chrNA 195171858 5 - 390413307 GTTTG- a score=6406.0 s hg17.chr17_random 812300 78 + 2618010 TCTTAGAC-ATTTCATATT--------ATTTTCCTTATTAAATATAACCAAAAAT-----CCCACAGAAA-------TTAACTGAGGAGCCTCTAAATA s panTro1.chrUn_random 143959948 78 + 240967748 TCTTAGCT-ATTTCCTATT--------ATTTTCCTTATTAAATATAACAAAAAAT-----CCCACAGAAA-------TTAACTGAGGAGCCTCTAAATA s danRer1.chrNA 195171863 99 - 390413307 TTTTATATGATATCAAACTTGAATCGCATTTGTCTTTTTTGGTAGATTTAGACATTTGCACTTAAAAAAATGAATGCTTACTGGAGAAATCTGTGAATA a score=9233.0 s hg17.chr17_random 812378 106 + 2618010 TCAACAAAGTTATCACTTGATAGACTAGAATTAAACAAGCAAGTGGTTCCAAGAAATGGCACGAGTGTATTAATCATAAAATAAAATTTCTACATGAAACATTCAG s panTro1.chrUn_random 143960026 106 + 240967748 TCAAGAAAATTATCACTTGATAGACTAGAATTAAACAAGCAAGTGGTTCCAAGAAATGGCACAAGTGTATTAATCATAAAATAAAATTTCTACATGAAACTTTCAG a score=873.0 s hg17.chr17_random 812484 3 + 2618010 CCA s panTro1.chrUn_random 143960132 3 + 240967748 CCA s canFam1.chr9 23406141 3 - 53642819 CCA a score=-125.0 s hg17.chr17_random 812487 5 + 2618010 TTCTA s canFam1.chr9 23406144 5 - 53642819 CTTAG a score=62229.0 s hg17.chr17_random 812492 438 + 2618010 GACCATTTCTGTCTGTGCAGACTCATCTTTTCCTGTTCTTTGCAAAGCCCAGCTAGAGCAAGCAAGTTCTTCCCAATAGGTTTTTCCCATCTCTGGTTGCTTGGCTGGCTGGGCTTCCTCTACAAACCCCCTTCCTTTCCCCTAAGCAGGGCCCG-GTGTCCCCATCCCGCGGAGTTG----AGCTCATGAGGGCATCTGACCAGGAGTAGCTATTCCTGGTGCTATTGTCATTGTCCTGTTTCATGTGTGAACATGGCTG---GCTCTACAGAGATTTGGCGG----GTA--GCAAGGAGGTTTCTTTTTGAATCTTCTtttggaagt----cagacttgatgaggatcttatgcccactttttcctagctctgtggtgtcaggcaaagtct--gtttctgcaaatgggggttaagaattcctacctcacagcagtcttttgataaataaataagat s panTro1.chr19 35035886 443 + 82489036 GACCATTTCTGTCCGTGCAGACTCATCTTTTCCTGTTCTTTGCAAAGCCCAGCTAGAGCAAGCAAGTTCTTCCCAATGGGTTTTTCCCATCTCTGGTTGCTTGGCTGGCTGGGCTTCCTCTACAAATCCCCTTCCTTTCCCCTAAGCAGGGCCCG-GTGTCCCCATCCTGCGGAGTTG----AGGTCATGAGGGCATCTGACCAGGAGTAGCTATTCCTGGTGCTATTGTCATTGTCCTGTTTCATGTGTGAACATGGCTGCTGGCTCTACAGAGATTTGGCAG----GTA--GCAAGGACGTTTCTTTTCAAATCTTCctttggaagt----cagacttggtgaggattgtatgcccaccttttcctagccctgtggtgtcaggcaaagtctcagtttctgcaaattggggttaagaattcctacctcacagtggtcttttgagaaataaataagat s canFam1.chr9 23406149 429 - 53642819 GACTGCTCCTTCCTGCTCAGACCCATCTTTTCCTCTTCTCTGTGAAGCCCAACCAGACAAAGCAGTCTCTGTCCTGTGGG-ATTTCCCATTTC----TGCCTAGTAGACTGGGCTTCCCC--CCTACTTCTCTCCCTTTCCCTAGGCAAGACCCATACAGCCCCATCATGAGGAGATGAGACAGGCCAGGGGGGCTGCTGACTGGAGGCAGCTAATCTTGGGGCTGTCATCATTGTTCTGGTTCATGGGAGAGCATAGCTACTAGCTCCACAGAACCTTggcagcagtgtagtgtactgaggttt-------------------gaagtcatgcagaccccattctgacccaggcccctcgtcttcctagctctgaagtttcgtacaagttac---ctaccctaaaataggaataatagttcatgccccacagagttgttctaaggattaaacaagat a score=3153.0 s hg17.chr17_random 812930 35 + 2618010 cttaagtgtaaaTTATTCCACTAGAAATTGCACAG s panTro1.chr19 35036329 35 + 82489036 cttaagtgtaaaTTATTCCACTAGAAATTGCACAA a score=26858.0 s hg17.chr17_random 812965 188 + 2618010 TCACTTTGGTCT-TCATCCTGGAGGTCCACTGACAAGCCT-CATGCAAACCTGTGGCCCTGTTCAT---AAAGTGTTTTGATCCATACTTTCAAATGGCCTCAGGAAGACCTTT---TATAAAGTAAAAATGTTAGGCAG-CCACATGATA----------TCCATTGACCCAGTGAGGC---------------TGTTTTACTGGATATAAGAGGTTTGAc s panTro1.chr19 35036364 191 + 82489036 TTACTTTGGTCT-TCATCCTGGAGGTCTACTGACAAGCCT-CATGCAAACCTGTGGCCCTGTTCATCTTAAGGTGTTTTTATTCATACTTTCAAATGGCCTCAGGAAGACCTTT---TATAAAGTAAAAATGTTAGGCAG-CCACATGATA----------TCCATTGACCCAGTGAGGC---------------TGTTTTACTGGATATAAGAGGTTTGAc s canFam1.chr9 23408738 218 - 53642819 TTACCTTGGTCTCTGGGTCTGCAGACCCATTGACAAGCCTCCATTCAAACCCAGGG-CCTGTGCACCTATAAGTGTTTAGATTTGTATTTTCAAATTGGCCCAGGAAGACTGTTACATGCAA---AAAAATGAGAGGCAATCCACAGGGTAGTAGTAGAACCCCTTTGACTCAATGATGCTATTAAACAGCTTTGTATTTTATTAGTTACAACAGATTCCAC a score=25786.0 s hg17.chr17_random 813153 288 + 2618010 ccggcattttggggggccgagacaggcagatcacttgaggccaggagctggagacctgcctggccaacatggagaaaccccatctctattaaaaataccaaaaaaattagctgggcatggtggcacatgcctgtaatcccagctacttgggagactgaggcacaagaatcgcttgaacccgggagtcagaggttgcagtgagccaagccgagatggcgccactgcactccagcctgggcagcagagtgagactctgtctcaggggaaaaaaaa-GGGTGAGGGGAGGGT s panTro1.chr19 35036555 289 + 82489036 ccagcattttggggggccgagacaggcggatcacttgaggccaggagctggagacccgcctggccaacatggtgaaaccccatctctattaaaaataccaaaaaaattacctgggcatggtggcacatgcctgtaatcccagctacttgggagactgaggcacaagaatcacttgaacctgggagtcagaggttgcactgagccaagccgagatggcgccactgcactccagcctgggcaacagagtgagactctgtctcaggggaaaaaaaaaGGGTGAGGGGAGGGT a score=63428.0 s hg17.chr17_random 813441 385 + 2618010 TTGAAAAAATAGTAGCATGTAGTTATGTTTCTACAATATTTGATATATATAAGGATTTACCAACCTCTTGCATTAGCTGCTATCCCCTACAG---CAGTTGCTGTAGGAAAAAAACATCAAGTTCtgagctcctactgtttgccaggcatattctgagatgatcacgttgaaatctcagagttaccctgcagagtagtc-agggtatcactgcctgacagatgaagaagctgaggcttccagcagataaatgacttaccccaggccacatagaaaatgagtgggagagcccaggtctgtctgTGAGGTATAATGAAATTAGCATAAACCCTCCACATTGG--CGCCACTcgcataaattaacatat----attctctcacagaaagtattttatt s panTro1.chr19 35036844 382 + 82489036 TTGAAAAAATAGTAGCATGTAGTTATGTTTCTACAATATTTGATATATATAAGGATTTACCAACCTCATGCATTAGCTGCTATCCCCTATAG---CAGTTGCTGTAGGAAAAAAA-ATCAAGTTCtgagctcctactgtttgccaggcatattctgagatgatcacgtttaaatctcagagttaccctgcagagtagtc-agggtatcactgcctgacagatgaagaagccgaggcttacagcagttaaatgacttaccccaggccacatagataatgagtgggagagcccaggtctgtctgTGAGGTATAATGAAATTACCATCAACCCTCCACATTGG--CTCCACTTGCATAAATTAACATAT------TCTCTCACAGAAAGTATTTTATT s canFam1.chr9 23408961 377 - 53642819 TTTGACAAATAGTAGCATGTCCTTAACTT--GACAATATTTGATCCCTAGGAAGATTTACCAACCTCATGCAATAACTACT-TCCCCAAAAGACACAGTCACTGTGGGAAGAAAC-ACCAAGTTCtgagctcctgctatttgccaggcagattctgagattattgattttaaatctc--agttaccctgcagagcagttgaaaatatcactgttacacaaatggagaaactgaggctcactgcagttaaatgactcagccatggccacgtagata------gGGTCTACATAGG---GTCTGTGAA--AAAATGAAATTAGCACAGGCCCTCTGGTAGGGGCCTTCATTTGTATGCATTAACATATACCAATTCTCTC-TACAAAGTATCCCATT a score=4164.0 s hg17.chr17_random 813826 59 + 2618010 gggcataacagtttgtatcatttaccgtttaacattagccgtggatcttcccacatcac s panTro1.chr19 35037226 59 + 82489036 GGGCATAACATTTTATATGttttaccatttaacattagttatggatcttcccacgtcac a score=447.0 s hg17.chr17_random 813885 4 + 2618010 atga s panTro1.chr19 35037285 4 + 82489036 ataa s mm5.chr11 83332498 4 + 121648857 ATGC a score=13278.0 s hg17.chr17_random 813889 48 + 2618010 ctatgcctcattctttttggataatatgattactattgaatggattta s panTro1.chr19 35037289 48 + 82489036 atatgcctcattctttttcgataatatgattactaatgaatggattta s mm5.chr11 83332502 47 + 121648857 ATAAACCTTATTCTTTGGGGATTTTATGAGTTC-AGTGAATGGATTTA s canFam1.chr9 23409538 48 - 53642819 cTCCACATCATTCTTTTTCGGTTATATGATTACTAATGAGTGACTTTT a score=300.0 s hg17.chr17_random 813937 1 + 2618010 c s panTro1.chr19 35037337 1 + 82489036 c s mm5.chr11 83332549 1 + 121648857 C a score=20944.0 s hg17.chr17_random 813938 90 + 2618010 tatcattcacttaatcaatactccttttgatggccattttaattgtcta---ttttttccttttgcacagattggtgtaataaacgtgatttt s panTro1.chr19 35037338 90 + 82489036 tatcattcatttaatcaatactccttttgatggctattttaattgtctg---tttattcattttgcacagattgatgtaataaacatgaattt s mm5.chr11 83332550 89 + 121648857 TGTAATTCACTTAACCAATAACCGCTT--ATGGCCATGTCATTTGCTTG--ACATTTTGCTATTGTGCTGGCTGCTGTAGTGAACATCATGCT s canFam1.chr9 23409783 92 - 53642819 Tataattcatttacctaatgccctttt-gacagtcatttcatttactttacattttctgctattgtgtagatcgctgtaatgaatgtgatttt a score=0.0 s hg17.chr17_random 814028 6 + 2618010 atagta a score=273.0 s hg17.chr17_random 814028 1 + 2618010 a s panTro1.chr19 35037428 1 + 82489036 a s mm5.chr11 83332639 1 + 121648857 A a score=698.0 s hg17.chr17_random 814029 5 + 2618010 tagta s panTro1.chr19 35037429 5 + 82489036 tagta s mm5.chr11 83333663 5 + 121648857 CACTA a score=18691.0 s hg17.chr17_random 814034 97 + 2618010 atatttttgtctgcctgtgaaaatgtttgctggacaataaattcctaggagtcaa---ataaggtcaaagattataaatacagtatttattttcataaat s panTro1.chr19 35037434 93 + 82489036 atatttttg----cctgtgaaaatgtttgctggacaataaattcctaggagtcaa---ataaggtcaaagattataaatacagtatttattttcataaat s mm5.chr11 83333668 68 + 121648857 ATACAT-------TCTGGGGAGATGAAGCCTG-----TGAATTCTTAGAAATGAA---ATTGT------AATTATAAATAA-----------TTATAAAT s canFam1.chr9 23409875 95 - 53642819 atatttttgtgcacctgtggaaatggttccttgagaataaattcctaggagagaaattataaggtcaaaagttatgaatat-----ttGTTTTCATAAAT a score=32607.0 s hg17.chr17_random 814131 282 + 2618010 attaccaagtC-AGCCACAAATGTTTAAATTACTAATGGTTTCAGATTATTGTATTTAATGAGTAAACACTTTTATAGGGTTTacttttat---gaacacttttatttgccagatatcattctaagtcctttacaaaattaacttttttaatttgtaatataaccctgagatgtatattaggattatcccca-ttctacagata-----agaacactgagaagttaattaa---cttgccacatatctaggaagtgacaaggctagttgcacagccaggcagtctggctcctgag s panTro1.chr19 35037527 282 + 82489036 attaccaagtC-AGCCACAAATGTTTAAATTACTAATGGTTTCAGATTATTGTATTTAATGAGTAAACACTTTTATAGGGTTTacttttat---gaacacttttatttgccagatatcattctaagtcctttacaaaattaacttttttaatttttaatataaccctgagatgtgtattaggattatcccca-ttctacagata-----agaacactgagaagttaattaa---cttaccacatatctaggaagtgacaaggctagttgcacagccaggcagtctggctcctgag s mm5.chr11 83333736 264 + 121648857 GTTATCAAACCAAGAAGCAAATG-CTGGGTCACAGACGGTTTCCAGTCATTGTATTTAA-AAGTAAGAAC-TTTATTGAGTGTACTTTTACAAAGGAAACACTTATGTTCCAGGCTCTGTACTAGATGCTTTGTGAGATTTACTTCTTTGGTCTTTAATGTCTTTC--------ATCTCGGGAAAACACGTGTTTCTATGGATGTTGATAGTACTCTGATACATTGAGTAGAGCTTTCCCACAGTCCTTTGGGATGAGA---------GTATA-----------TGTCTCCTGAG a score=3029.0 s hg17.chr17_random 814413 32 + 2618010 tccacattttagacaacactatacCTCCTGGT s panTro1.chr19 35037809 32 + 82489036 tccacattttagacaacactatacCTCCTGGT a score=22305.0 s hg17.chr17_random 814445 166 + 2618010 TCTTTTGAGGCATTACTGCTGGAACTATCCTAATACTCATAAATAAACATTTCTTTTGGGGAGGGCCAAATAAAATTTTA------AACAGAAAAGT-TTTCACCAACT----GTCAAGCTCATAAAGTTGTACGTTATACACTTTTTTCATGATGCCCAC-AGATAATTTATTAATG s panTro1.chr19 35037841 167 + 82489036 TCTTTTGAGGCATTACTGCTGGAACTATCTTAATACTCATAAATAAACATTTCTTTTGGGGAGGGTCAAATAAAATTTTA------AACAGAAAAGTGTTTCACCAACT----GTCAAGCTCATAAAGTTGTACATTATAAACTTTTTTCATGTTGCCCAC-AGATAATTTATTAATG s mm5.chr11 83334035 170 + 121648857 TCCTTGGAGGTATG--TTCCAGAATTACTGTAACCCTCATAGGTAGACATTTCTCTGGGACAGGAAGATGTTATATTTAGCCTTGCAACAGAGAACTAGTCCACTAGCTAAAGGCTGTGGTTACAGAACCATACACT------TTTTTTCATGATGCCCACAAAATAATTTATTAAGG a score=14282.0 s hg17.chr17_random 814611 126 + 2618010 ATATCATCTATTTTAAAAGACGTATGTAAAACCCAACCCTTAAGAAAGGATTCCTATCACTGTTCCC-ACAGGCACCCTCCTCAGTCTTATACCTTTCCATTCCACCCCCCAAAACAAATCATTCAG s panTro1.chr19 35038008 122 + 82489036 ATATCATCTATTTTAAAAGACATATATAAAACTCAACCCTTAAGAAAGGACTCCTATCAGTGTTCCCCACAGGCACCCTCCTCAGTTTTACACCTTTCCA-----CCCCCCAAAACAAATCATTCAG s mm5.chr11 83334363 116 + 121648857 ATATCATCTAATTAAAACAATGTATCTAAATCTGAGGCTT--AGGAAGGATTCTGATTAA----CCC-ACAGACACCTGACTCCTTCCTATACCCTTTCTTTT--TTCCACAAGAATAATCCT--AT a score=23926.0 s hg17.chr17_random 814737 141 + 2618010 CATATTTAT-------TTCATAC---TGTAATATAGGAAGTAGCTTCTTTTTAGATTTTCTTAGATTATTAACATTGATCATACAAACATGGAATAGAAATTCCTTATGTTTTATCTGGATTTAAGGTGCTACATAATGGAATCTATTTCT s panTro1.chr19 35038130 140 + 82489036 CATATTTAT-------TTCATAC---TGTAATATAGGAAATAGCTACTTTTTAGATTT-CTTATATTATTAACATTGATCATACAAACATGGAATAGAAATTCTTTTCGTTTTATCTGGATTTAAGGTGCTACATAATGGAATATATTTCT s mm5.chr11 83334479 99 + 121648857 CATAATACC-------GTAACTA---TATAATATAATGTATAG-----------------TTATATTA-TAACATTA--TATATAA----------------------GTTTTATCTAGATGAAAGACGTTGTAATGTAGGGCTCATTTCT s canFam1.chr15 40628565 151 - 67237905 CATATCTATTCATATATTCATACCTATATAATATGGGTAATAGCTACTTCTTACATTTCCGAGTGTTATGAATATCAGTCATGGGAATATTGAATAGAAATTCCTCATATTTCATCTAGATTCAAGACACTACAAAATGAAATGTATTTCT a score=91.0 s hg17.chr17_random 814878 1 + 2618010 A s canFam1.chr15 40628716 1 - 67237905 A a score=91.0 s hg17.chr17_random 814878 1 + 2618010 A s panTro1.chr19 35038270 1 + 82489036 A a score=12378.0 s hg17.chr17_random 814879 60 + 2618010 TCAAGCCATACACATTGGAGATAATGAAATCACTTGTGTTCTAGCCTAAACGTTATGGGA s panTro1.chr19 35038271 60 + 82489036 TCAAACCATACACATTGGAGATAATGAAATCAATTGTGTTCTAGCTTAAACATTATGGGA s mm5.chr11 83335990 50 + 121648857 TTAAGTTACATACACTAGATATAGTGACATGAA-----CTCCTACTTAAACATTA----- s canFam1.chr15 40628717 56 - 67237905 TCAAGCCACATATACCAGATATAGC-AAATGAA---TATTCTAGTTTAAAAATTATGAGA a score=4380.0 s hg17.chr17_random 814939 16 + 2618010 ATTTCAGAACTGCAAC s panTro1.chr19 35038331 16 + 82489036 ATTTCAGAACTGCAAC s mm5.chr11 83336040 12 + 121648857 ----CAGAACTACCAC s canFam1.chr9 23404301 16 - 53642819 ATTTTGGAATTGTAAG a score=29752.0 s hg17.chr17_random 814955 179 + 2618010 ATAACAGATAATCCTTGAACGAAAACTAAATCTCTCCTCTGGTCAGGCATCTATGTGCATCAGTGAAGAGAAGACGGGGACTGTG-GAAGGGAAAACAGTGAGTCAGGAAGGACTGTGGCCACATCTGTTCCCCGGACCCTCAAGTAGTTAAATCCTGACCTCCTCTACCCCAGACTGTC- s panTro1.chr19 35038347 179 + 82489036 ATAACAGATAATCCTCGGATGAAAACTAAATCTCTCCTCTGGTCAGGCATCTGTGTGCATCAGTGAAGAGAAGACAGGGACTGTG-GAAGGGAAAACAGTGAGTCAGGAAGTACTGTGGCCACATCTGTTCCCCGGACCCTCAGGTAGTTAAATCCTGACTTCCTCTACCCAAGACTGTC- s canFam1.chr9 23404317 168 - 53642819 ---------ACTCCAAAGCTTTGAACTGAGCTTTTCCTCTTATCAGGCATCTGTGAGCACCAGTGCAGAGAAGTCAGGGGCTGTGAGAAGGGAAAATAGTGCATCAGG-AGGATCATGATCACATCTGCTCCCC--ACCGTCAAATAGGTAAGTCCTGACTTCCTCCACCCT-GCCTGTTC a score=45778.0 s hg17.chr17_random 815134 196 + 2618010 CTGGGGAACG-----------GCCAA---CACTGGCTTTTCACAACTGTGT-GTTA-CCAGAAATGCAACAGAAACCCAGCTGAATCCCCAGGGTTTCCC---TTCTGCCCTTCTCAATGGAAAGATCTGTCCCAGGACCATTTATTCCAACATTTTCAATTATGAGAAATCTGGGAAGATAAAGTT-ATTTTCACATTTCTCAAGAAATACATAC s panTro1.chr19 35038526 196 + 82489036 CTGGGGAATG-----------GCCAA---CACTGGCCTTTCACAACTGTGT-GTTA-CTAGAAATGCAACAGAAACCCAGCTGAATCCCCAGGGTTTCCC---TTCTGCCCTTCTCAATGGAAAGATCTGTCCCAGGACCATTTATTCCAACATTTTCAATTATGAGAAATCTGGGAAGATAAAGTT-ATTTTCACATTTCTCAAGAAATACATAT s mm5.chr11 83336052 185 + 121648857 CTGGTGATTG-----------GCCAAGACCAATGG--TTCCCCAATCGTGTGGTTA-CTAAAAATGCAGCAGAAATCTAGCTGCATCCTTGTGATTTCCC-----CTGCCCTTCTCAAGGGAAAGATCTGTCTCAGAACCAT---------CATTTTCAAGTATAAGAACCTTTG---GATGTGGTTAACATTTGAATTTCTCAGTGAATACATAT s canFam1.chr9 23404485 202 - 53642819 CAGGAGAATGAGAAGTTTGGTGCTAT-----CTGAACTTTCACAGTTGTGTGGTCACCCAGAAATGTGGGAGAAATACAACTGAATGCTGAAGCCTCCCTGCGTTCTTGCCCTTTGGAGGTAATGGTTGGTCCTGAGGCCCTTCATCCCAACATTTTCAAGTATGAGAATCCTGA-------AAATT--TTTTCGTCTTTCTCAAGGAATATATAC a score=0.0 s hg17.chr17_random 815330 25 + 2618010 TTATTCATACTCATGACAggaaagt a score=3659.0 s hg17.chr17_random 815330 14 + 2618010 TTATTCATACTCAT s panTro1.chr19 35038722 14 + 82489036 TTattcatactcat s mm5.chr11 83336237 14 + 121648857 TTATCCATACTCAT a score=832.0 s hg17.chr17_random 815344 11 + 2618010 GACAggaaagt s panTro1.chr19 35038736 11 + 82489036 tacaggaaagt a score=22473.0 s hg17.chr17_random 815355 227 + 2618010 cagaatctacagaaaaccaagaagatttttaaaaa-----tccatgataccaccatcaaaagagccacactta-----gtatgttggtccacaggtttcctagcacccttttctgttggtgtatgcacaaaatacacaatcacattctgtctacattttacaatttgccatttt--ttgatta-acac----tatatattgaccaatttttaagacctgcaacatatgtcgacaacattatttc s panTro1.chr19 35038747 227 + 82489036 cagaatctacagaaaaccaagaagatttttaaaaa-----tccatgataccaccatcaaaagagccacactta-----gtatgttggtccacaggtttcctagcacccttttctgttggtgtatgcacaaaatacacaatcacattctgtctacattttacaatttgccatttt--ttgatta-acac----tatatattgaacaatttttaagacctgcaacatatgtcgacaacattatttc s canFam1.chr9 23404687 218 - 53642819 CAGAAAGTATAGAA---CAAATTGATGGCAAAAAAATGTGCCTATAATCTCATTACCAGGAAATAAATGTGTGTGTGTGTGTATATGTGTATATATTTTCAAG----------GGGTATGGTACCCAAAGATCATGGCATCACACTCCAAAAACACTTTTAAGCTTTCTTTTTTTGTTGTTTCTACACTTAATACATAGTGAACAGTTTTT-------------CATGTCCATGGAAGTATTTC a score=2744.0 s hg17.chr17_random 815582 31 + 2618010 agaataatatatttataaataaacgcacaca s panTro1.chr19 35038974 31 + 82489036 aaaataatatatttataaataaacgcacaca a score=7900.0 s hg17.chr17_random 815613 44 + 2618010 caaactgtctgtcttat--atacaacacgtcttactttctaattct s panTro1.chr19 35039005 44 + 82489036 caaactgtctgtcttat--atacaacacgtcttattttctaattct s canFam1.chr9 23404928 46 - 53642819 CAAACTGTTTTCATTGTGAATATAGCACATTTTGCTTACTAATTCT a score=189477.0 s hg17.chr17_random 815657 2119 + 2618010 ccactctggaagatttaggttttcctaacttt---ttaatatactcaccaggaatcagtaaactttttttataaaaggccaaagggtagatattttaaactctgcaggccataggtttctgttgcaacactcaactctgctgttgcagggaaagaagccatacacaatttgtaaatgaatgggcatgactgtgttctgataaactttacaaaaacaggtggtggactagatgcagcctgctcctctggacatggcttaccagcccctgacatataccactacagaggatgctgttagaatgaaatctctttacacatctctgatcatctccttaggactaattgctagacatgacatcatggtagctgtgggtcaaagggcatgcacgctctgggatgtacattgccagattgcTCATGATCAGCCTTTCTCATGTCAAAATGTTTTGTGACCACCAGAAGGCTGGTTCTGCTTTTATTATCCATTGACTGAGGAGTAGAAATGACATGGCATGTATGCAGGATATTTAACCATCGTATAGATAATCCTTGTGCACAAGTGCATTCTATATTCTTTCCCAATAGGTCTACATCTGCCAGAGTTGAAATAAAATAAAACAAAACAAACCTATTTAGCACCTTCTGTGTAGCAGGTCCATTCATGTATGTTGTTGTATTTCATTCTCAGAATTCTTATGACCTAGGCattttaaaaatttttttaaaaatattgagttgacaaggattgtgtatatttaatgcatacaatgtgatgatttcatatatgtatatattgtgtactaattatcacaatcaaatttattacatccattaccacctatgctgtacattaaatctccagaatttgttcatcttataactgaaagtttacaccctttgattaatagcttcccattttccccacctccagcccttggcaaccaccattctactatctgtttttatgagtttgactctcttagatcccacatataagtgagatcatacaaaacttgtctttcggtgtctggcttatttcacttagcgtaatgtcctccaggtttatccaggacaggagtttcttcttttgaatggctaatagtccattgtttatatgtattttatttatccattcatctgttgctggacacttaggctgtttccatatcttgggtattgtgaatagtgttgtaataaacatggggcgcagatctctcttcaaggttctaacctgattgctgaatcgtatggtagttctgcttctaattttttgaggaacctccatactgttttctgtaaaggttataccactttacattccaaccaacagtgtacaagggttctctttcctctatgctttcgccaacacttgttatctcttgtcgtttttttataagagccatcctatcctatgaggcaatatctcactgtggttttgatttgcatttctctgatgattagtggtgttgagcaccttttcatatgctggctggccatttgtatatcttccttggggaaaaaagtccattggggtcctttgcctatttttaattgcgttattcatg--tatttattaatttttgctattgaattgtgtgaattccttatattttttcaaataaccccttatc-aaatatatgggtcgcaaatattttcttccatcccgtaggttgccttttcattttgtcatggtttcctttgctgtgtaaaaccttttaagattgatgtagtcccatttatttattttcacttttgttgcctgtgctttggtgttacatcaaaaaaaatattgccaattatgaccaatgtcgaggagatttttccctatgtttacttccaggatttacatggtttcagatattacatttaaatctttaatccactttgagctaattttctgtatatgatgtaaaacaagtgtgcaatttcattctttttcatgcactttccccaacaccattcattgaagagagtttcctttctacattgtgcctttttTTTTTTTtacagtacagtgaaagcaagtctattaagaaagtaaaggaataaaagaatctacattgtatatccttgatggccttgtcaaagatctgttgaccatatatgcacggggttatttctgggt s panTro1.chr19 35039049 2118 + 82489036 ccactcttgaagatttaggtttttctaactttttcttaatatactcaccaggaatcagtaaactttttttataaaaggccaaagggtagatattttaaactctgcaggccatagatttctgttgcaacacttaactctgctgttgcagggaaagaagccatacacaatttgtaaatgaatgggcatgactgtgttctgataaactttacaaaaacaggtggtggactaaatgcagcctgcccctctggacatggtttgccagcccctgacatataccactacagaggatgctgttagaatgaaatctctttacacatctctgatcatctccttaggactaattgctggacatgacatcatggtagctgtgggtcaaagggcatgcacgctctgggatgtacattgccagattgcTCATGATCAGCCTTGCTCATGTCAAAATGTTTTGTGACCACCAGAAGGCTGGTTCTGCTTTTATTATCCATTGACTGAGGAGTAGAAATGACAAGGCATGTATGCAGGATATTTAACCATCGTATAGATAATCCTTGTGCACAAGTGCATTCTATATTCTTTCCCAATAAGTCTACATCTGCCAGAGTTGAAATAAAATAAAACAAAACAAACCTATTTAGCACCTTCTGTGTAGCAGGTCCATTCATGTATGTTGTTGTATTTCATTCTCAGAATTCTTATGACCTAGGCAtttaaaaaaatttttttaaaat----agttgacaaggattgtatatatttaatgcatacaatgtgatgatttcatatatttatacattgtgtactaattatcacaatcaaatttattacatccattaccacctatgctgtacattaaatctccagaatttgttcatcttataactgaaag-ttacaccctttgattaatagcttcccattttccccacccccagcccttggcaaccaccattctactatctgtttttatgagtttgactctcttagatcccacatataagtgagatcatacaaaacttgtctttctgtgtctggcttatttcacttagcgtaatgtcctccaggtttatccaggacaggagttacttctttttaatggctaatagtccattgtttatatgtattttatttatccattcatctgttgctggacacttaggctgtttccatatcttgggtattgtgaatagtgttgtaataaacatggggcacagatctctcttcaaggttctaacctgattgctgaatcgtatggtagttctgcttctaattttttgaggaacctccatactgttttctgtaaaggttataccactttacattccaaccaacagtgtacaagggttctctttcctctatgctttcgccaacacttgttatctcttgtcgtttttttataagagccatcctatcctatgaggcaatatctcattgtggttttgatttgcatttctctgatgattagtggtgttgagcaccttttcataggctggctggccatttgtataccttccttggggaaaaaagtccattggggtcctttgcctatttttaattgggttattcatgtatatttattaatttttactattgagttgtgtgaattccttatattttttcaaataaccccttatcaaaatatatgggttgcaaatattttcttccattccgtaggttgtcttttcattttgtcatggtttcctttgctgtgtaaaaccttttaagattgatgtagtcccatttatttattttcacttttgttgcctgtgctttggtgttatatcaaaagaaa-attgccaattatgaccaatgtcgaggagatttttccctatgtttacttccaggatttacatggtttcagatattacatttaaatctttaatccgttttgagctaattttctgtatatgatataaaataagtgtgcaatttcattctttttcatgcactttccccaacactattcattgaagagagtttcctttctacattgtg-cttttttTTTTTTtacagtacagtgaaagcaagtctattaagaaagtaaaggaataaaagaatCTATattgtgtatccttgatggccttgtcaaagatttgttgaccatatatgcacggggttatttctgggt a score=45912.0 s hg17.chr17_random 818098 510 + 2618010 gagcttggcatttttatctacctcattctaccgatgaggaggccgagtctcagagagttcacagacctgcctaaggtcactcagctagaggtgatacaaccagggtttgaactgagatctgccaagcttctgagtttattctttttcccccac-acca-aggatcctcaattctgccttactgacatcaggatccggtcaattctttgtgatgggggctgtcctgcacctgg-caggatgtttagcagcttctctggcctccacccactggatgccagGGGAATGCAGAAGAGGCTTGTTcattctcccatttaatcctcaggacaatatctgacataaatgttacgtcttttattttataaatgaagaaaatgagactcagaaaggtttaagtgagttacttaagaacacacagacagcaagaggtagaactggaaaccgaacacaggtGTCCACATGGGACAACAAAAAAGTTCACGTTCCATCTTCTTTTGAGTCTCTCATTTCAATAAT s panTro1.chr19 35041167 513 + 82489036 gagcttggcatttttatctacctcattctaccgatgaggaggccgagtctcagagagttcacagacctgcctaaggtcactcagctagaggtgatacaaccagggtttgaactgagatctgccaagcttctgagtttattctttttcccccaccacCAGAggatcctcaattctgccttactgacatcaggatccagtcaattctttgtgatgggggctgtcctgcacctgggcaggatgtttagcagcttctctggcctccaccgcctggatgccagGGGAATGCAGAAGAGGCTTGTTcattctcccatttaatcctcaggacaatatctgacataaatgttatgtcttttattttataaatgaataaaatgagactcagaaaggtttaagtgagttacttaagaacacacagacagcaagtggtagaactggaaaccgaacacaggtGTCCACATGGGACAACAAAAAAGTTCACGTTCCATCTTCTTTTGAGTCTCTCATTTCAGTAAT a score=121510.0 s hg17.chr17_random 818608 753 + 2618010 TACCATTGTGTGGATATGAGCTGAAGTACAGGAAACCTGGGG-CTGAACTCTCCTCCCATCAGGCCTAGGAGCCCCAGACCAGAACCCCAGCCCAAGGTCTCCCAGTCAGGCCCGCTGGCGT-GAGCTGGCATCTACACTAGCATGGTCTCCCAAAGCTGCAGGGATGCCAGTCTCGCCGCTGATGAAGAAAATGAAGGGCATTTGCTTCTCATGCAGGCTGTCGGGATTTAACACAGATTCCTTTTCTTGCTCTCTTCTCCCATAGCACAAAACTGGGTGGTCCATCCCCCTCCCAGTGTCCC---AAGGCTTT-GTTGCGTGTTCTCTTTAATTTCTCCCACTC-TTGCGGTGTACCCTACCCTCATCTCCCTGGCAACCTTTCTGCTGTATCCTCTCGACACCTGGATCACAAGAACA-CTTGTGAGACCCCTTAACAAGTTACATCCCAAATTATCATTCCCC--TTTGTCCTCAGCCAGTGCTCAGGTCCAA---CTTGCTCTCCTGGGGTGACTTTCTTTCCTGCCCAATATGgtttcatcatctgtaaattgggg-ataattaaagtCTTGATCCTG--ATATTTGACTCTCAAAGCAGAAGTAGCAAGCTCAGCCAAGTCACTTCAACAAGAGGAGAAGTTCCTTGTGAACCAAAAGGGCACTGGTCACAAGGGCCGCTCCTTCTTCTGTCAGGCCTCTCCAGCACGCCCTTGGCT---CAGCCAAAGAAGAGACTCAGGCTGTGCTTCTGC-ACTGTTGGGATA s panTro1.chr19 35041680 753 + 82489036 TACCATTGTGTGGATATGAGCTGAAGTACAGGAAACCTGGGG-CTGAACTCTC-TCCCATCAGGCCTAGGAGCCCCAGACCAGAACCCCAGCCCAAGGTCTCCCAGTCAGGCCCGCTGGCGT-GAGCTGGCATCTACACTAGCATGGTTTCCCAAAGCTGCAGGGATGCCAGTCTCGCCACCGATGAAGAAAATGAAGGGCATTTGCTTCTCCTGCAGGCTCGCGGGATTTAACACAGATTCCTTTTCTTGCTCTCTTCTCCCATAGCACAAAACAGGGTGGTCCATCCCCCTCCCAGTGTCCC---AAGGCTTT-GTTGCGTGTTCTCTTTAATTTCTCCCACTC-TTGCGGTGTACCCTACCCTCATCTCCCTGGCAACCTTTCTGCTGTATCCTCTCGACACCTGGATCACAGGAACA-CTTGTGAGACCCCTTAACAAGCTACATCCCAAATTATCATTCCCC--TTTGTCCTCAGCCAGTGCCCAGGTCCAA---CTTGCTCTCCTGGGGTGACTTTCTTTCCTGCCCAATATGGTTTCATCATCTGTAAATTGGGGGATAATTAAAGTCTTGATCCTG--ATATTTGACTCTCAAAGCAGAAGTAGCAAGCTCAGCCAAGTCACTTCAACAAGAGGAGACGTTCCTTGTGAACCAAAAGGGCACTGGTCACAAGGGCCGCTCCTTCTTCTCTCAGGCCTCTCCAGCACGCCCTTGGCT---CAGCCAAAGAAGAGACTCAGGCTGTGCTTCTGC-GCTGTTGGGATA s canFam1.chr9 23412884 726 - 53642819 TACCATCCTGTAGACAGGAACC-CGGAGCAGGCAGTCTAGGGCCTGAACTCCCCTCCTGTCAGGCCT----------------GATCCTGGCCTGAGGCCTTACAGCCAGGCTCACTGAAGCAAAGCTTGCCCCCACATTAGCCTGGTTTCCCAAAGC--CACGGATACCGGTGTCTCAGCTGGTGGACAGAGTCAAGGATGTTGCCTCCCCCTACAGGTGGCCGGGGTTTGGCGCAGCTTCCCTTTCTCATGTTTTTCTACTGGAGCACAAAGCAGAGTTGGC---CCCACTCCGAATCCCCTTGGAAGGCTTTGGTTGCATATTCTCTTTAGTTTGTCTTGCTCTTTGATGGGCACCCTATTCCCATCTCCCTGGCCACCTTTCTGCACAATTCTCT----ACATAGTGCATCAGAACATTTTGAGAAGTCCTTTGGCAAGCTGCACCCCA------CGGCCCCCAGTTTACCCTCAACCAGTGCCCCAGACCAAACCTTTGGTCCCTCTGAATGATTTTCTTTCTTGTTCAATATGATTTCTTAATCTGTGAGCTATTA-ATAATTAAGGTCTTGATCCTGATATATATGACTCT-AAAGCACAAGTTGCAAACTCGGCCAAGCCACTTAGATGGGAGGAGATACTGCTT-TGAACCTAAAGGATGCTGGTTACAATGGCCAC-----------TCAGGCCCCTCAAGCATGCCATTGGCCTCGCTGCCAGAGAAGGGACT-AGGCTGTGCTTCTGCTGTGGCCAGGATG a score=3809.0 s hg17.chr17_random 819361 7 + 2618010 ACATAGG s panTro1.chr19 35042433 7 + 82489036 ACATAGG s mm5.chr11 78561373 7 + 121648857 ACTCAGG s rn3.chr10 65074780 7 + 110733352 ACTCAGG s canFam1.chr9 23413610 7 - 53642819 ACGGAGG a score=20721.0 s hg17.chr17_random 819368 100 + 2618010 CCTCTTCCATGTGGttccacaccaggaacatggggaca-atcagacctct---cccag---tgtgggcataaggatacaagatcatgTCAATAT----TGACATTCATAAT s panTro1.chr19 35042440 100 + 82489036 CCTCTTCCATGTGGTTCCACACCAGGAACATGGGGACA-ATCAGACCTCT---CCCAG---TGTGGGCATAAGGATACAAGATCATGTCAATAT----TGACATTCATAAT s mm5.chr11 78561380 90 + 121648857 CCTCCTCTATGAGCTTTTCTATCAGG---ATAGGGAAACCCCAGACATCC---CTTGC---TATGTGGGAAGGGATA------------AATATAAGATGACAGCTTTACT s rn3.chr10 65074787 90 + 110733352 CCTCCTCCATGAGCTTTTCTATGAGG---ATAGGGAAGCCCCAGACCTCC---CTCAC---TCAGTGAGAAGGGATA------------ACCATATGATGACAACTTTACT s canFam1.chr9 18859851 97 - 53642819 CCACCTCCACATGACtccacacctggagaatgggagta-atcaaatctcagagctcaggcatgcgggtaaaatgagatac---------tgtat----TAATATCCATACT a score=27978.0 s hg17.chr17_random 819468 308 + 2618010 ggctgggcgcagtggcacacgcctgtaatgccagcactttgggaggctgaggtgggcagattgcttgaaccccagagttcgaaaccagcctgggcgacttggcaaaaccagtctctactgaaaa-tacaaacaattggctgggcttggtggcgcacacctgtagtctcagctacttgggaggctgaggtgggaggattgctcaaacccagggaggttgaggcttcagtgagctatgatggcactgctgtactccaacctgggcaacagagtgaggccctgtctcaaaacaaaaacaaagacaaaacaaC s panTro1.chr19 35042540 309 + 82489036 GCctgggcgcagtggcacaggcctgtaatcccagcactttgggaggctgaggtgggcagattgcttgaaccccagagttcgaaaccagcctgggcgacttggcaaaaccagtctctactgaaaaatacaaaaaattggctgggcttggtggcgcacacctgtagtctcagctacttgggaggctgaggtgggaggattgctcaaacccagggaggttgaggcttcagtgagctatgatggcactgctgtactccaacctgggcaacagagtgaggccctgtgtcaaaacaaaaacaaagacaaaaCAAC a score=2120.0 s hg17.chr17_random 819776 9 + 2618010 ATTCATAAT s panTro1.chr19 35042849 9 + 82489036 ATTCATAAT s mm5.chr11 78561470 9 + 121648857 ATCCAGGAA s rn3.chr10 65074877 9 + 110733352 ATCCATTAC a score=217666.0 s hg17.chr17_random 819785 611 + 2618010 AGTAGCAATAGCTACTATGTGCCAAGCCCAGGCACCTCTTCGAGTCTTTGCTGTCACCCTATCAGGTAAGCGTGCTTAGAAG--TTACACGaagcacacggctcagtgtttggcccacggtaagggcctaaaaagggatagccccaGTGGTGGGGATGCTGCTGC---------TGCTGACCATTAACCCCAGTCTGCTCCACCTTCTTCCAGGCAGTCTGTGAGATGTTTCATGTCCGAGGCAAACAGCACATTCAGATCCCCAAGCTCTACACCTCCAGTGTGACCAGGCACCTGCACCACTTCAGGCTCATGCAGGACTCACAGCCTTTGGACCTCAGCTAAAGGACTTGCTTCTCTTCAGCACACGGGG------------CTTGTTTGTGTTGGGG---TCTGAGCCCTGAGCCCATGGTCAAGGAGACCCCCAGGTCTTTCTGAACAGAGACAGCTGGCCTGG-------GGGCCTCCCTCTCACT-GCGTGCAAGAGGCTGTTAGGGTGCAAGACTCAAGG-----------CGCTGAGGGAGGCTGTTTCAGAAGGGAGCCCCAGGAGGGTGGTGG--AGACAGAAGGGGGCAGCATCTGCCGAGGCCCTACTG-------TGTGCCTGGCACCGTGTGGGGTTTCTGGCCCATATG s panTro1.chr19 35042858 611 + 82489036 AGTAGCAATAGCTACTATGTGCCAAGCCCAGGCACCTCTTCGAGTCTTTGCTGGCACCCTATCAGGTAAGCGTGCTTAGAAG--TTACAGGAAGCACACGGCTCAGTGTTTGGCCCATGGTAAGGGCCTAAAAAGGGATAGCCCCAGTGGTGGGGATGCTGCTGC---------TGCTGACCATTAACCCCAGTCTGCTCCACCTTCTTCCAGGCAGTCTGTGAGATGTTTGATGTCCAAGGCAAACAGCACATTCAGATCCCCAAGCTCTACACCTCCAGTGTGACCGGGCACCTGCACCACTTCAGGCTCATGCAGGACTCACAGCCTTTGGACCTCAGCTAAAGGACTTGCTTCTCTTCAGCACACGGGG------------CTTGTTTGTGTTGGGG---TCTGAGCCCTGAGCCCATGGTCAAGGAGACCCCCAGGTCTTTCTGAACAGAGACAGCTGGCCTGG-------GGGCCTCCCTCTCACT-GCGTGCAAGAGGCTGTTAGGGTGCAAGACTCAAGG-----------CGCTGAGGGAGGCTGTTTCAGGAGGGAGCCCCAGGAGGGTGGTGG--AGACAGAAGGGGGCAGCATCTGCCGAGGGCCTACTG-------TGTGCCTGGCACCGTGCGGGATTTCCGGCCCATATG s mm5.chr11 78561479 582 + 121648857 AATATCACTAACCACTGTGTGCCAAGCCTAGGATTCTCTGAGCGCCTCCAGC----CCCTTTCAGATG---GCACGTTGTGA--TTCTGTGATGC-CGCCATTCGGTATTTGACCCATGGTGAGGG--------------------GTGGTGA---------------------CGGTGACGATGAATGCCATTCTGCCTAAC---TTTCCAGGCAGCCTGTGAGACCTTTGATGTCCGAAGCAAACATCACATTCAGATCCCGAAACGCTTCACTTCCAATGCAACATGGGAGCCACAGCAATATAGGCTCATCCAGAGCCCGGAGCCTTTAGACCTCAACAGAGGTAAGAGCCCCTCTGCACCCTACTGGG-------CCTTCCCTGCTTGAGCTGAGGCTATCTGAGCCCTGAACCAGTAGTCAAAGAATCCACCATGCCCTTCT-AATGAAGGCAG-TCACCTGGAACTGCCAGGCAGCTGTCTCCCT-GGCCAC-AGGGTCTGTT--GGTACAGAGCTTCAGG-----------CTCTGAGGGAGAGCGGGTCA----GGAGCCCTGAGAGAGTGGTAG-TGGGCACAGGGAGCTGGCATCAGCAGGTGGGTGGTGGCGATAGCTGTGCCAGGCACTGTGCCGGCCTCTTGGCCCACATG s rn3.chr10 65074886 565 + 110733352 AGTATCCATAACCACTGTGTGCCAAGCATGAGATTCTCTGAGCTTCTCCAG-----CCCCTTCAGAGG-ACACACTGAGGTG--TTCTATGACAC-ATCCGTTCAGTATTTGACCCATGGTGAGGG--------------------GTAGTGAC---------------------GGTGATGATGAATGCCATTCTTCCTAAC---TTTCCAGGCAGCCTGTGAGACGTTCGATGTTCGAAGCAAACATTGCATTCAGATCCCGAAACGCTACACTTCCAACGCAACATGGGAGCCAGAGCAGTACAAGCTCACCCAGAGCCCAGAGCCTCTAGACCTCAACAAAGGTACCAGCCCCTCC-CACCCTACAGCT--------CTTTCCTGCGGGAGTTGGGGCTATTTGAGCTCTGAACCAATAGTCAAAGAATCCACCATGCCCTTCTGAATAAAGGCAG-TCCCCTGCAACTCCCAGGCATCTGTCTCCCT-GGCTAC-AGAGCCT------------------AGG-----------CTCTGTGGGAGAGCCGGTCA----GGAGCCCTGGGAGAGTAGTAT-TGAGCACGGGAAACCAGCATCAGTGGGTGGGTGGTGGAGACAACTCTGATAGGCACTGTGCCAGCCTCTTGA-CCACATG s canFam1.chr9 18859948 644 - 53642819 AATAGCAGTAACAACTGTGTGCTAAGTCCAGCCACTTCTTTGAGTCCTTGCAGCAGCTCTATCAGATCCATGTGCTCAGTAATTTTACAGGAAGCACTTTACTGA---TTT--------GTAAGGACCTACAAAATGGTGGCCG--ATGATGACATCGACCTTGTTAACCACAATGACAGTGGTTAACACCGGCCTGCTCCATCCTCTTCCAGGCAGCCTGTGAGACGTTTGATGTGCGAGGCAAACACTGCATTCAGATCCCCAGGCTCTACACTTCCAATGTGACCTGGGACCCACACCAATACAGGCTCGTGCAGGACTCGCAGCCTCTGGACCTCAACAAAGGTACCTGCTTTGCCGCACCACACGAGACTGGTTGCCCTTCCTGCTGGGGTGGAGG-TCTCTGACCCTGGGGTCTATGGTCCAGGAGACCACTAGGACCCTCTGAACAGAGACAGCTGGCTTAGGGCTGCTAGGCCTCTCTCTATCTCGTATCCAAGAGCCTGCTGGCATGCAAGACTGGAGAGCTTGCTTCATCTCTGAGGGAGGCTGTTTCAGGAGGAAGCCCTGGGAGGGTGGTGGAGAGACAaagggaaccagcaccaactgagagcctccta-------tgtgccaggcactgtgctgggctcctcgcctgccca a score=-338.0 s hg17.chr17_random 820396 4 + 2618010 GGCT-- s panTro1.chr19 35043469 4 + 82489036 GGCT-- s mm5.chr11 78562061 4 + 121648857 AACT-- s canFam1.chr9 18860592 4 - 53642819 --ctct a score=-329.0 s hg17.chr17_random 820396 4 + 2618010 GGCT-- s canFam1.chr9 18860592 4 - 53642819 --ctct a score=5268.0 s hg17.chr17_random 820400 38 + 2618010 AAGTGACCCTGCACACTCCTCTTAG----------GAGAGAGGCTCAG s panTro1.chr19 35043473 38 + 82489036 AAGTGACCCTGCACACTCCTCTTAG----------GAGAAAGGCTCAG s rn3.chr10 65075451 47 + 110733352 AACTGGCCTGTGACACTTGTCCTGGCACTTGACCTGTGACAAATCCA- s canFam1.chr9 18860596 38 - 53642819 cagtgagccctgacactcatcttgc----------aagaagggcaCAA a score=55732.0 s hg17.chr17_random 820438 313 + 2618010 ATGGAGAAATTGCAGTTCAGGAAGGTGAAGCAAGC-TGCTAGCCTGTGGCCATGTTGGGATCTGGGCCTCAGCCTTCCAGCCACGAAGGCAGCCAAG----------TGTCATGAAGAAGGCATCACAGAGGCAATTCCAGGCTGTAG-TGGTGAACTTTCCACTCTGCAT-CCCCGGGTGCTGTG----------CCCTGTGCCCTGTCTAAGGTAG---CCCTGTGGGTTT-CTATATGTTTAAATTGTCCCCAGCATCAATGATGCTCTCCTGTGGATCCCAAGCCATGGAGATGTCCTGGGACTTTTCATTTTTAGGTACCTAAATTGAATTTCCC s panTro1.chr19 35043511 313 + 82489036 ATGGAGAAATTGCAGTTCAGGAAGGTGAAGCAAGC-TGCTAGCCTGTGGCCATGTTGGGATCTGGGCCTCAGCCTTCCAGCCACGAAGGCAGCCAAG----------TGTCATGAAGAAGGCATCACAGAGGCAATTCCAGGCTGTAG-TGGTGAACTTTCCACTCTACAT-CCCCGGGTGCTGTG----------CCCTGTGCCCTGTCTAAGGTAG---CCCTGCGGGTTT-CTATATGTTTAAATTGTCCCCAGCATCAATGATGCTCTCCTGTGGATCCCAAGCCATGGAGATGTCCTGGGACTTTTCATTTTTAGGTACCTAAATTGAATTTCCC s rn3.chr10 65075498 286 + 110733352 ---GAGAACTTAACGTTCACAGAAACAAAGCAAGTGTGACAGCATG-------GGTGGGGGGTTGGATTAAGTCTTCCA------AAGGGAGCAACA----------AGCCATGAAGGAGGCTT--CTGAGGTGATTCAGGGCGACAG-TGAGTGGC--TCAGCTCTGCCCACCCTGGGAGACATA----------CTCAGTTTCCTG---AGGCCAGACATCATAAATGTGT-CTATGT-TTTAGGATATGCCCAGCTTTATCCCTGTTCTCCTGT-------AAACCACACAGCTGTCCTGAGTCTTCTGTATTTTA-ATATCTAAGTTGAATCTCCC s canFam1.chr9 18860760 324 - 53642819 ataaagaaactgaagctcacagaagtgaagcaagt-tcctagcatatggccgagctgggatttgagccccagctgtccagctcTGACAGCAGCCAAGAATTGTAAACTATCGCAAAGAATATCATGCAGAGGCAACCCTAGGCTGCCGTTGGTAAACTCTCC----------TTCTGGACACTGTGATTCCTCTTTTCTTGTACCATGAGTACAGCAG---TATTGTGGTTTTCCTGCATGGTTAGCCTAGGCCCGACTTCAGCTAAGCTCTCCTGCGGATGCCAGGCCATGGGAATGGCTCAGAAATGCCCATATTTGGGCACCTAG--TGTATTTCCT a score=0.0 s hg17.chr17_random 820751 20 + 2618010 AACACACAGAAGCAAGACAG a score=931.0 s hg17.chr17_random 820751 5 + 2618010 AACAC s panTro1.chr19 35043824 5 + 82489036 AACAC s rn3.chr10 65075784 5 + 110733352 GGCAC a score=1428.0 s hg17.chr17_random 820756 15 + 2618010 ACAGAAGCAAGACAG s panTro1.chr19 35043829 15 + 82489036 ACAGAAGCAAGACAG a score=0.0 s hg17.chr17_random 820756 15 + 2618010 ACAGAAGCAAGACAG a score=3534.0 s hg17.chr17_random 820771 12 + 2618010 CCGC-CCTAACAG s panTro1.chr19 35043844 12 + 82489036 CCGC-CCTAACAG s mm5.chr11 43086926 12 - 121648857 CTGT-ACCAACAG s canFam1.chr9 18861084 13 - 53642819 CCGCACCTAGCAG a score=612.0 s hg17.chr17_random 820771 12 + 2618010 CCGC-CCTAACAG s canFam1.chr9 18861084 13 - 53642819 CCGCACCTAGCAG a score=0.0 s hg17.chr17_random 820783 96 + 2618010 ACTCTTGCATGCAGTGAGAGGGAGGCCGCCAGGCCAGCTGTCTCTGTTCAGAAAGACCTGGGGGTCTCCTTGACCATGCGCTCAGGGCTCAGACCC a score=2575.0 s hg17.chr17_random 820783 25 + 2618010 ACTCTTGCATGC-AGTGAGAGGGA-GG s panTro1.chr19 35043856 25 + 82489036 ACTCTTGCCTGC-AGTGAGAGGGA-GG s mm5.chr11 43086938 21 - 121648857 AC-----CCTGT-GGCCAGGGAGACAG s canFam1.chr9 34782380 26 + 53642819 GCTCTTGGATACGAGATAGAGAGA-GG a score=934.0 s hg17.chr17_random 820783 25 + 2618010 ACTCTTGCATGC-AGTGAGAGGGAGG s canFam1.chr9 34782380 26 + 53642819 GCTCTTGGATACGAGATAGAGAGAGG a score=9751.0 s hg17.chr17_random 820808 45 + 2618010 -------CCGCCAGG-----CCAGCTGTCTCTGTTC---AGAAAGACCTGGGGGTCTCCT s panTro1.chr19 35043881 45 + 82489036 -------CCGCCAGG-----CCAGCTGTCTCTGTTC---AGAAAGACCTGGGGGTCTCCT s mm5.chr11 43086959 53 - 121648857 -------CTGCCTGGCAGTTCCAGGTGACTGCCTTCATTAGAAGGGCATGGTGGATTCTT s rn3.chr10 65075789 37 + 110733352 -------TTCCCAGC-----CACGAAGGCGCTGTTC---A--------TCGAGGGCCCTT s canFam1.chr9 34782406 52 + 53642819 CCTAGCAGCCCTAAG-----CCAGCTGTCTCTGTTC---AGAGGGTCCTAGTGGTCTCCT a score=4537.0 s hg17.chr17_random 820853 7 + 2618010 TGACCAT s panTro1.chr19 35018514 7 - 82489036 TGACCAT s mm5.chr11 43087012 7 - 121648857 TGACTAC s rn3.chr10 65075827 7 + 110733352 TGACTAT s canFam1.chr9 34782458 7 + 53642819 GGACCAT a score=4055.0 s hg17.chr17_random 820860 19 + 2618010 GCGCTCAGGGCTCAGA---CCC----- s panTro1.chr19 35018521 19 - 82489036 GCACTCAGGGCTCAGA---CCC----- s mm5.chr11 43087019 22 - 121648857 TGGTTCAGGGCTCAGATAGCCT----- s rn3.chr10 45658108 22 - 110733352 TGGTTCAGAGCTCAAATAGCCC----- s canFam1.chr9 34782465 27 + 53642819 AGACCCCAGGGTCAGAGACCTCCACCC a score=9806.0 s hg17.chr17_random 820879 56 + 2618010 CAACACAAAC-----AAGCCCCGTGTGCTGAAGAGAAGCAGGTCCCTTAGCTGAGGTCCAA s panTro1.chr19 35018540 56 - 82489036 CAACACAAAC-----AAGCCCCGTGTGCTGAAGAGAAGCAGGTCCCTTAGCTGAGGTCCAA s mm5.chr11 43087041 61 - 121648857 CAGCTCAAGCAGGGAAGGCCCAGTAGGGTGCAGAGGGGCTCTTACCTCTGTTGAGGTCTAA s rn3.chr10 45658130 59 - 110733352 CAACTCCCGC-AGGAAAGAGCTGTAGGGTG-GGAGGGGCTGGTACCTTTGTTGAGGTCTAG s canFam1.chr9 18861097 26 - 53642819 CGTCACAAAC---------------------------------ACCCCTGTC--AGTCCAA a score=0.0 s hg17.chr17_random 820935 92 + 2618010 AGGCTGTGGGTCCTGCATGAGCCTGAAGTGGTGCACGTCCCTGGTCACATTGGAGGTGGAGAGCTTGGGGATCTGAATGTGCTGTTTGCCTT a score=42749.0 s hg17.chr17_random 820935 73 + 2618010 AGGCTGTGGGTCCTGCATGAGCCTGAAGTGGTGCACGTCCCTGGTCACATTGGAGGTGGAGAGCTTGGGGATC s panTro1.chr19 35018596 73 - 82489036 AGGCTGTGGGTCCTGCATGAGCCTGAAGTGGTGCACGTCCCTGGTCACATTGGAGGTGGAGAGCTTGGGGATC s mm5.chr11 43087102 73 - 121648857 AGGCTCCGGGCTCTGGATGAGCCTATATTGCTGTGGCTCCCATGTTGCATTGGAAGTGAAGCGTTTCGGGATC s rn3.chr10 45658189 73 - 110733352 AGGCTCTGGGCTCTGGGTGAGCTTGTACTGCTCTGGCTCCCATGTTGCGTTGGAAGTGTAGCGTTTCGGGATC s canFam1.chr9 34782554 73 + 53642819 AGGCTGCGAGTCCTGCACGAGCCTGTATTGGTGTGGGTCCCAGGTCACATTGGAAGTGTAGAGCCTGGGGATC a score=11745.0 s hg17.chr17_random 821008 19 + 2618010 TGAATGTGC---TGTTTGCCTT s panTro1.chr19 35044563 22 + 82489036 TGAATGTGAGCATGTTTGCCTT s mm5.chr11 43087175 19 - 121648857 TGAATGTGA---TGTTTGCTTC s rn3.chr10 45658262 19 - 110733352 TGAATGCAA---TGTTTGCTTC s canFam1.chr9 34782627 19 + 53642819 TGAATGCAG---TGTTTGCCTC a score=1898.0 s hg17.chr17_random 821027 3 + 2618010 GGA s panTro1.chr19 35044585 3 + 82489036 GGA s mm5.chr11 43087194 3 - 121648857 GGA s rn3.chr10 45658281 3 - 110733352 GAA s canFam1.chr9 18861123 3 - 53642819 GGG a score=5695.0 s hg17.chr17_random 821030 30 + 2618010 TCTTTATTTGTGATTCAGAAACAGTGGAAT s panTro1.chr19 35044588 30 + 82489036 TCTTTATTTGTGATTCAGAAACAGTGGAAT s canFam1.chr9 18861126 24 - 53642819 TCTTTATTTGTGATTCAGAAACAC------ a score=15334.0 s hg17.chr17_random 821060 84 + 2618010 -AAAAGGAAAGGAAAGAAAACCTGAATGGCCACCTCAGCAGGATGCTC----CAAGGGTAGTGTCCAGGTGGCACTGACTCAGATATGT s panTro1.chr19 35044618 84 + 82489036 -ACAAGGAAAGGAAAGAAAACCCGAATGGCCACCTCAGCAGGATGCTC----CAAGGGTAGTGTCCAGGTGGCACTGACTCAGACATGT s rn3.chr10 65076074 85 + 110733352 -ATGGGGAAAGGAAACAAATCTAGCA-GGCCCTGTC-TCAGGACACCAAGGGCAAAGGTAGCATGCAGG-GATGCTCAGCCCAGCATAT s canFam1.chr9 18861150 81 - 53642819 AGCAGGGAA---AAAGAAAACCCCAC-TACTGTCACAGAGGGACACCC----CCAGGGTAGTGTCCAGGTAAAACTGACTCAGACACAT a score=100.0 s hg17.chr17_random 821144 1 + 2618010 G s canFam1.chr9 18861231 1 - 53642819 G a score=100.0 s hg17.chr17_random 821144 1 + 2618010 G s panTro1.chr19 35044702 1 + 82489036 G a score=0.0 s hg17.chr17_random 821144 1 + 2618010 G a score=76806.0 s hg17.chr17_random 821145 176 + 2618010 GGGGCTTCCCCCACCCATGCTCAAGAGCCACTTTGCCATTTCACCATCTCTCTGTCCTCCACACCCCTCAGCAGCAAGCACAACAAGAATGTGTTCACCATGAAGCTCAAATCTCAGCAGAATCT--AGAGTCTGAAATCCAAGTAAGGGAAAGTGTAGAGCTTCTTGGATGATGCCC s panTro1.chr19 35044703 176 + 82489036 GGGGCTTCCCCCACCCATGCTCAAGAGCCACTTTGCCATTTCACCATCTCTCTGTCCTCCACACCACTCAGCAGCAAGCACACCAAGAATGTGTTCACCATGAAGCTCAAATCTCAGCAGAATCT--AGAGTCTGAAATCCAAGTAAGGGAAAGTGTAGAGCTTCTCGGATGATGCCC s mm5.chr11 78562113 168 + 121648857 GGGGCTTTCCGCAGCACAGCACAGGAGAT-CTGTACCATT------TCTGTCTGTCTTTC-CAGCCCTCAGCAGCATCCATGCAAAGAACGTGTTTACCATGAGGCTGAAATCCCAGCAGAATCTGCAGAGTGAAAAGTCCAGGTAAGG--ATGGGCAGGGATGCTTAGCTGGTACCC s rn3.chr10 65076159 154 + 110733352 GGGGTTTCCCCCAGCACAGCATAGGGGCT-CTG-ACCATC------TCTGTCTGTCTCCT-CAGCTCTCAGCAGCATCCACGCCAAGAACGTGTTCACCATGAGGCTGAAATCCCTCCAGAATCTGCAGAGTGAGAAGTCCAGGTAAGG--ATG-------------GGCTGGTACAC s canFam1.chr9 18861232 176 - 53642819 GAAGCTACCCCCACCAGCACTTAAGAGCCACTTTTTCACTTCATCATC--TCTGTCTCCCACAGCCCTCAGCAGAATGCATGCCAAGAACGTGTTCACCCTGAGGCTCAAATCACAACGGAATCTACAGAGTCCAAAATCCAGGTAGGGGAGACTACCGGGCTGCTTGGGTGATGTTC a score=69428.0 s hg17.chr17_random 821321 399 + 2618010 TGTCAATTTTATTTT----------AACGAATGAAAGACCAGAAGAAGTCAGTCTT-GAAAGGAGAGGACAGGAGCATCTGC-TGGCATTAGCAGCCGTGCCATC-GTAGGACCGACTCACCTGG----ACCCGCGGCCACCTGTGCTTTTACATCTAGTCTTGGTTAACCATGGGCCACTTTTCCAGCTTGGAAACTAAGCATATGCTCCACTTCCTCTCCTTCCTCATTGAACTCTTTCACTAAAAGAACAGTGCAAGAGAGACTTAAACTGTTTGCCTCATTCTTAAGACCTTTCAGGAAAAGTGTT-GGCAGGGAAGGAAATCTCCCAGCTCTGGGAAA-CAGTCTTGTGGATTATCTGC----TGGTTTCAT-----TGATCTGTGCTGTCC-TCC--CTGCATTCATTAGGAAAACTGGCCTTG s panTro1.chr19 35044879 400 + 82489036 TGTCAATTTTATTTT----------AACGAATGAAAGACCAGAAGAAGTCAGTCTTTGAAAGGAGAGGACAGGAGCATCTGC-TGGCATTAGCAGCCATGCCATC-GTAGGACCGGCTCACCTGG----ACCCGCGGCCACCTGTGCTTTTACAACTAGGCTTGGTTAACCATGGGCCACTTTTCCAGCTTGGAAACTAAGCATATGCTCCACTTCCTCTCCTTCCTCATTGAACTCTTTCACTAAAAGAACAGTGCGAGAGAGACTTAAACTGTTTGCCTCATTCTTAAGAACTTTCAGGAAAAGTGTT-GGCAGGGAAGGAAATTTCCCAGCTCTGGGAAA-CAGTCTTGTGGATTATCTGC----TGGTTTCAT-----TGATCTGTGCTGTCC-TCC--CTGCATTCATTAGGAAAACTGGCCTTG s rn3.chr10 65076313 341 + 110733352 ----AGGATTGCTCTGG--------AATGCACAAAGAACCAGAGACAGTCAGTCTGTAGGCGGGGAGGG------------------------AGACAGGCCCCC-CAAGG---GGATCACTGTG--------GGGACCACCTTCTCT------GCTAGTC-----------TGTGCC-TTTGTCTGGTTTGGAAGCTGGATGTCTGCCTCACTGGCCCTTCCTCCTCTCTGAACTCT-------------CAGACCAGGGGACACGCAGAGCATCTG----AGTCTTCAGGCCTTTTGTG---GTTGTTAGGCAAGGGTGGGGATTTCCCAGCCAGGTGGAG-GAGGGTTGTGAGCGATCCGATCCGTGATTTTATCTGCATGGTCCCTCCTCTCCTTTC--CTCCTATCCTGGGGGAAAGTAGCCTCA s canFam1.chr9 18861408 408 - 53642819 TGCCGGTTTAATTTAAGACAAAACAAAACAAAAAAAGACCAGAGCCAGTCAGTGTTTGAAAGGAGAGAG-------GTGTACACAGCATTAGCGATGATGCCATCTGTAGGACCAGCTTGGCTGGTAACCCCTGTGACCTCCAGTGCCTTTAAGTTTGGTCTCCATTAACCATACACTGGTTTTCCAGCTTGAGAACTAGGCACCTGCTTTACCACCTGCCCTTTGTCACTAAACCCTTTCACCAAAGGTGGAGAGCAAGAGAAACTCAAACCATTTG----GCTCTTAAGAACTTTTAGGAAAAATTTT-GGCAGGTAAGGACATTTCCCCACCAGGAGAAATGGGTGTTATGCATTCCTTGT----GGGTTTTGT-----TCATTTGTGCTGTCC-CCCTGCCCCAATCATTAGGAAAACCAGCTTTG a score=38734.0 s hg17.chr17_random 821720 186 + 2618010 GTTCAAATAAGAACAGGATTTGTCCTGGTGACAGAGAAAGGTTTCTTCTGATGTCCATATATCTCCGA-GGGGGATGCTTTCTCCAGGCAGAGGCTGTGGCCAAGCGAT-CGGGGGGCTCAGAGG-GCTGCTGGGAAGGGGTGGGCCC--CTCTCTCCCCAGAGGGAAACTC-----CTGG---------GGACCTCTCGAGCAC s panTro1.chr19 35045279 186 + 82489036 GTTCAAATAAGAACAGGATTTGTCCTGGTGACAGAGAAAGGTTTCTCCTGATGTCCATATATCTCCGA-GGGGGATGCTTTCTCCAGGCAGAGGCTGTGGCCAAGCGAT-CGGGGGGCTCAGAGG-GCTGCTGGGAAGGGGTGGGACC--CTCTCTCCCCAGAGGGAAACTC-----CTGG---------GGACCTCTCGAGCAC s rn3.chr10 65076654 167 + 110733352 GTTCCAGTGAGAACAGGATTTGTTTTGGAGATAAAGAAGGGCTACCTCTAGTGTCCACACA-CTCTGA-ACGAGATGC-TCCTTGTGGCAAAAA-TGTGGCCAAGTGCTCCATGATACCCACA----CTTCTAGGGAAGGCTGTAGCC------------------AAACTCC---TCTGG---------GAAACTCTGGAGCAC s canFam1.chr9 18862136 203 - 53642819 GTTCTAATGAGAGCCAGATTTGTGCTGGGGACAAGGAAGGGTTTGTCCTAATGGCCACTGATCTCCCAGGGGGGATGCTCTCTTTAGATGGAGGGTGTAGTCAAGC-CT-GGCTGGGCTCGGGAGTGCTGCACCGGGAGGCTGCGGCCCACCCTTTTTCCACAGAGAAGCCCCAGGCCTGGTTGGCCACAGGCCCTCTTGAGCAC a score=1345.0 s hg17.chr17_random 821906 6 + 2618010 CCCTGC s panTro1.chr19 35045465 6 + 82489036 CCCTGC s canFam1.chr9 18862339 6 - 53642819 CCCAGC a score=291.0 s hg17.chr17_random 821912 3 + 2618010 CCA s panTro1.chr19 35045471 3 + 82489036 CCA a score=1692.0 s hg17.chr17_random 821915 6 + 2618010 tccttt s panTro1.chr19 35045474 6 + 82489036 tccttt s canFam1.chr9 34785382 6 + 53642819 tccttt a score=28570.0 s hg17.chr17_random 821921 171 + 2618010 aaacataaattcataaatacaaacaagtaggcc-attca--cagaaatatataaaa----------tatgtcataggacgggtggcactctcatatggcaataattatgacaggggccggcaaatgacCTGAGTGACCCGGAGTGACCTGAGCACTGACTCCCAAATGCCCTCCATAGGATGTT s panTro1.chr19 35045480 171 + 82489036 aaacataaattcataaatacaaacaagtaggcc-attca--cagaaatatataaaa----------tatgtcataggacgggtggcactctcatatggcaataattatgataggggccggcaaatgacCTGAGTGACCCGGAGTGACCTGAGCACTGACTCCCAAATGCCCTCCATAGGATGTT s rn3.chr10 45660890 143 - 110733352 AAACATAAATAAATAAATGTAATTAATCACCTC-AAGTAATCTGACATATATAAAGAAGAGTTGGTCAAGTCACAGGAAAG-------CCCTGTGTGCCAATG---------------GGGAAATGGCTTAAG-GACCCAGAGTGGCCCGAGT----AATTCCAGGT------CACA------- s canFam1.chr9 34785388 169 + 53642819 agacataaatttttgagtttaaaaaggtgagtcaattta--cttgaaaatataaaa----------tatgccattggaaaggcatcacgtacatatggtgagaattacaaagaaggcaggtaaacg--CTGGC-AGCCCAGAGTGATCTGAGCACTCATTTCCAAATGTCCTCCTTAGGACATG a score=4684.0 s hg17.chr17_random 822092 8 + 2618010 CTGCATCC s panTro1.chr19 35045651 8 + 82489036 CTGCATCC s mm5.chr11 43090264 8 - 121648857 CTGAGTCC s rn3.chr10 45661033 8 - 110733352 CCGAGTCC s canFam1.chr9 34785557 8 + 53642819 CTAAATCC a score=109920.0 s hg17.chr17_random 822100 262 + 2618010 CCGAGACCCTTTCCTGGGTCCTCCTGGG----------CCCTACCACCC----CCTAGACCATCCAGACCTCAGGTCATCCCCCTGTCTGTTGACAGAGTAGTCTCCGTTCCTGAATGTGCTGGTCACCAGCAACAGCAGCTGCTCCTCCTCCGGGAAGCTCAGCCTATACTTCTACATGCAGAGAACCTGGACGGCACCC-AGGTGGACCTAAGCCTTCAGCTCCCAGTAGACGCTCTGGG--TTTCCTACCCTG--CCCAGACACTCTGGGCTTCCCCC s panTro1.chr19 35019775 264 - 82489036 CCGAGACCCTTTCCTGGGTCCTCCTGGG----------CCCTACCACCC----CCTAGACCATCCAGACCTCAGGTCACCCCCCTGTCTGTTGACAGAGTAGTCTCCGTTCCTGAATGTGCTGGTCACCAGCAACAGCAGCTGCTCCTCCTCCAGGAAGCTCAGCCTATACTTCTACATGCAGAGAACCTGGACGGCACCC-AGGTGGACCTAAGCCTTCAGCTCCCAGTAGACACTCTGGGCTTTCCCTACCCTG--CCCAGACACTCTGGGCTTCCCCC s mm5.chr11 43090272 232 - 121648857 CCCGGACCCTTTCCTTGGTCCTCCCAAG----------CCTCTCTG-----------------CCGAGTCTCCGGCCACCCACCTGCCCATTGCTGGGACAGTCTCCATTCCCAAATGTGCTTGTCACCACCAGCAGTAGTTGCTCCTCTTCCAAGGTGCTTGCCTTATACTGGTCCATGCAGACAACCTGTGTGACAACC--GTTGAACATCAGCCCCCAGCTCCCAA---------GGGG--CCGCTTACACT---------CACTCCAGACTCCTTCC s rn3.chr10 45661041 243 - 110733352 CCTGGGCCCTTTTCTTGGTCCTCCTAAG----------CCCCTCTG-CC----CCCAGATGAGCAGTGTCCCT-GCTACCTACCTGCCCATTGCTGGGGCAGTCTCCATTGCCAAATGTGCTTGTCACCACCAGCAGTAGTTGTTCCTCTTCCAAGGTGTTTGCCTTATACTGTTCCATGCAGACAACCTGTGTGGCACAC--CATGGATGTCAGCCCTCAGCTCCCAG---------GGGG--TCCCTTACACT---------CACCCCAAGCTCCTTCC s canFam1.chr9 34785565 271 + 53642819 -CCAGATCCTTTCCTTGGCTCCCTTGGGGCCTGGCATCCCCCACAACCCTGCACCCAGACCA-CTGGGCCCCAGGCCACCCACCTCTCCATTGCCAGGGGAGTCTCCGTTCCCAAACGTGCTGGTCACCACCAACAGTAGCTGCTCCTCCTCCAGGTGGCTCAGCTTGTACTCGTCCATGCAGAGAACCTGCAAGGCCCCGGGGGTGGACATCAGCCCTGTGTTCCCAG------GCCGAGG--CCCTCTATGCCATCTCCAGATGCCCTGTGCTTCCTCC a score=33998.0 s hg17.chr17_random 822362 251 + 2618010 CACACCT------CCCCTCGGCCGGGGCTCCTGTGTGCATCTGTCTCTCCCAGTGCCCAGCACAGGCGTGGAACGGAAGAGGTG-------------------AATGGACCGATTTGAACACAtcatcctggattctccgttccctctcaagccctgcagctaacccatcggcaagccctggaggctctgcctccaaaatcctgccta-tcccatgtgcaaacgcctctcaccatgtccactgctaTTTGCAGTTCTGTGTGTGTGGAAATACTTCC s panTro1.chr19 35020039 250 - 82489036 CACACCT------CCCCTCGGCCGGGGCTCCTGTGCGCATCTGTCTCTCCCAGTGCCCAGCACAGGCGTGGAATGGAAGGGATG-------------------AATGGACCGATGTGAACACAtcatcctggattctcc-ttccctctcgagccctgcagctaacccatcggcaagccctggggcctctgcctccaaaatcctgccta-tcccatgtgcaaacgcctctcaccatgtccactgctaTTTGCAGTTCTGTGTGTGTGGAAATACTTCC s canFam1.chr9 34785836 260 + 53642819 CCAACCCAGGAGACCCCTTATCA------CCTGTTTCCCCCCACCCCGCCCA-CGCCCAGCACCAGTGTGGTACAGGGGTGAGGGTTCTGTGAATCCCAGTCAAATAAACCTATATGAATACCTCGCTCCTCATCCTCCTACCCCACTCAAGCCCCAACACCAACACTTCCACAAGCCCTGGAGGGCTTGCCTTCAAAATCCTGCTAAGTCCCAAATGAAAACACT----------TCCACTGCTACTCTGAATTCGGAGTGTGTGGACGTATTTTC a score=181589.0 s hg17.chr17_random 822613 1997 + 2618010 ACAAATTTGGAATGAACAGGTCACAGCTGTGCCTGGAGGGAATGGCCAGGGAAATGTGCCCTCGCCTTGCTGTTCTATCCAGGCCCACCCAGCTGAGGATGGGGGACCTGCCACCACTCTCCTGGCAGTTCCGGACTCCTGGGAACCGGCAGGTGA-GGACCCAAGAGTGTTTTCAGTGACCCGGCTGACCTGGTCATCCGTCAGTCCCACCTTGGCCTAGGCCTCTATACAGCACAGATCACAGCTCATTCCATCCTGGCATTACACTGGCCTGTGCCCTGTCCTCAGGGTCACATCCGTCTCCCA-GAAGCCGTGCAACCCTGGAAAACCCAGGTCTAACAGTCAGGTTCCTCCTCCGTGCATTAACAATGGAGTTGACGCCTGCTTTGCGGCACGCTGGGAGGGGAGAGGGAGGTGTATGCTGGAGAGCTCCCCAGGGGCAAGGCCTGGCTCTGCGTCACCCACTGTCAGATCCTGAGAGCCTGGGGCTGGCCCAGCACGTGGCCACCGTTCCCTAAGAGTTGGATTTCATCCCTCAGTGCTGAAGGCAGGGGATAGAGCTTAGACAGACCCCC-TGCGTCCTGTCTTCTTTATCTACAGCTTTCTCATCCTTGCCCCTTTCACGTGCACCCGGCAGAGCAGGTGTTCACTGAGCTTGAGCAAAATTCAAGCTAGAGCAGCTGATGGATCTTGAGGCCTAGATTCACTGTCAAAGTGTTTCTCAAACGGTGCTCTCCAGAACACCAAGGAAAACTCATTGACTGTGTAAGTCTGAAAATCCCTGCCCACCGGTCTACCTTTGTGTATGAGCAATCAGCTCTACCATTCAGCCCAGGTGTGTGTTTGCTGGACCATGTggaggaagctgaagagacgtgagctgaaggcagagggtgagtccaaggtgggatcttgggacaggtacgagaagttaggcaaaaatgggataattctagccttcataaccttagataatagttcacattattatttagttaatagaactgtacccacattaaatttcttaaatttttttaagagataaagtctcactctgtcacccaggctggagtgcagtggtgcaatcatggctcactgcttcctggaactcgtgggctccagcaatcctcctgcctcagcctcctgactaggtgggactataggcacacgccaccatgcctggctaatttctttgacttttctctagagaccgggtccacctaggtttcccaggctggtctcagacttctagactcaagtgaacctgaacctcccgcctcgacctctcaaattgctgggattacaggtgtgagccaccacacccggcctaaatttcttatgtgccatgggactgcaaaacatcattattaggggcagctggatggaaggtataggaggatactatagtgccttttcaatatttctgtc-taaaatctaaaatcatttcaacaggaaacatttatttcaaaaCATGAAGGTGGTTATCCTTCCATGAGTTTGAAGTACAAAGGCAGGCTCACGGTGTCGTCAGAATTCAGAACGATGGTCGTGGGGCTGGGGGTGCTGGGAGGGGCTGGGCATGGTTGGCTTTGTGATCTGGGGTCTGGTGTGTTCCATCTCTGAATCTCTCTCGAGCTGCACTCTTTCTTAATACATTTTCATAAGTTTAACCAAAAATAAAACGAGGATGCGAAGCTTGCTTGGGTTGTTAAGCCTAGGGAAATTATCCAGCCATGAGCCCTGGCCCAGATGCTTCTAGAAGCCTGGAGGGAACTGagaactttccaagtggaggccgcagaggcaaggccct-gaggtgggagcacactgctgttcgTCCCTAGCTCTGAAGGGGGTGCCCTGGTCGGAATCAGTGCTGG-------------------------------------------GTGCAGCGAAAGCCGATCTCACCCGCTCCGCAGGGTGTTCAGCCTGCCAGCAGGGGGCCAGCTGGTCCTCCTGGGATATGGCACGGACCCAGCAGCTCTGTCTGAAATCATAATGGC s panTro1.chr19 35020289 2045 - 82489036 ACAAATTTGGAATGAACAGGTCACAGCTGTGCCTGGAGGGAACGGCCAGGGAAATGTGCCCTCACCTTGCTGTTCTATCCAGGCCCACCCAGCTGAGGATGGGGGACCTGCCACCACTCTCCTGGCAGTTCCGGACTCCTGGGAACCGGCAGGTGATGGACCCAAGAGTGTTTTCAGTGACCCGGCTGACCTGGTCATCCGTCAGTCCCACCTTGGCCTAGGCCTCTATGCAGCACAGATCACAGCTCATTCCATCCTGGCATTACACTGGCCTGTGCCCTGTCCTCAGGGTCACATCCGTCTCCCAGGAAGCCGTGCAACCCTGGAAAACCCAGGTCTAACAGTCAGGTTCCTCCTCTGTGCATTAACAATGGCGTTGACGCCTGCTTTGCGGGACGCTGGGAGGGGAGAGGGAGGTGTATGCTGGAGAGCTCCCCAGGGGCAAGGCCTGGCTCTGCGTCACTCACTGTCAGATCCTGAGAGCCTGGGGCTGGCCCAGCACATGGCCATCATTCCCTAAGAGTTGGATTTCATCCCTCAGTGCTGAAGGCAGGGGATAGAGCTTAGACAGACCCCCTTGCGTCCTGTCTTCTTTATCTACAGCTTACTCATCCTTGCCCCTTTCACGTGCACCCGGCAGAGCAGGTGTTCACTGAGCTTGAGCAAAATTCAAGCTAGAGCAGCTGATGGATCTTGAGGCCTAGATTCACTGTCAAAGTGTTTCTCAAACGGTGCTCTCCAGAACACCAAGGAAAACTCATTTACTGTATAAGTTTGAAAATCCCTGCCCACCGGTCTACCTTTGTGTATGAGCAATCAGCTCTACCATTCAGCCCAGGTGTGTGTTTGCTGGACCATGTggaggaagctgaagagacatgagctgaaggcagagggtgagtccaaggtgggatcttgggacaggtacgagaagttaggcaaaaatgggataattctagccttcataaccttagataatagttcacattattatttagttaatagaattgtacccacattacatttcttaaatttttttaagagataaagtctcactctgtcacccaggctggagtgcagtggtgcaatcatggctcactgcttcctggaactcgtgggctccagcaatcctcctgcctcagcctcctgactaggtgggactataggcacacgccaccatgcctggctaatttctttgacttttctctagagaccgggtccacctaggtttcccaggctggtctcagacttctagactcaagtgaacctgaatctcccgcctcgacctctcaaattgctgggattacaggtatgagccaccacacccggcctaaatttcttatgtgccatgggactgcaaaacatcattattaggggcagctggatggaaggtataggaggacactatagtgccttttcaatatttctgtcgtaaaatctaaaatcatttcaacaggaaacatttatttcaaaaCGTGAAGGTGGTTATCCTTCCATGAGTTTAAAGTACAAAGGCAGGCTCACGGTGTCGTCAGAATTCAGAATGATGGTCGTGGGGCTGGGGGTGTTGGGAGGGGCTGGGCATGGTTGGCTTTGTGATCTGGAGTCTGGTGTGCTCCATCTCTGAATGTCTCTCGAGCTGCACTCTTTCTTAATACATTCTCATAAGTTTAACAAAAAATAAAACGAGGAGGCGAAGCTTGCTTGGGTTGTTAAGCCTAGGGAAATTATCCAGCCATGAGCCCTGGCCCAGATGCTTCTAGAAGCCTGGAGGGAACTGAGAACTTTCCAAGTGGAGGCCGCAGAGGCAAGGCCCTAGAGGTGGGAGCACACTGCTGTTCGTCCCTAGCTCTGAAGGGGGTGCCCTGCTCGGAATCAGTGCTGGGTGCACTGCAGGGCCGGGAAGTCCATGCCCACGTTGTGGCTCAGTGCAGTGCAAGCCGATCTCACCCGCTCCGCAGGGTGTTTAGCCTGCCAGCAGGTGGCCGGCTGGTCCTCCTGGGATATGGCACGGACCCAGCAGCTCTGTCTGAAATCATAACGGC a score=9628.0 s hg17.chr17_random 824610 62 + 2618010 GGAACCAAGGGCCCTCTACGTCCAGGTCCGTTGGGAGGCGGGGCATGGAGTTCCACTGCAGG s panTro1.chr19 35022334 62 - 82489036 GGAACCAAGGGTCCCCTACGTCCAGGTCCGTTGGGAGGCGGGGCATGGAGTTCCACTGCAGG s canFam1.chr15 11473429 62 + 67237905 GGGGCCACCTGCCTGCACCGTCTTGTTGCACTGGGAGGATGGGGAGGGAGTTCCATCGCTGG a score=11991.0 s hg17.chr17_random 824672 125 + 2618010 AATCTCCAGGAACCCTGAGGTCCTCCCTGAGCCAGGGCCGGGCTGGGCACACCCTGAGTGCCCACAGGGTAGGTGTCTTCCCGGACAGCCCCACCAGGACAGGGTGTGGAAGAACGAGGTGCCCG s panTro1.chr19 35022396 125 - 82489036 AATCTCCAGGAACCTTGAGGTCCTCCCTGAGCCAGGGCCGGGCTGGGCACACCCTGAGTGCCCACAGGGTAGGTGTCTTCCCGGACAGCCCCACCAGGACAGGGTGTGGAAGAACGAGGTGCCCG a score=25521.0 s hg17.chr17_random 824797 179 + 2618010 TGGCGGGGAAGCTGACCAAATGGGCCGCGGGAACCGGGCTGGTGGGCCTGGAGGGGCCTGCCTGTCCCCCTTGCAGAGGGTCTTCCCGCCACGTGAAGCCGGCACAGGCCTGGATGCCGACGACCCTTG------------------------------CTCGGGTTTGGCTGAAAGGAAAACAGACGCGGTCAGCATCTCCAGTGAGC s panTro1.chr19 35022521 179 - 82489036 TGGCGGGGAAGCTGACCACATGGGCTGCGGGAACCGGGCTGGTGGGCCTGGAGGGGCCTGCCTGTCCCCCTTGCAGAGGGTCTTCCCGCCACGTGAAGCCGGCACAGGCCTGGATGCCGACGACCCTTG------------------------------CTCGGGTTTGGCTGAAAGGAAAACAGACGCGGTCAGCATCTCCAGTGAGC s canFam1.chr15 11473513 204 + 67237905 TGGCCGGGAGGGGGTCC----GGGCGGCTCAGGCTGGGTGGCTGGGCCCGGGGAGGCCGGCTCCTCCACCCTGGGGGGTGTCTCAGAGGCCGGAGAAGAGAGGAGAGGCCCGGACACCGGGGACACTTGCTCCAGGCCCAGGGGCCTCGTGGGGAACTCCTCAGGTCCTGCTGGAAAG-AGGCCGACGGGGTCAGCGTCTCCAGCAGGC a score=1264.0 s hg17.chr17_random 824976 13 + 2618010 CCACGCAGGCCTT s panTro1.chr19 35022700 13 - 82489036 CCACGCAGGCCTT a score=1960.0 s hg17.chr17_random 825093 16 + 2618010 CCCACCCCCACCCCAC s rn3.chr10 63153150 16 + 110733352 CCAACCCCAGCCCCTA s canFam1.chr9 15589819 16 - 53642819 CCCTCCCCCATCCCGC a score=1805.0 s hg17.chr17_random 825109 22 + 2618010 ACAAACCGATTCCTTGCTGGAC s panTro1.chr19_random 2818458 22 + 57627672 ACAAACCAATTCCTTGCTGGAC s rn3.chr10 63153166 15 + 110733352 GCAAATTCAT-------GGGAC s canFam1.chr9 15589835 17 - 53642819 GCTAACCCCTCC-----CGAAC a score=0.0 s hg17.chr17_random 825131 11 + 2618010 TGCGACCTCTT a score=5264.0 s hg17.chr17_random 825131 11 + 2618010 TGCGACCTCTT s panTro1.chr19_random 2818480 11 + 57627672 TGCGACCTCTT s mm5.chr11 75407376 11 + 121648857 TGTGACTTCTT s rn3.chr10 63153187 11 + 110733352 TGTGACTTCTT a score=241971.0 s hg17.chr17_random 825142 606 + 2618010 CCGGCCTCGGTTTCCCAGCCAGTCCCGGCCGGGCCGGA-CAGGCACCCTCGGGGGCGGGAAAAGGTGCCAGAGCGCCCGCCGGCCGGGCCTTAGCCTCGGGACTCCGGCGCTTGCCTGCTCCATGGGGCTCGGGGCTCGGGGCTCAGTCCGGGAGGAGG-------------GGGGTCCTTTCTGCTCCAGGACAGCTGGCGCGACCGGTGGGCAAAGGTCCGCGGCCCTGGAGAACGCCACGGCGGGGTCCACGGACACCAGAGGAGGAACCGCCAAGGTTTTTCCAAAGGACAAGCGGCCCGGCCCGGCGGTCCTCCTAGTTC--TTCGG-CCCGCGCGCCACC-----------------CGGGAGGCCGAACCGGCCCCAG----CCCGGGGCCCCCTCTCCAGCCCGCCCCAG------------CCCCGACCCTCCG--------CTGCGGG---GCCCTCACGGAGCGG--CCGGCCAGCGGGGAGCGACTAGGCTGCCGGCTGCAAGGCGTGTCTCCCCGGGACGCAGCTCCGCCCTTCCCAGGAACACAAGCGGCTGCCCGCGCCTGAGCTCCCAAAGGGCTGGCGGGCAGGGAGCGGGCGCCGCGCCGGCTCCCCGGAGCCCA------GCCCCGGAAACGGGACACCCACAGCGGGTGCCCCCA s panTro1.chr19_random 2818491 606 + 57627672 CCGGCCTCGGTTTCCCAGCCAGTCCCGGCCGGGCCGGA-CAGGCACCCTCGGGGGCGGGAAAAGGTGCCAGAGCGCCCGCCGGCCGGGCCTTAGCCCCGGGACTCCGGCGCTTGCCTGCTCCGTGGGGCTCGGGGCTCGGGGCTCGGTCCGGGAGGAGG-------------GGGGTCCTTTCTGCTCCAGGACAGCTGGCGCGACCGGTGGGCAAAGGTCCGCGGCCCTGGAGAACGCCACGGCGGGGTCCACGGACACCAGAGGAGGAACCGCCAAGGTTTTTCCAAAGGACAAGCGGCCCGGCCCGGCGGTCCTCCTAGTTC--TTCGG-CCCGCGCGCCACC-----------------CGGGAGGCCGAACCGGCCCCAG----CCCGGGGCCCCCTCTCCAGCCCGCCCCAG------------CCCCGACCCTCCG--------CTGCGGG---GCCCTCACGGAGCGG--CCGGCCAGCGGGGAGCGACTAGGCTGCCGGCTGCAAGGCGTGTCTCCCCGGGACGCAGCTCCGCCCTTCCCAGGAACACAAGCGGCTGCCCGCGCCTGAGCTCCCAAAGGGCTGGCGGGCAGGGAGCGGGCGCCGCGCCGGCTCCCCGGAGCCCA------GCCCCGGAAACGGGACACCCACAGCGGGTGCCCCCA s mm5.chr11 75407387 583 + 121648857 CCCTCCTTGGCTTCCTGGATGGTCCCTGGTGGGCAGGGTTAGGCATCCTCAGGGACCACACAAGCCACCAGGA-----GAGGTCCTGGCCTGGCTCGGGAGACCCTGGTGTCTGTTGTCTCCCT--------------GGGGCTGAGTCCGAGAGGAGGG-GGCGCGG--CTGGGGACCCTCCTGA-CCGGGGAAGCCGGCGTAACAGGTGGGCGAAGGTCCACGGCCAGGG--------CCGGCGGGGTCCGCAGATGCGGGAGGAGGAACCGCCAAGGTTTTTCCAAAGGACAAG-----CGGCCCCGCGGTCCT----GGTT--CTCGG-CCCGCGCACCA-------------------------GCAGAGCCG----TGG----CGCGGTGCGGGCCGCCGGGCCCGCCCCAGCTACCGCAGGGTCCCCAGCTCTCCGGGTGGACACCCCGGGACAGCCCGCACAGGGCTC--TGGG---GCCTGGCGCAACCGCGCGGCCCGCAGCAACTGGTGTCTCTCCGGGGCGCAGCTCCGCCCTTCCCGGGAACAAAAGCCGCCGCCCGCGCAGGAGCTCCT----GGCGCGCGGGCCGAGAAGGGGTGCGGGGCGCGCCTCGGGGAGCGGA------GGCCTGGAAACGGGGCGCCC-CAGAGGACGCCCCCA s rn3.chr10 63153198 583 + 110733352 TCCTCCTTTGCTTTCTGGATGGTCCCTGGTGGGCCGGATCAGGCACCCTTAGGGACCACACAAGACACCAGAA-----GAGGTCCTGGCCTGGCTCAGGAGACCCTGTTGTCTGTTGTCTCCCT--------------GGGGCTGAGTCCGTGAGGAGG---GGGTGG--CTAGGGACATTCCTGA-TTAGGGAAGCCGGCGTAACAGGTGGGCGAAGGTCCACGGCCAGGG--------CCAGCGGGGTCCGCGGATGCGGGAAGAGGAACCGCCAAGGTTTTTCCAAAGGACAAG-----CAGCCCCATGGTCCT----GGTC--CTCGGCCCCGCGCACCAGCAGAGCCGCGGCGCGGTATGGGCTGCGGGGCCCGCCCCAGTTACCGCAGGG-----TCCCCAGCTCTCCAGGT------------GGCCA----------------CCTCGGGACTGCCCGCACAGGGCTC--TGGG---GCCGGGAGGGACCGCGCGGCCCGCAGCAACTGGTGTCTCTCCGGGGCGCAGCTCCGCCCTTCCCGGGAACAAAAGCCGCCGCCCGCGCTGGAGCTCCC----GGCGCGCGGGCCGAGAAGGAGTGCGGGGCGCGCCCCGGGGAGCGGA------GGCCTGGAGACGGGGCGCCCCCAGAGGACGCCCCCA s canFam1.chr9 15589852 599 - 53642819 CCGGCCTCGGTTTCCCCTCCAGTCCCGGGTCCCGCGGGGCAGGCGCTCTCGGAGACCCGAAAGGCAAGCAgcg--cccgccggcccggcctcgccccgggggccccggcgctcgcccactgccc-------ggggcccggggcTCAGCCCGGAGAGAGGGCGGCGCGGGCTGGGGGCCCTTCCCGGCCTTGGGAAGCGGGCGTAACAGGTGGGCGAAGGTCGGCGGCC-GGGACAgcgccgcggcggggtccgcgggcgcgggAGGTGGCTCGGCCAAGGGTTTTCCAGAGGATGAg-----cggccccgcggccccccgtgctcggcccgg-accgggagccgct---------gcgctctgcgggccgccgggcccactcggg-------agggaggcccgcccggc---ccccgc------------ccccgcccctcgg--------cggcgag---gccggcccgcagcggctccgg---gcggggag-gaccgcgcggcccgcAGCAACTGGTGTCTCCCCTGGGCGCAGCTCCGCCCTTCCCGGGAACAAAAGCCGCCGCCCGCGGCGGAACTccc----cgccggcgggccgagagggggcgcggcgc--------gggAGCGCATATCCGGGCCCGGAAAC-GGACGCTT-CAGCGGGCGCCCCAA a score=95040.0 s hg17.chr17_random 825748 351 + 2618010 AACTTCCCACCTCTCTGGTCCGGTCTGGGGAGGGGTCGGGGCCGGGGCCGGTGGGC------AG-GGCGCGGAGAGCTCATGGAGCTCTTAGGGTCTGCGGCCCCGCGGCTGGGGGTTATGCCA--AGGGAGAAAGCGACGAC---------GCGATGGGG--AGGGACCGAGAGCACCCCGAAGCCGGGACCATCAAGCCGGAGCCAGTGGAGGGGCGCGAAGTCGGCGAGT--------TGGAAACTAACTGCAATCGTCC-ACTCGTAGCCTTCGGCGTCCGGCTCGTCCTCTGGCGGCTTGGCGGGCGGCTG-CACAGGGCT-------------GGACCTGTGTTG------------------------GATCCTCAGGCTCCGAAGATATGGTCCCCATCCTCGTCGTCGT s panTro1.chr19_random 2819097 351 + 57627672 AACTTCCCACCTCTCTGGTCCGGTCTGGGGAGGGGTCGGGGCCGGGGCCGGTGGGC------AG-GGCGCGGAGAGCTCATGGAGCTCTTAGGGTCTGCGGCCTGGCGGCTGGGGGTTATGCCA--AGGGAGAAAGCGACGAC---------GCGATGGGG--AGGGACCGAGAGCACCCCGAAGCCGGGACCATCAAGCCGGAGCCAGTGGAGGGGCGCGAAGTCGGCGAGT--------TGGAAACTAACTGCAATCGTCC-ACTCGTAGCCTTCGGCGTCCGGCTCGTCCTCTGGCGGCTTGGCGGGCGGCTG-CACAGGGCT-------------GGACCTGTGTTG------------------------GATCCTCAGGCTCCGAAGATATGGTCCCCATCCTCGTCGTCGT s mm5.chr11 75407970 246 + 121648857 AACTTCCCAGCTCTCCCGTGCGGTT--------GTTCCGGGCGGCGGC-----------------GGCGC----------------------------TTGCCCTGCGG-----------------------------------------------------------------GGACCCGGGTGCGGGGA---------------------GGGGGCGAGCGGCCGGCGACT--------GGGAAACTTACTGCAGTCGTCTGACTCGTAGCCGTCGACGTCCGGCTCGTCCTCGGGGGGCTTGGCGGGCGGCCT-CGCGGGGCTGGGGCCGGGGCTGGGGCCTGGGCTG------------------------GCTCCGTAGGCTCCGAAGAGCTGGTCCACATCTTCGTCGTCGT s rn3.chr10 63153781 246 + 110733352 AACTTCCCAGCTCTTGTGTGCAGGT-------------------GTACTGGGCGGC------GGCGGCGC----------------------------TTGCCCTGCAG-----------------------------------------------------------------GGACCCGGGTGCTGGGA---------------------GGGGGCGCGCGGCCGGCGACT--------GGGAAACTTACTGCAGTCGTCTGACTCGTAGCCGTCGGCGTCCGGTTCGTCCTCGGGGGGCTTGGCCGGCGGCCT-CACGGGGCTGGGTCCGGGGCTGGGGCCTGGGCTG------------------------GCACCGTAGGCTCCGAAGAGCTGGTCCACATCTTCGTCGTCGT s canFam1.chr9 15590556 381 - 53642819 AACTTCCCACCTCTCCGTACgggcccggggaggggtcggggttgggtccgcagggtttgcgaag-ggcgcgcggagcgggcggggg------------cggccccgcgggagtgggtgccggcgacagggagcgcgcggaggccgggcgcgggcggcgaggtcggggtcggggagcgcgcggaggccgggc-----------cggggggggggggggggcggggCCCCCGGCCTCTGCCGGGGGAAACTTTTTGGAGGCGTCGGACTGGTAACCGTCGGGGTCCGGGTTTTCCTCCGGggggttgggggggggccgccccggggcg-------------gggcccgggccggggcccgggccggggccggggcccgggccgTAGGATCCGAAGAGCTGGTCGACGTCCTCGTCGTCGT a score=-31.0 s hg17.chr17_random 826099 1 + 2618010 G s canFam1.chr9 15590937 1 - 53642819 A a score=100.0 s hg17.chr17_random 826099 1 + 2618010 G s panTro1.chr19_random 2819448 1 + 57627672 G a score=780.0 s hg17.chr17_random 826100 2 + 2618010 AC s panTro1.chr19_random 2819449 2 + 57627672 AC s mm5.chr11 75408785 2 + 121648857 AC s canFam1.chr9 15590938 2 - 53642819 GC a score=4079.0 s hg17.chr17_random 826102 25 + 2618010 ACTCGGGACAAGTGGAGAGCCATCA s panTro1.chr19_random 2819451 25 + 57627672 ACTCGGGACAAGTGGAGAGCCATCA s mm5.chr11 75408787 25 + 121648857 ACGCGGGAGACGCGCAGGGCCACTC a score=2821.0 s hg17.chr17_random 826127 33 + 2618010 GGACAGGGACCCACAGAACGCACACTCACATGT s panTro1.chr19_random 2819476 33 + 57627672 GGACAGGGACCCACAGAACGCACACTCACATGT s mm5.chr11 75408812 30 + 121648857 GGA---GCCTTTGCCTCACTTAGGCTCGCAGAC s canFam1.chr9 15591562 31 - 53642819 GGGCAGGGAGCCGCAGGACGCGCCGCCGCGT-- a score=31073.0 s hg17.chr17_random 826160 158 + 2618010 TCCTGCAGGTGCCAGCACATGCTGGGC------TCCGCTCTCACG-GGACACACGC-AGGTGTGCAAGGACAATGCAAGTGCACACACACATGTGC----AGACACGTAGTGGAAGCATCCACTCGCTCACACCTGTAGGACACACACACACAAACATATGCACACATAC s panTro1.chr19_random 2819509 159 + 57627672 TCCTGCAGGTGCCAGCACATGCTGGGC------TCCGCTCTCACG-GGACACACGCTAGGTGTGCAAGGACAATGCAAGTGCACACACACATGTGC----AGACACGTAGTGGAAGCATCCACTCGCTCACACCTGTAGGacacacacacacacacatatgcacacatac s mm5.chr11 75408842 126 + 121648857 T-----GGGTGCCAGCCCATGAGGGGC-TGCATTCCACTCTCGTGCAGACACACAC-AG-----------------------ACACACAAATGTGTGTAGAGACACTCAGTGGAAAAGATCACCCATTCCGGGCTCCAGGCTACAGACACATGCAC-------------- s rn3.chr10 63154699 148 + 110733352 TTCCGCATGTGCCAGCCCATGAGGGGGCTGCA-TTCACTCTCGCG-GGACAGGCGC-AGGTGTGT-GGGGCATTGCAAACACACACACACACACAC----ACACACACA-------CACACACACACACACAC-------ACACACACACACACACACACACACACACAC s canFam1.chr9 15591593 139 - 53642819 TCCCGCCCGTGCCAGCCCTCGCTGGGT-TCTG-TTCGCTCGCACA-GGACA--CGC-GGGGGTGCCGAGTCACTCCAAGC--AGAGAAGCCTGTGC----AGACACTTG----------------GCTCAC-CTCGCAGG--ACGCACACGCAGACCGATGGACCCTTGC a score=6367.0 s hg17.chr17_random 826318 29 + 2618010 AGAGTTGGTTGAGGATGCTGTAACACAGT s panTro1.chr19_random 2819668 29 + 57627672 aGCGTTGGTTGAGGATGCTGTAACACAGT s mm5.chr11 75408968 21 + 121648857 -----TGGT---GGATGCTAAGGCATGGT s canFam1.chr9 15591732 29 - 53642819 AGAGTTGGTTGGGGTGGCTGTAGTACACC a score=137397.0 s hg17.chr17_random 826347 666 + 2618010 ACACCCCCTAATGCAC-GTGCGCGTCCCC---GCGTGC---ACACACACAC---ACACAGGTGATCCAGGGCACCCAGGGCAGAATCTTCC---CCAAGCACCCCTAACAAGAAGCACAAACATGCACCCATAGAAGTAATCGGGGGACCCTGGGCACAACTCCCTC------TCTCCTTCCCCATCTA---------CCAGGACATGGAGTCACACTCCTAGGCATGTGTGGACAGGCTGCCTACACACTGGCAGGACATGTACATGCTCAACTTTACAAGGACACTGTGGGCACACTCTGCGCACACGTATTCTCAGGTCACATGAACACA-GCA--CTTTGTAACCT-GGAGTCAGTCCCTCACTTGGTCAGTGAGTGGGCTGAAGCACCCACTGGGACAAGGTGGCTGAGAACCAGGA---CAGGGCCTGGTCAGGA---GGGGTTGAGGGCAG-------GGCCTGGGAAGT----------GAGTGATGCAATGAGGTTG-GGCATGATGGCATTGGTACCACCC--CCCACCCAACCACCCACTGCAGGCCTCCCAC-ATAATCGGGTCACTAAACAAAT-CCCAGA-GGGCCCAG-CCCCACCTGTTGCCTGGCTTTCCAGAAACAGAACTCGGTTGGGAAT-GGTTGCTGCTTGGACAGGTCTGTCCCCAGAAAGCCCTG----GGCATGGATGGAGTCCTGTCTACCCTCTGGTTTCCACTGA s panTro1.chr19_random 2819697 669 + 57627672 ACACCCCC-AATGCAC-GTGCGCGTCCCC---GCGTGC---GCACACACAC---ACACACGTGATCCAGGGCACCCAGGGCAGAATCTTCC---CCAAGCACCCCTAACAAGACGCACAAACATGCACCCATTGAAGTAATCAGGGGACCCTGGGCACAACTCCCTC------TCTCTTTCCCCATCTA---------CCAGGACATGGAGTCACACTCCTAGGCATGTGTGGACAGGCTGCCTACACACTGGCAGGACATGTACATGCTCAACTTTACAA-GACACTGTGGGCACACTCTGCGCACACGTATTCTCAGGTCACATAAACACA-GCA--CTTTGTAACCTGGGAGTCAGTCCCTCACTTGGTCAGTGAGTGGGCTGAAGCACCCCCTGGGACAAGGTGGCTGAGAACCAGGA---CAGGGCCTGGTCAGGA---GGGGTTGAGGGCAG-------GGCCTGGGAAGT----------GAGTGATGCAATGAGGTTG-GGCATGATGGCATTGGTACCACCC--CCCACCCAACCACCCACTGCAGGCCTCCCAC-ATAATCGGGTCACTAAACAAATCCCCAGAGGGGCCCAGCCCCCAGCTGTTGCCTGGCTTTCCAGAAACAGAACTCGGTTGGGAATGGGTTGCTGCTTGGACAGGTCTGTCCCCAGAAAGCCCTG----GGCATGGATGGAGTCCTGTCTACCCTCTGGTTTCCACTGA s mm5.chr11 75408989 627 + 121648857 GCACCTCC------------------CCA---GCATGCAAAATACATACAAGAGACACATGTTCGCAAGGATGCCCAGGGCAG--TCTTCCGTGCTGGGCTCAACTCACAGAACCCATAA-----TAGCCATAGAAGCCATTTGGGGA-TGTGGATAGGAACTCCTCAAAAAATCCCCTCCTTTGTAGAGGCAGGTAGGTAGGCCACAGGATTACCCTGCCAGG-------GAACAGGCTGTTTACTTCCTAGCAGGACAAGTGTACCCTGGGCTGTCCCAGGACACTGCTGGGACAGTCTGCT--TACTTCCTCTCAGGTCACATGTAAACA-GGAGCGTCTATGACCT-GGGCCAGACTCCTCACTCAGTCCCTGAGTGGCTTAAAAGACCCAGAAGAACAGGCTGGGTGAGAACTTGGAC--CGGGGCATGGTCAGGA---TGGACAGAGGGAAGCAGGCCAGGCCAGGGATCTCCT------GGGGTGATG-ACTGAGTTCA-GGTGTAAAGGCA-AGGTGCTGCCTGGCCCACAC---------TTGT--GCCTCCCA------------TGCCAGGCAAAT-CCCTGC----CGCAG--------------------TTCAGGGAACAG--CTGTGCTGGGAGCAGGCTGCTGCGTGTGCAGATGCATCTCCAGTAAGCCCTGGGCCGGCGAGGATGGAACCCTGTTTA--CTCTGGTTTTCACTGA s rn3.chr10 63154909 648 + 110733352 ACAGATTCTGTGGCACGGTGAGCCTCCCCAGGATGTGC---ATACACACAAGAAACACAGGTTCTCAAGAATGCCCAGGGCACAGTCTTCCGTGCTGGGC----CCAACAGAACCCATAG--------CCGTAGAAGTCATCTGGGGAATGAGGATATGAACTCCTC-AAAAACCCCCTCCTTTGTAGATGCAGGTGGGCAAGCCACAGGATTACCTCCTCAGGAAGTCAGGTACAGGCTGTTTACATCCTAGCAGGACAAGTGTACCCTGGGCTGTCCCAGGACACTGCTGGGACAGTTTGCT--CACTTTCTGTCAGGTCACATGCAAACA-GGA----------CCT-AGGCCAGGCTCCTCACTCAGTCCCTGAGTGACTTGAAAGACCCAAAAGGACAGACTGGGTGAGGACTTGGAC--CAGGGCATGGTCAGGA---TGGACAGAGGGAAGCAGGCCAGGGAAGAGATCTCCT------GGGGTGATG-GTTGAGTTTG-GGTGTAAAGGCT-AGGTGCTGCCTGGCCCACAC---------TTGTG--CCTCCTGTGGTGGCCAGGCAACTAAGCAAAT-CCCTGC------------------------TGCCTCTCTGGGAACAG--CTGTGCTGGGAACAGGCTGCTGCTTGTGCAGGTGCGGCTCCA-TAAGCCCTGGCCTGGTGTGGATGGAATCCTGTTTA--CTCCGGTTTTCACTGA s canFam1.chr9 15591761 514 - 53642819 --------------------------------------------------------------------ACGCTCCCAGGACAC---------------GCCCGCCTAACGGGACACACG------CGCTCGTGGGCGTGAT-GGGGGACTCGGAGCG----CCGCCC---------------------A---------GCAGGACACACGG--------------------GAGCGTGC----------------GGACAGGTACATCCTCGCTGGTCCAAGGTCAT-----GGGCAGTCTGTTCACACTTCCTCCCAGGTCGCGTACAAGCACACACCCTCCGTAGCCC-CGAGTCAGTCCCTCAGCTGGTTAGGGAGCCGCCACCTCTCCTGGTGGGGACGGGGTAGGTGAGAACCTTGACCGCCAGCTGTGGTCAGGAGAGGGGACGGCGGGGACGGGGCCTGGGCAGAAGGCACCTTCCCAGTGAGCGATG-GATGAGGTGGAAGTGGGGAGGCA-GGGCGCTGCCG--CCCGCAG---------GCTCAGGCTCCCCAC------CTGGTAAGAAAGCCGGG-CCCAGT--------------------------GCTTTCCGGGGGCGG--CTCTGTGGGGAAT-GGCCGCGGCTTATACAGGTGTGTCTCCGGGAAGCCCTG----GGCCGGGACAGGATCCTGTTTACTCCCCAGTTTCTAGTGA a score=1713.0 s hg17.chr17_random 827013 5 + 2618010 CACAT s panTro1.chr19_random 2820366 5 + 57627672 CACAT s mm5.chr11 75409616 5 + 121648857 CGCGT s canFam1.chr9 15592275 5 - 53642819 CATAT a score=91.0 s hg17.chr17_random 827018 1 + 2618010 T s canFam1.chr9 15592280 1 - 53642819 T a score=5971.0 s hg17.chr17_random 827018 65 + 2618010 TTATCTACCAACATTCTGTCCAAGTCTCCTCTTTGGAGCCCTCACCAGAATCACCCTTAAtgaag s panTro1.chr19_random 2820371 65 + 57627672 TTATCTACCAACATTCTGTCCAAGTCTCCTCTTTGGAGCCCTCACCAGCATCACCCTTAAtgaag a score=4280.0 s hg17.chr17_random 827083 30 + 2618010 agtcacagggagaagatgtccacccacgca s panTro1.chr19_random 2820436 30 + 57627672 agtcacagggagaagacgtccacccacgca s canFam1.chr5 46598087 30 - 92064832 agacacagagaggaagatgcaggccaagca a score=54732.0 s hg17.chr17_random 827113 343 + 2618010 tgaggagacaggcctggaacagagccttcctgcacagcc-tcagaagggacccac-cctgctgacaccttgatcttggactcatggcctccagtactgcgagacagtaacattctgttgttgaaggtgcccagtctgtggtactgta---aaacag------ccctaggaaactaacacaGCCTGTTAGCCCACAGATGGTGGAGAGATGGAATGCTCTATGGAGCTCCAGGTTTACTGTCTGCAGCTCCCAAAGTGTGCTACGGGACCCTTGGGTGGGTG-AGGTATGCAAGGTAATTTTGGGTGGTTCAAGGTGAATAATTTAAATTGACATAATAATATATTTATCTTGCTG s panTro1.chr19_random 2820466 343 + 57627672 tgaggagacaggcctggaacagagccttcctgcacagcc-tcagaagggacccac-cctgctgacaccttgatcttggactcatggcctccagtactgcgagacagtaacattctgttgttgaaggtgcccagtctgtggtactgta---aaacag------ccctaggaaactaacacaGCCCGTTAGCCCACAGATGGTGGAGAGATGGAATGCTCTATGGAGCTCCAGGTTTACTGTCTGCAGCTCCCAAAGTGTGCTACGGGACCCTTGGGTGGGTG-AGGTATGCAAGGTAATTTTGGGTGGTTCAAGGTGAATAATTTAAATTGACATAATAATGTATTTATCTTGCTG s mm5.chr11 60887731 271 - 121648857 TAAGGAG--AAGCCAAGGACAGATCTTGCATGTGTGGCC-TCAGGAAGAGCCAAT-TCTGCAGACACCTTGACTGCAGACTTCCAAACT------CTGTG-GACAGCCACTTTGTGTTATTAGATCTGTT--GTCAGAGTTATTCTGTGCAGACAGTCTCCTCCCTATG---------CAGCCTGATAG-CGATGAATGGTGAGAACA-------------GGGGCACC----------------------------TGTTGTGTGGCCTTTGGGGTTCAG-AAGCCTGCCTGGGTAACAAGGGTG-----AAGTGTACCGTCTCACCC--------------TTCAGCTTGCTG s canFam1.chr5 46598117 329 - 92064832 ----tag--tggccctgaacagatggttcccttgcggccttcagaaggaagcagctcctgctggcaccttgattccagatggcacacctggagaagtggggaacagcgactttc-gcctttaga-ctacccagtgtgtgctactttg---ttacag---ctgcctcaggaagcCGGGACAGCCTGTTAGCCCTTGGAGGGTGGACAGA------------TGGAGCATCAGGCACCCTGTCTACACCTCCCAAAGTGTGTTATGTGAACCTCTGGTGCACGTAGCTGTGCAAGGTAATGTTGGGTGGCACAGGATGAATCATTTTAATTTACACAATTGTGTATTTCTCTTACTG a score=600.0 s hg17.chr17_random 827456 2 + 2618010 GG s panTro1.chr19_random 2820809 2 + 57627672 GG s mm5.chr11 60888002 2 - 121648857 GG a score=23094.0 s hg17.chr17_random 827458 270 + 2618010 TAAATCGGATCCCCAcctgt-taggaaccag-gcaacacagcaggaggtgagcagccagccagtgagcaaagcttcatctgtagaaacagccacttcccatccctcacattactgcatgagccctgccacctgtcagatgagtggtgccattagattctcataggagcatgaaccctactgtgaactgcgcatgccagggatctagattgcgtgctccttatgagaacctaatgcctgatgatctctgactgtctcccatcacccccaagtg s panTro1.chr19_random 2820811 268 + 57627672 TAAATCGGATCCCCATctgtataggaaccagcgcaacacagcaggaggtgag----cagccagtgagcaaagcttcatctgtagaaacagccacttcccatccctcacattaccgcatgagctctgccacctgtcagatgagtggtgccattagattgtcataggagcatgaaccctactgtaaactgcgcatgccagggatctagattgcgtgctccttatgagaacctaatgcctgatgatctgtgactgtctcccatcacccccaagtg a score=18166.0 s hg17.chr17_random 827728 234 + 2618010 ggaccacgtaattacaggaaaacaagctcagggctcccactgattctatgttatggtgagttgtgtaattatttcattatatattacagtgaaataatcatagaaataaagcacacaataaatgtaatgggctcgaatcatctctgcaccatcccttccccttctcccaggtccgtggaagagttgtcttcaagaaaactgctctctggtgccaaaaagtttggggaccgctgG s panTro1.chr19_random 41322976 231 + 57627672 gaaccatgtagttgcaggaaaactagctcagggctcccactgattccacattatggtgagttgtgtaattatttcattatatattacagtgaaata---atagaaatgaagcacacaataaatgtaatgggcttgaatcatctccacatcatcccttccccttctcccgggtccgtggaagaattgtcttcaagaaaactggtctcaggtagcaaaaaggttgggaaccgctAG a score=846.0 s hg17.chr17_random 827962 3 + 2618010 TGT s panTro1.chr19_random 41323207 3 + 57627672 TGT s canFam1.chr5 46598446 3 - 92064832 TGT a score=12321.0 s hg17.chr17_random 827965 79 + 2618010 AAATGTTTCTAAGAATAGTT--AAGCAACTTAAGCTTCACATGCTACGAAGAATACAGCTTTAAATGCTAATAAAAATAGG s panTro1.chr19_random 41323210 79 + 57627672 AAATGCTTCAAGAAATAGTT--AAGCAGCTTAAGGTTTACATGCTACAAAAAGTACAGGTTCAAACGCTAATAAAAATGGG s mm5.chr11 60888004 71 - 121648857 AAATGCTTCTGAGAGTATTTTCATGCACCTGGAAGTTT----------TAAGAGATAAGCACAGGTGCCCATAAAAAGTGA s canFam1.chr5 46598449 71 - 92064832 AAATGCTTCTAAGAATCATT--ATGCATTTTCAGTGCCAC--------TGAAATATAGATTTCAATGCTACTACAAATAGA a score=5337.0 s hg17.chr17_random 828044 36 + 2618010 TGCAAATGAAAACACTCTTT--CTGTGGTCCAGGGAAT s panTro1.chr19_random 41323289 38 + 57627672 TGCAAATGAAAACACTCTCTTGCTGTGGTCCAAGGAGT s mm5.chr11 60888075 36 - 121648857 TGCAATTGAACAGACTCTTG--CTGAGGTCAAGGTAAC a score=8733.0 s hg17.chr17_random 828080 121 + 2618010 CTTAACCATTCTATCAGAAAGACTTGCAGCTTGGAGCTGCAGCTGCCCTCCCACATCCTGTCCACTGTaaagccctgcaacacacacataca------------------cgcacacacacacacacacacgcgcacac s panTro1.chr19_random 41323327 138 + 57627672 TTTAAGCATTCTATCAGAAAGACTTGCAGCTTGGAGCTGCAGCTGCCCTCCCACATCCTGTCCACTGT-AACCCCTGCAacacacaaacacacatatgcacacacgtgtgcgcacacacacaaacacacacacacacac a score=2134.0 s hg17.chr17_random 828208 24 + 2618010 tacatacacatgcatatacttgca s panTro1.chr19 32891774 24 - 82489036 tacatacacatgcatatacctgca a score=4065.0 s hg17.chr17_random 828232 48 + 2618010 ----cacacacgcacacacatgcacacagatgcacatacataaatacattca s panTro1.chr19 32891798 40 - 82489036 ----cacacacatacacaca--cacacacatgcacctacata------ttca s mm5.chr11 60888185 49 - 121648857 CAGCCAGACACATATGTACA--CACACATCTGCATGCACAGA-ATTCACACA a score=9522.0 s hg17.chr17_random 828280 76 + 2618010 catgtatatacctgcacacacacacat-----------gcacaca----------cacatgcatat---------------tcctgcaaacacacacacaca------------cacacacacG s panTro1.chr19 32891838 84 - 82489036 catgtacatacctgcacacacacacac-----------acgcacatatatacatacacatgcatat---------------acctgca--cacacacataca------------cacacacacG s mm5.chr11 60888234 121 - 121648857 CATATTTATAGGCGCACATATACACACAACTCATACAGACACACA-ACTCACGTATACATGCACATATGACATAACCCCGAATCTGCA--CATACACATACAAGTTACTTAAATCACAAATACA s canFam1.chr5 46598764 74 - 92064832 CCTGCACCTTCCTGTCCACCCCTAGCCCACT-------acacaca----------cacacacacac---------------agatgca--cacacacacaca------------cacacG---- a score=3539.0 s hg17.chr17_random 828356 34 + 2618010 -----CTGTGCTTCATGCCCTCACTAGGGTGGCCTGGGA s panTro1.chr19_random 41323466 34 + 57627672 -----CTGTGCTTCATGCCCTCACTTGGGTGGCCTGGGA s mm5.chr11 60888361 32 - 121648857 -----CTGCACTCAGCTATCTGCCTAAGGC--CATAGGA s canFam1.chr5 46598838 37 - 92064832 TTGCACCATGCTTCA--CCATGCCTAAGGAGGCACAGTG a score=3256.0 s hg17.chr17_random 828390 45 + 2618010 GGAAATGCGTGTTTTTAGGAGAAATGAAGACAACTC-AGGCCCC--TC s panTro1.chr19_random 41323827 45 + 57627672 GGGAATGCATGCTTTTAGGAGAAACGAAGACAACTC-AGGCCCC--TC s mm5.chr11 60888393 48 - 121648857 AAGACCACTTGTTTGTAAGAATTGTAAGGGTAATGCTAGGTGCCGGTC s canFam1.chr5 46598875 44 - 92064832 GGGACTTTGT-TTCAGAAAAGAAATGCAGGTGTGCC-CAGCCCT--CC a score=0.0 s hg17.chr17_random 828435 14 + 2618010 ATTCTCCTGGTGTT a score=1992.0 s hg17.chr17_random 828435 7 + 2618010 ATTCTCC s panTro1.chr19_random 41323872 7 + 57627672 ATTCTCC s mm5.chr11 60888441 7 - 121648857 ATTCTCC a score=664.0 s hg17.chr17_random 828442 7 + 2618010 TGGTGTT s panTro1.chr19_random 41323879 7 + 57627672 TGGTGTT a score=42829.0 s hg17.chr17_random 828449 510 + 2618010 TGCACAAGTGCCTTCTCTGCAGACCATGCTTCAGCCTCTTTCTTGGTTCTCCCTCTT-ACTGAAAGAGAGAAGCAGAGGCCCGGCACATACTCGGCTGCTTAGGGCTCAAGCCAAGTTCGCAAGCTTCCTGGG----GAGCCTAGTGAGATGAAGGCACT-GCAGAGCCTCCCCAAAAGAGTCGTCGGC-TTTTCGTGGATCCTTGAGCCCAGGAAGGC------GATAGGTGAGACATCACAGTTCATC----AGAAGACACGAGCAAACTCCGGCGAGAAAGGGCAACGGTCA-------AAGATTTTATTCTCT-CGGAAAAGGGTTCTC-GGGCTGTAAGCAGCAGGCA--GAAGACTTTATTGCACGCGTAGTTAGGTGATGGCGACCTACGGTTTTCACTGGGGACTGGGATCGAGA--GTGACCCGACCTCCTACTCATGCTCGtctctccctgtctctctctttgccttttgtgtctctctgcctgtctctctcgctccttttcctctcagcctcctctgtctctctcctta s panTro1.chr19_random 41323886 500 + 57627672 TGCACAAGTGCCTTCTCCACAGACCATGCTTCAGTCTCTTTCTTAGATCTCCTTCTT-ACTGAAAGAGAGAAGCAGAGTCCCATCATGTACCCAGCTGCTTGGGGCCCAAGCCAAGTGTGCAAGCTTCCTGGG----GAGCCTAGTGAGTGGAAGGCACT-GCAGACCCTCCCCAAAGAAG-CATCAGT-TTTTGATGGATCCTTGAGCCCAGGAAGGC------AATAGACAAGACATCATGGTTCACC----AGAAGAGACAACAAAAATGCGGTGAGGAAGGGCAGTAGTCA-------AAGGTTTTATGCTCCACGAGAAGGGGTTCTCAGGGCTCTAAGCAGCAGGC-----TGACTTTATTACATGTGTAGTTAGGTGATGGCGACCTACAGTTTTCACTGGGAACTGGGATCAAGA--GTAACTCGACCTCCTACTCCTGCACGtctctctctgtctc------tgtgttttgtatctctctccccatctcacc--ctccttatcctctcagcctcctctgtctctctccaaa s canFam1.chr5 46598919 490 - 92064832 TGTAGAGGCAC-------ACTGGCTTCGCTCCATCCT-----TTGGCTTTCCCTCTTAAAAGAAAGCGCACAGCAGAGTCCCGT-GTGTGCTC-GCTGCCTCCCACCGGCACC-GGTCACCGAGCTCGGCGGGTCCTGAGCCTGGTGGGGACCGTCAACTCGCAGGTCTTCGGAAACCAGG-CGGCTGCGCTGCGGTGGAGCCTTGAGCCCAGGGAGGCGAGCGGGAGAGGTGGGACCTCCAGAGTCACCGCAGGGGAGACACGACCGAAA-GCAGGGATAGGGAGGAGTGGGCAGCCCGAGAAGGTTTTATT-TCT-AAGGAAGGGCTCCTGGGGGCTGAGTCCGGCAGGCAAGGATGACTTCACTGCAGGTATG--CAGG-GGTGGTGACCTGCAGTGGACACG------TGGGATAAAGACGGTGAC-CGACCTGTTCCC------CGCCTCCCTCCGCATCTCTCT------------TCCCTCCCCCTGTCTCAAccctccccttccctctccaccctccc---ctccctcccca a score=2219.0 s hg17.chr17_random 828959 91 + 2618010 tcgctcatcctctctctatctcac--tcccttctccccatctctctttctctctccttctTTTCCACTTCTCTCACCCTCCTCATCTCTCTGC s panTro1.chr19_random 41324386 87 + 57627672 tctctcttcctc------tctcactttcccttctcctcatctctctttctctctccttcttttccagttctctctccctcctcatctcgctGC s mm5.chr11 60888585 87 - 121648857 TCCTTTATCGTGTCTTCATCTGTCTCTTCTCCATCCCTTTCCCCCTCTGTCACTCCATCCTCTAAA------TTGTCTTTTTTATTTTTCGGG s canFam1.chr5 46599409 51 - 92064832 ----------------------------cctcttccccctccgcc-----ccAGCCGTCCCCCAGG-----CTCACCCTGCCCGCGTCG---- a score=28642.0 s hg17.chr17_random 829050 257 + 2618010 CTGCCACTGTTCAGGCTCCTGGG---------GCCCCACGTGGATGGGCGGACACAGGACTCCTAGGCTACCTTTCATAGCGCAAGCAGAGGGCTGCAGGACCTTGGT---------------CCCCACCTCCCAGCATCCTCAAAATGAGGGGTGTGGGGTGTG-CCGTGCTCTCCTGAGTGGGCGCCCCACACTCCAGGAAGCA----GAAACTGCAGGTCACAGCTGGCTCGAGTG-----GTGCCCACGGGGCTGCCAG--CTTCCATCGTGTGATCTGCTGAGGCCAA s panTro1.chr19_random 41324473 261 + 57627672 ATGCCACTGTTCACGCTCCTGGG---------GCTCCACGTGGACAGGTGGACATGGGACTCCTAGGCTAATTTTCACGGCACAAGCACAGGGCTGCAGGACCTTGGT--------------CCCCCACCTCCCAGCACCCTCAAAATGAGAGGTGTGGGGTGTGCCCGTGCTCTCCTGGGTGGGCGTCCCACGCTCCAGGAAGCA----GAAACTGCAGGACAAAGCTGGCGCAAGTG---ACATGCCCACGTGGCTGCCGG--CTTCCATCTTGGGATCTGCTGAGGCCAA s mm5.chr11 60888672 243 - 121648857 CTG-------TCAAGTTGCCGGA----CGAGCGTCCCCAGTGGATGCGCG----CAGGACACCCAGGCCGCCTACTGTTGCACGCATACAGGGCTGCGGGGCGGCAGT---------------GCCCGCGAAGCCGTGTATCCCGAGCGA----------ACGCG-GCGCGCTCTCCTGAGTGGGAGAACTGCGCTCCGGGAAGCA----GAAGCTACACGTTTCCACAGGCTGGGGTG---ACGCGGTCACCTCGTCGCAAG--CCTCTGTCACGGGGCCTGCAGTGACAAA s canFam1.chr5 46599460 264 - 92064832 ----------TCAGGCAGCGGGG--------CCTCCCTCCTGGGCGGGGGCGCACAGGACCTCGAggccgcggtccggggcgcgcgcgcagggccgagcgggggcgctgag--gccgaggagcccgcgccggcccgagggcgccgtgtcgggggtcccgggcgcgcccgcgcTCTCCTGGGTGGGCTGCCTGCGCTCCGGGAAGCA----GAAGCTGCACGTCTCCACCGGCTCTGGCGGCGACGCGCCCGTGGCGCTCCCCG--CTTCCATCCAGTGATCTGCGGGAAG--- s danRer1.chrNA 35830912 286 + 390413307 CTGACACTA-GCAAGCTACCCAGGGGTCCACCTCTCTCACTGGACTTGCAG---TAGAGGCCCCAGGGTGCCCCCTGGCCCTCCACCTAGGGGCCTC-TGACCCCAGCAAGCTACCCAGGGGTCCACCTCTCTCACTGGACTTGCAGTAGAAGCCCCAGGGTGCC-CCCTGGCCCCCCGCCTAGGGGCCTCTGACCCCAGCAAGCAACCCAGGGGTTCACCTCTCTCCCTGGACTTGCAGTAGAATCCCCAGGGTGCCCCCTGATTCTCCACCTAGGGGCCT-CTGACCCCAG a score=-2558.0 s hg17.chr17_random 829307 106 + 2618010 -------AGCAGAGGACA---GCAGCCCAGGCCCATCTCTGCAGCAgggtgggggtaggggtgggcttgggggtggggatggggatgggAGCCGCCAATGCAAACTGGCCCCTGGC s panTro1.chr19_random 41324734 106 + 57627672 -------AGCAGAGGACACCTGC--CCCAGACCGA-CCCTGCACCAgggtaggggtaggggtgggtttgggggtgggaagggcgatgggagCAGCCACTGCAAAGCAGTCCCTGGC s canFam1.chr5 46599724 35 - 92064832 -------GGCGGAGGGCG---ATGGCCTTGGCCTT-----------------------------------------------------------------------GGCCCCCGCC s danRer1.chrNA 35831198 65 + 390413307 CAAGCTATCCAGGGGTCC---AC-GTCTCTCCCTAGACTTGCAGTAGAG-----------------------------------------------GCCCCAGGGTGCCCCCTGGC a score=3562.0 s hg17.chr17_random 829413 118 + 2618010 TGGTTTCCTACCCTGCACCCTGCCATGCAAGTcctcctctcctacccctacccctacccctgtctgccccacctccaccc--ctaGGCTGCCCCACACCCAGGCTCCAGAAGTCTCCCAG s panTro1.chr19_random 41324840 112 + 57627672 TGGCTTCCTGCCCCACACCCTGCCATGCGAGGCCTCTCCTCCCGCCCCCAGCCCTGCCCCT-----CACCACCTCCACCC--CTAGGCTG-TCCAGATCCAGGCTCCAGAAGTCTCCTAG s canFam1.chr5 46599759 71 - 92064832 CG------TCCTCAGCGCCCTG-----------------------------CCCTGCCCCA-----GGGGACCCGCGGCCGGCTGGGCTGTCGGCCAGTTGGGCTCC-----CCGC---- a score=2904.0 s hg17.chr17_random 829531 107 + 2618010 GATCCAGGAACTAAGGGCAGCCATTGGGTTCCATAGCCCCTAGTCCATGAGTCAGCCACCCCTCTGCGTGCTGACAAACCTTGGCT----CTCATGCCCCACCCCAAGCCA s panTro1.chr19_random 41324952 111 + 57627672 GATCCAAGAACTAAGGGCAACCACTGGGCTCCGCAGCCCCTAGTCCATGAGTCAGCCACCCCTCTGCATGCTGACAAACCTTGGCTGTCACTTATCCTCCACCCCAAACCA s mm5.chr11 60888945 77 - 121648857 GGTCCAGGAGCCCAGCGC----------TTCTACAGCCAC---CCCAGGACT----TGCCCTTCTGAGCGCCCCTGAACA--GGTT----TTCACGGCCG----------- s canFam1.chr5 46599830 81 - 92064832 GGTCAGCGGACTGCCGGC----------TCGCCCACTCCCCAGC------GCCAGCTGCCTTTCTGC-TGGGAAGGAACA--GGTTTCGCCCCTTGGCCG----------- a score=-2031.0 s hg17.chr17_random 829638 28 + 2618010 AGCACACAGCCCTGTCCCCCCACCAGCA s mm5.chr11 60889022 7 - 121648857 GGCTCAC--------------------- s canFam1.chr5 46599911 22 - 92064832 ACCACCC---CTAGGCCCCCCAGGG--- a score=916.0 s hg17.chr17_random 829652 14 + 2618010 -TCCCCCCACCAGCA s panTro1.chr19_random 41325329 14 + 57627672 -TCCCCCCACCAGCA s canFam1.chr5 46599921 12 - 92064832 GGCCCCCCAGGG--- a score=2356.0 s hg17.chr17_random 829666 31 + 2618010 TTATCACCGCCTCCTGATTTTGGCCCTGACA s panTro1.chr19_random 41325343 31 + 57627672 TTACCACCTCCTCCTAAACATAGTCCTGAGA s mm5.chr11 60889029 26 - 121648857 TTCTCCCCGCACCCCGAAACCATCC-----A s canFam1.chr5 46599933 31 - 92064832 GGACCACCTCCTCCAGGTTTCAGCCCGGAAG a score=0.0 s hg17.chr17_random 829697 32 + 2618010 GCCCTGCTTCCTGGTAACCTTGCCCCCTCCCA a score=600.0 s hg17.chr17_random 829697 2 + 2618010 GC s panTro1.chr19_random 41325374 2 + 57627672 GC s mm5.chr11 60889055 2 - 121648857 GC a score=5108.0 s hg17.chr17_random 829699 30 + 2618010 CCTGCTTCCTGGTAACCTTGCCCCCTCCCA s panTro1.chr19_random 41325376 30 + 57627672 TCTATTTCCTGGTAAACTTCCCCCTTCCCA s mm5.chr11 60889057 27 - 121648857 CCTCGCCCCGGGGTAAC---CCGCTTCCCG s rn3.chr10 65131374 30 + 110733352 CCTACTTCCTGGACATCACTACCCCTCCCA a score=1589.0 s hg17.chr17_random 829729 11 + 2618010 CCCTGCTCCAG s panTro1.chr19_random 41325406 11 + 57627672 CCCTGGTCCAG s mm5.chr11 60889084 11 - 121648857 ATCTCCTCTCA s rn3.chr10 65131404 11 + 110733352 CCCAGCTGCAG s canFam1.chr5 46599964 11 - 92064832 CCCTGTGCGGG a score=57282.0 s hg17.chr17_random 829740 446 + 2618010 -GCAAGCCCAAAGGCCAG-GCCCTCCACCCACCCTTCCTGGGGGCCACTCTACTATCTCCTTGCCCAGATGTCTTAACCTGGCTTTACCAAGATAGAATAAATA--ACAGGGATGAGGCCCCGGACCCCGCCAGGAAGA-----TGTGC-CAAAATACCCTCCATTTAGAAGTGGGAACAGTGATGG--GGCCTATGGATGACCCCAG-----GATTGTCACCCAAGCAGCAAGAAGGGCAAGGAGCCCGGTTTCCTGCCCTTAC------CCGGGGAGGACGTGGCCAGGGCTCCAAAAGGCCCTGGAGAGGGGTGGGCAGGAG---AGCAGATCCACCCTCCTCTTGAGGAAGCA-GCCACCATCCCCAGGAAG-AGCAGATGGGGGCACACAGGCAGAGTCCCCACGTGCTGTAGAGCAGGGCCAGCAGAACTGTACTCAGCCCCAGCCCC-AGGGGAGCTGCAAGAT-------AGAC------- s panTro1.chr19_random 41325417 444 + 57627672 -AGAAGCCCAAAGGCCAGTGCCCTCCACCCATGCTTCCTGGGGTACACTCTACTTTCTTCTTGCCCAGATGTCTTAACCTGGCTCTAACAAGCTAGAACAGATA--GCAGGGATGAGCCCCCAGCCTCTACCAGGAAGACCTTTTG-------AATGTTCTCAGTTTAGAAGCAGGGGCAGTGACGG--GTCCTAGGGATGACCCCAG-----GGTTGTCACTCAAGCAGCAAGAAGGGCAAGGAGCCCTGTTTCCTGCCCTTAC------CCTGGGAGAACTTGGCCAGGGCTCCACAACGCCCTGCAG------GGGCAGGAGGAGAACAAATACACCCTTCTCTGGAGGAAGTC-ACCACCATCCCCAGGAAGCAGGAGATGGGAGCACACTGGCAGAGTCCTCGCGTGCTATAGGGCAAGGCCGACAGGTCTGTACTCGGCCTCAGCCCC-AGGGGAGCTGCAACAT-------AGAC------- s mm5.chr11 60889095 404 - 121648857 ---AAGCTGAA--GCAAGAACCTGACACCCACCCTT-------------------TCTTCTGGCCCCACTGTTTGAACCTGATTTCATTAAGGTGCTAT----------GGGATGTG-CCCCAGGCCACGCCGG----------TGGGCTCAGAGTGTGTCCACCCTGGATGCAGGGGTAGTGGTGGATAGCGGAGGGGAGAGTACTGCTGGTGATTGTC---------------AGGGAAGGAAGCCTGGCTTTCCATACTTACGGTGGGCGTGGGGAGAGTTTGCTTGTGACCCACGTGGCCCGGCAG----GCTGGCTGGGT---AGTGGCTCTCCTCTACGCCTGAGGAAGGAGGCCAAGGCCACCAAGAAACAGCAGAAGATGGCGCAGAGGCAGACCCCCAGTGTGCAGTAGAG---AGTCAGCTGGTCGCTACTTAGCCTCAATCCT-GTGGGTGTTTCAGGAT-------AAGC------- s canFam1.chr5 46599975 436 - 92064832 GCCAAGCCGGC-GGCCGGCAGCCCACATCCACGCT--------------------TCCTCAGGTCTTGATGT---GAACTGATCTCACC-AGACAGAAAAAGTACTGCAGGGATGTGCCCCAGGCCTTTGTCAGGAAGGGC---TGG---CAAACTGCTGTCCTTTTGGAAGCAGGGCCAGTGCCAG--GACAGAAGGCCGACCAGCA-----GATTGTCCCACAGGCCCCGGGA--GTCTGAGGGCCCGAT---CTGTGCTCAC------CCTTGGAGGACTTGGCCTGGGTCCGGCATGGTGCTGGTG-AGGGCTGGCAAGAG---AATTGGTCCCCTCTCCTCTTGAGGAAGCAGGCCACCGCCAGGATGAAGCAGCAGATGATGGCACAGAGGCAGAGCCCCAGAGTGCTGTAGACCAGGGCCAACTGTTCGGTGCTCAGCTTCAGCCCTGAGGGGTGCCACAAAGCTCCCGTGAGGCACGAGAT a score=-178.0 s hg17.chr17_random 830186 14 + 2618010 TGAGA--------CCCTCACAg---- s panTro1.chr19_random 41325861 14 + 57627672 TGAGA--------CCCTCACAT---- s canFam1.chr5 46600411 26 - 92064832 TGGGAGGGGCTCTCCACCACCCAGGG a score=15892.0 s hg17.chr17_random 830200 196 + 2618010 gttgggctctgtgtccccaccgaaatctcatctggaattgtaatcctcctgtgtcaagggaggaacctggtgggaggggatgggatctggggacagtttcccccctgctgctcccctgatagtgagggagttctcaggagagctgatggtttgaaagtgtggcacttcctgcttctccgctcactccctcctgccg s panTro1.chr19_random 41325875 196 + 57627672 gtttggctctgtgtccccacccaaaactcatctgggattgtaatcctcctgtgtcaagggaggaatctggtgggaggagattggatttggggacagtttcccccgtgctgctccccggatagtgaggtagttctcaggagagctgatagtttcaaagtgtggcacttactggttctccactcactccctcctgccg a score=10028.0 s hg17.chr17_random 830396 143 + 2618010 ccttgtggagaaggtgcctgcttccccttcgccttctgccatgactgtaagttccctgaactgggagtcgattaaacctctttcctttataaattacctaggctcaagtatttctttatagcagtgtgaaaacaaactaatac s panTro1.chr19_random 41312381 143 + 57627672 tcttgtgaagaaggtgcctgcttccccttccccttctgccatgattataagtttccagaactgcaagtcaattaagattgtttcctttataaattacccaatctcaggtatttctttacatcagtgtgaaaacaaatgaatac a score=10257.0 s hg17.chr17_random 830539 92 + 2618010 CCCTTCCCTGA--GGCGCCTTCT--CCTTAGGCAACCCGCTGCCCCCATGCTCCTCCTCT-------------GCCCCCTGTC------CTTTCTTTTCCCCTCATGAGGCCCAA s panTro1.chr19_random 41326218 92 + 57627672 CCCTTCCCTGA--GGTGCCTTCC--CCTTAGGCAACCAGCTGCCCCCATGCTCCTCTTCT-------------GCCCCCTGGT------ATTTCCTTTCCCCTCATGGGGCCCAA s mm5.chr11 60889530 111 - 121648857 CCCCTTCTGGAACGGTGCCTTAT----TTAGGCCTGTAGCTACATGTACCCTCCTCCATTCCAGGACTAAGTGGCCTCCTTACCATAGGCTTTCTTTTCACCTCATTAGGCCCAA s canFam1.chr5 46600437 73 - 92064832 CCCTTCTCTGA--AGTG---TCC--CTGCAGGCTAGCAGC---------------CCCTT-------------GTCCTGCAAT------CTTTCTTTTC-CCTCATTGAGCCCAA s danRer1.chrNA 35832000 81 + 390413307 CCCTCCACCTA--GGGGGCCTCTGACCCCAG----CAAGCTACCCAGGGGTTCCACCTCT--------------CTCCCTGGA------CTTGCAGT--------AGAGGCCCCA a score=-3589.0 s hg17.chr17_random 830631 34 + 2618010 GTGATAAACGGGGccagccccagtcccagcccca------- s panTro1.chr19_random 41326310 5 + 57627672 GTGAT------------------------------------ s mm5.chr11 60889641 33 - 121648857 GTAATCCACACAGCCATCCCCAGGTCCGCCTCA-------- s canFam1.chr5 46600510 40 - 92064832 GCAAGCCACATGGCCGTCCCATCCACCTGCCCC-CTTGGAG a score=-880.0 s hg17.chr17_random 830665 3 + 2618010 -gcc s panTro1.chr19_random 41326315 2 + 57627672 --CC s canFam1.chr5 46600550 3 - 92064832 GGC- a score=679.0 s hg17.chr17_random 830665 18 + 2618010 gccccagccc-cagcccca s canFam1.chr5 46600550 19 - 92064832 GGCAGAGCCCTCAGCCCCA a score=2681.0 s hg17.chr17_random 830668 15 + 2618010 ccagccc-cagcccca s panTro1.chr19_random 10816532 15 - 57627672 CCAGCCC-CAGCCCCA s canFam1.chr5 46600553 16 - 92064832 AGAGCCCTCAGCCCCA a score=1571.0 s hg17.chr17_random 830683 24 + 2618010 TCCTACTGCAGGCCTGTGTGGCTG- s panTro1.chr19_random 10816547 24 - 57627672 TCCTACTGCAGGTCTGTGTGGCTG- s canFam1.chr5 46600569 24 - 92064832 GCATGCTGTCCACCTGTCTGGCTC- s danRer1.chrNA 35832097 25 + 390413307 TCCACCTAGGGGCCTCTGACCCCAG a score=-627.0 s hg17.chr17_random 830683 24 + 2618010 TCCTACTGCAGGCCTGTGTGGCTG--- s canFam1.chr5 46600569 24 - 92064832 GCATGCTGTCCACCTGTCTGGCTC--- s danRer1.chrNA 35832097 25 + 390413307 TCCACCTAGGGGCC--TCTGACCCCAG a score=7172.0 s hg17.chr17_random 830707 75 + 2618010 CTGGAGAGGCCGTGTTCCTTTCCTCTCCCCGAGCCTG----------CCTGATATG-----CTTTCTGGAT-----CCTGGAGGAAACTGACCCC s panTro1.chr19_random 10816571 75 - 57627672 CTGGAGAGGGTGGGCTCCTTTCCTCACCCCGAGGCTG----------CCTGATATG-----CTTTCTGGAT-----CCTGGAGAAAACTGACCCA s mm5.chr11 60889674 63 - 121648857 CTGATGACGTGGGATTCCTTTTCTAGCCCCAAGAC------------ACTGCTATG-----CTTTCTG--------------AGGTATTGGCCC- s canFam1.chr5 46600593 78 - 92064832 CTGGAGAAGTTG-ATTCCCGGCCTCA-CTCAGGCTTG----------CCTGGTGTGGACCCTTCTCTAGAC-----TCTGGAGACAATCAGCCCC s danRer1.chrNA 35832122 90 + 390413307 CAAGCTACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTAAAGGCCCCAGGGTG-----CCCCCTGGCCCTCCACCTAGGGGCCTCTGACCCC a score=16193.0 s hg17.chr17_random 830782 167 + 2618010 CTAT-TCTCATACTGGTG-CAACATCTTCCAAGACCTCAAAGCTGTACCATTT--GAGC-CAGTCTTTTTTCTTATCTCCACTTGC---TAGGGCTGTCATTGGGACAGTCCTAGA---------GGGTGGTGCCAATGGATGAATGGATGGA----TGGACAGT--AGTCCAGGGATGATGTCCCTGTC s panTro1.chr19_random 10816646 178 - 57627672 CTAT-TCTCATACTGGTG-CAACTTCTTCCAAGACCTCAAAACTGGACAACGT--GAAC-TTGTCTTGTTTCTTGTCTCTTCTTGC---TAGGGCTGTCATTGGGACAGTCTGAGATGGGGAGTCGGG-GGAGACAATGGATGAATGGATGGAAGAATGGACAGC--AGTCCAGGGA-GATGTCCCTGTG s mm5.chr11 60889737 157 - 121648857 --------CAGACTGATGACACCTTTCCCCAAGACCTTAAAGCTGGACACCTC--TGGCGCTGGCCCATTCTGTTTCTCCACATGC---TTTGGAGGC-----AGACAAACCCAG----------GGATGG-----ATGGATGCATGCATGCATGTATGCATGCTTGTGTCCCGGGAGGGTGACTCCACC s canFam1.chr5 46600671 160 - 92064832 CTCTACCCCAGGCTGGTAGCAACTTCTTCTAAGAGCTCAGAGCTGGACACCTCTGGAGC-TGGCTCTGTGTGCCATCTGCTCTTTCCCATAGGACCTAGATCGGGCCAGTACCAG----------AGGTGG-----ATGGATAAGTGAA--------GAGACAAT--AGTCCTGGGCAGATGACTC---- a score=8701.0 s hg17.chr17_random 830949 49 + 2618010 TGTCCTGAACCGGGCCCTTCCTCCAATGAGAAGCCTTCCTGAGTGAGTA s panTro1.chr19_random 10816824 49 - 57627672 TGTCCTGAACTGGGCCCTTCCTCCAGTGAGAAGCCTTCCTGAGTGAGTT s canFam1.chr5 46600831 48 - 92064832 TGCCCTGACCTGGG-CCTTCCTCCAAGAGGTGGCCTTCCTGGGGAAGCA a score=25951.0 s hg17.chr17_random 830998 343 + 2618010 TATAcagtcatcccttggtatccatggaggattagttctagggtccccgggaatgccaaaatccatggatgttcaagtctctgatagaacatggcctagtatttacgtataagctatgcgcatcctcccgtatacgttagaccgttactagattatg----atgtgtaatacaatgcagatgctacataaatggtcgtgatactgtattctttagggaatgatgacaagaacaaagtctgcacatgttcaatagaaacataaccatccaatttattttctgaatattttccatctgctgttg-ccgaatctatagatgcagagctcctggatacgagagccaagtgTG s panTro1.chr19_random 10816873 345 - 57627672 TATATagtcatcccttggtatccatggaggattagttctagggtccccggggatgccaaaatccatgcatgctcaagtcgctgacataacatgacctagtatttacatataagctatgcacattctcctgtatacattagaccatctctagattattcattatgtgtaatacaatgcagatgctatataaatggttgtgatactgtatt---tagggaatgatgacaagaacaaagtctgcacatgttcagtagagagacaaccatccgatttgttttctgaatattttccgtctgctgttggctgaatccacagttgcagagctcccagatacgagggccaagtgTG a score=34749.0 s hg17.chr17_random 831341 240 + 2618010 CTTTGAGAGTAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGCAGGTGTTGATCAGGAGGGCCC---TGCACTGGGGCATCTGGACGTCCTGCCTC---AGGACTTGAGACTCCAG-TTGGATGGCACAGACAGACTCAGCCCAGGTCAAAGCCGTCCCCTTGAAGTTTCATTTTATCCCAAGCTCTTTCTGGACCCTGGAATT-TGGCATCCCCTAGGCCCTGCGTGGAAGGACAGATGAACCAG s panTro1.chr19_random 10817218 236 - 57627672 CTTTGAGAGTAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGCAGGTGTTGATCGGG-GGACCC---TGCACTGGGGCATCTGGACGCCCTGTCTC---AGGACTTGAGACTCCGT-TTGGATGGCACAGGCAGACTAAGCCCAGGTCAAAGCCCTCCCCTTGGATGTTCATTTTATCCCAAGCTCTTTCTGGACCCTGGAATT-TGGCATCCCCTAGGCCCTGGGTGG---GACAGCTGAGCCAG s canFam1.chr5 46600881 220 - 92064832 CTTCGAGAGTGGGACAGGTCCAGTTGCTAATGAATCTGGGATAGCA------AACCAGGAGGGCCCAGGAGAACTGGGGTG-CTGGTCACCCCACTTCTCAGGGTCTTGAGCCTCTGGTTTGGATGCCAGAGGAAGACTCAGCTC----CAAAGCCCTCCCCTTGAAATTT-----------------TTCCTGGCCCCTGGAATCAGGGCACCCCCTAGGCCCCAGGTGGAAGGACAGATGGGCCAG a score=28296.0 s hg17.chr17_random 831581 348 + 2618010 GTTTTAGATAACATGTCTAGAAGAGTGAGCCCCTACTGTGTGCTCGGCACTTTCCCCACAGGATCCTCTAGCTAGAATATCCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCAGAAATGAAAAAGCGATACCATTAGATACACTAAAAAGAC---------------------CATTAGGTAATAGTATTAGCTTTTGTATTCTGAGATCCAACAGCAGCAGTCACTTCCCTCCACCCCTATGTGTATCCCAGGACCACCCTGGGCGGGGAGGGCTGAGGTTAGGGAGCAGCCATGGATGCTCTGATGCTGGCCCTGGGCCTCGGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGG s panTro1.chr19_random 10817454 357 - 57627672 GTTTTAGATAACATGTCTAGAAGAGCGAGCCCCTACTGTGTGCCTGGCACTTTCCCCACAGGATCCTCTAGCTAGAATATTCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCAGAAATGAAAAAGTGATACCATTAGAGACACTAAAAAGACGATTAGAGATACTAAAAATACCATTAAGTAATAGTATTAGCTTTTGTATTCTGAGATTCAACAGCAGCAGTCACTTCCCTCCACTCCTATGTGTATCCCAGGACCACCCTGGGCGGGGAGGGCTGAGGTCAGGGAGG------------TCTGATGCTGGTCCTGGGCTCCGGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGG a score=3698.0 s hg17.chr17_random 831929 32 + 2618010 GGCAGCCGGGCCTGGCCAGAGAAGCAACACAC s panTro1.chr19_random 10817811 32 - 57627672 GGCAGCCGGTCCTGGCCAGAGAAGCAacacac s rn3.chr2 218745659 32 - 258222147 GACAGACAGACGAGACAGAGGCATGAATGCAC a score=17086.0 s hg17.chr17_random 831961 54 + 2618010 ATGTGCACAGACATGTTTACCCACATACACGTGTGCACGCACGTGCACAAACAC s panTro1.chr19_random 10817843 54 - 57627672 acgtgcacagacatgtttacccacatacacatgtgcacgcacgtgcacaaacac s mm5.chr10 39573640 54 - 130633972 ATGCATATTTATATGTGTGCCCACACACAAGTGTGTGCGCACACACACAAAGAC s rn3.chr2 218745691 54 - 258222147 ACATGCACAGACACATGTACCCATAGACACACGAGCACTCATGTGTGCAAACAC a score=3019.0 s hg17.chr17_random 832015 15 + 2618010 GTTGCAGGCAGGCAT s panTro1.chr19_random 10817897 15 - 57627672 aTTGCAGGCAGGCAT s mm5.chr10 39573694 15 - 130633972 ATTATAAGCAGACAT a score=11201.0 s hg17.chr17_random 832030 135 + 2618010 GTTGACGCCTCAGGCAGCGGAGGACCCTGACTCTGGGTGCTGCTGACCCGGGCAAGGCCCCACTGTGATTCGTGCCATGACCTCAGAATGTCACTGGTGCTTAGCACCTATCTGCTCTCTGGCCTGCGTCAGTGG s panTro1.chr19_random 10817912 135 - 57627672 GTTGACGCCTCAGGCAGCAGAGGACCCTGACTCTGGGCCCTGCTGACCCGGGCAAGGCCCCATTGTGATGCGTGCCATGACCTCAGAATGTCACTGGTGCTTAGCACCTATCCGCTCTCCAGACTGCGTCTGTGT a score=15399.0 s hg17.chr17_random 832165 193 + 2618010 TCTACAGCAGTTACACACAGGCAGTGGTATCTGTGAGCAGCTCTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATGA-----CCCAGGCCAGCTGATTCA--TC---AGAATCAGGTGAGCGTGACCTGCTCTCTTCCCTCCAGGCGGACT--TGGGGACAGTGGCTAC--GGTGC-GGGCGGTGTTGGCCTCTGTGGGGCAGCTAC s panTro1.chr19_random 10818047 190 - 57627672 TCTATGGCAGTTACACACACGTAGTGGTGTTCACGAGCGGTTTTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATAA-----CCCAGGCCAGCTGATTCA--TC---AGAATCAGGTGAGTGTGACCTGCTCTCTTCCCTCCAGGCTGACT--TGGGGACAGTGACTAT--GGTAT-GGGCGGTGTTGGCCTCTG---GGCAGCTAC s danRer1.chrNA 154481145 189 - 390413307 TCTACTGCAAGTCCAGGGAGAGAGGTGGACCTCCAGGTAGCTTACTGGGATCAGAGGCCTCTAGGTGGAGGGCCATGAGGCACCCTGGGGCCTCTACTGCAAGTCCAGGGAAAGAGGTGGA-----------------CCCCCAAGTAGCTTACTGGGGTCAGAGGCCCCTAGGTGTAGGGCCATGAGGCACCCTG--GGGCCTCTAC a score=23114.0 s hg17.chr17_random 832358 281 + 2618010 CGAGGAGGGTCATCCCtgagcactcaccaggcgcccgttctacactgcccgtgtagacgattggctctttcgtctccatggtggcttcgtagagtgggtgctgttcccaaatgtccccattcgacagatgagacgtctggggtcagagaggcagtaaccggcctgggaatccggacatgaccctgagttttgctctcagccctgccgtgtgctgtgctggaattcaggcctgaaccctgtgacctccctgccctagatcccaaatctgCCCAGGTTTCCCA s panTro1.chr19_random 10818237 281 - 57627672 AGAGGAGGGTCATCCCTGAGCACTCACCGGGCGCCCGTTCTACACTGCCCATGTAGACGATTTTCTCTTTCGTCTTCATGGTGGCTTCGTAGAGTGGGTGCTGTTCCCGAATGTACCCATTCGACAGGTGAGCCGTCTGGGGTCAGAGAGGCAGTAACTGGCCTGGGAATCCAGACAAGACCCTGGGTTTTGCTCTCAGCCCTGCTGTGTGCCATGCTAGACTTCAGGCCTCAACCCTGAGACCTCCCTGCTCTAGATCCCAAATCTGCCCAGATTTCCGA a score=14514.0 s hg17.chr17_random 832639 256 + 2618010 TCCCGATGGGGCAGAGCCTGGTCCTGGCAGAGCCACTGGTA-----TAGAGCCACTGGTACAGATCCACTG-----------------ACGGTCCTCAGAACACCT--CTGTGCCC--------TAAGCTGG-GTCCTGATGGTCGCTGTGGGCCCCAC------------TGAACACACATGGTCCCTTGTCCGGG-----------GGAGCCTGCTGCCCTTGGG----------------------------CAGCTGT--------GGAAAATGAAGGAGCCCTGGAGGGCTGGCTGAGGGGAGACTATCTTCCCTTGTGTTCAAAGGGGTCCGGGCACTAGGG s panTro1.chr19_random 10818518 269 - 57627672 TCCCAATGGGGCAGAGCCTGGCCCTGGCAGAGACACTGGGA-----TGGA--------------TCCACTGTGGGTGGGGAGGAGGGAAGGGCCCTCGGAACACAC--CTGGGGCC--------TAAGCTGG-GTCCTGATGGTCACTGTGGGACCCAC------------TGGACACACACAGTCCCTTGTCTGGGAGTGGCATG-GGGAGCCTTCTGCCCTTGGG----------------------------CAGTTGT--------GGAAAGTGAAGGAGCCCTGGAGAGCTGGCTGAGGGGAGACTATCTTCCCTTGTGTTCAAAGGGGTCCAGGCACTGGGG s danRer1.chrNA 154481371 323 - 390413307 TCCTGCT--GTCAGAGGCC--CCTTGGTGGAGGGCCAGGGGCACCCTAGGGCCTCTACTGCAAGTCTAGGGAGAGAG-----------GTGGACCCCAGGGTAGCTTGCTGGGGTCAGAGGCCATAAGGTGGAGGCCAAGGGGGCACCCTGGGGCCTATACCGCAAGTCTATGGAGAGAGGTGGACCC----CTGGG--TAGCTTGCTGGGGTCATAGGCCCCTAGGTGAAGGGCCAGGGGGCACCCTAGTGCCTCTACTGCAAGTCCAGGGAGAGAGGTGGACCCCTGGGTAGCTTGCTGAGGTGAGAGGCCCCTAGGTGAAGTGCCAGGGGGC----ACCCTAGGG a score=54723.0 s hg17.chr17_random 832895 776 + 2618010 TTCTCCCCAGGTATTTCTTGCTCTGCGTGGTCCTCTTGAGGCCTCGCCCTCCTTTTGCCTCGAGTATTCCCAGGAGGGACGGTCCATCCAGCTGTTCTCCAGGACCAAGGACCCACTGTTCTTCCTCAGTGACCCAGGAAAATGAAGCCTCCTCCTGTTGGGACGGCTCAGAATGGTGGACTCCACAGTCCCTCCGCGAGAGACGTGGTTTCCATGCGTACAATAG-----------------ATCTTCCTCATCCCCCAAACCCAACACCCTCCTGCTCAACAGGCGTTATTCCTAAAGTGGCTTCACTGTTCAGACTGAAGAGCCACGGTAGCCAAAGTGATGAGCGGAGTAGAACCGAGCAGTCGGGAGAGATCTTGTTCCCTGTAGGAAACTGGGCATCGCTGAGGCCCTGAGCATCCCAGGAGGCCGATTGCACAGAGACCTCTGGTCGCTGACCCCAGTCTGCCTCCACATCCCTGGAATAGCCCATCATGGGCCCTTCACCCTTGGCAGGTGGAAACCATTCAACCTGCTGGGGCCGGTGTGTCCCCATTTCATGGCATTGGGGGACAACAGGATTCTCTGTCTAGGTCCCACTGTACTCAAGTCCTTGGGAAGATGCCCACCCCTGCTTGGGACTTGAGACTCCAGAGAC---TGGAGCAGCTGTGGGCCACTGGGTCTGGCCCCTTTTTCCCTGGGGGCGGCGGTGGAATGGGGGTTACGCAGCCAGCCAGCATCTGGGAGCCCGGCGAGAGCGGTTCAGGTGTTCTCCGAAGCCGCCGCGTACAGT s panTro1.chr19_random 10818787 782 - 57627672 CTCTCCCCAAGTATTTCTTATTCTGTCTGGTC-----------TCGCTTTCCTTTTGCCCTGAGTATTCTCAGGAGGGACGGTCCATCTAGATGTTCTCCAGGAGCAAGGACCCACTGTTCTTCATCAGTGACCCAGGAAAATGAAGCCCCCTCCTGTGGGGACAGCTCAGAATGGTGGAGTCCACAGTCCCTCCCTGAGAGACATGGTTTCCATGAGCACAGTGGCTGCTTTGGAGACAGTAATCATTTTCATCCCCAAAACCAAACACACTCCTGCTCAAATGGTGTTATTCCTAAAGCAGCTTCACTGGTTAGACTGAAGGGCCATGGTAGCCCAAGTGATGAGCGGGGTAGAATGGAGCAGTCAGGAGAGATCTTGTTCCCCGTAGGAAACTGGGCATCTCTGTGGCCCTGAACATCCCAGGAGGCCGATCGTACAGAGACCTCTGGTGCCTGACCGCAGTTCACATCCACATCCCTGGAATAGACCATCACAGGCTCTTCACCCTTGGCAGGTGGACACCATTCAACCTGCCGGGGCAGGTGTGTGCCCGTTTCATGGCATATGGGGACAACGGGATTCTCTGTCCAGGTCCCACTCTTCTCGAGTCCTTGGGAAGATGCCCACCCCTGCTTGGGGCTTCAGACTGCAGAGACCCATGG---AGGTGTGGGCCACGGGGTTTGGCCCCTTTTTACCGGAGTGCAGTGGTGGAATGAAGGTTATACAACCAGTCAGCATCTGGGAGCCCGGTGGGAGCGGTTCAGGTGTTCTCCGAAGCTGTCGGGTACAGT a score=16486.0 s hg17.chr17_random 833671 186 + 2618010 GTGACCTTTAGACAATTCTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGCAGTTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACGAAAAGGTACAAGTCGGTCTGCTTCTTGGAGGGAGGCCTCTTCCAGTGTGCCCTGGTCAAAGGGTCCTGGGCTCCCTAGGAGCACAGGGCA s panTro1.chr19_random 41329371 186 + 57627672 GTAACCTTTAGACAATTTTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGTAGCTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACAAAAAGGTACAAGTCAGTCTGCTTCTTGGAGGGAGGGCTCTTCCAGTGTGCCCTGGTCAAAGGGTCCTGGGCTCGCTAGAAGCACAGGGCA a score=72922.0 s hg17.chr17_random 833857 940 + 2618010 GGGACGGGTGGCCAATGCCCCCAGGCCCTTGCACCCTTTACCTTGGACCCCTCACCAAGGCTCCCTCTGGGCTACAGGGACACCGAGCTGGGCTGCCAGAGGACAAGGGGCCTAAGCC--------TTTTCGAAGCTACAACAACAACGTCGATCATTTGGGGATTGTACAGTGAGTC---CTCTGCACTCCCCTCACCCCTAAAGCACCTGTCTCAGCTCAGGGATGGGTTTGCTTTTAGAAAGGCCTTTCTGACGCAGGACATGTCTCACCAGGTCGGGTCAACCTCCTTTCCAGGGACAGAACTCCTCCCTGACTCCCCTGCAGGTCCAGCCCGAGGTTGTT---AGGCCAGAGGTGTGGGGCCCATCTAGGGAGCCGGTGGGAATGGAGACTGGGCTAGGTCAGGCCCCTGGGCGCTCAGCAGTTCTGTCGGCAAGTGAGCACAAGAGGAGCGGGGCAGCCTGAGGGTCTGGCCCTGTCTACTTGGAGACAACCCCGGTGAGATGCAAGGGTTATGGCCACAGGGTGAGGGGACGCCTGGCCCAGCCTCAGGGCTGTTGTCCAGCAGGTCTCT-GAGGGCCCACCTGCCCCTGTTCTCCCCCATTCCCCTAGAGCTACAGCCCTCACTGTCCC-----GTGAGGGGAAAAGGCATGGTGACAATGGGGGCTGTAGCCCTAGGAGAACGGGGGAGAAGATGGGCAGGGCCCCGTTCTGGGCATCTCACGGTGAGGCCAGGGAGGCAGCAGGGCTCGCGGCTAAAGA-CCTGGGTCTGGTGCTGGGAAGGGATCTGGGGCCAGGTAAGAGGAGCCCAGCCAGGAGCCCATCCCTCAGGGATCACAGGATGGAGAGACAGAGGATCCCTGGGGAGGTAGGGCGGGAGGGAGCTGACGAGCGGTGCCACTTCTGAAACGCAGGGTGTGTGGCTCGGGTGCAGGGAGAGGCAGGTGGATGCT s panTro1.chr19_random 10819755 950 - 57627672 GGGACGGGTGGCCAATACCCCCAGGCCCTTGCACCCTTTACCTTAGACCCCTCACCAAGGCTCCCTCTGGGTTACAGGGACACCGAGCTGGAATGCCAGAGGACAAGGGGCCTGAGCCCGTTGGAATTT-----------ACAGCAGCGTTGATCGTTTTGGCATTCTGCAGTGAGTCATCCTCTGTGCTCCCCTCACCCCTAAAGCAGCTGTCTCAGCTCAGGGATGGGTTTGCTTTTAGAAAGGCCTTTCTGATGCAGGACATGTCTCGCTAGGTCAGGCCAACCTCTTTTCCAGGGTCAGAACTCCTCCCTGGCTCCCCTGCAGGTCCAGCCCGAGGTTGTTGTTAGGCCAGAGGTGCAAGGCCCATCTAGGGAGCTGGTGGGAATGGAGACTGGGCTAGGCCAGGCCCCTGGGCTCTCAGCAGTTCTGTCGGCAAGTGAGCACAAGAGGAGCGGGGCAGCCTGAGGTTCTGGTCCTGTCTACCAGGAGACAACCCCAGTGAGATCCAAGGGTTGTGGCCACAGGGTGAGGAGACACCTGGCCCAGTCTCAGGGCTGTTGTCCAGCAGGTCTCTCCAGAGCCCACCGGCCCCTGTCCTCCTCCATTTCCCTAGAGCTACAGCCCTCACTGTCCCCATGGGGAAGGGGGAAAGGTGTGGGGACAGTGGGGGCTTTGGCCCGAAGAGAATGGGGGAGAAGACGGGCAGGGCCCTGCTCTGGCCATCTCACAGTGAGACTAGGGAGGCAGCAGGGCTTGTGGCTAAAGACCCTGGGTCTGGTGCTGGGAAGGGATCTGGGGCCAGGTAAGAGGAGCCCAGCCTGGAGCCCATCCCTCAGGGATCATAGGATGGAGAGACAGCGGATGCCAGGCAAGATAAGGTGGGAGGGAGCTTATGAGGCGTGCCACTTCTGAAACACAGGGTGTGTGGCTCGGGTATAGGGAGAGGCAGGTGGATGCT a score=46182.0 s hg17.chr17_random 834797 490 + 2618010 GGGAGGTCAGAACCTGCAAGGGCCTTGGGGCTGTCAAGTGGGGTGGGCCCCTGGTGCAGCCAGAGTACACCGGGCAGGTCTCAGGGCAGGCTCCCTTGACCCTGGCGGGGGGATGTGGTCACTCCCTGAGGGACTCCTGTCAGGGCCCGGTCGCCCACCCTGGGCGGCCCCCATCCCATCTCAGGGCTAACCTTTCTCAGCTCCAGCAGAAAGCACCACCTCGAGTCCAGGACGGGCAGCCCCATTGGGCAGCCTGACCGCCCCCCACGCCAGGGGCCCCAGTAACCCCGGCCAGGCTGTCCCTACA---CTCCTTCTTCTCCCAGGTCCTGCCCCTCCTGGGAGTCAGCCCCACAGGAAGGCCCTTGTCCTCCCTTCCCTGTGCCTTCTCCTGGGCTGAGCCCTGAGCTGGAAAGGGACAGAGCCAGTCCTTTCTGGGGGTCGGCACCCAGGCTGGGGCCGCTCCAGGCCCCGTGCAGTTCCTCAGCTCTGC s panTro1.chr19_random 41330502 493 + 57627672 GGGAGGTCAGAACCTGCAAGGGCCTTGGGGCTGTCAAGTGGGATGGGCCCCTGGTGCACCCAGAGTACACCGGGCAGGTCTCAGGGCAGGCTCCCTTGACCCTGGCGGGGTGATGTGGTCACTCCCTGAGGGACTCCTGTCAGGGCCCGGTCGCCCACCCTGGGCGGCCCCCATCCCATCTCAGGGCTAACCTTTCTCAGCTCCAGCAGAAAGCACCACCTCGAGTCCAGGACGGGCAGCCCCATTGGGCAGCCTGTCCGCCCCCCACGCCAGGGGCCCCAGTAACCCCGGCCAGGCTGTCCCTACACTCCTCCTTCTTCTCCCAGGTCCTGCCCCTCCTGGGAGTCAGCCCCACAGGAAGGCCCTTGTCCTCCCTTCCCTGTGCCTTCTCCTGGACTGAGCCCTGAGCTGGAAAGGGACAGAGCCAGTCCTTTCTGGGGGTCGGCACCCAGGCTGGGGCCGCTCCAGGCCCCGTGCAGTTCCTCAGCTCTGC a score=6582.0 s hg17.chr17_random 835387 59 + 2618010 TATATAATTA-TTGCAATATGTTGTAAGAAATGTTTCCTAA-TTAAGATTTTTATGAAATT s panTro1.chr19 20288164 59 - 82489036 TATATAATTA-TTGCAATATGTTGTAAGAAATGTTTCCTAATTTAAGA-TTTTATGAAATT s canFam1.chr9 16541642 50 + 53642819 TACATAATTAGTTGCAACA---TATGAAAAATG-CTCCtaa-ttaa---tt---tgtaatt a score=11044.0 s hg17.chr17_random 835446 141 + 2618010 AAACGTAtttat--------ttatttattttgagatagagtatcactctgttaccaggctggagtgtagtggcaggatttcagcccactgcaatctctgcctcccgggtttaagcaattgtcgtgcctcagccccctgagtagctggaa s panTro1.chr19 20288223 147 - 82489036 AAACGCatttatttatttaattatttattttgagatagagtttcactctgttaccaggctggagtgtagtggcaggatttcagcccactgcaatctctgcctcccgggttaaagc-attatcgtgcctcag-cccctgagtagctggaa a score=527.0 s hg17.chr17_random 836210 5 + 2618010 AATAG s mm5.chr11 24709798 5 - 121648857 AAAAT s rn3.chr10 24719973 5 - 110733352 AAAAT a score=100.0 s hg17.chr17_random 836214 1 + 2618010 G s danRer1.chrNA 35837936 1 + 390413307 G a score=30619.0 s hg17.chr17_random 836215 219 + 2618010 TTTAAAATCAAAGTTTAAGTAGAAAA-CAT-TATTTTA---------TTTGGCTCATTGGTTA-GATG----TAAGTGATGTGAAATACTTAAACAT-CCATTATTGTTTTTAATATAAT--TTGGAAAATATGAGTTGCTTT---GGATTA-TTAAAAC--TTCATTTATTTGTACCATTGATGCATAAATTCTCAGTCTAGGTTTTAGCGAAGTCTGGATTTT-----AAAAAATTGACTGTGATAT----- s mm5.chr11 24709803 186 - 121648857 TTTTATATAAAGACTTAAGTAGAGAA-----GATTTTA---------TAT-----ATTGAT------------AAATAGTATGAAAACTGTAAACAT-GTATTATTGCTTTTAATCTAAT--TTAGAAAATATGAGTTGCTTT---GAAGTA-TTGAAATAACTCATTTATTTTTACCATTG---TATAAATAATTAATCAAGGTTTAA----------------------AAAAAGTGCATGAAACAT----- s rn3.chr10 24719978 194 - 110733352 TTTTATATAAAGATTTAGGTGGAGAA-----GATTTTA---------TAT-----ATTGTTCA-GATG--TTTAACTAGTATGAAAAATATAAGCATATTATTATTGTTTTTAATATAAT--TTAGAAAATGTGAGCTGTTTT---GAAGTA-TTAAAACAACTCACTGATTTTTA-CATTG---TATAAATAATCAATCTAGGTTTA-----------------------CAAAATTACATAAAACAT----- s canFam1.chr9 16541692 224 + 53642819 ttttaaataaaaGTTTAAGTAGAAAA-AATGGCTTTTA---------TTTAGCTCATTGGCCA-GATT--TTTAAAT-TTTTAAAATGCTTAAGTGT-TTATTGTTGCTTTTAATATAAT--TTGGAAAATGTGAATCACCTT---GGAATACTTAAAACTACTTATTTATTTTTGCCATTGATCTATAAATACTCAGTCTAGGTTTTAGTGATGTCTGGGTCTA-----AAAAAATTCCCTGTGACAT----- s danRer1.chrNA 35837937 240 + 390413307 CCTAAAATAAACGCTTTGGTACAGAGTTAT-TATTTTAAAACAAACCTGT-----GTTTGTAATGATGGATGTAGGTGTCACAAAATACTTTTTAAA-TCAGTGTTTTTATTAATATGATCATTATTTATTGTGAACAACACTTAATAAATA-CTGAAAT--GTCCTTAATACACACTTTTTTTTTATCAATTA-CAGT---GCTTCCCGCTAGGGCTGCTCTATTATGGGAAAAATCATAATCACGATTATTT a score=1549.0 s hg17.chr17_random 836434 11 + 2618010 TAGTTCAAGTC s mm5.chr11 24709989 11 - 121648857 TAGCCCAGGTT s rn3.chr10 24720172 11 - 110733352 TATCCTAGGTT s danRer1.chrNA 35838177 11 + 390413307 TGGTCATAATT a score=488.0 s hg17.chr17_random 836445 20 + 2618010 TTACGAACATCATTATTATT s danRer1.chrNA 35838188 15 + 390413307 TTA-----ATCACAATTATT a score=3465.0 s hg17.chr17_random 836722 36 + 2618010 tgctgggattacaggtgtgtgccaacacacctggcc s panTro1.chr19 20289683 36 - 82489036 Tgctgggattacaggtgtgtgccaacacacctggcc a score=16352.0 s hg17.chr17_random 836758 57 + 2618010 --AAGTTGTATATACT---ATTAATCTAGGCTATTTCTGACACT-GTTGATTTTCCTTTTCCC s panTro1.chr19 20289719 60 - 82489036 --aagttgtatatACTGGGATTAATCTAGGCTATTTCTGACACT-GTTGATTTTCCTTTTCCC s mm5.chr11 24710001 49 - 121648857 --AAGGTGAACATATT---------TTGTACTATTTCTGATAATAATTGGTCTTTCTTTT--- s rn3.chr10 24720184 50 - 110733352 --AAGGTGAATGTATT--------TTTGTGCTATTTCTGATAATAGCTGTTTTTTCTTTT--- s canFam1.chr9 16541932 57 + 53642819 --AAGATGCACATGTT---ATTAACCTAGGCTATTTCTGACACT-GCTGGTTTTTCTTTTCCC s danRer1.chr11 6185680 46 + 27258617 GGATCATATAAACATT-----AAGTCTGAAC--TCTCTGTCATT-GTT--TTTAAC------- a score=0.0 s hg17.chr17_random 836815 3 + 2618010 CTT a score=2820.0 s hg17.chr17_random 836815 3 + 2618010 CTT s panTro1.chr19 20289779 3 - 82489036 CTT s mm5.chr11 24710050 3 - 121648857 CTT s rn3.chr10 24720234 3 - 110733352 CTT s canFam1.chr9 16541989 3 + 53642819 CTT a score=136320.0 s hg17.chr17_random 836818 95 + 2618010 AGGTGAGGCAGGCGACTAATCAGATTGTGATGAATTGTGCTGATATTGATATTATTACAGCTTCATATGCACCAGAAGGAGATGAAGGTAAGAGC s panTro1.chr19 20289782 95 - 82489036 AGGTGAGGCAGGCGACTAATCAGATTGTGATGAATTGTGCTGATATTGATATTATTACAGCTTCATATGCACCAGAAGGAGATGAAGGTAAGAGC s mm5.chr11 24710053 95 - 121648857 AGGTAAGGCAGGCAACCAATCAAATTGTGATGAATTGTGCTGATATTGACATTATTACAGCTTCATATGCCCCAGAAGGAGATGAAGGTAAGAAC s rn3.chr10 24720237 95 - 110733352 AGGTAAGGCAGGCAACCAATCAGATTGTGATGAATTGTGCTGATATTGACATTATTACAGCTTCATATGCGCCAGAAGGAGATGAAGGTAAGAAC s canFam1.chr9 16541992 95 + 53642819 AGGTGAGGCAGGCAACCAATCAGATTGTGATGAATTGTGCTGATATTGACATTATTACAGCTTCATATGCACCAGAGGGAGATGAAGGTAAGAGT s fr1.chrUn 199211318 95 - 349519338 AGGTTACACAAGCCACAAATCAGATAGTGATGAACTGTGCTGACATAGACATCATCACAGCCTCTTTTGTACCTCAAGGAGGAGAAGGTGAGTAG s danRer1.chr11 6185726 95 + 27258617 AGGTTACACAAGGGACAAACCAGATTGTGATGAACTGTGCTGATATAGACATAATTACTGCATCTTTTGTGCCTGACGGGGGGGAAGGTGAGTGC a score=8965.0 s hg17.chr17_random 836913 17 + 2618010 TG---TTTTCCATTTTAATT s panTro1.chr19 20289877 17 - 82489036 TG---TTTTCCATTTTAATT s mm5.chr11 24710148 15 - 121648857 TG-----TTCCATTTTAATT s rn3.chr10 24720332 17 - 110733352 TG---TTTTCTGTTTTTATC s canFam1.chr9 16542087 16 + 53642819 TG---TTTTCCA-TTTAATT s fr1.chrUn 199211413 20 - 349519338 TAAGACTTTTTATTGCAATT a score=8611.0 s hg17.chr17_random 836930 88 + 2618010 TGCTGTCTGCATGTGCAT-ATGTG------GGGTGTGTGTGTGTGT----GAGAGAGAGAGAGAGAGAC--------ATTTTCAGGTTAAGACTTCAGTGTTTGTTA s panTro1.chr19 20289894 98 - 82489036 TGCTGTCTGCATGTGCAT-ATGTGGGGGGCGGGTGTGTGTGTGTGTgagagagagagagagagagagaC--------ATTTTCAGGTTAAGACTTCAATGTTTGTTA s mm5.chr11 24710163 67 - 121648857 TG------------------------------------GTATGTGA----GAGACAGATAGAGCCGGACTGACTTAGACTTTCAGTCTGAAACTTCTATACTGCCTG s rn3.chr10 24720349 67 - 110733352 TG------------------------------------GTATGTGA--GAAAGACAGACAGAGTCTGACTGACTG--GCTTTTGGAATGAAACTTCAATACTGCTTG s canFam1.chr9 16542103 71 + 53642819 TGCTGTCTGTGTGTGTATGATGT---------------GTGTGTGG-------------TGATAAATAC--------ATTTGCAGATTAAGATATCAGTTTTTGTTG a score=3916.0 s hg17.chr17_random 836932 31 + 2618010 CTGTCTGCATGTGCATATGTG------GGGTGTGTGT s panTro1.chr19 20289896 37 - 82489036 CTGTCTGCATGTGCATATGTGGGGGGCGGGTGTGTGT s mm5.chr11 24710165 2 - 121648857 -----------------------------------GT s rn3.chr15 92657366 31 + 109774626 CTCTTTATATGTGTATATGTG------TAGAGTGTGT s canFam1.chr9 16542105 25 + 53642819 CTGTCTGTGTGTGTA------------TGATGTGTGT a score=2784.0 s hg17.chr17_random 837018 5 + 2618010 CTTTA s panTro1.chr19 20289992 5 - 82489036 CTTTA s mm5.chr11 24710230 5 - 121648857 CTTTA s canFam1.chr9 16542174 5 + 53642819 CTTTA a score=2030.0 s hg17.chr17_random 837023 8 + 2618010 GAAATGGG s panTro1.chr19 20289997 8 - 82489036 GAAATGGG s canFam1.chr9 16542179 8 + 53642819 GAAATAGG a score=29272.0 s hg17.chr17_random 837031 308 + 2618010 TAAATTCagctgggtgaagtggctcacgcctataatcccagcactttgggaggctgaggcgagcagatccctgagcccatgcgtttgagaccagcctgggccacatggcgaaacaaaaacaaacaaacaaacaaaaatattagctaggcatagtggtgcgtgcctgtagtcccagctatttgggaggctgaggtgggaggatctattgagcccaggtggccgaggctgcagtgagccatgactgcgccgctgcactccagcctgtgcgacagagtgagaccctgactcaaaaaaagaaaaagaaaaaG s panTro1.chr19 20290005 308 - 82489036 TAAATTCagctgggtgaagtggctcacgcctataatcccagcactttgggaggctgaggcgagcagatccctgagcccatgagtttgagaccagcctgggccacatggcgaaacaaaaacaaacaaacaaacaaaaatattagctaggcatagtggtgcgtgcctgtagtcccagctatttgggaggctgaggtgggaggatctattgagcccaggtggccgaggctgcagtgagccatgactgcgccgctgcactccagcctgtgcgacagagtgagaccctgactcaaaaaaagaaaaagaaaaaG a score=456.0 s hg17.chr17_random 837339 4 + 2618010 GGTA s panTro1.chr19 20290313 4 - 82489036 GGTA s rn3.chr10 24720558 4 - 110733352 AGTT a score=15623.0 s hg17.chr17_random 837343 55 + 2618010 AAATGTTTATGGGAAATATTGAATAGTATAACCTAACAGTATTGTGAAATAAATG s panTro1.chr19 20290317 55 - 82489036 AAATGTTTATGGGAAATATTGAATAGTATAACCTAACAGTATTGTGAAATAAATG s rn3.chr10 24720562 55 - 110733352 AGTTGTTTATGGGACTATTTGAATAGTATTATCTAAGTGTATTCTGAGATAAATG s canFam1.chr9 16542225 47 + 53642819 AGATGTTCATGGGAAATATTTTA----ATAATCT----GTACTATGAGATAAAGG a score=2334.0 s hg17.chr17_random 837398 10 + 2618010 TCACAATTTA s panTro1.chr19 20290372 10 - 82489036 TCACAATTTA s rn3.chr10 24720617 10 - 110733352 TCAGAATTTA a score=28735.0 s hg17.chr17_random 837408 315 + 2618010 TTTT-ACTTTTAAAtttatttttatttttatttttttttgagacagagtcttgctctgatgcccaggctggagtgcagtggcatcatctaagctcactgctatctctgcctcgtgagttcaagcagttctccctgcctcagcctcctgagtggctgagattacaggtgtccaccatcatacctagctaatttttgtatttttagtagagacagggttttgctatgttggccaggctggtcttgaactcctgatctcaggtgatctgcatgcctcccaaagtgctgggattacagatgtgagccaccacacccggGC s panTro1.chr19 20290382 316 - 82489036 CTTTAACTTTTAAAtttatttttatttttatttttttttgagacagagtcttgctctgatgcccaggctggagtgcagtggcgtcatctaagctcactgctatctctgcctcgtgggttcaagcagttctccctgcctcagcctcctgagtggctgagattacaggtgtccaccatcatacctagctaatttttgtatttttagtagagacagggttttgctatgttggccaggctggtcttgaactcctgatctcaggtgatctgcctgcctcccaaagtgctgggattacagatgtgagccaccacacccggcc a score=25662.0 s hg17.chr17_random 837723 97 + 2618010 AAATGTCACAATTAAAATTCCACTTCCAAGATTAACTTATTTTGTGGTACTAGGGAAATCATATTTTCATAAGTATAAAATGAATATAATAC---GCATA s panTro1.chr19 20290698 97 - 82489036 AAATGTCACAATTAAAATTCTACTTCCAAGATTAACTTATTTTGTGGTACTAGGGAAATCATATTTTCATAAGTATAAAATGAATATAATAT---GCATA s rn3.chr10 24720627 90 - 110733352 AATTCTCGAAACTTAAATTCTCCTTGAAA---CAACTTATGTAGTTATCCTA-GGAAATCACATTTT-ATAAATGTAAGATGAATATATAA-----CATA s canFam1.chr9 16542272 99 + 53642819 AAATGCCACAGTCT-AATTCTGCTTCAAACATTAACATATTTTGTGATGCTAGGCAGATTACATTTTCATAAATGTAAAATGAATAGAATACCATGCATA a score=302.0 s hg17.chr17_random 837820 2 + 2618010 AT s panTro1.chr19 20290795 2 - 82489036 AT s rn3.chr10 24720717 2 - 110733352 AC a score=22935.0 s hg17.chr17_random 837822 69 + 2618010 AAAGCTGATGAGTTATTTGAAAAATTAAGTACTTTGAACATGAAA----GGCTCCTCAAA---------------GAGGCTTCGTTTT s panTro1.chr19 20290797 69 - 82489036 AAAGCTGATGAGTTATTTGAAAAAGTAAGTACTTTGAACATGAAA----GGCTCCTCAAA---------------GAGGCTTCGTTTT s rn3.chr10 24720719 69 - 110733352 AAAGCTGATGAATTATTTTTTAAATTAAGTACTTTGAACATGAAA----GTTTCATTAAA---------------GAAGCTTAGTTTT s canFam1.chr9 16542572 87 + 53642819 TAAGCTGAAGAATTATTTTAAAAA-TAAGTGTTTTGAACATGAAAGATTGGTTCATCAAATGGCTTAGTTCATATGAGGTTTTCTTTC a score=10663.0 s hg17.chr17_random 837891 53 + 2618010 TATGTTTTTCTTAAAGTTTTTTTTTCTTTTTGTACTATAGTTTAAAATTGAGA--- s panTro1.chr19 20290866 52 - 82489036 TATGTTTTTCTTAAAG-TTTTTTTTCTTTTTGTACTATAGTTTAAAATTGAGA--- s rn3.chr10 24720916 42 - 110733352 TGTATTTTTCTTAAAAACACTTCACTACCTTGAACC-----------TTGAGA--- s canFam1.chr9 16542843 56 + 53642819 TGTGGTTTTCTTAAAGTGTTTTTTCCTTCTTGAACAATAGATTAAATTTGGGAGAA a score=49760.0 s hg17.chr17_random 837944 146 + 2618010 TAAGTCATACTCCTAATTCAGAGAAAAACATTTGCTTTATGAGAC--AATATGAAGATTAGAAGCTAAATAATGGAGTTAGTTACAGGGGAAGAACATGCTAAAAAGAAACATG--GTATAGAATGTGGA-ACTCG-ATTAGTGTCTATAAA s panTro1.chr19 20290918 146 - 82489036 TAAATCATACTCCTAATTCAGAGAAAAACATTTGCTTTATGAGAC--AATATGAAGATTAGAAGCTAAATAATAGAGTTAGTTACAGGGGAAGAACATGCTAAAAAGAAACATG--GTATAGAATGTGGA-ACTCC-GTTAGTGTCTATAAA s mm5.chr11 24710345 137 - 121648857 TAAGTCTTGCTTATAATT--GGGAAAAATACTTG----ATGAGCCCAAGTGTTAAGGTTAGAAGTTGCATGATGGTGTTAGTCATGAGGG-------TGTT-AAAAGAGCCATGATGTTTTTCTTGTGGA-AGTCCTATGAGCATCTTTAAG s rn3.chr10 24720961 137 - 110733352 TAAGTCTTACTTATTATT--GGAAAAAATACTTC----ATGAGGCCAGATGTTAAGGTTAGAAGTTGGATGATGGTGTTAGTTGTGAGAA-------TGTT-AAAAGAACCACGATGTATTTTGTGTGGAGACTCT-CTTAGCATCTTTAAA s canFam1.chr9 16542899 141 + 53642819 TGAATCTTACTTATAATC-GAGAAAAAATATTTGCCTTATGG-----AATGTGGAGGTTAGAAATTAGATGACCAAGTTAGTTACATAGTAAGAATATGTTAAAAAGAAACATTACATAGAGTGTGTGGG-AA----CTCAGCATCTTTAAA a score=91.0 s hg17.chr17_random 838090 1 + 2618010 A s canFam1.chr9 16543040 1 + 53642819 A a score=546.0 s hg17.chr17_random 838090 2 + 2618010 AT s panTro1.chr19 20291064 2 - 82489036 AT s rn3.chr10 24721098 2 - 110733352 AT a score=946.0 s hg17.chr17_random 838092 10 + 2618010 GAGAACTGTt s rn3.chr10 24721100 10 - 110733352 GAGAACTGTT a score=26721.0 s hg17.chr17_random 838413 137 + 2618010 GAGAACTGTTTTAGACCTTATAATTTTAGTATGAA--------AGTAGTCCATTTTGACTGGAAATCTTATTCCCGTATGAGCTGATTTTTAAATAGATACCAAGTTTGGCATAAACTCTTACAAGTACATCAGTATTGGAGCTG s panTro1.chr19 20291066 137 - 82489036 GAGAACTGTTTTAGATCTTATAATTTTAGTATGAA--------AGTAGTCCATTTTGACTGGAAATCTTATTCCCGTATGAGCTGCTTTTTAAATAGATACCAAGTTTGGCATAAACTCTTACAAGTACATCAGTATTGGAGCTG s canFam1.chr9 16543042 143 + 53642819 GAGAACTATTTTAGACCTTGTAATTACAATAAGGATTAAATTGAGTAGTCAGTTTTGGCCTGAAATCTTATTCCCATATAAGCTACATTTTAAAAAGTTGTCAAGTTTGGCATGAA--CTTACAAGTAAATTGGAACTGGAATTG a score=5682.0 s hg17.chr17_random 838550 90 + 2618010 GATTGCtttttactttttttttttttgagaga--gtc-tcgctctgtca-cccaggct-ggggggcagtggcatgatctcaactaccacaacctc s panTro1.chr19 20291203 90 - 82489036 GATTGCtttttac-----ttttttttgagagaagatcttcgctctgtcaccccaggctgggggggcagtggcatgatctcaactaccacaacctc a score=19896.0 s hg17.chr17_random 838640 227 + 2618010 tgtctcctggtctcaagccatcctcccacctcaccctcccaagtagctgatattacaggcgtgtaccaccatgcctggctaatattcgtatttgtatttttttatagatat---ggggggggtcttcctatattgcccaggctggtcttgaactcctgggctcaagggatccgacctctttggcctcgcaggttgctgggattacaggcaagagccaccacacctggTTG s panTro1.chr19_random 35308454 229 - 57627672 tgtctcctggtctcaagccatcctcccacctcaacctcccaagtagctgatattacaggcgtgtaccaccatgcctggctaatattcgtatttgtatttttttatagatatgggggggggggtcttcctatattgcccaggctggtcttgaactcctgggctcaagggatctgacctcttcggccttgcaggttgctgggattaca-gcaagagcccccacacctggTTG a score=67.0 s hg17.chr17_random 838867 1 + 2618010 C s panTro1.chr19_random 35308683 1 - 57627672 C s mm5.chr11 24710566 1 - 121648857 T s rn3.chr10 24721189 1 - 110733352 T a score=16887.0 s hg17.chr17_random 838868 60 + 2618010 CTTTTTACTTTTGATTTCACCTAGACATTCCTTGTCAAAATG--GTTATTGGTTACTC----------TGAG s panTro1.chr19_random 35308684 60 - 57627672 CTTTTTACTTTTGATTTCACCTAGACATTCCTTGTCAAAATG--GTTATTGGTGGCTC----------TGAG s mm5.chr11 24710567 58 - 121648857 CTTTTTACTTTTGTGTTTACCTTGCCATTCCTTGGCAGAATA-TTTTATTGGTTAATT-------------G s rn3.chr10 24721190 56 - 110733352 CTTTTTACTTTTGTGTTTACCTTGCCATTCCTTGCTAT------TTTATTGGTTAGTT----------GTAG s canFam1.chr9 16543185 51 + 53642819 CTTTATATTTTTGA---------------------CAAAATGATTTTTTTGGTTAGTCTCCACTACTCTGAG a score=2447.0 s hg17.chr17_random 838928 8 + 2618010 ACTTCttt s panTro1.chr19_random 35308744 8 - 57627672 ACTTCTTT s mm5.chr11 24710625 8 - 121648857 ATTTCATT s canFam1.chr9 16543236 8 + 53642819 ACTTTCTC a score=821.0 s hg17.chr17_random 838936 18 + 2618010 aataaaaaataatttaag s panTro1.chr19_random 35308752 18 - 57627672 AATATAAAATAATTTACA s mm5.chr11 24710633 18 - 121648857 GAAAAATCTCATTTGACA a score=1260.0 s hg17.chr17_random 838954 14 + 2618010 gccgggcgcagtgg s panTro1.chr19_random 35308770 14 - 57627672 GCCGGGCGCGGTGG a score=13155.0 s hg17.chr17_random 839118 144 + 2618010 cagctactcgggaggttgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccaccgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaataaaaaaataaataaaa s panTro1.chr19 20291957 144 - 82489036 cagctactcgggaggttgaggcaggagaatggcgtgaacccgggaggctgagcttgcagtgagccgagatcgcgccaccgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaataaaataaataaaa a score=29770.0 s hg17.chr17_random 839262 108 + 2618010 taaaataatttaCACATTTGATCTTTTAACTTACATTTTATATTTTGATTTCCTCTCTCCTTTACATTATACTGAAAAGAAGT-------TTCATTTTAAGGCCTCATAACATTT s panTro1.chr19 20292101 103 - 82489036 TAA-----TTTACACATTTGATCTTTTAACTTACATTTTATATTTTGATTTCCTCTCTCCTTTACATTATACTGAAAAGAAGT-------TTCATTTTAAGGCCTCATAACATTT s mm5.chr11 24710651 102 - 121648857 TAGATAAAATTAC-CAGTATTTTTCTTAGTTTCTATTTTTTATTCT---------TCTGCTTTACATTATGTTGAAATGAAGCATACAGGTTTCTTTTAAGGTC---TAGCATTT s rn3.chr10 24721262 102 - 110733352 TAGATTAAATTAC-CAATATTTTTCTTAGTTTCTATTTTTTATACT---------TCTGTTTTACATTATGTTGAAATGAGGCATACAAATTTATTTTAAGGTC---TAGCATTT s canFam1.chr9 16543408 102 + 53642819 TCAAATAAGTTAGAAACTTGACCTTTTAGTTCACATTTTGTATTTG----CTCTTTCCCCTGTCTTTTACACTGAAAGGAAGCATATAAGTAACT-----GGAC----AATATTT a score=95736.0 s hg17.chr17_random 839370 229 + 2618010 ATGATTTTTTCTTAAACTATTTTGTCTATAGAAAGTC---AAAGTAGTAGCAGTTGAACATACTGTTCCGAAGAAGTACTTAAGTTCAATTGATTGTAA-----ATTAGATCAAACTGC--------------TGGAAGAACAGATTCTTCAAATGGAC-TTGAATGAGTGCCA-CTTTTAAAAAATTGTCTGGTAAATGAAAGAGTGATTATTTAATTTCTTTAACTGTGGAGAAAAATAGAAGTACTTTAG s panTro1.chr19 20292204 235 - 82489036 ATGATTTTTTCTTAAACTATTTTGTCTATAGAAAGTC---AAAGTAGTAGCAGTTGAACATACTGTTCCCAAGAAGTACTTCAGTTCAATTGATTGTAATGTAAATTAGATCAAACTGC--------------TGGAAGAACAGATTCTTCAAATGGAC-TTGAATGAGTGCCAGCTTTTAAAAAATTGTCTGGTAAATGAAAGAGTGATTATTTAATTTCTTTAACTGTGGAGAAAAATAGAAGTACTTTAG s mm5.chr11 24710953 235 - 121648857 ATGACTTTTTCTTAAGACATCTTA-AAATAGAAAGAT---GAGGTAATAGTGGTTGCCCATACTGTTGCTACAGTTAGCTTATGCTCACTAGTTTGTGA-----AATAGAACTGTGTGCTAC-ATTTTAACTTTAGAAAAACAAATTCTTCAGATAGAC-TTGA---AGTGTGGACTTATGAAAGATTGCTTGGTAAGTGAGAGGATGA----TCAATTTCTTCACTTCTGAGGAAAAGTGGAAATACTTGAG s rn3.chr10 24721369 235 - 110733352 ATGACTTTTTCTTAAGACATCTTA-TAGTAGAAAGAT---GAGGTAACACTGGTTGCCCAGACTATTGCTACAGTTAGCTTATGCTCAGTAGTTTATGA-----AGTCAAACTGCTTGCTAC-ATTTTAACTTGAGAAAAAC--ATTCTTCAAGTAGAC-TTGAGTGAGTGCAGCCTTTTGAAAGATTGCCTGGCAAATAAGAGGATGA----TCAATCTCTTCACTTCTGAGG-AAAGTGGAAACACTTGAG s canFam1.chr9 16543515 243 + 53642819 ATGAATTTTTCGTAAATTATCTTGTCTGTAGAAAGACCAAAAAACAGTAGCAGTTGAGCAGATTATTGCCAAGAAGTACTTATGTTTGATTGTTTGTGA---------GATCAAACTGCTGTGATTTTTAAGTTAGAGGAACAGATCCTTCATATGGACTTTGAGTGAGTGCCAACATTAAAAAAGTTGTGTGGTAA-TAAAAGAGGGATTATTTAATTTCTTTACCTGTGAAGAAAAATACAAGCACCTTAG a score=915.0 s hg17.chr17_random 839599 46 + 2618010 CCAGGTATA--------------------------------------------------TCAAAGCAACAAGGCTTTC--TTTGTT---------------------------------------GCAGGTAGAGAA s panTro1.chr19 20292439 46 - 82489036 CCAGGTATA--------------------------------------------------TCAAAGCAACAAGGCTTTC--TTTGTT---------------------------------------GCAGGTAGAGAA s mm5.chr11 24711188 137 - 121648857 ATAGTTCCATGGAGACTAGCTTTCAGTTAAAGAACATTTCAGTTAGTATTGTTTTTTGTTTAAAGAAAAAAACCCTGCCATTTATTATTTACTTATCTAGTCTAGCCCATGTACTTCGTGCTATGGCAGATAGAAAC s canFam1.chr9 16543758 41 + 53642819 -CCAGCATA--------------------------------------------------TCAAGACAA----GCTTGC--TTTGTT---------------------------------------GTAGGTAGAGAA a score=0.0 s hg17.chr17_random 839645 4 + 2618010 TGTT a score=373.0 s hg17.chr17_random 839645 4 + 2618010 TGTT s panTro1.chr19 20292485 4 - 82489036 TGTT a score=1770.0 s hg17.chr17_random 839649 16 + 2618010 TAAATTCGATGTGTGG s panTro1.chr19 20292489 16 - 82489036 TAAATTCGATGTGTGG s canFam1.chr9 16543799 14 + 53642819 TAAATTTGGTATAG-- a score=5244.0 s hg17.chr17_random 839665 13 + 2618010 TTTTAAAGTGGTA s panTro1.chr19 20292505 13 - 82489036 TTTTAAAGTGGTA s rn3.chr10 24721865 13 - 110733352 TGTTAATGTGGTA s canFam1.chr9 16543813 13 + 53642819 TTTTAAAATGGTG a score=15695.0 s hg17.chr17_random 839678 42 + 2618010 -----TGTAGATAGGTAGATCTAGTAATATAAATGTGTA-CCTTCCAG s panTro1.chr19 20292518 42 - 82489036 -----TGTAGATAGGTAGATCTAGTAATATAAATGTGTA-CCTTCCAG s mm5.chr11 24711556 42 - 121648857 -----TATAGATAGGCAAATCTAGTAAAATACACATGCA-CCCTTCAG s rn3.chr10 24721883 40 - 110733352 -----TATAGATAGG-GAATCTAGTAAATTAAACATGCG-CCTTCAG- s canFam1.chr9 16543826 45 + 53642819 CGCAGTATGGATAGGAAGA--TAGTAA-ATACATGTGCGTCCCTCCAT a score=2317.0 s hg17.chr17_random 839720 6 + 2618010 CTGGCA s panTro1.chr19 20292560 6 - 82489036 CTGGCA s rn3.chr10 24721923 6 - 110733352 TAGGCA s canFam1.chr9 16543871 6 + 53642819 TTGGCA a score=13182.0 s hg17.chr17_random 839726 62 + 2618010 TGGTTTCAGCTCAAGTTTGTTTTTTATCTTCCTGTACTAAAAATGTCGGGATAGAATTCAGG s panTro1.chr19 20292566 62 - 82489036 TGGTTTCAGCTCAAGTTTGTTTTTTATCTTCCTATACTAAAAATGTCGGGATAGAATTCAGG s canFam1.chr9 16543877 60 + 53642819 TGGTTTCAGCTCAGGTTTG-TTTTTATCTTCCTCTGCT-AAAATGCCAGGAAAGAATTCAGA a score=27791.0 s hg17.chr17_random 839788 292 + 2618010 TGACTGAAAAGttctttttttttttttttgagatggagtctagctctgtcgcccaacgatctcagcttgctgcaacctccacctctggggttcaagcaattcttctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccacacccggctaatttttgtatttttagtagagatggggtttcaccatgtttgttaggctggtcttgaactcctggcctcgtgatccacccgcctcagcctcccaaagtgttgggattacaggcgtgagccaccgcgcccgacc s panTro1.chr19 20292628 292 - 82489036 TGACTGAAAAGttctttttttttttttttgagatggagtctagctctgtcgcccaacgatctcagcttgctgcaacctccacctctggggttcaagcaattcttctgcctcagcctcctgagtagctgggattacaggcgtgtgccaccacacccggctaatttttgtatttttagtagagatggggtttcaccatgtttgttaggctggtcttgaactcctggcctcgtgatccacccgcctcagcctcccaaagtgttgggattacaggcgtgagccaccgcgcccaacc a score=870.0 s hg17.chr17_random 840080 7 + 2618010 TGACTGA s panTro1.chr19 20292920 7 - 82489036 TGACTGA s canFam1.chr9 16543937 7 + 53642819 GAACTCA a score=26558.0 s hg17.chr17_random 840087 119 + 2618010 AAAGTTTTGAATATGTGTAACCGAATGTTGCTAAGCTCATAATGATCTGTATCTCACGGAAGC--CCAGTTAGTGTTCTTACTAAGAGAGTCAGGAGAGAAATGAAAACTTAATGGA--AAAG s panTro1.chr19 20292927 119 - 82489036 AAAGTTTTGAATATGTGTAACCGAATGTTGCTAAGCTCATAATGATCTGTATCTCACGGAAGC--CCAGTTAGTGTTCTTGCTAAGAGAGTCAGGAGAGAAATGAAAACTTAATGGA--AAAG s mm5.chr11 24712391 112 - 121648857 AAGGTTTGCTGTGTGTGCAGCTGAGTGGTGCTAAGCTGGCAGTGACCTGCATT-----GGAGCAACCTGAGAGTGCTCTCACCTTGCAAG-CAGCAGGGCAGTTCCTGCTCAAGG-----AGT s canFam1.chr9 16543944 121 + 53642819 AATGCTTTGAGTGTGCATAACTGAATGGTGCCAAGCCCATAATAGTCTGAATATCAAGGAAGC--AGTGTTTGTGTTCTCACTAAGAGGGTCAGAAGAGAAATGAAAGCTTATAGAAGTGAAG a score=23407.0 s hg17.chr17_random 840206 55 + 2618010 AAGATTTGAAGAGAGATTCTGATAAAACATTA-AATTATTTTAGATACATAATATA s panTro1.chr19 20293046 55 - 82489036 AAGATTTGAAGAGAGATTCTGATAAAACATTA-AATTATTTTAGATACATAATATA s mm5.chr11 24712503 54 - 121648857 AGGATCTG--TAGAGACTCTGATAAAACATTGCCGCTTTTTTAGATACTTAAAATC s rn3.chr10 24722279 54 - 110733352 AGGATCAATAGAGAGACTCTGATAAAACATTGCCAT--TTTTACAGACTTAAAATC s canFam1.chr9 16544065 53 + 53642819 GGGATTTA--GAGAGATTCATATAAAACATTACTGTT-TTTTAGGTACATAAAATA a score=1928.0 s hg17.chr17_random 840261 5 + 2618010 TATTC s panTro1.chr19 20293101 5 - 82489036 TATTC s mm5.chr11 24712557 5 - 121648857 TTTTC s rn3.chr10 24722333 5 - 110733352 TTTTC a score=221.0 s hg17.chr17_random 840266 4 + 2618010 AGTg s panTro1.chr19 20293106 4 - 82489036 AATg s rn3.chr10 24722338 4 - 110733352 CACG a score=26401.0 s hg17.chr17_random 840270 283 + 2618010 ctgggtgcagtggctcacgcctgtaatcccagtactttgggaggctgtggtgggtggatcatgacgtcagaagttcaagaccagcctggcgaagatggtgaaaccccatctctacttaaaataaaaaaattagctgggtgtggtggcgggtgcctgtaatcccagctactcaggaggctgaggcagagaattgcttgaacccaggaggcagaggttgcagtgagccaggatcgtgccactgcacgccagcctgggtgacagagactctgtctcaaaaaaaaaa s panTro1.chr19 20293110 283 - 82489036 ctgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgtggcgggtggatcatgacgtcagaagttcaagaccagcctggcgaagatggtgaaaccccatctctactaaaaataaaaaaattagctgggtgtggtggcgggtgcctgtaatcccagctactcaggaggctgaggcagagaattgcttgaacccgggaggcagaggttgcagtgagccaggatcgtgccactgcacgccagcctgggtgacagagactctgtctcaaaaaaaaaa a score=-126.0 s hg17.chr17_random 840553 2 + 2618010 TA s panTro1.chr19 20293393 2 - 82489036 TA s mm5.chr11 24712721 2 - 121648857 AG a score=546.0 s hg17.chr17_random 840555 1 + 2618010 T s panTro1.chr19 20293395 1 - 82489036 T s mm5.chr11 24712723 1 - 121648857 T s rn3.chr10 24722495 1 - 110733352 T a score=58324.0 s hg17.chr17_random 840556 127 + 2618010 TTTCCTTCAGAACTAGCTAAGGTACATTTCTCAACACTTTTCTACCACAGCAACAGGAAAAAACCTGAAGTCATGTGTAAGCCCATGTA--ATTTTAGAGTTTAAG----AGAATGGGAAGTTGTAT-------GAGTTG s panTro1.chr19 20293396 127 - 82489036 TTTCCTTCAGAACTAGCTAAGGTACATTTCTCAACACTTTTCTACCACAGCAACAGGAAAAAACCTGAAGTCATGTGTAAGCCCATGTA--ATTTTAGAGTTTAAG----AGAATGGGAAGTTGTAT-------GAGTTG s mm5.chr11 24712724 129 - 121648857 TTTCCTTCAGAACTAGCTAAACCACATTTCTCAGTCCCTTTCTCCTGTAGCGGCAAG-AGAAACCCAGAGTCATGC-CGAGCTCGTTTG--ATATTAGAATGTAATTCACAAAATGGTAATTTTACT-------GATTTG s rn3.chr10 24722496 130 - 110733352 TTTCCTCTAGAAGTAGCTAAGGCACATTTCTCAATCCTTTTCTCCTGTGGTACCAAG-AGAAACCC--AGTCATGGGGGAGCTCATCTGGTATATTAGGACGGAAGTCACAAAAGGGTAATTTTATT-------GATTTG s canFam1.chr9 16544118 132 + 53642819 TTTTCTTCAAAACTAGCTAAGGTATATTTTTCAACTCATTTCTCCTGTAGCAACGGG-AAAAACCTAGATTCATGTGTAAGCTCATCTA--ATTTTAGAATATAAG----AGAATGGGAAATTATATTAATGTGGAATT- a score=2359.0 s hg17.chr17_random 840683 12 + 2618010 TTAAAGTTTGAA s panTro1.chr19 20293523 12 - 82489036 TTAAAGTTTGAA s rn3.chr10 24722626 9 - 110733352 CTA---TTTTAA s canFam1.chr9 16544250 12 + 53642819 TTAAGGTTTCAG a score=1327.0 s hg17.chr17_random 840695 9 + 2618010 TTGGGGGCa s panTro1.chr19 20293535 9 - 82489036 TTGGGGGCa s canFam1.chr9 16544262 9 + 53642819 TCAGAAACA a score=27597.0 s hg17.chr17_random 840704 298 + 2618010 gccaggtgtggtggctcacacctataatcctagcattttgggagggctaggtgggcggatcacctgtggtcaggagtttgagaacagcctggccaacatggtgaaacaccgtctctactaaaaacacaaaaattagctgggcgtggtggcaggcacctgtaattccagctacttgggatgctgaaggcaggagaatcgcctgaacccgggaggtggaagttgcagtgagcggagattgtgccactgcacgccagcctgggcgacagagcaagactctgtctcaaaaaaaaaaaaaaaT s panTro1.chr19 20293544 298 - 82489036 gccaggtgtggtggctcacacctataatcccagcattttgggagggctaggtgggcggatcacctgtggtcaggagtttgagaacagcctggccaacatggtgaaacaccgtctctactaaaaacacaaaaattagctgggcgtggtggcaggcacctgtaattccagctacttgggaggctgaaggcaggagaatcgcctgaacccgggaggcggaagttgcagtgagcggaaattgtgccactgcacaccagcctgggcgacagagcaagactctgtctcaaaaaaaaaaaaaaaa a score=10914.0 s hg17.chr17_random 841002 33 + 2618010 AGTTTGGATTGGGAACAGGGATAGatttgggct s panTro1.chr19 20293842 33 - 82489036 aGTTTGGATTGGGAACAGGGATAGATTTGGCCT s mm5.chr11 24713028 32 - 121648857 AGTTTGCATAAGGAACAGTGATAGATTTAGCC- s rn3.chr10 24722635 33 - 110733352 GGTTTGCATAAGGTACAGTGATGGATGTAGCCT a score=650.0 s hg17.chr17_random 841035 14 + 2618010 tccacatgtatgta s panTro1.chr19 20293875 13 - 82489036 TCCACATGTATGT- s mm5.chr11 24713060 10 - 121648857 TCTGTATATA---- a score=825.0 s hg17.chr17_random 841049 62 + 2618010 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatATATATATATGTAATAAAAA--AGA s panTro1.chr19 20293888 31 - 82489036 -------------------------GTGTGtatatatatatata--------ataaaaaGAAGA a score=8063.0 s hg17.chr17_random 841111 46 + 2618010 TAAAAGTAAAATC----AGAAAATTACTTTTAAGGCATGAAATTGTTGCt s panTro1.chr19 20293919 46 - 82489036 TAAAAGTAAAATC----AGAAAATTACTTTTAAGGCATGAAATTGTTGCt s mm5.chr11 24713489 49 - 121648857 TGAAAGTAAAACCAACTAGAAAAGTA-TTTGAAACCATGAAGTTGTTGCA a score=28061.0 s hg17.chr17_random 841157 320 + 2618010 tcttttaatttttttttttttt-ctttttgagatggagtcttcactctgtcgcccaggctggagtgcagtggcgcagtctcggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctccccagcagctggggctacaggcgcacgccgccacgcccagctaatttttgtatttttagtagagacgggattttaccgtattagccaggatggtctcgatctcctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattaaaggtgtgagccaccgtgcctggccAATTGTTGCTT s panTro1.chr19 20293965 320 - 82489036 tcttttaatttttttttttttttctttttgagatggagtct-cgctctgtcgcccaggctggagtgcagtggcgcagtctcgcctcactgcaagctctgcctcccgggttcacaccattctcctgcctcgacctccccagcagctggggctaaaggcgcacgccgccacgcccagctaatttttgtatttttggtagagacggggttttaccgtattagccaggatggtctcgatctcctgaccttgtgatctgcccgcctcggcctccaaaagtgctgggattaaaggtgtgagccactgtgcctggccAATTGTTGCTT a score=1419.0 s hg17.chr17_random 841477 5 + 2618010 CTTTG s panTro1.chr19 20294285 5 - 82489036 CTTTG s canFam1.chr9 16544609 5 + 53642819 CTTTG a score=20787.0 s hg17.chr17_random 841482 64 + 2618010 TGTAAGTTTTTATTTGAAGAA-AAAGGCCATTTTTTTGTGATATGTGCAGTCATCCTAAAAGACC s panTro1.chr19 20294290 64 - 82489036 TGTAAGTTTTTATTTGAAGAA-AAAGGCCATTTTTTTGTGATATGTGCAGTCATCCTAAAAGACC s mm5.chr11 24713539 62 - 121648857 TGTAAGTTTTTAATAGGTGAAGAAAGGTCA---TCTTGTGATATGTGCATTAATCCTGAGAAACC s canFam1.chr9 16544614 63 + 53642819 TGTAAGTTTTTAATTAATGGA-AAAAG-CACCATCTTGTGATTTGTGCAGTGACCCAGAAAGACC a score=3717.0 s hg17.chr17_random 841546 17 + 2618010 TATGGGCATGTGTCTGt s panTro1.chr19 20294354 17 - 82489036 TATGGGCATGTGTCTGt s canFam1.chr9 16544677 17 + 53642819 TATTGGCATATGTCTCT a score=129927.0 s hg17.chr17_random 841563 1424 + 2618010 tttttttttttttttttttttgagatggagtcttgctgtattgcccaggctggagtacagtggtgcagtatcggctcactgcaacTAGTAGAACTTT----TTTTTTTTTTTTTAAAGAACTTGTTTTAAAATAATCCTTAATAGGCTTTTATTAACTCTGTTTGGATATTAGTTATGTACCCTTTTCTCTTTGCAAAAATGAAAAATCATTTCAAGTAGAAATTAAAGGTTTGTTTCTCATCCCTTTCTTTAGATATAGTAACAGTTATACCAGATATATATATATATATGttttttt--------gtttttttttttttgagacagagtttcactcttgttgcccaggctggagtgcaatggcatgatcttgctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggatcacaggtgtgcaccaccacgcccagctaatttttgtatttttagtagagacagggtttcaccatgttggccagcctggtctcgaactcgagacctcaggtgatccacctacctcggcctcccaaagtgctgggattacaggcatgagccaccacgcccggccCAGTTATACCAGATATAAGCAAATTTGCTAGTAGTTTAGATTTCTGGAATTGTGCCAACTACACATCAAGAGACTATTTAGCTTTGTTACAGAAGTCAGTATCAGTTTCTTGTTATAAGACGAGACCTGGTTTTACAGACTTTTCTATTTCTCAATGGAACTTTACTCTGAAGATATACTCTTCCATTTAAATACTAGTTCCAAAACCTACATTATATGGTGGCTGCTTAATAAACATTTAACATTTTGGTTAATTTAAATCTTGTTGATGTGTATACATGAATAACTGGGCTAAAAGCAGATACCTTTGATTATTGTGAAACTTCAAGTAAATATTGTGTGAAAAGGACCCCTTCTGTCTCACAAATTCTGGCCCCTCAGCTCATTGTCTGAACAGTGATTCCCTTGCATATAATAAATTCCCTTGGCttatatataataataaatgaagtttattatttatttGAACTTTTTACCCCTGTAAATACCAAGGTTCTTTTTGCCTAAGTGGTAATTTGTGTCATTCAAAGAGtttttattaaatattattattattatttgagatagagtctcactcttattgcccaggctggagtgcagtggcactatctcggctcactacagcctccgtctcctgggttgaagcgattcttgtgcctcagcctcccaagtcgctgggattacaggtgtgtgccaccaaacctggctaatttttaaatttttgtagagatggggtttccccattttggccaggctgctctcaaactgttgacgcccaccttggcctcccaaagtgctgggattacaggtgtgaaccactgcaccagaccTTA s panTro1.chr19 20294371 1434 - 82489036 ttttttttttttttttttt--gagatggagtcttgctgtattgcccaggctggagtacagtggcgcaatatcggctcactgcaacTAGTAGAACTTTCTTTTTTTTTTTTTTTTAAAGAACTTGTTTTAAAATAATCCTTAATAGGCTTTTATTAACTCTGTTTGGATATTAGTTATGTACCCTTTTCTCTTTGCAAAAATGAAAGATCATTTCAAGTAGAAATTAAAGGTTTGTTTCTCATCCCTTTCTTTAGATATAGTAACGGTTATACCAGatatatatatatatatatatatatatatatatgtatttttttttttgagacagagtttcactcttgttgcccaggctggagtgcgatggcatgatcttgctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggatcacaggtgtgcaccaccacgcccagctaatttttgtatttttagtagagacagggtttcaccatgttggccagcctggtctcgaactcgagacctcaggtgatccacctacctcggcctcccaaagtgctgggattacaggcatgagccaccacgcccggccCAGTTATACCAGATATAAGCAAATTTGCTAGTAGTTTAGATTTCTGGAATTGTGCCAACTACACATCAAGAGACTATTTAGCTTTGTTACAGAAGTCAGTATCAGTTTCTTGTTATAAGACAAGACCTGGTTTTACAGACTTTTCTATTTCTCAATGGAACTTTACTCTAAAGATATACTCTTCCATTTAAATACGAGTTCCAAAACCTACATTATATGGTGGCTGCTTAATAAACATTTAACATTTTGGTTAATTTAAATCTTGTTGATGTGTATACATGAATAACTGGGCTAAAAGCAGATACCTTTGATTATTGTGAAACTTCAAGTAAATGTTGTGTGAAAAGGACCCCTTCTGTCTCACAAATTCTGGCCCCTCAGCTCATTGTCTGAACAGTGATTCCCTTGTATATAATAAATTTCCTTGGtttatatataataataaatgaagtttattatttatttGAACTTTTTACCCCTGTAAATACCAAGGTTCTTTTTGCCTAAGTGGTAATTTGTATCATTCAAAGAGtttttattaaatattattattattatttgagatagagtctcactcttattgcccaggctggagtgcagtggcactatctcggctcactacagcctccatctcctgggttgaagcgattcttgtgcctcagcctcccaagtcgctgggattacaggtgtgtgccaccaaacctggctaatttttaaatttttgtagagatggggtttccccattttggccaggctgctctcaaactgttgacgcccaccttggcctcccaaagtgctgggattacaggtgtgaaccactgcaccagaccTTA a score=8397.0 s hg17.chr17_random 842987 60 + 2618010 AATACTCTGTTTAAGTGATAGTTTGATAAGTGTGAACGCAAGTCTGAAATAGGTTTCTTT s panTro1.chr19 20295805 60 - 82489036 AATACTCTGTTTAAGTGATAGTTTGATAAGTGTGAACGCAAGTCTGAAATAGGTTTCTTT s canFam1.chr9 16559830 55 + 53642819 AATCATATATATAAGAGATAATTTGATGTGTGTTAA---AAATTT--AACAGTACTCTTT a score=7310.0 s hg17.chr17_random 843047 79 + 2618010 GCTTGTGAGAAAGTATAACGAATTGCCAAGACAATAGTGACAAACAGAGGGCATATTTTTCAAAGAGGAAGAGTTTATA s panTro1.chr19 20295865 79 - 82489036 GCTTGTGAGAAAGTATAACAAATTGCCAAGACAATAGTGACAAACAGAGGGCATATTTTTCAAAGAGGAAGAGTTTATA a score=9749.0 s hg17.chr17_random 843126 53 + 2618010 TAGTGTTAACATTAAGACAAAAGTCTTAAGTTTCTAATTTCTGATCTTGTTTG s panTro1.chr19 20295944 53 - 82489036 TAGTGTTAACATTAAGACAAAAGTCTTAAGTTTCTAATTTCTGATCTTGTTTG s canFam1.chr9 16560091 53 + 53642819 TGATGCAATTTATAAGACTAAAATTTTAAATTTCTAATTCCTGATCTTACTGG a score=28087.0 s hg17.chr17_random 843179 313 + 2618010 TTGGGAtttcttttttttttttttttttttt-----gagacaggtctttctctgtcatccaggctggaatgcagtggcacagtcatggcttactgcagcctcctgggctcaagttactctcccaccacagcctcccggagagctgggatggcaggcatgtgccaccacacctggctaattttttaatttttgtagagatggggttttgcaatgttccccaggctggtctcagactccaagactcaagcagtcctcctacctcagcttcccaaagtgctgggattacagatatgagccactgtgcctggccCTTGTTTG s panTro1.chr19 20295997 317 - 82489036 TTGGGAAttctcttttttttttttttttcttctatggagacaggtctttctctgtcatccaggctggaatgcagtggcgcagtcatggcttactgcagcctcctgggctcaagttactctcccgccacagcctcccggagagctgggatggcaggcatgtgccaccacacctggctaattttttaatttttgtagagatggggttttgcaatgttccccaggctggtctcagactccaagactcaagcagtcctcctac-tcagcttcccaaagtgctgggattacagatatgagccactgtgcctggccCTTGTTTG a score=7597.0 s hg17.chr17_random 843492 43 + 2618010 GATTTCTATGCTTATCTGTGAAGTATATTCTGGTTTCTATGCA s panTro1.chr19 20296314 43 - 82489036 GATTTCTATGCTTATCTGTGAAGTATATTCTGGTTTCTATGCA s canFam1.chr9 16560144 42 + 53642819 GATTTCTAAGTTTGTTTATGAAAC-TCTGCTGCTTTCCATGCA a score=51796.0 s hg17.chr17_random 843535 290 + 2618010 GGATAGATCCATTCTCAAATAAACAACCCTTAAGTATCATTAGTTCAAACTGGAGCCA-----AATAAATGTCAGCATTAGAAGGAGCAAGTGATAGTTAGCCAGCCCCTTTATTCCTTTTTAGTGCAAATCAGAGATAAAG----AACATGAAGTTTGCAGT-----GTATTTGCATTCTTTCATTTTTACATTTGTTGGTTTTGAATAATATTGAGGGGCTGTCTGATAAAGAACCTGTGTAGGTTTCCATATGGCTAT-----ATACAAAGTATATGAGCGTAGAATAGTTTTAAATTTTGTCTTA s panTro1.chr19 20296357 290 - 82489036 GGATAGACCCATTCTCAAATAAACAACCCTTAAGTATCATTAGTTCAAACTGGAGCCA-----AATAAATGTCAGCATTAGAAGGAGCAAGTGATAGTTAGCCAGCCCCTTTATTCCTTTTTAGTGCAAATCAGAGATAAAG----AACATGAAGTTTGCAGT-----GTATTTGCATTCTTTCATTTTTACATTTGTTGGTTTTGAATAATATTGAGGGGCTGTCTGATAAAGAACCTGTGTAGGTTTCCATATGGCTAC-----ATACAAAGTATATGAGTGTAGAATAGTTTTAAATTTTGTCTTA s canFam1.chr9 16560416 301 + 53642819 GGATGTATGCATTTTAAATTAAGAAATATATAAATATGATTAGCTCAAACTGGCATCAGATTGAATATATCCTTGCATTAGAAGGAACAAATGATACT--GTTAGCCCTTTTATTCCTTTTTAGTACAAGTCAGAGATAAAAAAATAACATGAAGTTTGCAGTTGTACATGCTTGCATTCTTTTACTTTCACTTTAATTGATTTTGAATGATAACAATAGAT--TCTGATAAGGAAGT----TAAACTTCCATAAGGTTATATAAAATATAAAGTATATGAGTGTATAATGGTTTTAAGAATTATCTTA a score=191.0 s hg17.chr17_random 843825 2 + 2618010 GT s panTro1.chr19 20296647 2 - 82489036 GT a score=75724.0 s hg17.chr17_random 843827 476 + 2618010 TATACTTGGTAAGTTTTAAAACGTTATTTAAATAGCCTTAAGGTGATATGGATTGCTTTAGTGACTGCTGTTTTAGGAATTTAGTTGGCTTATTG-CTGACTATAGAGGGAACGTTTTATCTTC-----------TTTTTAACCTCCAGTTCAGGTTAGGTGCCTAACCAAGTGAAACATTTTTCATAAT----ATAATGTTTAATAGTGATAATTATAAAAATAATGATGAGTTTAGTGTTTACTCTATACCAGGCACTAAGTGCATTACC---TGTTCATATAgagaacaaccgtaggcacagagagggta------tctactttaggtaataaaactgataaatgttagagccaggattcaaacccaggcggtttgga-tctagggtccatgtacttgccac-----tCTATTGcttgtcattaatgtaaccacaccatattgcaattatttgtttgtgtcatgtctgtactacttttcaatggaatcttaagatccttgaggg s panTro1.chr19 20296649 475 - 82489036 TATATTTGGTAAGTTTTAAAACGTTATTTAAATAGCCTTAAGGTGATATGGATTGCTTTAGTGACTGCTGTTTTAGGAATTTAGTTGGCTTATTG-CTGACTATAGAGGGAACGTTTTATCTTC-----------TTTTTAACCTCCAGTTCAGGTTAGGTGCCTAACCAAGTGAAACATTTTTCATAAT----ATAATGTTTAATAGTGATAATTATAAAAATAATGATGAGTTTAGTGTTTACTCTATACCAGGCACTAAGTGCATTACA---TGttcacatagagaacaaccgtaggcacagagagggta------tctactttaggtaataaaactgataaatgttagagccaggattcaaacccaggcggtttgga-tctagggtccatgtactttccac-----tCTATTGCCTGTCATTAATGTAACCACACCATATTGCAATTATTTGTTTGTGTCATGTCTGTACTAC-TTTCAATGGAATCTTAAGATCCTTGAGGG s canFam1.chr9 16560915 462 + 53642819 TGTACTTAGTAAGTTTTTAAACA----CTAAATAGCTTTAAGATGATATGGATTGCTTTATTGATTGT--TTTTACGAATTTAGATGACTTATTATTTGATTATAGAAGATATA-TTGGTCTTCCAAAGTTAGGTTCCCTAACCTTCAGAT-GTGTTAGGGTCTCAATCCTGTGTATCATTTTTCATAATAATGATAATGTTTCATA---ATAAAGATAAAAATAATGAAGAATTCATTG-----------ctaggaactaagtgcattacatattgcttgtatagacgacaaccttaggtacagagaggttatgtaactttactataagtcataggagtggtaact-----------catgcaaatccaggtagtttggcttctaaggtccacttgctaatcaccatAGCCTATTGCTTGTTATTGATTTTACcacaccatattgtaattatttgtttg-----tgtctacactta-ttacaat------ctaagttccctaagga a score=2049.0 s hg17.chr17_random 844303 27 + 2618010 gccgggcat-ggtagctcatggctgtaa s panTro1.chr19 20297124 28 - 82489036 GCCGGGCACGGGTAGCTCATGGCTGTAA a score=391.0 s hg17.chr17_random 844330 4 + 2618010 tccc s panTro1.chr19_random 35314171 4 - 57627672 TCCC a score=5588.0 s hg17.chr17_random 844608 140 + 2618010 ccagtaattatgattcattctttttcatttgtggttttccctggtatctgacatatagtagggatttaataaatatacattgaatgaaACGAAG--AAAATCTAGATAAATGGAGTAAGTCTGTCATAcagtagttcctcct s canFam1.chr9 16561377 127 + 53642819 cgaagagccatgattcattctttttcacctgtggtctttggtggtatctgatgtagagtaggtgttcagtaaatatttatttagtaaaATAAAGTAAAAATCTAAAGAGATGGGGT---------------TAGTCTCTCCT a score=30131.0 s hg17.chr17_random 845521 369 + 2618010 gattacaggcatgagacaccgcgcccag--ccaatatcttctttttaaaaaaaattatttca--tttatttatttttagaggcagagtctctgttgcccaggttggagtgcagtggtgccatcatatctcactgcagcctcaaactgctgggctcaagtgatcctcctgcttcagcctcccagttagctaggactataggtatgcaccaacacacccagcaaatttgtaaaaattttttgtgagtcaggtctggctttattgctgaagttggtcttgaactcctggcttcaagcgatcctcctgcctcagcctcccaaagtgccaggattacaggcatgagccactgtgcccagcctctcttatagtatctta s panTro1.chr19_random 35315285 365 - 57627672 GATTACAGGCATGAGCCAC-GCGCC-AGGGTCAATATCTTCTTCT--AAAACAATTATT-CACttttatttatttt-agaggcagagtctctgttgcccaggttggagtgcagtggtgccatcatatctcactgcagcctcaaactgctgggctcaagtgatcctcctgcttcagcctcccagttagctaggactataggtatgcaccaacac--ccagcaaatttgtaaaaattttttgtgagtcaggtctggctttattgctgaagttggtcttgaactcctggcttcaagcgatcctcctgcctcagcctcccaaagtgccaggattacaggcatgagccactgtgcccagcctctcttatagtatctta a score=35785.0 s hg17.chr17_random 845890 387 + 2618010 ttgtattatactcactcttcttctttgacatttccaaactgctagcatcactactcttgtgctttgaggccattattaagtacaataaaggttacttaaacacaagccttgtgatacattgacagtcaatctgataactgagatggctactatgtgactaatgggctgggtggcatatatatacagcatggataggtcggagaaagggatgattcatgttctgggcagaatggaatgggagggcacaagatttcatcacactattcagaacagtacagtttaaaacttatgaattgtttgtttctggaattttccatttaatattttcagactgtagttgactctaggcaattgaaactgtggaaagtgaaactgcagataaggggg s panTro1.chr19 20298815 387 - 82489036 TTGTATTATACTCACTcttcttctttgacatttccaaactgctagcatcactactcttgtgctttgaggccattattaagtacattataggttacttaaacacaagccttgtgatacattgacagtcaatctgataactgagatggctactaggtgactaatgggctgggtggcatatatatacagcatggataggtcggagaaagggatgattcatgttctgggcagaatggaatgggagggcacaagatttcatcacactattcagaacagtacagtttaaaacttatgaattgtttgtttctggaattttccatttaatattttcagactgtagttgactctaggcagttgaaactgtggaaagtgaaactgcagataaggggg a score=51508.0 s hg17.chr17_random 846277 275 + 2618010 ACTTGTCAGGTCTGCATTTCTTCATGTGCTCTATCCTAGTAAC-TTTATGGGT----AACAAAATTATTTCGTATTTGAGATTATTTTGTTACCAGCTTTAACTTGTATTTTACTTCCCTTTGAGGACTACCATCAAGATACTTACTAATTGTAAAGATTCTTTACAGTATTTTAAATATTAAGAAAATGGAGAGCATAAAAAACTGCTGTAAATTATGTAGTTTTTGCATTAAATGTAGAGAAAACACTGATTGCATAATGTTAGTAACATTGTAGTGT s panTro1.chr19 20299202 275 - 82489036 ACTTGTCAGGTCTGCATTTCTTCCTGTGCTCTATCCTATTAAC-TTTATGGGT----AACAAAATTATTTCGTATTTGAGATTATTTTGTTACCAGCTTTAACTTGTATTTTACTTCCCTTTGAGGACTACCATCAAGATACTTACTAATTGTAAAGATTCTTTACGGTATTTTAAATATTAAGAAAATGGAGAGCATAAAAAACTGCTGTAAATTATGTAGTTTTTGCATTAAATGTAGAGAAAACACTGATTGCATAATGTTAGTAACATTGTAGTGT s canFam1.chr9 16561504 268 + 53642819 ATTTGTAAAGCCTGAATTTC-TCATATGCTC-ATCCTGTTGACTTTTATGGATAACAAACAAAATTGTATTATG-TTGGGATTATTTTGTCATTAACTTTAATTTGTATTTTA-TTCCCTGTGAGGGATATAATCAAGATATTTACTAATTGTAAAGATTCTGTGCAGTGTTTTAAGCATTAAGAAAATGAAGAGCATAAAAA----TTACAAATTACGTAATTTTTAGATTAAATGGAAAAGAAAAACAGATTCCATGAT----ATAATATTGTATTGT a score=27892.0 s hg17.chr17_random 846552 307 + 2618010 ATGCTGttctttttttttttttttt-------------gagatggagtttcgctcttattgcccaggctggagtgcaatggcatgatttcggctcgccgtaacctcagcctcccggattcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcatgcaccaccacagccggctaattttgtatttttagtagagatggagtttatccatgttggtcaggctggtctcgaacctccgaccacaggtgatccgcctgcctcagcctcccgcagtgctgggattacaggcacaagccgccgcgcccggcc s panTro1.chr19 20299477 320 - 82489036 ATGCTCTTCtttttttttttttttttttttttttttttgagatggagtttcgctcttatcgcccaggctggagtgcaatggcatgatttcggctcgccgtaacctcagcctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcatgcaccaccacagctggctaattttgtatttttagtagagatggagtttatccatgttggtcaggctggtctcgaacctccgaccacaggtgatccgcctgcctcagcctcccgcagtgctgggattacaggcacaagccgccgcgcccggcc a score=52668.0 s hg17.chr17_random 846859 293 + 2618010 ATGTATGCTGTTCTTAAGTGTGAAGCTGGAAGAGTTAGTTGTTCTCCAAATCAATGCTTCCTTACTTT-TTTTCAAGGCATTAGTAGAAACTGATGTTTTCCTGGTACATAAGGAAGAGGAGGCTCACAACTGGAGGGTATCAGAGATCTTTCATTGCTCTAGGCCTACCAGGCTGGTCCAAGGGCCAAGGGAATTATTATCTTGATAAACCTGTAATACATGTTTGGATCTGCCACAG----TTAGGGAAGCTCTGCT----ATAGTTTCAAGTTAATAGAATTAGAAGGGAAGTTAGGTA s panTro1.chr19 20299797 293 - 82489036 ACGTATGCTGTTCTTAAGTGTGAAGCTGGAAGAGTTAGTTGTTCTCCAAATCAATGCTTCCTTCCTTT-TTTTCAAGGCATTAGTAGAAACTGATGTTTTCCTGGTACATAAGGAAGAGGAGGCTCACAACTGGAGGGTATCAGAGATCTTTCATTGCTCTAGGCCTACCAGGCTGGTCCAAGGGCCAAGGGAATTATTATCTTGATAAACCTGTAATCCATGTTTGGATCTGCCACAG----TTAGGGAAGCTCTGCT----ATAGTTTCAAGTTAATAGAATTAGAAGGGAAGTTAGGTA s canFam1.chr9 16562603 296 + 53642819 aTATATGCTCTTCTTAAATGCAAAGTTGGTAGAGTTA----TTCTCCAAATCAGTACTTCTTAACTTTCTTCCCAAGACATTCATAGAAAATTATGTTTTCTTGGTACATTGGAAAGAAGAGCCTCACAG-GGGAAGGTGACAGAAGTATCTCATTGTTCAAGTGCTATCTTGCTGACCCAAAGGCCAAGGAAA-CAGTATCTTGGCAGACCTGTAATTCATGTTTGGAGATGCCAGAGAACACTGGGAAAATTCTGCTGTAAATAGTTTTGACATATTAGCGTTACAAAGGATTTTAGCTA a score=86656.0 s hg17.chr17_random 847152 965 + 2618010 GTAGTCAGGGCTCATTTTATTTATTTGTGCCTTCTGttttacttttttttttttttttgaaatggagtcttgtgctggcgtgacctcggctcactacaacctctgcctcccgggttcaagcagttctcttgcctctgcctcccaagtagctgggactacagacgcaggccaccacgcccggctaatttttgtatttttagtagagatggggtttcccatgttggccaggctggtctcgaactcctgaccttgtgatccacctgccgtggtctcccaaagtgctgggattacaggcatgagccaccgcacccagccTGTTTTACTTTTTTCTTGATCCCAGATCTTTTTCAGTTTTCTTGCTTTTTTTCTCAAAGAACTAACCATTGCTTTGTAGACCTCAGTTAACTATTATTTCCTTATTAACTTCTGCTTCCTTTGGGTTTACTTTGCAAGGttttttttttttatttttgagacggagtcttactctgtcacgcaggctggagtgcagtggcgtgatcttggctcactgcaatccctgccttctggtttcaagtgattcttatgcctcagcctcctgatagctaggattaaaggcatgtgccaccacacccagctaatttttgtatttttagtagaggcggagttttaccatgttggtcaggctggtctcaaactcctgacctcaagtgatcggttcgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcTACCGTGCCCGGTCTACTTTGCAGATTTAAAAAAACTTCTTTAggctggtcccagtgcagtggtgtttataactcatcaatcatagccagttacagatttctttattcctccttcactcccactgcttcacttgactgcccttAAAAAAAAACAAAAAACAAACAGAAGTCTTGAGATGGATGTTTGGCTTATTACTTTTCAGTCCTTCTTTCtattata s panTro1.chr19 20300090 948 - 82489036 GTAGTCAGGGCTCATTTTATTTATTTGTGCCTTCTGttttac--ttttttttttttttgaaatggagtcttgtgctggcgtgacctcggctcactacaacctctgcctcccgggttcaagcaattctcttgcctctgcctcccaagtagctgggactacagacgcaggccaccacgcccagctaatttttgtatttttagtagagatggggtttcccacgttggccaggctggtctcgaactcctgaccttgtgatccacctgccgtggtctcccaaagtgctgggattacaggcatgagccaccgcacccagccTGTTTTACTTTTTTCTTGATCCCAGATCTTTTTCAGTTTTCTTGCTTTTTTTCTCAAAGAACTAACCATT------------TCAGTTAACTATTATTTCCTTATTAACTTCTGCTTCCTTTGGGTTTACTTTGCAAGG--ttttttttttatttttgagacggagtctcactctgtcacgcaggctggagtgcagtggcgtgatcttggctcactgcaatccctgccttctggtttcaagtgattcttatgcctcagcctcctgatagctaggattaaaggcatgtgccaccacacccagctaatttttgtatttttagtagaggcggagttttaccatgttagtcaggctggtctcaaactcctgacctcaagtgatcggttcgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcTACCGTGCCCGGTCTACTTTGCAGATTTAAAAAAACTTCTTTAggctggtcccagtgcagtggtgtttataactcatcaatcatag-cagttacagatttctttattccttcttccctcccactgcttcacttgactacccttAAAAAAAAACAAAAAACAAACAGAAGtcttgagatggatgtttggcttattacttttcagtccttctttctagtata a score=3877.0 s hg17.chr17_random 848117 20 + 2618010 ttcatttaaa--tataaatttt s panTro1.chr19 20301038 20 - 82489036 ttcatttaaa--tataaatttt s canFam1.chr9 16565402 22 + 53642819 TTTATTTAAAACTATAAAATTT a score=58314.0 s hg17.chr17_random 848137 370 + 2618010 aatC--CTAAAAATGTACTGCTTTTAGCTGCAGCCCACACTTTTTTTGGTTTGTTTGTTTTGGGGGAAATTCTCCAGGCAGTAGTTATGGCTGTTGTTG---------CTTGCTGCTGCTTCTTTCCTATTTTTGTT-------GATAGCTTTGTGAGAGTACCTGTAATG-ttgacatactataaagggtacatcttaaaatatgtaatttgataagtttt--ctcatgaatgtaacc-aggtaatgagcatattcatca-ccctagaacatttcctcatgcccctttataatccttttctccccttttccttgctccttccccaggcaatta-tgatttgattccGTGTTA----ttttttttttgtacagagtctctgtcacccaggctggggta s panTro1.chr19 20301058 374 - 82489036 aatc--ctaaaaatgtactgcttttagctgcagcccacactttttttggtttgtttgttttGGGGGAAATTCTCCAGGCAGTAGTTATGGCTGTTGTTG---------CTTGCTGCTGCTTCTTTCCTATTTTTGTT-------GATAGCTTTGTGAGAGTACCTGTAATG-ttgacatactataaagggtacatcttaaaatatgtaatttgataagtttt--ctcatgaatgtaacc-aggtaatgagcatattcatca-ccctagaacatttcctcatgcccctttataatccttttctccccttttccttgctccttccccaggcaatta-tgatttgattctgtGTTGttttttttttttttgtacagagtctctgtcacccaggctggggta s canFam1.chr9 16565619 379 + 53642819 AATCTGCAGAAAACAAATCACTTTTAGCTACAGCTCACACTTTTTCTGGCTTGTTTA----GGGGAAAATTATATAGGCAGCAGCTGTGACTGCTGCTACTACAGCCCCTTGCCGCCTCATCTTTTTTTCTTTCCTTTCATTAATACAGTTTTATGAGATT-TATGTAATATTTGACATGttatata---tatatattaaaatgtataatttGGTACTTTTTGACCTATGAATacaaccaaggtaatgaacatatccatcacccccacaatgtttcctcatgcccctttgggatctagtcttccccttctcc---ccccatctccaggcaactgctgatctgctGCCAC--------ATTTTTTGATATATAATATCTTTATTAATCAGTCTAAAATA a score=39273.0 s hg17.chr17_random 848507 455 + 2618010 cagtggctctatctcaacttactgctacctccacctcccggcttaaagcaattcttgtgcctcagcctcccgagtagctgggacttcaggtgtacgccaccacacctggctcatttttgtgggtttttaTTTGTATTAATTAATTAAtttttatttatttattta----gagatggagtctcgctctgctgcccaggctggggtgtagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagcagttctcctgcctcagcctcccaaatagctgggattacaggcttgtgccaccattcctggctaattttttctatttttagtagagatggggtttcaccatgttggc-caggctggtcttgagctcctgacctcaagtgatccacatgcctcagcctccaaa-gtgctgggattacaggcatgagccaccacacctggccCACCCCCC s panTro1.chr19 20301432 460 - 82489036 cagtggctctatctcaagttactgctacctccacctcccagcttaaagcaattcttgtgcctcagcctcccgagtagctgggacttcaggtgtacgccaccacacctggctcatttttgtgggtttttaTTTGTATTAATTAATTAAtttttatttatttatttattataagatggagtctcgctctgctgcccaggctggggtgtagtggtgtgatctcggctcactgcaacctctgcctcccaggttcaagcagttctcctgcctcagcctcccaaatagctgggattacaggcttgtgccaccattcctggctaattttttctatttttaacagagatggggtttcaccatgttggcaca-gctggtcttgacctcctgacctcaagtgatccaggtgcctcagcctccaaaggtgctgggattacaggtatgcccccccacacctggccCCCCCCCC a score=106059.0 s hg17.chr17_random 849235 1186 + 2618010 gtgagccaccatgcccggccTCTTTTTTTGTTAAGATAGGGTCTTGCggttgggtgtggtggctgacgcttgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtgg-tggcgcatgcctgtagtcccccctacctgagaggctgaggcaggagaattgcttgaacccgggaggcggacggaggttgcagtgaaccgagattgcgccattgcattccagcctggacaacagagcgagactccatctcaaaaaagagggaaaaaaaaaaa-gacagggtcttgctctgtcacccaggccagagtgcagtgacaggatcgcagcttactgcaacctcaaactcctgaactcaagtgatcttcccacctcagcctcctgagtagctggaactacagatatacgctaccatggtgcctggctaattttttttagtagagatggggtcttgctttgttgcctaggctggtctcgaactcctggcttcaagggattctctcacctcagcctcccaaagtgttgggattacaggcatgagacaccgtgcctggccTGTTTTTTCTTATTACATATTTTTGTTCTAGAATTAATTTTTCCAGAtttgcttgttttctttgttttgcttggttttgggtttttttg--ggggttttgtttgtttgtttgtttttttAAAGTAACTTCGCGTTACTTGCCAAATTTTTCAGGATTGGGATTTTATATTTTTGAACATAGTAAGCAGGTATATGAATAGTTTGCTAGTATCTAGGGGAGCTTTGTTTTGTTCCCCGTTGGTTACTAATACTTAAGGTTCATCTTTTTCCAGTGTCTGGGCTTCAGATGTTCAGAAGTTTAATCACATTCCACTTGTGGACTGCTTTTCTTCTTGTTCATCTTTCCTGGTAGGATATCACTTTTTTGGTTTCAAGCCCAAAGCAGGGGGTCATTTACTCAAGCTtcttgtcttgtcttgtcttgtctCTTCTAAtagagacagagtctcactgtgctacctagatagactatgttacttaaactcctgggcttaagcagtccttccacctcgcctcccaaaatgctgggattacagacACAGTGCCCACCCAGCCA s panTro1.chr19 20302154 1180 - 82489036 GTGAGCCACCGCGCCCAGCCTCTTTTTTTGTTAAGATAGGGTCTTGCggttgggtgtggtggctgacgcttgtaatcccagcactttgggaggccgaggtgggtggatcacaaggtcaggagatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaatacaaaaaattagccgggcgtgggtggcgcatgcctgtagtcccccctacctgagaggctgaggcaggagaattgcttgatcccgggaggcggacggaggttgcagtgaaccgagattgcgccattgcattccagcctggacaacagagcgagactccatctcaaaaaagaggaaaaaaaaaaaaagatagggtcttgctgtgtcacccaggccagagtgcagtgacaggatcgcagcttactgcaacctcaaactcctggactcaagtgatcttcccacctcagcctcctgagtagctggaactacagatatacactaccacggtgcctggctaattttttttagtagagatggggtcttgctttgttgcctaggctggtctcgaactcctagcttcaagggattctctcacctcagcctcccaaagtgttgggattacaggcatgagacaccgtgcctggccTGTTTTTTCTTATGACATATTTTTGTTCTAGAATTAATTTTTCCAAAtttgcttgttttctttgttttgcttggttttggtttttttttttggagttttgtttgtttgtttgtttttttAAAGTAACTTCGCGTTACTTGCCAAATTTTTCAGGATTGGGATTTTATATTTTTGAACATAGTAAGCAGGTATATGAATAGTTTGCTAGTATCTAGGGGAGCTTTATTTTGTTCCCCGTTGGTTCCTAATACTTAAGGTTCATCTTTTTCCAATGTCTGGGCTTCAGATATTCAGAAGTTTAGTCACATTCCACTTGTGGACTGCTTTTCTTCTTGTTCATCTTTCCTGGTAGGATATCACTTTTTTGGTTTCAAGCCCAAAGGAGGGGGTCATTTACTCAAGCCTCTTGtcttgtct----------cttctaatagagatagagtctcactgtgctacctagatagactatgttacttgaactcctgggcttaagcagtccttccacctcgcctcccaaaatgctgggattacagacACAGTGCCCACCCAGCCA a score=26095.0 s hg17.chr17_random 850421 171 + 2618010 CAAAGCCCCCAGTGTTGATGGGCCCTGGATTTCCACTTTT--------GTCCCTGGGGC--CTATAGCCTCAGCTTCCAAATCTGCTAC------ATCTCTGCTAGATCAGCAAATGACCCCAGAGCAAAAGTGGCCTAGAATGCAAAGCTTCCTCTTCATGGAATTTCATCCTCTTCTTCATCTTG s panTro1.chr19 20303334 171 - 82489036 CAAAGCCCCCAGTGTTGATGGGCCCTGGATTTCCACTTTT--------GTCCCTGGGGC--CTATAGCCTCAGCTTCCAAATCTGCTAC------ATCTCTGCTAGATCAGCAAATGACCCCAGAGCAAAAGTGGCCTAGAATGCAAAGCTTCCTCTTTATGGAATTTCATCCTCTTCTTCATCTTG s canFam1.chr12 2822297 171 - 75455811 CAGAATCCCCAGTTTTGGTAAAGTCTGGGCTTTAACTTTTCCCTGTCAGTCTCTAAGACGGCCAGAAGCTCAGCTT--GGTTCTGCTACTATTTTATTTTTTCTAGATCAGCAGATGACTTCAGAGCAAGAGTG--------------GCTTTCCTTCTCTGGAATCTTGTCTTTTATTTTATTTTA a score=47287.0 s hg17.chr17_random 850592 516 + 2618010 ATCACCTTATCTTGTTCTATGATTCTTTTAAGGAGAAGTTTTCCCTTCCTTCCAGCTTTTTTAGTTTTGTGGGTGTCAAGTAGGAGAGAGATAATTAGTTTGAATTATATACTCCTCTATTACCCAAATATAAAATCCTTTAAAAAAAAAAAAGATAAACTGAGACCTAGACAAATTAAGTAACCGTGTAAGACCACATAATCAATGGAAATCCTGGTCCAGAATCCTGAGTGATTTTAATGAAATAGTTCACAGTCATTTATTAAGAGCAGGGGCACCCTAGAAGGAATTTTTTGATTCTGTTGAACCAGATTTATATTTGGCACATGCTCATTCTTTTTAGACTTTTTAGATAGCCTAATAGGATAGAACCATCACTATGTTATATAAATGTGAAATCCATTTGAAAATATGGGACCTGTCAGTATAGGTACTGCTTGAACTGTAACTATGCATATATCTGATTGGCTTTTATGCCCTACGGTGAGAAGGAGGTCACCTTGAAGCTTTGCAAAG s panTro1.chr19 20303505 515 - 82489036 ATCACCTTATCTTGTTCTATGATTCTTTTAAGGAGAGGTTTTCCCTTCCTTCCAGCTTTTTTAGTTTTGTGGGTGTCAAGTAGGAGAGAGATAATTAGTTTGAATTATATACTCCTCTATTACCCAAATATAAAGTCCTTTAAAAAAAAAAA-GATAAACTGAGGCCTAGACAAATTAAGTAACCGTGTAAGACCACATAATCAATGGAAATCCTGGTCCAGAATCCTGAGTGATTTTAATGAAATAGTTCACAGTCATTTATTAAGAGCAGGGGCACCCTAGAAGGAATTTTTTGATTCTGTTGAACCAGATTTATATTTGGCACATGCTCATTCTTTTTAGACTTTTTAGATAGCCTAATAGGATAGGACCATCACTATGTTATATAAATATGAAATCCATTTGAAAATATGGGACCTGTCAGTGTAGGTACTGCTTGAACTGTAACTATGCATATATCTGATTGGCTTTTATGCCCTACGGTGAGAAGGAGGTCACCTTGAAGCTTTGCAAAG a score=64473.0 s hg17.chr17_random 851108 367 + 2618010 TAAGTTCTTGGTTCCATTTTTCACTTGAATCCCCCTTGGATATCCTCCAGAATGATGTGTTTTCTTTCCCATTGCAACATTATTTTCAGCTTTGTGGAGAAACAAAGTATGTTCCAAGTAGCAGGTAGTCACTGTAGGCCTTCTTTGAACTGTGAACTTTATTTTTTTGCACC-TGAACTGCTTTCTAAAACCACATAAACAATATGATAGGGAAGTTGCTATCTGAATAAA-AAAACAAAATAAAACCTCACAATGTGTTTGATCTAGTACTGAGCTACACTGGTATATGTGGGCTATATAGAATTATGTGGTTTAGATTACTTGTTTAAGTATAGCAGTGGCTTGGAGGAAAATACATTCTGAGTTT s panTro1.chr19 20304020 367 - 82489036 TAAGTTCTTGGTTCCATTTTTCACTTGAATCCCCCTTGGATATCCTCCAGAATGATGTGTTTTCTTTCCCATTGCAACATTATTTTCAGCTTTGTGGAGAAACAAAGTATGTTCCAAGTAGCAGGTAGTCACTGTAGGCCTTCTTTGAACTGTGAACTTTATTTTTTTGCACC-TGAACTGCTTTCTAAAACCACATAAACAATATGATAGGGAAGTTGCTATCTGAATAAA-AAAACAAAACAAAACCTCACAATGTGTTTGATCTAGTACTGAGCTACACTGGTATATGTGGGCTATATAGAATTATGTGGTTTAGATTACTTGTTTAAGTATAGCAGTGGCTTGGAGGAAAATACATTCTGAGTTT s canFam1.chr9 16568801 346 + 53642819 TGAGCTCCTGGTTTCATGTT-----------CTCCGTGTAATTCCTCCAGAATGGTGTGTTTTCTTTACCACTGCAAAACTTTTTTTTTTTTTTTTGCAAAACTATTTTGATTCCAGGTAGCAGGTGACTATTGCAAGCCTTTGTTGAAATTTGAGTTCTTTTTTATTGCACCATGAGCTCGTATCTAAAAC-----------TATGATAGGTAGGTTGCCATCTAAATAAATGAAACAAAACAAAATTTCATCACTTATTTCATGTAGTATTGAACAACACAGGCATTTGTGGGTTGTCTGGAGTTATGTGGGCTAGATTGCCTG-TTATATACAGCTGTGGCTTAGAGGAAATGACATTCTGAGTTC a score=45236.0 s hg17.chr17_random 851475 276 + 2618010 CAAATAGATAATTTGTAAAGGAAAATTTGAAGTACAGTTGACTTGGCACTTCTGATATTGAAATTTTAGAAGATTTTATTTCTGTATCTCAATGTAATGCCTAGGCAGAATCCACTAGATGCTTGTATAGATGGTATAAGCAATAATGATTTCAGCT-ATTTTAAAAA----------ATTTCAATCTTTTT-TTAATGTTGCCTCTTGAAATACCATCTTGTACTTCTCAT-----------TTTCCCTATACCTCCTTTTATGTGATTAAGTTTTATTATGTATAGACATAAAGGGg s panTro1.chr19 20304387 276 - 82489036 CAAATGGATAATTTGTAAAGGAAAATTTGAAGTACAGTTGACTTGGCACTTCTGATATTGAAATTTTAGACGATTTTATTTCTGTATCTCAATGTAATGCCTAGGCAGAATCCACTAGATGCTTGTATAGATGGTATAAGGAATAATGATTTCGGCT-ATTTTAAAAA----------TTTTCAATCTTTTT-TTAATGTTGCCTCTTGAAATACCATCTTGTACTTCTCAT-----------TTTCCCTATACCTCCTTTTATGTGATTAAGTTTTATTATGTATAGACATAAAGGGg s canFam1.chr9 16570105 289 + 53642819 CAAATGGACCATTTGCAAAAGAACTTTTGAAGTACAATTGAATTAGAACTTGTGTTATTAGAATTTTTAGAAGTTGTGTGTTTGTATCTCAGTATAATACCAGAGCAGAATCTATTAGAAGCTTGTGTAAATGATGTAGGCTATAACAACTTAGGCTGACTTTATATATTTTTTTCCTATTTCAATCTTTTTAAAAATGTAGACTTCTGAG---------TATACTTTTTTTAAAAAGTGGCCTTTCTCTGTACTTCCGTTCCTGTGACTAAATTTCA-TATGCTTAAACATAAAAAGG a score=118883.0 s hg17.chr17_random 851751 1290 + 2618010 gcctggcacagtggctcatgcctgcaatcccagcattttgggaggccaaggcacaaggattgcttgagcccaggagttcaagacaagcctacgcaatgcagtgagaccctgtctcaaacaaaaaaaaaaaaaaaaaaaaaaaaaGGTT--GGGGAGGGTGCtatgatattatgatacatatgttggttttcatccacagtttctgtcatagaacacccatagtccctgttatttcctaagtgactaaaacaatatacatatattttattgaaatatttggccttttattcttggtttttgaAGTGGCTTCAGTACAGCTTCAGATCAATAAAAGTGAAAGATGgtcttttgtaataacgttggggcactttaaacctcagaagcaggcttcagaaaacagaatcgctctctgaccttttcttgccttgcttttacctgctcctttttctccccaagcaggcaatagaaactaaaaatatactctgatcatcccccaacattctgtcttggagctgacagcaaagaaattatctgacctaccttgtctgattggaggtcataagacccccatttcagaaggcatcctgccctgtacttgggaggaaagaagttgcacagagaggccaagaagactctgaacagagaggccttgctaggtttccccactcagtctgttagcattaggtcctac-tttgtccaatcatatttctacccggttgtccatgcttcagtcgtgacggtccagtgaagtcctggaccgggtacagagagcttccagatagctgaacacgtggagggtcctggagggtggtgcacccagggagggtatgagagctctgcaccccttcccacatgccttgttctgtgcacctcttcatctgcattctttgtgctattctttataataaaccagtacacgtgttttcctgagttctgggcacagctttagcaaattaatcaaacctaagaagggggtcatgggaacactgacttgaagctggttggccagaagttctggatgaggcctggccttacaactagtgtctgaagtgggggcagtcttgtgagactgagccctctctcagcctgtgggatctaatgctatctccaggtagatagcatgagaattgaattggattagaaggtgctcagctggtggtatcttctgcagaactgattgcttcttgttggtggggagaaatccccacacatttggtcacagaagtctactgtgttgatgattgtggtgtaagagcagaggaaaagcaatttgaTTTTTCTCCACAAGGGGA s panTro1.chr19 20304663 1285 - 82489036 gcctggcacagtggctcatgcctgcaatcccagcattttgggaggccaaggcacaaggattgcttgagcccaggagttcaagacaagcctacgcaatgcagtgagaccctgtctcaaac--------aaaaacaaaaaaaAAAAGGTTTGGGGGGGGGTGCtatgatattatgatacatatgttggttttcgtccacagtttctgtcatagaacacccatagtccctgttatttcctaagtgactaaaacaatacacatatattttattgaaatatttggccttttattcttggtttttgaAGTGGCTTCAGTACAGCTTCAGATCAATAAAAGTGAAAGATGgtcttttgtaataacgttggggcactttaaacctcagaagcaggcttcagaaaacagaatctctctctgaccttttcttgccttgcttttacctgctcctttttctccccaagcaggcaatagaaactaaaaatatactctgatcatcccccaacattctgtcttggagctgacagcaaagaaattatctgacctaccttgtctgattggaggtcataagacccccatttcagaaggcatcctgccctgtacttgggaggaaagaagttgcacagagaggccaaggagactctgaacagagaggccttgctaggtttccccactcagtctgttagcattaggtcctacttttgtccaatcatatttctacacggttgtccatgcttcagtcgtgacggtccagtgaagtcctggaccgggtacagagagcttccagatagctgaacacgtggagggtcctggagggtggtgcacccagggagggtatgagagctctgcaccccttcccacatgccttgttctgtgcacctcttcatctgcattctttgtgctgttctttataataaaccagtacatgtgttttcctgagttctgggcacagctttagcaaattaatcaaacctaagaagggggtcatgggaacactgacttgaagctggttggccagaagttctggatgaggcctggccttacaactagtgtctgaagtgggggcagtcttgtgagactgagccctctctcagcctgtgggatctaatgctgtctccaggtagatagcatgagaattgaattggattagaaggtgctcagctggtggtatcttctgcagaactgattgcttcttgttggtggggagaaatccccacacatttggtcacagaagtctactgtgttgatgattgtggtgtaagagcagaggaaaagcaatttgaTTTTTCTCCACAAGGGGA a score=19093.0 s hg17.chr17_random 853041 92 + 2618010 AGAAAATGTTTCATGATTCAACTAATGATTTACCTTTCATTGTAAGGTTATCATGCTCAAGTATTAATGTAGGAAGG-CTTTTTTGATGCAGA s panTro1.chr19 20305948 92 - 82489036 AGAAAATATTTCATGATTCAACTAATGATTTACCTTTCATTGTAAGGTTATCATGCTCAAGTATTAATGTAGGAAGG-CTTTTTTGATGCAGA s canFam1.chr9 16570394 93 + 53642819 GAAAAAGATTTCATGTCTCAATTAATGGTTTACCTTTCAGTGCATGATTATGATACTCAAATATTAATATAGGAAGATTTTTTTTGATGGAGA a score=33743.0 s hg17.chr17_random 853133 383 + 2618010 gtgtgtgtgtgtgtgtgtgtatatacgtgtgtgtttgtAGAGGGCTAACATTAAAAAGGGAAATGTAATAAGGAAGAAGAAATGGTGTTCTAAACTTAAAACCCATTTCATCTGCTAAATCGTCCTAGTGAAATACCAACTTTAGTTAATTTTAAAAAAAGTTTAGTTAATTGT---AAAAAAAAAAAGAATCTCTTCATTATATTTTAAAAACCATTTATGTTTCCTTTTTCTGTAATTTATTCATATTTGTCCATTTTAAATTTCAGTGTTATTCTTATTCTTGTTATTGATTTTTTAAAACGTGGTCTTTATATTTGAGTGAAATTAACCTTCCATCATGAGTTGGAGCATTTTTTCCCCAATATATACTTCTCTTTTGATTT s panTro1.chr19 20306040 384 - 82489036 --gtgtgtgtgtgtgtgtgtatatatgtgtgtgtttgtAGAGGGCTAACATTAAAAAGGGAAATGTAATAAGGAAGAAGAAATGGTGTTCTAAACTTAAAACCCATTTCATCTGCTAAATCGTCCTAGTGAAATACCAACTTTAGttaatttaaaaaaaagtttagttaattgtaaaaaaaaaaaaaaGAATCTCTTCATTATATTTTAAAAACCATTTGTGTTTCCTTTTTCTGTATTTTATTCATATTTGTCCATTTTTAATTGCAGTGTTATTCTTATTCTTGTTATTGATTTTTTAAAACGGGGTCTTTATATTTGAGTGAAATTAACCTTCCATCATGAGTTGGAGCATTTTTTCCCCAATATATACTTCTCTTTTGATTT a score=3205.0 s hg17.chr17_random 853516 33 + 2618010 TGCTTATGGTCATTT----TATAATGCCATGGTTTTt- s panTro1.chr19 20306424 33 - 82489036 TGCTTATGGTCATTT----TATAATGCCATGGTTTTT- s canFam1.chr9 16579624 32 + 53642819 TGTTTCTAGTAGTTTTGAGTATAA------GATTTTTC a score=29290.0 s hg17.chr17_random 853549 311 + 2618010 tttgttgtttgtttg--ttttttttttttttgagacggagtctcgctctctcagccaggctggagtgcagtggcgtgatctcagctcactgcaacctccacctccccgtttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgtgcaccaccacgcctggctaatttttgtatttttagtagtaatggagtttcaccatgttggacaggctggtctcagactcctgacctcaggtgatctgcccatcttgacctcccaaagtcctgggattacaggcatgagccaccatgcccagcc s panTro1.chr19 20306457 313 - 82489036 TTTGTTGtttgtttgttttttttttttttttgagacggagtctcgctctctcagccaggctggagtgcagtggcgtgatctcagctcactgcaacctccacctccccgtttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcgtgcaccaccacgcctggctaatttttgtatttttagtagtaatggagtttcaccatgttggacaggctggtctcagactcctgacctcaggtgatctgcccatcttgacctcccaaagtcctgggattacaggcatgagccaccatgcccagcc a score=40365.0 s hg17.chr17_random 853860 243 + 2618010 TGGTCATGGTTTTATACATGCTATGTTTATAATCAAATTTTACTTCTATTTAATAGATGACTAACAC--ACTTACACATAG----------ATGCTTATACCCAAATATATATGTTT------ATAGATTTTAAAATGCTAATTATATTTAAAAGG---------CCTAATAAGTAG--------------TTTCAGCAAAAGCTGTTATATATATGTATATAATGGACCAATTGC-AGTTGGATCAATAAAGAACTGTA--AGGTGTGTTATGATCTAGAAAAGTG s panTro1.chr19 20306770 244 - 82489036 TGGTCATGGTTTTATACATGCTATGTTTATAATCAAATTTTACTTCTATTTAATAGATGACTAACAC--ACTTACACATAG----------ATGCTTATACCCAAATATGTATGTTT------ATAGATTTTAAAATGCTAATTATATTTAAAAGG---------CCTAATAAGTAG--------------TTTCAGCAAAAGCTGTTATATATATGTATATAATGGACCAATTGCAAGTTGGATGAATAAAGAACTGTA--AGGTGTGTTATGATCTAGAAAAGTG s canFam1.chr9 16579656 282 + 53642819 TTGTCACAAATTTATATATACTTTGGTTACATTCAAGTTTTGCTTCTATTTGGTATACTGCTAACATAAACATACACGCAAGCATGTGCACATGCTTATACCCAAATGTGTGTATTTATATCCATAAATTTGAAAATAGTAATTATACTTAAAAGAATTTTTTTTTCTGAAATGTAGCACTCCCTTAGTGATTTCAGCATGAGCC-TTATGTATACATATATAATGGATTAGTTGC-AGTTAGATTAATAAAGGATTGTATTAGATATATT---ATCTAGAAAGGAG a score=29060.0 s hg17.chr17_random 854103 312 + 2618010 Attc---ttttttttttttgagatggagtcttgctctgttgcccatgctggagtgcagtggcacgatctcggctcactgcaagctccgcctcccgagttcacgccattttcctgcctcagcctcctgggtagctgggactacaggcacgtgccaccacacccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccgccctccttggcctccagaagtgctggtattacaggcgtgagccactgctcccggccCTGAAAAATGTTTCT s panTro1.chr19 20307014 315 - 82489036 tttctttttttttttttttgagatggagtcttgctctgttgcccatgctggagtgcagtggcacgatctcggctcactgcaagctccgcctcccgagttcacgccattttcctgcctcagcctcctgggtagctgggactacaggcacgtgccaccacacccagctaattttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccgccctccttggcctccagaagtgctggtattacaggcgtgagccactgctcccggccCTGAAAAGTGTTTCT a score=9395.0 s hg17.chr17_random 854415 54 + 2618010 TAACAATAActaggaactgtgctgtgtgttttatataagagtatattatataat s panTro1.chr19 20307329 54 - 82489036 TAACAATAACTAGGAACTGTGCTGTGTGTTTTATATAAGAGTATATTATATAAt s canFam1.chr9 16579953 53 + 53642819 TAattatgaccagacactgtgctaagcattttacat-agacaatgttgtataat a score=19333.0 s hg17.chr17_random 854469 215 + 2618010 tttttttttctttgagatggagtctcactctgttgcccagactgagtgcagtggtgcgatctcagctcactgcagcctctacctcccaggttcaagcgattctcctgcctcagcctcccaagtagttgggattacaggcgcacgccaccatgccctgctaatttttgtatgtttagtttta-ccatgttggccaggctggactcaaactcctgacc s panTro1.chr19 20307383 215 - 82489036 tttttttttctttgagatggagtctcactctgttgcccagactgagtgcagtggtgcaatctcagctcactgcagcctctacctcccaggttcaagtgattctcctgcctcagcctcccaagtagttgggattacaggcgcacgccaccatgccctgctaatttttgtatgtttagttttacccatg-tggccaggctggactcaaactcctgacc a score=18183.0 s hg17.chr17_random 854717 201 + 2618010 gctgggattacaggtgtgagccaccgtgcctggcccccaatctttaattaagaagcaggtgccaggcacaatggtatactcctataatctcagctactcaggaggctgaggtgggaggattgccagtgcttgagcccaggagtttgagaccagcctgaacaacatagtgagacccttatctcaattttaaaaagaaagaat s panTro1.chr19 20307705 201 - 82489036 gctgggattacaggtgtgagccaccgtgccgggccCCCAATCTTTAGGTACGAAGCAGGTgccaggcacaatggtatactcctataatctcagctactcaggaggctgaggtgggaggactgccagtgcttgagcccaggagtttgagaccagcctggacaacatagtgagacccttatctcaattttaaaaagaaagaaT a score=13367.0 s hg17.chr17_random 854918 84 + 2618010 taggtaatgatatgattttaattttataggtgtggaaacggaggcttagagaattgaataaTCATATATAC---------------CTTATAAGATTCT s panTro1.chr19 20307906 84 - 82489036 TAGGTAATGATATGATTTTAATTTTATAGGTGTGGAAACGGAGGCTTAGAGAATTGAATAATCATATATAC---------------CTTATAAGATTCT s canFam1.chr9 16580024 88 + 53642819 taggtaatg-----------attttatatgtgtgaagagagaggctcagaTTGTTGAATAGCCATATATTCTCTCCTATTCTCCCACTTAAAAAATGCT a score=2902.0 s hg17.chr17_random 855002 31 + 2618010 CTCATACTCCATTTTTAAAAGTTTTCGATCA s panTro1.chr19 20307990 31 - 82489036 CTCATACTCCATTTTTAAAAGTTTTCGATCA a score=12242.0 s hg17.chr17_random 855033 78 + 2618010 AGTTTAAGTT------------------GTATTGATACACGATATATAGTGAAGTGTCTATGTACAATGCTTAATTTAC--ATATATACATTTccaat s panTro1.chr19 20308021 80 - 82489036 AGTTTAAGTT------------------GTATTGATACACGATATATAGTGAAGTGTCTATGTACAATGCTTAAGTTACATATATATACATTTccaat s canFam1.chr9 16580911 94 + 53642819 AGGTTAAGTTTGATCAAGTTTAATTGTAACATTTATAAATG--ATATAGTAAAATGTCTACTTATAATGCTTAATATAC--ATATATGCATTCTAAAT a score=73765.0 s hg17.chr17_random 855111 791 + 2618010 tatgaatatattgcaaactgtattagtgaatgaattattcatttatcatatcagtattatatattactataatatataaatatactaattatatattagtattaatgtaaacattaatttagaaatacttttttctccagtgaagcctcctcagacttctcatatgcatcttcagtatttatgggtttctaccctttaaacagtctaacagttccagagcaaatattatcttctaagaggtttgagatagatccttatttgaatcagtatattatgttgtgactggaaattttatccctagccatgtctctattcacataacattagtaaatgtgatttttcattaatatatttcatatgagtagcattaatgatctccatgacataattacttagtctgttgcttttgaagtgattcattcattctacagatacttactgaacacacactatgtgccagaaactgctagcattggaagtagagctgtgaacaaaatcaagcatcaacatttctgatatttgagaagacaggcaacaagcaaatatgtgatgtaaagtagtgataagtgctgtaaaatcacaagagggtatagaatgaggattgttcttcaagttgatagaacagatctttaaagaagtgatttgaggctgggcgtggtggcttacacctgtaatcccaacactttgggaggccgaggcgggtggatcatgaggtcaagagactgagaccatcctggccaacgtgctgaaactccgtctctactaaaaatacaaaaattagccaggcgtgg s panTro1.chr19 20308101 791 - 82489036 tatgaatatattgcaaactgtattagtgaatgaattattcatttatcatatcagtattatatattactataatatataaatatactaattatatattagtattaatgtaaacattaatttagaaatacttttttctccagtgaagcctcctcagacttctcatatgcatcttcagtatttatgggtttctaccctttaaacaatctaacagttccagagcaaatattatcttctaagaggtttgagatagatccttatttgaatcagtatattatgttgtgactggaaattttatccctagccatgtctctattcacataacattagtaaatgtaatttttcattaatatatttcatatgagtagcattaatgatctccatgacgtaattacttagtctgttgcttttgaagtgattcattcattctacagatacttactgaacacacactatgtgccagaaactgctagcattggaagtagagctgtgaacaaaatcaagcatcaacatttctgatatttgagaagataggcaacaagcaaatatgtgatgtaaagtagtgataagtgctgtaaaATCACAAGAGGGTATAGAATGAGGATTGTTCTTCAAGTTGATAGAACAGATCTTTAAAGAAGTGATTTGAggctgggcgtggtggcttacacctgtaatcccaacactttgggaggccgaggcgggtggatcatgaggtcaagagactgagaccatcctggccaacgtgctgaaactctgtctctactaaaaatacaaaaattagccaggcgtgg a score=108330.0 s hg17.chr17_random 856002 1238 + 2618010 ccagcctgggcgaca-gagcaagactcc-atctcaaaaaaaaaaaaagatgattcgaggcttcg-tgtggtggttcatgcctgtaatccctgcactttgggaggctgaggcaggaggatcacttgagctcgggagtttgaggccagcctgggcaacatggtgaaaccccatgtctataaaaaatacaaaaattagtcgggtgtgatggtgggcgcctgtagtcctagctatttgggaggctgaggtgggaggaacacttgaacctgagaggtcaaggttgcagtgagccaagatggcagcactgtactcc-aggttgggcaacagagtgagaccctgtctcaaaaaaaaaaaaaaaa-gtgatt-tgagcagaggcctgaatgacataaagtgtttagatatctggaga----ctttgcaagcagatgcagaaaccctggggttggaaaatgcttacagtctgaatagtaaaagaggcAccaccagcatgacttctagttattgtgctacaccctgcacattttttttt-ctttttcgagacagggtctcactctgtcacctagatgggagtgcagtggcatgttcatggctcactccagcttcaacctcctaggcttcagcaatgctcttgcctcagcctttggagtagctgggaccacaggtttgtgtcaccacgtatgactaatttttttttatttttcc-tgtgttgcc-caggttggttttgaactcc-tgggttc-aggtgatcctcctgccttggcctcccaaagtgctgggattccaggcaagagccaccatgcctggccctgggcaacatttttattgtcagtcatttaatagcctagtctaatggatgtgtagtg-atatgtcattgtgattttaatttgcctttccttaatggctaatgatgctgaacacttttttatgtgcttttttttttttttt--gccatttataaattttcctttgtgaagtttaagtcttgccatttttaaattgggttgtttacctttttattcaacagctgtaggttttttgtttttttttttttg-atacagagtctcactctgtctccaggctgtagtgcagtggcacatcttggctcactgcaacctccgttcccaggttcaagtgattctcctgcctcagcctcccaagtagctgagataacaggcatgcaccaccacgcatggtccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagcc s panTro1.chr19 20309204 1255 - 82489036 ccagcttgggcggcaagagcaggactcccatctcaaaaaaaaaaaaaaaagaTTCGAGGCTTCGATgtggtggttcatgcctgtaatccctgcactttgggaggctgaggcaggaggatcgctggagctcgggagtttgaggccagcctgggcaacatggtgaaaccccatgtctataaaaaatacaaaaattagtcaggtgtggtggtgggcgcctgtagtcccagctatttgggaggctgaggtgggaggaacacttgaacctgagaggtcaaggttgcagtgagccaagatggcagcactgtactcccaggttgggcaacagagtgagaccctgtctcaaaaaaaaaaaaaaaaaGTGATTAtgagtagaggcctgaatgacataaagtgtttagatatctggagaaacactttgcaagcagatgcagaaaccctggggttggaaaatgctta--gtctgaatagtaaaagaggcAccaccagcatgacttctagttattgtgctacaccctgcacattttttttttctttttcgaaacagggtctcactctgtcacctagatgggagtgcagtggcatgttcatggctcactccagcttcaacctcctaggcctcagcagtgctcttgcctcagcctttggagtagctgggaccacaggtttgtgtcaccacgtatgactaatttttttttatttttccgtgtgttgccacaggttggttttgaactccgtgggttcgaggtgatcctcctgccttggcctcccaaagtgctgggattccaggcaagagccaccatgcctggccctgggcaacatttttattgtcagtcatttaatagcctagtctaatggatgtgtagtgtatatgtcattgtgattttaatttgcctttccttaatggctaatgatgctgaacacttttttatgtgctttttttttttttttttgccatttataaattttcctttgtgaagtttaagtcttgccatttttaaattgggttgtttacctttttattcaacagctgtaggTtttttttttttttttttttggatacagagtctcactctgtctccaggctgtagtgcagtggcacatctcggctcactgcaacctccgttcccaggttcaagtgattctcctgcctcagcctcccaagtagctgagataacaggcatgcaccaccacgcatggtccacccacctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccagcc a score=8457.0 s hg17.chr17_random 857240 35 + 2618010 CAGAAAGGAACATTCTTAAGCATTGAAGTGATTCT s panTro1.chr19 20310459 35 - 82489036 CAGAAAGGAACATTCTTAAGCATTGAAGTGATTCT s canFam1.chr9 16583309 35 + 53642819 CAGGAAGGTACATTCTTGAGCATTAAGGTGATTCT a score=5193.0 s hg17.chr17_random 857275 28 + 2618010 TGTCAAATTT--GATTTCTATTCAAATTTA s panTro1.chr19 20310494 28 - 82489036 TGTCAAATTT--GATTTCTATTCAAATTTA s canFam1.chr9 16583455 30 + 53642819 TGCCAAGTTCTGAGTTTCTTTTCAAATTTA a score=29039.0 s hg17.chr17_random 857303 310 + 2618010 GGAGCTGggccaggcacggtggctcagccctgtaatcccagcacttcgggaggctgaggtgggtagattgcctgaatccaggagtttgagaccaggctggacaacctggggaaacccctgtctctactaaaaatacaaaagattagatgggcctagtggcacctcacgcctgtagtccccagctaccccggaggctgaggtgggagaatctcccgaacctgatgggaaaggtagcagtgagttgagatagtgccactgtactccagcctgggcaacaaagtgagaccctgtctcaaaaaacaaaacaaaa s panTro1.chr19 20310522 310 - 82489036 GGAGCTGggccaggcacggtggctcagccctgtaatcccagcacttcgggaggctgaggtgggtagattgcctgaatccaggagtttgagaccaggctggacaacatggggaaacccctgtctctactaaaaatacagaagattagatgggcctagtggcacctcacgcctgtagtccccagctaccccggaggctgaggtgggagaatctcccgaagctgatgggaaaggtagcagtgagttgagatagtgccgctgtactccagcctgggcaacaaagtgagaccctgtctcaaaaaacaaaacaaaa a score=1478.0 s hg17.chr17_random 857613 11 + 2618010 CCAAACAAATT s panTro1.chr19 20310832 11 - 82489036 CCAAACAAATT s rn3.chr10 24735592 11 - 110733352 CTGCTTAAATT a score=39413.0 s hg17.chr17_random 857624 158 + 2618010 TAGGAGCTAGCTTGTGATTGTAGAAATAATTTTGGCAAtagaagtgaggga---actgagttgtagtctagctagttaacatgtgacaaaccattaactttat-----atgtctcattttcttcatctgtaaaatgaggaagatttgattagaggatttattaaag------ s panTro1.chr19 20310843 158 - 82489036 TAGGAGCTAGCTTGTGATTGTAGAAATAATTTTGGCAAtagaagtgaggga---actgagttgtagtctagctagttaacatgtgacaaaccattaactttat-----atgtctcattttcttcatctgtaaaatgaggaagatttgattagaggatttattaaag------ s rn3.chr10 24735603 163 - 110733352 TAGAAGAAATTTTATGATAGCAAAAAGCATCTTAGAAATAGATACAAGAAGACTACTGACTTCTAGTTTAGCCATGCAGTCTTCATCAAATCCTTAACTCTGTTTTTCATTTTCCATTTTCCTTATC--TACAGTGAGGAAGCTTTACTCAGAGGA-TTGCTGAAA------ s canFam1.chr9 16583485 154 + 53642819 TAGGAGCTAATTTATGATGGTAGAAAAGATTTTGGCAAT--------ggga---actgaattctagtccagctatatgaatgtaggcaaatcattaactttat-----atatctcattttcttcatctgta-aatgaggaataattgattaaagtt-cttttaaaatctgag a score=54596.0 s hg17.chr17_random 857782 342 + 2618010 ttcttttaaaatctgaaatt-ACAGTTTCTTAATTGGTTTTGTAGAGATTTTGGCTTTATAA--AAATGTGTGAACCATAGTGACAGCAGAAACA--TTTGAAATCCTATATTTGGGTGATTCATAAAAGAAAGGAAGAATTATGGGCATCTTGCCT-----GTAAAATGTTATGTAATCTGAATCATTGTTACCCACAGC-------ATCCTGTGACTGATAAAGGTACTCATGGCCACCTCTCCTCCCTTGTCTTTCTGTAGTACTTTCCTTTCTCCCCACCTCAAtaatagctttattgatgtataattcacataccatacatgtcatctattaatatttaaagcatacaattcag s panTro1.chr19 20311001 342 - 82489036 ttcttttaaaatctgaaatt-ACAGTTTCTTAATTGGTTTTGTAGAGATTTTGGCTTTATAA--AAATGTGTGAACCATAGTGACAGTAGAAACA--TTTGAAATCCTATATTTGGGTGATTCATAAAAGAAAGGAAGAATTATGGGCATCTTGCCT-----GTAAAATGTTATGTAATCTGAATCATTGTTACCCACAGC-------ATCCTGTGACTGATAAAGGTACTCATGCCCACCTCTCCTCGCTTGTCTTTCTGTAGTACTTTCCTTTCTCCCCGCCTCAAtaatagctttattgatgtataattcacataccatacatgtcatctattaatatttaaagcatacaattcag s rn3.chr10 24735766 229 - 110733352 CTCCTTCATAGTCCGAACTTAACTGTTTT----TTGGCTTTGTAAAGGTTTTAGTTTTACAC--ACACGTATGAACCATAGTGATAATACAGACATGTTTGTAATTCTG---CTAGCCGACTTAAAGCACATAAGG------GTGTGGCTCATGCCT-----GTAGG--TACACCTAACCTGA---------AACTGCAGG-------AGTGC-TGCCTCATGAAGTCATTCAT-------------------------------------------------------------TTTAAGAATGAATAAGGTAC------------------------------AACCTATGTTTCAG s canFam1.chr9 16583836 303 + 53642819 TTCTTTTAAAATCTGAAATT-ATAGTTTTTTA-TTGGTTTTGTAAAGA-TTTAGCCCTATAAATACATGTTTGAACCATAATGGTATTAGAAACC--TTGAAAATTTAATATTAGGGTGATTCATAAAAAGAAATT--GATTGTGGGCATCTTGCCTAGCTCATAGGATGTTATTAAATCTGAATCACTGTTATGCATATCAAATTTAAGCCCATGACTAATAAAGCTACCTTT-------------------------------------------TTCTCTTTTaataacagtttcattgagatacaattcacataccatacaattcatt------cacttaaagtgtacaattcag a score=14066.0 s hg17.chr17_random 858124 103 + 2618010 cggtttttagtctatttacaga-gttgtacagccatcatcacaatcaattttagaacactttctgaactccagaaagaaagtaccc------------tgcctatttcccctctat s panTro1.chr19 20311343 103 - 82489036 cggtttttagtctatttacaga-gttgtacagccatcatcacaatcaattttagaacactttctgaactccagaaagaaagtaccc------------tgcctatttcccctctat s rn3.chr10 24735995 107 - 110733352 C----TTTAGATTGTCCTCAGGCTTTGTGTGACCATCAACAGACCCAATC----AACAC-TTCAAAGCTCCAAGAAGAAAGTACTCATTAGAAGTCATTGCCCATGTCCCCTCAAT a score=873.0 s hg17.chr17_random 858227 9 + 2618010 cacctagcc s panTro1.chr19 20311446 9 - 82489036 cacctagcc a score=8346.0 s hg17.chr17_random 858236 100 + 2618010 ctaggcaactatgaatctactttcagcctccatagattgccctgttatggacaaatatgtggctggtttcttagtataatgttttcaaggttatttacgt s panTro1.chr19 20311455 100 - 82489036 ctaggcaactatgaatctactttcagcctccatagattgccctgttatggacaaatatgtggctggtttcttaggataatgttttcaaggttatttacgt s canFam1.chr9 16584437 39 + 53642819 tttggctactatga-------------------------------------------------------------ataatgcttctatgaacatttgtgt a score=0.0 s hg17.chr17_random 858336 40 + 2618010 tgtagcatgtgtcagctatttcatttctttttattgtcaa a score=2447.0 s hg17.chr17_random 858336 26 + 2618010 tgtagcatgtgtcagctatttcattt s panTro1.chr19 20311555 26 - 82489036 tgtagcatgtgtcagctatttcattt a score=2255.0 s hg17.chr17_random 858362 14 + 2618010 ctttttattgtcaa s panTro1.chr19 20311581 14 - 82489036 ctttttgttgtcaa s rn3.chr10 24736394 14 - 110733352 CTGTTCATTGCTGA a score=28183.0 s hg17.chr17_random 858376 277 + 2618010 ataacattcagttgtatggata-taccacattttatctattccatcagttgatggacatttg-----agttgttttcattttgggattattataaataatgctact---atgaacatttgtatacaaacattatgtggacatgtgttttcatttctct-tggacatatacttaggaatgggattgctgtatc----acatgatacctctgtatttaaccttttgaggaattgccaaactgttttccaaaagtggctgcacca-tttacat-tccca----------------------ctatcaatata--t----gctcc s panTro1.chr19 20311595 277 - 82489036 ataacattcaattgtatggata-taccacattttatctattccatcagttgatggacatttg-----agttgttttcattttgggattattataaataatgctact---atgaacatttgtatacaaacattatgtggacatgtgttttcatttctct-tggatatatacttaggaatgggattgctgtatc----acatgatacctctgtatttaaccttttgaggaattgccaaactgttttccaaaagtggctgcacca-tttacat-accca----------------------ctagcaatata--t----gctcc s rn3.chr10 24736408 265 - 110733352 ATAACAATTGATTT--TGGACACTACCACATTTTATCTATT-CATTAGTT-ATGGACAGTCAATGACAGAAGCCCT-ACATTGGAGCCATTATAATTGTGGTCATTTACATGTCTTTGTGTAGACAGAGAGAGCGGGAGAA------------------TGAAAACACTCATGGGAATGTGATTGCC-CACCATAAATAAGGCAACTGTGTGTTTAACCTTTTGATGAAGTAATAAACTGTCTACTCGGTG----TGCACC--CTTACATATTCTT----------------------CCAGCAATGTACCT----GCTCT s canFam1.chr9 16584476 250 + 53642819 ataagtttc---tgtgtggaca----tacatttt---tatttc-----------------------------------tcttgga-----tatatctatatctcct-agatatctatatctatatatctat---------atctatatctatctatctatatatatgtatataggagagggatttctgggtc----ttatggtaagtcta---ataatcatatgaggaacttccgggctgttttcctaa-gtggctgcaccattttacat-tcctattagcctctgcgttcctaccagccaaccatgta--tgagggttcc a score=6389.0 s hg17.chr17_random 858653 26 + 2618010 agtttctctacatcctACCTTATACt s panTro1.chr19 20311872 26 - 82489036 agtttctctacatcctACCTTATACt s canFam1.chr9 16584726 26 + 53642819 aatttctttacatccttccttatact a score=28799.0 s hg17.chr17_random 858679 311 + 2618010 tttttttttttttt-ctttttttgagacagagtctcgctctgtcgcccaggctggagtacagtggcacaatctcggctcactgcaacctccgcctcctgagttcaagcaattctaaattatcatgcctcagcctcccgcatagctgggattagaggcgtttgccaccatgcctggctaagttttatatttttagtaaaaatggggtttcgccatgttggccaggctgttctcgaactcttgacctcaggtgatccacacgcctcgtcctcccaaaatgctgggattataggtgtgagccaccatgtccggcc s panTro1.chr19 20311898 312 - 82489036 tttttttttttttttctttttttgagacagagtctcgctctgtcgcccaggctggagtacagtggcacaatctcggctcactgcaacctccgcctcctgagttcaagcaattctaaattatcatgcctcagcctcccgcatagctgggattagaggcgtttgccaccatgcctggctaagttttgtatttttagtaaaaatggggtttcgccatgttggccaggctgttctcgaactcttgacctcaggtgatccacacgcctcggcctcccaaaatgctgggatcataggtgtgagccaccatgtccggcc a score=2647.0 s hg17.chr17_random 858990 16 + 2618010 --TGATTGGCCAGCTTTT s panTro1.chr19 20312210 16 - 82489036 --TGATTGGCCAGCTTTT s canFam1.chr9 16584752 18 + 53642819 tagtattatctagctttt a score=11225.0 s hg17.chr17_random 859006 63 + 2618010 CATTTGGAATGGGGATAGGACATAGTTGGAAGTTGGTGT-CTTTGGTTATTTCCCTAACATGTC s panTro1.chr19 20312226 63 - 82489036 CATTTGGAATGGGGATAGGACATAGTTGGAAGTTGGTGT-CTTTGGTTATTTCCCTAACATGTC s canFam1.chr9 16584892 64 + 53642819 CTTCTGGGATGTGAATGTGATGTGGTTGGAAGTCGATCTGCCTTAGCTCTTTCCCTAAAGTGTC a score=20563.0 s hg17.chr17_random 859069 88 + 2618010 ---CAAGCATCCTAAAGTATCAGTCAAATAAGCAGTCTCTTCTCATTCC----TGGCAGAGAGTAAGTCA---AAGCCTTAATTCAATTTG---CATACCT s panTro1.chr19 20312289 88 - 82489036 ---CAAGCATCCTAAAGTATCAGTCAAATAAGCAGTCTCTTCTCATTCC----TGGCAGAGAGTAAGTCA---AAGCCTTAATTCAATTTG---CATACCT s rn3.chr10 24737150 90 - 110733352 ---TAAGCTTCCTTAAGCAGTACTAAAGTTAGCAGTTTCTTTTCACTTCTGGGTGGTAGAGGATAAATAATTGGAGTTCTAAT---ATCTG-----TACAG s canFam1.chr9 16584956 89 + 53642819 AACTGAGCATTCTGAAGTA----TCAAATAAGCAATGTCTTCTCACTCT----TGCTAGAGAGCAAATCA---AAGCCATAATTT-ATTTAATCCATACAT a score=2590.0 s hg17.chr17_random 859157 23 + 2618010 GTTTTCATGTAACAACAAATAAt s panTro1.chr19 20312377 23 - 82489036 GTTTTCATGTAACAACAAATAAt s rn3.chr10 24737240 23 - 110733352 GTTCTTATTTATTTTTGCAAAAT a score=28136.0 s hg17.chr17_random 859180 295 + 2618010 tttttttttttttgagacagagtttctctgttgttgtttaggctggagtgcaatgatgcgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgccttagcctcccaagtagctgagattataggcatgcaccaccacagccggctagttttgtatttttagtagagacggggtttctccgtgttggtcaggctggtcttgaactcctgaccccaggtgacccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcc s panTro1.chr19 20312400 295 - 82489036 tttttttttttttgagacagagtttctctgttgttgtttaggctggagtgcaatgatgcgatcttggctcactgcaacctccgcctcccgggttcaagcgattctcctgccttagcctcccaagtagctgagattataggcatgcaccaccacagccggctagttttgtatttttagtagagacggggtttctccgtgttggtcaggctggtcttgaactcctgaccccaggtgacccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccacgcctggcc a score=2073.0 s hg17.chr17_random 859475 12 + 2618010 ---ACAACAAAGAAT s panTro1.chr19 20312695 12 - 82489036 ---ACAACAAAGAAT s rn3.chr10 24737263 15 - 110733352 ATAAGAGCACAGAAT a score=26353.0 s hg17.chr17_random 859487 165 + 2618010 TTTACCAGAAGTGGGTATGATTTATATCTTAGTTTGAATTGCTACTTACCTTT-----GGGGAACAG-----ACCTTTCCTTGATGTATCTTTAACACTGAAATCTTGGCAAGTTGCCAAGTCTC-AAATGTTCATG------------AGTA-AGACTGC----AATATCACAATATCATAGTCACACAGGA---------------------- s panTro1.chr19 20312707 164 - 82489036 TTTACCC-AAGTGGGTATGATTTATATCTTAGTTTGAATTGCTACTTACCTTT-----GGGGAACAG-----ACCTTTCCTTGATGTATCTTTAACACTGAAATCTTGGCAAGTTGCCAAGTCTC-AAATGTTCATG------------AGTA-AGACTGC----AATATCACAATACCATAGTCACACAGGA---------------------- s rn3.chr10 24737278 173 - 110733352 CC------AGAAAAGTGTGATTTCTTTCTTAGTTTACAT---TATCTACTTTG-----GGGAGAGAGGTGCAAGACTTCCATGA--TATTTCTAACAATGAACTCTTGACAATGTAGTAATCTTCTGAAGATTTGTGCTGCACAGATGCAGCATAGAAAGT----AATATCGTTATGTAAGAATTAGAATGAA---------------------- s canFam1.chr9 16585248 194 + 53642819 TTTATTGGAATTAAATATGACCCATATTTTAGTTGGAATTGTTACCTGTCTTTGGCTGGGGGGGCAG-----AACTTTCATTGATATGTCTTTAACACTGAAGTCTTGGCAGTTTTCT--CTTTC-AAATATTCACG------------AGTA-AAACTGCTACAAAGAAAGTAACATCTTAGTTGCACAAAGGTGGGAATGAAGCATGTTGGGA a score=24062.0 s hg17.chr17_random 859652 154 + 2618010 ATCTGATAGAAAAGC--ATCACATTTATAA-AGCCTTCTTTCCTGTACATCACTGACGTTTTGTG--------AATTTTAAAGAATT-----------TGTAATTATTTTTAAGGAGCATATTTAATGTAGTTAATGTAACCTAGAATAGGCTCATTTGAAATGAAACTCTTGCTA s panTro1.chr19 20312871 154 - 82489036 ATCTGATAGAAAAGC--ATCACATTTATAA-AGCTTTCTTTCCTGTACATTACTGACGTTTTGTG--------AATTTTAAAGAATT-----------TGTAATTATTTTTAAGGAGCATATTTAATGTAGTTAATGTAACCTAGAATAGGCTCATTTGAAATGAAACTCTTGCTA s canFam1.chr9 16585442 174 + 53642819 ATCTGGCAGAAAACCTTTTCATATTTATAGTAGCCCTGTTTCCCTTGTATCATAAAAATTTTCTGGGGAAAAAAAGTTTTATGAATTAATACAGGTTGTATAATTGTGTTTCAGGAGCATATTTAACCTAG--GATGTGGAATAAAATAGGTTAGTTTGAAATGACACTTTTGTTA a score=11293.0 s hg17.chr17_random 859806 31 + 2618010 ATAGGAACTTAATTCACCAAATTAAGAATAT s panTro1.chr19 20313025 31 - 82489036 ATAGGAACTTAATTCACCAAATTAAGAATAT s rn3.chr10 24738161 31 - 110733352 ATTGAAACTTGATTTATTAAATGGAGAATGT s canFam1.chr9 16585616 31 + 53642819 ATAGGAACataatttttaaaattaagaatat a score=3458.0 s hg17.chr17_random 859837 10 + 2618010 TTAGTTTTTG s panTro1.chr19 20313056 10 - 82489036 TTAGTTTTTG s mm5.chr11 24719284 10 - 121648857 TTTATTTCAG s rn3.chr10 24738212 10 - 110733352 TCAGCCTGGG s canFam1.chr9 16585647 10 + 53642819 ttaattttag a score=12317.0 s hg17.chr17_random 859847 59 + 2618010 TAG-------------------------------------------AGATTTTGCT----CTTGAAAATGT-------TGCAGTCTTGATTTCGTCTTGTCAGTCCAGTCAGA s panTro1.chr19 20313066 59 - 82489036 TAG-------------------------------------------AGATTTTGCT----CTTGAAAATGT-------TGCAGTCTTGATTTCGTCTTGTCAGTCCAGTCAGA s mm5.chr11 24719294 63 - 121648857 GAG-------------------------------------------ACATTTTGTTAAAGTTCCTAACTGT-------GGCAGTTGAGATTTGTTCTTTTCAATGTGCTCAGA s rn3.chr10 24738222 104 - 110733352 CAGTAGAGCCAGGTCTGTCTCACAAACGAGAACAGTCATTCATTTTAGACGTTGTTAGAGCTCTTAACTGC-------AGCACTGGGGATTTGTTCCTTTCAG--CACTCAGA s canFam1.chr9 16585972 63 + 53642819 TAG-------------------------------------------AGATTTGGGT----CTTAAAAATGTTAATTGCTGCAGTCTGGATTTTGTCTT---AGTCCAGTCAGA a score=91.0 s hg17.chr17_random 859905 1 + 2618010 A s danRer1.chr11 6185935 1 + 27258617 A a score=2012.0 s hg17.chr17_random 859906 4 + 2618010 ATTG s panTro1.chr19 20313125 4 - 82489036 ATTG s mm5.chr11 24719357 4 - 121648857 TTTG s rn3.chr10 24738326 4 - 110733352 TTTG s canFam1.chr9 16586035 4 + 53642819 TTTG s galGal2.chrUn 27907798 3 - 165033910 -ATT s danRer1.chr11 6185936 4 + 27258617 ACTG a score=172862.0 s hg17.chr17_random 859910 115 + 2618010 TGAAGTATTTTTTTTT----CTCATTCCAGAAATACATGCTACAGGATTTAACTATCAGAATGAAGATGAAAAAGTCACCTTGTCTTTCCCTAGTACTCTGCAAACAGGTAAG-AGACAT s panTro1.chr19 20313129 115 - 82489036 TGAAGTAATTTTTTTT----CTCATTCCAGAAATACATGCTACAGGATTTAACTATCAGAATGAAGATGAAAAAGTCACCTTGTCTTTCCCTAGTACTCTGCAAACAGGTAAG-AGACAT s mm5.chr11 24719361 111 - 121648857 TGAAATAATTTCTTCT--------TTCCAGAAATCCATGCGACAGGATTTAACTATCAGAATGAAGATGAGAAAGTCACCTTGTCTTTTCCTAGCACTCTGCAAACAGGTAAG-AAACAT s rn3.chr10 24738330 118 - 110733352 TGAAATAATTTTTCTC-TTCTTCTTTCCAGAAATCCATGCGACAGGATTTAACTATCAGAATGAAGATGAGAAAGTCACCTTGTCTTTTCCTAGTACTCTCCAAACAGGTAAG-AAGCGT s canFam1.chr9 16586039 117 + 53642819 TGAAGTAATGTTTTTTAATTTCCATTCCAGAAATACATGCTACAGGATTTAACTACCAGAATGAAGATGAAAAAGTCACTTTGTCTTTTCCTAGTACTCTCCAAACAGGTAAG---TCAT s galGal2.chrUn 27907801 115 - 165033910 TCAAACAAAATCTGTT----TCTCTTTCAGAGGTACATGCCACAGGGTTCAACTATCAAAATGAGGATGAGAAGGTTACCCTCTCCTTTCCCAGTACCCTTCAGAAAGGTAAG-AGGTAT s fr1.chrUn 199211506 111 - 349519338 TAATGTAATCTATTTT--------CCCCAGAAATAAATGCTACAGGTTTCAACTATCAGAATGAGGATGAGAAAGTCACCCTGTCGTTTCCAAGCACCCTGCAGAAAGGTCAG-GCAGCT s danRer1.chr11 6185940 116 + 27258617 --TGCTCATTTTCTCT--CCGTCCATTTAGAAATTAACGCTACGGGATTTAACTATCAGAACGAGGATGAGAAGGTGACCCTATGTTTTCCCAGCACTCTGCAAAAAGGTACTTAAGTGT a score=1056.0 s hg17.chr17_random 860025 42 + 2618010 AGCTTTTGTAAAATCTCGTGATGAATATAGTGACATCTGACT s panTro1.chr19 20313244 41 - 82489036 AGTTTTGGTAAA-TCTCGTGATGAATATAGTGACATCTGACT s mm5.chr11 24719472 39 - 121648857 GCCTTTTGTGAGATCCTATGAGGGAGAAAG---CAGCTTACT s rn3.chr10 24738448 39 - 110733352 ATCTTTTGTGAAATCCTATGAGAGAGAATG---CATTTTACT s canFam1.chr9 16586156 40 + 53642819 GGCTTTTGTAAAATTCCATGATGAATAGTG--ACATCTTATT s fr1.chrUn 199211618 42 - 349519338 TGCTCTCCGACGTCCTTGCTTTTCATACAGTCGTCTCTCACT s danRer1.chr11 6186056 40 + 27258617 -AACCTGCGAGACTCATGTCAACAATCTCAGTGTAATTAGT- a score=8164.0 s hg17.chr17_random 860067 36 + 2618010 TCCTCCAGAGAAAT----TTATTGTATGCCATTTTTTCCC s panTro1.chr19 20313285 36 - 82489036 TCCTCCAGAGAAAT----TTATTGTATGCCATTTTTTCCC s mm5.chr11 24719511 29 - 121648857 G-TTCCAAAGAAAT----------TATCCCATTTTTTCCA s rn3.chr10 24738487 29 - 110733352 G-TTCCAAAGGAAT----------CAGCTCATTTCTTCCA s canFam1.chr9 16586196 36 + 53642819 TCTTCCAGAGAAAT----TTGTCATATGCCAGTTTCTTTT s danRer1.chr11 6186096 38 + 27258617 --TGCTATAGTCAGTTTATTGTCGCATGAACTTGGCTTCA a score=9409.0 s hg17.chr17_random 860103 22 + 2618010 TCGTTGTTATTAGCAGATTAAG s panTro1.chr19 20313321 22 - 82489036 TCGTTGTTATTAGCAGATTAAG s mm5.chr11 24719540 22 - 121648857 CTATTATTGCATGCAGATTAAA s rn3.chr10 24738516 22 - 110733352 CTGTTATTGCTTACAGATTAAA s canFam1.chr9 16586232 21 + 53642819 TC-TCGTTTTAAGCAGATTAAG a score=909.0 s hg17.chr17_random 860125 8 + 2618010 TATTAAGA s panTro1.chr19 20313343 6 - 82489036 TATTAA-- s canFam1.chr9 16586253 8 + 53642819 TATTAAGA a score=26420.0 s hg17.chr17_random 860133 304 + 2618010 GCttttttttttttttactttgagacggagtcttactctattgcccaggctggagagtagtggcatgatcttggctcactacaacctccaccttccaggttcgagtgattctcctgcctcggcctcccgagtagctgggattacaggtgcctaccaccacaccggctaatttttttgtatttttagtagagacaaggtttcgccatgttggccaggctggtcttgaactcctgatctcaagcgatctgcccgccctggcctcccaaagtggtaggattacaggcaggagccaccacgcccagct s panTro1.chr19 20313349 289 - 82489036 ---------------TCCtttgaggcggagtcttactctattgcccaggctggagagtagtggcgtgatcttggctcactacaacctccaccttccaggttcgagcgattctcctgcctcggcctcccgagtagctgggattacaggtgcctaccaccacaccggctaatttttttgtatttttagtagagacaaggtttcgccatgttggccaggctggtcttgaactcctgatctcaagtgatctgcccgccctggcctcccaaagtggtaggattacaggcaggagccaccgcgcccagct a score=1406.0 s hg17.chr17_random 860437 5 + 2618010 GTATT s panTro1.chr19 20313638 5 - 82489036 GTATT s mm5.chr11 24719562 5 - 121648857 ACGTT s rn3.chr10 24738538 5 - 110733352 ATGTT a score=41266.0 s hg17.chr17_random 860442 212 + 2618010 AAGAGCTTTTT-AAAGAGGTTTGTTGCAACTTTTGGGCCACCAGCATTTCCTTCTGCGGAAGTTGGGCTACGAAAAGCAGGGTTTCCACCTCCTGTCAC-TCTATATTCTCTTTAAACAAACAAGCCAAGAAAAACAGGACAAAAACTAAAGATCATTCTATCCTAGAATGTAATGTATTGTTTTCCAGTTTTAC--------CTTTTTAAAAATACCTTTA s panTro1.chr19 20313643 212 - 82489036 AAGAGCTTTTT-AAAGAGGTTTGTTGCAACTTTTGGGCCACCAGCATTTCCTTCTGTGGAAGTTGGGCTACGAAAAGCAGGGTTTCCACCTCCTGTCAC-TCTATATTCTTTTTAAACAAACAAGCCAAGAAAAACAGGACAAAAACTAAAGATCATTCTATCCTAGAATGTAATGTATTGTTTTCCAGTTTTAC--------CTTTTTAAAAATACCTTTA s mm5.chr11 24719567 164 - 121648857 AAGAGCTTTTC-----------------------------------TTTCCCCTTAAAAATTCTGAATTATGAAAATAAACATTTCAAATTTCTTTGTC-TTTGTGTTTTACTTAAAC----------AGAAAACTATG--AAAAACTACAGATTATT-TGCTATAGAATAAGATGTATAGCTTTCAGGTTCTG---------TTTGTTAACAATCCATGTA s rn3.chr10 24738543 165 - 110733352 AAGAGCTTTTC-----------------------------------TTCCCCCTTAAACATTCTGAATTTTGAGAATAAAAGTTTCAAATTTTTTTGTCTTTTGTGTTTTACTTAAAC----------AGAAAACTATG--AAAAACTAAAGATTGTT-TGCTATATAATAAGATGTATAGCCTTCAGTTTCTG---------TTTGTTAAAAATACATTTC s canFam1.chr9 16586261 138 + 53642819 CAAAGCTTTTTGAAAGAGGTTCATTGCAGCTTTTGGGGCACCAG------------------------------------------------------------------------------------GAAAAAAGAAGACCAAAACTAATAATCATTCTACCCTGGAACATAATACATTGTTTTTTACTTTTTCAGTCTCAGCTTTTTAAAAATACAGTGA a score=1505.0 s hg17.chr17_random 860654 5 + 2618010 CCTAg s panTro1.chr19 20313855 5 - 82489036 CCTAg s rn3.chr10 24738708 2 - 110733352 ---AG s canFam1.chr9 16586399 5 + 53642819 CCCAG a score=27589.0 s hg17.chr17_random 860659 297 + 2618010 gccaggcgtggtggctcacacctgcaatcctagcgctttgggaggccaaggcgggctgatcacttgaagccaggagttagggaccagcctggccaacatggcaaaaccccatctctaccaaaaaatacaaaaattacccagtgtggtggctcatccctatactcccagctactcagaaggctgaggcaagaaaatcgccagaagtcaggaagtggaggttgcagtgaaccgagatcatgccactgcactccagcctgggtgatagagtgggactctgtctaaaacaaacaaacaaaa s panTro1.chr19 20313860 297 - 82489036 gccgggcatggtggctcacacctgcaatcctagcgctttgggaggccaaggcgggctgatcacttgaagccaggagttagggaccagcctggccaacatggcaaaaccccatctctaccaaaaaatacaaaaattacccagtgtggtggctcatccctataatcccagctactcagaaggctgaggcaagaaaatcgccagaagccaggaagtggaggttgcagtgaaccgagatcgtgccactgcactccagcctgggtgatagagtgggactctgtctaaaacaaacgaacaaaa a score=546.0 s hg17.chr17_random 860956 2 + 2618010 TA s panTro1.chr19 20314157 2 - 82489036 TA s canFam1.chr9 16586404 2 + 53642819 TA a score=0.0 s hg17.chr17_random 860958 10 + 2618010 CTTTTACCTA a score=533.0 s hg17.chr17_random 860958 7 + 2618010 CTTTTAC s panTro1.chr19 20314159 7 - 82489036 CCTTTAC a score=573.0 s hg17.chr17_random 860965 2 + 2618010 CT s panTro1.chr19 20314166 2 - 82489036 CT s rn3.chr10 24738713 2 - 110733352 CT a score=273.0 s hg17.chr17_random 860967 1 + 2618010 A s panTro1.chr19 20314168 1 - 82489036 A s mm5.chr11 24719731 1 - 121648857 A a score=51144.0 s hg17.chr17_random 860968 142 + 2618010 GCTCCATCTTCTATTAATTC--AATCCAAATCCCTGAAGTGAATG-GTCACAGATGATTTTGATATACAACCAGAGATCAAATAGGTATTGTGTTATTGAGGGCACAGAAAGAAAGATACGTTGAT---ATGTTACTATTGTTAGGTA s panTro1.chr19 20314169 142 - 82489036 GCTCCATCTTCTATTAATTG--AATCCAAATCCCTGAAGTGAATG-GTCACAGATGATTTTGATATACAACCAGAGATCAAATAGGTATTGTGTTATTGAGGGCACAGAAAGAAAGATACGTTGAT---ATGTTACTATTGTTAGGTA s mm5.chr11 24719732 144 - 121648857 GCCGCTCCCTCCGCCGGGTGCTGACCGAGCTCTCTGAGGACAGGG-TTTCCCTAGCATTCCGGTGTATGACCAGAA---CAAGAGAAGTTTTACTAGTGACAGCATCGAAAGGAAGATTTATTGCTATGATGTTACTATTATTTGACA s rn3.chr10 24738715 139 - 110733352 ------CCCTCCATCTGATGCTGATTGAAATCTCTGAGGAGAATGTTTCACATAGCATTTTAGTGTACAACCAGAA---CAAGAGAAATTTTACTAGTGAGAGCACAGAAAGGAAGATTTGTTAGTATGATGTTACTATTACTTGACA s canFam1.chr9 16586406 129 + 53642819 ACTCCATCTTCCAGTTATTG--AGTCCACATCTCTGAGATGAATGTCCCACAGATGATTTTGATGTATAA---------AAAT-----TTATGCTAGTGAGGACATGGAAGGAAAGATTTGTTGAT---ATGATACTATTATTAGGTA a score=45692.0 s hg17.chr17_random 861110 112 + 2618010 TAAAAGCACAAAGA----AATAGACTTTCTGAGCTTAGTATATGTGGAAGAAATTATATACCAATCAATTGGTGAAGTACTAAGACTTTGATGaatgaacaaatga--aaaggaacag s panTro1.chr19 20314311 112 - 82489036 TAAAAGCACAAAGA----AATAGACTTTCTGAGTTTAGTATATGTGGAAGAAATTATATACCAATCAGTTGGTGAAGTACTAAGACTTTGATGaatgaacaaatga--aaaggaacag s mm5.chr11 24719876 107 - 121648857 TAAAAGCACAAAGAATATAGAAGACCTTTTGAGCTTAATATA----GAAGAAATTATCC-----TCAATCAGGAAAGCTCTAGGAATTTGGTAA--GAGTGGATGATGAAAGAAACGG s rn3.chr10 24738854 88 - 110733352 TAAAAGTACAAAGA-----------------------ATATA----GAAGAAATTATCCCCAAATCAATTAGGAAAGCTCTAGAAATTTGATAAATAAGTAGATG---AAGGAAAAGG s canFam1.chr9 16586700 112 + 53642819 TAAAAACACAAAGA---AAAAAGACTTTCTGAGCTTAATGTA-GTGTAAGAAATTATATACAAATCAATTAGTAAAGCACTAAGACTTTTATTAGTGATCAATTGA--AAAGCAACAG a score=16861.0 s hg17.chr17_random 861222 75 + 2618010 ataattcaaaaggaagaaaatgtaaatgactaataaacatgcgaaaagatattgagcctcctagtaatgagaaa------------------------------------------------t s panTro1.chr19 20314423 75 - 82489036 ataattcaaaaggaagaaaatgtaaatgactaataaacatgtgaaaagatattgagcctcctagtaatgagaaa------------------------------------------------t s mm5.chr11 24719983 104 - 121648857 AGAGACCGCACAGA--AACATGTAAATAACTATTATATGTGTG-AAAGAGATTTAGCTTCCTAGTAATCAGAAATATAAAAA----------------TAAGTTACTATCGTTCTAAACAGGT s rn3.chr10 24738942 94 - 110733352 AGAGATCATACAGAA-AAAGTATAAATAACTT------------AAATGTATTTAGTTTCCTAGTAATCAGAGATATCAAAATAAGTTACTATAATACTAAACCAG----------------T s canFam1.chr9 16586943 73 + 53642819 ATAATTTGTATGAAAGAAAACGCAAATGA--AGGAAACATGTGAAAAGATACTTGGCTTCCTAGTAATGAGAAAT------------------------------------------------ a score=16085.0 s hg17.chr17_random 861297 27 + 2618010 TTTTGCTTCTCATGTGAGCTGAAATTT s panTro1.chr19 20314498 27 - 82489036 ttttgcttctcatgtgagctgaaattt s mm5.chr11 24720087 27 - 121648857 TTTTTCTTGTCAAGTAAACTAAAGTTT s rn3.chr10 24739036 27 - 110733352 TTTTTCTTGTCATGTAAACTGAAGTTT s canFam1.chr9 16587257 27 + 53642819 TTTTGCCTGTTCTGTAAGCTAAAGTTA a score=6901.0 s hg17.chr17_random 861324 13 + 2618010 --TAAAAATTCCCAA s panTro1.chr19 20314525 13 - 82489036 --taaaaattcccaa s mm5.chr11 24720114 13 - 121648857 --AAAAAATTCTCAA s rn3.chr10 24739315 13 - 110733352 --AAAAGATTCTTGA s canFam1.chr9 16587284 15 + 53642819 AAAAATGATTCTTAA a score=119694.0 s hg17.chr17_random 861337 341 + 2618010 TGATATGGC----------------------------------TGCCTTGatatcgctggggggagtataaatccatgtaatttttttgtaaagcattctgg-----------cagta--tatc-aagagcctaaatatgttcatgtcctttgacccagcaatt-ctgcta-----ataggaatatatcccaaggaaaagtcataaatacagaaaatactttatgcccagaagtgt-----ctgagatattacttacggtagtaaa-aaattataattaatatatttgttcaacactaaggaaatgatcaagccaggaatgatatatctatatagtgaa---atatacttagcaattaaaagtgaggtttgcgaattc---ttaaccctgtaaagtgcttattataa s panTro1.chr19 20314538 341 - 82489036 tgatatggc----------------------------------tgccttgatatcgctggggggagtataaatccatgtaatttttttgaaaagcattctgg-----------cagta--tatc-aagagcctaaatatgttcatgtcctttgacccagcaatt-ctgcta-----ataggaatatatcccaaggaaaagtcataaatacagaaaatactttatgcccagaagtgt-----ctgagatattacttatggtagtaaa-aaattataattaatatatttgttcaacactaaggaaatgatcaagccaggaatgatatatctatatagtgaa---atatacttagcaattaaaagtgaggtttgtgaattc---ttaaccctgtaaagtgcttattataa s mm5.chr11 24720255 350 - 121648857 TGAAATAACACTTAAATGAAAAAGATTCTTGAAAATAAACAAATGTCTCTGCAATACTAGTTAGAG-ATAAACCCATGTAAATACTTTGAAAACCAGCTTGT-----------TAAAA--AAAAGAAGAAGAAAAATA-------GCTCTT---ACCACCAGTT-CTGTT------ATAGGAATATATTCTAAGGAAAAGTCATAA----CAAAAGTATTTTATAGCTAAAAGAATATTTATTGAGACATTTCACGTGTTGGTGAATGAATTAGAACTAATATATTTGTTCAACAC--AGAGATTGATT---------TTGACACATTCGTATAGTGAG---GTGTATTTAACAGT--------AAGTTCATGATTTCTTTTTAACATAATAAAGTACTAATTATAA s rn3.chr10 24739328 328 - 110733352 TAATA-AAC-------------------------------AAATGTCTCTGTAT-ACTACTTAGAG-ATAAATCCATGTAAATACTTTGAAAACCAGCTTGTCCAACAAAAAACAGAA--AAGA-AAAGGAAGAAAAA----------------ACCAGCTGTCACTGTTATGAATATATGAAGATACTCTAAGAAAAAGTCATAA----CAAAAGTATTTTATACCTAAAAGAGTATTTATCAAGACATTTCATGTGTTGGTGAAAGAATTAGAATTAATATATTTGTCCAACAC--TGAGATTCATT---------TTGACACATTAGTATAGCAAA---GTGTATTTAACAAT--------AAGTTTATAAATTCTTTTTAACATAATAAAGTACTAATTATAA s canFam1.chr9 16587299 347 + 53642819 TGATGTGAC----------------------------------TACCTTGatattattggtgggaatgtaaatctatgcaatgtatttggaaggcaatctgg-----------caatatgtatc-aaaagcctaaacatgtccatgtcttttgacccagtaatt-ctggag-----ataggaatatgtcctaaggaaaaatcataaatgcaggaaatactttatgcctggaaatgt--ctattgagacattacttaaggtagtaaa-aaattagagtgaatgtatttgtccaacactaagggagtaattaagctaa--ttatgatatcagtatggtggaaatatatatatagtaattaaaagtgagctttatgagttc---ttaacactgtgaagtatttattataa a score=573.0 s hg17.chr17_random 861678 2 + 2618010 tg s panTro1.chr19 20314879 2 - 82489036 tg s canFam1.chr9 16587646 2 + 53642819 tg a score=191.0 s hg17.chr17_random 861678 2 + 2618010 tg s canFam1.chr9 16587646 2 + 53642819 tg a score=19125.0 s hg17.chr17_random 861680 68 + 2618010 taaaattgaaaagaagaatataaaattacatatTTAAGGTGGTGAATCATGTCTCT-AAATGGCACAAA s panTro1.chr19 20314881 68 - 82489036 taaaattgaaaagaagaatataaaattacatatTTAAGGTGGTGAATCATGTCTCT-AAATGGCACAAA s rn3.chr10 24739656 66 - 110733352 CACACTT---AAAAAGTATATGCGTGCACATATTCAAGTTGATGGATCATATGTTTAAAATAGTACAGG s canFam1.chr9 16587648 69 + 53642819 taaacttgaaaagcagaatacaaaattatatatacagggtgatGAATCATACCTCTAAAATGATATGAA a score=35888.0 s hg17.chr17_random 861748 207 + 2618010 TAAAATGATAATTATGTCTGGGTGTTGACATAATTGGTGATTTTTATTCTTATTTATATCTTTTGTCTGATTTTCACAATTTTCCTACTGAGAATCTATTGaattaatataaaattatttttag-aaaaaatttaaattGGAGATGTTTAGTCTTTTATTTCAGTGC--TCTTGG-------------AGGCCCTTTATGTGTAATTATTATAAAAATAAATG s panTro1.chr19 20314949 211 - 82489036 TAAAATGATAATTATGTCTGGGTGTTGACATAATTGGTGATTTTTATTCTTATTTACATCTTTTGTCTGATTTTCACAATTTTCCTACTGAGAATCtatttaattaatataaaactatttttag-aaaaaatttaaattGGAGACATTTAGTCTTTTATTTCAGTGC--TCTTGGTT---------GGAGGCCCTTTATGTGTAATTATTATAAAAATAAATG s canFam1.chr9 16587717 209 + 53642819 -----TAATA--TATGTCTGGTTGTTGACATAATTGATTATTTTTG---TTATTTATATCTTTT-TTTAGTTTTCATAATTTTTATACTGATAATATATTGCCTTAATATAGTAGTATTTTTAGAAAAAAATTTTGATTGGAG---TTTAATCTTTTATTTCAGTGCCTTTTTGCCTTTTTCTGACTAGGATTTCTTATATGAAATTATTATAAAAATAAATG a score=29605.0 s hg17.chr17_random 861955 311 + 2618010 ggccgggcgtagtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctgactaacacggtgaaaccctgtctctactaaaaatacaaaaaattagctgggaatggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcaccactgcactccagcctgggtggcagagtgagactccgtcccaaaaaacaaaacaaaacaaaacaaaaAATG s panTro1.chr19 20315160 311 - 82489036 ggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctgactaacacggtgaaaccctgtctctactaaaaatacaaaaaattagctgggaatggtggcaggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgcaccactgcactccagcctgggcggcagagtgagactccgtcccaaaaaacaaaacaaaacaaaacaaaaAATG a score=44630.0 s hg17.chr17_random 862266 260 + 2618010 CTTTGCCATGAACATGTATTAAAAGCTATTGAAGAATATAATTTGAAAAGGAAGGAGATTCTTTCGCTGATTTCTTCTACTTCCATTGTCTGGTGAATCTGTCTAGAAATATTCCTATGtatat-ataaatttatgtatataatttaaCCCACAGATAGGATCACAAATCTCAGTGGCTTATAACCACTGAGATTTCTTTCTTTTTTACACATGGGCCATGAGGACTGCTGATCATATGCAGCCATATC-------ACCAACTCTGCT s panTro1.chr19 20315471 260 - 82489036 CTTTGCCATGAACATGTATTAAAAGCTATTGAAGAATATAATTTGAAAAGGAAGGAGATTCTTTCGCTGATTTCTTCTACTTCCATTGTCTGGTGAATCTGTCTAGAAATATTCCTATGtatat-ataaatttatgtatataatttaaCCCACAAATAGGATCACAAATCTCAGTGGCTTATAACCACTGAGATTTCTTTCTTTTTTACACATGGGCCATGAGGACTGCTGATCATATGCAGCCATATC-------ACCAACTCTACT s canFam1.chr9 16587926 244 + 53642819 TTTTGCTATGAGTATGTATTAAAAGATACCAAAGAATAGATCATAAAAATTAAGA------TTTCTCT-ACTCCTGCCACTTCCATTGTCTTGTGAATCCTTCCAGAAATATT-CTATGTATATAATAAATATATGTGTGCATTTTAATCCACAAATGGGATCACATATCTCAGTGGCTTACAACAAATA-------TTTCTTGCTTACACCT-GGCACTGAGGACTGC--------TGCAGGCATACCTTTGCCTAAGAACTCTGCT a score=25729.0 s hg17.chr17_random 862526 140 + 2618010 GGCTCCACTTGGCTCCCAAC---TGTCTTTCCAGGACTAGTAGTCAGCGAGCAGCCACTCTCTGTATCAT-----------GCATGGCAGAGGGCAGAGGCTCAGGGATGGGGAGAAAGCTAGACCACAAAGACACATTTAAAACTTCTGCATg s panTro1.chr19 20315731 140 - 82489036 GGCTCCACTTGGCTCCCAAC---TGTCTTTCCAGGACTAGTAGTCAGCGAGCAGCCACTCTCTGTATCAT-----------GCATGGCAGAGGGCAGAGGCTCAGGGATGGGGAGAAAGCTAGACCACAAAGACACATTTAAAACTTCTGCATg s canFam1.chr9 16588368 149 + 53642819 AACTCTgctcagctcacaactcttctcattccaggacctgtagt----gagcagctactatctacagcatactgttctctcacatagcagaggacagaagctcagggatgggttcagagaca-accacaaagatacatttaaggcttctgcatg a score=14131.0 s hg17.chr17_random 862666 150 + 2618010 gccaggcgtggtgactcacacctgtaatcccagcatttttggaggctgaggcaggaggattgcttgagcccaggagttcgagaccagcctaggcaatgtagtgagaccctgtctctataaaaaataaaataaaaaataaaaTttctgtgt s panTro1.chr19 20315871 150 - 82489036 gccaggcgtggtgactcacacctgtaatcccagcatttttggaggctgaggcaggaggattgcttgagcccaggagttcgagaccagcctaggcaatgtagtgagaccctgtctctataaaaaataaaataaaaaataaaaTTTCTGTAT a score=50214.0 s hg17.chr17_random 862816 280 + 2618010 gatggtggtatacttgatgtctactcacatttcattgaccaaagcaagtagcatgaccaagcccaaagtcactggggTAGCATTTAAcagacatttgcgaa---------aagtttcta--atgaaagatagggcaaaaagcaaaattataagtataatagaaataaaggaagttggaaaaagcaaagacaaatctaaagaaagttaaaaaaaaaacaaacc--catagctaattactatccttagaga----gttaagagaaagcattgcgtgcattaaacaaggacaggacagaa s panTro1.chr19 20316021 280 - 82489036 GATGGTGGTGTACTTGATGtctactcacatttcattgaccaaagcaagtagcatgaccaagcccaaagtcactggggtagCATTTAAcagacatttgcaaa---------aagtttcta--atgaaagatagggcaaaaagcaaaattataagtataatagaaataaaggaagttggaaaaagcaaagacaaatctaaagaaagttaaaaaaaaaaaaaacc--caaagctaattactatccttagaga----gttaagagaaagcattgcgtgcattaaacaaggacaggacagaa s canFam1.chr9 16588517 283 + 53642819 gatggtggtatacttgatatccattcacatttcactggccaaagcaaattgtatggccaaa-ccAAAGTCACTAGGGTAACAATTAccagatattaccagatatttgattaaacttctactgtgaaagatagagtaaaaagccaaac------agtaataaagatataggaacttgttagaagtaaagacaaatggaaagaaagtgtcaaaaaataaaaacccacaaaacaaattaatatccttaaagatattgtcaa-------tatcacattcattaaacaagaacaggaCAGCg a score=46551.0 s hg17.chr17_random 863096 508 + 2618010 tgccatcagataggaagaattacagcaggaaaa-cttggaaattatgataggtataaaaaacccagtaaaagtgttaaagatgaagttgaggaaacttccaagcagtagaaaaaacagatagaaaacagaaaaatagatttgagaaccagtccagcagaaccaacatccatctagtaaaacagaaagcagaggaaatgggaagaggattttttaattttcatttttgcaacagaatcttgctctgtcacccaggctggagtgcagtggtgcaatctcggctcaccacagcctccacctcgtgggttccagtgattctcctgcctcagcctcctgggtagctgagattacaggcacacaccaccacgcccagctgatttttgtatttttagtagagttggggtttcaccatgttggccaggctggtctcgaactccggaccttaggtgatgtgcccacttcggcctctcaaagtgctagggattacaggcgtgtgccactgtgcccggcc s panTro1.chr19 20316301 508 - 82489036 tgccatcagataggaagaattacagcaggaaaaacttggaaattatgataggtataaaaaacccagtaaaagtgttaaagatgaagttgaggaaacttctaagcagtagaaaaaacagatagaaaacagaaaaatagatttgagaaccagtccagcagaaccaacatccatctagtaaaacagaaagcagagaaaatgggaagaggattttttaattttcatttttgcaacagaatcttgctctgtcacccaggctggagtgcagtggtgcaatctcggctcaccacagcctccacctcgtgggttccagtgattctcctgcctcagcctcctgggtagctgagattacaggcacacaccacctcgcccagctgatttttgtatttttagtagagttggggtttcaccatgttggccaggctggtctcgaactctggaccttaggtgatctgcccacttcggcctctcaaagtgctagg-attacaggcgtgtgccactgtgcccggcc a score=2793.0 s hg17.chr17_random 863604 24 + 2618010 agaagagaaactcaaaaagacagg------- s panTro1.chr19 20316809 24 - 82489036 agaagagaaactcaaaaagacagg------- s mm5.chr11 24720869 31 - 121648857 TTAAAAAAAAATTAAAAAGAGAAGAAATTTA a score=44349.0 s hg17.chr17_random 863628 190 + 2618010 aacatttccttgaactgatagagcaggagccttcagtttgcaaaggtacaccattgagagagactagcttaaaaaatgt-----aaaaattgccacactgactgaaattttagaacttctgcgataaagtaaaactcccagaaagttcctgtctgggatagggggcaataggagggaaggcaggtagcatactac s panTro1.chr19 20316833 190 - 82489036 aacatttccttgaactgatagagcaggagccttcagtttgcaaaggtacaccattgagagagactagcttaaaaaatgt-----aaaaattgccacactgactgaaattttagaacttttgcgataaagtaaaactcccagaaagttcctgtctgggatagggggcaataggagggaaggcaggtagcatactac s mm5.chr11 24720900 172 - 121648857 AAAATCTCTTTGAATTA--AACACAGGAGCTTTTAGTTTACAAAATATTTCTTTGGCGAGAGGGAGATTGAGAAAATAT-----AACAAATTGCATCCCAAAGCAGATTTTAGTGCCTTGGGAATAAAGTGAAGCTTTGAGAGAATTTCT-TTTGGGGT--------------GGGATGGAAGCTGGTATG-TAC s rn3.chr10 24739892 177 - 110733352 AATAACTCTTTGAGTTA--AACACAGGAGCTTTTAGTTTATAAAATATTTCTTTGGAGAGAGATTGATTGAGAAAATATTAAAAAAAAAATTGCATCCCAAAGCAGATTTTAGTGCCTTAGGAATAAAGTGAAGCTTTAAGAGAATTTCT-GTTGGGAT--------------GGGATGGAGGCTGGCACA-TGC a score=9764.0 s hg17.chr17_random 863818 24 + 2618010 ctttaaaatttaggaatcagaata s panTro1.chr19 20317023 24 - 82489036 ctttaaaatttaggaatcagaata s mm5.chr11 24721072 24 - 121648857 CTTCAGAGCTTAAGGGTCAGATTA s rn3.chr10 24740069 24 - 110733352 CGTCAAAGTTTAGGAATCAGATTA s canFam1.chr9 16589560 24 + 53642819 CTTGAATGAATAAAAAAAGgaaca a score=4091.0 s hg17.chr17_random 863842 12 + 2618010 gtcctagactta s panTro1.chr19 20317047 12 - 82489036 gtcctagactta s mm5.chr11 24721581 11 - 121648857 ACTCTAGACTT- s rn3.chr10 24740093 12 - 110733352 GCACTAGACTTG s canFam1.chr9 16589584 12 + 53642819 acagtagactaa a score=43529.0 s hg17.chr17_random 863854 107 + 2618010 ccattaggaacagtggaaacttagactctaatgaag-ctgttcattcaaaatacaaa-gtgaatctgattttcaacc-taa----gattgcatgcttagcccaactttgaattt s panTro1.chr19 20317059 109 - 82489036 ccattaggaacagtggaaacttagactctaatgaag-ctgttcattcaaaatacaaaagtgaatctgattttcaaccgtga----gattgcatgcttagcccaactttgaattt s mm5.chr11 24721592 105 - 121648857 TTATTAGGAACAATGGAAAC-TATCCTCT-CTCAGA-TTACTTGTTTAAAATACTAG-GTGAATCTGATTTTCAACT-TAG----AAGTCTGTATGTAGTCAAACCATGAATTT s rn3.chr10 24740309 99 - 110733352 TCCTTAGGAACAATGGAAAC------TATAATAAA---TGATTGTTTAAAATACTAG-GTGACTCTAATTTTCAACT-TGG----AATTCTGTATTTAGTCAAACCATGAATTT s canFam1.chr9 16589596 111 + 53642819 ccatcaggaacaatggaaat-tagactctaatgaaatccattcctttaaaattatga-gtgtatatgatttttaacc-tagaattaattctatgcttagccaaatgataaattt a score=24357.0 s hg17.chr17_random 863961 127 + 2618010 cggagtaaaaatattttcagatttgcaaggtcatagaaaatttGATTCTTT-GTAAAAGATATTGGAG-TGGGGG--ATGGATTAGCTAAAGCATGACTTTCTACAGTGAAGAGAAAATGTCTAAAGTTGa s panTro1.chr19 20317168 129 - 82489036 cggagtaaaaatattttcagatttgcaaggtcatagaaaatttGATTCTTTTGTAAAAGATATTGGAGGTGGGGG--ATGGATTAGCTAAAGCATGACTTTCTACAGTGAAGAGAAAATGTCTAAAGTGGa s canFam1.chr9 16589715 129 + 53642819 taaaagaaagatatcttcatatttgcaaggttacagaaaatttaattcTTT-GTAAAAGATGTAGGAG-TGGGAGATATAGTTTGActaaaacttcactttctgtaataagaagaaaatgtgtaaagttga a score=16003.0 s hg17.chr17_random 864088 176 + 2618010 aaaatgaagaaataggccgtggtcgtggctcatgcctgtaatcccaacactttgggaggctgaggtgggaggattgcttgcccaggaattgaaggctgcagtgagccgtgattgtaccactgccctcgagcctgggcgacaga-gcaagactgtctcaaagaaaggaaaagaaaaaa s panTro1.chr19 20317297 177 - 82489036 aaaatgaagaaataggctgtggtcgtggctcatgcctgtaatcccaacactttgggaggctgaggtgggaggattgcttgcccaggaattgaaggctgcagtgaaccatgattgtaccactgccctcgagcctgggcgacagatgcaagactgtctcaaagaaaggaaaagaaaaaa a score=726.0 s hg17.chr17_random 864264 2 + 2618010 TA s panTro1.chr19 20317474 2 - 82489036 TA s rn3.chr10 24740556 2 - 110733352 CA s canFam1.chr9 16589856 2 + 53642819 ta a score=37222.0 s hg17.chr17_random 864266 155 + 2618010 GCTGTGTAAGCAAGACATTTAGAAGTCACAGAGTTTGAA---------ATTGATTGCTTCTAGGGG---CAGGGTGTGGGGAGTAGGGCC---TAGTGTTGAGCA-GGGCCTGGAGCTTACGTA------------------------TTTTAAACTGTGAACTATTACTTTGATAGAAATTTAAAAAA--TTTTAG- s panTro1.chr19 20317476 158 - 82489036 GCTGTGTAAGCAAGACATTTAGAAGTCACAGAGTTTGAA---------ATTGATTGCTTCTAGGGGGGGCAGGGTGTGGGGAGTAGGGCC---TAGTGTTGAGCA-GGGCCTGAAGCTTACGTA------------------------TTTTAAACTATGAACTATTACTTTGATAGAAATTTAAAAAA--TTTTAG- s mm5.chr11 24722046 169 - 121648857 GTTATATCAGGAAG-TGTTTAGAAAT--GAGAGTTAAAACCATTGGCTGCTGGATGCTTATGGAGAGTTAAGGGCACATTGGCTAGGACTCCATAGTTTATAGGT-AAGCCTGGGGCTACTGTATC--------------------AGTTTAAAAATATGAACTGTTA-GTTGATA-AAACCAGAGTAA--TTTTAG- s rn3.chr10 24740558 160 - 110733352 GTTATATAAGCAAG-TGTTTAGAAAT--GAGAGTTAAAACCATTGGCTGCTGGGTGCTTTTGGAGAGTTAAGGGCACACTGGCTAG---------GTTTATAGAT-AAGCCTGGGGCTATTGTATC--------------------AGTTTAAAACTACGAACTGTTA-GTTGATA-AAACTAGAGTAA--TTTTAG- s canFam1.chr9 16589858 167 + 53642819 agtatataagcaaagtatttagaaatCACAGAGT--------------------TGCTGCTGGTGC------GGTGTGAGGAGTAGGA-----TAGCATTGGTCAGGGGCCTACAGCTTATATATAAACCTTTATACTACCTTGTGAGTTTTAAAATACGAACTATTACTTTAATAGaaataagataaaatttttaaa a score=570.0 s hg17.chr17_random 864421 3 + 2618010 AGT s panTro1.chr19 20317634 3 - 82489036 AGT s rn3.chr10 24740718 2 - 110733352 -GC s canFam1.chr9 16590025 3 + 53642819 aat a score=-283.0 s hg17.chr17_random 864424 3 + 2618010 TTT- s panTro1.chr19 20317637 3 - 82489036 TTT- s canFam1.chr9 16590028 3 + 53642819 -tta a score=6972.0 s hg17.chr17_random 864427 24 + 2618010 AAATCTATATCATTACAGACTATA s panTro1.chr19 20317640 24 - 82489036 AAATCTGTATCATTACAGACTATA s mm5.chr11 24722604 21 - 121648857 AAGTATATATCATTAAGGGAC--- s canFam1.chr9 16590031 24 + 53642819 aaatctgtatcattacagactgta a score=11055.0 s hg17.chr17_random 864451 32 + 2618010 tatattctgtgtttacactgtga----aaaaattag s panTro1.chr19 20317664 32 - 82489036 tatattctttgtttacactgtga----aaaaattag s mm5.chr11 24722625 32 - 121648857 TGTATTCTCAGTTGATGCTGTGA----CAGTGTAAG s rn3.chr10 24741105 36 - 110733352 TATATTCTCTGTTGCTACTGTGACGTTAGAAATCAA s canFam1.chr9 16590055 28 + 53642819 ----ttatgtgataatgctatga----gaagattaa a score=2935.0 s hg17.chr17_random 864483 13 + 2618010 aagtcaatagaaa s panTro1.chr19 20317696 13 - 82489036 aagtcaatagaaa s mm5.chr11 24722657 13 - 121648857 AAATTAATAGCAG s rn3.chr10 24741267 13 - 110733352 AAACCAATAACAA s canFam1.chr9 16590083 9 + 53642819 -aatctgcaa--- a score=27028.0 s hg17.chr17_random 864496 88 + 2618010 aagagaaatgaaaaaa-atccctttttata-----tatttgaaaaaatt----atacctctgaataattgagtcaaagaagacttgttatggaaatta s panTro1.chr19 20317709 87 - 82489036 aagagaaatgaaaaaa--tccctttttata-----tatttggaaaaatt----atatctctgaataattgagtcaaagaagatttcttatggaaatta s mm5.chr11 24722810 92 - 121648857 AAAACCAATAACAACA-ACCCCTCTCCCCAAAAGTTGCACAAAAAAATTTCACATATTTAT-AATAATTGAGTCAAA----ACTTGTTAGGAAAGTTA s rn3.chr10 24741297 68 - 110733352 AAAAATAGCACAAAAA-TTTCTTTTTCACA-----TATTTAA--------------------AATAATTGAGTCAAA----ACTTGTTAGGAAAGTTA s canFam1.chr9 16590092 89 + 53642819 aagagaaacaaaaaaaaattcctcctcata-----tatttgggaaaatt----atacctctgaaaattaatgtcaaagaagatcttttatggaaatta a score=3429.0 s hg17.chr17_random 864584 12 + 2618010 g------aaaatatttag s panTro1.chr19 20317796 12 - 82489036 g------aaaatatttag s mm5.chr11 24722902 18 - 121648857 AGTTGGCAGAATACTTGG s canFam1.chr9 16590181 12 + 53642819 g------aaaatatttag a score=64819.0 s hg17.chr17_random 864596 437 + 2618010 aactgaataatgaaattaccacatatgaaacattagggataaacatgtttcatatgcagataaaata--ttaga----atatttagttaagaagaaagactgaaaattaattagctaagcattaaactc--------ataaaaacaaaaggtaacttggagaaagtagaag--------aaagttttaagagcagaaacaaatgaaataAGTGAAGTGAGGGGC-AGAAATATTAAAAAACTGATATTTAAAAATAGTCCCAAAAGATATATAAACCTAGCCAGTATA-------GAAAATAAAAGC-GTAGATTGAATTGTTGTTCAGCATTAGGAAATATGGTAACCATTTTTCAT-TAAATTTAAAAAGTTAAACATTCTATATTTATCAAAAGGAATCAG--TTTATTTGCTAGAATTCACCAGGGAAGAGTAGACAGAAACTTCTAACATGATAGAAGATATGTAT-- s panTro1.chr19 20317808 438 - 82489036 aactgaataatgaaattaccacatatgaaacattagggatAAACGTGTTTCATATGCAGATAAAATA--TGAGG----ATATTTAGTTAAGGAGAAAGACTGAAAATTAATTAGCTAAGCATTAAACTC--------ATAAAAACAAAAGGTAACTTGGAGAAAGTAGAAG--------AAAGTTTTAAGAGCAGAAACAAATGAAATAAGTGAAGTGAGGGGC-AGAAATATTAAAAAACTGATATTTAAAAATAGTCCCAAAAGATATATAAACCTAGCCAGTATA-------GAAAATAAAAGC-GTAGATTGAATTGTTGTTCAGCATTAGGAAATATGGTAACCATTTTTCATGTAAATTTAAAAAGTTAAACATTCTATATTTATCAAAAGGAATCAG--TTTATTTGCTAGAATTCACCAGGGAAGAGTAGACAGAAACTTCTAACATGATAGAAGATATGTAT-- s canFam1.chr9 16590193 434 + 53642819 aactggataattaaattactatat-----------------aacttg--tagtatacaagtaaaacaactcagaaggcatatttagttaagtagaaagactgaaaattaatgaactaagtattaagatcaaagttagataagaaaaatgggtaacttgaaaaaagcagaagacagaaacaaaaatttaagagcagaacttaaataaaaaatgga---gaggaacaaaaaatatttcaaaacAGAT-TTTTAAAATCATCCCAAAAGATACATAAACCgtgtgtgtgtgtgtgtgtgtgtgtAAAGGTAGTAGATCCAA---TTGTTCAGCATTAGAAAATATGACAG-----TATTA--TCAAGTAAAAAATTTCAAGATACTAGATTTATCACAAGAAGCTAGAATGTACTTGTTAGAATTCAGCATGTAAGAATTGACAGAAACTCCTAG------AGGGTGCatgtatat a score=16547.0 s hg17.chr17_random 865033 81 + 2618010 Tacacacacacacacacacacacacacacacac---------------------GAC--ATA-ATCtg-----tgccaagtactgttttaagt---gcctcaaaaatattaat s panTro1.chr19 20318246 73 - 82489036 Tacacacatacacacacacacacac-----------------------------GAC--ATA-ATCtg-----tgccaagtactgttttaagt---gcctcaaaaatattaat s mm5.chr11 24723662 77 - 121648857 CACACACACACACACACACACACACACACACAC---------------------GTTTAAGA-GCTGG-----AGTTGAGTAA------AAAT---GGGTCATAAATATTAAA s rn3.chr10 24742271 104 - 110733352 TACACACACACACACACACACACACACACACACACACACACACACACACACACACAC--ACA-GTGTAAGAACAGTTGAGTAA------AAATGAAGGGTCATAAATATTAAA s canFam1.chr9 16590627 88 + 53642819 tatatacatacatatacatgcatatgtaaatatgcatgtg--------------tat--gtatatgtg-----tatgcagcat-gtatctatt---gtatcacaaatactaat a score=1272.0 s hg17.chr17_random 865114 3 + 2618010 tta s panTro1.chr19 20318319 3 - 82489036 tta s mm5.chr11 24723739 3 - 121648857 CTA s canFam1.chr9 16590715 3 + 53642819 tta a score=4161.0 s hg17.chr17_random 865117 32 + 2618010 tttagtcctttcaacaaccttttgaggtagAt s panTro1.chr19 20318322 32 - 82489036 tttagtcctttcagcaaccttttggggtagAt s canFam1.chr9 16590718 22 + 53642819 tttaatcct----------ttttgaaatagtt a score=27723.0 s hg17.chr17_random 865149 307 + 2618010 ttgttttgtgacaaagtctctctgtcacccaggctggagtatagtggtgcagtcacggctcactgcagcctcaaactc--ctgggtttaagtgattctcccacttcagcctcccatgtagctaggactgcctacacatgacagtgcatctggttaatttttaaatttttttgtagagacagggtctcgttatgttgcctaggctggtctcaaatgcctggcctcaggtgatcctcctacctcagagagaggatcttgccatcctcccaaat-gttgagattacaggcatgagccactacgccAGCCAGAT s panTro1.chr19 20318354 310 - 82489036 ttgttttgtgacaaagtctctctgtcacccaggctggagtatagtggtgcagtcacggctcactgcagcctcagactctcctgggtttaagtgattctcccacttcagcctcccatgtagctaggactgcctacacatgacactgcatctggttaattgctaaatttttttgtagagacagggtctcgttatgttgcctaggctggtctcaaatgcctggcctcaggtgatcctcctacctcagagagaggatcttgccatcctcccaaatcgttgagattacaggcatgagccactacgccAGCCAGAT a score=38186.0 s hg17.chr17_random 865456 209 + 2618010 TCtgttacttctattttgtagataaactaaggcagaaaaatgatttcagtaacttaaataatttgtccaaggtaacatagctagtaagtaacatagctgggattt-aaacccaagcagtttaactcaaaagtctgcacttttaaccaccacattgtgctatCTTTATTTTTCAAATTAAATATTTCAAAAACATAGTACATTTACATAAT s panTro1.chr19 20318664 209 - 82489036 TCtgttacttctattttgtagataaactaaggcagaaaaatgatttcaataacttaaataatttgtccaaggtaacatagctagtaagtaacatagctgggattt-aaacccaagcagtttaactcaaaagtctgcacttttaaccaccacattgtgctgtCTTTATTTTTCAAATTAAATATTTCAAAAACATAGTACATTTACATAAT s canFam1.chr9 16590740 194 + 53642819 tctgttatctgcactttataaataaactaaggcacaaacatggttt-----aattaaataacttgtccaaggtca-atagctagtaagtgacagagcctggatttcaaacccaagcagtttaattcacaagtctatacttctaaccaccacattatgctTTTTATATTTTT--AATT--GTATTGTAAACATATAATACATGGT------ a score=15922.0 s hg17.chr17_random 865665 115 + 2618010 TTGAAATTCAAATGCTATGCAATGAAATTTTGTTTGCCAGT-CTACCC-TGTCTTCTTTCTCAGCTCCATTCCTCAACAGAATGAAATGAAATTTT-------CCTTTCAAAACTATACCCTGC s panTro1.chr19 20318873 117 - 82489036 TTGAAATTCAAATGCTATGCAATGAAATTTTGTTTGCCGGTTCTACCCCTGTCTTCTTTCTCAGCTCCATTCCTCAACAGAATGAAATGAAATTTT-------CCTTTCAAAACTATACCCTGC s mm5.chr11 24724482 103 - 121648857 TTAAAATTCATATGCTGTCTGATGAAAT--------------CTCCACTTGTCCT-TCTGTCAG-TTCGCCCCTCAAAA----GTGATGAGTTTCTTATGT-ATCGTTAGAAACTCTATCATAA s canFam1.chr9 16590934 106 + 53642819 TTAAAATTCAAATGATATATAGTGAAAATTTG----------TCATCTTAATCCT-TCTCTCTGCTC---TTCTCAGAA----ACAACCAGTTTCCTGTGTAACCTTTCAAAACTGTTCCATGG a score=10614.0 s hg17.chr17_random 865780 29 + 2618010 TTTTGTAAGCATTTATATATATACTTTTT s panTro1.chr19 20318990 29 - 82489036 TTTTGTAAGCATTTATATATATACTTTTT s mm5.chr11 24724585 28 - 121648857 TTTTGTAGTCATTTATGTAC-TATTTTCT s canFam1.chr9 16591419 29 + 53642819 TTTTATAAGCATTTCTACATATACTTTTT a score=16127.0 s hg17.chr17_random 865809 80 + 2618010 AAGAacacagaaatcaccatgccatacataatgttctgcacctttcttcttttccccttaactg------taaatattggaggcca s panTro1.chr19 20319019 80 - 82489036 AAGAacacagaaatcaccatgccatacataatgttctgcacctttcttcttttccccttaactg------taaatattggaggcca s canFam1.chr9 16591448 83 + 53642819 AAGAACACAGAAATTAGCATGCCATGCATTATATTCTGCACC---CTTCTTTTCCCCTTACATGTGTGTATAAATAAAAGAGGTCA a score=8635.0 s hg17.chr17_random 865889 44 + 2618010 ttta-------------ttactagtatataagagatgtatcattcttGATAAGGTCT s panTro1.chr19 20319099 44 - 82489036 ttta-------------ttactagtatataagagatgtatcattcttGATAAGGTCT s canFam1.chr9 16591712 57 + 53642819 TTTAAAAAATAAGTCAGTTATCAGTATATAAGAGTTGCATCATCCTTGATGAGGACT a score=23274.0 s hg17.chr17_random 865933 111 + 2618010 GTTTACAGCAGACATGCTAAATGGT-GAAGCTATTTCAAATAATAACA--AACAAGTTAGAGAAGGTTATGACCATTAGTATAGTATGATTTAACATAATTTTTGATATTT-------------TTG s panTro1.chr19 20319143 111 - 82489036 GTTTACAGCAGACATGCTAAATGGT-GAAGCGATTTCAAATAATAACA--AACAAGTTAGAGAAGGTTATGACCATTAGTATAGTATGATTTAACATAATTTTTGATATTT-------------TTG s rn3.chr10 24743658 116 - 110733352 GGCTGCATCATTTTTAATAAATGTTAAAAGCCATTTCAAATAATACCA--GAGAAATTACATA----TATG-----TAATATACTATAAATTAGAATAGTGTTTTTTATCTGCTTCATATTTTATTG s canFam1.chr9 16591769 112 + 53642819 GTTTACAGCAGATGTGGTAAATTGT-GAAGTCATTTCTAATAAAAGCAGGAGCAAATCAGAGAAGGTTATGACCTTTTGTATACTAT-ACTTGACAAAGTTTGGGGGGTTT-------------TAA a score=5644.0 s hg17.chr17_random 866044 49 + 2618010 GCCAATATAACAA--------------------TTTTGAGCTAATATAACAACTG---------ATATAAATATTAGA s panTro1.chr19 20319254 49 - 82489036 GCCAATATAACGA--------------------TTTTGAGCTAATATAACAACTG---------ATATAAATATTAGA s mm5.chr11 24725352 46 - 121648857 GCCACTGTAGTAA--------------------ATTC---TTAATATAATGACTC---------ACAAAACTGCTAGA s rn3.chr10 24743786 78 - 110733352 AAACATATAATACCTAATTTAATTTTTGTTTTTTTTTAAGTTAATAGAACAATTCTTTTTTTAAAAAAATGTATTTGA s canFam1.chr9 16591881 43 + 53642819 ATGATTACAACAG--------------------TATA-----AATA-AGTAACTG---------ATATAATTATTGGA a score=5937.0 s hg17.chr17_random 866093 25 + 2618010 ACAGAAAAATTATCTTGCAGGTGTG s panTro1.chr19 20319303 25 - 82489036 ACAGAAAAATTATCTTGCAGGTGTG s mm5.chr11 24725398 16 - 121648857 AA---------ATCCTGCAAGTGTG s rn3.chr10 24744024 21 - 110733352 ATAGTAA----ATCCCACAAGTGTG s canFam1.chr9 16591924 25 + 53642819 ATTAAGAAATTATCTTATTTGAGTg a score=4587.0 s hg17.chr17_random 866118 16 + 2618010 ACAATATTGAATTATT s panTro1.chr19 20319328 16 - 82489036 ACAATATTGAattatt s mm5.chr11 24725414 15 - 121648857 A-ATTATTAAATTATT s rn3.chr10 24744045 16 - 110733352 ACTGTATTAAATTATG a score=-310.0 s hg17.chr17_random 866134 6 + 2618010 ATTAT------------T s panTro1.chr19 20319344 18 - 82489036 attatcattattattatt s rn3.chr10 24744061 6 - 110733352 AATAT------------T a score=27500.0 s hg17.chr17_random 866140 295 + 2618010 ATTAttttttgagatggagtctcgctctgtcgtccaggctggagtgcagtggcgcgatctcagctcactgcaagctctgcctcctgggttcatgccattctcctgtctcagcctcccgagtagctgggactacaggtgcccgccaccacgcccggctaattttgtttttgtatttttagtagagatggggtttcactgtgttagccaggatggtcttgatctcctgacctcgtgatcctcccgcctcggcctcccaaagtgctggaattacaggtgtgagccatcacgcccagcc s panTro1.chr19 20319362 295 - 82489036 attattttttgagatggagtctcgctctgtcgtccaggctggagtgcagtggcgcgatctcagctcactgcaagctctgcctcctgggttcatgccattctcctgtctcagcctcccgagtagctgggactacaggtgcccgccaccacgcccggctaattttgtttttgtatttttagtagagatggggtttcactgtgttagccaggatggtctggatctcctgaccttgtgatccgcccgccttggcctcccaaagtgctggaattacaggtgtgagccatcacacccagcc a score=1049.0 s hg17.chr17_random 866435 7 + 2618010 GACAATA s panTro1.chr19 20319657 7 - 82489036 GACAATA s canFam1.chr9 16592150 7 + 53642819 GGCTACA a score=22949.0 s hg17.chr17_random 866442 65 + 2618010 TTGAATTATTGAATATCTGT-----------TTG--AAACCATTGGCTTTCACATT---------TTCCCAAGG-----------------------------TTTGCTTTAAAAA s panTro1.chr19 20319664 65 - 82489036 TTGAATTATTGAATATCTGT-----------TTG--AAATCATTGGCTTTCACATT---------TTCCCAAGG-----------------------------TTTGCTTTAAGAA s mm5.chr11 24725866 95 - 121648857 TTAAATTATTGAATATCTGTGATACTGTTTATTGGAAAACCATTGAC-TTCACACT----CAAAGTTTTCAGGATCATT---------------TAGTCATT-TTTGCTTTAAATA s rn3.chr10 24744266 98 - 110733352 TTAAATTA-TGAATATCTGTGATAATGTTTATTGGAAAATC-TTGACTTCCATATTATACCAAAGATTTCAGGATCAGT---------------CAGTCATT-TTTGTTTTAAATA s canFam1.chr9 16592157 102 + 53642819 -TTGATTATTAAACATCTGTAAATATGT---TTG-AAAATCATTGGCTTTCACATT---------TTCCCAAGATTCTCTGGAGCACAGTTACCCAGTCATTCTTTGCTTTAAAAA a score=-1136.0 s hg17.chr17_random 866507 6 + 2618010 TG-------------AAGT s panTro1.chr19 20319729 6 - 82489036 TG-------------AAGT s mm5.chr11 24725961 19 - 121648857 AAGGTCTTGCCTCACAAAT s rn3.chr10 24744515 6 - 110733352 TG-------------AAGA s canFam1.chr9 16592259 6 + 53642819 TG-------------ATGT a score=77279.0 s hg17.chr17_random 866513 287 + 2618010 TAATCTTTTT--------------CAAGACAGATT---------GCACAAGTG-ATCTATC-------------------------------------TGATAATGAAGCAAATACTGAGC-----TTATCTTAGG----AGGACATTAATAACCTTTGTGTTTAGCCTCATCAAATTTAACAGTAATGCAAGCTATTATACAGCTAAGTAAAACC--TACTTTTCTGAAATTGGCACCATTCTGGGATAGTGATTAAATTACCATAATTATTGTAAGGTC-TAACAACCTTAGAATTAGTGGCTGAGGGTCCTG-AGGGTGGCATTTATATGGAGAAACACTGGTAGTTGTCAGCATTTT s panTro1.chr19 20319735 287 - 82489036 TAATCTTTTT--------------CAAGACAGATT---------GCACAAGTG-ATCTATC-------------------------------------TGATAATGAAGCAAATACTGAGC-----TTATCTTAGG----AGGACATTAATAACCTTTGTGTTTAGCCTCATCAAATTTAACAGTAATGCAAGCTATTATACAGCTAAGTAAAACC--TACTTTTCTGAAATTGGCACCATTCTGGGATAGTGATTAAATTACCATAATTATTGTAAGGTC-TAACAACCTTAGAATTAGTGGCTGAGGGTCCTG-AGGGTGGCATTTATATGGAGAAACACTGGTAGTTGTCAGCATTTT s mm5.chr11 24725980 316 - 121648857 AAATATCTATGAATTTGGAAGAAATAAAACCAATTAAATCTGAAGAAAAAGTT-CTTTATCTTTTCGGATTTTTATCAGATATAGAACTGGTCTTGAGTGATGATGGAGTAAATATTGAATGAACATAATCGTGTG----ATGTCGTCAGTAGCCTTTGCGTTTTGACTCTTCAAACTTAACAATTGTACAAGTTATCCGATAGCCACGTAAAGCA------TCTCTGATACTGGCATCATTCTGTAATAGTGGTTAGTATCCCATGATCACTGTAAGGTC-TGAAAACTGTAA---TAGTGGTTAATATCCC---------------------ATAATCATTGTAAG---------GTCT s rn3.chr10 24744521 259 - 110733352 AAAAGTTCTC--------------TACTCTGATTT---------TTATCAGTTCATAGAAC---------------------------TGGTCTTGAGTGAAGATGGAGTAAATTCTGAATGAACATAATCTTAGGACGTACGTCTTCAGTAGCCTTTGTGTTT-GTCTCTTCAAACTTAACAGT-GTACCAGTTAT----CAGCCAAGTAAAGCA------TCTCTGATACTGGCATCATTCTGAAATAGTGATTAATATCCCATAATCATTGTAAGGGG-TGAAAGCTTAAGAAC-------------------------------------AGAAACAC--ATTGTTTATAGCATTTT s canFam1.chr9 16592438 294 + 53642819 TTATTTTTTT--------------CAA----GTTT---------TAATAGGTT-GTCATTC---------------------------TGTCTTC---TGGTAATGGAATAAATATGGAGC-----ATATATTTAA----AGAACATTGGTAACCTTTGTGTTTAGCTTCCCCAGACTTTACAGTCATGCCAACTATTTGATAGCTAAGCAAAACATTTTCTTTTCTGAAGTTGGCACCATTCTAGAATAGTGGTTAAATTACCATGATCATTGTAAGCTGACAGAAACTTTAGAATCATTTGTTAAGGATCCTACAGAGTGGTGTTTATTTGGAGGAACACTAGGTGATACTGACATTTC a score=3855.0 s hg17.chr17_random 866800 24 + 2618010 GAAGAGTCAAAAA-------CAAGATAATAA s panTro1.chr19 20320022 24 - 82489036 GAAGAGTCAAAAA-------CAAGATAATAA s mm5.chr11 24726296 31 - 121648857 GAAAACTTAAGAACAGTCTTCAAAATCTTGT s canFam1.chr9 16592732 25 + 53642819 AAAGACTGAAAAAA------CAGGATCACAG a score=2215.0 s hg17.chr17_random 866824 12 + 2618010 AAAGTGGTGACa s panTro1.chr19 20320046 12 - 82489036 AAAGTGGTGACa s mm5.chr11 24726327 12 - 121648857 AAAGTGACATCA a score=17505.0 s hg17.chr17_random 866836 202 + 2618010 catggcgaaaccctgtttctactaaaaacaaaaattagtcaggcctggtggcgcacgcctgtagttccagctactcaggaggctgaggcaggagaattgcttgaacccgggagccgaaggttgcagtgagccgagattgcaccactgcactttagcctgggtgacagactgagactgagactccattttccaaagaaaaaaa s panTro1.chr19 20320058 194 - 82489036 catggcgaaaccctgtttctactaaaaacaaaaattagtcaggcctggtggcgcacgcctgtagttccagctactcaggaggctgaggcaggagaattgcttgaacccgggagccg--ggttgcagtgagccgagattgcaccactgcactttagcctgggtgacagactgagact------ccattttccaaagaaaaaaa a score=7336.0 s hg17.chr17_random 867038 33 + 2618010 GAGGTGGTGACACAAAGGCAACGATCTTTATTC s panTro1.chr19 20320252 33 - 82489036 GAGGTGGTGACACAAAGGCAACGATCTTTATTC s canFam1.chr9 16592757 33 + 53642819 GACCTGGTGACACAAAGGTAGAGACCTTTATTC a score=-31.0 s hg17.chr17_random 867071 1 + 2618010 C s canFam1.chr9 16592790 1 + 53642819 T a score=38.0 s hg17.chr17_random 867071 1 + 2618010 C s panTro1.chr19 20320285 1 - 82489036 C s mm5.chr11 24726369 1 - 121648857 T a score=18285.0 s hg17.chr17_random 867072 37 + 2618010 CTTTTTGTATAAATTAATC---TCTTTATTTTTATAGCAT s panTro1.chr19 20320286 37 - 82489036 CTTTTTGTATAAATTAATC---TCTTTATTTTTATAGCAT s mm5.chr11 24726370 35 - 121648857 CCTTTTATAGAAATTGA-----TTTTTAGTTTCATAGCAT s rn3.chr10 24744780 35 - 110733352 CCTTTTATAGAAATTGA-----TTTTTAGTTTTATAGCTT s canFam1.chr9 16592791 40 + 53642819 CTTTATATACAGATTAATCTGTCTTTAATTTTTTTAGCAT a score=59285.0 s hg17.chr17_random 867109 129 + 2618010 TTAGTAGACTCATTAAATTTCTTATTATTAAAGTATTTCAAGATTTACTCCAGGTTTTACAATTGTTATACTCTCCTAAGCTTTA-----AACATTTAAGGTTTTTGATGGAAGTCCCAATT-TTTCAGTTGTTT s panTro1.chr19 20320323 129 - 82489036 TTAGTAGGCTCATTAAATTTCTTATTATTAAAGTATTTCAAGGTTTACTCCAGGTTTTACAATTGTTATACTCTCCTAAGCTTTA-----AACATTTAAGGTTTTTGATGGAAGTCCCAGTT-TTTCAGTTGTTT s mm5.chr11 24726405 108 - 121648857 TTAGCAAGCTTATCAAAT---------------TATTTCAAGGTATG---TAGGTTTTACA---GTTATAATTTCCTAAACTTTC-----AACATTTAC-GTTTTTGATGGATGTTGTGATTATCTTAGTTATTT s rn3.chr10 24744815 108 - 110733352 TTAGTAAGCTTATTAAAT---------------TACTTCAAGATATG---TAGGTTTTGCA---GTTATAATTTCCTAAACTTTC-----AACATTTAT-GTTTTTGATAGATGTTGTGATTATCTTAGTTGTTT s canFam1.chr9 16592831 125 + 53642819 TTAGTATGCTCATTAAAT----TTTTATTGAAGTATTTCAAGATCTACTTCAGGTTTTACAACAATTATACTCTCCTAAGCTTTA-----AACAAATAAGGTTTTAGGCAGAAGTTGCAATT-TTCTGGTTGTTT s danRer1.chr17 12314951 117 + 35757233 TTAGGTAGCTTGTAATTATGCATAATGTACAAATATTTCAATATTTACTCCAGGTATTATA--------ACTTTATTATGTTTTATAGGGAGCAGT----ATTTTAGTTACATGATG------TTTCAGCAAGTA a score=1413.0 s hg17.chr17_random 867238 3 + 2618010 ACT s panTro1.chr19 20320452 3 - 82489036 ACT s rn3.chr10 24744924 3 - 110733352 ATT s canFam1.chr9 16592956 3 + 53642819 AAT s danRer1.chr17 12315068 3 + 35757233 ATT a score=3327.0 s hg17.chr17_random 867241 18 + 2618010 TTATAAACGAGCTTGATG s panTro1.chr19 20320455 18 - 82489036 TTATAAACGAGCTTGATG s rn3.chr10 24744927 18 - 110733352 TTAATCATTATTTTATAG s canFam1.chr9 16592959 17 + 53642819 TTATAAA-GAGCTTATTG s danRer1.chr17 12315442 18 + 35757233 TTAATAAATATTTTGTTT a score=13531.0 s hg17.chr17_random 867259 62 + 2618010 TATGTTTCAAAAGGTTTACAACCCCAAACATAAATATT------TCATACATTGGA-----TATGAAATAAGG s panTro1.chr19 20320473 62 - 82489036 TATGTTTCAAAAGGTTTACAACCCCAAACATAAATATT------TCATACATTGGA-----TATGAAATAAGA s rn3.chr10 24745107 55 - 110733352 TATGTTTTAAAAGGTTTACCA-TCCAAATATAAGTAGG------TTGGTTATT-GA-----TATTAAG----- s canFam1.chr9 16592976 56 + 53642819 TATGTTTTAAAAGGTTTACCATCCCAAGCAGATAAATA------TTGGGTATT-GA-----AATAAAG----- s danRer1.chr17 12315460 68 + 35757233 TAAACTTCAGAAAATTTAGCACACTGAAAAAAAATATTCAAAGATGATTCCTTGGATTTACTAAAAAA----- a score=180704.0 s hg17.chr17_random 867321 358 + 2618010 TATCTAATTTGAGGAAGTG-GTGTAAATTATGTGTGTT----------GATAGGTATAAAATTAGACA--ATTTGGC--AATCCGTTCATTAATATGGTGTAAATTTGATAAA-T----------------------GAAATTTATTAAAAAGTCATTTTTTCTCCTA--CTT------GCCCTAAAATTCTACTATATGAATAGTAAGT-AAAT-------ACTTTGTAATTGGTATCATATAATGTGACACTAATTA-AACTTATTAATGATTTTTAAATA--CTTTAA----CTTGTGTTTTGTTTGAATTTCAGGTAATAACTCTTTCCAATACTTTGTATTTTGTTTAGTATGCCACTTTTTGGAAGT------GGTCACTGTCAATATC-TTGTTATGGTTTGATGGCCTTGGAGATTTA s panTro1.chr19 20320535 358 - 82489036 TATCTAATTTGAGGAAGTG-GTGTAAATTATGTGTGTT----------GATAGGTATAAAATTAGACA--ATTTGGC--AATCCGTTCATTAATATGGTATATATTTGATAAA-T----------------------GAAATTTATTAAAAAGTCATTTTTTCTCCTA--CTT------GCCCTAAAATTCTACTATATGAATAGTAAGT-AAAT-------ACTTTGTAATTGGTATCATATAATGTGACACTAATTA-AACTTATTAATGATTTTTAAATA--CTTTAA----CTTGTGTTTTGTTTGAATTTCAGGTAATAACTCTTTCCAATACTTTGTATTTTGTTTAGTATGCCACTTTTTGGAAGT------GGTCACTGTCAATATC-TTGTTATGGTTTGATGGCCTTGGAGATTTA s mm5.chr11 24726758 334 - 121648857 TATCTAATTTGAGGAAACA-GTGTAGTTCCTA---ATG----------AATAGGTGTAAAATTAAAGA----TCAAC--CAACTGTTGGTTCATCTTG---GTATTTGATAAA-T----------------------GAAATTTGTCAAAAAGTCCTTTTTT---CTA--GTT------ACCTTAAAATTCTGTT-----AGTAGT------AAT-------GTTTTGTGATTAGTATTGTATAATGTGAAACTAAT------TTAATAATGATTTTTAAAAAATCTTTAA----CTTGTGTTTTGTTTGAATTTCAGGTAATTATCCTTTCCAATACTTTGTATTTTGTTTAGTAAACCACTCTTTGGAAGT------GGTCACTGTCAGTATC-TTGTTATGGTTTGATGGCCTTGGAGATTTA s rn3.chr10 24745162 334 - 110733352 TATCTAA-TTGAGGAAACA-ATGTAGTTCCTT---ATG----------AATAGGTGTAAAATTAAAGA----TCAAC--TGCCTGTTGGTTCATCATG---ATATTTGATAAA-T----------------------GAAATTTGCCAAAAAGTCCTTTTTTGT-CTA--GTC------ACCTTAAAATTCCATT-----AATAGT------AAT-------GTTTTGTGATTAGTATTGTGTAATGTGAAACTAAT------TTAATAATGATTTTAAAAAA-TCTTTAA----CTTGTGTTTTGTTTGAATTTCAGGTAATTATCCTTTCCAATACTTTGTATTTTGTTTAGTAAACCACTCTTTGGAAGT------GGTCACTGTCAGTATC-TTGTTATGGTTTGATGGCCTTGGAGATTTA s canFam1.chr9 16593032 349 + 53642819 TGTCTGATGGGAGGAGGCA-ATGTAAATTATGTAGGCA----------AACAGGTATAAAATTAGACA--ATCTGGC--AATCAATTCTTCAGTATGGTGTAAATTTGATAAATT----------------------GACATTTATTTAACAAGTCTTTTTTCTCCTGTTTTT------ACCCTAAAATTCTATA---TTAATAGT-----AAAT-------ATTTCATAATTCATATCATATA-----ACACTAGTTA-AATTTATTAATGATTTTTTAAAA--CTTTAA----CATGTGTTTTGTTTGAATTTCAAGTAATAACCTTTTCCAATACTTTGTATTTTGTTTAGTATGCCACTTTTTGGAAGT------GGTCACTATCAATATC-TTATTATGTTTTGATGGCCTTGGAGATTTA s danRer1.chr17 12315528 402 + 35757233 TTTTTGCGTTAAGTGGTTGTAAACAATTTATTTGTGTTGAATTTGAGAAAAAAAAATTAAGTTGAACATTATTAAACTTAATTTGTTTGTTTATATTC---AACACAAATAAA-TTGTTTGCAACAGTTGTGCATGCAAAACTTTTTTCAGTGCATGTTTGTGTTATA--CTTGTGAAGGCTCAAAGGTTCTCACTTGTAAAGCGAAAGTAAAATTAAAGTGATTTTGAAAGTGGAAT--TAAAATGACCCACTAGTAAGGACATTTCACAGGTTTTTTACTA--TTTAAAAAGGCTTGTGATTCAGCCAAAAT-------ATTTTTTTTTCTATTGGTTTCTA--ATGATTGG-----CATTTGTTGGGGTTGTGGTAGGCCATAGGCAATATCATTAACCTGATTTAAAAACAATGGAAGCCTA a score=80721.0 s hg17.chr17_random 867679 251 + 2618010 AAACCGAGTAAAAGTGTAAGCAGTCTTTCTTATTTAG--TTATGAGTTTTAAAACCACTTATGTTCCAACTAGGAAAAAATGCAAGTAGATTTACCATGA-AATATGAATTATATTTAAAAAACATCTTAACAGT------TGACTGACTTAGTGAAA--------------CAGACTGGGCAATTCCACTTATGGAATTGT-AACATAAAATTCCATCATATAGTTTCCATTAAAGGTAGTAGGTTTTTATAATCTGTTAGACGTTCTTTGCAA s panTro1.chr19 20320893 251 - 82489036 AAACCGAGTAAAAGTGTAAGCAGTCTTTCTTATTTAG--TTATGAGTTTTAAAACCACTTTTGTTCCAACTAGGAAAAAATGCAAGTAGATTTACCATGA-AATATGAATTATATTTAAAAAACATCTTAACAGT------TGACTGACTTAGTGAAA--------------CAGACTGGGCAGTTCCACTTATGGAATTGT-AACATAAAATTCCATCATATAGTTTCCATTAAAGGTAGTAGGTTTTTATAATCTGTTAGACGTTCTTTGCAA s mm5.chr11 24727092 219 - 121648857 AAACCAAGTAAAAGTGTAAGCAGCCTTTCTTATTTAG--TTATGAGTTTTAAATCCACTTTTGTTCCAAATC-GAAAAATTGAAAGTAGATTTTCTATG--GATATGAGTTA---TTAGAAAACATATTGACAGT------------------GAAAG--------------CAGACT-GCCAATTTCATCTGTGGGATTGT-AA-------------CAAGCAGTTCCCACTAAGGGTAATGCATTTTAAAAAT-TATTGTATTTTCTTCCTAA s rn3.chr10 24745496 187 - 110733352 AAACCAAGTAAAAGTGTAAGCAGCCTTTCTTATTTAG--TTATGAGTTTTAAGTCCACTTTTGTTACGAATAGGAGAAATTGAAAGTAGACTTACTATG--AATATGAGTTAGA-ATAGAAAACACCGTGACAGG------------------GAAAG--------------CATGCT-GCCAGTTTCACCAATA-------------------------------------------------ATTTTAAAAAT-TATTGTGTTTTCTTCGCAA s canFam1.chr9 16593381 236 + 53642819 AAACCGAGTAAAAGTGTAAGCAGCCTTTCTTATTTAC--TTACAAGTTTTAAATC--ATTTTATTCCAAATAGGAAAAGGCAAAAGTAGATTCCTCATGG-AATATGAATTATA--TAAAAGATATCTTAACAGT------TGACTTAGT---GAAAA--------------CAGACTGGTTAGTTCCATTTGTGGAATTTTCAATATAAAATTCAATCAAACACTT-----TAAAGGTAGTGGGTTTCTATAAT----TAGATATTCCTTGTAA s danRer1.chrUn 169565521 238 + 367113659 ACACCAAAATAAA---TAAACAACAACTGAAAACTGAGCTCATAAGTTCCATAACAACCT--------------------TGCATGAAGATGTAAAACAAGAAAATGAAATTAA-ATCAAGAACAAATCAAGAGCGTATAGCAACATAATAAAAAAAAAAAGTCTATCTCTTCATATCATGCCCTGTCGTTTATGTTGTGGT-GTCGCAAAA------TACATTGTTTACAATAATTATGTTTGGTATTTACAAT---TTAGACAACCACAT--- a score=16434.0 s hg17.chr17_random 867930 23 + 2618010 ACTTTATTAATGTGAATACATTT s panTro1.chr19 20321144 23 - 82489036 ACTTTATTAATGTGAATACATTT s mm5.chr11 24727510 23 - 121648857 ACCTTAATAGTATAAATATATCT s rn3.chr10 24745684 23 - 110733352 GCCTTAATAATGTAAATACATTA s canFam1.chr9 16593617 23 + 53642819 ACTTTATTAATGTGAATATATCT s danRer1.chrUn 169565759 23 + 367113659 TCTTGTTTTACATGTGTACATTT a score=29541.0 s hg17.chr17_random 867953 139 + 2618010 GCTTTTTTAAAAAAATTAAGTGAACTTCTAAAGAAAATAGa--------aattaaaaatttttaatttaaattttGCTTTATAGTTTAATTTTTT---AGTATC-ATTTAGAATTAT----CAATTATTTTACTATATCCATATATACTGTCCCA s panTro1.chr19 20321167 139 - 82489036 GCttttttaaaaaaattaagtgaatttctaaagaaaataga--------aattaacattttttaatttaaattttGCTTTATAGTTTAATTTTTT---AGTATC-ATTTAGAATTAT----CAGTTATTTTACTATATCCATATATACCGTCCCA s mm5.chr11 24727533 138 - 121648857 ACTTTTT---AAAAGCACAGTAAATTACTATAGAAACTAAAT-------CATTTAGTTATTTTCTTATATTTTTTGCCTTAGTTATTAATTTGTA---TCCATC-ATTAATAATTCT--TATAGTCTCATAACAATGTTAATAT-TATTGTCCTA s rn3.chr10 24745707 150 - 110733352 TCTGCTTTAAAAAG---CAGTAAATTCCTCTAGAAAATAGAGAGTAAAACACTTAGTTATTTTCTTACA-TTTTTGCATTAGTTATTAATTCTTTGTGTCCATC-TTTAATAATTCTTATAGAGTCTCATAACTATATTGTTACTTATTGTCCTA s canFam1.chr9 16593640 123 + 53642819 TCTTTTTTTTAAGGAT-TAGTGAATTCCTAAAGAAAATAGG--------GA----------------GAAATTTTATATTATAGCTAAATTCTTT---AGTATCAATTCAGAAATCTTTCACA-TTCTTTTACCATAT---TATTTACTGTTCCA a score=25847.0 s hg17.chr17_random 868092 123 + 2618010 GTAACCTGTCATTCTCTTTAAAGAAAAAAG---------------------------------------------------------------------------------------------------TATTCATTGTCCTCTTTAGATATT---TACAA-ATATCTGATTTCTAAAAAATAAACATCACAAATGTCTATTCAATTAAGCTTCAGTTGAGTTGTT s panTro1.chr19 20321306 123 - 82489036 GTAACGTGTCATTCTCTTTAAAGAAAAAAG---------------------------------------------------------------------------------------------------TATTCATTGTCCTCTTTAGATATT---TACAA-ATATCTGATTTCTAAAAAATAAACATCACAAATGTCTATTCAATTAAGCTTCAGTTGAGTTGGT s mm5.chr11 24727867 212 - 121648857 GTAATCTGTCATTCTTGTTAAAAGAAAAAGTATTCCCTGGAGTTTGGGCTATGGCTCAATGGCAGAGAACCTTTTTAGCATTATTCATGATGCCCTAGGTTCATCCTAG----CACACACACCAGAAAATATTCATTGACC-CTTGAGCTGTCACAGATCA-ATGTCTGATTTC--------AAACCATTCAGATGCCTTTTCAATTGAGCTTCAGTGAAGCAGTC s rn3.chr10 24745857 206 - 110733352 CTAATCTGTAATTCTTGTTAAAAGAAAAAGTAGTCCCTGGAGTTTGGGATATGGCTCAGTGGCAGAGAACCTTTTTAGCATTATTCATGATGCCCTGGGTTCATCTTAGCACACACACACACCAGAAAATATTCAATGTCC-CTTGAGATATCACAGACCAGATGTCTGGTTTT--------AAAA-----------CTATTCAGATGAGCTTTAGTTAAACCATC s canFam1.chr9 16593763 104 + 53642819 GTGATCTATCATTCTCTTTA----AGAAAG---------------------------------------------------------------------------------------------------TATTCATCGTCCCCCTCAGACA-----GACTA--------ATTTTTTAAAAGTAAGAGTCACAAACATTTATTCAAGTGAGCTTCAATTTT------ a score=14332.0 s hg17.chr17_random 868215 120 + 2618010 TTTTTCTCAGAATGATT---------------------------------------------------------------------------------------------------------------------AAGAATATAGCACTTTCATTAG---TGGTGACTTTGCTCTAAAGGTCTGAAATTTTCACTTA-AATTAC-TTTCAGAACCAGTTTGAGGCAT---------------------------------------CAGGCTA------------GAGACA---GTT s panTro1.chr19 20321429 120 - 82489036 TTTTTCTCAGAATGATT---------------------------------------------------------------------------------------------------------------------AAGAATATAGCACTTTCATTAG---TGGTGACTTTGCTCTAAAGGTCTGAAATTTTCACTTA-AATTAC-TTTCAGAACCAGTTTGAGGCAT---------------------------------------CAGGCTA------------GAGACA---GTT s rn3.chr10 24746067 139 - 110733352 TTGTTCGCAGCATGATT---------------------------------------------------------------------------------------------------------------------ATTTATGCAACACTATT-TTAG---TGCTTACTTTGCTAAAGGAGTCTAAAATTCTGTCTTA-----AC-TGTCAGAATCACTTAGTGACACATGAGAAAATAAGTTTAGCCA------------------CACGGCA------------GACACACGTGTT s canFam1.chr9 16593867 293 + 53642819 TTTCTCCCAGCATGATTACATTAAGAATCTGGCACTTTTAggtgcctgactggctcagtccattagagcatgtgactcttgatcttggcgttgagttcaggtcctacactgggcgcagagcttactttaaagaaaaaGAAATGGcactttctttagtgatgatgactttgctgcaaaggtctgaaattttcacttgaaattacttttcagaatgagtttgaggcacatatgaaaatcagtttaattacttaattaacatacttagtagaccacaatgttttatctagaaa---gtt a score=44963.0 s hg17.chr17_random 868335 126 + 2618010 TGTagtttgtcattcacttattctgtagactctcactccccataacttttggtcctttcc--aaaagcaaattcaattttataagatgaagatttgactttgagatcattcaaaag---agtgtCAGAGGg-- s panTro1.chr19 20321549 126 - 82489036 TGTTgtttgtcattcacttattctgtagactcgcactccccataacttttggtcctttcc--aaaagcaaattcaattttataagatgaagatttgactttgagatcattcaaaag---agtgtcagaggg-- s mm5.chr11 24728184 126 - 121648857 TGCCTTTTGTCCTTTGCCTATTGTATAGACTTGCACT-TGTGTGACTTTGAAACTTTCCA--AAGAACAAATTCAGTTTCA-GGCATGAA-ATTTGACTTGAAGGCCATATAAAAAGTTAATGTCAAAGTA-- s rn3.chr10 24746206 122 - 110733352 ----TTTAAGTAGAAGCCTGTTATATAGACTTCTACT-TGTGTGACTTTGAACCTTTCCG--AAGAGCTAATTCAGTGTCA-GGCATGAA-ATTTGACTTTAAGGCCATAGAAAAATTTAATGTCAAAGGA-- s canFam1.chr9 16594160 132 + 53642819 tgcagtttgtcattcacttactctgtaggcttggactgttcaagacttttggaccttttcaaaaaagtcaattcagttttgaaaggtgaagattttactttgagaacatccaaaagga-tatatcagagAGAG a score=28355.0 s hg17.chr17_random 868461 304 + 2618010 gctgggcacagtggctcatgcctgtaatcccagcacttcgggaggccaaggtgggtggatcacttgaggccaggagtttaagaccagctggccaacatggcaaacccctgtctctactaaaaatgcaaaaattagccaggcgtggtggtgcccgcctgtagtcccagctactcaggaggctgaggcacaattgcttgaacccaggaggcggaggctgcagtgagccgagatcacaccactgtactccagcctgggcaacagagtgagcctctgtctcaaaaaaaaaaa-----agagagaaagagaaaG s panTro1.chr19 20321675 309 - 82489036 gccgggcacagtggctcatgcctgtaatcccagcacttcgggaggccaaggtgggtggatcacttgaggccaggagtttaagaccagctggccaacatggcaaacccctgtctctactaaaaatgcaaaaattagccaggcgtggtggtgcccgcctgtagtcccagctactcaggaggctgaggcacaattgcttgaacccaggaggcggaggctgcagtgagccgagatcacaccactgtactccagcctgggcaacagagtgagcctctgtctcaaaaaaaaaaaaaaagagggagaaagagaaag a score=100.0 s hg17.chr17_random 868764 1 + 2618010 G s rn3.chr10 24746328 1 - 110733352 G a score=-114.0 s hg17.chr17_random 868764 1 + 2618010 G s canFam1.chr9 16594292 1 + 53642819 T a score=389097.0 s hg17.chr17_random 868765 1080 + 2618010 TCACAACATTTTGAACAATGTCAAATGTCATTGCTCTTTAGCGTTCCAAAATGACAATTTGAAACATTAGGATATAAAAG-TTTGGTATGATTGGTTAATTACTTTATAGTCATGCCCTATCTTTGATTTGTTAGACTTCCCATGCTTTAAATCTT-GATATACGTAGGGCCTTTAAAAT-GGTCAACTAAAAAGTCACCATTCCTC-----TACGT--TTTTTC-------GTGACTTGATTTGTAAAACACAGAATGGGA-TTACTGTTTTGCCATGCATCTGTATTTAGCAGATGATTACTAGataata-------------attataatttttta---tgttataaaaaaGAAAG--------TATATAAACTCAA--AAAAGCTCAC-TTTTTTGTCTAAATTGTTTTTGCTCTT---ATACAATAGAATACATATTTAAGTTGTATTTTTATTTGCatttaataatttattaattaaatGTATTTCTTTG----TCAGATTTCAAATGATTGAGGTGACTTGTAAGAATTTGTTTTATGCCCTGTTGCTGATCAA--ATCATTGGTCTTCCC--TATAGCTCCTTACAAAATTATGCAATCAGTGTTCCATTTGGAGTAAACATTTAGTGTCTTATCT----TGATAGAGTAATTGGCTACATTTCTCTTTCTATGCATGAAGTTG-TGTAAAAGGACCAATTCACATg-tataattggcagagagcatggattctggacttaaca---------ttttatcccattctcactacttactaattttatgac----actggacaagttatttagcttctcagcctcagtttcctcatctgaaaaaatgaggacaatatctacttccaggtttataaa-tagttatatata-ttttaaaagcactgtgcacaatagcacatatcaggcatttaagaataaatgtttgttTCCTTTCCTGTTCTTATTTTCACATAT--TGGTAGTTTGAGACTAAGTT----------AATAACTTTTTAGGCAGTCACCCTAAACATGACTTTCAAGAGTTATTTTAGGATTAGTCTGCCTTTTACTTTAGTAAGTACTGTATTCTCTCCATTGCCAGGAGGAATATTTGAAAAAGGA-AGGAATGATTTGAACATTGTAAATAGCTAACTGAAT s panTro1.chr19 20321984 1082 - 82489036 tcacaacattttgaacaatgtcaaatgtcattgCTCTTTAGCATTCCAAAATGACAATTTGAAACATTAGGATATAAAAG-TTTGGTATGATTGGTTAATTACTTTATAGTCATGCCCTATCTTTGATTTGTTAGACTTCCCATGCTTTAAATCTT-GATATACGTAGGGCCTTTAAAATGGGTCAACTAAAAAGTCACCATTCCTC-----TACGT--TTTTTC-------GTGACTTGATTTGTAAAACACAGAATGGGATTTACTGTTTTGCCATGCATCTGTATTTAGCAGATGATTACTAGataata-------------attataatttttta---tgttataaaaaaGAAAG--------TATATAAACTCAA--AAAAGCTCAC-TTTTTTGTCTAAATTGTTTTTGCTCTT---ATACAATAGAATACATATTTAAGTTGTATTTTTATTTGCatttaataatttattaattaaatGTATTTCTTTG----TCAGATTTCAAATGATTGAGGTGACTTGTAAGAATTTGTTTTATGCCCTGTTGCTGATCAA--ATCATTGGTCTTCCC--TATAGCTCCTTACAAAATTATGCAATCAGTGTTCCATTTGGAGTAAACATTTAGTGTCTTATCT----TGATAGAGTAATTGGCTACATTTCTCTTTCTATGCATGAAGTTG-TGTAAAAGGACCAATTCACATg-tataattggcagagagcatgaattctggacttaaca---------ttttatcccattctcactacttactaattgtatgac----actggacaagttatttagcttctcagcctcagtttcctcatctgaaaaaatgaggacaatatctacttccaggtttataaa-tagttatatata-ttttaaaagcactgtgcacaatagcacatatcaggcatttaagaataaatgtttgttTCCTTTCCTGTTCTTATTTTCACATAT--TGGTAGTTTGAGACTAAGTT----------AATAACTTTTTAGGCAGTCACCCTAAACATGACTTTCAAGAGTTATTTTAGGATTAGTCTGCCTTTTACTTTAGTAAGTACTGTATTCTCTCCATTGCCAGGAGGAATATTTGAAAAAGGA-AGGAATGATTTGAACATTGTAAATAGCTAACTGAAT s mm5.chr11 24728321 1011 - 121648857 CAACAACA-TTAAATCAATGTTAGACATCATTACT-TTTAGCATTTCAAAATGACATCCTGAAATATCAGGATATGACAG-TTTGGTATGATTGGCTAATCATTTTCC--TCATGTCT-------------TTAGAC-TCACATACTCTAGATCTT-GTTATAAATAAACACACGGAAAA-GATCATGTCCAAAGTCAACATTCTTTTCAAATACTT--TGTGTT-------GTGAGTTGATTTGTAGGGTGTGCAATGGA--TTATTGTTTTGCCATGTATCTGCGTTCAGCAGGTGAATACTAGATGTTATGAATACTAGGTGAATACAGATCTTCATTCTGCTATTTAACATAGCA--------CTTTTTTTTTTAG--CAGAAATCACACATATAGGCAAAATTGGTTTTACCTTT--AAAATGATAGGCTGTGTATTTAGGTTGCATTTGTGCT---------TAGCTTAGTAATT-----TCTTTCTCTGGTGCTCACA-CTCAGATGATCGA--------GTAA------GCCTTATGCCTTA--GTTGATCAA--ATAATTGCTCTTCCC--TATAATTCCTTACAAGAATATGCAATCAATGTTCTATCTGGATCAAGCA------AACTTGTCTTTAGTGGTAAAGTAATTGGCTACATTTTGTGTACTA------AAGTTATTTTTAAAAGACTAAAG-ATATGATGTAATTGGCCGCAAGCATG--TTTTAGGTGAAA------------------GCAGTCTTGCTACTTACTAGTTTCAGGACTTG-ACTTAACA---TTTTTAGT-------CCTTGATTTTCTCTTCTACAAAA--GGGGACAA----TACTTCCAACTTTATAAA-TATCCATAAATATTTTTAGAAATCTCATGCACAGAA--ACATGTCAGACATTTCATAATAAA----TGCTTTCTTTCCTATTTTTATCTTCATGTAT-GTGGTAATTTGAGACTTAGTG---------AAATTATTTTCTAAGCAGTCCCCCTAAATAAAACTT--AA----------AGGATTAGTTTGCCATTCGTGTCAGTGTGTAGAGTGTTCTCTCCAGTGCCAAAAGGAGTATTTGAGAAAGGAGATAAATGCTTTGAATATTGT-AGTAGCCTATTGAAT s rn3.chr10 24746335 988 - 110733352 AATCAACA-TTGAATCAATGTCAGACATCATTACT-TTTAGCATTTC--ATTGACAGTTTGAAATATCAGGATATGATAG-TCTGGTCTGATTGGCTAATCATTTTCC--TCCTGTCT-------------TTAGAC-TCACACACTCTAGATCTT-GTTATAAGTAAACACACGGACA--GATCAAGTCCAAAGTCAACATTTTTTCCAAGTACTTTATGTGTT-------GTGACTTGATCTGTAGGACGTACAGTGGA-----CTATTTTGCCATGCATCTGAGTTCAGCTGCTGAATACTAGATATAG-------------AAT---TGTCTTCATTCTGTTACTAAAAATAGTACTACTTTTTTTTTTTTTTTAAGCAAAAAGTCACACATATGGGCAAAACTGGTTTTGCTTTT--AAAACAATAGGGTGCGTATTTAGGTTACGTTTGTGCT---------TAGCTTAGTAACT-------TCTCTCTAGTGCTCACA-CTCAGATGATTGA--------GTGA------GCCTTCTATCTTA--GTTGATCAAATATAATTGCTCTTCCC--TATAATTCCTTACAAGAATATGCAATCATTGTTCTATCTAGATCAAACA-----AATATTGTCCTTAGTGGTAGAGTAATTGGCTACATTTTGTGTGCTA------ACGTTATCTTAAAAAGGCTAAAG-ACGTGATGTAATTGACCGAGAACAAG--TTGTAGGTGAAA------------------GTGTTCTTGCTGCTTACTAGTTTAAGGACTTTCACTTAACA--TTTTTTC---------CCTTGATTTTCTCTTGTACAAAA--GGGGACAA----TTCTTTCAACTTTATAAACTATTCATAAACATTTTTAGAAGTCCCATGCACAGAA--ACA---CGGACATTTAA-----------TGTTTTCTTTCCTATTC-----TTCATATATTGTGGTAATTTGAGAGTTAGTG---------AAATTACTTTCTAAGCAGTCCCCCTAGATAAAACTT--------------AGGATTAGTTTGCCATTCATATCAGTCAGAAGAGTAGTCTCTCCAGTGCCGAAAGGAGTATTTGAGAAAGGAAACGAATGCTTTGAACATTTGTAATAGCTTATTGAAT s canFam1.chr9 16594293 1070 + 53642819 CAAGAACATTTTGAACAGTGTCAG-TGTCATTGCTTTATGGCATTCCAAAATGACAGTTTAAAATATTGGGATATAAAAGTTTTGGAATGATTGCCTACTTACTTTATAGTCATACTATGTCTTTAATTAGTTAAAT-TCTCATGATCTAGATCCTGGTTATAAATAGGCACTTTAAAAG-GATCA-GTTAAAAGTCAACATTTTTC-----TGGTT--GTTTTTGGAGGGGGGGATTTAATTTGTAAAAT-TAGAATGGTA-TTATTATTTTGTCATGCATCTGAATTTAGTAGATGACAAATAGATATTA------------------TAATCTTTTTTCTGTGAC--GAAAGTAGG--------TATATATACTCAT--AAAACTCCTC---TTTTGTCTAGTTTGGTTTTGCCCTTATACAACAATAGAATATATATTCAGGTTGCATTTTTATTTGCATTTAGTAA-TTATTGAATACATGTATTTCTTTAATATTATCATTTCAAATGATTGAG-------GTGACTAAGTTTTTTATTTCCCTTTGCCAGCAAA--ATCATTGATCTTCCCTGTATGGTTCCTTACAAAAGTATGGAATCAGTGTTCCATTTGTATTGAACAGATAAGGTTTTATCC-TAATCATAGAGTAACTGGC-------------------ATGAAGTCC-TCTAAATGAACCAATTTgtatggcatca-tggcagagagcatgaattctggattaaacaggcctgaatttttatgtcattcttgctacttactaattgtgtgac----cttaagcaagttatttaacttttcagcctcagtttccttatctgaaaaaatggagaccataCCTACTTACAAGTTTCTAAA-TA-----------TTTTTAAAGCACCATGTACCGTA--GCATGCTATACATTTAATAATAAATGTTAATTTCCTTTCCTGTTTTTATCTTTATGTAT--TGGTGATTAGAGATTAAGTTCATAAAGTTAAAGAACTTTCTAAGCAGTCACCCTAAATATGATGT-TAAGGTTTACTTTAGGCTTAGTTTGCCATTTACTTTAGTAAATACTGTATTCTCTTCATTGCTTGGAGAAGTGTTTGAGAAAGGA-AAGAATGATTTGCATATTCTAAGTAGTTAACTAAGT a score=15644.0 s hg17.chr17_random 869845 28 + 2618010 ATAGTGTCTTGAGGACATA-TTTTTGGTA s panTro1.chr19 20323066 28 - 82489036 ATAGTGTCTTGAGGACATA-TTTTTGGTA s mm5.chr11 24729332 27 - 121648857 GTAGTGTCTTGAGGGCATA--TTTTGGTA s rn3.chr10 24747323 26 - 110733352 ATAA-GTCTTGAGGGCATA--TTTTGGTA s canFam1.chr9 16595363 24 + 53642819 -----GTTTTAAGGACATATTTTTTGATA s danRer1.chr11 6186134 28 + 27258617 ACAGCTTCCTGACGATAGA-TGAATGGCA a score=804.0 s hg17.chr17_random 869873 7 + 2618010 -ACTG-TGT-- s panTro1.chr19 20323094 7 - 82489036 -ACTG-TGT-- s mm5.chr11 24729359 7 - 121648857 -CCTG-TAT-- s rn3.chr10 24747349 7 - 110733352 -CCTA-TGT-- s canFam1.chr9 16595387 8 + 53642819 -ACTTCTAC-- s galGal2.chrUn 27909130 7 - 165033910 -ACTG-TGC-- s danRer1.chr11 6186162 10 + 27258617 TTCTA-TGTTA a score=274594.0 s hg17.chr17_random 869880 169 + 2618010 TTAACATCTCCATAAAAGTGTTTTTTATTTATCTTCAATCACAGGTACGGGAACCTTAAAGATAGATTTTGTTGGAGAGCTGAATGACAAAATGAAAGGTTTCTATAGAAGTAAGTATACTACCCCTTCTGGAGAGGTGCGCTATGCTGCTGTAACACAGTTTGAGGTA s panTro1.chr19 20323101 169 - 82489036 TTAACATCTCCATAAAAGTGTTTTTTATTTATCTTCAATCACAGGTATGGGAACCTTAAAGATAGATTTTGTTGGAGAGCTGAATGACAAAATGAAAGGTTTCTATAGAAGTAAGTATACTACCCCTTCTGGAGAAGTGCGCTATGCTGCTGTAACACAGTTTGAGGTA s mm5.chr11 24729372 164 - 121648857 TTAACATGTCAATAAAAAGGTC-----TTTATCTTCAATCACAGGTACAGGAACCTTAAAGATAGATTTTGTTGGAGAGCTGAATGACAAAATGAAAGGTTTCTATAGAAGCAGATACACCACCCCTGCCGGCGAGGTGCGCTATGCTGCTGTCACACAGTTTGAGGTA s rn3.chr10 24747358 168 - 110733352 TTAAAATGTCAATAAAAAGATC-TGTATTCATCTTCAATCACAGGTACAGGAACCTTAAAGATAGATTTTGTTGGAGAACTGAACGACAAAATGAAAGGTTTCTACAGAAGTAGATATACCACCCCCGCCGGCGAGGTGCGCTATGCTGCTGTAACACAGTTTGAGGTA s canFam1.chr9 16595395 169 + 53642819 TTAATATCTATATTAAAGTGGTTTTCATTCATCTTCAATCACAGGTACAGGAACCTTAAAGATAGATTTTGTTGGAGAGCTGAATGACAAAATGAAAGGTTTCTATAGAAGTAAATATACTACCCCTTCTGGAGAGGTGCGCTATGCTGCTGTCACACAGTTTGAGGTA s galGal2.chrUn 27909137 162 - 165033910 ----TGTACCCATACCAATGTC---CAATCTGCTTCTATTTCAGGGACGGGAACGCTGAAGATAGACTTTGTAGGGGAGCTGAATGACAAAATGAAAGGTTTTTACCGAAGTAAATATACCACCCCTACTGGAGACACACGCTATGCTGCTGTCACTCAGTTTGAGGTA s fr1.chrUn 199211681 168 - 349519338 TGAACATTACTATGTAACTGTTCTCTGTACGTGTGCTG-CACAGGCTCTGGAACACTGAAGATAGACTTTGTTGGAGAGCTTAATGACAAGATGAAAGGATTCTATAGAAGTAAATATACAACTTCTGCTGGAGAGATCCGCTACGCTGCTGTCACACAGTTTGAGGTA s danRer1.chr11 6186172 157 + 27258617 TGTGCCTTTTAAAAAAAGAACT---------TCTTGTTTTTCAGGTTCGGGATCATTGAAAATAGACTTTGTTGGAGAGCTGAATGACAAAATGAAAGGCTTCTATAGGAGTAAATA---CTCTTCTTCGGGTGAAGTCCGCTATGCTGCCGTCACACAGTTTGAGGTA a score=-13219.0 s hg17.chr17_random 870049 34 + 2618010 -------------TGGGTTATTCTTC---TCTAAAATAT----------TATTAT--------------------------------------------TCTTA s panTro1.chr19 20323270 34 - 82489036 -------------TGGGTTATTCTTC---TCTAAAATAT----------TATTAT--------------------------------------------TCTTA s mm5.chr11 24729536 31 - 121648857 -------------TGCATGGCTGTTG---TCACAAA-------------TGCTAT--------------------------------------------TCTTA s rn3.chr10 24747526 27 - 110733352 -------------TGTATGGC---TG---TCACTAA-------------TGCTAT--------------------------------------------TCTT- s canFam1.chr9 16595564 73 + 53642819 -------------TAG--TATTTTTC---TCTAAAA-------------TGTTATGATCTTAAAAAAATAAAAAGGAAAAAAATAATAAAATGTTATGATCTTA s galGal2.chrUn 27909299 37 - 165033910 -------------TGGGCTGTATTTCTGTTTTCAAGGAA----------TGTCAT--------------------------------------------TCTTA s fr1.chrUn 199211849 51 - 349519338 AAGTGACGGGGAGTGGGATGTTTGTC---TTTTGGGAATGTTTAGCTCATGTTA-------------------------------------------------- a score=-1583.0 s hg17.chr17_random 870083 9 + 2618010 ---AATTAGGCA s panTro1.chr19 20323304 9 - 82489036 ---AATTAGGCA s mm5.chr11 24729567 9 - 121648857 ---GTTTTTTTA s rn3.chr10 24747553 4 - 110733352 --------GGCA s canFam1.chr9 16595637 9 + 53642819 ---AAGTAGATA s fr1.chrUn 199211900 12 - 349519338 ACCTACTACTCA a score=-120.0 s hg17.chr17_random 870092 5 + 2618010 TTCTG------- s panTro1.chr19 20323313 5 - 82489036 TTCGG------- s rn3.chr10 24747557 5 - 110733352 TTTTA------- s canFam1.chr9 16595646 5 + 53642819 TTCTG------- s fr1.chrUn 199211912 12 - 349519338 TTTTATGTTGCG a score=9213.0 s hg17.chr17_random 870097 51 + 2618010 ACAAAGGTGTG-TTTATTATGTGGGGTGATTATTTGAGGCTAGGTGCCCTTG s panTro1.chr19 20323318 52 - 82489036 ACAAAGCTGTGTTTTATTATGTGGGGTGATTATTTGAGGCTAGGTGCCCTTG s canFam1.chr9 16595651 50 + 53642819 ACAAAG-TGTGTTCCATTAT-TTGCATGATTATTTCAGGCTAGGTGCCTTTG s fr1.chrUn 199211924 41 - 349519338 ACAAAAACATTTTGCA-----------GATATTTTGAATCTCGGTGGTTTTA a score=10915.0 s hg17.chr17_random 870148 50 + 2618010 GCCATGATTGTATTCACAATTTTAGAATTTTTATTTTATATTTAGCCATT- s panTro1.chr19 20323370 50 - 82489036 GCCATGATTGTATTCACAATTTTAGAATTTTTATTTTATATTTAGCCATT- s canFam1.chr9 16595701 51 + 53642819 GCCGTAATTATATTCATGATTTTGGAATTTTTATTTTATATTCAGCCAGTT a score=1750.0 s hg17.chr17_random 870198 12 + 2618010 ATCTCTATAGAA-- s panTro1.chr19 20323420 12 - 82489036 ATCTCTATAGAA-- s mm5.chr11 24729922 12 - 121648857 ACCTTTAAAAAA-- s canFam1.chr9 16595752 14 + 53642819 ATCTCCTTAATAGA a score=20867.0 s hg17.chr17_random 870210 57 + 2618010 AGGAGGGAATTAAGGGTATGGGTTGGGGAATGATTATATACAGTTA--TACACACAGAC s panTro1.chr19 20323432 57 - 82489036 AGGAGGGAATTAAGGGTATGGGTTGGGGAATGATTATATACAGTTA--TACACACAGAC s mm5.chr11 24729938 57 - 121648857 AGGAGGGAATGAGAGATATAGGTTAGAGAATGATAATATATTCCTG--TGTATATACAT s rn3.chr10 24748173 59 - 110733352 AGGAGGGAATGAGGGCTATAGGTTGGAGAGTGCTCGTATATTCATGTCTATGTACAGAC s canFam1.chr9 16595766 50 + 53642819 GGGAGAGAATTAGGGAAGTGGACTGGAGGATGAATACGTACAT-----CACAAAC---- a score=1562.0 s hg17.chr17_random 870267 7 + 2618010 ATTCAAA s panTro1.chr19 20323489 7 - 82489036 ACTCAAA s mm5.chr11 24729995 7 - 121648857 GCCCAGG s canFam1.chr9 16595816 7 + 53642819 ACACAAA a score=0.0 s hg17.chr17_random 870274 91 + 2618010 CACACGACACATTTTGATACCTGAATTGCCTATATACTGTGTACCTTTCTTAAAATCATTCTCTTAGTATTTGACACCTATGGCTTTTCCT a score=6916.0 s hg17.chr17_random 870274 39 + 2618010 CACACGACAC---ATTTTGATACCTGAATTGCCTATA-TACTG s panTro1.chr19 20323496 39 - 82489036 CACACGACAC---ATTTTGATACCTGAATTGCCTATA-TACTG s mm5.chr11 24730002 36 - 121648857 TA----ATGA---ACTTTTACATCAGATTTGCTCTTGTTACTG s canFam1.chr9 37046473 42 - 53642819 tatatgtCACAGAATTTCAATACCTGAATTGCTTTTA-TATTA a score=3395.0 s hg17.chr17_random 870313 13 + 2618010 TGTACCTTTCTTA s panTro1.chr19 20323535 13 - 82489036 TGTACCTTTCTTA s canFam1.chr9 37046515 13 - 53642819 TGTATCTTTCTTA a score=9802.0 s hg17.chr17_random 870326 39 + 2618010 AAATCATTCTCTTAGTATTTGACACCTATGGCTTTTCCT s panTro1.chr19 20323548 39 - 82489036 AAATCATTCTCTTAGTATTTGACACCTATGGCTTTTCCT s canFam1.chr9 37046732 39 - 53642819 AAATTATACTCTTAGTATTTGACATCTGTGGCTTTTCCT a score=3916.0 s hg17.chr17_random 870365 27 + 2618010 ACAGTATTATTAGCTGTTTTCTAGAAT s panTro1.chr19 20323587 27 - 82489036 ACAGTATTATTAGCTGTTTTCTAGAAT s canFam1.chr9 16595823 27 + 53642819 ATAGCATTACTATTAATTTGGTAGGAg a score=764.0 s hg17.chr17_random 870392 8 + 2618010 TCCTTTCC s panTro1.chr19 20323614 8 - 82489036 TCCTTTCC a score=7255.0 s hg17.chr17_random 870400 68 + 2618010 TTCTTTGACATCTTTTGTTTATCTTAC--------TGTAGTATCTGTGCTGTCTTTGATTTTTTTTCTCTCTCTCT s panTro1.chr19 20323622 63 - 82489036 TTCTTTGACATCTTTTGTTTATCTTAC--------TGTAGTATCTGTGCTGTCTTTGATTTTTTTTCTCTC----- s mm5.chr11 24730375 76 - 121648857 CTCTTTTTCTTTTTATATTGACTTTTCAGGGTTTTTTTGGTTTTTTTTTTGTTGTTGGTTTTTTTTTTGTTTGTTT a score=15785.0 s hg17.chr17_random 870468 199 + 2618010 Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacatatatatat--acacacatatatatatTTGCTGTCCTACGTAGGCCAGGATGATTTTTATTTGTCAGGTATTTGCAAATTATATACATTGTTTTGAATCTGCTAGTCGTATTTTTAAGTGTTAAATCTAATTAAATTTATTTCTATAAATTTCAGTAT s panTro1.chr19 20323685 192 - 82489036 ---------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtACACATATATATATACACACACATACATATATTTGCTGTCCTACGTAGGCCAGGATGATTTTTATTTGTCAAGTATTTGCAAATTACATAAATTGTTTTGAATCTGCTAGTCGTATTTTTAAGTGTCAAATCTAAATAAATTTAGTTCTATAAATTTCAGTAT a score=14027.0 s hg17.chr17_random 870667 159 + 2618010 GGATAAAGAAACAATTCATGATATCCATTCTTATGTTTCTGCCCATATCCCTATATTGTTTGCTTGTTTGGGATAACCTAAAATTTTTTATCCAGTTTACTACTAATTTGTTTTACCTGATGTATCTTCTCTTTCAataattttatgttaccttctgtt s panTro1.chr19_random 35329684 157 - 57627672 GGATAAAGAAACAATTCATGATATCCATTCTTATGTTTCTGCCCATATCCCTATATTGTTTGCTTGTTGGGGATAACCTAAAATTTTTTATCCAGTTTACTACTAATTTGTTTTACCTGATGTATCT--TCTTTCAATAATTTTATGTTACCTTCTGTT a score=2977.0 s hg17.chr17_random 870826 17 + 2618010 tagaataatatttgcca s panTro1.chr19_random 35329841 17 - 57627672 TAGAATAATATTTGCCA s canFam1.chr9 16596725 17 + 53642819 TAAAACAAGTATTGCCA a score=179782.0 s hg17.chr17_random 870843 1109 + 2618010 cagatatttaggtttaattctgtgtttgaatgattccaatgcctttctctacccactttgaacactt---catcctggaatggttggctgatgtatgtctctaaacaattttttttttaggagaaggtatgtgggta--atgtaattcctaaacctttgcttttctgaaaaatctttcatttgcctttatacatgaccagatttactgggtat---aTAGATTTGTTGATGAAAAAAG-GTAaaaagagcaacttttgacatccagaggttgt-ctggcactcacagctagcccgtgttattctccctattagacataa----tattacagaataccaactttagacaaggctacttgagaccataataaagtgagacaaaacaagg--gatccataattttgcctaggtaca-gtacatacaggatcactatgctacccgcaaaatatcaa--acatctccatctctcagttaaaatgagtgactact-gcttctttaccaattacggttttagatttgctcta-gtctggcctccgtatagataagatttattgagatacatacccatagaattgcctcataggacttcttgcagcactcaatctagagtgaatccctgtttacttagaccctcttccaaatcatgtaaaccaaatcccaaatcgt--atagtgggttctttcttacattcttatggagacaccagtggttccctgtggtgtgagttctctcttgcc---atgagtaataggcccagctcattcaaTTGTAAGAGTAG----TACAATCAGCttacaatttttcactttcaaaagtctgtgaatattgtttccaaagtcttctacatctcactttttcaagaggaggggtcacagactaaaatgtttcttcttcctttgta-ggtaagatgttgtttcgttttgctttattttcttcctgcttgcttgttaaattatatcttgata-tcgaaaatta--aactgt-----tttttaaaccaggtgttcacttttcattgatttttgcatagtacttggtgaaccctattgatttttagattcaggtaatttttcagtgtgaaagagttttt----ctgttatatctTCACTGTGATATCCATTCCATTCCCTTCTCAGTTAATACTCAGT s panTro1.chr19 20324049 1106 - 82489036 CAGATATTTAG-TTTAATTCTGTGTT-GAATGATTCCAATGCCTTTCTCTACCCACTTTGAACACTT---CATCCTGGAATGGTTGGCTGATGTATGTCTCTAAACAATTTTTTTTT-AGGAGAAGGTATGTGGGTA--ATGTAATTCCTAAACCTTTGCTTTTCTGGAAAATCTTTCATTTGCCTTTATACATGACCAGATTTACTGGGTAT---ATAGATTTGTTGATGAAAAAAG-GTAaaaagagcaacttttgacatccagaggttgt-ctggcactcacagctagcccatgttattctccctattagacataa----tattacagaataccaactttagacaaggctacttgagaccataataaagtgagacaaaacaagg--gatccataattttgcctaggtaca-gtacatacaggatcactatgctacccgcaaaatatcaa--acatctccatctctcagttaaaatgagtgactact-gcttctttaccaattacggttttagatttgctcta-gtctggcctccgtatagataagatttattgagatacgtacccatagaattgcctcataggacttcttgcagcactcaatctagagtgaatccctgtttacttagaccctcttccaaatcatgtaaaccaaatcccaaatcgt--atagtgggttctttcttacattcttatggagacaccaggggttccctatggtgtgagttctctcttgcc---atgagtaataggcccagctcattcaaTTGTAAGAGTAG----TACAATCAGCTTACAATTTTTCACTTTCAAAAGTCTGTGAATATTGTTTCCAAAGTCTTCTACATCTCACTTTTTCAAGAGGAGGGGTCACAGACTAAAATGTTTCTTCTTCCTTTGTA-GGTAAGATGTTGTTTCGTTTTGCTTTATTTTCTTCCTGCTTGCTTGTTAAATTATATCTTGATA-TCGAAAATTA--AACTGT-----TTTTTAAACCAGGTGTTCACTTTTCATTGATTTTTGCATAGTACTTGGTGAACCCTATTGATTTTTAGATTCAGGTAATTTTTCAGTGTGAAAGAGTTTTT----CTGTTACATCTTCACTGTAATAGCCATTCCATTCCCTTCTCAGTTAATACTCAGT s canFam1.chr9 16596742 1075 + 53642819 CAGCTGTTTAGGCTTAAATCTGTGTTTCAGTTATTTCATTGCTTATCTTTAGCC-CTTTGAGCACTTCTGCATCCTGGAATGGTTGGCTGGAGTATGTCTCCAAATAATTTTCTTTA-AAGGGAGGATATGTGGGTGGTATATACTACCAGAGCCTTTGCACATCTG--AAATCTTTCATTTGCTTTAATACATGGCCAGTTTTACTGAATGTATAATAGATTTGGTGGGGGGTGgggagaaggaacagcagcccctgacatccaaaagttgtcctagcactcccagctagtc-----------tcttgtttgacataaacagcatcatagaacaccagccttagacaaggttac-tgagacgatgataaagtgaaacaaaacaagggtgcttcataatttcatctaaggtcacataaaatcaaggtcact-----------gaaataatgaacacaccctcctctcttagttaaaatgaatgactactaactactttaccaattacag-tttagtcttgctaaacagccctcctctctataggtaagatttgctgagatgtcatcccacagaattgcctcc---attttatgacagcacccaatttagagtgaatccc------ctcaattcatcct-------------gccaactcccaaattatacataataggttctttctcacacat-----------cccatggttcttcttagtgtgggttttcttttgctacaatgagtaataaacccaactt-ttcaaccataagagtAGTACATACAGTTGGCTTACAGTTTTTCTCTTTTAAACGTATATGAATGTTG-TTCCACAGTCATTCCTACCTCATTTTGTCAAGGGAAAGAAT--CAGACTGGAATATCTTTTTGCCCCTTTTAGGGTCACATATTGTTTTGTTTTGTTGTGTTTTCTTCCTGATTGCTTGTTATATTATTTCTTTGTACTTAAAAATTAAGAATTTTTACAATTTTTACACTTTTCATTAACTTTTCATTAGCTTCTGCATAGTAATTGGTGAACCCTGTTGATGTTGAGATTCAGA----TCTTCAGTATAGCCAAGTTTTTTCTCCTCCTACATTTTCACTGTGGTTCGTGCTCTGCTCTCTC--------ATAATAGGT a score=50138.0 s hg17.chr17_random 871952 324 + 2618010 TTAGCTCTAGTATCTGTCTCTCAAATTATG-TTTAATTGCTTTTATCACTTTGTCCTTTAGATATTTTCAAA------------------CTTAAATCTTGTTATC--TGTCA-----TTAATTTCCTTTAGTATAAATTCATTTCTCTACTGCTGCTGCTTCTAATTTAAATGCTTCTGTGCTGCCATTTCTTTCCTTATACTCTCCCTTCTTTTCAGATGTCTTTTTTATTCATTGATAGAATTCATTATTTATTTAATGTTTTTGAGAATGTAGTCAGCCAAGTTTCTTCTACCT--------CTTTGgtttgtttgtttgtttgtttgttcgtttgtttgtttgtttTTTAGTc s panTro1.chr19_random 35330966 311 - 57627672 TTAGCTCTAGTATCTGTCTCTCAAATTATG-TTTAATTGCTTTTATCACTTTGTCCTTTAGATATTTTCAAA------------------CTTAAATCTTGTTATCTATGTCA-----TTAATTTCCTTTAGTATAAATTCATTTCT---CTGCTGCTGCTTCTAATTTAAATGCTTCTGTGCTGCCATTTCTTTCCTTATACTCTCCCTTCTTTTCAGATGTCTTTTTTATTCATTGATAGAATTCATTATTTATTTAATGTTTTTGAGAATATAGTCAGCCAAGTTTCTTCTGCCT--------CTTTGgtttgtttgttt------------gtttgttcgtttgtttTTTAGTc s canFam1.chr9 16597817 344 + 53642819 GTATATCTAATGTCTGTTGCTCAGATGAAGTTTTGATGGCTTTCATCACTCTGTTCTTCTTATATCTTAGAAACTTTTTTTTTAGATACTTTTAAATCTTGTTATCCATGTTACTCACTTAATTTCCTTTGGTATAAATTCATTTCTTTACTGCTGCTGCTCCTAATTTCAATTTTTCTGTGCTATCATTTCTTTCCTTACACTCTA----CTTTTCAGATGTTTTATGTATTCTCTGAATGAATTCATTATTCATTCAACTTCTTTGAGAGTGCAGGCAGCCATCTAACATTTTCCTAGGAGAAACTTTTTTCCAGAAGTATGT----------GCTTCCTCTACCTCTATATAATT a score=25108.0 s hg17.chr17_random 872276 277 + 2618010 ggagccttgctctgtcgcccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcttcccaggttcgagccattctcctgcctcagcctcccgagtagctgggattacaggcatgtgtcaccatgcctggcttatttttgtatttttagtagagacggggtttcaccatgttgaccaggctggtctcgaactcctgacctcaggtgatccgcccacctcggcctcccaaagtgctggaattacaagcatgagccactgcacccagtc s panTro1.chr19_random 35331277 276 - 57627672 ggagccttgctctgtcgcccaggctggagttcagtggtgcaatcttggctcactgcaacctccacctcccaggttcgagccattctcctgcctcagcctcccgagtagctgggattacaggcacatgtcaccatgcctggcttatttttgtatttttagtagaaacggggtttcaccatgttgaccaggctggtctcgaactcctgacctcaggtgat-cgcccacctcggcctcccaaagtgctggaattacaagcatgagccactgcacccagcc a score=8464.0 s hg17.chr17_random 872553 51 + 2618010 TGTTGTTTCTTTTTATGATACAGTATCTTG-------------------TCATTGGTTCCATTTTATTTA s panTro1.chr19_random 35331553 51 - 57627672 TGTTGTTTCTTTTTATGATACAGAATCTTG-------------------TCATTGGTTCCATTTTATTTA s canFam1.chr9 16598161 70 + 53642819 TACTCCTGCTTTTCATGGTACAGAATCTTGAATTGGTTCTTTTTTTTTTTCCTTTGTTCTATTTTGTTTA a score=2420.0 s hg17.chr17_random 872604 26 + 2618010 CTAAATAAATGGAAAATTCTGTTTAC s panTro1.chr19_random 35331604 26 - 57627672 CTAAATAAATGGAAAATTCTGTTTAC a score=14779.0 s hg17.chr17_random 872630 69 + 2618010 TGAAGTGTCTTTCCTTTATAACTGATACCCTGCAGAACCCCTAAGTTTTATTTTGCTTTCATAAGGTTG s panTro1.chr19_random 35331630 69 - 57627672 TAAAGTTTCTTTCCTTTATAACTGATACCCTGCAGAACCCCTAAGTTTTATTTTGCTTTCATAAGTTTG s canFam1.chr9 16598418 69 + 53642819 TAAAATTTCTTTCTTTTATAACTGGTATTCTACTGAACCACTAAACTTTATTTTGCTTTAATGAGTTTG a score=100.0 s hg17.chr17_random 872699 1 + 2618010 C s canFam1.chr9 16598487 1 + 53642819 C a score=300.0 s hg17.chr17_random 872699 1 + 2618010 C s panTro1.chr19_random 35331699 1 - 57627672 C s mm5.chr11 24732253 1 - 121648857 C a score=152524.0 s hg17.chr17_random 872700 432 + 2618010 TCTTTTTTAAATTTTTAATGAAAGAGTAAGGACTC---AAGTAGGTCAAGTGGCGACAGTTTTATGTGTAG--CATATGGAAGTGCCATTAAATGAATGACCTGTCTTGAATTGATAGAGCATCTGTCTTTATTCCCATTGCTGCCATTCCAGATAAAGAACAAAGCACATCAAAGAT--TGAGaatatttttattt----------------------------------------ttaat-----tcaaaaataaaaGCCAGAGAGGCAACTTACCAT-GTTTTCCCAACTTT------------------GA--------ATTCTTATAGCATACTC-TTTACTGTTCTGTGCTCTGTGTTGTGTTAACATTATTGATTTGAAGGCATTTGCATTAAATTTG-----------AAATGTTAAAATGTAAACAAAAATTTAGTTGTAAATAATTATA-----ATATATTGTTAAAATCCATAGCAGACACTGTTCCTGGAT-------------------------ATTTGCTGGAATGGCAGTGGTAGCA s panTro1.chr19_random 35331700 430 - 57627672 TCTTTTTTAAATTTTTAATGAAAGAGTAAGGACTC---AAGTAGGTCAAGTGGCGACAGTTTTATGTGTAG--CATATGGAAGTGCCATTAAATGAATGACCTGTCTTGAATTGATAGAGCATCTGTCTTTATTCCCATTGCTGCCATTCCAGATAAAGAACAAAGCACATCAAAGAT--TGAGaatatttttattt----------------------------------------ttaat-----tcaaaaataaaaGCCAGAGAGGCAACTTACCAT-GTTTTCCTAACTTT------------------GA--------ATTCTTATAGCATACTC-TTTACTGTTCTGTG--CTGTGTTGTGTTAACATTATTGATTTGAAGGCATTTGCATTAAATTTG-----------AAATGTTAAAATGTAAACAAAAATTTAGTTGTAAATAATTATA-----ATATATTGTTAAAATCCATAGCAGACACTGTTCCTGGAT-------------------------ATTTGCTGGAATGGCAGTGGTAGCA s mm5.chr11 24732254 454 - 121648857 CCATTTTTAATTTTT-----ATAGAATACTGTCTC--TAAGTAGGTCAGATAGTGA-GTTCTGATGTATAC--CATATAGACAGGCCATTAAATAAATGACTTGTCTCGAATTTATAGAGCATCTGTATTTAT---------TGTCATTCTAGATTAAGAAC--AGTGTATCAGAGAC--TTGGAATATTTTTATTTATTTATTATTAT-----ACATGTTTTTATTACTGTTTTGCTTATT-----GTTAATTTAAAACTCAGAGGCACCGTCGCTCATAATTTTCCCTAATTT------------------GA--------ATCCTTAAAGCTTGGCA-ATAAATGGTCTGTGCTTTGAGTTATATATGCTGTATTAG--TGAAGCCGTTCATGTTAAATCTG---AATGTTATAAGTATTTTAATAAAAGCAAAAATATAATTACAAATAATTCT-------CATTTTGTCATGATCTGCAGCAGA-ATAGTTGACAAAT-------------------------AACTGCTAATGTGACATTGGTAGC- s rn3.chr10 24750212 467 - 110733352 TCCCATTTTAATTTT-----AAAGAATGCTGTCTCTCTAAGTAGGTCAGATAGTGA--GTTCGATGTGTAG--CATATAGACAGGCCAGTAAGTAAACAGCCTGTTTCACATTTCCAAAGCATCTGTATTTAT---------TCTCATTCTAGATAAAGGACAGAGTGCATCAGAGAT--TGGGAATATTTTTACTTATTTATTATATTACCCAACATGTTTTTATTATTGTATTGTTTATTGTTAATTTAAAATAAAAACCAGAGGCACTTTCTCTCAT-ATTTTCCCTAATTT------------------GA--------ATCCTTACAGCATGGCA-TTAAATGGTCTGTGCTTTGGATTGTGTCTGCTGTGTTAG--GAAAGCTGTTCATATTAAATCTG--AAATGTTA-AAATATTTTAATAAAAGCAAAAATATAATTACAAATAATTCTC-----AT-TTTTGTCGTGATCTGCAGCAGG-ATAGTTGACAAAT-------------------------CATTGCTAAGGTAACAGTGGTAGC- s canFam1.chr9 16598488 492 + 53642819 TCTTTCTTTACTTTTAAAGAAAAAAAAGAGGTCTC----TTTAGGTCAAGTGGTGATAGTTTTATGTGTAGTATATATGGAAATGCCATTAAACAAATGATGTCTTTAGAATTGAAAGAGCATCTGTCTTTAT-TTCTTTGCTATCATTTCAGATGAAGAACAAAGTACATCAGAGATTCTGGAAATATTT----------------------------------------------TTGTT-----TTTGAAATAAAAGCCAGAGAGGCAACCTATTCT-ATTTTCTCAGCTATCCTTCTCAGTAAGGATAGGAGGCAACCTATCCTTACAGTGTACTCGTTGACCTTCCTATGCTCTGTGTTTTGT-AACGTTACTGC--TGAAGCCATTTACATTGAATTTTTGAAATGTTG-GAATGTTTTGTTAAAAGTAAAAATGTAATTCTGAATTATTCTAATACTATATATTGTTAAGATCTACAGCAGACCTAGTTCTTGGATTATTGTTTGTTTTTGTTTGTTTTTGCATTGTTGATGTGGCAAGGATAGTA a score=26975.0 s hg17.chr17_random 873132 70 + 2618010 AGTGTTGTCTTTTCTT--TCTAGTTAATGCCTAGCTTGTTGCCTGGCACTGAAGAGAAAGTAAATATTTGAA s panTro1.chr19_random 35332130 70 - 57627672 AGTGTTGTCTTTTCTT--TCTAGTTAATGCCTAGCTTGTTGCCTGGCACTGAAGAGAAAGTAAATATTTGAA s mm5.chr11 24732708 68 - 121648857 AGCATTATGTTTCCTT--TGTAGTCAGCACTTAGCTCATTACCTGACA--GAATGGATAGTAAATCTCTGAA s rn3.chr10 24750679 66 - 110733352 AGCATTATGTTTAC----CGTAGCCAGCACTGAGCTCATTACCTAGAA--GAACAGAAAGTAAATACTGGAA s canFam1.chr9 16598980 70 + 53642819 AGCCTCAGGTTTTCTC--TGTAGTCACTGCCTAGTGTGTTGCCTGGCATGGAGTAAGAAGTAAACAAGTGAA s fr1.chrUn 199214471 72 - 349519338 AGTGTTTTTTCTTTTTACTAAAGATAGTCACGAGTTCTGTATTTTTAAATGGAGCCAGTATCAACATTGAAG a score=-1089.0 s hg17.chr17_random 873202 4 + 2618010 ---CAAG s panTro1.chr19_random 35332200 4 - 57627672 ---CAAG s mm5.chr11 24733080 4 - 121648857 ---TAAA s fr1.chrUn 199214543 4 - 349519338 TTTT--- a score=-611.0 s hg17.chr17_random 873202 4 + 2618010 ---CAAG s fr1.chrUn 199214543 4 - 349519338 TTTT--- a score=2333.0 s hg17.chr17_random 873206 6 + 2618010 GGAATG s panTro1.chr19_random 35332204 6 - 57627672 GGAATG s mm5.chr11 24733084 6 - 121648857 AAAAGA s canFam1.chr9 16599050 6 + 53642819 GGAATG s fr1.chrUn 199214547 6 - 349519338 TAAATG a score=0.0 s hg17.chr17_random 873212 6 + 2618010 AATGAA a score=657.0 s hg17.chr17_random 873212 3 + 2618010 AAT s panTro1.chr19_random 35332210 3 - 57627672 AAT s mm5.chr11 24733090 3 - 121648857 AAG s canFam1.chr9 16599056 3 + 53642819 GAT a score=1440.0 s hg17.chr17_random 873215 3 + 2618010 GAA s panTro1.chr19_random 35332213 3 - 57627672 GAA s mm5.chr11 24733093 3 - 121648857 AAA s rn3.chr10 24751095 3 - 110733352 GAA s canFam1.chr9 16599059 3 + 53642819 GAT a score=-2641.0 s hg17.chr17_random 873218 12 + 2618010 TGACAGAGG----------------GAA s panTro1.chr19_random 35332216 12 - 57627672 TGACAGAGG----------------GAA s mm5.chr11 24733096 28 - 121648857 AAAGAGAGAAATAATTGACTAATACAAA s rn3.chr10 24751098 10 - 110733352 TGACAGC------------------AAA s canFam1.chr9 16599062 12 + 53642819 AGAAATAAG----------------ACG s fr1.chrUn 199214553 12 - 349519338 TGACAATGT----------------AAG a score=109386.0 s hg17.chr17_random 873230 127 + 2618010 ATGGCGACTGCTTTATGAAATAACTTGTTAGGTTAATTCTAAGGTATTTATAT---TTCATATTC-----TTTTCTTAAGGCTACTGATGCCCGAAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s panTro1.chr19_random 35332228 127 - 57627672 ATGGTGACTGCTTTATGAAATAACTTGTTAGGTTAATTCTAAGGTATTTATAT---TTCATATTC-----TTTTCTTAAGGCTACTGATGCCCGAAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s mm5.chr11 24733124 130 - 121648857 ACAGCAATGATTTCATGAAACAACCTCTGAGATTAATTAAATGGTATTGATATGAGTTTATATTT-----TTTTCTTAAGGCTACTGATGCCCGAAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s rn3.chr10 24751108 118 - 110733352 ACAGCAATGATTTCATGAAACAATCTCCGAGGTTAATTAAATGGTGTTTATGT-----------------TTTCCTTAAGGCTACTGATGCCCGAAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s canFam1.chr9 16599074 126 + 53642819 ATGACAGTTACTTCATGAAATAGTT-----GGTTAATTCGGTAGGatttattt----ttatatttttatattCTTTTAAGGCTACTGATGCCCGGAGGGCTTTTCCTTGCTGGGATGAGCCTGCTATCAAAGCAA s galGal2.chrUn 27910148 106 - 165033910 ATTGCAGCAGCTTCCTG---TGATTTCCTGGGTTAAT---------GTTCTTT-----------------CTTCTTTCAGGCTACTGATGCTCGCAGAGCTTTCCCTTGCTGGGATGAGCCTGCTATTAAGGCAA s fr1.chrUn 199214565 107 - 349519338 ---ATGTGGAACCCAGGAACTAACT-----AGTGTCT------GTGCTCACCC---ACC-----------CACACACCAGGCCACGGATGCCCGCAGAGCTTTCCCCTGCTGGGATGAACCAGCCATTAAAGCCA a score=118424.0 s hg17.chr17_random 873357 59 + 2618010 CTTTTGATATCTCATTGGTTGTTCCTAAAGACAGAGTAGCTTTATCAAACATGGTATGT s panTro1.chr19_random 35332355 59 - 57627672 CTTTTGATATCTCATTGGTTGTTCCTAAAGACAGAGTAGCTTTATCAAACATGGTATGT s mm5.chr11 24733254 59 - 121648857 CTTTTGATATCTCGCTGGTTGTGCCTAAAGACAGAGTGGCTTTATCAAATATGGTATGT s rn3.chr10 24751226 59 - 110733352 CTTTTGATATCTCGTTGGTTGTGCCTAAAGATAGAGTGGCTTTATCAAATATGGTATGT s canFam1.chr9 16599200 59 + 53642819 CTTTTGATATCTCATTGGTCGTTCCTAAAGACAGAGTAGCTTTATCAAACATGGTATGT s galGal2.chrUn 27910254 59 - 165033910 CTTTTGATATTTCATTGGTGGTTCCTAAAGACAGAGTAGCTTTGTCAAATATGGTAAGT s fr1.chrUn 199214672 59 - 349519338 CCTTTGATATCACCCTAATAGTTCCCAAGGAGAGAGTAGCCTTGTCAAATATGGTACGT s danRer1.chr11 6192587 59 + 27258617 CTTTTGACATCACCCTCATCGTCCCAAAGGACAGAGTAGCCTTGTCGAATATGGTATGT a score=3090.0 s hg17.chr17_random 873416 2 + 2618010 AT s panTro1.chr19_random 35332414 2 - 57627672 AT s mm5.chr11 24733313 2 - 121648857 AT s rn3.chr10 24751285 2 - 110733352 AT s canFam1.chr9 16599259 2 + 53642819 AT s fr1.chrUn 199214731 2 - 349519338 AT s danRer1.chr11 6192646 2 + 27258617 GT a score=38533.0 s hg17.chr17_random 873418 141 + 2618010 GTGTTTATAAGTTTATCTAAAATTTTAATAGGC-TTTAgcagatttagtttgctgattagatgggataatatgaaaccacctaccacagtgctggtatattataggaacataaataatagttttcttTATTTTCAATAAGCC s panTro1.chr19_random 35332416 141 - 57627672 GTGTTTATAAGTTTATCTAAAATTTTAATAGGC-TTTAgcagatttagtttgctgattagatgggataatatgaaaccacctaccacagtgctggtatattataggaacataaatattagttttcttTATTTTCAATAAGCC s mm5.chr11 24733315 127 - 121648857 GTGCTAATAAGC----------TTTTAATAG---TCTGGTATATTTGCTCTCTTGATTAAGTAGGA-GATGTGAAGTCACCTAGCATAGTGCTTGCTGCTAACAGAAGCATTGTCCCTGG-TCCCTTTAGTTTCCGTAAGTC s rn3.chr10 24751287 128 - 110733352 GTGCTAATAAAC----------TTTTACTAGTC-TCTGGTGACCCTGCTTTGTTGATTAAGTAGGA-TACATGGAACCACCCAGCATAACGCCTACTACAGGCAGAAGCATCGTCTTTCA--GCCTTTGTTTTCAGTAAGTC s canFam1.chr9 16599261 108 + 53642819 GTGTTTGTAAGTATATTTAAATTTTGAATAAGTGTTTAGAACATTTAGTTTGCTGGTTAGATGTAATAGGATGAAACCACTTAGCACAATTC----------------------------------TTATTTTCAGTAAACT a score=2653.0 s hg17.chr17_random 873559 8 + 2618010 TCTTTTTC s panTro1.chr19_random 35332557 8 - 57627672 TCTTTTTC s mm5.chr11 24733442 8 - 121648857 CTGTTTTC s rn3.chr10 24751415 8 - 110733352 CTGTTTTC a score=302.0 s hg17.chr17_random 873567 2 + 2618010 TT s panTro1.chr19_random 35332565 2 - 57627672 TT s rn3.chr10 24751423 2 - 110733352 CT a score=12554.0 s hg17.chr17_random 873569 140 + 2618010 TCTt--tttttttttttctgtagagttggggtctcattatgttgcccaggctggtctcaaactcctggggtcaatctgtcttcctgcctcagcctcccaaagtgctgggattagaggcatgagccaccatgcccagccAAGA s panTro1.chr19_random 35332567 142 - 57627672 TCTTTCtttttttttttctgtagagttggggtctcattatgttgcccaggctggtctcaaactcctggggtcaatctgtcttcctgcctcagcttcccaaagtgctgggattacaggcatgagccaccatgcccagccAAGA a score=300.0 s hg17.chr17_random 873709 1 + 2618010 C s panTro1.chr19_random 35332709 1 - 57627672 C s rn3.chr10 24751425 1 - 110733352 C a score=4521.0 s hg17.chr17_random 873710 32 + 2618010 CTCTTTTTCTTGATAGCTTTATTTTTGGAGGA s panTro1.chr19_random 35332710 32 - 57627672 CTCTTTTTCTTGATAGCTTTATTTTTGGAGGA s rn3.chr10 24751426 32 - 110733352 AGTTGCATTCTGATGGTTTTCCTCCTCGAGGA s canFam1.chr9 16599369 27 + 53642819 CTCTTTTTTTAAATTGCCTTA--TCTGGA--- a score=2047.0 s hg17.chr17_random 873742 25 + 2618010 TTTTGTCCTTGTCAAATTCCTTGTT s panTro1.chr19_random 35332742 25 - 57627672 TTTTCTCTTTGTCAAATTCCTTGTT s canFam1.chr9 16599396 15 + 53642819 ----------GTTTCCTTCCTCGTG a score=406.0 s hg17.chr17_random 873742 35 + 2618010 TTTTGTCCTTGTCAAATTCCTTGTTAAATACATTT s canFam1.chr9 16599396 25 + 53642819 ----------GTTTCCTTCCTCGTGGAAGAAATTT a score=1675.0 s hg17.chr17_random 873767 10 + 2618010 AAATACATTT s panTro1.chr19 20326401 10 - 82489036 AAATACATTT s canFam1.chr9 16599411 10 + 53642819 GAAGAAATTT a score=0.0 s hg17.chr17_random 873777 9 + 2618010 ATAAGATTA a score=273.0 s hg17.chr17_random 873777 3 + 2618010 ATA s panTro1.chr19 20326411 3 - 82489036 ATA a score=0.0 s hg17.chr17_random 873777 3 + 2618010 ATA a score=846.0 s hg17.chr17_random 873780 3 + 2618010 AGA s panTro1.chr19 20326414 3 - 82489036 AGA s rn3.chr10 24751458 3 - 110733352 AGA a score=819.0 s hg17.chr17_random 873783 3 + 2618010 TTA s panTro1.chr19 20326417 3 - 82489036 TTA s mm5.chr11 24733835 3 - 121648857 TTA a score=0.0 s hg17.chr17_random 873783 3 + 2618010 TTA a score=-441.0 s hg17.chr17_random 873786 3 + 2618010 --TCT s panTro1.chr19 20326420 3 - 82489036 --TCT s mm5.chr11 24733838 3 - 121648857 --TCT s canFam1.chr9 16599421 3 + 53642819 CAT-- a score=-429.0 s hg17.chr17_random 873786 3 + 2618010 --TCT s canFam1.chr9 16599421 3 + 53642819 CAT-- a score=7920.0 s hg17.chr17_random 873789 36 + 2618010 ACTTCTTTTAATTTAGAGAGGTAAATTGACAAGTTT s panTro1.chr19 20326423 36 - 82489036 ACTTCTTTTAATTTAGAGAGATAAATTGACAAGTTT s mm5.chr11 24733841 36 - 121648857 ACTTTTTAAAACGGAAGGACATAAATAAGGAACATT s rn3.chr10 24751461 30 - 110733352 ACTTCTCCTAA------GAGAGATACTGGCAAGTTT s canFam1.chr9 16599424 35 + 53642819 ACAAACTTTAATTTGGAAAACTAAGT-GACAAGTTT a score=1638.0 s hg17.chr17_random 873825 3 + 2618010 AAT s panTro1.chr19 20326459 3 - 82489036 AAT s mm5.chr11 24733877 3 - 121648857 AAT s canFam1.chr9 16599459 3 + 53642819 AAT a score=3096.0 s hg17.chr17_random 873828 29 + 2618010 AGATTTATAGTAACTAAAAGCAAAAGTCT s panTro1.chr19 20326462 29 - 82489036 AGATTTATAGTAACTAAAAGCAAAAGTCT s canFam1.chr9 16599462 22 + 53642819 ----AAATATTGTCTGAA---AAAAATCT a score=28464.0 s hg17.chr17_random 873857 312 + 2618010 TGggctggatatggtggcttacacctgtcatcccagcactttgggaagtcaaggtaggcagatcgcttgaggtcaggagttgaagaccagcctggccaacatggtgaaatcctgtccttactaaaaatacaaaaattatctgagtgtggttgcacacacctgtagtcccagctacttgggaggctgaggtgggaggatcacttgaacccaggaagcggaggttgtagtgagctgagatcacaccactgcactccagcctgggtgacagagccagaccctatctcagaaaaaaaaagaaaaaaaaaagaaaaa s panTro1.chr19 20326491 311 - 82489036 TGggctggatatggtggcttacacctgtcatcccagcactttgggaagtcaagttaggcagatcgcttgaggtcaggagttgaagaccagcctggccaacatggtgaaatcctgtccttactaaaaatacaaaaattatctgagtgtggttgcacacacctgtagtcccagctagttgggaggctgaggtgggaggatcacttgaacccaggaagcggaggttgtagtgagctgagatcacaccactgcactccagcctgggtgacagagccagaccctatctcagaaaagaaaag-aacaaaaaagaaaaa a score=4719.0 s hg17.chr17_random 874169 29 + 2618010 GGTCTTGACTTATTAAATGTCATAAGAAa s panTro1.chr19 20326802 29 - 82489036 GGTCTTGACTTATTAAATGTCATAAGAAa s canFam1.chr9 16599484 27 + 53642819 GACTTT--CTCATTAAATGCCAAAAGATA a score=52279.0 s hg17.chr17_random 874198 559 + 2618010 gccaggtacagtgactcttgcttgtaatctcagtgctttgggaggctaaggcaggaggattgcttgaggccaggagtttgacaccagtctgggcaacatagtgagacctcatttctacaaaagatttaaaacttaaaagttagccaggtatggtggcaggtgtctgtaatcctaactacttgggaggctaatgtgggaggatctctcgaacttaggagtttgaggctacagggagccatgattgtgccactgtattccagcctgggtgacagaacaagaccccatctcttaaaaaaaaaaaaTAggccaggcatggtggctcatacctgtaatcccagcacttcaggaggctgaggcaggtggatcatttgaggccaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccagatatggtggcaggcacctgtaaccccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcggaggctgcagtgagttgagatcgcgccactccgctccagc s panTro1.chr19 20326831 558 - 82489036 gccaggtacagtgactcttgcttgtaatctcagtgctttgggaggctaaggcaggaggattgcttgaggccaggagtttgacaccagtctgggcaacatagtgagacctcatttctacaaaagatttaaaacttaaaagttagccaggtatggtggcaggtgtctgtaatcctaactacttgggaggctaatgtgggaggatctctcgaacttaggagtttgaggctacagggag-catgattgcgccactgtattccagcctgggtgacagaacaagaccccatctcttaaaaaaaaaaaaaaggccaggcatggtggctcatgcctgtaatcccagcacttcaggaggctgaggcaggtggatcatttgaggccaggagttcgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccagatatggtggcaggcacctgtaaccccagctacttgggaggctgaggcaggagaattgcttgaacctgggaggcggaggctgcagtgagttgagatcgtgccactccgctccagc a score=86.0 s hg17.chr17_random 874841 16 + 2618010 GTTAAAAGAATTCAAA s mm5.chr11 24733944 10 - 121648857 ATTAAAAAAA------ a score=8386.0 s hg17.chr17_random 874857 148 + 2618010 AGATGTAGCTGCATAATGAAGTATATTTAGGTTTCTGGCTGTTTGTATTCTTGGAATGTAT------------------------------TCTCTTCA----CCAGTGTTATTGATCTCATTCATGAACAGGGTAAGCATTCCCCACTTGAAGTGTGTTGTCTAGGACTG------------------TCTTGTGTGGG------ s mm5.chr11 24733954 122 - 121648857 ----------------------ATATTTAGGTTTTTGGCTGATTATATTTTC---ACATAT------------------------------GCTCTTAA----CTATTGTTATTGATCTCATTCATAAGTATGATAAGCTTTTATC-CTTCAACCTGATTGTCTGAGACCA------------------CCTTGTTTAAG------ s canFam1.chr9 16599514 202 + 53642819 AGATATAGCCATATAATGAATTATATCTAGGTTTTTGGTTGGTTGTATTCTT---ATGTATAATGTCTGCCTGAAAGATAGACATATAACGTTTCCTCAAATTTTGATGTCATT-ATCCCTTTCATAAATAGAGGAAGCATTTACTGCTTGAAATATATTGTTTAAAACAGAGAGTACTCTATATAACCTCTAATATGAATCTGGA a score=764.0 s hg17.chr17_random 875005 8 + 2618010 GAACTTGG s canFam1.chr9 16599716 8 + 53642819 GAACTTGG a score=23389.0 s hg17.chr17_random 875013 373 + 2618010 AAAAACCTGCTGC-ACCTGAAAATAACT--CTTTTATGT-ATTTACTGGGGGAGAGCATCCCATAAATAGAATGTCATTCTCTTCACACATATTCTTAGAAGAGGAGGCTAATACATTAAGCAGAAATATTCATTCACACTTTAGTATGAGTGAATTTAT-CAGTGTGTTCTT-------GAATAAGTCTTCCTTGGAAGGAAGAATAGAGAGAGCTTGA----GGAAAT--GGAGCCTGAATAGGAAA-AAGAGGGAGAACACCAAAG-GAA--------------------------------------------------------------------------------------------ATTAGGGACTCCAAAGGTAAAGTTGAAATTTCTTCACAAATAAGCTTAGAGCCAACTTTGG--TAGAGAATGCCCTCGATCTAGAAGT---TTGTATCCTTTGAAATGGGAGATTCTACAATTAT s rn3.chr10 24751796 442 - 110733352 AAAAACATCCAGC-------------------TTTGCCT-AGTTACTAATGGAAAGAATTCCCT---TGAAATGCCACTTTCTTCTTTTACATTACTAGAA-AGGAACCCAATACTCTACA-GGGAACATTCATTTACATTACAGTGTAAATGAATCTG--AGGTTTGTTTTTTAAATACAAATAGGGCTTCCTTGGAAGAAAG------GAGAGTCTTACTTAAGAAAC--AGCTACTGTACAGAAAAGAAAAGAAACAAAGCCACTG-GAATGTGTTGTCTGTGGTGTGGATCGCTGAGTTCCAGGCCAGTGTGGTCTACAAAGTGAGTTCCAGGAAAGCCAGGGCTGTTCAACAGAGAAACTGTTGGGAATTCCCTAGGTAAAGGTGAAGTTTTAC--------ATCTTCCAG--AGCTTTGG--GACACGGTATTTGGAATCTAGAACTCACTAATACTCTTTAAGATGTAAGATTCCATAATCAC s canFam1.chr9 16599724 380 + 53642819 AAAAGCCTAATGTAACCTGAAAATAACTGCCTTTTGCCTCCTTTATTGGTGGAGAAAATTTCATAGTTAGAATGCCATTCTCTTCTCAAATATTCTTGAAA-AGGAGGCTAATAAATAAAC-TGAAATATTACTTTACAATTTAGTATGAATGAATCTATCAGGTTTGTTTTT-------GAATAAGTCTTCCTCGGAAGAAAGAATACAGAGATTTTGA----AGAAGTAGAGAGCCTGAGTAGGAAA-TGAAGGGGTAACAGCAAAGAGTA--------------------------------------------------------------------------------------------ATTAGGGACTCTGTAGGTAAAGTGGAGATTCCTTCACAAATTTGCCTAGAGCCAGCCTTGGTTTAGAGAGTGCTCTAAATTTAGAAAT---CTGTACCCTTTGACATGT-AGATTTCACAATGAC a score=-219.0 s hg17.chr17_random 875386 7 + 2618010 ATTATAt s rn3.chr10 24752238 7 - 110733352 TTTTATT a score=2890.0 s hg17.chr17_random 875700 66 + 2618010 TTTTTATTAATAGTCATTTTCTCCTAAACTTATGTCAGTTGAAAAGTATGAAGCCCTTACTTAAAT s canFam1.chr9 16600104 66 + 53642819 CCTTTATTAATAATTAGTGCCTTCTATCCTTATTTCACTTGAAAAGTATTGAGGTCTTACTTTAGA a score=2644.0 s hg17.chr17_random 875766 27 + 2618010 CATCCCAATGCCTGGCTTATAATAAGT s rn3.chr10 24752461 25 - 110733352 CGTCCCAATGTTTGTCATGTAG--ACT s canFam1.chr9 16600170 27 + 53642819 CATCCCAGTGCTTAGCATGTAATAGGA a score=10429.0 s hg17.chr17_random 875793 68 + 2618010 ATTCGAGAAAAGTCCATTCCTCTTTTCTCTCACAGGTCCT-TGGTAGTTTTAACACTTCAGCCTCCAGC- s mm5.chr11 24734355 64 - 121648857 ATTCAAGAGAGGTTA--TCTTCTCTTTCTGAGTAAGCTCT-TAGT-GTTTTAATACTTT-GCTTCCAAT- s rn3.chr10 24752486 64 - 110733352 ATTCTGGAAAAGTTA---CCTTGTTTTTAAAGTAAGCTCTATGGT-GTTTTAACATTTT-GCTTCCAAT- s canFam1.chr9 16600197 66 + 53642819 ATTCAAGAAAAGTTA---TGTCTTTTCTCTCACAGATACT-TGGTAGTTTTAACACTTGAGCCCTCAAAC a score=3718.0 s hg17.chr17_random 875861 6 + 2618010 TTCTTA s panTro1.chr19_random 41888555 6 + 57627672 TTCTTA s mm5.chr11 24734419 6 - 121648857 TTCTTA s rn3.chr10 24752550 6 - 110733352 TCCTTA s canFam1.chr9 16600263 6 + 53642819 TTCATG a score=0.0 s hg17.chr17_random 875867 23 + 2618010 GTATGAGTGTTTTATCAGACCAC a score=5931.0 s hg17.chr17_random 875867 19 + 2618010 GTATGAGTGTTTTATCAGA s panTro1.chr19_random 41888561 19 + 57627672 GTTTGAGTGTTTTATCAGA s mm5.chr11 24734425 19 - 121648857 GTGTAAGGACTTTGTCAAA s rn3.chr10 24752556 19 - 110733352 GTGTAAGAACTTTCTCAAA a score=-255.0 s hg17.chr17_random 875886 4 + 2618010 CCAC---------- s panTro1.chr19_random 41888580 4 + 57627672 CCAC---------- s mm5.chr11 24734731 14 - 121648857 TCACTGAAGGAAAT s rn3.chr10 24752864 14 - 110733352 CCACTGAAAGAAAA a score=23688.0 s hg17.chr17_random 875890 95 + 2618010 TTTCCTTC-TTAAAG-----------ACAGCAT-AAAAGCACTGGA----TGAATTGGGGTAGAGAAATAAGCCATGCTAGAATAGAAAGGGGGAAAGAG-ATGCAATAAAGC s panTro1.chr19_random 41888584 95 + 57627672 TTTCCTTC-TTAAAG-----------ACAGCAT-AAAAGCACTGGA----TGAATTGGGGTAGAGAAATAAGCCATGCTAGAATAGAAAGGGGGAAAGAG-ATGCAGTAAAGC s mm5.chr11 24734745 97 - 121648857 TTTTCTTG-TAAGAGCAATGACCTTCATAATAT-AAAAGCACTGAA-----GAACTTAGTTA---AAATA--CCATTCTA----AGAAAGGGGAAAGGAGAAAATACTTAAGC s rn3.chr10 24752878 98 - 110733352 TCTTCTTC-TAAGAGCAAAGACCTTCATAATATAAAAAACACTGAT-----AAATTTGATTA---AAATA--TTATTCTA----AGAAAAGGAAAGGAAAAAAGTAGTTATGC s canFam1.chr9 16600269 101 + 53642819 TCTCCTTCTTAAGAGGAAGGATTTTAACAGCAT-AAGAGCAGTGAATGAATGAATTGGGGTAGATAAGTAAGCAGTGTTG----GAGAGGGGGAAGGGAG-AGGCAG------ a score=11233.0 s hg17.chr17_random 875985 17 + 2618010 CTACA-GTTTTTGGCTGG s panTro1.chr19_random 41888679 17 + 57627672 CTACA-GTTTTTGGCTGG s mm5.chr11 24734842 18 - 121648857 CTATAGGTTTTTGCCTAG s rn3.chr10 24752976 18 - 110733352 CTATAGGTTTTTGCATAG s canFam1.chr9 16600370 16 + 53642819 -CACA-GTTTTTGGCTAG s danRer1.chr11 6193006 17 + 27258617 CCACT-GTTTTTAGTTTG a score=6815.0 s hg17.chr17_random 876002 14 + 2618010 TATTTGCTCTATGG s panTro1.chr19_random 41888696 14 + 57627672 TATTTGCTCTATGG s mm5.chr11 24734860 14 - 121648857 TATTTACTCTAAAA s rn3.chr10 24752994 14 - 110733352 TATTTACTCGAAAA s canFam1.chr9 16600386 14 + 53642819 AATCTACTTTAAGG a score=766.0 s hg17.chr17_random 876016 4 + 2618010 TA-TT s panTro1.chr19_random 41888710 4 + 57627672 TA-TT s mm5.chr11 24734874 4 - 121648857 TA-CC s rn3.chr10 24753008 4 - 110733352 TA-CC s canFam1.chr9 16600400 5 + 53642819 TATTT s fr1.chrUn 199214763 4 - 349519338 TG-TT a score=1076.0 s hg17.chr17_random 876020 25 + 2618010 AATGTAAACCTATTT-----AAATTTTTC----------T s panTro1.chr19_random 41888714 25 + 57627672 AATGTAAACCTATTT-----AAATTTTTC----------T s mm5.chr11 24734878 35 - 121648857 AATATAAATCTCCTT-----AAATTATTCTTGTTTTCTGT s rn3.chr10 24753012 35 - 110733352 AATAAAAATCTCCTT-----AAATTTTTCTTGTTTTCTGT s canFam1.chr9 16600405 32 + 53642819 AACGTAAGTCTGTTT-----ATATGTTCT---CTTTCTCT s fr1.chrUn 199214767 28 - 349519338 GCCTTTAACATATTTAGAACAGATGCCA------------ s danRer1.chr11 6193344 25 + 27258617 AATTTGAATCCTAAT-----ATGTGTTAT----------T a score=444520.0 s hg17.chr17_random 876045 314 + 2618010 TTTTTTTCTTTCTTAAAGAATGTAATTGACCGGAAACCATACCCTGATGATGAAAATTTAGTGGAAGTGAAGTTTGCCCGCACACCTGTTACATCTACATATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCTGTGTTTACACTCCTGTTGGCAAAGCAGAACAAGGAAAATTTGCATTAGAGGTA--AATGTACTTGA--AGAGG----ATTGTTCCA-GCAGTCCATAACTCCAGGTTG--------------GGGAATTTACATTTCTGGTCAATTATTAG----TACAGTTATTTATAATT s panTro1.chr19_random 41888739 313 + 57627672 TTTTTTTCTTT-TTAAAGAATGTAATTGACCGGAAACCATACCCTGATGATGAAAATTTAGTGGAAGTGAAGTTTGCCCGCACACCTGTTATGTCTACATATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCCGTGTTTACACTCCTGTTGGCAAAGCAGAGCAAGGAAAATTTGCGTTAGAGGTA--AATGTACTTGA--AGAGG----ATTGTTCCA-ACAGTCCATAACTCCAGGTTG--------------GGGAATTTACATTTCTGGTCAATTATTAG----TACAGTTATTTATAATT s mm5.chr11 24734913 318 - 121648857 TTTTGTTTTTCCCTTAAGAATGTAATTGACAGGAAACCATATCCTGATGATGAAAATTTAGTGGAAGTGAAGTTTGCTCGCACACCTGTTATGTCTACGTATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCCGTGTTTACACCCCTGTTGGCAAAGCAGAGCAAGGAAAGTTTGCGCTCGAGGTA--AATGTCCTTGA--AGAGG----ATTGCCCCA-GTAGTCCACAGCTGCAGGCTG--------------GGGAGTTTACATCATCAGTTACTGGTTCGGTTATTCGGTTATTTGTGATT s rn3.chr10 24753047 313 - 110733352 TTCTGTTTTCC-TTTAAGAATGTCATTGACAGGAAACCATACCCTGATGATGAAAACTTAGTGGAAGTGAAGTTTGCTCGCACACCTGTTATGTCTACATATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGGTCAAAAGATGGTGTGTGTGTCCGTGTTTACACCCCTGTTGGCAAAGCAGAGCAAGGAAAATTTGCACTAGAGGTA--AATGTCCTTGA--AGAGG----ATTGTTCCA-ACAGTCTATAACTCCAGGTTG--------------GGGAATTTACATTTCTGATCAATTATTAG----TACAGTTATTTATGATT s canFam1.chr9 16600437 314 + 53642819 CTCTCTCTTTTTTTAAAGAATGTAATTGATCGGAAACCATACCCTGATGATGAAAATGTAGTAGAAGTGAAGTTTGCCCGCACGCCTGTCATGTCTACATATCTGGTGGCATTTGTTGTGGGTGAATATGACTTTGTAGAAACAAGATCAAAAGATGGTGTGTGTGTCCGTGTTTACACCCCTGTTGGCAAAGCAGAGCAAGGAAAATTTGCGTTAGAGGTA--AATGTACTTGA--AGAGG----ATTGTTCCA-ACAGTCCATAACTCCAGGTTG--------------GGGAATTTACATTTCTGATCAATTATTAG----TACAATTATTTATAATT s galGal2.chrUn 27911251 330 - 165033910 TTCTCTTTCATGTTGAAGAATGTCATTGACCGGAAGCCATACCCAGATGATGAAAACCTGGTGGAAGTCAAGTTTGCTCGCACCCCCATCATGTCGACGTATCTGGTGGCGTTCGTGGTGGGAGAATATGACTTTGTAGAGACCAGGTCCCTAGATGGTGTCTTAGTGCGTGTTTACACTCCTGTGGGCAAAGCTGAGCAAGGAAAGTTTGCATTAGAGGTA--AATGCACTCAG--GGTGATTTTGTTATTGCT-GTTGTGAGCTCCTGCAGGCTGTGTGTGCCTCTCCTGGGGTCACACAGATCTGCCAGAGCTTTGG----GAGGGT--GTTCTGCTT s fr1.chrUn 199214795 317 - 349519338 TTTAACCGTCTCTTCCAGAATGTCATCGAACGAAAACCGTATCCAGATGATGAAAACCTGTTGGAAGTGAAGTTTGCCACCACACCCATCATGTCCACATACCTCGTAGCTTTTGTCATTGGTGAATATGACTTTGTGGAGAACCAGTCTTCAGATGGTGTAACAGTACGTGTGTACACGCCTGTTGGAAAGGCTGAACAAGGGAAATTTGCCCTGGAGGTAAGAACATCATTAATCTGAGG----ATTCCTGAACATGGTTGACAGCTTGATGTCT--------------CAGTACCTAAAAT--TGTTTGAGCCTTAG----TGATGGTATCTTTTATT s danRer1.chr11 6193369 279 + 27258617 GTTTCCTTTTCTTTGAAGAATGTTGTTGACCGAAAGCCATATGCAGAGGATCAGAGTCTGGTGGAGGTGAAGTTTGCCACAACACCCATCATGTCCACCTATCTAGTGGCATTTGTCATTGGCGAGTATGACTTTGTGGAGAGCCAGTCGTCAGATGGTGTGACAGTTCGTGTGTATACTCCTGTTGGAAAGGCAGAGCAAGGGAAATTTGCACTAGAGGTA---------------TGACA----ACT-------ACAGTCTGTGAGACC----CA--------------GGATATTTTAAAATCTGTT--------------TA----TATTTACAAAC a score=0.0 s hg17.chr17_random 876359 2 + 2618010 TA a score=1911.0 s hg17.chr17_random 876359 1 + 2618010 T s panTro1.chr19_random 41889052 1 + 57627672 T s mm5.chr11 24735231 1 - 121648857 T s rn3.chr10 24753360 1 - 110733352 T s canFam1.chr9 16600751 1 + 53642819 T s galGal2.chrUn 27911581 1 - 165033910 T s fr1.chrUn 199215112 1 - 349519338 T a score=1365.0 s hg17.chr17_random 876360 1 + 2618010 A s panTro1.chr19_random 41889053 1 + 57627672 A s mm5.chr11 24735232 1 - 121648857 A s rn3.chr10 24753361 1 - 110733352 A s canFam1.chr9 16600752 1 + 53642819 A s galGal2.chrUn 27911582 1 - 165033910 A a score=6827.0 s hg17.chr17_random 876361 49 + 2618010 AT----CTGAAAGTTG---TGCTACTTG--GTTTATTTTTAATAGAATTTAGGAAATG s panTro1.chr19_random 41889054 49 + 57627672 AT----CTGAAAGTTG---TGCTACTTG--GTTTATTTTTAATAGAATTTAGGAAATG s mm5.chr11 24735233 52 - 121648857 AT-----GGAAAGTTGCTTTGATACTTTC-ATTTCATTTTACTAGAATTTTGGATATG s rn3.chr10 24753362 53 - 110733352 AT-----GGAAAGTTGTTTTGATACTTTCATTTCACTTTTACTAGAATTTTGAATATG s canFam1.chr9 16600753 53 + 53642819 GA----CTGAAATTTGTTGTG-TACTTCGGTTTTATTTTTAATAGAATTTTGAAACTA s galGal2.chrUn 27911583 38 - 165033910 ATAGCTCGGAAGG----------ACTGG--GTTTGATGTTAA--------AGGAAACT s danRer1.chr11 6193648 47 + 27258617 AT----CTGAGCCTAG---AGCTGCATG----ATAAATTAAATAAAATTAAGATGATG a score=8245.0 s hg17.chr17_random 876410 9 + 2618010 CCAACCTTG s panTro1.chr19_random 41889103 9 + 57627672 CCAGCCTTG s mm5.chr11 24735285 9 - 121648857 CCATCCTTG s rn3.chr10 24753415 9 - 110733352 CCATCCTTG s canFam1.chr9 16600806 9 + 53642819 CCAACCTTG s galGal2.chrUn 27911621 9 - 165033910 TCACTCGTG a score=4124.0 s hg17.chr17_random 876419 15 + 2618010 GTG---TTTCGTTATTTT s panTro1.chr19_random 41889112 15 + 57627672 GTG---TTTCGTTATTTT s mm5.chr11 24735294 15 - 121648857 TTG---CATTAACATTTT s rn3.chr10 24753424 15 - 110733352 ATG---CATTAGCATTGT s canFam1.chr9 16600815 18 + 53642819 GTGTTACATTAATATTTT a score=91.0 s hg17.chr17_random 876434 1 + 2618010 A s canFam1.chr9 16600833 1 + 53642819 A a score=-137.0 s hg17.chr17_random 876434 1 + 2618010 A s panTro1.chr19_random 41889127 1 + 57627672 A s mm5.chr11 24735309 1 - 121648857 C a score=16184.0 s hg17.chr17_random 876435 114 + 2618010 CAAAATAATAATTAAGAGAATATAAGAGT---------------------------------------------------------------------------------------------GGAATTT----------------------------------------CTCTAGGG--------------------------------------AATGGGTTG----GAAAATATGTAGTTATATTTTTCATATCAAGTTATAAATGGATTAAAGTTTGGCCATTGTA s panTro1.chr19_random 41889128 111 + 57627672 CAAAATAAT---TAAGAGAATGTAAGAGT---------------------------------------------------------------------------------------------GGAATTT----------------------------------------CTCTAGGG--------------------------------------AATGGGTTG----GAAAATATGTAGTTATATTTTTCATATCAAGTTATAAATGGATTAAAGTTTGGCCATTGTA s mm5.chr11 24735310 211 - 121648857 TAAGATAATGATCCAGAAAATACAAAAGTCAGGGCCAAGGGTCATGG--------------------------------------------------------------------------GAGAGTTTGTGTGTAACAGTGCATGAAGTCGTGAGTTCAAACCTCTCCCTCTGGAGTAAAGAGAGAGAGAATATAAAAACAGGATTTGTTTTTCTATGGACTACCATGAAAATATATAAT--TATTATTCATACCAACTTATAAATGGGCTAGAGTTAGGTCAGCG-- s rn3.chr10 24753621 204 - 110733352 CCAGATAATGATCCAGAAAACACAAACGT--GGGGTGAAGGTAGTGGTTTGTATTTAACAGTGCATGACGTTGTGAGTTCAAACCTTTTGCTCTGGAGAAAAGAGAAAGAGAGAATATAAAAACAATTTGTTT------------------------------------TTC-------------------------------------------TATGGAATACTATGAAATTATATAGT--TATTGATCATACCAGCTTATACATGGGCTACAGTTAGGTCAGTG-- s canFam1.chr9 16600834 116 + 53642819 CAAGATGATGATTAAG-GAATATTAGCGT---------------------------------------------------------------------------------------------GGAATTTATTT------------------------------------GTCCACAG--------------------------------------AGTGGGTGG----GAAAAGATGTAAT-ATATTTTTCATACTGAGTTATAAGTGGATTAAAATTTGGTCAATATC a score=52553.0 s hg17.chr17_random 876549 141 + 2618010 TTCAAAGTTTG----GAGCTAAGGCAGTCTTCGGAGGTA---GGGCTCCCTGGGATTCA---------TTTCTAGTAA---------------------TTTAAGATACA-TTGGCTTGCAACAGGATTCCTTTGTGGGTTTCAATATGAATTATAATAACATATTTATTAGATGGTTA s panTro1.chr19_random 41889239 141 + 57627672 TTCAAAGTTTG----GAGCTAAGGCAGTCTTCGGAGGTA---GGGCTCCCCAGGATTCA---------TTTCTAGTAA---------------------TTTAAGATACA-TTGGCTTGCAACAGGATTCCTTTGTGGGTTTCAATATGAATTATAATAACATATTTATTAGATGGTTA s mm5.chr11 24735521 147 - 121648857 -ACAACATTTGTAGCGAGCGAACACAGTCTTCAGAGGAAGCCGGGTTCCCTGGGATCCG---------TTTCTAGAAG---------------------CTTCAGGTGGT-TTAGCCTAAAGCAGCTCTCCTTTGTGGGTTTCTGTGTGACTTATAATACAATATTCATAGGGTGATTT s rn3.chr10 24753825 137 - 110733352 -ACAACATTTG----TTAC--AATTAGTCTTCAAAGGAAGTAGAGTTCCCTGGGATCAG---------TTTCTAGAAG---------------------CTTAAGATAGT-TTGGCCTAAAGCAGGTTTCCTTTGTGGATTTCTATGTGGCTTACAATAAAGTATTCATAGGATG---- s canFam1.chr9 16600950 132 + 53642819 AGCAA----------AAGCCAAAG--ACTTTTGGAGGTA---GGGTTCCCCAGGGTCGA---------TTTCTAGTAA---------------------TTTGAGATGCT-TTGGCTTGCAACAGGAATCC-TTGTGGATTTCTATATGAATTACAATAATATATTTATCAGATGGTTC s galGal2.chrUn 27911757 166 - 165033910 TCCAAGGCTT-----TGGGGATGGGAGCCTTCCAAGGCA---TTGTGCTCTGGAAGCTGGGAATGAGTCTTCTGGAGGAAAGCTGGTGTGTGCTGCTCTCATAGGCTGGTCTTGGCCATCAGGAAGCTTTTCCTTTTACCAACTGTTTCAAGT-TAACAAAATATTTACCAGGTT---- a score=2263.0 s hg17.chr17_random 876690 5 + 2618010 TTTTG s panTro1.chr19_random 41889380 5 + 57627672 TTTTG s mm5.chr11 24735668 5 - 121648857 TGTTT s rn3.chr10 24753962 3 - 110733352 --TTT s canFam1.chr9 16601082 5 + 53642819 TTTTG s galGal2.chrUn 27911923 3 - 165033910 --TCT s fr1.chrUn 199215113 5 - 349519338 TTCTG a score=244037.0 s hg17.chr17_random 876695 154 + 2618010 TTTATACTTTTATAGGTTGCTGCTAAAACCTTGCCTTTTTATAAGGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCAGACTTTGCAGCTGGTAAAGTAAATTTCATTTTATTGCTGAA---TTGTAATAACTTTT s panTro1.chr19_random 41889385 154 + 57627672 TTTATACTTTTATAGGTTGCTGCTAAAACCTTGCCTTTTTATAAGGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCAGACTTTGCAGCTGGTAAAGTAAATTTCATTTTATTGCTGAA---TTGTAATAACTTTT s mm5.chr11 24735673 153 - 121648857 TTTGTACTTTT-TAGGTTGCTGCTAAGACCTTGCCTTTTTATAAAGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCTGACTTTGCAGCTGGTAAAGTAAATTTCATTTTACTGCTGAA---TTGTATGACTTTAT s rn3.chr10 24753965 153 - 110733352 TTTGTACTTTA-TAGGTTGCTGCTAAAACCTTGCCTTTTTATAAAGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCTGACTTTGCAGCTGGTAAAGTAAATTTCATTTTATTGCTGAA---TTGTATGACTTTAT s canFam1.chr9 16601087 152 + 53642819 TTTATACTTTTGTAGGTTGCTGCTAAAACCCTGCCTTTTTATAAGGACTACTTCAATGTTCCTTATCCTCTACCTAAAATTGATCTCATTGCTATTGCAGACTTTGCAGCTGGTAAAGTAAATTTCATTTTATTGCTGAA---TTGTAATAACT--T s galGal2.chrUn 27911926 152 - 165033910 CCTCTTCTCTTACAGGTTGCTGCTAAAACTCTGCCTTTTTATAAGGACTACTTCAATGTTCCTTACCCTCTTCCTAAAATTGATCTCATAGCTATTGCAGATTTTGCTGCTGGTAAAGTAA--CTCACTTTATTGATGAA---CTGTATTTTATTTG s fr1.chrUn 199215118 142 - 349519338 TTTTCATTTTGTAAGGTTGC-ACTAAGACATTACCATTCTACAAAGAATACTTCAGTGTTCCCTATCCTTTGCCTAAGATTGATCTCATAGCGATTGCTGATTTTGCTGCTGGTGAGTCATGCTTAGCTTTGAT--TGCA---CTGTT--------- s danRer1.chr11 6195922 147 + 27258617 TTTATTTTCTTTCAGGTTGCCACAAAGACCCTTCCGTTCTACAAAGATTATTTCAGTGTTCCTTATCCGTTGCCTAAAATTGATCTAATTGCTATTGCTGATTTTGCTGCTGGTTGG-----TGTCATTTTCTT--TAAACATCTCTCAGAATT--- a score=11232.0 s hg17.chr17_random 876849 22 + 2618010 TAAAA------TTTTGTGACTTTTGATG s panTro1.chr19_random 41889539 22 + 57627672 TAAAA------TTTTGTGACTTTTGATG s mm5.chr11 24735826 22 - 121648857 TTGAA------TTTTGTGATTTTTGAGG s rn3.chr10 24754118 22 - 110733352 TTGAA------TTTTGTAATTTTTGAGG s canFam1.chr9 16601239 21 + 53642819 TTGAA------TTTTGTGA-TTTTGAGG s fr1.chrUn 199215260 27 - 349519338 TGAGATGCTGTTTCTGTAAATGTTAAG- s danRer1.chr11 6196069 22 + 27258617 TAAAA------CATTGTCTGTTATGCTT a score=2139.0 s hg17.chr17_random 876871 5 + 2618010 CAAGA s panTro1.chr19_random 41889561 5 + 57627672 CAAGA s mm5.chr11 24735848 4 - 121648857 -AAAA s rn3.chr10 24754140 4 - 110733352 -AAAA s canFam1.chr9 16601260 5 + 53642819 AAGGA a score=0.0 s hg17.chr17_random 876876 31 + 2618010 GtatatatatatatatatatatatatatCTC a score=4785.0 s hg17.chr17_random 876876 28 + 2618010 Gtatatatatatatatatatatatatat s panTro1.chr19_random 41889566 24 + 57627672 Gtatatatatatatatatatatat---- s mm5.chr11 24735852 15 - 121648857 GTATGCATATATATA------------- s rn3.chr10 24754144 13 - 110733352 GTATGCATATATA--------------- s canFam1.chr9 16601265 13 + 53642819 ATATGTACATATA--------------- a score=2467.0 s hg17.chr17_random 876904 3 + 2618010 CTC s panTro1.chr19_random 41889590 3 + 57627672 CTC s mm5.chr11 24735867 2 - 121648857 -TC s rn3.chr10 24754157 2 - 110733352 -TC s canFam1.chr9 16601278 2 + 53642819 -TC s galGal2.chrUn 27912112 3 - 165033910 ATC a score=24211.0 s hg17.chr17_random 876907 23 + 2618010 AATAAATGTTTATATTTATTTTG s panTro1.chr19_random 41889593 23 + 57627672 AATAAATGTTTATGTTTATTTTG s mm5.chr11 24735869 23 - 121648857 AATAAATGTTTATATTTATTTTA s rn3.chr10 24754159 21 - 110733352 AATAAATGTTTA--TTTATTTTA s canFam1.chr9 16601280 23 + 53642819 AATAAATGTTTATATTTATTTTA s galGal2.chrUn 27912115 23 - 165033910 AATAAACCTTTGTATTTATTTTA s fr1.chrUn 199215287 21 - 349519338 AATAACATTTTACTCCCATTC-- a score=102090.0 s hg17.chr17_random 876930 46 + 2618010 TGAAGGTG-CCATGGAGAACTGGGACCTTGTTACTTATAGGTATGTT s panTro1.chr19_random 41889616 47 + 57627672 TGAAGGTGGCCATGGAGAACTGGGACCTTGTTACTTATAGATATGTT s mm5.chr11 24735892 46 - 121648857 TGAAGGTG-CCATGGAGAACTGGGGCCTTGTTACTTATAGGTATGTT s rn3.chr10 24754180 46 - 110733352 TGAAGGTG-CCATGGAGAACTGGGGCCTTGTTACTTATAGGTATGTT s canFam1.chr9 16601303 46 + 53642819 TAAAGGTG-CCATGGAGAACTGGGGCCTTGTTACATATAGGTATGTT s galGal2.chrUn 27912138 46 - 165033910 TAAAGGTG-CCATGGAGAACTGGGGCCTTGTTACTTATAGGTATGCT s fr1.chrUn 199215308 43 - 349519338 ---AGGTG-CCATGGAAAACTGGGGCCTTGTTACATACAGGTAGGCT s danRer1.chr11 6196122 46 + 27258617 TGTAGGTG-CCATGGAAAACTGGGGCCTTGTTACTTACAGGTAAGTT a score=203403.0 s hg17.chr17_random 876976 569 + 2618010 -----AATGATGT---ATTACCCTGCCTTATCTTTTCA------------AATCACTGATTTCAA--------AAGGGCTTCCCTCCTAATCA---CAGTTGAGTAGCTTCTGCTTTACGATATGGTGTAAATTTTTCTACCTTCCCC---------CACTTCCATGCACATTTCAAGAATGCAG--ATGGACACCTCTCCCTTTGGTGCTACTGTCTGAGGGTGTAAGA-TTTTAAAGTGAGCATCTGGCGGTAGTAGCATTTTTAGATATATTCTTGGCTAAGTTTCTCATTGCAGTGCCTTTCTTTCCTGCCAGTAGTTTCATAGCTATTTATCCAGCTTGGAGAACCTTCCCTAATTTCATATCTTCTAGCCAAGTTTTTACATGTCTGTCACCACAACATAAACATGTGAGTTGAATAACTTTTAAAAGCAGAGTCTGTCTGTAAACAAGTTTTTGCCTTCTACT--------TTCAATTGCCTTCTTAGATGAGCTAAGTGTTGAACGGCCGGCTCAGTGCTGTTTTTGGGACTATGGAATGCATCT-TCCTCCACCACT--------CCCCTCATTTAA--TGAAAGGACTTTCTTCTC-TCTCCATCTAGCACAGTAATCGCTA s panTro1.chr19_random 41889663 569 + 57627672 -----AATGATGT---ATTACCCTGCCTTATCTTTTCA------------AATCACTGATTTCAA--------AAGGGCTTCCCTCCTAATCA---CAGTTGAGTAGCTTCTGCTTTACGATATGGTGTAAATTTTTCTACCTTCCCC---------CACTTCCACGCACATTTCAAGAATGCAG--ATGGACACCTCTCCCTTTGGTGCTACTGTCTGAGGGTGTAAGA-TTTTAAAGTGAGCATCTGGCGGTAGTAGCATTTTTAGATATATTCTTGGCTAAGTTTCTCATTGCAGTGCCTTTCTTTCCTGCCAGTAGTTTCATAGCTATTTATCCAGCTTGGAGAACCTTCCCTAATTTCATATCTTCTAGCCAAGTGTTTACATGTCTGTCACCACAACATAAACATGTGAGTTGAATAACTTTTAAAAGCAGAGTCTGTCTGTAAACAAGTTTTTGCCTTCTACT--------TTCAATTGCCTTCTTAGATGAGCTAAGTGTTGGACAGCCGGCTCAGTGCTGTTTTTGGGACTATGGAATGCATCT-TCCTCCACCACT--------CCCCTCATTTAA--TGGAAGGACTTTCTTCTC-TCTCCATCTAGCACAGTAATCGCTA s mm5.chr11 24735938 502 - 121648857 -----AATGACAC---GTTACCCTGCCTT---CTTTCA------------AATCACCGATCTCAT--------AAGGGCTTCACT-CTGTTCA---CAGTTGAGTGGCTTTTGCTTTATGCTCTGG-GAAAATTTTTCTGCCTCTCCT---------GAGTTTCATGAATATTTGAAGCATGCAG--ATGGATTTCCCTCAC--TGGCGCTA---TCTGAGGGTACAATATTTTTAAAGGGTGCATTTGGCACTTGTCGC-TTTTTAGCTGTGTTCTTGGCTGAGTCAC---GTCCAGTGCTGTT--------TCACGAGTGACATAGCTA-TTGCCCGATGTGACGAGCCT---CCGGTTCTGTATTTTGTAGGCAGAGTTTTACATGGCTGTCAGCACAGTACAAACATGTGGGTTGCATAAGTTCT-GAAGCTGA----GTCTGTAAACAATTTTTT--CTTCCACT--------TTCAGTTGTCT--TTGGATGAGCTGAGCTCTGTAGAGCCTGCTCAGTGTCCTCTTTGGGACTTTACACTG--TCT-TCTGCTGCTACT------------------------------TTTTCGTGTCTTCTCTGATTAGCA------------ s rn3.chr10 24754226 496 - 110733352 -----AATGACAC---ATTACCCTGCCTT---CTTTCA------------AATCACTGATTTCAT--------AAGGGCTTCACT-CTATTCA---CAGTTGAGCGGCTTTTGCTTTATG------------CTTTTCTGCCTCTCCT---------GAGTTCCATGACTATTTGAAGCATGC-G--ATGGAC-TCCCTCGC--TGGTGCTACTGTCTGAGGGCACAGTATTTTTAAAGGGAGCATTTAGCACTTGTAGCATTTTTAGTTGTGTTCCTGGCTTGT-------GTGTAGTGTGATTTCTTC---CCAAGAGTTACATAGCTA-TTGCCCAACATGAGGAGCCT-CCCCGATTCTGTATTTTCTAGGCAGATTTTTACATGGCTGTCAGCACAGTACAAACATGTGGGTTGCATAAGTTCT-CAAGCTGAGTCTGTCTGTAAACAATTTCTC--CTTCCACT--------TTCAGTTGCC---TTGGATGAGCTCAGATCTGTAGAGCCTGCTCAGTGTC-CCTTTGGGACC-TGAGGTG--ACT-TCTGCTGCCGCT------------------------------TTTTCCTGTC--TTCTGATTAGCAG----------- s canFam1.chr9 16601349 553 + 53642819 -----AATGATACATTATTACCCTGCCTTATCTTTTC-------------AATCACTGATTTCAT--------AAGAGCTTCACTCCTAATCA---CAGTTGAGTAACTTCTGCTTTGTGATCTGCTGTAAATTTTCCTACCTCCCCC----------ACTTCTGTGCACATTTCAGGAATGCAG--ATGAAC-ACCCTC----TGGTGCTACTATCTGAGATTGTGAGA-TTTTAAAGTGAGCATCTGGCATTAGTA-CATTTTTAAATCTATTTTTGGCCAAGTTTCTCATTTCAGTGCCTTCTCTTCCTCCCAGAAGTTTCATAGTTATTTTTCCAGCTTGAAGAACTGACTCTGCTTTAATATTTTCTAGCCAAGTTTTTACATATCTGTCACCACAATACAAACATGTGGGTTGTATAATTTTT-AAAGCAGG----GTCTGTAAACAAGTTTTTGCC--------------------CCGCC---TTTGATGAGTTACATTTTGGACAGCCTGCTCAGTGTTCTTTTTGGGACTATGGAATGTATCTGCCCCCCACCACTTGCCACTCCCCTTCTTTTAA--TGGAAGGACTGTCTGCTC-TCTCTGTCTAGCACAATAATCCCTA s galGal2.chrUn 27912184 525 - 165033910 GTTAAAATACTGT---CTTTCCCCTCCTT---TGTTCACTAATTCTTAGCAGTAACTGGATTAGTTTTAGGGAACTGGCATCATCCCAAATAAGACCAAATCAATACCTTCAGCTCT-TGCTTCACTTTGAACCGTTGTGACTTCTGCAGCAGCGTGCATTATTACACAAACCTTAGGAAGGCAGGAATGAGC-----TC----TGTAGGCACTGTCCAAGGGTGTGAGGGTTTTTAACTG----CCTGGCAGCACTGCC---------TGTTCTCCAAGAGAACTTTC---TTG----GCTGTTTTTTCCCCATCCAGGTTACGCGCTTACTGGCACAGCTGGAAGGGTTT---CTTGTTT--TATGTTGTAGGCAAGTTGGTCAATGTA-GCAGCCACATGATTATCATGTAAAT--GAGGAATACT--AACTTGCCTTCCTTTG----CAGTTTTTTGTGTTCATCTGATCAAGCTTTTACACCTTTGCTTGATACTC-----------CTGCATGATCTGTGCACATTGTTAGACTGA------------TTCTCCTTCATT--------TTGTACATTGGACTTGGAAG--CTTTGGACTT------------------------CA a score=-10218.0 s hg17.chr17_random 877545 82 + 2618010 ATCCCTTAGACAAT-----GTTTTCCCAAAATTTCAGGCAGCTATTCTA----TCAACAAACTGATAATTAAACTTGTGT---------CACATCTTTGA s panTro1.chr19_random 41890232 82 + 57627672 ATCCCTTAGATAAT-----GTTTTCCCAAAATTTCAGGCAGCTATTCTA----TCAACAAACTGATAATTAAACTTGTGT---------CACATCTTTGA s mm5.chr11 24736440 48 - 121648857 -------------------GTCTTCCT-AGTCACCAGGCAG----------------CACACTAA----TAAACTTGGCT------------ATCTTTGA s rn3.chr10 24754722 30 - 110733352 -----------------------TCCT-AGTCGCCAGACAG----------------CGCACTGA----CAAGC-------------------------- s canFam1.chr9 16601902 82 + 53642819 ATCCCTTAGACAAA-----GTTTTTAAAAACTTTCAGGCAGCTGTCCTA----TTTACAAACTGATGATTAAACTTCTAT---------CACACCTTTGA s galGal2.chrUn 27912709 75 - 165033910 ATCCTTTTGAATTT-----CTTTTGCTAAACTTTGA-------ATTTTG----GCCTTAAAAGAAAAAAAGAATTTGCAA---------TGGATGTTTGA s danRer1.chr11 6196392 100 + 27258617 ATCTTTTAGATTTTCACTGATTTTGCCTTGTTTAACCCAAGCCATTttagatgtctattagatgtctattagaCTTATTTTAAACACAACATATGCTTGC a score=13198.0 s hg17.chr17_random 877627 34 + 2618010 --TATTCTGTTGTATTAATTCTGTTGGGGTAGTCTT s panTro1.chr19_random 41890314 34 + 57627672 --TATTCTGTTGTATTAATTCTGTTGGGGTAGTCTT s mm5.chr11 24736488 34 - 121648857 --TTTTCTGTTGTACATAGTCTATCAAAGTAGTCTT s rn3.chr10 24754752 31 - 110733352 -----TCTGCTGTCCTTAGCCTGTCACAGTAGGCGT s canFam1.chr9 16601984 34 + 53642819 --TCTTCTCTTGTATGAATTCTGTTGGAACAGTCTT s danRer1.chr11 6196492 36 + 27258617 TGGGTTGTGTTTTTTTATTTTTGCAAGCATGCTGTT a score=-1836.0 s hg17.chr17_random 877661 39 + 2618010 ----TAATCTTCGTGAAACTTTTTC-TTTCCATATT-----AGGAAATA-- s panTro1.chr19_random 41890348 38 + 57627672 ----TAATCTTCGTGAAACTTTTTC--TTCCATATT-----AGGAAGTA-- s mm5.chr11 24736522 44 - 121648857 ----TAGACTTCCTGAACCCTATTT-ATCTTACATTTCCTGAGAAAATG-- s rn3.chr10 24754783 43 - 110733352 ----CAGACTGCTGACCGTCTGTCT-GTCTTACCCTTGCT-GAGAAGTG-- s canFam1.chr9 16602018 45 + 53642819 ----TAATCTTTCTGGAACTTTTTCTATTCTGTGTACTCTGAGGAAATG-- s galGal2.chrUn 27912812 37 - 165033910 ----CAATTTTTATGAAATCTTTTA-CTTCCCCT-------GGGGAACA-- s danRer1.chr11 6196528 43 + 27258617 CAGGAGAGCTTCATTAA--TTTTTC-ATCCTTCTTG-----GTAGCATGTT a score=7745.0 s hg17.chr17_random 877700 103 + 2618010 TTTTCCTAATATCTCTAAAGCCTAACTT--GTCCAT--------CTGACTTACTGTCTGAATCTT----CCCAACTTATGCATGCCCACTTTTATTG---------------TTT---AAATTTGTTTCTCTTTT---- s panTro1.chr19_random 41890386 102 + 57627672 TTTTCCTAATATCTCTAAAGCCTAACTT--GTCCAT--------CTGACTTACTGTCTGAATCTT----CCCAACTTATGCATGCCCACTTTTATTG---------------TTT---AAATTTGTTTCT-TTTT---- s mm5.chr11 24736566 102 - 121648857 TTTACTTGATATTGCTAAAGCCTAATATAAAGCCAG--------TTGACTTACTGCCTGAACCTC----CTTCTCTTCTCTATGCCTGCTTTTATTG---------------------AAATGCTTTTACCATTT---- s rn3.chr10 24754826 95 - 110733352 TTTACTCGGCATTGCTGAAGCC--ACTGTAGAGCAG--------TTGA-TCATTGCCTGCATGCC----CCGCACTTCTTCATG----CTTTTATTG---------------------AAACACTTTTACCATTT---- s canFam1.chr9 16602063 133 + 53642819 TTTTCTTGACATTTCTAAAGCCTAACTT--GACCATTTACTTGACTAATTTACTGTTTGAATCTCCCTTCCCCATTTGTGCATGCCTGCTTTTATTGAAATACTTAACATTACTTAAAAAGTTTTTTTTTTGTTT---- s galGal2.chrUn 27913459 91 - 165033910 TTGTACCGATCACTCTGTAGCTTGTTTA--GGTTAT--------TTAACCTACT-------TTTG----CTGTGTTTTTTAACGTAGGC-----TTG---------------TTT---CACTCTGTTCAGTTACC---- s danRer1.chr11 6196571 90 + 27258617 AATCCCCAGCATACCTTAACAGTA--TG--AGCCAC--------ATTA--TGCTCCCTG----TT----CTGTAGTCATGCAT-----TTTTTATT----------------------CGCTGCTTTTATCATTTTGCA a score=288123.0 s hg17.chr17_random 877803 237 + 2618010 T-----TTTTTTTTTAAACATAGGGAGACTGCATTGCTTATTGATCCAAAAAATTCCTGTTCTTCATCCCGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTTGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATTTATCTTCATC--CTACTCCACATTATTTTG--GCTA-----CATAG-TATTTCAAGTT--------TGGCTGCAACACTGTGCCAAAAAA s panTro1.chr19_random 41890488 237 + 57627672 T-----TTTTTTTTTAAACATAGGGAGACTGCATTGCTTATTGATGCAAAAAATTCCTGTTCTTCATCCCGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTCGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATTTATCTTCATC--CTACTCCACATTATTTTG--GCTA-----CATAG-TATTTCAAGTT--------TGGCTGCAACACTGTGCCAAAAAA s mm5.chr11 24736668 240 - 121648857 TATTTATTTCTTTTTAAACACAGGGAAACGGCCTTGCTTATTGATCCAAAAAACTCGTGTTCTTCATCACGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTCGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATCCATCTATGTC--CTGCTGCACATTATTTTG--GCCA-----CAC---TCTTTCAAATT--------TGGCTATGATACTATGCCGAAAAT s rn3.chr10 24754921 238 - 110733352 TATT--TATTCTTTTAAAAACAGGGAGACGGCATTGCTTATTGATCCAAAAAACTCGTGTTCTTCATCACGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTCGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATCCATCTGTGTC--CTGCTGCACACTATTTTG--GCCA-----CAC---TCTTTCAAATT--------TGGCTATGATGCTAGGCCAAAAAT s canFam1.chr9 16602196 240 + 53642819 TTGT--TTTTTTTTTAAACACAGGGAGACTGCATTGCTTATTGACCCAAAAAACTCCTGTTCTTCATCACGCCAGTGGGTTGCTCTGGTTGTGGGACATGAACTCGCCCATCAATGGTTTGGAAATCTTGTTACTATGGTA----TTTAATATTTTTAAGTGCTCAAATATATTTATCTTCATC--CTGCTGCACATTATTTTG--GCTA-----CATAG-TGTTTCAGGTT--------TGACTGGAACATAGTGCTAAAAAA s galGal2.chrUn 27913550 246 - 165033910 T-----CTCTCTTTTAAATACAGGGAGACTGCATTGCTCATTGACCCCAAGAATTCCTGTTCTTCATCTCGCCAGTGGGTGGCTCTGGTTGTGGGACATGAACTTGCTCATCAGTGGTTTGGAAACCTCGTGACCATGGTA----TCTAACAGTGACAAATTCT----TCTAGTTCTTGTTGACGTGTGCTTCATATCATTATT--ATTAAGTGTCAT---TATTAGAAGTGTCCTGTAATAACAGACACGCTGTCTTAAAAAT s fr1.chrUn 199215731 201 - 349519338 ---T--TTACCTTTTGTTCACAGAGAGACGGCGCTGCTAATCGACCCAAAGAACTCCTGCTCGTCTTCTAGGCAGTGGGTGGCACTGGTGGTGGGACACGAACTCGCCCACCAGTGGTTTGGAAACTTAGTCACTATGGTAACCTGTTAATAATTTGAA---------------------TGCC--------------AGTTTG--ATAA-----TATGGACATTTTTGTTT---------------AATGTGAGATTAATAA- s danRer1.chr11 6196661 226 + 27258617 --------TTTGTTCTCTCATAGAGAGACAGCGCTGCTGATTGACCCAAAGAATTCGTGTGCATCGTCCCGCCAATGGGTCGCTCTTGTAGTCGGTCATGAACTGGCACATCAGTGGTTCGGGAATCTAGTTACCATGGTA-------AGTGCCTTCAGATGTTCAG-------TGTGGTTGGT--GTGCCATATATAGTTTTGTAGCTG-----CATGA-TTAATCAAAAT--------AAATGCTAAAGTCATGATATGGCT a score=-492.0 s hg17.chr17_random 878040 4 + 2618010 TAAT s panTro1.chr19_random 41890725 4 + 57627672 TAAT s mm5.chr11 24736908 4 - 121648857 TAAT s rn3.chr10 24755159 4 - 110733352 TAAA s galGal2.chrUn 27913796 4 - 165033910 TGCC s fr1.chrUn 199215934 2 - 349519338 TG-- s danRer1.chr11 6196887 4 + 27258617 TAGT a score=-2161.0 s hg17.chr17_random 878040 4 + 2618010 ---TAAT s galGal2.chrUn 27913796 4 - 165033910 ---TGCC s fr1.chrUn 199215934 2 - 349519338 ---TG-- s danRer1.chr11 6196887 4 + 27258617 TAGT--- a score=2343.0 s hg17.chr17_random 878044 5 + 2618010 TGAGT s panTro1.chr19_random 41890729 5 + 57627672 TGAGT s rn3.chr10 24755171 5 - 110733352 TATGT s canFam1.chr9 16602436 5 + 53642819 TGAAT s galGal2.chrUn 27913800 5 - 165033910 TTATT s fr1.chrUn 199215936 5 - 349519338 TGTGT s danRer1.chr11 6196892 5 + 27258617 CAAAT a score=-781.0 s hg17.chr17_random 878049 5 + 2618010 GATAG--- s fr1.chrUn 199215941 5 - 349519338 GAAAG--- s danRer1.chr11 6196897 5 + 27258617 ---AACTA a score=1001.0 s hg17.chr17_random 878049 3 + 2618010 GAT s panTro1.chr19_random 41890734 3 + 57627672 GAT s rn3.chr10 24755176 3 - 110733352 GCT s canFam1.chr9 16602441 3 + 53642819 GAT s fr1.chrUn 199215941 3 - 349519338 GAA s danRer1.chr11 6196897 3 + 27258617 AAC a score=-459.0 s hg17.chr17_random 878052 2 + 2618010 -AG s panTro1.chr19_random 41890737 2 + 57627672 -AG s rn3.chr10 24755326 2 - 110733352 -AA s canFam1.chr9 16602444 2 + 53642819 -AG s fr1.chrUn 199215944 2 - 349519338 -AG s danRer1.chr11 6196900 2 + 27258617 TA- a score=5748.0 s hg17.chr17_random 878054 13 + 2618010 AAAAGTATTATTT s panTro1.chr19_random 41890739 13 + 57627672 AAAAGTATTATTT s rn3.chr10 24755328 13 - 110733352 AAACATTTTCTTT s canFam1.chr9 16602446 13 + 53642819 AAAATCCTTGTTT s galGal2.chrUn 27913805 13 - 165033910 ATCAGTTTCTTCT s fr1.chrUn 199215946 13 - 349519338 AAAACTATAAAAT s danRer1.chr11 6196902 13 + 27258617 AAAAGTATGACTT a score=-8337.0 s hg17.chr17_random 878067 70 + 2618010 TAAAAGGTCCACTTTG-AAAGGGCTTAT---CAGAATCTCTGC----------------------------------------------------------------ATTGAACAAGGGCA-------------TATG-------------GACAGTCTTTATT s panTro1.chr19_random 41890752 70 + 57627672 TAAAAGGTCCACTTTG-AAAGGGCTTAT---CAGAATCTCTGC----------------------------------------------------------------ATTGAACAAGGGCA-------------TATG-------------GACAGTCTTTATT s rn3.chr10 24755341 160 - 110733352 TAAAAGGTCTGCTTTGCAAAGCATTTAT---CAGGG-CTTTGCGGATACCTCAATGGTTAGATACTTGCCCAGTTTCAGGTCCTTAGATTCCCAGGTACCTAGAGGAATTAAGGGAAGGGAGAAGAGAGATATTTATGAGAACAGAGATGAGACCGTAGTTATT s canFam1.chr9 16602459 67 + 53642819 TAGAAAGTCCACTTTGAACAGTATTTAT---CAGAA--TCTGT----------------------------------------------------------------GTCAGTCAAGAGCA-------------TGTG-------------GACAGTC--CATT s galGal2.chrUn 27913818 69 - 165033910 TTATTAGTGTGTCCTGTAAAGGTATCTG---TAGAT-CTTTTC-----------------------------------------------------------------TAAGACAGGAGAA-------------GACC-------------GAGTATGCTCATT s fr1.chrUn 199215959 69 - 349519338 TATAATGCTGAATTGGTAGAAACAATATGGATAGGA--TTTAT-----------------------------------------------------------------ATGATCGAGGGGA---------------TG-------------GTTTCTTATTACT a score=14947.0 s hg17.chr17_random 878137 61 + 2618010 CAACAG------ACACTTCCTAAACTGTTCTAAAATTTGTCTGCAAATGGGAAAAGTCAAGATACTA s panTro1.chr19_random 41890822 61 + 57627672 CAACAG------ACACTTCCTAAACTGTTCTAAAATTTGTCTGCAAATGGGAAAAGTCAAGATACTA s rn3.chr10 24755501 58 - 110733352 TAACAG---GAAATGTTTTGTAA------CTACAATTCATTTGCAAATAGGAAATGTTAAGGTACTA s canFam1.chr9 16602526 63 + 53642819 CAACAC---AAAATACTTCCTAAATTGTTGTAGAATTTGCCCGCAAATGGGGAA-GTCTTGATACTA s fr1.chrUn 199216028 63 - 349519338 CAATTCACTAAATTTCTTTTTAAATTGGTCC----CTTGTCTTCATTCATTTTGAATAGAGATACTG a score=24550.0 s hg17.chr17_random 878198 144 + 2618010 ATTTGGGTGAGAGGAAAAGATT-CCTCTTAGGTGTAGATGAATGAATCATGCAGTGAGATTCCAGGCTAACTGTAGTTTCTTGAATCTTATTTGTTAATCTGACTCACAGCTGAAAAGTAACCTGATGAATAACAGACTGATCTT s panTro1.chr19_random 41890883 145 + 57627672 ATTTGGGTGAGAGAAAAACATTCCCTCTTAGGTGTAGATGAATGAATCATGCAGTGAGATTCCAGGCTAACTGTAGTTTCTTGAATCTTATTTGTTAATCTGATTCACAGCTGAAAAGTAACCTGATGAATAACAAACTGATCTT s rn3.chr10 24755559 108 - 110733352 ATTTGGGTGAGAGAAAAA-ATT-TGTCATAGTAAAAAAGGATTGAACTCCGCAGTGAGATTCCAGGCTAGC--TAGT---TTAAGTTATCTTTG-----------CATAGTTTA-------------------CAAATTGAACTG s canFam1.chr9 16602589 114 + 53642819 ATTTGGGTGAGAGAG----ATT-------AGGTATA-------------------GAGATTTCAGGCTAACTATAGTTTCTTGAG-CATATTTATTATGTAGTTCAGTCGCTAAAAAGAAACCTGATAAATAACAATGTGGTCTT a score=207538.0 s hg17.chr17_random 878342 519 + 2618010 TAATTAGAGAGAAATGTTTTTAGGAGTCAGTTTTTTCATTGCCTAAAATGTTAAGTTGAAATTTAAT-GAAATAAAAGT---AAACAAACTGCAGAGTGACTGCAGAATAAAGCTGTATTAAAA-TTCCAGCTGTTCTGTTGAAATCCTTA-------TAATGTTTGCAG-TAATGATCTCTGTCCTTCAGTCCTGA----TTTTTCACTCTTACTCTAAGT-AAATACTATTTATGAATGCCAACTGTGTTAGAGCTTGGGAGCACAGGATTTAATAAGTGAACTAGATGTACCTCTGCAATTAAATAACTGGATATTCTGGAGCCAGCTAGATTCCCTGA---CATTTTAGGCTGCCAAAGAGCAGAACCTGATTTGAATGTAGATTGAGTCCATAC--GTTATATAAATAAG----AATGTAAGACATTTATCAACTGTTACGTGTCTCAGAGAGTTTCTACAGAAAGTCAACCCTTGAAAATAAATCTTTTCCTTTTATTTTGGATGTTTAAAA----TTTTACAGGTG-AAAAAAATTCTTTGAAA s panTro1.chr19_random 41891028 524 + 57627672 TAATTAGAGAGAAATGTCTTTAGGAGTCAGTTTTTTCATTGCCTAAAATGTTAAGTTGAAATTTAAT-GAAATAAAAGT---AAACAAACTGCAGAGTGACTGCAGAATAAAGCTGTATTAAAA-TTCCAGCTGTTCTGTTGAAATCCTTA-------TAATGTTTGCAGATAATGATCTCTGCCCTTCAGTCCTGA----TTTTTCACTCTTACTCTAAGT-AAATACTATTTATGAATGCCAACTGTGTTAGAGCTTGGGAGCACAGGATTTAATAAGGGAACTAGATGTACCTCTGCAATTAAATAACTGGATATTCTGGAGCCAGCTAGATTCCCTGA---CATTTTAGGCTGCCAAAGAGCAGAACCTGATTTGAATGTAGATTGAGTCCATACTAGTCATATAAATAAG---AAATGTAAGACATTTATCAACTATTACGTGTCTCAGAGAGTTTCTACAGAAAGTCAACCCTTGAAAATAAATCTTTTCCTTTTATTTTGGATGTTTAAAA----TTTTACAGGTGAAAAAAAATTCTTTGAAA s mm5.chr11 24737233 500 - 121648857 TAAACACAAAAACGTGGTTATGTAAGTCATTAGTGTATTTGCCTAAAA---TAAGGTGAAGTT---T-GAAGTAAAATTTTAAAAAAATCT---------------------GTTGAACTAAAA-ATCTAACTATCTAATTGGAGTTTTCAGT-----TACTGTATGTAT-------TTTCTATCTGTTAATGCTGG----TGTTTCACCTTTACTATAAATAAAATTCTATCTGTGGAAGCCAATTATGTTAGTGTTTTGAAATACAGGGTTTAATAAATGAATTAGACTTAACTGTGCCCTGAAAGAACTGGAGA--CTGGACTTAGCCGGATTCCTTGACAGCACCATAGACTGCCAAAGAGTTGAACCTGACTTAGATGTTGGTTAAGTCCATGT--GCCTTAGAAATGAGT-GAAAATTAAGATGTGTTTCAACTATGACCTAGCTAAGAACACTTCTAAAGAAAGTCAGTCTCTGAAAATACCCTCTTATATTTTTCTTCCAATGCTTAAAACTTTTCTTACAGGTT-AGGTGGCTTTTTAAAAA s rn3.chr10 24755669 505 - 110733352 TAAACACAAAAAAGTGGTTATGTGAGTCATTATTGTAGTTGCATAAAA---TAAGGTGAAGTT---T-GAAATAAAATTTTTAAAAAAT-----------CTGTAGAATAAAGTTCTACTAAAA-TTCTAACTATGTAATTGGAGTTTTCA---------GTTACTGTAT-------TTTATATCTGTTAATCCTGA----TGTTTCACCTTTACTGTAAATAAAATTCTATCTGTGGGAGCCAATTATGTTAGTGTTTTGAAATACAGAGTTTAATAAATGAATTAGACTTACCTGTGCCCTGAAAGAACTGGAGA--CTGGACTTGGCCAGATTCCTTGACAGCACCATGGGCTGCCAAAGAAGTGAACCTGACTTAGATATTGGTTAAGTCCATGT--GTACTAGAAATGAGCAAAAATGTGAGGTGTGTTTCAACTATGACCTAGCTAAGAACATTTTTAAAGAAAGTCAGTCTGTTAAAATAAGCTCTTCCACTTTTCTTTGTATGCTTAAAATTTTTCTTATAGATT-AGGTAGCTTTTAAAA-- s canFam1.chr9 16602703 527 + 53642819 TGATTAGCTTGAAATGTTTTTAGGAATCAGT-TTCTCATTGCCTGAAATGTTAAGTTGAAATTTGTTAGAAATGAAAGC---AAAGAAACCAGGAAATAACTGTAA------ACTATATTAAAATTTCCAGCTCTCCCATTGAAATTGTTGTTTATTATAATGGTTGAAT-----GATCTCTGC---TTAAGCCTGGACCTTTTTTCCTTCTTACTCCAAAT-GAGTACTGTTTATGTCGGCTAGCTGTCTTAGAGCTTGGGAGCACAGAGTTTAATGAGTGAACTAGAAATACCTCTGCAAAGAAAGAACTGGGGCTTCTGAAGCCAGCCAAATTCCCTGATAGCATTTTAGGCTGCCAAAGAGCAAAACCTGACTTGGATGTTAGTTGAGTCCATAT--GTCACAGGAATAAGCAAGAAAGTAAGACATTTAGCAACTATTACATGTCTGAGACAGTTTTTAAAGAAA-CCAGCCCTTGAAATTAAACCATTTCTTTTTGCTTTGGATGTTTAAAATTTTACTTAGGTGTG-AAAAAAATGTTTGAAA- a score=1512.0 s hg17.chr17_random 878861 8 + 2618010 TATAATTT s panTro1.chr19_random 41891552 8 + 57627672 TATAATTT s rn3.chr10 24756174 8 - 110733352 AATAACTT a score=27811.0 s hg17.chr17_random 878869 310 + 2618010 CAggccgggcacggtagctcacgccagtaatcccagcactttgggaggccgaggcgggtggatcacttgaggtcacgtgtttgagaccaccctgaccaatgttgcgaaactccatctccactaaaaaaaaaatagaaaattagctgggcgtggtggtatgcacctgtaatcctagctactctggaggttgaggcagaagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcacgccactgcactccagcctgggcaacaagagcgaaactccatctcaaaaaaaaaaaaaa-----aaagaaa s panTro1.chr19_random 41891560 314 + 57627672 CAggccgggcacggtagctcacgccagtaatcccagcactttgggaggctgaggcgggtggatcacttgaggtcacgtgtttgagaccaccctgaccaatgttgcgaaaccccatctccact-aaaaaaaaatagaaaattagctgggtgtggtggtgtgcgcctgtaatcctagctactctggaggttgaggcagaagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcacgccactgcactccagcctgggcaacaagagcgaaactccatctcaaaaaaaaaaaagaaatataaagaaa a score=1272.0 s hg17.chr17_random 879179 3 + 2618010 TAT s panTro1.chr19_random 41891874 3 + 57627672 TAT s mm5.chr11 24737901 3 - 121648857 TAC s canFam1.chr9 16603230 3 + 53642819 TAT a score=16060.0 s hg17.chr17_random 879182 36 + 2618010 AA-TTTCATGTGGAACTATGT--GTTGGTGCCTGTATTC s panTro1.chr19_random 41891877 37 + 57627672 AATTTTCATGTGGAACTATGT--GTTGGTGCCTGTATTC s mm5.chr11 24737904 37 - 121648857 AA-TATCAT-TGGAACTATATGAGTTAATGCCTGTATTA s rn3.chr10 24756332 38 - 110733352 AA-TTTTCTTTGGAACTATATGACTTAATGCCTGCATTC s canFam1.chr9 16603233 38 + 53642819 AA-TTTCATGTAGAATTAAGTATGCTAAGACCTGTATTC a score=11509.0 s hg17.chr17_random 879218 54 + 2618010 AAATATGTGAAGAAATGGC--CTTTTCTTCTAATGCAGCGAG--TTTGCTACTTTGTA s panTro1.chr19_random 41891914 54 + 57627672 AAATATGTGAAGAAATGGC--CTTTTCTTCTAATGCAGCGAG--TTTGCTACTTTGTA s rn3.chr10 24756370 58 - 110733352 TAATGTGTGTAAAAATTTCTATTTTCCCTCCGGTTTTGGAGGTTTTTGTTGTTTTGTG s canFam1.chr9 16603271 50 + 53642819 AAATATGTACAGAAATATT--CTCTTCTCCTAATGTAGCAAG--TTTGTTGCTA---- a score=4924.0 s hg17.chr17_random 879272 12 + 2618010 CCAAATAATTTT s panTro1.chr19_random 41891968 12 + 57627672 CCAAATAATTTT s rn3.chr10 24756728 12 - 110733352 CCTACCAATTTT s canFam1.chr9 16603321 12 + 53642819 CCAAACAATTTT a score=48219.0 s hg17.chr17_random 879284 221 + 2618010 TTTGCTTGGCTTTGAGATAAC-------TTTATGATTTTATT-----TTGAA---------------ACTACAAGCAATAAATTTTAGTAGGGGAAATGTGTAC--ATTCTTAT------------------------------TAAACAACTTTTTACTGGTTTTATGTAACTATTCTAGTTA-------------------TTAGA------ACTGAAATTCCAAGGGCTTAGGGATAGGTTGGAAAATAAGTTTCATTTTATGCTAGTTTATTTTAGGAAG------------CTACTAGGCA-------------AATAGCCACTT- s panTro1.chr19_random 41891980 221 + 57627672 TTTGCTTGGCTTTGAGATAAC-------TTTATGATTTTATT-----TTGAA---------------ACTACAAGCAATAAATTTTAGTAGGGGAAATGTGTAC--ATTCTTAT------------------------------TAAACAACTTTTTATTGGTTTTATGTAACTATTCTAGTTA-------------------TTAGA------ACTGAAATTCCAAGGGCTTAGGGATAGGTTGGAAAATAAGTTTCATTTTATGCTAGTTTATTTTAGGAAG------------CTACTAGGCA-------------AATAGCCACTT- s mm5.chr11 24738290 254 - 121648857 TTTTCTTGGCACATAGCAAGT-------CTTCTATTTCTATTCAACCTTGAGAAAAATTATTTGTTTATTACCAGCAGTAAATTTTAGCGGAGGAAATATGCACTTACTGTTTT------------------------------GAAACAACTTCTTTCTGAGCTTATGTAACTGTCTTTGTTA---GATGCCAATTGT---TTCATAG-----ACCGAAATTCCTAAGGATTAGTGTTCAGTTG--------------CTCTGAACTAGCTTACCTCAGTGGGACTTATTAATACCTAGTTGACA-------------AACAACC-CTT- s rn3.chr10 24756741 227 - 110733352 TGTGCTCAACCTTGAGAAAAA-------ATTGT--------------TT------------------ATTACTAGCAGTAAATTTTAGCAGAGGAAATACACACTTACTGTTTT------------------------------AAAACAACCTTTTGCC---CTTACGTAATTGTCTTTATTA---GATGCCAGTTGT---TTCATAG-----ACTAAAATTCCAAAGGGCTAGTGTTCAGTAA--------------CTTTGAACTAGCTCATCTTAGTGGGGCTTATTAACACCTAATTGATACTTAGA-----TGAACAGCC-CTT- s canFam1.chr9 16603333 300 + 53642819 ---TGTTAGCTCTGAGCAGTCTTCATTTTTTATGATTTTATT-----TTTAA---------------ACTACCAGCCATACATTTTAATAGGGGAAATGTGCAT--ATTCTCATATAGCTTCTAAAGAACTTTTTACAAAAAAATAAAGATCTTTTTACTGGATTTGAGTAACTGTTCTATTTATTAGATGTCAATTGTTTCTTTAAAACAAACTCTGAAATTT--AAGGACTCATAATAGGTTGGTGAATAAACTAG-CTGTGTACCAGCCTATCTTCGTGGAAGCTACTAGT--TAAGTAGGTGCCCAAAGCATTTAGACAGCC-TTCC a score=7786.0 s hg17.chr17_random 879505 17 + 2618010 ATCACTTAATATCAAAA s panTro1.chr19_random 41892201 17 + 57627672 ATCACTTAATATCAAAA s mm5.chr11 24738544 17 - 121648857 ATTACTTAATATTAAAA s canFam1.chr9 16603633 17 + 53642819 ATCACTTAGTATTAAAG a score=-864.0 s hg17.chr17_random 879522 4 + 2618010 TAAt----- s panTro1.chr19_random 41892218 4 + 57627672 TAAt----- s mm5.chr11 24738561 9 - 121648857 AAAAATATT a score=59302.0 s hg17.chr17_random 879526 639 + 2618010 tttttttttaagacagagtctcactctgtcagttaaactggagtgcaatggcacaatcatggttcattacagtcttgacctctgggctcaagcaatcctcctgtctctgcctcctgagtagctgcaattacaggtgtgtggcaccatgcccagcttatttttgcactttttgtagagacaaggtttcactgtattgccttttgtagagacagggtttcactttgttgcctaaactggtctcaaactcctgggctcaagcaatcctcccacct-cagcctcccaaagtgctgggattacaggcatgagctaccacacctggccTTTTCTGGGGGGACTGGTTGGGGATGGAGAataggatctcactttgttacccaagccggagtgcagtggcacaatcatgggtcagtgcagcttcatcttcctgggcttatgtaatcctcttgcctcagcctcccaagtagctgggaccacaggtgtgtgtcaccatgaccagctaatttttttttactttttaatttttttagagatggagtctcactgtgttacccaggcttatctcaaactcctgggctcaagtgatcttcctgccttgacctcccagagtattggcattacaggagcaagccattgtgcctggcc s panTro1.chr19_random 41892222 640 + 57627672 tttttttttaagacagagtctcactctgtcacttaaactggagtgcagtggcacaatcatggttcattacagtcttgacctctgggctcaagcaatcctcctgtctctgcctcctgagtagctgcaattacaggtgtgtggcaccatgcccagctaatttttgcactttttgtagagacaaggtttcactgtattgccttttgtagagacagggtttcactttgttgcctaaactggtctcaaactcctgggctcaagcaatcctcccacctccagcctcccaaagtgctgggattacaggcatgagctaccacacctggccTTTTCTGGGGGGACTGGTTGGGGATGGAGAATGggatctcactttgtcacccaagccggagtgcagtggcacaatcatgggtcagtgcagcttcatcttcctgggcttatgtaatcctcttgcctcagcctcccaagtagctgggaccacaggtgtgtgtcaccatgaccagctaatttttttttactttttaatttttttggagatggagtctcactatgttgcccaggcttatctcaaactcctgggctcaagtgatcttcctgccttgacctcccagagtattggcattacaggagcaagccattgtgcctggcc a score=1419.0 s hg17.chr17_random 880165 5 + 2618010 TGCTT s panTro1.chr19_random 41892862 5 + 57627672 TGCTT s canFam1.chr9 16603735 5 + 53642819 TGCTT a score=17850.0 s hg17.chr17_random 880170 79 + 2618010 TCTTTCACTAATAGGCTTAATCAACtttaataaaatttaga-ttaagatc---tttaaaa---------ttttttaaaaaCTGATTTTATCT- s panTro1.chr19_random 41892867 80 + 57627672 TCTTTTACTAATAGGCTTAATCAACtttaataaaatttagatttaagatc---tttaaaa---------tttttttaaaattgattttatCT- s rn3.chr10 24757025 70 - 110733352 TACTTTACTAAGAGGTTTAATCAACATCAATGAAAATTAGA-------------CTGATG---------TGTTCTAAAGATAGGTTTTAAAT- s canFam1.chr9 16603740 92 + 53642819 TCTTTTTGTAAGAGATTTAGTCAACTTTAATAAAACTTAGA-TTAAAATCTCTTCTAAAAATGTGTGGGTTTTTTTAAAGTTGGTTTTAATCT a score=50580.0 s hg17.chr17_random 880249 335 + 2618010 ----GTCACTCATATTCTTTGTCCATTCCATTTACTATGCATTCTTATTTAA-CAGGTGATAATTTTATATTCCATAAGTGCTTAAACACCATTCATTACTAAACT--------------ACATTTTTGTTTAATTTCACATAATTTTTATATAAGCAGTACTCTTTCTCAGTTTCTCTTGAACATTCAACTCATTAGT---GAGTGGTTTTCCCCAGTCA-------------TTTCCATTTTTCTTTATTTGGCTCTGATAGTTTTCTGTTTTTGTTTTTCAGAGATAATCCTTTACTATACTAAATTCTACGTG--ATTATATTTTCCACCTCTATTTGCCTATATTTATCTGCTGTCTTTTCCTTTTC s panTro1.chr19_random 41892947 336 + 57627672 ----GTCACTCATATTCTTTGTCCATTCCATTTACTATGCATTCTTATTTAACCAGGTGATAATTTTATATTCCATAAGTGCTTAAACACCATTCATTACTGAACT--------------GCATTTTTGTTTAATTTCACATAATTTTTATATAAGCAGTACTCTTTCTCAGTTTCTCTTGAACATTCAACTCATTAGT---GAGTGGTTTTCCCCAGTCA-------------TTTCCATTTTTCTTTATTTGGCTCTGATAGTTTTCTGTTTTTGTTTTTCAGAGATAATCCTTTACTATACTAAATTCTACATG--ATTATATTTTCCACCTCTATTTGCCTATATTTATCTGCTGTCTTTTCCTTTTC s canFam1.chr9 16603832 323 + 53642819 GTGGCTCATTTATATTCTTTGTCCGTTCTACT--------ATTCTTA-TTAG-CAGGTGAGAATTTTGT-----ATAGATACTTAAACACCATTCATCACTGAATCTACTTACTGCCATGATAATTCTG-TTAATTTTACCTAGTCTTTATATAAGCAGTACTGCTTTTCTGTTTATTTAGAAAGTTTAACTTGTCAGTCAACAGTGATTTTTCCCAGTCATTATTGGACATCCTTTGCAGTTTTCCTTG--TGGTCCTGGTATCTTTCTGG----------------------TTTATTAAACTAAATTTTACCTGACACTACAGGTTC---------TCACCTACATTTATCTGCTCTCTTCCCCTCTTC a score=10175.0 s hg17.chr17_random 880584 49 + 2618010 CATATATGGGCTTAT----TTTTTTTTTTCCCTCTTCTTCCTTTTCTACCTTT s panTro1.chr19_random 41893283 49 + 57627672 CATATATGGGCTTAT----TTTTCCCTCTCACTCTTCTTCCTTTTCTACCTTT s rn3.chr10 24757987 53 - 110733352 CATGCCTGACCTTTTTTTCTTTTCCTTTTTCTTTTTCTTTTTTTTTTTTTTTT s canFam1.chr9 16604155 53 + 53642819 CGTATAAGGACTTTCTCCCCCACCCTCTTTTTCCTTCCATCTTTTCTAGCTTT a score=3560.0 s hg17.chr17_random 880633 21 + 2618010 GGTATTTAAAAAGTTACTTAG s panTro1.chr19_random 41893332 21 + 57627672 GGTATTTAAAAAGTTACTTAG s canFam1.chr9 16604208 20 + 53642819 GGTA-ATAAAAAGTTTCTGAG a score=32836.0 s hg17.chr17_random 880654 362 + 2618010 GActgagtgcactggcttacgtgtgtaatcccagcactttggcaggctgaggcgggaggattgcttgagccccggtgttcaaggctgcagtgagctacgatggtgcccctgccactccagcctgggcaacagaatgagaccctgtctGGGTTTGGGGGAGAAGTTATTTACAATGTTTTGAAAATATCCTTTGGCccaggcatggtggctcacacctgtaatcccagcactttgggaggccga-ggcaggtggatcacttgaggtcaga-agtttgagaccagcctggccaacatggcaaaaccccatctctactaaaaatacaaaaattagccaggcatagtgatacatgcctgtaatcccag s panTro1.chr19_random 41893353 364 + 57627672 GActgagtgcactggcttacgtgtgtaatcccagcactttggcaggctgaggcgggagggttgcttgagccccggtgttcaaggctgcagtgagctacgatggtgcccctgccactccagcctgggcaacagaatgagaccctgtctGGGTTTGCGGGAGAAGTTATTTACAATGTTTTGAAAATATCCTTTGGCccaggcatggtggctcacacctgtaatcccagcactttgggaggccgatggcaggtggatcacttgaggtcagagagttccagaccagcctggccaacatggcaaaaccccgtctctactaaaaatacaaaaattagccaggcatagtgatacatgtctgtaatcccag a score=4731.0 s hg17.chr17_random 881016 101 + 2618010 ctactggtgaacactccagcctggtgacaaaacaaga-ctttgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaggaaaagaaaa s panTro1.chr19_random 41893852 74 + 57627672 ctactggtgaacactccagtctggtgacaaaacaagaactttttctcaaaaaaaaaaagaaaa----------------------------ggaaaagaaaa a score=2123.0 s hg17.chr17_random 881117 13 + 2618010 TGACCCTCAGATA s panTro1.chr19_random 41893926 13 + 57627672 TGACCCTCAGATA s canFam1.chr9 16604241 13 + 53642819 TGTCTCTCAGGCC a score=16379.0 s hg17.chr17_random 881130 61 + 2618010 TAATTCTAATATCACCAGTTGGCCTTTCTTGACATCTCTTTTAGTCTTCTCTCTTTTTCAG s panTro1.chr19_random 41893939 61 + 57627672 TAATTCTAATATCACCAGTTGGCCTTTCTTGACATCTCTTTTAGTCTTCTCTCTTTTTCAG s rn3.chr10 24758473 50 - 110733352 TGATCATAGTGTCACCAGTTGGCATTTCTTTTATTCTCTTT---TTTTCTCTC-------- s canFam1.chr9 16604254 61 + 53642819 TGATGCCAAAGTCAGCAGTTGGCCTTTCTTAGCATCTCTTTTAAGCATCTTTTTTGTTCGG a score=38628.0 s hg17.chr17_random 881191 96 + 2618010 AAATGTGAGTTCTTTGCGAAATGTTTTGAACTGAATTTTAGGTCATTAAATTGTGAGTTTTGGAATATAGTGGAAGGGACATGTGAGTGTTTTAGA s panTro1.chr19_random 41894000 96 + 57627672 AAATGTGAGTTCTTTGCCAAATGTTTTGAACTGAATTTTAGGTCATTAAATTGTGAGTTTTGGAATACAGTGGAAGGGACATGTGAGTGTTTTAGA s mm5.chr11 24739326 93 - 121648857 AAATATGAGTTCATTACTAACTGGTTTCTGTTGAGTTTTACTTTACAAAATTACAAATTTTCAAGTACAATAGAAGGGAGACATG---TTTTTCCA s rn3.chr10 24758523 93 - 110733352 AAATATGAGTTTATTGATAACTGGTTTCTGTTGAATTTTACTTTACAAAGTTACAGATTTTCAAGTACAGTAGAAGGGAGACATG---CGTTCCCA s canFam1.chr9 16604315 89 + 53642819 ACATGTGAGTGAGTTACTAAATATTTTTCACTGAATTTTGGCTTATTAAGTTGTAAATT-----GAATAGTGGAAGGG--ACGTGAGTTTTTCAGA a score=5567.0 s hg17.chr17_random 881287 26 + 2618010 TTAGTAGAATGACAATCATTTCAATT s panTro1.chr19_random 41894096 26 + 57627672 TTAGTAGAATGACAATCATTTCAATT s mm5.chr11 24739419 26 - 121648857 GTAATGCAGTGACTATTCCTATGTGT s rn3.chr10 24758616 26 - 110733352 GTAATGCAGTAACTGCTCCTATGTGT s canFam1.chr9 16604404 26 + 53642819 TTAGTGGAATGATACGTATTTTGTTT s galGal2.chrUn 27914005 25 - 165033910 TTGGTA-AATGGAAGCCCTTGGAATC a score=5072.0 s hg17.chr17_random 881313 5 + 2618010 TCTTT s panTro1.chr19_random 41894122 5 + 57627672 TCTTT s mm5.chr11 24739445 5 - 121648857 CCTTC s rn3.chr10 24758642 5 - 110733352 CCCTC s canFam1.chr9 16604430 5 + 53642819 TCTTT s galGal2.chrUn 27914030 5 - 165033910 TTTTT s danRer1.chr11 6201916 5 + 27258617 TCTCT a score=355832.0 s hg17.chr17_random 881318 200 + 2618010 AAGT-ATTTTCATCTTC-TGTTTT-TAGGAATAGTGGACTCATCTTTGGTTAAATGAAGGTTTTGCATCCTGGATTGAATATCTGTGTGTAGACCACTGCTTCCCAGAGTATGATATTTGGACTCAGTTTGTTTCTGCTGATTACACCCGTGCCCAGGAGCTT-GACGCCTTAGATAACAGCCATCCTATTGAAGTGAGCCATA s panTro1.chr19_random 41894127 201 + 57627672 AAGT-ATTTTCATCTTT-TGTTTT-TAGGAATGGTGGACTCATCTTTGGTTAAATGAAGGTTTTGCATCCTGGATTGAATATCTGTGTGTAGACCACTGCTTCCCAGAGTATGATATTTGGACTCAGTTTGTTTCTGCTGATTACACCCGTGCCCAGGAGCTTTGACGCCTTAGATAACAGCCATCCTATTGAAGTGAGCCATG s mm5.chr11 24739450 201 - 121648857 ACTCGATCTGCCTTTTT-CTTTTT-TAGGAATGGTGGACTCATCTCTGGTTGAATGAAGGCTTTGCATCCTGGATTGAGTATCTTTGTGTAGACCACTGCTTTCCAGAGTATGATATCTGGACTCAGTTTGTTTCTGCAGATTATACCCGTGCCCAGGAACTT-GATGCCTTAGATAACAGCCATCCTATTGAAGTGAGCTATA s rn3.chr10 24758647 201 - 110733352 ACTC-GCTTCTACCTTTACTCTTT-TAGGAATGGTGGACTCATCTCTGGTTGAACGAAGGCTTTGCATCCTGGATTGAGTACCTTTGTGTAGACCACTGCTTCCCAGAGTATGATATCTGGACTCAGTTTGTTTCTGCAGATTATACCCGTGCCCAGGAACTC-GATGCCTTAGATAACAGCCATCCTATTGAAGTGAGCTATA s canFam1.chr9 16604435 200 + 53642819 ACAC-ATTTCTTTCTTT-TGTTTT-TAGGAATGGTGGACTCATCTTTGGTTAAATGAAGGCTTTGCATCATGGATTGAATATTTGTGTGTAGACCACTGCTTCCCAGAATATGATATCTGGACTCAGTTTGTATCTGCTGATTACACCCGTGCCCAGGAACTT-GATGCTTTAGATAACAGCCATCCTATTGAAGTGAGCCATA s galGal2.chrUn 27914035 201 - 165033910 CTTC-ATTCCACCTTCT-CATTTTCCAGGAATGGTGGACCCATCTTTGGCTGAACGAAGGGTTTGCCTCCTGGATTGAGTACCTGTGCGTCGATCACTGCTTTCCAGAGTATGACATCTGGACTCAGTTTGTTTCTGCTGATTACACACGAGCTCAAGAGCTC-GATGCCTTAGACAACAGTCATCCGATTGAAGTAAGTCTTG s fr1.chrUn 199216093 200 - 349519338 ATAC-ACATTTTATCTG-TGTAAA-CAGGAATGGTGGACCCATCTGTGGCTTAATGAAGGATTTGCATCATGGATCGAGTACCTTTGTGTGGACCACTGCTTCCCAGAATACGACATCTGGACCCAGTTTGTGTCGGCTGACTATACCCGTGCTCTGGACCTG-GACGCTTTGGACAGCAGCCATCCCATAGAGGTTAGATACA s danRer1.chr11 6201921 200 + 27258617 CTCT-CTTTTTTTCCTC-TCTCTG-CAGGAATGGTGGACCCATTTATGGCTTAATGAAGGCTTTGCATCTTGGATCGAGTACCTCTGTGTGGACCACTGTTTTCCCGAATACGACATCTGGACCCAGTTTGTATCTGCTGATTACACCAGGGCTCTGGACCTG-GATGCGCTAGATAACAGCCACCCTATTGAGGTCCGCAAGA a score=4889.0 s hg17.chr17_random 881518 5 + 2618010 --CTTTC s panTro1.chr19_random 41894328 5 + 57627672 --CTTTC s mm5.chr11 24739651 5 - 121648857 --CTTTG s rn3.chr10 24758848 5 - 110733352 --CCTTG s canFam1.chr9 16604635 5 + 53642819 --CTTTT s galGal2.chrUn 27914236 7 - 165033910 TCCTTCC s fr1.chrUn 199216293 7 - 349519338 GACTTTC a score=24632.0 s hg17.chr17_random 881523 104 + 2618010 TAACCATTAGCCTATGACTGCTCTCATTTACAAT--GAAATACGTAATTTGTTACAT----AGA---TACTTTGGACTT---TGAAAAGA------------------AGAGAAAATAGCATGGGTGATTTT---------AC s panTro1.chr19_random 41894333 104 + 57627672 TAACCATTAGCCTATGACTGCTCTCATTTACAAT--GAAATACGTAATTTGTTACAT----AGA---TACTTTGGACTT---TGAAAAGA------------------AGAGAAAATAGCATGGGTGATTTT---------AC s mm5.chr11 24739656 96 - 121648857 CAATCA---------------------TTTCAGT--GAAATAAGTAATTTGTTGTGTCTCAGGA---TGTTTAGGATTC---TGAAATGC------------------AAAAAAAGCTGCATGGATGGCTTCCTTTGGGTGAC s rn3.chr10 24758853 114 - 110733352 CAACCA---------------------TTTCAGT--GAAATAAGTAACTTGTTATGTCTCAGGA---TGTTTAAGATTC---TGAAATGCAAAAAAAGAAAAAAAGAAAAAAAAAGCTGCATGGGTGATTTCCTTTGTGTGAT s canFam1.chr9 16604640 107 + 53642819 CAATCATTGGTCT----TTACTCTCATTTTTAAT--GACATAAGTAATTTGTTACAC----AGA---TACTTAGGATCC---TGAAAGG-------------------AAAGAAAATTGCACAGGCAATTCA-CCTGTTTGTA s galGal2.chrUn 27914243 116 - 165033910 TAGTGGTTATCTCCCTTCTTTTTTTTTTGTCAGCTGGATGTGAGTTTTTTGTTCCCTGTTAAGAAAGAACTGTACACTCACTCGTAATGC------------------AAAGAAAAACCCAAAATTGCATTC---------AC a score=30196.0 s hg17.chr17_random 881627 80 + 2618010 TGGTTCAT----------ATTTCTAGT-----CTTGAAAAGCTAGTAAGTCTAAGTTCTAATTAAACATTTCTTTTAAAGGTAGGCAGTAAAAAA s panTro1.chr19_random 41894437 80 + 57627672 TGGTTCAT----------ATTTCTAGT-----CTTGAAAAGCTAGTAAGTCTAAGTTCTAATTAAACATTTCTTTTAAAGGTAGGCAGTAAAAAA s mm5.chr11 24739752 79 - 121648857 TGATT--T----------ATTTTTAGCTCATGCCTGAAACTC---TTAGACTAAGTTCTAAGT-AGCATTTCTCTTTAAAGTAGGGAATGTAAAG s rn3.chr10 24758967 91 - 110733352 TGATTGATTGATTGATTGGTTTTTAGCTCATGCCCAAAACTC---TTAGGCTAAATTCTAAGT-GATATTTCTCTTTAAGGTGGGGAATATAAAG s canFam1.chr9 16604747 78 + 53642819 TAGCTCAT----------ATTTTCAGT-----CTTGAAAATGTCACAAGGCTAAATACTAATT--ATGTTTCTTTTTAAGGTAGGCAGTATAAAA a score=546.0 s hg17.chr17_random 881707 1 + 2618010 A s panTro1.chr19_random 41894517 1 + 57627672 A s mm5.chr11 24739831 1 - 121648857 A s rn3.chr10 24759058 1 - 110733352 A a score=842.0 s hg17.chr17_random 881708 10 + 2618010 AATTGGTCTg s panTro1.chr19_random 41894518 10 + 57627672 AATTGGTCTg s rn3.chr10 24759059 10 - 110733352 ATTTTTTGTA a score=26929.0 s hg17.chr17_random 881718 295 + 2618010 gccaggcgcagtggcttacgcctgtaatcctagcattttgggaggctgaggcgggtggatcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccccgtctttactaaaaatacaaaattagctgggcacggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcggtgagccgagatcgtgccattgcactccagcctgggcaacaagagcaaaaaa-ctctgccaaaaaaaa-gaaaaa s panTro1.chr19_random 41894528 297 + 57627672 gccaggcgcagtggcttacgcctgtaatcctagcattttgggaggctgaggcgggtggatcacctgaggtcgggagtttgagaccagcctgaccaacatggagaaaccccgtctttactaaaaatacaaaattagctgggcacagtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaacctgggaggcagaggttgcggtgagccgagatcgtgccgttgcactccagcctgggcaacaacagcaaaaaaactctgccaaaaaaaaagaaaaa a score=25471.0 s hg17.chr17_random 882013 147 + 2618010 GAGTAGTATGGGAGAAGTCATACCTATTGGG---------------TAACACTATGGTTCCATTGTTTATGTCAAGGAAAATTCTGGACATATT------TTATTGTCAGGGTCTG-TTTTGTGAATACTTTAATTCTCTTGACTTAGCCTATCCCTACTT----CAGTTTAT s panTro1.chr19_random 41894825 147 + 57627672 GAGTAGTATGGGAGAAATCATACCTATTGGG---------------TAACACTATGGTTCCATTGTTTATGTCAAGGAAAATTCTGGACATACT------TTATTGTCAGGGTCTG-TTTTATGAATACTTTAATTCTCTTGACTTAGCCTATCCCTACTT----CAGTTTAT s canFam1.chr9 16604886 172 + 53642819 GAATACTATAGGA-AAACCATGCCTGTTGGGGCAGTATGCACAGGAGAACGTTATGATTCTGTTGTTTGTTTCAAAGAAAATTCTAAACATATTCTTTTATTGTTGTCATTGTCTGCTTTTATATATATTGTATTTCTCTCGAATTAACCTATCCTTATTTTGGCTAGTTTAT a score=23571.0 s hg17.chr17_random 882160 43 + 2618010 ATATATAAATTTTGTATCTAAAGAACTAGAGTTATAATCCTAC s panTro1.chr19_random 41894972 43 + 57627672 ATATATAAATTTTGTATCTAAAGAACTAGAGTTATAATCCTAC s mm5.chr11 24740894 43 - 121648857 GTTTATACATTTTGCATCCAAAGAACTGGAGTTATAGTCCTGT s rn3.chr10 24759791 42 - 110733352 GTTTATAAATTTTGCATC-AAAGAGCTGGAGTTATAGTTCTGC s canFam1.chr9 16605058 42 + 53642819 ATGAACAAATTTTGCCTCCAAAGGACTAGACTTCTAGT-CTAC a score=91.0 s hg17.chr17_random 882203 1 + 2618010 T s canFam1.chr9 16605100 1 + 53642819 T a score=273.0 s hg17.chr17_random 882203 1 + 2618010 T s panTro1.chr19_random 41895015 1 + 57627672 T s mm5.chr11 24740937 1 - 121648857 T a score=17281.0 s hg17.chr17_random 882204 157 + 2618010 TCAACATATTTAA----------------------------------------------TTAGGCTCCCATATAA-TTGTAATT----CATTACAAT--TAG-TGCAAGAAATCTAATGTTCT-TCA--CCTCCATGTCTTCCTCATCACTCCTCTGCAACTACCCCAAAAATAAACAGAACCATAGTGGCTTCTTTCCCAGCAGAACAAAGCC s panTro1.chr19_random 41895016 159 + 57627672 TCAACATATTTAA----------------------------------------------TTAGGCTCCCATATAAATTGTAATT----CATTACAAT--TAG-TGCAAGAAATCTAATGTTCTCTCA--CCTCCATGTCTTCCTCATCACTCCTCTGCAACTACCCCAAAAATAAACAGAACCATAGTGGCTTCTTTCCCAGCAGAACAAAGCC s mm5.chr11 24741176 162 - 121648857 TTAATATATATAAGTGTGTGTGTGTGTGTGCGCGCGCGTGTGTATGTGAGTGTATGTGCGTGTGTGTGTATGTGA-GTGTATAT----AGTTATAATACTAG-TGGAACAAATCAAATCTGTT-------------------------------------------TAAGAATAAATAGAATGTTCGCAGCTTGACTTTGATTTGATCAAA--- s canFam1.chr9 16605101 149 + 53642819 -TGACATATTTAA----------------------------------------------CTGGGGTCCTATGTAA-TTATAAGTAGGCCATTACAGT--TAATTGCAAGAAATCAAATGTTTT-TCATCTCTCCATTCCTCCCTCTCCAATTCCC--------------AAATAAAAAGATCTGTAGTGATTTGCCTCCCAGCAACGCTGAGCC a score=43652.0 s hg17.chr17_random 882361 154 + 2618010 AGGACTGGAACCCAAGCTCTAAGGGATGACAGGA--------------ATCATGT--TCTATTCAACTTTATTATTATTAGTTACTACA-TTTTTTTGAGGACCATCGTTATAC-ATTATGAGTGAG-TTAAAGGCAGAAAA-----ATGTAAGTTAGAAGGGTTTTCCTA-GAAAGCG s panTro1.chr19_random 41895175 156 + 57627672 AGGACTGGAACCCAGGCTCTAAGGGATGACAGGA--------------ATCATGT--TCTATTCAACTTTATTATTATTAGTTACTACA-TTTTTTTGAGGACCATCGTTATAC-ATTATGAGTGAGGTTAAAGGCAGAAAA-----ATGTAAGTTAGAAGGGTTTTCCTAAGAAAGCG s mm5.chr11 24741338 160 - 121648857 AGAG--AGAATCTAGGCTATGAACAATAACAGGGAGTTAAAAGATTACATATTGT--TTTATTTAAGTTTGTTATTCTTTTTT----TT-TTTTTTTGAGG---ATTGGCATACTTTTATGAGTAAG-TTAAAAGAAGAATA-----TCATGAGTTAGAAGGGTTTTCCTA-GAAAGCT s rn3.chr10 24760284 120 - 110733352 AAAAAGAGGACCTAGGCTGTAA-TAATAGCAGGG--------------A------------------------ATTAAGAGGATATGTA-TTATTTTGAGG---ATTATCATACTTTTATGAGTTAG-TTAAAAGAAG--------------AGTTAGAAGGGTTTTCCTA-GAAAGCT s canFam1.chr9 16605250 151 + 53642819 ------------AAGACCCTTAGAAATGGTGGGG--------------ATCATGTTGTATATTCTACTTTATTAGTGTTAGTCACTACAGTGTTTTTAAGAATCATCATAGTACATTTATGAGTGAG-CTAAAGGCAGAAAAGTATCTTATGAGTTAGGAGGGTTTTCCTA-GAAAGCT a score=22576.0 s hg17.chr17_random 882515 31 + 2618010 TTTTATGTAATTCAGTAT-TACAGGC-TATCTG s panTro1.chr19_random 41895331 33 + 57627672 TTTTATGTAATTCAGTATGTACATTCATATCTG s mm5.chr11 24741498 31 - 121648857 TTTTATGTAATTCAGTGT-TACAGGC-TGTCTG s rn3.chr10 24760404 31 - 110733352 TTTTATGTAATTCAGTAT-TACAGGC-TGTCTG s canFam1.chr9 16605401 31 + 53642819 TTTTATGTAATTCAGTAT-TACAGGC-TGTCTG s danRer1.chr11 6202273 27 + 27258617 TTTAGCCTGATGAAATAT-T----GA-TCTCTG a score=12092.0 s hg17.chr17_random 882546 10 + 2618010 CTTCCTGTCA s panTro1.chr19_random 41895364 10 + 57627672 CTTCCTGTCA s mm5.chr11 24741529 10 - 121648857 CTTCCTGTCA s rn3.chr10 24760435 10 - 110733352 CTTCCTGTCA s canFam1.chr9 16605432 10 + 53642819 CTTCCTGTCA s fr1.chrUn 199216300 10 - 349519338 ATTCATGGCA s danRer1.chr11 6202300 10 + 27258617 AGTCCTGTTT a score=5436.0 s hg17.chr17_random 882556 4 + 2618010 TAAC s panTro1.chr19_random 41895374 4 + 57627672 TAAC s mm5.chr11 24741539 4 - 121648857 TAAC s rn3.chr10 24760445 4 - 110733352 TAAC s canFam1.chr9 16605442 4 + 53642819 TAAC s galGal2.chrUn 27914454 4 - 165033910 TCAC s fr1.chrUn 199216315 4 - 349519338 CTAC s danRer1.chr11 6202310 4 + 27258617 CAAt a score=13805.0 s hg17.chr17_random 882560 20 + 2618010 CCTGAATCACAC-------TGTCT-GC--C s panTro1.chr19_random 41895378 21 + 57627672 CCTGAATCACAC-------TGTCTTGC--C s mm5.chr11 24741543 20 - 121648857 CCTGAATCACAC-------TGTCT-GC--C s rn3.chr10 24760449 20 - 110733352 CCTGAATCACAC-------TGTCT-GC--C s canFam1.chr9 16605446 20 + 53642819 CCTGAATCACAC-------TGTCT-GC--C s galGal2.chrUn 27914458 22 - 165033910 TGTTAATTATCC-------TCTCC-ATCAC s fr1.chrUn 199216319 27 - 349519338 ATGGAATCTCATTCTGTTGTGTGT-TC--C a score=221214.0 s hg17.chr17_random 882580 109 + 2618010 AGGTCAGTGTGGGCCATCC-ATCTGAGGTTGATGAGATATGTGATGCTATATCATATAGCAAAGGTGCATCTGTCATCCGAATGCTGCATGACTACATTGGGGATAAGGT s panTro1.chr19_random 41895399 110 + 57627672 AGGTCAGTGTGGGCCATCCCATCTGAGGTTGATGAGATATTTGATGCTATATCATATAGCAAAGGTGCATCTGTCATCCGAATGCTGCATGACTACATTGGGGATAAGGT s mm5.chr11 24741563 109 - 121648857 AGGTCAGTGTGGGCCATCC-GTCTGAGGTTGATGAGATATTTGATGCTATATCATATAGCAAAGGTGCATCTGTAATCCGAATGCTACATGACTACATTGGTGATAAGGT s rn3.chr10 24760469 109 - 110733352 AGGTCAGTGTGGGCCATCC-ATCTGAGGTTGATGAGATATTTGATGCTATATCATACAGCAAAGGTGCATCTGTAATCCGAATGCTACATGACTACATTGGCGATAAGGT s canFam1.chr9 16605466 109 + 53642819 AGGTCAGTGTGGGCCATCC-TTCTGAAGTTGATGAGATATTTGATGCTATATCATATAGCAAAGGTGCATCTGTCATCCGAATGCTCCATGACTACATTGGGGACAAGGT s galGal2.chrUn 27914480 109 - 165033910 AGGTTAGTGTTGGCCATCC-ATCCGAAGTAGATGAAATATTTGATGCTATTTCTTACAGCAAGGGAGCATCTGTAATCCGAATGCTGCACGACTACATTGGTGATGAGGT s fr1.chrUn 199216346 109 - 349519338 AGGTGAATGTGGGTCATCC-ATCAGAGGTTGATGAAATCTTTGACGCCATCTCGTACAGCAAAGGAGCATCTGTGATCCGCATGTTGCACAACTACATAGGAGATGAGGT s danRer1.chr11 6202362 109 + 27258617 AGGTTGATGTCGGACACCC-TTCGGAAGTGGATGAAATATTCGATGCCATATCATACAGCAAAGGGGCCTCTGTGATTCGCATGCTGCATAACTACATTGGCGATGAGGT a score=1894.0 s hg17.chr17_random 882689 4 + 2618010 -AAAA s panTro1.chr19_random 41895509 4 + 57627672 -AAAA s mm5.chr11 24741672 4 - 121648857 -AAAT s rn3.chr10 24760578 4 - 110733352 -AAAT s canFam1.chr9 16605575 4 + 53642819 -AAAA s galGal2.chrUn 27914589 4 - 165033910 -AAAA s danRer1.chr11 6202471 4 + 27258617 GAGA- a score=10322.0 s hg17.chr17_random 882693 42 + 2618010 A------------AAAAAAAC---TTTAAGTA--TTT---CATTCTTTCATGGTGAAATCAT s panTro1.chr19_random 41895513 45 + 57627672 A------------AAAAAAACAACTTTAAATA--TTT---CATTCTTTTATGGTGAAATCAT s mm5.chr11 24741676 39 - 121648857 A------------ATAAAAAT------AATAA--TTC---CAATCCTGCATTGTGAAATCAC s rn3.chr10 24760582 42 - 110733352 A------------ATAAAAAT---CATAATAA--TTC---CAATCCTGTATTGTGAAATCAC s canFam1.chr9 16605579 44 + 53642819 A------------AAGCAATT---TTAAAAAATCTTT---CATTCTTTTATGGTAAAATCGT s galGal2.chrUn 27914593 57 - 165033910 AGTCTGTTGTCAGGAGCTAAC---TGTAGGTT--TTCAGATATTTCTACACTACAAAAACCT a score=0.0 s hg17.chr17_random 882735 1 + 2618010 A a score=726.0 s hg17.chr17_random 882735 2 + 2618010 AA s panTro1.chr19_random 41895558 2 + 57627672 AA s mm5.chr11 24741715 2 - 121648857 AG s galGal2.chrUn 27914650 2 - 165033910 AA a score=0.0 s hg17.chr17_random 882735 1 + 2618010 A a score=67.0 s hg17.chr17_random 882736 2 + 2618010 AG s canFam1.chr9 16605623 2 + 53642819 GG s galGal2.chrUn 27914651 2 - 165033910 AA a score=100.0 s hg17.chr17_random 882737 1 + 2618010 G s panTro1.chr19_random 41895560 1 + 57627672 G a score=4609.0 s hg17.chr17_random 882738 70 + 2618010 AGTTTTGCATGAAAAAAAG--TCTCACTTTATTTGGATTA--AGTTCCCAAATAGTT-------------------------------TCTGGCTTGT---CATTTTT s panTro1.chr19_random 41895561 70 + 57627672 AGTTTTGCATGAAAAAAAG--TCTCACTTTATTTGGATTA--AGTTCCCAAATAGTT-------------------------------TCTGGCTTGT---CATTTTT s rn3.chr10 24760624 54 - 110733352 AGTTTT------AAAGAAG---------------GAATAA--AATTTTGATCTGATT-------------------------------TTTTGTTTATTGACCTTTTT s canFam1.chr9 16605625 103 + 53642819 TGTTTTGCATGGAAAAATGTGTCTGCTTTTATTTAGATTG--AGTTCTTAAGTAATTTTTCTAGACTTTGGAAGGATATTAACTCCGATCTGGGTTAT---CTTCTTT s galGal2.chrUn 27914653 48 - 165033910 --------------------------GTTTCTGTACATTATTTATTTCCAAGACTTT-------------------------------TCTTCTGTGT---GGTTTTT a score=0.0 s hg17.chr17_random 882808 14 + 2618010 TTTAATGACCAAAA a score=546.0 s hg17.chr17_random 882808 1 + 2618010 T s panTro1.chr19_random 41895631 1 + 57627672 T s rn3.chr10 24760678 1 - 110733352 T s canFam1.chr9 16605728 1 + 53642819 T a score=86.0 s hg17.chr17_random 882809 13 + 2618010 TT-AATGACCAAAA s panTro1.chr19_random 41895632 14 + 57627672 TTTGATGACCAAAA s rn3.chr10 24760872 9 - 110733352 CT-ATTGACC---- a score=10281.0 s hg17.chr17_random 882822 81 + 2618010 AGAATGAGAATTCAATTATTTGAAGTTGACTACTGTGGTCTCTTAGATGAGTGATGTGCAGGTGTGTTTG---------GGAGTGGAAAT s panTro1.chr19_random 41895646 81 + 57627672 AGAATGAGAATTCAATTATTTGAAGTTGACTACTGTGGTCTCTTAGATGAGTGATGTCCAGGTGTGTTTG---------GGAGTGGAAAT s rn3.chr10 24760881 74 - 110733352 ----------------TTTTTTATATTGCTTATTAAGGGTTCCTAGAAGAATGATACACAAGTTAGTATGCATGTGGTAAGAGTGGGAAT s canFam1.chr9 16605729 57 + 53642819 ----------------CTTTTTATATTGACTCTT---GTCTCTTAGATGAATGATGTGAAAATGTGTTTG--------------GGGGAT s galGal2.chrUn 27914701 59 - 165033910 GGGCTG----------TATTTGAACTTACCTG------------GGAGAAATAAGGCGGAGGGAAAATAC---------AGAAATGAAAT a score=11121.0 s hg17.chr17_random 882903 50 + 2618010 ----GGGAGGCTGTTATAAAACTTAAGAGCAAGAATAGAAGGCATAGAGTACGC s panTro1.chr19_random 41895727 50 + 57627672 ----GGGAGGCTGTTATAAAACTTAAGAGCAAGAATAGAAGGCATAGAGTACGC s canFam1.chr9 16605790 50 + 53642819 ----GGGCGGCTGGCATAAAACTTGAAAGCAAAAGTAGAAGGCAAAGAGTATGC s galGal2.chrUn 27914760 54 - 165033910 TATTTCAGTGCTGAAATCTGGCTTAAGGAAAAACACAGAAGAGTCAATCTTTGT a score=-31.0 s hg17.chr17_random 882952 1 + 2618010 C s rn3.chr10 24761743 1 - 110733352 T a score=35227.0 s hg17.chr17_random 882953 64 + 2618010 ATTATTAAATAAAAGGCAGTAG---GCATCAGAAGGATATATGTGTTTCAG-----TGTATCTGATACTTGA s panTro1.chr19_random 41895777 64 + 57627672 ATTATTAAATAAAAGGCAGTAG---GCATCAGAAGGATATATGTGTTTCAG-----TGTATCTGATACTTGA s mm5.chr11 24742464 64 - 121648857 ACTCTTAGATAAAACTTAATGG---GCTTCAGAAGGATGCATGCTTTTCAG-----CATATCTGATATTTTA s rn3.chr10 24761744 64 - 110733352 ACTCTTAGGTAAAACTTAATGG---GCTTCAAAAGGATTCATGCTTTTCAG-----CATATCTGATATTTTA s canFam1.chr9 16605840 64 + 53642819 ATTCTTAAATAAAAGACAGTAG---ATGTTAAAAGGATAGATGTTTTTCAG-----TAAGTCTGACACTCAA s galGal2.chrUn 27914814 68 - 165033910 ----AGCAGCAGAGTTTAGGAGGGAGTTACAGGGGGACATGTGGATCCTAGGATTCTGTGGTTGATTCTTGA a score=5631.0 s hg17.chr17_random 883017 13 + 2618010 GT-ATTTGAGTAAA s panTro1.chr19_random 41895841 13 + 57627672 GT-ATTTGAGTAAA s mm5.chr11 24742528 13 - 121648857 GG-AATTGAGTACA s rn3.chr10 24761808 13 - 110733352 GT-AATTGAATACA s canFam1.chr9 16605904 14 + 53642819 CTAATTTGAGTAAA a score=29137.0 s hg17.chr17_random 883030 67 + 2618010 TTTGTTTTTGAT-TACTAATATACAAATATACTATAAA-------TTCTGAGATCTGACTTCCCTGGATTTTAAA s panTro1.chr19_random 41895854 67 + 57627672 TTTGTTTTTGAT-TACTAATATACAAATATACTATAAA-------TTCTGAGATCTGACTTCCCTGGATTTTAAA s mm5.chr11 24742541 62 - 121648857 TTTAGTTTTGAT----AAATGTGTGTATCTGCTATAAA-------TTCTGAGATCTGACTCACTTTTACTT--AA s rn3.chr10 24761821 62 - 110733352 TTTACTTTTGAT----TAATGTGTGTATCTGCTATAAA-------TTCTGAGATTTGACTCACTTTTATTT--AA s canFam1.chr9 16605918 67 + 53642819 TTAGTTTTCGAG-TACTAATATGCAAATACACTATAAA-------TTCCAAGGTCTTAATCTCCCGGATTTTAAA s danRer1.chr11 6204936 75 + 27258617 TTTAATACTGATCTACTTAAAGATTAATTTACGTTTAAGGTCGTCTTTTGAGTTTTGGTTCTGATTGTTTTTTCT a score=5001.0 s hg17.chr17_random 883097 3 + 2618010 AAT s panTro1.chr19_random 41895921 3 + 57627672 AAT s mm5.chr11 24742603 3 - 121648857 AAT s rn3.chr10 24761883 3 - 110733352 AAT s canFam1.chr9 16605985 3 + 53642819 AAT s galGal2.chrUn 27914945 3 - 165033910 AAT s danRer1.chr11 6205011 3 + 27258617 GAT a score=141126.0 s hg17.chr17_random 883100 78 + 2618010 ----------TGTGTTTTCTCAGGACTTTAAGAAAGGAATGAACATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCGCAGGTAA s panTro1.chr19_random 41895924 78 + 57627672 ----------TGTGTTTTCTCAGGACTTTAAGAAAGGAATGAACATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCACAGGTAA s mm5.chr11 24742606 78 - 121648857 ----------TGTATTTTTTTAGGACTTTAAGAAAGGAATGAATATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCACAGGTAA s rn3.chr10 24761886 78 - 110733352 ----------TGTATTTTTTTAGGACTTTAAGAAAGGAATGAATATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCACAGGTAA s canFam1.chr9 16605988 78 + 53642819 ----------TGTGTTTTCTCAGGACTTTAAGAAAGGAATGAACATGTATTTAACCAAGTTCCAACAAAAGAATGCTGCCACAGGTAA s galGal2.chrUn 27914948 78 - 165033910 ----------TGTGTGTTCCCAGGACTTTCGGAAAGGAATGAATTTATATTTAACAAAGTTCCTGCAGAAGAATGCAGCCACAGGTAA s fr1.chrUn 199216511 78 - 349519338 ----------TTTGTCTTTGCAGGACTTCAGGAAAGGAATGAATGCATATCTTCTAAAGTTCCAGCATAAAAATGCTTCAACAGGTGA s danRer1.chr11 6205014 88 + 27258617 TGAGTAATCTTTTCTTTTTCTAGGATTTTAGAAAGGGAATGAATGCTTACCTTTTGAAGTTTCAGCACAAAAATGCATCTACTGGTAA a score=642.0 s hg17.chr17_random 883178 6 + 2618010 TCTTTA------ s panTro1.chr19_random 41896002 6 + 57627672 TCTTTA------ s mm5.chr11 24742684 6 - 121648857 TCTTTA------ s rn3.chr10 24761964 6 - 110733352 TCTTTG------ s canFam1.chr9 16606066 6 + 53642819 TCTTTA------ s galGal2.chrUn 27915026 6 - 165033910 CTGATG------ s danRer1.chr11 6205102 10 + 27258617 --GTTGACGTCA a score=1000.0 s hg17.chr17_random 883184 2 + 2618010 AT s panTro1.chr19_random 41896008 2 + 57627672 AT s canFam1.chr9 16606072 2 + 53642819 AT s galGal2.chrUn 27915032 2 - 165033910 AT s danRer1.chr11 6205112 2 + 27258617 CT a score=91.0 s hg17.chr17_random 883184 1 + 2618010 A s rn3.chr10 24761970 1 - 110733352 A a score=9119.0 s hg17.chr17_random 883186 91 + 2618010 AGCTTGAGATAG------------------------AAATGGAGAGAAAGTATTGTCACTCTATC----CAGGCTGGGACATTTTATTTTTGTTCTGA------ATACTTAACTCAAGGTCAGGA s panTro1.chr19_random 41896010 91 + 57627672 AGCTTGAGATAG------------------------AAATGGAGAGAAAGTATTGTCACTCTATC----CAGGCTGGGACATTTTATTTTTGTTCTGA------ATATTTAACTCAAGGTCAGGA s canFam1.chr9 16606074 76 + 53642819 AGCTTGAGATAG------------------------TA--GAAGAGAAGATGTTGGCACTCTATC----CAGAGCGGAACATTTACATT---TTCTAA------ATGCTTAATCT---------- s danRer1.chr11 6205114 125 + 27258617 ATCTTTGCATAGATTAAACTTTGACCCTCTAATAATAAATGACTAAACAGACTAATGACCATGGCAGCACAAATTAGAACTTCTTGTAGTAGTTTTTAGGCCTGATGCTTATTTGCATGTCAACa a score=6304.0 s hg17.chr17_random 883277 39 + 2618010 TCCATGTAAT-------AAATAAATTAGCCTTATTTGAAGCTGTGT s panTro1.chr19_random 41896101 39 + 57627672 TCCATGTAAT-------AAATAAATTAGCCTTATTTGAAGCTGTGT s canFam1.chr9 16606150 46 + 53642819 TCCGTGTGATAGATAGGAAGTAAAGTTGACCTATTTGGTGCCATGT a score=42643.0 s hg17.chr17_random 883316 483 + 2618010 Tcaggttgaatatctct--------aatctgaaatttgaaatgctccagaatctgaaactttttcttttctttctttctttttttttaattaaagttctagggtgcatgtgcacaatgtgcaggtttgttacatcagtatacatgtgccatgttggtttgctgcacccattaactcgtcatttacattaggtatttctcctaatgctatccctcccccagccccctaccccatgacaggccctggtgtctgatgttccccgccctgtgttcaagtgttctcattgttcaattcccacccaaaatctgaaactttttgagtgccaacgtgatgctcaaaggaaatgctcattggaacattttagattttggatattgcaattatagatgctcagctagtaagtataatgcaaatattccaaaatccaaaagaaatatgaaattcaaaacatttctggtcccaagcattttggataagggacactcaacctgC s panTro1.chr19_random 41896140 488 + 57627672 Tcacgttgaatatctctaatctgaaaatctgaaatttgaaatgctccagaatctgaaactttttctttcctttctttc-ttttttttaattaaagttctagggtgcatgtgcacaatgtgcaggtttgttacatcagtatacatgtgccatgttggtttgctgcacccattaactcatcatttacattaggtatttctcctaatgctatccctcccccagccccctaccccatgacaggccctggtgtgtgatgttccccgccctgtgttcaagtgttctcattgttcaattcccacccaaaatctgaaac--tttgagtgccaacatgatgctcaaaggaaatgctcattggaacattttagattttggatattccaattatagatgctcagctagtaagtataatgcaaatattccaaaatccaaaagaaatatgaaattcaaaacatttctggtcccaagcattttggataagggatactcaacctgC a score=18880.0 s hg17.chr17_random 883799 102 + 2618010 AGTAAGTCATAGGGTCAACATGAATCAGGACTCATTATCCCTTTGGTCATCCTCCAGCATTCTGCTTTCCATAACTGAATATTTTGCCAACTTAAAGAGTCT s panTro1.chr19_random 41896628 102 + 57627672 AGTAAGTCATAGGGTCAACATGAATCAGGACTCATTATCCCTTTGGTCATCCTCCAGCATTCTGCTTTCCATAACTGAATATTTTGCCAACTTAAAGAGTCT s canFam1.chr9 16606196 96 + 53642819 GTTAAGCCATGG----ATCATGAATCAGAACCCATTATCCTTCTGGTCCCCCTCCAGTAGTCTGCTTTCCAAAGCTCAGTGTCCTGTCACC--AGAGAGTCT a score=72076.0 s hg17.chr17_random 883901 794 + 2618010 GggccgggtgtggtggctcacgcctgtaatcctagcactttgggaggccaggatgtgaggactgattgagcccaggagttcaagaccagcttgcaacatagcgagaccccacctctacaaaaaatacaaaaatattagccgggtgtggtggtatgtgcctgtagtcccagctactcaggaggctgaagtgggaagggtcacttgagcccaggagtttgaggttacagtgagcaatcgtggcaccactgcactccagcctgggcaacagaacaagatcctgtctctgaaaaaataaaaaaTCAAGGGAAT--agtcatgtgttgcttaacaacagggatatgttctgagaaatatgttgtcaggcaatttcatcaatatgtgaacatcatagaatgtacttacagaaacctacacagtatgtcctaggctatatacacctagcctacatggtatataccctgttgctcctaggctacaaaatacctgtacagcatgttactgtactgaataccataggcaattataacacaatagtatttgtatacctgaacatttctcaatatagaaaagttacagtaaaaatatgatattaaagatGCTCCATCAGCtggctgatatgcctataatccgagcactttgggaggctggggcaggtggactgcttgagtccaggagtttgataccagcctgggcaccatgccaatacctcgtctctataaaaagtacaaaaattagctgggtgtggtggcatgtgcctgtagtcccagctacttgggaggctgaggtaggaggatca s panTro1.chr19_random 41896730 795 + 57627672 Gggccgggtgtggtggctcacgcctgtaatcctagcactttgggaggccaggatgtgaggactgattgagccccggagttcaagaccagcttgcaacatagcgagaccccacctctacaaaaaatacagaaatattagccgggtgtggtggtatgtgcc-gtagtcccagctactcaggaggctgaagtgggaagggtcacttgagcccaggagtttgaggttacagtgagcaatcatggcaccactgcactccagcctgggcaacagaacaagatcctgtctctgaaaaaataaaaaataaaGGGAATAcagtcatgtgttgcttaacaacagggatatgttctgagaaatatgttgtcaggcaatttcatcaatatgtgaacatcatagaatgtacttacagaaacctacacagtatgtcctaggctatatacacctagcctacatggtatataccctgttgctcctaggctacaaaatacctgtacagcatgttactgtactgaataccataggcaattataacacaatggtatttgtatacctggacatttctaaatatagaaaaggtacagtaaaaatatgatattaaagatgctccaccagctggctgatatgcctatactcccagcactttgggaggctggggcaggtggactgcttgagtccaggagtttgagaccagcctgggcaccatgccaaaacctcgtttctataaaaagtacaaaaattagctgggtgtggtggcatgtgcctgtagtcccagctacttgggaggctgaggtaggaggatca a score=13185.0 s hg17.chr17_random 884695 196 + 2618010 tagtttcaaagtgtggcacttactggttctccactcactccctcctgccgtcttgtgaagaaggtgcctgcttccccttccccttctgccatgattgtaagtttccggaactgcaagtcaattaagcctg-tttcctttataaattacccaatctcaggtatttctttacatcagtgtgaaaacaaatgaatacaGT s panTro1.chr1 2486484 196 - 229575298 tggttttaaaatgtggagcttcctcattctccactcactccctcctgccgccttgtgaagaaggtgcctgcttccccttcgccttccgccatgattggaagtttcctgaactgcgagtcaatttagc-tgctttcctttataaataacctagtctctgatatttctttatagcagtgtgaaaacgaactaatgcaGA a score=25229.0 s hg17.chr17_random 884891 283 + 2618010 -CCCCTTCCCTGA-GGTGCCTTCTCCTTAGGCAACCAGCTGCCCCCATGCT-CCTCTTCTGC------------------CCCCCTGGTATTTCCTTTCCCCTCATGAGGCCCAAGTGATCCACATGGCCAGCCACAGCCCCATCCTACTGCAGGCCTGTGTGGCTGCTAGAGAGGCCAGGCTCCTTTCCGCACCCCGAGGCTGCCCGATATGCTTTCTGCATCCTGTAGAAAACTGACCCACTATTCTCATACTGGT-GCAACTTCTTCCATTACCTCAAAACTGGACAACGTGAAC------TTGTTTC s panTro1.chr1 2486680 270 - 229575298 -CCCCTTCTCTGA-AGTTCCTTCTGCTTAGGCCACCAGCTGCCCCCATGCTCCCTCCTTTG-------------------CCCCATGGTCTTACTTTCCCCCTCATTAGGCCCACGTGATCCACACGGCCAGCCCCAGCCCCGTCCTGCTGCAGACCTGT-----------------CAGGCTCCTTTCCTGACCCTGAAGCTGGCTGATATGCTCTCTGGATCCTGGAGGAGATTGACCC-CTACCCGCATCCTGGTGGCAACTTCTTCCAAGACTTCAAAGCTGGACAATGTGAGCA--GGTCTGTTTC s mm5.chr11 60889529 270 - 121648857 CCCCCTTCTGGAACGGTGCCTTAT--TTAGGCCTGTAGCTACATGTACCCT-CCTCCATTCCAGGACTAAGTGGCCTCCTTACCATAGGCTTTCTTTTCACCTCATTAGGCCCAAGTAATCCACACAGCCATCCCCAGGTCCGCCTCACTGATGACGTGG-------------------GATTCCTTTTCTAGCCCCAAGAC--ACTGCTATGCTTTCTG---------AGGTATTGGCCC--------CAGACTGATGACACCTTTCCCCAAGACCTTAAAGCTGGACACCTCTGGCGCTGGCCCATTCT a score=2319.0 s hg17.chr17_random 885174 15 + 2618010 TTGTCTCTTCTTGCT s panTro1.chr1 2488043 15 - 229575298 TTGTCTCTACTTGCT s mm5.chr11 60889799 15 - 121648857 GTTTCTCCACATGCT a score=0.0 s hg17.chr17_random 885189 33 + 2618010 AGGGCTGTCACTGGGACAGTCCGAGATGGGGGG a score=964.0 s hg17.chr17_random 885189 10 + 2618010 AGGGCTGTCA s panTro1.chr1 2488058 10 - 229575298 AGGGCTGTCA a score=1576.0 s hg17.chr17_random 885199 23 + 2618010 CTGGGACAGTCCGAGATGGGGGG s panTro1.chr19_random 41326529 22 + 57627672 TTGGGACAGTCCGAGAT-GGGGG a score=13327.0 s hg17.chr17_random 885222 118 + 2618010 GTGGGGGGAGACA-----atggatgaatggatggatgaatggaCAGTAGTCCAGGGAGATGTCCCTGTGTGTCCTGAACTGGGACCTTCCTCCAATGAGAAGCCTTCCTGAGTGAGTTTATAc s panTro1.chr19_random 41326551 116 + 57627672 GTGGGGGGAGACA-----atggatgaatggatggatgaatggaCAGTAGTCCAGGGAGATGTCCCTGTGTGTCCTGAACTGGGCCCTTCCTCCAATGAGAAGCCTTCCTGAGT--GTTTCTAc s mm5.chr11 60889814 110 - 121648857 TTGGAGGCAGACAAACCCAGGGATGGATGGATGCATGCATG----------CATGTATGCATGCTTGTGTCCCGGGA---GGGTGACTCCACCAAGCATCAGGTCCCCTGGGTGAGCTTAGAC a score=16242.0 s hg17.chr17_random 885340 176 + 2618010 agtcatcccttggtatccatggattagttctagggtccccggggatgccaaaatccatggatcctcaagtctctgacataacatggcctagtatttacatatcagctatgcacatcctcccgtagacattagaccatctctggattattcatgatgtgtaatacaatgcagatgct s panTro1.chr19_random 41326667 176 + 57627672 agtcatcccttggtatccatggattagttctagggtccccggggataccaaaatccatggatcctcaagtctctgacataacatggcctagtatttacatatcagctatgcacatcctcccgtagacattagaccatctctagattattcaggatgtgtaatacaatgcagatgct a score=5403.0 s hg17.chr17_random 886170 92 + 2618010 ctttaccaagaactgccaaattatcctctagagtggtgtcaactgacattcccatgagcaaagaatgaagaaatcccactttcagcatgttc s canFam1.chr9 37101839 87 - 53642819 CTTTACCAAGAATATCCCAATTATGCTCTAG-----TTTCAACTAACACTCCCATGAGCAAAGAATAAAGAAATCTCACTTTCATCATCCTC a score=1737.0 s hg17.chr17_random 886263 49 + 2618010 gaaaaactttagtatttttgacaatctaatgggtattaaatgatagtcc s canFam1.chr9 37102123 47 - 53642819 cAAAGACTTGAAGAGTTTTGACAGTT--ATAAGCATTAAATGGTATTTC a score=3767.0 s hg17.chr17_random 886651 133 + 2618010 attggtttaatcagaatttccctgattactaataacattggtta-----ctatgcatcttttctcgtgtgtgtgt----gtgtgtgtgcacgcgccattaagtttttccactgtgaactgcttgtttaacactcttGTGCAt s canFam1.chr9 37102384 140 - 53642819 gttgctttaattagaatttccctgattactagtaacactagttaagcatctttCTCTTCTTTTTCATTTTTCTTTCCTTTTTTTTTTTTATAGGTCATT--GCTTTTCCTCTGCAAATTGTTCATTCATAACCCTTGCCTAT a score=8013.0 s hg17.chr17_random 886998 100 + 2618010 aggctggt-ctcaaactcctgacctcgtgattcgcccgtctcagcctcccaaagtgctgagattacagacgtcagccaccacgcctggccTCTTGTGCATT s panTro1.chr19 62202630 101 + 82489036 aggctggtgctcaaagtcttggattcgtgattcgcccgtctcagcctcccaaagtgctgagattacagacgtgagccaccacgcccggcCTCTTGTGCATT a score=16579.0 s hg17.chr17_random 887098 104 + 2618010 TTTCAATTTAGTCATAACCTTGCTTA-----AAACAAAACTTGTTTTGTT---TTAAACAAAACTTCAAATTCATTTCCAGA-----CATTTGAATGTTCTAAATCTAAAATAACAA s panTro1.chr19 62202731 105 + 82489036 TTTCAATTTAGTCATAACCTTGCTTATATGCA-------TTTATTTTGTTGTTTTAAACAAAACTTCAAATTCATTTCCAGA-----CATTTGAATGTTCTAAATCTAAAATAACAA s canFam1.chr9 37102525 105 - 53642819 TTTCAATTTGGTTGTAAACTTGATTTTATATA------------CTTGTTGCATTAAACAGAACCTCAAATTCATTTTCAGATCATTCATTTGAATGGCCTAAATTTAAAATAAAAA a score=29236.0 s hg17.chr17_random 887202 171 + 2618010 AAACACAGATGCCCTAAATCACAAAGAAATGCTTCCTG---------aggcaggtaagtgtagcaagccatgtggaagctgtgcacaaccccttaaaagaaggaggtggtagccatttcttggagccaaagaattatcgctatggtgactggcaggtttagtgctgacagatcttccaat s panTro1.chr19 62202836 171 + 82489036 AAACACAGATGCCCTAAATCACAAAGAAATGTTTCCTG---------aggcaggtaagtgtagcaagccatgtggaagctgtgcacaaccccttaaaagaaggagatggtagccatttcttggagccaaagaattatcgctatggtgactggcaggtttagtgctgacagatcttccaat s canFam1.chr9 37102870 171 - 53642819 AAGTACAGATGTCCTAAATCACAAACAAATGTCTACAGAAGACAGCCAAGCGGGTGAGTAGAGTAGGCCAGGTGAAGGCTACGCA--------TAATGGAAGGGGGCGGTAACCACTGCGTGGAGCCAACCCATTATTGCTATACTTAAAAGCTGACTTAGTATGGACAG-TCTTCCAAT a score=28656.0 s hg17.chr17_random 887373 323 + 2618010 tttttttttttttttttgagacggagttttgctcttgttgcccaggctggagtgcaatggcgtgatctcggctcaccgcaacctccgcctcccaggttcaagcgattttcctgcctcagcctccctagtagctgggattacaggcatgtgccaccacgcccggtaaattttgtatttctagtacagacggggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatctgaccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcacctggcctgatcttccaattttttttttaaa s panTro1.chr19 62203007 319 + 82489036 tttttttcttttttt--gagacggagtttcgctcttgttgcgcaggctggagtgcaatggcgtgatctcggctcaccgcaacctccgcctcccaggttcaagcgattttcctgcctcagtctccctagtagctgggattacaggcatgtgccaccacgcctggtaaattttgtatttctagtagagacggggtttctccatgttggtcaggctggtctcgaactcccgacctcaggtgatctgaccgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcacctggcctgatcttccaatttttttt--aaa a score=45268.0 s hg17.chr17_random 887696 296 + 2618010 a---gctacaaa-ttcagatttcatgtgcagtctctctattttttattaatggtaactaattc-aagttttcagaaacactgtatagaccaaacaaaaTCTGTGTGCAGATCAACAATGCTCTTAGACAACTGAACATACCACAAAACTAGGTAAGAACATCAGA-----GTAGTACGATATCTGCATGAAAGACCTGTAT--ACGGGTAATCA-TTTATTAATAACCAATACATATTTAAACATGATTAGCTGGCAACTAAAATTACCTG-CCTAAATGAGAGACAGTAAATTGCAAAGTCTATAATGA s panTro1.chr19 62203326 299 + 82489036 aaaagctacaaa-ttcagatttcatgtgcagtctctctattttttattaatggtaactaattc-aagttttcagaaacactgtatagaccaaacaaaatctgtgtgcAGATCAACAATGCTCTTAGACAACTGAACATACCACAAAACTAGGTAAGAACATCAGA-----GTAGTACGATATCTGCATGAAAGACCTGTAT--ATGGGTAATCA-TTTATTAATAACCAATACATATTTAAACATGATTAGCTGGCAACTAAAATTACCTG-CCTAAATGAGAGACAGTAAATTACAAAGTCTATAATGA s canFam1.chr9 37103154 300 - 53642819 ---agtcacaaatttcttatttcatttgcaattttccaaattgtaattgatggtaactaatacaaaatttgcaatatcactg--cagtccgaataaaacccaCATGTAGGTCAATAGTGCCTCAAGATCACT-AAGAGAACAGAGAACTAGGTAAGGAGATAGGACTAATTTAATTTAATATCTATATGAAAAAGCTATACCAAAGAGTAATCATTTTATTAATAATCAACAAA----TAAACATGATTAATCTCAAACTAAAATTACCCGACCTAAATTATAGACAGTATGTTAGTAAACCTGTAACTG a score=0.0 s hg17.chr17_random 887992 5 + 2618010 GCTAT a score=200.0 s hg17.chr17_random 887992 2 + 2618010 GC s panTro1.chr19 62203625 2 + 82489036 GC a score=575.0 s hg17.chr17_random 887994 3 + 2618010 TAT s panTro1.chr19 62203627 3 + 82489036 TAT s mm5.chr11 96941468 3 + 121648857 TGT a score=7398.0 s hg17.chr17_random 887997 20 + 2618010 TCAAAATCTGTAACACATAA s panTro1.chr19 62203630 20 + 82489036 TCAAAATCTGTAACACATAA s mm5.chr11 96941471 20 + 121648857 TCAAGATCCAAAACACACAC s canFam1.chr9 37103454 20 - 53642819 TCAAAATCACTAACACATAA a score=-192.0 s hg17.chr17_random 888017 15 + 2618010 AGTGAAAC---------TACTTTG s panTro1.chr19 62203650 15 + 82489036 AGTGAAAC---------TACTTTG s mm5.chr11 96941491 24 + 121648857 ACACACACACACACACACACACTT a score=1035.0 s hg17.chr17_random 888032 19 + 2618010 GCTTACAAAA---AAAATGCTT s panTro1.chr19 62203665 19 + 82489036 GCTCACAAAA---AAAATGCTT s mm5.chr11 96941515 16 + 121648857 ACTTTTTAAA---AAA---CTT s canFam1.chr9 37103993 19 - 53642819 --tTTTAAAACTTAAAAAGTT- a score=20815.0 s hg17.chr17_random 888051 50 + 2618010 CTCATAAGTCTTCATGTTTCAAAACAAAGA-CGTCATTTAATGAATGGCTT----------- s panTro1.chr19 62203684 50 + 82489036 CTCATAAATCTTCATGTTTCAAAACAAAGA-TGTCATTTAATGAATGGCTT----------- s mm5.chr11 96941531 44 + 121648857 CTTACAAATCTTCCTGTTTCAAAACAAAAA-TGTCATCTAA------GTTA----------- s rn3.chr10 86015164 45 + 110733352 CTTATAAATCTTCCTATTTCAAAACAAAAACTGCCACCTAA------TTTA----------- s canFam1.chr9 37104012 61 - 53642819 TTCATAAATCCTTCTGTTTCTAAACAAAAA-TGTCATTTAAAAAAATGTCATTTAATGAACt a score=31580.0 s hg17.chr17_random 888101 105 + 2618010 A--TCTTTT---AAGCAGCAATATT-------CCTT--CACAC----TATTTCACCA-AAACATACCTAAATAGCACTAAAACCTTTGTG-TCCAACTGGCGATTTATA-----------GC---------------------ACTAAAGTTGAACA s panTro1.chr19 62203734 105 + 82489036 A--TCTTTT---AAGCAGCAATATT-------CCTT--CACAC----TATTTCACCA-AAACATACCTAAATAGCACTAAAACCTTTGTG-TCCAACTGGCGATTTATA-----------GC---------------------ACTAAAGTTGAACA s mm5.chr11 96941575 136 + 121648857 A--TTTTTTTAAAAGTGGCAATATTAATGGAATTCC--CATTG----TATTTTATCG-GAACATACCAATCAGTTCCCAAAACCTTTATG-CCCAACTGGTTATGGACA-----------ATAAACCTTTTGCCTACTCACAAACTCAATTTAAAAA s rn3.chr10 86015209 132 + 110733352 ACTTCTTTTTAAAAATGGCAATATT-------CCTTCCCATTG----TATTTTATCA-GAACAT-CCAACCAGTTCCTAAAACCTTTACA-CCCAACTGGTCATGGACAATAAACCTTTTGC-----------CTACTCATAAACTCAATTTAAAAA s canFam1.chr9 37104256 111 - 53642819 a--tTTGTT---AAGTGGTAATAAT-------CCTT--CACACTGTTTATTTCACCAGGAACATTCTTAAACAGCACTAAAACTTTTCTGTCCCAATTGGATGTTTATA-----------GC---------------------ATTACATTTCAACA a score=-999.0 s hg17.chr17_random 888206 4 + 2618010 AAAA-- s panTro1.chr19 62203839 4 + 82489036 AAAA-- s mm5.chr11 96941711 4 + 121648857 GGAG-- s rn3.chr10 86015583 3 + 110733352 -AAA-- s canFam1.chr9 37104367 4 - 53642819 --AACA a score=5254.0 s hg17.chr17_random 888210 17 + 2618010 AACAA--AAAGAATTCTTT s panTro1.chr19 62203843 17 + 82489036 AACAA--AAAGAATTCTTT s mm5.chr11 96941941 19 + 121648857 AACAAATAAGGAATGGAAT s rn3.chr10 86015587 17 + 110733352 AACAA--AAGCAATTTTTT s canFam1.chr9 37104371 14 - 53642819 ---AA--AAAGATCCCTTT a score=5891.0 s hg17.chr17_random 888227 36 + 2618010 GCCTATTCAGAAGTTGACTT---AAAAATTCAGAAACAT s panTro1.chr19 62203860 36 + 82489036 GCCTACTCAGAAGTTGACTT---AAAAATTCAGAAACAT s mm5.chr11 96941960 30 + 121648857 GTTTTTTTACAAAATG---------AAATACAGAAGAAA s canFam1.chr9 37104385 39 - 53642819 GTCTATTTATAAATTCACTTTTAGAAAATTCAACAACAA a score=300.0 s hg17.chr17_random 888263 1 + 2618010 g s panTro1.chr19 62203896 1 + 82489036 g s mm5.chr11 96941990 1 + 121648857 G a score=27513.0 s hg17.chr17_random 888264 312 + 2618010 gctgggcacggcagctcatgcctgtaatcccagaactttgggaggccaaggtgggtggatcacgaggtcaggggttcgagaccagcctggctaacatggtgaaaccccatctctactaaaaatacaaagattagctgggcgtggtggcaggcacctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgaaatcgcgccattgcactccaacct-gggcgacaaaagcaagactccatctt-aaaaaaaaaaaaaatcagaaacacaaag-aaaT s panTro1.chr19 62203897 315 + 82489036 gctaggcacggcagctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacgaggtcaggggttcgagaccagcctggctaacatggtgaaaccccatctctactaaaaatacaaagattagctgggcgtggtggcaggcacctgtaatcccagctactcgggaggctgaggcaagagaatcgcttggacccaggagggggaggttgcagtgagccgaaatcacgccactgcactccaacctggggcgacaaaagcaagactccatcttaaaaaaaaaaaaaaaTCAGAAACACAAAGAAAAT a score=91.0 s hg17.chr17_random 888575 1 + 2618010 T s canFam1.chr9 37104431 1 - 53642819 T a score=3378.0 s hg17.chr17_random 888576 10 + 2618010 GAAGCACTT-A s panTro1.chr19 62204212 10 + 82489036 GAAGCACTT-A s mm5.chr11 96941991 11 + 121648857 AAAGCACGTAA s canFam1.chr9 37104432 10 - 53642819 GAAGCACTT-A a score=259662.0 s hg17.chr17_random 888586 606 + 2618010 CTGG-GGTATG--------------CTCCAATGGGTAAAATGAATAAAAACCTTTCTG-AGTTTGAAGTTTATGCCAGCAAAATAAT-AACTGT-GGTTTAG-TTACTGGTCTTAAT-CATTACCTAGGCAACCACACTTTCATCCATCAACATCTACAGTGAA-TTTCACAGTAGCCAAGCAGTTAATCCACCAATGTCAAGATACCTGTACAACATTATACATGCCAAATCACA--CAGCACATTACTACTGCAACCATTTGAGAG------AAAGTATTTGTGCATTTTGGAAAGGCACCATGCACAACATCCAATTTCAAGTA--CCTTCCAACTCCTCCTGTGTTTAGGGGAAACTCATCTATTTATACTAATGAATTAAGCTGTTTCT---TGAATTGCTACTAATTTTTTTTTTCCAGGATACTACCA-TTTCTGGAAGGGTGGGAGGGAGGAACCAAAGGAACAAAGGTACTTATCTTAAAAATAGAAATCCATTCACATTTTAAAA-ATTGGTCAGCA--TCTTGTCTTATATTAGAGATGCACTTATTTAAAAAGTTGACCAATaatgggataatctatgtaaagtctctgttttagcacttagtgcctcatatgtagtcatcacttaatagat s panTro1.chr19 62204222 611 + 82489036 CTGG-GGTATG--------------CTCCAATGGGTAAAATGAATAAAAACCTTTCTGAAGTTTGAAGTTTATGCCAGCAAAATAATAAACTGTGGGTTTAGTTTACTGGTCTTAATACATTACCTAGGCAACCACACTTTCATCCATCAACATCTACAGTGAA-TTTCACAGTAGCCAAGCAGTTAATCCACCAATGTCAAGATACCTGTACAACATTATACATGCCAAATCACA--CAGCACATTACTACTGCAACCATTTGAGAG------AAAGTATTTGTGCATTTTGGAAAGGCACCATGCACAACATCCAATTTCAAGTA--CCTTCCAACTCCTCCTGTGTTTAAGGGAAACTCATCTATTTATACTAATGAATTAAGCTGTTTCT---GGAATTGCTACTAATTTTTTTTTTCCAGGATACTACCA-TTTCTGGAAGGGTGGGAGGGAGGAACCAAAGGAACAAAGGTACTTATCTTAAAAATAGAAATCCATTCACATTTTAAAA-ATTGGTCAGCA--TCTTGTCTTATATTAGAGATGCACTTATTTAAAAAGTTGACCAATaatgggataatctatgtaaagtctctgttttagcacttagtgcctcatatgtagtcatcacttaatagat s mm5.chr11 96942002 583 + 121648857 CTGGAGATTTG--------------CTCCAAAGAG--ATATGAGTA-----TTTTTCAAAGTATGAAACTTATGCCAACAAAACAAC------T-GGTTTAG-TTGCTGACCTTAAT-CCTCATCTAGGCAACCAT-TTGTCATCTATCAACACATACAGTCAATTTTCATGGCAGCCAAGCATTT-----ATCAATGTCAACATACCCGAACCACATTACATTTG-CAAATCACATTTAGCTAATTACTACCATAACCACCAAGGTG---CTTAAAATGTTT----ACTTTAGAAA-GCACTGTATACAACATCAAATTACCAGTATTTTTTTTCATTCCTCCTATGTTTAGGGAAAATACACCTGTTTATACTAATAAATCAAGCTATTTAT-ACTTAACAGCTTC----TTTCTCTTTTCAAGATACTGACA-TTTTTAGAAGAGT----AAAAGAAGTCAGAGGAACAAAAATATGTACCTCAAAAATAGACCTCCACTAAACCTTTTAAA---TAGTCAGTATTTTTTGCACCTTATTAGAACTGCAT---TTTAAAAGGCAACCAAACACGGGGATAATCTGTAGAAAGTGGCTGAGTTAGCATTTACTGCCTGGTAAGTAGTAATCACTTAAAAGAT s rn3.chr10 86015632 591 + 110733352 CTGG-AGACTG--------------CTCCAGAGAGAGAAATGACTA-----CTTTTCAAAGTTTGAAGC-TATGCCAATAGAACAAC------T-GGTTTAG-TTGCCAATCTTAATCCAACAAACAGGCGAATGT-TTGTTGTCCATCAACACATATAGTCTGTTTGCATGGCAGCCAAGCATCTGATTTATCAATGTCAACATGCCTGAACCACATTACATTTG-CAAATCACATTTAGCTAATTACTACTATAACCACCTTGAAGGTACTTAAAATGTTT----ACTTTGGAAA---GCTGTATACAACATCAAATTACCAGTA---TTTTTCATTCTTCCTATGTTTAGGGAAAACACACCTGTTTATGCTAACAAATCAAGCTATTTGTTACTTAACATCGTC----TTCCTCTTTTCAGGATACTGACACTTTTTGTAAGAGT----AAAAGAAGTCAGAGGAACAAAAATATGTACCTTAAAAATAGAACTCCATTAAACCTTTTAAATGTCAGTCAATATTTTTTATATCTTATTAGAAATGCAT---TTTAAAAGGCAACCAAACAC-AGGATAATCTATAGAAAGTGACTAAGTTAGCATTTACTGCCTGGTAAGTAGTAACCACTTAAAAGAT s canFam1.chr9 37104448 593 - 53642819 CTGG-GGTGGGGTGGAGGGAGGTGTCTCCAAAAAGTAAAATGAGTAAAAA-CCTTCCAGAGTTTGAAGTTTATGCCAACAGGATAAT----AGC-AGTTTAC-TTACACATTTTCGT-CTTTATCTAAGCAACCATATTTTTATCCATCAACATCTATAGTGAA-GTTAATGATAGCCAAGCAGTTAATCAGTCAATGTCGAGATACCTGTACAACACATTA--TGCCAAATGACATTTACCTCACTACTACTGTAGCATTCTGAGGG------AAAGTGTGTGTATACTTTGGAAAGGCACAGTCTACAACATCCACTTATAAGTA--CATTCTAATTCCTCCTGTGTTTAGGGAAAACCCACCTGTTTATACTACTGAATTAAGCTGCTTGT---TGAATAGCTACTAA-TTTTTTTTTTCAAGATACTGCCA-TTTCTGGAAGGGTGGGAGGGAAGAACCAAAGGAATAAAAATACTTACCTTAATAATAGAACGCTACTCAAATTTTTTAA-ATCTGACAGTATACTCTGCCTTATATTAGACATGCAT---TTTGAAC--------------AGGATA--------AACGTGCTTGCTTTAGCCCTTagtgcctgattcacagtaatcagttaatagat a score=4284.0 s hg17.chr17_random 889192 16 + 2618010 ------gttaAGACATACATAT s panTro1.chr19 62204833 16 + 82489036 ------gttaAGACATACACAT s rn3.chr10 86016260 16 + 110733352 ------ACACACACACACACAC s canFam1.chr9 37105041 22 - 53642819 gttgttattaAGACACACACAC a score=16218.0 s hg17.chr17_random 889208 91 + 2618010 ACACACACACAGGTTAA-------------------------ATTGTGCTCT-CATATCATCTAA----CAGCATTCACCTAACAGTTTATAAAGCTTCTGATCAG--AATGATATGAAGTTT s panTro1.chr19 62204849 61 + 82489036 ACACACACACAGGTTAA-------------------------ATTGTGCTCT-CATATCATCTAA----CAGCATTCACCTAACAGTTTA--------------------------------T s rn3.chr10 86016276 97 + 110733352 ACACACACACCAGATTA-------------------------ATTGCATTCT-CACATGATTTAAAAAGCAACATTTACCTAACAGTTTATAAAGTAACTAATCAGTATATGATTTAAAATTT s canFam1.chr9 37105167 116 - 53642819 ACATACACAGAAACTAAGATTAAACACGTTGTAATCATAAAGATGTTGCTCTGAATATCATCTAA----CAGCATTTATCTAACAATTTATAAAGT-GCTTATCAG--AATGATATAAAATTT a score=8403.0 s hg17.chr17_random 889268 30 + 2618010 TAAAGCTTCTGATCAG--AATGATATGAAGTT s panTro1.chr19 36840846 30 + 82489036 TAAAGCTTCTGATCAG--AATGATACGAAGTT s rn3.chr10 86016340 32 + 110733352 TAAAGTAACTAATCAGTATATGATTTAAAATT s canFam1.chr9 37105253 29 - 53642819 TAAAG-TGCTTATCAG--AATGATATAAAATT a score=58404.0 s hg17.chr17_random 889299 241 + 2618010 AAAAACTATGTATTGTATTATATGGCACTTTGGATATCAGC-ATATGTGTACTACCCCAAGAAGGTAATTTAAAATATCTGTCTGGACATAAGTGTATGTGCTGACTACAACGCAGTATAACACTGCTCTTTGTGATGCTGCTCTTCCAAACAGTAGTGCTGACCTGATGGTGTAGTACATGATTTCTCACCT-TTGACACCTTCATATTAGTAAATATTAGCTGTGTGTTCCACTATCAAAA s panTro1.chr19 62204910 240 + 82489036 AAAAACTATGTATTGTATTATATGGCACTTTGGATATCAGC-ATATGTGTACTACCCCAAGAAGGTAATTTAAAATATCTGTCTGGACATAAGTGTATGTGCTGACTACAACGCAGTATAACACTGCTCTTTGTGATGCTGCTCTTCC-AACAGTAGTGCTGACCTGATGGTGTAGTACATGAGTTCTCACCT-TTGACACCTTCATGTTAGTAAATATTAGCTGTGTGTTCCACTATCAAAA s rn3.chr10 86016479 219 + 110733352 AAGAACTCTGTGCTGTATTGTGTAGTTTTTGAGGTATCAGC-ACAAATGTTCAAGCAAAGAAAGATAATTTACAATAAGCATTTGAACATAAGCATGTGTGCCGATTACAAGAAAATATAAA---------------GTCATCCTTCC-AGCAGTAGCAAGGACCTAACAATGTAGCATGT---TTCTCATA--TTGACACCATCTTGTTAGTAAATGCCGCC--TGTGCTCTGCTATAAAAA s canFam1.chr9 37105328 205 - 53642819 taaaaCTATGTGCTATATTACATAGTACTTTGGATGTCAGCTATACATGTACA-------------GACTTAAGATACCTACATGGACTTAAGTGC-----CTGACTACCACAC--TATAACATTGCTCTTT-------TGTTTTCCC-AACAATAGCACTGACCTGATGATTCAGTACATGATTTCTCACATATTAACATCATCATGTTAGTGA----------TGTGTTCCACTATCAAAA a score=18581.0 s hg17.chr17_random 889540 56 + 2618010 AAACAGGTAATAATTCAAAGAAATTTCAGCATTAAAATCTT--CAGTTTCCCAGTTTA s panTro1.chr19 62205150 56 + 82489036 AAACAGGTAATAATTCAAAGAAATTTCAGCATTAAAATCTT--CAGTTTCCCAGTTTA s rn3.chr10 86017116 54 + 110733352 AAACAGGCATTAATTCAAATAAATTTC--CACTAAAACTGT--CAATTGCTAAGTTTA s canFam1.chr9 37105712 58 - 53642819 ATACAGGTAACAATTCAAAGGAATTTCAGCATTAAGATCTTCACAGTATGCAAACTTA a score=1533.0 s hg17.chr17_random 889596 3 + 2618010 AAA s panTro1.chr19 62205206 3 + 82489036 AAA s mm5.chr11 96943837 3 + 121648857 AAC s rn3.chr10 86017170 3 + 110733352 AAA s canFam1.chr9 37105770 3 - 53642819 AAG a score=53192.0 s hg17.chr17_random 889599 170 + 2618010 CACAAGTGAAACAA---GGTTGGCATATAAAAGTGCACTGATAACAA-GCTCATTTTCAATTTTTCTACTTGATGTTAT-TAAAGGATAGAATGTTAGTGTATCCTTGCTTTGTTTCAAACCCAGGATTAAGTCTTCTTGGCCTCCTATATAGACTG--CACTTCAACT-GAGCCAAA s panTro1.chr19 62205209 173 + 82489036 CACAAGTGAAACAA--GGGTTGGCATATAAAAGTGCACTGATAACAAGGCTCATTTTCAATTTTTCTACTTGATGTTAT-TAAAGGATAGAATGTTAGTGTATCCTTGCTTTGTTTCAAACCCAGGATTAAGTCTTCTTGGCCTCCTATATAGACTG--CACTTCAACTGGAGCCAAA s mm5.chr11 96943840 154 + 121648857 AACAAGTGAAATGCTTAAGTTGGCCTAT-CAATTGTGTTGATAATTA-ACTAATTTTCAATTCTTCT-----ATGCCATAGAAAGAGTAGAATGTCA--------TTTCTTTGTTTCAGTTCTAGGATTAAGTCT--TTGGACTTCTATACAGACTG--TACTTCAAAT-G----AAA s rn3.chr10 86017344 148 + 110733352 AACAAGTGAAATGCTTAAGTTGGCCTAT-AAATTGTGCTGATAAGCA-GCTCACTTTA--------------ATGCCAT-AGAAGAGTAGAATGTCA--------CATCTTTGTTTCAGCTCCAGGATAAAGTCT--TTGGACTTCTATACAGACTG--TACTTCAAAT-GAACCACA s canFam1.chr9 37105773 148 - 53642819 TAGAAGCAAAATGTTCGAGTTGACATGT--------------------ATTTTGTGTCAACTGATACAATATATGGAAT----GGAATAAAATAACAGTG-----TTTCCTTGTTTCAAACCCAGGGTTAAGTCTTTTTGGAGCCCCAAAAAGACTGTACACTTCAACC-GAACCAAA a score=1149.0 s hg17.chr17_random 889769 8 + 2618010 TACTAAGT s panTro1.chr19 62205382 8 + 82489036 TACTAAGT s mm5.chr11 96943994 8 + 121648857 TTCATAAA s canFam1.chr9 37105921 8 - 53642819 CACTAAGT a score=48561.0 s hg17.chr17_random 889777 164 + 2618010 AAGGGCTGTACCAAAGAGGCAGCTTGACGCCTGGTAACAA----------CTTTACAATGGAAGTTTCCT-ATGAGCTAGGGAGGCAGAAATCG-------------------GAGATAACA---------------------TTTTCCTGAATGA---------------------GTCTT----------------------------TACTATAGTCAC-----TCAGGAACATATCTTACATGTACGATAGTAAGACTCAAGAGG s panTro1.chr19 62205390 166 + 82489036 AAGGGCTGTACCAAAGAGGCAGCTTGACGCCTGGTAACAA----------CTTTACAATGGAAGTTTCCTAATGAGCTAGGGAGGCAGAAATCG-------------------GAGATAACAT--------------------TTTTCCTGAATGA---------------------GTCTT----------------------------TACTATAGTCAC-----TCAGGAACATATCTTACATGTACGATAGTAAGACTCAAGAGG s mm5.chr11 96944002 222 + 121648857 AATGGCTGTACTAAAGTGGCAACATGGACCTTGGAAACAATTCTACAATCTTCTACAATGGAAGATTCCC-AGGCACTGCAGAGGTAGGGAGCC-------------------CAATGAGCC---------------------TTCTCTGCAATGAAGTGACGGGCTACATCACCAGGCCTTGCTGTGCTAGAAGGATGACATCATACTGTGTTGTAACCAC----ATGCATAATATGTCTTGCATTTACTACAGTAAGACTCAATA-- s rn3.chr10 86017915 215 + 110733352 AATGGCTGTACTAAA--AGCAGCATGGACCTCGGAAACAA----------TTCTACAATGGAAGATCCCC-AGGCAATACAGAGGTAGGGAGCCAATGAGCCTTCTCTGCAATGAAGTAACATGCTACATCTCCAGGCCTTACTGTGCTGGAAGGA--TGAC---------------GTCAT------------------------ACTGTGTTGTAACCACATACATAATAAATACATCTTGCATTTACTACAGTAAGACTCAATAAG s canFam1.chr9 37105929 161 - 53642819 AATGGCTCTACTGAAGAGGCAATTTGACTATTGGTAACAA----------TTTTACAATGGAAGTTTCCT-TTGAGCTAGGAAGGCAAGAATAT-------------------GAGAGAACTTT-------------------TTTTCCTGAATGA---------------------ATCTT----------------------------TATTACAATCAC-----TCAGAAATACATC-TACAGGTACTA---TCAGACCCAAGAG- a score=40096.0 s hg17.chr17_random 889941 122 + 2618010 GTTTTTTTCTGATTGTCAATGTCCTGAGACTTCAGTAAAAGAAAATCTCCAGTGTGACAATTCC------AAATGCCA----GTCT-GAAGCCTGAGTCAATTTGCCTAATAAAACTGATTTCACCATTAAAA s panTro1.chr19 62205556 123 + 82489036 GTTTTTTTCTGATTGTCAATGTCCTGAGACTTCAGTAAAAGAAAACCTCCAGCGTGACAATTCC------AAATGCCAT---GTCT-GAAGCCTGAGTCAATTTGCCTAATAAAACTGATTTCACCATTAAAA s mm5.chr11 96944224 114 + 121648857 TTTTTTTCCTGATTG-------CCTGATAAATTAAAAAATAAAAAATGTAAGTGCTGTAACTAC------ATTCGCAAT--CATTT-GGAAGCTGAAT-ACTTTCCCTAACGAG--TGACTCCACTGTTAAAA s rn3.chr10 86018290 118 + 110733352 TTTTTTTCCTGATTG-----------ACAAATCCAGATTAAAAAAAGCCCAGTGTTGTAACTACATGTAAATGTATAAT--GATTTGGAAGCCTGAGATACTTTCCCTAATAAG--TGACTCCACTGTTAAAA s canFam1.chr9 37106090 124 - 53642819 GTTTTTCTCTGATTGCCAAGGCCCTCAGATTTTAGTAAAAGAAAATCTCCAGTGTGACAACTCC------AAATACCAGTCAGCCT-GAAGCCTGAGTCACTTTGCCTTACAAG--CTATTTCATCGTTAAAA a score=60711.0 s hg17.chr17_random 890063 115 + 2618010 TAGCAATAATTGTTGCCTTGGTGGAACAGTTCTATAATAGCTAAAGACAAGAAGAAGCAGATAATT-AGTAAACTCAAGTTGAGCCAAGTTTTCTAACAA--GAAACACTGAAAAGAG s panTro1.chr19 62205679 115 + 82489036 TAGCAATAATTGTTGCCTTAGTGGAACAGTTCTATAATAGCTAAAGACAAGAAGAAGCAGATAATT-AGTAAACTCAAGTTGAGCCAAGTTTTCTAACAA--GAAACACTGAAAAGAG s mm5.chr11 96944340 114 + 121648857 TTGCAGTGGTTGTTGCGCTGGTGGAGCAGAACTGTAATTTCTCAAGTCAATGGGAAGCAAACAATC-AGT-CACTGGGACTGAGCTAAATCTTCTTACAA--GCGATGCTGGAAAGAG s rn3.chr10 86018615 117 + 110733352 TTGTAATGGTTGTTGTGTTGGTGGAACAGAACTATAATTTCTCAAGTCAATGAGAAGCAAATAATCAAGTCAATTGGAACTGAGCTAAATTTCCTTACAA-GGAGATGCTGAAAAGAG s canFam1.chr9 37106216 116 - 53642819 TGGTAATAATCATTGCCTTTGTGGAACAGGGCTATAATTTCTAAAGACAATAGG-AGCAAATAATT-AGCAGACACAAATTGAGCCAAGTTTTCTAACAAAAGAGACATTGAAAAGAG a score=1342.0 s hg17.chr17_random 890178 6 + 2618010 CCATTT s panTro1.chr19 62205794 6 + 82489036 CCATTT s mm5.chr11 96944454 6 + 121648857 CAAGTC s canFam1.chr9 37106332 6 - 53642819 CAAGTT a score=5163.0 s hg17.chr17_random 890184 29 + 2618010 GCAGAAGGTCAAAAATAATTACCATTAAT s panTro1.chr19 62205800 29 + 82489036 GCAGAAGGTCAAAAATAATTACCATTAAT s canFam1.chr9 37106338 28 - 53642819 GCAGAAAGTCAAATGTAG-TACTACTAAC a score=21346.0 s hg17.chr17_random 890213 77 + 2618010 GTAAAAATGCAAAAGGCACAGAATATTGGTATGTGATGTTTGTGGCTACT--AATATGCAATTAAAGTTTTAAACTATA s panTro1.chr19 62205829 77 + 82489036 GTAAAAATGCAAAAGGCACAGAATATTGGTATGTGATGTTTGTGGCTACT--AATATGCAATTAAAGTTTTAAACTATA s mm5.chr11 96945456 77 + 121648857 ATAAAGAATTTAAATACACAGATTACTGACATGTGTACTCTGTGACTACT--TATAAACAGGATGAAGTTAAAACTGTA s canFam1.chr9 37106366 79 - 53642819 ATAAAAATTTTAAACATACAGAACATTGCTATTTATTGTTTGTGGCTACTTATATATGCAATAAAACTTTAAAAATATA a score=-595.0 s hg17.chr17_random 890290 7 + 2618010 CGTAGGA s panTro1.chr19 62205906 7 + 82489036 CATAGGA s mm5.chr11 96945533 2 + 121648857 CT----- a score=15641.0 s hg17.chr17_random 890297 85 + 2618010 ATAAAAAGGAATAATACGCACCTACCTGAAG-------AAAGAAGTTACTTCTAGAGGCAGGGTGGGACGAGATGGAAACGGGCTTTAGTGG s panTro1.chr19 62205913 85 + 82489036 ATAAAAAGGAATAATACGCACCTACCTGAAG-------AAAGAAGTTACTTCTAGAGGCAGGGTGGGACGAGATGGAAATGGGCTTTAGTGG s mm5.chr11 96945535 82 + 121648857 -----ATGCCGCATTCTGCACTTATCTCTAGGTGGGTAACAGGAGTTACCTTT--GAGCATAGTAAAACAGGA---AAATGAATTTCCGTGG s canFam1.chr9 37106641 81 - 53642819 ATATATAGGAATAAT----ACCTATACCTAA-------AAAGAAGCTACCTTTGGGATGGGGGTGAGAAGAGATTGAAATGGATTTTAGTGC a score=6592.0 s hg17.chr17_random 890382 9 + 2618010 TATCTGTGA s panTro1.chr19 62205998 9 + 82489036 TATCTGTGA s mm5.chr11 96945617 9 + 121648857 TATTCGTTA s rn3.chr10 86020814 9 + 110733352 TATCTGTGA s canFam1.chr9 37106722 9 - 53642819 TATCTGTGA a score=-488.0 s hg17.chr17_random 890391 16 + 2618010 CATTTTA-TTCCCCCCC s panTro1.chr19 62206007 17 + 82489036 CATTTTATTTCCCCCCC s rn3.chr10 86020823 9 + 110733352 -------CTTTTTCCC- s canFam1.chr9 37106731 14 - 53642819 CATTTTACTGCCCA--- a score=76638.0 s hg17.chr17_random 890407 182 + 2618010 AAAAAAAGCATGCACAGTCTGATGAAAAT-GGGGCAAAATGTTAACAT-CTGTTTAATCT-CATAGTGTGTGAC-TTTCTTGTATTTCTAAAATACTTCCtaatttaaaataaaattttaaaGAGATTACAAGTGACCAAATAAACCAAGAACCACATACTTGTATGGTGTTCAAAACAAAATCAC s panTro1.chr19 62206024 184 + 82489036 AAAAAAAGCATGCACAGTCTGATGAAAATGGGGGCAAAATGTTAACATCCTGTTTAATCT-CATAGTGTGTGAC-TTTCTTGTATTTCTAAAATATTTCCtaatttaaaataaaattttaaaGAGATTACAAGTGACCAAATAAACCAAGAACCACATACTTGTATGGTGTTCAAAACAAAATCAC s mm5.chr11 96946007 167 + 121648857 AAAAATAGTATAAACAGTCTAAAG-CAAT-GAGGCAATATACTAA-AT-CTAGGTAA--------------GTC-GTTTCTGTATTTCTAAAACATTTCCCGGTTCAAAATAAAAATAAAATCAGATTACAAATGACCAAATAAAACAAAAACTACAGGTTCAAAAGGTGTTCAAAAGTAAATCTC s rn3.chr10 86020835 165 + 110733352 AAAGATAGTATAAA-AGTCTGATG-CAAC-GAGGCAA-ATATTAA-AT-CTAAGTAA--------------GTTATTTTCTGTATTTCTAAAACATTTCCTGATTCAAAATAAAAATAAAAACAGATTACAAATGACCAAATAAATCAA-AACCACACGTTCATAAGGTGTTCAAAAGTAAATCTC s canFam1.chr9 37106745 183 - 53642819 AAAAACAACAAGCACAGTCTGAAACAAAT-GAAGGAAAACATTAATAT-CTATTAAACATGTGTGGTAGGTTAC-TTTTCTACATTTCTAAAATACTCCCTAATTTAAAGTAAAATCTTAAAGTAGTTACCAGTGGCTAAATAAACTGAGAACTACATACTCGAATGATGTTCAAAACTGAATTGC a score=-31.0 s hg17.chr17_random 890589 1 + 2618010 T s canFam1.chr9 37106928 1 - 53642819 C a score=273.0 s hg17.chr17_random 890589 1 + 2618010 T s panTro1.chr19 62206208 1 + 82489036 T s mm5.chr11 96946399 1 + 121648857 T a score=0.0 s hg17.chr17_random 890589 1 + 2618010 T a score=222524.0 s hg17.chr17_random 890590 502 + 2618010 AAAATCTAGAGAACTAATCTCAGTTAACAAC--AAAAGCCATCCGAAGGCTCAGTTATTTCCCACTGACTCACATACAGATTAGAGTAAGATTTACTTCACAACAAGAGCAGGCTCATTTATGTGGCAAAGTTCGGAGAAGCTTCACAGATAATTTACTACTCAAGACCACATTTACCCAGGTTGTATCAGA--GTATCAGTTGT-ATCTAGAACCAGGAAGCTAA----AAAGAAAGAAAAAAAA-AAAGGCCTGGATGAAAAG---CCAAAATAGGTGATACAAAGTCCGTACAATAAAACACATACCCTTTACTCAGAAGAGAATCCAACAAACTCTCACACAGCAATTGATTTTTTAGCCCAAACAAGCTT-GTTTATCTGGCTACTAAGGCTTCTTCAGAT-GAAGTTCAGTAAAATACAAGAGGGAAGAAATTGCACAACAGGCA--GCAACAAGGCACAATAAGCAGCAAGAAGAA-----TCTGAGAGTAAGGAA-AACA-AAACAATTTTAAAGAAC s panTro1.chr19 62206209 507 + 82489036 AAAATCTAGAGAACTAATCTCAGTTAACAAC--AAAAGCCATCCGAAGGCTCAGTTATTTCCCACTGACTCACATACAGATTAGAGTAAGATTTACTTCACAATAAGAGCAGGCTCATTTACGTGGCAAAGTTCAGAGAAGCTTCACAGATAATTTACTACTCAAGACCACATTTACCCAGGTTGTATCAGA--GTATCAGTTGT-ATCTAGAACCAGGAAGCTAAAAAGAAAGAAAGAAAAAAAA-AAAGGCCTGGATGAAAAG---CCAAAATAGGTGATACAAAGTCCATACAATAAAACGCATACCCTTTACTCAGAAGAGAATCCAACAAACTCTCACACAGCAATTGATTTTTTAGCCCAAACAAGCTTAGTTTATCTGGCTACTAAGGCTTCTTCAGAT-GAAGTTCAGTAAAATACAAGAGGGAAGAAATTGCACAACAGGCA--GCAACAAGGCACAATAAGCAGCAAGAAGAA-----TCTGAGAGTAAGGAA-AACA-AAACAACTTTAAAGAAC s mm5.chr11 96946400 481 + 121648857 AAAATTTGGGGTGCTAAACT-------CAAC--AACAACCATCAGAAGGTTC-GTACTTCACCACTGACTCGAGTACAGATTAGAGT-AGATTTACTTTACAATAAAAACAGGCTCATTTATGTAGCAAAGTTCAAAGATGTTTCACAGATAACTTGCTACTCAAGACTACATTTATCCTGGCTGTATTAGA------CATTGATAATCTAGAACCAGGAAGTTAA----ACAAAAAGAAAAAAAAGAAAGACTTGAACACAACA---GCAGACTAGATACTACAAAGTCCATACAATAAAGCTGGTCCTGTTCACTCAGATGCAAATCCACCCAACTCTCACTTCGAAACTTGTTTT------------------GCTTGACTCATTACATAGACCTCTCCTGCTCCAGGTTCAGTAAAACAGAAGA--GAAGACAGTGCAAAATAGGCAGTGTGACAAGACACAACCCACAACAAAAAGCAGTATGCCCGAGAGCAAGGAGCCACA-AACCAACTCTAAAGGAC s rn3.chr10 86021000 481 + 110733352 AAAATCTGGGGTGCTGAACTCAA-TAACAA---AACAACTATCAGAAGGCTTGGTTCCTTGCCGCTGACTCACAGATAGATTAGAAT-AGATCTACTTTACAATAAAAACAGGCTCATTTATGTAGCAAAGTTCAAAGAAGCTTCATAGATAACTTGCTACTC-AGACTACATTTATCCCAGCTGTATTAGA------CATTGATAATCTAGAACCAGGAAGTTAA----ACAAAAAGGAAAAA---AAAGGCTCCAACACCAGAGTTCCACAATAGATAATAT-GAGTCCGTACAATAAAGCTTATACAGTTTACTCTGAAGCAAAGCCATCCAGCTCGCACTTAGAAATTGGTTTCTTTTGAC-----------TCTTACATTACCTCT---------CCAGCTCACTGTTCAGTAAA----CAGAGGAGAGGCCGTGTGGAGTGGGCAGTGTGACAAGACACAATTCACAACAGAAAGCAATGTGCCTGGGGGCAAGGAG-CCCACAGCCAACTTCGAAGGAC s canFam1.chr9 37106929 498 - 53642819 AAGATTTGGAGAACTAATTTCAGTTAACAACAAAACAGCCACTGGAAGACTCAATCTTTTGCCACTGATTCACATACAGATTACAGTAAGATCTACCTCACAATAAGAATAGGCTCATTTATGTAGCAAAGTTCAGAGAAGTTTCATAGATAATTTACTACTCAAGATCGTATTTGTCCAGGTTGTACTGGACAATATCAATT---ACCTAGAACCCGGAAGTTAA------------AAAAAAAA-AAAAGACTATATAAAAG----CCAGAATAGATGATACAAAGTCCATACAATAAAGCTCATTCCCTTCATTCAGAAGAAAGTCCATCAAACCTTCACTTAGAAATTTCTTTTTAAGGTCAGACAAGCT--TTTTATCTGGTTACTTATACCTCCTCAGAT-CAAGTTCAATAAGCTAGAAGAAGGAATAAATGGCACAATAGGCA--GCAACAAGGCACAATAAGCTGCAAGAAGTAAAAA-GCGAACAGTAAAAAA-AAAA-AAAAAACAATAAAGAAC a score=1939.0 s hg17.chr17_random 891092 5 + 2618010 AGACA s panTro1.chr19 62206716 5 + 82489036 AGACA s rn3.chr10 86021481 5 + 110733352 AGGTA s canFam1.chr9 37107427 5 - 53642819 AGATA a score=300.0 s hg17.chr17_random 891097 1 + 2618010 C s panTro1.chr19 62206721 1 + 82489036 C s rn3.chr10 86021486 1 + 110733352 C a score=80009.0 s hg17.chr17_random 891098 882 + 2618010 AGGCTagccgggtgcggtggctcaggcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcacgagttcgagaccagcctggccaatatggtgaaaccccttctctactaaaaattcaaaaattagcctggcatgatggcaggtgcctgtagtcccagctacttggatgaggcaggagaatcgcttaaacccgggaggcggaggttgcagtgagctgcgatcacgccactgcactccggccttggcgacagagaaagactctgtctcaaaaaaaaaaaaaaaaaaaaaagaaCAGATATGgactaggcgcggtgggtcatgcctgtaatcccagcactttgggaggcagaggcgggcggatcacctgaggtcgggtgtttgagaccagcctagctaacatggtgaaacctggtctctacagaaatacaaaaattagccaggtgtggtggcatgcacctgtaatcccagctactagggaggctgaggcaggagaatcccttgaactagggaagtggagtttgcagtgagccgagatcgcaccactgcacactccagcctggcctaggcaacagagtgagactctgtctc-----aaaaaaaaaaaaaaaaaaaaaagaaCAGATATggcttggcgcggtggctcacacttgtaatcccagcactttggcaggcggaggcaggcagatcacctgatgtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctactagggaggctgaggcaggagaactgcctgaacccgggaggcagaggttgcagtgagccgagattgtgccactgcac s panTro1.chr19 62206722 878 + 82489036 AGGCTggccgggtgcggtggctcaggcctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagttcgagaccagcctggccaatatggtgaaaccccttctctactaaaaattcaaaaattagcctggcatgatggcaggtgcctgtagtcccagctacttcgatgaggcaggagaatcgcttaaacccgggaggcggaggttgcagtgagctgagatcacgccactgcactccggccttggcgacagagcaaga--ctgtctc-------aaaaaaaaaaaaaaagaaCAGATATGgactaggcgcggtgggtcatgcctgtaatcccagcactttgggaggcataggcgggcggatcacctgaggtcgggtgtttgagaccagcctagctaacatggtgaaacctggtctctacaaaaatacaaaaattagccaggtgtggtggcatgcacctgtaatcctagctactagggaggctgaggcaggagaatcccttgaactagggaagtggaggttgcagtgagccgagattgcaccactgcacactccagcctggcctaggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaagaaCAGATATggcttggcgcggtggctcacacttgtaatcccagcactttggcaggcggaggcaggcagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctactagggaggctgaggcaggagaactgcctgaacccgggaggcagaggttgcagtgagccgagattgtgccactgcac a score=13486.0 s hg17.chr17_random 891996 144 + 2618010 tcttgtgaagaaggtgcctgcttccccttccccttctgccatgattgtaagtttccggaactgcaagtcaattaagcctgtttcctttataaattacccaatctcaggtatttctttacatcagtgtgaaaacaaatgaataca s panTro1.chr19_random 41326071 144 + 57627672 tcttgtgaagaaggtgcctgcttccccttccccttctgccatgattgtaagtttctggaactgcaagtcaattaagcctgtttcctttataaattacccaatctcaggtatttctttacatcagtgtgaaaacaaatgaataca a score=49161.0 s hg17.chr17_random 892140 451 + 2618010 GTCCCCTTCCCTGA-GGTGCCTTCTCCTTAGGCAACCAGCTGCCCCCATGCTCCTCTTCT-------------GCCCCCC-----TGGTATTTCCTTTCCCCTCATGAGGCCCAAGTGATCCACATGGCCAGCCACAGCCCCATCCTACTGCAGGCCTGTGTGGCTGCTAGAGAGGCCAGGCTCCTTTCCGCACCCCGAGGCTGCCCGATATGCTTTCTGCATCCTGTAGAAAACTGACCCACTATTCTCATACTGGTG-CAACTTCTTCCATTACCTCAAAACTGGACA------ACGTGAACTT-----GTTTCTTGTCTCTTCTTGCTAGGGCTGTCACTGGGACAGTCCGAGATGGGGGGGTGGGGGGAGACA-----atggatgaatggatggatgaatggaCAGTAGTCCAGGGAGATGTCCCTGTGTGTCCTGAACTGGGACCTTCCTCCAATGAGAAGCCTTCCTGAGTGAGTTTATAc s panTro1.chr19_random 41326215 452 + 57627672 GTCCCCTTCCCTGA-GGTGCCTTCCCCTTAGGCAACCAGCTGCCCCCATGCTCCTCTTCT-------------GCCCCC------TGGTATTTCCTTTCCCCTCATGGGGCCCAAGTGATCCACATGGCCAGCCCCAGCCCCATCCTACTGCAGGCCTGTGTGGCTGCTGGAGAGGCCAGGCTCCTTTCTGCACCCCGAGGCTGCCCGATATGCTTTCTGGATCCTGTAGAAAACTGACCCACTATTCTCATACCGGTG-CAACTTCTTCCAATACCTCAAAACTGGACA------ACGTGAACTTATCTTGTTTCTTGTCTCTTCTTGCTAGGGCTGTCATTGGGACAGTCCGAGATGGGGGG-TGGGGGGAGACA-----atggatgaatggatggatgaatggaCAGTAGTCCAGGGAGATGTCCCTGTGTGTCCTGAACTGGGCCCTTCCTCCAATGAGAAGCCTTCCTGAGTG--TTTCTAc s mm5.chr11 60889528 396 - 121648857 GCCCCCTTCTGGAACGGTGCCTTAT--TTAGGCCTGTAGCTACATGTACCCTCCTCCATTCCAGGACTAAGTGGCCTCCTTACCATAGGCTTTCTTTTCACCTCATTAGGCCCAAGTAATCCACACAGCCATCCCCAGGTCCGCCTCACTGATGACGTG-------------------GGATTCCTTTTCTAGCCCCAAGAC--ACTGCTATGCTTTCTG---------AGGTATTGGCCC--------CAGACTGATGACACCTTTCCCCAAGACCTTAAAGCTGGACACCTCTGGCGCTGGCCC-----ATTCTGTTTCTCCACATGCTT---------------------------------TGGAGGCAGACAAACCCAGGGATGGATGGATGCATGCATG----------CATGTATGCATGCTTGTGTCCCGGGA---GGGTGACTCCACCAAGCATCAGGTCCCCTGGGTGAGCTTAGAC a score=34691.0 s hg17.chr17_random 892591 384 + 2618010 agtcatcccttggtatccatggattagttctagggtccccggggatgccaaaatccatggatcctcaagtctctgacataacatggcctagtatttacatatcagctatgcacatcctcccgtagacattagaccatctctggattattcatgatgtgtaatacaatgcagatgctacataaatggtcgtgatactggattctttagggaataatgacaagaacaaactctgcacatgttcaatagaaacataaccgtccaatttattttctgaatattttccatctgctgttgctgaatctacagatgcagagctcctggatacgagagccaagtgTGCTTTGAGAGTAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGC s panTro1.chr19_random 41326667 384 + 57627672 agtcatcccttggtatccatggattagttctagggtccccggggataccaaaatccatggatcctcaagtctctgacataacatggcctagtatttacatatcagctatgcacatcctcccgtagacattagaccatctctagattattcaggatgtgtaatacaatgcagatgctacataaatggtcgtcatactgtattctttagggaataatgacaagaacaaagtctgcacatgttcaatagaaatataaccgtccaatttattttctgaatattttccatctgctgttgctgaatctacagatgcagagctcctggatatgagagccACGTGTGCTTTGAGAATAGGGTGGGTGAGGTTGCTAATGAGTACAGGGGAGC a score=8941.0 s hg17.chr17_random 892975 49 + 2618010 AGGTGTTGATCAGGAGGACCCTGCACTGGGGCATCTGGACGTCCTGCCT s panTro1.chr19_random 41327051 49 + 57627672 AGGTGTTGATCAGGAGGACCCTGCACTGGGGCATCTGGACGTCCTGCCT s rn3.chr2 189864440 49 + 258222147 AGGTGTGGCTCTGGGGGGCCCTGGCCTGGGGCCTCAGGTTGGGTTGCCT a score=46221.0 s hg17.chr17_random 893024 513 + 2618010 CAGGACTTGAGACTCCAGTTGGATGGCACAGGCAGACTC---------------AGCCCAGGTCAAAGCCGTCCCCTTGAAGTTTCTTTTTATCCCAAGCTCTTTCTGGCCCCTGGAATTTGGCATCCCCTAGGCCCTGTGTGGAAGGACAGATGAACCAGGTTTTAGATAACATGTCTAGAAGAGTGAGCCCCTACTGTGTGCCCGGCACTTTCCCCACAGGATCCTCTAGCTAGAATATCCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCAGAAATGAAAAAGCGATACCATTAGAGACACTAAAAAGACCATTAGGTAATAGTACTAGCTTTTGTATTCTGAGATCCAACAGCAGCAG---TCACTTCCCTCCACCGCTATGTGTATCCCAGGACCACCCTGGGCAGGGAGGGCTGAGGTTAGGGAGCAGCCATGGATGCTCTGATGCTGGCCCTGGGCCTCGGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGGGGCAGCCGGGCCTGGCCAG s panTro1.chr19_random 41327100 531 + 57627672 CAGGACTTGAGACTCCAGTTGGATGGCACAGGCAGACTCGGCACAGGCAGACTCAGCCCAGGTCAAAGCCGTCCCCTTGAAGTTTCATTTTATCCCAAGCTCTTTCTGGACCCTGGAATTTGGCATCCCCTAGGCCCTGCGTGGAAGGACAGATGAACCAGGTTTTAGATAACATGTCTAGAAGAGTGAGCCCCTACTGTGTGCCCGGCACTTTCCTCACAGGATCCTCTAGCTAGAATATCCAAGGGTCATGGAGAGAAATACCCAGTTAAAATATCAGAAGTGAAAAAGCGATACCATTAGAGACACTAAAAAGACCATTAGGTAATAGTATTAGCTTTTGTATTCTGAGATCCAGCAGCAGCAGCAGTCACTTCCCTCCACCCCTATATGTATCCCAGGACCACCCCGGGCAGGGAGGGCTGAGGTTAGGGAGCAGCCATGGATGCTCTGATGCTGGCCCTGGGCCTCGGGGGTGACAGTGATGAGGAACTGGGTGCACACATGAGTGGGGCAGCCGGGCCTGGCCAG a score=4691.0 s hg17.chr17_random 893537 23 + 2618010 AGAAGCAGCACACACGTGCACAG s panTro1.chr19_random 41327631 23 + 57627672 AGAAGCAACACACACGTGCACAG s rn3.chr1 218282806 23 - 268121971 AGAAGTAACACAGGCATGCACAC a score=12408.0 s hg17.chr17_random 893560 43 + 2618010 ATGTGTTTACCCACATACACATGTGCACGCACGTGCACAAACA s panTro1.chr19_random 41327654 43 + 57627672 ACGTGTTTAGCCACATACACGTGTGCACGCACGTGCACAAACA s mm5.chr10 39573650 43 - 130633972 ATATGTGTGCCCACACACAAGTGTGTGCGCACACACACAAAGA s rn3.chr1 218282829 43 - 268121971 GTGTATCTATACACAGACACATGTTCATACAGGTATACACACA a score=3563.0 s hg17.chr17_random 893603 16 + 2618010 CATTGCAGGCAGGCAT s panTro1.chr19_random 41327697 16 + 57627672 CATTGCAGGCAGGCAT s mm5.chr10 39573693 16 - 130633972 CATTATAAGCAGACAT a score=11112.0 s hg17.chr17_random 893619 126 + 2618010 GTTGACGCCTCAGGCAGCGGAGGACCCTGACTCTGGGTGCTGCTGACCCGGGCAAGGCCCCACTGTGATTCGTGCCATGACCTCAGAATGTCACTGGTGCTTAGCACCTATCTGCTCTCTGGTCTG s panTro1.chr19_random 41327713 126 + 57627672 GTTGACGCCTCAGGCAGTGGAGGACCCTGACTCTGGGCGCTGCTGACCCGGGCAAGGCCCCACTGTGATGCGTGCCATGACCTCAGAATGTCACTGGTGCTTAACACCTATCCGCGCTCTGGCCTG a score=21003.0 s hg17.chr17_random 893745 202 + 2618010 CCTCAGTGGTCTACAGCAGTTACACACAGGCAGTGGTATCTGTGAGCAGCTCTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATGA-----CCCAGGCCAGCTGATTCA--TC---AGAATCAGGTGAGCGTGACCTGCTCTCTTCCCTCCAGGCGGACT--TGGGGGCAGTGGCTAC--GGTGCGGGCGGTGTTGGCCTCTGTGGGGCAGCTAC s panTro1.chr19_random 41327839 202 + 57627672 CCTCAGTGTTCTACAGCAGTTACACACAGGCAGTGGTATCTGTGAGCAGCTCTGTGGACTCAAAGGTTTTCTCCCTGAGAGGCATGA-----CCCAGGCCAGCTGATTCA--TC---AGAATCAGGTGAGCGTGACCTGCTCTCTTCCCTCCAGGCGGACT--TGGGGACAGTGGCTAC--GGTGCGGGCGGTGTTGGCCTCTGTGGGGCAGCTAC s danRer1.chrNA 154481136 198 - 390413307 CCTGAGGCCTCTACTGCAAGTCCAGGGAGAGAGGTGGACCTCCAGGTAGCTTACTGGGATCAGAGGCCTCTAGGTGGAGGGCCATGAGGCACCCTGGGGCCTCTACTGCAAGTCCAGGGAAAGAGGTGGA-----------------CCCCCAAGTAGCTTACTGGGGTCAGAGGCCCCTAGGTGTAGG-GCCATGAGGCACCCTGGGGCCTCTAC a score=26822.0 s hg17.chr17_random 893947 281 + 2618010 CGAGGAGGGTCATCCCtgagcactcaccaggcgcccgttctacactgcccgtgtagacgattggctctttcgtctccatggtggcttcgtagagtgggtgctgttcccaaatgtccccattcgacagatgagacgtctggggtcagagaggcagtaaccggcctgggaatccggacatgaccctgagttttgctctcagccctgccgtgtgctgtgctggaattcaggcctgaaccctgtgacctccctgccctagatcccaaatctgCCCAGGTTTCCCA s panTro1.chr19_random 41328041 281 + 57627672 CGAGGAGGGTCATCCCTGAGCACTCACCAGGCGCCCGTTCTACACTGCCCGTGTAGACGATTGGCTCTTTCGTCTCCATGGTGGCTTCGTAGAGTGGGTGCTGTTCCCAAATGTCCCCATTCGACAGATGAGACGTCTGGGGTCAGAGAGGCAGTAACCGGCCTGGGAATCCGGACATGACCCTGAGTTTTGCTCTCAGCCCTGCCGTGTGCTGTGCTGGAATTCAGGCCTGAACCCTGTGACCTCCCTGCCCTAGATCCCAAATCTGCCCAGGTTTCCGA a score=23493.0 s hg17.chr17_random 894228 256 + 2618010 TCCCGATGGGGCAGAG----CCTGGTCCTGGCAGAGCCACTGGTA---TAGAGCCACTGGTACAGATCCACTG--------------ACGGTCCTCAGAACACCTCTGT----------GCCCTAAGCTGG-GTCCTGATGGTCGCTGTGGGCCCCAC------------TGAACACACATGGTCCCTTGTCCGGGGGAGCCTGCTG-----------------------------------CCCTTGGGCAGCTGT-----------GGAAAATGAAGGAGCCCTGGAGGGCTGGCTGAGGGGAGACTATCTTCCCTTGTGTTCAAAGGGGTCCGGGCACTAGGG s panTro1.chr19_random 41328322 270 + 57627672 TCCCGATGGGGCAGAG----CCTGGTCCTGGCAGAGCCACTGGTA---TAGATCCACTGGTATAGATCCACTGGTATAGATCCACTGACGGTCCTCAGAACACCTCTGT----------GCCCTAAGCTGG-GTCCCGATGGTCGCTGTGGGCCCCAC------------TGAACACACATGGTCCCTTGTCCGGGGGAGCCTGCTG-----------------------------------CCCTTGGGCAGCTGT-----------GGAAAATGAAGGAGCCCTGGAGGGCTGGCTGAGGGGAGACTATCTTCCCTTCTGTTCAAAGGGGTCCGGGCACTAGGG s danRer1.chrNA 154481371 323 - 390413307 TCCTGCT--GTCAGAGGCCCCTTGGT----GGAGGGCCAGGGGCACCCTAGGGCCTCTACTGCAAGTCTAGGGAGAGAG--------GTGGACCCCAGGGTAGCTTGCTGGGGTCAGAGGCCATAAGGTGGAGGCCAAGGGGGCACCCTGGGGCCTATACCGCAAGTCTATGGAGAGAGGTGGACCCCT-----GGGTAGCTTGCTGGGGTCATAGGCCCCTAGGTGAAGGGCCAGGGGGCACCCTAGTGCCTCTACTGCAAGTCCAGGGAGAGAGGTGGACCCCTGGGTAGCTTGCTGAGGTGAGAGGCCCCTAGGTGAAGTGCCAGGGGGC----ACCCTAGGG a score=82822.0 s hg17.chr17_random 894484 900 + 2618010 TTCTCCCCAGGTATTTCTTGCTCTGCGTGGTCCTCTTGAGGCCTCGCCCTCCTTTTGCCTCGAGTATTCCCAGGAGGGACGGTCCATCCAGCTGTTCTCCAGGACCAAGGACCCACTGTTCTTCCTCAGTGACCCAGGAAAATGAAGCCTCCTCCTGTTGGGACGGCTCAGAATGGTGGACTCCACAGTCCCTCCGCGAGAGACGTGGTTTCCATGCGTACAATAGATCTTCCTCATCCCCCAAACCCAACACCCTCCTGCTCAACAGGCGTTATTCCTAAAGTGGCTTCACTGTTCAGACTGAAGAGCCACGGTAGCCAAAGTGATGAGCGGAGTAGAACCGAGCAGTCGGGAGAGATCTTGTTCCCTGTAGGAAACTGGGCATCGCTGAGGCCCTGAGCATCCCAGGAGGCCGATTGCACAGAGACCTCTGGTCGCTGACCCCAGTCTGCCTCCACATCCCTGGAATAGCCCATCATGGGCCCTTCACCCTTGGCAGGTGGAAACCATTCAACCTGCTGGGGCCGGTGTGTCCCCATTTCATGGCATTGGGGGACAACAGGATTCTCTGTCTAGGTCCCACTGTACTCAAGTCCTTGGGAAGATGCCCACCCCTGCTTGGGACTTGAGACTCCAGAGACTGGAGCAGCTGTGGGCCACTGGGTCTGGCCCCTTTTTCCCT-GGGGGCGGCGGTGGAATGGGGGTTACGCAGCCAGCCAGCATCTGGGAGCCCGGCGAGAGCGGTTCAGGTGTT-CTCCGAAGCCGCCGC-GTACAGTGTGACCTTTAGACAATTCTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGTAGTTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACGAAAAGGTACAAGTCGGTCTGCTTCTTGG s panTro1.chr19_random 41328592 903 + 57627672 TTCTCCCCAGGCATTTCTTGCTCTGTGTGGTCCTCTTGAGGCCTCGCCCTCCTTTTGCCTCGAGTATTCCCAGGAGGGACGGTCCATCCAGGTGTTCTCCAGGACCAAGGACCCACTGTTCTTCCTCAGTGACCCAGGAAAATGAAGCCTCCTCCTGCTGGGACGGCTCAGAATGGTGGACTCCACAGTCCCTCCGCGAGAGACGTGGTTTCCATGCGTACAATAGATCTTTCTCATCCCCCAAACCCAACACCCTCCTGCTCAACAGGCGTTATTCCTAAAGTGGCTTCACTGTTCAGACTGAAGAGCCACGGTAGCCAAAGTGATGAGCGGAGTAGAACCGAGCAGTCAGGAGAGATCTTGTTCCCTGTAGGAAACTGGGCATCTCTGAGGCCCTGAGCATCCCAGGAGGCCGATTGCACAGAGACCTCTGGTCGCTGACCCCAGTCTGCCTCCACATCCCTGGAATAGCCCATCATGGGCCCTTCACCCTTGGCAGGTGGAAACCATTCAACCTGCTGGGGCCGGTGTGTCCCCATTTCATGGCATTGGGGGACAACAGGATTCTCTGTCTAGGTCCCACTGTACTCAAGTCCTTGGGAAGATGCCCACCCCTGCTTGGGACTTGAGACTCCAGAGACTCGAGCGGCTGTGGGCCACTGGGTCTGGCCCCTTTTTACCTCGGGGGCGGCGGTGGAATGGGGGTTACGCAGCCAGCCAGCATCTGGGAGCCCGACGAGAGCGGTTCAGGTGTTACTCCGAAGCCGCCGCAGTACAGTGTAACCTTTAGACAATTTTGTCTCACAGGATGGACGTGGTAGAGGTCGCGGGTAGCTGGTGGGCACAAGAGCGAGAGGACATCATTATGAAATACAAAAAGGTACAAGTCAGTCTGCTTCTTGG a score=145069.0 s hg17.chr17_random 895384 1479 + 2618010 AGGGAGGCCTCTTCCAGTGTGCCCTG-----GTCAAAGGGTCCTGGGCTCCCTAGGAGCACAGGGCAGGGACGGGTGGCCAATGCCCCCAGGCCCTTGCAACCCTTTACCTTG-------GACCCCTCACCAAGGCTCCCTCTGGGCTACAGGGACACCGAGCTGGGCTGCCAGAGGACAAGGGGCCTAAGCCTTTTCGAAGCTACAACAACAACGTCGATCATTTGGGGATTGTACAGTGAGTCCTCTGCACTCCCCTCACCCCTAAAGCACCTGTCTCAGCTCAGGAATGGGTTTGCTTTTAGAAAGGCCTTTCTGACGCAGGACATGTCTCACCAGGTCGGGTCAACCTCCTTTCCAGGGACAGAACTCCTCCCTGACTCCCCTGCAGGTCCAGCCCGAGGTTGTT---AGGCCAGAGGTGT--GGGGCCCATCTA-GGGAGCCGGTGGGAATGGAGACTGGGCTAGGTCAGGCCCCTGGGCGCTCAGCAGTTCTGTCGGCAAGTGAGCACAAGAGGAGCGGGGCAGCCTG--AGGGTCTGGCCC---TGTCTACTTGGAGACAACCCCGGTGAGATGCAAGGGTTATGGCCACAGGGTGAGGGGACGCCTGGCCCAGCCTCAGGG----CTGTTGTCCAGCAGGTCTCTGAGGGCC--CACCTGCCCCT--------GTTCTCCCCCATTCCCCTAGAGCTACAGCCCTCACTGTCCCG-----------------------------------------------TGAGGGGAAAAGGCATGGTGACAATGGGGGCTGTAGCCCTAGGAGAACGGGGGAGAAGATGGGCAGGGCCCCGTTCTGGGCATCTCACGGTGAGGCCAGGGAGGCAGCAGGGCTCGCGGCTAAAGACC-TGGGTCT---GGTGCTGGG-----------AAGGGATCT-----GGGGCCGGGTAAGAGGAGCCCAGCCAGG--------AGCCCATCCCTCAG------GGATCACAGGATGG---AGAGA----------CAGAGGATCC--CTGG---GGAGGT----------AGGGCGGGAGGG-----AGCTGACGAGCCGTGCCACTTCTGAAACGCAGGGTGTGTGGCTCGGGTGCAGGGAGAGGCAGG-TGGATGCTGGGAGGTCAGAACCTGCAAGGGCCTTGGGGCTGTCAAGTGGGGTGGGCCCCTGGTGCAGCCAGAGTACACCGGGCAGGTCTCAGGGCAGGCTCCCTTGACCCTGGCGGGGGGATGTGGTCACTCCCTGAGGGACTCCTGTCAGGGCCCGGTCGCCCACCCTGGGCGGCCCCCATCCCATCTCAGGGCTA------ACCTTTCTCAGCTCCAGCAGAAAGCACCACCTCGAGTCCAGGACGGGCAGCCCCATTGGGCAGCCTGACCGCCCCCCACGCCAGGGGCCCCAGTAACCCCGGCCAGGCTGTCCCTACACTCCT---TCTTCTCCCAGGTCCTGCCCCTCCTGGGAGTCAGCCCCACAGGAAGGCCCTTGTCCTCCCTTCCCTGTGCCTTCTCCTGGGCTGAGCCCTGAGCTGGAAAGGGACAGAGCCAGTCCTTTCTGGGGGTCGGCACCCAGGCTGGGGCCGCTCCAGGCCCCGTGCAG s panTro1.chr19_random 41329495 1486 + 57627672 AGGGAGGGCTCTTCCAGTGTGCCCTG-----GTCAAAGGGTCCTGGGCTCGCTAGAAGCACAGGGCAGGGACGGGTGGCCAATGCCCCCAGGCCCTTGCA-CCCTTTACCTTG-------GACCCCTCACCAAGGCTCCCTCTGGGCTACAGGGACACCAAGCTGGGCTGTCAGAGGACAAGGGGCCTAAGACTTTTCGAAGCTACAACAGCAACGTCGATCATTTGGGGATTGTACAGTGAGTCCTCTGCACTCCCCTCACCCCTAAAGCACCTGTCTCAGCTCAGGGATGGGTTTGCTTTTAGAAAGGCCTTTCTGATGCAGGACATGTCTCACCAGGTCGGGTCAACCTCCTTTCCAGGGACAGAACCCCTCCCTGACTCCCCTGCAGGTCCAGCCCGAGGTTGTTGTTAGGCCAGAGGTGT--GGGGCCCATCTATGGGAGCCGGTGGGAATGGAGACTGGGCTAGGTCAGGCCCCTGGGCGCTCAGCAGTTCTGTCGGCAAGTGAGCACAAGAGGAGCGGGGCAGCCTG--AGGGTCTGGCCC---TGTCTACTTGGAGACAACCCCGGTGAGATCCAAGGGTTATGGCCACAGGGTGAGGGGATGCCTGGCCCAGCCTCAGGG----CTGTTGTCCAGCAGGTCTCTGAGGGCC--CACCTGCCCCT--------GTTCTCCCCCATTCCCCTAGAGCTACAGCCCTCACTGTCCCG-----------------------------------------------TGAGGGGAAAAGGCATGGTGACAATGGGGGCTGTAGCCCTAGGAGAATGGGGGAGAAGATGGGCAGGGCCCCGTTCTGGGCATCTCACGGTGAGGCCAGGGAGGCAGCAGGGCTTGTGGCTAAAGACCCTGGGTCT---GGTGCTGGG-----------AAGGGATCT-----GGGGCCGGGTAAGAGGAGCCCAGCCAGG--------AGCCCAGCCCTCAG------GGATCACAGGATGG---AGAGA----------CAGAGGATCC--CTGG---GGAGGT----------AGGGTGGGAGGG-----AGCTGATGAGCCGTGCCACTTCTGAAACGCAGGGTGTGTGGCTAGGGTGCAGGGAGAGGCAGG-TAGATGCTGGGAGGTCAGAACCTGCAAGGGCCTTGGGGCTGTCAAGTGGGATGGGCCCCTGGTGCACCCAGAGTACACCGGGCAGGTCTCAGGGCAGGCTCCCTTGACCCTGGCGGGGTGATGTGGTCACTCCCTGAGGGACTCCTGTCAGGGCCCGGTCGCCCACCCTGGGCGGCCCCCATCCCATCTCAGGGCTA------ACCTTTCTCAGCTCCAGCAGAAAGCACCACCTCGAGTCCAGGACGGGCAGCCCCATTGGGCAGCCTGTCCGCCCCCCACGCCAGGGGCCCCAGTAACCCCGGCCAGGCTGTCCCTACACTCCTCCTTCTTCTCCCAGGTCCTGCCCCTCCTGGGAGTCAGCCCCACAGGAAGGCCCTTGTCCTCCCTTCCCTGTGCCTTCTCCTGGACTGAGCCCTGAGCTGGAAAGGGACAGAGCCAGTCCTTTCTGGGGGTCGGCACCCAGGCTGGGGCCGCTCCAGGCCCCGTGCAG s canFam1.chr37 3103501 1326 + 33897405 AGACAGGCCCTTCCTCTGGTGCCCGGCCAATCTCAGAGGGT-CGGCGCTCCCTCAGGATTCAGGGGAGGGAGGAGC-CCTTCTGCTCC----CTCCTGTC-CCCATTTCCCTGCTCTGATGGGTCCCCACCACGGAGCCCTCTCTGTTGCAGGCACACCAAGCAGGGTCTCCTCAGGA-------CCTGTTACTGTGGAAGGTCAC-----------CAACCACCAGGGCTTTCTGCAGTGAGTCCCCTGGACACCCCTCATC----------------CATCTCAGGGAGGGTGGCATTTGCAGGAACACTTCTCTGGAGGCTGACC--CCCCCCCAGGTTGGG---ACCTCATCCCCTGGAGC-----------------CCTCTGAGGGCCATGTCTGCGCTGGGCTGCAGCTGAGAGACCCCGGAGGCCGACCCG-GGACGTGGGCAGGAAGGGAGCTGGGCCCAGGGGAGGCCCCTGGACACTCAG-----------------------AGGAGGGGCCCCCACGCCTGTTTTGGGCAGGCCCAGGTGTCTGCCT----CCTGCATcggggggg------------gggcgcgggggggggggggTCCAGTCCCTTCAGCAGGGGATCCCGTGGTTGAGGAGCTCT---GGGGCCGGGGCGTGCTCTCCATAGGGGGTTCTCACCCACACCCCCC-AGCCAGGGCCCCCACAGTCCCGAAGGCTTCTGCGGGGCTGCAGCTAGATGCCGGGGACCAGGCCAgggcgggggggggggggcgccgcAGAAGGAGGGCCCGACCAGCTTGGACAGGAGGAGGGAAGAGGAGGAGGGGGCTGCCCTGGGCG---------GGAACGAGGGAGGGGACA-GCCCAGTGGCCTAGGTCGCAGGGGACGAGGATGCTGGGTCAACAGCCCCACGGGAACTTGATGGAGGCTGG------AGACCCCAGGTGGGGCTCCCTCAGCCCTGCTCACGGCCCAGTGGCTGCTGGGATGGCTCAGGGGTGGTCGTGCTCAGGGGCTCCAACAGGACAGGAGGTGAAATGGGCCAGGGTGGCAGAGGGGACAGCCAGAGAAGGGAGTCA---GGGGACAGCAGGGGGAAT-GCCAGGGGGCAGGGGGAAGCCGGCTGGACGCTGGGCAGTCAGGCTCTGGGGAGGCGGAGGGAC--CTCAGCGGGACGG--TCATGGGGCACCCAAGCCACACT-GACAGCTCTC-GGGCTGGTCC-----ATCCAGGAGGGG-GACA-GGTCACCCCCTGGGGG-------------------------CGCCGAGGGGTCCCCG-CCCAGCCCACCACCAGCAAACACCCTTCTCAGACCCCCCAGA---CGCCGCC--------------------------------CCTGCCCGCCC----------------------------TCAGGCCG--------------------CTGGCAGCCCCTGCCCTCCCTTG-------------AGGA--------GCCCTGCCCTCCCCAGGCC----CCTGGGTGCAGACGGGGGGTGG-----------------------TGGTGGCTA----------TGGGGCCG----GGGCCTCAGG--- a score=15577.0 s hg17.chr17_random 896863 73 + 2618010 TTCCTCAGCTCTGCCTGGGTTGCCTTACAGTGAGACGGAGCTGCCTCCTCTGACTGCGCGGGAGGCGAAGGTA s panTro1.chr19_random 41330981 73 + 57627672 TTCCTCAGCTCTGCCTGGGTTGCCTTACAGTGAGACGGAACTGCCTCCTCTGACTGCGCGGGAGGCGAAGGTA s canFam1.chr37 3104827 66 + 33897405 -------GCTCTGCGTCTCTTGCCTTCCAGGGACAAGGAGCTGCCCGGCTCCAGCCCCCAAGAGGCCAAGGTG s fr1.chrUn 343015280 62 - 349519338 TTCTTCTTTTCTGCCC-----------CAGCGAGGAAGAGCTGCCAACTCCCAGCGCACTGGAGGAGAAGGTA a score=33600.0 s hg17.chr17_random 896936 434 + 2618010 AGAGCCTGATGCGTGGAGGGGCTGGTCCAGGGACGTAGGGACTGGGCGGGTGGTCAGTGAGGCAGAGGAAGCAGCTGGCCTGAGCGGTGGCGGGTGAGGGCAACACGCTGTCACTGGGAGGGGCAGCAGTCCCTGCTGGACCTGACCCCAGG---TTGCTGTTCACTTTGGCAGTTTGATAAAATTCCAAAAGGAGAACCACAGTCCTGGCTTGGGGGTGGCTGCGCGCTTGTGTCAGGACCCCACCTAGAGGCTGGGACCTAAGACTGGTGTGTCTGTGGCCTGAGGATGGTACATCCCGGGGTCCCAAAGCCAGCCCACTGGTGCTCATTTGCTCAAAGGCTCTCAGCCCTTGAGGTCTGCCCTTCCCTGGCTCCTTCCAGCTGGCTCCCACCAGGG-CTCCAGAGCCCAAGACCCAGCATCTGCGGGCGGCTCTG s panTro1.chr19_random 41331054 434 + 57627672 AGAGCCTGATGCATGGAGGGGCTGGTCCAGGGACGTAGGGACTGGGCAGGTGGTCAGTGAGGCAGAGGAAGCAGCTGGCCTGAGCGGTGGCGGGTGAGGGCAACGCGCTGTCACTGGGAGGGGCAGCAGTCCCTGCTGGACCTGACCCCAGG---TTGCTGTTCACTTTGGCAGTTTGATAAAATTCCAAAAGGAGAACCACAGTCCTGGCTTGGGGGTGGCTGCGCCCTTGTGTCAGGACCCCACCTAGAGGCTGGGACCTAAGACTTGTGTGGCTGTGGCCTGAGGATGGTACATCCCGGGGTCCCAAAGCCAGCCCACTGGTGCTCATTTGCTCAAAGGCTCTCAGCCCTTGAGGTCTGCCCTTCCCTGGCTCCTTCCAGCTGGCTCCCACCAGGG-CTCCAGAGCCCAAGACCCAGCATCCGCGGGCGGCTCTG s canFam1.chr37 3104893 230 + 33897405 AGAGCCC-----------------GTCCTGGGCC-------CCGGGCAG---------------------------------------GACGTGTGGGGG------GCTG---------GGGCCAGCTGTCTGTACCCCATC---CCCCAGGACATCCCCGGGCATCTCCCCAGT-----------------------CCCCCGTCCCAGC---------GCTGCACGGGC-TGCCGGGAACGCACCCCAGACCCGGAGCC----------------GCGGTCCGCGG------------GGGGCC-----------------------------------------------------CTGTGCCTTCCTGGCTCCT-----CCGGGTCCTGCGGGGGACTGGACGGGCCGAGCGCCCACCTCC-CGGGC------- a score=16548.0 s hg17.chr17_random 897370 139 + 2618010 GGAAGCCTGGCAGC----------TCCGCT----------AACTCCAACATGCCTCATTTG------ACAGCAAATTCGGCGGGAGATCAGCCGAAAGAGCAAGTGGGTGGATATGCTGGGAGACTGGGAGAAATACAAAAGCAGCAGAAAGGTAACGTGTGGAG s panTro1.chr19_random 41331488 139 + 57627672 GGAAGCCTGGCAGC----------TCCGCT----------AACTCCAACATGCCTCATTTG------ACAGCAAATTCGGCGGGAGATCAGCCGAAAGAGCAAGTGGGTGAAAATGCTGGGAGAGTGGGACACCTACAAAAACAGCAGGAAGGTAATGTGTGGAG s canFam1.chr37 3105123 132 + 33897405 TGGAGCCT--CACC----------TGCG-------------GCCCCCGCTTGTCCTCTTC--------CAGAAACTCCACCAGGAGACCCGGCGCGTGGACAAATGTATAAAAATGCTCAAGCGATGGGACCACTACCTCCCCAGCGAGAAGGTGGGGCGCTGGG s fr1.chrUn 343015342 162 - 349519338 TGAAGATTCTAAGCCGGTCTATATTTCGCTCATGCTGGGAAACATCTGAACGTCTCTCTCTTCCTTCTCAGCAAAAGCAGCAGGACTTGAAGCGAGTGGAGAAATGGCTCAAGATGGTGAAGAACTGGGACAAGTACAGGAACAGTGAAAAGGTA---TGTGAAG a score=55222.0 s hg17.chr17_random 897509 540 + 2618010 GGAGGAAGCACTCTCTGCAGAGACAGGGGACAGGCACCCATGG---CTGTGGCCTGGCACCATCAGCCTCTCAGAGGGTGGGCGGCACACTGTCCTCGCCCAGAGGACTGCAGGCCTGGTCGCCAGATTTCCTGCCTATTCGTGCAAGCGTCACCTTGCAGGGAGGGAATCTGAATCTAGGGCTGGGACTACCCGGAGCTCAAGGCTAGGGATGCCCTGGGGACCTGAAGGAAGGAAAAGGTTCAGATCAGAGTTTCGACTCTGAGTGTCCATCCACTCTTTCAGTCCTGGGAAGGGAGACCCTGTCCCAGCTTGATCTCACCTCTACTGAGGAATCATGGGGCCAAAACCGACAATTTCCAGAATCCCCGGGCT--CTGGTCCTCACTGGGGTCACCCCGTGGCCTGTGACACCAGATCG--TTTTCTGCCCACAGCT------CATAG-ATCGAGCGTACAAGGGAATGCCCATGAACATCCGGGGCCCGATGTGGTCAGTCCTCCTGAACATTGAGGAAATGAAGTTGAAAAACCCCGGAAGATACCAGGT s panTro1.chr19_random 41331627 540 + 57627672 GGAGGAAGCACTCTCTGCAGAGACAGGGGACAGGCACCCATGG---CTGTGGCCTGGCACCGTCAGCCTCTCAGAGGGTGGGTGGCACACTGTCCTCGCCCAGAGGACTGCAGGCCTGGTCGCCAGATTTCCTGCCTATTTGTGCAAGCGTCACCTTGCTGGGAGGGAATCTGAATCTAGGGCTGGGACCACCCGGAGCTCAAGGCTAGGGATGCCCTGGTGACCTGAAGGAAGGAAAAGGTTCAGATCAGAGTTTCAACTCTGAGTGTCCATCCACTCTTTCAGTCCTGGGAAGGGAGACCCTGTCCCAGCTTGATCTCACCTCTACTGAGGAATCATGGGGCCAAAACCGACAATTTCCAGAATCCCCGGGCT--CTGGTCCTCACTGGGGTCACCCCGTGGCCTGTGACACCAGATTG--TTTTCTGCCCACAGCT------CATAG-ATCGAGCGTACCAGGGAATTCCCATGAACATCCGGGGCCCGATGTGGTCAGTCCTCCTGAACATTGAGGAAATGAAGTTGAAAAACCCCGGAAGATACCAGGT s canFam1.chr37 3105255 437 + 33897405 --------------------------------TGCCCCCAAGGGCTCTCCGTCCTGAC---------------GGGGCTGGGGGGC----------CGCCCTCAGT-------------------GTCCTCCTGCCCCGTCCTCAGGGGAGCCCCCTGCCTGGGGAGAGTCTG------------------CTGGGAGCCCGAGCCTCCCCAGGCCCCGGGACGGTGGTGGGGG----AGCGTCAGGTCGGGGCTACGGTCC-----------CTGCTCC-----TCGTGGGGGACGGGGCCCAGCTCCAGGGAGACCCAGCCTCTCCGCAGACACCCTGGAGCTGAAGCCGGAACCTTCTAGATGCCTCGCGCTCACTGGGCTCCAA-GGGGCCGCCCTG-GGCCCCTCTCACCAGCCCTGCCTTCCTCCCTGCAGCTGCGGCGCACCGCGCCGGGTCTACAAGGGGGTCCGCCCCAG-GTGCGGGGACAGGTGTGGCTGCGATTGCTGAACGTCGACCAGGTTAAGGCCGGGAATGCCGGGAAATACCAGGT a score=10267.0 s hg17.chr17_random 898049 113 + 2618010 ACGCTCAGCCAGAGCACAACAAACAGGACAGGCCGTGTC-GGGGCCCAGGTCTCCAGCTGGAGGGAACGTCAAGACCACCCTGGGGAGCTGGGGGTGAAGGTCAGATGAACACC s panTro1.chr19_random 41332167 114 + 57627672 ACGCTCAGCCAGAGGACAACAAACAGGACAGGCCGTGTCAGGGGCCCAGGTCTCCAGCTGGAGGGAACGTCAAGACCACCCTGGGGAGCTGGGGGTGAAGGTCAGATGAACACC a score=17371.0 s hg17.chr17_random 898162 164 + 2618010 CTGGGCACAGATGGTGACACAGTCACCACAGACAAACTCAGCTCTGGTGACCCTCCCTGGCTTCAGTAACAAGCCAAAATGCAGCTTTCTGCAGAAGGAAACCTTC---------CTTCTGTCCTTCCTTCCCGAAGTGCTGACTGTGGGCTGACTGCCACTGGGGGCAGGGA s panTro1.chr19_random 41332281 164 + 57627672 CTGGGCACAGATGGTGACACAGTCACCACAGACAAACTCAGCTCTGGTGACCCTCCCTGGCTTCAGTAACAAGCCAAAATGCAGCTTTCTGCAGAAGGAAACCTTC---------CTTCTGTCCTTCCTTCCCGAAGTGCTGACTGTGGGCTGACTGCCACTGGGGGCAGGGA s canFam1.chr37 3105829 153 + 33897405 CTGGGCACAGGCCCTCACGCAGGCCCCGCCGGCACGGTGGGCACTCCCGCCGTCCCCAGCCTCCCAGGGGAAG----GAAGGAGGTTCCTGC---AGGACACATTCCCATGGTGGCCCCTGGGCTCCCTGCCCAGGACGGCAGCT----GCTGAC--------AGGTCAGGG- a score=532.0 s hg17.chr17_random 898326 21 + 2618010 GTCTTCCATCTGT---TCTGAGAC s panTro1.chr19_random 41332445 21 + 57627672 GTCTTCCATCTGT---TCTGAGAC s canFam1.chr37 3105982 16 + 33897405 --------TCTGTGTCCCTGACGC s fr1.chrUn 343015915 20 - 349519338 GTTTTTGATATTT---TCAGGCC- a score=-1595.0 s hg17.chr17_random 898347 3 + 2618010 TGC- s panTro1.chr19_random 41332466 3 + 57627672 TGC- s mm5.chr2 6368716 3 + 181686250 TGT- s canFam1.chr37 3105998 3 + 33897405 CGG- s fr1.chrUn 343015935 3 - 349519338 -ATC a score=62723.0 s hg17.chr17_random 898350 141 + 2618010 TTCCTCCTCTTGGCCCTGCCCTACAGATCATGAAGGAGAAGG---GCAAGAGG----TCATCTGAGCACATCCAGCGCATCGACCGGGACATAAGCGGGACATTAAGGAAGCATATGTT-CTTCAGGGATCGATACGGAACCAAGTAAG s panTro1.chr19_random 41332469 142 + 57627672 TTCCTCCTCTTGGCCCTGCCCTACAGATCATGAAGGAGAAGG---GCAAGAGG----TCATCTGAACACATCCAGCAGATGGACCTGGACATAAGCGGGACATTAAGGAGGCATATATTCCTTCAGGGATCGATACGGAACCAAGTAAG s mm5.chr2 6368719 141 + 181686250 TTTCTTCCTTTCTCTTTCTTCTTCAGA-AATTAAAACACAGA---GCACGGGGTTGTTCACCTG---ATATCAGACAAATAGACCTTGACGTGAACCGCACATTCAGGGACCATATTAT-GTTTAGAGACAGATACGGTGTTAAGTAAG s rn3.chr17 14141372 137 - 97307196 TTCTTCCTCT----CTTTTTCTTCAGA-AATTAAAGCACAGA---GCACGGGGTTGTTCGCCTG---ATATCAGACAAATAGACCTTGACGTGAACCGCACATTCAGGGACCATATCAT-GTTTAGAGACAGATATGGTGTCAAGTAAG s canFam1.chr37 3106001 141 + 33897405 CTCCTCCTCCCGGGGTCTCCCCGCAGGAAATGAAGGAGGCGG---CCCTGGTC----TCCTCCCGGGACATCATGCAGATCGACCTGGACGTCAACCGCACATTCCGCAGTCACACCAT-GTTCTGGGACCGCTACGGGGTCAGGTGAG s fr1.chrUn 343015938 141 - 349519338 ACTCTGTCTTTTTCCTTGTCTTCCAGAAAATGAAGCAGCAGGCTCGCACCTTC----TCAACAG---AGATAAAACAGATAGACTTGGACGTCAACCGAACCTTCAGGAACCACATCAT-GTTCAGGGAGCGGTTTGGAGTAAAGTGAG a score=0.0 s hg17.chr17_random 898491 2 + 2618010 CC a score=30.0 s hg17.chr17_random 898491 2 + 2618010 CC s panTro1.chr19_random 41332611 2 + 57627672 TC s canFam1.chr37 3106142 2 + 33897405 GC a score=751.0 s hg17.chr17_random 898493 20 + 2618010 TAC-GGGAGCCACAGGGTCCC s panTro1.chr19_random 41332613 21 + 57627672 TATGGGGAGCCACAGGGTCCC s canFam1.chr37 3106144 20 + 33897405 TGC-TGGGCCAGTGGGGTTCA s fr1.chrUn 343016079 20 - 349519338 TGC-AGAAATCAGCGTATCGA a score=1746.0 s hg17.chr17_random 898513 3 + 2618010 AGC s panTro1.chr19_random 41332634 3 + 57627672 AGC s rn3.chr1 201532392 3 + 268121971 AGC s fr1.chrUn 343016099 3 - 349519338 AGC a score=291.0 s hg17.chr17_random 898513 3 + 2618010 AGC s fr1.chrUn 343016099 3 - 349519338 AGC a score=388.0 s hg17.chr17_random 898516 6 + 2618010 AGAGAT s panTro1.chr19_random 41332637 6 + 57627672 AGAGAT s rn3.chr1 201532395 5 + 268121971 AAAG-T a score=0.0 s hg17.chr17_random 898516 6 + 2618010 AGAGAT a score=8423.0 s hg17.chr17_random 898522 65 + 2618010 GGGGTGAATG---AGAGGGATGGGGGCTTCCCCGGAGCAGAA-GCCAGGGTCACCCA--------GGAGGGATGACA s panTro1.chr19_random 41332643 65 + 57627672 GGGGTGAATG---AGAGGGATGGGGGCTTCCCCGGAGCAGAA-GCCAGGGTCACCCA--------GGAGGGATGACA s rn3.chr1 201532400 64 + 268121971 GAAAGGAATGTCAGAAGGGATGGGAG----TCCTGAGCAAAATGGAGGGGTCCAGAA--------GGAGGGGTGAT- s canFam1.chr37 3106164 72 + 33897405 GGGGCCCAGG---GGAGGCCCGGGGACTTCCGTGCAGGGGAC--ACGGGGTCTCTGAGGCCGGGGGGAGCGATGACA a score=23130.0 s hg17.chr17_random 898587 181 + 2618010 CAGCTGCCAAGAGCTCTCCCGGCCCAGGGAGCAGCCGGCACCATGAACCGAGCACCTCCCTGGTTCCAAGCCCTGGGCCAGACTGGAACATGTGGGGCCAGAACCCAGGAGGATCCTGAGGAGATGGAAGGCAGCAAACAAAATCATGCACAATGGTGAAGGGTGCTCTCCCTGACCCATG s panTro1.chr19_random 41332708 181 + 57627672 CAGCTGCCAAGAGCTCTCCCGGCCCAGGGAGCAGCCGGCACCATGAACCGAGCACCTCCCTGGTTCCAAGCCCTGGGCCAGACTGGAACATGTGGGGCCAGAACCCAGGAGGATCCTGAGGAGATGGAAGGCAGCAAACAAAATCATGCACAATGGTGAAAGGTGCTCTCCCTGACCCATG s rn3.chr1 201532464 162 + 268121971 --GCTGCCGAAGGGCCTTTCCTTATAGAAAATAGCC-ACAGCCTGTGCTGGTTA-CTCCTAGGCATCAAGTCCT-----------AAAAACGAGGGGCTAGCACCCAGGTGGCAGCCAAGGAGAATGATATTGGCAAAC-AAATGACACACA---GTGAGAAGCACTCTCTGTAACTTACG a score=14981.0 s hg17.chr17_random 898768 162 + 2618010 GGGACCCATGGTAGGACCCACGGGAGGGTGGCAGGATAGAGGGCCCATGAGCCCCCCCCAGGCAACAGtgacagcaccaaatgctgggagaattaggggtcctggaaactctcatccaggtccgctgggaacatgacatggcacagccacgttggcagccag s panTro1.chr19_random 41332889 161 + 57627672 GGGACCCATGGTAGGACCCACGGGAGGGTGGCAGGATAGAGGGCCCATGAG-CCCCCCCAGGCAACAGtgacagcaccaaatgctgggagaattaggggtcctggaaactctcatccaggtctgctgggaacatgacatggcacagccacgttggcagccag a score=59082.0 s hg17.chr17_random 898930 543 + 2618010 ttgggcagtggctcacaaagctcgatggacttgaaccacacatccccaaagtgtcacagatattgaacccactgatttgcaaactgacatccacatgaaaccagcatgccaggttcactgcttgactcctcgtcactcacacacggagccttcggggacggccttcaacacggggatggggagagcaaggctggtcctcccttcaaacggaa---gacccagtgagaaaagggaacgagccggtgatgcccgcacgaacgtgggtggatcctagatgcattttgctgagggacagaagccagacccaataagctaccacagtaggattcccattcctaggccattctggaaaaggccaaacca---cagggactgagaagcagtctgggtggccaggggctgacggatcggggagaggctggttgcataggGGCCACCCTGGAGACTTGGAGGATGAAGGAGTCGCCCCAGGAGGGGCTGGAGCGGTGGC-------CGGGAGACT----CTGCACATC---GGTTTGGAACCG--TGGAGGAACTGTACACCCACAGACTGAAC s panTro1.chr19_random 41333050 543 + 57627672 ttgggcagtggctcacaaagctcgatggacttgaaccacgcatccccgaagtgtcacagatattgaacccactgatttggaaactgacatccacatgaaacctgcatgccaggttcactgcttgactcctcgtcactcacacacggagccttcggggacggccttcaacacgggaatggggagagcaaggctggtcctcccttcaaacggaa---gacccagtgagaaaagggaacgagccagggatgcccgcacgaacgtgggtggatcctagatgcattttgctgagggacagaagccagacccaataagctaccacagtaggattcccattcctaggccattctggaaaaggccaaacca---cagggactgagaagcagtctgggtggccaggggctgacgcatcggggagaggctgggtgcataggGGCCACCCTGGAGACTTGGAGGATGAAGGAATCGCCCCAGGAGGGGCTGGAGCGGTGGC-------CGGGAGACT----CTGCACATT---GGTTTGGAACCG--TGGAGGAACTGTACACCCACAGACTGAAC s canFam1.chr37 3107326 493 + 33897405 TCGGGCGGCTCCTGGCAGTGCTGAAGGGGC-TGCACCCCATACCCCC-CCGTG-CTCAGATAGTGATCCCAGGAGTTCGCAGCCTG-TATCGGGGTCACACCTGCATGAC--GTTCCCTGCTCTCCTCACGGTGGCTCAGACCTGGAGCC--CCAAGATG--------CTCCGGGATGGGCGGGGCCGG---GGTCCCCCC----AACAGAGTCCAGCCCAGGGACACTTGGGAA-GGCCTGGGGGTGCACTCAGGGCCACGGATG--CCCCGGCTGCG--TGGGCTCGGGGCAGGGGCCACA------------------TGGGGCTGGTGTTCCTGGGACAC-------AGGGCCAGGCCAGGGCAGGGGAGGAGAGGCA-TCAGGGACTGCAAGGACCG--GGACAGGGGGAGCGCTGGCT------------CCCAGGGGGCGTGTAG---GGGGGTGCTGCTCCAGGGCTGGAGGGGGCGCTGGCGGTGCTGGGGGAGCCCGGAGCTGCACACCCCACGGCGGGAGCCGCATGGAGGCATCGGACACCC-CAGGGTGCAC a score=21638.0 s hg17.chr17_random 899473 237 + 2618010 TGGCGTGTGTGCAAACTGAAAAAAAAAAAAAAATCATTCAGAGTGAAAAGGATCAGGCAAGTCACTGTACAACTGGGCTATTTGCATGTCACAGATGTGGATTTTACTGAAACATTTCTTCAAGAGTCTCAGGCCCTGAAGAGCTCACTGCTTATCTGGTGAAACATCTGAACCTGAAATGGGATTTGCTGTTAGGCTTTGTAGACAAAGTGAAATTAACAA-CATCTGCACAAAACA s panTro1.chr19_random 41333593 238 + 57627672 TGGCGTGTGTGCAAACTGAAAAAAAAAAAAAAATCATTCAGAGTGAAAAGGATCAGGCGAGTCACTGTACAACTGGGCTATTTGCATGTCACAGATGTGGATTTTACTGAAACATTTCTTCAAGAGTCTCAGGCCCTGAAGAGCTCACTGCTTATCTGGTGAATCATCTGAACCTGAAATGGGATTTGCTGTTAGGCTTTGTAGACAAAGTGAAATTAACAAGCATCTGCACAAAACA a score=846.0 s hg17.chr17_random 899710 3 + 2618010 AAC s panTro1.chr19_random 41333831 3 + 57627672 AAC s fr1.chrUn 343017307 3 - 349519338 AAC a score=18582.0 s hg17.chr17_random 899713 81 + 2618010 ---CAAAGCCCCC--TTTCTCTGTTTCCTAGGCAGCGGGAACTACTCCACATCCTCCTGGCATATGAGGAGTATAACCCGGTGAGT s panTro1.chr19_random 41333834 81 + 57627672 ---CAAAGCCCCC--TTTCTCTGTTTCCTAGGCAGCGGGAACTACTCCACATCCTCCTGGCGTATGAGGAGTATAACCCGGTGAGT s canFam1.chr37 3107967 83 + 33897405 ---CAGAGCCCCCCGCTGTCCCCCCTCCTAGGCAGCGAGCCCTGTTCCAGGTGCTGTCTGCCTACTCCGTGTATGACACCGTGAGT s fr1.chrUn 343017310 81 - 349519338 CACCGGTGTTTCT--CTTCCCTCT---CCAGGCAGCAGGCTCTGTTTCACGTACTGGCAGCATATTCGGTCTACAACACGGTGAGT a score=1269.0 s hg17.chr17_random 899794 7 + 2618010 ATTCCCG s panTro1.chr19_random 41333915 7 + 57627672 ATTCCCG s canFam1.chr37 3108050 7 + 33897405 GTCCCTG a score=31198.0 s hg17.chr17_random 899801 331 + 2618010 GCAGTGAGGTTCCCGGGCCATATTTCCATATTGACAGGAGTGGGTGTCTGGTGGGGGTGTCGTTGCTTCTTTTAAAGTTAGTATTTGTGACCCACCAGGATATAGGAGGTAGGATGTCAGCTCACCGCTGGCATAAACCTCCAAGGAAGGGGGTGGTCTCAAGGGGTCAAGCTGAGACACAAAGGAGTCAGGGCCCGGACTCCTGGTGTCACCTGGGCCTGACCACCACTTCTCAGAACAAGAAATGACGCCCTCCTCCTGGGGCTGCCCCAAAGCCCAGGAGCTTGGCAGCATCGCACACAGGATGGTGCTATCAGCAGACATTTTGGAC s panTro1.chr19_random 41333922 331 + 57627672 GCAGTGAGGTTCCCGGGCCATATTTCCATATTCACAGGAGTGGGTGTCTGGTGGGGGTGTCGTTGCTTCTTTTAAAGTTAGTATTTGTGACCCACCAGGATATAGGAGGTAGGATGTCAGCTCACCGCTGGCATAAACCTCCAAGGAAGGGGGTGGTCTCAAGGGGTCAAGCTGATACACAAAGGAGTCAGGGCCTGGACTCCTGGTGTCACCTGGGCCTGACCACCACTTCTCAGAACAAGAAATGACGCCCTCCTCCTGGGGCTGCCCCAAAGCCCAGGAGCTTGGCAGCATCGCACACAGGATGGTGCTATCAGCAGACATTTTGGAC a score=5801.0 s hg17.chr17_random 900132 53 + 2618010 AAGGTGCTGAAGTGCCTGATGGACTTGGCTCTTGTCA----TGAAATGAATGTGCAT s panTro1.chr19_random 41334253 53 + 57627672 AAGGTGCTGAAGTGCCCGATGGACTTGGCTCTTGTCA----TGAAATGAATGTGCAT s fr1.chrUn 245531056 52 - 349519338 AAGGAGC-GAAATACATTATTGACCTG----CTGTCAAACTTGACCTATATGTTTAC a score=100.0 s hg17.chr17_random 900185 1 + 2618010 C s fr1.chrUn 245531108 1 - 349519338 C a score=100.0 s hg17.chr17_random 900185 1 + 2618010 C s panTro1.chr19 47441592 1 - 82489036 C a score=9922.0 s hg17.chr17_random 900186 52 + 2618010 --------CTGAGGAAGCCTCTTTTTCAGAGGAAGCCTCTCCTTCAGAGGAAGCCTCTCC s panTro1.chr19 47441593 52 - 82489036 --------CTGAGGAAGCCTCCTTTTCAGAGGAAGCCTCTCCTTCAGAGGAAGCCTCTCC s mm5.chr8 45239383 52 + 128688707 --------CTGAGGAAGCTCCCCTTGCAGAGGAAGCTCCCCCTGCTGAGGAAGCTCCCCC s fr1.chrUn 245531109 48 - 349519338 AAGTGACACTGATTGC-TCTCTGTTTCGGCAGA-----------CAGCAGGCGCTCTTCC a score=3741.0 s hg17.chr17_random 900238 32 + 2618010 -AGTCACCTCTGCCCTCTCCAATGACA------TGAGTC s panTro1.chr19 47441645 32 - 82489036 -AGTCACCTCTGCTCTCTCCAATGACA------TGAGTC s fr1.chrUn 245531157 39 - 349519338 ACGTCCTCACGGCCTACTCCATCTACAACACGGTGAGTT a score=6016.0 s hg17.chr17_random 900270 31 + 2618010 --------CTCCCAGGTGACCTCAGCCCTCCCAGGTGAT s panTro1.chr19 47441677 31 - 82489036 --------CTCCCAGGTGACCTCAGCCCTCCCAGGTGAT s rn3.chr1 201533837 31 + 268121971 --------CCCCCAGGAGACCTCAGCCATCTTGGGTGAT s fr1.chrUn 245531196 39 - 349519338 CCTCTGCCCGGTCGGGGTGCAGCATCTGTCTGAGGGTCT a score=471.0 s hg17.chr17_random 900301 2 + 2618010 GT s panTro1.chr19 47441708 2 - 82489036 GT s rn3.chr1 201533868 2 + 268121971 CT s fr1.chrUn 343019001 2 - 349519338 GT a score=3327.0 s hg17.chr17_random 900303 14 + 2618010 CCTTCCATGGTGAC s panTro1.chr19 47441710 14 - 82489036 CCTTCCATGGTGAC s rn3.chr1 201533870 14 + 268121971 CCTCCCATAATGAT s canFam1.chr37 3108774 13 + 33897405 CCCTTCGTGGGGC- s fr1.chrUn 343019003 14 - 349519338 TCTTCTCCGGTGTT a score=1386.0 s hg17.chr17_random 900317 2 + 2618010 TC s panTro1.chr19 47441724 2 - 82489036 TC s mm5.chr2 6372100 2 + 181686250 TC s rn3.chr1 201533884 2 + 268121971 TT s canFam1.chr37 3108787 2 + 33897405 TC a score=108955.0 s hg17.chr17_random 900319 136 + 2618010 TGGCTCTTG--CAGGAGGTGGGCTACTGCAGGGACCTGAGCCACATCGCCGCCTTGTTCCTCCTCTATTTTCCTGAGGAGGATGCATTCTGGGCACTGGTGCAGCTGCTGGCCAGTGAGAGGCACTCCCTGCAGGGTA s panTro1.chr19 47441726 136 - 82489036 TGGCTCTTG--CAGGAGGTGGGCTACTGCAGGGACCTGAGCTACATCACCGCCTTGTTCCTCCTTTATCTTCCTGAGGAGGATGCATTCTGGGCACTGGTGCAGCTGCTGGCCAGTGAGAGGCACTCCCTGCAGGGTA s mm5.chr2 6372102 136 + 181686250 TCCCTTTCT--TAGGAAGTCGGGTACTGCCAAGGGATGAGTCAGATCACGGCCTTGCTCCTCATGTACATGAACGAGGAAGACGCCTTCTGGGCCCTGGTCAAGCTCTTCTCGGGCCCCAAGCACGCAATGCACGGTA s rn3.chr1 201533886 135 + 268121971 TGATTCCTG--AAAGCAG-AAGCCACTGCCTAGGCATGGGCCAGGTTACTTCTGTCCTGACAATGGTCCTCAATAAGGAAGATGCTATTTGGGTACTGTTCCAGTAGCCGATCAATAAGCAGCACACTATCCAAGGTA s canFam1.chr37 3108789 130 + 33897405 TGGCTCTTG--CAGGAGGTGGGCTACTGCCAGGGCACGAGCGAGATCGCGGCCA---TCCTCATGTTCCTGCCCGAGGAGGACGCCTTCTGGGCGCTGGCCCAGCTGATGACCGAC---AGGCACGCCATGCACGGTA s fr1.chrUn 343019017 132 - 349519338 ----TTCAC--CAGGAGGTGAGCTATTGCCAGGGGATGAGTCAGATCGCCGCCATCTTGCTCATGTACCTGAACGAGGAAGATGCCTTCTGGGCGCTGTCGCAGCTCCTCACCAACAGCAAGCACGCCATGCACGGTA s danRer1.chr25 13898285 138 + 17189730 TGGTTTTTGTATAGGAAGTGAGCTACTGTCAGGGGATGAGCCAAATTGCTGCCATTCTGCTTATGTATATGAATGAGGAGGATGCATTCTGGGCCTTATCACAGCTACTGACCAATCAGAAACATGCCATGCATGGTA a score=1910.0 s hg17.chr17_random 900455 2 + 2618010 AG s panTro1.chr19 47441862 2 - 82489036 AG s mm5.chr2 6372238 2 + 181686250 AG s rn3.chr1 201534021 2 + 268121971 AG s danRer1.chr25 13898423 2 + 17189730 AG a score=191.0 s hg17.chr17_random 900455 2 + 2618010 AG s danRer1.chr25 13898423 2 + 17189730 AG a score=931.0 s hg17.chr17_random 900457 5 + 2618010 TGAAC s panTro1.chr19 47441864 5 - 82489036 TGAAC s mm5.chr2 6372240 5 + 181686250 AAAGC s rn3.chr1 201534023 5 + 268121971 TAGAC a score=0.0 s hg17.chr17_random 900457 14 + 2618010 TGAACAGCTGCCCC a score=1284.0 s hg17.chr17_random 900462 9 + 2618010 AGCTGCCCC s panTro1.chr19 47441869 9 - 82489036 AGCTGCCCC s rn3.chr1 201534028 9 + 268121971 AGCCTCTCA a score=11430.0 s hg17.chr17_random 900471 191 + 2618010 GGGGACCTCCTGCAGCCAGACCTGGGGATGGCCACCCTGGCCGGGTGATCACAGCTTTCAGCCAAGGCACCCTCCTTGTGTCGCCAGCTTGTTGGGAGACTTTAGGATGTCT-CTGCT--GAGGGTCCCACAGGAGTCCACGGCTGACCCCCAAAGCCCAAATCAGACGCCTCTCATC-CCCATCAGCAGAGGGC s panTro1.chr19 47441878 192 - 82489036 AGGGACCTCCTGCAGCCAGACCTGGGGATGGCCACCCTGGCCAGGTGATCACAGCTTTCAGCCAAGGCACCCTCCTTGTGTCGCCAGCTTGTTGGGAGACTTTAGGATGTCT-CTGCT--GAGGGTCCCACAGGAGTCCACGGCTGACCCCCAAAGCCCAAATCAGACGCCTCTCATCACGCATCAGCAGAGGGC s rn3.chr1 201534037 149 + 268121971 CGGCACAAAAT--AGCTAGGCTGGGTGACAGCCA-----GCTAACTAGTGACAATTT------ATAGCACCTTTCCTTC--------CCTGTTCTGAACCACTGGACTGTCTGCTGTA--GATGGTCTCGGGAATGTCAAAGGAT----------------------CCCCTTGTGTC-CCCATCAGCAGAGAAC s canFam1.chr37 3108919 116 + 33897405 -GGGGCC------CGCCGGGCCACCGGGTGG---------------GAGGGGAGCTC------AGGAGGGCCTCCCTGC------------------------AGGCTGCTG-CTGCACCGGGGGGCAGGCGGGA-----------ACCCCCCCAGCC---------CGCCCC------CCCACGGGCCAAGGGC a score=0.0 s hg17.chr17_random 900662 2 + 2618010 AT a score=182.0 s hg17.chr17_random 900662 2 + 2618010 AT s panTro1.chr19 47442070 2 - 82489036 AT a score=2754.0 s hg17.chr17_random 900664 21 + 2618010 CTCATCCTCCCCGTGGCCACC s panTro1.chr19 47442072 21 - 82489036 CTCATCCTCCCTGTGGCCACC s canFam1.chr37 3109035 17 + 33897405 CCCACCTCCCCAGTGGC---- a score=43452.0 s hg17.chr17_random 900685 455 + 2618010 CTCTGTGTCCTGGAGCCACGCCCTCCGGCTCTGATTCTGTGCAGCTGACTCTCCCCTCCCTGAGAGTCCTCCTGCCCTCCA---------------GCTGCCCGGGCTCCTGCTGCCATCGGTGCCCACGAATGGGCCGACCAAGCCCAGGTGGCAGCATCTCCCCATCCCCTGTTCCCCTGGCCCGAC-CCCACTACCAGGAGATGACCGGG-AAGCCCAGCGCCCACCCAGTTCCGGCCACCCTGTCGTGGCCTGAAAGTCAGGCTTGCCCTTTTTGCACC--CTGGCCCAGGAGGCCTCCAGGGGAACCTCCAGCCAGGCTCCAGGGAATGTTCCCGCC-CCACCTCCCCAGGGTAAAGGCCGCATGTTGGGGTCACCAGATGGGAGGGTGGGAGTAGCCTTGGGGTTTGGGGGCCTCTCCAGCTGCCCAGCTCTTGCAGCTGATGGCTCCACATCTTGGGGGAAGGCTCTG s panTro1.chr19_random 10825400 451 - 57627672 CTCTGTGTCCTGGAGCCACACCCTCCGGCTCTGATTCTGTGCAGCTGACTCTCCCCTCCCTGAGGGTCCTCCTGCCCTCCA---------------GCTGCCTGGGCTCCTGCTGCCCTTGGTGCCCACAAATGGGCTGACCAAGCCCAGATGGCAGCATCTCACCATCCCGTGT-CCCCTGGCCCGAC-CCCACTTCCAGGAGATGACCAGG-AAGCCCAGCACCCACCCTGTTCTGGCCGCTCTGTTGTGGCCTCAAAGTCAGGCTTGCCCTTTT-GCACC--CTGGCCCAGGAGGCTTCCAGGGGAACCTCCAGCCAGGCTCCAGGGGATGTTCCTGTC-CCACCTCCCCAGGGCAAAGGCCGCATGGTAGGGTCACCAGATGGGAGGGCGGGAG--GCCTTGGGGTTTGGGGGCCTCTGCAGCTGCCCAGCTCTTTCAGCTGATGGCTCCACACCTTGGGGGAAGGCTCTG s canFam1.chr37 3109052 351 + 33897405 CTTGGGGTCCCGGAGCCACGGCCGCCCGCCCC-ACCGTCTGCAGGCGGGGCTCACACTCCCGCTGCTCCCCCAGCCTCCCACTCGGCTGCCTGCTTGCCCCCCAGGCCCCCCCTGCCA-----GCCC----ATGGCCACACAGGGCCCAGGGGGCAGCGTCTCCCCCTCCCGGGGGCCCCCAGCCTCACTCCCAAGCCCCACAGAGGGCCGTGCACGCCCATCACCCTCCC-----------------TGTGGCCT----------------------GCACCCACTGCCCCTCGGGGCT----GGGGACCCGCC-----------------TGTCCCCGCAGCGGCCCCTGCAGGAGAGAGGGTGCTGGGT--------CAGCTGG-------------GCCTGG-------------TCCTCAGCC-CCCAGC-----------------CCACGCCCCGCGGG--GTCTCTG a score=0.0 s hg17.chr17_random 901140 9 + 2618010 ATTTCATGA a score=182.0 s hg17.chr17_random 901140 2 + 2618010 AT s panTro1.chr19_random 10825851 2 - 57627672 AT a score=655.0 s hg17.chr17_random 901142 7 + 2618010 TTCATGA s panTro1.chr19 47442400 7 - 82489036 TTCATGA a score=74167.0 s hg17.chr17_random 901149 874 + 2618010 TGGGCTGGGGGCTTCTCAGGATTT-----------------------------------------------------------------------CACAGCCC----------AAATGGCGGGACCGTCCAGGGGCTCCAAGACCAACAGGAGCATGTGGTAGCCACGTCACAATCCAAGACCATGGGGCATCAGGTGAGTTTATGGTCCCCTCAGCTCTTCCCAGAGGCCCTGCCTCCCG--TGGGGCTGTAGGAG--------CAGGGGGGCTGGGGCCCCTCGTGGGGCTGGTGACTGGCTGAGTCCCAG-----CCAGGGCCTGACCTGGGACGTCGGGTTCTCCATGGGCTGGGAGTTGGTTTCCT-----------TTCCTGCCCTGGAGGAG-ACAGAGGCACAGGGA-----TGGGGGCCCAGCTCC----CACAGAGCAGGGCAAAGGGCAGTGTGTCCACCGGG-------AGTGTGGGAAGGTGACAGTGTTGTGGGGAGCTCTGGACACCGCCCAGTGTTCTGCACTAGGGGAAGGGTCTTCAGAGGCCCTGGAAGAGGGAG-----------GTTTTTAGG----GCAGCCCAGTGGCCTGAGCACCTCTGTTGCTTCCATCAGGACAAGAA--AGATCTATGTGGGCAGTGTTCCCCGTTAGGCTGCCTCATCCGGATATTGATTGACGGGGTAAGGAGGCATAGGGAGACCCTGGCTCAGGGACCTTCCTTGCCCTGCAGTGCCCTGCTTCCCCAGCCCGGGGGTCTGGCTCACTCCCAGCCCACAGGAGGCTCAGGC--------GGGTCCCCAAAG----GACACACAAGCAAAACCCTCT-------GCCCAAGGGGGGTCATCCCAGGGCAATGGCTGGGGCTCAGGCC----CAGCCTCA--------TGGGCAGACTGGGCCAGGACCCGACTTGAGAGGGCTCAGGGAAGCCTCAAGCCCTGGGCAAG-CCC----CTCTCTCCAGGAGCCACATCCCCACTCAAATGAGTGC----------CCCCCATG-----AGGAGCTT s panTro1.chr19 47442407 870 - 82489036 TGG--CGGGGGCTTCTCAGGATTT-----------------------------------------------------------------------CACAGCC------------AATGGGCAGACCGTCCAGAGGCTTCAAGACCCACAGGAGCATGTGGTAGCCACGTCACAGCCCAAGACCATGTGGCATCAGGTGAGTTTATG-TCCCCTCAGCTCTTCCCAGAGGCCCTGCCTCCCG--TGGGGCTGTAGGAG--------CAGGGGGGCTAGAGCCCCTCGTGGGGCTGTTGACTGGCTGAGTCCCAG-----CCAGGGCCTGACCTGGGACGTCGGGTTCTCCATGGGCTGGGAGTTGGTTTCCT-----------TTCCTGCCCTGGAGGAG-ACAGAGGCACAGGGA-----TGGGGGCCCAGCTCC----CGCAGAGCAGGGCAAAGGGCAGTGTGTCCACCGGG-------AGTGTGGGAAGGTGACAGTGTTGTGGGGAGCTCTGGACACCGCCCAGTGTTCTGCACTAGGGGAAGGGTCTTCAGAGGCCCTGGAAGAGGGAG-----------GTTTTTAGG----GCAGCCCAGTGGCCTGAGCACCTCTGTTGCTTCCATCAGGATAAGGA--AGGTCTATGTGGGCAGTATTCCTCGTTAGGCTGCCTCATCCGGATATTGATTGACGGGGTAAGGAGGCATAGGGAGACCCTGGCTCAGGGACCCTCCTTGCCCTGCAGTGCCCTGCTTCCCCAGCCCGGGGGTCTGGCTCACTCCCAGCCCACAGGAGGCTCAGGC--------AGGTCCCTAAAG----GACACACAAGCAAAACCCTCT-------GCCCAAGAGGGGTCATCCCAGGGCAATGGCTGGAGCTCAGGCC----CAGCCTCA--------TGGGCAGACTGGGCCAGAATCCGACTTGAGAGGGCTCAGGGAAGCCTCAAGCCCTGGGCAAGCCCC----CTCTCTCCAGGAGCCACATCCCCACTCAAATGAGTGC----------CCCCCATG-----AGGAGCTT s canFam1.chr37 3109403 950 + 33897405 TGAGGAGGAGGGTccccgggccccgcgcccccggccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCCCTGCCCTCTGGGAAGAGCGGGTCCAGTCAG-GGCTCCGAGGGCGGTGGGCACACGGGG-------GTCA---------------GGGCGTGGGGGGAG-------GCCC-------CTGCCCCGACACCCCCCATCCCGCCTGGTGCAGGAGGAGGCCCTGACCGTGGGGGCCTGGGGCCTTCTCAGGCTT---------CTTCGTCCCGGGCTTCCCGAAGCT---CCTCAGGTTCCAGGCTCATCACGAG---------GGCATCCTCCAAAGAGCTCTCCCCGACCTGAAGAAGCACATGGCGAGTGGGAGCTCCTGAGGCTCCGGCCCCGGGGCCCGGGGCA-GGCGGTGGGGGGCACGGCCCTCTGAGCTGCCCAGAGTTGG--GGTCACAATCCT-------CCTCTggg----gcccgggg---cgccctcggggctgggc-----ggggccgTG-----GGGAGCACGTCCACCTGGCTCCAGGTGCCGCGGCGTGG-GGCCTGAGCACCTCCTGCCCTTCCACCAGGACGAGGAGCAGATGTGCACAGG-AATCTACACCCCCAAGTGGTTTC-TCCAATGCTTCCTCAGCCGGGTGAGGCCCCCCCGGGACCCCCAGTCCC--GGACCTGCC-------------CCCTGC--CCCCAG--GGAGTGCCCAGCTCAGCCCCACCCTCCAGACGAGCCAGGCCCGACCCTGGGGCCCTGAGGCTGAGGCTCGCAGCCCAGCCCGTCCTGGAGAAGCCCAGAAGCCCTCGTCCTGGACGAGGTTCCGGGGGGCGGGCCGTCTCTGCCTCAGCTCCCCCGGGGGAGGCTGGGTCAGCCTGGGGTGTGGACGGGCCCTAGGGCCCATTGGGC----GGCCAA-CCTGGGGTCCTCTCGAGGCGTGGTGTC----GTCAAGTGTGGGCAGAGTCTGTGCCCCCAGGGGTGCAGGAGGTG a score=7697.0 s hg17.chr17_random 902023 106 + 2618010 CAAGACCTTGTCTGACCCAGCGTCCTGGAGGGCTCAGG-----CGACCCTCATGGG-GAAGGTCAC--------TGACTCTGGAGACT-----GAAGCC-CCAGTGTGCGCATCTCGAGCC---ACCAG s panTro1.chr19_random 10826738 106 - 57627672 CAAGACCTTTTCTGACTCAGCATTCTGGAGGGCTCAGG-----TGACCCTCATGGG-GAAGGTCAC--------TGACTCTGGAGACT-----GAAGCC-CCAGTGTGCGCAGCTCGAGCC---ACCAG s canFam1.chr37 3110353 122 + 33897405 ------CTGGCCGGGGTCGGAA-CCCGGAGCGGCCGGGAGCCCTGATCTCCCTGGGAGGAGGGCACGCACGGGGGGGCTGTGGGGCCTCGTCGGAGGCAGCCGGGGGGCAGATGGCAGGCCTAGCCTGG a score=4141.0 s hg17.chr17_random 902129 42 + 2618010 CCCCAGCCTGG------AAGGAC------CAGG----TTCTTTCACACCTGCTGTCCC s panTro1.chr19_random 10826844 42 - 57627672 CCCCAGCCTGG------AAGGGC------CAGG----TTCTCTCATACCTGCTGTCCC s canFam1.chr37 3110475 57 + 33897405 CCCCAGCCAAGCCCCCCCGGGGCCCTGCTCAGGCCGCTCCTCCCAC-CCCGCTGTCCC s danRer1.chr25 13903442 42 + 17189730 CTTTAGCCTGG-----TGATGAC------CTGT----TTCTGCTGT-GTTTCTGTTTT a score=0.0 s hg17.chr17_random 902171 1 + 2618010 C a score=300.0 s hg17.chr17_random 902171 1 + 2618010 C s panTro1.chr19_random 10826886 1 - 57627672 C s canFam1.chr37 3110532 1 + 33897405 C a score=45951.0 s hg17.chr17_random 902172 109 + 2618010 ACAGATCTCTCTCGGGCTCACCCTGCGCCTGTGGGACGTGTATCTGGTAGAAGGCGAACAGGCGTTGATGCCGATAACAAGAATCGCCTTTAAGGTTCAGCAGAGTAAG s panTro1.chr19_random 10826887 109 - 57627672 ACAGATCTCTCTCGGGCTCACCCTGCGCCTGTGGGACGTGTATTTGGTGGAAGGAGAACAGGTGTTGATGCCAATAACCAGCATTGCTCTTAAGGTTCAGCAGAGTAAG s canFam1.chr37 3110533 108 + 33897405 -TAGACCCCCTTCTCGCTCACCCTGAAGCTGTGGGATGCCTACGTACTCGATGGGGAGAGGGTGCTCACGGCCATGGCCTACACCATCCTCAAGGTGCACAGGAGTAAG s fr1.chrUn 343019733 109 - 349519338 ACAGACCCCGTTCACCCTGACCCTGCGTCTCTGGGACATCTACATATTGGACGGAGAGAAGACGCTGACTGCGATGGCTTACACGACCTTCAAGTTACACAAGAGTGAG s danRer1.chr25 13903484 109 + 17189730 ACAGACTCCCTTCACACTCACCTTACGTCTTTGGGATATCTACATATTAGAAGGAGAAAAGGTTCTGACAGCCATGGCTTATACTCTCCTCAAATTGCACAAAAGTAAG a score=3194.0 s hg17.chr17_random 902281 184 + 2618010 T----CTACGTGTGCCCAGCGGGGCCTGGGGA------------GCCCTGGGGTCAGACCCCGACTGGCCCGAG--------GGCAGCTTCCTCACACTGTCCTCATGATC----CGCTGTTCTGGCCCAGAGGGAGGTCTGGCCAGGTGGGCTGGGCAGGACACT--GTGACACTGAGCCCATCCCCCACATGACCCAGAT----GAAAGTCGAGAG s panTro1.chr19_random 10826996 184 - 57627672 T----CTACGTGTGCCCAGTGGGGCCTGGGGA------------GCCCTGCAGTCAGACCCCGACTGGCCCAAG--------GGCAGCTTCCTCACACTGTCCTCATGATC----CTCTGTTCTGGCCCAGAGGGAGGTCTGGCCAGGTGGGCGGGGCAGGGCACT--GTGACACCGAGCCCATCCCCCACATGACCCAGAT----GAAAGTCGAGAG s canFam1.chr37 3110641 135 + 33897405 TGAGCCCCTGGGAGTCCAGGTGTGCCAGGGG----------------CGGGGGGCAG----------------G--------GGCAG-----TGACCCTGTGCTC-TGAGCAGCACCCAGACCTGGGGCGGGGGGATGGCAGGGCAGGCGGGTGCAGCGGGGC-----------------------------TGCCTGAGAG----GAGCAGCG---- s fr1.chrUn 343019842 201 - 349519338 TG---CGGCGTCTG---AGCTGTGCCAGATGAAAACCAGATTCCGCCAAGGCGGCAGTCGCTGTGTGGATTAGGTCTCGCTCGGCTACTCGCTCA-GCTGCCTCC-TAACTGGATTGCTTACATAACACAAGTGGCTGGGTTGCCGTG-GAGAGGAGTGGAAAACTCACTTTCATTGGGCGCTTCCGC----TGGCCCAGACCACAGCACATTG---- a score=3026.0 s hg17.chr17_random 902465 35 + 2618010 TGTGGTGAGCACTTCCCTGTCCGGATCGCCCCCCA s panTro1.chr19_random 10827180 35 - 57627672 TGTGGTGAGCACTTCCCTGTCCAGATCACCCCCCA s canFam1.chr37 3110776 29 + 33897405 ---GGCAGGGGCCACCCCGGCCAGCGCACTGC--- a score=3976.0 s hg17.chr17_random 902500 23 + 2618010 GCCACAGT-CTCCTGTGTATATCT s panTro1.chr19_random 10827215 23 - 57627672 GCCACAGT-CTCCTGTGTACATCT s canFam1.chr37 3110805 23 + 33897405 -CCACGGCGCTCCTGGGCACAGCG s fr1.chrUn 343020064 23 - 349519338 GCTTCTGT-CTCCGCTGCGTGTTT a score=0.0 s hg17.chr17_random 902523 35 + 2618010 GGACACCTGGGGTGGCCACAAAAGGATCCGGCACC a score=1742.0 s hg17.chr17_random 902523 11 + 2618010 GGACACCTGGG s panTro1.chr19_random 10827238 11 - 57627672 GGATGCCTGGG s canFam1.chr37 3110828 11 + 33897405 GGGCCCCAGGG a score=2319.0 s hg17.chr17_random 902534 24 + 2618010 GTGGCCACAAAAGGATCCGGCACC s panTro1.chr19_random 10827249 24 - 57627672 GTGGCCACAAAAGGATCCGGCACC a score=0.0 s hg17.chr17_random 902534 24 + 2618010 GTGGCCACAAAAGGATCCGGCACC a score=2363.0 s hg17.chr17_random 902558 21 + 2618010 GCCCAGTAGGAGACTGAAGTG s panTro1.chr19_random 10827273 21 - 57627672 GCCCAGTGGGAGACTGAAGTG s fr1.chrUn 343020087 17 - 349519338 GTCCTGTAG----TCGAACTG a score=329.0 s hg17.chr17_random 902558 25 + 2618010 GCCCAGTAGGAGACTGAAGTGGCCA s fr1.chrUn 343020087 21 - 349519338 GTCCTGTAG----TCGAACTGCTCA a score=636.0 s hg17.chr17_random 902579 4 + 2618010 GCCA s panTro1.chr19_random 10827294 4 - 57627672 GCCA s rn3.chr2 189865092 4 + 258222147 GCAA s fr1.chrUn 343020104 4 - 349519338 CTCA a score=6674.0 s hg17.chr17_random 902583 108 + 2618010 CGGGATATGAGCTGTGACCATTCCCAGGTAACTCCCCTGGCCTGATATCCACCCTGTCCCTAGAGCGCCTCACGAAGACGTCCAGGTGTGGCCCGTGGGCACGTTTTT s panTro1.chr19_random 10827298 106 - 57627672 CAGGGTATGAGCTGTGACCATTCCCAGGGAACTCTCCTGGCCTGATATCGACCCTGTCCCTAGAGCGCCTCATGAAGACATCCAGGTGTGGCCTGTGGGCACG--TCT s rn3.chr2 189865096 108 + 258222147 CCAGATAAGTGCAGGGCCCATTCCCAGATGCTCCTCCCAGCCTTCCTTCCCTCTGGGCCCTAAGGCGTCTCTCGAATGCTTACTGGGGGAAGTTGTGGGCTTGCCTTT s canFam1.chr37 3110839 82 + 33897405 CGGGG--------------------------CCCTCTGGGTCTGACTCTCGCCCACCGCCCAGAGCGCCTCCTGAAGCTGCCCCTGGAAGGGCTCCGGGAGTTCCTCC s fr1.chrUn 343020108 90 - 349519338 -----CATTAAAAATGGCATT--------AATATTTTGTGTCTGTGCCGCGTCCTATC---AGAGCACCTGCAGAAACTTCAGCTGGAGGACCTGAGAGAGTTTCT-- a score=23579.0 s hg17.chr17_random 902691 160 + 2618010 GC--AACCGGTTCGTTGATACCTGGGCCAGGGATGAGGACACTGTGCTCAAGCATCTTAGGGCCTCTATGAAGAAACTAACAAGAAAGCAGGGGGACCTG---CCACCCCCAGGTGGGCTCCAGTGCCATGTCCCCTCCCATGTCACCCT-CTGGGGTAGTCAGTA s panTro1.chr19_random 10827404 162 - 57627672 GCAGAACCAATTCTTCGATACCTGGGCCATGAATGATGACACCGTGCTCAAGCATCTTAGGGCCTCTACGAAGAAACTAACAAGGAAGCAAGGGGACCTG---CCACCCCCAGGTGGGCTCCAGTGCCATGTCCCCTCCCATGTCAGCCT-CTGGGGCAGTCAGTA s canFam1.chr37 3110921 163 + 33897405 --AGGACTCTCTGGCCCAGCCCTGGGCCCTGGAGGACGAGGCGGTGCTCAGACACCTTCTGGCCTCCATGACCCAGCTCCGGAGGATGCGGTGCGACCTGCACCCCCCCCCAGGTGGGCT-CAGGGCCTTGGCCCCTCCCGACTCGGCCTGTTGGGGCTGCCCACA s fr1.chrUn 343020198 154 - 349519338 CCAGGAGCGGCTGGCCGTCTCTTTCTTCCTCCCTGACGACGTGGTGATCGAGCAGCTGCAGGCCGCCATGGCCGAGCTGCGCAGTAAGAAGCTGGCCCAA---CCTCCACCAGGTG----CTGACGCCTTTAGCTTTCCTGT----GCTT-CTGATCTCGTCGTTA a score=6621.0 s hg17.chr17_random 902851 50 + 2618010 GTAGGG-GAGTGCCCAGGACCCGCAACCCTACTACCTGGGCCTTCCTCTTC s panTro1.chr19_random 10827566 50 - 57627672 GTGGGC-GAGTGCCCCGGACCAGCAACCCTACTACCTGGGCCTTCCTCTTC s canFam1.chr37 3111084 51 + 33897405 GGGGACAGAGCCCCTGGGGCCACCATCCTCATCTCTGGGGCTCTCCTCTTC a score=63968.0 s hg17.chr17_random 902901 735 + 2618010 ACCTTTTCTTCCTCCTCTTCCTCCTGGACTCTAAGAAAGTACAGGAGGCCCACCGGTCCTCAGGGCAGGCGCTCAGTGCGTGTATACTGGACATGCTGTGCACGCAGGAGGGGGATGTGGGCAAGACCCTCCAACAAGCCCCCTCCCACTTTCCACGGTGTCTCCCTCTCCCCCTCGCAGGGCCCTCCAAGTTACTAGACGAGCCCAGACCCATTTGTGGGAGACCCCGCCCCTCCCTGCAAGCACCCACAGCCTCAGAGAGCAGCAGAGGCCCCTCACTCCTGCACGCTCCTCCAAGGTTGCCAGGACAAGAAGCCTGGAGCCAGGGAGACAAGGGAATC-CGTGTCCCTGACCCACAGAGCATTCAGGGAGA------------------GGGCCCAGAGCCAGAGCCAAGAGTTCAGCCAGAAGTGGGAACGGTCAGTCCTGGCATGGACTGGGCAGCCCAGGAGGGCAGAGGGTGACCCACGTCCGGGCCCAATCACCCACTGCGGAGACGGGTCCCCACGTGAGGTGACAAGGGGCTGGGTGACATCCAAGGCCCCTCCCACCTGAGTTCTGACTGGGGGCCGTATCCCAGGCCCAACAGCCCTGGGACGAAGGTGTGTGGCAGGAAGCCCCCAGCCAGTCTGAACCCTGGGGGCAGTCCCAGGAGCCACCCGCCATGCCACGACAGCTTCCCCACGCCAGGCAGCATGCACCCCTCCCTCTGGGATCAGCAGACTACAGGCGTGTCCT s panTro1.chr19_random 10827616 753 - 57627672 ACCTTTTCTTCCTTCTCTTCCTCCTGGACTCTAAGAAAGTACAGGAGGCTCACCGGTCCTCAGGGCAGGCGCTCAGTGCGTGTATACTGGATGTGTTGTGCACGCAGGAGGGGGATGTGGGCAAGACCCTCCAACAAGCCCCCTCCCACTTTCCACGGTGTCTCGCTCTCTCCCTCACAGGGCCCTCAAAGTTACTAGATGAG-CCAGACCCATTTGTGGGAGACCCCGCCCCTCCCTGCAAGCACCCACAGCCTCAGAGAGCAGCAGAGGCCCCTCACTCCTGCACGCTCCTCCAAGGTTGCCAGGACAACAAGCCTTGAGCAAGGGAGACAAGGGAATCGGGTGTCCCTGACCCACAGGGCATTCAGGGAGAGGGCACAGGCGGGACCCCGGGCCCAGAGCCAGAGCCAAGAATTCAGCCAGATGTGGGAACGGTCAGTCCTGGCATGGACTGGGCAGCCCAGGGGGGCAGAGGGTGACCCACGTCCGGGCCCAGTCACCCACTGCGGAGACAGGTCCCCATGTGAGGTGGCAAGGGGCTGGGTGACATCCAAGGCCCCTCCCACTTGAGTTCTGATGGGGGGCCATATCCCAGGCCCAACAGCCCTGGGACGAAGGTGTGTGGCAGGAAGCCCCCAGCCAGTCTGAACCCTGGGGGCAGTCCCAGGAGCCACCCACCATGCCCCAACGGCTTCCCCATGCCAGGCAGCACACACCCCTCCCTCTGGGATCAGCAGACTACAGGCGTGTCGT a score=32230.0 s hg17.chr17_random 903636 265 + 2618010 CGGTGTCAGGCCACGGGGGCCACACAGGGACCCCGAGGACTCC-GAGATGCAGGCAGGTGGGGCCCAGCCCGGAAAGGCCTGCGTGGGCTCACTGGAGATGCTGACCGCGTCTGTTTTCCTTTCAGCCAAACCC------------------------------GAGCAAGGGTCGTCGGCATCCAGGCCTGTGCCGGCTTCACGTGGCGGGAAGACCCTCTGCAAGGGGGACAGGCAGGCCCCTCCAGGCCCACCAGCCCGGTTCCCGCGGCCCATTTGGTCAGCTTCCCCGCCA s panTro1.chr19_random 10828369 266 - 57627672 CAGTGTCAGACCACAGGGGCCACACAGAGACCCCAAGGACTCCAGAGATGCAGGCAGGTGGGGCCCAGCCCGGAAAGGCCTGCATGGGCTCACTGGAGATGCTGACCACGTCTGTTTTCCTTTCAGCCAAACCC------------------------------GAGCAAGGGTCCTTGGCACCCAGGCCTGTGCCGGCTTCACATGGTGGGAAGACCCTCTGCAAGGGGTATAGGCAGGCCCCTCCAGGCCCACCAGCCCAGTTCCAGCGGTCCATTTGCTCAGCTTCCCCGCCA s canFam1.chr37 3111224 271 + 33897405 CAGGGCCAGGCCG-GGGGGCCACGCGGGAGCCATGAGGACCCCGGGGATGTA------------CCA--CTGGGAACACAC-----AGCCTGCTGGAGACGCTGACCCCATCTG-CCTCTTTCCAGCGGGACCTGAGGAGTTCCCCACGTGGCCCCTGGGCCTGGAGCGAGTGTCCCTGGCACCCGGGCCTCTCCTCCCTTCTCCAGCCTCTGAGCTACCACCCAGGGTGGAGGAGCAGGCCTCCCCAGGCCCAGCCACCCAACCTGAGCCGCCC----GGACCCCCTCCCAGCCA a score=16416.0 s hg17.chr17_random 903901 220 + 2618010 CGGGCACCTCGTTCTTCCACACCCTGTCCTGGTGGGGCTG-TCCGGGAAGACACCTACCCTG----------TGGGCACTCAGGGTGTGCCCAG----CCC---GGCCCTGGCTCAGGG---------AGGACCTCAGGGTTCCT---------GGAGATTCCTGCAG---TGGAACTCCATGCCCCGCCTCCCAACGGACCTGGACGTAGAGGGCCCTTGGTTCCGCCATTATGATTTCAGACAGAGCTGCTGGGTCC s panTro1.chr19_random 10828635 220 - 57627672 TGGGCACCTCGTTTTTCCACACCCTGTCCTGGTGGGGCTG-TCCGGGAAGACACGTACCCTA----------TGGGCACTCAGGGTGTGCCCAG----CCT---GTCCCTGGCTCAGGG---------AGGACCTCAGGGTTCCT---------GGAGATTCGTGGAG---TGGAAGTCGATGCCCCAGCTCCCAACGGACCTGGATATAGGGGGCCCTTGGTTCCCCCATTATGATTTTGAATGGAGCTGCTGGATCC s canFam1.chr5 32925952 239 - 92064832 -GGCCAGC------CTCAAGACT--------GAGATGCTGCTGCAGGAGGGAAGCTTCCCTGAGCCCATGGCTGTGCACC-----TGTGTCCAAGAACCCCAGGGGCTCCAGTTCTGAACCTCCTACCAGAAGCTCAGGACACCTCACTGGCCCGACTGCCCCCACAGCATTGGAATTCCCACCCCATCCTCCCGGTGAACCAGGAGGGTGCAGGCAGGTGGCCCCCGGACATGGACTTGAAACCAGAACACTGGGTCC a score=4533.0 s hg17.chr17_random 904121 49 + 2618010 GTGCCATATCCCAGGAGGACCAGCTGGCCCCCTGCTGGCAGGCTGAACA s panTro1.chr19_random 10828855 49 - 57627672 GTGCCATATCCCAGGAGGACCAGCTGGCCACCTGCTGGCAGGCTGAACA a score=23272.0 s hg17.chr17_random 904170 363 + 2618010 CCCTGCGGAGCGGGTGAGATCGGCTTTCGCTGCACC-------------------------------------------CAGCACTGATTCCGACCAGGGCACCCCCTTCAGAGCTAGGGAcgaacagcagtatgctcccacctcagggccttgcctctgcggcctccacttggaaagttctCAGTTCCCTCCAGGCTTCTAGAAGCATCTGGGCCAGGGCTCATGGCTGGATAATTTCCCTAGGCTTAACAACCCAAGCAAGCTTCGCGTCCTCGTTTTATTTTTGGTTAAACTTATGAAAATGTATTAAGA-------------------AAGAGTGCAGCTCGAGAGAGATTCAGAGATGGAACACACCAGACCCCAGATCACAAAGCCAACCATGCCCAGCCCCTCCCAGCACCCCCAGCC s panTro1.chr19 26116814 418 + 82489036 cactgCGAAGGGGCTGAGATCGGCTTTCACTGCACTGAGCCACAATATGGACATGGACTTGTGGGCCCTGCAGTGcacacagcattgcctctgagcaggacaccccattcacagctagggacaagcagcagtgcgctTCCACCTCGGGGCCTTGGCTCTGCCACCTCTATTTTGAATGTTCTCAGTTCCCTCCAGGCTTCTAGAAGCATCTGGGCCAGGGCTCATGGCTAGATAAGCACCCGAG-------ATCCCAAACAAGCTTCCCATCCTCGTTTTATTTTTTGTTAAACTTATGAAAATTTATTAAGATATGACTTACATCCCTGGTAAGTGCACAGCTCAAAAGACATTCAGAGATGGAACACACCAGCCCCCAGATCACAAAGCCAACCATGCCCAGCCCCTCCCAGCACCCCCAGCC a score=5421.0 s hg17.chr17_random 904533 108 + 2618010 CCACGACCATCGTTCTGAATTCTGACGACACCGTGAGCCTGCCTTTGTACTC--AACTC-TGGAA-GATAA-CACCTTC---TGTTTG-AATAAATGTT--CTGT--GAATGA-TTTAGATT s panTro1.chr19 32880183 121 - 82489036 CCACGACCATCGTTCTGAATTCTGACGACACCGTGAGCCTGCCTTTGTACTTTAAACTCATGGAAGGATAACCACCTTCACAt-tttgaaataaatgtttcctgttgaaatgattttagatt a score=19006.0 s hg17.chr17_random 904848 199 + 2618010 AGGGTCGTCGGCATCCAGGCCTGTGCCGGCTTCACGTGGCGGGAAGACCCTCTGCAAGGGGGACAGGCAGGCCCCTCCAGGCCCACCAGCCCGGTTCCCGCGGCCCATTTGGTCAGCTTCCCCGCCACGGGCACCTCGTTCTTCCACACCCTGTCCTGGTGGGGCTGTCCGGGAAGACACCTACCCTGTGGGCACTCAG s panTro1.chr19 47466388 199 + 82489036 AGGGTCGTCGGCATCCAGGCCTGTGCCGGCTTCACGTGGCGGGAAGACCCTCTGCAAGGGGGACAGGCAGGCCCCTCCAGGCCCACCAGCCCGGTTCCCGCAGCCCATGTGGTCAGCTTCCCCGCCACGGGCACCTCGTTCTTCCACACCCTGTCCTGGTGGGGCTGTCCGGGAAGACACCTACCCTGTGGGCACTCAG a score=10471.0 s hg17.chr17_random 905047 143 + 2618010 GGTGTGCCCAGCCCGGCCCTGGCTCAGGGAGGACCTCAGGGTTCCTGGAGATTCCTGCAGTGGAACTCCATGCCCCGCCTCCCAACGGACCTGGACGTAGAGGGCCCTTGGTTCCGCCATTATGATTTCAGACAGAGCTGCTG s panTro1.chr1 2502352 140 - 229575298 GGTGTGCCCAGCCTGGCCTTGGCTCAAGGAGGACCTCGGGGTTCCTGGAGGTACCTGCAGCGGAACTCCATGTCCCAACTCCCAATGGACTTGGATGTGGGGGGCCCTTGGTT---CCATAATAATTTCAAACAGAGCTGCTG a score=3669.0 s hg17.chr17_random 905198 48 + 2618010 CCATATCCCAGGAGGACCAGCTGGCCCCCTGCTGGCAGGCTGAACACC s panTro1.chr1 2503461 48 - 229575298 ccatttcccaggaggaccagctggccacctgctggcaggctaatcaca a score=101093.0 s hg17.chr17_random 905246 1251 + 2618010 CTGCGGAGCGGGTGAGATCGGCTTTCGC-------------------------------------------TGCACCCAGCACTGATTCCGACCAGGGCACCCCCTTCAGAGCTAGGGAcgaacagcagtatgctcccacctcagggccttgcctctgcggcctccacttggaaagttctCAGTTCCCTCCAGGCTTCTAGAAGCATCTGGGCCAGGGCTCATGGCTGGATAATTTCCCTAGGCTTAACAACCCAAGCAAGCTTCGCGTCCTCGTTTTATTTTTGGTTAAACTTATGAAAATGTATTAAGAAAGAGTGCAGCTCGAGAGAGATTCAGAGATGGAACACACCAGACCCCAGATCACAAAGCCAACCATGCCCAG-CCCCTCCCAGCACCCCCAGCCCCACGACCATCGTTCTGAATTCTGACGACACCGTGAGCCTGCCTTTGTACTTTAAACTCATGGAAGGATAACTACCTTCACGttttgaaataaatgtttcctgttgaaatgcttttagattttagacagaaatattgaaaaggcactatagtgtcctcctataccttccatccagctgcccctaataatgatgttttgcagtcccatggcacataagaaatttaggccgggtgtggtggctcacacctgtaatcccagcaatttgagaggtcgaggtgggaggttcaggttcacttgagtctagaagtctgagaccagcctgggaaacctaggtggacccggtctctagagaaaagtcaaagaaattagccaggcatggtggcgtgtgcctatagtcccacctagtcaggaggctgaggcaggaggattgctggagcccacgagttccaggaagcagtgagccatgattgcaccactgcactcccgcctgggtgacagagtgagacttcacctctt--aaaaaaatttgagaaatttaatgtgggtacaattctattaactaaataataatgtgaactattatctaaggttatgaaggctagaattatcccatttttgcctaacttctcgtacctgtcccaagatcccaccttggactcaccctctgccttcagctcatgtctcttcagcttcctccACATGGTCCAGCAAACACACACCTGGGCTGAATGGTAGAGCTGATTGCTCATACACAAAGGTAGACCGGTGGGCAGGGATTTTCAGACTTATAGAGTAAATGAGTTTTCCTTGGTGTTCTGGAGAGCACCGTTTGAGAAACACTTTGACAGTGAATCTAGGCCTCAAGATCCATCAGCTGCTCTAGCTTGAATTT s panTro1.chr19_random 10828904 1294 - 57627672 CTGCGGAGAGGGTGAGGTTGGCTTTCACTGCACTGAGCCACAATGTGGGCATGGACTTCCCGGCCCTGCAGTGCACCCAGCACTGATTCCGACCGGGATACCTCCTTTGCAGCTAGGGACGAGCAGCAGTGCGCTCCCACCTCAGGGCCTTGCCTCTGCCACCTCTACTTGGAAAGTTCTCGGTTCCCTCCAGGCTTCTAGAAGCATCTGGGCCAGGGCTCATGGCTGGATAATTTCCCGAGGTTTAATAATCCAAGCAGGCTTCGCATCCTTGTTTTATTTTTTGTTAAACTTATGAAAATTTATTAAGAAAGCGTGCAGCTTGAAAGACATGCACAGATGGAACACACCAGCCCCCACATCACAAAGCCAACCATGCCCAGCCCCCTCCCAGCACCCCCAGCCCCACGACCAGCGTTCTGAATTCTGACAACACCATGAGCCTACCTTTGTACTTTAAACTCATGGAAGGATAACCACCTTCATGttttgaaataaatgtttcctgttgaaatgattttaga---tatacagaaatattgtaaaggcactacagtgtcctcctacaccttccatccagctgcccctaataatgacgttttgtagtagcatggcccataagaaatttaggccgggtgtggtggctcacacctgtaatcccagcaatttgagaggtcgaggtgggaggttcaggttcacttgagtctagaagtctgagaccagcctgggaaacataggtggaccctgtctctagagaaaagtcaaagaaattagccaggcatggtggcatgtgcctatagtcccacctagtcaggaggctgaggcaggaggattgctggagcccatgagttccaagaagcagtgagccatgattgtaccactgcactccagcctgggtgacagagtgagacagtatctcttaaaaaaaaaattaagaaatgtaatgggagtacaatcctattaactaaataataatgtgaactattatctaaggttattaaggctataattgtcccattttcgcctaacttctcatacctgtcctaagatcccatctcggactcaccctctgccttcagctcatgcctcttcagcttcctGTAGATGGTCCAGTAAACACACACCTGGGCTGAATGGTAGAGCTGATTGCTCATACACAAGGGTAGACCTGTGGGCAGGGATTTTCAAACTTATACAGTCAATGAGTTTTCCATGGTGTTCTGGAGAGCACCCTTTAAGAAACACTTTGACAGTGAATCTAGGCCTCAATATTCATCAGCTGCTCTAGCTTGAATTT a score=54128.0 s hg17.chr17_random 906497 662 + 2618010 TGCTCAAGCTCAGTGAACACCTGCTCTGCCGGGTGCACGTGAAAGGGACAAGGATGAGAAAGCTGTAGATAAAGAAGACAGGATGCAGGGGGTCTGTCTAAGCTCTATCCCCTGCCTTCAGCACTGAGGGATGAA----ATCCAACTCTTAGGGAACGGTGGCCACGTGCTGGGCCAGCCCCAGGCTCTCAGGATCTGACAGTGGGTGACGCAGAGCCAGGCCTTGCCCCTGGGGAGCTCTCCAGCATACACCTCCCTCTCCCCTCCCAGCGTCCCGCAAAGCAGGCGTCAACGCCATTGTTAATGCACGGAGGAGGAACCTGACTGTTAGACC------TGGGTTTTCCAGGGTTG------CACGGCTTCTGGGAGACGGATGTGACCCTGAGGACAGGGCACAGGCCAGTGTAATGCCAGGATGGAATGAGCTGTGATCTGTGCTGTATAGAGGCCTAGGCCAAGGTGGGACTGACGGATGACCAGGTCAGCCGGGTCACTGAAAACACTCTTGGGTCCTCACCTGCCGGTTCCCAGGAGTCCGGAACTGCCAGGAGAGTGGTGGCAGGTCCCCCATCCTCAGCTGGGTGGGCCTGGATAGAACAGCAAGGCGAGGGCACATTTCCCTGGCCATTCCCTCCAGGCACAGCTGTGACCTGTTCATTCCAAATTGGT s panTro1.chr19 56137789 674 - 82489036 TGTTCAAACTCAGTGAACACCTGCTCTACAGGGTGCATGTGAAAGGGGCAAGAATGAGTAAGCTGCAGATAAAGAAGACAGAACACAGGGGGTCTGTCTAAGCTCTATCCCCTGCCTTCAGCACTGA----TGAAGCAAATCCAATACTTAGGGAATGGTGGCCACATGCTTGGCCAGCCCCAGAATCTAAGGATCTGACAGTGAGTGACGCAGAGCCAGGCCTTGCCCTTGGGGAGCTCTCCAGCATACACCTCCCTCTCCCCTCCCAGCGCCCTGCAAAGCAGGCGTCAATGCCATTGTTAATGCACAGAGGAGGAACCTGACTGTTAGACGGGTTGATGGGTTTTCCAGGGTCAGGGTCACATGGCTTCTGGGAGACGGATGTGACCCTGAGGACAGGGCACAGGCCAGTGTAATGCCACAATGGGATGAGCTGTGGTCTGTGCTGTGTAGAGGCCTAGGCTAAGGTGGGACTGACGGATGACCAGGTCAGCCAGGTTGCTGAAAACACTCTTGGGTCCTCACCTGCCAGCTCCCAGGACTCCGGAACTGCCAGGAGAGTGGTGGCAGGTCCCCCATCCTCAGCTGGGTGGGCCTGGATAGAACAGCAAGGCGAGGGCACATTTCCCCAGCCATTCCCTCCAGGCACAGCTGTGACCTGCTCATTCCAATTTCGT a score=27292.0 s hg17.chr17_random 907159 251 + 2618010 GGAAGTATTTCCACACACACAGAACTGCAAAtagcagtggacatggtgagaggcgtttgcacatggga-taggcaggattttggaggaagagcctccagggcttgccgatgggttagctgcagggcttgag-agggaacggagaatccaggatgaTGTGTTCAAATCGGTCCATTCACCT-------------------CTTCCGTTCCACGCCTGTGCTGGGCACTGGGAGAGACAGATGCACACAGGAGCCCCGGACGAGGGG------AGGTGTG s panTro1.chr19 56138463 251 - 82489036 GGAAATATTTCCACACACACAAAACTGTAAAtagcaatggatgtgctgagaggagtttggacatagga-taggcagtattttacaggcagagcatccagggcttcctgacgggttagcttcagggcttgagcaaggaa-ggagaaccgaggaCAATGTGTTCAAATCTGTTCACTCACCT-------------------CCTCCGTGCCACACCTGTGCCGGGCACTGGAAGAGACAGATGAGCACAGAAGCCCTGGCCTGGGGG------AGGTGTG s canFam1.chr9 18856723 260 - 53642819 GAAAATACGTCCACACACTCCGAATTCAGAGTAGCAGTGGAAGT----------GTTTTCATTTGGGACTTAGCAGGATTTTGAAGGCAAGCCCTCCAGGGCTTGTGGAAGTGTTGGTGTTGGGGCTTGAGTGGGGTA-GGAGGATGAGGAGCGAGGTATTCATATAGGTTTATTTGACTGGGATTCACAGAACCCTCACCCCTGTACCACACTGGTGCTGGGCG-TGGGCGGGGTGGGGGGAAACAGG------TGATAAGGGGTCTCCTGGGTTGG a score=94797.0 s hg17.chr17_random 907410 262 + 2618010 GGGGGAAGCCCAGAGTGTCTGGGCAGGGTAGGAAACCCAGAGCGTCT---ACTGGGAGCTGAAGGCTTAGGTCCACC-TGGGTGCCGTCCAGGTTCTCTGCGTGTAGAAGTATAGGCT----GAGCTTCCTGGAGGAGGAGCAGCTGCTGTTGCTGGT---GACCAGCACATTCAGGAACGGAGACTACTCTGTCAACAGACAGGGGGATGACCTGAGGTCTGGATGGTCTAGG----GGGTGGTAGGG----------CCCAGGAGGACCCAGGAAAGGGTCTCGG s panTro1.chr19 56138714 239 - 82489036 GG---------------------------AGGAAGCCCAGAGCATCT---ACTGGGAGCTGAGGGCTGATGTCCACC-TGGGTACCATCCAGGTTCTCTGCATGGACAAGTACAGGCTAGAAGAGCTGCCTGGAGGAGGCACA---GCTGTTGCTGGTGGAGACCAGCACATTTGGCAATGGAGACTGCCCCAGCAATGGAGAGGTGGGTGGCCTGAGGTCTGGCTGGTCTAGG----AGGTTGTAGGG----------TGTGGGAGGACCCAGGAAAGGGTCCAGG s mm5.chr11 78558353 232 + 121648857 GGAAGGAGTCTGG----------------AGTGAGTGTAAGCGGCCC---CTTGGGAGCTGGGGGCTGATGTTCAAC--GGTTGTCACACAGGTTGTCTGCATGGACCAGTATAAGGC----AAGCACCTTGGAAGAGGAGCA---ACTACTGCTGGTGGTGACAAGCACATTTGGGAATGGAGACTGTCCCAGCAATGGGCAGGTGGGTGGCCGGAGACTCGGCAGA-----------------GAGG----------CTTGGGAGGACCAAGGAAAGGGTCCGGG s rn3.chr10 65072068 243 + 110733352 GGAAGGAGCTTGG----------------GGTGAGTGTAAGGGACCC---CCTGGGAGCTGAGGGCTGACATCCATG--GTGTGCCACACAGGTTGTCTGCATGGAACAGTATAAGGC----AAACACCTTGGAAGAGGAACA---ACTACTGCTGGTGGTGACAAGCACATTTGGCAATGGAGACTGCCCCAGCAATGGGCAGGTAGGTAG-CAGGGACACTGCTCATCT-GG----GGGCAGAGGGG----------CTTAGGAGGACCAAGAAAAGGGCCCAGG s canFam1.chr9 18856983 271 - 53642819 GGAGGAAGCACAGGGCATCTGG-------AGATGGCATAGAGGGCCTCGGCCTGGGAACACAGGGCTGATGTCCACCCCCGGGGCCTTGCAGGTTCTCTGCATGGACGAGTACAAGCT----GAGCCACCTGGAGGAGGAGCA---GCTACTGTTGGTGGTGACCAGCACGTTTGGGAACGGAGACTCCCCTGGCAATGGAGAGGTGGGTGGCCTGGGGCCCAG-TGGTCTGGGTGCAGGGTTGTGGGGGATGCCAGGCCCCAAGGGAGCCAAGGAAAGGATCTGG- a score=7041.0 s hg17.chr17_random 907412 27 + 2618010 GGGAAGCCCAGAGTGTCTGGGCAGGGT s panTro1.chr19 47468999 27 + 82489036 GGGAAGCCCAGAGTGTCTGGGCAGGGT s mm5.chr11 78558355 20 + 121648857 AAGGAGTCTGGAGTG-------AGTGT s rn3.chr10 65072070 20 + 110733352 AAGGAGCTTGGGGTG-------AGTGT s canFam1.chr9 18856985 27 - 53642819 AGGAAGCACAGGGCATCTGGAGATGGC a score=4684.0 s hg17.chr17_random 907672 8 + 2618010 GGATGCAG s panTro1.chr19 47443377 8 - 82489036 GGATGCAG s mm5.chr11 78558585 8 + 121648857 GGACTCAG s rn3.chr10 65072311 8 + 110733352 GGACTCGG s canFam1.chr9 18857254 8 - 53642819 GGATTTAG a score=29162.0 s hg17.chr17_random 907680 171 + 2618010 AACATCCTATGGAGGGCATTTGGGAGTCAGTGCTCAGGCCACTCCGGGTCACGCAGgtcatttgccggcccctgtcataattattgccatatgagagtgccacccgtcctatgacata----------ttttatatatttctg--tgaa-tggcctacttgtttgtatttatgaatttatgttt s panTro1.chr19 47443385 171 - 82489036 AACATCCTATGGAGGGCATTTGGGAGTCAGTGCTCAGGTCACTCCGGGTCACTCAGgtcatttgccggcccctatcataattattgccatatgagagtgccacccgtcctatgacata----------ttttatatatttctg--tgaa-tggcctacttgtttgtatttatgaatttatgttt s rn3.chr10 65072319 143 + 110733352 -------TGTG------ACCTGGA----ATTACTCGGGCCACTCTGGGTC-CTTAAGCCATTTCCC---------------CATTGGCACACAGGG-------CTTTCCTGTGACTTGACCAACTCTTCTTTATATATGTCAGATTACT-TGAGGTGATTAATTACATTTATTTATTTATGTTT s canFam1.chr9 18857262 169 - 53642819 CATGTCCTAAGGAGGACATTTGGAAATGAGTGCTCAGATCACTCTGGGCT-GCCAG--cgtttacctgccttctttgtaattctcaccatatgtacgtgatgcctttccaatggcata----------ttttatattttcaag--taaattgactcacctttttaaactcaaaaatttatgtct a score=1692.0 s hg17.chr17_random 907851 6 + 2618010 aaagga s panTro1.chr19 47443556 6 - 82489036 aaagga s canFam1.chr9 18857431 6 - 53642819 aaagga a score=291.0 s hg17.chr17_random 907857 3 + 2618010 TGG s panTro1.chr19 47443562 3 - 82489036 TGG a score=1345.0 s hg17.chr17_random 907860 6 + 2618010 GCAGGG s panTro1.chr19 47443565 6 - 82489036 GCAGGG s canFam1.chr9 34780474 6 + 53642819 GCTGGG a score=38843.0 s hg17.chr17_random 907866 186 + 2618010 GTGCTCGAGAGGTCC--------------CC--AGGAGTTTCCCTCTGGGGAGAGA--GGGGCCCACCCCTTCCCAGCAGC-CCTCTGAGCCCCCC-GATCGCTTGGCCACAGCCTCTGCCTGGAGAAAGCAT-CCCCCTCGGAGATATATGGACATCAGAAGAAACCTTTCTCTGTCACCAGGACAAATCCTGTTCTTACTTGAAC s panTro1.chr19 47443571 186 - 82489036 GTGCTCGAGAGGTCC--------------CC--AGGAGTTTCCCTCTGGGGAGAGA--GGGTCCCACCCCTTCCCAGCAGC-CCTCTGAGCCCCCC-GATCGCTTGGCCACAGCCTCTGCCTGGAGAAAGCAT-CCCCCTCGGAGATATATGGACATCAGGAGAAACCTTTCTCTGTCACCAGGACAAATCCTGTTCTTATTTGAAC s rn3.chr10 45656531 167 - 110733352 GTGCTCCAGAGTTTC--------------CCAGAGGAGTTT------------------GGCTACAGCCTTCCCTAGAAG----TGTGGGTATCATGGAGCACTTGGCCACA-TTTTTGCCACAAG-GAGCAT-CTCGTTCAGAG-TGTGTGGACACTAGAGGTAGCCCTTCTTTATCTCCAAAACAAATCCTGTTCTCACTGGAAC s canFam1.chr9 34780480 203 + 53642819 GTGCTCAAGAGGGCCTGTGGCCAACCAGGCC--TGGGGCTTCTCTGTGGAAAAAGGGTGGGCCGCAGCCTCCCGGTGCAGCACTCCCGAGCCCAGC-CAG-GCTTGACTACACCCTCCATCTAAAGAGAGCATCCCCCCTGGGAGATCAGTGGCCATTAGGACAAACCCTTCCTTGTCCCCAGCACAAATCTGGCTCTCATTAGAAC a score=68859.0 s hg17.chr17_random 908052 400 + 2618010 CAAGGCCAGGTTTCCTAATGAATGCAG--G-GAGGACAGCACAGATCA-----ATGAAACC----AGCAGATAATCCACAAGACTG-TTTCCCAGAGCTGGGAAATTTCCTTCCCTGCC-AACACTTTTCCTGAAAGTTCTTAAGAATGAGGCAAACAGTTTAAGTCTCTCTCGCACTGTTCTTTTAGTGAAAGAGTTCAATGAGGAAAGAGAGGAAGTGGAGCATATGCTTAGTTTCCAAGCTGGAAAAGTGGCCCATGGTTAACCAAGACTAGATGTAAAAGCACAGGTGTCCACGGGT----CCAGGTGAGCCGGTCCTAC-GATGGCATGGCTGCTAATGCCA-GCAGATGCTCCTGTCCTCTCCTTTCAAAGACTGACTTCTTCTGGTCTTTCATTCGTT----------AAAATAAAATTGACA s panTro1.chr19 47443757 400 - 82489036 CAAGGCCAGTTTTCCTAATGAATGCAG--G-GAGGACAGCACAGATCA-----ATGAAACC----AGCAGATAATCCACAAGACTG-TTTCCCAGAGCTGGGAAATTTCCTTCCCTGCC-AACACTTTTCCTGAAAGTTCTTAAGAATGAGGCAAACAGTTTAAGTCTCTCTCGCACTGTTCTTTTAGTGAAAGAGTTCAATGAGGAAGGAGAGGAAGTGGAGCATATGCTTAGTTTCCAAGCTGGAAAAGTGGCCCATGGTTAACCAAGCCTAGTTGTAAAAGCACAGGTGGCCGCGGGT----CCAGGTGAGCCGGTCCTAC-GATGGCATGGCTGCTAATGCCA-GCAGATGCTCCTGTCCTCTCCTTTCAAAGACTGACTTCTTCTGGTCTTTCATTCGTT----------AAAATAAAATTGACA s rn3.chr10 45656698 341 - 110733352 TGAGGCTACTTTCCCCCAGGATAGGAG--GAAAGGAGAGGAGGGACCATGCAGATAAAATCACGGATCGGATCGCTCACAACCCTC-CTCCACCTGGCTGGGAAATCCCCACCCTTGCCTAACAA---CCACAAAAGGCCTGAAGACT----CAGATGCTCTGCGTGTCCCCTGGTCTG-------------AGAGTTCAGAGAGGAGGAAGGGCCAGTGAGGCAGACATCCAGCTTCCAAACCAGACAAA-GGCAC-----------AGACTAGCAGAGAAGGT---GGTCCCCAC-----------AGTGATCC---CCTTG-GGGGGCCTGTCT------------------------CCCTCCCCGCCTACAGACTGACTGTCTCTGGTTCTTTGTGCATT--------CCAGAGCAATCCT---- s canFam1.chr9 34781003 408 + 53642819 CAAAGCTGGTTTTCCTAATGATTGGGGCAG-GGGGACAGCACAAATGA-----ACAAAACC----CACAAGGAATGCATAACACCCATTTCTCCTGGTGGGGAAATGTCCTTACCTGCC-AAAATTTTTCCTAAAAGTTCTTAAGAGC----CAAATGGTTTGAGTTTCTCTTGCTCTCCACCTTTGGTGAAAGGGTTTAGTGACAAAGGGCAGGTGGTAAAGCAGGTGCCTAGTTCTCAAGCTGGAAAACCAGTGTATGGTTAATGGAGACCAAACTTAAAGGCACTGGAGGTCACAGGGGTTACCAGCCAAGCTGGTCCTACAGATGGCATCATCGCTAATGCTGTGTACAC-------CTCTCTCCTTTCAAACACTGACTGGCTCTGGTCTTTTTTTGTTTTGTTTTGTCTTAAATTAAACCGGCA a score=88595.0 s hg17.chr17_random 908452 212 + 2618010 GGGCATCATCCGAGAAGCTCTACACTTTCCCTTACTTGGATTTCAGACTCT--AGATTCGGCTGAGATTTGAGCTTCATGGTGAACACATTCTTGGTGTGCTTGCTGCTGAGGGGTGTGGAGGACAGAGAGATGGTGAAATGGCAAAGTGACTCTTGAGCATGGGTGGGGGAAGCCCCCACATGTCTGAGTCAGTGCCACCTGGACACTACCCT s panTro1.chr19 47444157 212 - 82489036 GGGCATCATCCGAGAAGCTCTACACTTTCCCTTACTTGGATTTCAGACTCT--AGATTCTGCTGAGATTTGAGCTTCATGGTGAACACATTCTTGGTGTGCTTGCTGCTGAGTGGTGTGGAGGACAGAGAGATGGTGAAATGGCAAAGTGGCTCTTGAGCATGGGTGGGGGAAGCCCCCACATGTCTGAGTCAGTGCCACCTGGACACTACCCT s mm5.chr11 43086576 202 - 121648857 GGGTACCAGCTAAGCATCCCTGCCCAT--CCTTACCTGGACTTTTCACTCTGCAGATTCTGCTGGGATTTCAGCCTCATGGTAAACACGTTCTTTGCATGGATGCTGCTGAGGGCTG-GAAAGACAGACA------GAAATGGTACAG-ATCTCCTGTGC-TGTGCTGCGGAAAGCCCCAGACG-CTGAGCTGAGCATTCCTGCATGCTACCTT s rn3.chr10 45657039 188 - 110733352 GTGTACCAGCC-------------CAT--CCTTACCTGGACTTCTCACTCTGCAGATTCTGGAGGGATTTCAGCCTCATGGTGAACACGTTCTTGGCGTGGATGCTGCTGAGAGCTG-AGGAGACAGACA------GAGATGGT-CAG-AGCCCCTATGC-TGTGCTGGGGGAAACCCCATATG-CTGGGCTGAGCATCCCTGCATGCTACCTT s canFam1.chr9 34781411 212 + 53642819 GAACATCACCCAAGCAGCCCGGTAGTCTCCCCTACCTGGATTTTGGACTCTGTAGATTCCGTTGTGATTTGAGCCTCAGGGTGAACACGTTCTTGGCATGCATTCTGCTGAGGGCTGTGGGAGACAGAGA--TGATGAAGTGAAAAAGTGGCTCTTAAGTGCTGGTGGGGGTAGCTTCCATGTGTCTGAGTCAGTTTTACCTGGACACTACCCT a score=5102.0 s hg17.chr17_random 908664 49 + 2618010 TGGAGCATCCTGCTGAGGT-GGCCATTCCGGTTTTCTTTCCTTTCCTTTT s panTro1.chr19 47444369 49 - 82489036 TGGAGCATCCTGCTGAGGT-GGCCATTCGGGTTTTCTTTCCTTTCCTTGT s rn3.chr10 45657233 45 - 110733352 TGGTG-----TCCTGAGACAGGGCCTGCTAGATTTGTTTCCTTTCCCCAT s canFam1.chr9 34781623 46 + 53642819 GGGGGTGTCCCTCTGTGAC-AGTAGTGGGGTTTTCTTTTTCCCTGCT--- a score=6495.0 s hg17.chr17_random 908713 30 + 2618010 ATTCCACTGTTTCTGAATCACAAATAAAGA s panTro1.chr19 47444418 30 - 82489036 ATTCCACTGTTTCTGAATCACAAATAAAGA s canFam1.chr9 34781669 24 + 53642819 ------GTGTTTCTGAATCACAAATAAAGA a score=1898.0 s hg17.chr17_random 908743 3 + 2618010 TCC s panTro1.chr19 47444448 3 - 82489036 TCC s mm5.chr11 78561660 3 + 121648857 TCC s rn3.chr10 65075068 3 + 110733352 TTC s canFam1.chr9 34781693 3 + 53642819 CCC a score=0.0 s hg17.chr17_random 908746 92 + 2618010 AAGGCAAACAGCACATTCAGATCCCCAAGCTCTCCACCTCCAATGTGACCAGGGACGTGCACCACTTCAGGCTCATGCAGGACCCACAGCCT a score=11745.0 s hg17.chr17_random 908746 19 + 2618010 AAGGCAAACA---GCACATTCA s panTro1.chr19 47444451 22 - 82489036 AAGGCAAACATGCTCACATTCA s mm5.chr11 78561663 19 + 121648857 GAAGCAAACA---TCACATTCA s rn3.chr10 65075071 19 + 110733352 GAAGCAAACA---TTGCATTCA s canFam1.chr9 18860173 19 - 53642819 GAGGCAAACA---CTGCATTCA a score=41831.0 s hg17.chr17_random 908765 73 + 2618010 GATCCCCAAGCTCTCCACCTCCAATGTGACCAGGGACGTGCACCACTTCAGGCTCATGCAGGACCCACAGCCT s panTro1.chr19 56141640 73 - 82489036 GATCCTCAAGCTCTACACCTCCAATGTGACCTGGGGCTTGCACCACTTCAGGCTCGTGCAGGACTCACAGCCT s mm5.chr11 78561682 73 + 121648857 GATCCCGAAACGCTTCACTTCCAATGCAACATGGGAGCCACAGCAATATAGGCTCATCCAGAGCCCGGAGCCT s rn3.chr10 65075090 73 + 110733352 GATCCCGAAACGCTACACTTCCAACGCAACATGGGAGCCAGAGCAGTACAAGCTCACCCAGAGCCCAGAGCCT s canFam1.chr9 18860192 73 - 53642819 GATCCCCAGGCTCTACACTTCCAATGTGACCTGGGACCCACACCAATACAGGCTCGTGCAGGACTCGCAGCCT a score=6235.0 s hg17.chr17_random 908838 49 + 2618010 TTGGACCTCAGCTAAGGGACCTGCTTCTCTTCAGCACACGGGGCTTGTT s panTro1.chr19 56141713 49 - 82489036 TTGGACCTCAGCTAGGGGACCTGCTTCTCTGTAGCACATGGGGCTTGTT s mm5.chr11 78561755 49 + 121648857 TTAGACCTCAACAGAGGTAAGAGCCCCTCTGCACCCTACTGGGCCTTCC s rn3.chr10 65075163 48 + 110733352 CTAGACCTCAACAAAGGTACCAGCCCCTCC-CACCCTACAGCTCTTTCC s canFam1.chr9 34781696 19 + 53642819 TTGGACTG-----------------------------ACAGGGGTGTT- a score=2835.0 s hg17.chr17_random 908887 7 + 2618010 TGTGTTG s panTro1.chr19 47470489 7 + 82489036 TGTGTTG s mm5.chr11 78561809 7 + 121648857 TGAGCTG s rn3.chr10 65075215 7 + 110733352 GGAGTTG s canFam1.chr9 34781715 7 + 53642819 TGTGACG a score=0.0 s hg17.chr17_random 908894 96 + 2618010 GGGTCTGAGCCCTGAGCGCATGGTCAAGGAGACCCCCAGGTCTTTCTGAACAGAGACAGCTGGCCTGGCGGCCTCCCTCTCACTGCATGCAAGAGT a score=5655.0 s hg17.chr17_random 908894 19 + 2618010 -----GGG---TCTGAGCCCTGAGCGC s panTro1.chr19 47470496 19 + 82489036 -----GGG---TCTGAGCCCTGAGTGC s mm5.chr11 78561816 22 + 121648857 -----AGGCTATCTGAGCCCTGAACCA s rn3.chr10 65075222 22 + 110733352 -----GGGCTATTTGAGCTCTGAACCA s canFam1.chr9 18860327 27 - 53642819 GGGTGGAGGTCTCTGACCCTGGGGTCT a score=4537.0 s hg17.chr17_random 908913 7 + 2618010 ATGGTCA s panTro1.chr19 47470515 7 + 82489036 ATGGTCA s mm5.chr11 78561838 7 + 121648857 GTAGTCA s rn3.chr10 45657518 7 - 110733352 ATAGTCA s canFam1.chr9 18860354 7 - 53642819 ATGGTCC a score=8551.0 s hg17.chr17_random 908920 45 + 2618010 AGGAGACCCCCAGGTCTTTC---TGAACAGAGACAGCTG-----GCCTGGCGG------- s panTro1.chr19 47445110 45 - 82489036 AGGAGACCCCCAGGTCTTTC---TGAACAGAGACAGCTG-----GCCTGGCGG------- s mm5.chr11 78561845 53 + 121648857 AAGAATCCACCATGCCCTTCTAATGAAGGCAGTCACCTGGAACTGCCAGGCAG------- s rn3.chr10 45657526 37 - 110733352 AAGGGCCCTCGA-----------TGAACAGCGCCTTCGT-----GGCTGGGAA------- s canFam1.chr9 18860361 52 - 53642819 AGGAGACCACTAGGACCCTC---TGAACAGAGACAGCTG-----GCTTAGGGCTGCTAGG a score=2575.0 s hg17.chr17_random 908965 25 + 2618010 CC-TCCCTCTCACT-GCATGCAAGAGT s panTro1.chr19 47445155 25 - 82489036 CC-TCCCTCTCACT-GCAGGCAAGAGT s mm5.chr11 78561898 21 + 121648857 CTGTCTCCCTGGCC-ACAGG-----GT s canFam1.chr9 18860413 26 - 53642819 CC-TCTCTCTATCTCGTATCCAAGAGC a score=934.0 s hg17.chr17_random 908965 25 + 2618010 CCTCCCTCTCACT-GCATGCAAGAGT s canFam1.chr9 18860413 26 - 53642819 CCTCTCTCTATCTCGTATCCAAGAGC a score=3534.0 s hg17.chr17_random 908990 12 + 2618010 CTGTTAGG-GCGG s panTro1.chr19 47445180 12 - 82489036 CTGTTAGG-GCGG s mm5.chr11 78561919 12 + 121648857 CTGTTGGT-ACAG s canFam1.chr9 34781722 13 + 53642819 CTGCTAGGTGCGG a score=612.0 s hg17.chr17_random 908990 12 + 2618010 CTGTTAGG-GCGG s canFam1.chr9 34781722 13 + 53642819 CTGCTAGGTGCGG a score=0.0 s hg17.chr17_random 909002 20 + 2618010 CTGTCTTGCTTCTGTGTGTT a score=1428.0 s hg17.chr17_random 909002 15 + 2618010 CTGTCTTGCTTCTGT s panTro1.chr19 47445192 15 - 82489036 CTGTCTTGCTTCTGT a score=0.0 s hg17.chr17_random 909002 15 + 2618010 CTGTCTTGCTTCTGT a score=931.0 s hg17.chr17_random 909017 5 + 2618010 GTGTT s panTro1.chr19 47445207 5 - 82489036 GTGTT s rn3.chr10 45657563 5 - 110733352 GTGCC a score=52226.0 s hg17.chr17_random 909022 320 + 2618010 GGGAAATTCAATTTAGGTACCTAAAAATGAAAAGTCCCAGGACATCTCCATGGCTTGGGATCCACAGGAGAGCATCATTGATGCTGGGGATAACTTAAACATATA-GAAACCCGCAGGGCTACCTTAGacagggcacagggcacaggg---cacagCACCCGGGG-ATGCAGAGTGGAAAGTTCACC-ACTACAGCCTGGAATTGCCTCTG--TGATGCCTTC--------TTTATGACACTTGGCTGCCTTTGTGGCTGGAAGGCTGAGGCCCAGATCCCAACATGGCCACAGGCTAGCA-GCTTGCTTCACCTTCCTGAACTGCAATTTCTCCAT s panTro1.chr19 47445212 313 - 82489036 GGGAAATTCAATTTAGGTACCTAAAAATGAAAAGTCCCAGGACATCTCCATGGCTTGGGATCCACAGGAGAGCATCATTGATGCTGGGGACAATTTAAACATATA-GAAACCCGCAGGGCTACCTTAGACAGGGCACAGGGCACAG----------CACCCGGGG-ATGTAGAGTGGAAAGTTCACC-ACTACAGCCTGGAATTGCCTCTG--TGATGCCTTC--------TTCATGACACTTGGCTGCCTTCGTGGCTGGAAGGCTGAGGCCCAGATCCCAACATGGCCACAGGCTAGCA-GCTTGCTTCACCTTCCTGAACTGCAATTTCTCCAT s rn3.chr10 45657568 285 - 110733352 GGGAGATTCAACTTAGATA-TTAAAATACAGAAGACTCAGGACAGCTGTGTGGTTT-------ACAGGAGAACAGGGATAAAGCTGGGCATATCCTAAA-ACATA-GACACATTTATGAT-------GTCTGGCCTCAGGAAACTGAG---TATGTCTCCCAGGGTGGGCAGAGCTG--AGCCACTC-ACTGTCGCCCTGAATCACCTC----AGAAGCCTCC--------TTCATGGCTTGTTGCTCCCTT------TGGAAGACTTAATCCAACCCCCCA-------CCCATGCTGTCACACTTGCTTTGTTTCTGTGAACGTTAAGTTC----T s canFam1.chr9 34781735 324 + 53642819 AGGAAATACA--CTAGGTGCCCAAATATGGGCATTTCTGAGCCATTCCCATGGCCTGGCATCCGCAGGAGAGCTTAGCTGAAGTCGGGCCTAGGCTAACCATGCAGGAAAACCACAATACTGCTGTACTCATGGTACAAGAAAAGAGGAATCACAGTGTCCAGAA----------GGAGAGTTTACCAACGGCAGCCTAGGGTTGCCTCTGCATGATATTCTTTGCGATAGTTTACAATTCTTGGCTGCTGTCAgagctggacagctggggctcaaatcccagctcggccatatgctagga-acttgcttcacttctgtgagcttcagtttctttat a score=6982.0 s hg17.chr17_random 909342 38 + 2618010 CTGAGCCTTTCTC----------CTAAGAGGAGTGTGCAGGGTCACTT s panTro1.chr19 47445525 38 - 82489036 CTGAGCCTTTCTC----------CTAAGAGGAGTGTGCAGGGTCACTT s rn3.chr10 45657853 48 - 110733352 CTGGATTTGTCACAGGTCAAGTGCCAGGACAAGTGTCACAGGCCAGTT s canFam1.chr9 34782185 38 + 53642819 TTGtgcccttctt----------gcaagatgagtgtcagggctcactg a score=-338.0 s hg17.chr17_random 909380 4 + 2618010 --AGCC s panTro1.chr19 47445563 4 - 82489036 --AGCC s mm5.chr11 43086792 4 - 121648857 --AGTT s canFam1.chr9 34782223 4 + 53642819 agag-- a score=-329.0 s hg17.chr17_random 909380 4 + 2618010 --AGCC s canFam1.chr9 34782223 4 + 53642819 agag-- a score=215987.0 s hg17.chr17_random 909384 610 + 2618010 CATATGGGCCAGAAACCCCACACGGTGCCAGGCACA-------CAGTAGGGCCTCGGCAGATGCTGCCCCCTTCTGTCT--CCACCACCCTCCTGGGGCTCCCTCCTGAAACAGCCTCCCTCAGCG-----------CCTTGAGTCTTGCACCCTAACAGCCTCTTGCACGC-AGTGAGAGGGAGGCC-------CTCAGGCCAGCTGTCTCTGTTCAGAAAGACCTGGGGGTCTCCTTGACCATGGGCTCAGGGCTCAGA---CCCCAACACAAAC-----A--------AGCCCCGTGTGCTGAAGAGAAGCAAGTCCTTTAGCTGAGGTCCAAAGGCTGTGAGTCCTGCATGAGCCTGAAGTGGTGCAGGTGCCTGGTCACACTGGAGGTGTAGAGCTTGGGGATCTGAATGTGCTGTTTGCCTCGGACATGAAACATCTCACAGACTGCCTGGAAGAAGGTGGAGCAGACTGGGGTTAATGGTCAGC---------AGCAGCAGCATCCCCACCACTGGGGCTATCCCTTTTTAGGCCCTTAC-CATGGGCCAAACACTGAGCCGTGGGCTTCGTGT--AACTTCTAAGCACGCTTACCTGATAGGGTGACAGCAAAGACTCGAAGAGGTGCCTGGGCTTGGCACATAGTAGCTATTGCTAC s panTro1.chr19 47445567 610 - 82489036 CATATGGGCCGGAAATCCCGCACGGTGCCAGGCACA-------CAGTAGGCCCTCGGCAGATGCTGCCCCCTTCTGTCT--CCACCACCCTCCTGGGGCTCCCTCCTGAAACAGCCTCCCTCAGCG-----------CCTTGAGTCTTGCACCCTAACAGCCTCTTGCACGC-AGTGAGAGGGAGGCC-------CCCAGGCCAGCTGTCTCTGTTCAGAAAGACCTGGGGGTCTCCTTGACCATGGGCTCAGGGCTCAGA---CCCCAACACAAAC-----A--------AGCCCCGTGTGCTGAAGAGAAGCAAGTCCTTTAGCTGAGGTCCAAAGGCTGTGAGTCCTGCATGAGCCTGAAGTGGTGCAGGTGCCCGGTCACACTGGAGGTGTAGAGCTTGGGGATCTGAATGTGCTGTTTGCCTTGGACATCAAACATCTCACAGACTGCCTGGAAGAAGGTGGAGCAGACTGGGGTTAATGGTCAGC---------AGCAGCAGCATCCCCACCACTGGGGCTATCCCTTTTTAGGCCCTTAC-CATGGGCCAAACACTGAGCCGTGTGCTTCCTGT--AACTTCTAAGCACGCTTACCTGATAGGGTGCCAGCAAAGACTCGAAGAGGTGCCTGGGCTTGGCACATAGTAGCTATTGCTAC s mm5.chr11 43086796 581 - 121648857 CATGTGGGCCAAGAGGCCGGCACAGTGCCTGGCACAGCTATCGCCACCACCCACCTGCTGATGCCAGCTCCCTGTGCCCA-CTACCACTCTCTCAGGG----CTCCTGACCCGCTCTCCCTCAGAG-----------CCTGAAGCTCTGTACC--AACAGAC-CCTGTGGCC-AGGGAGACAGCTGCCTGGCAGTTCCAGGTGA-CTGCCTTCATT-AGAAGGGCATGGTGGATTCTTTGACTACTGGTTCAGGGCTCAGATAGCCTCAGCTCAAGCAGGGAA--------GGCCCAGTAGGGTGCAGAGGGGCTCTTACCTCTGTTGAGGTCTAAAGGCTCCGGGCTCTGGATGAGCCTATATTGCTGTGGCTCCCATGTTGCATTGGAAGTGAAGCGTTTCGGGATCTGAATGTGATGTTTGCTTCGGACATCAAAGGTCTCACAGGCTGCCTG---GAAAGTTAGGCAGAATGGCATTCATCGT---------------------CACCGTCACCAC--------------------CCCTCAC-CATGGGTCAAATACCGAATGGCG-GCATCACAG--AATCACAACGTGC---CATCTGAAAGGG----GCTGGAGGCGCTCAGAGAATCCTAGGCTTGGCACACAGTGGTTAGTGATAT s rn3.chr10 45657901 564 - 110733352 CATGT-GGTCAAGAGGCTGGCACAGTGCCTATCAGAGTTGTCTCCACCACCCACCCACTGATGCTGGTTTCCCGTGCTCA-ATACTACTCTCCCAGGG----CTCCTGACCGGCTCTCCCACAGAG-----------CCT------------------AGGC-TCTGTAGCC-AGGGAGACAGATGCCTGGGAGTTGCAGGGGA-CTGCCTTTATTCAGAAGGGCATGGTGGATTCTTTGACTATTGGTTCAGAGCTCAAATAGCCCCAACTCCCGC-AGGAA--------AGAGCTGTAGGGTG-GGAGGGGCTGGTACCTTTGTTGAGGTCTAGAGGCTCTGGGCTCTGGGTGAGCTTGTACTGCTCTGGCTCCCATGTTGCGTTGGAAGTGTAGCGTTTCGGGATCTGAATGCAATGTTTGCTTCGAACATCGAACGTCTCACAGGCTGCCTG---GAAAGTTAGGAAGAATGGCATTCATCAT---------------------CACCGTCACTAC--------------------CCCTCAC-CATGGGTCAAATACTGAACGGAT-GTGTCATAG--AACACCTCAGTGTGT-CCTCTGAAGGGG-----CTGGAGAAGCTCAGAGAATCTCATGCTTGGCACACAGTGGTTATGGATAC s canFam1.chr9 34782227 643 + 53642819 tgggcaggcgaggagcccagcacagtgcctggcaca-------taggaggctctcagttggtgctggttcccttTGTCTCTCCACCACCCTCCCAGGGCTTCCTCCTGAAACAGCCTCCCTCAGAGATGAAGCAAGCTCTCCAGTCTTGCATGCCAGCAGGCTCTTGGATACGAGATAGAGAGAGGCCTAGCAGCCCTAAGCCAGCTGTCTCTGTTCAGAGGGTCCTAGTGGTCTCCTGGACCATAGACCCCAGGGTCAGAGA-CCTCCACCCCAGC-AGGAAGGGCAACCAGTCTCGTGTGGTGCGGCAAAGCAGGTACCTTTGTTGAGGTCCAGAGGCTGCGAGTCCTGCACGAGCCTGTATTGGTGTGGGTCCCAGGTCACATTGGAAGTGTAGAGCCTGGGGATCTGAATGCAGTGTTTGCCTCGCACATCAAACGTCTCACAGGCTGCCTGGAAGAGGATGGAGCAGGCCGGTGTTAACCACTGTCATTGTGGTTAACAAGGTCGATGTCATCAT--CGGCCACCATTTTGTAGGTCCTTACAAATCAGTAAAGT------------GCTTCCTGTAAAATTACTGAGCACATGGATCTGATAGAGCTGCTGCAAGGACTCAAAGAAGTGGCTGGACTTAGCACACAGTTGTTACTGCTAT a score=2120.0 s hg17.chr17_random 909994 9 + 2618010 TATTATGAA s panTro1.chr19 47446177 9 - 82489036 TATTATGAA s mm5.chr11 43087377 9 - 121648857 TTTCCTGGA s rn3.chr10 45658465 9 - 110733352 TGTAATGGA a score=27938.0 s hg17.chr17_random 910003 309 + 2618010 TGttgttttgtctttgtttttgttttgagacagggcctcactctgttgcccaggttggagtacagcaatgccatcatagctcactgaagcctcaacctccctgggtttgagcaatcctcccacctcagcctcccaagtagctgagactacaggtgtgcgccaccaagcccagccaattgtttgta-ttttcagtagagactggttttgccaagtcgcccaggctggtttcgaactctggggttcaagcaatctgcccacctcagcctcccaaagtgctggcattacaggcgtgtgccactgcgcccagcc s panTro1.chr19 47446186 310 - 82489036 TGTTGttttgtctttgtttttgttttgacacagggcctcactctgttgcccaggttggagtacagcagtgccatcatagctcactgaagcctcaacctccctgggtttgagcaatcctcccacctcagcctcccaagtagctgagactacaggtgtgcgccaccaagcccagccaattttttgtatttttcagtagagactggttttgccaagtcgcccaggctggtttcgaactctggggttcaagcaatctgcccacctcagcctcccaaagtgctgggattacaggcctgtgccactgcgcccagGC a score=3118.0 s hg17.chr17_random 910312 30 + 2618010 ATTATGAATGTCAATATTGAcatgatcttg--- s panTro1.chr19 47446496 30 - 82489036 ATTATGAATGTCAATATTGACATGATCTTG--- s canFam1.chr9 34782871 29 + 53642819 AGTATGGATATTAat----acagtatctcattt a score=20502.0 s hg17.chr17_random 910342 70 + 2618010 tatccttatgcccacactgggagaggtct-gattgtccccatgttcctggtgtggaaCCACATGGAAGAGG s panTro1.chr19 47446526 70 - 82489036 TATCCTTATGCCCACACTGGGAGAGGTCT-GATTGTCCCCATGTTCCTGGTGTGGAACCACATGGAAGAGG s mm5.chr11 43087409 68 - 121648857 TATCCCTTCCCACATAGCAAGGGATGTCTGGGGTTTCCCTA---TCCTGATAGAAAAGCTCATAGAGGAGG s rn3.chr10 45658497 68 - 110733352 TATCCCTTCTCACTGAGTGAGGGAGGTCTGGGGCTTCCCTA---TCCTCATAGAAAAGCTCATGGAGGAGG s canFam1.chr9 34782900 68 + 53642819 tacccgcatgcctgagctctgaga--ttt-gattactcccattctccaggtgtggaGTCATGTGGAGGTGG a score=3809.0 s hg17.chr17_random 910412 7 + 2618010 CCTATGT s panTro1.chr19 47446596 7 - 82489036 CCTATGT s mm5.chr11 43087477 7 - 121648857 CCTGAGT s rn3.chr10 45658565 7 - 110733352 CCTGAGT s canFam1.chr9 30229202 7 + 53642819 CCTCCGT a score=121779.0 s hg17.chr17_random 910419 753 + 2618010 TATCCCAACAGT-GCAGAAGCACAGCCTGAGTCTCTTCTTTGGCTG---AGCCAAGGGCGTGCTGGAGAGGCCTGACAGAAGAAGGAGCGGCCCTTGTGACCAGTGTCCTTTTGGTTCACAAGGAACGTCTCCTCTTGTTGAAGTGACTTGGCTGAGCTTGCTACTTCTGCTGTGAGAGTC--AAATATCAGGATCAAGactttaattat-ccccaatttacagatgatgaaacCATATTGGGCAGGAAAGAAAGTCACCCCAGGAGAGCAAG---TTGGACCTGAGCACTGGCTGAGGACAAA--GGGGAATGATAATTTGGGATGTAGCTTGTTAAGGGGTCTCAC-AAGTGTTCTTGTGATCCAGGTGTCGAGAGGATACAGCAGAAAGGTTGCCAGGGAGATGAGGGTAGGTTACACCGC-AAGAGTGGGAGAAATTAAAGAGAACACGCAA-CAAAGCCTT---GGGACACTGGGAGGGGGATGGACCACCCTGTTTTGTGCTATGGGAGAAGACAGCAAGAAAAGGAATCTGTGTTAAATCCCGAGAGCCTGCAGGAGAAGCAAATGCCCTTCATTTCCTTCATCAGCGGCGAGACTGGCATCCCTGCAGCTTTGGGAAACCATGCTAGTGTAGATGCCAGC-TCACGCCAGCGGGCCTGACTGGGAGACCTTGGGCTGGGGTTCTGGTCTGGGGCTCCTAGGCCTGATGGGAGGAGAGTTCA-GCCCCAGGTTTCCTGTACTTCAGCTCATATCCACACAATGGTA s panTro1.chr19 47446603 753 - 82489036 TATCCCAACAGC-GCAGAAGCACAGCCTGAGTCTCTTCTTTGGCTG---AGCCAAGGGCGTGCTGGAGAGGCCTGAGAGAAGAAGGAGCGGCCCTTGTGACCAGTGCCCTTTTGGTTCACAAGGAACGTCTCCTCTTGTTGAAGTGACTTGGCTGAGCTTGCTACTTCTGCTTTGAGAGTC--AAATATCAGGATCAAGACTTTAATTATCCCCCAATTTACAGATGATGAAACCATATTGGGCAGGAAAGAAAGTCACCCCAGGAGAGCAAG---TTGGACCTGGGCACTGGCTGAGGACAAA--GGGGAATGATAATTTGGGATGTAGCTTGTTAAGGGGTCTCAC-AAGTGTTCCTGTGATCCAGGTGTCGAGAGGATACAGCAGAAAGGTTGCCAGGGAGATGAGGGTAGGGTACACCGC-AAGAGTGGGAGAAATTAAAGAGAACACGCAA-CAAAGCCTT---GGGACACTGGGAGGGGGATGGACCACCCTGTTTTGTGCTATGGGAGAAGAGAGCAAGAAAAGGAATCTGTGTTAAATCCCGCGAGCCTGCAGGAGAAGCAAATGCCCTTCATTTTCTTCATCGGTGGCGAGACTGGCATCCCTGCAGCTTTGGGAAACCATGCTAGTGTAGATGCCAGC-TCACGCCAGCGGGCCTGACTGGGAGACCTTGGGCTGGGGTTCTGGTCTGGGGCTCCTAGGCCTGATGGGA-GAGAGTTCA-GCCCCAGGTTTCCTGTACTTCAGCTCATATCCACACAATGGTA s canFam1.chr9 30229209 726 + 53642819 CATCCTGGCCACAGCAGAAGCACAGCCT-AGTCCCTTCTCTGGCAGCGAGGCCAATGGCATGCTTGAGGGGCCT-----------GAGTGGCCATTGTAACCAGCATCCTTTAGGTTCA-AAGCAGTATCTCCTCCCATCTAAGTGGCTTGGCCGAGTTTGCAACTTGTGCTTT-AGAGTCATATATATCAGGATCAAGACCTTAATTAT-TAATAGCTCACAGATTAAGAAATCATATTGAACAAGAAAGAAAATCATTCAGAGGGACCAAAGGTTTGGTCTGGGGCACTGGTTGAGGGTAAACTGGGGGCCG------TGGGGTGCAGCTTGCCAAAGGACTTCTCAAAATGTTCTGATGCACTATGT----AGAGAATTGTGCAGAAAGGTGGCCAGGGAGATGGGAATAGGGTGCCCATCAAAGAGCAAGACAAACTAAAGAGAATATGCAACCAAAGCCTTCCAAGGGGATTCGGAGTGG---GGCCAACTCTGCTTTGTGCTCCAGTAGAAAAACATGAGAAAGGGAAGCTGCGCCAAACCCCGGCCACCTGTAGGGGGAGGCAACATCCTTGACTCTGTCCACCAGCTGAGACACCGGTATCCGTG--GCTTTGGGAAACCAGGCTAATGTGGGGGCAAGCTTTGCTTCAGTGAGCCTGGCTGTAAGGCCTCAGGCCAGGAT----------------CAGGCCTGACAGGAGGGGAGTTCAGGCCCTAGACTGCCTGCTCCG-GGTTCCTGTCTACAGGATGGTA a score=233421.0 s hg17.chr17_random 911172 2626 + 2618010 ATTATTGAAATGAGAGACTCAAAAGAAGATGGAACGTGAACTTTTTTGTTGTCCCATGTGGACacctgtgttcggtttccagttctacctcttgctgtctgtgtgttcttaagtaactcacttaaacctttctgagtctcattttcttcatttataaaataaaagacataacatttatgtcagatattgtcctgaggattaaatgggagaatgAACAAGCCTCTTCTGCATTCCCctggcatccagtgggtggaggccagagaagctgctaaacatcctg-ccaggtgcaggacagcccccatcacaaagaattgaccggatcctgatgtcagtaaggcagaattgaggatcct-tggt-gtgggggaaaaagaataaactcagaagcttggcagatctcagttcaaaccctggttgtatcacctctagctgagtgaccttaggcaggtctgtgaactctttgagactcggcctcctcatcggtagaatgaggtagataaaaatgccaagctcacccagaaataaccccgtgcatatatggtcaacagatctttgacaaggccatcaaggatatgcaatgtagattcttttattcctttactttcttaatagacttgctttcactgtactgtaAAAAAAAAaaaaaagcacaatgtagaaagaaaactgtcttcaatgaatagtgttggggaaagtgcgtgaaaaagaatgaaattgcacacttgttttacatcatatacagaaaattagctcaaaacggattaaagatttaaatgtaatatctgaaaccatgtaaatcctggaagtacacatagggaaaaatctcctcgacattggtcataattggcaatttttttttgatgtaacaccaaagcacaggcaacaaaagtgaaaataaataaatgggactacatcaatcttaaaaggttttacgcagcaaaggaaaccatgacaaaatgaaaaggcaacctacgggatggaagaaaatatttgcgacccatata-tttgataaggggttatttgaaaaaatataaggaattcacacaactcaatagcaaaaattaataa--atacatgaataacccaattaaaaataggcaaaggaccccaatggacttttttccccaaagaagatatacaaatggccagacagcatatgaaaaggtgttcaacaccactaatcatcagagaaatgcaaatcaaaaccacagtgagatattgcctcataggataggacggctcttataaaaaaacgacaagagataacaagtgttggcgaaagcatagaggaaagagaacccttgtacactgttggttggaatgtaaagtggtataacctttacagaaaacagtatggaggttcctcaaaaaattagaagcagaactaagcataccattcagcaatcaggttagaaccttgaagagagatctgcgccccatgtttattacaacactattcacaatacccaagatatggaaacagcccaagtgtccagcaacagatgaatggataaataaaatatatataaacaatggactcttagccattcaaaagaagaaactcctgtcctggataaacctggaggacattacgctaagtgaaataagccagacacagaaagacaagttttgtatgatctcacttatatgtgggatctaagagagtcaaactcataaaaacagatagtagaatggtggttgccaagggctggaggtggggaaaatgggaagctattaatcaaagggtgtaaactttcagttataagatgaacaaattctggagatttaatgtacagcataggtggtaatggatgtaataaatttgattgtgataattagtacacaatatatacatatatgaaatcatcacattgtatgcattaaatatatacaatccttgtcaactatttttaaaaaaaa--ttttaaaaTGCCTAGGTCATAAGAATTCTGAGAATGAAAT---ACAACATACACGAATGGACCTGCTACACAGAAGGTGCTAAATAGGTTTGTTTTGTTTTCTTTTATTTCAACTCTGGCAGATGTAGACTTATTGGGAAAGAATATAGAATGCACTTGTGCACAAGGATTATCTATACGATAGTTAAATATCCTGCATACATGCCATGTCATTTCTATTCCTCAGTCAATGGATAATAAAAGCAGAACCAACCTTCTGGTGGTCACAAAACATTTTGACATGAGAAAGGCTGATCATGAgcaatctggcaatgtacatcccagagcgtgcatgccctttgacccacagctaccatcatgtcatgtccagcaattagtcctaaggagatgatcagagatgtgtaaagagatttcattctaacagcatcctctgtagtggtatatgtcaggggctggcaaaccatgtccagaggagcaggctgcatctagtccaccacctgtttttgtaaagtttatcagaacacagtcatgcccattcatttacaaattgtgtatggcttctttccctgcaacagcagagttaagtgttgcaccagaaatctatggcctgcagagtttaaaatatctaccctttggccttttataaaaaaagtttactgactcctggtgagtatattaagaaaaagttagaaaaacctaaatcttccagagtgg s panTro1.chr19 47447356 2631 - 82489036 ATTACTGAAATGAGAGACTCAAAAGAAGATGGAACGTGAACTTTTTTGTTGTCCCATGTGGACacctgtgttcggtttccagttctaccacttgctgtctgtgtgttcttaagtaactcacttaaacctttctgagtctcattttattcatttataaaataaaagacataacatttatgtcagatattgtcctgaggattaaatgggagaatgAACAAGCCTCTTCTGCATTCCCctggcatccaggcggtggaggccagagaagctgctaaacatcctgcccaggtgcaggacagcccccatcacaaagaattgactggatcctgatgtcagtaaggcagaattgaggatccTCTGgtggtgggggaaaaagaataaactcagaagcttggcagatctcagttcaaaccctggttgtatcacctctagctgagtgaccttaggcaggtctgtgaactctctgagactcggcctcctcatcggtagaatgaggtagataaaaatgccaagctcacccagaaataaccccgtgcatatatggtcaacaaatctttgacaaggccatcaaggatacacaatATAGattcttttattcctttactttcttaatagacttgctttcactgtactgt--aAAAAAAaaaaaagcacaatgtagaaaggaaactctcttcaatgaatagtgttggggaaagtgcatgaaaaagaatgaaattgcacacttattttatatcatatacagaaaattagctcaaaacggattaaagatttaaatgtaatatctgaaaccatgtaaatcctggaagtaaacatagggaaaaatctcctcgacattggtcataattggcaattttcttttgatataacaccaaagcacaggcaacaaaagtgaaaataaataaatgggactacatcaatcttaaaaggttttacacagcaaaggaaaccatgacaaaatgaaaagacaacctacggaatggaagaaaatatttgcaacccatatattttgataaggggttatttgaaaaaatataaggaattcacacaactcaatagtaaaaattaataaatatacatgaataacccaattaaaaataggcaaaggaccccaatggacttttttccccaaggaaggtatacaaatggccagccagcctatgaaaaggtgctcaacaccactaatcatcagagaaatgcaaatcaaaaccacaatgagatattgcctcataggataggatggctcttataaaaaaacgacaagagataacaagtgttggcgaaagcatagaggaaagagaacccttgtacactgttggttggaatgtaaagtggtataacctttacagaaaacagtatggaggttcctcaaaaaattagaagcagaact-accatacgattcagcaatcaggttagaaccttgaagagagatctgtgccccatgtttattacaacactattcacaatacccaagatatggaaacagcctaagtgtccagcaacagatgaatggataaataaaatacatataaacaatggactattagccattaaaaagaagtaactcctgtcctggataaacctggaggacattacgctaagtgaaataagccagacacagaaagacaagttttgtatgatctcacttatatgtgggatctaagagagtcaaactcataaaaacagatagtagaatggtggttgccaagggctgggggtggggaaaatgggaagctattaatcaaagggtgt-aactttcagttataagatgaacaaattctggagatttaatgtacagcataggtggtaatggatgtaataaatttgattgtgataattagtacacaatgtataaatatatgaaatcatcacattgtatgcattaaatatatacaatccttgtcaactatttt--aaaaaaatttttttaaaTGCCTAGGTCATAAGAATTCTGAGAATGAAATACAACAACATACATGAATGGACCTGCTACACAGAAGGTGCTAAATAGGTTTGTTTTGTTTTATTTTATTTCAACTCTGGCAGATGTAGACTTATTGGGAAAGAATATAGAATGCACTTGTGCACAAGGATTATCTATACGATGGTTAAATATCCTGCATACATGCCTTGTCATTTCTACTCCTCAGTCAATGGATAATAAAAGCAGAACCAGCCTTCTGGTGGTCACAAAACATTTTGACATGAGCAAGGCTGATCATGAgcaatctggcaatgtacatcccagagcgtgcatgccctttgacccacagctaccatgatgtcatgtccagcaattagtcctaaggagatgatcagagatgtgtaaagagatttcattctaacagcatcctctgtagtggtatatgtcaggggctggcaaaccatgtccagaggggcaggctgcatttagtccaccacctgtttttgtaaagtttatcagaacacagtcatgcccattcatttacaaattgtgtatggcttctttccctgcaacagcagagttaagtgttgcaacagaaatctatggcctgcagagtttaaaatatctaccctttggccttttataaaaaaagtttactgattcctggtgagtatattaagaaaaagttagaaaaacctaaatcttcaagagtgg a score=30468.0 s hg17.chr17_random 913798 303 + 2618010 agaattagaaagtaagacatgttgtat--ataagacagacagtttg-----tgtgtgcgtttatttgtaaatatattattttgaaataatgttgtcgacatacgttgcaggtcttaaaaattgttcaatatat----agtgt-taatca--aaaaatggcaaactgtaaaatgtagacagaatgtgattgtgtattttgtgcatacaccaacagaaaagggtgctaggaaacctgtggaccaacatac-----taagtgtggctcttttgatggtggtatcatgga-----tttttaaaaatcttcttggttttctgtagattctga s panTro1.chr19 47449987 303 - 82489036 agaattagaaaataagacgtgttgtat--ataagacagacagtttg-----tgtgtgcgtttatttataaatatattattttgaaataatgttgtcgacatatgttgcaggtcttaaaaattgttcaatatat----agtgt-taatca--aaaaatggcaaattgtaaaatgtagacagaatgtgattgtgtattttgtgcatacaccaacagaaaagggtgctaggaaacctgtggaccaacatac-----taagtgtggctcttttgatggtggtatcatgga-----tttttaaaaatcttcttggttttctgtagattctga s canFam1.chr9 30237845 288 + 53642819 AGAATTAGTAAGCAAAATGTGCTATATTCACAATGAAAACAGTTTGAAGCCCGTGGGGAAAGAGTTGTG-------------GAAATACTTCCATGGACATG-------------AAAAACTGTTCACTATGTATTAAGTGTAGAAACAACAAAAAAAGAAAGCTTAAAAGTGTTTTTGGAGTGTGATGCCATGATCTTTGGGTACCATACCC----------CTTGAAAATATATACACATATACACACACACACACATTTATTTCCTGGTAATGAGATTATAGGCACATTTTTTTGCCATCAATTTG---TTCTATACTTTCTGG a score=0.0 s hg17.chr17_random 914101 25 + 2618010 ctttcctgtcatgagtatgaataaa a score=741.0 s hg17.chr17_random 914101 10 + 2618010 ctttcctgtc s panTro1.chr19 47450290 10 - 82489036 ctttcctgta a score=3932.0 s hg17.chr17_random 914111 15 + 2618010 atgagtatgaataaa s panTro1.chr19 47450300 15 - 82489036 atgagtatgaatAAA s mm5.chr11 38312606 15 - 121648857 ATGAGTATGGATAAA a score=46395.0 s hg17.chr17_random 914126 195 + 2618010 tatgtatttcttGAGAAATGTGAA-AATAACTTTATCTTCCCAGATTTCTCATAATTGAAAATGTTGGAATAAATGGTCCTGGGACAGATCTTTCCATTGAGAAGGGCAGAA---GGGAAACCCTGGGGATTCAGCTGGGTTTCTGTTGCATTTCT-AGTAA-CACACAGTTGTGAAAGGCCAGTG---TTGGC-----------CATTCCCCAG s panTro1.chr19 47450315 195 - 82489036 TATGTATTTCTTGAGAAATGTGAA-AATAACTTTATCTTCCCAGATTTCTCATAATTGAAAATGTTGGAATAAATGGTCCTGGGACAGATCTTTCCATTGAGAAGGGCAGAA---GGGAAACCCTGGGGATTCAGCTGGGTTTCTGTTGCATTTCT-AGTAA-CACACAGTTGTGAAAGGCCAGTG---TTGGC-----------CATTCCCCAG s mm5.chr11 38312621 184 - 121648857 TATGTATTCACTGAGAAATTCAAATGTTAACCACA---TCCAAAGGTTCTTATACTTGAAAATG---------ATGGTTCTGAGACAGATCTTTCCCTTGAGAAGGGCAG-----GGGAAATCACAAGGATGCAGCTAGATTTCTGCTGCATTTTT-AGTAACCACACGATTGGGGAA--CCATTGGTCTTGGC-----------CAATCACCAG s canFam1.chr9 30238133 201 + 53642819 TATATATTCCTTGAGAAAGACGAA-AAAA--------TTTTCAGGATTCTCATACTTGAAAATGTTGGGATGAAGGGCCTCAGGACCAACCATTACCTCCAAAGGGCAAGAACGCAGGGAGGCTTCAGCATTCAGTTGTATTTCTCCCACATTTCTGGGTGACCACACAACTGTGAAAGTTCAG-----ATAGCACCAAACTTCTCATTCTCCTG a score=30232.0 s hg17.chr17_random 914321 179 + 2618010 -GACAGTCTGGGGTAGAGGAGGTCAGGATTTAACTACCTGAGGGTCCGGGGAACAGATGTGGCCACAGTCCTTCCTGACTCACTGTTTTCCCTTC-CACAGTCCCCGTCTTCTCTTCACTGATGCACACAGAAGCCTGACCAGAGGAGAGATTTAGTTTTCATCTGAGGATTATCTGTTAT s panTro1.chr19 47450510 179 - 82489036 -GACAGTCTTGGGTAGAGGAAGTCAGGATTTAACTACCTGAGGGTCCGGGGAACAGATGTGGCCACAGTACTTCCTGACTCACTGTTTTCCCTTC-CACAGTCCCTGTCTTCTCTTCACTGATGCACACAGATGCCTGACCAGAGGAGAGATTTAGTTTTCATCCGAGGATTATCTGTTAT s canFam1.chr9 30238334 168 + 53642819 GAACAGGC-AGGGTGGAGGAAGTCAGGACTTACCTATTTGACGGT--GGGGAGCAGATGTGATCATGATCC-TCCTGATGCACTATTTTCCCTTCTCACAGCCCCTGACTTCTCTGCACTGGTGCTCACAGATGCCTGATAAGAGGAAAAGCTCAGTTCAAAGCTTTGGAGT--------- a score=3180.0 s hg17.chr17_random 914500 16 + 2618010 GTTGCAGTTCTGAAAT s panTro1.chr19 47450689 16 - 82489036 GTTGCAGTTCTGAAAT s mm5.chr11 38312805 12 - 121648857 GTGGTAGTTCTG---- s canFam1.chr9 30238502 16 + 53642819 CTTACAATTCCAAAAT a score=13885.0 s hg17.chr17_random 914516 60 + 2618010 TCCCATAATGTTTAAGCTAGAACACAATTGATTTCATTATCTCCAAAGTGTATGGCTTGA s panTro1.chr19 47450705 60 - 82489036 TCCCATAATGTTTAAGCTAGAACACAATTGATTTCATTATCTCCAATGTGTATGGTTTGA s mm5.chr11 38312817 50 - 121648857 -----TAATGTTTAAGTAGG-----AGTTCATGTCACTATATCTAGTGTATGTAACTTAA s canFam1.chr15 26609132 56 + 67237905 TCTCATAATTTTTAAACTAGAA---TATTCATTT-GCTATATCTGGTATATGTGGCTTGA a score=91.0 s hg17.chr17_random 914576 1 + 2618010 T s canFam1.chr15 26609188 1 + 67237905 T a score=91.0 s hg17.chr17_random 914576 1 + 2618010 T s panTro1.chr19 47450765 1 - 82489036 T a score=25326.0 s hg17.chr17_random 914577 141 + 2618010 AGAAATAGATTCCATTATGTAGCACCTTAAATCCAGATAAAACGTAAAGAATTTCTATTCCATGTTTGTATGATCAATGTTAATAATATAAGAAAATCTAAAAAGTAGCTATATCCTATATTACA---GTATGA-------AATAAATATG s panTro1.chr19 47450766 140 - 82489036 AGAAATATATTCCATTATGTAGCACCTTAAATCCAGATAAAACGAAAAGAATTTCTATTCCATGTTTGTATGATCAATGTTAATAATATAAG-AAATCTAAAAAGTAGCTATTTCCTATATTACA---GTATGA-------AATAAATATG s mm5.chr11 38314279 99 - 121648857 AGAAATGAGCCCTACATTACAACGTCTTTCATCTAGATAAAAC----------------------TTATATA--TAATGTT-ATAATATAA-----------------CTATACATTATATTATA---TAGTTA-------CGGTATTATG s canFam1.chr15 26609189 151 + 67237905 AGAAATACATTTCATTTTGTAGTGTCTTGAATCTAGATGAAATATGAGGAATTTCTATTCAATATTCCCATGACTGATATTCATAACACTCGGAAATGTAAGAAGTAGCTATTACCCATATTATATAGGTATGAATATATGAATAGATATG a score=16646.0 s hg17.chr17_random 914718 122 + 2618010 CT-GAATGATTTGTTTTGGGGGGTGGAAAGGTGTAAGACTGAGGAGGGTGCCTGTGGGGAACACTAATAGGAGTCCTTTCTTAAGGGTTGAGTTTTATATATGTCTTTTAAAATAGATGATAT s panTro1.chr19 47450906 122 - 82489036 CT-GAATGATTTGTTTTGGGGGGTGGAAAGGTGTAAAACTGAGGAGGGTGCCTGTGGGGAACACTGATAGGAGTCCTTTCTTAAGGGTTGAGTTTTATATATGTCTTTTAAAATAGATGATAT s mm5.chr11 38314378 116 - 121648857 ATAGGATTATTCTTGTGGAAAAAAGAAAGGGTATAGGAAGGAGTCAGGTGTCTGTGGG-----TTAATCAGAATCCTTCCT--AAGCCTCAGATTTAGATACATTGTTTTAATTAGATGATAT a score=22214.0 s hg17.chr17_random 914840 161 + 2618010 CATTAATAAATTA-TCTGTGGGCATCATGAAAAAAGTGTATAACGTACAACTTTATGAGCTTGAC----AGTTGGTGAAACACTTTTCTGTT-TAAAATTTTATTTGAC-----CCTCCCCAAAAGAAATGTTTATTTATGAGTATTAGGATAGTTCCAGTAGTAATGCCTC s panTro1.chr19 47451028 161 - 82489036 CATTAATAAATTA-TCTGTGGGCAACATGAAAAAAGTTTATAATGTACAACTTTATGAGCTTGAC----AGTTGGTGAAACACTTTTCTGTT-TAAAATTTTATTTGAC-----CCTCCCCAAAAGAAATGTTTATTTATGAGTATTAAGATAGTTCCAGCAGTAATGCCTC s mm5.chr11 38314652 164 - 121648857 CCTTAATAAATTATTTTGTGGGCATCATGAAAAAA------AGTGTATGGTTCTGTAACCACAGCCTTTAGCTAGTGGACTAGTTCTCTGTTGCAAGGCTAAATATAACATCTTCCTGTCCCAGAGAAATGTCTACCTATGAGGGTTACAGTAATTCTGGAA--CATACCTC a score=14886.0 s hg17.chr17_random 915001 163 + 2618010 AAAAGAACCAGGAGGAatagtgttgtctaaaatgtggactcaggagccagactgcctggctgtgcaactagccttgtcacttcctagatatgtggtaagttaattaacttctcagtgttcttatctgtagaatggggataatcataatatacatctcagggtt s panTro1.chr19 47451189 163 - 82489036 AAAAGAACCAGGAGgtatagtgttgtctaaaatgtggactcaggagccagactgcctggctgtgcaactagccttgtcacttcctagatatgtggtaagttaattaacttctcagtgttcttatctgtagaatggggataatcctaatacacatctcagggtt a score=21981.0 s hg17.chr17_random 915164 157 + 2618010 atattaaaaattgaaaaagttaattttgtaaagcacttagaataatatctggcaaataaaattg---tttataaaagtAAACCCTATAAAAGTGTTTACTCATTAAATACAATAATCTGAAACCATTAGTGATTTAaacatttgtggc-ggacttggcaat s panTro1.chr19 47451352 157 - 82489036 atattaaaaattaaaaaagttaattttgtaaaggacttagaatgatatctggcaaataaaagtg---ttcataaaagtAAACCCTATAAAAGTGTTTACTCATTAAATACAATAATCTGAAACCATTAGTAATTTAAACATTTGTGGC-TGacttggtaat s mm5.chr11 38314963 158 - 121648857 ACATTAAAGACCAAAGAAGTAAATCTCACAAAGCATCTAGTACAGAGCCTGGAACATAAGTGTTTCCTTTGTAAAAGTACACTCAAT-AAAGTTCTTACTT-TTAAATACAATGACTGGAAACCGTCTGTGACCC-AGCATTTGCTTCTTGGTTTGATAAC a score=13762.0 s hg17.chr17_random 915321 60 + 2618010 atttatgaaaataaatactgtatttataatctttgacctt---attttactcctaggaattta s panTro1.chr19 47451509 60 - 82489036 atttatgaaaataaatactgtatttataatctttgacctt---atttgactcctaggaattta s mm5.chr11 38315121 43 - 121648857 ATTTATAA-----------TTATTTATAAT------TACA---ATTTCATTTCTAAGAATTCA s canFam1.chr9 30232849 58 + 53642819 ATTTATGAAAACaa-----atattcataacttttgaccttataatttctctcctaggaattta a score=6615.0 s hg17.chr17_random 915381 49 + 2618010 ttgtccagcaaacattttcacaggcagacaaaaatattcctataaattc s panTro1.chr19 47451569 45 - 82489036 ttgtccagcaaacattttcacagg----caaaaatattactataaattc s canFam1.chr9 30232907 43 + 53642819 ttctcaaggaaccatttccacaggtgcacaaaaa------tataaaatc a score=19575.0 s hg17.chr17_random 915430 84 + 2618010 atgtttattacatcaatctgtgcaa-aac--gaataaacagacaattaaaatagccatcaaaaggagtattgattaaatgaatgata s panTro1.chr19 47451614 84 - 82489036 atgtttattacatcaatctgtgcaa-aat--gaataaacagacaattaaaatagccatcaaaaggagtattgattaaatgaatgata s mm5.chr11 38316224 83 - 121648857 ATGTTCACTACAGCAGCCAGCACAATAGC--AAAATGTCAAGCAAATGACATGGCCAT--AAGCGGTTATTGGTTAAGTGAATTACA s canFam1.chr9 30232950 86 + 53642819 acattcattacagcgatctacacaatagcagaaaatgtaaagtaaatgaaatgactgtc-aaaagggcattaggtaaatgaattatA a score=300.0 s hg17.chr17_random 915514 1 + 2618010 g s panTro1.chr19 47451698 1 - 82489036 g s mm5.chr11 38316307 1 - 121648857 G a score=13142.0 s hg17.chr17_random 915515 41 + 2618010 taaatccattcattagtaatcacattatcgaaaaagaatga s panTro1.chr19 47451699 41 - 82489036 taaatccattcattagtaatcatattatcgaaaaagaatga s mm5.chr11 38316308 40 - 121648857 TAAATCCATTCACT-GAACTCATAAAATCCCCAAAGAATAA s canFam1.chr9 30233233 41 + 53642819 AAAAGTCACTCATTAGTAATCATATAACCGAAAAAGAATGA a score=1478.0 s hg17.chr17_random 915556 11 + 2618010 gacatatttat s panTro1.chr19 47451740 11 - 82489036 ggcatatttat s mm5.chr11 38316348 11 - 121648857 GGTTTATGCAT a score=2374.0 s hg17.chr17_random 915567 25 + 2618010 gtgacgtgggaagatccataactaa s panTro1.chr19 47451751 25 - 82489036 gtgacgtgggaagatccataactaa a score=68265.0 s hg17.chr17_random 915592 416 + 2618010 tgttaaatggtaaaaCATATAAAATGTTATGCCCAATAAAATACTTTCTGTGAGAGA------ATATGTTAATTTATGCAAGTGGCG--CCAATGTGGAGGGTTTATGCTAATTTCATTATACCTCAcagacagacctgggctctcccactcattatctatgtggcctggggtaagtcatttaactgctggaagcctcagcttcttcatctgtcaggcagtgataccct-gactactctgcagggtaactctgagatttcaacgtgatcatctcagaatatgcctggcaaacagtaggagctcaGAACTTGATTTTTTTTCCTACAGCAACTG---CTGTAGGGGATAGCAGCTAATGCATGAGGTTGGTAAATCCTTATATATATCAAATATTGTAGAAACATAACTACATGCTACTATTTTTTCAA s panTro1.chr19 47451776 416 - 82489036 tgttaaatggtaaaaCATATAAAATGTTATGCCCAATAAAATACTTTCTGTGAGAGA------ATATGTTAATTTATGCAAGTGGAG--CCAATGTGGAGGGTTGATGGTAATTTCATTATACCTCAcagacagacctgggctctcccactcattatctatgtggcctggggtaagtcatttaactgctgtaagcctcggcttcttcatctgtcaggcagtgataccct-gactactctgcagggtaactctgagatttaaacgtgatcatctcagaatatgcctggcaaacagtaggagctcaGAACTTGATTTTTTTTCCTACAGCAACTG---CTATAGGGGATAGCAGCTAATGCATGAGGTTGGTAAATCCTTATATATATCAAATATTGTAGAAACATAACTACATGCTACTATTTTTTCAA s canFam1.chr9 30233467 391 + 53642819 TTTTAAATTAAAAA--------------------AATGGGATACTTTGTA-GAGAGAATTGGTATATGTTAATGCATACAAATGAAGGCCCCTACCAGAGGGCCTGTGCTAATTTCATTTT--TTCACAGAC---CCTATGTAGACCc------tatctacgtggccatggctgagtcatttaactgcagtgagcctcagtttctccatttgtgtaacagtgatattttcaactgctctgcagggtaa--ctgagatttaaaatcaataatctcagaatctgcctggcaaatagcaggagctcaGAACTTGGTGTTTCTTCCCACAGTGACTGTGTCTTTTGGGGA-AGTAGTTATTGCATGAGGTTGGTAAATCTTCCTAGGGATCAAATATTGT--CAAGTTAAGGACATGCTACTATTTGTCAAA a score=26334.0 s hg17.chr17_random 916008 289 + 2618010 ACCCTCCCCCCACCC-ttttttttcccctgagacagagtctcactctgttgcccaggctggagtgcagtggcgccatctcggcttggctcactgcaacctctgactcccgggttcaagcgattcttgtgcctcagtctcccaagtagctgggattacaggcatgtgccaccatgcccaggtaatttttttggtgtttttaatagagatggggtttcaccatgttggccaggcgggtctccagctcctggcctcaagtgatccgcctgtctcagccccccaaagtgctggg s panTro1.chr19 47452192 290 - 82489036 ACCCTCCCCTCACCCtttttttttcccctgagacagagtctcactctgttgcccaggctggagtgcagtggcgccatctcggcttggctcagtgcaacctctgactcccaggttcaagtgattcttgtgcctcagtctcccaagtagctgggattacaggcatgtgccaccatgcccaggtaatttttttggtatttttaatagagatggggtttcaccatgttggccaggcgggtctccagctcctggcctcaagtgatccgcctgtctcggccccccaaaatgctggg a score=27644.0 s hg17.chr17_random 916297 190 + 2618010 TCAAACCCCTCATATCCAGTAA---------------AACAGCCTCACTGGGTCAATGGA----------TATCATGTGG-CTGCCTAACATTTTTACTTTATA---AAAGGTCTTCCTGAGGCCATTTGAAAGTATGAATAAAAACACCTTAAGATGAACAGGGCCACAGGTTTGCAT-GAGGCTTGTCAGTGGACCTCCAGGATGA-AGACCAAAGTGA s panTro1.chr19 47452482 190 - 82489036 TCAAACCTCTTATATCCAGTAA---------------AACAGCCTCACTGGGTCAATGGA----------TATCATGTGG-CTGCCTAACATTTTTACTTTATA---AAAGGTCTTCCTGAGGCCATTTGAAAGTATGAATAAAAACACCTTAAGATGAACAGGGCCACAGGTTTGCAT-GAGGCTTGTCAGTAGACCTCCAGGATGA-AGACCAAAGTAA s canFam1.chr9 30233864 217 + 53642819 TGGAATCTGTTGTAACTAATAAAATACAAAGCTGTTTAATAGCATCATTGAGTCAAAGGGGTTCTACTACTACCCTGTGGATTGCCTCTCATTTT---TTTGCATGTAACAGTCTTCCTGGGCCAATTTGAAAATACAAATCTAAACACTTATAGGTGCACA-GGCCCTGGGTTTGAATGGAGGCTTGTCAATGGGTCTGCAGACCCAGAGACCAAGGTAA a score=2307.0 s hg17.chr17_random 916487 26 + 2618010 CTGTGCAATTTCTAGTGGAATAATTT s panTro1.chr19 47452672 26 - 82489036 TTGTGCAATTTCTAGTGGAATAAttt a score=7816.0 s hg17.chr17_random 966518 89 + 2618010 ATCCCACGG-AACGGGCACAGATGCAGGCCCCTCCCTGGGCTGAGCACCTCCAGGGCCCTCACGAGAGGCCTCTCCTATCCTGATGGGGT s panTro1.chr19 82460607 90 + 82489036 ATCTCACGGGAACGGGCACAGGTGCAGGCCCCTCCCTGGGCTGAGCACCTCCAGGGCCCTCACGAGAGGTCTCTCCTATCCTGATGGGGT a score=5430.0 s hg17.chr17_random 966607 44 + 2618010 GGAGGGGCAGGAGGGA------TCCGAGGAGGCTGATACCTCTCCTCTCC----- s panTro1.chr19 82460697 44 + 82489036 GGAGGGGCAGGAGGGA------TCCGAGGAGGCTGATGCCTCTCCTCTCC----- s canFam1.chrUn 6319523 55 + 91062872 GGGGGGACGGGAGGGACGTTCCTCCGAGGGGGGCAGGGCCTGCGGCCACCGGTGC a score=100.0 s hg17.chr17_random 966650 1 + 2618010 C s rn3.chrUn 69913505 1 - 75822765 C a score=91806.0 s hg17.chr17_random 966651 637 + 2618010 CCAGGGTATTCGCCTTTCATCAGGGGACGGGGGCCCCTAAGCCTTTAATGCTGCAGGAA----TGGGTACATAATGTGGAATGTCGGTGCCGGCCGTCTGGCAGCAGTGACGCCATCCCCTGGGCCAGGCCGGCTCCCCAGCACTCTCCGGCCAGCGCCGCGGTTTCCCTTGCCTC--CCGTTCCTGC-----ACTTGCTGTAGCTGCGAGAGC-CGACG-GAGGCTGAGCC-GGGCAGCGCCAGCCCCGCCGAGCCTGAGGTGAGCCTGAGCCTTTGGCCTGGCAGCACGACCCACGGGAGGTGGACGA--GCTCGTCTGTGCGTCAGAAGTTCCAGTTTGTGCTGACTCAGGAGGACAGAGGCTCCGTGGGCTGGAACCCCGGACAGGAGAGGGTG--------------------TGTGAGCCCCGTCCCCTGCCCAGCCAGGAGGAAATCCCCCGCTCCGGTGGGTTTCGTC--GGTGTGATCGTGGTGCG---TTCAT-------GCT----------GCA----TAATCGGCTTCCTTGAGTAAACTGAGACACGCC----GATGACCAAGAGTTGGCCGGAACACGGGGGCAGGCTGCTCCTCCAGGGGTACACACTGGGGGCCAGGCGGGAGGGGACCCGGCCCCAGGACCTTGGGATTTGGCTGACTACGGGCAGGACCTCTCAGCCCTGCACC s panTro1.chr19 82460741 637 + 82489036 CCAGGGTATTCGCCTTTCATCAGGGGACGGGGGCCCCTAAGCCTTTAATGCTGCAGGAA----TGGGTACATAATGTGGAATGTCGGTGCCGGCCATCTGGCAGCAGTGACGCCGTCCCCTGGGACAGGCCGGCTCCCCAGCACTCCCCGGCCAGCCCCGCGGTTTCCCTTGCCTC--CCGTTCCTGC-----ACTTGCTGTAGCTGCGAGAGC-CGATG-GAGGCTGAGCC-GGGCAGCGCCAGCCCCGCCGAGCCTGAGGTGAGCCTGAGCCTTTGGCCTGGCAGCGCGACCCACGGGAGGTGGACAA--GCTCGTCTGTGCGTCAGAAGTTCCAGTTTGTGCTGACTCAGGAGGACAGAGGCTCCGTGGGCTGGAACCCCGGACAGGAGAGGGTG--------------------TGTGAGCCCCGTCCCCTGCCCAGCCAGGAGGAAATCCCCCGCTCCGGTGGGTCTCGTC--GGTGTGATTGTGGTGCG---TTCAT-------GCC----------GCA----AAATCGGCTTCCTTGAGTAAACTGAGACACACC----GATGACCAAGAGTTGGCTGGAACACGGGGGCAGGCTGCTCCTCCAGGGGTACACACTGGGGGCCAGGCGGGAGGGGACCCGGCCCCAGGACCTTGGGATTTGGCTGACTACAGGCAGGACCTCTCAGCCCTGCACC s mm5.chr11 121381265 616 + 121648857 CCGGAACAGTTGGCTTTC-TTGGAGAATGGGGTCTCCTGAGCTGTTAGTGCTTAAGAAAAGCGTGGTTATATAGTGTGAAATGGTAGT--CGGCCATTGTCCAG--------------CTCAGATTGGGACAGTTTCCAAGGGTTCTATGGCCAGTAGCA-GGCTTCCCCCTCTTC--TTTTTCCTGCTTTGGCCTTGGTGCAGCTTCAGAAAT-------AAGACAGAGCTAAGGTGGTGTCA-----------TCAGAGAAGGAAGAGCGTACCTGACCTGG----ATGTTATGCCAGAGGCAGACAA--GCTCTTAGATGAATC---AGTTCTCATTTATGCTGACTCAGGAGAACTGTGGTACCATGGGCTGGAA-CCCAGACAAGAGTGCATGAGAGAAACTGCCCATGCGCAGGTGAGCCTTGATCCCCACCCAGAAAGGAGAGAACCTGCCGCTGCTCCAGGATAGGTC--CACACGA-------GTG---TCCATAGCATTAGCT----------GCATGTTTACTTGGATTGTATAATTGTCTTGTGACCTGCATCG-GATGTTAAAGA-----CCAGAGCAGTGGGGTATAGTGCTGTTCCAGGGGCATATATAGGG---CATATGAGAGGTCA-----TCTCAGCATCTTGGACCCCAGCATGCTGGATGTGG---CTGCTTGCCCTGCATC s rn3.chrUn 69913506 619 - 75822765 CTGGGACAGTAGCTTTT--TTGGAGAATGGGGGCTCCTGAGCTGTTAGTGCTTAAGGAAAAGGTGGATATATAATGTGAAATGTTAGTGCTGGCCATTGTCCTG--------------CTCAGGTTGGGACAGCTTCCAAGGTTTCTATGGCCAGTGGCA-GGTCCCCCCCTCCCCATTTTTTCCTGTTTTGGCCTTGGTGCAGCTTCAGAAATGAGATATAAGGCAGAACTAAAGCAGTGTCG-----------GCAGAGAAGGAAGAGCGTACCTGACCCTG--GATGGTTATGCCAGAGGCAGACAA--GCTCTTAGATGAATC---AGTTCTCATTTGTGCCGACTCAAGAGAACTGTGGTGCCATGGGTTGGAA-CCCAGACAAGAGTACATGAGAGCATGTGCGTATGTGCATGTGAGCCTTGATCCCCACCCAGAAAGGAGAGAACCTGCTGCTGCTCCAGGATAGGTCCTGGAGTGTCTACAGCGTTAGCTTCAT-------GTTTACTTGGATAGCA----TAGTTGCCT-------------TGTGACCCACATCACAATGGAAAAGA-----CCGGAGCAGTGGGGTATAGTGCTGTTCCAGAGGCGTGCCTAGGT---CATATGAGAGGTGA-----CCCCAGCATCTGGGATGCTGG--------ATTTGG---CTGCTAACCCTGCACC s canFam1.chrUn 6319578 395 + 91062872 CCCGGGCTGCCTGCTTTCATCGGG----GGCGGCCCCTAAGCCCTTAATGCCCGAGGAA----TGGGCACGTAATGTGGAATGTCCGCACCAGCCATCTGGCGG------------------------------------------------CTGTGGTG-------------CCC---------------------------------------------GCGG--------GGGGAGCGCCC---GGGATGGGCCGGGGCTGGGAC----------GTCGGGCGTCGGGCCCCGGGTGGAGGGGCCGCCTGCCTCCCGCTGACTCATAGCATCTAGTTTGTGCT-------GAGGACGGAGACGCTC-----------CCCGG---GGGGGACGCG--------------------TGTGAGCC-CGGGCGCTGCC--GCCGGGA------------CTGTCGTGAGGGCTGTC----------------ACC---TTCGT--------------------GCA------CTTGCC--------------TGGGAGAGGCA----G---------------CCGCTCCCCGGGCGCAGG--------CCAGGGGCG------GGGGGCCGGG---------------GCTCGGGGTGTAG----CCATCACACCGCGGGCGG------TGGGACCCGCACC a score=0.0 s hg17.chr17_random 967288 18 + 2618010 AGCCGCCTCTGCAGGCGA a score=1391.0 s hg17.chr17_random 967288 10 + 2618010 AGCCGCCTC----------T s panTro1.chr19 82461378 10 + 82489036 AGCCGCCTC----------C s mm5.chr11 121381881 20 + 121648857 TGCTGCCCCTCTGTCCTTGC s rn3.chrUn 69914125 10 - 75822765 TGCTGCCCC----------T a score=1062.0 s hg17.chr17_random 967298 8 + 2618010 GCAGGCGA s panTro1.chr19 82461388 8 + 82489036 GCAGGCGA s mm5.chr11 121381901 8 + 121648857 TCAGGATA a score=1609.0 s hg17.chr17_random 967306 7 + 2618010 CACGGAC s panTro1.chr19 82461396 7 + 82489036 CACGGAC s mm5.chr11 121381909 7 + 121648857 TCTGGGC s canFam1.chrUn 6319973 7 + 91062872 CCAGGAC a score=0.0 s hg17.chr17_random 967313 4 + 2618010 GCCT a score=-1062.0 s hg17.chr17_random 967313 1 + 2618010 G----- s panTro1.chr19 82461403 1 + 82489036 G----- s mm5.chr11 121381916 6 + 121648857 AGTGGC a score=881.0 s hg17.chr17_random 967314 3 + 2618010 CCT s panTro1.chr19 82461404 3 + 82489036 CCT s mm5.chr11 121381922 3 + 121648857 ACT s rn3.chrUn 69914166 3 - 75822765 ACT a score=7603.0 s hg17.chr17_random 967317 26 + 2618010 TCCTTGGATGCTGA-GGAAACCCCGCA s panTro1.chr19 82461407 26 + 82489036 TCCTTGGATGCTGA-GGAAACCCCGCA s mm5.chr11 121381925 27 + 121648857 ACCTCTGATGCTTAGGGAAATCTGGCA s rn3.chrUn 69914169 27 - 75822765 ACCTCTGATGCTTAGGGAAATCTGGCA s canFam1.chrUn 6319980 16 + 91062872 CCCCTGGGT-----------CCCCGCA a score=0.0 s hg17.chr17_random 967343 57 + 2618010 GGATGGGGGTGGCAGAGAGTGGTCAGGTGCAGCTTCCGGCCGTGCCCAGACCTGTGC a score=3925.0 s hg17.chr17_random 967343 13 + 2618010 GGATGGGGGTGGC s panTro1.chr19 82461433 13 + 82489036 GGATGGGGGTGGC s mm5.chr11 121381952 13 + 121648857 GCATAGTGAAGGC s rn3.chrUn 69914196 13 - 75822765 GAATAGTGAAGGC a score=2409.0 s hg17.chr17_random 967356 44 + 2618010 AGAGAGTGGTCAGGTGCAGCTTCCGGCCGTGCCCAGACCTGTGC s panTro1.chr19 82461446 44 + 82489036 AGAGAGTGGTCAGGTGCAGCTTCCGGCCGTGCCCAGACCTGTGC s mm5.chr11 121381965 13 + 121648857 -------------------------------CCTACCTCTGACT a score=891.0 s hg17.chr17_random 967400 6 + 2618010 CCAGCA s panTro1.chr19 82461490 6 + 82489036 CCAGCA s mm5.chr11 121381978 6 + 121648857 ACAGAT s canFam1.chrUn 6319996 6 + 91062872 CCACCA a score=0.0 s hg17.chr17_random 967406 50 + 2618010 GACCTGGCTGAGGCCGTGTGGGGCTGCTGTTTGCAGGCCAGGGAATCCGG a score=1159.0 s hg17.chr17_random 967406 19 + 2618010 GACCTGGCTGAGGCCGTGT s panTro1.chr19 82461496 19 + 82489036 GACCTGGCTGAGGCTGTGT s mm5.chr11 121381984 14 + 121648857 GACCTCTCTTTGCC----- a score=1958.0 s hg17.chr17_random 967425 31 + 2618010 GGGGCTGCTGTTTGCAGGCCAGGGAATCCGG s panTro1.chr19 82461515 31 + 82489036 GGGGCTGCCGTTTGCAGGCCAGGGAATCCGG s mm5.chr11 121381998 12 + 121648857 ----CTGCTGTGTA---------------GG s rn3.chrUn 69914242 31 - 75822765 GAGGCTGACCTCTCTTTGCCCAGCTATGTAG a score=25446.0 s hg17.chr17_random 967456 276 + 2618010 GAAACGGGCACCGTTCAGTGGCTTGGGGAATGTGGGTGGGG---GCTGTCTGGTTCTGGGGTACACAGACCCGAGACAGTCCAGGCAGGTCCCAGGATTCCAGTCTGTTCTTCAGCTTCTCCCAGGGCTGTGTGTCAGATGCTCCTGG-CTT----GGCCACATCTGTGCTTGGGGTTTGGGGTGCAGGCTCTGTGTAAGGTCCCCCAATGCAGGCCCCAGTGAGCAGGTGCCCAGGGCCGGGCAGCAGCATTGTGGACACAGGCAGTGGGAGGGGAGG-------GGATG s panTro1.chr19 82461546 276 + 82489036 GAAACGGGCACCGTTCAGTGGCTTGGGGAATGTGGGTGGGG---GCTGTCTGGTTCTGGGGTACACAGACCCGAGACAGTCCAGGCAGGTCCCAGGATTCCAGTCTGTTCTTCAGCTTCTCCCAGGGCTGTGTGTCAGGTGCTCCTGG-CTT----GGCCACATCTGTGCTTGGGGTTTGGGGTGCAGGCTCTGTGTAAGGCCCCCCAGTGCAGGCCCCAGTGAGCAGGTGCCCAGGGCCGGGCAGCAGCATCGTGGACACAGGCAGTGGGAGGGGAGG-------GGATG s mm5.chr11 121382010 207 + 121648857 AGAAC-----TTGTT--GTGGGGTGACCAGCAAGGGTGAGA--TTCTGTTTGGTTCAGGAG---ACAGGT-----ACAGCTCGGGTGTGTCCT--GGTTCCATTCCATCCT--------------GGTGG----------GCTCATGATCTT----GGTCATTGCTGTG-----------------GAACTCTGGGAGGGGGTGTCAAGTG--------AGGGGGTTGGTGGCCA--------CAGTGGCGTTTCAGACACACAC---TGAAGAGGAGG-GCATCAGGATA s rn3.chrUn 69914273 206 - 75822765 GAAAA----ATGACT--ATGGGGTGACCAGCAAGGGTGAGA--TTCTCTCTGGTTCAGGGG---ATTGGT-----ACAGCTGGGGTGTGTCCT--GGTTCCATCCT-------------------GGTGG----------GCTCGTGG-CCTTGGCGGCCATTGCTGTG-----------------GAACTCTGGGAGGGGGTGTCAAGTG--------AGGGGGTTGGTAGCAA--------CAGTGGCATTTCAGACACACGC---TGAAGAGAAGG-GCAGCAGGATA s canFam1.chrUn 6320002 208 + 91062872 GGAGCCTGCGCTGTCCAGGGGCCAGGGGCGGATGGCCGGGGGGCCCTGCCTGGTTGTAGGG-------GC-----GCAGACCGGCC---TCCT--GCTCCCTG----------------------GGTCG-------------CCTGG-GGC----AGCCACATCCACG------GTTTGGGGTCTGGGGTCTACGCAGGTTCCTGGAGCC--------CGTGAGGTGGAGG--A--------CGGGCCCCTCCCTTACAGCTGCGTTGGATGAGCAGGGGCAG--GGATG a score=-17765.0 s hg17.chr17_random 967732 180 + 2618010 CTGCCTTGATGCTGATCATGAGCACGTGGTGCCGTCCCTGGCTCTCCAGGACGCCGGAGT----CCTGCAGCGTCTCAGGGGCCTCAACGCCTCCCCCCTTTAAAATCCTGCCC--CTGGCTGAGCCCGTAGGTGAATGAC-CAGCTCGGCGGGC-----ACAGAGCCCCTGCCGATGAGCCCC-CTCCAGGA s panTro1.chr19 82461822 181 + 82489036 CTGCCTTGATGCTGATCATGAGCACGTGGTGCCGTCCCTGGCTCTCCAGGACGCCAGAGT----CCTGCAGCGTCTCAGGGGCCTCAACGCCTCCCCCCTTTAAAATCCTGCCC--CTGGCTGAGCCCGTAGGTGAATGAC-CAGCTCGGCGGGC-----GCAGAGCCCCTGCCGATGAGCCCCTCTCCAGGA s mm5.chr11 121382217 154 + 121648857 CT-TTTTGTTGC--------------TATTGCTGTCAGTGGCTCATT-GGAC-TCAGGGTGGAGCCTGCTGCTTCTGA-GCGTCTCTACTTATCCTCTCT---AAATCCTGCTCTGCTTGTT--GCTAATAGGCTTGAGACGCTGCTTGG---------------GGCCCCACCGCTCAGGTCC-ATTTGCTA s rn3.chrUn 69914479 151 - 75822765 CT-----TTTGC--------------TATTACTGTCACTGGCTCATTGGGCTCACAGGGTGGAACCTACTGCTTCTGA-ACGTGCCTACTTATCCTTCT----AAATCCTGCTCTGCTTGTT--GCTAATAGGCTTGAGACGCTACATGG---------------AACCCCATTGCTCAGGTCC-ATTTGGTA s canFam1.chrUn 6320210 82 + 91062872 CC-----------------------------------------CACGGGGTGGGCAGGTG-------------------GGG----------------------------GCCC--CCGGCT--------AGGTTTGGGGGTGGGTCTGGAGGGC-----GGGGGG-------TGAGCAGCCAC-GTTCACCA s danRer1.chr24 22250385 180 + 23152154 CTGCGTCAAGCCTGATCCACACTGGGGTGGGGCTCAGCTGTATCTGGAGCGCGATGGAGT----CCTGGAGCTTCTGGTGGGAGATGAGACCTCCACC-----ACACCCGGCCCAGCCCAT---GTACGCTGCTTTAGTGCCCTGCCCGGAGAACGACCTGCACTGTTCCTGCAGGCCACACCG-CACCGGGA a score=1379.0 s hg17.chr17_random 967912 22 + 2618010 GCCTCAGAGTTTGGAGAAGTCC s panTro1.chr19 82462003 22 + 82489036 GCCTCAGAGTTTGGAGAAGTCC s mm5.chr11 121382371 22 + 121648857 GACTCAGGGTTTGGGCATGCCC s rn3.chrUn 69914630 17 - 75822765 GA--CAGAGTTGGTGTATG--- s canFam1.chrUn 6320292 13 + 91062872 G---------TGAAAGAAGCCC a score=0.0 s hg17.chr17_random 967934 45 + 2618010 TTGATGGGTGGGAGGGATGGGTGGAAAAGTGTGGAAGATAATTCT a score=1100.0 s hg17.chr17_random 967934 15 + 2618010 TTGAT-------GGGTGGGAGG s panTro1.chr19 82462025 15 + 82489036 TTGAT-------GGGTGGGAGG s mm5.chr11 121382393 22 + 121648857 CTGATGGTGTGAGGGTGGAAGG s rn3.chrUn 69914647 5 - 75822765 ------------GGCTG----- a score=-256.0 s hg17.chr17_random 967949 3 + 2618010 -GAT s panTro1.chr19 82462040 3 + 82489036 -GAT s rn3.chrUn 69914652 3 - 75822765 TGA- a score=1238.0 s hg17.chr17_random 967952 27 + 2618010 GGGTGGAAAAGTGTGGAAGAT--AATTCT s panTro1.chr19 82462043 27 + 82489036 GGGTGGAAAAGTGTAGAAGAT--AATTCT s mm5.chr11 121382587 29 + 121648857 TGGTGGTCATGTCTTGAAGCTGAAGGAAG s rn3.chrUn 69914655 26 - 75822765 TGGTGTGAGGGT-TGAAAGCC--GTGTCT a score=2718.0 s hg17.chr17_random 967979 4 + 2618010 CATT s panTro1.chr19 82462070 4 + 82489036 CATT s mm5.chr11 121382616 4 + 121648857 CATT s rn3.chrUn 69914681 4 - 75822765 TGTT s canFam1.chrUn 6320305 4 + 91062872 CATT a score=1079.0 s hg17.chr17_random 967983 19 + 2618010 ATTTCCTGGAAGTAGAGGA s panTro1.chr19 82462074 17 + 82489036 ATTTCC-GGAAG-AGAGGA s mm5.chr11 121382620 19 + 121648857 GTGCCCTGGAGGCTGAAGA s rn3.chrUn 69914839 15 - 75822765 ATGTCT-TGTGGTGGA--- s canFam1.chrUn 6320309 19 + 91062872 ATGTCCCGGAGACAGAAAA a score=33877.0 s hg17.chr17_random 968002 634 + 2618010 ----GAGGGGCTGA---------TTTTTCCAAGGCGTCCCATCTCTCGTCC----ATCTTTGGCTTCCTGCTTGGTGCCTTCTCTCCGGCCACTGTAATTTTC--------ATTT--------TAACCATCTCTGGGC-TTGTGGAGAGGAAGGGTGTGGCCCCCGCCAGCTTCCTCACCAGGAAGAGGGAGGGAGAA----AGGGAGGCAGGGGGAAGGGCAGGGGCTATATGGGGCCAACACCCCCGGGGCACCCCAGCAATGGACTGCAGCCTGGAGTGCGGCCGCAGCGCGACGGTGATGATGGTGGCCTTGAGGGGAGCCTTGGGAGCTCAGCCTTGGG----TCCTCGAGCCCACTGGAGCCCACCCTCCACCCCTACCCACTGCTCCCTGT-TCTTGGCTCCTCTGAAAGCACCTTATCCCCGTCACCGGCTCCTCTAAAAGCAGCGTGTCCCCCCGCTACCCCGTCACCACCTGTGTGGGAGACCCAGTAATCGTGGCCACAGAGGTTTCC-----CGTCGGAACTGTGTGAGTCCCTCTGGCTGTCCTTACCTGGGCAGTCCTGC---CGGAC-CGGTCGGTGTCTGTCA-----TTCTCAGCCTCTCCTCGGAACCAGCCGGTCCTGC-----------CTCTCTACTTAACACCTGCCGTGC--AATCTAAGTCCCCGCAGCAG--CGTCCCCAA-- s panTro1.chr19_random 595279 636 - 57627672 ----GAGGGGCTGA---------TTTTTCCAAGGCGTCCCATCTCTCGTCC----ATCTTTGGCTTCCTGCTTGGTGCCTTCTCTCCGGCCACTGTAATTTTC--------ATTT--------TAACCATCTCTGGCC-TTGTGGAGAGGAAGGGTGTGGCCCCCGCCAGCTTCCTCACCAGGAAGAGGGAGGGAGAAAGATAGGGAGGCAGGGTGAAGGTCATGTGC--TGTGGGGCCAACACCCCCGGGGCACCCCAGCATCGGACTGCAGCCTAGAGTGCGGCCGCAGCGCAACAGTGATGATGGTGGCCTTGTGGGGAGCCTTGGGAGCTCATCCTTGCG----TCCTCGAGCCCACTGGAGCCCACCCTCCACCCCTACCTACTGCTCCCTGT-TCTTGGCTCCTCTGAAAGCACCTTGTCCCCATCACTGGCTCCTCTAAAAGCAGCGTGTCCCCCCGCTCCCCCGTCACCACCTGTGTGGGAGACCCAGTAATCGTGGCCACAGAGGTTTCC-----TGTCGGAACTGTGTGAGTCCCTCTGGCTGTCCTTACCTGGGCAGTCCTGC---CGGAC-CGGTCGGTGTCTGTCA-----TTCTCAGCCTCTCCTTGGAACCAGCCGGTCCTGC-----------CTCTCTACTTAACACCTGCCGTGC--AATCTAAGTCCCCGCAGCAG--CTTCCCCAA-- s mm5.chr11 121382642 505 + 121648857 ----AAGGTCGTGG---------TCTTTGGAG----------CTCTGGCCA----GTTTCTGCCTTGGTGGTT---------TCTCAGGCCACTGTGATTTTCTTAGGATTATTTTTT----ATAATCCTCTCTCAAC-CTTGGGTAAAGAACAGTGTGGTCTTCACTGACTTCCTTGCAAGGATGAATGGTTCAGAG----A---------------------------------------ACCCTTTGGTCACATTGTCCTTTGGGTGGCACCTGG------------------------TAGTGGTGATCATTGAAGAAGCCCAGG--------CCTTAGC----TCCT------------AGGCCACTCTGC-------CCAAGTGTGTCGTGCATCTCTGGTCCTGTTAAACCACTGTAC-----TTACCGCCTATCATAA------------------------------------------------GGTATTC-------TAGAGATTTTTTTTTGTTTTGGAACTATATGTGTCATTTTGGCTGTTTTTA-TTAGACAGTGCTGCCCACACAC-CAGTTGGTCTGGCTTACAGGGTCTGCAGACCTTCTTAGCATCCAGCTATTCTTGCCTGTGTTTGCTCTCCCTGCTTTCTGGCGACTGTGCCTAGGATGAGCCCTCACCAGAATCTGTCCCCAG-- s rn3.chrUn 69914854 496 - 75822765 ----AGGGTGCATA---------TTGTTTGGAGTCCTGTACCTTCTGGTCA----GTTCCTGCCTTGGTGGTT---------TCTCAGGCCACTGTGATTTTCTTGTGATTATTTTTTCATCGTAATCCTCTCTCAAC-CTTGGGTAAAGAATGGTGTGGTCTTCACTGACTCCCTTGCAAGGTTGGAGGGTTCAGAG----A---------------------------------------ACCCTTGGGTCACATTGTCCTTTGGGTGGCACCTGG------------------------TAGTGGTGATCATTGAAGAAGCCTAGA--------CCTTAGC----TCCT------------AGGCCACTCTGT-------CCAGGTATGTCTTGCTTTTCTGCTCCACTA----------------------GGGCCCTCAAAGGGCTTTGG---------------------------------------TGTA----------TAAGGTTTTTG-----CTTTGGAACTATATGTATCATTCTGGCTGTTCTCA-TTAGACAGTGCTGCCCATACAC-CAGTTAGTCTGGCTTGCAAGGTCTGC-----TTCCTAGCATCCAGCTATTCTTGCCTGTGTTTGCTCTTCCTGCTTTCTG--GACCGTGCCCAGGTTGAGCCCTTACCTGAATCTGTCCCCAG-- s canFam1.chrUn 6320328 456 + 91062872 GGAGGGAGAACTGAAATTTTTTTTTTCTACGGATCACTTCGTGTCCTGCCCTGGGTTCTCTGGCCCCGTAATT---------ACT-GGGTGATTAT--TTGTC--------ATCT--------GGCGCAGCTAGGGGCGTTTTGGGGTGGAAGGGAGTGGCCTCCCCCTGCGTCCTCCCTGGG---------GCAGCG----G-------------------CCGGGC--CATGGGGCC---ATCCTGGGGCCACACCAGCG-------GGTGCCTCA-------------------------------GCTC---------GCCCCGG---CCCGGTCTGGGGGTGTTCCCCGCGTCCCC---CAGCAGCGCTGCGCCC---------GCCACCTGT-CACCGGCTGCCCTGGCAG----GCGTCCCCATGCACGTTCCCCTTGGAAACTGTGT---CCACCGGGCATCCGGACCCG----------------GGCAGCC-----------------C-----CGCCG------------CCAGCCCAGCCTCTCC---CCTGCCAGGGC------CGGACGCGAGGGGTGCTGCACG-----CCCCC-----TTCCCTGGCACTG------CCGGC-----------CTCCCTG--------------------------GTCCCCACAGCAA-----CCCCTGGT a score=1511.0 s hg17.chr17_random 968636 30 + 2618010 CCCCACCCTG-CCGGTCCCTCCCACCCTGTT- s panTro1.chr19_random 595915 30 - 57627672 CCCCACCCTG-CGGGTCCCTCCCACCCTGTT- s rn3.chrUn 69915355 27 - 75822765 CTCAATCCTG-T---TTTCTTTATCCTCATT- s canFam1.chrUn 6320784 32 + 91062872 CACCGCCATGACCTATTTTCTTAAGCTCATTC a score=1202.0 s hg17.chr17_random 968666 5 + 2618010 CATGC s panTro1.chr19_random 595945 5 - 57627672 CATGC s canFam1.chrUn 6320816 5 + 91062872 CGTGC a score=360.0 s hg17.chr17_random 968666 5 + 2618010 CATGC s canFam1.chrUn 6320816 5 + 91062872 CGTGC a score=53361.0 s hg17.chr17_random 968671 312 + 2618010 TAGCTCCTGAGAGA-------CCTGCCTGAGATGTCCACACCCCAGCCCTCCCCCTCCGAGGAGGATGGACCAGGATTCCA----ACCCTTTGCCGACCCTCCCCA--------CCGCCCTGGAGACGAGGTGCAATGTGTCCGTGAGCAGCGCGTTCTG-----CAGCCTTTATGAGCCTGGCTCCTGTTAATAATTGTCTCCCGATTGTCTCCCGGCGTCCACCGGCGTCCACCCTGCATTCTCCGTGAAGGTGACTTCTGCTTTGTAAAGCTCAGAATCAGAACAGGGAGGTCTCCAGGGTGCTC-CTTACGAGCTCAGCTGTCGTT----GGGTCGT s panTro1.chr19_random 595950 302 - 57627672 TAGCTCCTGAGTGA-------CCTGCCTGAGATGTCCACACCCCAGCCCTCCCCCTCCGAGGAGGATGGACCAGGATTCCA----ACCCTTTGCCGACCCTCCCCA--------CCGCCCTGGAGACGAGGTGCAATGTGTCCATGAGCAGCGCGTTCCG-----CAGCCTTTATGAACCTGGCTCCTGTTAATAATTGTCTCCACATTGTCTC----------CCGGCGTCCACCCTGCATTCTCCGTGAAGGTGACTTCTGCTTTGTAAAGCTCAGAATCAGAACAGGGAGGTCTCCAGGGTGCTC-CTTACGAGCTCAGCTGTCGAT----GGGTCTT s mm5.chr11 121383179 239 + 121648857 TAGTTCCTTTTAGGAAT-TTTCCTGCCTGA-----------------------TTTCCAAAGTGG--------------------------------------------------CTCCCAGGAAATGCGATGTCA-GCACCTGCAATCTTCACATTCTATGTGTCAGTTGCTATGAACTTGAATCTGATTAATAATTCTTTTGAGATGGAGGTCC--------TTAGTATCCACATT-TAGTTTCTGCAAAAATG--------------AAGCTCAGAATTAGGACACGGATGGCTTCAGGTGGGCC----ACTAGCTCAGTTGCCACTCATGGTGCCAA s rn3.chrUn 69915382 239 - 75822765 TAGTTCCTTTTGTATGTGTTTCCTGCCTGA-----------------------TTTCCAAAGTGG--------------------------------------------------CTCCCAGGAAATGCAATGTCA-GCATCTGCAGCCAGCATATTCTA-----CAGCTGCTATGAACTTGAATCTGATTAATAATTCTTCCTAGATGGAGGTGC--------TTAGTATCCACATT-GAGTTTCCACAGAAACG--------------AAGCTCAAAATTACTTCAAGGATGCCTTCAGGTGGGCCACTAGCTAGCTCAGTTGTCACTCATGGCACCGA s canFam1.chrUn 6320821 296 + 91062872 GCATTCCAGGGGGA-------CCCTCCTGAGACGTCCACACCTCAGCCCCCTCCTCCGGAGGAAG------CGGGGTCCCAGCCGGCCCATTGGCCACCCCCTCCGCGTCTTCCCCCGCCAGGGAATGAGATTCGAAGCGCCCGAAACCAGCACATTCCA-----CAGCCTTTACGAGCCCAGCTCTGATTGATAATCGTTTCCAGATTGCTTCTC--------TTG------------GATTTTCCAAGGAGGCGACCTGCGCTTTGTAAAACCCACAACGACG--AGGGGAGACCCCAGGGCGGCACCTTGTTAGCTCGGCCGTGGT-----GGCTCGT a score=0.0 s hg17.chr17_random 968983 5 + 2618010 CTCCA a score=1746.0 s hg17.chr17_random 968983 3 + 2618010 CTC s panTro1.chr19_random 596252 3 - 57627672 CTC s mm5.chr11 121383418 3 + 121648857 CTC s rn3.chrUn 69915621 3 - 75822765 CTC a score=-624.0 s hg17.chr17_random 968986 2 + 2618010 C-A s mm5.chr11 121383421 3 + 121648857 CTT s rn3.chrUn 69915624 3 - 75822765 CTT a score=9506.0 s hg17.chr17_random 968988 208 + 2618010 GAGGCTTCTAGCAGGCGAGGCTGCAGGCACTGACCGTCCCCGGCCCCACA-------------CCCCTGCCGTCAGCCGGGTGAGCCAGGGCGGGGTACCCAGGGCACGTGAGGGCAGC-GTCTCCATCCTCCCCCT-CGGCCGTCCGCTGAGGTCGTGGGGCC-GTGACT-CACAGAGGGCGAAGTGCT--AGGGCTTGCATAC-------CCTCACGCGCCCAGGCCCCGGG s mm5.chr11 121383424 188 + 121648857 GAGGCTTGCA-----CATATTTGCAGG--------ATGCCTAGCCTGACAAAG----GGCCATCTCCTGCAGGTAGTT--GTGAGCCAGG--------CCAAGCACAACTGAAGGAGGTAGTCTCTG-----------CAGCTAGCAGCTGAGGTCCCTGTACCTATAACT-CACAGAGAGAGCAAAACTTAGGGACTTGTCTCA-------GGTTACACGTCCAGGCCTCGGG s rn3.chrUn 69915627 199 - 75822765 GAGGCTCTCA-----CAGGTTTGCAGG--------ATGCCTAGCCTGACAAAG----GGGCATCTCCTACAGGTAGTT--GTGAGCCAGG--------CCAAGGACAGCTGAAGGGGGTGGTCTCTACATGTTCTCTACAACTATCAGTTGAGGTTCCAGCACATATAACT-CACAGGGAGGGCAAAACTTAGGGACTTGTTTCA-------GGCTAAATGCCCAGGACTGGGG s canFam1.chrUn 6321117 172 + 91062872 GGAGCTCCTG----GCAGAGGTTCTGG--------GGGCC-------ACAGAACCCCGGCCGCCACCCTGCGGCGCCC--GCGA--CCGG--------CTA---------------------CTTTG------CCCT-TGGCGGTCGGCCGAGGTCCCGGGGCCTGTGTCCACGGAGAGGGTGCAGTGGT---GTGCTGACACCCCTTGGGGCGCTGCGTGGCCCGGCCCCAGG a score=-188.0 s hg17.chr17_random 969196 30 + 2618010 GTGGGACGCATGTGGCT---------------GGGCCTGTGGGCT s canFam1.chrUn 6321289 41 + 91062872 GCCTGCC----GTGGCTCCTCATCCCGGGCGAGGGCTCGTGGGAC a score=-245.0 s hg17.chr17_random 969226 8 + 2618010 ----------CCCCTGCC s mm5.chr1 185033870 8 - 195203927 ----------CCCCTACA s canFam1.chrUn 6321330 18 + 91062872 GCCAGGAGCACCGGTGAC a score=-1491.0 s hg17.chr17_random 969234 14 + 2618010 CCAGGGTGGGAGCC s mm5.chr1 185033878 14 - 195203927 TCAGACCTGTGCCC s canFam1.chrUn 6321348 14 + 91062872 GCTGGGAGGTCTCA s danRer1.chrNA 199262032 14 - 390413307 CCATCATGACACTC a score=3941.0 s hg17.chr17_random 969248 84 + 2618010 ------ACACACCC----CCGCCCCGCCCCAGGGTGGGAGCCACACACCCCCGCCCCGCCCCAGGGTGGGAGCCAC-ACACCCCCGCCCCGCCCC s mm5.chr1 185033892 84 - 195203927 ------TCACACAC----TCCTCCTACATCAGACCTGTGCCCACACACACTCCCCCTACATCAGACCTGTGCCCAC-ACACACTCCCCCTACATC s rn3.chr5 24430156 84 - 173106704 ------ACACACCC----CTCATCTGCCCCAGACCCATGCTAACACACCCCTCTTCTGCCCCAGACCCATGCTAAC-ACACCCCTCTTCTGCCCC s canFam1.chrUn 6321370 87 + 91062872 ------GCGTGTCCCTGGCCCTGCTGCCTCTGAGCGGAGCTGG-GCACCTCTGCCCC-CTGCGGGGCTGCGTGCGCGGCCTCCTCACTCCCCACC s danRer1.chrNA 199262046 79 - 390413307 AGAGACCCACAGCC----CCCGCCGCCGTCTGG-----------GCACGCACCCCCCGCCGCGCCCACCCAGCCTC-GCTCGGCCACCCCGCACC a score=2323.0 s hg17.chr17_random 969332 63 + 2618010 -AGGGTGGGAGC-CACACACCCCCGCCCCGC--------CCCAGGGTGGGAACCACACACCCCCGCCCTGCCC s mm5.chr1 185033976 63 - 195203927 -AGACCTGTGCC-CACACACACTCCCCCTAC--------ATCAGACCTGTGCCCTCACACACTCCCCCTACAT s rn3.chr5 24430240 63 - 173106704 -AGACCCATGCT-AACACACCCCTCTTCTGC--------CCCAGACCCATATTAACACACCCCTCATCTGCCC s danRer1.chrNA 199262125 67 - 390413307 GAGCGCGGCACAGCACGCACCCGCCGCCCCCTAACGCCGCTCAGACCTACAGCCGCAGAGCCCGATC------ a score=888.0 s hg17.chr17_random 969395 174 + 2618010 CAGGGTGGGAGCCACACACACCCCCG-CCCCACA-----------CACACACACCCCCGCC----------------------------CCGCCCCAGGGTGGGAACCACACACCCCCGCCCTGCCCCAGGGTGGGAGCCACACACACACCCCCCA-------------------------CCCCCCGCCCCAGGGTGGGAGCCAC-ACACACACCCCC---------------CGCCCCACACACACCCCCGAC-- s mm5.chr1 185034039 225 - 195203927 CAGACCTGTGCCCACACACACACTCC-CCCTACATCAGACCTGTGCCCACACACACTCTCC----------------------------CTACATCAGACCTGTGCCCTCACACACTCCCCCTACATCAGACCTGTGCCCACACACACTCCCCCTACATCAGACCTGTGCCCTCACACACTCCCCCTACATCAGACCTGTGCCCAC-ACACACTCCCCCTACATCAGACCTGTGCCCCCCACACACTCCCCCTAC-- s danRer1.chrNA 199262192 197 - 390413307 GCGACCGCTACCCATGCACGTCCCCGACCACCCAGCAGA------CACACCCAGCCCAgccgccgggcgcccccccgcggtccgcaccgccgcccccAAGCCG--CCCGGACGCCCCCACCCACCACCCG---------CTCCAACATCCTTCCCA---------------------AGCCCCTCCCACAT-------GCGCACACAACGTACACTCCC---------------CCAGCCGTGCAACCACCCGGCGC a score=38.0 s hg17.chr17_random 969569 3 + 2618010 TGT s danRer1.chrNA 199262389 3 - 390413307 CGC a score=-1518.0 s hg17.chr17_random 969572 27 + 2618010 GCTGCTGACTGTGAGGATGGACTTCCG s fr1.chrUn 16312090 18 - 349519338 GCTGCTGAC---------AGGTTTCAG s danRer1.chrNA 199262392 17 - 390413307 GTCTCCGCG---------CGACCACG- a score=7416.0 s hg17.chr17_random 969599 81 + 2618010 GCACCTCCTGCCTCCTGCCTTTGCAGGACCGCCTGGCCCAGCCCCAGCTGCCATGGCTGTCCAGCCGGAGGGTGCTGCTCA s panTro1.chr19_random 597480 81 - 57627672 GCACCTCCTGCCTCCTGCCTTTGCAGGACCGCCTGGCCCAGCCCCAGCTGCCATGGCTGCCCAGCCGGAGGGTGCTGCTCA s fr1.chrUn 16312108 74 - 349519338 GCAGCTCCTCCGTTCCTCCGGAGCACGGCCA-------CAAGCACAGCTGCGAGCGCTGCTGTTCCTCACCGTTACCGTCA s danRer1.chrNA 199262409 72 - 390413307 --ACACCAGCCAGCCCGGATGAACGAGCCCG-------CCGACCGCGCGCTCATGACCCTCTAGCCTGCGCGCGCCGCCCA a score=212.0 s hg17.chr17_random 969680 4 + 2618010 GTGA s panTro1.chr19_random 597561 4 - 57627672 GTGA s fr1.chrUn 16312182 4 - 349519338 ACGT a score=91.0 s hg17.chr17_random 969683 1 + 2618010 A s rn3.chrUn 69915987 1 - 75822765 A a score=11150.0 s hg17.chr17_random 969684 26 + 2618010 GGGGACCCTCGGGTGGACTGGGGTCA s panTro1.chr19_random 597565 26 - 57627672 GGGGACCCTCGGGTGGACTGGGGTCA s mm5.chr11 121383786 26 + 121648857 GGGGACCCTCAGGTAGACTGTGGTCA s rn3.chrUn 69915988 26 - 75822765 GGGGGCCTTCAGGCAGACTGTGGTCA s fr1.chrUn 16312186 18 - 349519338 CGGCACCT--------GTTTGTGTCA a score=0.0 s hg17.chr17_random 969710 4 + 2618010 CCAC a score=1746.0 s hg17.chr17_random 969710 3 + 2618010 CCA s panTro1.chr19_random 597591 3 - 57627672 CCA s mm5.chr11 121383812 3 + 121648857 CCA s rn3.chrUn 69916014 3 - 75822765 CCA a score=100.0 s hg17.chr17_random 969713 1 + 2618010 C s panTro1.chr19_random 597594 1 - 57627672 C a score=16742.0 s hg17.chr17_random 969714 172 + 2618010 GCTTCTGTCGTTGACCAGCTCTCTCTCAGCCGAGGCCACCTCCACTCACATGAGGCGCCCTGGGCTGGGACCTCTGGCCCTGTGGTACGGGGCAGGTGCTGGC----GTGCAGTCTCACCTGTGGAGGATAAAAGTGCTGCCTGAAATTTGAGATCCCCCAGTGCTCCCTCCTTGT s panTro1.chr19_random 597595 176 - 57627672 GCTTCTGTCGTTGACCAGCTCTCTCTCAGCCGAGGCCACCTCCACTCACATGAGGCACCCTGGGCTGGGACCTCTGGCCCTGTGCTACTGGGCAGGTGCTGGCTGGCGTGCAGTCTCACCTGTGGAGGATAAAAGTGCTGCCTGAAATTTGAGATCCCCCAGTGCTCCCTCCTTGT s fr1.chrUn 16312204 135 - 349519338 GCTGCAGCCGCAGAT-----------------GTGTCAGCTCCACCGGCCTCTG-----CTGGGACAGGTCCTCTGGCTGCTTGGAACATGACAAGTCCTGTC------GTAGCAACATTTTAGCTGCATTAA-----TATCTAAAA--GGAGGCCCCCCA------CCTCTTTGT a score=17780.0 s hg17.chr17_random 969886 186 + 2618010 TGCTTCCGGACGTGAGTGGTGGTCTGTGCTGCTGGCCTCTGTCCAGCACGTGCCTGCATCAGGCCCAGCATGGTCTGCAGACCCCCAGCCGGCGAGTGGGATGGGGGTCCACATAGGTGAACTAAGTGTCAAGGGTGGGCCACACCCCGGGGCCCCCATAGGAGAGCGCACCGGGCGGCTTCCAGC s panTro1.chr19_random 597771 186 - 57627672 TGCTTCCAGACGTGAGTGGTGGTCTGTGCTGCTGGCCTCTGTCCAGCACGTGCCTGCATCAGGCCCAGCATGGTCTGCAGACCCCCAGCCGGCGAGTGGGATGGGGGTCCACATAGGTGAACTAAGTGTCAAGGGTGGGCCACACCCCGGGGCCCCCATAGGAGAGCGCACCGGGCAGCTTCCAGC a score=19356.0 s hg17.chr17_random 970072 235 + 2618010 TTGGGGGTCAGGAGGCCCCCGTGGTGGGGGCTGCAGTGTGAGTCTGTACACAT-CAGCAGGAAGGGGATTTGGCCAGAAGCTCCCATTCTGGAGGGTTGCTGGGATGGCAGAGGTGCCCCCCCAGTGCCAGGCTGGACCGGCCTCAAGGTGCTCAGCAGTGCCAGGCTGGACCGGCCTCGAGGCG-----CCCCCAGTGCCAGGCTGGACCGG-------------------------------------------------------------------GCCTCGAGGCGCTCAGCAGGCTGT---------GCAG s panTro1.chr19_random 597957 302 - 57627672 TTGGGGGTCAGGAGGCCCCCGTGGTGGGGGCTGCAGTGTGAGTCTGTACAAAT-CAGCAGGAAGGGGATTTGGCCAGAAGCTCCCATTCTGGAGGGTTGCTGGGATGGCAGAGGTGCCCCCCCAGTGCCAGGCTGGACCGGCCTCAAGGTGCTCAGCAGTGCCAGGCTGGACCGGCCTCGAGGCG-----CCCCCAGTGCCAGGCTGGACCGGCCTCGAGGCGCCCCCAGTGTCAGGCTGGACCGGGCCTCGAGGCGCCCCCAGTGCCAGGCTGGACCAGGCCTCGAGGCGCTCAGCAGGCTGT---------GCAG s mm5.chr11 121384046 226 + 121648857 TTGAGGTTCAGGTGACATCAGTGGTGGGGACTGTGGTG---ACCCAAGCAAATATCACAGGAAGGAAAGGGG----------------CTGCAGGGCAACCAGAGTTG-AGGGTCGACATCCAAGGGACCAGC-AAACCAGGTTCCAGGAGTCTTTCTCT-CCAGGTGGAGCTGGCATGGGGGTGGGAGTGTTTCATTTTCTGA-TGGGCGGG-----------------------------------------------------------------CGGTGCCGATGC---CAACAGGTTGTACTTGTCTGGCGG a score=138836.0 s hg17.chr17_random 970307 731 + 2618010 TTTCT-TTTTCCTGATACCTTAATGGAAGCAAA------TGCAGGAGGAGGTGGGTGGGCCGGTGAGTCAGGCACTGAGCCC-GGCTGGGAGGCGCCCTCACCCCTGCCTGGCGG------AAAGTGCTGGCCTTGTCTCTGGGTCCCTCCTACCTCCACCCTGCGGGGTCCACAAAGACCTGCGCTTGCCCAGTGCACCGTAGACTCCAGGGTCTCCGTTGACCACATGTGCAGGCCCTGAGGGTCCA---TGTAAGTTCCT---GACCCCAGAAGGCCTCTGAGCAGCTGTC---CCCGCCTTGGCCAAGGTGCCAGATATGTGTGCTGCCCTG--TCCCCTGGGACCCCCAGTCACCAGCAGCTGGCTCGGGCCTGTACTCATCAGGCAGGTGACAGCTCAGCTCACTTCAGCCCAGCAAGGGCAGCCGGCC---AGGGGTGCAGACGGCGTTAGCTTCTTCCAGGGCCGGCGAACCCCAAGTCAAGGTCGTCCCAGCTCTTGGCCAGGGACGTTTCAGAGCCTTCAGAACGTGAAATGGCACCGGCGAAACCAGTGCCATTGAGATTTCACTTCTCAAAGTTTCTATTGCGTTAGGAGACTTGGGGCCAAAACCTAGAGGCTCAGAACAGGTGAGGC-----CTTGAAACCTGCAATAAGAGCAAATAATAAAA--CCATGTTTCCCAAGTCCGTCCCGGGTGTAGGAATGCGGGGCGTGCAGAGGTTTCTGTTTCACAGTGGCCCGCCCGTCTAAGAAACT s panTro1.chr19_random 598259 736 - 57627672 TTTCT-TTTTCCTGATACCTTAATGGAAGCAAA------TGCAGGAGGAGGTGGGTGGGCCGGTGAGTCAGGCACTGAGCCC-GGCTGGGAGATGCCCTCACCCCTGCCTGGCGG------AAAGTGCTGGCCTTGTCTCTGGGTCCCTCCTACCTCCACCCTGCGGGGTCCACAGAGACCTGCGCTTGCCCAGTGCACCGTAGACTCCAGGGTCTCCGTTGACCACATGTGCAGGCCCTGAGGGTCCA---TGTAGGTTCCT---GACCCCAGAAGGCCTCTGAGCAGCTGTC---CCCGCCTTGGCCAAGGTGCCAGATATGTGTGCTGCCCTG--TCCCCCGGGGCCCCCAGTCACCAGCAGCTGGCTCGGGCCTGCACTCATCAGGCAGGCGACAGCTCAGCTCACTTCAGCCCAGCAAGGGCAGCCGGCC---AGGGGTGCAGACGGCGTTAGCTTCTTCCAGGGCCAGCGAACCCCAAGTCAAGGTCGTCCCAGCTCTTGACCAGGGACGTTTCAGAGCCTTCAGAACGTGAAATGGCACCGGCGAAACTAGTGCCATTGAGATTTCACGTCTCAAAGTTTCTATTGCGTTAGGAGACTTGGGGCCAAAACCTAGAGGCTCAGAACAGGTGAGGCGAGGCCTTGAAACCTGCAATAAGAGCAAATAATAAAA--CCATGTTTCCCAAGTCCGTTCCGAGTGTAGGAACGCGGGGCGTGCAGAGGTTTCTGTTTCACAGTGGCCCACCCGTCTAAGAAACT s mm5.chr11 121384272 627 + 121648857 CTTCTCCTTTTCTGATAACTAAATAGAAGCAGAAGTGCTTGCAGGTG--GGTGGGTGGGTGGGTGAGTCAGCAA--GTGCTC-AGGCTGGAGGCACCCCACCCCCTTTCTGGGGTGGGTCCAAAGGATTGGGC------CCCAGACACACCCAGCTCAA-------GGGTCCA-AGAGAGCTGTGCTTGATTAGGATGCTGTAAACCCCAAGAC-----TTTGTCTCAGGTTTACTCCTTCAGGACCCG---ATAAGGCTTCTCTCAACTTCTGTTGGCCTGGAGACACTTGGCTCACTTGCCTT--CCA------CCCACATGAGTTCAGTCTTGGTTCCCTTGGGG--CCAAGTCACCAGCACTTGG-------------------------------------------------GGTCAGGGTATGTGGCCTCTAGGCATGTAGATAGCATTGACCTCTT-CAGGACCAAGATGCCCTAAGAAGAGGCCTTCC---------------------TCAAAGCCTTTGCA--GGAGAATAGCTACAGGGAAATTTGT----CTGTGATGTCGTACCACAGGGTTTCTGTT-TATTGGAGAACTTGGGCCCAAAGTA-GGAAACTGAGGACA----AAGT-----CTTGAGACATA-ATTCACAGTAGATAACAAGCTTCCATCTTCTTGAATCTACTCTAGTTTGTAGAGAAGC-TGCCGAGCCACAGTTTCTGTTTCACA------------CCAGGGGAAGT s rn3.chrUn 69916511 625 - 75822765 TCTCC-CTTTTCTGATAGCTAAATAGAAGCAAAAGCGCTTGCA------GGTGAGTGGGTGGGTGAGTCAGCAA--GTGCTTAGGCTGGGAGGCACCCCACCCCCTTTCCGAGGTAGGTGCAAAGGATAGGGC------CCCAGACACACCCAGCTCAA-------GGGTCCATAGAGAGCTGTGCTTGATTAGGACACTGTAAACCCCAAGAC-----TTTGTCTCAGGTTTACTCCTTCAGGACCTGAACTTCAGGCTTCTCTGAACTCCTGTTGGCCTGGAAACACTTGGCTTGCTTACCCT--CCA------CCCACATGAGTGCAGTCTTGGTTCCCCTGGGG--CTATGTCACCAGCACTTAG-------------------------------------------------GGTCAGGGTAGGTAGCCTCCAGGCATGCAGATAGCATTGACTTCTTCCAGGACCGAAGAGCCCTGAGAAGAGGGCTTCC---------------------CCAAAGCCTTTGCA--GGGGAATGGCTACAGGGAAATTTGT----CTGAAATGTCATACCCCAGGGTTTCTGTTTTATCGGAGAACTTGGGCCCAAAGCA-GGAAACTGAGGACA----AAGC-----CTTGAGACATA-ACTCACAGCAGATAACAAGCTTCCATCTTCTTGAAAAC--TCTGGTTTGAGGAGAAGC-TGCTGAGC--CAGTTTCTGTTTCACA------------CCAGGGGAAGT a score=12755.0 s hg17.chr17_random 971038 96 + 2618010 GGGGCGAAGGGCAGGGCGAGGGCTGGGCCGAGGGGAGAAGGTTGTTGGGAAAGCCT-GGTTTGGCCGGTACGGGAGCTCATTCTGAGAAGCCTCCGT s panTro1.chr19_random 598995 96 - 57627672 GGGGCGAAGGGCAGGGCGAGGGCTGGGCCGCGGGGAGAAGGTTGTTGGGAAAGCCT-GGTTTGGCCGGTACGGGAGCTCATTCTGAGAAGCCTCCGT s mm5.chr11 121384899 73 + 121648857 GGGGCAAAGGGCAGGAGGCAGCTATTACTGAAGGAATGAGTTATATAAGTAG--------TTGACCAGT--GAGAGTATAT--------------GT s rn3.chrUn 69917136 88 - 75822765 GGGGCTAAGGGCAGGAGGTGGCTGTTACTGGAGAAATGAGTTATGCAAGTGG--------TTGACCAGTGAGGGAGCTCATTCTAAG-AGTATATGT s galGal2.chr18 5992369 91 - 8919268 GGGATGTAAGCCAGGACCTGATGTGGGCAGAGGGAGGCTGGGGAATGGGAAAGGATGGGTTTGGT------GGGTGCCTCGGATGAAATGGCTCCGT a score=38755.0 s hg17.chr17_random 971134 158 + 2618010 GCTTTCTGCATTCTCTGGGGGAGGCCAGGCCCCGCAGGGTTCAGG--GGCTTCAGAGGGGGTTCTGTGAGCAGGGCTTGGCTTGAAAGCCATTTGGGGCATGCACCTCATCCCGCGGCCAGGTGGCATCCGGGGAAGGGGCCGGGCCGATGGCCCTGACT s panTro1.chr19_random 599091 158 - 57627672 GCTTTCTGCATTCTCTGGGGGAGGCCAGGCCCCACAGGGTTCAGG--GGCTTCAGAGGGGGTTCTGTGAGCAGGGCTTGGCTTGAAAGCCATTTGGGGCATGCACCTCATCCCGCGGCCAGCTGGCGTCCGGGGAAGGTGCCGGGCCGATGGCCCTGACT s mm5.chr11 121384972 155 + 121648857 AC-CTCTGGGTTCTCTGTAGGATGCTAGGCCCCA---GGTTCTGGGTGTCTCAAGCCTAAGTCCTGTGAATAAGA-TCAATTTGATGGGCTCTTACAGTATATAACTTGTCCCAAGGCTTAATGAGGCCCAGAGTAGGGGCTCAACTGATGGCCCCAGCC s rn3.chrUn 69917224 156 - 75822765 AC-CTCTGGGCCCTCTGTAGGATGTCAGGCTGCA---GGTTTTGGGTGTCTCGAGCCTGAGTCCTATGAATAAAACTCAGTTTGATGGGCTCTTATAGTATATAACTTGTCCCAAGGCTCAATGAGGCCTAGAGGAGGGGATAAACTGATGGCCCCAGCT a score=0.0 s hg17.chr17_random 971292 21 + 2618010 GGAACTCACTGCCCTGCTGGG a score=-309.0 s hg17.chr17_random 971292 3 + 2618010 GGA-- s panTro1.chr19_random 599249 3 - 57627672 GGA-- s mm5.chr11 121385127 5 + 121648857 GAAGA a score=1231.0 s hg17.chr17_random 971295 6 + 2618010 ACTCAC s panTro1.chr19 82465459 6 + 82489036 ACTCAC s mm5.chr11 121385132 6 + 121648857 GCCCAC a score=652.0 s hg17.chr17_random 971301 12 + 2618010 TGCCCTGCTGGG s panTro1.chr19 82465465 11 + 82489036 TGCCC-GCTGGG a score=5176.0 s hg17.chr17_random 971313 83 + 2618010 TGAGGCCCCACGCCGGTGGCAGGTGGACGCGTCGCTGCCTGCTTAGGGATCCCCTTCCTGGAATCTTGGCCTCGCTGGCCCTT- s panTro1.chr19 82465476 83 + 82489036 TGATTCCCCCCGCCGGTGGCAGGTGGACGCGTCGCTGCCTGCTTAGGGATCCCTTTCCTGGAATCTTGGCCTCGCTGGCCCTT- s rn3.chrUn 69917380 61 - 75822765 CAAGAGCCTATACCCACAGCAGACAGA---------------TTGA--------TTTCTCCAATCATGTCCACTCTCCCACACT a score=1768.0 s hg17.chr17_random 971396 34 + 2618010 CCAGCCACATGGGGGGTCCCGCGGGATGGGATCC s panTro1.chr19 82465559 34 + 82489036 CCAGCCACATGGGGGGTCCCGCGGGATGGGATCC s mm5.chr11 121385237 26 + 121648857 CAGGGCAGATGGGG--------GGAGTGAGATTC s rn3.chrUn 69917441 8 - 75822765 CCAGTCAA-------------------------- a score=-7398.0 s hg17.chr17_random 971430 113 + 2618010 TCCTTTTGGGTGCCGCTGCCGTCGCGACCC--AGGGAAGTGGGCAGCAGAGCTGTGG-GGAGTGTCTGCCCTTCGA----GGAAGCTGGGAAATGAGGGTGGTCCCGGCGCCGTGGGCCG s panTro1.chr19 82465593 104 + 82489036 TCCTTTTGGGTGCCGCTGCCGTCGCGACCC--AGGGAAGTGGGCAGCAGAGCTGTGG-GGAGTGTCTGCCCTTTGA----GGGAGCTGGGAAATGAGGGTGGTCCCGGCGC--------- s mm5.chr11 121385263 66 + 121648857 TCCTTTGGG-----------GCTGTGATCT---GGGGAGTAGACATCAG-GCTGCAGTAGGGGGTCTGCTTT-----------------GCATTGAGA---------------------- s rn3.chrUn 69917449 44 - 75822765 -------------CACTGCCTTTGCA-------GATGCGTA---------GCCTTGG-TTCTTGTAAGCCC------------------------AGG---------------------- s fr1.chrUn 214254014 119 + 349519338 TCTTTTGTGATGGCCATGTGGGCGGAGCCTGAGGGGACGTGGGCAGCAGGTTTGTGG-CGGGCGTCATATCTCAGACTCCACAGGTGGATACAGGAAGAAGCTGCTGAAGCTGAGAGCAG a score=9699.0 s hg17.chr17_random 971543 195 + 2618010 TGGAGGTGGGTTGGGGGCGACTCTGGGAGGTGGGGGTGCTCCTGGCGCCGTGGGCTGTGGAGGTGGG-------------TTGGGGGCGACTCTGGGAGGTGGGGGTGCTCCCGGCGCCGTGGGCTGTGGAGGTGG-----GTTGGGGGTGAC-------------TCTTGTCTGGTGGGTTCGGTTCAGCCC-CAGTGGGCTTTGCATTTGCAACAGGCACGTGAG s panTro1.chr19 82465697 147 + 82489036 ------------------------------------------------CGTGGGCTGTGGAGGTGGG-------------TTGGGGGCGACTCTGGGAGGTGGGGGTGCTCCCGGCACCGTGGGCTGTGGAGGTGG-----GTTGGGGGTGAC-------------TCTTGTCTGGTGGGTTCGGTTCAGCCC-CAGTGGGCTTTGCATTTGCAACAGACACGTGAG s mm5.chr11 121385329 120 + 121648857 ------------------------------------TACCCCCACCATTGTAGGCTGTGAGTGTGGA---------------------AGCTGCAGGAG--------------GGTACCTTG---------GTTGG-----GTAG---------------------TATCCGCTTGTGGTTTCTGTTCATCTTGGGGTTAGTTTTGTG-TTGTCACGGGCTTGTAAG s rn3.chrUn 69917493 205 - 75822765 -CCAGATGGACTGAGTGAGATT--------------CTCCTTTGGGACTGTGAGCTG-GGGAGTAGACATCAGGCTGCAGTAGGGTCCTACTTTGCA---TTAAGATACCCACACCATTTTAGGTTGTG--GTTGGAAGCTGTAGGAGGGTACTTTGGCTGGGTAGTATCCACATGTGGTTTCAGCTCATCTTGGGGTTGGTTTTGCA-TTGTGACAGGCTTGTAAG a score=7370.0 s hg17.chr17_random 971738 88 + 2618010 CGATTTCTCAGTGAGTCCGGCT---------CAGCCGCACTGAGGAGATAAGTGGGGAAAGAGCACAAAGACCCCTCCCCACGAAGGCCCTGGGACA s panTro1.chr19 82465844 88 + 82489036 CGATTTCTCAGTGAGTCCGGCT---------CAGCCGCACTGAGGAGATAAGTGGGGAAAGAGCACAAAGACCCCTCCCCACGAAGGCCCTGGGACA s rn3.chrUn 69917724 78 - 75822765 TGTTTTTTAAATGGGTAGAATTGTTTATTTGGAACTATACTAACAAAATAAGTGGG--AGTGGCATGTGCTCCTTTTCCT----------------- a score=3596.0 s hg17.chr17_random 971826 46 + 2618010 TGGCCGGACTGAGGGTCTTGCTCT-----CGGACATGTGCCCATCATGGCC s panTro1.chr19 82465932 46 + 82489036 TGGCCGGACTGAGGGTCTTGCTCT-----CGGACATGTGCCCATCATGGCC s mm5.chr11 121385496 50 + 121648857 TGAACGGTGTGGCGCTCCTACTCTTTGTCTGGATGCATG-CTATTGCAGCT s rn3.chrUn 69917802 25 - 75822765 TGTCTGGACTAGTG--------------------------TTATTGCAGCT a score=892.0 s hg17.chr17_random 971872 54 + 2618010 GAGGTGCAGGTGCCTTTGGTCCAGGTGG----GGCCGAGGGGTCCCCTGG-----GTGAGACC s panTro1.chr19 82465978 54 + 82489036 GAGGTGCAGGCGCCTTTGGTCCAGGTGG----GGCCGAGGGGTCCCCTGG-----GTGAGACC s mm5.chr11 121385546 44 + 121648857 ACAGTATGAGCTACAC-----------G----GGCCAAATGACCCCTTGGA----ATTAGTGG s rn3.chrUn 69917827 44 - 75822765 ACAGCATGAGCTAGGA-----------G----GGCCAAGTGATCCCTTGGA----ATTAATGG s galGal2.chr14 18683224 63 - 20603938 GAGCTGGAGCTGCTGCTGCCCGAGGCGGAGGCGGCCCCGCGGCCCCGTGTGAGGTGTTTCAGC a score=1786.0 s hg17.chr17_random 971926 5 + 2618010 CCGTC s panTro1.chr19 82466032 5 + 82489036 CCGGC s mm5.chr11 121385590 5 + 121648857 CTGGC s rn3.chrUn 69917871 5 - 75822765 CTGAC s galGal2.chr14 18683287 5 - 20603938 TGGCC s danRer1.chrUn 185882289 5 - 367113659 CTGTT a score=-9626.0 s hg17.chr17_random 971931 62 + 2618010 GTGGTCGAGGTTGT--------GTTTTCTGTCTCCCGTGCTGCCGGCCCCTCCAGCACGTGCCGCCAACT s panTro1.chr19 82466037 62 + 82489036 GTGGTCGAGGTTGT--------GTTTTCTGTCTCCCGTGCTGCCGGCCCCTCCAGCACGTGCCGCCAACT s mm5.chr11 121385595 48 + 121648857 TTGTCAGAAGTAG---------GTCTTTGGCCTCCTTCTTTGCTGATCACT--AGCATG----------- s rn3.chrUn 69917876 48 - 75822765 TTGACAGAAGATG---------ATCTTCAGCCTCCTCCTTTGCTGATCACTCC--CATG----------- s galGal2.chr14 18683292 56 - 20603938 ACCCCATGAGCAG---------GT-----GGCCCTGTTCCTGCAGGCCACCCCGCAGCGCGACATCAGCC s fr1.chrUn 22053001 64 + 349519338 GGGATGGAACTCGTATCCTAAAGCTTCCCTGGTCCTCCTTTGCCGAC------AGTAAAACTCAGCAGCT s danRer1.chrUn 185882294 58 - 367113659 ACTGCCAGAGCTGC--------CACCGCCACCTCCAGTGCTGCCAGACCCTCCAGTGCTGCCAGAC---- a score=-56.0 s hg17.chr17_random 971993 14 + 2618010 CACATTTGAAGTGG s panTro1.chr19 82466099 14 + 82489036 CACATTTGAAGTGG s mm5.chr11 121385643 10 + 121648857 ----GTAGAGTTGG s rn3.chrUn 69917924 10 - 75822765 ----GTAGAGTTGG s fr1.chrUn 22053067 12 + 349519338 CTTATTC--AGTGG s danRer1.chrUn 185882352 13 - 367113659 -CCTCCAGAGCTGC a score=-324.0 s hg17.chr17_random 972007 2 + 2618010 CG s panTro1.chr19 82466113 2 + 82489036 CG s mm5.chr11 121385653 2 + 121648857 AG s rn3.chrUn 69917934 2 - 75822765 AG s galGal2.chr18 5994093 2 - 8919268 CT s danRer1.chrUn 185882365 2 - 367113659 CA a score=69.0 s hg17.chr17_random 972007 2 + 2618010 CG s danRer1.chrUn 185882365 2 - 367113659 CA a score=-58446.0 s hg17.chr17_random 972009 107 + 2618010 TTGGTC--ACAAAGGT----------GCCTTGACGTGGACACCCTCCCTGACTTGGCTTTG------------------CTGAG-TGTGAG-ATCCTTT------------GACGG--------TGGTGGGCG----GCGTTCCAG---AGCCTGTCCCGTCCAGG---- s panTro1.chr19 82466115 109 + 82489036 TTGGTC--ACAAAGGT----------GCCTTGACGTGGACACCCTCCCTGACTTGGCTTTG------------------CTGAG-TGTGAGGATCCTTT-----------TGACGG--------TGGTGGGCG----GCGTTCCAG---AGCCTGTCCCGTCCAGG---- s mm5.chr11 121385655 132 + 121648857 TTGGC------AAGAG----------GTCTCACCATG---ATTTTATCTCATTTAACCATGAACCCTCACACG-GAGGCCAGGG-AGGCAG-GCCTTTTGTATTCTGCAGTGTCAG--------GATTGGGGA----GGGTCTGAAACTAAGCGGTGTTGTCTGGG---- s rn3.chrUn 69917936 130 - 75822765 TTGGCC---CGGAGGTCTCACTTATGACTTTATCTCAAACACGAACCCTCATGTG----TA---------------GGCCAGGG-AGGCAG-GCCTTTTGTATTCTGCAGTGTTAG--------GGTTGGGAA----GGGTCTGTGACAAAGCAGTATTGTCTGGG---- s galGal2.chr18 5994095 82 - 8919268 TTGGAC--CCAAAGAT----------CCCTTTCT-----CCCCCCCCCCAAGCAGATTTTG-----------------------------G-TTCATTTAAAACCAGCTGTTT------------------------------------ATTTCCTACCCTCTGG----- s fr1.chrUn 22053079 108 + 349519338 TTGGT--------GGT----------CCCTCAGC------ATTCACAGCGATCTGGTCCTG--------CACATGTGATCTGAG-ATGCTG-GAAGTCT-----------TCACAG--------TAGTGAAGATATTAGTTTGGAGGTGACTTTTTGCAGT--------- s danRer1.chrUn 185882367 123 - 367113659 --GACCCTCCAGAGCT----------GCCAGACC------CTCCAGAGCTGCCAGACCCTC------------------CAGAGCTGCCAG-ACCCTCCAGAGC------TGCCAGACCCTCCAGAGCTGCCA----GACCCTCCAGAGCTGCCAGACCCTCCAGAGCCG a score=2237.0 s hg17.chr17_random 972116 4 + 2618010 CTGC s panTro1.chr19 82466224 4 + 82489036 CTGC s mm5.chr11 121385787 4 + 121648857 ATAT s rn3.chrUn 69918066 4 - 75822765 CTGT s canFam1.chrUn 6322526 4 + 91062872 CTGC s galGal2.chr18 5994177 4 - 8919268 TCCT s fr1.chrUn 22053187 4 + 349519338 TTAT s danRer1.chrUn 185882490 4 - 367113659 CTGC a score=-4676.0 s hg17.chr17_random 972120 12 + 2618010 TTCCTGAC--------TCTG s panTro1.chr19 82466228 12 + 82489036 TTCCTGAC--------TCTG s mm5.chr11 121385791 20 + 121648857 ATTTTTACCCTGTTATCCTG s rn3.chrUn 69918070 19 - 75822765 ATTATTACCCTGGTT-TTTT s canFam1.chrUn 6322530 12 + 91062872 TCACACCC--------CCTC s galGal2.chr18 5994181 12 - 8919268 GTGCTAAC--------TCTG s danRer1.chrUn 185882494 12 - 367113659 CACCTGAA--------CCTC a score=101588.0 s hg17.chr17_random 972132 80 + 2618010 ---------CCTTTCTTCTC------CAGCGCCGTG-CCGTCCCTGCAGTGACACCGAGGTGCTC--CTAGCCGTCTGCACCAGCGACTTCGGTGAGT s panTro1.chr19 82466240 80 + 82489036 ---------CCTTTCTTCTC------CAGCGCCGTG-CCGTCCCTGCAGTGACACCGAGGTGCTC--CTAGCCGTCTGCACCAGCGACTTTGGTGAGT s mm5.chr11 121385811 80 + 121648857 ---------TCTTTCCTCCT------CAGCCCCCTG-TCGGCCTTGCAGTGACACTGAGGTCCTC--CTTGCCATCTGTACCAGTGACTTTGGTAAGT s rn3.chrUn 69918089 80 - 75822765 ---------TTTTTCCTCCC------CAGCCCCCTG-TCGACCTTGCAGCGACACTGAGGTCCTC--CTTGCCATCTGCACCAGTGACTTTGGTAAGT s canFam1.chrUn 6322542 86 + 91062872 ---------CCCCTCCTCTCTCCCGGCAGCCCCCTG-CCGCCCTTGCAGTGACGCGGAGGTGCTG--CTGGCCGTCTGCACCAGCGACTTCGGTGAGT s galGal2.chr18 5994194 80 - 8919268 ---------CCCTTTCTCTC------CAGCTCCATG-CCGACCATGCAGTGACACAGAGGTCCTC--TTGGCCGTCTGCACTAGTGATTTCGGTGAGT s fr1.chrUn 125517926 80 - 349519338 ---------CCCCCCCCCCC------CAGCTTCGTG-CCGACCCTGCAACGACACAGAGCTCCTC--CTGGCTGTGTGCAACAGTGACTTTGGTGGGT s danRer1.chrUn 185882506 87 - 367113659 CTGAATGGCCGCCGCCTCCT------GAGCTCCCTGAATGGCC--GCCGCCGC-CTGAGCTTCCTGAATGGCCGCCGCCGCC--TGAGCTTCCTGAAT a score=-649.0 s hg17.chr17_random 972212 7 + 2618010 GTCTGCT s canFam1.chrUn 6322628 7 + 91062872 CCTCACG s galGal2.chr18 5994274 7 - 8919268 TGTTGTT s fr1.chrUn 125518006 5 - 349519338 --CCATC s danRer1.chrUn 185882593 7 - 367113659 GGCCGCC a score=-523.0 s hg17.chr17_random 972212 7 + 2618010 GTCTGCT s panTro1.chr19 82466320 7 + 82489036 GTCTGCT s canFam1.chrUn 6322628 7 + 91062872 CCTCACG s galGal2.chr18 5994274 4 - 8919268 ---TGTT s fr1.chrUn 125518006 7 - 349519338 CCATCCT s danRer1.chrUn 185882593 7 - 367113659 GGCCGCC a score=0.0 s hg17.chr17_random 972219 2 + 2618010 CG a score=-241.0 s hg17.chr17_random 972219 2 + 2618010 CG s canFam1.chrUn 6322635 2 + 91062872 TG s fr1.chrUn 125518013 1 - 349519338 -C a score=-127.0 s hg17.chr17_random 972219 2 + 2618010 CG s panTro1.chr19 82466327 2 + 82489036 CG s canFam1.chrUn 6322635 2 + 91062872 TG s fr1.chrUn 125518013 1 - 349519338 -C a score=1200.0 s hg17.chr17_random 972221 2 + 2618010 GC s canFam1.chrUn 6322637 2 + 91062872 GC s fr1.chrUn 125518014 2 - 349519338 GC s danRer1.chrUn 185882600 2 - 367113659 GC a score=2000.0 s hg17.chr17_random 972221 2 + 2618010 GC s panTro1.chr19 82466329 2 + 82489036 GC s canFam1.chrUn 6322637 2 + 91062872 GC s fr1.chrUn 125518014 2 - 349519338 GC s danRer1.chrUn 185882600 2 - 367113659 GC a score=167.0 s hg17.chr17_random 972223 8 + 2618010 AGCTTCTA-- s panTro1.chr19 82466331 8 + 82489036 AGCTTCTA-- s fr1.chrUn 125518017 8 - 349519338 AACCTCCA-- s danRer1.chrUn 185882602 8 - 367113659 --CGCCTGAG a score=-563.0 s hg17.chr17_random 972223 8 + 2618010 AGCTTCTA-- s fr1.chrUn 125518017 8 - 349519338 AACCTCCA-- s danRer1.chrUn 185882602 8 - 367113659 --CGCCTGAG a score=-384.0 s hg17.chr17_random 972231 3 + 2618010 CCT- s panTro1.chr19 82466339 3 + 82489036 CCT- s fr1.chrUn 277337133 3 + 349519338 GCT- s danRer1.chrUn 185882610 3 - 367113659 -CTT a score=-472.0 s hg17.chr17_random 972231 3 + 2618010 CCT- s fr1.chrUn 277337133 3 + 349519338 GCT- s danRer1.chrUn 185882610 3 - 367113659 -CTT a score=100.0 s hg17.chr17_random 972234 1 + 2618010 C s danRer1.chrUn 185882613 1 - 367113659 C a score=100.0 s hg17.chr17_random 972234 1 + 2618010 C s panTro1.chr19 82466342 1 + 82489036 C a score=0.0 s hg17.chr17_random 972234 1 + 2618010 C a score=0.0 s hg17.chr17_random 972234 1 + 2618010 C a score=-15197.0 s hg17.chr17_random 972235 102 + 2618010 CTGTGCGCCTGGTTTCTGCCACATG--------GAGCTGTTT----------GGGCCCAGGAGTCCCTCTTCAGGGCCCAGGACAGCCTTCCGGTGC---------------------------TGCGTGGAC-------------CCTCCTGGAGGGGC s panTro1.chr19 82466343 94 + 82489036 CTG--------GTTTCTGCCACATG--------GAGCTGTTT----------GGGCCCAGGAGTCCCTCTTCAGGGCCCAGGACAGCCTTCCGGTGC---------------------------TGCGTGGAC-------------CCTCCTGGAGGGGC s rn3.chrUn 69918169 114 - 75822765 CTGTTCCTGTGGTTGTCTTTCCA-G--------GATCT----------------------GAGTGCTTTCTTAAG--TCAGCATTGATTTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT-------------GTGTGTATGGGAGG s fr1.chrUn 277337136 111 + 349519338 TTGGGATCCACGTTTACGCC-------------GACTCGTCTACGCAT--GCAGACGCAGGCGTCCATCTTTGTG----TTGACTGACAGTTTGTGTGTCTGCAGCC-----------------GGCGTTGGC-------------AGTTTTGAAGGCGC s danRer1.chrUn 185882614 130 - 367113659 -------CTGAATGGCCGCCTCCTGAGCTTACTGAATGGCCGCCTCCTGAGCTTACTGAATGGCCGCCTCCTGAGCTTCCTGAATGGCCGCCTGAGCTTCC-----------------------TGAATGGCCGCCGCCGCCTGAGCTTCCTGAAGGGCT a score=-90.0 s hg17.chr17_random 972337 63 + 2618010 ACACGCTGTGGAAGC-------------------CCTGGGCT---CGGCCCTCCACCA-----------GCCCTGGGGAC-----AGGGACGCCACCGCCC s panTro1.chr19 82466437 63 + 82489036 ACACGCTGTGGAAGC-------------------CCTGGGCT---CGGCCCTCCACCA-----------GCCCTGGGGAT-----GGGGACGCCACCGCCC s rn3.chrUn 69918283 87 - 75822765 GTGGGTTGCTGAAGTTT-----------GCTGAACCTGGCTT---CACCCTGCAATTACAGGGAGCAGTGCACTGTGTACACTAAGGTGAGTCTGCATACC s danRer1.chrUn 185882744 82 - 367113659 ----GCCGCCTGAGCTTCCTGAATGGCCGCCG--CCTGAGCTTCCTGAATGGCCGCCG-------------CCTGAGCTTCCTGAATGGCCGCCGCCGCCT a score=1554.0 s hg17.chr17_random 972400 5 + 2618010 ACACT s panTro1.chr19 82466500 5 + 82489036 ACACT s mm5.chr11 121386055 5 + 121648857 GCATT s rn3.chrUn 69918372 5 - 75822765 GCATG s danRer1.chrUn 185882826 5 - 367113659 GAACT a score=31084.0 s hg17.chr17_random 972405 164 + 2618010 TGGAGGGAGCTGGGGGTTG---TTTTGGTGACTGTCAAACATTTTCCCATTTT-GTAAATGAGATCACTGCTCTTCGAGGGGACTCTTGAAGTCCACTGTCTCCCAGCAGCTCTTCTTGCTGAAGTGCTTTGTAAACAGCATTTTATCAGCAGCCCAGAGCATCCTTG s panTro1.chr19 82466505 165 + 82489036 TGGAGGGAGCTGGGGGTTG---TTTTAGTGACTGTCAAACATTTTCCCATTTTTGTAAATGAGATCACTGCTCTTCGAGGGGACTCTTGAAGTCCACTGTTTCCCAGCAGCTCTTCTTGCCGAAGTGCTTTGTAAACAGCATTTTATCAGCAGCCCAGAGCATCCTTG s mm5.chr11 121386060 156 + 121648857 CAGGCAGAGGTGGTGTTTGCATTCTAGGTG--TGTC-AGTGTGTTCTCACTAT-GCATAGCAGCTCACAA--CCTCCTGGGGACTCTGGAAGTCCTTCAGTTCCCAGTACATTTT----CAGAAATGCTTTGGGAACATAGTTCAGAGGGCAACCTGGTGTGTCCC-- s rn3.chrUn 69918377 157 - 75822765 CAGGCAGAGTTGGGGTTTGCA-TACTAGTG--TGTC-AGTGTATGTTCACTGT-GTACAGCAGCTCACAG--TCTCCTGCAGACTCTGGAAGTCCTTCAGTTCTCAGTTAAATTT----CAGAAGTGCTCTGGGAACATAGTGCAGTGGGCAGCATGGCATGTCCCTG a score=12559.0 s hg17.chr17_random 972569 142 + 2618010 GCGTTGGACACTCCTTGCCCCCCACCAGAGTTCACGCTGTTCCAGGCCTGAGGCCCCCGGCGGCTCTGCGGCTCTGCAGGAGGAGCTTTGGGG------------TCCCAGGGCTCCAGCCCCTTTGCTTGTGGCGTTTGCACAGACGCCCTGT s panTro1.chr19 82466670 142 + 82489036 GCGTTGGACACTCCCTGCTCCCCACCAGAGTTCACGCTGTTCCAGGCCTGAGGCCCCCGGCGGCTCTGCGGCTCTGCAGGAGGAGCTTTGGGG------------TCCCAGGGCTCCAGCCCCTTTGCTTGTGGCGTTTGCACAGACGCCCTGT s mm5.chr11 121386216 131 + 121648857 ---TTTGTCAGTCCCAGC------CCAGAGCTTGGCTCATTCTTCATCTA--------GGTGG--TTGGGGTTTTGAA--AGCCCCTTTGGAGTCAGGGATGTTTTCTGAGGGTTGGAGGCTCCTAGCCAG-AATATTTGCACAG-TGTTCTTA a score=19907.0 s hg17.chr17_random 972711 118 + 2618010 GGGAAAGGTTTGGCCTCCCGTCGTGTGGTGCC---GTGGAAGCCATGTC---CTGCAGGCC--CCGGCTCTGCAC-----CCCACCTCCAAGCTCAAGGACAGGCCC---------------CTTCTCACTGCT----TTCCCGGCCCCT s panTro1.chr19 82466812 118 + 82489036 GGGAAAGGTTTGGCCTCCCGTCGTGTGGTGCC---GTGGAAGCCATGTC---CTGCAGGCC--CCGGCTCTGCAC-----CCCACCTCCAAGCTCAAGGACAGGCCC---------------CTTCTCACTGCT----TTCCCGGCCCCT s mm5.chr11 121386347 148 + 121648857 GACCAGGGGTAGTCCTTGC-TGAACTGCTGCCATAATAGTGGCTACATTAAGCTGGGGTCCAGCTGGCTGTGCTCAAACGCTCATCCAAAAGC-CAAGAGCTGTCACTTAGTGGAATCTTGACTCCTTACTGCTCCACTCTCCAGGCCCT s rn3.chrUn 69918670 143 - 75822765 -----GGGGAAGTCTTTGC-TTAACTGTTGCCATAATAGTGGCTATATTGACCTGGGGTCCAGCTGACTGTGCTCCAACCCTCATCCAAAAGC-TAAGAGCTATCCCTCGGTAGAATCTTGACTCCTTACTGCTCCACTCCCCAGGCCCT a score=2283.0 s hg17.chr17_random 972829 47 + 2618010 GGCATGGAGTTGGGGCTGGGCAGGGGTCTCCAAGTGTGGCGCGAAGG s panTro1.chr19 82466930 47 + 82489036 GGCATGGAGTCGGGGCTGGGCAGGGGTCTCCAAGTGTGGCGCGAAGG s rn3.chrUn 69918813 20 - 75822765 ---------------------------ACCCAACTACCCAATACAAG a score=31397.0 s hg17.chr17_random 972876 257 + 2618010 --CTGTCCCCATGCCCACCCTCT------------CCTGTGAGCTGCACCGGGTCTGTCTGATCAGGACACAGAACTGCAGGGGCACCCTGTGTATCAGCTGGACTTGTTTGTTCTGTTT-----------TCCCA-----------TTTAACAGGTCTGGCCCTTGGTAGAAAGGGCACCTGTTC-TCTGACGATGTCTAAGTATCTGGGACACCCCTTGGCAGCTTTCTGCTGTTACATTGTACTTTTCTCTGGGAATTTCCACG---CTAGATGGCAGAGTCTGGGGTCAGCTG s panTro1.chr19 82466977 257 + 82489036 --CTGTCCCCATGCCCACCCTCT------------CCTGTGAGCCGCACCGGGTCTGTCTGATCAGGACACAGAACTGCAGGGGCACCCTGTGTATCAGCTGGACTTGTTTGTTCTGTTT-----------TCCCA-----------TTTAACAGGTCTGGCCCTTGGTAGAAAGGGCACCTGTTC-TCTGACGATATCTAAGTATCTGGGACACCCCTTGGCAGCTTCCTGCTGTTACATTGTACTTTTCTCTGGGAATTTCCACG---CTAGATGGCAGAGTCTGGGGTCAGCTG s mm5.chr11 121386529 219 + 121648857 --CTCCCCTCTCATCATTCTTGT------------CCTTTGAGCTGCACTGTGGC-ACCTGAT-GGTACCTAGAACTACAAA----------GCATTTTCGTTACTTTCTTGTTCTTACTTGGAGAGCATGTGCTG-----------TGTAGCCGAT---GCCC--------AGTGGCATATCTTTGTCTGACAGTATC--AATATC--------------GCAGACTTGTGCTCAT-CATTGAACTT---TCAAAAGGCTGCCATGTGACTAGA--GCAGATTC--------ACGT s rn3.chrUn 69918833 233 - 75822765 GTGCTCCCTGTTGCCTCCCCTCTCATTATTCTTGCCCTTTGAGCTGCACTGCGAC-ACCTGAT-GTGACCCAGAACTGCAGA----------GCACTTTGCTTATTTCCTTGTTCTTACC-----------TGGAGGGTGTGTGCTGTATAGCTGAT---GCCC--------AGTGGAATGTCTTTGTCTGACAGTATC--AATATC--------------ACAGACTTCTGCTCAT-CATTGAGCTT---TCAAAAGGCTGCTATGTGACTAGA--GCAGGTTC--------ATGG a score=11489.0 s hg17.chr17_random 973133 75 + 2618010 CCCGTTCC-AGTGCCCATCGATGCGGGGGCAGGGGGAGG--TGCG--GTGGTCT-TGCTGTGTGCTTGCCTTTGCTCAC---------------------TC s panTro1.chr19 82467234 75 + 82489036 CCCGTTCC-AGTGCCCATCGATGCGGGGGCAGGGGGAGG--TGCG--GCGGTCT-TGCTGTGTGCTTGCCTTTGCTCAC---------------------TC s mm5.chr11 121386748 94 + 121648857 CCAGCTCT-AATGCCTTTGACAGC-----CAGGCACATG--CCCATTGTGACATGTGCTGTGTGCCTGCCACTGCTGACATAGCCCATTAGATTTGCTGACC s rn3.chrUn 69919066 95 - 75822765 CCAGTTCTGAATGCCTTGGACAGC-----CAGGGACATACCCAGG--GCGACATGTGCTATGTGCCTGCCATTGCTGACAGAGCCCATTAGATTTGCTGACC s canFam1.chrUn 6323227 64 + 91062872 CCCGTACC-AGGGTCCTGGAGTGCGGGGTCAGGGCCAGC--CCTG--------------GCGCACTTGCCCCTGGCGAC---------------------CC a score=3894.0 s hg17.chr17_random 973208 10 + 2618010 CCTGTCCCCA s panTro1.chr19 82467309 10 + 82489036 CCTGTCTCCA s mm5.chr11 121386842 10 + 121648857 ACTGTTGTCT s rn3.chrUn 69919161 10 - 75822765 TCTGTCTTCT s canFam1.chrUn 6323291 10 + 91062872 ACTGACCCCG s galGal2.chr18 5994948 10 - 8919268 CCCTTCCTCA a score=-8111.0 s hg17.chr17_random 973218 14 + 2618010 ------TCTCCTTCCCC---GCA s panTro1.chr19 82467319 14 + 82489036 ------TCTCCTTTCCC---GCA s mm5.chr11 121386852 10 + 121648857 ------TCTTCTTC-------TA s rn3.chrUn 69919171 7 - 75822765 ------TCTTC----------TA s canFam1.chrUn 6323301 13 + 91062872 ------TCTCCTTGCCC----CG s galGal2.chr18 5994958 17 - 8919268 ------CATCATTTTTGTGTTCC s danRer1.chr3 6358989 14 - 31142523 TTTCTGTCTTCCTG--------- a score=343868.0 s hg17.chr17_random 973232 329 + 2618010 CAGCCGTTCGAGGCTCCATCCAGCAAGTTACCCACGAGCCTGAGCGGCAGGACTCAGCCATCCACCTGCGCGTGAGCAGACTCTATCGGCAGAAAAGCAGGGTCTTCGAGCCGGTGCCCGAGGGTGACGGC------CACTGGCAGGGGCGCGTCAGGACGCTGCTGGAGTGTGGCGTGCGGCCGGGGCATGGCGACTTCCTCTTCACTGGCCACATGCACTTCGGGGAGGCGCGGCTCGGCTGTGCCCCACGCTTCAAGGACTTCCAGAGGATGTACAGGGATGCCCAGGAGAGGGGGCTGAACCCTTGTGAGGTTGGCACGGACTGA-----CTCCG--------T s panTro1.chr19 82467333 337 + 82489036 CAGCCGTTCGAGGCTCCATCCAGCAAGTTACCCACGAGCCTGAGCGGCAGGACTCGGCCATCCACCTGCGCGTGAGCAGACTCTATCGGCAGAAAAGCAGGGTCTTCGAGCCGGTGCCCGAGGGTGACGGC------CACTGGCAGGGGCGCGTCAGGACGCTGCTGGAGTGTGGCGTGCGGCCGGGGCATGGCGACTTCCTCTTCACTGGCCACATGCACTTCGGGGAGGCGCGGCTCGGCTGTGCCCCACGCTTCAAGGACTTCCAGAGGATGTACAGGGACGCCCAGGAGAAGGGGCTGAACCCTTGTGAGGTTGGCACGGACTGA-----CCCCGGGGGTCCTT s mm5.chr11 121386862 333 + 121648857 CAGTTGTCCGAGGCTTCATTGAGGACGTCACACATGTACCAGAACAGCAAGTGTCAGTCATCTACCTGCGGGTGAACAGGCTTCACAGGCAGAAGAGCAGGGTCTTCCAGCCAGCTCCTGAGGACAGTGGC------CACTGGCTGGGCCATGTCACAACACTGCTGCAGTGTGGAGTACGACCAGGGCATGGGGAATTCCTCTTCACTGGACATGTGCACTTTGGGGAGGCACAACTTGGATGTGCCCCACGCTTTAGTGACTTTCAAAGGATGTACAGGAAAGCAGAAGAAATGGGCATAAACCCCTGTGAAATCAATATGGAGTGA-----CTTGCAGGG----T s rn3.chrUn 69919178 333 - 75822765 CAGTTGTCCGAGGCTTCATCGAGGATGTCACCCATGTACCAGAACAGCAAGTGTCAGTCATTCACCTACGGGTGAGCAGGCTCCACAGGCAGAAGAGCAGGGTCTTCCAGCCAGCTCCTGAGGACAGTGGC------CACTGGCTGGGCCATGTCACAACACTGTTGCAGTGTGGAGTACGACCAGGGCATGGAGAATTCCTCTTCACTGGACATGTGCACTTTGGGGAGGCACAACTTGGATGTGCCCCACGCTTTAGTGACTTTCAAAAGATGTACAGGAAAGCAGAAGAAAGGGGCATAAACCCTTGTGAAATAAATATGGAGTGA-----CTTGCAGGG----T s canFam1.chrUn 6323314 321 + 91062872 CAGTCGTCCGAGGCTCCATCCAGAACGTCACGCACGTGCCGGAGCAGCAGGAGTCGGCCATCCACCTGCGCGTGAGCCGCCTCTACCGGCAGAAGAGCAGGGTGTTccggccggccccggagggcggcgg---------ctggcgggggcgggTGGCCACGCTGCTGGAGTGCGGCGTGAGGCCCGGGCGCGGCGAGTTCCTCTTCACCGGCCACATGCACTTTGGGGAGGCCCGCCTTGGCTGCGCCCCACGCTTCAAGGACTTCCAGAGGATGTACCAGGACGCCGAGGAGAGGGGCCTGAACCCCTGCGAGATGGGCAAGGACTGA------------------g s galGal2.chr18 5994975 335 - 8919268 CAGTGATCAGAGGCTCCATTCAAGATGTAACAAATGAGGCAGAAGAGCAAGAATCCATAATTCACGTTGGCGTCAACAAACTGTACAGGCAGAAGAGCAAAGTCTTTCAGC---TCACGGGGGAGAGTGGG------AACTGGCGAGGACAAATAAAGACCCTGCTGGAGTGTGGGGTGAGACCAGGAGATGGAGACTTCCTCTTCACGGGACGCATGCACTTTGGGGAAGCCAGGTTAGGCTGTGCCCCTCGATTTAAAGACTTCCAAAGGATGTACAAAGAAGCAAAAGACAAAGGGCTAAATCCATGTGAAATTGGCCCAGATTGAAACCCCCTGTTTGG----C s fr1.chrUn 125518091 334 - 349519338 CAGTGGCCCGAGGCTCCATCGCCGCCGTCTCCCACGACCCCGAGCGTCAGACCTCGCTGGTGGAGGTGCGTGCGGCCAGGGTCTACCGGCAGCACGGTCAGGTGTTTGAGCCGATGCC---GGCTGAGGCC------TCCTGGCGCGGGCGTATCCGCACGCTCCTGCGGTGCCACGTGAGGCCCGGAGATGGCGAGTTTCTCTTCACGGGCTCGGAGCACTTCGGGGAGGCCTGGTTAGGCTGTGCCCCGCGATACAAAGACTTCCTGTCCGTCTACAGGGCCGCCTGGGCGCGCGG-CGGAACTCCTGCGACTTTCCTTTGGACTGAGGAAGCGTGCGGCG----T s danRer1.chr3 6359003 323 - 31142523 CAGTGGCGCGGGGGAGAATTCTTGGTGTATCCGAGGAG---GATGAACAGACCTCAGTCAC---AGTGTCCTTAAGTCACCTATATAGACAGAAGACTCAAGTGTTT------GTGTCAGGGGGCGGCCGGGCTAAACGCTGGACAGGCTTTGTGAAGATGTCCAGGCAGTGCGGGGTTAAACCAGGGGACGGCGAGTTTCTTTTCACCGGGACTGTGCGATTCGGAGAGGCCTGGCTCAGCTGCGCTCCACGCTACAAGGACTTCCTTAGGGTGTACCAGGACGCGCGGCAGCAAGGGACCAACCCCTGTCATTTGGACACAGACTGA--ATTCTT----------- a score=-25930.0 s hg17.chr17_random 973561 91 + 2618010 GGGCCGCTGCCCTTCCTCTCCTGATGAG------TCACAGGCTGCGGTGG-------GCGCTGCGGTC-CTGGTGGGGCCGTGCGGTGAGGGCCGCGCGCTGGGA s panTro1.chr19 82467670 91 + 82489036 GGGCCGCTGCCCTTCCTCTCCTGATGAG------TCACAGGCTGCGGTGG-------GCGCTGCGGTC-CTGGTGGGGCCGTGCGGTGAGGGCCGCGCGCTGGGA s mm5.chr11 121387195 83 + 121648857 GACACAGTACTGTTGTCCTTCAGATGAG------CCATG---TTTTGTGG-------GCTCAGTCGCT-CTATCATATCC---TGATAGAGATTGCAGACTGG-- s rn3.chrUn 69919511 75 - 75822765 GACACCGTACTGCTGTCCTTCAGATGAG------CCATG------------------GCTCAGTTGCT-CTATCAAATCC---CGATAGAGATTGCAGACTGG-- s canFam1.chrUn 6323635 16 + 91062872 gggcc----------------------g------ccccg-----------------------------------------------------------gcggg-- s galGal2.chr18 5995310 101 - 8919268 TGAAGGTCGCTTTTAGCGTTGGGCTGGGAATATTTCCTG-GCTGCGGTGAATACTCTGAACAGTAACTGAGAGCATGGCC---AGATCTGGAGTGCAGGCTGAGA s fr1.chrUn 125518425 76 - 349519338 CCTCCCCGACCCTTGCGCC--------G------GCACG-------GCGG-------GACCCTTCGTG-TGCCAGTGGCACGGCAGTCGGCGTCGCCAGCAGGGA a score=25777.0 s hg17.chr17_random 973652 140 + 2618010 GCC-GCGTGCCC-TGGGCCCAGGCCTGACCCT--GGT--ACC------------GAAGCTG----TGGACGTTCTCGCCACACTCA-------------ACCCCATGAGCTTCCAGCCAAGGATGCCCTGGCCGATTGGAAATGC-TGTAAAATGCAAACTAAGTTATTATATTTT s panTro1.chr19 82467761 140 + 82489036 GCC-GCATGCCC-TGGGCCCAGACCTGACCCT--GGT--ACC------------GAAGCTG----TGGACGTTCTCGCCACACTCA-------------ACCCCATGAGCTTCCAGCCAAGGATGCCCTGGCCGATTGGAAATGC-TGTAAAATGCAAACTAAGTTATTATATTTT s mm5.chr11 121387278 125 + 121648857 -------TGGCA-TGGGCCCAG-------CCT--GGT--GCT------------AGAACTG----GGAAGGTACATGCTGCTCTGA---------------CCCCTTAGGTCCCAGCCAAGGATGCCCTGACCCATTGGAACTGC-TGTAAAATGCAAACTAAGTTATTATATTTT s rn3.chrUn 69919586 129 - 75822765 -------TGGCA-TGAGCCCCG-------CCT--GGT--GCT------------TGAACTGGGAAGGGAGGTACATGCTGCTCTGA---------------CCCCTTAGGTCCCATTCAAGGATGCCCTGACCCATTGGAAATGT-TGTAAAATGCAAACTAAGTTATTATATTTT s canFam1.chrUn 6323651 75 + 91062872 -------tg-----gggcccgg--------------------------------------g--------------------------------------------------cccggccAAGGACTCCCCGGCTGGTGGGAAATGT-TGTAAAATGCAAACTAAGTTATTATATTTT s galGal2.chr18 5995411 137 - 8919268 CCCTGCAGGACA-CATCTGCAG-------CCTGCGGT--GCTGTTAGACTCATGGAAGCAA----CAGAGGTACGAGC-----------------------TCAGAAGGCTGCCAAGCAAGGAAGGCTGGATTTTTAACCAATCT-TGT-CCTTATGAATTAAGTTATTATATTTT s fr1.chrUn 222070940 158 - 349519338 ---------CCAGTGGGCTCAG---TGGACAT--GGTCGACCTCGGTTGACCTCAATGCCA----CGGGGAGTCGGACTGCATCTACATGCAGACGAGGAGCTCTGGAATTTTAAATGTAGCAAGACGTTGTTTTTTAAAAATGTGTATAAAATGTGAATGAACGTTGTATATTTT a score=44119.0 s hg17.chr17_random 973792 308 + 2618010 TT-TTTGGTAAAAAAGAAATGTCCATAGGAAA----------CAAATTCCCGTGTCTT----------------------AAAACGCCTTGGTGTGCCGTCTGATACTGTTCTC-TAAAGACGTTAGGAGT---CACGGCATCT---GGCCTGCGGT-TGGGTGAAGCACTGGCCG---------TTG-GGCACAG---------------TGGATGTGTGAAA-AGGTGCC-----------ATTCAGAGTTGTTATTCTCATGACGGAAGTTTT-GGAGCCAAATAATACGT-TTTTTATTTTCATTTTAT-------TTTTAAAGGATGAGCTTT----------GGTCCTTT---TCAGGCCGC----CGGTTGTTTCCGTTCCCGAG-AATAAAGA--CGAGGATCCG-----------------------AC s panTro1.chr19 82467901 308 + 82489036 TT-TTTGGTAAAAAAGAAATGTCCATAGGAAA----------CAAATTCCTGTGTCTT----------------------AAAACGCCTTGGTGTGCCGTCTGATACTGTTCTC-TAAAGACGTTAGGAGT---CACG---TCTAAGGGCCTGCGGT-TGGGTGAAGCACTGGCCG---------TTG-GGCCCTG---------------AGGGTATGTGAAA-AGGTGCC-----------ATTCAGAGTTGTTATTCTCATGACGGAAGTTTG-AGAGCCAAATAATACGT-TTTTTATTTTCATTTTAT-------TTTTAAAGAATGAGCTTT----------GGTCCTTT---TCGGGCCGC----TGGTTGTTTCCGTTCCCGAG-AATAAAGA--CCAGGATCCG-----------------------AC s mm5.chr11 121387403 304 + 121648857 TT-TT--GTAA---------------------------------------------------------------------AAGATGCCTTGGTGTGCCATTTAATAGTGTTTTTACAAAGTTATTTTCAGG---CATTGGATTT---GGCCT--------GGTATATTGGTGGGAG---------CTA-GGTTATG--------------------GTGTGCAG-TGATGGC-------TATGGCTCAGCCTTGTTATTCCTGTGATGGAAATGTA-TGGAGCAAATACTTTCTAATTTCCCCTTCATTTTAT-TTTCTATTTTAAAAGACCATCTTT-GCCGTTGA-GAACCTTT---CCAGACTGTATGGAGGCTGCTCCCATTCCAGGG-AGTAAAGA--CCAGGATCTGAGACTAGTATTACATCCATCTTAAC s rn3.chrUn 69919715 323 - 75822765 TT-TT--GTAA---------------------------------------------------------------------AAGATGCCTTGGTGTGCCATTTAATAGTGTTTTTACAAAGTTATTTTCAGC---CATTGCATTT---GGCTTGATACATCGATGGGAGGTAGGTTG---------TGG-TGCCCAG----------------TGATGGCTATTG-AGGTTTCCATGGC-TATGACTCAGCCTTGTTATCCTTGTGACAGAAATGTA-TGGACCAGATACTTTTTCATTTCCCCTTCATTTTAGGTCTGCATTTTAAAAGACCATTTTT-GCAGTTGA-GAACCTTT---CCAGACTGTATGTAGGCGGCTTCCATTCCAGAG-AACAAAGA--CCAGGATCTGAACCCAATATTACATCCATCTTAAC s canFam1.chrUn 6323726 306 + 91062872 TTGTTTTTTTAAAAAGAAACGTCCATAGGAAA----------CAAACTCTGGTGTCTT----------------------AAAATGCCTC-GTGAGCCGTTTAGTGCTATTTCC-CACAAGCCCCTGAGGT---CATCACGTTG---GGCGCAGCGT-CGGGGGCCACCCAGGCCG---------TGGCTGCACAG-----------------GACGCCTGGAGCCAGGGCC-----------ATTCCGAGCTGT--TCCCTACGACAGAAATTCACGGAGCCAAATACTTAGT--------TTCTGTTTTGT------GTTTCAAAGAATGGGCTTT-GCGACCCATGATCTCTC---AGGGGCTAC------ACTGTTTCCGTTCCAGAG-AATAAAGA--CCAGCAGCTG------------------------- s galGal2.chr18 5995548 377 - 8919268 TT-TA--GTGA--------CTTCTGTAGGAAAACAAACCAAGAAAACTTCCATGTCTTAATAAAAACCCAAATGAAAGCCAACATGCCTTTGTAT-CTTTTTAATACTAATTTT-TAAAAGTGTCTTAAGCTGATGTAGCATTT---GGTATGGTGT-ATTCTGTATAAATGGCCGAGAATGTGATAG-AGCACAGTAAACCATCTTAACATGGATGCTTTGTA-AAAAGCT--TGGTGTACAATTCAAAGTTGT--TTCTTATGACAGAAATTTATGGAGCCAAA---CTCGTGTGTGTGTTCTTTTTTTAT--------TTGAAAGAATGTACAATCGCCGCCTG-CAATTTTTCGGCCAGGCTGG---CAAATTCTTTCCATTCCAGAGAAATAAAGGTCCCTGGATTTG-----------------------AC a score=9107.0 s hg17.chr17_random 974100 182 + 2618010 CAGCCAGA-AGCCGGAGTCTGTCTTTCGCCAGGTCCGGT-GCCCACGGCCCG-TGTTC--AGGGC------CTCGCTGGAC-GTACCCCAGGGCGCCACCCTGCCTCGGCAGACACG-------CTTGCTCCG-CCCGGCGACTGTCCCTCAGCGCCTGCTGCTGCATTTC----------CATTAATGCAGGTCCTGCCCTGTGGCCCCAG s panTro1.chr19 82468209 182 + 82489036 CAGCCAGA-AGCCAGAGTCTGTCTTTCGCCAGGTCCGGT-GCCCACGGCCCG-TGTTC--AGGGC------CTCGCTGGAC-GTACCCCAGGGCGCCACCCTGCCTCGGCAGACACG-------CTTGCTCCT-CCCGGCAACTGTCCCTCAGCGCCTGCTGCTGCATTTC----------CATTAATGCAGGTCCTGCCCTGTGGCCCCAG s mm5.chr11 121387707 190 + 121648857 CCATCAGA-TG--GGTACCTGCATTGAACCTTCTCTGCTCAGCTATGGCCTGCTGTCCCAAAGACCTTTTGCTCTCTGGACAGTTCCAGATGGTGCTGCCTGGCTTAAG-GGACTTGTTCCTCCCTTGCTCCTACCAGGCCACTGT-------TGCTTTCTGCATCTGTCC----------CACTGAACCA-GTCTTGTCCTTTGACCCTGA s rn3.chrUn 69920038 186 - 75822765 CCATCGGA-TG--GGTACCTGTATTGAACCCTTTCTGCTCAGCTGTGGCCTGCTGTCCC-AAGACCTTTTGTTCACTGGACAATTGTAGATGGTGCTGCCTGGCTT--------GTGCTCCCCCCTTGCCATTACCAGGCCACTCT-------TGCCTTCTGCATCTGTCCACACCTTTTTCACTGAACCA-GTCTT------TGACCCCAG s canFam1.chrUn 6324032 138 + 91062872 CAGGAAGAGTG--GGCGGCCGTCCGCAGCCCCGTGGG---GGGCGTGG------------GGCAC------CTCGCGGGCC-------------GCATCCCGGCCTCTCCCGCGCTC-------CGCACCCCT-GCAGGGGCCCCA-------CGGCCGCGGCG-----------------CTCTG------GGCCTTCCACCAGGGCCCAG a score=6435.0 s hg17.chr17_random 974282 37 + 2618010 CCTGCCCACAGTGCAGGGGCCCACAGCTAGTCTCTAG s panTro1.chr19 82468391 37 + 82489036 CCTGCCCGCAGTGCAGGGGCCCACAGATAGTCTCTAG s mm5.chr11 121387897 31 + 121648857 GTTTCCCCAAATGCA------CACATCAAATCCCTGA s rn3.chrUn 69920224 31 - 75822765 GTTTCCCCAAATGCA------CAGAGCAAACCTCTGA a score=7748.0 s hg17.chr17_random 974319 86 + 2618010 ACGCCCAGGAGCT-GGTCTGAACCCAGGTTGGTGACCCCATGTCCCCAAAGGATGCGGCT----------ACCAGAACAAA-------TCACCACCGACTGCGG s panTro1.chr19 82468428 86 + 82489036 ACGCCCAGGAGCT-GGTCTGAACCCAGGTTGGTGACCCCATGTCCCCAAAGGATGCggct----------gccagaacaaa-------tcaccaccgactgcgg s mm5.chr11 121387928 84 + 121648857 ATACCAAGGGACT-AACCTAC-------TTAATGG-CCCATTTCTTCAGAGGGTGTGGGTTTTCCCTATAGTAAGA--AAA-------TCTCCACAAGTT--GA s rn3.chrUn 69920255 86 - 75822765 ATACCAAGGGACTAAACCTAT-------TTAATGACCCCATTTCTTCAGACGGTGTGGGTTTTTTCTCCATTAAGA--AAA-------TCTCCACAAATT--GG s fr1.chrUn 316934829 83 + 349519338 ACCCGCAGGTACT-GACCCCC---CAGGTCAAAGA-----GGTTCATGGAGGCCACGGCG----------TCCTGAGCAGACTGGGCCTTATCATATTCT--AC a score=3438.0 s hg17.chr17_random 974405 22 + 2618010 GGCTGAAACAA-----CCTCGTTCTCT s panTro1.chr19 82468514 22 + 82489036 ggctgaaacaa-----cctcgttctct s mm5.chr11 121388012 27 + 121648857 AGCTTAAACAGTAGGCTTTCGTTCATA s rn3.chrUn 69920341 27 - 75822765 AGCTTAAGCAGCAGGCTTTCATTCATA s fr1.chrUn 316934912 22 + 349519338 AGAGAAAATGA-----TCACATGACCA s danRer1.chrUn 208003439 22 - 367113659 GGTCGAGTCAA-----CCTCTCTCTCC a score=3716.0 s hg17.chr17_random 974427 32 + 2618010 G-AGTTCCTGAGGCCACAATCCAAAGTCACGGT s panTro1.chr19 82468536 32 + 82489036 g-agttcctgaggccacaatccaaagtcacggt s mm5.chr11 121388039 23 + 121648857 C-AGTCCTGGAAGCCAGAAT---------GGGT s rn3.chrUn 69920368 23 - 75822765 C-AGTCCTGGAAGCCAGAAC---------GGGT s fr1.chrUn 316934934 33 + 349519338 CAAGTTTCTGCACCTCCACCTCTAATTTAAGTT a score=-516.0 s hg17.chr17_random 974459 76 + 2618010 GTGGGCAGAGCC---TCTCCCTCCAGGGCTCCAGGGGAGAACGCTTCATCT-TCTCCTCAGCCTCCAGGGGTT------------------CCAGGGA s panTro1.chr19 82468568 76 + 82489036 gtgggcagagcc---tctccctccagggctccaggggagaacgcttcatct-tctcctcagcctccaggggtt------------------CCAGGGA s mm5.chr11 121388062 67 + 121648857 GTGAGCAGAATCACATTTCCTCCGGAGACTCCAGGAGGGA---CTTTAT----------AGCTTCTGGTGACT------------------CCAGGAA s rn3.chrUn 69920391 67 - 75822765 GTGAATGGAATCACATTTCCTCTGGAGGCTCCAGGAGGGA---CTTTAA----------AGCTTCTGGTGACT------------------CCAGGAA s fr1.chrUn 316934967 30 + 349519338 --------------------CTTCAGGATTCTTGGAGACA---ATGTGT------------------GGGG--------------------------- s danRer1.chrUn 208003622 91 - 367113659 GTCGGGGCACTC---TCTCTCTCCTCTGCCCGGCGGGGCA---CTCTCTCTCTCTCCTCTGCCCGGCGGGGCTCTCTCTCTCTCTCCTCTGCCCGGC- a score=5216.0 s hg17.chr17_random 974535 58 + 2618010 GG----------------------------ACCCTTCGTCTTCTCCTCAGCCGGGGGTGACCCTTCGTCTTC----------------------TCCTCAGCCGGGGC s panTro1.chr19 82468644 86 + 82489036 GGATCTTCATCTTCTCCTCAGCCGGGGGCAACCCTTCGTCTTCTCCTCAGCTGGGGGGGACCCTTCATCTTC----------------------TCCTCAGCTGGGGG s fr1.chrUn 316934997 78 + 349519338 AG----------------------------GCCCGACGTCCTCCGCCCGG--GGGGGAGGCCCGACGTCCTCCGCCCGGGGGGGAGGCCCGACGTCCTCCGCCCGGGG s danRer1.chrUn 208003713 57 - 367113659 GG----------------------------GGCACTCTCTCTCTCCTCTGCCCGGCGGGGCACTCTCTC-TC----------------------TCCTCTGCCCGGCG a score=9652.0 s hg17.chr17_random 974593 85 + 2618010 GACCCTTCGTCTTCTCCTCAGCTGGGGG-GGACCCTTCGTCT-TCTCCTCAGCCAGGGGGGGACC-----------------------------CTTCATCTTCTCCTCAGCCTCC s panTro1.chr19 82468957 115 + 82489036 GACCCTTCGTCTTCTCCTCAGCCGGGGGAGGACCCTTCGTCT-TCTCCTCAGCCAGGGGAGGACCTTCATCTTCTCCTCCGTAAGGGGAGGACTCTTCATCTTCTCCTCAGCCTCC s fr1.chrUn 316935076 74 + 349519338 GGCCCGACGTCCTCCTCCC-----GGGG-AGGCCCGACG------TTCTCCGCCCGGGGAGG-CC-----------------------------CGACGTCCTCCTCCCGACGTCC s danRer1.chrUn 208003770 86 - 367113659 GGGCACTCTCTCTCTCCTCTGCCCGGCG-GGGCACTCTCTCTCTCTCCTCTGCCCGGCGGGGCTC-----------------------------TCTCTCTCTCTCCTCTGCCCGG a score=-8999.0 s hg17.chr17_random 974678 62 + 2618010 --GGGGGTTC------------------CAGGG-AGGACCC--TTTGTCTTCTCCTCAGC--------------------------------------------------------CTCCGGGG-----------------GTTCCTGGGAGGATCTT s panTro1.chr19 82469072 62 + 82489036 --GGGGGTTC------------------CAGGG-AGGACCC--TTTGTCTTCTCCTCAGC--------------------------------------------------------CTCCGGGG-----------------GTTCCTGGGAGGATCTT s canFam1.chrUn 6324446 57 + 91062872 --GGAGGCTG------------------TAGGGCAGGACGCGGTCCGTCTCCT--GCAGC--------------------------------------------------------CTCTGGGG-----------------GCTGCCGAGCG------ s fr1.chrUn 316935150 48 + 349519338 --TGACGTCC------------------CGGGG-AGG-CCC--GACGTCCTCCTCCCGG------------------------------------------------------------GGGGG-----------------AGGCCCGA--------- s danRer1.chrUn 208003856 155 - 367113659 CGGGGCACTCTCTCTCTCCTCTGCCCGGCGGGG-CACTCTC--TCTCTCCTCTGCCCGGCGGGGCACTCTCTCTCTCTCCTCTGCCCGGCGGGGCACTCTCTCTCTCTCCTCTGCTCGTCGGGGCACTCTCTCTCTCCTCTGCTCGTCGGGGCACACT a score=4305.0 s hg17.chr17_random 974740 80 + 2618010 CATCTTCTCCTCAGCCAGGGGAGGAAC---CTTCATCTTCTCAGCCAGGGGGAGGACCCTTCATCTTCTCCTCTGCCAGGGGA- s panTro1.chr19 82469134 79 + 82489036 CATCTTCTCCTCAGCCAGGGGAGGAAC---CTTCATCTTCTCAGCCAGGGG-AGGACCCTTCATCTTCTCCTCTGCCAGggga- s canFam1.chrUn 6324503 9 + 91062872 -------TCCTC-----------------------------------GGGG--------------------------------- s danRer1.chrUn 208004011 83 - 367113659 CTCTCTCTCCTCTGCCCGGAGGGGCACTCTCTCTCTCTCCTCTGCCCGGGG-GGGCACTCTCTCTCTCTCCTCTGCCCGGCGGG a score=5617.0 s hg17.chr17_random 974820 33 + 2618010 GGACTCTTCATCTTCTCCTTGGCCTCTGGGGGC s panTro1.chr19 82469213 33 + 82489036 ggactcttcatcttctccttggcctctgggggc s canFam1.chrUn 6324512 17 + 91062872 --------------TGCCTTGGCCCCCAGAG-- s danRer1.chrUn 208004305 33 - 367113659 GGGCTCTTTCTCTCCCCCTCTGCCCGTTGGGGC a score=29432.0 s hg17.chr17_random 974853 208 + 2618010 TCCAggtgctccttgatggtggctgcatcactccagtctctgcctccgtggccacacggcttctccctgtgtctgtg-tccagatctttctcta----ggacattggtcactggattggggcccacaccagt-------gacctcgtcttaaaccgattacgtccgcaaagaccccatttccaaataaggtcacactcagcggtTCCTGGTGGACATGAA s panTro1.chr19 82469246 212 + 82489036 tccaggtgctccttgatggtggctgcatcactccagtctctgcctccgtggccacacggcttctccctgtgtctgtg-tccagatctttctctaactaggacattggtcactggattggggcccacaccagt-------gacctcgtcttaaaccgattacgtccgcaaagaccccatttccaaataaagtcacactcagcggttcctggtggacatgaa s canFam1.chrUn 6324529 187 + 91062872 ------------------------GCGTCATTCTAGGCTCTGCCTCCttctcc--------cctccgcgtgtttgggttccaacccctcctcttacaaggacaccagttacgggattagtgctcaccccagtccagtgcagcctcctctaagttcg-ttacatctgcaaataccctgtctccaaataggttcacagtcgtaggttctgggtacatgggaa a score=1763.0 s hg17.chr17_random 975061 15 + 2618010 ATTTGGGGTACACCA s panTro1.chr19 82469458 15 + 82489036 atttggggTACACCA s canFam1.chrUn 6324716 15 + 91062872 ttggggaggacgcta s fr1.chrUn 59123635 14 - 349519338 ATCTGGAGTACAGG- a score=13665.0 s hg17.chr17_random 975076 60 + 2618010 TGCCCCAGCACAGGGGGTCCCTGGGAGTGT-----CAGTTAACCAGACCCCAGCCTGCATCCCCA s panTro1.chr19 82469473 60 + 82489036 TGCCCCAGCACAGGGGGTCCCTGGGAGTGT-----CAGTTAACCAGACCCCAGCCTGCATCCCCA s rn3.chr5 24436894 60 - 173106704 TGGCTTAGCACAGGTGGGTCTTGGGATCAT-----TACCCAAGTAGACCGAAGCCTGTATCTCCA s canFam1.chrUn 6324733 57 + 91062872 caccccaCTAC--GGGGTCAGTGGG-GTGT-----CCAGTCATCAGACCTAAGCCTGCATCCATA s fr1.chrUn 59123649 65 - 349519338 TGCACCGAGACAGACCAGCATCTGGAGTACAGGTGCACCCAGACAGACCAGCATCTGGAACGTCA a score=10174.0 s hg17.chr17_random 975136 122 + 2618010 -TTGATGAATCAGGCAGTTCCTCCCGTGCAGCCGCTAAGA-GCAAAGGGGACCTGGGAGAGGGTGATGTGGTCAGTGGGCACCATGCCGGCCTTGCCAAATGCTCAGGCACTCTGGGTAAGCAC s panTro1.chr19 82469533 122 + 82489036 -TTGATGAATCAGGCAGTTCCTCCCGTGCAGCCGCTAAGA-GCAAAGGGGACCTGGGAGAGGGTGGTGTGGTCAGTGGGCACCATGCCAGCCTTGCCAAATGCTCAGGCACTCCGGGTAAGCAC s canFam1.chrUn 6324790 94 + 91062872 -CCTGTGAGTCAGGTGGTTTCCCCCAAGAACCTGCTGAGGCACAAGGGGGCTCTGGGAGAGGACAC--TGGTCAGTGAGCCCT----------------AAACTCTGGTACAC----------- s fr1.chrUn 59123714 120 - 349519338 TCTCATGATTCCAGGGGATGTTCCGGGAAGGCT--TGAGAGACGACACTGCCATCGTTGTGTCGCACCTGCTCAGTGATGCCCCTGCCTGCTCAGTG--ATGCCCCTGCCTGCTCAGTGATGCC a score=-818.0 s hg17.chr17_random 975258 2 + 2618010 -TG s panTro1.chr19 82469655 2 + 82489036 -TG s rn3.chr5 16554459 2 + 173106704 -TG s canFam1.chrUn 6324884 2 + 91062872 -TG s fr1.chrUn 59123834 2 - 349519338 CC- a score=1795.0 s hg17.chr17_random 975260 2 + 2618010 TG s panTro1.chr19 82469657 2 + 82489036 TG s mm5.chr2 15174987 2 - 181686250 TG s rn3.chr5 16554461 2 + 173106704 AG s canFam1.chrUn 6324886 2 + 91062872 TG s fr1.chrUn 59123836 2 - 349519338 TG a score=0.0 s hg17.chr17_random 975262 2 + 2618010 TA a score=571.0 s hg17.chr17_random 975262 3 + 2618010 TAC s panTro1.chr19 82469659 3 + 82489036 TAC s mm5.chr2 15174989 3 - 181686250 CTC s rn3.chr5 16554463 3 + 173106704 CAC a score=0.0 s hg17.chr17_random 975262 2 + 2618010 TA a score=637.0 s hg17.chr17_random 975264 18 + 2618010 CCGGCTCAGATGTTCACT s fr1.chrUn 59123838 18 - 349519338 CCTGCTCAGTGATGCACC a score=4343.0 s hg17.chr17_random 975265 17 + 2618010 CGGCTCAGATGTTCACT s panTro1.chr19 82469662 17 + 82489036 CAGCTCAGATGTTCACT s mm5.chr2 15174992 17 - 181686250 CAGCTCAGGGTCCCTCC s rn3.chr5 16554466 17 + 173106704 TGGCTAGAGTGAGCACT s canFam1.chr16 184724 17 - 60307850 aggcacaggtaaacata s fr1.chrUn 59123839 17 - 349519338 CTGCTCAGTGATGCACC a score=373.0 s hg17.chr17_random 975282 5 + 2618010 GGCTC s galGal2.chrUn 121455653 5 + 165033910 GGTGC s fr1.chrUn 59123856 5 - 349519338 TGCTC a score=3517.0 s hg17.chr17_random 975282 5 + 2618010 GGCTC s panTro1.chr19 82469679 5 + 82489036 GGCTC s mm5.chr2 15175009 5 - 181686250 AGCAC s rn3.chr5 16554483 5 + 173106704 GGCTA s canFam1.chr16 184741 5 - 60307850 ggcac s galGal2.chrUn 121455653 5 + 165033910 GGTGC s fr1.chrUn 59123856 5 - 349519338 TGCTC a score=18836.0 s hg17.chr17_random 975287 35 + 2618010 AGGTGTGC------------------------ACCGGCTCAGATGTTC----ACTGGCTCAGG s panTro1.chr19 82469684 35 + 82489036 AGGTGTGC------------------------ACCGGCTCAGGTGTTC----ACTGGCTCAGG s mm5.chr2 15175014 35 - 181686250 AGGGCTGC------------------------TCCAGCTCAGGGTCCC----TCCAGCACAGG s rn3.chr5 16554488 35 + 173106704 GGGTGAGC------------------------ACTGGCTAGGGTGAGC----ACTGGCTAGGG s canFam1.chr16 184746 35 - 60307850 aggtaagc------------------------acaggcacaggtaagc----acaggcacagg s galGal2.chrUn 121455658 35 + 165033910 AGGGATGC------------------------TCGGGTGCAGGGGTGT----GCAGATGCAGG s fr1.chrUn 59123861 63 - 349519338 AGTGATGCCCCTGCCTGCTCAGTGATGCCCCTGCCTGCTCAGTGATGCCCCTGCCTGCTCAGT s danRer1.chrNA 55519265 35 + 390413307 AGGTGTTC------------------------GTCAGCTCAGGTGTTC----GTCAGCTCAGG a score=3826.0 s hg17.chr17_random 975287 74 + 2618010 AGGTGTGC------------------------ACCGGCTCAGATGTTC----ACTGGCTCAGGTGTTCACCGGCTCAGGTGTTCACTGGCTCAGGTGTGCAC s galGal2.chrUn 121455658 74 + 165033910 AGGGATGC------------------------TCGGGTGCAGGGGTGT----GCAGATGCAGGGGTGCTTTGGTGCAGGAGCGCTCGGGTGTGGGGCTGCTC s fr1.chrUn 59123861 102 - 349519338 AGTGATGCCCCTGCCTGCTCAGTGATGCCCCTGCCTGCTCAGTGATGCCCCTGCCTGCTCAGTGTTGCACCTGCTCAGTGATGCACCTGCTCAGTGTTGCAC s danRer1.chrNA 55519265 74 + 390413307 AGGTGTTC------------------------GTCAGCTCAGGTGTTC----GTCAGCTCAGGTGTTCGTCAGCTCAGGTGTTCTTTAATAGAGGTGTTCGT a score=20021.0 s hg17.chr17_random 975322 39 + 2618010 TGTTCACCGGCTCAGGTGTTCACTGGCTCAGGTGTGCAC s panTro1.chr19_random 57470074 39 - 57627672 TGTGCACCGGCTCAGGTGTGTACCGGCTCAGGTGTGCAC s mm5.chr2 15175049 39 - 181686250 GCTGCTCCAGCTCAGGGTCCCTCCAGCACAGGGCTGCTC s rn3.chr5 16554523 39 + 173106704 TGAGCACTGGCTAGGGTGATCAATGGCTAGGGTGAGCAC s canFam1.chr16 184781 39 - 60307850 agagcacatgcacaggtaagcacaggcacaagtaggcac s galGal2.chrUn 121455693 39 + 165033910 GGTGCTTTGGTGCAGGAGCGCTCGGGTGTGGGGCTGCTC s fr1.chrUn 59123924 39 - 349519338 GTTGCACCTGCTCAGTGATGCACCTGCTCAGTGTTGCAC s danRer1.chrNA 55519300 39 + 390413307 TGTTCGTCAGCTCAGGTGTTCTTTAATAGAGGTGTTCGT a score=-392.0 s hg17.chr17_random 975361 2 + 2618010 TG s panTro1.chr19_random 57470113 2 - 57627672 TG s mm5.chr2 15175088 2 - 181686250 CA s rn3.chr5 16554562 2 + 173106704 TG s canFam1.chrUn 6324888 2 + 91062872 TG s galGal2.chrUn 121455733 2 + 165033910 GG s fr1.chrUn 59123963 2 - 349519338 CT s danRer1.chrNA 55519339 2 + 390413307 CA a score=0.0 s hg17.chr17_random 975363 23 + 2618010 GCTCAGGTGTGTACCGTGCACTG a score=264.0 s hg17.chr17_random 975363 8 + 2618010 GCT-CAGGT s panTro1.chr19_random 57470115 8 - 57627672 GCT-TAGGT s mm5.chr2 15175090 7 - 181686250 GCT-CAGG- s rn3.chr5 16554564 8 + 173106704 GCT-AGGGT s canFam1.chrUn 6324890 9 + 91062872 GCTGCAGGT s galGal2.chrUn 121455735 7 + 165033910 GGC-AGGG- s fr1.chrUn 59123965 8 - 349519338 GCT-CAGTG a score=1023.0 s hg17.chr17_random 975371 7 + 2618010 GTGTACC s canFam1.chrUn 6324899 7 + 91062872 GGGTGCT s galGal2.chrUn 121455742 7 + 165033910 GTGTGCA s fr1.chrUn 59123973 7 - 349519338 TTGCACC a score=3181.0 s hg17.chr17_random 975371 7 + 2618010 GTGTACC s panTro1.chr19_random 57470123 7 - 57627672 GTGTACC s mm5.chr2 15175097 5 - 181686250 --GTCCC s canFam1.chrUn 6324899 7 + 91062872 GGGTGCT s galGal2.chrUn 121455742 7 + 165033910 GTGTGCA s fr1.chrUn 59123973 7 - 349519338 TTGCACC a score=139.0 s hg17.chr17_random 975378 2 + 2618010 -GT s panTro1.chr19_random 57470059 2 - 57627672 -GT s rn3.chr5 16554572 2 + 173106704 -GA s canFam1.chrUn 6324906 2 + 91062872 -AT s galGal2.chrUn 121455749 3 + 165033910 GAT a score=0.0 s hg17.chr17_random 975378 3 + 2618010 GTG a score=-42.0 s hg17.chr17_random 975380 1 + 2618010 G s panTro1.chr19_random 57470061 1 - 57627672 T s rn3.chr5 16554462 1 + 173106704 G s canFam1.chrUn 6324908 1 + 91062872 G a score=195.0 s hg17.chr17_random 975381 5 + 2618010 CACTG s panTro1.chr19_random 57470062 5 - 57627672 CACTG s mm5.chr2 15175102 4 - 181686250 -TCCA s rn3.chr5 16554463 5 + 173106704 CACTG s canFam1.chrUn 6324909 5 + 91062872 CCGTG s fr1.chrUn 59123980 5 - 349519338 TGCCT a score=32722.0 s hg17.chr17_random 975386 55 + 2618010 GCTCAGGTGTGCACCGGCTCAGGTGTGTACCGGCTCAGGTGTGCACCGGCTCAGC s panTro1.chr19_random 57470067 55 - 57627672 GCTCAGGTGTGCACCGGCTCAGGTGTGTACCGGCTCAGGTGTGCACTGGCTTAGG s mm5.chr2 15175106 55 - 181686250 GCATAGGGCTGTTCCAGCTCAGAGTCTCTCCAGCTCAGGGCTGCTCCAATTCAGA s rn3.chr5 16554468 55 + 173106704 GCTAGAGTGAGCACTGGCTAGGGTGAGCACTGGCTAGGGTGAGCACTGGCTAGGG s canFam1.chrUn 6324914 27 + 91062872 GCTCAGGT----------------------------AGGTGTGCGCTGGCTCAGG s galGal2.chrUn 121455752 53 + 165033910 --GCAGGGGTGCTTAGGTGCAGGAGTGCTCAGGTGTGGGGCTGCTCAGGGGCAGG s fr1.chrUn 59123985 55 - 349519338 GCTCAGTGATGCACCTGCTCAGTGATGCACCTGCTCAGTGATGCACCTGCTCAGT s danRer1.chrNA 55519341 55 + 390413307 GCTCAGGTGTTCGTCAGCTCAGGTGTTCGTCAGCTCAGGTGTTTGTCAGCTCAGG a score=10068.0 s hg17.chr17_random 975441 34 + 2618010 TGTGCACTGGCTCAGGTGTTCA-------CTGGCTCAGGTG s panTro1.chr19 82469719 34 + 82489036 TGTGTACCGGCTCAGGTGTGCA-------CTGGCTCAGGTG s mm5.chr2 15175161 32 - 181686250 GTCTCTCCAGCTCAGGGCTGCT-------CCAGCTCAGG-- s rn3.chr5 16554523 34 + 173106704 TGAGCACTGGCTAGGGTGATCA-------ATGGCTAGGGTG s canFam1.chrUn 6324941 34 + 91062872 TCTACCTTGCATCAGGTGTACA-------GTGCTTCAGGTG s galGal2.chrUn 121455815 41 + 165033910 TGTGGAGGGGCAGGGATGCTCATGTGCGGGGTGCTCGGGTG s fr1.chrUn 59124040 34 - 349519338 GATGCACCTGCTCAGTGATGCA-------CCTGCTCAGTGA s danRer1.chrNA 55519396 34 + 390413307 TGTTCTTTAATAGAGGTGTTCG-------TCAGCTCAGGTG a score=2530.0 s hg17.chr17_random 975475 7 + 2618010 TGTACCG s panTro1.chr19 82469753 7 + 82489036 TGTACCG s mm5.chr2 15175193 6 - 181686250 -GTCCCA s rn3.chr5 16554557 7 + 173106704 AGCACTG s galGal2.chrUn 121455862 7 + 165033910 TGTGCAG s fr1.chrUn 59124074 7 - 349519338 TGCACCT s danRer1.chrNA 55519430 7 + 390413307 TTTGTCA a score=2260.0 s hg17.chr17_random 975475 12 + 2618010 TGTACCGGCTCA s galGal2.chrUn 121455862 12 + 165033910 TGTGCAGGTGCA s fr1.chrUn 59124078 12 - 349519338 CCTGCCTGCTCA s danRer1.chrNA 55519430 12 + 390413307 TTTGTCAGCTCA a score=5103.0 s hg17.chr17_random 975482 5 + 2618010 GCTCA s panTro1.chr19_random 57470170 5 - 57627672 GCTCA s mm5.chr2 15175199 5 - 181686250 GCACA s rn3.chr5 16554564 5 + 173106704 GCTAG s galGal2.chrUn 121455869 5 + 165033910 GTGCA s fr1.chrUn 59124085 5 - 349519338 GCTCA s danRer1.chrNA 55519437 5 + 390413307 GCTCA a score=-17089.0 s hg17.chr17_random 975487 274 + 2618010 GGTGTGCACTGG----------CTCAGGTGTGTAC-CG--------TGCACTGGCTCAGGCGT----------------TC----ACTGGCTCAGGTGTGTACCGGCTCAGGTGTGCACCGGCTCAGCTGTGCACCGGCTCAGGTGTGCACCGGCTCAGGTGTTCACCG-------GCTCAGGTGTGCACCAGCTCAGGTGTGTACCG-----------------------------------------------------TGCACTGGCTCAGGTGTGCACCAGCTCAGGTGTTCACTGGCTT----AGGTGTGCACC----GGCTCAGATGTGT----ACCAGCTCAGGTGTGC----ACC----GGCTCAGGTGTGTACCGG----CTCAGATG s panTro1.chr19_random 57470175 281 - 57627672 GGTGTGCACTGG----------CTCAGGTGTGTAC-TG--------TGCACTGGCTCAGGTGTGCACCGGCTCAGATGTTC----ACTGGCTCAGGTGTGCGCCGGCTCAGGTGTGTACCGGCTCAGGTGTGCACCAGCTCAGGTGTGCACTGGCTCAGGTGTGTACCGTGCACTGGCTCAGGTGTGCACCGGCTCAGGTGTGTACCG-----------------------------------------------------TGCACTGGCTCAGGTGTGCACCAGCTCAGGTGTTCACTGGCTC----AGGTGTGCACC------------------------AGCTCAGGTGTGC----ACC----GGCTCAGGTGTGTACCGG----CTCAGGTG s mm5.chr2 15175204 260 - 181686250 GGGCTGCTCCAG----------CTCAGG---GTCC-------------CTCCAGCACAGGGCT----------------GC----TCCAGCTCAGGGTCCCTCCAGCACAGGGCTGCTCCAGCTCAGGGTCCCTCCAGCACAGGGCTGCTCCAGCTCAGGGTCCCTCCA-------GCACAGGGCTGCTCCAGCTCAGG---GTCCCT---------------------------------------------------------CCAGCACAGGGCTGCTCCAGCTCAGGGTCCCTCCAGCAC----AGGGCTGCTCC----AGCTCAGGGTCCC----TCCAGCACAGGGCTGC----TCC----AGCTCAGGGTCCCTCCAG----CACAGGGC s rn3.chr5 16554569 228 + 173106704 GGTGAGCACTGG----------CTAGAGTGAG----------------CCCTGGCTAGGGTGA----------------GC----ACTGGCTAGGGTGATCAACGTCTAGGGTGAGCACTGGCTAGGGTGAGCACTGGCTAGGGTGAGCACTGGCTAGGGTGAGCACTG---------------------------------------------------------------------------------------------------GCTAGGGTGAGCACTGGCTAGGGTGAGCACTGGCTA----GGGTGAGCACT----GGCTAGGGTGAGC----AATGGCTAGGGTGAGC----AAT----GGCTAGGGTGAGCAATGG----CTAGGGTG s canFam1.chrUn 6324975 204 + 91062872 GGTGTGGGCTGG----------CTCAGGTAGG----TG--------TGCCCTGGCTCAGGT--------------------------------AGGTGTGTGCTGGCTCACGTGTGCCCTGGCTCAGGTGTGGGCTGGCTCAGGT------------AGGTGTTT--------------------------GGCTCAGGTAGGTGGCC---------------------------------------------------------CTGGCTCAGGT------------AGGTGTGCTCTGGCTCAGGTAGGTGTGCCCT----GGCTCAGGTCTAC----CTTGCATCAGGTGTAC----AGT----GCTTCAGGTGGGTG---------------- s galGal2.chrUn 121455874 244 + 165033910 GGGGTGCTTTGGTGCAGGAGCACTCAGGTGTG----GG------GCTGCTCGGGTGCAGGGGT----------------GT----GCTGATGCAGGGGTGCTTAGGTGCAGGAGCACTCAGGTGTGGGGCTGCTCGGGGGCAGGGGTGTGCTGATGCAGGGGTGCTTAG-------GTGCAGGAG------CGCTCGGGTGTGGGGCT------------------------------------------------------GCTTGGGTGCAGGGGTGTGCAGGTGCAGGGATGCTTAGGTGC----AGGAGTGC------------------------------TCAGGTGTGG----GGC----TGCTCAGGGG--------------CAGGGG s fr1.chrUn 59124090 352 - 349519338 GTGTTGCACCTG----------CTCAGTGATGCACCTGCTCAGTGTTGCACCTGCTCAGTGTT----------------GCCCCTGCCTGCTCAGTGTTGCACCTGCTCAGTGATGCACCTGCTCAATGATGCACCTGCTCAGTGATGCACCTGCTCAATGATGCACCT-------GCTCAGTGATGCACCTGCTCAGTGATGCACCTGCCTGCTCAGTGTTGCACCTGCCTGCTCAGTGATGCACCTGCCTGCTCAGTGATGCACCTGCTCAGTGATGCACCTGCTCAGTGATGCACCTGCTC----AGTGTTGCACCTGCCTGCTCAGTGTTGCAAAAACCTGCTCAGTGATGCAAAAACC----TGCTCAGTGATGCACCTG----CTCAGTGT s danRer1.chrNA 55519442 197 + 390413307 GGTGTTCGTCAG----------CTCAGG--------TG------------------------T----------------TC----TTTAATACAGGTGTTTGTCAGCTCAGGTGTTCGTCAGCTCAGGTGTTCTTTAATACAGGTGTTCATCAGCTCACGTGTTCCTCA-------TAGCAGGT------------------------------------------------------------------------------------GTTCAGGT---------------------CTGACCA-----------CTCC-------TCTGCTGTTT----TTCAGCTCAGTGGAGG----ATCTGCAGGCCTCGGCGTGTGTCAGTCGCTCCAGAGC a score=-8659.0 s hg17.chr17_random 975761 92 + 2618010 TGTGCCGGCTCAGGTGTGCACT----GGCT-CAGGTGTGCACCAGC------------------TCAGATCTGAGCCAGCACAGGTCTGCAGGCTCCCACAGGTCACAACAAGAA s panTro1.chr19_random 57470456 76 - 57627672 TGTACTGGCTCAGGTGTGCACT----GGCT-CAG----------------------------------ATCTGAGCCAGCACAGGTCTGCAGGCTCCCACAGGTCACAACAAGAA s mm5.chr11 121388855 79 + 121648857 TGTGCTAGCTTAGGTGTGTAC------ACT-CCAGTGTTTGCCAGC------------------TCA-GTTTGCACTGGTACAGGTCT----------ACAGGTCACAACAAGAG s rn3.chrUn 69921156 80 - 75822765 TGTACTAGTCTAGGTGTGCACC-----ACT-CTAGTACGTGCCAAC------------------TCA-GTTCACGCTGGCACAGGTCT----------GCAGGTCACAACAAGAA s canFam1.chrUn 6325179 76 + 91062872 TGGGCTGGCTCAGGTGTGCCCT----GGCT-CAGGCGCGT----------------------------------GCTGGCTCAGGTCTGTGGGCTCCTGCAGGTCACAGCAAGAA s galGal2.chrUn 121456118 81 + 165033910 TGTGCTGATGCAGGGGT----------GCT-TAGGTGCAGGAGTGC------------------TTAGGTGTGGGGCTGCTCAGGGGCAGGGGTGTGCACATGT-----GGAGGG s fr1.chrUn 59124446 42 - 349519338 CCTGCCTGCTCAGTGTTGCCCCTACCTGCT-CAGTGTTGCACC------------------------------------------------------------------------ s danRer1.chrNA 55519639 103 + 390413307 TGAGGAGATCTACCGGTGCCTG----CGCTACAGCTGTGACCCCGTGCTGATAAACCATACTAACCAGACCTGAACCA--------CTATAGACTCTAGAAAACCATGACCAGCA a score=497.0 s hg17.chr17_random 975853 42 + 2618010 GCAGG--TGTTT--------------------CTGGGCGAGGAC----CT--GAAGCAGCAGGCTGGGGC s panTro1.chr19_random 57470532 42 - 57627672 GCAGG--TGTTT--------------------CTGGGCGAGGAC----CT--GAAGCAGCAGGCTGGGGC s mm5.chr11 121388934 46 + 121648857 ACAGG--TGCCC--------------------ACGGGTGAGGATGCGAAC--GAAGTAGTAGTCTGTGAA s rn3.chrUn 69921236 42 - 75822765 GCAGG--TGCCC--------------------ACGGGTGAGGAT----GC--GAAACAGTAGTTTGTGAA s canFam1.chrUn 6325255 62 + 91062872 GCAGG--TGCTTCATACCTGCACGGCAAGAAGCAGGGTGATGTC----CT--GAAGCAGCAGGCTGGTGA s galGal2.chrUn 121456199 39 + 165033910 GCAGGGATGCTC--------------------ATGTGCGGGGTG----CTCGGGGGCAGGGGT------- s fr1.chrUn 59124488 26 - 349519338 -------TGCCC-------------------------------C----CT--GTTTCAACTGGTCAGTGA s danRer1.chrNA 55519576 42 + 390413307 TCTGC--TGTTT--------------------TTCAGCTCAGTG----GA--GGATCTGCAGGCCTCGGC a score=-792.0 s hg17.chr17_random 975895 23 + 2618010 -TGGGCCAG--GTCCCACTGTGGCTG s fr1.chrUn 59124514 21 - 349519338 -TGGGCCTG----CTCAGTGATGCAC s danRer1.chrNA 55519618 23 + 390413307 GTGTGTCAGTCGCTCCAGAGCTG--- a score=-2646.0 s hg17.chr17_random 975895 4 + 2618010 -TGGG s panTro1.chr19_random 57470574 4 - 57627672 -TGGG s mm5.chr11 121388980 3 + 121648857 -GGG- s rn3.chrUn 69921278 3 - 75822765 -GGG- s canFam1.chrUn 6325317 4 + 91062872 -TGGG s fr1.chrUn 59124515 3 - 349519338 -GGG- s danRer1.chrNA 55519618 4 + 390413307 GTGT- a score=10991.0 s hg17.chr17_random 975899 19 + 2618010 CCAGGTCCCACTGTGGCTG s panTro1.chr19 82470146 19 + 82489036 CCAGGTCCCACTGTGGCTG s mm5.chr11 121388983 19 + 121648857 CCGGGCCCCACCGTGGCTG s rn3.chrUn 69921281 19 - 75822765 CTGGGCCCCACTGTGGCTG s canFam1.chrUn 6325322 19 + 91062872 ACAGGTCCTACCGCGGCCG s fr1.chrUn 59124518 17 - 349519338 CCTG--CTCAGTGATGCAC s danRer1.chrNA 55519622 19 + 390413307 GTCAGTCGCTCCAGAGCTG a score=2211.0 s hg17.chr17_random 975918 25 + 2618010 GTGGTCAGCACACCTT-TGCCAGCAG s panTro1.chr19 82470165 25 + 82489036 GTGGTCAGCACACCTT-TGCCAGCAG s mm5.chr11 121389002 26 + 121648857 CTGATTAAGATACCTTATGCTAGCAG s rn3.chrUn 69921300 26 - 75822765 GTGATTATGATACCTTATGCTAGCAG s canFam1.chrUn 6325341 16 + 91062872 GGGGATG----------TGCCAGGAG s fr1.chrUn 59124535 10 - 349519338 CTGCTCAGTG---------------- a score=-589.0 s hg17.chr17_random 975918 25 + 2618010 GTGGTCAGCACACCTTTGCCAGCAG s fr1.chrUn 59124535 10 - 349519338 CTGCTCAGTG--------------- a score=-13155.0 s hg17.chr17_random 975943 22 + 2618010 GC----GCCACA-GCACAGGTGCCCAG------- s panTro1.chr19 82470190 22 + 82489036 GC----GCCACA-GCACAGGTGCCCAG------- s mm5.chr11 121389028 23 + 121648857 GACTAGGTCA----CACAGATGCCATG------- s rn3.chrUn 69921326 23 - 75822765 GACTAGGTCA----CACAGAAGCCATG------- s canFam1.chrUn 6325357 8 + 91062872 GA--CGGGCA------------------------ s galGal2.chrUn 121456238 22 + 165033910 -----GTGCAGATGCAGGGGTGCTTAG------- s fr1.chrUn 59124545 21 - 349519338 -------------ATGCACCTGCTCAGTGTTGCG a score=3386.0 s hg17.chr17_random 975965 4 + 2618010 CCCA s panTro1.chr19 82470212 4 + 82489036 CCCA s mm5.chr11 121389051 4 + 121648857 CCCA s rn3.chrUn 69921349 4 - 75822765 CCCA s fr1.chrUn 59124566 4 - 349519338 TCCA a score=451.0 s hg17.chr17_random 975965 6 + 2618010 CCCACA s fr1.chrUn 59124566 6 - 349519338 TCCACA a score=1910.0 s hg17.chr17_random 975969 2 + 2618010 CA s panTro1.chr19 82470216 2 + 82489036 CA s mm5.chr11 121389068 2 + 121648857 CA s canFam1.chrUn 6325365 2 + 91062872 CA s fr1.chrUn 59124570 2 - 349519338 CA a score=-13245.0 s hg17.chr17_random 975971 53 + 2618010 G---------CGG---GGCGGCAGGGAATCTGCTCCTGGAACCTGGGTTTTCTGGG-------CTGGCTCCC s panTro1.chr19 82470218 53 + 82489036 G---------TGG---GGCGGCAGGGAATCTGCTCCTGGAACCTGGGTTTTCTGGG-------CTGGCTCCC s mm5.chr11 121389070 56 + 121648857 GTCCCTCCCCTCA---GCCTGCAGGGAAGCTGC----AGAACT--GGATTGGTGGG-------CTGGCCACC s canFam1.chrUn 6325367 53 + 91062872 G---------CGACTCGGCTGCTGGG---------TTGGTGCTTAGGTTTGCTGGGTGTTGATCTGACTCT- s galGal2.chrUn 121456260 36 + 165033910 ------------------GTGCAGGAGCACT------CGGGTGTGGGGCTGCTCGG-------GTGC----- s fr1.chrUn 59124572 42 - 349519338 --------------GTACCTGT-GGAAGTTTTCTTCCGACACCTCGGCCGTCGGGG-------G-------- a score=2344.0 s hg17.chr17_random 976024 52 + 2618010 GGGGGTGTTGACTG---------------ACAGGAGAAGGCTGCAGAACAAGAAGGTCGGGTTT-------------CAG s panTro1.chr19 82470271 52 + 82489036 GGGGGTGTTGACTG---------------ACAGGAGAAGGCTGCAGAACAAGAAGGTCGGGTTT-------------CAG s canFam1.chrUn 6325420 65 + 91062872 GGAGGCGCTGCGGG---------------GCACGCAGGTCCTGCAGAACCAGAATGTCGGGTTTGGGTTTCGGTTTCAGG s galGal2.chrUn 121456296 51 + 165033910 AGGGGTGTGCAGAT---------------GCAGGGATGCTTAGGTGCAGGAGCAGGT-GGGTGT-------------GGG s fr1.chrUn 59124614 63 - 349519338 GGCGGAGTTGTCTGAGAACACGTCCACCAACAGATTGGCTCCGGGGGAAGA----GCTGGAGTT-------------CAG a score=1314.0 s hg17.chr17_random 976076 30 + 2618010 -------GCTGGCAGCCTCTCCTCAAT---TACAGGGATG s panTro1.chr19 82470323 30 + 82489036 -------GCTGGCAGCCTCTCCTCAAT---TACAGGGATG s canFam1.chrUn 6325485 32 + 91062872 -------GCCGGCATTCTGCCCTAGGTCAGTACAGGGAC- s galGal2.chrUn 121456347 20 + 165033910 -------GCTG----------CTCGGG---TGCAGGGGTG s fr1.chrUn 59124836 30 - 349519338 GCTGCCAGCCGTTAGCCTACGCTAAGT---AGT------- a score=13449.0 s hg17.chr17_random 976106 166 + 2618010 CTGGG-------GTAGGCCAGAACCCGGTGTCAGGT--GGAGTAGAAG-TCACGCTTCACGGGAGGCTTCTGTTTTTTAAGAAGTGCCTGTGGGCTGGGGGGTTTTTGGTCCAGAGTCTAGGGGAAGGCAAAGCTTACCAAACA-----GAAAGTGTCCACTCCGGGGT--GGGGGACTGGGG s panTro1.chr19 82470353 166 + 82489036 CTGGG-------GTAGGCCAGAACCCGGTGTCAGGT--GGAGTAGAAG-TCACGCTTCACGGGAGGCTTCTGTTTTTTAAGAAGTGCCTGTGGGCTGGGGGGTTTTTGGTCCAGAGTCTAGGGGAAGGCAAAGCTTACCAAACA-----GAAAGTGTCCACTCTGGGGT--GGGGGACTGGGG s canFam1.chrUn 6325517 166 + 91062872 CTGGGAGGAGCCGGGGACCTGACCCCTGTGCTGTGTCGTGGGCAGAAGCTTCCATTCCGAGTGAGGCTCAAGCTTTTTACAAAGTGCC-GTGGGC-GCGGGGGAGCTGGCCTAGGGGCCAGGTGGAGGAGGAGCAGGGCCAGCAGGTGCGGAAGCGCCCTCCCCAGGG--------------- s fr1.chrUn 59124866 151 - 349519338 CGGAG-------GTGTACCACAGCCCC-TGCTGAG---GGACTGGTGG----GACTAGATGGGATG-------TTTCTACG----GCCTGGTGGTCGACAGAACGCCTGTCGGGAGTAAAGATGAAAACAGGGGA-ATAAAGGA-----GCAAACGCAGACGCTTGGTTTAGTGGAACTGGTG a score=6094.0 s hg17.chr17_random 976272 61 + 2618010 CCTCGTCTCTTCGCTGGGCCAGGACAGGGCTG----TGAGGTCCAGCTGCCTGCTCAGCTCTGGG s panTro1.chr19 82470519 59 + 82489036 CCTCGTCTCTTCGCTGGGCCAGGACAGGGCTG------AGGTCCAGCTGCCTGCTCAGCTCTGGG s canFam1.chrUn 6325683 61 + 91062872 -CCCCTCTGTTC-CGAGGCT--GGCACTGCTGCAGGTGGGTGCCTGGTGCCGGCACACCCCGGGG a score=1336.0 s hg17.chr17_random 976333 6 + 2618010 ACCTGT s panTro1.chr19 82470578 6 + 82489036 ACCTGC s mm5.chr12 81448957 6 + 115071072 ACATGC s canFam1.chrUn 6325744 6 + 91062872 CCCCGT a score=12018.0 s hg17.chr17_random 976339 81 + 2618010 CCTCCTGCAGGAGCCCACGGCCGTGAACATGCACACGGGCAGATCCACATGTCCCCCGAGGAAAAAGAGAGGGTCAAGGTT s panTro1.chr19 82470584 81 + 82489036 CCTCCTGCAGGAGCCCACGGCCGTGAACATGCACACGGGCAGATCCACATGTCCCCCGAGGAAAAAGAGAGGGTCAAGGTT s mm5.chr12 81448963 79 + 115071072 ACTTGCATGGGAGCACACATGCAGGAACATGCACATGAACACATACACATGCGCAC--AGGAACCAGACGACCTCAGGGTT a score=3516.0 s hg17.chr17_random 976420 38 + 2618010 GAGTGTGTGGGTGCTAGGGGGTGCAGAACTCACTTCTA s panTro1.chr19 82470665 38 + 82489036 GAGTGTGTGGGTGTTAGGGGGTGCAGAACTCACTTCTA a score=10858.0 s hg17.chr17_random 976458 57 + 2618010 ACTATGAGGGTTGAGGCGGGCTTCACAGGGGAGGTGGGTTTTGAGCCAGGCCTGCAG s panTro1.chr19 82470703 57 + 82489036 ACTATGAGGGTTGAGGCGGGCTTCACAGGGGAGGTGGGTTTTGAGCCAGGCCTGCAG s rn3.chr7 83572027 57 - 143082968 ACAGCGAGGGTGCAGCCGGGATTCACCGAGGAGGCAGTTTCCGAGCCAGCCCTCCAG a score=69244.0 s hg17.chr17_random 976515 730 + 2618010 CCCGGCATCTGGAAGTGGCTTACAGGCTCTCCCTGAGCTCTCTCCTGCAGGACACCCCTGCCTGCAGATCTGCACCCCCAGCTCCTTCCTGGGGACTTGATATCATGACCCTGCCTGGCACCCCAGGGGTGAATGCTGCACCCAGCCCTGAGGGTTTCCATCTGCTGGGGGCATCTGACCTGGGCAGGCCAGGGTGGGTGGGAGGGAGTCCAGCGGGGGCAGGTGCAGGGTGGCCAGGGGGAGACACTGCCCTGGCTGGAGCCTGGATTCACTAGGTCATCACCAATGCAGGGGGTCCTGGCTCACTGGACTTTGCTACTAGAGAAGGTTGGGGAGCTCCACATGAAGGCAAGAAGGCTGGGGCTCAGGGTGTAACTCATCCCCGGAGAGCAACCAGAAAGGCCGTCGGATTGCAACGCAGCCTGCATTGTCCTCGCTGAACGCCTGGTCCTGTCCCACCTGCACCGGACAGCAACTGCTTCCCCTCCAGGGCGGCCCCCATCGTCCCCCAGGTGCTGCAAGAGCAGTGAGACTTACCCAAGACAAGTCAGAGGCTTTGGAGCTCTCGGGGGCGGTGGCTTCTCCCAGGAGCCCCGTATCTGTCAGTCCCCCCATAAGGGGAGGGGAGTTGGCAAGGCTCCTCCTTGCTCCCAGCGTGAGGATTGCCCCTACTTTTCCGGCCCCCACTTGCCCCCTCCACCTGCCCTTTTCCCTCCGGGAAGCCCTGGAG s panTro1.chr19 82470760 730 + 82489036 CCCGGCATCTGGAAGTGGCTTCCAGGCTCTCCCTGAGCTCTCTCCTGCAGGACACCCCTGCCTGCAGATCTGCACCCCCAGCTCCTTCCTGGGGACTTGATATCATGACCCTGCCTGGCACCCCAGGGGTGAATGCTGCACCCAGCCCTGAAGGTTTCCATCTGCTGGGGGCATCTGACCTGGGCAGGCCAGGGTGGGTGGGAGGGATCCCAGCGGGGGCAGGTGCAGGGTGGCCAGGGGGAGACACTGCCCTGTCTGGGGCCTGGATTCACTAGGTCATCACCAATGCAGGGGGTCCTGGCTCACTGGACTTTGCTACTAGAGAAGGTTGGGGAGCTCCACATGAAGGCAAGAAGGCTGGGGCTCAGGGTGTAACTCATCCCCGGAGAGCAACCAGAAAGGCCGTCGGATTGCAACGCAGCCTGCATTGTCCTCGCTGAACGCCTGGTCCTGTCCCACCTGCACCGGACAACAACTGCTTCCCCTCCAGGGCGGCCCCCATCGTCCCCCAGGTGCTGCAAGAGCAGTGAGACTTTCCCAAGACAAGTCAGAGGCTTTGGAGCTCTCGGGGGCGGTGGCTTCTCCCAGGAGCCCCGTATCTGTCAGTCCCCCCATAAGGGGAGGGGAGTTGGCAAGGCTCCTCCTTGCTCCCAGCGTGAGGATTGCCCCTACTTTTCCGGCCCCCACTTGCCCCCTCCACCTGCCCTTTTCCCTCCGGGAAGCCCTGGAG a score=41467.0 s hg17.chr17_random 977245 433 + 2618010 GTTTTCCAAGAACTCTGCGGGTCGAGGGGGCAGCCTATGTGGGGTGGCGGGGGGCCTCCTGCTTGTTGGATGCCCAGACGCCTACACCTTTCACCCTGGGGTCCAGTCGGCTGATGGCCATGAGAGAGAAGCTGAGAGCAACCAGAGCCCACAGCTCCATGCTGGTCCCCCATCTGCAAACGCTGGGCCCCATGGGAGCTGTGACTCGGTTTCCAGCTCGTCACAGGGCTGGCCGAGGCCCCGGCATGTCAAGCCATCTCAGGTTGGGCAGGAATGTGGTCCGTGTTCACATGTGTCTCTGTGTGTGTGAGAGAGAGGGGTCAGCTGGGACGCTGGGGTGGCAGGGACAGTCCTGGCTCACCCCTCATCCTCCCTCGACCTCGACTCCCTCCACATGAGGAGCCCCCCCTTCCTGGCTATCCTGTGAGTTGAG s panTro1.chr19_random 605937 433 - 57627672 GTTTTCCAAGAACTCTGCGGGTCGAGGGGGCAGCCTATGTGGGGTGGCGGGGGGCCTCCTGCTTGTTGGATGCCCAGACGCCTACACCTTTCACCCTGGGGTCCAGTCGGCTGATGGCCATGAGAGAGAAGCTGAGAGCAACCAGAGCCCACAGCTCCATGCTGGTCCCCCATCTGCAAACGCTGGGCCCCATGGGAGCTGTGACTCGGTTTCCAGCTCGTCACAGGGCTGGCCGAGGCCCCGGCATGTCAAGCCATCTCAGGTTGGGCAGGAATGTGGTCCGTGTTCACATGTGTCTCTGTGTGTGTGAGAGAGAGGGGTCAGCTGGGACGCTGGGGTGGCAGGGACAGTCCCGGCTCACCCCTCATCTTCCCTCGACCTCGACTCCCTCCACATGAGGAGCCCCCCCTTCCTGGCTATCCCGTGAGTTGAG a score=6367.0 s hg17.chr17_random 977678 38 + 2618010 CTTCCTCTGCTGGGAGGGCTTTGTCAGAGGTTCCCTGC s panTro1.chr19_random 606370 38 - 57627672 CTTCCTCTGCTGGGAGGGCTTTGTCAGAGGTTCCCTGC s mm5.chr11 121392091 36 + 121648857 CTTCTTCAGCTGGGAGGACTTCTGTGGAA--TTCCTGT a score=17847.0 s hg17.chr17_random 977716 74 + 2618010 GGTT---CCAGAAGGAAAGCTGGCTGCAGGGAGGGCCGGGCACTGGACACCGTGTGGCTGAGCCTGTGGCGGGGGCT s panTro1.chr19_random 606408 74 - 57627672 GGTT---CCAGAAGGAAAGTTGGCTGCAGGGAGGGCCGGGCACTGGACACCATGTGGCTGAGCCTGTGGCGGGGGCT s mm5.chr11 121392127 68 + 121648857 GGCTGGGAAAGAAGGAAGACTGGGTTCCGGGAGAGCCTGGCACCGA---------GGCCAAGTGTCCAGCAAGGCCT s canFam1.chrUn 6329045 65 + 91062872 GGTT---CTGGAGGGAAAGCTGGCTGCAGGGAGGGCCTGGCAC-------CACATGGCAGAGCC--CAGCTGGGGCT a score=26073.0 s hg17.chr17_random 977790 212 + 2618010 GCACAGCTGGGTTCCCAGCCCCC----CTCCTTGTCCCCACCCCACCGCACTGGGAGGCCCTGCTGAGGGGCCAGAGTCCGGCTGCAGGTCCCACGG--GTGGGGGTGGG-GCCCCTCATTAGCACTGCAGCTGACACTGAGGGCTTCCACCTCGCTAATTGATTAAACTGTTTAGAAACCAGGCCGGCGTGGTGGGAATTGGCCCCGGCCGGGCTGTC s panTro1.chr19 82472035 212 + 82489036 GCACAGCTGGGTTCCCAGCCCCC----CTCCTTGTCCCCACCCCACCGCACAGGGAGGCCCAGCGGAGGGGCCTTAGTCCGGCTGCAGGTCCCACGG--GTGGGGGTGGG-GCCCCTCATTAGCACTGCAGCTGACACTGAGGGCTTCCACCTCGCTAATTGATTAAACTGTTTAGAAACCAGGCCGGCGTGGTGGGAATTGGCCCCGGCCGGGCCGTC s mm5.chr11 121392195 168 + 121648857 -----GATGGGT--CAGGCTGCCACAGCTCCTGAACCACATTCT------CTAGAAGGACCTGTTTAGGGCTTAGAGAT--GCT-CTGGTCCCACAG--GTAGAGGTGGGAAATCCTCATTAGTGCTATAGCT-ACAATCCAGGCTGCCACTGAGTT--------------------------------GTGGTGGGAACTGATCCCAGACAGCCTGTG s canFam1.chrUn 6329110 170 + 91062872 --GAGGGCGAGT--CTGGCCCTG----GT------------------------GACAGCCCTGGGAAGA------AGACCGG---TGTGTCCCATGGCAGGGGGGGCTGG-GGCCCTCA--GGAACCACAGTTGGCAC--GAGGCATCCACCTCACTAATCGATTACACTGTTCGG--TTCAGGCCTGAGCGGTGAGAACTGG-CCCGGCCAGCCCGTC a score=13609.0 s hg17.chr17_random 978002 180 + 2618010 CGCTCCCCTTC----------TGTGCAGGCAGCGGCCCCCGGAGT-TCATCAGTCAGGCCGGTTGGTGGGGTCCCGGCCCTGGCTGCCCTCGGGAACCCTTCTTTGCTCCTTTGTGCGGTCAAAATGGTGAGGGTCCTGAGAGGAGCTGGTGAGACCCCGGGGTCCTCTCCTCCCTGACCACT--------CACTGGGC------- s panTro1.chr19 82472247 180 + 82489036 CGCTCCCCTTC----------TGTGCAGGCAGCGGCCCCCGGAGT-TCATCAGTCAGGCCGGTTGGTGGGGTCCTGGCCCTGGCTGCCCTCGGGAACCCTTCTTTGCTCCTTTGTGCGGTCAAAATGGTGAGGGTCCTGAGAGGAGCTGGTGAGACCCCGGGGTCCTCTCCTCCCTGACCACT--------CACTGGGC------- s mm5.chr11 121392363 130 + 121648857 CATGTCTTTCTCCAGAGTAAATTTGGGGACAGCATCTCCTAGAGTGTTATTAGTAGG---AGTTAGTGGTATCTAGATCCAGCCTG-------------------------------------------------------------------------GGTGTGCCCACCTCCTTGTCCACCTCAGACCACAATAAGCCTATCAT a score=9173.0 s hg17.chr17_random 978182 315 + 2618010 GAGCATGGAGGGA----GGCCTACT----------GTGCACGGGCATGTTCCTGG-----GAACCTGCCTGCTGGGATTAAACCCGCCCTTGTGAAGGACCGCAGGTGGGTCACTCAATACCAGGAGGG------GCACGGGGCTGTGAGCAGAGG-----CCCGAGAGCCTTCTG---AGGCGGCACCGG--GTGCTCCTGGGCCCTG--CTC--------TCCTGGGATTTGTTGT-----GCCTG--TGACCT----CAG-----------CCTCTTC-----------CTTCCTCTCCTGT---------GGGATTCCCCCAACAC--CCCCTCCCCTCCTGCCATTCCTTCCCCCACCAGGCCCCATGCCTCCCCTCCCCAGTGCC----------CCCTACCCCCAGG s panTro1.chr19 82472427 320 + 82489036 GAGCATGGAGGGA----GGCCTACT----------GTGCACGGGCATGTTCCTGG-----GAACCTGCCTGCTGGGATTAAACCCGCCCTTGTGAAGGACGGCAGGTGGGTCACTCAATACCGGGAGGG------GCACGGGGCTGTGAGCAGAGGCCCGACCCGAGAGCCTTCTG---AGGCGGCACTGG--GTGCTCCTGGGCCCTG--CTC--------TCCTGGGATTTGTTGT-----GCCTG--TGACCT----CAG-----------CCTCTTC-----------CTTCCTCTCCCGT---------GGGATTCCCCCAACAC--CCCCTCCCCTCCTGCCGTTCCTTCCCCCACCAGGCCCCATGCCTCCCCTCCCCAGTGTC----------CCCTACCCCCAGG s mm5.chr11 121392493 247 + 121648857 TATCATGGGTGGAGTATGGCTTACTTCAGATACGGATACACGGGTCTGTT----------------------------------------------GGACTGC--------CATTCTGTGTTTGTAGG---------ATGAGAATATAAAGACAG------TCTGGGAGCTTTCCA---GAGAGAGACTTGACATATCTCTGGGACCTT--TTCAATAAAGGACCAGGCAGCCATTAT------------TGGCCTTTTCCAG-----------TCTTTTTGTCCCAAGTAGTTTTCACTTTTCT---------GGGAAAAGCCCAAGA--------GCCCTCCTTCCAGCCTTTCCACCA----------------------------------------------------- s galGal2.chrUn 19330207 367 - 165033910 GAGCATTGGGGGGGGGGGGGGTCCT---------GGGGCTGGGACGCATTCCTAGCAAACAAACCCACCCCGGGAGCCCAACGCCGCC--TCTGAAGGGCCCCTGA-----AATGCTTTGGATGAAGGGCAGCACCCATAGGCGCTTCACTGCAA------CCCGAGGGATCGTCGCAAGGGCGGCACTGA--GCCCTGCTGCACTCGGGCTGC--------GTCTGAGCCTTGTTGACACCCGCCTGCATCGCTG----CAGTGATCCACGTCCCACATC-----------CCTGCACCCCTCTGACGCAGTCGGGACCTCTCCCATCCTTTCCCCGCACCCCAACCAACCCCATCCCTCTCCTGCTCCAGGCGGCCCCACCGCTATCACCCACCCTTATCCCTTCTCCCAGG a score=33387.0 s hg17.chr17_random 978497 369 + 2618010 TCTTCCCTCTAGGACATCAGCCTGGGCTGTGGGTCTTGGTCTCCCACAGAGA--CTGAGTCCTGGGAGAAGGGCAGAGCCTTGGTTCCCAGTGCAGCCCCTGTGCCAGCCTGCAGTGGGCACCGGTTCAGCCGGTGCACAC-TGGGTCCTGCCCCCAC-CTGAGGAGCGGCCTGGGGCCTGATCA------GCCCTGCTGGTGTCTGGCCTGCAGCCAGCACCGGCTCTGCTATTCACACTTGGTTACAGGTGGGTGCCCATCCCAGCAGCCTCGGAGCAGAGTGGGTCGGGC---TCCGGA-GGTGGGGGCGGCCACTAACAGCAGGAGGTCGTGGCAGTGCGGCTATGGCAGGGGTTCTGAGGGGCGGAAGCCAGGGGCGG s panTro1.chr19 82472747 371 + 82489036 TCTTCCCTCTAGGACATCAGCCTGGGCTGTGGGTCTTGGTCTCCCACTGAGA--CTGAGTCCTGGGAGAAGGGCAGAGCCTTGGTTCCCAGTGCAGCCCCTGTGCCAGCCTGCAGTGGGCGCTGGTTCAGCCGGTGCACAC-TGGGTCCTGCCCCCACGCTGAGGAGCGGCCTGGGGCCTGGTCA------GCCCTGCTGGTGTCTGGCCTGCAGCCAGCACCGGCTCTGCTATTCACACTTGGTTACAGGTGGGTGCCCATCCGAGCAGCCTCGGAGCAGAGTGGGTCGGGC---TCCGGAGGGTGGGGGCGGCCACTAACAGCAGGAGGTCGTGGCAGTGCCGCTATGGCAGGGGTTCTGAGGGGCGGAAGCCAGGGGCGG s mm5.chr11 121392740 292 + 121648857 --TAGCATCTGGAACAGA-------------------GGTCTCCCAAAGAGGTTTTTAGTCCTGAGAGGAATGCAGATCCTTTGTTTCCA---------------CGGTGAGGTATGGAC-CTGGTACA--CAGTGAATGCATAGGTCCCATCCCTT--CTGAGGAGCTGCCAGCTGGCAGCACAATTGAGGCTTTATAGGTG----------AGCCAG-----------------ACAAGTGATAATGGGAGGTTG-----TCAAGTAACCACAGCAGGGATTTGGGGATGCAAATCTGTGGGGAGGATGTAGTCCTCAA-------AGACTGTGGCCCTGTGGTGAGGATGTGGGCTTAGGG-----------AAGATCTG a score=2987.0 s hg17.chr17_random 978866 20 + 2618010 GACGTGGGGA-CGCAGACCTG s panTro1.chr19 82473118 20 + 82489036 GACGTGGGGA-CGCAGACCTG s mm5.chr11 121393032 21 + 121648857 GCTCTGAGGACCACAGTGCTT s canFam1.chrUn 6329728 20 + 91062872 GGTGAGGGGG-GGCAGATCAG a score=106097.0 s hg17.chr17_random 978886 355 + 2618010 CAGGGAGGACGCCGGCTCACCCAGCAGGG------------AGGGGAT----------GGCCGCCCAGGGACCCCCAGCCTGCCCGC---------TCTGCTT--------CC----CCGACCGCCGGGGCAGGGGCCCCACGGG---GGACGCCA--GGGAACGTGAGGAATCCGGAGTCAACACTGGGCCACTGTGTGCTGCCAGCCGGGCGGGCCGTGATTTATAAAAACAGCGGAGGCTTGGCTGGTGTCGGGGCGGTGAGGTCACGGCGGCCGGGGGCTCTGGAATTTCTTCAGAAGAA---TTTTGCTTACCAAGCCACATACTTTTCTAGCCATCAGTTTGATCAGAGGCAAGAT----GAAAAATATGCTAAAAAACAA----AGAAACAAAAATACA--CCCCGGGG s panTro1.chr19 82473138 358 + 82489036 CAGGGAGGACGCCGGCTCACCCAGCAGGG------------AGGGGAT----------GGCCGCCCAGGGACCCCCAGCCTGCCCGC---------TCTGCTT--------CCCCGACCGACCGCCGGTGCAGGGGCCCCACGGG---GGACGCCA--GGGAACGTGAGGAATCCGGAGTCAACACTGGGCCACTGTGTGCTGCCAGCCGGGCGGGCCGTGATTTATAAAAACAGCGGAGGCTTGGCTGGTATCGGGGCGGTGAGGTCACGGCAGCCGGGGGCTCTGGAATTTCTTCAGAAGAA---TTTTGCTTACCAAGCCACATACTTTCCTAGCCATCAGTTTGATCAGGGGCAAGAT----GAAAAATATGCTAAAAAACAA----AGAAACAAAAATACA---CCCGGGG s mm5.chr11 121393053 376 + 121648857 TGGAGGGA----TGGTCCAT---GAGAGG------------AGGTGATTCTGAGGTTGGGCTTTCCAGGGAACACAAGGCTGCTGGAAGCAAGGGGTCAGGGTAGGGGTGGCT----CTGTCCTTCTGTGTGGGAGCAGAGTGAA---GGATGCTG--GAGAACGTGAGGAATCCAGCATCAACAGTAGGCCTTTGTGCACTGCCACCCGGGAAGGCAATGATTTATAAAAACAGCTAAGGGTAGGC-----ATTGGGTGGTAAGGTCACCATGGTC-GGGGCTTTGGAATCTCAATTTCAGAA---TTCTGCTTA-CAAGTCACATACTCTGCT-GTTGTCAGTTTGATCAGAGGCAATATGGG-GAAAAAATGGCTAAAGTCCAAAATTAACAACAAAAATAAAAGCATCCTGA s rn3.chrUn 69925767 342 - 75822765 CAGGGAACACACAGCCTAGACCAGCAAGGCTGCTGGAGGTAAGGGGTT----------GGCGGT--AGGG--------------------------GTTG-----------CC----CTGCACTCCTGTGTGGGAGCAGAGTGAA---GGATGCTG--GAGAACGTGAGGAATCCAGCATTAATAGTAGGGCTTTGTGCACTGCCACCCGGGAAGGCAATGATTTATAAAAACAGCTAAGGGTAGGT-----ATTGGGTGGTAGGGTCACCATGGCC-AGGGCTTTGGAATTTCAATTTTAGAA---ATCTGCTTA-CGAGTCACATACTTTGCA-GTCGTCGGTTTGATCAGAGGCAAGATGGGAAAAAAAATGGCTAAAATCCAAA---ATTAACAAAAAAGCG--TCCCGAGG s canFam1.chrUn 6329748 313 + 91062872 GTGGGGGGGTGAGGGCC------GCAGGG------------GGGGACG----------GGCCGCC--------------------GC---------GCGG-----------CC----C----------TGCGGGAGCCACGTGGGGGTGGGGGCCGTTGGGAACGTGCGGAATTCAGTGTCAACACT-GGCCATTGTGCGCTGCC-CCTGGGCGGGTGGCGATTTACAAAAACAGCCACGGTTCGGCGCATATCCGCGCGGTGAGGTCAC---GGCT-GCGGCTCTGGAATTCCGTCTTCAGAAGCGCTCGGCTCACCAGGCCGCATACCTCCTA-GTCATCAGTTCGATCGTGGGCAAGA-----AGAAAAAATGCTAAAAAAACA----GAGCACAAAA---CA--CCCCCAGG a score=798.0 s hg17.chr17_random 979241 6 + 2618010 GGCTCC- s panTro1.chr19 82473496 6 + 82489036 GGCTCC- s mm5.chr11 121393429 6 + 121648857 GGCTCC- s canFam1.chrUn 6330061 6 + 91062872 -GCTGTG a score=4492.0 s hg17.chr17_random 979247 29 + 2618010 G-GTGAGGG------------------GG--AGGGGCGCT---GCGGGAGGGG s panTro1.chr19 82473502 29 + 82489036 G-GTGAGGG------------------GG--AGGGGCGCT---GTGGGAGGGG s mm5.chr11 121393435 32 + 121648857 ATGTGAGGG------------------GACCATTGGGGCT---GTAGAATGGG s rn3.chrUn 69927219 33 - 75822765 G-GTGAGAA------------------GG-AAGGGGCACTCACATGAGAGGGG s canFam1.chrUn 6330067 47 + 91062872 -TGCGAGGGCCGGGAGGGCATGGCCGAGA--AGGGGGGCT---CCGGCAGGAG a score=-3619.0 s hg17.chr17_random 979276 21 + 2618010 ----------------TGGA--------------------GGGCCCAGGGAAGGGTG---------- s panTro1.chr19 82473531 21 + 82489036 ----------------TGGA--------------------TGGCCCAGGGAAGGGTG---------- s rn3.chrUn 69927252 14 - 75822765 -------------------------------------------TCCTGAGGAGTGTA---------- s canFam1.chrUn 6330141 67 + 91062872 TGGGCCGCGTTGCCCCTGGGCCTCCATCCTCTGTGTCCCTGGGCCCCGGGGGCGGCAGCGGCGGGAG a score=573.0 s hg17.chr17_random 979297 2 + 2618010 AG s panTro1.chr19 82473552 2 + 82489036 AG s canFam1.chrUn 6330208 2 + 91062872 AG a score=-352.0 s hg17.chr17_random 979297 7 + 2618010 -AGGGGCC------------ s canFam1.chrUn 6330208 20 + 91062872 AGGGGGTCTTGGTGGCCCCC a score=-545.0 s hg17.chr17_random 979299 5 + 2618010 -GGGCC------------ s panTro1.chr19 82473554 5 + 82489036 -GGGCC------------ s mm5.chr11 121394609 5 + 121648857 -GGGTA------------ s canFam1.chrUn 6330210 18 + 91062872 GGGGTCTTGGTGGCCCCC a score=3100.0 s hg17.chr17_random 979304 50 + 2618010 GGG-----AGCCACTCT---------GCCCGGCAC-TCTCCGCCCAGAAACAGC------CCAACGCCCCT s panTro1.chr19 82473559 50 + 82489036 GGG-----AGCCACTCT---------GCCCGGCAC-TCTCCGCCCAGAAACAGC------CCAACGCCCCT s mm5.chr11 121394614 59 + 121648857 GGG-----CACTACTCTCTAGTCAGGGCCTTCCCC-TCTGAGAGCTAAGACAGC------CAGAGGCCTCT s rn3.chrUn 69927266 63 - 75822765 GGGTAACACACTACTCCCTCATCAGGGCCCTCCCT-GTTGAGAGCTG-GACTGC------CACAGGCCTCT s canFam1.chrUn 6330228 57 + 91062872 -------AGGCCCCTCC------CAGCCCTGGCACGGATCCGCCCGGCTGCAGCTCAGAGCAAAGGCCCC- a score=34614.0 s hg17.chr17_random 979354 100 + 2618010 TTCTTTCCCCTTTTAGCACTGCTGAGCTGGACTAAAATGCCCAACAAGGAACTTTACTAAAAACTGA--GGCAAGAAAGAAAACACACATGACATAAAAATA s panTro1.chr19_random 57474038 100 - 57627672 TTCTTTCCCCTTTTAGCACTGCTGAGCTGGACTAAAATGCCCAACAAGGAACTTTACTAAAAACTGA--GGCAAGAAAGAAAACACACATGACATAAAAATA s mm5.chr11 121394673 95 + 121648857 -------TTCTTTTGGACCTTCCCAACTGAATTAAAAAGTACCCAAAGCAACTTTACTAAAACCCAAAGGGAAACAAAGAAACTATAGATGACATGAAAGCA s rn3.chrUn 69927329 93 - 75822765 -------TTCTTTTGGACCTTCCCAACTGAATTAAAA-GTCCCCAAGGCAACTTTACTAAAACTCAAA-GGAAACAAAGAAACTATAGATGACATGAAAACA s canFam1.chrUn 6330285 95 + 91062872 TTGCTTCCCCCTTTATCACTGCCGAGC-GCACCAAAATGTCCCCAAAGGAGCTCTCTCAAAAACAGG--GG----ACTGAACACACTGATGGTGTCAACGTA a score=12520.0 s hg17.chr17_random 979454 45 + 2618010 GTCAAGGGCACA-TTCTTGATGGTAGATAACTGGTCTCTGGCCACA s panTro1.chr19_random 57474138 45 - 57627672 GTCAAGGGCACA-TTCTTGATGGGAGATAACTGGTCTCTGGCCGCA s mm5.chr11 121394768 46 + 121648857 GTCAAGGGCACACCCCCTTTTTGTAGGCGGCTAGTGTCAGGCCACT s rn3.chrUn 69927422 42 - 75822765 GTCAAGGGCACA-CCCC---TTGTAGGCAGCTAGTGCCAGGCTACA a score=4316.0 s hg17.chr17_random 979499 73 + 2618010 G--CGGCTGCCAGGTTGGGTGTCGGCCGGCGGGTCTG---CCAGTCCCACTCATAGGCACTG---------------------------CACTTCCCTGGGC--CGG s panTro1.chr19_random 57474183 73 - 57627672 G--CGGCTGCCAGGTTGGGTGTCGGCCAGCGGGTCTG---CCAGTCCCACCCACAGGCACTG---------------------------CACTTCCCTGGGC--CTG s mm5.chr11 121394814 70 + 121648857 GGAAGCCTGCTAAAT--GGTGCTGCC---TGAGCCTGATATCAGGGTCACACACA---ACTA---------------------------TGCTTCTCTGGCC--CTG s galGal2.chr14 18684627 93 - 20603938 G--CAGCCCCCAGCTTGGGAGCTGGG-AGCAGCCCTG---CTCG--------AGAGACACTGGAAAATGTGTTTATCTCAGCCCCCTCCCGCTGCCCTGGGATGCTG a score=-1616.0 s hg17.chr17_random 979572 3 + 2618010 ACA s panTro1.chr19_random 57474256 3 - 57627672 ATG s mm5.chr11 121394884 3 + 121648857 CCA s galGal2.chr14 18684720 1 - 20603938 A-- s fr1.chrUn 37649937 3 - 349519338 ATG a score=827.0 s hg17.chr17_random 979575 20 + 2618010 GGGG-------GTGTGGCGG------------GTCTGT-G s panTro1.chr19_random 57474259 20 - 57627672 GGGG-------GTGTGGCGG------------GTCTGT-G s galGal2.chr14 18684721 39 - 20603938 -GGGCATCACCGCGTGGAGGGGGCTGCATGCTGTCTGCAG s fr1.chrUn 37649940 20 - 349519338 AGAG-------GGGCAGCAG------------AACTAT-G a score=-12045.0 s hg17.chr17_random 979595 58 + 2618010 GGAGGGGGACA-AGGTTGGCAGGACCGTGA-GGGGGGTGGCGGGTCTGTGGGA-----GGGGGAC--- s panTro1.chr19_random 57474279 3 - 57627672 GGA----------------------------------------------------------------- s galGal2.chr14 18684760 65 - 20603938 GGACAGGCACGTAGGGACGCGGGAGCACGGTGGGTGGGGACAGCCCTGTGAAAATCCTGCGGGAT--- s fr1.chrUn 37649960 50 - 349519338 AGA---------GGGGCATCAGAACTATGA-GAGGGGCATCAGAACTATGAGA-----GGGGCAT--- s danRer1.chrNA 327901956 58 - 390413307 GGTGGGGGACA-CGGTCGGTGGTGCAGTGG---------GTGGTACTGTGGATGGTGTGGTGGATGGC a score=3711.0 s hg17.chr17_random 979598 55 + 2618010 GGGGGACA-AGGTTGGCAGGA-CCGTGAGGGGGGTGGCGGGTCTGTGGGA-----GGGGGAC--- s panTro1.chr19_random 57474283 57 - 57627672 GGGGGACA-AGGGTGGCAGGACCCGTGAGGGGGGTGGCGGGTCTGTGGGAG----GGGGGAC--- s galGal2.chr14 18684763 62 - 20603938 CAGGCACGTAGGGACGCGGGAGCACGGTGGGTGGGGACAGCCCTGTGAAAATCCTGCGGGAT--- s fr1.chrUn 37649963 47 - 349519338 ---------GGGGCATCAGAA-CTATGAGAGGGGCATCAGAACTATGAGA-----GGGGCAT--- s danRer1.chrNA 327901959 55 - 390413307 GGGGGACA-CGGTCGGTGGTG-CAGTG--------GGTGGTACTGTGGATGGTGTGGTGGATGGC a score=-11008.0 s hg17.chr17_random 979653 279 + 2618010 AAGGTTG------------GCAGGACCGTGAGGGGGGTGTGG--CGGGTCTGTGGGCGGGGGGACAAGGTTGGCAGGACC-GTGAGGG------GGGTGGCGG--GTCTGTGGGAGGGG-----------GGACAAGGTTGGCAGGACCGTGAGGGGGGTGGT-GGGTCTGTGGGAGGGG-----------GGACAAGGTTGGCAGGACCGTGAGGGGGGTGGCGG----GTCTGTGGGAGGGG------------GACAAGGGTGGCAGGACCGTGAGGG----GGGTGGCGGGTCTGTGGGAG--------GGGGACAAGGTTGGCAGGA-CCGTGAGGGGGGTGGCGGGTC--- s panTro1.chr19_random 57474282 235 - 57627672 ---------------------------------------------------------GGGGGGACAAGGGTGGCAGGACCCGTGAGGG------GGGTGGCGG--GTCTGTGGGAGGGG-----------GGACAAGGGTGGCAGGACCGTGAGGGCGGTGGC-GGGTCTGTGGGAGGGT-----------GGACAAGGGTGGCAGGACCGTGAGGGGGGTGGCGG----GTCTGTGGGGGGGG-----------AAACAAGGGTGGCAGGACCGTGAGGG----GGGTGGCGGGTCTGTGGGAGCGGTTTCAAGGGA-------GGCAGGACCCGTGAGG-----GGCGGGTC--- s rn3.chr17 36633516 256 + 97307196 AGGCCTG------------GGAGGACTGCGGTGAAGGTGTGG--GAGGACTGCAG---------TAAGGGTGTGAGGACT-GAGGGGA------AGGTGTGAG--GACTGAGGG--------------------GAAGGTGTGAGGACTGAGGGGAAGGTGTG-AGGACTGTGG--------------------TGAAGGTGTGAGGACTGAGGGGAAGGTGTGAG----GACTGAGGGGAAGGTGTGAGGACTGAGGGGAAGGTGTGAGGACTGAGGGGA----AGGTGGGAGGACTGAGGGGA--------AGGT--------GTGAGGA-CTGAGGGGAAGGTGGGAGGAC--- s galGal2.chr14 18684825 281 - 20603938 AGGATGGGATTTTCCCAGTGCACGACCCTGGGGGGGCTGCAGAAGAGGGCTCCGGGCTGGGGGTCCTGG------GGGCC-GAGGGGTCATTGCAGGTGTGGG--GACGCTGCAGGGCA-----------TGAGGAGAGCGGTGGCAC----AGCGCGGTGGT---GACAGCGGGGAGAG-----------GAGGTGGATCGGCAGTGT--TGAGGGTGGAAGGGG----GGCTGCAGAGATGG-------------AGAGCCGTGTCCTGGCCCTAAGGGTGACAGGGGACGCGGGTGGAGGAG--------AGAGC-------AGGAGGA-GCGAGGCTGAAGGAGCGAGGC--- s fr1.chrUn 37650022 294 - 349519338 AGGGGCA------------GCAGAACTATGAGAGGGGCAT----CAGAACTATGA---------GAGGGGCATCAGAACT-ATGAGAG------GGGCAGCAG--AACTATGAGAGGGGCATCAGAACTATGAGAGGGGCAGCAGAACTATGAGAGGGGCATC-AGAACTATGAGAGGGGCATCAGAACTATGAGAGGGGCATCAGAACTATGAGAGGGGCAGCAG----AACTATGAGAGGGGCATCAGAACTATGAGAGGGGCAGCAGAACTATGAGAG----GGGCATCAGAACTATGAGAG--------GGGC--------ATCAGAA-CTATGAGAGGGGCAGCAGAAC--- s danRer1.chrNA 327902014 256 - 390413307 AAGGTGG------------GGGGCACTGTGGAGAGTGT------GGTAGTTGTTG---------CAGTG--GGTGGTACT-GTGGATG------GTGTGGTGGATGGCAAGGTGGGGGT-----------TGCAGTGGGTGGAGCAATAGGTGGCACAGTGTTTTTAGCAGTGGGTGG-------------CATACTGTATGGCAGTGTGGTGGGTGGTGCAGTGGCTGCTACTGTGGATGGTG-------------TAATGGATGGCATG---GTGGGAG----ATGCAGTGGGT-----GGAG--------CAATA-------GCTGTCG-CAGTGTTTAGAGCAGTGGGTGGCA a score=5168.0 s hg17.chr17_random 979653 23 + 2618010 AAGGTTG-------------GCAGGACCGTGAGGGG s panTro1.chr19_random 57474340 23 - 57627672 AAGGGTG-------------GCAGGACCGTGAGGGC s rn3.chr17 36633516 23 + 97307196 AGGCCTG-------------GGAGGACTGCGGTGAA s galGal2.chr14 18684825 35 - 20603938 -AGGATGGGATTTTCCCAGTGCACGACCCTGGGGGG s fr1.chrUn 37650022 23 - 349519338 AGGGGCA-------------GCAGAACTATGAGAGG s danRer1.chrNA 327902014 21 - 390413307 AAGGTGG-------------GGGGCACTGTGGAG-- a score=-7129.0 s hg17.chr17_random 979932 48 + 2618010 -----TGTGGGAG--------GGGGACAAGGT---------------TGGCAGGA-CCG------TGAGGGGGGTGGCGGGTC s panTro1.chr19_random 57474472 45 - 57627672 -----TGTGGGAGCGGTTTCAAGGGA----------------------GGCAGGACCCG------TGAGG-----GGCGGGTC s rn3.chr17 36633772 40 + 97307196 -----TGCAGTA---------AGGGT----------------------GTGAGGA-CTG------TGGTGAAGGTGTGAGGAC s galGal2.chr14 18685106 68 - 20603938 -----TGAGGAG---------GGAGCAGAGGTGGCACAGAGGGTCCCCATCAGAA-CCAAAGTGCTGAGCGCGGGAGGGGGAC s fr1.chrUn 37650316 40 - 349519338 -----TATGAGA---------GGGGC----------------------ATCAGAA-CTA------TGAGAGGGGCATCAGAAC s danRer1.chrNA 327902270 45 - 390413307 TGGTGTATGGCA---------GCGTA----------------------GGGGGCG-CTG------TAGGGGGTGTGGTGGGTG a score=1695.0 s hg17.chr17_random 979980 32 + 2618010 TGTGGGAGGG-GGACAAGGTTGGCAGGACCGTG s panTro1.chr19_random 57474374 33 - 57627672 TGTGGGAGGGTGGACAAGGGTGGCAGGACCGTG s rn3.chr17 36633812 33 + 97307196 TGAGGGGAAGGTGTGAGGACTGAGGGGAAGGTG s galGal2.chr14 18685174 25 - 20603938 ---GGGAGGAGGGAGA-----GGTGGGGCTGTG s fr1.chrUn 37650356 24 - 349519338 TATGAGAGGGGCATCA---------GAACTATG s danRer1.chrNA 327902315 32 - 390413307 -GTGCAGTGGGTGCTACCATGGATAGTGTAGTG a score=3930.0 s hg17.chr17_random 980012 14 + 2618010 AGGGGGGTGGCGGG s panTro1.chr19_random 57474407 14 - 57627672 AGGGGGGTGGCGGG s rn3.chr17 36633845 14 + 97307196 TGAGGACTGAGGGG s galGal2.chrUn 88128601 14 - 165033910 GTATGGCTGGAGGG s fr1.chrUn 37650380 14 - 349519338 AGAGGGGCAGCAGA s danRer1.chrNA 327902347 14 - 390413307 GATGCCATGGTGGG a score=-3736.0 s hg17.chr17_random 980026 97 + 2618010 TCTGTGGGAGGGGGGACAAGGGTGGCAGGACCGTGAG--GGGGGTGGCG-GGTCTGTGGGCAGGTGGA----CAAGGGTG----GCAGGACCTGTGAGATGATGTGAG--- s panTro1.chr19 82473844 97 + 82489036 TCTGTGGGCGGGTGGACAAGGGTGGCAGGCCCATGAG--GGGGGTGGCG-GGTCTGTGGGAGGGGGGA----CAAGAGTG----GCAGGACCCGTCAGATGATGTGAG--- s rn3.chr17 36633863 88 + 97307196 TGTGAGGACTGAGGGGAAGGTGTG--AGGACTGAGGG--GAAGGTGGGA-GGACTGTGGTGAAG-----------ATGTG----GGAGGGCTGTGGTGAAGATGTGGG--- s galGal2.chrUn 88128620 81 - 165033910 TGTGGGGCATCGGAGACACGAGTGGGGGCACCGTGTG----------------CCGTGGGAATGGGGG----C---GGTT----TGAGGGTGTGGGATATGGGTGGGG--- s fr1.chrUn 37650396 89 - 349519338 TATGAG-----------AGGGGCATCAGAACTATGAG--AGGGGCATCA-GAACTATGAGAGCATCGAGCTGCACAGGTG----AAACCACCCA-AAGATGATGTCAG--- s danRer1.chrNA 327902365 104 - 390413307 GAAGTGGGTGGGGCAATAACTGTTGCAGTGTTTAGAGCAGTGGGTGGCATGGTGTATGGCAGCGTGGG-------GGGTACTGTAGAAGATGTGGTGGGTGGTGCAGTGGT a score=974.0 s hg17.chr17_random 980123 26 + 2618010 TGCAGCACAGTGGGGCTCTGTAAGAA s panTro1.chr19 82473941 26 + 82489036 TGCAGCACAGTGGGGCTCTGTGAGAA s rn3.chr17 36633951 26 + 97307196 AGGACTGTGGTGAAGGTATGGGAGGA s galGal2.chrUn 88128701 26 - 165033910 GTCAGCAGAGGGGTCCCCCATGGAAG s danRer1.chrNA 327902469 26 - 390413307 TGGAGCAATAGGTGGCACAGTGTTTG a score=505.0 s hg17.chr17_random 980149 7 + 2618010 GCGACCC s panTro1.chr19 82473967 7 + 82489036 GCGACCC s danRer1.chrNA 327902495 7 - 390413307 GAGAAGT a score=-93.0 s hg17.chr17_random 980149 7 + 2618010 GCGACCC s danRer1.chrNA 327902495 7 - 390413307 GAGAAGT a score=5955.0 s hg17.chr17_random 980156 39 + 2618010 GGGCAGCTTGAGCAGGGGCAGGCTGGGCGGTGCCTACGG s panTro1.chr19 82473974 39 + 82489036 GGGCAGCTTGGGCAGGGGCAGGCTGGGCGGTGCCTACGG s galGal2.chrUn 88128727 35 - 165033910 GGGTGGTATGA----GGACCCACTGAGTGNCGCCTGAGG s danRer1.chrNA 327902502 39 - 390413307 GGGTGGCACGGTGTATGGCAGCGTGGGGGGTACTGTGGG a score=897.0 s hg17.chr17_random 980195 7 + 2618010 GTCTCTG s panTro1.chr19 82474013 7 + 82489036 GTCTCTG s danRer1.chrNA 327902541 7 - 390413307 AGCTGTG a score=5271.0 s hg17.chr17_random 980202 56 + 2618010 TCCACCGGAGCCTCTGTTCAGCCCACCTCAGTGTCGCTCCGGATGTGGATAGAAGG s panTro1.chr19 82474020 56 + 82489036 TCCACCGGAGCCTCTGTTCAGCCCACCTCAGTGTCGCTCCAGATGTGGATAGAAGG a score=5946.0 s hg17.chr17_random 980258 55 + 2618010 AGACACTGCCTGGGCCACAGACCAGGTGCTTCCTTCGTCCTGACCACACC-TGCTT---------------------- s panTro1.chr19 82474076 55 + 82489036 AGACACTGTCTGGGCCACAGACCAGGTGCTTCCTTCGTCCTGACCACACC-TGCTT---------------------- s mm5.chr11 121395059 75 + 121648857 AGATGTGGCCTAAGCTATAGA-CAGATGCTTC--TCTTCCTGGCCATACTAAGCCTTAGGCAATAAGGTAAGCAATGG a score=43724.0 s hg17.chr17_random 980313 356 + 2618010 CTGCCCAGGAGACGCTGCAGGGGCTGTGCTCCCCGCCCGGCTACTCTT---GAGTGGTCCCCAGGCTCCTCCTCCTCCCGGTTCCACCTGGAGCT--GTGGGGCTGTGCCGGGGATGCCTCGCTGCAGCTGCAGCTCAGGGAGAACTCACTGCTGGAGCTTCTGCCTCTCCCGTGCCGTGGGGCCGAGCCGAGCTCCACCAGGGTCTGGACTTCTGCACGGG---CAGCTGTGCTTCCCAGGGTC-------------------GTGGAGAGG--GGTCCTTGGTCCCAGccactgtgtgacctcgaccaggacacttgact----ttcctgcccccagAGGGTCTTGTCTGGACCTCCAGAGCCCCCAGCCTTGCTCACTTGGCTCTG s panTro1.chr19 82474131 356 + 82489036 CTGCCCAGGAGACGCTGCAGGGGCTGTGCTCCCCGCCCGGCTACTCTT---GAGTGGTCCCCAGGCTCCTCCTCCTCCTGGTTCCACCTGGAGCC--GTGGGGCTGTGCCGGGGACGCCTCGCTGCAGCTGCCGCTCAGGGAGAACTCACTGCTGGAGCTTCTGCCTCTCCCGTGCCGTGGGGCCGAGCCGAGCTCCACCAGGGTCTGGACTTCTGCACGGG---CAGCTGTGCTTCCCAGGGTC-------------------GTGGAGAGG--GGTCCTTGGTCCCAGTCACTGTGTGACCTCGACCAGGACACTTGACT----TTCCTGCCCCCAGAGGGTCTTGTCTAGACCTCCAGAGCCCCTAGCCTTGCTCACTTGGCTCTG s mm5.chr11 121395134 261 + 121648857 CTGCCTAGGAAACCTCTCAGGGGCCCAATTCCCAGCCTGGCTTCTCCTCCAAAAAGGT--TCAGGCAC---------------------------------AGATTGGTCAGAGAGACCTTG-----GATTCTGCTCTGGCAGGGCTCTATGTAG--GCCTCAGAGTCT-------------------------------ATTGTCTGACCT--TGCACGGGGTCCAGTAGTG---------------------------------------------TCTGGGTCTCAGCTACCATGTGACCTCAGCTA-TATACCTGAGA----CTGCTGTTCC--AAGGATTGTATCAAGACCTCTA-AGCTCTCAGTCTTGCTCTCAAAGCTTTG s rn3.chrUn 69927786 291 - 75822765 CTGCCTAGGAAATCTCTCAGGGGCCCATTTCCCAGCCTGGCTCCTCCT-----------------------------------CCAACAAGGTTTAGGTACAGGTTGGTCAGAGATACCTTA-----------------------------------GGTTCTGCCCAAAGCCTGCACTG-------GCTGGGCTCTATGTAGGCCT------------------CAGTCTCTGTCCCCAGAGTCTATCGTCTGACCTTGCAAGGTGACCAGGCAGTCTCTGAGTCTCTGCTATCATGTGACCTCAGCTATAACATCTGAGACTGCTTGCTGTTCC--AAGGATTGTATCAAGACCTCTA-AGCTCCCAGTCTTGCTCTCAAAGCTTTG a score=9567.0 s hg17.chr17_random 980669 99 + 2618010 CTTCTGGGCAGGGTGCCCTGGCATTGCTGTTGCTGGCACCTGCCGTGCCTTGGAGGGGTCTCCAGTGGGACCTCTGAGCACGGCTCTTCCTGTACTTCT s panTro1.chr19 82474487 99 + 82489036 CTTCTGGGCAGGGTGCCCTGGCATTGCTGTTGCTGGCACCTGCCGTGCCTTGGAGGGGTCTCCAGTGGGACCTCTGAGCACGGCTCTTCCTGTACTTCT a score=17733.0 s hg17.chr17_random 980768 167 + 2618010 CAGAGGTGAGCAGAGGGCATTTGTGGGAGAACTGGAACCTGGGGAGGAAAAACCCCAAGGCTGGCAAAGACTCCCTGCAGTCTGTCCAGTGATCCACTGAGGCTGAGTGGTGGAGGACATGGAGGCCGGCCCGGGACCAGGACATGGAGGCCGGCCAGGGACCTGGG s panTro1.chr19 82474586 167 + 82489036 CAGAGGTGAGCAGAGGGCATTTGTGGGAGAACTGGAACCTGGGGAGGAAAAACCCCAAGGCTGGCAAAGACTCCCTGCAGTCTGTCCAGTGATCCACTGAGGCTGAGTGGTGGAGGACATGGAGGCCGGCCCGGGACCAGGACATGGAGGCCGGCCCGGGACCTGGG s fr1.chrUn 160669485 145 - 349519338 CAGAGAACCGCAGCAGATA-CAGTCAGAGAGCAGAGACCAGGATGATGAGAACC---GGGCTGG---------TCTGGAGCGAGTCCAG-AACCTCCTGA-TCTGAGC-----CGGACCAGGA--TCGGAGCGGGTCCAGAACCTCCTGATCTGAGCCGGACCTGGA a score=6167.0 s hg17.chr17_random 980935 25 + 2618010 GAAGAGAGGGCCTCAGTCTGGTGAG s panTro1.chr19 82474753 25 + 82489036 GAAGAGAGGGCCTCAGTCCGGTGAG s mm5.chr3 6180989 25 - 160575607 GGAGGGATGCCTTCAGTCTGGTGTG s fr1.chrUn 160669630 25 - 349519338 TCGGAGCGGTCCCTCTCCTGGTGAG a score=1156.0 s hg17.chr17_random 980960 159 + 2618010 ACCAGCCTGGTGGG-------TGCCTGGGGAAGAGAGGGCCTCAGTCCGGTGAGACCAGCCTGGTGGGTGCCTGGGGAAGAGAGGGCCTCAGTCCTGTGAGACCAGCCTGGTGGGTGCCTGGGGAAGAGAGGCCCTCAGTCCGGTGAGGAGACCAGCCTGGTGGGT s panTro1.chr19 82474778 64 + 82489036 ACCAGCCTGGTGGG-------TGCCTGGGGAAGAGAGGGCCTCAGTCCTGTGAGACCAGCCTGGTGGGTGC----------------------------------------------------------------------------------------------- s mm5.chr3 6181014 147 - 160575607 ACCATGCTGGGGGAATGTCTTTACTCTGGGGTGACCATGCTGAAGG--GGTGTCACCAATCTGGTGTGACCATGCTGGAGGGATGTCTTCAGTCTGGGGTGACCATGCTGG--------------AGGAATGTCTTCACTC---TGAGGTGGCCATGCTGGGGTGT a score=6322.0 s hg17.chr17_random 981024 40 + 2618010 CTGGGGAAGAGAGGGCCTCAGTCCTGTGAGACCAGCCTGG s panTro1.chr19 82474795 40 + 82489036 CTGGGGAAGAGAGGGCCTCAGTCCTGTGAGACCAGCCTGG s mm5.chr3 6181083 40 - 160575607 ATGCTGGAGGGATGTCTTCAGTCTGGGGTGACCATGCTGG a score=582.0 s hg17.chr17_random 981064 6 + 2618010 TGGGTG s panTro1.chr19 82474835 6 + 82489036 TGGGTG a score=782.0 s hg17.chr17_random 981070 8 + 2618010 CCTGGGGA s panTro1.chr19 82474794 8 + 82489036 CCTGGGGA a score=2674.0 s hg17.chr17_random 981078 23 + 2618010 AGAGAGGCCCTCAGTCCGGTGAG s panTro1.chr19 82474802 23 + 82489036 AGAGAGGGCCTCAGTCCTGTGAG s mm5.chr3 6181123 20 - 160575607 AGGAATGTCTTCACTC---TGAG a score=1395.0 s hg17.chr17_random 981119 17 + 2618010 GCAGGCCACCCTTGCCT s panTro1.chr19 82474842 15 + 82489036 --AGGCCACCCTTGCCT a score=15638.0 s hg17.chr17_random 981136 154 + 2618010 GCTGTCAGGGCCTGCCCTTCTCTCCG--GCCTCCAGCTGCTTTGCCCCAGCGATCAGGCGCCTGAGCTTCCTCCCCCGA--GCCTGAGTCCAGCTGAGCTCCGTG--TGGCTTTCCCGGTGGAGCAGACTCTGTCTGA-TTTCCCGAC-GGCTGGCGCCTCC s panTro1.chr19 82474857 155 + 82489036 GCTGTCAGGGCCTGCCCTTCTCTCCG--GCCTCCAGCTGCTTTGCCCCAGCGATCAGGCGCCTGAGACTCCTCCCCCGA--GCCTGAGTCCAGCTGAGCTCCGTG--TGGTTTTCCCGGTGGAGCAGACTCTGTCTGA-TTTCCCGACAGGCTGGTGCCTCC s danRer1.chrUn 231043917 145 - 367113659 GCCGCCAGAGCCT-CCCGAATGGCCGCCGCCACCGCCTGAGCCTCCCTAATGGCC-GCCGCCTGAG----CTTCCCTGAATGGCTGCCACCGCCTGAGCCTCCTGAATGGCC-----------GCCACCATCGCCTGAGCTTCCTGAATGGCTGCCACCATC a score=112.0 s hg17.chr17_random 981290 84 + 2618010 ACCTG--CTTCCCAAAACCGAGCACCAGGGGTCTGAGAGGTTGCTATGGGAAGGTCGCTTGCTCCAGGGGGCCCTGGAACAGTTGC s danRer1.chrUn 231044062 80 - 367113659 GCCTGAGCTTCCTGAATGGTCGCCACTGTCGCCTGAGC-----TTCTTGAATGGTCGCC-GCTGCCTAAGCTTCCTGAATGGTCGC a score=392.0 s hg17.chr17_random 981513 11 + 2618010 ACTGTGGCACT s canFam1.chr17 62984059 11 - 66886099 ACTGGAGCCCC a score=876.0 s hg17.chr17_random 981524 10 + 2618010 GACCCCATGG s canFam1.chr17 62984070 10 - 66886099 GTCCACCTGG s danRer1.chrUn 231044142 10 - 367113659 AGCCTCATGA a score=-2501.0 s hg17.chr17_random 981534 12 + 2618010 ------GCCATGGTATCG s canFam1.chr17 62984080 11 - 66886099 ------AGCCCCGT-CCA s fr1.chrUn 214257363 12 + 349519338 ------GCCACCTTGTCA s danRer1.chrUn 231044152 16 - 367113659 TCCAGGGCCACTGCAA-- a score=2063.0 s hg17.chr17_random 981546 8 + 2618010 CCTCAGGG s panTro1.chr19 82477089 8 + 82489036 CCTCGGGG s mm5.chr2 179754485 8 + 181686250 CTCCAGGG s canFam1.chr17 62984091 7 - 66886099 -CCTGGAG s fr1.chrUn 214257375 8 + 349519338 CCTCGCCA s danRer1.chrUn 231044168 8 - 367113659 CTCCATGC a score=11247.0 s hg17.chr17_random 981554 177 + 2618010 CCCTGCCCCTCTGGATCTCCGTCTCCTCAGGGCC--CCGCCCCTCTGGATCTCCGTCTCCTCGGCGCCCCGCCCCTCTGGATCTC-----------------GTCTCCTCGGCGCCCCGCCC-CTCTGGATCCCTGTCTCCTCGGGGCCCCACCCCTCTGGATCTCCGTCTCCTCGGCGCCCCGCC-------------------------------------------------------------------------------------------------C-CTCTGGATCT s panTro1.chr19 82477097 174 + 82489036 CCCCTTCCCTCTG-ATCTCCGTCTCCTCGGGGCC--CCGCCCCTCTG-ATCTCCGTCTCCTCGGGGCCCCGCCCCACTGGATCTC----------------CGTCTCCTCGGGGCCCCGCCC-CTCTGGAGCTCCGTCTCCTCGGGGCCCCGCCCCTCTG-ATCTCCGTCTCCTCGGGGCCCCGCC-------------------------------------------------------------------------------------------------C-CTCTG-ATCT s mm5.chr2 179754493 178 + 181686250 TTCTGGCCCTCCAGGGTTCTGGCTCTCCAGGGTT--CTGGCCCTCCAGGGTTCAGGCCCTCCAGGGTTCTCGCCCTCCAGGGTTC----------------TGGCTCTCCAGGGTTCTGGCC-CTCCAGGGTTCTGGCCTTCCAGGGTTCTCACCCTCCAGGGTTCAGGCCCTCCAGGGTTCTCGC-------------------------------------------------------------------------------------------------C-CTCCAGGGTT s rn3.chr11 9261156 178 - 87800381 CCCTGTCCCACTGGTTCCCTGTCCCACTGGTTCC--CTGTCCCACTGGTTCCCTGTCCCACTGGTTCCCTGTCCCACTGGTTCCC----------------TGTCCCACTGGTTCCCTGTCC-CACTGGTTCCCTGTCCCACTGGTTCCCTGTCCCACTGGTTCCCTGTCCCACTGCTTCCCTGTC-------------------------------------------------------------------------------------------------C-CACTGCTTCC s canFam1.chr17 62984098 196 - 66886099 TCTCGTCCACTTGGAGGCCCGTCCACTTGGAGCC--CCGTCCACCTGGAGCCCCGTCCACATGGAGTCCCGTCCACCTGGAGTCCCGTCCACTGGGAGTCCCGTCCACTTGGAGCCCCGTCCACACTGGAGCCCCGTCCACCTGGAGTCCCGTCCACCTGGAGTCCCGTCCACTTGGAGCCCCGTC-------------------------------------------------------------------------------------------------CACACTGGAGCC s fr1.chrUn 214257383 259 + 349519338 CCTTGTCACCTCGCCACCTTGTCACCTCGCCACC--TCGCCACCTCGTAACCTCGCCAACTCGCCACCT--------------------------------CGCCACCTCGTCACCTCGTCA-CCCTGCCACCTCGCCACCTCGTGACCTCACCACCCTGCCACCTCGTCACCTCGCCACCTTGCCACCTCGTTACCTCGCCACCTCGTCACCCTGCCACCTCGTCACCTCGCCACCTTGTCACCTCGCCACTTTGTCACCTCGCCACCTCGTTACCTCGCCAC-CTCGTGACCT s danRer1.chrUn 231044176 164 - 367113659 CCCAGGCCCTCCACAGTTCCATTTCCGGGCAATCCGCTGTCTCATGACAATTCCACGCTCTGTGTTCTCCGCAGCTCCACCCTCC----------------AGGTCCTCCGCAGTTCCACGC----------TCCGTGTTCTCCGCAGCTCCACGCTCCG-------GGTCCTCCGCAGCTCCACG-------------------------------------------------------------------------------------------------C-TACGGGTCCT a score=100.0 s hg17.chr17_random 981731 1 + 2618010 c s danRer1.chrUn 231044340 1 - 367113659 C a score=41111.0 s hg17.chr17_random 981731 181 + 2618010 ccgtctcctcggcgccccgccc-----------------ctctggatcccc-gtctcctcggcgccccgcccctctgatctcc-tctcctcgggg-ccccgccc-ctctgattcca-----------------gtctcctcggcgccccgccc-ctctggatctccgtctcctcggcg-ccccacccctct-----------------gatctcggtctcctcggcgccccacccctc s panTro1.chr19 82477271 181 + 82489036 CCGTCTCCTCGGGGCCCCGCCC-----------------CTCTGGAGCTCC-GTCTCCTCGGGGCCCCGCCCCACTGATCTCCGTCTCCTCGGGG-CCCCGCCC-CTCTGATCTCC-----------------GTCTCCTCGGGGCCCCGCCC-CTCTG-ATCTCCGTCTCCTCGGGG-CCCCGCCCCTCT-----------------GATCTCCGTCTCCTCGGGGCCCCGCCCCTC s mm5.chr2 179754671 185 + 181686250 CTGGCTCTCCAGGGTTCTGGCC-----------------CTCCAGGGTTCTGGCCTTCCAGGGTTCTCGCCCTCCAGGGTTCTGGCCCTCCAGGGTTCTCGCCC-TCCAGGGTTCT-----------------GGCTCTCCAGGGTTCTGGCC-CTCCAGGGTTCTGGCTCTCCAGGGTTCTCGCCCTCCA-----------------GGGTTCAGGCCCTCCAGGGTTCTCGCCCTC s rn3.chr11 9261334 201 - 87800381 CTGTCCCACTGCTTCCCTGTCC-----------------CACTGGATCCCT-GTCCCACTGGTTCCCTGTCCCACTGGTTCCCTGTCCCACTGGATCCCTGTCC-CACTGCTTCCCTGTCCCACTGTTTCCCTGTCCCACTGCTTCCCTGTCC-CACTGGATCCCTGTCCCACTGGAT-CCCTGTCCCACT----------------GGATCCCTGTCCCACTGGTTCCCTGTCCCAC s canFam1.chr17 62984294 219 - 66886099 CCGTCCACCTGGAGCCCCGTCCACCTGGAGGCCCGTCCACACTGGAGCCCC-GTCCACCTGGAGCCCCGTCCACCTGGAGTCCCGTCCACCTGGAGTCCCGTCCACTTGGAGTCCC-----------------GTCCACTTGGAGCCCCGTCCACACTGGAGCCCCGTCCACCTGGAG-CCCCGTCCACCTGGAGTCTCGTCCACTTGGAGGCCCGTCCACTTGGAGCCCCGTCCACC a score=2068.0 s hg17.chr17_random 981912 8 + 2618010 TGGAGTTC s panTro1.chr19 82477452 7 + 82489036 TG-ATCTC s mm5.chr2 179754856 8 + 181686250 CAGGGTTC s rn3.chr11 9261535 8 - 87800381 TGGATCCC s canFam1.chr17 62984513 8 - 66886099 TGGAGCCC s danRer1.chrUn 231044341 8 - 367113659 CGCAGCTC a score=5429.0 s hg17.chr17_random 981920 11 + 2618010 CGTCTCCTCGG s panTro1.chr19 82477459 11 + 82489036 CGTCTCCTCGG s mm5.chr2 179754864 11 + 181686250 TGGCTCTCCAG s rn3.chr11 9261543 11 - 87800381 TGTCCCACTGG s canFam1.chr17 62984521 11 - 66886099 CGTCCACCTGG s fr1.chrUn 214257642 11 + 349519338 CGCCACCTCGT s danRer1.chrUn 231044349 11 - 367113659 CACTTTCCGGG a score=0.0 s hg17.chr17_random 981931 8 + 2618010 GGCCCCGC a score=1881.0 s hg17.chr17_random 981931 4 + 2618010 GGCC s panTro1.chr19 82477470 4 + 82489036 GGCC s mm5.chr2 179754875 4 + 181686250 GGTT s rn3.chr11 9261554 4 - 87800381 ATCC s canFam1.chr17 62984532 4 - 66886099 AGCC s fr1.chrUn 214257653 4 + 349519338 AACC a score=1684.0 s hg17.chr17_random 981935 4 + 2618010 --------CCGC s panTro1.chr19 82477474 4 + 82489036 --------CCGC s mm5.chr2 179754879 4 + 181686250 --------CTGG s rn3.chr11 9261558 4 - 87800381 --------CTGT s canFam1.chr17 62984536 4 - 66886099 --------CCGT s galGal2.chrUn 19334894 4 - 165033910 --------CCAC s fr1.chrUn 214257657 12 + 349519338 TCGCCAACTCGC a score=17817.0 s hg17.chr17_random 981939 74 + 2618010 CCCTCTGGATCTC-GTCTCCTCGGCGCCCCGCCCCTCTG-----------------ATCTCGGTCT-CCTCGGCGCCCCGCCCC--TCTGGATCC s panTro1.chr19 82477478 75 + 82489036 CCCACTGGATCTCCGTCTCCTCGGGGCCCCGCCCCTCTG----------------GAGCTCCGTCT-AATCGGGGCCCCGCCCC--TCTG-ATCT s mm5.chr2 179754883 76 + 181686250 CCCTCCAGGGTTCTGGCCTTCCAGGGTTCTGGCCCTCCA----------------GGGTTCTGGCC-CTCCAGGGTTCTGGCCC--TCCAGGGTT s rn3.chr11 9261562 76 - 87800381 CCCACTGGATCCCTGTCCCACTGGATGCCTGTCCCACTG----------------GATTCCTGTCC-CACTGGATCCCTGTCCC--ACTGGTTCC s canFam1.chr17 62984540 77 - 66886099 CCACCTGGAGTCCCGTCCACTTGGAGTCCCGTCCACTTG----------------GAGCCCCGTCCACACTGGAGCCCCGTCCA--CCTGGAGCC s galGal2.chrUn 19334898 78 - 165033910 ACCTCCAAAGCCCCCACCCATTGAAGCCCTGCCCCTCCT----------------TAACCCCCACC-CCTTTAAGCCCCACCCCCTTCTAAAGCC s fr1.chrUn 214257669 92 + 349519338 CACCTCGCCACCTCGTCACCTCGTCACCCTGCCACCTCGCCACCTCGTGACCTCACCACCCTGCCA-CCTCGTCACCTCGCCAC--CTTGCCACC s danRer1.chrUn 231044360 75 - 367113659 TCCTCCGCAGCTCCACTCTCCGGGTCCTCCGCAGCTCCA-----------------CGCTCCGTAT-CCTCCGCAGCTCCACGC--TCCGGGTCC a score=27824.0 s hg17.chr17_random 982013 66 + 2618010 CCGTCTCCTCGGCGCCCCGCCCCTCTGGATCTCCGTCTCCTCGGGGCCCCGCCCCT---CTGGATCTCC s panTro1.chr19 82477553 64 + 82489036 CCGTCTCCTCGGGGCCCCGCCCCTCTG-ATCTCCGTCTCCTCGGGGCCCCGCCCCT---CTG-ATCTCC s mm5.chr2 179754959 66 + 181686250 CTGGCTCTCCAGGGTTCTGGCCCTCCAGGGTTCAGGCCCTCCAGGGTTCTCGCCCT---CCAGGGTTCT s rn3.chr11 9261638 66 - 87800381 CTGTCCCACTGGTTCCCTGTCCCACTGGATCCCTGTCCCACTGGATCCCTGTCCCA---CTGGTTCCCT s canFam1.chr17 62984617 66 - 66886099 CCGTCCACTTGGAGGCCCGTCCACTTGGAGCCCCGTCCACCTGGAGCCCCGTCCAC---CTGGAGTCCC s galGal2.chrUn 19334976 69 - 165033910 CCACCCCCTTTAAGCTCCGCCCCTCTGAAGCACCGCCCCCTTTAAGCCCCTCCCCTTTCCTTAAGCCCC s fr1.chrUn 214257992 66 + 349519338 TCGTTACCTCGCCACCTCGTCACCCTGCCACCTCGTTACCTCGCCACCTCGCCACC---CTGCCACCTC s danRer1.chrUn 231044435 59 - 367113659 -------TCCGCAGCTCCACTCTTCGGGTCCTCCGCAGCTCCACTTTCCGGGTCCT---CCGCAGTTCC a score=9383.0 s hg17.chr17_random 982079 33 + 2618010 GTCTCCTCGGG----GCTCCGCCCCTCTGATCTCCTG s panTro1.chr19 82477617 33 + 82489036 GTCTCCTCGGG----GCCCCGCCCCTCTGATCTCCTG s mm5.chr2 179755025 33 + 181686250 GGCTCTCCAGG----GTTCTGGCCCTCCAGGGTTCTG s rn3.chr11 9261704 33 - 87800381 GTCCCGCTGGT----TCCCTGTCCCGCTGGTTCCCTG s canFam1.chrUn 6332155 33 + 91062872 GTCTCCTCGGG----GCTGTGCCCTCAGGGGCTCCTT s galGal2.chrUn 19335045 25 - 165033910 GCCTCCCAAGGCACTGCATTGACCC------------ s fr1.chrUn 214258058 33 + 349519338 GCCACCTCGTC----ACCCTGCCCCCTCGCCACCTTG s danRer1.chrUn 231044494 33 - 367113659 -ACGCTCCGGG---TCCTCCGCAGCTCCACTCTCCGG a score=2332.0 s hg17.chr17_random 982112 20 + 2618010 CACGCACCC-GGCCTCGCCTG s panTro1.chr19 82477650 20 + 82489036 CACGCACCC-GGCCTCGCCTG s canFam1.chrUn 6332188 21 + 91062872 CGCCCACCCTGGCCTCTCCCA s galGal2.chrUn 19335070 20 - 165033910 CAGAACCAC-AACCACACCTC s fr1.chrUn 214258091 17 + 349519338 ---CCACCT-CGTCCCACCAG s danRer1.chrUn 231044527 20 - 367113659 GTCCTCCGC-AGCTCCACTTT a score=2129.0 s hg17.chr17_random 982132 7 + 2618010 AAAAGCC s panTro1.chr19 82477670 7 + 82489036 AAAAGCC s canFam1.chrUn 6332209 7 + 91062872 GAGGACC s galGal2.chrUn 19335090 7 - 165033910 CAAAGCC s danRer1.chrUn 231044547 7 - 367113659 ACGGGTC a score=153.0 s hg17.chr17_random 982132 9 + 2618010 AAAAGCCCC s danRer1.chrUn 231044547 9 - 367113659 ACGGGTCCT a score=-742.0 s hg17.chr17_random 982139 2 + 2618010 CC- s panTro1.chr19 82477677 2 + 82489036 CC- s canFam1.chrUn 6332216 2 + 91062872 TC- s danRer1.chrUn 231044554 2 - 367113659 -CT a score=334.0 s hg17.chr17_random 982141 37 + 2618010 ACGTACAGCAA--AGCGGCCGTGTCTTGGTGGCCTCTGC s panTro1.chr19 82477679 37 + 82489036 ACGTACAGTAA--AGCGGCCGTGTCTTGGTGGCCTCTGC s canFam1.chrUn 6332218 37 + 91062872 AAGTGCAGCCAGCAGGGCCCACGCCT--GAGCCTGGTGC s fr1.chrUn 214258108 37 + 349519338 TCATGAGGCCA--GACGGACCCGTTTGAAGAGCCGGTAC s danRer1.chrUn 231044556 28 - 367113659 --------CCG--CAGTTCCACGCTCT-GTGTTCTCCGC a score=0.0 s hg17.chr17_random 982178 6 + 2618010 CTGGGG a score=780.0 s hg17.chr17_random 982178 2 + 2618010 CT s panTro1.chr19 82477716 2 + 82489036 CT s canFam1.chrUn 6332255 2 + 91062872 CC s fr1.chrUn 214258145 2 + 349519338 CT a score=972.0 s hg17.chr17_random 982180 4 + 2618010 GGGG s panTro1.chr19 82477718 4 + 82489036 GGGA s canFam1.chrUn 6332257 4 + 91062872 GGGG s fr1.chrUn 129402928 4 - 349519338 TAGG a score=-504.0 s hg17.chr17_random 982184 39 + 2618010 CGCTATGGGTGGCCT--GT----CTATG---CCTCAGTTTC----CCCATTC s panTro1.chr19 82477722 39 + 82489036 CGCTATGGGTGGCCT--GT----CTATG---CCTCAGTTTC----CCCATTC s canFam1.chrUn 6332261 36 + 91062872 A-----GGGCGGGCTCCGG----CTGTG---CCTCAGTCTC----CCCATCC s fr1.chrUn 129402932 47 - 349519338 TCCCACTGTCCTCTT--GTCCCACTCTA---CTCTAGTCCCACTTCCCACTC s danRer1.chrUn 231044584 27 - 367113659 ---------------------AGCTCCGGGTCCTCCGCAGC----TCCACTC a score=-699.0 s hg17.chr17_random 982223 14 + 2618010 TTGATGAGAGGGAG s danRer1.chrUn 231044611 1 - 367113659 T------------- a score=1146.0 s hg17.chr17_random 982223 12 + 2618010 TTGATGAGAGGG s panTro1.chr19 82477761 12 + 82489036 TTGATGAGAGGG a score=0.0 s hg17.chr17_random 982223 12 + 2618010 TTGATGAGAGGG a score=246.0 s hg17.chr17_random 982235 2 + 2618010 AG s panTro1.chr19 82477773 2 + 82489036 AG s canFam1.chr17 62984786 2 - 66886099 AC s fr1.chrUn 129402979 2 - 349519338 AC a score=5322.0 s hg17.chr17_random 982237 86 + 2618010 CTGGGGTC------GCTACTGGTC----ACTCGG-------GCCCCAGGCAGACCAAGGCTCACTTCTGTCCACT--------CCCTGGCCCCATTC-CCAGGAATCCCACC s panTro1.chr19 82477775 86 + 82489036 CTGGGGTC------GCTACTGGTC----ACTCGG-------GCCCCAGGCAGACCAAGGCTCACTTCTGTCCACT--------CCCTGGCCCCCTTC-CCTGGAATCCCACC s canFam1.chr17 62984788 78 - 66886099 CTGGAGCC----------CCGTCC----ACCTGGA------GTCCCATCCACACTGGAGC-----CCCGTCCAC---------CTGGAGCCCCGTCCACCTGGAGTCCCATC s fr1.chrUn 129402981 108 - 349519338 CTTAGGTCCCACTGTCCTCTAGTC----ACCCTGCCCTCTTGTCCCACTCACCTTAGGTCCCACTGTCCTCTAGTCCCACTGCCCTTTGTCCCACTCACCTTAGGTCCCACT s danRer1.chrUn 231044612 86 - 367113659 CCGGGTCC------TCCGCAGCTCCACTCTCCGG-------GTCCTCCGCAGCTC----CACGCTCCTGGCCCG---------CCTCAGTTCCAGGACCCAGGTATGCCCCA a score=8250.0 s hg17.chr17_random 982323 102 + 2618010 GGTTCCTGGCCGGGGTCTGGAATCTGTTCTCCCAGTC----CAGGACCTACCCTCCCCTCCACTTCCTGCCT--GCAAGCTCTGTGGTCCTTCCTTGTCTTGAGTCCA s panTro1.chr19 82477861 102 + 82489036 GGTTCCTGGCCGGGGTCTGGAATCTGTTCTCCCAGTC----CAGGACCTACCCTCCCCTCCACTTCCTGCCT--GCAAGCTCTGTGGTCCTTCCTTGCCTTGATTCCA s fr1.chrUn 129403089 100 - 349519338 GTCCTCTAGTC----CCACTGCCCTTTTGTCCCACTCACCTTAGGTCCCACTGTCCTCTTGTCCCACTCTCC--TCTAGTCCCAC--TTCCCACTCACCTTAGGTCCC s danRer1.chrUn 231044698 88 - 367113659 GCTGCATGGTCCTGGCCCTCCATCCCTCCCCCTGTTC----CG--------CCTCCGCTCCACCTCCCACCTAAACAGAATTTGGAGT--------GTCTGGAATCCA a score=3640.0 s hg17.chr17_random 982425 36 + 2618010 GGGTTCCCTGTGCTCCCAGTCCAGCCTCCCTACTCA s panTro1.chr19 82477963 36 + 82489036 GGGGTCCCTGTGCTCCCAGTCCAGCCTCCCTACTCA s fr1.chrUn 129403189 36 - 349519338 ACTGTCCTCTAGTCACCCGCCCTCTTGTCCCACTCA a score=37581.0 s hg17.chr17_random 982461 409 + 2618010 GGGCCGAGGGCACCAGGAGGATGGTCGTTGCAAAAGAATATGGGAggccgggtgcggcggctcacgcctgtaatcccagtacttctgggaggccaaggggggcggatgacttgaggccgtgcaacacctgccagcaccagcatTTGACACGGAATCGAAGAAAACAGGCAGGACATACCCTGACTACACTAGTACAAGTCATCGGCGTCTCGGGGTCCTGGGTTTTAGAAATCACACTGTCAGGGAGGGCTGATGGGGTCCTGGGTTGGAGGCTGGAAGTGGAGGAATCGAGGCATAGGCAGAAACTTGAAGGAAGGGTCAGCCGAGCTGGCCAGAAGGGGGCTCCTCGCCACGGTCCCCAGGGAAGCACTTTGCTCATGGGCCCCGGCCCTGAGAGAGGAGCTCCTGC s panTro1.chr19 82477999 408 + 82489036 GGGCCGAGGGCACCGGGAGGATGGTCGTTGCAAAAGAATATGGGAGgccgggtgcg-cggctcacgcctgtaatcccagtacttttgggaggccgaggggggcggatgacttgaggccgtgcaacacctgccagcaccagcatTTGACACGGAATCGAAGAAAACAGGCAGGACATACCCTGACTACACTAGTACAAGTCATCGGCGTCTCGGGGTCCTGGGTTTTAGAAATCACGCTGCCAGGGAGGGCTGATGGGGTCCTCGGTTGGAGGCTGGAAGTGGAGGAATCGAGACATAGGCAGAAACTTGAAGGAAGGGTCAGCCGAGCTGGCCAGAAGGGGCCTCCTCGCCACGGTCCCCAGGGAAGCACTTTGCTCATGGGCCCTGGCCCTGAGAGAGGAGCTCCTGC a score=20479.0 s hg17.chr17_random 982870 165 + 2618010 CTCTTCCCACTCGGAGAGGGCTGACAGGAGAGGCTTGGCCTGGTGTTTCCTGATGAGATAGCGGGCACGTTCCGG----GAAGCGGTGAGCAGGCCCAGCAGACATCAGATGTGGTGCTTCCTGTCTCCTGTGAATGCGCCTGGCCCTTGAGGGGGGTCTGGGATGGAG s panTro1.chr19 82478407 165 + 82489036 CTCTTCCCACTCGGAGAGGGCTGACAGGAGAGGCTTGGCCTGGTGTTTCCTGATGAGATAGTGGGCACGTTCCGG----GAAGCGGTGAGCAGGCCCAGCAGACATCAGATGTGGTGCTTCCTGTCTTTTGTGAATGCGCCTGGCCCTTGAGGGGGGTCTGGGATGGAG s mm5.chr11 121396839 143 + 121648857 CTCTTCCCACTTGGTTAGGGCCAAGAACAAGAGTCC--CTTAAGGTTTCC---TAAGACAG-----GCATTCTGGATGTGGAGCAGTG------------AGATATCAGATGGTACACTTCCTG--TTCTATGAACATGCTAGTCCC--AAGGGAGCTGTAAGGTCGAA a score=16514.0 s hg17.chr17_random 983035 116 + 2618010 AGTCGGGGGAGGGGAACCCCACTCGCCCTTCTCCTTGTTGTTCTTGGCAGCTGGACTTGGGCAAT-TGTGCCTCCACCCTCTG----GAGGGGCCTCCCCCTGTG---CTGGCTGCAGATCAGA s panTro1.chr19 82478572 116 + 82489036 ATTCGGGGGAGGGGAACCCCACTCGCCCTTCTCCTTGTTGTTCTTGGCAGCTGGACTTGGGCAAT-TCTGCCTCCACCCTCTG----GAGGGGCCTCCCCCTGTG---CTGGCTGCAGATCAGA s mm5.chr11 121396982 108 + 121648857 AACTAGGATGTGAG------------CCTCCTCTTCATTGAGTCTGGTAGCTAACACTGTCCAAC-CACATCTCTGCCCTCTGTGATGGAGGTGCTCTTTATGTG---CTTGCTACAGCCCTAA s canFam1.chrUn 6332715 109 + 91062872 AGCCGGGAAGGGGG------GCTCGCCGTCCACCT-GCGTCTCTCAGTGACTGGAC----ACAACACCTGCCCCTGCCCTCCG----GGGGGGCCTCCGCGTGCGTGCCCTGGTCCAGGTAGGG a score=-4165.0 s hg17.chr17_random 983151 163 + 2618010 GGGGCGATGGGGAGGGATCCACCGGTCCAGGCGGGGGCTCACCTTC-------------------------CAGACCCGGGCGTGGGCG-----------------------AGAGGGGTGCATGGG---AGGACGCCC----------GATGCC------TCAGGGCCCCCGGTCAGCAG----CGAGGCACAGA---------------CTCTCC----TCTGGGCGGTG-----ATGGCCCTGCACGAGGTCCGT s panTro1.chr19 82478688 163 + 82489036 GGGGCGATGCGGAGGGATCCACCGGTCCAGGCGGGAGCGCGCCTTC-------------------------CAGGCCCGGGCGTGGGTG-----------------------AGAGGGGTGCGTGGG---AGGACGCGC----------GATGCC------TCAGGGCCCCCGGTCAGCAG----CGAGGCACAGA---------------CTCTCC----TCTGGGCGGTG-----ACGGCCCTGCACGAGGTCTGT s mm5.chr11 121397090 229 + 121648857 GAGGTAGCATG------TGCACTGATACAAG-AAGGGCACACCCCCAAAATACCCCAAAATGCAGGCTCTAAAGACCCGGGCTAGGCAGACTCAGAAGGTCCAGGTAAATCTACAAGGCTGTATGAA---AGGAGGGGCTGTTCCTTAGGCTGCC------TCAGGCCCAGTGGTCAGTGG----GAAAGCAAGGAGCTCCAATACTTATGCTCTAA----TCTGATGGGTG-----AAGGCCTAATACAAGGATCAC s canFam1.chrUn 6332824 180 + 91062872 CGGACTCTGGCATGGG-------GGTGCAGGAAATGGGGGACCC---------------------------CAGATGTGGGGGTGGAGG------------------AGACTCGAGGGGGGCACAGGCCTGGGGGGCAC---------AGGAGCCAGACAACCAGGACCCCAGAT--GCTGTGCCCAAGGCACCGG---------------CTCCTCCCTACCTGAGCAGCATGTCTGAGGCCCAGCCCCAGGCACTT s danRer1.chrNA 275807735 160 - 390413307 GGGGGGGAGGCGTGGGAAGCCCCTATCCAGGCGGGGGATCA-----------------AGAGGAGGAACAAGGGACGCAGGCATGTGAG----------------------------GGTACACAC----AGGACACAC---------TCCTGCCAG----CTGGGGTCCCCACCAGACAG---CCAGGACAACAG-------------------------GCAGGACG--------ACAGCCTGAGGCCAGGGCTGA a score=10902.0 s hg17.chr17_random 983314 175 + 2618010 ---GTGCCGTCTGCCTGCACAGGGAGAGGAAAGGATCAC-GCGACCATGGGTACGTT-------GGCCACC--TGAAGGTTGAG--TCCCGCAGCCT--AGAGACTGGA-GCGTGGGGAC--------------------------------CAGGAGGAGCTTCTTA-------GCGGAACTGGGCTG-GGGCTCATG-------CAGCCCTCCAGGAGCCCCCGACGCGA--CGCCCTGG s panTro1.chr19 82478851 175 + 82489036 ---GTGCCGTCTGCCTGCACAGGGAGAGGAAAGGATCAC-GCCACCGTGGGTACGTT-------GGCCACC--TGAAGGTTGAG--TCCCGCAGCCT--AGAGACTGGA-GCGTGGGGAC--------------------------------CAGGAGGAGCTTCTTA-------GCGGAACTGGGCTG-GGGCTCATG-------CAGCCCTCCAGGAGCCCCAGACGCGA--CGCCCTGG s mm5.chr11 121397321 206 + 121648857 ---GGACCCTCTGCAT-------GAAAGAACTGGGCCAC-ACAGTCCTGGGAAAGAT-------GATGACTGAGGAGGGAGGAG--TTCCTCAGCCTTAAGGATCTTCC-TCCTGGTGACGATGTTCTCTCTGCTCCACTCTGTCATGAATTCAGCATGCATGCATCA-------GTAGTTTGAGGCTG-GGGCTTTGG-------CGGTTGCCCTGGTTCTCCTCTCACGAACCACCTTGA s danRer1.chrNA 275807895 198 - 390413307 GCTGGGGAAGCAGCAGTGGGTGTTAGAGGGAAGGGCTGCTGCGGCAAAGGGATCAGTGTCTGGGGGCGGCC--TGGGTGAGGAAATCTCTTCAGCTG-GAGACACTGGAGGTTTGGAGAC--------------------------------TAGGAGTCACCCCGCAGGCAGGGGCGGTTCCGGGCTGAGGGCTATTGGAAGGGACGGGTCCACAGAA-------ATGTGA--GGACCTGG a score=0.0 s hg17.chr17_random 983489 7 + 2618010 CTCATCC a score=300.0 s hg17.chr17_random 983489 1 + 2618010 C s panTro1.chr19 82479026 1 + 82489036 C s mm5.chr11 121397527 1 + 121648857 C a score=573.0 s hg17.chr17_random 983490 6 + 2618010 TCATCC s panTro1.chr19 82479027 6 + 82489036 TCATCC a score=-220.0 s hg17.chr17_random 983496 3 + 2618010 CGG- s panTro1.chr19 82479033 3 + 82489036 CGG- s danRer1.chrNA 275808093 3 - 390413307 -GGG a score=637.0 s hg17.chr17_random 983499 44 + 2618010 GTGAAGAG--GCTGCTGAGTCTGAACTGATGACAGTGGACGGGTGG s danRer1.chrNA 275808096 46 - 390413307 GCGGTGAGGAGCTGTGGAAAGCAGAGTGAAGAGGAAGGATGGATGG a score=1799.0 s hg17.chr17_random 983542 245 + 2618010 GCCGCCGGTTCCCAACGCATGGTTGGGCCTGGAACCCAGGTGACTCTGGGAGATGTGGTCACAGTCACAGCCGTCTGTGGGCCTTTGGGTTCAAAACAGCGCGAGTCACAGGAGACAGAAGGGAATCTGAGCTTGCGATTGCTCATTCTTGTCACCCTCCTGGCTCTGGGACACCTCTGCCATCTCCTACCAAGGGTACCCCATTCCTGGCGAGTTGGAAAGTGGCCTCATGGG-CAGA---AAACGAG s mm5.chr11 121397564 203 + 121648857 ACCCCAGAATCTGAATGCCTGAGGAGAAGCTAGATTCAGGAGACT--GAAAGATG-AGTCTCAGGTCAAGCCCTCTGTGGGACAT---------------GTGAGTCACA-----CAG------------------GGTGGTCCATTCCTTTCTCTCTCTTAGCTCTCCCACACC-CTGTATCCTCTTTCC--TGATGTCCCTTTTCTGATGGG--GTAATGTAACCTCATGGAACAAATTGAATTGAG a score=2724.0 s hg17.chr17_random 983787 29 + 2618010 GGCAAAGGGAGCTGCGTGCTGTGAGAGAC s mm5.chr11 121397767 29 + 121648857 GTTAAAGAGAGCAGAGTGTTGTGAGAACT s galGal2.chr14 18686396 29 - 20603938 GACGGGGGGAGCAACGAGGGATGAGAGGC a score=-6124.0 s hg17.chr17_random 983816 93 + 2618010 GTCCCCGCACCCACCCTCCCCACCAGCTCCCTTGGGCC-TTTCCTCC----CTC-CCAGCCCCAC-CCACAGCC-------------------GGGTGGCTCCCTTCACTGTCTCT---CCT s mm5.chr11 121397796 85 + 121648857 GTCATTGTGCACACTCT--------------TGTGATC-TCTGTTCAAATGCTC-TCAGCCTCA--CCACCCCA-------------------GGGTTCCCCTGTGCCCTACTCTTAAGCTT s galGal2.chr14 18686425 106 - 20603938 ACCGGGGCTCCAACGCTCCCCACG-------CATGGCCACCTGCTCA-----GC-CCAGCACCACGCCACGACCCCCAGCACCCTGTGTGTGGGAATGGCTTCGTTCATCACCCTC---CCT s fr1.chrUn 154173078 96 - 349519338 GCCTCGACCCCCACCCCACCGACGGCCCCCCTCCCTCC-CTCCCTCC----CACACCACCTTCA--CCTCGCCG-------------------CGTCTTTTCTTCTCTTTGTCTCTCAATTT a score=-2008.0 s hg17.chr17_random 983909 49 + 2618010 GGGTTTAACTCAGAGGCT----GGCG-AGCAGGGGCTGAC-----CAGTGTGTGTC-GGA s mm5.chr11 121397881 56 + 121648857 GGATTTATTTTTAAGCTT----GCAGCAGTAGGTGTAAGCGCCTTTGGTGTATGCCAGGA s fr1.chrUn 154173174 53 - 349519338 TCGTCCCACTCACCGGCTCCCCGTCG-TCAAGGTGCTCAC-----ACATATAAGTC-AGA a score=1709.0 s hg17.chr17_random 983958 70 + 2618010 GACTCTCCGAGTGGCCAGCACGGGCAGGGAGCTCATAGGCTTGGCCCTGAGACCAGGTCCTGTCTGAGAA s mm5.chr11 121397937 49 + 121648857 GCCTCTCTGAGCAGCCAGTGCTGG---------------------CTTGATACCAGGCCATATTTGAGAA a score=2045.0 s hg17.chr17_random 984049 36 + 2618010 AGAAGGACCCCCACCCCTCCTGCCTGGGACCCTGCC s mm5.chr6 100027578 36 - 149721531 AGAATGAACCACACCCCTCTTACGTGGGGCCCTTCC a score=8932.0 s hg17.chr17_random 984842 929 + 2618010 gcagtgtaaactgtgagatgtgatttttcatttggtaagtgcaaattttagttcattcatgaaac-cagttttgaagatctttaaaatagaatttagtcgaccttaagaattgttaattgtttacaactaaagaccaaaaatccaagagaataaagcgttgcaccagtggtaggggtttgtagttgcctaaattgtaccttt--tacag-atgtttcattttattaaaactCACTAGTCACTGGATC-TTCTATTCAACATGGTGATGGGATGAAATTATGTATGACaactgtgctccctgaaaagacatgtttgcgtctg-atcccctggggtctgt-gaatgtggccgtatttggaaacagggtctctgtagacataatcaagttaggatgacatcatgaggac-----aggccctaatccagtatgactggtgtctttccgagaagaaaacagagacacagagggcgagacccacgtgaaggcagaggcagagattgcagcactgtggccaaaggccaggagtgtccaaaccaccagaagctgaaagaggcaggg---cagggtcc--cccgagagtggtcgtggggagctccctcaggcagatacctcgcggtcctgcaactcctcgatcgcagac-tctgggctccagagctgtgagacagttcaattctgttgttttaagccaccttgtttgtggtcatttgtgccagcagccccaggaCGGTCACACGTGCACCATTCACTGCTGTA---TTGGG------TTAGACCCTTGCACTGAGGGCTTTGGGAACCTGACTGGGTTGGCTGCTGGACAGGGGACTGTGAGGGCTGCGGGGGGTGTCGGCGCAGG-AGTGGAAGGTGCCCCTGCTGGGATGGGGGTCCCTCTGTCCCCTTCTCCTTCTGGAGAGAGGGCCCTCATGG--GGCTGCCCAGGACACAGAGCTACTTGTA s mm5.chr11 121401428 822 + 121648857 GCAGTGACAACTCAGGCAT---AGTTTACCTTTGATGAGTATAA-TTTTAGTCTGTATATGAAATACTGATTTGCAAATATTTCAAACCAAAAGCATT--ATTTTTA-AAGTGTTAATTGTTCTTAGACTAAGAACAAAA--TGAAGAAAATATAGCCTTGC-TCAGTGGCAGAA-TTTGTAGT-ATATAAGCTGTATCTCCCCTGCAATGTCTTTTGTTTTACCAATGTTCCCTAAGCAGGGGCTGGCTCTCGTTACCATTGCTACGGGATGG--TGATGCAC----ACAGTG----------------ATATGCATCTGTATCCTATATAGTATGGAGGAGGTGACTCTGTTTGCACACTGGTTCTTCGCAGA-ATGATAAAGTTA--------CCAAGTGGACCTCTAGGACCCT------------TTGGTG-ATATCTGAGAGGAAAAGGCAGACACAG---GAATAACCCATGAGGATGAAGAT----AGGTGACAGAACAG----------------GTAGCTATGGAAGCAGCAGCTGCAGCTGTTAGGGAAGCAGGGTTCTTCCCCAGAGTGTCAATGA--------------CAGATCCCT----GTC----AGCTCCTTGATT-CGGACATGTTGTCTCCAGTATTCTGAGACCTTGTGCTTCTGCTGTCTTGGGCTACCCCACTTGTAGCTGCCTGGAACAGTGACCCTCAGACCCTCATAGGGTCA------ACTGCTGCAGGTTTGGAGACTTCTCAGAGGCTTGGGCTAGGGACTTCAAGAACCC-ACT-----------------------TGTAAAGGTTACAGGAGGTGTTAGCATGGGAAGAGAGAAATGTTCCTTCTGGGA-GAGGTCTTCTCAGTCCGTTTCTCCT----GAAGTGAGCCTCTCTTGGCATGTGGCCCAGGGTGAAAGGCTTTTTGTA a score=-538.0 s hg17.chr17_random 985899 164 + 2618010 GAGCTTGGGATGCGGCTCATCCCCAGCCTGAGTCTTCTTCCTTCACTGTCACCTGTTGCCCCTCTGGGAGCTGCCGTTGAGAATG--------AGGAACGTTCCAGGTGGTCTGTGCCAGCAACACCACTGCAGGCTCGGGGGCGGGGGGAGACGGGCACGGAGTGTCAC-AC s fr1.chrUn 117096646 149 + 349519338 GAGATTAATGTGCAGCTCAGCCATGGCCAGA--------------CTGTCAGCAGGGGAACAGCGGAGA-----TGTTGGGAATGCTGAGGCAGGGAAGGGTCCCTGT--TCAGATGCTGGAGGGGAACAGCGGAGATGTTGGGATGCTGAGGCAGG---GGAGGGTCCCTGT a score=2231.0 s hg17.chr17_random 986063 11 + 2618010 ACAGGTGCTGG s fr1.chrUn 117096795 11 + 349519338 TCAGATGCTGG s danRer1.chrNA 275808556 11 - 390413307 ACAGATGCTGA a score=1208.0 s hg17.chr17_random 986074 7 + 2618010 ACAGGAA s mm5.chr11 52383734 7 + 121648857 ACAGAGG s fr1.chrUn 117096806 5 + 349519338 --AGGGG s danRer1.chrNA 275808567 7 - 390413307 GAAGAGA a score=-957.0 s hg17.chr17_random 986081 6 + 2618010 GTGGGC-- s mm5.chr11 52383741 6 + 121648857 TTGGGG-- s danRer1.chrNA 275808574 6 - 390413307 --AAGACC a score=144.0 s hg17.chr17_random 986081 13 + 2618010 GTGGGCTGAGGGC s danRer1.chrNA 275808574 13 - 390413307 AAGACCTGATGGA a score=285.0 s hg17.chr17_random 986087 7 + 2618010 TGAGGGC s mm5.chr11 52383747 7 + 121648857 GGAGACA s canFam1.chrUn 6333004 7 + 91062872 TGGGGAC s danRer1.chrNA 275808580 7 - 390413307 TGATGGA a score=-4701.0 s hg17.chr17_random 986094 59 + 2618010 CAGCGCAGGAGGTGGGGGGC-----------AGACAGGGAGGGGGCGTTGCCCAGGTGCTGGACGGGAAA------ s mm5.chr11 52383754 59 + 121648857 GAGTACAGAGGATGGGGGGG-----------AGACAGTGCAGAGGTTGGGGGGAGACAGAGTACAGAGGA------ s canFam1.chrUn 6333011 57 + 91062872 CAGCGCAGGACATGCCGGAC-----------AGGGCGGGAGCAGGC--TGACCACCAGCCCACCGGAGGG------ s fr1.chrUn 117096813 61 + 349519338 CAGTGGAGATGTTGGGATGCT---------GAGGCAGGGGAGGGTCCCTGTTCAGATGCTGGAGGGGAAC------ s danRer1.chrNA 275808587 73 - 390413307 ---CGGAGGGACTTGAGGCCTCCAAGGAGCTAGACAGAAAGGGAGCTATGACCACCTCCATTTTGCAGACAAGTAA a score=0.0 s hg17.chr17_random 986153 2 + 2618010 TG a score=573.0 s hg17.chr17_random 986153 2 + 2618010 TG s mm5.chr11 52383813 2 + 121648857 TG s canFam1.chrUn 6333068 2 + 91062872 TG a score=0.0 s hg17.chr17_random 986153 2 + 2618010 TG a score=1200.0 s hg17.chr17_random 986155 2 + 2618010 GG s mm5.chr11 52383815 2 + 121648857 GG s canFam1.chrUn 6333070 2 + 91062872 GG s danRer1.chrNA 275808660 2 - 390413307 GG a score=-18.0 s hg17.chr17_random 986155 11 + 2618010 GGCTGAGGGCA s danRer1.chrNA 275808660 10 - 390413307 GGCTCAGAGA- a score=-886.0 s hg17.chr17_random 986157 9 + 2618010 --CTGAGGGCA s mm5.chr11 52383817 9 + 121648857 --GGGAGACAG s danRer1.chrNA 275808662 8 - 390413307 CTCAGAGA--- a score=-662.0 s hg17.chr17_random 986166 19 + 2618010 AGTGCAGGAGGT------GGGGGGC s mm5.chr11 52383826 18 + 121648857 AGTGCAGAGGAT------GGGGGA- s fr1.chrUn 117096874 19 + 349519338 AGTGGAGATGTT------GGGATGC s danRer1.chrNA 275808670 23 - 390413307 GGTTAAGAAACTTTGCCAAGGAC-- a score=-3414.0 s hg17.chr17_random 986185 181 + 2618010 AGACGGGG-AGGGGGCATTGCACAGGTGCTGGACGG----------GAAATGGG----------CTGAGGGCAAGCGCAGGAGGTGGGGGGC--AGACGGGGAGGGGGTGTTGCACAGGTGCTGGACGGGAAATGGGCTGAGGGCAAGTGCAGGAGGTGGGGTGCAGACG--GGGAGGGGGCGTTGCACGGGTGCTGGACAGGAAG s mm5.chr11 52383844 170 + 121648857 AGACAGAGTACAGAGGATGGGGGAGACAGAGTGCAG----------AGGATGGG----------GGGAGACAGAGTGCAGAGGATGGGGGG---AGACAGA-----------GTACAGAGGATGGGGGGAGACAGAGTACAGAGGATGGAGGGGAGACAGAGTGCAGAGG--ATGGGGGGGCAGAGTACAGAGGATGGGGAGGGGG s fr1.chrUn 117097135 159 + 349519338 AGGCAGGG-AAGGGTCCCTGTTCAGATGCTGGA---------------------------------GGGGAACAGCGGAGATGTTGGGATGCTGAGGCAGGGAAGGGTCCCTGTTCAGATGCTGGAGGGGAAC-------------AGTGGAGATGTTGGGATGCTGAGGCAGGGAAGGGTCCCTGTTCAGATGCTGGAGGGGAAC s danRer1.chrNA 275808693 194 - 390413307 ACCTAGCG-GCAGGGTGGGGCTTAAACCTAAGTCTGTCTGTCTCCAAAACTGGGGCTTTCCCCAGTTGGGAAGGGTAGGGGAGAGGGAGTGCA-AGGCTCAGAG--------ATACACCAAAGGGGAAGGCACAGGAGGGAGGGCAGATGCAGGCACTGTAGTTGGGGCA--GAGTGGAGGTGTGGGGACGGGGCGGCAGAAGAGG a score=-238.0 s hg17.chr17_random 986366 24 + 2618010 TGG-----GCTGAGGGCAAGTGCAGGGGG s fr1.chrUn 117097296 25 + 349519338 TGGA----GATGTTGGGATGCTGAGGCAG s danRer1.chrNA 275808887 29 - 390413307 TGGGACCCATCAAGGAGGAGGGCAGGGAG a score=-497.0 s hg17.chr17_random 986390 23 + 2618010 TGGAGTGGCCACTGGAC--CTGGCT s fr1.chrUn 117097321 24 + 349519338 GGGAG-GGTCCCTGTTCAGATGCTG a score=11070.0 s hg17.chr17_random 986413 420 + 2618010 -----GACCAGAGCAGAGAAG-GTCTATGAAGAGAGATGGGAGAG-------GAAGATGCAGAAGGATTTAAAAATAGGGCT-TTGTAATTTTCAAACA-----------GCATACAGTATGCTATGAAAGAAAGGTTAGAAAAATTTTTTAAAGTT----------------AGCTAAAATC---CCATCACC--TGGAGATAAACACAGATGACATTTTAAAGTTGCA---CCCGAGTTAAACAGTGGCTCTGAGCATC---CTCAGA---AGATGAGGCACTCTCTAGTTTTCTGAGTG---------GGGAGTTTAGTGACGAAGCTGTTGCTTCGGGA----GGAGGACGAGGGCAGTGTGGGCACTGGTGGGCGTAGGGGGG-----------ACGGGGCTCTGGGTGAGGACAAGCAGAGGGAGGC----TCACAGTGCCACAGGCAGGTCCCAGCCTCTGCCTTC-----AGGAC----------AGACCAGACCCCTCAGCCTCT-GAAC- s mm5.chr11 121402523 432 + 121648857 -----GGCCAGTGCAAAGAAGCGTCTACAAGGAGAAAGGCCAGAA-------ATGGATGCTGGAGAAATTTTAAATTGGGGT-TTGTAATATTCAAGCA----------CATTTAAAGCCTACTAAGAAAGAAAACTTTAGA---------GACGTT----------------AAATAGTATCAATCCATTACCATCCCAGTCAAATACTGGTGGTGTTCTAAGATCCCACTCCCCCAGCTGGATAACAGCTCTAAGCAACCCACTCATT---TTGGGGGGCATGCTTTGTTTGTTTGTGTGCT----TCATTACATTTTGTGACAAAGCTGGTGCTTTGGAA----GGA----GAGGACA----GGCCACTGAAGAAGCCAGGGGAGAGAATATGGTCACAGAGTGTAGGATGAAGAAAGGTACA-AGAGGC----TGGCACTAATGCAGGAAGGCCCTGCCTTCTGCAAGCT-GAGAGAAC----------AA---AGACTCTTTACCGTTG-GAAC- s rn3.chrUn 69933463 397 - 75822765 -----GGCCAGTGAAGAGAAGCATCTACAAGGAGAAAGGCCAGAA-------ATGGGTGCTGGAGATTTTTAAAATTGGGGT-TTGTAATATTTAAACA----------CATTTAAAGCATGCCAAGAAAGGAAACTTTAGA---------GAAGTT----------------AAATAGTAATAATTCATTCCCATCCCAGATAAACACTGGTGGTGTTCTAAGATCCCACT-CCCCAGCTGGATAACAGCTCTAAGCAACCCAGTCA-----------------------TGTTTTGGGCA----------GAAATTTTGTGATGAAGCTGATATTTTGGAA----GGA----GAAGACA----GTCCATCGAAGGAGCTAGGGGAG--------GTCACAGAGTGTAGAGTGAAGAAATGTACA-AGAGAC----TGGCACCAATGCAGGAAGGCCATGCCTTCTGCAAGCT-GAGAGAAC----------AA---AGACCCTTTACCTTCT-TAAC- s fr1.chrUn 117097345 462 + 349519338 GAGGGGAACAGTG--GAGATGTTGGGATGCTGAGGCAGGGGAGGGTCCCTGTTCAGATGCTGGAGGGG--AACAGCGGAGATGTTGGGATGCTGAGGCAGGGGAGGGTCCCTGTTCAG-ATGCT--GGAGGGGAACAGTGGA---------GATGTTGGGATGCTGAGGCAGGGGAGGGTCCCTGTTCAGATGC--TGGAGGGGAACAGCGGAGATGTTGGGATG--------CTGAGGCAGGGGAGGGTCCCTG---------TTCAGATGCTGGAGGGGAACAGCGGAGATGTTGGGATGCTGAGGCAGGGGAGGGTCCCTGTTCAGATGCTGGAGGGGAACAGTGGA----GATGTTG----GGATGCTGAGG----CAGGGGAG-------GGTCCCTGTTCAGATGCTGGAGGGGAACAGT-GGAGATGTTGGGATGCTGAGGCAGGGGAGGGTCCCTGTTCAGATGCTGGACAGAACCGGGGACAAAAG---GGGCGCTCCTCCATCGCTGACA a score=-926.0 s hg17.chr17_random 986833 11 + 2618010 TGTGTTCGGGC s mm5.chr11 121402955 3 + 121648857 C--------AC s fr1.chrUn 117097807 11 + 349519338 TCTGGTGAGGC a score=1267.0 s hg17.chr17_random 986844 54 + 2618010 AAACGGGATTACGACTCTGAGTGACTGGAAGGCCCCGCTTGGTGCTGAGTGCAC s mm5.chr11 121402958 47 + 121648857 CAAT-------CAACACTGAGTACCAGGAGCACCCCTCTTGATGTTGGTTGTAC a score=91.0 s hg17.chr17_random 986961 1 + 2618010 T s danRer1.chrNA 194402817 1 + 390413307 T a score=573.0 s hg17.chr17_random 986962 2 + 2618010 CA s canFam1.chr34 30573533 2 - 45232793 CA s danRer1.chrNA 194402818 2 + 390413307 CA a score=-125.0 s hg17.chr17_random 986964 1 + 2618010 C s danRer1.chrNA 194402820 1 + 390413307 G a score=300.0 s hg17.chr17_random 986964 1 + 2618010 C s panTro1.chr19_random 211612 1 + 57627672 C s canFam1.chr34 30573535 1 - 45232793 C a score=323.0 s hg17.chr17_random 986965 12 + 2618010 TGCACCATCATT s panTro1.chr19_random 211613 12 + 57627672 TGCACGATCCTT s canFam1.chr34 30573536 12 - 45232793 AGCACAGACATC s fr1.chrUn 138193421 12 - 349519338 TGGACGTTCTCA s danRer1.chrNA 194402821 12 + 390413307 TTTGTAATCGCT a score=9314.0 s hg17.chr17_random 986977 22 + 2618010 CCTCGCTGCACGATCCTTCCTC s panTro1.chr19_random 211625 22 + 57627672 CCTCACTGCAGGATCCTTCCTC s rn3.chr4 133982516 22 + 187371129 CCTCCATGTCTGACCCCTCCTC s canFam1.chr34 30573548 22 - 45232793 CCTCACTGCACAGACCACCCAC s fr1.chrUn 138193433 22 - 349519338 TCTGGATGGACGTTCTCCCCTG s danRer1.chrNA 194402833 22 + 390413307 CCTCAGTTTGTGATCGCTCCTC a score=106241.0 s hg17.chr17_random 986999 397 + 2618010 GCTGCACGATCCTTCCTCGCTGCAGGATCCTTCCTCGC-----------------------------------------------------TGCACGATCATTCCTGGTTGCACGATCCTTCCTCGCTGCACGATCCTTCCTCGCTGCATGATGATTCCTTGCTGCACGATCCTTCCTCACTGCACGATCCTTCCTCGCTGCACGATCAGTCCTCGCTGCAGGATCAGTCCTCACTGCACGATCCTTCCTCGCTGCATGATCCTTCCTCACTGCATGATGATTCCTTGCTGCACGATCCTTCCTCACAGCACGATCCTTCCTCGCTGCACCATCCTTCCTCGCTGCACGATCCTTCCTCGCTGCACGATCCTTCCTCGCTGCACGATCCTTCCTCGCTGCACGATCCTTCCTCGCTGCATGATCCT--TCCTTGCTGCACAATCATTCCTCG s panTro1.chr19_random 211611 361 + 57627672 GCTGCACGATCCTTCCTCACTGCAGGATCCTTCCTCGC-----------------------------------------------------TGCATGATCCTTCCTCACTGCAGGATCCTTCCTCGCTGCATGATCAGTCCTCGCTGCATGATGATTCCTTGCTGCACGATCCTTCCTCACTGCACGATCCTTCCTCGCTGCACGATCCTTCCTCGCTGCACGATCCTTCCTCACTGCATGATCCTTCCTCGCTGCATGATCAGTCCTCGCTGCATGATGATTCCTTGCTGCACGATCCTTCCTCAC------------------------------------TGCAGGATCCTTCCTCGCTGCATGATCCTTCCTCACTGCAGGATCCTTCCTTGCTGCATGATCAGTCCTCGCTGCACGATCCT--TCCTCGCTGCACGATCATTCCTCA s mm5.chr1 155098761 399 + 195203927 GCTGCACACACAGCCCTCCCTGCACACACAGCCCTCCC-----------------------------------------------------TGCACACACAGCCCTCCCTGCACACACAGCCCTCCCTGCACACACAGCCCTCTCTGCACACACAGCCCTCTCTGCACACACAGCCCTCACTGCACACACAGCCCTCCCTGCACACACAGCCCTCACTGCACACACAACCCTCACTGCACACACAACCCTCCCTGCACACACAGCCCTCCCTGCACACACAGCCCTCACTGCACACACAGCCCTCTCTGCACACACAGCCCTCTCTGCACACACAGCCCTCACTGCACACACAGCCCTCACTGCACACACAGCCCTCACTGCATACACAGCTCTCATTGCACACACAGCCCTCACTGCACATACACAACCCTCACTGCACACACAGCCCTCC s rn3.chr4 133982538 397 + 187371129 CATGCCTGACCCCTCCTCCATGTCTGACCCCTCCTCCA-----------------------------------------------------TGCCTGACCCCTCCTCCATGCTCGACCCTTCCTCTATGCCCGACCCCTCCTCCATGCCTGACCCCTCCTCCATGCCTGACTCCACCTCCATGCCTGACCCCTCCTCCATGCCTGACTCCACCTCCATGTCTGACCCCTCCTCCATGCCTGACCCCTCCTCCATGCCTGACCCTTCCTCCATGCCTGACCCCTCCTCCATGCCCGACCCTTCCTCTATGCCCGACCCCTCCTCCATGCCTGACCCCTCCTCCATGCCTGACTCCACCTCCATGCCTGACCCCTCCTCCATGCCTGACTCCACCTCCATGTCTGACCCCTCCTCCTTGCCTGACCCC--TCCTCCATGCCCAACCCCTCCTCC s canFam1.chr34 30573570 448 - 45232793 ACTGCACAGACCACCCACACAGCACAGACCACCCTCACTGCACAGACCATTCACATTGCACAGTCTGTCCACACAGGACAGATGCCCTCAGTGCACAGACCACCCTCACTGCACAAACCTCCCTCACTGCACAGACCACCTACACTGCCAGACG--CCCTCACTGCACAGACCACCCTCACTGCACAGACCACCCACACAGCACAGAACACCCTCACTGCACAGACCACCCACACAGCACAGAACACCCTCACTGCACATACCACCCTCACTGCACAAACCATCCTCACTGCACAGACCACCCACACAGCACAGAACACCCTCACTGCACAGACCACCCACACTGCACAGACCGCCCACAAAGCACAGACCACCCTCACTGCACAGACTACCCTCACTGCACAGACCGCCCACACTGCACAGACCA--CCCACACAGCACAGACCACCCTCA s fr1.chrUn 138193455 396 - 349519338 GATGGACGTTCTCCCCTGGATGGACGTTCTCCCCT-GC-----------------------------------------------------TGGACGTTCTTCCCTGGCTGGCCGTTCTCATCTGGCTGGACGTTCTCCCCTGGCTGGATGTTCTCCCCTGGCTGGACGTTCTCATCTGGCTGGACGTTCTTCCCTGGCTGGACGTTGTCCCCTGGCTTAACGTTCTACCCTGGCTGGACGTTCTTCCCTGGCTGGACGTTCTTCCCTGGCTGGACGTTCTTCCCTGGCTGGACGTTCTCCCCTGGCTGCACGTTCTCCCCTGGATGGACGTTCTCCCCTGGCTGGACGTTCTCCCCTGGATGGACGTTCTCCCCTGGATGGACGTTCTCCCCTGGATGGACGTTCTCCCCTGGCTGGACGTTCTC--CCCTGGATGGACGTTCTCCCCTGG s danRer1.chrNA 194402855 397 + 390413307 AGTTTGTGATCGCTCCTCAGTTTGTGATCGCTCCTCAG-----------------------------------------------------TTTGTGATCGCTCCACAGTTTGTGAACGCTCCTCAGTTTGTGATTGCTCCTCAGTTTGTGATTGCTCCTCAGTTTGTGATCGCTCCTCAGTTTGTGATCGCTTCTCAGTTTGTGATCGCTCCCTAGTTTGTGATCGCTCCTCAGTTTGTGATCGCTCCTCAGTTTGTGATCGCTTCTCAGTTTGTTTTCACTCCTCAGTTTGTGATCGCTCCCTAGTTTGTGATCGCTTCTCAGTTTGTGATCGCTGCTCAGTTTGTGATTGCTCCTCAGTTTGTGATCGCTCCTCAGTTTGTGATCGCTCCTCAGTTTGTGATCGCTCCTCAGTTTGTGATCGC--TTCTCAGTTTGTGATCGCTCCTCA a score=9894.0 s hg17.chr17_random 987253 36 + 2618010 AGCACGATCCTTCCTCGCTGCACCATCCTTCCTCGC s panTro1.chr19_random 211901 36 + 57627672 TGCAGGATCCTTCCTTGCTGCATGATCAGTCCTCGC s mm5.chr1 155099015 36 + 195203927 TGCACACACAGCCCTCTCTGCACACACAGCCCTCAC s rn3.chr4 133982792 36 + 187371129 TGCCCGACCCCTCCTCCATGCCTGACCCCTCCTCCA s canFam1.chr34 30573875 36 - 45232793 AGCACAGAACACCCTCACTGCACAGACCACCCACAC s fr1.chrUn 138193708 36 - 349519338 TGCACGTTCTCCCCTGGATGGACGTTCTCCCCTGGC s danRer1.chrNA 194403109 36 + 390413307 TTTGTGATCGCTTCTCAGTTTGTGATCGCTGCTCAG a score=3243.0 s hg17.chr17_random 987396 3 + 2618010 CTg s panTro1.chr19_random 211972 3 + 57627672 CTg s mm5.chr11 121403030 3 + 121648857 CTA s rn3.chr4 133982938 3 + 187371129 CCG s canFam1.chr34 30574018 3 - 45232793 CTG s fr1.chrUn 138193851 3 - 349519338 CTG s danRer1.chrNA 194403252 3 + 390413307 GTG a score=882.0 s hg17.chr17_random 987399 19 + 2618010 caccattattcctcactgc s panTro1.chr19_random 211975 19 + 57627672 caccattattcctcactgc s mm5.chr11 121403033 18 + 121648857 CACCATTACT-CTTGTTTA s rn3.chr4 133982941 16 + 187371129 GACCACTCCTCCATGC--- s canFam1.chr34 30574021 19 - 45232793 CACAGACCACTCACACTGC a score=1692.0 s hg17.chr17_random 987418 3 + 2618010 aca s panTro1.chr19_random 211994 3 + 57627672 aca s mm5.chr11 121403051 3 + 121648857 ACA s canFam1.chr34 30574040 3 - 45232793 ACA a score=7898.0 s hg17.chr17_random 987421 49 + 2618010 agggaggaaactatagcacagggagggtgagccactcgcccagggccac s panTro1.chr19_random 211997 49 + 57627672 agggaggaaactatagcacagggagggtgagccactcgcccagggccac s mm5.chr11 121403054 48 + 121648857 AGGGAAGAAATCACAGCCCACAGA-GTTAAGCCTTCTATGCAAGGCCAC a score=5732.0 s hg17.chr17_random 987470 44 + 2618010 atagctgtgaggggagaactaggaattctcatccagCCTTCAGG s panTro1.chr19_random 212046 44 + 57627672 atagctgtgaggggagaactaggaattctcatccagCCTTCAGG s mm5.chr11 121403468 44 + 121648857 GCATTGGTAAGTGAGATACTCAGAATGGTTATCCAGCACTAGAG a score=747.0 s hg17.chr17_random 987514 50 + 2618010 AAA--ATTACATGTGGACTGGATGTGACGGATCTTGAGCCACGCTGACAATT s panTro1.chr19_random 212090 50 + 57627672 AAA--ATTACATGTGGACTGGATGTGACAGATCTTGAGCCACGCTGACAATT s mm5.chr11 121403512 48 + 121648857 CTATTATTACCTGTGAAAGAAGAGTGATAGAAGCTGAA----GAAACCAACT s fr1.chrUn 9084745 35 + 349519338 AAA--TCTACTTTCAGAT-----------AATCTTTGTCAACGCTGCT---- a score=5984.0 s hg17.chr17_random 987564 54 + 2618010 GAGTCCCTGTCCCTCAG----TGGGTTTCAGAAGAGAGGCCTCCCCTCTCC-CACATCC s panTro1.chr19_random 212140 54 + 57627672 GAGTCCCTGTCCCTCAG----TGGGTTTCAGAAGAGAGGCCTCCCCTCTCC-CACATCC s mm5.chr11 121403560 57 + 121648857 --TTCTCATTCCCTCAGATAACAGACATCAGGAGAGAGCTTCCCCTTCTCCAAACATGT s fr1.chrUn 9084780 45 + 349519338 ---------TTTCTCAG----AGGACTCTTCATCCGAGCCTTTCCCTTTGC-CGCTCCC s danRer1.chrNA 236983390 54 + 390413307 GAGTGCGTGTACCTCGGGCA-GAGCGTGCAGGGCACGGCCCCCCCCCCCCC-AACG--- a score=484.0 s hg17.chr17_random 987618 159 + 2618010 CAGGAGCTCAGAGGC-CCT--------GGGATGGGCCGACAGTTCTTGGCCAGGTGGCTGCTCCTG---CGGTCACAGCACTTGGAGGTGCTGGCCTGCGTGCAGACGCCCCCTGTGCCTGT-----------------------------------------------GGGGTC------------------------------------CTCTCCGGGCCTGGCCTGG---------------CCTCAGTCCCA-----------------------CTGGCCAC-------CCTCG s panTro1.chr19_random 212194 206 + 57627672 CAGGAGCTCAGAGGC-CCT--------GGGATGGGCCGACAGTTCTTGGCCAGGTGGCTGCTCCTG---CGGTCACAGCACTTGGAGGTGCTGGCCTGCGTGCAGGCGCCCCCTGTGCCTGTGGGGTCCTCTCCAGGCTGGCCCGCGTGCAGGCGCCCCCTGTGCCTGTGGGGTC------------------------------------CTCTCCGGGCCTGGCCTGG---------------CTTCAGTCCCA-----------------------CTGGCCAC-------CCTCG s mm5.chr11 121403617 241 + 121648857 TAGCACTTCTGAGGCTTCA--------AAGATGGTCAGGCAGCTAAGGTCCAGGAAACTGGTCATG---GGGTGTTTTCCATCTGAGGAATTAGACTGTCTGGGAACACACTGCATGCTTGT-----------------------------------------------TGGGTCCAGCCCTCTTCACTTATTTGCCCCAACTGGAGCTGACCCTCCTAGTTCAGCTTGTAGAGCCCAGACAAACCATCACTTCCAGCATAATAGGGGAAGAACCTCCTCTAGCCATTGATAGATTTTG s danRer1.chrNA 236983444 147 + 390413307 CTGGATCTCAGAGGC-CCCAGGCCAGGGAGAGGGGCCGGGCTCGCTCCCCAAGAAGGGTGCGTGTGCCTCGGGCAGAGCGCGCAAGG-------------CACAGGCCCCCCCCA---CCGC-----------------------------------------------TGGATC------------------------------------TCATAGGCCCCAGGCCAGG----------------------GAGA-----------------------GGGGCCGG-------GCTCG a score=12828.0 s hg17.chr17_random 987777 145 + 2618010 ---CTCGGGGATCGCTAGGGGTCCTTGGACCTCAGACCATG-----------CAGGGCCTCCCTTTGCAGAACAGGAAAATAGGACGGCCACCCTCAGGCCACCGTCCATGAGCATCACAGGGGCAGGTTCTTATCTCTGGGCTGGACGTGT-----CAAGGCT s panTro1.chr19_random 212400 145 + 57627672 ---CTCAGGGATCGCTAGGGGTCCTTGGACCTCAGACCATG-----------CAGGGCCTCCCTTTGCAGAACAGGAAAATGGGACGGCCACCCTCAGGCCACCGTCCATGAGCATCACAGGGGCAGGTTCTTATCTCTGGGCTGGACGTGT-----CAAGGCT s mm5.chr11 121403858 132 + 121648857 ---C-CAGGAACAGCTGGGGATCATTGGACTT--GATGAGG-----------AAGCCACACCATCTGTATAATA-GCAAATATGATAGTCACCCATGGACATCAGTCAAGGACTACCATGGCATCAGG---------ATGGGACAGATGTAT-----CAGGGCC s canFam1.chrUn 6334119 135 + 91062872 ---CCTGGGTCCCGCTGGCGGCCCTTGGACCCCAGGCCTAG-----------CGGGCCTGCCTTCTGCGGAGCA-GGAAATAGGACGGTCAGC-----ACAGTGTCCCGGGACCGTGACCGCCGCTGG--CCTGGTTCCGCCCTAGGCGCG-------AAGGCG s danRer1.chrNA 236983591 137 + 390413307 CTCCCCAAGAA-------GGGTGCGTGTACCTCGGGCAGAGCGCGCAAGGCACAGGCCCCCCCCCCACCG-----CTGGAT----------CTCATAGGCCCCAGGCCAGGG-----AGAGGGGCCGGTCTCGCTCCCCAAGAAGGGTGCGTGTACCCCGGGCA a score=-1993.0 s hg17.chr17_random 987922 59 + 2618010 GGGCTTGGGGGCCAGAAGCTTCC----CAGCAGGCCTCCCACTGGCCACAAG-ACA-CAAGCAGC s panTro1.chr19_random 212545 59 + 57627672 GGGCTTGGGGGCCAGAAGCTCCC----CAGCAGGCCTCCCACTTGCCACAAGAACA--AAGCAGC s canFam1.chrUn 6334259 42 + 91062872 GGGGGTGCGGGGGGGATGC-----------CGGGCTCTGGAGTCTCCAGCGG-G----------- s danRer1.chrNA 236983728 62 + 390413307 GAGCGCGCGGGGCACAGGCCCCCCCCACCGCTGGA-TCTCATAGGCCCCAGG-CCAGGGAGAGG- a score=-773.0 s hg17.chr17_random 987981 25 + 2618010 CCCTCAGCCCTGCAGCCACGTCCTC s panTro1.chr19_random 212604 25 + 57627672 CCCTCAGCCCTGCAGCCACGTCCTC s mm5.chr11 121404015 22 + 121648857 CCTTTGGGTTTGCAT---CACCCTC s canFam1.chrUn 6334311 17 + 91062872 ACCTCGGTCC--------CGGCTGC s danRer1.chrNA 236983790 14 + 390413307 -GGCCGGGCT--------CGCTC-- a score=543.0 s hg17.chr17_random 988006 4 + 2618010 TCTG s panTro1.chr19_random 212629 4 + 57627672 TCCG s mm5.chr11 121404037 4 + 121648857 ACTG s danRer1.chrNA 236983804 4 + 390413307 CCCA a score=64.0 s hg17.chr17_random 988006 7 + 2618010 TCTGACA s danRer1.chrNA 236983804 7 + 390413307 CCCAAGA a score=57.0 s hg17.chr17_random 988010 3 + 2618010 ACA s danRer1.chrNA 236983808 3 + 390413307 AGA a score=91.0 s hg17.chr17_random 988010 1 + 2618010 A s panTro1.chr19_random 212633 1 + 57627672 A a score=-751.0 s hg17.chr17_random 988013 23 + 2618010 GGGCCCCTCTTGCCCCAAGCCCA s mm5.chr11 121404041 18 + 121648857 ----CTCACCTGTGCCAGGTC-A s canFam1.chrUn 6334328 23 + 91062872 GTGTCCGTGCTGCCCGGAGCCTG s danRer1.chrNA 236983811 23 + 390413307 AGGGTGCGTGTACCCCGGGCAGA a score=143.0 s hg17.chr17_random 988036 99 + 2618010 ----GCCGGGCCACCG----TGGCCAGCTCCACACACACATCTGGCTGAGCACTCACACCAGGCTGCGG------GGTGGTGTCACGGCCCAGGAATGCAG-GAAGACGTCTGG s mm5.chr11 121404059 90 + 121648857 ----GTGAGGC---------TGATTATTCCCACCCTCAAATCTGATTGAGTACTC----CTGGCTAAGG------GATTGTTTATTGGACCAAGAATGTTG-GAAGAAGTCTGG s rn3.chrUn 69934908 96 - 75822765 ----GCCAGGTCAGTGACGTTGGTTATCCCTACCCTCAG----GATTGAGTACTC----CTGGATAAGG------GGTTGTATCATGGACCAGGAATGTTGTAAAAAAGTCTGG s canFam1.chrUn 6334351 95 + 91062872 ----GCTGGGTGCACG-----GGGCAGCTCTGCACGC--CTCCGGCCAGGGGCAG----CAGGCCGCAGCGC---GGCAGTGTCACGTCCCAGGAATGCAG-GAGGACGGGCCG s danRer1.chrNA 236983834 91 + 390413307 GCGCGCGGGGCA--------CAGGCCTCCCCAACGCTGGATCTCATAG---GCCC----CAGGCCAGGGAGAAGGGCCGGGCTCGCTCCCCAAGAAGGGTG------CGTGT-- a score=3980.0 s hg17.chr17_random 988135 11 + 2618010 GGCTCTGGCAG s mm5.chr11 121404149 11 + 121648857 GGACTTGGCAC s rn3.chrUn 69935004 11 - 75822765 GGACTTGGCAT s canFam1.chrUn 6334446 11 + 91062872 GGGTCTGGCAT s fr1.chrUn 9089784 10 + 349519338 -GACTCAGGAG s danRer1.chrNA 236983925 11 + 390413307 ACCCCGGGCAG a score=-5884.0 s hg17.chr17_random 988146 19 + 2618010 ------AGAGGCATGGCCATGCGCC s panTro1.chr19_random 212756 19 + 57627672 ------AGAGGCATGGCCATGCGCC s mm5.chr11 121404160 17 + 121648857 -------GGGGGATGATGACAC-TT s rn3.chrUn 69935015 17 - 75822765 -------GGGACACGATGATAC-TT s canFam1.chrUn 6334457 19 + 91062872 ------GGACGCATGGCAAGACACC s fr1.chrUn 9089795 19 + 349519338 ------AGGGGGGTGTTTTCGCTGC s danRer1.chrNA 236983936 19 + 390413307 AGCGCGCGGGGCACAGGCC------ a score=17002.0 s hg17.chr17_random 988165 272 + 2618010 AAGAATGTGCCTTGTAGAGACATAATTATGCATT--GGGGGAATACGGCGTAACAAACCCGGTGGATGCCACCGACTCCACTTACT--TTACTGAGAGCTGAGAGGACAGC--AAAGTGCGGCA---------------CTGACCCTCAGGAGGGG-AGGGCGCTGGCTGGTGCCCACCGTCCTGCAGAGGACTGAGGGATGC----------GTGGGCATGGG-TGGGCACAACCGTGG-------------------GGGCGCTGGCCTGGGGGAGGAGGAAGGAGGC--CGGGC--GAGGGCGTGGGCAGCGCTGTCCTGGCTGA s panTro1.chr19_random 212775 272 + 57627672 AAGAATGTGCCTTGTAGAGACATAATTATGCATT--GGGGGAATATGGCGTAACAAACCCGGTGTATGCCACCGACTCCACTTACT--TTACTGAGAGCTGAGAGGACAGC--AAAGTGCGGCA---------------CTGACCCTCAGGAGGGG-AGGGCGCTGGCTGGTGCCCACCGTCCTGCAGAGGACTGAGGGATGC----------CTGGGCATGGG-TGGGCACAACCGTGG-------------------GGGCGCTGGCCTGGGGGAGGAGGAAGGAGGC--CGGGC--GAGGGCGTGGGCGGCGCTGTCCTGGCTGA s mm5.chr11 121404177 273 + 121648857 AAGGCTATATAGTGTATATCGATAACTATGTATTTAGGAAGCATGTGAGTTAGTATGCTT------TGCCAAGGCCCAGTTTTGTT--TCATTGAAAGCCAAGGTAATAGT--GAAGTTCTGAAGCCAGGAAAATATTGCAGGCCTTCAAGAGATGCAGAATACTACATTATCATCTCCTT-----AGGGGATTAGAGGATAC----------CTTCAGAGGGGATGGACATGATTAGGG-------------------GTACCATTGAATGCCCAAGGAGG--GAAGGC--CATTC--CAGGAC-----TAATACTGTCCTGGCCAA s rn3.chrUn 69935032 273 - 75822765 GAGACTGTATGTTGTATATCGATAACTATGCATTTGGGGAGCAGGTGAGTTAATAAGCCT------TGTCAAGCACCAATTTTGTT--TCACTGAAAGTGAAGGTAATAGT--AAAGCTCTGAAGCCAGAAAAATATCCCAGGCCTTCAAGAGATGCAGAATATCAAGTTATCATATCCTT-----AGGAGTTTGGAGGATGC----------CTTTGGTGGGGATGTACATGATTAGGG-------------------GCACCAGTGGTTGCCCAAGGAGG--GAAGGC--CATTC--TAGGAC-----TAATACTGTCCTGGCCAA s canFam1.chrUn 6334476 233 + 91062872 AAGAATGTGCCTCGTCCAGAGATAATTGTGCGTT--TGGGGAATATG-CGTAACAGACCCAGCG--GGGCCCTGATGCCGCCTGCG--TCCCTGGGAGCTGAGGCCGCGGCTGGGAAAGCGGC----------------CGCCCCCTCGGGAGGCG---------ATCTGGGCGCGTCCTC-------GGGGCGGGGGGGCG------------------TGGG-GGGAATCTGTCGCGG---------------------ACCCTGGGGGGGCGGGGGGAC--GGAGGCTGTGGGC--GAGGGC------------GCGCCGGCTGA s fr1.chrUn 9089814 275 + 349519338 GAGACGGGACGCAGTGAGGACACCGG----------CGGCAGAGATGCTGGAACAAACTGG-----AGAAGCTGGCACAGCTGATTGCTCGCTGGG------GAGAGTGGTGGGGGGAGCGGTG---------------GTGGTGTTGGGGGGGAC-----CCCTGGCTGCTGGATCCAGG-----AGGCGGCTGAAGGGGGCACTCGGGTTTGTGGAGATGGG-AGGGTAAAGGAGGGGTAGATGGCAGACTATAAGGAGGGGATGTTTTTGGGGAGGAGGGAGGTGGC--CGTTCTGGAGGGGGAGGCGGAGGATCCTCTGG---- a score=-472.0 s hg17.chr17_random 988437 14 + 2618010 -TGGCTGAGGAGCCA s panTro1.chr19_random 213047 14 + 57627672 -TGGCTGAGGAGCCA s rn3.chrUn 69935321 14 - 75822765 -TGGCTTGGGACCAA s canFam1.chrUn 6334709 6 + 91062872 ----CTTGGG----- s fr1.chrUn 9090089 14 + 349519338 TGGGTCTGGGATCA- a score=11951.0 s hg17.chr17_random 988451 59 + 2618010 GGGCGCGGCCGCAAGTGC--------GTGGCAGCGT------GGCAGGGCGGCTGAACGACCCCATTGTGTGG s panTro1.chr19_random 213061 59 + 57627672 GGGCGCGGCCGCAAGTGC--------GTGGCAGCGT------GGCAGGGCGGCTGAACGACCCCATTGTGTGG s rn3.chrUn 69935335 66 - 75822765 -------GCAGCTAGTGTAGCAGAAGGTGGCAAAGTGAACCAGGCAGACTGACTGAATAGCCCTGTTATGTTA s canFam1.chrUn 6334715 47 + 91062872 -------GGGGCGAGTGT--------G-GGCG----------GGCAGCGGGGCTGAATGACCCCATTGTGTGA a score=-742.0 s hg17.chr17_random 988510 33 + 2618010 AGTGAGGCCGAAA---GGCCAAGTGGGACGGGCAGG s panTro1.chr19_random 213120 33 + 57627672 AGTGAGGCCGAAA---GGCCAAGTGGGACGGGCAGG s mm5.chr11 121404486 35 + 121648857 AGTGTTGCAGAAGG-TGGCAAAGTGGGCCAGGCAGG s rn3.chrUn 69935401 34 - 75822765 TTTGAGACTGAAAGCCGAAAGAGTGGCTCAGTTG-- s canFam1.chrUn 6334762 13 + 91062872 ---------------------AGCAGGCCCCGGG-- a score=19976.0 s hg17.chr17_random 988543 232 + 2618010 GAAAGAAGCACATTTCATAACTTCAG-TCCACTGTGAGAGGACTGCCTGCCCCTTTTAGAAAACTTGGAAATCACAGCAAGTCTCCAGCAGGGAAACAACGCCATGGGGGAGGGGTCTTATCTCTGGGCTGCGCTATCTCCCCACCCAAAGACCACGTCAGCCTTCCGGGCATTTCTTTCAGAATT---TTAAGCCACATGTCTGTGTGTGTCTCTCTGTGCGTACAAACACG-TCT s panTro1.chr19_random 213153 233 + 57627672 GAAAGAAGCACATTTCATAACTTCAG-TCCACTGTGAGAGGACTGCCTGCCCCTTTTAGAAAACTTGGAAATCACAGCAAGTCTCCAGCAGGGAAACAACGCCATGGGGGAGGGGTCTTATCTCTGGGCTGCGCTATCTCCCCACCCAAAGACCACATCAGCCTTCCGGGCATTTCTTTCAGAATT---TTAAGCCACATGTCTGTGTGTGTCTCTCTGTGCGTACAAACACGCTCT s rn3.chrUn 69935435 172 - 75822765 GAGTGATGAACATCTGAT--CTTCTGCCCCACTCAGGGGGGAGCTCACTGCCCACTCAGGAGACTTAGGTTGCATC-CAAGTC-----CTAGAAAATAGTAGAATG-----------------------------ACCTCACCATCTGTAGGCTA--------------GCAGAACTCTCA---------TAAGTCACATGTCTAGGCATGTACGTCTATGTGT--AAACA---TTT s canFam1.chrUn 6334775 171 + 91062872 GAGAGA---------------------TCCGC-GAGAAAGTGCTGCCT-CCCCTTTTAGAAAACTTGGACGTTGCAGCA------CAGCAGGGAGAGCGCGTCGTGGG---------------------------CCCCCCCAAGCCG--GCCTCCACTGCCCCTTGGGGCGCGGCCCCCAGGGCTGGCTCAGGCCGCGTGCCCG-GTGTG------TGAGTGCGCAACCATG-TCT a score=13755.0 s hg17.chr17_random 988775 112 + 2618010 GTTTATGTGTGTCCTCACATCGCTGGGGTCATGTTGTATGTGTTGTAAAAATTACTTTTTAACTTGTGTAATATGTGTATatatatataacaaaccctaccgtcttaactgt s panTro1.chr19_random 213386 112 + 57627672 GTTTATGTGTGTCCTCACATCGCTGGGGTCATGTTGTATGTGTTGTAAAAATTACTTTTTAACTTGTGTAATATGTGTATatatatataacaaaccctaccgtcttaactgt s rn3.chrUn 69935607 94 - 75822765 GTC--CGTGTGTACTCACTAAGT--AGGTCATGTTACATATATT---AAAATAAATTTT--AATTATATA--------AAATATATGTAGCAAAAGGTACCAT-TTAACCAT a score=0.0 s hg17.chr17_random 988887 5 + 2618010 ttttg a score=91.0 s hg17.chr17_random 988887 1 + 2618010 t s panTro1.chr19_random 213498 1 + 57627672 t a score=857.0 s hg17.chr17_random 988888 4 + 2618010 tttg s panTro1.chr19_random 213499 4 + 57627672 tttg s mm5.chr11 121405036 4 + 121648857 TTTA a score=-85.0 s hg17.chr17_random 988892 8 + 2618010 aatcta-----ca s panTro1.chr19_random 213503 8 + 57627672 agtcta-----ca s mm5.chr11 121405040 13 + 121648857 ACCCTAGAACTCA s rn3.chrUn 69935701 8 - 75822765 -----AGCACTCA a score=928.0 s hg17.chr17_random 988900 41 + 2618010 g-cttggtggcatgaaa-tacatt---catattaactgtaa-----------ctgtc s panTro1.chr19_random 213511 46 + 57627672 ggcttggtggcatgaaaatacgtttcacat-ttaactgtaa----------actgtc s mm5.chr11 121405053 48 + 121648857 A-TTTTATATCATTAAA-TATGGG---CAT----ACTGTGAAGTCATCGCTATTGTC s rn3.chrUn 69935709 48 - 75822765 A-TTTGGTACCATTAAA-TATGGG---CAC----ATTGTGAAGTCATTGTCATTGTC s canFam1.chrUn 6335031 45 + 91062872 -gcccggctggattgtg-cacgtt---cac----gttgtgc---cgccaccaccgtc a score=26605.0 s hg17.chr17_random 988941 203 + 2618010 aatttccag-atgttttatcttcccgagccgaaactctgtcccc-attaaacacgaacttcccagtccccctcccccagcacccaccgttctg-tttctgcctctatgaagctgacaacccagggaccgcgtacgagtggaatca-gcaggatttgcccttatgtgtccggttatttccctcggcacagtgtcctcagggttcatcc s panTro1.chr19_random 213557 205 + 57627672 aatttccaggatgttttatcttcctgagccaaaactctgtcccccattaaacacaaacttcccagtccccctcccccagcacccaccgttcgg-tttctgcctctatgaagctgacaatccagggaccgcgtatgagtggaatca-gcaggatttgcccttatgtgtccggttatttccctcggcacagtgtcctcagggttcatcc s mm5.chr11 121405101 153 + 121648857 TGTTTTTAGAACTTTCTGTCTTCTCAACCTGAAACGCTGTCCCC-ACTGAACACAGACACCCTGG---CTCTCCCTCAGTAGCCAGTGCTGTACTTTCCATCTCCAT----------------------------ATTCGAATCACACTGGATTTATCCTTCTGT----------------------AATGTCCTTAGGACTTATCT s rn3.chrUn 69935879 146 - 75822765 -TATTTTAGAACTTTCCATCTTCCCAAGCTGAA-------CCAC-ATTGAACACAGACATCCTGG---TTCTCCCTAAGTAGCCAGTGCTGTTTTTTCCATCTCTGT---------------------------ATATGGAACCACACTGGATTTATCCTTCTGT----------------------AATGTCCTTAGGACTTATCT s canFam1.chrUn 6335076 147 + 91062872 tgtctccag-attctttgtctt-GTAAGAGGGAGCCTGTCCCAC-GCCGTACCCG----CCCCGG---TGCCC-----GCGTCCAC--------TGGCCGTCCCCA-----------------GGGCCTCCCGGGAGCGCAACCGTGTGGGA--------CGCGT------------CCCTCTGCGTTGCGCCCTCCGTGTCCACCC a score=0.0 s hg17.chr17_random 989144 19 + 2618010 gtgtcacagcaagcgtctg a score=4162.0 s hg17.chr17_random 989144 15 + 2618010 gtgtcacagcaagcg s panTro1.chr19_random 213762 15 + 57627672 gtgtcacagcaagcg s mm5.chr11 121405254 15 + 121648857 GTGTTGCAGTATGTG s rn3.chrUn 69936025 15 - 75822765 ACGTTGAAGTAAATG a score=194.0 s hg17.chr17_random 989159 4 + 2618010 tctg s panTro1.chr19_random 213777 4 + 57627672 tctg s mm5.chr11 121405269 4 + 121648857 TTAA a score=2994.0 s hg17.chr17_random 989163 13 + 2618010 actttccttcctc s panTro1.chr19_random 213781 13 + 57627672 actttccttcctc s mm5.chr11 121405273 13 + 121648857 GCTCTTTCTTATC s canFam1.chrUn 6335223 13 + 91062872 ACCCTcctccttt a score=117475.0 s hg17.chr17_random 989176 1254 + 2618010 ttccaggctgggtcacagcc-------cttcatgtggatggaccacgttttattca----ctcatctggcaacggtccttctggctgttgtga----ataacgtggctgtgaacgtatacgtcttgttctgttcaaagcaaaac-acacattttcattCTTTCAAAACTGTCCTTATGTTTCCTGTGGAATGCCCTGGACTCAGGGTTTGGGGGAGCCGGTCATTATATCACACCCGGGGTTTTCGCTGGAAAGAGCCTCAAGCCGTATGTGCTCTCCCGACGCCATCCTCCCCACAGTTGGCTGTTGAGAATTTTTTCTCTTTGGAGGACTGTGGGGTCTCTCTAGCCTGGCCATCCTGAGTCCAAGTTTCTTTTCCCTGACAACAGACAAATGAGCGAGTAGCCCTCTCAGTCCACGAGCTGACCCTTCAGAGGCTGGGGTTGCAAACCCTGATCCTTGGTGGGCTGGGGTCGGCCTCTGGGAGCCCCTCCTTCAGAGTGAGGGGCTGGTGCAGGTTTTCTTTTCTCCTCACTGAGAGTTTTTTCTG--CTGCCTGAGAGAAGAGGGTGAAGGCTCCCGGTAAAGAGGATGGGGTGCAGGCTCCTGAGCCCACCGACAGCCCCGTCCAGCGCTGACCTGTGGGAAAACGGCCTCTTGGCAGGTCAGTCCAGGCGGTGGTTTCCCTGGAGCCAGGGGCTGGGTTCCAGAGCCCGGCCTTCCACCCCTACAGCGGGCAGGGCTGACGGGCGCGAAACTGGGAGCGTAGCTCTGGGAGGTGGCCTCGGGGAACCATTTTCCCACCGGGCGGGCCCTTTTGTTCTCCTGTCTGTGCGCGCAGGGCAGCCAGGTCCC----GGGATGGACCCTATTTTGAGAGATTTATTGACTTTCTTTTTCTTTTGAA-----AGGGCTGTGGCCAGGCAGAATATTGAAGC-GAAGGAGCCCGACAGTAGCCGCTCTCTCAGGGTCTAAGGCAACAGAGAGCTCCC-AGGTGTGTATAGA-GCGGGGCGGGAGTCGGGTCTGCAGGACGGCCGGTGGGGAAAGGCCACGAGGTCTGCAGCTGGGGGCCGGGCCGTGCTCAGCGGTGTGTGG---TGGGGACACCAGGAAAGGCTGTGGGGGGTCTTGGGAGTCGGCACCCTCCCTGAGGGGCCCTAAGTCCCTGCCAGCTTGTGGAACCAGAGGGTCCCTGGAACAGTCTGTGTGGACCCCCAGGGTCCTCTCTCCACCCCCGGGCGTTGACCTCCTGCGGGATGCTGACCT--GACTCGGgtgtgtgg s panTro1.chr19_random 213794 1254 + 57627672 ttccaggctgggtcacagcc-------cttcatgtggatggaccacgttttattca----ctcatctggcaacggtccttctggctgttgtga----ataacgtggctgtgaacgtATACGTCTTGTTCTGTTCAAAGCAAAAC-ACACATTTTCATTCTTTCAAAACTGTCCTTATGTTTCCTGTGGAATGCCCTGGACTCAGGGTTTGGGGGAGCCGGTCATTATGTCACACCCGGGGTTTTCGCTGGAAAGAGCCTCAAGCCGTATGTGCTCTCCCGACACCATAC-CCCCACAGTTGGCTGTTGAGAATTTTTTCTCTTTGGAGGACTGTGGGGTCTCTCTAGCCTGGCCATCCTGAGTCCAAGTTTCTTTTCCCTGACAACAGACAAATGAGCGAGTAGCCCTCTCAGTCCACGAGCTGACCCTTCAGAGGCTGGGGTTGCAAACCCTGATCCTTGGTGGGCTGGGGTCGGCCTCTGGGAGCCCCTCCTTCAGAGTGAGGGGCTGGTGCAGGTTTTCTTTTCTCCTCACTGAGAGTTTTTTCTG--CTGCCTGAGAGAAGAGGGTGAAGGCTCCCGGTAAAGAGGATGGGGTGCAGGCTCTTGAGCCCACCGACAGCCCCGTCCAGCGCTGACCTGTGGGAAAACGGCCTCTTGGTAGGTCAGTCCAGGCGGTGGTTTCCCTGGAGCCAGGGGCTGGGTTCCAGAGCCCGGCCTTCCACCCCTACAGCGGGCAGGGCTGACGGGTGCAAAACCGGGAGCGTAGCTCTGGGAGGTGGCCTCGGGGAACCATTTTCCCACCGGGCGGGCCCTTTTGTTCTCCTGTCTGTGCGCGCAGGGCAGCCAGGTCCC----AGGATGGACCCTATTTTGAGAGATTTATTGACTTTCTTTTTCTTTTGAA-----AGGGCTGTGACCAGGCAGAATATTGAAGC-GAAGGAGCCCGACAGTAGCCGCTCTCTCGGGGTCTAACGCAACAGAGAGCTCCCTAGGTGTGTACAGA-GCGGGGCGGGAGTCGGGTCTGCAGGACGGCCGGTGGGGAAAGGCCACGAGGTCTGCAGCTGGGGGCCGGGCCGTGCTCAGCGGCGTGTGG---TGGGGACACCAGGAAAGGCTGTGGGGGTTCTTGGGAGTCGGCACCCTCCCTGAGGGGCCCTAAGTCCCTGCCAGCTTGTGGAACCAGAGGGTCCCTGGAACAGTCCGTGTGGACCCCCAGGGTCCTCTCTCCACCCCCGGGCGTTGACCTCCTGCGGGATGCTGACCT--GACTGGGgtgtgtgg s canFam1.chrUn 6335236 881 + 91062872 ctgca-gctgagtcatattctgctgaactacatt--------ccacattttgttcatccgtccacccagccgcggacactcgggctgttcccgcatcgtgacgctgccgcgaac----------cagggtgtgcagaGCAGAACGGTACCCGCGAACTCTTGCAAAA-TGTTCTCGT-TTCCCTGTGGAATACGGCCAGCTCCGGAGTTGAGCTAGCTAG------------------------CGGTGCCAGGGTCCTTGAGCCTT-----------------------CGCCGC---------------------------TGGAGGGT--CGGGGTCCCTCTAGCTCG--CGACCTCAGTCCAAGTTCTT-----CTGACAGCCAACGGG-GAGCGCGTGG--------------GCGCTGGCCGT---GAGGCGCGGGATGGGGGGTGCGCCACTCCATCCACTGCGCTTCGGGCCCACAGACCCACTTGGCAGAGCGGGGTGC-----CGGGTCCCCTGTGC------CTGACGGGCCTCCGTGGCCTGTGAGCGAGCGGAAGGCAGAGGCTCCAG------------------------------------------CCG---------GGCCCGTGGGGAAGCAGCCTCGTGCTGGGTCGG-------------------------------------CCAAGGCCCGGCTGCCCA-----------------------GGCCGCGGCAC----AGCGTGGCT--------TGACCACATG------------CACCGGTCGTGTTTCTCTGGCC------CCGCACGCTCAGGGCAGTGTGTCCTCCGTGGGGATGAGC----------------------CTCCCTTTCTTCTCTGAACTGGTAGAGGCGCGGCCGGGTGGAGCGGAGAAGCAGACGTGGCCAGACCTTGG------------------------CGGAAGGTCCCCTCGTTCTAGGAGGACGTGCTGCATGTGCGAGGCTTGCGGCAGGCGCTCTGGGGAGAGGCCCAGGGATCTGCC--------CCGGGCCGGGGCCAGGCAGGAGTGGGGATGGGGATGCAGGG---------GGGCGACCCTGTGC----GCACCCTCC--GAGGGGC----------------------------------------------------------------TCTCCTCCCCTCTCCCGGG-ACAGGCCTCCTGGGAGGTGCTGGACGCAGACTCCGGCCTGTGA a score=9791.0 s hg17.chr17_random 990430 103 + 2618010 gggtgtgcccatgtgtgtccttgagtgggtatgtgtaggggtgcgtgtgtgtggctgtgCAAATCGCCAACGACAATCTTCCGTCCAGGGAAACGGACGCCGT s panTro1.chr19_random 215048 103 + 57627672 gggtgtgcccatgtgtgtccttgagtgggtacgtgtaggggtgcgtgtgtgtggctgtgCAAATCGCCAACGACAATCTTCCGTCCAGGGAAACGGACGCCGT a score=50988.0 s hg17.chr17_random 990533 308 + 2618010 GTCCCTAGGAGGAGTGTGGCTTTTCCTGTCCTGGGCTGGGGATGTGGGACCCCTTTTAACCTACTTTTGAGAGCAGATCTGGGGGGGCTTGTTTTTTAAAAATCACAAAATAAACATAACTATTGTTCTCCCACTGATGAAATTACCCATT-TTCACGACCCAGGGGCGATCTGTTTTCATCCCTTCGTGTAGGCCACTGCGGACCTTTTCTCCTTTTATGCACACGACAGTATGTTTTCAGGCTTTTCCAAATTAGGAGCACATTTTATATATTTGTATAATTTTCTGGATTGATTTTTAAAATGGAA s panTro1.chr19_random 215151 308 + 57627672 GTCCCTAGGAGGAGTGTGGCTTTTCCTGTCCTGGGCTGGGGATGTGGGACCCCTTTTAACCTACTTTTGAGAGCAGATTTGGGGGGGCTTGTTTTTTAAAAATCACAAAATAAACATAACTATTGTTCTCCCACTGATGAAATTACCCATT-TTCACGACCCAGGGGCGATCTGTTTTCATCCCTTCGTGTAGGCCACTGTGGACCTTTTCTCCTTTTACGCACACAACAGTATGTTTTCAGGCTTTTCCAAATTAGGAGCACATTTTATATATATGTATAATTTTCTGGATTGATTTTTAAAATGGAA s canFam1.chrUn 6336117 274 + 91062872 GTCCCCAGGAGGC-TGTGGCTGGGCCTGCCCCGGGTTAGGGCCAGGGACCCCTCCTTAACCTACTTTTGAGAATAGACTTTGAGGAGCTTTGGTGTTTAAAATCACAAA------ATGACTACTGTTCTCCTACTTATCAAAGTGCCCATTGTTCATGACCCAGGGATGATCTATTTTAATCTTTGGGTGTGGAT-------GATTTTCTCTACTTGTATACACATG--GGTATGTTTTCAGGGTTTTCAAAGTTA-------------------CATGCTGTTTTCTGGATTGATCTTTGAAATTTAA a score=4968.0 s hg17.chr17_random 990841 25 + 2618010 TCTTGTGGACAGACTTCTGTGACCT s panTro1.chr19_random 215459 25 + 57627672 TCTTGTGGACAGACTTCCGTGACCT s canFam1.chrUn 6336583 25 + 91062872 TCTTGCAAACAGATTTCCACGCCCT a score=46830.0 s hg17.chr17_random 990866 515 + 2618010 TAACTGTGGATTTACATCAGGCTAATGGTTGTGAAGGTTTTTATTTTGTGAACACCATCAATGGATGTTGAGATTTTAGGTTCCCTTTTTCCTTGCATTATAAACAATGCTTTTTCTCTCCTTCTCCCTTTGCATACACTCCCAGCAGTGTCAGTGAGCTGGGGCCTCGTGCTCCTGGGTCCTGGCGGGGCACGAGGCTGGTACGGGGAGCTTCTCCTAGACTGTGTGGCCCCTTAGCAGTGTTCCTACCGTGCAAAGGCCCTTCCTGGTTTACAGAAAGGATCTGGAGGGGGAGAAGAGCCTCGCGGCCCGCATGATGTTGGACCAGCGTTTGCCTCCTTCTGAGGCCCCCGCCTCCCACCAGGCCTGGCGCTGCTTTTCACATCTCCGCCCCAGCCCAGGTCCAGC--------------------------GTGTCTGAGTGTGGACTCACCCTCTGTTCCCAGCCCCAGTCCATGGATGTGAATAAAACGGAAACTAGAATTCAGGAGCCTGAGAGGCCAGGATGCCAATCTCTGTA s panTro1.chr19_random 215484 541 + 57627672 TAACTGTGGGTTTACATCAGGCTAATGGTTGTGAAGGTTTTTATTTTGTGAATACAATCAATGGATGTTGAGATTTTGGGTTCCCTTTTTCCTTGTGTTATAAACAATGCTTTTTCTCTCCTTCTCCCTTTGCATACACTCCCAGCAGTGTCAGTGAGCTGGGGCCTCGTGCTCCTGGGTCCTGGCGGGGCACGAGGCTGGTATGGGGAGCTTCTCCTAGACTGTGCGGCCCCTTAGCAGTGTTCCTACCGTGCAAAGGCCTTTCCTGGTTTACAGAAAGGATCTGGAGGGGGAGAAGAGCCTCGCGGCCCGCATGATGTTGGACCAGCGTTTGCCTCCTTCTGAGGCCCCCGCCTCCCACCAGGCCTGGCGCTGCTTTTCACATCTCCGCCCCAGCCCAGGTCCAGCCTATGTCTGCAGGGCCTGCTCAGAGCGTGTCTGAGTGTGGACTCACCCTCTGTTCCCAGCCCCAATCCATGGATGTGAATAAAACGGAAACTAGAATTCAGGAGCCTGAGAGGCCAGGATGCCAATCTCTGTA a score=1202.0 s hg17.chr17_random 991381 5 + 2618010 ACCTC s panTro1.chr19_random 216025 5 + 57627672 ACCTC s danRer1.chrNA 111464874 5 - 390413307 ACCCC a score=7992.0 s hg17.chr17_random 991386 216 + 2618010 AGGACAGAGGCCTAGGGGCAGGGGGGCCTGA-GTGACAGGCCAGGGGAAA--TGGGGGGCTGTGTGACAGG-CCAGGGACAATGGGGGGCTGT----------------------------------------------------AGCC-----ATACTAGCCATACACGGG--CTGAG-GCCCAGGGTGTCCCCTGGCCGCTGTCCTCTGCATAGGCCCTGAGGCCAGGGACTCCTCCC------------ACCTTGTTCTGGGCAC-----------TGGGGGCTCA-----GCTCAGGCCTGTTC s panTro1.chr19_random 216030 265 + 57627672 AGGACAGAGGCCTAGGGGCAGGGGGGCCTGA-GTGACAGACCAGGGGAAA--TGGGGGGCTGTGTGACAGG-CCAGGGGAAATGGGGGGCTGTGTGACAGGCCAGGGGAAATGGGGGGCTGTGTGACAGGCCAGGGACAATGGAGAGCT-----ATA---GCCATACGCGGG--CTGAG-GCCCAGGGTGTCCCCTGGCCGCTCTCCTCTGCATAGGCCCTGAGGCCAGGGACTCCTCCC------------ACCTTGTTCTGGGCAC-----------TGGGGGCTCA-----GCTCAGGCCTGTTC s canFam1.chrUn 6336716 204 + 91062872 AGGGTGGAGGCCCGGGGGC--GGGGGTCTGCTGTG-----------------TGCGGGGCCCAGCAGCAGA-CCGAGGGCCCAGAGGCACCGC---------------------------------------------------------------ACTGGTCACTTCCAGATCCTGAGAGCCCTGTGCTGCCCCTGAGCCTCACCGGCTCCACAGG----------AGGGGCCTCCCCCCTGCCCCAGCTGCCCCAGCTCTGGGCAT-----------TTGGGGCCCCAGACTGTTCAAACCCCACC s danRer1.chrNA 111464879 238 - 390413307 TGGGTAGCTTTCTGGGGTCAGAGGCCCCTAG-GTGGAGGGCCAGGGGGCACCCTGGGGCCTATACTGCAAGTCCAGGGAGAGAGGTGGACCCC-----------------------------------------------TGGGTAGCTTGCTGAGGTCAGAAGCCCATAGG--TGGAG-GGCCAGGGGGTACCCAAGGACCTGTACT----GCAAGTCCAGGGAG-AGAGGTGGACCCCTGGGT-------AGCTTGCTGGGGTCAAAGGCCCGTAGGTGGAGGGCCA-----GAAGGCACCCTG-- a score=2539.0 s hg17.chr17_random 991602 8 + 2618010 CAGCCCCA s panTro1.chr19_random 216295 8 + 57627672 CAGCCCCA s rn3.chrUn 69936815 8 - 75822765 CAGCCTTC s canFam1.chrUn 6336920 7 + 91062872 -AGGCCCA s danRer1.chrNA 111465117 8 - 390413307 GGGCCTCT a score=24548.0 s hg17.chr17_random 991610 74 + 2618010 CTTTGATGCCCAGGAAGTCCCAGGATGAAATCA-CAGGGACAGAAGCC--GGGGCTACGGCTAA-GACCCTTTGACAT s panTro1.chr19_random 216303 74 + 57627672 CTTTGATGCCCAGGAAGTCCCAGGATGAAATCA-CAGGGACAGAAGCC--GGGGCTACGGCTAA-GACCCTTTGACAT s mm5.chr11 121406031 74 + 121648857 CTTTGAAACTTAGCAAGTCTCATGATAATGAAC-CAGGGACAGAAGCT---GGCTTGCTGCTAATTAGCATTTGACAT s rn3.chrUn 69936823 74 - 75822765 CTTTGAAACTTAGGAAGTCTCATGATAATGAGT-CAGGGAAAGAAGCC---GGCTTGCTGCTAATTAGCATTTGACAT s canFam1.chrUn 6336968 75 + 91062872 CTTTGAAACCCAAGAAGTCTGATGATAATATCACCAGCGACAGAGCCA---GGTCTGCTGCTAATTACCATTTGACAT s danRer1.chrNA 111465125 61 - 390413307 ACTGCAAGTCCAGGGAGAGTTGTG-----GACC-CATAGGTAGCTTGCTGGGATCAGAGGCCCA-AAG---------- a score=12554.0 s hg17.chr17_random 991684 122 + 2618010 GGAAATGCTGATTCGGTGG---CTCAGGGGCTTCCCACCCAGCTCCCTCGGGAGGCCTAGGCCAGGGCGTCAGGGTGGGGTGCCCGAGCCTGTTCTCCCT-GCCGGAGGGCC---GGTGTCCAGGGGCC s panTro1.chr19_random 216377 122 + 57627672 GGAAATGCTGATTCGGAGG---CTCAGGGGCTTCCCACCCAGCTCCCTCGGGAGGCCTAGGCCAGGGCATCAGGGTGGGGTGCCCGAGCCTGTTCTCCCT-GCCGGAGGGCC---GGTGTCCAGGGGCC s danRer1.chrNA 111465186 119 - 390413307 ----GTGGAGGTTCATGGGGCACCCTGGGGCCTCCACTGCAAGTCC------AGGAAGAGAGGTGGACTCCTGGGTAGCTTTCAGGGGTCAGAGGCCCCTAGGTGGAGGGCCAGGGGCACCCTGGGGCC a score=8230.0 s hg17.chr17_random 991806 85 + 2618010 ATTGTCCAGGCCAGGGCTCACCCGAAAGGCCTGGAGCCTCACACGCTTTCAGGTAGGAAGTGTCCTCGGGAGCCTGGGTGGCCCC s panTro1.chr19_random 216499 85 + 57627672 ATTGTCCAGGCCAGGGCTCACCCGAAAGGCCTGGAGCCTCACACGCTTTCAGGTAGGAAGTGTCCTCGGGAGCCTGGGTGGCCCC a score=14758.0 s hg17.chr17_random 991891 81 + 2618010 TGCAGTTGTTTTGGGAAGGTTTTGCTCTGATTTTTTCCTGCATAGCTGAG------GTAAGTGCAGTTTTTGCCCTTTATTCATTGG s panTro1.chr19_random 216584 81 + 57627672 TGCAGTTGTTTTGGGAAGGTTTTGCTCTGATTTTTTCCTGCATAGCTGAG------GTAAGTGCAGTTTTTGCCCTTTATTCATTGG s canFam1.chrUn 6337536 85 + 91062872 TGCACTCATTTTGGGAAGACTTTGTTCTGATTTTTTGCCCCAAA--TGAACAAATTATACGTACAATTTTTGCCTTTTACTCATCAG a score=71689.0 s hg17.chr17_random 991972 813 + 2618010 AGAGTCTGGCCTGTCCCGCCGAGCACAGCGTTTCCCTCACGCTGGCCGTGAGCACACAAGGGTGTCCAGGGGCCACGCAAGCCTCTGGAAAACAGACAGACGCCAGTGCTGTACCCCCTGCTGCGGTCCGCAGGACCAGGACCCCGCGACCCTCCTTGAAGGGGCAGGTCCGCTGGTGGTGGGGGGCACAGAGGGGCCCAGGCCGGGGTGTCTCAGAGGAAACCAGCCGCCCACAGACATGCTGGG-CACCCATATGGTGGAGTCCTCTTGGCCACAGCAAGGGATGGAGCCCCTGACGGACTCAAAGCGTGAAGCCCAGAGAAAGGCACCACACGGGAGCACGCGGGGGTCCCAGGACAGGCACAGCCACCCACGCGGCCACAGGTGGGGTCCCGGGGCAATATATATATATAttttt-gagacggagtctcgctctgtcgtccaggctggagtgcggtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccactgtcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccacgccccactaattttttgtatttttagtagagatggggtttcaccgtgttagccagggtggtttcttatctcctgacctcgtgatccgcccgcctcagcttcccacagtgctgggattccaggcatggccaccgcgcGGCCAGCacggggtctttctttatttcccaggtgggtcttgaactcttgggctcaggtggtcctcttgcctcggcctctcaaagtgctgggattacaggcgtcagacactgcgcctggcc s panTro1.chr19_random 216665 808 + 57627672 AGAGTCTGGCCTGTCCCGCCGAGCACAGCGTTTCCCTCACGCTGGCCATGAGCACACAAGGGTGTCCAGGGGCCAGGCAAGCTGCTGGAAAACAGATCGATGTCAGTGCTGCACCCC-TGCTGCGGCCTGCAGGGCC------CCGCAACCCTCCCTGAAGGGGCAGGTCCGCTGGTGGTGGGGGGCACAGAGGGGCCCAGGCCGGGGTGTCTTAGAGGAAACCAGCCGCCCACAGACATGCTGGGGCACCCATATGGTGGAGTCCTCTTGGCCACAGCAAGGGATGGAGCCCCTGACGGACTCAAAACGTGAAGCCCAGAGAAAGGCACCACACGGGAGCACACGGGGGTCCCAGGACAGGCACAGCCACCCACACGGCCACAGGTGGGGTCCCGGGGCAATATATATATATAttttttgagacggagtctcgctctgttgtccaggctggagtgcagtggcgcaatctcggctcactgcaagctctgcctcccgggttcacgccactgtcctgcctcagcctcccaagtagctgggactacaggcacccaccaccacgccccactaattttttgtatttttagtagagatggggtttcaccgtgttagccagggtggtttcttatctcctgaccttgtgatccgcccacctcagcttcccacagtgctgggattccaggcatggccaccgcgTGGCCAACacggggtctctctttattgcccaggtgggtcttgaactcttgggctcaggtggtcctcttgcctcggcctctcaaagtgctgggattacaggcgtcagacgctgcgcctggcC a score=11671.0 s hg17.chr17_random 992785 87 + 2618010 ACATTTTTTATGTGT-GTGATTCACAACAGGGGTTTAGGGAAGGGAAGAGATAGCAAAAAGAAAAGTTCTCGTCTCAGTCAGTACCCC s panTro1.chr19_random 217473 87 + 57627672 ACATTTTTTATGTGT-GTGATTCACAACAGGGGTTTAGGGAAGGGAAGAGATAGCAAAAAGAAAAGTTCTCGTCTCAGTCAGTACCCC s canFam1.chrUn 6340338 71 + 91062872 AAGTTCCTTGTGTGTCGGGACTCACAGAGGGGGCTAGCAGAGGGCAAGAG-----------------CCCCTCCTCGGTCAGTGCCTC a score=0.0 s hg17.chr17_random 992872 14 + 2618010 TGCCCCAACAAAAA a score=491.0 s hg17.chr17_random 992872 5 + 2618010 TGCCC s panTro1.chr19_random 217560 5 + 57627672 TGCCC a score=2023.0 s hg17.chr17_random 992877 9 + 2618010 CAACAAAAA s panTro1.chr19_random 217565 9 + 57627672 CAACAAAAA s mm5.chr11 121408432 9 + 121648857 CAACAGAAG a score=27728.0 s hg17.chr17_random 992886 317 + 2618010 CCCCAACCAA---AAAGCCTCACAGTAATTATCTCCAGCAATTTCCACCC---TTTCTCCCTAAGAAATTTGAGTTGGGTGGTGGGTGGGAGGGCTTGTGCTCCCCCAGAAGCA--CTGAGGGAGAGGGAGGTGCCAGCGTCC---ACCCTTTGTGTTAGGTTTAAGCAAGT----GCTGTCTCT----GGTGCGTGGGGCCAGGGCCGGATGTCGTCGAAACACCGGAGCAGCCCAGGACTCGT---CGCAGAGGGGAGCAGGGTGTATCTTACAGGGGCC---GATGGTGCAGTCAAACCTCAGGGTCTACGGTTTTTATGGTTGCCTCGAGTCTCGTCC s panTro1.chr19_random 217574 317 + 57627672 CCCCAACCAA---AAAGCCTCACAGTAATTATCTCCAGGAATTTCCACCC---TTTCTCCCTAAGAAATTTGAGTTGGGTGGTGGGTGGGAGGGCTTGTGCTCCCCCAGAAGCA--CTGAGGGAGAGGGAGGTGCCAGCGTCC---ACCCTTTGTGTTAGGTTTAAGCAAGT----GCTGTCTCT----GGTGCGTGGGGCCAGGGCCGGATGTCGTCGAAACACCGGAGCAGCCCAGGATTCGT---CGCAGAGGGGAGCAGGGTGTATCTTACAGGGGCC---GATGGTGCAGTCAAACCTCAGGGTCTACGGTTTTTATGGTTGCCTCGAGTCTCGTCC s mm5.chr11 121408441 295 + 121648857 ACTTCTTCAAATTAATGCCCCA-AATAATCACCTCAAGG-ATTCTCACTCAGAATTCACTTTGGAAA---TGAGGTGAATG--TAGTGGTAGTGCTGG-----ACCCAGGATAG--CC-AGAAGCAGGGAGGGTCTTGCTTTCCTGCCCCTCTGCTTGGGGTCAGAGTCAGT----GCTTTCTCT-----GTGTGGTGAGCCAGGTCAG--TATCCTC---ATGCCTG--------AGGACTCATGAACCCAGAGAAGGACATGGAG--GCATAAATTGGCCTTTGGTGGTAGAGACAAGCC-CTGGGCCCAGGG-------AACTGTGGCAAGGGTCACCC s canFam1.chrUn 6340409 301 + 91062872 CCTC---------AATTCCTTGCTGCAGTTTTGTCCTGA-----CCACCC---TTTCCCCCGCAGGCACCCAGGACAGGTGGTGTGTGCT-------------CATCGGAAGCGGCCTCCTGCTGAGGGGGTGGCCAGGGTCC---A-CCTCAGCCTCCTACCCAAGCCCCTCTACGCTGCTTTTCTGGGGCCCCCGGGGCCAG--TTGGATACAATTTGAATATCTGAGCAGCT---GACGTGTGAGTGCAG-GAGGAGCCTGGCGTATTTTGTAGGAGCC-TGGATGACTTAGGCCAACTCAAGGGTCTGCATTTCTGTGAGTCTGTCCAAGTCTCACTC a score=69897.0 s hg17.chr17_random 993203 206 + 2618010 -AGGCTGGGTTGTCTTGGAACCGGGTCTCCTGTCCAGTGTTTGCACGGTGTCATT--AAAAATCACAAAACGTATGGAAGTGGTGGGTAAAGACTTTTCAACTTTGGTGATTTTGTTCTTCCCAATGGTGGAGAGAGCTTGCAGGGTCAGGAGCTGCGTGATGAGCTTGCTAGAAGTCCATGGGTGAAAACAGCCCTTGTGTGGCTCCC s panTro1.chr19_random 217891 206 + 57627672 -AGGCTGGGTTGTCTTGGAACCGGGTCTCCTGTCCAGTGTTTGCACGGTGTCATT--GAAAATCACAAAACGTATGGAAGTGGTGGGTAAAGACTTTTCAACTTTGGTGATTTTGTTCTTCCCAATGGTAGAGAGAGCTTGCAGGGTCAGGAGCTGCGTGATGAGCTTGCTAGAAGTTCATGGGTGAAAACAGCCCTTGTGTGGCTCCC s mm5.chr11 121408738 198 + 121648857 -AGGTAGGCCTGAC-TGGGCCCGATTTCTCCATTCAGTCTCT----TGTTTTGTC--ATAAAACATGAGATGTATGAAAGT-CTCAGAGAAGACTTCTCAGGTTTGAAATGTGTCTTCTTCCCAACAGTGAGGAGAGCTGG-AGGGCTCTGTGCTGTATTATATCCTGGCCAGCAGTTCAGAGGAGCAGGTGG-CCTGGCATGGTTTCC s rn3.chrUn 69939591 197 - 75822765 -GGATAGGCTTGAC-TGGGCCCGATTTCTCCACTCAATCTCT-----GTTTTGTC--AAAAAGCATGAGATGTATGAGAGTAGT-AGAAGAGACTTCTCAGGCTTGAAACTTGTGTTCTTCCCAGCAGTGAGGAAAGGTGG-GGGGCTGGGAGTCGTGCTATATCCTGGCCGTCAGTTCAAAGGATCAGCTGG-CCTGGCATGGTTTCC s canFam1.chrUn 6340710 198 + 91062872 AGGGCTGGGCTATCCTGGACCCAAGGCCCCAGT-CATTTTTTGCACGGTGACACTAAAAAAATCACAAAATGCATGAGAGTGGTGGAGAAAATCTTTTCAGCTT---------TCTTCTTCCCGGTGGCGAGGACAGCTTGCAGGGTCATGAGCTGTGTCGTGAACTTGCTAGAAGTTCCAGGGTGAGGAGGC-CCTGGCACGGTTCCC a score=-7095.0 s hg17.chr17_random 993409 76 + 2618010 GGGTACGGCTGGCCGACCTGCCTAAAGC-----CAGGCAT----GGACCCGAGGT---------GCCCACACTG--------------------------------CTTGGAGCTGG-------------------------------------------------------------TGGC-------ACAGG---------- s panTro1.chr19_random 218097 76 + 57627672 GGGTACGGCTGGCCGACCTGCCTAAAGC-----CAGGCAT----GGACCCGAGGT---------GCCCACACTG--------------------------------CTTGGAGCTGG-------------------------------------------------------------TGGC-------ACAGG---------- s rn3.chrUn 69939794 185 - 75822765 CACCACGGAGGGTCAA--TGGATGGAGCTCTGGCAGGCACAAAAGGGCCCAGCATCTTTGTCTCACCCATACTGTCTCATAGGACGTTCCTTCTGGAACGTGGCTTCTTTGACCTGGACAGTTACAGCCCCATGGCAGCACTCACTATGCCTTGACCTTGAGGGTCTTTGTGCTTTTAAGGT-------ATGGG---------- s canFam1.chrUn 6340908 83 + 91062872 ----ATGCTCTGTC--CCTGCTCAATGA-----CAAACTG--------CCAAAGT---------TCCAGTGGTG--------------------------------ACGGAGGCTGG-------------------------------------------------------------AGGCGGCTCCAACAGGCCACAAAGGG a score=9312.0 s hg17.chr17_random 993485 17 + 2618010 GCCCGGTGTCCCTTGGA s panTro1.chr19_random 218173 17 + 57627672 GCCCGGTGTCCCTTGGA s mm5.chr11 121409122 17 + 121648857 GCTCCATGTTCCTTGGG s rn3.chrUn 69939984 17 - 75822765 GCTCCATGTTCCTTGGG s canFam1.chrUn 6340991 17 + 91062872 GCCCTGGGGCCCTTGCA a score=22106.0 s hg17.chr17_random 993502 127 + 2618010 GAATCAGATCTGCCTCCATGGACT---CACACCTCCTGTGTAAGTGGCGGGTTGTGTGCGTGGGGTGGTGGGACACCTGGCAGGTGGCAGAGGCG-GCATCCCAG-GGGGTGACTGACTTGCGATTTTTCTT s panTro1.chr19_random 218190 127 + 57627672 GAATCAGATCTGCCTCCATGGACT---CACACCTCCTGTGTAAGTGGCGGGTTGTGTGCGTGGGGCGGCAGGACACCTGGCAGGTGGCAGAGGCG-GCATCCCAG-GGGGTGACTGACTTGCGATTTTTCTT s mm5.chr11 121409139 100 + 121648857 GAATCAGTCCTGTCTAAA---------AACATC---------AATGGTGGACAGTGT--------------GACACTTGCCAGGGTTCAGAGGTTCATATCCTAGTTTGTTGACTAACTTCAGATTTTCCTT s rn3.chrUn 69940001 109 - 75822765 GAATTGGACTTGTCTCTGCAGACTAAAAGCATC---------AGGGGTGGGCAATGC--------------GGCACTCGGCAGGGTTCAGAGGTTCATATTCTAGTTTGTTGAGGAACTTTAGATTTTCCTC a score=23588.0 s hg17.chr17_random 993629 290 + 2618010 CTG---AGTGGGCACCCAGCCTCCTTCGATGCCCTC-GGTGGGGAGAGTGAGGGGCACGAGCTTGGCCCTGGTGC-TCAGACGCTTCTCGGTTCACTCCGGGGCCGCACCCTCAGGCCGCTCCATCTTGGACAAGTCTCTTGGCCTCGCTGGGCCCTGCGCTGTG-CA------G----------------------------CCTCTGCCCTTT----CCTCTCCAGGTTCCTGTTTCAAAGCATCTCTCTGAGGGGCTGGGGTGCCACAGGGGCCACCATATGGGAGGGCGGTAGCCTCACAGGAGCCAGCAGTGGGGCCATTGGGGCCTGG s panTro1.chr19_random 218317 290 + 57627672 CTG---AGTGGGCACCCAGCCTCCTTCGATGCCCTC-GGTGGGGAGAGTGAGGGGCACGAGCTTGGCCCTGGTGC-TCAGACGCTTCTCGGTTCACTCCGGGGCCGCACCCTCAGGCCGCTCCATCTTGGACAAGTCTCTTGGCCTTGCTGGGCCCTGCGCTGTG-CA------G----------------------------CCTCTGCCCTTT----CCTCTCCAGGTTCCTGTTTCAAAGCATCTCTCTGAGGGGCTGGGGTGCCACAGGGGCCACCATATGGGAGGGCGGTGGCCTCACAGGAGCTGGCAGTGGGGCCATCGGGGCCTGG s mm5.chr11 121409239 278 + 121648857 CCTCCCAGTAAGTACC--ACCCTCTGAACTGTCTTCTGGGGGAGATAATTAGAGA---------GGCTTTGGTAAGTCACACAGGACTCTGCTTATACTAGGTAC-CACCCTCAAGCTGTTCCCCTTTGAACAAGTTGACTGGTTTCTCT-GGTCCTCCGTCATG-GA------AGCCAGGAAGTAGATACCTGTTGTATGTCCCCCTTCACTGTATAACTTCTTCTGCTTCCTGT-----------TCTTT---GTGCTAGTGT-------------CCATTTG-------AATGCTTTCATGGGAACCAGATTTAGG--CTCTAAGGCTTGG s rn3.chrUn 69940110 281 - 75822765 TCTCCCAGTGAGCACC--ACCCTCTGAGTTGTCTTCTGGGGGAGATCATCAGAGA---GACCTTGGTTTTGGTAA-TCATACAGGACTCTGCTTATCCTAGGCAC-CACCCTCAAGCTGTTCCTCGTTGGCTGAGTCCTCTGGTTTCTCT-AGTCCTTTGTCATG-GAAGCCAGG------AAGTAGGTACCCATTGTATG--CCCCTCTTCACTGTA-TAACTTCTACTTCCTGT-----------TCTTT---CTGCTAGTGT-------------CCATTTG-------AATGTTTTCATGGGAACCCCAACTTAGG-CTCTGAGACTTGA s canFam1.chrUn 6341199 233 + 91062872 ---CCGGGCGAGCGGCTGGCCTCCTTAAACACTCTC-TATGGGGACAGT----------------ACGTTGGCAA---GGCCGGTCCCCAGCTCGCCGCTAGGCTGCCATTCCAGGCTCTTTAATTTTACACAAGCTGCCTGGCT---CT-GGGCCTCAGTAAAGACA------G----------------------------CTCCTCCTCAGG----GCGCAGCAGCCCCCTGTTGCACCCC---TCCCTTCGCTGCCCCTGC---------------------------ACCTTCCTTTCCACCACCGTCCTTG----CTTGAAGGTGT-- a score=351.0 s hg17.chr17_random 993919 5 + 2618010 CTATG s canFam1.chrUn 6341432 5 + 91062872 CTGTG a score=351.0 s hg17.chr17_random 993919 5 + 2618010 CTATG s canFam1.chrUn 6341432 5 + 91062872 CTGTG a score=2747.0 s hg17.chr17_random 993924 19 + 2618010 GGCAGCTAGGTGGCAGGAG s mm5.chr11 121409517 17 + 121648857 GGCAGGTGGG--GCAGAAG s rn3.chrUn 69940391 17 - 75822765 GGCAGGAGGG--TCAGAAG s canFam1.chrUn 6341437 19 + 91062872 GACGAACGGGGTGCAGAGA a score=168465.0 s hg17.chr17_random 993943 924 + 2618010 GGGCTGAGGGGTCTCTGTGGTTGGGTCTGAGGTGAGGCAGGTTTGAGTTGGGCGG---GACTGGAGGGGAGGGGAGGCGACGCGGGGCCCATGGAGGTGGACTTGGTCCACCGTCACCCCACACCTTCC--TCCAGCACATCCTTCCCGTG------GGTGGAGTCACAGCCCTGAG--------------------------CTTCCTCTCCCTGCAGCCCTGTGGGGGAATCTGTTCTGTGCTCAGGGGACGGTGCCTGGTCCTGGGGGCTGGGCAGAGCTCGGAGGGGCCTGCCCCGGCAGCTTTGGTGGCTCGGGTGCTGCAGAGGC--CGGCAAGGGCTTCGGCTC-----CGAGCTTCGGTGAGATTGAGGCCAGCGGTGCAGCTTG--CAGGACGCT-----GAGGTGCTGTGAGCCCTGGAGGCCGA-CTCCAGACTCTGGCCAGCATCCTGGCAGCTGGGTGACCACAGGCTGTCTCTACAGCAGCCACCACTCCCGACACCACTCTCGGGTCCTCCTGGTATCGAGGGACCTGCTCGGGGTTGCCGTGGAGCTCGGAGCTGCAGGGTGGCT-GAGGCCG-GAGGCTTAAGAC-CCCAGTGTCAGGAGTAAATTAAAGGCGGGTGAAGGATGAGCGTGGATTGTGGGGG-CAGCCAGGAGCCCAGGAC-CTCGAGGCCTCGTGGGGCCGGGCGGCTTTGCTGGCCTCCTGCAGCTGACAGGC-GCCCTGGTGGGCAAACACTGAGAA-ATCGTGATGGGCGTAGAGATGACTGACCAGAACGTGCAGGAAGGAGGTGCTGAGCCTGAGGAAAGGCTCGGACGGGCAAACCGCAGGAGAGCTGG-CCCAGCTCAACTCCAGTCCCACTGCAGCCGGGAGTCCTGGGGTGTCCC----ACGCTGACACCGGGGAGGGAGTCGTCCAGAAAGCAGCACCCACTCAACTGGAG------AGGAGTCTTTCTCCACACATGAGCTGGGGG s panTro1.chr19_random 218725 908 + 57627672 GGGCTGAGGG-TC-CTGTG--TGGGTTTGAG-TGAG-CAGGTT-GAGT-GGGCGGACCGA------GGGAGGG-AGGCGACGCGGG-CCCATGGAG-TGGACT-GGTCCACCGTCACCCCACAC-TTCC--TCCAGCACATCCTTCCCGTG------GGTGGAGTCACAGCCCTGAG--------------------------CTTCCTCTCCCTGCAGCCCTGTGGGGGAATCTGTTCTGTGCTCAGGGGATGGTGCCTGGTCCTGGGGGCTGGGCAGAGCTCGGAGGGGCCTGCCCCGGCAGCTTTGGTGGCTCGAGTGCTGCAGAGGC--CGGCAAGGGCTTCGGCTC-----TGAGCTTCGGTGAGATTGAGGCCAGCGGTGCAACTTG--CAGGACGCT-----GAGGTGCTGTGAGCCCTGGAGGCCGA-CTCCAGACTCTGGCCAGCATCCTGGCAGCTGGGTGACCACAGGCTGTCTCTACAGCAGCCACCACTCCCGACACCACTCTCGGGTCCTCCCGGTATCGAGGGACCTGCTCGGGGTTGCCGTGGAGCTCGGAGCTGCAGGGTGGCT-GAGGCCA-GAGGCTTAAGAC-CCCAGTGTCAGGAGTAAATTAAAGGCGGGTGAAGGATGAGCGTGGGTTGTGGGGG-CAGCCAGGAGCCCAGGAC-CTCGAGGCCTCATGGGGCCGGGCGGCTTTGCTGGCCTCCTGCAGCTGACAGGC-GCCCCGGTGGGCAAACACTGAGAA-ATCGTGATGGGCGTAGAGATGACTGACCAGAACGTGCAGGAAGGAGGTGCTGAGCCTGAGGAAAGGCTTGGATGGGCAAACCGCAGGAGAGCTGG-CCCAGCTCAACTCCAATCCCACTGCAGCCGGGAGTCCTGGGGTGTCCC----ACGCTGACACCGGGGAGGGAGTCGTCCAGAAAGCAGCACCCACTCACCTGGAG------GGGAGTCTTTCTTCACACATGAGCTGGGGG s mm5.chr11 121409535 826 + 121648857 TAGCTGAGGGGTCTGAGTGA-TGGGTCTGAGAAGAAGGAAGTTAGAGT-CAGCGG-----------------G-GAGTAATGTGGAGCCTCCACAA-TGG-CT-AATTTAT-----CCTCTAACCTATC--TACA-CAGGTCTTTT----------------AGTTGCTGCCCTAGGAACCCAGGGTCCAGGATGCCACCAGCCTTCACCTCCCTGTAGTTTTTATGAGACATGT-TTACATGCTTGGGAGACAGCAAA-GGTCT--GTGACCCAGCAGCAGCTGGAAGGGCCTGTCCT-GCAGCTTTGGTAGCTATG--GCTTCAGAGTCTGCAGCGATCCTTTCATCTCTTCAGTGCCCTGCAGCCACAGTGTAGCCAG-AGTATAGCTAG---AGGATG------------GCTAAATCCTCCGGCAGCTG--CCCAGGACTTTA--CAGCACCGTGGCAACTAG----TCTGAGGCTGTCTCCAAGGCAG-CACTGCTCACAAC-CCTCTCCAGCATCCTCATTAGTTTGAGGAACTG--TCTAGGTTGCCCTGGAGCT-GGGGCTGCAAGGCCTCTGGAGGCCA-GGGGCTCAAGGCTTTTGGGGTCAAAAGTAAATTAAAGGCAGGCAAAGAATGAACATGTGGCATGG-------------------------------------------------------GGCCTCCTACCACCAACAGCT-GTCCTGGTGGGCAAATACCAAGGA-AGCTGGA-------ACAGACTGCTGACT--AACGTG-AGAGAGGAGGCACTAAGCCTGAGAAAAA---CAGAGAAGCAAATAGCAGGAATACAGA-CTCTTCT----TCAATGGCCACTGTGGTTGCTAGTGTCTGGTTCTTTCTGGGATTCTCTCACTGGCTGGGAAGCTGTCT---------CATTCTCTAGGGTAGAGATGAGAGTGAGTCTTGTCCCTTTTAAGGGATGGGGG s rn3.chrUn 69940409 829 - 75822765 TAACTGAGGAGTCTGAGTGA-TGGGTCTGAGAAGAGGCAAGTCAGGGT-CGGGGG-------------------GAGTAATGTGGAGTCTCCACAA-TAG-CT-GATTTAT-----CCCCTAGTCTATCCATACAG---GTCTTTTAGTTGCTGCCCTAAGAATCCAGAGTCCAGGA----------------TGCCACTGGCCTTCATCTCCCTGTAGTTTTTATGAGACGTGC-TTACATGCTTGGGAGACAGCAAA-GGTCT--GTGACCCAGCAGCAGCTGGAAGGGCCTGTCCT-GCAGCTTTGGTAGCTATG--GCATCAGAGTCTGCAGCGTCCCTTTCATCTCTTCAGTGCCCTGCAGCTACAGTGTAGCCAG-AGGCCAGCTAG---AGGATG------------GCTAAATCCTCCAGCAGCTG--CCCAGGACTCTA--CAGCACCCTGGCAACAGG----TCTGAGGCTGTCTCCACGGCAG-CACTGCTCCCAAC-CCTCTCCAGCATCCTCATTAGTTTGAGGAACTG--TCTAGGTTGCCCTGGAGCT-GGGGCTGCAAGGCCTCTGGAGGCCAGGGGGCTCACGGCTTTTGGGGTCAAAAGTAAATTAAAGGCAGGCAAAGAATGAACATGTGGCATGG-------------------------------------------------------GGCCTTCAACCACCAACAGCT-GTCCTGGTGGGCAAACACCAAGAA-AGCTAGATAGA---AAAGACTGCTGACT---CTGTG-AGAGAGAAAGCACTAAGCCTGAGAGAAG---CAGAGACACAAATAGCAGGAATAAAGA-CTCTTCT----CCAATGGCCACTGTGGTTGCCAGTGCCTGGTCCTGCCTGGGATTCTCTCACTGGCTGGGAAGCTGTCT---------TATTCAGTAGGGTAGAGATGGGATTGGGTCTTATCCCTTTTAAGAGATGGGGG s canFam1.chrUn 6341456 722 + 91062872 ------GGGCATCTG------TGGG-CTGCTGGCAGCC---TCGGAGC-TGGCCG-------------------GGGTG------------------CGG----GA----------CCTCG-------C--CCCA-----------------------------------CCCTGGG------------------------------AGCTCCACG---------GCGGGCCCGT----TGCGCTCGGGGCACA--------TCT-------------------GGCGAGGCT-------GCA------------CGGATGCTGCAGAGCCGGCC-CAGGGGCTCCGTC-------CAGACTTCTGTGCCAACAAGGC----AGTTTAGCAAAAGCAGGATATTTCCAGACGGTGC--GAACCTCCTGTGGCCGACCCCAGGACCCTGCCCGGTGCCGTGGTAACTGGGTGACCACGGGCTGTCTCCACGGCAGCGGCCCCTCCTGATGACACTCCAGAGTCCTCATTAGTTTGAGGGACCTGTTTGGGGTTGCCCTGGAGCT-GGACCCGCAGGGCGGCT-GAGGCCA-GAGACTTCAGACTCCTGATGTCAGAAGTAAATTAAAGGC-GGTGAAGAATGAGTGTGCGATGCAGGGGCCAGCGGGGACCCCTGGATGATGGTGGCCTCACGGGGCCAGGCGGCTTTGTTAGCCTCTTACAGCTGACAGGCAGCCCCAGTGGGCAAACACCACGAAGATTGTGACGGGGAAGAGGATTGTTGACCAAACAG---GAAGAAAAGGCGGCAAGCCTGAGAAAAGGCTTCGGAGGGCAAACAGCAGGCCAGCTGACCCCAGCTCTGCTCGGGCCC--------------GGGCCGGGGGCTTCC---------CACGCTGGCT-GGAAACCGCAC---------CGCTCGCCCTCCGGG--------GTGGGCACTGCCTC---------CTGCGGG a score=590.0 s hg17.chr17_random 994867 12 + 2618010 TGGCCACCGGCC- s panTro1.chr19_random 219633 12 + 57627672 TGGCCACCGGCC- s mm5.chr11 121410385 12 + 121648857 TGACTGCCTAAC- s canFam1.chrUn 6342178 12 + 91062872 -AGCTCCCTGGTC a score=99649.0 s hg17.chr17_random 994879 407 + 2618010 CTGTCGTCCT-CAGAGACTCATGGC-CCGTCCGCCCAGCCACACATCCCTCTGTCCAGCGTGCTCGGGCA----GCAGGCACTGTCGCTGGAGTGTCATGGCCACCCCAGGGCTTAATTTGGAGGTGCCAGATTTGATGGTCATCAGCCTGGGTAGGATTGAGGGCTTGTCCCAGACAGTCAGGAGACAAGCTGGGAGAACATCACTGGAGACAGATAATAAAGGCACTGACAAGCCCTGCGTTGACATGAGGTGCTGTCTGGAAAAGGCTGAGCCTGGTGGGGAATGGGTCCCCTGGAACGCGGGCCTGGACTT-GGAGGACAGACGTAAAGCATTTGAAGGTCTCAGGGTGACGTTGAAGGGGCAGCAAAGAGAAACTGAAGACTGAGCTTTCAGAAGCTAGCTCACCAAAC s panTro1.chr19_random 219645 405 + 57627672 CTGTCGTCCT-CAGAGACTCATGGC-CCATCCGCCCTGCCACACATCCCTCTGTCCAGCGTGCTCGGGCA----GCAGGCACTGTTGCTG--GTGTCATGGCCACCCCAGGGCTTAATTTGGAGGTGCCAGATTTGATGGTCATCAGCCTGGGCAGGATTGAGGGCTTGTCCCAGACAGTCAGGAGACAAGCTGGGAGAACATCACTGGTGACAGATAATAAAGGCACTGACAAGGCCTGCGTCGACATGAGGTGCTGTCTGGAAAAGGCTGAGCCTGGTGGGGAATGGGTCCCCTGGAACGCGGGCCTGGACTT-GGAGGACAGACATAAAGCATTTGAAGGTCACAGGGTGACGTTGAAGGGGCAGCAAAGAGAAACTGAAGACTGAGCTTTCAGAAGCTAGCTCACCAAAC s mm5.chr11 121410397 364 + 121648857 TGGCATTCCG-TACAGACTGTTGTCACTATTCACCCATCTCTACTTCCATTCATTATAC---CTTAGGGACCACGTAAGCTCTGAATCTGG-GTATCACAGTCATGCTTAGGGTTAATTCCAGGGTGTCAGATTTAGTGAGTGTCTTTCTGGGAAAGACTGAGTGTTCGTCCCAGAGGGACATGAGATAGGC-AGGAGAGTGTCACTGGAGATGATCAGTAGAGGCACTGAGAAGGCCCACAAAGATCTGAGCTTTTGTCTAGAAAAGACTAAATCTGT----------------------------------------GGGCAGATATGAAGGA--TGAGGCCCATAGTTCACTGCTGAAGGAT--GCAAAGAGAAATTTGGTACCCACTATCTAGAAATCAGATCACCAAGC s rn3.chrUn 69941273 355 - 75822765 CTGTTATCCTGTCGAGACTGTTGTCACTATCTACCCATATCTACTCTCATTCATTATAC---CTTAGGGGCCAGATAAGCTCTGTATTTGG-GTATCACAGTCATGCTTGGGGTTAATTCCAGGGTGTCAGATTTAGTGAGTATCTTTCTGGGAAAGACTGAGGTTTTGCCCC-----------------------AGAGTGTCACCGGAGATGATCAGTAGAGGCACCGAGAAGGCCCACAAAGACCTGAGTTCTCATCTAGAAAAGACTAAATCTGT-GGGCAGTGGGTACCCTG---------------------------GATACAAAGGA--TGAAGCCCACAGTTCACTGCTGAAGGAT--GCAAAGAGAAATCTGGTACCCAACATCTGGAAACCAGATCATCAAGC s canFam1.chrUn 6342190 353 + 91062872 -------CTG-CAGCGGC--------CCCTCCGCCCG---------CCGCCTGCCTCAGGGGAT--GGCATCCAGCGGGCACTCTGTCCAGGGGGCCACAGCCGTCCCCGGGGGTAGCTC----------------ATGGTCATCACCCGGGGCAGGACTGAGGGCTTGCCCCAGA-------AGGACAGGCCGGGAGAATGTGAACACAGATAAATGGTAAAGGCCCTGCGAAGGCCTGCGCAGACACGGGGCGCCGG-GGGGACGGGCTTAGTCCGG-------TGGGTCTTCTGCAATGACGGCCTAGACCTGGGAGATCGGAGCCAAAGCATCTGAAGGTCATGGGATGATGCCCAAGGAG--TGACAGCGGGACTTGGCACCGCA-GCCTGGACACTCGCTCGCTAAGC a score=3873.0 s hg17.chr17_random 995286 10 + 2618010 AGGGAGGCCA s panTro1.chr19_random 220050 10 + 57627672 GGGGAGGCCA s mm5.chr11 121410761 10 + 121648857 AGAGAAGTCA s rn3.chrUn 69941628 10 - 75822765 AGAGAAGTCA a score=20906.0 s hg17.chr17_random 995296 223 + 2618010 GGTCCGGTTGCCCCGCAGGCAGTGGCAGATCCCAGCTTTTCGTGTTTTGTCCTAGTGCCCAAGGTCTAGGAGATGGttttattttatttttagtttttgaaaaatagagatggggtctatgttgcccaggctggtgtggaactcgtggcctcagcggatcctcctgccttggcctcccgcagtgctgagCCACCAGGCCTAGCTGATTCTGTAAGCCACGCAG s panTro1.chr19_random 220060 223 + 57627672 GGTCCGGTTGCCCCGCAGGCAGTGGCAGATCCCAGCTTTTCATGTTTTGTCCTAGTGCCCAAGGTCTGGGAGATGGTTTTAttttatttttagtttttgaaaaatagagatggggtctatgttgcccaggctggtgtggaactcgtggcctcagcggatcctcctgccttggcctcccgcagtgctgagccaccatgcctagcTGATTCTGTAAGCCACGCAG a score=26356.0 s hg17.chr17_random 995519 259 + 2618010 GTGAATAATTCTGCAGCTCACAGCGTGGGTGGTTGTCTCTCCGGCAACCTGACCCGCAAAGGACACAACCGCAGGAGAGAGGTCAAGAGGCCCCTGCCTGCGGGTGTTAGGAGGTGTCAT-----CTTAACATCCATGTTCA-TGGAAGACGTGTGCCTTCAATGGAAACTGTCCGTCGTCTGGGTCAAAGTTGGCTACAAAAACCTTCTGGGGGCTTCCTGGTCGGAGTCAACGTTTA--CCATATAGAA-TGCGGGCTTCTGGGCA s panTro1.chr19_random 220283 259 + 57627672 GTGAATAATTCTGCAGCTCACAGCGTGGGTGGTTGTCTCTCCGGCAACCTGACCCGCAAAGGACACAACCGCAGGAGAGAGGTCAAGAGGCCCCTGCCTGCGGGTGTTAGGAGGTGTCAT-----CTTAACATCCATGTTCA-TGGAAGACGTGTGCCTTCAATGGAAACTGTCCGTCGTCTGGGTCAAAGTTGGCTACAAAAACCTTCTGGGGGCTTCCTGGTCGGAGTCAACGTTTA--CCATATAGAA-TGCGGGCTTCTGGGCA s danRer1.chrNA 208735274 229 + 390413307 GTGGCCTCTACTGCAAGTC-CAGGGAGAGTTGTGGACCCCTGGGTAGCTTGCC-------------------------GGGGTC-AGAGGCTCCTAGGTATAGG-GCCAGGAGGTACCCTAGGGCCTCGAC-TGCAAGTCCAGTGAGAGAGGTGGACCCCTG--------TGTAGCTTGTTGGGGTCAGAGGCCCCTAGTTGGAGGGCCAGGGGGCACCCTGG--GGACTCTACTGTAAGTCCAGGGAGAGTTGTGGACCCCTGGGTA a score=75229.0 s hg17.chr17_random 995778 815 + 2618010 TAAGGACAGCCTAGAAATCTCTCTGTTATATAGACATTTTCCTTTTTAGAATTTGACCTTGATGTGCAAAGGAAA---------TAAGTATACTATTGAGGTATTATTATTTGGTCCACAGTTTTGGAAGCCTCCCA--TGTGTGCACTGTGGTCGGGGTTGTGTGTATGACACACCCGCTTGGCCCCCAAAGAGCTTGCCGTCTGCTTCCTCATTACCGTACACCAAACAAAGGCCTTGGACATATTGCTGTACGTgttctatgtgcacataaacttggaactgaacacaaccaaacaggttgcttacctgcaggactgtcagaaactttaatgagcaaatgttcattgtgcatctccTTAGGCAACAGGGACCTTGGGCTGGGACAGGCTGTGGGGTCTTGGATACCTGGCAtgatggtttaaagtatatctgctactttgacagccctccttccaaaaggtagagcccggttcctctcccctgaacgcgggctgtgcctccggacctgcctttagtgagtaggatatggtgggagtgatgctctgagactccccaggtgaggtcagaaaaggatggcttctgcctggtgcactctcttgtcattcactttgggggagcagctgccctgttgcagggcctgtaagcagcctgtgaggctcaccctgtggggaactgaagcctccccagccttgagagggggctaccgtcgacctacctctcgactgcaacctcacagcagaccccaaacaggctcagctgagcagcgccaaacccctgagccaaagaccttgaggataatcaacgttcactgttgtgggagtca s panTro1.chr19_random 220542 826 + 57627672 TAAGGACAGCCTAGAAATCTCTCTGTTATATAGACATTTTCCTTTTTAGAATTTGACCTTGATGTGCAAAGGAAATAAGTATACTAAGTATACTATTGAGGTGTTATTATTTGGTCCACAGTTTTGGAAGCCTCCCATGTGTGTGCACTGTGGTCGGGGTTGTGTGTATGACACACCCGCTTGGCCCCCAAAGAGCTTGCCGTCTGCTTCCTCATTACCGTACACCGAACAAAGGCCTTGGACATATTGCTGTACGTgttctatgtgcacataaacttggaactgaacacaaccaaacaggtttcttacctgcaggactgtcagaaactttaatgagcaaatgttcattgtgcatctccTTAGGCAACAGGGACCTTGGGCTGGGACAGGCTGTGGGGTCTTGGATACCTGGCAtgatggtttaaagtatatctgctactttgacagccctccttccaaaaggtagagcccagttcctctcccctgaacgcgggctgtgcctccagacctgcctttagtgagtaggatatggttggagtgatgctctgagactccccaggtgaggtcagaaaaggatggcttctgcctggtgcactctcttgtcattcactttgggggagcagctgccctgttgcagggcctgtaagcagcctgtgaggctcaccctgtggggaactgaagcctccccagccttgagagggggctaccgtcgacctacctctcgactgcaacctcacagcagaccccaaacaagctcagctgagcagcgtcaaacccctgagccaaagaccttgaggataatcaacgttcactgttGTGTGGGTCA a score=85.0 s hg17.chr17_random 997126 201 + 2618010 ACTGGCAGCAGAAAGGCACTTTTGTAAGAAGAGGGATGGGAGAAGCACAGAGGTGGACCTGGAAAAGTCAAAGGGAAGCTGTGGGTGGAAGCTCCGGATGGCTGACCCCGAGTTCCAGCTCAAAGAACAGAGATGGGTGGGGTGGGAAACACAGCGGAAAGAGCGGCCCGTGAACGAGGGTCCTCGGCAGCAGGACCGCCC s danRer1.chrNA 208736518 173 + 390413307 ACTGGGATCAGAAA------CCCCTAGGTGGAGGGCCAGGGGTCACCCTGGGGCCTATACTGCAA-GTCCAGGGGAAGAGGTGG-----ACCCCTGGGTAGCTTGCTGGGGTCACTAGCCCC-------TAGGTGGATGGCAAGGGGG-CACCCTGG-------GGCCTAT-ACTGCAAGTCCAGGGAGAGAGGTGGACCC a score=6750.0 s hg17.chr17_random 998493 203 + 2618010 tttcctcaatgaagctgtttgaaaaaGAAAAAGGGAAAGAGAGGAAGAGAGAGAGGTGCCAGTTGGGGAGGAAAAGAGGAAGAGGAACC--TTGTAGAG-CAGAGTGCAGGTAGAACTGCAACTGAAAACAGGAACCTGCGGTGCAAACGGCACAGCGtgcaccgtgctgcctgtgcgctcccctgtgcgctcccctgtgcgctgc s canFam1.chrUn 6342847 182 + 91062872 TTCCGTCCATGGAGCCGTTTGAAAA-----------------GGAAGAGGGGCATATGTCAAAAGGGAAGGAAAAGAGGAAGAGGAAGCGTTTGCAGAATCAGAGTCCAGGTAGAACCACAACCGAAAACAGGAACATGGGACACAAGTAGCCGGGGGTGCA-------GGTGGGCCGTCCCCCCACGCAGCCCCCTCTGCGCGGC a score=920.0 s hg17.chr17_random 998809 149 + 2618010 CCTGCAGGTGAGCCGTCGTGGCTGGAAGCAATTTCACTTTCGTGTGTCAGGACAGAGGAAAAGACGAATTTTGCATGAAGCGCAGGTCTGGGGCTTTTCCTCCCAGTTGGTAAAAAGGAGCTGACAGAGAGGCTGCGTGTTGGTGTGAG s danRer1.chrNA 208736872 117 + 390413307 CCCCTGGGTAGCTTGCTGGGGTCAGAAGC--------CTCTACGTGGAGGGCCAGGGGGCAC------------------------CCTGGGGCCTATACTGCAAGTCAGGGGAGAGGAGTGGACCTCTGGGTAGCTTGCTGGGGTCAG a score=3718.0 s hg17.chr17_random 999298 448 + 2618010 GAGTCCAGATCGTAGATTATTTTGGATCCCGTGTCCCGGAGAGCCCAGATCGTAGATTATTTTGGACCCGCTGTCCCGGAGAGTCCAGATCGTAGATTATTTTGGACCTGCTGTCCCGGAGAGCCCAGATCGTAGATTATCTTGGATCCCGTGTCCCGGAGAGCCCAGATCGTAGATTATTTTGGACCCGCTGTCCCGGAGAGTCCAGATCGTAGATTATTTTGGACCTGCTGTCCCGGAGAGCCCAGATGGTAGATTATTTTGGATCCCGTGTCCCGGAGAGCCCAGGTGGTAGATTATTTTGGACCTGCTGTCCCGGAGAGCCCAGATCGTAGATTATTTTGGACCCGCTGTCCCGGAGAGCCCAGGTGGTAGATTATTTTGGATCCCGTGTCCCGGAGAGTCCAGGTCGTAGATTATTTTGGATCCCGTGTCCCGGAGAGTCCAG s mm5.chr18 13086111 448 + 91083707 GAATCTAGCCTGTCTGTCTGTGTGAAGTCGGTAACCAGGAAAATTGAGCATGTCTGTCTGTGTGAAGTCGGTAACCAGGAGAGTCCAGCATGTCTGTCTGTGTGAAGTCGGTAACTAGGAGAGTCCAGCATGTCTGTCTGTGTGAAATCTGTAACTATAGGAATCCAGCCTGTCTGTCTGTGTGAAGTCGGTAACCAGGAAAATTGAGCATGTCTGTCTGTGTGAAGTCAGTAACTAGGAGAACCCAGCATGTCTGTCTGTGTGAAGTCGGTAACTAGGAGAACCCAGCATGTCTGTCTGTGTGAAGTCGGTAACTAGGAGAACCCAGCATGTCTGTCTGTGTGAAGTCAGTAACTAGGAGAACCCAGCATGTCTGTCTGTGTGAAGTCGGTAACTAGGAGAGTCCAGCATGTCTGTCTGTGTGAAGTCGGTAACTAGGAGAACCCAG a score=1079.0 s hg17.chr17_random 1002170 494 + 2618010 TGTGAGACGATGAAACGAACGAGA-----AGACGGCCTAATGTGGTGCAGAAGAAACGCTGTGAGGAAGCTGGGGAGGAGCGTGGGGGCTGTGATGT---------TAGAGGGGTGGCCTCACTGAGAAAGCACAGCACACGCTTTAGGGGTGGGGTTCCAGCCAAGAAGCCGCACAGCAGAGGCCATGGCTGGGACTGGAGCTGCTATGGC----CCAAGGGGAATGGGGAGGAGGCCCCCCAGCC--CTGGTTGGTGCTGGGAGACTGTGGACCAGGTGGGTTGGACATGGAGCCCCTGGAGGGCTC--------------GGGCAGCCGTGGCACCATCTGGGGGCTTGTTGGGGGCACAGGGAGACCTGTTGACCGGGCCCCGCCAGGGACCAGGC-AGAGCTTATGCTGCTGGGCTGGGGCTGGCCTTGGAGAGCTTG-TGTGTGTGGAGCAAGCCTGTGCCTCAGTCCGTTCAAAGGAGCCCGAGAAAGAGGAGCATCCCCCGGATGGGGCCCATGAAGCTCCT s danRer1.chrNA 154828229 466 - 390413307 TGCAAGTCTAGGAAGAGAGGTGGACCCCTGGGTAGCTTGCTGGGGT-CAGAGGCCCCTAGGTT-GATGGCCTGGAAGCTTCGTGGGGCCTATACTGCAAGTCCAGGGAGAGAGGTGGACCCATGGGTAGCTTAC-----------------TGGGGTC-------AGAGGCCCCTAGGTGGAGGGCCAGGGGCACCCTGGGGCCTCTACTGCAAGTCCAGGGAGA-----GAGGTGGACCCCTGGGTAGCTTGCTGGTGTCAGAGGC-----AACGAGGTGGA-GGGACAGGGGGTACCCTGGGGCCTCTACTGCAATTCCAGGGAGAGAGGTGG-ACCCCTTGGTGGCTTGCTGGGGTCA----GAGACCCCTAGGTGGAG---GGCCAGGGGGCACCCTGGGGCCTCTACTGCAAGTCTAGGG--------AGAGAGGTGGACCCATGGGTAGCTAGCTGGGGTAAGAGGCCCCTAAGCGGAGGGCCAG-----GAGGCACCC------TGGGGCCTCTAATGCAAGT a score=1598.0 s hg17.chr17_random 1002664 30 + 2618010 CCCTGGGAAGCAGCCTGAGGGCACCCCTGG s fr1.chrUn 43218845 30 - 349519338 CCTTGGGACCCTGTCTGAGCGCGTCCCTAA s danRer1.chrNA 154828695 24 - 390413307 -CCAGGGAGAGAG-----GTGGACCCCTGG a score=0.0 s hg17.chr17_random 1002694 10 + 2618010 CCCAGGGGCT a score=446.0 s hg17.chr17_random 1002694 8 + 2618010 CCCAGGGG s fr1.chrUn 43218875 8 - 349519338 CCCTAGGG a score=393.0 s hg17.chr17_random 1002702 2 + 2618010 ---CT s panTro1.chr19_random 55090855 2 - 57627672 ---CT s fr1.chrUn 43218883 5 - 349519338 ACCCT a score=7427.0 s hg17.chr17_random 1002704 231 + 2618010 GAGTCCTGACGGCGTCTGCAACCTCTGGGCTGTGGTC--------TCCCTGAGCC-------------CTGATGGCATCTGCAACCTCTGGG----CTGTGGTCTCCCCAGT--CCTGACGGCGTCTGCATCCTCTGGGCT--------GTGGTCTCCCTGAGTCCTGACGGCGTCTGCAACCTCTGGGC----TGTGGTCTCCCTGAG-----------------------------------------TCCTGATGGCGTCTGCAACCTCTGGGCT--------GTGGTCTCCCTGAGTCCTGATGGCGTCTGCAAC s panTro1.chr19_random 55090857 271 - 57627672 GAGCCCTAACGGCATCTGCAACCTCTGGGCTGTGGTC--------TCCCC-AGTC-------------CTGACGGCATCTGCAACCTCTGGG----CTGTGGTCTCCCCAGT--CCTGACGGCGTCTGCATCCTCTGGGCT--------GTGGTCTCCCTGAGTCCTGACGGCATCTACAACCTCTGGGC----TGTGGTCTCCCTGAGCCCTGACGGCGTCTGCAACCTCTGGACTGTGGTCTCCCCAGTCCTGATGGCGTCTGCAACCTCTGGGCT--------GTGGTCTCCCTGAGCCCTGATGGCGTCTGCAAC s fr1.chrUn 43218888 205 - 349519338 G---TCTGAGCGCGTCCCTAACCCTTGGGACCCTGTCTGAGCGCGTCCCT-AACCCTAGGGACCCTGTCTGAGCGCGTCCCTAACCCTAGGG-------------ACCCTGT---CTGAGCGCGTCCCTAACCCTTGGGA----------------CCCTG---TCTGAGCGCGTCCCTAACCCTAGGGA------------CCCTG--------------------------------------------TCTGAGCGCGTCCCTAACCCTTGGGA----------------CCCTG---TCTGAGCGCGTCCCTAAC s danRer1.chrNA 154828719 251 - 390413307 GTAGTTTGCTGGGGTCAGAGGCCCCTAGGCGGAGGGACAGGGGGCTTCCTGGGGC-------------CT-----CTACTGCAAGTCCAGGGAGAAAGGTGGACCCCTGGGTAGCTTGCTTGGGTCAGAGGCCCCTAGGTGAAAGTCAAGGGGGCACCCTGGGGCCTATC-----CTGCAAGTCCATGGAGAGAGGTGGAC-CCCTGGGTAG---------------------------------------TTTGCTGGGGTACGAGGCCCCTAGGTGGAGGGCGAGGGGGCACCCTGGGGCCT-----CTACTGCAAG a score=8808.0 s hg17.chr17_random 1002935 67 + 2618010 CTCTGGGC-----TGTGGTCTCCCTGAGT--CCTGA-------TGGCGTCTGCAACCTCT-GGGCTGTGGTCTCCGGGAGCC s panTro1.chr19_random 55091128 67 - 57627672 CTCTGGGC-----TGTGGTCTCCCTGAGT--CCTGA-------CAGCGTCTGCAACCTCT-GGGCTGTGGTCTCCCTGAGTC s fr1.chrUn 43228697 75 - 349519338 CTCTGGGG-----CCGGGTCTCCCTGAGG--CCGGGGCCTCTCTGGGGCCAGGCCTCTCTGGGGCCGGGGCCTCCCTGGGGC s danRer1.chrNA 154828970 72 - 390413307 -TCCAGGGAGAAAGGTGGAC-CCCTGGGTAGCTTGC-------TGGGGTCAGAGGCCTCT-AGGAGGAGGGCCACGGGTACC a score=43564.0 s hg17.chr17_random 1003002 464 + 2618010 TTGACGGCATCT--------GCAACCTCT---GGGCTGTGGTCTCCCT------GAGCCCTGATGGCGTCTGCAACCTCTG---GGCTGTGGTCTCCCTGAGTCCTGA------TGGCGTCTGCAACCTCT---GGGCTGTGGTCTCCGGGAGCCTTGACGGTGTCTGCAACCTCTGGGCTGTGGTCTCCCTGAGTCCTGA------CAGCGTCTGCAACCTCT---GGGCTGTGGTCTCCCC-------AGTCCTGACGGTGTCTGCATCCTCTG---GGCTGTGGTCTCCCTGAGTCCTGACGGCGTCTGCAACCTCTGGGCTGTGGTCTCCGGGAGCCCTGACGGCGTCTGCAACCTCT-GGGCTGTGGTCTCTGGGAGCCCTGACGGCATCTGCAA-----------------------------------------CCTCT---GGGCTGTGGTCTCCGGGAGCCCTGACGGCATCTGCAACCTCTGGGCTGTGGTCTCCCTGAGCCCTGACGGCATCTGCAA--------CCTCT---GGGCTGTGGTCTCCCCGAGCCCTG s panTro1.chr19_random 55091195 505 - 57627672 CTGATGGCATCT--------GCAACCTTT---GGGCTGTGGTCTCCCT------GAGTCCTGACGGCATCTACAACCTCTG---GGCTGTGGTCTCCCTGAGTCCTGA------CGGCGTCTGCATCCTCT---GGGCTGTGGTCTCCCTGAGTCCTGACGGCATCTACAACCTCTGGGCTGTGGTCTCCCTGAGCCCTGA------CGGCGTCTGCAACCTCT---GGACTGTGGTCTCCCC-------AGTCCTGACGGCGTCTGCAACCTCTG---GGCTGTGGTCTCCCTGAGCCCTGACGGCGTCTGCAACCTCTGGGCTGTGGTCTCCCTGAGCCCTGACGGCGTCTGCAACCTCT-GGGCTGTGGTCTCCCTGAGCCCTGACGGCATCTGCAACCTCTGGGCTGTGGTCTCCCCAGTCCTGACGGCGTCTGCATCCTCT---GGGCTGTGGTCTCCCTGAGTCCTGACAGCGTCTGCAACCTCTGGGCTGTGGTCTCCCTAAGTCCTGACGGCATCTACAA--------CCTCT---GGGCTGTGGTCTCCCTGAGCCCTG s fr1.chrUn 43228772 496 - 349519338 CGG--GGCCTCTCTGGGGCCGGGGCCTCTCTGGGGCCGGGTCCTCCCTGGGGCCGGGTCCTCCCTGAGGCCGGGGCCTCCGTGAGGCCGTGTCCTCTCTGGGGCCGGAGCCTCTCTGAGGCCGGGTCCTCTCTGGGGCCGGGTCCTCCGTGAG----GACGGGGCCT----CCGTGAGGCCGGGTCCTCTCTGGGGCTGGAGCCTCTCTGGGGCCGGGGCCTCTCTGGGGCCGGGGCCTCCCTGAGGCCGGGGCCTCCCTGAGGCCGGGTCCTCCGTGAGGCCGGGGCCTCTCTGAGGCCGGGTCCTCTCTG--------GGGCCGGGTCCTCCGTGAG----GCCGGGGCCT-----CTCTGGGGCCGGAGCCTCTCTGAGGCCGGGTCCTCTCTG--------GGGCCGGGG---------------------------CCTTTCTGGGGCCGGGGCCTCTCTGGGGCCGGGT--------CCTCCCTGAGGCCGGGTCCTCCCTGAGGCCGG--GGCCTCCGTGAGGCCGTGTCCTCTCTGGGGCCGGAGCCTCTCTGAGGCCGG a score=-16.0 s hg17.chr17_random 1003466 210 + 2618010 GCAACCCCTATCCCTCTCCGCTCTCCTTCGGGCACACAGCCCGGCATCTCTGCTCTCCAAGGGCTCGTAGTGCCTGAAGCC-GACACTCTCTCTCCTGCACACACACAGGTCGATGCCTTCTTG----TTCCCAGTGCTTCAGAACAGAGCTGGCAGCGGCTGCGGCAGGAGCAGCTCCCACTGACAGGCTCCTGCA----------GCCTCCTTCCCACCTGCA s fr1.chrUn 43229268 187 - 349519338 GT--CCTCTCTGGGGCCGGGTCCTCCGTGAGGC------CGGGGCCTCTCTGGGGCCCGGGGCCTC------CCTGAGGACGGAGACTCTCT--------------GGGGCTGGGGCCTCCCTGAGGCCTGCTGGTGAGGGGGACCAGCCCTGGACCCTGCT----------CACCACCTGCTGACGGGCGTTTGAAGGTGCTGTGCGCTGCCTCCTCTCCTGTA a score=5537.0 s hg17.chr17_random 1003698 255 + 2618010 TCTGTAAGGAGCTAGAGCAGCTCTTTGGCATCCTGTACAGGCCTTGGAATGCTTCAGGGAAAAAAGATGATTCCGCATCAGAATGGCTGTGGTCAGAC---TTGCTGGCAGAAGCCTCCCCCAGGCTCTTGACATGTGGCTTCTGGTCCCTTTTCCTGCCACACCCCTGGGTTCCGCGCAGACCTGGGTCCTTGAAGAACTGAAATTCTAGCTCAACCTCGGCAACTCTGTAGCCATTCGCTGGAAATTTCCTAAGAG s canFam1.chrUn 6344261 211 + 91062872 TCTGCAGGAGGCTGTGG--GCGCTTCGGCTTTCTGAACAGGCCCCGGG--GATTCAG--CAAAGAGGCGACTTCACATCGCAACGACTGCGGTCACACCACTCGCTAGCAGACGTCACCCCT-----------------------GCCGCTCTTCCTGCCGCGCCCCTGGCTTCTGGGCAG-CCCGGGACCTTGTGGAACAGCATGTC----------------GCCCTGCGGCC-CGAGCTGGAAACTTGCTGAGGG a score=35679.0 s hg17.chr17_random 1053962 463 + 2618010 GTGTGAGTTCATGGGTGTGACGGGGTGTGTTCTGTGTGAGAACATGTGTGTAGTGTCCACATGTCCTCTG-TGCGTGAGTCCCTGTGT-GTGATG---TTGTGTTCTGGGTGTGAGTTCATGGGTGTGACGGGGCGTG--CTGTGTGAGAACGTGTGTGTAGTGTTCCCATGTCCTCTGTGCATGAGTCCCtgtgtgtgatgt-tgtgttctgggtgtgagttcatgggtgtgacggggcgtgtgctgtgtgagaacatgtgtgtagtgtccacatgtcctctgtgcgtgagtccctgtgtgtgatgttgtgttctgggtgtgagttcatgggtgtgacggggcgtgtgctgtgtgagaacatgtgtgtagtgtCCACATGTCCTCTGTGCGTGAGTCCCTGTGTGTGATGT-TGTGTTCTCGGTGTGAGTTCATGGGTGTGACGGGGCGTGTGCTGTGTGAGAACATGTGT s panTro1.chrUn_random 236838439 467 - 240967748 gtgtgagttcatgggtatgactgggtgtgtgctgtgtgagaacatgtgtgtagtgtTCACATGTCCTCTGATGCGTGAGTCCGTATGTTGTGATGCCCTCGTGTTCTCGGTGTGAGTTCATGGGTGTGACAGGGTGTGTGCTGTGTGAGAACATGTGTGTAGTGTTCATATGTCCTCTGTGCGTGAGTCCCTATGTGTGATGCCTGTGTTCTCGGTGTGAGTTCATGGGTGTGACAGGgtgtgtgctgtgtgagaacatgtgtgtagtgttcatatgtcctctgtgcgtg--tccctatgtgtgatgt---gttctcggtgtgagttcatgtgtgtgacggggtgtgtgctgtgtgagaacatgtgtgtagtgttcatatgtcctctgtgcgtgagtccctatgtgtgatgcctgtgtTCTCGGTGTGAGTTCATGGGTGTGACGGGGTGTGTGCTGTGTGAGAACATGTGT a score=20359.0 s hg17.chr17_random 1054425 155 + 2618010 GTAGTGTCCACATGTCCTCTGTGCGTGAGTCCCTGTGTGTGATG----TTGTGTTCTCGGTGTGAGTTCATGGGTGTGACGGGGCGTGTGCTGTGTGAGAACATGTGTGTAGTGTCCACATGCCCTCtgtgcgtgagtccctgtgtgtgatgcctgtgt s panTro1.chrUn_random 236838906 156 - 240967748 GTAGTGTTCACATGTCCTCTGTGCATGAGTCCCTATGTGTGATG---CCTGTGTTCTCGGTGTGAGTTCATGGGTGTGACGGGGTGTGTGCTGTGTGAGAACATGTGTGTAGTGTTCATATGTCCTCTGTGCGTGAGTCCCTATGTGTGATGCCTGTGT s mm5.chr11 169663 145 - 121648857 GCAGTGTCCACTAGGCCTCCGTATGTGAG--AATGTGTGTGATGTGGTATGTCTTCAATGTGTGAGCATATGCCCATGATGTGATATGTTCTGTGTATAAACACATGTG------CCAGAT---TTCTCTGCATGTATCTCT---TGCCATGCATGTGT a score=1719.0 s hg17.chr17_random 1054580 18 + 2618010 tctcggtgtgagttcatg s panTro1.chrUn_random 236839062 18 - 240967748 TCTCGGTGTGAGTTCATG a score=2092.0 s hg17.chr17_random 1054637 22 + 2618010 gggtatgatgtgggtatgttct s panTro1.chrUn_random 236841809 22 - 240967748 GGGTATGATGTGGGTATGTTCT a score=6328.0 s hg17.chr17_random 1054659 47 + 2618010 ctctgtgggtgaaaacgt--gtgtgatgtggt---tctt-----tgtgaatctctgt s panTro1.chrUn_random 236841831 48 - 240967748 CTCTGTGGGTGAAA-Cgtctgtgtgatgtggt---tctt-----tgtgaatctctgt s mm5.chr11 169679 55 - 121648857 CTCCGTATGTGAGAATGT--GTGTGATGTGGTATGTCTTCAATGTGTGAGCATATGC a score=34067.0 s hg17.chr17_random 1054706 256 + 2618010 gtgtgacgtggtgtgttctc--tgtgtgagtctgtgtgtctggtgagtgtgtctg-ggtgtgtctggg---tatgtgcgtgctgtgtgtctgtagtatgtgtTC---CTGTGTCTCTCTAAGCTGGT-AGCTTCATCTCTTCCATGTTCTCTGACATTCAGAGGAATTTTCTCACAAATGTGTCCACAACATGGCTGTGTGCCATTTCTCCTGCTT-TGGGGAGCACCAGTGTCTGCAGAGAGAAACGTCCCTGCTCCTGCCCCTGC s panTro1.chrUn_random 236841879 256 - 240967748 gtgtgacgtggtgtgttctc--tgtgtgagtctgtgtgtctggtgagtgtgtctg-ggtgtgtctggg---tatgtgcgtgctgtgtgtctgtagtttgtgttc---ctgtgtCTCTCTAAGCTGGT-AGCTTCATCTCTTCCATGTTCTCTGACATTCAGAGGAATTTTCTCACAAATGTGTCCACAACATGGCTGTATGCCATTTCTCCTGCTC-TGGGGAGCACCAGTGTCTGCAGAGAGAAACGTCCCTGCTCCTACCCCTGC s mm5.chr11 169734 212 - 121648857 CCATGATGTGATATGTTCTG--TGTATAAACACATGTGCCAG----ATTTCTCTG-CATGTATCT------------CTTGCCATGCATGTGTCAGGTATGATCTCTCTGTGTCCT---------GT-GGTTATGT-------GTATTTTCGAATATTTCGACAAACTTCCTCTCATCTGT----ACAATGTAGCTGCAAGCCACTT-------TA-TGAGGAGCAACAGTGTCTGCTCAGTGAAGTGCCCCAAACCCTG------- s canFam1.chrUn 84677283 250 - 91062872 GTGTGCTGTGCAGAGACCCCAGCGTGTCTGTGTACGCGCCATGAGCGTGCGCCTGCGGAGTGTGCGTGCCCCACGTGCGTGTAGTGC-CCTGGAGCGCGTGTG----GTGTGTCCTTGTGAGCCTATAAGTTTCATCTCTTCC----TCTAACACACTCAGACGAACTGTCTCACGAATGTGTCCACAAGATGG-----AACCACGTCTCCTGCTCAAGGAGAGCAACAGCGTGTTCTGACCACGGCGTCGCAGCCCTTCCTGC--- a score=11577.0 s hg17.chr17_random 1054962 126 + 2618010 ATTCACGGCATGACCCTGTTTGCCCAGCTTCCCCCCATACACAGCCCCGGACACACCCTCCTGGGGGAATGTGGTGGGCTCCGCACTGACCGCAGGATCTGCCTCTCACCAGGGATTCATATCCAC s panTro1.chrUn_random 236842135 126 - 240967748 ATTCACGGCATGACCCTGGCTGCCCAGCTTTCCCCCATACACAGCCCCGGACACACCCTCCTGGGGGAATGTGGTGGGCTCCGCTCTGACCTCAGGGTCTGCCTCTCACCAGGGATTCCTATCCAC s mm5.chr11 169946 98 - 121648857 ---------ATA----TGCCTGCAGAGCTTCCCTCAGTG---AGGTTC---CATCCCTTAGTGCTGGAAAGTGGTGTAC---------ACAGCAGGTCCTGGCTGGCACCTAGCCCTTCTCTCAAC a score=1919.0 s hg17.chr17_random 1055088 20 + 2618010 ACGAAAGGGCCAGAGCAACA s panTro1.chrUn_random 236842261 20 - 240967748 ACGAAAGGGCCAGAGCAACA a score=10767.0 s hg17.chr17_random 1055108 70 + 2618010 GCTGGCACATCCCCTTCCTTCCTCCACCGTTCCCACTTATTCTTCAACCA-GCCCTAACCAGGCAGGGAGC s panTro1.chrUn_random 236842281 70 - 240967748 GCTGGCACATCCCCTTCCTTCCTCCACCGTTCCCACTTATTCTTCAACCA-GCCCTAACCAGGCAGGGAGC s mm5.chr11 170222 63 - 121648857 CCTAGCACGGCTTCCTCCTCCC--------TTCTGCTCATTCTTCAGATACACCCCAGCCTGGCAGGAAGC a score=2991.0 s hg17.chr17_random 1055178 342 + 2618010 CCAGGTCCCACGGAAAATCTCTATGAGAAAGTAAGACAGAGGGCAGACCTCCGCCGTGGTCCCTGGAGAACCAGTCGGC--GCTGAC-ACCAGGAGCAGGAACTTACTCTTTCCCAGAGGCAGGCAGGGACGGTCATCCTTGCCCAGAGGCCTCGCCTAGAGTGGGGTCCCAGCCCTGCAAGGGACCCCTAGGAAGGGGAAAGGAGCCACTTGTACATCC-TTGCTTCCTACGGAGCCCTCACATGGAGCACATGGCCACTTCG--GTCTGGGTCTCTCCGTGCTGCTCACTGTGC---TGGTGGGGTGTGCTGCGGAGG-TCTCTGGGGAGGTCCCAGGAGCGAGAATGGA s mm5.chr11 170285 330 - 121648857 TTGGGTGCCATTAAGAATTCCCATGAGATATTAGGG-GGAAAACA-ACACCTGAAGGGGCTCCTGGAG--CCAG-AGGCTTGCTGACAACTTAGATAAAGTATCCTCCCCATCTCAGATTCAATTGTAAAC---TATTCTGCCCAAAAGTTCACTCCAAG---GAAGACCCAGTCCTTTGGAAGCCCCTTATGAA-GAAAAAGGAGCCACCTATTTGTCTGTTGCTTCCTA-AGAGTCTTCATGAGGATGATGGAGGTGGTTTGGAGCCTGTAGCT-----TAGTGTTTGCAGAGCAAGTGCTGGTATGTACTTCAGAGGCTTTCCAAGGA----CTGTAAGTAAAAATGGA a score=20430.0 s hg17.chr17_random 1055520 222 + 2618010 CCAGGCCCAGGGTAGAGGTGCAAGAGGGTCCTGCCCTTGGCTCCCTCCCCCGGCACAGGCCAGTCAAGGTGGAGAGGAGGCCCCAGCTTGTCCAGCTGGCAGAGGCTAGCCAGGGGGACTGACATGGTGTCACTCTAACCCTCATTTTTCTCAGCCCTTCCATTCCTTATGACTT--CTTGCTAGGAGAACCCTGACACCATCCCTGCTGACACTGGAGATATT s panTro1.chrUn_random 236842351 221 - 240967748 CCAGGCCCAGGGTAGAGGTGCAAGAGGGTCCTGCCCTTGGCTCCCTCCCCCGGCACAGGCCAGTCAAGGTGGAGAGGAGGCCCCAGCTTGTCCAGCTGGCAGAGACTAGCCAGGGG-ACTGACATGGTGTCACTCTAACCCTCATTTGTCTCAGCCCTTCCATTCCTTATGACTT--CTTGCTAGGAGAACCCTGACACCATCCCTGCTGACACTGGAGATATT s mm5.chr11 170615 152 - 121648857 CTGGACAAAAAGTTGG--------------------------------CCCAGAATATGTCAAACAAGGCAGAGAAGAGTCCTAGACCTGATCAGT---------------------GCTGAGATGGTGCCTCCCT-CCCTCCCTTCCTCAAAGCCCCTCTGT--CCTGTGACCTTACACCCCAGGACTGCAGTGTCA----TCCTACTGAC------------ a score=43462.0 s hg17.chr17_random 1055742 270 + 2618010 CCAGAGAGGCCGATCGTCATTGAAAGGGAATGCTCCGTGAACCCTCTGAGCCCTCTTTGACTTCAGAAGCAATAGTATCACAGCTCACAAATTCAGTAGAAAGTCCGAGTTGCATCAGTTTGGA---AGTCATGCGGTCAGGCTTCCTGTACCCAGAGGGTGATTCAGCCGCAGAAAGCTCTGGGCTGCACCCCACCCACCCCTGGCCTTCAGGGCCCAGCCACATTGAGGCTGCAGGCGAGCCTGGCCCCCATGCCTGAGAGCCAGATTCCA s panTro1.chrUn_random 236842572 273 - 240967748 CCAGAGAGGCCAATCGTCATTGAAAGGGAATGCTCCGTGAACCCTCTGAGCCCTCTTTGACTTCAGAAGCAACAGTATCACAGCTCACAAATTCAGTAGAAAGTCGGAGTTGCATCAGTTTGGATTCAGTCATGCGGTCAGGCTTCCTGTACCCAGAGGGTGATTCAGCCGCAGAAAGCTCTGGGCTGCACCCCACCCACCCCTGGCCTTCAGGGCCCAGCCACATTTAGGCTGCAGGTGAGCCTGGCCCCCATGCCTGAGAGCCAGATTCCA s mm5.chr11 170767 193 - 121648857 CTAGAAATGCTGACCTCCA---------AATG--------------------------------------------------GCT--CAGACTCAGCAGAAAATTT--------TCAG--TGGA---AACCATATGAACATCTTTCCTGGAGTCCAAAGGTGATGCATCACAAGAAAGACCCCAACTTCCCTCCACCCA-TCCGGTCCCTCAGAGGTCGGCCATGCTCAGGGTGC-----ATTATAGTCCCTATAACCAAGATTCAAATGCTA s canFam1.chrUn 84677566 232 - 91062872 CCAGAGAAGGTGACGGCTCTTGAAAGG-GGTGCTCGGCGAAAGTCCTCACCTCCCTCTGCTTCCAGGAGCAGCAGTAACTTTGCT--CGTATTCAGCAGAAAGCCA-AGCTGCCTCAGTCTGGA---GGTCATGTGGCCGGGCTTCCTGGAGCCAGAGAGTGACTCAGCTCCAGAAAGCTCTGAGCTGTACCCCACCCAC--------------------CCACACCACGGGTGT------GCCTGGCCC--------GGCGCGCACATTCTG a score=35755.0 s hg17.chr17_random 1056012 269 + 2618010 TTCCCTGGCAGCCTCACCTTGGATCGGACAGGGAGGGATCCTAGGACAC-CAGCC-TCGTCTATCCTCCCTGGGACAC-CCTAGAACCTCACAGCCTGTGGGAAACACCAGGGCATGGAGGGTCAAGCCTACAAAATCCCCCAGTAGGTGATTAGGATAAGGTGAGCACTGGCCCTAGCTGACTCAGGCCAGCC----CCCCAAGCAGCCAGACCACGTGAGAAGTGAT-GGCCACACAATGCTCTGGGTGTCTCAAGGAAAGTCCAAGAGCAGTGG s panTro1.chrUn_random 236842845 269 - 240967748 TTCCCTGGCAGCCTCACCTTGGATCGGACAGGGAGGGATCCTAGGACAC-CAGCC-TTGTCTATCCTCCCTGGGACAC-CCTAGAACCTCACAGCCTGTGGGAAACACCAGGGCACGGAGGGTCAAGCCTACAAAATCCCCCAGTAGGTGATTAGGATAAGGTGAGCACTGGCCCTAGCTGACTCAGGCCAGCC----CCCCAAGCAGCCAGACCACGTAAGAAGTGAT-GGCCACACAATGCTCTGGGTGTCTCGAGGAAAGTCCAAGAGCAGTGG s canFam1.chrUn 84677798 241 - 91062872 TTCCCTCGTTGCCTCGCCTGACCTC--------------CCCAAGACACGCTGCCACCAGCTGCCCTCGCCAGGGTGCTCCCAGCACCTCCCAGCCTCCAGGAAGCG-CAGGGCATGGAGGCTGCAGCCTGCAAAGCACCCCCGCAGGCGATTAGGACAA-----------GCCC---CTGACTCAACACCCCCTCTGCCCCAGAGAGCCAGACAA----GGCTGTGTTCGATCAAACA---CTCTGGGTATCTCTCGGGAAGCACCCGGGTGGCGG a score=482.0 s hg17.chr17_random 1056281 5 + 2618010 CACTC s panTro1.chrUn_random 236843114 5 - 240967748 CACTC a score=104154.0 s hg17.chr17_random 1056286 970 + 2618010 CGGGCTGCATCCTTGGAGTAAGCACAGAGCAAGACCCCAGCATGCTTTGCAGACCCCGCCTTATGAGCCCTGCACCCCACTGCTCCGGGAG-GGGTCAGCACCCCCATGCCAGGG-----CTGGTTTTCGGGGTGGGTGCCTGGACAATCTGAAGGACCTTTCGGCCACAAGGTGTTGAGAACTCTGCAGAGGATGCTGGGGATTAGCACAACAAGCTCTGCTCCTTC-AGGCTGTGCGAGGCCTCATGAAAGCTCCTAAAAATCAGAGGAAGGGCCATGGCAGAGCCTGGGACAAGTGGGCAGCTCACAGAGGGGACTGGGTGCTTGCCATTAGCCCAGACTT-------------------CTCCCACTGCTCCTGCCTCAA-CTGCTACTGCCCGGAGTCTAAGCCCACTTTGTTGACAAGTACCCATTCTATAGAGAG-CCTCGCCTAACTCCAGGTAGAGGCAGAAAAG------TGTGTGTAGATCAAATGGCCCAGCTGGCAGCAGAGCCAAAAGTCAT-GCTTACTTGCTGGCCA-----------------GCCTTGCACAAGGCACC---AAGGGTCAC-----CTCTGCA-----------GGCTTCAGATC-CTGCCCTCTGTGAACAGTCAAAAAGAAGGTGTCAGAAGGAGCTAGAGGATGCAAGGGTGGCCAAGGGGCACAGAGGAGGGTCAGGTTACACTGGGAGGGAAGAGAGGCAGCCTTTGCATTCTCTAGGAGAAGCAGGGCGGGAGACTTTGGAGCCCAGCTCCCTGATGGGACATAGGGGAACCTGCGGGGACAGGAGAGTGTCTTTGATAGGCGAGCCCAGTGCCTCTTACCTTCAGGAGGGCGCCTGAGCTGTGAAGTCTGCCCCTGTTGCTCAGAGATAGTTCCCTCCAGCAGGAAAACC-TCTTTGAGGTGAGTTACGGCTTCTGGAGG-CACAAGGA-------------TGGGCCGAGGTCA-CCAGGCCTTGCCTGTCCACCTTACCTACCCTGAAGTGCATGACCTTTCTTAG-GGACAGAGCCTCTCT s panTro1.chrUn_random 236843119 989 - 240967748 CAGGCTGCATCCTTGGAGTAAGCACAGAGCAAGACCCCAGCATGCTTTGCAGACCCCACCTTATGAGCCCTGCACCCCACTGCTCCGGGAG-GGGTCAGCACCCCCACGCCAGGG-----CTGGTTTTCGGGGTGGGTGCCTGGACAATCTGAAGGACCTTTCAGCCACAAGGTGTTGAGAACTCTGCAGAGGATGCTGGGGATTAGCACAACAAGCTCTGCTCCTTC-AGGCTGTGCGAGGCCTCATGAAAGCTCCTAAAAATCAGAGGAAGGGCCATGGCAGAGCCTGGGACAAGTGGGCAGCTCACAGAGGGGACTGGCCGCTTGCCATTAGCCCAGGCTTCTCCCACTGCTCCTGCCTCCTCCCACTGCTCCTGCCTCAA-CTGCTACTGCCCGGAGTCTAAGCCCACTTTGTTGACAAGTACCCATTCTATAGAGAG-CCTCGCCTAGCTCCAGGTAGAGGCAGAAAAG------TGTGTGTAGATCAAATGGCCCAGCTGGCAGCAGAGCCAAAAGTCAT-GCTTACTTGCTGGCCA-----------------GCCTTGCACAAGGCACC---AAGGGTCAC-----CTCTGCA-----------GGCTTCAGATC-CTGCCCTCTGTGAACAGTCAAAAAGAAGGTGTCAGAAGGAGCTAGAGGATGTAAGGGTGGCCAAGGGGCACAGAGGAGGGTCAGGTTACACTGGGAGGGAAGAGAGGCAGCCTTTGCATTCTCTAGGAGAAGCAGGGCGGGAGACTTTGGAGCCCAGCTCCCTGATGGGACATAGGAGAACCTGCGGGGACAGGAGAGTGTCTTTGATAGGCGAGCCCAGTGCCTCTTACCTTCAGGAGGGTGCCTGAGCTGTGAAGTCTGCCCCTGTTGCTCAGAGACAGTTCCCTACAGCAGGAAAACC-TCTTTGAGGTGAGTTACGGCTTCTGGAGG-CACAAAGA-------------TGGTCTGAGGTCA-CCAGGCCTTGCCTGTCCACCTTACCTACCCTGAAGTGCATGACCTTTCTTAG-GGACAGAGCCTCTCC s canFam1.chrUn 84679108 806 - 91062872 CAAGCCTCATCC-TGTTGAAAGCAGAACGCGAAGTCCAGGGCCACCGTGCAGGCCCTGCGCCGAGAG-CTTCCATCCACCTGCTCCAAAAGCAGGCTACCACCTGCACACCCTGGATGCCCTGGTTCT----GCGGGTCCCTGGCTACTCT--------------CC----GGTGTCAAG---------------GCTGCGG-TCAGCACAGCAAACCCTGCTCCTTCTGGGCTGCA-GAGTCCCCACG---------------CAGCGCAGGGG----GGCAGGG------------------------GAGGGGCC---------GCCAC---------CCT------------CTGCAGCCTCCCTACACCACGGCCTTGACCTGCCGCTGCCCTGAGTCCAAGCCT-CCTTGTTAATAAGCAGCCATTCCTGCGCGCGCCCTCACCTAGCTCCAGCCAGAGACGGGAGGGAGAACCTGAGCTTTGATGGAACGGCCCGGCTGCTGGCAGGGCCCAGAGGGTTAGCCCGCTTGCTGGCCACCTGGGGGCCCTTCCTCGATTTGCAAAATGTGCCTCTGAGAGTCGCAAACACTCTACCCAGAACAGAGTGCCTGCAGGTCACCGCCCTCC-TGCACAGCCAGAGAGAAGATGCTGGAAG-----------------------CAATGAGCAC-------TGCCaga-------gggatggaggagaggc----------------aggaggggcggggagggg--------------------tgagg------aggggCACC-------------------------------------------CTTCTTCTCAGAGG-----TTGAG-GGTGGGG---------GTTGCCTGCAGACAGTCTCCTCCATCAGGAAAACTGGCATCTCGTGGAGTTGCAGCTTCTGGAGGACACAGTGGGAGAGTTACAGCTGGGGCAGGGGTCATCCCTGCCGCGGCCACCCGCCTGACCTACTGGGATGCTCCTGGCTACTCTGGGTGGGCTGGGCCGCCCT a score=30700.0 s hg17.chr17_random 1057256 331 + 2618010 AGTTAATCTTAGAGCCTGGCCAGGAGCCCAGGATGGGGCAGCATGGGGCACAACACTTACTAGATGGTCAGGCGAGGGGAGCAACTGGGACCCTCCCCTCCAGTTCGAGCCAtgtgtgtcatgtatgtgcatgtacatgtgtgtatgtaatgtgaagtcagatgtgtgtatgtgt-gcatatgcaaggacatgctaatgtgtgtgtgcatgtacacgtgtgaatctgtgcaagcacatacaagtgtgcatgggcgtggacatgtatgtgcatgcatgtgGAAGTAAGTGTACAGGTACAGTCTGAATCtgtgtgtgcacacacaagtgtgca s panTro1.chrUn_random 236844108 332 - 240967748 AGTTAATCTTAGAGCCTGGCCAGGAGCCCAGGATGGGGCAGCATGGGGCACAACACTTACTAGATGGTCAGGCGAGGGGAGCAACTGGGACCCTCCCCTCCAGTTCGAGCCatgtgtgtcatgtatgtgcatgtacatgtgtgtatgtaatgtgaagtcagatgtgtgtatgtgtggcatatgctaggacatgctaatgtgtgtgtgcatgtacacgtgtgaatctgtgcaagcacatacaagtgtgcgtgggcatggacatgtatgtgcatgcatgtggaagtaagtgtacaggtacagtctgaatctgtgtgtgcacacacaagtgtgca a score=2492.0 s hg17.chr17_random 1057587 26 + 2618010 tgggtgtgggcatgtgtgtatgtgca s panTro1.chrUn_random 236844617 26 - 240967748 tgggtgtgggcatgtgtgtatgtgca a score=131238.0 s hg17.chr17_random 1057613 1145 + 2618010 tgcatgtgga----agtgtggaagtgtacaggtacagtctgaatctgtgtgcacacataagtgtgcatgggtgtgggcatgt--gtgtatgtgcatgcatgtggacgtgtgtgagtTGCCCTAGCACATGTTTGTACATATGCTTGTGTGCA--CCCATGCTAGGCTGCTCTCCCTCCTGGTTCTCTTTCAGGACAGGCCAAGTGAACCAGGGCGAGCTCTTCTCTCCCTCTGACGGCCCCTCCACAGGAGAGGGACCTGGGACCAAGGTTCCTTCAGCCATCAGACCCTAAGT----CTCAGGGCACAGGGTCAGAAAGCTTCTAAGGACCCATGAAAATATAGAAA----------------------------------CTGGGTGAAATTAACTCTTATTGGCCCGACATATGAAAAGAAAATTGCTTTTGAGCTTCCAGGAGATCTTCTC----AGGTTTTGTTTTGGGGATTTCCTGGGAAGGGCATGTTTCCAAACAAGACTCTTGCCGTCTGCTCCCCCGGAGCTCCCCAC------------CCAGCCAGGAGAGGCCACTGG-CAGGGAAGAAGGTCCAGCCCAGCACAGAC--TCCCCAGGGAGGGCCCCAGCCCAGTGGAAGGACCATGGAAACCATGTCAGTCTCCCTCAGCGGCTGCCCTGGGTTGACATGTCCCCTTAGGGATCTCAGGCTCTCAACCCTCTAGTCAATTCTGAGCTGAGTTTTTCTGGAGCTTTATATTCAACT--CTGACTTTGCTTCCC-TTCACCTCTACTCCCCACCCTAGAAATAGAAACCTGAGGTCAGGAAGTGCTGAGGGTCCTTGGGTTTGGTGTCGGGGAAGACAC--CGTGCT---------GACTCGAACCCACTAGGCCTGGAGCCCAAAAGTCCCTTCTCTGTGACCTGCGACAAGCCTCTACAGCCACGTCTCCTTCCCTGTGGTAACCGAGTGACACCAATTGGCTCCCAGCCACCGCTGGGCCTCAGGCAGTTGCAGTGGCTTCGGCACTGGCTTTGCTGAGCCAGTGACAGCGACGGCACCTCCTG-----GATGTGAAATGTGCCAACACCCTGGCCTCGGGGACCGTACGGCGTGGTGTGAAATTTCTGTTTTAACGCTCCATGACCACATAGGTCTTGGCTTTTTATGAGTAAAGCAGAGACCGTGTTGTACCCAAGCT---CTCTGGGTGGCACCCACAGCTTC s panTro1.chrUn_random 236844643 1148 - 240967748 tgcatgtgga----agtgtgtaagtgtacaggtacagtctgaatctgtgtgcacacacaagtgtgcatgggtgtgggcatgt--gtgtatgtgcatgcatgtggacgtgtgtgagtTGCCCTAGCACATGTTTGTACATATGCTTGTGTGCA--CCCATGCTAGGCTGCTCTCCCTCCTGGTTCTCTTTCAGGACAGGCCAAGTGAACCAGGACGAGCTCTTCTCTCCCTCTGACGGCCCCTCCACAGGAGAGGGACTTGGGACCAAGGTTCCTTCAGCCATCAGACCCTAAGT----CTCAGGGCACAGGGTCAGAAAGCTTCTAAGGACCCATGAAAATATAGAAA----------------------------------CTGGGTGAAATTAACTCCTATTGGCCCGACATATGAAAAGAAAATTGCTTTTGAGCTTCCAGGAGATCTTCTC----AGGTTTTGTTTTGGGGATTTCCTGGGAAGGGCGTGTTTCCAAACAAGACTCTTGCCTTCTGCTCCCCCGGAGCTCCCCTT------------CCAGCCAGGAGAGGCCACTGGGCAGGGAAGAAGGTCCAGCCCAGCACAGAC--TCCCCAGGGAGGGCCCCAGCCCAGTGGAAGGACCATGGAAACCATGTCAGTCTCCCTCAGCGGCTGCCCTGGGTTGACATGTCCCCTTAGGGATCTCAGGCTCTCAACCCTCTAGTCAATTCTGAGCTGAGTTTTTCTGGAGCTTTATATTCAACT--CTGACTTTACTCCCC-TTCACCTCTACTCCCCACCCTAGAAATAGAAACCTGAGGTCAGGAAGTGCTGAGGGTCCTTGGGTTTGGTGTCGGGGAAGACACACCGTGCT---------GACTCGCACCCACTAGGCCTGGAGCCCAAAAGTCCCTTCTCTGTGACCTGCGACAAGCCTCTACAGCCACGTCTCCTTCCCTGTGGTAACCGAGTGACACCAATTGGCTCCCAGCCACCGCTGGGCCTCAGGCAGTTGCAGTGGCTTCGGCACTGGCTTTGCTGAGCCAGTGACAGCGACGGCACCTCCTG-----GGTGTGAAATGTGCCAACACCCTGGCCTCGGTGACCGTACGGCGTGGTGTGAAATTTCTGTTTGAACGCTCCATGACCACATAGGTCTCGGCTTTTTATGAGTAAAGCAGAGACCGTGTTGTACCCAAGCT---CTCTGGGTGGCACCCACAGCTTC s mm5.chr11 171947 1032 - 121648857 TGTATGTGGACATGAGCATGGATGGGCTCGTGTATAGTC-AAATGTATGGG-----ACAGTCCTGTCTGAGCATGCACATACAGGTGTATATGCATGGGTGTGCATGTATAGAGGCTATATGAGTAAATGAATGCATGTGTACCTGGGGGCAGGCTCATGGTG-----------CTCCTGGT----------------CCAGGTAAGCAAG--------CAATCCTTCTTCTGAAAAATACCAGCCAAGCAGAGGGTCTGAAGCCTTGGTTCTTCTGACAATCAGAATCTAAAGCTCACTCAGGGCACAGAGTCCATGAGCTTCTAGGAATCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAATAAAAAATTGAACCTAGAGAAAAATAACTTCCACTGGCTCAAAATAT-AAAAGAACATTGATTTTGATCTCT------ATTATCACACCAAGATTTTGTTTGGGGGATTCACTATAAAGTATGCATTCCTA---GAAGCCCCTCCAGTTTAC-------GAACTCTTCACATCAGCACTTATCCAGCCGAAAGAAC--------CAGGAAAGAAGGGTCAGTCCAGGGTGAGCAATCTCCA------GCCCCAGCCTACCGCAG----------------------------CAGCGGCTG--GTAGTTCTGCATGTCCTCTTAGGGACATCA--CTGCCGTTTTTCTAA-CACCTCACAGTCAAGCT-------AGTTTTCTAGCAAACTGGCTGTCTGGGCTCTTTGCTGACCCTTCCACCCCATCCTAGCAATGGAAACCTGAAGTCAGAGAGTTCTAAGGGCCCTCAGGCTTCAGGTAGATGAATGAGC--CGTCTCTGCCCACAGAACCCAAACCCAGTA-----GAAGCCACAAGCTCACTTTCCTCTGA----------------ACA----------------TATGGTAACCTAGTAGT----------------------CTGAGCTTCTAA----------GGTCTCAGCACCCATTTTCCTAAGCTAATACAAACCAAGCAAGCTTCTGACACAGTCAGAAAATGTGCCAGCAGCCTTG----GGTGACTGTATAGGACATTGTGAAACATCGG-------------TGACCACACAGGCTTTGCTTCTTCAGAAGTTAAACAGAAGCCAGACCATAGATTGGCCATGCTGTACATGATACCCACAACTTC a score=106585.0 s hg17.chr17_random 1058758 737 + 2618010 CTCAGCGGGGTAA--CGGTGACGGGTGGACAACTGGCCCACAGGCA-----AACTGCAC-GTCCCCCACGGCGAGCATCTCTGAGCTGCACTGACCAGTTCAGGCCCATGCGTCACCGGCATTTTTCTGAGCCAGCTCCTCTGGTTCATG-AGAAGGTCTGAATTCAAGAAATGAACGCCCAGCAATTAGCAATGTCCACAGAATCAAAGGAGCATGGTTTTAGTTGTCCTCCCAGGCAGCTTTGCCAGTCCGGGTATGAGGTAAAGCCAGAGGGACCCTGCCTCACCCACGCGCCCCAAGAGGGGTCCAAGGACCACCGACTGT-CCCCACTTCCCTGGAACTGAGGATGAGGCTGATTCATGTGTTTCCTGTGACGGCCACGACATCATCATATCCGCTCGGAGAACTATTTTTAACTGATTTATGTATTTCTTGTATGAGGAAGACACCAACTTCTCCTTTAGTCAGTTTTACAGGAAAGTATTGCAGCTGTGCTCAGCTCAGCAATATTAATCGCC---ACAGAGC---------ACCCTCCGAAGTCTTGC------AAAAATTAATAAAGTTGGAAATATGAGTCAGGTTTGGATGCCACTCATTCTGAAAAAGAAGAAACTCAATAATAGTTACCTTCTCCTGTAGAATCAACGAGCCCGGTTTGCGAAAGAGCACCCTGTGTCTTTAAA---TTTCCGTGGCGTGCCCACAGAGGAAGGTGTTCCGACCTCTGCTGCCGCTGCAGCTCCGGGGCACTGAC s panTro1.chrUn_random 236845791 737 - 240967748 CTCAGCGGGGTAA--CAGTGACGGGTGGACAACTGGCCCACAGGCA-----AACTGCAC-GTCCCCCACAGCGAGCATCTCTGAGCTGCACTGACCAGTTCAGGCCCATGCGTCACCGGCATTTTTCTGAGCCAGCTCCTCTGGTTCATG-AGAAGGTCTGAATTCAAGAAATGAACGCCCAGCAATTAGCAATGTCCACAGAATCAAAGGAGCATGGTTTTAGTTGTCCTCCTGGGCAGCTTTGCCAGTCCGGGTATGAGGTAAAGCCAGAGGGACCCTGCCTCACCCACGCGCCCCAAGAGGGGTCCAAGGACCACCGACTGT-CCCCACTTCCCTGGAACTGAGGATGAGGCTGATTCATGTGTTTCCTGTGACGGCCACGACATCATCATATCCGCTCGGAGAACTATTTTTAACTGATTTATGTATTTCTTGTATGAGGAAGACACCAACTTCTCCTTTAGTCAGTGTTACAGGAAAGTATTGCAGCTGTGCTCAGCTCAGCACTATTAATCGCC---ACAGAGC---------ACCCTCCGAAGTCTTGC------AAAAATTAATAAAGTTGGAAATATGAGTCAGGTTTGGATGCCACTCATTCTGAAAAAGAAGAAACTCAATAATAGTTACCTTCTCCTGTAGAATCAACAAGCCCGGTTTGCGAAAGAGCACACTGTGTCTTTAAA---TTTCCGTGGCGTGCCCACAGAGGAAGGCGTTCCGACCTCTGCTGCCGCTGCAGCTCCGGGGCACTGAC s mm5.chr11 172979 621 - 121648857 CC-----AGGTAA----------GGGGGAGCATGGGCCCAGAGGAA-----GCTTGAAG-GC------TGTGGAGTATCCA-------------------CACACACATATGT-GCCCCCCTCTTCCCAGACCAG---CTCTGGTT---------AGTCTGAATCCAGGAAGCAAC--CCCAGCCTTCAA-AAGGT--ATGGAAGC-------CACAATGTTAGGTGCTTCCTTGGGC------------CAGGGTATAAGGTAAGGT--GAAGAACT--------TCCAAACAGCCAAGAAAGAGCCCCAAACCCATGGACTGT-CCACATCTTCCTGT------------GACTGATTCATGTGTTTCCCGTGACAGCCGCAGCAACATCACATCCGTTCTGAGGACTATTTTTAACTGACTTATGTATTTCTTATATGAGGAAGGTATCAGC-----------TCATTTCTGCAAGAC--TTCTGCAA-TGTGTTCATGTCAGCAGTATTGA-CACCAGGATGGAGC--CAGTCGGGCCTTCAAAAATCATGC-------AAAATTTATGAACTTAGAAGTGTGAGTCAGGCTTGCAGGCCACTCATTTTGAAAAAG--GAAACTC---AGTTGTCAGGTCTTTCTGATTAATAAACACATCCATCTTGAGAGAGAATGCACTGTTTCTTTAAAACCTTTCAGAGATG---CCATGGAAGAGAGTTTATGGATGGATACTGGCTCTACC---------CACTAAC s canFam1.chrUn 84681722 631 - 91062872 CCCGGCGGAGCGGCACAGTGAC---------ACGGCTCCACGGACACCGCCAGCTGCGCTGTCCCCAGGGAAGAGCGGCCCTGGGCCGG-----------CGAGGCCTTGCAC-----GCGTGTCTTTGGGGC-----CCCTGTGCTAGGCAGGGGGTCTGAG-CCAGGAAATAAAGAGCCGGCAACAACCAATGC--------------------TGGCTTAGCCATCCCTCTGACGGCCCCGGCCTAGCCCGGTGCCCGGTGGACGCGCAGGGACC----TCCTCCGAGTCCCCCGGGGAGGCGCCCAGAGGCCCAGGACTCTGCCCCACGGCCCTGCCAGTGGCGATGAGCCTGACTCACGTGCTTCCTGCGACAGCCACCGTATCATCACATCCGCTCGGGGAACTATTTTTAACTGACTTATGTGTTTCGTGTCCGAGGAAGGCACCGAGTTCTGTTTTCATCCAT-CTACAGGGAAGTGTTGCAACCGCTCTCAGCTCAGCAGGACTCG-CCCC---GCACAGCGGCGGGGGCGCCCGGCTGGGCAACACGGCCTCAGAGAGTAATAAAGTCGGAAATGTCGGGCAGGC-TGGCCGCCACTCATTCCGCGGAGAGGGACGCTCACCATT-----CCCTCCCCCGTGGGCCCCACAAGCCC------------------------------------------ACGCGCCT-----------------------------CCCGGCCGCCTCCCAGCCCTGAC a score=11504.0 s hg17.chr17_random 1059495 106 + 2618010 CACACAGAGCTGGTTTCTGCACTTGCATCGCTTGCCCGAGAGCTAGTCACCGCGGGCGTG-GGCGAGGCTGCCAGGGGCCACCTGCCTGCCAGAGCCAGGGTGCCTA s panTro1.chrUn_random 236846528 106 - 240967748 CACACAGAGCTGGTTTCTGCACTTGCATCGCTTGCCCGAGAGCTAGTCACCGCGGGCGTG-GGCGGGGCTGCCAGGGGCCACCTGCCTGCCAGAGCCAGGGTGCCTA s canFam1.chrUn 84682353 94 - 91062872 GGCGCCCAGCGGGTTTCCGCGCGGGGAACGCCTGGTCGTGGGGACGGCAGGGCTGCCGGGCGGCCGAGGGACCAAGGGCCACCTG-----TAGCGTCCG-------- a score=53304.0 s hg17.chr17_random 1059601 834 + 2618010 TCTTTAAGGCCAGGGGCTCCTGAGGACACAGACACTTCCCTCCTCTTTCAGACAAGGACAAGCTCAGGGA--------CATGGGTG---GTTTGGGCTCAGGCTGACCGGGAAAGACACG------TAGAAAGT-TTGGTGTGCGCTCTGGGTTGTGGGGGCCCGGCGGGAGGGTGGGCTTCAGGATCCCGTCCCAGGACGCGTTCATTCAGCGGCACTCACACCCCCAGCACCTGCTCCCGGCGGGTGCCG---AGGCTTCTTTCACTCTTCTTAGCATCTCCCCATCACTCAC-TTGACTCCAACCAACAGCCACTTATG------------------------------------------------------TACCAGC--TACGCGCCAGGTTGCTGAACAGCTCTGAGCAATTA----AAGGGCAGCCAGGAGCAGCTGGGAGAGGAGGGGCTGGAGGAGGAAGAGGGGT------CCAGGACCCAGGGGCTCACGGG-GCATCCCGAAGTCTTTGTGGAGACCTAGGGTTGGGGCTGCAGCAGGGGGT--CGGGGGGCAGCCAGAGATCCCGGTAGACCCGGGAGGGGCCTG-----ATCAAGGAG--AAGGAGGGGCCACAGAGCCAGGGTC-------AGGACAGACTGTGAGGGGGCCTCTTGTTG------------GGACAGCGTC---CCCTCGGAGC-AAGAGCCCGGGGCGTGTGGCCGCCTCACTGTGACCTCCGGCCGTGCAGGCCTCTGGGGAGGGTGGAGATGTTTTCCCCTTCTCAGAGCACGCAGGTGTTACCTGCCCACAG--------------------AGTAGGAAG----------TGGGG------------TGCTGTCACCTGCACCGCACAGGTGAGGAAGCTGAAAA--------------CCCAAGACC-------------------------CAAG-------------CCATTT----GGTCTCACTCT----------------------GG-------CTGAATCACCTGGAGGCTTTGGGAAACAGATTT-------------------------------TCTTCCCCCTTCCAG s panTro1.chrUn_random 236846634 827 - 240967748 TCCTTAAGGCCAGGGGCTCCTGAGGACACAGACACTTCCCTCCTCTTTCAGACAAGGACAAGCTCAGGGA--------CATGGGTG---GTTTGGGCTCAGGCTGACCGGGAAAGACACG------TACAAAGT-TTGGTGTGCGCTCTGGGTTGTGGGGGCCCGGCAGGGGGGTGGGCTTCAGGATCCCGTCCCAGGACGCGTTCATTCAGCGGCACTCACACCCCCAGCACCTGCTCCCGGCAGGTGCTG---AGGCTTCTTTCACTTTTCTTAGCATCTCCCCATCACTTTC-TTGACTCCAACCAACAACCACTTATG------------------------------------------------------TACCAGC--TACGCGCCAGGTTGCTGAACAGCTCTGAGCAGTTA----AAGGGCAGCCAGGAGCAGCTGGGAGAGGAGGGGCTGGAGGAGGAAGAGGGGT------CCAGGACCCAGGGGCTCACGGG-GCATCCCGAAGTCTTTGTGGAGACCTAGGGTTGGGGCTGCAGCAGGGGGT--CGGGGGGCAGCCAGAGATCCCGGTAGACCTGGGAGGGGCCTG-----ATCAAGGAG--AAGGAGGGGCCACAGAGCCAGGGTC-------AGGACAGACTGTGAGGGGGCCTCTTGTTG------------GGATAGCGTC---CCCTCGGAGC-AAGAGCCCGGGGCGTGTGGCCGCCTCACTGTGACCTCCGGCCATGCAGGCCTCTGGGGAGGGTGGAGATGTTTTCCCCTTCTCAGAGCACGCAGGTGTTACCTGCCCACAG--------------------AGTAGGAAG----------TGGGG------------TGCTTTCACCTGCACCGCACAGGTGAGGAAGCTGAAA---------------------ACC-------------------------CAAG-------------CCATTT----GGTCTCACTCT----------------------GG-------CTGAATCACCTGGAGGCTTTGGGAAACAGATTT-------------------------------TCTTCCCCCTTCCAG s mm5.chr11 173680 787 - 121648857 TCCTTGAGGCCTGAATATCTTGAGGGCACA---------TCTCCCTTTCAAACAAATGTGCACTCAGG----------CCTGCATGAACATCCAGGTCCAAGTCAAGCCTGGGGGACTTG------TAGAGATTGTCTGTCAGTGCCCTGGGTAGCAGTGGCCTGG---------GAGCATCAGGA--CTGTCCC---ACTGACCTGATCAGTGGTGCCTGTCCTCTTAACACCAACTCTAAGCCAGCTCCAGACAGACTCCCTTCTCTTCTCTGG-----TCTCCAT-----GC-ATGCTCTCAGCAGGAGGCTGCCTAC---------------------------------------------------------CCAGC------------------------CTTTGAACAATTA----GCAGACAGCTACAACAAGCTAGG------------GGAAGAGGACTAAGG-----------AGACCCAGAGGCTCAAAGATGCCTCCTAAAG-CTTTGTAAAG---TCGAGTTTGGGATTGTGCA--AGTT--CAGGCAGC----------CCCGATAGGCCTGAATGAG--------------AGCAA--GAAAAAGTGCTACAGAGCAGCAGTCCAACTAGAGGAGAGTCTAGAAGGGTGTCCCTCAATGCCTAGCCAGCAAGGAAGACCAT---CATGTGCCTC-CAGAGCCCAGTG---GTAGTCACAGGACTAGAA-------------AGGCCTGTGGAGTAAACACA---GTTTCATCCTCATCTGGGT-----GGTGTTATATA-TTATAG--------------------AATAACAA------------GGAG------------CATTGTGGACTCTGCTTAGCAAATGAGAAAGCTGAGACACTGGGCTACACATCTCCAAACCTGCTCC------TAGAGCCCCCCAGCAAGCATGGTA--GTTTCCATCTTAGAAGCCCCAGGCT----------------------GGCCAGAGTCTGAGTCTCTTAAAACCCTTGGCAGCCTGAGGT-------------------------------TTATCTCTATCCCAG s canFam1.chrUn 84682447 995 - 91062872 TCCTTGGGGTGAGGGTCTCCTCCGGACCCCAGCTCCCC-CTCCCCTTGCAGACGAGGAGAGGCTGCGGGAAGGGCTCCCACTCGTG---GTCCGGGTCTGTGGCCCCCGCGTCAGCTCCGTCCTCCTGCAGCCC-CTGGGCAGCCCCCCGCCTGGTGTGCTCCGGGCAG--CGGTGGCCTGCGAGGACCCTCCCTCGGTC--------CCCACGACCCACACAGCCTCAGCTCTCACTCGCAGTCGGGACCC------CACGTCTCACTATCCTTAGCCCCTCCCC-TAACTCACTTTGGCACAAATTAACAACCACTTTTTCTTTTCTTTCCTTTTTTTTTTAACCACTTTCTTGGCTCAGGCCCCCTTCTGGTCCTCCAGCAGCAAGCGGCGGGCGGCTGGGCAGCGCTGGGCAGGGACGCGGCGGGCAGCC-GGGGCAGCAGGG-GAAGAGGAACAAGAGGAAGGTGGCTGGTCCTCTCCCGGGAGCCGGTGCCCAGCAGG-AAAACAGGAGG---ATGCAGGACGTGGGGGTCGGGGTTG-------GGGTCACAGAGGTCAGC-------CCCGGAGCAGCCGAAAGGGGCCTGGGCCCAGCCAGGGGTCAGGAAGGTGTCCCGCAG---------------GAGCCGGACCCCAAGGGAGGCCAGGGTCA------------GGTTGTGCTCCAGCCCCCGGAGCTCAGCTCCCGGGGGCCGCGGTGACCG-----------------ATGCCAGCCGGTGGGTGGGG-----------CCCCCCTCTC-GTGCACACCTGTGCCACCTGCGCACAGGGCCGCTACCTGCTTTCACAGGTGAGGAGCCTGTGCCTCTGGGGCTGCAGCCCCGTTTCTGCCCCCGGCTCCGTGCAGAAGCAGGACCT---ACATCCACTTCCAGATCCCAGGAGCCGTCCCGGCTTGCAGAGGC------CAGGCTGGGCACGACCCCAATGT----GACCGTTCTCTCCCCAGAAGCCTCCGGCAGTGCGG-------ACGGCTCTCCCGAAGTCATTGGGGCGCTCAGGTGTTGATGTCACTCACCTGGAGGTGGCCCACCTCCTTCCCTCCTCGG a score=21163.0 s hg17.chr17_random 1060435 138 + 2618010 CCTTACCGCCACC---CTCCTCTCTTCTAGAAGAGGCAAGAAGAAGCGGGGGTGGGGGTGCAGGCCGAATTGCCTGGAGGTTAGGGGGACCCTCAGCGCCTGAGTCAGGGCTCTGTGAGACCCCCTGGTTCTTCGCTCACT s panTro1.chrUn_random 236847461 138 - 240967748 CCTTACCGCCACC---CTCCTCTCTTCTAGAAGAGGCAAGAAGAAGCGGGGGTGGGGGTGCAGGCCGAATTGCCTGGAGGTTAGGGGGACCCTCAGGGCCTGAGTCAGGGCTCTGTGAGACCCCCTGGTTCTTCACTCACT s canFam1.chrUn 84683442 127 - 91062872 CCCTGCC-CCACCTGTCCCCACTCTTCTGGAAGAAGCAGGAAGAGGTGAGGCCCAGGGTCTGG---GAACGGCTTGGAGGCTGGGAGG--CCCCAGGGCCCGATTT-GGGCTCAGTCAGACCACCGG-------ACTCACT a score=0.0 s hg17.chr17_random 1060573 16 + 2618010 GTGGGCTGAGACGCAA a score=973.0 s hg17.chr17_random 1060573 10 + 2618010 GTGGGCTGAG s panTro1.chrUn_random 236847599 10 - 240967748 GTGGGCTGAG a score=169.0 s hg17.chr17_random 1060583 6 + 2618010 ACGCAA s panTro1.chrUn_random 236847609 6 - 240967748 AAGCGA s mm5.chr11 174647 6 - 121648857 ACCAAA a score=133012.0 s hg17.chr17_random 1060589 657 + 2618010 GCTGAGTC---------GTCCACAGGAAGATACCCTCTtactctgaacaaccactctttcaaag----aggacactgaggctcagagaggctccccaaagcaatg----gccagccaccatgggcaggacgtggactccggcccaggaagcctggctccagaatc-atgctccaggcctctaagctgtaATTTGTGTCCTCCAGGGCTCACAATATCTAAGA-TTTAATGTGG-AAAAATGGTGCTATTCTGTCTCACCCCATGCCCCAAAATGAACTTAAAGGCaaaaaaaaaaaaaaaaaaaaagaaTAATTATAAAG--TTTGGAAGAAAA----TACAAGAGCATTTTGGTAT----------------AAAAATGCAAAATCCAAAGCCTTAAAGGAAAC--------Catttgactacttaaaa-----tttaaaa-----acttttatgtgatgaaaag--aacaaccttaaaaaggtaaaataataagcagcagactgggaacgaatatctgcaatgtaaacacaaagtactgatattcatcatatataaagaactcccacaaatcaacaagaaaaaagcaaatgactagctagaaaagtggtaaagggtaaaaa--cagaAACATAGTCAAATAAACTAATGAATATCACAAAATATCCAACCTCCCTATTAATCATAGAAATAAGAAATTGAAAAATATTTTATGACTAAA s panTro1.chrUn_random 236847615 650 - 240967748 GCTGAGTC---------GTCCACAGGAAGATACCCTCTTACTCTGAACAACCACTCTTTCAAAg----aggacaccgaggctcagagaggctccccaaagcagtg----gccagccaccatgggcaggacatggactccggcccaggaagcctggctccagaatc-atgctccaggcctctaagctgtaATTTTTGTCCTCCAGGGCTCACAATATCTAAGA-TTTAATGTGG-AAAAATGGTGCTATTCTGTCTCACCCCATGCCCCAAAATGAACTTAAAGGC------aaaaaaaaaaaaaaagaataattataaaG--TTTGGAAGAAAA----TACAAGAGCATTTTGGTAT----------------AAAAATGCAAAATCCAAAGCCTTAAAGGAAAC--------Catttgactacttaaaa-----tttaaaa-----acttttatgtgatgaaaag--aacaaccttaaaaaggtaaaataataagcagcagactgggaacgaatatctgcaatgtaaacacaaagtactgatattcatcatatataaagaactcccacaaatcaacaagaaaaaagcaaatgactagctagaaaagtggtaaagggtaaaaa--cagaaacatagtcaaataaactaatgaatatcacaaaatatccaacctccctattaatcatagaaataagaaatt-aaaaATATTTTATGACAAAA s mm5.chr11 174653 647 - 121648857 GCTGAGACACCGGAAGGGTTCACCAGAGGGTATTGTTTTCTTCGGTACAACCATGTTCTTGGAGAAGAAGGAACTAGAGGCTCAG-------CCACCAGCCAGCA----CCCAGCCTTAAT--GCAGGC--TGGACTCCAGCCCAGGAAG-TTGGCCCCAGTCT-----CTCCAGCCCTCTAGGCTATAATTTGTGTCCTCCAGGGCTCAAGATAGCTAAGG-TTTAATGTGGAAAAAATGGTTCCACTCTGTCTCACCCCATACCCCAAAATAAACTTA-----------GATTAGGGACAAAAAGCATAATTATAAAAGTTTTGGAAGAAAAACACTAAATGAAGTCTTTGCCCTC--TCAGGAGAGCAGGCAAGAGGCAAATTCCAAAGCC-TATAGGAAACAACTGACTAATTTGGCTTTATAAAAATTTTTTTAAAAAAAGTACTTTTGTGTGGGGAAAAAATAGCACCATTAGAAAGGTAAATTGGC-------------------AACATCAGCAATGTAAACACAAAGTCTTGATACTCATTGTACACAGAGAGCTACCACAGATCAAC-AGAAAGAAGCA---GACTCCCGACAGAAACAGTGAAGGATAAACATGCAGGACATTAG-----------AATGGATAGGAAAAAATATAAGACTTCCCTATTCAACATAACAA----AACTTGAAAAACATTTAAGGACAAAA s canFam1.chrUn 84683569 669 - 91062872 CCCGAGTG---------GCTTACACAAAGGTGCTTGTTCGATCTGCACAAGAATCCTTTGGGGgaag-aagaaactgaggctggagcaggctcagcacatggccgacatgcccgccatggggggccgggcatggattccagcccaggaagcccggctccagggcctgtgctccaagcccgaacgctataATTTGTGTCCTCCAGGGCTCCTGATATCTCAGATTTTAatgtgg-agaagtggttccactctgtctcaccccata-cccaaaatcaactcacata-------gattaaaggcaaaaagtataattataaaagaactggaagggga----tacaagggaaaagtgcacgctgtcaggaaaagggacccgatgcagaatctaag--cgtcacagaaacaacggacagatgggactacggaaag------ccgagg-----acttctgtgggacggatcg--agcagccggaggagcg-aaaatgtccagcgaggaaccaggcacaagcccctgcaa-gtaagcgc-gagtgctggcgtttatcacatgtaaagagcacctgcaagtcagtaaggagaaacca-acagctcaacagaaaagtggcaaaggaGAACGA--GAAAGACGTAA---AACATCTCCATGGACGCAGAGAATTATTCAATCTCC--ACTAATCACAGAAAGGAGAAGTTGGAAGATGTTTCGCAAGA--- a score=43207.0 s hg17.chr17_random 1061246 440 + 2618010 TCTAGTGTTGCTCCAGTGAGGAAGGGATCCACTGACATGCCGTATGCAGGGGTGTGAATGGGAACAGGCTTTTGAGAGGTGATTTGGAGTCTCTATCACAAGTTTAAATGCACCTGCCCTGAGACGCCCATCCCTGGGAAGAGATGTCCGTGCAGATGTCTAAGGCACACGTCTGGAAACGGTGAAGACCTGAGAAGAACAATCCTTAAGGGTCCCAGCCCCTGAGTGTTCACCTTCCAGGGAAACCAGTCCTCATGGAGAACTCAGAG--CCCTGGTGGGGTGGTTGCTGTGGTCTAGGGCCTTTGTCAAGGTTCATCCCAGGCTGGGCTTTTGGAGGGCAGGGAGGCCGCTAGTATCTGGGTGGCTGCCTGAGCCTGCAGATCCCACACCCAGCTGCCCCGAGGAGCTACTGTCCACCTGGTGGAGACTCAGGCTGGGCC s panTro1.chrUn_random 236848265 438 - 240967748 TCTAGTGTTGCTCCAGTGAGGAAGGGATCCACCGACATGCTGTATGCAGGGGTGTGAATGGGAACAGGCTTTTGAGAGGTGATTTGGAGTCTCTATCACAAGTTTAAATGCACCTGCCCTGAGACCCCCATCCCTGGGAAGAGATGTCCGTGCGGATGTCTAAGGCACACGTCTGGAAACAGTGAAGACCTGAGAAGAACAATCCTTCAGGGACCCAGCCCCTGAGTGTTCACCTTCCAGGGAAACCAGTCCTCATGGAGAACTCAGAG--CCCTGGTGGGGTGGTTGCTGGGGTCTAGGGCCTTTGTCAAGGTTCACCCCAGGCTGGGC--TTGGAGGGCAGGGAGGCCGCTAGTATCTGGGTGGCTGCCTGAGCCTGCAGATCTCACACCCAGCTGCCCCGAGGAGCTACTGTCCACCTGGTGGAGACTCAGGCTGGGCC s canFam1.chrUn 84684238 278 - 91062872 TCCAGGATCCATTCGGTGAGGAAGAGC-------ACAAACCATGTGCAGGG-------CACGAAC-----------CAGTGATTTGGAGCCTCTGCCACA--TTTAA--GCGTCTGCACTGAAACTC------------------GCCC------------------------------CGGCGAAGCCCTG---AGCACAGCCCCTTGGGGGC----ACCCTGAGCTTCCGGCCTCTGGGAAC-----TCCGCGCCGACAGCCTGGAGGTCCCCGTTGTGGTGGGGGGGGGGGTCCCGGG----------------------------------------AGGGAGGC-------ATCC------CTGCCTGGGC--------TCCATATCCTGCCACCCTGGGG-------------CCTGCGGAGGC-CTGGCCGGGCC a score=4058.0 s hg17.chr17_random 1061686 45 + 2618010 CAACTCAGAACTAGGAGCAAGGGAGTGAAGCAGGGATGGGGTCCT s panTro1.chrUn_random 236848703 45 - 240967748 CAACTCAAAACTAGGAGTAAGGGAGTGAAGCAGGGATGGGGTCCT a score=11535.0 s hg17.chr17_random 1061731 150 + 2618010 GCAGAGGGGCGGTAGGGTCTGGCCCTCCTGGTCTGGGGG------CCTCCCTGGG-----------CGGGACAGTCCCTGTGTCCCACCCCAACCGCCTGCTGCTTT-TTCTGGA----------CCACCC-------CCCACCCCGTCCCCCGTTCC---CCTCCAGGCTGGGCTTCCCACTGTCTT---------------------------------------------------------------- s panTro1.chrUn_random 236848748 144 - 240967748 GCGGAGGGGCGGTAGGGTCTGGCCCTCCTGGTCTGGGGG-----ACCTACCCGGG-----------CAGCACACTCCCTGTGTCCCACCCCAACCTCCTGCTGCTTT-TTCTGGA-----------CAC-------------CCCCGTCCCCCGTTCC---CCTCCAGGCTGGGCTTCCCACTGTCTT---------------------------------------------------------------- s canFam1.chrUn 84684545 250 - 91062872 GCAGCCGGGCAGCAGGACCTGACCTCCCTGCTCTGGGGAGTGGTGTCCCTCTGGGGCACCCCATCTCAGGGCAAGCCCTGGGG--TACCCCCACCCCTTCCTGTTTTGTTCCAGGGTCCCCCACCCCACCCGGCCCCTCCAGGCCCGGCTCCCATTCCAGTTCTTCATGATGGGCCCCATGCTGCCTCCGTGTCAGGCCGCGGTGTGTCACCGTCCCTGATATCCTGGACCTTCCCGGGGCGCTGCCCTTTC a score=-155.0 s hg17.chr17_random 1061881 20 + 2618010 CCCACTGACTCAGC----------------------------------ATCCGT s canFam1.chrUn 84684795 54 - 91062872 CTCACTGCCCCAGCCCGGGCTCCCGGGAGGCCCAGAGAGGGTAGGAGGCTCCGT a score=398.0 s hg17.chr17_random 1061901 45 + 2618010 CCTTCC----------------CGTGGGGGCA------------GCAGCATCACTGCCTTCTC-------ACGTGGAATC s canFam1.chrUn 84684959 79 - 91062872 CCCTCCAAAGGGGCTCCGAGGTCACGGGGGCAGAGCCTGTGTGGGCAGCGTCAC-GACTTCTCTGGGCTGACTCGAAATC a score=-574.0 s hg17.chr17_random 1061946 26 + 2618010 CCAGGGAGCTGCAGCCTC---------------------------------CACCCTGC s mm5.chr11 177208 26 - 121648857 CCAGGTAGCTGGCTTCTG---------------------------------GCTTCTGG s canFam1.chrUn 84685038 59 - 91062872 TCAGGGAGCCGTGGCCCCGGCTGCATGCATCACCCTGGGATGAATCGCCATGTCTCTGC a score=1407.0 s hg17.chr17_random 1061972 7 + 2618010 CTTCTG-----G s mm5.chr11 177234 12 - 121648857 CTTCTGCTAGGG s canFam1.chrUn 84685097 7 - 91062872 CTTCCG-----G s fr1.chrUn 225534027 7 + 349519338 CTGCTG-----G a score=19359.0 s hg17.chr17_random 1061979 191 + 2618010 AGAGTTCTGTCTCTAATTTTATACGCCCTATCAGC-CTGTTATTCGATCCAGATGCCTG------------TG-AAAT-----TTGCAGCGGGATCGTTCTGTGACGGGCG-GTGGGCA-----GCCCAGGCAGGGCTGCCGTTTCGTGTATCA-GCCCAGAGGTCTGA---GAAGGGTGTGGCTCCTTC-CCTGGGAAACA----ACATGGGACTAG-----TTCCAG----------------A s panTro1.chrUn_random 236849078 207 - 240967748 AGAGTTCTGTCTCTAATTTTATATGCCCTATCAGC-CTGTTATTTGATCCAGATGCCTG------------TG-AAAT-----TTGAAGCGGGATCGTTCTGTGACGGGCA-GTGGGCA-----GCCCAGGCAGGGCTCCCGTTTCGTGCATCA-GCCCAGAGGTCTGA---GGAGGGTGTGGCTCCTTC-CCTGGGAAACA----ACATGGGACTAG-----TTCCAGGTGTTTTTCCACCCAGA s mm5.chr11 177246 179 - 121648857 TGGGCACCTGCCCTAATTTCGTTTGTGACATGAAC-CAATAATTTGATACAGATGTCTG------------TGAAAAA-----TCACAGCTGGATA--CATGGGGTGGATG-GTGGTTG-----G-CCACAAAGGGCTCCTATCTTAAGAACCA-GGAATAAAGACTGA-----AGGGTCTG------TC-CCTGGGGATCA----ACCTGGACC--A-----TTCCAGG---------------- s canFam1.chrUn 84685104 190 - 91062872 AAAGTTCCGTCTCTGATTT-ACACACGCGATCAGG-CAGTTATTTGATCCAGATGCCTT------------TG-AAATGCGCGTTGCACTGGGACCATCCTG-GACGGG-G-GTGG-CG-----GCCCGGGCAGGGTTCCCGCCTCCTGAATCACGGAGCCGGGTCT-------AGGGAGGGGCTCCCTCGCCTGGGAAACA----GTGTGGGCCTCG-----TTCCAGG---------------- s fr1.chrUn 225534034 207 + 349519338 AGAACCTTTGATTATATTTCCTGAACTGGATCAGCACTGAGACCTGGG--AGACGCCCGCTGTCACCGTCCTG-ACAG-----ACGCAGCG-------TGTGTGAGGGGCACGTGCACGTGCACGTGCACGCAGGACGTCGACGGCAGGAACCA-GCACGCAGATCTGATGCTGCACGTGAG------TC-ACTGAGGAACACGTGATTTAGTCTTCAAATGTTCCCAAA---------------- a score=4744.0 s hg17.chr17_random 1062170 61 + 2618010 GCCAACACCCATCACTTTGCAACCCCCTGGGTAAGTGTGCGTGGGGGGGGGGGGTGCTGAG s panTro1.chrUn_random 236849285 57 - 240967748 GCCAACACCCATCACTTTGCAACCCCCTGGGTAAGTGTGCGTGGGGGGAG----TGCTGAG s canFam1.chrUn 84685300 42 - 91062872 TCCAGCGCCC---------CTGGCCCCAGGGACGGCGTGGGGGTCGGGGG----------G s fr1.chrUn 225534241 61 + 349519338 TCCAGTTCATGACTGGTGGCTCGGGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGTCTGGG a score=3191.0 s hg17.chr17_random 1062231 46 + 2618010 CTGCAGCGGGGGGCAGA---GGGCTCAGGCTGGACCACCCCTGCACCTT s panTro1.chrUn_random 236849342 46 - 240967748 CTGCAGCGGGGGGCAGA---GGGCTCAGGCTGGACCACCCCTGCACCTT s canFam1.chrUn 84685342 38 - 91062872 CTG-GGCGTGGGAATGGTCTGGCCCCAGGTT--CCCAACCT-------- a score=19764.0 s hg17.chr17_random 1062277 186 + 2618010 CCACAGTGAGG--CCATCCCCTC---CTGAGCCTCTGGCTCCTGGCCT-------ATCCTCGCTCCCTCACCC----AAGCCCCATGAGGATTCAGTAGCTTGAGAA-------------------------------GGACCCTCTGCTCACCAGAGG-TCACAGTGAC----------TGTGAGAACACCCTCCTGTCCTCTTCCCCCCA-TTCCTTCCTGGACCTTGGGACACTTCTGGGAG s panTro1.chrUn_random 236849388 186 - 240967748 CCACAGTGAGG--CCGTCCCCTC---CTGAGCTTCTGGCTCCTGGCCT-------ATCCTCGCTCCCTCACCC----AAGCCCCATGAGGATTCAGTAGCTTGAGAA-------------------------------GGACCCTCTGCTCACCAGAGG-TCGCAGTGAC----------TGTGAGAACACCCTCCTGTCCTCTTCCCCCCA-TTCCTTCCTGGACCTTGGGACACTTCTGGGAG s mm5.chr11 177520 173 - 121648857 TCACATTAAAG--CTATCTCCC-------AGCTTGGGGCTACTGTTCT--------TCCTCACTATACCA--C----AAGTTACTGCAAATTTCCACTGC-CAAGGA-------------------------------GGAACCTGGGCTCATCTGATT-GCACCATGAC----------ATTG-GGTCATCCTCCT---CTCCCTCCCCAG-TTCCCACCT-GAGCTTAGAGCACTTCAGGAAG s canFam1.chrUn 84685380 239 - 91062872 --ACATGGAGGGCCTGTCCCTCCTCACTCACCCAAGGGCCAGAGGCCCAGTCAGAACCCTCTGCCCGCCAGCCTCGGAGGCCACGTG----CTCAGCGGTGGGTGGACACGGGGCAGCCCTGGACTGTTGGCACATCGGGGCCCCGTGCCCCCCAGAAGCTCACCGTCCCTGCAGTGTGATGTGCTGCTGCCCTGCGCTCCTGTTCCCTCTGCTTCCAGCCTGGACCTCACAACACTTCCAGGAG a score=19449.0 s hg17.chr17_random 1062463 266 + 2618010 GCAGCGCCCTCTCCCAACAG-----------------------------AGTCTTCTCCACAGGGCAGCCACGGGGACTTTGAGGATACCAGGTCCTCA-------------------------CCCAGGCCCCCGTCTCAGAGTCAAAG-----------------CCGTAACT-----------------------------------------------CCCATAGCACAGTGGCCTTCGAG-------ATGCCCTCTTG---TCACCC-------------------GCCAAGGGGTGC-CGGCACT-------------------------GAGTGCGAGGATTTGACTT---------------------------CCCA----------------------CAAGAGGAAAGCAGGTTCTTTCCCAGGGGCCATGCCAGGCCCCAGCACCTCTGCTGACCTGGCTCAGTGCGTCGGGGAAA s panTro1.chrUn_random 236849574 261 - 240967748 CCAGCGCCCTCTCCCAACAG-----------------------------AGTCTTCTCCACAGGGCAGCCACGGGGACTTTGAGGATACCAGGTCCTCA-------------------------CCCAGGCCCCCGTCTCAGAGTCAAAG-----------------CCGTAACT-----------------------------------------------CCCATAGCACAGTGGCCTTCGAG-------ATGCCCTCTTG---TCACCC-------------------GCCAAGGGGTGC-CGGCACT-------------------------GAGTGCGAGGATTTGACTT---------------------------CCCA----------------------CAAGAGGAAAGCAGGTTCTTTCCCAGGGGCCATGCCAGGCCCCAGCACCTCTGCTC-----GCTCAGTGCGTCGGGGAAA s canFam1.chrUn 84685621 476 - 91062872 GCCCTTCCCTCTGCCATTAGTTGTCCTCTCTCTCCTGGTGGCCCCGTGAGGTATTCTCCACGAGGAAGCC-CAGGGACACCGTGGACACCTGGGCCAGATGCCATCTCCTGTGCTGCCTGCCTCCCCAGGCCTCAG-CTCAGGGTCAAAGCCACACCCCGGATGGCCCCGCAACTCTGAGGACCCTCAACACCCCCCATGGGCCCACCCTACCCCAACACCCCCCATGACCCAGGGGTCCACGGGACCCTCAACACCCCCATGGGCCCACCCTACCCCAACATCCCCCATGACCCAGGGGTCCACAGCACCCCACACATCCCTGAGAGGAAGCAGGGAATCCAGAGAGGTGACCCACGGTTGGGGACAGAGAGGGGCACTCACCCATCCACTCGCCCTCCCTCCCTGCCCAGCAGAAGGCA---CCGTCCCCCTTGGTGACGCCAGGTGCCCACCCCTCTGCAGAGCAGTCTCAGCAAGTG------- a score=92772.0 s hg17.chr17_random 1062729 449 + 2618010 AGGGGTGCCCAGCCTCCTCTGTGTCTCCAAGTCAG----GGGCATCCCAAGGCAC---CTCACTTGGGTGCTCTCAGAAAAGACAGCCCTGAATCTCAGAGCCACCAAAGGCAGGCAGGATTCGAGCCTGGCCTCAAGCATGACTCTGGAACGTAAAGAGGAAAAGACGATTTAGGTTAACGTGGGACACAGCCGGTTTCCCG-CCCAAACCAAGGTCCAGGGGGACTTCTCATCCCCAGCAGGGGGTGTGTCTACAAAGAACAACCACAAACTGGGGTCATTTCCAAAAGAAACACTCCCGGCTTCCTCCAGGGGCAGAGACCGAGGGGTCTGGGGGAGGAGGCTGGGGTGGGCAGAGGCCCGAGGTAGGGAGGTCCAGGGGCACATCCCAGG----TCTGGCAGCATGGGCCGG----GCCCTGCTGGGAGGGGGCTGAGGACCCCAGA-GCCTAGGCCTGTCC s panTro1.chrUn_random 236849835 449 - 240967748 AGGGGTGTCCAGCCTCCTCTGTGTCTCCAAGTCAG----GGGCATCCCAAGGCAC---CTCGCTTGGGTGCTCTCAGAAAAGCCAGCCCTGAATCTCAGAGCCACCAAAGGCAGGCAGGATTCGAGCCTGGCCTCAAGCATGACTCTGGAATGTAAAGAGGAAAAGACGATTTAGGTTAACGTGGGACACAGCCCGTTTCTCG-CCCAAACCAAGGTCCAGGGGGACTTCTCATCCCCAGCAGGGGGTGTGTCTACAAAGAACAACCACAAACTGGGGTCATTTCCAAAAGAAACACTCCCAGCTTCCTCCAGGGGCAGAGACCGAGGGGTCTGGGGGAGGAGGCTGGGGTGGGCAGAGGCCCGAGGTAGGGAGGTCCAGGGGCACATCCCAGG----TCTGGCAGCATGGGCCGG----GCCCTGCTGGGAGGGGGCTGAGGACCCCAGA-GCCTAGGCCTGTCC s mm5.chr11 177959 438 - 121648857 AAGGGTGTCCAG----CTCTA-----CCACCTCAGAACTGAACAGCATAAGGCATTCACTCACTGGAGTGTCCTAAGAGAAGCCAGCCCTGAATCCCAGAGTGTCCAAAGGCAGATAGGATCCAAACTTGGCCTCAAATTTAAAGCCTGAAAGTTAAAGAACAAATACTACTTGGTGAAATGT-CGACAGAGCACGTGTCTTACCCCAAACCAAGGCCTAGGGAGACCTCTCTTCCCCAGCTGAGAGCGTGTCTACCAAAAACAACAACAAACTGGGGTCATTTCCAAAAGACATGGCCCTAGTTTCCTACAGGGGCCAAGGCTGAGGGGATTGACTAAGAGAGCTGGG------AAGGTCCCTAG---AGGAGGTT--GGAGCACAAACTAAGCCACCCTGACTGAAATGGGAGG-------TTGCTAGGAGAGAGACATGGGTGTCAGGCCCCTGAGTCTGTTT s canFam1.chrUn 84686097 384 - 91062872 AGGGGTACCGGACCTCCTGCCCGCC-CCACCTTG-----GAGCACCCCAGGCCAC---CTCGCCC-AGTATTCTCAGAGGAGACA------AGTCTCAGAGCCACCAAGGG-AGGCAGGATACATGCCTGG-----------------AACTTTAGAGTAAAAAATACCATTTAGGTGAACGT-GGCCACAGCCCATTTCCTGCCCCAAACCAAGGTTGAAGGCAGCCCTCCATGCCCAGCTAGGGGTGAGCCTGCAAAAAATGACAGCAAACCGGGGTCGTGTCCCAAAGACA-----CCGGCCT------GGGGGAAGGGCTAGGAGTTCTGGGGGAG--------------------CCCCAAGGGGTGAGTGCCAGCGGTGC--CCCAGG----TGGGGGCGGGTGGTGGGGGGTTGTCCTGCTGGGA-----CTGAGG----CAGG-GTCTACACCGATCC a score=7107.0 s hg17.chr17_random 1063178 81 + 2618010 TAAGCCTGTCCTTAGCCGGAGAGCCTCGGCCCTGTGCT-GGCAGCAGGGTCTTCACTCCTTGCCAGCTCCACATAGGCAGTC s panTro1.chrUn_random 236850284 81 - 240967748 TAAGCCTGTCCTTAGCCCGAGAGCCTCGGCCCTGTGCT-GGCAGCAGGGTCTTCACTCCTTGCCAGCTCCACATAGGCAGTC s mm5.chr11 178397 66 - 121648857 CTAGGCATCTATCAGTACAAGAGCATCCATCCTGAGCCAGGCAAAGAAGTCATC--------CTGGATCCTCA--------C a score=92226.0 s hg17.chr17_random 1063259 974 + 2618010 AGGCTCAGGCCAGCCCCCAGCCAACAGCGGCTCCCAACACGCCCTGCCCTGTGGGAGATGCC-AAGCTGGCATCCCTCTCGGGCCA---GGCCAGGCCTCCTGGTGGTGTGGCCAGCGCTGGCACACAGTCCTGAATTCCTTCAAAGAACAACAAACTGAAAATCCAGCTGAGTTCAAATTTGCCCAAATTCCCA-TTTGA----------AGTTTCCCTGTCCCAGAGGGTGGTA---CCCGCCCCACCCCGGTGGGATGTGGTGAAGGCAGTGGCTCCTCCCGGCCA---TGAGGCATAAACAAATACCGCCTGGGCCACAGGGG--CTTGGCCGGAGCCCTTGACTCAGCCCCACCCAGGCCCCCTCCTGCACCTC-------GACC--------------GGCTCCTGGGGCTCCATGACCCACAAGCCAGCA-AGTTTCTCAGCTGCCCTGACACAGCCTAAGACGGGTCT-CAAG--TCCCTGTCGTGCC-CGTCCCAGGAAACCGGT--CTTCACCTAGTCAGTCCCAGAGACCTTGCTCCTCACGCCCAAGGTGAGCAGCCCCGTGTGATTCTCAATCTTTCAGGGTTGACCCTGACCTAACCCACATCTCCACCTCAAGTCTCCCACTCCAGTCTGAGAAACCC--TCCCCGCTCCAGCCCCTAagcccagcccagcccagcccCGCAGGGCCTCCTGACTCACCC-AGATCTGTCC--------------------CCACAAGAGGCCTCCTCACTCCTCAGTGGGAG----ACTCCGTGGCGTGCAGG-CTCCAGGGGCTCTGTGGTCC-CGGAAGC---------------------GAAGGTGGGGCTGGAGGAGGAAGC---------------------GAAGCGGATGTCACCTTCCTTG----AGGGATTCTGGAGCCGCTTCAGTGGACATCTTTGCCCTCTGACCTGAGCCTCTGATTGGGTCATGGGTGGCCAGCAGCACAGCTGAGCCTGTGTCCTGTGCAGCCCCAGCCCCTCCAGCGGGATCACT-----GGCCCGTTGGGGATGACAGAGAGAC--ACtc-cccgtcct-----ctggagcaggggtcc s panTro1.chrUn_random 236850365 968 - 240967748 AGGCTCAGGCCAGCCCCCAGCCAACCGCGGCTCCCAACACGCCCTGCCCTGTGGGAGATGCC-AAGCTGGCATCCCTCTCGGGCCA---GGCCAGGCCTCCTGGTGGTGTGGCCAGCGCTGGCACACAGTCCTGAATTCCTTCAAAGAACAACAAACTGAAAATCCAGCTGAGTTCAAATTTGCCCAAATTCCCA-CTTGA----------AGGTTCCCTGTCCCAGAGGGTGGTA---CCCGCCCCACCCCGGTGGGATGTGGTGAAGGCAGTGGCTCCTCCAGGCCA---CGAGGCATAAACAAATACCACCTGGGCCACAGGGG--CTTGGCAGGAGCCCTTGACTCAGCCCCACCCAGGCCCCCTCCTGCACCTC-------AACC---------------GCTCCTGGGGCTCCATGACCCACAAGCCAGCA-AGTTTCTCAGCTGCCCTGACACAGCCTAGGACGGGGCT-CGAG--TCCCTGTCGTGCC-CGTCCCAGGAAACTGGT--CTTCACCTATTCAGTCCCAGAGACCTTGCTCCTCACGCCCAAGATGAGCAGCCCCATGTGATTCTCAATCTTTCAGGGTTGACCCTGACCTAACCCACATCTCCACCTCAAGTCTCCCACTCCAGTCTGAGAAACCC--TCCCCGCTCCAGCCCCTAagcccagcccagcccagcccTGCAGGGCCTCCTGACTCACCC-AGATCTGTCC--------------------CCACAAGAGGCCTCCTCACTCCTCAGTGGGAG----ACTCCGTGATGTGCAGG-CTCCAGGGGCTCTGTGGTCC-CGGAAGC---------------------GAAGGTGGGGCTGGAGGAG--------------------------GAAGCGGATGTCACCTTCCTTG----TGGGATTCTGGAGCCGCTTCAGTGGACATCTTTGCCCTCTGACCTGAGCCTCTGATTGGGTCATGGGTGGCCAGCAGCACAGCTGAGCCTGTGTCCCGTGCAGCCCCAGCCCCTCCAGCGGGATCACT-----GGCCCGTTGGGGATGACAGAGAGAC--ACtc-cccatcct-----ctggagcaggggtcc s mm5.chr11 178463 855 - 121648857 AGACCCAGGTCA-------------------------------CTGCTCTTCATGAGGAGGT--TGCTAGCATCCTTACC---CTG---AACCAAGCCTCTGTGTGGTATGGCCAGCTCACACCCACAGTGCTGAATTCCAACCAATATCTAT------AAAACCCAACTGCTTCCAAATCTCTTCACATCTCCT-CATAGAGAACATCTCAGATTCCCTGTCCCAGATTATACTACTTCCTGCCCCA------TGGGACAAGGTGAAGCCA-CAGTTCCTCTTAGCCA---CGACACA--------------CTGAACAAGAAAAA--CTCAGCAGG-GCTAATAGCT--GACCTACTCTGGCTCCTACCTCTCCCTCCTTAAATGGCCTGAATATGCTTCCTGGCTCCTGGGGCTTGCTGAACCACACTTAAAAATAGTTGTTCAAATACCCAG--GCAGCTTACATCGAAACTGTGTG--TCTCCATATAGCCATAGCCCTGGTGGCAGGT--CCTCTTCTAA-----CTCAAAGACTTTGACCCTTA---CCAGGA--AATAAC-------------------TTCTGGAAAGACTCT--------CTATATCTGGACCTT--GGCTCAGTCCCCAGCCATAGAACT-----------------------------CCCAGGCCAG--TGGTTAGGGCTCCTGACACACCC-AAGCCTCTCC-----------------------CAAAGGATCTGATATATTAGCAG-----------CTCAGAGGCATGTAGG-C-CCACTAGTTCTGTATTCCTCGGGGGTCATTAACAGTAGTGGTCAGTAGATAGTGACATTACAAAAAAGGAC---------------------CAAGAGTGTATGG---TCCTTA----TGAGACATTAGTGCCACACCAATGAGC-CCTTCACCCTTAAACATGGGCACATGAATTCATC-----TGGTCAGTTATAGGACTTTGCCTCTGTAC------------------------ATAATATA-----AGTCTGTTGGGGACACTATAAGGGC--ATTCATTCACTGT-----TCTTAGATGGGGTGC s canFam1.chrUn 84686513 914 - 91062872 GGGCTCAGACTA----------------------------GCCCTGCCCTGTGGGAGGGGCCCACGCTGGCAGCCCGCACCCCCCACACACCCAGGCC------------GGGCGACACTGGCCCGCGGTCCTGAATTCCATCAAAAAACAACAAACTAACATTCCAGCTGAACCCAAACGCGCCCAAATTCCCACCCTGG----------AG--------------------------CCCT-----------TGGCAGG------------TCCCTTCTCCCTGCCACCTCCAAGCAGAAACAGAC----CCTTGGCTGGTggggcccccggcccgggccccAGCCCACATCCCACCT---CCACCTCCTGCCCTTT--GCAGGGGCC--------TCGCCTTCCTCCCGGGGCTCG-TGACCCACAGCCAGGCT-AGTTTTTCAGCAGCCCCAACACAACCCACAGTAGGGCT-GGGGTCTCCCCACCCCGCC-CCACCCAGGAAGTCTGCTACCTGGCCCAGCTCCCCTTGCAGACCTTGCTTCTCACGCCCAAGGTGAGCGACCCCCTGCCACTCTGGGG--GCCTGGGTGGGTCCT--------CTG--------------ATCTCACACCCCCGCCGGAGACACCTGGCCCCTCCTCTGGCCTC--------GCCTGGGTCAGGTCC------CTTCCTGGCTCACCCAAGAGGTGCCCAGGCGGAGAGCACCTGCTGACTGGGAAGAGCCTCTCAGCCCCTCCGGGAGCGGTGCACCCTTGGACCTACGGGACCTCCCTCGCCCTCACGTCC-----------------------------ACCGCCTGGGTTGGGAGCGGCGACCCCAGGCTCAGCCCATGTTTGAAAGCAGCTGGGGCCCTCCCAGGCCTTGGGGCGCCCAGGCCCCGCTTGTGAAC--CCTGCCGGGCTGACCCAGGCCCCAGGGGCGGGCGTGG-TGCCCGAGAAGGCACCCAGGTC----ACCAGGGCAGC----GCCCACGCAGTGTGCTCATTCCAGAACGCCCTTGGGGGTGAGGCACAGCCTGGCTC-CCCAACTTCTACCCTGCAGCGGCAGCCC a score=27052.0 s hg17.chr17_random 1064233 367 + 2618010 ccaggctgtggtctgttaggaaccggccgcgcggcgggaggtgagcggtggaccggcctg--accctgagctccgcctcctctcggatcagcggcggcattcacttctcacaggagcgtgac---------------ccctattgtgaact--gcacgcaagggatctaggtt-------gtccgctccttatg-agaatctaatgcctgatgatctgagagggaaacc-atcccttcttctctccaacacccacagaataagtgtcttccacaaaacctgtccctggtgtcaaaag----ggttggggaccactgCTCTGGTGGGAAGGTGCCAGG------CCCCTCAGCCCCTTCCAGGAGACTGAGAAAGGGTTCAGGAAACC--------TGGGGGGCCGGCTGGTTC s panTro1.chrUn_random 236851333 384 - 240967748 ccaggctgtggcctgttaggaaccggccgcgcggcgggaggtgagcagtggaccagcctg--accctgagctccgcctcctctcggatcagcggcggcattcacttctcacaggagcgtgactgcgctcctattgtgtcctattgtgaactgcgcacgcaagggatctaggtt-------gtctgctccttatg-agaatctaatgcctgatgatctgagagggcaacc-atcccttcttctccccaacacccacagaataagtgtcttccacaaaacctgtccctggtgtcaaaag----ggttggggaccactgCTCTGGTGGGAAGGTGCCAGG------CCCCTCAGCCCCTTCCAGGAGACTGAGAAAGGGTTCAGGAAACC--------TGGGGGGCCGGCTGGTTC s canFam1.chrUn 84687427 335 - 91062872 --------TGCCC-------ACCCCACCCCGT---------------GTGCCCTGCCCTGCCACCCCTGGCCTGACGCCCCCCAAGGGCAGCCTGGGCCTCCTCGTC---------CTTGGT---------------CCCTGCTCCGTCCT--GACCTCAGAAGCCCTGGCTCCAGCCGAGACCGTGATCCAGGCAGAAGCTGGTGCCCCAGCCTTTCAGGGGGGGCCTGGGGTCCTCATCTCCGCGGGA-GCACGGAGCAGG--------------CCTG--CCTGACAGCAAAGGAGCTGGCCGGGGAGCAGCGCTGCCTCTGGAAGCTCTGAGGACACCATCCTCGGGCCTCCTCCGGGGTGCTGC-----TGCCCGAGCAATCCATCCCGACAGGGGAGGGTCTCTGTC a score=84001.0 s hg17.chr17_random 1064600 547 + 2618010 ACCACCCT---CCCCCCCACCCTTGGCTCACCCAAG---------TCAGGGGCTCCACCCCAG------------------CAGGCAGAGCTGACAACTCACAGGG---GTGTCTGGGGAGGGCAATGTCCACTGCCATCTGCCAGGTCACGGGGGG---ATGCTGGAGGTCTGC----TCTACCTCAGTTCCCCTGG-------CGTGGGTGCCTGGGGCTTCAGATTCAC-CCTTGTGTGGAGGTGGGGAGGCAGGATTGGGGAGGACCCTGAGTCT-CCCAGGCAGGCAGCCTGGCACCGGGTGGGGGACTGTGATCCAGCAAACCTGCTCATTCTTGTGGGCGG-CTAACGGCTTTT-ATTTCAGGACACCCACATGTGTTAAAACAGGAAATAAAGTATACGAGAAACAGCA-CCCCCACACACTCCCGGGTAAGGAGGCTTTTCCTCAGTCC------TCCACTCACACCCACACAGCCCCAGGAGGGACCC-CTAGGCACAGCCCACACCTCCACATCCCGTCCAACCCCCACGTTCCTGGGCTGCTCTTTCTCTGAAGCATTTTAA--CACACAGGCGTGAGTGCACATACACACACACG---- s panTro1.chrUn_random 236851717 546 - 240967748 ACCACCCT----CCCCCCACCCTTGGCTCACCCAAG---------TCAGGGGCTCCACCCCAG------------------CAGGCAGAGCTGACAACTCACAGGG---GTGTCTGGGGAGGGCAATGTCCACTGCCATCTGCCAGGTCACGGGGGG---ATGCTGGAGGTCTGC----TCTACCTCAGTTCCCCTGG-------CATGGGTGCCTGGGGCTTCAGATTCAC-CCTTGTGTGGAGGTGGGGAGGCAGGATTGGGGAGGACCCTGAGTCT-CCCAGGCAGGCAGCCTGGCACCGGGTGGGGGACTGTGATCCAGCAAACCTGCTCATTCTTGTGGGCAG-CTAACGGCTTTT-ATTACAGGACACCCACATGTGTTAAAACAGGAAATAAAGTATATGAGAAACAGCA-CCCCCACACACTCCTGGGGAAGGCGGCTTTTCCTCAGTCC------CCCACTCACACCCACACAGCCCCAGAAGGGACCC-CTAGGCACAGCCCACACCTCCACATCCCGTCCAACCCCCGCGTTCCTGGGCTGCTCTTTCTCTGAAGCGTTTTAA--CGCACAGGCGTGAGTGCACATACACACACACA---- s mm5.chr11 179689 530 - 121648857 ACAAGGCT---GACCTTTGCTCTTACTTTACTCTGA---------TCAAGGG-TCTACCTAGC------------------CCTGAAGAACTGACACAACATAAGGTCAGCATCCTGTCAGAAGATTACCTGCTGTAACCT----------AAAGAG---ATGCTTTGGATGTTCCGTATCTTTCTCTGCTTCTTGGGACCAGAACCTGAGTGCCTGGGGCTCCAGACTCCCACCATGT-------TGAGAAGACAGTCCTGGGAAGGGTTTCATACCTCCCCAAACAGGCAG-------TGGGGTAAAGTTCTGACCTTAGCCAAACCTGCTTG-ACACATGAGAAGTCTTGCAGCTTTC-ACTTCAGGATACCCACATAAGTTAAAGTAGGAATCTGAGTATGTGAGAAACAGCA-TCCCCATATACGCATG-----GGAGGCTCTTCTTCTGGTCTTATGTCCTACCTGCTCCTGTACAGCAATAGAAGGGATCCACCAGGCACAGTGTA-----CTGCATTCC--TCTGCCCCCA--TTTCTGG---GATTTTTCTCTGAAGCTGTTTAAGGAGAACATATGTGCATATGTAAGCATGTACCCA---- s canFam1.chrUn 84687762 534 - 91062872 GCCACCCTTCACCCCCTGACCTGGGGAGCACCGAGGCCCGGCCTCCCAGGGCAGCTCCTCCAGAGGCCCGGGGAAGAGGTTCAGGGAACCCAGAGACAGCGCGAGG--------CTGGGTGAGCCGGGCCTG--GGCACTT-------CACGGGGGGGCCGTGAGGGGAAGGTCG----CCCCCCTCGGTCCCCAACC-------CATGAG-GCATAGGTCCTGGGGCTCA--GCTGAT-----------------GGCCGGGGGAGCACCCC--GTCT-CCAGGACATGCAG--------CGGGGGAGGGTTTGAG-CCCAGCAATCCTGCTCATTCTCATGGGGAC-----CAGTTTTTAATTTCAGGACATTCACATGTGTTACAACAGGAAATAAAGTGTGTGAGAACCAGCATCCCCCACACACTCCCG--GCAGGAGGCTCTTCCGGGGGCC-TCGGCTCCACCCGCCCCCACACGGCCCCGCGGGGAGACC-CCAGGCCCGGC--------CCGCGTCCTGCCCAAGGCCCGCATTCCTGGGCTGCTTGTCCCCTGAAGCGCTTAAA-Ccacacacatatgcacacacgcacactcacacacacg a score=100.0 s hg17.chr17_random 1065146 1 + 2618010 G s danRer1.chr13 15829285 1 - 20521091 G a score=5136.0 s hg17.chr17_random 1065147 19 + 2618010 TTTACCAACCATGCTTGGT s panTro1.chrUn_random 236852263 19 - 240967748 TTTACCAACCATGCTTGGT s mm5.chr11 180219 19 - 121648857 TGCACTAACAATGTGTGAC s danRer1.chr13 15829286 19 - 20521091 TTTACCAGCGACATCTGGT a score=0.0 s hg17.chr17_random 1065166 9 + 2618010 CCCTGTAGC a score=300.0 s hg17.chr17_random 1065166 1 + 2618010 C s panTro1.chrUn_random 236852282 1 - 240967748 C s mm5.chr11 180238 1 - 121648857 C a score=1869.0 s hg17.chr17_random 1065167 8 + 2618010 CCTGTAGC s panTro1.chrUn_random 236852283 8 - 240967748 CCTGTAGC s mm5.chr11 180402 8 - 121648857 CCTCTAGC a score=1551.0 s hg17.chr17_random 1065175 10 + 2618010 GTCTCCTTCC s panTro1.chrUn_random 236852291 10 - 240967748 GTCTCCTTCC s mm5.chr11 180410 10 - 121648857 TTCTTACTCC s danRer1.chr13 15829305 10 - 20521091 GGTTTGTTCG a score=0.0 s hg17.chr17_random 1065185 2 + 2618010 AC a score=311.0 s hg17.chr17_random 1065185 2 + 2618010 AC s panTro1.chrUn_random 236852301 2 - 240967748 AC s mm5.chr11 180420 2 - 121648857 AT a score=3175.0 s hg17.chr17_random 1065187 31 + 2618010 CTGGGGCAGGTGACATAAGGGGTCAGGTGCC s panTro1.chrUn_random 236852303 31 - 240967748 CTGGGGCAGGTGACATAAGGGGTCAGGTGCC s danRer1.chr13 15829315 20 - 20521091 CTGGTAAACATGACA-----------GAGCC a score=2952.0 s hg17.chr17_random 1065218 13 + 2618010 CGCTGACTCAGGA s panTro1.chrUn_random 236852334 13 - 240967748 CGCTGACTCAGGA s galGal2.chrUn 65377228 13 - 165033910 CGCCGGCTCCGGC s danRer1.chr13 15829335 13 - 20521091 CCCCCTCTAAGGA a score=1446.0 s hg17.chr17_random 1065231 16 + 2618010 CTTGTGGTTCCTGGAA s panTro1.chrUn_random 236852347 16 - 240967748 CTTGTGGTTCCTGGAA s galGal2.chrUn 65377241 14 - 165033910 C--GTCGTCACCGGGG a score=0.0 s hg17.chr17_random 1065247 86 + 2618010 CtctcaaactgtggctgcatgagtcccaccctgagggctgatggggtggacccacagagtgctggacctgccccaaacctcagagC a score=1232.0 s hg17.chr17_random 1065247 15 + 2618010 Ctctcaaactgtggc s panTro1.chrUn_random 236852363 15 - 240967748 CTCTCAACCTGTGGC a score=11377.0 s hg17.chr17_random 1065262 71 + 2618010 tgcatgagtcccaccctgagggctgatggggtggacccacagagtgctggacct-gccccaaacctcagagC s panTro1.chrUn_random 236852378 71 - 240967748 TGCATGAGTCCCACCCTGAGGGCTGTTGGGGTGGACCTACAGAGTGCTGGACCT-GCCCCAAACCTCAGAGC s mm5.chr11 180503 70 - 121648857 TGAGTTAGTCCCACTTTGCAGGCTCATGGAGTGAAC--ACAGAATACCAGCCTTCACCCCCAACAGCAGAGC a score=1507.0 s hg17.chr17_random 1065333 12 + 2618010 ATGTCGGGCTGA s panTro1.chrUn_random 236852449 12 - 240967748 ATGTTGGGCTGA s mm5.chr11 180573 11 - 121648857 ATGTTAGGCTG- s galGal2.chrUn 65377255 12 - 165033910 ATGAAGTGTGGG a score=-1134.0 s hg17.chr17_random 1065345 13 + 2618010 ATGTCCAGAC-------ACC s panTro1.chrUn_random 236852461 14 - 240967748 ACGTCCAGTC------TTCC s mm5.chr11 180584 12 - 121648857 -TATCTAGGT-------GCC s galGal2.chrUn 65377267 20 - 165033910 ACGTCGGCACAGCGCTGCCT s fr1.chrUn 144947128 13 + 349519338 ATGTCTTGGT-------CCT a score=1646.0 s hg17.chr17_random 1065358 17 + 2618010 GAGGAGCTTCGGGCAAG s panTro1.chrUn_random 236852475 17 - 240967748 GAGGACCTTCAAGCAAG s mm5.chr11 180596 16 - 121648857 AAAATGTCAAGATCAG- s galGal2.chrUn 65377287 17 - 165033910 GAGGAGGCTGAGGGAAG s fr1.chrUn 144947141 17 + 349519338 GAGGAGGTCCTGGTCAT s danRer1.chrFinished 23800291 17 - 40167097 GAGGAGCTAATGGTAAG a score=-3642.0 s hg17.chr17_random 1065375 32 + 2618010 GTCAGGGGCCAGGCATCGCGACAG----TGTCCCCA s mm5.chr11 180612 32 - 121648857 GTCAGGATCTGAGCATCACAAAAG----AATCCAAA s galGal2.chrUn 65377304 30 - 165033910 AGGAGGGACC--GCATCAGAGCTG----GGACGACG s fr1.chrUn 144947158 36 + 349519338 GAGGAGGTCCTGGTCTCGTGGAGGTCTTGGTCCTGA s danRer1.chrFinished 23800308 29 - 40167097 GGGAGGGCCTACTGATGATGAAGG----GGCAG--- a score=-19589.0 s hg17.chr17_random 1065407 54 + 2618010 GGCAGCT-------GACCAG-GAGAGGACAAGGCAG-------CTGAGAGGGCCAG--G-----GGAGGGGGTGTG------ s mm5.chr11 180644 52 - 121648857 TACAACT------CAATCAGTGGGTGGTTAA-------------TAATGGAGTCAGATG-----TATGAGGTTATA------ s rn3.chr5 15355769 53 - 173106704 GGGAGGT-------GCCGGG-GGACGGGTGAGGCGG--------GCCGGGAGTGCG--G-----GAAGCGGCGCTG------ s galGal2.chrUn 65377334 67 - 165033910 TGGAGGTGGGATGGGACAGG-GAGGGGACAGCGCAGGGAAGGGCTGAGGGAG-CAG--A-----GAGGGGGTGGTG------ s fr1.chrUn 144947194 61 + 349519338 -GGAGGT---CCTGGTCATG-AGGAGGTCCTGGTCT--------TGTGGAGGTCCT--GGTCCTGAGGAGGTCCTG------ s danRer1.chrFinished 23800337 54 - 40167097 ---------GGCTACTGTAG-AGGAGGACGAGCTAC--------TGATAAAG---G--G-----AAGGAGCTACTGATGATG a score=-21985.0 s hg17.chr17_random 1065461 65 + 2618010 GGAATG--CAGGGCTAGTG----TCAGCAGGCCCAG------CTGGGTGTGTGTCTCCTGGGAATCT----GCTACAGGGG s mm5.chr11 180696 47 - 121648857 CAGATG---AGGGGTA---------------------------TGAGATTATATCACCTGGGGATCT----GCCATCATGT s rn3.chr5 15355822 67 - 173106704 GGGATGCGCAGGGCCGGTC----TCCGAGAGGGAAG------CAGGGGCCAGGCTTGGTGGAAGGCT----GCAGCAGGGT s galGal2.chrUn 65377563 47 - 165033910 aTATTG--CAGGGATG------------GGATGATG------CAGAGAG----------GGGACAAC----GCAGCAGAGA s fr1.chrUn 144947255 79 + 349519338 GTCATG--AGGAGGTCCTGGTCATGAGGAGGTCCTGGTCTTTTGGAGGTCCTGGTGTCTGAGGAGGTCCTGGTCATAAGGA s danRer1.chrFinished 23800391 69 - 40167097 AAGGGG--CAGGGCTACTGTAGAGGAGGAGGAGCTAATGGT-GAAGGGGAGGGGCTACTGAG---------GATGAAGGGG a score=210.0 s hg17.chr17_random 1065526 3 + 2618010 CCC s fr1.chrUn 144947336 3 + 349519338 TCC s danRer1.chrFinished 23800460 3 - 40167097 CAC a score=1218.0 s hg17.chr17_random 1065526 3 + 2618010 CCC s mm5.chr11 180743 3 - 121648857 CTC s rn3.chr5 15355889 3 - 173106704 CCC s fr1.chrUn 144947336 3 + 349519338 TCC s danRer1.chrFinished 23800460 3 - 40167097 CAC a score=-5022.0 s hg17.chr17_random 1065529 26 + 2618010 TAGCACTGCGCTGTGCTCCCCGGGGG-- s mm5.chr11 180746 25 - 121648857 CAGCACTG-GCCCTACTCCTGAGAGG-- s galGal2.chrUn 65377615 26 - 165033910 CAGTGCAGGGATGGGGACACTGCAGG-- s fr1.chrUn 144947343 26 + 349519338 CATGAGGAGGTCCTGGTCATGAGGAG-- s danRer1.chrFinished 23800463 20 - 40167097 --------GGCTACTGTAGAGGAGGAGG a score=0.0 s hg17.chr17_random 1065555 15 + 2618010 ACCCCCACCCACCCA a score=-640.0 s hg17.chr17_random 1065555 4 + 2618010 ACCC---- s fr1.chrUn 144947369 4 + 349519338 ----GTCC a score=-534.0 s hg17.chr17_random 1065559 11 + 2618010 CCACCCACCCA--- s mm5.chr11 180771 9 - 121648857 -----TAATCAGTG a score=0.0 s hg17.chr17_random 1065559 11 + 2618010 CCACCCACCCA a score=-2396.0 s hg17.chr17_random 1065570 11 + 2618010 -------GGCCAGGGCCA s mm5.chr11 180780 11 - 121648857 -------GACCAGATCTA s galGal2.chrUn 65377641 10 - 165033910 -------GATGGGGACA- s danRer1.chrFinished 23800483 13 - 40167097 GGCTAATGGTGAA----- a score=-241.0 s hg17.chr17_random 1065570 16 + 2618010 GGCCAG-GGCCAGGGTG- s danRer1.chrFinished 23800483 18 - 40167097 GGCTAATGGTGAAGGGGA a score=-2375.0 s hg17.chr17_random 1065581 5 + 2618010 GGGTG- s mm5.chr11 180791 5 - 121648857 CCAGT- s rn3.chr1 179764233 5 + 268121971 GGGTG- s galGal2.chrUn 65377654 5 - 165033910 CAGAG- s danRer1.chrFinished 23800496 5 - 40167097 -GGGGA a score=-324.0 s hg17.chr17_random 1065586 1 + 2618010 G s mm5.chr11 180796 1 - 121648857 A s rn3.chr1 179764238 1 + 268121971 C s galGal2.chrUn 65377659 1 - 165033910 A a score=0.0 s hg17.chr17_random 1065586 1 + 2618010 G a score=100.0 s hg17.chr17_random 1065586 1 + 2618010 G s danRer1.chr13 15829348 1 - 20521091 G a score=-7991.0 s hg17.chr17_random 1065587 59 + 2618010 TGGCTCCGTGTAGTGGCCAGTGCTGTTCAGGGT--CTGGGG----------------------------GCTGGTACAGGGGAGGAGCT s mm5.chr11 180797 64 - 121648857 ATACTCCACACAGAGGCCAGTACTAAGCAAGCTAGCTAGGGAAA-------------------------GCTGTTAAAGGAGAGGCACT s rn3.chr1 179764239 69 + 268121971 TGGAGCAGTGGAGGTGCTGGAGCAGTGGAGGTG--CTGGAGCAGG------------------GGAGGTGCTGGAGCAGTGGAGGTGCT s galGal2.chrUn 65377660 58 - 165033910 GGGGACATTGCAG-GGATGGGACATTGCAGCAG--CGAGGG----------------------------GACAGCACAGAGGGGACATT s fr1.chrUn 144947373 87 + 349519338 TGGTCTTGAGGAGGTCCTGGTCTTGTGGAGGTC--CTGGTGTCTGAGGAGGTCCTGGTCATAAGGAGGTCCTGGTCATGAGGAGGTCCT s danRer1.chr13 15829349 56 - 20521091 TGGCTTCCAGACACTCCTAATACTGTTCAGGCG-----GGA----------------------------GGTGGAGCGGAGGCGGAACT a score=-1690.0 s hg17.chr17_random 1065646 3 + 2618010 GGG- s galGal2.chrUn 65377718 1 - 165033910 G--- s fr1.chrUn 144947460 2 + 349519338 -GG- s danRer1.chr13 15829405 3 - 20521091 -GGG a score=887.0 s hg17.chr17_random 1065646 3 + 2618010 GGG s rn3.chr1 179764308 3 + 268121971 GGA s fr1.chrUn 144947460 3 + 349519338 GGT s danRer1.chr13 15829405 3 - 20521091 GGG a score=-31.0 s hg17.chr17_random 1065649 1 + 2618010 A s danRer1.chr13 15829408 1 - 20521091 G a score=0.0 s hg17.chr17_random 1065649 1 + 2618010 A a score=29.0 s hg17.chr17_random 1065649 1 + 2618010 A s panTro1.chrUn_random 236852914 1 - 240967748 A s rn3.chr1 179764311 1 + 268121971 G a score=0.0 s hg17.chr17_random 1065649 1 + 2618010 A a score=2170.0 s hg17.chr17_random 1065650 3 + 2618010 CAG s panTro1.chrUn_random 236852915 3 - 240967748 CAG s rn3.chr1 179764312 3 + 268121971 CAG s galGal2.chrUn 65377719 3 - 165033910 CAG s fr1.chrUn 144947463 3 + 349519338 CAT s danRer1.chr13 15829409 3 - 20521091 GAG a score=-24667.0 s hg17.chr17_random 1065653 15 + 2618010 -----------------------------------------GGGAGGGGCTT------------------T----GTA s panTro1.chrUn_random 236852918 14 - 240967748 -----------------------------------------GGGAGG-----------------------TCCTAGTA s rn3.chr1 179764315 37 + 268121971 -----------------------------------------TGGTGGTGCTGGAGCAGTGGAGGTGGAGATGCTGGAA s canFam1.chr6 76445545 15 + 79106041 ------------------------------------------GGGGGGGTCT------------------TTCGG--- s galGal2.chrUn 65377725 11 - 165033910 -----------------------------------------TGGGGACATTG-------------------------- s fr1.chrUn 144947467 14 + 349519338 -----------------------------------------AGGAGGTCCTT------------------GTC----- s danRer1.chr13 15829412 55 - 20521091 GGATGGAGGGCCAGGACCATGCAGCGTGGAGCGTGGAGCAGCGGAGGGCCTGGAG----------------------- a score=6707.0 s hg17.chr17_random 1065668 6 + 2618010 CAGGGG s panTro1.chrUn_random 236852932 6 - 240967748 CAGGGG s rn3.chr1 179764227 6 + 268121971 CAGTGG s canFam1.chr6 76445560 6 + 79106041 CAGGGG s galGal2.chrUn 65377736 6 - 165033910 CAGGGA s fr1.chrUn 144947481 6 + 349519338 TTGAGG s danRer1.chr13 15829467 6 - 20521091 CAGCGG a score=54723.0 s hg17.chr17_random 1065674 139 + 2618010 AGGAGCTGGTACAGGGGAGGGGCTGGCACAGGGGAGGAGCTGGTACACGGGAGGAGCTGGTACAGGGGAGGAGCTGGTACAGGGGAGGAGCTGGCACAGGG-------------GAGGGGCT------------------------------------TTGCACAG-------------GGGAGGGGCTGGTACAGGGGAg s panTro1.chrUn_random 236852938 136 - 240967748 AGGGGCTG-TACAGGGGAGAGGCTGGCCC-GGGGAGGAGCTG-TACAGGGGAGGGGCTGGTACATGGGAGGAGCTGGTACAGGGGAGGGGCTGGCACAGGG-------------GAGGGGCT------------------------------------TGGTACAG-------------GGGAGGGGCTGGTACAGGGGAG s mm5.chr13 91941801 138 + 116458020 AGGAGCCAGTCCATGGGAGGAGCTAGTCCAAGGAGGGAGCTAGTCCATGGGAGGAGCCAGTCCATGGGAGGAGCTAGTCCATGAGAGGAGCCAGTCCATGG-------------GAGGAGC-------------------------------------TAGTCCAA-------------GGAGGGAGCTAGTCCATGGGAG s rn3.chr1 179764233 127 + 268121971 GGGTGCTGGAGCAGTGGAGGTGCTGGAGCAGTGGAGGTGCTGGAGCAGGGGAGGTGCTGGAGCAGTGGAGGTGCTGGAGCAGTGGTGGTGCTGGAGCAGTG-------------GAGG-------------------------------------------------------------TGGAGATGCTGGAACAGTGGAG s canFam1.chr6 76445567 136 + 79106041 GAGGGTCCGCAGAGGGGAGGGCCCCGCAGAGGTGAAGCCCCAGCAGAGGTGAAGCCCCAGCAGAGGGGAGGGTCGCGCAGGGGGGAGGGTCCCGCAGGGGG-------------GAGGG---------------------------------------TCCCGCAC-------------GGGAGAGGGTACTGCAGAGGGG s galGal2.chrUn 65377742 150 - 165033910 TGGGAACATTGCAGGGATGGGGACAGCAC-AGAGAGGGGACAGTACAGGGATGGGGACACTGCAGGGATGGGGACAGTACA-GAGAGGGGACATTGCAGAG-------------AGGGGACA------------------------------------CTGCAGAGAGGGGACAGTACAGGGACGGGATATTGCAGCAGAG s fr1.chrUn 144947487 187 + 349519338 AGGTCCTGGTCCAGAGGAGGTCCTGGTCTTGAGGAGGTCCTGGTCATGAGGAGGTCCTGGTCTTGAGGAGGTCCTTGTCTTGAGGAGG-TCTGGTCCTGAGGAGTCCTGGTCTTGAGGAGCTCCTGGTCATGAGGACGTCCTGGTTTTGTGGAGGTCCTGGTCTTG-------------AGGAGGTCCTGGTTTTGTGGAG s danRer1.chr13 15829473 138 - 20521091 AGGGCCTGGAGCAGCGGAGGGCCTGGAGCAGCGGAGGGCCTGGAGCAGCGGAGGGCCTGGAGCAGCGGAGGGCCTGGAGCAGCGGAGGGCCTGGAGCAGCG-------------GAGGGCC-------------------------------------TGGAGCAG-------------CGGAGGGCCTGGAGCAGCGGAG a score=4523.0 s hg17.chr17_random 1065813 25 + 2618010 gggc-tggcacaggggaggagctggt s panTro1.chrUn_random 236853074 26 - 240967748 GGGCTTTGTACAGGGGAGAGGTTGGT s mm5.chr13 91941939 25 + 116458020 GAGC-TAGTCCATGGGAGGAGCTAGT s rn3.chr1 179764360 25 + 268121971 ATGC-TGGAGCAGTGGAGATGCTGGA s canFam1.chr6 76445703 25 + 79106041 AGGG-CCCCACAGAGGTGAAGCCCCA a score=694.0 s hg17.chr17_random 1065838 121 + 2618010 acaggggaggagctgggacaggggaggggct-ttgcacaggggaggagctggtacaggggaggagctgggacaggggaggggctttgcacaggggaggagctggtacaggggaggggctggt s mm5.chr13 91941964 34 + 116458020 ----------------------------------------------------------------------------------------CCAAGGAGGGAGCTAGTCCATGGGAGGAGCCAGT s rn3.chr1 179764385 119 + 268121971 GCAGTGGAGATGCTGGAGCAGGGGAGGTGC--TGGAGCAGGGGAGGTGCTGGAGCAGTGGAGATGCTGGAGCAGTGGAGATGCTGGA-GCAGTGGGGGTGCTGGAGCAGTGGAGGTGCTGGA s canFam1.chr6 76445728 102 + 79106041 -----------------ACAGGGGGGAGGGTCCCACAGAGGGGAGGGTCCCGCAGGGGGAAGGGTCCG---CAGGGGGGAGGGTCCGCAGAGGGGAGGACCCCGCAGAGGGGAAGCCCCAGC a score=5837.0 s hg17.chr17_random 1065838 28 + 2618010 acaggggaggagctgggacaggggaggg- s panTro1.chrUn_random 236853100 28 - 240967748 ACAGGGGAGGGGCTGGCACAGGGGAGGG- s mm5.chr13 91942049 27 + 116458020 -CCAAGCAGGAGCCAGTCCATGGGAGGA- s rn3.chr1 179764385 28 + 268121971 GCAGTGGAGATGCTGGAGCAGGGGAGGT- s canFam1.chr6 76445728 12 + 79106041 -----------------ACAGGGGGGAGG a score=3726.0 s hg17.chr17_random 1065866 59 + 2618010 gctttgcacaggggaggagctggtacaggggaggagctgggacaggggaggggctttgc s mm5.chr13 91942076 57 + 116458020 GC-TAGTCTAAGGAGGGAGCTAGTCCATGGGAGGAGCTAGTCCATGGGAGGAGC-TAGT s rn3.chr1 179764413 57 + 268121971 GC-TGGAGCAGGGGAGGTGCTGGAGCAGTGGAGATGCTGGAGCAGTGGAGATGC-TGGA s canFam1.chr6 76445740 56 + 79106041 --GTCCCACAGAGGGGAGGGTCCCGCAGGGGGAAGGGTCCGCAGGGGGGAGGGT-CCGC a score=8176.0 s hg17.chr17_random 1065959 24 + 2618010 acaggggaggagctggtactgggg s panTro1.chrUn_random 236852914 24 - 240967748 ACAGGGGAGGTCCTAGTACAGGGG s mm5.chr13 91941998 24 + 116458020 TCATGGGAGGAGCTAGTCCAAGGA s rn3.chr1 179764504 24 + 268121971 GCAGTGGAGGTGCTGGAGCAGGGG s canFam1.chr6 76445830 24 + 79106041 AGAGGTGAAGCCCCAGCAGAGAGG a score=755.0 s hg17.chr17_random 1065983 1 + 2618010 A s panTro1.chrUn_random 236852938 1 - 240967748 A s mm5.chr13 91942022 1 + 116458020 G s rn3.chr1 179764528 1 + 268121971 A s canFam1.chr6 76445854 1 + 79106041 A s galGal2.chrUn 65377892 1 - 165033910 A a score=3000.0 s hg17.chr17_random 1065984 2 + 2618010 GG s panTro1.chrUn_random 236852939 2 - 240967748 GG s mm5.chr13 91942023 2 + 116458020 GG s rn3.chr1 179764529 2 + 268121971 GG s canFam1.chr6 76445855 2 + 79106041 GG s galGal2.chrUn 65377893 2 - 165033910 GG a score=11243.0 s hg17.chr17_random 1065986 152 + 2618010 GGCT------TGGTACAGGGGAGGGGCTGGTACGGGGAGGGGCTTTGCACAG----------------GGGAGGAGCTGGTACAGGGGAGGGGCTGGTACAGGGGAGGGGCTGGTACAGGGGAGGAGCTGGTACAGGGGAGGAGCTGGTACAGGGGAGGAGC-TGGTACAGGGGA s panTro1.chrUn_random 236852941 115 - 240967748 GGCT--------GTACAGGGGAGAGGCTGGCCCGGGGAGGAGCT----------------------------------------------------GTACAGGGGAGGGGCTGGTACATGGGAGGAGCTGGTACAGGGGAGGGGCTGGCACAGGGGAGGGGCTTGGTACAGGGGA s mm5.chr13 91942025 99 + 116458020 --------------------------------------------------------------------------AGCTAGTCCATGGGAGGAGCTAGTCCA-AGCAGGAGCCAGTCCATGGGAGGAGCTAGTCTAAGGAGGGAGCTAGTCCATGGGAGGAGC-TAGTCCATGGGA s rn3.chr1 179764531 134 + 268121971 TGCT-------GGAGCAGTGGAGGTGCTGGAGCAGGG---------------------------------GAGGTGCTGGAGCAGGGGAGGTGCTGGAGCAGTGGAGATGCTGGAGCAGGGGAGGTGCTGGAGCAGTGGGGGTGCTGGAGCAGGGGAGGTGC-TGGAGCAGTGGA s canFam1.chr6 76445857 147 + 79106041 GTC---------GCGCAGGGGGGAGGGTCCACAGGGGGGAGGGTCCGCAGGT----------------GGGAG-GGTCCACAGAGAGGAGGGCCCGGCAGAGGTGAAGACCCAGCAGAGAGGAGG-GTCCGCAGAGGGGAGGGTCCCGCAGAGGGGAGGGTC-CCGCAGTGGGGA s galGal2.chrUn 65377895 168 - 165033910 GGACAA----TGCAGCAGAGAGGGGACAGCACAGAGAGGGGACACTGCAGGGATGGGACAATGCAGCAGAGAGGGGGCATTGCAGGGATGGGGACACTGCAGGGATGGGGACACTGCAGAGATGGGGACATTACAGGGATGGGGACATTAAAGGGATGGGGA-CAGCACAGAG-- s fr1.chrUn 144947689 154 + 349519338 ----AGGTCCTGGTCTTGAGGAGGTCCTGGTCTTGTGAAGATCCTGGTCTCG----------------TGGAGGTCCTGGTCTTGAGGAGGTCCTGGACTTGAGGAGGTCCTGGTCCTGAGGAGGTCCTGGTCTTGAGGAGGTCCTCGTCTTGAGGAGGTCC-TGGTCTTGAGAA s danRer1.chr13 15829611 152 - 20521091 ------GGCCTGGAGCAGCGGAGGGCCTGGAGCTGCGGAGGGCCTGGAGCTG----------------CGGAGGGCCTGGAGCTGCGGAGGGCCTGGAGCTGCGGAGGGCCTGGAGCTGCGGAGGGCCTGGAGCTGCGGAGGGCCTGGAGCTGCGGAGGGCC-TGGAGCTGCGGA a score=100.0 s hg17.chr17_random 1066138 1 + 2618010 g s danRer1.chr13 15829763 1 - 20521091 G a score=1000.0 s hg17.chr17_random 1066138 1 + 2618010 g s panTro1.chrUn_random 236853056 1 - 240967748 G s mm5.chr13 91942124 1 + 116458020 G s rn3.chr1 179764665 1 + 268121971 G s canFam1.chr6 76446004 1 + 79106041 G a score=2723.0 s hg17.chr17_random 1066139 8 + 2618010 gggctggt s panTro1.chrUn_random 236853057 8 - 240967748 GGGCTGGT s mm5.chr13 91942125 8 + 116458020 GAGCTAGT s rn3.chr1 179764666 8 + 268121971 GTGCTGGA s canFam1.chr6 76446005 8 + 79106041 GGTCCCGC a score=37483.0 s hg17.chr17_random 1066147 162 + 2618010 acaggggaggagctggtacaggggaggggctggtacaggggaggggctggtacaggggaggggcttggtacaggggaggggctggtacaggg----------------------------------------gaggggctggtacaggggaggagctggtacaggggaggggcttggtacaggggaggggctggcacagggg s panTro1.chrUn_random 236852914 158 - 240967748 ACAGGGGAGGTCCTAGTACAGGGGAGGGGCTG-TACAGGGGAGAGGCTGGCCC-GGGGAGGAGCT--GTACAGGGGAGGGGCTGGTACATGG----------------------------------------GAGGAGCTGGTACAGGGGAGGGGCTGGCACAGGGGAGGGGCTTGGTACAGGGGAGGGGCTGGTACAGGGG s mm5.chr13 91942133 161 + 116458020 CCATGGGAGGAGCCAGTCCATGGGAGGAGCTAGTCCAAGGAGGGAGCTAGTCTATGGGAGGAGCT-AGTCCATGGGAGGAGCTAGACCATGG---------------------------------------AGCGGAGCTAGTTCACAGCAGGAGCTAGTCCACTGGAGGGGC-TAGTCCACAGAGGGAGATAGACCATGGA s rn3.chr1 179764674 200 + 268121971 GCAGTGGAGGTGCTGGAGCAGTGGGGGTGCTGGAGCAGTGGGGGTGCTGGAGCAGGGGAGGTGCT-GGAGCAGTGGGGGTGCTGGAGCAGTGGGGGTGCTGGAGTAGTGGAGGTGGTGGAGCAGTGGAGGTGGAGATGCTGGAGCAGTGGGGGTGCTGGAGCAGTGGGGGTGC-TGGAGCAGTGGGGGTGCTGGAGCAGTGG s canFam1.chr6 76446013 157 + 79106041 AGTGGGGAGGGTCCCGCAGGGGGGAGGGTTCCGCAGAGGGGAGGGCCCTACAGAGGTGAAGCCCC-AGCAGAGGGGAGGGTCTG---CAGAG----------------------------------------GAGAGGGCCCCGCAGGGGGGAGGGTACCACAGAGGGGAGGG-TCCCACAGGGGGGAGGGTCCCGCAGGGG a score=-308.0 s hg17.chr17_random 1066309 1 + 2618010 A s panTro1.chrUn_random 236853072 1 - 240967748 A s mm5.chr13 91942294 1 + 116458020 G s rn3.chr1 179764874 1 + 268121971 A s canFam1.chr6 76446170 1 + 79106041 G s galGal2.chrUn 65378063 1 - 165033910 A s fr1.chrUn 144947876 1 + 349519338 C a score=-3833.0 s hg17.chr17_random 1066310 24 + 2618010 -GGAGCTGGTACAGGGGAGGAGCTG s panTro1.chrUn_random 236853073 8 - 240967748 -GGGGCT----------------TT s mm5.chr13 91942295 24 + 116458020 -GGAGCTAGACCACGGAAAGAGCAA s rn3.chr1 179764875 24 + 268121971 -GGTGCTGGAGCAGTGGGGGTGCTG s canFam1.chr6 76446171 24 + 79106041 -GAGGGTCCGCAGAGGAGAGGGGTC s galGal2.chrUn 65378064 24 - 165033910 -GGGGACAGTACAGGGATGTGATAT s fr1.chrUn 144947877 24 + 349519338 -GGTCCTGGTCTTGAGGAGGTCCTG s danRer1.chr13 15829769 25 - 20521091 GGAGCGTGGAGCTGCGGAGGGCCTG a score=-964.0 s hg17.chr17_random 1066334 35 + 2618010 -------GTACA------GGGGAGGGGC-------------------------------------------------------TGGTACAGGGGAGGGGCTGG s panTro1.chrUn_random 236853081 35 - 240967748 -------GTACA------GGGGAGAGGT-------------------------------------------------------TGGTACAGGGGAGGGGCTGG s mm5.chr13 91942319 35 + 116458020 -------GTCCA------CGGGAGGAGC-------------------------------------------------------TAGTCCATGGCGGGAGCTAG s rn3.chr1 179764899 41 + 268121971 -------GAGCAGTGGAGGTGGAGGTGC-------------------------------------------------------TGGAGCAGTGGGGGTGCTGG s canFam1.chrUn 84688717 32 - 91062872 -------GCACA------GGGGTAAGGG-------------------------------------------------------TGG---AGGGACGTGGTTGG s galGal2.chrUn 65378092 34 - 165033910 -------GCAGA------GAGGGGACAA-------------------------------------------------------TGCAGCAGAGAGGGGACAG- s fr1.chrUn 144947901 35 + 349519338 -------GTCTT------GAGGAGGTCC-------------------------------------------------------TGGTCATGAGGAGGTCCTGG s danRer1.chr13 15829794 97 - 20521091 GAGCGTGGAGCT------GCGGAGGGCCTGGAGCGTGGAGCTGCGGAGGGCCTGGAGCGTGGAGCTGCGGAGGGCCTGGAGCGTGGAGCTGCGGAGGGCCTGG a score=2047.0 s hg17.chr17_random 1066369 10 + 2618010 -------CACAGGGGAG s panTro1.chrUn_random 236853116 10 - 240967748 -------CACAGGGGAG s mm5.chr13 91942354 10 + 116458020 -------TCTACTGTGA s rn3.chr1 179764940 10 + 268121971 -------AGCAGGGGAG s galGal2.chrUn 65378126 10 - 165033910 -------CACAGAGAGG s fr1.chrUn 144947936 10 + 349519338 -------TCCTGAGGAG s danRer1.chr13 15829891 17 - 20521091 AGCGTGGAGCTGCGGAG a score=1731.0 s hg17.chr17_random 1066369 14 + 2618010 -------CACAGGGGAGGGTC s galGal2.chrUn 65378126 14 - 165033910 -------CACAGAGAGGGGAC s fr1.chrUn 144947936 14 + 349519338 -------TCCTGAGGAGGTCC s danRer1.chr13 15829891 21 - 20521091 AGCGTGGAGCTGCGGAGGGCC a score=2500.0 s hg17.chr17_random 1066379 4 + 2618010 GGTC s panTro1.chrUn_random 236853126 4 - 240967748 GGTC s mm5.chr13 91942364 4 + 116458020 GAAC s galGal2.chrUn 65378136 4 - 165033910 GGAC s fr1.chrUn 144947946 3 + 349519338 -GTC s danRer1.chr13 15829908 4 - 20521091 GGCC a score=470.0 s hg17.chr17_random 1066383 9 + 2618010 AGTTCTGAG-- s panTro1.chrUn_random 236853130 9 - 240967748 AGTTCTGAG-- s mm5.chr13 91942368 9 + 116458020 AGTTTTCTA-- s canFam1.chrUn 84688749 9 - 91062872 AGTTTTAAG-- s galGal2.chrUn 65378140 9 - 165033910 ACTGCAGGG-- s fr1.chrUn 144947951 9 + 349519338 GGTCTTGAG-- s danRer1.chr13 15829912 7 - 20521091 ----TGGAGCG a score=1655.0 s hg17.chr17_random 1066392 5 + 2618010 TGATT s panTro1.chrUn_random 236853139 5 - 240967748 TGATT s mm5.chr13 91942377 5 + 116458020 TGATT s canFam1.chrUn 84688758 5 - 91062872 CAACT s fr1.chrUn 144947967 5 + 349519338 TGGTC s danRer1.chr13 15829919 5 - 20521091 TGGAG a score=3686.0 s hg17.chr17_random 1066397 23 + 2618010 CTGACCAGGACTTG--CGTGTGGAG s panTro1.chrUn_random 236853144 23 - 240967748 CTGACCAGGACTTG--CGTGTGGAG s canFam1.chrUn 84688763 23 - 91062872 CTGCCCCGGGCTCC--CATGCCCCG s fr1.chrUn 144947972 25 + 349519338 CTGAGGACGTCCTGGTCTTGAGGAG s danRer1.chr13 15829924 24 - 20521091 CTGCGGAGGGCCTGG-AGCGTGGAG a score=956.0 s hg17.chr17_random 1066420 11 + 2618010 GGTTTGACCCC s panTro1.chrUn_random 236853167 11 - 240967748 GGTTTGACCCC s canFam1.chrUn 84688786 9 - 91062872 TG--TGACCTT a score=4376.0 s hg17.chr17_random 1066431 33 + 2618010 CCC-AGGTTAGGACCCCAA----GTTTTGCCCACGGGT s panTro1.chrUn_random 236853178 34 - 240967748 CCCCAGGTTAGGACCCCAA----GTTTTACCCATGGTT s mm5.chr11 180885 37 - 121648857 CCT-AGGTATGGATACTAACTACATCTTATCCATAGCT s canFam1.chrUn 84688795 26 - 91062872 CCC-GGGCCAGGACCCCGC-----------CCGCAGCT a score=-493.0 s hg17.chr17_random 1066464 74 + 2618010 CCCCCACCCCATATGCA-CATGGGCTGAGGTCGGAGGG---CTGCCTGCCCAACGGCCTGCAATGGCTAGTG-----GGGTCT s panTro1.chrUn_random 236853212 74 - 240967748 CCCCCACCCCATATGCA-CATGGGCTGAGGTCGGAGGG---CTGCCTGCCCAACGGCCTGCAATGGCTAGTG-----GGGTCT s mm5.chr11 180922 69 - 121648857 GTTCAA--CTATTTATA-GATGGGACCAAGGCAGAGTA---GTTGTTGCCCAGTGCCCTACA---GCTAATG-----ATTCCT s canFam1.chrUn 84688821 58 - 91062872 CCT---------------GACTCACCGAGGGCAGAG-------GTTTGTCCAGGGCCCTGTG---GCTGGTGAGTGCAGGTTT s danRer1.chrUn 19061771 73 + 367113659 ----TCCTCTGCCTGTACCGCGGTATGAGTTTGGGGTGGCAGTGCTGGAGCAGCAG-GTGTATGTGCTGGGG-----GGTATT a score=-13650.0 s hg17.chr17_random 1066538 93 + 2618010 GTTCCA----CTCTTGAG-----CCAAGTGCTGAGGA----TCTGCCTAGTGGGAGAGCCTGGTGGGGA-------------------ACATCCTGTCTCTGGTAAATCCACTCGGGGCTGGGTG------- s panTro1.chrUn_random 236853286 93 - 240967748 GTTCCA----CTCTTGAG-----CCAAGTGCTGAGGA----TCTGCCTAGCGGGGGAGCCTGGTGGGGA-------------------ACATTCTGTCTCTGGTAAATCCACTCGGGGCTGGGTG------- s mm5.chr11 180991 69 - 121648857 TGTCTATCTGCACTCAAA-----CCAAGTACC------------------------AGTCTGGC------------------------ACCTTCTTTCTC-AGTAAAGCCACT--AATTCTGGTA------- s canFam1.chrUn 84688879 91 - 91062872 GTCCCT----CTCTGCCG-----CTGGGTGCC-GGGC----CCAGCCTAGTAGGG-ACGGTGGCGCTCA-------------------AGTTCCCATCTTCCTCAGACCCACGCAGCCCTGGGTG------- s fr1.chrUn 144947997 120 + 349519338 GTCCTC----ATCTTGAGGACGTCCTGGTCTTGAGGAGGTCCTGGTCTTGAGGAG-GTCCTGGTCTTGAGAAGGTCCTGGTCTTGAGGAGAATCCGGCTTCAGCCGACCCACGTTGGCACAGGTG------- s danRer1.chrUn 19061844 97 + 367113659 GCCACA----CACATGCG-----GCAGGGAATCAGCT----ACCGGCGACACGAG-AGC--AGTGTGGA-------------------GCGCTGGCACCCCGACACCAACACATGGAGCTCGGAGCGCCGCA a score=-11525.0 s hg17.chr17_random 1066631 70 + 2618010 TGACTGTAT---------AATCGAGGTTGGTCATGAATGTTTGGAGGTTTATGTCACTGTGCTC--------------------------------------------------------------------------------------CGTGGTTGGTCACGA s panTro1.chrUn_random 236853379 156 - 240967748 TGACTGTAT---------AATCGAGGTTGGTCACGAATGTTCGGAGGGTTATGTCACTGTGCTCCGTGGTTGGTCACAAATGTTCGGAGGGTTATGTCACTGTGCTCCGTGGTTGGTCACGAATGTTCGGAGGGTTATGTCACTGTGCTCCGTGGTTGGTCACGA s mm5.chr11 181060 53 - 121648857 TGACTGTAG---------AATTCACATCCATCATTAGTGTTCAGAGGAATATGCCATCATGC------------------------------------------------------------------------------------------------------- s canFam1.chrUn 84688970 30 - 91062872 TG--TGTCT---------AATCGAGATCCCTCGCAGATGTT---------------------------------------------------------------------------------------------------------------------------- s danRer1.chrUn 19061941 70 + 367113659 TGGCCGAGTCGCGCAGCACACTGGGGGTGGTGGTG-CTGGCCGGAGA--------ACTGTACGC--------------------------------------------------------------------------------------GCTGGGTGGATACGA a score=20946.0 s hg17.chr17_random 1066701 147 + 2618010 ATGTTCGGAGGGTTATGTCACTGTGGCTCCGTGGAACTGGCACCAAGCT--CATCTCGCCTCCTCTTCTGTTGAAGAAAT---GA---------TGCCCCTTTCTGGGGTCACGTTCTTAGAGTGGGCAGGGGTGGCTGCCCCTCTGACCAAAGCTCCCGT- s panTro1.chrUn_random 236853535 147 - 240967748 ATGTTCGGAGAGTTATGTCACTGTGGCTCCGTGGAACTGGCACCAAGCT--CATCTCGCCTCCTCTTCTGTTGAAGAAAT---GA---------TGCCCCTTTCTGGGGCCACGTTCTTAGAGTGGGCAGGGGTAGCTGCCCCTCTGACCAAAGCTCCCGT- s mm5.chr11 181113 111 - 121648857 ----------------------------------------CACCAAGCTCACATCTTTTCTCGGGGTCTGTCAATAGAAC-CAGA---------CTTTCTTTTCTGAGATTAGGTTCTCAGAGTGGACAAGTGTGTCTGGTCCTTTGTCCAAAGTCTCCAT- s canFam1.chrUn 84689000 142 - 91062872 ------GGGGATCTATGCCCTCGTCACTCTACGGAGTTGACACTAG--T--GGCCTTACCTCCCCTTCTACTTGGGAAACACAGAAGTGCCACTTGCTCCTTTCT--------ATTGTTGAAGTGG-CAGACGTGGCCACACCTCTG-CCAAAGCCACCGCT a score=21088.0 s hg17.chr17_random 1066848 209 + 2618010 AAGCCTGGAACCTGTCCCAGAG-GAGGCCTGGTCTCTCCCTGGTGCTGCAAAGTGCCAGTGTGGGGCAGGCTGGGGTCCCCCTGGCCCTGGGGGAGAGGGGGCTCCTTCTTGGCCTGGGTCCCTTGGGGTCAGAAGAGGTGGCCCCTGCCTCTACTGAGGGACTCCCCATCAGTACCCCCTAACCTGGTCAGAGGG-AGCGTACTTAGGTC s panTro1.chrUn_random 236853682 209 - 240967748 AAGCCTGGAACCTGTCCCAGAG-TAGGCCTGGTCTCTCCCTGGTGCTGCAAAGTGCCAGTGTGGGGCAGGCTGGGGTCCCCCTGGCCCTGGGGGAGAGGGGGCTCCTTCTTGGCCTGGGTCCCTTGGGGTGAGAAGAGGTGGCCCCTGCCTCTACTGAGGGACTCCCCATCAGTACCCCCTAACCTGGTCAGAGGG-AGCGTACTTAGGTC s canFam1.chrUn 84689142 108 - 91062872 GACCTTGGTGTCCGTCCCAGAGAGGGGGCTGGCCCCTCCCTGATGCTCCAAGTGGCCAGTGTGATG--GGCTGGGGTCTCACAGGCC-----------------------------------------------------------------------------------------------------TCAGAAGGTCGTATGCTTCGACT a score=10869.0 s hg17.chr17_random 1067057 62 + 2618010 TCCTGTTCCACTTTCCAATTTGAACA-CCTATAAACCCTTTGGCCTCAGCCTCTTTCCACCAA s panTro1.chrUn_random 236853891 62 - 240967748 TCCTGTTCCACTTTCCAATTTGAACA-CCTATAAACCCTTTGGCCTCAGCCTCTTTCCACCAA s mm5.chr11 181245 62 - 121648857 TCCTCCCCAAGTTACCCAGGTAGATG-CCTTGAAGGTCTTTGGCTTCAGCCTCATCCCACTGA s canFam1.chrUn 84689250 53 - 91062872 CCCTGCTCCAGTT-CCAACTAGACCATCCCGGGGGCTCTGAGGCCTCTG---------ACCGA a score=22165.0 s hg17.chr17_random 1067119 219 + 2618010 GAGCCAGCAACAGCTGTCCTCAGGGCCTGCCTTTGGTCAGGCCACCCTGAACAAACTTCACTCAGCCACTAATGGCCTGCCGTGGCTGT--GGGATTCCGCTCCTGGCCAGGACCTTGGACGGAAGCC--------ACTGCCAACCACCCAGGTCACACTCACCACCCACCTGGCCACGCAGGAGTGCCCCCTCCT--CTCAGAGCCCTCGGGGCAGCCCCAGCCGGGCGT s panTro1.chrUn_random 236853953 218 - 240967748 GAGCCAGCAACAGCTGTCCTCAGGGCCTGCCTTTGGTCAGGCCACCCTGAACAAACTTCACTCAGCCACTAATGGCCTGCTGTGGCTGT--GGGATTCAGCTCCTGGCCAGGACCTTGGACGGAAGCC--------ACTGCCAACCACCCAGGTCACACTCACCACCCACCTGGCCACACAGGAGTG-CCCCTCCT--CTCAGAGCCCTCGGGGCAGCCCCAGCTGAGCGT s canFam1.chrUn 84689303 179 - 91062872 -GGTCAGGAGCACCTGAGCACCAGG--------------------------------------AGCCGCTGGTAG------GTGGCTTTCATGAAGTCTCCTCCCTGCCAG------AGAGGGGAATCTGCCGTGGGCTACCAGCTGTTCTGCCCCCACGGCCCACCACCCTTGCCACGTGGAAGTG-CCCCAGCTGGCTTATGGTGCCAGGGGTGGCCTTCCCTGGGCGT a score=7336.0 s hg17.chr17_random 1067338 78 + 2618010 CTAGCATTTGATGATGTCCCTGACCCCATGTCCCCACCAAGCCTCCCTCTGAGGGTCCCTAAGAGAAAGCATGCTTTA s panTro1.chrUn_random 236854171 78 - 240967748 CTAGCATTTGATGATGTCCCTGACCCCATGTCCCCACCAAGCCTCCCTCTAAGGGTCCCTAAGAGAAAGCATGCTTTA a score=17257.0 s hg17.chr17_random 1067416 125 + 2618010 CGGAGACCTTGTCAAGGAGGGC----TGGAGTCAGGAGGAAAGGCCTTCCCCTCAAACCAGAAACTCACCCTAGAGCCTGAAGGGCCTTAAAAACAAACAAGAAAAATGACTTTAGTTTTGCTTTGCGT s panTro1.chrUn_random 236854249 125 - 240967748 CGGAGACCTTGTCAAGGAGGGC----TGGAGTCAGGAGGAAAGGCCTTCCCCTCAAACCAGAAACTCACCCTAGAGCCTGAAGGGCCTTAAAAACAAACAAGAAAAATGACTTTAGTTTTGCTTTGCTT s canFam1.chrUn 84689664 113 - 91062872 TGAGGACCTCGCCACAGAGAGCACGTGAGAGTGAGAAGGACAGAAACTCCCC-CAGACCAGGAACCCACCTTAAA---------ACCTTAACATCAAACTAACCAAATGGCTTTATCTGTGTT------ a score=21361.0 s hg17.chr17_random 1067541 108 + 2618010 TCCACAAAGAGGCAGTTATGGCACCAGAAAAGTGAAGGTGTCTCTCTCCCAGAATTAAGGTTGACTCTGAAGTTTATTACATCCTAAAGGTGTCACTAAAGCCACATG s panTro1.chrUn_random 236854374 108 - 240967748 TCCACAAAGAGGCAGTTATGGCACCAGAAAAGTGAAGATGTCTCTCTACCAGGAATAAGGTTGACTCTGAAGTTTACTACATCCTAAAGGTGTCACTAAAGCCACATG s mm5.chr11 181334 105 - 121648857 TCCACAGAGAGGCAGGCACTAAATCAGGAACATGAGGACAGGCCTTACCCAGGAATGAGGTTAATGCAAGAGCTTAT---AATCTACAAGTGTCACTCTCACTATGTG s canFam1.chrUn 84689777 86 - 91062872 TCCACAA--AGGTGGTTTCTGCACCAGAAA--------------------AAGAATGAGGTTGACTTTAGAAGTTATTATAACTTAAATATGTGTCAGATGTCATATG a score=0.0 s hg17.chr17_random 1067649 26 + 2618010 GCCATTTTGCAGTCCATCCAAATGAT a score=2801.0 s hg17.chr17_random 1067649 20 + 2618010 GCCATTTTGCAGTCCATCCA s panTro1.chrUn_random 236854482 20 - 240967748 GCCATTTTGCAATCCATCCA s mm5.chr11 181439 20 - 121648857 GCTGTGTCCTAATCTATTTA a score=555.0 s hg17.chr17_random 1067669 6 + 2618010 AATGAT s panTro1.chrUn_random 236854502 6 - 240967748 AATGAT a score=8799.0 s hg17.chr17_random 1067675 49 + 2618010 CCCCTCACCCACGGGTACCTTCAGAAGGTCCT-CACACCAGGTGCCACCG s panTro1.chrUn_random 236854508 49 - 240967748 CCCCTCACCCACGGGTACCTTCAGAAGGTCCT-CACACCAGGTGCCACCG s canFam1.chrUn 84689863 50 - 91062872 CCCACCACGCACGGCTACCCTCAGAAGACCCCGTCCCCCAAGGGCCACCA a score=2986.0 s hg17.chr17_random 1067724 19 + 2618010 TGTGGGTCTGTGGCCTCCA s panTro1.chrUn_random 236854557 19 - 240967748 TGTGGGTCTATGGCCTCCG s rn3.chr3 157070256 19 - 170969371 TGCAGGGGCGGGGCCTCTG s canFam1.chrUn 84689913 19 - 91062872 TGTCAGCCAGCTGTTCCCA a score=20166.0 s hg17.chr17_random 1067743 218 + 2618010 CACCCTCTT-CCCTCACACCAGATGCCACCGTGTGGGTCTGTGGCCTCCACACCCTCTTCCCCTCACACCAGGTGCCACCGTGTGGGTCTGTGGCCTCCACACCCTCTTCCCCTCACACCAGGTACCACCGTGTGGGTCTGTGGCCCCCACACCCTCTTTCCCTCACACCAGGTACCACCGTGTGGGTCTGT--------------------------------------------------GGCCTCCACACCCTCTTCCCCTCACAC s panTro1.chrUn_random 236854576 269 - 240967748 CACCCTCTTCCCCTCGCACCAGGTGCCAACATGTGGGTCTATGGCCTCCGCACCCTCTTCCCCTCACACCAGGTGCCACCGTGTGGGTCTATGGCCTCCACACCCTCTTCCCCTCACACCAGGTGCCACCGTGTGGGTCTATGGCCTACGCACCCTCTTCCCCTCACACCAGGTGCCACCGTGTGGGTCTGTGGCCTGTGCACCCTCTTCCCCTCACAGCAGGTGCCACCGTGTGGGTCTACGGCCTCCGCACCCTCTTCCTCTCACAC s rn3.chr3 157070275 218 - 170969371 TCTCCTCTTTCCCACTGCACTGCTGCTCTC-TGCAGGGGCGGGGCCTCTGCATCCTCTTTCCCACTCCCACTGCTGCTCTCTGCAGGGGCGGGGCCTCTGTCTCCCGTTTCCCACTCGCACTGCTGCTCTCTGCAGGGGCGGGGCCTCTGCATCCTCTTTCCCACATGCACTGCTGCTCTCTGCAGGGGCGG--------------------------------------------------GGCCTCTGTCTCCCGTTTCCCACTCGC a score=2132.0 s hg17.chr17_random 1067961 27 + 2618010 CAGGTGCCACTGTGTCAGTCTATGGCC s panTro1.chrUn_random 236854845 27 - 240967748 CAGGTGCCACCGTGTGGGTCTATGGCC a score=2101.0 s hg17.chr17_random 1067988 22 + 2618010 TGCAAACCAAGGCCCTCACAAA s panTro1.chrUn_random 236856907 22 - 240967748 TGCAAACCAAGGCCCTCACAAA a score=5534.0 s hg17.chr17_random 1068010 44 + 2618010 CCAAGGGACCCACGTGGAGAGGGTCACTGTGCACGTG-ATATGGC s panTro1.chrUn_random 236856929 44 - 240967748 CCAAGGGTCCCACGTGGAGAGGGTCGCTGTGCACGTG-ATATGGC s canFam1.chrUn 84690928 44 - 91062872 CCAAGTGACCCACGTGTATAGCgtgtgtgtgtgtgtgtgtgtgt- a score=18828.0 s hg17.chr17_random 1068054 194 + 2618010 CCCTCTTTGGAAGGGCTGTAGTCACC---------GTGAGGGGCTAAGGTTTGCTCTTGGGGCTCTGATTCTTATTTAACTGTGCACTGGGCACCGTTTTAGGGCTTAAGACACTTCCACA----AGAAACAGGCTCCTGCCCTGAAGGGCGCC-TCCGGTTGGGGGGCCGACGGCGATGCCATCTGCTGTAAAGAACCCTTTATGGT s panTro1.chrUn_random 236856973 194 - 240967748 CCCTCTTTGGAAGGGCTATAGTCACC---------GTGAGGGGCTAAGGTTTGCTCTTGGGGCTCTGATTCTTATTTAACTGTGCACTGGGCACCGTTTTAGGGCTTAAGACACTTCCACA----AGAAACAGGCTCCTGCCCTGAAGGGCGCC-TCCGGTTGGGGGGCCGACGGCGATGCCATCTACTGTAAAGAACCCTTTATGGT s mm5.chr11 182011 135 - 121648857 CCTTCTTTAGGTGATCTACAGTCACT----------TAAGGGGCCAAAGCTTATTCTC---------ATTATTCCCCATCCATATACTGCACATCAGT----GGGCAAAGGCA------------------------CTGATCCATAGGGCACC--CCAGTCAGG------------------------ATAGGGGGCCATATATAGA s canFam1.chrUn 84690972 192 - 91062872 --gtgtgtgtgtATAATGCTGTAACCCAGTGGTCAGGGAGGAGCCAAGATTTGCCACGTGGCTTCTTATTTTTACCTGACGGCCAGGTGG--ATTTGTCTAGGGTTTGTGACAAATCCATAAAACAGACACAGACCCCTGTCCAGAAGGACACCTTCCAGCAGGGAGAAATGCCACGAT-----------CAAGAGGCCGTTCACAG- a score=1426.0 s hg17.chr17_random 1068248 112 + 2618010 GGGGCGTGGGTGACGAGGCTGAG--CCCAGCACTGGATGGGAGCAGCTG--------AGCCAGGAAGTGGCACTCAGCAGGAACTGGG----GGGCTTGGTGGGAAGGGGACAG----GCAGGAGGCCAG s panTro1.chrUn_random 236857167 112 - 240967748 GGGGCGTGGGTGACGGGGCTGAG--CCCAGCACTGGGTGGCAGCAGCTG--------AGCCAGGCAGTGGCACTCAGCAGGAACTGGG----GGGCTTGGTGGGAAGGGGACAG----GCAGGAGGCCAG s mm5.chr11 182146 94 - 121648857 GAAGGGCAGCTCATGAAGATCAGTACCCAGCAC--------------------------CCACGA---GTCTATCAGCAAG-GCTGGACCATAGCTTTGGTGGAAGAGTGCTTG------AGGAGGCCAG s canFam1.chrUn 84691164 75 - 91062872 ---ACGCTCCTGCCGA-GCTCCG--GCCAGGGC------------------------AGCCTGGG---GTCAGCAGGC----GCAGCGC---AGCCTCAGTGGGA---------------AGGATGCCAG s danRer1.chr23 21240343 121 - 22442303 GGGCTGCTGATGAAGAGGAGGAG--CTGAGGATGAAATGGTAGGAGCGGATGATGAAGAGGAGGAGCTGCTGATAAGCAGGAGCTATG----GG---TGAAGGGGAGGAGCTTCTGATGAAGGAGAGCAG a score=111336.0 s hg17.chr17_random 1068360 740 + 2618010 GAAAGAGCATTCCAGGTTCAAAGCCCTAGTGAGGGTGGAGCCCACCGGGAGAGGAGCAGCACGGAGGCGGTGTCAGGGGAGGCTGGTGGGAGGGAGGCACAGGGTCCAGAAGGTCCCTTGCGACCAGAA-GGGGCACCCCCAAACTCCTGAGATCCATGTGTCCACCATCCCAAGGGAAACAGGCCTCCAAGCTGGCCTCAGCTTGATTGAAAA--AACAAAGCAAATGAAATAAAACAAAACACTA---CGTGTCTCGCCCACTGGAGAGATGGAATGAGACTCATGGTGGGTGGAAGAGTTTGCTTTCAGTTGTGCTTTGGGAAGTCAG---GAGAGAAAGGAGACAGCCC-------CACCCCAGAGGCTCATGGAAGGCCAGGTGGACAGAAGGACAA--AGGA--AGGCACAGGGCACCTGGCCCCAAGAGGTTTGGGTTTATCAAGATAACAGAC-----GTCTACACAGCTCGCCCCAGGACATGGCGGAGGGAACAGAGCTATCCCCTCAAATGCCTGTGTTCCTTGGTTGTCATGACTTAACTCCACGGAGAGCTGAACCATACAGACTGATCAGAAGCTGGGCCCCAGCGACGTGGCCAGGGCCGAGGCTCAGCCTGTCGGTGTGAAGTGTTCATCACCAGCACTTTACAG-ACCGTGCAATGGCAGCTTTCACGGGCGGTGAGCACAACAATCCCGACCTTATTTTCCACAAGCACCAACAGATGTTTAAAACTGGGGAGAAATTTCAAGGACTG s panTro1.chrUn_random 236857279 741 - 240967748 GAAAGAGCATTCCAGGTTCGAAGCCCTAGTGAGGGTGGAGCCCACTGGGAGAGGAGCAGCACGGAGGCCGTGTCAGGGGAGGCTGGTGGGAGGGAGGCACAGGGTCCAGAAGGTCCCTTGCGACCAGAA-GGGGCACCCCCAAACTCCAGAGATCCATGTGTCCCCCATCCCAAGGGAAACAGGGCTCCAAGCTGGCCTCAGCTTGATTGAAAA--AACAAAGCAAATGAAATAAAACAAAACACTG--GCGTGTCTCGCCCACTGGAGAGATGGAATGAGACTCATGGTGGGTGGAAGAGTTTGCTTTCAGTTGTGCTTTGGGAAGTCAG---GAGAGAAAGGAGACAGCCC-------CACCCCAGAAGCTCATGGAAGGCCAGGTGGACAGAAGGACAA--AGGA--AGGCACAGGGCACCTGGCCCCAAGAGGTTTGGGTTTATCAAGATAACAGAC-----GTCTACACAGCTCGCCCCAGGACATGGAGGAGGGAACAGAGCTATCCCCTCAAATGCCTGTGTTCCCTGGTTGTCATGACTTAACTCCACGGAGAGCTGAACCATACAGACTGATCAGAAGCTGGGCCCCAGCGACGTGGCCAGGGCCGAGGCTCAGCCTGTCGGTGTGAAGTGTTCATCACCAGCACTTTACAG-ACCGTGCAATGGCAGCTTTCACGGGCGGTGAGCACAACAATCCCGACCTTATTTTCCACAAGCACCAACAGATGTTTAAAACTGGGGAGAAATTTCAAGGACTG s mm5.chr11 182240 620 - 121648857 GGAA---------------------------AGAGAGGACCCTAACATTAGAAAAGCA-------------------GGAGGCCAGAACAGAGGCAACTCGGGATCTAGATGGTCTTTCTAGATCAGGGTAAGGTGACCTGCAATGCCCGAGTTTCATATTTTCATCATCGTAGGGAAAATGGGACTCCAATCTGGCTTCAACTTGACTAAAAA----------TAATAAAGTAAAATGCTACACTT--ATATGTCTGGCCTATTGGAGATGTGAAGTGAGATTTA-------------AGTTTGCTTTGATGTGTGCTCAGGGAA-CCAGTACGTAAGAAGTGAAGCAGCTCACTCTAACACTCTACAA--------------AGGTAGACAGAAGAGGAAGCAGGG--AAGCACTGAGCATGTAACCGAAAGCAATCTGAGTGCAGAGAAGTATCAAGCCGAAAGCCAGTACAGCTCACCTCGGGGAA----------------------CCCATTGATGCCTATGTGTCTCA---GTCCCTGCACAATCTTGGGAACAGCTGAACTGTACCAACAAAC----AGGTGGGACCCTGCTGCTTAACTTGAGCCAA-------------AGTGTATAGCATCCATCATCAG--CTTTGCAA-A-----------CAGCTTCCA-GGGCTGTGAGCAAAACAATCCCAACCTTATTTTCCACAAGCACCAACAGATGTTTAAAATTGGGGAGGAATCTCTA-GACTA s canFam1.chrUn 84691239 590 - 91062872 GGACGAGCGCTCCAGCACCTCGGCTCGAGCGAGGA--------------GGAGGAGCAGTGAGGAGAC---------GGGGGC------AGCGGAGACACTGGGTCCA-AAGTTCCCTCAAGACCAGGAAACGGCACCCGTCGGCGCCTGCAGCGCACGCTGCTACCACCTCAGGGGAGATGGGGCTGCAAATGGGACTCAGCTTGATTTAAAACAAACCAAACAAGTGAA-TAAAACAAAAAGCTATGACATACCTGGCTCGCTGGAGA---GGCATGAGACGCTTGGTGCGGGGAAGGGTCTGCT---------------------------GCGACGGAAGCCAC-GCCT-------CGCTC-------------------GGGCAGACGGACAGACGA--CGGGCCGGGCTCCGGCCTCCAGTGCCTCAGACACTGGGGAGCA---------CAGAC-----GCCTACGCAGCTAACCAAGG---ATGCGACAGGGCAGAGAGCGGCTCC------------------------GGGGCGTCAGGAGCTCTCTGGGGGCCG------------------------GGGGCCCTGC-----GCCCTGGGCCGC--------------GTGTGAAGGATCCGTCACCAACGCGTTAAAACACTGGCCCGTGGCAGCTGGCGTGGCCA--GACCCAAACAACCCCGACCTCATTTTCCAGGAGCACCAGCAGATGTTGGAAGTCGGGGCGGAGCCTCAGGGCCCG a score=2549.0 s hg17.chr17_random 1069100 10 + 2618010 GAACATTTCT s panTro1.chrUn_random 236858020 10 - 240967748 GAACATTTCT s mm5.chr11 182860 10 - 121648857 AAACATTTCT a score=341960.0 s hg17.chr17_random 1069110 1391 + 2618010 CAGGCAGGGCCCCTGGAGCAGCTCCAGGGAGCTGCACGCCCGTGGCCTGGTGGTGTTGTCCTAAGTGCGCCCTTCACACATCAGGAATGTCAAACAGAGCTGACCTCAGCACCGCCGAGAGCCCCACTCCAAACACAGCC----------ATCTCCAGCAGCAGGCAGGCTCCGGGGTGTTTGTCTAATTTAAAACAAACTAGTTGGGCGGTATATTATTTCTCCAACCAAACAGGATTGAAAGCCGCATGTGCGAGGCATGACTATTGCTTCCTGCTGAAGTCCAGGCATCCCTCAAGCCTGCTCAGCACATTTAGCAA----AAAGGAgatgattgtttcctatctcactgagaaaatagaagcaatcagaaaaga------------atgtccacgtgctccgacca-----caccatcttcccacccaactgtgcctggccagccagacccaccgc-cgtccCCCACTCCAG-GCTGGCCAGGAGCTCTGGTTGCCCCCTCAGTGGGGCCACCCTCAACAACAGTC------ATGCTGTCCCCTC-----TCCTGCCGGCCAGGGccc-----cccagctgctggctgtctctctgctctttttcaagatgcccctctaagaacacagtctt-ccttctccacttcctctcttcctggtctttcctgagtcctcgctaagctagattttacctcccctattccac-----------------------------------------------------------------taaacgtgctttt-----gccg-------atgttaccggcaaaggctaa--ccctggcgtcagttctcagccctcatcttggctgatcgacaacacccaacaGGAG----------CAGTAGAAAGCGTGTTCTTCCTGCGACTTCCGGAATGCCCGTCT-----CCTGCTCTTTTGATGTTC----------ATGCCtgtatttgcttcctattgctgctacggccgatgaccacagacttagtggcttaaagcaacacaca--------cttatcatcttatggttttggaaatcagaagtcccacatgggtttcactgg------actaaaccaaggcgtcagcaagagtctcttctttct--ggaggctctggggagaattcacttccgtgcctcttccagcttc-------------tagaggttaccta-------------------tcttccatgcctctgggttcctccctccacctctaaagcaaactcatcactctgacttttgcttccgtagttacatcttctctgatgctaacagtgttgcttccttcttgtgaggactttcatgattgcactggccacctggttaatccaggataatcccccacctcaagacccttaatttaatcacacctgcaaactccctcttgacgtataaggtag--------------tggggagtgagatgtggacatctttgggggccattatcctgctgactacaGTTGGCCCCTGGCTTCCAAAGACCCACA---AGGATGC---cactccaccccagcatctgtgaacatctacctcattacagcattaagtcaaagtccagaaa s panTro1.chrUn_random 236858030 1396 - 240967748 CAGGCAGGGCCCCTGGAGCAGCTCCAGGGAGCTGCACGCCCGTGGCCTGGTGGTGGTGTCCTAAGTGCTCCCTTCACACATCAGGAATGTCAAACAGAGCTGACCTCAGCACCGCCGAGAGCCCCACTCCAAACAGAGCC----------GTCTCTAGCAGCAGGCAGGCTCCGGGGTGTTTGTCTTATTTAAAACAAACTAGTTGGGCGGTATATTATTTCTCCAACCAAACAGGATTGAAAGCTGCATGTGCGAGGCATGACTATCGCTTCCTGCTGAAGTCCAGGCATCCCTCAAGCCTGCTCAGCACATTTAGCAA----AAAGGAgatgattgtttcccatctcactgagaaaatagaagcaatcagaaaaga------------atgtccacgtgctccgacca-----caccatcttcccacccaactgtgcctgcccagccagacccacccctcatccccgACTCCAG-GCTGGCCAGGAGCTCTGGTTGCCCCCTCAGTGGGGCCACCCTCAACAACAGTC------ATGCTGTCCCCTC-----TCCTGCCGGCCAGGGccc-----cccagctgctggctgtctctctgctctttttcaagatgcccctctaggaacacagtctt-ccgtctccacttcctctcttcctagtctttcctgagtcctcgctaagctagctttcacctcccctattccac-----------------------------------------------------------------taaacatgctttt-----gctg-------atgttaccggcaaaggctaa--ccctggcgtcagttctcagccctcatcttggctgatcgacaacacccaacaGGAG----------CAGTAGAAAGCGTGTTTTTCCTGAGACTTCCGGAATGCCTGTCTCCTGGCCTGCTCTTTAGATGTTC----------ATCCCtgtatttgcttcctattgctgctacagccgattaccacagacttagtggcttaaagcaacacaca--------tttattatcttacagttttggaaatcagaagtcccacatgggtttcactgg------actaaaccaaggcgtcagcaagagtctcttctttct--ggaggctctggggagaattcacttccgtgcctcttccagcttc-------------tagaggctaccta--------------------cttccatgcctctgggttcctccctccacttctaaagcaaactcatcactctgacttttgcttccgtagttacatcttctctgatgctaacagtgttgcttccttcttgtgaggactctcatgattgcactggccacctggttaatccaggataaccccccacctcaagacccttaatttaatcacacctgcaaactccctcttgacatataaggtag--------------tggggagtgagatgtggacatctttgggggccattatcctgctgactacaGTtggcccctggcttccaaagactcaca---aggatgc---cactccaccccagcatctgtgaacatctacctcattacagcattaagtcaaagtccagaaa s mm5.chr11 182870 1402 - 121648857 CAGGCAGGGCCTCTGGAATAGCTCCAGGGAGCTGCACGCCCATAGCTT-GTGCTGTTGTTCTAAGC-CGCCCTTCACACATCAGGAATGTCAAACAGAGCTGACCTCAGCACC-CTGAGAGCCCCACTCCAAACAGAGCCCTGGGCTGTGCTCTCCAGCAGCAGGCAGA-TCTGGAGTGTTTGTCTAGTTTAAAACAAGCTAGTTGGATGGTGTATTACTTCTCCAACCAAATACTATTG-ACGCTGCATGCAC-AACCATCTCTACTGCTC----CTGAACTGCATGCATCGCTCAAGCCTGCTCAGCACATTTAGCAAGTGGAAAAGAGATGATTGTTTCTCATTTCACTGAAAAATTAGAAGGAATCAAAAAAAAAAAAAAAAAAAGATTTCCATGTGTTTCCTCCAGGCATCTCCTGATCCCTAGCCAACTCTGTGAACACACCCAGACTAGAA---CTTCCTTAATTCAGGAGCTTGACAG------TGATCCTCCTCCAAGCTGGGT--CCCTCCACACCAGTCAGGTCAATGGGGTCACCATACAAAGCCTGCAGGCTTG--------------GCCACTGACTG--TCTCTGCCCTTTACTAGGA---ACAGTCAAGAAGATAGTATTGTCATCTTCACATA------TCCTACACTTTTCTTAATCCTTTCCCGG--AGACGTTATCTTCTCCATTACAC----------------------------------------------------------------ACACACACAATTTTTTTTAGCTGGGCTCATAAGTGGCCTACCAGTTGCCA--TCTGGGCATCAAATCTTAGTGTTC-TTTCAGCTTATCAGCGACATCCCACACAGGGTATCATGCCCTATGGAAAATGAGTTCTTCCT-TAACTTC----------ATTTCCAGGCCTATTCTTTAGCTGTTCTCGTCACCATGGCCCTGTATTATTTTCTTACTTCTGCTAAAACAAGCCATTGAAAAGTTAGTGGCTTCAAACAACTTTCAAAAAACTGTATGTGATCTCATGGTTTTGAATAACAGAACTCCAAAAACAGCTTCTCTGGGAAAAAAAAAAAATCAGGATTTAGCAAGATCACCCTCTTCCTAAAAAGATCCAAGTGAAACCTTAATTCTG-GACTTTCCCAGCTGC-------------------------------------------------CCATGCTTCATGATCCCTCCCTCCCTTTCCAAGCCAATCTCACCCCTCCGACCTCCGCTTCTGTCCTTACATCTACTCTGGTGCTAATAGTATTGTTCCCTTTTT-TAAAGATGTT------------------GTAACTCTTTCAGAA-------CTATCTCATCATCTTT-TCTCATTTTCATCTGCAAAACCTCTTTTGACATATAGCACAGCATAGTGACAGCTTTGGGGACTAGGATGTTGGTTTCTTTGGAGATAATTGTTATGCTGATCACAA------CCCGGTCTCCAAAATTTTATACATAAAATTCATTCACATAATCCCAGCATCTATAGAAATCTAACCCATT--AATATTAAGTTCAAGTTTACAAA s rn3.chrUn 5819811 1458 + 75822765 CAGGCAGGGCCTCTGGAATAGCTCCAGGGAGCTGCACACCCATGGCTT-GTGCTGTTGTTCTAAGC-CGCCCTTCACACATCAGGAATGTCAAACAGAGCTGACCTCAGCACC-CTGAGAGCTCCACTCCAAACACAGCCCTGGGCTGTGCTCTCCAGCAGCAGGCAGACTCTGGAGTGTTTGTCTAATTTAAAACGAGCTAGTTGGATGGTGTATTATTTCTCCAACCAAATAATACTG-AAGCTGCACGCGC-AGCCATCTCTGCTGCTT----CTGTACTTCCTGCATCCCTCAAGCCTGCTCAGCATATTTGGCAAGTGGAAGAGAGATGACTGTTTCTCATTTCACTGAGAAATTAGAAGGAATCAAAAG---------------ATTTCCATGTGTTTCCTCCAGGCATCTCCTT------------------------ACCCAGACTAGCA---CTTCTGTGACTTAGGAGCTTGACAG------GAATCCTCTCCCTAGCTGGGT--CCCTCCACACCAGTC------ATGACTTCAGGGG-----GTC-ACTGTATAAGGCCTTCAGGCTTGGCCACTGCCTG--TCTCTGCTCTTTACTGAGA---ACAGTCAAGGGGACAGTATTGTTATCTCCACATA------TTTCACACTTTTCTTAACCCTTTCCTTA--AGATTTTATCTCCTCCATTTTACACGCACACACACACACACGCGCGCGCGCGCACACACACACACACACACACACACACACACACACACACACACACTTTT-----GCTGGGCTCTTAAGTGGCCTACCAGTTGCCAAGCCTGGGCATCAAATCTTAGTGTTC-----------TTAGCAATATCCCACACAGAGCATCACGCCCTATGGAAAATGAATTCTTTCT-TAACTTC----ATTTCCA------GGGCCATTCTTTAGCTGTTCTCATCACCATGGCCCTGTATTATTTTCTTACTTCTGCTAAAACAAGCCATCGGAAAGTTAGTGGCTTCAAATGACTTTCAAAAATCTGTAAGTGGTCTTACAGTTTTGAATAACAGAACTCTAAAAATGGCTCCTCTGG------GCAAAAATCAGGATTTAGCAAGATCACCCACCCCCT-GAAAGATTCAAGTGAAACCTTAATTCTG-GACTTTCCTAGCTGTCCATGCTTCATACTTCAGGGTCCCTCCTCTTTTTACAAGCCAATCTCATTCATAGTTCACGGTCCCTCCCTCTCTTTACAAGCCAATCTCATCCCTCTGATCTCTGCTTCTGTCCTTAAGTCTTGTCTGGTGCCAATAGTATTGTTCCCTTTTT-AAAAAACGTT------------------GTAACTCCTTCAGAA-------CCATCTC---ATCTTT-TCTCATTTGCATCAGCAAGACATCTTTTGACATATAATGCAGCATAGTGACAGGTTTGGAGATTAGGATGTTGGTTTCTTTGGAGGTTATTATTATGCTGACCACAA------CCCGACTTCCAAAATTTTATACACAAAAGTCATTCACATTATTCCAGCATCTATAAAAATCTAACCCATTGTAATATTAAGACAACGTTTATAAA a score=1668.0 s hg17.chr17_random 1070501 11 + 2618010 tctcatctaaa s panTro1.chrUn_random 236859426 11 - 240967748 tctcatctaaa s mm5.chr11 184272 8 - 121648857 ---AGTCTAAA a score=6321.0 s hg17.chr17_random 1070512 29 + 2618010 t-ttacttagttc--aagtgtcccaaatttca s panTro1.chrUn_random 236859437 29 - 240967748 t-ttacttagttc--aagtgtcccaaatttca s mm5.chr11 184280 30 - 121648857 TATAAACCAGTTT--TAAACTCCCAAACTTCA s rn3.chrUn 5821367 31 + 75822765 T-TAAATTAGTACATAAATATCCCAAGTCTCA a score=19873.0 s hg17.chr17_random 1070541 174 + 2618010 taatgtaaattagggttgggttag------ggtataatccatccagatgcataattctgctccacctgtaaacctgcaaaactcaagaaacaaatgatctgctgtcagacccaacattaggacaggcatcagttgacagttatagacattctcattcaaaaagggagaaaatggaaggaa s panTro1.chrUn_random 236859466 173 - 240967748 taatgtaaattagggttgggttag------ggtataatccatccagatgcataattctgctccacctgtaaacctgcaaaactcaagaaacaaatgatctgctgtcagacccaacattaggacaggcatcagttgacagttatagacattctcattc-aaaatggagaaaatggaaggaa s rn3.chrUn 5821398 162 + 75822765 TCGTCTCAGTCAGGAGTAAGTGAGGCTCTAGATATAGTCTATCCAGATGTATAGTATT-CTCCGTTCACAGGCCTA------TGAGGGGACAGTTACTTGCTCCTCAAGTATGACAATGTGGCA----------GACTGATATCAACCTTCCCATCA-AAAAGCAAGAAAATAAAAGAGA a score=139993.0 s hg17.chr17_random 1070715 1543 + 2618010 aaaaggagtcctcagtcccaagcactttgaaaaaccagctaagcaaacattagatttcaaggcctgagaaaataatcctctgtgggtcccaggtccaacatctgggctcatggctccacccttggagtcatccttcctttttcatgaaaggtagcacatgtttgccactgagtggttttatcagcctgcttccttcctgcagaattttggagagtccaacagtgctctttcatctttcatttcatactttctctgttcccttcagtccaagttggcagtgtttctgctgatataacattctcaagaactttgtggtctcctgtgtatgtcacacacaggattcactctatttcacaagaaggtcctccctaggcctttcacatagtcctatctctgtcttctgctgagatgactgagggactcctgagtcattcatctgaagtcttcaAAGGCTCCTCTGTGTGACTGAACACACTGACTTTTGATAGTCTCAAGGGACTGGTAGAATGTTGTCCAGCCACTGTGTTGGCTTTCTTTTCAGAGCACAGATTcatgcacatatgcacacatacatactgcacacacat-acatactatatacaatacagtgtgtatacatatagacacactacagcacatgcacacacacacacatTCTGCACACAATACTGCATGCATGCACATACGGCACAGCACATACATGCAC-AC-ATGCTGCAGCACACACAATACTGCACACAGAGCATACAATCCTGCAAGTACACCATACACAGTATGCACACATACCACATAAACCTTATGGATACCCTG-TGTATACACCAGATATGTTAAACATGCCTTGTGCACACACAGAATGCATGCAAACATATGTGCTCTGTACTCG-TAGAGAAACACATCCACACACACACCATACAACATGTGCACACCCACAGGAGTGATAGAGAAGCTATAATATAAACATGCAACTGTGCTCTAAGATCTTGCCTGATCATATCAGAGAAGCTACCAAGGCAGGGTTGAGAAGTGGGAGCAATGACAGGAAAGCAGACAGCAGAAATTGAAGGACCCAAAGCCAGACACAACCA-GGACCAGGTGCTCCCCAGCAGT-CTGGAGCATGAGCAGCATGGTGCCCAAGGTCTGG-ACATGGCTGTGTGGCCACATCTCACTGTAT--CGCCCCAGCAATGACCACATGTCCCCCACCAAGGAGGACACTTGTCCTGGGGCTGGGATGGTGACTCTGCTGAGCCCAGGGAACAGGAGCAGGCAAATTGGGGTGGGG-GTGGGGGGGTCCCAGGGTTCCTGCAGGCACTACCTCAAAGGTTACAGGAAGAGGGAGAACCAGACCAGAGAGGCCCTGCTGCACCCTTCAGGAGCAGATTGCCAGGAACATCAGGGATTCACCTGGCCCTGAGCTCAAGTCGCAGCACCTtgtgac-ttcaagcagactttgtaacccttaagtctcagcatcttcatccattaaagggagttggggaggcccaccccagagagctgctgtgaggacaaaatgagGGTCTGGAAGAGTA s panTro1.chrUn_random 236859639 1553 - 240967748 aaaaggagtcctcagtcccaagcactttgaaaaaccagctaagcaaacattagatttcaaggcctgagaaaataatcctctgtgggtcccaggtccaacatctgggctcatggctccacccttggagtcatccttcctttttcatgaaaggtagcacatgtttgccactgagtggttttatcagcctgcttccttcctgtagaattttggagagtccaacagtgctctttcatctttcatttcatactttctctgttcccttcagtccaagttggcagtgtttctgctgatataacattctcaagaactttgtggtctcctgtgtatgtcacacacaggattcactctatttcacaagaaggtcttccctaggcctttcacatagtcctatctctgtcttctgctgagatgactgaggggctcctgagtcattcatctgaagtcttcaAAGGCTCCTCTGTGTGACTGAACACACTGACTTTTGATAGTCTCAAGGGACTGGTAGAATGTTGTCCAGCCACTGTGTTGGCTTTCTTTTCAGAGcacagattcatgcacatacgcacacatacatactgcacacacatcacatactatatacaatacagtgtgtatacacatag--acactacagcacatgcatgcacacacacattctgcacacaatactgcatgcatgcacatacggcacagcacatacatgcaCGACGATGCTGCAGCACACACAATACTGCACGCAGAGCATACAATCCTGCAAGTACACCATACACAGTATGCACACATACCACATAAACCTTATAGATACCCTGCTGTATACACCAGATATGTTAAACATGCCTTGTGCACACACAGAATGCATGCAAACACATGTGCTCTGTACTCGCTAGAGAAACACATCCACACACACACCATACAACATGTGCACACCCACAGGAGTGATAGAGAAGCTATAACGTAAACATGCAACTGTGCTCTAAGATCTTGCCTGATCATATCAGAGAAGCTACCAAGGCAGGGTTGAGAAGTGGGAGCAATGACAGGAAAGCAGACAGCAGAAATTGAAGGACCCAAAGCCAGACACAACCATGGACCAGGTGCTCCCCAGCAGTCCTGGAGCATGAGCAGCATGGTGCCCAAGGTCTGGCACATGGCTGTGTGGCCACATCTCACTGTATAACGCCCCAGCAATGACCACATGTCCCCCACCAAGGAGGACACTTGTCCTGGGGCTGGGATGGTGACTCTGCTGAGCCCAGGGAACAGGAGCAGGCAAATTGGGGTGGGGCGTGGGGGGGTCCCAGGGTTCCTGCAGGCACTACCTCAAAGGTTACAGGAAGAGGGAGAACCAGACCAGAGAGGCCCTGCTGCACCCTTCAGGAGCAGATTGCCAGGAACATCAGGGATTCACCTGGCCCTGAGCTCAAGTCGCAGCACCTtgtgactttcaagcagactttgtaacccttaagtctcagcatcttcatccagtaaagggagttggggaggcccaccccagagagctgctgtgaggacaaaatgagGGTCTGGAAGAGTA a score=14663.0 s hg17.chr17_random 1072467 182 + 2618010 atgtgtgtgcagtatgtatgtgtgcatatgtgcatgaatCTGTCCCCAA----ACTACTCTCCTTTTTCTTCTATGGGAAAGGAACAGGAACAATGGACCAGTCATACAGCATCTCAGGGGCCCTAGCCCCCTGCTTGTTCCTCTGGGCTCTCCAGCCCAGCAAGGCCCCAGTCCTCCCTGTTGTG s panTro1.chrUn_random 236861395 180 - 240967748 ATGTGTGTGCA-TATGTATGTGTGCGTATGTGCATGAACCTG-----AACGCAACTACTCTCCTTTTTCTTCTATGGGAAAGGACCTGGAACAATGGACCAGTCATACAGCATCTCAGGGGCCCTAGCCCCCTGCTTGTTCCTCTGGGCTCTCCAGCCCAGCAAGGCCCCAGTCCTCCCTGTTGTG a score=10497.0 s hg17.chr17_random 1072649 79 + 2618010 GGTCCCTCACGAGCTGCCAGAGGGGGCGTGGTCCCTCACGAGCTGCCAGAGGGGGCGTGGTCCCTCACGAGCTGCCAGA s panTro1.chrUn_random 236861575 78 - 240967748 GGTCCCTCAGGAGCTGCCAGAGGGGGCGTGGTCTCTCACGAGCGGCCAGA-GGGGCGTGGTCCCTCACAAGCTGCCAGA s rn3.chr8 12394390 79 + 129061546 GGCACCACCCATGATGTCTGAGTGGGCGTGGCATCACCCAAGATGTCTGAGTGGGCGTGGCACCACCCATGATGTCTGA a score=1670.0 s hg17.chr17_random 1072728 41 + 2618010 GGGGGCGTGGCCCCTCACGAGCTGCCAGAGGGGGCATGGTC s rn3.chr8 12394469 41 + 129061546 GTGGGCGTGGCATCACCCAAGATGTCTGAGTGGGCGTGGCA a score=1173.0 s hg17.chr17_random 1072769 4 + 2618010 CCAC s panTro1.chrUn_random 236862510 4 - 240967748 ccac s rn3.chr8 12394510 4 + 129061546 CCAC a score=1928.0 s hg17.chr17_random 1072773 20 + 2618010 AGcactctagcctctgcctc s panTro1.chrUn_random 236862514 20 - 240967748 agcactctagcctctgcctc a score=96429.0 s hg17.chr17_random 1072793 779 + 2618010 tgtggacacatggcctcctcctct---tctgtcttctaagaatacttatcagtggact-agagcccacccagatagacaagaatggtctccccaactcaatacccttcacttaattaaatctgcaaagaccccttttccaaataaggtcacagtcccaggttctgggaattaggatgtggacatatatctttg--agggttaccctcagcccactacaGATGTTGTGTTAGGTGTTCCATATGGAAGCGTCCAGCACAAAGCAAAGATGCAAGAAGACGGCTGCAGGTGTTGCAACAGATGTGGTGGGGTTGTTTCCAGAACCTGCAAGCTCCACGGAGCAGGGACCTTCTCACCTGTGCCACCACCAAATTCCTAG--CCAATTAGACT-------GGGGTGGCCAGATGGATGCTTCTTGGGTCTCAGGGA--GTTAAATCTAGCTCCCTTCAACTGGGGTACACAGGCCCCAGCCTT-CACCTGGTCCTCTGCTCCCACCCACCTGCCCAGCATCCTCTTGTCAGATAGTGCTAGCCATGGCCCCCTTGAGGCATGGGCTGTGCAAGGTGGGGCCATGGCTGGCACTCAGTA-TGGGAGCAATGTCAGGTTTGGTGTCCCTGTTCCTCCACCCATCCAGAGGGAAG----ATGAAGGCCCGGGAAGTGGTGCCTCTCAGTGTCTCTTACAAAGCTGGCTCTTCCCAGACAGTCACCTGTTAATCTTTAGTGCTTCTCAGTGTATAGAGTTGGCTGGAAATGCCCCTCCGCCTCCCACTCATCTTCTACCCTGGCAGCAA s panTro1.chrUn_random 236862534 779 - 240967748 tgtggacacatggcctcctcctct---tctgtcttctaagaatacttatcagtggact-agagcccacccagatagacaagaatggtctccccaactcaatacccttcacttaattaaatctgcaaagaccccttttccaaataaggtcacagtcccaggttctgggaattaggatgtggacatatatctttg--agggttaccctcagcccactacaGATGTTGTGTTAGGTGTCCCATATGGAAGCGTCCAGCACAAAGCAAAGATGCAAGAAGATGGCTGCAGGTGTTGCAACAGATGTGGTGGGGTTGTTTCCAGAACCTGCAAGCTCCACGGAGCAGGGACCTTCTCACCTGTGCCACCACCAAATTCCTAG--CCAATTAGACT-------GGGGTGGCCAGACGGATGCTTCTTGGGTCTCAGGGA--GTTAAATCCAGCTCCCTTCAACTGGGGTACACAGGCCCCAGCCTT-CACCTGGTCCTCTGCTCCCACCCACCTGCCCAGCATCCTCTTGTCACATAGTGCTAGCCATGGCCCCTTTGAGGCATGGGCTGTGCAAGGTGGGGCCATGGCTGGCACTCAGTA-TGGGAGCAATGTCAGGTTTGGTGTCCCTGTTCCTCCACCCATCCAGAGGGAAG----ATGAAGACCTGGGAAGTGGTGCCTGTCAGTGTCTCTTACAAAGCTGGCTCTTCCCAGACAGTCACCTGTTAATCTTTAGTGCTTCTCAGTGTATAGAGTTGGCTGGAAATGCCCCTCCACCTCCCACTCATCTTCTACCCTGGCATCAA s canFam1.chrUn 84692692 671 - 91062872 TGTGGCCGCAT-CCCTCCGcccctgcctctcctttgtaaggacacatgccattgaattcaggaccgactcagat-------------------aactcag-gcccctcacttcattacacctgcaaacacacattttctacacggggtcccatccacagattccgggaaggaggaaggggac-----ccgttggtgggaccacaatcgggcctCTGCAGACAGTGTGCTGAAGGCTTCAGA-GCAAATGTCCGGCGCAAGACGGGGGCACGGGAGGCCAGCTGCAGGTGCAGTGACGGGTGCTGT-TGGTCATTTCTAGAGCC-GCGAGCT-CACGGGGCCGGGATCTGTCCTCCGTGGCCGTCACGGAGGCCCCAGACCCAGTCTGCCTGGCGGGGGGGGCTGCTGGCCGGACGCTTCTCTGCTCCCAGCGAGTGTTCGGTCGGGCTCTGTGCGGCTGGGGTGCTCAGGGTGCTGCCTTGCAGCCACTCCTCTGCTGCC-CACACCCG-------------------------------GTGTGTCCCCTGAG---------CTGCGAGGTG----CACGACTCGCACTCAGTACTGGGGG--------------------CTGCCCCTGCACCCACCCAGAGGGAGGCAGAAGGAAGGCTTGAGGAGCGGCGCA-GTCAGCATGCGT--CAGGGCAGGCCCTGCAGGGAAGGACACCGGTCTGCCCTGGGCCC--------------------CTGGAGG------GCCGCCTCTCACCCCTTTTC-------ACAGCGC a score=16756.0 s hg17.chr17_random 1073572 177 + 2618010 ----AGCTGCAGCTCCAGGGACACCGAGGAG------AGGCCAGCTGGCCACAG--TGTGTCAGG-GCAGCCGAGCTGGCC-CGCCATGCACTGTGTCCTTTCCACTGCACCACATCATCTCTGCAAAGCCAAGGGCTTCAGGAGCAGAGGGACAGGGCAACTCCTGGTGTTAACTTTGCCTCCAACCTTG s panTro1.chrUn_random 236863313 177 - 240967748 ----AGCTGCAGCTCCAGGGACACCGAGGAG------AGGCCTGCTGGCCACAG--TGTGTCAGG-GCAGCCGAGCTGGCC-CGCCATGCACTGTGTCCTTTCCACTGCACCACATCATCTCTGCAAAGCCAAGGGCTTCAGGAGCAGAGGGACAGGGCAACTCCTGGTGTTAACTTTGCCTTCATCCTTG s mm5.chr11 185616 143 - 121648857 ----AGCTGCAGCTCAAAGAAAGCTAATGAG------AGG-CTATAGGTCATAGGTCATGTAAGGAGTAGCCTAGCTGGCCTTGGCTGGAGATCTGTCCTCTCTA-------------------------CAAGAG-----AGAGCAG------GATGCTTATCCTATTTTT-ACCTTGCCTTAATCCTTC s canFam1.chrUn 84693363 132 - 91062872 AGAGTGCAGGTGCTCCGGGGCC-CCAAGGAGCCTGCTAGGCCAGCTCCTGGGAG--CATGTGGGG----CCCTGGCTGGCTCGGCCCTGCACGCTGCCCTCC----------------------------CAAGGGCGTCAGGAGCCGAGGGATGAGGGCCCCTCGG------------------------ a score=31945.0 s hg17.chr17_random 1073749 314 + 2618010 AGCCATTCCTGTGGCAGGTGGCATTGTACACTCACAGTC-CTTCCTTCCCTCCCAGTCCCAGCACCATGGATTGG-AAATGGGACTTGCTGTGACCACTGAAGTGTGG--AAGGGGACAGTGGGGGCAGTTCTGAGTACAGGT----------AAGTATGTGCTTCCACTTGCCCTCCTGCACGCCTGGCCTGGGAAGTGCCCCGGGGGGACCTTCTGCCTCTTCC----ATCAGGTCTCAAAATGAGAG-----CCAAGCCACACACCTGAGAGGCACCTGCAGCCTGAAGTAGATG---CTGCGGCCACTACACCGACATAGGCATGAGAGACAAACA s panTro1.chrUn_random 236863490 314 - 240967748 AGCCATTCCTGTGGCAGGTGGCATTGTACACTCACAGTC-CTTCCTTCCCTCCCAGTCCCAGCACCATGGATTGG-AAATGGGACTTGCTGTGACCACTGAAGTGTGG--AAGGGGACAGTGGGGGCAGTTCTGAGTACAGGT----------AAGTATGTGCTTCCACTTGCCCTCCTGCATGCCTGGCCTGGGAAATGCCCCGGGGGGACCTTCTGCCTCTTCC----ATCAGGTCTCAAAATGAGAG-----CCAAGCCACACACCTGAGAGGCACCTGCAGCCTGAAGTAGATG---CTGCGGCCACTACACCGACATAGGCATGAGAGACAAACA s mm5.chr11 185759 270 - 121648857 AGCCA-CCCCATAGCAGAAG--ATTGT------------------TTTCCTCCCATCCTCAGTACCACAGA-TGG-CCATGAAACCTGGTGTAAATATTGGAATGTGGTCAACAGAACA--AGGAATTGTTCTGAGCAAAGGTTTCAGAGGCAAAACACATCCTGCTA---ACCCTCTTGCAGTTTCTGTCTGGAACTTGCCCTATCATG--CTTCTGCATCTTCC----ACAGGATCTTAGAAAGAGGG------------------ATGAGGAGTGACTCTAATATG----AGATG---TTGCGGCAG--AAGCGGAAAT-----TCAGAGAAG---- s rn3.chrUn 5822713 276 + 75822765 AGCCACTCCCGTAGCAAAAT--ATTGT------------------TTTCCTCCCATCCTCAGTACCACAGGTGGGCACACGGGACCTGG-GTAAGCAATGGAATGTGGTTGAACGGACA--AGGAGTTGCTCTGAGCAGAGGTTTCAGAGGCAAAACACATTCTGCTC---AACCTCTTGCAGTTTCTGTCTGGAACTTGCCCTGTCGTG--CTTCTGCATCTTCCTTAGACCCTTCCTTAGAAAGAGGGAAGAGAAAAGACTCTAATATGAGATGT----------TGTGCCAGAAG-----------------CAGAAAT-----TAAGAGAAA---- s canFam1.chrUn 84693495 262 - 91062872 GGCCATGTCCTTGGAAAACG-------GCGCCTGGAGCCAAGTCTTGCCCCACCGCAGCCGCCACCCCAGCCTGT------------------------GAACTGTGG--GAGAGGGCA--GTGGGCGGGTCTGGGCAGGGGC---TCAGACACGAGACCTGCTGCTGCTCATCCTCACGC---CCCGGC--------TGCTCCACGGGA--------------------GGACAGGCCCAGGGAGCGGG-GCCTCCGGTCCGGGTGCCAGAGAGACAAGCGCAGGCCC----AAACGCCCCCGCGGCCTCGACGCACACGCGTGAGCGAGAGACA---- a score=38538.0 s hg17.chr17_random 1074063 227 + 2618010 GCTTCTTCTAAACCACTGGGATTGGTGGGGCCATTTGTTACACAGCATTATTATAGCAATAGCTGACCAATAGAgaatttggtgccaaaagtaggtgctgccgtaataaaacctaaagtattaatatgtggcactggctgatagactgggtggtgaataaactactttagaaagtcagggaatggcaacttgtgacatgtaa---------tggtaaaaaaaaaatcactaacatg s panTro1.chrUn_random 236863804 226 - 240967748 GCTTCTTCTAAACCACTGGGATTGGTGGGGCCATTTGTTACACAGCATTATTATAGCAATAGCTGACCAATAGAgaatttggtgccaaaagtaggtgctgccgtaataaaacctaaagtattaatatgtggcactggctgatagactgggtggtgaataaaCTACTttagaaactcggggaatggcaacttgtgacatgtaa---------tggt-aaaaaaaaatcactaacatg s mm5.chr11 186029 142 - 121648857 -----TCCTAACCCAGTGGGATCAGCAGGG-CAGTTAGTGTACAGCACTGTTGTAGCAATAGCTGA-----AAAGGATCTGGGGCCCAAAGCAG-----------------------------------------------------------------------------------GGAAACGGCAAATTGTGTTATGTAATTTTTGTTTTGTTTTGTCTTAAATCACAAAAGTG s rn3.chrUn 5822989 147 + 75822765 -----TCCTAAACCAGTGGAATCAGCAAGG-CAGGTAGTATACAGCATTGTTGTAGCAATAGCTGACTAGAAAAGAATCTGGTGTCAAAAGTTG-----------------------------------------------------------------------------------TGAAATGGCAATTTGTGTTATGTAATTTTTGTTTTGTTTTGTTTTAAATCACAAAACTG a score=48529.0 s hg17.chr17_random 1074290 89 + 2618010 ggctcctgtaataacttagaaagcaggaaacatacccaatgtaatcctggcattgggtgaaaagctttccaagcaaaatgtctctagag s panTro1.chrUn_random 236864030 89 - 240967748 ggctcctgtaataacttagaaagcaggaaacatacccaatgtaatcctggcattgggtgaaaagctttccaagcaaaatgtCTCTAGAG s mm5.chr11 186171 83 - 121648857 ----CCTCCAATAACCTAGAAAACAGGAAATGTACCTAATGTAGCCCTGGCTTT--GCAAAGAGCTTTCCAAACAAAACATCACCAGAA s rn3.chrUn 5823136 83 + 75822765 ----CCTCCAATAACCTAGAAAACAGGAAATGTACCTAGTGTAGCCTTGGCTTT--GCAAAGGGCTTTCCAAGCAAAACATCACCAGAA s canFam1.chrUn 84693914 88 - 91062872 GGCTCCTGCGTTGTCCTGGAAAACAGGAAACGCACCTAACGCAACCCCAGCTCCAGGCGAAGGGC-TTCCAAGCAAAATATCCCGGGGG a score=52333.0 s hg17.chr17_random 1074379 221 + 2618010 tgaa-taatcattgctactgcatttgataaagtacctcaa----gaaaaagataagctcagaaaggaaagccaagcttgcagcagaattgagagaaaa-catagggagctcagaaattCTAGCATTTGCAAGATTAAAAATTTAGGC--TTTTTTCAGCCAATAATT----AATATAT----TGAGGAATATCTTGAGCTAGAAAAGCTTTTTAAGAATTAAAACTTAGCATCAGGG s panTro1.chrUn_random 236864119 221 - 240967748 TGAA-TAATCATTGCTACTGCATTTGATAAAGTACCTCGA----GAAAAAGATAAGCTCAGAAAGGAAAGCCAAGCTTGCAGCAGAATTGAGAGAAAA-CATAGGGAGCTCAGAAATTCTAGCATTTGCAAGATTAAAAATTTAGGC--TTTTTTCAGCCAATAATT----AATATAT----TGAGGAGTATCTTGAGCTAGAAAAGCTTTTTAAGAATTAAAACTTAGCATCAGAG s mm5.chr11 186254 230 - 121648857 TGAATTAGTTGTTTCTACTGTGCTCAGTAACATACCTTGAAGGGGAAAAAGTTAATCCACAAAAGAATAAGCAAATTGGCAGAAGAACTGAGAGAAAA-TATAGGAGTCCCAGAAG-TATAGCTTTTGTGAGACAAAAAACTGTGATTGTTTCTTCAGCTGATAATTGTGGAATATTC----AATCTAGGGCCTTCAACTAGAAAAGGCTTCC-AGAATGTAAGAGAGTTATCAGGG s rn3.chrUn 5823219 227 + 75822765 TGAATTAGCTATTTCTACTACGCTCA--AAAACACCTTGAAGGGGAAAAAGTTAATCCACAAAAGAATAAGTAAATTGGCAGAAGAACTGAGAGAAAAGTAGAGGAGTCCCAGAAG-TATAGCTTTTGCAAGACGAAAAAATGTGATCATTTCTTCAG-TGATAACG----GAGGAATACGCAACCAAGGACCTTTAACTAGAAAAGACTTCC-AGGGTGTAAGA-AAGCATCAAGG a score=7839.0 s hg17.chr17_random 1074600 81 + 2618010 CACCGTGAATTCGAGTGCAGACCCCAGGCCCCACCTCAGGGCTCAGGATGACACCCCCTGATGGCCGCCTGTTCACATCCG s panTro1.chrUn_random 236864340 81 - 240967748 CACCGTGAATTCGAGTGCAGACCCCAGGCCCCACCTCAGGGCTCAGGATGACACCCCCTGATGGCCGCCTGTTCACATCCG a score=10154.0 s hg17.chr17_random 1074681 79 + 2618010 AGGCAACTAAGAACAGA-----GGAGGCGACTCTCAGAGCCCCGGCATCTGGGATGTGGGCACCCTTGGCAGCCTCAGGGATTT s panTro1.chrUn_random 236864421 79 - 240967748 AGGCAACTAAGAACAGA-----GGAGGCGACTCTCAGAGCCCCGGCATCTGGGATGTGGGCACCCTTGGCAGCCTCAGGGATTT s mm5.chr11 186566 78 - 121648857 AGGCAG--AAAGACAGACAGACAGACACAACTCTCAAAGAGCAAG-GTCAAGGA---GTGAACACTTTGCAATCATAGGGATTT a score=54027.0 s hg17.chr17_random 1074760 247 + 2618010 CTGCCACCGTGGGCCTTATCTCAGTGTTTTCAGTAGTTGGAACAGCCCCATAGCAGCCGCTGAGTCTGCCATCCTGTTATGAAGGAAATACGCTGAGGGAAAGGGGGTATGAGGCTGGCGC--AGACAATAAACAGAGGTGTGCCAACCGGGAAACACAACACACAGGGAGGCTGCAGTCATCACCCGCAGACACCAACATCCCTGCCCTGAACTAACCTTCCCCGCGTCTCGATTCTCTGCCAACAGC s panTro1.chrUn_random 236864500 247 - 240967748 CTGCCACCGTGGGCCTTATCTCAGTGTTTTCAGTAGTTGGAACAGCCCCATAGCAGCCGCTGAGTCTGCCATCCTGTTATGAAGGAAATACGCTGAGGGAAAGGGGGTATGAGGCTGGCGC--AGACAATAAACAGAGGTGTGCCAACCGGGAAACACAACACACAGGGAGGCTGCAGTCATCACCCGCAGACACCAACATCCCTGCCCTGAACTAACCTTCCCCGCGTCTCGATTCTCTGCCAACAGC s mm5.chr11 186644 221 - 121648857 CTGCT-TTGAGGGGCTTATCTCAGTGTTTTCAGTAGCTGGAACAG-CCCAGGGCAGCAGCTTTGTCTGCCATCCTGTTATGAAGG---------------AAGGGAGTGTGA--CTGACAC--AGACAAT-AACAAAAGTGAGCCAAGAAAG-AACAGGACACCCA-AGAGGCTA-AATCAT-GGCTGATGACACCACTA-CCCTGCCCTGAGCTAACCTTCATGGTATCT-GAGCCTCTGCCAACATG s canFam1.chrUn 31609478 203 - 91062872 CTGCCGTCGTGGCGTCTGTCT--GTGTTTTCAGCGACTGGCACAGCCCC--GACAGCGGCCACGTCCGCCATCCTGTTATGAAGGAAACGCGCCCAGGGGAAGGG-GCGTGA-GCCGACGCGGAGACAATAAACAGAGGTGAGCCAAGAGGGCAGCGGGGTGACCAGGGCGGCCGC-------------------------CTCTGCCC--------ACGGCCCGGCACCT----CCGCAGCCAGC--- a score=5835.0 s hg17.chr17_random 1075007 24 + 2618010 GTTTTTACTTCAAACCAGCACAGC s panTro1.chrUn_random 236864747 24 - 240967748 GTTTTTACTTCAAACCAGCACAGC s mm5.chr11 186865 24 - 121648857 CATTTGATTTCAGACCAAACCAGC s rn3.chrUn 5823636 24 + 75822765 GGTTTGATTTCAGACCAAACCAGC s canFam1.chrUn 31609681 23 - 91062872 GCTTCCCTTCCACGCCCGCCTCC- a score=56194.0 s hg17.chr17_random 1075031 250 + 2618010 CAGGTCA-CCCGCATCAGGAAGGGCAGAAGGTCATCCAGCCTGGACCTGGGGCCCTTCACCCCCACTCCTGTGAGGAGGCCTTCTGTGGCCTC--AGCC-------CCCAGGGCCCTGCCAAGAACCTGCCATCCTGGACATTTG---------CTCAGCCTGCCTGG---------------------------GAAACAGAGC---------------------------TCATCCTgcgtggc-------------cagcaa--cag--------agaag--ctgggatttggagctagatcaggtctaaatcttggc-----tctgcca----cttcctgtgtggccctggac s panTro1.chrUn_random 236865273 250 - 240967748 CAGGTCA-CCCGCATCAGGAAGGGCAGAAGGTCATCCAGCCTGGACCTGGGGCCCTTCACCCCCACTCCTGTGAGGGGGCCTTCTGTGGTCTC--AGCC-------CCCAGGGCCCTGCCAAGAACCTGCCATCCTGGACATTTG---------CTCAGCCTGCCTGG---------------------------GAAACAGAGC---------------------------TCATCCTgcatggc-------------cagcaa--cag--------agaag--ctgggatttggagctagatcaggtctaaatcttggc-----tctgcta----cttcctgtgtggccctggac s mm5.chr11 186889 288 - 121648857 CAGGTCA-CCCAAATCAGGATTAGC--------------TCTGGTCCTGGG--CCCAAACCCTTACCCTTGTCAGGAGACTTGC-ATAGCCTC--CGCC-------CCCAGGACCCTGCCAAAAACCTGCCAGTGCAGATGTTTGTGAGGCTGCTCCAGTGCGCCAGGGTTACACTGGGAAGGGAGGTACTTTTTGAAGCTGTGG---------------------------TCACTGTGTTTGGTGTACAGAACATGACAGCAAGGAGG--------AGAAGTTCTGGGATTTAGAGCCAGACTTGGTCCAAATCCTGGCT--GTTTTGTCA-----TAATCATGTGGCTCTGAGC s rn3.chrUn 5823660 291 + 75822765 CAGGTCACCCCAAAGCAGGATTGGC--------------TCTGGTCCTGGG--CCCAAACCCTTACCCTTGTCAGGAGACTTGC-ATAGCCTC--CGCC-------CCCAGGACCCTGCCAAAAACCTGTCAGTGCGGATGTTTGTGTGGCTGCTCCAGTGAACCAGG---------------------------GTTACACTGGGAAGGGAGGTACTTTTTGAAGCTGTAGTCACTGTGTTTGGTGTACAGAACATGACAGCAAGGAGG--------AGAAAGTCTGGGATTTGGAGCCAGACTCTGTCCAAATCCTAGCTCAGTTTTGTCA-----TAATCATGTGGCTCTGAGC s canFam1.chrUn 31609704 252 - 91062872 CGCGT---CCCGCAGCAGCATGGGGCAGGGGGTGTCCCCCCGGACCCAGGAGCCCTCCTCCCCTCGGCCCCTCGG-----CCCC-GCAGCCCCGTGGCCCAGCAGGCCCTGAACCCCACCAGGAGCCCGGCGCCCCACACGCGTG---------CTCGGCCCGCCCGC---------------------------GAATCGG-GC---------------------------TCATCC---------------------CAGGAAGGGAGGCCCCCCCAGGAG--CCGTGGTC----GCCGCCTTTGGTCCCAAATGCTGC-----CCCGTCACCTCCGCACCGTGCGGCCCTGGGC a score=15249.0 s hg17.chr17_random 1075281 46 + 2618010 ------------ttccctgagtctcgatatacatgtatgtgaacccgaaacacaacca s panTro1.chrUn_random 236865523 46 - 240967748 ------------ttccctgagtctcGATATACATGTATGTGAACCCGAAACACAACCA s mm5.chr11 187177 58 - 121648857 AAGTTGTTTATGCTCTTCGAGTCTCAACATCCATTTGTGCGAATCAAAAATACCACTA s rn3.chrUn 5823951 58 + 75822765 AAGTTGTTTATGCTCTTTGAGTCTCAACATCTATTCACGTGTATCAAAAACACCACCA a score=5622.0 s hg17.chr17_random 1075327 54 + 2618010 ctgcaatct-tgaggtgttgtggagtggttgagaGGTGTGCACATTCTCTAAAAG s panTro1.chrUn_random 236865569 54 - 240967748 CTGCAATCT-TGAGGTATTGTGGAGTGGTCGAGAGGTGTGCACATTCTCTAAAAG s rn3.chrUn 5824009 53 + 75822765 CTACCAGCTGTGGTATGTGATAGAAAAAGCAAAAG--ATGCTCATTGTCTGGCAG a score=5821.0 s hg17.chr17_random 1075381 57 + 2618010 ACCACTTGAGCAATAGCTGGTTCTTTGAAAGTCTTGCTGGGACAACAGAGGAAGAGC s panTro1.chrUn_random 236865623 57 - 240967748 ACCACTTGAGCAATAGCTGGTTCTTTGAAAGTCTTGCTGGGGCAACAGAGGAAGAGC s rn3.chrUn 5824404 54 + 75822765 ATCATACTAACAGTA---TGTCCCCTAAACATCTCATGGGTGGAATAAATACAAGAC a score=0.0 s hg17.chr17_random 1075438 8 + 2618010 AGGGGTAG a score=459.0 s hg17.chr17_random 1075438 7 + 2618010 AGGGGTA s panTro1.chrUn_random 236865680 7 - 240967748 AGGGGAA a score=300.0 s hg17.chr17_random 1075445 1 + 2618010 G s panTro1.chrUn_random 236865687 1 - 240967748 G s mm5.chr11 187681 1 - 121648857 G a score=170042.0 s hg17.chr17_random 1075446 920 + 2618010 GAGGGGGCTGACGACGAG---------GACGATGACAGGATTATAAGGAACC-AAGACCGCTGCCGGCAAACCCCCTGCTCCATAAATGTGCAAGG---CAGCACGGGT--AGGAAGCGTCACACACAACCCCGGCCAGAGCCAGGCGACACGCCGAGAAACCCTAACACGACAGTGGCATTGTCGGA---AACTGATTTACTTTGTTCAAAAAAAATGCGATAATCTTGGAAAACTAGCAAAATCCCAAGTGTGACTTGAAGACAAAGCACAGGCACTCCAGGGATCAAACCAAGAAG--------AAACACGGTGAGGGGTTTACATTCTGGAATGCATTGGAAGCAGCCCAGTTTCATCACCTCCGATGGCCAACGGCGGCACAGATGGTCTGCGTGAAGAAACACGAGCCCTGC-TGTCTCGGGCGTCGGT---------GCCTTTGTGGCAGCACTGGCATCTCTCTTTCCTCAAAGTTTAAATTCTGTTTTGATGTCAGCAACACGTCAACA---CTCATATTCTAGG---GAGCAAATTTCTCC--TTCTGCTCCTTATGGCTAATGCAAAAGTAAACGCCAATTTACTTTTGTCTAAATTATTGAAATTTCAAGTGGAATCACATAGGATTCAGATAAATAGGATTTTC-CTGTTTTTGCTGTCGT--------CTTCTTAAAATGGCACATAAGCTTCCCTCCCCCTCCACTCACCCCGTGACTTCCTTCTGGTCCACACCCTCCCTCAGGGCCCAGCATCTTCTCAGAGGGTGTAGAAACTCGAACTTTCACAAAACACAGAGGCCAGCCCGGCCCTGTCCTGAGCCGGTCTCATTATTTCCTGTCTGCGGACAGGCCCAGACCTCAAGGAGACTACACACTGTGAGACTGTCTTTGCCACAGGCTACCCTGGCCCAAGGT---------GGAGGAGCAAAGCCACCCCACAGGCCTCCCAGACATACCCCA s panTro1.chrUn_random 236865688 920 - 240967748 GAGGGGGCTGATGACGAG---------GACGATGACAGGATTATAAGGAACC-AAGACCGGTGCCGGCAAAACCCCTGCTCCATAAATGTGCAAGG---CAGCATGGGT--AGGAAGCGTCACACACAACCCCGGCCAGAGCCAGGCGACACGCCGAGAAACCCTAACGCGACAGCGGCATTGTCGGA---AACTGATTTACTTTGTTCAAAAAAAATGCGATAATCTTGGAAAACTAGCAAAATCCCAAGTGTGACTTGAAGACAAAGCACAGGCACTCCAGGGATCAAACCAAGAAG--------AAACACGGTGAGGGGTTTACATTCTGGAATGCATTGGAAGCAGCCCAGTTTCATCACCTCCGATGGCCAACGGCGGCACAGATGGTCTGCGTGAAGAAACACGAGCCCTGC-TGTCTCGGGCGTCGGT---------GCCTTTGTGGCAGCACTGGCATCTCTCTTTCCTCAAAGTTTAAATTCTGTTTTGATGTCAGCAACACGTCAACA---CTCATATTCTAGG---GAGCAAATTTCTCC--CTCTGCTCCTTTTGGCTAATGCAAAAGTAAACGCCAATTTACTTTTGTCTAAATTATTGAAAATTCAAGTGGAATCACATAGGATTCAGATAAATAGGATTTTC-CTGTTTTTGCTGTCGT--------CTTCTTAAAATGTCACATAAGCTTCCCTCCCCCTCCACTCACCCCGTGACTTCCTTCTGGTCCACACCCTCCCTCAGGGCCCAGCATCTTCTCAGAGGCTGTGGAAACTCGAACTTTCACAAAACACAGAGGCCAGCCCGGCCCTGTCCTGAGCCGGTCTCGTTATTTCCTGTCTGCGGACAGGCCCAGACCTCAAGGAGACTACACACTGTGAGACTGTCTTTGCCACAGGCTACCCTGGCCCAAGGT---------GGAGGAGCAAAGCCACCCCACAGGCCTCCCAGACATACCCCA s mm5.chr11 187682 881 - 121648857 GAGTCAGTACAAGATGAGGAGATCTGTGACCCTGGCAGCATTGTAAAGGGCCTGAAGCCAGTACCCACAGAATCTGTGC-CCATAAATGTATATTA----GGCATGGATGAAAAAAATGTCATCAACATTTCTGGCCAGAACCATACAACAAGGCAAG--ATCCAAACATGGCCTTGGTATCACAAGATTCAATTCATCTTCTTAGGAAAACAAAAAGGCAA------TGCAAAGCCGGC--AGTCCCAGGAGTGACTAAAAGAGGAAGCA---ACGCCCCAGCAACCAAGCCATGGAGATGTGTACAGAAGCAGAGAGGAGCCAGTGCCTGGGAAGGTGCTGGAGG-GTACCACTTGTGCTGCCTCCAGAAGAGAATGGCAGCATTAC--ATCTGTGAGAAGAAACCCCAATACAGCTTTTCTTGAGCATCAGCCGTTGCATAGCCTCTACCATGGTAT--GCTTCTGCTTGACAACAAAAACCAAGGTTGGTTCTGATGTCAGTAACA----AACATTTTTCATATTTTTAGCCTGTGCAGCTTCTCTCAGCTCTGCTTCTCATAACTGATACAGAAGACAACTCTGAGCCACTCT--TCTGAAGTGCCACAAATTCAAAGGAGA----GTAAGACCGAGGTCAGAACCACTTTCTCCCTCTTTCCTGCCTTCAGCGTCACTTTCTAAAACAGTGCA----------------------------AGGACTTCTTTTT------------------GGACCTTGGACTTTCTTGGAGA-TCCAGAAACTGGAGCCTTC----AACACGGAGGTTTGTCTGGCCCTGACTTGAGGAAGTTTCATTATTCCTTTTCTATGGATGGAGCCAGACTTCAAAGAGACCAC-----------CTGT-----CCAGATGCT-CCCTGCTCCAAGATCATTTCACCTGAGGACCCAAGCCATCTTCCAAGGCTTTCTAGCATGCTCCA s rn3.chrUn 5824458 831 + 75822765 GAGGAGGCTGAGGCCTGT---------GA-ACCGACAGCATTATCAAGACCCTGAAGTCAGTGCCCACAGAATCTGTGC-CCATAGATGTCTATGTATTAGGCCTGGATG-AGAAAATGTCACAC-CATTTCTG---------AGTCAACAAAATAGG--ATCCAAACATGGCAGTGGTACCGTAGGATCCAATGTACCTTCTTAGGGGAAAAAAA--GCAG------TGAAAAGCTGGC--AGCCCCGGGAGTGACT--AAGAGAAAACA---AAGCCCCAGCAACTGAACCTCGGAGAAGTTTACAGAAACAGAGGGGAGCCACTGCCTGGGAATGCACCGGAGG-ATACCACTTTTGCTGCCTCCAGGAGAGAA--ACAGCACATCACATCTGCGAGAAGAAACCCAAACACAGTTTTTCTTGAGCATCAAAAGTTGCATAGCCTCTACCATG--GCCTGCTTCTGCTTGGAAACAAAAACTAAGGGTGGTTTTGATGTCAGTAACA----AAAA-TTTTCATATTTTTAGCCTGCACAGCTTCTCCCAGCTCTGCTCCTTATAGCTGATACAGAAGACAACACTGAGCCACTAT--TCTGAATTGTCACAAATTCAAAGGAGA----GTAAGACTGAGGTCAGTGCCATTTTC------------------------------TCAAACAGTGAAG---------------------------AGGGCTTCTTTTTGGACCTCAGACTTT------------------CTTAGAGA-TCCAGAAACTGGAGCCTTC----AACACAGAGGTTTGTCTGGCCCTGACCTGAGAAAGTTTCATTCTTTCTTTTCTATGGATGGGGCCAGACTTCAAAGAGACCATCTGTCAAGATGCTCCCTACTCCA-AGATCACGTTAACC---------------TGAGGACTCGAGCCATCCTCCAGGGCTTTCTAGCATGCTCCA a score=2648.0 s hg17.chr17_random 1076366 49 + 2618010 --ACCGCAGCTGGAGGTGAGCGTCTCTCTGCCTGGACCTGCTGTGCTCATC s panTro1.chrUn_random 236866608 49 - 240967748 --ACCGCAGCTGGGAGTGAGCGTCTCTCTGCCGGGACCCGCTGTGCTCATC s rn3.chrUn 5825289 31 + 75822765 CAAACAT-GCCTACGGTGAACTTATCCCTTCC------------------- a score=91.0 s hg17.chr17_random 1076415 1 + 2618010 A s rn3.chrUn 5825320 1 + 75822765 A a score=11615.0 s hg17.chr17_random 1076416 96 + 2618010 AATCGACGGCAGCCTGCACGGACCACAAGGGGCTTGTGAGTT----CCTGACG------CTGCC-CCGCCAGTTACTTTAGCCAGGGCGTTTGCCCTCCTGTGGAAG s panTro1.chr19_random 54949967 96 - 57627672 AATTGACGGCAGCCTGCACGGGCCACAGGGGGCTTGTGAGTT----CCTGACG------CTGCC-CCGCCAGTTACTTTAGCCAAGGCGTTTGCCCTCCTGTGGAAG s rn3.chrUn 5825321 96 + 75822765 AACCGACTAGAACCTTCA-----------GGCTCTGTGAATTCCAGCCTGATGTCATTTTTGCCATCAGCAATAATGCTGGCCAGGACGATCATCCTCCCTTGGAAG a score=34283.0 s hg17.chr17_random 1076512 383 + 2618010 TTCAATGTCTTCATGTAAAACAAAGGCAGTTGATACCTCCAGGGCCCTGGCACTCCAGCTGTCTGTCTCTGGTGACTGGACCTTCTCTGGATAGCTGCACAGGACCTGGTTCTCCCGGCCATCTGGGACCCTCTGTGCTAGGCCCTAACTTCCAGAAGGCTCAGTCACAGTTATTCCCCTTCTCACACACGAGCAGTGAGTCTGTGTGCACGTGGGAGAGCTCTGCTGGGTCCTGGTGCTAAGCTCTCTGGTGGGTGCTGCAAGGTTGTCCGAGCTCTCCAGGTCGCCCCTCCAAGGTGGCTGACAAACATAAGTTCTGTCCCAACCATGGCTCCTGAGTGCCTGTTGTCTACCCCTCACCCATCCCAGCAAACAGCAGCCAC s panTro1.chr19_random 54950063 381 - 57627672 TTCAACGTCTTTATGTAAAACAAAGGCAACTGATACCTCCAGGGCCCTGGCACTCCAGCTGTCTGTCTCTGGTGACCGGACCTTCTCTGGATAGCTGCACAGGACCTGGTTCTCCGGGCCATCTGGGACCCTCTGTGCCAGGCCCTAACTTCCAGAAGGCTCAGTCACAGTTATTCCCCCTCTCACACACGAGCAGTGAGTCTGTGTGCACGTGGGAGAGCTCTGC-GGGCCCTGGTGCTAAGCTCTCTGGTGGGTGCTGCGAGGTTGTCCGAGCTCTCCAGGTCGCCCCTCCAAGGTGGCTGACAAACATAAGTTCTGTCCCAGCCATGGCTCCTGAGTGCCTGTTGTCTACCCCTCACCCATCCCAGCAAACAGCA-CCAC a score=31872.0 s hg17.chr17_random 1076895 186 + 2618010 TCAGCAAGCCCTTCCTGGAGGGATCCACATCCTGAAATGGCCCCCCAGTGTGGGAAAAGCCCAGAGCGCCACGCTGACACCCGGAGCCCAGGGCCGACAGTGGCAGCTTCTGCTGGGGGTCATGTGGGTCAGGGCAGTGCTCCCCACCCTCAGGTGATGCCCGAATGCCCTCCAGGAATGACACAG s panTro1.chr19_random 54950444 186 - 57627672 TCAGCAAGCCCTTCCTGGAGGGATCCACATCCTGAAACGGCCCCCCAGTGTGGGAAAAGCCCAGAGCGCCAAGCTGACACCCGGAGCCCAGGGCCGACAGTGGCAGCTTCTGCTGGGGGTCATGTGGGCCAGGGCAGTGCTCCCCACCCTCCGGTGATACCCGAATGCCCTCCAGGAATGACACAG s canFam1.chrUn 31610554 174 - 91062872 TCAACGGGCCCTTCTTGGAGGAACCCACATCTTGAAACTGCCCC---GGGGCAGGAAAGACCAGAAGGCCATGCTGGC-CCTGGGGCGCAGGGC--------ACAACCGCCACCGGGAGATATGCGGGTCAGGGCAGCTCTCCACACCTGCAGGTGCCCCCCAAGTGTCCCTCCGGGATGCCAGAG a score=2313.0 s hg17.chr17_random 1077081 53 + 2618010 AGGTGGCATCTGGGTGGTGGACATACACCCCCAGGTGTGGAATACAGGCCCAT s panTro1.chr19_random 54950630 34 - 57627672 AGGTGGCATCTGGGTGGTGGACATACACCCCCAG------------------- a score=-304.0 s hg17.chr17_random 1077134 26 + 2618010 CCCCGCTGTACCCCCCGGGTGTGGAA s panTro1.chr19_random 54950664 8 - 57627672 ------------------GTGTGGAA s rn3.chr7 71130722 24 - 143082968 CCCCTCTGCACCCTCC--AAGCTCAC a score=10625.0 s hg17.chr17_random 1077160 58 + 2618010 AGCCAGGCCCATCCCCCCT--GCA-CCCCCCAGGCGTGGAAAGCCAGGCCCATCCCCCCTG s panTro1.chr19_random 54950672 59 - 57627672 AGCCAGGCCCATCCCCCCT--GCACCCCCCCAGGCATGGAAAGCCAGGCCCATCCCCCCTG s rn3.chr7 71130746 60 - 143082968 AGTCCACTGTATGCCCCCTGGGCA-CCCTCCAGGCTCACAGTGCACTGCATGCCCCCTCTG s canFam1.chr24 2272851 58 - 50732077 AGTCAGCCTGGTGTCCCCT--GCA-CCCCAGGGCTAGGGAGGGTCAGCCCGGTGTCCTCTG a score=3585.0 s hg17.chr17_random 1077218 28 + 2618010 CACCCCC--CAGGCGTGGAAAGCCAGGCCC- s panTro1.chrUn_random 236867519 28 - 240967748 CACCCCC--CAGGCGTGGAAAGCCAGGCCC- s rn3.chr7 71130806 28 - 143082968 CACCCTC--CAGGCTCACAGTGCACTGCAT- s canFam1.chr24 2272909 31 - 50732077 CACCCCCAGAGGGCTAGGGAGGGTCAGCCCG a score=5354.0 s hg17.chr17_random 1077246 38 + 2618010 ATCCCCCCTG--CACCCCC--CAGGCGTGGAAAGCCAGGCCC- s panTro1.chrUn_random 236867509 38 - 240967748 ATCCCCCCTG--CACCCCC--CAGGCGTGGAAAGCCAGGCCC- s rn3.chr7 71130834 38 - 143082968 --GCCCCCTGGACACCCTC--CAGGCTCACAGTCCACTGCCT- s canFam1.chr24 2272940 41 - 50732077 GTGTCCTCTG--CACCCCCAGAGGGCTAGGGAGGGTCAGCCCG a score=5585.0 s hg17.chr17_random 1077284 38 + 2618010 ATCCCCCCTGCACCCCCCAGGCGTGGAAAGCCAGGCCC- s panTro1.chrUn_random 236867509 38 - 240967748 ATCCCCCCTGCACCCCCCAGGCGTGGAAAGCCAGGCCC- s rn3.chr7 71130872 36 - 143082968 GCCCCCTGGGCACCCTCCAGGCTCACAGTCCACTGC--- s canFam1.chr24 2272981 39 - 50732077 GTGTCCTCTGCACCCCCAGGGCTAGGGAGGGTCAGCCTG a score=5180.0 s hg17.chr17_random 1077322 38 + 2618010 ATCCCCCCT--GCACCCCCCAGGCGT---GGAAAGCCAGGCCC s panTro1.chrUn_random 236867509 38 - 240967748 ATCCCCCCT--GCACCCCCCAGGCGT---GGAAAGCCAGGCCC s rn3.chr7 71130908 38 - 143082968 ATGCCCCCTGGGCACCCTCCAGGCTC---ACAGTCCACTGC-- s canFam1.chr24 2273020 41 - 50732077 GTGTCCTCT--GCACCCCCAGGGGGCTAGGGAGGGTCATCCTG a score=4536.0 s hg17.chr17_random 1077360 38 + 2618010 ATCCCCCCT--GCACCCCCCAGGCGTGGAAAGCCAGGCCC- s panTro1.chrUn_random 236867509 38 - 240967748 ATCCCCCCT--GCACCCCCCAGGCGTGGAAAGCCAGGCCC- s rn3.chr7 71130946 38 - 143082968 ATGCCCCCTGGGCACCCTCCAAGCTCACAGTCCACTGC--- s canFam1.chr24 2273061 38 - 50732077 GTGTCCCCT--GCA-CCTCAGGGCTAGGAAGAGTCAGCCCG a score=8209.0 s hg17.chr17_random 1077398 38 + 2618010 ATCCCCCCT--GCACCCCCCAGGCGTGGAAAGCCAGGCCC s panTro1.chrUn_random 236867509 38 - 240967748 ATCCCCCCT--GCACCCCCCAGGCGTGGAAAGCCAGGCCC s rn3.chr7 71130984 40 - 143082968 ATGCCCCCTGGGCACCCTCCAGGCTCACAGTGCACTGCAT s canFam1.chr24 2273099 38 - 50732077 GTGTCCTCT--GCACTCCCAGGGTAGGGAGGGTCATCCCC a score=5403.0 s hg17.chr17_random 1077436 38 + 2618010 ATCCCCCCTGCACCCCC--CAGGCGTGGAAAGCCAGGCCC- s panTro1.chrUn_random 236867509 38 - 240967748 ATCCCCCCTGCACCCCC--CAGGCGTGGAAAGCCAGGCCC- s rn3.chr7 71131024 38 - 143082968 GCCCCCTGGGCACCCTC--CAGGCTCACAGTCTACTGCCT- s canFam1.chr24 2273137 41 - 50732077 GTGTCCTCTGCACCCCCAGAGGGCTAGGGAGGGTCAGCCCG a score=5819.0 s hg17.chr17_random 1077474 38 + 2618010 ATCCCCCCTGCACCCCCCAGGCGT---GGAAAGCCAGGCCC s panTro1.chrUn_random 236867509 38 - 240967748 ATCCCCCCTGCACCCCCCAGGCGT---GGAAAGCCAGGCCC s rn3.chr7 71131062 36 - 143082968 GCCCCCTGGGTACCCTCCAGGCTC-----ACAGTCTACTGC s canFam1.chr24 2273178 41 - 50732077 GTGTCCCCTGTACCCCCAGGGGCCTAGGGAGGGTCAGCCTG a score=2777.0 s hg17.chr17_random 1077512 38 + 2618010 ATCCCCCCT--GCACCCCCCAGGCGTGGAAAGCCAGGCCC- s panTro1.chrUn_random 236867509 38 - 240967748 ATCCCCCCT--GCACCCCCCAGGCGTGGAAAGCCAGGCCC- s rn3.chr7 71131098 38 - 143082968 ATGCCCCCTGGGTACCCTCCAGGCTC--ACAGTCTACTGC- s canFam1.chr24 2273219 36 - 50732077 --GTGTCCT--CCACTGCCCTGACCT-GACCCTCAGCTCCT a score=9945.0 s hg17.chr17_random 1077550 84 + 2618010 ---------ATCCCCCCT--GCACCCCCCAGGCGTGGAAAGCCAGGCCCATCCCCCCTGCACCCCCCAGGCGTGGAAAGCCAGGCCTGTTCCC----CA s panTro1.chrUn_random 236867509 84 - 240967748 ---------ATCCCCCCT--GCACCCCCCAGGCGTGGAAAGCCAGGCCCATCCCTTTTGCACCCCCCAGGCATGGAAAGCCAGGCCCGTTCCC----CA s rn3.chr7 71131174 90 - 143082968 ---------ATGCCCCCTGGGCACCCTCCAGGCTCACAGTGCACTGCATGCCCCCTGGGCACCCTCCAGGCTCACAGTGCACTGCATGCCCCCTGGGCA s canFam1.chr24 2273255 73 - 50732077 GAGGTCTCTGTGTCACCT-GGCGCGGTCCAGACGGGC-------------TCCACTCCGCATCCCCT--------GAAGCCAGGCCGCTGCCA----CA a score=2180.0 s hg17.chr17_random 1077634 14 + 2618010 CCACCAGTGCTCAC s panTro1.chrUn_random 236867593 14 - 240967748 CCACCAGCGCTCAC s rn3.chr7 71131264 14 - 143082968 CCCTCCAAGCTCAC a score=27370.0 s hg17.chr17_random 1077648 293 + 2618010 TCAGGAACTGCACACATGAGGATACCCAGCTGCCAGCTGAATCCCTCAGACAGGCCACTCAGGGAGCATCTGCTTGTCTTCAGGGATCTGCAGAGTGAGCATCTGACCCCTCCCTCCAAGAAGGGCAAAGGGTTTCTCTCTGCATGTTGGGGTGATCGAGGAAGGTAAGCTCATCAAGGAGTGAGCAGACCCGCTGGGCCAGGATGTTTGGGGCCCTGGGTGGGTGGCATCTGGTCTTTGAGGGGGAGGCTGCACATGGCTTACCAGAGCTGAACCCTTGTCATCATGGCTGG s panTro1.chrUn_random 236867607 293 - 240967748 TCAGGAACTGCACACATGAGGATACCCAGCTGCCAGCTGAATCCCTCAGACAGGCCACTCAGGGAGCATCTGCTTGTCTTCAGGGATCTGCAGAGTGAGCATCTGACCCCTCCCTCCAAGAAGGGCAAAGGGTTTCTCTCTGCATGTTGGGGTGATCGAGGAAGGTAAGCTCATCAAGGAGTGAGCAGACCCGCTGGGCCAGGATGTTTGGGGCCCCGGGCGGGTGGCATCTGGTCTTTGATGGGGAGGCTGCACATGGCTTAGCAGAGCTGAACCCTTGTCATCGTGGCTGG a score=70320.0 s hg17.chr17_random 1077941 773 + 2618010 AGAGTCTCAATCAAACCCAGTGTCTCAGTGTGGCTCAGGGGAGTGAAGATGC----CCTAGTGGAGGTCACCATGACCTACAACCATC--AGACAAGACCAGGGGCCTCCCCAGGTTTCAGGGTT----------TGCAGAGCTTTTCCAACACACAAatgtctgtagctggaggccccacagacacctcgaactcaagagggcacaaaattgagcccatcgctgacccctccaatcggccccc----------tccaGTGACGTGAATGTCAGCCGTCGAGGACTCTTCCGGATCTCCTTCTCCCCGCCTCACACCAACCAACCCCAAGCCAGTCCCACCCCCCAAGTCCTGATTGAACGGGCT-----------------------------------GTTTCCCCCTGGCCCAGCT------CTGGCAAAGCCGC-------CTCTCACGGCGACCA--------GCTCATTCCTCTGTTCAGAGCTCTATGGTGG-----------------------------------------------------------------------TCCTGGGCTCGGGGAGG--------------------CCAGAC--------TTGTCGAGAACCCCTATTTTAATTGCCCCCAAATTTC-----------------CTCTCTAAATACCAGCTCTGGCCCCTCTG-CACATCACCCGTAAGT---CCCAGCCTC------------------ACAGAAACAAGAGGAGTCAAG--------GTTCTGGGTCCACGCAGTGTACTCACGGTGGCGGAGTGCGGGC--GAccgatgcccagggttttgaaaaatgt------------------------gctttgtgtgttttct----------------------------------ctgttgttgttctttcagaggggagtgtaaatctacttctgatccctgtctggggcaga---ggcTGTGGCTCTCGGGTGCATGAACTTCAGCTTGGCCGAGTCCTAGCCGCCAGGTGCTGCCATCCCTGCTGCCCT s panTro1.chrUn_random 236867900 774 - 240967748 AGAGTCTCAATCAAACCCAGTGTCTCCGTGTGGCTCAGGGGAGTGAAGATGCGTGCCCTAGTGGAGGTCACCATGACCTACAACCATC--AGACAAGACCAGGGGCCTCCCCAGGTTTCAGGGTT----------TGCAGAGCTTTTCCAACACACAAATGTCTGTAGCTGGAGGCCCCACAGACACCTCGAACTCAAGAGGGCACAAAATTGAGCCCATCACTGACCCCTCCAATCGGCCCCC----------TCCAGTGACGTGAATGTCAGCCGTCGAGGACTCTTCCCGATCTCCT---CCCCGCCTCACACCAACCAACCCCAAGCCAGTCCCACCCCCCAAGTCCTGACTGAACGGGCT-----------------------------------GCTTCCCCCTGGCCCAGCT------CTGGCAAAGCCGC-------CTCTCACGGCGACCA--------GCTCATTCCTCTGTTCAGAGCCGTGTGGTGG-----------------------------------------------------------------------TCCTGGGCTCGGGGAGG--------------------CCAGAC--------TTGTCAAGAACCCCTATTTTAATTGCCCCCAAATTTC-----------------CACTGTAAATACCAGCTCTGGCCCCTCTG-CACATCACCCGTAAGT---CCCAGCCTC------------------ACAGAAACAAGAGGAGTCAAG--------GTTCTGGGTCCACGCAGCGTACTCACGGTGGCGGAGTGCGGGC--CACCGATGCCCAAGGTTTTGAAAAATGT------------------------GCTTTGTGTGTTTTCT----------------------------------CTGTTGTTGTTCTTTCAGAGGGGAGTGTAAACCTACTTCTGATCCCTGTCTGGGGCAGA---GGCTGTGGCTCTCGGGTGCATGAACTTCAGCTTGGCCGAGTCCTAGCCGCCAGGTGCTGCCATCCCTGCTGCCCT s canFam1.chrUn 84695950 1015 - 91062872 AGCATCCTGACCAAGCCCCCAGTCTCGGGGCGACATGAGGGAAGTAGGA---------CAGTGGA---TAGGAGGACCCACAGCTGTCAGAGACAGCAGTGGGGGCCTCCCTGTGCTCTAGGGTTCCACTGGCCCCAGAGATCTCCCCCACAGCACAAATCTCTCCAGCTGGAGGCC---------CCTCCAGTTCATGATGACAC-AAATGGGATCCATCTCGGTCCCCCGGAAACTGCCCCTCCCACTGCCATCCAGTTACGTGAAGAAGCAACCTGGAGACCGCGGGCAGCCTCTCCTCTCTGCACCCCAGGTGGGTCAGCCCCCAGCCAGGCTCGCCCCAC---TCCCTCTAGAACGTGCTCCCCTCGCCGCGGCGCCCCGGGCCGAGCAGTGAGCGCATCCCCCCACTCCCACTCAGGGACAGGCCAAGCCGCCCACGTGCCTCCACAGAGCTCAGTCGCATGGCCCAGTGCCCTGTCTAGAGGACTCTGGCAGCATCCACACTCCAGAGGCGTCCCTCATCCTGACCCTGCCGTGAGCCCCAGGACAGGCACTCCCTTGCCCTCTCCTGTTCCCGTGGGGGCAGGGCCACCGTGCTCGGTTCCAGACCAAGGCGGTCAGTGCTGGCCTCTGCTGCGGATGCCCCTCGGTCTCACGCCCCAGGCCCAATGCCCTCTCCTCCCCAGAGTCGGCTGCTCTGACATGTTTGCTGCAAATATGCTCAGCTGCTGTGAACACACGTTTCCGACGGACAGAAGCGGTGCCATGCCCTCTGTGCTCTGCGTC--TTCAGCTTCTCCAAGAT-GCTGTGTGCCGCCCGCACGGATGCCCCAGCTGCTGCAACGTGCTCCATCCTGCGAACCTCGGCCTGGGCTTGCTGGACCCTCCTGCCTGGGCTGGGCAGCCACGGGGCTCACCTGCATTGTTGTCCCTCTTTCAGGAGAGGG-GTCAGTCCCGCCCTGCTCCTCACCCTGCAGAAACAGGGCTTTGGCTCCCAG-----------------TGGGTCACTCTGGGTCACCA-GTGCGG-CATCTCCACGGTGG- a score=52141.0 s hg17.chr17_random 1078714 417 + 2618010 CACTGCCTCCAGCAGGGTCACACCAGGCAGCGCACACCTGTCTGGCAGGTATGatggatctgtctgctgcttta-----aattcctctga------------------------------------------------------------aaattgcctattaatatcatctgtccattcatccaccggagttcctgtctttttctt--atgaattgg-gggaatttattgtatgttccta--attaatccctaattgggtttagaagtcgtgcatatctcatcccGACCTGTCTTG----GTTACTGTTGTGGCAA------------CATTTTTATATCATCCATGACTAAGGGGGCACCACTG--AAatgaagtgggtgccaccgctgagctccccgtgcagaggaagaaactaaggctcagagatgctgag---------------cgcttg-------ctgcaggtcc----cctggccagtcggggaag---------------------------------------gaggtg------gga-------------ttcacaccag-------------gccctgtgctc----------------------------------tgactt s panTro1.chrUn_random 236868674 417 - 240967748 CACTGCCTCCAGCAGGATCACACCAGGCAGCGCACACCTGTCTGGCAGGTATGATGGATCTGTCTGCTGCTTTA-----AATTCCGCTGA------------------------------------------------------------AAATTGCCTATTAATATCATCTGTCCAATCATCCACCGGAGTTCCTGTCTTTTTCTT--ATGAATTGG-GGGAATTTATTGTATGTTCCTA--ATTAATCCCTAATTGGGTTTAGAAGTCGCGCATATCTCATCCCGACCTGTCTTG----GTTACTTTTGTGGCAA------------CATTTTTATATCATCCATGACTAAGGGGGCACCACCG--AAatgaagtgggtgccaccgctgagccccccgtgcagaggaagaaactaaggctcagagatgctgag---------------cgcttg-------ctgcaggtcc----cctggccagtcggggaag---------------------------------------gaggtg------gga-------------ttcacaccag-------------gtcctgtgctc----------------------------------tgactt s rn3.chrUn 5825479 437 + 75822765 CGCTGTCTCTAGCAGGTTCCCACCAGACATCATAGCTTCTTCTGGCAGGAACACTGG-TCTTACTGCTATTTTAACTTGAATTTCACTGATAA---------------------------------CCCCACAGATAAGGAACCACATGCACACTGCCTGTTTGTCTCAGTTATACATCTTTCCCTTGAAGTTGCTTTTTTTGTTTTAAATAAATAGA-AGAAATGACTTGTATATCCTAAACATTAA--ATTGATAAGGTTTAGAAGTCAGAAATATCCTG-CCATACTTGCCACGTACAATTAAAGTTGTGAAAAAGGCTTCCATACCATTTTCTTAGTCACAGTGAAT-----------------AAACAAAGTAAATACCTTCGCTAAGCCCAATTTTCAGAAAAATAAACTTGTGTTCAGAGACACTGC------------------------------------TTC----CCTGGACAGTCTCGGACA---------------------------------------GAGGTG-----AGAA-------------TTGAAGTCAG-------------GCCACACACTC----------------------------------TGACTT s canFam1.chrUn 84696965 588 - 91062872 CACAGCCTCC----------CCATGGGCCTCACACATCCGACCTgtgggtgcaaagcatctccctgtcgctctaggttgggtccctctgataaccgccgtgtctgaggatcattcgtggcctttggcccttctgt---------------aaatcgcctattcatatgatgtgcccattt-tctgtt--agtt--tgtctttttctt--ctaggttggaagGAAGCTCTTGTGCATTCACTGTATCAGTCTCTGGCTAGTGTTAGGAGCTGTAGACACCTTGTCCTGATCTGTCCTGCTCAGTTAATTTTGTGGCAA------------CACTTCCACAGtcacc----ctattgggtccccatgagccaataaagtgggcaccacccctaagtccactttgcaaatgaagaaactgagtatcgcagaggccgggtaCGCCCGTCAGGCCCGCTGGTACGCCCCTGCAGGTCCCCGTCCTGGCTTGTCTCCGGGGGGCTTGATGACCTGTCTGTCTCCCAGATGGTGACTTTGTGAGGTGTCTGTAGGAGATGTCACTGTTTTTTGAATCAGTGGCGCAATGAGAGCCTCGTGTTCACTGAAATGCCAACAGTGCAACTGTTCAGTGCAACTACTT a score=89896.0 s hg17.chr17_random 1079131 720 + 2618010 ----------tgcc---------------agtccctgctctacaag-ctcaatgccaACACCCAACGGTGAGTCCCGTGAACCCCAGGTGGCCTTCA---------------CCCCAGC-TCTGTGAGGTGCC-----------------------------------CAGAGGGA---------------------------ATAATCGATGGTTGTTGAATCCAAGT-TTTTGCATTGTGGAAGAGGTT-----------TTGTTTTCACTGAAATACCC----AAAAGGTCAAATGCGGCAA------------------------AATCACTTAAAACTGGTCTCTTCCACGAG-----------------TAGCTCTTGCGGGAGAAAGGGAAGCTTCTGGATAAACTCAAGCCGCAGGGACTCCTGAGCCAGCTGGAAAGGCAGGCTGTGAG-GAGGACGTGGGGCCTGTGCAACCTGCATCCGTGCGTCAGGGCCTCACAGCCAAAACCAGCTTCTGTGTCCTGTTTTCTCCAAAGGTTGGCTCTTGAAAGCAGGGTCACCTCCTGAAAAGCCAGTGTTTTCCACCATGCCAACAAAATGAAATAAAGAGTCTGGCACTGGGGCGGG---------------AGTCACAGGCCACCAGCC----GGGGGGGCTGAGGATGTGGCCCGTGTGTTGTCAGGGAAGGCAGGCGCCAAGC---ACCTGGCACCAGTAGCGCCTTTGTTGGGCGCCTGGGAGATTGTTGTTTAAAACGTTTAAAATAATAATAAAAAGCGAAAGTCCTTCCAAGAGGGAGGAGAAGAAAGCTGCGCCAAGAGGAAGGTGGGAGAACATCAAGCTCATCCATCCTTATCCGTGTAAATAAAAAGAAATGTGAA s panTro1.chrUn_random 236869091 721 - 240967748 ----------tgcc---------------agtccctgctctACAAGACTCAATGCCAACACCCAATGGTGAGTCCCGTGAACCCCAGGTGGCCTTCA---------------CCCCAGC-TCTGTGAGGCGCC-----------------------------------CAGAGGGG---------------------------ATAATCGATGGTTGTTGAATCCAGGT-TTTTGCATTGTGGAAGAGGTT-----------TTGTTTTCACTGAAATACCC----GAAAGGTCAAATGCGGCAA------------------------AATCACTTAAAACTGGTCTCTTCCACAAG-----------------TAGCTCTTGCGGGAGAAAGGGAAGCTTCTGGATAAACTCAAGCCGCAGGGACTCCTGAGCCAGCTGGAAAGGCAGGCTGTGAG-GAGGACGTGGGGCCTGTGCAACCTGCATCCGTGCATCAGGGCCTCACAGCCAAAACCAGCTTCTGTGTCCTGTTTTCTCCAAAGGTTGGCTCTTGAAAGCAGGGTCACCTCCTGAAAAGCCAGTGTTTTCCACCATGCCAACAAAATGAAATAAAGAGTCTGGCACTGGGGCGGG---------------AGTCACAGGCCACCAGCC----GGGGGGGCTGAGGATGTGGCCCGTGTGTTGTCAGGGAAGGCGGGCGCCAAGC---ACCTGGCACCAGTAGCGCCTTTGTTGGGCGCCTGGGAGATTGTTGTTTAAAACGTTTAAAATAATAATAAAAAGCGAAAGTCCTTCCAAGAGGGAGGAGAAGAAAGCTGCGCCAAGAGGAAGGTGGGAGAACATCAAGCTCATCCATCCTTATCCGTGTAAATAAAAAGAAATGTGAA s canFam1.chrUn 84697553 850 - 91062872 TAAAAGGCTCTACCTAATGTTTTACTTTTAATCTGGGCACTGCAGC-CTCAGTG-----ACCTGTCAGAGCAGTCTGAGGCCACCCTGTGGCCTGCACCAGGGTCCGTGCTCCCCCAACTTCCCTGGGGAACCTGCACAGATCCCGAGGCCAAGGAGCCCTCCCCGGGCAGAAAGACAGGGCGTCCCTGGCTGACCTCCAGCCATGTACGCAGGGTGTTGGAGCAAGCCGCTCTGCATCGGAGCATCGCTTCCATGCGTCCCTTGCCCTCGGTGCA--GCCCAGGGGAGAAGCCATGCCCGGCAGCGACCTACAGTGTGTGCGGGGAGCAGTCAGCTCAGACTCAGCACTTTCGCCAGCAGGGGCCAGCTGGGCATGGCTGTCATGGGAGAAGAGAA---CCCTGGGTGAACTTGAGCCTGTGGGGCGCCTGAG-CAGATGGAGCTGCAGGCCGCAAGTGAGGAC------------------ACAGCCCTG--TCTGGGCCTCAAAGCCAAAACCAGCTTTCCCGTCCTGTTTTCTGCAAAGGCTGGCTCTTGAAAGTAGGGTCACCTCCCGGAAAGCAAATGTTTTCCACGATGCTGACAAAATGAAATAATGAGTCTGGCACCTGGGCCTGTGCTGTCCCTGGCCTGGTTGCTGGCCGCCGGATCAGGGGGGGGCCTGGGGA----GCCGGGGC--------GGAGCACAGGC-CCAAGAGCGGCCCGGCACCGGCA--GCCGGGCTAACGCACTTGTCAGACTGTTGTTAAAGATGTTT-AAATAGTAATGATAACAGAGGGT-CTTCCAAGAAAGCAAAGAAGGGAGCGGTACTGAGAGGAATCTGGAGAAAC-TCCACCGCGTCCAGCCTTAGCC----AGAGGGAAGGAAACAAGAA a score=127505.0 s hg17.chr17_random 1079851 1387 + 2618010 GTGGTCTTTAAGCGACAGAGGAAACTGAGAATAAAAGCACTTCAGAGCTGCCTCACTGTTAGCCTTTCTCCCAGTAAAGCACCTTTCACAGAAAACAAACGGTTTGTCATCAGCTCAGGGAACAGACGGACTGGGCCGCAGCGGCCTCCTCGCAGCTCCCTCGCCTGAGGCCCTCGCAGCTCCCCTGCAGCCAGCACTGAGCCTGCGTCCCTTGAGGGCTGCCACTCTCGCTCCGTGGCCTTCTCTCTCCAGCCCTCAGCCAGGAGAGGCGGCACAGGGAGAGGAGGCAGAAGCCGGAGTTCCTGGCTCTGTCCTTGCTGTCTTTGGCTGCACACAGGTTGCTGATGGTCCTAACACACTTGCCCAACCTGCTCCGTGGAACCCTGAGGCCTGGGGGCCCCCCGGCTGTGACTGCTGTGGGGGGTGACCCGCCACGGGCATCCGTCCTGAGCCCCATGCTGCCCGGCCAGGATCTCCTGCACGGGCTCCGTTTCCCTGAGGCAGGAGCCCTCCTCTCCTCCCTGTTGGCCTCTCCTCACTCCTGGGCCTGGGCACGGAACACAGATTCTGGATCGTCACAGAGAGAAACCGATCTGGAAAGCACCAACTCAAATAGAATCACAGCAGCACGGATGCAGtgtgccaggcgccgttttaaaccctttgaatgtatccactcatgtcatccccaccaaagctctgtgaggcaCGGCCAGGTTCAGGGGCTGGCCCAAGGCCTGCAACCCCAGTCAGTCCCCGGGATCTGTGGCCGGAGTCGCAAAGCTGCAGCGTGTCTGGGCCCAGGTGTGGCCAGTCCTGCCACATAGGCCTGTGGGTTGGCTCCGAGTTTGTCCTCAAGTGGGTAATAAATAGCACCGTGGCCTGAAGGTCCCGAGAGGCACATCTGGGGCAGGGGGCGAGGGACACAAGGACACCTCTTGGTCAGGTGGCCCAGGGGCACTCAGCACTTGCTCCTCCCTTGTGGCCGGCAGCAGGTGCAGATTTGACC-ATATGCTCCTCACAGCAGCGTCAGGTGCTGGCCAGGCCAGGGGGGCCGGGACCCGGGGGCCCAGGTCCATGGGGATGAGCCATCTCTGCCTGGTGAGGCTCCCCCAGTGATTCAGGGCCATGCTTTCGGAGGGGCCAGAGGACAGCCCGGTGCTCTGAGCAGCTGCCGCCGAGACA-GGACTAACCTCTCGAGGATTTCATCAGGGAGATGCCTGTTAGTGGAATGAGCAGGAGCCGGGCCGGCAGGAAGGACAGAGCTGAGGGCCTCCCCTGGACTCCTAGGTCTTGGCCTTGCGATCAGTCTTGGCTCTGTCCCCACAGAGGAGCTGAGGCTAAAAGGCTGCCAGCTGCCCCAAAAGTGCACCCCGGCACACAAGCG s panTro1.chrUn_random 236869812 1388 - 240967748 GTGGTCTTTAAGCAACAGAGGAAACTGAGAATAAAAGCACTTCAGAGCTGCCTCACTGTTAGCCTTTCTCCCAGTAAAGCACCTTTCACAGAAAACAAACGGTTTGTCATCAGCTCAGGGAACAGACGGACTGGGCCGCAGGGGCCTCCTCGCAGCTCCCTCGCCTGAGGCCCTTGCAGCTCCCCTGCAGCCAGCACTGAGCCTGCGTCCCTTGAGGGCTGCCACTCTCGCTCCGTGGCCTTCTCTCTCCAGCCCTCAGCCAGGAGAGGCGGCACAGGGAGAGGAGGCAGAAGCCGGAGTTCCTGGCTCTGTCCTTGCTGTCTTTGGCTGCACACAGGTTGCTGATGGTCCTAACACACTTGCCCAACCTGCTCCGTGGAACCCTGAGGCCTGGGGGCCCCCCGGCTGCGACTGCTGTGGGGGGTGACCCGCCACGGGCATCCGTCCTGAGCCCCATGCTGCCCGGCCAGGACCTCCTGCACGGGCTCCGTTTCCCTGAGGCAGGAGCCCTCCTCTCCTCCCTGTTGGCCTCTCCTCATTCCTGGGCCTGGGCACGGAACACAGATCCTGGATCGTCACAGAGAGAAA-CGATCTGGAAAGCACCAACTCAAATAGAATCACAGAAACACGGATGAAatgtgccaggcgctgttttaaaccctttgaatgtatccactcacgtcatccccaccaaagctctgtgaggcaCGGCCAGGTTCAGGGGCTGGCCCAAGGCCTGCAACCCCAGTCAGTCCCCGGGATCTGTGGCCGGAGTCACAGAGCTGCAGCGTGTCTGGGCCCAGGTGTGGCCAGTCCTGCCACATAGGCCTGTGGGTTGGCTCTGAGTTTGTCCTCAAGTGGGTAATAAATAGCACCGTGGCCTGAAGGTCCCGAGAGGCACGTCTGGGGCAGGGGGCGAGGGACACAAGGACACCTCTTGGTCAGGTGGCCCAGGGGCACTCAGCACTTGTTCCTCCCTTGTGGCCAGCAGCAGGTGCAGATTTGACCAATATGCTCCTCACAGCAGTGTCAGGTGCTGGCCAGGCCGGGTGGGCCGGGACCCGGGGGCCCAGGTCCATGGGGATGAGCCACCTCTGCCTGGTGAGGCTCCCCAAGTGCTTCAGGGCCATGCTTCCGGAGGGGCCAGAGGATAGCCCGGTGCTCTGAGCAGCTGCCGCCGAGACAGGGACTAACCTCTCGAGGATTTCATCAGGGAGATGCCTGTTAGCGGGATGAGCAGGAGCCGCGCCGGCAGGAAGGACAGGGCCGAGGACCTCCCCTGGACTCCTAGGTCTTGGCCTTGCGATCAGTCTTGGCTCTGTCCCCACAGAGAAGCTGAGGCTAAAAGGCTGCCAGCTGCCCCAAAAGTGCACCCCGGCACACAAGCA a score=70537.0 s hg17.chr17_random 1081238 721 + 2618010 GCAAGGAGGGTTGAAGCCAGAGACCTGCAGAGAAAGTGTCCCTGGGCGGCACAGCCCCTCTGTGGAGCCGTGGGCTGCAGGT-TACACAGCCCGGCTCTT-------------GTGTGTGCCACGTACCCCAGAGACGGCT-TGAAACTGGCTGTGCCACCAGCTTGAAGCCACTCGCTGGCTTATGGGGCCTCACCCAGGCCTTGCCCCAGG------AGGAAGAGGTGGGAGAACGGAAGG----------tgccttagctagggcttctctag------caaaacacca--agacgatttaataacaa----cacacatttatttctcacagttctggagtttggaagctgcagacggt--accagctgagttgggttctggtgagggccctcttcctggcttgcagacagccaccttctcactgtgccat------gtggaggaagagaggggcatcccttaggcctcttctgtaagggcagtaaccccgttcatgagcctccgccctcatgaccccatcacctcctaaaggctgcacccccaaatgccatcaccttgagggttgatttcaacacatgaatttggggggacacaggcattcagtccattgcTTTCCCAGAAAACAAGCTGCAGGGGGACCT-GCTGGGCGCCAGGTGGTCC----TCGACACCAGCCC----GGCTCCAGCAGGCTCTGCAGGCTGCGGAACAGA--------AGCCCACGTCCC---------------------------------------AGGCTCCCCTGTA-----GGCAGGTA---------GCGTTGGGCCTCCCTGCTCCGTGTCCACT s panTro1.chrUn_random 236871200 721 - 240967748 GCAAGGAGGGTTGAAGCCACAGACCTGCAGAGAAAGTGTCCCCGGGCGGCACAGCCCCTCTGTGGAGCCGTGGGCTGCAGGT-TACACAGCCCGGCTCTT-------------GTGTGTGCCACGTACCCCAGAGACGGCT-TGAAACTGGCTGTGCCACCAGCTTGAAACCACTCGCTGGCTTATGGGGCCTCACCCAGGCCTTGCCCCAGG------AGGAAGAGGTGGGAGAACGGAAGG----------tgccttagctagggcttctctag------caaaacacca--agacgatttaataacaa----cacacatttatttctcacagttctggagtttggaagctgcagacggt--accagctgagttgggttctggtgaggaccctcttcctggcttgcagacagccaccttctcactgtgtcat------gtggaggaagagaggggcatcccttaggcctcttctgtaagggcactaaccccgttcatgagcctccgccctcatgaccccatcacctcataaaggctgcacccccaaatgccatcacctggagggttgatttcaacgcatgaatttggggggacacaagcattcagtccattgcTTTCCCAGAAAACAAGCCGCAGGGGGGCCT-GGTGGGGGCCAGGTGGTCC----TCGACACCAGGAC----AGCTCCAGCAGGCTCTGCAGGCTGCGGAACAGA--------AGCCCATGTCCC---------------------------------------AGGATCCCCTGTA-----GGCAGGTA---------GCGTTGGGCCTCCCTGCTCCATGTCCACT s rn3.chrUn 5827326 754 + 75822765 GCAAGGAGGGTGTGGACTGGAGCCACTCAAAGAACAT----TGGTACGGCACTACTCAACTCCAATAAGGTGGAGTGTGGGTATGCGCCACATGGCAGTTTTCAAGGGTCCAGATCTGCCTCAAGCATCCCAGATGCAGCTCTAAAACCGGCTGTGCCAGGAACTC----CCACTT--------------CTGTACGCAAACCTTGCCCTGGACATGTCAGAAAGGGCCAGGGCAAAGGATGGAGAAGACTCCTGTCTTATCAGACTCACGTCCAGTCATAACAAAATATTATCAGCTGAACCATTGACAAATGCTAATAATTTATTTATCA-AGCTCTGCAAGGTGTATGTCTGGGGCTATGAACCAATGCGTGTGGGTTCTGGAGTGAGCCGCCTTTTTAGCTTATAGG-AGGTGCCATTTCACAGTATCCTAATTTGGTCAAGGAAGCAAGGGAATTCTCTGGAGCCTCTTC-ACAAGGACACTAATTCCACTCAT-----TGAGCCCCTACTACCTTACTATC----AAAAGCT-------------------CTGTGA--------TTCAACATATGAATTT---------------------------CCAACCTAGAGAACAAGTCGGAGGCAGGCTTAGTTGAAGACTAGAGGATGCTAATTCTACCCAAGCCCTGAAAACTTCAAGGAATTTCATACACTACAGGACTAACTGAGCTTGGCCTACAGCCAGGAGAGTTGATCATGGCTTTTCACATATGGAGTAGGATGGGGTTCCTTTGCACTGCTGAGAGGTATGCTTTGCTGCTGTGAGCATGCCTTGTAAACGGCAGCT a score=7520.0 s hg17.chr17_random 1081959 30 + 2618010 -------------GTCCATGCCTGCAGCCAATTCCTAATGCCC s panTro1.chrUn_random 236871921 30 - 240967748 -------------GTCCATGCCTGCAGCCAATTCCTAATGCCC s mm5.chr11 191916 30 - 121648857 -------------GTCTGCTTCTGTGGTTAATTTCTGATGTCC s rn3.chrUn 5828080 42 + 75822765 GTCGAGGACAAGCATCTGCTTC-ACAGTTAATTTCTGATGTCC a score=41332.0 s hg17.chr17_random 1081989 201 + 2618010 GGGGCTCAGCTGAGGCACATCTTCCTGAGTCAGTACCCCCAGAGCTGGCTTCC---AATGCCCCACCCGTGTAGGCCAATTCTGCATTGTCTCTGGGAGGGGTCTTTACCACTTCCCTCCTGCATCCAAGCCCACCTCACCTGGGAGGGGCCTGCTCCTGTGCGGGACATTGATGGATGCAAAAAAAGAAAATGGTTTTGGGGG s panTro1.chrUn_random 236871951 201 - 240967748 AGGGCTCAGCTGAGGCACATCTTCCTGAGTCAGTACCCCCAGAGCTGGCTTCC---AATGCCCCACCCGTGTAGGCCAATTCTGCATTGTCTCTGGGAGGGGTCTTTACCACTTTCCTCCTGCATCCAAGCCCACCTCACCTGGGAGGGGCCTGCTCCTGTGCGGGACATTGATGGATGCAAAAAAAGAAAATGGTTTTGGGGG s mm5.chr11 191946 186 - 121648857 AAGTGCCCCATGAAACCCATTTTCCTGAAGCGACACTCCTATAGCTGGCTTTC---AGAGCCTCGCCTGGCTCTGATAGTCTTACAATGTCTCTGACATAGATC-TTGCTGCTTCCTTTCCGCAT-CATAAACATCACATCTAGACAGGCCCTGC-CCTGCATGGTACAT------------AGAAAGAAAATGGTTTTCTGGG s rn3.chrUn 5828122 171 + 75822765 AAGTCCCCCGTGAAAACCATATTCCTAA--------------AGCTGGCTT-C---AGAGCCCAAGCCATCTCTGCCAATCTTACAGTGTCTCTGATATAGATC-TTGCTGCTTCCTTCCTGCAT-CATAAACATCACATCTAGAAAGGGCCTGC-CCTCCATGGTACAT------------AGAAAGAAATTGGTTTTCTGGG s canFam1.chrUn 84699638 160 - 91062872 GAGGCCCACCTGGAGCG-GCCCACCTGGAGAGGCCCCCCTGGAGCAGCCCACCTGGAGAGGCCCACCTGGAGAGGCC------------CCCCCTGGAGAGGCC------------CCCCTGGAG-------TGGCCCACCT------GGCCAGCTCCCACCGCAGACACCGAGGC------ACACAGAGCAGCTTCCTCGGGG a score=29564.0 s hg17.chr17_random 1082190 336 + 2618010 TCTGAGGGGCTGAGGAAGCCCACCAAGCTGCTGGACA-CGGCACCCGAGCACCT------------GCT------GGGCGATGTCGGAATTCTCTCT-----ACACAACATGGA------CCTGACATCACCCTCTCTGCAGCTCCTGCAGCCAAAGCACAGACATGCACACCAGCCTGCTTGTGCCAGGGAACCTCGTCGGCATGGGGAGGCTGCACCCTGGAGGGGCAGGCTGGGGAAAGGGCATGGAAGGTGGGCAGAGATCGGGCCTGAAGACC--CCGTTTTCCCAGACATCCCAATCTCCAGTGTCCTTGGAT-GTCCCCACCTCTCAGAAACTTGATTTCTGAAGATGAACTCACAGAACTC s panTro1.chrUn_random 236872152 336 - 240967748 TCTGAGGGGCTGAGGAAGCCCACCAAGCTGCTGTACA-TGGCACCCGAGCACCT------------GCT------GGGCGATGTCGGAATTCTCTAT-----ACACAACATGGA------CCCGACATCACCCTCTCTGCAGCTCCTGCAGCCAAAGCACAGACATGCACACCAGCCTGCTTGTGCCAGGGAACCCCGTCGGCATGGGGAGGCTGCGCCCTGGAGGGGCAGGCTGGGGAAAGGGCATGGAAGGTGGGCAGAGGTCGTGCCTGAAGACC--CCGTTTTCCCGGCCATCCCAATCTCCAGGGTCCTTGGGT-GTCCCCACCTCTCAGAAACTTGATTTCTGAAGATGAACTCACAGAGCTC s rn3.chrUn 5828293 336 + 75822765 GCTCAGGGGCTGAGGAGCACCCCAACACTGCTGGACAGAAGCACCTGAGAACCTAGCATAGAAACAGCTCCCTAAGGGCACCACAGGAGTTCCCATTAAAACACAAAACAAGAGGTTATCTCTAACACAGTCTCTTATCCTGTGCTGATAGCCAGAACATACCC---CACAGTAGCT-----------GGGAACCCTAT-AACATAAGGAGGCTGTTCTTTGA-----------GAGCAAGAGGTATAAAATGCAGGCCTTGTTAATACCTGAAAACCCACCAACTT----GACCTCCCAGACTTCAGGAGAATC-TAT-GTCCCCATCGCTCAG-GATTCGGGTTCTGGAGGTGAGCACACACAGCTG s canFam1.chrUn 84699798 203 - 91062872 CCAGTGGGCCTGAGCAGGCCAGTCC--CCTCTGGACG-CA-CACCCGAGCACCT------------GCC------GAGG-----------------------AC----------------GCAGACATCACC-----TGGAGCTCCTGCTGC------------------------------------GGGG---------------------------CCGAAGGGGGAGGCTGG----------TTGAGGATGGACCCACTTC-----------CC--TCACTTT-------GCTCCAGGCTCCTGGGACCCTGGACAGGCCCCTGCCCTCAGGA-----GGCTCTGAAGCTGAGCTCAC--AGCTG a score=12620.0 s hg17.chr17_random 1082526 88 + 2618010 TTTTGGGCTGAAAGAAACAATGCTAGAAAACGCGTTTGTAAAATCTGCCCTGCCTGTTGCTTATGGCAGAAGGGGTAACCCTTCTTCA s panTro1.chrUn_random 236872488 88 - 240967748 TTTTGGGCTGAAAGAAACAACGCTAGAAAATGCGTTTGTAAAATCTGCCCTGCCTGTTGCTTATGGCAGAAGGGGTACCCCTTCTTCA s canFam1.chrUn 84700001 83 - 91062872 TTCGCGGCTGGAAGAGACAATGCTGGGACATCATCCTGCAAG---TCCGTTGGCTGCTGTTTGCTGCCGAAGGGG--ACCCCTCCTCA a score=0.0 s hg17.chr17_random 1082614 15 + 2618010 TGTCCCATTCAGGAG a score=955.0 s hg17.chr17_random 1082614 10 + 2618010 TGTCCCATTC s panTro1.chrUn_random 236872576 10 - 240967748 TGTCCCATTC a score=1446.0 s hg17.chr17_random 1082624 5 + 2618010 AGGAG s panTro1.chrUn_random 236872586 5 - 240967748 AGGAG s mm5.chr11 195533 5 - 121648857 AGGAG a score=-57.0 s hg17.chr17_random 1082629 8 + 2618010 CCCCACCC s panTro1.chrUn_random 236872591 8 - 240967748 CCCCACCC s mm5.chr11 195538 7 - 121648857 ACTC-CAT s canFam1.chrUn 84700084 8 - 91062872 CCCTGTCT a score=17842.0 s hg17.chr17_random 1082637 75 + 2618010 TGGTGCCCCGG-----CCTCCGCTGCTGCTGTTGGTAACCGTGCACAGACCTAAATGGGCTCGGGAAACCTGTCCCCATT s panTro1.chrUn_random 236872599 75 - 240967748 TGGTGCCCCAG-----CCTCCGCTGCTGCTGTTGGTAACCGTGCACAGACCTAAAtgggctcgggaaacctgtccccatt s mm5.chr11 195545 62 - 121648857 TGATGTGCCAG-----CCATCTCTGTAGAT-----TAGCTGCATGCAAACCTAAAAGGTCTTGGAAGG--------AATT s rn3.chrUn 5834013 69 + 75822765 TAATGTGCTGG-----CCATCTCTGTAGAT-----TAGCTGCGTACAAACCTAAAAGACCTTGGAAGG-CTGTTCCAGTT s canFam1.chrUn 84700092 66 - 91062872 --TTACCCCGGGCAGTCCTGCTCTGT---------CAGCCACGCACACAC---AGCATGCTGGGAAAACCTGTCCCACTT a score=62912.0 s hg17.chr17_random 1082712 519 + 2618010 CATCTCACACATTTCTGACTTGGACCAAACCCAAATTTCATTTGGT-CAACGCCCTTCTCACCTCCTCCAGCCCC----------------GTGTCAAGAAATGAAGCCTGACTGTTTCTGAATCATTTGCGCTTAAATCCCCCAAAAGAAGAGCGCTAAGTG-GTTTCATCCCCAGAGAGACCTTGCCCAGCCTTTTCTCTGAGTGACAGGACATTCCCATCTGCTAAGATATATTAAACCCCAGCTTCTAGAAAGGCTGGAGTAGGATCTGAGGTGTTCCAAAGGCCTGAGCTTCCAA--CAT--GGTCTGAGCATCCGGAATCTATGGTGCTCCCTCAAGGGGAGGCTGGGTGAGCTTGGACAGGGCCACACACTAGGCCCCAGGGGAAAACCGCTCCCCCCCATGGTAGAGAGCTATGTGAAACCCTCCCTCTATCTCTCGGTGGTCAAGTGTATGTGAACTTGTCCTCTTCCAAAACTTCATTTGTCAATT-CATAAACATGC-----CCTGAACTGAGACACAAACATGCCCTGAGCTTGG s panTro1.chrUn_random 236872674 518 - 240967748 catttcacacatttctgacttggaccaaacccaaatttcatttggt-caacgcccttctcacctcctccaggccc----------------acgtcaagaaatgaagcctgagtgtttctgaatcatttgcgcttaaatcacccaaaagaagagcgctaagcg-gtttcatccccagagaggccttgcccagccttttCTCTGAGTGACGGGACATTCCCATCTGCTAAGATATATTAAACCCCAGCTTCTAGGAAGGCTAGAGTAGGATCTGAGGTGTTCCAAAGGCCTGAGCTTCCAA--CAT--GGTCTGAGCATCCGGAATCTATGGTGCTCCCTCAAGGGGAGGCTGGGTGAGCTTGGACAGGGCCACACACTAGGCCCCAGGGGAAAACCGCT-CCCCCCATGGTAGAGGGCTGAATCAAACCTTCCCTCTATCTCTTGGTGCTCAAGTGTATGTGAACTTGTCCTCTTCTGAAACTTCATTTGTCAATT-CATAAACATGC-----CCTGAACTGAGACACAAACATGCCCTGAGCTTGG s mm5.chr11 195607 442 - 121648857 TAGCTCACCTATTCCTGACTCCAGTCAAATTCAGATTGTGTGTGCTGAAATGTCCTGTTTACCTCTT---------------------------TAAAAACACAAAACTCACATGACTCTGAGTCATTT-CCCATGACTCCCCT---AGAGCTGCCATTGGTGAGTTTCCTCACCAATGTAGCTTAGCTC------CTCTCTAAACCATAGAA-GTTTCTTTTTG-TGCCATGCACAGAACCTCAGGCTTGAGA---GTTCAAGTAGGGTCAGAAGCATACT-AGGTCCCAAGTTTCTGC-TCAT-CGATGTGGGCATCAAGAACCCATGAAAGTTGCT---GGACCAGCACAGTGATTGGGATCAGGGCTCCACGCTGGCTCACAGGG--AAGCTGCTCCTTCACTGAGCACAG---TAATCACAGGGTTACCTCTGCTGCTAGGCA--CAAG-----GTGAA-TTGTCTCCCTCCTAGACTCCACTAATCA------------------------------------------CACTGAGCAT-- s rn3.chrUn 5834082 428 + 75822765 TAGCTTACTGATTCCTGACTCCTTTCAAGTCCAGGTTGTGTGTGCCGAAATGCCCTCTTTACCTCTT---------------------------TGAAAACACAAAAC---------TCTGAGTCATCA-CCCATGA--CCTCT---AGAGCTGCCATC--TG-GTTTCCTCACCAATCTAGCTTAGCCC------CTCTCTGAACCATAGAA-GTTCCTGTTTG-TGCCATGCACTGAACCGCAGGCTTGAGAA--GTTCAAGTAGGGTCAGAAGTATAGT-AGGTCCTAAGTTTACTG-TCAT-GCATGTGGGCATCAAGAACCCATGAAATTTGCT---GGACCAGCATAGTGACTGGGATAAGGGCCCCACA-TGGCTCACGGGG--AAGCTGCTCCTTCATTGAACATAG---TAATCACAGGGTTACCTCTTCTGCCAGGCA--CAAG-----GTGAA-TGGTCTCCCTTCCAGACTCCATTAATCA------------------------------------------CACTGAGCAT-- s canFam1.chrUn 84700312 474 - 91062872 cATCACTCACATTTTTGACTTGGGCCAAATCCAAATTTC-TTTAAC-CAAAACCCTCCTCACCTTCTCCAGCCCCCGTGTCAACCCACGTGCTTCCAAGAGACGAAACCCACACGTTTCTGAATCA----TGCCTGAGTCAGCC-GGGGAGGAGCACC---TG---------CCCAA-------------------CCCCCCGAA--ACGGGAAGTTGTCAGTGGCCAGGAGACACCCAGC--CAGCTTCTGCGGGAGCTCCGGGCGGAGTCGAGATGATGA-AGGCCCACAGCTTGAAAGTCAAGGGGCCTGGGTGTGCAGAACCCATGG-GCTCAGTCGGGGGCCG--TGGGCAGCCTGGGGCGGGGCC---CGCTGGGCATCCAGG--AGGGTCCT------------GACAAGCCCTCCCTGTGCCTGCCTGTGCCTCCACGTG----AG-----GTGCT-CTGGCCTGTGTCCAGGCGGCATCCGCTGATTCCCCAGACACGCGCGGGCCGAAGCGGAGGCAGCGGCGCGGCCAGAGCTGGG a score=52269.0 s hg17.chr17_random 1083231 342 + 2618010 GCGGCGCCGGAGACACTCAGCACTCGGGAGGTTACGATCTCTGAC-CTGAGTGCTGGCTC---TCACGGAGGGTCAGGCATCACAGTGGGCACTGAGACTGGACAGCCACAAGGAATTCTGGGCAAACAAGAGCCCCC--CAGCTAACCCCTCTGGACTCCAGGCAAGCAGGATGACATCACAGCTGAAACCCAAGACCCAGAGGGGAGAGAGCTGGGGTGGGGGCAGGA-CCAGCGGTCTCAGACCCAGGGAGGACTGTGTGCAGCTCAGCACGCTCCAAACATGGGGATGGGGGACAAGGGGTCCCCTCCTGTCTGAGATGGGCTACCTGAGGGTGACTGTGAGGAA s panTro1.chrUn_random 236873192 344 - 240967748 GCGGCGCCGGGGACACTCAGCACTCGGGAGGTTACGATCTCTGAC-CCGAGTGCTGGCTC---TCACGGAGGGTCAGGCATCACAGTGGGCACTGAGACTAGACAGCCACAAGGAATTCTGGGCAAACAAGAGCCCCCCGCAGCTAACCCCTCTGGACTCCAGGCAAGCAGGATGACATCACAGCTGAAACCCAAGACCCAGAGGGGAGAGAGCTGGGGTGGGGGCAGGA-CCAGCGGTCTCAGACCCAGGGAGGACTCTGTGCAGCTCAGCACACTCCGAACATGGGGATGGGGGACAAGGGGTCCCCTCCTGTCTGAGATGGGCTGCCTGAGGGTGACTGTGAGGAA s mm5.chr11 196049 294 - 121648857 -----TCTGGGAACACTTTTTGCTCAAGATGGTCCACACCCTGGCTCCAAGTACCCACTCAGAGCACTGTAGATCAGGCCTCTCAATGGGTATCAAAGCTGGGGAGCTCCAAGG-CTTCTGGAAAAACAGCAGCTCTC------TGACCC--TAAGACTGTA-GTAGGCAAGGCGAGAC-------------------------------AAATTGGGGAGTGGAGAGGACCCAGATGGCTCAGGTCTAGACATAACTCTGTAGAACTCAGCA-------ATGCTGGGGTTGAGCAGCTACCATGTCCCTCCCCTACAAAA-AGATCACTTAAAGATGGTTG-GATGTG s rn3.chrUn 5834510 257 + 75822765 -----GCTGGGAACACTTTTTGCTCAAGATGGTTCACACCCTGGCTCCAAGTATCCAGT----TTACTGTAGATCGGGCCTCTCGATGGGTAGCAAAGCTGGGGAGCCCCAAGG-CTTCTGGAAAAAC---AGCTCTC------CAGACC--TAAGACTGCA-GTAGGCAAGGTGAGACCC-------------------------------ATAAGGGAGTGGAGAGGATGCAGATGGCTCAGGCCCAGGCATAACTGTGTACAACCCAGGT-------ACTATG-------------------TCCCTCCCCTACAGAA------------AGGTCACTG-GAAGAT a score=9645.0 s hg17.chr17_random 1083573 161 + 2618010 G--GGTCCAGGTCCAGCACCGTTTCAGCCCCTCAGGTCCCACGGAAGCCCAGTGT--------------TCTGGCA-CCAGGAG--------------------ACTCCGAGCACAACCTGG--GGCTCAGTTCTATCACTCGCGGCCCAGCCTG--------CTCCAC--ACCACTACCCCTCTG--------AAAAATCTGTTCTGTCTTCATTTC s panTro1.chrUn_random 236873536 161 - 240967748 G--GGTCCAGGTCCAGCACCGTTTCAGCCCCTCAGGTCCCACGGAAGCCCAGTGT--------------TCTGGCA-CCAGGAG--------------------ACTCCGAGCACAACCTGG--GGCTCAGTTCTATCACTCGCGGCCCAGCCTG--------CTCCAC--ACCACGACCCCTCTG--------AAAAATCTGTTCTGTCTTTATTTC s mm5.chr11 196343 141 - 121648857 T--GGCCTAG------------------TCTTAAGGGAACATTTTTGTCTAATGT--------------CTCAGCATCTAGGTA--------------------TCTCAGAACACAGTCTGGTTACCTCAGTCC--TCACTT---------------------CTCCACAAACTACTTTCTCTTTAAAACAAACAAAAAACTATTCTAATTTCATTTT s rn3.chrUn 5834767 138 + 75822765 GCTGGTCTTAGGGGAAC-----------------------ATTTTAGTCTAATGT--------------CCCAGCATCTAGGAG--------------------GCTTAGAACACAGTCTGGCTACCTCAGTCC--TCACTT---------------------CTCTACAAACTATGTTCTCTTTAAAACAAAGGAAAAACTCTTCTAATTTCATTTC s canFam1.chrUn 84701181 194 - 91062872 G--GGCCCGGCTCCCCCACCCGCCCCACTC--AGGGGCCCTGAGCAGCCCCGTCTTCCTCACCTGCGCCCCTGACG-CCAGGAGCACAGCGAACCCGCAGAGTTACTCCTCACGTGACGAGG--AGCAGCGACCTGCCGGCTGTGGGCCCGCGTGGGGCGGGACGGGACCGTCCACACCTGCTCAG-----------------GTCTGTCCACGTTTC a score=59083.0 s hg17.chr17_random 1083734 259 + 2618010 ACTCAGCGTCTGCATGCTGTGTCACCACATTTGGAATTATGCAAACTATTGTTATAAATAAATCACAGGCATCAAAAAGGGACCAAGCAGAAAATGAGCCAAACTCTGGAGCCTGCCGAGTCGCTT----GTGTGCCCTGCGGTGCT-GACACGGATCCCACCTAGACCTGTCTGTGCTCTCA----GGCCCTGGTGCACGTTGCCCTCCGGGCAGGGGCATCGGAGGAACAGCTGGACTCAGCCTCCAGAGCAAGGA-----------GGGGCGAGAA s panTro1.chrUn_random 236873697 259 - 240967748 ACTCAGCGTCTGCATGTTGTGTCACCACATTTGGAATTATGCAAACTATTGTTATAAATAAATCACAGGCATCAAAAAGGGACCAAGCAGAAAATGAGCCAAACTCTGGAGCCTGCCGAGTCGCTC----GTGTGCCCTGGGGAGCT-GACACGGATCCCACCTAGACCTGTCTGTGCTCTCA----GGCCCTGGTGCACGTTGCCCTCCGGGCAGGGGCATGGGAGGAGCAGCTGGACTCAGCCTCCAGAGCAAGGA-----------GGGGCGAGAA s mm5.chr11 196484 235 - 121648857 ACAAAGAATCTATGGGCCATATCAACCCATTTGCAATGATGAAAATTAATCTTATGAATAAACATCATACAT----------------------TGAGGCAAGTTTTGGTG-CTACCCAGTCACCCATGTGTGTGGCCCTCAGAGCTAGAGAGGGATCCCACCTGGACTTATCTATGCTCTCATATTGGCT---GAGCA-----TCTTCCAAG-AGGGTCAT-GGAGGGACAGATGAACTCAGCCTCTAGAGCAAGAG-----------GTAGGAAGAT s rn3.chrUn 5834905 231 + 75822765 ACAAAGAATCGACAGGCTGTGTCAACCCATTTGGAATGATGAATAAGTGTGTTATAC-------------------------------------TGAGGTAAGTTTTGGTG-CTGCCCAGTCACTCACGTGTGTGGCCCTCAGAGCTAGCGAGGGATCCCACCTGGACTTATCTATGCTCTCATCTCAGGT---AGGCA-----CCTTCCAAG-AGGGTCAT-GGAGGGGCAGATGAACTCAGCCTCTAGAGCAAGAAATAGGAAGATGGGAGAAGGAA a score=17157.0 s hg17.chr17_random 1083993 47 + 2618010 GGAGA--------------------AAGGGGCCTCCTTTCAGAAATCTCTCCTCTTACCAGATGCTA s panTro1.chrUn_random 236873956 46 - 240967748 GGAGA--------------------AAGGGGCCTCCTTTCAGAAATCTCTCCTC-TACCAGATGCTA s mm5.chr11 196719 67 - 121648857 GGAGAAAAGAAAGACAAGGTGGTGGAAAGGGCCTTTATTAAGTAATCGCTCCCTTTGCCAGCTGCTA s rn3.chrUn 5835136 56 + 75822765 AGACA-----------AGGAGGTGGGAGGGGCCCTCATTAGATAATCTCTCCCTTTACCAGCTGCCG s canFam1.chrUn 84701683 47 - 91062872 TGATA--------------------AAAGGGTCTTGATTCAGAAGTGTCCCCTCTCACCAGTTGGTA a score=23888.0 s hg17.chr17_random 1084040 196 + 2618010 TTTCACCACTAGAGATTCATTCCTTTGGCTTAGATTGTGTCTCT-GCATCTTCTATTAAATGCAGGCATCTGGCTGAGGAG----------------------GGCGCCAGCCTCTCTGTGGGCTTTGTTTGGG---TGGCACGCCG-TGGGCAGGGAAGCCAAGTGCAGAGACAGAAGTGGCCCAGGGGGTGGGAGGATGCCCAGTGGTCAGTGTGACCAGG s mm5.chr11 196786 217 - 121648857 CCTTGCCACTAGAAGTTCGTTGCTTTAACTTGCAGTGGGTCCCTAGTATTTTCTATTCTGTAACGGTGTCTGTTTGAGGAGATCAGCACTGTGTTA----CCAAGCACAAGTCACTCTATGGACTTTGTTTGGGCAATAACAAACCT-TGGAGAAGG-AGTCAAGTGCTGTGACAGCAGTGTCCTACCAAGTGAGAGGGTGTCCAACATTAAATGCAGCAGCT s rn3.chrUn 5835192 213 + 75822765 CCTCAGCACTACAAGTTCTTCGCTTTAGCTTTCAGTGTGTCACTAGCATTTCCTATCCTGTAAAGGTGTCTGGATGAGGAGAGCACCACTG----AGTTGTCAAGCACGAGTCACTCTATGGAC----TTTGGGCAAGAACATGCCT-TGGAAATGG-ATCCACGTACTGTGGCAGCAGTGTCCTATCAAGGGAGAGGGTGTCCAGCATTAAATGCAGCTGGG s canFam1.chrUn 84701730 187 - 91062872 TTTCACCATTAGATATGCATTCCTTT-GCCTGAATTACGTCACTCAGACTTCCTATGACATTCAGGTATCCGGACGCAGAG----------------------GGCACCAG------TGCATAC-----CCGAGCACCAGCCCCCCTGTGGGCCGGGGAGCCATGGGCGGAGACAG-AGCAGTGCGGTGGGTGGGAGGAAGCCCCAGGCTCAGTGCAGAAAC- a score=-191.0 s hg17.chr17_random 1084236 100 + 2618010 --GTGA-----GCACCAGC-GACATCTCTGAGGC--CAACAGAGACACCCCCGCCAGGTAGGAGAGAGG-------------------CATGAACAGAGAGGCAGGCAGAGCTG-AGGCAACCCGTGCAG s mm5.chr11 197003 103 - 121648857 --GAGAAAGTGGTAAAAGCAGACATTGATAAGATAACACTGGGGGCACTCCCA------GAGAGTAAGG-------------------CACTAGAAAGGGGGCTGAGAGAACCATAGTCAGCCCTGGCAG s canFam1.chrUn 84701917 116 - 91062872 GTGAGA-----GGAGGAGC---CGTGCTGAAGGC--CAGCGGAG-CACCCCCG--AGGTGAAAGAGAGGTTTGCATCAGTGGTGCCCCCGCTGCAGGGAAGATGGGCAGGGGTG-AAGGGCCCCGTGCAC a score=138.0 s hg17.chr17_random 1084336 4 + 2618010 CCAG s canFam1.chrUn 84702033 4 - 91062872 CTGG a score=69389.0 s hg17.chr17_random 1086005 789 + 2618010 AAATGCATGAA-CCGGACTggcacagtggct-----cttttgtgtaatcccaacactttgggaggccgagacggttggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaactccgtctctactaaagatacaagaTACTAGGCACAGAGCGAGCCAGCAGGGCTGCGCCCACTGTCTCTGAAAGATGGATCCCTccactgccccagtgggatgggagaccagcgaattcggccaaaaaaagactattcttgagccttacgatctaatgctgtttgctttattgccttcgtccctgctcaggacctgttaccctttcttctttcctatttctcctttttggaataggtgcgtctgtcctctgcctgtcccacccctgtgtttcccaagctcacatctcgtttgcttctgtaggctcacagctggaggagaatccgcctcgggatgaatcacaccttgagtctcacccagctgtgatttacatgatatttaaatgagacttttggacttagaccgtcaagttgatgctggaatgactggaaacttttggtctgttaggatggagtgaacctattttgcatatgaggcagacatgaattttgcagggcAGAAtgctatggctggaaagtttgtgtcctctaaaaattcctatgctgaaatcctagtccccaa-gactgaatatcaggaggtgnggtctttggggaggtga-taggtcatggtggcagagccactaatg-atgggatttgtgcccttaagaaagagggccaa-ggagctcATGCACC s panTro1.chr7_random 1294965 793 - 45233937 AAATGCATGAAGCCGGACTggcacagtggcttacgcct-----gtaatcccaacactttgggaggccgagacggttggatcacttgaggtcaggagttcgagaccagcctggccaacatggtgaaactccgtctctactaaagatacaaGATACTAGGCACAGAGCGAGCCAGCAGGGCTGCGCCCACTGTCTCTGAAAGGTGGATCCCTCGACTGccccagtgggatgggagaccagcgaattcggccaaaaaaagactattcttgagccttacgatctaatgctgtttgctttattgccttcgtccctgctcaggacctgttaccctttcttctttcctatttctcccttttggaataggtgcgtctgtcctctgcctgtcccacccctgggtttcgcaagctcacatctcgtttgcttctgtaggctcacagctggaggagaatccgcctcgggatgaatcacaccttgagtctcacccagctgtgatttacatgatatttaaatgagacttttggacttagaccgtcaagttgatgctggaatgactggaaacttttggtctgttaggatggagtgaacctattttgcatatgaggaagacatgaattttgcagggcAGAAtgctatggctggaaagtttgtgtcctctaaaaattcctatgctgaaatcctagtccccaaggactgagtatcaggaggtggggtctttggggaggtgattaggtcatggtggcagagcc-cttatgaatgggatttgtgcccttaagaaagagggccaagggagctcatgcacc a score=7392.0 s hg17.chr17_random 1087088 290 + 2618010 GGGCTGGAATGT-CTGTGCTGGCTTCCTTCCTCGCTCGTGGCTCTGTGGCTTGGACAGCTGCAGGCTGGCCGGAGCCGCTCCACTGGAGTCGCATTTCTGGGGCCTCAATTCCTGCTGTCAGCTGGGTTCCCCGATTTCTTTCCATGTAGCCTCAGGCTCTCTCCCTCTGCA-CGTGGCTTCTCCACCTGGTGTCTTTAGAGGGGCAGCTGGGCTTCATCCATGGTCACCTCTGGCTTCCAAGAG-GCATAAGACAGAGCTGCCCAGTCCTCGTGAGACTCAGACCCAGAACT s canFam1.chr37 16229664 281 + 33897405 GGTCTGGGATGTTCAACATTGCCTTCTTTATTCACAAGT---CTGGTGGCTTGAATAGCTGGGGGTTGGT---------TCTCCCGGGGGCATATGTTTGGAGCCTTGGTTCTTGCTCTCAGCTGGGTCCCTGAGTTCTCTTCCATGCAGTCTTAGCATCTGATCGTCCTCACcatggcctcttcccatggtctccagggcagtgtcactagacttcttaaatggcagcccagggctccaaagagtgcaaaagtggaagcttccaagtatttgtaaggcttcgacctgcgact a score=232.0 s hg17.chr17_random 1088678 8 + 2618010 ccAGCCCT s rn3.chrUn 5837341 8 + 75822765 CCCACCAT a score=16186.0 s hg17.chr17_random 1088686 149 + 2618010 CCTCGCCGCACCCCTGACCCCCACACGGGGCACAGCCAGGTGGTGTGTTGGGGCCC--GTCCCACCCCACCTAGGAGGCAGTGGTTTGGGACACATGTGCTGCCACTGCCCCCAGCA-----TCCCCTCCTGCTCCCACTCCCACCCTGCTCTGCC s mm5.chr11 199557 148 - 121648857 CCTCACTCCATGCCTGACCTC-ATAGAGACTACAGTCAGGAAGTGTTTTGGAGTCCTTATCCAAGCCCACCTGTGAGGCAGTGGCTTGGGGCACACAGGTCTTCCTCACTCCAACCA-------CTCTTCCATCCTCTCTGCTGCTCTACTCTGGC s rn3.chrUn 5837349 148 + 75822765 CCTCACTCCATGCCTGACTTC-ATGGAGACT--AGTCAGGAAGTGGTTTGGAGTCCTTATCCAAGCCCACCTGTGAGATAGTGGCTTGGGGCACAAAGGCCTACCTCAGTTCAACCACCCTTCCTTCCTCCACCCTCTCTGCTGCTCTACT----- a score=1460.0 s hg17.chr17_random 1088835 109 + 2618010 TGCCCTTGGCCTGGGCTTCTCTAGACCTTTGCATCCCCAGACTGGCCCCCCATCCAACTCCAGGCTAGTCTGTCTCTGGACACCATTGGGTGCATCACTTTAGAATATG s rn3.chrUn 5837497 63 + 75822765 -----------------------------------------CTGGCCACC-ACCCAAA--CAGAC--ATCTGTCTCAGGACACCACTGGGTATGCCATTTTAGAAAATG a score=138.0 s hg17.chr17_random 1088835 4 + 2618010 TGCC s mm5.chr11 199705 4 - 121648857 CACC a score=46605.0 s hg17.chr17_random 1090673 545 + 2618010 TGGTATCCTCAA-GTCCCCGTGGCTGCCCTGTGGAGAAGACTCTGTTGGGAGAGGGCGCTGCCTCCCAGAAGTGTCCCAAGGTCCAGGAAGGAATGGGGGGAAGAGGACAGGAGGGTGTTCTCACAGTCACTGTGACCTCTGGTGAGCAGAGGGTCCTTCTCAAGCTACTGAATCCTCATGGGGCTTGGGTGAGGGAGCGAGGATAGGCCAGGAGCCAGAGGCTCAGGAGGGGATGGCCTCACTGTGGAAGGTGCAGGGGTGGTCCAGCCTGAGCCCTCTGCCCCCCGCTGCAGCTCAGCACCCCCCCCCCCCACGCACACTTACCCAGGGGGTTGCAAAATGATGGGTGTTGGCT----------------CTGGAACTAATCCCATGTTGTTTCCCAGGGAAAGAGCCACACCCTTCTCAAAACTCTGGGCTGATACACCAAAAGGCAGCCCTGCCTGGGCTGCCCACCGCCCGTCACAAAAAGATCCCCCTGCAAATTTCACAGGCATCTGGATCGAATAACAAGCTGATAGGGCGTATAAAATTAGAGACAGAACTCT s panTro1.chrUn_random 4118112 558 + 240967748 TGGTATCCTCAAAGTCCCCGTGGCTGCCCTGTGGAGAAGACTCTGTTGGGAGAGGGCGCTGGCTCCCAGAAGTGTCCCAAGGTCCAGGAAGGAATGGGGGGAAGAGGACAGGAGGGTGTTCTCACAGTCACTGCGACCTCTGGTGAGCAGAGGGTCCTTCTCAAGCTACTGAATCCTCATGGGGCTTGGGTGAGGGAGCGAGGATAGGCCAGGAGCCAGAAGCTCAGGAGGGGACGGCCTCACTGTGGAAGGTGCAGGGGTGGTCCAGCCTGAGCCCTCTGCCCCCCGCTGCAGCTCAGCA----CTCCCCCCACGCACACTTACCCAGGGGGTTGCAAAGTGATGGGTGTTGGCTCTGGGTGGAAAAACACCTGGAACTAGTCCCATGTTGTTTCCCAGGGAAGGAGCCACACCCTCCTCAGACCTCTGGGCTGATGCACGAAACGGGAGCCCTGCCTGGGCTGCCCACTGCCCGTCACAGAACGATCCCGCTTCAAATTTCACAGGCATCTGGATCAAATAACAGGCTGATAGGGCATATAAAATTAGAGACAGAACTCT a score=23348.0 s hg17.chr17_random 1091316 337 + 2618010 AAAACAGTGGGAAACCCAACCTGGAAGGGAACCGGGGACCGGGTGGGGGGTGGTCCAAAAAAAACAACAAGCGGTTGGGGTGGGACACAAGGACTGTCCCGCCCAGGGAGG-CCCCCAGAACAGGAGGGCCAGAACCTACCGCCCCTCTGCAGGAACCCATCCCTGCTTCACTCCCTTGCTCCTAATTCTGAATTGGGCCCAACCTGAGTCTTCACCAAGTGGACAGTAACTCCTCCGGGCAACTGGGTGTGGGATCTGCAAGCTCAAGCAGCCAACCAGATACTAACGGCCTCCCTGCCCTCAAAAGCCCA-CCTGGGATGAACCTGAGCAAAGGCCC s panTro1.chrUn_random 4118856 331 + 240967748 AAGACAGTGGGAAGCCCAGCCTGGAGGGGAACGGGGGAC------GGGGGTG-TCCAGAAAAAGCAGCAGGAGGTTGGGGTGGGACACAGGGAGTGTGCTGCCCGGGTAGGTCCCCCAGACCAGGAGGGCCAGACCCTACCGCCCCTCCGCAGGACCCCATCCCTGCTTCACTCCCTTACTCCTAGTTTTGAGTTGGGCCCAGCCTGAGTCTCCACCAGGTGGACAGTAGCTCCTCGGGGCAGCTGGGTGTGAGATCTGCAGGCTCAGGCAGCCACCCAGATACTAGCGGCCTCCCTGCCCTC-CAAGCCCAGCCTGGGGTGAACCTTGACAAAGGCCC a score=191.0 s hg17.chr17_random 1149186 2 + 2618010 AG s panTro1.chr19 15539443 2 - 82489036 AG a score=6249.0 s hg17.chr17_random 1149188 27 + 2618010 GTGTGGAGACCAGGGAAAGCTACATGG s panTro1.chr19 15539445 27 - 82489036 GTGTGGAGATCAGGGAAAGCTACATGG s canFam1.chr9 10714652 27 + 53642819 GTGTAGGGGTCAGAGAAAGCTGCATGG a score=11107.0 s hg17.chr17_random 1149215 40 + 2618010 ATAAGCTAAAACTTTACTGGGGTCTTAAAGAGTAGTTATA s panTro1.chr19 15539472 40 - 82489036 ATAAGCTAAAACTTTACTTGGGTCTTAAAGAGTAGCTATA s rn3.chr10 18051503 40 - 110733352 ACAAAGTAAACCTTTACCTGTGGCTCAAAGGATGTCTATA s canFam1.chr9 10714679 38 + 53642819 ATAAGCTAAAACTTCAGCTGAGATTT--AGAGTGGCTATG a score=29717.0 s hg17.chr17_random 1149255 68 + 2618010 ATTTGTTAA--ATAGAAAAAAAAATGGGAGTACAGTCTAGGCAAAGGCATGGCTACAGGTATGGTTGGAA s panTro1.chr19 15539512 68 - 82489036 ATTTGTTAA--ATAGAAAAAAAAATGGGAGTACAGTCTAGGCAAAGGCATGGCTACAGGTATGGTTGGAA s mm5.chr11 18481028 66 - 121648857 ATTTATTGA--ACAGTAAAATCA--GAGAGTTCAACCTAGGCAAAGGCTTGATTATAAGAAAGATGGAAA s rn3.chr10 18051543 65 - 110733352 -ATTATTGA--ACCGTAGAATCG--GAGAGTACAACGTAGGCAAAGGCATGATTATAGGAAAGATGAGGA s canFam1.chr9 10714717 68 + 53642819 ATTTGTTAAATACAGCAAGAATA--GGGAGTATAGTCTAAGCAAAGGCACAGCTGCGAGAATGATCAGGA a score=437.0 s hg17.chr17_random 1149323 6 + 2618010 -TTTAGT s panTro1.chr19 15539580 6 - 82489036 -TTTAGT s mm5.chr11 18365624 6 - 121648857 -TTTAGT s rn3.chr10 18051608 4 - 110733352 -TTTA-- s canFam1.chr9 10714785 6 + 53642819 ATTAAG- a score=2927.0 s hg17.chr17_random 1149329 19 + 2618010 AGACCAATCTGGCTGCAAA s panTro1.chr19 15539586 19 - 82489036 AGACCAATCTGGCTGCAAA s mm5.chr11 18365630 19 - 121648857 GGAATCACTTACCAGCAAA s rn3.chr10 18051612 18 - 110733352 -GACAAGTCAGATTAAAAA a score=34157.0 s hg17.chr17_random 1149348 127 + 2618010 GAATTAGGTGAGGGAGCAATG-AAGATATGATTATGTAAAACCTTGACTATCAGCTATAGGAGTTTGAAAGCTACAAAATGGGGTATGGAAAGCCATTGAAAGTTTCCAAGC-------AAGAGAGATTAAATGA s panTro1.chr19 15539605 127 - 82489036 GAATTAGGTGAGGGAGCAATG-AAGATATGATTATGTAAAACCTTGACTATCAGCTATAGGAGTTTGAAAGCTACAAAATGGGGTATGGAAAGCCATTGAAAGTTTCCAAGC-------AAGAGAGATTAAATGA s mm5.chr11 18365649 121 - 121648857 ---------GAGAAAGCAATG--AGACAT-ATTATGAAATACTTTGAATATCAACTCTAGTGGTTTGAAAGTCACAGTAT--GCTATAGAGAACCATAGAACATTTCCAAGAACTACTGAAAAACTATTAAATGG s rn3.chr10 18051630 98 - 110733352 ----------------------CAGAGAC-ATTGTGTAAGATCTGGAATATCGACTATAGGATTTAGGAAGTGGCACGG-GGGACATGGAAAGTTATCAGAATTTTTCAGGA-------AAGAAAA---AAA--- s canFam1.chr9 10715016 125 + 53642819 GCattagcttaggaagcagtgaaagatacggttatgaatacccttgactatcagctagaagggtttgaaagttatgc--tgagatatagagagccattgaaagttttccaga-------aagacatatgtatca- a score=6928.0 s hg17.chr17_random 1149475 16 + 2618010 TTAAAACAAAAGGATT s panTro1.chr19 15539732 16 - 82489036 TTAAAACAAAAGGATT s rn3.chr10 18051728 16 - 110733352 TTAAGACAGGAGAATT s canFam1.chr9 10715141 16 + 53642819 ctaaaacaagaggatt a score=336.0 s hg17.chr17_random 1149491 28 + 2618010 CTTTCATTTTGTTTTGTTTTT-GCTTTAT s panTro1.chr19 15539748 29 - 82489036 CTTTCATTTTATTTTGTTTTTTGCTTTAT s canFam1.chr9 10715157 9 + 53642819 ----------gttttctat---------- a score=0.0 s hg17.chr17_random 1149519 35 + 2618010 GTTCAAGTGTAAACATGCAAAGGATTATTTTAGAA a score=1701.0 s hg17.chr17_random 1149519 18 + 2618010 GTTCAAGTGTAAACATGC s panTro1.chr19 15539777 18 - 82489036 GTTCAAGTGTAAACATGC a score=118.0 s hg17.chr17_random 1149537 2 + 2618010 AA s panTro1.chr19 15539795 2 - 82489036 AA s mm5.chr11 18365873 2 - 121648857 AT a score=7541.0 s hg17.chr17_random 1149539 15 + 2618010 AGGATTATTTTAGAA s panTro1.chr19 15539797 15 - 82489036 AGGATTATTTTAGAA s mm5.chr11 18365875 15 - 121648857 AGGATTATTTTAGCA s rn3.chr10 17960267 15 - 110733352 AGGATTATTTTAGCA a score=15663.0 s hg17.chr17_random 1149554 33 + 2618010 TCCATATGTAGAGTGCTC-AAAGGGAAAATCTTA s panTro1.chr19 15539812 33 - 82489036 TCCATATGTAGAGTGCTC-AAAGGGAAAATCTTA s mm5.chr11 18365890 33 - 121648857 CCCATGTGTTGAGTGATC-CAGGGGAAAAGCTTA s rn3.chr10 17960282 31 - 110733352 CCCATGTGTT--GTGATC-CAGGAGAGAAGCTTA s canFam1.chr9 10715166 34 + 53642819 tccctatgtagagagatctaaagaggaaagcttg a score=1556.0 s hg17.chr17_random 1149587 9 + 2618010 TTTCAGGGA s panTro1.chr19 15539845 9 - 82489036 TTTCAGGGA s mm5.chr11 18365923 9 - 121648857 ATTCTCGAT s canFam1.chr9 10715200 9 + 53642819 atccaggga a score=29414.0 s hg17.chr17_random 1149596 79 + 2618010 GACAAAATAGAAAGGAATAGCAAAATGTAGGAGTAAGGTGTGAAGGGGCTAAATCA----GATCAGTT-GTAATAAGAATGGAA s panTro1.chr19 15539854 79 - 82489036 GACAAAATAGAAAGGAATAGCAAAATGTAGGAGTAAGGTGTGAAGGGGCTAAATCA----GATCAGTT-GTAATAAGAATGGAA s mm5.chr11 18365932 84 - 121648857 GACCATGTAGAAGGATCTAGCAAAATTTAGGAATAAAGTGAGGGAGAACTGAGCCACTGTGGCCATTTGGTAGTGGGAAGGAAA s rn3.chr10 17960535 78 - 110733352 GACCATGTAGAAGGATCTAGCAAAATTTAGGAATACAGTGAGGGAGACCTGGGCCACTGTGGCTATTTGGCAGTGGGA------ s canFam1.chr9 10715209 79 + 53642819 aaccagaaagaatggtctagcaaaagctgggagtaaagtgacaaggggccagaaca----gaatggct-gtgataggagtagaa a score=1767.0 s hg17.chr17_random 1149675 6 + 2618010 AGAAAA s panTro1.chr19 15539933 5 - 82489036 AGAAA- s rn3.chr10 17960613 6 - 110733352 AGAAAA s canFam1.chr9 10715288 6 + 53642819 agaaaa a score=66.0 s hg17.chr17_random 1149681 10 + 2618010 AGCCTAGGAT- s panTro1.chr19 15539938 9 - 82489036 -GCCTAGGAT- s canFam1.chr9 10715294 10 + 53642819 -tcctgaaagc a score=-31.0 s hg17.chr17_random 1149691 1 + 2618010 G s canFam1.chr9 10715304 1 + 53642819 a a score=600.0 s hg17.chr17_random 1149691 1 + 2618010 G s panTro1.chr19 15539947 1 - 82489036 G s mm5.chr11 18367332 1 - 121648857 G s rn3.chr10 17961965 1 - 110733352 G a score=53083.0 s hg17.chr17_random 1149692 207 + 2618010 TTTCAACAGA--------GGGCAAAGCTTTGGTGTCACCTGGCATAGGGTTTCTTTCTACTTATTTATTG--ATAA---------------------------------TGA-TAAGCTTTTGC---CCATTTTTCTG------TTGAAGTATTTACCAT---------------------TTTTTATGTGT----AGAAGGAGTTAGTTTAGACACAT--AAGTGCTTTT-GGATAAAGGCCTTACATTCAAAGTAATTAACTGGCATCGTCTGTCCAAGAGATGGG s panTro1.chr19 15539948 207 - 82489036 TTGCAACAGA--------GGGCAAACCTTTGGTATCACCTGGCATAGGGTTTCTTTCTACTTATTTATTG--ATAA---------------------------------TGA-TAAGCTTTTGC---CCATTTTTCTG------TTGAAGTATTTACCAT---------------------TTTTTATGTGT----AGAAGGAGTTAGTTTAGACGCAT--AAGTGCTTTT-GGATAAAGGCCTTACATTCAAAGTAATTAACTGGCATCGTCTGTCCAAGAGATGGG s mm5.chr11 18367333 200 - 121648857 CTTCAACAGACAGCCCTTAAGCAAAGTTTTGGTATTACT---AATATGGTTTCTTAGTAGTTA---------ATAG---------------------------------TGATTAAAAATTTGC---CTATTTTAATGACCATATTAAATTTTAAATCAC----------------ATATATTTTTATGGGCTTAAAGAAGGAATTCATTTAGACACA--------------GTAAAAATACTT---------AGTAATTAACTCTCCTT-TTTAACCAAAAGGTGGG s rn3.chr10 17961966 220 - 110733352 CTTCAACAGACAGACCTTAAACAAAGTTTTGGTATTACT---AATATGGTTTCTTATTAACTA---------ATAG---------------------------------TGA-TAAAAATTTGC---CTATTTTCCTG------ATGAATTATTAACTACTATATTAAAGTTTGAATCATATTTTTATGGATTTATAGAAGGATTTTATTTAAACACA----AGTAATTTTGAGAAAAATACTT---------AATAATCAACTATCATTTTTTAACCAAAAAGTGGA s canFam1.chr9 10716222 253 + 53642819 TTTCAAAAGAAGTCACTGGGCCAAAGCTTTGGTGTTCCT-GGCATAGGATTTCTTTACCTTTGTTTCCTGGCATAGGATTTCTTTACCTTTGTTTTCTTTACCTTTGTTTGA-TACTTTTTTTTTTGCCATTTTTCGG------TTCAATTATT---------------------------TTCTCATTGATTTACAGAAAGAACCATTTTAGACACATAGAGGTGATTTGGAGAAAAATACCATATTCATAAAGTAATTAACTGGCATTATCTATCCAAGAAATTAG a score=613.0 s hg17.chr17_random 1149899 2 + 2618010 AT s panTro1.chr19 15540155 2 - 82489036 AT s mm5.chr11 18481411 2 - 121648857 AC s rn3.chr10 17962186 1 - 110733352 -T s canFam1.chr9 10716475 2 + 53642819 AC a score=194811.0 s hg17.chr17_random 1149901 436 + 2618010 GGATAGGAAGTTAAGCTTCC-AGGAGATGCCTCATCATTTGTGCCAGTGGCCCGGCATTACT---------TCTTGATGAACTGTGCAAAC---TGGGAAGCTAATAGCTCTGGAAGTGAGAAAGCAGGTGTTATTTTCTGTT----TCTGAATATCCCC--GACAAGGTTGCCATGATTCTTTTACTTATCCTGTTCATTCTTTTCCTACCTATTCAAGGATATAAACTGTGTTTCTTCACAGAAGTTACCAAGGAAACTATATTTCCTACATTGATGGAAATGTATGGAAAGCATACAGTTGGACCAAGAAACTGTGAGTATATTCTCTCCAAATGTGA---------------------CAAAAAACTA---------ACTGCATTGTAAGATCCTTCTTGGTCCAGAATTTTGAGGTCGGTACCTCTGAGAAAAGATATTT-CTCCTCCATATCCCAAATCAACC--TCTGTTGATTGCGATCC s panTro1.chr19 15540157 436 - 82489036 GGATAGGAAGTTAAGCTTCC-AGGAGATGCCTCATCATTTGTGCCAGTGGCCCGGCATTACT---------TCTTGATGAACTGTGCAAAC---TGGGAAGCTAACAGCTCTGGAAGTGAGAAAGCAGGTGTTATTTTCTGTT----TCTGAATATCCCC--GACAAGGTTGCCATGATTCTTTTACTTATCCTGTTCATTCTTTTCCTACCTATTCAAGGATATAAACTGTGTTTCTTCACAGAAGTTACCAAGGAAACTATATTTCCTACATTGATGGAAATGTATGGAAAGCATACAGTTGGACCAAGAAACTGTGAGTATATTCTCTCCAAATGTGA---------------------CAAAAAACTA---------ACTGCATTGTAAGATCCTTCTTGGTCCAGAATTTTGAGGTCGGTACCTCTGAGAAAAGATATTT-CTCCTCCATATCCCAAATCAACT--TCTGTTGATTGCGATCC s mm5.chr11 18481413 448 - 121648857 AGGTTAGAAGTTTGCCTTCTGAGGAAATGTCTCGTGGCTTGCACCAGTAGCCCTGCACCCTT-----------------AACTGCGCTCCC---TCGGAAACTGAGAAATCCGGGAATTAGAAAGTTGGTGTTGTCGTTTGTTCTTCTTTGAGCACCTCCATGAGAGAGTGAGGATG-----TCTACTGATTCTGCCGATTCTTTGCCTGTTTAGTCAAGTATGCAAAT--TGTTTCTTCACAGAAACTTCCATGGAAATGTTATTTCTTACATTGACAAAAATGTATGGAAAGCATACCGTTGGGCTGAGAAACTGTGAGTATGTTTTCTCCAAATATGAATATACAACAAACGAACAAACAAAAAAGCCC---------ACTGCGCTGTAAGTTCCTTCTTGGTCTAG-GCTTTGAGGCAAATACCTACGAGACAAGGTATTT-CCTCTTCATAACCCAAATCAAGC--TCTATTGCCTGAATTTC s rn3.chr10 18052065 467 - 110733352 -GGATAGAAGTTCACCCTGTGAGGAAATGTCTCACTGCTCGTCCCAGTAGCCCTGTACCCTTAACCGTGCTCCCTTGGAAACTGAGGAATTGGATGGGAGTCTGA------TGGGAATTAGAAAGTTGGTGGCATCCTTTGTTCTTCATTGAACACCTCCATGAGGGAGTGATGATT-----TCTACTGATTCTGCTGATTCTTCTTCTGTTTATTCAAGTATATAAAC--TATTTCTTCACAGAAATTTCCAAGGAAATGCTATTTCTTACATTGACAAAAATTCCTGGAAAGCATACCGTTGGGTTGAGAAACTGTGAGTATATTTTCTCCAAATATAAATATAAAACAAAGGAGCAGATAAGCAAACCAACCAAAACCACTGCACTCTAAGTTCCTTCTTGGTCCAG-GTTTTGAGGTAAATACCC-----ACAAGGTATTT-CCTCTTCACAGTCCAAATCAAGCTATATATTGACTGAACTTC s canFam1.chr9 10716477 427 + 53642819 AAATAGGAAGTTCTGGTTCTAATGAGATGGCT---TGTTTACACCAATGGCCCCACATTTCT------------TTATTAATTGTGCAAAC---TTGGATGCTGATAGCTATGGATATTAAGAAGCTGGT---ATTTTCTGCA----TTTGCATATTCCC--CCAAGGTTGCCTATGATTC-TTTACTTATTCTGTTCATTCTTTTCCTAACTAGTCAAGGATCTGAACTGTGTTTCTTCACAGAAATTTCCAAGGAAACGCTATTTCTTACATTGAGGAGAATACATGGAAGCCATACCGTTGGACTGAGAAATTGTGAGTATATTTTCTCCGAATACGAA--------------------TACAAAAC-----------ACTGCATCCTGAGATCCTTCTTAGTCAAAAATTTTGAAGTCAGTATCTTGGAGGAAAGGTATTTCCCCCTCCATATCCCAAATCAACC--TCTATTGATGGCAATTC a score=4099.0 s hg17.chr17_random 1150337 8 + 2618010 TATGGTTA s panTro1.chr19 52648549 8 - 82489036 TATGGTTA s mm5.chr11 18481861 8 - 121648857 TCTGGTAA s rn3.chr10 18052532 8 - 110733352 TCTGGTAA s canFam1.chr9 10716904 8 + 53642819 TATGTTTA a score=18967.0 s hg17.chr17_random 1150345 61 + 2618010 -TTTTAAAATTAAATTTGGTAGGCTCTCTTTAAAA-TAAGAGGCAATTTAAAtttatttttta s panTro1.chr19 52648557 61 - 82489036 -TTTTAAAATTAAATTTGGTAGGCTCTCTCTAAAA-TAAGAAGCACTTTAAATTTATTTTTTA s mm5.chr11 18482133 61 - 121648857 -TTTTTAGATTAAATTTTACGGACTCTCCCTGAAA-GCACGGACAATTTAAACTTGTCTGTCA s canFam1.chr9 10716912 63 + 53642819 TCTTGAAAATTGAATTTGACAGGCTCTCTTTAAAATTTAGAGTCAATCTAAACttattttcca a score=4488.0 s hg17.chr17_random 1150406 29 + 2618010 tcacagaaataatacgtggttatattctc s panTro1.chr19 52648618 29 - 82489036 TCATACAAATAATACATGGTTATATTCtt s canFam1.chr9 10716975 28 + 53642819 ttatatagg-aatacatgattatatcctc a score=66.0 s hg17.chr17_random 1150435 9 + 2618010 ttttttc--------tc s panTro1.chr19 52648647 17 - 82489036 ttttttcctcgtttttt a score=25479.0 s hg17.chr17_random 1150444 279 + 2618010 tcttttgttttttaagagacagggtcttactt--tgtcccccaggctggagtgcagtggcacaatcacagctcactgcagccttcacctcccaggcacaagtgatcctcccacctcagcctcccaagtagctgggaccacaggtgcatgccaccacgcccacctcattttgtattttttgtagagacagggtcttcctatgccatttaggctggtcctgaactcctgagctcaagtgatcctcccaccttggcctcctgaagtgctcatattacaggcatg s panTro1.chr19 15540700 279 - 82489036 tcttttgttttttaagagacagggtcc--cttaatgtcccccaggctggagtgcagtggcacaatcacagctcactgcagccttcacctcccaggcacaagtgatcctcccacctcagcctcccaagtagctgggaccacaggtgcatgccaccacgcccacctcattttgtattttttgtagagacagggtcttcctatgccatttaggctggtcctgaactcctgagctcaagtgatcctcccaccttggcctcctgaagtgctcatattacaggcatg a score=2057.0 s hg17.chr17_random 1150723 8 + 2618010 agccacca s panTro1.chr19 15540979 8 - 82489036 agccacca s canFam1.chr9 10717072 8 + 53642819 agccacta a score=0.0 s hg17.chr17_random 1150731 15 + 2618010 cccccaggccatgat a score=766.0 s hg17.chr17_random 1150731 10 + 2618010 cccccaggcc s panTro1.chr19 15540987 10 - 82489036 cccccagccC a score=1256.0 s hg17.chr17_random 1150741 5 + 2618010 atgat s panTro1.chr19 15540997 5 - 82489036 ATGAT s mm5.chr11 18482375 5 - 121648857 ATAAT s rn3.chr10 18053126 5 - 110733352 ATTCT a score=8041.0 s hg17.chr17_random 1150746 16 + 2618010 tctatttttaatgtat s panTro1.chr19 15541002 16 - 82489036 TCTATTTTTAATGTAT s mm5.chr11 18482380 16 - 121648857 TCCATTCTTAATGGAT s rn3.chr10 18053131 16 - 110733352 TACATTCTTAATGGAT s canFam1.chr9 10717080 16 + 53642819 tctggatttagtatat a score=0.0 s hg17.chr17_random 1150762 86 + 2618010 aaaaatgcaaaaacaggtataacaaaaaccctccttgtgtcctactccctcatccctgaggtaatgctgctctgcatttagtatac a score=19328.0 s hg17.chr17_random 1150762 66 + 2618010 aaaaatgcaaaaacaggtataacaaaaaccctccttgtgtcctactccctcatccctgaggtaatg s panTro1.chr19 15541018 66 - 82489036 AAAAATGCAATAACAGGTATAACAAAAACTCTCCTTGTGCCCTACTCCCTCATCCCTGAGGTAATG s mm5.chr11 18482396 65 - 121648857 ATAAATTTAATATCAGATATAG-AGAAATCTTCCTTGTGCTCTAAATTTTCACCACTGGGGTGATT s rn3.chr10 18053147 64 - 110733352 ATAAATTAAATATCAGATGTAG-AGAAACCTTCCTTGTGCTCTAGT-TTTCACCACTGGGGCAATG a score=123.0 s hg17.chr17_random 1150828 2 + 2618010 ct s panTro1.chr19 15541084 2 - 82489036 CT s mm5.chr11 18482461 2 - 121648857 GT a score=100.0 s hg17.chr17_random 1150830 1 + 2618010 g s panTro1.chr19 15541086 1 - 82489036 G a score=2803.0 s hg17.chr17_random 1150831 17 + 2618010 ctctgcatttagtatac s panTro1.chr19 15541087 17 - 82489036 CTCTGCATTTAGTATAC s mm5.chr11 18482880 17 - 121648857 CTGTGATTTTGGTATAG a score=3864.0 s hg17.chr17_random 1150848 9 + 2618010 atgcttcca s panTro1.chr19 15541104 9 - 82489036 ATGCTTCCA s mm5.chr11 18482897 9 - 121648857 ATCCTCCCA s canFam1.chr9 10717096 9 + 53642819 atccttcca a score=97213.0 s hg17.chr17_random 1150857 493 + 2618010 gactttttcc----catttgcctacatacatatttacataAGGCAAAATAGATTTGTTGTGTGGTTTT------TAAAATCTTTTTTC---TTTACCTAAATGGTAACTTCTTGCAACTTGATTCTTTTACT-----TCATGGTTATATATCTAATTTGACAAGTGTATCACCTATATGATATCATATACA-GTATCACTTATTGTATGACATGATATTCTTTCACTTCAT------GATTTCTTTCC--------TTCCcag---tacttagagggt-caccccatt---catttaaa---ctcctgc-----ataa-----tccacggtatggatgcactgtagtttatttaataattcccccattgatg-aattgttatattaggcttagttttcttgttacatgcgttgctgcaatgaa-atccccgtacatgcttctttgtgaatatgggcaagtattcctgtggaatagatatctagaaatggaattattggggtgaagactatgtagactatgtaGATATAAAATTTTAATTGCCCCCAAA s panTro1.chr19 15541113 494 - 82489036 GACTTTTTCC----CATTTGCCTACATACATATTTACATAAGGCAAAATAGATTTGTTGTGTGGTTTT------TAAAATCTTTTTTC---TTTACCTAAATGGTAACTTCTTGCAACTTGATTCTTTTACT-----TCATGGTTATATATCTAATTTGACAAGTGTATCACCTATATGATATCATATACGTGTATCACTTATTGTATGACATGATATTCTTTCACTTCAT------GATTTCTTTCC--------TTCCcag---tacttaaagggt-caccccatt---catttaaa---ctcctgc-----ataa-----tccacggtatggatgcactgtagtttatttaataattcccccattgatg-aattgttagattaggcttagttttcttgttacaggcgttgctgcaatgaa-atccccgtacatgcttctttgtgaatatgggcaagtattcctgtggaatagatatctagaaatggaattattggggtgaagactatgtagactatgtaGATATAAAATTTTAATTGCCCCCAAA s mm5.chr11 18482906 329 - 121648857 G--------------------------CCATATTCACATATAGAAAAATAGATTTAGCA---------------CAAATTCCTTTTTCATTTTTACATAACTGATAACATCCTGCAACTTGATATTTTCACT------------------------------------------------------------GT-----------------GTGATATT-----------------------------------------------------GAAAGT-TACTC---------TTTCCA---GTCCTGC-----ATAA--TATTTCATAGTATGTACACATCCATGAGAATTTAATATTATCCTGCTTG------TGTTTAGAGACTATCTGGCTTTTCTGTTACATGTCTGGCTGTAATAAA-TGTTCTGTATAC-------------CTTGGACAAGTGTTTCTATAGACCAGATATCTAGAAATAGAGCCTTTAGGATGGAGACCAT--------TGTACATATGAAATTTTAATAGCCCTAAAA s rn3.chr10 18053591 419 - 110733352 GATTTTGGTA----TATATCCCTCCAGACATATTTGCATATAA-AAAATAGATTTGTCA---------------CAAATTCCTTTTTCATTTCTACATAAATGATAACATCCTACAACTTGATGTTGTCACG-----GCATGATATTGAA--------------------AGCTACTTTTTAACATATA---GC---------------------TATTCT-----------------ATTTATTTCCAGAACTGGGTAACAT---TTCATAGAGTGTGCACATCAGTGAGAATTTAAGATTATCCTGCTGGTGTTTA-----GCAACTATCTAGGGGTGTTTTTGTTTGTTTGTTTGTTGTTTGTTTGTTT-GTTTGTTTG------------TTTTTTGCTCCATGTCTGGCTGTACTAAA-TGTCCTGTGTAC-------------CTTGGGCAAGTGTTTCAATAGGCCAGATATCCAGGAATAGAACCTTTGGGATGGAGATCAT--------GGTGCATTTGAAATTTTAATTGCCCTAAAA s canFam1.chr9 10717105 454 + 53642819 gatctttttccatgcatttgtctacatacatatttatagacaacaaaatAGGTTTGTTGTGGGATTTTCTTACCTTgtttttgtttttgtttttatataaatgataacttcctacaacttgattcttttgcttatgcttatgcttataaat-----------------------------------------gaatctttt--------------gattcttttatcttatgtcttagatttcttttc--------ttttagtgtatagatagggggt-taccccatt---catgtata---tgcctgt-----gtaatatattccaaagtatgaatg----------tatatagtaattctcatattgatgaaatgtttagactgtgtcccattttcttgtcacatgcgctgctgtagtgaactgcctcaaccatgcatctttgtgtatgtgggcaggtatttctgtagaatagatatctagaaatggaattgtttgaataaagactat---------gtagatgtaaaattttaatggccctcaaa a score=875.0 s hg17.chr17_random 1151350 4 + 2618010 GAAG s panTro1.chr19 15541607 4 - 82489036 AAAG s canFam1.chr9 10717559 4 + 53642819 aaag a score=91.0 s hg17.chr17_random 1151354 1 + 2618010 A s panTro1.chr19 15541611 1 - 82489036 A a score=67672.0 s hg17.chr17_random 1151355 393 + 2618010 CACTTCTGGAGAGTTTATATGATGACTGTGTGCAGGATAGTTTAGGAAGGGAGAGACTAGAGATGGAGACACCAGCC------------AGACAACGTAACACCATCCAGGTA-------AAGAGGGAGGGACAACAA--------------------------------------------------------GCCCCATCACTGTATAACTGAAGAAATCGCT---TTCATGAAATATTAAAGC-AATATAAAACCAAAAATGaatttatattaatatgatataaattaattatattaatatGATT-TGAATTAGTTCAAAGTTATGTATTAGGTAAAGGGGCAACTTCCTTTCAAATGCTGTGAAAGGATGTCTTTTATTTCTTCTGATCCTGAACTGGCTTAGGAAAACAGACCTGAACTAGGAAGGTGTATAAATGTGAGGCTATTTGTTTTAATATTAGAAACTATA s panTro1.chr19 15541612 393 - 82489036 CACTTCTGGAGAGTTTATATGATGACTGTGTGCAGGATAGTTTAGGAAGGGAGAGACTAGAGATGGAGACACCAGCC------------AGACAACGTAACACCATCCAGGTA-------AAGAGGGAGGGACAACAA--------------------------------------------------------GCCCCATCACTGTATAACTGAAGAAATCGCT---TTCATGAAATATTAAAGC-AATATAAAACCAAAAATGaatttatattaatatgatataaattaattatattaatatGATT-TGAATTAGTTCAAAGTTATGTATTAGGTAAAGGGGCAACTTCCTTTCAAATGCTGTGAAAGGATGTCTTTTATTTCTTCTGATCCTGAACTGGCTTAGGAAAACAGACCTAAACTAGGAAGGTGTATAAATGTGAGGCTATTTGTTTTAATATTAGAAACTATA s canFam1.chr9 10723667 456 + 53642819 cacttgtggagaattactCTGGTGACTGTGTGCAGGATGGATTAGAAAGGGAGAGACTAGAGATGGCAATGCCAGTCTGAAGAGTAGGTGGAAAATAAGGGACTAAGCTGGAATCAATGGAAGTCTGAGGGTCAACTATTATCAAGAATGGGTGTTTTCAAATAAAAATCCAGTACTATGTGGTGTTTTTTGTTGTCTCACCACT-TGCAACTGAAGCAGTTAATAAATTCATGGAATATTAAGGCAAATGTACAACCAAAAATGAATTTCTATTAACATGA----------------TGATATGATTCTGAGTTAGTTCAAATTTATGTATTGATTAGAGGGGTAACTTCCTTTCAATTTAAATGAAAGGATATCTTTTATTTTTTCTGGTATTGAATTGGCCTAGAAAAATAGAACTAAACCAAAAAGGTGTTCCAAAATGAGAATATCCCTTTTAATATTAGAAATTATA a score=11326.0 s hg17.chr17_random 1151748 47 + 2618010 TATAGAGATCAAAACTTTGAGCTCATAATCTAGGATTTGATGAGACT s panTro1.chr19 15542005 47 - 82489036 TATAGAGATCAAAACTTTGAGCTCATAATCTAGGATTTGATGAGACT s canFam1.chr9 10724546 47 + 53642819 TGTGGAGGTCAAAACTTTGAGCTCATAATCTAGAAATTGATGAGGCC a score=4901.0 s hg17.chr17_random 1151795 18 + 2618010 ACAAAAGGGCATCTAATC s panTro1.chr19 15542052 18 - 82489036 ACAAAAGGGCATCTAATC s rn3.chr10 18056829 18 - 110733352 ATAAGAAGTCATATAATC s canFam1.chr9 10724593 17 + 53642819 -TCAAATGTCCTCTAATT a score=1982.0 s hg17.chr17_random 1151813 10 + 2618010 AAGTCTACTG s panTro1.chr19 15542070 10 - 82489036 AAGTCTACTG s canFam1.chr9 10724610 10 + 53642819 AATTCTTCTG a score=618.0 s hg17.chr17_random 1151813 11 + 2618010 AAGTCTACTGC s canFam1.chr9 10724610 11 + 53642819 AATTCTTCTGC a score=300.0 s hg17.chr17_random 1151823 1 + 2618010 C s panTro1.chr19 15542080 1 - 82489036 C s mm5.chr11 18485276 1 - 121648857 C a score=146402.0 s hg17.chr17_random 1151824 336 + 2618010 TCTCAGGAAAAATTAATTCCAAAGTCTATTAAGTTGTA------TATTTTATTTATTAAAA---CTATGAAGGTAAGACTC-TAGGAGAGGTATGGGCAGGGTTAG-GGCTCTGGAAAGTTCAAAT-ACAAGTCCAAACGTTTAGAGT-----TGAAAAATGTGTATTCAATATT----ATTCTAAACTCTATTATTCATAC-TAATCGACATCTAATAACTTATCAAGGCAATATTTTCCT-------TTTCCTAGAGATTTATCCTGCAATAAAATACAGTCTATTGAAAGACATACATTTGAACCCCTACCATTTTTGCAGTTTATGTAAGTTACAAATAT-AACTTTATTGCATTTGGAATT s panTro1.chr19 15542081 326 - 82489036 TCTCAGGAAAAATTAATTCCGAAGTCTATTAAGTTGTG------TATTTTATTTATTAAAA---CTATGAAGGTA-----------AGAGGTATGGGCAGGGTTAG-GGCTCTGGAAAGTTCAAAT-ACAAGTCCAAACGTTTAGAGT-----TGAAAAATGTGTATTCAGTATT----ATTCTAAACTCTATTATTCATAC-TAATCGACATCTAATAACTTATCAAGGCAATATTTTCCT-------TTTCCTAGAGATTTATCCTGCAATAAAATACAGTCTATTGAAAGACATACATTTGAACTCCTACCATTTTTGCAGTTTATGTAAGTTACAAATAT-AACTTTATTACATTTGGAATT s mm5.chr11 18485277 352 - 121648857 TCTCA-AAATGACTAACTCCATAATCTATCAAGATCTATAGTTTTATTTTATATATTTGAATATCCTCAAGGATGAGACTCTTGGGAGATGGATGGACTGAGT----GGCTTTAAAATATTCAAA-------TCCAAAGGTTTACAGTTTAGATAAAAACATTGTATTTTCTACTTCCAACTCTAAGTTCTATTACTTATACGTACTAGATATCTATTAGCTAAGCAAAGCAATATTTCTCT-TTTATGTTTCCTAGGGATTTATCTTGCAATAAAATACATTACATTGAAAGAAGGACATTTGAGTCGTTACCTTTTTTGAAGTATATGTAAGTTACAATTAT-AACCCCTTTATATTTAAAATT s rn3.chr10 18056847 354 - 110733352 TCTCA-AAATGACTAACTCCACAATCTATCAAGATCTATAGTTTTATTTCACACGTTTGAATGTCCTAAAGGGTGAGACTT-TGGCAGACGGATGGACCGGGTAAGTGGCTCTAAGATATTCAGA-------TCCAAAGGTTTCAAGTTTAGACAAAAGCAGTTT-TTTTCTATT-ACAGCTCTACGTTCTATTAGTTATGCTGACTAGGCATCTAACAGCTAAGCAAAGCAATATTTCTCCTTTTATGTTTCCTAGGGATTTATCTTGCAATAAAATACATTACATTGAAAGAAGGACATTTGAGTCATTACCTTTTTTGAAGTATATGTAAGTTACAATTAT-AACCCCTTTATATCTGAATTT s canFam1.chr9 10724621 338 + 53642819 TCTCAGGAAAGATTACTTCCAGAATCTATCAAGAGCTGTAGT--TACTTCTTTCAT--------TTATGAAAGTGAGACTCTTTTAAGAGAGATGAGGAGAGTTAGGGGCTCTGGAAGGTTCAAATAACAAGTCCTTAAGTTCAGAGTTTAGGCAAAAGCTGCTTATTCAATACT----ATC----AGCCTACTAGTTA---------GGTATCTAATAGCTAATTGAGGCAATATTTTCCT-TTTACTTTTCCTAGAGATTTATCCTGCAATAAGATACAATCTATTGAAAGACGTACATTTGAACCACTACCTTTTTTGAAGTTTATGTAAGTTACAAATATAAATTTCATTATATTTGGGATT a score=-3140.0 s hg17.chr17_random 1152160 2 + 2618010 T----------------------------T s panTro1.chr19 15542407 2 - 82489036 T----------------------------T s mm5.chr11 18485629 30 - 121648857 TAATCCCCCTTGGTGACTTCAAACTTTGCT s rn3.chr10 17969586 2 - 110733352 T----------------------------T s canFam1.chr9 10724959 2 + 53642819 T----------------------------T a score=6427.0 s hg17.chr17_random 1152162 20 + 2618010 TATAAAACTTAATTATAAAC s panTro1.chr19 15542409 20 - 82489036 TATAAAACTTAATTATAAAC s mm5.chr11 18485659 20 - 121648857 AGTAGGACTCAGTAATAAGC s canFam1.chr9 10724961 20 + 53642819 TGTTAAACTTAATTGTAAAC a score=6624.0 s hg17.chr17_random 1152182 33 + 2618010 CTCTTTGCTAT--TCATTTTGAA--ATGATTAAAATT s panTro1.chr19 15542429 35 - 82489036 CTCTTTGCTAT--TCATTTTGAAATATGATTAAAATT s canFam1.chr9 10724981 37 + 53642819 CTCTTTGCTACAATCATTTTGAAATATGATTGTAATT a score=12927.0 s hg17.chr17_random 1152215 37 + 2618010 TGACCAGTAGAAAGGAACTAAAATTATATAGCAAACT s panTro1.chr19 15542464 37 - 82489036 TGACCAGTAAAAAGGTACTAAAATTATATAGCAAACT s rn3.chr10 17970161 37 - 110733352 TAGCTAATAGAAAGCAACCAAAATTACACAACAAATT s canFam1.chr9 10725018 37 + 53642819 TTATTAGTAGAAAGCTACTAAAATTATGTAGCGAATC a score=-114.0 s hg17.chr17_random 1152252 1 + 2618010 G s canFam1.chr9 10725055 1 + 53642819 T a score=100.0 s hg17.chr17_random 1152252 1 + 2618010 G s panTro1.chr19 15542501 1 - 82489036 G a score=4476.0 s hg17.chr17_random 1152253 8 + 2618010 TTTTTGTC s panTro1.chr19 15542502 8 - 82489036 TTTTTGTC s rn3.chr10 17970323 8 - 110733352 TTTTTGTC s canFam1.chr9 10725056 8 + 53642819 TTTTTGTC a score=10998.0 s hg17.chr17_random 1152261 34 + 2618010 TCTAGCAAGGATTAGTGTGAGAATTATTA-CACAG s panTro1.chr19 15542510 34 - 82489036 TCTAGCAAAGATTAGTGTGAGAATTATTA-CACAG s mm5.chr11 18485979 33 - 121648857 TCCAGCA--GACTGGGATGAGACCTAGTAGGACAG s rn3.chr10 17970331 32 - 110733352 TGTGGTAAAAAT--GAATGAGACTCGTCT-TACAA s canFam1.chr9 10725064 34 + 53642819 TGTAGCAAAGATTAGTGTAAGAATTATTA-TACAG a score=3126.0 s hg17.chr17_random 1152295 12 + 2618010 AT-----CATAGTGAAT s panTro1.chr19 15542544 12 - 82489036 AT-----CATAGTGAAT s mm5.chr11 18486012 17 - 121648857 ATAAGAGCACAGTAAAT s canFam1.chr9 10725098 12 + 53642819 AT-----CAGACTGAAT a score=971.0 s hg17.chr17_random 1152295 15 + 2618010 ATCATAGTGAATCAT s canFam1.chr9 10725098 15 + 53642819 ATCAGACTGAATCAT a score=846.0 s hg17.chr17_random 1152307 3 + 2618010 CAT s panTro1.chr19 15542556 3 - 82489036 CAT s canFam1.chr9 10725110 3 + 53642819 CAT a score=17503.0 s hg17.chr17_random 1152310 55 + 2618010 CAGAGAGcagtggttctcaactgatgtgattttgtactcaggtgacatttggtaa s panTro1.chr19 15542559 55 - 82489036 CAGAGAGcagtggttctcaactggtgtgattttgtactcaggtgacatttggtaa s rn3.chr10 17970363 55 - 110733352 TATATAGCTCTGGTTCTTAGTTGGTGTGACCGTGCACCCAGATGGTATTTGGCAA s canFam1.chr9 10725113 54 + 53642819 TCTAGAGAagtggttctcaactagggtgattttgcacccaggtgacatttgaag- a score=5586.0 s hg17.chr17_random 1152365 22 + 2618010 tgtccagagacagttttggttg s panTro1.chr19 15542614 22 - 82489036 tgtccagagacagttttggttg s canFam1.chr9 10725167 22 + 53642819 tgtctagagacatttttggttg a score=0.0 s hg17.chr17_random 1152387 1 + 2618010 a a score=91.0 s hg17.chr17_random 1152387 1 + 2618010 a s panTro1.chr19 15542636 1 - 82489036 a a score=-1203.0 s hg17.chr17_random 1152388 4 + 2618010 -taaa s panTro1.chr19 15542637 4 - 82489036 -caaa s mm5.chr11 18486203 4 - 121648857 -TGGC s canFam1.chr9 10725189 4 + 53642819 tcag- a score=88429.0 s hg17.chr17_random 1152392 237 + 2618010 actgtgggtgtgctcctggcatctggtgggcagaggccagagatgctgctaaacatcctccaaggtataagacaaacctccatggcaaagaattatagagtccaaaatgttgatggcactgaagttgtgaaatcctgTTCTAGAGAAATAAAGATCACTTAGCACAGATATTTACTGAGCATTCACTGTTTTGTATCTAATGCACCACAT-ATGCAATGTT-AAATTA--TAAATC------------------------------------------ATAAG s panTro1.chr19 15542641 237 - 82489036 actgtgggtgtgctcctggcatctggtgggcagaggccagagatgctgctaaacatcctccaaggtataagacaaacctccacggcagagagttatagagtccaaaatgtcgatggcactgaagttgtgaaatcctgTTCTAGAGAAATAAAGATCACTCAACACAGGTATTTACTGAGCATTCACTGTTTTGTATCTAATGCACCACAT-GTGCACTGTT-AAAGTA--TAAATC------------------------------------------ATAAG s mm5.chr11 18486207 205 - 121648857 ATTGTGGATAAGCTGCTGGCATCTGATGAGCAGACACCATAG-CGTCCCTAAACATCCTCCAGTATATAGGACAAACCTATAGAACAAAGAGTAGCTCAAGCCAAAATGTCAATGGTGCTAA-------AAATCCTCT--CAGAGAAGTAAACTT--------------------TGAACATTTGC-----TGTGGCTAATGTATTATATAATGCAAATAT-AAAATATCTAAATC------------------------------------------AAAAG s rn3.chr10 18057814 219 - 110733352 ATTGTGGATAAGCTGCTGTCATCTGGTGAGCAGACGTCATAGCCATTCCTAAACATCCTCCAGTATATAGGGCAAACCCATACAGCAAAGAGTAGTCCAACCCAAAATGTCAATGGCGCTAG-------AAAACCCCT--CAGAGAAGTAAAGATCACTGGGGGGAAAAAT----TGAGCATTTAT-------TGGCTAATGTGTTACAT-ATGTAGATAT-AAAATGTGTCAATC------------------------------------------ATAAG s canFam1.chr9 10725193 276 + 53642819 actgtagatatgctactggcatctagtgggcagaggccagagatggcgctaaacaccctataatgcacaggacagcccctcttaaaaaagag-gatccaaccataaatgtcaatagtgctga---tgtGAAATATTTTTCTAGAGAAATAAAGATTACCTAACACAAGTATTTATTGAGCATTTACAGATTTGTATCTAATGCAACACAT-GTAGAAACATGAAAATA--TAAATCTTTCATGCaaattttttaaatttaaatttctaaaaaaattttaaaaG a score=9673.0 s hg17.chr17_random 1152629 42 + 2618010 CCAGTATCTTCCACAGGGAGATTTCTTTAGTGCTTAGAGAAA s panTro1.chr19 38205197 42 - 82489036 CCAGTGTCTTCCACAGTGAGATTTCCTTAGTGCATAGAGAAA s mm5.chr11 18486412 30 - 121648857 CCAGTGTCATCCTC----AGAATTCTTTAGC--------AAA s rn3.chr10 18058033 38 - 110733352 CCAATGTCATCCTC----AGGATCCTTTAGCAAAGTGAGAAA s canFam1.chr9 10725469 41 + 53642819 -GCATATCTTCCATAGCGAGATAGTTTCAGGATATGGAGAGG a score=188015.0 s hg17.chr17_random 1152671 414 + 2618010 GGATTGACGTTACGTTCCATCCTATATAAATTAGACTCACAG-CAAATGATAAATGCTCTGAAATAAT-TTTTTTTTCCTTTGGCTTATGTTTTTTTTTTTTT-------TTGTAGAAATCTTGGTTGCAATTTACTAACAGAACTGAGCTTTGGAACATCTCAGGCCTGGCACAGAATGCAGTTTTTACACAAGTTGTAAGTGAAATAGAAGATGAATAAG----TGTAAACA--------TCTATTTATGTATAAAAAC-TCATACAATTATTGGTTAGCTGGGTA-TAAGCCCATTATGaactctgaaaagtatgtcttaagatccattt-------gtttttttcaaatggggaaactaaggtacaaagaggccaagagacttacATAGCTTATATATGACCTGCTCTGCTTGTCCTAGTTCTGA-CCTATGGCATGGGCA s panTro1.chr19 15542982 410 - 82489036 GGATTGAGGTTATGTTCCATCCTATATAAATTAGACTCACCG-CAAATGATAAATGCTCTGAAATAAT-TTTTTTTTCCTTTGGCTTATGTTTTTTTTTTT-----------GTAGAAATCTTAGTTGCAATTTACTAACAGAACTGAGCTTTGGAACATTTCAGGCCTGGCACGGAATGCAGTTTTTACACAAGTTGTAAGTGAAACAGAAGATGAATAAG----TGTAAACA--------TCTATTTATGTATAAAAAC-TCATACAATTATTAGTTAGCTGGGTA-TAAGCCCATTATGaactctgaaaagtatgtcttaagatccattt-------gtttttttcaaatggggaaactaaggtacaaagaggccaagagacttacATAGCTTATATATGACCTGCTCTGCTTGTCCTAGTTCTGA-CCTATGGCATGGGCA s mm5.chr11 18486442 413 - 121648857 ---GTGA-GTTATGTTTAATTATATATAAATTAGAATCACCA-GAAAT-ACAAATATCCTAGAGAG----TATCTTTTCATTGGCTTATGTCTTTTTATTGTTGTTATTATTTTAGAAACCTTGGGTGCAATTTACTCACTGAACTGAACTTTGGAACATTTCAAGCATGGCATGGAATGCAGTTTTTACAGCAGTTGTAAGTGAAGTAGAAGTTAACTAAGTATATGTAAATA--------CTTATTTGTGTGTTTAAAA-GAATGCAG-TATTGACTTACTAGGTG-TAAACCCTGTGGAAACTGTGGAAAGTTTGTCTTAAGATCCATCC-------ACTCTTTTCCAACAAGGAAACTAAGGCAC-AGGAGGCCAGGGGACTTGTGTATAT--TACAGGACAGGCTCTGCTT-TCCTGGTCCTGACCCTTCAGCACAGGCA s rn3.chr10 18058071 410 - 110733352 GTATTGAACTTATGCTTAATTATATATAAATTAGAATCATCA-CAGAT-ACGAATGTTCCAGAGAG----CATATTTTCATCGGCTCATGTCTTTTTGTTGTT---ATTATTTTAGAAGCCTTGAGTGCAATTTGCTCACTGAACTGAGCTTTGGAACATTTCAAGCATGGCATGGAATGCAGTTTTTACAGCAGCTGTAAGTGAAGTAGAAGTTAAGTAAGCTTATATAAATA--------CTTAGCTGTGTGTTAAAA---GGTGCGG-TATTAACTCACTGGGAG-TAAACCCTGTGCAAACTGCGGGAAGTTTGCCTTCAGGTCCACCC-------ACTCTTCTCCGACGA-GAGACTGAGGCGC-AGGAGGCCATGAGACTTGTGAGAAC--TGCAGGGCGTGCTCTGCTT-TCCTGGTCCCGA-CCTTCAGAACAGGCA s canFam1.chr9 10725510 432 + 53642819 GTATTGAGATTATGTTTCATCCTATATAAATTGGAATCACTGCCAAAGGGTAAATGTTCTGAAAGAATACCTTTTTTCCTTCTTCTTTTGCTTGTGTCTTTTT-------TTGTAGAAATGTTAGTTGCAATGTATTGACGGAAGTGAGCTTTGGAACATTTCAGGCCTGGCATGGAATGCAGTTTTTACATAAGCTGTAAGTGAAATAGAAAATAAACACA----TGTAAAAAATAAACAGACAAACAATATGTAAAAACATCATACATTTATTGGTTCAGTGGATGTTAAGCCCAGTATGAACTCTGAAAAGTATGTCTTAAAATCCATTCTTTTTTTTTTtttttcaaatgaggaaactaaggtacaaagaggccaagaggcttgtctaTCTCATAAATGGCACTCTCAGCTT-TCCCTGTACTCA-GCTTTGGTATGGGCA a score=5947.0 s hg17.chr17_random 1153085 39 + 2618010 AGAAAAGGCATCAAACAAGTGACCCCCAAATTAGTCTTA s panTro1.chr19 15543392 39 - 82489036 AGAAAAGGCATCAAACAAGTGACCCCCAAATTAGTCTTG s mm5.chr11 18486855 37 - 121648857 C-AAGTAACACCACTCAGGC-ACTCCTCACTAGGTCTTA s canFam1.chr9 10725942 39 + 53642819 ATAAAAGGCCCCAAGCAAATAACACCCAAGTCAACACTA a score=44.0 s hg17.chr17_random 1153124 4 + 2618010 TTCc- s panTro1.chr19 15543431 4 - 82489036 TTCc- s canFam1.chr9 10725981 4 + 53642819 -TCCT a score=14060.0 s hg17.chr17_random 1153128 151 + 2618010 tgggtggggtggctcaggcctgtaatcacagaactttgggagccgaggcgggtggatcacctgaggtcaggagttcaacaccagcctggccaacatagtgaaaccctgtccctactaaaaatgcaaaaaaattagctggttgtggcggtgc s panTro1.chr19 15543435 151 - 82489036 tgggtggggtggctcaggcctgtaatcccagaactttgggagccgaggcgggtggatcacctgaggtcaggagttcaacaccagcctggccaacatagtgaaaccctgtccctactaaaaatgcaaaaaaatgagctggttgtggcggtgc a score=21597.0 s hg17.chr17_random 1153279 117 + 2618010 AGTTTTTTGCTCCCTGGGGGACTTTGTGTTAAGCTTTCTTCCTTGCAGCTAAATGTTGCAGACATTTAAGCAGTTATAAACTCTGCATATGAGCAGGAATCAAAGTTAAATCCAAAG s panTro1.chr19 15543586 117 - 82489036 AGTTTTTTGCTCCCTGGAGGACTTTGTGTTAAGCTTCCTTCCTTGCAGCTAAATGTTGCAGACATTTAAGCAGTTAGAAACTCTGCATATGAGCAGGAATCAAAGTTAAATCCAAAG s canFam1.chrUn 25430886 115 - 91062872 ACACTTTTGCTCCCTGGAGAA--TTCCCCTACACTTAGTTCTTTGAAGCTTTATTTTGCATGCATTGAAGCAGTTAGGAACTTTGCCCATTAGCAGGAATCAAAGTTAAATTCAGAG a score=38044.0 s hg17.chr17_random 1153396 404 + 2618010 TGTAGggccaggcgtggtggctcacgcctgtaatcccagcaccttgggaggccaagatgggaggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaatcccgtctctactaaagatacaaaaattagcaggtcgtggtggcaggtgcctgtgatcccagctattgaaaggctgaggcacaagaatggcttgaacccgggaggtggaagttgcagtgagccaagattgtgccactgcactccaacctTCCCTccaggctggtctcgaactcctgtgacctcaggtgatccacccatctcagcctcccaaagtgctggagttacaggtgtgagccaccatgcctggcCAAGATAGTGTTTATATTAAGCAATTGTGCCAAAAAAAAAGAAA s panTro1.chr19 15543703 404 - 82489036 TGTAGggccaggcgtggtggctcacgcctgtaatcccagcaccttgggaggccaagatgggaggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaatcccgtctctactaaagatacaaaaattagcaggtcgtggtggcaggtgcctgtgatcccagctatcgaaaggctaaggcacgagaatggcttgaacccgggaggtggaagttgcagtgagccaagattgtgccactgcactccaacctTCCCTccaggctggtctcgaactcctgtgacctcaggtgatccacccatctcagcctcccaaagtgctggagttacaggtgtgagccaccatgcctggcCAAGATAGTGTTTATATTAAGCAACTGTGCCAAAAAAAAAAAAA a score=23110.0 s hg17.chr17_random 1153800 157 + 2618010 AAATTTTGTGAAGA---------AAATACATCGCTCTATTTTAATTCCATATA---CATTCCTGACTACTCTTCTACCATAAGTGC-------------------AAGAATTCTATGATTTCTCTGTATAACATACCCAGCAAATCAGAGT-GGGTATATTCAATCGCCTGAAGGGGAGTTTAGACTCA s panTro1.chr19 15544107 154 - 82489036 A---TTTGTGAAGA---------AAATACATCGCTCTATTTTAATTCCATATA---CTTTCCTGACTACTCTTCTACCATAAGTGC-------------------AAGAATTCTATGATTTCTCTGTATAACATACCCAGCAAATCAGAGT-GGGTATATTCAATCGCCTCGAGGGGAGTTTAGACTCA s canFam1.chr9 10726340 184 + 53642819 AAGTTGTGTGAAAAATGTTCATGAAATACATTGCTGTAGCATAATTCCATGTGGCTATTTCCTGACTCTTCTTCAATAAGAAGTGTGTTATTCCCTTCTCGGCTGGAAAATTCTGTGATTTCCTGG--TGATATA---AACAAATCATAGTGGGGGATGTTCAATGGCCTGAGGGGGATTTTAGACTCA a score=37327.0 s hg17.chr17_random 1153957 197 + 2618010 AGGTGAAGATTCTCCTCCACATCTGACTTTAGAAAAGACTTTC-CACTTCTCTTGTGGTTCAGAAATCTAGTTTCACACAGTTCATTTTGAGGTAGAGGGAGGCGTTCAGGATGTGTCTGGA-CTAGAGCAGCAGTTTCTGCAGAT----------------GCTCCTCTCTGTCCTCATTAATTTGCTGATGCTTAACTTAGGGAAGGGGCACT s panTro1.chr19 38206499 197 - 82489036 AGGTGAAGATTCTCCTCTACATCTGACTTTAGAAAAGACTTTC-CACCTGCCTTGTGGTTCAGAAATCTAGTTTCACGCAGTTCATTTCGAGATAGAGGGAGGCATTCAGGATGTGTCTGGA-CTAGAGCAGCAGTTTCTGCACAT----------------GCTCCCCTCTGTCCTCATTAATTTGCTGATGCATAACTTAGGAAAAGTACACT s canFam1.chr9 10726524 215 + 53642819 AGGTGAAGATCTTCCTCTAAACGTGACTTTGGAAAAGATTATCTTACCTGTCTTGTAGTTCAGAAATATTATTTCACACAGTTTATTTTAGGATAGATGAAGGTGTTGAGGGTGTGTCTGGAGCTAGAGGGACAGTTCCTGCAGATGCCTATCTGTTGAAGGGCTCCTCTCTCCTCCCATTAATTTGCTGATGCCTAACTTGGAAAAAGACTACA a score=26882.0 s hg17.chr17_random 1154154 145 + 2618010 GAGGGTCTGTTTTTCATTTGCTCTCACACCAGAGAACAGGCTCATTAGGTCCCTCCATCAAGAGGTTTAGGTAGCATCAATACAAATGTCTTAAATTCACCACCTTTA---CTAAACACTTTAT-ACACCGGGAGTCCCTCAAAAGAAT s panTro1.chr19 15544458 145 - 82489036 GAGGGTCTGTTTTTCGTTTGCTCTCACACCAGAGAACCGTTTCATTAGGTCCCTCCATCAAGAGGTTTAGGTAGCATCAATACAAATGTCTTAAATTCACCACCTTTA---CTAAACACTTTAT-ACACTGGGAGTCCCTCAAAAGAAT s canFam1.chr9 10726739 147 + 53642819 GAGGGTCAGTTTTTTGCTTGCGAACACCCCGGAGAAAAGGCTCATTGGGTTTCTGCACCAGGAGGTTTTGGT-GCATCAATAT-ACTGTCTTAAACTCACCATCTTTATTTCTAAGCATGTTATCACACCAAGAGTCTCTTAGAAGAAT a score=5875.0 s hg17.chr17_random 1154299 61 + 2618010 CTGGCagccaggagcagtggctcatgcctgtaattccagcacttctgaaggctgaggtggg s panTro1.chr19 15544603 61 - 82489036 CTGGCAgccaggagcagtggctcatgcctgtaattccagcacttctgaaggctgaggtggg a score=16245.0 s hg17.chr17_random 1154360 220 + 2618010 cggatcacatgaagtcaggagttcaagaccagcctgactaacatggtgaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggcgggcacatgtaatcctagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccaaggtcatg---ccattgcactcaagcctgggtgacagagcaagattc s panTro1.chr19 38206898 219 - 82489036 tggatcacctgaggtcaggagttcaagaccagcctgaccaacatggtgaaa-cctgtctctactaaaaatacaaaaattagctgggcatggtggcaggcaactgtaatcctaggtactcaggaggctgaggcaggagaatcacttgaaaccaggaggcggaggttgcagtgagccgag---atggcaccattgcactccagcctgagggacagagtgagactc a score=3939.0 s hg17.chr17_random 1154580 73 + 2618010 cgACGGAGATGGGGT---------CTGGCTCAGCCTGACCtcaggctggtctggaactcctgacctcagatgatccacccac s panTro1.chr19_random 14379690 70 + 57627672 cAACagagatggggttttactacgttgg------------tcaggctggtctggaactcctgacctcagatgatccacccgc a score=4124.0 s hg17.chr17_random 1154653 78 + 2618010 ctgagcttcccaaagtgctgggattataggccttagccaccaggc-ccagcCAATAAACGGAAACTTTAACTTAAAAGA s panTro1.chr19_random 14379760 78 + 57627672 ctg-gcttcccaaagtgctgggattataggcctaagccaccaggcaccagcCAATAAATGGAAACTTTAACTCAaaaga s canFam1.chr9 10726886 39 + 53642819 CTGAATTTCCaaaaaagaaag-------------------------------aaaagaaagaaa---------gaaaga a score=15105.0 s hg17.chr17_random 1154731 90 + 2618010 aggaagggaggaagggagggagggagggaggacaaggagggagggaaggaagggaagggaaagaaagagggaggaagggaAATGAAAGAA s panTro1.chr19 15545076 89 - 82489036 agggagggagggagggagggagggagggaggacaaggagggagggaaggaagggaagggaaagaaggagggaggaagggaAATGAAAGA- s canFam1.chr9 10726925 89 + 53642819 aagaaagaaagaaagaaagaaagaaagaaaga-aagaaagaaggaaagaaaagaaagaaaagaaagaaagaaagaaaggaaaggaaagaa a score=3531.0 s hg17.chr17_random 1154821 42 + 2618010 AGAGAAAGAAAAGAAAAATTTAAAAAACCATAAGGTTAAAGT s panTro1.chr19 15545165 39 - 82489036 ---GAAAGAAAAGAAAAATTTAAAAAACCATAAGGTTAAAGT a score=40516.0 s hg17.chr17_random 1154863 194 + 2618010 AAACCCTTTTTCTTCATACAGATTAAGCACAtg-----------------agttcagattacagctttgtttcttaatagcttggtgacctaggacaagttatgttacctctctgtgcctcagtttcctcatttataaaataggg---caataatatctaccacataaggttattgtgaggattaaatgtgaaatgctgatcacaaatacctag s panTro1.chr19 15545204 194 - 82489036 AAACCCTTTTTCTTCATACAGATTAAGCACAtg-----------------agttcagattacagctttgtttcttaatagcttggtgacctaggacaagttatgttacctctctgtgcctcagcttcctcatttataaaataggg---caataatatctaccacataaggttattgtgaggattaaatgtgaaatgctgatcacaaatacctag s canFam1.chr9 10735147 214 + 53642819 AACCCCCTTTTCTTCATGTGAGTTACAcacaggctttggagtcagaactcagttcaaattccagctctgcttctgactggcttgacaaactcggacaaattatgtaacctctctgtacctcagtttcctcatttgtaaaatgaggtgatgatagtatctatcacataaggttattataaggattaaatgtgaaatgctgatcacagatgcctta a score=8610.0 s hg17.chr17_random 1155057 72 + 2618010 cagcccaata--gaaactcactgtaataattattattTTTATAATTTCTGCAAAAGTA----CAGTGATTCTTGG-GTT----- s panTro1.chr19 15545398 72 - 82489036 cagcccaata--gatactcactgtaataattattattTTTATAATTTCTGCAAAAGTA----CAGTGATTCTTGG-GTT----- s mm5.chr11 18391553 71 - 121648857 CAGCACAATC--AATGTTAGTCAAAATAATTATTA-----ACATGTTCTGTAGACATA-AACCAATCATGATTAGCTTT----- s canFam1.chr9 10735361 81 + 53642819 cagcccaataatagtattggttatGAAGATTATCTATCTAATA--CTTGGTAAAAGTATAGTTAATGATTCTTGA-GTAGAGTC a score=15039.0 s hg17.chr17_random 1155129 120 + 2618010 AACCT-AAAGGGTGGTTTTCTTTTA-TTTCTTCCTGTTTCTTTT---CTTTTTCTCATTCACTTTAAAGAATTAAAAAGAAAATAGATTC-----CAGCATT-------TTGGAATAAAAATTCACATCAAAATGAA s panTro1.chr19 15545470 120 - 82489036 AACCT-AAGGGGTGGTTTTCTTTTA-TTTCTTCCTATTTCTCTT---CTTTTTCTCATTCACTTTAAAGAATTAAAAAGAAAATAGATTC-----CAGCATT-------TTGGAATAAAAATTCATATCAAAATGAA s mm5.chr11 18391624 114 - 121648857 AACCT-GAATGCAGATTTTCTATTA-CTCTATTTAACTTCAATTAAATTTATTTTTGTTTGTTTCCAAGGCCGGGCAAGAGCACAAGCCCTGTGTCTACAGT-------GTGGGGGAGAGTAT-------------- s rn3.chr10 18064848 117 - 110733352 AACCTAAAATGTTTTTTTTTTCCTG-TTTCACTTCAATTCTCCTATTTTATTTTGTTTTTGTTTGTCAGCCTGGGCAACTAAACAAGGCC-----CTCTGTCAAGAGAGGGGGGATAGAGAAT-------------- s canFam1.chr9 10735442 117 + 53642819 AACCT-CAAGGCAGATTGTCTTTTCTTTTCTTCCTATTTCT------TTTACCTTTTTTCATTTTAAAGAGTTGGGAAGAAGGTCTGTT------CAGCATT-------TTGGAATAAAAGCTTGTGTCAAAAAGAT a score=0.0 s hg17.chr17_random 1155249 22 + 2618010 TTTATTCATTTATTGACATATA a score=91.0 s hg17.chr17_random 1155249 1 + 2618010 T s panTro1.chr19 15545590 1 - 82489036 T a score=8277.0 s hg17.chr17_random 1155250 21 + 2618010 TTATTCAT-TTATTGACATATA s panTro1.chr19 15545591 21 - 82489036 TTATTCAT-TTATTGACATATA s mm5.chr11 18509134 22 - 121648857 TTATTCATCTTATTGGCGTATA s rn3.chr10 18064965 22 - 110733352 TTATTAATTTTATTGGCGTATA a score=62936.0 s hg17.chr17_random 1155271 351 + 2618010 AACAAAATGTCatttgtttattcaataaacatt---tattaaatccctagtaaatttcagacatgatgccagtcacagggatgacaatgacgataagatgtggtctctgccctcaaggagctgata--gcccaggagactgacaagtagaca--------------------ga--tgatta--taTGCAA---------------------TGTAACAAAGGCTGTGATGTCAT--------------ACAAGAAGACAAGTGAGAGTA-----------------------------TGTGATA---------------------------------GGAGTATGGTTTTGAC-----------------------------------------------------CAGTTCCTCCTCTTAGATTTATCCCTTTTACTTTGGCTATAAAGCAAAAGAATTGGTCCTATTTTTTTTTTCCTTAACTGTGCAAATTAAACCATAAAATTTAAAAACTTTATGAAGATAAA s panTro1.chr19 15545612 346 - 82489036 AACAAAATGTCatttgtttattcaataaacatt---tattaaatccctagtaaatttcagacatgatgccagtcacagggatgacaatgacaataagatgtggtctctgccctcaaggagctgata--gcccaggagactgacaagtaggca--------------------gg--tgatta--taTGCAA---------------------TGTAACAAAGGCTGTGATGTCAT--------------ACAAGA---CAAGTGAGAGTA-----------------------------TGTGATA---------------------------------GGAGTATGGTTTTGAC-----------------------------------------------------CAGTTC-TCCTCTTAGATTTATCCCTTTTACTTTGGCTATAAAGCAAAAGAATTGGTCCTATTTTTTTTT-CCTTAACTGTGCAAATTAAACCATAAAATTTAAAAACTTTATGAAGATAAA s mm5.chr11 18509156 479 - 121648857 AAC--AATGTTGCTTACTTGTCCCATAAACACT---TGTTAAATACCAGGGTCAATCCAGGTGCCCTTCCAGGCACAGGGGTGACAATGACTATAAGGCACAATCATTTCCT-----GAGCTCATCATGGCCAGGAGCCTGGCACCTGCACACACAGGCTTGTTCAGTCTGTGA--TGATCAAGAACACAAGGGAAACTGGTGGAGCTTGGCTGTGACCAGAGCCCAGCTGTGACAGGGGCCAGCCTTGACAGGGAGCCTGGCTATGATAGGGGGCCTGGCTGTGACAGGGGGCCTGGCTGTGACAG--------------------------------GGAGCCTGGCTATGACATGGGGCCTGGCTGTGGCAGGGGGCCTGGCTATGATAGGGGGCCTGGCTGTGACAGGGGCTACTCTTAA------CAGTCATACTTTTCCTCCAAAGCCAGGAAAACTATCTTCTTATTATTATTCTTGACTTAGCGAACT-AACTACAAAGTGTTTTAGACTTCTAAAAATGGA s rn3.chr10 18064987 365 - 110733352 AAC--AATGTTGCCGACTTATCCCAT-AGCCCT---TGTTAAACACCACGCTCGATTCAGGCGCCCTTCCAGACACAGGAGTGATGGTGGATATAAGGCACAGTCTTTGTCCTCCT-GAGCTCAT---GGCCGGAAGCCCGGCACATGCACA--------------------GGCTTGCTCA---------------------------------------GGCTGTGATGACGA--------------TCAAGACCACAAGTGAGACTG-----------------------------TGTGGTAGAGCCCAGCTGTGGCTGGCGTCCCGCTGAGACCAGAGCCTGGCTGTGAC--------------------------------------AGGAGCTGGA-----CTGTGGCTACTCTTAA------CAGTCTTACTTTTCCTCCAAAGCCAGAGAAACTGTCCTATTATTTT---TCCTGGTTTAGTGAACT-AACTACAAAGTGTTTTAGATTTCTAAGAAAGGA s canFam1.chr9 10735559 328 + 53642819 GACAAGATGtc----ctttattcaacaaacattaaatagtcaataacaagcactat------actatgtcaggcacagggacaac-atgacaataaagtatggtccctgccctccaggagccgaga--atccagGAGATTGATAAGGAAACA--------------------GG--TGAT-A--CATGCCA-----------------------TGACAAAGGCTGTAAT-------------------GCAAGAATACACAC-AGGCTA-----------------------------TGTGGTG---------------------------------GGAATATAGCTTTCAC-----------------------------------------------------CGG---CTGCTCATAGATTTAGCCCTTCTTGTTTGGCTCCAAAACTGAAGAATTGGTTATCATTTTGT---CTTTAACTGGGTGGTTTAAACTGTAGGATTTTTAAACTTTCTAGAGATAAA a score=1146.0 s hg17.chr17_random 1155622 2 + 2618010 AG s panTro1.chr19 15545958 2 - 82489036 AG s rn3.chr10 18065354 2 - 110733352 AG s canFam1.chr9 10735887 2 + 53642819 AG a score=1329.0 s hg17.chr17_random 1155624 7 + 2618010 GCAAGCa s panTro1.chr19 15545960 7 - 82489036 GCAAGCa s canFam1.chr9 10735889 7 + 53642819 AAAAGCA a score=27012.0 s hg17.chr17_random 1155631 304 + 2618010 gtcaggtgcagtggctcacgcctgtaatcttaacactttggtaggccaagggggatggatcacctgaggttaggagtttgagaccagcctgtccaacatgacaaaaccccgtctgtactaaaaatacaaaaattagctgggcgtggtggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatagagccattgctctccagcctgggcgacagagcaagactccatctcaaaaaacaaa--aacaaaaaaaaCC s panTro1.chr19 15545967 304 - 82489036 gtcaggcgcagtggctcacgcctgtaatcctaacactttggtaggccaagggggatggatcacctgaggttaggagtttgagaccagcctgtccaacatgacaaaaccccgtctctactaaaaatacaaaaattagctgggcgtggtggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatggagccattgctctccagcctgggcaacagagcaagactccatctcaaaaaaaaaacaaacaaaaaaa--C a score=1385.0 s hg17.chr17_random 1155935 8 + 2618010 CGAGCAAC s panTro1.chr19 15546271 8 - 82489036 CGAGCAAC s mm5.chr11 18509635 8 - 121648857 TAAGCACC a score=4422.0 s hg17.chr17_random 1155943 8 + 2618010 TTGAATTA s panTro1.chr19 15546279 8 - 82489036 TTGAATTA s mm5.chr11 18509643 8 - 121648857 TTGAATTA s canFam1.chr9 10735898 8 + 53642819 TTGAATTA a score=10778.0 s hg17.chr17_random 1155951 27 + 2618010 TGGAGG-ACACTAGATATAGTGTTTCCT s panTro1.chr19 15546287 27 - 82489036 TGGAGG-ACACTAGAAATAGTGTTTCCT s mm5.chr11 18509651 28 - 121648857 TGGAAATACATTAAAAATATTCTTTTCT s rn3.chr10 18065563 27 - 110733352 CAAACA-AACCAAAATAAAGCCTTTCCT s canFam1.chr9 10735906 27 + 53642819 TGGAGG-ACACTAGAAATAGTATTTCCT a score=551.0 s hg17.chr17_random 1155978 12 + 2618010 GCAGAGTCAGGG s panTro1.chr19 15546314 12 - 82489036 GCAGAGTCAGGG s rn3.chr10 18065590 12 - 110733352 ACACAGTAAGAG s canFam1.chr9 10735933 10 + 53642819 ACAGAAATTA-- a score=77617.0 s hg17.chr17_random 1155990 191 + 2618010 CTTCCTACCAACATAGTCA-CTTCTAGGGTTTTTGACCTGAAAAGTTCTGCAGCATATTTTTTCTTTGCTATCCACTTGTT---TTTTTTTTTTCTATTTCTTCCCCTCTTTCTCTCCTCTATCTTCTAGAGACCTAGGTAGTTCCCAAAGGAATAGTGCTTTACAGATTCTAATGGTGATTTAT---------TAGGTAAAAA s panTro1.chr19 15546326 192 - 82489036 CTTCCTACCAACATAGTCA-CTTCTAGGGTTTTTGACCTGAAAAGTTCTGCAGCATATTTTTTCTTTGCTATCCACTTTTT--GTTTTTTTTTTCTATTTCTTCCCCTCTTTCTCTCCTCTATCTTCTAGAGACCTAGGTAGTTCCCAAAGGAATAGTGCTTTACAGATTCTAATGGTGATTTAT---------TAGGTAAAAA s mm5.chr11 18509877 181 - 121648857 CTTACTACCAGTGTAGTTGTCGGCTAGATTTTTTGACCT-AGAAGCTCTTTGGCGTTTCTCTTCTTTGTATTCTGCCT------TTTTTTTTCTCT-----CTCCTCTAGTTTTCTCTTTTATTTTCCATACATGTGGATAGTCTTCACAGGAAGAATG-TTCATGGATTCTAAGTATGGTTTA----------TAGGTAAAAA s rn3.chr10 18065603 184 - 110733352 TTTACCACCAGTGTGTTTG----CTAGA-TTTTTGACCT-AGAAGCTCT-TAGCATTTCCTTCCTTTGTATTCTGCCTTTT--GTTCTTTTTCTCTATTTCTT----------TCTCTTTTATTTTCCGTAGACGTGGACAGTCTTCAAAGGAAGAATG-TTCATGGATTCTGAGGGTGGTTTATAGGTGGTCATAGGTAAAAA s canFam1.chr9 10735943 184 + 53642819 CTTCCTACTGGTATAGTCA-CTTCTGAGGTTTTCAACCTGAAATGTTCTTTGGCATATTTTTTCTTTGCCATCCACTTAAAAAATTTTTTTTCTCTTTCTCTT----------CCTGCTTTATCATTCAGAGACCTGGGTAGTGCCCAAAGGAAGAATGTTTTACAGATTCTAAGGGTGATTTTA---------TAGGCAAAGG a score=3850.0 s hg17.chr17_random 1156181 27 + 2618010 CAGAAAATGATT------------TTTTTAACCTAAAAG s panTro1.chr19 15546518 27 - 82489036 CAGAAAATGATT------------TTTTTAACCTAAAAG s rn3.chr10 18065787 37 - 110733352 --GAAAAAAATTACATATATATGATTGTGTATGCACATG s canFam1.chr9 10736127 28 + 53642819 CAGAAAATGATT-----------GCTTTTAAACTTCAAG a score=116989.0 s hg17.chr17_random 1156208 285 + 2618010 TTCCATAACAA-AAAATGAATATAAGCTTTTG--ATGCAGTTTCACACATTGAAAATGCAGGTAATTTTAATTTCATTGCATTTTTAT-CAGAATTCTCAATCACAATCCTCTGACAGCTGTTG-AAGATCCGTAGCTCTTGGAACTGCCGGCATTAATATATCTGTAAGTACTATAGTACTCTCATGAG-TCATGAGATGACTTATGCTCTTTT-----AAATTTGTCATCAAAGATTAAGTATTTTGCATTTAGGCTAAAAAGTCA-----TAAATTTTAACTGAGTTATTGAAAAAAG s panTro1.chr19 15546545 287 - 82489036 TTCCATAACAA-AAAATGAATATAAACTTTTG--ATGCAGTTTCACACATTGAAAATGCAGGTAATTTTAATTTCATTGCATTTTTTTTCAGAATTCTCAATCACAATCCTCTGACAGCTGTTG-AAGATCCATAGCTCTTGGAACTGCCGGCATTAATATATCTGTAAGTACTATAGTACTCTCATGAG-TCATGAGATGATTTATGCTCTTTT----TAAATTTGTCATCAAAGATTAAGTATTTTGCATTTAGGCTAAAAAGTCA-----TAAATCTTAACTGAGTTATTGAAAAAAG s mm5.chr11 18510115 270 - 121648857 TTCCATGCTGA-GGGATGGATGTACATTTTTGGAATGGGGTGGAGCAGGTTG-AAGTGTGTGTAATGTGAATCTCACTGCTTTTT----CAGAATCCTCAACCATAACCCTCTGACAGTTGTCG-AAGATCCTTTCCTTTTTAAATTGCCAACATTAAAATATCTGTAAGTAAT------------TGGG-TCCTGGGATGATTTCTGCTCTTTT----TAAATTT-TCATTATGA---GAGTATTTTGCCTTAA---TAAAAAATTGAAATTTTAGTTTCAACTATACTGTTGGAAAAGG s rn3.chr10 18065832 274 - 110733352 TTTCATGCCAATGGAATGAATGTAGACTTTGG-AGTGCTATGAAGCAGATTG--AATTTGTGTAATGTGACTCTCATTGCTTTTC----CAGGATCCTCAACCGTAACCCTCTGACAGTTGTCG-AAGATCCTTTCCTTTTTAAGTTGCCAACGTTAAAATATCTGTAAGTATT------------TGGGTTCCTAGGACGGTCTCTGTTCTTTTTTTTTAAATTT-TCATCAAGA---TAGTATTTTGTCTTAATTTTAAAAAATTA---TTTTAGTTTCAACTCTATTGTTAAAAAAAA s canFam1.chr9 10736155 282 + 53642819 TTCCATACCAAAAAAAAGAACATAAATTTTCA--------TCTAGTTACTTA-AAATGCAGATAATTTTAATTCCATTGCTTTTTT---CAGAATTCTCAGTCATAACCCTCTGACAACTGTTGAAAGATTCATATCTTTTTAAATTGCCAGCATTAAAATATTTGTAAGTATTACAACAATCTCATGGC-TCATGAGATGATTTCTGCTCTTTT-----TTACTT-TTGTCAAAGATTAAATCTTTTGCATTTTGAATAAAAAGTCATAATTTAAATTTTAGCTGGGTTATTGCAATAAG a score=3084.0 s hg17.chr17_random 1156493 11 + 2618010 TTATTGGCAAA s panTro1.chr19 15546832 11 - 82489036 TTATTGGCAAA s canFam1.chr9 10736439 11 + 53642819 TTATTGGCAAA a score=29388.0 s hg17.chr17_random 1156504 169 + 2618010 GAAAAGGATTAAGAAAAGATGTGTAATGGTCAAGACAGCCAGCAGCAGCAG---AGGAAGAGAACCGTGTTGAAAAACCTGTATAGATTTGGAACATGTAG---------------------ACATATGGAGGAATACTACTTAACCAAGAAAGCAAAGAGGAATAGGTGTTCATTATTCTAAAAAGGAAGAA- s panTro1.chr19 15546843 172 - 82489036 GAAAAGGATTAAGAAAAGATGTGTAATGGTCAAGACAGCCAGCAGCAGCAGCAGAGGAAGAGAACCGTGTTGAAAAACCTGTATAGATTTGGAACATGTAG---------------------ACATATGGAGGAATACTACTTAACCAAGAAAGCAAAGAGGAATAGGTGTTCATTATTCTAAAAAGGAAGAA- s mm5.chr11 18512001 144 - 121648857 GAAAAGAATAAAGAAA-------CAACCGGCAAGGCATTCGGCTG---------AGGGTGA-AATAGCGTTGAAGACC----AGAGATGTG---TATGTAA---------------------GCACATGCAGGGCTACCAT----CTCAGAAAGCAAGGAGCCATAAGTGTATACTACTTTTTAAAATAAAAA- s canFam1.chr9 10736450 171 + 53642819 ------------GAAAGAATGTAT-ATGGACAAGACAGCCTGTAG---------TAGAAGAGAGCAGTATTGAAGAACACATAGAGATATGGAACATGCAGGTGTATAGCGAAATATTTACCACATATGTAGAAATATCATTTATCTCAAAAAGCAAACTGGAATAAG-GTATACCTTATTTAAAACAAAAGAC a score=0.0 s hg17.chr17_random 1156673 9 + 2618010 AAGAGTAAA a score=273.0 s hg17.chr17_random 1156673 1 + 2618010 A s panTro1.chr19 15547015 1 - 82489036 A s mm5.chr11 18512145 1 - 121648857 A a score=1128.0 s hg17.chr17_random 1156674 8 + 2618010 ------AGAGTAAA s panTro1.chr19 15547016 8 - 82489036 ------AGAGTAAA s mm5.chr11 18394792 14 - 121648857 AAATGTAAAGTAGG a score=9131.0 s hg17.chr17_random 1156682 99 + 2618010 TAATCAAAATGGGTGAATGCAATATG--------AAATGAGAAGA-TAATGGTA-----------------AAAAATAA-GTGTAAGTTCTACTCTTAAGTATCATTAAATTTGATGATGCAGATC s panTro1.chr19 15547024 100 - 82489036 TAATCAAAATGGGCGAATGCAATATG--------AAATGAGAAGA-TAATGGTA-----------------AAAAAAAAAGTGTAAGTTCTACTCTTAAATATCATTAAATTTGATGATGCAGATC s mm5.chr11 18394806 115 - 121648857 TAGTTATG--GAGTAAAGGCAATATGAGAATGATAAATAAGAAGATTAATTGTGTTCAGTGCCAGCCCATTGAGTGGATGGCATAAGTAGTAACCTTAGGTATAGTTAACTCTGTAG--------- s canFam1.chr9 10736621 99 + 53642819 TAATCAAGAAAGGTGGATGCAACTGA--------GAATGAGTAGA-AAAAGGGT-----------------AAAAGGAGATTGTACTGTTTAGCACCAAG-GTGATTTATGTTCGTGATGCACATA a score=6907.0 s hg17.chr17_random 1156781 27 + 2618010 AACTTAAATTTCTTTAATAAGAGCTCT s panTro1.chr19 15547124 27 - 82489036 AACTTAAATTTATTTAATAAGAGCTCT s mm5.chr11 18394921 22 - 121648857 -----AAGTTCTTCTAGGACAGGCTTC s rn3.chr10 18067573 27 - 110733352 AACACAGACATATTCAACGCGGGCCCT s canFam1.chr9 10736720 27 + 53642819 AATTTTAATTTCTTCAATAAGAATGCT a score=1104.0 s hg17.chr17_random 1156808 3 + 2618010 CTG s panTro1.chr19 15547151 3 - 82489036 CTG s mm5.chr11 18394943 3 - 121648857 CTT s canFam1.chr9 10736747 3 + 53642819 CTG a score=351.0 s hg17.chr17_random 1156808 5 + 2618010 CTGGA s canFam1.chr9 10736747 5 + 53642819 CTGAA a score=311.0 s hg17.chr17_random 1156811 2 + 2618010 GA s panTro1.chr19 15547154 2 - 82489036 GA s canFam1.chr9 10736750 2 + 53642819 AA a score=1796.0 s hg17.chr17_random 1156813 11 + 2618010 -----ATTTTACAGCA s panTro1.chr19 15547156 11 - 82489036 -----ATTTTACAGCA s rn3.chr10 18067600 11 - 110733352 -----GCCTTAAAGGA s canFam1.chr9 10736752 16 + 53642819 ATTATCTTCCATAGCA a score=70947.0 s hg17.chr17_random 1156824 246 + 2618010 AATAA-ACTGTTGAACTGGCTTGTTTTAT------------------AGAGAAGCC-------------AAAATTGAAGTAGTCACATG------------------------------TCCTTGAAAT-ATCTTTT-----TAAGGACAGA-ATTTTGGTATTGGGCTTCATATC----------ATGAATG----------------------------------TTTCGGCTTTCTTCTTCAGATACATGGGAACAACACAAGTCCCACTTACAACAATTAAGAACATTCTCAGGATGACTGTTGAATTGGAAAAACTGTAAGTTATTTTTTTCTTAGATTTATTTTTACTTAGTT s panTro1.chr19 15547167 246 - 82489036 AATAA-ACTGTTGAACTGGCTTGTTTTAT------------------AGAGAAGCC-------------AAAATTGAAGTAGTCACATG------------------------------TCCTTGAAAT-ATCTTTT-----TAAGTACAGA-ATTTTGGTATTGGGCTTCATATC----------ATGAATG----------------------------------TTTCGGCTTTCTTCTTCAGATACATGGGAACAACACAAGTCCCACTTACAACAATTAAGAACATTCTCAGGATGACTGTTGAATTGGAAAAACTGTAAGTTATTTTTTTCTTAGATTTATTTTTACTTAGTT s mm5.chr11 18513206 208 - 121648857 AGTGA-ATTCTTGAGCCAGTTAGTTTTAT------------------AGGAAAGCT-------------GAAGGTTGAGTCAGCGTGTG------------------------------AC---GAAAT------------------------------------GGTTCC---TC----------ATGAA------------------------------------GTCTGGCTTTCTCCTTCAGGGACCTGGGGGCCACACAGGTGCAACTGACAATGGTTGAGAACATCCTCATGATGATGCTGGAGCTGGAACATCTGTAAGGT-TTATCTTCTTAGAGTAATCTCGATTTGGTT s rn3.chr10 18067618 349 - 110733352 AGTAAGAGTTTTG----GTTTTGTTTTCTGTCATGACTAGACAGTCCAGAACAGACCACCAGCTACTAAAGAGTTACAAAAGTTACAAGAAAAGGCAAACTTCTCTTTTCCAAAGGAGCTCCGTGAAATAATCTTTT-----GTGGCAAAGAGATTTTATTTTTATTGTTTACCTCTGTTATGTGTCTGAATGCTAATACACGTGTGGTGAGACGGTTCCTCATGTAGTCCGGCTTTCTCCTTCAGGGACCTGGGGGCCACACAGGTGCAACTGACAACAGTTGAGAACATCCTCATGATGACTCTGGAGCTGGAACATCTGTAAGGT-TTATCTTCTTAGAATAATTTCACTTTGGTT s canFam1.chr9 10736768 241 + 53642819 AGTAAAACTCTTGAGCTAGCTTG----AC------------------AGAGAAGCC-------------AGAATTTAAATAATCACATA-------------------------------CTATTAAGT-ACCTTTTTGTACTTGGTGTGAA-ATTTTAGTCTTTGG-----TATC----------ATGCATG----------------------------------TTTGGGCGTTCTCTTTCAGAGACATGGGAACAACACAGGTGTCACTTTCAACAATTGAGAGCATTCTCATGATGACCCTTGAATTGGAAAAACTGTAAGTT-GATTTTTCTTATGTTTATTATCACTTCGTT a score=22099.0 s hg17.chr17_random 1157070 90 + 2618010 GGTTT-TTT-AGGTTTGT------TTTATTA-TTTTCTTAAGTCAGGtttattgagatataattttcacataac--attcaccctttataagtgtatagtt s panTro1.chr19 15547413 90 - 82489036 GGTTT-TTT-AGGTTTGT------TTTATTA-TTTTCTTAAGTCAGGtttattgagatataattttcacataac--attcaccctttataagtgtatagtt s mm5.chr11 18395159 76 - 121648857 --TGC-TTT-ATGCTAGTTTTTTGTTTATTATTTTTCTGAAGTCAAGATTATTGATGTATAATTTTCATGCAA---------------------TTCAGTT s rn3.chr10 18068190 80 - 110733352 GATGT-TTTGAGGTTTGC------CTT-----ATTTCTTGAGTCTGAGTTACTGGGGTATGATTTTCATGCAATAAATTC---------AAGCACATGGGT s canFam1.chr9 10737009 85 + 53642819 -GTGTATTT-AGGTTTGT------TT------TATTTATAAGACAGCtttattgaggcataattttcagttaat--atgtactctttttaagtatgcagtt a score=1146.0 s hg17.chr17_random 1157160 2 + 2618010 tg s panTro1.chr19 15547503 2 - 82489036 tg s mm5.chr11 18395235 2 - 121648857 TG s rn3.chr10 18068270 2 - 110733352 TG a score=575.0 s hg17.chr17_random 1157162 3 + 2618010 att s panTro1.chr19 15547505 3 - 82489036 att s rn3.chr10 18068272 3 - 110733352 ATC a score=27430.0 s hg17.chr17_random 1157165 306 + 2618010 agtgtt----tttgtttgggtttttttgagatggcgtctcactctgtcacccaggctggagtgcagtggcgcaatcttggctcactgcaagctccgcctcctgggttcacgccattctcttgcctcagcctcccgagtagctgggtctacaggtgtccaccaccacacccggctaattttttgtatttttagtggagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccacgcccggcgct s panTro1.chr19 15547508 310 - 82489036 agtgtttttgtttgtttgggtttttttgagatggcgtctcactctgtcgcccaggctggagtgcagtggcgcgatcttggctcactgcaagctccgcctcctgggttcacgccattctcttgcctcagcctcccgagtagctgggtctacaggtgcccaccaccacgcctggctaattttttgtatttttagtggagacggggtttcaccgtgttagccaggatggtctcgatgtcctgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggcgtgagccaccacgcccggccct a score=191.0 s hg17.chr17_random 1157471 2 + 2618010 ag s panTro1.chr19 15547818 2 - 82489036 ag a score=1703.0 s hg17.chr17_random 1157473 7 + 2618010 tttgatg s panTro1.chr19 15547820 7 - 82489036 tttgatg s canFam1.chr9 10737094 7 + 53642819 tttaatg a score=11139.0 s hg17.chr17_random 1157480 60 + 2618010 agttttgacaaatgtatagttacataaccaccaccacattcccaatata-------aagcatttctg s panTro1.chr19 15547827 60 - 82489036 agttttgacaaatgtatagttacataaccaccaccacattcccaatata-------aagcatttctg s mm5.chr11 18395237 59 - 121648857 AGTT--------TACATAGTCATCTAACCACTACTACACAGCTTAGACAACCTTGCAAACTCTTTCA s rn3.chr10 18068275 45 - 110733352 AGTT--------TTCACAGTTA---GTCCCCTA--ACATTACTGGTGTA-------GACTGCTT--G s canFam1.chr9 10737101 60 + 53642819 agctttggtaaatatatagttgtgtaaccaccaccatgtttgagataca-------gaacatttctg a score=0.0 s hg17.chr17_random 1157540 27 + 2618010 tcacctcaaaaaggcccctcgtgtccc a score=4520.0 s hg17.chr17_random 1157540 14 + 2618010 tcacctcaaaaagg s panTro1.chr19 15547887 14 - 82489036 tcacctcaaaaagg s mm5.chr11 18395296 14 - 121648857 CCCCCCCCAAAAGG s rn3.chr10 18068320 14 - 110733352 TCACGTCCCAAAGG a score=5704.0 s hg17.chr17_random 1157554 13 + 2618010 cccctcgtgtccc s panTro1.chr19 15547901 13 - 82489036 cccctcgtgtccc s mm5.chr11 18395495 13 - 121648857 CCCCTCATGTACC s rn3.chr10 18068334 13 - 110733352 CCCCTCCTGCCCC a score=16142.0 s hg17.chr17_random 1157567 78 + 2618010 tttgtaggcaatcccctcctcccaccatcagcccct-gttagctactaatctgatttctgttcctatagttttgcgttt----------------- s panTro1.chr19 15547914 78 - 82489036 tttgtaggcaatcccctcctcccaccatcagcccct-gttagctactaatctgatttctgttcctatagttttacgctt----------------- s mm5.chr11 18395508 71 - 121648857 TTTGCCCTCAG-CCACTCCTC------TCAGCCCTTAATCCATTACTAGTCTTATTTATGAGCCTATA-TTTTCCCTTT----------------- s rn3.chr10 18068347 56 - 110733352 TTTGCA---------------------CCAGCCCAGGGTT--CCACAACCCTTATTTCTAGCCCTATAGTTTTCCCTCT----------------- s canFam1.chr9 10737161 95 + 53642819 tttgtagttaatcccctgttgccactatcagcccct-gacagccatcaacctcatttttgtccctatagtattttttccaccatgtcTTTTTTTTt a score=29452.0 s hg17.chr17_random 1157645 57 + 2618010 ttcagaatgtcttataaatgaaatcatgtagcatgtagcctcttgtgtttggcttct s panTro1.chr19 15547992 57 - 82489036 ttcagaatgtcttataaatgaaatcatgtagcatgtagcctcttgtgtttggcttct s mm5.chr11 18395579 57 - 121648857 TCCAGAACATCTCATAAATGACATCCCATAATTTGTGACCTTTTGGGTCTGTCTTCT s rn3.chr10 18068403 57 - 110733352 CCTAGAACATCTCACAAATGACATCCCATGGCATATGGCCTTTTGGATCTGCCTTCT s canFam1.chr9 10737431 57 + 53642819 TCTACCGtgtcttatgaatgaaatcatacagtatgcagtcttgtgtgattggctcct a score=2652.0 s hg17.chr17_random 1157702 6 + 2618010 ttcact s panTro1.chr19 15548049 6 - 82489036 ttcact s mm5.chr11 18395636 6 - 121648857 TTCACT s rn3.chr10 18068460 6 - 110733352 CCCACT a score=302.0 s hg17.chr17_random 1157708 2 + 2618010 ta s panTro1.chr19 15548055 2 - 82489036 ta s mm5.chr11 18395642 2 - 121648857 CA a score=28271.0 s hg17.chr17_random 1157710 314 + 2618010 gtactgctttttttttttttttttttttttttataagatggagtctcactgtcacccaggctgcagtgcagcggcgtgacctcagctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcgtgtgccaccacgcccagcaaatttttgtacttttagtggagacgaagtttcaccatgttggccagactggtttcgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgttaggattacaggtgtgagccaccttacccagcc s panTro1.chr19 15548057 306 - 82489036 gtactgctttttttttttttttttt--------tgagatggagtctcactgtcacccaggctgcagtgcagcggcgtgacctcggctcactgcaacctccacctcccaggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcgtgtgccaccacgcccagcaaatttttgtacttttagtggagacgaagtttcaccatgttggccagactggtttcgaactcctgacctcaagtgatccgcccacctcggcctcccaaagtgttaggattacaggtgtgagccaccttgcccagcc a score=10187.0 s hg17.chr17_random 1158024 92 + 2618010 tcacttagcataatttttttgagattatgctaccatccatgttgttgca------------------cctccatatctgcaggttcctcatccatggattcaactaacaa s panTro1.chr19 15548363 110 - 82489036 tcacttagcataatttttttgagattatgctaccatccatgttgttgcacctatccctacagctagccctccatatctgcaggttcctcatccatggattcaactaacaa s canFam1.chr9 10737489 53 + 53642819 tgactcagcataatccttttgagatt-------catccatgtgattgca--------------------------------------------------tcaacccgtaa a score=23630.0 s hg17.chr17_random 1158116 253 + 2618010 tggatggagaatatttgggaaaaaataaaaatatgtaaaataataatacaacaataaaaacaatagaaaatttatggtataattatttacataccatttacactgtattaggtatttaaagtatacccgaggcttatgtcatttattatatcaagtattatgtcatttcatataaaagacttcagcatctgtggactttggtatccgcagggggtcctggagccaatcccctgcagacaccgaaggacaactg s panTro1.chr19 15548473 253 - 82489036 tggatggagaatatttgggaaaaaataaaaatatgtaaaataataatacaacaataaaaacaatagaaaatttatggtataattatttacataccatttacactgtattaggtatttaaagtatacccgaggcttatgtcatttattatatcaagtattatgtcatttcatataaaagacttcagcatctgtggactttggtatctgcagggggtcctggagccaatcccctgcagacaccgaaggacaactg a score=44176.0 s hg17.chr17_random 1158369 233 + 2618010 ttcactcctttttattgctcagtagtatttcagttgtgtggacgtatcaatgtgtttatccattcatcaatgtatggacatttgggtagcttccagt----ttttggcaattttgaataaaacttctaaaaacactcatatacaggtctttgtgtgaacctatgttttcatttctttggg----taaatacc-aggagttggatggt----tcacatgcttagtgtatatttaactttttaagaaa s panTro1.chr19 15548726 234 - 82489036 ttcactcctttttattgctcagtagtatttcacttgtgtggacgtattaatgtgtttatccattcatcaatgtatggacatttgggtagcttccagt----ttttggcaattatgaataaaacttctaaaaacactcatatacaggtctttgtgtgaacctatgttttcatttctttggg----taaatacctaggagttggattgt----tcacatgcttagtgtatatttaactttttaagaaa s canFam1.chr9 10737542 245 + 53642819 ttcactcctttttattactgagtagtgttacagttgtgtggatatatcagtttgtttatgcattcatcacttaatggacatttgagttgttctgattttccttttggctatgatgaataaagctgctaaaagcagtcacgtgcaggcctttgtgtgagcatatgctttca-ttctgggggaggtgaaatacttaatggtaggattactacatcatgtgctaagtgtatatttaactttttaagaaa a score=5728.0 s hg17.chr17_random 1158602 28 + 2618010 ctgctaaactgtttcctaaagtggctgt s panTro1.chr19 15548960 28 - 82489036 ctgctaaactgtttcctaaagtggctgt s canFam1.chr9 10738030 28 + 53642819 CTGCTTACCTCTTTTCTAAAGTGAATGT a score=40410.0 s hg17.chr17_random 1158630 483 + 2618010 gccattttacatttccaccagcattgtatgagagtcacagttattccacatcttcagcatttttttttttttttttttttttttttttttttggcgacacagtcttgctctgtccccaggctggagtgcagtggtgccatcttggctcactgcaacctctacctcctgagttcaaacagttctcctgcctcagcctcccaaatagctataggcacctgccaccacacccagctaatttttgtatttttagtagagacgggctttcaccatgttcgccaggctggtcttgaactcctgacttcatttgatccacctgcctagcctcccaaagtgctggaattataggcgtgagccaccatgcctggccCAGCAGAtttttcttttttttttttt-----ttctgagacagagtcattgctggagtgcagcagcaagatctcagctgacagcaacctctgcctaccaggttcaagcgattctcctccctc s panTro1.chr19 15548988 471 - 82489036 gccattttacatttccaccagcattgtatgagagtcacagttgttccacatcttcAGCA-----------------ttttttttttttttttggcaacacagtcttgctctgtccccaggctggagtgcagtggtgccatcttggcttactgcaacctctacctcctgagttcaaacagttctcctgcctcagcctcccaagtagctataggcacctgccaccacacccagctaatttttgtatttttagtagagacgggctttcaccatgctcgccaggctggtcttgaactcctgacttcatttgatccacctgcctagcctcccaaagtgctggaattataggcgtgagccaccatgcctggccCAGCAGAAtttttttttttttttgtttgtccttctgaaacagagcccttgctggagggcaacagcaaaatctcagctgacagcaacctctgcccaccaggtgcaagcgattctcccccctc a score=3269.0 s hg17.chr17_random 1159371 141 + 2618010 cattctggttttaatttgcatttctttaatagctagtgatatacaa----tattcatgtgcaaatatctttactaaattgttcaaatctattcgcatattttaattggatattaatatttttattgaggtttttttccctgtaat s canFam1.chr9 10738528 109 + 53642819 CTTtgtatctttaatttgcatttctctaatagctcatgatgttgagtgtctattcatgtaccaatatct-----------------------------ttttaaatg-------atgtgtctattgaaatctcttttccttttat a score=781.0 s hg17.chr17_random 1159512 35 + 2618010 cccgtgagacattcgtcat----------------tattgagttttaagag s canFam1.chr9 10738855 46 + 53642819 C-----AAAGATCCATCATTCAGTTGGATACAtactattgagttttaagag a score=16074.0 s hg17.chr17_random 1159663 206 + 2618010 gtctccagtaaatataaaaaaaaaaaaaaaaaaaattagccgggcatagtggcgggcacctatagtcccagctactcgggaggctgaggtaggagaatggcgtgaaccgagggggcggagcttgcagtgagcagagatcacgccactgcactccagcctgggcgacagagtgagactccgtctaaaaaaaaaaaaaaaaaaaa-----gac s panTro1.chr19 15550009 206 - 82489036 gtctccagtaaacatataaaaaaaaaaaat-----ttagccgggcatagtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaagggcgtgaacccagggggcggagcttgaagtgagcagagatcacgccactgcactccagcctgggcgacagagtgtgactccgtttaaaaaaaaaaaaaaaaaaaaaaaaagag a score=5184.0 s hg17.chr17_random 1159869 31 + 2618010 tgctttatagattctagatacaagtcttttc s panTro1.chr19 15550215 31 - 82489036 tgctttatagattctagatacaagtctttac s canFam1.chr9 10738901 30 + 53642819 tatattatatattctgga-aaaagtcttttc a score=30295.0 s hg17.chr17_random 1159900 322 + 2618010 agggactaggtacagtagctcatgcctataatcccagcacattgggaggctgaggcaggaggactgcttgaggccaggagttttagaccacctgggcaatatggtaaaaccttgtctctaccaaaaatataaaaattagccaggtgtggtggtgctcacctgtggtcccagctacttgggaaactgaggtgggaggattgcttgagcctgggaggtcgaggctgcagtgagctatgatcaccactgcagtccagcctgggtcacagagtgagatgctatctcaaaaattaaatacgtaaataaataaaaacaaaaaacaagg s panTro1.chr19 15550246 322 - 82489036 agggactaggtacagtagctcatgcctataatcccagcacattgggaggctgaggcaggaggactgcttgaggccaggagttttagaccacttgggcaatatggtaaaaccttgtctctaccaaaaatataaaaattagccaggtgtggtggtgctcacctgtggtcccagctacttgggaaactgaggtgggaggattgcttgagcctgggaggtcgaggctgcagtgagctatgattgccactgcagtccagcctgggtcacagagtgagatgctatctcaaaaattaaatacgtaaataaataaaaacaaaaaacaagg a score=9692.0 s hg17.chr17_random 1160222 66 + 2618010 ccttatagatatgtgtttggtaaatatcttctctctggttgtggtttgtcttttcattctgttaaa s panTro1.chr19 15550568 66 - 82489036 ccttatagatatgtgtttggtaaatatcttctctccagttgtggtttgtcttttcattctgttaaa s canFam1.chr9 10738931 55 + 53642819 tct------caggtgtttagcaaat---ttctcccaggctgtggcttgtc--ttcattctgttcta a score=28940.0 s hg17.chr17_random 1160288 314 + 2618010 agtgttttctggctggacacagtgactcacacctctaatcccagcactttgggaggccaaggcaggtggatcacttgaagtaaggagttcgagatcagcctggccaacgtggcaaaacccccatctctactaaaaatacacaagttagccaggtgtggtggcccacgcctgtaatcccagctactccagaggctgaggcacaagaagtgcttgaacctgggaggtggaggttgcactgagatgtgactgcaccactgcactccagcctgggtgacacagtgagactctgtctcaataaataaataaataaatgt s panTro1.chr19 15550634 314 - 82489036 agtgttttctggctggacacagtgactcacacctctaatcccagcaccttgggaggccaaggcgggtggatcacttgaagtaaggagtttgagatcagcctggccaacgtggcaaaacccccatctctactaaaaatacacaagttagccaggtgtggtggcccacgcctgtaatcccagctactccagaggctgaggcacaagaagtgcttgaacctgggaggtggaggttgcaatgagatgtgattgcaccactgcactctagcctgggtgacacagtgagactctgtctcaaaaaataaataaataaatgt a score=5844.0 s hg17.chr17_random 1160602 28 + 2618010 tttctgaagagcagacgtttttaatttt s panTro1.chr19 15550948 28 - 82489036 tttctgaagagcagacgtttttaatttt s canFam1.chr9 10738986 27 + 53642819 tctctgaagaccaga-atttttaatttt a score=66609.0 s hg17.chr17_random 1160630 754 + 2618010 gatcagctttaagttagcaattttttcttatatggcttgtgcttttttgtttcttacctaaagaaatctttaagaacctgttgtttaatccaaagtagaaaagatttactctctatgtcttctcccagaaattgtatagttacatcatttaggtctatgatccattttgagttaattta----tatggtgtgagt--ttttttttttttttcaattttattttttggagaaacgaggtctcactgtgttgcccaggctggtttcaaactcctggcttcaagtgatccccctgcctcattctcccagagtgctgggattacaggcatgaggcaccatgcctggccTTCTTTGTAGATGTAGCtatagatatatatgtatctatatatatatatatatctatatCttcgccaagtgtggtggcacatgcctgtagtcccagcactctgggagaatgaggcaggaggattgcttgaatccaagaggtagaggttgcagtgagccaagatggcaccactgcactccagcctgggtgacagagcaagaccctgtctaaaaaaaaaaaaaatatatatatatatatatatgtatTTCTCCAGGGCCCTATTGGGAGTTTGTTACACAACTTACTGCAACTTAAATTGTGCCACCACCACCCCCATCCCCCCACAATATGCAAGCTAAATAGAAACTCAGTTATGCTAAGGCTGGTTGAGGGCATTATACAAGATTAGCCCTTCATTTAGTACTCTGCTCCATTCAT s panTro1.chr19 15550976 752 - 82489036 gatcagctttaagttagcaattttttcttatatggcttgtgcttttttgtttcttacctaaagaaatctttaagaacctgttgtttaatccaaagtagaaaagatttactctctatgtcttctcccagaaattgtatagttacatcatttaggtctatgatccattttgagctaatttacatatatggtgtgaggGGTtttttttttttttca-ttttattttttggagaaacgaggtctcactgtgttgcccaggctggtttcaaactcctggcttca-gtgatccccctgcctcattctcc-agagtgctgggattacaggcatgaggcaccatgcctggcCTTCTTTGTAGATGTAGCtatagatatatatgtatctatctatatatatatatctatatCTTCgccaggtgtggtggcacatgcctgtagtcccagcactctgggagaatgaggcaggaggattgcttgaatccaagaggtagaggttgcagtgagccaagatggcaccactgcactccagcctgggtgacagagcaagaccctttctaaaaaaaaa-----TACATATATATATATATATGTATTTCTCCAGGGCCCTATTGGGAGTTTGTTACACAACTTACTGCAACTTAAATTGTGCCACCACCACCCCCATCCCCCCACAATATGCAAGCTAAATAGAAACTCAGTTATGCTAAGGCTGGTTGAGGGCATTATACAAGATTAGCCCTTCATTTAGTACTCTGCTCCATTTAT a score=10070.0 s hg17.chr17_random 1161384 69 + 2618010 TTTTGTCAGGTCACTTTCTTACCTTCACCACGTTGTTAGATCTGTTTTACTGCTCTAGGCTCACTTTCC s panTro1.chr19 15551728 69 - 82489036 TTTTGTCAGGTCACTTTCTTACCTTCACCACGTTGTTAGATCTGTTTTACTGCTCTAGGCTCACTTTCC s fr1.chrUn 291034321 69 + 349519338 TTTTGTCAAGTGTTGTTCTAATCTTTGCAGTATAAATAAGTTCTCCCACCTCTTCCAGGTTCACTTTCC a score=40554.0 s hg17.chr17_random 1161453 436 + 2618010 TCAGCCTCCTGCAGCATCTTTCTGTCAGCTAGATCCCTTCCTCTCTGGATGAAGTCCTCTTCACTGACCAGCTTTCTCACTTAGTTCTCTAAGATAGTGAGGATCTGTCTGCTTTTTTCTTGACCATTAGTGTATAGGAAAAATGCTCTCATTGTCTGTAACCATTTGTCGCCAAGGCCATAAAGACATTGAACTAATTGCCTTATTGGAGTTCATTATTGGAAGTCTTCAGGAGTTTACACATTTATATACAAAGTAAGTAGACCAGCTCATTTGTCTTAGCTCATGTGTAATGATCTTTAATGCATATTGAAAAATTACTATTCTCAAGTAAAGATAATGTATACCTCAGGTCATTTACAGTCTCAAAGGTTTGTCAGTATGCTTTTAAACAATCCTGGGAACAGATCTAGATTGAAGGAGACTAAAGAATCAT s panTro1.chr19 15551797 436 - 82489036 TCAGCCTCCTGCAGCATCTTTCTGTCAGCTAGATCCCTTCCTCTCTGGATGAAGTCCTCTTCACCGACCAGCTTTCTCACTTAGTTCTCTAAGATAGCGATGATCTGTCTGCTTTTTTCTTGACCATTAGTGTATAGGAAAAATGCTCTCATTGTCTGTAACCATTTGTCGCCAAGGCCATAAAGACATTGAACTAATTGCCTTATTGGAGTTCATTATTGGAAGTCTTCAGGAGTTTACACATTTATATACAAAGTAAGTAGACCAGCTCATTTGTCTTAGCTCATGTGTAATGATCTTTAATGCATATTGAAAAATTACTATTCTCAAGTAAAGACAATGTATACCTCAGGTCATTTACAGTCTCAAAGGTTTGTCAGTATGCTTTTAAACAATCCTGGGAACAGATCTAGATTGAAGGAGACTAAAGAATCAT a score=687.0 s hg17.chr17_random 1161889 5 + 2618010 GAACT s panTro1.chr19 15552233 5 - 82489036 GAACT s canFam1.chr20 58104884 5 + 61172541 gggcc a score=14469.0 s hg17.chr17_random 1161894 40 + 2618010 CGAggcggcgccggggc--gggcgccgAGCTGGCAAGCGGG--T s panTro1.chr19 15552238 40 - 82489036 TGAGGCGGCGCCGGGAC--GGGCGCCGAGCTGGCAAGCGGG--T s mm5.chr17 39243848 44 - 93559791 CGAGGTGGCTTCGGGGCGGGGGCGCAGAGCTGGCAAGCTGATTT s canFam1.chr20 58104889 40 + 61172541 tgaggcggcgccggggc--gggcgcggAGCTGGCGAGAGCG--C a score=14282.0 s hg17.chr17_random 1161934 91 + 2618010 GGTGGAGGCGGTGCTGATGGGGGCCGCTGAGGCGCGCAGAGGGTT-GGTGGTGCC--CGGGAGCCTGTCGCTGGCGGGG----TCTGGGCAGG---GGGGT----- s panTro1.chr19 15552278 91 - 82489036 GGTGGAGGCGGTGCTGATGGGGGCCGCTGAGGCGCGCAGAGGGTT-GGTGGTGCC--CGGGAGCCTGTCGCTGGCGGGG----TCTGGGCAGG---GGGGT----- s mm5.chr17 39243892 69 - 93559791 GGCGGTGGCGGCGCCGACCTGCG-CGCGGAGGAAAGAAGTCGGTTCGGCGGCGCCGGCGGAAACC-------------------------------GGAGT----- s canFam1.chr20 58104929 95 + 61172541 GGTGGAGGCAGCGCCGACGGGGCCCGCTGAGGCGCGCGGGGTATC-GGCGGCGCC--CGGGAGCCTGTCGCTTGCGCGGTCCCTCCGGTTCGC---TGGGT----- s fr1.chrUn 133660433 82 - 349519338 GGTTGGGGCGGAAATAACGGAAGTCTCTCCG---------------GCCGCTGCT--TTGCCGCCATTTGTGAGCG-------TCCAGGTCGGGACGGGGTCTTTT a score=2439.0 s hg17.chr17_random 1162025 14 + 2618010 CTGGGCGGAAGGTT s panTro1.chr19 15552369 14 - 82489036 CTGGGCGGAAGGTT s canFam1.chr20 58105024 14 + 61172541 CCGGGCGGGAGCCC s fr1.chrUn 133660515 14 - 349519338 CTCGGCGTGTTTTG a score=10301.0 s hg17.chr17_random 1162039 58 + 2618010 ---CCGCGGCAGGAGGCAGCATGTCGGTTGCCGGGCTGAAGAAGCAGTTCTACAAGGCGAG s panTro1.chr19 15552383 58 - 82489036 ---CCGCGGCAGGAGGCAGCATGTCGGTTGCCGGGCTGAAGAAGCAGTTCTACAAGGCGAG s fr1.chrUn 133660529 58 - 349519338 TCTCCGCAGCCGCAG---TGATGTCTGTCGCGGGGCTGAAGAAGCAGTTCCATAAAGCCAC a score=-14.0 s hg17.chr17_random 1162096 2 + 2618010 GC s danRer1.chr9 4769311 2 + 28422069 GA a score=100.0 s hg17.chr17_random 1162097 1 + 2618010 C s fr1.chrUn 195930290 1 + 349519338 C a score=100.0 s hg17.chr17_random 1162097 1 + 2618010 C s canFam1.chr20 58131202 1 + 61172541 C a score=100.0 s hg17.chr17_random 1162097 1 + 2618010 C s panTro1.chr19 15552441 1 - 82489036 C a score=92077.0 s hg17.chr17_random 1162098 62 + 2618010 CAACTGGTCAGTGAGAAGGTCGGAGGGGCTGAGGGGACCAAGCTGGATGATGACTTCGAAGA s panTro1.chr19 15552442 62 - 82489036 CAACTGGTCAGTGAGAAGGTCGGAGGGGCTGAGGGGACCAAGCTGGATGATGACTTCAAAGA s mm5.chr17 39260258 62 - 93559791 CAGCTGGTCAGCGAGAAGGTTGGTGGGGCCGAAGGGACCAAACTGGATGATGACTTTAAAGA s canFam1.chr20 58131203 62 + 61172541 CAGCTGGTCAGTGAGAAGGTCGGAGGGGCTGAAGGGACCAAGCTTGATGAAGACTTCAAAGA s galGal2.chr28 3346450 62 - 4731479 CAGCTGGTCAGCGAAAAGGTTGGAGGGGCAGAAGGGACCAAACTTGACGATGACTTCAAGGA s fr1.chrUn 195930291 62 + 349519338 TAGATGGTGAGTGAAAAGGTCGGAGGGGCTGAAGGAACTAAACTCGATGATGACTTCAGAGA s danRer1.chr9 4769313 62 + 28422069 CAGATGGTGAGTGAAAAGGTCGGTGGCGCTGAGGGAACTAAACTGGACGAGGAGTTCAAGGA a score=-1948.0 s hg17.chr17_random 1162160 2 + 2618010 --GA s panTro1.chr19 15552504 2 - 82489036 --GA s mm5.chr17 39260320 2 - 93559791 --TA s canFam1.chr20 58131265 2 + 61172541 --GA s galGal2.chr28 3346512 2 - 4731479 --AA s danRer1.chr9 4769375 2 + 28422069 CC-- a score=4827.0 s hg17.chr17_random 1162162 3 + 2618010 TGG s panTro1.chr19 15552506 3 - 82489036 TGG s mm5.chr17 39260322 3 - 93559791 TGG s canFam1.chr20 58131267 3 + 61172541 TGG s galGal2.chr28 3346514 3 - 4731479 TGG s fr1.chrUn 195930674 3 + 349519338 TGT s danRer1.chr9 4769377 3 + 28422069 TGG a score=82110.0 s hg17.chr17_random 1162165 71 + 2618010 AGAAG---GTGGATGTCATCAGCAAGGCGGTGACGTAAGTACTGTCCAGGACCATCGAGTACCCGCAGCCCAAC s panTro1.chr19 15552509 74 - 82489036 AGAAGAAGGTGGATGTCATCAGCAAGGCGGTGACCTAAGTGCTGGCCAGGACCATCGAGTACCCGCAGCCCAAC s mm5.chr17 39260452 71 - 93559791 AGAAG---GTGGATGTCACCAGCAAGGCCGTGGCAGAGGTGCTGGTCAGAACCATAGAATATCTGCAGCCTAAC s canFam1.chr20 58131522 71 + 61172541 AGAAG---GTGGATGTTACCAGCAAGGCTGTGACAGAAGTGCTGGCCAGAACCATTGAGTACCTGCAGCCCAAC s galGal2.chr28 3346631 71 - 4731479 AGAAA---GTGGATTTGACCAGCAAGGCAGTTACAGAAGTATTGACCAGAACAATAGAATACCTGCAGCCAAAC s fr1.chrUn 195930677 71 + 349519338 AGAAA---GTGGAGGTGACCAGTAAAGCGGTGGTGGAAGTCATCTCTAAGACCTCCGAGTACCTTCAGCCAAAC s danRer1.chr9 4772823 71 + 28422069 AGAAA---GTAGATGTGACAAATAAAGCTGTGGTAGAAGTGATCTCTAAAACGTCAGAGTACCTGCAGCCCAAT a score=100.0 s hg17.chr17_random 1162236 1 + 2618010 C s danRer1.chr9 4772894 1 + 28422069 C a score=600.0 s hg17.chr17_random 1162236 1 + 2618010 C s panTro1.chr19 15552583 1 - 82489036 C s mm5.chr17 39260523 1 - 93559791 C s canFam1.chr20 58131593 1 + 61172541 C a score=100.0 s hg17.chr17_random 1162236 1 + 2618010 C s galGal2.chr28 3347448 1 - 4731479 C a score=100.0 s hg17.chr17_random 1162236 1 + 2618010 C s fr1.chrUn 195930748 1 + 349519338 C a score=179121.0 s hg17.chr17_random 1162237 145 + 2618010 CAGCCTCGCAGGCTAAACTGACCATGCTCAACACCGCGTGCAAGATCCGGGGCCAGGTGAAGAACCCCGGCTACCTGCAGTCAGGGGGGCTCCTGGGCGAGTGCCTGATCCGCCATGGGAAGGAGCTGCGCGACGAGTCCAACTT s panTro1.chr19 15552584 145 - 82489036 CAGCCTCGCAGGCTAAACTGACCATGCACAACACAGCGTGCAAGATCCGGGGCCAGGTGAAGAACCCCGGCTACCTGCAGTCAGGGGGGCTCCTGGGCGAGTGCCTGATCCGCCATGGGAAGGAGCTGCGCGACGAGTCCAACTT s mm5.chr17 39260990 145 - 93559791 CAGCCTCGAGAGCCAAGCTGACTATGCTGAACACCGTATCCAAGATCCGGGGCCAAGTGAAGAACCCTGGCTACCCACAGTCAGAGGGTCTGTTGGGAGAGTGCATGGTTCGCCATGGCAAGGAACTAGGTGGAGAGTCCAACTT s canFam1.chr20 58132469 145 + 61172541 CAGCTTCACGGGCCAAACTGACAATGCTCAACACGGTGTCCAAAATCCGAGGGCAAGTGAAGAACCCTGGCTACCCGCAGTCAGAGGGCCTGCTGGGCGAGTGCATGATCCGCCACGGGAAGGAGCTGGGCGGCGAGTCCAACTT s galGal2.chr28 3347449 145 - 4731479 CAGCTTCCAGAGCCAAGCTAACCATGCTGAACACGATGTCGAAGATCCGCGGGCAGGTGAAGAACCCTGGCTACCCACAGTCAGAAGGGCTGCTGGGGGAGAGCATGATCCGCTATGGCAAGGAGCTGGGCGAGGACTCCAACTT s fr1.chrUn 195930823 145 + 349519338 CAGCGTCCAGAGCCAAGCTGTCCATGCTGAACACCATGTCCAAGATCCGAGGGCAGGTGAAGAACCCGGGCTACCCGCAGGCCGAGGGGCTGCTGGGGGAGTGCATGACCAAATATGGCCGGGACCTGGGAGAGGAGACCAACTT s danRer1.chr9 4773030 145 + 28422069 CAGCATCTCGTGCAAAGCTTTCTATGTTAAACACTATGTCTAAGATCAGAGGGCAGGTGAAAAGTCCAGGTTATCCACAGGCTGAGGGGCTGCTGGGAGAATGTATGGGAAAATATGGCAGAGAACTCGGAGAAGAAACAAACTT a score=294.0 s hg17.chr17_random 1162382 1 + 2618010 C s panTro1.chr19 15552729 1 - 82489036 C s mm5.chr17 39261135 1 - 93559791 C s canFam1.chr20 58132614 1 + 61172541 T s galGal2.chr28 3347594 1 - 4731479 T s fr1.chrUn 195930968 1 + 349519338 T a score=-31.0 s hg17.chr17_random 1162383 1 + 2618010 A s fr1.chrUn 195930969 1 + 349519338 G a score=67.0 s hg17.chr17_random 1162383 1 + 2618010 A s panTro1.chr19 15552730 1 - 82489036 A s mm5.chr17 39261278 1 - 93559791 G s canFam1.chr20 58132615 1 + 61172541 G a score=-31.0 s hg17.chr17_random 1162383 1 + 2618010 A s galGal2.chr28 3347595 1 - 4731479 G a score=2574.0 s hg17.chr17_random 1162384 2 + 2618010 GC s panTro1.chr19 15552731 2 - 82489036 GC s mm5.chr17 39261279 2 - 93559791 GT s canFam1.chr20 58132616 2 + 61172541 GT s galGal2.chr28 3349456 2 - 4731479 GC s fr1.chrUn 195930970 2 + 349519338 GT s danRer1.chr9 4773297 2 + 28422069 GT a score=168828.0 s hg17.chr17_random 1162386 128 + 2618010 GATGCACTGCTGGATGCCGGCGAGCCCATGAAGCACCTGGCAGAGGTGAAGGACTCCCTGGACATAGAGGTCAAGCATAACTTCATGGACCCCCTCCAGAACCTATGTGAGAAAGACCTGAAGGAGAT s panTro1.chr19 15552733 128 - 82489036 GATGCACTGCTGGATGCCGGCGAGCCCATGAAGCACCTGGCAGAGGTGAAGGACTCCCTGGACATAGAGGTCAAGCATAACTTCATTGACCCCCTCCAGAACCTATGTGAGAAAGACCTGAAGGAGAT s mm5.chr17 39261281 128 - 93559791 GATGCCCTGCTAGATGCAGGTGAGTCCATGAAGCGCCTGGCTGAGGTGAAGGACTCACTGGACATCGAGGTCAAGCAGAACTTCATTGACCCACTACAGAACCTGTGTGACAAGGATCTGAAGGAGAT s canFam1.chr20 58133062 128 + 61172541 GACGCCCTGTTGGACGCAGGGGAGTCCATGAAGCGCCTGGCAGAGGTGAAAGACTCCCTGGACATAGAGGTCAAGCAGAACTTCATCGACCCCCTGCAGAACTTGTGCGACAAAGACCTGAAGGAGAT s galGal2.chr28 3349458 128 - 4731479 GACGCGCTGCTTGATGCTGGGGAATCTATGAAGCGGTTGGCTGAAGTGAAGGACTCGCTGGATATTGAAGTCAAACAAAATTTTATTGATCCCCTCCAGAACCTGTGTGACAAAGACCTGAAAGAGAT s fr1.chrUn 195931047 128 + 349519338 GGAGCGCTGGTGGACGTCGGGGAGTCCATGAAGAGGCTGGCAGAAGTCAAAGACTCCCTCGATATCGACGTCAAACAGAACTTCATCGACCCGTTGCAAGGGCTCTGTGACAAGGACCTCAAAGAGAT s danRer1.chr9 4773299 128 + 28422069 GGTGCTCTAATGGAAGTTGGGGAAAGTATGAAGAGACTAGCAGAGGTGAAGGATTCTTTGGACATTGATGTCAAACAGAACTTCATCGACCCTTTACAAGGCCTGTGTGACAAGGACTTGAGAGAGAT a score=-114.0 s hg17.chr17_random 1162514 1 + 2618010 C s danRer1.chr9 4773427 1 + 28422069 A a score=600.0 s hg17.chr17_random 1162514 1 + 2618010 C s panTro1.chr19 15552861 1 - 82489036 C s mm5.chr17 39261409 1 - 93559791 C s canFam1.chr20 58133190 1 + 61172541 C a score=100.0 s hg17.chr17_random 1162514 1 + 2618010 C s galGal2.chr28 3350422 1 - 4731479 C a score=-2370.0 s hg17.chr17_random 1162514 1 + 2618010 C--------------------------------------------------------------------- s fr1.chrUn 195931175 70 + 349519338 CCAGGTGAGACAGATCGAACGTCCCAGTCGTGCCCTTAACTTCTAATCAGGCTTTTTCCACCCCCCCCCT a score=230901.0 s hg17.chr17_random 1162515 159 + 2618010 CAGCACCACCTGCAGAAGCTGGAGGGCCGCCGCCTGGACTTTGACT---AAAAGAAGCGGCAGGGCAAGATCCCCGAAGAGGAGCTGCACCAGGCGCTGGAGAAGTTTGAGGAGTCCAAGGAGGTGGCAGAAACCAGCATGCACAACCTCCTGGAGACCGAC s panTro1.chr19 15552862 159 - 82489036 CAGCACCACCTGCAGAAGCTGGAGGGCCGCCGCCTGGACTTTGACT---AAAAGAAGCGGCAGGGCAAGATCCCCGAAGAGGAGCTGCACCAGGCGCTGCAGAAGTTTGAGGAGTCCAAGGAGGTGGCAGAAACCAGCATGCACAACCTCCTGGAGACCGAC s mm5.chr17 39261487 162 - 93559791 CAGCACCACCTGAAGAAATTGGAGGGCCGCCGCCTTGACTTTGACTACAAGAAGAAGCGCCAGGGCAAGATCCCCGATGAGGAGCTGCGCCAGGCCCTAGAGAAGTTCGAGGAGTCCAAGGAGGTGGCGGAGACCAGTATGCACAACCTCCTGGAGACTGAT s canFam1.chr20 58133349 162 + 61172541 CAGCACCACCTGAAGAAGCTAGAGGGCCGCCGCCTGGACTTTGACTACAAGAAGAAGCGACAGGGCAGGATTCCCGATGAGGAGCTGCGCCAGGCCCTGGAGAAGTTCGAAGAGTCCAAGGAGGTGGCTGAGACCAGCATGCACAACCTCCTGGAGACTGAT s galGal2.chr28 3350423 162 - 4731479 CAGCACCATCTCAAGAAGCTGGAAGGCAGACGCTTGGACTTTGATTACAAGAAGAAGCGACAGGGAAAAATCCCTGATGAGGAACTCCGACAGGCCATGGAGAAATTTGAAGAGTCCAAGGAAGTAGCAGAGACCAGTATGCACAACCTCCTAGAAACTGAT s fr1.chrUn 195931245 162 + 349519338 CAGCACCACCTGAAGAAGCTGGAGGGACGTCGCCTGGATTACGATTACAAGAAGAAGCGCCAGGGCAAGATCCCTGACGAGGAGGTCCGACAGGCCCTGGAGAAGTTCCACGAGTCAAAGGAGGTGGCGGAGACGAGCATGTACAACCTGCTGGAGACTGAT s danRer1.chr9 4775276 162 + 28422069 CAGCACCATTTGAAAAAGCTTGAAGGACGCAGGCTGGATTATGACTATAAGAAGAAACGTCAGGGGAAAATTCCAGATGAAGAGCTCAGGCAAGCGCTGGAGAAGTTTCATGAATCTAAGGAGGTGGCTGAGATCAGCATGTACAACCTTCTGGAAACCGAT a score=2385.0 s hg17.chr17_random 1162674 2 + 2618010 AT s panTro1.chr19 15553021 2 - 82489036 AT s mm5.chr17 39261649 2 - 93559791 GT s canFam1.chr20 58133729 2 + 61172541 AT s galGal2.chr28 3350589 2 - 4731479 GT s fr1.chrUn 195931674 2 + 349519338 AT s danRer1.chr9 4775438 2 + 28422069 GT a score=-600.0 s hg17.chr17_random 1162676 2 + 2618010 CC s panTro1.chr19 15553023 2 - 82489036 CC s mm5.chr17 39261651 2 - 93559791 GC s canFam1.chr20 58133731 2 + 61172541 CG s galGal2.chr28 3350591 2 - 4731479 GC s fr1.chrUn 195931676 2 + 349519338 CG a score=73207.0 s hg17.chr17_random 1162678 95 + 2618010 AGTAGGTGAGTCAACTCC---CGGCCTTGGCAGAGGCGCAGCTGGACTACCACCGGCAGGCCGTGCAGATCC---TGGACCAGCTGGCC------CAGAAGTTCAAG s panTro1.chr19 15553025 95 - 82489036 AGTAGGTGAGTCAACTCC---CGGCCTTGGCGGAGGCGCAGCTGGACTACCACCGGCAGGTCGTGCAGATCC---TGGACGAGCTGGCC------CAGAAGCTCAAG s mm5.chr17 39261778 95 - 93559791 AGCAGGTGAGCCAGCTCT---CGGCCCTGGTGGATGCCCAGCTGGACTACCACCGGCAGGCAGTGCAGATCC---TGGAGGAGCTGGCT------GACAAGCTGAAG s canFam1.chr20 58133733 95 + 61172541 AGCAGGTGAGCCAGCTCT---GCGCGCTGGTGGATGCCCAGCTGGACTATCACCGTCAGGCCGTGCAGATCT---TGGACGAACTGGCC------GACAAGCTCAAG s galGal2.chr28 3350595 98 - 4731479 GGGGGGCGCCTGGACTCCTTGCTGCCCCAGGGGCTGAG-AGCTGGG--------GGCGAGTTGTGTGCTTCCATTTGCCTGAGGGTGCCACTGGGAATGAGTTTAGC s fr1.chrUn 195931678 95 + 349519338 AGCAGGTGAGCCAGCTGT---CGTCGCTGGTGGACTCTCAGCTGCAGTACCACAGACAGGCCGTGCAGGTTC---TGGACGAGCTGTCC------GACAAACTCCGA s danRer1.chr9 4777750 95 + 28422069 AGCAGGTGAGCCAGCTGT---CTTCACTGGTTGAGTCTCAGCTGCAGTACCACAGACAGGCTGTTCAGATTC---TCGATGAACTCTCT------GACAAACTCAGA a score=-262.0 s hg17.chr17_random 1162773 2 + 2618010 TG- s panTro1.chr19 15553120 2 - 82489036 TG- s mm5.chr17 39262340 2 - 93559791 TG- s canFam1.chr20 58133828 2 + 61172541 CG- s galGal2.chr28 3350700 2 - 4731479 CG- s fr1.chrUn 195931779 2 + 349519338 TG- s danRer1.chr9 4777845 2 + 28422069 -GA a score=615.0 s hg17.chr17_random 1162775 4 + 2618010 CAG------------G s panTro1.chr19 15553122 4 - 82489036 CAG------------G s mm5.chr17 39262342 4 - 93559791 CAG------------G s canFam1.chr20 58134582 4 + 61172541 CAG------------G s galGal2.chr28 3350702 4 - 4731479 CAA------------C s fr1.chrUn 195931786 16 + 349519338 CAGTGGCTCCTGAGTC s danRer1.chr9 4777847 4 + 28422069 CAG------------G a score=13853.0 s hg17.chr17_random 1162779 54 + 2618010 ATCC--GGGAAGCTTCC-------------------------------------TCACGACCCAGGCGGGAGTATAAGCCCAAGCCCCGGGA------G s panTro1.chr19 15553126 54 - 82489036 ATCC--GGGAAGCTTCC-------------------------------------TCACGACCCAGGCGGGAGTATAAGCCCAAGCCCCGGGA------G s mm5.chr17 39262346 54 - 93559791 GTTC--GGGAAGCCTCC-------------------------------------TCACGCCCCAAGCGGGAGTTCAAGCCCCGGCCCCGGGA------G s canFam1.chr20 58134586 54 + 61172541 ATGC--GAGACGCCTCC-------------------------------------TCTCGCCCCAAGCGGGAATACAAGCCCAAGCCTCGGGA------G s galGal2.chr28 3350706 58 - 4731479 ACCCTTGGGAAGAATT-----------------------------------------TGACCGGCTGGGGAAGGGAAGCCTTGAGGGTGGGACACAGTG s fr1.chrUn 195931802 91 + 349519338 ACCT--GTGGAACTTCTCTAATCACCTTCTGCTCCCAGGGTGAACGAAGCTCAGTCTCGACCACGGCGTGAATACACTCCCAAACCCAAACC------C a score=16102.0 s hg17.chr17_random 1162833 59 + 2618010 TGCTTTGACCTCGGAAAGCCTGAGCAGTCCAACCGGGGCTTCCCCTGCACCACAGTCCC----- s panTro1.chr19 15553180 59 - 82489036 TGCTTTGACCTCGGAAAGCCTGAGCAGTCCAACCGGGGCTTCCCCTGCACCACAGTCCC----- s mm5.chr17 39262400 59 - 93559791 CCCTTTGAGCTTGGAGAGCTGGAGCAGCCCAATGGGGGATTCCCCTGTGCCCCAGCACC----- s canFam1.chr20 58134640 59 + 61172541 CCCTTCGACCTGGGGGAGCCTGAGCAGTCCAATGGGGGCTTCCCCTGTGCCACAGCCCC----- s galGal2.chr28 3350764 45 - 4731479 GCCTCTGTTCT-GCTGAGTCTGAGC-------CAGAG------CCTGGTCTCTACTATC----- s fr1.chrUn 195931893 59 + 349519338 ATCTTCGACTTCGGAGACGACAGCCACTCGAACGGCGGCTACTCGGCCCCGATGGCCCC----- s danRer1.chr9 4783415 58 + 28422069 TATTTTGTCTTTTGAAATATTATGTATACTAACA------TCCCTTGTTCCCCAAATCTCTCCT a score=5070.0 s hg17.chr17_random 1162892 6 + 2618010 CAAGAT s panTro1.chr19 15553239 6 - 82489036 CAAGAT s mm5.chr17 39262459 6 - 93559791 TAAGAT s canFam1.chr20 58134699 6 + 61172541 CAAGAT s galGal2.chr28 3350809 6 - 4731479 TGAAAT s fr1.chrUn 133668351 6 - 349519338 GGAGAT s danRer1.chr9 4783473 6 + 28422069 CACTAT a score=-9905.0 s hg17.chr17_random 1162898 54 + 2618010 C----------------------------------------------------------------------------------GCAGCTTCGTCCTCTTTCCGATCTTACGACAAGTCCATCTGGAC---TCC------TAGCAG s panTro1.chr19 15553245 54 - 82489036 C----------------------------------------------------------------------------------GCAGCTTCGTCCTCTTTCCGATCTTACGACAAGTCCATCTGGAC---TCC------TAGCAG s mm5.chr17 39262465 136 - 93559791 CACAGGTAGCAAACCCCCCTGGAAGGTGCCAGGGATGGAGCGAGGCCTGTTCACCCCACTCACACCTGCCCTCCTCTCTATTAACAGCCTCCTCATCATTTAGATCGTCAGACAAGCCCATCAGGAT---GCC------CAGCAA s canFam1.chr20 58134840 54 + 61172541 C----------------------------------------------------------------------------------ACAGCTTCGTCATCTTTCCGATCTTCTGACAAGCCCATCCGGAC---CCC------CAGCAG s galGal2.chr28 3350816 57 - 4731479 C----------------------------------------------------------------------------------CAAACCTCATCCTCATTTCCTTGGGTATGCTGTCCCTTGTGCACATGTCC------CAGTAT s fr1.chrUn 133668357 57 - 349519338 -------------------------------------------------------------------------------------CGCCAGGTGACTCTTCCCACCCGGGACTTCAACCGGCTGTGC---TCCGCCTCACAACTG s danRer1.chr9 4783479 40 + 28422069 -------------------------------------------------------------------------------------CTCTTTCTCATAATTTC---------------TCCTCTATAT---CTCTACT--CAGCAG a score=0.0 s hg17.chr17_random 1162952 14 + 2618010 GAGCATGCCGCCCC a score=-1788.0 s hg17.chr17_random 1162952 8 + 2618010 GAGCATGC-------- s panTro1.chr19 15553299 8 - 82489036 GAGCATGC-------- s mm5.chr17 39262601 8 - 93559791 GAGCATGC-------- s canFam1.chr20 58134894 8 + 61172541 GAGCATGC-------- s galGal2.chr28 3350873 5 - 4731479 GATCT----------- s fr1.chrUn 133668414 16 - 349519338 TTGCTTTGTCTTTCAG a score=5994.0 s hg17.chr17_random 1162960 6 + 2618010 CGCCCC s panTro1.chr19 15553307 6 - 82489036 CGCCCC s mm5.chr17 39262716 6 - 93559791 CACCCC s canFam1.chr20 58135363 6 + 61172541 CACCCC s galGal2.chr28 3350878 6 - 4731479 CAGCCC s fr1.chrUn 195933278 6 + 349519338 CGGCCC a score=1653.0 s hg17.chr17_random 1162966 2 + 2618010 TA s panTro1.chr19 15553313 2 - 82489036 TA s mm5.chr17 39262722 2 - 93559791 TG s canFam1.chr20 58135369 2 + 61172541 TG s galGal2.chr28 3350884 2 - 4731479 TA s fr1.chrUn 195933284 2 + 349519338 TG s danRer1.chr9 4783519 2 + 28422069 CA a score=251314.0 s hg17.chr17_random 1162968 181 + 2618010 GACCAGCCGAGCTGCAAGG-GCTGTATGACTTGGAGCCGGAGAAAGATAGGGAGCTGGGCTTCCATGAGGGCGATGTCTTCATGCTGATCAACCAGATGAACGAGAACTGATACGAGGGCATGCTGGACGGCCAGTCGGGCTTCTTCCTGCTCAGCTATGTGGACGTGCTCGTGCCTCTGCC s panTro1.chr19 15553315 181 - 82489036 GACCAGCCGAGCTGCAAAG-GCTGTATGACTTGGAGCCGGAGAAAGATAGGGAGCTGGGCTTCCATGAGGGCGATGTCTTCATGCTGATCAACCAGATGAACGAGAACTGATAGGACGGCATGCTGGATGGCCAGTCGGGCTTCTTCCTGCTCAGCTATGTGGACGTGCTCGTGCCTCTGCC s mm5.chr17 39262724 182 - 93559791 GACCAGCCAAGCTGCAAGGCGCTTTATGATTTTGAGCCAGAGAATGATGGCGAGCTGGGCTTCCGTGAGGGGGACCTCATCACGCTTACCAACCAGATCGACGAGAACTGGTATGAGGGGATGCTGCACGGCCAATCAGGCTTCTTCCCACTCAGCTACGTGCAGGTGCTGGTGCCTCTGCC s canFam1.chr20 58135371 182 + 61172541 GACCAGCCAAGCTGCAAAGCTCTGTACGACTTTGAGCCTGAGAATGCCGGGGAACTGGGCTTCCACGAGGGTGACGTCATCACGTTGACCAACCAGATCGACGAGAACTGGTACGAGGGCATGCTCCACGGCCAGTCGGGCTTCTTCCCCCTCAGCTACGTGGAGGTGCTGGTGCCCTTGCC s galGal2.chr28 3353997 182 - 4731479 GACCAGCCCTGCTGCAAGGCACTCTATGACTTCGAACCCGAGAACGATGGTGAGCTGGGCTTCAAGGAAGGTGACATCATCACCCTGACCAACCAGATCGATGAAAACTGGTACGAGGGCATGATCAATGGCCAGTCAGGCTTCTTCCCGCTCAACTACGTGGAAGTGCTGGTTCCACTACC s fr1.chrUn 195933286 182 + 349519338 GAGCAGCCGAGCTGTAAGGCGCTGTACGACTTTGAGCCCGAGAACGAGGGAGAGCTGGGCTTCCACGAGGGCGACATCATCACGCTGACCAACCAGATCGACGAGAACTGGTACGAGGGGATGCTGAACGGCCAGTCGGGCTTCTTTCCCCTCAACTACGTGGAGGTCCTCATCCCGCTGCC s danRer1.chr9 4783521 182 + 28422069 GAGCAGGCATGCTGTAAGGCTCTCTATGACTTCGAGCCGGAGAACGAAGGCGAGCTGGGCTTCCACGAGGGTGACATCATCACTCTGACCAATCAGATCGATGAAAACTGGTATGAAGGCATGCTGCGTGGCCAATCAGGATTCTTCCCTCTCAACTACGTGGAGGTGATTGTTCCTCTGCC a score=9306.0 s hg17.chr17_random 1163149 7 + 2618010 CAGTGAC s panTro1.chr19 15553496 7 - 82489036 CAGTGAC s mm5.chr17 39262907 7 - 93559791 CAGTGAC s canFam1.chr20 58135554 7 + 61172541 CAGTGAC s galGal2.chr28 3354180 7 - 4731479 CAGTGAA s fr1.chrUn 195933469 7 + 349519338 CACTAAT s danRer1.chrNA 254846417 7 - 390413307 CAGTGAA a score=273.0 s hg17.chr17_random 1163156 1 + 2618010 T s panTro1.chr19 15553503 1 - 82489036 T s mm5.chr17 39262914 1 - 93559791 T a score=-1228.0 s hg17.chr17_random 1163156 20 + 2618010 -TCAGGGGCGCCCCCGCCCTG s galGal2.chr28 3354187 17 - 4731479 ----TTGGCATCTCTCCCCGT s fr1.chrUn 195933524 20 + 349519338 -TCAGCAGAATCTTTACACTT s danRer1.chrNA 254846424 21 - 390413307 CCAAACATCCACTTCACCCAG a score=808.0 s hg17.chr17_random 1163157 19 + 2618010 -CAGGGGCGCCCCCGCCCTG s panTro1.chr19 15553504 19 - 82489036 -CAGGGGCGCCCCCACCCTG s galGal2.chr28 3354188 16 - 4731479 ----TGGCATCTCTCCCCGT s fr1.chrUn 195933525 19 + 349519338 -CAGCAGAATCTTTACACTT s danRer1.chrNA 254846425 20 - 390413307 CAAACATCCACTTCACCCAG a score=-912.0 s hg17.chr17_random 1163176 26 + 2618010 ------CCCCTCCATCCACACTGGGTGGCACC s panTro1.chr19 15553523 26 - 82489036 ------CCCCTCCATCCACACTGGGTGGCACC s canFam1.chr20 58135561 22 + 61172541 ------CCCGTCAGCCCGGTCCAGGTGG---- s galGal2.chr28 3354205 26 - 4731479 ------CCTCTCCACTCGTGCCCCCACACAGC s fr1.chrUn 195933550 26 + 349519338 ------CAGCTCCATCTTAACCGGAGAGCACC s danRer1.chrNA 254846445 18 - 390413307 CATCCTCTGCTGCATTCT-------------- a score=-832.0 s hg17.chr17_random 1163202 25 + 2618010 CCCTGCTGGGTATCCTGC-CTTCCAC s panTro1.chr19 15553549 25 - 82489036 CCCTGCTGGGTATCCTGC-CTTCCAC s canFam1.chr20 58135583 14 + 61172541 -CCTGC-----ATCCCAC-CT----- s galGal2.chr28 3354231 23 - 4731479 CCAGGGCCG--AGCCTGC-ATTCCAC s fr1.chrUn 133668697 26 - 349519338 CCCTTCTACTTCTTCTGTGCTTCTGT s danRer1.chrNA 254846463 25 - 390413307 CACCGATGAAAGCCTTGC-GTTTCAC a score=300.0 s hg17.chr17_random 1163227 1 + 2618010 G s panTro1.chr19 15553574 1 - 82489036 G s galGal2.chr28 3354254 1 - 4731479 G a score=5930.0 s hg17.chr17_random 1163228 37 + 2618010 GGGCCCCTGCTGCCAGGGCAGTGTCCAAGCCTGCTGG s panTro1.chr19 15553575 37 - 82489036 GGGCCCCTGCTGCCAGGGCAGTGTCCAAGCCTGCTGG s canFam1.chr20 58135597 29 + 61172541 --GCCTCTGCAGCCAGGGCTG------AGCCTGCCTG s fr1.chrUn 133668723 37 - 349519338 GCGATTCTGCTTTAACGACATGAACTGAAACAGCAGG a score=17442.0 s hg17.chr17_random 1163265 166 + 2618010 CGCCACCCAGGCCGGGGCCCTTGAGGTACTCCCTGAGCAGGGCTCCACACTTGGGTG----GGGGGCTTATCTGGGTGGGT-------GGAGATGCTCGTTTACACTAGCGGCTGATCCCCAACAGTGACGGCTCCCTTCCCCACTCCATGGC-------GCCGGCCTCCTCCCC-GCTCCCCAA s panTro1.chr19 15553612 166 - 82489036 CGCCACCCAGGCCGGGGCCCTTGAGGTACTCCCTGAGCAGGGCCCCACACTTGGGTG----GGGGGCTTATCTGGGTGGGT-------GGAGACACTTGTTTACACTAGCGGCTGATCCCCAACGGTGACGGCTCCCTTCCCCACTCCATGGC-------GCCGGCCTCCTGCCC-ACTCCCCAA s canFam1.chr20 58135626 159 + 61172541 CGCTC------CTGGGGCCACTGGGGAA-------GGCAgg---ccccgctggggcggccagggggc------gggggggcccggggggcaggggcccgcTTCCACTAGCAG----TCACCCACAGTCCCCTTTCCATGCAGCAGTCCAGGGCCTAGGGAGTAGGTTTCCTGCCCAGGGCCCCAA a score=0.0 s hg17.chr17_random 1163431 18 + 2618010 CTCCTTGCCCAGCTGGCT a score=1333.0 s hg17.chr17_random 1163431 15 + 2618010 CTCCTTGCCCAGCTG s panTro1.chr19 15553778 15 - 82489036 CTCCTCGCCCAGCTG a score=445.0 s hg17.chr17_random 1163446 3 + 2618010 GCT s panTro1.chr19 15553793 3 - 82489036 GCT s mm5.chr17 39262943 3 - 93559791 GCA a score=17158.0 s hg17.chr17_random 1163449 121 + 2618010 GAGGCAGAGCAACACTAAGGTGCTCTCAGAAACACTAACGTTC-------------------------------------CTCCAGGGCAGCCCCCACACCTCCATCCTG---------------------AACCCACGGTGGCCCAGCCC----ACT-------GCCTACCCTCGAGTTCC-----------------ACGGCCTT- s panTro1.chr19 15553796 120 - 82489036 GAGGCAGAGCAACACTAAGGTGCTCTCAGAAACACTAATGTTC-------------------------------------CTCCAGGGCAGCCCCCACACCTCCATCCTG----------------------ACCCACGGTGGCCCAGCCC----ACT-------GCCTACCCTCGAGTTCC-----------------ACGGCCTT- s mm5.chr17 39262946 131 - 93559791 GCAGCAGTCTAATGCCAAGGTGCTCT-AGAAACACTAATGTTC-------------------------------------CTCCAGGGGGGACTCCTCCCCACTCCCTCA---------------------GCCCTGGGGCCCCCCTATCCTAAGACTCGGAAAGGCCCACCCTGAGGTTCT-----------------ATTGCCTT- s canFam1.chr20 58135785 193 + 61172541 GGGGC----TAACACTAAGGTGCTCTTAGAAACACTAACTTCCTCCCACCCCCCAGGAATACCTCTCCAGGAATGGGTAACTCCAGGTGGGCCCCCCTCCCTCCCTTCCTCCCACACACATGTGCACACATACCCTGTCCTGTCCCTCCCT----CCT-------CCCCTCTTTTGGGGTCCCCCCACCCGCCAGGAGACCTGCCCTT a score=4240.0 s hg17.chr17_random 1163570 53 + 2618010 AACAGGCT----TGGATCAAGCGTGCCTGTGG------------GG-----TGGCTCAGAGACAGGACTCTGGT s panTro1.chr19 15553916 53 - 82489036 AACAGGCT----TGGATCAAGCGTCCCTGTGG------------GG-----TGGCTCAGAGACAGGACTCTGGT s canFam1.chr20 58135978 74 + 61172541 AACAGCATGAGCTGGAACATCTGTGCCACTGGCTGTTCCGAGTAGGATCCCTGGCCAGGACTCACCACCCTGCC a score=12903.0 s hg17.chr17_random 1163623 108 + 2618010 TTTAAAT--CCTCCCCGCGCCTGGTGCTGGCGATGAGCCC-TAGCCCCACTCCAGGGCCACTGTATCCCAGCCTCACACATGCACTCCTTCTCCCCAAGGCCAGG----GCAGAA s panTro1.chr19 15553969 108 - 82489036 TTTAAAT--CCTCCCCGCGCCTGGTGCTGGCGATGAGCCC-TAGCCCCACTCCAGGGCCACTGTATCCCAGCCTCACACATGCACTCCTTCTCCCCAAGGCCAGG----GCAGAG s mm5.chr17 39263101 71 - 93559791 TTTCAAC--CCTTCCCA-GCCCGTTGCTGGCGATGGGCCCATGCCCCCTCTCCAGG----------------------------------CTCTCTAGAGGCAGG-------CAG s canFam1.chr20 58136052 102 + 61172541 TTTAAGTTACCTTCCAACACTCCTTCCTGGC-------------CCCAACTCCAGGGCTCCCCAGGCCCTGGCACACCCACAGATGCCACCTCCCTGGGGAGAGACAATCCTGGG a score=-1994.0 s hg17.chr17_random 1163731 85 + 2618010 GGCCTCACTGCTTCCCT---GGCCTGCTGTCAGCTT---GCAGCCCAGGGACAGGGGCCAGTTGGGATCTGCCCCCCCTTCCCCGCCCCAA s panTro1.chr19 15554077 83 - 82489036 GGCCTCACTGCTTCCCT---GGCCTGCTGTCAGCTT---GCAGCCCAGGGACAGGGGCCAGTTGGGATCTGCCCCACCTTCCC--CCCCGC s mm5.chr17 39263172 52 - 93559791 GTCCTTG--GAATCCCC---AGCCTGC---------------------AAGCAGAGGCTGGCCAG-------------CTCCCCAGCTCAG s canFam1.chr20 58136154 73 + 61172541 GTTCTCAGGGTTCCCCTAAAGACCAGCCCTGTCCTG--AGCAGCCCTTGAGCTGCTGTCATCT---------------CTCCCT-GCAGGG s fr1.chrUn 195936721 88 + 349519338 GACTTCTTTGCTGGGTT---GACCAGACGTTTGCAGTGTGTGGCCCAGGCGCTGGGGGAGTTAAAGATCTGTCCCGTCTCCACCCACCTGA a score=29620.0 s hg17.chr17_random 1163816 251 + 2618010 CACCTCCCCCCTCCTAACCAGGACAGAGA-ACATGACGTCCTGCAGGGCCCCGCCTCCCAAGCCTTGCCCTCACAAAGCCAAGTACCTTTTCGGCTTTTTAACTGCCCCCAGCCAGGCCCACAGAAGCCTGTGTCACTCTGGCACAAGCTGCCACCACCAGCCACCTACACAACCCTCA---GCACACCTTGCACGGGACCACAG-----CCCCAGCT---GTGCTGCTGAGGGCCAAGCACAAAGGCTCCAGTGAGCAAATC s panTro1.chr19 15554160 251 - 82489036 CACCTCCCCCCTCCTAACCAGGACAGAGA-ACATGACGTCCTGCAGGGCCCCGCCTCCCAAGCCTTGCCCTCACAAAGCCAAGTACCTTTTCGGCTTTTTAACTGCCCCCAGCCAGGCCCACGGAAGCCTGTGTCACTCTGGCACAAGCTGCCACCACCAGCCACCTACACAACCCTCA---GCACACCTTGCACGGGACCACAG-----CCCCAGCT---GTGCTGCTGAGGGCCAAGCACAAAGGCTCCAGTGAGCAAATC s mm5.chr17 39263224 131 - 93559791 CAC-------------------ACAGAGACACCTGGCA-CCTGCTG-----------------------CTCATGAAG--AAGT---------------------------------------------------------GCACAAG-------------------GCACAAATGT-----GTACACTTCCCATGGGACCACAG-----ACCCAGCT-CAGCTCTGTTGAAGACCAAGCACAAAGGCCTTGAAGAGTGGACA s canFam1.chr20 58136227 227 + 61172541 CAC-TGAGCCCTGCACACCAGT--------GCCCTCCACCCTGTCCCGCACCCCCTCCT---CTGTTCCCACATGTAG---GGTACCCC----------------ACCCCAGACAAGCACACGGAA-----CGTTTCTCTGGCACGAGCTGCCACCACCAGCTGTGCACACGGCACTCACGTGTGCACCACAAACAGGACCACAGGAGTCTTCCAGCCTCTGCTCTGCTGAAGGTCAAATATAAAGGCTTTGATGAGTGAATG a score=1291.0 s hg17.chr17_random 1164067 17 + 2618010 --TTCAAGCCCCTAGTGGC s mm5.chr17 39263357 13 - 93559791 --CCCAGGTCCCTGG---- s canFam1.chr20 58136454 19 + 61172541 TTCCCAGACCCCTGGTTGC a score=600.0 s hg17.chr17_random 1164082 2 + 2618010 GC s panTro1.chr19 15554552 2 - 82489036 GC s canFam1.chr20 58136471 2 + 61172541 GC a score=49841.0 s hg17.chr17_random 1164084 358 + 2618010 ----------------------------CACCCCACCCTG--TGGGAAGTAGCCGCAGCCATCTCCTCT-AGACCATG-----GCAGGCAACCCCGGG--GTTCCCAAACCCCTGCCCAGACCAGCAGG-TCTGCAGCCCAGACATCTGCTTCCTCTGTTGCCCAATCC-AAAACTGATGAAATGGAGGGTCCTCTGGGCCGGGCCACATTCACATTCCCCTCCCCCTGAGGCCCAGCGAAGCCTC-CAGACCCCAGGCTCTGCTCTG-----CACCCTCCACGTCAGCAGTACATGAGG---GCACAGACATCCTGGCAGAGATGAGC-ACACAGCCTTGGGCACGGTTCAGGGCAAACTGAAATGTATGCCTGA--ATTTTGTAAACAGAAGTATTAAAGGTCTTTCT-- s panTro1.chr19 15554554 358 - 82489036 ----------------------------CACCCCACCCTG--TGGGAAGTAGCCGCAGCCATCTCCTCT-AGACCATG-----GCAGGCAACCCTGGG--GTTCCCAAACCCCTGCCCAGACCAGCAGG-TCTGCAGCCCAGACATCTGCTTCCTCTGTTGCCCAATCC-AAAATTGATGAAATGGAGGGTCCTCTGGGCTGGGCCACATTCACATTCCCCTCCCCCTGAGGCCCAGCGAAGCCTC-CAGACCCCAGGCTCTGCTCTG-----CACCCTCCTCGTCAGCAGTACATGAGG---GCACAGACATCCTGGCAGAGATGAGC-ACACAGCCCTGGGCACGGGTCAGGGCAAACTGAAATGTATGCCTGA--ATTTTGTAAACAGAAGTATTAAAGGTCTTTCT-- s mm5.chr17 39263370 326 - 93559791 ----------------------------CACCTTCCCTTG----------AGCCAGCTCCATTGCTACT-TATTCATGTGACTGAAGCTGACCACAGGCAGCTGGCAGGTCCTTTTTTCAACCAGCAGGCTAGGCTGGCCATAGACCCA---GCTCTGCCTCACCCTGC-CATGTTCCAGTAATGGAGG--CCTCCAGCCTGGGCTCTATT-ACATTCTTCTC---------TACAGCT--GCCCC-ATAACCCGTGGCTTATCCCTG----------------------GCACGTGGGG---CCACACCCCACGCCCCCTGGATAGGCAACACTGTCCTGCTC-CAGCCTGTGCTGAAATGAACTGTACTCCTAATTTTTTTTTAAAAAAAAGTATTAAATATCTCTTT-- s canFam1.chr20 58136473 376 + 61172541 TGGGACTACCCCTCAGGAGGGTCACAGGCACCTTCCCCATCCTAAGCCGTGGCCGTAGCCATCTCCCTTCAGACCAAG-----GCAGGCAGC---------------------TGCCCTGACCAGCAGA---GCCCAGCCCTGCTTCCACTTCCTGTCTTGCCTCATCCAAAAATTGGCTAAACCGGGGGACTTCGGGACTGGATC------ACATTCCCCTCCTCTGATGACCCAGCAAAGCCCCGGGGACACCAAGCTCTGCTCCTGAGGCCACCCCCCTCATTGCCATTCCATGAGGGATGCACGTGCATCCCAGCTAAGATGAGCAGTGTAGCCTTGGTCACAATCGAGGGCAGGTTGAAATGTAATCCTGA-ATTTTTTTTAAGAAAAGTATTAAATGTCTCTTTCT a score=-221.0 s hg17.chr17_random 1164442 4 + 2618010 ACA---------A s panTro1.chr19 15554912 13 - 82489036 ACACACACACACa s canFam1.chr20 58136849 4 + 61172541 ACA---------A a score=219150.0 s hg17.chr17_random 1164446 2397 + 2618010 AaaaaaaaaaaaaaaaatcatgaacgctaaatgcaatgtctgatgttggattggattctgaattttttaagccatgttatgattgggacaattgtgaaaatgtgtatatgggctgcatagtagacaatgataatatgaagttccattgggtgatgatagtcctctggttatgcaggagaatgccttgcttcttaggggctgcacactgaagtctttaatggcaaagggtcattttgtctgcaactgactctcaaatggtttgtccagaaaatgtatagacatacacacatggaaagcaaatgtggcaaagtattagcaactgttgattccagatgaaagttaaacaggtgttcattataccatCTGAAAATGCTTCCTAGCCATCCTAAGGCTTAAAGGAAAAAAAGAAAATGTTTAAAATCAAAAGTCGGGGGCAGGAAAAGAATAACAATTAAACTTCAggctcatgcctgtaatcccagcactttgggaggccaaggagagagggttgcttgagctcaggagtttgagaccagcctgggcaacatggtgaaaccccatctctacaaaaaatacaaaaatgagccaggcatggtggcactcacctgtagttctagctactcaggaggctgaggtgggaggatcatttgagcccaggaggcagaggctgcagtgaagtgagattgcaccactgcactcagcctgtgtaacagagtgagacttggcctcaaaacaaaagaaaCACTTTTGTGTCAGAGTTAAGGTTGCTATATAAGTAAAATGCTAGGTTACGGTTCTGGGTACATTCAATCTGTATGAAGATCAGAGACCTCTATTGGACCCAAAGGAATACTAGTCACTTGTGATTATTCCTCTATAGGTTTGAAAGATGTGTCAGACCAACTTATTGGATGCAGTTTTAATCTAAAACTCCATAAATTGTACCCCCAACTCATAGACTTCATTTATCTGTTGAATACTCTTCTGTTTCCACAGTCTTAATGTGGCCCTAATAAAGTCATCCTTTTGGAGGACTCAGAAAAGGCCCCCCCACAACCTCTGTAATGTAATAATTacagtagttaacatttattgagcactcactgtgtgtcaggcatttttcaggtactgattcatctaatcctcaaaactcattagaggtaggtactattataatgacaaggccaaggaacagagattaatcaatgtgcccaaattcacattattcacagagctgggatttaagcctagtctggctgtggaatctgtattcttaatgaccatgctatattgCTTAAGATTAACCTTGAGAATTTACTCCAGTTACAAAGATTGTTTTTATTTCTCTGAAACTGCCCCCAATGAGCCATAACAATAAATTAATCAATTATCTTGGTTATCTCTTTTGCCCAAGTTTATATTTCAAAAAAAATTCAAACATACCAGAAAGATGAAAGAATAGCAcagaatccaatcaaagattaggcactgcatgtcatgtcttcatttcctttaatctaaaacattcctctactttttttgatctttcatgacatggcattttttaagagtcaaagatagttgttttgtaaattgtcccataatctggatttgtctgtttccacatgatgagattcaaggtaagcatttttgggaaaaatactgcataggtgatatatccttcctgcctcgtgattgcaggtggctcataatgctaagtttgatcacttgtttaaggtgatcttccagatctctccattgtagttattttgctgggtgtggtggctcatgcttataatcccagcactttggaaggccgagacgggcagatcgcttgagtccaggagttttagaccagcctgagcaacaaggtgaaaccctgtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaattagctgggtgtggtggtacaagactatagtcccatatacttggggggctgaatttggagactcacttgagcccggggtgg-----------gggtcgaggctgtagtgagctacgattttgccactgtatttcagcctgggtgacagagtgagactttgtctcataaaaaaataaaaaataatttttccctttggtaattaataaaatatctgtgtggtggtactttgagatcagtaaagatcctgttctcaaatgtcttctcacccagctgtgtccatcaatgacaatccttgtctgaatcaatttttattacattggtggttgcaaagtaacactttttaaaattctgtcattccttctacattcattagctggcattatttcattaaagaacaactccctctctttttaaatatcattcttcatggattcttttttatatattaattatgttgtagcttattgttactcttttgaatgctc s panTro1.chr19 15554925 2390 - 82489036 aaaa-------------tcatgaacgctaaatgcaatgtctgatgttggattggattctgaattttttaagccatgttatgattgggacaattgtgaaaatgtgtatatggactgcatagtacacaatgataatatgaagttccattgggtgatgatagtcctctggttatgtaggagaatgccttgcttcttaggggctgcacgctgaagtctttaatggcaaagggtcattttgtctgcaactgactctcaaatggtttgtccagaaaatgtatagacatacacacatggaaagcaaatgtggcaaagtattagcaactgttgattccagatgaaagttatacaggtgttcattataccatCTGAAAATGCTTCCTAGCCATCCTAAGGCTTAAAGGAAAAAAAGAAAATGTTTAAAATCAAAAGTCAGGGGCAGGAAAAGAATAACAA--AAACTTTAggctcatgcctgtaatcccagcactttgggaggccaaggagagagggttgcttgagctcaggagtttgagaccagcctgggcaacatggtgaaaccccatctctacaaaaaatacaaaaatgagccaggcatggtggcactcacctgtagttctagctactcaggaggctgaggtgggaggatcatttgagcccaggaggcagaggctgcagtgaagtgagattgcaccactgcactcagcctgtgtaacagagtgagacttggcctcaaaacaaaagaaaCACTTTTGTGTCAGAGTTAAGGTTGCTATATAAGTCAAATGCTAGGTTACGGTTCTGGGTACATTCAATCTGTATGAAGATCAGAGACTTCTATTGGACCCAAAGGAATACTAGTCACTTGTGATTATTCCTCTATAGGTTTGAAAGATGTGTCAGACCAACTTATTGGATGCAGTTTTAATCTAAAACTCCATAAATTGTACCCCCAACTCATAGACTTCATTTATCTGTTGAATACTCTTCTGTTTCCACAGTCTTAATGTGGCCCTAATAAAGTCATCCTTTTGGAGGACTCAGAAAAGGCCCCCCCACAACCTCTGTAACGTAATAATTacagtagttaacatttattgagcactcactgtgtgtcaggcatttttcaggtactgattcatctaatcctcaaaactcattagaggtaggtactattataatgacaaggccaaagaacagagattaatcaatgtgcccaaattcacattattcacagagctgggatttaagcctagtctggctgtggaatctgtattcttaatgaccatgttatattgCTTAAGATTAACCTTGAGAATTTACTCCAGTTACAAAGATTGTTTTTATTTCTCTGAAACTGCCCCCAATGAGCCATAACAATAAATTAATCAATTATCTTGGTTATCTCTTTTGCCCAAGTTTATATTTCAAAAAAAATTCAAACATACCAGAAAGATGAAAGAATAGCAcagaatccaatcaaagattaggcactgcatgtcatgtcttcatttcctttaatctaaaacattcctctactttttttgatctttcatgacatggcattttttaagagtcaaagatagttgttttgtaaattgtcccacaatctggatttgtctgtttccacatgatgagattcaaggtaagcatttttgggaagaatactgcataggtgatatatccttcctgcctcgtgattgcaggtggctcataatgctaagtttgatcacttgtttaaggtgatcttccagatctctccattgtagttattttgctgggtgtggtggctcatgcttataatcccagcactttggaaggccgagacgggcagatcgcttgagtccaggagttttagaccagcctgagcaacaaggtgaaacc--gtctctactaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaattagctgggtgtggtggtacaagactatagtcccatatacttggagggctgaatttggagactcacttgagcccggggcggcgggggggggggggtcgaggctgtagtgagctatgattttgccactgtatttcagcctgggtgacagagtgagactttgtctca-aaaaaaataaaaaataatttttccctttggtaattaataaaatatctgtgtggtggtactttgagatcagtaaagatcctgttctcaaatgtcttctcacccagctgtgtccatcaatgataatccttgtctgaatcaatttttattacattggtggttgcaaagtaacactttttaaaattctgtcattccttctacattcattagctggcattatttcattaaagaacaactccctctctttttaaatatcattcttcatggattcttttttatatattaattatgttgtagtttattgttactcttttgaatgctc a score=39271.0 s hg17.chr17_random 1166843 143 + 2618010 aaattgtcgagatttggccaatgCAATC--TGTTATTTTTTTAACCCCACAATCCAGGTTAAACTGAGCTATTTTTAATGCCCAGAGTAATTTCTAATATTTCCCACTGCCAACAGAGATTGAGAAAGGGACTCCAGAAGTTGGG s panTro1.chr19 15557315 143 - 82489036 aaattgtcgagatttggccaatgCAATC--TGTTATTCTTTTAACCCCACAATCCAGGTTAAACTGAGCTATTTTTAATGCCCAGAGTAATTTCTAATATTTCCCACTGCCAACAGAAATTGAGAAAGGGACTCCAGAAGTTGGG s mm5.chr11 18515891 136 - 121648857 AAATAATCCAGATTTGGCTGATGTGATCCATGTTA-CCATTTAACCATAAAGTATGAGTTAAAGTAGGCTG--TTTGAGGCCTCACATAATTTCTAATATT-----CTGATGACAGGAATAGAGAAAATT-TTCCATAGGTTGGA s rn3.chr10 18070112 136 - 110733352 AAATAATCCAGATTTGGCTGATGTGATCCATGTTG-CCATTTAACCATAAAGTATGGATTAAAGTAGGCTG--TTTAAGGCCTCACATGATTTCTAATATT-----CTATTGACAGGAATAGAGAAAATT-GCCCATAGGTTGGA a score=76003.0 s hg17.chr17_random 1166986 214 + 2618010 GGCTTATTCAGACTCTTCTTAGAAGTCTACTTTCTTCCTGTGTACTTTCAGCCCAAAGTGAGACTTTTGAGTTGGGAAGAGATACTTCTGAATTAAACTACTGATCAGTGTCACCCAATTCTAATCCCAACCACTTTTATTCTAGGCATACCATACTCACTGCCATGCTTACCCTTCAGTTGGGCACCTTTGTCCTCCTTC----------------CCA--------TTGCCCTTCT s panTro1.chr19 15557458 214 - 82489036 GGCTTATTCAGACTCTTCTTAGAAGTCTACTTTCTTCCTGTGTACTTTCAGCCCAAAGTGAGACTTTTGAGTTGGGAAGAGATACTTCTGAATTAAACTACTGATCAGTGTCACCCAATTCTAATCCCAACCACTTTTATTCTAGGCATACCATACTCACTGCCATGCTTACCCTTCAGTTGGGCACCTTTGTCCTCCTTC----------------TCA--------TTGCCCTTCT s mm5.chr11 18516027 200 - 121648857 GGTTTGCTCAGAC----------------CCTTCTTCCTGTGAGTGACCAACCCAAA-TGAGACCTTTGAGTTCAGAAGAGACACTT----------CTATAGATCAGTG---------TCTGCTCCC-GCCATCTTTGTTTTAAGCATA-CACACCCACCCTGACACTTGCCTGTCTATTGAGCACCTCTGTCACCCTCCATGATTATTTTCAGTATCAGCAACAATTTGTCACTGA s rn3.chr10 18070248 183 - 110733352 GGCTTACTCAGGC----------------CCTTCTTGCTGTGCATGACGAACCCAGA-TGACACCTTTGAGCTCAGGAGAGATGCTT----------CTATGGATCAGTGTCACCTAGTTCTGCTTCC-GACATCTTTGTTTTAGGCATA-CACAACCACCCTGACACTTACCCACCTATAGAGCATCCCTGCCACCCC------------------CCA--------TGACCATTTT s canFam1.chr9 10744269 233 + 53642819 GACTTACTCAGACTCTTCTTAGAAGTCTACCCTCTTCCTGTATGCTCTTAACCCAAAGTGAGACTTTTGGGTCAGAAGGAGATACTTCTGAACTGAACTACTGATCAATGTCACCCAGTTCTTATCTCTGTC----TTATTCTAGGTATATCATACCCCCTACCATCCTTACCTATTGGTTGAGCACCTCTGTCCTTCTCTTTATTTATAATATTCATGAGCAACAATTGGCCAACT- a score=1196.0 s hg17.chr17_random 1167200 6 + 2618010 GGTTCC s panTro1.chr19 15557672 6 - 82489036 GGTTCC s mm5.chr11 18516227 6 - 121648857 GTCTCC s rn3.chr10 18070579 5 - 110733352 GTCTC- s canFam1.chr9 10744502 6 + 53642819 GGTCCC a score=132836.0 s hg17.chr17_random 1167206 286 + 2618010 TACCCAA--CTGTCCAGTC--CACAGGCCTCAGTAACACCTTTCTGCCCAGCCCTGTGGTAGCGTTGGCCTGCCTCCTTTGCCTACTCAAGTAACTGCTTTACCACTATT-TATT-GTTTTGTGTTTTCATCTTATAGGATCTTACCTAGCCATATGGCCTGCTGCCTCTGCCAATTTAAAAATAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACAGTGCATGT---------CTGACAAACACCACACATTGTCGTGAGTCCAAATTGCCTGGTGATA-------AATTGTTACat s panTro1.chr19 15557678 286 - 82489036 TACCCAA--CTGTCCAGTC--CACAGGCCTCAGTAACACCTTTCTGCCCAGCCCTGTGGTAGCATTGGCCTGCCTCCTTTGCCTACTCAAGTAACTGCTTTACCACTATT-TATT-GTTTTGTGTTTTCATCTTATAGGATCTTACCTAGCCATATGGCCTGCTGCCTCTGCTAATTTAAAAATAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACAGTGCATGT---------CTGACAAACACCACACATTGTCGTGAGTCCAAATTGCCTGGTGATA-------AATTGTTACat s mm5.chr11 18516738 261 - 121648857 GACCCAG--CTGCCCATGC--CTCATGCCTCAAGAACTCCTTCCTCGGCGACCCTGCGGTGGCCTTGGGCTGCCTCTCCTGCAC-CTCAA----------TATCCCAATT-------CTCTGTCGCTCCAT-TTGTAGGATCTTACCTAGCCGCATGGCCTGCTGCCTCTGCAAATTTAAAGCTGATATTGAGATTATCTGCAAGACAATCAAACTGCGTTGTCATACCGGATGT---------CTGACAAACACCACACATTGTCGTGAGTCT--CTTGCC---TGATA-------AATGATT---T s rn3.chr10 18070587 284 - 110733352 GACCCAG--CTGCCCATGC--CACATGCCCCAAGTACTCCTTCCTCTGCAACCCTGTGG-GGCCTTGGGCTGCCTCTTCTACAC-CTCAG-TAACCCATTTCCAGTAACC-AGTTCTCTCTGTCATTCGAT-TTATAGGATCTTACCTAGCAACATGGCCTGCTGCCTCTGCGAATTTAAAGTTGATATTGAGGTTATCTGCAAGACAATCAAACTGCATTGTAACACTGGATGTTACACTGGATGGACAAACACCACACATTGTCGTGAGTCT--CTTGGC---TGATA-------AATGAGT---T s canFam1.chr9 10744508 293 + 53642819 TACTCAACCCTACCCAACCATCATATGCCACAAGAATTCCTTTATGCAGAGCCCTGTGAAGACCTTGGCCTGAATCTTCTA----CTCAAGTAACCCCTTTACCACTAATATAAT-GCTCTGTGTTTCCAT-TTATAGGATATTACCTAGCCGTATGTCCTGTTGTCTCTGCCAACTCAAAAATAATATTGAGGTTGTTTGCAAGACAGTCAAGCTGCATTGTGACGGTGAATGT---------TTGACAAATGCCACACGTTGTGGTGAGTTTGAATTGCCTCATGATATATATATAATATTTATAt a score=6353.0 s hg17.chr17_random 1167492 36 + 2618010 tattttaag---tatttgtttttaaatt--------tatttttaatt s panTro1.chr19 15557964 36 - 82489036 tattttaag---tatttgtttttaaatt--------tatttttaatt s mm5.chr11 18516999 24 - 121648857 AATTTTGA------------TATAAA-----------AATTTTAACT s rn3.chr10 18070871 43 - 110733352 AATTTTGA----CATGTAATTTTAAACTGGTAAATATATTTTTAAAT s canFam1.chr9 10744971 41 + 53642819 tattttaaattttatttatgttttaatt------tttatttttaATC a score=764.0 s hg17.chr17_random 1167528 5 + 2618010 gatga s panTro1.chr19 15558000 5 - 82489036 gatga s mm5.chr11 18517023 5 - 121648857 GGTAA s rn3.chr10 18071397 5 - 110733352 GGTCC s canFam1.chr9 10745012 5 + 53642819 AACAA a score=27852.0 s hg17.chr17_random 1167533 66 + 2618010 --taaaattttaaGCTAATGATATAATTGCTT-----TATTTACTCATTCAGATTTA-AACTCCCTCAACTTCT s panTro1.chr19 15558005 66 - 82489036 --taaaattttaaGCCAATGATATAATTGCTT-----TATTTACTCATTCAGATTTA-AACTCCCTCAACTTCT s mm5.chr11 18517504 72 - 121648857 --CTAAATTTTAAACTAATGATAGACTTGTTTGTTTCCATCCATTCACTCAGAATAATAACTCCCCAAACTTGT s rn3.chr10 18071402 71 - 110733352 --CTAAAGTTTAAACTAATGATACACTTGTTCGCTTCCACCCGTTCATTCAGAATAA-AACTCCCTAAACTTCT s canFam1.chr9 10745017 70 + 53642819 TGATCAATTTTTAACTAATGATGTCACTGCAT---TATTTTTATTCACTTACAGTTC-AAACCCCTAAATTTCT a score=16072.0 s hg17.chr17_random 1167599 32 + 2618010 GAACTACTCCCTTGCTGGGAGTCAGGTTCTCA s panTro1.chr19 15558071 32 - 82489036 GAACTACTCCCTTGCTGGGAGTCAGGTTCTCA s mm5.chr11 18517576 31 - 121648857 GAATTTCTCCCTTA-TGGAAATTGGGCTCCCA s rn3.chr10 18071473 31 - 110733352 GAATTACTTTCTTG-TGGAAATTGGGCTCTTA s canFam1.chr9 10745297 32 + 53642819 GAACTATTCCTTTGTTATAAGTCAGATTCTCA a score=2917.0 s hg17.chr17_random 1167631 24 + 2618010 GTT--ATTATTACAAAATTTAATAAT s panTro1.chr19 15558103 24 - 82489036 GTT--ATTATTACAAAATTTAATAAT s mm5.chr11 18517607 24 - 121648857 GAT--GTTATTTCATTACTTAAAAGC s canFam1.chr9 10745329 23 + 53642819 GTTACATTATTAAATTAATTACT--- a score=-90.0 s hg17.chr17_random 1167655 2 + 2618010 GG s panTro1.chr19 15558127 2 - 82489036 GG s mm5.chr11 18517631 2 - 121648857 AT a score=4453.0 s hg17.chr17_random 1167657 11 + 2618010 AACTGTTCCAT s panTro1.chr19 15558129 11 - 82489036 AACTGTTCCAT s mm5.chr11 18517633 11 - 121648857 GCCTGTTCTAT s rn3.chr10 18072667 11 - 110733352 AGCTGTTCTAT a score=1689.0 s hg17.chr17_random 1167668 14 + 2618010 ATGCATAA--AGGACC s panTro1.chr19 15558140 14 - 82489036 ACGCATAA--AGGACC s rn3.chr10 18072678 16 - 110733352 ACACAAAAATAGCACC a score=11211.0 s hg17.chr17_random 1167682 79 + 2618010 AAGAGAAGGGAATGAGAAGGCTAGGGAAT--GACATTAACATCCACACCCTGTGTATTGTGCTCCCTACTTGGTGATTTGC s panTro1.chr19 15558154 79 - 82489036 AAGAGAAGGGAATGGGAAGGCTAGGGAAT--GACATTAACATCCACACCCTGTGTATTGTGCTCCCTACTTGGTGCTTTGC s mm5.chr11 18518652 71 - 121648857 AAGAGCAAGAGATGAAACGGGATGGAAA---------GATGTTCCCACTCTGTGAGCTGTACACTGTGCTTGGCACCTTG- s rn3.chr10 18072694 69 - 110733352 ---------AGACGAAAGGGGACGGGGAGCAGTAACCAGTGTTCACACTCTGAG--CCGTACACTGCGCTTGGCCCCTTG- a score=64543.0 s hg17.chr17_random 1167761 216 + 2618010 CCCCAGTGATAATTTCTTCATATAGTGCGATGTAGTTTGTAAGCTGGTTTTATATGCATGAGGTCTCAAGTACTCTCTGCCTTTTAGGACAAATGTAGATCCAGTTTTGTTT-TTGTTT----TTACAATTTTATAAG-------AGTACAA------------GTGATGCTG-------------TTTTATTTGAAGCCTGAGAGCTTCTGGTTCCATAACCAGAAATTG-CTCCCTGGCTCTTCTAATGGAA- s panTro1.chr19 15558233 216 - 82489036 CCCCAGTGATAATTTCTTCATATAGTGCGATGTAGTTTGTAAGCTGGTTTTATATGCATGAGGTCTCAAGTACTCTCTGCCTTTTAGGACAGATGTAGATCCAGTTTTGTTT-TTGTTT----TTACAATTTTATAAG-------AGTACAA------------GTGATGCTG-------------TTTTATTTGAAGCCTGAGAGCTTCTGGTTCCATAACCAGAAATTG-CTCCCTGACTCTTCTAATGGAA- s mm5.chr11 18518723 234 - 121648857 -TTCAGCGATCACATTTC--TCTCGTGCATGGCCGTCTG-AAGCTGGTTTTATGTACATTAGGTCTCCAGTGC-CCATGACTTATGGGGCAGATGGAGA-AGGGTTTGCTTT-TTGTTTCCTGTTGCACTTTAAAAAAAAAAAACAAAACAAAAATAACCCACTGTGATGCCT-------------TTTTATTTAGAATCCGAGAGTTCCTGGTTTTATAAGTAGCGCGTGCCTGCCTGGCTCTCCTACTAGAA- s rn3.chr10 18072763 214 - 110733352 CTTCCGTGATCACACACATGTATCATGCATGGCAGTCTG-AGGCTGGCTTTATCTACATCAGGTCTCAAATAC-TCCTGACTTAGGGGGCAGGTGGAAA-ATGGTTTTG-TT-TTGTTTCCTGTTGCATTGTTTTTAA----------------------CACTGTGATGTCT-------------TTTTCTTTAAAATCTGAGAGCTCTTGGTTTTGTAAGTAGCGAGGGCCTGCCCGCCTCTCCTAATACAA- s canFam1.chr9 10745352 219 + 53642819 CCCAAATGAAAACAT---------ATGCATCATAATTTGTAAACTAATTTCATATGTATCAGAACTCAGGTCCCCCTTGTCTTATATGACAGGTGGAGATATATTTTTGTTTATTGTTTGTTTTTACAAGTTATCAAG-------AGTAAAA------------GTGATGCTGATTTATAGATAAAGTTTATTCAGAGCCTGAGAGTTCCT-GTTCCCTAACCAGAAGCTG-CTGC------CTTCTTATGGATA a score=22436.0 s hg17.chr17_random 1167977 70 + 2618010 TGGAGGGCTTTTCCATTCTTAGAC-CATCCAACTCTGAACTTGCTCTGAATCTCAAACCTTTCT-----------ATTCACA s panTro1.chr19 15558449 70 - 82489036 TGGAGGGCTTTTCCATTCTTAGAC-CATCCAACTCTGAACTTGCTCTGAATCTCAAACCTTTCT-----------ATTCACA s mm5.chr11 18518957 57 - 121648857 -------------CAAGCCTAGAT-TAGCCAGCTCTGTATTTGTGTACACCGTCGGGTTTTCCT-----------ATTCACA s rn3.chr10 18004754 81 - 110733352 CAGAGAGCTCTT-CATGTCCACACTTGACCAACTCCCTACTTGTTTCCAACCTCAATCTTTTCTCTCACCAGATCATTCACA s canFam1.chr9 10745571 70 + 53642819 CAGAGCACTCTTCTATTCTTGGAC-TGTCCAACTCTGAACTTTTTCTGAATCCTCAGCTTTTCT-----------ATCCAAA a score=0.0 s hg17.chr17_random 1168047 5 + 2618010 GAACA a score=504.0 s hg17.chr17_random 1168047 2 + 2618010 GA s panTro1.chr19 15558519 2 - 82489036 GA s mm5.chr11 18519014 2 - 121648857 GA s rn3.chr10 18004835 2 - 110733352 TA a score=-513.0 s hg17.chr17_random 1168049 3 + 2618010 ACA s panTro1.chr19 15558521 3 - 82489036 ACA s mm5.chr11 18519016 2 - 121648857 TC- s rn3.chr10 18005192 3 - 110733352 ACA a score=-5446.0 s hg17.chr17_random 1168052 24 + 2618010 AATGCTCAAG--------------------------------------------------------------------TGCTTTCA----------------------------------AGAGTT s panTro1.chr19 15558524 24 - 82489036 AATGCTCAAG--------------------------------------------------------------------TGCTTTCA----------------------------------AGAGTT s mm5.chr11 18519018 21 - 121648857 ---GCTTGTG--------------------------------------------------------------------TGATTTTA----------------------------------ATAGTT s rn3.chr10 18005195 126 - 110733352 GGTGCACCAGCACACACAAGCACCCCCTGGGGAGTTTAGAGCTTTAATATACTACTACTATGAGAACTTACCATAATTTGTTTTTAATTTTAAAAGAGACCAGGGATGCAGCTCAGTGGTATAGTT s canFam1.chr9 10745641 24 + 53642819 AACACTCAGA--------------------------------------------------------------------TACTTTTA----------------------------------AGTATT a score=271502.0 s hg17.chr17_random 1168076 1129 + 2618010 TTTCTGTAGATTA-GGTTTATTAGCACCAACTTCATGACTTCTAAAATGTGACTGCTTTTATGTCCACATAGCTTGAATACAGGTATCTACCAGTGATATGGGGTGGATAATTAAT------AATGCTTGGCTACTTATATAAAGACAGAGTTGCTTATTATTCAAAA-GTTTTTTTTTTACCAACTAAATTATTCCCTTCTCCCCAAGA-GGTGGGCag-----------------aaaagcactgttaatctccttttacggacgaggaaaaacaagatcagaggtgctaagtgCTATAGCTTAGTGCC-AGGTCTTCTGTCCCCAATTCTGGGTTCTCCCCAAGCCCA-TGTTTCTCCTTTCTCACAATTT---TTACTTCTTCCTCTGACCC---TCAGCACCACCCAAAATACTTTTAATT---CTGGAAAAGAAACCCAGCTGCACACTG--------GCACAC----------TTGACCTTCATGCGGCCAGAAGCTTTGGATGGTTCCC-CAT---------CCAAAATATTAGAGATGAAATGAAAGCAAAG----TAAGCATCTGAC-AAAAGCTGCTTTTTCCCTTCTGCATTTTAGGACCTCAAGTAATGTTTATCCAGAAACTGCTATCATACCATAGATTCATTGTATATTTAACAACATAGGCATAC------CATCTGGCAAATTAAAAATCTCTTAACCTATACCCTGGATCTCT---GCCCAAATTTAAGAAAAGGACTAGGGTGG-GCACAG---------TGTTTTTTCCATGTCA----CTTCTTCTTTAATGGGGCTACGATATGTGGTAGCAGAGAATG-----------GGGTGGGTGGGTGGAGTGCATG---CCAGATGAGGATCTATCAGCAATGGGAGGGGGCCTCCACTTTAGCATCTCCACCCTGCTC-CTCTCAGAGGATAGCCTTTCATTGCATTCAGCTGTGATGGTAGTAAGAACACAGG---CACACTGAGGA----TGAGGAGGGAGGCTTGTGCTCTCTCTGCATCTGAGGCAGGACAGC----ACAG-----GGTAC----------GGAG---CAG----TCTGCAGAGAGGACAGCTCATCAG--------GGAAGC---ACTTGTCTTCC-ACCTTGGGCTTTGACTGAGCACTGGGCAATTGGCCCCTGGGGATCAACGA------AATAATCCTAAGCAGAGTTACTCTATGT-CACACTA-GGAATGTTCCAAGTAAGTAGCCATATTTTCAAAAGATGTCTTTTC s panTro1.chr19 15558548 1138 - 82489036 TTTCTGTAGATTA-GGTTTATTAGCACCAACTTCATGACTTCTAAAATGTGACTGCTTTTATGTCCACATAGCTTGAATACAGGTATCTACCAGTGATATGGGGTGGATAATTAAT------AATGCTTGGCTACTTATATAAAGACAGAGTTGCTTATTTTTCAAAACATTTTTTTTTTACCAACTAAATTATTCCCTTCTCCCCAAGA-GGTGGGCAG-----------------AAaagcattgttaatctccttttacagatgaggaaaaacaagatcagaggtgctaagtgCTATAGCTTAGTGCC-AGGTCTTCTGTCCCCAATTCTGGGTTCTCCCCAAGCCCA-TGTTTCTCCTTTCTCACAACTT---TTACTTCTTCCTCTGACCC---TCAGCACCACCCAAAATACTTTTAATT---CTGGAAAAGAAACCCAGCTGCACACTG--------GCACAC----------TTGACCTTCATGTGGCCAGAAGCTTTGGATGGTTCCC-CAT---------CCAAAATATTAGAGATGAAATGAAAGCAAAG----TAAGCATCTGAC-AAAAGCTGCTTTTTCCCTTCTGCATTTTAGGACCTCAAGTAATGTTTATCCAGAAACTGCTATCATACCATAGATTCATTGTATATTTAACAACATAGGCATAC------CATCTGGCAAATTAAAAATCTCTTAACCTATACCCTGGATCTCT---GCCCAAATTTAAGAAAAGGACTAGGGTGG-GCACAG---------TGTTTTTTCCGTGTCG----CGTCTTCTTTAATGGGGCTACGATATGTGGTAGCAGAGAATG-----------GGGTGGGTGGGTGGAGTGCATG---CCAGATGAGGATCTATCAGCAATGGGAGGGGGCCTCCACTTTAGCATCTCCACCCTGCTC-CTCTCAGAGGATAGCCTTTCATTGCATTCAGCTGTGATGGTAGCAAGAACACAGG---CACACTGAGGA----TGAGGAGGGAGCCTTGTGCTCTCTCTGCATCTGAGGCAGGACAGC----ACAG-----GGTAC----------GGAG---CAG----TCTGCAGAGAGGACAGCTCATCAGCTCATCAGGGAAGC---ACTTGTCTTCC-ACCTTGGGCTTTGACTGAGCACTGGGCAATTGGCCCCTGGGGATCAACGA------AATAATCCTAATCAGAGTTACTCTATGT-CACACTA-GGAATGTTCCAAGTAGGTAGCCATATTTTCAAAAGATGTCTTTTC s mm5.chr11 18433025 1017 - 121648857 TTTCTATATATTA-GGCATGTTGGCAAGAACTTCA----TTCCAAAATGTGACACTTTTCTTGTCTAAATAGCTTGAATGCAGATCTTTACCCTTAATCTAGG--GGATGGTAAATAGAATGAGCATTTGGCTCTTTATATAAATAAATAATTGC----------------------------------ATTATTCTCTTCTTCCTCAGA-AAT-GGCAA-----------------GTAAGCATTTC---CCTTCTTTTAT---------------ACATCAGAAGTATCAACTGCTGTCACTTCATGCCTAAGTCATCTCTTCCTAACTCTAGGCTGTTCATAGGCCCA-CAGTTTTCTTTTC--------------ATCCCCTCCTTGAGCCC---TCACTGCCGTGGAAAATCCTCATAGTTCTCCTGGGACAGAAACATAGCTACACAGTG--------GTACCC----------TTGACATTCCCACTATCAAAAGATTTGCGTTGCTCCCACAT----GAAGCTGAAAGAATGAGAAATGAAATGAGA--AAAG-------GCTCCAGAC-AAGAGTAGC-TCTGACCTCGTGCATTTTATGA-CTTAAGTAATGTTTATCCATAAATAGGCATTGTTCTGTAAGTGAACTGT----------ACATAGGAATG-------AATCCAGAAAATC-AGCATGCCTTTTCTTATACCTCGTGGCCCCCAATCCCAAATATAATGGAAGAACCAAGAAGATGCACAGAGAGAAGGATGCTCCTTCCATTCTG-----------------GGAGCTAGAATATGTGGCAAGAGAGCCCA-----------CGGGCAGACATTGGGACATCTA-GTCCAGATGTGAAT--------------AAGAAGCATCTGCTTTAGC-TCT--------CTC-CACTCAAAGGAT-GTCCCTCATCATGGGCAGCTGTGGGGGGATC---AGCACAGGGCACACAAAAAGAT----GGAGACAGGAAGCTTAATGGGCCTTTCAAACTGAGATGGGAGAGTAGGGATGG-----GAGCC----------TGAG---AAGGTTCTCTGCAGGTTGGTCAGACGTGCAG--------AGAGGTTGGCTTTGTCTTCAGGCCCTGGGCTCT--------ACTGGTCCATTGGCT-------------------------GTCTTAAACAGA--CATTCTGTGTGCACACTGTGGAATGTTACACCTATGGCGGCTACTTTGCCAACGACACTCT--- s rn3.chr10 18005342 1046 - 110733352 TTTCTATATATTA-GGCATGTTAGCTATAACTTCA----TTTCATAATATGACACTTTTCTTGTCTAAATAGCTTGGTTGCAGATCTTTACCCTTGCTCTAGT--GGATGGTAAATAGAATTAGCATTTGGCTGTTCATATAAATAAA-AATTACTTATTTTTAATAA----ATGTGTTTACCAATTATGTTATTCTCTTCTTCCCCAGA-AAT-GGCAG-----------------ATAAGCATTTC---TCTTCTTTTAT---------------ACATCAGAAGCATCAACTGCTGGCACTTTGTGCCTAAGTCATCTCACCCTAACACTAGGCTGTCCAGAGGCCCA-CAGTTTTCTTTTC--------------ACCACCCCCTTGAGCCT---TCACTACCACAGAAAATCCTCATTCT----CTGGGACAGAAACATAGCTGTACAGTG--------TTAGCC----------TTGTCCTTCCCACTGTCAGAGGATCTGCATTGTTCCCACAT----GAAGCTAGAAGAACAAGAAATGAAGTGAGA--AAAG-------GCAGCAGAC-AAGAGTAGC-TCTGACCTTGTGCATTTTATGA-CTCAAGTAATGTTTATTCATAAATAGCTATTGCTCTGTAAATGAACTGG----------ACATAGGAATG-------AACCCAGAAAACT-GTCATGCCTTTACCTATACTTCATAGGCCCCAGTCCCAAATATAATGGACGAAGCAGGAAGATGCACAGAGAGAAGGATGCGCCTTCCACTCTG-----------------GGAGCTGGAATATGTGGCACCAGAGCCCA-----------TGGGAAGAAATTGGGACATCCA-ATACAGATGTGACT--------------GAGAGGCATTTGCTTTAACATTTCTGCCCTCTTCACACTCAAAGGGT-GTCCACCTTCATGCTCAGCTCTGGGTGTATC---AGCACAAGG--CACACTAAGAAGAT-GGAGACAGGAAACTTAATGGGCCTTCAGAT-TGAGATGGGAAACT----GTAGGTATAGGAGC----------GGAG---AAGGTTCTCTGCAGGGTGGTCAGATGTGCAG--------AGAAACCGGCTTTGTCTTCAGGCCCTGGGCTCT--------ACTAGTGCATTGGCT-------------------------ATCTTAAATAGA--CATTCTGTGTGCACCCTGTGGGATGTTTCAATTAGGGGGTTA-CTTTGTCAATGA--------- s canFam1.chr9 10745665 1118 + 53642819 TTTCTGTATACTATGTTTTATTGGCACTAACTTCATGACTTCCAAAATGTG----CTTCTGCACCCAGATAGCTTGAATATGGTTCCCTATCAATGATCTAGGGTACATCATAAAT------AACACTTTGCTACCTCTGTAAATACAATGTTGCTTATTTTTCAAAACAATTTTTTACTA--------ATTACTCCCTTATCTCTTAGAGGGTGGGCAGAATAGGCATGccctataataggcattag---cctccttttacaggtgaggaaaaattagatcagaggtgttaagtactgttgcctaGCACTCAAGTGTCCCGT-------TTAGGGCTCTCTACAAGCCCGTTGCTCCTCCTTTCTTGTGACCTTTATTACCTCCTCCTCTGACTCTCATCAACACCGCTGAAAATACTTCTAATTCTTCTGGAAATGAAACTCGGTTGGATGATACTGTGCATGTACACAAGCCATATGCTGACTTTCATGTAGTGGGAAGCTCTGGATGGTACCCTAATAACTAAAGCTAGAAATATTAGAAATGAAAGTGAAGTATATTTCTTCACATTCTGACAAAAAATTTCTTTATCCCTTCTGCATTTTAAAACCTCAAGT---------------------ATTATTCCATTGATTTATCGAACATTCC---ACATTGGCATATCTCTCATACCTGGAAAATC-------TCTTAGCCTACACTC---GTTCCC---TGCCCAATTTAAGCAAAGAGCCAGGGTGG-ACTTAG---------TGCTTTTTTTCTGTCTAGAGCTTATGTTTTGTGTGAGCTGCAATATATGGGAGCAGGGACCAAGCATGGTAATTGATGGGTAGATGGAGAGGGCATGTCCAGATGAGGCCCTACTAG----------------------------------------------CAGTGGGT-GTTT----TCATGGGCATCTGTGATAGTAGCAAGAAAACAAG---CACACTGAAGAGATAGAAGGAGGAAACCCCCTGCTCCCACTGCATCTGAAGCAGTACAGG----ACAG-----GGTATATGAATACCAGGAGTCACAGTAGATTTGCAGA-----CAGTTTAGCTG--------AG----------TGTCTTCC-AGACTTGGCTTTTCTTAAGTACTAGATAATTGGCCCTTGGAGACCAAGGATTATGGAATAATCCTAAATGTAGTCATT-------CACGTTGTGAAAGGTTCTGAAGAAATAACCA---TTTAAAAAAATACCCTTTT a score=185956.0 s hg17.chr17_random 1169205 391 + 2618010 CTCCTTTTGTTGTTGCCATTTCATAGATTTA-GGCTTGGGTGTGTGTTTCTCCTCTCTGAATGGCAC----TCTAATGTTTGCTGACTCCTACTTTGTGTGACTGGGGCATACAGCTGTGGACTGATGCATGCCGTTCCATTATCTTT-CATGATC-AAAGCAGTCTCTT--TTTTTTGACAGGTGAAGAAGCATCTGTAGGGAATCCAGAAAGAGTGTTCATGAAGGTGTTACAAGCCCAGAAGAAGCACATGAGCATTGAGCTGACTACTGAGCCGGAGGCAGCCT---CAGACAGCAGTGGCATCAACTTGTCAGTCTTTGGGAGTGAGCAGCTAGACACTTATGATAAGAGTGATGTTATCACTGCGCTAAATTACATCTTGCCTTATTTCTCAGCAGG s panTro1.chr19 15559686 391 - 82489036 CTCCTTTTGTTGTTGCCATTTCATAGGTTTA-GGCTTGGGTGTGTGTTTCTCCTCTCTAAATGGCAC----TCTAATGTTTGCTGACTCCTACTTTGTGTGACTGGGGCATACAGCTGTGGACTGATGCATGCCGTTCCATTATCTTT-CATGATC-AAAGCAGTCTCTT--TTTTTTGACAGGTGAAGAAGCATCTGTAGGGAATCCAGAAAGAGTGTTCATGAAGGTGTTACAAGCCCGGAAGAAGCACATGAGCATTGAGCTGACGACTGAGCCGGAGGCAGCCT---CAGACAGCAGTGGCATCAACTTGTCAGTCTTTGGGAGTGAGCAGCTAGACACTTATGATAAGAGTGATGTTATCACTGCGCTAAATTACATCTTGCCTTATTTCTCAGCAGG s mm5.chr11 18519439 396 - 121648857 CTCTTTTTGTTATTCCCATTTCATAGGTCTGCAGTGTGGATTTGTTCTTCTCTCCACGAATGGTCACTCCATCCAGGATTTGCTGGTCCCTAATTTATTCAATAGGGTTGAATGGTTGTGAACTGAGGAAGGGGCTGCTAGTGTTCTC---TGACCAAAAGCAATCTCTT-GTTCTTTGACAGTT---AAAGCATCTATAGGGGACCCAGAAGGAGCGTTCATGAAGGCATTGCTGGCCCGGAAGGAGAACAGCAGAGCTGAGCTCACTATTGAACCAGAAAAGAGTTATGCAGACCAAACCAATCTTGGCTCTTTGGGCCTCATGAATGAACAGCTTGACTTTAACGATGAAAGTGATGTTATTAGTGCCCTAAATTACATATTGCCGTATTTCTCAGAGGG s rn3.chr10 18073416 390 - 110733352 CTCCTTTTGTTTTTCCCAT------GGTTTACAGCATGGGTTTCTTTTTCTCTCCACTAGTGGTCATTCCATCCAGTATTTGCTGGCCCCTAATTTATTCGATAGGGGTGAATGGTTGCAGGCTGGGGAAGGGGCTGCCAGTATTCTC---TGACCAAAAGTAATCTCTT-GTTCTTTGACAGCT---ACAGCATCTATAAGGAACCCAGAAGGAACATTCATGAAGGTGTTGCTGGCCCGGAAGGAGAATACCAGAGCCGAGCTCACTATTGAACCAGAAAGGGTCCACTCAGACAGAAATGATCCTAGCTCTTCAGGCCTCATGAATGAGCAGCTTGACTTTAACGATGAAAGTGATGTTATTAGTGCCCTCAATTACATATTACCGTATTTCTCGGAGGG s canFam1.chr9 10746783 391 + 53642819 CTCCTTTTGTTGTTGCCAA--TATAGGTTCA-AGTTTGAGTTTGTGTCCTTGAT-----AATGGTAC----TCAGATATTTGCTGGTTCTTAATTTTTATGACTGGGATGTATGACTGCGGACTGACAAAAACTGTGCTATCAGCCTTTCATTATCAAAACTAGTCTCTTCTTTTTCTGACAGATGAAAAAGCATCTATAATGAATGTAGAAGGATCATTCATGAAGGTATTAAAAGCCCGGAAGAAGAGTACCAGTACTGAGCTGACAATTGAGCCAGAGAAGGCATCCTCAGACAAAAATGGCATCGGTCTGTCAGCCTTTATGAATGAGCAGTTAGACTTTAATGATGAAAGTGATGTTATCAGTGCGCTGAATTACATATTACCTTATTTCTCAGAGGG a score=137341.0 s hg17.chr17_random 1169596 317 + 2618010 AAATCT---AGATGCGGAATCAATGTTGTTACCATTCATTAAACTGCTTTTTTCAAATGTGCAAGATGG-AGATAAGCTCCTG----TTTTGAAAAACAATACAAAGAGCCCCTTGTTTCAACCTGCATCCAA------CAATTCAACTTA----TGAAAATAAATTGAGAAAGGTG------------------------TATTTGCTAGAAAAGATG---------------TTAGATGCAGAAATACAAGAAAAAAATCGATGAAGTTAAAAGGGAAGAAAAAACTGCCATGCTTATGCAG---TCCAGCCTTCTAGGTAACAAATTTAAAT-------------------GCCAAATATTTGAAAAGAAATTAGAAACTGTCCAACCACAGG s panTro1.chr19 15560077 317 - 82489036 AAATCT---AGATGCGGAATCAATGTTGTTACCATTCATTAAACTGCTTTTTTCAAATGTGCAAGATGG-AGATAAGCTCCTG----TTTTGAAAAACAATACAAAGAGCCCCTTGTTTCAACCTGCATCCAA------CAATTCAACTTA----TGAAAATAAATTGAGAAAGGCG------------------------TATTTGCTAGAAAAGATG---------------TTAGATGCAGAAATACAAGAAAAAAATCGATGAAGTTAAAAGGGAAGAAAAAACTGCCATGCTTATGCAG---TCCAGCCTTCTAGGTAACAAATTTAAAT-------------------GCCAAATATTTGAAAAGAAATTAGAAACTGTCCAACCACAGG s mm5.chr11 18519835 320 - 121648857 GAATCTGGAAGACGTAGTATCGACATTGTTACCATTCATTAAACTCCTGTTTTCCAATATACAAAATGG-AGATAATTCACTGGGACCCTTCCAAAATGATACAAAGAGCCTTACTCTTAAATCAGTACCTAAGGCTAGTAAGTTGGCTTA----TAAAAACAAAGTGAATAAGCTT------------------------TATTTTCTAGAAAACCTG---------------CTAGATG-------------AAGAAATCAATGAGGTTAAAGAGAAAGAGAAAACCGCCATGCTTGTGCATCACTCGGGCCGTTTAGATCCCAAATTTAAAC-------------------GACAGATATTTGAAAAGCGATGGGAACCTGCCCGGACAGGGA s rn3.chr10 18073806 311 - 110733352 GAATCTGGAAGATGTGGTGTCGACATTGCTACCATTCATTAAACTCTTGTTTTCTAATATACAGAATGG-AGATAATCCACTGGGACCCTTCCAAAACGACACAAAGAGCCTTACTCTTAAATCAGTACC---------TAAGTCGCCTAA----CAAAAATAAAGTGAATAAGCTT------------------------TATTTTCTAGAAAATCTG---------------CTAGATG-------------CAGAAATTGATGATGTGAGAGAGAAAGAGAAAACCGCCATGCTTGTGCAGCCGGCGAGCCATTTAGATCCCAAATTCAAAC-------------------GAGGAATATTTGAAAAGAGGTGGGAACCTGCCCGGGCAGAGG s canFam1.chr9 10747174 306 + 53642819 AAATGTAGAAGATGTAGAATCAACATTACTACCATTCATTAAAACTCTGTTTTCAAATGTTCAAGATGGAAGACAAGCCTGTGGGTTACTTGAAAAACAACACAAAGAGCCCTTCTCTTGAACCTGGACCCAA------CAATTCAACTTA----CAAAAATAAACTGAGGAAACTC------------------------TCTTTCCTGGAAAATTTG---------------TTAGATGCAGAAATTCAAG-AAAAAATTGATGAGGTAAAAAAGAAAGAAAAAACTGCCATGCTTATACCT---CCCGGGATTTTAGGTCCCAAATTT-------------------------------------AAGAAATTGGAAACTGCCCAAGGACAGG s danRer1.chrUn 99578703 351 - 367113659 AAATTT---GGATTTGT-----ACTGTATTATTAGTTATTGAATAACTTTTTTCAAATGTACATATTTG---------TTTTA----TTTTATCAAATTTT---AATAACATTTCTTTCAAATAA------AA------AAATGTAACTTAGAGCTGCACTTTTGGTGAGAAAGTGTTCATTTGTTGTGACTAAACTTCAGTATTATTTAAAAATTGTGACTTCCAAATTTTTCTAAAACAAACAAACAAAAAAAAAAGTTTTGTGTAGCCAAAAAAATAAATAAACAAAACAAATATAAACAT-------GCTTTGGAGGAAACATATTTTAACATATTTTAAAAATGTTTTAATCAAACAGATAACCATAAATTGTAAATTGT--AAACACAGG a score=619034.0 s hg17.chr17_random 1169913 1414 + 2618010 AAAACAGCCTGGCAAAGGTTCAAAGTGTAGGCAAAAACCTGCAGAGAGTGAACAGAGTCCTCATGGGCCCAAGGAGCATCCAGAAAAGGCCCTTCAAAGCGGTGGGAAAGCAGAGTATCAGGAGGGAACAGGGTGCCCAGGCATTTGGGGAGAATGCTGCCAAAGAAAA---------------------AAGGCTCGGGAGTCCAGCCCCAAGGGAGCTGGAATAGCCTCACATAGTGCAGGGGCCCGAGAACGTAGCGGGAAACGCCGTCTACACCAAGCCTTCATTCACCCAAGAGCAGAAGCCAACAGTCTCCTCTTTGCTGAAACCCTTCTCCATGGGCATGCCTTCTGCCTTCCACAACTGCAAAAGCCCTACCTCAGGTCATAGACAGATTGAAAGACTTAGCCTACACCATTTTAATTTTAGAAAATGCAAAGGCTAGAGTTAAAAAATATGAAGGCTGCTAAACGAGTCGTACATTCCAG-AAAAAAATACCACTTTCATAAAACTCACTCCCGTGTGGCCCACAGAACACCCAAGGCCAAAAAGATTAGAAAATTGAGAAAGAAAAGTT--ATCTC-AATAGACTGATGCTCGCAAAGAGGCCG------CCGTTCTCTGCAGTGAAGAGCCTCATAAATTCCCCTTCACAAGGGGCTTTTTCATCCTCAGGAGACCTGAGTCCTCAAGAAAACCCTTTTCCAGAAGTATTTGCTCCTTCAGAATGTTTTATAGAAAACACTACTGTAAAAAACACAACTGCAAGAAATGCCTCTGAAGAAAACGTTTTTATGGAAAACACTACTATGCCAGAAGGCACCATCTCTGAAAACACAAACTACAATCATCTTCCTGAG---------GCAGATTCCCACTAG--GACTGCATTCAACTTAGAGCCAACTGTTAAACAAAC---TGAGACAAAATGGG-AATACAACAACTTGGGCACTGACCTGTCCCCCGAGCCCAAAAGCTTCAGTTACCCATTGCTCTCATCCCCAGGTGATCAGTTTGAAATTCCGCTAACCCATCAACTACAGTCCGTCATCCCCAACAACGATGTGAGAAGCTTCATTTCTCATGTTATCTGGACCTTGAAGACGGACTGCTCCGAGACCTATGTGCAAGTGACCTGTGCCAAGCTCATCTCCAGGACAGGCCTCCTGATGAGGCTTCTCAGTGAGCAGCAGGAAGTAAAGGCGTCCAAGGCAGAATGGGATACAGACCAGTGGAAAACTAAGAACTATATTAATGAAAGCACAGAAGCCCAGAGTGAACAGAAAGAGCAGAAGTCGAGTGAGGTGAGGACCACACA-GAAACATGAG-ACCCAGACTTTCCCATCA-TTTAGCATATGCCAGGAAAGTGCCCACACAGGAGAACCTGGGACTCCCAGGCCATAGTTTGTCTTGGCCATGTAACTTT-----GGCCATGACAGTGATCTCCCAC s panTro1.chr19 15560394 1415 - 82489036 AAAACAGCCTGGCAAAGGTTCAAAGAGTAGGCAAAAACCTGCAGAGAGTGAACAGAGTCCTCATGGGCCCAAGGAACATCCAGAAAAGGCCCTTCAAAGAGGTGGGAAAGCAGAGTATCAGGAGGGAACAGGGTGCCCAAGCATTTGGGGAGAATGCTGCCAAAGAAAA---------------------AAGGCTCGGGAGTCCAGCCCCAAGGGAGCTGGAATAGCCTCACATAGTGCAGGGGCCCGAGAACATAGCGGGAAACGCCATCTACACCAAGCCTTCATTCACCCAAGAGCAGAAGCTAACAGTCTCCTCTTTGCTGAAACCCTTCTCCATGGGCATGCCTTCTGCCTTCCACAACTGCAAAAGCCCTACCTCAGGTCATAGACAGATCGAAAGACTTAGCCTACACCATTTTAATTTTAGAAAATGCAAAGGCTGGAGTTAAAAAATATGAAGGCTGCTAAACGAGTCGTACATTCCAGAAAAAAAATACCACTTTCATAAAACTCACTCCCGTGTGGCCCACAGAACACCCAAGGCCAAAAAGATTAGAAAATTGAGAAAGAAAAGTT--ATCTC-AATAGACTGATGCTCACAAAGAGGCCG------CCGTTCTCTGCAGCGAAGAGCCTCATAAATTCCCCTTCACAAGGGGCTTTTTCATCCTCAGGAGACCTGAGTCCTCAAGAAAACCCTTTTCCGGAAGTATTTGCTCCTTCAGAACGTTTTATAGAAAACACTACTGTAAAAAACACAACTGCAAGAAATGCCTCTAAAGAAAACGTTTTTATGGAAAACACTACTATGCCAGAAGGCACCATCTCTGAAAACACAAACTACAATCATCTTCCTGAG---------GCAGATTCCCACTAG--GACTGCATTCAACTTAGAGCCAACTGTTAAACAAAC---TGAGACAAAATGGG-AATACAACAACGTGGGCACTGACCTGTCCCCCGAGCCCAAAAGCTTCAGTTACCCATTGCTCTCATCCCCAGGTGATCAGTTTAAAATTCCGCTAACCCATCAACTACAGTCCGTCATCCCCAACAACGATGTGAGAAGCTTCATTTCTCATGTTATCTGGACCTTGAAGACGGACTGCTCTGAGACCTATGTGCAAGTGACCTGTGCCAAGCTCATCTCCAGGACAGGCCTCCTGATGAAGCTTCTCAGTGAGCAGCAGGAAGTAAAGGCGTCCAAGGCAGAACGGGATACGGACCAGTGGAAAACTAAGAACTGTATCAATGAGAGCACAGAAGCCCAGAGTGAACAGAAAGAGCAGAAGTCGAGTGAGGTGAGGACCACACA-GAAACATGAG-ACCCAGACTTTCCCATCA-TTTAGCATATGCCAGGAAAGTGCCCACACAGGAGAACCTGGGACTCCCAGGCCATAGTTTGTCTTGGCCATGTAACTTT-----GGCCATGACAGTGATCTCCCAC s mm5.chr11 18520155 1329 - 121648857 AAGACAGTCTTGCAGAGATCGAGAAGGCAGAGAGACAGCTCCACAGCATGAGCAGGGTCCCCAAGGAGACAGGAAGCATACAGAAAAGGCACTTCAAGGATGTGAGTGGCAAGAGCCTGTGGAGCAAGCAGAGCGTCCAGACCCCTGTGGAGAGCATCTCCAAGGACAG---------------------GCAGCTCGGGAGCCCACCCTCAATGGAGCTGCAGCAGCTCGGCCTGGAGCAGAAGCCCAGGGAGTTAGTGGGCTATTCCTTCCCCTCAGAGCCCTTGCTCCCAAAGGAGCACAGGGGAGAGCTCTCTTCTTCCCCAGATCTGCCCCTGCTGGACAAGGCTCCC----------ACTACAAACTCTCTACCTGACTTCATAGACAGACGGAAAGACTTGTCTTACACCATTTACGTTTTAGAAAGTGCAAATGCTAATGTGAAGAGA-GCGAAGGGTTCTAACCCAAGTTTACAACCTGA-AG-------------------------------------------------CGAGGC-------ATCGGAACCTTAGGAAGAAAAA-----ATCTC--ATTTCCAGTTGATTGCAAAGAGGCCG---GCAGCATCCTCTGCAGTGAGGAGCCTGATAAGTTCCTCTGCACGAGGGGTCTTTTCATCTTTAGGAGACCTGAGGTACCCAGAAAGGCCCTTTTCGGAATTATATGTTGCTCCAGAGCCTTCTACAAAAAAGCCTCTTGAAGAAAATCGGGCTGCAACAGATAATGTTGAAGAAAATAATCTCAAACAAATTGTCACTACGCCTGAAGAAACTACATCAGAAAATAAA------------CCTCCTGAGAATCCCACTGCAGATTCTAATGTGTCGACGACATCCAACTTAATTTCAACTGTTCAGCAAACCAGCAAGCCACAGTCGG----TCTTCACTGTGGGGGCTGATACACATGCCGATCTCACTGACGTTGCTTACCCATCGCTGATGTCCCCAGGAGAACAGTTTGAGTCTCATCTCAACCAGCAGTTGCTGCCCCTCATCCCCAACAAGGATGTGAGAAGGCTCATCTCTCACGTTATCAGGACTTTGAAGATGGACTGTTCTGACACTCGTGTGCAAATGTCCTGTGCCAAGCTCATCTCCAGAACAGGCCTCCTGATGAAGCTCCTCAGCGAGCAGCAAGATTTCAAGCTGTCCAGGGCCGACTGGGATACAGACCAGTGGAAAACTGAGAACTACATCAACGAGAGCACAGAAACCCAAGGCGAACAGAGGAGTCTGGAACCAAGTCAGGTGAGGACAGGGCT-GGGACAGGAGCCCCCAGTCTCCTCTGTCAGTTCAGCA---------GAAATGACCA-------------GGGGCTCCCAGTCCAGATCTTCTGCTGGTCACATAACGCTAACACAGCCAAGACAGTGA-ATCCCAC s rn3.chr10 18074117 1350 - 110733352 AAGACAGTCTTGCAGAGATCGAGAAGGCAGAGAGACGGCTCCTCAGCATGAACAGGGCCCCCGAGGGGACAGGAAGCTTAAGGAAGAGGCACTTCAAGGAGGTGAGAGTCAAGAGCCTGGGGAGCAAGCAGAGCGCCCAGACACCTGTGGAGAACAGCGCCAAGGACAGACACCTGTGGAGAACAGCGCCAAGGACAGGCAGCCCAGCCTCAGTGGAGCTGCAGCAGCTCCATCTGGAGCAGAAGCCCAGGGTGTTAGTGGAAAATTCCTTCCCTTCAGAGCCCTTACTCGCAAAGGATCATGGGAAGGAACTCTCTTCCTCCCTAGGACCGGCCCTGGTGGACAAGGCTCCT----------GCTCCAAAATCGCTACCTGAGTTCCTAGACAGACGGAAAGACTTGTCTTACACCATTTTTGTTTTAGAAAGTGCAAATGCTAATGTGAAGAGA-GCAAAGGGTTCTAACCCAAATTTACAACCTGA-AG-------------------------------------------------AGAGAC-------GTGGAAACCTTAGGAAGAAAAA-----ATCTC--ATTTCCAGTTGATTGCAAAGAGGCCGGTGGCAGCATCGTCTGCAGTGAGGAGCCTGGTAAATTCCCCTGCACAAGGGGTCTTGTCATCTTTAGGCAACCTGAGTTACCCAGAAAGGCCCTTTTCAGAATCATATACGGCTTCACAGCCTTCTACAGAAAAGCCTCTGGAAGAAAATCAGGCGGCAACAGATAATGTTAAAGAAAATATTCTCAAACTAACCGTCACTGTGCCTGCAGAAATTAAATCAGAAAATAAACCTCGTGAGAAACCTACT------------ACAGGTTCT-ATTGT--GTCTACATCCAGCTTAGTTCCAACCGTTCAGCAAACCAGCAAGCCACAGTCAG----ACTTCACTGTGGGGTCTGATACGCATGCTCCTTCCACAGAAGCTGCTCACCCATCGCTCATGTCACCAGGAGAACAGTTTGAATCCCATCTAAACCAGCAACTGCGGCCCCTCATCCCCAACAACGATGTGAGAAGGCTCATCTCCCACGTTATCAGGACTTTGAAGATGGACTGCTCTGACACTCGTGTACAACTGGCCTGTGCCAAGCTCATCTCCAGAACAGGCCTCCTGATGAAGCTTCTCAGTGAGCAGCAAGATTTCAAGTTGTCCAGGACTGACTGGGATACAGACCAGTGGAAAACCGAGACCTACATCAACGAGAGCACAGAAGCGCAAGGTGAACAGAAGGGTCTGGAACCAAGTCAGGTGAGGACAGCACC-GGGACAGGGGGCCTCAGTCTCCCCAATCAGTTCAGCA---------GAAATGACTT-------------GGGGCTCCCACTCCAGATCTTCTGCTAGCCTCATAACTCTAGCCCAGCCAAGACAGCGA-TTCCCAC s canFam1.chr9 10747480 1415 + 53642819 AAAAGACCCTTCCCAAGGCTAAGAATTTACGGAAGAGGTGGTTTAGAAAAAACAGTGTTCTCAAGGGCCCCAAGGACCTACAGAAAAGGCACTACAAGGAAGTGGACGTTCAGAGCACCCAAGGGAAACAGAGTGCCCAGTCATTTGTGAAGAACATGGCCAAAGAAAG---------------------AAGGCTCAGTGGACCATCCCCAAGGGAGCCGGAGGAGCTTCACATGGCCCAGAGGCCCAGGAAATTAGTGGGAAACTCCGTCCACACAGAGTCTTCATTCATAAAGGAGCACAAGGCAGCAGCCTCTTCTTTCCCGAAGCAAAACATAATGGGCAAGCCTTCT-GCCTCCACTGCTCCAAAATCCCTACCTAAGGTGAAAAACAAATCAGAAGACTCAACCTACCCCATTGTTGTTTTAGAAGATGCGAATGCTAGAGTTAGGGAA-ATGGAGGCTTCCAGACCAGTCTCGCATTCTGG-AAAAAAGTATATTTTCCATAAAATTCGCTCACGTATAGTCCAAAGAACACCCAAGACCAAAAAAAGTAAAAAGTTCAGAAAGAAAAACTCACTCTCGAATAGATTGATGCCTGCACAGAGGCCT------CCATTGCCTGCCGTCAGGAGCCTCATCGATTCCCCTTCACAGGAGGCTATTTCATCTTCAGAAAAACGAA---TTCAGGAAAATCCTTTTCCAGAATTATTTACTCTTTCAGAACCTTCTAAAGAAAACACTACTGTAGAAAACACTACTGCACAGAATGCTTCTGAAGAAATTATTTCTCCAGGAAGCACTACTGTATCAGAACAAACTCCCCCTGAATTCACAAACCGTAGGAATCTTTCCAAT---------ACATATTCT-ACTAC--CACCAGAGACAACTTTGTGCCGACTGTTAAACAAACCAATGAAACACAATGGGGAATACCACAACTTGGTCACTGACTTGCCCCCAAAGCCCACAGGCTTCAGTGTTGCAAAGCTCTCATCCGCAGGTGATCTATTTGAAATTCAGCTAAACCAGCAGCTACGGTCCCTCATCCCGAATAATGACGTGAGAAGGCTCATTTCTCATGTTATCCGGACTTTGAAAATGGACTGCTCTGAGACCAATGTGCAACTGGCCTGTGCCAAGCTTATCTCCAGAACAGGCCTCCTGATGAAGCTTCTCAGCGAGCAGCAGGAAGTAAAGGTGTCCAAGGCAGAGTGGGATACAGACCAATGGAAGACTGAGAACTATATCAATGAGAGCACAGAAGCCCAGAGTGAACAGAAAGAGCAGAAGTCAAGTGAGGTGAGGATAACTCCTGAAAGATGGG-GTCTGAACTTTT-AGTCAGTTTAGGACATGCAATTAAAGCACCCATGCACAAGGACCAGGGCCTCCCAGTCTGGGTCTTGTCTTAGCCAT-TAATGTT-----GGCTGAGACAGTGATCTGCCAC a score=4192.0 s hg17.chr17_random 1171327 12 + 2618010 TTTGTTCATTTA s panTro1.chr19 15561809 12 - 82489036 TTTGTTCATTTA s mm5.chr11 18521484 12 - 121648857 TGTGCTTCTCTA s canFam1.chr9 10748895 12 + 53642819 TTTGCTCATTTA a score=1757.0 s hg17.chr17_random 1171339 7 + 2618010 GAGAGTG s panTro1.chr19 15561821 7 - 82489036 GAGAGTG s canFam1.chr9 10748907 7 + 53642819 GAGAATG a score=29590.0 s hg17.chr17_random 1171346 333 + 2618010 AAACAGATTAGTGCACAGGATGAACTGTAggctgggcatggtagctcacgcctgtaaacccagcactttgggaggccgaggtgggtagatcacttgaagtcagaggagtttgagaccagcttgaccaatatagtgaaaccctatcttcacaaaaaatacaaaaattagttgggtgtggtgacttgtgcctataattccagctactctagaggctgaggtgggaggatcacctgagcccagggaggtcgagtctgcagtgaactgtgatcacaccactgtactccagcctgggtgacagagtgagaccctgtc---tcaaaaaaaaaaaaaaaagaa- s panTro1.chr19 15561828 337 - 82489036 AAACAGATTAGTGCACAGGATGAACTGTAggccgggcatggtagctcacgcctgtaaacccaacactttgggaggccgaggtgggtagatcacttgaagtcagaggagtttgagaccagcttgaccaatatagtgaaaccctatcttcacaaaaaatacaaaaattagctgggtgtggtgacttgtgcctataattccagctactctagaggctgaggtgggaggatcacctgagcccagggaggtcgagtctgcagtgaactgtgatcacaccactgtactccagcctgcgtgacagagtgagaccctgtctcatcaacaacaaacaaaaaagaaC a score=3665.0 s hg17.chr17_random 1171679 26 + 2618010 CCTGTAAGCTACTCAACTAGAATACT s panTro1.chr19 15562165 25 - 82489036 CCTGT-AGCTACTCAACTGGAATACT s canFam1.chr9 10749033 26 + 53642819 CCTATACGCCACTCCACTGAAAGAAT a score=2091.0 s hg17.chr17_random 1171705 6 + 2618010 GGGGTT s panTro1.chr19 15562190 6 - 82489036 GGGGTT s rn3.chr10 18076016 6 - 110733352 GGGATG s canFam1.chr9 10749059 6 + 53642819 GAGGTT a score=125968.0 s hg17.chr17_random 1171711 265 + 2618010 ----------TT--GAAAAGTTAGCTTTC----ACTCttttttt---------------------aattgttctttccttttttctttttttttttttttAGCTCACGAAAGAAGTTCCAGGATATGGCTATAACAACAAACTAATCTTGGTGATATCTGTGACTGTAATACTAACGATTTTGATTCTAATTTTTTGTCTTATTGAGGTAAG-GACAATA-----ATTAATTCAGGTTTTCAGAAAGCAATCCTGTCTTTGT-GTGGATTCAGAACCCACAAACTGAAAACCAAAGCCACTTCCCCACT---------- s panTro1.chr19 15562196 263 - 82489036 ----------TT--GAAAAGTTAGCTTTC----ACTC-TTTTTT---------------------AATTGttctttcctttttt-tttttttttttttttAGCTCACGAAAGAAGTTCCAGGATATGGCTATAACAACAAACTCATCTTGGCGATATCTGTGACTGTAATACTAACGATTTTGATTCTAATTTTTTGTCTTATTGAGGTAAG-GACAATA-----ATTAATTCAGGTTTTCAGAAAGCAATCCTGTCTTTGT-GTGGATTCAGAACCCACAAACTGAAAACCAAAGCCACTTCCCCACT---------- s mm5.chr11 18522098 288 - 121648857 ----------TT--GAACAATTAGCCTTCTCCTTCTCTCTTTTTATTTTATGATTT-GATAACCGAAATGTCCATTTGTCCATT-TATCTTGTACTTTTTAGCTCACAAAAGCAGTTCCAGGATATGGCTACAACAACAAGGTCATCTTGGCGATATCTGTGACCGTCATAGTGACAGTTTTGATTATCATTTTCTGTCTCATTGAGGTAAG-GACATCA-----GTACATGCTTGGGTCCAGAATGT-GCCCTGTCTGTGTAGTAGATTTAGAACCTGGAAACTGGAAACCAGCGTCACTTACCCTCT---------- s rn3.chr10 18076022 280 - 110733352 ----------TT--AAACCATCAGCCTTT----GCCTTCCTTTA------TGATTT-AACAG---AAATGTCCGTCTGTCCATT-TATCTTGTACTTTTCAGCTCACCAAAGCAGTTCCGGGATATGGCTACAACAACAAAGTCATCTTGGCAATATCTGTGACCGTCGTCGTGACCGTTTTGATTATCGCTTTCTGTCTCATTGAGGTAAG-GACAGCAGCATGGTGTGCCCGTGGGTCCAGAGTGT-GCCCTGTCTGCACAGTAGACTTAGAACCTGGACACTGGAAGCCAGAGCCTCTTACCCCTC---------- s canFam1.chr9 10749065 298 + 53642819 TTAGAGTAGCTTAAGAATAGTTAGCTTTC----ATCCTTTTCTT------TGATTTCTAAAA---AAttgttctttgttttttg-ttttttgt-tttttTAGCCCACAAAAGAAGTTCCAGGTTATGGCTATAACAACAAACTCATCTTGGCAATATCTGTGACTGTAGTAGTAATGATTTTGATTATAGTTTTCTGTCTCATTGAGGTAAGAAACAACC-----ATTAATTCAGATTTCCAGAAAAT-CTTTTGTCTTTATAATAGATTCAGAATTTACAAACTTAAAATCAAAGCCACTTTCTCACTTACTGATACT a score=1146.0 s hg17.chr17_random 1171976 2 + 2618010 TG s panTro1.chr19 15562459 2 - 82489036 TG s rn3.chr10 18076302 2 - 110733352 TG s canFam1.chr9 10749363 2 + 53642819 TG a score=10899.0 s hg17.chr17_random 1171978 63 + 2618010 ACATTCTTCTTCAGTCGTTTAAGGCTGAGGTATGCTTTGTTCTTTTACTGCAGTGTATATTCC s panTro1.chr19 15562461 63 - 82489036 ACATTCTTCTTCAGTCGTTTAAGGCTGAGGTATGCTTTGTTCTTTTACTGCAGTGTATATTCC s canFam1.chr9 10749365 62 + 53642819 GTATTTCTCTTCTGTC-TGACAGACTGACATGTACTTCATTCTTTTATTGCAAAGTATATTCT a score=54676.0 s hg17.chr17_random 1172041 354 + 2618010 AGGATTTTTAAAGGATCCT--CGCTTCCAAGAGATCTCTGTGAATTGAAACAAAGTTA-ATCCCACTAGACCATTTTAAG--------------------AAGTTGATATAATAGCAAAATTTCTCCCACCCAAAACTATGTCAACAATTGGATGTACTCACCAAGTCACCCTTACTCTGCCACTAATTTATTTCCTTGTTGCTGAAATGATGAGAGATGTATAATCTCCACCCTCACGGAGTTGT---CATCACCCTGGAGAGGAAGGAGACAGCCAAAAGAGAGAAGTATTGTCTGGTAGATTTATTAGAGTCACAAAGTATCATCCTTCTCCAGTGTGTAAGGCGTTGTCTAAATAGGTCCAGTTAAAGCACTGCAG s panTro1.chr19 15562524 354 - 82489036 AGGATTTTTAAAGGATCCT--CGCTTCCAAGAGATCTCTGTGAATTGAAACAAAGTTA-ATCCCACTAGACCATTTTAAG--------------------AAGTTGATATAATAGCAAAATTTCTCCTACCCAAAACTATGTTAACAATTGGATGTACTCACCAAGTCACCCTTACTCTGCCACTAATTTATTTCCTTGTTGCTGAAATGATGAGAGATGTATAATCTCCACCCTCACGGAGTTGT---CATCACCCTGGAGAGGAAGGAGACAGCCAAAAGAGAGAAGTATTGTCTGGTAGATTTATTAGAGTCACAAAGTATCATCCTTCTCCAGTGTGTAAGGCGTTGTCTAAATAGGTCCAGTTAAAGCACTGCAG s canFam1.chr9 10749652 361 + 53642819 GGGATTTTTAAAGGAACTTTCCATTGCCAGGTGATTTATG-GATTATAAACAAGGCAACAAGCCATTAGACTGTTTTGGGACGTTAGGTTTAAGAAGGCCAAGTTAACATGATAGTAACATTTCCTCAACTCAAAATTCTGT----GGTTAGATGTACTCACC-AGCCACTTTCAGACTACCACTGATTTCTTTCCTTG--GTTGAAATGATGAGAG----ATAGTATCCACCCTCATGGAGCTATATCAGTCATCCTGGA-AAAAAGGACATGGCTTAAAGATAAAAATATCATCTTGTTGATTAATTAGATTTACTCAG---CAGCTTTTTCCA---CACACTGAATTATGTGAATAGTTTTGGTTAAAATACTGTAG a score=72056.0 s hg17.chr17_random 1172395 770 + 2618010 GGTAACCATCTTTTAAAAAAATTGTTGGCCACATTTTTAAGTTCACAAGGGAGGGGAAATGTCTCATACTGTAGCCCTCCTGAGTCTAGGCCCTCTGTGAGATGTGTCCATTTCTTGGACACCATATGAGACATTCCCCCTCGGATTAGAGATGCTCAACCTGCATTAACATATCTAAAGTCTACATCTGGCCACTCTAGGGTGAGTCCTGTTTACAGTGCCCATTCCTGGAGCTTGCCTCTGTTTGCCTTTTGTTTGATTACATGATGCATTACTTTTCCCAATAGGCCCGTGCTAGCATATTGGAAGAGTGATTTAATAAGCTGGCAACCTTGATGCTATCCTACCAATCCAACCTTATTTGCCTCATTTACCATTTCCACTATTGTGGCAGCCAGCCCTCCATTCCAGCCAGAGCAGCCCCTCACCATCCCCCAGTCACACCATCTGCATTTCTGCTTTTGTCTGTGCGTTTGTTCATCTAAAATTCCCTTATTTCACTCTGCCTGTGGGAATCCTATGAATCTCTCAAAAGCCAACTCAAGTTCATCTTTCTGCTTGAAACCTTCCCTGAATATTCCAGCCCTCCTGAGCCTAGTCCCTTTGTGAGATTTGTCCCCATTTCTCGGACACCATATGAGAGacttcagaggctgaagtgggaggattgcttgagcctgggaggtcgaggatgcagtgatctgtagtcataccactgcactctagcctgggcaacagagcgaggccctgtctcaaaaaCAGCCACCACC s panTro1.chr19 15562878 770 - 82489036 GGTAGCCATCTTTTAAAAAAATTGTTGGCCACATTTTTAAGTTCACAGGGTAGGGGAAATGTCTCATACTGTAGCCCTCCTGAGTCTAGGCCCTCTGTGAGATGTGTCCATTTCTTGGACACCATATGAGACATTCCCCCTCGGATTAAAGATGCTCAACCTGCATTAACATATCTAAAGCCTACATCTGGCCACTCTAGGGTGAGTCCTGTTTACAGTGCCCATTCCTGGAGCTTGCCTCTGTTTGCCTTTTGTTTGATTACATGATGCATTACTTTTCCCAATAGGCCAGTGCTAGCATATTGGAAGAGTGATTTAATAAGCTGGCAACCTTGATGCTATGCTACCAATCCAACCTTATTTGCCTCATTTACCATTTCCACTATTGTGGCAGCCAGCCCTCCACTCCAGCCAGAGCAGCCCCTCACCATCCCCCAGTCACACCATCTGCATTTCTGCTTTTGTCTGTGCGTTTGTTCATCTAAAATTCCCTTATTTCACTCTGCCTGTGGGAATCCTATGAATCTCTCAAAAGCCAACTCAAGTTCATCTTTCTGCTTGAAACCTTCCCTGAATATTCCAGCCCTCCTGAGCCTAGTCCCTTTGTGAGATTTGTCCCCATTTCTCGGACACCATATGAGAGacttcagaggctgaagtgggaggattgcttgagcctgggaggtcgaggatgcagtgatctgtagtcataccactgcactctagcctgggcaacagagcgaggccctgtctcaaaaaCAGCCACCACC a score=20916.0 s hg17.chr17_random 1173165 113 + 2618010 aaaaactatctgaggatttgaataggattatattaaatttgtagactaatttgagaattgacatctgtacaacattctaggaatgtgctgcc-tcatgtactcatttcttttta s panTro1.chr19 15563648 113 - 82489036 aaaaactatctgaggatttgaataggattacattaaatttgtagactaatttgagaattgacatctgtacaacattctaggaatgtgctgcc-tcatgtattcatttcttttta s canFam1.chr9 10751117 102 + 53642819 aaaaactatcttgggatttgaataggattgcattgagtttgag---------gagaattgacatctttgcaatattctaggaacatggtatcatcatgtattcatttctta--- a score=18852.0 s hg17.chr17_random 1173278 104 + 2618010 atgtctttcagaagagttttagggttttcatcatatagattttatgtattttttgttagataaaagatctttgcatttttgttcctaaatactccatacatttg s panTro1.chr19 15563761 104 - 82489036 atgtctttcagaagagttttagggttttcatcatatagatcttatatattttttgttagataaaagatctttgtatttttgttcctaaatactccatacatttg s rn3.chr10 18010910 81 - 110733352 ATTTCTTCCAGAAAAGTTGTGAAGCTTTTATCAC-TAGAATTCTCACATCTT-----------AAG-----------TTTACCCTCAGCTCCTTTCTTCGTCTT s canFam1.chr9 10751219 89 + 53642819 aagtccttcagaagagttttaatgttttcatctcaaaggtcttccccattctttgctgt----aag-----------tttattcctaggtactttatgtctttt a score=24693.0 s hg17.chr17_random 1173382 142 + 2618010 tattgctattgtaaatgggatattccttccattttctaattagttattggtggtacatgggaaaagtagttgaggtctgtgtgctgctgtcttgatttt-tatatagccactgtattgaattctcatattacttccagtaaga s panTro1.chr19 15563865 141 - 82489036 tattgctattgtaaatgggatcttccttccattttctaattag-tattggtggtacatgggaaaagtagttgaggtctgtgtgctgctgtcttgatttt-tatatagccactgtattgaattctcatattacttccagtaaaa s rn3.chr10 18010991 116 - 110733352 CATCAATGTTGTA------------CTTACAGTTTCTAG-----TGTTGGAGG-ATGTGTGAGGGGCA-TTGGGGTTGGTGCGTGGATCTCCTCATTTT-GTGAC--TTGCCCTACCAACATTT--TATTGTTCCCAGT---A s canFam1.chr9 10751508 142 + 53642819 TATTGATATTATAAATGGAACCATTCTTCCATTTGTTAATTAGTTATTTGTGGAACGTAAAAAAGCTA-TTGCATTTTGCATGTTGAGCTCTTGATTTTGTATTTAGCCATCTTACTGAATTCTCAGAGCACTTCCAGTAAAA a score=6573.0 s hg17.chr17_random 1173524 29 + 2618010 --caaacttagttgattctcttaggcttcct s panTro1.chr19 15564006 29 - 82489036 --taaacttagttgattctcttaggcttcct s rn3.chr10 18011107 27 - 110733352 --CAATTTTACTTG-CTCTCTTCAGCTT-TT s canFam1.chr9 10751843 31 + 53642819 CAAAATTTAAGTTGACTCTCTTGGGCCTTTT a score=14452.0 s hg17.chr17_random 1173553 80 + 2618010 tggctgtctca------------catttatcatttcatatgcaaataatcatagttttgtctcttccttttcaata----cttatattctttcctt s panTro1.chr19 15564035 80 - 82489036 tggctgtctca------------catttatcatttcatatgcaaataatcatagttttgtctcttccttttcaata----cttatattctttCCTT s rn3.chr10 18011134 70 - 110733352 TGGTTG--------------------------TTTCTAATACAAATAGTACTAGTTCTTTCCCTTTCTTCCCAACATGTCCCCATTTGTTTTCCTC s canFam1.chr9 10752006 87 + 53642819 TGACTCTCTTGGGCCTTTTAGGTTGTCCATAATTTCATATGCCAATAT-----GTTTTGTTTCTTACTTTCCAATA----CTTAATTTTTCCTATT a score=-520.0 s hg17.chr17_random 1173633 2 + 2618010 -cC s panTro1.chr19 15564115 2 - 82489036 -CC s canFam1.chr9 10752093 2 + 53642819 GC- a score=20652.0 s hg17.chr17_random 1173635 223 + 2618010 tttcctttttctttttttttcttctttctcagggccttgttgtcacccaggctggagagcaatggtgtgatctagctcattgtaacctcaagctcctgggcttaagggatcctcctgcctcagcttcctgagtggctgggactacaagcaggcagctaattaaaaaaatttttttttgtagagacaaggtctcgctatgttgcctaggctgatttTCCTGCCA s panTro1.chr19 15564117 223 - 82489036 tttcctttttctttttttttcttctttctcagggccttgttgtcacccaggctggagagcaatggtgtgatctagctcactgtaacctcaagctcctgggcttaagggatcctcctgcctcagcttcctgagtggctgggactacaagcaggcagctaatttaaaaaaattttttttgtagagacaaggtctcgctatgttgcctaggctgatttTCCTGCCA a score=-4326.0 s hg17.chr17_random 1173858 19 + 2618010 CTTTAGAGGAAGGACTTTT------------------------------------------------------------------------------------------------------------------------ s panTro1.chr19 15564340 19 - 82489036 CTTTAGAGGAAGGACTTTT------------------------------------------------------------------------------------------------------------------------ s canFam1.chr9 10752112 139 + 53642819 CTTTAAAAGAAGTGTTTTCCTATTGCATTGATTAGGACCTCTTCAACGTGATGAATAGTAACAGGAATAATAGGCATTGAACTCTTGTCCTTGACTTTAAAACAATGTTGCTATTTAGGTTTCTGGTAGATACTTTTCT a score=22396.0 s hg17.chr17_random 1173877 78 + 2618010 TTTCCTACTTTTAAG-------AG-----TTTTTTATTAGGAATTGTCTGTTGAATGTTAGCTAAAATAGTCAATAAAATGTATTAAGTG s panTro1.chr19 15564359 79 - 82489036 TTTCCTACTTTTAAG-------AG----TTTTTTTATTAGGAATTGTCTGTTGAATGTTAGCTAAAATAGTCAATAAAATGTATTAAGTG s rn3.chr10 18011333 86 - 110733352 TTTCTTATTTTTCAGCTTTAACAGAAATTATTTTTATTAGGAATCGTTTTCTTAATTTTATCTAAAA----CAGTACAGCATATTAAGTG s canFam1.chr9 10752251 73 + 53642819 TTTCTTACTTCTAAG-------AA------TTTTTATTAGGAATTACCTGTTGGATGTCATCTAAAACAGTCAATAAAATGTATTG---- a score=5774.0 s hg17.chr17_random 1173955 26 + 2618010 CCAGCTGCATGCAAGACCCTAAGTTA s panTro1.chr19 15564438 26 - 82489036 CCAGCTGCACGCAAGACCCTAAGTTA s canFam1.chr9 10752324 26 + 53642819 CCAGCTGCACACAAGTTCCCAAGTTG a score=52222.0 s hg17.chr17_random 1173981 568 + 2618010 GATACAGTCAGCCCTCTTCATCATCAGGTCCACATCTTCAGATTCAACTAGATGAGGCTGAATATTTGAAAAAAGAAACAATAAAAATACAAATAGAAAAGACAGCATAACAACTGTCACCATTGTACAATATCTATACATTTTATTAGTGATGACTTAAAGTACATGGggccaggtaccgtggctcacccttgtaatcccaatactttgggaggccaacctgggcagtatagtgagaacttgtctttactaaaaataaaaatttttttaaaattagccaggtgtggtggtatgcacctgtagtcccagctactcaagaggctgaggtgggcggatcactggaacccaggaggttgaggctgcagtgagctgtgattgtgacactgcactccggctgagcaacagagggtgatcttgtctcTAAGTCAAtaaagtatatggggggatgtgtgttggttatacgcaaatactgcaccattatatgtaagggactgagcatccacagattctggtatggcgtggcagcggtatcctagaaccaatcccctgcaagatatcaaggatgact s panTro1.chr19 15564464 568 - 82489036 GATAcagtcagccctcttcatcagcaggtccacatcttcagattcaactagatgaggctgaatatttgaaaaaagaaacaataaaaatacaaatagaaaagacagcataacaactgtcaccattgtacaatatctatacattttattagtgatgacttaaagtacatggggccaggtactgtggctcacccttgtaatcccaacactttgggaggccaacctgggcagcatagtgagaacttgtctttactaaaaataagaattttaaaaaaattagccaggtgtggtggtatgcacctgtagtcccagctactcaagaggctgaggtgggcggatcactggaacccaggaggttgaggctgcagtgagctgtgattgtgacactgcactccggctgagcaacagagggtgatcttgtctctaagtaaataaagtatatggggggatgtgtgttggttatacgcaaatactgcaccattatatgtaagggactgagcatccacagattctggtatggcgtggcggcggtatcctagaaccaatcccctgcaagatatcaaggatgact a score=11066.0 s hg17.chr17_random 1174549 58 + 2618010 gAACTGTGGAAGAATCAAAGCACTGTTAAACAGCATACAATTCCTATCTTCAAAAAAG s panTro1.chr19 15565032 58 - 82489036 gAACTGTGGAAGAATCAAAGCACTGTTAAACAGCATACAATTCCTATCTTCAAAAAAG s canFam1.chr9 10752350 56 + 53642819 GGACTATGGAAGAGTCAAAGGACTACTAAAAA--ATAGAATTCCTGCTCTCCAAAAAG a score=0.0 s hg17.chr17_random 1174607 11 + 2618010 TTATTTCATCA a score=1019.0 s hg17.chr17_random 1174607 11 + 2618010 TTATTTCATCA s panTro1.chr19 15565090 11 - 82489036 TTATTTCATCA a score=11108.0 s hg17.chr17_random 1174618 74 + 2618010 GGTAGATGAGACTT--ATAATGAATAATGAATAGAAGCAATGAATACAGATTTGGAGATAGTGGTTGTTGTGATGG s panTro1.chr19 15565101 67 - 82489036 GGTAGATGAGACTT---------ATAATGAATAGAAGCAATGAATACAGATTTGGAGATAGTGGTTGTTGTGATGG s mm5.chr11 18525625 73 - 121648857 GGGAGGGAAGACTAGCACAGCAGATGTCAGATAGAGGGGATGAATGTAAACGCAAAGACAGAAGTCAC--TGATG- s canFam1.chr9 10752406 63 + 53642819 GCTGAATAAGACTT---------AAAATACA---AAGGAATGAATACAGATTTGGAGGCA-TGGTTATTGAGATGG a score=43053.0 s hg17.chr17_random 1174692 80 + 2618010 ATAATCTTAATTGCATTTTCTTCC-AAAACATATTCATTCTCATAGAAGGGCATCAGAAAAAGATAAAGAAGGATCCTCAA s panTro1.chr19 15565168 80 - 82489036 ATAATCTTAATTGCATTTTCTTCC-AAAACAGATTCATTCTCATAGAAGGGCATCAGAAAAAGATAAAGAAGGATCCTCAA s mm5.chr11 18525698 79 - 121648857 -TAATCACAATAATGTTTTCCTCC-AAAACAGATTTATTCTCATAGAACAGCAAAGGAGGGAGATGAAGAGAAGTCCTCAA s rn3.chr10 18080373 81 - 110733352 ATAATAACCATAGTGTTTTCCTCCAAAAACAGGTTTATTCTCATAGAGCAGCAAAAGAGGGAGATGAAGAAAAGTTCTTAA s canFam1.chr9 10752469 79 + 53642819 GTACCTGTGAT-ATGTTTTCTTCC-AAAACAGATTTATTCTCATAGAGCAGCACCAGTGGAAGATGAAGAAGGAGGCTCAA a score=-114.0 s hg17.chr17_random 1174772 1 + 2618010 t s rn3.chr10 18080454 1 - 110733352 G a score=62910.0 s hg17.chr17_random 1174772 678 + 2618010 tgtcaggccgctgagcccaagctaagccatcgttaacccctgtgatctgcaggtattcgtccaggtggcctggagcaactgaagaaccaccaaaaaaatgaaacagccagttcctgccttcactgatgacattccaccatggtgatttgttcctgccccaccccaactaatcaactggccttgtgacattcctcccctggacaatgagtctcatgatctccccatcctgcaccttgtgacccctgccctgtctgcaagagataactacctttaactgtaattttccaccacctacccaaatcctataaagctgctccaccccatctccctttgctgactctctttgtggactcagtccacttgcacccaagtgaaataaacaaccttgttgctcacacaaagcctgttggtggactctcctcacatggacatacgtaacagttgggagttcaagaccagcctgaccaacatggcgaaaccccgtctctactaaaaatacaaaattagctaggcgtggtggtgcaggcctataatcccagctacctgggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccaagatcgcaccattgcactccagcctgggcaacaagaacaaaactctgtctcaaaaaaaacaaacaaaaacaagaaa s panTro1.chr19 15565248 677 - 82489036 tgtcaggccgctgagcccaagctaagccatcgttaacccctgtgatctgcaggtattcgtccaggtggcctggagcaactgaagaaccaccaaaaaaatgaaacagccagttcctgccttcactgatgacattccaccatggtgatttgttcctgccccaccccaactaatcaactggccttgtgacattcctcccctggacaatgagtctcatgatctccccaccctgcaccttgtgacccctgccctgtctgcaagagataactacctttaactgtcattttccaccacctacccaaatcctataaagctgccccaccccatctccctttgctgactctctctgtggactcagtccacgtgcacccaagtgaaataaacaaccttgttgctcacacaaagcctgttggtggactctcctcacatggacatacgtaacagttgggagttcaagaccagcctgaccaacatggcgaaactccgtctctactaaaaatacaaaattagctaggcgtggtggtgcaggcctataatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccaagatcgcactgttgcactccagcctgggcaacaagaacaaaactctgtctc-aaaaaaacaaacaaaaacaagaaa a score=676.0 s hg17.chr17_random 1175450 4 + 2618010 -CCAT s panTro1.chr19 15565925 4 - 82489036 -CCAT s rn3.chr10 18081440 5 - 110733352 CCCAG a score=87.0 s hg17.chr17_random 1175454 4 + 2618010 GAAG s panTro1.chr19 15565929 4 - 82489036 GAAG s rn3.chr10 18081445 3 - 110733352 GAC- s canFam1.chr9 10754235 4 + 53642819 GAAG a score=51248.0 s hg17.chr17_random 1175458 162 + 2618010 CTGCATGACAAGGAGTCTTCCAATGAGGATGAGATCTTCAACAGGGACA---CCAGGTAGACGACAGGGCCC---TCACAGTTCCCATCTAAAATGAGGAGGGGGTGAGAAGCTAAATTGCTCCTTTCAAGAATCAAAA-CCTTGGCACTGTTATTCTTTTCCCAGGGA s panTro1.chr19 15565933 162 - 82489036 CTGCATGACAAGGAGTCTTCCAATGAGGATGAGATCTTCAACAGGGACA---CCAGGTAGACGAGAGGGCCC---TCACGGTTCCCATCTAAAATGAGGAGGGGGTGAGAAGCTTAATTGCTCCTTTCAAGAATCAAAA-CCTTGGCACTGTTATTCTTATCCCAGGGA s mm5.chr11 18526789 137 - 121648857 CTTCAGGACAAGGAGTCGTCTGGAGAGGAGGAGATTTTCAATAAGGATGTACCAAGGTAAATG------------------------TCTAGCTCAATGAGGAGATAAGGGCC--AGTTCCTCTTTTCAAAGATTAAAAGCCTTGGCATTGTTCTT------CCAGGGA s rn3.chr10 18081448 137 - 110733352 CTACAGGACAAGGAGTCCTCTGGAGAGGAGGAGATTTTCAACAAGGATGTACCAGGGTAAATG------------------------TCTAGCTCAATGAGGAGCTAAAGGCA--AGTTGCTCATTTCCAAGTTTGAAAGCCTTGGTGTTGTTCTT------CCAGGGA s canFam1.chr9 10754239 160 + 53642819 CTACACGACAGGGATTCTTCTGATGAGGATGAGATTTTCAACAAGGAAC---CAGGGTACCTGATTGGGGACAATTTATACTTCTTTTCTAAAATGAGTTAATTATGAAAAGTTTAATTGTTCCTTTACAGAGTTAAAG------GCATTCTTCTTTTTTGCAGAGAGA a score=8871.0 s hg17.chr17_random 1175620 63 + 2618010 -CACTGAATCCCCAACAGAGAAGACCCCAACTGGAGAGTCGGCTGCTGA------GGGGGAGGAGAGTGA s panTro1.chr19 15566095 63 - 82489036 -CACTGAATCCCCAACAGAGAAGACCCCAACTGGAGAGTCGGCTGCTGA------GGGGGAGGAGAGTGA s mm5.chr11 18526926 51 - 121648857 -GTTCA----------AGAGAAGATCCT--CGGTGAAATCATCCGCAGA------AGAGAGTGTAGTCGA s canFam1.chr9 10754399 70 + 53642819 AAGGTGGTGCCCCAGTAGAGAAGCCTCGGGCTGCAGATTCAGCTGCTGAAGACCTGGGTGAGGAGAGCGA a score=2041.0 s hg17.chr17_random 1175683 11 + 2618010 GGCCCTGCTGT s panTro1.chr19 15566158 11 - 82489036 GGCCCTGCTGT s mm5.chr11 18526977 11 - 121648857 AGCCCCACGGT a score=955.0 s hg17.chr17_random 1175694 10 + 2618010 AGGAGGAGAA s panTro1.chr19 15566169 10 - 82489036 AGGAGGAGAA a score=6384.0 s hg17.chr17_random 1175704 44 + 2618010 CACAGAGTGACTCCAGCCCACATCAGGCCTCCTGCAAAACTACT s panTro1.chr19 15566179 44 - 82489036 CACAGAGTGACTCCAGCCCACATCAGGCCTCCTGCAAAACTACT s canFam1.chr9 10754493 44 + 53642819 CCTCAAGTGACTTTGTCCTGCCTCAGGCTGTCTATAAAGTTTAt a score=832.0 s hg17.chr17_random 1175748 10 + 2618010 TA-TTTTTTCA s panTro1.chr19 15566223 11 - 82489036 TATTTTTTTCA s canFam1.chr9 10754785 9 + 53642819 --ttttttgta a score=1191.0 s hg17.chr17_random 1175758 10 + 2618010 -TTCATAATTG---- s panTro1.chr19 15566234 10 - 82489036 -TTCATAATTG---- s mm5.chr16 43475804 10 + 98801893 -TTTTTAATTG---- s canFam1.chr9 10754794 15 + 53642819 ttccccaaatgaatg a score=5104.0 s hg17.chr17_random 1175768 9 + 2618010 AGATTTTAT s panTro1.chr19 15566244 9 - 82489036 AGATTTTAT s mm5.chr16 43475814 9 + 98801893 AGATTTTTT s rn3.chrX 58794704 9 + 160775580 AGATTTTAC s canFam1.chr9 10754809 9 + 53642819 agaccatat a score=82059.0 s hg17.chr17_random 1175777 171 + 2618010 TA--------GTTGAGGATCAGT--ACAGACATTTCAATTTGTACACAATTCTTAACACACGTAAAGAAAATCTAAAAAGCCAGGTA-TTG-TAATTCTTTTTTA-AAGTTATTCCAGTGACTTTCCAGCTTAAAATTTGGAAGCAAATTTTCCTTAACAGG--CTATCA----AGTACCAGTATCTTCA s panTro1.chr19 15566253 172 - 82489036 TA--------GTTGAGGATCAGT--ACAGACATTTCAATTTGTACACAATTCTTAACACACGTAAAGAAAATCTAAAAAGCCAGGTA-TTGATAATTCTTTTTTA-AAGTTATTCCAGTGACTTTCCAGCTTAAAATTTGGAAGCAAATTTTCCTTAACAGG--CTATCA----AGTACCAGCATCTTCA s mm5.chr16 43475823 178 + 98801893 TACAGGTTGTGTTAAGGATCCATACACAGACATTTCAGTTTGTACACAATTCTTAACATATG--AAAAAGGTCT-AAAAGTGACATG-TTG-TGATTCTTAATAG-CATACCTTCCAGTGACTTTTCAACTTCAAATGTGGAGGCAAATTTTCTACAAGGAG--ATATGA----AATACCAACACATTCA s rn3.chrX 58794713 178 + 160775580 TG--------GTTGAGGATCACTAGATAGACATTTCAGCTTGTTCACAATTCTTGACCCATGTACCAAAAATCT--AGAGCCCAGTA-TTG-TGTTTCTTTTAAAGCAGTTATTCCAGTAACATACCAGCTTCAAACTTGGTGGCAAATTTTCCTTAAGAGGACCTACCACAACACTGTCATAATCTTCA s canFam1.chr11 44357859 178 + 75769841 ---TGGTTGTTCTGAGGATCAGT--ACAGACATTTCAATTTGTACACAATTCTTAACGTACATATCGAAAATCTAAAAAATCATGTAGTTG-TGATCCTTTTCTAAAAGTTATTCCAGTGACCTTCCAGCTTAAAATTTGGAGGCAAATTTTCCTTAACAGT--ATATCA----AGTACCGATATCTTCA a score=4322.0 s hg17.chr17_random 1175948 28 + 2618010 CATGTTGATCAGCTGTGAC----ATACATCCC- s panTro1.chr19 15566425 28 - 82489036 CATGTTGATCAGCTGTGAC----ATACATCCC- s mm5.chr16 43476001 28 + 98801893 CATGCTAATTTACCATCAC----AGAAGACCC- s canFam1.chr11 44358037 33 + 75769841 AATGTTGATACACTGTTACTTTGTTAAGTCCCC a score=3188.0 s hg17.chr17_random 1175976 17 + 2618010 AGCAGTTCACAACTGAA s panTro1.chr19 15566453 17 - 82489036 AGCAGTTCACAACTGAA s canFam1.chr11 44358070 17 + 75769841 ATTAATTCACAATTTAA a score=31161.0 s hg17.chr17_random 1175993 346 + 2618010 CTGTttcaagcaattctcctgcctcagcctcccaagGTTTGTCAGTATAC------ttttttttttttttttttgagacagagtcttgctctttcacccaggctggagtgcagtggcacgatcttggctgcaggttcaagggttcaagtgattctcctgcctcaccctcctgagtagatgggattataggtatatgccacctcgtccggctaatttttgtatttttagt--agacggggtttcaccatgttggtcaggctggtctcgaactcctgaccccgtgatccacctggctcagcctccggaagtgctgggattacagccgtgagccactgtgcctggcctactgtctag s panTro1.chr19 15566470 354 - 82489036 CTGTttcaagcaattctcctgcctcagcctcccaagGTTTGTCAGTATACttttttttttttttttttttttttgagacagagtcttgctctttcacccaggctgaagtgcagtggcacgatcttggctgcgggttcaagggttcaagtgattctcctgcctcaccctcctgagtagctgggattataggtatatgctaccttgtccggctaatttttgtatttttagtagagacggggtttcaccatgttggtcaggctggtctcgaactcctgaccccgtgatccacctggctcagcctccggaagtgctgggattacagccgtgaaccactgtgcctggcctactgtctag a score=17698.0 s hg17.chr17_random 1176339 98 + 2618010 ttttttaaaaa--attatgatagccatcactgtgggtaagaagtgggagctcatcgtggttctgatctatgtttccctgacagttaatgaagttgaacat s panTro1.chr19 15566824 98 - 82489036 ttttttaaaaa--attatgatagccatcactgtgggtaagaagtgggagctcatcgtggttctgatctatgtttccctgacagttaatgaagttgaacat s canFam1.chr9 10786449 100 + 53642819 ttttttaaaaattgttataatagctatcctgaggggtgagaactagtatctcattatggttttgatttgcatttctttaatgactaatgatgtcgagtat a score=13527.0 s hg17.chr17_random 1176437 64 + 2618010 ctttccatgtgtgtattggccatttgtgtatcttctttggagaaatgtctattccaaacctttg s panTro1.chr19 15566922 64 - 82489036 ctttccatgtgcatactggccatttgtgtatcttctttggagaaatgtctattccaaacctttg s canFam1.chr9 10786761 64 + 53642819 ctttctatgtgccttttggccatttgtgtatcagctttggagaaatatctcttcagaaccttga a score=27443.0 s hg17.chr17_random 1176501 307 + 2618010 gcttttttttttttttttttttttttgagacaggatctcactgtgttgtacagactggagtgcagtggcatgatcacagctcactgcagcctcaacctcccgacctcaagtgattctcccacctcagcctcccacgtagctgggattataggcatgcggcaccatgaccagctaattttttgtagagatggggctttgtgatgttgccaggatggtctcaaattcctgggctcaagtgatcctcccgcttcaacctctaaaagtgccaggattacaagtgttagccaccacattcagcctacctttg s panTro1.chr19 15566986 300 - 82489036 ac-------tttttttttttttttttgagacaggatctcactgtgttgtccagactgcagtgcagtggcatgatcacagctcactgcagcctcaacctcccgacctcaagtgattctcccacctcagcctcccacgtagctgggattataggcatgcggcaccatgaccagctaattttttgtagagatggggctttgtgatgttgccaggatggtctcaaattcctgggctcaagtgatcctcccgcttcaacctctaaaagtgccaggattacaagtgttagccaccacattcagcctacctttg a score=8477.0 s hg17.chr17_random 1176808 54 + 2618010 cccattttaaaactatgtt---------ttgttgttgttgttgttggattataatagtacttt s panTro1.chr19 15567286 63 - 82489036 cccattttaaaactatgttttgttgttgttgttgttgttgttgttggattataatagtacttt s canFam1.chr9 10786825 57 + 53642819 cccatttttaaattggatttttt-----ttgtcctt-ttattattgagtcataatagttcttt a score=23376.0 s hg17.chr17_random 1176862 246 + 2618010 TTttctcttcttttttatttttatttatttttgagacagagccttgctctgtcacccaggctggagtgcagtggcatgatctcagctcactgcagcctcaactttccaggctcaggtgctcctcccaccttagcctcctgagtagctgggactacaggctcacaccaccaagaccagctaattttttttatattttttatagagacgaggtttcaccatgttgcccaggctagtTCTTTAAATCGt s panTro1.chr19 15567349 246 - 82489036 ttttctcttcttttttatttttatttatttttgagacagagccttgctctgtcacccaggctggagtgcagtggcatgatctcagctcactgcagcctcaactttccaggctcaggtgctcctcccaccttagcctcctgagtagctgggactacaggctcacaccaccaagaccagctaattttttttatattttttatagagacgaggtttcaccatgttgcccaggctagttctttaaatcgt a score=131459.0 s hg17.chr17_random 1177108 792 + 2618010 atatattctggatactagaaccttaccagatacatgatttacaaatattttctcccattctg-----------ttcactcttttgatggtattgttggcagcataaaagcttctaattttgatgtagttcaatatatctag---------tttttgtcacttgtgcttttggtgtggtatctaagtacccattacctaatccaaggtcacgaagatttacttccatgatttcttctaagaatgtt---attttagctcttacatgtgagtctgtggtccatcttgagttaacttctgtgtat----caaggatgca-------------------------gatacccagtagaaccagcaccatttgttaaaaaggccgtcctttcccccattgaattgccccactttctccgttaaaaactttttgaggaatgatgtatctaaagtaccagatcttcagtgtcctccaccttggtgagtatttacctatgatgtgcaccctgtgaccaccacctagatcaagatctagaacatgtctagcccacca-gaggctcctgtgtaccttctcccagtcattgtgcccctt----gaaaaccaccattctgacttctagagccgtgcgttagtttttcctgttgttgaacctcacgcctataaatggaatcacacagtatgtactcttttgtatctggtttctttcactgaacactacatctgtgagcttcagctgtacatacagcataagactgtagttcattcttttccattgttctgtaatactccattgtaaaaatatatcacagcctatc-acccattctc--gttaatggacatttgggttgtttccag s panTro1.chr19 15567595 789 - 82489036 atctattctggatactagaaccttaccagatacatgatttacaaatattttctcccattctg-----------ttcactcttttgatggtattgttggcagcataaaagcttctaattttgatgtagttcaatttatctag---------tttttgtcacttgtgcttttggtgtggtatctaagtacccattacctaatccaaggtcacaaagatttacttccatgatttcttctaagaatgtt---attttagctcttacatgtgagtctgtggtccatcttgagttaacttctgtgtat----caaggatgca-------------------------gatacccagtagaaccagcaccatttgttaaaaaggccgtcctttcccccattgaattgccCCACTTTCTCCTTTAAAAACTTTttgaggaatgatgtatctaaagtaccagatcttcagtg---tccaccttggtgagcatttacatatgatgtgcaccctgtgaccaccacctagatcaagatctagaacatgtctagcccacca-gaggctcctgtgtaccttctcccagtcatagtgcccctt----gaaaaccaccattctgacttctagagccgtgcgttagtttttcctgttgttgaacctcacgcctataaatggaatcacacagtatgtactcttttgtgtctggtttctttcactgaacactacatctgtgagcttcagctgtacatacagcataagactgtagttcattcttttccattgttctgtaatactccattgtaaaaatatatcacagcctatt-acccattctc--gttaatggacatttgggttgtttccag s canFam1.chr9 10786882 767 + 53642819 atatattctgagttctctaccctttttagatacataattaggaattattttctcccatcctgtaaattgtcttttcactttattggtggtattatttacagcattaatgttttcagttttgatatagtccaatatatctgggggttttttcttgtatcattcgtgcttttggtgtcatatcta--tacccatttcctaatttaaggtcgcaaagatctactcttatgtgttcttataaaacttttataattttagctcttatatttagatctatgatccatcttgagttgttttttttatatggtataaggatgaagtcctgcttgattcttctgcatagggatatccaattgtaccagcaccatttgttaaaaagactataatttcctccttTAG--------------------AAGGTTTTTTTGAGAAATGATG----TAAAGT----gatccttagta---catatctcagtaagtacttatctacgat-tacactctgtaaccaccatccagagtaaaacatagaccctttccagcccaccacaaggctctcttatgccttctcc----cattgttcccctccgtaggaagtgtccattctgacttctagcaccatagattcatttttcctctt-------------catgtacatggaatcatacaatatgtactctt---------gcctctttcactgagcattatgtctgtgagagtcacctgtgca-------------------------ttttccattgttctgtaatattccattgtaagaatatatcctgatgcatctatccattctcctgccaacagacatttgggttgtttccag a score=27817.0 s hg17.chr17_random 1177900 296 + 2618010 atttgtttgagacggaatctcactgtgctgcccaggctggcgtgaagtggcatgatcttggctcactacaacctctgcctctcaggttcaggtgattctcctgcctcagcctcccacgtagctgggattacaggcacgtgccaccgcacacagctaatttttttatttttagtagacacagggtttcactatattggccaggctggtctcgaactcctgaccttgtgatccgcccgcctcagcctcccaaagttccgggattacaggtgtgagccaccacgcccagctgtttccag s panTro1.chr19 15568384 296 - 82489036 atttgtttgagacggaatctcactgtgctgcccaggctggcgtgtagtggcatgatcttggctcactacaacctctgcctctcaggttcaggtgattctcctgcctcagcctcccacgtagctgggattacaggcacgtgccaccgcacacagctaatttttttatttttagtagacacagggtttcacgatattggccaggctggtctcgaactcctgaccttgtgatccgcccgcctcagcctcccaaagttctgggattacaggtgtgagccaccacgcccagctgtttccag a score=17458.0 s hg17.chr17_random 1178196 118 + 2618010 gttttgactattatgaagaaagctgtagtgaacatcttgtacgtgcttttggagaacctcagtgcttatttctgtgggtatat-acctgggaaaggaattgcta-ggttcttggataga-----t s panTro1.chr19 15568680 123 - 82489036 gttttgactattatgaagaaagctgtggtgaacatcttgtacatgcttttggagaacctcagtgcttatttctgtgggtatat-acctgggaaaggaattgcta-ggttcttggatagacttttt s canFam1.chr9 10787649 110 + 53642819 gttttggctattatgacgaaagctgttgtgaacattct-----tgctcttg-----cctttatactcttttctgtgggtatataatctagtaataaaattgccattgtcatcgtataggc----- a score=26833.0 s hg17.chr17_random 1178314 295 + 2618010 ttacttttttttcctgagacggagtctctctctgacgcccaggctggagtgcagtggtgtgatctcggctcactgcaacctctaccgccccggttcaagcaattctcctgcctcaccctcctgagtagctgggactacaggcacgtgccaccacacccagctaattttttgtatttttagtagagatggggtttcactgtgttagccaggatggtctcgacctcctgacctcatgatccgcccgcctcagcctcccaaagtgctgggattacaggcgtaagccactgtgcctggc s panTro1.chr19 15568803 295 - 82489036 ttttttttttttcctgagacagagtctctctctgacgcccaggctggagtgcagtggtgtgatctcagctcactgcaacctctgccgccccggttcaagcaattctcctgcctcaccctcctgagtagctgggactacaggcgtgtgccaccacgcccagctaattttttgtatttttagtagagatggggtttcactgtgttagccaggatggtctcgacctcctgacctcatgatccgcccgcctcagcctcccgaagtgctgggattacaggcgtgagccaccgtgcctggc a score=29796.0 s hg17.chr17_random 1178609 159 + 2618010 atgtttagctttaatagataccaccaccaaacagttttctgaactatttgtgctaatttatactcatattggcaacaaatgagcattctagttgctctttatcctggccaatggtgttaccaatctttttcatttcagccactctagtagatgtgtagt s panTro1.chr19 15569098 159 - 82489036 atgtttagctttaatagataccaccaccaaacaattttctaaactgtttgtgctaatttatactcatattggcaacaaatgagcattctagttgctctttatcctggccaatggtgttaccaatctttttcattttagccactctagtagatgtgtagt s canFam1.chr9 10787761 156 + 53642819 atgtttacctttagcagat---aatgccaagcattttctaacagtgcatgtactgatttgtactcacactagcaatatatgagtattttcgttgctctttatcctagctggtggtgtcatcagtcttttgacttttagccaccttaacaggtgtgcagt a score=18248.0 s hg17.chr17_random 1178768 102 + 2618010 ggttttaattttcatttccttgatgactaaaga---tgatactttttcatttacttattggccagtcaatcctcttttatagaatgtctgtccaagt--tttcatcc s panTro1.chr19 15569257 102 - 82489036 ggttttaattttcatttccttgatgactaaaga---tgatactttttcatttacttattggccagtcaatcctcttttatagaatgtctgtccaagt--tttcatcc s canFam1.chr9 10788168 98 + 53642819 ggttttaatttgcatttccctgatgaccaaaaattttgatactatttcatttccttattggc----tgatcttcttttggaag-----tgtttaagtcgtttcattc a score=937.0 s hg17.chr17_random 1178870 10 + 2618010 cagtcttaaa s panTro1.chr19 15569359 10 - 82489036 cagtcttaaa a score=58347.0 s hg17.chr17_random 1178880 361 + 2618010 ttgagttgtatgtgtatgtattgatttgaaggagctctttgtatattatagatatgagtcttttactggacaaaaa--------tag---tatatatatcaagtatctttttctagtctatagggcttgacttttaaatgtcctaatggtat-ttttattgaacagagattc----ttttaatgatgtgcagtttatcagtctttttgtttatggcttgcttggtttttgtcccatttaagagatattcatctcccc-------caaggatctgaaggtatttgcctatattatcttctagaagctttagtgatttatctttcacaattaggtttatgatctttctgggattaatttttgtgtgtggtgtgagttagaagtcaa s panTro1.chr19 15569369 357 - 82489036 ttgagttgtatgtgtatgtattgatttgaaggagctctttgtatattatagatatgagtcttttactggacaaaaa--------tag-------tatatcaagtatctttttctagtctatagggcttgacttttaaatgtcctaatggtat-ttttattgaacagagattc----ttttaatgatgtgcagtttatcagtctttttgtttatggcttgcttggtttttgtcccatttaagagatattcatctcccc-------caaggatctgaaggtatttgcctatattatcttctagaagctttagtgatttatctttcacaattaggtttatgatctttctgggattaatttttgtgtgtggtatgagttagaagtcaa s canFam1.chr9 10788662 367 + 53642819 ttgagttgtat-tttccttatttatttataggggctctttatgtgttatgggtatg-gtcttttactagagaaaaaatacaaagcagatatacatatggtaaatttcctctttgagtctat--ggcttgcctgttaaatctcttaatggtatcttttgtggaacagaagttcttgattttaatgat-----ctttatcaatctctc--tctatggttaatatgttgtgtgt-ctattttttaactctttgtctactcaaagctgcaaggctgtgaaaac-----cttgtattttcatctaaaagctttagtgttttaccttttgcagttaagtttatgatccctctaggattaacttttctgtatggtgtgaggtaggaatcaa a score=119974.0 s hg17.chr17_random 1179241 394 + 2618010 agctcatatttttccatatgggtatgtgattggcctcgctctgtttcttgaa---TATGATCATG-TAAATCACAGAACTGTCA----GTGTGGGTCAGCCTCTTCATATTTGCTATTCTG-AAGATGCTTCAGTACATCCTGAAGATTTACTTCCTGAAAATGAATGCTCTAGGACCCTGAAGGTTTTGACTGTGCACCTGCCAACTCAAGCTGAAGGTTGAAGAGGAAAG-CTCTGCAGCCCCTGCCTCGAGCTGGAGGCAGAGTGACGTCTGCT--GGGGATGCAGGCTGGG---CACCCCA-CAGGGCTCCACAGAGTGGCACTGACCATGT----TGAGTTCACTCCTGCCCAAGGTCTAGCTTCTGCTTTGCAGGCTCAGGCATCCTGTCTTGCCAGGGCCTCAAAGC s panTro1.chr19 15569726 394 - 82489036 agctcatatttttccatatggatatGTGATTGGCCTCACTCTGTTTCTTAAA---TATGATCATG-TAAATCAGAGAACTGTCA----GTGTGAGTCAGCCTCTTCATATTTGCTATTCTG-AAGATGCTTCAGTACATCCTGAAGATTTACTTCCTGAAAATGAATGCTCTAGGACCCTGAAGGTTTTGACTGTGCACCTGCCAACTCAAGCTGAAGGTTGAAGAGGAAAG-CTCTGCAGCCCCTGCCTCGAGCTGGAGGCAGAGTGACGTCTGCT--GGGGATGCAGGCTGGG---CGCCCCA-CAGGGCTCCACAGAGTGGCACTGACCATGT----TGAGTTCACTCCTGCCCAAGGTCTAGCTTCTGCTTTGCAGGCTCAGGCATCCTGTCTTGCCAGAGCCTCAAAGC s mm5.chr11 18593155 381 - 121648857 AGTTTATATTTTTCTATGTGGACATCTGATCGA----GCTCAGTGCATTGAGAGTAATGACTATA-AGAATCATGAACTTGTAT----AACTGGGCCAGAGTCTCTGGTTTTACCATTCTG-AACGTGGTTC-----------CAGATTTACTTCTGGACGGTGCATTTTATGAGGCCTTGGAGAGTCTTACTGGGCAGTAGTGAAGATATCCTGAAGCTTGGAGGG-------TTTGCAGCTTCCGCCTTAGGCTGCAGAGAGAAGGATGCTTTTTAAGAGGCGGCTGCCTGTGTCTCACCTC-----GACTCCCAAGTGTGGCCTTGACCATCTTGACTGAATTCACCCTTGCCCTGGATCTACCTTCTGCTAGTTGGTCTCAAACACAGTACCTTGTCAGGGTCCTGGAGC s rn3.chr10 18143015 384 - 110733352 AATTTATATTTTTCCATGTGAACATGTGGTTGATCTAGCTCAGTACACAGAA---TATGACTATGATGAATACCATGTCTGTATA-ACAACTGGGTCAGATTCTCTGTTTTTACCACTCTG-AAGATGGTTC-----------CAGATCGACTTCTGGAAGATGCTTTTTATAAGCCCTTGGAGAGTCT--CTAGGCAGTGGTGAAGCTGTCCTGAGGCTTAGGGGG-------CCCACAGCTTCTGCCTCAAACTGCAGAGAGAAGGATGCTTTTTAAGAGGTGGCTGCCTACGTCCCACCTC-----GGCTCCCAAGTGTGGCCTCGACCATGCTGACCAAATTCACCCTTACCCCCAATAGAGCTTCTGCTTTTTGGTCTCAGACACAGTACTTTGTCAGGGTCCTGGAAC s canFam1.chr9 10789029 376 + 53642819 aagtcatgttttccattatggatatctgaatgatca-gcaccatctattgaC---TATGAGTATA-TAAATCATGCCACTGTGTATAAGTGAGGGTCACAGTTTCCATTTTTGCTATCCTGCAAATTGCTTC-----------AGGGCCCA------------GAATGTCACAGGACCCTGAAGGTTATGAGCAGATAACTGTCAGCACTTTCGGAGGGGTGAAGAAGAAAGTCTCCACAGCCCTTGGCTTGAGCTTGAAGCAGAGGGCTGTCCTT---AGGGTCGGTGACTGCG---TGTACCAGCAGAGCTCCACAGAATGGCATTGACCAAGT----CAACTTCGCTCCTGTCCAGGATCTGACTTGTCTTGCATAGGCTCAGACATCTTGTCTTGCCAGGGTCCAAGAGC a score=0.0 s hg17.chr17_random 1179635 1 + 2618010 T a score=273.0 s hg17.chr17_random 1179635 1 + 2618010 T s panTro1.chr19 15570120 1 - 82489036 T s rn3.chr10 18144468 1 - 110733352 T a score=12105.0 s hg17.chr17_random 1179636 22 + 2618010 TGATGGGACAGGGTAGCATCTC s panTro1.chr19 15570121 22 - 82489036 TGATGGGACAGGGTAGCATCTC s mm5.chr11 18593536 22 - 121648857 TGATGGGACAGGGTAGCTAATT s rn3.chr10 18144469 22 - 110733352 TGAGTGGAGAGAGAAGCAAGTC s canFam1.chr9 10789405 22 + 53642819 TGATGGGACAGGGCAGCTTGTC a score=-764.0 s hg17.chr17_random 1179658 12 + 2618010 TGCTCCATAAAA s panTro1.chr19 15570143 12 - 82489036 TGCTCCATAAAA s mm5.chr11 18593558 11 - 121648857 TG-TCAACAGAA s rn3.chr10 18144491 6 - 110733352 TCCCTC------ a score=2050.0 s hg17.chr17_random 1179670 5 + 2618010 ATCTT s panTro1.chr19 15570155 5 - 82489036 ATCTT s mm5.chr11 18593569 5 - 121648857 TTCTT s rn3.chr10 18144497 4 - 110733352 -TCCT s canFam1.chr9 10791176 5 + 53642819 ACCTC a score=91.0 s hg17.chr17_random 1179675 1 + 2618010 A s canFam1.chr9 10791181 1 + 53642819 A a score=91.0 s hg17.chr17_random 1179675 1 + 2618010 A s panTro1.chr19 15570160 1 - 82489036 A a score=-123.0 s hg17.chr17_random 1179675 1 + 2618010 A s rn3.chr10 18144502 1 - 110733352 T a score=39443.0 s hg17.chr17_random 1179676 79 + 2618010 AAATTCACATTTGTCTCCTTCCTTCCAGTTCCCTTCACCTACCTTTGTTATTTTATGTTAAAGACATT-----GGGATGGTCAT s panTro1.chr19 15570161 79 - 82489036 AAATTCACATTTGTCTCCTTCCTTCCAGTTCCCTTCACCTACCTTTGTTATTTTATGTTAAAGACATT-----GGGATGGTCAT s mm5.chr11 18594665 79 - 121648857 AAATCCACAGTTTTCTTCATCCCACCAGGTCCTTCCACCCACCTCTGTTGTTTTACATTGAAGACACT-----TGGACAGCCAG s rn3.chr10 18144503 84 - 110733352 GGATCCACAGTTGCCTCCACCCCTTCAGAACCTTCCATCCACCTTTGTTGTTTTACATTGAAGACACTTGATAGGGTCGGTCCT s canFam1.chr9 10791182 79 + 53642819 CAATTCACATTTGGCTCGTTCCTTCCAGTCCCCTCGCCCCACCCTTCTTCTTTTATGCTACAGATGTT-----TGGATAGTCAA a score=5378.0 s hg17.chr17_random 1179755 12 + 2618010 AATTTATTCCCT s panTro1.chr19 15570240 12 - 82489036 AATTTATTCCCT s mm5.chr11 18594744 12 - 121648857 AAGTTAGTCCCT s rn3.chr10 18144744 12 - 110733352 AAAACTGTCTCT s canFam1.chr9 10791261 12 + 53642819 GATTTATTCCCT a score=16117.0 s hg17.chr17_random 1179767 83 + 2618010 CATCTTGTATGATTCTGGGCCAGGCA--CTTGCTGGAGA-TACCAAGAAAAAGAACCA-TTCCAAACAGCCTTATA---GCTAGGATGGG s panTro1.chr19 15570252 83 - 82489036 CATCTTGTATGATTCTGGGCCAGGCA--CTTGCTGGAGA-TACCAAGAAAAAGAACCA-TTCCAAACAGCCTTATA---GCTAGGATGGG s rn3.chr10 18144756 82 - 110733352 TGTCTTCTGTGTCTCAGTGCCATGCATGTTTGCTTGACATTATCAAGGAAAATGGTAA-TTCACAACAGCCTT-------CTAGGATAGG s canFam1.chr9 10791273 74 + 53642819 CATCTGTTATAACTCTGTGCCAGGCA-----------AA-----AAGAAAAATGAAAACTTGTAAACAGCTTTGTGGGTGCTAGGCTGGG a score=300.0 s hg17.chr17_random 1179850 1 + 2618010 G s panTro1.chr19 15570335 1 - 82489036 G s rn3.chr10 18144838 1 - 110733352 G a score=56708.0 s hg17.chr17_random 1179851 639 + 2618010 GAACAAAATAAACTTACGA-TTGGCATGTCAAGAATCTCTTGGAAGTTCAAGAACTATTCAAGAAGGAAGACTCTTAGTCTTCCTTCTCTTTGAGTGCCTGTTTACAGTGGTTATGGTCTCAGCACTAGCTTAATGCTGACACTAATTATTCTAAttttttttttttttttttttttgagacagtgtctcactctgtcacccgggctggagtgcagtggcacgatcttggctcactgcaacctccacctcccaggttcaagcgattctcccgtctcagcctcccgaatagctgggactacaggcacatgccaccatgcccagctaatttttgtgtgtatttttagtagaaacggggtttcatcatgttggctaggatagtctcaatctcttgacctcgtgatctgcccgcctcggcctcccaaagtgctaggattacaggcatgagccaccgtgtctggccAAAAaaaa--atttaataggcatagaagcatgtgcctatagtcctagctctttaggaggctgaggcaagaagatcacttgtacctaggagtttgaggctgcagtgagccatgatcacaccactgcactccattgagcctgggtgacagagagagaccctgtccctaagaaaTTAATTAATT s panTro1.chr19 15570336 633 - 82489036 GAACAAAATAAACTTACGAGTTGGCATGTCAAGAATCTCTTGGGAGTTCAAGAACTATTCAAGAAGGAAGACTCTTAGTCTTCCTTCTCTTTGAGTGCCTGTTTACAGTGGTTATGGTCTCAGCACTAGCTTAATGCTGACACTAATTCTTCTAA-----tttttttttttttttttgagatagtgtctcactctgtcacccgggctggagtgcagtggcacgatcttggctcactgcaacctccacctcccaggttcaaacgattctcccgtctcagcctcccgaatagctgggactacaggcacgtgccaccatgcccagctaatttttgtgtgtatttttagtagaaacggggtttcatcatgttggctaggatagtctcaatctgttgacctcgtgatccgcccgcctcggcctcccaaagtgctaggattacaggcatgagccaccgtgtctggccAAAAAAAATTTTTTAATAggcatagaagcatgtgcctatagtcctagctctttaggaggctgaggcaagaagatcacttgtacctaggagtttgaggctgcagtgagccatgatcacaccactgcactccattgagcctgggtgacagagagagaccctgtccctaaga----aaTTAATT a score=34410.0 s hg17.chr17_random 1180490 180 + 2618010 AAACT-ACTTATTTGACCTATACATATAATTATAGTACTTAGATGCCACCAGCAGATGATCATGATTAAGTTTTCCCAATAAACATTCAAACTCTAGTTATAAGTAAATAACACAAATTCCACAAAAACTATCAAGTCCTAAGTATGATGTGCAAGAGATTATTTTTAAAAATCCACGCTA s panTro1.chr19 15570969 180 - 82489036 AAACT-ACTTATTTGACCTATACATATAATTATAGTACTTAGATGCCACCAGCAGATGATCATGATTAAGTTTTCCCAATAAACATTTGAACTCTAGTTATAAGTAAATAACACAAATTCCACAAAAACTATCAAGTCCTAAGTATGATGTGCAAGAGATTATTTTTAAAAATCCATGCTA s canFam1.chr9 46359894 177 - 53642819 aaacTGGCTTATTTAA-ATGTACATATAATTACAGCATTTAGATTCCATCAACAGATAAT--TAACAAGTTTTTCCCAAGACATATTCAAA-TCTAGTTATGAGTAAGTCATAAGAATTCCACAGAAACTATCAAGTCCTCAGTATGATGTGCATGTGATCAATTCTAAAATTCCAAACTA a score=58612.0 s hg17.chr17_random 1180670 746 + 2618010 Gctctccctctccctctccctccctctccacggtctccctctgatgccgagccgaagctggactgtactgccgccatcttggctcactgcaacctccctgcctgattctcctgcctcagcctgctgagtgcctgggattgcaagtgcgcgccgccacgcctgactggttttcgtatttttttggtggagacggggtttcgctgtgttggcctggctggtctccagctcctaaccgcgagtgatctgccagccttggcctccggaggtgccgggattgcagacggagtctcgctcactcagtgctcaatgttgcccaggctggagtgcagtggggtgatctcggctcgctacaacctccacctcccagccgcctgctttggcctcccaaagtgccgagattgcagcctctgcccggcggccaccccgtctgggaagtgaggagcgtctctgcctggccgcccatcgtctgggatgcgaggagcccctctgcccggccgcccagtctgggaagtgaggagcgcctcttcccg---gccacccatcgtctgagatgtggggagcgcctcttccc---cgccgccccatctgggaggtgaggagc-gtctctgc----ccagccgccccatctgagaagtgagg--------agcccctccgcccgg-cagccgccccgtctgggaagtgaggagacccttcgcccggcagccgcccagtctgggaagtgaggggcgtctccgcccagcagccgccccgtccgggaggtg s panTro1.chr19 15571149 752 - 82489036 G------ctctccctctccctccctctccacggtctccctctgatgctgagccgaagctggactgtactgccgccatctcggctcactgcaacctccctgcctgattctcctgcctcagcctgctgagtgcctgggattgcaagtgcgcgccaccacgcctgactggttttcatatttttttggtggagacggggtttcgctgtgttggccgggctggtctccagctcctaaccgccagtgatctgccagcctcggcctcccgaggtgccgggattgcagacggagtctcgctcactcagtgctcaatgttgcccaggctggagtgcagtggggtgatctcggctcgctacaacctccacctcccagccgcctgccttggcctcccaaagtgccgagattgcagcctctgcccggcggccaccccgtctgggaagtgaggaacgtctctgcctggccgcccatcgtctgggatgcgaggagcccctctgcccggccgcccagtctgggaagtgaggagcgcctcttcccagctgccaccc--cgtctaggaagtgaggagcgtctctgcccggtagccgccccgtccgggaggttgggggcagcccccgcccggccagccaccccgtccgggagg-gaggtgggggccagccc--ccgcccggccagccgccccgtctgggaggtggggggtgcctctgcc---cagccgccccgtctgggaagtgaggagcccctctgcccggctgccaccccgtctgggaggtg a score=91.0 s hg17.chr17_random 1181528 1 + 2618010 T s panTro1.chr19 1250707 1 - 82489036 T a score=42446.0 s hg17.chr17_random 1181529 59 + 2618010 TTTGTACCAGGGCCATGCAGGCTTGGAGTCCAGAGTTGGTGCTGTGGGAACGGACTAGA s panTro1.chr19 1250708 59 - 82489036 TTTGTACCAGGGCCATGCAGGCTTGGAGTCCAGAGTTGGTGCTGTGGGAACGGACTAGA s mm5.chr11 1348691 59 - 121648857 TTTGTACCAAGGCCGTGCAGGCTAGGAGTCCAGAGTGGGCGCTGTGGGAGTGGACGAGA s rn3.chr10 698413 59 - 110733352 TTTGTACCAAGGCCATGCAGGCTAGGAGTCCGGAGTGGGCACTGTGGGAATGGACGAGA s canFam1.chr18 35755224 57 - 66173745 TTTGTACCAAGGCCGTGCAGGCTTGGAGTCTAGGGCTGGCCCCGTGGGAACAGA--GGA a score=253623.0 s hg17.chr17_random 1181588 590 + 2618010 GAGAGTTGCGGGAGAGAGAAGGAGCAGGCACGCTGGGCCTCGCGT--GTCCCCGAGCAGTGAGGGTCC--CAGTG--------TTCCCTC-CACTCCCGAGTGG-CCACAGGC-------TCGCGGGCTGGGAAG-------GATTCACTCTCTTTAGCCCCAGGGGAGCAGCTCAGCTTAGCCCAGCATGAAGAGATGGGCTCTGCTCTG-AGAGTAGGGCGGGCTTGAAGGCCCT-GATGGGTGGACCACCAGC-CTGGGCGC-AGTGGTGCTGGGG-------------GCGTGCAGCTGGGCCCAGG--GGCTGTGCACTCAGGCCTGACCCGTTGCACTGAACAAGACC-AAATCTCTGGTTGTGCGCTTAACGTGAGGGTGGGTCCAGTGTGCCCTGCGATGGGTCCCGTGTCACTGTTTACATGACCTATTTGTGTGGTTATATAGCCCTTTATTTAAAAGAGAGAAGTTCCTTTTACAAAGTTATTAAATTAATTATAT--GTTTAAAAGTTAAAG-----AAAAAAGAGCTGCAGAGTATTTATAA--AACTGTCTTTTAGAAAAAAAAC--AAGCAAGAAGACCATTTGACCATATGAATGGAAAAGGGAAGAAAGTATAAT-AGAAACTTTGCTAGTTa s panTro1.chr19 1250767 591 - 82489036 GAGAGTTGCGGGAGAGAGAAGGAGCAGGCACGCTGGGCCTCGCGT--GTCCCCGAGCAGTGAGGGTCC--CAGTG--------TTCCCTC-CACTCCCGAGTGG-CCACAGGC-------TCGCGGGCTGGGAAG-------GATTCACTCTCTTTAGCCCCAGGGGAGCAGCTCAGCTTAGCCCAGCACGAAGAGATGGGCTCTGCTCTG-AGAGTAGGGCGGGCTTGAAGGCCCT-GATGGGTGGACCACCAGC-CTGGGCGC-AGTGGTGCTGGGG-------------GCGTGCAGCTGGGCCCAGG--GGCTGTGCGCTCAGGCCTGACCCGTTGCACTGAACAAGACC-AAATCGCTGGTTGTGCGCTTAACGTGAGGGTGGGTCCAGTGTGCCCTGCGATGGGTCCCGTGTCACTGTTTACATGACCTATTTGTGTGGTTATATAGCCCTTTATTTAAAAGAGAGAAGTTCCTTTTACAAAGTTATTAAATTAATTATAT--GTTTAAAAGTTAAAG----AAAAAAAGAGCTGCAGAGTATTTATAA--AACTGTCTTTTAGAAAAAAAAC--AAGCAAGAAGACCATTTGACCATATGAATGGAAAAGGGAAGAAAGTATAAT-AGAAACTTTGCTAGTTa s mm5.chr11 1348750 521 - 121648857 G-----TGCACG--------TGGGCAAGTGTACTGGTCTTGGGGC--------------------------------------TGCCCTT-GTCTCCCTGGTGGTCTGCA------------GTGGGATTTGAGC-------GCTTTCCTTTCAGAAG-TCCAGTGGGGC-TCTCAGCTTAATCCAGAAGGAAGAGATGGGCTCTGCCCTGAAAAGTGGTTATGTCTTGACGCCCCTGGGTGAATAGGCCACCAGC-CTGGGCAC---TGGGGCAGGAA-------------CCATGGTGCTGG----------------------AGCCTGGCACAGTGCACCGGACAAGACC-GAATCGCCGGTTATGAGTGTGGGTGGAAGGTGTGTCT-GTGTGTC---CGATGGGTCCGGTGTCACTGTTTACATGACCTATTTGTGTGGTTATATAGCCCTTTATTTAAA--AGAGAAGTTCCTTTTACGGAGTTATTA----AATTATAT--GTTTAAGAGCTAAAAC-GAAAAAAAAAAGCTGCAGAGTATTTATAA--AATTGTCTTAAAAAACAAAAACAAAAACAAAAAAAACATTTGACCGTATACATGGAAAAGGGAAGAAAGTATAGT-AGAAACTTTGCTAGTTT s rn3.chr10 698472 510 - 110733352 G-----TGCAAG--------TGGGCAAGTGTACTGGGCTTGGGTC--------------------------------------TGCCCTT------CCTGGTGGTCTGCA------------GGGGGACTTGAAA-------GCTTTCTTTTCAGATT-TCCAGTGGG---CCTCAGTTTGATCCAGAAGGAGGAGATGGGCTCTGCCCTGAAACGTGGTTATATCTTGAAGCCCCTGGATGGATAGGCCACCAGC-CTGGGCAT---TGGGGCAGGAA-------------CCATGGTGCTGG----------------------AGCCTGGCACAGTGCACCGGATAAGACC-AAATCGCCGGTTATGAGTGTGGGTGGAAGGTGTGTCA-GTGTGTCCTGCGATGGGTCCGGTGTCACTGTTTACATGACCTATTTGTGTGGTTATATAGCCCTTTATTTAAA--AGAGAAGTTCCTTTTACGGAGTTATTA----AATTATAT--GTTTAAGAGCTAAAA---AGAAAAAAAAGCTGCAGAGTATTTATAA--AATTGTCTTAAAAAACAAAAAC--A---GAAAACAACATTTGACCGTATAAATGGATAAGGGAAGAAAGTATAGT-AGAAACTTTGCTAGTTG s canFam1.chr18 35755281 581 - 66173745 A-----CAC-----------CGGACGCGCACTCTGGGGCTTGCGA----GTTTGAGCAGGGAGGGCTC--CAGGGCAGGGGGCCGCTGGC-CACT-CCTGGTGGCCCACAGCCCTGACCGCTGCCGGCTGGCAGGGGGCTGTGGTTCACT---------CTCAGTGCGGC--------------CAATGGGCATAGATGGCCTCTGCTCCTACGAGTAGGGTGTCCTCGAGGGCCCTGCATGGGCGGGCCACCAGC-CTGGGCGCTACAGGCGCTGGGAGGGACAGGGCGTTCTGTGGCTTTGGGCCAGGG--GCCACGGCGCTCCAGCCTGACACATTGCACTGAACAAGACC-AAATCACTGGTTGTGAGCATACGTGAAGGGTGTGTCC--CGTGTCCTGCGATGGGTCCCGTGTCACTGTTTACATGAGCTATTTGTGTGGTTACATAGCCCTTTATTTAAAAGAGAGGAGTTCCTTTTACGAAGTTATTA----AATTATAT--GTTTAAAAGCTAAAG-----AAAAAAGAGCTGCAGAGTATTTATAA--AACTGTCTTTTTAAAAAAAAAA--AACAAGCAAGAACATTTGACCGTATATATGGACAAGGAAGGAAAGTATAAT-AGAAACTTTGCTAGTTT s galGal2.chr3_random 955769 512 - 1636275 GGGTGTTCTGTGTAATAGATGTGGTATTCATTTCTAGGCGCGCCTCTGTGCCCGAGCAGTGAGTTTCCTTCAGGC--------TTCCATTGCAGTAGAGTGTGGATAGCAGCG---------GTGGACGGGAAGA-------TGCTGGCGTGC------CCCACTG-----CCTCTGCCCCAGCAGAGGGGATGGGATGGGGTCTGT------------------------------------GTGGGGGCCCAGCACTGGGGGG---GGGGGGAGGTA-------------CCTTGCTGACTG---CAGGCCGGTTTTG------TGCCTAATGCGTTGCACTGAACAAGACCAAAATCACTAGTTGTTCCCGTGTTTTGAGGGT--ATCA--AGTGTC----------TCTAGTGTGATGGTTTACACGACCAGTTTATGTGGTTAAATAGCCCTTTTATTTAA--AGAGAAACATCGTTTTAAGAGTTATTA----AATTATCTAAGTTTAAAATGAAAATCAGACAGAAGAGAG----AGCGTATTTATAGTCAGCTTTTTTTATCCGAGAGGGC---------GAGAATATTTGGCCATAGAAATGG---------GGCAGTATTCTCGGAGACTTTGCTAGTTA a score=7333.0 s hg17.chr17_random 1182178 30 + 2618010 aaaaaaaaagaaaaaaaaagaaaaaaaaTC s panTro1.chr19 1251358 30 - 82489036 aaaaaaaaagaaaaaaaaacaaaaaaaaTC s mm5.chr11 1349271 12 - 121648857 AA------------------AAAAAAAATC s rn3.chr10 698982 13 - 110733352 AAA-----------------AAAAAAAATC s canFam1.chr18 35755862 28 - 66173745 AACAAAAGAAAAAAACAA--AAAAAAAATC a score=244993.0 s hg17.chr17_random 1182208 294 + 2618010 CCTTTCTTGTAAACTTACGGACACCTCTTTGTGGCTGTTGGAGTTTAGTTTTTATATACACAGAGTTATCAGACATTATTTATAAAACTTAGTTTAAAAAAAAGAC----------------AAAAAAAAAAAAGCCAAGCCGTGAGCCGACCAGAAGGC---------CGTCCTCTTTGATA--TCTTTTGCAATTGTACCGAAAGTGACTTACTCCTCTGCCCTTCCTGCTTCCGTCTCTTGCCGGTGCC--------GTGGTGTCGTCCGTGC-CTGGTGAGGTTTTGTGCAGCGGTAAAGTGCTGGTGCTTCTGGTGACCTTTGAC s panTro1.chr19 1251388 297 - 82489036 CCTTTCTTGTAAACTTACGGACACCTCTTTGTGGCTGTTGGAGTTTAGTTTTTATATACACAGAGTTATCAGACATTATTTATAAAACTTAGTTTaaaaaaaagac-------------aaaaaaaaaaaaaaaGCCAAGCCGTGAGCCGACCAGAAGGC---------CGTCCTCTTTGATA--TCTTTTGCAATTGTACCGAAAGTGACTTACTCCTCTGCCCTTCCTGCTTCCGTCTCTTGCCGGTGCC--------GTGGTGTCGTCCGTGC-CTGGTGAGGTTTTGTGCAGCGGTAAAGTGCTGGTGCTTCTGGTGACCTTTGAC s mm5.chr11 1349283 288 - 121648857 CCTTTCTTGTAAACCTGGGGACAGCGC--TGTGGCTGTTGGAGTTTAGTTTT--TATACACAGAGTTATCAGACATTACTTATAAAACTTAGTTTAAAAAAAGAA-----------------AAAAAAAAAAAAGCCAAGCTGCGAGCCTACC-GGAGGC---------CGTCCTCTTTGATATCTCTTTTGCAATTGTACCGAAAGTGACTTACTCCTCTTCCCTTCCTGCTTCCG--TCTTGCCGGTGCC--------GTGGTGTTGTCCGTGC-CTGGTGAGGTTTTGTGCAGCCGTAAAGTGCTGGTGCTTCTGGTGACCTTTGAC s rn3.chr10 698995 305 - 110733352 CCTTTCTTGTAAACCTGGGGACAGCTC--TGTGGCTGTTGGAGTTTAGTTTT--TATACACAGAGTTATCAGACATTACTTATAAAACTTAGTTTAAAAAAAGAAAAAGAAAAAAAAGAAAAAAAAAAAAAAAGGCCAGGCTGCGAGCCTACC-AGAGGC---------TGTCCTCTTTGATATCTCTTTTGCAACTGTACCGAAAGTGACTTACTCCTTCGCCCTTCCTGCTTCCG--TCTTGCCGGTGCC--------GTGGTGTTGTCCGTGC-CTGGTGAGGTTTTGTGCAGCCGTAAAGTGCTGGTGCTTCTGGTGACCTTTGAC s canFam1.chr18 35755890 317 - 66173745 CCTTTCTTGTAAACTTATGGACAAGTCTTTGTGGCTGTTGGAGTTTAGTTTTTATATACACAGAGTTATCAGACGTTATTTATAAAACTTAGTTTTaaaaaagaca----------aaaaaaaaaaaaaaaaaaGCCAAGCCGTGAG-CGACCACAAGGCGCGTGCTGGCGCCCTCTTTGCTATCTCTTTTGCAATTGTACCGAAAGTGACTTACTCCCTTGCCCTTCCTGCTTCCGTCTCTTGCCGGTGCCGTGCCGTAGTGCTGTCGTCTGAGC-CTGGTGAGGTCTTGTGCAGC-GTCCCGTGCTGGTGCTTCTGGTGACCTTTGAC s galGal2.chr3_random 956306 265 - 1636275 aGTTTCTCACGAACCTCCCGCAAACTGTTTGTGGC--TCCGAGGTTAGTTTT----TATAAAGAGTTATCAGACTTTATTTATAAAACTTAG-----AAAAAGAAA-------------AAAAAAGACAAAAAA--------------------AGAGGC--------AAGTCCTGTTTGATATCT-TTTTGCAATTGTACCAAAAGTGACTTATTC--TCGACCTTGCTGGCCCCC-CTCGTGTC-CCCTC--------GTGTTGCTCTCTGTGCTCTCCCGGCTCCGTGTGGCGCTGTGCTGTGGTGGTGTCAGTGGCTGCCTTTGCC a score=1000.0 s hg17.chr17_random 1182502 1 + 2618010 C s panTro1.chr19 1251685 1 - 82489036 C s mm5.chr11 1349571 1 - 121648857 C s rn3.chr10 699300 1 - 110733352 C s canFam1.chr18 35756207 1 - 66173745 C a score=564.0 s hg17.chr17_random 1182603 6 + 2618010 TTCTGT s panTro1.chr19 81232868 6 + 82489036 ttctgt a score=26869.0 s hg17.chr17_random 1182609 168 + 2618010 aaatctcacccatccttcaaggcccaa--tcaaggccacctcccacaaaaagccaacgcaggtgggtttccc------aactccaagagcgcagagtgtg--------tgtctgagttt--gctctagcgacccagcacagccagctttacagtatggttatttgttcacatgcctgatccttgtc s panTro1.chr19 81232874 168 + 82489036 aaatctcacccatccttcaaggcccaa--tcaaggccacctcccacaaaaagccaacgcaggtgggtttccc------aactccaagagcgcagagtgtg--------tgtctgcgttt--gctctagcgacccagcacagccagctttacagtatggttatttgttcacatgcctgatccttgtc s canFam1.chr18 30412770 183 + 66173745 AAACCTTACTCAACCTTCAAGGCCTGGCTTCAATGCTGTATCGCACAGAAAGCCAAC-CAGATGGATTTTGCTGCTGAAGCCATGAGGGGGTGGGATGGGGAGGTGGCTGTCTGCGTTTCCACTCTAGCAACCTAGCACAACCAGCTTTGCCTTA--GCTGTCTGCTTACACGCCATATTCTCATC a score=12622.0 s hg17.chr17_random 1182777 110 + 2618010 acctaaaagcttcctgagaacagaaa----TCACCTGGGTTCAGATCTGCTAGGCCGACGCGTGCCCAACACCCCACACACACCCATCAAATTAGATGGACGAGGTGCCAGCTA s panTro1.chr19 81233042 110 + 82489036 acctaaaagcttcctgagaacagaaa----TCACCTGGGTTCAGATCTGCTAGGCCGACGCGTGCCCAACACCCCACACACACCCATCAGATTAGATGGACGAGGTGCCAGCTA s rn3.chr10 110029535 85 + 110733352 ACTTTAGGGCTTCTTCAGAATAGAAACTGTTCACCTGGGTCAAACATT---------------------CATTCCACACTCACACAT--GATTGTACTGATA------CAGTCA s canFam1.chr18 30412953 95 + 66173745 GCCTGCGGGCATCTTGAGGCTGGAAA----TC-CTCAGGCTCCCCTGTGCTGGGCCTACAC-TGCGTCACACTCAACATGCACCCGC-----TAAGTAGACAATGA-------- a score=30990.0 s hg17.chr17_random 1182887 116 + 2618010 CACTTTCAAAGCTAGTGATGTCCCA--CAGCCCAGGATAACTTGTCAGTGAAACTTCTCAAAACACAATGCAATTCTCTCCTTCACCTGGTGTAT--TCTGGCTCTTACTGTGTCACTTT s panTro1.chr19 81233152 116 + 82489036 CACTTTCAAAGCTAGTGATGTCCCA--CAGCCCAGGATAACTTGTCAGTGAAACTTCTCAAAACACAATGCAATTCTCTCCTTCACCTGGTGTAT--TCTGGCTCTTACTGTGTCACTTT s mm5.chr11 120294857 105 + 121648857 CAACTTCAAAGCTAGTCATCCCTCAGCCTTCCCAGGAGAGCTC-TCAGAG-------TCAAGAGGACA-GCATTTCTCAAATGTACCTATTGTAC--CAGGACTCTGTCTG----GTTTT s rn3.chr10 110029620 103 + 110733352 CACGTTCAAAGGTAGTCATCCCTCA----GCCCAGGAAATCTC-TCAGAG-------TCAGGAGCACA-GCATTTCTCGTTTGTACCTGTTGTACTGTGTGACTCTGTCTT----TCTTT s canFam1.chr18 30413048 116 + 66173745 CACTCTCAAAGCTACCCATGTTCTG--TGGCCCGAGACAGCTTCCCAATAAAACCTGCCCAAACCCCACGCATTTCTCTCCTTCCCCTGGTGTAC--TCTCGTTCGTCCTGCCTTGCTTC a score=2639.0 s hg17.chr17_random 1183003 14 + 2618010 CTACTTATCTTCCC s panTro1.chr19 81233268 14 + 82489036 CTACTTATCTTCCC s mm5.chr11 120295104 14 + 121648857 CCATTTATCTTTCT s rn3.chr10 110029723 14 + 110733352 CTTTCTTTCTTTCT s canFam1.chr18 30413164 10 + 66173745 CTAGTGACTT---- a score=6045.0 s hg17.chr17_random 1183017 72 + 2618010 TCGACATGGACAGAACA----GAGTGGAAAATCA------CAACTTTGGGCTTAGCTCTGTCCACATAACCT----------------------------------GGGGGTGCCT s panTro1.chr19 81233282 75 + 82489036 TCGACATGGACAGAACA----GAGTGGAAAATCAGGA---CAACTTTGGGCTTAGCTCTGTCCACATAACCT----------------------------------GGGGGTGCCT s mm5.chr11 120295118 96 + 121648857 TCAAGGAGTACAGGCTC----AGGAGAAAGACTA-------------GGGCTCCAGTTTGTCCACATCACGTAAATCGATCAAT---TTGTCTGCACTTTAAGGGAGAAGGCATTA s canFam1.chr18 30413174 116 + 66173745 TCAACACGTAGAAAATCCGGTGAATGGGGAACCTGGAGACAAGTTCTGGGCTTAACTCTGCCCACCTAACCTTGGGCTAGTGATGAACCACCTTGACTTTAAGTGAGGAGCTGCCC a score=13020.0 s hg17.chr17_random 1183089 94 + 2618010 GCGAGCAGTCGGCTACTACACCCCATTCGTATCTCTACTCCTTGTTTT------TTTTAACTGGCTGTAACACAGAGGCCAAGC---------------------GT-TTAAAAAGCGTTTA s panTro1.chr19 81233357 94 + 82489036 GCGAGCAGTCGGCTACTACACCCCATTCGTATCTCTACTCCTTGTTTT------TTTTAACTGGCTGTAACACAGAGGCCAAGC---------------------GT-TTAAAAAGCGTTTA s mm5.chr11 120295214 100 + 121648857 GCAGGCAGTTGGCTACTATGCCCTACTA------CTGTTCCATG-----------TTTGATTGGCAGT----CAGAAACTACGCATTCTGTAACTCTTTGACTTAGC-TTAATTATTATTTA s rn3.chr10 110029922 79 + 110733352 GCAAGTATTTGGTTACTACATCCTACTA------CCGCTCCGTG-----------TTTGACTGGCTTT----CATAAATTAAGC---------------------AT-TCTGAAACTCTTTG s canFam1.chr18 30413290 92 + 66173745 GCAGGCACTGAGGTTTCAGTCCCTCTTA------CGCCTCCTTCCTTTCTTGTGTCTAAACAGGCATC---GCAAAAACTGCAT---------------------ACGTTGATAAATGCTTA a score=5231.0 s hg17.chr17_random 1183183 10 + 2618010 CCTTAGGTAA s panTro1.chr19 81233451 10 + 82489036 CCTTAGGTAA s mm5.chr11 120295452 10 + 121648857 CCTTAGTTAA s rn3.chr10 110030001 10 + 110733352 ACTTAGCTAA s canFam1.chr18 30413385 10 + 66173745 CCCCAGTGAA a score=-1159.0 s hg17.chr17_random 1183193 14 + 2618010 GTTTT-------------------GGTCATTTC s panTro1.chr19 81233461 14 + 82489036 GTTTT-------------------GGTCATTTC s mm5.chr11 120295462 22 + 121648857 GTCTTAAA-----------TCTAGAATTGCTTC s rn3.chr10 110030150 33 + 110733352 GCCTTAGTTAAATCTTAAATCTAGAATTGTTTT s canFam1.chr18 30413395 20 + 66173745 -------------GTTTGAAGTGGAATCATTTC a score=6376.0 s hg17.chr17_random 1183207 23 + 2618010 GTT-----TCTTTAAGAGAAAAAACCTT s panTro1.chr19 81233475 23 + 82489036 GTT-----TCTTTAAGAGAAAAAACCTT s mm5.chr11 120295484 23 + 121648857 GGG-----TCTCTGAGAAAGGACACCTT s rn3.chr10 110030183 28 + 110733352 GTTCCGGATCTCCGAGAAAGGACACCTT a score=83145.0 s hg17.chr17_random 1183230 195 + 2618010 AGAGCTGCTT----TTAAGGCGAG-------TTTTTCGCGATT------------ACTGGA-GCTCATACTCCGTCCTG--------------------------------GGGTACGCCTC-CGCCT---------------CCCT----------CCCT-ACCGTGCTGATTCCCGCGCCTGTGTAGACGACCAAGTATTTGGCGTTCCGGACGGCGCTGGCCAGCTCCCGGACCTTCCCCCGCAGCTCCTCCGGGTCGTCGCACACCTGCCAAGA s panTro1.chr19 81233498 195 + 82489036 AGAGCTGCTT----TAAACGCGAG-------TTTTTCGCGATT------------ACTGGA-GCTCATACTCCGTCCTG--------------------------------GGGTACGCCTC-CGCCT---------------CCCT----------CCCT-ACCGTGCTGATTCCCGCGCCTGTGTAGACGACCAAGTATTTGGCGTTCCGGACGGCGCTGGCCAGCTCCTGGACCTTCCCCCGCAGCTCCTCCGGGTCGTCGCACACCTGCCAAGA s mm5.chr11 120295507 225 + 121648857 GAAGTTACTT----CAAAGGTGAG------------CGAGATT--------------TTGA-ACTCCAGCACTGTACAGCCCGAGTTTGCATCCCAGA------------AGGGGGCGCCTCACACCCGAAGCAACGCGCAGGCCCT----------CACTCACTGTGCTGATTCCAGCGCCCGTGTAGACAACCAAGTGCCTGGCACTTCGGACAGCTCCGGCCAGTTCGCGGACCTTCCTCCGCAGCTCCTCCGGGTCATCACACACCTGATAGGA s rn3.chr10 110030211 225 + 110733352 GAAGTTATTT----CAAAGGTGAGAGAGCATTTGAACTCCAGC------------ACTGAACAGCCCAAGTTTGTGCCC---------------CAGA------------AGGGGGCGCCCCACACCTGAAGCAATGTGCAGGCCGT----------CACTTACCGTGCTGATCCCAGCGCCTGTGTAGACAACCAAGTGTCTGGCACTTCGGACAGCTCCGGCTAGTTCGCGGACCTTCCTCCGCAACTCCTCTGGGTCATCACACACCTGACAGGA s canFam1.chr18 30413730 254 + 66173745 AGAGCTGCTCTGCGCGAAGGTGCG-------TTTCCTGCGGGTCAGGGCCGGCGCGCAGAG-GGCTCTGCCGGGTCCTG---------------GGGCCCGTCACCCGGCAgggggcgcccc-gccccgcgcgggcggccggACCCTGGAAAGGGCCGCCTCACCGTGCTGATCCCCGCGCCGGTGTAGACCACCAGGTACTTGGCGTTGCGCACGGCGCCGGCCAGCTCGCGGACCTTCCTGCGCAGCTCCTCCGGGTCGTCGCACACCTGCCGAGA a score=1200.0 s hg17.chr17_random 1183425 4 + 2618010 CGCC s panTro1.chr19 81233693 4 + 82489036 CGCC s canFam1.chr18 30413984 4 + 66173745 CGCC a score=47039.0 s hg17.chr17_random 1183529 689 + 2618010 TATATAAGAGatatata-ttatataatatatataaaatatatataataaatatatattatataatatatataaaatata--------------------------------tataataaat-------atatattatataaaatatatataataaat--atattatatataatatatataaaatataaa--------------tatataatatatataaaatata------------aatatataatatatataaaatata-----aatatataatatat---------aatatataataaatatatattatata----------------taataaat-------atatattatatattatatgtaataaatatatataacatataatatatataatatatattatatataataaat----------ttatatataata-------tatattatatataataaatttatatataa--tatatattatatatattaaatataaaatatatatatataaatatatatatatttgagacagagtcttgctctgttgcccaggctggagtgcagtggtgcaatctcggctcactgcaagctatgcctcctgggttcacgccattctcctccctcagcctcccaagtagctgggaccacaggcgcccgccaccacgcctggctaattttttgtatttttagtagagatgatatttcaccatgttagccaggatgatctcaatctcctgaccttgtgatctgcccgcctcagcctcccaaagtgctgggattacaggcatgagccactgcgcccggcc s panTro1.chr19 66867394 808 + 82489036 tatataaaatatatataattatatattatatataaaatatatataataattatatattatatattatatataaaatataataaatgtatgttatatattatatataaaatatataataaatgtatgttatatattatatataaaatatataataaatgtatattatatataatatatataaaatatataatcaatgtatattatatataatatatataaaatatataataaatgtatagtatatattatatataaaatatataataaatgtatagtatattatatataaaatatataataaatgtatagtatataatatatatgaaatatataataaatgtatagtatatattatatataatatataataaatata-ataa-atatgttatatataatatataataaatataataaatatataatatattatatataataaatatattatataatatataataaatttatatatatattatatattatatagaataaatataaaa---atatatataaatatgtatatatttgagacagagtctttctctgttgcccaggctggagtgcagtggtgcaatctcggctgactgcaagctatgcctcccgggttcacgccattctcctgcctcagcctcccaagtagctgggaccacaggcgtccgccaccatgcctggctgattttttgtatttttagtagagatgatgtttcaccatgttagccaggatggtctcaatctcctgacctcgtgatctgcccgcctcagcctcccaaagtgctgggattagaggcatgagccactgcgcccggcc a score=14416.0 s hg17.chr17_random 1184218 80 + 2618010 TACTGATGCTTAATA-TTATGACTTTCTCCTTTCCACCCTCCCTGCACCCCTCACCCCACGTTAACAGGTACAAatatatg s panTro1.chr19 66868202 80 + 82489036 TACTGATGCTTAATA-TTATGACTTTCTCCTTTCCACCCTCCCTGCACCCCTCACCCCACGTTAACATGTACAAatatatg s canFam1.chr9 7127409 80 + 53642819 TACTGATGCTTAATACCCATGACCTTCTCC-GTCCACCCTCCCCACACACCTCCCCTAGAGTTAACATGGTCAGAAGTATt a score=17797.0 s hg17.chr17_random 1184298 198 + 2618010 tatatatataaaatatatatatctttatattatatttatatGtttttttatagagatggggtcttgctatgttgcccaggttgttctcaaactcccagcctcaagtgatcctcctgccttcgcctcccaaaatgctaggataacagtgggagccaccacacccagccCATATTTTTTATCTTGTTTATGGTTATTATT s panTro1.chr19 66868282 198 + 82489036 tatatatataaaatatatatatctgtatattatatttatatGtttttttatagagatggggtcttgctatgttgcccaggttggtctcaaactcccagcctcaagtgatcctcctgccttggcctcccaaaatgctaggataacagtgcgagccaccacacccagccCATATTTTTTATCTTGTTTATGGTTATTATT a score=26266.0 s hg17.chr17_random 1184496 168 + 2618010 ACCTAACAGTATAAGGTTTCTGAACATACTGCATTTGGGTACTGTTTTGATAAATAGATTCAATTAGACATCACAATGGTATGGACCTTTCTAGTTTTACATTATCTCACCTGAG-------------------------GCAGGTGAACTGTTAACTCCATGTTATCCAGAATTTCCCAGGGCTAGAACCCA s panTro1.chr19 66868480 168 + 82489036 ACCTAACACTATAAGGTTTCTGAACATACTGCATTTGGGTACTGTTTTGATAAATACATTCAATTAGACATCACAATGGTATGGACCTTTCTAGTTTTACATTATCTCACCTGAG-------------------------GCAGGTGAACTCTTAACTCCATGTTATCCAGAATTTCCCAGGGCTAGAACCCA s canFam1.chr9 7127877 175 + 53642819 ACCTAGCACTACAA----TTTTAACACATTGCATTTTAGTATTG--------AGTAGACTCAATCAGACATCATAACTGAATGAACCTTTCTAG-TTTATGTTATCATGCTGGAGTCTACCAGTAACCTTTATTGTATAAGCAGGTGGACTATCATCCCTATGTTATC-----TTTCCCAGGAGTAGGACCAA a score=55845.0 s hg17.chr17_random 1184664 649 + 2618010 TAGATTCAGAGCTTttctatttttttttttttttgagacagggtctcactcccatcacccagactggagttcagtgatgcaatcttggatcacttcagccttgacttttaggggttcaatgatcctcccacctcagcctctggggtagctgggactgtaggcgtgtgtcaccatgcccggataatttttttttttttttttcagtagagacagggtttcgaccatgttgcccaggctggtcttgaattcctggactcaagcgtcaagctggccgggcgcggtggctcacgcctgtaatcccagcactttgtgaggctgaggtgggtggatcatgaggtcaagtgatcgagaccattctggccaacatggtgaaactctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcgcacctgtagtctcagctactcagggggaggctgaggcaggagaatcccttgaacctgggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctggcaacagagcgagactcttgtctaaaa-aaaaaaaaaaaaaaaaaaaaagcctcaagctatccatccatcttggcgtcccaaagagttgggattacaggtgtgagccatgacacctagcTTA s panTro1.chr19 66868648 634 + 82489036 TAGATTCAGAGCttttcta----tttttttttttgagacagggtctcactcccatcacccagactggagtgcagtgatgcaatcttggatcacttcagccttgacttttaggggttcaatgatcctcccacctcagcctctggggtagctgggactgcaggcgtgtgtcaccatgtccggctaa-----ttttttttttttcagtagagacagggtttcgaccatgttgcccaggctggtcttgaattcctggat-------tcaagctggccgggcgcagtggctcacgcctgtaatcccagcactttgtgaggctgaggtgggtggatcatgaggtcaagtgatcgagaccattctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgcgcacctgtagtctcagctactcagggggaggctgaggcaggagaatcccttgaacctgggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctggcaacagagcgagactcTTGTCTAaaataaataaataaataaataaaaagcctcaagctatccgtccatcttggcgtcccaaagatttgggattacaggtgtgagccacgacacctagccTA a score=40167.0 s hg17.chr17_random 1185313 290 + 2618010 GATTCATAACTATTAAGGCAGTCTCCAAAGCTCCCATGGCTACAAGTGGTTGATCAGGAGCTGGAAGCGGGGGGACTG---TCTGGTTCTGTGCCTTACTGTCATTCTAGTGTGGAgctgtccgatgtgaaagccactagatgcatctggcag--ggggcacgtgatatggctggtccatattgagatgtgtgggaagtgcaaaatccaca--------tggtaagacttggtatacaaaggataatgaatgtagggtatctcattaatatatttttatacagatgttcctcaacttatgatg s panTro1.chr19 66869282 290 + 82489036 GATTCATAACTATTAAGGCACTCTCCAAAGCTCCCATGGCTACAAGTGGTTGATCAGGAGCTGGAAGCGGGGGGACTG---TCTGGTTCTGTGCCTTACTGTCATTCTAGTGTGGAgctgtccgatgtgaaagccactagatgcatctggcag--ggggcacgtgatatggctggtccatattgagatgtgtgggaagtgcaaaatccaca--------tggtaagacttggtatacaaaggataatgaatgtagggtatctcgttaatatatttttatacagatGTTCCTCAACTTATGATG s canFam1.chr9 7128052 266 + 53642819 GATTCATAACTACCGAGGCACTTTCCATAGGTCCCATGGCTGTAAGTGGTGTTGCTGGGCCAGGCAGCCAACAGTCTGAGTGCTGGTTCAGGGCCTCACCCTCATTCTAGCCCAGAGCAGAccagcacaaaaaccatgagccatgtgtggccactgagccttgaaatgtggctagtccgagctgagatgtgctaccagtggaaaatatgcaacagcttctgat--gacttagcatg-aaataataatgaatatagaat----------------------------------aacttatgaag a score=769.0 s hg17.chr17_random 1185603 14 + 2618010 aggttatattctga s panTro1.chr19 66869572 14 + 82489036 CGAGTATATTCTGA a score=3478.0 s hg17.chr17_random 1185682 63 + 2618010 tattatttacatgctgaaatgatattttggatttgttgggttaaata--ttttataaaaatgaat s canFam1.chr9 7128544 65 + 53642819 TAGTTTTTACAAAATGAGATGATATTTTGGATATATTGGGTTAAAAAATTTTTGTAAAAATGAGT a score=38076.0 s hg17.chr17_random 1185760 518 + 2618010 tttttttttttttttttttttttgattcagagtttcactcttgttgcccaggctggagtgcaacggcttgatcttggctcactgcaacctctgcctcctgcgttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggc-cctgccaccatgcccgggtaatttttgtatttttagtagagatggggtttctccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccacctcggcctcccaatgtgctgggattacaggtgtgagccacttcgcccagtcCCCCATCTGCCTGCTtccctccatccctccctcccttccttccctccGtttctctctctctctttct------------------------------------------cagggtcttactctgttgcctcggttggagtacactggcatgataagggctcactgcagctttgatttcccaggctcaagtgatcct------cccacctcagcctcccaaagtgcagggatcacaggtatgagccactgcacccggcctca s panTro1.chr19 18958408 558 - 82489036 tttctttttttttttctttttttgattcggagttttgctcttgttgcccaggctggagtgcaatggcctgatctcggctcactgcggcctccgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgggattacaggcacctgcaaccacgcccgggaaacttttttatttttggcagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggcatgagccacctcacccagccccccgtctgtctccttcctttc-----ttccttccttccttccctctgtttctctctctctctctctttctctctctctctttttctctttctctttttctttctcttgcagtgttttactctgttgcccaggttggagtgcactggcatgataagggctcactacaacttggatttcccaggctcaagtgatcctgatcctcccacctcagcctcccaaag----gggattacaggtatgagccactgcacccggccTCA a score=546.0 s hg17.chr17_random 1186278 2 + 2618010 ta s panTro1.chr19 18958966 2 - 82489036 TA s canFam1.chr9 7131894 2 + 53642819 TA a score=5134.0 s hg17.chr17_random 1186280 17 + 2618010 tttttatttACAAATAT s panTro1.chr19 18958968 17 - 82489036 TTTTTATTTACATATAT s rn3.chr1 39030993 12 - 268121971 TTTTTGTTTG-----AT s canFam1.chr9 7131896 17 + 53642819 TTTTTATTTACAAATAT a score=41781.0 s hg17.chr17_random 1186297 149 + 2618010 TTTAGA-CATTTGAAATACTACAGCATTCAGATCTGCT----------TA--CAAAATGAATGAAAATGAC--TGCTTATCAAGAAACTACTAT--GACTTTGTGACATGACTATAGCAGTCTTAT--------------AAGTAAAT-------TTGG--AGTAGTTAA----GCAGATCTAAAATATGGAG s panTro1.chr19 66870418 148 + 82489036 TTTAGA-CATTGGAAATACTACAGCATTCAGATCTGCCCCTAAAGGTCTA-------------AAAATGAC--TGCTTATCAAGAGACTACCAT--GATTTTGTGACATGACTATAGCAGTCTTAT--------------AAGTAAAT-------TCTG--AGTAGTTAA----GCAGATCTAAAATATGGAG s mm5.chr2 41947116 178 + 181686250 TTTAGATTATTTGAAATACAACTTTATTCTGATTC-------------TAAACGAAAAGAATGGGAATGACAGTAACAAACAAGATTTCCCCACTGGATATTGCGATGGGACTGCAGCAGTCTTATCTTTGAAATTCAGAAAGGAAACAACTCTGTTCA--AACAGCTAAATATGCAAGTCCAAAAAATGAAG s rn3.chr1 39031005 164 - 268121971 TTTAGATTATTTGAAATACAACTTTATTCTGATTC-------------TAAACGAAAAGAATGGGAATGAC--GG--TAACAAGATCTTACCACTGAATATTGTGATGCGACTGCCCCAGTCTTTG-----AAATTCAGGAAGGAAAT-------TCAGGAAACAGCTAAATATGCAGGTCCAAAAAACTGAA s canFam1.chr9 7131913 145 + 53642819 TTTAGT-TATTTGAAATACAACTGTATTCATATCTGTC----------TG--CAAAAGGAGCAGAAATGAT--TGCACAGCAAAAGACTG------GTTATTGGGACACGACTATGGCCGCCTTAC--------------AAGTAAAT-------TCGA--GGCAATTAT----GCAGGTCTGAAACACGAAG a score=932.0 s hg17.chr17_random 1186446 9 + 2618010 TAACACTTA s panTro1.chr19 66870566 9 + 82489036 TGACATTTA s canFam1.chr9 7132058 9 + 53642819 GAGCCTTTA a score=23968.0 s hg17.chr17_random 1186455 336 + 2618010 ggctggccgtggtggctcacaactgtaatcccagcacttgcagaggccaaggtgagtggatcacttgaggccaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaacaaaaaaa------------ttaggcaggtgtggtggtacatgcctgtagtcccaactactcaggaggctgagtcatgagaatcgcttgagcctgggaggcagaagctgcagtgagccgagatcatgccactgcactccagcctgggcgacagagcaagactctgtctcaaaaaataaaataaaataaaataaaataataaaataaaataTGGAATA s panTro1.chr19 66870575 326 + 82489036 ggctgggcgcgttggctcacgactgtaatcccagcacttgcagaggccgaggcaggtggatcacttgaggccaggagttcaaaaccagcctggccaacatggtgaaatcccatctctactgaaaatacaaaaaaaaaaaaagaaaaaaaaattaggta----tggcggtgcatgcctgtagtcccaactactcaggaggctgagtcatgtgaatcgcttgaacccaggaggcagaggctgcagtgagctgagatcatgccactgcactccagcctgggcaacagagcaagactctgtcttaaaaaataaaataaaataaaata------------------TGAAGTA a score=-31.0 s hg17.chr17_random 1186790 1 + 2618010 A s rn3.chr1 39031169 1 - 268121971 G a score=1438.0 s hg17.chr17_random 1186791 7 + 2618010 ACATTTT s panTro1.chr19 66870901 7 + 82489036 ACCTTTT s mm5.chr2 41947294 7 + 181686250 GTATGTT s rn3.chr1 39031170 7 - 268121971 GTATGTT a score=83842.0 s hg17.chr17_random 1186798 209 + 2618010 AAACCATCATATGCCACTCCAAAGCTCACTTGTTTCCTAC------------AATTAAAC-ATTTGCTTGGCTATAGGAGACAGGGACAAACATTCT----TGATGACCACACTGCA-----GCCTATAAAACTGGATTTCTGACACTGGGCTCCAGCTTCATTTCCTCA-GGGTCTT--------TGTAGGAGGGCAAGCATTTGAACAGTGTCCAGCTCACACTCCCACTATACTGTC s panTro1.chr19 66870908 209 + 82489036 AAACCATCACATGCCACTCCGAAGCTCACCTGTTTCCCAC------------AATTAAAC-ATTTGCTTGGCTATAGGAGAAAGTGGCAAACATTCT----TGATGACCACACTGCA-----GCCTATAAAACTGGATTTCTGACACTGGGCTCCAGCTTCATTTCCTCA-GGGTCTT--------TGTAGGAGGGCAAGCATTTGAACAGTGTGCAGCTCACACTCCCATTGTGCTGTC s mm5.chr2 41947301 235 + 181686250 TAACTGCCACAT-TCACT-CGAAGCCCATTCATCTCCTTCAGCATCCCAATGAAGTACACGATCTGCTTAGCTAAATAAG---GTGGCACACGCGCTGCACCGCTGACATCACAGGACAGTTGCCTATAAAACTAGACTTCTGACGCAGGGCTCCAGCTTCACTTTCTCACAGGTCATCATCCTCATCTGGGAGAGCAGTCGTCTGAGCAACCTCTAAATCATGCTCGTACTGTGCTGCC s rn3.chr1 39031177 236 - 268121971 TAACTGCCACAT-TCACTCCGAAACCCGTTCATCTCCTTCAGCGTCCCAGTGAAGTGCAAGATCTGCTTAACCAAATGGC---GTGGCACACCCGCGGCACTGCTGACATCACAGGACAGTTGTCCGTAAAACTAGACTTCCGACGCTGGGCTCCAGCTTCACTTGCTCACAGGTCGTCATCCTCACCTGGGAGGGCAGTCATCTGAGCAACCTCTCAATCGAGCTCGTACTGTGCTGCC s canFam1.chr9 7132067 211 + 53642819 AAAGCTTCACAT-TCACTGCAGAGCTCATTTGTTCTCTGC--------AATCAAGCGTATGTTTTGCTTGGCCACGGGATAAAGTGCTAAACACTCT----TGATG-CCATACTGCT-----GCCTGTAAAACTGGATTTCTGACACAGGCCTCCAGCTTCATTTCCTCA-TGGTCAT--------CGTGGGAGGACAAGCATTGGAGCAACCTCCAAGTCATACTCCCA-TATGCTGTC a score=11278.0 s hg17.chr17_random 1187007 90 + 2618010 CTGAACCTTCTCCTANGGGCAAATGGTGGAGGCGATATAGAAATGGGCAGAGCAGGGCCAC-AACTTCAACATAAGAATCTCAATGTGTGT s panTro1.chr19 66871117 90 + 82489036 CTGAACTTCCTTCTAGGGGCAAATGGTGGAGGCGATATAGAAATGGGCAGAGCA-GGCCACAAACTTTAACATAAGATTCTCCGTGTGTGT s canFam1.chr9 7132278 77 + 53642819 CTGAACCTCCTCCAGGGAGAGCCTGGGGGAG-------------GGACAGAGCA-GGCCACAACCTCCAAAGTAGGCTCTTCAGAgtgtgt a score=105368.0 s hg17.chr17_random 1187197 1167 + 2618010 AGTCATCCTAGTGACATGGGCTCTTGGCCAAAGAATTGCACTGaggatgagggacatgatggtgacctgctgccagcagcccagcagcccacgccacaagcaatactttcagttctgggtgctttactgtaaatgggacaaggaggagaggaatcaaagtgcttagggacttcaagtcacgtacctcaaggaatgtttggagaagctgagaaagaaaactcagggggcggggcgcggtggctcacgcctgtaatcccagcactttgggaggctttggtgggcagatagcttgaggctgggagtttgagaccaccctggccaacatagcaaaaccccatatctactaaaaaatacaaaaattagccaggtggcggcgcatgcctgtaatcccagctactggggaggctgaggcatgagaatcacttgaacttgggagccaagattgtgctactgcaatccagcctgggcgacagagtgagaccctgtctcaaaaaaaataaaaaagaaaaagaaaagaaaactcaggggaccctaacagctacctgccttaacatacctggtatgttacctggtaagctatcaagttcaggtcaattaaatttgttccatgtggttctacaggaagtagccaggaccagtgtagtggggctgcagttggaattatactgagacagaccttgaaacaggagaaaggatttttgagtagtttgaaatggcggaagatacactggtctTGAACCtgctcctcaaagtgtggtgcagaattgcagcctggcttcagaggaagcctattagacaagtactaggtctcagcccccagctcagacctactgaatcagtgcctgcagtttaaaaagatgcccagggccaggcacagtggctcacacctgtaatcccagcactttgggaggctgagg-caggcggatcacctgaggtcagaa-gatcaagaccagcctgaccaaca-tggtgaaacccccgtctttactaaaaacacaacaattagccaggcatagtgatgggtgcctgtaatcccggctactcagtaggctgaggcaggagaatcgcttgaacctaggaggcggaggttgcagtgagccaagattgtgtcactgcactccagtctgggagacagaatgaaactccatctcaaaaaaaaaaaaaaaaaaa------- s panTro1.chr19 15603672 1176 - 82489036 agtcattctagtgacatgagctcttggccaaagaattgcactgaggatgagggacatgatggtgacctgctgccagcagcccagcagcccaagccacaagcaatactttcagttctgggtgctttactgtaaatgggacaaggaggagaggaatcaaagtgcttagggacgtcaagtcatgtaccgcaaggaatgtttggagaagctgagaaagaaaactcagggggcggggcacggtggctcacgcctgtaatcccagcactttgggaggctttggtgggcagacagcttgaggctgggagtttgagaccaccctggccaacatagcaaaaccccatatctactaaaaaatacaaaaattagccaggtgctggcgcatgcctgtaatcccagctactggggaggctgaggcatgagaatcacttgaacttgggagccaagattgtgctactgcagtccagcctgagcgacagagtgagaccctgtctcaaaaaaaataaaaaagaaaaagaaaagaaaactcaggggaccctaacagctagctgccttaacatacctggtatgttacctggtaagctatcaagttcaggtcaattaaatctgttccatgtggttctacaggaagtagccaggaccagtgtggtggGGCTGCAATTGGAATTATACTGAGACAGACCTTGAAACAGGAGAGAGGATTTTTGAGTAGTTTGAAATGGCGGAAGATACACTGGTCTTGAACCtgctcctcaaagtgtggtgcagaattgcagcctggcttcagaggacgcctattagacaagtactaggtctca-cccccagctcagacctactgaatcagtgcctgcagtttaaaaagatgcccagggccaggcacggtggctcacacctgtaatcccagcactttgggaggctgagggcaggcggatcacctgaggtcagaaagatcaagaccagcctgaccaacagtggtgaaacccccgtctttactaaaaacacaacaattagccaggcatagtgatgggtgcctgtaatcccagctacttggtaggctgaggcaggagaatcgcttgaacctaggaggcggaggttgcagtgagccaagattgtgccactgcactccagtctgggagacagagtgaaactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaa a score=44728.0 s hg17.chr17_random 1188364 271 + 2618010 GATACTTTGCCTGAAAACATAATGAGC---ATATTTGAAAATGTCAGTAGCATACACTTTt-aaaaataaat------gtaaataagtaaatagagacaaaagacaaatctcccatgtag---tgttccagataatttcggtagatactccacc---------tcctaactcccactctttatacatgggttgtacatggtgaa----tgaccaaagaggatggtatggaaaatggggaaaaaaagag-taactttacagtggagaaa-ctgacaaacactacttcagccaggtaatta s panTro1.chr19 15604848 273 - 82489036 GATACTTTGCCTGAAAACATAATGAGC---ATATTTGAAAATGTCAGTAGCATACACTTTTtaaaaataaat------gtaaataagtaaatagagacaaaagacaaatctcccatgtag---tgttccagataatttcggtagatactccacc---------tcctaactcccactctttatacatgggttgtacatggtgaa----tgaccaaagaggatggtatggaaaatggggaaaaaaagaggtaactttacagtggagaaa-ctgacaaacactacttcagccaggtaatta s canFam1.chr9 46496166 294 - 53642819 GGTATTTCATCTGAAAACATAACGAGCTTATTATTTGAAAATGTAAGTAGCATACACTTTA-AAaaataagtaattgaataaatgaatgaaggaggacaaaatataaatctcccatgcagaaaaattccaaataatctatgaacatactccaccctcaaggctccctggtacttaacccttacccattggttgtgcatagtgacttctttcccaaaaagcacagc-tgaaaagtgagagaaaagagat---gcttgatagtggagaaacctgactagcatgacctcacccaggtgatTT a score=1919.0 s hg17.chr17_random 1188635 20 + 2618010 aTAGCGGAGAGAGCAAGCGT s panTro1.chr19 15605121 20 - 82489036 aTAGCGGAGAGAGCAAGCGT a score=-558.0 s hg17.chr17_random 1188655 3 + 2618010 --GTA s panTro1.chr19 15605141 3 - 82489036 --GTA s canFam1.chr9 46496682 3 - 53642819 GAG-- a score=12301.0 s hg17.chr17_random 1188658 86 + 2618010 TGTCCTGTGTTTTTCAACCTTGCTGACACCCTATAGTCTTGTggggaacagtctggtgaagcataaagatcttggatctggagtca s panTro1.chr19 15605144 86 - 82489036 TGTCCTGTGTTTCTCAACTTTGCTGACACCCTATAGTCTTGTggggaacagtctggtgaagcataaagatcttagatctggagtcg s rn3.chr10 96326425 57 + 110733352 TGTCCCATGTCTCCAGACCTTGTTGAAGCCCTGCAGGC--------------------AGGCAAAGAAA---------CGGGGTCG s canFam1.chr9 46496685 68 - 53642819 TTTCCCGTGTTTCCTGACTTCGCCAACACCTTATGCAACTGTGGGG------------------AAGTAGTTTggccctcaagtca a score=33974.0 s hg17.chr17_random 1188744 87 + 2618010 gccagctctga---gctccaatcctacctctgtgtgctcttggggcagtcactc-aacctcattgagtc----tgtttcc-ccatctgtgagaaga---- s panTro1.chr19 15605230 87 - 82489036 gccagctctga---gctccaatcctacctctgtgtgctcttggagcagtcactc-aaccttattgagtc----tgtttcc-ccatctgtgagaaga---- s mm5.chr11 106632449 96 + 121648857 GTCCGCTCTGCCATGTTCCAATGCTATCTCTCTGCATTCTTGGGACAGTCACTTGAGCTTCATTGACCCTCAGTGTCTCCTCCATCTGTGAGAACA---- s rn3.chr10 96326487 84 + 110733352 GTCAT---------GTTCCAATGCTATCTCTGTGTGTTCCTGGGACAGGCCCTTGAACTTCATTGAGCCTCAGTGACT---CCACCTATGAGAACA---- s canFam1.chr9 46496753 93 - 53642819 accagctctgg---gttccaatcttacctccctgtgttggcggggcggtcactt-aacctcactgaggctc--agattcc-ttgtctgtaagtgggagga a score=-150.0 s hg17.chr17_random 1188831 1 + 2618010 g s panTro1.chr19 15605317 1 - 82489036 g s mm5.chr11 106632545 1 + 121648857 C a score=291.0 s hg17.chr17_random 1188831 3 + 2618010 gga s canFam1.chr9 46496846 3 - 53642819 gga a score=573.0 s hg17.chr17_random 1188832 2 + 2618010 ga s panTro1.chr19 15605318 2 - 82489036 ga s canFam1.chr9 46496847 2 - 53642819 ga a score=4361.0 s hg17.chr17_random 1188834 15 + 2618010 ttagaatgcAGCGAT s panTro1.chr19 15605320 15 - 82489036 ttagaatgcAGCGAT s rn3.chr10 96326571 15 + 110733352 CTCGAATGTGGGGCC s canFam1.chr9 46496849 15 - 53642819 ttagaatacAGTGAC a score=29311.0 s hg17.chr17_random 1188849 315 + 2618010 GAggccgagtgcagtggttcaaacctgtgatcccagtactttgggagatcaaggcaggagaatcgcttgagcccaggagttcaagaccagcctgggcaacatagagagacctccatctctacaaaaaatttaaaaattagctgggtgtggtggtgcacacctgtaatctcagctacttaggaggctgagtggggaggattacttgagcctgggaggttgaggctgcagtaagctatgatggtgccactgcactgcagcttgggtgacag--tgagaccttgtcttaaaaaatacatgacattaaaaaagaaaaagaa s panTro1.chr19 15605335 317 - 82489036 GAggccgagtgcagtggttcaaacctgtgatcccagtactttgggagatcaaggcaggagaatcgcttgagcccaggagttcaagaccagcctgggcaacatagagagacctccatctctacaaaaaatttaaaaattagctgggtgtggtggtgcacacctgtaatctcagctacttaggaggctgagtggggaggattacttgagcctgggaggttgaggctgcagtaagctatgatggtgccactgcactgcagcctgggtgacagagtgagaccctgtcttaaaaaaTACATGACATTAAAAAAGAAAAAGAA a score=4396.0 s hg17.chr17_random 1189164 11 + 2618010 TGCAGTGACGT s panTro1.chr19 15605652 11 - 82489036 TGCAGTGACGT s mm5.chr11 106632551 11 + 121648857 TGCAGTGTCAT s canFam1.chr9 46497075 11 - 53642819 TACGGTGACAT a score=32996.0 s hg17.chr17_random 1189175 183 + 2618010 CTGTCTGGCCCTTAGCAACTGTGAGTGCTGTTGGAATCATATTCTAT------TTGAAGGCAGCTCCAAAGTACTGGAGTGGAGTCAGGGG--TGGCTTTGCAGAAGG-GTCCTGCTGC----------------TAACACAGTTTCCCT---CGGGCAGATCCCCTCATACTGCCAGA-CTTTCCA--GTCCTTCACTCATTCTTCACTAAAG s panTro1.chr19 15605663 182 - 82489036 CTGTCTGGCCCTTAGCAACTGTGAGTGCTGTTGGAATCATATTCTAT------TTGAAGGCAGCTCCAAAGTACTGGAGTGGAGTCAGGGG--TGGCTTTGCAGAAGG-GTCCTGCTGT----------------TGACACACTTTCCCT---CGGGCAGATCCCCTCATACTGCCAGA-CTTTCCA--GTCCTTCACTCATTCTTCACTAAA- s mm5.chr11 106632562 181 + 121648857 GTCTCAGG-CCTCAGTAACAGTGAGTGCTGGAGAAATT---TCCTGTG--GCCTTTGAGACAG----------TTGGAGTGAAGGAGAGAA--GAGCCCAGCAGAAGGAGTCTATCTGTGGTCAATTCTCTGCGATGGCGCAACCTCCTT-----------TCTCCCTCCCCCACCACG-C---CCATTGCCCTTCACTCAATCTCTGCTAAAA s rn3.chr10 96326588 170 + 110733352 GTCTCAGG-CCTCAGCAGTAGTGAGTGCTGGAGAAATC---GCCTGGG--GCATTTGAGAGAG----------CTGGAGTGGAGGACAGAA--CAGCCCAGCAGAAGGAGTCTA--TGG----------------TCAGATCTCTGCGAT---TGAGTAA-TCTCCTTCTCCCTCC----CCCACCATAGCCCTTCACTCAATCTCTGCTAAAA s canFam1.chr9 46497086 185 - 53642819 ATGTCAGC-CCTTAGTGAAACTGAGTGCTTGAAAGAT----GTCTGAGTATACTTGGAAGCAGCTCCCAGGTGCCAGAATAGAGCGCAGGGGCTGGCTCAGCAGAGG--GTCATCCTGC--------------------ACCACTGCCCCAGACAGGCGGTTCCCTTCATGCTCTCAGATCCACCCA--TCCATTCATTCATTCTCTGCTAAAG a score=27215.0 s hg17.chr17_random 1189358 311 + 2618010 CTGCAAGGggccagggcgagatggttcacgcctataatcccagcactttgggaggctgaggtgggtggattgcttgagatcaggagtttaaaaccagcctggccaacatggcaaaaccctgcctctacaaaaaaaaaa--tacaaaaattaaccaggcgtggtggcgtgcgcctataatcccagctactccagaggctgaggcattagaattgcttgaacccaggaggcagaggttgcagtgaactgagatcgcgccactgcactccagcctaggcga-cagggcgagaccctctctcaaaaaaaaaaaaaaaa s panTro1.chr19 15605845 313 - 82489036 CTGCAAGGggccagggtgagatggctcacgcctataatcccagcactttgggaggctgaggtgggtggactgcttgagatcaggagtttaaaaccagcctggccaacatggcaaaaccctgcctctacaaaaaaaaaaaatacaaaaattagccaggcgtggtggtgtgcgcctataatcccagctactccagaggctgaggcattagaattgcttgaacccaggaggcagaggttgcagtgaactgagatcacgccactgcactccagcctgggcgaacagggcgagaccctgtctcaaaaaaaaaaaaaaa- a score=391599.0 s hg17.chr17_random 1189669 920 + 2618010 GCTCCAAGGTCAAGGGCTTTTCAGACCCTCTTGGTCCATTTGGTTAGGGGGTGTTTTCACAGAGCTTTGCCTGTTAGCTTTATG-GGACCCGGAGGGCATACTTTATAGAACACAATTTTCATACCAGTGTCTCTAACCACAAACCCCAAGAGTCTGAACGTTGAGACACTCAGGAAGTTGAAAGGGACCTCTCCTCTTCAGAGGCCCGGCCCAGCTCTCA-------GGAATGGCATGCATCAAAAGGCAGGAAGTCCCTCACAAGTCTGTCCTATCAAGCCACCAGACACTGGTTACCTTTATGTGGCTGCACAAGAGGCTGAGTTCCCAGGGAGGGGCGAGGTGGTCTGGGGCCTTCA-AGCCGTGGTGGAACCCACGCCTGAGAAGC--------------GAGGCCTGCCGCTCCCACCACAGGAAGCCTGGCCCCCGCCAGC-AACAGAGAGACT------------CAGAGCCCGGGCCTCGA----TGCCCTCAT--GGGATAAGTGGCATTTTGGTTCCTGTTTCCTTCCCTCTCT------GTTTTTCTTTTCATAGATT-CTCCATGCAAATATTAAACATGTCCTGCAAATCTCAGGAACCAGCACACAGAGAAACACAGAGAAGAGTGAGTGGCCTTCTTCCAAGACCTGGTTTATCAAAGGTCTGAGGCAGTCCTGATCCGCTGCTCTCCTCCTGCTGGCTGAGCCTCGCCGCTGGCTCAGTGGCCCAGGGTGCCAGCTCCCTTTCCTGGGCCTCCCGGGAAAGGAGAG---GGAGAAGGTTGAGGGAGCAAGAGGGTCCCAGGGCTGCCTCC--AGGGCTGGCCTGGCAAGTTGCAGC--TCTG-CCCCTGGGGATTTCCCTGCAGCCAATGG--CTGTGGAAGAGGAAAGGAGAGGACCTTTTGATGTGGTGGAGAAGCATCATTGTAGAAGAAAGAGGAATGAGTAACAGGTTGGCCAGGGA s panTro1.chr19 15606158 921 - 82489036 GCTCCAAGGTCAAGGGCTTTTCAGACCCTCTTGGTCCGTTTGGTTAGGGGGTATTTTCACAAAGCTTTGCCTGTTAGCTTTATG-GGACCCGGAGGGCATACTTTATAGAACACAATTTTCATACCAGTGTCTCTAACCACAAACCCCAAGAGTCTGAACGTTGAGACACTCAGGAAGTTGAAAGGGACCTCTCCTCTTCAGAGGCCCGGCCCAGCTCACA-------GGAATGGCATGCATCAAAAGGCAGGAAGTCCCTCACAAGTCTGTCCTATCAAGCCACCAGACACTGGTTACCTTCATGTGGCTGCACAACAGGCTGAGTTCCCAGGGAGGGGCGAGGTGGTCTGGGGCCTTCA-AGCCGTGGTGGAACCCACGCCTGAGAAGC--------------GAGGCCTGCCGCTCCCACCACAGGAAGCCTGGCCCCCGCCAGC-AACAGAGAGACT------------CAGAGCCCGGGCCTCGA----TGCCCTCAT--GGGATAAGTGGCATTTTGGTTCCTGTTTCCTTCCCTCTCT------GTTTTTCTTTTCATAGATT-CTCCATGCAAATATTAAACATGTCCTACAAATCTCAGGAACCAGCACACAGAGAAACACAGAGAAGAGTGAGTGGCCTTCTTCCAAGACCTGGTTTATCAAAGGTCTGAGGCAGTCCTGATCCGCTGCTCTCCTCCTGCTGGCTGAGCCTCGCCGCTGGCTCAGTGGCCCAGGGTGCCAGCTCCCTTTCCTGGGCCTCCCGGGAAAGGGGAG---GGAGAAGGTTGAGGGAGCAAGAGGGTCCCAGGGCTGCCTCC--AGGGCTGGCCTGGCAAGTTGCAGC--TCTGCCCCCTGGGGATTTCCCTGCAGCCAATGG--CTGTGGAAGAGGAAAGGAGAGGACCTTTTGATGTGGTGGAGAAGCATCACTGTAGAAGGAAGAGGAATGAGTAACAGGTTGGCCAGGGA s mm5.chr11 106632743 871 + 121648857 GCAGCAAATTCAAGGGCCTTTCAGACCTTCTTGGTCAACTTGACT-------------------------TTGTCAGCTTTTTGCAGCCCCAGAGGGCACATTCTCTAGAACACGGTGTTCACAGCAGCGCCTCTAACCACAAACCCCAAGAGTCTCAGCAGCGAGACACTCAGGATGTCT-AAGGGTCCTCTCGTCTTCTGAGGCCCAGCCCAGCGCACATAGCATGGGAATTGCATGCATC-AAAGGCAGGAAGTCCCTGACAAGTCTGTCCCAT-AAGCCACCAGACGCTGGTTACCTTCATGTGGCTGAACTAGAGGTCGAGTTCTCAGGGTGGGGCGAGGTGGTCTGGGGCCTTCGCAGCCAGGGTGGAGCCCAAGCCTGAGGAACTAGACCTGAGAATTGAGGCCTGAGCTCCCCACCCCAGGAAGCCTGGCTCCCAGCTGCTCAAAGAGAGGCT------------GGTAGCTTGGGTCTCTGCTCCCTCCCTCGT--GGGATAAGTGGTATTTGAATTCCTGCTTCCTTTCCTGTTTCCCCTCCCCTTTTTTTCTATACATT-CCCCAAGGAAATACTAAGTGTGTACTGCAAATCCTGAGGATAAGATCCAAGGGAAACATTGAGAAGAGTTGGTGGCTTTCCTTGAGGACCCCATTTATCAAGGGTCTG-GTTAGCCCTGA-----------------------------------CTAGCTTAGTGGCCCAGGGTGCCAGCTCTATT--------ATCCTGGAAAAGAGAGA---GGGTAAGG----GGGGGCCTGGGGG----GGCGCGCACTGA--AGGGCTAGCCTGGCAGGTCACAGAAGTCTGACATATAGAGATGTCTCTGCAGCCACTGGCCCCAAAGGAGAGAAAAGGTGAGGACGGCTGGAGGC--CAAAGAAGGAT-----TTGGGAGAAGAGGAGGGAGAGAC-GGTGTACCAAGGA s rn3.chr10 96326758 857 + 110733352 GCAGCGAATTCAAGGGCCTTTCAGACCTTCTTGGTCAACTTGACT-------------------------TTGTCAGCTTTTTG-CAGCCCAGAGGGCACATTCTTTAGAACTCAGTGTTCACAGTAGCGCCTCTAACCACAAACCCCAAGAGCCTCAGCGCCGAGACACTCAGGATGTCT-AAGGGTCCTCTCGTCTCCAGAGGCCCAGCCCGACACACATAGCATGGGAATTGTATGCATC-AAAGGCAGGAAGTCCCTGACAAGTCTGTCACAT-AAGCCACCAGACGCTGGTTACCTTCATGTGGCTGAACAAGAGGTCGAGTTCTCAGGGTGGGGCGAGGTGGTCCGGGGCCTTCGCAGCCAGGGTGGAGCCCAAGCCTGAGGAACTAGACC--------TAGGCCTGAGCTCCCCACCCCAGGAAGCCTGGCTCCGGACTGCTCAAAGAGAGGCT------------GGTGGCTTGGGTCTCAG----CTCCCGAATGGGGGAGAAGTGGTATTTGAATTCCTGCTTCCTTTCCTGTTT----TTTTTTTTTTTTCTTTACATTCCCCCAAGGAAATACTAAATGTGTACTTCAAATCCTAAG-ATAAGATCCTAGAGAAACATCGAGAAGAGTCGGTGGCCTTCCTCAAAGATCCCGTTCATCAA-GGTCTG-GATAGCCCTGG-----------------------------------CTAGCTTAGCGGCTGAGGGCGCCGGCTCAAT---------CTCCTGGAAAAGAGAGGGATGGGAAAGG----GAGGGTGGGAAGT----AGGGCACACACCGAAGGGCTAGACGGGCAGGTCGCAGAAGTCTG--ACGTAGAGATGTCTCTGCAGCCACTGGCCCCAAAGGAGAGAGAAGGTGAAGACCGCTGGAGGC--CAAGGAAGAAC-----TGGGGGGAAGAGGAGGGAGAGAC-GGTGCACCATGGA s canFam1.chr9 46497271 839 - 53642819 GCAGCAAGGTCAAGAGCCTTTCAGACGCTCCTGCTCAGTCCAGCTAGAGGTGGTTTGCACAAAGGT----CTGCTA---------GGACCCAGAGGGGACACTTTGTAGAACACAATATTCATGCCAGCATCTCAGACCACAAACCCCAAGAGTCTGAGTGTGGAGACACTCAGGAAGTCTGAAGGGTCCTCTCATCCGCAGGGGCCCAGCTCAGCTCTCA-------GGAATGGTGTGCATCAAAAGGCAGGAAGACCTTG-CAAGTCTGTCCCATCAAGCCACCAGACGCTGGTTACCTTTATGTGGTTGCACAAAAGGTCGAGTTCTCCAGGAGGAGTGAGGTGATCTGTGACCTTCGGAGCTGGGGT-GAACCGAGGCCTGAGAAGC--------------AAGG----------CTACCACAGGAAGTGGGGATCCT-CCTGCTGAGAGAGGGACTTGGAGCCGGAGCCGGAGCCAGGGCCTCTG----CTCCCTCAG--GGAGTAAGTGGTATTTTTGTTCTTGTTTCCTTTCTTCTTT---------TTCTCCCTCATACATT-CCCCAAGGAAGTATTAAAAATGTACTGCAAACCCCAGA-------------------ACAGACAAGAGTGGGCAACCTTCCTTTAAAACCTGACATGTCGAAGGCCCA-----GTCCTGGCCAGTCGCCCTCCTCCTGCCGGCTGTGCCTGAGTGCTGGCTGAGGGGCCCAGGGCACCAGCTCCCTGTCCCGGGCTTCCTGGGGACGGGGAG---AGAGAGG-----TAGAGCCAGG--------------CCATC--AAGTCAGGCTT----AGTCATAAT----TG-CCCGTCTGGAGTTCTCTGC----------------GAAGAAAGAA----AGAATCTCTCAGTGGGCTGAAGGAGAATCTTTGTAGATGGAGGGAGAGGTAACAGCAGGTTCGCCAGGGA a score=1818.0 s hg17.chr17_random 1190589 7 + 2618010 ACCATGG s panTro1.chr19 15607079 7 - 82489036 ACCATgg s mm5.chr11 106633614 6 + 121648857 A-CATGG s rn3.chr10 96327615 6 + 110733352 A-CATGG a score=25083.0 s hg17.chr17_random 1190596 306 + 2618010 TGgggcatggtggctcctgcctgtattcccagcactttgggaggccaaggtgggccgatcacttgaggccaggagtttgacaccagcctgaccaacaaggtgaaatcccttctctactaaaaatacaaaaattagccgggcatggtggtgagcacctgtagtctcagctacttgggaggctgaggcaggagaatcacttgaacccaggaagcagaggttgcaatgagccgagatcgtgccactgcactccagcctgggtgac--agtgagtaagactccgtctcaaaaaaaaaaaaaaagtaaaaGGT s panTro1.chr19 15607086 307 - 82489036 tcgggcatggtggctcctgcctgtattcccagcactttgggaggccaaggtgggccgatcgcttgaggccaggaattcgataccagcctggccaacaaggtgaaatccctcctctactaaaagtacaaaaattagccagatgtggtggtgggcacctgtagtcccagctactcgggtggctgaggcaggagaatcacttgaacccgggaagtggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcaacagagtgagtgagactctgtctc-aaaaaaaaaaaaaagtaaaaGGT a score=1488.0 s hg17.chr17_random 1190902 17 + 2618010 TGGCCAGGGAGCCTTGC s panTro1.chr19 15607393 17 - 82489036 TGGCCAGAGAGCCTTGC s canFam1.chr9 46498110 7 - 53642819 TGGC----------TGC a score=31811.0 s hg17.chr17_random 1190919 89 + 2618010 TGGCCTCCTG-AAGGCAGCCAAACATTAAAC-ACACCTGCAGTCACAGAGTCCA-GCTTAAGAAAGAGGCAGACCAGGAAGTGAAAGTGAAG s panTro1.chr19 15607410 89 - 82489036 TGGCCTCCTG-AAGGCAGCCAAACATTAAAC-ACACCTGCAGTCACAGAGTCCA-GCTTAAGGAAGAGGCAGACCAGAAAGTGAAAGTGAAG s mm5.chr11 106633620 90 + 121648857 TAGCCTTCCA-AAGGCAGCTGGGTATTAAAA-ACACTTAAAGTCACACAATTCATGCTTAAAGGGCGAGCAGAGTAGAAAGTGAAAGTAAAG s rn3.chr10 96327621 88 + 110733352 TGGCCTTCCA-AAGGCAGCTGTGTATAAAAA-ACAC-TAAAGTCACACAAGTCACTCTGAAAGGGCAAGCGGAGTCGAAAGTGAAAGT-AAG s canFam1.chr9 46498117 92 - 53642819 AGGCTTTCTGAAAGGCCACTATAGGTAAAAATTCACTGGTGGTCCCAGGATGCCTGCTTAGGACAGAAGCAACCCAAAACATGAAAGAAAGG a score=13203.0 s hg17.chr17_random 1191008 125 + 2618010 AAAGAACGGGAGGAGAGA---TGGGTGGGGGCGCGGATCAAGGCAGAAAAGGGAGGCAAAAGGCAACGCTGCTAGGGACAG-AGAGTGGTGACGTGCCAGCTTCTGTTCGTTAAAA-CCCTGCTCTGGAC s panTro1.chr19 15607499 126 - 82489036 AAAGAACAGGAGGAGAGA---TGGGTGGGGGCGCGGATCAAGGCAGAAAAGGGAGGCAAAAGGCAACGCTCCTAGGGACAG-AGAGTGGTGACGTGCCAGCTTCTGTTCGTTAAAACCCCTGCTCTGGAT s mm5.chr11 106633710 102 + 121648857 AAGTGGCTGTAAGAAATA--GCGGATGGAGGGGCAG---GGGGCAGA-----GGGGCA--------------TGGGAGCAG-GGGGCGATGGCATGCCAGCTCCTGTTTGC--AAG-GCCTGGTTAGGGC s rn3.chr10 96327709 79 + 110733352 AAATAGCGG--------A---TGGAGGGGAAGGAAG----AGTCAGA-----GGGGCAG--------------AGGGGCATCGGAGTGGATGTTTGC----------------AAG-GTCTGCTTAGGGC s canFam1.chr9 46498601 94 - 53642819 aAAGAACAAGAGAGCAGAACATGAGGAGGGACAGGG----AGGCAGAGAAGGAGACCCAAGGCCACCG----TAGGGACAG-AGGGC--------------------------AGG-GCCTGCTCAGGGC a score=300.0 s hg17.chr17_random 1191133 1 + 2618010 C s panTro1.chr19 15607625 1 - 82489036 C s mm5.chr11 106633812 1 + 121648857 C a score=44.0 s hg17.chr17_random 1191133 8 + 2618010 CATGAACA s canFam1.chr9 46498695 8 - 53642819 TACTGACG a score=805.0 s hg17.chr17_random 1191134 7 + 2618010 ATGAACA s panTro1.chr19 15607626 7 - 82489036 ATGAACA s canFam1.chr9 46498696 7 - 53642819 ACTGACG a score=7321.0 s hg17.chr17_random 1191141 30 + 2618010 CTGCTAGGCAATTTTGTTATGACAGCTCCT s panTro1.chr19 15607633 30 - 82489036 CTGCTAGGCAATTTTGTTATGACAGCTCCT s rn3.chr10 96327788 30 + 110733352 CTTCTAGAAGACTTAGTTATGACGCTAACT s canFam1.chr9 46498703 30 - 53642819 CTGCTAGAAGCTTGAGTAATCACGGCTCAT a score=8429.0 s hg17.chr17_random 1191171 31 + 2618010 TGCATCCtcc-cagcattttacagctaaggaa s panTro1.chr19 63522779 31 + 82489036 TGCATCCtcc-cagcattttacagctaaggaa s rn3.chr10 96327820 32 + 110733352 TGCGCTCACCGTGACCTCCCACAGTGAAGGAA s canFam1.chr9 46498733 31 - 53642819 TGCATCTCCA-TAGcattttacagataagaaa a score=1949.0 s hg17.chr17_random 1191202 10 + 2618010 actgaagacc s panTro1.chr19 63522810 10 + 82489036 actgaagacc s canFam1.chr9 46498764 10 - 53642819 actgagaccc a score=-67.0 s hg17.chr17_random 1191202 27 + 2618010 actgaagaccatgagg--------------ttaaatt-------------------cttc s canFam1.chr9 46498764 60 - 53642819 actgagacccatgagggaccacaggctgaatcagatttgaagctaggactgtctgactcc a score=-578.0 s hg17.chr17_random 1191212 17 + 2618010 atgagg--------------ttaaatt-------------------cttc s panTro1.chr19 15607780 16 - 82489036 ATgagg--------------ttaa-tt-------------------cttc s canFam1.chr9 46498774 50 - 53642819 atgagggaccacaggctgaatcagatttgaagctaggactgtctgactcc a score=5208.0 s hg17.chr17_random 1191229 61 + 2618010 ---acccgaggccca------cagctagggattagcagaatcagcatttaaacccaaggctgcctgactc s panTro1.chr19 15607796 59 - 82489036 ---accc-aggctt-------tagctagggattagcagaatcagcatttaaagccaaggctgcctgactc s rn3.chr10 96327852 62 + 110733352 ---ACCCACAGCCCACCC---TAGCTAATCCTTGG--AAATCAGGACCAGAACCCAGGGCAGCCAGATCC s canFam1.chr9 46498824 69 - 53642819 agcgtcc-aggcttttctacAAATCTGTGTTCCGTCAGGAGCTGCCTCAGAGCTGCAGGCTGCCTGCTTC a score=-6637.0 s hg17.chr17_random 1191290 23 + 2618010 ---------------------------------------------------caGTGTCACACCCAAACT-------------------------------------------------------------------------------------TCCTA s panTro1.chr19 15607855 25 - 82489036 ---------------------------------------------------caatgtcacacccaaactc-----------------------------------------------------------------------------------ttccta s canFam1.chr9 46498893 159 - 53642819 GGGTCCACGTTTGATCCAGACCTGCTTTTCGTTACTTGTGATTTAAAAAATAACCATCACACAAAAAAACATTTTAAGTAATAAAGTCGACATATATTGACAGGGTATATATCAAATAGGAGCCAAAGAAACAGCAGCTTAAACGAGTGAAGTTTCCAA a score=78495.0 s hg17.chr17_random 1191313 351 + 2618010 TCTCTCTGTTAGCAGTTCTTAGTTGCTGGGGATTCAGACTC----TATTTTGTTGCT-------------TGTATAGTTCAATA---CTCCCCA----CA----------CTGT-GGCCACATTGCAGCCTGCAG--AGGCAATAAAA-----GGGAGGGGAAGGCATGCATTTCCTCTAAGGGCACAGCCCAGTGGCTGAATACATCATTTCTTCTCACACTTTACACACTGGAATGTAGTCATAAGAGCCACATCTGGGGGCAAATGGATTATAGGTGAGCCTAAGAGGTTGCTCCCCTCGGCCCTTCAGGCAGACCTGAGATAATGGGTGTCTCT--------------AGCCACAGGGAGCAGG-TTCATTACCCCAGCACACCATGC----AAAGGAATGACTTTCT s panTro1.chr19 15607880 354 - 82489036 TCTCTCTGTTAGCAGTTCTTAGTTGCTGGGGATTCAGACTC----TATTTTGTTGCT-------------TGTATAGTTCACTATAGCTCCTCC----CA----------CTGT-GGCCACATTGCAGCCTGCAG--AGGCAATAAAA-----GGGAGGGGAAGGTATGCATTTCCTCTAAGGGCACAGCCCAGTGGCTGAATACATCATTTCTTCTCACACTTTACACACTGGAATGTCGTCATAAGAGCCACATCTGGGGGCAAATGGATTATAGGTGAGCCTGAGAGGTTGCTCCCCTCGGCCCTTCAGGCAGACCTGAGATAATGGGTGTCTCT--------------AGCCACAGGCAGCAGG-TTCATTACCCCAGCACACCATGC----AAAGGAATGACTTTCT s mm5.chr11 106635921 378 + 121648857 TCTCTCTGTCACCAGTCCTTGGTTACAGGCAATGCAGTCTCTTTTTACTTTGTTGCT-------------CATCCATCCCAAAGGTATGGCTCA----CATGGGTCAGGCCTGTAGGGTCCATTTCAGCCAGAAGGAAGGAGATGAAAGCGGGGGGAGGGGGGGGCAC---TATCTTTTAAGCGCATGGCCCAGAAG-TGAACACATTCTTTCCCCTTGAATTTTACAAGCTGGAGTACAATGATGATAGCCACAACTAGAGACAATTGGATTGTAAGTGAGCCAGAGAAGGTGA-CCAGGTGGCTTTTCAGGCAG-----------TGGGTGACTCTAAACTGCCATTTCCAACTACAGCAGCTTGA-CTCTCTTCCCCAGCACATCATGTTCTAACAGAAATTTCTCTCT s canFam1.chr9 46499054 366 - 53642819 TCTCTCTGTTAGCAGTCATTagttgtcagggattctggctctttctctcttgttgctgccccttcccgaggggatggcctgagg---tggttcaagctca----------ctgt-gttcccattcccggcagcagaaagggaagggag-----gggaggcg-gggcatacctttc--ctaagggcaccgcctggggcttgaacacatcatttcacctcacattttatagaccagactgtagtcataaaagccacatctaggggcaaatggatgacagatgagtctgaaataccgc------tgggcagccagggaggcccagcGTGAAGGGCGTCTCC--------------TGCTCCAAGCAACTGGCTTCATTACCCCAGCATACCCTGC----AAAAGTATGACTTTCT a score=3748.0 s hg17.chr17_random 1191664 38 + 2618010 CTAGGAGTATCGTCCTGTGCAAAAATTGGGCTCCACTG s panTro1.chr19 15608234 38 - 82489036 CTAGGAGTATCGTCCTGTGCAAAAGTTGGGCTCCACTG s mm5.chr11 106636299 32 + 121648857 ------GTGCTGTGATGCACCCAAGACTGGTGTCCCTG a score=18306.0 s hg17.chr17_random 1191702 43 + 2618010 ACTTAGAAAACTAAAACTAGGTGGCCTAGAAGTCTGGAAAAAG s panTro1.chr19 15608272 43 - 82489036 ACTTAGAAGACTAAAACTAGGTGGCCTAGAAGTCTGGAAAAAG s mm5.chr11 106636331 41 + 121648857 CCTTATAAAACT--GACCAGTTGACCTAGAGGTTGGAAAAAAG s rn3.chr5 56706442 43 + 173106704 ACTTACAAAAATGTGCCCAACTGGCATAGAGATCTGGTACGGG s canFam1.chr30 25095627 43 + 43165425 ACTTACAAGAATGTGCCTAACTGGCATAGAGATCTGGTACGAG a score=35136.0 s hg17.chr17_random 1191745 61 + 2618010 AATAGGAAAACATTCCCATGGTGTTGTCGGTGGGAA-AAAATGGATATCAAGGACAAGAGTG s panTro1.chr19 15608315 61 - 82489036 AATAGGAAAACATTCCCATGGTGTTGTCGGTGGGAA-AAAATGGATATCAAGGACAAGAGTG s mm5.chr2 139738467 60 - 181686250 TGTGTGAAAACATCCCCATTGTATTGT--GTGGCAACAAAGTGGATATTAAAGACAGGAAAG s rn3.chr5 56706485 60 + 173106704 TGTGTGAAAACATCCCCATTGTGCTGT--GTGGCAACAAAGTGGATGTTAAAGACAGAAAAG s canFam1.chr30 25095670 60 + 43165425 TGTGTGAGAACATCCCCATTGTGCTGT--GTGGCAATAAAGTGGATATTAAGGACAAAAAAG a score=28048.0 s hg17.chr17_random 1191806 302 + 2618010 ATggtcaggcatggtggctcacatctgtaatcccagcattttgggaggctgaggcaggcagatcacttgaacccaggagtttgagaccagcctgggcaaaatggcaaaactccgtctctac-aaaaaatatttttaaaaattagctgggcgtggtggcatgcacctgttgtctcagttactcaggtggttgcagagggagcctgggaggtcaagactacagggagccaagattgcaccagcactactgcactccagcctgggtgacagagtgagattctgtctcaaaaaaagagtaaaaaaaG s panTro1.chr19 15608376 303 - 82489036 ATggtcaggcatggtggctcacatctgtaatcccagcattttgggaggctgaggcaggcagatcacttgaacccaggagtttgagaccagcctgggcaaaatggcaaaactccgtctctacaaaaaaatatttttaaaaattagctgggcttggtggcatgcacctgttgtctcagttactcaggtggttgcagagggagcctgggaggtcaaggctacagggagccaagattgcaccagcactactgcactccagcctgggtgacagagtgagattctgtctcaaaaaaagagtaaaaaaaG a score=1747.0 s hg17.chr17_random 1192108 10 + 2618010 GACAAGAGTG s panTro1.chr19 15608679 10 - 82489036 GACAAGAGTG s mm5.chr11 106636894 10 + 121648857 AAAAAGATTG a score=3652.0 s hg17.chr17_random 1192118 40 + 2618010 TGAAGACAAACTCCATCAA---------------------------CTTTC----------ACAAAAAGATAATCAT- s panTro1.chr19 15608689 40 - 82489036 TGAAGACAAACTCCATCAA---------------------------CTTTC----------ACAAAAAGATAATCAT- s mm5.chr11 106636904 77 + 121648857 GGTGGAAGAATACTATCAAGGCCAAGAAAATTAGAACACAAATAGGCTTTTTAAAAATAAAACAAAATGGTTGTCAT- s rn3.chr5 56706545 41 + 173106704 TGAAGGCGAAGTCTATTGT---------------------------CTTTC-------ACCGCAAGAAGA--ATCTT- s canFam1.chr30 25095730 41 + 43165425 TTAAGGCAAAATCTATTGT---------------------------CTTCC----------ACCGAAAGAAGAACCTT a score=27447.0 s hg17.chr17_random 1192158 53 + 2618010 CAATACAGGGACATTTCTGCCAAAATTAATTGCAACTTGGGGAAACCCTTCTT s panTro1.chr19 15608729 52 - 82489036 CAATACAGGGACATTTCTGCCAAAATTAATGGCAACTT-GGGAAACCCTTCTT s mm5.chr11 106636981 43 + 121648857 ---------GACATTTTCCTCAAAACTAATTAGGAATT-GGGAAGCCCTTCTT s rn3.chr5 56706586 53 + 173106704 CAATACTATGACATTTCTGCCAAAAGCAACTACAACTTTGAGAAGCCCTTCCT s canFam1.chr9 46499661 52 - 53642819 cAGCACAAGGACATTTCTTCCAAAACTAATTGCAACTG-GGGAAACCCTTCCT a score=5275.0 s hg17.chr17_random 1192211 24 + 2618010 TAAATTGGTGAGAAAATAAGAAAA s panTro1.chr19 15608781 24 - 82489036 TAAATTGGTGAGAAAATAAGAAAA s mm5.chr11 106637024 23 + 121648857 T-GGCTAGCTAAAATATAAGAACA s canFam1.chr9 46499713 24 - 53642819 TTAATTGGCTAGAAAATAAACAAC a score=573.0 s hg17.chr17_random 1192235 2 + 2618010 Ag s panTro1.chr19 15608805 2 - 82489036 Ag s canFam1.chr9 46499737 2 - 53642819 AG a score=28652.0 s hg17.chr17_random 1192237 314 + 2618010 gcctggtgcagtggctcacccctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctaccaagaaatgcaaaaattaactggatgtggtggcacatgcctgtaatcacagctacttgggaggctaaggcaggagaattgcttgaacccgggaggggcaggttgcagtgagccgagatcgcaccactgcactccagcctgggcgacaagagtgaaactccatctcaaataaataaataaataagaacaaaGATTTT s panTro1.chr19 15608807 310 - 82489036 gcctggtgcagtggctcacccctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctaccaagaaatgcaaaaattaactggatgtggtggcacatgcctgtaatcacagctacttgggaggctaaggcaggagaattgcttgaacccgggaggggcaggttgcagtgagccaagatcgcaccactgcactccagcctgggggacaagagtgaaactccatctc----aaataaataaataagaacaaaGATTTT a score=1984.0 s hg17.chr17_random 1192551 82 + 2618010 AAAATCCTAAATAGta------------tatatatata-tatatat------acaca--------------cacactatatat-atatatata---tatatat-atatatata-----tatatat-- s panTro1.chr19 15609117 110 - 82489036 AAAATCCTAAATAGTATGTGTGTGTGTGtatatatatattatatatatat-aatata--------------tacactatatataatatatatacactatatataatatatatacacactatatat-- s mm5.chr11 106637047 110 + 121648857 AAAAATTTAGATAGTG------------TATTTATATA-TAAAGAGAGATAAGCATAGTCGTGTAGATTGTTTTATTATGTGT-ATGTGTGTC-ACTGTGGAT-GTGTGTGTGTGTC-TGTATGTCT a score=-220.0 s hg17.chr17_random 1192633 41 + 2618010 atatatatacac-----------acacatat-tat------------------atatatttatataAAGTG s panTro1.chr19 15609227 42 - 82489036 a-atatatacact----------atatatatacat------------------atatatttatataAAGTG s mm5.chr11 106637324 70 + 121648857 AGGTCTATAGAATTTCAAGGTCCAAACATGT-GATAACCCCGAAGCATTCCTAATGAACATGTGACAAGTG a score=13892.0 s hg17.chr17_random 1192674 54 + 2618010 AATTCATTAGGGAATTTTTAAAAATTAAAATGATCAAGTAAGATTTATCTCAGA s panTro1.chr19 15609269 54 - 82489036 AATTCATTAGGGAATTTTTAAAAATTAAAATGATCAAGTAAGATTTATCTCAGA s mm5.chr11 106637394 51 + 121648857 AATTCATCTGGGAA---TAAAACAATAAAATACTTGACAAAGATTGATCTCAGA s canFam1.chr9 46500015 52 - 53642819 AATCTTGtaaaaaatttttaaaaattaaa--tatcaagtaagatttatcactgg a score=2105.0 s hg17.chr17_random 1192728 16 + 2618010 --TTAGCAGGGGTTACTA s panTro1.chr19 15609323 16 - 82489036 --TTAGCAGGGGTTACTA s canFam1.chr9 46500067 16 - 53642819 aatt--caaggattgtta a score=2656.0 s hg17.chr17_random 1192744 28 + 2618010 CAACGAAGGACATCCCCTCAAAATAGAA s panTro1.chr19 15609339 28 - 82489036 CAACGAAGGACATCCCCTCAAAATAGAA a score=41355.0 s hg17.chr17_random 1192772 256 + 2618010 TCCTGGAAAATGTGTAGTGGGGATGGaatgggtcaagtgcaatcaatggcattcagtggcattaaaatcacacaaattatcagcagtggcatgggatgaagggtaggtatagaggataaggcactgggatttggaatggcttgggcacttagacactgtgacagtgatggtcagtataaagattat--agagtcacttggcctctctcaacagcactggagagattacacagggaaaaggaaaagtcaaaagctatga s panTro1.chr19 15609367 258 - 82489036 TCCTGGAAAATGTGTAGTGGGGATGGAATGGGTCAAGTGCAATCAATGGCATTCAGTGGCATTAAAATCACACAAATTATCAGCAGTGGCATGGGATGAAGGGTAGGTATAGAGGATAAGGCACTGGGATTTGGAATGGCTTGGGCACTTAGACACTGTGACAGTGATGGTCATTATAAAGATTATAGAGAGTCACTTGGCCTCTCTCAACAGCACTGGAGAGATTACACAGGGAAAAGGAAAAGTCAAAAGCTATGA s canFam1.chr9 46500640 240 - 53642819 TCCTTGAAGG-GAATGATGGGCATGGAATGTGTCCCGTGAAA----------TCAGCGGCATTATAATCACTCAACTTACGGGCAGTAGCA-GGGACGAGAGGCAG--CTGGTGGATAAGGCACCAGGATTTGCAGTGACTCGGGCCCTTAGTTACTAGAACAATTTTGCTCGTTTCACTGATCGT----GGTCACTTGACTTCTTCTGGCAGTCCTGAGGAGGACACACCGGGAAAAGGAAAAATTGAAAGTCATGG a score=55158.0 s hg17.chr17_random 1193028 605 + 2618010 atgagggcctggcacagtggctcatgcctgtaatcctagcactgtaggaggccgaggtgggtggatcacttgagatcaggagttcgagaccagcctgagaaacatggcgaaacccagtctctacaaaaaaacacaaaaattagctggatgtggtggctcgtgcctgtagtcccagctacttggggggctgaggcaggagaatcacttgaacccaggaggtggaggcttgcagggagccgagatctcaacactgcactctactgggtgatagagtgagatcctgtctccaaaaaaaaaggaaaaaaaaaaggccgggcacggtggctcatgcctgtaatcccagcactttgggagaccaaagcaggc-gatcacctgaggttgggagttcgagaccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagccaggcatggtggcatgtgcctataatcccagctactcgaaaggctgaggcaggagaatcgcttaaacccgggaggcgggggttgcggtgaggccagatcatgccattgcactccagcctgagcaacaggagtgaaactccatctcaaaag---aaaaaaaagc s panTro1.chr19 15609625 608 - 82489036 ATGAGggcctggcacagtggctcatgcctgtaatcctagcactgtaggaggccgaggtgggtggatcacttgagatcaggagttcgagaccagcctgagaaacatggcgaaacccagtctctacaaaaaaacacaaaaattagctggatgtggtggctcgtgcctgtagtcccagctacttggggagctgaggcaggagaatcacttgagcccaggaggtggaggcttgcagtgagctgagatctcaacactgcactctactgggtgatagagtgagatcctgtctccaacaaaaaagg-aaaaaaaaaggccgggcacggtagctcatgcctgtaatcccagcactttgggaggccaaggcaggcggatcacctgaggttgggagttcgagaccagcctgaccaacatggagaaaccctgtctctactaaaaatacaaaattagccaggcatggtggcatgtgcctatgatcccagctactcgaaaggctgaggcaggagaatcgcttaaacccgggaggcgggggttgcggtgaggccagatcatgccattgcactccagcctgagcaacaggagtgaaactccatctcaaaagaaaaaaaaaaaGC a score=66176.0 s hg17.chr17_random 1193633 481 + 2618010 tgttaatgttgaactgagaatgcaatagacagcaagaaaggtttggtggcatcttagaaggagacttcatctcctgtactttcagggtggatatgatggaagactcagtccagggcctcattgtgcatgtaagagctccaaataaatgcttaggaaagggcatagtggggacgtagtgggaccttgagacttagaataggagcatctaaatggtcacagacaaggctgagactttggcacttttgaattctcaaa-----tcctgtctgttcaggtaagtcctcccgtg-tagaggtaaccaacttatccctgcctaagggaccttctgtgactgcacctaggacagttgcttcactaaaaagggactccagatcttctcttcaTTCCTCCAGCTTCAAAAAGAGAGTTAGATCCCAACATAGCCCACTTGGGCAGTACAAGGCCTGCTCTAGAAAGAGAATGTTTATACACTAAGGTAGTTCCAAG s panTro1.chr19 15610233 481 - 82489036 TGTGAATGTTGAACTGAGAATGCAATAGACAGCAAGAAAGGTTTGGTGGCATCTTAGAAGGAGACTTCATCTCCTGTACTTTCAGGGTGGATATGATGGAAGACTCAGTCCAGGGCCTCATTGTTCATGTAAGAGCTCCAAATAAATGCTTAGGAAAGGGCATAGTGGGGACGTAGTGGGACCTTGAGACTTAGAATAGGAGCATCTAAGTGGTCACAGACAAGGCTGAGACTTTGGCACTTTTGAATTCTCAAA-----TCCTGTCTGTTCAGGTAGGTCCTCCCGTG-TAGAGGTAACCAACTTATCCCTGCCTAAGGGACCTTCTGTGACTGCACCTAGGACAGTTGCTTCACTAAAAAGGGACACCAGATCTTCTCTTCATTCCTCCAGCATCAAAAGGAAAGTTAGATCCCAACATAGCCCACTTGGGCAGTACAAGGCCTGCTCTAGAAAAAGAATGTCTATACACTAAAGTAGTTCCAAG s canFam1.chr9 46500880 380 - 53642819 TG-----GTCGAACTAAGAATGCAGTGGTCAGTGAGAAAGGCTTGGTGGTAGCTTTGAAGAAGCCCTCATCTTCTGTCCTTGCA-GATAGATGTAGCTGAAGACAGAGCCCACGGCCTCACTGTACatgta---------------------------------------------------------------------------------------------gcagaaaccttga-actctcaaattccctgaacctcccctgccagctcaggtggtccttccctttctggaggggcttgacttttcactgccctagaggctcta-gtgact--actcaggacagctgcttcac--agaggggatgccaaatctcctcctcaaTCTCCCAGGCTCGAAAGGAGAGTTAGATCCCAACACATCTGA-TGGGGAAGTTCAAGTCCTCTGCCAG-AAGGGATAGTCTATACACAGAAAGAGTTGCAGG a score=15250.0 s hg17.chr17_random 1194114 87 + 2618010 ACCTTGCCAATTCAAATCCACAACGCTCTTGGGAGCACGTGTGGGAGTGGATTCTAAGCAT--TGTTAGCCGAAAGATGGTAAATACAA s panTro1.chr19 15610714 88 - 82489036 ACCTTGCCAATTCAAACCCACAAGGCTCTTGGGAGCACGTGT-GGAGTGGATTCTAAGCATTGTGTTAGCCGAAAGATGGTAAATACAA s canFam1.chr9 46501482 83 - 53642819 accttgccaattcaaat---caagagtcttgggagcatatatggaaatggattctacaca---tcatagcccaaggagggtaaatacaa a score=26817.0 s hg17.chr17_random 1194201 304 + 2618010 GGCTTggctgggcgcagaggcttgcgcctataatcccagcactttgggaggctgacgcgggcagatcaccaggtcaggagtttgagaccatcctggccaacatggtgaaacctgtttctactaaaaatacaaaaaattagccaggtgtggtggtggatgcatgcctgtagtcccagctactcaggaagctgcggcaggagaatcccttgaacccaggaggcagaagttgcagtgagcacagatcgtgccactgcactcccgcctgggcgaaagagtgagactctgtctcaaaaataaaataaaa s panTro1.chr19 15610802 303 - 82489036 TGCTTggctgggcacagaggcttgcgcctgtaatcccagcactttgggaggctgacgcaggcagatcaccaggtcagaagtttgagaccatcctggccaacatggtgaaacctgtttctactaaaaatacaaaaaattagccacgtgtggtggtggatgcatgcctgtagtcccagctactcaggaagctgaggcaggagaatcccttgaacctaggaggcggaagttgcagtgagcacagatcgtgccactgcactctagcctgggcgaaagagtgagactctgtctcaaaaat-aaataaaa a score=20339.0 s hg17.chr17_random 1194505 106 + 2618010 GGCTTGATTGGGCTGAATTCACTG------ATACACTCACCCAGGTTTGGGCTTTGGAGTT-GGCATGAATAAT---CTACAATGGCTAAGTTG------GACTTAATAGAGACGTGAAGTT s panTro1.chr19 15611105 111 - 82489036 GGCTTGATTGGGCTGAATTGACTG------ATACACTCACCCAGGTTTGGGCTTTGGAGTT-GGCATGAATAAT---CTACAATGGCTAAGTCGGGACTTGACTT-ATAGAGACCTGAAGTT s canFam1.chr9 46501565 121 - 53642819 ggcttccttgggctgaatttgctgacatgaatatactcactcaggtttgggctttggagttaggcatgaataatctcctacaatggctaattca-gactggatttaatagcgacctaaagtt a score=118810.0 s hg17.chr17_random 1194611 1466 + 2618010 ccaccacccagaagcagctggcttagaaagcggtgaaatagctgctgaaagttaatttacagggttagcctaaagacgacaccccgtgggcttcaagtgttggcctacaggat--agttatgtcttttaaaacatgctaacatttggagttgtcaccttcataactagaaagtgtacatctagaggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccga----ggggggtggatcaggtggtcaggcgtttgagaccagcctgaccaaaatggtgaacccctatctctactaaaaatacaaaaattagccaggcatggtggcagacccctgtaatcccaggttatttgggaggctgaggcaggagaatcgcctgaacctgaaaggcagaggttgcagtgagccaagatcgcaccaccacactctagcctgtgac-agagtaagactgtctcattaaaaaaaaaaaaaaaaaaaaagcgtacatctaggaaacaggatgaagaagtagctgctctcactcttacaccta------------aactcttgctgcccatccctattgtgtccagaattggtgggtttgtggtctcactgacctcaagaataaggccgcggaccctctcggtgagtgttacagttcttaaaggcgga-gttgtccgtagtttgttccttctgatgttcagatgcatttggagtttttttcttctggtgggtccctggtctcgctgattcagaaatgaagctgcaaaccttcacggtgagtgtcacagctcttaaagctgcacaactgaagttggtcgctcctgacggtgggttcgtggtctcactggcttcaagagtgaagctgcaaactttt---gtgttacagctcataaaagcaacataaaccataacagtgagcaataacaagacttactgcaaagtgcaaaaaaaacaaacctcccagactatcaaacaggacacaagcagattcccgctgctggcttgtgcagcctgcttttattctcttatctggccccacccacatgctgctgattggtccattttacagagagccaattggtctgttttacaaagagctgactggtccgttttgacagggtgctgattggtgcatttacaatcccttagctagacacaaaagttctccatgtccccactagattagctagatacagagtgtctattggtgtatttacaaaccctgagctagacacagagtgctgattggtgtgtttacaaaccttgagctagatacagagtgctgattggtgcattcacaatcccttagctagacataaagaaagattctccaagtccccaccagactaactagatacagagtgctgattagtgcattcacaaaccctgagctagacacagggtgctgattggtgtgtttac-aaaccttgagctagatacagagtgctgattggtgtatttacaatcccttagctagacataaagattc s panTro1.chr19 15611216 1481 - 82489036 ccaccacccagaagcagctggcttagaaagcggtgaaatggctgctgaaagttaatttacagggttagcctaaagacgacaccccgtgggcttcaagtgttggcctacaggatgcagttatgtcttttaaaagatgctaacatttggagttgtctccttcgtaaccataaagtgtacacctagaggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggggggggggtggatcaggtggtcaggcgtttgagaccagccttaccaaaatggtgaaaccccatctctactaaaaatacaaaaattagccaggcatggtggcagatacctataatcccacg-tatttgggaggctgaggcagaagaatcgccttaacctgaaaggcagagattgcagtgagccaagatcgcaccaccacactctagcctatgacaaaagcaagactgtctcat---aaagaaaaaaaaaaaaaaagcgtacatctaggaaacaggatgaaggagtagctgctctcactcttacacgtaagaacactctcgaactctcgctgcccatccctattgtgtccggaattggtgggttcttggtctcactaacttcaagaatgaggccgcggaccctctcgaggagtgttacagttcttaaaggcagagggtgtctgtagtttattccctctgatgttcagatgcatttggagttttttttttctggtgggttcctggtctcgctgactcagaagtgaaactgcagaccttcacagtgagtgttagagctcttaaagctgcacatctggagttgttcgttcctcacggcgggttcgtggtctcgctggcttccagagtgaagctgcaaacttttgtggtgttacagcttataaaggcaacgtaaaccataagagtgagcagtaacaagacttactgcaaagcac-caaagaccaaagcttctacgctatagaacaggacacaagcaggttcccactaccggcttgcgcagcctgcttttattctcttatctggccccacctacatgctgctgattggtccattttacagagagccaattggtctgttttacagagagctgactggtccgttttgacagggtgctgattggtgcatttacaatcccttagctagacacaaaagttctccatgtccccactagattagctagatacagagtgtctattggtgtatttacaaaccctgagctagacacagagtgctgattggtgcatttacaaatcttgagctagatacagagtgctgagtggggtatttacaatcccttagctagacat----aaagattctccaagtccccaccagactaactagatacagagtgcccattggtgcattcacaaaccctgagctagacacagggtgctgattgctgtgtttacaaaaccttgagctagatacagagtgctgtttggtgtatttacaagcctttagctagacataaagattc a score=440144.0 s hg17.chr17_random 1196170 4919 + 2618010 aaaccttgagctagatacagagtgctgtttggtgtatttacaatcctttagctagacataaagattctccaagtccccaccagactcaggagcccagctggcttcacccagtggatcccacatgggggccgcatgtggagttgcctgccagtcccgcgctgtgcgcccgcactcctcatcccttgggtggtgcatgggactaggcgtggtggaacagggggcggcgctcctcggggaggctggggccgcacagaagctcactgcggtggcggggaggttcaggcatggcaggctgcacgtccctgagccctgccccgcagggaggcagctaaggcccggcaagaagtcgaacacagcagctgctggcccaggtgctaagcccctcgctgcccggggcttgcgggccgggggccgctcctagtgcggggcccaccgagcccacgcccacccggaactcgcgctggct----ggcaagcgcagcgcgcagccccggttcccgcccgcgtctctccctctacacctccccgcaagctgagggagccggctccggccttggccagcccaggaaggggctcccacaatgcagcggcgggctgaagggttcctcaagcgtggccagaagtgggcgccaaggccgaggaggccccgagagcgagcgagggctgcaagggctgcccgcatgctgtcacctctcactatgaccttggatttgggagtttgaatattctagtgcctaaggtggggactgtttctaccagggaattgtactaccatggtcatgggtctgataaattggaagctaaggcttccctcaggccatctggagatacttatgtcattgatccagcaggcacggaaggaaAGACAAATAAATATCTTTCCTTTTGGTCACCCAACACCTGAACCTTCTTCCTATATCTCTAGGGTACAAGCAGATGACCTGGGCTCAGCCCTATAAAAACACTCAGCCGCTGgccaggagtggtggctcacgcctgtaattccagcactttgggaggctgaggcaggagaatcgcttgaacccgagaggagaggttgcagtgagccgagacggcgccactgcactccagcctgggcaatagagcaagactcagcctcaaaaatgaaaaaataaaaactaaaaaCACTCAGCCCTAATTCGAATGGAACATGAGTTGCCCCACCTGCAGTGGCATAGGATAGAGTTCCTGGAGCAGGGGCAGCAGTGCTACTGGCAGTCTGAAGGATTCAGTGCTGGAGAGGTGGGAGGAGAAGCAACAGCATCTACAGTTCAGAGAACCAGTCTTCCCCATAATTCAGA-GAGATGCCACTCTCCTCCTCATGAATCATTTTACCGCTAAAGTTGATTCCTATGGCCTGCGACTGACAACTCTTATTGAAACTGTTGTACTGTTCTCTATTTCTCTGTTTTTGAAGTATTCCATAATAAAGAAAATgaataaggaggaaagatgcaggatcatcttaataaaagcagaaaaagcatgcaataacattcaacattcatAAATAACAGTAACAggctgggcgcgctggctcacgcctgtaatctcagtactttgggagaccgaggcgggcggatcacaaggtcaggagttcgaaaccagcctggccaatatggtgaaaccctgactttactaaaaatacaaaaGGGTggctgggcacggtgtctcacgcctgtaatctcagcactttgggaggccgaggcgggcagatcacgatgtcaggagttcaagaccagcctgaccaacacagtgaaaccccgtctctactaaaatacaaaaagttagccaggcatggtggcaggcgcctttaatcccagctgctcgggaggctgaggcaggagactcgcttgaacccgggaggcggaggttgcagtgagctgagattgcagcactgcactccagcctcggcgacagagggaggagactacgtctcaaaaacaaacaaacaaacaaacaaacaaacaaacaGtaataacaaattcgtaggaaactagactagctgccaacttccttaacatgatgaacattttctatcaaaacacgcaggagaaataataatggaaatgtagaagccttctctttaagagcagaaacaaagaatgaaagcccattgtcaccatttctatttaacattgGAGGGCCAggccgggcgcggtggctcatgcctgtaatcccagcactttgggagaccaaggtaggtggatcacttgacgtcaggagttcgagactagcctggccagcatggtgaaaccctgtctctactaaaaatacaaaaattaggcaggcgtggtggcgggcgcctgtaatcccagctactcaggagggtgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagctgagatcgcaccactgaacaccagcct-gggcaacagagcaagactccatctcagacaaaaacaaaaacaaaaaaTCccatttacaatagcaacaaaagttataaaaggcttaagaataaatccagctgggtgcagtggctcacgcctgtaatcctagcactttgggaggctgaggcgggcaaatcacttgaggccaggagtttgagaccagcctggccaacatgatgaaacctctactaaaccaaaaaattagccaggcgtggtggtgtgcacctgtaatcccagctacttgggaggctgaggctgaggctgaggtggaaggactccttaagccaggaggtccgcagaggctgcagtgagccatgatggtgccattgcactccagcctgggcaacagagccagatccagtgt----aaagaaaaaaaaaagtgtagtatttgtgcagggagaaacaaagaacccagtggaacaaaatataaccagaaaatgacccatgccatatgaaaataatatatggcagagaagacattacagatcagtgaaaagaagatagtggtgctggcctaattagttacccaaatgggagaaaatagtttgatccttacttcatagcatacacaaaaacaaattataggtgaattgaagacctaaatgtggaggcaaaactccaaaatgggtagaaaaaatatataagggattttgtttatagcagaatacaaaagagtttctcaaataagacacaaaaaggatagactataaaattattttagaaacttcttaccaaaagaaataaaggaaacaagaaggagaatttaaaagccataacaacagtgaaaataaagccacagactttaagattcattttcagaaaatttgttttaaactcctataaaatcaagaagaaaataacaaacaacccaagtggaaaatgggcaaaggatattaaaaggaaactcacagaatggtcaagggcatgtgaaaagagcctccaaactcattaacagggaaatgaaacttaaaacaacccggaaagaccactttgtatccctcagcttggcaagagcttgaaggactgacaatggcaagtgttggcaaggacacgcaaaaatgggaactcacacacactgctggccagagtgtaaattactacagtcactttgaagaacaatttggccatagctagtaaaatcagtggtgaacaaatccttcagtccaccagttctgcttccggatatacaccataagctcacacacttgcccgaaacggagtaaacaacaatgcccattgtaactctgtctgtactagtaaaaaactgcaaaacaactcaaatattcatcaacagaaggccagagaaacaagttgcatacagttgaaaaaaaaagaacgagagccacatatatcactatggataaatttcaaaaacaaatttgaAAGCATGCTGAAGT-----ttttgttttgttttgttttgttttcagactgagtctcgctctgtcacccaggctggagtgcagtggcacgatcccggctctctgcaatctctgcctcccaggcacaagcaatcctcccacctcagcctcctgcatagctgggactacaggcacgcaccaccacaccttgctactttttTGGgttttgtttttttgttttgttttgtttggagatggaatttcactcttgttgcccaggctgaagagcaatggtgcaatcttggctcaccgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccacgcccagctaatttttgtatttttagtagagatggggtttatccaggttggtcaggctggtctcaaactcctgacctcaggtgatccaccctcctcggcctcccaaagtgttgggattacaagcgtaagccaccacgcctggccAAGTtttttttgtttgtttgtttgttttttggg-tgtttttttgtttt------tttttttttttgGTGGAGACGGGTTCACCATGTTGAtggctttctcaaagtcttaaacacagagttgccctatatcaccttatgacccagaaattccacttctggctattcatctaagagaactgcaaacatacatttacacaaaaaattgtacacaaatgttcatggcagcattattcataaaagccaaaaagtggatataacccaaatgctcttcaactgacaaatggataaaca-aatgtggtatctccatacattggaatgttgcttggcaataaaaaggaatgaagtactgatccatgctacaacagggataaactttgaaaacacactaaatgaaataagccagacacaaaggacaacagagagtatgattccatgtatataaaatgtgcagagtaggcaagtccatagacacagagagtagatgagcagttgcctagggccggggaggaagggatcagtggggagtgactgctaatagatgctcagtctcttttagggaatgaagaaatcttctgaaattagacagtggcgatA s panTro1.chr19 15612829 4905 - 82489036 aaaccttgagctagatacagagtgctgtttggtgtatttacaagcctttagctagacataaagattctccaagtccccaccagactcaggagcccagctggcttcacccagtggatcccacacaggggccgcaggtggagctgcctgccagtcccgcgctgtgcgcccgcactcctcagcccttgggtggtggatgggactgggcgtggtggaacagggggcggcgctcctcggggaggctggggccgcacagaagcccactgcggtggcggggaggttcaggcatggcaggttgcacgtcccttagccctgccccgcggggaggcagctaaggcccggcaagaagtcgaacacagcagctgctggcccaggtgctaagcccctcgctgcccggggcttgcgggccgggggctgctcctagtgcggggcctgccgagcccacgcccacccggaactcgcgctggcccgcaagcaagcgcagcgcgcagccccggttcccgcccgcgtctctccctctacacctccccgcaagctgagagagccggctccagccttggccagcgcaggaaggggctcccacagtgcagcggcgggctgaagggttcctcaagcgtggccaga-gtgggcgccaaggccgaggaggccccgagagcgagcgagggctgcaagggctgccagcatgctgtcacctctcGCTATGACCTTGGATTTGGGAGTTTGAATATTCTAGTGCCTACGGTGGGGACTGTTTCTACCAGGGAATTGTACTACCATGGTCATGGTTCTGATAAATTGGAAGCTAAGGCTTTCCTCAGGCCATCTGGAGATACTTATGTCATTGATCCAGCAGGCACAGAAGGAAAGACAAATA----TCTTTCCTTTTGGCCACCCAACACCTGAACCTTCTTCCTATATCTCTAGGGTACAAGCAGATGACCTGGGCTCAGCCATATGAAAACACTCAGCGCCTGgccaggagtggtggctaacgcctgtaattccagcactttgggaggctgaggcaggagaagcgcttgaacccgggaggagaggttgcagtgagccgagacggcaccactgcactccagcctgggcaatagagcaagactcagcctcaaaaatgaaaaaataaaaactaaaaaCACTCAGCCCTAATTCGAATGGAACATGAGTTGCCCCACCTGCAGTGGCATAGGATAGAGTTCCTGGAGCAGGTGCAGCAGTGCTACTGGCAGTCTGAAGGCTTCAGTGCTGGAGAGGTGGGAGGAGAAGCAACAGCATCTACAGTTCAGAGAACCAGTCTTCCCCGTAATTCAGACGAGATGCCACTCTCCTCCTCATGAATCATTTTACCGCTAAAGTTGATTCCTATGGCCTGCGACTGACAACTCTTATTGAAGCTGTTGTACTGTTCTCTATTTCTCTGTTTTTGAAGTATTCCATAATAAAGAAAATgaataaggaggaaagatgcaggatcatcttaataaaagcagaaaacgcatgcaataacattcaacattcatAAATAACAGTAACAggctgggcgcagtggctcacgcctgtaatctcagtactttgggagaccgaggcgggcagatcgcaaggtcaggagttcgagaccagcctggccaatatggtgaaaccctgactttactaaaaatacaaaaGGGTggctgggcacggtgtctcacgcctgtaatctcagcactttgggaggccgaggcgggcagatcacaacgtcaggagttcaagaccagcctgaccaacacagtgaaaccccgtctctactaaaatacaaaaa---agccgggcatggtggcaggcgcctttaatcccagctgctcgggaggctgaggcaggagactcgcttgaacccgggaggcagaggttgcagtgagctgagattgcagcactgcactccagcctcggcgacagagggaggagactacgtctcaa--------aaacaaacaaacaaacaaaaaaacaGTAATAACAAATTCGTAGGAAAC-AGACTAGCTGCCAACTTCcttaacatgatgaacattttctatcaaaacacgcaggagaaataataatggaaatgtggaagccttctctttaagagcagaaacaaagaatgaaagcccattgtcaccatttctatttaacattgGAGGGCCAggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacttgatgtcaggagttcgagaccagcctggccagcatggtgaaaccctgtctctactaaaaatacaaaaattaggcaggcgtggtggcgggcgcctgtaatcccagctactcaggatggtgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagctgagatcgcaccactgaactccagcctggggcaacagagcaagactccatctcagacaaaaacaa----aaaaaaTCccatttacaatagcaacaaaagttataaaaggcttaagaataaatccagctgggtgcagtggctcacacctgtaatcctagcactttgggaggccgaggcaggcaaatcacttgaggacaggagtttgagaccagcctggccaacatgatgaaacctctactaaaccaaaaaattagccaggcgtggtagtgtgcacctgtaatcccagctacttag------------aaggctgaggtggaaggactgcttaagccaggaggtccacagaggctgcagtgagccatgatggtgccattgcactccagcctgggcaacagagccagaccctgtgtcaaaaaaaaaaaaaaaaagtgtagtatttgttcagggagaaacaaagaacctagtggaacaaaatataatcagaaaatgacccatgccatatgaaaataatatatggcagagaagacattacagatcagtgaaaagaagatagtggtgctggcctaattagttacccaaatgggagaaaatagtttgatccttacttcatagcatacacaaaaataaattataggtgaattgaagacctaaatgtggaggcaaaactccaaaacgggtagaaaaaatacataggggattttgtttatagcagaatagaaaagagtttctcaaataagacacaaaaaggatagactataaaattattttagaaacttcttaccaaaagaaataaaggaaacaagaaggaaaatttaaaagccataacaacagtgaaaataaagccacagactttaagattcattttcagaaaatttgttttaaactcctataaaatcaagaagaaaataacaaacaacccaagtggaaaatgggcaaaggatattaaaaggaaactcacagaatggtcaagggcatgtgaaaagagcctccaaactcattaacagggaaatgaaacttaaaacaacccggaaagaccactttgtatccctcagcttggcaagagcttgaaggactgacaatggcaagtgttggcaaggacacgcagaaatgggaactcacacacactgctggccagagtgtaaattattacagtcactttgaagaacaatttggccatagctagtaaaatcagtggtgaacaaatccctcagtccaccagttctgcttccggatatacaccataagctcacacacttgcccgaaacggagtaaacaacaatgcccattgtaactctgtctgtactagtaaaaaactgcaaaacaactcaaatattcatcaacagaaggccagagaaacaagttgcatacagttgaaaaaaaaagaacgagagccacatatatcactatggataaatttcaaaaacaaatttgaAAGCATGCTGAAGTttttgttttgttttgttttgttttgttttcagactgagtctcgctctgtcacccaggctggagtgcagtggcacgatcccggctctctgcaatctctgcctcccaggcacaagcaatcctcccacctcagcctcctgcatagctgggactacaggcacgcaccaccacaccttgctactttttTGGtttttgtttttttgttttgttttgtttggagatggaatttcactcttgttacccaggctgaagagcaatggtgcaatctcggctcatcgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccacgcccagctaatttttgtatttttagtagagatggggcttatgcaggttggtcaggctggtctcgaactcccgacctcaggtgatccacccgcctcggcctcccaaagtgttgggattacaggcgtaagccaccatgcctggccAAG----TTTTGTTTGTTTGTTTGTTTTTTGGGTTGttttttttttttgttttgtttttttttttGGTGGAGACGGGTTCACCATGTTGAtggctttctcaaaatcttaaacacagagttgccctatatcaccttatgacccagcaattccacttctggctatacatctaaaagaattgcaaacatacatttacacaaaaaattgtacacaaatgttcatggcagcattattcataaacgccaaaaagtggatataacccaaatgctcttcaactgacaaatggataaacagaatgtggtatctccatacattggaatgttgcttggcaataaaaaggaatgaagtactgatccatgctacaacagggataaaccttgaaaacacactaaatgaaataagccagacacaaaggacaacagagagtatgattccatgtatataaaatgtgcagagtaggcaagtccatagacacagagagtagatgagaggttgcctagggctggggaggaagggatcagtggggagtgactgctaatagatgctcagtttcttttagggaatgaagaaatcttctgaaattagatagcggtgata a score=582.0 s hg17.chr17_random 1201189 6 + 2618010 CCCTAG s panTro1.chr19 66885476 6 + 82489036 ccctag a score=21872.0 s hg17.chr17_random 1201195 114 + 2618010 GAACCACTGTTAAGCTCCAGTTTTCTCACTTGAATTTGGCCTGGGGTTGTTCCTGACGACATCAGAGAGAGGT-GCTCTGACCACAGGAACGGGGCAGTGTTGAGTTAGGGAACC s panTro1.chr19 66885482 114 + 82489036 gaacccctgttaagctccagttttctcacttgaatttggccAGGGGTTGTTCCTGACGACATCAGAGAGAGGT-GCTCTGACCACAGGAACGGGGCAGTGTTGAGTTAGGGAACC s canFam1.chr9 7163294 111 + 53642819 GGACTCTTGTTAAACTCTGGTTTTCTCACTTGAATTTGGCATAGGGCTGTCCTGGTC----TCAGAGAAAAGCAGCTGAGACCACAGGAAGGGGGCGGTGTTGAGTCAGAGATTC a score=31507.0 s hg17.chr17_random 1201309 138 + 2618010 CCTCTATCATTAGGACC-AGTATGAAGGTGTCATTGCTACTTGCAAATCACATCTTTATCTGCTTCATTTAGGGATCCTGCTATTGACA-------ATTACACATCTTTAAAAGAAAGACTCTATAGCAGTTGACGATAATGAGAA- s panTro1.chr19 66885596 138 + 82489036 CCTCTACCATTTGGACC-AGTATGAAGGTGTCATTGCTACTTGCAAATCACATCTTTACCTGCTTCATTTAGGAATCCTGCTATTGACA-------ATTACACATCTTTAAAAGAAAGACTCTATAGCAGTTGACGATAATGAGAA- s rn3.chr10 14424997 136 - 110733352 CTTTCACCATTCGGACCTCGTAGGAAGGTGTCAGTGGAACTTGGAA-----AGATTTCTCTGCTTTCTTTAGG-ACCCTGCCACTGGCCTTTTTTTTTTTTTTTTTTTTTTAAGAA----TCTACAGCAGCTGATGATAATGCGAA- s canFam1.chr9 7163405 137 + 53642819 CCACCACCATTTGGAAG-GAGAGAAAGGTGTCACTGATATTTACAAATTATATCTTT-TCAGCTTCATTTTGGAATCTCTCATTTGACA-------ATCAGACATTTCTGAAAAAAAAA-TCTACAGAAGTTGATGATAATGCAGAA a score=30269.0 s hg17.chr17_random 1201447 176 + 2618010 GTTATTAGTTTTAGTTTATTGAAGTGACC---CTTCTAACTCTGTAACCACTTATCTTCCTCTTCCCATTCATCTACTATGAGGTGATA---------------TAATATGTGATATTACCA---------ATATAATTCtaatctatgctttttgtggaaaattcagaaaacatagaagttaaagatgaaaatttgcctgcc s panTro1.chr19 66885734 176 + 82489036 GTTATTAGTTTTAGTTTATTGAAGTGACC---CTTCTAACTCTGTAACCACTTATCTTCCTCTTCCCATTCATCTACTATGAGGTGATA---------------TAATATGTGATATTACCA---------ATATAATTCtaatatatgctttttgtggaaaattcagaaaacatagacgttaaagatgaaaatttgcctgcc s canFam1.chr9 7163542 200 + 53642819 ATTTTTACTTTTAGTTTATTCAAGTGACCTTTCTCCTGACTGTGGAACTATTTCCTTTCCCCTGCTTATCCATCCCATATGGGGTGATATATAAGATGCGCTAGTAACATGTAATATTAATAGTATATGGCATATGATTTTAATAAATGTTCTTTGTGGAAATTTCAGAAAACATGAAAGAAGAAAATGAAAGT---CCTGTT a score=28145.0 s hg17.chr17_random 1201623 308 + 2618010 aaggtggctcacccctgtaattacggcactttgggaggccaaggcaggaggatcacttgaggccaggagtttgagaccagcctggccaacgtggcaaaaccttgtctctactaaaaatacaaaacttagcctggcatgggggtacacacctgtagtcccagctacttgggaggctgaggcaggagactagcttgaacccaggaggcggaggttgcagtgagccgagattgtgccactatactctagcctgggcaacagaacaagattccgtctt-aaaaaaaaaaaaagttgaaaataaaaatctcaga s panTro1.chr19 66885910 309 + 82489036 aaggtagctcacccctgtaattacggcactttgggaggccaaggcaggaggatcacttgaggccaggagtttgagaccagcctgtccaacatggcaaaaccttgtctctactaaaaatacaaaacttagcctggcatggtggtacacacctgtagtcccagctacttgggaggctgaggcaggagactagcttgaacccaggaggcggagattgcagtgagccgagattgtgccactatactctagcctgggcaacagaacaagattccgtcttaaaaaaaaaaaaaagttgaaaataaaaatctcaga a score=39757.0 s hg17.chr17_random 1201931 224 + 2618010 tgatgccatcatctagtgacaaccactgttgacatttggta---------tatttctttTATATTTGCATA-TTTTATCTTACTAATACTCAGTATCTTAACTGTTTT-------AACGatagatgttcatta-tagaaaaaagtggaaaatacaaatatgtca---aagaagaaatagaaatccccatggtcccattatctagaaacaacccta-gttacacttgcatgtgtttcctttaagatg s panTro1.chr19 66886219 233 + 82489036 tgatgccatcatctagtgacaaccactgttgacatttggtatatttcttttatttcttttatatttgcata-TTTTATCTTACTAATACTCAGTATCTTAACTGTTTT-------AACGatagatgttcatta-tagaaaaaagtggaaaatacaaatatgtca---aagaagaaatagaaatccccatggtcccattatctagaaacaacccta-gttacacttgcatgtgtttccttTAAGATG s canFam1.chr9 7163742 225 + 53642819 TGACGGCATCATCTACTGGCACCCATTGTTGACATTTCTT----------TCATTCTTTTTTATTTGAATATTTTTATCT---TAAAACTCAGTACTTAAACTGTTTTATTACTGagtaatagatattcaatgttagaaaaaagtggaaaatacaaatatgcaaaagaagaagaaatagaaatc--------cccattctctagaaatagcctcaggttacaatttggtatgtttcttttaagata a score=10859.0 s hg17.chr17_random 1202155 113 + 2618010 tttaaatcggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagctcgataccagcctgaccaatatggtga s panTro1.chr19 66886452 113 + 82489036 TTTAAATCggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggctgaggcaggtggatcacctgaggtcaggagctcgataccagcctgaccaatatggtga a score=11396.0 s hg17.chr17_random 1202268 198 + 2618010 aaccctgtctctactaaaaatacataaatttgttgggcgtggc-gtgggtgcctgtattcccagctactcgggagaggctgaggca--gaagaatt-gcttgaacctgggagacagaggttgcagtgagccaagatcacaccactggactccagcctaggtgacagagtgagactctgtctccaaaaaaaaaaaaaataaaa s panTro1.chr19 29750782 200 + 82489036 aaccccatctctactaaaaattaaaaaattagctgggcatggtggtgggtgcctgtaatcccaggtacgtgggagaagccgaggcaccggagaatcagctttaactcaggaggcggaggttgcagtgagccgagattgtgccactacactgcagcctgggcgacagagtgaga--ctgtctcaaaaaaaaaaaaaaaaaaaa a score=7004.0 s hg17.chr17_random 1202467 40 + 2618010 tttaaatctgcctatatggtatatttttctgttaagaggt s panTro1.chr19 18987697 40 - 82489036 ttgaaatctgcatatataatatatttttctgttaagagat s canFam1.chr9 7163967 39 + 53642819 tttaaatctgtatataaattacatttTT-TGTTAAGAAAT a score=6073.0 s hg17.chr17_random 1202507 26 + 2618010 gaatttatacagtaatactatatcat s panTro1.chr19 18987737 26 - 82489036 gaatttatacagtaatactatatcac s canFam1.chr9 7164200 26 + 53642819 GAAGTTACACAGTAATACTATATTAT a score=2538.0 s hg17.chr17_random 1202533 27 + 2618010 aaaggttttttccacttaacagcatgt s panTro1.chr19 18987763 27 - 82489036 aaaggttttttccacttaacagcatgt a score=2915.0 s hg17.chr17_random 1202560 11 + 2618010 tggaagcatgt s panTro1.chr19 18987790 11 - 82489036 tggaagcatgt s rn3.chr10 14426915 11 - 110733352 TGGAAAGCGGT s canFam1.chr9 7165598 11 + 53642819 TGGAAAACTAT a score=119296.0 s hg17.chr17_random 1202571 184 + 2618010 tTTAGAGAATATTTAGTGAACTGACTC--TATGTTTTTACATTGTGAAGATTTACTCTGTAAGACTATTATTTCGCCTCTATTTAGAGAAAGTTGCTTGTTTTGGCAATTGCTCTTTTGTTATGAGAATTCACATGAGCCAAGTTCCACTTTCAGAAATGCTATGGGCAAAGCTTCATGATGTTTA s panTro1.chr19 18987801 184 - 82489036 tTTAGAGAACATTTAGTGAACTGACTC--TATGTTTTTACATTGTGAAGATTTACTCTGTAAGACTATTATTTCGCCTCTATTTAGAGAAAGTTGCTTGTTTTGGCAATCTCTCTTTTGTTATGAGCATTCACATGAGCCAAGTTCCACTTTCAGAAATGCTATTGGCCAAGCTTCATGCTGTTCA s mm5.chr11 15036850 185 - 121648857 TTTTGAGAACACAGGGTGAACTAACTCTGTATGTTTTCCTGTTGCGAGGGTTTGCTTGGCAAGACTATTATTTCACCTGTATTTGGAGGGACTTGCTTACTTTGGCAAACTC-CCTTTGTTATGAGAATTCACAGGAACCAGATCCCACATTCAGAAAGGCTCTGGGCCAGGCTTCCCACTGTGCA s rn3.chr10 14426926 185 - 110733352 TTTTGAGAACACAGGGTGAACTAACTCTGTATGTTTTCCTGTTGCGAGGGTTTGCTCGGCAAGACTATTATTTCACCTGTACTTGGAGGGAGTTGCTTGTTTTGGCAGCCTT-CCTTTGTTATGAGAGTTCACAGGAACCAGATTCCACATTCAGAAGTGCTCTGGGCCAGGCTTCACACTGTGCA s canFam1.chr9 7165609 186 + 53642819 TTTAGAGAACGTTCTGTGAACTTACTCTGTATTTTTTCACATTGTGAGGATTTACTCTGTAAGAATATTATTTCACCTGTATTTAGAGAAAGCTGCTTGTTTTGGCAATCTCTCTTTTGCTATGAGAATTCACATGAGCCAAATTCCACTTTCAGAAATGCTGTGGGCCAAACTTCATGCTGTGTA a score=0.0 s hg17.chr17_random 1202755 2 + 2618010 TG a score=335.0 s hg17.chr17_random 1202755 2 + 2618010 TG s panTro1.chr19 18987985 2 - 82489036 TG s mm5.chr11 15037035 2 - 121648857 GG s rn3.chr10 14427111 2 - 110733352 GG a score=3289.0 s hg17.chr17_random 1202757 16 + 2618010 AATTCATACATAAAGA s panTro1.chr19 18987987 16 - 82489036 AATTCATACATGAAGA s canFam1.chr9 7165795 16 + 53642819 AGTTCATATCTAAAGA a score=24940.0 s hg17.chr17_random 1202773 311 + 2618010 CTATAAATTTCagccaggggcaatggctcatgctgataacagctactcgggaggctgaggaaggacaatcgtttgaggctaggaattagagaccagcctgggtaacacagctagattccccgctgtcttcccctctaa----aaataaatacataaataaattagtgtggtggcatgcacctgtaatcctagctactaggaagcctgaggcagggaggatggtttgaacccaggagatcgaggctgcagtgagctatgattatgcaattgcaccccagccttggcaatagagaaagacccCACTCTCTATTTTTT s panTro1.chr19 18988003 312 - 82489036 CTATAAATTTCagccaggggtaatggctcatgccgataatagctactcaggaggttgaggaaggaggatcgtttgaggctaggaattagagaccagcctgggta--acagctagattccct-ctgtcttctcctctaaaaataaataaataaataaataaattagcatggtggcatatgcctgtaatcctagatactaggaagcctgaggcagggaggatggcttgaacccaggagatcgaggctgcagtgagctatgattatgcaattgcaccccagccttggcaatagagcaagaaccCACTCTCTGTTTTTT a score=16130.0 s hg17.chr17_random 1203086 314 + 2618010 AAAAAAGGCTGTAAATT-----------------------------------------------------------------------ggccgggcgtggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggcagatcac--aaggtcaggagttcaagaccatcctggctaacatggtgaaaccctgtctctattaaaaatacaaaaaattagccaggtgtggaggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgagaacccaggaggcggagcttgcagtgagccgagagggcgcctgtgtactccagcctgggcaagagtgagtgagactcc--atcttaaaaaaaaaaaaaa s panTro1.chr19 18988315 379 - 82489036 AAAAAAGGCTGTAAATTTCTGAATGAGTTCATAAGATGAACTACAACTTACTTGTGCCCACTGCCTTTTCTTAGAAATTAACTCCAAAggccaggcgcagtggctcatgcctgtaatcccagcgctttgggaggccgaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgataaaaccccatatctactaaaaatac-aaaaattagcctggcatggtggtgcatgcctgtaattgcagctactcaggaggctgaggcaggagaattgcttgaacccgggaggcagaggtttcagtgagccaaaatggcg-----atacttcagcccaggc--gaccgagcaaaactctgaatc--aaaaaaaaaaagaa a score=484.0 s hg17.chr17_random 1203400 8 + 2618010 aaaaaaaa s panTro1.chr19 18988315 8 - 82489036 AAAAAAGG a score=35691.0 s hg17.chr17_random 1203408 66 + 2618010 CTGTAAATTTCTGAATGAGTTCTTAAGATGAAATACATCTTACTTGTGCCCACTTCCTTTTCTTAG s panTro1.chr19 18988323 66 - 82489036 CTGTAAATTTCTGAATGAGTTCATAAGATGAACTACAACTTACTTGTGCCCACTGCCTTTTCTTAG s mm5.chr11 15037051 66 - 121648857 CTGTAGATTTCTGAATGGGCCCACCAGCTGGAACCCAGCACAGCTGTGCTCAACGGCTTTCCTTGG s rn3.chr10 14427127 59 - 110733352 CTGTAGATTTCTGAATGGGCCCACCAGCCAGAACGCAGCCCAGCTGTGT-------CTTTCCTTAG s canFam1.chr9 7165811 66 + 53642819 CTGTAAATTTCTGAATGGGTTCATAAGATGAAATACAACTTACTTGTGCTCACTGCCTTTCCTTAG a score=1023.0 s hg17.chr17_random 1203474 3 + 2618010 AAA s panTro1.chr19 18988389 3 - 82489036 AAA s mm5.chr11 15037117 3 - 121648857 ACA s canFam1.chr9 7165877 3 + 53642819 AAA a score=1349.0 s hg17.chr17_random 1203477 8 + 2618010 TTAACTCC s panTro1.chr19 18988392 8 - 82489036 TTAACTCC s mm5.chr11 15037120 8 - 121648857 TCAGATCC a score=19847.0 s hg17.chr17_random 1203485 310 + 2618010 AAAggccagtcacggtggctcatgcctgtaatcctagcactttaggaggccaaggtgggtggatcacctgaggtcaagagagtgagaccagcctggccaacatagtgaaaccccatctctactaaaaatacaaaaattagcctggcgtggtggtgtgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaagcagatcttacagtgagccga------gatcatgccactgcactccagcctgggcaaccgagcaagaccccatctcaa--gaaaaaaaaaaaaaag---------aaagaaa s panTro1.chr19 18988400 312 - 82489036 AAAggccaggcgcagtggctcatgcctgtaatcccagcgctttgggaggccgaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatgataaaaccccatatctactaaaaatacaaaaattagcctggcatggtggtgcatgcctgtaattgcagctactcaggaggctgaggcaggagaattgcttgaacccgggaggcagaggtttcagtgagccaaaatggcgat-----------acttcagcccaggcgaccgagcaaaac----tctgaatcaaaaaaaaaaagaaagaaagaaagaaaaGAAA a score=2276.0 s hg17.chr17_random 1203795 9 + 2618010 TTAACTCCA s panTro1.chr19 18988712 9 - 82489036 TTAACTCCA s canFam1.chr9 7165880 9 + 53642819 TTAATTCCA a score=7008.0 s hg17.chr17_random 1203804 24 + 2618010 AAATGTTTTCAATGCCTACATACA s panTro1.chr19 18988721 21 - 82489036 AAATG---TAAATGCCTACATACA s rn3.chr10 14427198 24 - 110733352 GAATGTTTTAAACATCTAAACGCA s canFam1.chr9 7165889 24 + 53642819 GAATGTTTTAAATGCCTACAAACA a score=439.0 s hg17.chr17_random 1203828 8 + 2618010 ATATTTAA s panTro1.chr19 18988742 8 - 82489036 GTATTTAA s canFam1.chr9 7165913 8 + 53642819 GTCATAGA a score=2089.0 s hg17.chr17_random 1203836 45 + 2618010 ACTGTGTGCTTTTTAAAttttgttttgattttttgagacagggtc s panTro1.chr19 18988750 38 - 82489036 ACTGTG------TTTGATTTTGTTTTGA-TTTTTGAGATAGGGTC a score=273.0 s hg17.chr17_random 1204414 3 + 2618010 TTT s canFam1.chr9 7165921 3 + 53642819 TTT a score=4631.0 s hg17.chr17_random 1204417 50 + 2618010 AAACTGTCAGTGATAGCAGCGAATGAGTTCAAATGAATTCAGAAAAAAGA- s rn3.chr10 14427222 50 - 110733352 GAGATGCGAGCGATAGTATCGAATGAGCAGAGATGAACTCAGGAAAGAAA- s canFam1.chr9 7165924 41 + 53642819 AAGCTGCTAATGACAGCAGTGA----------ATGAATTCAGAAAAAAAGA a score=688.0 s hg17.chr17_random 1204467 18 + 2618010 CAT------------ATGGATTAGACCACA s canFam1.chr9 7165965 30 + 53642819 CATCAGTGTTTTCAGATGGGTTAGATCACA a score=25405.0 s hg17.chr17_random 1204509 377 + 2618010 gttttttttt-ttttgagacggagtctcgctttgttgctcaggctggagtgcagtggctgtga-----tcttggctcactgcaacctccacctcccaggttcaagcagttctc-tgcctcagcctcccgagtagctaggattacaggcccatgctaccacacccggctaatttttgtatttttacagt-----cagggtttcaccatcttggccaggctggtctcgaactcctgacctc--gtgatctgcctgcctcggcctcccaaagtgctgagattacaggtgtgagccactgtgtccagccAGTGCCATATTTTCTACTATCCTGGTAAAGTAGATATTTGTACCAAACCCTATCAAACTTGAAATGAATGGAATGTTCTTAATTTT s panTro1.chr19 63498830 382 + 82489036 Gttttgttttgttttgagacggact---actctgtcacccaggctggagtgcagtagc----acaatctctctgcccagtgcaacctccacctcctgggttcaagcgattctcatgcctcagcctcctgagtagctgggattacaggcccacaccaccacacccggctaatttttgtattttta--gtagagacagggtttcgtcatgttgcccaggctggtctcaaactcttgacctcaggtgatctgcccgcctcagcctcccaaagtgctgagatcactggcgtgagccaccacttctagccAGTGCCATATTTTCTACTATCCTGGTAAAGTAAATATTTGTACCAAACCCCACCAAACTTGAAATGAATGGAATGTTCTTAATTTT a score=19005.0 s hg17.chr17_random 1204907 281 + 2618010 tttttttttgagacagagtctcactttgtcacccagggctggagtgcagtggcacaatctcg--gctcactgcaacctccacctcctgggttcaagcgattcttctgcctcagcctcccgagtagctggaactacaggcacatgccaccacgcccggctgattttttgtatttttagtagagacggggtttcaccatgttagccaggatggtctcgatctcctgacct--ggtgatccgcctgccttggcctcccaaagtgctgggattacaggcgtgagccacc s panTro1.chr19 63498836 280 + 82489036 ttttgttttgagacggact---actctgtcacccagg-ctggagtgcagtagcacaatctctctgcccagtgcaacctccacctcctgggttcaagcgattctcatgcctcagcctcctgagtagctgggattacaggcccacaccaccacacccggctaattttt-gtatttttagtagagacagggtttcgtcatgttgcccaggctggtctcaaactcttgacctcaggtgatctgcccgcctcagcctcccaaagtgctgagatcactggcgtgagccacc a score=8907.0 s hg17.chr17_random 1205199 108 + 2618010 CAAGGTGCTATCTTTAAAGATCTTCTCCAGAATGACTTGTGATATCTTTATAGGGG-TAGGGGGTTTCCCCTCAGTATCAGAATTTCTTTACTTACAAGATTATAATCT s panTro1.chr19 63499212 109 + 82489036 CAAGGTGCTATCTTTAAAGGTCTTCTCCAGAATGACCTGTGATATCTTTATAGGGGCCAGGGAGTTTCCCCTAAATATCAGAATTTCTTTACTTACAAGATTATAATCT a score=3861.0 s hg17.chr17_random 1205311 97 + 2618010 AGTAATTATAGAATCTTGTAAGTAATTGTAAGATGATGATCTTGCAGGTAATTATAGAATCTTGTAAGTAATTGTAAGATTATAATCTTGTAAGTAA s panTro1.chr19 18989669 67 - 82489036 AGTAATTATAGAATCTTGTAAGTAATTGTAAG------------------ATTATA----CTT--------TTATGAGATTATAATCTTGTAAGTAA a score=31870.0 s hg17.chr17_random 1205606 251 + 2618010 CTGTTTCCCGTGAGGCATCCTCAGC---TTTCAATCAAG-----TTGGGGAGTGAAGGTCAGTAAACCAGTG-----------------------------GCTGAGCAAACCTCCACCC-GACCTTTCTCAC----------------AGGGCTGCAGATGAATGGGAGAGCCAGCCGAGAAATCTAAAGTGCCTCGCATCCCCAGCACTTTGCTAAAGGAGGTGGTGGGTGGACAGGTTAAGACACCCTCCCAGCTCCCTAGCCTCCTGCGGTATTCAGGGAGCCATTAGGCACCTTCTTCTG s panTro1.chr13 121279617 252 + 134309081 CTGTTACCCATGAGGCATCCTCAGC---TTTCAATCAAG-----TTGGGGAGTGAAGGTCAGTAAACCAGTG-----------------------------GCTGAGCAAACCTCCACCCCAACCTTTCTCAC----------------AGGGCTGCAGATGAATGGGAGAGCCAGCCGAGAAATCTAAAGTGCCTCGCATCCCCAGCAGTTTGCTAAAGGAGGTGGCGGCTGGACAGGTTAAGACACCCTCCCAGCCCCCCAGCCTCCTGCAGTACTCAGGGAACCATTAGGCACCTTATTCTG s canFam1.chr25 45292937 284 + 54436876 CTGGGTCCCCTGAAGAGCCCTTGGCCATTTCCGTACAAGCTGGTTTGGGGGGTGAAGGTCAAAATCCCAGTGGATTCCCCAGGTAGATTGAATTTCCAGGAGCTGAGCAGACCTTTGCCCTCCTCCTCCTCCCCACCTGGTGAGGAATAAGAGAGGCAGAGGAATAGGAGAGCCTGCTGAAAGGTCTCACGTGCCTCTCA-CCCCAGAAGGTGGCCAGAGAAGGTGCTATGGGGCAGGCCTCGGATTGCCTCCCAGCCACCT--------------------TTGTCATCAGGCACTTCCTTCTG a score=27257.0 s hg17.chr17_random 1205857 183 + 2618010 ----CAGCCACCAGTGGGGCAGTGTTGCCAAGAGGGTACCAGGAGGAGAATCCTGCAGCCTTGACCTGTGC--------------AACTGATAACGAACTACA-GATGGGATGGAGGGCATGTTACCTGATGCTGGCCAGTATATCATGACATGGAGAACTCACCACTATT--CCTGAGAAACTTGGACTTTGACTCAACAGAG s panTro1.chr19 66895997 183 + 82489036 ----CAGCCACCAGTGGGGCAGTGTTGCCAAGAGGGTACCAGGAGGAGAATCCTGCAGCCTTGACCTGTGC--------------AACTGATAATGAACTACA-GATGGGATGGAGGGCATCTTACCTGATGCTGGCCAGTAGATCATGACATGGAGAACTCACCACTATT--CCTGAGAAACTTGGACTTTGACTCAACAGAG s canFam1.chr25 45293221 190 + 54436876 CAGGCCACCCCTGGGGGGGAAATGTTGCCACAAGGGGACCAGGAGGAGACTGCTATGGCCTTCACCTGTTCCCTGTGCCATGATAACCCGAGAACCAATGGGATGATGGGACGGAGGGCATCTCACTTATTGCTGGCT--------------CAGAGGCCTCTCCACCTCCAACCCCGGGAACTTGGACTCAGCCTCAGTAGAG a score=2768.0 s hg17.chr17_random 1206040 6 + 2618010 AGGTAA s panTro1.chr19 66896180 6 + 82489036 AGGTAA s mm5.chr1 85408663 6 + 195203927 AGATCA s rn3.chr9 84310740 6 + 113649943 AGATCA s canFam1.chr25 45293411 6 + 54436876 AGGAAA a score=72316.0 s hg17.chr17_random 1206046 98 + 2618010 TCTTTGGATGGTGGAAGATCTCTCTAAGGAGTGAGTATTGATCAACAAAACCTGGAGAAGCAAAAGAAACCCACAAAGACTTCCTAGAGAATTTACAT s panTro1.chr19 66896186 98 + 82489036 TCTTTGGATGGTGGAAGATCTCTCTAAGGAGTGAGTATTGATCAACAAAACCTGGAGAAGCAAAAGAAACCCATGAAGACTTCCTAGAGAATTTACAT s mm5.chr1 85408669 98 + 195203927 TCTTTAGATGGTGGAAGATTTCTCTGAGAAGTGAGTATCGGTCAGCAAAACCTGGAGAAACAAAGGAAAGCCATGAAGACTTCCTAGATAACTCTCAT s rn3.chr9 84310746 98 + 113649943 TCTTTAGATGGTGGAAGATTTCCCTGAGAAGTGAGTATCGGTCAGCAAAACCTGGAGAGACAAAGGAAACTCACGAAGACTTCCTAGATAACTCTCAT s canFam1.chr25 45313038 98 + 54436876 TTTTTAGATGGTGGAAGATCTCTCTGAGGAGTGAGTATCGATCAGCAAAGCCCGGAGAAACAAAAGATTCTCATGGAGCATTCCTAGAGAACTCCCAT a score=91.0 s hg17.chr17_random 1206143 1 + 2618010 T s danRer1.chr2 3151458 1 + 32943701 T a score=715.0 s hg17.chr17_random 1206144 5 + 2618010 -CTTCA s panTro1.chr19 66896284 5 + 82489036 -CTTCA s mm5.chr1 85408767 5 + 195203927 -CTCCA s rn3.chr9 84340786 5 + 113649943 -CTTGC s canFam1.chr25 45313136 5 + 54436876 -CTTCA s danRer1.chr2 3151459 5 + 32943701 CATTC- a score=141662.0 s hg17.chr17_random 1206149 176 + 2618010 AGGTCAAACTGCCTTAATATTTGGTGCAAGAATATTAGACTATGTTATCAATTTGTGCAAAGGTAAATTTGACTTCCTTGAACGGCTCTCAGACGATTTGCTCCTGAATATCATTTCTTATCTGGATCTTGAAGATATTGCTAGGCTTTGTCAAACATCACACAGATTTGCAAAGG s panTro1.chr19 66896289 176 + 82489036 AGGTCAAACTGCCTTAATATTTGGTGCAAGAATATTAGACTATGTAATCAATTTGTGCAAAGGTAAATTTGACTTCCTTGAACGGCTCTCAGACGATTTGCTCCTGAATATCATTTCTTATCTGGATCTTGAAGATATTGCTAGGCTTTGTCAAACATCACACAGATTTGCAAAGG s mm5.chr1 85424252 176 + 195203927 AGTTCAAGTCGCCGTAGTATTTGGTACAAAAATATTAGACTATGTCTTCAACCTGTGCGAAGGTAAATTTGACTACCTGGAGCGGCTCTCCGACAGACTGCTGCTGAAGATCATCTGCTACCTGGACCTGGAAGATATTGCCAGCCTCTCCCAGACATCAAGCAAGTTTGAGAAGG s rn3.chr9 84340791 176 + 113649943 AGTTCAAGTCGCCGTAGTATTTGGTGCAAAGATATTAGACTATGTCTTCAACCTGTGTGAAGGTAAATTTGACTACCTGGAGCGGCTCTCTGACAAACTGCTGCTGAAGATCATGAACTACCTGGACTTGGAAGACATCGCCAGGCTCTCTCAGACATCAAGCCGGTTTGAGAAGG s canFam1.chr25 45335340 176 + 54436876 AGTTCAAATTGCCTTAATATTTGGTGCAAGAATATTAGACTATGTCTTCAATTTATGTGAAGGTAAATTTGACTTCCTTGAACGGCTCTCAGACAATTTGCTCCTGAGTATCATTTCTTATCTGGATCTTGAAGATATTGCCAGGCTTTCTCAAACATCACGCAGATTTGCAAAGG s danRer1.chr2 3151464 176 + 32943701 AGATCAAGTGGCCATGGTATTTGGTTCTCACATCTTGCAGTACTCCAAAAATTTATGTCAGGGATACTATGATTTCATTGCCCGTCTCCCCAATGTTTTACTTTTTAAAATCATGGGATACCTTGACCTTGAAAACATTTCAGTTCTTTCACGCACCTGCCGTAAATTTAGAGAGG a score=1851.0 s hg17.chr17_random 1206325 8 + 2618010 AGGAAGTC s panTro1.chr19 66896465 8 + 82489036 AGGAAGTC s mm5.chr1 85424428 8 + 195203927 TAACAGTC s rn3.chr9 84340967 8 + 113649943 TAACAGTC a score=19688.0 s hg17.chr17_random 1206333 208 + 2618010 AGGACACAGAGGGCCACAGCACAACAGGGCTGGCCAGGGCTGGTGctgtttgggataggaggacaacagccttcagcagcatccatgttgccgcaaggacatggtttcattctttttttatggtgtgcaatGGCAAAAGTTAACAGAAGAATAGAATATCTTCTACATTCAAGACCAAGAAGTGCTCACACCTTGCAGGAATTGGAGA s panTro1.chr19 66896473 208 + 82489036 AGGACACAGAGGGCCACAGCACAACAGGGCTGGCCAGGGCTGGTGctgtttgggataggaggacaacagccttcagcagcatccatgttgctgcaaggacatggtttcattctttttttatggtgtgcaatGGCAAAAGTTAACAGAAGAATAGAATATCTTCTACATTCAAGACCAAGAAGTGCTCACACCTTGCAGGAATTGGAGA a score=136794.0 s hg17.chr17_random 1206541 160 + 2618010 AGCTGTGCATGTCTGATAAACTGTGGGAACAGATAGTCCAGTCGATCTGCGACACCATCACTCCTGACGTGAGGTCCCTGGCGGAGGACACGGGCTGGAGACAGCTGTTCTTCACCAACAAGCTCCAGCTCCAGCGGCAGCTCCGCAAGAGGAAACAAAA s panTro1.chr19 66896681 160 + 82489036 AGCTGTGCATGTCTGATAAACTGTGGGAACAGATAGTCCAGTCGATCTGCGACACCATCACTCCTGACGTGAGGTCCCTGGCGGAGGACACGGGCTGGAGATAGCTGTTCTTCACCAACAAGCTCCAGCTCCAGCGGCAGCTCCGCAAGAGGAAACAAAA s mm5.chr1 85427855 160 + 195203927 AGTTGTGCAAGAGTGACTTGCTGTGGGAACAGATAGTCCAGTCCACCTGTGACACCATCACCCCTGACATGCGGGCCTTGGCGAAAAACATGGGCTGGAGGCAGATGTTCCTCACCAACAACATCCAGCTCCAGAGGCAGACCCGCAAGAAGAAGCAAAG s rn3.chr9 84347850 160 + 113649943 AGCTGTGCAAGAGTGACTCGCTGTGGGAGCAGATAGTCCAGTCCACCTATGACACCATCACCCCTGACATGCGGGCCCTGGCGAATGACGTGGGCTGGAGACAGATGTTCTTCACCAACAAGATCCAGCTCCAGAGGCAGATCCGCAAGAAGAAGCAAAG s canFam1.chr25 45351351 160 + 54436876 AGCTGTGCACGTGTGACAAACTGTGGGAGAAGATCGTGCTGTCGGCCTGCGACACCGTCACCCCGGACATGAGGGCCCTGGCCGAGGACATGGGCTGGAGGCAGATGTTCTTCACCAACAAGCTGCAGCTGCAGCGGCGGCTCCGCAAGAGGAGGCAGGG s danRer1.chr2 3152069 160 + 32943701 AGCTTTGTAACTCTGAGGAGTTCTGGGAGCAGACAGTGAGGAAGCATTGTGACACAGTGACTCCAACAGTGGAGGCTTTAGCTAAGGAGGTTGGCTGGAAGACAATTTTCTTCACCAACAAGCTGCAGCTGCAGCTGCAGATTAGCCGCCGGAAGCAGAA a score=62227.0 s hg17.chr17_random 1206701 316 + 2618010 ATATGGAAGCTTGAGAGAAAAGCAACCTTAGGCAC--ACATTTTCCTACCAGCAGGGAGCTGAGG-CATGGCTGTG-TTTCTCTTCGGTGTCCAAATCTCTTCCGTCTCCTTTTCTTAAGAACTAAGAGGTTTTGCTGGTGCATGGAGCCATTTG-TAACTCATAGAGGATTTGCACACAAATGCAGCAGAATCTGGCTTCCCAGTGCCTTGCTAGAGTCACC----------ATCATTCT------------GAGGTCAAA-TCATGGCCTGAGGAC-AAGGGCTGTAAGACAGGGAGCCCCATAGGCCATCATCGTCCTTATC--------CCA---CACTCATTAAAAAAGAG s panTro1.chr19 66896841 316 + 82489036 ATATGGAAGCTTGAGAGAAAAGCAACCTTAGGCAC--ACATTTTCCTACCAGCAGGGAGCTGAGG-CATGGCTGTG-TTTCTCTTCAGTGTCCAAATCTCTTCTGTCCCCTTTTCTTAAGAACTAAGAGGTTTTGCTGATGCATGGAGCCATTTG-TAACTCATAGAGGATTTGCACACAAATGCAGCAGAATCTGGCTTCCCAGTGCCTTGCTAGAGTCACC----------ATCATTCT------------GAGGTCAAA-TCATGGCCTGAGGAC-AAGGGCTGTAAGACAGGGAGCCCCATAGGCCATCATCGTCCTTATC--------CCA---CACTCATTAAAAAAGAG s mm5.chr1 85428015 293 + 195203927 ACAGGAAAACCAGGCAGAGAAGCTTGCTTAGGGGATGGCTGTTTCCAAC--------AGCGGAGC-CACAGTGGTC-CGAATCTCCAG-GTCCAAAGC-------TCACTCTCTCTTAACAAC----AGGTTCTGCCGATTC-CAGCATCACTTG-AAAACC----AGATTTTGCACACACATGCA----AATCCA----CCTAGTGCCTTGCTCAAGCAACC-----------CCCTCCT------------ATTGCCCAA-CCAGGGCCCAAGTACTAAGGGCTTCGAGCCAGGAAGTCTCTTAGACTACCACCTCCCTGATCCCCTTTTGCCC---CACCCCCCAGGAAAGAG s rn3.chr9 84348010 296 + 113649943 ACAGGGAAGCGAGACTACGAAGCCTACTTAGGGGACGGCTGTTCCC-AC--------AACTGAGGCCACAGTGGTG-CATCTCTTCAG-GTCC-AATC-------TCACTCTCTCTTAACAAC----AGGTTTTGCTGATTCCAGGCATCACTTGAAAAATC----AGATTTTTCACACACATGCA----AATCCA----CCTAGTGCCTTGCTTGAGCAATCTCCCC----TGTCCTGCT------------CAGGCCAAC-CCACGGCCCATGTACTAAGGGCTTCGAGACAGGAAGCCTCTCAGACCACCTCCTTCCTGATC--------CCCTGTTGCCCATGAGGAAAGAG s canFam1.chr25 45351511 277 + 54436876 CCAAGGAAGCCACAGGAACAGCCAGCTGTAGGGAC--GCGTGTTCCTGCCCGCAGGGGGCTTGGCGCCAGGCTGTGTTTTTTCTTCTGTGTCCAACTC-------TCCTCCCC-----------------------------------CCATCGG-AAAAGCCTACAGGGTTTGCACACAGGTGCAGCAAAACCC-----CACTGGGCCTTGCCTGAACCCCGGCCCCCCCATCCCATCCCACCCCCGGAGTGGGGGTCAGATCCCTGGCCCCAGCA--GAGGGCTGGGCGGCAGGAAGCC---TGGGACAC---------------------CCA---CCCGCCTGCGGAAAGGG a score=0.0 s hg17.chr17_random 1207017 27 + 2618010 TGTTTTTAAATGATTGTTTTAATGTTT a score=377.0 s hg17.chr17_random 1207017 13 + 2618010 -TGTTTTTAAATGA s mm5.chr1 85428308 14 + 195203927 GCACTTGTATATGA a score=0.0 s hg17.chr17_random 1207017 27 + 2618010 TGTTTTTAAATGATTGTTTTAATGTTT a score=0.0 s hg17.chr17_random 1207030 14 + 2618010 TTGTTTTAATGTTT a score=7841.0 s hg17.chr17_random 1207044 31 + 2618010 GTTTTAATTGTATATAAACAAACAATAAATG s panTro1.chr19 66897157 31 + 82489036 GCTTCTATTGTATATAAACAAACAATAAATG s rn3.chr9 84348306 31 + 113649943 GCACCTGCTGTGTATGAACTAACAATAAAGA s canFam1.chr25 45351788 31 + 54436876 GCTTCTGCTGGACAGAGGGCGACAATAAATG a score=5031.0 s hg17.chr17_random 1207075 13 + 2618010 ATTATTAGCAGGT s panTro1.chr19 66897188 13 + 82489036 ATTATTAGCGGGT s mm5.chr1 85428547 13 + 195203927 ATGCATAGCTGGG s rn3.chr9 84348337 13 + 113649943 GTTATTGGCAGGC s canFam1.chr25 45351819 13 + 54436876 ATCATTAGCAGCT a score=18339.0 s hg17.chr17_random 1207088 40 + 2618010 TTTTATTAGACATCTATTTTATCTAGGCATTGGAAAGGGT s panTro1.chr19 66897201 40 + 82489036 TTTTATTAGACATCTATTTTATCTAGGCATTGGAAAGGGT s mm5.chr1 85428560 39 + 195203927 TTTTGTTAAATATCTATTCTATCTAGGCGTT-AAAATGGC s rn3.chr9 84348560 40 + 113649943 TTTTGTTAAATATCTATTCTGTCTAGGCATTCAAAGTGGC s canFam1.chr25 45351832 37 + 54436876 TTTCACTACCTG---GTTTTCTCGAGGCACTGGAAAGGAT a score=30564.0 s hg17.chr17_random 1207128 114 + 2618010 AATGGGGCTTTTACTTTTTTTCCTGGCGTTGTGTCATCTGAGTCCAGCCATGAAGCTGGTGCCTGAGTGTCCCCACCAGGAACCGTGAAGGGCAGGTACCACAGGAGGCACAAG s panTro1.chr19 66897241 114 + 82489036 AATGGGGCTTTTAATTTTTTTCCTGGCGTTGTGTCATCTGAGTCCAGCCATGAAGCTGGTGACTGAGTGTCCCCACCAGGAACCGTGAAGGGCAGGTACCACAGGAGGCACAAG s mm5.chr1 85428599 114 + 195203927 AACTCAACTTTTGAATTTTTTCCGCCTAGAGTATTACCTGCATCCCTCTGTGGAGTAGATGGCTGGGAATCTCCACCCAACATTTGGAGGTACAGGTGCCACAGGAGGCACCCC s rn3.chr9 84348600 114 + 113649943 AACTTGGCTTTTGAAGTTTTCCCCCCTGGTGTGTTACCTGCATCCTTCTGTGGAGTGGGGGGCTGGGACTCTCCACCCGACATTTGGAGGTACAGGTGCTACAGGAGGCCTCCC a score=39758.0 s hg17.chr17_random 1207242 166 + 2618010 GGGTGAGTGCAGTTGCCTTCCCAACTTTGTTCTGCTAAGTCCATATTCAGGGCCCTGTCCTTGTGGGCCCAGGACGCCAGGCTCCATCCCCGCATGTGGACAGCTTCCGACCTGGCGCTGGGGCATGACTGGA--GAAGTGCAGGAATACTGCTTGCGGACCTTGCTC s panTro1.chr19 66897355 166 + 82489036 GGGTGAGTGCAGTTGCCTTCCCAACTTTGTTCTGCTAAGTCCATATTCAGGGCCCTGTCCTTGTGGGCCCAGGACGCCAGGCTCCATCCCCGCATGTGGACAGCTTCCGACCTGGCGCTGGGGCATGACTGGA--GAAGTGCAGGAATACTGCTTGCGGACCTTGCTC s mm5.chr1 85428713 147 + 195203927 AGGGCAGCACAGCTTCACCCTC-ACTTCATCTAG---------TATTCA-GTCACTGTCCTTGTGGGCCCATGGTGTCATGTACCACAC--------AAATACCCCCTGACCCAGCACGAGAGCACGGTTGGG--GAAGCCAAGTCAGTGTTCAGGCAACCCTTACTT s rn3.chr9 84348714 154 + 113649943 AGGAGAGCACGGCTACCCCCTC-ACTTCATCCAGC--AGTTTGTATTCA-GTCACTGTCCTGGTGGGCCCAGGGTGTCATGTGTCACAC--------AAACACCCCCTGACTTGTTACTGGAGTGTGGCTAAG--AGAGCCCAGACAGTCTGTGGACAACCCTTACTC s canFam1.chr25 45351933 146 + 54436876 GGGTGGGCCCAGCCGCCTTCCCAGCTCTCTTC-----------CCTGCA--TCCCTGTCCC-GTGGGCTC-CGGTGCCAGCTGCCATCC----CTGTGGACAACCTCTGATCCGGCCACGCGGCGAGACTGGAGCGAAGTCCA--CCTCCTGCTCGCACAGCCT-CTC a score=0.0 s hg17.chr17_random 1207408 11 + 2618010 AAAGTACAACT a score=109.0 s hg17.chr17_random 1207408 4 + 2618010 AAA-----G s panTro1.chr19 66897521 4 + 82489036 AAA-----G s mm5.chr1 85428860 9 + 195203927 AGAGGAGGG s rn3.chr9 84348868 4 + 113649943 AGA-----G a score=1555.0 s hg17.chr17_random 1207412 7 + 2618010 TACAACT s panTro1.chr19 66897525 7 + 82489036 TACAACT s mm5.chr1 85428869 7 + 195203927 TACCACT a score=1884.0 s hg17.chr17_random 1207419 5 + 2618010 TCCCA s panTro1.chr19 66897532 5 + 82489036 TCCCA s mm5.chr1 85428876 5 + 195203927 GCTCA s canFam1.chr25 45352079 5 + 54436876 TCCCA a score=5218.0 s hg17.chr17_random 1207424 34 + 2618010 GGACTACTTCACATTGTtaaataaacctataaac s panTro1.chr19 66897537 34 + 82489036 GGACTACTTCACATTGTTAAATAAACCTATAAAC s canFam1.chr25 45352084 31 + 54436876 GG---GCCCCGCCTTGTCGGATAAATCTATCAAC a score=1046.0 s hg17.chr17_random 1207458 37 + 2618010 a--ttttaaaaaataaataaataaataataataaaaaat s panTro1.chr19 66897571 32 + 82489036 attttttaaaaaat-aataa------aaaaataaaaaat a score=52904.0 s hg17.chr17_random 1207495 279 + 2618010 aaagaaTGGTCCTGTTTTCATGTCCAGTGGTATTTTCCTTTCCTCAAAGATTTT-------ACACCTGAATGTATATAATTCATTTTACGTAAGATTCCCATCCCTTAATTTTCCGTCTTATCTTTCCCAAGTTCTGGCTATTAATTTGGTAATTCCCTACATGTTGTCATTATAATGTACATATATCCCCCTTTGG-AGACATAAACATAAACCCAAGGGAAGAG-AAACATAGAGACTTTTATTTTTTTTTTTTAAGG-TTTCTAACCCAATCATCTCTGAAATCTG s panTro1.chr19 66897603 278 + 82489036 aaaGAATGGTCCTGTTTTCATGTCCAATGGTATTTTCCTTTCCTCAAAGATTTT-------ACACCTGAATGTATATAATTCATTTTATGTAAGATTCCCATCCCTTAATTTTCCATCTTATCTTTCCCAAGTTCCGGCTATTAATTTGGTAATTCCCTACATGTTGTCATTATAATGTACATATATCCCCCCTTAGTAGACATTAACATAAACCTCAGGGGAGAGAAAACAT-GAGACTTATA-TGTTTTTTTTTAAGGTTTTCTA--CCGATCATCTCTGAAATCTG s mm5.chr11 15054298 236 - 121648857 AGAGAATGGCCATTTCTTTCTGTTCAATGCTGTTTTCTTTTCCTGAAAGTTTTT-------ACATCTAAACACATATAATTAATAT-----------------CCCTACTTTTCATCTTTTTCCTTACCAATTTCTAGGTATCAG-ATGATAGTCCACTGCATAGTTTCTATATAATGTGTAC--------------------TAACGAAATAGCCAAGGGGGAAT-GTGCATAAAAACTC----CTTTTTACTTGAAGG-TTTCTGGCTCAGAGAGCTCTG--TTTTG s rn3.chr10 14446580 253 - 110733352 AGAGAGAGGCCATTTCTTCCTGTTCAATGCTATTTTCCTTTTCTGAAAGTGTTTTTCTCCCACACTTAAGTGCATATAATTGGTCT-------GAGTCTTAATCCCTACTTTTCATCTTTGTCCTCACCAATTTCTAGCCATTGG-CTGAGAGTCCCCTGCATACTTTATATATAATGTGTAC--------------------TTATGAAATAGCCAGGGGGGCGT-GTGCATAAAAACTC----CTTTTCACTTGAAGT-TATCTGGCTCTAACAGCTCTG--ATTTG a score=14120.0 s hg17.chr17_random 1207774 57 + 2618010 AGCCTGGACTAGTTGTGGCCACTCACTTAAGAGAGGCCTTCAAAATGACT-TTCCTAT s panTro1.chr19 38145611 58 - 82489036 AGCCTGGACTAGTTGAGGCCATTCACCTAAGAAAGGCCTGCAAAATTACTCCTCTTAT s mm5.chr11 15054534 56 - 121648857 GGCCTACACTGG-TGAGGCTTTTTTGTCAAGAGATTTATTGGAAGTGGCT-TTCCTAT s rn3.chr10 14446833 57 - 110733352 GGCCTGCACTAGTTGAGGCTTCTTAGTCAAGAGATGGATTGGAAGTGACT-TTCCTAT a score=524.0 s hg17.chr17_random 1207831 3 + 2618010 -TAG s panTro1.chr19 38145669 4 - 82489036 CTAG s mm5.chr11 15054590 3 - 121648857 -TAA a score=9822.0 s hg17.chr17_random 1207834 179 + 2618010 GAGTGTTCTGtttttgtgtgtgtttgt-------------------ttttttgaggtagggtcttactctgttgcccaggctggagtgcaatggcataatcatggctcactgcagcctcgacctcctgggctccagtgatcctcccaccttggtctcccaaagtgtggggattacaggcattagccaccatgctcggc s panTro1.chr19 38145673 186 - 82489036 TAGTATTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttt-----------gtgCcactttgttgcccaggctgcagtgcagtggcacaataatggctcactgcagccttgacctcctgggctcca-tgatcctcccaccttggccatccaaattgctgagattacaggtgttagccaccatgcttagc a score=300.0 s hg17.chr17_random 1208013 1 + 2618010 C s panTro1.chr19 38145859 1 - 82489036 c s mm5.chr11 15054593 1 - 121648857 C a score=4611.0 s hg17.chr17_random 1208014 41 + 2618010 -----CCTATTCTGTTTTGTTTTTTCATTTATTTTACTTCATTTTA- s panTro1.chr19 38145860 41 - 82489036 -----cctattctgttttattttttcttttattttacttcatttta- s mm5.chr11 15054594 37 - 121648857 -----ATTAGTCCTTTTGATTTTATTATTTTTTTGTCTTC----TA- s rn3.chr10 14446890 43 - 110733352 CCACATCGGTTCTTTTGATTTTTATTATTTTTACGTCTTC----CAA a score=425.0 s hg17.chr17_random 1208055 4 + 2618010 AATG s mm5.chr11 15054632 4 - 121648857 AATC s rn3.chr10 14446933 4 - 110733352 AGTC a score=22152.0 s hg17.chr17_random 1208059 110 + 2618010 TTTAGTTACTTTAAAAAAAAGGTTT-CGGTCAATGTCAAATAATATTTAACATGGCAAGGAAAAC---AATAAAATGAACATCCATGTAACT-ACTT--AAAAAAAATCATTACCAG s panTro1.chr19 38146247 108 - 82489036 TTTAGTTACTTAAAAAAAAA--TCTACAGTCAATGTCAAATAATATTTAACATGGCAAGGAAAAC------AAGATGAACATCCATGTACCT-GCTTTAAAAAAAAATCATTACTAG s mm5.chr11 15054636 106 - 121648857 TTTATTTTATTTATTAATTA------AAGTCAATATTA---AAGATTTAATGTGTTAAGGAAAACAACAATAAAACAAACATCCACGTACCCAGCTT--TAAAAAGATTACTACCAG s rn3.chr10 14446937 103 - 110733352 TTTGGTTCATTTATTAATTA------AAGTCCATATTA-------TACAATGTGTCAAGGGAAACCACCATAAAACCAACATCCACGTACCCAGCTTT-AATAAAGATTATTACCGG a score=1210.0 s hg17.chr17_random 1208169 6 + 2618010 TATATT s panTro1.chr19 38146355 6 - 82489036 TATAtt s mm5.chr11 15054742 6 - 121648857 TATAAT a score=60.0 s hg17.chr17_random 1208175 2 + 2618010 GA s mm5.chr11 15054748 2 - 121648857 AA a score=24223.0 s hg17.chr17_random 1208177 306 + 2618010 ttttctttttttgtgtgtgatat----tctcagtctgctgccgagggtggaatgcagtggcgctggaatg-agtggcatgatcacggctcactgcaaccttgacctccacgggctcaggtgatcctcctatctcagccttctgagtagctgggcctgtagttgcatgccaccacttccggctaattttttgtaggtatgggatttt-gccacgttgcccaggctggtttcaaactcctgggctcaagtgattcctctgcctcggcctcccaaagtgctaggattacaggcatgagtcaccatgcccagctCT s panTro1.chr19 38146692 312 - 82489036 ttttttttttttgtttttgagacagagtctcagtctgctgcctaggatggaatgcagtggcgctggaatgcagtggtgtgatcacggctcactgcaaccttgacctccatggactcaggtgatcctcctatctcagcctcctgagtagttgggtctataggtgcatgccaccactcctggctaattttttgtagttacggggtttttgccatgttgctcaggctggtttcaaactcctgggctcaagtgattcctctgccttggcctcccaaagtgctaggattacaggcatgagtcaccatgcccagccCT a score=12461.0 s hg17.chr17_random 1208483 64 + 2618010 TGAATGGTTTTAAAGTGTTATTGTTATCTGAATA-TTTGTTTTAAACAACAGGATTTAACCTTAC s panTro1.chr19 38147004 64 - 82489036 TGAATAGTTTTAAAGTGTTATTCTTATCTGAATA-TTTGTTTTAAACAACAGGATTTAAACTTAC s canFam1.chr9 7173448 62 + 53642819 TGAATGATTTTAAAGTGTTATTCTTATCTGAATCTTTTGTTTTAAAGGA---GATTTAAACCTAT a score=71702.0 s hg17.chr17_random 1208547 180 + 2618010 ----AGGAAAGCCTAAATACAA---ACCTCTGCACGTTAACCCTATATACA-TTTTTCTATGCTGTTACTTACA-TATTTGAATGTACTGCTTTCAACTTCAAAACAAGCAGTCTCCC----------------CCAAGTCTCCCATTAC-GTTCTGAAATCCTAACTTCTATTACCTAATACAAGACTACAAATTATGTTCATTG s panTro1.chr19 38147068 181 - 82489036 ----AGGAAAACCTAAATACAA---ACCTCTGCACGTTAACCCTATATACA-TTTTTCTATGCTGTCACTTACATTATTTGAATGTACTGCTTTCAACTTCAAAACAAGCAGTCTCCC----------------CCAGGTCTCCCATGAC-GTTCTGAAATCCTAACTTCTATTACCTAATACAAGGCTACAAATTATGTTAGTTG s mm5.chr11 15055241 179 - 121648857 ----AGGGAAGTCTAAACGGAA---TTGTCTG-------AACCTATGCCCA-TTTCCCTGAGCCGCC----ACA-TATGTGAAGGTATTGCTTAAAACTC----ACAA-CAGTCTTCCACCCTCCCACCCCCTGCTAGGCTTCCGACCAT-TTTCTGAAATCTTAACTTCCATTTCCCAATACAAAGCTACAAATTATGCTAGTG- s rn3.chr10 14447571 181 - 110733352 ----AGGGAAGTCTAAACAAAG---CTGTCTGAACATTATTCCTATACCCA-TTTCCCTGAGCTGCCTGCCACA-CATTCGTAGGTGTTGCTTAAAATTCTC-------CACCCCCTC-------CATCCCCTGCTAGGTTTCCCACCAT-TTTCTGAAATCTTAACTTCCATTTCTCAGTACAAAGCTACAAATTATGCTGGTG- s canFam1.chr9 7173510 187 + 53642819 ACATAGGCAAGCCTAAACAGAGTCCTCCTCTGCATGTTAAGCAGCTATACATTTTCCCCACACCGTCTCTTACA-TATTTGAAGGTACTGCTTTAAACTTCTCAACAGGTAGTCTCCC-----------------CAGCTCCCCCAACACTGTTCTCAAATCCTAACTTCTATTGCTTAATACAAAGCTACAAATTATGTTAGTG- a score=95162.0 s hg17.chr17_random 1208727 229 + 2618010 GATGGTTGGGAACAAAGTGTGTGCCATAAAAATAAGGTAAATG-TGAATGTGTGAAACAGTTTGCTAAGCTTTTTGCCACCG----TCTGACCTCTTAAATTGTGGTAGCAGCTATTGTT-------CACATTGAT-----------------------------TTGT-----------------------ATATGTT-TGTAGTACAAAGAAgcatttctaaaggaccttgttcattgctttgcacaaaatggccacttaatatttg---ttgaatgaatTGCTGGCACTATCTC s panTro1.chr19 38150745 258 - 82489036 GGTGGTTGGGAACAAAGCGTGTGCCATAAAAATAAGGTAAATG-TGAATGTGTACATCAGTTTGCTAAGTTTTTTGCCACTG----TCTGGCCTCTTAAATTGTGGTAGCAGCTATTGTT-------CACATTGATATATTACATTGATATTGATATTGTTCACATCGT-----------------------ATATATT-TGTAGTACAAGGAAGCATTTCTAAAGGACCTTGTTCATTGCTTTGCACAAAATGGCCACTTAATATTTG---TTGAATGAATTGCTGGCACTATCTC s mm5.chr11 15055420 258 - 121648857 GGTGGTTGGGAACAAAGTGTGGGCCATAAGAACCAGGGAAAGGAAGAGTGCATACATCAGCCTGCTCAGTTTATTGTCTCAG----CCTAGCGTTTGAAACAGTGAT-GTAGCAATTGTTCTATCGCCACAGTAAC------------------TTTTGTGGGAATTATTTCCTGAGCCT----------TCAGATCTTACATTGCACAAAGAAGTGTTT---AAGGGCCCTGTTCATTGCTTTGTGAATAATAAGCACTTAGTATTTC---TTGATTGAATTTTTAGAGCTGTCCC s rn3.chr10 14447752 260 - 110733352 GGTGGTTGGGAACAAAGTGTGGGCCATAACCACCAGGGAAATA-TGAATGCATACATCAGCTTGCTCCGTTTATTGTCACAA----GCCTGCGTTTGAAATAGTGAT-GTAGCAATTGTTCTATCGCCACAGTAAC------------------TTTTGTGGGAA---T-------GGTTTCCTGAGCCTTCAGATCTTACACAGCACAAAGAAGTGTTTCTTAAGGGCCCTGTTCATTGCTTTGTGAATAATGAGCACTTACAATTTC---TTGATTGAATTTCTAGAGCTGTCCC s canFam1.chr9 7173697 245 + 53642819 CGTGGTTGGGGACAAAGTGTGTGCCATAAGAGTAAGGCAAATG-TGTACGTATCTGTCAATTTGCTAATTTTCTTGCCATTGTCCCTCCAGTCTTTTAAATTGTGTTAGCAGCCGTTGTT-------CAAATTGGT-------------------------CAGGTTAC-------------------CTTCAGAGCTCCTGTAGTACAAAGAATCATTTCTAAGGGAACTTATTCACTGCTTTGCACATAGTAGGCAATCAGTATTTGAATTTGAATGCATTTCTAGCACCGTCCT a score=1877.0 s hg17.chr17_random 1208956 6 + 2618010 TGGTAt s panTro1.chr19 38151003 6 - 82489036 TGGTAT s mm5.chr11 15055678 6 - 121648857 TTGTAT s canFam1.chr9 7173942 6 + 53642819 TTGAAT a score=24875.0 s hg17.chr17_random 1208962 302 + 2618010 ttttatttttatttatttatttatttttgatatggagtcttgctctgtcacccaggctgaagtgcaggggtgtgatctcggttcactgtaacctcctgtgttcaagcgattctcgtgcctcagcctccctaattgctgggactaccggcataagccatcacgcctggctaatttttttgtattttttttttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaaatgatccgcccgcctcggcctcccaaagtgttgggtttacaggcgtaagccag s panTro1.chr19 38151009 299 - 82489036 TTTAAtttttatttatttatttatttttgatatggagtctcgctctgtcacccaggctgaagtgcagtggcgtgatctcggctcactgcaacctctcgtgttcaagcgattctcttgcctcagcctccctaattgctgggaccacaggcatgcgccaccacgcccggctaatttttttgta---tttttttttagtacagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaaatgatccgcccacctcggcctcccaaagtgttggaattacaggcgtgagccac a score=1646.0 s hg17.chr17_random 1209264 17 + 2618010 cgtgcccagccTATCTG s panTro1.chr19 66899492 17 + 82489036 CGTGCCCAGCCTATCTG a score=1537.0 s hg17.chr17_random 1209281 7 + 2618010 TGGTATT s panTro1.chr19 66899509 7 + 82489036 TGGTATT s rn3.chr10 14448012 7 - 110733352 TTGTATT a score=89148.0 s hg17.chr17_random 1209288 215 + 2618010 TTTAGTGTGATGTCTAGAACTTCATATACTTTTTTGGATTACTTTAAT-TGTAGGGCTGTATCCAAACTGATCAAATGCTCTCGGAGGTAACT--ATTTGGA----GAAGTGACTTCACTGATTGATTAAAATAAATGACTGGCATGGAATAAGGATTAAAATATATTAATCT----GAAACATTTAAAATTGCATTAATGTTATAACAGC-CTAAAGCAAAACTAA s panTro1.chr19 66899516 214 + 82489036 TTTAGTGTGATGTCTAGAACTTCATATACTTTTT-GGATTACTTTAAT-TGTAGGGCTGTATCCAAACTGATCAAATGCTCTCGGAGGTAACT--ATTTGGA----GAAGTGACTTCACTGATTCATTAAAATAAATGACTGGCATGGAATAAGGATTAAAATATATTAATCC----AAAACATTTAAAATTGCATTAATGTTATAACAGC-CTAAAGCAAAACAAA s mm5.chr11 15055685 218 - 121648857 TTAAGTCTTACTGCTAGAACT---TATGATTTTG-GGATCACTTTAATCCGTAGGAGTGTTTTTAGACCGATGAAACGCTCTTGGATTTCAC-----CTGGAGAATGAAGTGTCTTAACTGGTAGATTTTAAGTCACCATTTGCAATGTTTTAGGATTAAAATGTATTAGGCTTCAATGAACAGTTTAAACGGCATTAATGTTATAACAGCTTTAAAGCAAAGCTAA s rn3.chr10 14448019 216 - 110733352 TTAAGTCTTACCGCTAGAACT---TATGATTTGG-GGATCACTTTAATCCGTAGGAGTGTACTTAGACTGATGAAATGCTTTTGGGTTTCAT-----CTGGAGAATGAAGTGTCTTAACCGATAGATTGTAAGCAACCATTTACATTGTTTT-GGATTAAAATGTATTAGACTTCAACGAACAGTCTAAACGGCATTAATGTTATAACAGC-CTTAAGCAAAGTCAA s canFam1.chr9 7173949 218 + 53642819 TCTAGCCTAACTCGTAGAACTTTATGAAATTTT--GGAGTACTTTAAT-TGTAGGGTGGGAGGCAGGCTGATGAGATGCTCTTGGAGGTAACTTCGTCTGGAGAATGAAGAGACATTACTGATAAATTAAAAGTAATGGCTGACACTGAATTAGCATTAAAACGTATTAGATTTTATTAAACATTTAAAATGGCATTA-----ATAACAGC-CTTCAGCAAAACTAA a score=1977.0 s hg17.chr17_random 1209503 15 + 2618010 TGAATCACATAAAAA s panTro1.chr19 66899730 15 + 82489036 TGAATCACATAAAAA s rn3.chr10 14448237 10 - 110733352 TGGAT---ACAAA-- s canFam1.chr9 7174167 15 + 53642819 CAAAGCACATAAAAA a score=926.0 s hg17.chr17_random 1209518 7 + 2618010 -ATCCCCC s panTro1.chr19 66899745 7 + 82489036 -ATCCCCC s canFam1.chr9 7174182 7 + 53642819 AATCCCC- a score=27209.0 s hg17.chr17_random 1209525 298 + 2618010 ACGTggccgggcacggtggctcacgcctgtaatcccagcactttgggaggccaagccgggcggatcatgaggtcaggagattgggaccatcctggctaacacgatgaaaccctgtctctactaaaaatacaaaaaattagccaggcgtggtgccgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacccggcaggtggagcttgtagtgagccgagatggcgccactgcactccagcctgggcgacggaacgagactccgtctcaaaaaaaaaTCCC s panTro1.chr19 66899752 297 + 82489036 ACGTggccgggcacggtggctcacgcctgtaattccagcactttgggaggcccagccgggcggatcatgaggtcaggagattgagaccatcctggctaacacgatgaaaccctgtctctactaaaaatacaaaaaattagccaggcgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggtgtgaacccggcaggtggagcttgtagcgagccgagatggcgccactgcactccagcctgggcgacggaacgagactccgtctc-aaaaaaaaTTCC a score=-31.0 s hg17.chr17_random 1209822 1 + 2618010 C s rn3.chr10 14448247 1 - 110733352 T a score=2413.0 s hg17.chr17_random 1209823 5 + 2618010 CCACG s panTro1.chr19 66900049 5 + 82489036 CCACG s mm5.chr11 15056077 5 - 121648857 CCACA s rn3.chr10 14448248 5 - 110733352 CCACA a score=10969.0 s hg17.chr17_random 1209828 50 + 2618010 ---CTGTTGTCCTTACTAGTTTACTTTGTGCTAGACACTTTTGCATGTAtatg s panTro1.chr19 66900054 50 + 82489036 ---CTGTTGTCCTTACTAGTTTACTTTGTGCTAGACACTTTCGCATGTATATG s mm5.chr11 15056082 37 - 121648857 ---CTCTTATCCT---TAGTTTGCATTAT------TACTCTTGCGTGCA---- s rn3.chr10 14448253 34 - 110733352 ---CT-TTATCCT---TAGTTTTCATTAC------TACTTATG--TGCA---- s canFam1.chr9 7174189 50 + 53642819 CCATTGTTATTCT---TAGTTTTCATTGTCCTAGATCTTTTTGCATGCATACG a score=68034.0 s hg17.chr17_random 1209878 185 + 2618010 catacaac-ttttattctgtttttaaactttgcattacatatacattcttccatattatatgatcttcattaaaat----agttaaatggctgcataaaaa-accatgtggttcctgg----------accattatgctgttccctca-ttccccttttgttTTTAATGGAATAGAGCAAAG------AACATCTTCTGTATTA-----TTGT s panTro1.chr19 66900104 185 + 82489036 CATACAAC-TTTTATTCTGTTTTTAAACTTTGCATTACATATACATTCTTCCATATTATATGATCTTCATTAAAAT----AGTTAAATGGCTGCATAAAAA-ACCATGCGGTTCCTGG----------ACCATTATGCTGTTCCCTCA-TTCCCCTTTTGTTTTTAATGGAATAGAGCAAAG------AACATCTTCTGTATTA-----TTGT s mm5.chr11 15056119 194 - 121648857 CATAAAAC-TTGTATTCTCCATTTAAACCCTGCATTACATATAAAGTCTGACATGTTACATGG---CTACCACAATTGCCATTTAGATGGCTGCATAAAAATGTGTTGCAGTTGATGTAATACAATTCACTATTAGGCTGCACTCTCA-CCCCAACCTTG------------CAAAACAAAATCCC--AAAACAACCTGCATTATTTATTTGT s rn3.chr10 14448287 193 - 110733352 CATAGAAC-TTGTATTCTCCATTTAAACCCTGCATTACATATAAAATCTTCCATGTAACGTGG---TCACCACAATTGCCATTTAGATAGCTGCATAAAAATGTCTTGCTGCTGATGTAATACAATTCATTATTGGGCTATACTCTCA-TCCCAGCCTTG------------TAAAACAAAACCCCCAAACA---CCTGTATTATTTATTTGT s canFam1.chr9 7174429 194 + 53642819 CATACGACTTTTTGATGTGCTTTTAAACT-----TTATTTGTAAACTCTTCCATATTATATGA---TCTTCATAATTGCCATTTAAATGGCTGCATAAAAA-TCGATGCGGATGATGTAATACAGTTCACCATTAGGCTGTTCCCTCATTCCCCCTTTTGTTATTAACCGAACTTTTCAAAGA-----AACATCTTCTGTCTTA-----ATAT a score=3732.0 s hg17.chr17_random 1210063 9 + 2618010 CAAGAATAg s panTro1.chr19 66900289 9 + 82489036 CAAGAATAg s mm5.chr11 15056313 9 - 121648857 CCAGAATAA s rn3.chr10 14448480 9 - 110733352 CCAGAATAA a score=104801.0 s hg17.chr17_random 1210072 1169 + 2618010 tgagaggtgacagcgtgctggcagtcctcacagccctcgcttgctctcggcgcctcctctccctgggctcccactttggcggcacttgaggagcccttcagcccaccactgcactgtgggagcccctttctgggctggccaaggccggagcccactccctcagcttgcagggaggtgtggagggagaggcgtgagctggaactggggctgcgtgcagcgcttgcgggccagctggagttccgggtgggccagggcttggc-ggccccgcactcggagcagccggccggccctgccggccccgggcaatgagggacttagcacccgggccagcggctgcggaaggtgtactaggtcccccagcagtgccagcccaccggcgctgcgctcaatttctcgccgagccgtagctgccttcccgccgggcagccctcgggactgcagcccgccatgcctgagccttcccccgcctctgtgggttcctgtgcagcccgagcctccccgacaagccctgccccctgctcacggcgcccaggcccatcgaccacccaagggctgaggagtgcgagcacatggcacaggactggcaggcagctccacctgcagccccggtgggggatccactggatgaagccagctgggcttctgagtctggtggggtcttggagaacctttatgtctagctcagggtttgtgagtgcaccagtggacactc--tatctagctactctggtggggccttggagaacctttatgtctagctcagggattgtaaatacaccaatcagcactctgtatctagctcaaggtttgtaaacacaccaatcagcaccctgtgtttagctcaggatttgtgaatgcaccaatcaacactctgtatctagctcaggatttgtgaatgcaccaatcgacactctgtatctagctgctctggtggggccttggggaacctttgtgtccatactctgtatctaactaatctgatggtgacgtggagaacctttgtatctagctcagggattgtaaacacaccaatcagcgccctgtccaaacagaccacttggctctaccaatcagcaggatgagggtggggccagataagagaataaaagcaggctgccagagcctgcagtggtaactcgttcgcgtctctttacacagtgtg-aagtttcag s panTro1.chr19 66900298 1164 + 82489036 tgagaggtgacagcgtgctggcagtcctcacagccctcgctcgctctcggcacctcctctgcctgggctcccactttggcggcacttgaggagcccttcagcccaccgctgcactgtgggagcccctttctgggctggccaaggccggagcccactccctcagcttgcagggaggtgtggagggagaggcgcgagctggaaccggggctgcgtgcagcgcttgtgggccagctggagttccgggtgggccagggcttggcgggccccgcactcggagcagccggccggccctgccggccccgtgcaatgagggacttagcacccgggacagcggctgcggaaggtgtactaggtcccccagcagtgccagcccaccggcgctgcg--------cttgccgagccgtagctgccttcccgccgggcagccctcgggactgcagcccgccatgcctgagccttcccccgcccctgtgggttcctgtgcagcccgagcctccccgacaagtgccgcctcctgctcaaggcgcccagtcccactgaccacccaagggctgaggagtgcgagcacatggcgcaggactggcaggcagctccacctgcagccccggtgggggatccactggatgaagccagctgggcttctgagtctggtggggtcttggagaacctttatgtctacctcagggtttgtgagtgcaccagtggacactctgtatctagctactctggtggggccttggagaacctttatgtctagctcagggattgtaaatacaccaatcagcactctgtatctagctcaaggtttgtaaacacaccaatcagcaccctgtgtttagctcaggatttgtgaatgcaccaatcgacactctgtacctagctcaggatttgtgaatgcaccaatcgacactctgtatctagctgctctggtggggccttggggaacctttgtgtccatactctgtatctaactaatctgatggtgacatggagaacctttgtatctagctcagggattgtaaacacaccaatcagcgccctgtccaaacagaccacttggctctaccaatcagcaggatgagggtggggccagataagagaataaaagcaggctgccagagcctgcagtggtcacccgttcgggtctccttccaca-tgtgaaagcttCAG a score=19698.0 s hg17.chr17_random 1211593 277 + 2618010 gtgcggtggctcaggtctgtaatcccagcacttcgggaggccaaggcaggcagatcatttgaggtcaggagttcgtgaccaacctgggcaacatagagaaacctaaatgtccctcctaaacgtgtctttaccaaaaataaaagaattagtggggtgtagtggtgcatactgtgatctcagctactgcagaggctcaggtgggaggatcatctgagcctgggaagttgggactgcagtgagtc-------------------------tgggtgacag--ggagaccctgtcttaaaaaaaaaaa------------- s panTro1.chr19 38151827 317 - 82489036 gtgcggtggctcaggtctgtaatcccagcactttgggaggccgaggcgggctgatcgcttgaggtcaggagttcgtgaccagcctgggcaacatgggaaaacctaaacgtctctactaaacatgtctctactaaaaatacaaaaattagtggggcgtagtggtgcacactgtggtctcagctactccagaggctcaggtgggaggctcacctgagcccgggaagttgagactgcagtgagccgtgttcgcaccactgcactccagcctgggcgacagagggagaccctgtctaaaaacaaaaaaataaaaaataaaT a score=1705.0 s hg17.chr17_random 1211870 12 + 2618010 TTTTAGCAGTAC s panTro1.chr19 38152144 12 - 82489036 TTCTAGCAGTAC s canFam1.chr9 7174641 12 + 53642819 tcccaagagtgc a score=2476.0 s hg17.chr17_random 1211882 46 + 2618010 AGTTACAAGGTCAAAGGATATGGTACA----TCTTTAGAAAGTTGTTATC----- s panTro1.chr19 38152156 48 - 82489036 AGTTACAATGTCAAAGGATAAGGTACAC--ATTTTTAAAAAACTTTTCTC----- s rn3.chr10 14448504 44 - 110733352 AGTTACCGCATCAGAGT-TACAGTCC-----TGTTCATTTTGTCTTTTTT----- s canFam1.chr9 7174653 55 + 53642819 aattacagggtcaaatggcaaggtacacttatttttatTTCATTTTCTATCTCTT a score=150904.0 s hg17.chr17_random 1211928 432 + 2618010 TTTCTGCTCCTGAGATAA----ATACAGTAGTGTATGAACAACTCTTCATACGTTACTC--CAAGGTTTATCTTGTTAATTCTTTAAGAC-------GTATCATCTCCCTATCCTTGG--CTGCACCTG--------------AAAAGAGCGG-----------GACTCTGCAGGTAACCCGATTTTCTCCACCAGGTGAGTCCCGGATGGAGGCGTCAACTACAAGACCGGGAACAG--CACTCCTGGGGCTTTGCTGGAACCATCGGCGTGGGAATGCTGTCTCTTCCCTCGCCAGAAATACGACAAGTTCCCGGCGGGTAGCAGACTTGGTTCTA-----ATTTTCCTCGCCCCAGCCTCTTGGAGCGCCCCGCATGCTGTGGGCGTCTAATAAA-TGCAGTCGGCCCTGCTTGGTCTAAAACTCTCCCT---TGAGTGGACCGGACACTAAACCCCTCCAGGGGTCACAG--CTGCCGCTC s panTro1.chr19 38152204 443 - 82489036 TTTCTCCTCCTGAGATAACGAAATACAGTAGCGTATGAACAACTCTTCATACATTACTCTCCAAGGTTTATCTTGTTAATCCTTTAAGAC-------GTATCATCTCCCCATCCTTGG--CTGCACCTG--------------AAAAGAGCGG-----------GAGTCGGCAGGTAACCTGATCTCCTCCACCAGGTGAGTCCCGGATGGAGGTGTCAACTACAAGACCAGGAGCAGAGCATTCCTGGGGTTTTGCTGGAACCATCGGCGTGGGAATGCTGTCTCTTCCCTCGCCCGAAAGACGCCAAGTTCCCGGCAGGCAGCGGACTCGGTTCTA-----ACCTTCCTCGCCCCAGCCTCTCGGAGCGCCCTGCACGCAGTGGGCGTCTAATAAAATGCAGTTGGCCCTGCTTGGACAAAAGTTCTCCCT---TAAGTGGACCGGACACTAAACCCCTCCAGGTGCCACAGAGCTGCCGCGC s mm5.chr11 15056375 412 - 121648857 TTTTTCCTCCTGGGACAGCAAAATACAGTACTGCGTG---AGCTTTCCACACTATATCC------ACCTATCTTGTTCACAGTCTTTGGCCGCATTTGTATTATCTCCCTATGCTTGT-------CCTG--------------GGCAGGGTTGGGGGAAGAATCGAGCAGGTAGGTAACCGGATATGGAGCACCAGGTGAGCCT---GTGGAGGTGGCAATTACAATACTCAGAGCTAAGCACTCCTGGGAATTTGCTGGAGCGTTCGATGTGGGAATAGCATCTTGGC--------GAATT------AATTCTT---------CGGACTTGGGTCTA-----ACTTTACTCTCGCCAGCCTCTCAGAGCGC-------GCAGTGGGAGTATTACTCG-GGCATTCTGCCCTGTAGGGACACAGGCGATCTTTCAGTGAGCTAGCTGGTCAGTAGGCCCCTCT-GGTGCCATCGAGCCGGCG--- s rn3.chr10 14448550 424 - 110733352 TTTTTCCTCCTGGGATAGCAAGATACAGTACTGCCTG---AGCTTTAAACACAGTATCC--ACCTATCTATCTTGTTCACAGTCCTTGGCGGTATTTGTATCATCTCCCTATGCCTGT-------CCTGCTAGGGAAAAAAAAAAAAGAGTCC-----------GAGCAGGTAAGTAACCGGATCTGGAGTACCAGGTGAGTCC---GTGGAGGTGGCAATTACAATACTAAGAGCTAAGCACTCCTGGGAATTTGCTGGAACGTTCGATGTGGGAATAGCGTCTTGTC--------GAATT------AATTCTT---------CGGACTCGGGTCTAACTTTACTTTACTCTCGCCAGCCTCTTAGGGCGC-------GCAGTGGGAGTATTACTCG-GGCATTCTGCCCTGTAGGGACACAGGCTGTCTTTCAGTGAGCTAGCTGGTCAGCAGGCCCCTCT-GGTGCCACGGAGCCGGCG--- s canFam1.chr9 7174708 448 + 53642819 TTTTTCTTCCCGAGATAACGAGATACAGTTCTGTATGAAAAGCTTTTCAAACACTGCTCTCCAAGGCTTATCTTGATAATAATCCTTTAAGGTATTATTATCAATCGCCTATCCTCCGAGATGCAGCTG------------GAAAAAGAGCCG-----------CAGCGGGCAGGTAACCTGATCTCGTCCACCAGGTGAGTCCAGGATGGAGGTGGCAGCCGGGATACTAGGAGCACAACACCGCAGGGGGGTTGCAGGGGCGCCTGGTGTGGGAATCGTGGCTCTTCCCTCACCCCAGCGACGCTGAATTCCCCGAGGGCAGGGGGCTCGGTTCCA-----ACCTCGCTCGCTCCAGCCCCCTAGAGCGCCGTGCACGCAGTGGGCATCGAAGAGG-TGCAGTCGGCGTCGCACGGACAAAAGCTCTCCCT---TCAGTGGGCTGGACACCAAGCCCCTCCTGGTGCCACCGAGCT--CG--- a score=6095.0 s hg17.chr17_random 1212360 6 + 2618010 CCGCCG s panTro1.chr19 38152647 6 - 82489036 CCGCCG s mm5.chr11 15056787 6 - 121648857 CCGCCG s rn3.chr10 14448974 6 - 110733352 CCGCCG s canFam1.chr9 7175156 6 + 53642819 GCGCCG s galGal2.chr18 2150324 6 - 8919268 CCGTCC a score=7511.0 s hg17.chr17_random 1212366 70 + 2618010 CCACTTTGCTCCTT--GCCTGCTCCCTTC-CCGCGTTCCGCCTGGGACCCTCGGCGGCAG--------------------CTCACACCTTCCC s panTro1.chr19 38152653 70 - 82489036 CCGCTTTGCTCCCT--GCCTGCTCCCTCC-CAGCGTTCCGCGTGGGACCCTCGGCGGCAG--------------------CTCACACCCTCCC s mm5.chr11 15056811 57 - 121648857 CCAGTCTGGGCCGTG-GCGCACGCGCTGC-CCGCAGCTCGCGCGGAGC----------------------------------CAGGCCTTCCT s canFam1.chr9 7175162 93 + 53642819 CCACTTTCTTCCTTTCGCCGGCTGTCTCCACCAAGTTCCGCGTGGGACCCTCGGCGGCGGCGGCGAGCTCccccgcccttctccgcccttccc s galGal2.chr18 2150330 68 - 8919268 CCCCCCCACTCTTT--GGCTTCCCTCCTT-CCACG--CCGCGGTAATTCCTCCCAACCAC--------------------CTCCCATCTCCCC a score=57478.0 s hg17.chr17_random 1212436 238 + 2618010 --TCAGTGCCGGTGCCCGCT-------------------------------------------CCGGGCATCTgg----------cgcgcgcccgccggccccgcc--ccgcT---------------------GACCCCACCGGCCCCGCCTCCCATCTCC-CCCTCGCCCCCCCGGAGCCGACAAATGGCCGCG---------------------GCGGCCTCAGGTGCGGCGTCACTCAGACAAGGGGGCGGGTGGAGGAGGAAGCGGCCAAGTCCACAGTCCTGCTCCGGTGCCGCCGAGCACCGCCCACCTCAGCTGAC-CAGCCCTGTCCGCT s panTro1.chr19 38152723 266 - 82489036 --TGACTGACTGTGCCCGCCGG--------------------------------CCCCG---CCCTGGCACCCTG----------CGCGCGCGCGCCGgccccgcc--ccgccccgccccgctcgccccgccccg-ccccgccggccccgccTCCCGTCTCCTCCCCCGCCCCCT-GGAGCCGACGAGTGGCGGCG---------------------GCGGCCCCAGGTCCCGGGTCCCTCAGACAAGAGGGCGGGTGGAGGAGGAAGCGGCCGAGCCCAGAGTTCTGCTCCGGCGCCGCCGAGCACCGCCCGCTTCAGCCGAC-CAGCCCCGTCGGCT s mm5.chr11 15056868 248 - 121648857 --CTGGCGCC----CCAGGCG------------------------------------------CAGGAGACCTCGCCCACAAGCCCGCCCCCTCGCCGGCCCCGCCCACCGCA-----------ACCCCGCCCCG--CCCGCCGGCCCCGCC-CCCGTCTCC-TCCCCGCCCCCA-GGAGCCGACGAGTGGCGGCGGCGGCGGCGGCGGCAGCGGCTGCGGCCCCAGGACCGGGTTCTCTCAGACAAGAGGGCGGGCGGAGGAGGAAGCGGCCGAGCAC---------------------------CCGCCCGCCTCAGCAGACTTCGCACCGTCCGCT s canFam1.chr9 7175255 282 + 53642819 cgcctgcgcccaggcccgcccgggccccgcgccccgcgccccgcgccctcgcgcccccgcgccccgggcacccag----------cgcgcgcccgcccgc--------ccgcc--------------aggccccg-cccggcgggccccgcctccggtctcc-tccccgccccCC-GGAGCCGAGGAGTGGCGGCG---------------------GCGGCCCCAGGACCCGGTTCCCTCAGACAAGAGGGCGGGTGGAGGAGGAAGCGGCCGAGCCCCGAGTCCTGCTCGGGCGCCGCAGAACGCCGCCCGCCTCGGCCGAG-CAGCGCCGGCGGCT a score=2594.0 s hg17.chr17_random 1212674 12 + 2618010 ACTAGGCCTCGC s panTro1.chr19 38152989 12 - 82489036 ACTGGGCCTCGC s mm5.chr11 15057116 12 - 121648857 CCCAGGCCTCGC a score=-4884.0 s hg17.chr17_random 1212686 24 + 2618010 CTAGA-----GGAGGGAAAGGCC---------------------------------------------------------------------------GTGG------------------CG s panTro1.chr19 38153001 122 - 82489036 CGAGACGAGAGGAGGGAAAGGCCTcggcggccgcgaggaggcggcgggggcggccgcggcTGCCGCTTTGTTGTGCGGCCCGGGCCGAGGAAGGAGAAGTGGGAGGAGGGGGGAGCTCGGCG s mm5.chr11 15057252 23 - 121648857 -----TGGGAGGAGGGGGGAGCT---------------------------------------------------------------------------CTG-------------------CG a score=23083.0 s hg17.chr17_random 1212710 83 + 2618010 TCC-GCTCCCTCCGCG-----------GCTCATGGCGACGACGCTTGGCACATCCGGGACCCTCAGGCCGCTGCAG-TCGCGTCGCCGGCTGCTCG- s panTro1.chr19 38153123 85 - 82489036 TCCCGCTCCCTCCGCG-----------GCTCATGGCGACGACTCTCGGCACATCCGGGACCCTCCGGCCGTGGCGGACCGCGGCGCCGGCTGCTCG- s mm5.chr11 15057275 84 - 121648857 TCCCGCTCCCTCCGCG-----------GCTCATGGCGACGGCGCTCGGCACATCCGGGACCCTCCGGCCCTGGCGG-CCGCGGCGCGGGCTGTTCG- s galGal2.chr18 2150681 89 - 8919268 TCC-GCCTCCTCCTCGGCCCCGGCCCCGCTCATGGCGACG---CTGGGCACATCCGGGCTTCTCCTCCTCCTCCGG----CGGCCGCCGCTGCTTTG a score=5179.0 s hg17.chr17_random 1212793 17 + 2618010 GGCCCCAGCCCCGGCCG s panTro1.chr19 66902758 17 + 82489036 GGCCCCAACCCCGGCCG s mm5.chr11 15057359 17 - 121648857 GACCCCGGCCCCGGCCG s galGal2.chr18 2150770 17 - 8919268 AGCGCCCAACCCGACTC a score=10657.0 s hg17.chr17_random 1212810 24 + 2618010 CTGTGGTGACTCCGCCGCGCCTCG s panTro1.chr19 66902775 24 + 82489036 TTGTGGTGAATCCGCCGCGCCTAG s mm5.chr11 15057376 24 - 121648857 CTGTGGTGACTCCTCTGCGCCTCG s rn3.chr10 14449617 24 - 110733352 CCACGGTGACTCCTCCGCGCCTCG s galGal2.chr18 2150787 24 - 8919268 CATTAACGCGTCCCCTCCCCCCCG a score=7904.0 s hg17.chr17_random 1212834 22 + 2618010 CCGTCGCCCCCGT-----------------CCCGCCCGC s panTro1.chr19 66902799 22 + 82489036 CCGTCGCCCCCGT-----------------CCCGCCCGC s mm5.chr11 15057400 39 - 121648857 CCGTCGGCCCAGCCCAGCCCAGTCCGCCCGCCCGCCCGC s rn3.chr10 14449641 31 - 110733352 CCGTCGTCCCAGCCCAGCCCAG--------CCCGCCCGC a score=600.0 s hg17.chr17_random 1212856 1 + 2618010 C s panTro1.chr19 66902821 1 + 82489036 C s mm5.chr11 15057439 1 - 121648857 C s rn3.chr10 14449672 1 - 110733352 C a score=50973.0 s hg17.chr17_random 1212857 80 + 2618010 G---------------------------------------------------------CCC---CAGCCGCCAGGGACATGTCTAACCTCGGAGGCCGTAGGAACGGGCCTGTCGAAGTGCGCCTGACAGGTGAAGGGGG s panTro1.chr19 66902822 80 + 82489036 G---------------------------------------------------------CCC---CAGCCGCCAGGAACATGTCTAACCTCGGAGGCGGTAGGAACGGGCCTGTCGAAGTGCGCCTGACAGGTGAgggggg s mm5.chr11 15057440 114 - 121648857 GGC---------------CCGCCGGCCGCGAGCGCCGCCGCCGCCGCCGCCGCCACCTCCC---CCGCCGCTGGGGACATGTCTAACCCCGGAGGCCGGAGGAACGGGCCCGTCAAGCTGCGCCTGACAGGT-------- s rn3.chr10 14449673 112 - 110733352 CGCGGGCCGCGAGCGCCGCCGCC-------------------------GCCGCCGCCTCCC---CCGCCGCTGGGGACATGTCTAACCCCGGAGGCCGGAGGAACGGGCCCGTCAAGCTGCGCCTGACAGGTGAGCAGGG s canFam1.chr9 7175973 79 + 53642819 --------------------------------------------------------CGCCC---CCGCCGCCGGGGAC-TGTC-ATCCCCGGGGGCCGGAGGAACGGGCCCGTCAAGCTGCGCCTGTAAGGTGAGGGGAG s galGal2.chr18 2150957 83 - 8919268 ---------------------------------------------------------GCCCGAGCCGCGGCCGGGTACATGTCCAACCAAGGGGCTCGGAGGAACGGGCCCGTCAAGCTGCGGCTGACTTTTGACGCTGA a score=-1540.0 s hg17.chr17_random 1212937 11 + 2618010 CGCGGCGGGCC s panTro1.chr19 66902902 11 + 82489036 cgcggcgggcc s rn3.chr10 14449785 2 - 110733352 CG--------- s canFam1.chr9 7176052 2 + 53642819 C---------C a score=15109.0 s hg17.chr17_random 1212948 56 + 2618010 GGGCTGGGCAGCCGCGAGGTGGGCGAGCTGGC-GGGGGTGCTTGTG-GCCTTGGGAAG s panTro1.chr19 66902913 56 + 82489036 gggcTGGGCAGCCGCGAGGTGGGCGAGCTGAC-GGGGGTGCCTGTG-GCCTTGGGAAG s mm5.chr11 15057554 40 - 121648857 ---------------GAGCTGGGCGGGC-GGC-TGTGGCGCCTGTG-GGCAAGCAGAG s rn3.chr10 14449787 30 - 110733352 -------------------------GGC-GGC-TGCGGCGCCTGTG-GGCAGGCGGAG s canFam1.chr9 7176054 57 + 53642819 GAggggggcggccgcggggcgggcgagccggcggggggTGCCTGTG-GCCTTGGGAAG s galGal2.chr18 2151159 55 - 8919268 gAAACCCGCGGCCCCGGGG-GAGCGAGT-TCC-TGGGGCGGCGGGGAGCCCCGGCGAG a score=557135.0 s hg17.chr17_random 1213004 1243 + 2618010 GGCCAGGGTCGCGATCAGTGGTG-----AGTTGGGGGTCGGAGGTGTGGGAAGGCCTAGTTCAGAGAGAGCAATTGGAAAACCACTT-GTTCCGGTTTGGACATTGTTTAAAAAGCC--GAGGATGACTCGGGGCGGGGGGGTGGTGTTTTGTGGAGGGGAGGGTACACCAGTTCGCATCGCAGGCGGATTTCAGGTCGGAAAGTCTTGGTCAAGGAGCCCG-------CTCCCGGGGCTCGGGGAACAGCCCCTGGGCTACCGCCCAGGTGAGATCGTGAAGGGGATGAAGAGCTCCCGTGGCGAGGATTATTGAATTCGGTTGCTGACTGCGCGCAGTAAACACTCCTTAAAGATG-----GAGCGCTTAACGGGAGGGTGTGCGTCTGTGTTCCCGGGT--------------------------TGTTACCTTGCACACACCCACTTATGCCCGCGTGAAAAACCTTTACTCCCC---GCCGCCGGCCACCGCTGCCAGGGTCACACACCTT-AAACTCACGTCTCTCTGAGGAGGG----GAGAC--AGGTTGAC---------------------TTCCGGTGTGCCTGTCTGATCCGACGGCT-TGGGCTCATTGTACA--CTGTGTTTTGGAAG-TGTCTGATTGTAGGGTGGCATGTTTGGGGGTTGTTCCTTATAGGCCGCAGAACTTGTGTCTCACTTC-TAGCTCCAGACCTGCTTTAAAAACACAC---TTTTTTTTTTGGTGGGGGGGCGGAGAGGGTACAATTCTAAGTA-TGTCCTCATAC--AAATTTTCGAACAAACTTTCTGTTACTCTC-CCCACCCTCCCCCTTCCTTT-TTCGAAATGGAAAAGAGTGTCCAGAGGGGTTGCCAGATAGAAGACTAC------ACTTACAAAGTGTTTATGATTCCAGGTGCATGAAATCTTTAAC--ATTACAGGTACGTTTTGCT--TACAGTGCCA-TTTTTGGTATTCTTACAGGGACA--TGCCACCCCCGTTTTAGGAGAACTTGTATTTGGTTTGAGAA--GGAATTGGAATCA-CGGCGTTATCCTACCT--TCAC--CATTTACCCCTGATAAATTGTCCACGTTTATATTTGGGTGAGTGGTGAGAAAGATAATTTTCCG----TAGAGGATTTGTGTGTGCGTGCACATGT----------------ACTAATAAACTGTAATT-ATATTTGCCCACACTAGACTTTGAGATTTATTTGGACTAATTTTGCAGTTGAATGCTTGTGTGTCACATCCCAGTCCACTGGCTAAACTTGCTGGATGAAAACTTGCAGTGAATTTGGTATTTGAGAATTTAGCTTGAATGTGTATGTTGGCTGCA s panTro1.chr19 66902969 1247 + 82489036 GGCCAGGGTCGCGAGTAGTGGTG-----AGTTGGGGGTCAGAGGTGTGGGAAGGCCTAGTTCAGAGAGAGCAATTGGGAAACCACGT-GTTCCGATCTGGACATTGTTTAAAAAGCC--GAGGATGACTCGGGGCGGGGGGCTGGTGTTTTGTGGAGGGGAGAATACACCGGTTCGCATCGCAGGCGGGTTTCAGGTCGGAAAGTCTTGGTCAAGGAGCCCGACGCTGCCTCCTGGGGCTCGGGGAGCAGCCCCTGGGCTACAGCCCAGGTGAGATCGTGAAGGGAATGAAGAGCTCCCGTGGCGAGGATTATTGAATGCGGTTGCTGACTGCGCGCAGTAAACACTCCTTAAAGATG-----GAGCGCTTAACGGGAGGGTGTGCGTGTGTGTTCCTGGGT--------------------------TGTTACCTTGCACACACCCACTTATGCCCGCGTGAAAAACCTTTACTCCCC---GCCGCCGGCCACCGCTGCCGGGGCCACACACCTT-AAACTCACGTCTCTCTAAGGAGGG----GAGAC--AGGTTGAC---------------------TTCCGGTGTGCCTGTCTGATCCGACCGCT-CGGGCTCATTGTACA--CTGTGTTTTGGAAG-TGTCTGATTGTAGGGTGGCATGTTTGGGG-TTGTTCCTTATAGGCCGCAGAACTTGTGTCTCACTTC-TAGCTCCAGATCTGCTTTAAAAACACAC---TTTTTTTTT-GGTGGGGGG-CGGAGGGGGTACAATTCTAAGTA-TGTCCTCATAC--AAATTTTCGAACAAACTTTCTGTTACTCTC-CCCACCCTCCCCCTTCCTTTATTCGAAATGGAAAAGAATGTCCGGAGGGGTTGCTAGATAGAAGACTAC------ACTTACAAAGTGTTTATGATTCCAGGTGCATGAAATCTTTAAC--ATTACAGGTACGTTTTGCT--TACAGTGCCA-TTTTTGGTATTCTTACAGGGACA--TGCCACCCCCGTTTTAGGAGAACTTGTATTTGGTTTGAGAA--GGAATTGGAATCA-TGGCGTTATCCTACCT--TCAC--CATTTACCCCTGATAAATTGTCCACGTTTATATTTGGGTGAGTGGTGAGAAAGATAATTTTCCG----TAGAGGATTTGTGTGTGCGTGCACATGT----------------ACTAATAAACTGTAATTTATATTTGCCCACACTAGACTTTGAGATTTATTTGGACTAATTTTGCAGTTGAATGCTTGTGTGTCACATCCCAGTCCACTGGCTAAACTTGCTGGATGAAAACTTGCAGTGAATTTGGTATTTGAGAATTTAGCTTGAATGT--ATGTTGGCTGCA s mm5.chr11 15057594 1161 - 121648857 GGCCGGGGTCGCGGTCGGTGGTGGCGTTGGACGGGAATCCG-GGCGTGGGAAGGCCTAGTTT--AGGGAGTCATTGGAGAACCACTTAGCTGGGGTTGGGAAATTCTTCAGAACGCCCAGTGTGTGGCCCGTG----------GGTCTCCCGTGGAG--------------------------GGCGGATTTGAGGTCCTGAAGTCTCGT-------------------TTCCTGGGGTCACAGGAGCAGCCCCTGGGCTCCTGCCCAGGTGGGGTCGGGAAAG----------------------GGATTACTGAATCCAGTTGCTGACTGCGCGCGGTAAACACTCCTTAAACATGGAG-TGAGTGCTTAACGGGAGAGT----GCTTGTGTTCCCGGGT--------------------------TGTTAACTTG--GACACCTACCTATGCCCGGCAGTGAAACCTTTACTCTCCAGTGCTGCCAACCTCTGTGGCCAGTGCCACACACCTT-AAACGCACGTCTCTGGGAGGGAGGGACCGAGACTGTGGTTGGC-------------------TTTTCCGGCGTGTCTGCCTGATCCCACGACTCCCGGCTCATTGTACACTCTGTGTTTTGGAAGTTGTTTGATTGTAGGGTAGCATGTTTGGGG-TTGTTCCTTGTAGGCCGCAGAACTAGTTGCTCATGTCTTAACTCCAGACCTGGTTTAGAATCCC--------TTGCTT-----------TGCAATGTGT----TTCTCAGTC-TGGACGCATAC--GAACTTTTAAGCTAACTTTCACTAGTCCTC-TCCACACTTCTCA-CCCTCT-TTCTAAATGGAAAGGAATGCTCAGAGGGATT----TGGGAAAGACTGT------------------TTAATGTTCCCAGCTGCAGGGAGTTGTTAACATATTACAGGTATAATTTGCT--TACGATGCCA-CTTCTGATATTCTTCCGTGGTCAACGTCCCCCTCCTTTTAAGGAAAAATTGCGTTTGGTTTAAAGCGTGTAATTGAAACTATTGTCCCTCTGCTAGCTAGTCACGTCATTCACAGCAAGTAAATTGTCCACATTTATATTCAGATGTGTGGTGAAGAAGACGGCATTTTG----TAGTTGGTTCATATGCATTTGCGCCAGCG---------------AAGGATAAGCTGTAATT-ATGTTTGCCCACACTAAACTTTGAGATTTCTGTGGGTGAACTTTGTAGTTGAATGTTTGTGTGTTAACCGGCAGTCCATCGGCTGTACTTTCTAGGT---AGCTTGAAGTGAATTTGGTATTTGAGAACTTAGTTGGAATGT--ATGTTGGCTACA s rn3.chr10 14449817 1159 - 110733352 GGCCGGGGTCGCGGTCGGTGGTGGCGTTGGACGGGAATCCG-GGCGTGGGAAGGCCTAGTTC--AGGGAGTCATTGGAGAACCACTTAGCTGGGGTTGGGAAATTCTTCAGAACGCCAAGTGTGTGGCCCGTG----------GGTCTCCCGTGGAG--------------------------GGCGGATTTGAGGTCCGGACATCTAGT-------------------TTCTTGGGGTCACAGGAGCAGCCCCTGGGCTATTGCCCAGGTGGGGTCGTGAAGG----------------------GGATTACTGAATCCAGTTGCTGACTGCGCGCAGTAAACACTCCTTAAATATGGAGTTGAGTGCTTAACGGGAGAGT----GCGTGTGTTCCCGGGT--------------------------TGTTAACTTG--GACACCTACCTATGCCCGGGTGTGAAACCTTTACTCTCTA--GCTGCCAACCTCTGCGGCCAGTGCCACACACCTTAAAACGCACGTCTCTGGGAGGGACT----GAGACTGTGGTTGGC-------------------TTTTCCGGCGTGTCTGCCTGATCCCACGACTCCCGGCTCATTGTACACTCTGTGTTTTGGAAGTTGTTTGATTGTAGGGTAGCGTGTTTGGGG-TTGTTCCTTGTAGGCCGCAGAACTAGTGGCTCACGTCTGAACTCCAGACATGGTTTAGAATCGC--------TTGCTT-----------GGAAATGTGT----TTCTAAGTCTTGGACTCCTACATAAACTTTTAAGCGAACTTTTACTGGTTCTCTTCCACACTTCGCG--CCCCT-TTCTAAATGGAAAGGAATGCTCAGAGGGATT----TGTTAAAGACTG-------------------TTTATGTTCCCAGGTGCAGCAAGTTGTTAACGTATTACAGGTATAATTTGCT--TATGATGCCA-CTTCTGATATTCTTCCGTGGTCG--CATCTCCCTCCTTTTAAGGAAAATTGCGTTTGGTTTAAAGAGTGTAAGTGAAACTATTGTCCCTCTGCTAGCTAGACGCATCGTTCACAGTAAGTAAATTGTCCGCATTTATATTCAGATGTGTGGTGAAAAAGACGTCATTTTGCAGTTAGTTGGTTCATATGTGTGTGCACCAGCG---------------AAGGATAAGCTGTAATT-ATGCTTGCCCACACTAAACTTTGAAATTTATGTGGACGAATGTTGTAGTTGAATGCC--TGTGTTAAATGCCAGTCCGTTGGCTGTACCTTTTAGGT---AACTTGAAGTGAATTTGGTATTTGAGAATTTAGTTTGAATGT--ATGTTGGCTACA s canFam1.chr9 7176111 1271 + 53642819 GGCCAGGGTCGTGATCAATGGTG-----AGCCGGGGGTCGGGGACGGGGGAAGGCCTAGTTCAGGGAGAG-GAGTGGCAACGGGCTC-GCCCCGCTCGGGAGGTTCGGGAGCGAGCC--------GACCGGTGTCGG------GGTCTTTTGTTGAGGGGCGGGCTGCCCGGTGGGACGCGCGGGCTGACTGGAGGTCGGCGCGCGCTGGCCGAGGAGCACGG------CTCT-----------------CCGCGGGGCTGCCGCCCAGGTGGGGTCGTCGAGGGGGCGACGAGCTCCCGTGGCGGGGATTGTTGAATCCGGCCGCTGACTGCGCGCAGTAAACACTCCTTAAAGATG-----GAGCGCTTAACGGGAGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagtgtgtgtTCCCTGGTAACTTG--TTCGCCCAC-TGTGCCCGCCTGCAAGACCTTCACTCTCC---GCCGCCGGCCGCTGCGGCCGGTGCCACACACCTG-AAACGCAAGTCCTTGGGAAGGGGGAG--GAGACCGAGGTGGAttttttttttttttttttttttttCCGGTGTGTCCGCCTGCTCCGCCGACT-CTGGCTCATTGTACACTCTGTGTTTTGGAAG-TGTTTGATTGTAGGGTAGCATGTTTTGGG-TTGTTCCTTGTAGGCCGCAGAACTTGTGTCTCACTAC-TAACTCCAGACCTGCTCTAAGAACACACTTTTTTTTTTTT-----------TTTTGAGGGTACGTTTCGAAGTA-TGTGCTCATAC--AAATTTGCAAGGGAAGTTTTGTCTCTTCTC-CC--CTCCTCCCCTTTCCTT-TTCTAAATGGAAAAGAATGTATGGAGGGGTTCCTAGGTAGAAGGCTTCTTTCTCTCTTGCAAAATGTTTCTGATTCAGAGTGCATTAAATCTTTAAC--GTTACAGGTACATTTTGCTGACACAGTGCCGTTTTTTGGTGTTCTTACATGGTCG--TGTCACCTCATCTTAAGGACAGATTACTTTTGGTTTGAAAAGTGGAATTGAAATCACTGTCGCTCTCCCAGTT--TCAC--CATTCA--------GTATTATCCGCGTCGATGTTTGGATGTGTGGTGAGAAAAATGGTTTTCCT----TAGAGGTtgtgtgtgtgtgtgtgtatgtgtgtgcacgcgcgtgtgAGAATAAACTGTAATT-ATGTTTGCCTACACTAGACATTGAGATTTATATGGACTAATTTTGTAATTGAATGCTTGTGTGTCACATCCCAGTCCACTGGCTGAACTTTGCAGATTAAAACTTGCAGTGAATTTGGTATTTGAGAATTTAGTCTGACTGT--AAATTGGCTGCG a score=1939.0 s hg17.chr17_random 1214247 4 + 2618010 ATTT s panTro1.chr19 66904216 4 + 82489036 ATTT s mm5.chr11 15058962 4 - 121648857 AATT s rn3.chr10 14450976 4 - 110733352 GCTT s canFam1.chr9 7177382 4 + 53642819 ATTT a score=99853.0 s hg17.chr17_random 1214251 336 + 2618010 AGATAATGTAT------TACCTTCATGACAGTTTTCCTTTCCCTAGGG-AAAATTGCCAGGAATCATTA--ACTGAGTGGTTCTTAATGGAAAACCTGGATTGGAGGATACTTATATTCCCCCCCAC-----CCCCCATTCAGTGTCCTTATAT----TGGGAGGAGTCAGTGGAA-ACCTTTGTAGGGGATCTTTGTTGCTTTGGAGTTTATCTGTTGCTGTTACTATCTGGA-----------GTCAGTGATTGTGGAAAGAACATGTGATCCCAGGTGTGCAGAAAGCATCAGAAATAGGCTGTTT-CCATTTACTTTCCTCTGGGCTATATAGAG------AAA-------------------------------------------------------------------------ATGAG-GAAAAAGTAGGGATTTTGA-----------T s panTro1.chr19 66904220 336 + 82489036 AGATAATGTAT------TACCTTCATGACAGTTTTCCTTTCCCTAGGG-AAAATTGCCAGGAATCATTA--ACTGAGTGGTTCTTAATGGAAAACCTGGATTGGAGGATACTTATATTCCCCCCCAC-----CCCCCATTCAGTGTCCTTATAT----TGGGAGGAGTCAGTGGAA-ACCTTTGTAGGGGATCTTTGTTGCTTTGGAGTTTATCTGTTGCTGTTACTCTCTGGA-----------GTCAGTGATTGTGGAAAGAACATGTGATCCCAGGTGTGCAGAAAGCATCAGAAATAGGCTGTTT-CCATTTACTTTCCTCTGGGCTATATAGAG------AAA-------------------------------------------------------------------------ATGAG-GAAAAAGTAGGGATTTTGA-----------T s mm5.chr11 15058966 392 - 121648857 AAAAAATATACATA--GTATTGACCTGGAAGCCTTTTTTTCCCTAGGG-AAAATTACAAGGTATTATTAACACTGGGTGG----------------------GGGGGGTGCTTTGATTTTCATC--------------TTTATTGTGTTCATTTGGGCGGGGGGAAGTCAGCGGAATACAATTATAAAGGATCCTTGGTGCTCT--AGTTTATATATTAATGTTCTTATTAGGC---ACGCCTTTGTCAATAATTACAGAAAGAAATTGTGAGTGTAGGTGTGCAAAAGCCATCAGAAAT-GGATGTT----ATTTATTTCCTTCTGGGATATATATAT------ATATATATACACACACACACACACACACACACATATATACATATACATATATATACACATACACACATATATGTGTATGGGAGAGAAAAGAGGGGTTTGGG-----------T s rn3.chr10 14451188 303 - 110733352 AAAAAATATATACATTGCACTGACCTGAAAGCGTTTCTTTCCCTAGGG--AAATCACAAGGTATTATTAACACTAGGTTG---------------------GGGGGCGTGCTTTGATCTTCATC--------------TTTACTGTTCTT--------TTGGGGGAGTCAGTGGAACACAATTATAAAGGATCTTTGGTGCTCT--AGTTTATATATTGATATTCTTACTAGGC---AGGTCTGTGCCA---ATTACAGAAAGAAATTGTGAGTGTAGGTGTGCAAAAGCCATCGGAAATGGGCTGTA--------ATTTTCTTCTGGGATACATACAT----------------------------------------------------------------------------------GGGAG-AGAAAAAGAGAGGTTTGGG-----------T s canFam1.chr9 7177386 355 + 53642819 TAAAAATATAT------GACTTGTACGACAGTTTTACTTTCTCTAGGGAAAAATTGCAAAGAATCATGA--ACTGAGTGGTTCTTAATGGAAAACCTGGGTTAGGGATCCCCTCCCCCCCCCACTACCGTTGCCCCCATTCAGTTTCCTT---------------------TGGAA-ACCTTTATAAGGGATCTTTGTTGCTTTAGGGTTTATCTACTGATGCTCTTCTCTGGAATCAGTCCCGTGGTGGTGATCACAGAAAGAACCTGTGATTCTAGGTGTTCAAAAAACCTCAGAAATAGGCTGTTGACCATTTACTTCCTTCTAGGCTATGTGCATCATGAGAAA-------------------------------------------------------------------------ATGAAGGAGAAAACAGGTATTTCGGAGGTTTTTTTTT a score=12457.0 s hg17.chr17_random 1214587 15 + 2618010 TTTCTGCAGATAAAA s panTro1.chr19 66904556 15 + 82489036 TTTCTGCAGATAAAA s mm5.chr11 15059358 15 - 121648857 TTTCTTTGGATAAAA s rn3.chr10 14451491 15 - 110733352 TTTCTTTAGATAAAA s canFam1.chr9 7177741 15 + 53642819 TTTTTTTAGATATAA s galGal2.chr18 2152810 15 - 8919268 TTTCTCAAGTTAGAG a score=3884.0 s hg17.chr17_random 1214602 6 + 2618010 TGAGTT s panTro1.chr19 66904571 6 + 82489036 TGAGTT s mm5.chr11 15059373 6 - 121648857 TGAGTT s canFam1.chr9 7177756 6 + 53642819 TGAGTT s galGal2.chr18 2152825 6 - 8919268 AGACTT a score=2962.0 s hg17.chr17_random 1214608 8 + 2618010 GAAGTTTT s panTro1.chr19 66904577 8 + 82489036 GAGGTTTT s canFam1.chr9 7177763 8 + 53642819 GAAATTTT s galGal2.chr18 2152831 8 - 8919268 GAGGTATT a score=576854.0 s hg17.chr17_random 1214616 814 + 2618010 TAGTATGACTCAATAGATCTTAAAGTGTTTATCTGCAGTTTCTGTACTGCCTAAGATACATTATAAAAATCTGTATGTAAAGTTTG--------------------------------------------------------------------------------------------TTAAGAGG--AAAGATTATGCTTATCTTTT----AGGGGAAGAGGGAATATTGAGCTACATTTATAGAG-TGATTTTGT---TTCAGGTTTTTCTGAGGAA---TTTTAAATACC--CTGTGT-------------CCTCTTAATAGTAAAAACAGTTTGAGGTACTCTAAGTTTCTTACAACT----------------ATTTGT-----------CTCTGAATAGTTTTCTCTTAAAATTTGACAAATATTA-AAAACATTGTCCT----TCCTTCTTTGGTTACAGT----GGAGTCTCTTCTGTTTTGCCAGGAAAGTTAACA-----------------------TATTGTTTTTTTCATTTTTGTTCATCATTTACAAATTAGATGGTATAGATTTTAGCAAATAGATCTCAAGAACTGGATTCAATTAGCAGCTTTTAAGGACATAAACATTAAAGGGTTAGATGGAAAAGATTGTTTTGACTGACTGGATAAATGACAGGGCTGTGTTTGATGTGTGTCCAGGAATTGGTCTGGAGCTGGTGCCCAACTTCTCAGTCCATCTTGAGAAGCCAAATAAAATACTTAACCTAGGCCTCATTTTGTTCAAAAAAAAAAAAAAAAAAA-GTTGATTCTTTGTGAAGACCTTA-----------AGAAATGTTTGGCATACCTTTAGACTAAGTG----ACAGTTCATTTAGATCTGGGTTCCCTAATAGAGGAAAAAAAATCACTTAAAAAAA----------GACAGATCCCACAGCGAATTTATATTTGGTTTACAATACACTTGGGCTATAAGATGTTTTAAAATTATTGTTCT s panTro1.chr19 66904585 809 + 82489036 TAGTATGACTCAATAGATCTTAAAGTGTTTATCTGCAGTTTCTGTACTGCCTAAGATACATTATAAAAATCTGTATGTAAAGTTTG--------------------------------------------------------------------------------------------TTAAGAGG--AAAGGTTATGCTTATCTTTT----AGGGGAAGAGGGAATATTGAGCTACATTTATAGAG-TGATTTTGT---TTCAGGTTTTTCTGAGGAA---TTTTAAATACC--CTGTGT-------------CCTCTTAATAGTAAAAACAGTTTGAGGTACTCT--GTTTCTTACAACT----------------ATTTGT-----------CTCTGAATAGTTTTCTCTTAAAATTAGACAAATATTA-AAAACATTGCCCT----TCCTTCTTTGGTTACAGT----GGAGTCTCTTCTGTTTTGCCAGGAAAGTTAACA-----------------------TATTTTTTCTTCCATTTTTGTTCATCATTTATAAATTAGATGGTATAGATTTTAGCAAATAGATCTC---AACTGGATTCAATTAGCAGCTTTTAAGGACATAAACATTAAAGGGTTAGATGGAAAAGATTGTTTTGACTGACTGGATAAATGACAGGGCTGTGTTTGATGTGTGTCCAGGAATTGGTCTGGAGCTGGTGCCCAACTTCTGAGTCCATCTTGAGAAGCCAAATAAAATACTTAACCTAGGCCTCATTTTGTTCAAAAAAAAAAAAAAAAAAATGTTGATTCTTTGTGAAGACCTTA-----------AGAAATGTTTGGCATACCTTTAGACTAAGTG----ACAGTTCATTTAGATCTGGGTTCCCTAATAGAGG-AAAAAAATCCCTTAAAAAAA----------GACAGATCCCACAGTGAATTTATATTTGGTTTACAATACACTTGGGCTATAAGATGTTTTAAAATTATTGTTCT s mm5.chr11 15059864 858 - 121648857 TAGTGTGATTGAGTAGCTCTTA---TATTTATCTGTCATTTTTTTCCTGCATATGAGAGTTTATACAGATTTATGAGTGACATTTG-----------------------------------------TGAGGTAAACATTATAACCACCGCACTATGGAAACGTCCCCTCAGTGAAGTTTGAGAGGAAAAAGATCACACTAAGTTTCT-----GAGCAAGAAAATACATTAGACTAAATTTATAGAG-TGATTTTGTACACTTAGCTTTTTCTGAAGAA---TTTTAAATATCTGTCCTCT-------------CCTCTTAATTGTAAAAACAGTTTGAACTACTCTCAGTTTCCTAAAACTATT---------GGGAATTTGC-----------CTGTGAATAGTTTTCGC--AAAGTCTGACAAACACTA-AAACCATTGTC------TCTTTGATTGCATATGAT----GGAATCTC--CTGTTTTGCAGGGAGCGTTAACT-----------------------TAC--ATTTTTTCATTTTTGTTCGTCATTTACAAATTAAATAGTATAAATTTTAACAAATAGATCTTAAGAGCTGGATTCAATTAGCAGCTTTTTAGGACACAAACATAAAAGGGTTAGATGGAAAAGATTGTTTTGACTGACTGGATAAATGACAGGGCTGTGTTTGATGTGCGTCCAGGACTTAGTCTGGAGCTGGTGCCCAACTTCTCAGTCCATCTTGAGAAGCCAAATAAAATATTTAACCTAGGACTCTTTCTGTTTTTTAAAAAAAA---------GTTGATTCTTTGTTAAGACCTTA-----------AGAAATGTTTGGCATACCTTTAGATTAAGTGTTTAACAGTTCATTTGGATCTGGACTCCCTAATCGAGG-AAAAAAA---CTTAAAGAAA-----------AGAAATCCCACAGTGAACTTTTATTTGGTTTATAATACACTTGGGCTATAAGATGTTTTAAGATTACTGCTTT s rn3.chr10 14451936 858 - 110733352 TAGTGTGACTGAGCAGCTCTTA---TATTTA--TGTCATTTTTTTTCTGTATATGATAGTTTAAAAAGATTTATGAGTGGCATTTGTTAGGTGAACATGATAACCACTGCACTAAAGAAACTTCCCTTGAGTGAAGT-----------------------------------------TTGAGAGGAAAAAGATCACACTTAGTTTCT-----GAGCAAGAGGATACATTCGACTAAATTTATAGAG-TGATTTTGTACACTTAGCTTTTTCTGAAGAA---TTTTAAATATCTGTCCTCT-------------CCTCTTAATTGTAAAAACAGTTTGAACTACTCTCAATTTTTTAAAGCTATT---------GGGAATTTTC-----------CTGTGAATAGTTTTCGC--AAAGTCTGACAAATATTA-AAACCATTGTTGT---CTCTTTGATTACATATGGT----GGAATCTC--CTGTTTTGCAAGGAACATTAACT-----------------------CAC--ATTTTTTCATTTTTGTTCATCATTTACGAATTAAATAGTATAAATTTTAACAAATAGATCTTAAGAGCTGGATTCAATTAGCAGCTTTTTAGGACACAAACATAAAAGGGTTAGATGGAAAAGATTGTTTTGACTGACTGGATAAATGACAGGGCTGTGTTTGATGTGCGTCCAGGACTTGGTCTGGAGCTGGTGCCCAACTTCTCAGTCCATCTTGAGAAGCCAAATAAAATATTTAACCTAGGACTCTTTTTGTTTAAAAAAAAAA----------GTTGATTCTTTGTTAAGACTTTA-----------AGAAATGTTTGGCATACCTTTAGATTAAGTGTTTAACAGTTCATTTAAATCTGGATTCCCTAATAGAGG-AAAAAACTTAGTTTAAAAAA-----------AAAAAT-CCACAGTGAACTTCTATTTGGTTTATAATACACTTGAGCTATAAGTTGTTTTAAGATGACT--TTT s canFam1.chr9 7177771 815 + 53642819 ----------TAAAAGATCTTAATGTGTTTATTTGTGGTTTCCTTACAGTCTATGATACATTATAAAAATCCATGAGTAAAC------------------------------------------------------------------------------------------------TTAGGAGA--AAAGATGACACCTCTTTTTTTTGGGGGGGGAGAGGGAACACTGGGCTAAATTTATAGAG-TGATTTTGTATTTTTAGATTTTTCTGTGGAA---TATTAAATACA--CTGTGT-------------CCCCTTAATTGTAAAAGCAGTTTGAGGTACTCTCAGTTTTTGAAAACCATT---------GAGAATTTGT-----------CTCTGTCATATTTTAAGAAAAAGCTATTCAGATATTA-AAAACATTGCCCTCTCCTTTTTGGTTATATTTGGT----GGATT-----CTGTTTTGCCAGGAAAGTTAACT-----------------------TAT--ATTTTCTCATTTTTGT---CCATTTACAAATTAGATGGTATAGATTTTAACAAATAGATTTCAAGAGCTGGATTCAATTAGCAGCTTTTTAGGACATAAACATTAAAGGGTTAGATGGAAAAGATTGTTTTGACTGACTGGATAAATGACAGGGCTGTGTTTGATGTGCGTCCAGGAATTGGTCTGGAGCTGGTGCCCAACTTTTCAGTCCATCTTGAGAAGCCAAATAAAATATTTAACCTAGGCCTCGTTTTGTTTGAAAAAAAAAAAAAAAA---GTTGATTCTTTGTTAAGACCTTA-----------AGAAATGTTTGGCATACCTTTAGACTAAGTGTTTAACAGTTCATTTAGATCCGGGTTCCATAATA-----AGGAAAATTACTTAAAAAAAAAAAAAAAAAGACACATCCCACAGTGAATTTTTATTTGGTTTACAATACACTTGGACTGTAAGATGCTTTAAAATTATTGTTCT s galGal2.chr18 2152839 822 - 8919268 --TTATGCTTTAGTGAACTGCGTGTTGTTTTTTATAAGGTCATTTGCTGTA-----------GGGAAGCTTCATATGT----------------------------------------------------------------------------------------------------TTAAGA----AAAGCTGTTAC------------------------AAACATTTAATTCTATTAATTGAGCTGACATGGT---GTCAGTTCTTGCCTAGGAAAAGTTTTATGTGCA--CTTTGTGGTTCTGATTACCCTTTTTGATTGGAAAAGCAGTTTGAGA-GCTCTTGAATTCT-AAAACTGTTTGGAATTAAAAGAATCTGTATATTCCAATGTTTTAAAAAGTTTATTTTCAAACTT--GCAAATGCTATATAATCTTAATTT----TCTTTGGCT--TTATGATGCTAGCAGTCTT--CTGTTCTGGCTTGAATATTTATAGGATTAATTCTGTAAACATTGTGTAA--TACTTATCTTTTCTATTCGTTATGTCCAAATTAGATACTATAGA-TTGAAAAAATGGAT-TCAAGAACTGGATTCAATTAGCAGTTTTTCAGGACATAAACATTAAAGGTTTAGATGGAAAACATTGTTTTGACTGACTGGATAAATGACAGGGTAATGTTTGATGTGAGTCCAAGAGCTGATCTGTAG-TAGTGCCCAACTTCTCAGTCGATCCTGAGGAGCCAAATAAAATATTTAACCTAGGCCTCATTTTGC-----AAAAAAG----------GTTGATTCTTTGTTGGGACCTTAAGAAAGTTCTGAGAAATGTTTGGCATACCTTTACACTAAGTGTTTAACAGTTTATTTAGGTCTGGGTTCCATAACAGAGA-AAAACCACAGCGGTGGCATA-----------------CTTCTAGTAAGTTTTTATTTAGTTTGCAGTGCATCTGTGTTA-AATGTTTCTTCATGTTCTTCTTCT a score=67045.0 s hg17.chr17_random 1215430 139 + 2618010 TTGCTTTAAGTTAATAACATATTAGTATTTTAAATTTATAG--AGTACCTTTGATTTCAAGATGCTGTATAAACTTCAGTTACTTGGTAATAACCTTATTGTGGAATTGCCCCTTTACTGAAAGGTATCAACATTTCTTGC s panTro1.chr19 66905394 139 + 82489036 TTGCTTTAAGTTAATAACATATTAGTATTTTAAATTTATAG--AGTTCCTTTGATTTCAAGATGCTGTATAAACTTCAGTTACTTGGTAATAACCTTATTGTGGAATTGCCCCTTTACTGAAAGGTATCAACATTTCTTGC s mm5.chr11 15060722 133 - 121648857 TTACTTTAAGTTAAAGCCAT-TTAAAAATTTACATTTATGG--AATACCTTTGATTCCACAGTACTTTATGAACTGCAGTTAATT----ATATCCTTAATGGAGAATCGCCCA-TTGCTGAAAGGTGCTAACAATTCTTTT s rn3.chr10 14452794 134 - 110733352 TTATTCTAAGTTAAAGCCAT-TTAAAAGTTTACATTTGTGG-AAATACCTTTGATTCCACGGTACTTTATGAGCTGCAGTTAATT----ACATCCTTAATGGAGAGTCGTCCA-CTGCTGAAAGGTGTTAACAGATCTTTC s canFam1.chr9 7178586 137 + 53642819 TTGCCTTAAGTCAGTATCATACTAGTATTTTAAGTTTATATAAAATGTCTTTGATTCCATGGTGCTTTATGAACTGTAGTCAATT----CTATCTTTAACATAGAGTTGTCCCTTTACTGAAAGGTATAAACAGTTTTTAC a score=4470.0 s hg17.chr17_random 1215569 88 + 2618010 GTGGTG--------acacacacacacacacacacacactctctcacacactcatacaca--cTCTCTTTCTGAAGAAAAGGAAACATTTAAACCATGA s panTro1.chr19 66905533 98 + 82489036 GTGGTGacacaaacacacacacacacacacacacacacactctcacacattcatacacacTCTCTCTTTCTGAAGAAAAGGAAACATTTAAACCATGA s rn3.chr10 14452928 26 - 110733352 --------------------------ATAGCCAC-CACCCTC---------------CA--CCC----------------------------CCATGA s canFam1.chr9 7178723 65 + 53642819 GTGATG--------acacacacacatacagtcacaca----------------tacaca--caGGCT-------GGAGAAGAAATATTTGAGCCATGA a score=122857.0 s hg17.chr17_random 1215657 332 + 2618010 GATCTCTGCCCACAATTGATAT---TAGACGTTTCCACATACTATTCTTAAAACC---ACTATC-AGTGAACTGTTTGGTGTTTGTCAACGCTAACAAGGTGGGGCTAATTTAATAATTTAATCCCAAATTTTAGATTCCTCAGGCAATTGGGGGTTAGAATCCGATTTCATCCATCAAGCTACTTCTGTT---CTTTATGACACATTAACATATGATCATTAAAATGGGCTGTGTGGTAACACTATTAACTTCAACTAATATTTCTATAACAAA-------TTGATGACAAAATGTATAATTTCTATATCATTATGTTTATATGAC---TGTCTTATACAGGCTTTTCTTC s panTro1.chr19 66905631 332 + 82489036 GATCTCTGCCCACAATTGATAT---TAGACGTTTCCACATACTATTCTTAAAACC---ACTACC-AGTGAACTGTTTGGTGTTTGTCAACGCTAACAAGGTGGGGCTAATTTAATAATTTAATCCCAAATTTTAGATTCCTCAGGCAATTGGGGGTTAGAATCCGATTTCATCCATCAAGCTACTTCTGTT---CTTTATGACGCATTAACATATGATCATTAAAATGGGCTGTGTGGTAACACTATTAACTTCAACTAATATTTCTATAACAAA-------TTGATGACAAAATGTATAATTTCTATATCATTATGTTTATATGAC---TATCTTATACAGGCTTTTCTTC s mm5.chr11 15060901 301 - 121648857 CATCTCTGCTCACTATGGATAT---------GTTCCATAGACTATTACTAAAATC-CACCCATT-AGTAAATTGTGATATTGTTG--------AAGAAGTTGAGAC--------GAATTTATTTTCAAA--TGAGATTCCTTAAACCATTGGTG---AATATATGGTATGTGCTATCAAGTTACTTCTTTTAGCTTTTATGACACATTAACATTTGGTCATTAAAATGGGCTATCTGGGAGCGCTATTAATTTTAGTTTGTGTGTTTAGAGTAGG-AATGGCTTGGTTAT-ATATGTGTAATTTATA-------------GTGTGA----TATATAATATAGGCTTTCCTAC s rn3.chr10 14452954 306 - 110733352 -GACTCTGCCCACTGTGGATAT---------TTTCCACAGACTATTACTAAAATC-CACCCATT-AGTAAATTGTGATATTGTTG--------AAGAAGGTGAGAT--------GAAGTTATTATCAAG-TTGAGATTCCTTAAGCCATTGGTG---AGTATATGGTCTGTCCTATCAAGTTACTTCTCTTAGTTTTTATGACACATTAACATTTGGTCATTAAAATGGGCTATCTGGGAACACCATTAATTTTAGGTTGTGTATTTAGAGTGGGGAATGGATTGATTAC-ATATGTGTAATTTGTA-------------GTTCGATACATATCTAATATAGGCATTCCTAC s canFam1.chr9 7178788 325 + 53642819 GATCTCTGCCCACGACAAATATTATTAGACTTTTCCATGTATTATTCCTTAGCCCACACTTACCTAGTGAACTGTTTGGTGTTTT-TGATGCTAAGGAGGTAGGGT--------TAATTTAATCCCACATTTGAGATTCCTCAGGCCATTGGTAGTTAAAATCTGATTTGGTCCATCAAG-TACTTTGGTTGTTCTTAATGACACATTAACA----ATCATTAAAAGCGGCTGTATGGTAAAGCTATCAATTTCAACTGTTATTTCTATAGGAAA-------TTGATTATAAAATATAAAATTTGTA-TTCATTGTAC--TTATGAA---TATCTGATATAAGCTTTTCTTA a score=1028.0 s hg17.chr17_random 1215989 6 + 2618010 CAATGG s panTro1.chr19 66905963 6 + 82489036 CAATGG s rn3.chr10 14453260 6 - 110733352 AAACAT s canFam1.chr9 7179113 6 + 53642819 CAATGC a score=3035.0 s hg17.chr17_random 1215995 17 + 2618010 GTTGGATAGAAAAATAt s panTro1.chr19 66905969 17 + 82489036 GTTGGATAGAAAAATAt s canFam1.chr9 7179119 16 + 53642819 TTTGGATAG-AAAACAT a score=27807.0 s hg17.chr17_random 1216012 316 + 2618010 tcttttttttttttttttttttttttgagttggagtcttcctctgtcgctcaggctggagtgcagtggtgcaatctctcggctcactgcaagttccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctggtactacaggcacccgccaccacgcccggctaactttgtttttgtattttaagtagagacggggtttcaccgtgttagccaggatggtctcaatctcctgacctcatgatcctcccaccttggcctcccaaagtgctgggattacaggcatgagccacggtgcccggccTAG s panTro1.chr19 66905986 309 + 82489036 tc-----tttttttttttttttttttgagtcggagtcttgctctgtcgctcaggctggagtgcagtggtgcaa--tctcggctcactgcaagttccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctggtaccacaggcacccgccaccacgcccggctaactttgtttttgtattttaagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccaccttggcctcccaaagtgctgggattacaggcatgagccacggtgcccggccTAG a score=3343.0 s hg17.chr17_random 1216328 7 + 2618010 AAAAATA s panTro1.chr19 66906295 7 + 82489036 AAAAATA s mm5.chr11 15061225 7 - 121648857 GAAAATA s rn3.chr10 14453284 7 - 110733352 GAAAATA a score=44058.0 s hg17.chr17_random 1216335 84 + 2618010 TTCT----------TTACAGT------AAAAACTTTGGGATAATTTTTTAGACCATTATTG-TTTCTGAAAACCAAAGGCTGGAAAAAGCAGCTTAGTGTA s panTro1.chr19 66906302 84 + 82489036 TTCT----------TTACAGT------AAAAACTTTGGGATAATTTTTTAGACCATTATTG-TTTCTGAAAACCAAAGGCAGGAAAAAGCAGCTTAGTGTA s mm5.chr11 15061232 93 - 121648857 TTCTATATATTTGGTTATAGT------AAAAAAATT-AGATAAATTTTTATACCCTTACTG-TTTTTGAAAATCAAATTCTGGAAAATACAGTTTAGTGTA s rn3.chr10 14453291 99 - 110733352 TTCTATATAGTTGGTTATAGTAAAAAAAAAAAAATC-AGGTAAATTTTTATACCCTTACTG-TTTTTGAAAATCAAATGCTAGAAAATGCAGTTTAGTGTA s canFam1.chr9 7179144 85 + 53642819 ----------TTGGTTACAGT------AAAAAATTGGGGTAAATTTTTTATATCCTTGTTGTTTTTTGAAAACCAAAATCTTGAAAAAGCAGTTTAGTATA a score=89914.0 s hg17.chr17_random 1216419 180 + 2618010 ATTTCTAATATTTTAAATTCTTAGGTATGGAGAAGTAGAATAAGATTACTCCTCCAGAACATTTATTTCAGACATTTTTATACATTTAATGTTTTTGTATGCTGTTTCTCATGTTATTAATTTCAAAGCCCTTGGCAATAAGGAGGTTAAACTTGTCTATAGTGTAAGGAAATTTAACTT s panTro1.chr19 66906386 180 + 82489036 ATTTCTAATATTTTAAATTCTTAGGTATGGAGAAGTAGAATAAGATTACTCCTCCAGAACATTTATTTCAGACCTTTTTATACATTTAATGATTTTGTATGCTGTTTCTCATGTTATTAATTTCAAAGCCCTTGGCAATAAGGAGGTTAAACTTGTCTATAATGTAAGGAAATTTAACTT s mm5.chr11 15061325 143 - 121648857 GTTTCTAAAAT----------------------------AACAGATTACTTATCCAGAACTTTTATTTTAGACCTTGTTGTAAATGTAGTGTTTTTGTATGCTGTTTCTCAT----TAATTTTAAAAATCCTTAGCAGTAGAGAAGTTAAGTTGACCTA-----TAAGGAAAATTAATTT s rn3.chr10 14453390 172 - 110733352 GTTTCTAATATTTTAAATTCTTAGGTATGAAGTAAT---AACAGAGTACTTATCCAGAACCTTTATTTTAGACCTTTTTGTAAATGCAATGTTTTTGTATGCTGTTTCTCAT----TAATTTTAAAAATCCTTGGCAGTAGAGAAGTTAAGTTGACCTATA-TATAAGGAAAATTAATTT s canFam1.chr9 7179418 172 + 53642819 ATTTCTAATATTTAAATTTCTTGGATATGGA--------GAAAGATTACTTCTCTAGAACATTTATTGCAGGCCTTTTTGTAACCTAAATGTTTTTGTATGCTGTTCTTCATGTATTAATTTATAAAACCCTTGGCAGTAATGAGGTTAACCTTGTCTATAGCTAAAGGAAAATCAACTT a score=40865.0 s hg17.chr17_random 1216599 112 + 2618010 TAAAAATTTTCCTTTAGATATGCTAGCATCTT-AATCTTG-GTACACTACATATTTTA-TCGAGTCAAGGCTTTAAAAATTATAGCTTCATTCTGTTTGACAGGTTTTTAAGTAT------- s panTro1.chr19 66906566 112 + 82489036 TAAAAATTTTCCTTTAGATATGCTAGCATCTT-AATCTTG-GTACACTACATATTTTA-TCGATTCAAGGCTTTAAAAATTATAGCTTCATTCTGTTTGACAGGTTTTTAAGTAT------- s mm5.chr11 15061468 113 - 121648857 T-AAAACCTCACTTTAAATATACTTGTATTGTAAATATAA-TTTTACTGAGTGCTTTATTTAACTCAAGACTTGAAAATTTTAAGCTTTGTTGCATCTTTTAGGTTTCTAAGCAT------- s rn3.chr10 14453562 113 - 110733352 T-AAAATCTCACTTTAAATATACTTGTATTTTAAATATTA-TTTCACTGAGTGCTTTATTTAACTCAAGACTTGGAATTTTTAAACTTCATTGCGTCTTTTAGGTTTCCAAGCAT------- s canFam1.chr9 7179792 120 + 53642819 TAAAAGTCTCACTTTAGATATGCTGGTATCTT-AGTATTGTTTTTACTGTGTATTTTA-TGGATTCAAGGCTTTATTtttttatttttatttttatttttTTGGATTCAAGGCTTTAAAAAT a score=1600.0 s hg17.chr17_random 1216711 19 + 2618010 GCCTA-------TACACCATAATGAt s panTro1.chr19 66906678 19 + 82489036 GCCTA-------TACACCATAATGAt s mm5.chr11 15061581 16 - 121648857 GAATA--------ATGCC--AGTGAC s rn3.chr10 14453675 26 - 110733352 GAATAATGCCAATGGACCATAATGAC a score=27333.0 s hg17.chr17_random 1216730 292 + 2618010 tttatttattttttaagatggaattttgttcttggctgaagtgtaatggcccaatcttggcccactgcaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccatgcctggctaattttttttgtatttttagtagagatggggtttccccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcctgccttggcctctcaaagtgctgggattacaggcgtgagccactgcaccgagcc s panTro1.chr19 66906697 292 + 82489036 tttatttattttttaagatggaattttgctcttggctgaagtgtaatggcccaatctcggcccactgcaacctccgcctcccaggttcaagcgattctcctgccttagcctcccgagtagctgggattacaggcacccgccaccatgcctggctatttttttttgtatttttagtagagatggggtttccccatgttggccaggctggtcttgaactcctgacctcaggtgatctgcctgccttggcctctcaaagtgctgggattacaggcgtgagccactgcaccgagcc a score=573.0 s hg17.chr17_random 1217022 2 + 2618010 CA s panTro1.chr19 66906989 2 + 82489036 CA s mm5.chr11 15061597 2 - 121648857 CA a score=1535.0 s hg17.chr17_random 1217024 15 + 2618010 TAATGACTTTTATAT s panTro1.chr19 66906991 15 + 82489036 TAATGACTTTTATAT s mm5.chr11 15061599 9 - 121648857 TAGTGACTT------ s rn3.chr10 14453701 9 - 110733352 TGAGGGCTT------ a score=67864.0 s hg17.chr17_random 1217039 241 + 2618010 ACTATAGGTGTTAGTGATTTGAATGTCCCCAGTTCATTTTATTTTTCTTGGTTTCTGAGAAGGAAGACAATGTAGCTGA-GCTCTTTCCTTTTCTCTTAAATCCTGTCTACT---AGTCTAACCCTC-TTCAGGCAGGCAGTAGAACATGTCAAGGTCCTTGATGTAGTTTGGTATTCAT-------AGTAAAGTCTGTGT----ATTTTAGTCATCACTTTTACTTTTTT----CTTGTTGGTTGAGCTGTTACTATCAC s panTro1.chr19 66907006 241 + 82489036 ACTACAGGTGTTAGTGATTTGAATGTCCCCAGTTCATTTTATTTTTCTTGGTTTCTGAGGAGGAAGACAATGTAGCTGA-GCTCTTTCCTTTTCTCTTAAATCCTGTCTACT---AGTCTAACCCTC-TTCAGGCAGGCAGTAGAACATGTCAAGGTCCTTGATGTAGTTTGGTATTCAT-------AGTAAAGTCTGTGT----ATTTTAGTCATCACTTTTACTTTTTT----CTTGTTGGTTGAGCTGTTACTATCAC s mm5.chr11 15061608 202 - 121648857 -CTTGAGGTCTTTGCTA-TTGAATATAACTAATTCATTTCA------CTGGCTTCTGAGGAGGAAACTAAAATGGCATA-GC-----CCCCATCTTTTAAGTGCTCTCTTGTTGCATTCTAGGTTTC-TTCAGATAGGCA------------------------GTAGTTTGGTTTTC----------TTGAGGTATGGGT-----TTTAAATCATAGCTTCTGCCCTTTT----CATATTGATCTA-TTTTTATAATAAC s rn3.chr10 14453710 189 - 110733352 ------------TGCTA-TTGAATGTAACTAACTCATTTTA------TTGGTTTCTGAGGAGGAAACTAAAATGGCATA-------TCTCCGTCTTTTAAGTCTTCTCTTGTTGCAGTCTAGGTTTCTTTCACACAGGCA------------------------ATAGTTTGGTTTTC----------CTGAGGTATGTGT-----TTTAAATCACGGCTTCTGCCTTCTT----CATATTGATCTA---TTTATAATAAC s canFam1.chr9 7179942 243 + 53642819 AGTAGGGGTGTTAGTGATTTGAATGTCCCCAATTCATTTTA-TTTGCTTGGTTTTTGAGGAGGAAGCTAATGTGGCTTAAGCTCCTTCCTCTTGTCTG----------TTCT---AGTCTAACACTC----AGACATGCTGTGGAACCTGCCTAGGTGCTGCATGTAGTTTGGTTTTCATGGCTGAGAAAAGGGTGTGTGTATGTATTAAAATCACGGATTCTACTTTTTTTTTCCCTATTGGTTGAACTGTAACTATCAT a score=9703.0 s hg17.chr17_random 1217280 25 + 2618010 AGCATACTAACAT-------------------------CTCATTTAGCAT-- s panTro1.chr19 66907247 25 + 82489036 AGCATACTAACAT-------------------------CTTATTTAGCAT-- s mm5.chr11 15062208 25 - 121648857 AACATGCTAACGT-------------------------CTTATTCAGCAT-- s rn3.chr10 14454260 25 - 110733352 AACATGCTAACAT-------------------------CTTATTCAGCGT-- s canFam1.chr9 7180185 49 + 53642819 ---ATTCTACCATGTCACTTATTTTGTTTATCATTTAGCATATTTAGCATGT a score=17037.0 s hg17.chr17_random 1217305 50 + 2618010 AACTCAGTTTTCAAGATAAATGAAGGGTCACACTT-AGGCATACAAGATTT-- s panTro1.chr19 66907272 50 + 82489036 AACTCAGTTTTCAAGATAAATGAAGGGTCATACTT-AGGCATACAAGATTT-- s mm5.chr11 15062452 51 - 121648857 AACTCAAATTTCAAGGTAAAGTGGAGGTCAAACTTAAGGCACACAAAATTT-- s canFam1.chr9 7180234 52 + 53642819 AACTCAATTTTCAAGGTAAAC-AAAGGCCACACTTTAGGCACACAAGATTTTT a score=2246.0 s hg17.chr17_random 1217355 11 + 2618010 TATTTTAGCCt s panTro1.chr19 66907322 11 + 82489036 TATTTTAGCCt s canFam1.chr9 7180286 11 + 53642819 TATTGTAGCCA a score=31903.0 s hg17.chr17_random 1217366 346 + 2618010 ttttta-tttttttggcagagtctcattctattgcccatgctggagtgcagtggcaacagcgtgcagtgagtgatcccggctctctgcagctttgacctcct-ggctcaagtgcttttcccaccttggcttcccaagtagctgggactacaggtacgcgccactgtgattggctaattttttttactttttttttttcctctccagtagatatggggtttctccaggttgcccaggctggtcttgaacttctccacttaggagatcctcctgcctcagccttccaaagtgctgggattacaggtgtgagccaccatgcctggccTATTTTAGTCTTTCTTGGTGAGAG s panTro1.chr19 66907333 348 + 82489036 tttttattttttttggcagagtctcattctattgcccatgctggagtgcagtggcaacagcgtgcagtgagtgatcccggctctctgcagctttgacctcctgggctcaagtgcttttcccaccttggcttcccaagtagctgggactacaggtacgcgccactgtgattggctaattttttttactttttttttttctcctccagtagatatggggtttctccaggttgcccaggctggtcttgaacttctccacttaggagatcctcctgcctcagccttccaaagtgctgggattacaggtgtgagccaccatgcctggccTATTTTAGTCTTTCTTGGTGAGAG a score=2522.0 s hg17.chr17_random 1217712 10 + 2618010 TCTTAAAGAT s panTro1.chr19 66907681 10 + 82489036 TCTTAAAGAT s canFam1.chr9 7180526 10 + 53642819 TTTTAAAGAT a score=100.0 s hg17.chr17_random 1217722 1 + 2618010 G s canFam1.chr9 7180536 1 + 53642819 G a score=-150.0 s hg17.chr17_random 1217722 1 + 2618010 G s panTro1.chr19 66907691 1 + 82489036 G s mm5.chr11 15062589 1 - 121648857 C a score=46396.0 s hg17.chr17_random 1217723 137 + 2618010 TAGTATGTCCTCCTCTTTTCAAATAGATCATACTTAGTAGAACTTAATGTTTTACTTATGATTCAATATAATTATGAATATAAATTATTGTTTTGTTGCATATGCAATGTG----AGGATCTCATTAGGGCCTGTAGAGAG s panTro1.chr19 66907692 137 + 82489036 TAATATGTCCTCCTCTTTTCAGCTAGATCATACTTAGTAGAACTTAATGTTTTACTTATGATTCAATATAATTATGAATATAAATTATTGTTTTGTTGCATATGCAATGTG----AGGATCTCATTAGGGCCTGTAGAGAG s mm5.chr11 15062590 105 - 121648857 TAATATATTTTACTTTTAAAAAATAGATCATATCTAACAGAGTATAAAGCTCTATTTGTGATTCATCATAATTTTGAATGTAAGTTATTGTATTAC------TGTAATGTG------------------------------ s rn3.chr10 14454600 99 - 110733352 TACTATATCTTACTTTTAAAAAGTACATCATATCTAACAG--TATAAAGCTCTA----TGACTCATCCTAATTTTGAATGTAAGTTATTGTATTAC------TCTAATGTG------------------------------ s canFam1.chr9 7180537 134 + 53642819 TACAATATCCTACTTTTTCCAAATAGACCATATTTAACAGAACTTAATGTTTTATTTATGATTTAGTATCATTATGAATATAAATTACTGT-CTGT------TGTAATGTGTAGTAAAAGAATATCATGGTGTATAGAGAG a score=16233.0 s hg17.chr17_random 1217860 50 + 2618010 AAGTATTTCACCCTGGCTAAATGGTGATAGGTCATTTA-ACTTGTTCTTAC s panTro1.chr19 66907829 50 + 82489036 AAGTATTTCACCCTGGCTAAATGGTGATAGGTGATTTA-ATTTGTTCTTAC s mm5.chr11 15062695 41 - 121648857 ---------TCCCTAGATAAATGATAATAGGTTGTTTATCTTTGTTCCTG- s rn3.chr10 14454699 29 - 110733352 ---------TCCCTGGATAAATGATGATAGGTCGTTTA------------- s canFam1.chr9 7180671 49 + 53642819 AACTTTG--ACGCTGGCTATATGGTGATAAGTCATTTAACTCCATTCTTAC s danRer1.chrNA 26763935 50 + 390413307 AAGTATTTTGCTCTGGCCAGATGGAAAAAGATAATTTTACTTTGTGTTGC- a score=5662.0 s hg17.chr17_random 1217910 28 + 2618010 TAGTTTTTCTC---TTTGCCTTC----ATTT-TTGT s panTro1.chr19 66907879 29 + 82489036 TAGTTTTTCTC---TTTGCCTTC----ATTTATTGT s mm5.chr11 15062736 32 - 121648857 TATTTTTTCCA---TTGCTCCTCTGTTATTT-TTAT s rn3.chr10 14454728 21 - 110733352 -------TCTT---TGTGCCTGT----ATTT-TTCC s canFam1.chr9 7180720 31 + 53642819 TGCTTTTTCTCTTTTTTACTCTC----ATTT-TTTT a score=5210.0 s hg17.chr17_random 1217938 14 + 2618010 TTACTGATACTTTC s panTro1.chr19 66907908 14 + 82489036 TTACTGATACTTTC s rn3.chr10 14454755 14 - 110733352 TCTCTGTTATTTTC s canFam1.chr9 7180751 14 + 53642819 TTACTGTTACTTTT a score=-123.0 s hg17.chr17_random 1217952 1 + 2618010 T s canFam1.chr9 7180765 1 + 53642819 A a score=91.0 s hg17.chr17_random 1217952 1 + 2618010 T s panTro1.chr19 66907922 1 + 82489036 T a score=0.0 s hg17.chr17_random 1217952 1 + 2618010 T a score=7324.0 s hg17.chr17_random 1217953 14 + 2618010 TTGTCTAAGAATGC s panTro1.chr19 66907923 14 + 82489036 TTGTCTAAGAATGC s mm5.chr11 15062913 14 - 121648857 TTTTTTAAAAAGGC s rn3.chr10 14454769 14 - 110733352 CTATTTAAGACTGC s canFam1.chr9 7180766 12 + 53642819 --TTCTAAGAATGC a score=6357.0 s hg17.chr17_random 1217967 8 + 2618010 TGAACCCT s panTro1.chr19 66907937 8 + 82489036 TGAACCCT s mm5.chr11 15062927 8 - 121648857 TGAACCTT s rn3.chr10 14454920 8 - 110733352 TGAACCTT s canFam1.chr9 7180778 8 + 53642819 TGGACCCT a score=15096.0 s hg17.chr17_random 1217975 21 + 2618010 TGAAATACGCCGTTGTAATCA s panTro1.chr19 66907945 21 + 82489036 TGAAATACGCCGTTGTAATCA s mm5.chr11 15063121 21 - 121648857 TAGAATATACTGTTATAATCA s rn3.chr10 14454928 21 - 110733352 TAGAATATACTGTTATAATCA s canFam1.chr9 7180786 21 + 53642819 TGAAATACACTGTTGTAATCA a score=8201.0 s hg17.chr17_random 1217996 19 + 2618010 GCATTGTTACGTGTTTCTG s panTro1.chr19 66907966 19 + 82489036 GCATTGTTACGTGTTTCTG s mm5.chr11 15063498 18 - 121648857 GCATTATTACATGTTT-TG s rn3.chr10 14454949 19 - 110733352 ACATTTTAAAATATTTATT s canFam1.chr9 7180807 19 + 53642819 GCACTGTTGTGTGTTTCTG a score=5862.0 s hg17.chr17_random 1218015 16 + 2618010 TAT-GATTGAcatgtat s panTro1.chr19 66907985 16 + 82489036 TAT-GATTGAcatgtat s mm5.chr11 15063516 16 - 121648857 TAT-AATTGAGGTGTAT s canFam1.chr9 7180826 17 + 53642819 TATGGactgacatgtat a score=3066.0 s hg17.chr17_random 1218031 25 + 2618010 tgaaagt---ttaagtgc-----cagat---------------gctat s panTro1.chr19 66908001 25 + 82489036 tgaaagt---ttaagtgc-----cagat---------------gctat s mm5.chr11 15063866 45 - 121648857 TGAATAT---CTGTGTGCATACACAGATAAACAAAAATATTAGACACT s canFam1.chr9 7180843 28 + 53642819 tgaatgcttattaagtgc-----cagac---------------actgt a score=203911.0 s hg17.chr17_random 1218056 551 + 2618010 gttaagttcgtatctattatcacttttaattttcatagtagctctaagtgataggAGAAACTGAAAGTTGGAGAAGTACATGTCACAA-CCAAAGTTGTCTA----GAAAGCTTATTAC-AAGTTTATTAGAATTTGTGTGGAAAAATAAAATTGACATATTCTGTTCACTTGGAATTGCACTCGCCCCTAGCAATACTTGC---------CCATCTTTTAAGGCTCAAGTCAAGGATTACTGTTAGCCCTAGAACTTTCCCTGACCTGAGTTGAACTGTCCTCTGTGACTC-TAGGAAACTCTTCTTTTAGT-----ATCAGACCTAACCCGCTGATAGGCATCTATTGTTCCTATGCTTTAAGTTCCATGAAGTCAGGATCCTTGTGTGAGCATGGATTAAGACC-TTTTTGGCATTTTATTTAATGAATGCTGGAGAGCTATAAATAGTTCCGAATAGTTCTGCGTGTGTTCTTTATGGCTAACGCACTGGGTATgag-tggcaagaggtgaggctcttggacagggaccaacctagtttaggaccttattatagtgtgccaagaggttca s panTro1.chr19 66908026 552 + 82489036 gttaagttcgtatctattatcacttttaattttcatggtagctctaagtgataggAGAAACTGAAAGTTGGAGAAGTACATGTCACAA-CCAAAGTTGTCTA----GAAAGCTTATTAC-AAGTTTATTAGAATTTGTGTGGAAAAATAAAATTGACATATTCTGTTCACTTGGAATTGCACTCGCCCCTAGCAATACTTGT---------CCATCTTTTAAGGCTCAAGTCAAGGATTACTGTTAGCCCTAGAACTTTCCCTGACCTGAGTTGAACTGTCCTCTGTGACTC-TAAGAAACTCTTCTTTTAGT-----ATCAGACCTAACCCACTGATAGGCATCTATTGTTCCTATGCTTTAAGTTCCATGAAGTCAGGATCCTTGTGTGAGCATGGATTAAGACCATTCTTGGCATTTTATTTAATGAATGCTGGAGAGCTATAAATAGTTCCGAATAGTTCTGCGTGTGTTCTTTATGGCTAATGCACTGGGGATGAG-TGGCAAGAGGTGAGGCTCTTGGACAGGGACCAACCTAGTTTAGGACCTTATTATAGTGTGCCAAGAGGTTCA s mm5.chr11 15063911 509 - 121648857 GTCAAGCTTCCATCCG-TGTCACTTTTTGTTTGTATAACAGCTGTATGAAGTAGGA-------------GGCTAAGTGTGTTTCAGAA-CTCAAGTTACCTG----ACTAGAGTGTGATGAAACTCAGTATGAGTTATGTAGAAACCCA-----------------CCATTTGGAGTTACTCTTACACTTTGTAATCCTAGCTTTTTTTTTTTTTTTTTTTTTTTTTGGCTCAAAGATTACTATTAGCCTCAGAACTTTCTCTGAGCTGAACTGG--TTTCATCTGTGACTCTTAAGAGACCCTTAATGTAGT-----TTAGGATCTAATACATAGA-AGGCA---GTTGCTGATATGCTGTAAATTCCATGAGGACACGATCCCTGTGTCAGCATAAATTGGGAGC--TTTGGACACTGGACTGAATGAATGTTGGAGACCTGTATGTAATTCTT-ACAGTTCCACAGGTATTTGTTATGATTACTGCATTGGGTGTGAGTTGGTAAGA-------------GATAGAGACCACTCCA-TTTAGGACCTTGCTGT-GTTTGTCAAAAAGTTTG s rn3.chr10 14455509 480 - 110733352 GTCAAGTTTTCATCTATTGTCACTCTTTGTTTGTATAACAGCTGTATGAAGAAGGT-------------GGCTGAGTGCATTTCAGAA-CTCAAGTTCCCTG----ACTAGAGTGTGATAAAACTCAGTATGAGTTATGTGGAAAAGAG-----------------TCATTTGGAGTGACTCTTGCACTTTGTAATCCTAGC------------TTTTTTAAGGC-----TCAAAGATTACTATTATCCCCAGAACTTTCCCTGATCTG------------------GACTC-TAAGAGACCCTTTCTGTAGTTTAGAATAGGATCTAACACATAGA-AGACA---GTTGCTGCTGTGCTGTAAATTCCACGAGGACAAGATCCCTGTGTCAGCATAAACTGGGAGC--TTTGGACACTTGGCTGAATGAATGTTGGAGACCTGTCTGTAATTCTGTACAGCCCC-CAGGTATTTGTCATGATTGCCGCATTGGGTATGAGTTGGCAAGAGGT--------------AGGACCACTCCA-TTTAGGACCTTGCTGT-GTTTGTCAAAAAGTTTG s canFam1.chr9 7180871 530 + 53642819 cttaagtttatatctgttaccacttttaatctgca--atagctctaagaggtagTA------------------AGTACATGTTGGAATCCTAAATTGTCTGTCTAGAAAGCTTGTTACAATGTCTA--AGATTTTGTGTGGAAAAATAAAATAAATATATCCCATGTATTTGGAATTACCCTTGGCCCTTGAGATTCACGG---------TCATCTTTTAAGGTTCAACTCAAGGCTTACCCTTATCCCTAGAACTTTCCTTGACCTGAGTAGGCCTTTCCTCTGTGAC---GAAGAGGCTCTTCCTCTGGT-----ATCAGATCTAACTCAATGAAGGATATTTGTTGTTTCTATGCTGTAAGCTCTAAGGAGCCAGAATCTTTGTTTCGGCATGGATTAAGAGT--TTTTGGCATTTTATTGAATGGATGCTGGAGACAAAGAAGTAATTCTCTGTAGTTCTATATGTGTTCTTTGTGGCTAAAGCACTAAGTATGAG-TGGCAAGAGATGAGTCTATA-GACAGGGACCAACCCA-ATTTGGAACTTACTATATTTTGCCAAGGTGTTTG a score=39873.0 s hg17.chr17_random 1218607 113 + 2618010 ttttttttaaggtggtgggagccattgcaggattttaag-cattgatatatttgttgtttaga--cacaatctgggagcaatatggaggat-ggactggaatgggagccatgaagac s panTro1.chr19 66908578 115 + 82489036 TTTTTTTTAAGGTGGTGGGAGCCATTGCAGGATTTTAAGCCATTGATATATTTGTTGTTTAGA-CCACAATCTGGGAGCAATATGGAGGAT-GGACTGGAATGGGAGCCGTGAAGAC s mm5.chr11 15064422 113 - 121648857 ATTGTTTTAAGATGATGAGAACCACTGAAATATTTGAAA-CATTTTTATATTTGCCATTTAAA---GTAGCCTAGTGGTAATAGGGAAGCTAGAACTGTAATTGAAGCTATAAGGAC s rn3.chr10 14455991 92 - 110733352 ATTGTTTAAAGATGATGAGAACCACTGAAATATTTGAAG-CTTTTTTATATTTGCCATTTAAG----TAGCCTAGCAGTAAT--------T------------GAAGCTATACGGAC s canFam1.chr9 7181596 105 + 53642819 ttttttttAAGGTGG-GGGAACCATTGAAGGATTTTAAG-C---------TTTGATATTTAGAAACATTATCTTGGGGCAGTGGGGAGGAT-AGACTGGGGTGGGAACTGTGAAGAC a score=38205.0 s hg17.chr17_random 1218720 137 + 2618010 tggttttaggataactggttaagaagAT--TCAACAGCAGCCATCGT--TCAGATTTTTTTTCTTGTttgaacat-ttatttccaaatttt--ttattacaaataattgctgtaagcatcttggtgtaggtaactttgattttt s panTro1.chr19 66908693 55 + 82489036 TGGTTTTAGGATAACTGGTTAAGAAGAT--TCAACAGCAGCCATGGT--TCAGATT-------------------------------------------------------------------------------------TTT s mm5.chr11 15064535 138 - 121648857 TGATTTTAGGAGAACCAGTTAAGAGAAT--TTGATAGCAACCATTGT--CAGGTTTCTTTTTGCTATTTGAACTTCTTTTCTCCAAATTTTTATTATCACAGATAATTACTGTAAGCATCTTGGTATAGATAACTT--GTTTTT s rn3.chr10 14456083 140 - 110733352 TGATTTTAGGAGAATCAGTTAAGAGAAT--TTGATAGCAACCGTTGT--CAAGTTTCTTTTTGCTACTTGATCTTTTTTTCCCCAAATTTTTATTATTACAGATGATTACTGTAAGCATCTTGGTATAGATAACTTGGGTTTTT s canFam1.chr9 7181904 135 + 53642819 TGATTTTAGGATAACCAGTTAAGGGGATACTACATAACAACTATTATTGTTACTTTTTTTTTCTTGTTACAACTT-TTACTTCTAAAATTT--TAATTGCAGATAATTGCTGTAAACATCTTAATATGGATAACTT-----TT- a score=37498.0 s hg17.chr17_random 1218772 82 + 2618010 TTTTTTCTTGTttgaacat-ttatttccaaa-tttt-ttattacaaataattgctgtaagcatcttggtgtaggtaactttgatt s panTro1.chr19 38158441 79 - 82489036 TTT----TTGTTTGAATGT-ttatttccaaattttt-ttattacaaataattgctgtaaacatcttggtgtaggtaactttgatt s mm5.chr11 15064587 83 - 121648857 CTTTTTGCTATTTGAACTTCTTTTCTCCAAATTTTTATTATCACAGATAATTACTGTAAGCATCTTGGTATAGATAACTT--GTT s rn3.chr10 14456135 85 - 110733352 CTTTTTGCTACTTGATCTTTTTTTCCCCAAATTTTTATTATTACAGATGATTACTGTAAGCATCTTGGTATAGATAACTTGGGTT s canFam1.chr9 7181960 76 + 53642819 TTTTTTCTTGTTACAACTT-TTACTTCTAAAATTT--TAATTGCAGATAATTGCTGTAAACATCTTAATATGGATAACT------ a score=345.0 s hg17.chr17_random 1218857 5 + 2618010 ttaaa- s panTro1.chr19 66908748 5 + 82489036 TTAAA- s mm5.chr11 15064673 5 - 121648857 TTGGA- s canFam1.chr9 7182039 5 + 53642819 -TAAAA a score=4867.0 s hg17.chr17_random 1218862 31 + 2618010 aggattttttttttttttaggatgcttccat s panTro1.chr19 66908753 30 + 82489036 AGGA-TTTttgtttttttaggatgcttccat s canFam1.chr9 7182044 27 + 53642819 AGGA----TTATTTTTCTAGGATATTTCCAC a score=1950.0 s hg17.chr17_random 1218893 6 + 2618010 aaaaat s panTro1.chr19 66908783 6 + 82489036 aaaaat s mm5.chr11 15065070 6 - 121648857 AAAAAA s canFam1.chr9 7182071 6 + 53642819 AGAAAG a score=24615.0 s hg17.chr17_random 1218899 60 + 2618010 agtgttactgagttcaagtgtgtggatatttttaaggttttgt-----gattaatttttccttta s panTro1.chr19 66908789 60 + 82489036 agtgttactgagttcaagtgtgtggatatttttaaggttttgt-----gattaatttttccttta s mm5.chr11 15065076 65 - 121648857 AGTATTGTCATGTTCAAATGTATTGATCCTTTTAAGATTTTTTTAAAAAATTATTTTGTTGTTTA s rn3.chr10 14456716 64 - 110733352 AGTATTGTCATGTTCAAATGTATTGATCCTTTAAAGATTTTTT-AAAAGATTAATTTTTTATTTA s canFam1.chr9 7182301 58 + 53642819 AGTGCTATTATGTTATGGAGTGTGGATCTTTTCTAAGTTCTTT------ATTAATTCTTCCTCA- a score=21009.0 s hg17.chr17_random 1218959 138 + 2618010 ggctctttcttaaaagagttgggc--ctgtttagagcagcagtaaataa--agatgtccctttttactattctgttgtaagcattagctaattgcattttaaatattttgctaatttCAT-GGCATGTGCCATTTAAACATTC s panTro1.chr19 66908849 136 + 82489036 ggctcttactt--aagagttgggc--ctgtttagagcagcagtaaataa--agatgtccctttttactattctgttataagcattagctaattgcattttaaatattttgctaatttCAT-GGCATGTGCCATTTAAACATTC s canFam1.chr9 7182359 141 + 53642819 GGCTGCTTCCTATAAGAATTGTGCGTATATATAGGGCAGCAGTAAATAAATAAATGTACCTTCTTACTATCCTGTTACAAGCATTGGCT-CTTGTTTTTACATTTTTTTCCTAATTCCATAGAAATATAGTTTTTCAACATT- a score=94408.0 s hg17.chr17_random 1219097 513 + 2618010 GTGAAGCAGAATATTTTCCT----GTCTGTTTACTAATCATATTTATTTTCATTGA------TTTGTT--TGGCCTTGTCCTAGTTA--TGTTAAAGCCTTAGTG-TTTTTCTTATTGATCTACCTGA--TACTTACAAAT-----ATATTAATCTGTTGTCATATTTGC------TACAAACA-TTTCCATGGTGAATTATTTGTCTTTTAATATTGGTCATTG----TTTGGACATGTAGAAATGTGTTATCTTAG--GAGTCAAAATCTGTCCA-----ACTCTTGTT----TTGTTTTTCCTGTTCTATACTTGGA----------AAACCT------------------------TTTTCTTCAAGGAGTTT----GATG--AATAAGT---ACGTTATA---TTTAGTGT------------TTTTTAAAAATGCTTTAATAAACTATTCCCCCTTCAATTC-----------CTATTTAGCCGTCTCATCATTATTTATTAACCAGTTCTTCCTTTCCACAGTG------------------------------------------ATGTAGTATCTT--------TTC-----AGTTAATTATAATAGAGTCAGATATATCTCTTGTT------CAGTGCCATACTGTTTTCAATATTGTAGCTTTATAATTTAGTTTA s panTro1.chr19 66908985 514 + 82489036 GTGAAGCAGAATATTTTCCTA---GTCTGTTTACTAATCATATTTATTTTCATTGA------TTTGTT--TGGCCTTGTCCAAGTTA--TGTTAAAGCCTTAGTG-TTTTTCTCATTGATCTACCTGA--TACTTACAAAT-----ATATTAATCTGTTGTCATATTTGC------TACAAACA-TTTCCATGGTGAATTATTTGTCTTTTAATATTGGTCATTG----TTTGGACATGTAGAAATGTGTTATCTTGG--GAGTCAAAATCTGTCCA-----ACTTTTGTT----TTGTTTTTCCTGTTCTATACTTGGA----------AAACCT------------------------TTTTCTTCAAGGAGTTT----GATG--AATAAGT---ACGTTTTA---TTTAGTGT------------TTTTTAAAAATGCTTTAATAAACTAGTCCCCCTTCAATTC-----------CTATTTAGCCATCTCATCATTATTTATTAACCAGTTCTTCCTTTCCACAGAG------------------------------------------ATGTAGTATCTT--------TTC-----AGTTAATTATAATAGAGTCAGATATATCTCTTGTT------CAGTGCCATACTGTTTTCATTATTGTAGCTTTATAATTTAGTTTA s canFam1.chr9 7182500 504 + 53642819 GTGAAGTTGAATATTTTCCT----------------ATTTTTTTTCTTTTAGTTGA------CTTATT--TGGCCTTGTCCTACTTACCTGTTAGGACGTTCATGTTTTTTCTTATTGATCTGCCTGA--GAATTAAAA-------ATGTTAATCTGTTGTTAGATTTGC------TACAAATGTTTTCCCCAATCTGTTATTTGACTCTTAATTTTGACCATT-----TTTGGACAT-CAGAAATTTGTTATTTTAG--GAGTC-AAATCTGTTAA-----ACTTTTGTT----TTTCTTATTCTGT----TACTTGGA----------AGACCT------------------------TTTTCTTTAAGAGGCTTAGTAGATG--TTTAAGT---ACATTTTA--TTTTAGTGC------------TTCTTAAAAATGGTTTAGGAAGATATTTATCTCCCAGTTT-----------CTGTTTAGTCATCTCATCATTATTGATTAACC----CATTCTTTCCACAGTG------------------------------------------ATGGGATATTTTTTGTTATGTTA-----AATTAGTTATAATAGAGTCAGAT-tatctcttgtt------cagtgccatactcttttcattatggtagctttataatttggttta s danRer1.chrNA 26765375 671 + 390413307 GTGATGATGAGCATTTTTTTATGTGTCTTTTGGCTGCATAAATGTCTTCTT-TTGAGAAGTGTCTGTTCATGTCCTTTGCCCACTTTTTGATGGAGTTGTTTGTT-TTTTTCTTGTAAATTTGTTTGAGTTCATTGTAGATTCTGGATATTAGCCCTTTGTCAGATGAGTAGGTTGTGAAAATT-TTCTCCCATTTTGTAGGTTGTCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAGTTTAATTAGATC-CCATTTGTCAATTTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCAAGCCTATGTCCTGAAGGGTAATGCCTAGGTTTTCTTCTAGGGTTTT----TATGGTTTTAGGTCTAATGTTTAAGTCTTTAATCTATCTTGAATTAATTTTTGTATAAGGTGTAAGGAAGGGATCCAGTTTCAGCTTTCTCCATATGGCTAGCCAGTTTTCCCAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATCAGATAGTTGTAGATATGTGGCATTAT--------TTCTGAGGGGTCTGTTCTGTTCCATTGGTCTATATCTCTGTTTTGGTACCAGTACCATGCTGTTTTGTTTACTATAGCCTTGTAGTATAGTTTG a score=2852.0 s hg17.chr17_random 1219610 18 + 2618010 ATATTCTCACTAGGCCAG s panTro1.chr19 66909499 18 + 82489036 ATATTCTCACTAGGCCAG s canFam1.chr9 7183004 18 + 53642819 atatgctcattgtgatgg a score=21379.0 s hg17.chr17_random 1219628 248 + 2618010 tttttttaaga-gatggagtctcactctgccacccagggagtacagtggcgtgatcttggctcactgcagcctctaacccctgggttcaa-gtgattctc-ctgcctcaacctccctagtagctggaattacaggtgcatgccacgactcccagctaatttttttggggtggagatggggttatattggtcaggttggtctcgaactcctgacctcaagtgatctgcctgcgttggcctcccaa--------ttttttt s panTro1.chr19 66909517 259 + 82489036 tttttttaagatgatggagtctcgctctgccacccagggagtacagtggcgtgatcttggctcactgcagcctctaacccctgggttcaacgtgattctcgctgcctcaatctccctagtagctggaattacaggtgcatgccacgactcccagctaatttttttggggtggagatggggttatattggtcaggttggtctcgaactcctgacctcaagtgatctgcctgtgttggcctcccaattttttttttttttt a score=14266.0 s hg17.chr17_random 1219876 78 + 2618010 tttttttttttgctattcttattt-tttg--tttccgcataaatattaaacttgttaagtttaataagaaatttcactggg s panTro1.chr19 66909776 78 + 82489036 tttttttttttgctattcttattt-tttg--tttccacgtaaatattaaacttgttaagtttaataagaaatttcactggg s canFam1.chr9 7183022 81 + 53642819 aaattttttatgctatcttcacttatttgctcttccatacaaatactaaacttgttaagtttcagaagaaatttccttggg a score=26665.0 s hg17.chr17_random 1219954 311 + 2618010 gccgggcgtggtggctcacgcctgtaatcccaggactttggggaggctgaggagggtggatcttctgaggtcaggagtttgacaccagcctggccgacatggtgaaaccctgtctctactaataatac-aaaattagttgggcgtggtggcacactggggaggctgcgtcacgagaatcacttgaacccaggaggcagaggttgtagtgagccgagatcatgccactgcactcagcctcagcctgcctgggtgacagagtgaaactgtgtctcaaaaaaaaaaaaaaaaaaaaaaaagacatttaattggga s panTro1.chr19 66909854 305 + 82489036 gccgggcgtggtggctcacgcctgtaatcccaggactttggggaggctgaggagggtagatcttctgaggtcaggagtttgagaccagcctggctgacatggtgaaaccctgtctctactaataatacaaaaattagttgggcgtggtggcacactggggaggctgcgtcacgagaatcacttgaactcaggaggcagaggttgtagttagccgagatcatgccactgcactcagcctca----gcctgagtgacagagtgaaactgtgtctc---aaaaaaaaaaaaaaaaaaaaagacatttaattggga a score=47093.0 s hg17.chr17_random 1220265 262 + 2618010 ttattattagaatt-tccttactttgggaaaaagaggcatctaagtttatttagttttcttacccaggagcatgctaagtttttacatttatttaagctttggctcatattgctcaggatagctttataattttcttcctatgtttgaatttaattt-cagataatttatatttgtctgatttacattgtgttttctAATCCTAGTTATTGCTTGTATTTAGGAATGCAGTTATATGTATTTTTGCTTGATTAGAACAATTTTg s panTro1.chr19 66910159 263 + 82489036 ttattattagaatt-tccttactttgggaaaaagaggcatctaagtttatttagttttcttacccaggagcatgctaagtttttacattcatttaagctttggctcatattgctcaggatagctttataattttcttcctatgtttgaatttaatttccagataatttatatttgtgtgatttacattgtgttttctaatcctagttattgcttgtatttaggaatgcagttatatgtatttttgCTTGATTAGAACAATTTTg s canFam1.chr9 7183104 239 + 53642819 ttgtaattagaattaaccttactttggggaaa--aagcatttaagtgtttttagttctccctcctagaagcacactatgtttttacttttatttaagcttttgtttgta--gttcag----------taatttt----ctatgttgtgatataattc-cagctaatttatatttgtgatattttcattgtattttgtA-----AGTTATTGCTTGTATTCAGGAATGCAGCAGTAGGTATTTTTGCTTGATT-GAGCAATTTTG a score=23410.0 s hg17.chr17_random 1220527 261 + 2618010 gctgggcgtggtggctcatgcctgttatcccagcactttgggaggccaaggtgggaggatcacttgagcccaggagtttgagaccagcctgggcaacatagtgagaccccatctatatatttatttatttatttatttatttatttgttatttttttttgagactgagtttcgctcttgtcgcccaggctggagtgcaatggcgccatcttggctcactgcaacctctgcctcctgggttcaagcgattctccggcctcag s panTro1.chr19 66910422 257 + 82489036 gctgggcgtggtggctcatgcctgttatcccagcactttgggaggccaaggtgggaggatcacttgagcccaggagttcgagaccagcctgggcaacatagtgagacctcatctatatatttatttatttatttatttattta----ttatttttttttgagactgagtttcgctcttgtcgcccaggctggagtgcaatggcgccatcttggctcactgcaacctgtgcttcctgggttcaagcgattctccggcctcag a score=14932.0 s hg17.chr17_random 1220793 160 + 2618010 cgagtagctgggattacaggcatgctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcctgaccttaggtgatccgcctgccttggcctcccaaagtgctgggattacaggcatgaaccactgtgcccagct s panTro1.chr19 66910779 160 + 82489036 cgagtagctgggattacaggcatgctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtcttgaactcctgaccttaggtgatccgcctgccttggcctcccaaagtgctgggattacaggcatgaaccaccgtgcccggct a score=38428.0 s hg17.chr17_random 1220953 268 + 2618010 GATGTTAGTTTTCTAGGTATCAAGTGTTTGG-------TACTTGTTACAGTTGAATGTTAACACTTAAAATTTTTCTTTTCTCTTGGATTCCTCCCC-AACATATAAGTAGTTGAACAAAGTGAGaaattttgtttattttattaaaatttttttaaataCGAGCAGTCTCCTGAACAAGAATAGTTTCAGACAGACTCTCTGTTTTAGAATAGCTTCTGATGGCATTGGCTACCTTTTTTAAAAACCACCTTTGATAT----TGTATTAAAAAGTATCA s panTro1.chr19 66910939 263 + 82489036 GATGCTAGTTTTCTAGGTATCA-GTGTTTGG-------TACTTGTTACAGTTGAATGTTAACACTTAAAATTTTTCTTTTCTCTTGGATTCCTCCGC-AACATATAAGTAGTTGAACAAAGTGAGaaatttt----attttattaaaatttttttaaataCGAGCAGTCTCCTGAACAAGAATAGTTTCAGACAGATTCTCTGTTTTAGAATAGCTTCTGATGGCATTGGCTACCTTTTTTAAAAACCACCTTTGATAT----TGTATTAAAAAGTATCA s canFam1.chr9 7183373 218 + 53642819 GATGCTAGTTTTCCAGGTATCA-GTATTTGGCTTTTTTTTTTTTTTACAGTTAAATGTTTATATTTAAAGAATTTC-TTTCTTTTGGATTTTTCCACTAATGCATAATTAGTTGAACAAAATGAGGAATTTC----ATATTAG--------------------------------------------------------TTTGTTTTAGAATAACTTCTGAAGGCATAAACTACTTTTAAAAAAAACCATATTTGATATATTAAGTATTGACATATATCt a score=655.0 s hg17.chr17_random 1221221 7 + 2618010 AAACCTA s panTro1.chr19 66911202 7 + 82489036 AAACCTA a score=7990.0 s hg17.chr17_random 1221228 71 + 2618010 ATCTTAAGTTTGATTGGCAGTTTGGTTTGGTTTT---------------ATACAAAAATTGATAGCAGACATAAAGTTTAAA--------TTAt---- s panTro1.chr19 66911209 71 + 82489036 ATCTTAAGT----TTGGCAGTTCGGTTTGGTTTT---------------ATACAAAAATTGATAGCAGACATAAAGTTTAAATT----Atttat---- s canFam1.chr9 7183793 94 + 53642819 ATCTTAAGT----TTAGCAGTTTGGTTTCTTACTAAAAATTGACAGAAAAAAAAAAAATTGACAGCCGACATAAAAACAAAACTTAAGTTTTATTTAA a score=27599.0 s hg17.chr17_random 1221299 296 + 2618010 ttatttattttgagacagttttgctcttgttgcccaggctggagtgcagtggcgccatctctgctcaccacaacctccgcctcccgggttcaagtgattctccggcctcagcctcccgagtagctgggattacaggcatgcgccaccatgccagtctaatttttttttgtatttttcatagagacgtggtttttccatgttgaccaggctggtctcgaacttccaacctcaggtgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccactgtgcctggcc s panTro1.chr19 66911280 296 + 82489036 ttatttattttgagacagttttgctcttgttgcccaggctggagtgcagtggcgccatctctgctcaccacaacctccgcctcccgggttcaagtgattctccggcctcagcctcccgagtagctgggattacaggcatgcgccaccatgccaatctaatttttttttgtatttttcgtagagacgtggttttcccatgttgaccaggctggtctcgaacttccaacctcaggtgatccgcctgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcgtctggcc a score=88529.0 s hg17.chr17_random 1221595 519 + 2618010 -taaatttt--aaatttttaaataaaCTG---------------TGATGA----------TTAATTTTTAGGGAGGAATTACCACATAGATGATTGCAATCATGCAATGCTCTTCCcatttcttcccaaaaagtttcctcttacctcttcatagccagttgtcttctttaatacccagaacttgtcaactactgatctgttttctatcactataattttgccttttctaggattttgtgtaaatggaatcataccgtctgcagtcttttgggtgaggcttctt---ttaacataatgcttttgagattcatccatgctgggtatcagtactttgttccttttcattcctgaggaatattgcattgtaca--------tcaatttgtttatctgtttgtaaatat-ccacagacatttgttgtttccagtttttggccattacgaata-----------aatatttgagtacatggctctt----tgtgaacatgtttttcttg---cccttgggtaaatgagtgggattgttgcaccatacaaaaagtatgca-------ttttaactttttaaaaatctgcTg s panTro1.chr19 66911576 520 + 82489036 -taaatttt--aaatttttaaataaaCCG---------------TGATGA----------TTCATTTTTAGGGAGGAATTACCACATAGATGATTGCAATCATGCAATGCTCTTCCcatttcttcccaaaaagtttcctcttacctcttcatagccagctgtcttctttaatacccagaacttgtcaactactgatctgttttctgtcactataattttgccttttctaggattttgtgtaaatggaatcataccgtctgcagtcttttaggtgaggcttctt---ttaacataatgcttttgagattcacccatgctgggtatcagtactttgttccttttcattcctgaggaatattgcattgtaca--------tcaatttgtttatctgtttgtaaatatcccacagacatttgttgtttccagtttttggccattatgaata-----------aacatttgagtacatggctctt----tgtgaacatgtttttcttg---cccttgggtaaatgagtgggattgttgcaccatacaaaaagtatgca-------ttttaactttttaaaaatctgcTg s canFam1.chr9 7183887 563 + 53642819 TTAATTTTTTCAAGTTTTAAGGTAAAATGGTAATAATAAGGTAATAATGAATCTAATACCTTAAATGTGAGGTAGGAATTACTATATCGATGATTGCA------CAAAG----TTTCCTTTTTTcccagaaagtttcttcatgccctttcatagaca---gtctcctcccatctccagtccttggcaaccaccactttactt--tgttactatggttttgccttttctagaattttatgtaaatggaattgtgcgttttgtagtcttctgggccagacttcttctcttagcatagtgcttttgagatctatc----ttgtatttcagttgtttgttcctccttatttctgaggaatgttgcattttgcacatatgccccattttctttatccattcacaaatat-ccacagacatttgttctttctagtttttggcccttacaaataaaactgctgtgaacattcgagtatagacctctctttgtgtgaacatgttttttttatttctcttgggtaaat-aattagattgttggatcatatagtaaatatgtaaatatgtgtttgattttttaaaaatctgcta a score=20951.0 s hg17.chr17_random 1222114 235 + 2618010 ggcagattgcttgagcccaggagtttgagaccagcctgggcaacatggcaaagctccgtctctacaaaaaatacaaaaattggtcaggtgtggtggcctatgcctgtagtaccagctacccaagaagctaatagaggattgactgggcctgggaagttaaggctgcagtgagctatgctcacaccactgcattctagcatgggtgaccctgtctc--aaaaaaaTAATAATAATTTT s panTro1.chr19 66912096 237 + 82489036 ggcagattgcttgagcccaggagtttgagaccagcctgggcaacatggcaaagctctgtctctacaaaaaatacaaaaatcggtcaggtgtggtggcctatgcctgtagtaccagctacccaagaagctgatggaggattgattgggcctgggaagttaaggctgcagtgagctgtgctcacaccactgcattctagcatgggtgaccctgtctcaaaaaaaaaaaaTAATAATTTT a score=76857.0 s hg17.chr17_random 1222349 452 + 2618010 tttttcaaagttgtaccattttgcatttctaccagcattgtatgagtttcagtagttcctcatcctagtcagcacttga------------------tattgtctttgattttagccattctaattggtaggtatagatatttc-tttatactttaatttttacttcattaataacctacagttttaagcatattttaatgcacttatttattgtccatataatctttggtgaatatctaagtcttttgttcatgttttaaaattggattgttttcttattaag-tttgagaattctttatgtattttggatataagccttttatgagataaatactttgcaaatatttcctcctggagtgtagctcccacccggcccccaaaagatgtcccaaagagaagaagttttgaa-tgctgatgaaacctgtttatcaattttttttctttcgtggttcatgttttttgagtcctaa s panTro1.chr19 66912333 451 + 82489036 tttttcaaagttgtaccattttgcatttctaccagcattgtatgagtttcagtagttcctcatcctagtcagcacttga------------------tattgtctttgattttagccattctaattggtaggtatagatatttc-tttatactttaatttttacttcattaataacctacagttttaagcatattttaatgcacttatttattgtccatataatctttggtgaatatctaagtcttttgttcatgttttaaaattggattgttttcttattaag-tttgagaattcttcatgtattctggatataagccttttatgagataaatactttgcaaatatttcctcctggagtgtagctcccactcggcccccaaaagatgtcccaaagagaagaagttttgaa-tgctgatgaaacctgtttatcaa-tttttttctttagtggttcatgttttttgagtcctaa s canFam1.chr9 7184455 453 + 53642819 tttttcaaagttgtaccgttctgcgtttctaccagc-----aagagttccagttgctcccagtcctagctaatacttgaaacttgaacacttgctcttctcatcttttatattagccattctaattggt--gtagagatatttcactgaagctttagttttaattcccttattgacctacagtgataagcatcttttcgtgggcttacttgccatctgtgt-gtctttggtgaatgctgaaatattctgctcataatttgaatt---atttttttattatcaagttttgagatttctttttgtattgtggatataagtcctttatcagatatgtgttttgcaaatattttcttctaatttggggctttc------ctccccagtagtgtttcaaaaagcagaagttttgaatttctatttagcccagttcatcag---tctttcgtttatgattcatactttttatgtcctaA a score=25255.0 s hg17.chr17_random 1222801 320 + 2618010 ctaagtctttttttttttttttttt-------------------tgtgagatggagtctcattcttgtcacccaggcaggagtgcagtggcgcgatcttggctcactacaaggtccacctcccgggttcaagcgattctcgttactcagcctcccaagtagctgggattacaggcgcccgcgaccacgcctagctgatttttttttttttatttattttcagtagagatggggtttccccatgttggccaggctggtcttgaactccctacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtgagccaccgtgcccggc s panTro1.chr19 66912784 320 + 82489036 ctaagTC--------------TTTtgtgtgtgtgtgtgtgtgtgtgtgagatggagtctcattcttgtcacccaggcaggagtgcagtggcgcgatcttggctcactacaacgtccgcctcccgggttcaagcgattctcgttactcagcctcccaagtagctgggattacaggcgcccgcgaccacgcctggctgattttttttttttt-----ttttcagtagagatggggtttccccatgttggccaggctggtctcgaactcccaacctcaggtgatccacccgcctcagcctcccaaagtgctgggaatataggtgtgagccaccgtgcctggc a score=461.0 s hg17.chr17_random 1223125 10 + 2618010 actctttttc s canFam1.chr9 7185100 10 + 53642819 acattttttt a score=4669.0 s hg17.chr17_random 1223135 29 + 2618010 taacccagagttctaaagattctct-ctgt s panTro1.chr19_random 8116332 29 - 57627672 taacccagagttctaaagattttct-ctgt s canFam1.chr9 7185110 30 + 53642819 aaatccacaattctaaaagctttctcctat a score=5046.0 s hg17.chr17_random 1223164 47 + 2618010 gttttcttcagcattatttataattttaactcatccgtttaaactta s panTro1.chr19 66913204 45 + 82489036 gttttcttcagcattatttatcattttaactcatatatttaaac--a s canFam1.chr9 7185140 40 + 53642819 gttttctgtg-------ttatagttttagcttttacatttacatcta a score=25768.0 s hg17.chr17_random 1223211 152 + 2618010 ttttcaagttaattttttaatatgctgtgagaagtaagagtcatggttttttttt-------------catatggatattccatttttgtagcactatttgttgaaaatacttttgtttcctccattgaattgtcgtggcaccttggtagaaaatcagttgacaa s panTro1.chr19 66913249 152 + 82489036 ttttcaagttaattttttaatatgctgtgagaagtaagagtcatggttttttttt-------------catatggatattccatttttgtagcactatttgttgaaaatacttttgtatcctccattgaattgtcatggcaccttggtagaaaatcagttgacaa s canFam1.chr9 7185400 153 + 53642819 TTCTAAagttaattttttaatacagtgtgaaagataaaggtcaatatttttttcttcttcttcttccccatgtggatatctgacttttttagcatcatttgtt-cacatgcttttgtttcttccgttgcattgttttggcaccttggctgaaag----------- a score=26881.0 s hg17.chr17_random 1223363 288 + 2618010 gccaggtgtggtggctcatgcctgttctttgggaggccaaggcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggcgaaaccccgtctctactaaaaatacaaaagttagctgggcatgctggcgggcgcctgtaatcccagctactcaggaggctgaggcaagagaatcccttgaatccaggaggcggaagttggagtgagcccagatggtgccactgcactccagcctgggtgacagaatgagactctgtctcaaaacaaacaaaaaaa s panTro1.chr19 66913401 288 + 82489036 gccaggtgtggtggctcatgcctgttctttgggaggccaaggcaggcagatcacttgaggtcaggagttcgagaccagcctggccaacatggcgaaatcccatctctactaaaaatacaaaagttagctgggcatgctggcgggcgcctgtaatcccagctactcgggaggctgaggcaagagaatcccttgaatccaggaggcggaagtcgcagtgagcccagatggtgccactgcactccagcctgggtgacagaatgagactctgtctcaaaacaaacaaaaaaa a score=60350.0 s hg17.chr17_random 1223651 342 + 2618010 tcagttgacaatatacata----taattctatttctggactgtcttctgttttctttatctatgattctacccctt-taagtttattctttttaacaccgtgctgtcttgattactatagctttaaaataaa---gcagctttcaaaca-------------------------------------------------aattgagtctt-------------------TGATTTAGAATCTTGTAATGCTTTGGAGCCATTGTTTAATTTGTTCAGCCAATAAGTATTTATCA--TTTTTGATATGTGACAGAT----ATTATTTTTATTATGTGGTACCATGAATGGAGATATAAGAAATCAGAAAAAGCCTAGATGGGGTCCTGTAGTTTTCCTTTCAGAATTTCTATTATGAACCTTACAT s panTro1.chr19 66913689 342 + 82489036 tcagttgacaatatacata----taattctatttctggactgtcttctgttttctttatctatgattctacccctt-taagtttattctttttaacaccgtgctgtcttgattactatagctttaaaataaa---gcagctttcaaaca-------------------------------------------------aattgagtctt-------------------TGATTTAGGATCTTGTAATGCTTTGGAGCCATTGTTTAATTTGTTCAGCCAATAAGTATTTATCA--TTTTTGATCTGTGACAGAT----ATTATTTTTATTATGTGGTACCATGAATGGAGATATAAGAAATCAGAAAAAGCCTAGATGGGGTCCTGTAGTTTTCCTTTCAGAATTTCTATTATGAACCTTACAC s canFam1.chr9 7185553 419 + 53642819 tcagttgaaaatacacatatggttagttctatttctggactttgttctg-ttcctttagctataattcgattgtttataagtttatcatttataa-gccacactttcttggtgactatagctttaacataagtcttCTGATTTCAAACAGTGATTAAAAAGCTTTTCATAAACATTTTAATAACAGTTTAATAAGCATAAGTGAGTCTTTAATTTCTGGATCCTGTAATGATTTAGAATCTTGTAATGCTTTGGAGTGATTATTTCATTTATTCAACAAATAAATATTTATCAATTTCTTGACATTTGCCAGACAGTGATTAATTTTATTATATAGTACCATGATTGGAAATATAGGAAATCAGAATAAACCTAGATTGGGGTCTGTATTTTTCTTCTGAAAATTTCTATTACAGACTTTt--- a score=38360.0 s hg17.chr17_random 1223993 215 + 2618010 TTTTAAATTAATTAATCT---------------TTTTCATCTCTTACT-ATGTGATGAAAGAGGATTATGACAACCAGGACTTAACAAAGTTTGCTTGTTTACCAGCTGTCAGTCCCCTCAAATCATTTTTGGAAAAAGGTGGGATATAAAGAATAAACATATCTAAAATGTGACCATAGAAAAGAAAGGAGGTGATTGGTGTGTTAAGTATGGGTTGGATTATGAGTATT s panTro1.chr19 66914031 216 + 82489036 TTTTAAATTAATTAATCT---------------TTTTCATCTCTTACTGATGTGATGAAAGAGGATTATGACAACCAGGACTTAACAAAGTTTGCTTGTTTACCAGCTGTCAGTCCCCTCAAATCATTTTTGGAAAAAGGTGGGATATAAAGAATAAACATATCTAAAACGTGACCATAGAAAAGAAAGGAGGTGATTGGTGTGTTAAGTATGGGTTGGGTTATGAGTATT s canFam1.chr9 7186176 214 + 53642819 TCTACTATTAATGAACCtttaataattttattatttttatCTCTTACT-----GATGAAAGTGGA-TGCAACAGGTATGAATTAATAAGGTTTGC-----------CTGTCAGCCCCCTCAGATCGTTTTTGGGAAAAGGTGGGATAAAAAGAATAAACATATGTAAAATGTGGCAATAGAAAGGAAAGGATATACTGTAATTGTTAAATGTGTGTTGGATTATGGGTATT a score=29157.0 s hg17.chr17_random 1224208 314 + 2618010 TATCGtttttgcttgtattatttttgtgacagggtctctgtcacccaggctgcagtgcaatggcacaatcagagctcactgtgatcttgaactgggctcaagtgatcctcccacctcagccttctgaatagctgggtctacaaacatgcactaccatgctcagctaatttttaaattttttttatttttcgtagagatggggcctcactgtgttgcccaggctggtctcgaactcctggcctcaagtgatcccctgccttggccttccatagtgctgggattataggcctgagacattgctgtgcctggctTGC s panTro1.chr19 66914247 314 + 82489036 TATCGtttttgcttgtattatttttgtgacagggtctctgtcacccaggctgcagtgcagtggcacaatcagagctcactgtgatcttgaactgggctcaagtgatcctcccacctcagccttctgaatagctgggtctacaaacatgcactaccacgctcagctaattttttaattttttttatttttcgtagagatggggcctcactgtgttgcccaggctggtctcgaactcctggcctcaagtgatcccctgccttggccttccatagtgctgggattataggcctgagccattgctgtgcctggccTGC a score=1217.0 s hg17.chr17_random 1224522 14 + 2618010 TTTTGCTTGCCTTA s panTro1.chr19 66914561 14 + 82489036 TTTTGCTTGCCTTA s canFam1.chr9 7186390 9 + 53642819 TTTTGGTCG----- a score=8821.0 s hg17.chr17_random 1224536 70 + 2618010 TTTTATGTGTATATTTTTTCTAAAAGGCAAAAGAAAGGAAGA------AACTTAATTTTAT-TAGAATGTAAGCATA s panTro1.chr19 66914575 66 + 82489036 TTTTATGTGTATATTTTTTCTAAAAGGCAAAAG----GAAGA------AACTTAATTTTAT-TAGAATGTAAGCATA s canFam1.chr9 7186399 65 + 53642819 GATTATGAGCATGTATTTTCTATAAGACAAAG-----GAAGA------AAGTCAATTTCAT-TAAAATCTGAGCAGA s danRer1.chr3 16258942 70 + 31142523 TTTTAT-TTTACAT-TCTTAGGTAATACAAAA-----ACAGATGTTTCGACACAATGTCTTCCACAGTGTGTGTTAA a score=3022.0 s hg17.chr17_random 1224606 15 + 2618010 TATATATTCAAAAAa s panTro1.chr19 66914641 15 + 82489036 TATATATTCAAAAAa s danRer1.chr3 16259012 15 + 31142523 TATATTTTTAAACAA a score=60352.0 s hg17.chr17_random 1224621 653 + 2618010 tatatacacatatatacaaatatatgtgtatacacatacatatttgtatacacatatacaaatatgtatgtgtatatattttttgagatagagccttgctctgttgcccaggctggagtgcagtggcgtgatctcagctcactgcaacctccgtctcctgggttcaagcgattctcctgcctcaccctcctgagtaggtgggattacaggcacccactactacgcccagctaatttttgtatttttagtatacatggggttttaccatgtctgccaggatggtctcgatctcttgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggccTCtttatttttttaaaagagacaaggtcttgctctgtcactcaggctggagtgcagtggcatgatcatagctcactgtagccttgaactcttgggctcaagtagtcctcccacaccttagcctaccaagtagctaggactataggcgcctgccaccatgcccagctatttaagaaaaaacttttttgcacagatagagtttcaccgtgttgcccaggctggtctagaattcctggcctcaggtgatcctcccacctgaggattacaggtgtgatctactgcacctggcc s panTro1.chr19 66914656 653 + 82489036 tatatacacatatatacaaatatatgtgtatacacatacaaatttgtatacacatatacaaatatatatgtgtatatattttttgagatagagccttgctctgttgcccaggctggcgtgcaatggcgtgatctcagctcactgcaacctccgtctcctgggttcaagcgattctcctgcctcaccctcctgagtaggtgggattacaggcacccactactacgcccagctaatttttgtatttttaggatacatggggttttaccgtgtctgccaggatggtctcgatctcttgacctcgtgatccgcccccctcggcctcccaaagtgctgggattacaggtgtgagccactgcacctggccTCtttatttttttaaaagagacaaggtcttgctctgtcactcaggctggagtgcagtggcatgatcatagctcactgtagccttgaactcttgggctcaagtagtcctcccacaccttagcctaccaagtagctaggactacaggcgcctgccaccatgcccagctatttaagaaaaaacttttttgtacagatagagcttcactgtgttgcccaggctggtctagaattcctggcctcaggtgatcctcccacctgaggattacaggtgtgatctactgcacctggcc a score=2987.0 s hg17.chr17_random 1225274 14 + 2618010 AAATTTCACCTTAT s panTro1.chr19 66915309 14 + 82489036 AAATTTCACCTTAT s canFam1.chr9 7281780 14 + 53642819 AAATTTCATCTCCT a score=-372.0 s hg17.chr17_random 1225288 3 + 2618010 ----TTT s panTro1.chr19 66915323 3 + 82489036 ----TTT s mm5.chr11 15138350 3 - 121648857 ----TCT s canFam1.chr9 7281794 7 + 53642819 TTCAATA a score=2366.0 s hg17.chr17_random 1225291 35 + 2618010 GACTTGAGTTTTTTGAGCGGATTGGCAGGGAGCAA- s panTro1.chr19 66915326 35 + 82489036 GACTTGAGTTTTTTGAGCGGATTGGCAGGGAGCAA- s mm5.chr11 15138353 35 - 121648857 GACTCAAATTAGTTTTGTGAATTGGAGGAGAAGAA- s canFam1.chr9 7281801 35 + 53642819 AATGTATGCTTTGTAGGTGGGATGCAAGGGAAAGT- s danRer1.chr3 16259068 36 + 31142523 GTCTTCAATGTTGAAAACAGTTTTGCTGCCAAATAT a score=3531.0 s hg17.chr17_random 1225326 16 + 2618010 ----TTAAGTAATAGGCTAA s panTro1.chr19 66915361 16 + 82489036 ----TTAAGTAATAGGCTAA s mm5.chr11 15138388 14 - 121648857 ------AAGTTAGAGGCTAA s rn3.chr10 14526108 16 - 110733352 ----TTAAATTAAAGGCTGA s canFam1.chr9 7281836 16 + 53642819 ----TTAAATAACAAGTTTA s danRer1.chr3 16259104 15 + 31142523 TTTTGTGGATAGGAG----- a score=171678.0 s hg17.chr17_random 1225342 150 + 2618010 CAGGACCTAATAGTAATA-------GTGTGTTAAAAATTA----------TTTTTTTCAGGAATCATATTGACAGGTCATGAAAATGAGACCAAAAGATCTCTGGAAGCGATTAATGATAAAATTTCATGGAGAAGAAGGCCTTGACTACGGAGGGGTTGCCAGGTA s panTro1.chr19 66915377 150 + 82489036 CAGGACCTAATAGTAATA-------GTGTGTTAAAAATTA----------TTTTTTTCAGGAATCATATTGACAGGTCATGAAAATGAGACCAAAAGATCTCTGGAAGCGATTAATGATAAAATTTCATGGAGAAGAAGGCCTTGACTACGGAGGGGTTGCCAGGTA s mm5.chr11 15138402 146 - 121648857 -AGCACCTAATGATGATA-------GTATATC-AAAATTA------------TTTTTCAGGAATCATATAGACAGGTCATGAAAATGAGGCCAAAAGATCTATGGAAGCGATTAATGATAAAATTTCGTGGAGAAGAAGGTCTTGACTATGGAGGAGTTGCCAGGTA s rn3.chr10 14526124 146 - 110733352 -AGCCCCTAATGATGGTA-------ATATATT-AAAATTA------------TTTTTCAGGAATCATATCGACAAGTCATGAAAATGAGACCAAAGGATCTATGGAAGCGATTAATGATAAAATTTCGAGGAGAAGAAGGCCTTGACTATGGAGGAGTTGCCAGGTA s canFam1.chr9 7281852 147 + 53642819 AAGCACCTAGTAACAATA-------CTGTGTT---AATTT----------TTTTTTTAAGGAATCCTATCGGCAGGTCATGAAAATGAGACCAAAAGATCTGTGGAAGCGATTAATGATAAAATTTCGTGGAGAAGAAGGCCTCGACTATGGAGGGGTTGCCAGGTA s fr1.chrUn 229539294 142 - 349519338 CAATAGCTGATGTGTTTG-------GTGTGTT-GGTATTG-----------------CAGGAATCTTACAGACAGGTGATGAAAATGAGACCTAAGGACTTATGGAAGAGGTTAATGGTGAAGTTCAGGGGAGAGGAGGGACTTGATTATGGAGGAGTGGCCAGGTA s danRer1.chr3 16259119 166 + 31142523 CAGTCCTTGGTAGATGTGGAAATGTGAGTGCT-CTAATTGCTCCTCTGTCTTCTCTGTAGGAGTCTTATAGGCAGATCATGAAGATGAGACCCAAAGACCTGAAGAAGCGGCTGATGGTGAAGTTCAGAGGCGAGGAGGGGCTGGATTACGGAGGAGTTGCTAGGTA a score=0.0 s hg17.chr17_random 1225492 7 + 2618010 AGGACTT a score=1659.0 s hg17.chr17_random 1225492 2 + 2618010 AG s panTro1.chr19 66915527 2 + 82489036 AG s mm5.chr11 15138548 2 - 121648857 AA s rn3.chr10 14526270 2 - 110733352 AA s canFam1.chr9 7281999 2 + 53642819 AA s fr1.chrUn 229539436 2 - 349519338 AG a score=618.0 s hg17.chr17_random 1225494 5 + 2618010 GACTT s panTro1.chr19 66915529 5 + 82489036 GACTT s mm5.chr11 15138550 5 - 121648857 CACAT s rn3.chr10 14526272 5 - 110733352 TTCAT s canFam1.chr9 7282001 5 + 53642819 GATTT a score=2212.0 s hg17.chr17_random 1225499 14 + 2618010 GCTT-GCCAGCTTAT s panTro1.chr19 66915534 15 + 82489036 GCTTTGCCAGCTTAT s mm5.chr11 15138555 14 - 121648857 GGAT-ATCTATTTAT s rn3.chr10 14526277 14 - 110733352 GGAT-GTCTATTTAT s canFam1.chr9 7282006 14 + 53642819 GCTC-ATGAGTAAAT s danRer1.chr3 16259285 14 + 31142523 GCAT-ATGAATCTGT a score=-1576.0 s hg17.chr17_random 1225513 2 + 2618010 --GA s panTro1.chr19 66915549 2 + 82489036 --GA s rn3.chr10 14526291 2 - 110733352 --TA s canFam1.chr9 7282023 2 + 53642819 --GA s danRer1.chr3 16259299 2 + 31142523 TC-- a score=7247.0 s hg17.chr17_random 1225515 223 + 2618010 CATACGC-ATCTTTGTACT-TACCAATTTAAGATATTTCC-TGCGG---TATAACTTTCTCATCGACATTTATTTTTTGGGTATTCTATTCCCTAATGTTTGTATTACTGAGGATATCCTAATAGATATATTCATAATGAGGT-TAGGATAGTACTGCTACTGGA-CAAGTATTTTAGAACTCCCCAATAGATCATCTGAGTCCAATGAG-------------------------ACTGCAGGCCCTGTGTTT-----------------TCT s panTro1.chr19 66915551 223 + 82489036 CATACGC-ATCTTTGTATT-TACCAATTTAAGATACTTCC-TGCGG---TGTAACTTTCTCATTGACATTTATTTTTTGGGTATTCTATTCCCTAATGTTTGTATTACTGAGGATATCCTAATAGATATATTCATAATGAGGT-TAGGGTAGTACTGCTACTGGA-CAAGTATTTTAGAACTCCCCAGTAGATCATCTGAGTCCAATGAG-------------------------ACTGCAGGCCCTGTGTTT-----------------TCT s rn3.chr10 14526698 207 - 110733352 CATATGG-ATCTTTGTATTAGACAAAATTAAAATACACCTATAACG---TGTAACTG--TCATGGA--------TGTGAAGTATAAAACTCCCCACTGTTTGCAAGACAGATGCAGTCCCCGTGGGTTTATTCACCATGAGAT----GACAGTCTCGGAAGCGGAGTTAATACTTAGGG---TCAGGGAAGCCCTGCAGCACTCTGTAGG-------------------------ACTGGCTGGCCTGTGTTC-------------------- s canFam1.chr9 7282029 234 + 53642819 CATATGG-----TTATATT-TATAAGTTTAAGATACTTCC-TCTGG-----TAACCTTCTCACTGATACTTAT-TTTCTAGTGTAACATTCCCTAATTTTTGCGATATAGAGG-TGTCCTAATAGATATGTTCATGGTGCA--------------------TGGA----GTAATAGAGAACTCCCTCATGGATGATAC-AGCCCAGCGAGTCTTCCTCTGAAAACTAGTTGCAGCCCTACCTGGGCTGTGGTGGGTCCCACACACCCTGCTCT s danRer1.chr3 16259301 207 + 31142523 CATACGAAAGGTTCTCATT-AATTAATTT--------CCC-CAGCGCCTCATTATTCCCCCATCTCTTTTCATATGCCAG--ACTTGACTTCATAATTTCAGCAGTTTAGCTG-AATCTCAGCCAGGCTTATCAGCATGCAGAGCATCATGCTCACGATACTGCA-----------GGTGTTCCCCTGTTGAGCACACGGTTTAGACTGA-------------------------ACAGCAGCCAGCAGGCTT-----------------TCT a score=18014.0 s hg17.chr17_random 1225738 125 + 2618010 CCA--TCTCTCCTTCAG--CATGTTATTGCTTCTGCTTTACATTGTCAGGAACAGTTTTGAGATTTAAACG--ATATATGACGAACTGAATACTGGTTCTCTTTGCTTCCATTTGTTATGCCTTTTTTCCT s panTro1.chr19 66915774 126 + 82489036 CCATCTCTCTCCTTCAG--CATGTTATTGCCTCTGCTTTACATTGTCAGGAACAGTTTTGAGATTTAAATG--ATATATGACGAACTGAATACTGGTTCTCTTTGCCTCCA-TTGTTATGCGTTTTTACCT s rn3.chr10 14526905 62 - 110733352 -----TCACATCATCAGCACATCTTATTTCCTCTGT----------------CAGTTCT-----------------------AAACTGAATGCTGCTTCTC-TTGCT------------------------ s canFam1.chr9 7282263 128 + 53642819 CCATCTCTCTCCTTCCG--TATGTTATTCCCTCTGCTTTGCAGTGTTAGCAACCGTCTGGAGAGTTTAATGACATGTATTCTAAACTAAATGCTGTTTTCCTTTACTTTCA-TTGCCGTGCTTTTTAACCT a score=19472.0 s hg17.chr17_random 1225863 55 + 2618010 TGTTAAATGAATGTGTATGCATGC--------ATGTGTG------TATACACATGTACATATCATG-ATG s panTro1.chr19 66915900 55 + 82489036 TGTTAAATGAATGTGTATGCATGC--------ATGTGTG------TATACACATGTACATATCATG-ATG s mm5.chr13 44507902 55 + 116458020 TGTTTACTGAATGTGTCTGTGTGC--------ATGTGTG------TACACACATGTGTATGTCCCT-ATG s rn3.chr10 14526967 56 - 110733352 TGCTAAACAAGCACGTAT-----C--------ATATTTGCTTACTCATACACATGTATGTCTCACA-ATG s canFam1.chr9 7282391 64 + 53642819 TATTAAAGTAACGTTCGTGTGTGCACATAAGTATGTGTG------TGTACATACGTATGTATTATACATG a score=13901.0 s hg17.chr17_random 1225918 50 + 2618010 GTCCTC-AGAATGTTTCAGTACAGAAGGTATAA-----TGCTTCTGCTACATTTGT s panTro1.chr19 66915955 50 + 82489036 GTCCTC-AGAATGTTTCAGTACAGAAGGTATAA-----TGCTTCTGCTACATTTGT s rn3.chr10 14527023 56 - 110733352 GTCCTTAAGAGTATTTTAATAGAGCAGATATTATATGCTGTTTATGCTATGTTCTT s canFam1.chr9 7282455 50 + 53642819 GTCTTT-AAGATGTTTCAATAAGGAAGCTGTAA-----TGTATATGCTACATTCAT a score=2452.0 s hg17.chr17_random 1225968 25 + 2618010 AACTCACAGGTCAAGTCAAATTGAt s panTro1.chr19 66916005 25 + 82489036 AACTCACAGGTCAGGTCAAATTGAt s rn3.chr10 14527079 24 - 110733352 AG-TCATACATTGAATCCAACTTAC a score=29676.0 s hg17.chr17_random 1225993 317 + 2618010 ttctttttcttttctttttttttggagacagggtctccctctgtcacccaggctggagtgtagtggcgcgatctcgggtcactgcaacctccccaagctgggctcaagagatcctcccacctcagcctcctgagcagctgggactacaggtacaagccaccacagccagctaatttttgtaatttttttgtagagatggggtttcgccatgttgcctaggctgatctcgaactcctgagctcaagtagtctgcctgccccggcctcccaaagtgctgggattacaggtgtgagccaccgcacccagccAGTGATTTA s panTro1.chr19 66916030 317 + 82489036 ttctttttcttttctttttttttggagacagggtctccctctgtcacccaggctggagtgtagtggcgcgatctcgggtcactgcaacctccccaagctgggctcaagagatcctcccacctcagcctcctgagcagctgggactacaggtacaagccaccacacccagctaatttttgtattttttttgtagagatagggtttcgccatgttgcccaggctgatctcgaactcctgagctcaagtagtctgcctgccccggcctcccaaagtgctgggattacaggtgtgagccaccgcacccagccAGTGATTTA a score=6276.0 s hg17.chr17_random 1226310 38 + 2618010 TTTCTGATATTATATTTACTATAAGAATTCTTTTCTAA s panTro1.chr19 66916347 38 + 82489036 TTTCTGATATTATATTTACTATAAGAATTCTTTTCTAA s rn3.chr10 14527218 37 - 110733352 TTTTTGATGGCATGTGTGCTGTCAGAATTTTTTTC-AG a score=40648.0 s hg17.chr17_random 1226348 205 + 2618010 ATATGAAAATTAGTTTTATATAAATGTAGGATAAACACTGTAGC-TCTCTACTGAAATGTTTTAAGGATCATT---GTAATTCTGCTTTCCCTAATCTTAAATCCAACCAAAATTAAA-TTATGTTTTCAATAATTCCCATTAATTATTATTTAGCATTACATGTGTGT-ACTTGTAGACTTATTTTCATTCTGTT-----ATCTTTTAAACCTAT s panTro1.chr19 66916385 202 + 82489036 ATATGAAAATTAGTTTTATATAAATGTAGGATAAACACTGTAGC-TCTCTACTGAAATGTTTTAAGGATCATT---GTAATTCTGCTTTCCCTAATCTTAAATCCAACCAAAATTAAA-TTATGTTTTCAATAATTCCCATTAATTATTATTTAGCATTAC--GTGTGT-ACTTGTAGACTTATTTTCATTC-GTT-----ATCTTTTAAACCTAT s rn3.chr10 14527255 200 - 110733352 GTAT-AACATTTACTTTACATAAATGCAGGAGAACCA---TAGC-CCTGGGCAAAACTATTGAAAGGACAGCTA-AGTAGTCCTGTTCTCCT--GTTCTAAATCCAACCTAAG-TAAA-CTGTGTTTTCACCAAGTTCTGTAACTCAGGCTTTTACCTAAAA-ATGTGC-ACTTTCTG---TACTTTCTTTG-GTTTATAGTTCTTTCATAACTAT s canFam1.chr9 7282525 207 + 53642819 GTGTGAAAATTTACTTTATGTAGATGTAGCAGAAACATTACAGCTTCTGTACTGAAACGTCCTAAGGACCATCATAATATTTCTGCCATCCCTAATC-TAAATCCAGCCTAAATTAAATTTGTGTTTCCACCAAGTCCCATAAGT-ATTAGTTAGCATTAAC-TTGTTTCACCTGTAGACTTCTTTTTATTC-TGT-----GGCCTTTTTAGCTAT a score=4867.0 s hg17.chr17_random 1226553 24 + 2618010 AGATGGGTGGTTTCTTTAGCATGG s panTro1.chr19 66916587 24 + 82489036 AGATGGGTGGTTTCTTTAGCATGG s canFam1.chr9 7282732 24 + 53642819 AAATGGACAGTTTTTTTAGTTTGG a score=58430.0 s hg17.chr17_random 1226577 633 + 2618010 tttttt-----ttttttttttagtatttattgatcattcttgggtgttttttggagagggggatttggcagggtcataggacaatagtggagggaaggtcagcagataaacaagtgaacaagggtctctggttttcctaggcagaggaccctgcggccttccgcagtgtttgtgtccctgggtacttgagattagggagtggtgatgactcttaacgagcatgctgccttcaagtatctgtttaacaaagcacatcttgcactgcccttaatccatttaacccttagtggacacagcacatgtttcagagagcgcagggttgggggtaaggttatagattaacagcatcccaaggcagaagaatttttcttagtacagaacaaaatggagtctcctatgtctacttctttctacacagacacagtaacaatctgatttctctttcttttccccacatttcccccttttctatttgacaaaaccgccatcctcatcatggcccgttctcaatgggctgttgggtacacctcccagacggggtggcagccgggcagaggggctcctcacttcccagacggggcggccgggcagaggcaccccccacctctcagatggggtggctggccgggcgggggCTG s panTro1.chr19 66916611 638 + 82489036 TTTTttttttgttttttttttagtatttattgatcattcttgggtgttttttggagagggggatttggcagggtcataggacaatagtggagggaaggtcagcagataaacaagtgaacaagggtctctggttttcctaggcagaggaccctgcggccttccgcagtgtttgtgtccctgggtacttgagattagggagtggtgatgactcttaacgagcatgctgccttcaagtatctgtttaacaaagcacatcttgcactgcccttaatccatttaacccttagtggacacagcacatgtttcagagagcacagggttgggggtaaggttatagattaacagcatcccaaggcagaataatttttcttagtacagaacaaaatggagtctcctatgtctacttctttctacacagacacagtaaaaatctgatttctctttcttttccccacatttcctccttttctatttgacaaaaccaccatcctcatcatggcctgttctcaatgggctgttgggtacacctcccagacggggtggcagccgggcagaggggctcctcacttcccagacggggcggctgggcagaggcaccccccacctcccagacggggcggctggccgggcgggggctg a score=37.0 s hg17.chr17_random 1227977 4 + 2618010 atat s canFam1.chr9 46515390 4 - 53642819 ATGG a score=5804.0 s hg17.chr17_random 1227981 29 + 2618010 atataaaGCATCAGTAAACAACTCTAGAg s panTro1.chr19 63531220 29 + 82489036 atattaagcatcagtaaacaaccctagag s canFam1.chr9 46515394 29 - 53642819 GTATTAAGCATCAGTAAATGATTCCATAG a score=11059.0 s hg17.chr17_random 1228010 134 + 2618010 ccaggcaccgtgactcactcctgtgatcccagcttttcgaaaggctgaggcaggaggatcgcttgaggccaggagttcaagaccagccttggcaacatagtgagactctcccgtctctaaaacaacaacaacaa s panTro1.chr19 63531249 131 + 82489036 ccaggcatggtgactcactcctgtgatcccagctttttgagaggttgaggcaggaggattgcttgaggccaggagttcaagaccagccttggcaacatagtgagactctcccatctctaaaacaacaacaa--- a score=-235.0 s hg17.chr17_random 1228144 8 + 2618010 AAGGTTAA- s panTro1.chr19 63531380 8 + 82489036 aaaGTTAA- s canFam1.chr9 46515423 8 - 53642819 -AAGTCTTC a score=726.0 s hg17.chr17_random 1228152 2 + 2618010 TT s panTro1.chr19 63531388 2 + 82489036 TT s rn3.chr10 96337948 2 + 110733352 TT s canFam1.chr9 46515431 2 - 53642819 TC a score=261314.0 s hg17.chr17_random 1228154 527 + 2618010 -AAAAATTAAAAGAAAAGAAAA---------CTCCACAGCCACCTTCTCCAGGAAAATAAGTCCCAAAGCCACT--TGCCACTGATGCAGAGGTGCGCAGAGCCCGAGGAACACGGAGTCATAGCAGCTCTGCAAATTGATTTTATTCCAGGCTAAAAGATGCTATTTCTCAAAAAAAGGAGCTGGGAGCGTCTCTGTTCATGAATTCATTTTTCAGGGGTGGGGTGATTTCAAGAGTCCAGGCTGTTTCCT----GACCATGCACACTGTTCCGGCCTGGAAGCCTCAGACCCCAGCCAGGCT-GACCACGAGCCAGACCCGGAGTAAGCTTCGTCCCATGCTTCCTGTC-GGTCCGGGCAGCCTGAGTTTCCTGGTGACCCTTCCCTGCACCCAGCCAATTCAAAGGTCTGGCAAGGCCTGGTGCCAGCCAAGAAAATCTGAGGCAGCCAGGTTTGTTATTTCAAATCTCTAAACCTTCAGACCTCTGTGCTTGGCTTACATATGTGAAAGTTAA-AACAAGGATGTGTGTCGCAGTGGTGATT s panTro1.chr19 63531390 528 + 82489036 -AAAAATTAAAAGAAAAGAAAA---------CTTCATAGCCGTCTTCTCCAGGAAAACAAGTCCCAAAGCCACT--TGCCACTGATGCAGAGGTGCGCAGAGCCCGAGGAACACGGAACCATAGCAGCTCTGCAAGTTGATTTTATTCCAGGCTAAAAGATGCTACTTCTCAAAGAAAGGAGCTTGGAGCGTCTCTGTTTATGAATTCATTTTTCAGGGGTGGGGTGATTTCAAGAGCCCAGGCTGTTTCCT----GACCATGCACACTGTGCCGGCCTGGAAGCCTCAGGCCCCAGCCAGGCTAGACCACGAGCCAGACCCGGAGTAAGCTTCGTCCCACGCTTCCTGTC-GGTCCAGGCAGCCTGAGTTTCCTGGTGACCCTTCCCTGCACCCAGCTGATTCAAAGGCCTGGCAAGGCCTGGTGCCAGCCAAGAAAATCTGAGGCAGCCAGGTTTGTTATTTCAAATCTCTAAACCTTCAGACCTCTGTGCTTGGCTTACATATGTGAAAGTTAA-AACAAGGATGTGTGTCACGGTGGTGATT s mm5.chr11 106638711 482 + 121648857 -AGAGAGAAAAGGAAAAAGAAA---------CT--ACAGTAGTTTTCTAC------------CCTAAAGCCACCAACACAACTGAGG------------GAACC---AGGACACACAGTCACCGTTACTCTGCAAA-TAAGCTTACTCCAGGCTTTCTGATGCTATTTCTCACAGGAAGGAGCTTGGAGCTATCTCGCTTATGAATTTGTGTTGGAGGGGTGGAGTGA-CTAAGGAGCTCGGGCCGTTTCCTGGCGGACAGAGCACACTGAGCCAGCCTGGAAGCCTCAGGCCCCAGCCTGGCT-GACCGGGAGCCA------GAGTCAGCTTCATCCCACGCTTCCTGTCGGGTCCAAGCAGCCTGAGTTTCCTGGTGACCCTTCCCTGCACCCAGCTGATTCAAAGGCCTGGCAGGACCCGATGCCAACCTGAAAAACCAGAGGCAGCCAGGT---TTAGTTCAGATCTCCAAACCAACAGAC--GAGTACTTGGCTTCTACATGTGAAAGTTAATAGCAAACATGTGTGTGA----------- s rn3.chr10 96337950 485 + 110733352 -AAAAAAAAAAAGAAAAGAAAAAAAAAGGACCT--ACAGTAGTCTTTTACAGGTAGCTAC--CCCAAAGCCACCAACACAACTGTGG------------GAGTCAGAAGGACACACTGTCACTGCTACCCTG----------------CAGGCTTTCGGATGCTATTTCTCTCAGGAAGGAGCTTGGAGCTATCTCGCTTATGAATTTGTGCTTGAGGGGTGGGGTGA-CTAAGGAGGTTGGGCTGTTTCCT----GGCGGTGCACACTGAGCCAGCCGGGAAGCCTCAGGCCCCAGCCTGGCT-GACCAGGAGCCA------GAGTCAGCTTCATCCCACGCTTCCTGTCGGGTCCAAGCAGCCTGAATTTCCTGGTGACCCTTCCCTGCACCCAGCTGATTCAAAGGCCTGGCAGAACCCAATGCCAACCTGAAAAATCAGAGGCAGCCAGGT---TTATTTCAGATCTCCAAACCAACAGAC--AAGCACTTGGCTTCCATGTGTGAACGCTAATGGCAAACATGTGTGTGA----------- s canFam1.chr9 46515433 489 - 53642819 CAGGAAAAAAAAAAAAAAAAAG---------C------------------------------CTCAAAACCACC--TGTCACTGACTTATGTGTATATAGAGCCCAAGGGACACATGGTCATAATTGCTATGCAAGTAGATTTTCTCGCAGGCTATAAGATGATATTTCTCAAAGGAAGGAGCTCAGAGTTTCCTTGTTTATGAATTTATCTTT--------ATTTTA-TTGAAAAGCTTCGGCAGTTTCCT----GACGGTGCACACTGAGCCGGCCTGGAAGCCTCAGGCCCCAGCCGGGTT-GACCACGAGCCAGGCCCAGAGTAAGCTTCGTCCCACGCTTCCTGTCGAGTCC-GGCAGCCTGAGTTTCCTGGTGACCCTTCCCTGCACCCAGCCGATTCAAAGGCCTGGCAAGACCCAGTGCCAGCCAAGAAAATCTGAGGCAGCCAGGTTTGTTATTTCAAATTTCTAACCCTGCAGACCCCTGTATTTGGCTAATAAATATGAAAGTTAA-AACAAGGATGCCTGTGACAGCCACGATT a score=20636.0 s hg17.chr17_random 1228681 107 + 2618010 ATAATTCAAGTAAGCAAAGATCCCTGCATGACCAGCCTTC-GAATGTCAGCCCATGCTGAAGTTAAC--------ACATTTAACTCATAGAACAAAATAGTTAAA----------ATGAGG--Agtgg s panTro1.chr19 63531918 107 + 82489036 ATAATTCAAGTAGGCAAAGATCCCTGCATGACCAGCCTTC-AAATGTCAGCCCATGCTGAAGTTAAC--------ACATTTAACTCATAGAACAAAATAATTAAA----------ATGAGG--Agtgg s mm5.chr11 106639193 118 + 121648857 ------CAAGCAGGGGAAGCCCCTTCAACTTCAATATTTG-GGATGACACTCCAT-TTTAAGTTAACCAGCCAGTATGATCAAAACAAACAAACAAACAAACAAACAACAAAGGCAAGAGC--TGGAA s rn3.chr10 96338435 119 + 110733352 ------CGAGCAGGGAAAGCCCCTTCGACTTCGATACTTC-AGATGACAGTCCGT-TTTAAGTTAATCAGCCAGGGTAATCAAAACAAATAAC-AAACAAACCAACAACAAAGGCAAGCGCCACAGGA s canFam1.chr9 46516364 108 - 53642819 AGAATTCAAGTGGGCAGAAATCCCTATGTGACCAGCCTTCAAAATGTCAGCCCATTTCAAAGTCAGC--------TAATTTAACCAATACAGTAAGATCATAAAA----------ATGATG--AACAG a score=1326.0 s hg17.chr17_random 1228788 3 + 2618010 atg s panTro1.chr19 63532025 3 + 82489036 atg s mm5.chr11 106639311 3 + 121648857 ACG s rn3.chr10 96338554 3 + 110733352 ATG a score=9480.0 s hg17.chr17_random 1228791 16 + 2618010 caaaatggtactgcca s panTro1.chr19 63532028 16 + 82489036 caaaatggtactgcca s mm5.chr11 106639314 16 + 121648857 TAAAATGGAGCAGCCA s rn3.chr10 96338557 16 + 110733352 TAAAATGGAGCTTCCA s canFam1.chr9 46516684 16 - 53642819 taaaatggcacagtca a score=2238.0 s hg17.chr17_random 1228807 4 + 2618010 ttct s panTro1.chr19 63532044 4 + 82489036 ttct s mm5.chr11 106639330 4 + 121648857 TTCT s canFam1.chr9 46516700 4 - 53642819 ttct a score=34904.0 s hg17.chr17_random 1228811 228 + 2618010 agaaaacag-ttggcagtttcttataaagttaaacgtacgcttaccacaagacccagcaatcaccctcc-------------cagagaaatg-aaaatttatgttcatataaaatattgtacacaaataattataacagctttatttgtaatagtcatgtatcaatcaggattctccaaggaaacaggaccaatagaagagagatatatacataataaatcatatatataaatgatatatata s panTro1.chr19 63532048 239 + 82489036 agaaaacag-ttggcagtttcttataaagttaaacgtacacttaccacaagaaccagcaatcaccctcctgggtatttatctcagagaaatg-aaaatttatgttcatataaaatattgtacacaaataattataacagctttatttgtaatagtcGtgtatcagtcaggattctccaaagaaacaggaccaatagaagagagatatatacataataaatc--atatataaatgaaatatata s canFam1.chr9 46516704 203 - 53642819 agaaaacaatttggcagtttcttttacacttagccatacacttactacaagacctagcaatctcactcctcggtattgatcccagaaaaatgaaaaacttgcagttatacaaaatcctgtacaacaatattt---actgctttatttatgatagtcatatattagtcattagtctccagaaaaacagaaccaatag------gatatatata------------------------------- a score=715.0 s hg17.chr17_random 1229039 9 + 2618010 agaagTTAT s panTro1.chr19 63532287 9 + 82489036 agaagCTAT a score=4091.0 s hg17.chr17_random 1229048 28 + 2618010 ATATATATACACAAACACATACATATAT-- s panTro1.chr19 63532296 26 + 82489036 ATATATATGTAC--ACACATACAGATAT-- s mm5.chr13 44519002 28 + 116458020 ATATATATGCAC--ACACATATACATATGT a score=44388.0 s hg17.chr17_random 1229148 487 + 2618010 tttcttcattcacagccccctttatcccccttaagggaataactagtgcaagctgactctaagcacatccagtaatgcacctgctgataagatattgaggcaggctgtaccagcagctcctgggaatgtgctcggtggaaggtatctaaaagcccctgcatttatctcttagtgatagtttaagcccctgcacctggaactgtttatcttttacaactgcttctataaccaattaattttttaactttttgcctgttctgcttctgtaaaactgcttcagttaaactccccctcccctatttagaccatagtataaaagagaatctagccccttcttcggggctgagagaattttgagtgctagctgtctctcagtcgccggctaataaaggactccataatttgtctcaaagtgtggcgtttctctataactcgcttggttacaacaCTATCTCtcagggatctccaaagaaatagaacctatagg s panTro1.chr19_random 57337475 485 - 57627672 TTTcttc-ttc-cagccccctttatcccccttaagggaataactagtgcaagctgactctaagcacatccagtaatgcacctgctgataagatattgaggcaagctgtaccggcagctcctgggaatgtgctcggtggaaggtacctaaaagcccctgcatttatctcttagtgatagtttaagcccctgcacctggaactgtttatcttttacaactgcttctataaccaattaattttttaactttttgcctgttctgcttctgtaaaactgcttcagttaaattccccctcccctatttagaccatagtataaaagagaatctagccccttcttcggggctgagagaattttgagtgctagctgtctctcagtcgccggctaataaagaactccataatttgtctcaaagtgtggcgtttctctataactcacttggttacaacaCTATCTCtcagggatctccaaagaaatagaacctatagg a score=45954.0 s hg17.chr17_random 1229635 647 + 2618010 atatatctatctataA--TAAATCATTgccaggcatggtggctcac----------ccagtactttgggaggccaagtcaggaggatcacttgagcccaggagtttgaggccacctgagcaacatagtgagaccctgtctctacaaaaaaaaaaaattttttttttaattagccaggt-tgagccaggcacggtggctcatgcctgtaatcctagcactttgggtggccaaggtagcagattgctttgagctcaggagatcaagactagcctgggcaacatggtgaaactccatctctacaaaaaacacaaaaattagccaggcacggtgccacatgcctgtggtctcagctactcaggaggctaaggctggagaatttcttgaaccggggaggtgaatgttgcagtgagccaagatcacgccactgcactccagcctgggtggcaaagtgagaccctagctcaaaaaaaagaaat-----tgtccaggtgtgctggcgcacacctgtggtcccagctactcaggagactgaggtgggagcattgcttgagcccaggaggttgaggctgcagtgaggccatgaccacaccattgtactcaagccttggtgacagagcaagaacctgcctcaaaaaaaaaaaaaaaaaGACATAGGGATAAGAAAT s panTro1.chr19 63532701 626 + 82489036 atatat-tatatataaaataaATCATggccaggcacggtggctcacacctgtaaactcaatactttgggaggccgaggcaggaggatcacttgaacccaggagtttgagaccacctgagcaacatagtgagaccccgtctctacaaaaaaca------tttttttaaattagccaggtgtgagccaggcatggtggctcatgcctgtaatcctagcactttagggggctgaggcagcagatcaccttgagctcaggagatcaagaccagcctgggcaacatggtgaaactccatctctacaaaaaatacaaaaattagccaggcatggtggcacatgcgtgtggtcccagctactcaggaggctaaagctggagaatttcttgaactggggaggtggaggttgcagtgagccaagatcaggccactgcactccagcctgagtgacaaagtgagaccctatctcaaaaaaaaaaaaaaaaaatgtccag-------------------------cagctactcaggagactgaggtgggagcattgcttgagcccaggaggttgaggctgcagtgag-ccatgatcacaccattgtactcaagccttggtgacagagcaagaccctgcctcaaaaaaataaa------GACATATGTATAAGAAAT a score=2214.0 s hg17.chr17_random 1230105 25 + 2618010 gtgtgctggcgcacacctgtggtcc s panTro1.chr19_random 57338427 25 - 57627672 gtgtgctggcgcacacctgtggacc a score=31411.0 s hg17.chr17_random 1230282 234 + 2618010 GATATATATTGATCtatataaataaatgatatgtatataataaatc--atatatatataatatatacatttactacaaagaattggctcacgtgattatggaggttgacagatcctaagatgtgcagtcagccaagctgaagaccaaggaggatcgatggtgttgttccagtgccaaggccagcaggctggatacccaggaagaacagatgtttcggttccagtccaaaggcagga s panTro1.chr19 63533327 236 + 82489036 GATATATATTGATCTATATAGATAAATGATATGTATATAATAAATCAtatatatatataatatatacatttattacaaagaattggctcatgtgattatggaggttgacaaatcctaagatgtgcagtcagccaagctgaagaccagggaggatcgacggtggtgttccagtgccaaggccagcaggctggatacccaggaagaacagatgtttcggttccagtccaaaggcagga s canFam1.chr9 46516907 173 - 53642819 gatatgtattgat------------------------------------------------------------tataaagaattgactcacatgattatggaggctgacaagtccccaaatctatagtcca-taggctggagactaaagagaaccaaaattgtaattccagt-ctgagtccaaaatcctgaa-atccagaaaaaggcaatgtttcagtttcaatctaaAGGAAGGA a score=5725.0 s hg17.chr17_random 1230516 34 + 2618010 aaaaaactgttgtctcagctcaaaagcagtcagg s panTro1.chr19 63533563 34 + 82489036 aaaaaactgatgtctcagctcaaaggcagtcagg s canFam1.chr9 46517277 33 - 53642819 AAAAGACTAACATCCCACCTC-AAGGCAATCAAG a score=29789.0 s hg17.chr17_random 1230550 321 + 2618010 caggaggaattctctgttattcaggaaagatagtctatttgttctattcaggccttcaactgattggatgaggcccacccaccttagggagggcagtcggctttattcagtctattgacttagatgttaaactcacccaaaatcaccctcacagaaacacccagaatactgtttgatcaactgtcagggcaccccatagcccagtgaagttgacacataaaattaaccatcacaagccaaaaattggaaacaagccaaatgtccctcaacaagtaaacagataaacacatgatggtctatccattcagtgaagtaactcag s panTro1.chr19 63533597 321 + 82489036 caggaggaattctctgttgttcaggaaagatagtctatttattctattcaggccttcaactgattggatgaggcccacccatcttagggagggcagtcggctttattcagtctgttgacttagatgttaaactcacccaaaatcaccctcacagaaacacccagaatactgtttgatcaactgtcagggcaccccatagcccagtgaagttgacacataaaattaaccatcacaagccaaaaattagaaacaagccaaatgtccctcaacaagtaaacagataaacacatgatggtctatccattcagtgaagtaactcag a score=61619.0 s hg17.chr17_random 1230871 689 + 2618010 caataaaaggtaatgagcgattgatccatgcaacaatgtggatgggtctcagggctttttgctgagtggaaaaagccaatctcaaaaggccacacaccg-tctgattccatttatataacactcttttttttttt-ctttttttttgagacagactcttgctctgtcacccaggctggagtgcagtgacatgatctcggctcactgcaacctccatctcctgggttcaagcgattctcctgtctcagccacccgagtagctgggattacaggcgtccaccaccacgcccagttaatttttgtatttttaatagagacggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccacctgcctcagcctcccaaagtgctagtattacaggcgtgagccaatgtgcccagccAACAttttgttttgttttgttatgttatgttttgagatggagtctcgctctgtagcccaggctggagtacagcggcaccatctcagctcactgcaaccactgcctccctggttcaggtgattctagggccccggcctcctgcgtagctggtattacaggtgtgcaccaccatgcccggctaatttttgtatttttagtagagacagggtttcaacacgttagccaggctggtcttgaactcttgacctcaagtgatctgcctgcc s panTro1.chr19_random 57339196 691 - 57627672 caataaaaggtaatgagcaattgatccatgcaacaatgtggatgggtctcagggctttttgctgagtggaaaaagccaatctcgaaaggccacacaccggtctgattccatttatataacactcttttttttttttctttttttttgagacggactcttgctctgtcacccaggctggagtgcagtgacacgatctcggctcactgcaacctccacctcctgggttcaagcaattctcatgcttcagcctcccgagtagctgggattacaggcgtccaccaccacgcccagttaatttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctcgatctcttgacctcatgatccgcctgcctcagcctcccaaagtgctattcttacaggcgtgagccaacgtgcccagccAACAttttgttttgttttgttttgttatgttttgagacggagtctcgctctgtagcccaggctggagtacagcggcacgatctcagctcactgcaacctctgcctccctggttcaggtgattctagggtcccggcctcctgcgtagctggtattacaggtgtgcaccaccatgcccggctaatttttgtatttttagtagagacagggtttcaacacgttagccaggctggtcttgaactcttgacctcaagtgatctgcctgcc a score=3435.0 s hg17.chr17_random 1231560 59 + 2618010 ttggcctcccaaagtgctgggattacaggcatgagccactgtacctggccttatataac s panTro1.chr19 63534307 58 + 82489036 ttggccttccaaagtgcggggatt-cagggatggggcacggttcctggGtttatataac a score=13608.0 s hg17.chr17_random 1231619 94 + 2618010 attcttgaagtgacaaagttatagagttggagaatagatcagcagtt-ccaggggttacagttggaggaagaatgtgact---gaggggtaacaggaa s panTro1.chr19 63534365 93 + 82489036 ttttttgaag-gaaaaaattatagagttggagaatagatcagcagtt-cccggggttatggtaggaggaaggatgcgact---gaggggtaacaggaa s canFam1.chr9 46518969 97 - 53642819 acttttggaatgactgaattatagtgtcggacaatagatcagtggttgccaggggttagggttgg-gagagggtgtggccatgaatgggtaacacaaa a score=21352.0 s hg17.chr17_random 1231713 319 + 2618010 taaattt--------cttctttttttttttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggcacgatctcagctcactgagacctctgtctcctgggctcaagcagtcctcccacaccagcctccctcatagctgggactgcaggaggagtgtgccatctgcacgctcagctaatttttgtattttttgtagagatgaggtttcaccatgttgc-------ccaggctggtctcaaacttctgagctccagtgatccacctgcttcggcatcccaaagtgctaggattacaggcatgaggcaccatgcccagccccaggaa s panTro1.chr19 63534458 326 + 82489036 gaaattttatcttatctt-tttttttttttttgagacagagtctcgctctgtcactcaggctgaagtccagtggcacgatctcagctcactgagaccttcgcttcccaggctctagcagtcctcccacatcagcctccctcacagttgggaatgcaggag---cgtgcca-ctgg--gctcagcta-tttttgtattttttgtagagatggagtttcatcatgttgagatgagatcaggctggtgtcaaacttcggagctcaagtgatccacctgcttcagcctcccagagttctaggattataggcatgaggcaccatgcccagccccaggaa a score=17916.0 s hg17.chr17_random 1232032 90 + 2618010 gaaatttcttagtggtgatggaatacttctgtattcttattgtggggatggttacttgaatctatgcatgtgataaaatttcataaaact s panTro1.chr19 63534784 90 + 82489036 gaaatttcttagtggtgatggaatacttctgtgttcttattgtggggatggtcacttgaatctatgcatgtgataaaatttcataaaact s canFam1.chr9 46519066 89 - 53642819 ggagtttctcagtagtgatggagcagttctgtg-tcggattgtggtgataatcacttgaatctgcacgcatcataaaatttcatagaact a score=10890.0 s hg17.chr17_random 1232122 120 + 2618010 TGTccaggctcagtggcctgtaatcccagcactttaagaggccaaagtgaaaggatcacttgagaccatgagtttgaggttatagtgagctatgattgtgccacttctctccaggctgTC s panTro1.chr19 63534874 120 + 82489036 TGTccaggctcagtggcctgtaatcccagcacgttaagaggccaaagtgaaaggatcacttgagaccatgagtttgaggttacagtgagctatgattgtgccacttctctccagcctgTC a score=10603.0 s hg17.chr17_random 1232242 131 + 2618010 TCAAAAAAATTTTTTT-CATAGAATTATATACCAAAAGAAAAAGATGAGTGTCTCTTTGGTATATATCtattacgttcccaacactgcttttgggactttacacatattacacgcaacattgacagtaactg s panTro1.chr19 63534994 114 + 82489036 TCAAAAAAATTTTTTTTCATAGAATTACATGCCAAAAGAAAAAGATGAGTGTCTCTTTCATGTGTATCtattatgttcccaacactgcttttgggactttacaca------------------cagtaactg s canFam1.chr9 46519188 104 - 53642819 TTAAAAAAATTT------------------------AAAAAAACAACGGTATCTGTTGGCTAAGTAAC----ATGTTCCAAACCAAAGTCTTGGAATTTTATGTACGTTGCACAAGATATTGACAGCAACCT a score=22092.0 s hg17.chr17_random 1232373 310 + 2618010 gccaagtgcggtggctcacacctgtaatccaagcaatttgggaggccaaggcaagcagatcgcttgagtacaggggttcgagagcaaactgggccatagtgagaccttgtttctacagaaaaaaaaa--atatatatatatatatat-atggtgtgtgcctgtagtcccagctactcaggaagctgaggtgggaggattgcttgagcctgggaggtcaaggctgcagtgagccaacattgagtcactgcactctagcctgggcaacagagtaagattctgtctcaaaaaataaaaataaaaacaaaagcaaac s panTro1.chr19 63535108 294 + 82489036 gccgggtgcggtggctcacacctataatccgagcactttgggaggccaaggtaggcggatggcttgagtccaggggttcgagaccagcctgggccatagtgagacctcatttctacaggaaaaaaaataata-------------atgatggtgtgtgcctgtagtctcagctactcgggaagctgaggtgggaggattgcttgagcctgggaggtcaaggctgcagtgagccaacattgcgtcactgcactccagcctgggcgacagagtgagattctgtctcaaaaaataaaaacaaaaacaaa------c a score=329.0 s hg17.chr17_random 1232683 2 + 2618010 ca s panTro1.chr19 63535402 2 + 82489036 ca s mm5.chr11 106639791 2 + 121648857 CG a score=3518.0 s hg17.chr17_random 1232685 12 + 2618010 gacag----tcacctt s panTro1.chr19 63535404 16 + 82489036 gacagacagtcacctt s mm5.chr11 106639793 12 + 121648857 GACAG----TTGTCTT s rn3.chr10 96339254 12 + 110733352 GACAG----TGGCCTT a score=74391.0 s hg17.chr17_random 1232697 301 + 2618010 aggaata-aacactatatccccaacttt-----------------atagtcaaggaaacactgagag--tgtaatcacc---acccagtcacatagccaataaatggcaaaacc-ggatctaaacctagtctacctgactcc-aaggctttggcccttt------cTCATGTTGCCTGCTA--------ACATACACACAAGCTCCAA-GAATGGGGCCTCCATGCTGCCCATGACAGATCTTTCTA-GCCCTGATGTTG---------CCTCGCACCACAGCTGAGTGTCCTGCACTGTGTTTTCTG-CACTCCCTG-------------------------------------GACAAACACAG--AAAGTCCTGCT-CTGTGAAGAGGC s panTro1.chr19 63535420 304 + 82489036 aggaata-aacaccatatcccca-cttt-----------------atagtcaaggaaacactgagagagtgtaatcacc---acccagtcacatagctggtaagcggcaaaaccaggatttaaaccaagtctacctgactcc-aaggctttggcccttt------cTCATGTTGCCTGCTA--------ACATACACACAAGCTCCAAAGAATGGGGCCTCCATCCTGCCCGTGATAAATATTTCTA-GCCCTGATGTTG---------CCTCACACCACAGCAGAGTGTCCTGCACTGTGTTTTCTA-CATTCCCTG-------------------------------------GATAAACACAG--AAAGTCCTGCT-CTGTGAAGAGGC s mm5.chr11 106639805 331 + 121648857 ATGAACACAAAATTCTGTCCCCA-TTTT-----------------ACAGGTAAAGAAATGCTCAGAGGCTATGACAAAC---AGAGATGAGTA-AGCTGGTTAGCGGTAAAGTCAGAACTT----CAAGTCCTTCTGACCCC-AAGATTTTGGCCCTTT------TTCACCTCCCCTTCTACCTCAGCCACCAACAAACACCATCAAA-GAAGGGAAGCCCCATGCTTCCTTCGAGAGATCACCAGAGGCCCTGATGTCA---------TCTCACATCACAGCCGAGCCTCCTCCACTTGTCCTTCTACCATGTCCTGACCCACAC---GCTGCCCAGA----------GTTCAAGATAAACAC----AAAGATCTGCT-CTTGGAAGAGGT s rn3.chr10 96339266 336 + 110733352 GCGAATACACAATTCTGTCCCCA-CTTT-----------------ATAGGCCAAGAAATGCTCAGAGAGTATAACGAAC---AGAGACGGCTA-AGCTGGTAAGC-ATAAAGCCAGAACTT----CAGGTCCTTCCGACCCCTAAGATTTTGGCCCCTT------TTCATCTCACCTTCTACCGCAGCCAC-------CAACGTCGAA-GAGGGGAAGCTCCATTCTTTGTGCTAGAGATCACCAGAGGCCCTGACGTCGTCTACGTCATCTCACATCGCAGCTGAGCCTCTTCCGCTTATCCTTCCACCATATCCTGACCCACACGCAGCTGCCCAGA----------GTCCAAGATAAACAC----AGAGGTCTGCT-CTTGGAAGAGGT s canFam1.chr9 46519500 357 - 53642819 aTaaata-aaaactattgccctc-atttgaaaaaggagccaacagacactcggacagacactcagagagtataatcaactagacacaatcaggtaccgggtaagtggcaaaaccaggactt-----aaccacatctgactcc-aagtcttgtgccccatccctgcctcacgaaacctctTG--------AAACCTAAATAAACTCCAAAGCACGGAGCCTCGGTCACTCACAGCATAGGCCATCCTG-GCCATGATGTCA---------TCTTACGCCACAGCTGGGTGTCTTGCACTTGTCCCTCTCACACTCTCTG---------GACCTCTTTACAGCTGCACGAGGTCCTGAATAAACACAGAAAAGGAGAAGTTGCTGGAGAAAGGC a score=2520.0 s hg17.chr17_random 1232998 13 + 2618010 CATCAAAATTAGC s panTro1.chr19 63535724 13 + 82489036 CATCAAAATTAGC s mm5.chr11 106640136 11 + 121648857 GGT--ACATTAAC s canFam1.chr9 46519857 13 - 53642819 TGTAAAAATTAGC a score=17624.0 s hg17.chr17_random 1233011 106 + 2618010 ACAGAGATGAGGCATTGGAGAGCAAACTCCAGGTCAAGTCCAGAGAGACAGATGGCTCAGCCCAAGGTCAGGGTCCT--------------TTTTATACCACACTTGAATTTAGACGGCA s panTro1.chr19 63535737 106 + 82489036 ACAGAGATGAGGCATTGGAGAGCAAACTCCAGGACAAGTCCAGAGGGACAGATGGCTCAGCCCGAGGTCAGGGTCCT--------------CTTTATACCTCACTTGAATTTAGACGGCA s canFam1.chr9 46519870 120 - 53642819 AGAGAGATGAAGCCATTCATAGGCAACTACAGGAAAAATCCAGACAGGCAGATGGCTCAGCCTGGGGTCAGGGGTCTCAGAGTAAAGGAAGCTATAAACCTTGCTTGAATTTGGTCAGTG a score=24627.0 s hg17.chr17_random 1233117 309 + 2618010 ggccgggtatgatggctcacgcctgtaatcccagcaatttaggaaaccaagacgggtggatcacctgaggttaggaatttgagaccagcctggccaatatggcaaaaccccgtctctaccaaaaaaactagccaaatgtggtggcacgcatctgtagtcccagctactcaggaggttgaggcaggagaatcccttgaacccgggagacggagtttgcagtgagccaagatcgctccattgcaccccaacctgggcgacagagtgagtctctgtctcaagaaaaaaaaaaaaaaaaaaaTTTAGATGGCA s panTro1.chr19 63535843 303 + 82489036 ggctgggcatgatggctcatgcctgtaatcccagcactttgggaaaccaaggcaggtggatcacctgagattaggagttcgagaccagcctgggcaatatggcaaaaccccgtctctacc-aaaaaactagccaggtgtggtggcatgcatctgtagtcccagctactcaggaggctgaggcaggagaatcccttgagccagggagacggagcttgcagtgagccaagatcgctccagtgcaccccagcctgggcaacagagtgagtctctgtctcaag-----aaaaaaaagaagaaTTTAAATGGCA a score=4977.0 s hg17.chr17_random 1233426 25 + 2618010 ACCAACTTCCCAAGGGTGTGTGTCT s panTro1.chr19 63536146 25 + 82489036 ACCAAATTCCCAGGGGTGTGTGTCT s canFam1.chr9 46519990 25 - 53642819 ACTGGCTTTTCAGGGATGTGTGTct a score=-1280.0 s hg17.chr17_random 1233451 3 + 2618010 -CTG-- s panTro1.chr19 63536171 3 + 82489036 -CTG-- s rn3.chr10 96340213 2 + 110733352 -CC--- s canFam1.chr9 46520015 6 - 53642819 cctgca a score=129277.0 s hg17.chr17_random 1233454 429 + 2618010 GGATGCC-TCCCCTGACTCCCTCCAGGCTGAGCTGCGGA---CCCATCATCCACACTCCCACATCAGCAGGATTTCCCTTAATCAAGGAC-------------CTAGTG-----TGTGGCT-CTAGAATCACCAATGTATCATTTGTTGATGCG----------GGAgcctctcacagaacttggcctgggtagaagcgcagtaagcgtttgctgagtgaatgaatGAACTGCAAGAATCTCATGcaagggctgtgggctcaaacactttcagaggccaggcagacaccaccaatgaatgaggttgggggtggtgattcgtggggagtggagaggacaggggtgga-gtggggatatgtgcccgagcc-accg-------gggcagctgccactccgcttgccct-catgctgccaggtgggaatgtgggccatctattaccacatctgatttttcaaaagaagccaaaagc s panTro1.chr19 63536174 429 + 82489036 GGATGCC-TCCCCTGAATCCCTTCAGGCTGAGCTGCAGA---CCCCTCTTCCATGCTCCCACATCAGCAAGATTTACCTTAATCAAGGAC-------------CTAGTG-----TGTGTCT-CTAGAATCACCAATGTATCATTTGTTGATGTG----------GGAgcctctcacagaacttggcctgggtagaagcgcagtaagtgtttgctgagtgaatgaatTTACTGCAAGAATCTCATGcaagggctgtggactcaaacgccttcagaggccaggcagacgccaccaatgaatgaggttgggggtggtgattcgtggggagtggagaggacaggggtgga-gtggggacatgtgcccgagcc-accg-------gggcagctgccactccgcttgccct-catgccgccaggcaggaatgtgggccatctattaccacatctgatttttcaaaagaagccaaaatc s mm5.chr11 106640922 404 + 121648857 AGATGTC-CCTCTTAAAATACTGGAGACAGAGCTTGGGA---CCATTCTTCAACGCGCTCATATTAGCAGACCCTGCTTT-CCCATGGCC-------------TTCACG-----TATAGGT-CTCGGGTCAACTGTAGATGCTAGATTAATGTGGAGTTGATCTGAAGCCTAGAGAAGAACTTGGCAAGAAAAGAGGC----TTCATGTTTATCCAGTGAATAAATATAT-------ATC--------GAGTTGTGGATGTGAACACTTTCAAATGCCAGGCACAAGATAACATTGA--GAAACTGGGGATAAT--TCATTAGGGTGCAGCGCAGACCGGAGCAGA-ATAAGTACGTATGTCATAGCT-AAGG-------GGACAGCCACTGTTCAGCTCTGGCT------------GTGGGAGAGTGGGACACTTATTGCTACATCTGATTTTTCCAGAGAAGCCAAAATC s rn3.chr10 96340215 410 + 110733352 AGAGGTC-CCTCTTAAAGCACTGGAGATGGAGCCCAGGA---GCCTTCTTCAAAACTCTCACATTAGCAGGGCCAACGTT-CCCATGACCTTCACATACAGGTCTAGGGTCCACTGTAGATGCTAGATTAACCTGGA--------GTTGATCT-----------GGGGCCTGGAGAAGAACTTAGCCTGGAAAGAGA-----TTAATGTTTATTGAGCAAATGGATACAC-------ATC--------AAGGTGTGGGTGTACACATTTTACAATGCCAGGCACACAGCAGCAGTGA--GAAACTAGAGACAAT--ATATTAGGGTACGGCGCAGACCAGAGCAGA-ATAACTACATATGGCATAGCT-AAGGCTACATATGGCAGCCACTGTTCAGCTCTGGCT------------GTGGGAGAGCTGGCCACTTACTGCTACATCTGATTTTTCCAGAGAAGCCAAAATC s canFam1.chr9 46520021 428 - 53642819 ggatgcctccccctgactctctccaggctgagctaggggaccccccccttcgatgcacccacatcaacaggatttatctt-atcaggggc-------------tttcca-----ttcagtt-ctagaatccccagtgtctatgctgttgatctt----------ggagccctgcacagaacctggcctgggtaggggc----tccataaatgtagagtgaatgaatgaaCTGCAAGAATCTAACACA-ggatcgtggactcaaacgtcttgcgaggccgggcagaccatacacatggatggggtcggggatgga--aatgtagggaatagcaaggaagagagtgaatgggagcatgtgtaccacatctgaaag-------gggcagccactacccagtcctggtcatttgctgccaggtgggaacgtggaccatctattgccacatctgatttttcaaaagaggccaaaatc a score=13899.0 s hg17.chr17_random 1233883 36 + 2618010 cagtct-tttatgatgagctcctga--ttttttcatgtt s panTro1.chr19 63536603 36 + 82489036 cagtct-tttatgatgagcttctga--ttttttcatgtt s mm5.chr11 106641326 39 + 121648857 CAGACTCTTTATGAGGAGCCCTTGATCTTCTTTCATGTT s canFam1.chr9 46520449 36 - 53642819 caggct-tttatgatgagctcctga--atttttcatgtt a score=146536.0 s hg17.chr17_random 1233919 482 + 2618010 gtggactaa---tttt---aagctttttaaattaagtgagggccaaatgaaacacatatgcttgttgaatactgcccagaggacatggtttggaatttctgCTTTGAAACTTCAGGATGTTCCAGCGTTTCTGATGCAGTGACAGTG-ATTTTCCTGATGACTACGAGACAAAGGTGTCCACAAGCAGGTAAAGGAAAGCCAGTGTCACCAACAGCCATAAGCCAATTCCATGTGGATGGCCTCCTCTGCTGGCATCCCACTGGGAGGGGCTCCAAGAACTGGTAAGAGCTCTGAAGGCAGGGTTGCAGGGAGGGCAGGGAGGAGGGTACAAATGACC-TATGACTGCTGGTTGGCATAG-TATAAGACTCTTGTATAACTTGAATTCTCATGAAACATGCATTTTTGATGGATTATTAGATTATTTTCATCTTTGCACTAGTGGCACAAAGACCAGACAATCCCATGTAATGGATAAAAGA----------------------------------------------TAGTGCCAC s panTro1.chr19 63536639 469 + 82489036 gcggactaa---tttt---aagttttttaaattaagtgagggccaaacgaaacacatatgctagttgaatactgcccagaggacatggtttggaatttctgCTTTGAAACTTCAGGATGTTCCAGCGTTTCTGATGCAGTGACAGTG-ATTTTCCTGATGACTACGAGACAAAGGTGTCCAC-AGCAGGTAAAGGAAAGCCAGTGCCACCAACAGCCATAAGCCAATTCCATGTAGACGGCCTCCTCTGCTGGCATCCCACTGGG----------AGAGCCGGTAAGAACTCTGAAGGCGGGGTTACAGGGAGGACAGGGAGGAGGGTACAGATGACC-TATGACTGCTGGCTGGCATAG-TAC--GACTCTTGTATAACTTGAATTCTCATGAAACCTGCATTTTTGATGGATTATTGGATTATTTTCATCCTTGCACTAGTGGCACAAAGACCGGACAATCCCATGTAATGGATAAAAGA----------------------------------------------TAGTGCCAC s mm5.chr11 106641365 442 + 121648857 GTGAATTAATTTTTTT---AAATTCTTTGAATTAAGTGAGGGTCAAATGAGACACACATGCCGGATGAACGCCACTCAGAGGACAAGGCTTGGAATGTCAGCTCTGAAACTGCAGGATGGCCCAGAGTTTCACATGTGG-AACAGTGCGTTTGGCTCTTACCTGCTGGGCAGAGCCGTCCAC-AGCAAGTGACCAAGACCCAGT-TCTCCAGCAGCCACGAGCCAACTCCATCTGGAT-GCATCCATTGGAGCAATCTTATCCAGTGATGTCCAAAGAGTGGG-----------------GGGTCACTGGCTGGGTTGG---------------------------------TGACATGG-CGT---------------CCAGAA--CTCAGGGAAAATGTATCTCTGGTTGA--ATTATCTGACCCTGGTGCTGGAGCTAGAGGCATGGAGACCAGACAACCCC---TAATGGGGAAAAACAGTCCTTCCAGGACTATTTAAGGAGAC---------------GCCTCATTGTTGC s rn3.chr10 96340818 409 + 110733352 GTGAACTAA---TTTTTAAAAATTCTTTGAATTAAGCGAGGGTCAAATGAAACACACAGGCCGGAAGAATACCACTCAGAGGACAG-----GGAATATCAACTCTGAAACTTCGGAACGGCCCAGAGTTTTGGATGTGG-AGCTGTGAGTTTTGCTCTCACCTGCTAGGCAGAGCAGTCCAC-AGCAAGAGAACGAGACCAATGTTCTCCAGCAGCCCAGAGCCAATTCCATCTAGAT-GCTGCCTTTGGAGGGATCTCATCCAGTGATGTCCAAAGAGCAG------------------GGGTCACTGGCCAGGTTGG----------------------TGACG------TGACTT---------------------CCAGAACTCAGGGGAAACAGGTCTCTTTT-TTAATTATCAGACATCTTTCATGCTGGTGCTAGAGGCATGAAGACCAGACAACCCC---TAATGGGCAAAAAA----------------------------------------------CGGTCCTGC s canFam1.chr9 46520485 490 - 53642819 gtgaactaa---tttt---aaacttttttaattgagtgagagccaaacaaaacacatatgctggttgaccactgcccAGAGGACAT-GTTTGGAACGTCCACTCTAAAACTTCAGGATGTTTCAGAGTTTCTGATGCAG------TG-ATTTTGTTCATGAGTGCTAGGCAAAGAGCTCAAG-AGCAGGCAAAGGAAAGCCAGCGTCACTAACATACAGAAGACATTCCC--TTTGACGGCCTCTTCTATAAGCAAACTACCAGGAGAGACCCAAAGACCAGGCAGGAACTCCTTAG---GGGGTGTTGAGGGGGCAGA--------------TGACCACATGACTGCTAGCTGGTTTGGTTATAGGATTCTTGTATAACTTGAACCCCCATGAAAAATGCATCTTTTTTGAATTATCAGACTATTTTCATCCCAGCGCTAGAGGCACAATGACCAGACAATCTCCTCTAATGGACAAAAGA-------------TGGTCTTGCCAGATCTATGTAAAGAGGGGCCCTCATTGCCAC a score=9612.0 s hg17.chr17_random 1234401 40 + 2618010 TTGCACCAGACAGAGAGAAGCTAAGACAAGACTGGACAAG s panTro1.chr19 63537108 36 + 82489036 TTGCAC----CAGAGGGAAGCTAGGACAAGGCTGGACAAG s mm5.chr11 106641807 40 + 121648857 GTGTGCCAGACTCAAAGAATTGAAGACCAGGCTTAGGTAG s canFam1.chr9 46520975 40 - 53642819 TTGCACAAGACAGAGGGAATTTAAGACAAGACTGGACAGG a score=11333.0 s hg17.chr17_random 1234441 58 + 2618010 GTCCTGGGAAAGAGGCCACAGGTGGCAAATCCACCCCACCTGAAGGACCTCATCTGGG s panTro1.chr19 63537144 58 + 82489036 GTCCTGGGAAAGAGGCCACAGGTGGCAAATCCACCCCACCTGAAGGACCTCATCTGGG s canFam1.chr9 46521015 58 - 53642819 GTCCTGGGGGAGAGGCCATGGGTGGTGAATTAGCCCTGGCCCGAGGACCTAATATGGA a score=3566.0 s hg17.chr17_random 1234499 28 + 2618010 TGCAGACTTCTACCTCCCACCGTTGC-TT s panTro1.chr19 63537202 28 + 82489036 TGCAGACTTCTACCTCCCACCGTTGC-TT s mm5.chr11 106642042 29 + 121648857 TACAAGTTCCCACCTTTCATCGTCCTATC s canFam1.chr9 46521073 27 - 53642819 TGTGAAGTCTCCCCTCCTCCCATCCT-T- a score=88381.0 s hg17.chr17_random 1234527 417 + 2618010 -----CAGTACCGGAGGTCTTTCCTTGTTTTCCTCACCAGACAGTTCTTTTTCTCAAACTAAGGAAACGAGCACACATCTCAGAA--TGGCCCCAGTTCAAAT----------CCATTCGCTGAC--TGTGATGAACAGCT----------TTGGAAGCCCCATTTGTCCATCTTTCCAACATGACTCATATatgttgatatcacacatc-----ccggatgtgataggatgagggcacttcatctcttaggtattcttcccaaaattctgcagtcccagtctaatcatgagaag--accagaa-----------------------------------------------------------------------------actgtcaccagtcag-----------cagagact-aaggagacatggacactcaa-cgcacc----acggtgtcctggattaggtccaggaa--gggaaagaggccattattagta-agataactgctgagacctgaagaaagtgtgta--gtccag-ttgaAAAATCATGG s panTro1.chr19 63537230 427 + 82489036 -----CAATACCGGAGGTCTTTCCTTGTTTTCCTCACCAGACAGTTCTTTTTCTCAAACTAAGGAAATGAGCACACATCTCAGAG--TGGCCCCAGTTCAAATCCTTCCTTTACCATTTGCTGAT--TGTGATGAACAGCT----------TTGGAATCCCCATTTGTCCATCTTTCCAACATGACTCATATatgttgatatcacacatc-----ccggatgtgataggatgagggcacttcatctcttaggtattcttcccaaaattctgcagtcccagtctaatcatgagaag--accagaa-----------------------------------------------------------------------------actgtcaccagtcag-----------cggagact-aaggagacatggacactcaa-cgcaac----acggtgtcctggattaggtccaggaa--gggaaagaggccattattagta-agataactgctgagacctgaagaaagtgttta--gtccag-ttgaAAAATCATGG s mm5.chr11 106642071 404 + 121648857 -----CAACAGTGGGGACCTTTCGGCGCATCCCTCCCTGGCAGGTTATCTGTCCCCAGTTGAAGAAATTGGTGCAGAGCTCAGAG--AGGTCCAGGTTCAAAT-CTAACTCTTCCCTTTGC------TGTGACCTTCAGCT-------GGCTTTGAAATCCCAAGAGTCCTGCCCTCAAGCACAGCTAGTAGACGCGACTGT---ACA-------------GTG--AGGAGGAGGGGGGT---CCTCTCAGTTTTTCTGCCCAAGAATCTATCTCTCTGGTCTCATCATGAGAGGATACCAGAA-----------------------------------------------------------------------CAGAACAGTATCGCTGACT-------------CACAGGCT-GAGGAGATCTAAGCACTCCA-CAAAACAGTGACCATGTCCTGACTCAGATACTGGGATGGGGAAGGAGGACACTG------------------GGGACCTAGGTAGAGTCTGAG--GTGCAG-TTTACACATTGTGG s rn3.chr10 96341627 432 + 110733352 -----CAACAGCAGTGACCTTTCGTCACATCCCTCCCTAGCAGGTTGTCTGTCTCTAACTGAAGAAATTGGTGCAGAGCTCAGAG--TGGCCCAGGTTCAAAT-CTAACTCCTCCCTTTGC------TGTGACCTCAGTCTGGTG-CTGGCTTTGGAATCCCAAGAACCCTGGCATCAAGCACGGATAGTAGATGCTATTGT---GCAATGAGAACGGGGTGGGGAGGGGGTGGGGGGCT---CGTCTCAGTTTTTCTGTCCAAGAATCTGTCTCTCCGGTCTAATCACGAGAGGAGAGCAGAA-----------------------------------------------------------------------------CAGAGAACAGAATAGCATCCCTGACTCACGTGCT-GAAGAGACCTAAGCACTCCA-CGATACAGTGACCCTGTCCTGGCTCAGATACTGGGGT-GGGAAGGAGGACACTG-----------------GGGGGCCTAAGTAGAGTCTGAG--GTGCGG-TTTACACATTGAGG s canFam1.chr9 46521100 520 - 53642819 CACTGGAACGCCAAGGGCCTCTTGTCATCCTCTTCACTGGCCAGTCCTTACTCTCAAACTCAGGAAATCGGCACAATGCTCAGagactggcctagcttctgac-cttccttgaccgtctgctggttgtgtgacttcaggcaagtgacagctttggaaacctggtttctccgcctttagaatgTAACCGACAcacattggcatcatgcacc-----cc----ttcatacgatataatggtt---tccctttggtattcctccccgaaatctatatccccagtctaaacacgagaaaacaccagacaagctcaaattggggagcattatacaaaatacctgaatgtattcttcaaaggtatcaagacaaagaaacacaaggatagactcagaaactgt-----------cacaggttggaggagattggccaactgaattgtagc----atggtatcctggattggttcccggga--tggaaaaaggccagtg---gtaccaacaactggtgagaaccgagtaaaatctgtgtaatttagttTTAAAAATCATGG a score=447.0 s hg17.chr17_random 1234944 4 + 2618010 ATCT s panTro1.chr19 63537657 4 + 82489036 ATCT s canFam1.chr9 46521620 4 - 53642819 GACT a score=20813.0 s hg17.chr17_random 1234948 265 + 2618010 Aggccaggcaaggtggctcacacctgtaatcccagcactctgggaggccaagatgggtgggtcatttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgcctctactaaaaatacaaaagttagctgggcctagtggcacgcacctgtaatccca-ctactcaggaggctgaggcaagcgaatcacttgaacctgggaaacagagg-------------ttgcaatgagccgagatcgtgccactgaagtccagcttgggtgaca s panTro1.chr19 63537661 279 + 82489036 Agaccaggcaaggtggctcacacctgtaatcccagcactttgggaggccgagatgggtgggtcatttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagccagacgtagtggcatgcacatgtaatcccagctactcaggaggctgaggcaggagaattacttgaacctgggagatggaggttggagacggagtttgcagtgagccgagattatgccactgaactccagcctgggggaca a score=14549.0 s hg17.chr17_random 1235213 178 + 2618010 aagcgagactccttctcaaaaaaaaaaaaccaaaaaacaaaaCagcc-gggctcagtggctcacccctgtcattccagcactttggaaggctgaggtgggcagatcactgagggctgagagtttgaaaccag-cctggccaacatggtgaaacctcatctctactaaaaatacaaaaaat s panTro1.chr19_random 57343522 178 - 57627672 aagcgagactccttctcaaaaaaaaaaaaacaaaaaacaaaaCagccggggctcagtggctcacccctgtcattccagcactttggaaggctgaagtgggcagatcactgagggttgagagtttgaaaccagccctggcc-acatggtgaaacctcatctctact-aaaatacaaaaaAT a score=7114.0 s hg17.chr17_random 1235391 132 + 2618010 tagccaggcatggtggcacgcgcctgtaatcccagctacttgggaggctgaggcaagagaataacttgaaccagggaggcagaggtt---acagtgagtggagattgtgccattgcactccagcctgggcgacaa s panTro1.chr19 63538160 131 + 82489036 tacccaagcatggtagcatgtgtctgtagtcctagctacttgggaggctgaggtgggaggattgcttgagcctgggaggtggaggttgccaca---agctgagattgcaccactgtgctccagcccgggtgac-a a score=26691.0 s hg17.chr17_random 1235523 382 + 2618010 gagcgagactccatcttaaaataataataataataa---------acaataaaTAATAAA-------------ATAAAAATGATGGggcagggtacagaggctgacacccataatcccagcactttaggaggctgaagcaggtggatcacctgaggtcaggagttcaagaccagcttggccaacacggtgaaa---------------aaatgcaaaa-ctagccaggcatggtggggtgcacctgtagtcccagctacttgggaggctgaggtgggaggattgcttgagcctgggaggtggagattgccatgagctgagatcgcatcgctgcactccagcctgggtgacagagtgagactccgtctcaaaaaataaaaataaaagttaaataaaaataaaAACAGTTAAGATTGCCaaa s panTro1.chr19 63537940 416 + 82489036 gagtgagactccgtctcaaaataataataataataataataaacaacaataaataataaataataaaataaaaataaaaatTATGGggcagggtgtggaggctcatacccataatcccagcactttaggaggctgagacaggtggatcacctgaggtcagtagttcaagaccagcctggccgacatggtgaaacctcatctctacagaaaatgcaaaaactacccaagcatggtagcatgtgtctgtagtcctagctacttgggaggctgaggtgggaggattgcttgagcctgggaggtggaggttgccacaagctgagattgcaccactgtgctccagcccgggtgacagagtgagactctgtctcaaaaaaaaaaaaaaaaagataaaTAATAAtaaaaatagttaagatggc---- a score=5053.0 s hg17.chr17_random 1235905 41 + 2618010 taaaaatagtta-------aaattttatattatatgtattttaCCACA s panTro1.chr19 63538356 29 + 82489036 -------------------aaattttatgttatatgtattttaccaca s canFam1.chr9 46522323 48 - 53642819 tgaaaatatttaagatggtaaatgttatgttctgggcatcttaccaca a score=23543.0 s hg17.chr17_random 1235946 316 + 2618010 Ctttcttttctctctctctttttttttttt-----aagacagagtctcgctctgttgctcaggctggagtgcaatggtgcaatcttggctcactgcaacctccatctcccaagttcaagcgattctcctgcctcagcctgccgagcggctgggattacaggcacccaccatcatgcccggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacttcaggtgatctgcccaactcggcctcccaaagtgctgggattacaggtgtgagccactgcacccAACTCACA s panTro1.chr19 63538385 320 + 82489036 cttTCttttttttttttttttttttttttttttttgaaacggagtctcgctttgtcacccaggctggagcacaatggggcgatctcagctcactgcaacctccatctcctgagttcaagcaattctcctgcctcggcctgctgagtagctgggattacaggcacccaccatcacactcggctaatttttgtattttgggtagagat-gggtttcaccatattggctaggctggtctcgaactcctgacctcaggtgatccgcccaactcagcctcccaaagtgctgggattacaggtgtgacccactatgcccagccCACA a score=7951.0 s hg17.chr17_random 1236262 58 + 2618010 ATTTCTTAAAATAataaagaaatcaacacagatgtgactgattgtatatgtgcgtgtg s panTro1.chr19 63538705 54 + 82489036 ATTTCTTAAAATAataaagaaacgaatacagatttgactg----tatatgtgcatgtg s canFam1.chr9 46522371 54 - 53642819 attTTTTAAAATAATAAGTAGACG----TAGATGTAACTGGTTGTGTCTGTATGTATG a score=-507.0 s hg17.chr17_random 1236320 2 + 2618010 -ca s panTro1.chr19 63538759 2 + 82489036 -ca s mm5.chr11 106646564 2 + 121648857 -CA s canFam1.chr9 46522429 2 - 53642819 CC- a score=110630.0 s hg17.chr17_random 1236322 285 + 2618010 ----------------------tgtgtgtgtacacatctacattccccagctgtatcc---actgagagggacaaggaacagcctcatcctagtggcaatgagcacatgtagcatccag-atcttgacttctaaataccattttcaaaaag-gagaaccaggatctttgga--gaacagactgattc--cagggctaggac----------------aaaaaacatacggatgcttctataacagcttgtactaaaaagctcaaagaatgatgggtcac--caaaa----aagggcacagctgcgagcttgagtgggttcccactggccaaactggga s panTro1.chr19 63538761 301 + 82489036 ----------------------tgtatgtgtacacatccacattccctagctgtatcc---actgagagggacacggaacagcctcatcctagtagcagtgagcacatgtagcatccag-atcttgacttctaaataccattttcaaaaaaagagaaccaggatcttcaga--gaacagactgattc--cagggctgagacc---aaaaaaaaaaaaaaaaaaca----gatgctcctggaacagcttgtactagaaagctcaaagaatggtgggtcactgcaaaaggaaaagggcacagctgcgagcttgagtgggctcccactggccaaactggga s mm5.chr11 106646566 285 + 121648857 ----------------------TATATGTGCACACCTCTG------TTGGCTCTAACCTAGGCTGCTAAGGACAGGGAGCAG-TTCACCACAGCAGCCATGAGCACATGCAGCGATCAG-AACTTGATTTCCAAATACCAGTTTCACCAAA-CAGAACCAGGGTCATTAGAGTGACCTGGTTGCTTC--CATGGCCAGGAC-----------AGGAAAAAAGACA----GGGGAGCCTGGAACAGTCTGTGTTAGAAAGCTCCAGGAATGATGGATCGTGGCAAAA----TAGGTC-TAGCAACCAGCTTGAACAGGTTTCCACTGGCCAAAACGGGA s rn3.chr10 96344253 287 + 110733352 ----------------------CACATGTGCACACCTCAG------TTGGCTCTAACTTGGGCTGCTAAGGGCAGGGAGCAG-TTCACCCCAGCAGCGGTGAGCACA--CAGTGACCAGAAACCTGACTTCCAAACACTATTTTCACCAAA-CAGAATCAG-------AGA--GAACTGGTCGCTTC--TGTGGCTAGGACAGGGAAAAAAAAAAAAAAAAGACA---AGAGAAACCTGGAACAGTTTGTGTTAGAAAGCTCCAGGAATGATGGATCGTGGCAAAG----TAGACC-CAGCAACCAGCTTGAACAGGTTTCCACTGGCCAAAACGGGA s canFam1.chr9 46522431 304 - 53642819 TGTGGGTGTTCTACtgtggatgtgtatacacacacacctacattcccttgttttctcc---cctgagagcgacgggga--agcctcaccctggtagcaatgagcacacccagcaccaag-atcttgacttctaaacaccatttgcactaaa-atgaaccaggatccttgga--gaaatgactgatttcgcagggctgggac-----------agggaaagtgtga----gatgagcctagaacatcttgtgctagagagctcaaagaatgacagg-cttggca-------caggacatagcaattagcc--actgggctcccactggccaaactcgga a score=-2034.0 s hg17.chr17_random 1236607 2 + 2618010 at- s panTro1.chr19 63539062 1 + 82489036 a-- s mm5.chr11 106646851 1 + 121648857 A-- s rn3.chr10 96344540 2 + 110733352 A-G a score=23702.0 s hg17.chr17_random 1236609 317 + 2618010 tattattattattattattattatttttgagatggagtctcactctgttgcccaggctggagtgcagtggtgcaatctcagctcactgcaacctctgcctcccaggttcaatggattctcctgcctcagcctccagagtagctgggactacaggtgtgtgccaccacacctggctaatttttgtatttttagtagagacggggtctcaccatgttggccacgctggtctcaaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgctgggattacatgcatgagccactgtgcccggcctgggaat s panTro1.chr19 63539063 306 + 82489036 ----------attttttttttt-tttttgagacagagtctcactctgtcacccaggctggagtgcagtggcacgatcttagctcactgcaacctccgcttcccaggttcaagcaattcttgtgcctcagcctcccaagtagctgggactacaggtgtgtgccaccacacctcgttaatttttgtatttttagtagagatggggtctcaccatgttagccaggctggtctcgaactcctgacctcaagtgatccacccgcctcagcctcccaaagtgctgggattacatacatgagccactacacccggactgggaat a score=1638.0 s hg17.chr17_random 1236926 3 + 2618010 aat s panTro1.chr19 63539369 3 + 82489036 aat s mm5.chr11 106646853 3 + 121648857 AAT s rn3.chr10 96344542 3 + 110733352 AAT a score=50326.0 s hg17.chr17_random 1236929 168 + 2618010 ttaattattacagtgaatagtgagagtcat-ggattataacctattgcattcatgagtccatgcagacatagataaatCACTTGCCCAAGATCACAATGGGATAAGATAGCACTGGGG-ACGAGGGATGCTCA------------CTCTCA--TTTTCCTTTAG----CACTTCTTTCCCC--CCAGATA s panTro1.chr19 63539372 168 + 82489036 ttaattattacagtgaatagtgagagtcat-ggattataacctattgcattcacgagtccatgcagacatagataaatCACTTGCCAAAGATCACAATGGGATAAGATAGCACTGGGG-ACGAGGGACGCTCA------------CTCTCA--TTTTCCTTTAG----CACTTCTTTCCCC--CCAGATA s mm5.chr11 106646856 182 + 121648857 TCAATTGCTAAAGTAAACAGTGGGAGTTACAGGGCTGTCGCCCCTGGAATCCACGAGGCCACTCAGAC----TTAAGTCTCCAGTCCGAGAGC---TTGGGGTGAGGTGATACCACAG-ATGAAGGATACTCAGCCCTTGGTCGGCTTTCAAGTCTTCATTTATTGTCCCCCCCCTACCCCTTCCCCATG s rn3.chr10 96344545 178 + 110733352 TCAACTGCTAAAGTAAACAGTGGGAGTTTCAGGGCTGTAGCCCTTGGAATCCACGAGGCTGCTCAGAC----TTAGGTCTCCTGTCCGAGAGC---TTGGGGCGAGGTGGTACCACAG-ATGAAGGATACCCAGCCCTCAGTTGGCTTTCAAGTCTTCATTTATGG--TGCCCCCTTCCCC--ATGTGAC s canFam1.chr9 46522735 163 - 53642819 ctaattatcaaaataactaatgagagtaac-agattacaacccaccgaatccgtgagtgcatgcagaca---tTACATTTCTTG-CCAAGATCAAGGGAAGGGAAGGTAACACCGGGGAAAGAAGGACGCTCA------------CTCTTA--TTTTCCTTT------TTCCTATTTTTTT--ACAAAAA a score=101528.0 s hg17.chr17_random 1237097 160 + 2618010 CTGTGAGTGGGAAGGACATGACACA--GAGCAAGCTGGAGGCCCAGGAAATTCCTAGAGAGAGTGTCCAGGACATATGGACTTTTGAGATCTGCCC-AGTGTCATTTCCTGTTTCAAATCGTGCTGGGGGAAGGGAAGGTGCAGGAGGTGCAGTGAGGGAGGG s panTro1.chr19 63539540 162 + 82489036 CTGTAAGTGGGAAGGACATGACACATAGAGCAAGCTGGAGGCCCAGGAAATTCCTAGAGAGAGTGTCCAGGACATATGGACTTTTGAGATCTGTCC-AGTGTCATTTCCTGTTTCAAATCATGCTGGGGGAAGGGAAGGTGCAGGAGGTGCAGTGAGGGAGGG s mm5.chr11 106647038 159 + 121648857 TCATGACTGGAAAGGACATGACACATTGAGCAAGCTAGCATCCCA-AAAATTCCTAGACAGACTATCCAGGACATATGGACTTTGGATGCTTGTCC-AGTGTCCTTTCCAGATTCCTGTCACATTGGGGGAAGGG-AGATACAGGGATGCCAATGA-GGACCA s rn3.chr10 96344723 160 + 110733352 ACACGAGTGGAAAGGACATGACGCATGGAGCAAGCTATCGTCCCC-AAAATTCCTAGACAGACCATCCAGGACATATGGACTTTGGACGTTTGTCC-AGTGTCCTTTCCAGCTTCCTGTCACATTGTGGGAAGGAGAGATACAGGGATGCCAGAGA-GAACCA s canFam1.chr9 46522898 151 - 53642819 TGCTGAGTGGAAAGGACATGACACATAGAGCAAACTAGAAGCCCAGAAAATTCCTAGAGAGACTGTCCAAGACATATGGACTTTTGAGATCTGTCC-AGTGTCATTTCCTGTT-----------GGTGGGGAGGGAAGATGCAGGGGGTGCCGTGAGGAATGG s galGal2.chr18 6776895 152 + 8919268 CCATTAGGGGAAAGGAAATGACATATGGAGAGAATTCAAGTCCCTCCTGATTCCTAGAGAGTCTATCCAGAAAGTCAGTA-TTCTGAGCTGCGTCCAAGTGTCATTTCCTGCTCAGAAT-------TGGGAAGGGGAGTT---GGGGGTGGGAAAAGGGATGG a score=138256.0 s hg17.chr17_random 1237257 288 + 2618010 GCTATGGGGGTGAGAGAGGCCGGAGAGCAGGGAGGAGGCTGGTCCATCAGCTGTGGCTGCCAATGA---------TGCCTGGTAGGGGGGG---TACGGGTGAGGGACC-----------------TCCTGGAGAGC-AAGGTG---CCCACATCTGGTTCACATTGAAGGGTAAAAACAAACAGGTTCGTGAGCTGGAAGAAGCCCAGTGGACT----GAGCCAAGCTGTGCTGCTTG----------GACACTAGGGCACAGCATCCTCTCTTCCATGGGTCACTGGGCCTGGGCAGCTCCCAA-GGGCTTGCAGAGGGGACGCAATTGGAATA s panTro1.chr19 63539702 288 + 82489036 GGCGTAGGGGTGAGAGAGGCCGGAGAGCAGGGAGGAGGCTGGTCCATCAGCTGCAGCTGCCAATGA---------TGCCTGCTGGGGGGTG---TATGGGCGAGGGACC-----------------TCCTGGAGAGC-GAGGTG---CCCACATCTGGTTCACATTGAAGGGTAAAAACAAACAGGTTTGTGAGCTGGAAGAAGCCCAATGGACT----GAGCCAAGCCGTGCTGCTTG----------GACACTAGGGCACAGCATCCCCTCTTCCACGGGTCACTGGGCCTGGCCAGCTCCCAA-GGGCTTGCAGAGGGGACGCGGTTGGAATA s mm5.chr11 106647197 296 + 121648857 GCTTTGAGGGAGAGGCAGGCAAAGGGCCAGG--AGAGGCTAGTTGGCCACCACTGCCTCCCAAGAG---------CCTGTGGCCGGTGCTGAGATTTGGGCAGGGGGCC-----------------TCCTGCAGAGC-GAGGTA-CCCCCACATCTGGTTCACATTGCACGGTAAAAACAAACGGGTGTCTTAGCTGGAAAAGGCCCAGTAGACTTAGCTAGCCAAGCCATGTAGCTGG----------GACAGCAGGACACGGCGTCACCTCTTCCATAGGTCACCAGGCCTGGCTGGCTCCCAAGGGGTTTGCAGAGGGAAGGCAACTGGAAAA s rn3.chr10 96344883 300 + 110733352 GCTGTGAGGGCGAGGCAGGCAGAGGGCCAGG--AGAGGCTGGTTGGCCACTGCTGCCTCCGGTGAA---------CCTGTGGCCAGCGCAGAGGGTTGGGC-AGGGGCC-----------------TCCTGCAGAGA-GAGGTCCCCTCCACATCTGGTTCACATTGCAAGGTAAAAACAAACAGGT--CTTAGCTGGAAAAGGTCCAGTAGATT----TAGCCAAGTCATGTAGCTGGGACAGCAGGAGACAGCAGGGCACAGTGTCACCTCTTCCATAGGTCACCAGGCCTGGCTGGCTCCCAAGGGTTTTGCAGAGGGAAGGCAATTGGAAAA s canFam1.chr9 46523049 316 - 53642819 AGTGTGGGGGTGAGGGGAGCAGGAGAGAGGAAAGGAGGCTAGGCCACCGACTGCTGCTTCCAGGGAGCCCCCCCCCATGCTGTGGGAGTGG---GGGTGGCAAGGGGCCCCCAAGAGCAGCCTCTGCCCTGCAGAGTGGAGGTG--CCCCACATCTGGTTCACATTGAAGGGTAAAAGCAAATGGGTTTCTGCACTGGAAGGAACCCAGAAGCCT----CGGCCAAGCCATGCTGCTTG----------GACACCAGGGCACAGCATCACCTCTTCCACGGGTCACCGGGCCTGGCCAGCTCCCAA-GGGCCTGCAGAGAGGACGTGGTTGGAAGG a score=154028.0 s hg17.chr17_random 1237545 446 + 2618010 AGGCTATCTTCTCTGCTTGGAACCACATTATCTGGGTCCAGCTCCTCCTAATGTACAAACCAGCCTCAT---TCTGTGTCCGGAGAGGCTGGTTCTTTGATTTGTAGATGACTCATTTCAGGCCCTTGAACGAGACTGAGACTGCACACGTGCCAAATGTCACCATGTCCACCCACAGGGCTTGTTTGTGCTTCGTGTAATGTCTCCCTTGGCTGGGAAGAGACAATGGcttgctgtaggatctggaacaactttcttaacttctatgagcctcagtttcccctgctataaaatggaaac-aacagttcctccttaa-ggggtcatggttggcctactagagttactgagtatcgggcccagccacagtgccaaaaagctcgcaatcagcgtccaCCATTCCTACCGGTCATTTGGACTCCAGCCTTCTCTCGTCTATTGGGTATTTAAAG s panTro1.chr19 63539990 446 + 82489036 AGGCCATCTTCTCTGCTTGGAACCACATTATCTGGGTCCAGCTCCTCCTAATGTACAAACCGGCCTCAT---CGTGTGTCCGGAGAGGCTGGTTCTTTGATTTGTAGATGACTCCTTTCAGGCCCTTGAACGAGACTGAGACTGCACATGTACCAAATGTCACCATGTCCACCCAGAGGGCTTGTTTGTGCTTCGTGTAATGTCTCCCTTGGCTAGGAAGagacaacggcttgctgtgggatctggagcaactttcttaacttctatgagcctcagtttccccaggtataaaatggaaac-aacagttcctccttaa-ggggtcatggttggcctattagagttactgagtatcgggcccagccacagtgccaaaaagctctcaatcaatgTCCACCATTCCTACTGGTCATTTGGACTCCAGCCTTATCTCTTCTACTGGGTATCTAAAG s mm5.chr11 106647493 407 + 121648857 GAGGCAGCTTTTCTGCGTAGACCAACATTATCTGGACCCAGCTCCACCTAATGTACAAAACAGCTTCCTGTGTCATTGTCCAGAGGGGCTGGTTCTTGGACTTGCGGGTGACTCATTTCA-------GCATGAGGCCGGAGCCG-ACACACAGCCCATCCACCCTTGTCTACCCAGA----------GCACCTCATTTGGTGT-------------GGTGGGGCAGCA--TTGCTGTGCAGTCTTGGGTAGCTGTCTAAATGTCTCTGAGCC-CTTTCCCCCCAGC-----AGTACAGAG-TATGATTGCTTCTTGACTGGGCCGTGG-AAGTCTGTTTGAGTGACTGAGCACAAGGCACAGCTAT-GAATCAGAAAGCTCTCAGGCAGAG-CTGTGGTCCCTACTGGTCACTCGGGAACCAGTCCTATGTCTTCTATTGGCTCTGAAAA- s rn3.chr10 96345308 387 + 110733352 -AGGCCCCTTCTCTGCATAGACTGACACTATCTGGACCCAGCTCTGCCTAATGTACAAAACAGCTTCCTGTGTCATTGTCCAGAGGGGCTGGTTCTTGGACTTGCGGGTGACTCATTTCA-------GCATGAGGC-----CCG-------------TCCACCCTTGTCTACCCAGA----------GCAACTCATTT--AGTCT-----------GGCAGGGCCGCA--TCGCCATGCAGTCTTGGGTCGCTATCTAAGTGTCTCTGAAC--CCTTTCCCCCAGC-----AGTACAGGGTTATGATCCCTTCTTTCCAGGGCCGTGG-AAATCTGTTCGAGTGGCTGAGCACAAGGCACAGCTAT-GAATCAGAAAGCTCTCGGGCA-CATCTGTCGTCCCTGCTGGTCACTCGGGGACCAGTCTCATGTCTTCCATTGGCTCTGAA--- s canFam1.chr9 46523365 439 - 53642819 AGGCCATCTTCTCTGCTTAGAACCACATTATCCGGGCCCAGCTCTGCCTAATGGATAAAACAGCCATAG--------GTCCAGAGGGGCTGGTTCTGTGACGTGCAGATGACTCATGTCAGGCCTG-GAATGAGGCTGGAGCTGCACATACACCAAATGTAACCACCTCCACCCACACGAGTTGTTTGTTCTTCTCACGATACCTCCCTC-GCTAGGAAGGGACAACtgcttgctggggaatcttcagcaactttcttaacttctctgagacccagcctccccaactgtaaaatgggaac-agtgactccttcctcagagggccatcgttagCCAGTTAGAGTCACTGAA-ATGAAACGGAGAGTCAGCCCCAGAAAGTTCTCGatcaatgtctgccattcccattggtcatttggatatcattcttatctcttctattggatagtaaaaa a score=-2217.0 s hg17.chr17_random 1237991 72 + 2618010 TTAgcctgtagccccagctacttgggaggctgaggtaggaggatcacttgaactcgggaggcaga-ggttgca s panTro1.chr19 63540436 73 + 82489036 TTAgcctgtagtcccagctacttgggaggctgaggtaggaggatcacttgaactcaggaggcagagggttgca s mm5.chr11 106647900 34 + 121648857 ------------------TGTTTAAGAAGT--------------------AACACAGAAGACAGA-AGACACC s rn3.chr10 96345695 9 + 110733352 --------------------------------------------------GACGTTTAA-------------- a score=0.0 s hg17.chr17_random 1238063 32 + 2618010 gtgagtcaagatcgtgccactgcactccagcc a score=1110.0 s hg17.chr17_random 1238063 28 + 2618010 gtgagtc--aagatcgtgccact-gca-ctcc s panTro1.chr19 63540509 32 + 82489036 gtgagtcaaaagatcatgtcactggcatctcc a score=391.0 s hg17.chr17_random 1238091 4 + 2618010 agcc s panTro1.chr19 63540541 4 + 82489036 agcc a score=-2919.0 s hg17.chr17_random 1238095 35 + 2618010 taggtga-cagagcgaga-ttttgtctc------------aaaaaGATT s panTro1.chr19 63540545 49 + 82489036 tgggtgaccagaatgagacttctgtctcaaaaaaaaaaaaaaaaaaaGT s rn3.chr10 96345704 7 + 110733352 ------------------------------------------TAAGTAA a score=5568.0 s hg17.chr17_random 1238130 18 + 2618010 TTTAGGAGAAAAAGACTT s panTro1.chr19 63540594 18 + 82489036 TTTAGGAAAAAAAGACTT s rn3.chr10 96345711 18 + 110733352 CACAGGAGGAAAACCTTT s canFam1.chr9 46523804 18 - 53642819 tctaggaggaaaggactt a score=1213.0 s hg17.chr17_random 1238148 6 + 2618010 TCCTCT s panTro1.chr19 63540612 6 + 82489036 TCCTCT s rn3.chr10 96345729 6 + 110733352 TCTTCC a score=14205.0 s hg17.chr17_random 1238154 288 + 2618010 Aggc----caggcgtagtggtttacacctataatcccagcactttgggaggccaaggcaggtggaacacctgaggtcaggagttcaagaccatcctggccaacatggtgaaactt--tgtctgtactaaaaata------------caaaaattaattgggcatggtggtgtgtgcctgtagtcccagctacttaggaggctgaggcaggaggatcacttgaacctgggaggtggaggttacagtgatccaagatcacaccactgcactccagcctgggtgacagagcaagactctgtctaaaaaa s panTro1.chr19 63540618 279 + 82489036 AGGCCAGGcaggcatggtggctcacacctgtaatcccagcactttgggaggctgaggcaggtggatc-------------------------ccctggacaatatagtgagacccaatatctgca--aaaaaaaaaaaaaaaaaattaaaaattagctgagcatggtggcacacacctgtagtcccagctatatgggaggctgaggcaggaggatcacttgagcccaggaggcaaaggttgcagtgagctgtgatggcgccattgcacttcagcctgggtgacagagtgagaccctacctcaaaaa a score=2392.0 s hg17.chr17_random 1238217 25 + 2618010 acctgaggtcaggagttcaagacca s panTro1.chr19_random 57346520 25 - 57627672 acctgaggtcaggagttcaagacca a score=1369.0 s hg17.chr17_random 1238442 17 + 2618010 aaTGTTTTAGGAAAAGA s panTro1.chr19_random 57346746 17 - 57627672 aaaGTTTTAGGAAAAGA a score=-378.0 s hg17.chr17_random 1238459 3 + 2618010 -AGG s panTro1.chr19_random 57346763 3 - 57627672 -AGA s rn3.chr10 96345735 3 + 110733352 AAG- a score=38.0 s hg17.chr17_random 1238462 1 + 2618010 C s panTro1.chr19_random 57346766 1 - 57627672 C s mm5.chr11 106647934 1 + 121648857 T a score=98583.0 s hg17.chr17_random 1238463 385 + 2618010 TTTCCTCTAGGATTTGTATTCCAGCAATTAGTACTATCCCTGGCAATTCGAGGCAAGTG--Gcaggcagaccacagatgacttt-ccagttttgttatttggtggc-tgtgtgacactaaatagcttccttaacctctcttagcctcagctccttcttctgtaaaagcagaattcttgc-cctgcctctcaggtatttgtgagaattcggaggggtaatgcatatCAGAGAAGGGTATGGTTTGTGGTAAATACTATTTTCCTTCCCAGGCCCATATTAAAGGCTCAAAGAATAGTTGTTGGGTGGAGGTGAAACACACCAGGAAAGCACCTTTCAAAACCACCTGGGTACAGCCCTTTCTCTGCTCAGCGTTAGTTCTTTCCTCTTCAG s panTro1.chr19_random 57346767 385 - 57627672 TTTCCTCTAGGATTTGTATTCCAGCAATTAGTACTATCCCTGGCAATTTGAGGCAAGTG--Gcaggcagaccacagatgacttt-ccagttttgttatttggtggc-tgtgtgacactaaatagcttccttaacctctcttagcctcagctccttcttctgtaaaagcagaattcttgc-cctgcctctcatgtatttgtgagaattcggaggggtaatgcatatCAGAGAAGGGTATGGTTTGTGGTAAATACTATTTTCCTTCCCAGGCCCATATTAAAGGCTCAAAGAATAGTTGTTGGGTGGAGGTGAAACACACCAGGAAAGCACCTTTCAAAACCACCTGGGTACAGCCCTTTCTCTGCTCAGCGTTAGTTCTTTCCTCTTCAG s mm5.chr11 106647935 307 + 121648857 TTTCTTCCAAGCTTTCCACCCTGGCCATCAGCACCATCCTTGACAGAGAAGGGCAGGGGATGTGGATAGGTCTTAGCTCACCTTGGCAGTCTTGTTGT---GTGGC-TATAGGAGA--------CGTTGTTAATCT--------CTCGGACCCTGTTTC-------------TTCTTGCTCCTGCTTTCCGGGTGCTCATGGTTAGT-GGAGGGGGTTTGCACAGCAGAGAGTGGCATGGTTTGGAGTGAACACCCTTCTCCTTCCCTGCTTCACATTGAAGACTC----------TGTT---CTAAAAGGAAGCCTGCCAGG-CTGTACCTT--AAAAC--------------------------CAGTGCTGG-------CCCTTCAG s rn3.chr10 96345738 291 + 110733352 -----------CTTTCCACCCTGGCAATCAGCAC-ATCCCTGACAGAATGGGGTAAGGGGTGTGGATAGGTCATAGCTCACCCTGACAGTCTGGCTGA---GTGGT-TGTAGGAGG--------CTCTGTTACTCT--------CTCTGCCCCTG-----------------TTCTTGCTCCTGCTTTCTGAGGGCTCATGGTAAT--GGAGGGGATTCATACATTGGAGGGTGGCATGGTTTGGGGTGAACACTACTCTCCTTCCCAGTTTCACATGCAAGACTT----------TGCT---CTAAAAGGAAGCATGCCGGG-CTGTAACTTT-AAAAC--------------------------CAGTGCTGG-------CACTTCAG s canFam1.chr9 46523822 366 - 53642819 tttcttgcaggcttt-taccccagcaatcagtactgtccctggcagtaccaggcAAGGG--ACCAACAGATGAAAGTCCACTCT-ccagtttggctatctcgtggcttgtgtgaccctaggcagcttcctaaacctctctgagactctatttccctctttatagaggtggaatccttgccctcaccatcagggcacttgtaggaactgagagaggtcatgcttgtcag-----gggatggtttgtggtatatactaTTTTCCTTCCCACACTCGCTTAAGAGTTTCAAAAAACAG-TGTTGGGTCGAAGGGAAGCAT-------------CTTT-AAAACCGTCCAGCTCTGGCCCTTTCTCTGCCCAGCATTAGATCTTTCCTCTTCGA a score=1272.0 s hg17.chr17_random 1238848 3 + 2618010 TAA s panTro1.chr19_random 57347152 3 - 57627672 TAA s mm5.chr11 106648242 3 + 121648857 TAA s rn3.chr10 96346029 3 + 110733352 TGA a score=38.0 s hg17.chr17_random 1238851 1 + 2618010 G s panTro1.chr19_random 57347155 1 - 57627672 G s mm5.chr11 106648245 1 + 121648857 A a score=28687.0 s hg17.chr17_random 1238852 307 + 2618010 TGGCACCATggccaggcacaacagctcacacctgttatcccagcactttgggaggccaaggcagggggatcacttgagcccaggagtttgagaccagcctggacaatatagtgaaacccaatctctacaaaaaaaaatttttaattagctgagcatggtggcacacacctgtagtcccagctatctgggaggctgaggcaggaggatcacttgagcccaggagacagaggtttcagtgagccatgatcgtgccactgcactccagcctgggcgacagagcgagactctgcctcataaataaataaaT s panTro1.chr19_random 57347156 307 - 57627672 TGGCACCATggccaggcacaacagctcacacctgttatcccagcactttgggaggccaaggcagggggatcacttgagcccaggagtttgagaccagcctggacaatataatgaaacccaatctctacaaaaaaaattttttaattagctgagcatggtggcgcacacctgtagtcccagctatctgggaggctgaggcaggaggatcacttgagcccaggagacagaggttgcagtgagccatgatcgtgccactgcactccagcctgggcgacagagcgagactctgcctcataaataaataaaT a score=91.0 s hg17.chr17_random 1239158 1 + 2618010 T s rn3.chr10 96346033 1 + 110733352 T a score=91.0 s hg17.chr17_random 1239158 1 + 2618010 T s canFam1.chr9 46524191 1 - 53642819 T a score=23125.0 s hg17.chr17_random 1239159 115 + 2618010 CGGCAGCAGACAGCAGCGAGC-AGATTCATTCT-GGAGAGAGCCCTGAGGCCCA-CATCCTGGCCAGCACCTTGTAGAGACCTCA-GCTTCCTACCCTGAACTCACCTCTTGCTGTCCC s panTro1.chr19_random 57347463 108 - 57627672 C-------AACAGCAGGGAGC-AGATTCATTCT-GGAGAGAGCCCTGAGGCCCA-CATCCTGGCCAGCACCTTGTAGAGACCTCA-GCTTCCTACCCTGAACTCACCTCTTGCTGTCCC s mm5.chr11 106648246 107 + 121648857 CAGGAGCAGACAGAAGCAAGCTAGACTGACTCTGGGAGGCAGCCCCGCGTTCC----CGCCTGCGATCATCCTTCAGTGGCCTTAGGCTTCCCATCCT--------CTCTCTCTCTCTC s rn3.chr10 96346034 114 + 110733352 CGGGAGCAGACAGAACCAAGCTAGGTTGATGCTGGGAGGCAGACCTGGGTTCC----CACCTGTGGGCACCCTTCGGTGGCCTTA-GGTTCCCCGTCTCCTCTCTCCTTTTGCTATCAT s canFam1.chr9 46524192 104 - 53642819 CACCAGCAGCTGGGAGCGTGC-GGATTCATCGT-GGGGTGAGCTCTGA--CCCAGCGTCCCGGCTGGTACC---------CCCCA-GCTTCCCATCCTGGCCGC-CCTGTTGTCGCCCT a score=19908.0 s hg17.chr17_random 1239274 86 + 2618010 CAAACTTACAGAAAAGGACGTTGCCCCTTTGCCACATGCAACCAGCTTGCTCTCCTCCAGCGCCCTCCAGGGTGTTC-----CTGGGGAGT s panTro1.chr19_random 57347571 86 - 57627672 CAAACTTACAGAAAAGGACGTTGCCCCTTTGCCACATGCAACCAGCTTGCTCTCCTCCAGCGCCCTCCAGGGTGTTC-----CTGGGGAGT s rn3.chr10 96346148 89 + 110733352 CAGATCTACA-ACAACGCCACTACGCTTTGGCTTGATGAAGCCAGCTTGCTCTCCCTGGGC-TACTGTAGAGTATTTGGGGGTTGGGGAGT s canFam1.chr9 46524296 84 - 53642819 CAGATTTAA--GAAAACACACTGATTCTTCACCAGATGCAACCAGCTTGCTCTTCCCTGGCGCGCTCCTGGCTGCTC-----ACTGGGAGC a score=12139.0 s hg17.chr17_random 1239360 38 + 2618010 CCGCTTCCGTGGGCCCACTTGTCCGCTGTCAAAAGCCC s panTro1.chr19_random 57347657 38 - 57627672 CCGCTTCCGTGGGCCCACTTGTCCGCTGTCAAAAGCCC s mm5.chr11 106648559 38 + 121648857 CTGAATCTGTGGATACAACTGTTCTTTATCAAAAGTCA s rn3.chr10 96346247 38 + 110733352 CTGTTTCTGTGGATGCAACCATTTGTGATCAAAAGTCA s canFam1.chr9 46524384 36 - 53642819 CAGCGTCGGTGGCTGTCCTTGTCCATCG--AGGAGCCC a score=-486.0 s hg17.chr17_random 1239398 4 + 2618010 TTGG s panTro1.chr19_random 57347695 4 - 57627672 TTGG s mm5.chr11 106648597 4 + 121648857 AAAA s rn3.chr10 96346285 4 + 110733352 AAAA a score=-540.0 s hg17.chr17_random 1239402 3 + 2618010 CCg-- s panTro1.chr19_random 57347699 3 - 57627672 CCg-- s rn3.chr10 96346289 3 + 110733352 --GCA a score=26568.0 s hg17.chr17_random 1239405 293 + 2618010 gctgggcttgatggctcacacctctaatcccagcactttgggaggtcgaggcgggcggatcacaagg--tcaggggctcaaaaccagcctggccaatatggtgaaaccccgtgtctactaaaaatacaaaaattggccccgtgtggtggtgcatgcctgtagtcccagctacttgagaggctgaggcaggagaattgcctgaacccaggaggttacagtgagccaagatcgtgccactgcactccagcctgggagacagagagagactctgtctc-aaaaaaaaaaaaaaaGCCCT s panTro1.chr19_random 57347702 296 - 57627672 gccaggcttgatggctcacacctgtaatcccagcactttgggaggtcgaggtgggcggatcacaaggtctcaggggctcaaaaccagcctggccaatatggtgaaaccccgtgtctactaaaaatacaaaaattggccccgtgtggtggtgcatgcctgtagtcccagctacttgagaggctgaggcaggagaattgcctgaacccaggaggttacagtgagccaagatcgtgccactgcactccagcctgggagacagagagagactctgtctcaaaaaaaaaaaaaaaaGCCCT a score=-10.0 s hg17.chr17_random 1239698 3 + 2618010 TGT s panTro1.chr19_random 57347998 3 - 57627672 TGT s canFam1.chr9 46524420 3 - 53642819 AGA a score=3452.0 s hg17.chr17_random 1239701 20 + 2618010 CCAGGAGCC---CCTACAAAGCA s panTro1.chr19_random 57348001 20 - 57627672 CCAGGAGCC---CCTACAAAGCA s mm5.chr11 106648601 19 + 121648857 GTAGGAACC---TCT-CATGGAT s canFam1.chr9 46524423 23 - 53642819 CCAGGAGCCGGGTCTGCAGAGCC a score=24972.0 s hg17.chr17_random 1239721 85 + 2618010 -AAAG--------CCCGGGACACCATCCGCCTTGGTCCTTCGGAGAAGGTGAAATTAGAC----AAACTGGTTACaccttggcaaatcatttgacctc s panTro1.chr19_random 57348021 85 - 57627672 -AAAG--------CCCGGGACACCATCCGCCTTGGTCCTTCGGAGAAGGCGAAACTAGACTATTA---TGG-TACACCTTGGCAAATCATTTGACCTC s mm5.chr11 106648620 77 + 121648857 -AAGA--------TCTGGGACACCACTTCCCTGAGTGTT--------GGAAAAGTCAGAT----GAACTGGCTGCGCTTCAGCAAATCATCTAGCTTC s rn3.chr10 96346308 72 + 110733352 -AAGA--------TCCGGGATGCCACTT-CCTGGGTGTT----------CAAAA--ATGT----CATCTGGTTATACTTCAGCCAATCATCTGGCTTC s canFam1.chr9 46524446 94 - 53642819 AAAGAGCCTGGCCTCTGGGACACCACCTCCCTTGGTTCTTTGGAGGAGATGAAGCCAGAG----AAGCTGGCCGCaccttggcaaagcacttgacctc a score=0.0 s hg17.chr17_random 1239806 1 + 2618010 a a score=546.0 s hg17.chr17_random 1239806 1 + 2618010 a s panTro1.chr19_random 57348106 1 - 57627672 A s mm5.chr11 106648697 1 + 121648857 A s rn3.chr10 96346380 1 + 110733352 A a score=765.0 s hg17.chr17_random 1239807 5 + 2618010 ttgtg s mm5.chr11 106648698 5 + 121648857 TGGTG s canFam1.chr9 46524540 5 - 53642819 ctgtg a score=91.0 s hg17.chr17_random 1239807 1 + 2618010 t s rn3.chr10 96346381 1 + 110733352 T a score=1980.0 s hg17.chr17_random 1239812 26 + 2618010 cctcagttttctcatctgtaaaaATG s canFam1.chr9 46524545 26 - 53642819 cctttgttttctcatctgtagaaatg a score=9186.0 s hg17.chr17_random 1239839 138 + 2618010 Cttttttgttttgagatgcagttttgctc---ttgttgcccaggctggagtgcagtggcacgatctcggctcactgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctcccaagtagctgggactacag s panTro1.chr19 63542080 136 + 82489036 ctttttt-ttttgagacacagt----ctcacactgttgcccaggctgaagtgcagtggcacgatcttggctcactgcaacctctgcctcctggattcaagtgattctcatgcttcagcctcctgagtagctagggttacag a score=2074.0 s hg17.chr17_random 1239977 25 + 2618010 gtgcctgccaccacgcctgaatact s panTro1.chr19_random 57348285 25 - 57627672 gcgcctgccaccacgcctgaataat a score=8488.0 s hg17.chr17_random 1240002 129 + 2618010 tttttgtat--------------gggttttactgtgttggtcaggctggtctcaaactcctgacctcaggcgatctgcctgtctcagcctcccaaagtgctgggattacaggcatgagccaccacgcccagccCCTTCATGCA s panTro1.chr19 63542240 143 + 82489036 tttttatattcttagtagagatggggttttgccatgtagaccaggctggtctcgaattcctgacctcaagtggtatacccacctcggcctcccaaagtgctggaattacaggcgtgagccaccacacgcagccCCTTCATGCA a score=77721.0 s hg17.chr17_random 1240131 594 + 2618010 GTTTCTCTCAC-TCCTTTCAGAAGCAAGGAGTCTGATATTCCATCAACATGGAATCCACTGCTATAAACCAGCCTGCAGTCCCAGCTGGTGAACTACAATCCAATCAGG-GATTAAATCTAAATTCCTCCCATCTGATCAGTGGGATCCCTACACATCCAACTCACCCCTTCCTCCTCCAGAAATGTTATCAATCCCCTACATGCCTCCAATAACCTGTTTAACCACCAGCCAAGAGCTTACTACT-------CCCCCTCTCCCAAGCTTAGACACTCAGTGTAAT-TAATGGACACGCAACATTGGGAGCTTTCACATTAAGCTCTTACTTTGAAACTTTGAACATGAAAAAGAGCAGAAAAAAGCAGATCTCCTAATCTCGGTGAAATTGTAGGTAAAACTCCAAGTAGAATACCCAAAATAAATTGTATAAGTAATGATAATATATCATAATGTATTTATCATATGCATATATATTAGATATATTTGGAATATATAGGTATTATGTATTCTAAATTTCCATCatctatctatctatctccatctgtctatctatAGTCACCCCAAAGGCTAAAAGAAAGT---TTTCCACACTCAAGAGTGAAA s panTro1.chr19 63542383 588 + 82489036 GTTTCTCTCAC-TCCTTTCAGAAACAAGGAGTCTGATATTCCATCAACATGGAATCCACTCCTATAAACCAGCCTGCAGTCCCAGCCGGTGAACTACAATCCAATCAGG-GATTAAATCTAAATTCCTCCCATCTGATCACTGGGATCCCTACACATCCAACTGACCCCCTCCTCCTCCAGAAATGTTATCAATCCCCTAAATGCCTCCAATCACCAGTTTAACCACCAGCCAAGAGCTTACTACT-------CCCCCTCTCCCAAGCTTAGACACTCAGTGTAAT-TAATGGACACGCAACATTGGGAGCTTTCACATTAAGCTCTTACTTTGAAACTTTGAATAAGAAAA--AGCTGAAAAAAGCAGATCTCCCAATCTCGGTGAAATTGTAGGTAAAACTCCAAGTAGAATACCCAAAATAAATTGTATAAGTAATGATAATATATCATAATGTATTTATTATATGCATATATATTAGATATATTTAGAATATATAGGTATTAAGTATTCTAAATTTCTATC----ACCTATCTATCTCCATCTGTCTATCTATAGTCACTGCAAAGGCTAAAAGGAAGT---TTTCCACACTCAAGAGTGAAA s canFam1.chr9 46524818 539 - 53642819 GTTTCTCTCGCTTCCTTTCACAAGTGAGGGATCTGGTGGTCCTGCAACATCTAATCCACTCCTATAACCCAGCC----ACCCTGTCCATGGAACCATGATCCAATCGGATAATCAAGTCTTAATTCCTCTCATCTGGTCACCCAGATACCAACACACCTAATTAACTCTCACCTTCTCCCCAAAT-----------------------CAGTCACCCACTTGATTACCAGCCACCATCTAACTCCCATGCCTGCCCCCGCCCCCA--CTTGGGCACT--GCTTAATGTAATCAGCAAGCAAAA-TGAAACCTTTTACTTTAAGCTTTTTTTCTGAAACCTTGAACCAAAAAAAGAGTAG-AAAAAGTAGCCTTCTCCACCTCTGTGAAATCCTAAGTAA-------------------AAAAAAAATGTGATTTGTAATTATAATGTGTTATGTAGTATATAATACA-ATAACTGTATTATATATA---ACAAGATA-----ATCATATAAATT--ATTTCtgt-----gtgtgtgtgtgtgtgtgtgtgtgtgtgtACATGCAACCAGGGCTATGAGAATGCTTATTATCACACTCAAGAGTGAAA a score=26561.0 s hg17.chr17_random 1240725 324 + 2618010 TGGggctgggctcagtggctcacgcctgtaatcccaacactttgggaggctgaggcaggaggattgcttgaggccagaagttcaagaccaagaccagcctgggcaacataatgagaccctgtctctacaaaaaaatataaaaattagccagctatggtggtgcacacctgtagtcccagctactcggtaggctgaggtgggaggattgctaagggcaggaggtggaggctgtattaaaccatgattgctccactgcactccagtctgggtaacgaactgagaccctgtctcaaaaaaaaaaaaaaaaagaaagaaaaagaaAGA s panTro1.chr19 63542971 315 + 82489036 TGGggctgggctcagtggctcatgcctgtaatcccaacactttgggaggctgaggcaggaggattgcttgaggccagaagttcaaaaccaagaccagcctggacgacataatgagacactgtctctac-aaaaaatataaaaattagccagctatggtggtgcacacctgcagtcccagctacttgggaggctgaggtgggaggattgctgaggacaggaggtggaggctgtagtaaaccatgattgctccactgcactccagcctgggtaacaaactgagaccttgtctcaaaaaaaaaaaaaaaaa-----aaaaaG---GA a score=41327.0 s hg17.chr17_random 1241049 235 + 2618010 GAGAGAGAGTGAAATGGAACAAATTATACATCCTTTGCATGACAAGAAAGAGGTAGAAGAATAACATTGTGGAGGGCC-TGGTTTCTCTGAAGGAGCTGTTGAAATCTGCTCTATGATCAGAAGGGG----ACATGATTGTAGGTGGAGGCTGGAAAAAGGCTGTTTGAGCAACTGTTTAGA---TTTTGGGTTAAACCATTTGGCACAGCTTGAAAAATATTATGCTCTCAAAAAAAATCTA s panTro1.chr19 63543286 234 + 82489036 GAGAGAGAGTGAAATGGAACAAATTATACATCCTTCGCATGACAAGAAAGAGCTAGAAGAATAACATTGTGGAGGGCC-TGGTTTCTCTGAAGGAGCTGTTGAAATCTGCTCTATGATCAGAAGGGG----ACATGATTGTAGGTGGAGGCTGGAAAAAGGCTGTTTAAGCAACTGTTTAGA---TTTTGGGTTAAACCATTTTGCGCAGCTTGAAAAATAGTATGCTCTC-AAAAAAatcta s canFam1.chr9 46525873 233 - 53642819 TAAAAAGAGTGAAATGGGACAAATTATACATCCTTTGCATGACAAGAA--AGCTAGAAGAATAAC--TGTGGAAGGTCATGACTTTTCTGAAGTAGCTCTTGAAAAGTGCTTCAGGACCAGGAAGGGATGTATGTGATTGGAGGTGAGGACTGGAGACAGGCTCTTTGAGTAGCTATTCAGAGATTTGAAGGTTGAAGCACCTTGCACGGTCTTAAAAATATTGCA------aaaacaataca a score=867.0 s hg17.chr17_random 1241284 21 + 2618010 TTTATCCAAGatccatctatc s panTro1.chr19 63543520 17 + 82489036 tttatccaa----cagctatc a score=91700.0 s hg17.chr17_random 1241305 561 + 2618010 ta-tctatcatctatctatctatctatctatctGAAATGAAATTAGTTGCCC---CCTTAAACTCCTGCTTTGTAaactaacactgactgagagcttacttgttgagctgcgtattcaaatcaccttt--aaagcactggtaggagttagatactagttttatcctcattttgctgagttgaaaagtgaggcacagagcagttaagcaacttgctggacgtcacacagctattaggtgtcagagctggattg-aaattcaaatct----gattccagagccaatgctatttgccactaagctctactgCCTCCCTGTGGCGG-TTTTCCAGTCAGGAGGGAGTCTTCAGCTTT-CACAAATACTATACCTCCCTCGCCCACAACACACAGAACTCAGTCTCCCCC-TGTTGCTTTTCATAGCAAACCCTATGCCCTGTGTTCATATTTTT-GACATGCATAAAATCTTGGCACACCATGAGAAAACAAATACTTTGTTGATGTGTGTGTGTGTGTGAACCAATAACTTCCACTTTCTGTCTTTCTAAACTATTAGAAGGAAAAACATTTGTTCTCA s panTro1.chr19 63543537 554 + 82489036 t--------atctatctatttatctatctatctGAAATGAAATTAGTTGCCC---CTTTCAACTCCTGCTTTGTAAAATAACACTGACTGAGAGCTTACTTGTTGAGCTGGgtattcaaatcactttt--aaagcacctctaggagttagacactagttttatcttcattttgctgagttggaaagtgaggcacagagcagttaagcaacttgctggaggtcacacagctattaggtgtcagagctggattg-aaattcaaatct----gattccagagccaacgctatttgccactaagctctactgCCTCCCTGTGGCGG-TTTTCCAGTCAGAAGGGAGTCTTCAGCTTT-CACAAATACTATACCTCCCTCGCCCACAACACACGGAACTCAGTCTCCCCC-TGTTGCTTTTCATAGCAAATCCTATGCCCTCTGTTCATGTTTTT-GACATGCATAAAATCTTGGCCCACCATGAGAAAAAAAATACTTTGTTGATGTGTGTGTTTGTTTTAACCAGTAACTTCCACTTTCTGTCTTTCTAAACCATTAGAATGAAAAACATTTGTTCTCA s canFam1.chr9 46526141 537 - 53642819 -aaccaaaaACCCCTCTATATATCCATCTATCTGAATT----TTTTTTGCCCCTGCCTTAAACTCCCGCTTTTTAA----------ACTGAGAGCTTACTTGTTGAGCTGTttagctcattcacccttaaaaaacatccttaggagttggatagtaggttcatcc-ctttctgctgagttagaaagtgaggcacagagcagttaagtaactttcgggaggtcacacagctattaagtactggaatcagatttcaaactcaaatccattggatttcggagcccacacttttaaccactaaactctactgCCTCCCTGTGGTGGTTTTTCCAGTTGGGAGGAAGCCAACAGCTTTACACAA-----ACACCTCCCCTCCCGGTAACACACAGAACTCAGTATCTCCCGTGCTGTTTTACATAGCAAACCCCACACCCTGTATTCACATTTTTAAACATGC--AAAATATGAACCCACCATAAGAAGAAAAATACATT---------------TTTTTCAACCAAGAACTTGTACTTTCTCTTATTTTAGATCATTATCAGG-AAAGCATTTTTCAAAA a score=21274.0 s hg17.chr17_random 1241866 318 + 2618010 CCCTTCCCAttttttgttcgttt-tgtttgttttttgagacggagtttctctcttgttgcccaggctggagtgtaatggcatggtctcagctcactgcaacctccgcctcgcaggttcaagtgattctcctgcctcagcctcccaagtagctgggattacag----gcccctgccaccatgtctggctactttttgtatttttagtagagatagggtttcgccatgttgatcaggctggtcacgaactcctgacctcaggtgatctgcccacctcagccttccaaagtgctgggattacaggcgtgagccaccgcacccggtc s panTro1.chr19 63544091 315 + 82489036 CCCTTCCTAttttt--tttgtttgtgtttgtttgtggagatggagttttacttttattgcccaggctggagtgcaacggcatgatctcggctcaccgcaacctctgcctcccgggctcaagcgattctcctgcctcagcctcccgagtagctgagattacagtcatgc----accaccatgcccggcta-attttgtatttttagtagaga-ggggtttctccatgttggccaggctggtctcgaactcccgacctcaggtgatctgcccacctcggcctcccaaagtgttggaattacaggagtgagccaccgtgcccggcc a score=28576.0 s hg17.chr17_random 1242184 200 + 2618010 CTCACCGTTCCTATGTAAAGCCAAAAGCATTCACTCACTGTCCATCCACAGCACAGGTTGGAAGCCACTTAGGAGCCCT---GGGGGTTGAATCTAGTGAAGAGAATCTGACGATGCCTGGT----------------GCACTCTGGGGTGAATTCATTTTGACACCTAGCTCTGAATTTTTAGAAATATCGTTGTTCTTAATATTGGTGTTTTAGATA s panTro1.chr19 63544406 200 + 82489036 CTCACCCTTCCTATGTAAAACCAAAAGCATTCACTCACTGTCCATCCACAGCACAGACTGGAAGCCACTTAGGCACCCC---GGGGGTTGAATCTAGTGAAGAGAATCTGACGATGCCTGGT----------------GCACTCTGGGGTGAATTCATTTTGACACGTAGCTCTGAAGTTTTAGAAATATCGTTGTTCTTCATATTGGTGTTTTAGATA s canFam1.chr9 46526705 201 - 53642819 CTCAC--TTCCTAGGTAAAACCAAAGGAATTCATTT----TCAACTCACAGTGCATTTTGGAGGCCATTTAGAAGGCCCTGGGGGGGTTGAGTCCACGTAGAGGAATGTGGTGATACGTGGCCCAGTGAGGGGATCTGGAACCCTGGGGTAGG-------TGACACG----TCCAGAGCTTCAGAAACATCTTTGTTCTTTGAATTGG-GGTTTAGATA a score=16296.0 s hg17.chr17_random 1242384 185 + 2618010 AAGAAGGCACATTAGttttctttttctttt-tttgagatagagtctcactgtatcacccaggctggagtccagtggtgcaatctcagctcactgcagccttgacctccctggctcaagcgatcctcccacctcagcctcccaagtagctgggactacaggtgcacaccaccacgcctggctaattt s panTro1.chr19 63544606 186 + 82489036 GAGGAGGCATGTTAGttttatttttcttttgtttgagacagagtctcactgtatcacccaggctggagtccagtggtgcaatctcagctcactgcagccttgacctccctggctcaagcgatcctcccacctcagcctcccaagtagctgggactacaggtgcacaccaccatgcctggctaattt a score=11652.0 s hg17.chr17_random 1242569 128 + 2618010 ttgtattttgtagagacggggttttgtcatgttgcccaggctggtcttgaactcctggactcaagcaatcctcctgctttggcctctcaaagtgctgggattataggagtgagccaccgcactcagct s panTro1.chr19_random 57350869 128 - 57627672 ttgtattttgtagagacggggttttgtcatgttgcccaggctggtcttcaactcctagactcaagcaatcctcctgctttggcctctcaaagtgctgggattataggagtgagccaccgcacTGAGCT a score=12269.0 s hg17.chr17_random 1242697 67 + 2618010 gaaatgttccatgtctttatctggatggtggttacct--gggtgtcca--tgtaggtaaaaatgcattgag s panTro1.chr19_random 57350997 67 - 57627672 gaaatgttccatgtctttatctggatggtggttacct--gggtgtcca--tgtaggtaaaaatgcattgag s canFam1.chr9 46529522 70 - 53642819 gaaatg-tccgtatcttgatctggatggcagttatgtgagggtgtctgtctataggtagaaacgtgttgag a score=22524.0 s hg17.chr17_random 1242764 244 + 2618010 Tggctgggtacagtggctcactcctgt--aatcccagcactttgggagactgaggcaggagggtcacttgagtccaggagttcaagaccagcctgagcaatatggcgaaacccaatctctactaaaaatacaaaaattagctgggcattgtgacttgggcctgtaatcccacatactcatgaggctgaggcacaagaatcacttgaagccgggaggcagaggttgcagtgagccaagattgcacca s panTro1.chr19_random 57351064 246 - 57627672 Tggctgggtacagtggctcactcctgtaaaatcccagcactttgggagactgaggcaggagggtcacttgagtccaggagttcaagaccagcctgagcaatatggcgaaaccccatctctactaaaaatacaaaaattagctgggcattgtgacttgggcctgtaatcccacatactcatgaggctgaggcacaagaatcacttgaagccaggaggcagaggttgcagtgagccaagattgcacca a score=4397.0 s hg17.chr17_random 1243008 61 + 2618010 ctgaactccagcctggatgacagagtgagaccttgtctgggaaaaaaaaaaaaGCATTGAG s panTro1.chr19 63545223 55 + 82489036 ctgaactccagcctggatgacagagtgagaccctgtct------aaaaaagaaGCATTGAG a score=7981.0 s hg17.chr17_random 1243069 46 + 2618010 CGGCACGCTTCAGATTACAGCACTTCACACTCATTACTGAATACAA s panTro1.chr19 63545278 46 + 82489036 CAGCACACTTCAGATGAGAGCAGTTCACACTCATTACTGAATACAA s canFam1.chr9 46529592 46 - 53642819 ctgcacacttcagattggagccctttacacacattattgtatgtat a score=23203.0 s hg17.chr17_random 1243115 301 + 2618010 ATTGCACAT-AAggccaggtgtggtgtctcacgcctgtaatctcaacactttgggaagccaagatgggcggatcacctgaggtcagaagttcgagtccagcctggccaacatggtgaaatcccgtctctactaaaaatgcaaaaattagtcaggcatggtgtcgggcacctgtagtcccagctacttgggaggctgaggcaggataatcccttgaacctgggaggtggaagttgcagcgtgctgatatcgcaccactgcactccaacgtggtcgacagaacaagactcgtctcaaaaaaaaa s panTro1.chr19 63545324 301 + 82489036 ATTGCACCTTAAagccagctgcagtgtctcacgcctgtaatctcaa-actttgggaagccaaggcgggcggatcatctgaggtcaggagtttgagaccagcctggccaacatggcaaaaccctgtctctactaaaaatgcaaaaattagccaggcatggtggcaggcgcctgtactcccagctacttgggaggctgaggcaggagaatcccttgaacctgggaagtggaggttgcagtgtgctgatatcgcgccactgcactccaatgtgggtgagagagcgagactcgtctcaaaaaaaaa a score=35244.0 s hg17.chr17_random 1243416 282 + 2618010 TTAAATTAAA-AAGTTGTACCTT--ATTATAATA--AAGACAATAGAAAGGGAGGAATCTAGGAGAATAAGTTGTTGTAAGGGTGAACAAGGTTCATAAAACACACACGCACAcac----------------cctgtggtggttgtgaggac---tggtgtggtacaacagaggaagagaaggcagggagaccagagttgaaggctattgca-tgttgtccaCGTTTTAATCTC--TTAGGCAGAAAAGG------GCAAAGACATGCCCTTTTCATTGTCACCAGCTTTACTTTTACCTTTTAAAAGTAAATTG s panTro1.chr19 63545625 294 + 82489036 ---aaTTAAATAAGTTGTACCTT--AATAAAATA--AAGACAATAGAGAGGGAGGAATCTAGGAGAATTA-TTATTTTAAGGGCGAACAAAGTTCATAAAacacacacacacacacacacacacacacacacCCTGTGGTGGTTGTGAGGAC---TGGTGTAGGACAACACAG-AAGAGAAGGCAGGGAGACTAGAGTTAAAGACTATTGCT-TGTTGTCCACGTTTTAATCTC--TTAGGCAGAAAAGG------ACAAAGACATGCCCTTTTCATTGTCACCAGCTTTACTTTCACCTTTTAAAAGTAAATTG s canFam1.chr9 46529644 272 - 53642819 -----tcaaataaaaTAGACCTCAAAATAAAATACGAAGACAAATGAAAAGGAGGAATCTAGGAGA--------CGTTAAAGGTGCACAAAGTTAGCCAAAAACAAGC-------C----------------Cctctggctgtcgtgtggacaggaggtaggggccga------gagcagaagcaggaaggcccaagttggaagctattgctgtGCTGTCCAGATTGTATCCTCTATCGGGCAGAGAGGGAGGAGAAAGAGGACGTGCCCTCCTCATTGGCACTAGCTTCACTTT-ACCTTTTGAAGGTAAATTG a score=542.0 s hg17.chr17_random 1243698 7 + 2618010 TTggctg s panTro1.chr19 63545919 7 + 82489036 TTggcta a score=21171.0 s hg17.chr17_random 1243705 291 + 2618010 ggcgtggtggctcacgcctgtaatcccagcactttgggaggccaagg-----------------------agttcaagacc-gcctggccaacatggcaaaaccccatctctactaaaaatacaaaaagtatccatatgtggtggcaggcacctgtaatcccagctactcgggaggctgaggcaagagaatcgcttgaacccacgaggtggaggttgcagcgagctgagaccatgccattgcactccagcctgggcaacaagagcgaaactccgtcgcaaaaaaaaaaaaaaaaaaaaaaaaagtctacagaatt s panTro1.chr19 63547045 305 + 82489036 ggcgcggtggctcacgcctgtaatcccagcactttgggaggctaaggtgggcagatcatctgaggccaggagttcaagaccagcctggctaacatggagaaaccccatctctactaaaaatacaaaaattagccagacgtggtagcaggtgcctgtaatcccaactactcaggaggctgaggcaggagaatcgcttgaacccacgaggtggaggttgcagtgagctgagaccatgccattgcactccagcgtgggcaacaagagtgaaactccatctcaaaaaaaaaaaaaaa----------gtctccagattt a score=2670.0 s hg17.chr17_random 1243996 22 + 2618010 t-gtcaattgtcatcttgggggg s panTro1.chr19 63547350 23 + 82489036 ttgtcaaatgtcatcttgggggg s canFam1.chr9 46533833 21 - 53642819 -tgtcaa-tgtccccttgagggc a score=15845.0 s hg17.chr17_random 1244018 48 + 2618010 caatatctccctcgactgagaaccactgCTTTAGA----TAAAAGCAAAATC s panTro1.chr19 63547373 48 + 82489036 caatatctccctcgattgagaaccactgCTTTAGG----TAAAAGCAAAATC s mm5.chr11 106652878 43 + 121648857 CAAAATCTGCCT----TTAGAACCAACAATTTAAA----TAGAC-TAGAATC s rn3.chr10 96350438 43 + 110733352 CAAAATCTGCCT----TTAGAACCAACAATTCAAA----TAGAC-TAGGATC s canFam1.chr9 46533854 52 - 53642819 caaaactgcccttgactgagaactattACTTTAGatttttaaaaaaaaaatt a score=2238.0 s hg17.chr17_random 1244066 4 + 2618010 TTAg s panTro1.chr19 63547421 4 + 82489036 TTAg s mm5.chr11 106652921 4 + 121648857 TTAG s rn3.chr10 96350481 4 + 110733352 TTAG a score=23683.0 s hg17.chr17_random 1244070 308 + 2618010 gccaggctcggtggctcacgcctgtaatcccagcactttgggaggccgaggtgggtggatcatttgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccctgactctactaaaaatacaaaattagctgggtgtggtggcacgtgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagctgagatggcgccattgcacccagcctgggcaacaaaggcaaaactccacctcaattaaaaaaaaaaaaaaaaaagcaaaa s panTro1.chr19 63547425 294 + 82489036 gctgggcgcaatggctcacgcctgtaatcctagtactttgggaggctgaagcgggtggatcatttgaggtcaggagttcgagaccagccagaccaacatggtgaaaccctgactctactaaaaatacaaaattatctgggtgtggtggcgcacgcctgtaatcccagcaacttgggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagctgagatcgcgccattgcacccagcttgggcatcaaaagtgaaactccatctcaa--------------aacaaagcaaaa a score=588.0 s hg17.chr17_random 1244378 20 + 2618010 TCTTAGACTTGTCCATTTTT---- s panTro1.chr19 63547719 13 + 82489036 TCTTAGACTT-------TTG---- s rn3.chr10 96350485 20 + 110733352 ACTTGGTTTCTGTTGTTTTG---- s canFam1.chr9 46534140 24 - 53642819 TCTTAGACTTGCTTTTTTTTTTTT a score=13174.0 s hg17.chr17_random 1244398 21 + 2618010 GGGCCATTGCCTGAAATCCTG s panTro1.chr19 63547732 21 + 82489036 GGGCTATTGCCTGAAATCTTG s mm5.chr11 106652959 21 + 121648857 AAGCCATTACCTGAAAGTTTG s rn3.chr10 96350514 21 + 110733352 AAGCCATTACCTGAAAGCTTG s canFam1.chr9 46534164 21 - 53642819 TTGCTATTACCTGAAATTTTG a score=-610.0 s hg17.chr17_random 1244419 2 + 2618010 GA s panTro1.chr19 63547753 2 + 82489036 GA s mm5.chr11 106652980 2 + 121648857 CT s canFam1.chr9 46534185 2 - 53642819 CT a score=9639.0 s hg17.chr17_random 1244421 19 + 2618010 CAAAGGCCTA-ACTGACCCA s panTro1.chr19 63547755 20 + 82489036 CAAAGGCCTAGACTGACCCA s mm5.chr11 106652982 19 + 121648857 CTAATGTTTC-AATGACCCA s rn3.chr10 96350718 19 + 110733352 CTAAAGTTTC-AATGACCCA s canFam1.chr9 46534187 19 - 53642819 CAAAAGTCTA-AATGACCCA a score=600.0 s hg17.chr17_random 1244440 1 + 2618010 G s panTro1.chr19 63547775 1 + 82489036 G s mm5.chr11 106653001 1 + 121648857 G s rn3.chr10 96350737 1 + 110733352 G a score=127093.0 s hg17.chr17_random 1244441 338 + 2618010 TTA-AAATGCC-AGT----ATCTGAGCCCCACTG----TTACGCTGAAGCAAACCAAGGAGGCAATGAATTACATGTTGCCTAACTTGCTTCTCCCTTGCAGTTTCAATTGCGTTAGGC-------AGCCAGCTTCCCTTCCTCTCC-ACTGTTTGAATTGTTGCTG--CCGGGCAAAAACTGCAGCTGGTCCACCTCAGAGCTGGCCTCATTTCAATAATAGCCGGGAGGACTGGCATGGGGCTTTCCAAGCTTAATTAGCTCATGTTTGTAGAGTTCCTTAGGAAGCTCAGGCCAGCATGCTATGGGAAGTCCAAGTTAGTAGGATTCTCG---CCACACTTAGAAAACGAACATTCCC s panTro1.chr19 63547776 345 + 82489036 TTA-AAATACTGAGTTAAAATCTGAACCCCACTG----TTAGACTAAAGCAAACCAAGGAGGCAATGAATTACGTGTTGCCTAACTTGCTTCTCCCTTGCAGTTTCAATTGCGTTAGGC-------AGCCAGCTTCCCTTCCTCTCCCACTGTTTGGATTGTTGCTGTGCCAGGCAAAAACTGTGGCTGGTCCACCTCAGAGCTGGCCTCATTTCAATAACAGCCGGGAGGACTGGCATGGGGCTTTCCAAGCTTAATTAGCTCATGTTTGTAAAGTTC-TTAGGAAGCTCAGGCCAGCATGCTATGGGAAGTCCAAGTTACTAGGATTCTCG---CCACACTTAAAAAAAGAACATTCCC s mm5.chr11 106653002 303 + 121648857 TTAGAAATGGC-AGTC---ATTTGAGGCCTGCTG-----CAGGCTGAAGCAAAGGAGGGAGGCAATTAATTACTCATTGCCTAACTCCATTCTTCCTTG------CCATTGCTTTGGGC-------CTCTGGCTTCCCAT-CTGGCC-ACTATTTG--TTGT-------CCAGG--------GTAACCAGTCTATCTCAGAGCTGGCTACCTTTCAATAATGACAGAGAGGA-----------CTTACCAGGCTTAATTAACTTAGATTTGTAAGGTTTCTTAGGAAGC-----CCAGAATACAAT-GGAAGTCTAAGATACCAGGATTCTCACATCCACGTTCTTAAAAATAACAATCCC s rn3.chr10 96350738 289 + 110733352 TTAGAAATGCC-AGTC---ATTTGAGGCCTGCTG------------------------GAGGCAATTAATTACACATTGCCTAACTCCATTCTCCCTTG------CCTTTGCTTTGGGC-------CTCCGGCTTCCCAT-CTGGCC-ACTATTTGAATAGTTGT----GCAGG--------CTAACCAGTCTATCTCAGAGCTGGCTGCCTTTCAGTAATGGCAGAGAGGA-----------CTTACCAGGCTTAATTAACTCGGATTTGTAAGGTTCCCTAGGAAAC-----TCAGAATACAAT-GGAAGTCCAAGATACCAGGATTTTCCCAGCTACACTCTTAAAAATAACAATCCC s canFam1.chr9 46534401 347 - 53642819 TTG-AAATGCC-AGG----ATCTGAACCCCACTGGAAGTGGCAAAAAGGCAAATGAAAGGGG-GGTTCATTACGTGGTGTCTAAGTTGCTTTCTCCTTGCAGTTTCAGTTACGCGAGGCGCTCGCTGCCCGGCTCTCCTGCCTGCGCTGCGGCTGGGCTTGCTGGG---CCGGGCAGAGAC-GGGGCTGGTCCACCTCAGAGCTGGCTGCGTTTCAGTGCCGGCTGGGAGCGCTCTCCAGGGGCTTTCCAAGCTTCATTAGCTCTTCTTTGTGAAGTTCCTTATGAAGCTCAGGCCAGGATGCTATGGGAAGTCCGAGTTATTAGGATTCTCG---CCACGCTCTTAAAAAGAACCTTCCC a score=697.0 s hg17.chr17_random 1244779 2 + 2618010 AC s panTro1.chr19 63548121 2 + 82489036 AC s mm5.chr11 106653452 2 + 121648857 AC s rn3.chr10 96351027 2 + 110733352 TC s canFam1.chr9 46534748 2 - 53642819 GC a score=129179.0 s hg17.chr17_random 1244781 346 + 2618010 ATAAAAAGGCTGGTAGAGGCAGAAAAGAAC----GCCTCGGAGCGTGTGTGTGAAC-AGCGAA-GGGTCCTTGTGAACCACATTTGAGACC----------ATAAAGAGAG-------------TAATG---------------------------------CATTC-CAAGTTTCAGGCCCTCCTCCTACTCTCTACAGCAGGAAATTATTTAAAGTATTTCCTGAACAGCTGAAGTATGTTAGAAACCTGCTAGCATCCTCCACAGTATCTCCAGGAAATGGACACCAAAAAATTTCTTTGTAATGAGAAACTATCTGAGCTCTACTGGCCATTTCTACCTGA-----ACAGGTTGGAT--ACTCTCAGCCTGGGACCTGGAGAATACAATCTTCTTAGATCATTTTTATGTCA s panTro1.chr19 63548123 351 + 82489036 ATAAAAAGGCTGGTAGAGGCAGAAAAGAGT----GCCTCAGAGCATGTGTGTGAAT-AGCAAA-GGGTCCTTCTGAACCACATTTGAGACC----------GTAAAGAAAGA---------GGGTAATG---------------------------------CATTCTCAACTTTCAGGCCCTCCTCCTATTCTCTAGAGCAGGAAATTATTTAAAGTATTTCCTGAACAGCTGAAGTATGTTAGAAACCTGCTAGCATCCTCCACAGAATCTCCAGGAAATGGACACCAAAGAATTTCTTTGCAACAAGAAACTATTTGAGCTCTACTGGCCATTTCTACCTGA-----ACAGGTTGGAT--ACTGTCAGCCTGGGACCTGGAGAATACAATCTTCTTAGATCATTTTTATGTCA s mm5.chr11 106653454 344 + 121648857 ATAAAAAGGATGACTG--------------------TCCAGAGTGT-TACATGAACGGGTAAA-GGGCCCTTCTGAACTGAACTTGAGGTCAGA--CAGAGGTAGAGAGAGACAGAGAGATAGATAACGACAGAGACAGACAGAGAGAGAGCAGGCACACGCCTTTC-CAGTTGGTTGGCCTTCCTCTTAGCCTCTGCAGCAGGAAATTATTTAAAGTATTTCCTGAACAGCTGAAGTATGTTAGAAACCTGCTAGCTCTCTCCACATTAGTTCCGGGAAGGGAATGATGAGTCATTTCTTTGCACAAGGAGA-----GGAGAATGTCTTTCCATTTTTACCTGAAAGAGACAGGCTAGAT----TGTCAATGTGGGA-------------------------------------- s rn3.chr10 96351178 395 + 110733352 AACAAACAAATCCCAAATTAAAAGGATGAC----GGTGCAGAGTGCGTACATGAAC-AGTTAG-GGGCCCTTCTGAACTGCACTTGAGGCCAGAGGCAGAGGCAGACAGAGAGACTGAGATAGCCAATG----ACAGAGACAGACAGAGAGCACACACACTCCCTTC-CAGTTGGCTGGCCTTCCTCCTAGTCTCTGCAGCAGAAAATTATTTAAAGTATTTCCTGAACAGCTGAAGTATGTTAGAAACCTGCTAGCTCTTTCCACATTAGCTCCAGGAAGTGGACGATGAGTAATTTCTTTGCACAAGGCAAGGA-----AAATGTTTCCCCGTTTTTACCTGAAACGGACAGGCTAGCTTGATTGTCAGTGTGGGACGTACAGAACATACTCT-----GAAGACTTTTGTGTCG s canFam1.chr9 46534750 353 - 53642819 ATGAAAGGGCTGCGTGAGCCAGAACAGAGCTTATAGGAAGGAGCGTGTGTGCGAGT-AGTGAACGGGGCCTTGTGAAGTGCATTTGAGACC----------ATAAAGAAAGA---------GAGTAATA---------------------------------CTTTC-CAACTTTCTGGGCCTCCTCCTATTCTCTAGAGCAGGAAATTATGTAAAGTGTTTCCTGAACAGCTGAAGTATGTTAGAAACCTGCTAGCGTTCTCTACTTTATCTCCAGGAAATAGACGCTGAAGAATTTCTTTGCAACAAGAAACTGTTTGAGCTCTGCTGCCCATTTTCACCTGG-----ATGGGATGGAT----ACTCGCTCTGGGAAGGAAAGACTATAACCTTCTTAGCTTATTTGGATGTCA a score=9736.0 s hg17.chr17_random 1245127 52 + 2618010 AACTTAGCATCCTACTGCAAGAACACACACTGGAAGAGAATTCCTCTTATGT s panTro1.chr19 63548474 52 + 82489036 AACTTAGCATCCTACAGCAAGAACACACGCTGGAAGAGAATTTCTCTTGTGT s mm5.chr11 106653798 34 + 121648857 -----AGCAC---------AGAACACGCTCT----GAGGACTTTTGTTTTGT s canFam1.chr9 46535103 48 - 53642819 TATCCAGCGACCTA----AAGAACATACCCTGGAAGAGAACTCTTCTGgtgt a score=17845.0 s hg17.chr17_random 1245179 153 + 2618010 ATGCACATATATATGAAGAATTCTCT-------------TATATATAT------------AGTATACATACACATATATTAGTATATATCAAGagagacagagacagagacagaAAGAA--------CTTTGTTAGGTAATTTAGCAATGTCAGTAATAGCTTGCTAGTTAG----TTATTCCCGCTCAA s panTro1.chr19 63548526 185 + 82489036 ATGCACATATATATGAAGAATTCTCTTCTAGCATATGTGTATATATATATAGAGAGAGAGAGCATATATACACATATATTAGTATACATCAAGAGAGACGGAGACAGA-ACAGAATGAAGAGACTTTCTTTGTTAGGTAATTTAGCAATGTCAGTAATAGCTTGCTAGTTAG----TTATTCCCGCTCAA s canFam1.chr9 46535151 134 - 53642819 gtg------------------------------------tgtgtgtgt-------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgGAGAGAGACAGAG--AGA-ATATGAAGAA----CTTCCTTTGCCAGGTAATTTAGCAATGTCAGGAATAGCTTGCTAGTTATCTACTTATCCTCACTCAA a score=37782.0 s hg17.chr17_random 1245332 70 + 2618010 TCTTCGGGTGGGGCAAGAATGAGGTCAGCCTCTTTTGTTTTAGGCAGAAT-----TCTAGAACATGCAACACAAG s panTro1.chr19 63548711 70 + 82489036 TCTTCGGGCGGGGCAAGAATGAGGTCAGCCTCTTCTGTTTTAGGCAGAAT-----TCTAGAACATGTAACAAAAG s mm5.chr11 106654276 75 + 121648857 TCTTCGGGTTGGGTAAAAATGAAGTTAACCTCTTCCATTTTAGGCATATCACATAGCTACAACTTATCACAAGAA s rn3.chr10 96351775 66 + 110733352 TCTTTGAGTCGGGTAA-AATGAAGTTAACCTCTTCCATTTTAGGCAT--------TCTAGAACATATGACAAGAA s canFam1.chr9 46535285 70 - 53642819 TCCTCGGGTGGGGTAAAGATGAGGTCAACCTCTTCTGTTTTAGGCATCAT-----TCTAGAACTCACAACGAAAG a score=14581.0 s hg17.chr17_random 1245402 24 + 2618010 GAAACTGCTTGGCCCCATCCTACC s panTro1.chr19 63548781 24 + 82489036 GAAACTGCTTGGCCCCATCCCACC s mm5.chr11 106654351 24 + 121648857 GAAGCTTCGAGACCCCATCCTATC s rn3.chr10 96352054 24 + 110733352 GAAACTTCGAGGCCCCATCCTACA s canFam1.chr9 46535355 24 - 53642819 GAAACTGATCAGCCCCATCCCACC a score=135798.0 s hg17.chr17_random 1245426 376 + 2618010 TCTAGAGATTTGTTCTCTCCAAGGCC--TGCCTATAAATCTCCCAGGGTGGGGTTCCAGAAGAATGGTGCCCCAGCAAGCCAAGTTTGAACCTCCCAAGCAAATC-GCATTGGAA----TGTTGGTGGGGTCACAGGATCAAGAGCCATCTGGGAGCCAGCTGTGACTGGGGCTGA----TTCCCATGATTTCCTATGAGAAGGGCAAGTATGATCACTACAGCAGAAATACCAAAGAAAAATG--GCAATTGTTACCTCC-AGAGCAAAGAACAAGGCCTAGAGCAG-AGCCAGTTCCTGAAGAGAATGACAGATCTGATTATGCTGGTGAAGGCCAGGCAAGTTCTGTGCTTCCTA--ACTAGTTAGA--------CTTTCCTTCTGCGGCAGCGAAGC---- s panTro1.chr19 63548805 380 + 82489036 TCTAGAGATTTGTTCTCTCCAAGGCC--TGCCTATAAATCTCCCAGGGTGGGGTTCCAGAAGCATGGTGCCCCGGCAAGCCAAGTTTGAACCTCCCAAGCAAATCAGCATTGGAA----TGTTGGTGGTGTCACAGGATCAAGAGCCATCTGGGAGCCAGCTGTGACTTGGGCTGA----TTCCCATGGTTTCCTATGAGAAGGGCAAGTATGATCACTACAGCAGAAATACCAAAGAAAAATG--GCAATTGTTACCTCT-GGAGCAAAGAACAAGGCCTAGAGCAG-AGCCAGTTCCTAAAGAGAATGACAGATCTGATAATGCTGGTGAAGGCCAGGCAAGTTCTGTGCTTCCTA--ACCAGTTAGAAG-----CCTTTCCTCCGGCGGCGGCAGAGC---- s mm5.chr11 106654375 339 + 121648857 TCTAGAGGTCTGTTCTCTCC-ATGTC--TGCCTATAAATCTCCCAGTG-GGTGCGTAACAAGCATTGTGCCCCAG-----CAAATTTGAGTCTCCCAAGCAAAAC--------------TGTACCAGGGGTCATGAGACTAAGAGATACCTGGGAGCCAGCTGTGACCTTAGCTAA--------CAAATTCTCCC------------AGTACAATTAC-ACAGCTAAAACAGTAGAGGGGTAGGGAGCAGTTGTCACCTTCAAGGGCAAAGAA-GAGGTCTAGAAAAGCAGGCACTTGCTCAGGAGAGAGACAGCTC--------CTG-----AGCCAGGCTGGCCCTGCCATTTCTA--CATGGTTAGGAAGGAATCCTTTCCACC--CCACAGTAGTGC---- s rn3.chr10 96352201 344 + 110733352 TCTAGAGTTCTGTTCTCTCC-ACGTC--TGCCTATATATCTCCTAGTGGATGGGTTCGCAAGCATTGCGCCCTAG-----CAAATTTGAGTCTCTGAAGCAAAACTGTACCAGGGTGTTTGTTGTTAGGGTCACAAGACTAAGAGCTACCTG-------GCTGTGAACTTAGATAA--------CAAATTCTCCC------------AGTATTATAGT-ACAGCAAAACCAGTAGAGAGCTGGGGAGCAGCTGTTACCTCC-AGGGCAAAGCA-CGGGTCTAGAAAAGCAGGTGCTTCCTCAGGAGA--GACAGCTC--------CTG-----AGCCAGGCTGGCTCTGCAATCCCTA--TGTGGTTAGGAAGGAACCCTTTCCACC--CCACAGTAGTGC---- s canFam1.chr9 46535379 390 - 53642819 TCTAGAGACTTGCCCTCTCCAAGGCCGGGGCCCATAAATCTCCCAGGGTGGGGGTCCACGGGCCTCCCGGCCCAGCAGGCCAAGTTTAAGCCTCCCCAGCACATCCACTTTGGGA----TGCTGGTGGGGTCACGGTA-CGAGAGCCATCTGGGAGCCAGCTGTGACTTTGGCGAGCAAATTCCCCTGGTCTCCTATGAGAAGGGCAGACGTGATTACCACAGCAGAAATACCAGCAGAAAATG--ACAGTTGTTACCTCC-AGAGCAAGGAACAAGGCCTAGAAAGGAAGCCAACTCCTGAAGAGAATGACAGATCTGATTATGCTGTGAAAGGCCAGGCAAGTTCCCTGCTTCCTAATAGCAGTTAGGAA-----CCATTCCCCC--CAGCGGCAGCGCAGCC a score=1499.0 s hg17.chr17_random 1245802 3 + 2618010 TCG s panTro1.chr19 63549185 3 + 82489036 TCG s mm5.chr11 106654714 3 + 121648857 TTG s rn3.chr10 96352740 3 + 110733352 TTG s canFam1.chr9 46535769 3 - 53642819 TGG a score=78243.0 s hg17.chr17_random 1245805 226 + 2618010 GATCCAGAGCTTGGGAAGTGTGGGACTTGCCTCTCTGAGACCTGGCTGTC-AGCAGGAGGATGAGGAGCCAAACACATCCCATTGTTACCA--------CCCACCTTCTGGGGCTTGCAGGGAAACTGTGAACTCCTTGCCAAA-CGAG--ATATAAGCC----CTTGCCATCTTCCCTTTCCTGGG---ACAAAGGAACCACACAAGTTTTCA--GTG--TTTCATCATGCTTTTGGAACGAATGTCA s panTro1.chr19 63549188 226 + 82489036 GATCCAGAGTTTGGGAAGCGTGGGACTTGCCTCTCTGAGACCTGGCTGTC-AGCAGGAGGATGAGGAGCCAAACACGTCCCATTGTTACCA--------CCCACCCTCTGGGGCTTGCAGGGAAAC--TGAACTCCTGGCCAAA-CGAGAAATATAAACC----CTTGCCATCTTCTCTTTCCGAGG---ACAAAGGCACCACAGA--TTTTTAGTGTG--TTTCATCATGCTTTTGGAATGAATGTCA s mm5.chr11 106654907 218 + 121648857 GGGTAAATGCCCAAGGAGGGGTGCATCTGCTTCCGAGGGACCTGGCTGTCTGGCAGGAGGACAAGAAACCAGATTC-CCCCCCTGCCCCCAGTGACCTTCCCACCCGCTGGAACCTGCAGGGAAAC--TGAACCTGAAGCCAA----------------------TCCCTATCCCTCCTTTTCTGGGAAAACAGAGGCAGCTCCAA--GTTTCA--GAG--CTTCATCAAGCTTTTGGGATGAATGTCA s rn3.chr10 96352743 197 + 110733352 -GGTAAATGCCCTAGGAGGGGTGCAGGAGCTTCTGAGGGACATGGCTGTCTGGCAGGAGGATAAGGAACCAGACAG-------TCTCCCCAGGGACCTTCCCACCCGCTGGAACCTGCAGGGAAAC--TGAGCCTGAAGCCAA--------------------------------TTCTTTCTGGGG---AAACAGGCAGCCCCAA--GTTTTA--GAG--TTTCATCAAGGTTTC-GAATGAATGTCA s canFam1.chr9 46535772 227 - 53642819 GATCCAA--CTTGGGAAGTGTGTGATTTGCCTTTCAGAGACCTGGCTGTC-AGCAGGAGGATGAGGAGCCAAACACGTCCTGTTGACACCG--------CCCACCCTCTGGGGCCTGCAGGGAAGC--TGGACATGAGGCCAAAGGGAGAAATCCAAAGCCCTGCCTGCCATCTTCTCTCTCCGGGA---ACAGAGGCACCAC--A--TTCTTA--GTGCCCTTCATCATGCTTTTGGAATGAACGTCA a score=780.0 s hg17.chr17_random 1246031 2 + 2618010 AC s panTro1.chr19 63549414 2 + 82489036 AC s mm5.chr11 106655125 2 + 121648857 GC s canFam1.chr9 46535999 2 - 53642819 AC a score=15909.0 s hg17.chr17_random 1246033 99 + 2618010 CAAAGGCCATCTTTTAAGGACAACAGCTAAAACGCCTGTCCAACTAGAGTTCTTTAGTC-AATGGCAGTTACATTCGTTCATCTGAGGTCTT-ACACTACT s panTro1.chr19 63549416 100 + 82489036 CAAATGGCATCTTTTAGGGACAGCGGCAAAAACGCCTGTTCAACTGGAGTTCTTTAGTCAAATGGCAGTTACATTCACTGATCTGAGGTCTT-AAACTACT s canFam1.chr9 46536001 101 - 53642819 CAAATGCCATCTTTTCAGGACAGCACTTACCACTCCCGTTCCACCAGAGTCCTGTAGTCAAATCACAGCTAACATCGTTGGTCTGAAGTCTTAAAACTACT a score=1336.0 s hg17.chr17_random 1246132 32 + 2618010 -------------------------TAGGATCAGGGAGTGACATTTAAAAAAA---AGCg s panTro1.chr19 63549516 35 + 82489036 -------------------------TAGGCTCAGGGAGTGACATTAAAAAAAAAATAGCa s canFam1.chr9 46536206 53 - 53642819 CAAGAATAAAAACTACGGCATGAAGCGAACTCAGATGGTGACATTAAAAAGTG------- a score=3678.0 s hg17.chr17_random 1246164 53 + 2618010 acagggtgcagtggctcatgcctgtaatcccagcacttt--gaggccacggtggg s panTro1.chr19 63549551 55 + 82489036 gctggatgcggtggctcatgcctgtaatcccagcactttgggaggctgcagtggg a score=41120.0 s hg17.chr17_random 1246217 605 + 2618010 cACgtgtccagaactggtgggttcctggtctcactgacttcaagaacgaagctgcaaaccctcgctgtgagtgttacagctcttaaagaggcgtgtctggagtctgtcctgtctgatgttcagatgtgttgggagtttcttccttctggtgggttcatggtctacgctggctcagaagtgaagctacagaccttcacggtgagtgttaacagttcttacggcagcgcatctggagt-------------tgttca-----------------ttcctcccgacggccttgtggtctcgctgggctcaggagtgaa---------------------------------------------------agttg----------------------------------------------------cagaccttctcggcgagtgttacagcttttaaaaacaccgtagacacaaaaactgagcagtagagtaagatttatggcaaaaagcaaaagaacaaagcttccacggcgcgtaagaggacctcagcaggttggcaatgctggctcgggcagcctgcttttattctcttatctggccccacccacatcccgctgattggtagagccgagtggcctgttttgtcagggcgctgactggtgcgtttacaatccctgagctagatagaaaggttctccacatccc-------catcagattagttagatacagagattcgacacaca s panTro1.chr19_random 57355566 733 - 57627672 catgtgtccagaattggtgggttcttggtctccctaacttcaagaacgaagctgcagaccctcgctgtgagtgttacagctcttaaagaagcgtgtctggaatctgtcctgtctgatgttcagatgtgttgggagtttcttccttctggtgggttcgtggtct-cgctggctcaggagtgaagctgcagaccctcgcagtgagtgtt-acagctcttaaggtggcgcatctggagtctgtcccttctgatgttcagatgtgttcggagttttttccttctggtgggttcatggtctcgct-ggctcagaagtgaagctacagaccttcacggtgagtgttaacagttcttacggcagcgcatctggagttgttcatttctcccgatggccttatggtctcgctgggctcaggagtgaaagttgcaaaccttctcggtgagtgttacagcttttaaaaacagcgtggacacaaaaactgggcagt--agtaagacttatagcaaagagcaaaagaacaaagcttccacaacatgtaaggggacctcaacaggttgccaatgctagctcgggcagcctgcttttattctcttatctggccccacccacatcctgctgattggtagagccgagtggcctgttttgtcagggcgctgattggaacgtttacaatccctgagctagatacaaaggttct-------cctatacggcatcagattagttagatacagagtttcgaCACACA a score=4053.0 s hg17.chr17_random 1247844 60 + 2618010 aaaaaaaaaaaag--gccgggcgcggtggctcacgcctgtaaccctagcactttgagaggcc s panTro1.chr19_random 7944857 62 - 57627672 AAAAAAAAAATAGCagctggatgcggtggctcatgcctgtaatcccagcactttgggaggct a score=14421.0 s hg17.chr17_random 1247913 256 + 2618010 ggatcgcctgagctcaggagtttgagaccagcctggtcaacaacagtgaaaccccgtctccactaaaatacaaaaaattagc------cgg----gcatggcagcatgcgcctgtagtcccagttactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgagatcacgccactgcactccagcctgggcaaca-gagcgagactccatctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa s panTro1.chr19 63549607 249 + 82489036 ggatcac--aaggtcaggagttcgagaccagcctggccaacatt-gtgaaaccccatctcta--aaaatacaaaaaattagctcgacccggtggtgcatg----------cctgtaatcctagctactcaggaggctgaggcaggagaataacttgaacctgggaggtggagtttccaatgagccaagattgcgccattgccctccagcctgggcaacaagagcaagactccgtc---aaaaaaaaaaaaaaaaaagaaaagaaaaa a score=4091.0 s hg17.chr17_random 1248169 35 + 2618010 aaaaaaaaGCACATTTACAAAAGTGTAGGAAATAg- s panTro1.chr19 63549856 35 + 82489036 aGAAAAAAGCATATTTACAAATGTGTAGAAAATAg- s canFam1.chr9 46536422 29 - 53642819 aAAAAAAATCACAGT-------GTGTAGAAAGTAAA a score=24665.0 s hg17.chr17_random 1248204 307 + 2618010 gccgggcgcattggctcacatctgtaatctcagcactttgggaggctgaggtaggtggatcacctgaggtcaggagttcaagaccagcctgcccaacatggtgaaactccgtctcctactaaaaatacaaaaattagctggtcatggtggcgcacgcctgtaatcccagctattcgggaggctgaggtgggagaattgcttgaacctgggagatggaggttgtagtgagccgagattttgccactgcactccagcctgggcaacagagtgagacttcatctcaaaagaaacaaaaaaagaaaa--------------------gaaa s panTro1.chr19 63549891 326 + 82489036 gctgggcgcggtggctcacatctgtaatcccagcactttgggaggccgaggtaggtggatcacctgaggtcaggagttcaagaccagcctggccaatatggtgaaactccatctt-tactaaaaatacaaaaattagctgggcatggtggcgggcacctgtaatcctagctactcgggaggctgaggtgggagaattgcttgaacctgggagacggaggttgcagtgagccaagatttcgccactgcactccagcctgggcgacagagtgagactttgtctcaaaagaaacaaaaaaagaaaaacaaaaCAAAAAAAAGAAAAGAAA a score=53279.0 s hg17.chr17_random 1248511 352 + 2618010 TGGAAAGGAACTACACCTGAAACTTGTAATATTTTGAAGGTAGCTCTGCCTTTGAGGGCCTAATTTTCCCCAGGCTATATTCCCCTTTCTTTGAAAAG---CACCCACATGTATTTAACAGTAAACTGTGCATACAGTTTCAGAGGTTCAGGAGCCCCATAA---CCTATCTTGGATCTCAGGTTACACAGGTTAAGAATTCTTATTCATGCCAAAATATACAATCCAAAGGTAGAATTTTAGGTTATTATTTTAAT----------------------CTTTGTGGTATTCTGTTTTTC-AAACTTTCTAAAATTAG-TATTATTTCTGTAACTAG-GAAAATACATTTTAAAGAGTTACCAGgaagaaaag-----------gaagaaagaa s panTro1.chr19 63550217 386 + 82489036 TGGAAAGGAACTACACCTGAAACTCATAATATTTTGAAGGTAGCTCTGCCTTTGAGGGCCTAATTTTCCCCAGGCTGTGATCCCCTTTCTTTGAAAAG---CACCCACATGTATTTAACAGTAAACTGTGCATACAGTTTCAGAGGTTCAGAAGCCCCATAA---CCTATCTTGGATCTCAGGTTACACAGGTTAAGAATTCTTATTCAGGCCAAAATATAAAATCCAATGGTAGAATTTTAGGTTATTATTTTAATTGTTTTAGGTTATTATTTTAATCTTTGTGGTATTCTGTTTTTC-AAATTTTCTAAAATAAG-TATTATTTCTGTAACTACCGAAAATACGTTTTAAAGAATTATCAGaaagaaaagaaagagaaaaggaagaaaaaa s canFam1.chr9 46536451 334 - 53642819 TTGGAAAAATCTATACCTCAAGTCTGTAGTATTTTGAAGGTGGTTGCACCTCTTAGAACCTAATTTTCATCAGACTGTGAGCTCCTTTTCCCCAAAAAGCTCACGAGCATGTAT--------------TACATACAATTTTTGGGGTTCATGGGTCCCATTAAGGCCTATCCTGCATCTCAGGTT------------GATTCCGATCTATGAAAAAATGTACAAAtaaatggtgagattttaggctattattttaat----------------------ctttctggtattctgtagttctaaattttctaaaattagttcttacttttgtaaccag-gaaaCATTATTTTACAAAGTTACCAAAAAGAAAGA-----------AAAGGAAAAA a score=8754.0 s hg17.chr17_random 1248863 321 + 2618010 agaggaaggaaggaaggaaggaaggagggagggaggggagagagggagagaaaaaagaaagagtgacagaaagagaagaaggaaggagggagggaggggagagagggagagcaaaaagaaagagag-agagaaagagaaggaaggagggagggaggggagacacggagagcaaaaagaaagagagaaagagaag-aaggaaggagggagggaggggagagagggagagaaaaagaaagagtgagagagagaaagagaagaaggaaggaagggagaaagaaagggaagggaagggaaagggagagaaagtaaggaaaATGAATT s panTro1.chr19 63550603 205 + 82489036 agagaaaggaaggaaggaaggaaggagagaggaaggg-----agggag------------------------------------ggagggaggagagagagagagggagagaaaaaagaaagagagtagagagagagaaagaagga---agggaagg-----------------------------aagagaaggaaggaaggaaggaaggaagg---------------aaagaaagaaagaaagaaagaaaga-aagaa-----------agaaagaaaggaa--ggaagg----------------aaggaaAATGAATT a score=19790.0 s hg17.chr17_random 1249184 118 + 2618010 AGTTTTGTGTTCCCCAAGTTAATCTTT--GCTGAGTGGCTGAGAT-GTTGGTTGAAAGGATGGGCAAGAACAGAGTAGGGTGACAGTCATTGGTCACCTACAACTTTAGTCTAAGACAAAG s panTro1.chr19 63550808 118 + 82489036 AGCTTTGTGTTCCCTAAGTTAATCTTT--GCTGAGTGATTGAGAC-GTTGGTTGAAAGAATGGGCAAGAACAGAGTAGGGTGACAGTCATTGGTCACTTACAACTTTAGTCTAAGCCAAAG s canFam1.chr9 46536785 119 - 53642819 CGCTTCATATTCACTAAATTAATGTTTCCCCTAAGTGACAGAGACAGTTGGTTGAGAGGATGGGCAGCAAGGATGCCAG--GACAGTCACTAGTCACCTAAAACTTCGGTCTAAATCAAAG a score=25859.0 s hg17.chr17_random 1249302 335 + 2618010 GGTTGAAAGAGACCATCTTggccaggcgtggtgtctcatgtctgtaatcccagcactttgggaggcccaggcaggcggatcacctgaggtcgggagtttgagaccaccctgaccaacatggagaaaccccatctctactaaaaatacaaaattagcccggtgtggtggtgcatgtctgtaatcctggctactcgggaagctgagtcgggagaatctcctgaacctgggaggcggaggttgcagtgagctgagatcacaccattgcactctagcctgggcaacgagagcaaaactccatctcaaaaaa-------------aaagaaaaaGACCATCTCATTCGTACAT s panTro1.chr19 63550926 348 + 82489036 GGTTGAAAAAGACCATCTTggctgggcgtggtggctcatgcctgtaatcccagcactttgggaggcccaggtgggtggatcacttgaggtcaggagtttgagaccagcctgaccaacatagagaaacccggtctctactaaaaatacaaaattagcctggtgtggtggcgcatgcctgaaatcctggctacttgggaggctgaggcaggagaatctcctgaacctgggaggcggaggttgcaatgagccaagatcatgccattgcaccccagcctgggcaacaagagtggaactctgtctcaaaaaagaaagaaaaaaagaaagaaaaaGACCACCTCATTTATACAC a score=112233.0 s hg17.chr17_random 1249637 713 + 2618010 GTTTTTCTACATTTCTCCTCTATTTCAACAGTTTTGCTTTTAAA-----ATATGTATTTTT-GCAGCCACAATCGGGAGATGCCTTCTGGATATCATCCTTTGACCATTAATTTTAATTTTGAATTGATTCAAAGTTTTCTCATTCATCCAATCTTTCCTCATATTCCCTTGTTTTTATGGATAAGCTTCCAATATTTCTGCCTAAACTTGTTCAAGTTCTAAACATGA--GTTTCTTCATAGTAGAAAATATGGCTTTGTGGTGGCTGTCTCAACAGTCAAGTGTTTGCTCATTAAAGAAACTTCATTAA--CACTAGTATTAGGGGCCTATCAGGTATTGATACTGACAAGCTT---------CCATCACCAAGTTGGACTTGGGTGGTTCAGTC--CTGTTCTCATGGCCAATGAGAAGTTAGGGGAGGAGGTGCTCCAATTATTACGTCCAATAGAATT-AAGAGAAAGGGAACCAGTGGGCACAGGAAGACAGCTGGACCTCTCACTGAGATACTGCAAAGGCTAACAGCCAGTCTAGGAACTTAGTCACAGTGGGCCCTCCTTGAGCCAGTTCCACTGTTCAGAAAGCTATGCCAAGCCCCTAAAAGACCTAAAGGCTGACAAAACATCTGACTTTTCGGTAGAATCCCATCATTAAGTATATGAACAATCCAGTATGGTCATCTTATGTT-ATGTGTATCTGACTGATAAGGGGGAAAAAAAAAGAAGA s panTro1.chr19 63551274 717 + 82489036 AGTTTTCTACATTTCTCCTATATTTCAATAGTTTTGCTTTTAAA-----ATGTGTATTTTTTGCAGCCACAATCAGGAGATGCCTTCTGGGTATCATACCTTGACCATTAATTTTAATTTTGAATTGATTTAAAGTTTTCTTATTCATCCAATCTTTCCTCATATTCCCTTGTTTTTATGGATAAGCTTCCAATATTTCTGCCTAAACTTGTTCAAGTTCTAAACATGA--GTTTCTTCATAGTAGAAAATATGGCTTTGTGGTGGCTGTCTCAACAGTCAAGTGTTTGCTCATTCAAGAAACTTCATTAAAGCACTAGTATTAGGGCCCTATCAGGTATTGATACTGACAAGCTT---------CCATCACCAAGTTGGACTTGGGTGGTTCAGTC--CTGTTCTCATGGCCAATGAGAAGTTAGGTGAGGAGGTGCTCCAATTATTCTGTCCAGTAGAATTCAAGAGAAAGGGAACCAGTGGGCACAGGAAGACAGCTGGACCTCTCACTGAGATACTGCAAAGGCTAACAGCCAGTCTAGGAACTTAGTCACAGTGGGCCCTCCTTGAGCCAGTTCCACTGTTCAGAAAGCTATGCCAAGCCCCTAAAAGACCTAAAGGCTGACAAAACATCTGACTTTTCAGTAGAATCCCATCATTAAGTATGTAAACAATCCAGTATGGTCATCTTATGTTGATGTGTATCTGATTGATAAGGGG-AAAAAAAGAGAAGA s canFam1.chr9 46537128 672 - 53642819 GTTTTCCCACAGTTCTCCCATATTCCAACAGTTGTGCACCCAAAATGGTATGTGGGGTTTTTGTAGCTACAATCAGGAACTACCATCTACATATCAGACCTTGACT-----TACTCATTTTGAGTTAATTC--AGTTTTCTTATTCATCCAGTCCTTCCTCGTCTTCCCTTGTTTTTATGGGTAAGCTTCCAATATTTCTGCCTGAACCTGTTCA--TTCTAAACATCAAGACTTGTTCAGAGAAGAAAATACAGTTTTGT-TTTGCTGCCTTAGTA--------------CATTCAAGGAGCTTCA-CAT--CACCAGGAAAGAAGGCCCATCTGTTGTTTGCAGTGACAAGCTGCCAAGCAAACCATCGCCAAGTTGGACTCGGGTGGCTCAGGTGGCTGTTCTCACGGCCAGCGAGAAGTTAAATGAGGAGGTGCTCCAAACACTCTGTCCACCAGAATT-AAGAGAAAGGGAAAGAGTGGGTACAGAGAGAACAC-AGAGCTCTCCCTGAG--------GAGGCTACAA-------------------------GGGCTCCCCTTGGGTGAGAAGCACCGTTCACAAAGCTAAGGCCAGGCTTTGAAAGGCCGAAAGGCTCCTGAAACATCCAATTTTTGTATTGAATCCTATCATTGAGTA--CAGACAATCCAACAGGGGGCTCCTGTTATCGTACAGTTGTGAATGATTTGAAGAACAAAAGAAAAAGG a score=69.0 s hg17.chr17_random 1250350 2 + 2618010 GT s panTro1.chr19 63551991 2 + 82489036 GC a score=273.0 s hg17.chr17_random 1250352 1 + 2618010 A s panTro1.chr19 63551993 1 + 82489036 A s rn3.chr10 96353944 1 + 110733352 A a score=12072.0 s hg17.chr17_random 1250353 32 + 2618010 ATAATCAACTTAGCCTAGAAGGTAAAATATAT s panTro1.chr19 63551994 32 + 82489036 ATAATAAACTTAGCCTAGAAGGTAAAATATAT s rn3.chr10 96353945 32 + 110733352 ACAATAGACTTAGGCTAGTGTGCAAAATATAT s canFam1.chr9 46537906 32 - 53642819 aTAATAAACTTAGCCTGAAAGGTAAAATCTGT a score=6340.0 s hg17.chr17_random 1250385 53 + 2618010 TA-------AAACAAGAGTCTATGTAAGAACAAACAGAAATCTTTGGTGTTAAAAGGTTG s panTro1.chr19 63552026 53 + 82489036 CA-------AAACAAGTGTCTATGTAAGAACAAACAGAAATCTTTGGTGTTAAAAGGTTG s rn3.chr10 96353977 60 + 110733352 CAGCCTGGGGGGAGGGTGTCTCTGGAAGAACAGAAGGATGTTCTTACCACTAAAGGGTGG a score=14653.0 s hg17.chr17_random 1250438 157 + 2618010 GAGGCagccaggtgcagtggctcattcctgcaaatcccagcactttgggaagctgaggcaggaggatagcttgaggccaggaatttgagaccagcctgggcaacacagcgaaactttgtttcttcaGTTATTACAGCTATTCCCAAAAACAAAAAGT s panTro1.chr19 63552079 157 + 82489036 GAGGCagccaggtgcagtggctcattcctgcaaatcccagcactttgggaggctgaggcaggaggatagcttgaggccaggaatttgagaccagcctgggcaacacagcgaaactttgtttcttcaGTTATTACAGCTATTCCCAACAACAAAAAGT a score=3786.0 s hg17.chr17_random 1250595 32 + 2618010 TTGGAATAGCCGTAATACTCATCTAGGATATT s panTro1.chr19 63552236 32 + 82489036 TTGGAATAGCCATAATACTTATCTGGGATATT s canFam1.chr9 46537957 27 - 53642819 CTGAGATAGC---AATATTAATATAG--TATT a score=21913.0 s hg17.chr17_random 1250627 174 + 2618010 TCTATTA--TGTAGGAATTAGTATCTATACTTTTCTTATGCCA-GCACTTAGCTGCCCCA-----CCAAAAGGTCTTTCACtgacacaataaagaggcaggatttgaattcagacagatctggctcttaaatactagtccacttcactgcaccatgctacctcccACAACTAGGATGGGAAA s panTro1.chr19 63552268 174 + 82489036 TCTATTA--TGTAGGAATTAGTATCAATACTTTTCTTATGCCA-GCACTGAGCTGCCCCA-----CCAAAAGTTCTTTCACTGACATAATAAagaggcaggatttgaattcagacagatctggctcttaaatactagtccacttcactgcaccatgctacctcccACAACTAGGGTGGGAAA s rn3.chr10 96354174 132 + 110733352 TTTGTTT--TGCAGCCATAGGTACCCTTACTT----------------AGAGTTG------------------TATTCAACT--------------GCAGAATGTAACCGTAGGCAGACGCAGCAGCCAATCAGCCGTCCACCAAACGGCACCACAGTGCTTCCCAGCTCTGACTTGGGGCA s canFam1.chr9 46537984 157 - 53642819 --TATTACCTTTAGAGA-----------ACTTATTTTATACCAGGGATTGTGCTATTTTGATGgtccaaggg----tcaactaacatatggaagaggcagcatttgaactcaggcaggtctgactccttattacttgtcctttccactgcacta--------cCCAGAACTAGGATGGGGAA a score=1326.0 s hg17.chr17_random 1250801 3 + 2618010 AGA s panTro1.chr19 63552442 3 + 82489036 AGA s mm5.chr11 106657316 3 + 121648857 AGA s canFam1.chr9 46538141 3 - 53642819 GGA a score=160.0 s hg17.chr17_random 1250801 3 + 2618010 AGA s canFam1.chr9 46538141 3 - 53642819 GGA a score=118110.0 s hg17.chr17_random 1250804 264 + 2618010 CATTTACGATTGTGAAAAGCCTGGAACGCAC----GAACTGATCAGTTTAAGAGGGTTCGATGCATACACCTCCTACACAGTGTTATGAAACTGTCCCAAATATTTAGGAGGAACTGAGCGTTCA---GACACTAGAATTA-GCTTTC-AAACTATGCCAA---CATGTCATTTAACATGCAAGTGCTCAAAATTAAATTGCACTTCTGCCCTCAAAAAA---CCCTAGTTGATAGCTTGGGTGTTTCTTATCAT-----TTTTATTAGCTGGGGTTATGAAAC s panTro1.chr19 63552445 267 + 82489036 CATTTACGATTGTGAAAAGCCTGGAACGCAC----GAACTGATCAGTTTAAGAGGGTTCGATGCATACACCTCCCACACAGTGTTATGAAACTGTCCCAAATATTTAGGAGGAACTGAGCGTTCAC-AGACACTAGAATTA-GCTTTCTAAACTATGCCAA---CATGTCGTTTAACATGCAAGTGCTCAAAATTAAATTGCACTTCTGCCCTCAAAAAA---CCCTAGTTGATAGCTTGGGTGTTTCTTATCAT-----CTTTATTAGCTGGGGTTATGAAAC s mm5.chr11 106657319 264 + 121648857 CAGCTACCACCG---AGAGCTTGGCAGCAAT----ATACTCATCAGTCC-AGAGGGCGGGGTGCATGTAATTCACATACAGT-CTAGGAAATTGTCCCAAGGATTTAGTAGGAACTAGGGGTTTGC-AGACATCAGAATGATACTTTC-AAACTATGCCAACACCACTGCATTTAACACACAAATGCTTGCAACTCAACTGCACTGCTGCCC-CTCAAAG---CCCTACTTGATAGACTGGGTGGTTTTTGTCAT-----TTCAAAAAAAAAAAAAAAAAAAAC s rn3.chr10 96354306 265 + 110733352 CAGCTACCACTG---TGAGCTCAGAAGCAATGTAAGAACTCATCAGCTC--------TTGGTGCATGCAATTCACATACAGTCTTAGGAAATTGTCCCAAATATTTACTAGGAACTAGGGGTTTGC-GGACATCGGAATAATACTTTT-AAACTATGCCAACAACGTAGCATTTAACACACAAATGCTTGGAACTCAATTGCACCACTGCCC-CTCAACG---CCCTACTTGATAGGCTGGGTGGTTTTTGTCATTTTAATTTTATTAAC--AGGTTATAAAAG s canFam1.chr9 46538144 275 - 53642819 CGTTCTTGGTGA---AGAGCCTGGGAGGAATGCATGAACTGATCAATAGGAGAAAGTTTGGCACATCCAACTCCTACACAGCGTTAGGAGATGGTCCCAAATATTTAGGAGGAACTGGGCGTTTGCAAGACACCAGAATAATGCTTTC-AAATTATGCCAGCAGCATGCCATTTAACATACAAATGCTCAAAATTAAATTGCTCTTCTGCCCTCAAAAAAAACCCCTACTTGATAGCTTGAGTGTTTTTTATCAT-----CTTTATTAGCTGGGGTTATGAGAC a score=100642.0 s hg17.chr17_random 1251068 208 + 2618010 TTAAATGGGTGATGTTGCTAAAACACTTTTCTCTAACACTTTCCCA----------TGGGGAGTT---AGAGGGAGGCTG-CATGATTTGGCCGGG-TTTTGTTCATCACAAATTAGGTCAACAGCCCAATCCCAAAAGAAAGCACCATTAGTGAAATGACACGTTTCAAGGGCTTTCCAAAATCAGTCCACTGGGTTTTGGCAAGCTCCAGCAAGGGTGGAG- s panTro1.chr19 63552712 209 + 82489036 TTAAATGGGTGATGTTGCTAAAACACTTTTCTCTAACACTTTCCCA----------TGGGGAGTTT--AGAGGCAGGCTG-CATGATTTGGCCGGG-TTTTGTTCATCACAAATTAGGTCAACATCCCAATCCCAAAAGAAAGCACCATTAGTGAAATGACATGTTTCAAGGGCTTTCCAAAATCAGTCCACCGGGTTTTGGCAAGCTCCAGCAAGGGTGGAG- s mm5.chr11 106657735 206 + 121648857 TTAAATCCTTGATGTT-CTAGAACACTTTTCACTAACAC--TCCTAGGGGTGGGAGTGGGGAATATTGGGAAGGAGGATGACATCACACGGCCAGGTTTTTGTTCATTACAAATTAGGTCAACAACCCAATTTCAAAAGAAGGCCCCAGTAAT----TGATATGACCTAAAAGCTTCCCAAAACCAGTCCACTGGGTTTGG----------GCAAGGGCAGAG- s rn3.chr10 96354574 204 + 110733352 TCAAGCCCTTGATGTTCTTAGAACACTTTTCACTAACACTTC--------------AGGGGGATATTGGGAAGGAAGAGGACATCATGTGGCCAGGTTTTTGTTCATCACAAATTAGGTCAACAACCCAATTTCAAAAGAAGGCCCCGGTAA-----CGATGTGACGCAAAAGCTTTCCAAAATCAGTACACTGGGTTTGGGCGAGCTCGACCAAGGGCAGAG- s canFam1.chr9 46538419 198 - 53642819 TTAACTCAGTGATGTTGCTA-AACACTTTTCACT-ACATGTTCCCC----------TGGGGG------AGAGGGGCGCTG-CAGGATTTGGCCAGG-TTTTGTTAATCACAAATTAGGTCAACAGCCTGATCTCAAAAGAAAGCACCATTAA-----TGACATGTTTCAAGGGCTTTCCAAAATCAGTCAGCTGGGTTTTGGCAAGCGTCAGC-AGGGTGGAGG a score=10419.0 s hg17.chr17_random 1251276 88 + 2618010 AGGGGTAAGGAG-CAGC-----CAGG--------CCTTAATGGCCTTCTGAACTTGGGTCCT--GTATCTGAC-AAGGTTTCCAATGGCTC-----------------------------------------------------C-TATGAACAAAACT s panTro1.chr19 63552921 88 + 82489036 AGGGGTAAGGGG-CAGC-----CAGG--------CCTTAATGGCCTTCTGAAGTTGGGTCCT--GTATCTGAC-AAGGTTTCCAATGGCTC-----------------------------------------------------C-TATAAACAAAACT s mm5.chr11 106657941 92 + 121648857 GGAGGGAACTAGCCAGTTGTTGTAGC--------CCCTAATG--CCTCTGAACGTGGGCCCA--CCCACTCACTGAGGTTTCCA--GGCTT-----------------------------------------------------TGTATAAACAAAACC s canFam1.chr9 46538617 151 - 53642819 GGAGGCAAGGAG-TAGC-----CAGCTTCGCTTTCCTTAATGGCTTTCTGAATTTGGGGTATTGTTATCTCAT-AAGGGTTCTGACGGCCCAACAAGTTGAAGATTTTGCTCCTAGAATTATTGGTAGGATAAAAAGGAACATAC-CATGATGAATACC a score=6124.0 s hg17.chr17_random 1251364 85 + 2618010 GACTTTGCTCTTA------CTGCTGTT------------------ATGCAATTAAAGCAGCCAAATGCTGAAATAAAAA----ATCTTAACAATAAGGATTTACAGTAACG-AA- s panTro1.chr19 63553009 89 + 82489036 GACTTTGCTCTTA------CTGCTTTT------------------ATGCAATTAAAGAGGCCAAATGCTGAAATAAAAATCTCA-CTTAACAATGAGGATTTACAGTAATGAAA- s canFam1.chr9 46538768 105 - 53642819 -ATTTTGGTTTTAATTGACCTGGTTCTTGGAAGCTCAAAAAAAAAAGGCAATTTGAG--GCCAAATACGGAAGCAA-------ACTTTAACACTGAAGATCTACTATATAACAAA a score=4974.0 s hg17.chr17_random 1251449 37 + 2618010 AAATTACCCC--GTTTTT---TCTTCAGTGATGATGCAGC------CA s panTro1.chr19 63553098 45 + 82489036 AAATTATCTCGAGTTTTT---TCTTCAGTGATGATGCAGTGACAGAAA s canFam1.chr9 46539051 46 - 53642819 CAATTATCCA--GTTTTTATCTTTCCGGTGATGATGCAGCCACAGAAA a score=981.0 s hg17.chr17_random 1251486 4 + 2618010 GATT s panTro1.chr19 63553143 4 + 82489036 GATT s rn3.chr4 139741135 4 + 187371129 GATA s canFam1.chr9 46539097 4 - 53642819 GCTT a score=9934.0 s hg17.chr17_random 1251490 41 + 2618010 ---GATGAGAGAAAAAAAAAATCAACATTAGGAAACAGAATGTT s panTro1.chr19 63553150 40 + 82489036 ---GATGAGAG-GGGAAAAAATCAACATTAGGAAACAGAATGTT s mm5.chr11 106658112 32 + 121648857 ---AATAAAAAAATAAAAAAATAAAAGCTAAGAAA--------- s rn3.chr4 139741139 39 + 187371129 ---GATGAGTT--AAAAAAGACAGACATTAGGGAATAGAATATT s canFam1.chr9 46539101 42 - 53642819 AAGGGTGAGGG--AATAATAAACAACCTTAAGAAATGGAATATT a score=1829.0 s hg17.chr17_random 1251531 6 + 2618010 GATTTC s panTro1.chr19 63553190 6 + 82489036 GATTTC s rn3.chr4 139741178 6 + 187371129 AATATC s canFam1.chr9 46539330 6 - 53642819 TATTTC a score=-5177.0 s hg17.chr17_random 1251537 51 + 2618010 -CTTTGTTCTAAAAATAATCAAGTAGCCTGATTATTTTTAGCCAAAATGCAA-- s panTro1.chr19 63553196 19 + 82489036 -CTTTGTCCTA--------------------------------AAAATGCAA-- s mm5.chr11 106658144 13 + 121648857 ---------------------------------------AGCCAAATTGAGA-- s canFam1.chr9 46539336 34 - 53642819 CTACTTTTCCAAAAATAGT--------------------AGCTTGATAAGGATT a score=21575.0 s hg17.chr17_random 1251588 206 + 2618010 TATAGCAATGAAAG----AATACTTTGTGAAATGTTTAACACTGAC-----ATCTTT-----TAATGTTACTCTTTTCAGATTATTTCAACAAGCAAAGTAAGTGTCAGCAGTTTTTACT---ATAATTGCCAAATGGTATTAGGAATATTACCTTTCCTCCCTTGCTTAC---AACAAAAACAAATACAAAAATTAAAGTTATAGGTAAAGATATA----TTATCAAAG s panTro1.chr19 63553215 222 + 82489036 TATAGCAATGAAAGAATCAATACTTTGTTAAATGTTTAACACTGATGTCCAATCTTT-----TAAAGTTACCCTTTTAAGATTATTTCAACAAGCAAAATAAGTCTTAGCAGTTTTTACTTTGATAATTGCCAAATGATATTAGGAATATTACCTTTCCTCCCTTGCTTAC---AACAAAAACCAATACAAAAATGAAAGTTATAGGTAAAGATATATAATTTATCAAAG s canFam1.chr9 46539370 202 - 53642819 TAAAGC------------AATGCTTGGTGTAATGTTTAACACTGATGTTCAACCTCTAACCACAGTGTAACCC--TAAGGATTTTTACAAGGAGCACAGT-------GTTAGTTTTTCCCTTGATATTTGCCTTGTGAAAAT-TAAGTGTTA-CTTCCTACCTCTACTTACCTTACTGCAAATTTACAC-AAACTGAAAATCATGGGCAAAGAGAAT----TTATTAAAG a score=6072.0 s hg17.chr17_random 1251794 202 + 2618010 ------------------------GGGAtttttttttagacaagagtctcgctcttgtcaccaaggctggagtgcagtggcgcaatctcagctcactgcaacctccacctccggagttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggctcccaccaccatgcctgtaatcccagctaattttttgtatttttactagagacagggtttc s panTro1.chr19 63553437 157 + 82489036 TGtttttttgttgttgttttttttg----tttttttgagac-ggagtctcgctcttgtcacccaggctggagtgcagtggcacaatctcggctcagtgcaacatcca--------------------------------------------------------actcctgccaccacg--------cccagttaattttttgtatttttagtagagacagggtttt a score=2037.0 s hg17.chr17_random 1251996 21 + 2618010 gccTGGGTGACAGAGCGAGAC s panTro1.chr19 63555901 21 + 82489036 gcctgggtgacagagcgagac a score=30922.0 s hg17.chr17_random 1252017 229 + 2618010 ACCATCTCAAAGAG--TAGTGGCTATCAACCTACACTGTACAGGAGCCCT---TGGGAATTACATTTTTAAAAAAGACACATGGTGGACCCTCATGCCCCTCATCAACGAAACAGAAC---TGGGTACT-TTCCCAGATGAGGCCCATGTGCAGCCGTGATTT-ACCTTGGAACCCCATTCGGCCTTGAAGTTTGGGAGGAAAGAATTCCATTTGTAGCTCCAGCAGAGATTTATGATT s panTro1.chr19 63555922 232 + 82489036 tccatctcaaaaagaaTAGTGGTGATCAACCTATATTGTACAAGAGCCCT---TGGGAATTACATTTTTAAAAAAGACACAAGGTGGACCCTCATGCCCCTCATCAACGAAACAGAAC---TGGGTACA-TTCCCAGGTGAGGCCCACGTGCAGCCATGATTTTACCTTGGAATCCCATTCAGCCTTGAAGTTTGGGAGGAATGAATTCCACTTGTAGCTCCAGGAGAGATTTATGATT s canFam1.chr9 46541435 212 - 53642819 ACTATTCCTTAGAT--Tagtgccttccaacctggactgtacaggaagaatgtatggggattaaaatt---aaaatatcagatactgggacccca--ccccttaccaattaaacagaatttgtgggTAAACTTTCCAGGTGATGCCAACA---------------GCTTTGAAACCATGTTCAGCCTTGAAGTTTGGGAGGAATGAATTCTACTTGTAGCTT-----GAGACTTCTAATT a score=2175.0 s hg17.chr17_random 1252246 29 + 2618010 AAATTTACGGTATTTAGCCCATCTCCCTG s panTro1.chr19 63556154 29 + 82489036 AAATTTACGGTGTTTAGCGCATCTCGctg a score=11942.0 s hg17.chr17_random 1252275 65 + 2618010 GCCAAGGAGACTT-AAGGAGACACTGGCTGAGGGTTTCCAGAAAATGTTATTCA--TTCTTCTGCAAA s panTro1.chr19 63556183 65 + 82489036 gccaaggagactt-aaggagacactggctgagggtttctggaaaattttattca--ttcttctgtaaa s canFam1.chr9 46541920 68 - 53642819 gCCAGTGAGATTTAAAGGAGATATTGGCTGAAGCCTTCTGGGAAATTCTGTTCATTTTCTTATGCAAA a score=182.0 s hg17.chr17_random 1252340 2 + 2618010 AA s panTro1.chr19 63556248 2 + 82489036 aa a score=7586.0 s hg17.chr17_random 1252342 26 + 2618010 CTGCAGCCAGGACT--ACCTCTGGTTAA s panTro1.chr19 63556250 26 + 82489036 CTGCAGCCAGGACT--ACCTCTGGTTAA s rn3.chr10 96356506 26 + 110733352 CTGCAAGCAGGGCC--ATCCCTCGTCAG s canFam1.chr9 46542163 28 - 53642819 CTGCCACCAGAATTACACCTCTGGTTGG a score=16782.0 s hg17.chr17_random 1252368 57 + 2618010 TCCCATCAGTTTGGACAGGTTACCTTTCACTAGCAACATTAAAGGCCCCAAATTAGA s panTro1.chr19 63556276 57 + 82489036 TCCCATCAGTTTGGATGGGTTACCTTTCACTAGCAACATTAAAGACCCCAAATTAGA s mm5.chr11 106659689 54 + 121648857 TTCAATCAACATCTCCTATTCACCTTTCACTTCCAACAGTAA---TCTCAATTAAGA s rn3.chr10 96356532 35 + 110733352 -------------------CCACCCTTCATTTCCAACAGTAA---TCTCAAATAAGA s canFam1.chr9 46542191 57 - 53642819 TCACATTGGTTTGGTTCTGTCACCCTTCATCTGCAATCTTAAGAACTCCAAATTAGA a score=239219.0 s hg17.chr17_random 1252425 372 + 2618010 AAGCAACACATAGGCATGGTGAAGTCA---AGAAAAGGGTGG-ACTTGAATGTTTATTTACAGGATGCTGCAAGATAGGAAATTCCACA--TAGAAATTAGAAACCTAGTCAGAGGACAAGCTTCATACAGTATGTATGTACA-GTTGGAACTGTTCAAGTATAGTTTCAGT-GTAAAAAGTGCTACAG-TAACAAACCACATTTAAGAAAGAGTTCTTAGTAGAGAAACAATAAGACAA---------AATACCAAA---CGTAGTACA----CAACAAATTTATGTCTCAGCT--ACATGATCTAAAAGTTAAAGGTCCCAGGAGCCCCATCCTGAACTTGGAAAGTGTAGCCTTCAGAGGTAGTTTCTGGTACAACGTTTTGATCTTCCTCTTCCT s panTro1.chr19 63556333 370 + 82489036 AAGCAACACATAGGCATGGTGAAGTCA---AGAAAAGGGTGG-ACTTGAATGTTTATTTACAGGATGCTGCAAGATAGGAAATTCCACA--TAGAAATTAGAAACCTAGTCAGAGGACAAGCTTCATACA----GTATGTACAGGTTGGAACTGTTCAAGTATAGTTTCAGTGGTGAAAAGTGCTACAA-TAACAAACCACATTTAAGAAAGAGTTCTTAGTAGAGAAACAATAAGACAA---------AATACCAAA---CATAGTACA----CAACAAATTTATGTCTCAGCT--ACATGATCTAAAAGTTAGAGGTCCCAGGAGCCCCATCCTGAACTTGGAAAGTGTAGCCTTCAGAAGTAGTTTCTGGCACAACGTTTTGATCTTCCTCTTCCT s mm5.chr11 106659743 363 + 121648857 AAACAGC--------------AAGTCAG--AGTAAAGAATGGAACTTTAATCTTTATTTACAGGACATGACAGGGTACGAAATTCCACA--TAGAAATAA-------ATTCAGAGGAC-AGCTTCATAGA----GTATGTACAGTTTATAACTGTTCAAGTATAGTTTCTTTTGTAAAAAGTGCTACAA-TAACAAACCACATTTAA-AAAGAGTTCTTAGTAGAGAAACAGTAAGACAAATCTATGAGAACACAGAATAGCACAGCACATAGCTAACAACTTTGTGCCTTAGCTGGACAT----TAGAAGTTAAAGGTCCCAGGAGCTCCATCCTGAACTTGGAAGGCGAAGCCTTCAGAGGTAGTTTCTGGCACCACATTTTGATCTTCCTCTTCCT s rn3.chr10 96356567 365 + 110733352 AAACAGC--------------AAGGCAGGTAAAGAAGAATGGAACTTAAATCTTTATTTACAGGACACGACAGGGTACGAAATTCCACA--TAGAAATAA-------ACTCAGAGGAC-AGCTTCATAGA----GTATGTACAGTTTATAACTGTTCAAGTATAGTTTCTTTTGTAAAAAGTGCTACAA-TAACAAACCACATTTAA-AAAGAGTTCTTAGTAGAGAAACAGTAAGACAAATTTATGAGAACACAGCACAGCACAGCACATAGCTAACAACTTTGTGCTTTGGCTGGACAT----TAGAAGTTAAAGGTCCCGGGAGCTCCATCCTGAACTTGGAAGGCGAAGCCTTCAGAGGTAGTTTCTGGCACCACATTTTGATCTTCCTCTTCCT s canFam1.chr9 46542248 373 - 53642819 AAGTAATGCATAGGAACGGTGAGGTAG---AGAAAAGGGTGG-AATTTAATCTTTATTTACAGGACACTGTAAGATAGAAGATTCCACA--TAGAAATAAGCAACCCACTGAGAGGAGGAGCTTCATACA----GTTTGTACAGTTCAGAACTGGTCAAGTATAGTTTCGTT-GTAAAAAGTGCTACAA-TAACAAAACACATTTAA-AAAGAGTTCTTAGTAGAGAAACAGTAAGACAAACT------TCTACCAAA-----CAGTACACAACAAACAACTTTCTGTCTCAGCT--GTACAATCTAAAAGTTAAAGGTCCCAGGAGTGCCATCCTGAACTTGGAATGTATAGCCTTCAGAGGTAGTTTCGGGCACAACATTCTGATCTTCCTCTTCCT s galGal2.chr18 6781316 334 + 8919268 ACGCAAGACAGAGACAGTAAAAGGCCAGA-AGACAGAAGTGA-----GAAGATGTATTTACAAGA-ATGTCAGAAT---GAATTCAACAGTTAAAAATTC----------------AC----------------ATATGTACAGTTTTGAACTGTTCAAGTAT-GTTTCAGTTGGACAAAGTGCTAGAAGTCACAAAAAA-----AA-AAAGAGGGGCTATTA-AGACACAGAAGT-------------GGCAGCCATTTGTATGCCAAATGGCTTGTAGGTAGTTGCAGTGTAT--GCAGTGCCTAGAAGTTGAAAGTATCAGGAGCATTGCCCTGAATTTGGAAAGTATAGCTAGCAGCAGTAGATTCTGGTACAACACTCTGGTCCTCCTCCTCCT a score=25520.0 s hg17.chr17_random 1252797 182 + 2618010 GGaaatat-----attaaaaaataagtata-aaaatGATATAAGTA------TTCCAAGCAGCAG-CCTACCT-GAAGTCTGTATTTAATCTCTAGGTCTTGATCTGCATATTACACC-TTTAATCCTGTATGATATTATAGTATTTGACATAGAGG---AGGGAGGGTCTCTGAAACTTTGCCAATTCATAAATGCTAG- s panTro1.chr19 63556703 183 + 82489036 GGaaatat-----attaaaaaataagtata-aaaatGATATAAGTA------TTCCAAGCAGCAGCCCTACCT-GAAGTCTGTATTTAATCTCTAGGTCTTGATCTGCATTTTACACC-TTTAATCCTGTATGATATTATAGTATTTGACATAGGGG---AGGGAGGGTCTCTGAAACTTTGCCAATTCATAAATGCTAG- s mm5.chr11 106660106 118 + 121648857 GGAAATAGT--AAGGTAAGATATAACCATA-AACATGGTA----CA------TCTCTAGCAGAAC-CCTGTCTCAAAGCCTGC-----------------------------------------------------------------ACCTAGCAG---AAAACTTGTTGCCAAAGCTTAGCTAACTCATGAATGCTGG- s rn3.chr10 96356932 118 + 110733352 GGAGATAGT--AAAACAAGATATAACCATA-AATGTGGTA------------------GCAGAAC-CCTGTCTCAAAGCTTGCACTGC------------------------------------------------------------ACTTAGCAGAACAAAACTGGCTGCCAAAGCTTAGCTAATTCATGGGTGCTGG- s canFam1.chr9 46542621 197 - 53642819 GGAAGTATTAAAAAACAAAACCAAACAATATAATTTCACACACATAGCACATTTCTAGGAAGTAG-CCTGCCTAGAAGTCTCTATTTACTCTTAAGGTCTTCATCTGCATATTATACTAATCAATGCCGTACCATATTTCAGTATTTGAAATAGTGG---AGGGAAAGCTGCTGAAAACTTGCCAATTCAGGAGCGCCTGG a score=7586.0 s hg17.chr17_random 1252979 65 + 2618010 ----------CTACTACAGTAACACAAACAGGCCG-------AGA-TTTTTTTCTTCCCCAACCGTCACTTTTCAATAGGAAA s panTro1.chr19 63556886 66 + 82489036 ----------CTACTACAGTAACAGAAACAGGCTG-------AGATTTTTTTTCTTCCCCAACCGTCACTTTTCAATAGGAAA s canFam1.chr9 46542818 79 - 53642819 GAGATGGAAGATTCCGAATGGACTAAGGAATGCTACCACAGCAGA----CTTTCTTCCCCACCTGTCACTTTTCCATAGGAAA a score=24402.0 s hg17.chr17_random 1253044 147 + 2618010 AGACTG--TATTAGGCCCAGAGCATGGTGATGAGTTTGGCCTACTTCTCTATCACCTCCTACAATGACACCCGTTAACTTACCCTCAAGATATTCTAAGATTCTCAAGGTTGTTCATTTGAAACTAATC-TGGTGACTTTTAAAA------TCTCA s panTro1.chr19 63556952 147 + 82489036 AGACTG--TATTAGGCCCAGAGCATGGTGGTGGGTTTGGCCTACTTCTCTATCACCTCCTACAATGACACCCGTTAACTTACCCTCAAGATATTCTAAGATTCTCAAGGCTGTTCATTTGAAACTAATC-TGGTGACTTTTAAAA------TCTCA s canFam1.chr9 46543118 146 - 53642819 AGATGGCCTATTAGCCCCAGAAGATGGCAGTGGGGTTGGCCCACTTTTCCATCATCTCCTATA----------CAAACTTACTCTCAAGATACTCTAAAGTCCTTAAGACTGTTCATTCTAAAGAAAGAGGGGtaatttttaaaaaatttttttta a score=151.0 s hg17.chr17_random 1253191 3 + 2618010 GTT s canFam1.chr9 46543264 3 - 53642819 att a score=16776.0 s hg17.chr17_random 1253194 100 + 2618010 TAAAA-AGATTTTATTACCATCAAGCCAAAC--TAGAGGGGCAA-----ATAAGTACATTATGTCCCATGCACACTGATATTTTACTATATTTAACAAAGATATGACA s panTro1.chr19 63558312 103 + 82489036 TAAAATAGATTTTATTACCATCAAGCCAAACATCAGAGGGGCAA-----ATAAGTACATTACATCCTATGCACACTGATATTTTACTATATTTAACAAAGATATGAGG s canFam1.chr9 46543267 107 - 53642819 tCTAA-AGATTATATGATCATCAAGCCAAATATTTAAGAAGCAAAATATATATATACATTATGTCCTACTCACACTGATATTTTGCCATATTTAACAAGGTCACAGGG a score=5601.0 s hg17.chr17_random 1253294 54 + 2618010 -CTTATTTTTAAAAG------GGA-AAAAAAGGCTTATGGCCTTGACTTTA--TG---TTTCCAAGT s panTro1.chr19 63558415 62 + 82489036 -CTCATTTTTAAAAGTATGAGGGA-AAAAAGGGCTCATGGCCTTGGCTTTACATG---TTTCCAAGT s canFam1.chr9 46543374 63 - 53642819 -CTCA-TTTAAAAAGTATAAGGAAGAAAAAAATCTTATGGGCTTGACTTTG--TGTATTTTCCAAAT s fr1.chrUn 119999427 46 + 349519338 CCTCCTTTTAAAACA----------ACAAAACATTAATTATCTTG--------AA---AAACCAAGT a score=2810.0 s hg17.chr17_random 1253348 10 + 2618010 TGTTATTAAT s panTro1.chr19 63558477 10 + 82489036 TGTTATTAAT s mm5.chr11 106660423 10 + 121648857 TGTTGTGGAC s canFam1.chr9 46543437 10 - 53642819 TCTTGTTAAC s fr1.chrUn 119999473 8 + 349519338 --TCATCAGA a score=-3693.0 s hg17.chr17_random 1253358 5 + 2618010 ----ATTAC s panTro1.chr19 63558487 5 + 82489036 ----ATTAC s mm5.chr11 106660433 2 + 121648857 ----AT--- s rn3.chr10 96357155 5 + 110733352 ----GTTGG s canFam1.chr9 46543447 5 - 53642819 ----TTTAC s fr1.chrUn 119999481 5 + 349519338 CCCAA---- a score=-4112.0 s hg17.chr17_random 1253363 8 + 2618010 -CATCCATT s panTro1.chr19 63558492 8 + 82489036 -CATCCATT s mm5.chr11 106660435 7 + 121648857 --GGCCATT s rn3.chr10 96357160 8 + 110733352 -TCTCCGTC s canFam1.chr9 46543452 6 - 53642819 -CAT--GTT s galGal2.chr18 6781730 8 + 8919268 -CAGCAGCC s fr1.chrUn 119999486 9 + 349519338 CTTTCAAGA a score=269399.0 s hg17.chr17_random 1253371 169 + 2618010 ACTCACCTCTACAGAGAAATACTTCTCAATTAAGCTTAACGAAGCCTTATACACAGACTCATTTTCATGGTTTTGTAGAGCTTCAATTTTGTCTAAGCCTCCACATTCTTCAATCATTATACTAAGTTTCTCAGTTTCACCTAGTTTCTCAGCAGCCT-AAAAAAAAAAA s panTro1.chr19 63558500 170 + 82489036 ACTCACCTCTACAGAGAAATACTTCTCAGTTAAGCTTAATGAAGCCTTATATACAGACTCATTTTCATGGTTTTGTAGAGCTTCAATTTTGTCTAAGCCTCCACATTCTTCAATCATTGTACTAAGTTTCTCAGTTTCACCTAGTTTCTCAGCAGCCTAAAAAAAAAAAA s mm5.chr11 106660442 170 + 121648857 ACTTACCTCCACTGAGAAGTACTTCTCAATTAAGTTCAATGAGGCCTTGTATACAGACTCGTTTTCATGCCTCTGTAGTGCTTCAATTTTATCCAAGCCTCCACACTCTTCAATCATTATACTGAGCTTTTCTGTCTCACCTAGTTTCTCTGCAGCCTTAAAAAAAAAAA s rn3.chr10 96357168 170 + 110733352 ACTCACCTCCACTGAGAAGTACTTCTCAATTAGGTTCAACGAGGCCTTGTACACAGACTCGTTCTCATGGCTCTGTAGGGCTTCAATTTTATCCAAGCCTCCACACTCTTCAATCATTATACTGAGTTTTTCTGTCTCACCTAGTTTCTCTGCAGCCTTAAAACAAAACA s canFam1.chr9 46543458 165 - 53642819 ACTCACCTCTACAGAGAAATACTTCTCAATCAAGTTTAATGAAGCTTTGTACACAGACTCGTTTTCATGGTTTTGTAGAGCTTCAATTTTGTCCAAACCCCCACATTCTTCAATCATTATACTAAGTTTCTCAGTTTCACCTAGTTTCTCAGCAGCCT-----AAAAAAA s galGal2.chr18 6781738 169 + 8919268 ACTTACTTCTGCTGAGAAGTATTTTTCAATCAGGGTGGCTGAGGCCTTGTACACCTGTTCATTTTCATGTGACTGAAGAGCTTCAATTTTGTCTAGACCTCCACACTCCTCAATCATGAGGCAAAGTTTCTCAGTCTCATTTATCTTCTCAGCAGCCTGAAAAAGACAA- s fr1.chrUn 119999495 170 + 349519338 TCCTACCTCATTAGAAAAGTATTTCTCTATCAGTTTGAGGGCTGCTTTGTAGACAGTGTCATTCTCATGACCTTGCAAAGTCTCAATTTGGTCTAGTCCACCACACTCTTCAATCATCAGGCTCAGCTTGTCTGATTCACCAATTTTATCCCCAGCCTGAGAATAAAAAA s danRer1.chr3 20233555 169 - 31142523 ACCCACCTCTCCAGAGAAATATTTTTCAATTAAGTTGAGGGAGGCCTTGTAAACCATTTCATTTTCATGAGACTGCAAAGCTTCGATTTTGTCCAGGCCACCACACTCCTCAATCATCAAACACAGCTTTTCAACCTCACCAATCTTCTCTCCAGCCTAAAAACAAAAC- a score=9011.0 s hg17.chr17_random 1253540 15 + 2618010 AAATCC-----AAGTTTACT s panTro1.chr19 63558670 15 + 82489036 AAATCC-----AAGTTTACT s mm5.chr11 106660612 20 + 121648857 AAACTCAACTTAAGTTTACT s rn3.chr10 96357338 15 + 110733352 CAATTC-----AAGTTTATT s canFam1.chr9 46543623 15 - 53642819 ATATCC-----AAGTTTAGT s fr1.chrUn 119999668 15 + 349519338 AAAACA-----ATGTTTAAT s danRer1.chr3 20233724 15 - 31142523 AAAGTT-----ATATTAACA a score=-27146.0 s hg17.chr17_random 1253555 76 + 2618010 ------------------GGCATATACTCTG---GTTTTATTTTAATGAA------GAAAACATCAATAA-----------------------TTTG---------AATATTGATACG-TCAGGC-AGAAATAAGCA s panTro1.chr19 63558685 74 + 82489036 ------------------GGCGTATACTCTGAATG-----TTTTAATGAA------GAAAACATCGAAAA-----------------------TTTG---------AATATTGATATG-TCAGGC-AGAAATAAGCA s rn3.chr10 96357353 64 + 110733352 -------------------ACCCTAACTCTA---A-TCTATTTTAAT----------AAAATACCCACAAG---------------------TGTTA---------AATATCTATG----------AGATACAAATA s canFam1.chr9 46543638 102 - 53642819 ------------------GGAATTTA--CTGAATGTTCTATTTTAATGAAAACCGTGaaaaaaaaaaaaaaaaaaaggaaaaCCGTGTTTATGTTTG---------GGTATTGATGGA-TC-----TCAGACAACCA s fr1.chrUn 119999688 85 + 349519338 ------------------GTAGTACACCACC---A-CTCATTACACATAG------CAAAATAACCAACA----------------------TATTGTCTACCATCAATAGAGAAATG-TAAAGC-AAAAATTAAAA s danRer1.chr3 20233739 91 - 31142523 GAGGAACAACAAAATAATGTCATGTTCCAGATCTA-CCTATTTGCATTAA------TGGACTATTGGAAT------------------------------------AAAAATAATGTGCTCAGACTACAAAGTA--- a score=0.0 s hg17.chr17_random 1253631 6 + 2618010 CCTAAC a score=-418.0 s hg17.chr17_random 1253631 4 + 2618010 -CCTA s panTro1.chr19 63558759 5 + 82489036 TCTTA s rn3.chr10 96357417 4 + 110733352 CCTT- s canFam1.chr9 46543740 4 - 53642819 -CTTT s fr1.chrUn 119999773 4 + 349519338 -CCCA a score=145.0 s hg17.chr17_random 1253635 2 + 2618010 AC s panTro1.chr19 63558764 2 + 82489036 AC s canFam1.chr9 46543744 2 - 53642819 AA a score=6291.0 s hg17.chr17_random 1253637 33 + 2618010 AATTCCTTCATCAAGCCTATCA--TAGTTTTATGT s panTro1.chr19 63558766 33 + 82489036 AGTTCCTTCATCAAGCCTATCA--TAGTTTTATGT s rn3.chr10 96357421 32 + 110733352 --TTCCTATGAAAGGCTTTTTAG-TTGTTTTGTGT s canFam1.chr9 46543746 35 - 53642819 AGTTCCTTCAACAACCCTATGAGATGGTTTTATTT s danRer1.chr3 20233830 28 - 31142523 AATGCATTTACTAAG-----TA--AAACTTTAAAT a score=3298.0 s hg17.chr17_random 1253670 91 + 2618010 ----------CCATTTT---ATATTTTGTTGACACTCAATGTG--------ATTGGATCTGTACCTGCTTTTAGCACTACTTCAAC--TGGAGC---CAA--AGATCTTACAATCAGTa s panTro1.chr19 63558799 88 + 82489036 ----------CCATTTT---ATATTTTGTTGAAACTCAGTGTG--------ATTGGATCTGTACCTACTCTTAGCAGTACTTCGAC--TGGAGC---CAG--AGATCTTACAATc---a s canFam1.chr9 46543781 87 - 53642819 ----------CCAGTTT---ACATTTTCAAAAAATTCAAGGTG--------ATCAGATCTATACTTGTTCTTAACA--ACTACTTC--TGTAGCTCTCAGCTAGATCTTAc-------a s danRer1.chr3 20233858 102 - 31142523 GCACAGACAGAAAGTTTGTGATGTTTCCTTAA---TTTATGCGACTAGAAAATTGGATTAATCAGTTCTTTCAGTCAATCTGAAATAACGAAGC---CAA--AGTGAGTC--------- a score=8436.0 s hg17.chr17_random 1253761 46 + 2618010 gtagctccc-aaccttttctatgtatcaaaatcatgcgggcaacttt s panTro1.chr19 63558887 46 + 82489036 gtagctctc-aaccttttgtatgtatcaaaatcacatggGCCACTTT s canFam1.chr9 46543868 47 - 53642819 gtaggtctcaaatcatttctatgaatcaaaatcacctgggcaacttt a score=1744.0 s hg17.chr17_random 1253807 19 + 2618010 taaaacaacactacattcc s panTro1.chr19 63559260 19 + 82489036 TAAAACAACACTACACTCC s canFam1.chr9 46543915 19 - 53642819 aaaaaTGTTATCATAACCA a score=5333.0 s hg17.chr17_random 1253826 62 + 2618010 agttcaactggtctgctatgggaacaggggtgtattgtttcgtaaagc-atcctatgtcatca s panTro1.chr19 63559279 63 + 82489036 AGTTCAACTGGTCTGCTATGGGAACAGGGGCGTATTGTTTCGTAAAGCGATCCTATGTCATCA a score=26843.0 s hg17.chr17_random 1253888 178 + 2618010 caaggtgtagtcaaggt-----------GTCTAAGGGCAAAGATGGCCTATGGAGTGCTAAACTAAACGTCCCCAAACAGAatgtgtgttggt-attaaggatttactggacatatggaatggtatgtaggttagttttcctttaaattttcaaccttaaagagatacataaatatctatagatgaaaaa s panTro1.chr19 63559342 178 + 82489036 GAAGGTGTAGTCAAGGT-----------GTCTAAGGGCAAAGATGGCCTATGGAGTGCTAAACTAAATGTCTCCGAACAGAATGTGTGTTGGT-ATTAAGGATTTACGGGGCATATGGaatggtatgtaggttagtttttctttaaattttcaacttttaagagatacataaatatctatagatgaaata s canFam1.chr9 46544471 179 - 53642819 caaagtgtagtcaaggtagagaaccatcgTCTAAGGACAAAGATGGCCTAAGGTGTATAAAAATAAACATCCCTGATTGGATTACTTACTGATAATCAAGAatttattaggtata-aaaatgacattgtggtt--------ttaaagtcttcaaatttta--ggatacataaatttttacagattaaata a score=30647.0 s hg17.chr17_random 1254066 120 + 2618010 aacagatttgcttcaaaat-aacttag-gggattagatgaggggaagaagaaatactggccacatactgacaaattatttatacacagtaacagatacgctagcatccattatTGAAGGCTC s panTro1.chr19 63559520 120 + 82489036 actagatttgcttcaaaat-aacttag-gggattagatgaaggaaagaagaaatactggccacatactgacaaattattTATACACAGTGACAGATACACCAGCATCCATTATTGTAGGCTC s rn3.chr10 96358245 115 + 110733352 AACTAATTTGCTTC-AAAC-AACTTAG-GAATTCTGCTGAAGACGGGTAGGAAGCCTGGCCACAT----ATAATAGATTTATACGCAGGGACAGAAACACTACTGTTCCTTACTCTAGACTC s canFam1.chr9 46544650 121 - 53642819 -atttatttgcttcaaaatcaatttagagggtttaggtaagaaggagtagaaaaataggccaaatgttgacaatttatttatgctgggtgacagatacaccaagcatcattattctagactc a score=857.0 s hg17.chr17_random 1254186 4 + 2618010 AACt s panTro1.chr19 63559640 4 + 82489036 AAtt s rn3.chr10 96358360 4 + 110733352 AACT a score=728.0 s hg17.chr17_random 1254190 8 + 2618010 tttttttt s panTro1.chr19 63559644 8 + 82489036 tttttttt a score=20461.0 s hg17.chr17_random 1254198 288 + 2618010 ttttttttttaagacag--tttcactctt--gcccaagctggagtgcaataacacaaacttggctcactgcaacttccgcttccc-----gggttcaagcgattctcctgcctcagccttctgagtagctgggattataggcgcccaccaccacacatggctaattcttgcatttttagcagagacagggtttcgccatgttggccaggctggtctcgaactcttgacctcaggtgatccacccacctcggacttc---caaagtgctgtgattacaggcatgagccaccgtgcctggcc s panTro1.chr19 63560099 300 + 82489036 ttttttttttgagacagagtttcactctttcgcccaggctggagtgaagtgacgcaatcttggctcactgcaacctccgccccccacccagagttcacacgattctcctgcctcagcctcccaagtagctgggattataggcgtctgccaccaggcctggctaatttttgtatttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaggtggtccactcacctcagcctcctcccaaagtgctaggattacaggcatgagccactgtgcccggcc a score=273.0 s hg17.chr17_random 1254486 1 + 2618010 A s panTro1.chr19 63560399 1 + 82489036 A s canFam1.chr9 46544913 1 - 53642819 A a score=12352.0 s hg17.chr17_random 1254487 68 + 2618010 AGTCATT---CAAATTTAATGTCACCAAAAATCGGTATGAAATTGGGAAATTAAA-----TCAAC----CAAGTAAACAG s panTro1.chr19 63560400 68 + 82489036 AGTCATT---CAAATTTAATGTCACCAAAATTCGGTATGAAATTGGGAAATTAAA-----TCAAC----AAAGTAAACAG s canFam1.chr9 46544914 73 - 53642819 AGTCATC---AAAATTTAATTTCACCATAATTCAGTAGGACATTGAAGAATTAAAGATTTCTGAC----AAAATAGATAG s danRer1.chr3 20234037 73 - 31142523 AGTCATTTTGCAAGATTAGCAT--CCAGAGATTTAGAGTAGTCGGGCCAATTACA-----TCAACCTCACCAGTTAACAG a score=10907.0 s hg17.chr17_random 1254555 98 + 2618010 GTGTGA--TGAGTCCACATA---------AGCGCCTGACTCCGATTCAGGTCACACCATCCACTTGTCGTCTCTTTTGTATCTTTTATAATGCC-TGCCTCATTTTTAAT s panTro1.chr19 63560468 98 + 82489036 GTGTGA--TGAGTCCACATA---------AGCGCCTGACTCCAATTCAGTTCGCACCATCCACTTGTCATCTCTTTTATATCTTTTATAATGCC-TGCCACATTTTTAAT s canFam1.chr9 46544987 94 - 53642819 GAATGAATTGTGTCCACATA---------TGGACTTGATTTAAATTCAGGT-----CATCCCCTTGTCATCTCCTTTAAATCTCTTATAATCCCTTGTCACGTCTT--AC s danRer1.chr3 20234282 103 - 31142523 GTCTG---TAAATGCACACATGACAGAAGAGCTACTGAACACA---CAAGTGGCAACATGTGACAAACTTCTTAGAGAAAAATTTAATAAAATC-TGATTCACTCCTTAT a score=0.0 s hg17.chr17_random 1254653 25 + 2618010 CAAAGGGGTGGCCACATAAACAGGC a score=2858.0 s hg17.chr17_random 1254653 13 + 2618010 CAAAGGGGTGGCC s panTro1.chr19 63560566 13 + 82489036 CAAAGGGGTGGCC s canFam1.chr9 46545081 13 - 53642819 CAAGAGTGTGGCC a score=4771.0 s hg17.chr17_random 1254666 12 + 2618010 ACATAAACAGGC s panTro1.chr19 63560579 12 + 82489036 ACATAAACAGGC s mm5.chr11 106661197 12 + 121648857 ACACAAACAAAC s canFam1.chr9 46545095 12 - 53642819 ACATAAGCAGCC a score=4329.0 s hg17.chr17_random 1254678 30 + 2618010 TTTCTGATTCTGTGGCTTACTAGTGAG-TAA s panTro1.chr19 63560591 30 + 82489036 TTTCTGATTCTGTGGCTTACTAGTGAG-TAA s mm5.chr11 106661209 25 + 121648857 ---CTGATTCT---GACTATTAGTAAACCAA s canFam1.chr9 46545107 27 - 53642819 TTTCTAATTCTGTGGCCTAC---TGAG-CAA s danRer1.chr3 20234385 30 - 31142523 TTTGAGATGTAGCAGTCGAGATGAAAA-TCA a score=4280.0 s hg17.chr17_random 1254708 36 + 2618010 ACTTACAGCTGCCCTCCCCCAAGT-CTAAATAGTAAA s panTro1.chr19 63560621 36 + 82489036 ACTTACAGCTGCCCTCCCCCAAGT-CTAAATAGTAAA s mm5.chr11 106661234 34 + 121648857 ACTT--AGCTGTCCTCTTCCCAGTCCTAAATAGTAA- s rn3.chr10 96359549 35 + 110733352 ACTAAGAATT-TCCTCTTCTGAGTCCTAAATAGTAA- s canFam1.chr9 46545134 33 - 53642819 ACTT--AGCTGCCCTCCCGTGGGT-TAAAATATCAT- s danRer1.chr3 20234415 31 - 31142523 -TCTATACTTGGTTTCAATAAGAT-CAATAAAA---- a score=6078.0 s hg17.chr17_random 1254744 29 + 2618010 -CTGATTATTATCAAGTCCAAATT---CAAACA s panTro1.chr19 63560657 29 + 82489036 -CCAATTATTATCAAGTCCAAATT---CAAACA s mm5.chr11 106661268 26 + 121648857 --CTATCAGCCTTAAGTTCAAG-----CAAACA s rn3.chr10 96359584 26 + 110733352 --CCATCAACCTTAAGTTCAAG-----CAAACA s canFam1.chr9 46545167 28 - 53642819 --CCATTACCATCAAGGCCAAGTT---CAAATG s fr1.chrUn 120000171 32 + 349519338 -ACTATTTCCATCAACTTGAGATTTTCTGGGGT s danRer1.chr3 20234446 30 - 31142523 CTCATTTACCCTCAACTTAAAATT---GACTCA a score=0.0 s hg17.chr17_random 1254773 19 + 2618010 AAGCCACCTTGATAGGACT a score=-297.0 s hg17.chr17_random 1254773 16 + 2618010 AAGCCACCTTGATAGG s panTro1.chr19 63560686 16 + 82489036 AAGCCACCTTGATAGG s mm5.chr11 106661294 13 + 121648857 GAG---CCTTGTTAGG s rn3.chr10 96359610 13 + 110733352 TAG---TCTTGTTAGG s canFam1.chr9 46545195 10 - 53642819 CTA---CCT---TATA s fr1.chrUn 120000203 13 + 349519338 TAC---ACTTGACATA a score=2814.0 s hg17.chr17_random 1254789 3 + 2618010 ---ACT s panTro1.chr19 63560702 3 + 82489036 ---ACT s mm5.chr11 106661307 3 + 121648857 ---ACT s rn3.chr10 96359623 3 + 110733352 ---ACT s canFam1.chr9 46545205 3 - 53642819 ---ACT s galGal2.chr18 6781993 3 + 8919268 ---ACA s fr1.chrUn 120000216 6 + 349519338 AGTTCT a score=286882.0 s hg17.chr17_random 1254792 204 + 2618010 TACCTGAAAGATATTTGAAATGGCATCCAGGATAACCAGAATAATCTTGGTATCTTTTGCAGTTAAGAGGTTCATCAACGGTTCTATTATGCCACAGTGAACAAGGTACACAATCTGTTCAACTGTTCCACCACTGGTATAGTTGGTCACGGCCCACACAGCTTCCTTTTGTGTCTTAAAATCTGCCTATTAAAC--------ATAAGGAAA s panTro1.chr19 63560705 185 + 82489036 TACCTGAAAGATATTTGAAATGGCATCCAGGATAACCAGAATAATCTTGGTATCTTTTGCAGGTAAGAGGTTCATCAACGGTTCTATTATGCCACAGTGAACAAGGTACACAATCTGTTCAACTGTTC-------------------CACGGCCCATACAGCTTCCTTTTGTGTCTCAAAATCTGCCTATTAAAC--------ATAAGGAAA s mm5.chr11 106661310 212 + 121648857 TACCTGAAAGATATTTGAAATGGCGTCAAGAATAACCTGAATAATCTTGGTATCTTTTGCACTCAGGAGGTTCATCAAAGGTTCTATTATCCCACAGTGAACGAGATACACAATCTGCTCAACAGTCCCACCGCTGGTATAGTTGGTTATAGCCCACGCGGCCTCCTTCTGTGTCTTAAAGTCCGCCTGATAAACAAGAAAGAAGAAGAAAA s rn3.chr10 96359626 205 + 110733352 TACCTGAAAGATATTTGAAATAGCATCAAGAATAACCTGAATAATTTTGGTATCTTTTGCACTCAAGAGGTTCATCAAGGGTTCTATTATTCCACAATGAACCAGATACACAATCTGTTCAACAGTCCCGCCGCTGGTGTAGTTGGTTATAGCCCATGCGGCTTCCTTCTGTGTCTTAAAGTCTGCCTGGTAAAC-------AAGAAGAAAA s canFam1.chr9 46545208 204 - 53642819 TACCTGAAAGATGTTTGAAATGGCATCTAGAATAACCAGAATAATTTTGGTATCTTTTGCAGTTAAGAGGTTCATCAATGGTTCTATTATGCCACAATGAACGAGGTATACAATCTGTTCAACTGTTCCACCACTTGTATAGTTGGTCACAGCCCATACAGCTTCCTTTTGTGTCTTAAAGTCTGCCTAATAAGC--------ATAAGGAAA s galGal2.chr18 6781996 207 + 8919268 TACCAGGAAGATATTAGAAACAGCATCCAAAATTACTAGCACAGTTTTGCTGTCTTTAGCGGTAAGGAGATTCAGTAGAGGTTCAACAACACCAGCCTGAACAAGATACACAATCTGGTCAATTGTTCCACCGCTTGTGTAGTTAGTTACAGCCCACACAGCTTCTTTTTGAGATTTGAAGTCTCCCTATGAAGG-----TTAAAAAAAAAA s fr1.chrUn 120000222 201 + 349519338 CACCATAAAGATGTTTGTAATGGCGTCCAAAATGACAAGGATTGTTTTGGCATCTTTAGAGGAAAGCAGATTCAAGAGTGGTTCCAGGACATTGGCTTGAACAAGATGAACCACCTGCTGAATGGTGCCCCCACTGGTAAAATTGGTAACAGCCCACACAGCCTCTTTCTGTGTTTTATAATCACCCTGCAGGAA-----------AACAAA s danRer1.chr3 20234476 199 - 31142523 TACCAAAAAGATATTTGTGATGGCATCTAAGATGACCAGAATAGTTTTGCTGTCCTTAGTGGAGAGCAGGTTCAACAAGGGCTCCAATACGTTGGCTTGAACTAGGTAAACCACTTGCTCTACTGTGCCCCCGCTGGTATAATTGGTCACTGCCCAAACAGCCTCCTTCTGGGTCTTGTAATCACCCTG-----C--------ATGAGGCAA a score=1690.0 s hg17.chr17_random 1254996 3 + 2618010 TGG s panTro1.chr19 63560890 3 + 82489036 TGG s mm5.chr11 106661522 3 + 121648857 TGG s rn3.chr10 96359831 3 + 110733352 TGG s canFam1.chr9 46545412 3 - 53642819 CAA s galGal2.chr18 6782203 3 + 8919268 GTG s fr1.chrUn 120000423 3 + 349519338 TGG s danRer1.chr10 10126327 3 - 25436222 AGG a score=-5549.0 s hg17.chr17_random 1254999 2 + 2618010 TT----------------------------- s panTro1.chr19 63560893 2 + 82489036 TT----------------------------- s mm5.chr11 106661525 2 + 121648857 TT----------------------------- s rn3.chr10 96359834 2 + 110733352 TT----------------------------- s canFam1.chr9 46545415 2 - 53642819 GT----------------------------- s galGal2.chr18 6782206 2 + 8919268 TT----------------------------- s danRer1.chr10 10126330 30 - 25436222 -TGGGGAGGGGGGCACAGCACAAGACAGAAT a score=1179.0 s hg17.chr17_random 1255001 35 + 2618010 TTATTTCAGAACAGTT-----GCACAAATAAGATTCCAAG s panTro1.chr19 63560895 35 + 82489036 TTATTTCAGAACAGTT-----TCACAAATAAGATTCCAAG s mm5.chr11 106661527 33 + 121648857 TTAGTCCAAA--AGTC-----CTAACAGCCAGACTCCAAA s rn3.chr10 96359836 33 + 110733352 TTAGCCCAGA--AGTC-----CCAATAGCAAGACTCCAAA s canFam1.chr9 46545417 35 - 53642819 TTAATTCAGAACAATT-----GTAAAAATAGGATCCCAAA s galGal2.chr18 6782208 28 + 8919268 AGAATACAGT------------CAACAATAATGTCTAAAG s fr1.chrUn 136434819 31 - 349519338 TCATTTGAAA----AT-----TTAATCAAATGATTTGAAA s danRer1.chr10 10126360 38 - 25436222 TTAGTTTAGC-CAGTTGCTTAGTGAAGACATTCTTCTAT- a score=-34930.0 s hg17.chr17_random 1255036 71 + 2618010 AGTACTTTTT---CAC-AAAAACAATGACTGAAAGTACCA--AG-GTTCTAT------------------C----CAACCTTAAGTAAAAGGGGTTACTG s panTro1.chr19 63560931 75 + 82489036 AGTACTTTTT---CACAAAAAACGATGACTGAAAGTACCA--AG-GTTCTAT------------------CGATACAACCTTAAGT-AAAGGGGTTACTG s mm5.chr11 106661564 59 + 121648857 AGTGGTCT---------AAAAACACCAAGCCAATTACCTA--CT-CTTCTAC------------------C----CAATATT-------AGGAGGTACTG s rn3.chr10 96359873 59 + 110733352 AGTGTTCT----------AAAACACCAAGTCAACTACCTG--CGTGCTCTAC------------------C----CAGTATT-------AGAAGGTCCTG s canFam1.chr9 46545455 67 - 53642819 ATGGTTAT----------AGAAAAACAACTCTAACTACCAACAG-ATTCCAT------------------C----TAATCTTAAGTGAAGGAGGTTACTG s galGal2.chr14 6424541 93 + 20603938 GCCACTCTTTGCACACAGTTTGGACTGGTCCACTTTCCTA--GG-GCTGGATGGACACATGGCAGAGCTGC----CAAGACCAGCTCCAAGCTGTTTTTC s fr1.chrUn 136434850 67 - 349519338 -ATATTCCAT-------TAAACAATTCAGTTAGGTTACCA--GA-ACTCCCC------------------T----AAACCATTAATATTGAACATTTCTG s danRer1.chr10 10126398 67 - 25436222 ATTACCTC----------AAAGATTTGACAATACGTGTTA--CG-GTGCACT--------------TTTGC----CAACTGGAAATGCAACTACATTC-- a score=-5732.0 s hg17.chr17_random 1255107 3 + 2618010 --GGT s panTro1.chr19 63561006 3 + 82489036 --GGT s mm5.chr11 106661623 3 + 121648857 --TAT s rn3.chr10 96359932 1 + 110733352 --T-- s canFam1.chr9 46545522 3 - 53642819 --GCC s galGal2.chr14 6424634 3 + 20603938 --CAT s danRer1.chr10 10126465 3 - 25436222 GAG-- a score=-423.0 s hg17.chr17_random 1255107 5 + 2618010 -GGTAT s danRer1.chr10 10126465 5 - 25436222 GAGAA- a score=-1803.0 s hg17.chr17_random 1255110 2 + 2618010 -AT s panTro1.chr19 63561009 2 + 82489036 -AC s rn3.chr10 96359933 2 + 110733352 -AC s canFam1.chr9 46545525 2 - 53642819 -AC s galGal2.chr14 6424640 2 + 20603938 -GA s danRer1.chr10 10126468 2 - 25436222 AA- a score=91.0 s hg17.chr17_random 1255112 6 + 2618010 TGTTCA s panTro1.chr19 63561011 6 + 82489036 TGTTCA s rn3.chr10 96359935 6 + 110733352 CGTTCA s canFam1.chr9 46545527 6 - 53642819 TATTTA s galGal2.chr14 6424642 3 + 20603938 TGT--- s fr1.chrUn 136434917 6 - 349519338 TGCTGA s danRer1.chr10 10126470 6 - 25436222 GGCCCC a score=-3083.0 s hg17.chr17_random 1255118 21 + 2618010 GC--AAAGGACTCCTAGTAGAAC----- s panTro1.chr19 63561017 21 + 82489036 GC--AAAGGACTCCTAGTAGAAC----- s canFam1.chr9 46545533 22 - 53642819 GCA-AAAGGACTCTAGGTAGAAT----- s galGal2.chr14 6424645 21 + 20603938 AC--TAAGTAACTCATGCTGCTC----- s fr1.chrUn 136434925 21 - 349519338 CC--ACATAACCTAAACTACATC----- s danRer1.chr10 10126476 26 - 25436222 --AGGAGGGACTGCTTGTATAATTGGCC a score=52.0 s hg17.chr17_random 1255139 22 + 2618010 CCAAGATTCTTG-CACGTGAAGA s panTro1.chr19 63561038 22 + 82489036 CCAAGATTCTTG-CACATGAAGA s rn3.chr10 96360148 23 + 110733352 CTAAGACTCTTGATAAGTGTCTA s canFam1.chr9 46545555 20 - 53642819 CCAATAT--TGG-CACATTAAGA s galGal2.chr14 6424666 22 + 20603938 CTCAGATCCCAG-CAGCTTCACA s fr1.chrUn 136434946 22 - 349519338 CAGGGATCCCAG-TATTTAACCA s danRer1.chr10 10126502 22 - 25436222 TCATTTTATGAG-CAGCTTTAGA a score=652.0 s hg17.chr17_random 1255161 2 + 2618010 AG s panTro1.chr19 63561060 2 + 82489036 AG s rn3.chr10 96360171 2 + 110733352 AG s canFam1.chr9 46545575 2 - 53642819 AT s galGal2.chr14 6424688 2 + 20603938 GA s danRer1.chr10 10126524 2 - 25436222 AG a score=291.0 s hg17.chr17_random 1255161 3 + 2618010 AGC s danRer1.chr10 10126524 3 - 25436222 AGC a score=375.0 s hg17.chr17_random 1255163 1 + 2618010 C s panTro1.chr19 63561062 1 + 82489036 C s mm5.chr11 106661704 1 + 121648857 C s rn3.chr10 96360176 1 + 110733352 C s canFam1.chr9 46545577 1 - 53642819 C s galGal2.chr14 6424704 1 + 20603938 G a score=-7963.0 s hg17.chr17_random 1255164 59 + 2618010 TTATCAAG--CACAGCTT-------------TCTATAAATACT---------------AAAAATGACTTGA--TTAAATCCTAAGACTTCG----- s panTro1.chr19 63561063 59 + 82489036 TTATCAAG--CACAGCTT-------------TCTATAAATACT---------------AAAAATGACTTGA--TTAAATCCTAAGACTTCG----- s mm5.chr11 106661705 54 + 121648857 TTATCACG--CATAGGTT-------------GTCATAAATGCT-------------------ATCATCTGG--TCAAA-CCTAAACTCTCA----- s rn3.chr10 96360177 55 + 110733352 TTATCAAG--CACAGGCT-------------GTCATAAATGCA-------------------TTCATCTGG--CCAAACTCTGACCTCTCA----- s canFam1.chr9 46545578 71 - 53642819 TTATCAAG--CACAGCTCTACCAAATGTCCATCCATAAATACT----------------AACATTCTTTGA--CTAAATACTAAGACTTCA----- s galGal2.chr14 6424705 61 + 20603938 CTCTTGGG--CACAGCAC-------------CTCATAACAAAG---------------CAGCACAGACTGAAGCTGAGCACTGCCCCTATG----- s fr1.chrUn 136434968 38 - 349519338 TCCTCTGC--CACAGGTC---------------------TACT------------------------------CACATTCCTGAGCTGTTC----- s danRer1.chr10 10126530 81 - 25436222 CAATCAAAGCCAAAGCAT-------------TTTATGGGGAACTCTGCGGGGGCAGAAGATAAACATGCAA--GCAAGGCATCAGTTATGACATAC a score=-123.0 s hg17.chr17_random 1255223 1 + 2618010 T s danRer1.chr10 10126611 1 - 25436222 A a score=1365.0 s hg17.chr17_random 1255223 1 + 2618010 T s panTro1.chr19 63561122 1 + 82489036 T s mm5.chr11 106661759 1 + 121648857 T s rn3.chr10 96360232 1 + 110733352 T s canFam1.chr9 46545649 1 - 53642819 T s galGal2.chr18 6782263 1 + 8919268 T a score=91.0 s hg17.chr17_random 1255223 1 + 2618010 T s fr1.chrUn 136435006 1 - 349519338 T a score=12528.0 s hg17.chr17_random 1255224 9 + 2618010 TACCTTAGA s panTro1.chr19 63561123 9 + 82489036 TACCTTAGA s mm5.chr11 106661760 9 + 121648857 TACCTTAGA s rn3.chr10 96360233 9 + 110733352 TACCTTAGA s canFam1.chr9 46545650 9 - 53642819 TACCTTAGA s galGal2.chr18 6782264 9 + 8919268 TACCTTTCT s fr1.chrUn 120000478 9 + 349519338 TACTTTCCC s danRer1.chr10 10126612 9 - 25436222 TTCCTTAGT a score=349147.0 s hg17.chr17_random 1255233 231 + 2618010 GAGAACACTGACAAGGAATGGGACTAATCCATGATTCACAACTTGCTGTATCTG---GTCCTGGCGGCCGGCTGTGATGTTTGACATTGTCCACGTAGCTTCCTTCTGAATGTTAGTTTTGGGGTTGGTGAGCAGGCT-GGGAAAGACGGCGAGTGCTCCTGCATCAATCACAACCTGAGTCTGTTCATCTGTACCAGTGACAATATTCCCTATGGCTCTTAGGGCAGGAGTCTG s panTro1.chr19 63561132 231 + 82489036 GAGAACGCTGACAAGGAATGGGACTAATCCATGATTCACAACTTGCTGTATCTG---GTCCTGGCGGCCGGCTGTGATGTTTGACATTGTCCACGTAGCTTCCTTCTGAATGTTAGTTTTGGGGTTGGCGAGCAGGCT-GGGAAAGACGGCGAGTGCTCCTGCATCAATCACAACCTGAGTCTGTTCATCTGTACCAGTGACAATATTCCCTATGGCTCTTAGGGCAGGAGTCTG s mm5.chr11 106661769 231 + 121648857 GAGGACACCAACAAGAAAGGGGACTAGGCCGTGATTCACAACTTGCTGTATCTG---GTCCTGGCGTCCAGCTGTAATGTTCGACATTGTCCATGTGGCCTCCTTCTGAATATTAGTTTTGGGGTTTGTTAGCAGGCT-GGGAAAGACTGCAAGTGCTCCTGCATCGATCACTTTCTGAGTCTGCTCATCTGTTCCAGTGACAATATTCCCTATGGCTCTTAGTGCGGGAGTCTA s rn3.chr10 96360242 231 + 110733352 GAGGACACCAACGAGAAATGGGACGAGGCCGTGATTCACCACTTGCTGTATCTG---GTCCTGGCGCCCGGCGGTAATGTTCGACATTGTCCATGTGGCCTCCTTCTGAATATTAGTTTTGGGGTTTGTCAGCAGGCT-GGGAAAGACTGCAAGTGCCCCTGCATCGATCACTTTCTGAGTCTGTTCATCTGTTCCGGTGACAATATTCCCTATGGCTCTCAGTGCCGGCGTCTA s canFam1.chr9 46545659 232 - 53642819 GAGAACACCAACGAGGAATGGGACTAATCCATGATTCACAACTTGCTGTATCTG---GTCCTGGCGACCAGCTGTGATGTTTGACATCGTCCATGTAGCTTCCTTCTGAATATTAGTTTTGGGGTTCGTTAGCAGGCTAGGAAAAGACAGCAAGTGCTCCTGCATCTATTACAACCTGAGTCTGTTCATCTGTCCCAGTGACAATATTTCCTATGGCTCTTAGTGCAGGAGTCTG s galGal2.chr18 6782273 231 + 8919268 CAGAATACCAATGAGATAAGGCACAAGGCCATGATCTACAACTTGCTGAATCTG---GTCCTGACGTCCAGCTGTGATGTTGGACATTGTCCAGGCGGCTTCTTTTTGAATGTTGTTTTTATGATGAGATAGGAGACT-TGGAAAGACAGACAGGGCTCCTGAATCAATAACAATCTGTGTCTGCTCATCAGTACCAGTAACAATATTTCCTATGGCTCTCAATGAAGGAGTCTG s fr1.chrUn 120000487 231 + 349519338 AAGCAAGTCAATCAAATATGGAACAAGGCCAGCATTGATGACCTCCTGGATCTGAGAGTCCT---TCCCTGCAGTGATATTTGACAGAGTCCAGGCTGCTTCCTTCTGAACATTGGATTTTTTATGGCACATCAGTTG-GGGGAACATGGCAAGGGTGCCTGAATCCAGCACGGCCTGCGTCTGTTCATCTGTACCAGTCACAATGTTACCGATGGCTCGCAGTGAAGGTGTCTA s danRer1.chr3 20234756 231 - 31142523 GAGAACTTCCACCAGGTACGGCACAATGCCAGCATTGATGACCTCCTGAATCTG---ATAGTCTCTGCCAGCCGTGATGTTGGAGAGAGTCCAGGACGCCTCCTTCTGAATGTTGCTCTTTTGGTGGCGCAACAGAGC-TGGGAACATGGGAAGAGCACCAGCCTCCAGCACAGCCTGCGTTTGTTCATCTGTGCCAGTGACAATGTTACCAATAGAACGTAGTGAGGGGGTCTG a score=5563.0 s hg17.chr17_random 1255464 7 + 2618010 AAAAAAA s panTro1.chr19 63561363 7 + 82489036 AAAAGGA s mm5.chr11 106662000 7 + 121648857 AAAAGGA s rn3.chr10 96360473 7 + 110733352 AAAGGAA s canFam1.chr9 46545891 7 - 53642819 AAAAGAA s galGal2.chr18 6782504 7 + 8919268 AAACAGA s fr1.chrUn 120000718 7 + 349519338 CAAGCAG a score=10160.0 s hg17.chr17_random 1255471 128 + 2618010 AAAA---------ATATGTTGA-----TGCTGG--------TTATTTTTTCCCCAGCACTTT---AGAAATTCTATACCCTAAAAGTTT--TAACAA----GAGGCCCATCATGGCCTGAA---ATAGGCAATA------TTTCAATA-TTACTATCAA--CTGATTATGC s panTro1.chr19 63561370 131 + 82489036 AAAA-----------ATGTTGA-----TGCTGG---TTACCTTATATTTTTCTCAGCACTTC---AGAAATTCTGTACTCTAAAAGTTT--TAACAA----GAGGCCCAACATGACCTGAA---ATAGGCAATA------TTTCAGTA-TTGGTATCAA--CTGATTATGC s mm5.chr11 106662007 116 + 121648857 AAAA----------TAGGTTGATTAATTACTGA--------TTAATTACTTTCCAGTGCTGCTAAAAAAATTCTCCATTCTAAAAAGTT--GTGCAA---------------------ATA---ACAGGCAGTA------TCTCAACA---GCTATCAA--CTGAGGACGC s rn3.chr10 96360480 116 + 110733352 ATAA-----------AGGTCGG-----TGCTGA--------TTAATTACCTTCCAGTGCTGCT--AAAAATTCTCCATTCTAAAAAGCT--CTGCAA-------------------CAGTA---ACAGGCAGTATATATGTCTCAACA---GTTATCAA--CTGGTCATGC s canFam1.chr9 46545898 145 - 53642819 AAAGAAAAGAAAAAAAAGTTGA-----TGCCAGTGGTTATCTTTTATTTTTTCCAGCACTGCTC-AAAAACTCTA-----TAAAGGTTC--TGACAAATCAGAGGCCCATCATGGCCTAAA---ATAGGCAATG--------TCAATTGTTAGTATCAA--CTGACCATGC s fr1.chrUn 120000725 123 + 349519338 --------------AAAGGCG------CATCAA--------TTTAAAAGTCTCAAA---------AGTGTTTTTGTACTTTGTTACATTGGTAACAA----TGTACAATTCCTAACATAAATATATTGATAGTG------GTTCTATA-ATATGTTTAAGGTAAATTTTGG a score=-1354.0 s hg17.chr17_random 1255599 2 + 2618010 --TT s panTro1.chr19 63561501 2 + 82489036 --tt s mm5.chr11 106662123 2 + 121648857 --TC s canFam1.chr9 46546043 2 - 53642819 --TT s fr1.chrUn 120000848 2 + 349519338 AA-- a score=768.0 s hg17.chr17_random 1255601 9 + 2618010 TTTTTTTTT s panTro1.chr19 63561503 9 + 82489036 ttttttttt s mm5.chr11 106662125 9 + 121648857 CCGTACTCC s fr1.chrUn 120000850 9 + 349519338 TCATCTCTT a score=91.0 s hg17.chr17_random 1255610 1 + 2618010 T s mm5.chr11 106662134 1 + 121648857 T a score=262.0 s hg17.chr17_random 1255611 8 + 2618010 TTGAGaga s panTro1.chr19 63561512 4 + 82489036 ----gaga a score=22773.0 s hg17.chr17_random 1255619 252 + 2618010 ctggagtataatggcacgatttcgggtcactgcagcctctgcctcccagattcaagcaattctcctgccttagcctcccgagtagttgagattacagacacgtgccaccatgtccagataatttccttgtatttttagtagagatgggctttcacaatgttggccaggctggtcttgaactcctgacctcaggtgatccacct--gccttggtctcccaaagtgctgggattacacaggtgtgagccaccacTA s panTro1.chr19 15737519 254 - 82489036 ctggagtataatggcacgatttcaggtcactgcagcctctgcctcccagattcaagcaattctcctgccttagcctcccgagtagttgagattacagacacgtgccaccatgtccagataatttctttgtatttttagtagagatgggctttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccccgccttggtctcccaaagtgctgggattatacaggtgtgagccaccacta a score=1211.0 s hg17.chr17_random 1255871 5 + 2618010 CCACG s panTro1.chr19 15737773 5 - 82489036 ccacg s fr1.chrUn 120000859 5 + 349519338 CCACA a score=1683.0 s hg17.chr17_random 1255876 18 + 2618010 CCCAGCCCTGATCATGCT s panTro1.chr19 15737778 18 - 82489036 cccagccCTGATCATGCT s rn3.chr10 96360596 18 + 110733352 CCCTGTACTCAGAAAGCT s fr1.chrUn 120000864 15 + 349519338 ---CAAAGTGACAAGGTT a score=-376.0 s hg17.chr17_random 1255894 7 + 2618010 TCTTATA s panTro1.chr19 15737796 7 - 82489036 TCTTATA s rn3.chr10 96360614 5 + 110733352 CATTA-- s fr1.chrUn 120000879 7 + 349519338 GAATATA s danRer1.chr3 20235026 7 - 31142523 TTTTAAA a score=-4910.0 s hg17.chr17_random 1255901 20 + 2618010 CTTATGTCCTAATCTACAAG----------- s panTro1.chr19 15737803 20 - 82489036 CTTATGTCCTAATCTACAAG----------- s rn3.chr10 96360619 5 + 110733352 ---------------ACAAA----------- s canFam1.chr9 46546050 20 - 53642819 TTAATATTTTTAGCTAAAAG----------- s fr1.chrUn 120000886 11 + 349519338 ---------CTGTGGAAAAA----------- s danRer1.chr3 20235033 26 - 31142523 -----CGTATAACTCAAGAGTTCACTACTTT a score=-1585.0 s hg17.chr17_random 1255921 5 + 2618010 -TAAAT s panTro1.chr19 15737823 5 - 82489036 -TAAAT s canFam1.chr9 46546071 4 - 53642819 -TAAA- s fr1.chrUn 120000898 4 + 349519338 -TGAA- s danRer1.chr3 20235059 5 - 31142523 CCACC- a score=-1158.0 s hg17.chr17_random 1255921 5 + 2618010 -TAAAT s canFam1.chr9 46546071 4 - 53642819 -TAAA- s fr1.chrUn 120000898 4 + 349519338 -TGAA- s danRer1.chr3 20235059 5 - 31142523 CCACC- a score=-534.0 s hg17.chr17_random 1255926 2 + 2618010 AA s panTro1.chr19 15737828 2 - 82489036 AA s mm5.chr11 106662186 2 + 121648857 CA s rn3.chr10 96360624 2 + 110733352 AA s canFam1.chr9 46546075 2 - 53642819 AA s fr1.chrUn 120000903 1 + 349519338 A- s danRer1.chr3 20235064 2 - 31142523 AA a score=432866.0 s hg17.chr17_random 1255928 291 + 2618010 CTTACCACAATTGGCAATTCAGAAGCTCCTAGAAGCTTCACAAGTTGGGGCACAACTCCTGTTTTCACCACCATGCCAATTCGTTCATTTGGACCATCAGTAAGGTAGGAAATAGCCCAGCAGGTATCTGCTAACACTTCTGGATCATCATGATGCAGGAGCCGAACTAAGGTAGGAAGAA-TCTGCTCAACAGCATCT-ATCGGGGGTGCAGGATTCTTGTTGCGGCA-AAGATTAGAAAGTGTCCAGGTAAGATTACGTAAGTAGCCACACTGGGGGAAAAAAAA-TAGGCAA s panTro1.chr19 15737830 291 - 82489036 CTTACCACAATTGGCAATTCAGAAGCTCCTAGAAGCTTCACAAGTTGGGGCACAACTCCTGTTTTCACGACCATGCCAATTCGTTCATTTGGACCATCAGTAAGGTAGGAAATAGCCCAGCAGGTATCTGCTAATACTTCTGGATCATCATGATGCAGGAGCCGAACTAAGGTAGGAAGAA-TCTGCTCAACAGCATCT-CTCGGGGGTGCAGGATTCTTGTTGCGGCA-AAGATTAGAAAGTGTCCAGGTAAGATTACGTAAGTAGCCACACTGGGGGAAAAAAAA-TAGGCAA s mm5.chr11 106662188 291 + 121648857 CCTACCACAATGGGCAGTTCAGTAGCTCCTAGAAGCTTCACAAGTTGGGGAACAACTCCTTTCTTCACAACCATCTCAATGCGCTCATTTGGACCATCAGTCAGGTAGGAAATGGCCCAGCAGGAATCTGCCAATACTTCTGGATCATTGTGGTGCAGGAGTCGAACTAACGTAGGAAGAA-TCTGCTCAACGGCGTCT-AAGGGAGGTGCAGGGTTCTTGTTTCGACA-AAGGTTTGAAAGTGTCCAGGTAAGATTACGTAAGTAACCACACTGAGGGGGAGAGAA-AAATTAT s rn3.chr10 96360626 290 + 110733352 CCTACCACAATGGGCAGTTCAGTAGCTCCTAAAAGCTTCACAAGTTGGGGAACAACTCCCTTCTTCACAACCATCTCGATGCGCTCATTCGGCCCATCAGTCAGATAGGAAATGGCCCAGCAGGAGTCTGCTAATACTTCTGGATCGTTGTGGTGTAGGAGTCGAACTAGAGTAGGAAGGA-TCTGCTCAACAGCATCT-AAGGGGGGTGCGGGATTCTTGTTCCGACA-GAGGTTTGAAAGTGTCCAGGTAAGATTCCGCAAGTAACCACACTGAGAGGAAAGAAA--AATTAT s canFam1.chr9 46546077 291 - 53642819 CTTACCACAATGGGTAATTCAGTAGCTCCTAAAAGCTTCACAAGTTGGGGCACAACTCCTGTTTTCACAACCATTTCAATCCGTTCATTTGGACCATCAGTAAGGTAGGAAATGGCCCAGCAGGTATCTGCTAATACTTCTGGATCATCATGATGCAGGAGACGAACTAAGGTAGGAAGAA-TCTGCTCAACAGCATCT-AACGGGGGTGCTGGATTCTTGTTGCGACA-AAGGTTTGAGAGTGTCCAAGTAAGGTTACGTAAGTAACCACACTGAGGGGAAAGAAA-AATGCAG s galGal2.chr18 6783097 292 + 8919268 CTTACCACTATTGGCAGTTCACCACATCCCAGCAGTTTGACAAGCTGTGGCACCAATCCAGTTTTCACAACAACTTCTATCCTGTCATTGGAACCATCTGTTAGATAGGAGAGTGCCCAGCATGTGTCTGCTAACACCTCATGATCATCATGATGCAAGAGTCGGACAAGAGTTGGAAGAA-TCTGCTCAATAGCTTCT-ATGGGTGGTGCAGGATTCTTGTTACGACA-CAAGTTTGAGAGGGTCCAGGTAACATTGCGTAAATATCCAGACTGCAAGAGTTGAAACAAACCAT s fr1.chrUn 120000904 294 + 349519338 CTCACAACAACAGATAGCTCATTAAACCCGAGCAGCTTCACCAGACGAGGAATTATCCCAGTTTGGACCACCACTTCAATACGCTCATTAGCACCGTCCGTCAAGTATGAAATAGCCCAACAGGCATCAGCAAGCACCTCGATATCATCACAATGCAGTAGACGTACGAGTGTGGGCAGGATTTTGTTGAATGGCAGCTAAAGGGGGGTGAGGGGTTCTTGTTGCGGCACAAAGTTTGACAGTGTCCAGGTGACATTTCTCAGGTAGCTGGTCTGCAATTAAATGAA-AATGCAA s danRer1.chr3 20235066 291 - 31142523 CTTACCACAATGGACAGCTCCCCAGATGCCAGTAGCTGCACCAGTCGAGGAACCACACCGGCGTTCACCACAACCTCAATGCGATCATTGGGCCCGTCGGTCAGGTAAGAGATGGCCCAGCAGGTGTCCGCAAGCACTTCTTTGTCACTGTGCTGCAGAAGGCAGATGAGTGTGGGTAGTA-TCTGTTTCACAGCCTCC-AGAGGTGGTGCAGGGTTCTTATTGCGGCA-CAGGTTTGACAAGGTCCATGTGACGTTCCTCAGGTAACCAGCCTGTAGAAGAAAAAC-TGGCTGG a score=5687.0 s hg17.chr17_random 1256219 6 + 2618010 TGAGAG s panTro1.chr19 15738121 6 - 82489036 TGAGAG s mm5.chr11 106662479 6 + 121648857 TGAGAA s rn3.chr10 96360916 6 + 110733352 TGAAAA s canFam1.chr9 46546368 6 - 53642819 TGAGAA s galGal2.chr18 6783389 6 + 8919268 TAACAA s danRer1.chr3 20235357 6 - 31142523 TCAGGG a score=226.0 s hg17.chr17_random 1256219 6 + 2618010 TGAGAG s danRer1.chr3 20235357 6 - 31142523 TCAGGG a score=100.0 s hg17.chr17_random 1256225 1 + 2618010 G s panTro1.chr19 15738127 1 - 82489036 G s mm5.chr11 106662485 1 + 121648857 G s rn3.chr10 96360922 1 + 110733352 G s canFam1.chr9 46546374 1 - 53642819 C a score=0.0 s hg17.chr17_random 1256225 5 + 2618010 GTTCT a score=1009.0 s hg17.chr17_random 1256226 4 + 2618010 TTCT s panTro1.chr19 15738128 4 - 82489036 TTCT s mm5.chr11 106662486 4 + 121648857 GCTT s rn3.chr10 96360923 4 + 110733352 GCTT s canFam1.chr9 46546375 4 - 53642819 TCCT a score=10177.0 s hg17.chr17_random 1256230 40 + 2618010 GTC--TTTTGAGAAGATGGG-GGAAATTAGAATGAAGAAGTGA s panTro1.chr19 15738132 40 - 82489036 GTC--TTTTGAGAAGATGGG-GGAAATTAGAATGAAGAAGTGA s mm5.chr11 106662490 32 + 121648857 GTC---TTTGAATAGATGGG-GAAAATAAGAGTCAA------- s rn3.chr10 96360927 39 + 110733352 GTC---TTTGAACAGATGGG-GAAAATAAGAACCAAATATTAA s canFam1.chr9 46546379 43 - 53642819 GTGTATTTTCAGGGGGTGGGAAAAAATAAGAATCAAGAAGTAA s fr1.chrUn 120001198 35 + 349519338 ----ATCATCAAAAAAC----AAACTTGAGGACAATGACATGA a score=-4173.0 s hg17.chr17_random 1256270 1 + 2618010 G- s panTro1.chr19 15738172 1 - 82489036 G- s rn3.chr10 96360966 1 + 110733352 G- s canFam1.chr9 46546422 2 - 53642819 AC s galGal2.chr18 6783431 1 + 8919268 -G s fr1.chrUn 120001233 1 + 349519338 -T a score=159969.0 s hg17.chr17_random 1256271 132 + 2618010 TAACTTTACTCATGT-TAGTAACTTACTGCTAAAGATGACATATCAGGAACTGCAAGGAGAGCCAACAGTGGGTCAACTGCACCGTACTTAATAACCAAGTCTCGGAACACTGAGCCATCACCTGAAAAAAAA s panTro1.chr19 15738173 132 - 82489036 TAACTTTACTCATGT-TAGTAACTTACTGCTAAAGATGACATATCAGGAACTGCAAGGAGAGCCAACAGTGGGTCAACTGCACCGTACTTAATAACCAAGTCTCGGAACACTGAGCCATCACCTGAAAAAAAA s mm5.chr11 106662522 121 + 121648857 -----------ATAT-TATCAACTTACTGCCAAGGTAGACAGATCGGGAACTGCAAGAAGTGCCAACAGTGGGTCAATCGCACCGTGTTTGATAACTAAGTCTCGGAAAGCTGAACCATCACCTGGGACAGAA s rn3.chr10 96360967 132 + 110733352 TGACTATACTTATGG-CATTAACTTACTGCCAAGGATGACAGATCAGGAACTGCGAGAAGTGCCAACAGTGGGTCAATTGCACCATGTTTGATAACCAAGTCTCGGAAAACTGAGCCATCACCTGGAACAGAA s canFam1.chr9 46546424 123 - 53642819 TAACT-------TAT-TAGTAACTTACTGCTAAAGATGACATATCAGGAACTGCAAGGAGAGCCAACAGTGGGTCAACTGCACCATACTTGATAACCAAGTCTCGAAAAACTGAACCATCACCT--AAAAAAA s galGal2.chr18 6783432 132 + 8919268 TACTTTAAGTAATAC-TGTAAACTTACAGCCAGAGAGGAGAGATCAGGAACAGCTAGTAGAGTCAGCAGTGGTTCAATTGCACCAAATTTAATAACTAGGTCCCTGTAGATAGAACCATCCCCTATAAAAACA s fr1.chrUn 120001234 133 + 349519338 TTGCTACTTTAACATCCAATTACTCACGTTAAATACGGATAGGTCAGGGACTGCTAGCAGGCTGAGCAGAGGGGTCACAGCTCCATGTTTAATAACTTTATCTCTAAGAGCTGATCCATCACCTAAAAAGTAA s danRer1.chr3 20237660 132 - 31142523 TAAATCCATCTATAT-AAATAACTTACAGGAAACACAGACAAATCAGGAACAGCCAGCAGAGCCAAGAGGGGGGGGATTGCACCATGCTTAATGACTCTATCCCTATACCCAGAACCATCACCTACACACACA a score=294.0 s hg17.chr17_random 1256403 1 + 2618010 -G s panTro1.chr19 15738305 2 - 82489036 AG s mm5.chr11 106662643 1 + 121648857 -A s rn3.chr10 96361099 1 + 110733352 -A s canFam1.chr9 46546547 1 - 53642819 -G s galGal2.chr18 6783564 1 + 8919268 -A s fr1.chrUn 120001367 1 + 349519338 -A a score=5326.0 s hg17.chr17_random 1256404 6 + 2618010 GCAAGA s panTro1.chr19 15738307 6 - 82489036 GCAAGA s mm5.chr11 106662644 6 + 121648857 GCGAGA s rn3.chr10 96361100 6 + 110733352 GCAAGA s canFam1.chr9 46546548 6 - 53642819 GCAAGG s galGal2.chr18 6783565 6 + 8919268 TGAAAA s fr1.chrUn 136435786 6 - 349519338 TCGAGG a score=-513.0 s hg17.chr17_random 1256410 2 + 2618010 TT- s panTro1.chr19 15738313 2 - 82489036 TT- s mm5.chr11 106662650 2 + 121648857 TT- s rn3.chr10 96361106 2 + 110733352 CT- s canFam1.chr9 46546554 2 - 53642819 TT- s fr1.chrUn 136435792 2 - 349519338 -TA a score=609.0 s hg17.chr17_random 1256412 2 + 2618010 AA s panTro1.chr19 15738315 2 - 82489036 AA s mm5.chr11 106662652 2 + 121648857 GG s canFam1.chr9 46546556 2 - 53642819 AA s fr1.chrUn 136435794 2 - 349519338 GA a score=-31.0 s hg17.chr17_random 1256414 1 + 2618010 t s fr1.chrUn 136435796 1 - 349519338 C a score=24905.0 s hg17.chr17_random 1256414 281 + 2618010 ttttttttttttttttttgagacggagtttctctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcaagccattctcctgcctcagcctc------------------aggcgcccgccaccacgcccggctaattttttgtatttttagtagaggtggggtttcactgtgttagccaggatggtctcaatctcctgacctcatgatccacccgcctctgcctcccaaagtgctgggattacaggcgtgagccaccatgcccggcc s panTro1.chr19 15738317 297 - 82489036 tttttttttttttttt--gagacggagtttctctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcaagccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaattttttgcatttttagtagaggcggggtttcactgtgttagccaggatggtctcgatctcctgacctcatgatccacccgcctctgcctcccaaagtgctgggattacaggcgtgagccaccgtgcccggcc a score=91.0 s hg17.chr17_random 1256414 1 + 2618010 t s canFam1.chr9 46546558 1 - 53642819 T a score=349.0 s hg17.chr17_random 1256695 3 + 2618010 GAG s panTro1.chr19 15738614 3 - 82489036 GAG s rn3.chr10 96361235 3 + 110733352 AAA a score=6177.0 s hg17.chr17_random 1256698 18 + 2618010 GCAAGATTAATTTTATTA s panTro1.chr19 15738617 18 - 82489036 GCAAGATTAATTTTATTA s mm5.chr11 106662766 18 + 121648857 GCAAGATTAATGAACCTA s rn3.chr10 96361238 18 + 110733352 GCAAGATTAATGAACCTA a score=91.0 s hg17.chr17_random 1256715 1 + 2618010 A s fr1.chrUn 136435806 1 - 349519338 A a score=6013.0 s hg17.chr17_random 1256716 30 + 2618010 CCTTGTCCAACA-CCATCAATTTTCAGTGAC s panTro1.chr19 15738635 30 - 82489036 CCTTGTCCAACA-CCATCAATTTTCAGTGAC s mm5.chr11 106662784 31 + 121648857 CTGTCCCAAACATCCATGTTTAGTTAGCTAC s rn3.chr10 96361256 31 + 110733352 CTATCCCAAACATACATGTCTAGTTAGCTAC s canFam1.chr9 46546567 30 - 53642819 ACTTGTCTAGCA-CCATCAATATTCAATGAC s fr1.chrUn 136435807 30 - 349519338 CCTTGACAAAAA-ACACTCGCCTTCCAAACT a score=756.0 s hg17.chr17_random 1256746 93 + 2618010 TGAATGCACCAG-------------------------CAAAAACTCCCAAACTTACTTAGATGGCCCTCTGCTGCCTTTGTAAAGACGACACTTTCATTCCTAATAAGGGCTTGAAAG s panTro1.chr19 15738665 93 - 82489036 TGAATGCACCAG-------------------------CAAAAACTCCCAAACTTACTTAGATGCCCCTCTGCTGCCTTTGTAAAGATGACACTTTCATTCCTAATAAGGGCTTGAAAG s mm5.chr11 106662815 80 + 121648857 TGAATGCACTGT-------------------------CTGTCAGACCTGTCCTAACTTCAGTAGCATTCTT------------AAATGCCTCTTCCATTCCTAATAAGGGCCT-AAAG s rn3.chr10 96361287 87 + 110733352 CGAATGCGCTGT-------------------------CAGA----CCTGCTCTAACGAAAGTATTTCTCCAGTAGCATTCTT-AAATGTCTCTTCCATTCCTAATAAGGGCCT-AAAG s canFam1.chr9 46546597 92 - 53642819 TGAGTTCACCAGTGTCCTAACGCAAACACAATACTCTCGGAAATTCCCTAACTTACTT-------------------------ATATGCCATTAGCAGCCCTGATAAGCACTG-GAAG s fr1.chrUn 136435837 72 - 349519338 TTCATGTTCAAG-------------------------CTGA---------------CCAGATGTCCCGC--ACGGCTTCATTAGGATGG---TAAAGTTTCTATTTAAAGTGT-AAAA s danRer1.chrFinished 37969965 64 - 40167097 TGAACACGACAG-------------------------CAAAAAGTTCCAATCTTATTGGT-----------------------CAATGTTTCTTCAATTGTTGCCAGG------AAAG a score=493.0 s hg17.chr17_random 1256839 5 + 2618010 CAA----GC s panTro1.chr19 15738758 6 - 82489036 CAA---AGC s mm5.chr11 106662895 5 + 121648857 CAA----GC s rn3.chr10 96361374 5 + 110733352 CAA----GT s canFam1.chr9 46546689 9 - 53642819 CAAACAAGT s danRer1.chrFinished 37970029 5 - 40167097 CAA----AA a score=-248.0 s hg17.chr17_random 1256839 14 + 2618010 CAAGCTCAAAACTT- s danRer1.chrFinished 37970029 12 - 40167097 CAAA---AAAAGTTT a score=412.0 s hg17.chr17_random 1256844 2 + 2618010 TC s panTro1.chr19 15738764 2 - 82489036 TC s mm5.chr11 106662900 2 + 121648857 AC s rn3.chr10 96361379 2 + 110733352 GC s canFam1.chr9 46546698 2 - 53642819 TT s galGal2.chr18 6784165 2 + 8919268 TC a score=8859.0 s hg17.chr17_random 1256846 7 + 2618010 AAAACTT s panTro1.chr19 15738766 7 - 82489036 AAAACTT s mm5.chr11 106662902 7 + 121648857 AAAGCTT s rn3.chr10 96361381 6 + 110733352 -AAGCTT s canFam1.chr9 46546700 7 - 53642819 AAATCTT s galGal2.chr18 6784167 7 + 8919268 CAAGCTT s danRer1.chrFinished 37970034 7 - 40167097 AAAGTTT a score=-20951.0 s hg17.chr17_random 1256853 26 + 2618010 GAC---A-----AAGTCACTATTACTTAT-AACAA s panTro1.chr19 15738773 26 - 82489036 GAC---A-----AAGTCGCTATTACTTAT-AACAA s mm5.chr11 106662909 16 + 121648857 GACACAA-----AAGCCACT--------------A s rn3.chr10 96361387 14 + 110733352 GAC---A----CAAGTCACC--------------A s canFam1.chr9 46546707 30 - 53642819 AAC---ACA--CAGGTCACTCTTACTTATGGACAA s galGal2.chr18 6784174 19 + 8919268 GGC---A------------TGCTATACAC-AGCAA s fr1.chrUn 136435910 25 - 349519338 AAT---G-----AAATCG-TGTGTCGTTT-AACAA s danRer1.chrFinished 37970041 26 - 40167097 --------GTCTAGCTTTCTCCTTATTAT-CATAT a score=1539.0 s hg17.chr17_random 1256879 3 + 2618010 GGC s panTro1.chr19 15738799 3 - 82489036 GGC s mm5.chr11 106662925 3 + 121648857 GGA s rn3.chr10 96361401 3 + 110733352 GGA s canFam1.chr9 46546737 3 - 53642819 GGC s galGal2.chr18 6784193 3 + 8919268 GTC s danRer1.chrFinished 37970067 3 - 40167097 AGT a score=-12010.0 s hg17.chr17_random 1256882 33 + 2618010 -CTTTCTTCCAA-----CTAATTACGATTAGATACATTC s panTro1.chr19 15738802 33 - 82489036 -CTTTCTTCCAA-----CTAATTACGCTTAGATACATTC s mm5.chr11 106662928 27 + 121648857 -CCTTCTT----------TAATCAC-ATTGGACACATTC s rn3.chr10 96361404 14 + 110733352 -C------------------------ATTGGACACATTC s canFam1.chr9 46546740 34 - 53642819 -ACTTCTCCCAA----CCTCAGTATGATCAGAGATAGTC s galGal2.chr18 6784196 23 + 8919268 -A---------------CTAATAACGTTCTCTTATTTCA s fr1.chrUn 120001368 33 + 349519338 -AATACTAACAA-----TTAGTTTCAATTAAATACTAAA s danRer1.chrFinished 37970070 39 - 40167097 GCTCACTCACTGAACATTTGCTTCCTTTTTTATAAATTC a score=6182.0 s hg17.chr17_random 1256915 25 + 2618010 -----------AGTCAAAAGAA-----------------CTTCAAGTCCAAGT s panTro1.chr19 15738835 25 - 82489036 -----------AGTCAAAAGAA-----------------CTTCAAGTCCAAGT s mm5.chr11 106662955 25 + 121648857 -----------AGTCCAAAGAA-----------------TTATAAGTGCAAGT s rn3.chr10 96361418 25 + 110733352 -----------AGTCCAAAGAA-----------------TTTTAAGTGCAAGT s canFam1.chr9 46546972 25 - 53642819 -----------AGTCCAAAGAA-----------------TTTTAAATCCAAGT s galGal2.chr18 6784219 42 + 8919268 -----------AGAGAAGGGAATAGGTTTGAAAGTTATGTTGCATATTGACAT s fr1.chrUn 120001401 23 + 349519338 -----------AACTGAAAG-------------------CTATGTTGTCACGT s danRer1.chrFinished 37970109 38 - 40167097 AGAGTTAGTAACACCGAGAGGACA---------------TTTCACAGTTACTC a score=492447.0 s hg17.chr17_random 1256940 304 + 2618010 ACCTGCAATGTTTCCTAGAGCCCAGACAGCTTGTTCACTGATGTGAGCATGGGGAGATGCCAACAGAGAAATGAATGCTGGGATGGCACCTCCATCTACCACAGCCTTGGTTTGTTCTGATGTCCCAGAAGCAATGTTAGTGAGTGCCCAAGCAGATTCAAACTGAATGGGACTACAATCAGTTCTGCCCAAGAAGGACACAAATTTCGGAATCAAACCAGCCCGGATTATGTTGTCTATGGGGGGCTGTTTTTCTCTGGAAAGTAGTTTCCTAAAGGGGAACAAAAAGAC--------AAA------TAAAAGTTGA s panTro1.chr19 15738860 304 - 82489036 ACCTGCAATGTTTCCTAGAGCCCAGACAGCTTGTTCACTGATGTGAGCATGGGGAGATGCCAACAGAGAAATGAATGCTGGGATGGCACCTCCATCTACCACAGCCTTGGTTTGTTCTGATGTCCCAGAAGCAATGTTAGTGAGTGCCCAAGCAGATTCAAACTGAATGGGACTACAATCAGTTCTGCCCAAGAAGGACACAAATTTCGGAATCAAACCAGCCCGGATTATGTTGTCTATGGGGGGCTGTTTTTCTCTGGAAAGTAGTTTCCTAAAGGGGAACAAAAAGAG--------AAA------TAAAAGTTGA s mm5.chr11 106662980 301 + 121648857 ACCTGCAATGTTTCCAAGAGCCCAAACAGCTTGCTCGCTGATGTGAGCATGAGGAGATGCCAAGAGAGAAATAAACGCTGGGATAGCACCTCCATCCACCACAGCTTTGGTCTGTTCAGATGTTCCAGAAGCAATGTTGGTGAGTGCCCAAGCAGACTCAAACTGAATAGGACTACAATCAGTTTTGCCCAAGAAGGACACAAATTTTGGGATCAAACCAGCCCGGATGATGTTGTCTATAGGAGGCTGTTTCTCTCTAGAAAGCAATTTCCTAAGGGAAAAGAAAAA-----------AAT------CAAAAGTTGA s rn3.chr10 96361443 310 + 110733352 ACCTGCAATGTTTCCAAGAGCCCACACAGCTTGCTCGCTGATGTGAGCATGGGGCGACGCCAAGAGAGAAATAAATGCTGGGATAGCACCTCCATCCACCACAGCTTTGGTCTGTTCGGATGTTCCAGAAGCAATGTTGGTGAGCGCCCAAGCAGATTCAAACTGAATGGGACTACAATCCGTTTTGCCCAAGAAGGACACAAATTTTGGGATCAAACCAGCCCGGATGATGTTGTCTATAGGAGGCTGCTTCTCTCTTGAAAGCAGTTTCCTAAGAGTAAAAAAAAAAAA--------AAAAAAGATCAAAAGATGA s canFam1.chr9 46546997 303 - 53642819 ACCTGCAATGTTTCCTAGAGCCCATACAGCTTGTTCACTGATGTGGGCATGGGAAGATGCCAACAGAGAAATGAATGCTGGGATAGCACCTCCATCGACCACAGCCTTGGTCTGTTCTGATGTCCCAGAAGCAATGTTAGTGAGGGCCCAAGCAGATTCAAACTGAATAGGACTACAATCAGTTCTGCCCAAGAAGGACACAAATTTTGGAATCAAACCAGCCCGGATTATGTTGTCTATGGGGGGCTGTTTTTCCCTAGAAAGCAGTTTCCTAAGGGTAAACAAAAAAAG--------AAA------C-AAAGTTGA s galGal2.chr18 6784261 304 + 8919268 ACCTGCAATATTTCCTAATGCCCACACAGCTTGTTCACTGATGTGAATGTGAGGAGAGGCCAGAAGTGAAATAAAGGCTGGAATAGCCCCACCATCTACTACCGCCTTGGTTTGCTCTGATGTGCCAGAAGCAATGTTGGTAAGCGCCCAGGCAGATTCAAATTGAATAGGACTACAGTCTGCTCTACTCAAGAAGGAGACAAATTTTGGAATCAAACCAGCCTGAATTATGTTGTCTATGGGGGGCTGCTTCTCTCTTGAAAGGAGTTTCCTAAGGAGGGATACAACAGG--------AAG------TATTATTTGT s fr1.chrUn 120001424 304 + 349519338 ACCAGCAATATTTCCAAGGGCCCATATGGCCTGTTCACTAATGTGCTGGTGAGGGGACGTGACCAGACCAATGAAGGCAGGGATGGCGCCACCCTGAACAACAGAAGCAGTCTGATCAGAAGTCCCAGATGCAATGTTAGTTAGAGCCCAGGAGGCCTCAAACTGGATTGGAGGACAGTTTGTCAGGCCCAGAAAGCCAACAAATTTGGGGATGAGACCCGCATGGATCATCTGGTCGATTGGAGGATGTTTATCCCGCGACAGTAGCTTTCTGTGGATAAGAGAGATAAT--------TCA------AAATGTTTAA s danRer1.chr3 20237877 312 - 31142523 ACCAGCGATGTTTCCAAGAGCCCAAACTGCCTGCTCGCTAATATGAGCATGTGGTGACGAGATGAGGCTGATGAATGCTGGGATTGCCCCTCCCTGGACCACGGCGCTGGTCTGGTCAGATGTTCCAGATGCAATGTTGGTCAGAGCCCAGGCCGCCTCAAACTGTATAGGAGGAGAGTCTACCAGGCTCAGGAAGCCCACGAACTTAGGAATCAGACCAGCACTGATTATGCGGTCAATAGGTGGATGTCTCTCTCTTGACAGCAACTTCCTGCATGTCAGTGTAAGAAATGAAGCTTAAA------TACAAGTTGA a score=-132.0 s hg17.chr17_random 1257244 5 + 2618010 CAGTG s panTro1.chr19 15739164 5 - 82489036 CAGTG s mm5.chr11 106663281 5 + 121648857 AGTTG s rn3.chr10 96361753 5 + 110733352 AGTTG s canFam1.chr9 46547300 5 - 53642819 AAATG s galGal2.chr18 6784565 5 + 8919268 CAGTG s fr1.chrUn 120001728 4 + 349519338 AGTT- a score=585.0 s hg17.chr17_random 1257249 3 + 2618010 --ATT s panTro1.chr19 15739169 3 - 82489036 --ATT s mm5.chr11 106663286 3 + 121648857 --ATT s rn3.chr10 96361758 3 + 110733352 --ATT s canFam1.chr9 46547305 3 - 53642819 --ATT s fr1.chrUn 120001732 3 + 349519338 GTA-- a score=1447.0 s hg17.chr17_random 1257252 6 + 2618010 AACAAA s panTro1.chr19 15739172 6 - 82489036 AACAAA s rn3.chr10 96361761 6 + 110733352 TTCAAA s canFam1.chr9 46547308 6 - 53642819 AACAAA s fr1.chrUn 120001735 6 + 349519338 ACTTGA a score=3495.0 s hg17.chr17_random 1257258 12 + 2618010 AGGAGTTTGTGT s panTro1.chr19 15739178 12 - 82489036 AGGAGTTTGTGT s canFam1.chr9 46547314 12 - 53642819 AGTAGTTTGTGT s fr1.chrUn 120001741 12 + 349519338 ATGAACTATTGT a score=20151.0 s hg17.chr17_random 1257270 165 + 2618010 -AAAAACCAATATAAAATGCAAT-------------------TCAAGAGTTTAGAACTTCAGACAA---CCTTTTAAGTAAATCACTAAAT--GCTGAGACATTCTGGAACCTAAGAGA----AGCTGAACAGATTACTTGTATGGTGCTA-TGTATGCGGTATAATTAACTACCATTTTT--CCAGAAATTAATGT s panTro1.chr19 15739190 165 - 82489036 -AAAAACCAATATAAAATGCAAT-------------------TCAAGAGTTTAGAACTTCAGACAA---CCTTTTAAGTAAATCACTAAAT--GCTGAGACATTCTGGAACCTAAGAGA----AGCTGAACAGATTACTTGTATGGTGCTA-TGTATGCGGTATAATTAACTACCATTTTT--CCAGAAATTAATGT s canFam1.chr9 46547326 146 - 53642819 -AAAAATCAATTTAAAATGCAAC-------------------TTAAGAGTTTAGAGC---------------------TAATGCACTATAT--GTTGACATATCCCGGAACTTAAG-GG----AGATGAACAGACTGGTTGCATAGTATGACCACATATGGTGTCTTTAACTACCTTTTTTCCCCCAAAATAAA--- s fr1.chrUn 151209902 174 + 349519338 AAACAATCAACCTCGCATGTAATAAAATGACATGCGGTGACATTAAGAGCTCTGCACTATATACAAAACCCTTTTGAG------ACTGAATAAACGGAGACTTCTCAGATGTCTGCAGCTGTTAGCTGTACAGA----TGGCACGGCGCTT-T----------TAAATGACATCCATCACA--GCAGCACCTTATGT a score=16112.0 s hg17.chr17_random 1257435 125 + 2618010 AGATTACCCTC--------CTTTCCATCCCTGCAGAAATCTACTCCAGATCTTGTCACTTTTTAAAAAAACTTTTCACATTCTGACAGGGTTATACTCTCA--CTGAATTTGT---------TCTGATAGTTGTGGTTAAGCAC s panTro1.chr19 15739355 123 - 82489036 AGATTACCCTC--------CTTTCCATCCCTGCAGAAATCTACTCCAGATCTTGTCACTTTTTAAAAAAAC--TTCACATTCTGACAGGGTTATACTCTCA--CTGAATTTGT---------TCTGATAGTTGTGGTTAAGCAC s canFam1.chr9 46547472 127 - 53642819 ATATTACCAATAATGGAAATTTGCTATTCCCCCAGAAAACTACTTTAGATCTTTTTACTTT-----AAAAC-----------TGACAGAATTACACTGCCATtcttaatttgtgtttccttatctactag-tgaggttaaacat a score=40157.0 s hg17.chr17_random 1257560 459 + 2618010 AttttgtttttttgaaataggatctcactccactcaggctagagtgcagtgccacgatcacagctcactgcagccttgacctcctgggctcaagtgatcctcccacctcagcctccttagtagctgggacgacaagtgtgcaccgccacacccAAGTTAttttatttatttattttttgagacagagtcttgctctgtcgccatgctggaatgcagtggcaagatctcagctcactgcaacctccgcctgctgggttcaagtgattattgtgcctgagcctcccaaacacgtgagattacaggcatgtgccaccacacccagctaataatttcttttgtagaaactggctctcaccatgttgcccaggctggtctcaaactcctgggctcaagtaaccgaccccttggcctcccaaagtgctgggattacaggcatgagccacagcgcccag-ccTAGAA s panTro1.chr19 15739478 459 - 82489036 AttttgtttttttgaaataggatctcactccactcaggctagagtgcagtgccacgatcacagctcactgcagcctcgaccgcctgggctcaagtgatcctcccacctcagcctccttagtagctgggacgacaagtgcgcaccgccacacccaggtgattttatgtatttattttttgagacagagtcttgctctgtcgccatgctggaatgcagtggcaagatctcagctcactgcaacctccgcctcctgggttcaagtgattattgtgcctgaccctcccatacacctgagattacaggcatgcgccaccacacccagctaataatttcttttgtagaaactgggtctcaccatgttgcccaggctggtctcaaactcctgggctcaagtaaccgaccccttggcctcccaaagtgctgggattacaggcatgagccacagctcccCGTTCTAG-A a score=14442.0 s hg17.chr17_random 1258019 126 + 2618010 CTTTTTAATGATAATTTACCA-TTGAAATTTTTCTTCTGCACACTGTCAAGCTATAGAACTTATTAATCCTTTCTATT-----ATATCATAAATATCCACGTATAGTGGGAGGTAAAGGTCAAATTATACTT s panTro1.chr19 15739937 125 - 82489036 CTTTTT--TAATAATTTACCATTTGAAATTTTTCTTCCGCACCCTGTCCAGCTATAAAACTTATTAATCCTTTTCATT-----ATATCATAAATATCCACGTATAGTGGGAGGGAAAGGGCAAATTAAACTT s canFam1.chr9 46547599 129 - 53642819 cttttccttcgttatttgtca-cttggattgttttttAGTACACTGTCAAAATACAGAAATTACTCATTCTTTCTGTTAATGGATGTCACAAATATTTGTATTTGATAAAAGTTAAGAGT--AAGCACACCC a score=1462.0 s hg17.chr17_random 1258145 105 + 2618010 ATCTCCTAAATGGATATATCATTCTAAATGCATGTCTCAATCCCACTTACTATTTATTTCTTCCTTCCCCTGCCAGTGACTTGA--AACATTACTTTGGTAAAAACT s canFam1.chr9 46547728 94 - 53642819 ATGTGTT---TGGGCCC----------ATGGATGTGCCAATCCCATTTACTAAGTAATTCCTCCTTTCTCTATACCAACCTTGGTTGGTGCCACCTTGACAAAAACT a score=8675.0 s hg17.chr17_random 1258316 96 + 2618010 gcttgaacccaggcattccaggccagcctgggcaaaatagcaagg-cctcccctctcaaaaaaattaataaataaaaaaTACTATTTGGCTTATGGC s panTro1.chr19 15740237 97 - 82489036 gcttgaacccaggcattccaggccagcctgggcaaaatagcaagggcctcccctctcaaaaaaattaataaataaaaaATACTATTTGGCTTATGGC a score=273.0 s hg17.chr17_random 1258412 1 + 2618010 T s panTro1.chr19 15740334 1 - 82489036 T s canFam1.chr9 46547954 1 - 53642819 T a score=2535.0 s hg17.chr17_random 1258413 26 + 2618010 GGCTGGCCTAATCTTTCCT---TGTACTA s panTro1.chr19 15740335 26 - 82489036 GGCTGGCCTAATCTTTCCT---TGTACTA s canFam1.chr9 46547955 25 - 53642819 GACCAACTTAA-CCTTCAT---TTTACTG s galGal2.chr14 6427533 26 + 20603938 GGCTAGCAGGTTCCTTCCCCAGTGCA--- a score=3692.0 s hg17.chr17_random 1258439 32 + 2618010 TCTGTCTGTCCCTTCCTGCCCCACCCCCCCAA s panTro1.chr19 15740361 32 - 82489036 TCTGTCTGTCCCTTCCTGCCCCACCCCCCCAA s mm5.chr11 106663649 28 + 121648857 TCCCTCCCTCCCTCCCTCCCTCCCTCCC---- s canFam1.chr9 46547981 23 - 53642819 GCCATCTGTCTCTTTC---------CCATCAA s galGal2.chr14 6427559 31 + 20603938 GCTTACTGTGCCTTCA-GTGCCCCCCAAGCAG a score=395.0 s hg17.chr17_random 1258471 5 + 2618010 AAAAA s panTro1.chr19 15740393 5 - 82489036 AAAAA s canFam1.chr9 46548004 2 - 53642819 AA--- s galGal2.chr14 6427590 5 + 20603938 GAACA s fr1.chrUn 120001878 5 + 349519338 AAAAA a score=2966.0 s hg17.chr17_random 1258476 44 + 2618010 ----AATCTAAAAA---CACAAATTTCTTAGGC--TACCCATGCTATCGCAGA s panTro1.chr19 15740398 44 - 82489036 ----AATCTAAAAA---CACGAATTTCTTAGGC--TACCCATGCTATCCCAGA s mm5.chr11 106663677 41 + 121648857 ------TCTCAAAG---GGCTGATTTCTTAGGT--TATCCATGCCAGAGCTA- s rn3.chr10 96362068 44 + 110733352 ----AGTTTAAAAG---GGCTAATTTCTTGGGT--TGCCCACACCAGAAGAAT s canFam1.chr9 46548006 44 - 53642819 ----AATCCTAAAG---GGCTGATATCTTAGGT--TACCCATGCTATAGCAGA s galGal2.chr14 6427604 43 + 20603938 ----GGCCCCAAAACCCCACAGCAGCCCCATCC--CTCCCATCAGGCAG---- s fr1.chrUn 120001883 45 + 349519338 GACGTATTCAAAAA-------AGATCCGTGGACAATGTCCA-GTTTTCGTGGA a score=0.0 s hg17.chr17_random 1258520 3 + 2618010 CAA a score=-1161.0 s hg17.chr17_random 1258520 3 + 2618010 C--AA s panTro1.chr19 15740442 3 - 82489036 C--AA s mm5.chr11 106663718 2 + 121648857 ---CA s rn3.chr10 96362112 5 + 110733352 CTATA s canFam1.chr9 46548050 3 - 53642819 A--AA a score=2865.0 s hg17.chr17_random 1258523 2 + 2618010 GA s panTro1.chr19 15740445 2 - 82489036 GA s mm5.chr11 106663720 2 + 121648857 GA s rn3.chr10 96362117 2 + 110733352 GA s canFam1.chr9 46548053 2 - 53642819 GA s danRer1.chr3 20238230 2 - 31142523 GA a score=77.0 s hg17.chr17_random 1258523 3 + 2618010 GAC s danRer1.chr3 20238230 3 - 31142523 GAA a score=1500.0 s hg17.chr17_random 1258525 1 + 2618010 C s panTro1.chr19 15740447 1 - 82489036 C s mm5.chr11 106663722 1 + 121648857 C s rn3.chr10 96362119 1 + 110733352 C s canFam1.chr9 46548055 1 - 53642819 C s galGal2.chr18 6785166 1 + 8919268 C a score=145684.0 s hg17.chr17_random 1258526 108 + 2618010 TTACCTGGCAGCTTGAGTAGCTTGGAGCTGATTTTCCACATTGCTGCTATTTATGCCTTTGACAATGTCATCAACAGACCAATTTACAGTGCCC-TAGAAGAAAAGTGA s panTro1.chr19 15740448 108 - 82489036 TTACCTGGCAGCTTGAGTAGCTTGGAGCTGATTTTCCACATTGCTGCTATTTATGCCTTTGACAATGTCATCAACAGACCAATTTACAGTGCCC-TAGAAGAAAAGTGA s mm5.chr11 106663723 108 + 121648857 TCACCGAGCAGCTTGAGTAGCTTGGAGCTGGCTTTCCAAATTGTTACTGTTTATGCCTTTAACAATGTCCTCAACAGACCAATTTACAGTACCC-TTAAAAAAATGCAG s rn3.chr10 96362120 108 + 110733352 TTACCGAGCAGCTTGAGTAGCTTGGAGCTGGCTTTCCAAATTGTTACTGTTTATGCCTTTAACAATGTCCTCAACAGACCAATTTACAGTACCC-TAAAAAAAAAAAAA s canFam1.chr9 46548056 108 - 53642819 TTACCTAGCAGCTTGAGTAGCCTGGAGCTGGCTTTCCAAATTGTTGCTATTTATGCCTTTGACAATGTCATCAACAGACCAATTTACAGTGCCC-TGCAAGGAGAGTGT s galGal2.chr18 6785167 104 + 8919268 TTACCTGGCAGCTTGAGTAGCCTGCAATTGAAGCTCCATATTATTGCTATTAACTCCTTTGACTATTTCTTCAACAGACCAGTGTGCAGAAACC-TGTACAGAAA---- s fr1.chrUn 120001928 108 + 349519338 TTACCTGGCTGCCTGCGTGGCCTGCAGCTGCAGCTCGGGACTGTCACTGGTGACCCCGGCCACAATCTCTTCCACAGTCCACTGCTTGGTGGCC-TTAAGAGAAGGCGA s danRer1.chr3 20238233 107 - 31142523 TTACCTGGCAGCTTGTGTGGCCTGGACTTGAGTCTCCAAGTTATTACTATTCACACCATTTACAATCTCCTCCACTGTCCAGT--GCTGTGCCTGTATGAACAGAATGG a score=920.0 s hg17.chr17_random 1258634 33 + 2618010 -AA---------GT--TTGCACATTATC---ATTAAGATTAAATACAA s panTro1.chr19 15740556 33 - 82489036 -AA---------GT--TTGCACATTATC---ATTAAGATTAAATACAA s mm5.chr11 106663831 32 + 121648857 -TA---------TT--TTACA-ATTATT---ATTATATACAAATATAT s rn3.chr10 96362228 42 + 110733352 -AAAAGCAGTATTT--TTACAAATTATT---ATTTTTACCAAATACAA s canFam1.chr9 46548164 38 - 53642819 -GA---------CTAATTTCAAATGATCTCTTTTAAGATTAAATATAA s galGal2.chr18 6785271 30 + 8919268 -AA---------GT--TC---CATGAGC---ACTTTGCTGGAAGACGC s danRer1.chr3 20238340 30 - 31142523 AGA---------TT--TT----ATGAGG---TGTAACATTGAAGGCAA a score=2563.0 s hg17.chr17_random 1258667 3 + 2618010 ACA s panTro1.chr19 15740589 3 - 82489036 ACA s mm5.chr11 106663863 3 + 121648857 ATA s rn3.chr10 96362270 3 + 110733352 ATA s canFam1.chr9 46548202 3 - 53642819 GCA s galGal2.chr18 6785301 3 + 8919268 ACA a score=4491.0 s hg17.chr17_random 1258670 11 + 2618010 ATAAAATCCAC s panTro1.chr19 15740592 11 - 82489036 ATAAAATCCAC s rn3.chr10 96362328 11 + 110733352 ATAAAATCAAC s canFam1.chr9 46548205 11 - 53642819 ATAAAATCCTT a score=2493.0 s hg17.chr17_random 1258681 13 + 2618010 ACTTAC--TTGTGAA s panTro1.chr19 15740603 13 - 82489036 ACTTAC--TTGTGAA s canFam1.chr9 46548216 15 - 53642819 ACTTGCCATTGTGAA a score=91.0 s hg17.chr17_random 1258693 1 + 2618010 A s rn3.chr10 96362821 1 + 110733352 A a score=56994.0 s hg17.chr17_random 1258694 197 + 2618010 GGCAAGTGTAAACAT--CGTTAGGCTTATAGCCAGCTACTAAATATTTAGCCCTACATTTAATTTTGCCTGTTAAAT----ATTCATTATTTTATATGT---AGAACAGTTTCCAAACTTGTTGTCATGGACTCACTGGAGTCTCAAGTTATGGAG---TATCCAAGTG-----TTTTGTCGCTAAAAAAGGCAGCTTTGAACAATTTTAAAAA s panTro1.chr19 15740616 196 - 82489036 GGCAAGTGTCAACAT--CGTTAGGCTTATAGCCAGCTACTAAATATTTAGCCCTACATTTAATTTTGCCTGTTAAAT----ATTCATTATTTTATATGT---AGAACAGTTTGCAAACTTGTTGTCATG-ACTCACTGGAGTCTCAAGTTATGGAG---TATCCAAGTG-----TTTTGTCGCTAAAAAAGGCAGCTTTGAACAATTTTAAAAA s mm5.chr11 106664222 181 + 121648857 GGC-ATTGTAAGGAT--ACTTAGGCTCTCATCT--------GAAGGTTAGCTTTACATTTAATTTGGACTACTAAAT--------CCTGCTTTATATGTACAATAATAGTTCTCAAACTTGGTCCCATG-A--CATTGGATTCTCAAGTCA--GAA---CACTTAAGC------TTTTGTCATTAGAAGGAGTAGCAGTGAACTATTTTAAGAA s rn3.chr10 96362822 189 + 110733352 TGCCACTGTAAAGATGCTCTCAGGCTCTTAGTCGGTCACTGAAAGGTAACCTTTACATTTAATCTGCACCACTAAAT--------CCTCATTTATATGT---ACAACAGTTCTCTAACTTGGTACCATG-A--CACTGGA--CTCAAGTCA--GAA---CACCCAACTTAACGCTTTTGTCAC----ACCAATAGCTGTGAACCACTTTATGAA s canFam1.chr9 46548231 189 - 53642819 ----------GACAT--TTTTAGATTTATAATCAGGTACTAAAAGTTTAGCCTTACATTTAATTTTGGCTATCAATCAATTATTCATGGTTTTGTATGC---AGAATAGTGCCAAAACTTGGTAT-ATG-ACTCACTGGAATCTCCAGTTGTGGAGTATCATCCCAGCA-----TCTCATCAGTAAAAGGAG--ACTGCAAACAATTTAATAA- a score=1119.0 s hg17.chr17_random 1258891 4 + 2618010 ATGA s panTro1.chr19 15740812 4 - 82489036 ATGA s canFam1.chr9 46548420 4 - 53642819 ATGA a score=13702.0 s hg17.chr17_random 1258895 154 + 2618010 ACGAGAAGGAcaggcatggtggctcacacctgtaagcctagcactttgggaggctcaggagggaggatggcttgagctcaggtgagaccagcctgagcaacacagtgagacctcccaacaaaaaaaaaaaaaaaaaaaaaaTATCCAGGCATGG s panTro1.chr19 15740816 152 - 82489036 ATGAGAAGGAcaggcatggtggctcacacctgtaagcctagcactttgggaggctcaggagggaggatggcttgagctcaggtgagaccagcctgagcaacacagtgagacctcccaa--aaaaaaaaaaaaaaaaaaaaTTATCCAGGCATGG a score=1779.0 s hg17.chr17_random 1259049 45 + 2618010 TGGTGTTTGCCTGTCGCCATACAAGACCTTGTCTCAAAAATCAAG s panTro1.chr19 15740968 45 - 82489036 TGGTGTTTGCCTGTCGCCATACAAGACCTTGTCTCAAAAATCAAG s mm5.chr11 106664403 4 + 121648857 TGGT----------------------------------------- a score=23348.0 s hg17.chr17_random 1259094 97 + 2618010 AATCAGAGCAGACTGAAGATTATTTCTACGTTAGTCTCAATCACTTGCATTCAGATATACTTTG---AGGGAGAAAGACATGAAGT--CATAGGCAACGTTC s panTro1.chr19 15741013 97 - 82489036 AATCAGAGCAGACTGAAGATTATTTCTACGTTAGTCTCAATCACTTGCATTCAGATATACTTTG---AGGGAGAAAGACATGAAGT--CACAGGCAACGTTC s mm5.chr11 106664407 89 + 121648857 --TTAAGGCAAACTAAATGCTATTC-----TTAGTTGCAATCCCTTGAACTCAAATATACTTTTAACAAAGAAAGATATATGCAGC--TACAGATG----TC s canFam1.chr9 46548424 96 - 53642819 AATTCAAGCAGTCTGAAGACTGGTCCTAC---AGTCTCAATCACTTGCATTTAGATATGCTGTT---AGGAAGAAAGGGATGGAGTTATATAGGCAGTGTGC a score=1202.0 s hg17.chr17_random 1259191 5 + 2618010 TGAGG s panTro1.chr19 15741110 5 - 82489036 TGAGG s mm5.chr11 106664496 5 + 121648857 TGGGG a score=55166.0 s hg17.chr17_random 1259196 602 + 2618010 Attttcttttctttttttttttgagacggagtttcactcaatccccaggctggagtgcagtggcatgatcttggctcaccaccacctccgcctcctgggttcaagcaattctcctgcctcagcctcccaagtacctgagattataggcatgcgccaccatgcctggctaattttttttttttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactgccaacctcaggtgatccacctgcctcagcctcccaaagtgctggaattacaggcatgagctaccatgcccgacttttttttttggagacagagttttgctcttcttgcccaggctggagtgcaatggcgtgatctcggctcaccaccgcctccacctcccgggttcaagcgattctcctgccacagcctcctgagtagctgggattacaggcatgcgccacgatgcccagctaattttgtatttttagtagagatggagtttctccatgttggtcaggctggtctcaaactcccgacctcaggtgatccacctgcctcggcctcccaaagtaatgggattacaggtgtgagccaccacacccggcc s panTro1.chr19 15741115 597 - 82489036 Attttcttttcttttttt----gagacggagtttcactcaatccccaggctggagtgcagtggcatgatcttggctcaccaccacctccgcctcctgggttcaagcgattctcctgcctcagcctcccaagtacctgagattataggcatgcgccaccatgcctggctaattttttttttt-gtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactgccaacctcaggtgatccacctgcctcagcctcccaaagtgctggaattacaggcatgagctaccatgcccgacttttttttttggagacagagttttgctcttcttgcccaggctggagtgcaatggcgtgatctcggctcaccaccgcctccacctcccgggttcaagcgattctcctgccacagcctcctgagtagctaggattacaggcatgcgccaggaagcccagctaattttgtatttttagtagagatggagtttctccatgtttgtcaggctggtctcaaactcccgacctcaggtgatccacccgcctcggcctcccaaagtaatgggattacaggtgtgagccaccacacccggcc a score=3274.0 s hg17.chr17_random 1259798 15 + 2618010 GAGGATTTTCATATC s panTro1.chr19 15741712 15 - 82489036 GAGGATTTTCATATC s canFam1.chr9 46548521 15 - 53642819 GGAGATTTTCATATG a score=4293.0 s hg17.chr17_random 1259813 13 + 2618010 TAATTTTATAATC s panTro1.chr19 15741727 13 - 82489036 TAATTTCATAATC s mm5.chr11 106664709 13 + 121648857 TTATGTTGTAATC s canFam1.chr9 46548536 13 - 53642819 TAAGCTTATAATC a score=6859.0 s hg17.chr17_random 1259826 51 + 2618010 TACATATTTCCACGGTTAAGTGTTGCTGCAAATATAAATGGTTTATGTTTg s panTro1.chr19 15741740 51 - 82489036 TACATATTTCCACGGTTAAGTGTTGCTGCAAATATAAATGGTTTATGTTTg s canFam1.chr9 46548549 44 - 53642819 TATGCATTTCCATAGTACAGGGCTAC-------AAAAATGTTTCATGTTGT a score=75150.0 s hg17.chr17_random 1259877 811 + 2618010 gctgggcgaagtggctcgcgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggtcaggagttcgagaccagactgggaaacacggtgaatccccgtgtctactaaaaacgcaaaaattagctagacatcgtggtgatcccctgtgatcccagctacttgggaggctgaggcaggagagtcacttgaacccaggagacggaggctgcagtcagccaagatcgtaccactgcactccagcctgggcaacaaaccaaggttttgtctcaaaacaaaaaaaaaaGGAAGCATATTGTGAGAAAAACATGTAGGAAAGGGCCCAGATGAAAGATAAATTTGAAAATCTAAGTTAAGTCTACTTTATGGAAGGCCTTCATAGAGTAGGGAtttcttagagacagggtctcactgtcacccagcatggggtgcagtggtgcaatcacagctcactgcagcctcaaaatcccgggctcaagtgattcttctgtctcagccccctgaatacctaggactaaaggccggcgccaccacacccagctaactttactttttatagagacgaggtcttcctatgttgcctaggctgggctcaaactcctggcctccagtgatcctcccatttcagcttcccaaagtgttggaattacaggcatgaaccaccatgcccagctGGAGTATGGAtttatttt-atttttatttttttccttgagacggagtttcactcttgttgcacaggctggagtgcaatggcatgatcttggctcactgcaacctccacctcccaggttcaagcaattT s panTro1.chr19 15741791 811 - 82489036 gctgggcgaagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcgagaccagactgggaaacacggtgagtccccatgtctactaaaaatgcaaaaattagctagacatcgtggtgatcccctgtgatcccagctacttgggaggctgaggcaggagagtcacttgaacccaggagacggaggctacagtcagccaagatcgtaccactgcactccagcctgggcaacaaaccaaggttttgtctcaaaacaaaaaaaaa-GGAAGCATATTGTGAGAAAAACATGTAGGAAAGGGCCCAGACGAAAGATAAATTTGAAAATCTAAGTTAAGTCTACTTTATGGAAGGCCTTCATAGAGTAGGGAtttcttagagacagggtctcactgtcacccagcatggggtgcagtggtgcaatcacagctcacggcagcctcaaaatcccgggctcaagtgattcttctgtctcagccccctgaatacctaggactaaaggccggcgccaccacacccagctaactttactttttatagagacgaggtcttcctatgttgcctaggctgggctcaaactcctggcctccagtgatcctcccatttcagcttcccaaagtgttggaattacaggcatgaaccaccatgcccagctGGAGTATGGAtttatttttatttttatttttttccttgagacggagtttcactcttgttgcccaggctggagtgcaatggcatgatcttggctcactgcaacctccacctcccaggttcaagcaattT a score=32081.0 s hg17.chr17_random 1260688 176 + 2618010 GGAGTATGG----------------ATTTTAAGGAGCGAAAACACAGGTCTAAAGCAGTA-CTTCAGGAAAAATTTCAGGAAAATAGTATATGGCATAAA--GAAGGATATGATAAATTAGGAGGCTACTGTAAATATTTCAGAAGG--AAAGTCCTGAACAAAGCTGGTGACAAATACAAAAACATAGAGAATACC s panTro1.chr19 15742602 176 - 82489036 GGAGTATGG----------------ATTTTAAGGAGCGAAAACACAGGTCTAAAGCAGTA-CTTTAGGAACATTTTCAGGAAAATAGTATATGGCATAAA--GAAGGATATGATAAATTAGGAGGCTACTGTAAATATTTCAGAAGG--AAAGTCCTGAACAAAGCTGGTGACAAATACAAAAACATAGAGAATACC s canFam1.chr9 46548997 196 - 53642819 AGAATATGGATTTAAAACTACCAAAATTTTTAACAGAGAAAGAACAGGTCTAAAGCAGTATTTTTAAGACTATGTTTAGGTAAATAGTATGTGGCACAGAATGAAGGGAAAGATAAATTAGAAGACCATCTAAAATAGTTCAGGAGGGAAAAGATCTGAACAAAGCTGGTGACAAATACAAAAA-ATAGGGAACATC a score=918.0 s hg17.chr17_random 1260864 8 + 2618010 -AAAAAAGG s panTro1.chr19 15742778 8 - 82489036 -AAAAAAGG s mm5.chr11 106667264 8 + 121648857 -AAGCATGG s canFam1.chr9 46549193 8 - 53642819 CAAAGAAG- a score=991.0 s hg17.chr17_random 1260872 5 + 2618010 CAGAA s panTro1.chr19 15742786 5 - 82489036 CAGAA s mm5.chr11 106667272 5 + 121648857 CATAA a score=58415.0 s hg17.chr17_random 1260877 631 + 2618010 ATAAACCAAAAACGGGAAgggcctggtggctcacgcttgtaatcccagcacttctggagaccaaggcaggcatatcacgaggtcatgagttcaagactagcctggccaacatggtgaaaccccgcctctactaaaaatacaaaaacaggccgggcagtggctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacatgttgaaacaccgtctctactaaaaatacaaaaaattagccagacagggtgcgggcgcctgtagtcccagctacttaggaggctgaggcaggagaatggcgtgaacccgggagatggagcttgcagtgagcggagatcgcaccactgcacgctagcctgggcgacagagcaaaactctgtctcaaagaaacaaaaacaaaaaaatacaaaaactagccaagcgtggtgatgcgcacccataatcccagctactcaggaggctgtggcaggagaattgcttgaacccatgaggcagaggttgcagtgagctgattgtgctgctgcactccagcctgagcaacagagcaagactccatctcgggggaaaaaaaaaaaaaagaagaaataaa s panTro1.chr19 15742791 628 - 82489036 ATAAACCAAAAACGGGAAgggcctggtggctcacgcttgtaatcccagcacttttggaggccaaggcaggcatatcacgaggtcatgagttcaagactagcctggccaacatggtgaaaccccgcctctactaaaaatacaaaaacaggccgggcagtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacatgttgaaacaccgtctctactaaaaatacaaaaaattagccggacagggtgcgggcgcctgtagtcccagctacttaggaggctgaggcaggagaatggcgtgaacccgggagatggagcttgcagtgagcggagatcgcaccactgcacgctagcctgggcgacagagcaaaactctgtctcaaagaaacaaaaacaaaaaaatacaaaaactagccaagcgtggtgatgcgcacccataatcccagctactcaggaggctgtggcaggagaattgcttgaacccatgaggcagaggttgcagtgagccgattgtgctgctgcactccagcctgagcaacagagcaagac--catctcggggggaaaaaaaaaaaa-gaagaaataaa a score=4086.0 s hg17.chr17_random 1261508 29 + 2618010 CCAGAAACTGGCTGGCTCTGGACACACTG---------------------- s panTro1.chr19 15743419 29 - 82489036 CCAGAAACTGGCTGGCTCTGGACACACTG---------------------- s canFam1.chr9 46549201 51 - 53642819 CCAGAAAGTGACTAGTTCTAGACACACGAACTTTCTGTTAACACAGGAATG a score=780.0 s hg17.chr17_random 1261537 2 + 2618010 GT s panTro1.chr19 15743448 2 - 82489036 GT s rn3.chr10 96366021 2 + 110733352 GT s canFam1.chr9 46549252 2 - 53642819 GC a score=30595.0 s hg17.chr17_random 1261539 185 + 2618010 CAGGCCAAGGTACCCAGCTAGTAGCTAGAAATGCAGGGAAGTCTGAAGGAAGGTCAGAGCTAAAGGAAGATCCTAAATCAGCTTCAGTGGATTACAGAAGGCAGGAAAGAAGAC----------AATTACTAATT----GCAAACAGAGAAAAAGATGTTCA---------CAGATAGTTAAAACCGTTAAGACTAGAAATG----TTAAGT s panTro1.chr19 15743450 184 - 82489036 CAGGCCAAGGTACCCAGCTAGTAGCTAGAAATGCAGGGAAGTCTGAAGGAAGGTCAGAGCTAAAGGAAGATCCTAAATCAGCTTCAGTGGATTATAGAAGGCAGGAAAGAAGAC----------AATTACTAATT----GCAAACAGAGAAAAAGATGTTCA---------CAGATAGTTAAAACCGT-AAGACTAGAAATG----TTAAGT s mm5.chr11 106667484 95 + 121648857 CATATCAAGGTACAAAACTAGTATCCAGAAGTGCA-AGAAGTTTGAAGGAAGGACAGA----------------AAACTA--TCCACTGGAGT-------GTGGGAAGGAAGA-------------------------------------------------------------------AAAAGCAT------------------------ s rn3.chr10 96366023 133 + 110733352 CATGTCAAGGAACTTAGCTATTATCCAGAAGTGCAGGGATGTTTGAAGGAAGGGTAGAACTAAAAGA-------AAACTA--TCCACTGGAGT-------GTGGGAAGGAAAGT----------GTTTCT----------------------AAGACATTCATC-------CACATGGTCTAGATTGA------------------------ s canFam1.chr9 46549254 210 - 53642819 -CAGTCAAGGTCCTGAACTGGTGGCTAGAAATGCAGGGAAATCTGAAGGGAGTTCAGAGCTAAAGGAGACTTCAGAATCTGTTTCAGTACATTACGGAGACCAGGAAAGAAGACAACCCAACAGAATTACTGACTGGGAGAAAAAAAAAAAAAAAAAGATCATTAACAGAGTTGACAATTAAAACCAT-TAGGCTAGGAACATTATTTAAGT a score=5715.0 s hg17.chr17_random 1261724 29 + 2618010 TTACTTGAATTTCTAAGAAAAGT-CCCTAC s panTro1.chr19 15743634 29 - 82489036 TTACTTGAATTTCTAAGAAAAGT-CCCTAC s mm5.chr11 106667579 17 + 121648857 ------------TTAAGAGACAT-TCATCC s canFam1.chr9 46549609 30 - 53642819 TTGCTTAAATTTCTAAGAAAAGCACCATAT a score=-4357.0 s hg17.chr17_random 1261753 44 + 2618010 TGATTTTCTGGATTTCACGTAACTCATAAACTAAAATACATTTT--- s panTro1.chr19 15743663 44 - 82489036 TGATTTTCTGGATTTCACGTAACTCATAAACTAAAATACATTTT--- s mm5.chr11 106667596 33 + 121648857 ATATTTTCTAGG------GTAA--CATGAACTCAAAGGTA---G--- s rn3.chr10 96366156 17 + 110733352 -----------------CATGA-------ACGCAACTGTG---T--- s canFam1.chr9 46549639 43 - 53642819 TGATTTTGTGGGTTTGCCAGAATTCACAATCTAAAATATA-TAT--- s danRer1.chr3 20239566 44 - 31142523 TGAGTTTACTGATCTTGAGCAGCAAGTCGGCTGATCTGCA---TACC a score=231028.0 s hg17.chr17_random 1261797 186 + 2618010 TTACCTGGTTGTTGCGG---TTTTCCTGCAGCGGAGAAGTAGCATCATCAGGAAATGAGCTTACATTTCTCCTCTTCAGCATCTGGTCATCCTTCTTAGCTTTCCTCAGCTCCACATTGACCTCTATTCTGCGACGCCTCATTTCCTTGAGAAAAG--------------ATAACATGCCGTTTCACCTATCACACCAGTTTT s panTro1.chr19 15743707 186 - 82489036 TTACCTGGTTGTTGCGG---TTTTCCTGCAGCGGAGAAGTAGCATCATCAGGAAATGAGCTTACATTTCTCCTCTTCAGCATCTGGTCATCCTTCTTAGCTTTCCTCAGCTCCACATTGACCTCTATTCTGCGACGCCTCATTTCCTTGATAAAAG--------------ATAACATGCCGTTTCACCTATCATACCAGTTTT s mm5.chr11 106667629 184 + 121648857 TCACCTGGTTGTTCCGG---TTTTCCTGTAGCGGAGAAGTAGCATCATCAGGAAAGGAGCTGACGTTTCTTCTTTTCAGCATCTGCTCATCTTTTTTAGCTTTCCTGAGTTCCACATTAACTTCTATTCGGCGGCGACGCATTTCCTGAAGAAAAG--------------AGGACCT--TGTTTTATCTATCCCACAGGCTTT s rn3.chr10 96366173 184 + 110733352 TCACCTGGTTGTTTCGG---TTTTCCTGTAGTGGAGAAGTAGCGTCATCAGGGAATGAGCTGACATTCCTCCTTTTCAGCATCTGGTCATCTTTTTTAGCTTTCCTAAGTTCCACATTAACCTCTATTCGGCGGCGCCGCATTTCCTGAAGAAAAG--------------AACACCT--CGTTTTATCTACTCCATCAGCTTT s canFam1.chr9 46549682 183 - 53642819 TTACCTGGTTGTTGCGG---TTTTCCTGCAGTGGAGAGGTAGCGTCATCAGGAAATGAGCTTACATTTCTCCTTTTCAGCATCTGGTCATCCTTCTTCGCTTTCCTCAGCTCCACATTAACTTCTATTCGGCGCCGCCTCATTTCCTTGGAAGAAG--------------ATAAAC---CACTTCACCCACTATATCAATTTT s galGal2.chr18 6785694 175 + 8919268 TTACCTGATTGCTCCTA---TTTTCCTGAAGGGGAGAAGTGGCATCATCTGGAAAAGTGCTAACATTTCTTCTTTTAAGCATCTGGTCATCTTTTTTAGCTTTCCTCAACTCTACATTGACTTCAATACGCCGCCTTCTCATTTCCTGGAGAAAAC--------------A--------CATT---CATATCAAGTTCTTTAC s fr1.chrUn 120002099 187 + 349519338 TTACCTGCTGGTTTTGAGATCGTTCTTGAAGCGGAGAAGTCGCCTCTTCCGGAAACGCAGCCACGTTTCTCCTTTTGAACATTTGGTCATCTTTCTTGGCCTTGCGGAGCTCCACGTTGACCTCCACTCTCCGGCGGCGAAGCTCCTGCGACAACG--------------AGGAAATGTAAATCCAA--GCCACACTATTTCT s danRer1.chr3 20239610 191 - 31142523 -----TGACAGTTCTGGCTTTTCTCTTGGAGAGGAGAGGTGGCCTCATCCGGAAAACTGCTCACGTTTCTCCTCTTCAAAATCTGCTCGTCTTTCTTTGCTTTACGAAGCTCGACGTTGACTTCGATCCTTCGACGTCTCAGCTCCTAGATTACAGTATTTAACATTTATATGAAAGCTAATCTGAAATACGATAT------- a score=2833.0 s hg17.chr17_random 1261983 9 + 2618010 TGTTGCTAA- s panTro1.chr19 15743893 9 - 82489036 TGTTGCTAA- s mm5.chr11 106667813 9 + 121648857 TACTGCCAA- s rn3.chr10 96366357 9 + 110733352 CACTGCCAA- s canFam1.chr9 46549865 9 - 53642819 TGTGGCTAA- s galGal2.chr18 6785869 9 + 8919268 TTTTACAAA- s danRer1.chr3 20239801 9 - 31142523 -ATTTAAAAA a score=4092.0 s hg17.chr17_random 1261992 4 + 2618010 GTGA s panTro1.chr19 15743902 4 - 82489036 GTGA s mm5.chr11 106667822 4 + 121648857 GTCA s rn3.chr10 96366366 4 + 110733352 GTGA s canFam1.chr9 46549874 4 - 53642819 GTGA s danRer1.chr3 20239810 4 - 31142523 GTAA a score=-30.0 s hg17.chr17_random 1261992 11 + 2618010 GTGAGGGCATT s danRer1.chr3 20239810 11 - 31142523 GTAACAATAAC a score=100.0 s hg17.chr17_random 1261996 1 + 2618010 G s canFam1.chr9 46549878 1 - 53642819 G a score=100.0 s hg17.chr17_random 1261996 1 + 2618010 G s panTro1.chr19 15743906 1 - 82489036 G a score=-1159.0 s hg17.chr17_random 1261997 6 + 2618010 GGCATT-- s panTro1.chr19 15743907 6 - 82489036 GGCATT-- s mm5.chr11 106668003 6 + 121648857 GTGATT-- s canFam1.chr9 46549879 4 - 53642819 --AATA-- s danRer1.chr3 20239815 6 - 31142523 --AATAAC a score=-3908.0 s hg17.chr17_random 1262003 27 + 2618010 TTTTTTTT-AAATACCTCAGTTTTC--ACC s panTro1.chr19 15743913 28 - 82489036 TTTTTTTTTAAATCCCTCAGTTTTC--ACC s mm5.chr11 106668009 27 + 121648857 TTTTTTTT-AAATCCTTCAAAGACC--AAC s canFam1.chr9 46549883 30 - 53642819 TTTATTTCAAATTTCCTCAAAGTTCTGATC s galGal2.chr18 6785878 22 + 8919268 -TCTATTT-AAAGTATTGATAGCT------ s danRer1.chr3 20239821 19 - 31142523 ----ATTC-GACTCTCTTTATGCT------ a score=1742.0 s hg17.chr17_random 1262030 13 + 2618010 CCTTTCCAAATGT s panTro1.chr19 15743941 13 - 82489036 CCTTTCCAAATGT s canFam1.chr9 46549913 13 - 53642819 ACTTCCCAAATAT s galGal2.chr18 6785901 10 + 8919268 GCTAT---AATAT s danRer1.chr3 20239840 10 - 31142523 GTTTT---CATGC a score=6071.0 s hg17.chr17_random 1262043 13 + 2618010 CTTCCCATTTAAA- s panTro1.chr19 15743954 13 - 82489036 CTTCCCATTTAAA- s rn3.chr10 96366851 13 + 110733352 CTTTTCCTTTAAA- s canFam1.chr9 46549926 13 - 53642819 CTTTCCATTTAAA- s galGal2.chr18 6785913 13 + 8919268 ATTTACATTTGAA- s danRer1.chr3 20239850 13 - 31142523 -TATTCTGTTATAG a score=-1813.0 s hg17.chr17_random 1262056 6 + 2618010 TACCAC--- s panTro1.chr19 15743967 6 - 82489036 TACCAC--- s rn3.chr10 96366866 6 + 110733352 TATAAC--- s canFam1.chr9 46549939 6 - 53642819 AAATAG--- s danRer1.chr3 20239863 6 - 31142523 ---CATGTT a score=-599.0 s hg17.chr17_random 1262056 11 + 2618010 --TACCACCACAG s danRer1.chr3 20239863 11 - 31142523 CATGTTATCTA-- a score=-818.0 s hg17.chr17_random 1262062 2 + 2618010 CA- s panTro1.chr19 15743973 2 - 82489036 CA- s mm5.chr11 106668335 2 + 121648857 CG- s canFam1.chr9 46549945 2 - 53642819 CA- s danRer1.chr3 20239869 2 - 31142523 -AT a score=-547.0 s hg17.chr17_random 1262062 2 + 2618010 CA- s canFam1.chr9 46549945 2 - 53642819 CA- s danRer1.chr3 20239869 2 - 31142523 -AT a score=910.0 s hg17.chr17_random 1262064 3 + 2618010 -CAG s panTro1.chr19 15743975 3 - 82489036 -CAG s mm5.chr11 106668337 3 + 121648857 -CAG s rn3.chr10 96366872 3 + 110733352 -CAG s canFam1.chr9 46549947 3 - 53642819 -CAG s danRer1.chr3 20239871 3 - 31142523 CTA- a score=-861.0 s hg17.chr17_random 1262067 15 + 2618010 GAAAGCAACAGAAGG---- s fr1.chrUn 136436742 15 - 349519338 GGAAGCTCCGAAACG---- s danRer1.chr3 20239874 14 - 31142523 -----TAATGCAAAGTGGT a score=12449.0 s hg17.chr17_random 1262067 15 + 2618010 GAAAGCAACAGAAGG---- s panTro1.chr19 15743978 15 - 82489036 GAAAGCAACAGAAGG---- s mm5.chr11 106668340 15 + 121648857 GAAAGCAACAGAAGG---- s rn3.chr10 96366875 15 + 110733352 GAAAGCAACAGAAGG---- s canFam1.chr9 46549950 15 - 53642819 GAAAGCAACAGAAGA---- s fr1.chrUn 136436742 15 - 349519338 GGAAGCTCCGAAACG---- s danRer1.chr3 20239874 14 - 31142523 -----TAATGCAAAGTGGT a score=106989.0 s hg17.chr17_random 1262082 85 + 2618010 TACTCACTGTACTGTCTTTTCCCTTGTTCTTGAATCTGTGAAGACGGGCAGCTGGTGTATT---AGCATTCTCGTTGGTGGACA----------TGGT s panTro1.chr19 15743993 85 - 82489036 TACTCACTGTACTGTCTTTTCCCTTGTTCTTGAATCTGTGAAGACGGGCAGCTGGTGTATT---AGCATTCTCGTTGGTGGACA----------TGGT s mm5.chr11 106668355 85 + 121648857 TACTCACTGTGCTGTCCTTCCCCTTGTTCTTGAACCTGTTAAGTCGGGCAGCTGGTAAGTT---AGCATTCTCGTTCGTGGACA----------TGGC s rn3.chr10 96366890 85 + 110733352 TACTCACTGTACTGTCTTTCCCCTTGTTCTTGAATCTGTTAAGCCGGGCAGCTGTTGAGTT---AGCATTCTCATTGGTGGACA----------TGGT s canFam1.chr9 46549965 85 - 53642819 TACTCACCGTACTGTCTTTCCCCTTGTTCTTGAATCTGTTAAGGCGGGCAGCTGGTGAATT---AGCATTCTCGTTGGTGGACA----------TGGT s galGal2.chr18 6785926 92 + 8919268 TACTTACTGTAGTATCTTTTCCTTTGTTTTTGAATCTGTTCAAGCG---AGCTGCTGTATT---GGTATTCTCATTAGTAGACATCTTGCTTAGTGTT s fr1.chrUn 136436759 76 - 349519338 AACTTACTGCTGGGTCTTTGCCCTTGTTCTTGAATTTGGAGATGCG-----CTCGTCAGTG---ACGATT----TTTGTGGGCA----------TGGT s danRer1.chr3 20239888 88 - 31142523 CACTTACAGTGGCATCTTTTCCTTTGTTTTTGAACTGAGTGAGTCGAGCGGTGTTCTCATTTGCAGCAGACATTTTAATGGAGT----------TTGA a score=3759.0 s hg17.chr17_random 1262167 44 + 2618010 TATGAGACAAAGG-------GAGAAAGCTA------AAAGATGGGGG-------------------AAGAGAAAAA s panTro1.chr19 15744078 44 - 82489036 TATGAGACAAAGG-------GAGAAAGCTA------AAAGATGGGGG-------------------AAGAGAAAAA s mm5.chr11 106668440 50 + 121648857 TGCAGGAACAAGG-------AGGAAAGCTAGGAGCCAAGGGAGGGTG-------------------AGAAGAAAAA s rn3.chr10 96366978 72 + 110733352 TGCAGGAACAAGGAGG---AAGGAAAGCTAGTTGA-AAGGGAGGGTGAGAATAAGGAGAAAAAAAAAAAAGAAAAA s canFam1.chr9 46550050 44 - 53642819 TATGAGACAAAGG-------AAGAAAGCTG------TAAGATGGAGG-------------------AAGAGAAAGA s galGal2.chr18 6786018 51 + 8919268 CAGAAGACAAATGAGGAGAAAAAAAGCCTG------AAAACCAGAGT-------------------AAATGGTAAA s danRer1.chr3 20239976 34 - 31142523 ---TTGATCA----------CAGTGTGTCG------TAGCCTGG----------------------AAAATAAAA- a score=607.0 s hg17.chr17_random 1262211 2 + 2618010 TA s panTro1.chr19 15744122 2 - 82489036 TA s canFam1.chr9 46550094 2 - 53642819 AA s galGal2.chr18 6786069 2 + 8919268 CA s danRer1.chr3 20240010 2 - 31142523 TA a score=2228.0 s hg17.chr17_random 1262213 37 + 2618010 TTTCC--TTTATCATTTTCCTTTGTCAATAATAGTACCA s panTro1.chr19 15744124 37 - 82489036 TTTCC--TTCATCATTTTCCTTTGTCAATAATAGTACCA s rn3.chr10 96367052 18 + 110733352 ------------CATTT---------AATAACAATACAA s canFam1.chr9 46550096 39 - 53642819 TTTCCCATTTATCATTTTGCTTTGTCAATAAGAAGAGCA s danRer1.chr3 20240012 26 - 31142523 ---------TATCCGTGACATATAA-AACAACAATA--- a score=18238.0 s hg17.chr17_random 1262250 129 + 2618010 AATAAGAACTGAATTATCAAGCATCTACTGAATCCACACCTGTATACTAGAGGGGGGATCATCATGTTTTCGGCACTATGAAATA---GCTTTACCCAAAGGGGAAGTGTCCCCCTTCCCTCTAAAGGGCTG s panTro1.chr19 15744161 129 - 82489036 AATAAGAACTGAATTATCAAGCATCTACTGAATCCACACCTGTATACTAGAGGGGGGATCATCATGTTTTCGGCACTATGAAATA---GCTTTACCCAAAGGGGAAGTGTCCCCCTTCCCTCTAAAGGGCTG s canFam1.chr9 46550137 122 - 53642819 ------AATAGAATTACCAAGCATATACTGGACCCACACTTGTATAGTAGAGGACTAAC--TTCCTTTTTCAGCACTATGAAATACTGAACTGGCCCAACAGT--ATTAGTCCCCTCCTCTCCGAAAGGCTG s danRer1.chr3 20240038 107 - 31142523 -----CATCACAATCAATTCACATTTCATAAATACATCTTTATATAAT---GGTATTAACATACTATTT-----------AAATA------CGAGCAAAAGTAGGAACTCACCACTTTCAACCAAAGGACTG a score=10345.0 s hg17.chr17_random 1262379 48 + 2618010 AGACTTCCTGGAG-agggctctccatcagaaatagaatgcaagctatat s panTro1.chr19 15744290 48 - 82489036 AGACTTCCTGGAG-agggctctccatcagaaatagaatgcaagctatat s canFam1.chr9 46550259 49 - 53642819 AGACTTCCTGGAAcagtgctgtccatcagaaagagaaagcaagctgcat a score=11254.0 s hg17.chr17_random 1262427 37 + 2618010 aaattgaaacttcctagtagccatatttttaaaaagg-- s panTro1.chr19 15744338 37 - 82489036 aaattgaaacttcctagtagccatatttttaaaaagg-- s rn3.chr10 96367603 37 + 110733352 TAATTTAAAATTTCCACTAACCACATTTTTATAAGGG-- s canFam1.chr9 46550308 39 - 53642819 aaattgaaaattcctggtaactacattttttcaaaaacg a score=62097.0 s hg17.chr17_random 1262464 263 + 2618010 agaaaagaaacaag---tgaaactaattttaataatgtattttacttaacccaacatatccaaa----tagta-tttcaacgtgttatcaatatataaaataactgacatcttctacattctttttccatactccatctttgaaatcttttgtgtactttaagcttacagcgtatttcaatttggactagccacatGT-------------ATCCACCGTTTCT-GACAGCCTAGT-------------TCGATACTCCAGAGTCCCTAATAGTTAATTCAAGACAAAGTAGGGGAAC s panTro1.chr19 15744375 263 - 82489036 agaaaagaaacaag---tgaaactaattttaataatgtattttacttaacccaaaatatccaaa----tagta-tttcaacgtgttatcaatatataaaataactgacatcttttacattctttttccatactccatctttgaaatcttttgtgtactttaagcttacagcgtatttcaatttggactagccacatGT-------------GTCCACCGTTTCT-GACAGCCTAGT-------------TCGATACTCCAGAGTCCCTAATAGTTAATTCAAGACAAAGTAGGGGAAC s mm5.chr11 106669382 275 + 121648857 AGAAAGGAAGGAAGGAAGGAAATTAATTTTAAGACT---------TTTACCCAATATAGCTAAACTATTACCA-TTTGAGGATGTCATCAATACAGAAA--AATTGAGATGTCTTA----CTGTTTTTATA---CACCTTCAAAATCCAATGGGTAGTTTAAGCACACGGGGCATCTCAA--CAGATTAGCGGCTTTTCAAACACTCAATAGTCTTAAGCCTCTAGCCAGCACGGTATTAAGTCAAGGATCTAAATTCTAGGCTCCAT--TAGTTAATAGAACACCAAGTAGGAGAAC s rn3.chr10 96367640 276 + 110733352 TAAAAAGAAACGCA---TGAAATTAATTTTAAGACT---------TTTACCCAATATAGCTAAACTATTACCATTTTCAGGATGTCATCTATTCAAAAAA-AATTGAGATGTTGTA----CTTCTTTCGCA---CACTTCCAAAACCCTATGTGTAGTTTAAGCACACAGGGCATCTCAACTCAGATTAGCGGCTTTTCAAACACTCAATGGCCTTAAGCCTCTGGCCAGCACGGTATTAAGTCAGGGATCTACATTCTAGACTCCAT--TAGTTAATAGAACACCAAGTGGGAGAAC s canFam1.chr9 46550347 248 - 53642819 caaaaagaaacggg---agaaatgaatttcaaatct--attccctccggcccaacacgtccgctatactctcc-tttccacatgttctcc-tatttcga--gctagatagatttta----cacttttcatactaatactcggagatcatgtgcgtacttggggcttacagcacagctcaatccgggctagccacatcg-------------gtttgaggactca-CACACCACACT-----------GGACGGTGCAGCTGGGACC---------AACTGAACACAGAGTGGGGC--- a score=2788.0 s hg17.chr17_random 1262727 30 + 2618010 CAAGTCAACTTACAGCTAAA---AATTATGTGC s panTro1.chr19 15744638 30 - 82489036 CAAGTCAACTTACAGCTAAA---AATTATGTGC s rn3.chr10 96367917 33 + 110733352 CTGGCTGCTATATATATATAGTTAGTTATCTAC s canFam1.chr9 46550595 30 - 53642819 AAACTGAGCTCACAGTTAAA---ACCGACGTCC a score=153436.0 s hg17.chr17_random 1262757 745 + 2618010 --CAGGGCAATAAATTCAGATCCTCAGGAGGCTCTCCCTATTTTACTGTCTTTACTTGGCCAAAATAGGTGCAGA-----------CTCGAAAATTAAATAAAAATTTGCTTCAT-----------------CATTA-CATTAT---------------------GGTCAACATTAAAAATGCAGTGCCGCATCTCGCATATTTG-------------ATTTGCATTTCCAGAGACTAGGAGTGAATGCGCTTAATTAGGATGACATCAGCTGTGC--------------------------------------------------GTCATTCAGA---------------------------AGATGACAAAAGTCAAAGCCCTCCTTACAATTTGCTATCTTTGCTTTCATTACGCTCGCCTACGACTTGGTGGCAGAGCCACCCCCGGGGCCTAGGTGTC-AGAGACGGTGCTCCCAACTGCCACC----------------------CCCAGCCCCTGCCC------------CCACGCCGGGGAAGATGCAACGAGAAA--GGAGGAGGCGAAACCAGGGCCGCCACAAGTCCTCCCGG-GACATTCGCCCTCAAGCCTGGCTCGCTCCGATTCT---------------CCCGGCCGCGACGCGTTAAGGCCTCCGCTGCCGTTTGCAGAGCGTCGGCGCCCTAAACCCGCAGACCCC------------GCGAAACTCAGCCGCCTGGTCAATGAACGTCGCCCCCGAGGCCTAGTCAACGCGGGAGG-CAGAGCCAGGCTCGGCGTGGACCCGG----GGC---CTCCCTCCCCCAACCCAAAAGGCGAACGCCGCCCACGGGCAAGCCGTTAGCGCTCGGGCCGGGCCGCCGCCTGAGTCTGTACCTGCGAAGCGGGCCTGGGCTTCCACGGGAGGCGATGCGGGGGGAAT s panTro1.chr19 15744668 744 - 82489036 --CAGGGCAATAAATTCAGATCCTCAGGAGGCTCTCCCTATTTTACTGTCTTTACTTGACCAAAATAGGTGCAGA-----------CTCGAAAATTAAATAAAAATTTGCTTCAT-----------------CATTA-CATTAT---------------------GATCAACATTAAAAATGCAGTGCCGCATCTCGCATATTTG-------------ATTTGCATTTCCAGAGACTAGAAGTGAATGCGCTTAATTAGGATGACATCAGCTGTGC--------------------------------------------------GTCATTCAGA---------------------------AGATGACAAAAGTCAAAGCCCTCCTTACAATTTGCTATCTTTGCTTTCATTACGCTCGCCTACGACTTGGTGGCAGAGCCACCCC-GGGGCCTAGGTGTC-AGAGACGGTGCTCCCAACTGCCACC----------------------CCCAGCCCCTGCCC------------CCAGGCCGGGGAAGATGCAACGAGAAA--GGAGGAGGCGAGGCCAGGGCCGCCACAAGTCCTCCCGG-GACATTCGCCCTCAAGCCTGGCTCGCTCCGATTCT---------------CCCGGCCGCGACGCGTTAAGGCCTCCGCTGCCGTTTGCAGAGCGTCGGCGCCCTAAACCCGCAGACCCC------------GCGAAACTCAGCCGCCTGGTCAATGAACGTCGCCCCCGAGGCCTAGTCAACGCGGGAGG-CAGAGCCAGGCTCGGCGTGGACCCGG----GGC---CTCCCTCCCCCAACCCAAAAGGCGAACGCCGCCCACGGGCAAGCCGTTAGCGCTCGGGCCGGGCCGCCGCCTGAGTCTGTACCTGCGAAGCGGGCCTGGGCTTCCACGGGAGGCGATGCGGGGGGAAT s mm5.chr11 106669806 722 + 121648857 --TAAGGCAATAAACGCAG----------------CTCTCGTTTTCTGTTGATCGATGGCCAAAACGGATCCATACT-AGTACCCTCTTGCAAGTTACATAAAGAATCGGTTCGTTCCATTATAGGGCCTTCCATCA-CATCATCGC------------------TGTCAGCAATGGCATT--AACGCCGCATCTTGCACA----------------------CACTTCCAGA----------GAATGCATTCAGCCGGGATGACATCAGCTGTGATCAGTGGGGCTCGATAGAACCCA---------------------GGTGTGGTCGTCGCGA---------------------------AGG-GACAGGAACCCAAAGTACCCTGGTAAGCTAGTAGGTTTAACTGCTTTATGTCCGTCCTCGACCC--TGACCCAGGTGATCC--GGGTCAAGGGCTT-AACTGGGGTG-TCTTAACTGCCACC----------------------TTCATCCCCTGCCCAAAGCTGCGTCTCCTCCCCGGGGCAGAAGCATC-AGGAA--AGCGGCGGCACAGCCAGG-------TAGGTCCGCTCGACTGCGGCTGCCCTCCGG------TCCCTCCA---CG---------------CCGACCCGAGCCGCTCCCAGGCCTTCGCTGCCCTCCGCAGCGC-CCGGCGTTGCCAACCCT--GACCCCG------GCGTGGCGAAACCAACCCG-------------------CCCCGAGGCCTGGTCGGAGCAGGG----------AGGCTCAGCTCCGGCCCGGGCGCGGCCTGCTCCCGCCCTCCGCCC----------CGCAGCCTTCCGTCCGGCCGTTACTGCTCAGGACCGGCTTCC------GTTCCTACCTGTACAGCCGGCTCAGATTTCCACGAAAGGTGGTGC-AGGACACT s rn3.chr10 96367955 733 + 110733352 --TAAGGCAGTAAATGCAG------------CCTTTTCTGCATCATTTTCTGTTGATGGCCAAAACGGATCCATACT-AGTATCT-CTATCAAGTTACATAAAGAATCGGTTCGT----------TACCTTCCATAACCATCGC---------------------TGTCAGCAGT--------GATGCCGCATTTTGCACA----------------------CACTTCCAGC----------GAATGCATTCAACCAGGATGATATCAGCTATGT-----------GGTCAGTCACCGTAGCTCAATATATCTAACACAGGTGTGATC-CTCACA---------------------------ATGTGACAAGAATCTAAAGTCCCCTGACAATCTGTTAGCTCTACCTGCTTTATGTCCGTCCTCGACCC--TGACACAGGTGACTC--GGTTCAAGAGCTT-AACTG-GATG-TCTTAACTGCCACC----------------------TTCGCCTCCGGCCCAAAGCTGCGTCTCCTCCCC-AGGAAGAAGCATC-AGGAA--AGCGGCTGCATG------------CCAGGTCCTCTCGACTGCGGCCGCCCTCCGG--TCCCCCACGCCGACCCTCGGGGCCGCACCGAACCGAGCCGCACCGCACCCAGGCCTTCGCTCCCCTCCGCAGCGC-CCGGCGCTGCCAGCCCTTAAGCCCA-------GCATGGCGAAACCAACCAG-------------------CCCCGAGGCCTGGTCTGAGCGGGG----AGGCTCAGCTCCCGCCCGGGCGC------GGCCTGCTCCCGCCCTCCGCCG----------CACAGCCCTCTGTCCGGTCGTTACAGCTCAGGACCGGCCTAC------GCTCCTACCTGCACAGCCGGTTCAGACTTCCACGAAAGTCGGTGC-AGGGCTCT s canFam1.chr9 46550625 789 - 53642819 TAACGGGCCACAAATCCAT--ATTCCGGAGGCTCTCCC----------------AATGGCCCAAACAGGTCCATTCTCCACA----CTTGAAAGTTAAAGGAGTATGTGGCACAT-----------------CATCG-CGTTACGGAGGCTTCCATAACCCTGCGTGTCAACACCGAGACCTCGAGACCCAATTCTGCATCCTCAGCACCCGGCAAACATTTTCATTCCCAAG----------AAACGCTCTCAGTTAGGCGGCTACTAACCCCGC--------------------------------------------------TTCCTTCAAACAGAGCTCTTTCAGAGCGATCGCCAAGGGAGGACAAAAGTACAAGTCCTCCTGGCAATGTGCGGTCTTCCATTCCGTGATGTTCCCTGCCGACGCTGTGTCACAGCCGGGCC-TGGGCCTACGTGTTAAGAGACGGTTCTTCCAACTGCCACCGCCCCCCCGCCCCGTCTCCAAGCCCTTCCCCTGCCC------------CCCACCC-GGGAAGATGCAGCGGGGAACGGGCGGAGGCGGGGCCAGAG-----------------GG-GACAGCGCCGCCCGGG------CCTCGGCGATCTT---------------CTGGGCCGCGACGCGCCGCAGCTCCCGCCGCGGTCCGCAGAGCCTCAGCG------GCCCCCAAACCCAAGCAATCGCACCGCGACAC--GGCCGCCTCCTCAACGAACGACG-CCCCCAGGCCTCGTCAACGACGGAGGCCACAGCCAGGTCGGGCGTGGAATCCG----GGC---CTCCCCTCCCGCCACCACAAGCGGGGCGCGGCCTGCCAGCCTGCCGCTGCCGCTCGGGCCGGGCCCTGGCCTCAGT-CGTACCTCCACGGCCGGCTCAGGCTTCCACGGGAGGCGGTGC-GGGGCGCG a score=44667.0 s hg17.chr17_random 1263502 85 + 2618010 CAGCGGCTGTAGGGCGACTGCGTTCAAAGGGTCCACCT--CGACTCAGCTCAAAGACCGTGTGGCTCGTGCAGCCGG------CCGGCGCGAT s panTro1.chr19 15745412 85 - 82489036 CAGCGGCTGTGGGGCGACTGCGTTCGAAGCGTCCACCT--CGACTCAGCTCAAAGACCGTGTGGCTCGTGCAGCCGG------CCGGCGCGAT s mm5.chr11 106670528 83 + 121648857 CA--AGCTGCGGGTCGGCGGCTGTGGAAACGTCTGCTA--CCCTTCAGCCCTCAGATTTTGTGCCTCGTGCTGCCGG------CCGGCGCGAT s rn3.chr10 96368688 83 + 110733352 CA--AGCTGCGGGTCGGCGGCTGTCGAAACGTCCACTA--GCCCTCAGCCCTCAGACTTTGTGCCTCGTGCTGCCGG------CCGGCGCGAT s canFam1.chr9 46551414 83 - 53642819 CA--GGCCGCGGGTCAGCTGCCCTCAAAACGTCCACCG--CGGATCAGCCCAGAGACGGTGTGGCTCGTGCTGCCGG------CCGGCGCGAT s galGal2.chr18 6786764 90 + 8919268 CAGCCGCTGCAGATTG--CACAAACAAGCCGCCCTCCTGCCTCCCCAGC-CAAGGACCACGCTGCCACTAACCTCGGCGGCTCCAGGCGGGAT a score=82595.0 s hg17.chr17_random 1263587 79 + 2618010 TTAAATTTCCCGGTGACTCCGCATTCCGATTGGCTGGTTCGAGCCTAAGCTGTGTGCCCATTGGTGGATTTGAAAAACA--- s panTro1.chr19 15745497 79 - 82489036 TTAAATTTCCCGGTGACTCCGCATTCCGATTGGCTGGTTCAAGCCTAAGCTGTGTGCCCATTGGTGGATTTGAAAAACA--- s mm5.chr11 106670611 79 + 121648857 TTAAATTTCCCGGTGACGCCGCGTTCCGATTGGCTGATTTGAGCCTAAGCTGCGCGTTCATTGGTAGGTTTGAAAAACA--- s rn3.chr10 96368771 79 + 110733352 TTAAATTTCCCGGTGACGCCGCGTTCCGATTGGCTGGTTTGAGCCTAAGCTGTGCGTTCATTGGTAGGTTTGAAAAACA--- s canFam1.chr9 46551497 79 - 53642819 TTAAATTTCCCGGTGTCCCCGCATTCCGATTGGCTGGTTCGAGCCTACGCTGCGCTCCCATTGGCGGATTTGAAAAACA--- s galGal2.chr18 6786854 78 + 8919268 TTAAATTTCCCGCTCCCTCCCTCTGCC-ATTGGCCAGTTCGAGCCATAGCAACATTCTGATTGGCCGGTTTGAAATGCA--- s danRer1.chr3 20240170 80 - 31142523 TTTAAACTCGCGGT--TTGAACAATCTGATTGGCCTGTTCGAGCAAAAGCATCTTCCTATTGGGCCGTTTTGAAAAATCACA a score=2501.0 s hg17.chr17_random 1263666 23 + 2618010 -CGTTGG-GAGGGGAGG-GAGT-----------CACA s panTro1.chr19 15745576 23 - 82489036 -CGTTGG-GAGGGGAGG-GAGT-----------CGTA s mm5.chr11 106670690 21 + 121648857 -CGTTAG-GCGGGGGTG-GGG-------------GTG s rn3.chr10 96368850 34 + 110733352 -CGTTAG-GCGGGGGTG-GGGGTGGGACGCAGACACA s canFam1.chr9 46551576 21 - 53642819 -CGTTGA-TTTGGG--G-GGGT-----------CATG s danRer1.chr3 20240250 26 - 31142523 CCGCTGGCGTGAAGACGTGGGT-----------CACA a score=48482.0 s hg17.chr17_random 1263689 262 + 2618010 GGGCTTGGG--GGCGAGTGGGAGGGGGGAAAG-AAAAAAAAAAAAAAGAGGATGGCATCGCGAGATGAGGGAGCGGCCGGGCGGTGAGGGAGCGGCCGGGCGGTCCCTGAGCGCCTGGCGGGGCGGAGCGGGAGGACTCCAGATCCCGTCAAGCAGCGCGAAGGGGCGGTTCCCTGGG--CCGTTCGTGTTTCCATAGG--GTTGAAGCGTGCA------------TGGTCCTTGGGCGTTTTCCTGGGCGACAGCCTTAA-ACAAATACCACAAAATGATT s panTro1.chr19 15745599 263 - 82489036 TGGCTTGGG--GGCGAGTGGGAGGGGGGAAAGAAAAAAAAAAAAAAAGAGGATGGCATCGCGAGATGAGGGAGCGGCCGGGCGGTGAGGGAGCGGCCGGGCGGTCCCTGAGCGCCTGGCGGGGCGGAGCGGGAGGACTCCAGATCCCGTCAAGCAGCGCGAAGGGGCGGTTCCCTGGG--CCGTTCGTGTTTCCATAGG--GTTGAAGCGTGCA------------TGGTCCTTGGGCGTTTTCCTGGGCGACAGCCTTAA-ACAAATACCACAAAATGATT s mm5.chr11 106670711 239 + 121648857 GGACGCAGA--CGCAGGTCGTAGGGGAAAA---AAAAAAAAAAAGGTGGGGGTGGGGCGGTAAGC--AGGGAAGCGTCGCGAGATGAGGGAGCGGCCGGGCAATCCCAGGGTGCCTTGC-------AGAAGGGTGACTCCAGATCTCAGCACACAGCATGGAGA--------CCTGCGTTTCGTCTATGCTTAGATGGA-CACTGGGCCGTA------------------CCCTGTTTGCTTTCCCTGGGCTTGTCCTTAA-ACAAACA-CACGAAATTATT s rn3.chr10 96368884 217 + 110733352 GGACATAGGAAAGAAGGTGGGGGTGGGGCGGT-AAGAA-----------GGGAGGCATCGCGAGA-------------------TGAGGGAGCGGCCCGGCAATCCCAGAGTGCCTTGC------ACAAGGGGCGACTCCTGCTCTGCGCACATAGCACCTAGT--------CCTGTTTTTTGTCCCTACTTAGCTAGAACACTGGGCAGTT------------------CCCTGTTTGCTTTCTCTGGGCATGATCTTAA-GCAAACA-CACAGGATTATT s canFam1.chr9 46551597 225 - 53642819 GGGCTAAGA------------------------AGGAG--------AGAAGAGAGCATCGCGAGA-------------------TATGGGAGAGGCCAGGCAATCCCAGAGCGCTTTGCAGGTGGATGAAGAAAGACTCCAGATCCCGGCGTGCAGC-----GGGCCAGTGCGCTGGACTTTGGCCTCAATCTAGGGGCTCTGCGGGGGGTTCATGCTAGTGAGGTTGCTCCCAGGTCGTTTGCCTGGGCAGCTGCTTTAACCCAAACACCAC-AACTGATT a score=1955.0 s hg17.chr17_random 1263951 22 + 2618010 CTCTAAGTCATTAT-TTTAAAAA s panTro1.chr19 15745862 23 - 82489036 CTCAAAGTCATTATGTTAAAAAA s rn3.chr10 96369101 22 + 110733352 ATTACACTTGTTAT-CAAAAAAA s canFam1.chr9 46551822 22 - 53642819 TCCAAAATAATGCT-CTTTAAAA a score=0.0 s hg17.chr17_random 1263973 14 + 2618010 CTTTGTTGTTGATC a score=1319.0 s hg17.chr17_random 1263973 14 + 2618010 CTTTGTTGTTGATC s panTro1.chr19 15745885 14 - 82489036 CTTTGTTGTTGATC a score=1264.0 s hg17.chr17_random 1263987 6 + 2618010 TTCATG s panTro1.chr19 15745899 6 - 82489036 TTCATG s canFam1.chr9 46551844 6 - 53642819 TTCTTG a score=11024.0 s hg17.chr17_random 1263993 73 + 2618010 AAAATAAAAAAATTCTAATTAGTAAAT-AAGTAATCTTTATAGAAAAACATATTGCTTTGCATTTTTTTCCTAT s panTro1.chr19 15745905 73 - 82489036 AAAATAAAAAAATTCCAATTAGTAAAT-AAGTAATCTTTATAGAAAAACATATTGCTTTGCATTTTTTTCCTAT s rn3.chr10 96369454 69 + 110733352 AAAATAAATAAATG--AATAAATAA---AAATAAATACAATAATAAAAGAGCTTACCATAAATATATTAACTAT s canFam1.chr9 46551850 72 - 53642819 AAAGAGAGGAGGTG--GGTAAAAAAAGAAAAAAAATTTGATATAGAAACATATTGCTATGAGGTTTTTCCTTGA a score=8985.0 s hg17.chr17_random 1264066 53 + 2618010 TATGACACCCAAAGTACTCGGCGGGGGTTTCTGGCTACTATGGGAGGGAAGAT---------- s panTro1.chr19 15745978 53 - 82489036 TATGACACCCAAAGTACTCGGCGGGGGTTTCTGGCTACTACGGGAGGGAAGAT---------- s canFam1.chr9 46551922 63 - 53642819 TGGGACACAGTAGGAACTTGGCAGGGGTTTCTGGCCACTATGGAAGGAAAGGATAAGGCAGGT a score=5251.0 s hg17.chr17_random 1264119 43 + 2618010 TTGTGTTATATTTTTTAGTTTAG-TTTTTTTTTAATTGCATCAT s panTro1.chr19 15746031 44 - 82489036 TTGTGTTATATTTTTTAGTTTAGTTTTTTTTTTAATTGCGTCAT s rn3.chr10 96369702 31 + 110733352 GTGTGTTAAATT------TTTAG-------ATTACTTGGAAGAT s canFam1.chr9 46551985 43 - 53642819 TTGGGCTGCATTTTTTAGTTTTT-ATTTTTTTAACGTGAGTTAG a score=17737.0 s hg17.chr17_random 1264162 39 + 2618010 AAAAGACTGTATAGAAGCCGCAAATATGGAAACAAAAGG s panTro1.chr19 15746075 39 - 82489036 AAAAGACTGTATAGAAGCCGTAAATATGGTAACAAAAGG s mm5.chr11 106671613 37 + 121648857 AAAGGAC--AATGGAAGCAGCAAATATGGTAACAATAAT s rn3.chr10 96369733 34 + 110733352 AAGAGAC--AATGGAAACAGCAAAT---GTAACAAATGA s canFam1.chr9 46552028 39 - 53642819 AAAAGACTGCATAGAAGCCACAAACATGGAAACAGAAGG a score=6647.0 s hg17.chr17_random 1264201 30 + 2618010 TTTCTTATGCCTGTTTCTCCAAAAAC--TCAA s panTro1.chr19 15746114 30 - 82489036 TTTCTTATGCCTGTTTCTCCAAAAAC--TGAA s mm5.chr11 106671827 32 + 121648857 TTATTAATACCTATTTTCTCCAAACCTTTAAA s rn3.chr10 96369768 31 + 110733352 TTACTAATGTCTATTTTCTCCAAACCCTTTA- s canFam1.chr9 46552067 21 - 53642819 TTTCTTAAGCCTATTTCTCCA----------- a score=4935.0 s hg17.chr17_random 1264231 11 + 2618010 GTtttttattt s panTro1.chr19 15746144 11 - 82489036 GTtttttattt s mm5.chr11 106671859 11 + 121648857 ATTTTTTATTT s canFam1.chr9 46552088 11 - 53642819 GTCttttactt a score=365.0 s hg17.chr17_random 1264242 19 + 2618010 ttaaataatttcaaatgca----------------------------------------------------------- s panTro1.chr19 15746155 19 - 82489036 ttaaataatttcaaatgca----------------------------------------------------------- s mm5.chr11 106672021 19 + 121648857 TCAAATACTTTAAAACTTG----------------------------------------------------------- s canFam1.chr9 46552099 78 - 53642819 ttaaataatttcaaatacaataaataaataaataaataaataaataaataaataaataaataaataaattcaaataca a score=40120.0 s hg17.chr17_random 1264261 102 + 2618010 gcagaattgcaaatctttatccagatttgccaaatcttaacattttgccacatttgctattgctttctctatacatatatat-gtatacatatgcacgcgtgt s panTro1.chr19 15746174 102 - 82489036 gcagaattgcaaatccttatccagatttgccaaatcttaacattttgccacatttgctattgctttctctatacatatatat-gtatacatatgcacgcgtgt s mm5.chr11 106672053 97 + 121648857 ACAGAATCACAAACCTTTGCCTAGACTTGCCAAATGTTAACATTTCGGCACATTTTAAAATATGT------AACATGTATATAGTGTACACACACACACATAT s rn3.chr10 96370111 86 + 110733352 ACAGAATCACAAATCTTTGTCTAGACTTGCCAATTGTTAA-ATTTTGTCACATTTTTT-------------TATATGT-TAC-GTGTATATA-GCGTGCGTAC s canFam1.chr9 46552177 88 - 53642819 gaagaattgcaaatccattcccagattggccaaatattaacattttgccacatttgctatttctc--------------tat-gtacacatgcacacacacac a score=3121.0 s hg17.chr17_random 1264363 12 + 2618010 acatatgtgtga s panTro1.chr19 15746276 12 - 82489036 acatatgtgtga s rn3.chr10 96370197 12 + 110733352 CCGCATGTGCAA s canFam1.chr9 46552265 12 - 53642819 atatgtgagtaa a score=-643.0 s hg17.chr17_random 1264375 17 + 2618010 ttttaatatgttac-------------ttt s panTro1.chr19 15746288 28 - 82489036 ttttaatatgttac--tttttgaaacattt s canFam1.chr9 46552277 29 - 53642819 aagtaatatgtaaaagccacgtatacatt- a score=8859.0 s hg17.chr17_random 1264392 53 + 2618010 aagagaaag--tttcag-aatcatgtcctttttcct----ctgtttcacggtgtctctcc s panTro1.chr19 15747086 53 - 82489036 aagagtaag--tttcag-aatcatgtcctttttcct----ctgtttcacggtgtctctcc s rn3.chr10 96370408 55 + 110733352 TCTTGATAG--TTTCAG-AATTATCTCTTTAGCTCT--AAATATTCCATAGTATATCTGC s canFam1.chr9 46552314 60 - 53642819 aattgtaagcatttcagaaattatgtcccttaaccactaaatacttcattttgtatcttc a score=-826.0 s hg17.chr17_random 1264445 4 + 2618010 taag- s panTro1.chr19 15747139 4 - 82489036 taag- s mm5.chr11 106672708 4 + 121648857 GAAA- s rn3.chr10 96370463 4 + 110733352 TGAG- s canFam1.chr9 46552374 4 - 53642819 -tagt a score=25095.0 s hg17.chr17_random 1264449 46 + 2618010 aaaagacattctcttatataaccacactgc-agtcatcaaatt-caga s panTro1.chr19 15747143 46 - 82489036 aaaagacattctcttatataaccacactgc-aatcatcaaatt-caga s mm5.chr11 106672712 48 + 121648857 AAAAGACATTCTTTTATATAAGCACACTGCAAACCCCCAAATTAAAGA s rn3.chr10 96370689 48 + 110733352 AAAAGACACTCTCTTATGTAAGCACACTGCAAGCCCTCAAATTAAAGA s canFam1.chr9 46552378 42 - 53642819 ----aacattcttttatatgactacaccac-agttatcaaatt-cagg a score=204156.0 s hg17.chr17_random 1264495 655 + 2618010 aaaactgaaatttcatgctgttgtttagtatgtagtgtgtgttcaagttt---tttcaattgttatagtaacattctATGCT---CATTACACATTTCTGAAT------TTTGCATTTT-TTGCCATATGCTCAAACGAACAAACAAAACAAAGATGGTCAACAGAGCATCAGGATTCTGGGCCA--TTTTTG-----TTTCTGCAATTTTTTTGTGTTCTAAAAGATTACATTTTAGAAAAGTTTTCATGGTTTATTTCT-----TACTATAAATAAATTCAAACAGCA-AGTTTGTCCATTTTTGCAGGCATTAATGCCAGCCTCATTCATCGTAAAGC---CA-GAG-TTCATAAAGGGTTGGACCTACTC--------TTAATCAGCAtaatcccatccccctaaatgcaagaatgtggaaggaattcacccctaaaccaatcactgtgtggcattctctcagctactgagaatggttcaggggcaggcacatgacctaaattcatccagttggacagcctctgccttttgtttactggTTGGAGGTAGGAAAGCAGCCTCTGTTCTTCTGAACTAAGGGATGTGAGTCCTAGAAATCTGAATAAGAAAACTGTAGGG----------------AAACCTTGAGAGGTCTGA-------CCTGCTC-------------------TATCTCTGAAGG---------------TTTGCAGTTAGGAGATCCGATACACATTTCTTTT----G s panTro1.chr19 15747189 658 - 82489036 aaaactgaaatttcatgctgttgtttagtatgtagtgtgtgttcaagttt---tttcaattgttatagtaacattctATGCT---CATTACACATTTCTGAAT------TTTGCATTTT-TTGCCATATGCTCAAATGAACAAACAAAACAAAGATGGTCAACAGAGCATCAGGATTCTGGGCCA--TTTTTG-----TTTCTGCAATTTTTTTGTGTTCTAAAAGACTACATTTTAGAAAAGTTTTCATGGTTTATTTCT-----TATTGTAAATAAATTCAAACAGCA-ACTTTGTCCATTCTTGCAGGCATTAATGCCAGCCTCATTCATCGTATAGCAGCCA-GAG-TTCATAAAGGGTTGGACCTACTC--------TTAATCAGCATAATCCCATCCCGCTAAATGCAAGAATGTGGAAGGAATTCACCCCTAAACCAATCACTGTGGGAGattctctcagctactgagaatggttcaggggcaggcacatgacctaaattcatccagttggacagcctctgccttttgtttactggTTGGAGGTAGGAAAGCAGCCTCTGTTCTTCTGAACTAAAGGATATGAGTCCTAGAAATCTGAATAAGAAAACTGTAGGG----------------AAACCTTGAGAGGTCTGA-------CCTGCTC-------------------TATCTCTGAAGG---------------TTTGCAGTTAGGAGATCCGATACACATTTCTTTT----G s mm5.chr11 106672760 586 + 121648857 ATAATTCAACTTCCATTTTATTAT--------CAGTGCATATTCATGTTTGTGGTCTAATTATTATTTTCAAA------------CATCAAACATGTGTATA---------------------------------------------------------------AGCATCAGGATCATGTGCCAATTTTTTGTGCTTTTTCTGCAATTTTTCTGGGTCCTTTACAGGAGTATTTTAGAAAAGTTGTAGTCGTTTATTTGTACAAAAAGAAAAAGAAAATACAAGCGGTATGCTTGGTCTGTTCTCACAGGCATTTGTGCCAAT----TCTCTGGTGTGGC--CCA-GAACTTCACAGGCAGTTGCTCCCAATC--------TGA----------------CCTGCTAAATGCAAGAATGTGGAAGAAATTTA-TTCTCAGCCAATCACTACCAGGCATTCCCTTGGCTACTGTGAATGGTTCAGGGGCAGGCACATGACCTAAATTCATCCACTTGGGAAGCCTATGTCCTTTGTTTA---GTCTGAGGTAGGAA--CAACTTCT-----------CAAAGGAGATTGAATCTTACAACTCTGAATATGGAACTTGTAGGAAAAAAAAAAAAAAAACAAACGTTGAGGGCTCTGA-------CCCATACCCTGCCAAATCTGCCAGTGTATCTCTGAA-G---------------TTTATGCTTAG-----------TGCATGTAAGCT----G s rn3.chr10 96370737 564 + 110733352 AAATTTCGACTTCCATTTTATTA---------------------------------------------------TCAGTGCA---TATT---CATGTCTGTGG------TCTAATTAT--------TATTTTCAAAC----------ACCAGAGATGTCTATA--AGCATCAGGATCGTGAGCCA-TTCTTTGTGCGTTTTCTGCAATTTTTCTGGGTCCTATGTAGGCATA---TAGGAAAGTTGTGGTCGTTTATTTTG--------TAGAAACAAATGCGAGCGTTATGCTTTGTCTGTTCTCACAGGCACTGGTGCCAAT----TCTCTTGTGTGGC--CGA-GAAGTTCACAGGCAGTTGCTCCCAATC--------TGA----------------TCTGCTAAATGCAAGAATGTGGAAGAAATCTA-TTCTCAACCAATCACTGCCAGGCATTCTCTTGGCTACTGTGAATGGTTCAGGGGCAGAAACATGACCTAAATTCATCCACTTGGGAAGCCTATGTCCTTTGTTCAGTAGTTTGAGGTAGGAA--CAACTTCT-----------GAAAGGAGACTGAATCTTACAACGCTGAATAAGGAACTTGGAGAA----------------GAACGTTGAGGGCTCTGA-------CCAAACC-----------CACCAATGTATCTCTGAA-G---------------TTTATGCTTAG-TGATCCGGCGTGTGTATTATTTAGCAG s canFam1.chr9 46552554 672 - 53642819 ACAACTGAATTTTGATGCTATCATGTATTATGTAGTG--TGTTCAAGTTC---TGACAATTGTTCCAAT-ATGTTCTATGCTGTATTTTACACTTCTCTGAATAAAATATTTGCATTTTCTTGC-----------------------ATCACAAATGGTTA-CAGAGCATCAGAATTAAAGACC---TTTTTG-----TTTGTGCAATTTTTCTGCATTCTAAAAAGGGCATTTTTAGAAATGTTGTATTGGCTTATTTAT---TTTACTATAAAGAAATTCAAACATTGAACTTTATCCATTCTTGCAGGCATTTTTGCCAGCCTCATTCATTGTGTAGCAGCCATGCGCTTCATTAGCAGTTGATTCTACGCCTCCCAATTCAATCAGTATGATCCCATCCCCCTAAGTGCAA-AATGTGGAAGGAATTCACCCCTAAACCAGTCACTGCAAGGGATTCTCTTGGCTACTGTGAATGGTTCAGACGCAGGCATATGACCTAAATTCATTCAGTCGGGAAGCCTATGCCTTTTGTTTAATGACTGGTGATAGGAAAGCAGGCTCTGTTCTTCTGAACTGGGGGATGTGAGTCCTAGAAATTTGAATAGGACAATTGTAGAG----------------AAACCATGAAAGCTCTGATCAACAGCTTGCCC-------------------TACCTCAGAAGGTTGCAATTACATAactttgcaattatgtcacctga--cacacttccttt----g a score=3395.0 s hg17.chr17_random 1265150 9 + 2618010 TATTGTCAA s panTro1.chr19 15747847 9 - 82489036 TATTGTCAA s mm5.chr11 106673346 9 + 121648857 CATTGGTAA s rn3.chr10 96371301 9 + 110733352 CATTGTTAA a score=2332.0 s hg17.chr17_random 1265159 10 + 2618010 GTTGAGTTTC s panTro1.chr19 15747856 10 - 82489036 GTTGAGTTTC s mm5.chr11 106673355 10 + 121648857 ATTGAGCTTC a score=29517.0 s hg17.chr17_random 1265169 315 + 2618010 TTCTCtttttttttttcttttttttcttttctttgagacagggtctagctctgtcgcccaggctggagtggagtggcacgatctcagctcactgtgacctctgcctcctgggctgaagccatcctcccacctcagcctcccaaatagctgggactataggtacacaccaccacgtccagctaatttttgcattttttgtaaagacagggtttcactattttgcccaagctggtctcgaagtcctgagctcaagcaatccacccacctcagcctcccaaagtgctggaattataggcctga-ccaccataccaagcc s panTro1.chr19 15747866 316 - 82489036 TTCTCtttttttttttcttttttttcttttctttgagacagggtctagctctgtcgcccaggctggagtggagtggcacgatctcagctcactgcgacctctgcctcctgggctgaagccatcctcccacctcagcctcccaaatagctgggactataggtacacaccaccacgtccagctaatttttgcattttttgtaaagacagggtttcactattttgcccaagctggtctcgaagtcctgagctcaagcaatccacccacctcagcctcccaaagtgctggaattataggcctgagccaccataccaagcc a score=1759.0 s hg17.chr17_random 1265484 8 + 2618010 AAGTTGAG s panTro1.chr19 15748182 8 - 82489036 AAGTTGAG s rn3.chr10 96371310 8 + 110733352 AAACTGAG a score=1272.0 s hg17.chr17_random 1265492 3 + 2618010 TTT s panTro1.chr19 15748190 3 - 82489036 TTT s rn3.chr10 96371318 3 + 110733352 CTT s canFam1.chr9 46553250 3 - 53642819 ttt a score=72494.0 s hg17.chr17_random 1265495 297 + 2618010 CTTTTGCTTGAAAATACTG-ACtactatgtg-cccagaagtgttctgagtgtttaccatatattaatacacttgatcttcacaactgtgag--gtagt---actgttatttgct---ctatttcacaaaagagagcactgaatcacaagtgtttatgtaacttgttccagggtcacacagccagtaaatggcaaagacaggattcagccataagcagtctggttccaggatctgtgttctgaaccactattctgtactTGCACCTAAAAACAACCTGAAACAGAAGTATAATGCCCAAAATTGCCTT s panTro1.chr19 15748193 297 - 82489036 CTTTTGCTTGAAAATACTG-ACtactatgtg-cccagaagtgttctgagtgtttaccatatattaatacacttgatcttcacaactgtgag--gtagt---actgttatttgct---ctatttcacaaaagagagcactgaatcacaagtgtttatgtaacttgtaccagggtcacacagccagtaaatggcaaagacaggattcagccataagcagtctggttccaggatctgtgttctgaaccactattctgtactTGCACCTAAAAACAACCTGAAACAGAAGTATAATGCCCAAAATTGCCTT s mm5.chr11 106673365 208 + 121648857 CTTCCCCTCGAAAACAGTA-AGTAGAGTGTT-CCCGCAAGTATTTTTGGTGATGTGCATGTGTTCAT-----------------------------------------------------TGTCAC---AGATAGGATAAAGTCATAAAGTCTTAAGTGATTTGTCCCAGGTATACAAAGACAACAAATGAC--AGATGGGAACCAAGCCCA---------------------------------------CTGTACTAACCCTTGAAAAGAAACTGAAACACAAGAATAATGTCAAAAGTTGCCTT s rn3.chr10 96371323 202 + 110733352 TTCCCCCTGGAGAACAGTGAAGCACTGTGTTCCCCACAAGTATT-TCGGCGCTAAGCGTCTACTAAT-----------------------------------------------------TGTCAC-------AGGATGAAGTCATAAAGTCCTAAGTGATTTGTCCCAGGTTTACAGAGACAACAAATGAC--AGATGGGAACCGA----------------------------------GCCCA-----CCGTACTAACCCTTGAAAGGAAACTGAAACACAAG---AATGTCACAAGTTGCCTT s canFam1.chr9 46553253 282 - 53642819 cttttgcttgaaaATATGG-AGtactatgtg-cccagaagtgttctaagtgttttacatatattaatacatctaatcttcacaactctgcgttgtagtatgattattattaccttgaccatttcac-----agaagactgaattaagagtggttaagtagcttgt-ccaggttcacaaagctggtaaatggc--caaca-gattcagacccagatggcct--------------tgctctcaaccactgttctgtacCCTCACCTGAAAACAGTCTGAATCAGAAATATGATGTCAAAAGTTGCCTT a score=2795.0 s hg17.chr17_random 1265792 17 + 2618010 TGAAAGATACGATATCg s panTro1.chr19 15748490 17 - 82489036 TGAAAGATACGATATag s canFam1.chr9 46553535 17 - 53642819 TGAAAGGTATAAAGTTG a score=365055.0 s hg17.chr17_random 1265809 3988 + 2618010 tcgggcacagtggctcacacctgtaatcctagcactttgggaggctgaggtgggcagaccacctgaggtcaggagttcaagaccagcctggccaacaaagggaaaccctgtctctactaaaacatacaaaaaattagctgggcgtggtggcaagcacctgtaaccccagctacttgggaggctgaggcaggagaattgcttgaatctgggaggcagaggttgcagtgagccgagatcacaccattgcactccagcctggacaacaagagcgaaactccatttcaaaaaaaaa--gactagcctgtccaacatggcaaaaccctgtctctactaaaaaatataaaaaattaggcaggtgtggtaacacacacctgtggtcccagctactcaggaggctaagatacaagcatcacttacacctgggaggtagaggttgcagtaagctgagatggtgccactgcactacagcccaggcgacaatgcaagacgccgtctcaaaaaaaaaaa-aaaaaGTCCTATCATTTATGACCAAGTTTTAGCTGATGTGTTAGTCCACTAGCAtagtccgcttaggttaccataacaaagtactacaggctgggaggcttagataacaaacatttatttttctcacatttctggatcacgaaatctgaaataagggtgccagagtggtcagtttccaggaagggcccccctctttggcgtccagatgaccatcgcctaattgtgtgctagcatgatctcttcattttagcacagagaagggagagtgaaagctctctggtgtctcttcttttttttttttttttagatggagtctcgccctgtcacccaggctggagtgcaatggcgcgatctcagctcactgcaacctctgcttcctggtttcaagtgattttcctgcctcagcctcccaagtaactgggattacaagtgcatgccaccacacctggctcatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttgaactcctgacctcatgatccacccacctcagcctcccaaagtgcttggattacaggcatgagccactgcgcccggcctgatggctctttttataaggacactaatctcatcatgagggccccaccctcatgaattcatctcaacctcccagaggccccatttccaaatactatcatactgggagttaggttttcaacatatgaatttttgagggggatgcaaacattcagttcttaataTCCATTCaccagcctgggcaacatagcgagatgccctcctccaaaccaccatctctacaaaaattaaaaaaaaaaaaaaaattagcagaggctgggagcagtggctaacgcctgtaatcccaacactttgggaggccgaggcaggtgggtcacttgaggtcaggagttcaagaccagcccagccaacatggtaaaaccctgtctctactgaaaatacaaaaattagccaagcgcggtggctcgtgcctgtagtcccagctactcgggaggctgaggcacaagaatcgctcgaacgcaggggcagaggttgcagtgagctgagattgtgccactgcactccagcttgagcaacagagtgacactctgtctaaaaaaataaataaataaaaataaaaaattagccaagcatgttggtatatgcctgtagtccccgctacttgggaggctgaggtgggaggatggcttgagcctgggaggtggaggctgcattgagccgagattgtaccactgcattccagcctaggtggcagagtgagatgctgtctcaaaaaaaaaaaaaaaaaaaTCCATTCAGATTATCTTCCTTCAAAATATGAATGTTGAGTTAAAACATGCAAAGAAAGAAAGAAAGGGGCCTGGAGCTGAGCTGGCTGAAAGACATAGGACCACCAGCTACTGAGGCTGAGGCCCTTTAGTTACTGTCTTTCTAGGCCGTCTTGTAAACTCATGTTTCAGTTCTGTGAACTATACAACATCCCTCAAACACACCACTTTCTCAAttttttcttctttttgagacagggtcttgctctgtcatccaggctggagtgcagtggcacgatcagagctccctgcagcctcaacctcctgggctgaagtgattctcgtacatcggcctcccaagtagctgagactacaagcatatgctaccacgcccagctaatttttgtttttttttgtagagatgggattttgccatgttgcccaagctggtctagaactcctgggctcaagagatctgcccaccccagcctcccaaagtgctgagattacaggtgtgagccaccgtgctcagccAAATACAGCCCTTTCTGATTTGAGTGTGGCAGCAATCCCTAATTCTCCACCAAAACTCATGTTTCACCTTCCATTTGGTCTACTTGTTGCTGGTAGATGGGTGGATGGGTGCCTAGCCAGTGACTCTACTTTTCAGTTTCCTTGGATCCAGGTGAGGCCATAAGTCTAGTTCAAGTGAAAGTAATGTATTTGCCTAATGGGTTAGCGCTTACAAAATGGTGTctctctctctctctcctttccctggcttgaagcagacaagcctggccacactgggagccctatgaggaaggtggtagagctgcaacatggaaggaacctgggtccctgtgtcaGccaaagagtctccaaacccatcctaggtttacttgcctgttcctgagtctgcgggtgggatggatgttcccagctgctggcagaacccccacgctggctttcttaccctctgcgtcagggctactgtggcaggcttggctaaatgaaagccattggtgctcccttccccacaaaaacagtaactcagaagcaaaactgcatccttggggaaactgcagagattagtgccacATATGGAGGCTCTTCAGTAAGGAACTATCCTCGTTTTGAGAAAGAGCTCTTGATCACCTACTGAACTCCAAATAAAAATGTAACCTgccaggtggggtggctcatgcctgtaatcccagtactttgggaggccgagatgggtggattgcttgagcccaagagttcaagaccagcctggggaacatggcaaaaccccatctctacaaaacatagctgggcgtggtggcatgcacctgtagtcccagctactcaagaggctgggacgggacgatcgcttgaacccaggaggtggaggttgcagtgagcagagatcataccaccacactccagcctaagtgacagaacaagaccctgtctcaaaaaaaaaaaaaaaaaaaTTAACCAGGCTTGGTGTGtagccagccctggtggcacgtgtctgtagtcccagacactcaggaggctaaagtgggagaatcacctgagcccaggaggtcgaggctgcagtgaaccatgtgatcatgccactgcgccatagcctgggtaacagatcaagaccctgtctcaaaaacaaataaaataaaaCCAatgtaatgtgagctactcatgacgaattgggggttatctgatcccatgaagttgggtgggcacagcagcactccataacgaagtagaagtgggatgggagggacctggaccaaaaggacccagaaggtagaagaaaactgcatgaacaagtgacttatgttcccagctgctgactcctgccagcagattacatctgtggcctcatgggacaatcaatgaccagcaagatgaaggtcaagctaggtgctctgcatactatgttgacattagctgaagtggattgctcctgaccgatggcctcacatgtaggcaacctaatatagttcggctatttgtttcctccaaatctcatgttgaaatttgactcccagtattggaggtggggcctagtgggaggcgtttgggtcatgagaacagatctcttagtaatggctggtgccctccccatggtaacaagggagttctgactgtcagttactgtgagatctgactctttttc---------ctttttctttctttttttttttttttt s panTro1.chr19 15748507 3989 - 82489036 tcgggtacagtggctcacacctgtaatcctagcactttgggaggccgaggtgggcagaccacctgaggtcaggagttcaagaccagcctggccaacacagggaaaccctgtctctactaaaacatacaaaaagttagctgggcgtggtggcaagcacctgtaaccccagctacttgggaggctgaggcaggagaattgcttgaatctgggaggcagaggttgcagtgagccgagatcacaccattgcactccagcctggacaacaagagcgaaactccatttcaaaaaaaaaaagactagcccgtccaacatggcaaaaccctgtctctactaaaaa-tataaaaaattaggcaggtgtggtgatacacacctgtggtcccagctatcaagaaggctaagatacaagcatcacttacacctgggaggtagaggttgcagtaagctgagatggtgccactgcactacagcccaggcaacaatgcaagacgccatctcaaaaaaaaaaacaaaaaGTCCTATCATTTATGACCAAGTTTTAGCTGATGTATTAGTCCACTAGCAtagtccgcttaggttaccataacaaagtactacaggctgggaggcttagataacaaacatttatttttctcacatttctggatcacgaaatctgaaataagggtgctagagtggtcagtttccagaaagggcccccctctttggcgtccagatgaccattgcctaattgtgtgctagcatgatctcttcattttagcacagagaagggagagtgaaagctctctggtgtctctt---ttttttttttttttagatggagtctcaccctgtcactcaggctggagtgcaatggcgcgatctcagctcactacaacctccgcttcctggtttccagtgattctcctgcctcagcctcccaagtaactgggattacaagtgcatgccaccacacccggctcatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctcgtgatccgcccatctcagcctcccaaagtgcttggattacaggcatgagccactgcacccagcctgatggctctttttataaggacactaatctcatcatgagggccccaccctcatgaattcatctcaacctcccagaggccccatttccaaatactatcatactgggagttaggttttcaacatatgaatttttgagggggatgcaaacattcagttcttaataTCCATTCatcagcctgggcaacatagcgagatgccctcctccaaacca---tctatacaaaaattaaaaaaaaaaaaaaa-ttagcagaggctgggagcagtggctaacgcctgtaatcccaacactttgggaggccaaggcaggtggatcacttgaggtcaggagttagagaccagcccagccaacatggtaaaaccctgtctctactgaaaatacaaaaattagccaagcgcggtggctcgtgcctatagtcccagctactcaggaggctgaggcacaagaatcactcgaacgcaggggcagaggttgcagtgagctgagattgtgccactgcactccaccttgagcaacagagtgacactctgtctaaaaaa-taaataagtaaaaataaaaaattagccaagcatggtggtgtatgcctgtagtccctgctactcgagaggctgaggtgggaggatggcttgagcctgggaggtggaggctgcattgagccgagattgcaccactgcattctagcctgggtggcagagtgagatgctgtct-aaaaaaaaaaaaaaaaaaaTCCATTCAGATTATCTTCCTTCAAAATATGAATGTTGAGTTAAAACATGCAAAGAAAGAAAGAAAGGGGCCTGGAGCTGAGCTGGCTGAAAGACATAGGACCACCAGCTACTGAGGCTGAGGCCCTTTAGTTACTGTCTTTCTAGGCCGTCTTGTAAACTCATGTTTCAGTTCTGTGAACTATACAACATCCCTCAAACACACCACTTTCTCACttttttcttctttttgagacagggtcttgctctgtcatccaggctggagtgcagtggcacgatcagagctccctgcagcctcaacctcctgggctgaagtgattctcgtacatcggcctcccaagtagctgagactacaagcatatgctaccacgtccagctaatttttgtttttttt-gtagagatgggattttgccatgttgcccaagctggtctagaactcctgggctcaagagatctgcccaccccagcctcccaaagtgctgagattacaggtgtgagccaccgtgctcagccAAATACAGCCCTTTCTGATTTGAGTGTGGCAGCAATCCCTAATTCTCCACCAAAACTCATGTTTCACCTTCCATTTGGTCTACTTGTTGCTGGTAGATGGGTGGATGGGTGCCTAGCCAGTGACTCTACTTTTCAGTTTCCTTGGATCCAGGTGAGGCCATAAGTCTAGTTCAAGTGAAAGTAATGTATTTGTCTAATGGGTTAGCGCTTACAAAATGGTGTctctctctctctctcctttccctggcttgaagcagacaagcctggccacactgggagccctatgaggaaggtggtagagctgcaacatggaaggaacctgggtccctgtgtcaGCCGAAgagtctccaaacccatcctaggtttacttgcctgttcctgagtctgcgggtgggacggatgttcccagctgctggcagaacccccacgctggctttcttaccctctgcgtcagggctactgtggcaggcttggctaaatgaaagccattggtgctcccttccccacaaaaacagtaactcagaagcaaaactgcatccttggggaaactgcagagattagtgccacATATGGAGGCTCTTCAGTAAGGAACTATCCTCGTTTTGAGAAAGAGCTCTTGATCACCTACTGAACTCCAAATAAAAATGTAACCTgccaggtggggtggctcatgcctgtaatcccagtactttgggaggccgagatgggtggattgcttgagcccaagagttcgagaccagcctggggaacatggcaaaaccccatctctacaaaacatagctgggtgtggtggcatgcacctgtagtcccagctactcaagaggctgagacgggacgatcacttgaacccaggaggtggaggttgcagtgagcagagatcataccaccacactccagcctaggtgacagaacaagaccctgtctcaaaaaaaaaaaaaaaaaaaTTAACCAGGCTTGGTGTGtagccagccctggtggcacgtgtctgtagtcccagacactcaggaggctaaagtgggagaatcacctgagcccagtaggtcgaggctgcagtgaaccatgtgatcatgccactgcgccatagcctgggtaacagatcaagaccctgtctcaaaaacaaataaaataaaaCCAatgtaatatgagctactcatgacgaattgggggttatctgatcccatgaagttgggtgggcacagcagcactccataacgaagtagaagtgggatgggagggacctggaccaaaaggacccagaaggtagaagaaaactgcatgaacaagtgacttatgttcccagctgctgactcctgccagcggagtacatctgtggcctcatgggACAATCAATGACCACCAAGATGAAGGTCAAGCTAGGTGCTCTGCATACTATGTTGACATTAGCTGAAGTGGATTGCTCCTGACCGATGGCCTCACATGTAGGCAACCtaatatagttcggctatttgtttcctccaaatctcatgttgaaatttgactcccagtattggaggtggggcctagtgggaagcgtttgggtcatgagaacagatctcttagtaatggctggtgccctccccatggtaacaagggagttctgactgtcagttactgtgagatctgactctttttctttctttttctttttctttctttctttctTTTTTTT a score=619689.0 s hg17.chr17_random 1270373 6777 + 2618010 aaaattagctgggaatggtggcgtatgattgtaatcccagctattcaggaggctgaggcagaagaatcacttgaacctgggaggaagaggttgcagtgagccaagatcgtgccactgcactctagcctgggtgacagagtgagactccatctcgaagcttcctgaagccctcaccagaaacagatactggcaccatacttcttgtacagcctgcagaaccatgagccactaaacctcccctttttaaaaaaatataaattacctagcctcaggtcttcctttataacaatacaaaatggactaacacacagctctgaaggaaagtaagcagtcaaactccctagtgggtagaaccttgaagcatgcagctggtacatatttttctgaaagagcagatatcccgaggtgagatccacactgattcccaaacagtgaaaaccagcttagctggctggtTGGTATAAGGGTCATTAATTttatttatgttgcccagcagatatgcacacctctattaaaagagtaattcctaactttcctgcaggaaccagcgctcacccacaccagtccatgtggttggatgaggttgactccctaccctgggtggactctaactggcataagccaaggaggaaacccttcccctaggtcacaggtatggtttcatggagagcatataactcaatagggactggtaagaatcaggcctgggactttgactaataggggtgagatgtacttcctctacacttggaattatgataatggatgtaaagtctggagctgttgtaaatattttaccactgtaaggaaagagcctggagcctgtctgaaaatagagtgacaatagaacaaagtagaacaggttcaagagagacaccagattctgatttcttttattgtatttatttatttatttatttatttatttatttatttatttatttttgagacagagtctcactctgttgctcaggctggagtgcagtggtgcgatctcggctcactacaagatctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggattacaggcacccgccaccacgcccggctaatttttttttttttttttttttttttttttggacttttagtagagatggggtttcactatgttagccaggatggtcttgatctcctgacctcgtgatccgcccgcctcggcctccctgatttcttttaaacccctaatcaagacacatctgaaaggcagacctatctctggacttttttttttttttttttttttgagacagagttttactccgtctccccaggctggagtgcagtggcgtgatcttgactcattgcaaccgccacttcctgggttcaagcgattttcctgcctcagcctccctagtagctgggattacaggtgcatgccaccccgtctggctaatttttgtatttttttgtagagacagggtttcactaggctggtcctaaactcctgacctcaggtgatccgcccgcctcgggctcccaaagtgctggtattacaggcgtgagccaccgtgcctggccCAGCCTTCTTTTTTATCATTGAATAATGTTCCATTGTATGTTTGTATAccaaggtaggaggatcgcttgagcccaggagtttcgagactagcctgggcaaaatgacaagacgccatctctacaaaaaataaaaaatatattagctgggcatgatggtgcattcctgtacacagctacctgggagattgaggcagaggatcactggagcccaggagtttgaggttagcagtgatcacgccactgcactccagtctgggcaacaaagcaagaccctgtctcaaaaaaaaaaaggaaagaaaagaaaaaaaaTCTGAAAAAGAAattccattatatggatgtaccacagtttgtttatccattcacctatggaagcacatcttggttggttcaaattctggcaattatgaataaagctgctataaacagttgtgtgcaggtggagatttttgtgtagacatacgttttcaactcacttggataaataccatggattgcgattgctggatggtatggtaagactatgtttacctttgtaagaaactgccaaactatcttttgaagttgctgtaccattctgcattcccactagcaatgaatgagagttcctcttgttccatatcctcaccagaatttggtgttgtcagtgttttgcattttagccattacaatagatgtgtagcggtatctcattattttgatttgcaattccataatttcactgtgaggtgagtttcttGGTTGGAGCAGTGTTGTCTCTTTGGGAATCCATGACAGCATAAAAGACTTGCAAAGTGAAAGGAGGggccgggcgcggtggctcatgtctgtaatcccagcactttgggaggccgaggtgggcggatcatgagatcaggagtttgagaccaggctggtcaacatggtggccccatttctactaaagatacaaaaatttagctgggcgtagtggcacgcgactgtaatcccagctactcgggaggctgggggaggagaatcgcttgaacctggaaggcgcaggttgcactgagccgagatcatgccactgtacgccagcctgggcgacagggcaagactccgtctcaaaaaaaaaagaaaGTGAatggatggtggtgctggcagcagagtgacacattggaaagtaaatatggcccaatccagataaaatgtctcttcctcctgatctattatggaaagggtccaatgttattgtcatgatcaccaggtaattgaatggtcccttcagggtgtgaagccaacatcagggctggttgggcccccggcagaaatagtagccagaccagactcagtagtaggaagtgaatgatactgagcgtatgcatagcctctgtctctgctgccttggccatgtggttcatgatcccattaagcaagcactagcctggcaggggaaggaggatgatggacatctgcagagcaggccatcatggccacctgaatattaatagcctattccacagtggaggcctttgggtgaacatccatataactcaaatccacaccttctaagttcattccaaaagatccatacatctaccccttctccaaaccacctttgttgtcaatcctatcttcctctcacaaattcctgaGtgtattgtttatgactcttttggttgcaagaggcagaagacccaatcctaaattggcttatgagtaaaggaatttgccacctcaaataaGAAggctgggtgcagtggctcatgcatgtaatccctgcactttggtaggttgaggtaggaggatcacttgaagccaggggtttgtgtaaccaacagagggagaccccctttttctacaaaaaaaaaaaaaaa--------ttatccaggtgtggtggtgtgcacctgtagtatcaggtacttgggatgctgtggcaggacaattgcttgaacccaggagtttggggctgcagtgagctatgattgagccactgcactccagcctgggtgactgagcaagaccctgtctctaaaaaaaataataataataacaaaaGTCCAgaccgggcgtgggggtcgtgcctgtcatcccagcgctttgggaggccaaagccggtggatcacctgaggtcaggagttcgagaccagcctggccaactccagtagagatggcaaaactctgtctctactaaaaatacaaaaattagctagccatgatgtgattcaggagaatcacttgaacttgggaagcagaagttgcagtgagctgagattgagccactgcactcctgcctgggtaatagagcaagactgtctcaaaaaaaaaaaaaa-gaaagaaagaaaagaaAAGAAggctgggcatggtggctcatgcctagaatcccagcagtctgggaggctgaggtgggcagattgcttgagtccaggagtttgagaccagcctgggcaacatggtgaaacctggtctctacaaaaaatataaaaattagccaggcatggtggtgcacgcctgtcatcccagctacttgggaggctgaggcggaaggatcatttgagcctgggagttggaagctgcagtaagacgtgattgcatcactgcactccagcctgggcaacagagtgagaaccagtctcaaaaaaacaaGCAGATcgggcatggtggctcacacctgtaatcccagcactttgggaggccgaggcagatagatcacttgaggtcaggagtttgagtttgagaccagcctggccaaaacagtgaaaccccgtctctactgaaaatacaaaatataggccgggtgcggtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagcctggccaacgtggagaaaccccatctctactaaaaatacaaaaattagccaggtgtggtggcatgtgcctgtaatcccagctactccagaggttgaggcaggagaattgcttgaacccaggagtggaggttgcagtgagccgagctcatagccactgcactccagcttgggtgacagagtgagactccatctcaaaaaaaaaaaaaaaaaaa--------ttcagccaggcatggtggcacacacctatagtccctgctacttgggagtctgaggcaggagacagaattgcttgaacccagaaggtggaggttgcagtgagccgagatcgtgccacttaactccagtctggacaacacagcaagactccatctcaaaaacaaaCTtacaaagaaacaaacaagcaagcaaaaattgagctatcaatccatgagaaaaacatgcagaaaccttaaatgcatattgccaaatgaaggaagccagtctgaaaaggctacacattgtatgattccaactacagtaaatgacattctagaaaagataaaactatggagacaaaaaagattagtggttggggccacgtgcagtggctcacacctgtaatactagtgctttgggagactgaggcgggcggatcacgaggtcaggagttcgagaccagcctggccaatatggtaaaaccccgtctctactaaaaaatacaaaaattagccggccatggtggcttgtgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacccggaaggcggaggttgcagtgagccgagattgtgccactgcactctagcaagggtgacagagcgagactccatttcaaaaaaaaa------------gattagtggttggaaagggtttcaggggaggaaggggagaatgaataggtggaataaggcattttaaaggcagtgaaactattctgtgtgatactgtaattgtggatatatgacattatacctttgtcaaaaaccatagaatgcacaatacaaagagtgaaccctgcaagtatcaactatggactttactaataatgtatattaaatattattattaatattaattattatattgttaatgaagttaattataatgtatcagtattagtttatcaattgtaacgaatataccatactaatgcaagctgttaataacgggaaattggtgagggaaagtgaaggaatatacaggtaccctctgtactttccactcaatatttctgcaaacctaaaactgataaaaaataataaagtcaattAATTAAGAAAATATgctgcaatgtgaaaactagagcatatcaccaaactgtctgtattctgttacattaaaatccattagtctggccgtgcggtggtggctcattagtctgtactccacttggatgcatattttacctttacccatgcaggaatatcgaacattatgcactggtcatttgaaacacgttacactaagaggtatgcagatcttccaagtgttgacacattgaattgtacaacatcaaaacattgcactcattaaacagaaatgtctttaagtatttgaaagctatcaagcttacagtggtggatacaaagtttcaagcttttaaatgttcccttgacggtttttttgtttttttgttttttgtttttttgagacggagtctcgctctgtcgccaggctggagtgcactggcgccatctaggctcattacaacccccgcctcccaggttcaagcggttctcctgcctcagcctcccgaatagctgggactacaggcgcgtgccaccacgcccagctaattttcgtgtttttagtagagatggggtttcaacatgttggccaggatggtcttgatctcttgacttcgtgatctgccctcctcggcctcccaaagtgctgggattacaggcctgagccaccgcacccggccttcccttgaaaatgtaggttatttcattagccacaaacagtgcatattgttttccttgaagcgacatgctcactttgttcattttctaaaaattatctgcaaaatgcccaactctgaataatctagtttgtcggtcagttgttccttcagtgaaaattcggtacgactgaaaagcagctagttcggagtgcaactccaacatcccacaagtgctttactcaagcaaaaaccattgtattttggtatgcgtagaggtgatttattcatacttcccattgtcaaagaaaatattaaaaagctgtgcactcaagcgttgaaacttaatacacttaattattcttacagcgtcaccaaggatatgcttcagtaaacctggctttttccctctgccagtgcacgaaggtaaagaatatgactcttattagtttagttcaaatgccttaaatttgcta s panTro1.chr19 15753073 6745 - 82489036 aaaattagctgggattgctggcgtatgattgtaatcccagctactcaggaggctgaggcagaagaatcacttgaacctgggaggaagaggttgcagtgagccaagatcgtgccactgcactctagcctgggtgacagagtgagactccatctcgaaGCTTcctgaagccctcaccagaaacagatactggcatcatacttcttgtacagcctgcagaaccatgagccactaaacctcccctttttaaaaaaatataaattacctagcctcaggtattcctttataacaatacaaaatggactaacacaCAGCTCTGAAGGAAAGTAAGTAGTCAAACTCCCTAGTGGGTAGAACCTTGAAGCATGCAGCTGGTACACATTTTTCTGAAAGAGCAGATATCCTGAGGTGAGATCCACACTGATTCCCAAACAGTGAAAACCAGTTTAGCTGGCTGGTTGGTATAAGGGTCATTAATTttgtttatgttgcccagcagatatgcacacttctattaaaagagtaattcctaactttcctgcaggaaccagcgctcacccccaccagtccatgtggttggatgaggttgactccctaccctgggtggactctaactggcataagccaaggaggaaacccttcccctaggtcacaggtatggtttcatggagagcatataactcaatagggaccggtaagaatcaggcctgggactttgactaataggggtgagatgtacttcctctacacttggaattatgataatggatgtaaagtctggagctgttgtaaatattttaccactgtaaggaaagagcctggagcctgtctgaaaatagagtgacaatagaacaaagcagaacaggttcaagagagacaccagattctgatttattttattgtatttatttatttatttatttattt--------------------ttgagacagagtctcactctgttgctcaggctggagtgcagtggtgcgatctcggctcactacaagatctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagttgggattacaggcacccgccaccacacccgactaatttttttttttgt------------------atttttagtagagatggggtttcactatgttagccaggatggtcttgatctcctgacctcgtgatccgcccgcctcggcctccctgatttcttttaaacccctaatcaagacacatctgaaaggcagacctatctctggactttttttttatttttt------gagacagagttttactccgtctccccaggctggagtgcagtggcgtgatcttg--------caaccgccatttcctgggttcaagcgattttcctgcctcagcctccctagtagctgggattacaggtgcatgccactccgtctggctaatttttgtatttttttgtagagacagggtttcactgggctggtcctaaactcctgacctcaggtgatccgcccgcctcgggctcccaaagtgctggtattacaggcatgagccaccgtgcctggccCAGCCTTCTTTTTTATCATTGAATAATGTTCCATTGTATGTTTGTATAccaaggtaggaggatcgcttgagcccaggagtttcgagactagcctgggcaaaatgacaagatgccatctctacaaaaaataaaaaatatattagctgggcatgatggtgcattcctgtacacagctacctgggagattgaggcagaggatcactggagcccaggagtttgaggttagcagtgatcacgccactgcactccagtctgggcaacaaagcaagatcctgtctcaaaaaaaaaa-ggaaagaaaagaaaaaaaaTCTGAAAAAGAAattccattatatggatgtaccacagtttgtttatccattcacctatggaagcacatcttggttggttcaaattttggcaactacgaatacagctgctataaacagttgtgttcaggtggaggtttttgtgtagacatacgttttcaactcacttggataaataccatggattgcgattgctggatggtatggtaagactatgtttacctttgtaagaaactgccaaactatcttttgaagttgctgtaccattttgcattcccactagcaatgaatgagagttcctcttgttccatatcctcaccagaatttggtgttgtcagtgttttgcattttagccattacaatagatgtgtagcggtatctcattattttgatttgcaattccataatttcactgtgaggtgagtttcttGGTTGGAGCAGTGTTGTCTGTCTGGGAATCCATGACAGCATAAAAGACTTGCAAAGTGAAAGGAGGggccgggcgcggtggctcatgtctgtaatcccagcactttgggaggccgaggtgggcggatcatgagatcaggagttcgagaccaggctggtcaacatcgtggccccatttctactaaagatacaaaaatttagctgggcgtagtggcacgcgactgtaatcccagctactcgggaggctgggggaggagaatcgcttgaacctggaaggctcaggttgcagtgagccgagatcatgccactgtacgccagcctgggcgacagggcaagactccgtctcaaaaaaaaaagaaaGTGAatggatggtggtgctggcagcagagtgacacattggaaagtaaatatggcccaatccagataaaatgtctcttcctcctgatctattatggaaagggtccaatgttattgtcatgatcaccaggtaattgaatggtcccttcagggtgtgaagccaacatcagggCTGGTTGGGCCCCCAGCAGAAATAGTAGCCAGACCAGACTCAGTAGTAGGAAGTGAATGATACTGAGCGTATGCATAGCCTCTGTCTCTGCTGCCTTGGCCATGTGGTTCATGATCCCATTAAGCAAGCACTAGCCTGGCAGGGGAAGGAGGATGATGGACATCTACAGAGCAGGCCATCATGGCCACCTGAATATTAATAGCCTATTCCACAGTGGAGGCCTTTGGGTGAACATCCATATAACTCAAATCCACACCTTCTAAGTTCATTCCAAAAGATCCATACATCTACCCCTTCTCCAAACCACCTTTGTTGTCAATCCTATCTTCCTCTCACAAATTCCTGAGtgtattgtttatgactcttttggttgcaagaggcagaagacccaatcctaagttggcttatgagtaaaggaatttgccacctcaaataaGAAggctgggtgcagtggctcatgcatgtaatccccgcactttggtaggttgaggtaggaggatcacttgaagccaggggtttgtgtaaccaacagagggagaccccctttttctaaaaaaaaaaaaaaaaaaaaattaattatccaggtgtggtggtgtgcacctgtagtatcaggtacttgggatgctgcggcaggacaattgcttgaacccaggagtttggggctgcagtgagctatgattgagccactgcactccagcctgggtgactgagcaagaccctgtctctaaaaaaaataataataataacaaaaGTCCAgaccgggcgcgggggtcgtgcctgtcatcccagcgctttgggaggccaaagccggtggatcacctaaggtcaggagttcgagaccagcctggccaactccagtagcgatggcaaaactctgtctctactaaaaatacaaaaattagctagccatgatgtgattcaggagaatcacttgaacttgggaagcagaagttgcagtgagctgagattgagccactgcactcctgcctgggtaatagagcaagactgtctcaaaaaaaaaaaaaaagaaagaaagaaaaGAAAAGAAggctgggcatggtggctcatgcctagaatcccagcagtctgggaggctgaggtgggcagattgcttgagtccaggagtttgagaccagcctgggcaacatggtgaaacctggtttctacaaaaaatataaaaattagccaggcatggtggtgcacgcctgtcatcccagctacttgggaggctgaggcggaaggatcatttgagcctgggagttggaagctgcagtaagacgtgattgcatcactgcactccagcctgggcaacagagtgagaaccagtctcaaaaaaaCAAGCAgaccgggcatggtggctcacacctgtaatcccagcactttgggaggccgaggcagatagatcacttgaggtcaggagtttgagtttgagaccagcctggccaaaacagtgaaaccccgtctctactgaaaatacaaaatataggctgggtgtggtggctcacacctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagtttgagaccagcctggccaacatggagaaaccccatctctactaaaaatacaaaaattagccaggtgtggtggcatgtgcctgtaatcccagctactccagaggttgaggcaggagaattgcttgaactcaggagtggaggttgcagtgagccgagctcatagccactgcactccagcttgggtgacagagtgagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaattcagccaggcatggtggcacacacctatagtccctgctacttgggagtctgaggcaggagacagaattgcttgaacccagaaggtggaggttgcagtgagccgagatcgtgccactgcactccagtctggacaacacagcaagactccatctcaaaaacaaaCTtacaaagaaacaaacaagcaagcaaaaattgagctatcaatccatgagaaaaacatgcagaaaccttaaatgcatattgccaaatgaaggaagccagtctgaaaaggccacacattgtatgattccaactacagtaaatgacattctagaaaagataaaactatggagacaaaaaagattagtggttggggccaggtgcggtggctcacacctgtaatactagcgctttgggagaccgaggcgggcggatcacgaggtcaggagttcgagaccagcctggccaatatggtaaaaccccgtctctactaaaaaatacaaaaattagccggccatggtggcttgtgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacctggaaggcggaggttgcagagagccgagatcgcgccactgcactctagcaagggtgacagaacgagactccatttcaaaaaaaaaaaaaaaaaaaaagattagtggttggaaagggtttcaggggaggaaggggagaatgaataggtggaataaggcattttaaaggcagtgaaactattctgtgtgatactgtaactgtggatatatgacattatacctttgtcaaaagccatagaatgcacaatacaaagagtgaaccctgcaagtgtcaactatggactttaataataatgtatattaaatattattattaatattaattattatattgttaatgaagttaattataatgtatcagtattagtttatcaattgtaacaaatataccatactaatgcaagctgttaataacgggaaattggtgagggaaagtgaaggaatatacaggtaccctctgtactttccactcaatatttctgcaaacctaaaactgataaaaaataataaagtcaattAATTAAGAAAATATgctgcaatgtgaaaactagagcatatcaccaaactttctgtattctgttacattaaaatccattagtctggccgtgcggtggtggctcattagtctgtactccacttggatgcatattttacctttacccatgcaggaatatcgaacattatgcactggtcatttgaaacacgttacactaagaggtatgcagatcttccaagtgttgacacattgaattgtacaacaccaaaacattgcactcattaaacagaaatgtctttaagtatttgaaagctatcaagcttacagtggtgaatacaaggtttcaagcttttaaatgttcccttgacggtttttttgtttttt--------gtttttttgagacagagtctcgctctgtcgccaggctggagtgcactggcgccatctaggctcattacaacccccgcctcccaggttcaagcggttctcctgcctcagcctcccgaatagctgggactacaggcgcgtgccaccacgcccagctaattttcgtgtttttagtagagatggggtttcaacatgttggccaggatggtcttgatctcttgacctcgtgatctgccctcctcggcctcccaaagtgctgggattacaggcctgagccaccgcacccggccttcccttgaaaatgtaggttatttcattagccacaaacagtgcatattgttttccttgaagcgacatgctcactttgttcattttctaaaaaatatctgcaaaatgcccaactctgaataatctagtttgtcggtcagttgttccttcaatgaaaattcggtacgactgaaaagcagctagttcggagtgcaactccaacatcccacaagtgctttactcaagcaaaaaccattgtattttggtatgcgtagaggtgatttattcatacttcccattgtcaaagaaaatattaaaaagctgtgcactcaagcgttgaaacttaatacacttaattattcttacagcgtcaccaaggatatgcttcagtaaacctggctttttccctctgccagtgcacgaaggtaaagaatatgactcttattagtttagttcaaatgccttaaatttgcta a score=7252.0 s hg17.chr17_random 1277150 57 + 2618010 tttcacccgctattgcttctgcac---catcggtgcaaa-tgtcaac--gcaataaataaCCT- s panTro1.chr19 15759818 57 - 82489036 tttcacccgctattgcttctgcac---catcggtgcaaa-tgtcaac--gcaataaataaCCT- s rn3.chr10 96379505 64 + 110733352 TCTCACCCACTACTGCTCACACACCATCATCAAGGCAAATTAGCAACCACCAAATAATAATTTG a score=27087.0 s hg17.chr17_random 1277207 148 + 2618010 GTTTTCATGAAAAGCATTTCCTGAATGCCTCAGAGTTCACAGGCCAAGGATAACAAG-GA------TAACACATCACACGCAGA----CTAAATTAGAAAGATATGCACCAAAATGTTAATACATTTTGTAGGAGTGGTTAACTCCGACTTACAGAATT s panTro1.chr19 15759875 155 - 82489036 GTTTTCATGAAAAGCATTTCCTGAATGCCTCAGAGTTCACAGGCCAAGGATAACAAAAGAGTTAAGTGACACATCACACGCAGA----CTAAATTAGAAAGATATGCACCAAAATGTTAATACATTTTGTAGGAGTGGTTAACTCCGACTTACAGAATT s rn3.chr10 96379569 132 + 110733352 GTGTTTAAGAAGACCCTTTCCCCGATGCATAGGGACTCACAGGCTACAGGTAATAAAAGA-GGGAGTGAC-CATCGCTCAT-------CAAAATGGGAAAGGCATATATCAG---------ACATT---------TAGTTAACTCCGAGCGGTAAAATT s canFam1.chr9 46554163 135 - 53642819 GTTTTCATCAAAAGCATTTCCTTAATGACTCAGGGTCCACAGG-------GAATAAAACA-----GTGACATATGACACACAGACACGTaagatttcaaagatacacaccgaggtgttaat------------cgtggtaagctccacatggtagaatt a score=913.0 s hg17.chr17_random 1277355 5 + 2618010 TCGAt s panTro1.chr19 15760030 5 - 82489036 TCGAt s canFam1.chr9 46554298 5 - 53642819 ttggt a score=85315.0 s hg17.chr17_random 1277360 929 + 2618010 tttctttttttttccccctagacagagtcttgctctatcgcccagagtggagtgcagtagtgcaatcccgcttcgctgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctccccagtacctgggattacaggcacgcgccaccacggcccactaatttttgtattcttggtagagacggggtttcaccatgttggccgggctggtctcgaactcttgacctcataatccgcccgcctcggcttcccaaagtgctgggattacaggcgtgagtcaccgcgcacggtcCC-----------------ttttttttttttttttgaaagagtcttgctctatcacccaggctgcagtgcaatggcgagatctcggctcactgcagcctccgcctccccggttcaagcgattctcctgcctcaccctccgaagcagctgggactacaggcgctcgccaccacgccccggtaatttttgcatttttagtagagattagggttcacctttttggccaggctggtctcgaacttctgacctaaagggaaccgcccgtttgggcatctcaaaatgctgggattacaggcgtgagccaccgagcccggccCAATTTCGATTTTCTTTACCTGGC-------------TTATCttttttttttttttttttttgagaccgtcttgctctgtcgcccaggctggagtgcagtggcacaatctcggtttacagcaacctccgcctcccaggttcaagcgattctcctgcctcagtttccctggtagctggaattacaggcgcacgccaccaaacgcctggctaatttttttgtatttttagtagagacagggtttcaccacgttggccaggctggtctccaactcctgacctcaagtgatccgccagcctcagcctcccaaagtgctgggattacaggcaggagccaccacgcccggcc s panTro1.chr19 15760035 956 - 82489036 tttctttttttttccccctagacagagtcttgctctatcgcccagagtggagtgcagtagtgcaatcccgcttcgctgcaacctctgcctcccaggttcaagcgattctcctgcctcagcctccccagtacctgggattacaggcacgcgccaccacggcccgctaatttttgtattcttggtagagacggggtttcaccatgttggccgggctggtctcgaactcttgacctcataatccgcccgcctcggcttcccaaagtgctgggattacaggcgtgagtcactgcgcacggccCCCCtttttttttttttttttttttttttttttttgaaagagtcttgctctatcacccaggctgcagtgcaatggcgagatctcggctcactgcagcctccgcctccccggttcaagcgattctcctgcctcaccctccgaagcagctgggactacaggcgctcgccaccacgccccggtaatttttgcatttttagtagagattaggtttcacctttttggcctggctggtctcgaacttctgacctaaagggaaccgcccgtttgggcatctcaaaatgctgggattacaggcgtgagccaccgagcccggccCAATTTCGATTTTCTTTACCTGGCttttttttttttttttttttttttttttttttttttttgagac---cttgctctgtcgcccaggctggagtgcagtggcacaatctcggtttacagcaacctccgcctcccaggttcaagcgattctcctgcctcagtttccctggtagctggaattacaggcgcacgccaccaaacgcctggctaatttttttgtatttttggtagagacagggtttcaccacgttggccaggctggtctccaactcctgacctcaagtgatccgccagcctcagcctcccaaagtgctgggattacaggcaggagccaccacgcccggcc a score=3971.0 s hg17.chr17_random 1278289 24 + 2618010 GGCTTAGCCATATTTTAAACAGAC s panTro1.chr19 15760991 24 - 82489036 GGCTTAGCCATATTTTAAACAGAC s canFam1.chr9 46554324 24 - 53642819 ggttcacccatacttcatacaatt a score=3179.0 s hg17.chr17_random 1278313 26 + 2618010 TTGTGAAGAACAAGTGTTACGTGTCT s panTro1.chr19 15761015 19 - 82489036 TT-TGAAGAACAAGTGT------TTT s rn3.chr10 96380023 20 + 110733352 TTGCAAAGAACAGGGAT------TTT s canFam1.chr9 46554348 26 - 53642819 ctacaatgaacaggcgttaGGTGTCT a score=3959.0 s hg17.chr17_random 1278339 38 + 2618010 AA--GAAGAAAAC---GAAATTG-------TGTATTTGTAAAAATCACAA s panTro1.chr19 15761034 37 - 82489036 AAAGGTAGAAAAC---GAAATTG--------GTATT--GAAAAATCACAA s mm5.chr11 106683308 40 + 121648857 --AGGAATAAAACTCTGAAACTC--------TTACTTTTAAAACCTACAA s rn3.chr10 96380051 47 + 110733352 GGGGGGAAAAAAC--TGACACTGTTTTTTTTTTTTTTTTTAAATCTACA- s canFam1.chr9 46554374 39 - 53642819 -AAGGAGACAAAC---GAAATTA-------TCTATTTTTAAAAACCACGA a score=6616.0 s hg17.chr17_random 1278377 115 + 2618010 ATGCAGCATCTTTACATGCAACAAACATACAGATAGTGTGCATGGCACCAGAAAGTCTCCAAGTCTTTACTCAAAACTTAACTTCAGG-------ATGTTGGTTGAGGGAAGGGGGAAGCCA s mm5.chr11 106683348 80 + 121648857 -TACGGCCT-TTTACACGCAGCAAACACAT--------TTCATGAAACCGGAAA-----CCAGTC---ATCCGAGATCTAGCTATAGG------------------------GCGAAAAACT s rn3.chr10 96380098 81 + 110733352 ACGCGGCAT-TTTACTTACAGCAAACAAAC--------CTCATGAAACCAGAAG-----GAAGTT---CTCTGAGCTCTAGCTATAGG------------------------GCGGAAAAAA s canFam1.chr9 46554413 120 - 53642819 AAGCGGCATCTTCACGTGCAACAAGCATAGACATACTGCGCGTGGCACCAAAAAGTCTCTGAATC-TTATCCAAGACCTAG-GATAGGataaaaaataataataataataaataaaaaaGCA a score=91.0 s hg17.chr17_random 1278377 1 + 2618010 A s panTro1.chr19 15761071 1 - 82489036 A a score=112209.0 s hg17.chr17_random 1278492 770 + 2618010 AACCCGTACTATTTTGCACTTAGGGACTTT--GTTATGTTCATTTTCCC-TTTACTCCAGAGGGAAAGAAGAGTCAGGGGGAGGAAAACGGCT--------GAAGGTGAATGGCCGTAGGGACAAAGGTCAGATTTGAA--GTTCTCGTGGGGTGGAAAAGCctgttcacccaggagc---ccaacagttcccagcaca-taacaggttatcacattaatctctgctgaataaacgCGGGAAAGA-------AAGAGAAGACAGGGACAAGAAGGTTG--------------GCGGGAGAGGGAAGCTGCGGGAGGATTTCGCGATCTGcagtggctcccaacgccgcctgccctgcagagggt--------------cccggggagctttgtaaaatgaagacgcccaggtccgccccagtcaactgaactagaatg--ggatg-gggcaggcactggaaccttgtttaaaattccccaggtgagcccaatggacaactggagttaagaacGCT-TGAAGAACCCGACAGGAAGGATAGCACCC-----AAACCCGGCGGGGTGGATGCCATGCAGTTACCGGG-CAGGAGAGCTCGGAGGGTCACGCGCAGGCCCTCCGGGGCCCTTGCGGCCGCTCCGGGCCCATGGCGCAGCGCGCGGGAAG--TCCAGGCGGCCGACAGGGACGC----AGAAAAGCGCAggcgcgcgccgccgccgctgggggcggcTGCCAAATCACTTGCCTCTCGGCGCGAGACCGCGATGCGCGG-GGGCGGGAGCGTGATGATGGCATCGCGTAAGGAGAGGGTGTGAGAAGCCGGATCCTGTGGTGA s panTro1.chr19 15761195 770 - 82489036 AACCCGTACTATTTTGCACTTAGGCCCTTTAGGTTAT--TCATTTTCCC-TTTACTCCAGAGGGAAAGACCTTTCAGGGGGAGGAAAACGGCT--------GAAGGTGAATGGCCGTAGGGACAGAGGTCAGATTTGAA--GTTCTCGTGGGGTGGAAAAGCCTGTTCACCCAGGAGC---CCAACAGTTCCCAGCACA-TAACAGGTTATCACATTAATCTCTGCTGAATAAACGCGGGAAAGA-------AAGAGAAGACAGGGACAAGAAGGTTG--------------GCGGGACAGGGAAGCTACGGGAGGATTTCGCGATCTGcagtggctcccaacgccgcctgccctgcagagggt--------------cccggggaactttgtaaaatgaagacgcccaggtccgcccaagtcaactgaactagaatg--ggatg-gggcaggcactggaaccttgtttaaaattccccaggtgagcccaatggacaactggagttaagaacGCT-TGAAGAACCCGACAGGAAGGATAGCACCC-----AAACCCGGCGGGGTGGATGCCATGCAGTTACCGGG-CAGGAGAGCTCGGAGGGTCACGCGCAGGCCCTCCGGGGCCCTTGCGGCCGCTCCGGGCCCATGGCGCAGCGCGCGGGAAG--TCCAGGCGGCCGACAGGGACGC----AGAAAAGCGCAggcgcgcgccgccgccgctgggggcggcTGCCAAATCACTTGCCTCTCGGCGCGAGACCGCGATGCGCGG-GGGCGGGAGCGTGATGATGGCATCGCGTAAGGAGAGGGTGTGAGAAGCTGGATCCTGTGGTGA s mm5.chr11 106683428 564 + 121648857 AAAAAGTATTATTTTGTATTTAGAGACTCT--GTC-T--TCATTTCCCCTTTTAATCTAG----------------GGGGGAGGGAGAGGGCT--------G--GGGAGACGGATGTTGGGAAAGAGGGCAGGTCAGAA--GTTTCCTTGGGCTGGAAGAGCCTGT--------GAGT---CCA--------CAGCACATTAATAGGTAACCAAGTCTATGTTTGCTGAA-----ACGGGAAA--------------------------------------------------CGAGACTGGAAAGCCCAGGGAGG----------TTAAGGTGGCTGAGACAG--------------AAAGGT--------------CCCGGG--ACTTT-----------------------------GCCAATTCGAATGGAGGA--GGAGG-GCACAG---CAGGAGC--TGTTTATAGTTTCCCTGCGGAGCCTAACGCGCGAATATAG---------------AGAGCTCGCCC----------CACAA-----AAACCCCTC-----------------------------TGAGAAGCCGGACACCCACG-GCAGACACTCTAAACAGACTGCGA--GCCTTGG--CTGTGGCGCAG-GCGCAGTAAGATTCTGGCCGG--GGCGGCGGCGCGAGAAGAAGTGCGCAAGCGCACTC----------GGCATCGTAAGCCAAAGAA------------CGCGAAGTTGC--TGCGCGGTGGGTGGGGCTGCGATGATCGAATCACGTAAGGAGAAGGAGTGAGAACCCAGACTTTGTAGTGA s rn3.chr10 96380182 590 + 110733352 --AAAGTATTATTTTGTATTTAGAGACCTT--GTC-T--TTATTTCTGCTTTTAATCTAGGGGGA-----------GGGCTGGGGAGACGGGT--------G--------------TTGGGAAAGAGGGCAGATC------GTTTCGTTGGGCTGGAAGAGCCTGTACACCCTTGAATATGCCAAGAGTCCACAGAACA----CAGGTAACCAAGTCTATGTTTGCTGAA-----AGGGGAAA--------------------------------------------------CGAGGCTGGAAAGCCCAGGGAGT----------TTAAGGTGGCTGAGACAG--------------AAAGGT--------------CCCGGG--ACTTTGCCAAATGCAGACGCTGTGTCCTGCCCAAGGCCAGAGAATTCGAATGGAGAAGG-GCACAG---CAGGGGC--TG--------TCCCCAGAAAAACCCTCTGAGAAAGCCGGACACA-----------CGTTCCCCAAAAGGATGACTGCGCCACGAAGAAACCCCACGCTGTCTGTCCTA----------------ACAGACAGTGAA-----------------TCTGAG---------------------CTGTGGCGCAG-GCGCAGTAAGATTCGGGCCAGGGGGCGGCGGCGCGAGAGGGCCTGCGCAAGCGCATTC----------GGCAGCACACGGCAAAGAA------------CGCGAGGTTGC--AGCACGGAGGGTGGGGCTACGATGATCAAATCACGTAAGGAGAGCGAGTGAGAACTCGGATCCCGTGGTGA s canFam1.chr9 46554533 738 - 53642819 AATCCATATTAT-----ATTAATGGACCTT--GTTATATCCATTTCTCC-TTTAATTCGGAAGGAAAGCAGAGAA-AGGGGAGAAAAATGGATTTAATCGAGGAAGAAAATGCATATTTGtaaaaaaaaaaaaaaaaaactttttttaaacttttaaaaaGGCTGTTCCTGCTGTAATCCCCCAAGAGTCCCCAGGACA-TCCCAGTTTATGATACAGCTACAGGCTGAC----CGCGGGCAAGAGAAAAggaggggcaggacgggacgcgaaggttgcggggcgtgcaggtgcgggccggggcgtgcaggtgcgg--gccggggcgtgcaggtgcgggccggg-CGCCAGCTCCGCAGGAGGCGGCACCGGCGCGGGCCCAGG-AACTTTGTAAAATGCAGACGCGCGGGCTCATCCAGCTACACACAATTAGCACG--GAGGGAGGACAGGCACTGGAACTTCGTCTAAGTTTCCCCCAGCGCGCGTGACGCGCCGCCAAGACGGAGAACCTTCCGAGGAGCCCCGCCTGCGGACAGCCGCTC-----TCAGCCGCCCGCGTGCCGGCCACGCAGCCGCCGGGCCCCGGGAGCCGGGAGGGCTACGCGCAGGC----------------------------------GCACGG-GGGCGGGAGG-----------------AGGGCGC----AGGGG-GCGCAGGCGCGCGCTGTCGCTGCTgggggcggcgcccgg----------------cgcggggccgcggagcgcg--gggcgggg-cgcgATGATGGCATCGCGTAAGGAGACGGTGTGAGAACCCGGATCCTGTGGTGA a score=600.0 s hg17.chr17_random 1279262 1 + 2618010 c s panTro1.chr19 15761965 1 - 82489036 c s mm5.chr11 106683992 1 + 121648857 C s rn3.chr10 96380772 1 + 110733352 C a score=7039.0 s hg17.chr17_random 1279263 73 + 2618010 ccagtggcctaatggataaggcatcagcctccggagctggggattgtgggttcgagtcccatctgggTCGCGT s panTro1.chr19 15761966 73 - 82489036 ccagtggcctaatggataaggcatcagcctccggagctggggattgtgggttcgagtcccatctgggTCGCGT a score=8133.0 s hg17.chr17_random 1279336 36 + 2618010 GAGATTAGTTTTGGTGGAAGAGAGGGCGATCATTGG s panTro1.chr19 15762039 36 - 82489036 GAGATTAGTTTTGGTGGAAGAGAGGGCGATCATTGG s canFam1.chr9 46555346 36 - 53642819 GAGATTAGTTTTGGTGGAGAGGGAGGCGGTCGTGGG a score=161426.0 s hg17.chr17_random 1279372 1733 + 2618010 ACAGTTGATTGAGAGATGGTTCTTGGCAGCTATCGTTATCACAAATAAAGAGGTGCTTTTGAGAGTTTTAAAAACACTGTCAGCGaatgggtactaaaatacggtcagacctggtgttcggtagcacagtagggtaattatagctaacggtaatttactgtatatttcaaagtagctagaagaaaatatttgaaatgctcctaacacaaagaaatgatcagtgtttgaggtgacagctatcccagttaccctgatttgatcattacacattatacgaatgtaacacaatatcacttgttattcggggtggggtggctcacgcctgtaattccagctctttaggaggccaaggcgagagaatcacttgagtccgggagtttgagaccagcctgggcgacataaggagacgacaccacccccaaccccaacctccccagaaaaaaattttaaaattagcagtaagttataatatgattgggccactgcactccagcctgggtaacggagcgagaccctgtctcaaaaaacaaaaacaaaaaaattcaaaatcaatatgaagtatcaatctttaaaaagaaTTTAAAAACCAGGCCAtggctcattcctgtaatcccagcacttcgggaggccgaggcgtcacctgaggtcaggagttcgagaacagactgaccaactgttgaaatactaaatagaaaaaattagccgggcgtggtggcgcatgcctgtagtcccaactacttgggaggctgaggcaggagaatcgcttgaacccgcgagatggaggttgcagtgagccaagattgcgccattgcactcaagcctgggcaacaagagcgaaactctgtctcaaaaagaaaaaaaaaaaaattaaaaaaCCAAAATggccgggcacggtggctcacgcctgtaatcccagcactttcggaggccgaggcAAAAAACACTGTCATTGAGAGCTTGCAAGTGAACACGAAATCTGACCCCTAAAAAGAAATATTTACTTAAAAAAAAAAA-TTCTTggctgggcacggtggctcacacctgtaatcctagcactctggaaggccgaggcaggcggatcacccgaggtcagaagttcaagaccagcctggccatggtgaaaccccgtctttactaaaaacacaaaaaattagccaggcgtggtggtgcgcgcctgtaattccagctactcgggaggctgaggcaagagaatcgcttgaaccggggaggcggaggttgcagtgagccgagatcacgccattgcgctccagcctgggcaacaagaacgaaactccgtctcaaaaaaaaaaTTCTTTTAggccggccgcgatggctcacaactgcaatcccagccctttgggaggccaaggcgggcggatcacctgaggtcaggagttcaagaccaacctggccaacatggtgaaatcctgtctctactaaaaatacaaaaattagccgggcgtggtggcgcatgcctctaatcctagctactctggaagctgaggcaggagaatcgcttgaacccggaagctggaagttgcagtgagccgagagccgagatggtgccattgcactccagcctgggtgacagagccagactccctcttaaaaaaataataataataaaaataaaaaTTTTAAAAAGTGTTtttccccagcattattgagatataattgacaaataaaaattgcacacattGAGGAAGCATTTATTCTTGCTTAACTTATACTGA s panTro1.chr19 15762075 1734 - 82489036 ACAGTTAATTGAGAGATGGTTCTTGGCAGCTATCGTCATCACAAATAAAGAGGTGCTTTTGAGAGTTTTAAAAACACTGTCAGCGaatgagtactaaaatacggtcagacctagtgttcggtagcacagtagggtaattatagctaacggtaatttactgtatatttcaaagtagctagaagaaaatatttgaaatgctcctaacacaaagaaatgatcagtgtttgaggtgacagctatcccagttaccctgatttgatcattacacattatacgaatgtaacacaatatcacttgttattcggggtggggtggctcacgcctgtaattccagctctttaggaggccaaggcgagagaatcacttgagtccgggagtttgagaccagcctgggcgacataaggagacgacaccacccccgaccccaacctccccagaaaaaaaattttaaattagcagtaagttataatatgattgggccactgcactccagcctgggtaacggagcgagaccctgtctcaaaaaacaaaaacaaaaaaattcaaaatcaatatgaagtatcaatctttaaaaagaaTTTAAAAACCAGGCCAtggctcattcctgtaatcccagcacttcgggaggccgaggcgtcacctgaggtcaggagttcgagaacagactgaccaactgttgaaatactaaatagaaaaaattagccaggcgtggtggcgcatgcctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacccgcgagatggaggttgcagtgagccaagattgcgccattgcactcaagcctgggcaacaagagcgaaactctgtctcaaaaagaaaaaaaaaaaaattaaaaaaCCAAAATGgccgggcacggtggctcacgcctgtaatcccagcactttcggaggccgaggcAAAAAACACTGTCATTGAGAGCTTGCAAGTGAACACGAAATCTGCCCCCTAAAAAGAAATATTTACTTAAAAAAAAAAAATTCTTggctgggcacggtggctcacacctgtaatcccagcactctggaaggccgaggcagccggatcacccgaggtcagaagttcaagaccagcctggccatggtgaaaccccgtctttactaaaaacacaaaaaattagccaggcgtggtggtgcgcgcctgtaatcccagctactcgggaggctgaggcaagagaatcgcttgaaccggcgaggcggatgttgcagtgagccgagatcacgccattgcgctccagcctgggcaacaagaacgaaactccgtctcaaaaaaaaaaTTCTTTTAggccggccgcgatggctcacaactgcaatcccagccctttgggaggccaaggcgggcggatcacctgaggtcaggagttcaagaccaacctggccaacatggtgaaatcctgtctctactaaaaatacaaaaattagccgggcgtggtggcgcatgcctctaatcctagcaactctggaagctgaggcaggagaatcgcttgaacccagaagctggaagttgcagtgagccgagagccgagatggtgccattgcactctagcctgggtgacagagccagactccctcttaaaaaaacaataataataaaaataaaaaTTTTAAAAAGTGTTtttccccagcattattgagatataattgacaaataaaaattgcacacattGAGGAAGCATTTATTCTTGCTTAACTTATACTGA a score=12635.0 s hg17.chr17_random 1281105 66 + 2618010 TTTTTAAAAGAAAAAGACCTTAGCAAACACAAACTGGTGACTAGACATGTGGCATCATCTCttttt s panTro1.chr19 15763809 66 - 82489036 TTTTTAAAAGAAAAAGAACTTAGCAAACACAAACTGGCGACTAGACATGTGGCATCATCTCttttt s canFam1.chr9 46555567 66 - 53642819 TTTTTTAAGAAAAAAATCCTTAGGGAGCACGACCTGCCGACTAGACAGATGGCATCACCCCCCTTT a score=13001.0 s hg17.chr17_random 1281171 138 + 2618010 ctgtctacttttttttgtgtgtgtgagacggagtctcgatattgtagcccaggctgcagtgcaatggcgcgatcttggctcactgcaacctctgtcccacaggttcaagcgattctgctgcctcagccttctgagtTC s panTro1.chr19 15763875 138 - 82489036 ctgtctacttttttgtgtgtgtgtgagacggagtctcgatattgtagcccaggctgcagtgcaatggcgcgatcttggctcactgcaacctctgtcccacaggttcaagcgattctgctgcctcagccttctgagtTC a score=49150.0 s hg17.chr17_random 1281309 354 + 2618010 TGTCTACTTTTTCAAGCTGAGATTAACAATGGGCAGCCACACTTACAAAACTTTGTCCCTATTCTTATCCCAAGGGACGTGTGAGCAGGTCCAACTGTGCTGGCCT----CAGATTTCCAGGACGGTACCAAGGAAAGTTTACAGCAGAGTAACTGTGGAGTTACCCCATACAACT--ATGATAAACATAATTTATTGTTGCTGTCTTCAAAATATTATGAACAACAAATTGTAATTAGAACAGTTTGTGTGTTTGTGCATATGTGT--GTGTGTGAGAGATCTGCAAATTAGTGAAATAAAAAAA-ACACACAATAATCAGAGTTTAAGCCTTTCAGACCAGTTCAGTTGACTAGCTTGAAA s panTro1.chr19 15764013 355 - 82489036 TGTCTACTTTTTCAAGCTAAGATTAGCAATGGGCAGCCACACTTACAAAACTTTCTACCTATTGTTATCCCAAGGGATGTGTGAGCAGGTCCAACTGTGCTGGCCT----CAGATTTCCAGGACGGTACCAAGGAAAGTTTACAGCAGAGTAACTGTGGAGTTACCCCATACAACT--ATGATAAACATAATTTATTGCTGCTGTCTTCAAAATATTATGAACAACAAATTGTAATTAGAACAGTTCGTGTGTTTGTGCATATGTGT--GTGTGTGAGAGATCTGCAAATTAGTGAAATAAAAACACACACACAATAATCAGAGTTTAAGCTTTTCAGACCAGTTCAGTTGACTAGCTTGAAA s canFam1.chr9 46555633 338 - 53642819 GGTCCACCTTCTCTAGCATAGCTTCACGGTGGGCAGCCACACGTGCAGAGCTCCCCCCGCCCGCCCACCGTCAGGGGTGTGGGAGCCCTCCCGGC-GCGCTGGCTCCGAACAGATTCCCTTG-CAGCACTAAGGACGGTTTATAGGGAAGCCACGGTGCTGTTGCAACGGACATGTTGATAGTAAACGCATTTTGTGGTTTCTATTCTC-AAGCATTATGAACAATGGATGG-----------ATGTGTG-GTTTGGGGGTATGTGTCGGTGTATGTTTCATTTGCAAATTCATGTAATAAAAGAA-ATA---------CAGACTTTCAGCTTTTCAGACCAGTTCAGTTGGCCGTCTTGAAA a score=29166.0 s hg17.chr17_random 1281663 314 + 2618010 AttttatttatttatttatttttgagacagagtcttgctcttttgcctaggatggagtgcggtgccatgatgggggctcacttcaactccacctcccaggttcaagcgattctcatgcctcagcctccagagtagcctgaattacaggaatgcgccacgacgcctggctaatttttatatttttagtggagatggggtttcaccatgttgcccaggctggtcttgcactcctgacgtcaggtgatccatccgcctcaatctaccaaagtgctgagattacaggcatgacccactgcacctggccTAGCCTGGAC s panTro1.chr19 15764368 314 - 82489036 AttttatttatttatgtatttttgagacagaatcttgctcttttgcctaggatggagtgcagtgccatgatgggggctcacttcaactccacctcccaggttcaagcgattctcatgcctcagcctccagagtagcctgaattacaggagtgcgccacgacgcctggctaatttttatatttttagtggagatggggtttcaccatgttgcccaggctggtcttgcactcctgacgtcaggtgatccatccgcctcaatctaccaaagtgctgagattacaggcatgacccactgcacctggccTAGCCTGGAA a score=50524.0 s hg17.chr17_random 1281977 330 + 2618010 AGTTTAAACTCTTCTTGC-ACACTTGTACAAAAGGAACATCCACTGAGTTCATCACTACTCTTTAAAAACAACTAAACactaaatgcagtgtggtatcctgggttgaagtctgaaacag-aaaaggatattagtggaaaaaaagcagtggactcaaatactgtacagtgtggaatttcattactagtaatgtaccagtgttgatttcttagttttgacaaatatacatagtgacgtaagatgttaacattag--------ggttaagggatacaccagaactctgccctacatttgcagcttttctgtaaatctgaatttattccaaaataaaaagtgta s panTro1.chr19 15764682 330 - 82489036 AGTTTAAACTCTTCTTGC-ACACTTGTACAAAAGGAACATCCACTGAGTTCATCACTACTCTTTAAAAACAACTAAACactaaatgcagtttggtatcctgggttgaagtctgaaacag-aaaaggatattagtggaaaaaaatcagtggactcaaatactgtacagtgtggaatttcattactagtaatgtaccagtgtagatttcttagttttgacaaatatacatagtgacgtaagatgttaacattag--------ggttaagggatacaccagaaccctgccctacatttgcagcttttctgtaaatctgaatttattccaaaataaaaagtgta s canFam1.chr9 46555971 307 - 53642819 AGTTTAAA--CTTCTTGCAACACTCGTACAAGAGGAGTA-CCAGCGGGTT-ACTTCTACTCTTTAGAAACAACTAAATacaaaatgcaatatgctaccctggatttgaacctcaaacagaaaaaggacgttagggagaaagggagaa----------------acagtctggagcttagtta-----gatatgccaacacgcagtgcttc-ttacgtcaaatgtacatggtgac-------gttaacatcagtgcaaactggctgacgggtgtaggagccctctgttctgtctttgcaacttctctgtaaatctgacattattccaaaattaaaacttta a score=10757.0 s hg17.chr17_random 1282307 73 + 2618010 ttaaaagaAAACCCAACTA-----CTAATAACCAGTGGAGAATTTTAACGGACACCTTTGTCC-----CTTAAGATTAGAAAT s panTro1.chr19 15765012 73 - 82489036 ttaaaagaAAACCCAACTA-----CTAATAACCAGTGGAGAATTTTAACGGACACCTTTGTCC-----CTTAAGATTAGAAAT s canFam1.chr9 46556520 83 - 53642819 cCaaattaaaattttattaaaaaCCAAAGAACCAGTGGAGAAACAGGACTGATATCCTTACCCACTTTTTTAAGATTAGGAAT a score=12100.0 s hg17.chr17_random 1282380 132 + 2618010 TAGgccaggcgcggtggctcacgcctgtaatcccagcactttgagaggccaaggtgagcagatcacgaggtcaagagatcgagaccGAGCACTTAGTGCTGAATGTTTAAACCAGAAAGCATTAATAAATAC s panTro1.chr19 15765085 132 - 82489036 TAGgccaggcacggtggctcacgcctgtaatcccagcactttgagaggtcaaggcgagcggatcacgaggtcaagagatcgagaccGAGCACTTAGTGCTGAATGTTTAAACCAGAAAGCATTAATAAATAC a score=12817.0 s hg17.chr17_random 1282512 95 + 2618010 AGAAGACCAA-GAATAATTTCCAGTTCAATTTCTGGTAGGTATCTCAGAGTTGAATATTGGTGGCCACATTAGGTCCTTGG--ATGCAGTAGGTATTC s panTro1.chr19 15765217 95 - 82489036 AGAAGACCAA-GAATAATTTCTAGTTCAATTTCTGGTAGGTATCTCAGAGTTGAATATTGGTGGCCACATTAGGTCCTTAG--ATGCAGTAGGTATTC s rn3.chr10 96382732 80 + 110733352 AGAAGACAAAGGAACAGTTTCTACCTGTATTC------------------TTGAGAATTGGTGACTCCATTAAATCTTAAAACATGCAGTAGTTATTT a score=59553.0 s hg17.chr17_random 1282607 649 + 2618010 AAAAAATCTGAACTGAggccaggtgaagtggctcatgcctgtaattccaacacttggggaagccgaggcgagaggatcacttgagcccaggagttcaagaccagcctgggaaacacggtgaaatccccatctcaacaacaaaattaaaaaaaaaaaattagcctggtgtgcagtagcacacacctgtggtcccagctactcaggatgctgaggtcagaggatccctttagcccaggagattgaggctgcagtgagctgtgttcatgccactgcactccagcctgagtaacagagcgagacgctatctcaaaacaaacaaaaCggccagatgcagtagctcacgcctgtaatcccagcactttgggaggtcgaggcaggcagatcacaaggtaaggagttcgagaccagcctggtcaatatggtgaaagcccgtgtctaataataatacaaaaattagccgggcatagtggcacggtcctgtagtcccagctactcaggagactgaggcaaaagaatcgcttgaacgcgggaggcgaaggttacagtgagcagagattgcgccactgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaaaaacaaaacaaacaaacaaaaaAAAACTAAACTGCATGG s panTro1.chr19 15765312 646 - 82489036 AAAAAATCTGAACTGAggccaggtgaagtggctcatgcctgtaattccaacacttggggaagccgaggcgagaggatcacttgagcccaggagttcaagaccagcctgggaaacacggtgaaatccccatctcaacaacaaaattaaaaaaaaaaa-ttagcctggtgtgcagtagcacacacctgtggtcccagctactcaggatgctgaggtcagaggatccctttagcccaggagattgaggctgcagtgagctgtgttcatgccactgcactccagcctgagtaacagagcgagacgctatctcaaaacaaacaaaaCggccagatgcagtagctcacgcctgtaatcccagcactttgggaggtcgaggcaggcagatcacaaggtaaggagttcgagaccagcctggtcaatatggtgaaagcccgtgtctaataataatacaaaaattagctgggcatagtggcacggtcctgtagtcccagctactcaggagactgaagcaaaagaatcgcttgaacccgggaggcgaaggttacagtgagcagagattgcgccactgcactccagcctgggcaacagagtgagactctgtctcaaaaaaacaaacaaa-caaacaaacaaaaaaaA-CTAAACTGCATGG a score=15659.0 s hg17.chr17_random 1283256 140 + 2618010 TCTCCTGTCCCCCACCTGCAGGCAGCGTCTGGAAATTACAGACAGTGACAATGTATCCTTGGTCCCTCAAATGCACAGATATTGGAATGTGCAGCCCCCAAGGCTGGGCACAACAAACTCATCCTGGGTTCTCTGCCCTT s panTro1.chr19 15765958 140 - 82489036 TCTCCTGTCCCCCACCTGCAGGCAGCGTCTGGAAATTACAGACAGTGACAATGTATCCTTGGTCCCCCAAATGCACAGATATTGGAATGTGCAGCCCCCAAGGCTGGGCACAACAAACTCATCCTGGGTTCTCTGCCCTT s rn3.chr10 96383067 121 + 110733352 TTTCGTGCCTTCCACTGAGAGATAGCA-CTGGGGAC----AATAGTAGCACTGTGTCC-TAGTCACCCAAATGCA--------AGATTGTG-----CTCAGGAGTGACAGGTTTAGATCCCTCAGGCACTCTCTGTTTCT a score=0.0 s hg17.chr17_random 1283396 7 + 2618010 TGAGCTT a score=1486.0 s hg17.chr17_random 1283396 7 + 2618010 TGAGCTT s panTro1.chr19 15766098 7 - 82489036 TGAGCTT s mm5.chr11 106685681 7 + 121648857 TGGGTTT a score=45072.0 s hg17.chr17_random 1283403 159 + 2618010 CTGACAGCGGCTCAGTCCTCCACGGTGCTCATCTGCCTCTCCCACCTCCTTCCCCTCCTTTAGCCTCCTTGTGAGCCCAGCTCCTTCTCTCTGGAAGATGTTTCTAGCCTCACTCACCATAGTCCATTGAGCTGGAGTCAGCAAACAGTGATTGAGTGC s panTro1.chr19 15766105 159 - 82489036 CTGACAGCGGCTCAGTCCTCCACAGTGCTCATCTGCCTCTCCCACCTCCTTCCCCTCCTTTAGCCTCCTTGTGAGCCCAGCTCCTTCTCTCTGGAAGATGTTTCTAGCCTCACTCACCATAGTCCATTGAGCTGGAGTCAGCAAACAGTGATTGAGTGC s mm5.chr11 106685688 151 + 121648857 CTCCGGGCTTCACAGTCCTCCACGGGGTTCACCCCCTCATCCCTCATCTCTCTCTCTCTCTAGCCTTCTT---ACCCCGGCTC---CTCTCTGGCAGATGTTTCTCAGCTCCTTCACCACAGTTCATTCAGCT-AAGTCAGCTGACC-TCACTGAGTGC s rn3.chr10 96383188 150 + 110733352 CCGCAGGCTTCACAGTTCTCCACAGGGCTCGCCCCATCGTCCCCCCTCATTC-CTCTCTTTAAACTCCTT---ACCGCAGCTC---CTCTCTGGCAGATGTTTCGCAGCTCGCTCACCATGGCTAATTCAGCT-AAGTCAGCTGACT-TCACTGAGTGC a score=14162.0 s hg17.chr17_random 1283562 39 + 2618010 CTTTACTTTGTCCCTCTGCTGGCTCTTGCCTCGGAGTCC s panTro1.chr19 15766264 39 - 82489036 CTTTACTTTGTCCCTATGCTGGCTCTTGCCTCTGAGTCC s mm5.chr11 106686046 39 + 121648857 CTTGAGTTGGCCCCTCTGCCGGCTCTTTCCTTTGAGCCC s rn3.chr10 96383545 39 + 110733352 CTTGAGTCGGCCCTTCTGCGGGCTCTTTACTCTGAGCCC a score=2261.0 s hg17.chr17_random 1283601 16 + 2618010 AAAAACATTCTGCAAg s panTro1.chr19 15766303 16 - 82489036 AAAAACATTCTGCAAg s rn3.chr10 96383584 16 + 110733352 CAAGGCATTCCAACAG a score=25969.0 s hg17.chr17_random 1283617 302 + 2618010 gctgggcgtagtggctcaagcctgtaatcccagagttttgtgaggccgaggtgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaacctgtctctactaaaaatacaaaaagtagccaggcgtggtcacacatacctgtaatcccagacactcaggaggctgaggcaggagaatcgcttgaacccacgaggcagaggtttcagtgagctgagatcacaccattgcactccagcctgggtgacagagcaagactccgacacaaaaaaaacaaaaaaagaaaaa s panTro1.chr19 15766319 293 - 82489036 gctgggcgtagtggctcaagcctgtaatcccagcgttttgtgaggccgaggtgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaacctgtctctactaaaaatacaaaaagtagccaggtgtggtcacacatgcctggaatcccagacactcaggaggctgaggcaggagaatcgcttgaacccatgaggcagaggtttcagtgagctgagatcgcaccattgcactccagcctgggtgacagagcaagattccaacacaaaaaaac---------aaaaa a score=4979.0 s hg17.chr17_random 1283919 45 + 2618010 CATTCTGCAGGTTGCAGGTTCTCCACCCATTCCAAGCTCAGCCCC s panTro1.chr19 15766612 45 - 82489036 CATTCTGCAGGTTGCAGGTTCTCCACCCATTCCAAGCTCAGCCCC s rn3.chr10 96383600 42 + 110733352 CAT--CGCAGGCGCCAAAGACCTCCCCCAGGCT-AGCCCACTCCC a score=14866.0 s hg17.chr17_random 1283964 156 + 2618010 GGGCCTATGGCGCTTCTCACAAGTCCTGTTTGCCCTCTCTCCGAGCAGTCAGGCTGCATCATGAGTGTTGTCTACGTGTCCAGAGTCTCCTCTTCACTTgctgtcctccctccactgccacctgacacactcctccccagcagtggcctcttcata s panTro1.chr19 15766657 156 - 82489036 AGGCCTATGGCGCTTCTCACAAGTCCTGTTTGCCCTCTCTCCGAGCAGTCAGGCTGCATCATGAGTGTTGTCTACGTGTCCAGAGTCTCCTCTTCACTTgctgtcctccctccactgccacctgacacactcctccccagcagtggcctcttcata a score=15785.0 s hg17.chr17_random 1284120 78 + 2618010 gacaaatttaaggaacaccttt-cagtccttgtcttgcttaacttagccctgacatttgaaactcctaacgaatctttc s panTro1.chr19 15766813 78 - 82489036 gacaaatttaaggaacaccttt-cagtccttgtcttgtttaacttggccctgacatttgaaactcctaacgaatctttc s canFam1.chr9 46556979 79 - 53642819 GGCAAATTTAAGACACACCTTTCCAGTCCTTATCTTGCTTAACATTACTCTGAAGATTGAAGCTCCTGACCAGTCCTTC a score=54064.0 s hg17.chr17_random 1284198 317 + 2618010 ttctggaaacacactttttctaggcttccaggaaatct--ttttcttggttctccagacaactcctt---agactccttgaccaactccctctcgttgccAATGATGGAAACAAACCAGCCCTACCTAAACAAAGCACATTATAACTCACTGGAAAGATAGAGGGGAGGGGGTGCCCACTAAACCACTAAAGAGACAGGAGGTGGGGAGCTGTAGGACCAGGTTTGGGAACCTGCAAG-AATCAAGACCAG------------AGCCCCTGAAATAGCAAGAAGCTGGAAGCACAACAAATGTCAGAGCCAGA--------------TGGCCGTCACTGTAGTCAGCGC s panTro1.chr19 15766891 317 - 82489036 ttctggaaacacactttttctaggcttccaggaaatct--ttttcttggttctccagacaactcctt---agactccttgaccaattccctcttgttgccAATGATGGAAACAAACCAGCCCTACCTAAACAAAGCACATTATAACTCACTGGAAAGACAGAGGGGAGGGGGTGCCCACTAAACCACTAAAGAGACAGGAGGTGGGGAGCTGTAGGACCAGGTTTGGGAACCTGCAAG-AATCAAGACCAG------------AGCCCCTGAAATAGCAAGAAGCTGGAAGCACAGCAAATGTCAGAGCCAGA--------------TGGCCGTCACTGTAGTCAGCGC s canFam1.chr9 46557410 326 - 53642819 ttcttgaaacactcttttcccaggcttccggaaaagcccatttcctcagttctccaaacaacttcttttcaatctcctttgctagttctctctAGGTGCCAACAATGGAAACAAACCAGCTCAACCTAAGCAAAGCAAATAATAATTCGTTGGAAAGACATGGGGGAAGGGGAGCAC------TCATTAAATAG-CAGG--------------GCAATCAGGCTCAGGAACCGGCAAGAAATCAAGGACAACCAATGCCCCCCCGCCCCCAAAAT--CAAGAAGCTGAAAGCACAGTGACTCTCATAGCCAGAAATGCCTGGTTCGGAGGCCGCCACTGCTGTCATCAC a score=41650.0 s hg17.chr17_random 1284515 452 + 2618010 CTCTGAttgattgtttgtttgtttgtttgtttgagatggactcttgctctgttgcccaggctggagtgcagtggcaggatctcggctcactgcaacctccatctcctgg-ttcaagcaattctcctgcctcagcctcctaagtaactgagactacaggctctcgccaccatgcccaactaattttttatatttttagtagagacggggttttaccatgttggtcaggctggtctcgaactcctgacttcagctgatccacttgccttggcctcccaaagtgctgggattacaggtgtgagccaccatgcccggccaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctgaaactcctgacctcaaatggcccacccatctcagcctcccaaagtgctgggattacaggcatgagccaccatgcctggccACG s panTro1.chr19 15767208 453 - 82489036 CTCTGAttatttgtttgtttgtttgtttgtttgagatggactcttgctctgttgcccaggctggagtgcagtggcaggatctcagctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcctaagtaactgagactacaggctctcgccatcatgcccaactaattttttatatttttagtagagacggggttttaccatgttggtcaggctggtctcgaactcctgacttcagctgatccacttaccttggcctcccaaagtgctgggattacaggtgtgagccaccatgcctggccaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtctgaaactcctgacctcaaatgacccacccatctcagcctcccaaagtgctgggattacaggcatgagccaccatgcctggccACG a score=16145.0 s hg17.chr17_random 1284967 87 + 2618010 TCTGATGGTTTTCATCATCCTCGGGCCACTTGCTCCTGAATCAAGGTTCCAGACAAAAATCTTACAATTAGTCCAGCTTTGGCCAGG s panTro1.chr19 15767661 86 - 82489036 TCTGATGGTTTTCATCATCCTCGGGCCACTTGCTCCTGAGTCAAGGTTCCAGACAAAA-TCTTACAATTAGTCCAGCTTTGGCCAGG s canFam1.chr9 46557773 85 - 53642819 TCTGACAGTTCTCTTCATCCTCGGGCCACTTGCTCTGGAATCAAGTTTTCA-ACGAAATGCTTAGAATT-GCCCAGCTTGGATCAAG a score=119946.0 s hg17.chr17_random 1285054 1303 + 2618010 CTCAGtgtgttggttaatattgagtgtcaacttgattggattgaaggatacaaagtgttgatcctgggtgtgtctgtgagggtgttgccaaagaagattagcatttgagtcagtgggctgggaaaggcagacccacccttaacctgagtggacacaagctaattagctgccagcagagctagaatataagcaagcagaaatatgtgaaaagagagactagcctagtctcccagccgactttctcccatgctggatgcttcctgccctcgaatatctgactccaagttcttcagttttggaacttggactgcctctccttgctcctcagcctgcagaccgccttttgtaggaccttgtgatcatgtgagttaatacttaataaactcctataatacttaatatacttaatacttaataaactcctatatatagttctgtccctctagagaaacctaacACACTcagtgactcacacctgtaatcccagtactttgggaggttcaggaaggagaatgccttgagccccagagtctccatctccttctccctctccttccccctccctctccccttcctcttcttcctcttc---ttcttcctcttcctcttcttcttgtttgagataagatcattgccaaggctggagtgtagtggcacaattgtagtggcactgcttctcaacctcctgagtgaggatcacaccaccacactcctgcctgggtgacagagcaagaccttgtctctgaaaacaaacaataaacaaacaaaaaaCTCTGCTGTGATAGAGGTGAATTGTCTGTTTTATCCTGATAATTCTGCTTCCTTTATTCCCgtggttctcaactgggccaattttgctccccaagtaacatttggcaatatctggagatttgcaattgtcacagtggaactggaaggggttgctattaacatctagtgggcagaggtcggggatgctgcttaacatcttaaaccacacaggacagtcccccacaaaaaaatgatgatccaggccgagcgcggtggctcacgcctgtaatcccagcactctgggaggccgaggcggatggatcacctgagatcaggagttcaagaccagcctgagcaacatgatgaaaccccgtctctactaaaaatacaaaaagtagccaggtgtggtggtgggtgcttgtaatcccagctacttgggaggctgaggcaggaggatcgcttgaacccaggaggcagaagttgcagtgagccgagatcgtgtcattgcactctaacgtaggtgacagagcaagacaatgtctcaaaaaaaaaaaaa s panTro1.chr19 15767747 1302 - 82489036 CTCAGtgtgttggttaatactgagtgtcaacttgattggattgaaggatacaaagtgttgatcctgggtgtgtctgtgagggtgttgccaaaggagattagcatttgagtcagtgggctgggaaaggcagacccacccttaacctgagtggacacaagctaattagctgccagcagagctagaatataaacaagcagaaatatgtgaaaagagagactagcctagtctcccagctgactttctcccatgctggatgcttcctgccctcgaatatctgactccaagttcttcagttttggaacttggactggctctccttgctcctcagcctgcagaccgccttttgtaggaccttgtgatcatgtgagttaatacttaataaactcctataatacttaatatacttaatacttaataaactcctatatatagttctgtccctctagagaaacctaacACACTcagtgactcacacctgtaatcccagtactttgggaggttcaggaaggagaatgccttgagccccagagtctccatctccttctccctctccttccccctccctctccccttcctcttcttcctcttcgtcttcttcCtcttcctcttctt---gtttgagacaagatcattgccaaggctggagtatagtggcacaattgtagtggcactgcttctcaacctcctgagcgaggatcacaccaccacactcctgcctgggtgacagagcaagaccctgtctctgaaaacaaacaataaacaaacaaaaaaCTCTGCTGTGATAGAGGTGAATTGTCTGTTTTATCCTGATAATTCTGCTTCCTTTATTCCCgtggttctcaactgggccaattttgctccccaagtaacatttggcagtatctggagatttgcaattgtcacagtggaactggaaggggttgctattaacatctagtgggcagaggtcggggatgctgcttaacatcttaaaccacacaggacagtcccccacaaaaaaatgatgatccaggccgagcgtggtggctcacgcctgtaatcccagcactctgggaggccgaggtgggtggatcacctgagatcaggagttcaagaccagcctgagcaacatgatgaaaccccgtctctactaaaaatacaaaaagtagccaggtgtggtggtgggtgcctgtaatcccagctacttgggaggctgaggcaggaggatcgcttgaacccaggaggcagaagttgcagtgagccgagatcatgtcattgcactctaacctaggtgacagagcaagacaatgtctcagaaaaaaaaaa- a score=32617.0 s hg17.chr17_random 1286357 209 + 2618010 gatgatccagcccaaaatgtcaactgtgtcaaggggaagaaacTGCCGTAAAGCCTTGG-AAACAGGGATGGTATG-ATGAATTATTGATAGGCCAC-AGTAAAACATTT-AGGGCCACATTGATTGTCCCTGTTTTAACGATTTCTTCTTTCT-CCCCATGCACTTTCAGGGGCAAAGTAAGGACATAAGTCAAA-GGTGGTTCCAAATAGACA s panTro1.chr19 15769049 210 - 82489036 gataatccagcccaaaatgtcaactgtgtcaaggggaagaaacTGCCGTAAAGGCTTGGCAAACAGGGATGGTATG-ATGAATTATTGATAGGCCAC-ATTAAAATATTT-AGGGCCACATTGATTGTCCCTGTTTTAACGATTTCTTCTTTCT-CCCCATGCACTTTCAGGGGCAAAGTAAGGACATAAGTCAAA-GGTGGTTCCAAATAGACA s canFam1.chr9 46560619 212 - 53642819 AATAATCTGGCCCCAAATGTCAATATTGCCCAAATCTAAGAACTCCCTTAGAGACTTG--ACATAGAGATGGTCTGAATATATTATTGATGAGCCTCAAGAAAAACATTTCAGGGCCTTATCAATTGTCCCTGTTTCTATCATCTTTCCTTTGTCCCCCAAGCAGCCTCAGGGACACACTGAGGA-GTAGGTCAAAGGGTACCACCAAATGGACA a score=47639.0 s hg17.chr17_random 1286566 261 + 2618010 TCTGGGAAT-CTTA---------GGGTGTAATATGGCCCTCGTGGAGGCCCTTGCTGAGTTTAGGGCCTGATTCTGGAACCCTAGCATTGCCAAGAGAGGCAGGCTGCCAGGTGAGAAGACAAATAATGGGAGAGCCCAAATATGTTGGAATTCATTTGATAGTATCTAAGCTGGGGCGATTTTCCCCACTAGCATTACATGACTATGGATCCAGTTATTTGGAGAAATCCATTTCCTCCACAGGGAATATACATTACA-TTAGAACCAAAG s panTro1.chr19 15769259 261 - 82489036 TCTGGGAAT-CTTA---------GGGTGTAATATGGCCCTCGTGGAGGCCCTTGCTGAGTTTAGGGCCTGATTCTGGAACCCCAGCATTGCCAAGAGAGGCAGGCTGCCAGGTGAGAAGACAAATAATGGGAGAGCCCAAATATGTTGGAATTCATTTGATAGTATCTAAGCTGGGGCGATTTTCCCCACTAGCATTACATGACTATGGATCCAGTTATTTGGAGAAATCCATTTCCTCCACAGGGAATATACATTACA-TTAGAACCAAAG s canFam1.chr9 46560989 268 - 53642819 TCTAGGGATGCTCACGGTAAGCTGGGTGTAAAGCTGCCCTCACTGAGGCCTTTGCTGAGTCAAGTGCCTGATTCTGGAGACCTAAGCTCACCACAAGAGCCAGGCTGACATGTGAGGAGAC----AATGGCAAGAACCCCCGACGCTGGAATTCGTAGTACAGTGTATAAGCTGGGGTATTTGTTCCCACTAGCATTGTATTACCATGGACCTAGTTATTTGGAGAAAACCATTTTCCCCACAGGAAAGATATATTATACCTATGATCAAAG a score=12363.0 s hg17.chr17_random 1286827 62 + 2618010 ATGGAATCCTTAGGAAATGGAATCATTTGGCAAAATTCAGTGGTCTGAAATGTTTGCATAAA s panTro1.chr19 15769520 62 - 82489036 ATGGAATCCTTAGGAAATGGAATCATTTGGCAAAATTCAGTGGTCTGAAATGTTTGCATAAA s canFam1.chr9 46561386 62 - 53642819 ATAGCATCCTTAATAAATGGAAGGATATGACAAAATTCAGATATTTGAACTTTTTGCATAAA a score=10784.0 s hg17.chr17_random 1286889 60 + 2618010 ATTCTCTTTTTTATTTTAATTGAGCCAGATAAATAAAGTATCAGGTGTTTGCTAGGGTCA s panTro1.chr19 15769582 60 - 82489036 ATTCTCTTTTTTATTTTAATTGAGCCAGATAAATAAAGTATCAGGTGTTTGCTAGGGTCA s canFam1.chr9 46561676 55 - 53642819 aTTCTCCCTTTCCTTTTAATTGAGCAATATAAA-----TATCAGGCTTTTTCCACGATCA a score=30172.0 s hg17.chr17_random 1286949 321 + 2618010 CCATTCATTGATTGGGTTGACtttttttttttccccagacacggtcttgctctgttgcccacactggagtgcagtggcgtgatctcagttcactgcaacctccacctcctgggcttacctcccatctcagcctctcaagtagctggtactacaggtgtgcgccaccacgcccagctaatttttgtatttttttgtagagatggaatttcatcatgtttcccaggctggttttgaactcctgagctcaaacgatccgcacgcctcggcctcccaaagtgctgggattacaggcatgagccaaccatgcctgcccCTTAACAC s panTro1.chr19 15769642 321 - 82489036 CCATTCATTGATTGGGTTGACttttttttttttcccagacacggtcttgctctgttgcccacactggagtgcagtggcatgatctcagttcactgcaacctccacctcctgggcttacctcccatctcagcctctcaagtagctggtactacaggtgtgcgccaccatgcccagctaatttttgtatttttttgtagagatggaatttcatcatgtttcccaggctggttttgaactcctgagctcaaacgatccgcgcgcctcggcctcccaaagtgctgggattacaggcatgagccaaccatgcctgcccCTTAACAC a score=5117.0 s hg17.chr17_random 1287270 46 + 2618010 AGTATTTGAAATTATAATACTATAATGCTTTTAACATTTGCCAGGT s panTro1.chr19 15769963 45 - 82489036 AGTA-TTGAAATTGAAATACTATAATGCTTTTAACATTTGCCAGGT s canFam1.chr9 46562439 37 - 53642819 AACATTCAGAATTATCATAC---------TTTGCAATTTGCCAGAT a score=11111.0 s hg17.chr17_random 1287316 35 + 2618010 TCCAGCATTAAAATGACAGTGAAGATGCAA--TTTTT s panTro1.chr19 15770008 37 - 82489036 TCCAGCATTAAAATGACAGTGAAGATGCAATTTTTTT s rn3.chr10 96385140 35 + 110733352 TCTAGCTTTAAAATGACAGCAAAGATGTCA--GTTTT s canFam1.chr9 46562476 35 - 53642819 TCCAGGATTAAACCTACAGTAAAGTTGACA--TTTTT a score=4515.0 s hg17.chr17_random 1287351 25 + 2618010 TTTCTACTCTTCTAGGAAATCCCAC s panTro1.chr19 15770045 25 - 82489036 TTTCTGCTCTTCTAGGAAATCCCAC s canFam1.chr9 46562511 24 - 53642819 -CTCTACTCCTCTTGGAAGCCCTAA a score=25447.0 s hg17.chr17_random 1287376 92 + 2618010 AAAAGCAACAAGGGGGATGAGAATCAGAATCACAAAGACCGCT-TCAGTGAAACT---GGGGGATATCAGAAA--CTTCAAATAAAAGGAGAAAAAGG s panTro1.chr19 15770070 92 - 82489036 AAAAGCAACAAGGGGGATGAGAATCAGAATCACAAAGACCACT-TCAGTGAAACT---GGGGGATATCAGAAA--CTTCAAATAAAAGGAGAAAAAGG s mm5.chr11 106689777 92 + 121648857 AGAAACAACAAAGGGGATGAGAATC-TAACCACAAACATTAA--CCAGAGAAACG---TGGAAACACCCGAAAACCTTCAAACCAAAGGAGAGACAGG s canFam1.chr9 46562535 97 - 53642819 AAAAGCAACAAGAAGAATGAGAAGCAGAACCACAAACAACATCATCAATGACACTAGGAGGAGACATCTGAAACTCTTCAAATGAAAAGAGGAAGGG- a score=1584.0 s hg17.chr17_random 1287468 8 + 2618010 CTACAAAA s panTro1.chr19 15770162 8 - 82489036 CTACAAAA s canFam1.chr9 46562632 8 - 53642819 CTACCGAA a score=32293.0 s hg17.chr17_random 1287476 365 + 2618010 ACAGTGAAGAggctgggcgcgggggctcaacgcctgtaatcccagcactttgggaggccgacgcgggcagattgcttgaggtcaggagttcgagaccagcctggcccacattgtgaaaccctgtttctcctaaaaatacaaaaattatccgggcatggtggcgggtgcctgtaatcccagctacttgggaggctaaggcaggagaatcgcttgaacctcggaggcggaggttgcagcgagcagattgagctactgcacttcagcttgggcgacagagcgagactccgtctcaaaacaaacaaacaaaCAaaca---aaacaacaacaacaacaacaacaaaacaCCAATCCCTACCTCTGTTGGTGAG s panTro1.chr19 15770170 364 - 82489036 ACAGTGAAGAgactgggcgcggtggctcaacgcctgtaatcccagcactttgggaggccgacgcgggcggattgcttgaggtcaggagttcgagaccagcctggcccacattgtg-aaccctgtttctcctaaaaatacaaaaattatccgggcatggtggcgggtgcctgtaatcccagctacttgggaggctaaggcaggagaatcgcttgaacctcggaggcggaggttgcagcgagcagattgagctactgcacttcagcttgggcgacagagcgagactccgtctcaaaacaaacaaacaaacaaacaaacaaacaa-aACAACAACAACAACAAAACACCAATCCCTACCTC--TTGGTGAG a score=329.0 s hg17.chr17_random 1287841 2 + 2618010 GA s panTro1.chr19 15770534 2 - 82489036 GA s mm5.chr11 106689884 2 + 121648857 GG a score=6258.0 s hg17.chr17_random 1287843 19 + 2618010 TTGGAAGGGAGAC--GCGCGT s panTro1.chr19 15770536 19 - 82489036 TTGGAAGGGAGAT--GCGCGT s mm5.chr11 106689886 21 + 121648857 CTGGAGAGGAGGCTGGCTCGT s rn3.chr10 96385621 21 + 110733352 TTGGAGAGGAGGCTGGCTCGT a score=72493.0 s hg17.chr17_random 1287862 177 + 2618010 GGCCACAGATCTTAGGGGTGACCAGCAGAGGGCGCTGCTCCAAGGTGAAGGTCGCGCCCTGAGAGGCCAT---------CCTTT--TTTGTAGTGACCAGACTGGGGTGTGCGGACAGTGCCT----CTCACAGCGACAGACCCGTGTTCTGGGTGTGGATTTTCCTCCCTTGCCTGCGGGGCTTCTGCTAG s panTro1.chr19 15770555 177 - 82489036 GGCCACAGATCTTAGGGGTGACCAGCAGAGGGCGCTGCTCCAAGGTGAAGGTCGCGCCCTGAGAGGCCAT---------CCTTT--TTTGTAGTGACCAGACTGGGGTGTGCGGACAGTGCCT----CTCACAGCGACAGACCCGTGTTCTGGGTGTGGATTTTCCTCCCTTGCCTGCGGGGCTTCTGCTAG s mm5.chr11 106689907 140 + 121648857 GGCTGCAGATCTCAGGAACGGCCAGCAGGGGGCGTGCCTCCTAGGTGAAGGTCGCACCC--------------------CCTC-------------ACAAGCTGGGGTGTGT-----GTACCT------------GGCAGACCCGTA--CTGGGTCTGGATCAATCTCCCTTGCTTGCAAGACGTGGGCTAA s rn3.chr10 96385642 164 + 110733352 GGCTGCAGATCTCAGGACCGGCCAGCAGAGGGCGCGCATCCAAGGTGAAGGTCGCACCCCCTCAAACCAA---------ACTATGCCTAGTGTAGGACGATCTGGGGTGTGT-----ATACTC------------GGCAGACCTGTA--CTGGGTCTGGATCGATCTCCTTTGCCTGCAAGGCTTGGGCTAA s canFam1.chr9 46562679 190 - 53642819 GGCCGCAGATATTAGGAAGGACCAGCAGAGGGCGCGTCTCCAAGGGAAGGGTCCAAACTCCAGAGGCAAAACAATAATCCCTTG--TTCACAATGACAAGACTGGGGTGTGTGGACAGCGCCTTGTCCTCACAGGGACAGATCCGTGTTCTGGGTATGGAGTTGCCTTCCTCGCCTGCAGGGCTTCCACTAG a score=12101.0 s hg17.chr17_random 1288039 100 + 2618010 CACTGCCGTTCCTAGACTTAGGC---AATGTTAG--Aatgagtc-----------------------------------caggaagcgaggag--------------------------aggaggtgggagtggctcctcccactgtg-----------------gcccctaagaattcacat s panTro1.chr19 15770732 100 - 82489036 CACTGCCGTTCCTAGACTTAGAC---AATGTTAG--Aatgagtc-----------------------------------caggaagcgaggag--------------------------aggaggtgggagtggctcctcccactgtg-----------------gcccctaagaattcacat s rn3.chr10 96385807 183 + 110733352 TGCTGCCGTTCATGGAACAATGCCAAGATGCTAGGAGATGAGTTGGGCTGCTCTGAAGCCACCTCAGATTCCTGGTCCACACAAAGTGTGAATTAGAAAACATTTCTGTTTAAGGCTACAGAATGTTAACGTAACTTGTTACACAGTGATAAGCAACAGAGGAAAGTCTCTAACGATTAAACC s canFam1.chr9 46562869 101 - 53642819 CACCACCGTTTCTGGACGTAGAc---attgccag-----gagtc--------------------------actggtc--cagaaaccaaggag-----------------------------agatgggagtggtccctcccactatg-----------------acccctaaaaactcactg a score=52962.0 s hg17.chr17_random 1288139 131 + 2618010 gaagaa-tttttgttttcct-tgccacgg---acccgggactgagtgggtccagaggtcctagtgccaaaggaaggaatgtgtagatcaggaaacattattgtggttttattcaactggaagccgaggctggccat s panTro1.chr19 15770832 131 - 82489036 gaagaa-tttttgttttcct-tgccaggg---acccgggactgagtgggtccagaggtcctagtgccaaaagaaggaatgtgtagatcaggaaacattattgtggttttattcaactggaagccgaggctggccat s mm5.chr11 106690428 116 + 121648857 GAAGAA-----AGTTTTCCTCTGCCACTGGAAACGCAGAACTCCGTGGGTCCTGAGGCCCTCGTGTCCAGGGGAGAAATATTAAGAACAGAAAGCA-----------CTCTTCAGTTGGAATCTGA----AGCCAT s rn3.chr10 96385994 126 + 110733352 GAAGAA-----AGTTTTCATTTGCCACTGGAAACACAGAACTCCGTGGGTCCTGAGGTCC-AGTGTCCAAGGGAGAAATATTAAGAACAGAAAACACTGTTCTGGCTAGATTCAGTTGGAATCTGA----TGCCAT s canFam1.chr9 46562970 131 - 53642819 gaagaattttttgctctcct-tgctagtg---atctgggactcagtgggtccaaaggcct-tgtgcccaagggagaaatgtctagaccgggaaacagcatcatgggtccattcatttgaaagctgagactgcccct a score=-832.0 s hg17.chr17_random 1288270 4 + 2618010 ttat s panTro1.chr19 15770963 4 - 82489036 ttat s mm5.chr11 106690544 4 + 121648857 TTCT s rn3.chr10 96386120 3 + 110733352 TAC- a score=91.0 s hg17.chr17_random 1288274 1 + 2618010 t s rn3.chr10 96386123 1 + 110733352 T a score=55761.0 s hg17.chr17_random 1288274 600 + 2618010 tttattgtttgtttgtttatttatttatttagagacagaatctcactctgtttcccaggctggaatgcaatggtgcaatcatggctcactgcagcctcaacctccgaggcttaagtgatcctcctaccttagcctcctgagtagctgggactacaggcacatgccaccatgcc---ttttttttttagacggagtcttgctctgtcacccaggctggagtacagtggtatgatcatggctcactgcaacctctgcctccgggttcaagcgattctcctgcctcagcctccggagtagctgggattacaggcacgcttcactacacccagctaatttttgtatttttagtagagacagggtttcaccgtgtccgccaggctgttctcatgatcctgacctcaggtgatccgcccaccttggcgtctcaaagtgcggggattacaggtgtgagccatcatgcccagccctgtccagctaatttttaaactatgggcaagtatgttgcccaaggctgctttggaacttctgggctcaactgattgtctttcctcggcctcccaatgtgcttggattagaagcatgagccaccttgcccagctgagg s panTro1.chr19 15770967 603 - 82489036 tttattgtttgtttgtttatttatttatttagagacagaatctcactctgtttcccaggctggaatgcaatggtgcaatcatggctcactgcagcctcaacctccgaggcttaagtgatcctcctaccttagcctcctgagtagctgggactacaggcacatgccaccatgcctttttttttttttagacagagtcttgctctgtcacccaggctggagtacagtggtatgatcatggctcactgcaacctctgcctccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcacgctccactacacccagctaatttttgtatttttagtagagacagggtttcaccgtgtcagccaggctgttcttatgatcctgacctcaggtgatccgcccaccttggcgtctcaaagtgcggggattacaggtgtgagccatcgtgcccagccctgtccagctaatttttaaactatgggcaagtatgttgcccaaggctgctttggaacttctgggctcaactgattgtctttcctcggcctcccaatgtgcttggattagaagcatgagccaccttgcccagccgagg a score=600.0 s hg17.chr17_random 1288874 1 + 2618010 c s panTro1.chr19 15771570 1 - 82489036 c s mm5.chr11 106690548 1 + 121648857 C s rn3.chr10 96386124 1 + 110733352 C a score=22740.0 s hg17.chr17_random 1288875 55 + 2618010 tgtccatttaaagttcctcatgctgctgaatcaataaggagagaaggcggccact s panTro1.chr19 15771571 55 - 82489036 tgtccatttaaagttcctcatgctgctgaatcaataaggagagaaggcggccact s mm5.chr11 106690549 54 + 121648857 TGGTCATTCAGAGTTGCTACTGTTGCTAAGGCAAC-AGCAAAGAAGGGGAACACT s rn3.chr10 96386125 55 + 110733352 TGGTCATTCAGCGTTGCTGTTGTTGCTAAGCCAACAGGCAAAGAAGGGGAACACT s canFam1.chr9 46563101 45 - 53642819 tggccatttgggattcctcctgctgctga----------aaacaAAGGAGTCACt a score=6683.0 s hg17.chr17_random 1288930 42 + 2618010 attatgggctaagtgtttgcatccctcccaaattcttacgtt s panTro1.chr19 15771626 42 - 82489036 attatgggctaagtgtttgcatccctcccaaattcttaagtt s canFam1.chr9 46563146 42 - 53642819 gttataggctgaatgtttctgtcaccccaaaatctatatagt a score=9455.0 s hg17.chr17_random 1288972 34 + 2618010 gaagccctaa-ccccagcgtgatggtattagaagg s panTro1.chr19 15771668 34 - 82489036 gaagccctaa-ccccggcgtgatggtattagaagg s rn3.chr10 96386342 35 + 110733352 GAAGCGCTAATTTTCAAGGTGACGGTGTTAGGAGG s canFam1.chr9 46563188 35 - 53642819 gatgtcctgacccacaatgttatggctttaggagg a score=612.0 s hg17.chr17_random 1289006 9 + 2618010 tggggcctg s panTro1.chr19 15771702 9 - 82489036 tggggcctg s rn3.chr10 96386377 9 + 110733352 GAGAGACCT a score=27650.0 s hg17.chr17_random 1289015 304 + 2618010 gccaggcacagtggttcacgcctttaatcccagcactttgggaggccgaggtgggtggatcatgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagttagccgggtgtggtgacgtgtacctgtaatcccagctacttgggagccagaggcaggagaatcgcttgaacccaggagggggaggttgcagtgagccaagactgcaccactacactccagcctggcaacagagcaacactccatctcaaaaaaaaaaaa-------------aagaagaagaaggt s panTro1.chr19 15771711 317 - 82489036 gccaggcacagtggttcacgcctttaatcccagtactttgggaggccaaggtgggtggatcatgaggtcaggagttcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatacaaaagctagctgggtgtggtgacgtgtacctgtaatcccagctacttgggagccagaggcaggagaattgcttgaacccaggagggggaggttgcagtgagccaagactgcaccactacactccagcctggcaacagagcaacactccatctcaaaaaaaaaaaaaaagaagaagaagaagaagaagaaggt a score=12035.0 s hg17.chr17_random 1289319 74 + 2618010 ggggcctttgggaagtaattaagcttagaggagatcatgcagacagtgctccacgatgggatgagtgtctttat s panTro1.chr19 15772028 74 - 82489036 ggggcctttgggaagtaattaagcttagaggagatcatgcagacagtgctccacgatgggatgagtgtctttat s canFam1.chr9 46563223 57 - 53642819 ggggcctttgggaagcaattaggtttagatggggtcatga-----------------gggtggagtcTCTCTCT a score=31496.0 s hg17.chr17_random 1289393 346 + 2618010 aagaagagaccagatgactgggcacagtggctcatgcctgtaatctcagtacattgggaggccaaggcaggtgaatcacttgaagacagacgtttgagaccagccggggctacatggtgaaacaccgtctctactaaaaatacaaaaattagctgggcgtggtggcacacatctctaatcccagctatttgggaaggtgaggcaggagaatggcttgaacccagcagatagaggttgcagtgagcccagatcaagccattgcactccagcctccagcctggacaggcagagcatctgagattctccatctcaaaaaaaaaaaaaaaaaaaaagaagatgctagaga s panTro1.chr19 15772102 344 - 82489036 aagaagagaccagatgactgggcacagtggctcatgcctgtaatctcagtacattgggaggccaaggcgggtgaatcacttgaagacagacgtttgagaccagctggggctacatggtgaaacaccgtctctactaaaaatacaaaaattagctgggcatggtggcacacatctctaatcccagctatttgggaaggtgaggcaggagaatggcttgaacccagcagatagaggttgcagtgagcccagatcaagccattgcactccagcctccagccttgacaggcagagcatctgagattctccatctc--aaaaaaaaaaaaagaagaagaagatgctagaga a score=57305.0 s hg17.chr17_random 1289739 418 + 2618010 gcctttct-tctctttgtccaccaagtgaggcaagaaggcagccgtcttcaagctaggaaaagagccctcaccagca-cccaatcatgctatctacctgatattggacttcctagccac-------cagaactgtgagaaatcattatctgttgtttaagccacccagtatgtggtattttgtaatagcagcctgagctgactaaaaccatcactgaattagcctctgtatatatgattagcaagaggaaaatggctctgttacttaaaagaggaaggagactatgtctggaaaccaaaaattcactggggacacatcttagcaggctcttgaccctaagacctggttaatggaaaagtagagcaacccagtaaaaacaagaccaccaagaagtcaggtcttatgggaataaagtattgggtgtccc s panTro1.chr19 15772446 418 - 82489036 gcctttct-tctctttgtccaccaagtgaggcaagaaggcagccgtcttcaaactaggaaaagagccctcaccagca-cccaatcatgctatcaacctgatattggacttcctagccac-------cagaactgtgagaaatcattatctgttgtttaagccacccagtatgtggtattttgtaatagcagcctgagctgactaaaaccatcactgaattagcctctgtatatatgattagcaagaggaaaatggctctgttacttaaaagaggaaggaggctatgtctggaaaccaaaaattcactggggacacatcttagcaggctcttgaccctaagacctggttaatggaaaagtagagcaacccagtaaaaacaagaccaccaagaagtcaggtcttatgggaataaagtattgggtgtccc s canFam1.chr9 46563280 313 - 53642819 TCCTCTCTCTCTCTCTGTCTCACggatacagcaggagggt-----tctgcaaaccaggaagaaaactttcatcagaaccccaaccattctggcaccctgatctcagacattc-agcctcagaactgcagaaccatgaaaaataaatgtctcgtgtttcagccat-------------------------------------------------------------------------------------------cTCTGCT----------------AGACAatgtctagaacccaaggatttagcaggggcaaatcttaatatgcccttctcccaaaaacctggttaatgg-aaagtacagcaacctgataaagacaagactgccaagaactcaggtcctacaggaagaaagttttgggtccccc a score=1528.0 s hg17.chr17_random 1290157 16 + 2618010 tgtgaggcaTCCTTCA s panTro1.chr19 15772864 16 - 82489036 tgtgaggcaTCCTTCA a score=7348.0 s hg17.chr17_random 1290173 37 + 2618010 AAAGGGGACTGGAAGAAGTGGTGGAAGAAGGCAGCTA s panTro1.chr19 15772880 37 - 82489036 AAAGGGGACTGGAAGAAGTGGTGGAAGAAGGCAGCTA s canFam1.chr9 46563850 37 - 53642819 AAGGGGTATATGAATAAGTAATAGAAGAAGGCAACTA a score=31693.0 s hg17.chr17_random 1290210 343 + 2618010 TGATTATTggctgggtgtggtggtttacgcctgtaatcccagcactttgggagggtgaggcgagtggatcacctgaggttaggagttcgagaccagcctgactaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggcatggtggtgcatgcttatagtcccagttactctggaggctgaggcagcagaatcgctcaaacctgggaggtggaggttgcagtgagccgagatcacgccactgcaccccagcctgagcgacagagcaagactctgtctcaaaaaagg---aaaaaaaaaaaaaaaagaaaGCAGATATAATTATCGACTTAGACT s panTro1.chr19 15772917 346 - 82489036 TGATTATCggctgggtgtggtggtttacgcctgtaatcccagcactttgggagggtgaggcgagtggatcacctgaggttaggagttcgagaccagcctgactaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaagcatggtggtgcatgcttatagtcccagttactctggaggctaaggcagcagaatcgctcaaacctgggaggtggaggttgcagtgagccgagatcacgccactgcaccccagcctgagcaacagagcaagactctgtctcaaaaaaggaaaaaaaaaaaaaaaaaaagaaAGCAGATATAATTATCGACTTAGACT a score=12136.0 s hg17.chr17_random 1290553 83 + 2618010 TCATGGCCATTTGTAGAAGGAGGCTTCTAACAGCTATGTTTTATGTTAATTGGCTCTTTTCTTTTTTCCTTCAACCTTCTTCT s panTro1.chr19 15773263 75 - 82489036 TCATGGCCATTTGTAGAAGGAGGCTTCTAACAGCTATGTTTTATGTTAATTGGCTCttttcttttttccttcaac-------- s canFam1.chr9 46563887 68 - 53642819 TTATGGCCACTTGTAG-AGGAGACTTCAGACAG-TATGCTTTATGTTCATTTGCTCTTTTTCCTTCTTTT------------- a score=28966.0 s hg17.chr17_random 1290636 312 + 2618010 TCTTATTATTATTATTAt--ttttttttttctgagacaagagtttcgctctgtcgcccaggctggagtgcagtggcgccatctcggctcactgcaagccctgcctcccgggttcacgtcattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccaagcctggctaattttttgtatttttagtagagacggggtttcatcgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggcc s panTro1.chr19 15773338 313 - 82489036 -cttattattattattattattttttttttctgagacaagagtttcgctctgtcgcccaggctggagtgcagtggcgccatctcggctcactgcaagctctgcctcccgggttcacgtcattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccaagcccagctaattttttgtatttttagtagagacggggtttcatcgtgttagccaggatggtctcgatctcctgacctcgtgatctgcccgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggcc a score=33652.0 s hg17.chr17_random 1290948 179 + 2618010 TCTTTCAACCTTATATTAagagcactggcagaagctatcagttttggtatcatgtaattactagctgtataaccttggccaaattactcaaccttactgtgccccagttactcatctgtaaaac-agggtaatagaagtctcaagcttgtaattatgttgttataaagatttaatactag s panTro1.chr19 15773651 179 - 82489036 TCTTTCAACCTTATATTAagagcactggcagaagctatcggtttttgtatcatgtaattactagctgtataaccttggccaaattactcaaccttactgtgccccagttactcatctgtaaaac-agggtaatagaagtctcaagcttgtaattatgttgttataaagatttaatACTAg s canFam1.chr9 46563956 175 - 53642819 TCTTTCTGCCTTATATAAAGAGCACCAGTAGTAGCTAATGATTTTGGTATCACTTGAttactagctgtataaccttgagcaagctgcttagcctttacatgccttagttattcatctgtaaaactagggtaataaaagta-agagctc----ctaggttgatgtaaagatgtaatgctta a score=96038.0 s hg17.chr17_random 1291127 1046 + 2618010 gccaggtatggtggatcacgcctgtaatcccagcactttaggagcccgaggccggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtaaaaccctgtctttactaaaaatacaaaaaattagccaggtgtggtggcatgcgcttataatcccagttactcaggaggctgaggcaggagaatcacttgaaactgggaggtggaggatgcagtgagctgagattgtgccactgcactccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaaaaGACTTAACACTTTGAACAAAAGAAAAACATGataataaaaataaaatttaaaaaaGCCTTTAACACTTGggccaggcatggtagctcatgcctgtaatgccagcattttgggaggctgaagagggaggattacttgagcccaggaattccagaccagcctgggcaacatagcaagactttgtttctacttt--aaaaaaaaaaaaaaagtcaggtgtggtggtacacacttgtgatcccagctatttgggaggctgagatgggaggatcccatgagcctgggaggttgaggctgcaataagccatgatcataccactgcactccagcctgggcgacacagtgagacccatctcaaaaaaaaaaCTATTcccaacacttagcagcttaaaacaaaaaatatttattattattattatttgagatgaagtctcgctcttgtcccccaggttggagtgcaaatggtgcaatctcggctcactgcaacctccacctcccaggttcaagtgattcttctgcctcagcctcccgagtagctgggattacaggcacctgccaccacg-------aatttttgtatttttagtagagatggggtttcaccatgttggccaggctggtcttcaacccttgacctcaggcgatctgcccgccttggcttcccaaagtgctgggattacaggcatgagccatcacgcccggccaaaaaccatttattatatcacactttctgtgggccaggaatctgggagggacttagc s panTro1.chr19 15773830 1055 - 82489036 gccaggtatggtggatcacgcctgtaatcccagcactttaggagcccgaggccggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtaaaaccctgtctttactaaaaatacaaaaaattagccaggtgtggtggcatgggattgtaatcccagttactcaggaggctgaggcaggagaatcacttgaaactgggaggtggaggatgcagtgagctgagattgtgccactgcactccagcctgggcaacagagcgagactccatctcaaaaaaaaaaaaaaGACTTAACACTTTGAACAAAAGAAAAACATGATAATAAAAATAAGATTAAAAAAAGCCTTTAACACTTGggccaggcatggtggctcatgcctgtaatgccagcactttgggaggctgaagagggaggattacttgagcccaggaattccagaccagcctgggcaacatagcaagactttgtttctcctttaaaaaaaaaaaaaaaaagtcaggtgtggtggtacacacttgtgatcccagctatttgggaggctgagatgggaggatcccatgagcctgggaggttgaggctgcaataagccatgatcataccactgcactccagcctgggcgacacagtgagacccatctcaaaaaaaaaaTTATTcccaacacttagcagcttaaaacaaaaaatatttattattattattatttgagatgaagtctcactcttgtcccccaggctggagtgcaaatggtgcaatcttggctcactgcaacctccacctcccaggttcaagtgattcttctgcctcagcctcccaagtagctgggattacaggcacctgccaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgctgtccaggctggtcttcaacccttgacctcaggcgatctgcccgccttggcttcccaaagtgctgggattacaggcaggagccatcacgcccggccaaaaaccatttattatatcacactttctgtgggccaggaatctgggagggacttagc a score=42289.0 s hg17.chr17_random 1292173 244 + 2618010 tggatggttctgctcaggtctctcgggatgtttcagtcaagcagtggcctggagctgcactcttatctgaagactcaactggcagaaaatatgcatgcaaggtcgc-tcattggttgttggcaggctgcagtttcttactgaatgttggctgaagacatcactgg----------------cttgctacatggacatctccatagactgcttgaatgtcctccccacatag-------------ccagagtgaatgagctaaaagagagacagc s panTro1.chr19 15774885 244 - 82489036 tgggtggttctgctcaggtctctcgggatgtttcagtcaagcagtggcctggagctgcactcttatctgaagactcaactggcaggaaatatgtatgcaaggtcac-tcattggttgttggcaggctgcagtttcttactgaatgttggctgaagacatcactgg----------------cttgctacatggacgtctccatagactgcttgaatgtcctccccacatag-------------ccagagtgaatgagctaaaagagagacagc s canFam1.chr9 46565214 269 - 53642819 tgggtgattctgcttgggtctcttaaaa-gtttcagtcaaattgggg-ttggagctgcagtctcatttgaagactcaagtgggaag-agtctgctttcaagctcacttctttggctcttggcaagccgcagtttcttactggctattgg-tgaagccaatattggaactggctatcagttccttgtcacatgagcctct-catagcttgcctgagtgtcctcccaacttagcagctggctttccccagagtaaatgatctagaagaaagagaga a score=51109.0 s hg17.chr17_random 1292417 583 + 2618010 aagaacacacacaccccagataagagttcagtctttctaagtcatatgaaaaagatacttggacatgcatgtttatagcagcacaattcacaattgcaaaaatgtggaaccagcccaaatgcccatcaatcaatgagtggataaagaaaccgtggtgtgtgtgtgtgtgtgtatatatatatatatatatatatataatatatatatatatgcatacaatggaatactattcagccataaaaagaaatgaattaatggcatttgcagcaacctggatgggattggagacttatcattccaagtgaagtaagtcaggaatggaaaaccaaacatcctacgttctcactcataagtgggagctaagctatgaggatgcaaaggcataagaatgacacaatggaatttggggactcagagggaaagtgtgggaaggggttgacagataaaaggctattaattaggtgcagtgtatactgctcgggtgatgggtgcaccacaatttcacaaatcaccactaaagaactgactcatgtaaccaaacaccaactgttcttcaataacctatggaaataaaaaatt--aaaa s panTro1.chr19 15775129 566 - 82489036 aagaacacacacaccccagataagagttcagtctttctaagtcatatgaaaaagatacttggacatgcatgtttatagcagcacaattcacaattgcaaaaatgtggaaccagcccaaatgcccatcaatcaatgagtggataaagaaaccgtggtgtgtgtgtgtgtgtatatatatatatatatatatata-------------------cacacaatggaatattattcagccataaaaagaaatgaattaatggcatttgcagcaacctggatgggattggagtcttatcattccaagtgaagtaagtcaggaatggaaaaccaaacatcctacgttctcactcataagtgggagctaagctatgaggatgcaaaggcataagaatgacacaatggaatttggggactcagagggaaagtgtgggaaggggttgacagataaaaggctattaattaggtgcagtgtatactgctcgggtgatgggtgcaccacaatttcacaaatcaccactaaagaactgactcatgtaaccaaacaccagctgttcttcaataacctatggaaataaaaaattaaaaaa a score=27530.0 s hg17.chr17_random 1293000 149 + 2618010 aaaaaaagagttcagtctttctgtaatctaatcttggaagtgtatattatcctatc---------ctatcagtcttccagaccaaccctgctacagggtaggtggggactatatgggatgtgaataccaaaaagtgggca-cactgggggctggctact s panTro1.chr19 15775695 149 - 82489036 aaaaaaagagttcagtctttctgtaatctaatcttggaagtgtatattatcctatc---------ctatcagtcttccagaccaaccctgctacagggtaggtggggactatatgggatgtgaataccaaaaagtgggca-cactgggggctggctact s canFam1.chr9 46565493 159 - 53642819 gagataagagttcagacgttttgtaacctactcttgaaagtgcgtattatcacttcttccacatgctatgggtgactcagaccagtcttgctacaatgtgagaggggaccacacagggtgtgaataccaggaagtggggatcattaggggccagccatt a score=41929.0 s hg17.chr17_random 1293149 487 + 2618010 tggaggatggttactacaAACTATATTTGTAAttttttttttctcgagatggagtcttgctctgtcgcccaggctggagtgcaatggcatgatctcggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctccctaatagctgggattacgggcgtgcaccaccacacccagctaatttttt-gtatttttagtagagataaggtttcaccatgttgaccaggcctga-cctcgctcatgatccgcccgccctggcctcccaaagtgctggaattacaggcatgagccaccacgcccgactATATTTGTAATTTTTTAACCACTGGAAAAAAAAAAAAGAAAGAAACAAGTATGGGAAAATACTAAGATCTGATAAAACTGGGTTATATTTGTGCAGCTGTTGATTACACTATTCTCTATAACTTTGAATGttttataataaaaataaaaatattttCTCCTTAAAAATGT s panTro1.chr19 15775844 484 - 82489036 tggaggatggttactacaAACTATATTTGTAAttttttttttctcgagatggagtcttgctctgtcgcccaggctggagtgcaatggcatgatctcggctcactgcgacctccacctcctgggttcaagtgattctcctgcctcagcctctctaatagcggggattacgggcgcgcaccaccacacccagttaattttttggta-ttttagtaaagataaggtttcaccatgttgaccaggcctgaccctcgctcatgatcc-ctcgccctggcctcccaaagtgctgggattacaggcctgagccaccacgcccgactATATTTGTAATTTTTTAACCACTGGAAAAAAAAAA---AAAGAAACAAGTATGGGAAAATACTAAGATCTGATAAAACTGGGTTATATTTGTGCAGCTGTTGATTACACTATTCTCTATAACTTTGAATGttttataataaaaataaaaatattttatCCTTAAAAATGT a score=8434.0 s hg17.chr17_random 1293636 49 + 2618010 GCAGAGCATACCTCACATAATGTTGACAAATAATCCTAGAGACAATTAt s panTro1.chr19 15776328 48 - 82489036 GCAGAGCATACCTCACATAATGTTGACAAATAATCCTAGAGACAATTA- s canFam1.chr9 46565906 49 - 53642819 GAAGAGGACACCTCAAATAATGATGACAGAGACTTCTGAAGACAATTTC a score=67865.0 s hg17.chr17_random 1293685 749 + 2618010 ttttttttttttttgagacagggtctcactctgttgccctggctggagtgcagtggcaccatctcagctcactgcaacctctgtctcccaagttcaagcaattctcctgcctcagcctcctgagcagctgggactacaggcgagcaccatgatgtccggctaatttttgtattttcagtagagacagagtttcatcatgttgcccagctggtctcaaactcctggccgcaagcgatccacccaccttggcctcccaaagtgctaggattacaggcgtgagccactgtgccgggccAAatacatacatacatatatatatatatatatatatata-----------------------tttttttttttttttgagacagcgtcttgctctgttgcccaggctggagtgcagtagtgcaatttcggctcactgcagcctctgcctcgtgggctcaagtgattttcatgcctcagcacccggagtagctaggactacaggtgcccatcatcaggcccggctgattcttgtattttgagtagagacggatttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctctcaaagtgctgggattaccggtgtgagccactgtacctggccAAGACAATTTTAAGAAACAGGCACTCTCggctgggcgcggtggctcacgcctgtaatcctatcactttaggaggctgaggagggcggatcacaaggtcaagagatcaagaccattttgg s panTro1.chr19 15776376 771 - 82489036 -tttttttttttttgagacagggtctcactctgttgccctggctggagtgcagtggcaccatctcagctcactgcaacctctgtctcccaagttcaagcaattctcctgcctcagcctcctgagcagctgggactacaggcgagcaccatgatgtccggctaatttttgtattttcagtagagacagagtttcatcatgttgcccagctggtctcaaactcctggccgcaagcgatccacccaccttggcctccctaagtgctaggattacaggcgtgagccacagtgccgggccAAatacatacatacatacatacatatatatatatatatatatattttttttttttttttttttttttttttttttttgagacagagtcttgctctgttgcccaggctggagtgcagtagtgcaatttcggctcactgcagcctctgcctcgtgggctcaagtgattttcatgcctcagcacccagagtagctaggactacaggtgcccaccatcaggcccggctgatttttgtattttgagtagagacggatttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctctcaaagtgctgggattaccggtgtgagccactgtacctggccAAAACAATTTTAAGAAACAGGCACTCTCGgctgggcgcgggggctcacccctgtaatcccatcactttaggaggctgaggagggcggatcacaagggcaagagatctagaccgttttgg a score=13067.0 s hg17.chr17_random 1294498 156 + 2618010 cttgtaatcctagctacttgggcagctaacgcaagagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcacgccattgcactccagcctgggtgacagagtgagactccgtctcaaaaaaaaacaaaaacaaaa--caaggagaaa s panTro1.chr19 15777258 158 - 82489036 cttgtagtcctagctactggggcagctaacgcaagagaatcgtttgaacccaggaggcagaggttgcagtgagccgagatcatgccattgcactccagcctgggtgacagagtgaggctccttctcaaaaaaaaaaaaaaaaaaaaaaCAAGGAGAAA a score=18469.0 s hg17.chr17_random 1294654 100 + 2618010 TAGTCCTTGTAAAGAAGGAAATTATAAGAAGGCAATAGACTGAAATGAACAAACAACAGGATGAACAAAAAAGGAAGCTGACTATT---AATTCCTGAGCTTT s panTro1.chr19 15777416 100 - 82489036 TAGTCCTTGTAAAGAAGGAAATTATAAGAAGGCAATAGACTGAAATGAACAAACAACAGGATGAACAAAAAAGGAAGCTGACTATT---AATTCCTGAGCTTT s canFam1.chr9 46565995 97 - 53642819 TGATCCTTAT-AATCAGGAAATTATAAAAAG--AGTAGACTGAGATGAAAGAACAATAGGATGAACCAAAA---AAGCTAACTAATAAGAATTCCTTAGCTTT a score=17103.0 s hg17.chr17_random 1294754 193 + 2618010 CAACCCCTTACTGGggccaggtgcagtggcttactcccttaatccctgggctttgggaggcccagatgggcagatagcttgagcccaggagtttgagaccagcctgggcaacagggtgaaatcccatctctattaataaagaaaaaaaaaaaAAAAAAGCGGGGGCGGAGGGAGGGGAGGGGAGAAAGGAAAG s panTro1.chr19 15777516 186 - 82489036 CAACCCCTTACTGGggccaggtgcagtggcttactcccttaatccctgggctttgggaggcccagatgggcagatagcttgagcccaggagtttgagaccagcctgggcaacagggtgaaatcccatctctattaataaagaaaaaaaaaa-------GCAGGGGCGGAGGGAGGGGAGGGGAGAAAGGAAAG a score=18139.0 s hg17.chr17_random 1294947 104 + 2618010 AAGATCCTTATTGGAAAGAGCAAAAGGCAGAACTGATGCTCCTGAAAATGAAATCAGCAACA-AATGTACAAATTCCGGAATGTCTCCTAGAATAACGAGGAAAA- s panTro1.chr19 15777702 104 - 82489036 AAGATCCTTATTGGAAAGAGCAAAAGGCAGAACTGATGCTCCTGAAAATGAAATCAGCAACA-AATGTACAAATTCCGGAATGTCTCCTAGAATAACGAGGAAAA- s canFam1.chr9 46566092 105 - 53642819 AAAATCC-TGTTGGAAGGAGCCAAGAGCAGAGTACATAGTACTGAACATGAAATCAGTGACATGATGTGCAGAGTCAAGAAAGCCTCCTAGAATGAAAAGGAAAAA a score=32415.0 s hg17.chr17_random 1295051 351 + 2618010 ccgagtgtggtaggttatgcctataatcccagcactttgggaggccaaggaggttggatagcttgagcccaggagttggagaacagcctggccaacatgatgaaaccccatctctacaaaaaatacaaaaattagctgggtgtggtggtgcgtgcctgtagtcccagctactctggaggcgaaggtaggagaatcacctgagccccgggaggtcaaggccacagtgagccttgatcgagttttgccactgtactccagcctaagcaacagtgagaccctgtctcaaaaaataaataaataaataaataaataaataaataaataaa----caagcaaataaataaTAGTAGAGAT s panTro1.chr19 15777806 355 - 82489036 ccgagtgtggtaggttatgcctataatcccagcactttgggaggccaaggaggttggatagcttgagcccaggagttggagaccagcctggccaacatgatgaaaccccatctctacaaaaaatacaaaaattagctgggtgtggtggtgcgtgcctgtagtcccagctactctggaggcgaaggtaggagaatcacctgagccccgggaggtcaaggccacagtgagccttgatcgagttttgccactgtactccagcctaagcaacagtgagaccctgtctcaataaataaataaataaataaataaataaataaataaataaataaacaagcaaataaataaTAGTAGAGAT a score=10743.0 s hg17.chr17_random 1295402 116 + 2618010 AGAAGATAAAAT-----------------GGAAGGCCG-----------------------------------AAAGT------------------------------------------------------------AGAATATCAACACTGATAACATAACAAGGAAATATGAATATTTGTCAGATTCCTAAGGCAAAAACAACAGCCCAGGAGTGTGGATAAAAA s panTro1.chr19 15778161 116 - 82489036 AGAAGATAAAAT-----------------GGAAGGCCG-----------------------------------AAAGT------------------------------------------------------------AGAATATCAACACTGATAACATAACAAGAAAACAGGAATATTTGTCAGATTCCTAAGGCAAAAACAACAGCCCAGGAGTGCGGATAAAAA s canFam1.chr9 46566758 225 - 53642819 AGAAGATAAAATATATAGAAGACATAATCAGAAGATCATGATTAAGGGGTGCCTgcctggctggctcagtggcaaagcatatgactcttgatcttaatgttgtgagttccagccccaccttgggtgtagatcttacAAAGAAGACCAATATTAAGGAAGACACAAAAGAATAGGAGTATCTGAAAGATTCTTAAGGTGAA---AATGGTGTAGGTGCACAGATAAAAA a score=28366.0 s hg17.chr17_random 1295518 323 + 2618010 TAACCCTATATAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgagggggggcggatcaggaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctactataaaaaaaatacaaaaaaattagccaggcgtggtggcaggcgcctgtagtcccagctacgcgggaggctgaggcaggagaatggcgtgaacccaagaggcagagctggcagtgagccgagatcgtgccaccgcactccagcctgggggacagagcgagactccatctcaaaaaaaaaaaaaaaaaaaaaaa s panTro1.chr19 15778277 317 - 82489036 TAACTCTATATAggccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgagggggg-cggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccctgtctctactattaaaaaaatacaaaaaaattagccgggcgtggtggcaggtgcctgtagtcccagctacgcgggaggctgaggcaggagaatggcgtgaacccaagaggcagagctggcagtgagccgagatcgtgccactgcactccagcctgggggacagagcgagactccatctcaaaaaaaaaaaaaaaaaa----- a score=7930.0 s hg17.chr17_random 1295841 49 + 2618010 TAGCTCTATATAATCGGTGTAAAATCAAATTTTTAGTTACTTGAAAGTA s panTro1.chr19 15778594 49 - 82489036 TAGCTCTATATAATCGGTGTAAAATCAAATTTTTAGTTACTTGAAAGTG s canFam1.chr9 46566983 49 - 53642819 CAGCTGAATGCGCTTGAAGCAAAATCGAGTGTTTAGCCTCTTAAAAGTG a score=18096.0 s hg17.chr17_random 1295890 98 + 2618010 AAATATTTGAAATGCTCTCTAAAAATGAGG-AATATTAATAAAACAAAGATGATGGCTATGATTAGTATTATTAACAAAGCTTAGAAAGCTTTTATTAA s panTro1.chr19 15778643 98 - 82489036 AAATATTTGAAATGCTCTCTAAAAATGAGG-AATATTAATAAAACAAAGATGATGGCTATGATTAGTATTATTAACAAAGCTTAGAAAGCTTTTATTAA s canFam1.chr9 46567189 94 - 53642819 AAATATTTGAGGTATTCTCTATACATTAGGAAATATCAACAAAACAAACGTGATGACTGTGATTAT-----TCAACAAAGTTTGGAAGGTTCTCATCAA a score=52053.0 s hg17.chr17_random 1295988 552 + 2618010 ggccgggcgcagtggctcacacctgtaatcccaacactttgggaggccggggcaggcggatcacgaggtcaggagattgagaacatcctggctaacacagtaaaaccccgtcgctactaaaaatacaaaaaaattagccaggcgtggtggcgggcacctgtagtcctagctactcaggaggctgaggcgggagaatggcgtgaacccgggaggtggagcttgcagtgagctgagatcgtgccactgcactccagcctgggcaacagagcaaaactctgtctaaaagaaaaaaaaagaaaagaaaaaagaaaCCTCTTATTAATGCATggctgggcgtggtggctcacacctgtgatcccagcactttgggagaccgaggcaggcggatcacctaaggttgggagttcaagaccaggctgaccaacatggagaaaccccatctctactaaaaatacaaaattagctgggtgtggtggatgtctgcagtcccagctactacggaggctgaggcaggagaattgctggaacctgggaggtggaggttgtggtaag s panTro1.chr19 15778741 552 - 82489036 ggccgggcgcagtggctcacagctgtaatcccaacactttgggaggccggggcgggcggatcacgaggtcaggagattgagaacatcctggctaacacagtaaaaccccgtcgctactaaaaatacaaaaaaattagccaggcgtggtggcgggcacctgtagtcctagctactcaggaggctgaggcgggagaatggcgtgaacctgggaggtggagcttgcagtgagctgagatcgtgccactgcactccagcctgggcaacagagcaaaactctgtctaaaagaaaaaaaaagaaaagaaaaaagaaaCCTCTTATTAATGCATggctgggcgtggtggctcacacctgtgatcccagcactttgggagaccgaggcaggcggatcacctaaggttgggagttcaagaccaggctgaccaacatggagaaaccccatctctactaaaaatacaaaattagctgggcgtggtggatgtctgcagtcccagctactagggaggctgaggcaggagaattgctggaacctgggaggtggaggttgtggtaag a score=279349.0 s hg17.chr17_random 1415732 3124 + 2618010 cacaggatgtgtctatcttaagatttagat---aaatatttaaatttttttctaatgaggttgtaccacactctccaaccagcagagtatgggagaccttaatgaggtctacatctatttagttttagccaatacgataagtacagggtcgggtagcattgtagttttaatttgtaatttctcaatcagtaatagttaagacttttttatgtttattagccatttggagttaatatttatgaattatgaattctaaaccattcgttggtcatttttttcaattgggttatttgttgtctttttcttattgactttatttcttttgtgtctttttagcactagaccttggtggttatatgtattgaatatattttctcccacttgatgatttgtatttttgttcattttccagtgtcttttaatgaagacaaattcttaatttcaatgtagtcaatttataacttttaagttatatgtgtttatttaaaaatatttctctaaatatatcatgaagatattcttatatattaccatttaaaaaccgtatttccttgctatcacatttaatttttaatacttctagaaattacttttataagacttgagtaagggggaaaatcatgttttcatagaagaatacacagttgttttgccattactttaagagaatattgtatccAGATGGTTCTACAGTGGAACATATCTTACAATAAAATGGttataaaattaattatttttataaGACACTTCAATGTttctgaacttctttgtttctgatgaacagtgggcaattaatcataacattcttccctgtatgtgatgtttcctttctcactggttcattttaagattttctttttctttgacttttagcattttgtctataatgtggttaacatttttgttgtgtttagtttgaagctccttggatctctaagtcaatattttccacaaaatttgacaagttttcagttattatttcttcaaatattttgtttctctttctgtttctctttctggcactacaactata-gacatgaacttcttggcaaggtatgtcagtatatttatgtactgtttgtctttctgttacttagattgatctgttttcatggtaactggttattttttctgtcatcttcagtccttcattgagtctttcttttaatttattggacattttagctctaaaattccatcttttgtcctttccttatcctatcagaattccgttctccgttcactcattactgccatttttctttaaactttggacatatccactcattctttgaatattgcttaataagcttctgtgaaatccttcttgctaaatccaaaatttgacattaccttgaattttttattcagtatctttttctttattgtaagttatcactttcctgtttctttacatTCATGAAAAATTATAAATAACACACTGTAGGATATAGGGATTCTTAGAATTACTATCTTATttttgtctgctaaatagtaaccttgtttggacttgaaatgctagctttattttccaagcattaggcatcagctaaagtgtctgctcaatttttgtgccttcaagatgctgtttttaggctggactcttagagatctctgagaaacgggttcacttggactggtcaccgacttgtctgagtccagtaagacagaacacccatgcatccataagtaatatgaaacgtttttattacatgaaaataggtgggaagaaaaaacacaagtctagaattcatgtgaaccagtccgccaaggctcagaaaagctgccaggaatggatggaatcttatttgcatgtctgccacctgcactgcagctgaggaagcctggtaaacaggctgagctcggttttatacccctgggttgtcagaatttttcggataaagtggggaaggacatcctgttttcaggagagggagggtggacaggttgaaacagagtccaggctttccagccagtccctccttattttaggatattacattcccaacatattttatagttattcatgagagctacaagtaaaaatggggggg-aaactgggttagttcaaggccacctggagaattgtcccccagtatccacggtctctgcttaatttgtctctcaacataaaagagacagagattaccagttgaccctccttatctgtggggttttgcatcatggattcaaccaaccacatatcaaaaacatcaaaaaaatgcatttgtattgaatatatactgactttttttgtccttattccctaaacaatacagcagatcagctatttacacagcatttatatcttattaggtattataagagaactacagattagttaaagtctgcaagagaatgtgtagaggttatatgtaaatattgcaccattttatattagggacttaagcatccatgggttttggtatccacaggggtcctggaaacaactcccacagatacagagaaatgactgtactcaaaattagaggcaaaatcttcctggcatttccttgtttctggggatttctactaatttacagctgctccatagatttgttttctttcctttgaatctccaagtcattaagcttcagctttttgctgTCCAAGTTGAATATGGTTGAGGAATGCCATCAATTAATTCAATTAATAAGAAAACAAGTACATGGAACTCACCTGGAAGAGCTTTATTTTATGAGAATACATACTTTTGTACTCTATGTTCTTTTAAATGGATATCTCTATCTAATGCATATGTATAGTTTATCTTAGTGACCATTCAGAAATATAAGTTTGTGCTGAAATTATAGATCACACACTTTCTGTGATTCTTTCACTTCCAAAGTATCCCATCTTAAATTATTTAATCTTGAACTTCTTTTCTACCATATTGGGCTGGTAAGCCTGCAATGCATCAGTGTGATTTTTCATATTGAAAACATTTTTTCTCTGCTGTAGCAAAGTACATTGGAGGATCTCTTCAGGAAACAAAATGCTAATATTCTTATCCCTTACTGTTGAAGGACTCTCCTCTGACTTCAGCTTGTTTTGTATACTTACTCCTTCTTTTGAATCCTTTTTGAAATATTCATGCATTTTTATCTACATGTTATAATTTTTATCC s panTro1.chrUn_random 27472257 3087 + 240967748 cataggatgtgtctatcttaagatttagatgataaatatttaaatttttttctaatgaggttgtaccacactctccaaccagcagagtatgagagaccttaatgaggtctacatctatttagttttagccaatacgataagtacagggttgggtagcattgtagttttaatttgtaatttctcaatcaataatagttaagacttttttatgtttattagccatttggagttaatatttatgaattatgaattctaaaccattcttaggtcatttttttcaattgggttatttgttgtctttttcttattgactttatttcttttgtgtctttttagcactagaccttggtggttatatgtattgaatatattttctcccacttgat---ttgtattttcgttcattttccagtgtcttttaatgaagacaaattcttaatttcaatgtagtcaagttataacttttaagttctatgtgtttatttaaaaatatttctctaaatatatcatgaagatattcttatatattaccatttaaaaaccgtatttccttgctatcacatttaatttttaatacttctagaaattacttttataagacttgagtaagggggaaaatcatgttttcatagaagaatacacagttgttttgccattactttaagagaatattgtatccAAATGGTTCTACAGTGGAACATATCTTACAATAAAATGGttataaaattaattatttttataaGACACTTCAATGTttctgaacttctttgtttctgatgaacagtgggcaattaatcataacattcttccctgtatgtgatgtttcctttctcactggttcattttaagattttctttttctttgacttttagcattttgtctataatgtggttaacatttttgttgtgtttagtttgaagctccttggatctctaagtcaatattttctacaaaatttgacaagttttcagttattatttcttcaaatattttgtttctctttctgtttctctttctggcactacaactataagacatgaacttcttggcaaggtatgttagtatatttatgtactgtttgtctttctgttacttagattgatctgttttcatggtaactggttattttttctgtcatcttcagtccttcattgagtctttcttttaatttattggacattttagctctaaaattccatcttttGTCCTTTCCTTGTCCTATCAGAATTCCGTTCTCCGTTCACTAattactaccatttttctttaaactttggacatatccactcattctttgaatattgcttaataagcttctgtgaaatccttcttgctaaatccaaaatttgacattaccttgaattttttattcagtatctttttctttattgtaagttatcactttcctgtttctttacattcatgaaaaattataaataacatactgtaggatatatggattctTAGAATTATTATCTTATTTTTGTCTGCTAAATAGTAACCTTGTTTGGACTTGAAATGCTAGCTTTATTTTCCAAGCATTAGGCATCAGCTAAAGTGTCTGCTCAATTTTTGTGCCTTCAAGATGCTGTTTTTAGGCTGGACTCTTAAAGATCTCtgagaaacgggttcacttggactggtcaccgacttgtctgagtccagtaagacagaacacccatgcatccataagtaatatgaaacgtgtttattacatgaaaataggtgggaagaaaaaacacaagtctagaattcatgtgaaccagtccgccaaggctcagaaaagctgcccggaatggatggaatcttatttgcatgtctcccacctgcactgcagctgaggaaccctggtaaacagcctgagctcggttttatacccctgggttgtca----ttttcggataaagtggggaaggacatcctgttttcaggagagggagggtggacaggttgaaacagagtccaggctttccagccagtccctccctattttaggatattacattcccaacatattttatagttattcatgagagctacaagtaaaaatggggggggaaactgggttagttcaaggccacctggagaattgtccCCCAGTATCCACTGTCTCTGCTTAATTTGTCTCTCAACATAAAAGAGACAGAGATTACcagttgaccctccttatctgtggggttttgcatcatggattcaaccaaccacatatcaaaaacatcaaaaaa-tgcatttgtattgaatatatactgactttttttgtccttattccctaaacaatacagcagatcaactatttacatagcatttatatcttattaggtattataagagaactagagattagttaaagtctgcaagagaatgtgtagaggttatatgtaaatattgcaccattttatattagggacttaagcatccatgggttttggtatccacaggggtcctggaaacaactcccacagatacagagaaatgactgTACTCAAAATTAGAAGCAAAATCTTCCTGGCATTTCCTTGTTTCTGGGGATTTCTACTAATTTACAGCTGCTCCATAGATTTGTTTTCTTTCCTTTGAATCTCCAAGT------------------------------TGAATATGGTTGAGGAATGCCATCAATTAATTCAATTAATAAGAAAACAAGTACATGGAACTCACCTGGAAGAGCTTTATTTTATGAGAATACATACTTTTGGACTCTATGTTCTTTTAAATGGATATCTCTA----ATGCATATGTATAGTTTATCTTAGTGACCATTCAGAAATATAAGTTTGTGCTGAAATTATAGATCACACACTTTCTGTGATTCTTTCACTTCCAAAATATCCCATCTTAAATTATTTAATCTTGAACTTCTTTTCTACCATATTGGGCTGGTAAGCCTGCAATGCATCAGTGTGATTTTTCACATTGAAAACATTTTTTCTCTGCTGTAGCAAAGTACATTGGAGGATCTCTTCAGGAAACAAAATGCTAATATTCTTACCCCTTACTGTTGAAGGACTCTCCTCTAACTTCAGCTTGTTTTGTATACTTACTCCTTCTTTTGAATCCTTTTTGAAATATTCATGCATTTTTATCTACATGTTATAATTTTTATCC a score=2624.0 s hg17.chr17_random 1418313 30 + 2618010 cattaagcttcagctttttgctgTCCAAGT s panTro1.chr14_random 10196175 30 - 43166525 cattaagcttcagctttttgctgaCCAAGT a score=49274.0 s hg17.chr17_random 1418856 313 + 2618010 CAAGAAAATTTTACATGACCATTTTACTCTCCCATCATTACCACAAGTAATGAATATTCATGTAG---TTTTTAAGAaaatatacactaagcagccactttacgctcagaactattttaggaacttgagatatatttcagtgaatgaaatagccaaaaagtattgccctaataaagctaaataaaacttgtgatagaaacagaataatgcataaacataatatataatcacattatatgtatttgaatagtgtatttgattcctga-ggaaaataattcatagcaagtaaaaatatgaaatatggaggttaaaaagg s panTro1.chrUn_random 27475344 310 + 240967748 CAAAAAAATTTTACATGACCATTTTACTCTCCCATCATTAC---AAGTAATGAATATTCATGTAT---TTTTTAAGAaaatatacactaagcagccactttatgctcagaactattttaggaacttgagatatatttcagtgaatgaaatagccaaaaagtattgccctaataaagctaaataaaacttgtgatagaaacagaataatgcataaacataatatataatcacattatatgtatttgaatagtgtatttgattcctga-ggaaaataattcatagcaagtaaaaatatgaaatatggaggttaaaaagg s canFam1.chr22 21577219 313 + 64236280 CAAAAAGTTTTTGCGTGGTTATTTTATTCAGCCACTGTTACCACAAGGAGTGAGTAATTATTTATTTATTTTTCCTTCAATATTTTTTGGGCAAGTGTGGTATGCTTAGAATTACTATAGGGACTTGAGATATG--TCAGTGATTGAACCAATCAGAAATAATTGTCTTAAAGAAGCAAAATTATGTTTGAAGTAGAAATAATGTAAAGCATAAACATAGTAGATAATGATATTAAC--AATTTTAGTAGCACATAAGATTCCTGGCTGAGAATAATTCAGAATAAGAAAAGATTTGGAATGTGGAAGTTCAGAGGG a score=74044.0 s hg17.chr17_random 1419169 506 + 2618010 tattagttttaaatactccaatcatggtagggattatt----gacaagataacatatcagcaaataattga-gaaagttcaaataattagccgtataa--acctggagagcaaggaatgtaaacaaagggaagaatcagtgcaaagatcatcgaacagtgtcatgcctagaaagttaga-aagaaatcaagaagacaagtgtaactggataaggatgagcaagttaga-----gtgtaattagtaattacgttgggaagacaattaaaactaagtaaaatagatccttaaaatttatcaaaaagactttggctttactctagataaaat-------aatgataagtgttaagaattgactgtggagaccaacaatgtgaccaagctgaacagttaaaacattattccgtgaataaaaggacaagaccttattagactggactttgacagtagcagtagagatatgcaaaagtagccatact-tgaatttgcatttataatggcacaatatcatgtcctaattgaaat s panTro1.chrUn_random 27475654 506 + 240967748 tattagttttaaatactccaatcatagtagggattatt----gacaagataacatatcagcaaataattga-gaaagttcaaataattagccgtataa--acctggagagcaaggaatgcaaacaaaggcaagaatcagtgcaaagatcatcgaacagtgtcatgcctagaaagttaga-aagaaatcaagaagacaagtgtaactggataaggatgagcaagttaga-----gtgtaattagtaattacgttgggaagacaattaaaactaagtaaaatagatccttaaaatttatcaaaaagactttggctttactctagataaaat-------AATGGTAAGTGTTAAGAATTGACTGTGGAGACCAACAATGTGACCAAGCTGAACAGTGAAAACATTATTCCGTGAATAAAAGAACAAAATCTTATTAGACTGGACTTTGACAGTTGCAGTAGAGATATGCAAAATTAGCCATACT-TGAATTTGCATTTATAATGGCACAATATCATGTCCTAATTGAAAT s canFam1.chr22 21579004 496 + 64236280 TATCAGTTTTAAAGA-TCAACTCGTTGTAGGGCTTACTGACAGACAACAtaatatttgtgtagataactgaggaaagttcaaggaattagtaatatgaatatctggggagggaacagtcaaggcagaggaatgtgtcagtgcaaagatcatcaagca----------tggagtatctgaggaaaaataaggaggaaaagagtagttggaaaggggtgagcaagttagacaatcgtatcagtagagacta--tcaggaagtcagtgggca-tcagaaatatagagttctgaaactcaatgaaaggactttgactttgatttgggtgaaatgggaatcagtgtttattgttaagaatacagtgtgggagcaagtaa----accagg-------------aagttattgcaataatgtgacagcaagatattattaaattgtattttagtagtggtagtagagaaatgcagaaacaataatagtctgaatatatgattataattacacaacatgatgtcttaattgaAAT a score=222146.0 s hg17.chr17_random 1419675 2405 + 2618010 gtttttgcagatgtatttttagattttgtgtgtttaacagaaagacaggaaagaaggGtgatatggtcaggctttgtgtccccacccaaatctcatcttgaattataatccctataacccccataatccccacctgtcaaaggagagacaaggtggaggtaactgaatcatgggggcagttctccccatgctgttctcaggataatgactgagttctcatgagatctgatggttttataaagggcttttaccccctttgcttggcatttctccttcctgttgccttggttagaaggttacttgcttcaactttgccttctgccatgattgtaagttttctgaggcctcctcacccatactgaactgtgagtcaatgaaatctctttacaaataacctagtctcaagcagttctttatagaagtatgaaaatggactaatacagtaaattggtactgcagagggtggggtgatgctaaaaagatacccaaaaatatggaagcaactttggaactagacaacaggcagaggttggaacagtttggggggctcaggagaaaacaggcagacatgggaaagtttggaacttcctagagacttgttgtatggctttgaccaaaatgctgacagtaatatggacaatgaagtccaggctaaggtggtctcaggtggagatgaggaatgtgttgggaactgaaataaaagggactctttctacaccttagcaaaggaactggtatttttgccccggttttggagatgtgtggaaatttgaacttgagagagatgatttagggtacctggcagaagaaatttctgaacagaaaagcgttcaagaggtgatttgggtgctcttaaaagcattcagttttatgcattcaccaagagatggtttggcattggagcttatgtttaaaagggaaacagagcataaaagttcaaaaaaatctgtagcccaacaagtgatagaaaagaaaaacccattttctgaggggaaattcaagctggctgcagaaatttgcataagtaaccaggaactaaatgtaaattgtcaagacaatgggcaaaattgctccagggtatgtcagagatcttggcgacagactctcccatcataggcccagagaccctggaggaaaaaa-cggtttcctgagctgggcccagggccttgctgcttcgtgcagtctcagaacatggtgccctgcattccagccatggctaaaagtggccaatgcacagctcaggccattgattcagagggtgcaagcttcaagccttggctgctcacacatggtgatggacctgcaggtgcacaggagtcaaaaattgaggtatgggaactactgcctagatttcagattatatgtagacacatctagatgtccaggcagacgtttgttgcaggggtagagcctacatggagaacacctgctagaacactgcaaaagggaaatttgggttcggggcccccacacagattccccattgaggtaatgcctagtggagttgtgagaagatggtcaccatcctcaagactccagaatggtaaatccactgacagcttgaactgtactggaaaagccacagacactcaatgccagctcatgaaagcagccagaagtggggctgtaccctgcaaagccatggggcagagctgtcctaggccatctgagcccacctcttgcattgggaagaccaggatgtgagacatgaagtcaaagatcattttggagcttaagatttgact----actctctagatttcagacttgcatttgttttggccaatttctcccactgggaacagtgtatttgcccaatgcctacaacctcattataactaggaagtaactaaattgcttttgattttacaggctcataggtagaagggacttgccttgtttcaagtgagactttggactgtggacttttgggttagtgttggaatgagttaagactttgggtgactgttaggaaggcataa-ttggttttgaaatgtgaaacggacatgagatttgagagggtctaggggcaaaatgatatggttaggctttatgtccccacccaaatctcatcttgaattgtaatccccataatccccacatgtcaagggagagaacagctggaggtgattgaatcatggggcagtttcactcatgctgttctcatgatagtgagtaatttctaa-tgagattttatggttt-tataaggggctcttccctgcttcacttggcacttctctttcctgctgccttgttaagaaggtgactttcttcctctttgccttttgccatgattgtaagtttcctgaggcctcccagccatgctgaactgtgagttaatgagagctctttcctttatgaattacccagtcccatgcagtgctttatagtagtatgaaaatggaataa s panTro1.chrUn_random 27476160 2413 + 240967748 GTTTTTGCAGATGTATTTTTAGATTTTGTGTGTTTAACAGAAAGACAGGAAAGAAGGGtgatatggtcaggctttgtgtccccacccaaatctcatcttgaattataatccctataacccccataatccccacctgtcaaaggagagacaaggtggaggtaactgaatcatgggggcagttctccccatgctgttctcaggataataagtgagttctcatgagatctgatggttttatacagggcttttaccccctttgcttggcatttctccttcctgttgccttggttagaaggttacttgcttcatctttgccttctgccatgattgtaagttttctgaggcctcctcacccatactgaactgtgagtcaatgaaatctctttacaaataacctagtctcaagcagttctttatagaagtatgaaaatggactaatacagtaaattggtactgcagagggtggggtgttgctaaaaagatacccaaacatatggaagcaactttggaactagacaacaggcagaggttggaacagtttggggggctcaggagaagacaggcagacatgggaaagtctggaacttcctagagacttgttgtatggctttgaccaaaatgctgacagtaatatggacaatgaagtccaggctaaggtggtctcaggtggagatgaggaatgtgttgggaactgaaataaaagggactctttctacaccttagcaaaggaactggtatttttgcccctgttttggagatctgtggaaatttgaacttgagagagatgatttagggtacctggcagaagaaatttctgaacagcaaagcgttcaagaggtgatttgggtgctcttaaaagcattcagttttatgcattcaccaagagatggtttggcattggagcttatgtttaaaagggaaacagagcataaaagttcaaaaaaatctgtagcccaacaagtgatagaaaagaaaaacccattttctaaggggaaattcaagctggctgcagaaatttgcataagtaaccaggaactaaatgttaattgtcaagacaatgggcaaaattgctccagggtatgtcagagatcttggcgacagactctcccatcgcaggcccagagaccctggaggaaaaaaacggtttcctgagctgggcccagggccttgctgcttcgtgcagtctcagaacatggtgccctgcattccagccatggctaaaagtggccaatgcacagctcaggccattgattcagagggtgcaagcttcaagccttggctgctcacacatggtgatggacctgcaggtgcacaggagtcaaaaattgaggtatgggaactactgcctagatttcagattatatgtagacacatctagatgtccaggcagacgtttgttgcaggggtagagcctacatggagaacacctgctataacactgcaaaagggaaatttgggttcagggcccccacacagattccccattgacgtaatgcctagtggagttgtgagaagatggtcaccatcctcaagactccagaatggtaaatccactgacagcttgaactgtactggaaaagccacagacactcaatgccagctcatgaaagcagccagaagtggggctgtaccctgcaaagccatggggcagagctgtcctaggccatctgagcccacctcttgcattgggaagaccaggatgtgagacatgaagtcaaagatcattttggagcttaagatttgactgactaccctctagatttcagacttgcatttgttttggccaatttctcccactgggaacagtgtatttgcccaatgcctacaacctcattataactaggaagtaactaaattgcttttgattttacaggctcataggtagaagggacttgccttgtttcaagtgagactttggactgtggacttttgggttagtgttgggatgagttaagactttgagtgactgttaggaaggcataacttggttttgaaatgtgaaatggacatgagatttgagagggtctaggggcaaaatgatatggttaggctttatgtccccacccaagtctcatcttgaattgtaatccccataatccccacacgtcaagggagagaacagctggaggtgattgaatcatggggcagtttcactcatgctgttctcatgatagtgagtaatttctaaatgagattttatggtttatataaggggctcttccctgcttcacttggcacttctctttcctgctgccttgttaagaaggtgactttcttcctctttgccttttgccatgattgtaagtttcctgaggcctcccagccatgctgaactgtgagttaatgagagctctttcctttatgaattacccagtcccatgcagtgctttatagtagtatgaaaatggaataa a score=41999.0 s hg17.chr17_random 1422080 306 + 2618010 GGAGGGGGAAAAAGAGAAAG---AAGAGAGAGATGAGAGCGAGATGTCAACACATAGATGTCTA-----TAGAAAAATTCTTGCTATCC--TCTATTCAGTCAGGACTACAGGTTCTTATGCAAGAGCTCTTCCATA-TTTATCATTGCTCTTATTACAATCTAGCATACTTAATTTTTTATTTTCCTAAATTATTTAATGGCCTATAATTGGCTGGTGTCTTTTTGAAGGTATTGTAGATATT-CAATAATGAATTGTTGATTAAGTGATTTACTGAATAAATAACAGTTCAACTGAATAGCTCATTAAATAATACT s panTro1.chrUn_random 27478573 306 + 240967748 GGAGGGGGAAAAAGAGAAAG---AAGAGAGAGATGAGAGGGAGATGTCAGCACATAGATGTCTA-----TAGAAAAATTCTTGCTATCC--TCTATTCAGTCAGGACTACAGGTTCTTATGCAAGAGCTCTTCCATA-TTTATCATAGCTCTTATTACAATCTAGCATACTTAATTTTTTATTTTCCTAAATGATTTAATGGCCTATAATCGGCTAGTGTCTTTTTGAAGGTATTGTAGATATT-CAATAATGAATTGTTGATTAAGTGATTTACTGAATAAATAACAGTTCAACTGAATAGCTCATTAAATAATACT s canFam1.chr22 21579756 280 + 64236280 ---GTGTATGGCAGAGAAGGTCTGACAGAGAGATG-------------AACACTTAGATGTCTAGTCTGTAGGCAAATATATGTTGTTCCATATATTTTATGAGGACTATAAATTCTTAAATATGAGCTTGTCCATCTTTTTTCATAGTTCTCATTATAGCCTATTATAGTTA----TTTATTTGCCAACATTATCTAATAGACT-TAGGTTCCTGATGTCTATTTAAAGGTATCAGAAATATTAAAAAAATGAATCATTGATTAAATGTCTAATTATGTGAATAACTG-----------------TTAAATAATGCT a score=13750.0 s hg17.chr17_random 1422386 147 + 2618010 AAtagctggacatggtggaacatgcctgtagtcccagctactcaagaggatgaggtgggagtatcgcttgagcctcggaggtggaggttgcagagagctgagattgtgccagtgcactccagcctgggagagagaatgagactccat s panTro1.chrUn_random 27478879 147 + 240967748 AAtagctggacatggtggagcatgcctgtagtcccagctactcaagaggatgaggtgggagtatcgcttgagcctcggaggtggaggttgcagagaggtgagattgtgccagtgcactccagcctgggagagagaatgagactccat a score=62088.0 s hg17.chr17_random 1422533 413 + 2618010 ctcaaaaaatgaatgaatgaatgaataaataaataaatACTGAGAAAACTGATCTCAAGTAAAAATAATGTTTACTAAAAACTGATTTGAAAATAATCACTTAAAAATATTTGCATGATCCTCTCTAATGATACACTGGAGTTT-GGGAAAAGATCAAGTGAGGTAAGAATGGAGAAGTCATTGCACTTTTAAATGCCCACAG--CCAAAGAGTA-TCATTAGGATACAACAATGAGTCAGCTCCCATGAAATTACAGCCATAAATCACACTAATGTAATGAAGATGAATTCTAGTCAAAAGGATTTGGGCCATTTGAAAACTTCTTAATC-AAAATAGTTGCAGAAAATGCAATTGAATTTTGTATAAAAAATAAAAGTCTGTGACTCCTCAGTGACTCCTCATCACAAGGATAAAA---- s panTro1.chrUn_random 27479026 398 + 240967748 ctcaaaaaatgaatgaatgaatgaatgaataaatA----CTGAGAAAACTGATCTCAAGTAAAAATAATGTTTACTAAAAACTGATTTGAAAATAATCACCTAAAAATATTTGCATGATCCTCTCTAATGATACACTGGAGTTT-GGGAAAAGATCAAGTGAGGTAAGAATGGAGAAGTCATTGCACTTTTAAATGCCCACAG--CCAAAGAGTA-TCATTAGGATACAACAATGAGTCAGCTCCCATGAAATTACAGCCATAAATCACACTAATGTAATGAAGATGAATTCTAGTCAAAAGGATTTGGGCCATTTGAAAACTTCTTAATC-AAAATAGTTGCAGAAAATGCAATTGAATTTTGTATAAAAAATAAAAGTCTGTGACTCCTCA-----------TCACAAGGATAAAA---- s canFam1.chr22 21580036 352 + 64236280 CTCATAAAAT---------------------AATA----CT-AAAAATTTGATACCCAGTAAAATTAAGGTTTACTAGAAAGTTAATTTGAAAGGATCACCTAAAAATGTCTGCATA----TCTCTAATGGTATGTTGGATTTTGGGGAAAGGATCAAGTAAGATGAAAATGGAGAAGTCATTACACTTTTATATACTTACAGTACCAGGGAACATTTATTAGAATACAATAGTGAGATAACTCCCATGGAAGTGTAATCATAAAC----------------------------GTAAAAAGAAATTGAGCTATTTGAGAAGTTCATAATCGAAAGTAGTTGCAAATAATCCAATTGAATTTCATACAAGAAA-ACAAGATTGTGATTTCTCa-----------tttaaaaaaaaaaaaaaa a score=30343.0 s hg17.chr17_random 1422946 176 + 2618010 TCTGTGATTTTTTAATGGTTCAGAACAATAGGATCAAGATAAGGAAAATAGATTA--TGAATGTTATGGTGggagtgaaggcttagttgggttcaattcccagcttttccacttactagcaacaagaccaaagaca--attt---attgttgtgtatttatatctttgtgcttaaagtggtga s panTro1.chrUn_random 27479424 176 + 240967748 CCTGTGATTTTTTAATGGTTCAGAACAACAGGATCAAGATAAGGAAAATAGATTA--TGAATGTTATGGtgggagtgaaggcttagttgggttcaattcccagcttttccacttactagcaacaagaccaaagaca--attt---attgttgtgtatttatatctttgtgcttaaagtggtga s canFam1.chr22 21580587 173 + 64236280 TCTGTGATATGGTAATGGTCTGGAGCAACAGGATTAAGATAAGGTAAATAGACTACCTACgagtgatggttagggtgca----------ggttcagtttccagctctgtcacttaatagctatatgaccaaagacatgatttaaaattgttgtgcaacaatttctttatacttagaatgagga a score=46820.0 s hg17.chr17_random 1423122 320 + 2618010 aaata--------------atagcacacaccttatagatttagtttttaaatgaaatgagttaGATATTTTGGAAAACATATGCCAAATGTTAAACCC---TGCATTTGTTTAATATCTCACA-----------------------ACACTGACTCAAAATCACTATTGAGATACAGAGATTTAAAGACTCTTCTTTTTTTCTTTCTTTTTTTCATTTTATAAAATAACTGGGATTATAACAAATAGGTTATCTTGAGAGAATCTCTACTTTTATATTTTAC-AATACAATGTGACTCTGAATATGCAAAAATAACAT-CTGGCTTGGAAAACATGTTAATAAGGAAGGAAGTTGGTAGGAT s panTro1.chrUn_random 27479600 320 + 240967748 aaata--------------atagcacacaccttatagatttagtttttaaatgaaatgagttaGATATTTTGGAAAACACATGCCAAATGTTAAACCC---TGCATTTGTTTAATATCTCACA-----------------------ACACTGACTCAAAATCACTATTGAGATACAGAGATTTAAAGACTCTTCTTTTTTTCTTTCTTTTTTTCATTTTATAAAATAACTGGGATTATAACAAATAGGTTATCTTGAGAGAATCTCTACTTTTATATTTTAC-AATACAATGTGACTCTGAATACGCAAAAATAACAT-TTGGCTTGGAAAACATGTTAATAAGGAAGGAAATTGGTAGGAT s canFam1.chr22 21581009 351 + 64236280 AAAtaaaatgagggtgttgatagcatacaccttgtagatttacttttaaaatgaaatgagttaaAC-CTTTAGAAAAAATATGCTGGATGTTCACATTGAatatacatatataatatataatatatatatatatatatatatatatatatatatataAAA-CAACATT--GACTCAAAGACTTAAAGAATCATCTTCCTTT-TTTTTTTTTTTCTTTCTAT----TAACT-GGAGCATCGTAAGTAGACTATCCTGAG-GAAAATCTGGTTTTGTATTTTACTACTGTAATGTGACTCTGAATATGCAAAAATTAAATGATAGCTTTGATTCAGTGTAAACATAAAAGTAAGTTGGCGGGCC a score=176254.0 s hg17.chr17_random 1423442 963 + 2618010 AAAATT-TAGTATAGTCTTTTTAAA-----ATTTCTTTTGAGACTATGTGACAAATATGCTGTCATACATCTTGATATGTAGTAAGCTGCTGTATGGTCAATGTGGGTTACAAC--------ACCGAGCTCT----GTTTAACTTACCATAGA----------AGAGTAAGGTTGTTGAACTGTTAGGGCCAATATTTTT-TAAAACATATTATTTCAACTTTTG----CTTAGACTTTTCACACCAAATTTC-TACTTTGTCGAAGTTTAAGAGCTG-----TTTTTTGACATTTAAAAGGCAGATGCACTCCTGAGGGATTCACTGGTAAAAGCCATTAGTGAATTTGCTGATATAAAACTTGCATGATAGCCTAAATCTTTTATAGAGTGTCTTTTGAAAAT------------GTGTGTGTGTGTTTgagagagagagagagaaagagagagagagGTTAGATGGTAATGGTAAATTACATTACATGAGTCTTCACCATAAACCTTCCACTTTACACTTTTTGATGTTTAATAAAAGAG-AATCACAAA-AACTGTATCCTCAGAGCCCTTGTTA-TGTTATCAT-------ATGAATGAA-----TATCCATGCCATA----GGTTTTGAGAAGCCATATAGAAATAAGTTTGGTGAAATTTTATTTATGAA-------------ACTGATAAAGTGATTTTACTTTT------CTGGAAACTCTG-------GGTGCCTATCAACTGTGGA-GC-CATAAGAATAACACTTCACATGAGTTCTATA-TATATCACAA----CTATAAAAGATTAAGGTA---------AAGGTGTTATATCC-----ATATCTATATT-------------TCTACTTTATTTCCATCATTTGA-TGT-----TTAGA------------AATAAAGCAGA------------GGGGAAGAGAAGTATACTGTTTGCAATAATAA----TTCTAACTTCTGTAGT-TAAATGTATAA------TGTAGTATTTTTAGCAGAAAAGATCTTTT---------------------------TGCAGCTAATTTTGAA---ACTTTAA-AAAGTCAAAATTAGACTTCTGACTTTGGGAAAAGTTGATGTAGATTTATTTTTCTGGTTTCTA s panTro1.chrUn_random 27479920 955 + 240967748 AACATT-TAGTATAGTCTTTTTAAA-----ATTTCTTTTGAGACTATGTGACAAATATGCTGTCATACATCTTGATATGTAGTAAGCTGCTGTATGGTCAATGTGGGTTACAAC--------ACCGAGCTCT----GTTTAACTTACCATAG--------------GTAAGGTTGTTGAACTGTTAGGGCCAATATTTTT-TAAAACATATTATTTCAACTTTTG----CTTAGACTTTTCCTACCAAATTTC-TACTTTGTCGAAGTTTAAAAGCTG-----TTTTTTGACATTTAAAAGGCAGATGCACTCCTGAGGGATTCACTGGTAAAAGCCATTACTGAATTTGCTGATATAAAACTTGCATGATAGCTTAAATCTTTTATAGAGTGTCTTTTGAAAAT------------GTGTGTGTGTGTTTgagagagagagagagaaagagagagagagGTTAGATGGTAATGGTAAATTACATTACATGAGTCTTCACCATAAGCCTTCCACATTACACTTTTTGATGTTTAATAAAAGAG-AATCACAAA-AACTGTATCCTCAGAGCCCTTGTTA-TGTTATCAT-------ATGAATGAA---------CATGCCATA----GGTTTTGAGAAGCCATATAGACATAAGTTTGGTGAAATTTTATTTATGAA-------------ACTGATAAAGTGATTTTACTTTT------CTGGAAACTCTG-------GGTGCCTATCAACTGTGGA-GC-CATAAGAATAACACTTCACATGAGTTCTATA-TATATCACAA----CTATAAAAGATTAAGGTA---------AAGGTGTTATATCC-----ATATCTATATT-------------TCTACTTTATTTCGATCATTTGG-TGT-----TTAGA------------AATAAAGCAGA------------GGGGAAGAGAAGTATACTGTTTGCAATAATAA----TTCTAACTTCTGTAGT-TAAATGTATAA------TGTAGTATTTTTAGCAGAAAAGATCTTTT---------------------------TGCAGCTAATTTTGAA---ACTTTAA-AAAGTCAAAATTAGACTTCTGACTTTGGGAAAAGTTGATGTAGATTTATTTTTCTGGTTTCTA s canFam1.chr22 21581360 966 + 64236280 AGAATTATTGTATAGCATTATAAAA-----ATTTCTTTTGAGACCAAGAGACATATGTGCAGTCATATTTCTTGACATGTGGTAAGCTGCTGTATATACAATTTGAATTATA----------ACTGTGTCAT----GTTTAAGTTACCGCAGA----------AGAGTAAGTTTCTTGAACTATCAGGG-CGAGATTTTC-TTTAACATATTATTCCACTTTTTG--CTCTTAAACCTTTCACACCAAATTCC-TGCTCTTTTGAAGTGTAAGAGCTG-----TATTTCAACATTTAAAAAGCAGA---ACTCCTGAGGGATTCACTGGTAAAAGCCATTAGTGAATTTGCTGATATAAAACTTGCATGATACCATAAATCTTTTATAGAGCATCTTTAGAAAAtgtgtgtgtgtgcgtgtgtgtgtgtttgtgtgtgtgtgAGAGGGAGAGAGAGCGAGATTAGGTGAGGGTGGTAAATTGCATTACATGAGCCTTCAACGTGAGCCTTCAACATTATACTTTTTGACATTTAATAAAATGA-GATCAAAAA-AGTTATATCCTCAGAGGCCTTGTTATTGCCATCAT-------ATGAATGAACTGAATATCCATGTCATA----GGCCCTGAGAAGCAA-ATATATAT------------ATTTGACTTAGGA--------------------AAACCGATTTCACTTTTCCTCTGCTGGAAACACTA-ACATTCACTCTTTATCTGCTCTAACTGC-CATAACAATAACACTTCACATCAGTTCTCTGTTATATCCTAG----GTATAAAAGATTAAGTTA---------AA---TTTATATCT------CATGTACATT-------------TCTATATCATTACGATCATCTGGATTT-----TCAGA------------AATAAAGCGTA------------GTGAATGAGAAGTACACAGTTTTCAGTAATAATTATTTCCATCTTCTGTAGT-TATATG-----------TGTGGTATTTTTGGCAAAAGAGTCCTCTA---------------------------TGAAGGTAATTTTACAGTTACTTTAAGAAAGTCAAAATTagactatcgattttggtaaaa-ttgatatagactcactcttc-----cctg s galGal2.chr1 39256048 1083 - 188239860 -AAATTACATTGTATTATTTTCAAAGTATGATTTACTTT---ACCAAGTAACATGTATATATAAATAGCCATTGAAATGTATAGGACTGAATTAGAGGTAAGACATATATCACCTCTAAGAATCCAAATTCTTAAAATTTAATATTTGTTAAATACTGTGACGTGTAGAAAGTTTTTAATCTTTGAGACTGAAGACTTTCATATATTTTAATATTTTATCTTCCATGCCCTAGAACTCTTTCTACCAACCAGCATACAATTGTGATGTTTAAGAGCTGCTCGATACTTTGGCATTTTTCAGGCAGCATGACTCCCATGGGATTCATCAGGGAGAGCCATTAGTGCACTCACTGGCTTAAAAATTGCATGATCCTATAAATCTTTTAACAAGCAGATTTAGAAGAT------------ATTTTTGTG-------------------------------AAGGTTACATGTGTAAGGAAAGCTACATTACATGAGCCTGAAATGTGCACCTTCAATATTACACTTTCTGACATTTAATAAAATAGTGATTGCAAAGGGCTGCATCCTCAGAGGTCTTGTTA-TGCCAATACCAGCGTGATGAGTGTA-----CCCTCAAACTGTCTTCTGTTTTTTATTTGCAAAATAATGTTTTATTT------TTCTGAACTATGTAGTAAAACCTGCTTACTTATAATAGTATTCTTTTTATCT----TTGAAGATTTTTTTCAAGTGGTGTCTTATTACATTAAATACAAATAAGTATTTAATTTAAGAAGATTTATATA-TGTGCACCAATATTGTAAACAACATTAAATTACTTACAGTTAA---TTTATACTCTAATGATGTCATTGTTTTGATCTTGGTAATCTGTATAATTTTCATAATTTGATTGTGAATGTCAGAACTCTTTGATTTAATATGTCAGAATTGTCTTCTTTGGAGAATAAAAGTGT-TTGCTTGTATCTACAA----AACTATTACTTATTATGTAAATGAAAAAGAAAATGATGGCAGGGTAAAGTGAAACAATCTCttttattttattttatttcattaataatCTAGAAATAAAGCTGAA---ATATGAA-AAAGTTTTACT---ACTACCTACTCAGTGAAA--CTGAACTGCATTT-TTAATCTAATGTCTA a score=12635.0 s hg17.chr17_random 1424405 85 + 2618010 CTATTACCTCCTCACCCACTTCTTCCACAAAGTACACCTAAATATCCTGAACATCATTTAACATATACAACCATGAAATGACTCT s panTro1.chrUn_random 27480875 84 + 240967748 CTATTACCTCCTCACCCACTTCTTCCAC-AAGTACACCTAAATATCCTGAACATCATTTAACATATACAACCATGAAATGACTCT s canFam1.chr22 21582326 68 + 64236280 cacttatcttcc-----------------aaatactcctaaataacctggaaataattgaacagatacagtcataaaaagactct a score=140846.0 s hg17.chr17_random 1424490 1525 + 2618010 ATCAGGTATCAtagaacagaaacatgaaataattgaaataaaaaccttgctagatgagtttgatcgtagaatggagatgatggcagagaacagaattagtgaactagaagacttatcaatagtgtttgctcgatcttaacaacacagagaaatcgactttaaaaatacacagagtgtaaatgatatgtaaaagagtaacaaaagatttagcatccatatcattgcggtcccagaaggagagggaaaaatgaaagggcaggacaaacatttgaagaaataatatctgaaaacacccaaacttaagacatgaacccacatacttaagaagctgagcaaaccccaaagatgattaaaaacaaacaaatgaaacctttaacaagacagacaaaaattatacttataaaaactatagg-aaaaaaaaaccttaagaaaaccagagagaagcaacacataatctctagaggaatgtaacttcaaatgacagcccacttctcatccaaaaccattgagaccaaaagcaaatagtggaacacatttttaaccttcaaattaagacaattgccaaagtaaatcttctgtcaggtgaagctatcctttagaggtcaaaaaaagaaagccattctcaaagaaaaactaagaaatttttccaccataggatctacccttagggcatgcaaaaagaattttcccaatggaaataaagtggtaacaaaagagtagaaacttcagacaaggataaaacaatgtataacaatgtgggtaaacatatagactatccttcatttcatgagtttcttaatcagatttaatggtggaaacagaatttatattataactcaattgatacggggctcaatgtatgcagagaacatatttaagaaaactgtgaattttgaaaatgggagattaaatagatctaaattaaagtaagttttctatacattgatgtcaataggctacgataagtgcatgcatagaaacactagaacaagcattaagaaatctatacaaacacttaaacacattagcaaaggtaaatcaaaaCTAAAGTGATAGAAAAAGTTGTATCAtcaaaatgtatcataggcttaagtgtaacatgtaaagctatacaaattttaCTGAGTTTTGGTGAAATACTCCTCACAATGTTGAGTTGTCTTTCTGCTCTCAATTTTCTAATACACTCTTCTAACAATCACTAAACCATGCAATACATTTGTGTGATTAAAAGCCAGGATCCTGGCAGGAAAAGAGAATTCATCACAAAGACTTGCAACAGTGGAAGTTAATAACACCCAAAAGGGACAACAGGAGGAAAACAAGGACAAAATACTCCAGTCCTCTATACTCTTCTTCCCCTTTATCTTCTTTTGATGCCTCCTTTTTGTCAAACTTAACTTGAAGTCTGCTGAAAACTAAGCCTGAGAGATGCAATCTGCAGAGATTAGCATATGGACAGAAGGATGGAGCATGTATATGAGAGGCAGAGAAAGAAACAGAAGCAGAAAATCACTATATTTTT s panTro1.chrUn_random 27480959 1522 + 240967748 ATCAGGTATCAtagaacagaaacatgaaaaaattgaaataaaaaccttgctagatgagtttggttgtagaatggagatgatggcagagaacagaattagtgaactagaagacttatcaatagtgtttgctcgatcttaacaacacagagaaatcgactttaaaaatacacagagtgtaaatgatatgtaaaagagtaacaaaagatttagcatccatatcattgcggtcccagaaggagagggaaaaatgaaagggcaggacaaacatttgaagaaataatatctgaaaacacccaaacttaagacatgaacccacatacttaagaagctgagcaaaccccaaagatgattaaaaacaaacaaatgaaacctttaacaagacagacaaaaattatacttataaaaactataggaaaaaaaaaaccttaagaaaaccagagagaagcaacacataatctctagaggaatgtaacttcaaatgacagcccacttctcatccaaaaccattgagaccaaaagcaaatagtggaacacatttttaaccttcaaattaagacaattgccaaagtaaatcttctgtcaggtgaagctatcctttagaggtcaaaaaaagaaagccattctcaaagaaaaactaagaaatttttccaccataggatctacccttagggcatgcaaaaagaattttcccaatggaaataaagtgataacaaaagagtagaaacttcagacaaggataaaacaatgtataacaatgtgggtaaacatatagactatccttcatttcatgagtttcttaatcagatttaatggtggaaacagaatttatattataactcaattgatacggggctcaatgtatgcagagaacatatttaagaaaactgtgaattttgaaaatgggagattaaatagatctaaattaaagtaagttttctatacattgatgtcaataggctacgataagtgcatgcatagaaacactagaacaagcattaagaaatctatacaaacacttaaacacattagcaaaggtaaatcaaaactaaagtgatagaaaaagtTGTATCAtcaaaatgtatcataggcttaagtgtaacacgtaaagctatacaaattttaCTGAGTTTTGGTGAAATACTCCTCACAATGTTGAGTTGTTTTTCTGCTCTCAATTTTCTAATACACTCTTCTAACAATCACTAAACCATGCAATACATTTGTGTGATTAAAAGCCAGGATCCTGGCAGGAAAAGAGAATTCATCACAAAGACTTGCAACAGTGGAAGTTAATAACACCCAAAAGGGACAACAGGAGGAAAACAAGGACAAAATACTCCAGTCCTCTATACTCTTCTTCCCCTTTATCTTCTTTTGATGCCTCCTTTTTGTCAAACTTAACTTGAAGTCTGCTGAAAACTAAGCCTGAGAGATGCAATCTGCAGAGATTAGCATATGGACAGAAGGATGGAGCATGTATATGAGAGGCAGAGAAAGAAACAGAAGCAGAAAATT----TTTTTTT a score=21192.0 s hg17.chr17_random 1426015 234 + 2618010 TCTGACAATGAAGAATTTTTGCTTTATCTAACTCATTACCCAAAGTAGAGTTCTTTTCCAGGAAGCTATTTAATTACACATATCAATAGTCCTCTTTGCCAGATATAATCCAAAACATGCAAACTAAAATAGAGGTACAATACGCAAGGTATAATAAAACAACGAAAATACCAAGTGAAAAGAACTATGACTGAGTCAAGGATTACAGAGAAATAAGAAAATACCACTTTAAGG s panTro1.chr14_random 10259177 234 - 43166525 TCTGACAATGAAGAATTTTTGCTTTATCTAACTCATTACCCAAAGTAGAGTTCTTTTCCAGGAAGCTATTTAATTACACATATCAATAGTCCTCTTTGCCAGATATAATCCAAAACATGCAAACTAAAGTAGAAGTACAATATGCAAGGTATAACAAAACAACAAAAATACCAAGTGAAAAGAACTATGACTGAGTCAAGGATTACAGAGAAATAAGAAAATATCACTTTAAGG a score=32908.0 s hg17.chr17_random 1426249 224 + 2618010 AGTCAAGGGAAA-TTCATAAAGTATTGGAATCTTGAAGGATTATAGAGAGTTAGGTAAAGTATCACAGAGGGGGAGAGTGTGAGAAAGGATAATAA-TCTAAAAAATATAGATGGGTTTTAATAAGATTTAAATGTTGGTTATATGGAAGAAACTACGAAGAAAATGATAGCTCAGTTAAGCAAAAGGAAAGTCATGGACAACCATTTACACTGAGATAAAAAATT s panTro1.chr14_random 10259411 222 - 43166525 AGTCAAGGGAAA-TTCATAAAGTATTGGAATCTTGAAGGATTACAGAG--TTAGATAAAGTATCACAAAGGGGGAGAGTGTAAGAAAGGATAATAA-TCTAAAAAATATAGATGGGTTTTAATAAGATTTAAATGTTGGTTACATGGAATAAAGTATGAAGAAAATGATAGCTCAATTAAGCAAAAGGAAAGTCATGGAGAACCATTTACACTGAGATAAGAAATT s canFam1.chr22 21604437 198 + 64236280 AGTCAAGGGAAGTTTTATAAAGTAATGACGTCTTGAGAGATTAGTGGGAGTTGCATGAAGTGTCACAAA-------------AGAAAGTGTGATAAGTCCAAAAACTATGGAAGGATTTTAATAAGATTTAAGTGTAGGCTAAGTG--------TACCAAGACAATGGCAGCACAGTTAA-CAACAAAAAAATCATGTCAAGT------CACTGATGCAAAGaatt a score=40651.0 s hg17.chr17_random 1426473 253 + 2618010 TTAATTTTACTTTACAGAAATTGAAATCATTGAATCAGGTGAGTGGCATGGTTAGCTTTCTATGACAGAAAGACTGCTCTGTAAG---------------TTTGGAAAGAGGCAAACTGGA--------GGCTA---AAAGCAGCCCAGGCATTAGCA----ATCTGGGAGAGCGATG---------TACGTATAAATCACAGATGTGAAAGTGAGCATGAAAAAGGAGGCCATATTTTATGTGGGACGAAGTTGAATCTGTACCTATTATTTCTCAGAGTAACTACTTTTA s panTro1.chr14_random 10259633 276 - 43166525 TTAATTTTAGTTTACAGAAATTGAAATAATTGAATCAGGAGAGTGGCATGGTTAGCTTTCTATGACAGAAAGACTGCTCTGTAAGAAATACAGAGTTTTGTTTGGAAAGAGGCCAACTGGACAACTGGAGGCTA---AAAGCAGCCTAGGTATTAACA----ATCTGGGAGAGCGATG---------TATGTATAAATCACAGATGTGAAAGCGAGCATGAAAAAGGGGGCCATATTTTATGTGGGACAAAGTTGAATCTGTACCTATTATTTCTCAGAGTAACTACTTTTA s rn3.chr15 72290437 226 + 109774626 TCAATTTTTTCTCATAGCATTTGAGAAAAGTGAATTTGGCCAGTGAC-----------------------AGATTTTTTAGAAAG---------------TTCAGAGAGCACCAAAGCAGA--------GGCTG---ACTGCCATCAGGGAGTTGACA----TCCTGACACTCAGCTG----------AGGTGGATATCATAGAGGTGAAAGTATGCATGAAGAA-AAGCATATATTTTCTGTTCTTCAAGG-TAAATCTGTGCCTGTCA-ATCTTAAAATCACGGATTTTC s canFam1.chr22 21604635 281 + 64236280 taaattttattttaaaaGCATTGAAG-AGTTAGATTATGTAAGTAAAATGATTAGCTTTCTGTGTCAGAAAGATTGCCATATCAGAAATATAGAATGTG-TTTGTAAAGAGGCAAGCTGTA--------GGCTGTCCTCAACAACCTGGAAGTTAATGTAGCATCCAAGAGAGTGACATTTGTGACATTTGTCTAAATTAAGGGTGTGAGACTTAGCCTGGAGAGGAGGGGCATATTTTATGGAGCACAAGTTTCAA-CTGTGCCCAGCATTTCTAAGAGTGATTACTTTTA a score=89070.0 s hg17.chr17_random 1426726 391 + 2618010 CTTGTATTGACTAATATCTATAGAACACTTTGTTTTCCAAATATGTTGGTGAGTCTCT---AAATAGATCTATAAAAATGTTGGCAGTGCTCATGTGAGTTTAGGGTGAGGATTCATTGG---TGAGAGTATTTTTATTTGTGA--GTATTTTTATCTATTGTTTTCAGTGACAACTTTTATGAATTGTTTACTGGGACAAAAATTATCTGAACTGTAAAAAAAA--------AATAAAG----ATTTTGTCTAACATC--CGTCAGGGTTGTTACCAAGTGTATGTAAACTGTGGAAGCCCTTATCTTGGTGAATAGCTTAAAACAGGCACTTGATAGATG----TTTCCTTCCA--CCGCACTTTCTTCCATTACTCTGAGTGGAATCTG-CAAATGCCTAAGTCTGCTGAGTTATGC---------------- s panTro1.chr14_random 10259909 389 - 43166525 CTTCTATTGACTAACATCTATAGAACACTTTGTTTTCAAAATATGTTGGTGAGTCTCT---AAATAGATCTACACAAATGTTGGCAGTGCTCATGTGAATTTAGGGTGAGGATTCACTGG---TGAGAGTATTTTTATTTGTGA--GCATTTTTATTTATTGTTTTCAGTGACAACTTTTATGAATTGTTTACTGGGACAAAAATTATCTGAACTGTAAAAAAAA----------TAGAG----ATTTTGTCTAACATC--CATCAGGGTTGTTACCAAGTGTATGTAAACTGTGGAAGCCCTTATCTTGGTGAATAGCTTAAAATAGGCACTTGATAAATG----TTTCCTTCCA--CTGCACTTTCTTCCATTACTCCGAGTGGAACCTG-CAAATGCCTAAGTCTGCTGAGTTATGC---------------- s mm5.chr14 81684447 358 + 117079080 CTTTTACTGTCTGACATCCAGAGAGCATATTTTTCTGTA-----GTCAATTTGTCTCT---ATTAATATCAATAGAAATAACTATGGTGTTCATATGAGTTTAAAGT----ACTCATTAG---AAATA--------ATTTATAATGGCAT------------CTTTTAATGACAAACTAAGAGAATTGCTTAT-----CAAAAACAAGTAAACCCCCAAAGAAAAACTAAATAAATAAAGGGAAATTGAGGTTAACAT----ATCCAGATTATTATCAGACATATACAAATG--------CCCTATCTCAGTGAG----TTAAGTTAGACATTTGCCAAGTG----TTTACTTCCATTCTGTGTTTTC-TCTTTTAAGTTTATTTGAAATTG-TTAATATCTAAGTATAGTAAAATGCAT---------------- s rn3.chr15 72290689 368 + 109774626 TTTTTACAGTCTGATATCCAGAGAACATTTTGCTCTGTA-ATTTATTAATTAGTCTCTAAGAAATATTTCAATAGAAACATCTGTGGTGTTTATATGAATTTTAAGT----CATCATTAG---AAATT--------ATTTTTAAGGGGGT------------CTTTTAATGACAAGCTAAGAAAATTGCTTGTTTGATCAAAAACCAAAATCACCGAAAAAGAAA-AATAATAAATAAAA----ATTATAGTTAACACTCACATCAGGTTTGCTATCAGATATATACAAATG--------CCCCATTTCAGTGAG-----TCATTTAGACACTTTCCAAGTG----TTCACTTCCA--TTATATTTTTATCTTTTAATTTTATGAGAATTTGTTAAAAATCTAAGTATGGTAAAAGGCAA---------------- s canFam1.chr22 21604916 386 + 64236280 CTTATATTGGTTAATAGCCACAAAATATTTTGTTTTCAG-ATGTGTTAATGAGTCTCT---ATAGCAATCTGTAAGAGT-TTGGCAATTCTCAGGTAAGTTTAGGAT----AACTATTTGTTTTGAGAGTGTATTCATTTGTGAGGGTAT-----------GTTTTCAGTA--AAATTTCATGGATTGTTTAATTGGACAAAAATAATCAGAACTGTGAGAAAC-----------TGGGA----ACTG----TAGAACC--GATCAGAGTTGTTACAAGATGCATACATATG---GAAGCCCTTATCTCCATGACTAGCTGAAAATTGGCACTTGATTATTGTGACTTTCCTTCCC-TCTTTCTTTCCCTCTTTTACTCTTACTGGAATCTG-CAAATACCT--GTCTGTGAAATTGCATTAAAAGGAAATAATGC a score=198183.0 s hg17.chr17_random 1427117 649 + 2618010 TGAAAGAAAATAATACTTGAATTGCAAAA-GAAAATGTTCTGTATAAGTTAGAAAGCTA------TTTTGTTTAGTTT------------------TCTGTATACACTCATATATTTACAT------AATCAGTGGTTAT---CAACTTGCATCATGTTTTGTGATGTGTGGatattagatagataaaaatataggtacatatat--gtacatataggtatacatatatttacacacacatataGAGAGAGAGAGAGAGGAGCGAGCAATAATTTTCATCTTTTATGTAAAGATT-----GCA----AGACAGTG----TTATTTTAGTTGAATAAACTGAGGCATTTATATCTTCCTGTATATCAAAATAATACTCTATTGCCATATTGGCTTAGCACAAAACATAAAAACGTAAGATATC-TTTTTCTGCCAACCTATTTCACAGAAGCTCATTTATCCATCTATTCCTTCACAGACTGAAATATTG-AGAGACTTTACGCTAAAGCTACAAAGAAGCTTTTCTTTAGAAAAATGTATTTCAGCAATTGCTTAGTAATGT----------CGATCAAGCTATAAATAT-AACATGCTCACTAGAAATACTTTGTTTAAGGGGAAAACAAATATTGCATACCTTTTTGGGTTGTTCATTCAGAAAACCAAAGTAGCGTCTGTTTAGGGAGGGATAAATGGATTTTCTATT s panTro1.chr14_random 10260298 646 - 43166525 TGAAAGAAAATAATACTTGAATTGCAAAACAAAAATGTTCTGTATAAGTTAGAAAGCTA------TTTTGTTTAGTTT------------------TCTGTATACACTCATATATTTACAT------AATCAGTGTTTAC---CAATTTCCATCATGTTTTGTGATGTGTGGATATTAGATA----AAAatataggtatatatatatgtgcatataggtatacatatatttacacactcatatatataGAGAGAGAG--GAGCGAGCAATACTTTTCATCTTTTATGTAAAGATT-----GCA----AGACAGTG----TTATTTTAGTTGAATAAACTGAGGCATTTATATCTTCCTGTTTATCAAAATAATACTCTATTGCCATATTGGCTTAGCACAAAACATAAAAACTTAAGATATC-TTTTTCTGCCAACCTATTTCACAGAAGCTCATTTATCCATTTATTCATTCACAGATTGAAATATTG-AGAGACTTTATGCTAAACCTACAAAGAAGCTTTTCTTTAGAAAAATATATTTCAGCAATTGCTTAGTAATGT----------AGATCAAGCTGTAAATAT-AACATGCTCACTAGAAATATTTTGTTTAAGGGGAAAACAAATATTGCATACCTTTTTGGGTTGTTCATTCAAAAAACCAAAGTAGTGTCTGTTTAGGGAGGGATAAGTGGATTTTCTATT s mm5.chr14 81684805 572 + 117079080 TAGAAGGAAACAATGCTAGAATTTTAAGA-GAAAAT------------TTAGTATGTTC------ATAGATTGTTTTT------------------CCTTTATGGTCATACATGTTTA--------------------------AACTGAAATCA------------------------ATA----AAAATAT-----------T---------------TAAGTATTTTGTGATAGGTAGATAAACAGAGAGATA---AAGCAGAGATATTTTTTCCTTGCTAATGTAAAGATTTATTAAGA----AGATATTGCTATTTGTTTTAGTTGAGCACACTACGACATTTATCCTGTCTTACACATCAAGGCGAATTCTGAGTGTCATACTTCTCTAAAATAAAA-AGAAAAATTCAAGATGTT-ATTTATTGTGAATCTATTTTATAGAAGTTCATTTATTCAGCTATTTATTCACAAACAGAAATATTGAAAAAACTTTATTCTAAATCC-CAAAGAAGCTTTACTTTAGATCAATTTATTTGAGCAATTGCTTAGCAAAGC----------ATAGCAAACTGTAAATAT-ACCACGTTCACAAGAAGTACATTGCTTAAGGAGAAAATAAATAGTGCATAATTTTTCAGTTTGCTCATTCA-AAACCCAAAACAGCATCTGTTTAAGAAAAGACAAATGGATTTTCTATT s rn3.chr15 72291057 600 + 109774626 TACAAGGAAGCAATGCTAGAATT-TAAGA-GTAAAT------------TCAGTATGTTCATAGTTTTTTGTTTTGTTTGTTGGTTTTTTTTTTTTACTTTTAGGTTCATGTATATTCAAACTCA---AAGCAGTAAAAACATTTAAGTTCCATCATATCTTGTGATAGGTCGATTA---ACA----GAAAGATA-----------------------------------------------------------------AAGCAGAGAAG--TTTTTCTTACTAATGTAAGGATGTATTCAGA----AAATATTGCTATTTGTCTTAGTTGAACACACTGGGGCATTTATCCTGTCTTCCCTATAGAGGCGAAGCCTCAGTGTCATACTTCTCAGGTTTGAAA-AGAACAATTGAAGATGTC-ATTTTTGGTCCATCCATTTCACAGACGTTCATTTATTCAGCCATTCATCCACAAACAGAAATATTG-AAAAACTTTGTCCTAAACCC-CAAAGAAGCTTTGCTTCAGATCAATTTATTTGAACAATTGCTTAGCAAAGC----------AGAGCAAACTGTAAATAC-ACCACGTTCACAAGAAATGCGTTGCTTAAGGAGAAAATAAATATTGCATAATTTTTCAGTTTGTTCATTCA-AAAACCAAAACAGCATCTGTTTAAGAAAAGACAAATGGATTTTCTATT s canFam1.chr22 21605490 592 + 64236280 TAAAAGGAAATAATGCTTGAATTACAA---ATAATTATTCTATATGAGTGAGGAAGCTA------TTTTGTTTAGTTT------------------TATGTCCATTCATTTACACAGAACCCAAGGCAATCAAAGATCAG---CAACTTCCATTGTATTTTGTAATGTGTGGCT-----ATG----TAGCTATG--------------------------TAGATA-------------AGGTAGACAATGATAAG---AAGTAATGTTATTTCTTCTCTGTTGATGTAAACATT-----GTATTTTGAGCAGTG----TTGCTTAAGT--AACAAACTGAGGTACTT--------CTATGTATT----TGATACTCT-TTCTCATACTTTATTGTTAAAAAAGGTAAGACTATAAGACATCTTTTTTTTGTCAACCTATTTTACAGATGCTTATTTGTTCATCTATGTATTCACTTACAGAAACATTG-AAAGACTTTTTTCTAAACTT-C--TTAAGGTTTTCTTTGGATCAATTTATTTGAAGAATTGGTTAGTAAAGCTTACAGAACAAGATCACAGTGTAAATATAAACACGTTTACTAGAAATACATTATTTAAGGAGGCAATAAATATTGCATAAATTTTCAGGTTGTTCA---------CCAAAGCAGCATCTGTCTAAGAAGGGGTAAATAGG-TTTCTATT a score=7241.0 s hg17.chr17_random 1427766 16 + 2618010 AAAGGGACTTTTCAAC s panTro1.chr14_random 10260944 16 - 43166525 AAAGGGACTTTTCAAC s rn3.chr15 72291657 16 + 109774626 CCAGGGACTTTTCAAC s canFam1.chr22 21606082 16 + 64236280 CAAAGGACTTTTCAAC a score=138833.0 s hg17.chr17_random 1427782 291 + 2618010 AAAAACAGTAGAAAAGGAGACCTTTCATTTGA--------AGAAGTCTTTATAACAAACAACACTTTGTTATCTTAGTAAGAAAGACTATTTTCTTCGCAGGAACCAATACCTAACAACTAAAAACGGAAGATAAAGACGTATTGTTCAGAGCAATTACGCCGGAAAGAAACATGAATAAAGACAGTGGCTTTGTGTCATTTTCAAACACATCTCTTGAGGAAGAAATC-------------AGTTATGAGGCTTCAAAAATTGAAAGTAGGACATTT---AAAAAAATATGTAAATCTACTCTTCTG--TTCCATT- s panTro1.chr14_random 10260960 300 - 43166525 AAAAACAGTAG-AAAGGAGACATTTCATTTGA--------ACAAGTCTTTATAACAAACAACACTTTGTTCTCTTAGTAAGAAAGACTATTTTCTTCTCAGGAACCAATACCTAACAACTAAAAACAGAAGATAAAGATGTATTGTTCGGAGCAATTACACTGGTAAGAAACATGAATAAAGACAGTGGCTCTGTGTCATTTTCAAACACATCTCTTGAGCAAGAAACCAGAAACACT--GTAGTTATAAGGCTTCAAAAATTGAAAGTAGGACATTT----AAAAAATATGTAAATCTACTCTTCTG--TTCCACT- s mm5.chr14 81685478 300 + 117079080 AAAAACACTAG-AAAGGAGACCTTTCATTTTGGAATCAATAAAAGTCTACATAACAAACAATATTTTGCTCTTTTAGCAAGTCAGTCTA-TTTCTTTTCACGAACCAGTATCTAAGGAACAAGGATAGAAGACAAAGATGTATTGTTCATAGCAATTGAAGTGAAAACATACATAAATAAAAGCTGTGGCTTTGTGTCAGTTTCAGACACTGCTTTTGTACAGAACACT-GAGATATC--ATAACTATAAAGCCTAAACAAAGTAAGATACGGCATTG---GAATCAGTTCATGA---------TCTGGTTTGAGTT- s rn3.chr15 72291676 295 + 109774626 AAAAACACTAG-AAAGGAGACCTTTCATTTAG-AATCAATAAAAGTCTACATAACAAAAAATATTTTGCTCTTTTAGCAAGAAAGTCTT-TTTCTTTTCAGGAATCAGTATCCAAGGAACAAGGATAGAAGACAAAGATGTATTGTTTATAGCAATTAAAGTGAAAACCTACATAAATAGAGCTGGTGGCTTTCTGTCATTTTCAGAGACAGCTTTTGGACAGAACACT-GAGACAAT--ATAACTATAAGTCC-AAACAAAGTAAGGTATGGAATTA--------------TAAATCAGTT--TCTAATCTAGATTA s canFam1.chr22 21606098 313 + 64236280 AGAAACAGCAG-AAAGGAGACCTTTCATTTAT-GATCGATAAAAGTCTACATAACAAACAACACTTTGCTCTCTTAGTAAGAAAGACTATTTTCTTCTCAGGAACCAATGCCTAACAAACAAGGCTGGAGGATAAAGATGTATTGTTCAGACCAATTATACTGAAGAGAAACATAAATAAAGGCTGTGGCTTTGTGTCAGTTTCAGACACATCTCTTGGACAAGAAACCTGAAACACTTAATAGCCATGAAGCCTCAACAAAGGAAAGTAGGACATTTTAAAAAATAGTATGTTAATCTGTTTTCCTT--TTATGTT- a score=-13129.0 s hg17.chr17_random 1428073 219 + 2618010 TTTATCTTGAACCAAAAGATTA--AGAATAAAT-----AAAGCAACTTAAAATTATAAG---TTCAATACACaaaataaatattttaattttaaaataGTCAAAAAGCAT-GAAGTGAAATAATTACATAATA-AAATT-GAAATTTT---------TATGTTTCTCTAA-----TTGCATAAAA----TAGACTATTCAATTGTATTTTTAAATTTTTCCATAACACTTG----------------------------TTTCTTTCTATAATACTAC- s panTro1.chr14_random 10261260 233 - 43166525 TTTATCTTGAACCAAAAGATTA--AGAATAAATAAATCAAAGCAACTTAAAATTATAAG---TTCAATACCCAAAATAAATATTTTCATTTTAAAATAGTCAAAAAGCAT-GAAGTGAAATAATTACATAATA-AAATT-GAAATTTTTCTAATACGTATGTTTCTCTAA-----TTGCATAAAATAGTTAGACTATTCAATTTTATTTTTAAATTTTTCCATAACACTTG--------------------------------TTTCTATTATACTAC- s mm5.chr14 81685778 207 + 117079080 TTTAGCTGGAATGAGGATATTT--AAGTTAGA------AAACAAAAGTGATATAATCAT---TTAAAT-----GATCAGATTTACTCATTTT-AAATGTTTGAAAAACTT----------TTGTTAAGT--TA-GAATCAGAAATATTTCTAT----AATGCATATCTTA-----CTGAATACAA----TTCTCAATTCCAATTTA--TTTAAAATATT--ATGACACTTAAT------------------------TTTCTTCTCCTATATTCCTGA- s rn3.chr15 72291971 187 + 109774626 TTTAGCTTGAATGAGGATATGT--AGGCTAAA------AAACAAAAGTGATATAATCA-----TAAATAT---GATTAGCTTTATTCATTTT-AAAAGTTTGAAAAGCTT-TTGCCAAAATAGC------------ATCAGGAATATTTCTAA--------------------------ATAAT-----CTTACTATTTCATTTT---TTTTAATTTT---ATGACACTTCTC------------------------TTTCCTCTTCTAGTGTCCAGA- s canFam1.chr22 21606411 255 + 64236280 CCTGTCTTGAATTTAAAGATTA--AGAATAAAC-----AAATAAAAGCAATGCCATAAA---CTCAA------AATGATATATGCTTTGATTGAAAAGATCAAAAAGCTTATAAGTGAAAGAACCAGCTAATGTGAATT-GGATTTTGCCTAATAACTGTATTTTTTGAA-----TTGCATAAATAAT-TTGACTAAGGCATTTTATTTTTTCATTTTCCCCTAACATACCTCACATTAGCATCCTACCTAAGATATTTTTCTTTTTTAAGATTTTAT- s danRer1.chr19 21779124 216 - 24317769 tTGATTCTGACCCCAAAATTTAACAAACTGACT-----TGATAAATATTCTATAATTTAGCTTTTAATATTCCAAT-----------ACATTAATAGATTCTGAGAAACA-ACAATGACCCAAC----------ACACT-GACCCATATGTAT----TACACATACCCAAATTACCCACATA-------TCACCTATATAAATATAGTACAAGGATATCCAAACACAGTGGTA------------------------CATGCTTCTTTATTGATCTTAC a score=91.0 s hg17.chr17_random 1428292 1 + 2618010 A s danRer1.chr19 21779340 1 - 24317769 A a score=-69.0 s hg17.chr17_random 1428292 1 + 2618010 A s panTro1.chr14_random 10261493 1 - 43166525 A s mm5.chr14 81685985 1 + 117079080 C s rn3.chr15 72292158 1 + 109774626 A a score=12870.0 s hg17.chr17_random 1428293 102 + 2618010 --TGAGATATTTGTTTCT---------TAAATCTGCTGTTGATTTTCTCTGTATCTCTACATCTCTATTCG---------TTATCCATCT-----------------AATCTTCATTTAGGCAGACATA-TTTTG-TCTGC s panTro1.chr14_random 10261494 102 - 43166525 --TGAGATATTTGTTTCT---------TACATATGCTGTTGATTTTCTCTGTATCTCTACATCTCTATTCA---------TTATCCACCT-----------------AATCTTCATTTAGGCAGACGTA-TTTTG-TCTGC s mm5.chr14 81685986 118 + 117079080 --TGAGGTACTCATATCT---------AAGGT-TACTGTTTGTAATATATATATATATATCTGTCCATCCAGCAATTTACTTATACACTTT----------GTAGCAAGCACTTATTCTAGTGGAAGTA-TATTACTCTGA s rn3.chr15 72292159 121 + 109774626 --TAAGGTACTTGTATCT---------AAGAA---CTGTTTGTTTTTCTTATACATCTG----TCCATTCA-TCATATATTTATTTACTTATATATTATGTATAACAAGCACTTATATGAGTGGAAGTA-TATTACTCTGA s canFam1.chr22 21606904 84 + 64236280 --TGAGATATGTGTTTCT---------TAAATCTGCTGTTTACTTTCTCTGTGT--------------------------CTATCTATCT-----------------AATCTTTATTTGAATAGAAGGA-T-TTG-TCTGT s danRer1.chr19 21779341 115 - 24317769 TTGGCTACATCTGTAGCCGCATACATGTAGTTCTGCTGGTCAATTTCCCATCACCTTTACATTTCCAATTG---------CTTTATTTCTG----------------AAATTCAAGTTAAGTGGAAAAAGTCTTG-AATGA a score=76.0 s hg17.chr17_random 1428395 17 + 2618010 ---TTTTTTCTGACAATATT s mm5.chr14 81686104 17 + 117079080 ---TTTTCTTTACTCATTTA s rn3.chr15 72292280 17 + 109774626 ---TGTTCGTTAACCATCTA s canFam1.chr22 21607000 17 + 64236280 ---TTTTTTTCCCCCACTTA s danRer1.chr19 21779456 17 - 24317769 GGTTATTCACTGGCATT--- a score=-4379.0 s hg17.chr17_random 1428412 101 + 2618010 --AGATGCT---ATATTAGTAGAACCTGGTGATTGATTCTGTGTTAGGCTTATGG-TAATTAGAAGGAATCAATG---GTGACATCTTAGCTTCTGGTGGTGT-GTGTTGT s mm5.chr14 81686121 100 + 117079080 --AGCTTCT---AGTTTATTTGGATTCTATACTTAATTATCTGTTA---CCATTG-AAAATTGGACATTTACATGTAAGTGATATCTCAACTCTCTGTGTTA--ATGTTAG s rn3.chr15 72292706 101 + 109774626 --GGATGCT---AGTTTATTTGGATTCTATACTAGATTATCTGTTA---CCATTGATGATTGGAACACAAACACTTAAGTGATATCACAACTCCTTTTGTTA--TTGTTAG s canFam1.chr22 21607024 88 + 64236280 --AGATTCT---ATGTTAACAGAATTTAGTGAT--------TGTTAGGCATATGA--GAAAGGAAGAAGTCAGCG---TTGACGTCTCAGTGCCTGGTGGCA-----TTGA s danRer1.chr19 21779473 99 - 24317769 AAAGGCTCTCCCAGACTGGCTCCATTTGCTTCTGGA-----TGTGAGAGACGTAG-------GGCTCAAACCACTTTTGTACATCCTCTGCCTTTTGCTGAAGAGTGTTGT a score=6286.0 s hg17.chr17_random 1428513 25 + 2618010 CATTTAGCATAACTTAGAATGCCAA s mm5.chr14 81686221 25 + 117079080 AATTTAGTATTACATAGCATGTTAA s rn3.chr15 72292807 25 + 109774626 AATATAGTATTTTATATCATGCTAA s canFam1.chr22 21607112 25 + 64236280 GATTTAGTGTGTCTTAGAATGCCAA a score=753.0 s hg17.chr17_random 1428538 2 + 2618010 AG s mm5.chr14 81686401 2 + 117079080 AA s rn3.chr15 72292832 2 + 109774626 AG s canFam1.chr22 21607137 2 + 64236280 AG a score=91.0 s hg17.chr17_random 1428540 1 + 2618010 A s canFam1.chr22 21607139 1 + 64236280 A a score=91.0 s hg17.chr17_random 1428540 1 + 2618010 A s rn3.chr15 72292989 1 + 109774626 A a score=91.0 s hg17.chr17_random 1428540 1 + 2618010 A s mm5.chr14 81686403 1 + 117079080 A a score=663.0 s hg17.chr17_random 1428541 2 + 2618010 AG s panTro1.chr14_random 10261742 2 - 43166525 AG s mm5.chr14 81686404 2 + 117079080 GG s rn3.chr15 72292991 2 + 109774626 GA s canFam1.chr22 21607140 2 + 64236280 Ag a score=27503.0 s hg17.chr17_random 1428543 237 + 2618010 GAGTAAGTTTTCTTGGTAAGACAATGACTTG-AGTTTAGGAAGCTTGTATCTCTTGTTCTTGTGGCTCATGTAAT---------TGTAAATGTCTAATACACAGTTTAAAAAA-GTTTTCTGGGTTTCAGAAAAAAAAAAACAAAGTCTGAGCTGGGCAATATTGGATGAAGTAAAGTAAGTTCAGATATTGAGATCT--GTGTGaaaat---------aaattactatattttaaaataaaCTGCAGTAATACATCAA s panTro1.chr14_random 10261744 237 - 43166525 GAGTAAGGTTTCTTGGCAAGA-AATGACTTG-CGCTTTGGAAGCTTGTATCTGTTGTTCTCGTGGCTCATCTACT---------TGTAAATGTCTAATACACTGTTTAAAAAAAGTTTTCTGGGTCTCAGAAAAAAAACCCCAAAGTCTGAGCTGGGCTGTATTGGATGAAGTAAAGTAAGTTCAGATATTGAGATTT--GTGTGaaaat---------aaattagtatattttaaaataaaGTATACTAATACATCAA s mm5.chr14 81686406 233 + 117079080 GGGTGAGTTTTCTTGAGAATGTGGTCATTAG-GAGTTTGG----TTTTACCTGTTTTGCTCATAGTTCTTGTAGTATTAATAACTATAAATAATTAATGTAAAACTGAGCAAA-CGACTATAGATTACAAGGAAGGAAAACAAA------AGCGAGGTATCTTTATATGAAAATGTTTATGTTCAGATTGGGAAATTTCAATTTG--------------AAATGAACACTTCTTAAAAGAAATGGTAGGTATAGAGCCA s rn3.chr15 72292993 224 + 109774626 AGATGCATTTTCTTGGCTATGTACTCATTAATAGTTTTGGAAATTTATACCTGTTTTGCTCATAG------TAGTATTAATAATTTGAAATGATTACTTTAAAACTGAGCAAC-----TCTAAATTACAAGAAAGGAAAAATA---------CAAGCTATCATTGTGTGAA-------------AACTGTTATGAACA--GTTTGGAAATTCCATTGTAAAATGAATACATCTTAAAATAAGTGGTAGGTATATAATAA a score=848.0 s hg17.chr17_random 1428780 4 + 2618010 AATA s panTro1.chr14_random 10261981 4 - 43166525 AATA s mm5.chr14 81686639 4 + 117079080 GATA a score=42151.0 s hg17.chr17_random 1428784 591 + 2618010 TTTGCCTAGGCTTCATTAGTCTAAATATTTGATCCATACCATGAAGGAATTGGTTGTGTTTTGTTTACAATTGTTTCTCTATTTTTGTATATAGGAACAAAATTGATAAATGCATGCTGAATAAATAAATGTGTTAGGAAATGAGTATCAATGGTTAGGAGTTATTTTGTTACCATTCAATCTTTAAACATATTTTGTTTTTCTAGATAGGATAGGAGACCTAACTCAGGTTAGCACATTCTCATATTCATTCATTGGGCATTTTATATTAAAGCACTGTGGGGtttttttgtttttttgtttttttttgtgaa--ggagtctcactcttgtcgcccaggctggagttcaatggc----acaatctcggctcactgcaa-----gctccacctcccaggttcacgccattctcctgcctcagcctcccaagtagctcagactacaggcacccaccaccacacctagctatttttttgtatttttagtagagacagggttttaccgtgttagacagaatggtctccatcgcctgacctcgtgatccgcccgccttggcctcccaaagtgctgggattacaggtgtgagccaccgtgcctggct s panTro1.chr14_random 10261985 578 - 43166525 TTTGCCTAGGGTTCATTAGTCTAAATATTTGATCCATACCATGAAGGAATTGATTGTGTCTTGTTTACAATTGTTTCTCTGTTTTTATAT-TAGGAACAAAATTGATAAATGCATGTTGAATAAATAAATGTGTTAGGAAATGAGTATCAATGCTTAGGAGTTATTTTGTTACCACTCAATCTTTAAACATATTTTGTTTTTCTAGATAGGA-----AACCTAACTCAGGTTAGCACATTCTCATATTCATTCATTGGGCATTTTATATTAAAGCA---------------ATCtttttttttttttttttcaaatggagtctcgctgt-gttgcacaggctggagtgcaatggctggcacgatctcagccaactgcaacctctgctcc--ccccggggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccagctagttttttgtatttttagtagagacggggtttcaccatgttagccagaatggtctcgatcgcctgacctcatgatccacctgcctcggcctcccaaagtgttgggattacaggcgtgagccaccgcgcccggct a score=33146.0 s hg17.chr17_random 1429375 199 + 2618010 ATTAAAGCAATCTTTACAAACTCTGGTAATTTATACAGGTTCTGATATATGGCTACCCAATGCTAGTCCAACCCAGGGCCAGAATTCACTGGCTGCTGCTGCATGTACTTGCTGAAACCAGATAAACTGCCTTTTT---ATTGAAAGCATTATAGAAATCAATTTGGGTTTATTATCACATATTTGAGGCTTTTTATCCGGG s panTro1.chr14_random 10262563 199 - 43166525 GTTAAAGCAATCTTTACAAGTTCTGATAATTTATACAAGTTCTGATATATGGCTACCCAATGCTAGTCCAACCCAGGGCCAGAATTCACTGGCTGCTGCTGCATGTACTTGCTGAAACCAGATAAACTGCCTTTTC---ATTGAAAGTATTATAGAAATCAATTTGGGTTTATTATCACATATTTGAGGCTTTTTATCTGTG s canFam1.chr22 21607654 196 + 64236280 GTTAAAGCAATCTTTATAGGTTCAGAAAATATTTAGTATTCCC----TGTGGCTACCTAATGCCAGTCTAGCCTAGTCTTAGAATTTATTAGCTGCTATTGCTTCTACTTGCTGAATCTAGA-GAACTGTTTTGTTATGATTGAAAACATTAAAAGAATGAA-TTAGATGTCTTGACAGATGTTTGAGGCTTTTTATTTAGG a score=1154.0 s hg17.chr17_random 1429574 47 + 2618010 CCAAAGCAAAaaaaacaaaaacaaaaacaaaaaaaaaTGGGGAAGGA s panTro1.chr14_random 10262762 36 - 43166525 CTATA---------ACAACAACAACAACAAAAAAAAC--GGGGAGGA a score=6804.0 s hg17.chr17_random 1429621 75 + 2618010 AGCATGGACAAATGGTAAATTTAAAGATTAAGCAAAAGGTATTTGTTTTAGTTTATTATG--AAGTCTTTCTGG--ACC s panTro1.chr14_random 10262798 77 - 43166525 AGCATGGACAAATGGTAAATTTAAAGATTAAGCAGAAGGTATTTGTTTTATTTTATTATG--AAGTCTTTCTGGGGACC s canFam1.chr22 21607871 70 + 64236280 AGCATGA--AAATGAGA----TGAAGGTTAATTAGTGGatatt--tttaaatttcttatattaaattcttttataaat- a score=83479.0 s hg17.chr17_random 1429696 617 + 2618010 TCAAATTA------------------AAATAAA--ATTTAATGTAAAACATTCGTTATCATATTAACAGTTCCCAGGCACGGAAACATTAATATACACACAAATCACAAACTAACTCAGAGATTACTCACTTAACTTTCATTGTATATATTATAAAGCAAGGacttcgcatgatcttagccaaaaggctgagaagcaatAAAGCAAGGACTTAAAGTAATAAATACATAGTTAATTTTGTATCTACCAGCTATATTTGTCTCTTCAACCAAGAATGCTAAGAAGGTAGTCATGTCAATTGTG-AAATCTACTGTGTGATCTGGCAATTTCCTCTTTAAGAATCGGACTTTAACAATCAATTTGTTTCAAAGAGGCCAGTAAAGATCCAGAGGTTCTAAACACAGAATATCGCACATACTAATTAAAATTTTCAAAGATTGCCTAATGCAATTGTCTTACATCTCGGTGAAGAGAACAGCAGTTTCCTTTGATTCAATTATCACATGATATTATTATTAGTGCTTTTCAGAATTGTTAACACTCTCTTCCTGATAGAGGAGGGCACATTTATTCATTTGAGGTATCTCTATGTAG-------------GCCATTACAAGAGAAACAGAATTCAAATGGTTGCCTGAAATTAT s panTro1.chr14_random 10262875 613 - 43166525 TCAAATTA------------------AAATAAA--ATTTAATGTAAAACATTTGTTATCATATTAG-AGTTCCCAGGTATGGAAACATTGATATACACACAAATCACGAACTAACTCAGAGATTACTCACTTAACTTTTATTGCATATATTATACAGCAAGGACTTCTCAtgatcttagccaaaaggccgagaagcaatAAAGCAAGGACTTAAAGTAATAAATGCATAGTTAATTTTATATCTACTATCTGTATTTCTCTCTTTG-CCAAGAATGCTAAGAAGGTAGTCATGTCAATTGTG-GAATCTACTGTGTGATCTGGCAATTTCCTCTTCAAGAATTGCACTTTAACAATCAATTCGTTTCAAAGAGGCCAGTAAAGATCCAG--GTTCTAAACACAGAATATTGCACATACTAACTAAAATTTTCAAAGATTGCCTAATGCAATTGTCTTAAATCTTGCTGAAGAGAACAACAGTTTCCTTTGATTCAATTATCACCTGAAATTATTAGTAGTGCTTTTCAGAATTGTTATCACTCTCTTCCTGACAGAGGAGGGCACATTTATTCATTTGAGGTATCTCTATGCAG-------------GCCATTACAAGAGAAATAGAATTCAAATGGTTGCCTTAAATTCT s canFam1.chr22 21608102 581 + 64236280 TCAaatgagtgaatgaatgaatgaatgaatgaatgaTTTTAGATATAACATTTGCTAT-AGGTAAG-GATTCCCAGTCATGGAAACATTATTATACATGTAAGTCATGAACGAACTCAGGGAACACTTGCTTATCTCTCCTTG---------------------------------------AAAGTTCGCAAAGGAA----------ACCCACCATAGT-------TATTTAATTTTATATTTGTAATCTATCTTTGAATCTTCTGCCAGTATCGCTAAGAAAGCAACCCTACCAGTTGCGTAGATCTGTTTCGTGATAT----ATTTCTACCTTAATAAGTGGACTTTAG-GATGAATTCCTTTCACATAGATGAATAAACATCCAGCAGTTCTAACTACAGAATATTGTGTGTGA-----AGGATTTTCAAAACTTTTCTAATCCAATTTTTAAAAATCTAGGTGAAAAGAACAGTAGTTTCCTTTG-TTGAATAATAACCTGATATTATTTATAGGGCTTTTAAGGACTTCTATCACTATCCTCCTGTTGGAAGAGAGTATATTTATTCATTTGTGGTTTGATTACATAGAAGAATATGTAAAACCATTATAAAAG-AGCAGAAATTAAATGGTTTCCTCAAATTTt a score=746.0 s hg17.chr17_random 1430313 8 + 2618010 TTACAAAG s panTro1.chr14_random 10263488 8 - 43166525 TTACAAAG a score=47701.0 s hg17.chr17_random 1430321 264 + 2618010 AGACAAAATCAAATTAAATTAGGATAAGTGCACTTGAATCAAGACAAGGTA---TAAATAAAATACCTAAAATAATAATACCTAGACTCAAAATTTAAATCATGGCATCATGAGTAGGTAATACAGTTCTATGTTTAGCACATCAATAAGTTATTACCATATTTAAGAGCTCAGATGGGTGGAAAGATGTA-------ACTGTGCTTAACTATCAATTTAGAATTCAAAGTTACATGTAATTAACGACATCCTTTAACTTTGGTAGCATTACTA s panTro1.chr14_random 10263496 271 - 43166525 AGACAAAATCAAATTGAATTAGGATAAGTGCACTTGAATCAAGACAAGGTA---TAAATAAAATACCTAAAATAATAATACCTAGACTCAAAATTTAAATCATGGCATCATGAGTAGGTAATACAGTTCTATGTTTAGCACATCAATAAGTTATTACCATATTTAGGAGCTCAGATGGGTGGAAAGATGTAATGTAACACTGCGCTTAACTATCAATCTAGAATTCAAAGTTACACGTAATTAACTACATCCTTTGACTTTGGTGGCATTATTA s canFam1.chr22 21608902 271 + 64236280 AGATAAAACTAAGTTCAGTATGGATAAATGCATTTAAATTAGGAAATGAAAAGTTTAATAAAATTTCTTAG--GATAATATCTGGGTTCACAATTGAAATCCCGGCACTATGAGTCAATAACATACTTCTATGTTTAGCAGACCCATAAATT-TTACTGTATATTGGGGCTTAAATGAGCAGAAAGGTATAGTGTAACACTGTGCTGAACTACCAATCCAGAATTCAAAGTTATATATAATTAACTACATCCTTTGGCCTTAGAGATATTACTA a score=2038.0 s hg17.chr17_random 1430585 22 + 2618010 AATTTCATAAACCATTTCTTAA s panTro1.chr14_random 10263767 22 - 43166525 AATTTCATAAACCATTTCTTAA a score=48509.0 s hg17.chr17_random 1430607 311 + 2618010 TATTTTAAAAATTGTAT----TAGTATCATATTAATAG-----GTAAACATGTAATACCCATCAATTTGTAGG--TACCCTTATAGCACTTAATTTCATATGTCAAAATCTTGTAAACTTGGTTGTAATGACTGCAGTACAAAAGTAATTAAGTGTACCAGACAGCA---ACACCTATCAGGTAGTCAAAGCATTTCCCATTGTATAGTGAGATGAAGCAGAAAGAGTGTATCTTAAGACAGTGTGCAGAGTAGCCCCATATGCAGAGGAAG-CAGTGAGGCGAATTTTTTTTCTTCTTTAGAGAAGTCCCAGGAAATGGAAATTA s panTro1.chr14_random 10263789 308 - 43166525 TATTTTTAAAATTGTAT----TAGTATCATATTAATAT-----GTAAACATGTAATACCCATCAATTTGTAGG--TACCCTTATAGCACTTAATTTCATATGTCGAAATCTTGTAAACTTGGTTGTAATGACTGCAGTGCAAAAGTAATTAAGTGTACCAGACAGCG---ACATCTAACAGGTAGTCAAAGCATTTCCCATTGTATAATGAGATGAAGCAGAAAGGGTGTATCTTAAGACAGTGTGCAGAGCAGCCCCATATGCAGAGGAAG-CAGTGAGGTGAA---ATTTTCTTCTTTAGAGAAGTCCCAGGAAATGGAAATTT s canFam1.chr7 66999761 319 - 83037113 TGCTTTCAAAATTTTATCACCCAGTAACATATCAGTAACACACATAAAGATGTAATATTCACTGATTTGTAGAATTCCCCTTATGACACTTAATTTTGTATGTAGGAGTCTGCTAACCTTGGTTGTATTG-CTGCCATGCAAAGGTCAGGCAATGTACCAGTCAGTGAACACACATACCCAGTTGTCAAAGCGTGGTCATTGGTACAGTGAGAAGGAACAGAAAGGATACATCTTAAA--AGAGCACAAAGCAATCACCTTGACAGAGGAAGTTAGGGAGGCAAA----TTTGTGTCTCTAGAGAAATCCCAGGATATGGAAAATG a score=1399.0 s hg17.chr17_random 1430918 13 + 2618010 -----AGCAAGCTTCAGC s panTro1.chr14_random 10264097 13 - 43166525 -----AGCAAGCTTCAGC s rn3.chr13 71106002 13 + 111348958 -----AGAAAAATGTAAA s canFam1.chr7 67000080 18 - 83037113 AGGAAGGCATCCCTCAGC a score=73213.0 s hg17.chr17_random 1430931 274 + 2618010 CTATTATGTAGTGCATTTTCCATAAATAGAGAATAAAACC----TGCCTTAAAATTCTTCAAGCCCC---AGTGGAGACAG-TGAAGTAAAATGATACAAGTTTTGCAGCAGATTT-CAGGGTCCCAGGG---AAGTGGAGTTGACTGTCAGTG--ACGAAGCT--GTTTTATTTAAGTAGGAAAAATGAATCATTATCACCTTTGACTAGAAAAATAACATTATCACCCTCACACATGGAGCACTGAAAACCAACATTTCACAATTCCACTTGTAAGGGATTCACTAAA------ s panTro1.chr14_random 10264110 278 - 43166525 CTACTATGTAGTGCATTTTCCATAAATGGAGACTAAAACCTTATTGCTTTAACATGCTTCAAGCCCC---AGTGGAGACAA-TGAAGTAAAATGATACAAGTTTTGCAGCAGATTT-CAGGGTCCCAGGG---AAGTGGAGTTGACTGTCAGGG--ACAAAGCT--GTTTTATTTAAGTAGGAAAAATGAATCATTATCACATTTGACTAGAAAAATAACATTATCACCCTCACACATGGAGCACTGAAAACCACCATTTCACAATTCCACTTGTAAGGGATTTACTAAA------ s mm5.chr1 156047641 226 + 195203927 CTCCCATTTAGTATAGTCTCCATGAGTAGAGAATGACTCTAAACAGTTGTAACCAGTTCCATAGCCT---AAAGAAGA----TAAAGCAGAATGAC-------------CAGGTTCACAGGG--CTAGGGTTAGAGTGCACATGATCCTGAGAGA-ATTAAGCCAAGTTCTACTTAAGTA-GAAAAATTAATTACT----------------------------------------ACGGGACGCTGAAAACCAACATTTCACAATTGAACTTGGAAGAGACTCACTAAA------ s rn3.chr13 71106015 225 + 111348958 CTCCCATTTAGTATAGTTTCCATGAGTGGAGAGTGACTCTTAA-AATTGTAACCAGTTCCACACCCT---GAAGAAGA----TCAAGCAGAATGATC------------AGGGTTA-CAGGA--TCAGGATTAAAGTGGACATGATCCTGAGAGA-CTTGAGCCAAGTTTTACTTAAGTA-GAAAAATGAATTACT----------------------------------------ATGGGACACTAAAAACCAACATTTCACAATTGAACTTGGAAGAAGTTCACTAAA------ s canFam1.chr7 67000098 255 - 83037113 ATACTGCCTGGTGCATTCTCTGTAAAGGAAGAATAAAACT--ATTGCTTTAACTTGTTTAAAAGCCCTCATATGGAGATTGTTAAAGGAAAATAAT--GAGTCTTTCTACAGGTTT-CAGAGTCACAGGG---AAATACAAATAGCTACCAGTGATACGAGTCTGTGTTTTACTTAAGTG-GCAAAATGAATCATAAGCTCCTAT-------------------------------ATGGGGCACTGAAAACGAACATTTCACAATTAAACTT-CAAGGGATTTGCTGAAAGTAAA a score=6350.0 s hg17.chr17_random 1431205 34 + 2618010 TGT-----CTTTTGTGTCACATGAAGCTCACAGGTTTTA s panTro1.chr14_random 10264388 34 - 43166525 TGT-----CTTTTGTGTCACATGAAGCACACAGGTTTTA s mm5.chr1 156047867 36 + 195203927 AATAATTGAGTTTGTGCCAGTTGAGACACA---GTCTAT s canFam1.chr7 67000353 34 - 83037113 TGT-----CTTTTGTGTCTCCTGAAGCACATGGGTCTTC a score=23229.0 s hg17.chr17_random 1431239 132 + 2618010 ATTAAAT-CCTTGTAGTAGAAGGTACTATCACGGGTACTTGTTTTTTTGGACACACTCATGGAAT---TTTTTTTCTGTAGCTACAGAAAGCCTTCACTTA-TCCCATTTTCCAGCAAGATGAGGCCTTGCCTCACT s panTro1.chr14_random 10264422 133 - 43166525 ATTAACT-CCTTGTTGTAGAAGGTACTATCACAGGTATTTGTTTTTTTGGACACACTCATGGAAT--GTTTCTTTCTGTAGCTACAGAAAGCCTTCAGTTA-TCCCATTTTCCAGCAAGATGAGGCCTTGCCTCACT s mm5.chr1 156047903 113 + 195203927 ATT-------TTGTGGGA-AAGATACCATCA-----AATACCTTTTTCGG--ACTGTTAAGGATCAGGTTTTTT------GTTATAAAAAGTCTCCAA-CA-GCACATTTT-AATCACTATGAGGCATAGCCTCACT s rn3.chr13 71106269 97 + 111348958 ATTCTATGCTTTGTGGGG-AGAATACCATCA-----AATACCTTTTGTGGACA---------------------------GTTAC-----GTCTCCCAACA-GCACATTTT-GATCACTATGAGGCATAGCCTCAAT s canFam1.chr7 67000387 133 - 83037113 ATCAGAACCTTTTTTACAAAAGATACCATCAGAGGTAAC-CTTTCTTTGGACAAGATTATGGAAT---GGTTTTCCTACAGCTGCAAAAAACTCTCCAGCATTCCCATTTTCCATCAGGATGAGGCTCTACCTCACT a score=6053.0 s hg17.chr17_random 1431371 33 + 2618010 TTCACCATTCAGTCCA-GAGGTTTCTAATGAACA s panTro1.chr14_random 10264555 33 - 43166525 TTCACCATGCAGTCCA-GAGATTTCTAATGAACA s mm5.chr1 156048153 34 + 195203927 TCTGCCGCACATTCTGTGACGTTCCACACAAAAG s canFam1.chr7 67000520 33 - 83037113 TCCATTAAGCAATCCA-GAGGCTCCTAATGTACA a score=37163.0 s hg17.chr17_random 1431404 86 + 2618010 CATTTTTAAATACAGATTGGACACTATTCAAAA-GACTGACCTGCCTTCGAAACAGTGGCTTCCAGATCTCCCAGATATGTGACTGT-------- s panTro1.chr14_random 10264588 86 - 43166525 CATTTTTAAATATAGATGGGACACTATTCAAAA-GATTGACCTGCCTTTGAAACAATGGCTTCCAGATCTCCCAGATATGTGACTAT-------- s mm5.chr1 156048188 87 + 195203927 TGCTTCCTAATATGGGCTTGTCACTGCTCAGAACGATCTGCGTGATTCTGAAACATCAGCCTCCAGATCGCTCAGATACCAGACCAT-------- s rn3.chr13 71106538 87 + 111348958 TGCTTCCTAATATGGGCTTGTCACTGCTCAAAAAGATTTGCATGATTCTGAAACGTCAGCCTCCAGATCGCTCAGATACCAGACCAT-------- s canFam1.chr7 67000553 94 - 83037113 CATTTCCTCATGTGGATTGGACACTGCTCAAAA-GGTTGACCTGCTTCGGGAATAGTGGCCTCAAGATCTCTCAGCTACCCCACCAAGTGACTCC a score=10157.0 s hg17.chr17_random 1431490 41 + 2618010 TTATGAAGGTGTGTCAAGAACCTC--CATGTTT-CCCCACTTCT s panTro1.chr14_random 10264674 43 - 43166525 TTATGAAGATGTGTCAAGAACCTCCACATGTTT-TCCCACTTCT s rn3.chr13 71106631 38 + 111348958 TTGTG-AGTTGAGGGAAAAAA-----CATGTTTGTCCCACTTCT s canFam1.chr7 67000647 42 - 83037113 TTGTGAGGATGTGTCAAGAACCTC--CGTGTTTATATCACTTCT a score=1347.0 s hg17.chr17_random 1431531 7 + 2618010 TCCTTGC s panTro1.chr14_random 10264717 7 - 43166525 TCCTTGC s canFam1.chr7 67000689 7 - 83037113 TCCTGGT a score=68363.0 s hg17.chr17_random 1431538 469 + 2618010 AGTTCAGAGAC---ATTTTATTCTCTATCCAC-----TAATTATGCATATCTTAATTACCTTGTAGGCATTTTGTGAAATGAATAAAATCACCCCTGATTTTGTTAATCAAATCACTTTTTGTCTTTAGACAAAAGT--------------TGTGTCCCAGTGAAGACATTTTATGCAGCTACCAAGTACTATATGCTGGAGGCT-------AAGTATAAAAACTCTCATTCTCTAATCTTGAGGAGCTAATGATCTTGTATCTGGGCATGGGTGAGTGACTAAAAGAATGAACGAAATTCTGAAAAATTGAGTAATGAAGTGTATACATCATGGACC-CGAAGAAAGCACTAGTTTAATCTCCTTGA--------------------TAGGATTGAGAAAGTTTTCATATATAAGGTAGAATTTTAGCTGGAGTTTGGAAGATTGGT-CAAATTTAGTAA-AAAAAGAAGAGGTAAATGGTTGTAATTTAATAAAATAGGATGAGCTAGATTTGTCTGTT s panTro1.chr14_random 10264724 478 - 43166525 AGCTCAGAGAC---ATTTTATTCTCTATCCACTAGTTTAATTATGCATATCTTAATTACCTTGTAGGCATTTTGTGAAATGAATAAAATCACTCCTAATTTTGTTAATCAAATCACTGTTTGTCTTTAGACAAAAGT--------------TGTGTCCCAAAGAAGACATTTTATGCAGCTACCAAGTATTATACGCTGGAGGCTGAGTTCAAAGTATAAAAACTCTCATTCTCTAATCTTGAGGAGCTAATGATCTTGTATCTAGGCATGGGTGAGTTACTAAAAGAATGAACACAATTCTGAAAAATTGAGTAATGAAGTATATACATCATGGACC-CGAAGAAAGCACTAGTTTGATCTGCTTGA--------------------TAGGATTGAGAAAGTTTTAATGTATAAGGTAGAATTTTAGCTGCAGTTTGGAAGATTAGT-CAAATTTGATAA-CAAAAGAAGAGGTAAATG---GTAATTTAACAGAATAGGATGAGCCAGATTTGTCTGTT s canFam1.chr22 21609173 499 + 64236280 AGTTCAAAAACTTAATTTCTTTCTCTACACAATAGTTTAATCACAACTATTCTAATTACCTTGCAGGGATTTTGTGAGATGATTAACATTATTGCTGAT--------TCAAGGTAA-----------AGACAAAAGTGAGATTAAATATTCCGTGTTTTAGCAAAGTTATTTTATGTA-CTATCAAGTATCATATGCTGGAAGGT-GGTTCAAAGTTAAACAAGGCCCATTCTCTGAACTTAAAGAGCTAGTTATCTTATTTTGTGGGGTGAG-GAGTGACTAGAAGAACAAAAGGAATCCGCCCAAAGAAACCAATGAGATGTATACACCAAGAACCTCAAAAAAGGGAGTTGTTTAATCTGCTTGAGGAAATTCATTTGAGGGAATTAAGGTGAAGAAAGTTTTTGTGTTTAAGGTAGAGTTTGAACTAGACTCTGAAAGATTAGTAAAAATTCAATAATCAAGAGGTGAGGTAGATGGTGGTAGTTTAATGAAACATGATGAACCAAATAGTTTTACt a score=100.0 s hg17.chr17_random 1432007 1 + 2618010 G s panTro1.chr14_random 10265202 1 - 43166525 G a score=4489.0 s hg17.chr17_random 1432008 37 + 2618010 TTTTGGTATGCATAG-ATACAGTTTAAAATCGCATGAA s panTro1.chr14_random 10265203 37 - 43166525 GTTTGGTATGCAGAG-ATACAGTTTAAAATCGCATGAA s canFam1.chr22 21609850 38 + 64236280 TTTTTCTATGCAGTGAATATGGCAGACGATAACATGAA a score=6128.0 s hg17.chr17_random 1432045 164 + 2618010 AACCATGCTGATATAATGAAACTTTTTCTGTAGGCAATGTAAGATTATGTAGAAACATT--TATTAGCTTTCTCATTCAATGCTAACAGGCTAGGGGTGACAGAGGAAAAGACA-AACCAAAAGAGACAA-AGGGGATTGTTATTCTCAAAGCAAAGTTCTTGT--AATT s canFam1.chr22 21609888 170 + 64236280 TGCCAAGTTGGCATGATGGAACTTTTTCTATAGGCAATATAAGATTCTATCGTAATAGTATTTTTAACTTTGTCACAGAACATTAATGGGCTGGAAGTAACAGAGTAAAAGAAACAAACAAAAGAAACAATAGGTTGTCATAATTCTTGCTGCAAAGTTCTCATTCAATT a score=80807.0 s hg17.chr17_random 1432209 555 + 2618010 GTAAT-------TTTTGTACTTCTAACAATGTTTTCATGTCCTCTAAAT------TAAGAAACCTAATATGTTGTACAACTGCTACAAATTGTGTTCATTAGGAAAACCTACAATTCATTGTGGTTTAATGTGTTTTGTTTTATAATTGTTGCtaaaataa-----ctttttatatataaaagaa-acttttttatattaaGAAATATCTGTCTAGTCATATTAGGAagaataacaaaatg-----gaagatagattttggttcagg-aaaactgggcacacttgggtttca----ctctgaactattacttctacttgccatgtgaccatgttcaaattatttaggcattttaagtctt------ctttttctcaagtccaaaactggtttaa-aatttttatctcagatgttgttaaaa----attaaatgagataatgtatgtaaaatgtttggaGAAAA-TA-CTACTTATTAAACT-TTGTTGCGATTCATGAGCTCATGAAAAT---GTCTTTAAGATGGAGGGTGACTATAATTCTCATATTTAGCATTTTATATATATT-----------GCAATTGTATTTTCCGGCGTTAGGAGAAACTAAA s panTro1.chr14_random 10265403 558 - 43166525 GTAAT-------TTTTGTACTTCTAACAATGTTTTCATGTCCTTTAAAT------TAAGAAACCTATTGTGTTGTACAACTGCTACAAATTGTATTCATTAGGAAAACCTACAATTCGTTGTGGTTTAATGTGTTTTGTTTTATAATTGTTGCtaaaataaaataactttttacatataaaagaa-a-ttttttatattaataaatatCTGTCTAGTCATATTAGGAAGAATAACAAAATG-----AAAGATAGATTTTGGTTCAGG-AAAACTGggcacacctgggtttcaatacc----aactattacttccacttgccatgtgaccatgttcaaattatttaggcattttaagtctt------ctttttctcaagtccaaaactggtttaa-aatttttatctcagatgttgttaaaa----cttaaatgacataatgtaagtaaagtgtttggAAAAAAATA-CTACTTATTAAACT-TTGTTGCAATTCATGAGCTCATGAAAAT---ATCTTTAATATAGAGGGTGACTATCATTCTTGTATTTAGCATT--ATATATATT-----------GCAATTTTATTTCCCAGCTTTAGGAGAAACTAAA s canFam1.chr22 21610058 592 + 64236280 GCGATTACTTTCTTCTTTGCTTCCTAAAATTCCTTCACGTCCTCTAAATCTAAACCCAGAAACATAATGTGTAATGTAACTGTTACACATTGTATGTGTTATTAAAATCTATAATTAATTGAAGTTTAATGAGTTTTGTTTTCTAATTATTGTTTAAGGaa-------------atataaaagaatataattatatattaaaGAGAATATGGGAAAGCATATTAGGATGAGTCATAAAACATAGATAAACATGGGTTTTCATTTGGGCAAagctgagcatatctgggttttaattcc----aactatggtttccacttgccatgtcaccttgtgccaatccctcaggtgtttt-agtcttttgttgttttttctcaaatgtagaattggtttcataaaatctatcagaggtattggtaaaaagagattaaataagacattccatgtaaagtgtttggggtaaaatacctTTTTATTAAATTATCATTGTGATTCATCAGCCCATGAAAATATCATCTGTTATATGGAAGGTGATTGTAAATCCCTCTTTCAGTGTT--CTATATAGTGGAATTACAAGGCAGTTGTATTTCCCAGTTTCAGTAAATACCAAA a score=10780.0 s hg17.chr17_random 1432764 145 + 2618010 GCAGACTAatatatattgaatttcatatatatatatgtggaatatatagatagattgatt----tccatatatgtgtgtatatatagagaaagagacagagag----caagagagacaatgacggagagacagaaaaacaaaaa-gTCTATGAC s panTro1.chr14_random 10265961 152 - 43166525 GCATACTAATATATATTGAATTTCATATATATAT--GTGGAATATATAAATAGATTGATTGATTTCCATATATGTGTGTATATATagagaaagagacagagagagagcaagagagaaaatgacagagagacagaAAAACAAAAAAGTCTATGAC a score=12146.0 s hg17.chr17_random 1432909 135 + 2618010 CTGAATTCTGTTATAATTGGTATAGAGTACAAAAGACTTAAGCAATTGTACATTACTATTTATTTACTTCCCCT---AAGAAAAATTAAATAAAAAAATCATACTCACTTTAAGATCTTATACTTCAATTTTAACAAT s panTro1.chr14_random 10266113 134 - 43166525 CTGAATTCTGCTATAATTGGTATAGAATACAAAAGACTTAAGCAATTGTACATTACTGTTTC----CTTCTCCTCACAAGaaaaattaaattaaaaaattataCTCACTTTAAGATCTTATAGTTCAATTTTAACAAT s danRer1.chr19 21783640 129 - 24317769 CTAAATTA-ATTATAAAGGTTATAACAGGTAAAAAAAGCAAAGGAATTTGCATTGTTGTTTA----TTTCCTACCTGAAATGACGGCGAGCGCAACAATTACAGCCAC----AAACTTCATGATTGTATTTGGACAGT a score=1282.0 s hg17.chr17_random 1433044 22 + 2618010 TTTTTTCCTTTACCTGAGGTTA s panTro1.chr14_random 10266247 21 - 43166525 TTTTT-CCTTTACTTGAAGTTA a score=80472.0 s hg17.chr17_random 1433066 491 + 2618010 TCATCTTTGAAATTCAATATTGGGGCCCCTGTTGTCATAtttaaaactttggcaacaggcccacagactttttctcaaccttaatttattttataatcttcgttgaaaacttctagtgaatgatgcatccaataccatacctctgttcttgaacttcttgtttctcataactattcctcgccatcatttcagatacctattccagggacatatcttttttatacctataattattttagctggaaaatcaatcatgcaaatattcaattccttaactcctttactttccaccttacagcttatttgttcaaatactccta--ctctgattttatcagaagcctgaatttattaagccataggttatccccaatttcaaaaatcctc----ttcttagtatgattcttttttcagcttatattccatggctcacagttcaataagattttttacattattctaaaggcccatgcatttttttctttccattatgctaa s panTro1.chr14_random 10266268 489 - 43166525 TCATCTTTGAAATTCAATATTGGGGCCCCTGTTGTCATATTTAAAACTTTGGCAACAGGCCCACAGACTTTTTCTCAACCTTAATTTATTTTATAATCTTTGTTGAAA-CTTCTAGTGAATGACGCATCCAATTACATACCTCTGTTCTTGAACCTCTTGTTTCTAATAACTGTACCTCACCATCATTTCAGATACCTATTCCAGGGGCATATCTTTTTTATACCTATCATTATTTTAGCTGGAAAATCAATCATGCAAATATTCAATTCCTTAACTCCTTTACTTTCCACCTTACAGCTTATTTGTTCAAATACTCCTA--CTCTGATTTTATCAGAAGCCTTAATTTATTAAGCCATAGGTTATCCCCAATTTCAAAAATCCTC----TTCTTAGTATGATTCTTTTTTCAGCTTATATTCCATGGCTTATAATTCAATAAGACTTTTTACATTATTCTAAAGGCCCATGC-TTTATTTCTTTCCATTATACTAA s canFam1.chr22 21612534 462 + 64236280 TTATCTTTGAAGCCCACAATCAGTACCCC---TCAAATATTTAAAAATGTGGA-----------------Cctctgtatcccaatttctatgattattcttgttgacaacttttaataaattatacatttactactgtatgtcagttcttta---tcttgtttctagtgactactcctcctcatgacttcagacacccagtccatgggtatatatt--------ctatagctcttttagctggaaaatcaatcatgcaaatattc-attccacaaccaccccacatctccccttacagctaatttgttcagctactcctactctctgattttatcagaagccctaattcattaaactttatactatctcccatttcaaaaattttcttttttcttactgta--ccttttttccagttatattccatgcctcatattttaataagattcttt-cattattctaaagtcacatacttttttccttttccattagactaa a score=47599.0 s hg17.chr17_random 1433557 210 + 2618010 tctgaagaaa-AAGCTATCTGATTTCTGTCTACATAAAATATCAGGACACATTATTCCAACTACAAAATGATCATCCCAAAATTGAAATAATCCCTCATCACTTCAATTATAGGCAAGATATCTGGTCAACTAATCTTCATTCTAT----TTCAAATCTTTCAAAGATTGTTCATACCCTTCAAAATCTATTTCTATCTTTTCTATTAGACATGT s panTro1.chrUn_random 27482481 210 + 240967748 TCTGAAGAAA-AAGCTATCTGATTTCTGTCTACATATAATATCAGGACACATTATTCCAACTACAAAATGATCATCCCAAAATTGAAATAATCCCTCATCACTTCAATTATAGACAACATATCTGGTCAACTAATCTTCATTCCAT----TTCAAATCTTTCAAAGATTGTTCATACACTTCAAAATCTATTTCTATCTTTTCTATTAGACATGT s canFam1.chr22 21612996 215 + 64236280 tctggagaactaAGTTATCTGATTTCTGTCTACATAAAATATCAGAACATATTATTCCCAGTATGAAACGATCATCATAAAATTGAAATAATCCCTCATCACCTCAATTCTATGCAAGATATCTGGTCAATTAATCTTCATCCTATTTCATTCAACTCTTTCAAAAATTGTTCATGCACTTCAAAATCTATTTCCATATTTTCTATTAGATACAT a score=20699.0 s hg17.chr17_random 1433767 119 + 2618010 AGTCATTTTCTCTGAATAT----------------------------CAAATTTATATACATACTTTTA---CATTTGGATGCAATCTG-----TTCTGCTATAATAAAGTAGCTGTTTCTTCTGCT---------------ATCTGATC-TTtgtattgaattacatatt s panTro1.chrUn_random 27482691 119 + 240967748 AGTCATTTTCTCTGAATAT----------------------------CGAATTTATATACATAATTTTA---CATTTGGATGCAATCTG-----TTCTGCTATAATAAAGTAGCTGTTTCTTCTGCT---------------ATCTGATC-TTTGTATTGAATTACATATT s mm5.chr6 24877160 140 + 149721531 AGTCATTTTCTCTATATTA----------------------------CAAACACACACACACACCTTTA---AATTTGGGTGTAATCTGTTTTATTCTTTTATTTTTAGAGATCAGTTCTTTATGCTCAATATCTGAATCCAATCTGGTCTTTTATTTCAAGTTTCATACT s canFam1.chr22 21613211 142 + 64236280 ATTCATTGCCTTCCAAAATcacacacacacacacacacacacacacacacacacacacacacacTTTTACATCATTTGGATGTAGTGTA-----TCCTA-TATAACAAAGTGGCTGTTTTT----CT---------------ATATAATT-TTTGTAGTGGAATACAT--- a score=41634.0 s hg17.chr17_random 1433886 237 + 2618010 ttcttgtctctcaagaaaatgattctctcaattctctcgtctctctcTGTCCTTCTTTCCACCCTATTTATTTTCTTCCTTTGAAGCTTCCTGAGACATACAATCCTGTTTTACCTTCTATTTCCCCAGCATATAATAATGCTTATCAGTTACAAGTA---ATATACGCTTTTATTTAGTAATAAATGCCAATATAAATAATTTCAAAGAAGATACTACACTGCTATGAAGTAGGAAAGT s panTro1.chrUn_random 27482810 233 + 240967748 TTCTTGTCTCTCAAGAAAATGATTCTCTCAATTCTCTCGTCTCTCTCTGTCCTTCTTTCCACCC----TATTTTCTTCCTTTGAAGCTTCCTGAGACATACAATCCTGTTTTACCTTCTACTTCCCCAGCATATAATAATGCTTATCAGTTACAAGTA---ATATACGCTTTTATTTAGTAATAAATGCCAATATAAATAATTTCAAAGAAAATACTACACTGCTATGAAGTAGGAAAGT s canFam1.chr22 21613353 236 + 64236280 TTCTTCTCTCTCAGGAAAATTATTCTATCAATT-TCTCTTC-CTCTCTTTCTCTCTTTCTCCCCTATGTAGTTTCTTCCTTGGAAGCTTCCTGAGAAATACTTTCCTATTTTAGTTTGTACATTCCCAATATATAAGAA-ATATACTAGTTACAAGTAGATACATGCTCTTTTATTTAG-GATAGATTGCTTTATAAATTATTTCACAGAAGTTAATTAGCTGCTATAAATTAGGAAGCT a score=13698.0 s hg17.chr17_random 1434123 113 + 2618010 TTAATTGAATGTTAATTCTG------------------CCTTTCAAGAGACTCATGTATGTGTTCATTAAGCATCAATTATT-GTGAACATTACATAGATTTAGGATTTCTTTAAGAATTCTATTTT--AAAAt s panTro1.chrUn_random 27483043 109 + 240967748 TTAATTGAATGTTAATTCTG------------------CCTTTCAAGAGACTCATGTATGTGTTCATCAAGCATCAATTATT-GTGAACATTACATAGATTTAGGA----TTTAAGAATTCTATTTT--AAAAt s canFam1.chr22 21613589 119 + 64236280 TTAATTGTATGTTAATTCTAAGTGGTCAAATAATGATCCCTTTCAAGAGATTTATGT---TATTCTTTGCACACCA---CTT-GTGAATTTTATCT--ATGTATAACTTTTTTTGGAATTTTCtttt------t s danRer1.chr19 21786098 116 - 24317769 TTAACTGAAAAGTAGAATCG------------------TCGTTTAAAAAAACTAGTTAAAATCGTTTTAAGAATCTAATGTTAGTTTACATTACATTTTCTTAAGCTTGTTTTAAGAATATTCTTATTGAAAAC a score=87291.0 s hg17.chr17_random 1434236 554 + 2618010 tgttattgtggttaaatacatataaaataaaattttctattttaccttcttctcaatgcataattcagaagcatgagttgcattcacaatgttgtgaaaccataatcattacctatttttataacttgttcatcacc-caaatagaacttcataa-caaacaataactttccattctctcttccctc-agcccctgagaacctctaatc-----tctttctctataattttacttgttctagatattttatacaagtgt-gtcagaaaatatttgcccttttatgtctggctttcttcatttggtataatgttttctaggttatacctgttatggca-atacatcagaacttcattc--cattttctggctgaataatattctactatatgtatacatcaccttttgtccattcattcatttgttgatgaacacctggattgttttcatcttttggctc-tgtgaataatgccacaataagcagtgacatacaggtatgtgaaactttgtttccagttttggggggtatataacaaagtctaaaattgtttgggttatgtggtaatt s panTro1.chrUn_random 27483152 558 + 240967748 tgttattgtggttaaatacatataaaataaaattttctattttaccttcttctcaatgcataattcagaagcatgagttgcattcacaatgttgtgaaaccataatcattacctatttttataactttttcatcacc-caaatagaacttcataa-caaacaataactttccattctctcttccctc-agcccctgagaacctctaatct-ctttctttctctataattttacttgttctagatattttatacaagtgt-gtcagaaaatatttgcccttttatgtctggcttttttcatttggtataatgttttctaggttatacctgttatggca-atacatcagaacttcattc--cattttctggctgaataatattctactatatgtatacatcaccttttgtccattcattcatttgttgatgaacacctggattgttttcatcttttggctc-tgtgaataatgccacaataagcggtgacatacaggtatgtgaaactttgtttccagttttgggggatatataacaaagtctaaaattgtttgggttatgtggtaatt s canFam1.chr22 21613708 534 + 64236280 tattttttgtgctaaatgtatgtcctatagaatttgccatttgaaccatttttaagtgtgtaattc-gaggcattaattacattcacaattttgtgaaatca--------------ttccaaagcttttaaatcaccacaaacataa----acaattaaacaataattctcccttcttccctctcccgagcccctggaaacctctcatctactttctgtctcattgaatgtaattgttctagatatttcatacacatacaatcatacgctatttgtctattt-tccctgaattgtttcact-----taatgttttcaaagtt-catctgttatgtagcatgcattagaacttcattctatattttatggcagaataatattctattgtatgcatttcccacattttgttcattcatccatctgtggtgatacatttgggttttctccaccttttggctcttgcgaataatgccacaatgagcagggtca------tatctgagtccctgtgttcaattctttgaggtatatacctaggaggggaattg-ctgggtcatatggtaatt a score=98794.0 s hg17.chr17_random 1434790 1078 + 2618010 ctatgtgtagctttctgagagaccataaaactcttttcaacagtgactgtaccattttacatttctgccagcaaggtgcaattgttctaattcctccacatccttgccaacacgcgttattttcttttattttattatagctatcctagtaggtataaagtagtatcttatggtttagatttccctaaacactaataatattggacatgtttgcatgtgcttatttgtatatcttctttgtatagatgtttatcaagtccttaggtcatttaataaattggctcatatgttattttgttgagttttaggagttctttatatcttaggtatttagtttccataagatatgtgttttacagatattttatcccaatctgtagctttactttttcactttcttgatcatatcctttaataaataaaatattttaattttgtaaaatcaaatatatatatttGACTTTCAAATGTATATACATACTTCTACATTTGGATGCAATCTGTCCTGTTATACATTGCTTTTGTATTATACATTGCTGCTGTATTATGCatgctcgtgtattatccattgagaagaaggtaaaataggaaattttattttatacatatttaacca--caataacaaTTTAAAAAATAGAATTCC---------tttttttttttttttttttgagacggagtctcactctgtcccgcaggctggggtgcagtggtgcgatctgatctcggctcgctgcaagctctgcctcccgcgttcacgccattcccctgcctcagcctcccaagtagctgggactacaggcgcctgccagcaggccgggcgaattttttgtgtttttagtagagacggggtttcaccgtgttagctaggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcttgagccaccgcgcccggctAAAAAATAGAATTCTTAAAGAAATCCTAAATCTGTGTAATGTTCACAATAATTGATGCTTAATGAACAGGTACATGAGTCTCTTGAAAGTCAAatatacatatatatttaattatatatacatatatata s panTro1.chrUn_random 27483710 1089 + 240967748 ctatgtgtagctttctgagagaccgtaaaactcttttcaacagtgactgtaccattttacatttctgccagcaaggtgcaattgttctaattcctccacatccttgccaacacgcattattttcttttattttattatagctatcctagtaggtataaagtagtatcttatggtttagatttccctaaagactaataatattggacatgtttgcatgtgcttatttgtatatcttctttgtatagatgtttatcaagtccttgggtcatttaataaattgggtcatatgttattttgttgagttttaggagttctttatatcttaggtatttagtttccataagatatgtgttttagagatattttatcccaatctgtagctttactttttcactttcttgatcatatcctttaataaataaaatattttaattttgtaaaatcaaatatatatatttGACTTTCAAATTTATATACATACTTCTACATTTGGATGCAATCTGTCCTGTTATACATTGCTTTTGTATTATACATTGCTGCTGTATTATGCATGCTCGTGTATTATCCATTGAGAAGAAGGTAAAATAGGAAATTTTATTTTATACATATTTAACCATGCAATAACAATTTAAAAAATAGAATTCCttttttttttttttttttttttttttttgagacggagtctcactctgtcccgcaggctggggtgcagtggtgcgatctgatctcggctcgctgcaagctctgcctcccgcgttcacgccattcccctgcctcagcctcccaagtagctgggactacaggcgcctgccagcaggccgggcgaattttttgtgtttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcagcctcccaaagtgctgggattacaggcttgaaccaccgcgcccggctAAAAAATAGAATTCTTAAAGAAATCCTAAATCTGTGTAATGTTCACAATAATTGATGCTTAATGAACAGGTACATGAGTCTCTTGAAAGTCAAatatacatatatatttaattatatatacatatatata a score=48476.0 s hg17.chr17_random 1435868 584 + 2618010 tatatagttattcatgctttggtgtcatatgtaaaaatccattgacaaatctaaggcccagaatatttatgcctatgtcttgtcttctaaaaggtttttgatgttaactcttacatctacatcattgattcattttgagttaatgttttatatggtgtgaagtaggggaccagcttcattcttctcaatgtggaagtcccgttggcccaacacattttgatgaagatgctgcttttctattatagacttgtcacccttttcagaaatcggctgctaatagacacataaatttatttctgactc--aaatattgaattgatctatacaactatccttatacaaatcccaaatggtttttattagggcttctttggaataatttttaaaatttagaaattgtgagtcctctaaatttgttctttctcaaaattgttttgaccatttggatccccttgcaatttcacataacttaaggatcagctttctgcatttctgcaaaaaaataaaa---ggctgttgcaattttgatatggattagcttgaatttgtaggtaactgtatgtggtactgatgtcttaaaatattaagt s panTro1.chrUn_random 177963927 584 - 240967748 TATATAgttactcatgctttggtgtcatatgtaaaaatccattgacaaatctaaggcccagaatatttatgcctatgtctt--cttctaaaggtttttttatgttaactcttacatttacttc---gattcattttgagttaatattttatatggtgtgaagtaggggaccagcttcattcttttcaatgtggaagtccagttggcccagcaccttttgatgaagatgccgcttttctattatagacttgtcacccttttcagaaatcagctgctaatagacacataaatttatttctgactctcaaatattgaattgatctatataactatccgtataccaatcccaaatggtttttattagggcttctttgtaataatttttaaaatttagaaattgtgagtcctctaaatttgttctttctcaaaattattttgaccatttggatccccttgcaatttcacaaaacttaaggatcagctttctgcatttctgcaaaaaaaaaaaaaaaggctgttgcaattttgatatggattggcttgaatttgtagataactctatgtggtactgatgtcttaaaatactaagt a score=69202.0 s hg17.chr17_random 1436452 761 + 2618010 cttcgaccccatgaacatgggctgcctttccatttaaataagtgttcagtttttttcatcagtgctttatatttttcagtgtatattaaaatatttgttaatctaactttcttggttaaatttgttctaaagtattttaatattttgaatgatattgtaaagtgaattactatttaaatttcctttgcaaattgttcattgcaaatgtgtagaaatacattcaatttttgtatgttgattttgcacctggcaattgggctgaatttgtttcttagtaactttcttgtggattttgagagatttttctacatataagaacatgtcatatgtgaatagatatatctttatcttttccttttaaattgggggaccttttatttattgtccttgcccacttgctctgtctagaacttccaatataatgttgaatagcaatgatgaaagtgggcatctttgtcttgtttctatcttagtgggaggctttcattttGACTTTGGGTACAATATACGGAGGGAAAAAAACAGGAAAAACTGTGCTTCTTAAAATCTCTTAAAACAAATTTGCTAAATATTTTATTACTGATTTATTTTTAAATGATGTTTTATATCCTAAAAATTCAGGAACCACCtattaaaatatttaaaatgttaaaatattaGAACAGTTGCCTAGGACCAAATTTACCCAACATCAAAAGCTTATAAAAGCTCTTTATTTTATAACTTTCAGGGGGATCTCATATATCTGAGTGGAAACACTT s panTro1.chrUn_random 27484834 761 + 240967748 cttcgaccccatgaacatgggctgcctttccatttaaataagtgttcagtttttttcatcagtgctttgtatttttcagtgtatattaaaatatttgttaatctaactttcttggttaaatttgttctaaagtattttaatattttgaatgatattgtaaagtgaattactatttaaacttcctttgcaaattgttcattgcaaatgtgtagaaatacattcaatttttctatgttgattttgcacctgacaattgggctgaatttgtttcttagtaactttcttgtggattttgagagatttttctacatataagaacatgtcatatgtgaagagatatatgtttatcttttccttgtaaattgggggaccttttatttattgtccttgcctacttgctctgtctagaacttccaatataatgttgaatagcaatgatgaaagtgggcatctttgtcttgtttctatcttagtgggaggctttcattttgactttgggtacaatatACGGAGGGAAAAAAACAGGAAAAACTGTGCTTCTTAAAATCTCTTTAAACAAATTTGCTAAATATTTTATTACTGATTTATTTTTAAATGATGTTTTATATCCTAAAAATTCAGGAACCACCtattaaaatatttaaaaagttaaaatattaGAACAGTTGCCTAGGACCAAATTTACCCAACATCAAAAGCTTATAAAAGCTCTTCACTTTATAACTTTCAGGGGGATCTCATATATCTGAGTGGAAACACTT a score=13518.0 s hg17.chr17_random 1437213 114 + 2618010 ACATTAATTGTAACACAACGTTAGTTGTAAGTATTTTCAAGTGC------------------TTAGCA--ATTTTTGCTGTTAGTAGATCTTAACAAATATTTCAAATTT--------------TTTTGCTTTATTGCTGAGCGAATA s panTro1.chrUn_random 27485595 114 + 240967748 ACATTAATTGTAATACAACGTTAGTTGTAAGTATTTTCAAGTGC------------------TTAGCA--ATTTTTGCTGTTAGTAGATCTTAACAAATATTTCAAATTT--------------TTTTGCTTTATTGTTGAAAGAATA s galGal2.chr1 39258456 144 - 188239860 ACTTTAAATGAAGAAAAAAATTAGT----AAAATTTCAAAGTGCAAGTTGAAGAGATTATTTTTAACAGGATTAGTACTGTCAGTATATACAAACAAGCATTTCAAAGTTTGACTTGTGAAAACTTTGACTTTGGAATTGAGGGAGTG a score=45719.0 s hg17.chr17_random 1437327 521 + 2618010 A-TCATGTATAAAGTTATCCTCACTTCATTGTTAAAGATTAAATTATCTAGGCGTTTATAAAGCACATTAAGATTGCATGCAATGCACtaaattaacaaatattatttttaataaataaaaataGCTAAAATGATGATGTAATAAGGATTTCTTAGAGAGTCAGTTGCTTTTATACAAACAA---TAATGAGCATAGCTGAATGTGCTGATTCTCTGAATCCATGATAAAAATAATAGATTTTTATCTTATCCGTGGATAACAATCCATGATTCTCTGAATTCACAATGAAAAAACATTTTATTAACCTTTAAACTACAAAATAAATAAGAAAAAAGTGAAAACGTTAGAGATTTCAGATAATTAAAATAATTGAAGGCTCAAATTCACCAAGCAGTCTTAGGCATTAAAAAAACAATGGCATGATGCTTTCAAGTAGATCAACAAAAGTAAAC---AAATAACATGGGGTTTGGGGATTCACTTGTGGTTGTAATGGATAAATTAAAATATCAAAGCTAGTTTCTTC s panTro1.chrUn_random 27485709 528 + 240967748 AATCATGTATAAAGTTATCCTCACTTCATTGTTAAAGATTAAATTATCTAGGCGTTTATAAAGCACATTAAGATTGCATGCAATGCACtaaattaacaaatattatttttaataactaaaaataGGTAAAATGATGATGTAATAAGGATATCTTAGAGAGTCAGTTGCTTTTATACAAACAACAATAATGAGCATAGCTGAATGTGCTGATTCTCTGAATCCATGATAAAAATAATAGATTTTTATCTTATCCGTGGATAACAATCCATGATTCTCTGAATTCACAATGAAAAAACATTTTATTAACCTTTAAACTACAAAATAAATAAGAAAAAAGTGAAAACTTTAGAGATTTCAGATAATTAAAATAACTGAAGGCTCAAATTCACTAAGCAGTCTTAGGCATTAAAAAAACAATGGCACGATGCTTTCAAGTAGATCAACAAAAGTAAACAAAAAATAATATGGGGTTTGGGGATTCACTTGTGGTTGTAATGGATAAATTAAAATAGCAAAGCTAGTTTCTTC a score=16867.0 s hg17.chr17_random 1437848 172 + 2618010 TCATTCAGAGTTGCAAACATTAAAACAACCAAAACATTATAATAACCAATATGTTAATTAAATATATCTGTCATTATATAAAA---CTTGTTTCTGTTTGAAAATATTGCTGAAAGTGCATGCGTTATTTGTCAACAATTTAT-TTCCCAAATTAGAATAGTTGTATTACATTCTG s panTro1.chrUn_random 27486237 172 + 240967748 TCATTCAGAGTTGCAAACATTAAAATAACCAAAACATTATAATAACCAATATGTTAATTAAATATATCTGTCATTATATAAAA---CTTGTTTCTGTTTGAAAATATTGCTGAAAGTGCATGCATTATTTGTCAACAATTTAT-TTCCCAAATTAGAATAGTTGTATTACATTCTG s danRer1.chr19 21787674 164 - 24317769 TCATTTACCAATAAAAATAAAAAAACTAACAAAA------AACAAACAAACTAGTAATTAAGGATCACAGTGCATGCCTAAAATACTTTCCTTTTAATTTGGTATGCTTATG-----TCATGTGATATGTCACTATACTTCAGATTAATAATTCAGTATAGTTTTATCACTTATT- a score=757.0 s hg17.chr17_random 1438020 55 + 2618010 AAtttatatgctttat-atgtatatatgctttatatgctttatatgctttacatgc s danRer1.chr19 21787838 55 - 24317769 ATTTTATATATTCTATTATGTGCAGGTAAAGAATATG-TTTATTTTTTTTTTTTAC a score=11278.0 s hg17.chr17_random 1438075 44 + 2618010 AATAAGCAACTTTGGAATTTCACATAGAGGCAATTTTGAAAATT s panTro1.chrUn_random 213481252 44 - 240967748 AATAAGCAACTTTGGAATTTTACATAGAGGCAATTTTGAAAATT s canFam1.chr22 42621059 44 - 64236280 AATAGGCAATTTTGAAACCTTATATAAAGGCAATTTTGAAAATT s danRer1.chr19 21787893 41 - 24317769 -ATCAAAACCCTGGTTATTTCATATTGAA--ATTTTTGTAACCT a score=0.0 s hg17.chr17_random 1438119 21 + 2618010 AAACCACAATTAGATTATTTA a score=2294.0 s hg17.chr17_random 1438119 9 + 2618010 AAACCACAA s panTro1.chrUn_random 213481296 9 - 240967748 AAACCACAA s canFam1.chr22 42621103 9 - 64236280 AAGCCACAA a score=2221.0 s hg17.chr17_random 1438128 12 + 2618010 TTAGATTATTTA s panTro1.chrUn_random 213481305 12 - 240967748 TTAGATTATTTA s canFam1.chr22 21614861 12 + 64236280 TTAAATTCTGTA a score=2604.0 s hg17.chr17_random 1438140 21 + 2618010 CAT-TTAAAGCATATAAATTGt s panTro1.chrUn_random 213481317 21 - 240967748 CAT-TTAAAGCATATAAATTGT s canFam1.chr22 21614873 22 + 64236280 AATGTCAAAGTATTTTATTTCC s danRer1.chr19 21787934 21 - 24317769 TGT-TTGAAACAAGTCATGTGT a score=0.0 s hg17.chr17_random 1438161 58 + 2618010 atatgcatatacaatatgtatatacatataaagtatatatatatgtatatacatataC a score=251.0 s hg17.chr17_random 1438161 17 + 2618010 at----atgcatatacaatat s canFam1.chr22 21614899 21 + 64236280 ATTAGAATACATATATTACAg a score=83.0 s hg17.chr17_random 1438178 39 + 2618010 gtatatacatataaagtatatatatatgtatatacatat s canFam1.chr22 21615099 28 + 64236280 ttatatatat--------tatatatat---tacattatc a score=573.0 s hg17.chr17_random 1438217 2 + 2618010 aC s panTro1.chrUn_random 27486410 2 + 240967748 AC s canFam1.chr22 21615127 2 + 64236280 ac a score=19798.0 s hg17.chr17_random 1438219 88 + 2618010 AATTTATATGCTTTAAATG---TAAAT-----AAACTAATTGTGGTTTAATTTTCAAAATTGCCTCTATGTGAAATTCCAAAGTTGCTTATTTTCT-- s panTro1.chrUn_random 27486412 88 + 240967748 AATTTATATGCTTTAAATG---TAAAT-----AATCTAATTGTGGTTTAATTTTCAAAATTGCCTCTATGTAAAATTCCAAAGTTGCTTATTTTCT-- s canFam1.chr22 21615129 96 + 64236280 aatttacatgttttaaatattttatatttataGGTCCAATTGTGGCTTAATTTTCAAAATTGCCTTTATATAAGGTTTCAAAATTGCCTATTTTGT-- s danRer1.chr19 21787955 84 - 24317769 ATTTAATATGCTTTTTATG---TATAT-----AAAATCACCTTAGGTTATTTTTCATAGT------TATTCAAAATTGCAGGTCTACTGCTTTAATTT a score=24245.0 s hg17.chr17_random 1438307 135 + 2618010 CCTTCAGTAAAATGATGTAAAGTTATTAGTTCACTTAATATAATGAAAGTAAAG----------AGCATTGTTCACAAGTTGATTGTAGAAGAAAAA-------CACATAGGCAGCTCTCCATGTCATTGGTCAATACCATAT-TTTCTTAGA s panTro1.chrUn_random 27486500 135 + 240967748 CCTTCAATAAAATGATGTAAAGTTATTAGTTCACTTAATATAATGAAAGTAAAA----------TGCATTGTTCACAAGTTGATTGTAGAAGAAAAA-------CACATAGGCAGCTCTCCATGTCATTGGTCAATACCATAT-TTTCTTAAA s rn3.chr15 72294078 128 + 109774626 CTTTTAGTAAAATGGCATAAAA-TATTAATTCA-TTGAT---ATGACAGTAAAG--------AAAACATTG----CAATTTGTTCATAGAATAAGAC-------AACATGGGGAATTCTCCACAGTAATGTTCCATATTATAT-TTTTTAAGG s canFam1.chr22 21615225 133 + 64236280 ACTTTAACAAAGCAATGTAAAC-TATTAGTTCA-CTGAT--AATGAGAACAAAG--------ATAAGCTTGTTCACAAACTGGTTATAGAGAAAAAA-------CATACAAACAAATCTCTATGTCATTTGTCAATACTACAT-TTTCTTAAA s danRer1.chr19 21788039 139 - 24317769 CCTCCAATGA------GTAAAA-TTAAAATCTACCTAAT-----CACAGTAAACCTCATTGGAAAGACATGTCTCTA--TTACTTGAAATGTAATGATGATCTGCGCTTAGATAAGGATAAAGAATGTGTGATAATGTTTTGCATTTATTAGG a score=0.0 s hg17.chr17_random 1438442 4 + 2618010 AGAT a score=-1110.0 s hg17.chr17_random 1438442 1 + 2618010 A- s panTro1.chrUn_random 27486635 1 + 240967748 A- s rn3.chr15 72294206 1 + 109774626 A- s canFam1.chr22 21615358 2 + 64236280 GA a score=602.0 s hg17.chr17_random 1438443 3 + 2618010 GAT s panTro1.chrUn_random 27486636 3 + 240967748 GAT s canFam1.chr22 21615360 3 + 64236280 GGT a score=7230.0 s hg17.chr17_random 1438446 66 + 2618010 CAGAGTCTGGAAGTACA----------------------GATGTAAA---GTTGATTTCA---ATACATCTTGTCTTAAAATCCAGGCTAT-----CTT s panTro1.chrUn_random 27486639 66 + 240967748 CAGAGTCTGGAAGTATA----------------------GATGTAAA---GTTGATTTCA---ATACATCTTGTCTTAAAATCCAGGCTAT-----CTT s canFam1.chr22 21615363 96 + 64236280 TTTTGCCTAGAAATGTAGGAAACTTATAAGATTAATATTGATTTAAAAAGATTAATATTG---ATCTATCTTGTCTTAGGACTCAAACTGTCTTTACTT s danRer1.chr19 21788178 68 - 24317769 --------CAAAATGTA---------------TAGTGCTGCTGTATA---GTTCATTTCACAGCTACAAGTTCATTTAAAATGTGGACAAT-----CTT a score=37437.0 s hg17.chr17_random 1438512 302 + 2618010 AGTCACCCACTGGAACTTTCCACCTGGGACATGTATATAAATGGATCAGAGTTCCGTTGGCTGATGTAATTTAATCAAATTCTGCACATTTGCAACTGGCTTTATACTAAGCTGTTTGATTTGTCCTTCTTGAAtatattatagattatattattattattatagaatatattatagattatattatTAAATCTTTTTAACATCTTATCTAATGTCAACAAGTTTTATAAATACTTCTGTATCACTTTACTCATCGAATCTAAATGTTCC--------------------------------TCCCATTACAAACT--------TAAATAAAAATACTCCAG s panTro1.chrUn_random 27486705 289 + 240967748 AGTCACCCACTGGAACTTTCCACCTGGGACATG----------GATCAGAGTTCCGTTGGCTGATGTAATTTAATCAAATTCTGCACATTTGCAGCTGGCTTTATACTAAGCTGTTTGATTTGTCCTTCTTGaatatattatagattatattattattat---agaatatattatagattatattattaaatctatttaaCATCTTATCTAATGTCAACAAGTTTTATAAATAATTCTGTATCACTTTACTCATCGAATCTAAATGTTCC--------------------------------TCCCATTACACACT--------TAAATAAAAATACTCCAG s canFam1.chr22 21615459 303 + 64236280 AGTCATCCAATGGGCCTTTCTACCTGGGATATGTATGTTAATAAAACAGATTTCCAACAGCTGATTTGACTTAACCAATATCTGCATATCAACAAGTTGTTTTAAACTTAACCTTTTGGATTGCTCCTCTTGAATATATTAT---------------------AGAA-AGATTATTAACCATAC-----------TTTAGCATC----CTAATTTCAATAC-TTTTACAAA-ATTTCTGTTTTGTTCTAGACATCAAACCAAAATGATACAAGTAAAAAATTCTTTGTAAAATTATTGAAATTAACATGGTAAAGTATGATTAATAATTGAAAATATCTCAA a score=244927.0 s hg17.chr17_random 1438814 1449 + 2618010 TGTGCAGCTTTACTAGAAACTTCATCAAGTATCTGACCTTCACAGATAAAAAGCTGCACTGGCAACAACATAGATTTTATTCCTTATAACAGATAGAAGATCC---TTGAGAA-TAAAAATTTTATAAGAGAATAATTTAACATATCTCATATTATTACCATAACAAGGCAACCCCTTATTAAGGTTCAAAGAATGT-CAAAGGAAGCGGGATTCTTTCATTTACATTATATTGCTTAATAATTCTACA-AAATAAGAGAACAT-TGTATGGTCCCAGAGGTACAGTAAGAGATTTGAATATACACTTAGGCAAACCTTCTAGCTACAGGTAAATTTATTTAATTCTCATAAAATTACCAACGAAGAACTAATCCATTACATGACTCACTGAAATCTTTATAAATTAACATTTTTGGTATGTGAGTGT-TATTTCATTTGCCAAAAAATATCCTTTACAATTAATGG-CACTGTTTAATACGGTAATTTCAAAAATTGATTCTCAC------TTATTA-CAATTATATTAATAACACTCATGGTAATTCTATGATCATAATCATGGTAAAATACTAATTGAGAactgtaagttctaggcactgtattacatactttacaaattttctcatatgattcttaaaaaaacttaagtggtaactattattatgagcatgttttacgtataatcacataggctaaggttgttaagtata-ctttttaaggtaacaaagctactaagtgttggaacagagattcaaacatcagtctgacccaaTAAATTGCATAAGAAATACAAGTGACAA-----GGAACTAATATC----------------AATAtgtttttcaaaatgcaagccacaatctactaatagttcatgaactcaactaaggttcatcatcagtattatttaaaataaaatttaataagttataaatattagaccgtatcataatagtaacaatataattgattcatgaatttattttcagatatatTCTATTGATGAATT-AACACAAAACCAGAGTTAAACATTTTTACAATGCTGAGTTCTATTAACTCCATGAAAGAGCACATGCACCATTTAAAAAATTACCAAGTCATCTGCAGAAGGCAAAAAGTCAGTTTTT-AAGTGCTAGAAAGTGAGAGTTCATGAACGCTGTGCTTATTAAGCATTAAAAATTAGTATCCTGGAGAGGACAG---AAATCAAATGACCTGCATATAGTTGGATAAAATGAATTTTACTCTTCATTGATCAGGAAAAAGTCTTCACTTTGTGTCCAGTAAGGGTTTGT---AATCTTGGGGATATTCAATAGTCATGGTCCTTTACAAGCTTTGATTGATTAATGACAGCAGTGATAAACACAATAATCATTTTTGATATTTCATAGGGAATTGCCACTATAGGCTGTATGGTCAAAGTAAGCAACAATTTTCTTATGGTCCTTTCCTTAATCTCTATTG----------TAGAGTAATGATACAAGGAA s panTro1.chrUn_random 27486994 1450 + 240967748 TGTGCAGCTTTACTAGAAACTTCATCAAGTATCTGACCTTCACAGATAAAAAGCTGCACTGGGAACAACATAGATTTTATTCCTTATAACAGATATAAGATTC---TTGAGAAATAAAAATTTTATAAGAGAATAATTTAACATATCTCATATTATTACCATAACAAGGCAACCCCTTATTAAGGTTCAAAGAATGT-CAAAGGAAGTGGGATTCTTTCATTTACATTATATTGCTTAATAATTCTACA-AAATAAGAGAACAT-TGTATGGTCCCAGAGGTACAGTAAGAGATTTGAATATACACTTAGGCAAACCTTCTAGCTACAGGTAAATTTATTTAATTCTCATAAAATTACCAACGAAGAACTAATCCATTACATGACTCACTGAAATCTTTATAAATTAACATTTTTGGTATGTGAGTGT-TATTTCATTTGCCAAAAAATATCCTTTACAATTAATGG-CACTGTTTAATACGGTAATTTCAAAAATTGATTCTCAC------TTATTA-CAATTATATTAATAACACTCATGGTAATTCTATGATCATAATCATGGTAAaatactaattgagaactgtaagttctaggcactgtattacatactttacaaattttctcatatgattcttaaaaaaacttaagtggtgactattatcatgagcatgttttatgtataatcacataggctaaggttgttaagtata-ctttttaaggtaacaaagctactaagtgttggaacagagattcaaacatcagtctgacccagTAAATTGCCTAAGAAATACAAGTGACAA-----GGAACTAATATC----------------AATAtgtttttcaaaatgcaagctacaatctactaatagttcatgaactcaactaaggctcatcatcagtattatttaaaataaaatttaataagttataaatattagaccatatcataatagtaacaatataattgattcatgaatttattttcagatatatTCTATTGATGACTT-AACACAAAACCAGAGTTAAACATTTTTACAATGCTGAGTTCTATTAACTCCATGAAAGAGCACATGCACCATTTAAAAAATTACCAAGTCATCTGCAGAAGGCAAAAAGTCAGTTTTT-AAGTGCTAGAAAGTGAGAGTTCATGAACGCTGTGCTTATTAAGCATTAAAAATTAGTATCCTGGAGAGGATAG---AAATCAAATGACCTGCATATAGTTGGATAAAATGAATTTCACTCTTCATTGATCAGGAAAAAGTCTTCACTTTGTGTCCAGTAAGGGTTTGT---AATCTTGGGGATATTCAATAGTCATGGTCCTTTACAAGCTTTGATTGATTAATGACAGCAGTGATAAACACAATAATCATTTTTGATATTTCATAGGGAATTGCCACTATAGGCTGTATGTTCAAAGTAAGCAACAATTTTCTTATGGTCCTTTCCTTAATCTCTATTG----------TAGAGTAATGATACAAGGAA s canFam1.chr22 21618644 1438 + 64236280 TATATAGCTTTACTAGAAACTTCATTAAGTATCTGACCCTTACAGA-GAAGAGCTGTACTGGGAATGACGTATGTTTCATCTTCAAAAATACATACAAGATGCTGTTTAATAA-TGAAA--TTCACAGCAGAATAATTTAGCATAGCTCATATTATTACCATGGCAAGACAATCCTTTACTAGTGCCTAGAGAATGTCCAAAGAAAGTGGAATTCTTTAATTTATATTTTACTGTTTAAC-ATTCTGCATAATTAAGAGAACTTCCGTATGGTTCAAGAGAGAATGTAATGAGTTTG----------------AACCTTTTAGAGTCAGATAAACTTATTGTATTCTCAAAAGATTACCAAT----AGTTAATCCATTAGAAAATTGACTTAAATCTTAACTGAT--ATATTTTTTTTTTGT---TGTGTGTTCGACTTTATAAAGATTACCCTTGCCAATTAAAGGATATTGTTTAATGTAAGAATTTCAAAAATTGATCATTATAAAAAAATACTAGCAGTTATATTAACTGCACTGATGGTGATTTCATGATTAAAATCATAACA-----------------TGTAAATTctaggcaccatgctacatgctttgcaaaatttttcatataatc----aaagaccttatggtgtgtccagtaat---aaaatattttgcatatgatgatagatacttcaa--gtgaagtataccttcttaaggttatgaagctgtgagatggtggagcagagattcaaatatcagtctgaccccagaAATTGtat---aaataaatgtaacaatttttataaataatttttataaaattGTAAAGAAATgtatttttaaaaatgcaggccataatctgttaacagttcgtagaatcaattaggattcatcaccagtatttgtttaa--aaaatataataaattttaaata-tagaacatatcacaatagcaaggatATAATCGCCTTATTTACTTATTTCCAGTTATATTCATTCAATGAATTAAACACTCTACCAGAGATAAAAATATTTACAAAGTTTAG-TCTATTAGCTGCATCAAACAATATACACACCG-TTAAAAAAAAAAAAACTATTTTGCAGAGGGCAAAAAGTCAGTTTTTGAAGTTCTGGAAAGTGAGAGTTCATGAAGGTTGTGCTAATTAAGTATT-AAAACGGGTACCCCAGAGAGGATAGAGTAAGTTCATTGATCTGTATATAGTTGAATAAAATGAGTTCCATTGTTCATTGATCAAGAAAGGGTCTTTGCTTCGTATCAAGTAAGGGTTTGTACAAGTCTCAGAGTTGCTCAATAGGCAT-GTTCTTTACAAGTCCCCACTGATTAATT-CTGCAGCAAAAAACACAACAGTCAGTTTTGATATTTCCTCGGCAAGTAGTTCTGTGAGCTGTTTGTTCAAAGTAAGCAAAATTTTGCTTACAGTCATTTCCTTAATCTTTCTTGGCTGAGATAATAGAATGATGACACAAATGA a score=22680.0 s hg17.chr17_random 1440263 182 + 2618010 -CGATATATGGTCAGATATTTTTGGTCAATACTTAGATCTTGGGTTTCAATTTTTAGTGGAT-ATGTTTTGTTTATCCATATAGCTTCAATTTCACTTTAATGCACTATCCATAAAA----------TAGTTACTCTACTAAAAC--------TGTTAATAATAC-CCTGATCACAGCAACAATTAATTATATTCTTTTATTT s panTro1.chr14_random 10279575 179 - 43166525 -CGATATATGGTCAGATTTTTTTGGTCAATACTTACATCTTGGGTTTAGATTTTTAGTGGAT-ATGTTTTGTTTATCCGTATACCTTCAATTTCACTTTAATGCACGATCCATAAAA----------TAGTTACTCTACTAAAAC--------TGT---TAATAC-CCTGATCATAGCAACAATTAATCATATTCTTTCATTT s canFam1.chr22 21620082 201 + 64236280 CAGATAAATGATCGGATTGTTTTGGTTGACATGTCTACCTTGGTTTTAGATTTCTAATGCATAATATTGTGTTTATTTA-GTCTCTGCATTCTCCTTTCCTTGTACAA-CCATCTGATGTACAGATTTAGAGACTCGATTGCAACATGGATCTTCCTAACAATACACTTGACAACAGCAACAATTACTAATGTCCTTTCATTT a score=66056.0 s hg17.chr17_random 1440445 766 + 2618010 GTACAAGGCTGAATCATTAAAAAAA-ATCCTGTGGGCAGGTGTGTCATATTTTGGAAAATCAATTGGCTTCCTTATTAATTTTACATAGAGTCTTCTTAACCTACAAtcaaggatttcaaagggttaaatatttaatctacttacaagttaacaagttagcttgccacaatttcatggacaatgggagaagataaaatatttctaggtgagagacaaaggacattattactgataatgctgcaaaagcagtaaaagcatatgtacattcctgtcactttcccttgccccagagtccaatggggAGATAcatatgggttactttcccttgccccagagtccggtgggaagaaacacatgggctcaggtagaagccagcacacacagtgagttgtgttcagag---agaagctgagctttagggaatgtggatctcttataatgggtaggaagcatatctacccttcactctggaaggagacatcccttctattttctaaggctcttAATATGAGACAAACAGCAACATGCAACATACGTGAAAATTTTTCTCTCAACACTTACCTTGGAGCATTTATCCAAATAAAAACAGGAGACTAAATAGTATAGAAAATATTGTGATAAGTAAATTCTGTTTTGGAATTGTGAATAAAGTGATTCTGTTCTTCAGTACTCTTGCAAGAAAAAATGTGCAAGAAATTTTGTTGAACCTGTATCTCAGGGACAACATATGGCTTCCTTTGCTATGATTGCTTCTGTCATAGAGCTTCAA s panTro1.chr14_random 10279754 765 - 43166525 GTACATGGCTGAATCATTAAAAAAAGATCCTGCGGGCAGGTGTGTCATATTTTGGAAAACCAATTGGCTTCCTTATTAATTTTACATAGAGTCTTCTTAACCTACAAtcaaggatttcaaagggttaaa----taatctatttacaagttaacaagttagcttgtcacaatttaatggacaatgggagaagataaaatatttctaggtgagagacaaaggacattattactgataatgctgcaaaagcagtaaaagcatatgtgcattcctgtcactttcccttgccccagagtccagtggggagatacatatgggttactttcccttgccccagagtccaatggggagaaacatatgggctcaggtagaagccagcacacacagtgagttgtgttcagagagaagaagctgagctttaggaaatgtggatctcttataatgggtaggaagcatatctacccttcactctggaaggagacatcccttctattttctaaggctcttaatatgagacaaacaGCAACATGTGACATACATGAAAAATTTTCTCTCAACACTTACCTTGGAGCATTTATCCAAACAAAAACAGGAGACTAGATAGTATAGAAAATATTGTGATAAGTAAATTATGTTTTGGAATCGTGAATAAAGTGATTCTGTTGTTCAGTATTCTTGCAAG-AAAAATGTGCAAGAAATTTTGTTAAACCTGTATCGCAGGGACAACATATGGCTTCCTTTGCTATGATTGCTTCTGTCATAGAGCTTCTA a score=6206.0 s hg17.chr17_random 1441211 67 + 2618010 TGCAGCATTCAAATATAGGAGTATCAAGGCCAATAAAGAAAACTTGTCAGGAATCAGTGGATACAAA s panTro1.chr14_random 10280519 64 - 43166525 TGCAGTATTCAAATATAGGAGTATCAAGGCCAATAAAGAAAAC---TCAGGAATCAGCGGATACAAA s canFam1.chr30 40730307 42 + 43165425 TGCAATGTTCCAATGTAGGTGTACCA-----AATAAAGGAA-----CAAAGA--------------- a score=8067.0 s hg17.chr17_random 1441278 85 + 2618010 TATCTCTGATACAGCCTGAAAGTTTTATACTTCAACAGGCATGTACGTAGATCATGTGAAATACTACCATTATAGACTTACAAAA s panTro1.chrUn_random 27489228 85 + 240967748 TATCTCTGATACAGCCTGAAAGTTTTATACTTCAACAGGCATGTACTTAGATCATGTGAAATACTACCATTATAGACTTACAAAA s canFam1.chr30 40730349 77 + 43165425 CAT-TCACAAAAGGTCTGAAAGTCCTTTCTT------GGACTCTTCCTAGATGATCTGCACTTGCAAGATC-TGCACTTGCAAGA a score=2611.0 s hg17.chr17_random 1441363 28 + 2618010 ATTTCAACAGAGCATATAAACTCTTTTA s panTro1.chrUn_random 27489313 28 + 240967748 ATTTCAACAGAGCATATAAACTCTTTTA a score=11855.0 s hg17.chr17_random 1441391 115 + 2618010 AGATAGTAGACTTATTTATCTCCACAA--TCAATATTGTGATACAATATATCTCGGTGCATACATATGCAAGTCATAAAGAGCACAATCTATAGTTTTTGTA-----GTTATCTG-----AGGAAAT- s panTro1.chrUn_random 27489341 115 + 240967748 AGATAGTAGACTTATTTATCTCCACAA--TCAATATTGTGATACAATATATCTTGGCGCATACATATGCAAGTCATAAAAAGCACAATCTATAGTTTTTGTA-----GTTATCTG-----AGGAAAT- s canFam1.chr30 40730611 118 + 43165425 AGGTAGCAGGCTTCTCACTCCTTTCAAGTTCCCCATTGTGTAGCAATATTTGTCTG-GCATGAACACTTAAG---------GCGCAATCTGTAATTTTGTTAAATTTGTTATCTATTTCTCAGATGTC a score=65351.0 s hg17.chr17_random 1441506 504 + 2618010 TGAGAGTTGTTTTAACCAA---ATAATTTGAAATTCACAGCA-GGACAAGTGTAACTAGTTCAAACAGTTCAAGGACGTTTTTTTCTTAATTA----GTTGAGTGCAAACATGTTGTTAGTGATTTCCTGTGATATGGAACAACTGTCAATATTTTAAGCTATCTGGCTTTATAGAAAGAATATTATATTTTATAACTATGATATTCATGTCA----TATAAGAAATAAGGTAATAAC-AGTCATATGCTATAAAATGATGC-TTATTTTAACTAA---AGATTTTTTTAGCTAAAAAAATTGGTTGCTGGAAGGT-TTGAGCCTGAAGAAGTAA---TTACCAAT---TTTGCTAATATTGGGCTGATGGGAAAATAAACTTCTCTGGATGAACCTTATGAAAACTGTAGTTG-TAATAATTTTAGCAGAATATTACAATAA-TAGAAA-----------------AAGTATGACAAACTCAAC--AGCTTAACTTGTGTAGCAAATTATACCTGCGTTGAATCAAACAAATTATTTGtttttttaaa s panTro1.chrUn_random 27489456 502 + 240967748 TGAGAGTTGTTTTAACCAA---ATAATTCGAAATTCACAGCA-GGACAAGTGTAACTAGTTCAAACAGTTCAAGGACATTTTTTTCTTAATTA----GTTGAGTGCAAACATGTTGTTAGTGATTTCCTGTGATATGGAACAATTGTCAATATTTTAAGCTATCTGGCTTTATAGAAAGAATATTGTATTTTATAACT--GATATTCATGTCA----TATAAGAAATAAGGTAATAAC-AGTCATATGCTATAAAATGATGC-TTATTTTAACTAA---AGATTTTTTTAGCTAAAAAAATTGGTTGCTGGAAAGT-TTGAGCCTGAAGAAGTAA---TTACCAAT---TTTGCTAATATTGGGCTGATGAGAAAATAAACTTCTCTGGATGAACCTTATGAAAACTGTAGTTG-TAATAATTTTAGCAGAATATTACAATAA-TAGAAA-----------------AAGTATGACAAACTCAAC--AGCTTAACTTGTGTAGCAAATTATACCTGCCTTGAATCAAACAAATTACTTGtttttttaaa s canFam1.chr37 8191870 536 + 33897405 TGTGAAGTATCCTAACCCAAGTATAACTTGTATATGAAAGCATATAAAAGTATAGGTAACCCAAGCAGTGCAAA---ATGTTTACCTTAATCAATTTGTTGAGTGAAAAACTGTTATTAGTCATCTCCTGTGATGTGGTGCTATTAGCAGTATTCTACATTATATGGA-TTATAGAAAAGCTGTTACCTTTTCTAGAA--GGTATTTATATCCTATTTATAAGGATTAAAAAAAACACTAAGAACATACTTTAAATTTTTTTACCACTATAACTAACTTCGCTTTCTTT-----ACAAAACTAGTGGCTGAATATTATCAACCCGGAAGGCATAATTTTTACTGATAAGGTTATTAATTGTGGGATAATCAT-AAATTAATTTCCATGGGTGAATCTTATCATAATTGCAGCTGACAACATTTTTAGTAGAATATTCTAATAGCTAGAAACCTCCCTGGTATTATAGAAGGATGACAAACTCAACTTAATTAAATTTCCTGATACAATTATGGCTTTGCTGAATCCAACAAA-TAGTTGCCTATATAAA a score=78048.0 s hg17.chr17_random 1442010 856 + 2618010 cacctttattgaggtgtaactgatatacaaaagccttcacatattcagtgtatacaatttgatgagtctgaaaatacgcatacatctgtgaaaccatcagcacaatcaaagtaatctctgagaggtagctgctctcccatgtatactacagcattatttacaatggtcaaaatatagaaacaacctaaatgtccactgacaaaaaagaagataaagaagatgtgatatgtcaccgaacaatggaatattgttcagtatttaaaaagatgaaaatgttatcttttgtgaaaacaaggaggaa-agtagaggacattatgaaaagtgaaataagccagtcagaaaaagacatatgttgcatgattccgtctacacaggatatctaaaatagtcaaactcatagaagcagagagtagaatggtggctgccagggaatgggtgaatacggaaatggagacttgttgctcaattgatataaagttttggttacccaagatgaaaaagttttagagatctgctgtacagtattatatttatagttaacaatataacatttagcactccaaagttgaagaggatagatttcattttatgtgctttcaccacgcCCACACAC--TCACTCAGATGTGTGAGCATGCAGCATGCAAACACAAAAGACAGTaattcatcaaaatgtatacattaaaatgtccagttatttttatatcaattatatctcaataaagccttaaaaagaACAAGATAACATATTAGATACCAGAAATTGTAAGAAAAAAA-TGTCTTTTTTACAATATTTCTTTAGCCTTATCCAATTTGCAGCAAATTTGAAGTGACaattatttcataaaaaatatttaat s panTro1.chrUn_random 27489958 860 + 240967748 cacctttattgaggtgtaactgatatacaaaagccttcacatattcagtgtatacaatttgatgagtctgaaaatacgcatacatctgtgaaaccatcagcacaatcaaagtaatctctgagaggtagctgctctcccatgtatactgcagcattatttacaatggtcaaaatatagaaacaacctaaatgtccactgacaaaaaagaagataaagaagatgtgatatgtcaccgaacaatggaatattgttcagtatttaaaaagatgaaaatgttatcttttgtgaaaacaaggaagaatagtaagggacattatgaaaagtgaaataagccagtcagaaaaagacatatgttgcatgattccgtctacacaggatatctaaaatagtcaaactcatagaagcagagagtagaatggtggctgccagggaatgggtgaatacggaaatggagacttgttgctcaattgatataaagttttggttacccaagatgaaaaagttttagagatctgctgtacagcattatatttatagttaacaatataacatttagcactccaaagttgaagaggatagatttcattttatgtgctttcaccacgcccacacacactcactcagatgtgtgagcatgcaacatgcaaacacagaagacagtaattcatcaaaatgtatacattaaaatgtccagttatttttatatcaattatatctcaataaagccttaaaaaGAACAAGATAACATATTAGATACCAGAAATTGTAAGAAAAAAAATGTCTTTTTTACAATATTTCTTTAGCCTCATCCAATTTGCAGCAAATTTGAAGTGACaattatttcataaaaaatatttaat a score=103649.0 s hg17.chr17_random 1442866 719 + 2618010 tttttaagatttactttgattagttatatttatagaaat-ttaataCCTTTTTACAAATATAGAACAATTTTTAGTCACCGAATGACTTGCCTTTTTTATTCTCTCTTAACTAAGAGATAA---------------GTAACCGAAGTGTTAACCTTTAATGCAGCTAAAGTTTCCTTT---TTTTAAAAAGAAAAAAAAGATATTGTTCCCATAATAAAAGACACAACCAGGCAGTTATTCTTAGAAGAAGCCAGCTAGACATTTTAAGCATTAGTAATTAATTTTAAAAAATCCTTGTGAA----CTTTGTGCtattttaaaattat----ttatttataaGTTT--------------------CAGTAAAC---CAATTAGCATTAGAGTTACCATGAAATTTAAGAGA--CTTTGTAATCAGTTTCATTGTTTTTTTTCTACTTAGTTTTATGTGGACCTGGGCTAGATATTCCTGGACTATGCATATATAATGACAGACTTTAAAAGCAATTTAAAAGTCCGACTGTTGTCAAATTAAAAAGTCCCCACAGGAGAGTGAGGGTACAGGGTAATAACGGTTTGACACTGTAGTTCCTATATTAACCACATAACAGACC--GAAACGTTATCTATGACAGCTACAAGACAGACTT-AGGAAAGCACCAGAAAAGAGAGCAACCGATTCTCTTTTCCCAAGCAATCACCGAAAAATAAGAAACAAAATAAGACTGAAAGCTCAGTGACAGATGACTGATGGTCAAAACCATA s panTro1.chrUn_random 27490818 720 + 240967748 tttttaagatttactttgattagttatatttatagaaat-ttaataCCTCTTTACAAATATAGAACAATTTTTAGTCACCGAATGACTTGTCTTTTTTATTCTCTCTTAACTAAGAGATAA---------------GTAACCGAAGTGTTAACCTTTAATGCAGCTAAAGTTTCCTTT---TTTTAAAGAGAAAAAAAAGATATTGTTCCTATAATAAAAGACACAACCAGGCAGTTATTCTTAGAAGAAGCCAGCTAGACATTTTAAGCATTAGTAATTAATTTTAAAAAATCCTTGTGAA----CTTTGTGCTATTTTAAAATTAT----GTATTTATAAGTTT-------------------TCAGTAAAC---CAATTAGCATTAGAGTTACCATGAAATTTACGAGA--CTTTGTAATCAGTTTCATTGTTTTTTTTCTACTTAGTTTTATGTGGACCTGGGCTAGATATTCCTGGACTATGCATATGTAATGACAAACTTTAAAAGCAATTTAAAAGTCCGACTGTTGTCAAATTAAAAAGTCCCCACAGGAGAGTGAGGGTACAGGGTAATAACGGTTTGACACTGTAGTTCCTATATTAACCACGTAACAGACC--GAAATGTTATCTATGACAGCTACAAGACAGACTT-AGGAAAGCACCAGAAAAGAGAGCAACTGATTCTCTTTTCCCAAGCAATCACCGAAAAATAAGAAACAAAATAAGACTGAAAGCTCAGTGACAGATGACTGATGGTCAAAACCATA s canFam1.chr22 21622221 679 + 64236280 TTTTTAAAATTCACCTTGATTAGC--TGTTTATAGAAATGTTCACACCTTTTTACATATATACAACAATTTATAATCACTGAATGTGTTGCATCTCTTACTGTCTCTTAGACAAGAGACAAAAAAAAAAAACAAACAAAAACAAGGCATTTGCCTTAACTGCAGCTAAACTTTCTTTTTTGTTTTAG---------------ATTTTTCTCGTACTTGAAGATTCATCCAGATAGTTTTTCTTAGA-------AGCTAAACACtttaaa-attaataattgatttttaaaatttCTTTGGAAATGTTTATGTTCCATTTTTATAGTATAGGAGTATTTACAACTTTTTATAAACTTACAGAAGTTTCTATAAACTTATAATTAGCATCAGAGCTACCATGAAATTTAAGAGATCTTCTATAAACAGTTCAA----TTTTTTTCTATTTA----------AACTTGGACTAGATATTTCTAGAGTGTGCCTATATCGTGACAGATTTAAAAAACAATTAAAAAGGCAGAATGTTGTAGAACTGAAAGG-------AAAGGATGGAAGGATCAGAGTGGTGCTGTTTCAACATTG---------CATTGACCATACACGAGACTGAGAAATGATTCTTTTATTGGCCAAATGAGAAACTTGAAGAATGCCCTGGAA--------------------------AAACAATTACAG-AAAATAGAAAACTC------ACCAAAAGTTCA-------ATGACTGATGGTCAAAATTATA a score=27525.0 s hg17.chr17_random 1443585 295 + 2618010 TTggccgggcacggtggctcaggcctgtaatcccagcacttcgggaggccgaggcaggcagatcacaagatcaggagatggagaccatcctggccaacatagtgaaactctgcctctactaaaatacaaaaaattagccaggtgtggtggcgggcgcctgtagtcccagccactcgggaggctgaggcaggggaatcccttgaacctgggaggcggaggttgcagtgagctgaaatcgcgccactgcactccagcctggcaacagagcaagactctgactcaaaaaaaaaaTCAT s panTro1.chrUn_random 27491538 295 + 240967748 TTggccgggcacggtggctcaggcctgtaatcccagcacttcgggaggccgaggcaggcagatcacaagatcaggagatggagaccatcctggccaacatggtgaaactccgcctctactaaaatacaaaaaattagccaggtgtggtggcgggcgccggtagtcccagccactcgggaggctgaggcaggagaatcgcttgaacctgggaggcggaggttgcagtgagctgaaatcgcgccactgcactccagcctggcaacagagcaagactctgactcaaaaaaaaaaTCAT a score=44362.0 s hg17.chr17_random 1443880 321 + 2618010 ATATAAGTCATGAGCTGTGGTAACTCAGAGCTACAGCTCCTCAAACCGTCCCAGTAAATGTAATAAATTTAAGGGGGTCTCCAAGAACAATCAAATCTTA-GTTAGTCACCACTGCAATT----------------GTACC-TGAAGACCAAAACAGAGGACCAAAAGGCACAGGTAAGAA-TGTTGTTTCCGG-TCTTAAGGCTGGCAACACCAGCACCACTAAGTGAGGCC-GACAAGGCAATTTTGGTGGATCTCCTAAAATGTCTGATAAAATAAGACCAGGG-CTAAGTACTactatgactacgactacgactacgactatgactacgactaATCATA s panTro1.chrUn_random 27491833 327 + 240967748 ATATAAGTCATGAGCTGTGGTAACTCAGAGCTACAGCTCCTCAAACCGTCCCGGTAAATGTAATAAATTTAAGGGGGTCTCCAAGAACAATCAAATCTTAAGTTAGTCACCACTGCAATT----------------GTACCCTGAAGACCAAAACAGAGGACCAAAAGGCACAGGTAAGAAATGTTGTTTCCGGGTCTTAAGGCTGGCAACACCAGCACCACTAAGTGAGGCCCGACAAGGCAATTTTGGTGGATCTCCTAAAATGTCTGATAAAATAAGACCAGGGGCTAAGtactactatgactacgactacgactacgactatgactacgactaatcata s canFam1.chr22 21622900 328 + 64236280 AAATGAGTTATAAGCTGTATTAACCCAGAGTGAGAATATGTCAAACAGTCTCAGTAGATGAAATAAATGCAGGGAGGGCTCAAGAAAAAGGCAGCTATCA-GGGAGACATTGCTGCAATTCTCACTCACAGCACAAGTTCTCTGCAGCCCCAAATTGAGCTCCAGAAGGCACATGTAAGCA-T-TTGTTTCCAT-TCAGAAGTCCAGCAACATTGGCCTCAGTCAGTGAAGGC-AACGGGACAATTTTGGTGAGACTCCTAGAATGTCTTA-AGAATAAATCAATGGCCAGAGAGAAAGCATGATGACTACCTCTATTATAACTGTTACTACTA--------- a score=69811.0 s hg17.chr17_random 1444201 279 + 2618010 CTATTACCTGT-AATAATAATTACAAA-----------------------GCTGCTGAGTCTATTAACTTGCCAG------GCAAGGGAACACTCAACAGTTAAGAAATTTACAAAGTCTCTGCAGCATACGATCAGGGTTCCCTAAGTGATTAAAAAAAA----------GGGAATTCATAATAGTTATGCTAATTAACAG--CCGAAAC-TAGAACACCAAATTAAGTGAAATGAGTTTATACG-TCTG-CACTGTCCATTCATCAGGAAAGACTCCTTAGTTTGTTGTAATAAATAAATGTTCATT-----CAGGTCACTCAAATT s panTro1.chrUn_random 27492160 279 + 240967748 ctactacCTGT-AATAATAATTACAAA-----------------------GCTGCTGAGTCTATTAACTTGCCAG------GCAAGGGAACACTCAACAGTTAAGAAATTTACAAAGTCTCTGCAGCATACGATCAGGGTTCCCTAAGTGATTTAAAAAAA----------GGGAATTCATAATAGTTATGCTAATTAAGAG--CCGAAAC-TAGAACACCAAATTAAGTGAAATGAGTTTATACG-TCTG-CACTGTCCATTCATCAGGAAAGACTCCTTAGTTTGTTGTAATAAATAAATGTTCATT-----CAGGTCACTCAAATT s mm5.chr14 81689183 274 + 117079080 CTCCTATTTGTAAATAAGAGTCACAAA--------------------------GCTGAGTTTATCAGATTCCTAGCTTCTTATACAGGTGTGAGCACCAGTTCAGAAACCTACAAAAG-TCCATAATATATGATCAAAGATTTC-AAGTGATTGATA---------------GAAATTCAT-CTTTCTATGCTAATTATT----CTAACACACAGAGTAAGAATTTTTTAAAAAAGATTTTGCGAA-CCTATTACTATGTACGAGTTTGAGAATTATCTTTACCTTGGGCTGATTTGTGCACATTTATTAGTGATAGG------AAGTC s rn3.chr15 72296566 275 + 109774626 CTCCTGTTTGT-AATAAGACTCACAAA--------------------------GCAGAGTCTGTCAGCTTCCTAGCTCCCTGGACAAGAGTGTACACCGCCTCAGAAACCTACAAGGGCCCGAGAAAAATAAGACAGACTTC---AAGTGATAAAAA---------------GAAATTCAT-GTGTCTATGCTAAGTAATTATTCTAACATGCAGAGTAAGAATTTTA-CAAAAGGACTTAGTGAACTCTG-GACTGTGCACTAGTTTGAGAATTATCTTTAGCTGGGACTTATAGGTGCATATTTATTAGTGATGTG------AGGTT s canFam1.chr22 21623228 312 + 64236280 CTGCTATCAAT-AATTAGAATTACAAAAAAATAAGAAGAAGAAGATTTACAAAGCTGAGCCTATTAACTTGCCAA------GCAAGGGAACAGACACCAGTTAAAAATTTTACTAAGTCGCTGAGGTGGATAATCAGGGttttttaagtaattaaaaaaaaaaaaaaaaaGAGGAGTTCATGGTGGTTGTGCTAATTAAGTG--GTGAAAC-TAGCACATCGAACAAAATGAAATGAGGTCATATA-TTGG-CACTGTCCATTAGCCAGGAAAGTATCCTTAGTTTGGTCTAATAAGTGAATGTTCATT-----CAGGTCACTCAAATC a score=8743.0 s hg17.chr17_random 1444480 52 + 2618010 CATGACATCT-TATCAGCTTTAACTGGTTAGAGCCAGTTATCACGAAATGAAA s panTro1.chrUn_random 27492439 52 + 240967748 CATGACATCT-TATCAGCTTTAACTGGTTAGAGCCAGTTATCACAAAATGAAA s mm5.chr14 81689457 45 + 117079080 CACTGCTTTTATACCAGCTTTGTTTTGTACATGTTAGGT--------ATAAAG s rn3.chr15 72296841 45 + 109774626 CAATGCCTTTGTATCTGTTTCTCGTTCTGTGTGTTAGGA--------ATAAAG s canFam1.chr22 21623540 51 + 64236280 CATGGTATTT-TGTCAGCTTCAGCTGTTTAGAGTCAGTTATAATGA-ACACAA s galGal2.chr1 39290445 52 - 188239860 CATTACTTTT-TTTCTGCTCTAGATTGGCTGAAAAAGTCACGAGAAAGTGAAT a score=20269.0 s hg17.chr17_random 1444532 119 + 2618010 CAACCAG-----TTTTGCTATAtt-ctagggaagtgtta--ttgtagatatgtttatgtgtgaactagattggtatgta-aactgcatttcttagtatgagtttct----gccaaaaa-aattgagtaccact s panTro1.chrUn_random 27492491 120 + 240967748 CAACCAG-----TTTTGCTATatttctagggaagtgtta--ttgtagatatgtttatgtgtgaactagattggtatgta-aactgcatttcttagtatgagtttct----gccaaaaa-aattgagtaccact s mm5.chr14 81689502 120 + 117079080 CAACATG-GCTCTTTACCTATACA-CTAGAGAAGCATTAAGTTTTGCATTGGTTTATGT----AAAACACTGCTTTTTA-GACTGTATTT-TTAGCATGGATGTTTTGAAGCCGAAGGTTGTTGA-----ATC s rn3.chr15 72296886 122 + 109774626 CAACATG-GTGCCTTACCTATACT-TTAGAGAAACATCAAGGTTTGCATTGGTTTATGT----AAAACACTGCTTTTTCTGACTGTAATTTTTAGTGTGGATGTTTTGAAACAGAAGGTTGTTGA-----ATC s canFam1.chr22 21623591 108 + 64236280 CACTCATTTTTTTTTTTTTACACA-TTAGGGAAgtgtat--atgtgtgtgtatttaagt-----------------gcg-aactggactttttagtgtgcatcttt----gtcaaaaaagtttaaacaccact a score=402911.0 s hg17.chr17_random 1444651 751 + 2618010 AGTTTAGATGTTGGGCAAAATTAATTATTTGTCATATATATTTTG-ACTCTTCTCTAGATCCTAAATGCTCAGAAAGT-TAGTTATTTTAAAATCACAGTTTTTTAAAGC---TAAAATAAGAAACA--------TGCTGATAGTCTTTATGAGGAA-----TTTTTGGCTAAAATTAGGTTAGAATATATGCTATGT-TTCCTTTCCTTTGCTGATCTGTTTGTA-----GTAGAGATATATAAGTAAATGAACTTCT-----CATAATTTTTTAAATGCACCAAATAAAGGAGAATGGACAAA----AGCTATCAGTGCTGCACATT--GTTAAAAG--------------------------AA------------------AAGATGTCCAAGGTGTTTATCAGCAAATTGAATTACAAATGCAAAGCCAAGCAAAAGTTTTACAATGCAAAGCTGAAATCAGGATTAGATCATTTTGAGGCATCTGGGTTCCTTTTTCATGGGTATA-TACATAAGCTTGATTAGACAGAAG---TAAAATGGAA--ATCATGAATTCATAGGCAGGGGTACATATATTTAAAATAATGACATTGGTCTGCACGGAGTAGCTTAGCTAGCAGATTGTCACAGCAAGATATCTCATTAGGATATTTCCTTGAAGC------TTGTTAGCGTAA-ACAAGGCAGAAATATCCAGGTGATAGTGGCTAGACACAGGTATTCATCTTCAAATTTAACTGTTCTTTGAAGAATTATATGGTCCACAGAAATCG--------TGATATACTGTGAATATCATTCAC-AATAAGTATTATCACAAACTTT-------------AAATAAGCACAGTG s panTro1.chrUn_random 27492611 757 + 240967748 AGTTTAGATGTTGGGCAAAATTAATTATTTGTCATATATATTTTG-ACTCTTCTCTAGATCCTAAATGCTCAGAAAGT-TAGTTATTTTAAAATCACAGTTTTTTAAAGA---TAAAATAAGAAACA--------TGCTGATAGTCTTTATGAGGAA-----TTTTTGGCTAAAATTAGGTTAGAATATATGCTATGT-TTCCTTTCCTTTGCTGATCTGTTTGTA-----GTAGAGATATATAAGTAAATGAACTTCT-----CATAATTTTTTAAATGCACCAAAGAAAGGAGAATGGACAAA----AGCTATCAGTGCTGCACATT--GTTAAAAG--------------------------AA------------------AAGATGTCCAAGGTGTTTATCAGCAAATTGAATTACAAATGCAAAGCCAAGGAAAAGTTTTACAACGCAAAGCTGAAATCAGGATTAGATCATTTTGAGGCATCTGGGTTCCTTTTTCATGGGTATA-TACATAAGCTTGATTAGACAGAAG---TAAAATGGAA--ATCATGAATTCATAGGCAGGGGTACATATATTTAAAATAATGACATTGGTCTGCATGGAGTAGCTTAGCTAGCAGATTGTCACAGCAAGATATCTCATTAGGATATTTCCTTGAAGCTTAAGATTGTTAGTGTAA-ACAAGGCAGAAATATCCAAGTGATAGTGGCTAGACACAGGTATTCATCTTCAAATTTAACTGTTCTTTGAAGAATTATATGGTCCACAGAAATCG--------TGATATACTGTGAATATCATTCAC-AATAAGTATTATCACAAACTTT-------------AAATAGGCACAGTG s mm5.chr14 81689622 773 + 117079080 ATCTAAGAGGTTTACCTAAGGATGCTATTTGCCATA------TTG---CCTTCTTTAGATCCTGAATGCCTAGGAATT-CCATTAATTT-AAACCTCCACATTTTACAGA---TAAAAAAAAGAAAAAAAAGTGCAGCTGAGA-TTTGTGTGAGGAA-----TTATCGACT-AAATTAGGTTAGAGTA-ATGC--TGT-TTTCTGT-CTTTGCTGATGTATTTGTC-----AGACGGAGATATGAGAAAGTGAAGTTCT-----CATAATAGTTT--ATGAGCAAAATAAAAGAGAGTAGACAGATAACCACTATCCCTGCTGCAGATT--GCTAAAAGAGCC--TTACTAACAT--GGGGATAAAA------------------AAGATGTCCCAGGGCCTTATCAGCAAATTCAATTACAAATGCAAAGCCAGG---AGGTTTATAAACTCTAAGCTAAAATCAGATTCTCATCATTTAGAGGCATCCTGGCTGC-TTTTCATAGGTCTA-AACCTCAGCTTGATGAGACAGAGG----AAAATGGAA--AGCATGTATTTTGAGGCAAGGGG--TTATGTTTAAAATAATGAAATAGGTCTGCATGGAGGAGCTTAGCTAGCAGATTGGCCCAGCAGGTGCCCTCATTAGGACAGTTCCTTGAAGCTGTGGATTGTTAGCATAA-ATAGGAAAGCAATACCTTGGTTATAGTCCTTAGACACAGGTATTCATCTTCAAACTAAACTGTCCTTTGAAGAATTATGGGGTCCATAGAAACTG--ATCCTTTGGTATATTCTTAATATCAGGCAC-AATATGTATTAGTACAAATGGC-------------GAATGAGCACTGCT s rn3.chr15 72297008 772 + 109774626 GTTTAAGAGGTTTACCTAAGGCTGCTACTTGCCATA------TTG---CCTTCTTTAGATCCCAAATGCCCAGGAATT-TCATTAACTT-AAACCTCTACATTTTACAGA---TAAAAATAAAAAAA-----TGCAGCTGAGA-TTTTTGTGAAGAA-----TTATTGGCT-AAATTAGGTTAGAGTA-ATGC--TGT-TTTCTGT-CTTTGCTGATGTGTTTGTC---AGAGAGAGAGATATGAGAAAGTGAAGTTCT-----CATAATACTTT--ATGAACAAAATAAAAGAGAGTAGACAGATAACCACTATCACTCCTGCAGATT--GCTAAAAGAAGC--TTACTA--ACTTAGGGATAAAA------------------AAGATGTCCCAGGGCCTTATCAGTAAATTCAATTACAAATGCAAAGCCAGG---AGGTTTATAAACTCTAAGCTAAAATCTGATTCCGATCATTTAGAGGCATCCAGGTTGC-TTTTCATGGGTCTA-AACCTCTGCTTGATGAGACAGGAG---GAAAATGGAA--AGCATGCATTTTGAGGCAAGGGGG-TTACATTTAAAATAATGAAATGGGTCTGCATGGAGGAGCTTAGCTAGCACATTGGCCCAGCATGTGCCCTCATTAGGACAGTTCCTTGAAGCTGCGGATGGTTAGCAAAA-ATAGGAAAGTGATATCTTGGTTTTAGTTCTCAGACACAGGTATTCATCTTCAAACTAAACTGTCTTTTGAAGAATTATGGGGTCCACAGAAACTG--ATCCTTTGGTATACTCTTAATATCAGGCAC-AATAAGCATTACTACAAATTGC-------------AAATGAGCACTGCT s canFam1.chr22 21623699 799 + 64236280 gGTTTAGATATTGG-CAAAATGATTTATTTGTCATATACATATTG-ACTCTTCTCTAGACCTTGAATGCCCAGAAAGT-TCACTACTTTAAAATCCCAGGTTTTTTTAGAGATTAAAAGTAGAAAAA-------CTACTGAAGGTTTTTGTGAAGAG-----TTACTTGCTAAAATTAGGTTAGTGTAAATGCAGTGT-TTTCTTTCCCTTGCTGATCTGCTTGTATTAAAGAAGAGAGATATAAGAAAATGAGCTTCT-----CATAAATTATTTCATGAGCAAAATAAAGGATAATGGCCAGATAAAGGCTATCACTATTGCGCATT--GTTAAAAGGAGCT-TTACTA--ATCTTGGGATA-AA------------------AAGATGTCCCAGGTGTTTATCATCCAATTCAATTACAAATGCAAAGCCAAGGAGAAGTATATAACTGCAAAGCAAAAATCAGGGTTACATCATTTTGAGGCATCTGGGTTGCTTTTTCATGGGTCTCTAACCTAAGCTTGATGAGACAGGAG----TAAATGGAA--ATCATGTATTCATAGGCAAGGGCACATACATTAAAAATAATGAAATTGGTCTGCATGGAGTAGCTTAGCTAGCAGATTGCCACAGCATGCTCCCTCATTAGGATATTTCCTTGAAGCTTAAGATTGTTAGCGTAA-ACAAGGCAGAAATATCCAGGTGATAGTGGCTAGACACAGGTATTCATCTTCAAACTAAACTGTTCTTTGAAGAATGATGTGGTCTACAAAAATTCTAATACTTATGTATACTCTAAATTTCAGTCCC-AATAAATACTACTAGAAACTTT-------------AAATGAGCACAGTT s galGal2.chr1 39290500 770 - 188239860 AGATTAGGTAGACATCCAAATCA-TTATTTATCACCTACAAGTTATAATGTTTTATTGTTACTGAATTATAAGATATTCTTGTTCGTGATAAATTACTGGTATTTAAGTA---TGTTGAGCAGAATA-----TAGCACTGGG------TAGGAAAAAGGATTTTTTTTTCTCCTCTCAG----------ATGCTGTGTGTTGCTGTTTCAAACTGCCATGATTACA-------TGGGCTCTGTAGACAAGGTAACTTATGTAGAAATAATTTTGT--------TGTATAAGGAGCAGTGAACAGACAAAA---ATTTCTGTTGCACATTAAATTAAGAGAAGGCATTACT---------------AACCTAAGGACAACGACACCAAAGAGTCCCAGGTTCTTATCAGCAAACTAAATTACAGTAACAAAAATGAG----AGTCTGAGGAGTCTGTG-TGACTCTTTCTTTCTTTCTTTTTG--------TAGTTAACTTTTCATGCATCTC-TACTCAAATTTGATGAAATAAATACGACTAAAAGGAAGCATCAAGTAGTCAT-TATGAGAGCACATATGTTAAAAATAATGAAATTGCTCT----------GCTTACCCAGCAGATTGCCACAGCATGTACTCTCCTTAGGATGTCTGGTTGAAGATT-ACATTCCTGGCATAATTTAAAAATGGAATAACCAGGTGATGCAGGCTAGACACAGGTATTTATTGTTATAATAAA-TGTCTTTCAAAAAATTGTGAAGCTTTCATAA--TG--------AGACACACTTTAAAAATCTTCTTTAAACTAATATTAACTAAAATGGTTAGCTATATGAAACAATGAAATCAATG a score=24788.0 s hg17.chr17_random 1445402 125 + 2618010 TGCACCAGTTTACTTAAAACTGAAAGTTTATGAGACTAATTGTCTTCCCTTACATACAGATATTTGAATAAGCCATGTCCAAAGTATATTTTACTTCTGAA---------ATTTATTTTTGCTTAAATTGGAGC s panTro1.chrUn_random 27493368 125 + 240967748 CGCACCAGCTTACTTAAAACTGAAAGTTTATGAGACTAATTGTCTTCCCTTACATACAGATATTTGAATAAGCCATGTCCAAAGTATATTTTACTTCTGAA---------ATTTATTTTTGCTTAAATTGGAGC s mm5.chr14 81690395 121 + 117079080 TGTTCCAACTT-----AAATT----GTTTGTGTGCCATAT----TTCCTATGTGCATGGATATTGGAATAAACAATTTTCAAAGACTATTTTACTTTTGAAAATTGGGGCATTTCTTTTGGTTTTAATGTGAGC s rn3.chr15 72297780 83 + 109774626 TGCTCCAACTT-----AAATT----GTTTGTGTGTTGTGT----TCCCTGTGTGCAGGGATACTGAAATAAACAATTCTCAAAA--------------GAA------------------------AACTGGGGC s canFam1.chr22 21624498 101 + 64236280 GGCTCTAACTCACTT-ACACAGA--GCCTTTGAGACTGGTTGTTTTCCCTTATGTGCTGATATTTGAATAAGCCACGTC-------------------GAA-----------GTATTTTTGCTTTACTTTGATC a score=726.0 s hg17.chr17_random 1445527 12 + 2618010 TAATGTCTGATC s panTro1.chrUn_random 27493493 12 + 240967748 TAATGTCTGATC s mm5.chr14 81690516 7 + 117079080 TAACG-----TC s canFam1.chr22 21624599 7 + 64236280 TAATGTC----- a score=38588.0 s hg17.chr17_random 1445539 128 + 2618010 TGGCTTTGCAGTTAAGAGATAGTCATTATCAATATC-----------------CAGTGTCATATTTAAACCCAGATTTTAAAATTCTTTATGGTTTTGACTATTTCAGCTGCTTTATATGTTTTGGAAATA---CAACAGAATTCAAA s panTro1.chrUn_random 27493505 128 + 240967748 TGGCTTTGCAGTTAAGAGATAGTCATTATCAATATC-----------------CAGTGTCATATTTAAACCCAGATTTTAAAATTCTTTATGGTTTTGACTATTTCAGCTGCTTTATATGTTTTGGAAATA---CAATAGAATTCAAA s mm5.chr14 81690523 120 + 117079080 TGGGTTTTTAGATACAACATCTTCA-TACCATTATT-----------------CTGTATCATGTTTAGTCACAAGTTCCCAAATTCCATGTT-------CGATTTATGGAAGTATCTATACTTTTCAAATT---CAATAGAATTCAAA s rn3.chr15 72298063 120 + 109774626 TGGCTTTTTAACTACCACATCTTTA-CACCATCATA-----------------CTGAATCATGTTTAATGAAAAAATTTTAAATTCCATGTT-------TGATGTATATAAGTATCCATACTTTTCAAGTG---CAACAGAGTTCAAA s canFam1.chr22 21624606 145 + 64236280 TGGCTTTGCAATCCAGAGATATTCA-TATCAATATCATACTTGTTATGAATCTTGATATCATAGTTGACCACAGGTTTCAAAATCCCTTATAGTTTTGAGTACCTCAAT--CTCTTTATGTTTTTGAAATACTTCAGTAGAATTCAAA a score=8127.0 s hg17.chr17_random 1445667 48 + 2618010 AACTCAGAT--TTTTTGGCTGCAAAATTGCATTTCCTAATATTaggactc s panTro1.chrUn_random 27493633 48 + 240967748 AACTCAGAT--TTTTTGGTTGCAAAATTGCATTTCCTAATATTAGGACTC s canFam1.chr22 21624752 50 + 64236280 AATTCTGATAAGTTTACTTTGCAAAATATCATTTTCTAATATTGGCACTC a score=-497.0 s hg17.chr17_random 1445715 5 + 2618010 atata-- s panTro1.chrUn_random 27493681 5 + 240967748 AAATA-- s canFam1.chr22 21628205 5 + 64236280 --acaac a score=40148.0 s hg17.chr17_random 1445720 257 + 2618010 tcaaagggacagacaaagaattt-acagtttca-agtgtt-ctaaa-tcaaatggtatacaaaaaggaaggtcagtggcctaaag-caggaacaa-gcctgtttaaagttttgtgaagctgaggggaataaatacgaacgtcctcttggtcaTGACTACTATGTACATCTGCATCAGCTCATCCCTAAAGGCAGATCAACACTGCCAGCCTAGCAAACCAGCATGCCTTTAACATCTTGTGGTTTGTAATTGACTGAGAACCA s panTro1.chrUn_random 27498109 262 + 240967748 tcaaagggacagacaaagaattttacagtttcacagtgtttctaaaatcaaatggtatacaaaaaggaaggtcagtggcctaaag-caggaacaatgcctgtataaagttttgtgaagctgaggagaaTAAATACGAACGTCCTCTTGGTCATGACTACTATGTACATCAGCATCAGCTCATCCCTAAAGGCAGATCAACACTGCCAGCCTAGCAAACCAGCATGCCTTTAACATCTTGTGGTTTGTAATTGACTGAGAACCA s canFam1.chr22 21628210 253 + 64236280 tcaaaggagcagataaagaattt-acaattgca-agcact-ctaaa-gtaaatgatctaagaagagggcgataggtagcctagagattggaaaaa-gcctgtctaaaagctagtccaactgaggggaacatcc----acactgccttggtcaACATTTTAATGAAGAGGTAGTATAACTCATCAC-AAAGGCAGAGCAACCCTGCCAACCCAGCAAGCTAGCATGCATTTATCATCTCGTAGTTTGTAACTGACTAGGAATCA a score=191.0 s hg17.chr17_random 1445977 2 + 2618010 CA s panTro1.chrUn_random 27498371 2 + 240967748 CA a score=22306.0 s hg17.chr17_random 1445979 128 + 2618010 TGCTATAAATATTTTCTTTTGTTTTTTCACAGCACTGACTTCTCAAGATGACAACTTTTAGATTCTCAACATTTGTAGATAG---TCTTTGTTGATTTTT--TTCCCACATGACACACTTTTTAGTAACTCTA s panTro1.chrUn_random 27498373 128 + 240967748 TGCTATAAATATTTTCTTTTGTTTTTTCACAGCACTGACTTCTCAAGATGACAACTTTTAGATTCTCAACATTTGTAGATAG---TCTTTGTTGATTTTT--TTCCCACATGACACACTTTTTAGTAACTCTA s canFam1.chr22 21628465 128 + 64236280 TATTATAAACATTTTAT----TTTTTTCACAAGAGGGATATCTCAGGATGACATCTTTCACATTTTGAACA-TTGTAGGTGGTTTTCTTTGTTGTTTTTTTGTGTCTACATGACTCAGTTTTTAGTAACTCAG a score=29160.0 s hg17.chr17_random 1446107 125 + 2618010 TGGGATATGAAACTAATAACTGAATTG-----------CAATGGTGATGACCCCAACCTATTAACTTCAGCCTTCAGTAACAGC--------------GAGGATATGCCAGGATATAGAGAAGAAAAATGTAATTGTCCTCAGTATTTTT s panTro1.chrUn_random 27498501 125 + 240967748 TGGGATATGAAACTAATAACTGAATTG-----------CAATGGTGATGACCCCAACCTATTAACTTCAGCCTTCAGTAACAGC--------------GAGGATATGCCAGGATATAGAGAAGAAAAATGTAATTGTCCTCAGTATTTTT s rn3.chr15 72298478 128 + 109774626 TAGGATATGGAGCT------TGAACTGGTCATCTCCTTCAGTAGTGATGA-TCTAAGCTGATAACTCTAACATACACTAGCAA---------------GGTGATCAGAAGAGACATAGAGGAGAAAAACACACTTAATCTCAGGACTTTT s canFam1.chr22 21628593 134 + 64236280 TGGGATAAGAAA----TAACTGGACTG-----------CAGTGATGATGACCCAAAGCTGTTAGTTCCAGCCTTCAGTAATGGTGGTGGGTGGACTTGGGGAACATGAGAGGATGTAGAGAAGGAAAATCTA-TTAACCTTCATATTTTC a score=15328.0 s hg17.chr17_random 1446232 82 + 2618010 TTTTTTCACTAAGCATAGTCCTTGTTGGAAAGGACATAGTCAAAATAATCTTTATAATTTATCTTAAGAAATTTTCTGTGGT s panTro1.chrUn_random 27498626 82 + 240967748 TCTTTTCACTAAGCATAGTCCTTGTTGGAAAGGACATAGTCAAAATAATCTTTATAATTTATTTTAAGAAATTTTCTGTGGT s canFam1.chr22 21628727 82 + 64236280 CCTTCACACTAATGACAGTCTTTGTTAGAGGGGCGATCATCAAGAGAATTTTTATAATTCACTTCAAGCAATTCTCTGTGAT a score=30303.0 s hg17.chr17_random 1446314 359 + 2618010 A-GTTCTA-ATTTTATTAGCATGAACCTTTGtttaaaaatattattgt------atatatatatataaGATGTAAATAATGATGATTTTGATACACATATAGATAGTAAAAAGGATTTTTTTTAGATAAAACCCTGAAGACAGTATAACATTATTGAGTT-TTCTA-CGGAATTTTTTTTGTATTTCTGCTTTTTAATTATAGttttagttgacatgcaataattacacatatttttggggtacataacaatattttgatacatgtatacaaG-GACCTTAGTATTTTTCATTCTCACTAATTATAATCTTTAACGGGGGGATGTCATTAAGAGTATCTTCATAATTTATTTCAAGAAATTGTCTCTAGC s panTro1.chrUn_random 27498708 370 + 240967748 AAGTTCTACATTTTATTAGCAGGAACCTTTGtttaaaaatattattgtgtatatatatatatatataaGATGTAAATAATGATGATTTTGATACACATATAGATAGTAAAAAGGATTTTTTTTAGATAAAACCCTGAAGACAGTATAACATTATTGAGTTCTTCTAACGGAATTTTTTTTGTATTTCTGCTTTTTAATTAtagttttagttgacatgcaataattacacatatttatggggtacataacaatattttgatacatgtatacaaGTGACCTTAGTATTTTTCATTCTCACTAATTATAATCTTTAACGGGGGGATGTCATTAAGAGTATCTTCATAATTTATTTCAAGAAATTGTCTCTAGC a score=11047.0 s hg17.chr17_random 1446673 57 + 2618010 GGTTCTACATTTTATTAGTTTGAACCTATTTTATATCCAGACAGCTTTCCTCAGTGT---------------------- s panTro1.chrUn_random 27499078 57 + 240967748 GGTTCTACATTTTATTAGTTTGAACCTATTTTATATCTAGACAGCTTTCCTCAGTGT---------------------- s canFam1.chr22 21628809 79 + 64236280 GGTTTTACATTTTATTAGACTGAACCCATTTTATATCTAGACATCTTTCTTTAGTACATGGCCAAGAATTCCACAAGGT a score=6612.0 s hg17.chr17_random 1446730 27 + 2618010 AGTTGGCTCTGTGCCTCATTGTCAGAG s panTro1.chrUn_random 27499135 27 + 240967748 AGTTGGCTCTGTGCCTCATTGTCAGAG s mm5.chr14 81692517 27 + 117079080 AGATGGTTATGCATCTTGCCACCATGG s canFam1.chr22 21628888 27 + 64236280 GGCTGGCTCTGTGTGTCACTGATGGAG a score=53292.0 s hg17.chr17_random 1446757 126 + 2618010 CTGATA-GTAATTCCAACCACCATC-TAAGTTTGTCATTTGTTTACAGCATTTATTTCTCACAAGAGAATAAAGCCAAAAATTTTTAATCAAGTTAGAAGACATCATTTGATAATTACATTGGTTTTT s panTro1.chrUn_random 27499162 128 + 240967748 CTGATAAGTAATTCCAACCACCATCCTAAGTTTGTCATTTGTTTACAGCATTTATTTCTCACAAGAGAATAAAGCCAAAAATTTTTAATCAAGTTAGAAGACATCATTTGATAATTACATTGGTTTTT s mm5.chr14 81692544 125 + 117079080 CTACCA-GTAATTCCATTTCCAGTT-TAAGTTTGCCATTTATTTGTACCACTTTTTCATCACAGGAACATCACA-TGAAGCTTTCTAAGCAATTTTGAAGATAAAATTTGAAAATTCCATTGCATATT s rn3.chr15 72300300 123 + 109774626 CCGACA-GTGATTTCAATTTTAATT-TAAGTTTGCCATTTTTTTGC--CACTCGTTCATCACTGGAGCTCCACA-TGAAGTTTTCTAATCAATTTTGAAGGTAAGTTTTAAAAATCACATTGCATTTT s canFam1.chr22 21628915 122 + 64236280 CTGATA-GTAATTCCAGTC----TC-TAAGTGTTTCATTTGTTTACAGCATTTATTTCTCATAGGAGAATAAAGGCCAATTTTTCTAATCAAGTTAGAAGATATCAACTGAAAAGCACATTGCTTTTT a score=31148.0 s hg17.chr17_random 1446883 77 + 2618010 AATGTGTATGAATCTTAGCACCTTGAATTAGGAAAGATTGTCAATGACTGAATTAAACTGATAATACCTAAAAAAAA s panTro1.chrUn_random 27499290 77 + 240967748 AATGTGTATGAATCTTAGCACCTTGAATTAGGAAAGATTGTCAATGACTGAATTAAACTGATAATACCTAAAAAAAA s mm5.chr14 81692669 72 + 117079080 AATGTTTGTGAATCATCTCACCTAGAA-----ATAGATTGTCAGTTACTGAATTACACTGATAATTTCTAAAGTTGA s rn3.chr15 72300423 72 + 109774626 AATATTTTTGAATCCTCTCACCTAGTA-----GTAGATTGTCAGTAACTGAAGTAGACTGATAATTCCTAAAATTAA s canFam1.chr22 21629037 75 + 64236280 AATATATCTGAAACTTAGCAAGTTGAATTAGGGAAAATTGTCAATTACTAAATTAAAC--ATGATATCTaatagtaa s danRer1.chr17 11297287 60 + 35757233 AATGTGCAAGAA----------TTGATTT---GTAAAATGTTTTTGTATTAATTCAGCTAAATCTACGCAAGA---- a score=-2433.0 s hg17.chr17_random 1446960 5 + 2618010 --AAAAT s panTro1.chrUn_random 27499367 3 + 240967748 --AA--T s mm5.chr14 81692741 2 + 117079080 --AA--- s rn3.chr15 72300495 5 + 109774626 --TAACT s danRer1.chr17 11297347 5 + 35757233 ACAA--T a score=319.0 s hg17.chr17_random 1446960 7 + 2618010 AAAATCC s danRer1.chr17 11297347 7 + 35757233 ACAATTC a score=287.0 s hg17.chr17_random 1446965 2 + 2618010 CC s panTro1.chrUn_random 27499370 2 + 240967748 CC s mm5.chr14 81692743 2 + 117079080 AC s danRer1.chr17 11297352 2 + 35757233 TC a score=4053.0 s hg17.chr17_random 1446967 8 + 2618010 TGACAATT s panTro1.chrUn_random 27499372 8 + 240967748 TGACAATT s mm5.chr14 81692745 8 + 117079080 TAACAATT s canFam1.chr22 21629112 8 + 64236280 taactatt s danRer1.chr17 11297354 8 + 35757233 TGAGAAAT a score=937.0 s hg17.chr17_random 1446975 11 + 2618010 TTATAgtactt s panTro1.chrUn_random 27499380 11 + 240967748 TTATAgtactt s mm5.chr14 81692753 8 + 117079080 CCTTGGAA--- s canFam1.chr22 21629120 11 + 64236280 ttatggtgctt a score=35725.0 s hg17.chr17_random 1446986 93 + 2618010 attatgtattatacattaattaactcatttattcttcacaatattactaaagacaatataaat-----attattgttattttcaaaataaggaaactg s panTro1.chrUn_random 27499391 93 + 240967748 attatgtattatacattaattaactcatttattcttcacaatattactaaagacaatataaat-----attactgttattttcaaaataaggaaactg s mm5.chr14 81692761 88 + 117079080 ATTGTGTATTGAGTATTAATTAACTCATTAATTCTCCATAATA---------ATAATGAGAATTTCTGGTTATTGTT-TTATCAGTGCAGAGAAACCA s rn3.chr15 72300628 89 + 109774626 GTCTTGTATTCATTATTAATTAACTCATTAATTCTTCAAGTTA---------AAAATGAGAATTTGTAGCTATTGCTTCTTTCAGTCCTGAGAAACTG s canFam1.chr22 21629131 93 + 64236280 attatctactaagcattagttaactcctttattctttacagtaacaccaagggtaatttaatt-----attattgttattttggaaatgaggaaactg a score=11143.0 s hg17.chr17_random 1447079 66 + 2618010 tggcacaaaatgttaagtaatttgcctaaaatcataaattag----------tacttga-----taagttttgatcccaag s panTro1.chrUn_random 27499484 63 + 240967748 tggcacaaaatgttaagtaatttgcctaaaatcataaatta-------------cttga-----tgagttttgatcccaag s rn3.chr15 72300717 74 + 109774626 AAAGATAATGTGTCAGTTTATACACACACA--CACAAATGAAATAACTACATTGCAAAA-----TGATTTTTGATCGTAAG s canFam1.chr22 21629224 66 + 64236280 aggcacaatatgtcaagtaatttgcctaaaatcataA---------------TATTTGAAAAGTTGATTTTTGATCATAAA a score=2030.0 s hg17.chr17_random 1447145 8 + 2618010 ctgtctga s panTro1.chrUn_random 27499547 8 + 240967748 ctgtctga s canFam1.chr22 21629290 8 + 64236280 TTGTCTGA a score=8200.0 s hg17.chr17_random 1447153 64 + 2618010 AATTAATTTTATAATCAAAAATTCATAAACTGTCCTGCATCTCCTAA-----AACTTCTAAGAGAACCa s panTro1.chrUn_random 27499555 64 + 240967748 atttaaTTTTATAATCAAAAATTCATAAACTGTCCTGCATCTCCTAA-----AACTTCTAAGAGAACCa s canFam1.chr22 21629298 68 + 64236280 AATTGA-TGGATTAACAGAAGTTTATAGCTTGTGCTGGATCTCCTAAAATACAACTTCTAAGAAAACTA s danRer1.chr17 11297363 53 + 35757233 AGCCAATTCTGTGGTCAA-----------TTTGCTTGCATTAACTGG-----CACACCAAACTTAACAT a score=0.0 s hg17.chr17_random 1447217 26 + 2618010 tatataaaatttaattttaaatataa a score=3397.0 s hg17.chr17_random 1447217 23 + 2618010 tatat--aaaatttaattttaaata s panTro1.chrUn_random 27499619 23 + 240967748 tatat--aaaatttaattttaaata s canFam1.chr22 21629366 25 + 64236280 TACCTTGCAAATTTGATTTGGAATA a score=391.0 s hg17.chr17_random 1447240 3 + 2618010 taa s panTro1.chrUn_random 27499642 3 + 240967748 taa s mm5.chr14 81693023 3 + 117079080 TAT a score=3770.0 s hg17.chr17_random 1447243 35 + 2618010 CTTGAAACATGTCATTTTCCTGAGTGTC--TGTCTTA- s panTro1.chrUn_random 27499645 35 + 240967748 CTTGAAACATGTCATTTTCCTGAGTGTC--TGTCTTA- s mm5.chr14 81693026 35 + 117079080 CTCAATACTTGTATTCTTTCTGGCTTTT--TGTTTCA- s canFam1.chr22 21629391 30 + 64236280 -----TGCCAGCCATTTTCCTGAGTGTC--TAAGTCA- s danRer1.chr17 11297416 38 + 35757233 TTCATAAAATGATTTTACCTAAATTGTCAATAGGCCAA a score=30429.0 s hg17.chr17_random 1447278 317 + 2618010 ---TCTAATACATAATATCA-GAAT----CAAATGTTGA--------------T-ACTACTTAATA--------ATTTTATTTTAT-GTAACAAA-----ATATAAGACTATTAG----CACAGATTGTGT-----GCATTTCA-------TCATGCCAATATTAT--ATCACTAACATACTTATTTC-------------------------------------------------------------------ACTTATAATGCAATTAGACATTGTGTAAG---TTTTGTTTCAAATACAATTATGCAAAAATTCTATCTAA----CACAAATTCATTTT--AATTTTACATGTTTTG----TCTCAGCTGATTT-----AATTTTGCGGA---GGGGGCCAA---TAATTTACAAACAATAAAACAG---AAATGCCTAACTCCAGTTAATACTCTAAATCA s panTro1.chrUn_random 27499680 321 + 240967748 ---TCTAATACATAATATCA-GAAT----CAAATGTTGA--------------T-ACTACttaat-----------tttattttat-ataacaaa-----atataaGACTATTAG----CACAGATTGTGT-----GCATTTCA-------TCATGCCAATATTAT--ATCACTAACATACTTATTTCTTATTTC------------------------------------------------------------ACTTATAATGTAATTAGACGTTGTGTAAG---TTTTGTTTCAAATACAATTATGCAAAAATTCTACCTAA----CACAAATTCATTTT--AATTTTACATGTTTTG----TCTCAGCTGATTT-----AATTTTGCGGA---GGGGGCCAA---TATTTTACAAACAATAGAACAG---AAATGCCTAACTCCAGTTAATACTCTAAATCA s canFam1.chr22 21629423 337 + 64236280 ---TCTAATATTTAACTCCA-AAATGGAATAAGTTTTGA--------------TAATTACTTCATAACTT----ATTTTCCTTTATAGTCACAGATAGTGATAAAAGGCTATTGGACAACACAGATTGAAT-----GCATTTAATA----GTTATCCCAAGATTTTTGCTATTTAACATGTTAAGACC-------------------------------------------------------------------ATATAGAATGCAAT------TTGTAGAAGGGTTTTTGTTTCAAATGCAATTATGCAAAACTTCGGTGATA--TTCACATATGCATTTT--AATTTTACGTGGCTT-----TTTCAAATGGTTT-----AATTTTGTGG----GGAAACCAA---TATTTTACAAACAGTAAAACC----AAACTTCTATCATTTGTTTACACCCTAAATCC s danRer1.chr17 11297454 445 + 35757233 TGTACAGATAAATGGTTTGACGAAT----CAAATTTTAAAATTTATGGCAAATT-ATGACTGAATAGTTTTATATTTCAATTCCAT-GCAGCAAT-----TTATCCAACTATCAG----CAGAATTCATATAGCTAGTCTTGCGTAAACTGCCACACCAAACTCAA--GTCATAAAACCATTTTCATCTGAAACCtaatatttcataaaacaattaataattgcaaaaaaaaaaaatttaaaaatttactattaaatttaatGTGAAATTTAAT-GTGTGTAAG---TTTGGTTTCACAAAAAATTAAGCAGCAATTCCTGCAAGAGTTTGTGAACTAATTCTTAAAACTTGCGTTAGTTGACAAACCTATCTGATTTCTAACGATTTTATCTAAATCATAACCAAATTCGATCAATATACAGAAGAAAGGGTTTTACGCACAATTTAATTTAATGTGATAAATCA a score=7042.0 s hg17.chr17_random 1447595 65 + 2618010 ACATTTGAAAATACCaatattttattttaaaaatattCTAAGatatatatctatctatatctata s panTro1.chrUn_random 27500001 65 + 240967748 ACATTTGAAAATACCaatattttattttaaaaatattCTAAGatatatatctatctatatctata s canFam1.chr22 21629760 36 + 64236280 ATATTTGTAAATATCACTCTTATTTTTT-----------------------------TAACTATA a score=13433.0 s hg17.chr17_random 1447660 145 + 2618010 tctatctatgctacttagcttgtgataaccacttcacaatgtatacctacataaatcctcacattttcagccttaaatatgtacaagttttatttttcaattctacctcaataaagctgaatgtacataaattcattatttatag s panTro1.chrUn_random 27500066 145 + 240967748 tctatctatgctacttagcttgtgataatcacttcacaatgtatacctacataaatcctcacattttcagccttaaatatgtacaagttttatttttcaattctacctcaataaagctgaatgtacataaattcattatttatag a score=5384.0 s hg17.chr17_random 1447805 51 + 2618010 ctgtatataaaataaaatatatatgacatatatattttataatatatatta s panTro1.chrUn_random 27500211 49 + 240967748 ctgtatataaaataaaatatatatgacatatat--tttataacatatatta s canFam1.chr22 21629796 38 + 64236280 CTGAATGTAAAAGAAAGGGCATA-------------TTGAAAGATACATTA a score=0.0 s hg17.chr17_random 1447856 25 + 2618010 taaaaaagctaaaatgtatatatat a score=273.0 s hg17.chr17_random 1447856 3 + 2618010 taa s panTro1.chrUn_random 27500260 3 + 240967748 taa a score=3713.0 s hg17.chr17_random 1447859 22 + 2618010 aaaagctaaaatgtatatatat s panTro1.chrUn_random 27500263 22 + 240967748 aaaagctaaaatgtatatatat s rn3.chr15 72301163 22 + 109774626 AAGAATTAAAAAACATATAAGT a score=2903.0 s hg17.chr17_random 1447881 33 + 2618010 TTGGGGAATCAAAAAGAAAAAACATACAAAAAT- s panTro1.chrUn_random 27500285 33 + 240967748 TTGGGGAATCAAAAAGAAAAAGCATACAAAAAT- s rn3.chr15 72301185 25 + 109774626 --------TACAAAAGGATAGGTAAAGAAGAAA- s danRer1.chrUn 36388095 33 - 367113659 TTGAGTAATCTAAGGAAATACA-AAATACAAATT a score=343.0 s hg17.chr17_random 1447881 33 + 2618010 TTGGGGAATC-AAAAAGAAAAAACATACAAAAAT s danRer1.chrUn 36388095 33 - 367113659 TTGAGTAATCTAAGGAAATACAAAATACAAATT- a score=23411.0 s hg17.chr17_random 1447914 99 + 2618010 GCATTTGTACAAATATATTTTACTTTAAAA-ATCAATGAGGAAACCACATTTTAAAAGGTGTATAATTTATGAAAATAATTTTTCT----ATTCTTTAATTGAG s panTro1.chrUn_random 27500318 99 + 240967748 GCATTTGTACAAATATATTTTACTTTACAA-ATCAATGAGGAAACCACATTTTAAAAGGTGTATAATTTATGAAAATAATTTTTCT----ATTCTTTAATTGAG s rn3.chr15 72301210 99 + 109774626 GAATTTTTACTAATATGTAGTAGTTTAAAATATCTATAGAGCAGTCACATTTCAAACTATA-AAAGTTTGTGAAAAAGATTCTTCT----TATTTTTCACATAA s canFam1.chr22 21629834 98 + 64236280 ACAATTTTACATATATACTTTAATTTGAAA-ATCAATAGGAAAGCTACATTTTAAA-TGTCTATGATTTATAAAAACAGTTCTTTT----CATTTTGTTTTTAT s danRer1.chrUn 36388128 80 - 367113659 GCATTTGCACAAATGTATTTCATATTCTAT-TTCAA-----------------AAA------ATTATTCATAATAATTATTTGAATAATGAATCATTAACTGAG a score=0.0 s hg17.chr17_random 1448013 18 + 2618010 TTGACATATACCCATGCA a score=1389.0 s hg17.chr17_random 1448013 7 + 2618010 TTGACAT s panTro1.chrUn_random 27500417 7 + 240967748 TTGACAT s rn3.chr15 72301309 7 + 109774626 AAGACAT s canFam1.chr22 21629932 7 + 64236280 TTGAAAG a score=1174.0 s hg17.chr17_random 1448020 11 + 2618010 --ATACCCATGCA s panTro1.chrUn_random 27500424 11 + 240967748 --ATACCCATGCA s canFam1.chr22 21629939 11 + 64236280 CAATA--TATGTA a score=3399.0 s hg17.chr17_random 1448031 9 + 2618010 TCTTTGAAA s panTro1.chrUn_random 27500435 9 + 240967748 TCTTTGAAA s canFam1.chr22 21629950 9 + 64236280 TCTTTGAAA s danRer1.chrUn 36388208 9 - 367113659 TCTTTAACC a score=2226.0 s hg17.chr17_random 1448040 12 + 2618010 ATATAATTCTAC s panTro1.chrUn_random 27500444 12 + 240967748 ATATAATTCTAC s danRer1.chrUn 36388217 12 - 367113659 ATAGAATTGCAC a score=26328.0 s hg17.chr17_random 1448052 294 + 2618010 Aggccgggcgcggtgctcactcctgtaatcccagcactttgggaggccgaggtgggtggatcaccaggtcaggagatcgacaccacggtgaaaccccatctctactaaaaatacaaaaaattagctgggcgcggtggcgggtgcttgtagtcccagctactccagaggctgaagcaggagaatggcatgaacctgggaagcggagcttgcagtgacccgagatcccgccactgcactccagcctgggcaacagagcaagactccatctcaaaaaaaaaaaaaaaaagaagaaaa s panTro1.chrUn_random 27500456 292 + 240967748 Aggccgggcgcggtgctcactcctgtaatcccagcactttgggaggccgaggtgggtggatcaccaggtcaggagatcgacaccacggtgaaaccccatccctactaacaatacaaaaaattacctgggcgcggtggcgggtgcttgtagtcccagctactacagaggctgaagcaggagaatggcatgaacctgggaggcggagcttgcagtgacccgagatcccgccactgcactccagcctgggcaacagagcacgactccatctcaaagaaaaaaaaaaa--gaagaaaa a score=1130.0 s hg17.chr17_random 1448346 5 + 2618010 CATAA s panTro1.chrUn_random 27500748 5 + 240967748 CATAA s canFam1.chr22 21629959 5 + 64236280 TATAA a score=6687.0 s hg17.chr17_random 1448351 20 + 2618010 TTCTACATATTGTAAAACAT s panTro1.chrUn_random 27500753 20 + 240967748 TTCTACATATTGTAAAACAT s rn3.chr15 72301329 17 + 109774626 TTCTGCACA---TAAAACAT s canFam1.chr22 21629964 20 + 64236280 TTCTACATATTGCAAAATTT a score=259325.0 s hg17.chr17_random 1448371 542 + 2618010 --TTTATTTTAAAAAGCAGCATGTGCTTTGCTTTTTTTTCCCCCTAGTAATTT-TGCATCTGATGCGCAATACTAGATGCTCCATTTATTGGCATATCCTGTG--TATGCGTCTGCATGTATAAAGGTGGCACATT-------TCTTCTTTATTTTAGGACTTCTGGATTAATGGGAAACC-AACTAGACTTAAACTGAAGGGTCAGAGGTTTCTGGTGTCTTTCTTAACA-TTGCCTAGCGGGATTCTTCTCACTGCAGAAATTTCACATTCAATCACAGTATACCCTGGGGTCATTTGTCATGGTCTTGGCAGGTTAGATAAATAGTTA-TTATTAAA----------------AATAAGGACAAGTCTGAGGTAGCTAAATTAAAAGCAAAATACCAGTTATAGTGTTACTTGTAGTGGACTGACTAGTTAAGTTCAAATA-------------ACTTACTAGTTATTTGTCAGATTATAGATTTACAAAAGCATATTTTGACTCTATGGTAATAGGCAATTTAAATCAAAAATCTATTTTTGTACAAGGTTATTCTCAGGACCTGTGAGAACCTGTT---ATCTT s panTro1.chrUn_random 27500773 539 + 240967748 --TTTATTTCAAAAAGCAGCATGCGCTTTGCTTTTTTT-CCCCCTAGTAATTTCTGCATTTGATGCGCAATACTAGATGCTCCATTTATTGGCATGTCCTGTG--TATGCGTCTGCATGTATAAAGGTGGCACATT-------TCTTCTTTATTTTAGGACTTCTGGATTAATGGGAAACC-AACTAGACTTAAACTGAAGGGTCAGAGGTTTCTGGTGTCTTTCTTAACA-TTGCCTAGCGGGATTCTTCTCACTGCAGAAATTTCACATGCAATCACAGTATACCCTGGGGTCATTTGTCATGGTCTTGGCAGGTTAGATAAATAGTTA-TTA---AA----------------AATAAGGACAAGTCTGAGGTAGCTAAATTAAAAGCAAAATACCAGTTATAGTGTTACTTGTAGTGGAATGACTAGTTAAGTTCAAATAGAGCAGAATC-CAACT------------GTCAGATTATAGATTTACAAAAGCATATTTTGACTCTATGGTAATAGGCAATTTAAATCAAAAATCTATTTTTGTACAAGGTTATTCTCAGGACCTGTGAGAACCTGTT---ATCTT s mm5.chr14 81694561 531 + 117079080 --TTTGTTTGTAAATGCAGTGTCACGATGGCAATTTCT-TTTACTTGTTATTT-TCCATCT---------------------TGCTTGTTGGCATAAACTATGAACATGTGTCTCCCTGTGCAAAGGAAGGACACC-------ACTTCTTTA-CTTAAGCCTTCTAGATTTATGGGAAAGC-AGCTACCCTGGAATTTAAGGGTCAGAGTTTTCTTGTGTCTCTGTTAACA-TTGCCTAA-GGGATTCTTTCCTCTGCAGAAATTTCACATTCAATCATAGCGCACTCTGAGCGCGTTTGTCATGGTCTTGACAGGTTGGATAAATGGTTAGTTA---AAGCCA-GGGTGAAGGTCAATACGGAC-AGACTGGGGTAGCCAAATTAAAAGCAAACTATCAGTTATAAC-TGGCTTGTTAGGGAGTGACTAGTTAGGTTCAAATAGAGCAAAATTGCAAGT------------GTCAGGTAATAGATTTACAAGCATAGATTTTGACTCTGCAGTAATAGGCAATTAAAATCAAAACTCTACTTTTGTACA--GTTGAAATCAGGACC--CGAAAGCCTGTTGACATCTT s rn3.chr15 72301350 525 + 109774626 --TTTCTTTGTAAATGCTGTGTTATGATGGCAATTTCC-TTCTCTTGTTATTTCTCCATCT---------------------TGCTTGTTGGCATATCCTGTCTCTGCGTGTCTCCCTGTGCAAAGGGAGGATATC-------AGTTCTTTACTATAGGCCTTCTAGATTAATGGGAAAGC-AGCTACACTGGAATTTAAGGGTCAGAGTTTTCTTGTGTCTCTGTTAACA-TTGCCTAA-GGGATTCTTTCCTCTGCAGAAATTTCACGTTCAATCATAGCATACTCTGGGGGCATTTGTCATGGTCTTGACAGGTTGGATAAATGGTTAGTTT---AAGCCA-GGGTAAAGGTCAATAAGGACAAGACGGAGGTAGCTAAATTAAAAGCAAACTATC----------CGGCTTGGTATGGAATGACTACTTAGGTTCACATAGAGCAGAATT---GCA---------ATTGTCGGGTAATAGATTTACAAGCATAGATTTTGACTCTGCCGTAATAAGCAATTAAAATCAAAACTCCACATTTGTGAA--GTTAAAATAAGGATC--TGAAAGCCTGTTGTCATCTT s canFam1.chr22 21629984 555 + 64236280 TATTTGTTTTTCAAAGCAATGTGTCATCTGCAATTTCT-TTCTCTATATTTTTGTGTGTGTGATACACATTACTAGATGCTTCGTGTATTGGCACATCCTGTG------TGTCTACATGTATAAAGGTTGCATTTTTTGTTTGTTTTTTTTACTTTAGGTTTTCTAGATTAATGGGAAAACGAAGTAGATTTTCATTTAAGGGTCAGAGTTTTCTGGTGTCTCTCTTAACACTTGCCGAG-GGGATTCTTCCTACTGCAGAAATTTCACATTCAATCACAGCAAACTCTGGGGACATTTGTCATGATCTTGACAGGTTAGATAAATGGTTGGTTA---AAACCATGGGTGAAGGTCAATAAGGACAAGAGTGAGGTAGCTAAATTAAAAGCAAAATACCAATTATAACTCTACTCATTATTGAAAACCTAGCTAAGTTCAAATAAAGCAAAATC---ACT---------AACCTCAGGTTATAGATTTACAAAAGTAGG-TTTGACTCTACAGTAATAGGCAATTAAAATCAAAAGTCTATTTTTGTACAGGGTTATTTTCAGGACC----------TATTGTCATCTT a score=35296.0 s hg17.chr17_random 1448913 87 + 2618010 CCTATCACATATATGATTTGTTGAGCAGGATTGATTAAAAAAAT-GCATTAAGTCAGAA--TAAAAAACAAATTGGAAGGAAAATTAGAG s panTro1.chrUn_random 27501312 88 + 240967748 CCTATCACATATATGATTTGTCGAGCAGGATTGATTAAAAAAATTGCATTAAGTCAGAA--TAAAAAACAAATTGGAAGGAAAATTAGAG s mm5.chr14 81695092 87 + 117079080 CCCATCATATTTATTGTTGACAGAGCAGCATTAATAAAGCAAAA-TATTTAAGATGTAA--CACAACCAAGATGCAAGAGAAAATTAAAG s rn3.chr15 72301875 87 + 109774626 CCCATCATATTTACTGTTGACAGAGGGACATTAATATAACAAAT-TATTAAAGGTGTAA--CAAAACCGAGATGGGAGAGAAAATTAAAG s canFam1.chr22 21630539 89 + 64236280 CCTATCATATTTATGGTAGATTGAACAGGATTAATAAATAAAAT-GAATTAAAGAGGAAACAAAAACCAAGGTACAAAAGAAAATTGAAA s danRer1.chr17 11299920 87 + 35757233 CCAAGGACATAAATAATCTATTGAGCTAAAGTCACAGGTTAAAA-ACTATAAGTTGGAA--TAAAACCCAAAACAAACAATAAATGTTTG a score=1010.0 s hg17.chr17_random 1449000 2 + 2618010 GA s panTro1.chrUn_random 27501400 2 + 240967748 GA s mm5.chr14 81695179 2 + 117079080 GA s canFam1.chr22 21630628 2 + 64236280 GA s danRer1.chr17 11300007 2 + 35757233 CA a score=2525.0 s hg17.chr17_random 1449002 6 + 2618010 GTGCAT s panTro1.chrUn_random 27501402 6 + 240967748 GTGCAT s canFam1.chr22 21630630 6 + 64236280 GTACAT s danRer1.chr17 11300009 6 + 35757233 GTTCAT a score=56618.0 s hg17.chr17_random 1449008 319 + 2618010 GATAAATGAAAAGTAATGAGTCAATTCAAAGTGACTTTTTATTAATTTATGAGTACAGAAGTGTTAGTTCCTTTATTTCTGACTAGAAACTTTTAGCAACAAGTAGAATCTAACTAATGATCCATTTTGCATTATTAAATATGTATTAACCA-CTGTGCTAAGATTATGTCATAGTTC-CTACAGTCACAAAGTATAATCTA-----------ATTAAGTCATTCATTAATTGGAAAAAAAATCATTGTTTTCTTATAAAATACTATCATAGAGAAAACTGGGAGACCAACTTTTaataaatatacaaataaatgaatacattt---------attaatat s panTro1.chrUn_random 27501408 319 + 240967748 GATAAATGAGAAGTATGGAGTCAATTCAAAGTGACTTTTTATTAATTTATGAGTACAGAAGTGTTAGTTCCTTTATTTCTGACTAGAAACTTTTAGCAACAAGTAGAATCTAACTAATGATCCATTTTGCATTATTAAATATGTATTAACCA-CTGTGCTAAGATTATGTCATAGTTC-CTACAGTCACAAAGTATAATCTA-----------ATTAAGTCATTCATTAATTGGAAAAAAAATCATTGTTTTCTTATAAAATACTATCATAGAGAAAACTGGGAGACCAACTTTTaataaatatacaaataaatgaatacattt---------attaatat s canFam1.chr22 21630636 332 + 64236280 GATAAATGAGTACTA-TGAGTGAATTCAAGGTGAATTTTT-TAACCTTTTAAGTACAGAAGTGTTAGCTTCTTTATTTTGGACTTGCAAGTTTTAGCAGCAAGTAGAACATAACTGGTCATTCATTTTACATTATTAAATGTGTATTAATCATTTGTTCAAAGAGCATGTAATAGGTCTCTAAATTAAGAAAGTATAATCTACTGTGAGACACATCCATTCATCCATTAATTGAAAAAAA------TGTGCTTTTATGAAGTCCTTCTATAGGGAAAA-TGGTAGCTTGATTGttaataaatatataaataaataaatttattttatattGCAATTAGTAt a score=118503.0 s hg17.chr17_random 1449327 706 + 2618010 agtgttacatattttgaagaaaattta------gagatattacttatggggtctggtgggatggg-cagcattgtatatagtgcttagagaaggtctttctgaagagctaatgttatttatgagatttaaatggtgagaaagagacagacgtt---------agaagacaagagatttagac--aaagattatctagggcagaggctctaaagcaaggacgaatgacaagaatgtttaaaggaaagatcaaagagcaatgtggAAATGATAGTGTA-------------------TAAGTTATC------------------------------AGCAAAGGTGTT------------------------------------------------------------------------AAGCAC---------------------TCTACAGAGCCTCACTGGCTTGTACCTAAGTAGAAGAT-AGGTAAAACTTTTCTACTCAAGAACACTTGAGTTGATAATTTATGACAAACAGTCAATGACAAAGCAgggtgcaaactattt-----------------tggtaaaatatcagatagtaaaagttttaggcttcattggccaaaaggcaaaattgaggatatcatatgtctgcttatatatcaaacaagaagacacatttccata--tttttgttgaccaaaataaaaaaataataat-------tagact----------tatgaatctactgataaaaacaattgaattctttactgggaaacagcattttgcttaattgagattcagggtttattttacctatcatcaaaattgattgcaaatgcttatctgttaatactcatctataatgaaattttacatattttatctttgaa s panTro1.chrUn_random 27501727 707 + 240967748 agtgttacatattttgaagaaaattta------gagatattacttatggggtctggtgggatggggcagcattgtatatagtgcttagagaaggtctttctggagagctaatgttatttatgagatttaaatggtgagaaagagacagacgtt---------agaagacaagagatttagac--aaagattatctagggcagaggctctaaggcaaggatgaatgacaagaatgtttaaaggaaagatcaaagagcaatgtggAAATGATAGTGTA-------------------TAAGTTATC------------------------------AGCAAAGGTGTT------------------------------------------------------------------------AAGCAC---------------------TCTACAGAGCCTCACTGGCTTGTACCTAAGTAGAAGAT-AGGTAAAACTTTTCTACTCAAGAACACTTGAGTTGATAATTTATGACAAACAGTCAATGACAAAGCAgggtgcaaactattt-----------------tggtaaaatatcagatagtaaaagttttaggcttcattggccaaaaggcaaaattgaggatatcatatgtctgcttatatatcaaaaaagaagacacatttccata--tttttgttgaccaaaataaaaaaataataat-------tagact----------tatgaatctactgataaaaacaattgaattctttactgggaaacagcattttgcttaattgagattcagggtttattttacctatcatcaaaatggattgcaaatgcttatctgttaatactcatctataatgaaattttacatattttatctttgaa s canFam1.chr22 21631142 889 + 64236280 AGCAATTAGTATTTTGAAGAATATTTAAATATGGACATATTATTTGCCGAGACTGGTGGAATGGG-CAGCATTGATTATAGTTCtcagagaatgtctttctgagaagctagtattactt-cgagattgcatttatgagaaagagacagatatttgaataacaggaagataggagattcagacagaaagtttatccaaggtaaaggccctaaggcaaggat-----ctactagtgttt-----aaagacagaagaacaatgtgtaagtagtagtgtaagtagtgtaagtgaagtagtaagttgtctagtgctacaaaatggggtttagaaaagtaggcaaaaaaattcggttaatcaagagtcatatagataataggaaaatgtttagattttattttaagtCTGACACAAGGTTCAAAAAGCACACAAATCATAAAGGCAAGTTGTCTGAAAGATCCTAGTTGTTTGTACCCAAGTAGAAGATCAGGTAAAATTTTCCTAATAAGGAATGTATGAGTTGATAATTTATGATAAACGGTCAATAATAAAAGAAGGTCCAAAGTTTTTGTTTGTTTGTTTGtttcctgaaaaggatcagatagcagaagctct-gactttttgggccaaaagacaaaattgaggatattatagagttgcttccataacaagggagatgacagatttccacaggcttttattggcaaaaaacaaaatacaataataattgagtagacttcttttgtagtacaggtccactaataagaacaatggaattcttcattgaggagtaacaatttacttaagtgggattcatagtttattttacctattaacaaaattgattgtagaaacttatctgttaatactcatctgtaatgagattttacata-ttcatctttgaa a score=27675.0 s hg17.chr17_random 1450033 301 + 2618010 ttttttttttttttttttacatggagtctgactctgttgcccaggctggagtaccgtggtgcaatttcagctcactacagcctctgcctcccgggttccagtaattctcctgcctcagcttccagagcagctgagattacaggcatgcaccactaagcccaggtaattttagtgtttttagtagagacggggctacaccatgctggccaggctggtgtcgaactcctgacctcaggtgatccacctaccttggcctcccaaagtgctaggattacaggaatgagccactgtgcccagcctg s panTro1.chrUn_random 27502434 300 + 240967748 ttttttttttttttttt-acatggagtctcactctgttgcccaggctggagtaccgtggtgcaatttcagctcactacagcctctgcctcccgcgttccagtaattctcctgcctcagcttccagagcagctgagattacaggcatgcaccactaagcccaggtaattttagtgtttttagtagagacggggctacaccatgctggccaggctggtgtcaaactcctgacctcaggtgatccacctaccttggcctcccaaagtgctaggattacaggaatgagccactgtgcccagcctg a score=120024.0 s hg17.chr17_random 1450334 726 + 2618010 ata-ctgtttttaacagagagataccgccaaatattgatatcagttcataagcatattattttaattgaacacacaaaacatttggaag---------gcattctaccagattcttcccttgatatttgccttttagcatatcattatattattatattgcaagagttgtcacttccagttaaaggtgaggtaggagtttctcaattgtataattacattcactttgaaatattaaactttcttttatagctacatcaattttcaagtaccagtcctgaaattgtagtttgaactcag-agaaaatacattttactgcaaatttgcatgggaatgaagaactacctttttgttatagcttatgaaagcacagagagaatgtatagcagattggcattttgctaaatgatttattgtttagttgttgaaattacattatagtagtcaacaattttcatataagcactattttgctttgtaatttttgaattaatt--ttgataaa---tatctacaaatgtttacactaaaagctaatttcaaagcctttcaatgaagtgattgggg-tgattcttctttagaaaaatttcaatcatgtcgatctgtccaaataatta---gtataaaatgttaccactgctaaatgatctaattattatgcaggtaggttaggat-----tcttcaattttccataaaaatatttatagaattgacaatggttacacagacaagaatgaatgaagttcacg s panTro1.chrUn_random 27502734 726 + 240967748 ata-ctgttttaaacagagagataccgccaaatattggtaacagttcataagcatattattttaattgaacacacaaaacatttggatg---------gcattctaccagattcttcccttgatatttgccttttagcatatcattatattactaaattgcaagagttgtcacttccagttaaaggtgaggtaggagtttctcaattgtattattacattcactttgaaatattaaactttcttttatagctacatcaattttcaaataccagtcctgaaattgtagtttgaactcag-agaaaatacattttactgcaaatttgcatgggaatgaagaacaacctttttgttatagcttatgaaagcacagagagaatgtatagcagattggcattttgctaaatgatttattgtttagttattgaaattacattatagtagtcaacaattttcatataagcactattttgctttgtaatttttgaattaatt--ttgataaa---tatctacaaatgtttacactaaaagctaatttcaaagcctttcaatgaagtgattgggg-tgattcttctttagaaaaatttcaatcatgtcgatctgtccaaataatta---gtataaaatgttaccactgctaaatgatctaattattatgcaggtaggttaggat-----tcttcaattttccataaaaatatttatagaattgacaatggttacacagacaagaatgaatgaagttcaca s canFam1.chr22 21632031 717 + 64236280 atatctgtt---aacacagagatgctgccaaatattgatatcagcccacaagcatactattctaatggagcatatgcaacacttggaagacatttatagtattctattaggtttttctcttggtatttgccttttagcatatcattatattgc---------agaataatcactcccaaatgaaggttaggtgggagatcttcaattgtaaagttaaatggattttgaaatatggaaatttcctttacacttaaataaa-ttcaaaaaagcagcactggaactatagtttgaactcaacagaaaatata-tctgctgcaaatttgtatagaaatggaaaataagcttctt----taacatacaacagcagaggaagtatgta-agcagcttgaca-ttagttaaataattca-aatttagttgttgaaataacattactgcagtataagttttgcatataagcgcttttttgctttgtaattttcaaatggattcatttagaaatgttatctgcaaaaattagcagctaaagctaatttcaaagccatttgatgtagtggttggggttggttctcattcggaataatttcacacttggctattgacttaaataactactgctataaaactttaaggctacaaagtgaaccattttgt-----ggtaggtcagggtattcaccttctatttctgac--aaacattcatggaagtgacaatggttgtcc--acaagagtgaatgaTATG---- a score=81875.0 s hg17.chr17_random 1451060 902 + 2618010 tgattaggagattcagactttttttcaactatatgctggtaatagggaatgacaaaagattttatataccttgcattttcacatactataaatttttccaattatgtactttttgatgcacatacatttttaccaccaatatttgtaaaccatcttagcagattccatttccggatgtacgaaattagttttaacttgacatatttgaaaaaattcaagtgagaatattttcacttgaatttttt-ccttgtagactacaaagagaaattaattcttcaaatacttcaaactggtcattaacctactgaaaaatcgatcacagttgaagagtgttaataatacctctcaactcaacaagtaccatgggccaccaccctaagtcatatcctttacttttatttaaaataattatataatattCTGCTCTAAATTTCATCTTGAATGAATTCGATAGCTATTCTTGTATACTTGGCGTATGTCATGCTCCTTTGTTTTTCAACATTGAAATTTCATTTATATCTGGAAAATAAGACTTACCTATGAGGTTAAGGGACTTATATATTGTGAGTTAAGAAAGTCATTTTTAGAAAAATTCCActgggctcggtggctcatgcctgtaatcccagcactttgggaggcagaggcgggtggattatgaggtcaggagttcaagactagcatggacaaaatggtgaaaccccatctcttctaaaaatacaaaaattagccaggcgtggtggcaggcacctctaatcccagctacttgagaggctgaggcagagaattgtgtcaacctgggaggcagaggtttcagtgagccaagactgtgccactgcattccagcctgggtgacagagtgagactccatctcaaaaaaaaaaaaaaaaaaaaaaaaaaaa s panTro1.chrUn_random 27503460 894 + 240967748 tgattaggagattcaaactttttttcaactatatgctggtaatagggaatgacaaaagattttatataccttgcattttcacatactataaatttttccaattatgtactttttgatgcacatacatttttaccaccaatatttgtaaaccatcttagcagattccatttctggatgtacgaaattagttttaacttgacatatttgaaaaaattcaagtgagaatattttcacttgaatttttttccttgtagactacaaagagaaattaattcttcaaatacttcaaactggtcattaacctactgaaaaatcgatcacagttgaagagtgttaataatacctctcaactcaacaagtaccatgggccaccaccctaagtcatatcctttacttttatttaaaataattatataatattctgctctaaatttcatcTTGAATGAATTCGATAGCTATTCTTGTATACTTGGCATATGTCATGCTCCTTTGTTTTTCAACATTGAAATTTCATTTATATCTGGAAAATAAGACTTACCTATGAGGTTAAGGGACTTAT----TGTGAGTTAAGAAAGTCATTTTTAGAAAAATTCCActgggctcggtggctcatgcctgtaatcccagcactttgggaggcagaggcgggtggatcatgaggtcaggagttcaagaccagcatggacaaaatggtgaaaccccatctcttctaaaaatacaaaaattagccaggcgtggtggcaggcacctctaatcccagctacttgagaggctgaggcagagaattgtgtcaacctgggaggcagaggtttcagtgagtcaagactgtgccactgcattccagcctgggtgacagagtgagactccatctcaaaaaaaaaaaaaaaaaaaaaaa----- a score=14173.0 s hg17.chr17_random 1451962 139 + 2618010 TCCACATTCTTAAAATCCAGG-GCAAGTTCCTCTGCTTTAAATTTGGCCATTTGATTCTTTCATATGGGACTTTGTAGCTGGGGCAAGTGATTCAATGGTTTAGAAATAGTTTGAATTTTATTAATGAGTATAGACATTG s panTro1.chrUn_random 27504354 139 + 240967748 TCCACATTCTTAAAATCCAGG-GCAAGTTCCTCTGCTTTAAATCTGGCCATTTGATTCTTTCGTATGGGACTTTGTAGCTGGGGCAAGTGATTCAATGGTTTAGAAATAGTTTGAATTTTATTAATGAGTATAGACATTG s danRer1.chr24 8492794 132 + 23152154 TAAATATTATTGTCTTTCATGCACAAGCT-TTGTTTTTTACAGTTATGCCTTTGTTGATTTTATATAGAGTATTGAATC-----CATATTTTTCAGTATATCGAATATACTGTAAATCTC-TTAATGAAT-TAGACTCTG a score=30294.0 s hg17.chr17_random 1452101 333 + 2618010 TATATAGGAtttttttttttttttttt-gatgcagagtcttgctcttacaacccaggctggagtgtagttgcgccatctcagctcactgcaacctcctcctctcgggttcaagcaattctcctgcctcagcctcccaagtagcttggagtacagggcgcgccaccactcccagataatttttttgtatttttagtggagacaaggtttcac--cacattggacaggatggtctccatctcctgacttcatgatctgcccacctcagcctcccaaagtgctgggattacaggagtgagccaccgcgcctggccTGTATATCAAATTTTTGAAGGAAT s panTro1.chrUn_random 27504493 336 + 240967748 AAAATAGGAtttttttttttttttttttgatgcagagtcttgctcttacaacccaggctggagtgtagttgcgccatctcagctcactgcaacctcctcctctcgggttcaagcgattctcctgcctcagcctcccaagtagcttggagtacagggcgcgccaccactcccagataatttttttgtatttttagtggagacaaggtttcacaccacattggacaggatggtctccatctcctgacttcatgatctgcccacctcagcctcccaaagtgctgggattacaggagtgagccaccgcgcctggccTGTATATCAAATTTTTGAAGGAAT a score=8761.0 s hg17.chr17_random 1452434 90 + 2618010 CTCTATTCTTTTTTAGATATTTTCGAGA------AACA---------------------GCCTTTGGTACTAATGTAAGTATCATGGAACCCATGTAACCAGAATATTTATTTCTCT s panTro1.chrUn_random 27504829 90 + 240967748 CTCTATTCCTTTTTAGATCTTTTCGAGA------CACA---------------------GCCTTTGGTACTAATGTAAGTATCATGGAACCCATGTAACCAGAATATTTATTTCTCT s danRer1.chr24 8492956 117 + 23152154 CTGTACAATTGTCTAAATATTATTGTGAATGATGCACAAGCTTTGTTTTTTACAGTTATGCCTTTGTTGATTTTATATACAGTAATAAATCCATATTTTCAGTATATTGAATACACT a score=26207.0 s hg17.chr17_random 1452524 289 + 2618010 CAGTCAGTATGACATTATCTGATCCACAAAGTATAAAGACAGGCATTACTAGTAGCCCTTCATCATCAAGTCCACTTAGAGAACCCTATCATAGTCTCTTAAAATTGACTATAATTGTTTTAAGGGAAAGAGAAAAAAGTTCTAGCAGGGCTTCTGTTTTATTCTGCAGAGTGTGTTTATTCCAAAA-AGGGATGTTACTAAAGTAGGATAAGAATATAAATGTTTCCCATGGAGAGATTTTGTATAGAACATCTTCACTGCTCACTTTGGTATAGAGGAGTAAGTCACA s panTro1.chrUn_random 27504919 290 + 240967748 CAGTCAGTATGACACTATCTGATCCACAAAGTATAAAGACAGGCATTACTAGTAGCCCTCCATCATCAAGTCCACTTAGAGAACCCTAACATAGTCTCTTAAAATTGACTATGATTGTTTTAAGGGAAAGAGAAAAAAGTTCTAGCAGGGCTTCTGTTTTATTCTGCAGAGTGTGTTTATTCCAAAACAGGGATGTTACTAAAGTAGGATAAGAATATAAATGTTTCCCATGGAGAGATTTTGTATAGAACATCTTCACTGCTCACTTTGGTATAGAGGAGTAAGTCACA a score=66914.0 s hg17.chr17_random 1452813 391 + 2618010 AGGTTAGGACCTATACCAATAAATAAACAATGGCAAATAAATGCACTTGATTCATGTGACATTCACAGATAATAGCCTAAGTTGCATTTTTGTCTTCT------GTAAAATAA---CCATAATTATTGTAAAGAAAACCATCT-TCCAGCTT-----------------TAAAAAATGTGTCTCTCAGGGCCCATTGTAGCCAAGAAT-GCTAGGAGACATAGTTATACCAATGAAATATAAACAAAAAGCGCTGGATAAGCATTTTTAGAATACTCTTTTAAATA-TACCTAATTGACTGGCATGTACTATT------TTTCCCAGGTCTAGAAAATAGGTGCAATATTTAAGTGGAAGAGCCTTTCTCAGACTATGAAGCAACAAACTGCAGTCAAATGGTGGTTGAATATAATTTTATGGAGA s panTro1.chrUn_random 27505209 391 + 240967748 ATGTTAGGACCTATACCAATAAATAAACAATGGCAAATAAATGCACTTGATTCATGTGACATTCACAGATAATAGCCTAAGTTGCATTTTTGTCTTCT------GTAAAATAA---CCATAATTATTGTAAAGAAAACCATCT-TCCAGCTT-----------------TAAAAAATGTGTCTCTCAGGGCCCATTGTAGCCAAGAAT-GCTAGGAGACATAGTTATACCAATGAAATATAAACGAAAAGCACTAGATAAGCATTTTTACAATACTCTTTTAAATA-TACCTAATTGACTGGCATGTACTATT------TTTCCCAGGTCTAGAAAATAGGTGCAATATTTAAGTGGAAGAGCCTTTCTCAGACTATGAAGCAACAAACTGCAGTCAAATGGTGGTTGAATATAATTTTATGGAGA s canFam1.chr22 21632748 423 + 64236280 AAATAAGGGTATATACTAATGTATGTGCAATGGCAGATGAATGCATTAGACCCATGTGGTTTTCACATATAATGTCCTAAGATATATTTTTTCCTTCTCTAGGGGAAAAATAAAACCTTTAATTTTTAGAAAGGTAACAATGTATCCAGCTTAAAAAAAAAAACAAaaaaaaaaaacagatctctcagcttct-ttgcagctaagaatagctaggtgacacagttatgccaatgatacagaagtaaaactcactggatgaggcttttgagaatcctctcttaaataccacacaggtgactggcatgtaccattttgaacttctccagttctggatgacagatgtaatgttgaagtgtaagagccttcctaagaccatgaggcagcaaactgcatgcagaggatggctaa--gtaaTCTTATAGAGA a score=1228.0 s hg17.chr17_random 1453204 13 + 2618010 GTGTAAGGGTTTT s panTro1.chrUn_random 27505600 13 + 240967748 GTGTAAGGGTTTT a score=364.0 s hg17.chr17_random 1503225 4 + 2618010 AAAA s panTro1.chr19 78864153 4 + 82489036 AAAA a score=106821.0 s hg17.chr17_random 1503229 905 + 2618010 CCTTCCCGTTGGCCTTCACCGTCTACTTAACGAGCCACGCCCCTCCTAGGACACCGCAAGAGAAATGCTGGGGTCACCCCTGGCCGAGGCCTCCCTCCTGCTGGCCACACGTAAGAAAGGACTTCACAAGGGAGACCTCCGTGGCTGCCACACACATTCACCCCAAATGCTTCCTGGAGAAAGCACCTGCCCTCACACTGTGAGCTCGTGAGTTTGCCAAAAAGGAGATGCAGGAGCCTGAGATCACCTCCTGTCTTGCTGCTAAAATATCCCAGCCGTGGAAAAGCAAGGCTGGCCTCAAATTGGGGAATCTGGTCTTGCCAGCCCAGCTGTGCTCCAGGGACTCCGGTTTGCATTGGGAATGAGAGAGTGTTGGCCGGGTAAGATGGCAAGACAGACACAGTCCTCCTACAGACTTGTAGAAGGGCTTTC--TGCCCGCCCCCACCCAGGG--CAGAAAGAGGAGGCACAGGGGAAAACAACAAGAGCCCTGGCCAAGAATGAGCCCTCTGCCGTCGTCCTGTGT------GTGGCCTTGTGGCCCAGCACCAGCGCTGGGGGGNCACTTTGCCCTGCCTGACAGGAGGAAGGGATGCCCTAGT-GAGGTGGGAAACAGAGGGA----GAGGTTGAGACCACCTTGGACAAGAAGGGCCAGGGAAGGCCCTNCCNTCACCTGTCA-CTACAGCCCGACACTTAGAAGGTACCGCCTGATTTCAGCCTCTGCATCCACGGTCA------CCTACTAAGTACCCCCCATAGGTAGGGGTTGGCTCCTGCCTTTCCCAGGAGGGAGGACAGACTCACCCTGTGGCCAGCAGGGAGCAGACACCCCCA--AAAGCCACTGGGGCTGCAGGGCCCCCAAAGTGGAAATGACCTGCCACTCTGTCCATCCCATGGGGGAGAAACAATCAGACC s panTro1.chr19 78864157 902 + 82489036 CCTTCCCGTTGGCCTTCACCGTCTACTTAATGAGCCACGCCCCTCCTAGGACACTGCAAGAGAAATGCTGGGGTCACCCCTGGCCAAGGCCTCCCTCCTGCTGGCCACACGTAAGAAAGGACTTCACAAGGGAGACCTCCGTGGCTGCCACACACATTCACCCCAAATGCTTCCTGGAGAAAGCACCTGCCCTCACACTGCGAGCTCATGAGTTTGCCAAAAAGGAGATGCAGGAGCCTGAGATCACCTCCTGTCTTGCTGCTAAAATATCCCAGCCGTGGAAAAGCAAGGCTGGCCTCAAATTGGGGAATCTGGTCTTGCCAGCCCAGCTGTGCTCCAGGGACTCCGGTTTGCATTGGGAATGAGAGAGTGTTGGCCGGGTAAGATGGCAAGACAGACACAGTCCTCCTACAGACTTGTAGAAGGGCTTTC--TGCCCGCCCCCACCCAGGG--CAGAAAGAGGAGGCACAAGGGAAAACAACAAGAGCCCTGGCCAAGAATGAGCCCTCTGCCGTCGTCCTGTGT------GTGGCCTTGTGGCCCAGCACCAGTGCTGGGGGG-CACTTTGCCATGCCTGACAGGAGGAAGGGATGCCCTAGT-GAGGTGGGAAACAGAGGGA----GAGGTTGAGACCACCTTGGACAAGAAGGGCCAGGGAAGGCCTTTC--TCACCTGTCA-CTACAGCTCGACACTTAGAAGGTACCGCCTGATTTCAGCCTCTGTATCCACGGTCA------CCTACTAAGTACCCCCCATAGGCAGGGGTTGGCTCCTGCCTTTCCCAGGAGGGAGGACAGACTCACCCTGTGGCCAGCAGGGAGCAGACACCCCCA--AAAGTCACTGGGGCTGCAGGGCCCCCAAAGTGGAAATGACCTGCCACTCTGTCCATCCCATGGGGGAGAAACAATCAGACC s mm5.chr11 118566294 748 + 121648857 CCTTCCCGTT-GCTATTGTCACTTACTTAGCATAACAAGCAGCTCCCATGATGCTCCGTGAGAGGTGTACAAGCCAGCTTGGGCCTCACTCTCCTACCTTCCAGCCACA-----------------------GGACCT-----------------ATACAACCCAATTGTTTCCTTCAGAAAATG-CTGCC------------------------ACCAAGATGGTGACACAAGAGAGTGTGTTCGCCACCTG-CTTGCTGCTGAGGTGTCCCTGCTGAGGAGAAACAAGGCCAGCCCAAG---GCGTAACAGGAGCCTGCTGGTAC----------------CTCAAGTTTGTGCTAGCAATGAGTGAGGGCTGGCT-ATTGAGCAGATGAGAGGTATACGGGTCTTCAGCAGACTGG--AGAAGGCTTTCGGTACCTGGCCCTGCTCAGGGGTCAGAAACAAGAGTCACA-----------------CCCCAAAC---------CCCTCTGCAGTC-CCCCATGTTACTGAGTGGCCTCAAAGCTCGGCATCAGCCCATGAGGA----------------------GGGATGAGATGCCCCAGCAGTGGTGTGGAGTAGAAAGACTAGAAGGTT-------CTTTGCAC-AGGAGACCCCAGGAAGGCCC-----TCATTTGTCACCTAAGTCCCCCTACCTGGAATGTGTCCCCTGGCTCCACCTGGTGCGCCCACTATCACACCACCCTGCTGAGTGTCCCACATGGG----------------------CTGGAAAGAAAATCAGCTTCACCAAGTGGTCAACAGG----AAACCCCACCACCACCGCCAC-GAAACTACAGAGTCCCCAGTCCAAAAGTGACCAGCCACTCAGCCTTTCA---GGGGAATAGGCAACCTGACT a score=152509.0 s hg17.chr17_random 1504134 1206 + 2618010 CTA-GGCAGGGGGCATTTAGGGCAAACAGCTGGCCCACAGCACGGACTCTCCNTCTTTGCAGCTAATTTTTNGGACTGCATGGGCCACATCTGNGGC---------------------------------CCTGGGACTTCCCATGGAGCCGCGGCAGGTAGAAGGATGG---AACCCCACAATCTGAAGAGCAGA-GAGGAGCCTGATCAGAAGGAGTC-----TTGGCTTCTTTATTCCTCCTTGACCCACCCTCTTTCCACCATCCCTCACTAGCAATTCTCCCCAAAATCCTGCTGCAGAAATCTGCCTTCCAATAACATTGCCTGGGCAGAAGCCACAGGAGCAGGAGCGCTGCCTGCTGGAGGGTGACCAACAGGTGCAGGG-GCCTCAGG--TGCCACTGCCTTTACACACGTGGCCA-GTACAAAAGAGCACTCCAGGAGGAAGGTGGTGGCAATGCAGAGATGACCGTGcacatgcacacatgcacacgtgcacacatgcacacacacgctcatgcacatgcacacacatacatgcacacatgtgcacacatacatgcacatgtgcgcgcacacacacacacatgcacacgcgcacacacCCTCCTCGTTGTTAAGGACCTTAACTTAGAATGATGTATTCTCTGTTCTCCTGGCTATAATTATTTTAGCGTGGGAGACAAATTCTGTCTCCAGCATCTCCGAAGTGCAATGTTGGAAAATCACATCCCATGGTCCTGGAAGATCCCTACCTTCTCCAGCTCTTTTCCTCC-----ACAGAGGAGCATAAACAGACCCTTCCAAGGGGTGAACCT-----------------TGGAGGCTTTAATTCCTNCCTCCAAGCAGCTCCACGTAGAG-CAACAGAGAC---------GCAGGGACCGTGCAAGTAACCATGGCAACTCCAGG-AAGTTTAAAAA------AATAAGTTTTTGAGT-TGTTGAGTTGTTATTTGGTGCTTA-GTGGGTTGGACTCTTGCCNTTCCTTTTTGAGATAAC-GAGGCCTCTGAATGGTGCTTTTAATGAGCTTTGTGGGTACCGTATGGAAGG--CAGCCCGTG-----TCCCCAGA-ATCTCATGACCTTTGAAGGGGGAANGCAAGTGTCTCATCTCAGTTCCACAGAGTCCCAGGC---AGGTCTGTCCTCAGATTAGGTTGCTC-CCTGTGGGGTGATCTTGAGCCAGTGTGGCCCCTCCCCAACNCNTTCCACCCAC-CCACAGAAGTGAGAAGTGCTCCATGC----CTCCCCCTCCCCAGGAGACCCAACATTT s panTro1.chr19 78865059 1198 + 82489036 CTA-GGCAGGGGGCATTTAGGGCAAACAGCTGGCCCATAGCACGGACTCTCC-TCTTTGCAGCTAATTTTT-GGACTGCATGGGCCACATCTG-GGC---------------------------------CCTGGGACTTCCCATGGAGCCGCGGCAGGTAGGAGGATGG---AACCCCACAATCTGAAGAGCAGA-GAGGAGCCTGATCAGAAGGAGTC-----TTGGCTTCTTTATTCCTCCTTGACCCACCCTCTTTCAACCATCCCTCACTAGCAATTCTCCCCAAAATCCTGCTGCAGAAATCTGCCTTCCAATAGCATTGCCTGGACACAAGCCACAGGAGCAGGAGCGCTGCCTGCTGGAGGGTGACCAACAGGTGCAGGG-GCCTCAGG--TGCCACTGCCTTTATACACGTGGCCA-GTACAAAAGAGCACTCCAGGAGGAAGGTGGTGGCAATGCAGAGACGACCGTGCACTTGcacacatgcacacgcacacacatgcacacacacgctcatgcacatgcacacacatacatgcacacatgtgcacacatacatgcacatgtgtgtgcacacacacata--tgcacatgcgcacacacCCTCCTCGTTGTTAAGGACCTTAACTTAGAATGATGTATTCTCTGTTCTCCTGGCTATAATTATTTTAGCGTGGGAGACAAATTCTGTCTCCAGCATCTCCGAAGTGCAATGTTGGAAAATCACATCCCATGGTCCTGGAAGATCCCTACCTTCTCCAGCTCTTTTCCTCC-----ACAGAGGAGCATAAACAGACCCTTCCAAGGGGTGAACCT-----------------TGGAGGCTTTAATTCCT-CCTCCAAGAAGCTCCACGTAGAG-CAACAGAGAC---------GCAGTGACCGTGCAAGTAACCATGGCAACTCCAGGGAAGTTTAAAAA------AATAAGTTTTTGAGTGTGTTGAGTTGTTATTTGGTGCTTA-GTGGGTTGGACTCTTGCC-TTCCGTTTTGAGATAAC-AAGGCCTCTGAATGGTGCTTTTAATGAGCTTTGTGGGTACCGTATGGAAGG--CAGCCCGTG-----TACCCAGA-ATCTCATGACCTTTGAAGGGGGAA-GCAAGTGTCTCATCTCAGTTCCACAGAGTCCCAGGC---AGGTCTGTCCTCAGATTAGGTTGCTC-CCTGTGGGATGACCTTGAGCCAGTGTGGCCCCTCCCCAACC--TTCCACCCAC-CAACAGAAGTGAGAAGTGCTCCATGC----CTCCCCCTCCCCAGGAGACCCAACATTT s mm5.chr11 118567042 909 + 121648857 CCATGACATGGCACAT---GGGTGA--AGACTGTCTGTA-CCTGGCCTCTTC-TCCATGTGGCTGGTCACATAGGTATTGTGTGTGATATATG-AGCATATATAGGAATATGCTTACACAATATAAATATCCTGGGCTCCCGCACTGAACTTCAGCAGAGAGGATCATGGTGAAATCTCAT----------GCAGG-AAGAAGCCAAGCCA-AAGGGGTCCTGG-TTGGCTTCCT--------------------------------------------------------GTTCTGCCCCGGAAAGGCCTTGTCAAAGAGCACTGGCTCAGCAC-AGCTGCA-TAGCAG-------GCCTGCTGGAGCGAG-CCAACAGGTGTGGGGTGCCTCGGG--TACTATTGCCCCAGCAGGTATAATC--------------------------AGGTGCCAGCAA-GCGGAG-------------------------------TACTGAGGTACAAA---------------GCCAACAGAGACAGCCTCACATAGGCACGT-----------------------------------------------CGCCCTC----TTGTTAAAGGCCTTAACTTA----------------GTTCTCCTGGCTATAATTATTTTAGCGTGGGAGATCAGTTCTGTCTCCAGAATC----------------------TCACACTCCAAGGTCCTGGAAAATCCCCA--TTCTCCAGTTCCTTCCCTCCGTGCAAGAGCTGAGCAGGGACAGAT--------GAAGGGGGCCT--------------GGATGAAAGGCTTAATTCCT-ACCCGATG--GCTTCCCTCAGAG-CAGGAGAGACCCGGCCGCTGCACGGGCCTTTCGAGTAACCATGGTAACTTGGGG-GAGCTTAAAAC------AATAAGTTTCTGAGT---TTGGG--GTTATCCAGTGCTTC-CGTGGCTAGGTGCCAGCT-TTCC---TTAAGATAACAGAGCCCCCCAAGTAACACTTTCGG-GAGCACCGAGGGGACAGTATACAAGGAACAGCCTCTACCTGCTCCCCA------CCATGCCTTC------------AGCAGTGTCTTACCTTGAGTACACACACACACACAC---ACACACACACACA------------------------------------------------------------CACACACACACCAAAAATAAAAA-------------------------CAAAGAAACAAAACGACA s canFam1.chr18 28774625 1080 + 66173745 CCA-AGCAGGG--CAT-CAGGGTGAACGCTTCGCCTACAGCCTGGGCCCTGC-CCTTTTCTGCTGGTGTTCTGGACA-CAGAGGCTGAGCCTGCAGA---------------------------------TAGGAGA------AAGGTGCCTCTGCCCAT----TCCGAG---GGCCCCGCTCTCTGAGGGGCAGACGAAGAATCTGGCCGGAAGGAATCCCGGCCTGACTTCTTTCTCCTACCTGGGTCCACTCTTATCCCACCTTCC----CTATTGGTTCTCAAAACAATCCC-CTGCAGAAA------TTCTGATAGCATGGTCTGGGCATGTGCCATG----CAG-----------------------GCAACAGGTGCGGGGATGCTCGGGGTTGCGGCTGTTCTCACACGCCTGGCCAGGCGCACGTGTGTGCTCCCCAAAGAAGCCAGAGCCTATGCAGGA----------------------GCTGAAGCACGCACGCGCACACTCTCTCTCTCTcacatacacaca------------------------------------------cacacacacaca----------cacacacacacTCCTCGCTGTTAAGGACC------CAGAATGATGTATTCTCTGTTCTCCCAGCTATAATTATTTTAGCGTGGGAGACAAATTCTGTCTCCAGTAACTCAGAAGCGCTACATTAGAATATCACATTCTGTGGTCTTGGAAAATCTGTATAGTATCCCAGCCCCTTCCTCC-----ATCCTGGGGCACAAAGAGGCTCTTCAGATGGGTGAACACACCACGGAGGCCCAGCACAGAGGGCTTCACGCCT-GCTCCAAGCCGATCTACTTAGAGACCTCGGAACC---------ACA-----CATGCAGGTAACCATGGCAACTTTGGGGAAGTTAAAAAAAATAATAATAAGTTTGTGAGT-TGTTG-GTTGTTATTTGGTGCCTAGGTGGGTTGGGTTCTCTCC-TTCTTTTTAAAGATAAC-AAGGTCCCTGAATCACACTTCTCT-GAGTGTTTTGGGTA-AGCGTCCAAGG--CAGCAGCTG-----CCTCCAGACGTTTAATTACCTTCTGAGGGGGAA-GCACGTGTCACGTCTGAGCACCAC--TGTCACAAGTCTGGGTTCTGTCCTCAGGGCGGGTTGTTCTCCAATGGGGTGACCTTGGGCCAGCGTG---CCTCCCGAGTG--------TCAC---------------AGTGCCCCTCTCAGCACTGCTCCTCCCTAGAAGTCTGGAGACTA a score=0.0 s hg17.chr17_random 1505340 30 + 2618010 ACAGGAACTCTTACAGTGCCCAGCTACTCT a score=1446.0 s hg17.chr17_random 1505340 5 + 2618010 ACAGG s panTro1.chr19 78866257 5 + 82489036 ACAGG s mm5.chr11 118567951 5 + 121648857 ACAGG a score=2383.0 s hg17.chr17_random 1505345 25 + 2618010 AACTCTTACAGTGCCCAGCTACTCT s panTro1.chr19 78866262 25 + 82489036 AACTCTTACAGTGCCCAGCTACTCT a score=11635.0 s hg17.chr17_random 1505370 110 + 2618010 GCAATCCAGATCCACCAGGATCCCA-AATATTCATCCCAAGACACCCACGGGGGCAAGTTTCCACGCACGCATCTCCTAAGTGGGGGAAGAGGGTCAGGCTACCCCTGCGA s panTro1.chr19 78866287 110 + 82489036 GCAATCCAGATCCACCAGGATCCCA-AATATTCATCCCAAGACACCCACGGGGGCAAGTTTCCATGCACGCATCTCCTAAGTGGGGGAAGAGGGTCAGGCTACCCCTGCGA s canFam1.chr18 28775705 86 + 66173745 GCAATCCAGTTCCCTCTGGGTCCCAGGATATCACTCACACATTGTCCTCTGTGGGGAGCCCCCCCACC----------------------AGAGCC---CAATCCCTGCAC a score=510465.0 s hg17.chr17_random 1505480 2881 + 2618010 ACATACTAATATGCTGGCCAGCACGCATNGTGTAGGTGCAC-------NAGGAGACCCGTGC---AACTCCACCCCCGCACGACACGACCCCACTGCCCACACTCGGAGATTCTCAGGGTCCCTTGAAGGGTCCAGCTGGCCTTGGTGGAGGCGAATGGGAGCCGCTGTCCTGGG-GTCAGCCCTTCTCTGTGCAGGCCACAGCAGCAGGTGTTCTGTGCCAAAGGTCATCCTCGCGTGTGCCGATGG-GGTGTACATGTGCTCA---CACAGGCACAAAAGCACGCACGCTGCTATTCGTGCCGTGACC--------GTGAAGCCACCGCAGCAGGCCACGTCCTGCGGCTCCCAAGGGCAGGCTGCCTTGACCACCCACTG-AGCACCTCCGA-CAGAACCATGGCGGAGCCGCAGCC----CCCC--------------AACAA----GAGTTTG-----------TTGCAGGTTGGTGCCGGGAGAGCTGAGGAGTGCTTG--------------------GGCCACAGCTGC--AGAGGCAAAGGGCTGGGCTACCTGGCTGGGGAAAAANGNGAATATTTTCTTAAAGGGAGAAAAATCCTAAATGGTCC-TCGCAGTCTCTTGGCACACATAATTGTAGTATCCAAGTTAATGAAAGGCCTGGCACATG---NGGCTGAGTCACAGCAAATGCCTGGCCCTGCACCTCACATGCAGCAGCTC----------GTAGAAATCAGACGATGGCGGGCAGGGGGCAGGGGGGG----------------------CCCAGGAAATAAAGAGCATTTCCAGGAATGGCAAGTCTCCCACGCGGGATCATATCATCAATTAGCCAGTGGGAGGGCCGAGGAGTGC-TGGCATCTCATTTCCACAAAGACAAAGTTTCCTTGAGGAAATTGCCAGAGTCTTCAAGGTACTGAAATAACACACAGAACAAATGAAGAAGGACGGCCGCAGGGCTTGGTGGATGCTCAGAAGCCCAGCTCCCGGCAGCCTTGCAGAGGGGCGTGTGTGTTTAAAGACACA-AGTGGAGCCTGCGATGTCCANAGANGGCAAGCACCAGTACCAATACATGacacacacatgtgctcacacatgtac-gacacacatatgctcatgcacgcacacaggtacatgtgggtacaca----aatgcagaaacacacttgtgcatgtgcacatac-atgcacacacatgcacacatacaggatgcacatgcatgcctgtgtgcacactctacacacaggcacatgcatgtacaatctacacgtgtgca--tgtgtgcactgatatgcacgcacctgtgcacacatacatgTGCACAAGC----------------TCTGCTTGCAGGTGGGGGTCCACTATCCTGACTTCCAAACATTCAGGTTTGAGGCTCTTGCAAATGCCAGATACCATGGAGACAAAACGCCCTCTAAACACATTATCC-AGAATTTTCCCTTAATT----CCCTACAGCACATGCCCCATTTGTGAGGAGACCCCCGGGGTCTTCAGGCTCTGACTCTGA--------TGGAGCTCAGAGTATGTCAAACCCTTGAACAGTCCATTCAGGAANCCTTCAAAGCCACACCCCAGGGGGCTCCCACCTCGAAGGCCCNGGGGAAGCAGTCTAGCTCAGCCGTCTAAGTGGAGGTGACTGATTTATTCTGACCATCCTGACTCTTCACGACACTGCTCTCCTCCAACCATGCACGGCTTTAATTGTCCATCAAGCAGGGCAGGGAGGAACCGTAAATCNTTTCCTCCC-GCTGCTCCGAGCTGAGC-CTGCTTGACCTGCAATTGCCAGCCCCTCGCCTGCGTGCAGCCTGGAGAAGTCCGCTGGCTCTGAAGGTGAAGGAGGGGAGTGAGGAAGGGGAACGCAGGAGAGGCAGAA---------GGGGGTCAGGAGGGG-----AACAGAGAGAGCCAGGCAGCAGGAGA----AAGCAAGCAGCCGAC-NATGGCCATGCTCNCCGCTGCTCCCGCCCCNGGGGCCCCTGCGGAGGAATGAATGCCTCAGCCCGACTGCAGCCTCGAGGGGCNCCCGGCTGGGGNCGTCTACACACCTCGCCTCCCAGGCTCCTGCTCTCAAGCAGCGGG------ACCCNTGATAAANGTGAGCCAGACCCTCANGGGAGTCTTGGCA------NTTCCCTTGCCAGGCTATAAAACATCANCAGCCCCAAAAGGAGCCCGCTG--CGGGGGATACTGATTCTCCATCCCACATTCACGGTGTCTGCAACTGGACCCCAGCTAGGGGCACAGGATNCCTCTCTTAGGGTGGGTGTCTCTGTGAGGGCAGGGACAGGCCAGGGGCCACATAGCCCCAGCTGTGGCCGGGAGAACAGAGCTGGTCCAGGAGGTTTAGCCA---CAAGCTCCAAAGCACGCCCCCTTCCCC-TGCAGCAGACTTAATATTTTCTGTAATTTTNAGTATATATTAATGCACTTCAAAGTGGTGAACATTATAGTTATGATTATTACCTAAAGACTTCCTTTATAGCCCNTCATTTTCCAGTGCTCATT-ACTTTCTGAAAAATTATCCTTNGGGGGCTGAAATTTTCCTAGTCTGGTCTTGTGAGTTTTCTTCTTAGGTTTTAAGCAAAACATATC--------------CGGAAGGGGGAGAAATTACTTCTCCCAAAGTCAGTCTCCTTGGTGACTTCTGCCAAGGAAAGAACCCCATG-----------------------------GGAAGGGGGCGG---------GCTGTGTCTTTAGCNATGTAGATACTGATACTGTTATCAGTGATCTGGCCTTAGTTGTGCCCGTCTGTTCTGNGAGAGACGGCTCTATTTTAAAAGTCCAA---------NGAGGC-----GGGGAGGTACCCATGCGACACTCATCTTGCATGCTGCAGCCTGGGCAAGTCAGGAAAGTGAATGCTGGNTTATGGCAATGCTGCCGACGCACACACACAA--GCAGAC--GTATTTTCCNAACACAAAGTGCAGATCTGCAGAAAGTCTCCTGTCTGTGGCCTGGGGATGCCGATAGAGNTTAAAAGCATGCA------------------GATTCTAG------GTGTATCC s panTro1.chr19 78866397 2873 + 82489036 ACATACTAATATGCTGGCCAGCACGCGT-GTGTAGGTGCAC--------AGGAGACCCATGC---AACTCCACCCCCGCATGACACGACCCGACTGCCCACACTCGGAGATCCTCAGGGTCCCTTGAAGAGTCCAGCTGGCCTTGGTGGAGGCGAATGGGAGCCGCTGTCCTGGG-GTCAGCCCTTCTCTGTGCAGGCCACAGCAGCAGGTGTTCTGTGCCAAAGGTCATCCTCGCGTGTGCCGATGG-GGTGTGCATGTGCTCA---CACAGGCACAAAAGCACGCATGCTGCTATTCGTGCTGTGACC--------GTGAAGCCGCCGCAGCAGGCCACGTCCTGCGGCTCCCAAGGTCAGGCTGCCTTGACCACCCGCTG-AGCACCTCCGA-CAGAACCATGGAGGAGCCGCAGCC----CCCC--------------AACAA----GAGTTTG-----------TTGCAGGTTGGTGCCGGGAGAGCTGAGGAGTGCTTG--------------------GGCCACAGCTGC--AGAGGCAAAGGGCTGGGCTACCTGGCTGGGGAAAAAGG--AATATTTTCTTAAAGGGAGAAAAATCCTAAATGGCCC-TCGCAGTCTCTTGGCACTCATAATTGTAGTATCCAAGTTAATGAAAGGCCTGGCACATG----GGCTGAGTCACAGCAAATGCCTGGCCCTGCACCTCACGTGCAGCAGCTC----------GTAGAAATCAGACGATGGCAGGCAGGGGGCCGGGGGGG----------------------CCCAGGAAATAAAGAGCGTTTCCAGGAATGGCAAGTCTCCCACGCGGGATCATATCATCAATTAGCCAGTGGGAGGGCCGAGGAGTGC-TGGCATCTCGTTTCCACAAAGACAAAGTTTCCTTGAGGAAATTGCCAGAGTCTTCAAGGTACTGAAATAACACACAGAACAAATGAAGAAGGACGGCCGCAGGGCTTGGCGGATGCTCAGAAGCCCAGCTCCCGGCAGCCTTGCAGAGGGGCGTGTGTGTTTAAAGACACA-AGTGGAGCCTGCGATGTCCA-AGA-GGCAAGCCCCAGTACCCATACATGacacacacatgtgctcacacatgtac-gacacacatatgctcatgcacacacacaggtacatgtgggtacacacaccaatgcagaaacacacttgtgcacgttcacatac-atgcacacacatgcacacatacaggatgcacatgcatgcctgcgtgcacactctacccacaggcacatgcatgtacaatctacacatgtgcacatgtgtgcactgatatgcacgcacctgtgcacacatacatgtgcacaagcacatgtgtgcaCACGCTCTGCTTGCAGGTGGGGGTCCACTATCCTGACTTCCAAACATTCAGGTTTGAGGCTCTTGCAGATGCCAGGTACCATGGAGACAAAACGCCCTCTAAACACATTATCC-AGAATTTTCCCTTAATT----CCCTACAGCACATGCCCCATTTGTGAGGAGACCCCCGGGGTCTTCAGGCTCTGACTCTGA--------TGGAGCTCAGAGTATGTCAAACCCTTGAACAGTCCATTCAGGAA-CCTTCAAATCCACACCCCAGGGGGCTCCCACCTCGAAGGCCCAGGG-AAGCAGTCTAGCTCAGCCGTCTAAGTGGAGGTGACTGATTTATTCTGACCATCCTGACTCTTCACGACACTGCTCTCCTCCAACCGTGCACGGCTTTAATTGTCCATCAAGCAGGGCAGGGAGGAACCGTAAATC-TTTCCTCCC-GCTGCTCCGAGCTGAGC-CTGCTTGACCTGCAATTGCCAGCCCCTCGCCTGCGTGCAGCCTGGAGAAGTCCGCTGGCTCTGAAGGTGAAGGAGGGGAGTGAGGAAGGGGAACGCAGGAGAGGCAGAA---------GGGGTTCAGGAGGGG-----AACAGAGAGAGCCAGGCAGCAGGAGA----AAGCATGCAGCCGAC--ATGGCCATGCTC-CCGCTGCTCCCGCCCC-GGGGCCCCTGCGGAGGAATGAATGCCTCAGCCCGACTGCAGCCTCGAGGGGC-CCCGGCTGGGG-CGTCTACACACCTCGCCTCCCAGGCTCCTGCTCTCAAGCAGCGGG------ACCC-TGATAAA-GTGAGCCAGACCCTCA-GGGAGTCTTGGCA-------TTCCCTTGCCAGGCTATAAAACATCA-CAGCCCCAAAAGGAGCCCGCTG--CGGGGGATACTGCTTCTCCATCCCGCATTCACGGTGTCTGCAACTGGACCCCAGCTAGGGGCACAGGAT-CCTCTCTTAGGGTGGGTGTCTCTGTGAGGGCAGGGACAGGCCAGGGGCCACATAGCCCCAGCTGTGGCCGGGAGAATAGAGCTGGTCCAGGAGGTTTAGCCA---CAAGCTCCAAAGCACGCCCCCTTCCCC-TGCAGCAGACTTAATATTTTCTGTAATTTT-AGTATATATTAATGCACTTCAAAGTGGTGAACATTATAGTTATGATTATTACCTAAAGACTTCCTTTATAGCCC-TCATTTTCCAGTGCTCATT-ACTTTCTGAAAAATTATCCTT-GGGGGCTGAAATTTTCCTAGTCTGGTCTTGTGAGTTTTCTTCTTAGGTTTTAAGCAAAACATATC--------------CGGAAGGGGGAGAAATTACTTCTCCCAAAGTCAGTCTCCTTGGTGACTTCTGCCAAGGAAAGAACCCCATG-----------------------------GGAAGGGGGCGG---------GCTGTGTCTTTAGC-ATGTAGATACTGATACTGTTATCAGTGATCTGGCCTTAGTTGTGCCCGTCTGTTCTG-GAGAGACGGCTCTATTTTAAAAGTCCAA----------GAGGC-----GGGGAGGTACCCATGCGACACTCATCTTGCATGCTGCAGCCTGGGCAAGTCAGGAAAGTGAATGCTGG-TTATGGCAATGCTGCCGACGCACACACACAA--GCAGAC--GTATTTTCC-AACACAAAGTGCAGATCTGCAGAAAGTCTCCTGTCCGTGGCCCGGGGATGCCGATAGAG-TTAAAAGCATGCA------------------GATTCTAG------GTGTATCC s mm5.chr11 118568204 2482 + 121648857 GCATACTTATATA-------------------------------------------------------------------------------------CATATTAAAAGATTCAAGAGGTCACTGGAAGTGTTCAAGTGGGCTCAGTGACATC-AGTGTGAGCCACTGTCCCAGG-ACCA--CCCTCTTTGAGCAGGGGACAACAGTAAG------------AAGGACACCCTCCCTCCCGCCTGTGGCTGGCTACACCTCCCAAGGCCACATACCCGTAAGTGTGCACACTGCCATCTGTCACAAGA------------GAAACTGTCAGAGCAGGCAGCACTGCACA----CTGAAGTACGACCTCCT----CAGTGGCTGTGGTGTCCGTGG-CTGGACAATGGC--AGGCCCAGCC----CACCCCGTCTGCGCCCTGCACAATGCTGAGTTTA-----------TTGCACACCAACCTTAGGAGA---CAGAACAGCCTG--------------------TGTCATGGCTGCTTCGATGGCCAAGGCTGG-------GGCTGTGAAAAGCGGAAGGATTTTTTTTCAGGGAAGAAAAATCCTACATGGCCC-TTTCAGCCTTTCGGCGCACATAATTGTAGTATCCAAGTTAATGAAAGGCCTGGCCTGCTGGCTGGCTGAATAAGCACTAATGCCACGGCCCGGGCCTCACGGGGAGCAGTTCCATCTCCG-AGTGGAAATCAGACCACAGTGGGGTGGTGGCGGGAGGGGCGGTGGAAGAGGAGGGA---AACACACGGAATAAAGAGCTCTTCCAGGAACGACAAGTCTCCCACGCGGGATCATATTGGTAATTAGCCAGTGGGAGGCCCGCAGAGTGC-TGGCATCTCCTCACCACAAAGACAAAGTTTCCTTGAGGAACCTGCCAGCATCTTCAAGGTACTGAAATAACACACAGAACAAATGGAGAAGAATGACTATAGGGTTTGGTGGCTGCTTAGAAGGCTGGCGGCTGGCGGGCTCACGGAAGGCC------------AGACACGCAGAGAGGTCAAAGGGGCCCA-AGA-G-------------------------------ATGGACTGCCACATATATGGACACACACGATATGATGTATGTGCAC----ACATGCGGGTGCAGG----AACGCACAAGAGATCGTAAACATGCACATGTGCGGTGCCCCCACAAG--------CAGGATGCA----------TGTCCTCACA-TCTGCACACACACACACACATA---------------------TGTGTGCCTT------TACACACCTAGCCACACACATATAC----------------------------CCTGGAGTTGTGG--------------------------------------TTTCGTATTGGCCAGGTGC---AGAGA----------------------ATCCTGGAAATCTCCCTGAGTC----CGC--CAGCGTGAACCATATTAGTAAGAAGA--CACGGGATCTCCAGGCCCCGACTCTGG--------TAGAGTTCAGAGCATGACAGCTTCCCTCACAGTCTCTTCTGGAA-TCTTCCACCCCATGCCAATGGAGGATCCTG-CTTAAAGGCCCTGGG-ATGCAGTCTAGCAGGGCTGTCTAAGTGGAGGTGACGGATTTATTCCAACCGTCCTGCCTCTTAACAACCTCTCTCTCCTCCAAGCCTGCACAGCTTTAATTGTCCATCAGGCAGGTCAGAGCAGAGCTGTAAATC-TTTCCTCCC----------------GG-CTGCTTGACCTCCAACGGCC-GCCCCTCACCAGATCTCA-CCTGGAAA-----GCTGGCTTCGAAGCACAGAGAAGGAAATG-GAGAGGAGGCTTCAGAGGTCACAGAC---------CGGG----GCAGGGGTCACAGATGGGGGGAGCACAGCAGGGGGGGGTCACAGGCAGGAAGGGGACTTAAGGCTGAGCTC-----TGCTGCTGTAACTTAAGATGCTGCAGAGCAACT---------------CTGCAGCT----GGAGT---CTGTCGGGA-----------CCTCTGCTTCCAGGGCACTGGCTGGATACGGCTGGTGCAGTGCCCTTCGAACA-GTCCAAAGAACACT---GGGCCTTGGGGCACCCCAAGTTCCCTTGGCTAGCTGCAAAGCTGAA-CAGTCTAGAA---------------GGGAAATGCTG---------------------------GCAAAGGAGCTTTCCCT--------------GCGCTCCTGGTGTG---------GTGGGGCCTGACACGATCCAAGGACC------TTTCGGGTGT-GTCTAGAGAGCCGAGC---ACCTGGAAGCTCAGCCAACGCAGAGTCTGACGCTCG-CCTCTCTCCC-TCCAACAGCCCAGATATCTTCTGTAATTCC-AATATACGTTAATGTGTCTCAACGTGCTGAGCTGTG-------GATGACTACCCAGA---CTCACTTCTCGACT-TCATTTTCTAGCACTGATTCAGTTTACGGAAAACCATCCTT--GGGGCTTGCGGTTTCCAAGGTAGATCTTGTGTGTCTCCTTCATGGGATTTGAGGGAAACATACCA-------------AGGAATGGGGAGAGATTTGTTTCCTGGAAGACGGGCAGGCTGATG---------GAGAATGGAAATCAGCC-----------------------------TGAAGGAGGGGC---------AC-----CTTCAAC-------GTACAAAACCCGATCTCACCG-------CTTAGC----CCTGTCTGCTCTG-AGGAGAT--CTCAATTTC-AAAGTGGAA---------GTTGGTCTTTAGGGCTGGTGCCCCTGTGACATCCCTAC----TGCTGAAGTACGGATGGGGCAGGAAAGCTAAGGCCAG---------------CCATCACAGAGATGAAA--CTAGACCTGCATTTTCT-AATTTAAG----------GCAACTAGTCTGAAGTCCCTGCCAAGGTGTGGT--ACACAG-TCAAAAGGATGTAGGGTCCCTGTTTGTTCTTGATTTTAAAAAAATGTGTATCT s canFam1.chr18 28775791 2720 + 66173745 --ACAATCACCCC----CCAACACACAC-ACGGGTGTGCACAGAGGGCCAGCAGGCCTGTGCATAAACTCCAGTCCCCCAAAACCATATCC--CTCCCTACACTCAGAAA--CACCAGGTGCCCTCAAAGGGCCCGGTGGCCTCAGTG-----------GGACCACTGGCCTGGGCACCAGTCTTTCCCCATGAAGCCAACA-----AGATTTTCGATGCCAAGAAACACCCTCACGTG----GACGG-GG----CATGTGCACA---TGCATGCATCCACGCATGCACACCTCCACTGGTTCAGTGGCCCGCTCGTGGCCATGCCGGCACGCTAAGTCAGGGTGGGAGGCCACCAAG--CACGCTGCCTTGATTGTGTGCAG-AGCACCTCGGAGCCGAACAATGGTGGAGCCCCGCCCACGGCGCC--------------GGCTG----GAGTTTGCGTGTTGTTTATCACACACGGAAGACGGGCGCACTGGAGAGCTCTTGACGGCCACCGCGAGGCTCCATGTCACAGCTGT--GGTGCCAATGGGCTGGGC-ACACGGCTGCGAAAAAAGG-AATTATTTTTTTTAAGGCAGAAAAATCCTAAATGGCCCTTTTCAGCATTTCTGTGCACATAATTGTAGTATCCAAGTTAATGAAAGGCCTGGCATGCTGGCGGACTGAATACCCGCTAATGCCGCAGCCCGTGCCTCACGTGGAGCGGCTCCAGCACCGTCGTGGAAATCAGACCCCAGTGGGGAGGTGGGAGAGGGCG-----GGCAGGGAGGTGGGAAAAGCGTGCAATAAAGAGCGTTTCTAGGAATGACAGGACTCCCACGCGGGATCATATCATCAATTAGCCAGTGGGAGGGCCGAGCAGCCCTTGGCATCTCATTTCCACAAAGACAAAGTTTCCTTGAGGAAACTGCCAGGGTCTTCAAGGCGCTGAAATAAGACACAGAACAAATGAAGAAGGCCGGA-GCAGGGCCTGGCCAGTACTCAGGCGCCCAGC-CCTGGCA-CCCAGCAGGGGCCCGCGTGGGCTGA-AGACATG-TGTGGAACC-------CCCC-AGT-G------------CCTGAGAGGTGA-----------------GCACGTAC-AACACACGCACGGGCAGGTATGC-----------------------------------------------------CACATGC--TCCGCACACATG---------------------------TGTGTGCACA-----CATGCATCCACAGACACA---------------------CATGTG------------------TGTGCACATATCC----------------------------TCTGCTGTCAGGTCGGGGTCCTCTAGTCTGACCCCCATACATTCTAGTCTGTGGCTTTCCCAG-TGCCAGGTGCTAAGGAGAC-AAACGCCCTGCAAATGTGTTCTCT-AGATTTTGCCCCAAAGTAAGGCCTGACAGCACATCCCCCA------AGTAGACCCCTCGGGTCTTCAGGCCCCAATTCCCCCAACCCCTCGGTGCTCACAGTATGTCAGATCCTCCAACAGTCCATTCTGGAG-CCTTCAAACCTACAACCAAGGGGGCTCCCACCTCAAAGGCCCCGGG-AAGCAGTCCAGCTCAGCCATCTAAGTAGAGGTGACTGATTTATTCTGACCGTCCTGACTCTTAACGACACTGCTCTCCTCCAGCCGTGCATGGCTTTAATTGTCCATCCAGCAGGGCAGGGAGGAACCGTAAATC-TTTCCTCGCGGCTTCTCTGAGCTCAGCGCTGCTTGACCTGCCATTGCCAGCCCCTCCCCTGCATCCC-GCTGGAGAAGTCTGCAGGCTTTgaaggagaagaagggaggaagggggaaggggagcaggagaaagagaaccaggctatggggtcagggagggg-----gagagaggga--tgggcaggaggaCA-------CATGTGGCC-AC--------GTGCTC-TGGCTGCTAATGGGGG-CGGGGCACTGCAGAGGACTCACCG-----------CTGCAGCCTCGAGATGCAACGTGCATGGG--GTGCAGGGACCGCGCCCTCC-GGCCCTAGCTCTCAAGCAGCCCG------ACTC-CAGTAAA-GCA--------------GGGCCT----GCA-------TCCCTTCGCCTTGCTGGAAAACAGCA-CAGCCCTGAAAGGAACCCACTGGAGAGGAAATAATATTTCTCTATCCCATCTGCATTGTGTATGCAACCGAGCCCCATCTGGGGGCACAGGGACCTGCCCATAAG----------------AGACAGGGGCGGGCCACAGGTG-CAGAGCCCCAGACGTGGT------------GCTGGTACAAAAGGCCCAGCCG---CAGGCCCCAAAGCACACCTCCTCCCCCTTCCAGCAGGCTTAAT-TTTTCTGTAATGTT-GGTGTATATTAATGCATTTCGAGGTAGTGCACATCACAGTTATGATTATTACCTAAAGACTTCCTTTACAGCCC-TCA-TTTCTAGCGCTCATT-ACTTTCTGAAAAATTATCCTC-GGGGGCCGAAATTTTCCAAGTCTGGTCTTGTGAGTTTTCTTCTTAGGATCCAAGCAAAACATGTTATTGTGTCCATGATGGGAAGGGGGAGGGGGCTCTTCCTT---AGTTGGTCTCCGTGGTGACACAGAGCCAAGAAAGAATAACATGATAACAGGGCGGGGGGGGGGTGGAGAGGATGAAGGGGGCAGAGACCACACGCTACAGTTCCAAC-ACATAAATACAGACACTGTTATCAATGACCTGGTTTCAGTTTTACCCATCTGTTCTG-TGCAGACACTTCTACTTTTAAAATGAGATTTCAACCTAGGTGC-----AGGGAAGCACCCATGCA-----------------TTTAGCACAGACAAGTCAGGAAAGCAAACACTCA-TCATTGCAACATTGTCAATGCACATTCAGAGTTGCACAC--ATATCATCC-AACTCAAGG-GCAAACTTGCAGAAAGATCCCAGTC-ATAGCCAGGAGACACTGA-AGAG-TCAAAAGAATAAG------------------GATTCTAT------GTGCATTC a score=-31.0 s hg17.chr17_random 1508361 1 + 2618010 T s canFam1.chr18 28778511 1 + 66173745 C a score=91.0 s hg17.chr17_random 1508361 1 + 2618010 T s panTro1.chr19 78869270 1 + 82489036 T a score=186163.0 s hg17.chr17_random 1508362 936 + 2618010 TCTCAGCTGTCCTAGNATGAGATCTGCCGGTGAGAAAGAAAAATGTACCCGCTGGAAGACGGCCTTTAATCATCCTATAAAGTTGTCCCAGACAACGTCACAAG-GCTTTAATGGTAAGGAAAAGGGTAAC-AG-GNCTCCCCCATCAAACACAG--------GCCATCGTCCACCTGCTCTCCCTCCCGCCCTTTGGCCATCAGCTGAAGGTTCCCAGCTGTCAAGATATCAAACAGACTTCTGG-ACGATAAAGCTCGACACAGCGTTGGCTGTCTGGGAGTGTTGATTATAATGTTACGCCACTGACAACAGTAATTCTCACCTTAAATTT--------CTTCTCTTTTCTGCTAAGATTCCAAAATACTTGAATAATGTACCCTTGGATAGCACCCCTGCGAGGAACACAACCAACCACTGTCGGTCTTCTCCCCAGCAGCTGGGGGCACGCAGCCAGGATGGCCGGTGAACCACACGCCCCGTCCCAGGTCTATAAGGAGCCTGTGGAANGCAACCCCTCGGNGTCTCTAGTTCCACTTCACCTGTCCCTGCCGTGAGGCC---------CCCAGCTGTGCCTAATGGCA---------TGACATCAAT----GATAGTCAATACTCCAGAAAGAATAAAAGCACACACTTTGTTTTTTTTTT-CTAATGGGCTTTGCAAAGCTGTGCTTCGGTTTTTCATGGGTTGAGAACTGAGATCC-AAAAACATATATCCACACGGAAGGCAGGGGTGAGCT--GGAATCCCTCAGCCTGCGCGGTAAGNCGATGTGGCAGCAAACTATAGGCTCAGAGGAGCCCGGGAAGGGC--TGGGGGAGGGAGGCCATGATCCTGCTTCCTTTCCTCTCCCTCATGGGAAATCCAACTGGC-ATGGTCTGGAG-CCTCATCTCTGATGATCCAATGCCACTCCCTTTGCAAAAGCAAGAGGACCTGCTGCAGTGCTCCTNCTCTCCTTGAG s panTro1.chr19 78869271 930 + 82489036 TCTCAGCTGTCCTAGGATGAGATCTGCCAGTGAGAAAGAAAAATGTACCCGCTGGAAGACGGCCTTTAATCATCCTATAAAGTTGTCCCAGACAACGTCACAAG-GCTTTAATGGTAAGGAAAAGGGTAAC-AG-G-CTCCCCCATCAAACACAG--------GCCATCGTCTACCTGCTCTCCCTCCCGCCCTCTGGCCATCAGCTGAAGGTTCCCAGCTGTCAAGATATCAAACAGACTTCTGG-ACGATAAAGCTCGACACAGCGTTGGCTGTCTGGGAGTGTTGATTATAATGTTACGCCAGTGGCAACAGTAATTCTCACCTTAAATTT--------CTTCTCTTTTCTGCTAAGATTCCAAAATACTTGAATAATGTACCCTTGGATAGCACCCCTGCGAGGAACACAATCAACCACTGTCGGTCTTCTCCCCAGCAGCTGGGGGCACGCAGCCAGGGAGGCCAGTGAACCACACGCCCCGTCCCAGGTCTATAAGGAGCCTGTGGAA-GCAACCCCTCGG-GTCTCTAGTTCCACTTCACCTGTCCCTGCCATGAGGCC---------CCCAGCTGTGCCTAATGGCA---------TGACATCAAT----GATAGTCAATACTCTAGAAAGAATAAAAGCACACACTTTGTTTTTTTTTTTCTAATGGGCTTTGCAAAGCTGTGCTTCGGTTTTTCATGGGTTGAGAACTGAGATCC-AAAAACATAT--CCACACGGAAGGCAGGGGTGAGCT--GGAATCCCTCAGCCTGCGCGGTAAG-CGATGTGGCAGCAAACTATAGGCTCAGAGGAGCCCGGGAAGGGC--TGGGGGAGGGAGGCCATGATCCTGCTTCCTTTCCTCTCCCTCATGGGAAATCCAACTGGC-ATGGTCTGGAG-CCTCATCTCTGATGATCCAATGCCACTCCCTTTGCAAAAGCAAGAGGACCTGCTGCAGTGCCCCT-CTCTCCTTGAG s mm5.chr11 118570984 842 + 121648857 TCCTAGGTGTCCTAGGATGAGGTGCG-GAGTGAGAAAGAGAAGTAGACACGCTGGCAGACAGCCCT--------CTTGACAGTCGTCTCAGACCCAGAAACCGGAGCTTTATAGATCAGGGAAAG---AAC-AGTGCCCCCACCAACAAACACATCGTCCGTCGGCACCGTCCGGCTTTCGTCCCTCTCTCCC---GGGCACCA-CTGAAGGCATGCAGCTGTCTCGGTATCAAGCGAGCT---------------------GCCTTGTGGGCTGTCAAGGAGTGTTGATTGCAATACTGTGCCGATGACAACCATAATTCTCACCTTAAGTTCCTCTGGTACTTCTCTTTCCTGCTAAGATTCCAAAGTGCTTGACTAATGTACCCTCGGATAGCACCGCCTCGAGG---------CCCCATTACAGGCCCT-----------TAGAGGGAATGCAG--GAGGAAGCCTGAGATCC-CGTG-CCCACCCGCCGTGCACCAACAGCCTGTGTAG-GCAACCCCTGTG-GGC-CTGCTTCCCCCTCGCCTGTCCCTGCATT--AGCCATCCCCCCGCCCAGCTGAGCTTAATGGTA---------TCTTCTCAGTGAGGGAGAGTCAATAACTTAGAGAG---GCGGGCAGGCTCTCTGTTTATTT----CTAATGGGTCTCTCAGAGCTACGCCTTGCTTTTTCATGGGCTGAGTCCTGAGACCCTGAAAACATCT--CCATGCTGTGGG-AGGGGGGAAGT--GGATTCCCTCGGCTTGGGAGGAAA--TGTCTTAGCAGCGACTCATGGGCTC--AGGAGTCCAAGATGA-----TGGGGATAGTGGCCATACTCTATCTTTCTCCCATCTC-------------------GCC-ATGACCGGCAG-CACCCTTTCT------------CCAT--------AAAAAGCCAAAACACCTTCT------TCCCTACCAGCTTCAAA s canFam1.chr18 28778512 873 + 66173745 TCTTAATTGTCCTAGGA-GAGATCTG-CGGTGAGAA--AAAAATGTACTTGCTGGTAG-----------TCATGCTGGAAAGTTGTCCCAGACACCACAGAAGG-GCTTTCGTGGTGAGGGCAAGGGTAACTAGCGGGCTCCCCACCAAACAAAG--------GTCATCATCCAGC--CTCTGACTCCCTGCCCTCGGCCA------GGAGGCT-----------------------GACTTGCGGCACGCTAACACTCGATGTGACGTGGGTTGTCCACGAGCACTG-CTACAATATTACACCACTGAAAATCCTAATCTTCACCTTAGATTTCTCCAGCTCTTCCCTTTTCTGCTAAGATTCCAAAACACTTGACTAATGTACCCGTGGATGGCACCCCTATGAGGCAGGCAGC-GAGCGCTATCAAGTCCATTATGAGCAGCTCGGGGAGCGCAG-CGGCGACGTTGGTGAACCACA-GCCCCATCCCTAGTCTACAAGAAGCCTGTGTAA-GCAGCCCCTGGA-GCC-CCGGTTCCACCTCACCTGTCCCTGCAGTGGGGGC---------CCCAGCGGTGCCTAACAGCACCGCTGTGGTCCCTTCAATGAGGAAGAGTCAATATTCCAGAAAG---ACACACACACTTCATGTTTATTG----CTAATGGTTTCCCCAAAACTATGTTTTGGTTTGTCA------------------CT------CATCT--CGGTACTGAAAGCAGAGGTGGGACAGAGAATCTCTCTGGCTGAGAGTAAA--TGCCATGGTGG-GATCCACAGGTCCAGAGGAGGCTGGGAAGGGTGGTGGTGGGAGTGGGTCATGATGCTTCTTCCTTTCAGCACCACCATGGAAAACCCAGCTGGCAATGACCTAGGGCCCTCAACTCTGAGAATCCAAGGCCACTC---TTACAAAAGCAAAGAGCCCAGCTGCAGTACCCCC-CTAACTGTG-- a score=123.0 s hg17.chr17_random 1509298 2 + 2618010 CT s panTro1.chr19 78870201 2 + 82489036 CT s canFam1.chr18 28779385 2 + 66173745 GT a score=27425.0 s hg17.chr17_random 1509300 312 + 2618010 ACCCtttttttttttttttttttttagggggagtcttgctctgttgcccnagactggagtgcagcggtatgatcttggctcactgcgacctccacctcccaggttcaagtgattctcctgcctcagcctcctgagtagctgggattataggcgtgcaccatcatacccagcgaattttttgtacttttagtatagatggggtttcaccatgttgaccaggctggtgttgagctcctgacctcaggtgattccctgcctcggcctcccaaagtgctgggattacaggcgtgagacaccctgccctggccTCCT s panTro1.chr19 78870203 307 + 82489036 ACTCttttttttttttttttt----agggggagtcttgctctgttgccc-agactggagtgcagcagtatgatcttggctcactgcaacctccacctcccaggttcaagtgattctcctgcctcagcctcctgaatagctgggattataggtgtgcaccatcatacccagtgaattttttgtacttttagtatagatggggtttcaccatgttgaccaggctggtcttgagctcctgacctcaggtgattccctgcctcggcctcccaaagtgctgggattacaggcgtgagacaccctgccctggccTCCT a score=91.0 s hg17.chr17_random 1509611 1 + 2618010 T s canFam1.chr18 28779387 1 + 66173745 T a score=78309.0 s hg17.chr17_random 1509612 587 + 2618010 TGTGGTACTCTTGACACC----CCGCTGGCAGTGGAGGCATGGGGAGAGCACACCGGGCCCATTGAGG---GGACACAGCA----CAGGCAGGAGCCCTGTTATCCCCTGGATGGCCTGACCCGGGTAACAACTGAGTCCACGGCCCCACAGACAGGAC----CTTACTTCTTTCTGCCTGGCTTCGGGGTGTTCCTAAGGACATGAGCTGCTGGGGGCTGCTCCAGGGA-----GCCCTTCCAGGCCACCCAAGGGAGTGAGGGTCCCCTCAGACCCCAACCTC-TCTATAGAGACATGCTAAGGGTTGTTTCCATCCTTACATCTGCAAGTTTATCTTTTAAANGCGAGCTCTATTAAAGCAGCCTCAT--AATTATACCCACAGGGAACAGTTTGGAATCCAT-TCCTTAAC-----------CCTGACCCTTCCGAACCC-TAGCAACATGCTCGTTCCTCTACTAGGTGGATAGCCCCAGGGAAGGGTCCCACTCACCACA----TCAGCGGCTTTACATAG-----ATCGCCTGATCCACGCAGCAGTCCCTGCTTCTCAGCAGGGTAAACTGAGGNTTCCAGAGCCTGCCCTGGGTGGCAAGGCTGGGAAGGGTGCACGCCCTCC s panTro1.chr19 78870510 585 + 82489036 TGTGGTACTCTTGACACC----CCGCTGGCAGTGGAGGCATGGGGAGAGCACACCGGGCCCATTGAGG---GGACACAGCA----CAGGCAGGAGCCCTGTTATCCCCTGGATGGCCTGACCAGGGTAACAACCGAGTCCACGGCCCCACAGACAGGAC----CTTACTTCTTTCTGCCTGGCTTCGGGGTGTTCCTAAGGACATGAGCTGCTGGGGGCTGCTCCAGGGA-----GCCCTTCCAGGCCGCCCAAGGGAGTGAGGGTCCCCTCAGACCCCAACCTC-TCTATAGAGACATGCTAAGGGTTGTTTCCATCCTTGCATCTGCAAGTTTATCTTTTAAA-GCGAGCTCTATTAAAGCAGCATCAT--AATTATACCCACAGGGAACAGTTTGGAATCCAT-TCCTTAAC-----------CCTGACCCTTCCTAACCC-TAGCAACATGCTCGTTCCTCTACTAGGTGGATAGCCCCAGGGAAGGGTCCCGCTCACCACA----TCAGCGGCTTTACATAG-----ATCGCCTGATCCACGCAGCAGTCCCTGCTTCTCAGCAGGGTAAACTGAGG-TTCCAGAGCCTGCCCTGGGTGGCAAGGCTGGGAAGGGTGCACGCCCTCC s mm5.chr11 118571826 537 + 121648857 GGTGGTTTTCTTGAT-CC----CCATCAGGAGTAGAGACCTG-------------AGGTATAACCAGA---GGACATACCAGGGTCAGGCAGGAGCC---TAACCTCTTGGGCAGCATGTCCAAAGTGAC-CCTTAATGCGCAGGTCTTCGGACGGGAC----CTCATATC-TCCTGCCCAGCCACAGGGTGCTCCTGAG--TATGAGCTGCTAGGCTCGAACCTGGAGACACCCACACCCTTAGATCACCAGAACAAGGAAGGGTCGCCCAACATCTCCACCTCACCTATACCGTAACTCCGAGCA----TCCTATGCGAGCACCTGGAAGGTCACC--------CGGAGCTACTTTAAAACAGCCTCAT---CTTGTAAT--CAGGAAATAACTCTGAAGCCAC-TCCTTCATCCCTCATGAGGCCTGGCTCTTCTGTCTCCACAAAAGCAGGCGCCTCCTGCACAGAGGTGGGTGG----------------------TGACG----CCAG----TCTACA----------CCCATGGTCC-TGCTGCGGGCCATG--TCTCAGCTGAGC-ACCAGTGG-CCTCAGAGATTACCATGTGTAATGTGGTTGATAATCTTGTGTCCCCTCC s canFam1.chr18 28779388 533 + 66173745 TGTGAAATTGTGGCCACCCCCACCCCGGGGAGCAGAAGCATGAGGA-AGGACAGGTGGCCCATTGAGGCAACAACATACCATGAGGAAGCAAGAGCCCT-CCATTCTCCCAGTGCCCTGGTCAGAGTGAC-CCCTGGTCCACAGCCCCATGGACAGGACCTGGCTCACGTCCCTCTGCCTGGCC------TGGCTCTGAAAACCTGGGCAGCTGGG--CTGCTCCTGGGG-----ATGCCTCCAGCCCACCCAAGTAAGAAAT-----------------------GCTATAGAGAGATGCTCAG------CCTCATCTTGGCACCTG--------------------GAACCATTTCAAAACCATGTCATCTCCTTGTGGCCATAGGAGACAATGCAGAGTCTGCGTCCTTAAC---------------------------TC-AGACAAGATGTTCATCCCTCTAGTAGGCAGCTGGACC--AGAAAAGGCCACGCTCACTACAGGCTGCTGTGAGCCTACTAAGTGCCAGCTCCTTGCTATGTGCTGCCTCCCCAGC-GCTCAGCTGAGTAAAACG-GG-TTTGAGAGCTTGCTCCG-GCCACGGGGTTGGGAAGTCTGCATTCCCTCC a score=92158.0 s hg17.chr17_random 1510199 733 + 2618010 CCAGCGGTATGCTGCAGGCAAC--CCTGCCACCATCAGAGGNTCAGCTCCGGCCTCAGGCTGTCCCTGCACAGAGCCCGCCCACCAGCCAGCAGGNTGCAGGCCGAATCCACTCACCACACCCACAGGTTGTGCGGCCGGCCCTGATGGGCTTTAAGAGCTCATGAAAGGTAACTGACATACCGCCTTGCTCAGAAGTCACTTC-CATTTCAATGTGCATGTAACTGTGTGTGCCCACGGGCAAAGGGTGATTCTTGTAAGAATCAGCTGATGGGAGTGGGGAGCTGCCAAGATGTACAACCTCAGAACCTCCC-ATGAATAAGGAAACTAACTGAGTGAAGACTCAG-CCACACCTCCAGGGTGAAGGGCAGGTGTCAACACCAAGTCATTAGGCTTTGC-AGAGCCCATCAGGAGCCTGTGCATGGACCCAGTTTAAAGCATATTCTGGGTTTCCTTTTTTTGCTCGGATCTCAAGGTGACGGGTAATGTCGGGACATACCGGTGTGTGCGGCTCTCCCAGGTGATACATTAAAAAGTCATCCTCACACCTCGCTGCTGAAAACAAAAAGCTACAAAGCCCTTCTTGCCANTTGCTTTTTAAAAAgtggggtgggctggggtggggtggggAAGAAGAGGTCACCAGCAGGTGCTTGATTCCAAGGNTGCCCAGAAGCTCTTAGGAACAGACCCNTGGAGCTTCAGCCAGCCCCCAGCCCTC-----AAAAGTTCCAGAAAA s panTro1.chr19 78871095 728 + 82489036 CCAGCGGTATGCTGCAGGCAAC--CCTGCCACCATCAGAGG-TCAGCTCTGGCCTCAGGCTGTCCCTGCACAGAGCCCGCCCAGCAGCCAGCAGG-TGCAGGCCGAATCCACTCACCACAGCCACAGGTTGTGCGGCCGGCCCTGATGGGCTTTAAGAGCTCATGAAAGGCAACTGACATACCTCCTTGCTCAGAAGTCACTTC-CATTTCAATGTGCATGTAACTGTGTGTGCCCACGGGCAAAGGGTGATTCTTGTAAGAATCAGCTGATGGGAGTGGGGAGCTGCCAAGATGTACAACCTCAGAACCTCCC-ATGAATAAGGAAACTAACTGAGTGAAGACTCAG-CCACACCTCCAGGGTGAAGGGCAGGTGTCAACACCAAGTCATTAGGCTTTGC-AGAGCCCATCAGGAGCCTGTGCACGGACCCAGTTTAAAGCATATTCTGGGTTTCCTTTTTTTGCTCGGATCTCAAGGTGACGGGTAATGTCGGGACATACCGGTGTGTGCGGCTCTCCCAGGTGATACATTAAAAAGTCATCCTCACACCTCGCTGCTGAAAACAAAAAGCTACAAAGCCCTTCTTGCCA-TTGCTTTTTAAAAAgtggggtgggctggggtggggtggggAAGAAGAGGTCACCAGCAGGTGCTTGATTCCAAGG-TGCCCAGAAGCTCTTAGGAACAGACCC-TGGAGCTTCAGCCAGCCCCCAGCCCTC-----AAAAGTTCCAGAAAA s canFam1.chr18 28779921 657 + 66173745 -CGAGAACACGCTGCGGTCAGCTACCCCCCACCA----------------AGCCCCAGTGTG---------------------------GGCAGG-CGCTTGCCTCCTCCATGCACTGGGCTGATCAGCAGAGCCGCT-GCTCCAGTGGGC-TCAAGGTCTCCAGAAAGGTAAGAAAGCTACAGCTTTGTTCAAAAGTTGCATAGCATTTCAACATGCATCTAAATGTGCGT-CCTGGAGGTGAAGGGTGCTTCTTCTAC-AATCAGCCCATGGGA----GGAACGCCCGGGATGGGCCATCTCAGGGAATCCCTGTTAACAAGGGGACTGACTAACCAAGGGTTCAGACTAGACCTCCAGGG-ACAGGCCAGGCTGTGAGGATGAATCAGCACGTGCTGCTGGAGTCTGGCAGGAGCCACAACACAACCC-------------ATTCTGATTTTCCTTCCTCTCCTCGGGTC-CAAGGTAATGGGACA---CAGGAAAACCTGGTGTGTGTGGCCATCTCGCGCAAACTACTGGGAAATCATCTTCACACCTC-CTGCTGAAAAC-AAGAGCTACATGGCCCTTCTTGCCA-CTGCCAACAGCAAAGAAAAA------AATATGGGGTTGGGAAGAAGAG---ACCAGCAGGAGCT--GTGCTGAAGGTGCCCGGCTGCTCCTACATA-AGACCC-GGGAGCGGCGTCTTATACCCGAGTCTCAGAAGAAAAGTTCCAGAAGA a score=22618.0 s hg17.chr17_random 1510932 91 + 2618010 ATAGGAGTTGTTTTT-----GATGTAATCCAGGAGAGAAACCTCTAATTTG----CATTAAGAGTTTGGAGCTATGAAAGTTTAGTGAGAAATGATTTCT s panTro1.chr19 78871823 91 + 82489036 ATAGGAGTCGTTTTT-----GATGTAATCCAGGAGAGAAACCTCTAATTTG----CATTAAGAGTTTGGAGCTATGAAAGTTTAGTGAGAAATGATTTCT s mm5.chr11 118573402 100 + 121648857 GTAGAATTTCTTCCTCCCCCTCTTTAATATAGTGAGCAAACCGCCTATCTGAACTCAGTAAGGATTTTAAATTATTAAAGTTTAGTGAGAAAATATTTGT s canFam1.chr18 28780579 93 + 66173745 CTAGGAGTTATTTCC-----TGTTTAATCCAGTAGAGAAACTTCTCATTTATACTCAGTAGGGATTTTAAACTACT--AGTTCAGCGAGAGATTATTTCC a score=4357.0 s hg17.chr17_random 1511023 47 + 2618010 AAAGGTACCAGGGTGTTTGTACTTGCTTTAAATCTTTCTCCAAATTG---- s panTro1.chr19 78871914 47 + 82489036 AAAGGTACCAGGGTGTTTGTACTTGCTTTAAATCTTTCTCCAAATTG---- s mm5.chr11 118573706 39 + 121648857 -----TAAGAAAGCATTTCTAAGTGC---AAATCTTGTCTCAAAATG---- s canFam1.chr18 28780672 51 + 66173745 AAATGTACCTGGGTGTGTGCTCGTTCCTCTTTACCTCCCCAGAGATATCCA a score=105068.0 s hg17.chr17_random 1511070 649 + 2618010 TGGACCTTCCT---AATACAAGGAAACCCTATGTCCTTTGGCTCCAAAAGAGGTTCCCATTTTTCCAT-CAAAAATCTCATTGCTGAGGA-TAGCNCTGCTCCTCCATGTTCTCATGACCGTTGCCTAAAAGCAAACGATCCGGAGACATGA-GCCTGGCCCAGGAATCGGCATTTGCTTGGTGTCCAAGGATGTGAACTGCAGGATGAGAGCAAGGGCAGGAGAAGCACCTGGACTCCAGGGACA-CCATTCCTGCCATCTTCATCCCTGGGTCTCACCTGGTGTCATAGACAAGGAGACGTGGATGAGAAGGACTGCAGTCCATGGTGTTCGGGCTGCTCAAGGGCAGAACTCTGAATGCGCCCTTGGTTTGCGTGGCACACTGCCTCCACTACTGTATTGG-TGGCCCTGC-AGAAGAGAATCTGATCTGGAGGTCCG-GGTTACCTTT-GTTTGTTTGTTTTGATGGAGGGAGAATTTTGGAGCAAGAC-AAGATGCCTT-----------GGCACACAGGATTCTCCGCTCTGGCACAAAAGATA--CATGTTATGATCTCAACTG----------GGCCCCCAAA----CAAGGACT----TGAAACTGTTCAGGGGCTGGCTGGTGGCAGCTTTCTATGCTCAGGCAGTTTCCTTGCCTGCAAATGGGATTATTTTCTAAAAGGG s panTro1.chr19 78871961 643 + 82489036 TGGACCTTCCT---AATACAAGGAAACCCTATGT-----GGCTCCAAAAGAGGTTCCCATTTTTCCAT-CAAAAATCTCATTGCTGAGGA-TAGC-CTGCTCCTCCATGTTCTCATGACCGTTGCCTAAAAGCAAACGATCCGGAGACATGA-GCCTGGCCCAGGAATCGGCATTTGCTTGGTGTCCAAGGATGTGAACTGCAGGATGAGAGCAAGGGCAGGAGAAGCACCTCGACTCCAGGGACA-CCATTCCTGCCATCTTCATCCCTGGGTCTCACCTGGTGTCATAGACAAGGAGACGTGGATGAGAAGGACTGCAGTCCATGGTGTTCGGGCTGCTCAAGGGCAGAACTCTGAATGTGCCCTTGGTTTGCGTGGCACACTGCCTCCACTACTGTATTGG-TGGCCCTGC-AGAAGAGAATCTGATCTGGAGGTCTG-GGTTACCTTT-GTTTGTTTGTTTTGATGGAGGGAGAATTTTGGAGCAAGAC-AAGATGCCTT-----------GGCACACAGGATTCTCCTCTCTGGCACAAAAGATA--CATGTTATGATCTCAACTG----------GGCCCCCACA----CAAGGACT----TGAAACTGTTCAGGGGCTGGCTGGTGGCAGCTCTCTATGCTCAGGCAGTTTCCTTGCCTGCAAATGGGATTATTTTCTAAAAGGG s mm5.chr11 118573973 538 + 121648857 CTGTCCTTCTTAAAAACACATGTGAAGCTCATGTCTTTGGGCTTCAGTGGG-----------TTTTAT-AGAGAGCCTCAT--CTGAAGAGCAGC-CAGCTTGTC--TGTCCTCATTTCCCTTGCCTGAGAGAAAATGCTTCTGGTTCAAG--GCCCAGTGCATGAAGCACTATTTTCCCAGTACTTAA-GATGTGCATT-----CTGAAAGCAGTG-----------------------GGGACAGCTACCCCTGCTGCCTTCAT------------CCTGGTAACAGGGACAGGGGGACATCAGTGAGCAGAGCCACAGCCCTTGGTATCTGAGGTGCTCACAGTCAGAAATCTGAATGGATCTTGGGTCTGCGTG--------------CAACTGTCTCAT-ATGCCCAGC-AGTGAGAAACCTAGTTTGCTAGTGTGAGGTCAC-------------------ACATAGGGAG-ATTTTAAAGTGAGAC-CAGGTGCCTT--------------------------------TGAAAAAAAAGGCACCCAGGTCA-GTTCCCCAT--------------CCCCCACCGTATCAAGG--------GAATCCACAGAGAGATGGA--GGTAGCGCCTGTCTGGACGCAGGCAGTTTCTTTACCTGTAAACAGGACTGGTTTCTAAGAAAA s canFam1.chr18 28780723 603 + 66173745 -TGCACTTTTT---AATAGAACTAAACTTGATGTTCCTTGGCCTTCACAGAGGTTCCCCTTTCTGCACACAGAGGCTTCAGTGCTGAGAA-CGG--TGTCTTCTCTGTGCTCTCATTATCCTGGCCTACAAGAAAGCTCTCCTGAGACATGATACCCAGCCCAGGAATCACCAGTCACCT------------------------------------------------------------GGGGCA-CGG--------ATCGTCATCCCTCGGTCTCATTTGCTGTCACAGACAAGGAGACATCGGTGAGCAGGGCTGCA-------GTGTTCCAGATATTCAAAGGGAGACCTCCGAATGTGCCCTAGGCTTGTGTACTACGCTGCCCACACAACTGTAATGACCTGCCCTGTGAGAAGGGATTTTTTTGGAGGGGACTG-TGTTACTTTTAGCTTATTTGTTTCAGTAGAAGGACAATTTTGAACTGAAACTAAGATGTCTCAGAGAAATCAAGGCACACA-GATTCTCCTGTTATGTAGAGAAGATA--GAAGTTATGATCTTGTCTGCCTGCACCCCGCCCCCCACCGCCAAAAGGAACCTGATGTAACTGTGCAGAGCCTGGCTGCTAGCAGGTGCCT--GCCCCAGCAGTTCCCTCACCTGCAAGTGGGACTCTTTTCTAAAAGGG a score=26127.0 s hg17.chr17_random 1511719 188 + 2618010 CTAAAATAGACATACCCGGCCACCTTCCTCGCCAGCTGGCTTCCACTCACAGCCCAGCGTT---CAAGGCAGGGTGGGCT---CACCTCCCCAAATATGGAGCAGCCAGCCAAGCAGAGACCTGCGCATAC-AGAGCTGATGACCAGCGGNTGGGTCCAGTAGGGAG------ACGGCCAGGTACAGAGCGGTTGCTCCGC s panTro1.chr19 78872604 187 + 82489036 CTAAAATAGACATACCCGGCCACCTTCCTCGCCAGCTGGCTTCCACTCACAGCCCAGTGTT---CAAGGAAGGGTGGGCT---CACCTCCCCAAATATGGAGCAGCCAGCCAAGCAGGGACCTGCGCATAC-AGAGCTGATGACCAGCGG-TGGGTCCAGTAGGGAG------ACGGCCAGGTACAGAGCGGTTGCTCCGC s canFam1.chr18 28781326 197 + 66173745 CTGAAGTAGACATACCTGAGCACCTGCCTCTCCTCCTGGTTGCTAATCACTGTCCAGCGCTACGCTGGACCAGAAGAGCTAGCCACTCCCTGCAGCACTCAGCAGACA-CCTGGCGGACACCTGCACACACAAGTACTGATGACCATGAC-AGGATCTCAGAAGGAGCCTGGCATGGCCAGGTAC--AACAGTGGCTTCAC a score=36873.0 s hg17.chr17_random 1511907 163 + 2618010 CTAGGCCTCTGTTCTTCTGGAGTCTTGGGAGAAAGCTCTCAGCACAGCCGCTAACCAAAGCAATAAGCAAGTAAATTCCTGCTAAAAATACATATAT--TCTTCCTCTTTCTTTTTTCTGCTGGGAATATGTTCTGAGCACAAATAATTAAACCTTAAAAGAAAA s panTro1.chr19 78872791 163 + 82489036 CTAGGCCTCTGTTCTTCTGGAGTCTTGGGAGAAAGCTCTCAGCACAGCCGCTAACCAAAGCAATAAGCAAGTAAATTCCTGCTAAAAATACAGATAT--TCTTCCTCTTTCTTTTTTCTGCTGGGAATATGTTCTGAGCACAAATAATTAAACCTTAAAAGAAAA s mm5.chr11 118574939 149 + 121648857 CCGTGCTCCTGTCCCT---GAGACCCCGGTGAAAGGTCTCAGTCCGTACAAGGAGCAAAGCCGTAAGTGGGCAAAACAGTTCTAGAAATGTGCA-------------CTGGATACTTCGGCTAGGAATGTGCCCTGACCTGAGATAATGGGATCTGGAAGAAGAA s canFam1.chr18 28781523 164 + 66173745 CCATGCCCCTGTTTTTGTAGAACCTTGGGAGGAAGATCTCAGTAGAGCCACTAACCAACGCAGTAAGTGGATGAAGTTCTGCTAAAAACACATATATCCTCCCCCTCCCATTTTTTTCTGCTAAGACTATGCTCTGGCTTTAGAC-ACTAAACCTTAAAATATAt a score=300.0 s hg17.chr17_random 1512070 1 + 2618010 C s panTro1.chr19 78872954 1 + 82489036 C s mm5.chr11 118575088 1 + 121648857 C a score=32392.0 s hg17.chr17_random 1512071 163 + 2618010 TTGCAGTAGCAAGTGCTTGGCTCTTGGTCCTAAGAGGAAACCACGGAGGCTGAGGA--------CCCCCAAC-TCA---AGTTGACGCCAGCAAGTTACAAC--------------CCACCTCTCAGGTGGAACCCACGAGCCCTGGCCCCAACCTACACGGAAGGAGTGGAGAC-GGATCCAAGGGAAG s panTro1.chr19 78872955 163 + 82489036 TTGCAGTAGCAAGTGCTTGGCTCTTGGTCCTAAGAGGATACCACGGAGGCTGAGGA--------CCCCCAAC-TCA---AGTTGACGCCAGCAAGTTACAAC--------------CCACCTCTCAGGTGGAACCCACGAGACCTGGCCCCAACCTACACGGAAGGAGTGGAGAC-GGATCCAAGGGAAG s mm5.chr11 118575089 173 + 121648857 TGGGAATAAGACTCTTTTGCTTCCTGG-CCTAACAGGAAA---------CTGAAGACAC--CCCCCCCCCAC-TCAGTGAGTTGGTG-TAACAAGGGATAGCAGAAGCCTCTCTCTCTCTCTCTCTGACAGAGGAGGTAGAAGCAGGCTGTGGACTGTAC---AGGACTGGAGACTGGATACAAGAGAAG s canFam1.chr18 28781877 173 + 66173745 TTTCAACAAGAACTGCTTTGCTCTTGATCCTCAGAGAACACCACAGACTCTAAAGACCCCACCTCCCCTAACATGA---AATTGATGCTAACAAGTTACAAC--------------CCACCTCCCAGGTGAAATCAGCAGGAACCAGCCCTGAGCTACACAGGAAGAGTGGATACTAGATCCAGAGGAAG a score=24536.0 s hg17.chr17_random 1512234 278 + 2618010 ACTGATTTTCACTTCT-------AAAAAGCTTCCCCAAGCCGCAGCTTTCTCTACCCACAAGGGGAACACTCCCCACAGA--NGGAGAGCACCC----CATCCCTT-GTTCTTCTGCCCCCTATCCCCTGACTGCAGAGCCTTCGATACCACAGTCT---TGTCAANTGTTTCGAGTGCAGTGAGTTGGCAGGGGCAGCAGCAGTGAGAAGGGAGAGGAGGGGCAAG---------GAGACC----ACCTCAAGCTGCTGGTCTGTCTAGAGACCAGGAAGAAACCAGAAGG-----ACGCCTGGGCCTGACC s panTro1.chr19 78873118 276 + 82489036 ACTGATTTTCACTTCT-------AAAAAGCTTCCCCAAGCCGCAGCTTTCTCTACCCACAAGAGGAACACTCCCCACAGA---GGAGAGCACCC----CATCCCTT-GTTCTTCTGCCCCCTTTCCCCTGACTGCAGAGCCTTCGATACCACAGTCT---TGTCAA-TGTTTCGAGTGCAGTGAGTTGGCAGGGGCAGCAGCAGTGAGGAGGGAGAGGAGGGGCAAG---------GAGACC----ACCTCTAGCTGCTGGTCTGTCTAGAGACCAGGAAGAAACCAGAAGG-----ACGCCTGGGCCTGACC s mm5.chr11 118575262 282 + 121648857 GTTTATGTCCATTTTTACTTGTAAGGAGGTTTCTGGAATCCACAGC--TCCCTTCCTTGAGGGGGGGTGGGAGGGACTGACAAGGAAACTGCCCAGCTCGTCCTTTCTTTCTTCCACCCTCTGCCTTTT--------AGCCTCTG-TGTCACAGCCTCCCTGCCAA-----------GCAGTCAAGAGAGATGGCCAATGGAAGCTGGAGGGTA------CGGCAAACTTTCTCCTCAGACCTAGAACCAGCAGCAGTCAGATGGCATACAACCAAGGAAG---CCAAGAGGCACAAGAGCCTAGGCCCCTCC a score=13516.0 s hg17.chr17_random 1512512 145 + 2618010 AGAACAGTCAAGGCCCCCACGTGTCTTACAGGTAAGGGCCAGGATCAGAGGCCTGATGACACCAAGCTCCCTGCACCCAAGAGGTGGCCTTTGCTTTGGGAGAAAACATACTTGTCCACTTAGCACTTGTAATTTCTATAGGAGT s panTro1.chr19 78873394 145 + 82489036 AGAACAGTCAAGGCCCCCACGTGTCTTACAGGTAAGGGCCAGGATCAGAGGCCTGATGACACCAAGCTCCCTGCACCCATGAGGTGGCCTTTGCTTTGGGAGAAAACATACTTGTCCACTTAGCACTTGTAATTTCTGTAGGAGT a score=9395.0 s hg17.chr17_random 1512657 50 + 2618010 CCTATCACACAGTGGAGCACATCCCTAGGCCCCTAAATTAAAGATGGTGG s panTro1.chr19 78873539 50 + 82489036 CCTATCACACAGTGGAGCACATCCCTACGCCCCTAAATTAAAGATGGTGG s canFam1.chr18 28782055 46 + 66173745 CCTATCACACAGTGGAGCACATCTTTAAGCCTCTAATTTAAA-ATAA--- a score=103640.0 s hg17.chr17_random 1512707 668 + 2618010 --ATGGTCCTTTCCCAGGCCAAGAGG---------------------------GGGACTC----CCGTGGT------------ACCCGGGCAAGACGCATCCAGAATGA-------------------------------------CTCCNTTCCACCTAGACCCNTGGCCACACTTTTCAAAATGCAACTGATAGA---------CTGAGCT-------CGCCCCGAGCTA----------------CAAATAAACTAACAGA-CTTTATACTCTTTATTAT-TCCAGCCTCCCTCTAAGGNCGTGTTTTGGTGTCAGTCTATGTGTTGGAGAAACNTGTGATAGCAAACTAATTTACTAANGTGCATTGCACTTAAAAATGT--CTATTTTATACACCAAATCAGTCTGTGTCACGTGGTATTTCTTGAAGGGNAGGTGACTCG---TCTGTCTGTGGGTCCCCAACCCAGAACAGGCCCCNGCCGGGTATGCACAGCATATGTATGTGTGCAATGCTCCTTGC-ATGCCCGCCATGCAACTGTTAACCAAGAGCCGTNCCTCAACCCTCACAGGTCACACAAGGAGGCAATCACACACTAAGCATCCGCGCCACTCAGAAAGCACAGGAGGAAAAAANGAGTTGGGGAGAGGAAGAGATAGACGGACA---GGGAGACAGGGAGATAGACCC----------------AGGACGTTAT--------AGAGGACAGGGATGGCTCAGGGAGCAACCTTCNTTCAGAGAGGCAGCAGAAAGTAAGANTGTTGAGGCTG-CCTGAATGTTTCATGAGC s panTro1.chr19 78873589 659 + 82489036 --ATGGTCCTTTCCCAGGCCAAGAGG---------------------------GGGACTC----CCGTGGT------------ACCTGGGCAAGACGCATCCAGAACGA-------------------------------------CTCC-TTCCACCTAGACCC-TGGCCACACTTTTCAAAATGCAACTGATAGA------AT-GTGAGCT-------CGCCCCGAGCTA----------------CAAATAAACTAACAGA-CTTTATACTCTTTATTAT-TCCAGCCTCCCTCTAAGG-CGTGTTTTGGTGTCAGTCTATGTGTTGGAGAAAC-TGTGATAGCAAACTAATTTACTAA-GTGCATTGCACTTAAAAATGT--CTATTTTATACACCAAATCAGTCTGTGTCACGTGGTATTTCTTGAAGGG-AGGTGACTCG---TCTGTCTGTGGGTCCCCAACCCAGAACAGG-CCCAGCCGGGTATGCACAGCATATGTATGTGTGCAATGCTCCTTGC-ATGCCCGCCATGCAACTGTTAACCAAGAGCCGT-CCTCAACCCTCACGGGTCACATAAGGAGGCAATCACACACTAAGCATCCGCGCCACTCAGAAAGCACAGGAGGAAAAAA-GAGTCGGGGAGAGGAAGAGACAGACGGACA---GGGAGACAGGGAGATAGACCC----------------AGGACGTTAT--------AGAGGACAGGGATGGCTCAGGGAGCAGCCTGC-TTCAGAGAGGCAGCAGAAAGTAAGA-TGTTGAGGCTG-CCTGAATGTTTCATGAGC s mm5.chr11 118576195 665 + 121648857 --ATAGTCCTTTCCTAAGCCATGAGGCTTCCTCTTGCTGGCCATCCTGCACAAAGGACCCTTTGCCGTGGC------------TCCTGAGTTGGGGGCAGCTAGTTCAGCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCCCCATTGCAACCTCTGTGCAGGTGCAATGTGTGTG---TGCAC-TTGAGCC-------TGCCCCAGGCTGCCAGAGGCAACATTCTCACATGCAGTAACAGATCTTAATACTCTTCATTATCTCAAGTCACCTTCTGAGG-CATGTTTTGGTGTCAAGTGA-GTGTTGTGGAAGC-TGTGATAACACAGTAATTTACTAA-GAGCCTTGCTCTGAAGAGCGTGATTATCGGGTGCATCGGA------TGGGTCCCCAGGCACCCATGTCAGAG-------------------CACTGTTCCTCTAGCACGGAGCAGGCCCC-----------------------------GCTACGCACCTAGAGATCACCTCCCTTCCATCACTGGCAGCGA------CCCTGACTCTCAGAGGTAGCAT-GGCAGGAAACCCCAA---AAGCATCCACCCAGCCCAGAAAGCACAGGGTGCTCAGA--------GAAGGAGACGAAGCAGA--------------ACATAAAAATTAA---------------------------AC--------AGGAGACCCTGCTGCCTCAAATGGCAGCTGAC-TTCAGAAAGGCAGCAGAAAACAAGA-TGTTTAGGCTGCCCTGAATGTTTCATGAAC s canFam1.chr18 28782101 695 + 66173745 AATTGAGTCTTTCCTAGGCCTGGCTG---------------------------GCCATCCC---TCGTGGTGGCCTGTCTTGCTCCTGAAGAGGA-GCATTCGGATCTG------------------------------------------CTCCACCTAAAC---TGGCAACACTTTCCAAAAGGCCATTTGTATACTGTGTACTGTGAGCTTCACTCCTCCCCCCCCTTATTAAAGGAAACACTTTCAAATAAAGTAACAGA-TTGTATGCTCTTTATTATCTCAACTCACCTTCTAAGG-CATGATTTGGTGGCAGCTCAAGTGTTGGAGAAAC-TGCCATAGCAAATTAAT---CTTA-GTGCACTGCACTTTAAAATGT--ATATTTTATAAACTAAATCAGTTCTTGTCGTGAGGTATTTACGCAAGGA-----CACTCATCCTCTGTCTGCAGATCCCCCACAAAGAACAGACCCT-----------------------------ACTGTGTACTCAATTATTACCACTATCCAACTGTTCATTGAAAGCTGT-CCTCAACTCTCCTAGCTAATGCAAGCAGAAAGTCACATATGAAGTGCCCGCATCCCTCAGAAAGTACAAGAGGAAAAACAGACGTGAAGGGAGGCAGACACAGACACAGCCGTGGGGGAGATGCAAACCCCCCCCCTTAAATTCTTATTTAAGAATTTATTTCTTAAAAAGAAGCCGCAATGGTTCAGAGACAAACCTAC-TTCAGAGAGGCTGCAGAAAATAAGA-TGTTTCGGTTG-CCTGAATGTTTCATGAAC a score=6187.0 s hg17.chr17_random 1513375 42 + 2618010 CTGTGAAAATACCGCGNCTGCTTTATGAAAGAGCGTGGAGAG s mm5.chr11 118576860 41 + 121648857 CTGTGAAAATGCTG-GGCTGCTTCAGGAGAGAATAAGGGGAG s canFam1.chr18 28782796 41 + 66173745 CTGTGAAAATAACG-TGCTGCTTTATAAAAGAACTTGGGGAG a score=0.0 s hg17.chr17_random 1513417 1 + 2618010 N a score=-100.0 s hg17.chr17_random 1513417 1 + 2618010 N s mm5.chr11 118576901 1 + 121648857 G a score=196198.0 s hg17.chr17_random 1513418 981 + 2618010 ATGCTGCAGCTTATC-AAAGGGTGGAGGTACAAACNGGGATGTGTTTATNAAAGNCNCNGGTGCCTTGTGCCAGGAGCAGG---GGCCTGTGGCAGGCAGGGATTTAGGGAATGGTAGGTTCCCTACCAACCAAC-----AAACGGGTCTCTGTTGAAGGGGGAGAAAGTTTCAAGATGG--CTTCTTCCCCTTNCACTTGTTTAAAAATAAAAAATTCCTCAC----CAAATGTCAGCTGCGTGTCAGGTTCCATTTGTCTTTATAACAGAGTATCAAGCAGGNAGNCGTGGAAATAAATAAACACAGGGAGACAACCGACCAAAACTTGCAGGCTCTGGGCTGGGCTGGGCTAGAGGAGGGAAGCCCCACCCTGCAAGGGCTGAAAAATAATATTGCAGTTTCGCGTTCAGCACTGTGGCTCTGGCCCACTGACATGTTTTCCTC---------TCTTTACTGCCCCCCAN----CCCNCCNTACCACCACCACTC--------TGGCGCTTCTGGGAGGGATAGGAGCGTGACTTATGCATTCCTTCCT-TCCGAATTGCACAGG-CATCATGGGTCAGAACACCATCTGCGTATATGGGGGAGGGGGCAG--ATAAACCAAGCAGGGCCCCTGCCCTCAGCAGCAAGGCACCTCCAACTGCCACACATC--GGTATGAAGGCGCCTTAGGCCAGGGCT-GAATG-TGGCTGGGNAGAGAGGTGTCAAAGAAGGCTGCAGG----GGAGAGGCAACAGGGCTGA-------ACCAGCC--------------AGGGAAGATGGCATTTTCTCTGGCCACTACAGTGTCTAGTTCATCCCTAGACACCAAAGAGCCCGATAA-NTCTCTCCATTTCACCGATGCGCCATCAGCCACGCTCCAAGTTGAGTAANGTGACAGGCGCAGGACAGAAGGCCCACTCTGGAATGGTACCCAGGAGGCC----------NTCCTTGCTGTAATTACCTCTTCGCAGGCCCTGGGCTTTTCTGGCTCTTGAATGAGCCTCGGNGAGCCCTCCC-CATGTCCTCAGCA s panTro1.chr19 78874354 958 + 82489036 ATGCTGCAGCTTATC-AAAGGGTGGAGGTACAAAC-GGGATGTGTTTATAAA----GCCGGTGCCTTGTGCCAGGAGCAGG---GGCCTGTGGCAGGCAGGGATTTAGGGAATGGTAGGTTC------------CTGAGGAAACGGGTCTCTGTTGAAGGGGGAGAAAGTTTCAAGATGG--CTTTTTCCCCTT-CACTTGTTTAAAAATAAAAAATTCCTCAC----CAAATGTCAGCTGCGTGTCAGGTTCCATTTGTCTTTATAACAGAGTATCAAGCAGG-AGT-GTGGAAATAAATAAACACAGGGAGACAACCGACCAAAACTTGCAGGCTCTGGGCTGGGCTGGGCTAGAGGAGGGAAGCCCCACCCTGCAAGGGCTGAAGAATAATATTGCAGTTTCGCATTCAGCACTGTGGCTCTGGCCCACTGACATGTTTTCCTC---------TCTTTACTGCCCCCCAC----CCCCC---ACCACCACCACTC--------TGGCGCTTCTGGGAGGGATAGGAGCGTGACTTATGCATTCCTTCCT-TCCGAATTGCACAGG-CATCATGGGTCAGACCATCATCTGCGTATATGGGGGAGGGGGCAG--ATAAACCAAGCAGGGCCCCTGTCCTCAGCAGCAAGGCACCTCCAACTGCCACACATC--GGTATGAAGGCGCCTTAGGCCAGGGCT-GAATG-TGGCTGGG-AGAGAGCTGTCAAAGAAGGCTGCAGG----GGAGAGGCAACAGGGCTGA-------ACCAGCC--------------AGGGAAGATGGCATTTTCTCTGGCCACTACAGTGCTTAGTTCATCCCTAGACACCAAAGAGCCCGATAA--TCTCTCCATTTCACCGATGCGCCATCAGCCACGCTCCAAGTTGAGTAA-GTGACAGGCGCAGGACAGAAGGCCCACTCTGGAATGGTACCCAGGAGGCC-----------TCCTTGCTGTAATTACCTCTTCGCAGGCCCTGGGCTTTTCTGGCTCTTGAATGAGCCTCGG-GAGCCCTCCC-CATGTCCTCAGCA s mm5.chr11 118576902 883 + 121648857 --CAGGCAGCTAATCAAAAAGATGTTGATACAAAT-GGGAGGTGTCTGCGAA----GCCGGGGCCC----ACGCAGGCAGG-AAGGCCTGCTGCAGGCGAGGATGCGGGGAGAGGCGGGCTCCC----------CAGCAGAAACAG--CTCCACGGAAGGGG--GAAACTTTCTAGATGG--TTTCTCCCCCT--CACTTGTTCAAAAATAAAAAATTCCTCACCGCACGCACGTCAGCTGCGTGCCAGGCTCCATTTGTCTTTATAACAGAGTATCAGGCAGG-AGTGAAGGAGATAAATAAACAGAGAGAGACAACCGACCGAACCTCACGAGCTCCGGACT-GACTGG----GGGGAGGTGAGCCTCGTGCCGCAGTCACTAAGAAATAACATTTCAATCT--------------------TGACCCATGGACAGATTCACCTC---------TCCTCACTGCCCCAGAT--GATCCCC---GCCACCCCCCCCCCCTCGAATTGGCACTTCTGGATATGACAGATGTTCTAGTGGTCCAAGCCTTCCTGTTTAACCCCCACAGTCCATCCAGGTCCAAAAGATGTTCTGCAC-TGTGGGGGA-GGGGTGG--GCAAAACAACCA-GACTCTTGCCCTGAGGAGCAGGGCCCCTCTAGCTTCTACACAGC-------AAGGGAGC---AGGCAGGTACCAGGATGCCAGCTAGA-AGGGCGC--ACAATGGAGAC--CAGACCCTGTTGAGCCAGCTCAGCTAAG------ACCAGGC--------------ACTACGAATTGCATCTTCTCT-GCCA-------GCCTAGTCCATCTCCACACACCAAATAGCCCTTCCA--TCTCTCT----------TGC-----------------------------GTGGCTGCCACAAGACC----ACACACTGGGGAATGATGCCCAAGAGACC-----------TCCTTACTGTAATTACCTCTGCTCTGG-CCTGGACCTCCCTGACCCT---GTTGGCATGGG-GACTCCTCCTGTACCTTCCAAGCA s canFam1.chr18 28782837 945 + 66173745 ACATTGCAGCTCATCGAAAAGATGTAGGTGCAAAT-GGGATGTGTTCATCAA----GCTGGTCTGT----TCTGCGGCAGGAAAGGCCTGTGGCGGGTGGGGATTTGGGGAAAGGCAGGTAC------------CCGATGAGGAGCATCTCTGTTCAAGGGGG-GAAAGTTTCAAGATGGTTTTTTTTCCCCTT-CACTTGTTTAAAAATAAAAAATTTCTCAC----CAAATGTCAGCTGTGTGTCAGGTTCCATTTGTCTTTATAACAGAGTATCAAGAAGG-AGT-GTGG----AAATAAGCACAGAGAGACAACTGACCACAGACTGCAGGTGCATGAAC-AGCCGGGCTGGAGGAAGGG---------CTGTAATCCCTGGGAAATAACATTCTAGGGTGGAGTT--------------TGGCTC----CCACGTCTCCCTCCTGCGTGGTTCCTCTAGGCCCCATATACGCCCCCCCTCACC-CCACCACCC--------TGACGCGTCTGAGTGGGATAGGAG------------GAGCTCCCTT-CACTGATTCCACAAG-CATACA----CTGAATAGCAT----GCATGTGCAGGAGGAGGTGGGCATAAATCAGCCAGGATCCTTGCCCATAAGAGCAAGGTGCCTCCAACCTGTACACGTCAAAGAATGAAGGAGCCTCAGGTCATGGTT-GAAGG-GGGCTCTG-GG----------AAGAAGTCTGCTGA----GTGG----AACAGGCCTGAGCTATGTACCAGGCTGGCAGCATCCACAACTAGGGCTAGCACATATTCTGGCCGCTGCCACATTTCATGTATCCCCAGATATCAAAGAGCTCCATAATTTCTCTCCATTTCTCCCACAAGCCGTTGGCAAGGCTCAAAGTTAAAGAA-GTGGCAGGAACACCACAGAAGGCCCACTCTGGAATGGCACCCAGGAGTCCTCCTACCTGCTTCCTTCCTAAATTTGCCTCTTCACTGGCCCTGGGCTCCCCTGGCTCT-GCGTGCACCTCAG-CAGCCCTCCC-CTTCCCCCTAGCA a score=38763.0 s hg17.chr17_random 1514399 931 + 2618010 GCCTGAGGGCGGCCGCCCGCAGCGCCTCCAGCGGCCCTGGGAC-CGTGTCAGAGGAGGGAGGGCGAGGAGGGCAG-GCTGTGG--AGGCCCCGGCCCTGTCCTTGGTGCTGGCGCCCGCTGAGTGCCTGCTGAGCCACTCAGAGGCA-GGGGCCGCCCATGCCGCCACCTTCCCT-CGACATCC-----------GCCTCTGGTCCCNTGCGGAAGGGCAGTGAATACTCCCAGCCCCGCTGTGGCTCCCAACCGAGGTCACTGGGTGCGGAGCATTTGC-----CNGCAAAGGCCCATCCGAGTAAGGGGCGGAGCC--TAGGGACTTCCCTGGACTCCTGGCTCCTCCTGGCACCCAGAGGCGACCCGAGGTCCCCGG-GGTGGGCACGGGTCTCTCTAGGCCCCAGGCCCCTGAGGAAGGTGGATCAAAGCAATCACCCAGGTTCCCTTTTTTCTTTGGGGGGAGGANGGGNTGGATAGCTGCTAGAAATGGACAACTCACCCCAGAAAACCCC-GGCCGTGCAAGCGCAAACAGCC--CAGCAC-CAGTGGCAACNCCCTGCCGCACGCACGCAGCCACCTCGCCAGGCCCAGGCTGTCTC---GGCTTGGGTGCGTNCC-CTTCAACCGTGCTTCTTGCTCCTTAACCCCTTCAGTGGTCCCCACGTCACCCGCTCTGTCTCCCTCCTGGGGACAGCCTTGCCCTCCCAG------AAGCTGTCAGCCAGGAAATGAAGGGTTAAGCGTTGCTTCCAGGAGTGTGCGGT---GAGCGGTGAGCGAGGCGCCCACGCAGGAAGGCCTCCAGTCCTGGGNGGNNANGGGGNN-CGGGGGGGCCAGCCTCGGTCCTC------GGCCAAAGGGAGCTCCTCGCCCGCAGGAGGCGG-ANGAAGGAAGGCGCGCCGGGATGGTTNCTNANANGAAGGCTNCNCCNCNTCCTCNCGCCCCCGCCATGCNCGCCCCCACGCC s mm5.chr11 118577785 811 + 121648857 GGATGAAGACTAATAAGCCCCGGATCT-CAGTGTCCACAGGACACAAGACAGGCAGAGGTGGCAGAAGAGTGAAACGCTGCAGCTCGGCCCTAGCCCTGTCCTTGGTGCTGCCGCCCTCTGTGCGGCTGC-----------GTGGCA--GGTCAGCCTTTGCTCCTGAC-------CAGCGTCT-----------G--TCTGGTCCC-TGCTGAAGGGCAGTAAATTCACCCAGGCCTGCTGCGGCT-CTGCCTGAGGTC-------GTGGAGCCTTTGCAGCGAAGGTGAAGGCACAGCATTGCTAGAGGCCCGATCTATAGGGACTTTCCTAGACTCTGGGCTCTTCCT----------ATAGACCCAAGACTATCTG-GTTG-------------------TTTGGGCCTCCGAGAAGGATGGTACAGAGTAATTGTCAGGGTTCTCTTTCATTAGTGAGAGTGGGA--GGGCGGGCAGACAGTTGGAAACGTTGATCTATACCAGAAATCCTCAGGGCTTG---GGGCAAACAGCCTGTATGAC-CTG-GCCAACCCTCCCCTG---GCACTCAGCTGCCTCCCTAGGAGCA-----TCTAATGGGGTCTGATGCGCCCCGCTTCAGCTCTGCCTCAC-CTCCCTAGCCTCCT-ATGGGTTCCCCCATCTTCCCCTCT---------------ACAGCCCAGTGTTCCCAGAGCTCCAAGC--CCAGCCGGGAAAGTAGGGGTTAAGCGCTGCTTCCCCGAGTGTGCAGT---GCGCTT-------AGCTCCCACGCAGGGAGGCCTCTGGTCCCCGG-------GGAGGG-CGGAGGCGGCAG-CTCGATCCTCCCTCTGGGCCCAGGGGAGCTCCTCGCCCGCGGGGGACG------AGGGGCTGGCTCTGAGAAGG-------------------------------CGCCCCC----TGC---CCCACATGCC s canFam1.chr18 28783782 848 + 66173745 GGGTGAGGGCGAGCGCCGGCAGCGCCCCCAGCGGCCCCAGTAC-AATGTCGGAGGCGGGAGGGCG--GAGCGCGG-GCAGCG---CGCCCCTGGCCCTGTCCTTGGTGCTGCTCCGGGCTGCCCGCTCAAGGAGCC-CTAGGTGGCAGGGGGCCGCCCAGGCCGCCgccttccctccagccttccctccagcctGGCCTCTGGCCCT-TGCTGAAGGGCAGTGAGCACACCCAGCTCTGCTGCTGCTCCTGTTGGAGGGCACTGGGCGAGGGGCATTCAGAATG-AGCCAGAGGCCAGGCTGGG--GGGGGAAGGG----GAGGGGGCTTCCGAGATTCCCAGCTTCTCCCAGCATCCTAAGACAACATAAGGCCCAGGGAGGTGGACAGAGGTCTCTCTAGGCCCCAGATCCCC--GGAGGGTGGGTCAGATAAATCGTTTAAGTCCTCTT---TTCATGGGGGAAGAA--------ATCGCTGTTGGAAATGGGCAACTCATGCCAGCAAACCCC-AGCGGCTCCAACGCAAACAGCCTACAGGCCACTG-GCCAGCCGTCCCCCT--TACACACCGCTGCCTCACCAGGCCCAGACTGGCT----GGCCTGAGTACGCCCC-TGTCA-CTCTGCCTCTG-CTCCCAAAATCCCC-AGGGTTTCCCACCTCACCCACATTGTT------------ACTACC-----CTCCCTG------AAACTCCTGGCAGGGAAATGAGGGGTTAAGCGTCGCTTCCAGGAGTGTGCGGTGGCGAGCCT--------GTGCCCACGCAGAGAGGCCTCCAGTCCCCAG-------GGAGGGATGAGGGTGGCAGCCTCGA-----------GGTC--------CTCCTCGTTCACCAGTGGAGGCGGGAAGGGAGGGGGTGCACATTGGCTGGTGCTTAGGAGG----------------CGCCCTC----C--------------- a score=266858.0 s hg17.chr17_random 1515330 1307 + 2618010 CCCNACCCCGCC---GGCGCTCAGTGACCTGGGGCGCCCCNTGCAAGAGGCCCATACCCNGNGCTTTCATCAGGCAGCGCCTTCTCGACAACTTTTCTCCCTCTCTCCCCTCACAATTTTTGCTCACCTGGAGGGTCGGTTTTTAATTAGTGTAATATCCCCGNTGAACAACGCAGCCTAATTAAGACATCCGTCCCGAATCCGCGATGCACACTTAATGAGCAGGTTCTGCCGCAATGTTTATACNTT------TTTTTT-------------TNCCATTATGTTTTGCAGACCAGTAAAACCGAAGNCCGGNCTTCCGGCTGAAAGACCTCATTACGGGCGACCCCACTCCATTAGCCTCCTACCTGCTCCACGCTAAGTGCCCGGGGCGCCCGGGTGCATGCCCAAGGCGTCCCCGAGTCCAACCTGCGTTTGGAGCAGGAAATTAGCAA-CCTGCGCG------CCCGAGAAGCGACTTCACCACCAGCTGGGGCAGGAAGGGGGNACTTAAACCCAG-----GGATGGATCCCTTGGGTCTCTGTCCTTAGCCTCCACCGTGGGGTGTCTCGCGCGTC--GGGACNTAGCGGCTCCGCGGGACTCCTTTTTAAAAGTGATCATT---AAATAAATCAGGTACCTCGCCAAAGCTGGAACGGAAAGGGGAG--GGGGAGGCAGCTCTGTTGTCCAGGAGTTTCTCCCCNACCTNCGCTGGGCCCCC--------GCCCCCACCAGTGGA--------------CTCCGGGAACATC-CCA-----CCCCCACCCTACGTGATACCAGGGATCCCAGGGCCGCT-TGGGGACCCGACAGGTTCCCAATGCCCCTCCACGCGGGGCGCCGCGTCTCGGTCCCCGCACC---------------------------GACACTGC-AGGGCTGCGCGCCAGGGGAGGCTCCGCGTCCCGGGGAGGGAGGCTGCGACCCCCAGCACCAAAATGACCACTGGCCTCGCGCCACCCCGAGACGCCACAGAAGACCACCTTCCCGAGCGTGCGANGCCCAACACGCCCCGGGNCGAGCCCCACCACCGCCCGGGGCCACCAGGGCAGAAAGTTTGGGCCAGGGGCGTGCCCG-------------GCTTTCCCAGCCCGGCCGC-GCTGCTC---GAGGCCCTG---------GGGGTG-GCCGAGGCTTCAGAGAGGCAGCCTCTGCTCCCGTTCCAGCCTTCCTATCGTGCTTGGG--GACTCGGCCCGGAGCG-CCCCCAGCCCGCCCCCTGTAGGGNCCCTGCGC-----GCCGCTCGCCCCTCGCTGCTCGGCCCCCGCGCACACCGCGGTGCTGCGGGCCCCGCTCCTATTTGGGGAGCTGTGGCAG-CCCCTTCCTC-------CCCACAACTCCTTTGGGTCATCAA-----CCTCTCAG-CGACCCTCC s panTro1.chr19 78876434 1292 + 82489036 CCCCACCCCGCC---GGCGCTCAGTGACCTGGGGCGCCCC-TGCAAGAGGCCCATACCCGG--CTTTCATCAGGCAGCGCCTTCTCGACAACTTTTCTCCCTCTCTCCCTTCACAATTTTCGCTCACCTGGAGGGTCTGGTTTTAATTAGTGTAATATCCCCG-TGATCAACGCAGCCTAATTAAGACATCCGTCCCGAATCCGCGATGCACACTTAATGAGCAGGTTCTGCCGCAATGTTTATACTTT------TTTTTT---------------CCATTATGTTTTGCAGACCAGTAAAACCGAAGCC--GGCTTCCGGCTGAAAGACCTCATTACGGGCGACCCCACTCCATTAGCCTCCTACCTGCTCCACGCTAAGTGCCCCGGGCGCCCGGGTGCATGCCCAAGGCGTCCCCGAGTCCAGCCTGCATTTGGAGCAGGAAATTAGCAA-CCTGGCCG------CCCGAGAAGCGACTTCACCTCCAGCTGGGGCAGGAAGGGGG-ACTTAAACCCAG-----GGATGGATCCCTTGAGTCTCTGTCCTTAGCCTCCACCGCGGGGTGTCTCGCGCGTC--GGGAC-TAGCGGCTCCGCGGGACTCCTTTTTAAAAGTGATCATT---AAATAAATCAGGTACCTCGCCAAAGCTGGAACGGAAAGGGGAG--GGGGAGGCAGCTCTGTTGTCCAGGAGTTCCTCCCC-ACCT-CGCTGGGCCCCC--------GCCCCCACCAGTGGA--------------CTCCGGGAACATC-CCA-----CCCCCACCCTACGTGAGACCAGGGATCCCAGGGCCGCT-TGGGGACCCGACAGGTTCCCAATGCCCCTCCACGCGGGGCGCCGCGTCTCGGTCCCCGCACC---------------------------GACACTGC-AGGGCTGCGCGCCAGGGGAGGCTCCGCGTCCGGGGGAGGGAGGCTGCGACCCCCAGCACCAAAATGACCACTGGCCTCGCGCCACCCCGAGACGCCACAGAAGACCACCTTCCCGAGGGTGCGA-GCCCCAGACGCCCCGGG-CGAGCCCCACCACCGCCCGGGGCCACCAGGGCAGAAAGTTTGGGCCAGGGACGTGCCCG-------------GCTTCCCCAGCCCGGCCGC-GCTGCTC---GAGGCCCTG---------GGGGTG-GCCGAGGCTTCAGAGAGGCAGCCTCTGCTCCCGCTCCAGCCTTCCTATCGCGCTTGGG--GACTCGGCCCGGAGCG-CCCCCAGCCCGCCCCCTGTAGGG-CCCTGCGC-----GCCGCTCGCCCCTCGCTGCTCGGCCCCCGCGCACACCGCGGTGCTGCGGGCCCCGCTCCTATTTGGGGAGCTGTGGCAG-CCCCTTCCTC-------CCCACAACTCCTTTGGGTCATCAA-----CCTCTCAG-CGACCCTCC s mm5.chr11 118578596 1256 + 121648857 ---CACCCTA-----------CAGCGGCCCTGACCACCTC---------GCCAGCGCCTCT--CTTCCACCAGCAGGCGCCTTCTCTACAACTT---------TCTCCCTTCCCAGTAGTCGCTCACCTGGAGGGTCTGGTTTTAATTAGTGTAATATCCCCG-TTACCAGCGCAGCCTGATTAAGACATCCGCCCTG-ATCCGCGATGCGCACTTAATGAGCTCAGTCTGCCATAATGTTTGTACTTT------TTTTTT---------------TCATTATTTTTTGCAGACCAGTAAAACCAAAGCT--GATTTCT-GCTGAAAGACCTCATTACCCGAGACCCTACTCCATTAGCCCCGTACCTGCTCT-------GGACCCTAGACTCCCCGATGCGCTCCCGAGGCGTCCCC-AGCTTAGCCGGCGTTTGTGACAGAAAATTAACGACCCTGCGCG------CACCAGAAGGCACTTCACCTCCAGCCGGAGGAGGAAGGG---ACTT--GCCCAGAAGAAGAAAGGATCCCTC-AGTCCCTGTCCATAGCTCCCACTGT-GGGTGTCTCGCACATCGAGAGAC-TACTGGCGCCACCGGCGTCCTTTTTAAAAGTGACCATT---AAATAATTAGAGTGCGTCTGAAAAGCAGAATCCAAAAGGGGGAGCGGGGATGTGGCTCGGCCATCCTGGA--CCCTCCTC-ACCT-CGC--AGCCCACACACACTAGCCGACGTCAGTGAG--------------CTTCGTGAACAGC-CAACCAACCCCCAATCTCATGCAAGACCCAAGATCCTGGGTCTGTTCCAGCTGTCTAATAGGGTCTCAATGCCCCCCCCCCGTGCTGGTCGCGTCTTGCTCCGGGTACAGACTGGGTGCGGGACCTGGGTGGCCAGGACACTGA-AGGGCTGCATGCCAATGGA-------------TAGGGGCGAAGCTTCATCAGGGAGCTCCCAGAGGACCGCCGGCCTGAAGCCACCCCCTGAC----------ACCTTTCTCCTGAAGAAGACA----------GCCCCAGG-AGAATCCCACCACCTCCCGGGGCCA-CAAGTCAGAAAGTTTGGGCTAGGGTTGTGCAGGCCACCTTAGCAAAGCTTTCCCAGCCGGGCTG-------TC---CCAGCCCTG---------TAGCTGTGCCAAAGC----GAGCAGTAACCTCCG----------ATCCTTGCTCACGCCTCTGGGAAGACTCGGCCCCGAGCGCCCCCCAGCTCGCGGACTAGAGAG-CCCTGTGC-----GCCACCCGCGCCT----------GTTCCACGCGTGCCGCTATGCTGAGGGCTCTGGTCCTCCCGAGAGAGCCGAGGAGGACCTCAGTCCT-------CCCACAACTCCTTGAGGTCATCAGTCAGTCCCCTCGGCCGGCTCTCC s canFam1.chr18 28784630 1225 + 66173745 CCTGACCCTGCCCTGGGCCCCCACTGGA--GGAGTGGCCCCCCTACGTTACATGCACCCCA--CTTTCATCAGGGGGTGCTTTTGCTGCAACTTTTCTCTC--TCTCCCTTCACAGTTTTTGCTCACCTGGAAGGTCTGGTTTTAATTAGTGTAATATCCCCG-TTAATAATGCAGCCTAATTAAGACATCCGCCCAA-ATCCACTATGCACAATTAACAAGCAGGTTCTGTGGCGATGTTTATACTtttacttattttttatttatttatgtatgtatttatCTTTTGCAGACCGGTAAAACCAAAGCT--GTCTTCTGACTGAAAGACCTCATGAAGGGCGA--------------CCTGGAATCTGCTAGGCGCTGAGTGCCCGGGGCAACTGGGGGTGCACCCAGGGCGTTCCTGAGCAGGGAGGGTGTTT-CAGCAGGAACTTCGTGACCCTGCGCGTGCAGATCCCTGACTTCACTTCACCTCTAGCTCGGGGTGGG-------GGTTCGCCTGGG-----AGATGGATCC--TGGGTCCCTGTCCTTCACCTCCACCACCGGGTGT-TCACA-GGC--AGGAA-GAGCGGCGCCCCAGGAGTCCTTTTTTAAAGTGACCACTAAAAAATAAACCCAGTCCCTTGGAAAAGCTGGAA----------------------AGCTC--TCACGGAGGAGTTTCCCTCA---CT-CGGCAGGACCCT--------GTGCCCTGTGGCGGGAGGGAGCTCCAGACTCCCAGGAACACCGCCA-----CCCCCACCCC-CAGGAGACTGTGGATCCGGGGGCTGCGCTGG----------GGCGCACAGGGTCGGTCCTCGGCAGGCGCCGCTCCCTCGATCTCACACG---------------------------GACAGGATGAGGGTCCCGC----AGGGAGGCTCCGCGCCCGGAGGAGG----------------------AGAGGACCTCAGGCCCTGTGCCTGCCGGGGGCACCGCGGAGG--CAGCCGCCCGAAGG---GA-------------------CGAGCGCCACCGCCTCCCGGGGCCGCTGGGGCAGAAAGTTTGGGCCAGGGTTGCGCCCG--------------------CCGCGCGGCTCCAGCTTCCCCCGGGGGCCGTGTTGGCCCCTGGAGCG-GCCACAGC-GGGGAGCAGCAGACCCGGCTCGGG--------------------CTGGA--GACTCCGCTGGGAGCG-CCCCCAGC-CGCCCCCCGGAGGG-CCCCGCGCTGCTAGCCACCCCCACCGCGGCGCCTA-CCCTCGCGCACGGTGCAACGC--GCGGCCCCGGGGCTCTTCAGGGAGCCGTGGGAG-CCCCTTCCTCCCTTCCACCCACAACTCCTTTGCGTCCTCCA-----CTCCTCGCGGGAGCCTCC a score=24018.0 s hg17.chr17_random 1516637 156 + 2618010 TTTCAGAGGACCCCGGCAGGGCTCTCTCCGGGCCTGGGTGCCGCGACAGACGCACGTTGCANCCACCNGCCGGGTCGCC-AGCCTCTCTCCCACCCGCGCGGGCTCCGGCTGCCTGCTCGGACGCGCCCCGCGGGGCCGGGATCTCCGCGCGCCTCT s panTro1.chr19 78877726 155 + 82489036 TTTCAGAGGACCCCGGCAGGGCTCTCTCCGGGCCTGGGTGCCGCGACAGACGCACGTTGCA-CCACC-GCCGGGTCGCCAAGCCTCTCTCCCACCCGCGCGGGCTCCGGCTGCCTGCTCGGAAGCGCCCCGCGGGGCCGGGATCTCCGCGCGCCTCT s mm5.chr11 118579852 149 + 121648857 TCCTCCTGGACCCCAGCAGCCCTC---CCGAGCCTGAGGATGGCGAGAGTCGCACGCCGTA-GCGCA-TCAGGGTCGCC-AGCCGTGCTTCCAGCCCTGCGGGTTGGGGCCGCCT-CCCTGATGCGCCCCGC-GGGCCGGGATCTCCGTGCGCCACG a score=4183.0 s hg17.chr17_random 1516793 100 + 2618010 GCCTCCCCCCG--CCGGGGAGTTCCCCGCGCCGGGCATTGTgccgccgccgccgccgccacagccaccaccaccgccaccgccaccgccactgccaccgcca s mm5.chr11 118580001 78 + 121648857 GCTTCCCCCCAATCCTGGGAGTTCCCAGAGCCGGGCATTGTGCCGCCGCCGCCG------------------------CCGCCGCCGCCGCCGCCACGGGCA a score=9652.0 s hg17.chr17_random 1516893 325 + 2618010 cGCAGCGCGCGGGACTCTCTGGCGTC---------TCCATGGAGCCCGA---CCCCCGGGCCTTCCCATTCA----CAAAATCGCCCCTCTGG------CCCACGGCCGGACAGAGC-----GTCCAGACCCCAGCCCCGGAGGGACCCAGGGACCCCGACCCCGCGCAGGGACCC----CTGA-CCCCGAGGGCGCCACCCCA-CCCCACGCGCCCTCGGG---TCAG-CCCCGGCCGCGCTCAGCAG------------------CCCGCCTCCCACTGCGGGGTCCCATGCGCCCCTCCGC-GGCCATGTCCCCCTCCC---CCAGCTCAGCCCGATGGGAATGACCGCCGCAGAGCGAGGCGGGCGACGA-GGCCAGGCTA s mm5.chr11 118580079 348 + 121648857 CGCAGCGCGCGGGACTCCCCGGTGTC---------TCCATGGAGCCTGA----CCCCGGGCCTTCCCATTTA----CAAAATCTCCCCTCTGGTTT---CCCAGGGGAGCCCGGAGCCCGGAGCCACGACCCCAGCCCCCGCACAACTCGGGAACCCCGACCTCGCGCGCAGACCC----CTGACCCCCAAGGGCGCCACCCCATCCTCGCGCGACCTCAGG---TCTGTCCCCAGCCACGCTCCGCAGCCCCGCGTCCTCGCCGGCCCCGCCTCCCACTGCGGGGTCCCGTGCGCCCCTCCCCGGGCCGTGCCCACAGTCCCAGCCGGCCCCTCGCGATGGTCGTGAC----------CGAGGTGGAAGCCCAGGGTCTGGCTA s danRer1.chrNA 86215551 311 + 390413307 CCCTCCACCTAGGGGCCTCTGACCCCAGCAAGCTACCCAGGGGTCCACAACTCTCCCTGGACTTGCAGTAGAGGCCCCAGGGTGCCCCCTTGGCCTCCACCTAGGGG---------------CCTCTGACCCCAGC----AAGCTACCCAGGGGTCCACAACTCTC-CCTGGACTTGCAGTAGAGGCCCCAGGGTGCCCCCTTG-CCCTCC---ACCTAGGGGCCTCTGACCCCAG-CAAGCTCCCCAG---------------GGGTCCACCTCTCTCCCTGGACTTGCAGGATTTTCCCCAA-G---ATGCCCCCTGGCC---C---TCCACCTAAATGCCTCTGAC---------------------CCCA-G--CAAGCTA a score=17179.0 s hg17.chr17_random 1517218 58 + 2618010 CTCACGGGCTCAGCGCTCCCCGCGGCAGGTGACTGGGGGCCGGCGGCCATGCCCCGGC s mm5.chr11 118580427 58 + 121648857 CTCACGGGTTCAGCGTTCCCCACGGCAGGTGACGGGGCCCTGGCGGCCATGCCCCGGC s canFam1.chr18 28786483 58 + 66173745 CTCACGGGCTCAGCGCTCCCCGCGGCAGGTGACCGGTGCCCGGCGGCCATGCCCCGGC s danRer1.chrNA 86215862 58 + 390413307 CTCAGGGGTCCACCGCTCTCCCTGGTCTTTCAGTAGAGGCCCTGGGGTACCTCCTGGC a score=52720.0 s hg17.chr17_random 1517276 817 + 2618010 TGCATCCCGGCCGCCGAGCGGGCAGCGGCGTCCTGGGGCCGCACAGGCACCGGCGAGCCNGGCGGCAAGGGGCGCGCGAGGCCGGGCTCGGGCGGCAGCTGTGGCAGCTGCTTCTCCTCCNGACCACGCGAGCTGCTGGGGCCCGGCT--------------GGGGCCGCTGTCCGAGGAGG-TTCTGCTGGCTTCGGAGCA---GCCCCGCGCTCGCTCTTCCCTCGCCTCctctctctctctctctcctccctcctctctcc-gccctcc-tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctccgccctccttctctctctctctctctctctctctctcGTTCCTCTGGCTCGTTCGGCTGGAGCGAggcggcagcaggagcacgcggcggcggcgcgggcggcggtggcagcT---CGAGCGGAGCGCGCAGC---GCGCGGCATGGGAGGGGGCTCTGGCTGTCGCGCGGCCGGGGAGGGCGGCGGAGCGGGGAGAGCCATGACCGGGTGGGCTTCGGCGGTCAGCACCCTGCAGCCTTCAGCGCCAACTCCTCGGNGGNCAGGGGCACAGAAGA-GGTGGGGTACACACGGAAGATCCCAGAACCCAGTGCTGCCCTGGTCCCTTCAAGGGCAGCC--CCAAGCCC---------GCNTGCCCCTCCCCACCTCCAAGCTATCTTGGGGGCG-----------GATCAACCCAGGTGACCCTTAACAGGNACCCCTGCCCTTGTGCCTCGCTGTCCCTGGGGGCCANTTTTTCTTTGCCAGGCCCAGGGATCCCCAGCAATGGGACGTGGTC s mm5.chr11 118580485 723 + 121648857 TGCATCCCGGCCGCC----------------------------------CCGGCGAGCC-GGCGGCAAGGGGCGCGAGAGGCCGGGTTGGAGCGGCGGTGGCTGCCGCGGCGTCTCCG-GAGACCACGCGAGCTGCTGGGGCAGGCGC--------------CCGACTGCTGTCCGAGGAGGTTTCCGCCGGTTCCGGAGCAACGGCTCCGTG-----------------------------------------TCCCCGCTCC-GCTTGCC-TCGCCGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCACCCCCCC------------------------------CTCGTTCCTCTGGCTGGCTCGGCTGAAGCGAGAAGGCAGCAGGAGCACGCGGCGGCGGTGGCGGTGGTGGTGGCGGCTGCACGGGCGGAGCGCGCAGCTCGGCGAGGGA-GGGAGGGGGCTCCGGCGGTCGCGCGGCCAGGGAGGGCGGCGAGGCAGGGAGGGCCGCGAGCCAGCTGAATGTGGCCACAGGAGCCCTGGAGTC-CCAGCTCCAG--CCTTGGAGAACGGGGATGCGTAGGCTGGTGAG--ACTTGTAGGGCACCCTAGAGCTCAGAAGGAGCTGGGCTCCTCCGAGCTCACCA--CCACCACCACCGCTGTGGTCTCACCTCCCCTTCCTCCCTCCCTTCTTCTGGGCGACCTCAGTGTAAGTCATCACTAGCAACACTTAGCAGG-ACCCCTGCAC-----CCTCGT--TCCACTGGGACCGGTTTCTC-TCGCTCTGCCCAGGGGTCCCTAGAAA---GACTTGGTC s canFam1.chr18 28786541 674 + 66173745 TGCATcccggcc-ccgagcgggcagcg---------------------------gagcg-ggcggcgaggggcgcg---ggccgggct-------cggcggcggcggccgcgTGTCCT-CCGAGCGGGCGGGC-GCTGGAGCGgggccgggccgggccggggcgggcGGCTGTCCGAGGAGG---CTCCCGGCTCCGGAGCT---GCCCCGCG---GCTCGGCGCTCCG-------------------------CGCTCGCTCCTGCTCGCCGCCGCCTcctctccctctgctcccctccctcccgccctccttctccctctctc---ctccccctttcgctctctccctctcccCG---------------------------------GCTCCTCCGGCTCGCTCGGCTGGAGCGAGGAGACAGCGGGAGCACgcggcggc---------ggcggcggcggcT---CGGGCGGAGCGCGCAGCGCGGC-------GAGGGGGGGCTCgggcgg-agcg-ggccggggacggcggcggggcggggcggggcggggG------------GGC-----GCACCCTGGCGGCCGCTGCGCTGGC-CCGCGGAGCCCCGG--CGGGGGAGG-AGTGAGCGAAGCGCAGGGGTCCCCAGGGCCCGGAGCAGCCC-GGTCCCCGCAAGCGCCGCCCTCCAGCCCTGGCCCCGCCTCTCCTCCCTCCCTCCCTCCCGCCTGCCCCCGGGGCG-----ATCGTGGGCC------GGCAGCTCCTCGGAGG-ACCCCTGCCC-----TCCCAC--CTCCCGGG---------CTC------TGGCCCTGGG----CCTGCGGTGGAACTCAGGC a score=4903.0 s hg17.chr17_random 1518093 107 + 2618010 ACCAAGCATCAGG--GACGAATGCC---ACCCCACCC-CGCATGCCATGCCATGCCTTTGAGTTGCCCACATACCCCAAACC-----------CCCTCA-CTAGGCCCAG------GTGCCCTGACTTCCT s mm5.chr11 118581208 122 + 121648857 GCTGAATGGCAGG--AATGGATGTC---CCCTCCCCCACGCCTCTCCAGCTAG---TCTGCAGCGCCCGCGCCTAACTGGCCACTGGGGAAGACCCTTA-ATAGGCCTGGAGTTCCATGCCTTGCCTTCCT s rn3.chr7 11171876 118 + 143082968 ACCACTCATTGGGCCGAGCAGTGCCATTACCCCACCC-TGCCACCCATGCCAAGCCCTTGGGCTGCTCCCATTCCGCTCACC-----------CTGTCA-CCTGGCCCAGGGCCCTTTCCCCAGGCCTCCT s canFam1.chr18 28787215 97 + 66173745 -----ACAGCGGG--AGTGAATGCC---CCCCTACAC-----TCCTCTTCCA----CTTG----GTCCACAGGCCTCCCACT-----------CCCTTACCTAGGCCTGAAATTCAGTGCCTTGCCTTCCT a score=1716.0 s hg17.chr17_random 1518200 349 + 2618010 ------GGAGGACCACTGGAAAGGAAGGG----ATCGGGCCCACTCCG--------TGCTGTTAGTCCAGATTGGCC---------AACCCAACCCATTTAAACATTTCCACCTGTGCCTGGCTGGAGAGGAAGGACTGTGGGAGGTCAGCTTAGGATTTCCCTAAAATCAAAAGATCAGGTAGCTCCTGTCCCCAGTCNCCAGCCTNCCCCCAGCATCTAGAGTAAGGGNGC----CNTGGTGTGAGTTCTGGGAGGGTCTCTATCCTTGGTGCAGAGGGAGCAGGAGAGCAGAGGCTGAGGACACAGTGGAGTGGGGACCCTCTGGAAAGGCAGGA-GAGATCTAT------TGCTGGGGTCAGCCCACCACTGGCACACAACAC s mm5.chr11 118581330 300 + 121648857 -------GAGAATCACAGAGCAGGCGGGGAGGCAGGAGGCCTACCCTGGAACAGGACACAGGGAGGACACACTTGTCCCCGCTGATAATCCTATGGCCTTAAATATTTCCATCCAGGTCAGTTAGGAGAA-------------------------------CCTAAAACCAGAAG-------AGTT--------------CCAGCCTCCCCCTAAC--CCAGGGAAAGGGAGTCTAGCGTGGTCTGAGGTCCGGCA---TCTCTAGTCTTGG-------------GAAAAGAAAGGGGTTGGGAGGCAG-GCATTG-----CCTCTGAGCTGTCAAGATGAGACCCAGGTACAACAGTGGGGCTAG----TTACTGGCATTCAGCCC s canFam1.chr18 28787312 311 + 66173745 CCAGATGGAGAGT---------GAAGGGGCCACACAGGGCCACTGCTG--------GGGTGGTTCTCCAGATTGGCG---------AAGGTAACCTATGTAAACATCCCTGCCCTGGCCTAGATGTGGGGCTGTCACTGTGGGAGGTC-GCCTAGGATTTGCCTCAAATCAGGAGAGCAGGTTGTCCCTGTTCTTACT--CCATCCT-CCCCCAAC--CTGGGGGAAGAG-GC----CCTGGTTTAGGGGCTGGGG--------------------AGGGGAGAAGGAAAGCCAAAGGTAAGGGTGGGT-GGAGTGGGGACCCTGTGGGCTGGTGGGATGAGACC---------CACAGAGGGCAG---------GAATGTCAGCAC a score=161439.0 s hg17.chr17_random 1518549 828 + 2618010 CAGAAGTGGGCAAGAAGGTCTGGACGGTCCCAAACAGGTTTAGGCAGG---AGGCTGA--GTAATCAT-TT----------CCAAAACAAAAGACATTC-TGGTGCAGCAACCAG------GCTGGAGAAACGAG----CCTGCACCATCGAAGGACATTTCCAAATTA----------------------CACACAAACA---------------GATCCAAACCCNGTCCCCATGTCACTTTTGCTCCTGAAGGCTGCTCCTGGAACAATTAGCCTCCTCCNTCGCACCTGACTGTCCTGCTTTTCTGTGTGAGGTGAAAAGCACATCATGGAATCTGGGGT----TTGGTAGGG-GCCTGGAAGACCCAGAGGCCAGGAAGAGNGGGAGTATGGATTTGGAGCNTTCTCGGTAGTAGGGGCT--CTGGGCTGCTGGCTGCCCCCCCTGCAGGGC-AGCAGAGACGGTGGCCAAGAC------------AGTGGCCGCTGCCCACTTATGAGCGTCATGCTTTTAATTTCTGGCCCTCCAGCCCGTCNTGGGTCATTGANTCTGTCTTGGCCGGTGGGNAATNCGTGTTATACAATTCCAAGCATACAGCTAAACAGCCCCACAGCTAACCACCAGATAAATGCCGTGTCNTACGAGCAAGGCAGCCGCCTGGTTGACTGAACTTTCCCCTGCCACCGGATTTGAAATGGCGCATTCCAGCTCTAAAGCNCCTAATTGGGCCTCTTGGTTCTCTGCTGTCAGATGGTCCAGGCTTTCGTGGCCTCCAACTCCCGGCTGGGCCCAGCCACTGCCTGGCAGGNCACCTGTCTCCCTGCAGGCAGGGCTCTTGCCTCGCTGTGCCGGCAGCG-CCCCCTGTCGGTNCCCGCTTNGTCCCNTTGCCCACATTTCT s panTro1.chr19 78879697 826 + 82489036 CAGAAGTGGGCAAGAAGGTCTGGACGGTCCCAAACAGGTTTAGGCAGG---AGGCTGA--GTAATCAT-TT----------CCAAAACAAAAGACATTC-TGGTGCAGCAATCAG------GCTGGAGAAACGAG----CCTGCACCATCGAAGGACATTTCCAAATTA----------------------CACACAAACA---------------GATCCAAACCC-GTCCCCGTGTCACTTTTGTTCCTGAAGGCTGCTCCTGGAACAATTAGCCTCCTCC-TCGCACCTGACTGTCCTGCTTTTCTGTGTGAGGTGAAAAGCACATCATGGAATCTGGGGT----TTGGTAGGG-GCCTGGAAGACCCAGAGGCCAGGAAGGGAGG-AGTATGGATTTGGAGC-TTCTCGGTAGTAGGGGCT--CTGGGCTGCTGGCTGCCCCCCCTGCAGGGC-AGCAaagacggtggccaagacggtggccaagGCAGTGGCCGCTGCCCACTTATGAGTGTCATGCTTTTAATTTCTGGCCCTCCAGCCTGTC-TGGGTCATTGA-TCTGTCTTGGCCGGTGGGAA--TCGTGTTATACAATTCCAAGCATACAGCTAAACAGCCCCACAGCTAACCACCAGATAAATGCCGTGTC-TACGAGCAAGGCAGCTGCCTGGTTGACTGAACTTTCCCCTGCCACCGGATTTGAAATGGCGCATTCCAGCTCTAAAGC-CCTAATTGGGCCTCTGGGTTCTCTGCTGTCAGATGGTCCAGGCTTTCGTGGCCTCCAACTCCCGGCTGGGCCCAGCCACTGCCTGGCAGG-CACCTGTCTCCCTGCAGGCAGGGCTCTTGCCTCGCTGTGCCGGCAGCG-CCCCCTGTCGGT-CCCGCTT-GTCCC-TTGCCCACATTTCT s mm5.chr11 118581630 779 + 121648857 CAGAAGTGAGCAAAGAGG-CTAGATGATACCCAAAGGCTTTAAACTGG---ATCCAGA---TACTGTT-CTATATGAAAGACGAAAATAAAAGACAATCACCATGCAGTGCCTGG------ACTCTGGGA---------CCTGCACTCTCAAAGGACATTTGCAATCTAAAAAACAAAAAACAACAACAACAAAACAAACAACAACAACAAAACATGATTAAAAAAC-AAGCCTGATACAC----GTTGCTGGATGCTGTTTGTAAAACCATCAGCTTC-----TTGCACCTAACTAAGC----TTCCAGTGTGAGGC-----ACATACCACGGAGCCTGGGGCCCTGTGGGTAGGGCAGCTAGACAGAGTAGAGAAGAGGGAGAATA--AGAGAGGCCCTGAGGTGCTCTC--------TGGCTTGCTGGGCTGCACACTGCCTTCCCTACAGAGTGAGGGCAGACGGTGTCCAGGCTG-----------AGTGACTGTTGCCTTCTCAGGA-------GCTTTTAA-TTCTGCTCCTTCGGCCTGTC-TGGGCCATCGA-TCTGTCTTGCCCAGTGGGAATCACGTGCTTTAGAG---CACGTAAGCAGTCG---AGTCCTGCAGCCGA-----ATATAAATGCCTTGTC-T-CTGGCA---CAGTCGCAAGGGTCCCTGAAGCGGCCCTAGCC-CCAAATTTGAGATGGCACAGTTCTGCCCCCATGG-ACCAACTGTTTCTC-----TCTGTGTGGCCTGGTGATCCAAGCTTTCATGGCATGGGACTGCTGGCTAGGCCCATCCA-------------CACCAATCTC----TAGGCTG---TCTTGCCTCTCTGGGCCAACGGTG----------AGT-CCCTCCTGGTTCTTCTGTCCT------- s canFam1.chr18 28787623 796 + 66173745 CAAA----GGCAGGAGGACCTGGACTGTCCCAAGCAGAACCA--CAGGATCAGGCAGACCTTACTTCTGTT----------TCTAAGCAAAACAC-----AGATGCTGTGCCCAGAACACCACAGGGGAGAAGGGGTGAGCTGTAACCTCAAA-GACGTTCTCAATCTA----------------------AAAACAAACG-------------------AAAAACC-ATCCCAGGTTGCTTTTTACTTCTGGATGATGCTTCTGGAACCCTAGGATTCCTCT-CTGTACCTGACTGTCCTGCTTTTCTGCGTGAGGCAAAAAGCATGTCATGGAATCTGGGGT----TTGTTAGGG-GCCTAGAAGAATCAGAGGCAGCGGAGGGAGG-CGTGTGGGCTCTGCGT-TCCTGCATGCCTGGGGCG--CCGTGCTGCCGGCTGCCTTCCCTGCAGGGTGAGAATAGACAGTGTCCAAGACA-----------AGTGGCTACTGTCCACTTACGAGCTTAATGCTTTTAATTTCTGGCCCTCCAGCCTGTC-TGGATCATTGA-TCTGTCTTGGCCAGGGGGAA--TCGTGCTATACAATTTCAAGTAAGCTGCT----CGGCCTACAGCTAAACACCGGATAAATGCCTTGTC-TACCAGCAAGGCAGCTGCTTGGATGATTGAACTTTCCCCAGCCCCCATATTTAAAATGGCACATCCCTGCTCAGAAGA-CCTAATTGGCTTTCTCTGTCCTCCACTGTCAGATGGTCCAGGCTTCTGTGGCCTCCAACTCGTGGCTGGGCCCACCCACTACCCATCACC-CAACTGTATCCCTACAGGCAGGCCTCTTCCTTCACAG-GCAAGTAATAGCTCCTTATAGGT-CACTCTT----CT--------------- a score=18676.0 s hg17.chr17_random 1519377 222 + 2618010 TCTCCCTGNGGGAGCCTTTTCCTCTCTGGTCCAGACCCTACTGCCCTTTGGAGCCTCCTCGCAGAAACCTCTCGAAGAGTGGGATTCGAGCCCATCTCCGTCTCCCTTCAGCTCCCCATGCGAGTTCTGNCATGTGCCTGTGAANGNTGGGGACACATTGACCTGGCAGANGCTGTGTGC-CCGAGTGGAAGAGGGGTNCCCTGCAAAGCATAGGGCCCGGTA s panTro1.chr19 78880523 216 + 82489036 TCTCCCTG-GGGAGTCTTTTCCTCTCTGGTCCAGACCCTACTGCCCTTTGGAGCCTCCTCGCAGAAACCTCTCAAAGAGTGGGGTTGGAGCCCATCTCTGTCTCCCTTCAGCTCCCCACGCGAGTTCTG-CATGTGCCTGTGAAG--TGGGGACACATTTACCTGGCAGA-GCTGTGTGC-CCGAGTGGAAGAGGGGT-CCCTGCAAAGCATAGGACCCGGTA s mm5.chr11 118582409 145 + 121648857 ---------GAGAGCCCTTCCCG-TCTGGTCCAGTTCCCACTGCCCTTCTGATCCCTCTCTTAGAACCCTCCCAGAGA------------CCAAGGTCTGCTTCCC-----------------------------------------------CATACTGCACTGCACAA-GCTGTGAGCTTCAAGTGGA--AGGGCT------CAGGACTGAAACTCTAGTC a score=44961.0 s hg17.chr17_random 1519599 306 + 2618010 AANTCATT--CCNTTGGNGGACGTTCTGGAAGAGCTCTCTGAAGACAGCACCAAATCTNTGTT-CCAAGTTCC--ACCAGTCCCAGCCCAGGACTCAGGACACGGTGGGCC-----TGCTCAGACGCCCGGGTGGTAAACTGAAATTGGCCTCTGTGGTT--GGGACTGGNCCACAGGGCNCTGCGCGTGAGGA-CACCCCTTGGGAACAGGCCCCAGCCAGGCCGGCCTCATTACCAGCCCCAGAGAGTTTGCCCTTCGTGCT-CAGCTGTCGTAGAC-AGGGATCTGGCCGGAAGAGAGTAAGTGTCAGGGCCAGCAGG- s panTro1.chr19 78880739 300 + 82489036 AA-TCATT--CCTT--GGGGACGTTCTAGAAGAGCTCTCTGAAGACAGCACCAAATCT-TGTT-CCAAGTTCC--ACCAGTCCCAGCCCAGGACTCAGGACATGGTGGGCC-----TGCTCAGACGCCCAGGTGGTAAACTGAAATTGGCCTCTGTGGTT--GGGACTGG-CCACAGGGC-CTGCACGTGAGGA-CACCCCTTGGGAACAGGCCCCAGCCAGGCCGGCCTCATTACCAGCCCCAGAGAGTTTGCCCTTCACGCT-CAGCTGTCGTAGAC-AGGGATCTGGCCGGAAGAGAGTAAGTGTCAGGGCCAGCAGG- s mm5.chr11 118582554 265 + 121648857 AC-ACACCCACCTCTGGAGGCCATTCCCAAAAAG--GTCTGCAGGTGGCACCAAGCCT-TCTT-CCAGTCTCCAGACAGGTTCCAGCCAA------ACAGCACAGTCAGCC------ACTCAGAAAGCCTGGTACTAAAATGAAGCAGGCACCTGTAGCCAAGGGGCAG--CCATGTGGC-CTGTCTAGTAGGT-TATCCCTCGAGAACAG---------------------------AGCCCAGGGCATATGTCCCGTGGACT-CAGAGGTCATCA---AAGGGTCTGCCCAGAAAAG----GATGGCAGGGCCTGTGAA- s canFam1.chr18 28788419 284 + 66173745 -----------------AGATCATTCCAGAAAATCTCTCTGAAGACAGCACCAAATCC-TGTTCCCAAGCTCC--ATCAGACCCAGC---GGGCACTCAGCACCACAGACCCATGGTGCTC-----CTGTGTGGGTGGGCTGAAGTTGGCAGCTGTGGCA----GCTTGAGCCACAGGAC-CTGCACAATGGGATCCCCCCTTGGAGACAGGCCCCAGCAAGGCTGGCCTCACGGCGAGCCCTAGGGAATGTGCCCTTCCAGCTGCAGCTGCTGTCCACTAGGGATCTGGCCAGAAAAGGGCA-----CAGGACCAAACTGT a score=12212.0 s hg17.chr17_random 1519905 70 + 2618010 ------ACATACCAGCACTAACCGGGAGATTTTCCATTTGGGGACGTCATCTAAGAGAATTTTTAAAACCTCTGAT s panTro1.chr19 78881039 70 + 82489036 ------ACATACCAGCACTAACCGGGAGATTTTCCATTTGGGGACGTCATCTAAGAGAATTTTTAAAACCTCTGAT s canFam1.chr18 28788703 76 + 66173745 ACGTCCTCATACCAGGAACACCCAGGAGATTGTCCATCTTGGGATAGCATAAAAGAATATTTTATACACCTCTGAC a score=26338.0 s hg17.chr17_random 1519975 183 + 2618010 TTGGAAACTTTAAT----------------------TTTTAAAAAGTGAGCACATGGGGAGGA--CTGGGG--AGTCCTTGGTAATAATCATTAGGAGAGAAACACAGGGAGACTGGGCTTGGGGCCAACAGGACgactgaaggcacagagctaatttcgtgccctctgaaaaatcccactaaaactacaaagagaaaattttaaaaag s panTro1.chr19 78881109 183 + 82489036 TTGGAAACTTTAAT----------------------TTTTAAAAAGTGAGCACATGGGGAGGA--CTGGGG--AGTCCTTGGTAATAATCATTAGGAGAGAAACACAGGGAGACTGGGCTTGGGGCCAACAGGACgactgaaggcacagagctaatttcgtgccctctgaaaaatcccactaaaactacaaagagaaaattttaaaaag s mm5.chr11 118583074 159 + 121648857 ACAGAAACTTCGTT----------------------TTTAAGAATATGAGGATGTAGAAGCGC--CAAGAA-CAACCCCCTGCAGTAGCAACTAGGAAAGAAGCAAAGATA--------------CCACTCTAGCTATTACAAGGCCACAGCTCA-------CCCTCAGAAAGATACAGCAAA----GCACAGAAAAGACTCTAAGAGG s canFam1.chr18 28788779 197 + 66173745 TTGGAAACTTTGTTGGTTTTCGTGTTTTCTTGTTTGTTTTA----GTGAGAACAGGGAGGAGAAGCTGAGAATGGTACTTTGCACTGATAATTAGGGACAAAACGAGGAGA--TTTACCTCAGAAACATTTTAG---TCAAGGGcacacaactaattttgttccctct--aaaaccccactaaaactaccaaaag-agattttataaag a score=-31.0 s hg17.chr17_random 1520158 1 + 2618010 g s canFam1.chr18 28788976 1 + 66173745 a a score=26468.0 s hg17.chr17_random 1520158 317 + 2618010 gggctgggcatggtggnctcaagcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaancatggntgaaacgccgtctctactaaaaatagcaaaactagccaggtgtggttgtgggntgcctgtaatcccaanttacttgggaggctgaggcaggagaatcacttgaatccgggaggtggaggttgcagagagccgagatcgcgccactgtactactccagcctggacaacaagagtgagacttccatctcaaataagaataactttaaaaagng s panTro1.chr19 78881292 311 + 82489036 gggctgggcgtggtag-ctcaagcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcaggagttcgagaccagcctggccaa-catgg-tgaaacgccgtctctactaaaaatagcaaaactagccaggtgtggttgtggg-tgcctgtaatcccaa-ttacttgggaggctgaggcaggagaatcactcgaatccgggaggtggaggttgcagtgagctgagatcgcgccactgtactactccagcctggacaacaagagtgagacttccatctcaaataagaataactttaaaaag-g a score=10809.0 s hg17.chr17_random 1520475 93 + 2618010 cataaaccccnaacgacctggagaataggagaaaagagaacagtagccggctgtgggcagcggggaggcacaggagaagtggCGGCCCGCCCT s panTro1.chr19 78881603 92 + 82489036 cataaacccc-aacgacctggagaataggagaaaagagaacagtagccggctgtgggcagcggagaggcacaggagaagtggCGGCCCGCCCT s canFam1.chr18 28788977 69 + 66173745 tataaacacc-aaagagctggagaacgggaggaaagacaa----------------------GAAAAATGATAGAGCAGTGGTGTCTGGCCT- a score=1079.0 s hg17.chr17_random 1520568 157 + 2618010 CACGGAGCTGAGTCTCGGCCCAGAGGNCAGGGAAGGCTGACAATGGAATCCCCCGAAGGNCTCAGAAGGCGTGGGGCCCAAGACCCG----------------------------------------GGGAAGCCTGGAGATCCTCG----------------------------GATAGCCCCTctggaggtt-tattccctgaggacactgaagcagc--ctctgt s canFam1.chr18 28789046 223 + 66173745 GGCCATGCTGACTCCTAACCCCACAGCAGAGGGAAGCTGA----GAAACCACCTCCAAGGCTCCGACCA-GTAAGGCCAGGGACCCGTGGAGATAGGGAAGGCAGCTCAGAGCAGCAGGATCTTTTTGAGAAGCCCACAGACCCTTGCTGGCTACCTGCTCCAGACCCCCAGATGGCCAGCCACCCTGGAGGGGGTGTTCCCTGGGGAGAATGAAGCAGGGGCTCTGT a score=11439.0 s hg17.chr17_random 1520725 585 + 2618010 ggcctgggggccgcc------------------------agacactgcggacagaggggc---gtcc----tgcacggagagccccccttttccctcacggcacctgtcag-catcctgacctccaccctcctgg-caggaggccggaagaatctcctctggggaatctcanccagcacccagagggga---aacctgaagata------------------gagctttgctgcttccaagcacaggccccactccc------tgctcggagctgccaaccagctttgcag----ccccccctaaggtgagtaaaaangnccnaangganntgaccagnacnaccntgcggaaagccttcatgagaaggagccgccaaaacac---------gcaacag------------------agcggggccg---------acttcgaggaaacagatattaggcagggaggagaaaacatcagaaatagcagtatttaatatcctcccagagatcagaggagataccgcatccatgaaccanagagcagggtgctattttaaggagaacatttagagaac-aaaaanagctgggaagttaaaagcatgagagcagaaacaaaacatctcaacagacaggctggaagagaaaagtaagggaatgccccagaaggcaaagcaaaaaggcaaa s mm5.chr11 118583901 604 + 121648857 GGCTTGGGAGCTGACCTGAGTCTGGTCAAGACCAGCACGAGTCCACGCAGGGAGGAAGGCAGAGTTCCAAGTGCCTGGGAAGCCAAGAGTCCCACTAGTGCCACAGCCCAGTTATCCTG------ACCCTCTAGATCAGGAGCCTGG-----CCTGCTCTCAGGACTCTGA-CCAGC-CGTAGGGAGAA---ACCCTACACCTACCTT-------------TAGGATTCCCTGCCAGAAGTAGCAGGACAGAAGCCC------CACTTAGCACTGAAGGTCAGCTCTGCAGGC--CTCCCCCTAACGCTGGTAG------CCTAA-------ACTCAGCAGAGCTGTAAACACAGGCTCTGAAAGAGGGAGCCACTAAACAACCTTCCCTGGGGGAGGG------------------ACCGAGGGTG---------GCCTGGAGGAGACAGGCATTGGGCAGGGAGGAGAAAATATCAGAAATAGACATATTTAATATCCTCAAAGAGATCAGAGGAGATATTGCAACCA-GAACCA-GGAGCAGGATGCTATTTTA---AGAACATTTAGAGAACAAAAAAGGGCCGGGGAATTAAAAGCATGCAAGCCGAAACAAAAAAACTCAGCAGACTGGTTGGAAGATAAAAGTAAGGGAATGTTCCAGAAGGCAAAGCAAAAAGACAAA s canFam1.chr18 28789269 509 + 66173745 GGCTGGAGGGACTTC------------------------ATGCACGGGTGGCAGAGAGGTAT-GTTG----TCCCCCAAAGGCTGAGAGCCCCCATCAGCCCCCAG---AG-GACCATG-------CCCTTCAGG-CAAAGCCCAGGAGAGTCCCTCTCT------------CCTCC-TGCAGGTAAGACATAACCTGGCTATTTCCCAGAAGAGTGTGGACCAatctccctccaggaaagccccgtgggcaagcccacccagtcctcagagcctccagtcagctctgcaggccactccccaaaatgtgagtggacat--cccca-------aatttccagacatctgaggaaagcctttcaga-agagagccaccaaactac----ccagggcggtggtggctgggggggtgggggggtgggggggtggagaggaactttgaggaaacgaa-----------gacgagagggtatcatcaacagtccctttcaatgtctcaaaaggcagcagagaagatactgcatctacgcatca-agaacaggacgctctttgaaagaaaacactgagagaac--------------------------------------caaaac----------------------------------------------aggcaaa------------- a score=-146.0 s hg17.chr17_random 1521310 94 + 2618010 gaggagaaaaagaagaaagaggggatgaaaaaaaactnagatgatcaattcacgaggctcaacacaaaaggaattctaaccccgacccccatag s mm5.chr11 118584505 52 + 121648857 GAGGGGGAGAATAGAAAAGGAGG--------AGAAATGAGATGGCACACTCATGAGAGCC---------------------------------- a score=282.0 s hg17.chr17_random 1521401 3 + 2618010 tag s panTro1.chr19 78883249 3 + 82489036 TAG a score=6168.0 s hg17.chr17_random 1521404 59 + 2618010 ggcccccagagagaaggaggaggaggagaagaa---aggaaatcatcaattacttaagaatt s panTro1.chr19 78883252 62 + 82489036 GGCCCccagagagaaggaggaggaggagaagaagaaaggaaatcatcaatgacttaagaaat s mm5.chr11 118584557 47 + 121648857 GGCGCCTGCGGAAAGGGAGG-------GAAGAG---GGGGCATCGCTAATCATTTAA----- a score=29342.0 s hg17.chr17_random 1521463 168 + 2618010 tttttccagaaataagtttcca-aattgtccacaaaatcgat-ggaaatgattcatatcaaggcacattatcttgaaaagtaaatcactgaaga---aaaaaaaaaaatgtttccccaagtttccaggtgccataaaaaagagcaggaacgagaat-agctccagaatt-ctcaa------ s panTro1.chr19 78883314 168 + 82489036 attttccagaaataagtttccacaattgtccacaaaatcaat-ggaaaggattcatatcaaggcacattatcttgaaaagtaaatcactgaaga---aaaaaaaag--tgtttccccaagtttccaggtgccataaaaaagagcaggaatgagaat-agctccagaatttctcaa------ s mm5.chr11 118584604 149 + 121648857 ---CTCAAGA-------------AATTCTCCACACAATGGATAAGAATTGACCCACATCAGAGCATATTCTCAC-AAATACAAAACACTAAAGAGGGAAAGAAAAA--TAAATCTTCAG--TTTAAGGTTCTGTGAAAAA---CAAGAATGAGTGT-GGCTCCAAGAGT-CTCAA------ s canFam1.chr18 28789778 167 + 66173745 ttgccctagaaatgagtttcct-ggttctcagcacaatggatggaaactgacccacatcaaagtatactg-----acataccaaacactgaggc---caaaaaaag----ttcccacaagtttccaggtcccataaaaaagagcccaaatgagaatgggcattagccat-ctctagaacaa a score=52374.0 s hg17.chr17_random 1521631 375 + 2618010 cacaaagagggcagctaaccaatcacaaagcgtgccttcaaaa-gctgatggcaagtgatttctggcctggaatcccttacttcacaaaattaacaatncaaacgtgagattaaaac----------naaagacatttgcacatgcgagatctcgacaaaa-ttatttcccacacaccatctctc----agctaccagaggacgtgnctctaacaaanacaagggtgtaaagcatgaaagagggcaatgagggatggaagaaancagaggatctagtaagcgggcaggga---------tccacatagtgggagaggnagggagggncaggagggcagctgtgtaccgggcaagaggttgccagtccagatgagagcaggGNTGGTGGCATGTCCAGCTG s panTro1.chr19 78883482 367 + 82489036 cacaaagagggcagctaaccaatcacaaagcgtgccttcaaaa-gctgatggcaagtgatttctggcctggaatccctcacttcacaaaattaacaat-caaatgtgagattaaaac-----------aaagacatttgcacatgcgagatctcgacaaaa-ttatttcccacacaccatctctc----agctaccagaggacgtg-ctccaacaaa-acaagggtgtaaagcatgaaagagggcaatgagggatggaagaaa-cagaggatctagtaagtgggcaggga---------tccacatagtgggagagg-agggatgg-caggagggcagctgtgtaccgggcaagaggttgccagtccagatgagagcaggG-TGGTGGCATGTCCAGCTG s canFam1.chr18 28789945 364 + 66173745 --cagtgag---agccaggagataagggtg-gtgccttcaaagtgccaaaggaaaatctttcctggcctagaatccctaacttagccaaattaacaat-cagctgtgagattaaaattaaaataaaataaaaacctttgcacatgcaaggtttcaaaaacctttatttcctatgcactgcttctcaggaagccactagaggatgtg-ctccaacaaa-acaagggagtaaatcgtgaaaacatatgacaagggatgcatgaaa-tagtgcatccagtaagaggggggagaagaggggagtccacaggatgggagaga-agg------CAG-------ACCGTGT--------AGGGGAAGCCA---TCAATTAGAGCAGGG-TGGTGACACATCCAACTG a score=1380.0 s hg17.chr17_random 1522006 9 + 2618010 CCTAGGGCT s panTro1.chr19 78883849 9 + 82489036 CCTAGGGCT s mm5.chr7 124386056 9 + 133051633 CTCAGGAGA s canFam1.chr18 28790309 9 + 66173745 TCTAGTACA a score=25562.0 s hg17.chr17_random 1522015 57 + 2618010 CAGACATGTAGAGGGCTGTCACTACCAAGATGCCTCCTGC--CATTGTACCACCCTNTT s panTro1.chr19 78883858 56 + 82489036 CAGACATGTAGAGGGCTGTCATTACCAAGATGCCTCCTGC--CATTGTACCACCCT-TT s mm5.chr7 124386065 57 + 133051633 CAGACCTGTTGAGGGCTGTCATCACCAGCATGTCTTCTGT--CACTGTCCCATCTTCTT s rn3.chr1 196638213 57 + 268121971 CAGACCTGTTGAGGGCTGTCATCACCAGCATGTCTTCTGT--CACTGTCCCGTCTTCTT s canFam1.chr18 28790318 54 + 66173745 CAGACATGTTGAGGGC-GTCATCACCAAAACACCTCTGGCAGCCTAGTGACAGAT---- a score=38128.0 s hg17.chr17_random 1522072 292 + 2618010 CAGTGCCAGGTGAGCCTGGCCCCTGCTCCCCTCTGTGCCC---NGGCCGGCTCGGGCCATGTTGCAGTGNGAGTGCCTGTTTTCCTTTCCACGCACTGCCACC----TGTGTAAGCTGAAGACCCTCATTTCGCCCCATGGA-AGCATTTACTTTGATCCACTCTTAGCATCAGGAGGTGGCCACAGGGAACAAAGAAACAGAAAACACACATCAGCCCACCAACCTGCAAGAAGCCCC------AGCCAAGGAGGCCCTTGG---TTCCCCAGGACCCCTC--------ATGCCTT--------------------GCCCAAGAACTCCCTAAAAG s panTro1.chr19 78883914 290 + 82489036 CAGTGCCAGGTGAGCCTGGCCCCTGCTCCCCTCTGTGCCC----GGCCGGCTCGGGCCATGTTGCAGTG-GAGTGCCTGTTTTCCTTTCCACGCACTGCCACC----TGTGTAAGCTGAAGACCCTCATTTCGCCCCACAGA-AGCATTTACTTTGATCTACTCTTAGCAACAGGAGGTGGCCACAGGGAACAAAGAAACAGAAAACACACATCAGCCCACCAACCTGCAAGAAGCCCC------AGCCGAGGAGGCCCTTGG---TTCCCCAGGACCCCTC--------ATGCCTT--------------------GCCCACGAACTCCCTAAAGG s canFam1.chr18 28790372 294 + 66173745 TAACGCCAGACAAACCTGGCCCAGGTTGTAATCTGTACCTTCCTGGCCTGCGTGGGCCAAGTCCTGATG-GAGTGCCTCCTTTCTTCTCCATGCACTGCCACCTGTATGTATAAGCTGAAGACACTCATTTCCCCCCTCAGACAACAC--------ATGTCCTCTTAGGAACAGGAGG----------------------------------GCGGCCCAGCCACCTGCCAGACATCCCTCTGTTAACACAGGAAGCTCTTGTGGCCTCGCCAAGAGCCTCCCAGACCAGATGCCATGGTCCACTGAGGGTCAGTGGGTTCACTGACCCCCTAAAAA a score=69.0 s hg17.chr17_random 1522364 2 + 2618010 AG s canFam1.chr18 28790666 2 + 66173745 GG a score=3246.0 s hg17.chr17_random 1522366 27 + 2618010 GCTCTTGTAAAGCGTGGGGCAGCTGCG s panTro1.chr19 78885080 27 + 82489036 GCTCTTGTAAAGCGTGGGGCAGCTGCG s canFam1.chr18 28790668 22 + 66173745 GCTCTTAT-AAGCTCAG----ACTGTG a score=17075.0 s hg17.chr17_random 1522393 100 + 2618010 GTTCCAGAGTT-------TCACATTC--TCTTCTCCCAGGCTCCTCCGTCTAAGGGTAGCAGACCCAAA--TCATCACAGACAGAAAGGACATCATGGCCCCACTTTCATA s panTro1.chr19 78885107 100 + 82489036 GTTCCAGAGTT-------TCACATTC--TTTTCTCCCAGGCTCCTCCGTCTAAGGGTAGCAGACCCAAA--TCATCACAGACAGAAAGGACATCATGGCCCCACTTTCATA s mm5.chr11 118585199 85 + 121648857 GCCCCAGATCT-------TTCCTTCCTGTCTTCTACCAGGCTTCTCCATCAATGAGTAGCAGCTC-------------------AAAGGGGTGCGTGGCTCCATTTTTACA s canFam1.chr18 28790690 103 + 66173745 GCCCCAAAACTATTTAACTTGTCTTC--CCTTCTCCTAGAC-CCTCCATCCGAGATGAGCAGCCTGAAAAGCCACAGCA-----GAAAGGCACCGTGGCTAGGTCTTTATG a score=10834.0 s hg17.chr17_random 1522493 108 + 2618010 TTCAGCACTGGACACATCCACAGATAGAAAGGAGGTGAAGATGCAACTGTAGAAGGATCGAGGAAAGCAAGAGATCAGGGGCCTGCTTTTTCCTTGCTGGTCTTTGAC s panTro1.chr19 78885207 108 + 82489036 TTCAGCACTGGACACATCCACAGATAGAAAGGAGGTGAAGATGCAACTGTAGAAGGATCGAGGAAAGCAAGAGATCAGGGGCCTGCTTTTTCCTTGCTGGTCTTTGAC s canFam1.chr18 28790793 89 + 66173745 GTGAGCATCTTGCAC------------TAAGGAGGTGCTCACACAACAGCGAAATGTGGGAGAAAAGACAGA----AGAGG---ACTTTCTGCGTGCCCTTTCTCCAT a score=30479.0 s hg17.chr17_random 1522601 155 + 2618010 GTTCTTGTGAGGTCCACAGATGGCCAGCACCGACGGCCCGTTGGAGAGCTGATGTCAC--------CGCCATTGGCTGCCTTGCTTGCTCTCTCAGTCCAACAGAGTAAATTANTAAGGTTACTCTATGTAGTCGTAACCTCCTTGTTAAGAATGGATCTCTC s panTro1.chr19 78885315 154 + 82489036 GTTCTTGTGAGGTCCACAGATGGCCAGCACCGACGGCCCGTTGGAGAGCTGATGTCAC--------CGCCATTGGCTGCCTTGCTTGCTCTCTCAGTCCAACAGAGAAAATTA-TAAGGTTACTCTATGTAGTCGTAACCTCCTTGTTAAAAATGGATCTCTC s mm5.chr11 118585868 151 + 121648857 GCCTTTATTAGGCTCATAGGTGTTCTGCACTCCAGGCT-------GAGCTTATGCTACAGCATGG-CGCC--CAACAGCCTCGGCTGCCTTGTCA-TCCAGCAGAGAGCAGTC-CAAAGTTGCTTGACACAGTTATAAACTCAGAGAGGCGAATGGACCCCTA s canFam1.chr18 28790882 154 + 66173745 GATCCTGTTAGGTCCACAGATGACCAGCA--GGTGTACCGGTGGGAAGTGCATTTTAC---ATGGTTACC--GGGCCTCCTTGTTTGGTCTCTCAATCCAATAGAGTAAATTC-TAAGGCTACTTAATGCAGTCCTAACTTCCTTGTTAA-AATGACTCTTCC a score=300.0 s hg17.chr17_random 1522756 1 + 2618010 g s panTro1.chr19 78885469 1 + 82489036 g s mm5.chr11 118586019 1 + 121648857 G a score=27669.0 s hg17.chr17_random 1522757 307 + 2618010 gccgggcacggtggctcacacctgtattcctagcactttgggaggccgaggcaggtggaccacctgaggtcaggagctcaagaccagcctggccaacat-ggcgaaaccccctctctactaaaaatacaaaaattagccgggcgaagtggagggcacctataatcccagctactcaggaggctgaggcaggagagtcacttgaacccgggaggtggagattgcagtgagccaagatcacaccactgcactccggcttgggcgacagagcaagactccatctcaag---aaaaaaaaaaaaaagaaTGGATC s panTro1.chr19 78885470 311 + 82489036 gccgggcacggtggctcatgcctgtattcctagcactttgggaggccgaggcaggtggaccacctgaggtcaggagctcaagaccagcctggccaacatgggcgaaaccccctctctactaaaaatacaaaaattagccgggcgaaggggagggcacctataatcccagctactcaggaggctgaggcaggagagtcacttgaacccgggaggtggagattgcagtgagccaagatcacactactgcactccagcttgggtgacagagcaagactccatctcaagaaaaaaaaaaaaaaaaagaaTGGATC a score=3502.0 s hg17.chr17_random 1523064 26 + 2618010 TCTCTGTCTCTCTCTATacaaa--------caca s panTro1.chr19 78885781 26 + 82489036 TCTCTGTCTCTCTCTATacaaa--------caca s canFam1.chr18 28791036 34 + 66173745 TCCCTCCTCCTCCCCACACCAATATTACATCACA a score=18317.0 s hg17.chr17_random 1523090 199 + 2618010 cacacacacacacacacacacacGTGTTACTACTTCCCCACTACTGCCAGGCCTGCT-ACCGCTGTTGTATGTGTCGGATCTCCCCTTCAGGCCACC-ATCCAAGCACGCTGTGGGACCCTGTGCAG------TCCTGCATCAATAAATACCACTTA-GGGAGAGCCCCACACGACCTGAGGGAATGTATGATCAAAACGCCCCACTA s panTro1.chr19 78885807 195 + 82489036 cacacacacacacacacac------GTTACTACTTCCCCACTACTGCCAGGCCTGCT-ACCACTGTTGTATGTGTCGGATCTCCCCTTCGGGCCACCAATCCAAGCACGCTGTGGGACCCTGTGCAG------TCCTGCATCAATAAATACCACTTAGGGGAGAGCCCCACACGACCTGAGGGAACGTATGATCAAACCCCCCTACTA s mm5.chr11 118586021 154 + 121648857 CAGGCAAACCCACATGCATCTGAGTCTCCCTACTCCCAT-------CCGGGCCCTCTAACAGTTCCTTTGTCTTCAGGGTCTCCTCTTTGGGCTGTC-ATTAATG-GGGTTGGGGGTGCAGGTGC---------------------------------------------CATGACCTGAAGGAATGTAATAATAAAGCGACCCACGA s canFam1.chr18 28791070 176 + 66173745 --TGTTAACACACAGGCATGTCCATGTC-CTACCCCTGC-------CCTGTCCTGTTGGCCACTGCTGGCTACCGCGAGTTTCCCTTTCAGGCCGCG-GTCTGAGCGCACCATAGGTCACTGGACAGGTGCCTGCCAGTGTTCATGACTTCCCTGTA-AGGACAGCCCCACAGG--------------------GAAACCACCCACTG a score=0.0 s hg17.chr17_random 1523289 7 + 2618010 CTGTTTC a score=216.0 s hg17.chr17_random 1523289 7 + 2618010 CT-GTTTC s panTro1.chr19 78886002 8 + 82489036 CTGGTTTC s mm5.chr11 118586175 7 + 121648857 AT-GCTCC a score=45500.0 s hg17.chr17_random 1523296 371 + 2618010 ACGAAACACGC-GGGGCAGATGTGCAAACATTTATACTGTGTGGGCTCTCAGGGGTTGTGCACCTGTCCNGGGCTCCATGGAATGTAGGTCACAAGGAGANCCTTGGAGGTCAGAGACGCCAACCAGCTAACTTAAATGAAGACGTCACAGGG--CCGGGCTGTGCTCTGTCC-----------CATAGCTGGAAGAGAGGTGTTCGGCCCTCACACACCCAGCCTCAGCCTCAGCTGTGTCCGCCGGCT-GGCTCTCCGCTCTTCACTTCAGTCCCAAGGTTTATCATCCCTCTTTCTCCTGACCCTTTTTTCCTGGCAGATGGTGGCAC-----AGTTTCACCTTGAAGCTAGAGCCTTCAG-TGGGAGCAGCTTTCTCCCTGCACGCCT s panTro1.chr19 78886010 371 + 82489036 ACGAAACACGCGGGGGCAGATGTGCAAACATTTATACTCTGTGGGCTCTCAGGGGTTGTGCACCTGTCC-GGGCTCCATGGAATGTAGGTCACAAGGAGA-CCTTGGAGGTCAGAGACGCCAACCAGCTAACTTAAATGATGACGTCACGGGG--CCGGGCTGTGCTCTGTCC-----------CATAGCTGGAAGAGAGGTGTTCGGCCCTCACACACCCAGCCTCAGCCTCAGCTGTGTCCGCCGGCT-GGCTCTCCGCTCTTCACTTCAGTCCCAAGGTTTATCATCCCTCTTTCTCCTGACCCTTTTTTCCTGGCAGATGGTGGCAC-----AGTTTCACCTCGAAGCTAGAGCCTTCAGATGGGAGCAGCTTTCTCCCTGCACGCCT s canFam1.chr18 28791246 352 + 66173745 ACGGTGCGTGC-GGAGCAGATGTGCGGAAGCATATACTCTGTAGGGCTCCAGGGGCT-TGTGTCTCTC--AGACCCCATGAAACCCAGATCACGATGAAA--CCTGGCAGTCAGAGGCTCCAACCCACTGACTTACCCAGTGAAGCCACGGAGGCCCGCGCCA-GCCCAGCCCTCACCTCCGGTCACAGCTGGCGCAGAGACCCTCCTCCCT-----GCACTGCCTCAGCACCAGCTG-GCCAGCTGGGTGGGCTGCCCG------ACTACACACCCGAG----------CCACCATGTGACCCCCCCTTACTCCTGGCAGATGACTACACCATGGGTTTCCACTAGGAAGGGAGAGC--TCAG---------ACTTCCTCCCCATCCCCCT a score=0.0 s hg17.chr17_random 1523667 27 + 2618010 CCTTCTAGTTTCATCTTGTCTTCCTGC a score=2565.0 s hg17.chr17_random 1523667 27 + 2618010 CCTTCTAGTTTCATCTTGTCTTCCTGC s panTro1.chr19 78886381 27 + 82489036 CCTTCTAGTTTCATCTTGTCTTCCTGC a score=4112.0 s hg17.chr17_random 1523694 11 + 2618010 TCCCTTTCAAA s panTro1.chr19 78886408 11 + 82489036 TCCCTTTCAAA s mm5.chr11 118586810 11 + 121648857 TCCTCTCCAAG s canFam1.chr18 28791598 11 + 66173745 TTCCCTCCAAA a score=355.0 s hg17.chr17_random 1523705 221 + 2618010 TTCTTCTTCCGTTTTCTCCCTCCATCCAGCCCTCTCTTGCTCTATCCTCTTCTGTCTTTCCTGCTCTGGGGATGGGGGGGTCTTAGCCTACCAGCCTAAAAACCTTATCTGGTCTTCCCCATCCTTCCAGAAGCACCCCTAGATGCTCTTCTCTCCCCTCGTTCCCCTTCC---ATCCTCGCCTTCCCTCGATCACAAGCATCCCTACCTCCACGTCCACACCC s mm5.chr11 118586821 171 + 121648857 CCCTCCCCTCCCCTCCTCTCTCC------TCTCCTCTTTCTCTCTCCTCTCCTCTCCTCACCTCTCT-----------------------------------------CTCCCCTTCCCTCCCCTCCC-----CTCCCCTCCCCCCTCTCCTCTCCCCACTCTCTCTCTCCTCTCTCCTCTCCTCTCCTCTCTC-CTCCCCCCTCTCTCTCCCCCTCCCCTCCC s canFam1.chr18 28791609 180 + 66173745 -TGCCCTCCTGCTTCCTCTGTCC----AGCCATGTCGGGCCTCCCCGACTCCAATCCCTCCTGCCCT--------GGGGGCCCTGGCCCA-CAGTCTGAAAGCGGGTGGGGGTCTCACCCTTGCTGTGAGAGCCGCTTGTAGACACTGCTCTCTCCCCAAGGACCCTTATC-------------------GCTGACA-----------CTTCCCATCTGCCCCC a score=3768.0 s hg17.chr17_random 1523926 121 + 2618010 ACGGACACCCCAGGGAAATGGCTCTCTCGGGTCACCAGGGAAGGCTGAATCACAAACAGCCAGGCCTGCACTCCCTCCTTGGTTTACTTGATCCTTTACTGCAGGTGGCCCCGTGGCCAAG s canFam1.chr18 28791789 112 + 66173745 A---ACACCCCACAGAATGGCCCTCCTGGGGTCTCCAGGGATGG---AGTCAC---CAAACTAGCCTGCACTCCACCCTCGGTGCACTTGATCATTTAAGGTAGGTGGCCCTGCTATCCAC a score=2328.0 s hg17.chr17_random 1524047 109 + 2618010 TCCCTTTCTAGAAACCTCGACTTCATCCTCCACCACAGCACCGTCTCCCACTCTTCTCTCCCGAGGTTGCACGTNCAGCATCTCCACCTGTCTTTCTCTGCTTCTCCCT s mm5.chr11 118587055 93 + 121648857 TCCCCTCC------CCTCCCCTCCCCTCCCCTCCCCTCCCCTCCTCTCCTCTCCTCTCCCTCAGGGCTCTGGATTGGGCTTCTCCA----------TCTGCTTGTCCTT s canFam1.chr18 28791901 92 + 66173745 TCCCTTTCTGGAAACTTCTTCCTGATTCTGCATGACAGCCTGGTCTTCCACTCGTCCTTCCT----------------CCTTCCCATTTGCTTCCCTCACTTCCTCCC- a score=153.0 s hg17.chr17_random 1524156 41 + 2618010 AAACACCAGCGTCCCATT---------------------------TTCCCAGGTGATCCTATTTTTCT s mm5.chr11 118587148 67 + 121648857 GCACACCAGCTTCCCAATCCGAGCAGAGCAGAGTGCGGGGAAGGCTTGCCAGCTCAGC-TGCCCCCCC s rn3.chr1 196645986 41 + 268121971 AAACACCGGGGTCTCATT---------------------------TTCCCCAATACTTTTATTTTGCT s canFam1.chr18 28791993 49 + 66173745 AAATGCCAGCTTTCCCTG------AGACTCAA-------------TCTCCAGTTTACATTATTTTCCT a score=16754.0 s hg17.chr17_random 1524197 391 + 2618010 CCCCAATGAGCTCATCCCTCCAGTGGTCTCACTGTCGTGGAAGTCATCCCCGCATTTTgagctgaaagca---acttcagaggtcatgttgcacagtccgcccatatcacagatgagaacactgaggcccagnaatgtcccgtggctcgccAGCAGCTCTGGGTCCTGGCCTGGGAT-----GCTGCCTACTGCGCCAGCCCCACTGCCCCGCCGCCTCTTGTGTCACATGCAGGGAGC--AGCAAGCGCATCTGCGATGT--CACATGTGCACCTCCAGGCTTGATATTTTATTTAAGAGTGTGCGACTCCATATCAGTGCCCAGTGGCTTTCAGTTCTGACATTTATCTTCTCCAGAGGAGGATGAACCACTTGCACGCCGTCCGTNCTCTCCTCCCACGT s mm5.chr11 118587215 304 + 121648857 CCCAACTGATGTCATCCACTCCCCACAGTCCCTGGGACAGAAGTCACCA---------GGGCTGAATGCATCCACCCCAGAG-----------CAGCCCCTTTGTGTGCCA--------CAGTCAGG-------GTGTCCTGCAGCT-----ACAGACATGGACTCTG-CCTCAGAT-----GCTGTCAA-------------------------------GGGTCACTCCAAAGAAGG--GGAGGAAGT-----TGGTAT--CACAAACAAACCT----GTCTGACATCTTATTCAAGAG-------CTCCCCAGATGGACCTAGCTGCTTTTAGACCTAATACCCAACTTCTCCAAAAGAGGGTGAACCACTGGCAAACTGTCC--TGTCTCCCCTAAGAT s canFam1.chr18 28792042 383 + 66173745 --CCACC-ATCTTACTCCTTCGTTGGCTTC-CTGTCCCAGACGTCatcatggcatttccgaatggaagc----ggctcagaggtcattctgaacagtcccctcctattacagctgaggaaactgaggctca---gagtgcctgaaca-----gcagccctagaccCTGACCCCAGGTCTGAGTCTGCAAGCAGGACCACCCCC---GCCATGCCGCCTCCTACTTCACATGCAGGGGAGCAGACAGGTGCATCTGCAATGTCACACACACACACTTCCAGACTTGATATTTTATTTAAGAGTGTGCAGCTCTATATCAGTACCCGCTTGCTTTCAGTTCTGACATTTATCTTCTCGAGAGGAGGGTGAACCCCTTGCAAATCATCCA-TATCTCCTCCCACGT a score=148427.0 s hg17.chr17_random 1524588 524 + 2618010 GGATGGGAAATGTCAGAGGGAAGTCCAGGTAGTTCAGGGTCCCACGTCCACACCACAAGGATTTACTGTTTTTGTGCTGC------TTGATGACACAGCTGTGTTTGGGGAGCGGCGATAGCCTAAAAAACGCACAAGTGGAAATAGCAAAGGTTTTCTGAGGCACCGT-CAATTTCTGCAGCCG--GGGCAGTGGCCAGT-------GTCTCCGGGAACAGGCGCCGCAGTCCACTCAGGGGCCCACAGGTTCTTCCCCGTCTTC--C---ATCTCCTTGTCTTGAGTGGGACGTGAGCCGNTATCTCTGAGCTCAGNCCTGTGATTGCACAATAATA-CCACCCAGAAAACAAATTAAAAATAGGAAAAATCCATCCAAGCCGTGTGTCTGCTCAGGCAGAATAGTGTCAGATTGCTAGGCAACTCCAGGCAGTCCTGGGGGAAGGAGGGCCGTGCTCAGCTTGTTCTGCAGAAGTAGAGTCCTTGTCCCTTTTGTGTGGATGTGCTCAGCCGAATCTCAGCAAAAGTCATGAACAGAAAGGAG s panTro1.chr19 78887667 522 + 82489036 GGATGGGAAATGTCAGAGGGAAGTCCAGGTAGTTCGGGGTCCCACGTCCACACCACAAGGATTTACTCTTTTTGTGCTGC------TTGATGACACAGCTGTGTTTGGGGAGCGGCGATAGCCTAAAAGACGCACGAGTGGAAATAGCAAAGGTTTTCTGAGGCACCGT-CAATTTCTGCAGCCG--GGGCAGTGGCCAGT-------GTCTCCGGGAACAGGCGCCGCAGTCCACTCAGGGGCCCACAGGTTCTTCCCCGTCTTC--C---ATCTCCTTGTCTTGAGTGGGACGTGAGCCG-TATCTCTGAGCTCAG-CCTGTGATTGCACAATAATA-CCACCCAGAAAACAAATTAAAAATAGGAAAAATCCATCCAAGCCGTGTGTCTGCTCAGGCAGAATAGTGTCAGATTGCTAGGCAACTCCAGGCAGTCCTGGGGGAAGGAGGGCCGTGCTCAGCTTGTTCTGCAGAAGTAGAGTCCTTGTCCCTTTTGTGTGGATGTGCTCAGCCGAATCTCAGCAAAAGTCATGAACAGAAAGGAG s mm5.chr11 118587519 491 + 121648857 GGATGGAAGAAGTCAGAAGGGAA--CAGGCAGCTCGAGGCTCCGGGCCATGGCTGGTATGGTTCAATCTCTGTA--------------------------------GGGGAGCAGCTGTGGCCT--------------TGAAAGGAAGGAGGGTTTTCTAAGGTTCCAT-TCAACTTTGAAAACTACAGGATATGGCCAGCTCCAAGAGCCTCCTGGGACAGAGGACAGGATCCCCACAGGGGCTCCGCACTGCTCTGCAGTCTCTGAC---GGCCACTTGCCTCAAGCGGGACACACACCA-TATCTTCCAGCTCAG-CCCATGATTATACAATAATACCCACCCAGAAAACAAATTAAAAATAGGAAAAATCCATCGGAGCCGTGGGTCTGCTGCGGCGGGGTGGTGTCGGATTGCTAGGCAACCCCAGGCAATCCTGCAGGAAGGAGGTCTGTG-TGAGCCGCTTGCACAGAAGAAGGGCTCTTGTCCCTTTTGTGTGGATGTACTCAGCCAGATCTGAACAGAGGTCCTGAACAGGGAGGAG s canFam1.chr18 28792425 514 + 66173745 GGACGGGAAATGTCAGGGGGAGATCCAGGCAGCTCAGGGTCCCGTGTCCACATCGC-ACACTCTTCTCTCTTCGCTTTGCTTAATATTAATAACCCGGCTGCTTCTGGAGAACCGGGATGGCATGGGGAATGTGACAGGGGTGCAGGCAGAGGGTCCCC-AGGTGCCACACAACTTTCACAAACA--GGGCGACGGCCAGA----------------GACAGATGCTGAGGCCCCTTCGAGGACCTGTGGGCTCCTCCCCATCTTC--CTGGACCTACTTGTTTCGAGTGGGACCCATGCCA-TATCTTTGAGCTCAG-CCTACGACTGCACAATAATACCCACCCAGAAAACAAATTAAAAATAGGAAAAATCCATCCAAGTCGTGTGTCTGCTGAGGCAGAGTGCTGTCAGATTGCTAGGCAACCCCAGGCAATCCTGTGGGAAGAAGGTCTGTGCTAAGCTTGTTCTACAGAAGTAGCACTCTTGTCCCTTTTGTGTGGATGTGCTCAGCCGAATCTGAGCAGACGT--------GAGTGGAG a score=0.0 s hg17.chr17_random 1525112 22 + 2618010 AGGCGGGCTGCATAAGCNCGGC a score=745.0 s hg17.chr17_random 1525112 17 + 2618010 AGGCGGGCTGCATAAGC s panTro1.chr19 78888189 17 + 82489036 AGGCGGGCTGCAGAAGC s mm5.chr11 118588010 16 + 121648857 GTGCCGGCTCTGGCGG- a score=-100.0 s hg17.chr17_random 1525129 1 + 2618010 N s mm5.chr11 118588026 1 + 121648857 A a score=938.0 s hg17.chr17_random 1525130 4 + 2618010 CGGC s panTro1.chr19 78889014 4 + 82489036 CGGC s mm5.chr11 118588027 4 + 121648857 TGGC a score=118469.0 s hg17.chr17_random 1525134 557 + 2618010 GGAGTGCACATCCGTC--TGGACAAATGGATTTTCCGGAGGATG---GAGAAGAGACGGGGGTGTCCACGTGATGAGAAACATCTGGATACGCGCTGGAAAAATCAATCTGATTTCTCTGTGCTTCCCAAGATCCAGGTGTTTACAATTGTGTAGGCA----AAGCGTCTGAATGTTAATGAAGTCTTTCCT---NCTCAATATCCTGCATCTCCCTCAGCAAGAGGCAAATGAAAACTAGGNCTCAGCAGGCCTGGGAGAGACGGGGAGCAGGAGGAGGAACTAGAGA--GACCCAGG---NCAGAGGAAGCCGGGAAATGGAACTGGGAGATCACACTCGCCCA-GTCGGGGTTTCTGCTCCCAGGAAGGAGATGGAGGCAACAGGGCAAGAAAGACACGTGCATTTTTCACAGTTCAGTCGAAACCATAATCATATTAATATGTTTGTGGATGCTAAGACGTTGGCTATAAGCATCAAATACTTT-----TCAAAGGAAGAGGCAGGGGACGTGGCATCGTGAAAAATAGCACCAATTTTCCATTTGATTNGTAAGCTCTTTAGCACTCCAGGAGGG s panTro1.chr19 78889018 552 + 82489036 GGAGTGCACATCCGTC--TGGACAAATGGATTTTCCGGAGGATG---GAGAAGAGACGGGGGTGTCCACGTGATGAGAAACATCTGGATGCGCGCTGGAAAAATCAATCTGATTTCTCTGTGCTTCCCAAGATCCAGGTGTTTACAATTGTGTAGGCA----AAGCGTCTGAATGTTAATGAAGTCTTTCCT----CTCAATATCCTGCATCTCCCTCAGCAAGAGGCAAATGAAAACTAGG-CTCAGCAGGCCTGGGAGAGACGGGGAGCAGGAGGAGGAACTAGAGA--GACCCAGG----CAGAGGAAGCCGGGAAATGGAACTGGGAGATCACACTCGCCCA-GTCGGGGTTTCTGCTCCCAGGAAGGAG-TGGAGGCAACAGGGCAAGAAAGACACGTGCATTTTTCACAGTTCAGTCGAAACCATAATCATATTAATATGTTTGTGGATGCTAAGACGTTGGCTGTAAGCATCAAATACTTT-----TCAAAGGAAGAGGCAGGGGACGTGGCATCGTGAAAAATAGCACCAATTTTCCATTTGATT-GTAAGCTCTTTAGCACTCCAGGAGGG s mm5.chr11 118588031 523 + 121648857 ACAGCTCACGTCCTTCTTTGGACAATTGGATTTTCAGGAGGATGACAGAGAAGGGA--GGGGTGGCCATGTGATGACTAACATCTGGAGCTACACTGG-GAAATCAGCCTGATTTC----TGCTTCCCGAGGCCCAGGTGTTTGGAACTGTGCAGGCAAAACAAACGTCAGGATGCTAATG--GCTCTTCCTGGTTCCCAGAATCCT--------TTCAGCAGGAAGCAGATGTAGGCTAGG-TTTGGAAGGCTGGAGAGAGCCA------AGGGGGAGGAATGGAAGA--GACCCTGG----GGGGCCAGACAGGAAAATGGATCCAGAAAATAATGAGGACCCACGGCTGGATTTGTGCTCCCAAGAGCAAAATGGA--------AGCAAGAAGCCTGCACGCTTCTTTCAGAGCCCAGTC-AAGCCTTAATCTCATTAAAACATTTGTGGATGTGGAAATATTGACTAGAAGCGTCAAATGC--T-----TAAAAGGGGTGGGCA---------GCATCATG-AAAACAGCAGAAATCTTCCATTTGATT-TGAAGTTCTACCAGACACTTAGAGGG s canFam1.chr18 28792939 523 + 66173745 GGAAGGCGCATCCGCC--TGGACAGACAGATTCTCCAGAGGACA---GAGAAGACACCGTGGTGTCCACGGGATGACAGACATCTGGATACACACTGG-AAAATCAATCTGATTTCTCCGGGTTTCCCAAGAGCCAGGTGTGTAGCACTGTGAAGGCA----AAACACCTGAATTTTAACT--GATTTTGCC----CCCCATGCTCCTCACCCCCTTTGGCGCAAGGTGAGTGCAAACAAG--TTCAGGAGGCTGGAGA-----------CAGGAGGAGATATGAGAGATGGATGCGTGGCCAGAGGCCAGCTGGAGAAAGGGAAACAGTGGGGCGCAGGCAC----GCCCGGCTCTGGGCTCCCAAGGCCGCGATGGA--------AGCA---------CGTGC---TCTCTCTGTACGCTGCAAACAGTAACCACATCACAGAG--CGCGGGTGTTAGAATGTTCACTAGGCACGTGCAATACTTTATTTAAAAAAAAAAAAAGCAGGAAATGTGGCATTGTGAAAAATGACAAGGATTTTCCATTTGACT-CTAAAGTCTTCAGAGCAGGAGAAGG- a score=89350.0 s hg17.chr17_random 1525691 665 + 2618010 TAGAACCTCGACAGCGTCTTCTCTTTTAGGAGGTGCAGAGACTGCCCAGGGCCAGCACAAAAGCATGGATTCAGGtcctggggctgccacaacaaagtcccacaaaaccagaggctgaaaacac-agaaacttattctctcacagttctggaggccaggtgtttgaaatcaaggtgtcagtggggccaggctctctcaaaaggctccagggggactccctcccgtgcttccctcctcgctcctgggggccaggggcaatcccaggtactccggggcttngtggctgcgtctctctgacctccgcctctgtcttcatgcagccttctcc---tctgcccttctttgtacaagggcagcagtcgttggacttagggccaccctgatcctgtatgacttcatcttaactaactatacctgcaaanggtactgtgtccaaataaggcaggctctgaagttctaggtggacatgaacaggggatggggggcagctcaacccactacaAAGGGCTTGTGAAGGGACTCAGGCAGGCTCCGGGGCAGGTGGAC---------TCCAGCA-ATCCTCTG-----ATCTCCTCCACGTC----CCCGACGGACAGGGTGTCACCCAG--------GAAGCACTCCAGGGACAAGCCATTCACCATCTCCCC-----------TCCTCCAGCCCTGGGGGAGCCTCCTCTACTGGAA s panTro1.chr19 78889570 663 + 82489036 TAGAACCTCGACAGCGTCTTCTCTTTTAGGAGGTGCAGAGACTGCCCAGGGCCAGCACAAAAGCATGGATTCAGGtcctggggctgccacaacaaagtcccacaaaaccagaggctggaaacac-agaaacttattctctcaccgttctggaggccaggtgtttgaaatcaaggtgtcagcggggccgggctctctcaaaaggctccagggggactccctcccgtgcttccctcctcgttcctgggggccaggggcaatcccaggtactctggggctt-gtggctgcgtctctctgacatccgcctctgtcttcacgcagccttctcc---tctgcccttctttgtacaagggcagcagtcgttggacttagggccaccctgatcctgtatgacttcatcttaactaactatacctgcaaa-ggtactgtgtccaaataaggcaggctctgaagttctaggtggacatgaacaggggatggggggcagctcaacccactacaAAGGGCTTGTGAAGGGACTCAGGCAGGCTCCAGGGCAGGTGGAC---------TCCAGCA-ATCCTCTG-----ATCTCCTCCACGTC----CCGGACGGACAGGGTGTCACCCAG--------GGAGCACTCCAGGGACAAGCCATTCACCATCTCCCC-----------TCCTCCAGCCCTGGGGGAGCCTCCTCTACTGGAA s canFam1.chr18 28793462 668 + 66173745 CAAAGCAGAGGAAGCACCTTCCCTTTCGTGCCACACAGGGAACGCCCGGGGCCGGGGCAGCAG-GTGATTCCACtccctagggcttctggaa--------cccaaaatcgggggcttaagacaagagaaatatcttttctcacagtcctgaaggccagatgtcccaaatcaaggcatc-----------tccacctccgaggactctggtcagaaaccatcccaggcccctctcctggcttctgggggttgctggcaatccttgggcttccttggctt-gtggcaacatcacttt-acctctgcctctgtctccacatggcctcccccatgcattccctccttc---taagggca--aatcactgaattcagatcccacctaatccagcaggacctgatcttaaccaattacatcctcaaa-gaccctatttctaaggaagac---cactgggattccaagtggacacaaattttga--gggatactattcaacacacaTCGAAGGGATCAATAATGAAATCAGATGAGCTTCAGAGCAGCTGGCCAtcacctgatccagcgtgtcctctgtgggaacctttcctaccttacaaccctccg--cacggcaccacccagctctgcccgagcaaccacggtggcagggtgctccccacgtcccccgacagactttccctcaag----gggaagacctgcactgctggga a score=7562.0 s hg17.chr17_random 1526356 58 + 2618010 AACNATCCTTTTCAACAGCAA-CCAAATTCTCCTCTGGCCGTCGTCCAGGTTGGAGTTC s panTro1.chr19_random 1644528 57 + 57627672 AAC-ATCCTTTTCAACAGCAA-CCAAATTCTCCTCTGGCCGTCATCCAGGTTGGAGTTC s canFam1.chr18 28794130 57 + 66173745 aac-attc-ttccaacgttgatcccagacctgctgtgctcgtcatccagttgggaattc a score=24243.0 s hg17.chr17_random 1526414 187 + 2618010 AGACCTACCTTCTGGAGTAACGAAAAATAACAAAAACAGCAATCGTGGCTGCTTCCCGCACCCTGGAGCCCAAGCCAACcacacgcgcacacacgcacatgcacacacatgcacatgcacacacacacgtgcacacat--gcatatgcacacac--gcacatgcacacatatgtacatgcacacat--gcaca s panTro1.chr19_random 1644585 177 + 57627672 AGACCTACCTTCTGGAGTAACGAAAAATAACAAAAACAGCAATCGTGGCTGCTTCCCGCACCCTGGAGCCCAAGCCAACCACACGCGcacacacgcacatgcacacaca----------------cacgtgcacacatacgcatatgcacacacacgcacatgcacacatatgtacatgcacacacacgcaca s mm5.chr11 118589896 179 + 121648857 AGAAGCACCTTCTGAGGCCCTGGAGAATAAGGAAAGCAGTGTCCATGGCTCCCTACTGAACCAC--AGGCCAGGGCAGCCACAGGGGTGAGCCCGTGCCTATACACACA--------TAGATGCACACGCTCCTACAG--CTGTTCTTATGGACCAGGTCAGCCACAGATGTGTGCATGACTATAC--ACACA s canFam1.chr18 28794187 156 + 66173745 gcttctgccttctggagtgatgaggaataagGAAG--AGTGACCGTGGCTCCTTCCTGCACCATCAAGCCCAG--------CACACAGATGCCCACAGGTGTGCATAGA--------GATCCCCACAGGTacaaacaa---------cacacag------atgcccacagatgcacacacaagtgc--cca-- a score=56463.0 s hg17.chr17_random 1526601 909 + 2618010 ca---agcacatgcacacatgtgtgcatgcacgcacn-----atgcac--acatacacacatgcacacgcgcacacatgcacgcgn-cggacatgcacacacacatgcacacac--atgtgcacatgcacacacgtgcacatgcacacacagg--------gacatgcacacacgcacatgcacacat--acgcacatgcacacacacg------------------------------tgcacacatacgcatatgcgcacac----acgcacacacgcacatgcacaaatatgtacatacacgcacgcacacagacatgcacacacacggacatggacacacacggacatacacacacatgcacacatgcccacatgcacac------------------acacggacatgcacacacgcacgtgcacacatgcacatgcacacatgcgcacacacatgcacacgtgcacacacgcacgtgcacac--acgcgcacacacatgcgcatacgtgcacatgcatacgcgcacatgcacacacgca--tgcacacatgtgcacacccgcgcgtgcacacacgcacgcacacacacgcacgcacgcacacatgcacacacgcacatgcacacacgcacatgcacacacacgcacaca------cacggacatgcacacacgcacaTGCACACATGTGCCCATGCCGTCCTGTAGGTATTTCTCAGGCGACCCCCTCCACACCCTGA-TGCCCTCCTGGAACCCCACATGATTCTCTGGGGGTTCCTCAATGGTCCCAGAACCTGGCTCCACCCTCCACAGCAGGGCAAACGGCAGAGAAGGGTTATCATTCCTGCCCTTGGGACCCAGGCTGTCCACTGTGACGTCCTT---AGCTGCCACATCACACCCGATCTCATTTCAGGCTGGTTTCTTCTACGCCGTTCCTGGGG----ACATCCA-----GACATCAGTGGGGTACTTCTCTTACTCCTGTTAAAGTTAATC s panTro1.chr19_random 1644762 931 + 57627672 cacacag-acatgcacacacacggacatgcacacacacggacatacacgcacatgcgcacatgcacacgcgcacacatgcacacacacggacatgcacacacgcgtgcacacacgcacatgcacatacacacatgagcacacgcacacacatgcacacatggacatgcacacacgcacatacacacacgcacacacatgcacacacacggacatgcacacacgcgtgcacacacgcacatgcacacatacgcacatgcacacacgcacacgcacacatgcacacgcacacatatgtacatgcacacacgcacaca------------cacggacatgcacacacacggacatacacgcacatgcacacatgcgcacatgcacacgtgcacacacatgcacacacacggacatgcacacacgca--tgcacacacgcacatgcacacat----acacacatg--------------------tgcacac------gcacacacatgcacacacacggacatgcacacac--acgtgcacacacgcacatgcacacatacgcaca--------tgcacacatgcac--------acgcacacacgcatacatgcacacactgacatgcacacacgcacatgcacacacatgtgcacatacatacacggacatgcacacacgcacatgcacacaTGTGCACCTGCCGTCCTGTAGGTATTTCTCAGGTGACCCCCTCCACACCCTGA-TGCCCTCCTGGAACCCCACATGATTCTCTGGGGGTTCCTCAATGGTCCCAGAACCTGGCTCCACCCTCCACAGCAGGGCAAACGGCAGAGAAGGGTTATCATTCCTGCCCTTGGGACCCAGGCTGTCCACTGTGACGTCCTT---AGCTGCCACATCACACCCGATCTCATTTCAGGCTGGTTTCTTCTATGCCGTTCCTGGGG----ACATCCA-----GACATCAACGGGGTACTTCTCTTACTCTTGCTAAAGTTAATC s canFam1.chr18 28794343 544 + 66173745 ----aag---------------------gcacaaaca-------------------------------gcacacagatgcatacag--------gtgcacacagatgcccacag--gtgcgcaaaggca--------------tacacacagg--------tgcacgta-gcacacacatacccacacgtgcgcacaggcattcacaca------------------------------ggtgcacata-----------------------------------------------------------gcacaca----------------------------------------------------GATGCCCACAGG----------------------------------------------TGT------------------------GCAAAGGCA--------------------TACACTCGGGTGTGTACAGGCATACACACAGGTGCACATG---------------GCACACAGA--TGCCCACAGGTGCATA----------------------------------------------------------------------------------------CACA------CACAGAGGTGCACG------------------------TGCAGTCCCACAGCTACTTTGCAAACAA-CCTGTCCTCATCCTAACTGCCATCCTGGAATTCTGCACAAGTGTCTGGAGG-CCCAGAATGTGCCCAGAACCTGGCTCCAGGCT-CACAGCA-GTCCAATGGCAAAGAGCTAAGAGAACTCCCTCCATC-ACACCTGGGGTGTCCACCAAGACACTCCTAACAGTAGCTGCAATAGGCT---GCTTGTTTTAAGCCCATTTCTTCTGCACTATTTCTGTAAATCTATGTCCAAACATGGCATGGGTGAGCTCTCTTCCTTACCCCTGTTAAATGTAATC a score=26754.0 s hg17.chr17_random 1527510 306 + 2618010 CAACttc-----ttttttttttttttttgagatggagtctcattctgttgccca-ggtgggagtgcagtggcacaatctcagctcactgcaagctccacctcccaggttcaagtgactctcctgcctcagcctcccaagtagctgggactacaggcacgtgccaccacgcccggcttatttttctatttttagtagagatgtggtttcaccatgctggccaggcgggtctcgaanctcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctggaattacaggtgtgagccaccacgcccagcc s panTro1.chr19_random 1645693 311 + 57627672 CAACttctttttttttttttttttttttgagatggagtctcattctgttgcccagggcgggagtgcagtggcacaatctcagctcactgcaacctccacctcctaggttcaagtgactctcctgcctcagcctcccaagtagctgggactacaggcacgtgccaccacacccggcttatttttctatttttagtagagatgttgtttcaccatgctggccaggtgggtctcgaa-ctcctgacctcaagtgatccgcccgcctcggcctcccaaagtgctggaattacaggtgtgagccaccacgcccagcc a score=5767.0 s hg17.chr17_random 1527816 29 + 2618010 TGTCCTTCACTTTGTATTATCCCAAAGTT s panTro1.chr19_random 1646004 29 + 57627672 TGTCCTTCACTTTGTATTATCCCAAAGTT s canFam1.chr18 28794929 29 + 66173745 TGTCCCTCAGTTCGCATCACTCCAGGGTT a score=2023.0 s hg17.chr17_random 1527845 264 + 2618010 GAAACCCAGCACCGAAGGGCTTGATCCAAGCTGG-GGGAAACCGTTNGAGCAGGAATGGAGCCCTGAGCAACCCTGCAAAGCCAACGATACCCAGCGAGGGGGCCATCCTGAATCTACACATTTTCAAGGTGCAGATATTAAATAACCATAGTAAAAGCACGNTCTCTACCAACAAGCAGAAGTGAGACTTCACTGAATCATGTTGG----------TCGTTAGAGTTTGCAATACACTGAGTGCCTGGGTGGCAAATTCTGACC-------------------------------------------------TGTACAAGTG s canFam1.chr18 28794958 268 + 66173745 CAAAGCACG-ACTGAAGAGCTTGACCCAGACCAGCAAGAAACAGT--GTGCAG----------------AGCCCAGCAG--------------AGTGGGTGAGTGGTCATGGCTCTATACTTTTTAAGGGTATAGCTATTAAATCATTGTA-----------------ACTAACACAGAGA------GCTTCACAGAGTCATTCTGGATGGCTTTTATCCTTCAAGTTTAGAAGATACTGAATTCCTTAATGGAAAATTCAGACCTTCGCTATTTCCATGAATTTCTTTTTTTCCCCCTGGTTTTACTGAGCTATGTATGATTG a score=9139.0 s hg17.chr17_random 1528109 767 + 2618010 TCCATGAACTTCTCA-----------------------GTGATGACTGT--CGGGTCAATGTCAGTTTCATCGGGGCATAACCCAGTGTCCTTCAGAAACCAAGTGCGG---GAGTCGTGCATGTCACTAAANTGTTCATGCGTGCCTGCAGGACTCAGGGGCACGTGGCTGTGTGGGATGCAGCCTCTATGGGAANGCTTGCTGCTAGCACTGCTAGCACGTGTTACTAGGTGTACACAGGCTAACCCAGTCACCACCCNACAAAGGCAGCAGCTGCTGGTGGCTGCTCTCACCCGNTGTGAAGACACACACATCATACAAGATCGAGCGTGTGTTCATGACACCGCTTAAGAGACACCCGAATCCGGGGAGAAGGATAAGGGACAGGCTGCAGAGAAGACCGCAAGCTAATCTCAGACCTCTCAGACCCTGAACTGTGCGTGTCTTTGAATTCACCCTTAATGTAAATTTCATT-CTCCTTAGTTCAAGATCTTTCAAAAGTAGGGCTTTTCTAAGGTGTCCTTTCATT--CTCATTCTCCTCCTGGAGACTCTCTGTGGGTTTCTCTTCAGCCATGCACATGTTACTAGGTATACACAGGCTAACCCAGTCACCACCCACA--AAGGCAGCAGCTGCTGGCCACCACCGCCAGCCAGACTCACATCTTGGCACACCTTCAGACCGCCTGCCCGTGGAGCCTGATGGGGTGGGGGGTGGCAGGACCGAGCCCCCTCCTTCCAGTTCCAACCTGCTCTTGGAGAAGCATCTGTCACGGGGAGTGGCAGCCCCGTACCCT s canFam1.chr18 28795356 615 + 66173745 TCCAAGAACTTCTCATGGCAGCCATGGGGCAGTACCGTGGGGTGACCGTGACAGGTCAGGGTCAGTTTCGCTGGCGCATGACTCGGTGTCCCTTCTAGGCCAGCTGCAGCCCGCACCCTCCCAGTCACTAAA-TGCTCTCACGCG-----------CACGGACACGTGGATGTGTGCCCTGCGGCTCCCGTGGGTA--CTTGCTGCTGCCAC--------------------------------------------------------------------GTGGCTTCCCACACCCA-CACAACAGCACCTTCATCCTACAAGATGG-------------GACACGGCCCCAAAGCCACCCAAG---GGGGTAGAGGA---------------GGAGAAAA-----------------------------CTAAACCATTTTTGCCTTTGAATTCATTATTACT-TGGATTTCATTGCCCCCCGGTTTAAGATCTTCCAAAA----GACGATACTGTGTTGCTACTTCATTGATGCACT-TCCTCCCAGAGAC-CCCTGAGGCACGGTCTT-----GTTCCCAGGCTCCTGTGCAAACACGACCTAATCATGTCACCACCAATAAGAAGGTAGCAGCCACCGGCC----TTGCCAGTCAGACTCACAGCTTGGCGGGCCT---GTCTGCCTGACCGGG-----TGGTGGGGCTGGAGCTG-----------------CCTCACCGTGGCGGTGGACTCTGGAGAAGACATCCATC-TGGGGAGTGCCTGCCTGGCATGTT a score=5184.0 s hg17.chr17_random 1529072 481 + 2618010 gacgtccaagatggagatgtcagcaggacggcttccttcnggaggcctctctccttgctct-----cagctggccgtcccctccctgtgtcctccacagccgtcc--ccatgtg-gcctgcattctacattccctcttccactgaggacaccagtcaggttggattggggcccatcc-caccacctcatttcacctgaatcacctcttcnaagatcctctctccaaacacggtcacacgcagaggtcctgggagttaggacg-----gcaccatatagattttgaggggCCCATGATATACCTGTTTCTTCTACTAATGTCTTTATTCCAACACAGCCACAGTGGTTCCTGNTTCTGCAAACGTGGCAGAGCCTCCGCTCCTCCCCTTCCCCAGCTGCCACTCCCCATCAGCCACAGGCCCCATCTCTACCATGCCCTGTCCTCAGTGCCCTCCTGGCCTCCCCACTGCCCT-GCCTCAGCCCAGACCCTCAGCTC s canFam1.chr18 28796025 408 + 66173745 gaggtctgggatgaaggtgccagtggggctggttcttct--gaggcctctctcctgggctggtagacgaatgaccatcttccccctaaa---cccacaggcgtccctccatgtatgtctgtgtcctg-atgcccgct----------------------CTGGATTGGGGCTAACCCACATGGCCGCGTGTAACCT-AACTGCCTCTCCCGAGGCCCCACCTCTGGATACAGGTGCATCCTGAAGTGCTGGG-GTTAGGGCTTCAACTCAACGCACAGATT--------CCCTCCATGTGTTTA----------CAACCTGCTTCTCCCTACACAGC--CGGCTTTCCCAGCACCTGT-------------------CTCCTCCCCTCCCCCA--CGGCAC-CCCCACC--CCACAG---CCACCCCT--------CTGGGCTTTGGGCACCAC---CCCACCCCCTGCCCTGGCCACACTCTGGGCCCTCAGCTC a score=4724.0 s hg17.chr17_random 1529553 25 + 2618010 CCTCCCCTACACTCATGTACACCTG s panTro1.chr19_random 1696033 25 + 57627672 CCTCCCCTACACTCATGCACGCGTG s canFam1.chr18 28796433 25 + 66173745 CCTCGCCTTCATTCCTGCACACGTG a score=127426.0 s hg17.chr17_random 1529578 1410 + 2618010 ACCGGGGAGCCAGAAACGTGCCCCAGCCCTGTTACTGCCCCAGCAGAATCCTTCCCAGCTGAAGAAGAGACTGCCTCCACTCAGGATCCTtccctgacctctgcaggtgtgctcatccccatctacagatgaagaaactgaggACTTGATAGACGCAGAGCAAGGTATGGGGTCAAGGCTGAACTTCTAGAAGCAATCAAAACTACCAAAAAACTGGTTCAAGAACACCACCATGCCCACTGCTGCCCACAGCCTGGGCGCTGAGTTTGAGATACCCCACAGGANGggnaggtagaatactggccccnaaaatgtccacgtcctaacccctggaacctgtgactatcttaggttacacagcaaggaggaaggaaggttccagatgggattggggttgctcactggtgaccttgagatgggaggtgatcctggatgatccaggtggcccaacgtaaccacagggtccttaaaagtggaagaggagactgggcgcagtggctcagacctgtaatcccagcactttgggaggccaaggcggggtggattgcttgaggtcaggagtttgagaccagcctggccaacnantggtgaaacgctgtctctactaaaaaataaataaataaaaaattagccaggcatggtggcccacacctgcaatcccagctacttaggaggctgaggcaggagaatcgcttgaacccaggagatggggattgcagtcagccaagactgcaccactgcactccagcctgagcaacaagagctaaactctgtctct--------------aaaaaaaaaaaaaaaaaaagtggaggaggcaagagagtcggtgtcagagacaatgtgatgatggaggtgggtcggagagagctgtgctgctggctccgcagggtgagggcttccatcttgaagaagg-aagagggagctgggagccaaggagcgcaagcagcctccagagactagaagaggcccggaaacagaccgcacctttgacactccagaagggaatgcagcctttctgcattttagcccagagaggccagtgtcggacttctgacctccagaacggcaagataatgaacttctgtgttttaagccactaggtttgttgcagtttgttacggtagtcctagaaaactTAATCTACCACTTCTACACCAAGAAGGGTGACGCTTCAACCACCCCAGTACAGCTTCCTAGAGAGGGGAGGCCTCATCTCCTTCCCCGAGACCCGTCagctcccggatcagggtctgccatggacacacctgcctggccaagtccgggnccacatggctggccttagctgcaggggaggctggggaagggagGGAGGCTGGGGAAGGGAGGGAGGCAGCCCTCACCCTACTAAGTTCCATCATTCCAGAAAGTCCTCCATCACAGAGAGGCCTCCAGTTGCC s panTro1.chr19_random 1696058 1418 + 57627672 ACCGGGGAGCCAGAAACATGCCCCAGCCCTGTTACTGCCCCAGCAGAATCCTTCCCGGCTGAAGAAGGGACTGCCTCCACTCAGGATCCTTCCTTGACCTCTgcaggtgtgctcatccccatctacagatgaagaaactgaggACTTGATAGACGCAGAGCAAGGTATGGGGTCAAGGCTGAACTTCTAGAAGCAACCAAAACTACCAAAAAACTGGTTCAAGAACACCACCATGCCCACTGCTGCCCATAGCCTGGGCGCTAAGTTTGAGATACCCCACAGGA--gggaggtagaatactagcccc-aaaatgtccacgtcctaacccctggaacctgtgactatgttaggttacacggcaaggaggaaggaaggttccagatgggattggggttgctcattggtgaccttgagatgggaggtgatcctggatgatccaggtggcccaacgtaaccacagggtccttaaaagtggaagaggagactgggcgcagtggctcagacctgtaatcccagcactttgggaggccaaggcggggtggattactggaggtcaggagtttgagaccagcctggccaac--atggtgaaacgccgtctctactaaaaaataagttaattaaaaattagccaggcatggtggcccacacctgcaatcccagctacttaggaggctgaggcaggagaatcgcttgaacccaggagatggggattgcagtcagccgagactgcaccactgcactccagcctgagcaacaagagctaaactctgtctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtggaggaggcaggagagtcggtgtcagagacaatgtgatgatggaggtgggtcggagagagctgtgctgctggctccgcagggtgagggcttccatcttgaagaaggaaagagggagctgggggccaaggagcgcaagcagcctccagagactagaagaggcccggaaacagaccgcacctttgacactccagaagggaatgcagcctttctgcattttagcccagagaggccagtgtcggacttctgacctccagaacggcaagataatgaacgtctgtgttttaagccactaggtttgttgcagtttgttacggt-gtcctagaaaactTAATCTACCACTTCTACACCAAGAAGGGTGACGCTTCAACCACCCCAGTACAGCTTCCTAGAGAGGGGAGGCCTCATCTCCTTCCCCGAGACCCGTCagctcccggatcagggtctgccatggacacacctgcctggccaagtccggg-ccacatggctggccttagctgcaggggaggctggggaagggagGGAGGCTGGGGAAGGGAGGGAGGCAGCCCTCACCCTACTAAGTTCCATCATTCCAGAAAGTCCTCCATCACAGAGAGGCCTCCAGTTGCC a score=27712.0 s hg17.chr17_random 1531206 344 + 2618010 ATGGCCAAGGTGCTTCGGCACTTCTGGAAGTAAGGGCCCTGCCGACCCTCCACTCACAGGCAGNCCCTTGGAGCCTGCAGACGCCTCTCCCATGTNCACTGAGGTTCTCCCACCTCTGAACTCACCCTTANGAAGGCACCCCCGCCCCCCACCCCCCGCCCCATCCCTCGAGGAGAACCATCCGGAGCTCCCACTTTGGGCACACTCACTGCCAGCCAAGCTCAAGGNAAGGGGTCCCCACCACGAAGCGCCCCAAGGGCAGGACTCCTGCCCTGTGTACTCAGAGACTGGGGAAGGCAGCATGTGTGTGTGTTTAAAGNGGCGTNGattgaggtgtgactggc s panTro1.chr19 78895297 332 + 82489036 ATGGCCAAGGTGCTTCGGCACTTCTGGAAGTAAGGGCCCTGCCGACCCTCCACTCACAGGCAG-CCCTCGGTGCCTGCAGACGTCTCTCCCATGT-CACTGAGGTTCTCCCACCTCTGAACTCACCCTTA-GAAGGCAGCCCCGCCCCCC-------GCCCCATCCCTCGAGGAGAACCATCTGGAGCTCCCACTTTGGGCACACTCACTGCCAGCCAAGCTCAAGGAGGGGGGGCCCCACCACGAAGCGCCCCAAGGGCAGGACTCCTGCCCTGTGTACTCAGGGACTGGGGAAGGCAGCATGTGTGTGTGTTTAAAG-GGCGT-Gattgaggtgtgactggc a score=15815.0 s hg17.chr17_random 1531550 144 + 2618010 atatggcacacctcccatggttaaagggtacagtttatgcgctatgacatgcagatatgcccgtgaaaccatcaccaccatcaggatagggaacatatccgtcacccccaaggtttcctcctgccctgatgtgccctcctcctc s panTro1.chr19 78895629 144 + 82489036 atatggcgcacctcccatggttaaagggtacagtttatgcgctatgacatgcagatatgcccgtgaaaccatcaccaccatcaggatagggaacatatccatgacccccaaagtttcctcctgccctgatgagccctcctcctc s canFam1.chr18 28798053 125 + 66173745 ACACAGCAAAGCACACAGGATTAAA-GGTGGAGTTCGTAAGTTCTGAGGTGTGGACGTGCCCCCGGTCC----------------ACAGCGAACGCAGCTAC--CCCCAGAAAGCTCCTCCCGCACCCTGAGATCtccctccta a score=31712.0 s hg17.chr17_random 1531694 194 + 2618010 -ctcctccctctccctgtattccccacccccgggcaaccactgccttgctgtctgtccctgtaca-------tgagtttgccttttctggagtttatataagtgaaatgacacagtacatacttctttgttg-cctggctgccttccctcagcaccattccccagagatgcggccatgcccttgcctgcaccaaaggttcact s panTro1.chr19 78895773 194 + 82489036 -ctcctccctctccctgtattccccacccccaggcaaccactgccttgctgtctgtccctgtaca-------tgagtttgccttttctggagtttatataagtgaaatgacacagtacatacttctctgttg-cctggctgccttccctcagcaccgttccccagagatgcagccatgcccttgcctgcaccaaaggttcact s mm5.chr11 118590577 182 + 121648857 -CCCCCCCCACCCCCTG----CCCTGCGCCCAGCCACCCATCTGCTTCCTGCCTA-ATCTGCATAACACAGGTAAGCCTAAATTTTCTGTACTTTATATACATAAAATGACA-GGCATCTGCTACTCTTCTG------------TCACTCAACACAAT--CCCAAAAAAGGGTCTGTACAGCCGCGTGCATCAAAGACGCGCT s canFam1.chr18 28798178 170 + 66173745 ccccttcctgcacccactgccccccgcctcgagccaaccactgatctgttctatg---------------------------------gaattttacataagtaacattattcagcacagaccctcttcttggtccggctccttgcacgtagcgtcattccccagagaggcgagcacgctgccgagcgtatccgagcctcact a score=0.0 s hg17.chr17_random 1531888 1 + 2618010 n a score=0.0 s hg17.chr17_random 1531888 1 + 2618010 n a score=23946.0 s hg17.chr17_random 1531889 138 + 2618010 ccttttcattgctgagtagtattccatcgcatggatgtgctacaatttgcttagctgct------------------------------gttggtgtacat----ttatctccaggttaggggtatcgtaaatcaaggcactatcaacatttggatggacatgtgcttttat s panTro1.chr19 78896577 138 + 82489036 ccttttcattgctgagtagtattccatcgcgtggatgtgctacaatttgcttagctgct------------------------------gttggtgtacat----ttatctccaggttaggggtatcgtaaatcaaggcactatcaacacttggatggacatgtgcttttat s mm5.chr11 118590759 171 + 121648857 CCTTTTCACTAAGGGGTAATATT-CACCATGTGGATAGGTTGTCACTTGCTTACCTGTTTGTGTATATTTCAGTTATTTTATTTATGGAATCAGTATGCATTGAGTTGTTTCTGGTTTGGGGGTATTTCAGCGCAACCTACTGTGAACATTCATGTGGACAAACCTCTTTAT s canFam1.chr18 28798348 114 + 66173745 ccttgttactgctgagcggcactcccgcgcatggGCggac-------------------------------------------------gtctgag---------tgatctccagcgtggggctatcaccagtgcagctgctgtgaacgttcgtCTGGACACGTGCTTTCAT a score=2805.0 s hg17.chr17_random 1532027 22 + 2618010 ttttAAAAATAAGTGAGTTTGG s panTro1.chr19 78896715 22 + 82489036 ttttAAAAATAAGTGAGTTTGG s canFam1.chr18 28798462 17 + 66173745 -TTT----ATAAGCAAGGTGGG a score=28314.0 s hg17.chr17_random 1532049 313 + 2618010 ggccaggcgtggtggctcacacctgtaatcccagcattttgggaggctgagtgggggcggatcacctgaggtcaggaattcgagaccagcctggccaacatggtgaaatcccatctctactaaaaatacaaaaatcacctgggncatggcactaggtgcccataatcccagctactcaggaggctgaggcaggagaattgcttgaacccgggaggtggaagttgcagtgagccgaaatcgagccattgcactccagcctgagcaacaagagcaaaactccgtctcaaaaataaataaataaaTGAGTTGGGTA s panTro1.chr19 78896737 312 + 82489036 ggccaggcgtggtggctcacacctgtaatcccagcactttgggaggctgagtgggggcggatcacctgaggtcaggaattcgagaccagcctggccaacatggtgaaatcccatctctaccaaaaatacaaaaattacctggg-catggcgccaggtgcccataatcccagctactcaggaggctgaggcaggagaattgcttgaacccgggaggtggaagttgcagtgagccgagatcgagccattgcactgcagcctgggcaacaagagcaaaactccgtctcaaaaataaataaataaaTGAGTTGGGTA a score=18377.0 s hg17.chr17_random 1532362 106 + 2618010 AAGGTGGGCATGTGGCCCACTCTCACCCGCCCACACACGTGCGCAGACGGGGGTGGCTGCGGCCGCTAGGGCATGGGAGGCAGCACCCCTTACCACCAGCGGAAGC s panTro1.chr19 78897049 106 + 82489036 AAGGTGGGCATGTGGCCCACTCTTACCCGCCCACACACGTGCGCAGACTGGGGTGGCTGCAGCCGCTAGGGCATGGGAGGCAGCGCCCCTTACCACCAGCGGAAGC s canFam1.chr18 28798479 102 + 66173745 CAGGCAGGCGGGGGGCTTGCTCTTACCCA--CACAAACGTGCAAAGAC-GGGATAGCTGTGGCCTCT-GGGCATGGCAGAGAGCATCCATTACCACCAGCAGAAAA a score=83768.0 s hg17.chr17_random 1532468 595 + 2618010 CCCAACTTT-GAGAGCGAGGGGGTTTGGGGGG-----ACGAGGTGC-----TGTTTATGGNTTTTGCAGTTGCTCCAGGGGAAAGGCGGGCTAATGAACAGTTAGTGGGAAATAGTTTATTGAAGTGAACAGAACAAGAATACATTAAAATTATTAAGACTGTG------------GCCTGGGGCAGTAAGCGGCATCCNTGNTTTTCTCATAGTTTACATGA---CAGNTGGGAGAACACANGGAAGTGGGGGGAGGATGCTGGGGGCAAGGAGATGCAGGGAGGCCTCTGCCAAGGGTCAGGTGGACCAGAAACTTCCCTGGACTCATCCTCCAAAAGTTAGCATCTTCTAGCAGACCCTCCAACCTTTGCACCTCCCACNCCCNATCCCATTCCGTCCACAGCAGTGCCT--CCTAGCCACTTCTCTTTGCTTACTAACAAAAGAAAAGGGGGAAAGCCTTCCTTCCCAGCTAGGGCAGGATGCTGTCTCATCACCTGTCTCAGCGGGC---CACGCCA-GTAAGCAGGAAGCGGCCACTGTCGCTTCTGCAGGGAAGGAATGGGCTTCCCGGT-GTCTCCGGGGCT-------TAAT------------------ACTAAA-----ATCATCATCCCCCGTCTGGAACCNAGGA s panTro1.chr19 78897155 587 + 82489036 CCCAACTTT-GAGAGCGAGGGGGCTTGGGGGG-----ACGAGGTGC-----TGTTTATGG-TTTTGCAGTTGCTCCAGAGGAAAGGCGAGCTAATGAAGAGTTGGCAGGAAATAGTTTATTGAAGTGAACAGAACAAGAACACACTAAAATTATTAAGACTGTG------------GCCGGGGGCAGTAAGCGGCATCCT--GTTTTCTCATAGTTTAGATGA---CAG-TGGGAGAACACA-GGAAGTGGGGGGAGGATGCTGGGGGCAAGGAGACGCAGGGAGGCCTCTGCCAAGGGTCAGGTGGACCAGAAACTTCCCTGGACTCATCCTCCAAAAGTTAGCATCTTCTAGCAGACCCTCCAACCTTTGCACCTCCCACCCC--ATCCCATTCCATCCACAGCAGTGCCT--CCTAGCCACTTCTCTTTGCTTATTAACAAAAGAAAAGGGGGAAAGCCTTCCTTCCCAGCCAGGGCAGGATGCTGTCTCATCACCTGTCTCAGCGGGC---CATGCCA-GTAAGCAGGAAGCGGCTACTGTCGCTTCTGCAGGGAAGGAATGGGCTTCCCGGT-GTCCCCGGGGCT-------TAAT------------------ACTAAA-----ATCATCATCCCCCGTCTGG-ACCCAGGA s mm5.chr11 118591052 495 + 121648857 CACAGCCTG-GGAGGAGAGTGGG----------------GAGCTCC-----TATCTGTGG---------CTGCTCT-GGAGAAAGATGCGCTAATGAATAATTGATGGGAAATTGCTCATT-ATGTAAACAGAACAGGAACACGCTACAGTTGTGGAGACAGTGATGACAATCTACATCCGGGGCAATATGTGGCATCTG------------------CATGAGACCAG--------ACAGA-GGATGTGGAGGGTGGAAGC---------------ACAGAGAGGCCTTGGCCAGGGGTGAAGGGGACAAGAAGCTTCCCTGGGCTGGTCCTTCATACA--AGTAACTGT-----------------------CCCCCTACCCC--AACCCAGT-------CAGAGATACTT-CCCTGTCTAGTGCTCTTTGC--------------------------ACTTCTCCCTCAGCCAGGGTTGGATTC--ACAGATCATCTTTCTGGCCTGGCCAACACACCATGTGAGCTAAAAACATCT-CTGTCTCTTCTGCTAGAGAGCATGTGGCTCCCCAGT-CGCCTCAGGACTACTGCTCTGGT------------------ATTAAATCAGTATTAAGACCCTCGGTGCAG-----GGGA s canFam1.chr18 28798581 544 + 66173745 CCCAACTTTGGGGAGCAGGGGAGCTCGGGGGGGGGTTACAAACTGCCTGCATTCTCATGG---------TTGTTGCAGGCAGAAAGCAAGCTAACGAACTGTTAGTGGGAAATAGTTCACTGAAGTGAACAGAACAAGAATGCCACAGAATTATTAAAATCATG------------GCCTGGAGGACCATGTGGCATTCT---ACAGCTTTCAATTCAGATGA--------------------GCATGCTGGGGTAGGATGTGGGGGGCACGGAG--ACGGGGTGGGGGCAGCCAGGGGTCAGGTGGATCAGAAGC-CCCCTGGATCCATTCTCTGCAAACGAGCATCT-CTACCAAGCCCCCTCGCTCCTGCA-------------TGCCCACCCCGCCCACAGGGCCCCCTAATCCAGCTGTTGCTTATTAT---------CGACGAAAGCAGGGACCCCTCCCTTCTAAACCAGAGCCTGA---------------------AGCAGAC---CAGCCAA-GTAAGCAGGAAGCAGCCCCTGCCACTTCTGCA------CAGCGGGCCCCCGGGCAGCCTCCAGGGCC-------TACTTAGGAAAACGGACAGACCCTTAGA-----ATCATCGTCCTCCAGTAAA-ATTTAGAA a score=1175.0 s hg17.chr17_random 1533063 5 + 2618010 TTCTC s panTro1.chr19 78897742 5 + 82489036 TTCTC s mm5.chr11 118591547 5 + 121648857 CTCTC a score=191.0 s hg17.chr17_random 1533068 2 + 2618010 AC s panTro1.chr19 78897747 2 + 82489036 AC a score=1855.0 s hg17.chr17_random 1533070 23 + 2618010 GGccccatctgcattctcctttt s panTro1.chr19 78897749 23 + 82489036 GGccccatctgcattctcctttt s mm5.chr11 118591681 14 + 121648857 GGCCCCAAGGGC---------TA a score=23588.0 s hg17.chr17_random 1533093 242 + 2618010 ttgtgcca-atagcaggattctcgatattcagctgggcacctcatcgtccaggataaagaccacgccntcccgg-----------gctgggtgtgagtctgtgactactctcccacncgatgggatantacacagaagtgacagctccagctcccgggtcacacactgaagg---------gggca-------tccccccatctctaccgc----atgtttgcaatgcggtgnaattgtgagnccttcttgggccaagcatgt-gggccgacacc s panTro1.chr19 78897772 237 + 82489036 tcgtgcta-atagcaggattctcgatattcagctgggcacctcatcgtccaggataaagaccacgcc-tcccgg-----------gctgggtgtgagtctgtgactactctcccac-cgatgggata-tacacagaagtgacagctccagctcccgggTCACACACTGAAGG---------AGGCA-------TCCCCACATCTCTACCAC----ATGTTTGCAATGTGG-GGAATTGTGAG-CCTTCTTGGGCCAAGCATGT-GGGCCAACACC s mm5.chr11 118591695 225 + 121648857 TAACGCTA-GCAGCAACAACCCTGACAATGAAGCTGGTCCCTCTCTGTCT------CAGACCACAC--TCAGGG------TGGCAGCTGGGTGTATTCCTGTGGTTGTATTGTGACAGAAAAGGAAA-T-----GGCGTGG------CAACCTCCAGGTCCTTTGCTAAAGGGA-----CAGGACA------CTCTCTATATCTTCTCCCCTAAGAGGTTTG---------TGAATTGAAAA-CCATTTTAGACCAAATGTG--GAAATAACATC s canFam1.chr18 28799154 255 + 66173745 TTATGTCAGATAACTGGA-ccccgacatttagct------------gtgcaagataagggccatacc-tcctggcctccctggcagccaggtatgatcacgtgactacactgtggc-caatgggatg-ta-aAACAAGGGGCACCTACAGCTTGTCGGTCATGCCATCAGGGGAGACCCCTGAGCTCACCCTCACCTCTCATTTCCTCCAC-CAGAGGCTTGGAATGTGA-ACAAAGGAGGA-CCCTCTGAGACCAAGCATGTGGAGGCAGCACT a score=3327.0 s hg17.chr17_random 1533335 103 + 2618010 cttaggatggggagtcccgagagagaaggtgctcg-agcctcc-ggtgacctcccggggctCAGCCACCTGCCTCCAGATGGTCACTTCTGAGAAAATTAACTTC s mm5.chr11 118591920 98 + 121648857 CAAAGGATGAGGAACCATAGGAGAGAA--TGCTGGCAGCCAC---GTGACCCTGTGGAACTCAGCCACTTGACTTGA-ACTGTCAATTCAAAG-AAATTCACTTC s canFam1.chr18 28799409 83 + 66173745 CTGAGGAC-AGGAACCCCAGAAGGAGA---GCCTG-GGTCTCCAGGTGACCTCCTTGAGCGCAGCCACCTCCCTCTGGACAGTCCCTC----------------- a score=825.0 s hg17.chr17_random 1533438 87 + 2618010 TGATCTGTGGAAGACCCATGGAAGCCTGGAGCCTCGGTCATGCTCAGCCTCATGTATGTCTTAACGGAAACACCATTTCTATCTCAA s canFam1.chr18 28799492 66 + 66173745 TGACTTCCTGAGGGCTC-----TGCTTAGAGTCCTG----------------TGCACATCCTAACTAGAACTATGTTTCTGTCTCAT a score=42658.0 s hg17.chr17_random 1533525 325 + 2618010 TTCAGCCTCGAGCCTCAGAATGAAACAGGAAGATGNCACCCAGCAAATAATACTTTTGGCATGTTACTAATAAAATAAGGaaaggaaaaacctggggctcagac-ggtcatctgatttgccaacagccacacacggaggtgtg-accaggctggggactgcaggagccctggccct---tccctgtccagggaatgtgccctctgaggagcctggtctgttattctgTTTCCAGCAGTAGTAATCAAGGNACCCTGGGCTCCCAGGTGACTTTGACCAGTGCCTCCACCTGATGCCACCTTCCCCCCAGGTGCATCTTCAACATAGCTTC s panTro1.chr19 78898236 323 + 82489036 TTCAGCCTCGAACCTCAGAATGAAACAGGAAGATG-CAGCCAGCAAATAATACTTTTGGCATGTTACTAATAAAATAAGGAAAGGAAAAACCTGGGGCTCAGAC-GGTCATCTGATTTGCCAACAGCCACACACGGAGGTGTG-ACCAGGCTGGGGACTGTAGCAGCCCTGGCCCT---TCCCTGTCCAGGGAATGTGCCCTCTGAGGAGCCTGGTCTGTTATTCTGTTTCCAGCAGTAGTAATCAAGG-ACCCTGGGCTCCCAGGTGACTTTGACCAGTGCCTCCACCTGATGCCACCTTCCCCCCAGGTGCATCTTCAACATAGCTTC s canFam1.chr18 28799558 310 + 66173745 CCTAGCATTGAACCTCTGCACAGAGCTGCACCA---CAGGCTACAGG-ATCACTGCTGATATACTTTGGGGAAAACAAAGAAagg--aaacctaaggccaggacaggccatcaga-ctgcca--ggccacacagtgaggcacgcacaaagctggggttggatggatctcctgCACCAGGGCCTGGGCAGGGGAGCGTGCCCTTTCCCATGCTGGGTC--TTGTTTTGTCCCCAGCAGTGGCAATAAGTG-ACCCTAAGCTCCCAGGCTCTTTGGACCAGTGCCCCTCCCAG--------TATCCCCCATGTGCATCTTTAAGACAGCTGC a score=192025.0 s hg17.chr17_random 1533850 1643 + 2618010 CCCCACCCCCTGGAGTGTCCA---------------------------------------------------------------GCTGGGCACAACCAGGC---------CCCATG------GCACCTGAGAAATAGGAACACAGCCTCCCCGGTGAAGT--AGAGGAGAGTTTAAGCCAGGACTTTGCCTGTGCCGAGGGCCTGGGAGCCGGGCTCAGCTCTG---CCTGCCTGCCAGGGATGGGA-----------CCAGGGCTCGGCTTTCTCCTCTGCTAA-----CAGGAAAGACCCCATAAGCCCTCAGGCCTGACTCCAGGAGTGAGACCTGTGATTCTATGTGAAACAGCCCCAGGCTGCCCACAGCAAGCCAAAGAATAAGAGCCCGCGCCTCTCCAAGGATCCGAGACCCAAGCAGCCTGGTGCCTTCTGCAAAACCTCTTCCTGCTTCTCTTCTGCAGGGAGCAGCGGCGTANGTGGCTGGGGTGGTAGGGANGGANGAGGTGAGCTGCTTATTGCTGGAGATGACTTTCCTCTCTC--CTCCTCCTTCTCTGGGCAGCTCGTT--TTTTCCAAAATAACTCTTCTTCCTCCCTCCCCAGGTTGCTAGTTTCTGTCTCTNCCTCCAGGCTTCCAAGTGCC---CCCTGCAAGGGCAGCCGGCGGAGGGAGCAGGGGAGG--GCTTACGTTCTCNAAGATGCAGAAGTACAAGCGTAGACNANAANAGAGACCCCCACGGTCCCCGTCAACCCCCTCACCTCTGNTTTGAGC--CCCCATCACTCCCCTGGGC-TGCCTCTCTCTGCTGGCGGCAGAACAACTGCACAGAGGCTCTGCTCAGGCCTGCTCCCCGCCCAAGGGTCCTCACAGCATCCCAGGCCTCAGAGAAAGCGGCTGCTTTAAGCATTTAAAAGCTCCTA-CAGGCTCAACTCCCCCTCCTCTGTTCCAGGACCCCCAACTCCAAACAAACAGGTGTGCTGATCTATGCTTGACCAGGCCGGAGCCCTGGTCCCCAGCTGCCCTTGGCTCAAGTCACCCTCCCAGCCTAGCACATCCTTCTGTTCCCCACCCCAAACAAGGACAGACCTAGGGATGACCAACCCCGG---------------------------CCTGGCCCCNATGCGCCTCCTGCTCAGACCTCTGCAAACCTGATCGTTTCCCCCTCGAAGACTCCCCTGGATTGTGGGACACCAGTTCTGATCTGAGATCTTAGGGCTAACACANGGAAATTAGGGGNATGGGTGCATAGATGCAATCCCTGCTTCATCACAAGGCCGCAGAGTCCTTGTCTGCCATGACGTGCCCGGGTTTAGACTGAAGAGGCAGGAGCTGGGGCCAGCGAGGGGAGCCCTGAACTCC----ATTCCttttaattgaggcgaaatnttatataacataaaagtagcca-tttaaagtgtgcaattgaggggcactcggtgcattcacaatgttttgtagccagcacctctatcttgctgca----ccttccatcatcccagaaggaaagaccttacccatgaggcagcaattccctgtctcccACCACTGGACTTTGTGTTTTCTTNNGGAANAGCTTTTGATCCGAGTGCCAATCTGCCCTCCAGAAAGGCAGATTGTCTATTTGATGATAAATAGACAAAAGGCAACTTTCTCCTATTATTCTTGCTTCACAGCACCGGCCCTTNTGGAATAGGAGCATCACACTGCCCTTGTCCCCTGGGCTTGACCACTGCCCCAAGCAACACGAGGGGG s panTro1.chr19 78898559 1623 + 82489036 CCCCACCCCCTGGAGTGTCCA---------------------------------------------------------------GCTAGGCCCAACCAGGC---------CCCACG------GCACCTGAGAAATAGGAACACAGCCTCCCCGGTGAAGT--AGAGGAGAGTTTAAGCCAGGACTTTGTCTGTGCCGAGGGCCTGGGAGCCGGGCTCAGCTCTG---CCTGCCTGCCAGGGATGGGA-----------CCAGGACTCAGCTTTCTCCTCTGCTAA-----AAGGAAAGACCCCATAAGCCCTCAGGCCTGACTCCAGGAGTGAGACCTGTGATTCCATGTGAAACAGCCCCAGGCTGCCCACGGCAAGCCAAAGAATAACAGCCCACGCCTCTCCAAGGATCCGAGACCCAAGCAGCCTGGTGCCTTCTGCAAAACCTCTTCCTGCTTCTCTTCTGCAGGGAGCAGCGGCGTAGGTGGCTGGGGTGGTAGGGAGG--AGAGGTGAGCTGCTTATTGCTGGAGATGACTTTCCTCTCTC--CTCCT---TCTCTGGGCAGCTCGTTC-TTTTCCAAAATAACTCTTCTTCCTCACTCCCCAGGTTGCTAGTTTCTGTCTC---CTCCAGGCTTCCAAGTGCC---CCCTGCAAGGGCAGCCGGCGGAGGGAGCAGGGGAGG--GCTTACGTTCTC-AAGATGCAAAAGTACAAGCGTAGAC---AAAAGAGACCCCCATGGTCCCCCTCAACCCCCTCACGTCTG-TTTGAGC--CCCCATCACTCCCCTGGGC-TGCCTCTCTCTGCTGGCGGCAGACCAACTGCACAGAGGCTCTGCTCAGGCCTGCTCCCGGCCCAGGGGTCCTCACAGCATCCCAGGCCTCAGGGAAAGCGGCTGCTTTAAGCATTTAAAAGCTCCTA-CAGGCTCAACTCCCCCTCCTCTGTTCCAGGACCCCCAACTCCAAACAAACAGGTGTGCTGATCTATGCTTGACCAGGCCGGAGCCCTGGTCCCCAGCTGCCCTTGGCCCAAGTCACCCTCCCAGCCTAGCACATCCTTCTGTTCCCCACCCCAAACAAGGACAGACCTAGGGATGACCAACCCCGG---------------------------CCTGGCCCCAATGCGCCTCCTGCTCAGACCTCTGCAAACCAGCTCGTTTCCCCCTCGAAGACTCCCCTGGACTGTGGGACACCAGTTCTGATCTGAGATCTTAGGGCTAACACA-GGAAATTAGGGG-ATGGGTGCATAGATGCAATCCCTGCTTCATCACACGGATGC-GAGTCCTTGTCTGCCATGACGTGCCCGGGTTTAGACTGAAGAGGCAGGAGCTGGGGCCAGCGAGGGGAGCCCTGAACTCC----ATTCCTTTTaattgaggtgaaat-ttatataacataaaagtagcca-tttaaagtgtgcaattgaggggcactcggtgcattcacaatgttttgtagccagcacctctatcttgctgca----ccttccatcatcccagaaggaaagaccttacccatgaggcagcaattccctgtctcccACCACTGGACTTTGTGTTTTCTT--GGAA-AGCTTTTGATCCGAGTGCCAATCTGCCCTCCAGAAAGGCAGATTGTCTATTTGATGATAAACAGACAAAAGGCAACTTTCTCCTATTATTCTTGCTTCACAGCACCGGCCCTT-TGGAATAGGAGCATCACACCGCCCTTGTCCCCTGGGCTTGACCACTGCCCCAGGCAACACGAGGGGG s canFam1.chr18 28800084 1522 + 66173745 CCCTGCCCCCAGAGGCATCCACAACACATGTCCACCATGACAAGATGCCGCTGAAAATGAGACCCTAACTTCCAGGGACTGTTCACCGAGCATGGCTATGTGGCTCCTAACCCATGAGGCCAGTTCCCAAGAAATCAGAAGGTGACCTCCCTGGAGAGGGCAGGCGGGCAGTCCAAggcggga--------ggacagagggcttgggtacctggcccagcacagccacctgtacgacagggacacaccattcacatctccaggactccactttctcctctgctaagggtgggggacaaaccccat-ggccccccagcacatctccagGA-------------------------------CAAGAT-CCCACCTGAAGCCATAGGA--------------------------------------------------TCGGCA---------------------CTGCAGGGAGCAGCTATGTCAGACACTGGGG-------------GCACGTGAGCTGCATATTGTTTCTGGGGATTTCCCTCTCTCCACTCCT---CCCACAGGAAATCCACTCTTTTTCCAAACTAGCTCCTCAGCCTTGTTCCCCAGTTTGCTAGTTT-TGTCTG--CTTCCAGGAGCTCCATTGTCACGTCTTGCAGGGTGGG--GGTGGGGGTGGCACCGCAGGAAGTGTATGATGCCCAAGCTGCAGAAAT----TCGGAGTC---ACACCAGGAGCCCTGGGTCCCCCAAAACCCTGCCCCTCCAG-GTTGGGCTTCACCATAACCCCTTAGAACATTTTTCCCCCCAGAGCTGGTGGAGCAATGGAGACAATCTTGTTCTCAGATCTGC-CCCTGCTCAAGGGTCCTTGCTGTGCCCCGTCCCCAACAG-----GGCTGC-TTGAGCAACTAGAAGCCCCCAGCAG-----ACCTCCCTCCCTCTG----------ACCAGCTCAAAATAGA---ACACATCGACCTCTCCTTGGCTGGGTGGCAGTCCCCGTCCCCAGCCCCCCCCACCTAGAACCCCCCCCCCCAAGGAG--------------CCCCACCCC---CAAAGACAGGCCAAGGGATGACGGACCCTGGACGAGCACTGTGGACCACGTGCTGACCCCTGGCCTAGATGTGCCCTCTGCTCAGCCTTCTACAGACCCAGCTGTGCTGCTGCTGCAGACTCCCCTGGACAGAGGA--GCCCGTGCTGATCCGCGACCTCAGGGCTGACACA-GCAAGCCAGAAG-----------CGGTGCGTTCCCTGCTCCATCGCAAGCTGCCGGAGCCCCAGGCAGTCATGACACACAACACATCAGGCTGAAGTGGCTGGGAGCAGGGCCAGCAAGGACAGCCTTGTGCTGCTTTTTTtttttttaattgaggtgaaat-ttgcacaacatagaattaaccattttaaagtgcatgactcagtagcatctagaaccttcacaagattgtgcaaccatcacc-ctatctggttccaagacatctctgtcat-ccaaaaggagacgttgtacccactaggcagacactccctgttccccGACTC------CTGTGCT---------------TTTTGATGCAGGTG----------------------------------------------AATAAAATACAATTTGCTC--ATTGTTCTTGCTCCAAAGCACCAGCACTCTTTGATCAGGACTGTCACACAGTCCTTGTGTTCCTGGCTTGACCACTTACCCCACCGATACTCGGGGG a score=0.0 s hg17.chr17_random 1535493 28 + 2618010 CATGAAGACCACAGCAGTGTCCTGAGCT a score=191.0 s hg17.chr17_random 1535493 2 + 2618010 CA s panTro1.chr19 78900182 2 + 82489036 CA a score=2962.0 s hg17.chr17_random 1535495 26 + 2618010 TGAAGACCACAGCAGTGTCCTGAGCT s panTro1.chr19 78900184 26 + 82489036 TGAAGACCACAGCAGTGTCCTGAGCT s mm5.chr11 118592926 25 + 121648857 TGTAAACAGGAATAAAGTCCT-AGAT a score=221970.0 s hg17.chr17_random 1535521 1068 + 2618010 GCCTTCCTGATCGACT---TTGCTATTTGCCCAAAGAAAGGAGTAGCTCATGCAGGGCCTTTGTTCANttcattgattcaacaacta-ttctttgccacctttgaagtgaccggctctggggcaggcagaggggcccacaggcacgagcaagatgcaatcctgccc-ccgtgccctgggntgtgngagttgggngagacaggtgggtgaacagccagataacaagtccacctggt-aagtgctctgagaaaaaCC-TGAAGAAA---------TAATCAACCTATAGGGTGGCTTTGCCATCTTCTCCAAATATTGTCCTCCAAATT---------TCATGCAGNCCATCTTCACCTCCCAGGCCATCTTTAACTACCAAANGCCAGGGCCACACATGCTGGGTGACACCTCAGCAT-GCagggacttgaaganggccactcacaaaagaagactgagaaatgactccaaagcagggacagtgt-cgaaccccaccagtca-ccaaagcaaagcaaatcaaaacaaaag-----cccacttccattttt-tccacctgccagattttgaaaatgcccattgcacccagtgcttcag--ggggtgcggggaaatga-cctctcattc--gcttgctggtgggattcgga----gtcagtgtaatctttctggagggcagattggcactcggatcaaaagctttccnaaatgtngtttaacctttaactcggcaattccacttataggaatttaccctaaggagaaactcagg-aacaaacacaaagacttatctnggaaagatttatgtactagaatatttgcanccattgctcataancatcaaaagattgaaaacaaactaaatgtccaactccagggtgcttggtaaataatttgtgcactcattaaaaatcctattgtagaagaata---ttgaatgccattgcaaagtgtttataaaccattaaatgaaaagatttataaaa--cagaatgtgcaaagcaatcccaTTATACTCCCCAGGCCTCCGAAGCaggctggaaggacaca-ctcctgggcctggcagcggtttcctctgtgtaagtggacgacgggctattttgtattttnctttttt-- s panTro1.chr19 78900210 1060 + 82489036 GCCTTCGTGATCGACT---TTGCTATTTGCCCAAAGAAAGGAGTAGCTCATGCAGGGCCTTTGTTCa-ttcattgattcaacaacta-ttctttgccacctttgaagtgaccggctctggggcaggcagaggggtccacaggcatgagcaagatgcaatcctgccc-ccgcgccctggg-tgtg-gagttggg-gagacaggtgggtgaacagccagataacAAGGCCACGTGGT-AAGTGCTCTGAGAAAAACCCTGAAGAAA---------TAATCAACCTATAGGGTGGCTTTGCCATCTTCTCCAAATATTGTCCTCCAAATT---------TCATGCAG-CCATCTTCACCTCCCAGGCCATCTTTAACTACCAAA-GCCAGGGCCACCCATGCTGGGTGACACCTCAGCATAGCagggacttgaaga-ggccactcgcaaaagaagactgagaaatgactccaaagcagggacagtgttcgaatcccaccagtcatccaaagcaaagcaaatcaaaacaaaag-----cccacttccattttt-tccacctgccagattttgagaatgcccattccacccagtgcttcaa--ggggtgcggggaaatga-cctctcattc--gcttgctggtgggattcgga----gtcagtgtaatctttctggagggcagattggcacttggatcaaaagctttcc-aaatgt-gtttaacctttaactcggcaattccacttatgggaatttaccctaaggagaaactcagggaacaaacacaaagacttatct-ggaaagatttatgtactagaatatttgca-ccattgctcataa-catcaaaagattgaaaacaaactaaatgtccaactccagggtgcttggtaaataatttgtgcactcattaaaaatcctattgtagaagaata---ttgaatgccgttgcaaagtgtttataaaccattaaatgaaaagatttataaaa--cagaatgtgcaAAGCAATCCCATTATACTCCCCAGGCCTCCGAAGCaggctggaaggacaca-ctcctgggcctagcagcggtttcctctgtgtaagtggacgacgggctattttgtatttt-ctttttt-- s mm5.chr11 118592951 963 + 121648857 GCCTTGGGGAGCAACTAACTCTCCTTTTGCCCAGAAAAAGCAGAGGCCC-TGGGAGGCCTCT------TCCACTGAGTCACAAGCTG-TCTTTAG---------------------------------GAGAGGACTGCAGGCAGAGAGAAGGTGGG----TGCTC------CCCTGGG-CATGGATGCTAAGCCTGGCAGATGGG-AAGCACTCAGTGACCA----CACAAGGC-GAGAGCTTCCAGCAAAA---TGTAGGAAGCCCGCCACCCACCCACCCACGGAGGAGCCCTGACATC-TCTATCAATATTTTCGTCCACAGTCCCACACACTCACACAA-CCATCCTCTCCTCCAACTCCATCTTTAAATGCCAAA-GACGGG--CGCATATGTTGGAGGACACCATCACAG-GCAAGG-CTGGAAGA-GGCAATCCACAGAGAAAGACTTAAAAATGAC-CCAAAGCA--------GT-TGGACCTTACCACTCA-CCAAGCCAATGAAAACCAAGACTAAAAACATCCCCAACTGCCCTACT-TTGACAGACCTGCTTGTGACGGGGGCTGGTGCATGCA------CAAGTGAGGCACAGGGACCTGA-CCCCCCCCCCATGCTCTCCCGTGAGACCTACACTTGCTTACCTTCGTCTTTCTGGCAAGCAGAGCCGTGTGCCCGTCAAACGCTTTCG-ACACGC-AGCTAAGCTCTAGCTGGGAAATTGCACCTGTAGG-ATTCACCCC-AGGAGAAGCTCATA-AACAAATGTGCAGTTTTGCTT-AGGAAGACTTATGCGCCCGAATAGCCTCG-GCATCGCAGCTAA-CATCAAAAGACAGAAAACAAACCAAGCGTCCAGCTCGGGGGTGCTCGGTAAATAGCTGGTGCATTCATTAAAAATCCTACCACAGAAAAAAACCTTTGGGTGTCACTGCAGTGTGTTCATAAGCCAC------AGGAGGGTTGGAAGG--AGGAACT-------------------------------------GCAGGGTGGAAGGGCA------------GTGACACCAA-GTCCTTTGCAAATTTGGACAACGGGTGACTTTGTGTTTT-CTCTCTT-- s canFam1.chr18 28801606 1030 + 66173745 ACCTTCCCAA---------CTGCCTTCTACCCAAAGGAAGTAATTCCTCATGCAGGATCTCCattca-ttcgtggattcaacaagtatttctcaggcacgttctaagtgtccagctttgggtcaggc--agtgacccacaggcctgcaaagggtccaatcctgccatccaggcgctggg-tgcc-aagctgga-ggagcagatgggtaaacagctaaaggacaatgccacatggtaaagcactttgagagaaaca-tgaagAAA---------TATTCCACCCACAGAGTAGCCCTGCCATCCTCCACGAGCATTTCCATCTGCACGCCCACGC--CAGCACGG-CCACCTTCATCGCCAGCGCCATCTTTACATGCCTGA-GACAGGGACACGTGTGCAGGACAAGACCACAGCC------------------GGCAACtcacaaaagaagactttaaaaggaccccaaagtg-ggaaggtgt-ctgatctcaccagcca-ccaaagcaatgcacatctaaacaaaaa-----cacacttccatttttctccaccagctggattctgaaaccgctgattgcatccagtgcttctg--------ctgggaaatgaccctctcgcgc--gcttgctggtgggatccgaa----gct-gcgtaatcctcctggagggcagattggcactcggatcaaaagctttca-aattgt-gtttaacctttaactcagcaattccacttgtaggaatttaccctaaggagaaagtcagg-aacaaatgcaaagatttatct-ccaaagatttatgtactagaatatttgca------gcttatgg-cttc-aaagactgaggacaagctaaatgtccagctgca-ggtgcatggtaaataatttgtgcactcattaaaaatcctattgtagtagaaca---ttgaatgccactgcaaagtgttcataaGCCATCAAATGAAGAGGTTTATAAAAACCAGAATGTGCAGTAAGTGCCAATTCCATGCCTCCAGCGTCCAG-ACAGGATGGAAGGATGCAGCCTCCAGGGCTGGCAGCAACTCCCTCTGTAGA--TGGACATCGGGTGGTTTATTCATTC-ATCTTTTTT a score=150461.0 s hg17.chr17_random 1536589 979 + 2618010 gaattttatgattatanttctaaattttctacattggatctgaatcgtatttgtaattaagnaaaaCTATAAGGAAAAATTT--TTTAACTTGGTAAGGCATGTCATGGATCCAGTTTCTCCCCCAAGGTACCAGCTCACAGGGGAAGGAAGACTAAAGGACTG------------CTCCCTGATGAACGTGGGGATCCGCCTGTAGGGTTTCCACGATGCTCGAGAACCCCGCAGAGTCTCAGGCCTTTGACCAAGAAGACTCCAGAGTGAGCGCCTTAGGGAAACACGGTCGGCCAAGCATGCAGCACCTCCGTGCCCAGACTGGATACGGCACTAATGATGCAAACAAGTCATCGCTCAGTCAGGGAGATGGGTCATTGTTGCTGTTGTTTTTATTTGTTGTTCAGTGGCCAGATGC-AAACGTGTTGCATAAGAGCCACCCAGA-GGCGGCTTGAGCTCTTCTCGGAGGAAATGTGGGTACTGTGTTGCTTGATCCTGCCTCTTGACAGTCCTTTCCAGATTCAAGTTTAAATGGGTTTGCCGGTATCAGGATGTTAGGGGCTCTCCAAATGCCAGTGGAGCAAATGGCCCATTG---CAGACACATTTCCAACCCTCATCAGGGGCTTCTCAGGAAAAGGCCCAGCCCGTGTTAATTATTATTTGAACACAAGTTCNTGGAAGTTTCATCCTTACAAAATA----TTTTTAACGCTCGTGGTTCAGGAGAGGAAGGGAGAGAAG---------TGAGTaacacttactgactccctactatgcactaggcacctaacgtgtattttctcgtttaacccntc--aaaataatgcagcgnggtctgcattattgaccccagtttacagttgtggaaactgagtctctgagagtc-----------------------------------taagtgacccagacctgcaaggtttgctcagcacccagtagcagGCTTCCCCCAGAGCAANGCAACCCGGAAAAGCACGACAGCCCCCGCCCCACGAGGTGGAGGCCACAGTCTCT s panTro1.chr19 78901270 986 + 82489036 gaattttatgattata-ttctaaattttctacgttggatctgaattgtatttgtaattaag-aaaaCTATAAGGAAAAATTT--TTTAACTTGGTAAGGCATGTCATGGATCCAGTTTCTCCCCCAAGGTACCAGCTTACAGGGGAAGGAAGACTAAAGGACTG------------CTCCCTGATGAACGTGGGGGTCGGCCTGTAGGGTTTCCACGATGCTCGAGAACCCCGCAGAGTCTCAGGCCTTTGACCAAGAAGACTCCAGAGTGAGCGCCTTAGGGAAACACGGTCGGCCAAGCATGCAGCACCTCCGTGCCCAGAATGGATACAGCACTAATGATGCAAACAAGTCATCGCTCAGTCAGGGAGATGGGTCATTGTTGCTGTTGTTTTTATTTGCTGTTCAGTGGCCAGACGC-AAACGTGTTGCATAAGAGCCACCCAGA-GGCGGCTTGAGCTCTTCTCGGAGGACATGTGGGTACTGTGTTGCTCGATCCTGCCTCTTGACAGTCCTTTCCAGATTCAAGTTTAAATGGGTTTGCCGGTATCAGGATGTTAGGGGCTCTCCAAATGCCAGTGGAGCAAATGGCCCATTG---CAGACACATTTCCAACCCTCGTCAGGGGCTTCTCAGGAAAAGGCCCAGCCCGTGTTAATTATTATTTGAACGCAAGTTC-TGGAAGTTTCATCCTTACAAAATAAATATTTTTAACGCTCGTGGTTCAGGAGAGGAAGGGAGAGAAGGGAGAGAAGTGAGTaacacttactgactccctactgtgcactaggcacctaacgtgtattttctcgtttaaccc-tc--gaaataatgcagcg-ggtctgcattattgaccccagtttacagttgtggaaactgagtctctgagagtc-----------------------------------taagtgacCCAGACCTGCAAGGTTTGCTGAGCACCCAGTAGCAGGCTTCCCCCAGAGCAA-GCAACCCGGAAAAGCACAACAGCCCCCGCCCCACAAGGTGGAGGCCACAGTCTCT s canFam1.chr18 28802637 982 + 66173745 GAATTTTATTGTC-TA-CCCTAAGTTTTCTACATTGGACCTAAAC--TATTTGTAATCAAG-AAAAATACAAGGAGTGTTTTTATTTAACTCGATTAGAAATGTTACAGAGTTGATTTACCCTCCAGGGGACGAGCTTGATGGGGGGGGGGGTGGGAGGGACCGAGGATGGAAGGCATCCCTGATGAATGTGGGGAGCCACCTGCAGGGTTT--------------------GAAGGGTCTCATGCCTTTGACCAAGAAG----CTGACAGAGCGCCTCGGGAGAACACGGTCGGCT--GCGCGCTGCACCT-CGCGAGCTGACTTGACACAGCGCTGATTATGCAAATCAATCACTGGCTAATCAGGGAGATGTGTCTTTGCTGCTGTTGTTTTTATTTGTTGCTCGGTAGCCAGACTCAAAACATACCGCAGAGGAGGGACCAAGACGTTGGCTTTCTTTATTCTAGGAGGAAATGTCCATGACATGCCGC-CGATCCAACCTGCTGATGCTCCTTT-CAGACCAGGCTGTACGTTGATTTGCCTGTGCCACGGC----AGGGCTCTCCAAGTGTCATCGGGGCTCACAGACCCCTGCCACGGCCAcactctggccctccctcagcctcttctcag---aaggcccacacccag--ggtgatcatttgaaCTGTAGTTC-TGGAAGTTTCACCATTATGAAATATGTATTTTTAAGGCT-ATGACTCGTGAGAGGaatagaacaaaa-------------tgacatttactgaattcctaccatgtgtgaggcacctaacatgcattttctcatttaatct-tcaaaaaacaatgctgtgaggtcaacatgattgtccccagcttacagataaggaaactgagtctctgagggTCttttttaattttttatttttttttttttGAGAATATAAATAACCCACACTTTTGGGGCTGGctcaggacttggcagctggcttcccccaaaacaa-gccatctgagagagcacgagagagtcc------caggaaagaggccgcaggcttt a score=61590.0 s hg17.chr17_random 1537568 736 + 2618010 TCAGAACCTCATGGCCAGGGACGGCCGTCAGAGCCAGAGTCCACTCAGACAGCAAAGCAAGTCGTCTCTCCACTACCTCACGCCAGTGCCTCTTNGcatttggattaanccnagggtgatttctaaatctggacgtccatcctgcagcccacacagggntgcagtcaaccctctggggtgggactcgcatcaggacgttgaaacctcccccggcggctccagtgtgagaaccactgCAGATGTGGGAAGGAACCCNTCCAGCCTTCAAANTCACCACATCATCTGCCTCGGCCATCTCAAGAAATTCATCAGGNAAGTGTGGGTCTAAACACTCTATAGATGCCCCCAGGGTCAAGAAGGAGACACGGGCAGTGAGAGTGATTCCAGGAAGAAAGTCGTTGACTGCAATTCACACGGTGCACGGGCCTATTTGGAGGCTTAGGGAGGACCCAGATGTGAATTTACAAGCCNAGTGTCAGACACCANGNCTTGTACACTCATCTGCCTTTCAGGGNACTAGGTCCTCCCAGACCAGGAAGACATCCACCTTCAGCGTCCAGACTGGGGTCCATGAGGGACCGGCCAGGGCTGACCACACGGNGGCCTGGGAGGCACCACCTTCCCCACCATTTCTCATGGTATTGACCTTTGATTATGTTCTCAAGGCACCGAGGNAAGTGTCTTCTCACCGCAGTGTCTCAGGAATTNCCCTGCAACCCTCNCCCAGTGGCTCACC s panTro1.chr19 78902256 721 + 82489036 TCAGAACCTCATGGCCAGGGACGGCCGTCGGAGCCAGAGTCCACTCAGACAGCAAAGCAAGTCGTCTCTCCACTACCTCACGCCAGTGCCTCTT-Gcatttggattaacc--agggtgatttctaaatctggacgtccatcctgcagcccacacaggg-tgcagtcaaccctctggggtgggactcgcatcaggacgttgaaacctccccaggcggctccagtgtgagaaccactgCAGGTGTGGGAAGGAACCC-TCCAGCCTTTAAA-TCACCACATCATCTGCCTCGGCCATCTCAAGAAATTCATCAGG-AAGTGTGGGTCTAAACACTCTATAGATGCCCCCAGGGTCAAGAAGGAGACACGGGCAGCGAGAGTGATTCCAGGAAGAAAGTCGTTGACTGCAATTCACACGGTGCACGGGCCTATTTGGAGGCTTAAGGAGGACCCAGATATGAATTTACAAGCC-AGTGTCAGACACCAGG--TTGTACACTCATCTGCCTTTCAGGG-ACTAGGTCCTCCCAGACCAGGAAGACATCCACCTTCTGCGTCCAGACTGGGGCCCATGAGGGACCGGCCAGGGCTGACCACACAG-GGCCTGGGAGGCACCACCTTCCCCACCATTTCTCATGGTATTGACCTTTGATTATGTTCTCAAGGCACCGAGG-AAGTGTCTTCTCACTGCAGTGTCTCAGGAATT-CCCTGCAACCCTC-CCCAGTGGCTCACC a score=29702.0 s hg17.chr17_random 1538304 233 + 2618010 TCTCAGGAGGAGCTGCCCACACTTCCCTAGAGCGGGGGCCAGAAGATGG-AGAAATGATGGAGACCCATCTTCACGGGCCTAGCTCCAGGACACAGGCAGACCCAGCCACCCTCAGGCTGCTCCCCCTGGAAGAAGGATGCCAGCTCTGTGGGGTCCCTGGAGTGTCGTTTAT-AATTGC-CCTTGCACAGCACCCTGACGGAGGGTACCCAGCAGATCCCTCAAGGTTCTCCCTG s panTro1.chr19 78902977 233 + 82489036 TCTCAGGAGGAGCTGCCCACACTTCCCTAGAGCGGGGGCCAGAAGATGG-AGAAATGATGGAGACCCATCTTCACAGGCCTAGCTCCAGGACACGGGCAGACCCAGCCACCCTCAGGCTGCTCCCGCTGGAAGAAGGATGCCAGCTCTGTGGGGACCCTGGAGTGTCGTTTAT-AATTGC-CCTTGCACAGCACCCTGACGGAGGGTACCCAGCAGATCCCTCAAGGTTCTCCCTG s mm5.chr11 118596082 221 + 121648857 TCCCAGAAGGATATACCAAC----TCACAGAGCCCCAGGTGGAAAATGGCCTGACCAACAGGGATGTATCATCATGACGCAAGGGACAAGACAAGGGCAGG-TGAGCC-CCCATGTTCTGTTCCTACTGCAGGAAAGATGTCAGCCCTTTGGCATCTTGGAAGTACCATGTATAAACTGCTCCTTGCGTGACACCCTGACAGAAGGTACTCATCCGACCACC-----TTCTC---- a score=88156.0 s hg17.chr17_random 1538537 347 + 2618010 CCCCCAGAGAATGAACAGCTCACGGAC-----------AGCAGAGCTCCGTGTCAT---CCGCC---TCCNTGCCAGGGCACAGGGGATCCTGGCANGCCGATGTGCCGTGGTGCCTGCGGNCAGGGCAGGCTGCGCAGGGAGACAG-CGAGCCCTCCGCGCTGCAGGAATGTGGGCCTCCTTCCTTGAGNAATGCAACATTTCNAGCAACCAAGAGACAACTCTATTGGGAGAACAAGAGCTAATTAAATTTACTGGGATCACTGAAGATGAAATTATTTAATATTCTGAACAGAATTTAATATTTGAAAGCACGAACAGCCNTTGGTTCGTTGTAGACGGGTTTTCCATCACCTGGGTCTGCA s panTro1.chr19 78903210 341 + 82489036 CCCCCAGAGAATGAACGGCTCACAGAC-----------AGCAGAGCTCCGTGTCAT---CCACC---TCC-TGCCAGGGCACAGGGGATCCTGGCA-GCCGATGTGCCGTGGTGCCTGCAG-CAGGGCAGGCTGCGCAGGGAGACAG-CGAGCCCTCCGCGCTGCAGGAATGTGGGCCTCCTTCCTTGAG-AATGCAACATTTC-AGCAACCAAGAGACAACTCTATTGGGAGAACAAGAGCTAATTAAATTTACTGGGATCACTGAAGATGAAATTATTTAATATTCTGAACAGAATTTAATATTTGAAAGCACGAACAGCC-TTGGTTCGTTGTAGACGGGTTTTCCATCACCTGGGTCTGCA s mm5.chr11 118596303 317 + 121648857 ----------------------AAGAC-----------AATAGAGCTCTGTGTCCCTTGCCACC---TCC-CACCAGGGCCCTAGGCACCCT-ACA-ACTGATGAGCTGAATACTTAACAGCTAG---AGGCTGTGGAGGAAGATGGCCCAGCCTCGAACACTACATGGCTGTGAGCCTCCTTCTTCATG-AA--CAGCATTTC-AGAAACCAAACGACAGCTCTATTGGGAGAACAAGAGCTAATTAAATTTACTGGGATCATTGAAGGGGAAACTACTTAACATTCTGAATAGAATTTAATCTTTAGAAGCACGAGCAGCC-TTGATTCATCGTAAA-GGGTTTTCTACCATCTGGGTTCACA s canFam1.chr18 28803665 322 + 66173745 CCCCCAGTAAGTGCTTCACAGACAGACCTCGGAGGACAGACGGAGCTCTGCGTCAC---CCGACCAACCC-CGCC-TGGCACAGGGA--CCCAGCA-GCTGAAGAAGCACGGTGCCAGT--------CCAGCTGTGCA---------------------CACCACAGGAGTCTGAGCCCCCTTCCTTGTG-AA-GCAACATTTC-AGAAACCAGGAGACAACTCTATTGGGAGAA-GAGCACTAATTAAATTTACTGGGATCATTGAAGAGGAAATTATTTAATATTCTGAACAG-ATTTAATATTTGAAAGCATGGACGGCC-CCGATCTATTGTGGGTGGGTTCTCTGCCACATGGGCCCACA a score=39712.0 s hg17.chr17_random 1538884 350 + 2618010 -TTAGGAGGATCCGTATACAGATGAGGGGTGGGGCCGGGGATGTGCTGCTTCTGGAAACCAGAGGAGATGGGAGAGGAACTGGAAATGGGCAGGAGGACAAAGTCCTCTTCAGGATCCTGGATGATTCTGCTCCACGNTTTCCAGAGGGACCCCTGTTGGTGCCTCTAAAGTGATGGAAAATCACAGTTGTGGTGCCAGGACCCCATGTCTGGGGTCTCTGACCACTGCCTGCCTCCGCTCCACCTATCTCTAACCCANGGGTCA-TTGCTGGCCAAGTCACATGGTGAAGTCAGAGGATCCGGAAGCCAGTGCTCTTCCCTGGCATGCACGAGTCCCCGGCCACACGCTCC s panTro1.chr19 78903551 348 + 82489036 -TTAGGAGGATCCGTATACAGATGAGGGCTGGGGCCGGGGATGTGCTGCTTCTGGAAACCAGAGGAGATGGGAGAGGAACTGGAAATGGGCAGGAGGGCAAAGTCCTCTTCGGGATCCTGGATGATTCTGCTCCACG-TTTCCAGAGGGACCCCTGTTGGTGCCTCTAAAGTGATGGAAAATCATAGTTGTGGTGCCAGGACCCCATGTCTGGGGTCTCTGACCGCTGCCTGCCTCCGCTCCACCTATCTCTAACCCA-GGGTCA-TTGCTGGCCTAGTCACATGGTGAAGTCAGAGGATCCGGAAGCCGGTGCTCTTCCCTGGCATGCACGAGTCCCCAGCCACACGCTCC s canFam1.chr18 28803987 310 + 66173745 CTGGGTGGGGTCCAGGTGCA----AGCCCATGGGAGGAGACTGAACCACACAGGGGACACAGAAG-GCTCGGGGAGGAGCTGGGAGCAGGCCGAGGGGCAAGGTCCTCATTGTAACCCTGTATGGCTCTGCCCCA-G-CCTCCACAGG--CCCCTGTTGCCACCCGTATAGCAAGACGAAGTCTTACCCATGAG---------CCTTGT---GGGTCCCTGGCATTTACCCACATGCACCCC-TCTTCCTGCAACCCA-GTGTCATTTGTTAACCAAGTTACAC-ACAAGGTGAGATGGTCTAGAAGGCAATGGAC-TCCTTAGAATG-----------------ATGATCT a score=26820.0 s hg17.chr17_random 1539234 314 + 2618010 TGTggcggagtacagtggctcacacctgtaatcccagcacttccggaggctgaggcaggcagatcctttgagcccaggagtctgagaccagcctgggcaacatagcaagaccacgtatctactaaaaaaaaaaaaaaaaaaaa--------------gttagcaaggcctgatggtgcacacctgtggttccagctancttaggaggctaagtaaggcaggaggatggcttgggcctggaggtcaaggctacagtgagctgtgatcacaacanctgtactccagccntgggcaacagagcaagaccctgccttgaaaaaTTTCATTTA s panTro1.chr19 78903899 325 + 82489036 TGTggcggagtacagtggctcacacctgtaatcccagcacttcgggaggctgaggcaggcagatcctttgagcccaggagtctgagaccagcctgggcaacatagcaagaccacatatctactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttagcaaggcctgatggtgcacacctgtggttccagcta-cttaggaggctaagtaaggcaggaggatggcttgggcctggaggtcaaggctacagagagctgtgatcacaaca-ctgtactccagcc-tgggcaaaagagcaagaccctgccttgaaaaaTTTCATTTA a score=80160.0 s hg17.chr17_random 1539548 796 + 2618010 AAACACTCCTGTATTCCACAGGGGACACTGAAAGAGAGATGGGCACTTTTACCAAGTCCCTGAGATACCCAAGTTTGGACCCAGTCAGGAAT--TTCTCAGCCATTTTTCCT-AAAGTCACTCTGCAGACCATCCACGAAGTTCCTCAAGGAGAGTT-TCTCCTAAAGGAGCTGTCGGCCCATGTTGGCAANCGCCCCACA---GTGTT----CACGGGGCCATGACTCGGCCTCCAGAGTCCGGGGC-TCGGTT---------TCCCCAGA--TACCCTGGAAAAACTGTGAGTACAGAGCCCAGGAGCCACA-GCTAAGACTCAGCCNACCTGGGGNCTCCTGCATGGGCAAAGTGGCC----GCCAGAAGACTCCCTGGAGAGCTTGACTGTGGGGCCCCAG-------------------GCCAGAGCCA--------------CTGTCAGTGCCAGCGGGCAAGGCCACCACCAACCGGANGAA----GCTCTG----GGCTCAGGTCATTC----------------------------------CGGGTGCACCCC---------------------------CTCCCCNGGGGCG---------------GCAGCTGCAG--GGAGAACACAGAACGCGTG--------------------------TCCACCGTAGGGAGGTGGGCTGGGTGGGCAGGNCCCCAGTGTGAGCCCTGCAGG--------------------GCCCTGGTCTCATGGA----TGCACAGGTGAGCCACC-----TCCTCACTGCCTGATCAAA-------CCCCAGATGGGCAGATGCCTCCG-----------------------------------------CAGGC--------------------CCCCAGTGGGACTTGGTGCCAGCCAGACTCCAGCGGCTGTTTTTTTTTTTAACTGTAACGGATTCTGTGTGCTCCACACCCTGAGGGCCTGGAGACTGGACATGCTTTGTAACTGAAATTAGAAGTCAATAAACCGAGGGCCAGGTGGGTCAGTAGAATT s panTro1.chr19 78904224 788 + 82489036 AAACACTCCTGTATTCCACAGGGGACACTGAAAGAGAGATGGGCACTTTCACCAAGTCCCTGAGATACCCAAGTTTGGACCCAGTCAGGAAT--TTCTCAGCCATTTTTCCT-AACGTCACTCTGCAGACCATCCACGAAGTTC---AAGGAGAGTTGTCTCCTAAAAGAGCTGTCGGCCCATGTTGGCAA-CGCCCCACA---GTGTC----CACGGGGCCACGACTCGGCCTCCAGAGTCCGGCGC-TCAGTT---------TCCCCAGA--TACCCTGGAAAAACTGTGAGTACAGAGCCCAGGAGCCACA-GCTAAGACTCAGCC-ACCTGGGG-CTCCTACATGGGCAAAGTGGCC----GCCAGAAGACTCCCTGGAGAGCTTGACTGTGGGGCCCCAG-------------------GCCAGAGCCA--------------CTGTCAGTGCCAGCGGGCAAGGCCACCACCAACCAGA-GAA----GCTCTG----GGCTCAGGTCATTC----------------------------------CGGGTGCACCCC---------------------------CTCCCC-GGGGCG---------------GCAGCCGCAG--GGAGAACACAGAACGCGTG--------------------------TCCACCGTAGGGAGGTGGGCTGGGCGGGCAGG-CCCCAGTGTGAGCCCTGCAGG--------------------GCCCTGGTCTCACGGA----TGCACAGGTGAGCCACC-----TCCTCACTGCCTGATCAAA-------CCCCAGATGGGCAGATGCCTCCG-----------------------------------------CAGGC--------------------CCCCAGTGGGACTTGGTGCCAGCCAGACTCCAGCGGCTGGTTTTTTTTTTAACTGTAATGGATTCTGTGTGCTCCACACCCTGAGGGCCTGGAGACTGGACATGCTTCGTAACTGAAATTAGAAGTCAATAAACCGAGGGCCAGGTGGGTCAGTAGAATT s canFam1.chr18 28804297 984 + 66173745 AAACACCCTTGAGTCCCATGGGGAACATGG--GGGCAGGTGAGCACCTTCACCAAGTCCCCGAGATA-CCAAGTCTGGACC---TTTGGGATGCTGCTCAATCTCATCACCTCGATGCCAC-CCAAAGACCAT-CATGAGGTCC---TCTGAGAAACCATTCCTGCAGGAGCTC------------------CACCCTGCACGTGTGTCTGGTCACCAGGACAGGACGTGTCCTCCAGAGCCCTGAGCAGCAGCTGACACCCAGCCCCCAGGCCTCTCCTCGGAGGCTTGCTGG----------AAGGGCCCCAGGCTGAGAGTCAGCC-TCC------CTCAT-CGTGAGCAGACGAGCCTGGGGTCACAGCATTC---AGGGAGC---GCCATGGCACTCCAGGTGCGTCACAAATACGGGAGCAAGAGCAGAGGGAACCGTGTGTCCATGAGGACCGTGGGCTGGGGCCACCACCAGCCAGGGGGACTGGGCTCTGCCAAGGCTAAGGCCAGCCACCCAGGAAACTCCACGCTTCTCTCTCCCTCACGCACGTACACCCCTCTCTGGTCCTCGTCACCACGACCTAACTCTCCCGGGGCACGAGTGTCGTCGTGCGCTGGTGCAGGCGGCAAGGACAGAGCCCATGGCACAGAGTATCCGCGCTGCAGCCCCTCCACC------CAGCGGCCT------------CCCCAGC-----CCCTGCAGGAAGCCTCAGTGGAGGAGGCTGCCCTGGGGACCTGGGAACCTGGGGATGGGAACCGGCAAAGGCCTCCACGGCCCCACCAGAGGCACTGCCCGAGACGCACAGAGGGCTCAGCCAAGAGGCGCGGAGCACAGAAGGACGTGCCGGGAGGAATCCAGGCCCGAAGAGTGCTACCACCAGCCTCAGGGAGACCTGGCCTCCCTCATACCTCAGCAGAGACTTTGGTTTTTG---GTAAGTGAT--TGTCTGCTTCATGCTCC-AGGGGCTGGAGATTGGCCATGCGTTATAACTGTGATTAGAAGCCAATAAACCCAACGCCAGGTGGGTCAGTCGGATT a score=6429.0 s hg17.chr17_random 1540344 15 + 2618010 -TCCATCGTGAGGCAT s panTro1.chr19 78905012 15 + 82489036 -TCCATCGTGAGGCAT s mm5.chr11 118597747 15 + 121648857 -TCCAACGTGAGGCAT s canFam1.chr18 28805281 16 + 66173745 TTCCATTGTGAACCAT a score=2958.0 s hg17.chr17_random 1540359 17 + 2618010 CGGAGGCTGCTCTCGGC s panTro1.chr19 78905027 17 + 82489036 CGGAGGCTGCTCTCGGC s canFam1.chr18 28805297 16 + 66173745 CAGAAG-TGCTCTCGGG a score=130866.0 s hg17.chr17_random 1540376 1034 + 2618010 ACATCAGCCCTGGCTCCTTCTCTCATCCTTCCAACCCTTCACCCCAGTGAGTGGGAGTTTCTAAG---AGCCCCGTGTCCTGATGTGCCACCCTTGGAAGAACAAAACCCTGAGACAAACTCGTATTTTGCTTTTTTTAATTGTCTCTCCCACTTTGCTTCCTGTTCAAACAGATTATCATGCACATCTGTAATCCCCACTTAAGCACCTAAGACCCCCTCTAAAATAACCCATTAATCCATTCCCACTCCTGTCTGCTGCTATTAACATGTTTGTCTTCGACGCCTTTGGCAGCTCATCCCCTTNCCTCACCGGGCTTATCTGCCTTGCCCGGCATTGGGCATCCCATCCAGAGGTGGG-AGGGGTGGCAGCCTGGAGCCCTGGAGGCCAGGGCCACCNTCCNANCANCCTNTCCCATGCTTCCCAGACGCCACCCTCACACTCTGCTTTCTGTACTGGTGAAGGAGACAGGTAAGAA-----CTGCAGATCCACCTGCCCTTGGCCATGGGTCAG-CCCTGCCCACCTCACCGCCAGAGCCACTGGTGAGCAGGAAAGGCT-GGGGCACCTCCCCTC-------GTCTACCAG---TAGGAAAAGAGTGAATCCCACNTTCCACCC---ACNACCCTCTATTCCATTCCAGGGGATCCAAAGGCCTTCCGCCCCTGCTG-TCCTCAAGACAGGCTAAAACCCACACCCAAAGTGGGCTTTCTGGGCCAACC-AACTATGGACACAGTACATAGCCTGCAAAGC-----CTCCTTGGACATCAGAGCTGCCCCAGAACCCCGGCGTTCCCATAGACCCGCAA------ATGGGGTTC--TATAGAGCACCCACTGCATGTCCGACTCTGTCTAAAGACCGTGGGTAACACAGAAGCATGAGGCACAGAGGGTCCTCAGGGAGCCTTCAGGGTAATTGACCAACTCACCCCTAAGACAACGGGAGGGAGCACATGGGCTGTGAGTGT---CTTGGCTGCACACAGAG-----------AGGCCTNACTGTTCTGCCATTTCCCATCCTCATGTCCTGGAACTTTCcttccatttcctcnaattataa s panTro1.chr19 78905044 1026 + 82489036 GCATCAGCCCTGGCTCCTTCTCTCATCCTTCCAACCCTTTACCCCAGTGAGCGGGAGTTTCTAAG---AGCCCCGTGTCCTGATGTGCCACCCTTGGAAGAACAAAACCCTGAGACAAACTCGTATTTTGCTTTTTTTAATTGTCTCTCCCACTTTGCTTCCTGTTCAAACAGATTATCATGCACGTCTGTAATCCCCACTTAAGCACCTAAGACCCCCTCTAAAATAACCCATTAATCCATTCCCACTCCTGTCTGCTGCTATTAACATGTTTGTCTTCGATGCCTTTGGCAGCTCATCCCCTT-CCTCACCGGGCTTATCTGGCTTGCCCGGCATTGGGCATCCCATCCAGAGGTGGG-AGGGATGGCAGCCTGGAGCCCTGGAGGCCAGGGCCACC-TCC--ACA-CCTCTCCCATGCTTCCCAGATGCCACCCTCACACTCTGCTTTCTGTACTGGTGGAGGAGACAGGTAAGAA-----CTGCAGATCCACCTGCCCTTGGCCATGGGTCAG-CCCTGCCCACCTCACCCCCAGAGCCACTGGTGAGCAGGAAAGGCTGGGGGCACCTCCCCTC-------GTCTACCAG---TAGGAAAAGAGTGAATCCCAC-TTCCACCC---AC-ACCCTCTATGCCATTCCAGGGGATCCAAAGGCCTTCCGCCCCTGCTG-TCCTCAAGACAGGCTCAAACCCACACCCAAAGCGGGCTTTCTGGGCCAACC-AACTATGGACACAGTACATAGCCTGCAAAGC-----CTCCTTGGACATCAGAGCTGCCCCAGAACCCCGGCGTTCACATAGACCCGCAA------ATGGGGGTC--TATAGAGCACCCACTGCATGTCCGGCTCTGTCTAAAGACCGTGGGTAACACAGAAGCATGAGGCACAGAGGGTCCTCAGGGAGCCTTCAGGGTAATTGACCAACTCACCCCTAAGACAACGGGAGGGAGCACATGGGCTGTGAGTGT---CTTGGCTGGACACAGAG-----------AGGCCT-ACTGTTCTGCCATTTCCCATCCTCATGTCCTGGAACTTTCCTTCCATTTCCTC-AATTATAA s mm5.chr11 118598176 826 + 121648857 GCACCAGCTCTGTCTCCTCCCATCACTC-------------CCTCAACAAAACAGGGCTTGTAA--------------CCCAGGGTGCCACTCTCCAAAGGTCAG---TCCAAGATGAGTCTGCATCTCCC---TCCCAATCGTACCTCCCACTCAGCTTCCTGTTCAAATGGATAACCATGTCAGCCTCCAGTCCCC----AAGTTCCTAAAGCCGTCTGCAACA--------GGAGGAAGGCCCGCTTCTGTCCATGGTTCTGAACCTGTGCCTCATCA--GCCTACAGGGGATCATTCCTTAATCTCC---AGCTTCTCT--CACGCCTAGCTTTGAGCATCCTGCCTGGAGAGGGGCAAGTGTGACATCCTCAAA-CCTGAAG------------------TCA------------------------------TATGTCCTGTGCCCTGTTCAGGAGGAGGAAGTTGGGGGCGGGGCCCCTCAGGCTCCACCCACACCTG--CCTGACTAAG-CCCTGCCCACTTAAC--TCAGAGCCTCTGCTGAATGG---------GGGGGGGCTCTCCTT-------ATCT--------------------------------------------------CGTGCCATTACAGGAGACCCCAAAACCTTTCA-CCTTGCTG-TTCTCA----AGGCTCAAACCCACATCCACAGTGGGTT-----------------GATGACCACAG---ACAGCATACAACACTGAAGCTACCTCACCCTCAGAACTGTCCGAGGAGTC---CCTTGCAGCACATCCATGACAATTTGTGAGGCTCCTTGCAGAG-AGCCAGTGTATGATCG--------------CCAT-GGTAACATAGAAGCA-GAGGCA-AGATCATCTACAGGGAGACTTCAGGACAACTAACCAACTCAGCCCCAAGCTAAAGAGAAGCTG----GGGGGTCTGACTGG---GCTGGCTGGGCACAAGA-----------AGACCC-A---------------GCATCCGTAT-CCCTGGAAC------ACCATCTCCTC-TGCTGTAA s canFam1.chr18 28805313 875 + 66173745 -GCTCGGCTGAGCCTCCCCGTCCCGTCC-TTGGACACCTCACCTCGACTC-TGGGAGTCTCCGGAGCTGGCGCC----CCCGACGTGCCAGCCCTGGACACACAGAACCC--AGATGA----GGACTTCAGTTTGTCTAACTGCCTCTCCCACCTAGTCCCCTACTCGAGCTGAGGTCAATGTAAGTCTGTAGCCCCCATTCCAGCACCTAGAACCCCATGAAATA--------------------ACCTCTGTGC-------------------TCGGTG--GTCTCCGGGAGCTCAGCCTCTG-CGGCACTAAGCTCACCTGGCCCGCC-GACCCCGGGAATC--GGTCAGAGGCAGGGAGGAGTGACCACCTGGAGCCCCTGAGTCCAGAGGGGCC------TGG------------------GAATGCGGCCTTCATACTCCATTTTCCAT------GAAGAAT----------------TTACAGATCCCCCTGCACTTGCCTATGGGTCAGCCCCTGCCCACCGCACCTTCAGAGCCCCTGTGGAGCAG---------GAGAGATCCCCTCTCCCTGCAGGTCCTCAAGGGCCAGCAGCAAAGCGAACCCCAC-TCCCACCCCATATGACCG--TGTTCCATTCCAAGGGACCTGAAGGCCTTCTG-CCCTGCTATTCCCCAAGTCAGGCTCAAACCTGCATCCAACGAGGGCCTTCTGGGCTATCAGAACTGTGGACACAGTGCCCGGC-TGCAAAGC--------------------TGATGACCCAG---CC----------------------------CCAGGGGTT--CATAAAGCACCCACTGTGTGTTCCAATCA--------------GGTAATA-AGCAGCAGGAGGGACAGACCATCTTCGGGGAGCTGTCAGGGCAGCTGACTC---------------------AGAGAGGACATGAGCCATGAGAGGGGACAGCGCTGGCCACAGAGACGCAGCACCCAGGCCT-CCCACCCCGCCATCTGCCGTCTACACTTCCTTTA---CTTCACCTGTTTCCTT-gactagaa a score=846.0 s hg17.chr17_random 1541410 3 + 2618010 aac s panTro1.chr19 78906070 3 + 82489036 AAC s canFam1.chr18 28806188 3 + 66173745 aac a score=28166.0 s hg17.chr17_random 1541413 311 + 2618010 tggggagcaatggctcacacctgtaatcccagcactttgggaggccgaggcgggtagatcacttgaggtcaggagttcgagaccaccctggccaacatgatgaaactctgtctctactaaaattacaaaaattagccaggtgtggtggcatgcacctgtaatcccagctactcaggaggttgaggcaggagaattgcttgaacccaggaggcagaggttgcagcaagccgagatcaccccactgcattccagcttgggcaataaagcgagactccatctcaaaaaaaaaaaaaaaaaaa----------aaaaaaaaaaac s panTro1.chr19 78906073 321 + 82489036 TGgggagcaatggctcacacctgtaatcccagcactttgggaggccgaggcgggcagatcacttgaggtcaggagttcgaggccaccctggccaacatgatgaaactctgtctctactaaaattacaaaaattagccaggtgtggtggcatgcacctgtaatcccagctactcaggaggttgaggcaggagaattgcttgaacccaggaggcagaggttgcagcaagccgagatcaccccactgcattccagcttgggcaacaaagcgagactccatctcaaaaaaaaaaaaacaaaaaacaaacaaaCAAACAAAAAAAC a score=3697.0 s hg17.chr17_random 1541724 17 + 2618010 gttggcactgacataga s panTro1.chr19 78906394 17 + 82489036 GTTGGCACTGACAtaga s mm5.chr11 118599002 17 + 121648857 GTTGGCATTGACCTGGG a score=92991.0 s hg17.chr17_random 1541741 680 + 2618010 tga-tatctaaggttccttctggctctcaaattgtctgcttctgtaattcAGATCTGAGTGGTGAGGCATGGGTAAGACACT--CCCAGAGTCTCAGG-----GATGCCNTGGTTAAGGGCTGGAGGGGGCATGGAAGGCTTCCTGGCATCACCAGGATGCAGCCCAGATACT----------CATGGGCCCTGGCACCTGGAACCATCTGCTCAAAGGCATCACGTGGCAACCTGATCGTCCCATCATCTTCCAAAGCCTCAGAAGAGCAGCTGAGAAGGA-TCCTGGGAGCCCTG--TCCTGTTACATAGGAGCTTCCCT-GCCACGT--------------------TCCCTTCCTGCCTCCTCCCAGACGATTCTCTTGGATGCAAAGCAAGAATCTGAGGA-GGCTG---AGAGAAAGTCACTTTCACCAGATG--ATAATATTACACATCATTTTAAAATCTGAGCA-TGGAGAATGGTTAAATGC---------TGTGTa---aaacatagaagacattaaaggaaaaacttctggctaaaaacaaac---aacttctgtact------ggaaaaaatagagactataaacaaagttaaaagaaatattacacagtgggggagagatttatatcccatataacaaaagattgatttccttcataaacaaaaagttacggcaaattaagaagtaaagcatgaacaacGAGTGGGAAAAATGCTGTttcacagaaaaatataaat s panTro1.chr19 78906411 674 + 82489036 tga-tatctaaggttgcttctggctctcaaattgtctgcttctgtaattcAGATCTGAGCGGTGAGGCATGGGTAAGACACC--CCCAGAGTCTCAGG-----GATGCC-TGGTTAAGGGCTGGAGGGGACATGGAAGGCTTCCTGGCATCACCAGGATGCAGCCCAGATGCT----------CATGGGCCCTGGCACCTGGAACCATCTGCTCAAAGGCATCACGTGGCAACCTGATCATCCCATCATCTTCCAAAACCTCAGAAGAGCAGCTGAGAAGGA-TCCTGGGAGCCCTG--TCCTGTTGCATAGGAGCTTCCCT-GCCACGT--------------------TCCCTTCCTGCCTCCTCCCAGACGATTCTCTTGGATGCAAAGCAAGAATCTGAGGA-GGCTG---AGAGAAAGTCACTTTCACCAGATG--ATAATATTACACATCTTTTAAAAATCTGAGCA-TGGAGAATGGTTAAATGC---------TGTGTA---AAACGTAGAAGACATTAAAGGAAAAACTTTTGGCTAAAAACAAAC---AACTTCTGTACT------GGAAAAAATAGAGACTATAAACAAAGTTAAAAGAAATATTACACAGTGGGGGAGAGATTTATATCCCATATAACAAAAGATTGATTTCCTTCATAAACAAAAAGTTATGGCAaattaag-----aagaatgaacaaccagtgggaaaaatgctgtttcacagaaaaatataaat s mm5.chr11 118599019 630 + 121648857 TAAGCACACCAGGTT-CTCCAGGGTCTAAAGGTGTCTACTTCTATAACTCAGGAACGAG-GTCAAGGCTCTGATGATACACAGGCCCCAAGGCTCAGA------------AGGGTAAGGACTGAAGAAGA--------ACTTCCTGGTATCACCAGCCCTTAGCCTGAATGCT----------CAAG---CCCAGCA---GGA-----------GAGGACTCCATGTAGCAATCTTATTGTC----TGTCCCTGGAGGCTTC--CCTGGCATCTTAGGAG----CCAGTGAGCTCTGAAGTCTGACACTCAGGGGCTTCCCCAGCCAGGTG---------TACACAAGGGTCCC--CCTGCCTCTTCCC------------TGCATGCAAGGCATGAGG-TCAGAA-GCCT-----GGAGATTTCACTCTCACATGACA--ATAATCTGA-ATGGTTTTTAAGGTTCCAAAAAGCAAAAAACAAACAAAAGCACACACACATGTGCACACACACATACA------------AAGGACTTTTGACTAAAAAAAAACAAAAACTGCTATAATCTTATATAGGGAAGCACAAGTTACACACCAAGTCAAAAA------TGCACAAGGAAGAACAAG--TGTGTCACATGGAGC-AAAGTTCATTTTCCTTCATAAACAAAAAGTCTTGGTAAATTAAT----AAGGAAAAGACAACCAACAGAGCA---GTCATTTGATACAAAGATACAAAC s canFam1.chr18 28806191 641 + 66173745 tga-tctcaagggctcctcctggctataaaactctctgctcctgtaattcAGGTCTACACTGTGAGGCATGGATGAGACAAG--CTTGGAG-CTCAGGGTGGGGGGGTCACAGCCAAGGGTCGGAGGGCTCCAGGATGGCTTCCTGGCA--ACTGAGGCTCAGCCCCACCCCTGCCCCTGCCCCATAAGCCCGGGAACAAGGGGTGATTT-CTCAACACCACCATGTGGCAATCTGAATGTTCTGTCCTCTT-GGAGGCTGCA-CACACAGGCTGGGAAAGAGTCCTGGGAGCCCGG-AGCCTGGCAGACGGGGCCTCCCTG-GCCAGGTGAGACCAGGTGAGGCCGCGTTCCCTCCCGGCCTCCTCCCAAACTGTGCTCTGGGGTGCAGAGCACAAAGCCAGGGAGGGCTGGCCAGGGAAAGTCACTTTCACGAGACGTAATAACATAATAGGTCACCTTAAAGCCC----------------TTAAAATT---------ATTGTA---AAG---------------------------TGATTAAAGATGACC---TA-------------------AGACACATAAACCaaaaaaaaaaaaaaaaaaaa-------------ggaaaaGACTT--------TCGACTAAAAGATGAACTTCCTTCACAAATAAAAAGTTCCATCAGATTAGTAAGTAAAGGACAAACAACCCATAGAGAAACCACCACTTTGTGTAAAGATATAAGT a score=0.0 s hg17.chr17_random 1542421 1 + 2618010 n a score=0.0 s hg17.chr17_random 1542421 1 + 2618010 n a score=15542.0 s hg17.chr17_random 1542422 124 + 2618010 ggtcattaaacataggaaaagaggctccacctcattcatcattaaaganaattcaactaatagncaagttacgattattaagtgtcaaagtggcaaaaatattaaataataccaggatagaaca s panTro1.chr19 78907085 122 + 82489036 ggtcattaaacataggaaaagaggctccacctcattcaccattaaaga-aattcaactaatag-caagttacgattattaagtgtcaaagtggcaaaaatattaaataataccaggatagaaca s canFam1.chr18 28806832 93 + 66173745 GATTGTTAAGCAGAGGAAAAGAGGCTC----------------------A--------AATAG-CAAGACACCATCACTTAGtgtcagagtaacaaaaatatttaaaatacccaatatttgaaa a score=75032.0 s hg17.chr17_random 1542546 579 + 2618010 aggttctgagcaaaaagacaccatttgatacatggtaggtaagtctataaattgataaa---cccacgtggaagacctatttggtgatatttattattttttaaatgtttgtgcctttgatctgaaaattccctttccaggaatctatcccactgatttaccctgacaagtaa----gc--caaggtggacataca---atgcata----------------aATGCAACAGA---------------AGCAGGAAATATACTATAGGGTG------AGGGG------------GAGTATTTTCAAAGTGAGATAGANGCTATATG----TGCTGATAGAACACTATATCCAAGATATATTGTGACCAAA---AAACAGT-------ACACATAAAATTCCATTTATGTAGAGAAAAAGGGATTATAAAGGATTNATGTGTGTGTGTGCATGATTTTCTGAATATACCTATATATATAATTTTCTGAAAAAAATACACTACCAATTTTACTGCTGGGCCATGGGAATAAAGNGGGGCATT---AAGAAAGG-NTCAACCAGGGAGACTTTAGTTTTCATTTTTTAACTTTTCTAT----------ACTGT-TTTCATGTTTTTGCTATGATCAAATATAATTTTTTAATAGAAAAATTGTTT-------TAAGAGA s panTro1.chr19 78907207 574 + 82489036 agg-tatgagcaaaaagacaccatttgatacatggtaggtaagtctatacattgataaa---accacgtggaagacctatttgatgatatttattattttttaaatgtttgtgcctttgatctgaaaattccatttccaggaatctatcccactgatttacCCTGACAAGTAA----GC--CGAGGTGGACATACA---ATGCATA----------------AGTGCAACAGA---------------AGCAGGAAATATACTATAGGGTG------AGGGG------------GAGTATTTTCAAAGTGAGATAGA-GCTATATG----TGCTGATAGAACACTATATCCAAGATATATTGTGACCAAA---AAACAGT-------ACACATAAAATTCCATTTATGTAGAGAAAAAAGGATTATAAAGGATT-ATGTGTGTGTGTGCATGATTTTCTGAACATATCTATATATATAATTTTCTGAAAAAAATACACTACCAACTTTACTGCTGGGCCATGGGAATAAAG-GGGGCATT---AAGAAAGG--TCAACCAGGGAGACTTTAGTTTTCATTTTTTAACTTTTCTAT----------ACTGT-TTTCATGTTTTTGCTATGATCAAATATAATTTTTTAATAGAAAAATTGTTT-------TAAGAGA s mm5.chr11 118599938 646 + 121648857 AACTCCTCAGTAAAAGGAAGCTCTGTGATAAACAATGGATTGG-CTGCACATTGGTAAACATCTTTTGTGGAGGGGATACTTTATG--TCCTATCAATTTTTAGATTCATACACCATTGACCTGATAATTTCACTTCCACGAACCTCTCCCACTGACCTAACCTCACTAGAAG----ACTACGAGATGGGTAGACATGGAAACATAATACTTTCCTATTAGGAAAACCACAGAGGGGACAAGTCCATTAGCAGAAGCCAAACTGAAGAGCA------TGATGTGA--TTGCACAGTGATTGTTCTAAACAGGGTAGATGGTGGGTAGCATTGTACATTGGACACTTTGTCTGAGATATATCGTAAACAAACAGAAACTGCCGGAATAACACATGAAATCCCATTTAGGCAGAGAGAAAAGAAGTATGCTTACAC-ATACGCATATAAACATATATACCTAACATTGTGTGTGTAGACAGTTCT---AAGAAAATATA-TAGAAATTTTACAAACAGATCTTGGAGTT-----GGGGGGCT---GAGAGAGGAGGAAGCCAGAATGTTCTTGGTCTTTGTTTTTTGGTTTTTTTTTTTTAACTTTCTCTGTGTTTAATGCTTTTACTACAAGCAAATGCA--TAGTCGATAGAAAGTTTTTTTTTTTAACTAAGAAA s canFam1.chr18 28806925 487 + 66173745 agg-aacgagtgaaaggacactctctgacacacagtaggtggg-attta-accggtgac---acctttcccaagggctgtttggtggtgtttactaatttctagacagcttcacctttgatctaacaattccacttccaggaatctg-cccACTAATTTATGCTCACAAGGCACAGTGC--CAACATTGTTA-------CAGCAGC----------------AATGTATTTGGGGGGTCCACCT----GCTGGGGAATAAATTATGAGGTGCCCATCTGGTGGCATGTTATGCAATCTTTCTTCTAAACAAGGGAGA-GCTATATG----TGCTGATAGAGCACCATGTCCA--------------CAAA---AAGAAAC---------------------------GTAACCGAAAAAG--------------------------------------------------------CAACTTCCAGAACAACATACA----CAACTTAAGA---------------------GAGGGACTGAAGAGACAGG-TTCAGCCAGGAA----CTGTCCTCTACTTTTGAACTTTTCTGC----------ACTGT-TTAAATGCTTTTGCCACAAGCAAACATACCTTTTTCACAGAGAAATGGTTT-------TAAGAGA a score=584.0 s hg17.chr17_random 1543125 3 + 2618010 GAT s panTro1.chr19 78907781 3 + 82489036 GAT s canFam1.chr18 28807412 3 + 66173745 AAT a score=797.0 s hg17.chr17_random 1543128 10 + 2618010 TTTTCTTTAA s panTro1.chr19 78907784 10 + 82489036 TTTTCTTCAA a score=37007.0 s hg17.chr17_random 1543138 360 + 2618010 AATGGTTTTAAGAACAGAAGTAAAAGTGTTTACTTTTACTTAACTTCAATCGCATACAAAACTCTTTTGTATGCAATGTGATCAGCTTTAAATGGACTATTATAACtataagatgttttatgtaagcctcactgtaatcacnaaggagtaaaatctctagtggatacacaaaagcaaaanggaatcaa-----------agtatgccactataaaa-aaatcaacaaatcatgaaggaa-ggcaggaagaaagaaaaaaaggaactacaaaacaatcagaaaacaaattaataaaatgacaagagtaagtttttgcttataaacatttacattaaatgtaaatagactaaattctccaaacataaga------------------------tgtaga s panTro1.chr19 78907794 358 + 82489036 AATGGTTTTAAGAACAGAAGTAAAAGTGTTTACTTTTACTTAACTTCAATTGCATACAAAACTCTTTTGTATGCAAtgtgatcagctttaaatagactattataactataagatgttttatgtaagcctcactgtaatcac-aaggagtaaaatctctagtggatagacaaaagcaaaa-ggaatcaa-----------agtatgccactataaaa-aaatcaacaaatcatgaaggaa-ggcaggaagaaagaaaaaaaggaactacaaaacaatcagaaaacaaattaataatatgacaagagtaagtttttgcttataaacatttacattaaatgtaaatagactaaattctccaaacataaga------------------------tgtaga s mm5.chr11 118600718 345 + 121648857 AATAGTTTAAAGAATAGACGTAGAA--------------------------GCATAGAAAG--TCTTAGTATTTACTG-GATTAG-TTGAAATAAAATTT------TACATGATGCTTTAGAAAACACTTAC--TAACCAC-AGGG---GAAAACTATAGTGGACACAGAAAGATAA---AGAACTAATAAACTTAGGGAGTATCATGACATAAAGTAAATGCTCAGAACTCAGAGGAACAGTGAGGAGTGAGCCAAAAA-----CAAAGAAATGTCAGGCTGGAAAATGATAAAGGGACTGGTGTGCGGCCTAAC-AACAGATAATCACATTTCA-GGGAACAGACTAAATTCTCCAAACAAAGGACAGGATGGTTCAAGGTTCAGGGACTGTGGA a score=57868.0 s hg17.chr17_random 1543498 556 + 2618010 atgtctgagtggattta--------------------------aaaaaaacaagat--------------------------------------------------------------------------------------------------tcaacaacatgctgcctataagagactcgttttagctttaaggatgcacatagactngaaagtaaagcgatgggaaaggatattccatacaaat---gataacatg-ggtggctatgcttatgtcagataaaatagactttaagtca------------aaaactgttataagagaaaaaggttactatataatgataaaagggtcatttctacaagagatataa-c----aaatataagtctatatgcactcaacatcagatcacctaaatatataaagcaaacattgaaagagctaaagggagtgatagacagcaatataacagtagtaggggactttnatatctcactctctatagtggacagatgattcagaaagaaaatcaataaggaaacagcaaaactaagcaacagtatagaccaaaagaacctaacacatatacagaactttctactcaatagcagaaaaatatacatttttctcaagtgcacttggaacattctccaggatagatcacatgtta-ggtcac-aaaaaaattttaacaaa s panTro1.chr19 78908152 556 + 82489036 atgtctgagtggattt---------------------------aaaaaaacaagat--------------------------------------------------------------------------------------------------tcaacaacatgctgcctataagagactcattttagctttaaggatgcacatagact-gaaagtaaagcgatgggaaaggatattccatacaaat---gataacatg-ggtggctatgcttatgtcagatacaatagactttaagtca------------aaaactgttataagagaaaaaggttactatataatgataaaagggtcatttctacaagagatataagc----aaatataagtctatatgcactcaacatcagatcacctaaatatataaagcaaacattgaaagagctaaagggagtgatagacagcaatataacagtagtaggggactttaatatctgactctttatagtggacagatgattcagaaagaaaatcaataaggaaacagcaaaactaagcaacagtatagaccaaaagaacctaacacatatacagaactttctactcaatagcagaaaaatatacatttttctcaagtgcacttggaacattctccaggatagatcacatgtta-ggtcacaaaaaaaattttaacaaa s mm5.chr11 118601413 645 + 121648857 ATATTTAAATAAATATAATAATATATAATAAATAAAAAACTATAAAAAAAGAAGATATTTAACACTGACATCTGACCACCAGGTGTACACACATGCACACACCACACACACACACACACTACCACCACCAACAACAACAGTAACAAAAAATGTCCCAACAATATGCTGCCTACAAGAAACTCCTTTAGGGTT---ATACATACATAAACT-GAAAGTGTAGACATAGCAAAAGCTGTTCCATGCAAATGAAGATGAAATGAGAAGGTTGTGGTTATACTACACAAGATCGATCCACACACACACACACACATCACAACTCCTACAAGAGACCTTGAAAACCAT-TAATTAT---------ATTCTTTAAAGTGAATTGAACATTAAAATAGTTGTGAATATTCATGC-ACATAAAAGTGTCC--ACAGGTAAGGTAAATGCCAACTGGTCTGAAGGGAGAGATGAACAGAAATACAGTAATAGTAGGAAATGTCAAAACCCTATGCTCTGTCATGAACATCTCACGCAGAAAG----TCCGAGAGGAGAGAGCAGAGTCAAATGGATGAGCAGAC-----------------------AAACTTCCCAC-CAACAGCAGAAG---ACACATTCTTTCCATAGACA----------TCCCCATGACCAACAATGAGTTAGGGTCACAAAAGACATCTTCACAGA a score=50044.0 s hg17.chr17_random 1544054 619 + 2618010 ttcggctaatgtctgtaatcccagcactttgggaggctgaggggggtggatcacctgaggtcaggagttcgagaccagcctggctaacatggtgaaaccccgtttctattaaaaatacaaaaaattagcctggcgtggtggcacacacctgtaatcccanntactcangnggatgaggcaggagantcncttgaacccaggaggnggaggtngcagtganccgagatcncnccattgaactccagcttgggcaacaagagcaaaactctgtcaagaaagggaaggnaaggggagcgaaggcgaanngaaggnngnggnaggggaggg----gnagangang-----------------------aggnaggggaggggnaaggnaggggaagggaggggaagagaaggnaagggaagggaagggaagggaagggaaggggaaaagggaaaggaaaggaattttaacaaattcaagatgatctaaattattccaagtaccttctctgaccacaatgagaagaaactagaaatcaataacaataagaaaattagaaaattcacaaatatgtggaaactaaataacacatacttgagcaaccattggacaaaagaggaaatcaaaagggaattttaaaaatatctcnag s panTro1.chr19 78908708 643 + 82489036 ttcggctaatgtctgtaatcccagcactttgggaagctgaggggggtggatcacctgaggtcaggagttcgagaccagcctggctaacatggtgaaaccccgtttctattaaaaatacaaaaaattagcctggcgtggtggcacacacctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcacaccattgaactccagcttgggcaacaagagcaaaactctgtcAAGAaagggaagggaaggggagcgaaggcgaagggaaggaa-agggaggggaggggagaggagaggaggggaggggaggggaggggaagggaagggaggggagggg-aagggaggggaagggaggggaagagaagggaagggaaaggaagggaagggaagggaaggggaaaagggaaaggaaaggaattttaacaaattcaagttgatctaaattattccaagtaccttctctgaccacaatgagaagaaactagaaatcaataacaataagaaaattagaaaattcacaaatatgtggaaactaaataacacatacttgagcaaccattggacgaaagaggaaatcaaaagggaatttt-aaaatatctcaag a score=27682.0 s hg17.chr17_random 1544673 258 + 2618010 a----caaaaacaaaaacacaat------acacca-aaatgt----atgggatatagcaaaagcagttccnaagaggnaagctnattaaaannaatgcctacatttttnaaaagaagangaaagattcnnaataaaca--actactttatatctcaaggaagtagaaaaagagaaaactgagctcaaatatagtagangaagggaaataatanggattagagcagacataagtcaaatagagaatagaaaaac-------aataggtaaaattaacaaaact---------- s panTro1.chr19 78909351 260 + 82489036 acaagcaaaaacaaaaacacaat------atacca-aaatgt----atgggatacagcaaaagcagttcc-aagaggaaagcttattaaaataaatgcctacatttttaaaaagaagaacaaagattccaaataaaca--actactttatatctcaaggaagtagaaaaagagaaaactgagctcaaatatagtagaagaagggaaataataaggattagag-agacataagtcaaatagagaatagaaaaac-------aataggtaaaatttaaaaaact---------- s mm5.chr11 118602623 268 + 121648857 ----ACCAAACCACACACACCATGCACACACACCATAAACATAAACATACAATACAGCACA-------CC-AACAATAAAAAAGTTTTAAATAACCTGATAGGCTTTTAAA--------GAAACATCTCAAAAAAATAACACTATTTTATATGTCGTAGAATTACAAAAAGAGTAAACTAAGCCCAA----AGTTGACAGAGGGGAAGAGTAAAGATTACAGTAGACATTAATTAAACAGAGAATGGAAAAACTAATAATAATATATAAAAAAAGAAAAGATCAACGTGACT a score=94.0 s hg17.chr17_random 1544931 17 + 2618010 gagttggtttttttttt s panTro1.chr19 78909611 8 + 82489036 gagttgg---------t a score=33381.0 s hg17.chr17_random 1544948 248 + 2618010 tttttt----aaataaaataaaattgac---aaacccttagcaatacaaagaaagagagaaggctcaaataaataaagtcagaaattttaaaagaggtattaaaatgaatgtctctgaaataaaaaagattataagggactatcatgtataattatatgccaacaaatgggataatctagaagaaatgcataaatttttagaaacatgccacctaccaaaactgagtcaggaagaaatagaaagcctaaacatcc s panTro1.chr19 78909619 252 + 82489036 ttttttaaaaaaataaaataaaattgac---aaacccttagcaatacaaagaaagagagaaggctcaaataaataaagtcagaaattttaaaagaggtattaaaatgaatgtctccaaaataaaaaagattataagggactattatgtataattatatgccaacaaatgggataatctagaagaaacacataaattcttagaaacatgccacctaccaaaactgagtcaggaagaaatagaaagcctaaacatcc s mm5.chr11 118603486 230 + 121648857 TCTTTT----AATTAAAAATAAATAAACATAAAATTCCTAGCTAGATTAACCAAAAGGAAAAGCTT-----AATAAAATCAGAA----TGAAGGAGAAGGCAGCATGGATACCTCAGAGATAGAGGA-ACTCTGAGAAACCATTATGAACAATAGCATGCCAAC-AATTGGCTAATGCAGGTAAAATGGATATATC------AGTGTACAACCTATCAAAGCTG----GAGAAGAAAGAGAAAGCTGGAACACTC a score=37882.0 s hg17.chr17_random 1545196 426 + 2618010 tatagtttggatgtttgtctcctccaatctcatgttgaaatctgnatccccaatgttgcaggtgggacctaatgggaggtgtttgggtcacaggagtggatccttcatgaatacgttaatgccctttcttagggaagaggggtgagcaagttcttgctctattagttcctgtgaaagnctggttgttataaagagcctggcacctccccacttgctctctcttgcttcctctcctgccatgtgatctctgcacaagccagctccccttcaccttctacatgagtggcagcaacctgaggccctcatgagaagcagatgcntggcatcacactttttgtagtctgtgagccaaataaatctcttttctttataaattacccatgctcagc---tattttatagcaagacaaaatggactaaaatacagaa s panTro1.chr19 78909871 426 + 82489036 tatagtttggatgtttgtctcctccaatctcatgttgaaatctg-atccccaatgttgcaggtgggacctaatgggaggtgtttgggtcacgggagtggatccttcatgaatacgttaatgccctttctgagggaagaggggtgagcaagttcttgctctattagttcctgtgaaag-ctggttgttataaagagcctggcacctccccacttgctctctcttgcttcctctcctgccatgtgatctctgcacaagccagctccccttcaccttctacatgagtggcagcaacctgaggccctcatgagaagcagatgc-tggcatcacactttttgtagtctgtgagccaaataaatctcttttctttataaaatacccatgctcagctattattttatagcaagacaaaatggactaaaatacagaa a score=6208.0 s hg17.chr17_random 1545622 50 + 2618010 aaatatcaaagaaggagactgaatctgtaatcaaaaaccactcaacaaag s panTro1.chr19 78910297 50 + 82489036 aaatatcaaagaaggagactgaatcagtaatcaaaaaccactcaacaaag s mm5.chr11 118603716 46 + 121648857 AGATGCT---GATGGATATTAACTCATTGGT-AGAAACCTCCCGACAAAG a score=572769.0 s hg17.chr17_random 1545672 6562 + 2618010 aaaagccntgantcaaatggcttcacagttgaattatatggaacaatca---aagaactaatactagttcttcttaaagtcttccaaaaaatagaaaaagagggaacacttccaagctaattttatttatttttttattttttattgt--ttatt-tttttttgagacagagtctcactctgtcgcccaggctggagtgcagcggcgcnaatctcggctcactgcaagctctgcctcccaggttcacgccattctcctgcctcagccntcccaagtagctgggactacaggcacccaccaccgcgnccggctaatttttttggtatttttagtagagatggggtttcactgtgttagccaggatggtctcaatctcctgacctcgtgatctgcctaccttggcctcccaaagtgnnctgggattacaggcgtgagccaccgcacccagccccaagctaattttatgaggctagcatcaccctaatagcacagtcagacaaagacaccacaagaaatgaaaactacagggcaatatctctgatgaacatagatgc-aaaaaaattcccaataagatantagtaaactgaactcaacaacacattaaaanggattatacattatgaccaagtggaatttatccctggaatgcaagaatggttcaacatacataaatcaatgttatatactacattaacagaatgaaagggaaaatctatataatcatctaaatagacatagaaaaagcatctgacaaagtttaacatccattcatgattaaaactctcaacaaaatagctatagaagaaacttacctcaacacagtaaaagcncataactaatatcataantcnntgggaaaaaaactgaaagccttactataagatctggtgcgagtaaaggatgcccactcccatcatttctattcaacgtagtacaggaagttctagccagtgctattagacaagaaaaagaaataaaagcatccaaatcagaaagaagtaaatttttttctatttgcagatggcaagatgatatacgtagaaaaccctaaaaactcaacaaccaaaaaactgctttaaaaaattctgtaaaattacagaatacaaagtcaacatacaaagatcaattgtgtttctatacacaacaattaagtatgtgaaaaggaaattaagaaagtaatcccattcacaatagcaacaaaaaaagacttaggaataaacttaaagaggttgagggcttgtacagtgaaaattataaaacattgatgcaggaaattaanagaaaatagacataaatgaaaggacatcctgtgttcatggattggaataattaatatagttaaaatgtgcataccacctaccacccaaagtgatccacaaattcagtgcaatccctatcaaaatcccgatggcattctttacaaaaac-gaaaaaataatcccaaaatttgtatggaatcacaaaagatcctgaatagcc-aagcaattttgaacaagaacaaagcgggaggcattacacttcttgatttcaaatatcacaaagctacagtaatcaaaatattatggtactgatataaaacagatatatagaccaatcgaacaaaatagagagcccagaaataaattcattcatttataatcaacagatcttcaacaagggtgccaaaaacacacaatggagaaanggctaatctctttaataactggtgtttaaaaaaactgaagattcacatacaggagaataaaactggactctcacctcactccatacacaaaaatcaacttaaaatggattaaagacatacatgtaagacccaaagccataaaactactagaagaaaacatagggaaaaaaacttcttaacattggtctggccaatgatttttttggatatgacaccaanaagcataggcaataattctaaaaataagtgagattgcatcaaactaaaaagcttctgcataacaaaggaaacaataaagccagggtgaaaaggaaagctatagaatgggaggaatatttgcaaatcatatatctaacaagaagttaatatccaaaatatataaggaactcaaacaacttaatagcaaagaaacaaataacccaagtttnaaatgggctaagtacttgaatgacatttctcnaaaagangtcatacaaatggccaataggtatatganaaggtggtcattattaactatcagagaaatgcaaagcaaaaccacagttagatatcccctcacacttgttaggatggctattatcnaaaagacaaangatancaagtatgggcaaggatgcgaagaaaagggaaaccttgtacattgntggtagaaatgtatgttggtacagccattagggnaaacagtatggagtccttaaaaattanaaatagaactaccatatgatccagcaagactacttctaggtatatattcaaagaaaatgaaatcagtttctcaaagagacaactgcacccccatgtttattgcagcattattcacaattgccaagatatggaaatgggaaacaacttaagtgtccatcagtaaatgaatggttaaagaagacgttacatacataatagaaaactattcagcctttaaaaagaagaaaatcctgccatttgcaacaacacaaatgaacctggaggactgatatgatttggatctgtgtccccacccaaatctcatgtctaattctaatccccnatgttggaggaggggcctggtgggaagtgattggattatgggggaggtttctcatgttttaacaccatctncccttggtgctgttgtgctgataatgagttctcatgagacctggttgtttaaaaantgtgtggcaccttccccntctctcttcctcttgctctggccatgtaaagtgctagctccccctgcaccttccaccatgattataagtttcctgaggcctccccagaagcagatgccaccatgcttcctgtacaacctgcagaactgtgaaccaattaaacctc-tttttttaatgagttacccagtctcaggaatttctttatggcaaagtaagaatggactagtacaaggacattatgttaagtgaaataagccagacacagaatgnacnaataccgcattatctcacttatatgtggaatctaaaaatgtcaaactcataaaaacaaataatagaatgatggctgccattgctgaagggtgggaggaaatgaggaggtgttggccaaaggacataaaggtccggttatgtgggataaataagttccagaaatctaatgtacattatggtgactatagttaataatagttgaaatttgccaagagggtagatttttaagtatcttcaccacaacaaaaaatactgcaactatgtgaagtgataggcatgttaatttgcttgattgcagtaaccatttcacaatgtatatatatatacaaattcatcatgttttacaccttaaatatatacaatttttatttgtcaagtatacctccataaagctagaggaaAGTATTTTAAGAAAGCATGCTGTCATTTTCTTGTGAATTTAATGATCTCTCTCACTTCACTTTTTTATTGTTAATGTCATATGGGCTTATTATAGGGAAAAAAAGTATAAAGTCTAGataaagtaaaaagtacagcagacaaagctaatatataaattaaaatggaacactaaaacaaacaaagttaaccacaaagaaggccgagaaggaggtacaaatgcacgagaaacagaggacacaaacagaaaacaaataggaaaatgatagatcaattctagccatatcaataagtacgcaaaataccaatggactaaatctttcagttaaaaggtggaggttatcagCTACAAATATAGATCGAGCACTTTTTAAAAGGCTTAAAATGagcctgagcaacatagagagacctcngtctctacaaaaaattaaattagcctggcatagtggtgcactcctatagtctcagctactcaggaggctgagctgggaggatcgctcaagcccaagagttcaaggttgcagtngagctgtgatcacaccactccactctggcctgagcaacaaagttggaccctgtctctaaaaaacaaaaGGCTTaaaaatgataccatgctaacaataagcataagaaggctagatgggttacattaatgaaaataaattagacttgaangacaatggatattaacagaaataaagagtaacatcacgtaatattaaaagatttaatttttaggaaaatatataattcgcaagcataaagggcctaagagaagaacttcacaatacataaggaaaaagccaaaagaattaaagggagaaatctatnaatcatagttggaaattctaacacccctcccttgacaactgatagaacaagtcaagagnaaaatctngaataacatcattaactactttgtcctaatagccatttatagaacactaaattcaacaactgccaaatactcattcttttcnaagtttacatgacatattcaccaagatagatcatgtgctgggccatttttttaaaagtcttcatacatttcaaaagattgaaacttgctgaatatgttttctgaccacacggaactaaattaaaaattgatgacaataagatatatgggaaaatcccccaaatatttggaaattaaacaatacatttctaaatattctataggtcaaagtagaaatcacaaagcacattttnaaaatatttcaaactgaacagtaatgaagaaacaaatatcaaaatttgtgaactatagctaaaataaagcttagagaaaatttgtagctttaatatgcttatattaaaaaagacgttctcaaattaatgaactaagcttctaccttacaaaactttttcttaaaaagtaattaaaaggaaataatacaaataatagcagaaattgagtaaatggaaaacagacaaaaagaaaattaacagagctaaaagatggttnctttgaaaagatcaataaaaaaagagaaaacaca----agagagatctctagaaatcctacatatattaaaaggttaataatggaatattaagaacaactttatgccaatacattcaactatttaaatgagantggacatatttctgaaaacacaacttaccaaaattgacacaagatgaaatagaacatttgagtagagattgaatacatcatcaaaaactttcccatgaaaaaatttcaggtccaggtggttttactggtgaattctatcaaaacattcaaagaagaaataattctactggaacttttgcagaaaantaaagaaagtaaaatcttcccagtatgctttatgaggccanacataactatgatatcaaaaactgataaagacattacaaagaaaagcacagactgacataactcatgaatatagaaacaaaaattctctacaaaatactagcaaaataaaattagcagtaacattgttgaattttatctcagcaatgcaaggtcttttatattaagaaatcctaaagaatctatnaacataactagaactaagcagtgtatttatcaagatcataatatacgtaatcaatacttaaagatcaattgtatttttatgtttagagataaaaataataaataacatntttttaaatccacttgcaatgatgccacaaataataaattttaaaataggtttaataacatgtgaacgaagtgtacgttggnaaattaaatatctcaggaagaaattaaaagcatctctgggncgaaagtaaagaagacctaaacaaatgaagacatatatcatgattatgtaagcagagaattccatattgctatgacgtcattttncttccnactcaatatagaaattcaatgcaactgtaatcagaatcccaacaggcttctttgtagaaattngacaagctggttctaaaatttttatggaaatgtggaaggctcagaaaatggcanactttattcttccaattgttcagaaaaacaaaacacctgtagttatcctcacctcctctcttcctttcaggcttcgtgtgtaatctagcagtaaacttgtgctgactctgccnttcacaatatactcagagtctaatcacttctcaccaattctgccaccactgctcggactcaagctgcccttaccgctcacctgggccatcgtgaagcccccgaacggtctccccacatccacaccccgccntttcgcttattcttctttcgctcattcttaggtcagttcatgtccctcctctgctcagaaccccaaaaccttgcgtgcaatgtccagcaagtgcacctgtngtggtgtgccccacccctcagtcccaccctcctcctcctgactagccacccgccagaaacaccgncctctttatgcgccaccnaaatgccaagcacactttggccacggagaccttgcagttctggtggcccctacctggaataatcctcctcagantatcctcatgcctcttccccacccttcaagatgatgctgaatgtcaccttctaagcgaggcttgcctgaggaccctcttaangacctcnataccttccagctgccccttct s panTro1.chr19 78910347 6524 + 82489036 aaaagccctgaatccaatggcttcacagttgaattatacggaacaatcaaagaagaactaatactagttcttcttaaagtcttccaaaaaatagaaaaagagggaacacttccaagctaattttatttatttat---ttttttattattattattattattttgagacagagtctcactctgtcgcccaggctggagtgcagcagcacg-atctcggctcactgcaagctctgcctcccacgttcacaccattctcctgcctcagcc-tcccaagtagctgggactacaggcacccgccaccacgcccagctaatttttttggtatttttagtagagatgggttttcactgtgttagccaggatggtctcaatctcctgacctcgtgatccgcctaccttggcctcccaaagtg--ctgggattacaggcgtgagccaccgcacccagccccaagctaattttatgaggctagcatcaccctaataacacagtcagacaaagacaccacaagaaatgaaaactacagggcaatatctctgatgaacatagatgcaaaaaaaattcccaataagatactagtaaactgaactcaacaacacattaaaa-ggattatacattatgaccaagtggaatttatccctggaatgcaagaatggttcaacatacataaatcaatgtgatatactacattaacagaatgaaagggaaaatctatataatcatctaaatagacatagaaaaagcatctgacaaagtttaacatccattcatgattaaaactctcaacaaaatagctatagaagaaacttacctcaacacagtaaaagcccataactaatatcataa-tcaataggaaaaaaactgaaagccttactatacgatctggtgcgagtaaagaatgcccactcccatcatttctattcaacgtagtacaggaagttctagccagtgctattagacaagaaaaagaaataaaagcatccaaatcagaaagaagtaaatttttttctatttgcagatggcataatgatatacgtagaaaacgctaaaaactcaacaaccaaaaaactgctttaaaaaattctgtaaaattacagaatacaaagtcaacatacaaagatcaattgtgtttctatacacaacaattaagtatgtgaaaaggaaattaagaaagtaatcccattcaaaatagcaacaaaaaaagacttatgaataaacttaaagaggttgaggacttgtacagtgaaaattataaaacattgatgcaggaaattaa-agaaaataaacataaatgaaaggacatcctgtgttcatggattggaataattaatatagttaaaatgtgcataccacctaccacccaaagtgatccacaaattcagtgcaatccctatcaaaatcccgatggcattctttacaaaaacagaaaaaataatcccaaaatttgtatggaatcacaaaagatcctgaatagccaaagcaattttgaacaagaacaaagctggaggcattaaacttcttgatttcaaatatcacaaagctacagtaatcaaaatattatggtactgatataaaacagatatatagaccaatcgaacaaaatagagagcccagaaataaattcattcatttataatcaacagatcttcaacaagggtgccaaaaacacacaatggagaaa-ggctaatccctttaataactggtgtttaaaaaaactgaagattcacatacaggagaataaaactggactctcccctcactccatacacaaaaatcaacttaaaatggattaaagacatacatgtaagacccaaagccataaaactactagaagaaaacataggg-aaaaaacttcttaacattggtctggccaatga-ttttttggatatgacaccaa-aagcataggcaataattctaaaaataagtgagattgcatcaaactaaaaagcttctgcataacaaaggaaacaataaagccagggtgaaaaggaaagctatagaatgggaggaatatttgcaaatcatatatctaacaagaagttaatatccaaaatatataaggaactcaaacaacttaatagtaaagagacaaataacccaagtttaaaatgggctaagtacttgaatgacatttctc-aaaagaagtcatacaaatggccaataggtacatgaaaaggtggtcattattaactatcagggaaatgcaaagcaaaaccacagttagatatcccctcacacttgttaggatggctattatcaaaaagacaaaagataacaagtgtgggcaaggatgcgaagaaaaggaaaaccttgtatattgttggtagaaatgtatgttggtacagccattagggaaaacagtatggagtccttaaaaattaaaaatagaactaccatatgatccagcaagactacttctaggtatatattcaaagaaaatgaaatcagtttctcaaagagacaactgcagccccatgtttattgcagcattattcacaattgccaagatatggaaatgggaaacaacttaagtgtccatcagtaaatgaatggttaaaaaagacgttacatacataatagaaaactattcagcctttaaaaagaagaaaatcctgccatttgcaacaacacaaatgaacctggaggactgatatgatttggatctgtgtccccacccaaatctcatgtctaattctaatccccaatgttggaggaggggcctggtgggaagtgattggattatgggggaggtttctcatgttttaacaccatct-cccttggtgctgttgtgctgataatgagttctcatgagatctggttgtttaaaaa-tgtgtggcaccttcccc-tctctcttcctcttgctctggccatgtaaagtgctagctccccctgcaccttccaccatgattataagtttcctgaggcctccccagaagcagatgccaccatgcttcctgtacaacctgcagaactgtgaaccaattaaacctcttttttttaatgagttacccagtctcaggaatttctttatggcaatgtaagaacggactagtacaaggacattatgttaagtgaaataagccagacacagaatg-acaaataccgcattatctcacttatatgtggaatctaaaaatgtcaaactcataaaaacaaataatagaatgatggctgccattgctgaagggtgggaggaaatgaggaggtgttggccaaaggacataaaggtctggttatgtgggataaataagttccagaaatctaatgtacattatggtgactatagttaataatagttgaaatttgcctagagggtagatttttaagtatcttcaccacaacaaaaaatactacaactatgtgaagtgataggcatgttaatttgcttgattgcagtaaccatttcacaatgtgtatatatatacaaaatcatcatgttttacaccttaaatatatacaatttttatttgtcaagtatacctccataaagctagaggaaAGTATTTTAAGAAAGCATGCTGTCATTTTCTTGTGAATTTAATGATCTCTCTCACTTCACTTTTTTATTGTTAATGTCATATGGGCTTATTATAGGGAAAAAAAGTATAAAGTCTAGataaagtaaaaagtacaacagacaaagctaatatataaattaaaatggaacactaaaacaaacaaagttaaccacaaagaaggccaagaaggaggtacaaatgcacgagaaacagaggacacaaacaggaaacaaataggaaaatgatagatcaattctagccatatcaataagtacgcaaaataccaatggactaaacctttcagttaaaaggtggaggttatcagCTACAAATATAGATCGAGCACTTTTTAAAAGGCTTAAAATGagcctgagcaacatagagagacct-tgtctctacaaaaaattaaattagcctgacatagtggtgcactcctgtagtctcagctactcaggaggctgagctgggaggatcgctcaagcccaagagttcaaggttgcagt-gagctgtgatcacaccactccactctggcctgagcaacaaagtcggaccctgtctctgaaaagcaaaaGGCTTAAAAACGataccatgctaacaataagcataagaaggctagatgggttacattaatgaaaataaattagacttgaa-gacaatggatattaacagaaataaagagtaacatcacataatattaaaagatttaatttttaggaaaatatataattcgcaagcataaagggcctaagagaagaacttcacaatacataaggaaaaagccaaaagaattaaagggagaaatctat-aattatagttggaaattctaacacccctcccttgacaactgatagaacaagtcaagag-aaagtct-gaataacatcattaactactttgtcctaatagccatttatagaacactaaattcaacaactgccaaatactcattcttttc-aagtttacatgatatattcaccaagatagatcatgtgctgggccatttttttaaaagtcttcatacatttcaaaagattgaaacttgctgaatatgttttctgaccacatggaactaaattaaaaattgatgacaataagatacgtgggaaaatcccccaaatatttggaaattaa-----atatttctaaatattctataggtcaaagtagaaatcacaaagcacatttt-aaaatatttcaaaatgaacagtaatgaagaaacaaatatcaaaatttgtgaactatagctaaaataaagcttagagaaaatttgtagctttaatatgcttatattaaaaaagacgttctcaaattaatgaactaagcttctaccttacaaaactttttcttaaaaagtaattaaaaggaaataatacaaataatagcagaaattgagtaaatggaaaacagacaaaaagaaaattaacaaagctaaaagatggtt-ctttgaaaagatcaataaaaaaagagaaaacacaagacagagagatctctagaaatcctacatatattaaaaggttaataatggaatattaggaacaactttatgccaatacattcaactatttagatgaga-tggacatatttctgaaaacacaacttaccaaaattgacacaagataaaatagaacatttgagtagagattgaatacatcatcaaaaactttcccatgaaaaaatttcaggtccaggtggttttactggtgaattctatcaaaacattcaaagaagaaataattctactggaacttttgcagaaaa-taaagaaagtaaaatcttcccagtatgctttatgaggcca-acataactatgatatcaaaaactgataaagacattacaaagaaaagcacagactgacataactcatgaatatagaaacaaaaattctctacaaaatactagcaaaataaaattggcagtaacattgttgaattttatctcagcaatgcaaggtcttttgtattaaaaaatcctaaagaatctat-aacataactagaactaagcagtgtatttatcaagatcataatatacgtaatcaatacttaaagatcaattgtatttttatgtttagagataaaaataataaataacat-tttttaaatccacttgcaatgatgccacaaataataaattttaaaataggtttaataacatgttaatgaagtgtatgttgg-aaattaaatatctcaggaagaaattaaaagcatctctggg-cgaaagtaaagaagacctaaacaaatgaagacatatatcatgattatgtaagcagagaattccatattgctatgacgtcatttt-cttcc-actcattatagaaattcaatgcaactgtaatcggaatcccaacaggctcctttgtagaaatt-gacaagctggttctaaaatttttatggaaatgtggaaggctcagaaaatggca-actttattcttccaattgttcagaaaaacaaaacacctgtagttatcctcacctcctctcttcctttcaggcttcgtgtgtcatctagcagtaaacttgtgctgactctgcc-ttcacaatatactcagagtctaatcacttctcaccaattctgccaccactgctcagactcaagctgcccttaccactcacctgggccatcgtgaagcccccgaacggtctcccgacatccacaccccgcc-tttcacttattcttctttcgctcattcttaggtcagttcatgtccctcctctgctcagaaccccaaaaccttgcgtgcaatgtccagcaagtgcacctgt-gtggtgtgccccacccctcagtcccaccctcctcctcctgactagccccccgccagaaacaccg-cctctttatgcgccacc-aaatgccaagcacactttggccacggagaccttgcagttctggtggcccctacctggaataatcctcctcaga-taccctcatgcctcttccccacccttcaagatgatgctgaatgtcaccttctcagcgaggcttgcctgaggacccccttaa-gacctc-ataccttcCAGCTGCCCCTTCT a score=17599.0 s hg17.chr17_random 1552234 226 + 2618010 ctccatcccctgcttCCAGCCCTACACTTGCCACTGNGGTCTGCCAACTTCCCAGTCCAGCCCAGGGAGCCCAGGCCT-GGCATCACCCAANCTGCCCAGCC--CATCCCTGGCATCATCCAGTTCACCNGTCTTTCCCTTAAACACTTGCTGCCTGGACCGCAGCGGNCCTCCTTCACTTAAGGCACAGGGCTGCCTGGCCAGGGCAGAAGGAGTGAAGCGGGGTTAG------ s panTro1.chr19 78916871 193 + 82489036 CTCCATCCCCTGCTTCCAGCCCTACACTTGCCACTG-GGTCTGCCAACTTCCCAGTCCAGCCCAGGAAGCCCAGGCCT-GGCATCAC--------------------------------CCAGTTCACCA-TCTTTCCCTTAAACACTTGCTGCCTGGACCGCAGCGG-CCTCCTTCACTTAAGGCACAGGGCTGCCTGGCCAGGGCAGAAGGAATGAAGCGGGGGTAG------ s canFam1.chr18 28811887 187 + 66173745 CTCCCCACCCTGCTTGGCTCTCTGGTGCTGCCCCT--GCTCTTCTTACTTCTT-----------GGGGTCCCGGGCATGGGCATTTT-------GCTTTCCCTGCACGCCCAACATCATCCAGCTC--------------------------GCTTGGACCACAGGGA-CCTCCTTCACAAAGGACGCAATGTCACCTGGCCAGGAGTGAAGGGAGGCA-CGGTGGCAGCAGCAA a score=59755.0 s hg17.chr17_random 1552460 523 + 2618010 CCTGCAATGAGCCCTCAC------------CTGACAGAA--GAGGAGCCCTCACCTGGCAGGCAGATGGGGTAAAGTAGNAGGGAACCTTGAGACACCCCCNATGGAGGGGCCCAGAAC--CAAC------CTGTGAAG-----------TTTGTCAGGACTCAAAAGGA---ATCTGCAATAA-----------------TTCGACA--TCCTTGATTTAGATGGATGCTCNCTGCACCTC-----CCGCAAAAACTGTTTCCTCTCTTTACATCCACCTC-------------TCTCCCCACTCTCTCCCTTGCACTAAGATCCACATCTTCTCTTGGTCTCCTGGCCTCTCCCCCTCCACCCTTTCACAGTTAGTGGGCTTCGNGGATCTTGTATCTCANCCCCCAACCCCCAGCC---ACTCCCT-TCCCCAGAAAGACACCGTGATCTGTCATGCATGTGCCCAAAATGTACAATTGATTTTTTTCTTAGGNAAACTCAC-CTTCCATCCCTTGTCACACACACTGAGACCCAGGGTATTCTTGCAGAACAAGTTTGCAATGTCCCAGGTATTGTTCAGAAACAGATGGTACAATG s panTro1.chr19 78917064 517 + 82489036 CCTGCAATGAGCCCTCAC------------CTGACAGAA--GAGGAGCCCTCACCTGGCAGGCAGATGGGGTAAAGTAG-AGGGAACCTTGAGACACCCCC-ATGGAGGGGCCCAGAAC--CAAC------CTGTGAAG-----------TTTGTCAGGGCTCAAAAGGA---ATCTGCAATAA-----------------TTCGACA--TCCTTGATTTAGATGGATGCTC-CTGCACCTC-----CCGCAAAAACTATTTCCTCTCTTTACATCCACCTC-------------TCTCCCCACTCTCTCCCTTGCACTAAGATCCACATCTTCTCTTGGTCTCCTGGCCTCTCCCCCTCCACCCTTTCACAGCTAGTGGGCTTCG-GGATCTCGTATCTCA-CCCCCAACCCCCAGCC---ACTCCCT-TCCCCAGAAAGACACCGTGATCTGTCATGCATGTGCCCAAAATGCACAATTGATTTTTTTCTTAGG-AAACTCAC-CTTCCATCCCTTGTCACACACACTGAGACCCAGGGTATTCTTGCAGAACAAGTTTGCAATGTCCCAGGTATTGTTCAGAAACAGACGGTACAATG s mm5.chr11 118607486 515 + 121648857 CCTGCAAGGATGCCTCAC------------TTGACAGCACCAAGGGGGTCACATCTGCT----------------GTGGGATGAGACTTGGAGCCTGGTCC-----AGAGACTCAGCAT--CAGCCTTCAGCTGAGAAGAGAGGAAGCCCTGTGTCCAGACACCAAGAGATGCACCTGCCAGAG-----------------CTCAAAGGCTCCACAATATAGC---ATCCTC----CATCCCTACAGTTATGAAAAGCACTTTATCTTTTTACCTCTGCCTCAGGCCACCCAGGATCCTCCAGCCTACCTCCTGGTTCT----CTCTCATCTCCATTT------CCGTCCTCTCCCTCTAGTCCCCTCTGCCCTTA-----CTTGG-GAGCTAAGCATCTGT-CTCCCACCTGCCAACCTAGACACTCT-CCTGTGGAAAGGAGCCTCAGCCTGTCTCTCATGAACCC-ACATACAGAATTGACTCAACTCT---G-ACCCCCGCACTCCTGTCTTCTGTCACATGTACAGAAAGCTGGGATGCACTT---GAACTCATTTGC-ATGTCCCCGGTATTGCTCAGAAATCAATGGCTCCATG s canFam1.chr18 28812074 482 + 66173745 CTGGAATTGAGCTCTGGCAACAGAGCCTTGCTAACTGGG--GAGGGGTCCCCACTGG---GGCAGATGGG--CAAGACGGAGGGAGCAGCAAGATGCCCCA----GCACAGCCCAGAACGGCAAC------AAGCAAGG-----------GCAGACGTGAGCCATAGTCT---GTGTGCAGTGGCGGGAGGCCCTGCTATCTTTGACA--TCCCAGACTCAGACTGGTACCC----GCTCCC-----CCAGAGCAAGTGGTTCC---CTCCACATCTGCCCC-------------TTTC-----------------------ATCCAGAG--------------CCGCCCTC----------CCCGTTCCTGCTCAAGCGGCTGGT-GATTTTAGTATCTTTCCTTCCTGCTCCC--CC---ACCTCCTGCCCGTGAAAAGAAACCTCCACCTGGCTCTTTCGTACCCAAAACGCACAACTGATT----TCTTAGA-AAACTCGC-CCTCTGTCTTTTGTCACATACGCTGAG-CCCAGGCTGTACTTGAAAACAGAGTTTGC-ATATGCCAGGTGTTGTGCAGAAACTGATGGCTCACTG a score=7526.0 s hg17.chr17_random 1552983 34 + 2618010 GAAGGTGTTGTCAGAAAACGTGAC-ATGAGAAGTT s panTro1.chr19 78917581 34 + 82489036 GAAGGTGTTGTCAGAAAACGTGAC-ATGAGAAGTT s canFam1.chr18 28812556 35 + 66173745 GAAAGTGTTGTCGGGAAACGTGATGATGAAAAGTT a score=31662.0 s hg17.chr17_random 1553017 400 + 2618010 TNAACCAAAAACTGAAAAAGAAAAATGAGTCCCATtgtattagtctgttctcacactgctaatacagactgggtaattngataaagaaaagaggtttaatgaacnttacagttccacataactgngggaggcctcacagtcatggcagaaggcaaaggagaagcaaacgcatgtcttatgtggtagcaggcaagagagtgtgtgcaggggaactncacacttataaaaccatcagnctgttgtgagacttattcactaccatgagaacaatatgggggaaactgcccccatgatttgattatctccacctggccctgcccttgacatgtggggattattataattcaaggtgagatttgggtgggggcacagcc-aaaccata-tcaCCCATATCACAAANG s panTro1.chr19 78917615 394 + 82489036 T-AACCAAAAACTGAAAAAGAAAAATGAGTCCCATtgtattagtctgttctcacactgctaatacagactgggtaatt-gataaagaaaagaggtttaatgaac-ttacagtt-cacataactg-gggaggccgcacagtcatggcagaaggcaaaggagaagcaaacgcatgtcttatgtggcagcaggcaagagagtgtgtgcaggggaactcc-cacttataaaaccatcag-ctcttgtgagacttattcactaccatgagaacagtatgggggaaactgcccccatgattcgattatctccacctggccctgcccttgacatgtggggattattacaattcaaggtgagatttgggtgggggcacagccaaaaccataccCACCCATATCACAAA-G a score=60429.0 s hg17.chr17_random 1553417 551 + 2618010 ACCAAACCNTGACCTGCCCATTTGCTACCCCCAACCccaatatctctcctgtctggctctgctctgccgccagcaccctgactgtccctctgtcctgccagccaccct-ctgccccatgacctttgcaagtgctgatccatctgcctgacctngcttttccccagatacccacacagttcacttgctggcctcactcaggcctttgcAC-TGCCTGGCCTTAGCAGANGAGGATGGCCCAGTGTACAACTACAGCATCCCCAGCCCAGCAGTGGAGCCAGGGGACAGGGGACAGGCCAACCCCACCTCTCCNTNCCTNTGATTTTATTTCCTCTGTGACATTTTCACTGCC--gtgtgtgtgtgtgtgtgtgtgtgtgtgAtctccttgcactagaatgagtgagaggacttcatctgctcatggctgagctgtagccctgatgcctagagccgtgcccagcCATGNCCCAGCAACAGGGNNCACCTTTNCATAAACAACCATGAACTGAGCAGCCGCTGTCAGCATCACTCCACCGGTG-TCGCCNTGCAGAAAG s panTro1.chr19 78918009 542 + 82489036 ACCAAACc-tgacctgcccatttgctacccccaaccccgacatctctcctgtctggctctgctctgccgccagcaccctggctgtccctctgtcctgccagccaccct-ctgccccatgacctttgcaagtgctgatccatctgcctgacct-gctcttccccaaatacccacacagttcacttgctggcctcactcaggcctttgcac-tgcctggccttagcaga-gaggATGGCCCAGTGTACAACTACAGCATCCCCAGCCCAGCAGTGGAGCCAGGGGACAGGGGACAGGCCAACCCCACCTCTCC--TCCT-TGATTTTATTTCCTCTGTGACATTTTCACTGCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgATCTCCTTGCACTAGAATGAGTGAGAGGACTTCATCTGCTCATGGCTGAGCTATAGCCCTGATACCTAGAGCTGTGCCCAGCCATG-CCCAGCAACAGGG--CACCTTT-CATAAACAACCATGAACTGAGCAGCCGCTGTCAGCATCACTCCGCCGGTG-TTGCC-TGCAGAAAG s canFam1.chr18 28814399 406 + 66173745 ATTAAACC-CAATCTGACCACTTGGTCCC-----CCCTGACATCTCTCACCTGtggctcccctctgc------------------ccctccatcctgccaaacatgttgctgccacagggccttggcacatgcagatccagct-cctggcat-gctctgcccgagg------------tcactcaccggcctcactcaggtctttgcacaagcgctgccttagcaaa-gagAACGGCCTG-----------------------------ACTTGAAC-----------------------------------------TGACTTTGTTTTCAC-------------CTGCA--GGGGGTG-------GGGTGGGGCACTCATCCAcccccactagaatgagagcaaggactt----tgttcatccctgagctatagccccagcaccctgaaccatg-----------tccagcactcagg--cgccttt-agtaaacatgtgtctgatgaatgGCTTTGGTCAGCGTCCCTCTGAGGGTGCCCGGC-TGCAGAGCG a score=18125.0 s hg17.chr17_random 1553968 78 + 2618010 CCTGACACATCCATGGGAATGGCTCCCAGGAACAACACATTCCCCTGAAAATGGGTGAGTTCCTCTCTCCCATAGCCT s panTro1.chr19 78918551 78 + 82489036 CCTGACACATCCATGGGAATGGCTCCCAGGAACAACACATTCCCCTGAAAATGGGTGAGTTCCTCTCTCCCATAGCCT s mm5.chr11 118609697 73 + 121648857 CCTGACACTTCCACAGCAATGGCTCT---GAAGAACACAGTCCCT--GACAGGGGCCAGCTTCTCCCTCCAGACACCT s canFam1.chr18 28814805 76 + 66173745 -ACTACACATCCATGGTAAAGGCTCTCA-GGATGATGAATTTCTCTGAAAGCCGACGGCTTTCTCTTCCCCAGAGCTT a score=11867.0 s hg17.chr17_random 1554046 108 + 2618010 CCAGTTGCCCCTTTGACCCTC-CTCTGNCCTCAACGCAGTGCGAGGTCTCTGCACAGGANAAGCAGCAATGAGACCCACAGCACAGCAGCTGCCACTCATGTCAGCAAT s panTro1.chr19 78918629 106 + 82489036 CCAGTTGCCCCTTTGACTCTC-CTCTG-CCTCAACGCAGTGCGAGGTCTCTGCACAGGA-AAGCAGCAACGAGACCCACAGCACAGCAGCTGCCACTCATGTCAGCGAT s canFam1.chr18 28814881 95 + 66173745 CCCGGTGCTC---TGCCCCTCTCCCTG-CCTCCACGCAGCCCGTG---TCTGTA-ACGA-AAGCAG--GCCAAGCCGACA--ACAGTCACCACCGCTC-TGTCAGTGAT a score=51117.0 s hg17.chr17_random 1554154 232 + 2618010 GCCTCCAGCTAATTCATGCAACTGCCGGGGAGGATGCCTTAATACCTCTGCACAAGACAGAGTAATTACGTCTAAACATAGCTGCTTCC----ACACTGTCTCCATT---TCCCGGCACTGGGAAATCTCTGGCCCAGAGTCAGCTCTCTGCCATCTCCCCCAGCCCCGGGAGCCTGGGGCCAT-CCCACAT-CTGTGGGAGCACCAGAGAAGCACATGCCACACAGAGCACCCCAGCCCA s panTro1.chr19 78918735 232 + 82489036 GCCTCCAGCTAATTCATGCAACTGCCGGGGAGGATGCCTTAATACCTCTGCACAAGACAGAGTAATTACATCTAAACATAGCTGCTTCC----ACACTGTCTCCATT---TCCCGGCACTGGGAAATCTCTGGCCCAGAGTCAGCTCTCTGCCACCTCCCCCAGCCCCAGGAGCCTGGGGCCAT-CCCATAT-CTGTGGGAGCACCAGAGAAGTACATGCCACACAGAGCACCCCAGCCCA s mm5.chr11 118610540 196 + 121648857 GTCTCTAGGTAATGCA-ACACCTGCCAGGAAGGATGCC-GAATACCTCCGCACAG---ACAGTCATTATCTCTAAACATAGCTGCTTCC---TACACCA-------------CCGTCATCAGA-------TGGGCCA-AGTCAGCTCTCTGCCACCTCCC-------------CACAGGGTCA--CACATATCCTGAAGGGATACTGAATGAACATAAGCCAT-TAGAACACTCTAGCCCA s canFam1.chr18 28814976 222 + 66173745 GCCTTGAGCTAATTCCTGCAACTGCCAGGGAGGATGCCTTAATACCTCTGCACAAAACAGAGTAATTATTTCTAAACATAGCCGCCTCTCCCCACGCTGTCACTGTTAGATGCCGGTA-------------AGCCTGCAGCCAG-----TACCGTGACTCCCAGCCTTGGGATCTCCGGGTCCTGAAAACATCCCCTGAGGGCACCAAATGGGCACAAGCCATGCAGACCACTC-AGCCGA a score=19608.0 s hg17.chr17_random 1554386 162 + 2618010 CAGGCCCTGCTGCCCCTAACTGCACAAGGTCA--------TGGCACAGCGCATGACCAGGGNCCTTGTGGNCTCAGGGCTTCGATCCACCTGACCCCTGCCTCCTCCCCAACCTTCCACCCCACTCTCCANATGGCCCGGGTCACCCTGCCCCANCCCCCAACTCACACC s panTro1.chr19 78918967 158 + 82489036 CAGGCCCTGCTGCCCCTAACTGCACACGGTCA--------TGGCACAGCGCATGACCAGGG-CCTTGTGG-CTCAGGGCTTCGATCCACCTGACCCCTGCCTCCTCCCCAACCTTCCACCCCACTCTCCA-ATGGCCTGGGTCACCCTGCCCCA-CCCCCAACTCACACC s canFam1.chr18 28815198 129 + 66173745 CCAGCCCTGCCTCCCC-AACTGAACTGGGCTGCCAGTAGCTGGCGCA------GACCAGGG-CCTGGTGCTCTCTGGGGTTCA-------------------------------CCCACCCCACTCACTT-GTCACCTGGGCCACCCTGCCCCA-CCCCCAACTCCTGCC a score=1707.0 s hg17.chr17_random 1554548 23 + 2618010 TGNTCTCCCACCTCCAGGGCCAG s panTro1.chr19 78919125 22 + 82489036 TG-TCTCCCACCTCCAGGGCCAG a score=-307.0 s hg17.chr17_random 1554571 14 + 2618010 TGCTGTGGTGGACA s panTro1.chr19 78919147 4 + 82489036 TGCT---------- s rn3.chr8 31884281 14 + 129061546 TGCTGTAGTAACAC a score=9385.0 s hg17.chr17_random 1554585 238 + 2618010 CAGAGCCCACC-------TGGGGGTGGAGTGGTAGAGACAGAGCCCACCTGGGGGTGCAGTGGTGGACACAGAGC-----------CCACCTGGGGGTGCAGTGGTGGACACA-GAGC-----------CCACCTGGGGGTGCAGTGGTGGACACA-GAGC-----------CCACCTGGGGGTGCAGTAGGAGACACAG------------AGCCTCCTGGGGGTCCAGCAGGGGACAC-GGAGC-----------CCATCTCAGGGTGCAGTGGTGGATGCA-GAGCT--GGTCTGGGGGTGCAG s panTro1.chr19 78919151 155 + 82489036 -----------------------------------------------------------------------------------------------------GTGGTGGACACA-GAGC-----------CCACCTGGGGGTGCAGTGGTGGACACA-GAGC-----------CCACCTGGGGGTGCAGTAGGAGACACAG------------AGCCTCCTGGGGGTCCAGCAGGGGACAC-AGAGC-----------CCATCTCAGGGTGCAGTGGTGGATGCA-GAGCT--GGTCTGGGGGTGCAG s rn3.chr8 31884295 239 + 129061546 AGGAGACCAGT-------GAGGGGTGCTGTAGTAACACAGGAGACCAGTGAGGGGTGCTGTAGTAACACAGGAGA-----------CCAGTGAGGGGTGCTGTAGT-AACACAGGAGA-----------CCAGTGAGGGATGCTGTAGT-AATACAGGAGA-----------CCAGTGAGGGGTGCTGTAGTA-ACACAG----------GAGACCAGTGAGGGGTGCTGTA-GTAACACAGGAGA-----------CCAGTGAGGGGTGCTGTAGT-AATACAGGAGAC--CAGTGAGGGGTGCTG s fr1.chrUn 72346555 301 - 349519338 CACAGCCCGACCATCCGGTGGAGGGGTTGGATTAAAACGCTCCTCCAGCTGGGGGGGCGACAGTAGACCCAGGTCCCCCAGCTCCTCCAGCTGGGGGGGCGACAGTAGACCCA-GCTCCTACAGGTCCTCCAGCTGGGGGGGCGACAGTAGACCCA-GGTCCCCCAGCTCCTCCAGCTGGGGGGGCGACAGTAGACCCAGCTCCTACAGGTCCTCCAGCTGGGGGGGCGACAGTAGACCC-AGGTCCCCCAGCTCCTCCAGCTGGGGGGGCGACAGTAGACCCA-GGTCTTCCAGCTGGGGGTGA-- a score=3334.0 s hg17.chr17_random 1554606 26 + 2618010 GTGGTAGAGACAGAGC------CCACCTGGGG s panTro1.chr19 78919151 26 + 82489036 GTGGTGGACACAGAGC------CCACCTGGGG s rn3.chr8 31884316 26 + 129061546 GTAGTAACACAGGAGA------CCAGTGAGGG s fr1.chrUn 72346577 32 - 349519338 GGGGTTGGATTAAAACGCTCCTCCAGCTGGGG a score=6302.0 s hg17.chr17_random 1554632 36 + 2618010 GTGCAGTGGTGGACACA-GAGC-----------CCACCTGGGGGTGCA s panTro1.chr19 78919146 36 + 82489036 GTGCTGTGGTGGACACA-GAGC-----------CCACCTGGGGGTGCA s rn3.chr8 31884342 36 + 129061546 GTGCTGTAGT-AACACAGGAGA-----------CCAGTGAGGGGTGCT s fr1.chrUn 72346609 47 - 349519338 GGGCGACAGTAGACCCA-GGTCCCCCAGCTCCTCCAGCTGGGGGGGCG a score=-31.0 s hg17.chr17_random 1554823 1 + 2618010 T s fr1.chrUn 72346856 1 - 349519338 C a score=91.0 s hg17.chr17_random 1554823 1 + 2618010 T s rn3.chr8 31884534 1 + 129061546 T a score=1692.0 s hg17.chr17_random 1554824 3 + 2618010 AGT s panTro1.chr19 78919307 3 + 82489036 AGT s rn3.chr8 31884535 3 + 129061546 AGT s fr1.chrUn 72346857 3 - 349519338 AGT a score=13319.0 s hg17.chr17_random 1554827 164 + 2618010 GGGCACTGCT-----------------------------------------------AGTCCCTCC-------GAAGCAACAGTTCTCAGAGTTGGGAGCATCAGGCATGGT-------CAGACAGTGTGAGACGAACTGGATGGGCCT--------------ATGAATGTGGTCAGGGNACACTCAAGATGAGCTCTGCTCATGGCCAGCATGGGACTGGCAAGAGTACCTGCAGGAC s panTro1.chr19 78919310 163 + 82489036 GGACATTGCT-----------------------------------------------AGTCCCTCC-------GAAGCAACAGTTCTCAGAGTTGGGAGCATCAGGCATGGT-------CAGACAGTGTGAGACGAACTGGATGGGCCT--------------ATGAATGTGGTCAGGG-ACACTCAAGATGAGCTCTGCTCATGGCCAGCATGGGACTGGCAAGAGTACCTGCAGGAC s fr1.chrUn 72346860 207 - 349519338 AGACCCTGCTCCTCCAGGTCCTCCAGCTGGGGGGGCAACAGTAGACCCAGGTCCCCCAGCTCCTCCAGCTGGGGGGGCGACAGT----AGACCCAGCTCCCCCAGGCTGGACGTCCCTGCATACAGTATGA----AACCAGACGTTCCTGTCGCCTGTGCTGCATAGAAATGATCAGAGGACC------ATGGAAGCTGCTCA------------------CAAGAGGACCTACAAGAC a score=17767.0 s hg17.chr17_random 1554991 194 + 2618010 AGGGAGCGGTGCAGATGACGTGGGTAATGGAGACCTAGAGCTTAGCTTAGGCTGCACAGTCAGGACCTAACTCACGGGCACGTCCTCCCCAGAGGCAGGTCACCCAAGAACTGGGCCGCTGAGGTATGAAACAGATGCCNTGGGTTTGCATCCTGCTCTCCAGTTACCAAGCTCTCCAGACCCCTGCAATAGCA s panTro1.chr19 78919473 193 + 82489036 AGGGAGGGGTGCAGATGATGTGGGTAATGGAGACCTAGAGCTTAGCTTAGGCTGCACAGTCAGGACCTAACTCACGGGCACGTCCTCCCCAGAGGCAGGTCACCCAAGAACTGGGCCGCTGAGGTATGAAACAGATGCC-TGGGTTTGCATCCTGCTCTCCAGTTACCAAGCTCTCCAGACCCCTGCAATAGCA a score=57703.0 s hg17.chr17_random 1555354 658 + 2618010 GGGGGTATGGCAGTACTTCCTGGTATTAGGGTCCAAGGACANCCCCTCAGAGCCATGGCCAGGTATGGAAGCGGTTACATAACTCCGGCAGGGGNCTGGGGCTGCTCTCCAAATGTCCCCACGCCATCAAGGtttcccagcctcccttgcanggatgctggatccctgtggccagtgggttgcgggcagaaatgatacaagccgtttcacacctggcccttaaaacccccTTGCTCCAGCCTCTCCCACCCACACCNTATGCCCCACCACAGCCACCTGTGGTGTTACATTCCAGATGCCATGGCCACAGGATAAGGAAGACAGCTCAATCAGCTTAGCATGAGTGAAAAATGTCttttttttttttttttt--gaaancantagtctcactctgtaacccaggctggagtgcagagctacaattgcagctcactgcagcctccactttatngggttcaagtgatcctcctgcctcagcctcccaagtagctgggactacaggcacacaccaccatgcctggctaattatttttattttttggtggagatggggtcttgatgattgcccaggctggtctcaaactcttagcctcaagtgatcctcccaccttggcttcccaaagtgctgggattacaggtgtgagccaccatgaccagct s panTro1.chr19 78920090 653 + 82489036 GGGGGCATGGCAGTACTTCCTGGTATTAGGGTCCAAGGACAACCT-TCAGAGCCATGGCCAGGTATGGAAGCGGTTACATAACTCCGGCAGGGG-CTGGGGCTGCTCTCCAAATGTCCCCACGCCATCAAGGtttcccagcctcccttgca-ggatgctggatccctgtggccagtgggttgtgggcagaaatgatacaagccgtttcacacctggcccttaaaaccctcctgctccagcctctcccACCCACACC-TATGCCCCACCACAGCCACCTGTGGTGTTACATTCCAGATGCCATGGCCACAGGATAAGGAAGACAGCTCAATCAGCTTAGCATGAGTGAAAAATGCCtttttttttttttttttttgaaac--atagtctcactctgtaacccaggctggagtgcagagctacaattgcagctcactgcagcctccactttat-gggttcaagtgatcctcctgcctcagcctcccaagtagctgggactacaggcacacaccaccatgcctggctaattagttttattttttggtggagatggggtcttgatgattgcccaggctggtctcaaactcttagcctcaagtgatcctcccaccttggcttcccaaagtgctgggattacaggtgtgagccaccatgaccagct a score=10345.0 s hg17.chr17_random 1556012 92 + 2618010 GagaaataaacatctactgggacaagccagtgagatgcctgggcttgtttgttagcacagaagaacctggtttatcctgactCACCCAACAA s panTro1.chr19 78920743 92 + 82489036 GagaaataaacctctactgggacaagccagtgagatgcctgggcttgtttgttagcacagaagaacctggtttatcctgactCACCCAACAA s canFam1.chr18 28818088 69 + 66173745 GAGGAACGAGCCTTGATTGGGATACACC-GTGGGCTGAGCGGGCTGAC----------------------TCTGTGTTGACTAATCCGGCAG a score=66404.0 s hg17.chr17_random 1556104 755 + 2618010 CTTTGAATGCACCTACattagtctgttcttgcactgctataaagaaatacttggccaggtgtagtggttcacacccataattccagaactttgggaggccgaggcgnagtggatcacctgaggtcaggagttcaagaccagcctggccaatgtggtgaaacncccgtctctactaaaaatacaaaaanctagccnaggcatgatggcggaggcctgtaatcccagctactggggaggctgacgcaggagaatcacttgaacctgggaggcggaggttgcangtgggcggagatagcgccattgcacttcagccgacagagcaacactccacctcaaaaaagaaaaaaagnaaatacttgaaactgggtaattttttaagaggtttaattggctcaaggttctgcaggcntgtacaggaagcatgatgctggcatctgcttggcttctggggaggcctcaggaaacttancagtcatggaggcaggcgaaggggaagcaaggtatcttccatggtggagcaggaacaagcagggagggaggcgctacccactttaaacaatcagatctcacagtaactcactcactatcaggaagacagtaccaaagggtgggtgctaacccattcatgagaaaccggccccctgatccaatcacgtcccaccaggccccacctccaacattggggattacatttcaacatgagatttgagcagagacacagatccaaaccatatcaGTGCCTGTGCAAGGACCTC s panTro1.chr19 78920835 747 + 82489036 CTTTGAATGCGCCTACattagtctgttcttacactgctataaagaaatacttggccaggtgtagtggttcacacctataattccagaactttgggaggccgaggcg-agtggatcgcctgaggtcaggagttcaagattagcctggccaatgtggtgaaac-cccgtctctactaaaaatacaaaaa-ctagcc-aggcatgatggcggaggcctgtaatcccagctactggggaggctgacgcaggagaatcacttgaacctgggaggcagaggttgca-gtgggccgagatagcgccactgcacttcagccgacagagcaacactccacctcaaaaaagaaaaaaag-aaatacttgaaactgggtaattttttaagaggtttaattggctcaaggttctgcaggc-tgtacaggaagcatgatgctggcatctgcttggcttctggggaggcctcaggaaactta-cagtcatggaggcaggcaaaggggaagcaaggtatcttccatggtggagcaggaacaagcagggagggaggcgctacccactttaaacaatcagatctcacagtaactcactcactatcaggaagacagtaccaaagggtgggtgctaacccattcatgagaaactggccccctgatccaatcacgtcccaccaggccccacctccaacattggggattacatttcaacatgagatttgagcagagacacagatccaaaccatatcaGTGCCTGTGCAAGGACCTC a score=32749.0 s hg17.chr17_random 1556859 279 + 2618010 TCATCATAAAAACAATGTTTCTAGGGAAAGCTTTGCTGGAAATTCCCAACAACTGATGGTGAATCATCCCCAACTAAACTGGGGGGATTCGATTTTTCCACTCCTTTCTCTCTCTAATCACC----CAAAACAGATAAGAAGCAGAAACAGAATGAATTAGAGAGTAATGCTGGATGCCCGGGCCGAGGGAGAAGGGCAGAGCTAGGGACCTGTGGGGTGGGCCAGGGACGGGGCTGCTGATGGCAAGCAAG----TTGATTTGCCCTAAGGAACCT-CCAAAACTCA s panTro1.chr19 78921582 279 + 82489036 TCATCATAAAAACAATGTTTCTAGGGAAAGATTTGCTGGAAGTTCCCAACAACTGATGGTGAATTATCCCCAACTAAATTGGGGGGATTCGATTTTTCCACTCCTTTCTCTCTCTAATCACC----CAAAACAGATAAGAAGCAGAAACAGAATGAATTAGAGAGTAATGCTGGATGCCCGGGCCGAGGGAGAAGGGCAGAGCTAGGGACCTGTGGGGTGGGCCAGGGACGGGGCTGCTGATGGCAAGCAAG----TTGATTTGCCCTAAGGAACCT-CCAGAACTCA s canFam1.chr18 28818346 244 + 66173745 TCTTACTGAAAACAACTTTTCTACGGGAAACTCCACCGCAAGTTTCCAAAGACCG-----GAA--ACTGCGGTTTGAAACGGGCGAATGAGACCTCTCTGATCCATTCCGTCAACAATCTCCTAAACAAAGAGGTGGAGAAGCAGAAACACACCGGA-----------------------------GGAGAGATGGG--------GAGGCCGATGGGGTGGGCGGGTGACCTGGCAACGGACAGGGACAAAGTTCTTTGCTGTCCCCCAAAGAACTTACCCAGAATCA a score=3309.0 s hg17.chr17_random 1557138 271 + 2618010 GGGAAAGCAGAGGCCCTGGGTACTTTAAAGGCCCAGGGGAGGCCAAGGCACTG-GGGGTTCTCATAAGGATTCTGCACCCTGCCAGCCTCATTGCAGCCACGCCGCTCTCCCACCC---------ACTGAGGCGCATTTCCACTAGGACGTGAACCAGAGAGACCTGGGGCTCAGGGATGCCAGGCTCACAGAGCA-GGGGACAAGCACAGTACTGA----AGGACTATTAAACAGAAGTCT------------------CCGGCCCCTCCACTGCCCACCCCAGAAC-CCAGG-----------------ACCCACCCCAG s canFam1.chr18 28818590 305 + 66173745 TGGAAA---------TTGAGTACTCTGAAGGCTGAAGTGAGGCACAGATGCTGCAAGGTCCAAAGGAGGCATGTGGACCCTGCCCACCC--TCCAAAGGATGAGGTGcccccgccctggggttgacctgaggctcattcttg--ggggcctggaccagagacgccc-agactccaggacatc-tgctcacagagggtggggtcgggcccagtgctgaacagaggaggactgaacaggagtgtccacactcttggggccagccagcccctc--ctgccagctccagaacaccagaagccagacctaaatgccacccatcagca a score=111769.0 s hg17.chr17_random 1557409 784 + 2618010 GCAGATCAGAGGATGCACTTCTGGAGAGACT-AAAGCTCCC-CAGAGAACAGACCTATAAATACACCGACACTTAGGAGTCACAGTAGAAAGGCAGCTGTCCACCCATGGCCCCCGANGGGAAGACTGCCATCGACGTCAGCGCCCAC---------CAGTCCCCGGCATCTCCAAG--CGCCCTGCAGGCTCC--AGGGTGgcaccagcatctccatgcctgaagcttctcctaaaacctcagaagatggctctgcc-tctcgtgg-gggtgacagggtcctggcctttaccctcggcctctccaagagccctgcacctgggactcgcctgaggtggggcataaacaccccagctccaccagcgccatccaggcaggggattcc--aggtgtgtgttctgcactgttcctcagaggtccctgcagggttgagttnccaaacacacgcactgcaggattgagtcaccaagtcgccggtttggtgatgcaccccttcttggcggccttcccttccagggtccacgtgcccacttcccctaccagggcttcctccacctccccagtaaactgctttcccccaagccttggctcagggttggcttctggaggaac-ctagaTAGAGAGGGTCTGTGAGCTCCTGGCCATCAGCTCG-ATGCTGCAGGTCTTAAACATAAGGGGAAAGACAGACAGCGCCAGAGAGTTGAGAAAAGTCTCCAG--TGGACAACAGCAACCAAAACAACAGACAGGGGAAGATGCGGATCATGTTCtgtgg-tgccaga---ctccaaaatggctgccttctggtg s panTro1.chr19 78921961 782 + 82489036 GCAGATCAGAGGATGCACTTCTGGAGAGACT-AAAGCTCCC-CAGAGAACAGACCTATAAATACACCGACACTTCGGAGTCATAGTAGAAAGGCAGCTGTCCACCCATGGCCCCCGA-GGGAAGACTGCCATCGACGtcagcgcccac---------cagtccccggcatctccaag--cgccctgcaggctcc--agggtggcaccagcatctccatgcctgaagcttctcctaaaacctcagaagatggctctgcc-tctcgtgg-gggtgacatggtcctggcttttaccctcggcctctccaagagccctgcacccgggacttgcctgaggtggggcataaacaccccagctccaccagcgccatccaggcagtgtattcc--aggtgtgcgttctgcactgttcctcagaggtccctgcagggttgagtt-ccaaacacacgcactgcaggattgagtcaccaagtcgccggtttggtgatgcaccccttcttggcggccttcccttccagggtccacgtgcccacttcccctaccagggcttcctccacctccccagtaaactgctttcccccaagccttggctcagggttggcttctggaggaac-ctagaTAGAGAGGGTCTGTGAGCTCCTGGCCATCAGCTCG-ATGCTGCAGGTCTTAAACATAAGGGGAAAGACAGACAGCACTAGAGAGTTGAGAAAAGTCTCCAG--TGGACAACAGCAACCAAAACAACAGACAGGGGAAGATGCGGATCATGTTCtgtgg-tgccaga---ctccaaaatggctgccttctggtg s canFam1.chr18 28818895 765 + 66173745 agaggtcagaggctccctctccggagagactaaaagctcctgcagagaaaaggcctacaaatatactgacatttggaagtcaaactaaaaagcaagttgtccaccattcaccctgca-ggaaatcccatggccaaTGTCAGTGCTCGCCCAGTGGCTCGGACCTTAGCTGCTGCAGAGTCCTCCAGTAgacttccaacagtggtgcctgcatct-catgcctgcagagtcacccaagacctcagaagactgctctgccttcttgtagcaggtggacgggtcctgacatttaccctc-ccctaccccatagtgttcaatcagtgattcagaaaagtcaaggcatag----cccagctccatca---tcatgcaggtggagtaattctgaggagtgtgttttgcacta-tattcagagttctctgcaggaccaggtt-ccaaacatacaccgtac-----------------tagctggcttcaaaactcatcctttcttgttggccttccctt--gtgttccaca-actcac-taccctactaggatttccttcacctcccagataaactgcttgccctcaaatcctCCATTTGGGAGacagtctacaagttctccatgtaagcacgcacacagagcctc---caatcagcttgcatgcttc-gctcttaaatat-----gatagatatagatcaccagatacttgagataagtcttcaggatgaacaacagaaaccaaaaca----aGTGGGTGAAATTCAGAGCAAGTGCTGTGGTTGCCAGCCTTCTCCAGGTTGGCTGCCTCCTGGTA a score=7471.0 s hg17.chr17_random 1558193 87 + 2618010 gcgacacccccgggccgtcccctcccactgttccaggttggtctctgtaactgatggagtgtggcatgcaatgtgactggtgatatg s panTro1.chr19 78922743 86 + 82489036 gcgac-cccccaggccatcccctcccactgttccaggttggtctctgtgactgatggagtgtggcatgcaatgtgactggtgatatg a score=11150.0 s hg17.chr17_random 1558280 66 + 2618010 gcacttccgagattaagctacagaagatgctgcagcttccatcttggtttgtcctctccctttctc s panTro1.chr19 78922829 66 + 82489036 gcacttccgagattaagctacagaagatgctgcagcttccatcttggtttgtcctctccctttctc s canFam1.chr18 28819697 64 + 66173745 TTacctctgagattaggttataaaaaacact--agtttccatcttagttacccctccacaattccc a score=12351.0 s hg17.chr17_random 1558346 162 + 2618010 cttttctctcttgccccctttCctctctctctctctctctctctctgtctctctctctcctcccccgcctctctccctccctccttccctccccctcccccctccctccctgtctctctttccctccctctctccttctctctctgcctttctctctttctc s panTro1.chr19 78922895 142 + 82489036 cttttctctcttgccccctttCCTctctctctctctctctc--------------------cccctgcctctctccctccctccttccctccccctcccccctccctccctgtctctctttccctccctctctccttctctctctgcctttctctctgtctc a score=2700.0 s hg17.chr17_random 1558673 142 + 2618010 gaggttaattccggaagaaacagctagcagtagaagaataggcagaagtaggaagggggaaagagaatgctggtgtttattataaatttggagcacaatttcaattttaaaactatttgcatg---------tCGTGGTTTTTTTTTTTAA s canFam1.chr18 28821767 111 + 66173745 GAGGTGAATGCCAGCAGAAACAGCTA--------------------------AGGGTAGAAAGGGA--------------TCCAACCTTGGGGTACAATTTGACTTTTAAAACTATTGTCATACACCTTGATTTGTTTATTTTTTTTTTAC a score=38563.0 s hg17.chr17_random 1558941 1249 + 2618010 GTTAATTCAGCTTTTTAAAAACTCATAAAAATAAAATGTTAGGGCACCTGTACTGGAAAGTCTCACCAATTCATACAAGTTGTTTGGTTTGTC------ACCTGAACAGTATGATTTTGAAAGAAATACTGCTCTTTTTTTTTTCATCTCCACAAAGTAGGTTATCTAAAGCAAGC----AGTTTTGCTAAAAGGATAAACAAGGGCATGAAAGAAAGAGGgaattgtggacgtatacagcttgcaaaggccttccagttttctggtccaagccactcattcattgcacagactggtaaatcgagcaccggagaggctgtgtttaccccaagatGGGTGGGTAACAACCAGCACAGCCAG--TCTCTGACCAGCTTTCGGACTCTCC--------------------------AGCCCCTGAGCCCCTCTAGACTACCCTCCAAAGAATTTTTTCACAGTGGGAAGACTCTTCTAGGGCAGGTGGCCTGGCACTGAGGTCAGGGAGCAGGGAAAGGGAAGACACT-GGAAAATGAGTTCCAGACACACCTA-AGCAAATGAAAGAAGCATTAGAAAAGGTTACCTTGGCTGGGGCATGTCTAAAAGACTC-AGCCCATGTTCCTGATCCTTTTCTGAAGACATTGAAAACTCTACAGATCNA-----AAAGTCTACGGCCCAGCTGGAGAATTCAAATAGACATGGGCA---CCAACCACCCCCAGGTACAAGCCCCTCGGTGTAAGGGAAGGAGTCCCTATTA----AGgagctctaactttaacaaaatgacctgatttccnaacaaaaagaactggacttacccaggtagcagaattttgtcnttcanaatcgttttagcaccttgcaggggagggcccncttttt----taaaatgctatctcatttggaacatctgggaattccactttgagaggtggccttcagagccaacgtaaaatccnacaangagaaaatgggtctcatcgctttatgggc----------ctctccctctctctgaagcaacattatgcaaatgcctcctggctgcttccacaaagcgagcctaccgtctaaggactaagatctgactccgcggaaggacagga-aaaacagaataaactgtacagtctgaatgggattctagaggagagttccaaaGCGA-CTGGACCATGCCATTAGCACGAGTCTGAG-GCTTAGCTTCC-CGA-CGAGGCTGTTGGAAGGGAAAGCNCC--CAAGTAGATGAACACACCGGGCCGTGAGTTAAATGTCGGGTGGAAGCTCAGGTCAGTCCACTCTGCTGAGTGCTATT s canFam1.chr18 28821893 1247 + 66173745 GTTAATTTAGTTTCTCAAAAAT-----------AAATGTTGGGGCACCTGTACAGGAAAGTCTCACCAATTTGTACAAGTTGTGTGGCTTGTATAAGTGAGTAAAACGGTATAAATTTGAAATAAATACTGTTCTTTTTCTTTTCAGCTTCGCACAGTAGGTAATCCAGAGGATGCTAAAAGTTTTGTCAGGAGGATAATTAAGAGCACGAAACAAAGatggaatcatggaattgtagagctggcaaagaactcccaggttcctgacccagagcac----tcaatgtgcagacctgtaaactgagccccacaggtgccgtgcaccccccaagac--atgtgtactaagcagcacagccaggacccatgcctgggtctctagctctccaggacctgttgcctttatgtagccaGAGCACCTAAACTCCTCAGGACCATCCTCCAGAGA--CTGTGCTCAGTGGGAAAAGTCTTCCAGAACA-ATGACCTGAC----AGGGTAGAGGG-AGAAAAAAGAAAGATGCTGGGAAAATTAGTTCCACACCTGCTTAGAGCCCATGAGCAAGGCGTCAGA-------ACATTGACTATGGCATATCTAACAGGCTCTACCCCCCATGCCTGACCCTTTT---------GTGAAAACTTTATAGATCTAACCCCAAAGTCTTTGGCTCAGAACG-GAGCTCAGACAAACATGGGCATGGCCAGCAAGCCCCAGACACAAGCCCCTC-ATGTGAGGAAATGGGTTTGTCCTGGCACATGACCTCCAGCCATAACAAAATGACCAGATTTTCCAATAAAAGTAACTGGACTCAGACATGGAGTAGAGTTTTGCCCTTCAGAGCACTTGTATCACTTTGT------GGGCCCACTTTTTGTTGTTTAGTATTGTCT-ATTTAAAACATCTAGAGACATCTTTTCCAGGAGG---CTTCAGAGCCAATCTAAAAGCC-ACAAACAG-GAACGTGTCTCCTGGCTTCATTAGCACCTCTCCTTCCCTACCTTTTTCTGAAACTACGTTATGCAAATGCTTCTTGGCTATTTCCACAAAGCAGGCCTACC-TCCAAGGACC-AGATCTGACT-CACGGAAGGACCGTACAGCAAACAAGGAGCTTTAGAATCCAAGTAGAATTCTGAACCAGAATTCTAAGCCAATTTTGACCATGGCATCAGCATGGGCCTGAGTGCTCAGCCTCCGCGAGCCAGGCTGCCGTCGGGAAGAGGACTGGCCAGCAG--GAAATGCTCGGCATGCACGTTAAATGTTG------------GGTCTGTTGAGGCTGCTGAGTGC---- a score=91.0 s hg17.chr17_random 1560189 1 + 2618010 T s panTro1.chr19 78927735 1 + 82489036 T a score=31414.0 s hg17.chr17_random 1560190 289 + 2618010 CTGTGTCCTGCACTGGTCCCTGGGG-CCAC----AGGAAAAGCCCTGCACC-CGGACCAGCACGAAGAGGGCACAGGTCTGACCTAAGTCCACAGGGGGAAAAAGCGGGAGACAGGGANGTCACTGACGGTGGCCAGGNCCCTAGGTNCATGTCTCAGTTCCTGGACTCCCTGACCAGGTGACCTTGAGGCTGTGTGCCCAGggaaataaccacgttcccac-------cccccagagccat---ctataggactcaatgaagtaatgcataaanattgcagtaactgtcaaatagaaagtcctc s panTro1.chr19 78927736 286 + 82489036 CTGTGTCCTGCACTGGTTCCTGGGGGCCACTTTGAGG------CCTGCACC-CAGACCAGCAAGAAGAGGGCACAGGTCTTACCTAAGTCCGCAGGGGGAAAAAGCGGGAGACAGGGAAGTCACTGACGGTGGCCAGG-CCCTAGGTTCATGTCTCAGTTCCTGGACTCC-TGACCAGGTGACCTTGGGGCTGTGTGCCCAGggaaataaccacattcccac-------cccccagagccat---ctataggactcaatgaagtaatgcataaaaattgcagtgactgtcacatagaaagtcctc s canFam1.chr18 28823140 256 + 66173745 CTGG---CTGGCCCAGACCCCAGGG-CTGG----AGGCAAAG-CCTTCACCTCAGA----------------ACAGTTC----------CCACAGCAGGCA-----GGGGGACAAGAAGGGCC-------TCTCCAGG-CCTGGGGACAGACTCCTTGCCCCCCCACCCC-CAGCCAGCTGATCTTGGGACCCAGTGCCCAGGGCAATAACCATGTTCCCCCACCCCCACCCCCAGAGTGAGTGACCGGTGGACTCGGTGAAGCAACACCTAGAAATCCCAGTGACTGGCACATAGAAAGTTCTC a score=60207.0 s hg17.chr17_random 1560479 662 + 2618010 aaccaatgtaagctGTGACTATGTgtccaaaccctttatcctaaattcaaaaattccaaaagctctgaaagcctaaagttttaccttctaattttggcagtaaaactcatttggcagcaaaacttgacctgagccggcaggaggccattggtggcctttactgacccTGACAGGGACTGGCTGTGCCTTTTGCTTCCAAAACACCNCATGTGTGAGAATGAAGTACAGCTCCAGACTCACTGAGACTCTTATGAGGTAGAAAGCAGGNTATGGCCCATGATCTCTCTATAAGAAGGTTCTGGAACAGTCAGTGTGGTCAAGGGATGTCCAAATCTGACCTCAAAATCATCCCTCAGTATGGGGTGTCCACCAATACTCCTGACTTAGCCAATGCCTCCTCACCCCAGCCCCACACCAGTCACACTCATGGGAGACATTCTCGACCTTCCCACTGCCCGACCCGCCTGACCCATCCAGCCCCTAGTCCTGCTTACCTCAGCCCCTAAACCTCTGGATGCCATTCTCTACCTTCTTGCAGGCCTTCCAGAATGGCCCCAGAGCCTTCTGCAGGGACCCCGAGGGAAGCTTTAGGCTGGGCTCCCCGTCCCTGCCTCACTGCCTCCCCCGCACTCTTGCTTCTGAGATCACTCTCAANGCAAACC s panTro1.chr19 78928022 657 + 82489036 aaccaatgtaagctGTGACTATGTgtccaaaccctttatcctaaattcaaaaattccaaaagctctgaaagcctaaagttttaccttctaattttggcagtaaaactcatttggcagcaaaacttgacctgagccggcaggaggccattggtggcctttactgaccctgacagggactggctgtgccttttgcttccaaaacacc-catgtgtgagaacgaagtacagccccagactcactgagactcttatGAGGTAGAAAGCAGG-TATGGCCCATGATCTCTCTATAAGAAGGTTCTGGAACAGTCAGTGTGGTCAAGGGATGTCCAAATCTGACCTCAAAGTCATCCCTCAATATGGGGTGTCCACCAATACTCCTGACTTAGCCAATGCCTTCTCACCCCAGCCCCACACCAGTCAC--TCATGGGAGACATTCTCGACCTTCCCACTGCCCGACCTGCCTGACCCATCCAGCCCCTAGTCCTGCTTACCTCAGCCCCTAAACCTCTGGATGCCATTCTCTACCTTCTTGCAGGCCTCCCAGAATGGCCCCAGAGCCTTCTGCAGGGACCCCGAGGGAAGCTTTAGGCTGGGctccccgtccctgcctcactgcctcccccgcactcttgcttctgagatcactctcaa-gcaaacc a score=30741.0 s hg17.chr17_random 1561141 224 + 2618010 ACCAGAACCCACGTCCNTTGTCACAGCTCTGCTCTTTGAACAGCCCAAAGGAAGGCAGCTTTTCAACCcaggggccggccaacttgctgtc---aaaggtcaggaggtgaatctgttctgcatttctggtcacattgtctctcctgca--actcctccactctacccttgtctccaaagcagccattgacaatgcacacattaatgggcgaggctgtgtgccaatgaaa s panTro1.chr19 78928679 223 + 82489036 acctgaacccacatcc-ttgtcacagctctgctctttgaacagcccaaaggaaggcaGCTTTTCAACCGaggggccggccaacttgctgtc---aaaggtcaggaggtgaatctgttctgcatttctggtcacattgtctctcctgca--actcctccactctacccttgtctccaaagcagccattgacaatgcacacattaatgggtgaggctgtgtgccaatgaaa s canFam1.chr18 28826089 212 + 66173745 ACCCGTGCCCACGCCC-TTGTCCCAGATCTGCTTCCAGGACATCCCAAACCCACGCAGCTTTGTCACAGAGCGGCCCACAAGC--GCTTTCATAAGAGGTCC--Aagtaaatacgtcgggcactgggggccacacgg---cccctggatcacaattccact---------tccagaaagcagctgttggcaaaccataaactcatgggcgcagctgggtgccaataaaa a score=63265.0 s hg17.chr17_random 1561365 820 + 2618010 ctttatggacaaggccgggcacggtggctcacacctgtaatcccagcactttgggaggcagaagtgggcgcataacttgaggtcaggcattcaagactagcctggccnacatggtgaaaccccatctctactaaaaatacaaaaattagnccggacatggtggcgtgtgcctgtaatcgcagctattcgggaggctgagacaggagaatcggttgaacgtgggaggcggaggttgcagtgagccaagatcacaccactgcacttcagcctgggtgacagagtgagccaagaaaggaaagaaaggaagagaagaaagaaaggaagagaagaaagaaaggaagagaagaaaggaaagaaggaaggagggaaggaaggaaggaagaagagagagagagagacagaaagaaagaaangaaagaaagaaagaaggaaggaaggaaagaaagaaagaaagaaagaaagaaagaaagaaaaagaaagaaagaaaagaaagaaagaaaagaaaagaagggaaggagggagggagggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagnnaggannnnaNAAGAGNAAttnatngacaaaaacangcagtaggccgnattttgctgtggntggtagtttgctgacntctgNTTCCTGNTGCAtnccactccctctgccctgttccnacagggtctccacacagcaggtaggagggccttntcagaaggcagatctgaccatgtcaccttccaccctaagcccttcaatggctcccccactgcaccctggaagaggagaagAATga s panTro1.chr19 78928902 773 + 82489036 ctttatggacaaggccgggcatggtggctcacacctgtaatcccagcactttgggaggcagaggtgggcgcataacttgaggtcaggcattcaagactagcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattag-ccggacatggtggcgtgtgcctgtaatcgcagctattcgggaggctgagacaggagaatcggttgaacatgggaggcggaggttgcagtgagccaagatcacaccactgcacttcagcctgggtgacagagtgagCCaagaaaggaaagaaaggaagagaagaaagaaaggaagagaagaaagaaaggaag-------------gaaggaaggtgggaaagaaggaaggaaggagagagacagacagacagacagacagaaa-gaaagaaagaaa--------gaaagaaagaaagaaagaaagaaagaaagaaagaaaga----------------------aaagaaaagaaaagaagggaaggagggagggagggagggaaggaaggaaggaagggagggaggaaggaaggaaggaaggaaggaaggaaggaaggaaAAGAAaagagaaatttatagacaaaaacaggcagtaggccggattttgctgaaggtggtagtttgctgacctctg-TTGCTGTtgcat-ccactccctctgccctgttccaacagggtctccacacagcaggtaggagggccttttcagaaggcagatctgaccatgtcaccttccaccctaagcccttcaatggctccccCACTGCACCCTggaagaggagaagaatga a score=17154.0 s hg17.chr17_random 1562185 123 + 2618010 ggaggaaggggaggaaggagagaagggagaggatggggaggaagCAGCCACACGG-CAAATGGAAGCCTTCTCCTCCGAGCTGATCCTCAGTGGCCTGTCCTACCAGCTAAGGGGGAGATTGCA s panTro1.chr19 78929675 124 + 82489036 ggaggaaggggaggaaggacagaagggagcggatggggaggaagCAGCCACATGGTTAAATGGAAGCCTTCTCCTCCGAGCTGATCCTCAGTGGCCTGTCCTACCAGCTAAGGGGGAGATTGCA s canFam1.chr18 28828376 115 + 66173745 GGAGGAAGAGGAGG-AGGACGACGGGGGGCGGGGGGGGGGAACG----CGCAGGC-TGGCTGGAAAC---TTCCTCTGACCTGACTCTCCACGGCCTGCTCTCTGAGCTCAGGCGCAGACCATA a score=19810.0 s hg17.chr17_random 1562308 127 + 2618010 -GCAGGTCTTTAAGCATCCAAGT---CCCC---CACCCCAC--NCCCCACACACTCCCAGCATGTTATCAACATCCCAGCCACACAC----ATCAACTCTGAGGCTGGATTCTAGAAGTGAGCATAAAGAACAGA--GCTGG s panTro1.chr19 78929799 126 + 82489036 -GCAGGTCTTTAAGCATCCAAGT---CCCC---CACCCCAC---CCCCACACACTCCCAGCATGTTATCAACATCCCAGCCACACAC----ATCAACTCTGAGGCTGGATTCTAGAAGTGAGCATAAAGAACAGA--GCTGG s mm5.chr11 118616738 119 + 121648857 -GCAGATTATCCAGGGTCTAAAT---CTCCAAGTAGCCTTC---CCACTACCACTCTCAGCAATCGATCAAGGTCCCAGCCATACACAGTAACCATCCCTGGGCCT----------------CATGACGGCCATAATGTTGG s canFam1.chr18 28828491 122 + 66173745 GAAGGGTCTTCAAACCTCCAAGTACCCCCC---CACCCCCGCCACCCCACGTCCTCACAGCACATCCTCGGCGCTCCAGCCACACGT----ACCAACTCT--GGCTGCATTCTAGAAG----CCCACAGAGTAGG------- a score=27350.0 s hg17.chr17_random 1562435 296 + 2618010 agctgtgcacagtggctcacgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcgggagttcaaggccagcctggccaacatggtgaaaccctgtctctactaaaaatacaacaattagccaagcatggtggcaggcaactgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaatctgggaggcagaggttgcagtgagccaagatcgtgccgttgctctccagcctgggtaacagagcaagactctgtctcaaaaatgaagaaCA s panTro1.chr19 78929925 296 + 82489036 ggctgggcacagtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacctgaggtcgggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaacaattagccaagcatggtggcaggcaactgtagtcccagctactcaggaggctgaggcaggagaatcgcttgaatctgggaggcagaggttgcagtgagccaagatcgtgccgttgcactccagcctgggtaacagagcaagactctgtctcaaaaaagaagaaCA a score=31673.0 s hg17.chr17_random 1562731 270 + 2618010 GAGCTGGACACCTGGAGCACCCAACAGGCTTCTGCTGTGAAATGCAGTGGGTCGC------CACAAAAATCAGCCTTAA--ACTAC-AGGAAAGAATGCAGAGGTTACA-------------------ATGCAGGTCCCAGGCATCTGCCAAGCAATGA---ACAC---GGATGCTTCCNCTCCGTTTTTAAAGAAGGCTTAAGCTCTCTCAGGCAAATGCATCAGAGTAACACCAAGGAGAAGGCCCAGTATGGCCCTGGGCCCTCCTGGAGACACAGAGGGCATCTTCAGGACAGAGTCCCT s panTro1.chr19 78930221 269 + 82489036 GAGCTGGACACCTGGAGCACCCAACAGGCTTCTGCTGTGAAATGCAGTGGGTCAC------CACAAAAATCAGCTTTAA--ACTAC-AGGAAAGAATGCAGAGGTTACA-------------------ATGCAGGTCCCAGGCATCTGCCAAGCAATGA---ACAC---GGATCCTTTC-CTCCGTTTTTAAAGAAGGCTTAAGCTCTCTCAGGCAAACGCATCACAGTAACACCAAGGAGAAGGCCCAGGATGGCCCTGGGCCCTCCTGGAGACACAGAGGGTCTCTTCAGGACAGAGTCCCT s mm5.chr11 118616857 254 + 121648857 GAGCTGGCCTCTTTGAGCACCCGACATCGTTGTGTGAGGAAA------GGATCATCTGGGGCACAGCGGCTGCCATTAAGTACCCC-AGGGGCTAAC----AAGCTACACGTTTTCTCTTCTGCTGGGATGGAG---CCTGGCAAACGCCAC-CACTGAGCCACACCCAGCAAACTTCC-TTGCCCTTTAAAAGAAATCTTAAACTTCCCTTGCCAAATGGATC----CAACACAAGAGGGAAAG----------------------CTGG----ACAGAATG----TCCTGGGCAGAAAACCC s canFam1.chr18 28828613 255 + 66173745 GGCCTGGACACT--GAGCG-CCAACATCATTCTGTCGTGGAA------AGCTC--------CACCATCCCCAGCCTTGC--ACCACGAGGGAAGAACAGAGGGGTGACA-------------------GTGAGCACCCCAAG--TCCGCCGGGCAGCGA---GCAT---GGCTGCTTCC-CTGGGCCTCTGAAGAAGCCTCGCGCTCCCTTACATACACACATCCCCATGACACCGAGGGGCACATCTCGGCGGGCACCTGGCGGCTCAGG--GCACCAGCGGCGTCTTCCAGACTGAGTCTCT a score=7756.0 s hg17.chr17_random 1563001 203 + 2618010 CAAGACGAAACGA-CCCCAGGCTCACTTTAGTGGAGAGAGAGACACTGGCTGAGAACAGTCTGTTCTTCTGTAAGAAT-------GACAAATGAGGCCCTTGAGTTTCAGTGGCCCCAACACAAGCAGCA----CAGGACTTACTTTACTCGTGGTTTTTTTNAGTCCAGGAGAAN-TTGCTACTATAAAAGGGAAGGACTTGCAGTGCCCATAAA s mm5.chr11 118617111 198 + 121648857 TGAGACCCTATGA-CTTGCTGCTGCTGCTCAGGGAGCGAAAGGTG--------GAACATCATGTGCTTGCTCATAAACCTCGGTCAATGAAAAAGACCTTGGACTTTGAGG---TCCAACACAAGCTGTG----CGGGACTCGCTCTACGGGTGGTTTTTA-AAGTCTGGGAGAGT-TCGCCACCATAAAAGGGAAGGGTTTGTGGTGCTCCTAAA s canFam1.chr18 28828868 197 + 66173745 TGAGGCCACACGAGCTCACAAGTCAGAGGAGGGGACAAAGAGCGA--------GAACATTTCGTCCTTCTGTAAAAAC-------AGCAGACAAGCCCCGCCGGCTGCATG-GCCCCCACACGGGCCGCGGGGAAAGGACTTACTTTGCTCACGGGGTTTT---CTTCAGCAGAGCATCCCTGCTACTCAAGGGAGGGACTCACAGGTGTCATAAA a score=282.0 s hg17.chr17_random 1563204 3 + 2618010 AGA s canFam1.chr18 28829065 3 + 66173745 AGA a score=2634.0 s hg17.chr17_random 1563243 106 + 2618010 NCACTCTGTTCCCCATTTCCTAATTTAACCAAGTGAAATGGtcccctcctccatttctccctccctccctgtctcctcctcctccacccttccctctctccctctc s canFam1.chr18 28829100 93 + 66173745 TCTCTCTGCTCCCTAGCTCCTAATTTACGCACACGCGGTGATACAC-------CTGCTTCCTCCCTCC------CCTGTCCATCCATCCCTCCCGCTGCCTCCCTC a score=261768.0 s hg17.chr17_random 1563786 2875 + 2618010 ATtttgctgagcccctactgtgtgccaggcacgtgctcattcatcggccctgaaaacacagaaacaagaGCTTATATTCTAGACAAAGACACAGACAGGAAGCCTACAGGCAAGTCACTTACTCAACAAGATAACCTCCATTTGCAATGAGCGCTTCCTGCACTGggatagtgtaggttctgctgcagtagaaaacacactcacatctcataggtttgcggaaaggtttgtttcttgtttatatcacagtcgagtgtggtccgggcagctcttcttggcaatgctcctcctagtggtcacaccaagacccaggctCCTCACATCCCTGAGCCCTTCCTACTGACGTGAGTGGCCGCCTTGGTCACCGCACAGGAACAGGGAGTGTGGACCACGCGGGGGCCCGTGACAACATctggaagtggaaggcattgcttccgtctacaaccccctaaccctgacctcactgcaagggagactggaaaatagagtcctcctttaaatcnttcccggaaaaagaaatagaatttggtgaacacaggcattgtctctAGAATAATAAATGAAATAAACANGGATGATGTACCAGAGGGTATCTGGGTCAAGCGGCCTGTTGTGGATAGATAGGGCAGGGAAGGTTGCTTTAAGGGGGTGACTTGGATCCAGCTAggaaagagcactcagagcccaaagaacagcaggtgcaaaagactggggcgggaaagcacnctggcaagttcaaggaacagaaaggtcaaggagataggcaggtggggagcgagagtgggaagaagggagGGCTGTGCATAGGCCAGGGCAGGTGGTGACCCTGACATACATCAGAGCCACACCCCAGACACCACGAAACCTCCCAtgctggaccctccccactccccagagactgatccagtgattctggcctgggatcagactttatatttGTTACTGCTTTGTTTAAGAAAataatacatatgctcaaaagtacacaaataattagtataggctcaatgaatagtcagagtggacaatccaggcaaccaccactgagatggagaaatagaatacacagatccctggagggcccctcttccctccccttccccccagcctcccacctttctcctccctaaagggaaccactatcaagatttccatcaaaatctatgctgagtacagtggctcaagcctataatcccagcactttgggaggctgaggcgggcagatcatgtgaggtcaggagctcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatataaaaatgaacagggcatggtggcgggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaccctggaaggcagaggttgcagtaagccaagataacaccactgcgttccagcctgggagacagaatgagatttcatctaaaataaaaaaaatcaaaaatcaaaaaTctaggcaataccattcaggacataggcaggggcaaagatttcatgacaaaaacaccgaaagcaatcgcaacacaagcaaaaattgacaaatgggatctaattaaagagctctgcacagcaaaagaaactatcatcagagtgaacacacaacctacagaatgggagaaaaatttgctatctatccatctgacaaaggtctgatagccagagtctataaggaacttaaacacatttacaagaaaaaatcaaccccattaaaaagtaggcaagagatatgaacagacacatctcaaaagaaaacatacatgtggtcaagaagcatatgaaaaaaagctcaacatcactgaacattagagacatgcaaatcaaaaccacaacaagacatcttctcacaccagtcagaatggcgattattaaagtcaagaaacaacagatgctggcgaggttatggaggaaaaggaatgtttttaccctgttggtgagagtgtaaataag--------------aagacgacgtggtgattcctcaaagatctagaggcagaaataccagttgacccagcaatcccattactgagtatatacccaaaggaatataaatcgttctattataaagatacatgcacgtgtatgcccactgcagtactattcacaattgcaaagacatggtatcaacccaaatgcccatcaatcacagattggataaagaaaacatgatacatatataccatggaatattatgcagccaaaaaaaggaatgagaacatgtcctttgctgggatgtggatggagctggaagccattatccttantaaactaacacaggaacagaaaaccaaacacaacatgttcttataagtaggagctgaatgatgagaacacatggacacagggttgggggaataacacacactgaggcctgttgggcagggggagggagagcatcaggaagaatagctaatggattctgggcttaatacttaggtgatgggacgagctgtgcagcaaactaccacagcacacatctacctatgtaacaaacctacacatcctgcacatgtacccatgaacttaaaataaaagttgaagattttttttaaaaanaggttanaaaaaaaanagatttccatcttgcccatttctgaacttcacatgagtggaatgcctggattctttgattctacattatttggtgaggttcatagangtatagatgtgctgtttagtgtttagtgttcatagagtgtagttctgtttagaatcataattgtgtgatttcacaatttatttggccacactactgtgttgcttgngcctngggttacttcaagcnttgaagttgtngaaaaacagtgctgctgtggtcacactcatgcacacatttcagtgcatctgggcttgcatttctggcaggtga s panTro1.chr19 78931274 2878 + 82489036 ATtttgctgagcccctactgtgtgccaggcacgtgctcccttttcggccctgaaaacacagaaacaagaGCTTATATTCTACTTAAAGATACAGACAGGAAGCCTACAGGCAAGTCACTTACTCAACAAGATAACCTCCATTTGCAATGAGCGCTTCCTGCACTGggatagtgtacgttctgctgcagtaaaaaacacactcacatctcataggtttgtggaaaggtttgtttcttgtttatatcacagtcgagtgtggtccgggcagctcttcttggcaatgctcctcctagtggtcacaccaagacccaggctcctcacatccctgagcccttcctactgacgtgagtggccgccttggtcaccgcacaggaacagggagtgtggaccacgcgggggcccgtgacaacatctggaagtggaaggcattgcttccgtctacaaccccctaaccctgacctcactgcaagggagactggaaaatagagtcctcctttaaatc-ttcccggaaaaagaaatagaatttggtgaacacaggcattgtctctAGAATAATAAATGAAATAAACA-GGATGATGTACCAGAGGGTAGCTGGGTTAAGGGGCCTGTTGTGGATAGATAGGGCAGGGAAGGTTGCTTTAAGGGGGTGACTTGGATCCAGCTAggaaagagcactcagagcccaaagaacagcaggtgcaaaagattggggcgggaaagcac-ctggcaagttcaaggaacagaaaggtcaaggagataggcaggtggggagcgagagtgggaagaagggagGGCTGTGCATAGGCCAGGGCAGGTGGTGACCCTGACATACATCAGAGCCACACCCCAGACACCACGAAACCTCCCATGCTGGACCCTCCCCACTCCCCAGAGACTGACCCAGTGATTCTGGCCTGGGATCAGACTTTATATTTGTTACTGCTTTGTTTAAGAAAataatacatatgctcaaaaatacacaaataattagtataggctcaatgaatagtcagagtggacaatccaggcaaccaccactgagatggagaaatagaatacacagatccctggagggcccctcttccctccccttccccccagcctcccacctttctcctccctaaagggaaccactatcaagatttccatcaaaatctatgctgagtacagtggctcaagcctgtaatcccagcactttgggaggctgaggcgggcagatcatgtgaggtcaggagctcaagaccagcctggccaacatggtgaaaccccatctctactaaaaatataaaaatgaacagggcatggtggcgggcacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaccctggaaggcagaggttgcagtaagccaaaataacaccactgcgttccagcctgggagacagaatgagatttcatctaaaataaaaaaaatcaaaaatcaaaaaTctaggcaataccgttcaggacataggcaggggcaaagatttcatgacaaaaacgccgaaagcaatcgcaacacaagcaaaaattgacaaatgggatctaattaaagagctctgcacagcaaaagaaactatcatcagagtgaacacacaacctacagaatgggagaaaaatttgctatctatccatctgacaaaggtctgatagccagagtctataaggaacttaaacacatttacaagaaaaaatcaaccccattaaaaagtaggcaagagatatgaacagacacatctcaaaagaaaacatacatgtggccaagaagcatatgaaaaaaagctcaacatcactgaacattagagacatgcaaatcaaaaccacaacaagacatcttctcacaccagtcagaatggcgattattaaagtcaagaaacaacagatgctggcgaggttatggaggaaaaggaatgtttttaccctgttggtgagagtgtaaataagttcaaccattgtggaagacaacgtggtgattcctcaaagatctagaggcagaaataccaattgacccagcaatccctttactgagtatatacccaaaggaatataaatcgttctattataaagatacatgcacgtgtatgcccactgcagtactattcacaattgcaaagacatggtatcaacccaaatgcccatcaatcatagattggataaagaaaacatgatacatatataccatggaatattatgcagccaaaaaaaggaatgagaacatgtcctttgctggggtgtggatggagctggaagccattatccttagtaaactaacacaggaacagaaaaccaaacacaacatgttcttataagtaggagctgaatgatgagaacacatggacacagggttgggggaataacacacactgaggcctgttgggcagggggagggagagcatcaggaagaatagctaatggattctgggcttaatacttaggtgatgggatgagctgtgcagcaaactaccacagcacacatctacctatgtaacaaacctacacatcctgcacatgtacccatgaacttaaaataaaagttgaagattttttttaaaaa-aggttaaaaaaaaaa--gatttccatcttgcctatttctgaacttcacatgaatggaatgcctggattctttgattctacattatttggtgaggttcataga-gtatagatgcgctgtttagtgtttagtgttcatagagtgtagttctgtttagaatcataattgtgtgatttcacaatttatttggccacactactgtgttgcttg-gcct-gggttacttcaagc-ttgaagttgt-gaaaaacagtgctgctgtggtcacactcatgcacacatttcagtgcatctgggcttgcatttctggcaggtga a score=78095.0 s hg17.chr17_random 1566661 518 + 2618010 tatctagggatagagntagctgggttctggggcaggtgtatgttcacctttagtagattctgctaaacagtcttccnaaagtgattgttcccatttacattcctaccnagcaatatagggatgccccaatcattctatatttctangcaacccttaggactggcaancctattcactgtagccattcca-gtgtctagatggcagtatctggttctac------ctgatgactagtaaagcacttggntgaagtgcttgttcaagtctttttcccatttttCTGTGAGCCCNttttttggntgacatatgttgccaatatcttcttccacttggtccttgc-----ctttttgctctcttaattgtaccctttgattgtgcccattgctcttattcttaatataatctgatttgttaatatttccccttgtggttaatattctttgaatcatGAAGATATTCTACA---TCTTCTGTGTTATCTTCTAGAAGACAGATTTTTTTT-GAT--ACAGTGTGAGGTAGGGATCAAGCTT s panTro1.chr19 78934152 511 + 82489036 tatctagggatagag-tagctgggttctggggcaggtgtatgttcacctttagtagattttgctaaacagtcttcc-aaagtgattgttcccatttacattcctacc-agcaatatagggatgccccaatcattctatatttcta-gcaacccttaggactggcaa-cctattcactgtagccattcca-gtgcctagatggcagtatctggttctac------ctgatgactagtaaagcacttgg-tgaagtgcttgttcaagtctttttcccatttttCTGTGagccctttttt--ggtgacatatgttgccaatatcttcttccacttggtccttgc-----ctttttgctctcttaattgtaccctttgattgtgcccattgctcttattcttaatataatctgatttgttaatatttccccttgtggttaatattctttgaatcatGAAGATATTCTACA---TCTTCTGTGTTATCTTCTAGAAGACAGATTTTTTTTCGAT--ACAGTGTGAGGTAGGGATCAAGCTT s canFam1.chr18 28832787 521 + 66173745 TGTccaggagcaggg-cagtggggccccggggcaggcatacgctcggcttccatagattctgctaaacagttttcc-aaagtggttgttccggtttacacgcctacc-agccatgtaggagcgtccccatggtcccgcatcttca-ccagcccgtggaatcaccaa-tctactcatgccagttatcctatggggttaga--gcagtgtctccgtctacatttctctgacgatgactgaggcactttg-tgaagtacttgttcaagtctcttactcgttttcccttgaCCCCTTTGTC--AGTCACACCGACCGCAAATGCCTCCT---GCTTTGTTCTTACGTCCGGTCTGCACGCtcttaatggcaactttcgat--gaacaggagcccttggttttactataaccccatgtgtccatcttctcctttatggttagtactttccgtatcatgaaaatattccagatattcttctaaattatcttctagaaagtagaattgatttccatgcacggtgtgaggtaggggtcaagatt a score=27306.0 s hg17.chr17_random 1567179 315 + 2618010 CCTGtttattctttttttttttttttttttttttgagtcggagtctcactcactccaggctggagtgcggtggtgcaatctctgctcactgcaagctctgcctcctgggttcacaccattctcctgcctcagcctcctgangtagctgggactacaggcgcccaccaccacacctggctaattttttgtatttctagtagagacagggtttcaccatgttagccaggatggtctcaatctcctgaccttgtgatccgcccacctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggctGC s panTro1.chr19 78934663 309 + 82489036 CCTGtttattctttttttttttttttttt-----gagatggagtctcactcactccaggctggagtgcaatggtgcaatctctgctcactgcaagcgctgcctcctgggttcacaccattctcctgcctcagcctcctga-gtagctgggactacaggcgcccaccaccacacccggctaattttttgtatttctagtagagacagggtttcaccatgttagccaggatggtctcgatctcctgacctcgtgatccacccacctcagcctcccaaagtgctgggattacaggtgtgagccaccgcgcccggctGC a score=25458.0 s hg17.chr17_random 1567494 192 + 2618010 TTCCTGTTTATTCTAAGGTGGCTATTT-GATGGNATCCAGCACCATAGGTTGCTGGACCCATAGGTTGCAAAGATCTGCCATGC--CCTCCTTAACGGGACCGCCTTTGTCATGTGCCA-GTCATATACACCCTCTTGTGCTggttccatgncctgggctctctgctgtcttcattagtctatttgtctgtccttg s panTro1.chr19 78934972 190 + 82489036 TTCCTGTTTATTCTAAGGTGGCTATTT-GATGG-ATCCAGCACCATAGGTTGCTGGACCCATAGGTTGCAAAGATCTGCCATGC--CCTCCTTAACAGGACCGCCTTTGTCATGTGCCA-GTCATATACACCCTCTTGTGCTGGTTTCGTG-CCTAGGCTCTCTGCTGTCTTCAGTAGTCTATTTGTCTGTCCTTg s canFam1.chr18 28833308 177 + 66173745 ttcctgtttttattcagatggttatccaaatgg-acccagcac----------------cattgatggcaaagatc-atcataccacctctttgactgggccacttttgtctcatatcatatgttgtttgcccatatatgctgagtctgtt-tctgggttctccattctgttcattggtctgttagtctaaccttT a score=21887.0 s hg17.chr17_random 1567686 114 + 2618010 tattagaatctttttactgtctgttggtgattctaacacgcagtcggggttaagaaccaTCAATCCAGAACCTTGAAGTTCATGGTAACAAGTCTGGGTGTTAGTCTAAATGCA s panTro1.chr19 78935162 114 + 82489036 tattagaatctttttactgtctgttggtgattctaacacgcagtcggggttaagaaccaTCAATCCAGAACCTTGAAGTTCATGGTAACAAGTCTGGGTGTTAGTCTAAATGCA s canFam1.chr18 28833723 113 + 66173745 TGTTCAAattttttaacc-tcccatgataactctaacatgcagccagggttgagaaccaatgATCGAGGACCTTGCAGTTTAGGGTAACAGGCTTGAGTGCAGGTCTAAATGCA a score=71203.0 s hg17.chr17_random 1567800 353 + 2618010 ATTATGTAGAAACCCAATAAAAAATTTGTAGAGGAAAAATAGATTAACTTTG--------------TGGCATGGGAAGAGAAACGGCAGAACCNGTGG-GGAAGGCATCTGTGGAGTGGCTGAGGAAACCAGGTAACAGGCCTGAAGCTGAAATCTCAGAGCAATCCAGCCGGCTGTTCACTGTCTCTCTT--CTCCCCGCTCCAGACCT-CCAGACCCTCCCACACCAAAGTACAAACAAGGAATG-ACAAACACAGGAAGGAAACGTCG-CTGTTTAAGTC----ATCAGCCAAATTTAAGGAAATCTGATCCCTCCTGCAACCACGTTTTATTCCCTGGTTACCCTGGCATTTCCTATAATTAATGNGNCTAGN s panTro1.chr19 78935276 349 + 82489036 ATTATGTAGAAACCCAATAAAAAATTTGTAAAGGAAAAATAGATTAACTTTG--------------TGGCATGGGAAGAGAAACGGCAGAACC-GTGG-GGAAGGCATCTGTGGAGTGGCTGAGGAAACCAGGTAACAGGCCTGAAGCTGAAATCTCAGAGCAATCCAGCCGGCTGTTCACTGTCTCTCTT--CTCCCCTCTCCAGACCT-CCAGACCCTCCCACACCAAAGTACAAACAAGGAATG-ACAAACACAGGAAGGAAACGTCG-CTGTTTAAGTC----ATCAGCCAAATTTAAGGAAATCTGATCCCTCCTGCAACCACGTTTTATTCCCTGGTTACCCTGGCATTTCCTATAATTAATGG--CTAG- s mm5.chr11 118618320 342 + 121648857 ACCACGTGGAGACCCAGGAAGGGATCCACAGGGGAAAAGTGCAATCCATTTGTGGGGGAGGGGGGATGGCATGAGAAGAGCTACAGCAGACTC-GTGGAAAAAAACCTTCATGGGGTAGGTAGGAGAAAGGGGCAGGA-------------------AAAGTGATCCAACCAGCTCTT---TGTCCCTCTTTCCTGCTGGCTCCAAACCT-CCAGACCTCTC----GTGAGGAATGGGCAGTGAAGGTACACAGACAAAAAAGGAGCGT----TCTCTCAGGCTGGTACCAGGCCCACTTGGGGAAGCTAGGTCCCTCCTGCAATGCGTTTTTATTCTCCAGTTGCCACAGCACTTCCTGTAATTGATGG--CTAG- s canFam1.chr18 28833836 302 + 66173745 AGTAAGTAGATGCCCAATAAGGGATTTGCAGA-GAAAAATAGATTAAATTTG--------------AGACGTGGGAAGAGCGATGCCAGAAGC-ACGG----------------AGTGGGTGGGGAA-------------------------TGCCCAGATCAACCCATCCTGCTCCCAACTCCTTCTCTT--CTCTCCTCTCCAGACCTCCCAGATCCACCAAAGCCAAAGTGAAAAGAA-------ACACCGACAAAGAAGGAGAGTTTCCTGCCTGGGTC----ACCAGCCACGCTTACGGAAATCTGATCCCTCCTGCAACCAG--TTTATTCTTGAGTTGCCATGGCACTTCCTGTAATTAATGG--CTAG- a score=158404.0 s hg17.chr17_random 1568153 342 + 2618010 GTTTTAATTNAAACATTGATTAGCCACTAATTAGTCTAATGATTAGTCTTGG--GGAGGAGACATGGCTGTCA-ACACCGCAAAGGAGGAAGGGG--AGATGGTGAAAGATTATGGCTTAGGTAGAAATGCTAT-TTCTACCTTCCTCCAAGCCAAATGTTTTCT-ATGATTTGGGTCCATTATAAATGATGTTTTCAATGTGAATTTTCCTAATCGGTTTGAGTCTGATGAAGTCCCNAGGTGACTGATGCCAGGAAGAATGAATCTATTCGCCTTTTCATCAGATTTCAGACTCTTAATGCAGCTAAAGAGCTTCTTCCCACTTAGAGAAGAATTCGTTTCTGTCTC s panTro1.chr19 78935625 340 + 82489036 GTTTTAATT-AAACATTGATTAGCCACTAATTAGTCTAATGATTAGTCTTGG--GGAGGAGACATGGCTGTCA-ACACCGCAAAGGAGGAAGGGG--AGATGGTGAAAGATTATGGCTTAGGTAGAAATGCTAT-TTCTACCTTCCTCCAAGCCAAATGTTTTCT-ATGATTTGGGTCCATTATAAAAGATGCTTTCAATGTGAATTTTCCTAATTGGTTTGAGTCTGATGAAGTCCC-AGGTGACTGATGCCAAGAAGAATGAATCTATTCGCCTTTTCATCAGATTTCAGACTCTTAATGCAGCTAAAGAGCTTCTTCCCACTTAGAGAAGAATTCGTTTCTGTCTC s mm5.chr11 118618662 335 + 121648857 GTTTTAATT-AAACATTGATTAGCCACTAATTAGTCTAATGATCGGTCTTGG--GGAGGAGGTAAGGTTATCA---AACATGGGGTGGGGGTGGG--GGATCCCTAAAGACTGCAGCTTAGGTGAAAATGGGAT-TTCAGCCTCCCTCCAGGCCAAATGTTTTCT-ATGATCCGGG-CCATTATTCTCCAGGCTTTCAATGGGAATTTTCCTAATCGGTTTGCGTCTGATGGAGTCCC-AGGTGACGGATGCAGGGAAGATTGAATCCG-TCGCC-TCTCATCAGGTCCCAGGCTCTTACCGCAGCTAAAGAGTCTCCTTCCACTTAGAGAGCTTTTCCTCTCTGTCCC s canFam1.chr18 28834138 343 + 66173745 GTTTTAATT-AAACATTGATTAGCCACTAATTAGTCTAATGATTAGTCCTGG--GGAGGAGACAGGGCTGTCAGACCCCATCAAGGAGGAGGGGGGCAGATAATGAAAGATTATGGCTTAGGTGGAAATGCTCTATCCTCCCTCCCTCCAGGCCAAATGTTTTCT-ATGATTTTGGTCTATTATAAACGATGCTTTCAATGTGAATTTTTCTAATCGG-TTGAGTCTGATGAAGTCCC-AGGCGACTGGTGCAAGGAAGATTGAATCTATTCCCCTTTTCATCAGATTTCAGCCTCTTAATGCAGCTAAAGAGCCTTTCCTCACTTAGAGAGGAATTAGTTTCTGTCTC s danRer1.chrNA 88157059 331 - 390413307 GTTTTAATT-AAACATTGATTACCTGCTAATTAGTCTAATGATCGTCCCCAGATGAGGGAGACCAGGT----A-----CAGAAAGTGACAGAGGA--GAAAAATGAAGGATC-TGAAGCAAATGAAAATTGTAT-TT-GAGATCCCCGAGGGCTCACTGTTTTGTGATTATTTTTG-CTTTTATAAATGAGGCCTTCACCATGCATTTCTCTAATTTATGTTCGTCTGATGGC-TCCC-ATATGACTGATGCATAGAAGATTGAGTATGTGCACATTTTCATCAAATTTGGGAAATTTCCTGCCACTGGAAAGCAATAAATAAATTCAGAAAAAGCCTGTGTCTGGCGC a score=82748.0 s hg17.chr17_random 1568495 698 + 2618010 CACAATGAAGTCATCCTGGGCTGAGGCTGTTCTCCTCCCAAGTCCTTTATAGGGG--------GTCTGACCTTGCCAAGGNACTTCTGAGATGCAAACATCACA---GGGNTGT------TTCCCCCAGAGAAGATTCTGCAGACACCTTGNTGCCCCCACA-------TACCTGTTCCTCATTCTTTGCCACTTCGCCCAGACCTCCCAAAATATTGACACAGCTCTAGTTTCATCTGCAGACAGAATACTACTTGTGTGTAACTTGCTGTCAATCAAGGATGTATTTGGCCCCCCNTGACCCTCAGCCAACAAGGAAAGTTGAGTTGCTGTGCATGGACACAGTTCATATTAAATTGCATTGGAAGTTATCCTACTAGAAGTTAATAACGCAGTAAATCTT----GGGGCAGGGGTGGGGTGATGTGATAACATTGGCCAATCAATCCCCCAAGGATCTTTTGTAAGTTTNGAATTTACGTAGAACAATACAAAATTNCCCTTGAAGCCCAATCTTNCGTGTTGAGTATAAAGCTTGGGAGAGAACTGAGGCGTGAAACT---------TGAAATCCNAGNA----AAGGACCAGGGAAGAGGGAAAGACGCTGACTACCAAGGAAGGCAGGTCCCGACGAGCAGGCCTCGCCAGCCCCAAAAAGCCTCCNGTGTTTGTCTTTGGGGTTCCTGCACTACTGGAAACACCTCTGCTCGGGTGGGAGAAGGGATGGGAA s panTro1.chr19 78935965 688 + 82489036 CACAATGAAGTCATCCTGGGCTGAGGCTGTTCTCCTCCCAAGTCCTTTATAGGGG--------GTCTGACCTTGCCAAGG-ACTTCTGAGATGCAAACATCACA---GGG-TGT------TTCCCCCAGAGAAGATTCTGCAAACACATTG-TGCCCCCACA-------TACCTGTTCCTCATTCTTTGCCACTTTGCCCAGACCTCCCAAAATATTGACACAGCTCTAGTTTCATCTGCAGACAGAATACTACTTGTGTGTAACTTGCTGTCAATCAAGGATGTACTTGGCCCCCC-TGACCCTCAGCCAACAAGGAAAGTTGAGTTGCTGTGCATGGACACAGTTCATATTAAATTGCATTGGAAGTTGTCTTACTAGAAGTTAATAATGCAGTAAATCTT----GGGGCGGGGGTGGGGTGATGTGATAACATTGGCCAATCAATCCCCCAAGGATCTTTTGTAAGTTT-GAATTTACGTAGAACAATACAAAATT-CCCTTGAAGCCCAATCTT-CATGTTGAGTATAAAGCTTGGGAGAGAACTGAGGCGTGAAACT---------TGAAATCCA--GA----AAGGACCAGGGCAGAAGGAAAGACGCTGACTACCAAGGAAGGCAGGTCCCGACGAGCAGGCCTCACCAGCCCCAAAAAGCCTCC-GTGTTTGTCTTTGGGGTTCCTGCACTACTGGAAACACCTCTGCTCGGGTGGGAGAAGTGATGGGAA s mm5.chr11 118618997 567 + 121648857 CCTGAAGAAGCCAGCCCAGGC--------------------GCTCTGTGGAGAGGTGGGGAGTGTAAGACCTCGTTAAGG-ACTTCTGAGAAGCAAAGATAGTGAGTGGG-TGTGATGTCCTCCCCCACATGGACACTTGCGACCCCCCCTCAACCCCCGTGCCCAGGTTACCTCTTTCCCATCACTCTCCTGCTCCATCATACCTC------------CAGAGCTCTGGGTCTGTCT------AGAAT-CGACAAGT----------CTCTCAG--------ATACACGGCACCTCCTAGCCCTCCAACTGTAGGAA---------------------ACACTCCTCCGGGTACATC-------------TCCAGCCTGAGGCCCATGAGACAGTGATTAT----------------------------------------GCCCATTTCCCAAGCGTC-TTTGTCAGTCT-GGAATCACACAGAACAGGGTAACATT--CCTTAAAGCCTTGCCTT-GCTGCTGAGTG-AAAACTGGGGAG---ACACAGACAAGAAAGA---------TGGACCCTAAGAAGGCTGGGGGCTTGGGAAGGTGAGGAGGTCCTGA--ACCTG-------AACCCCAGAAGAGCACACCTGAAAAGTCAGAACATGACCTC-----------TGAGGGTTCTCACACTGCCAGAAATGCTGCTGCCTGAGTGGACAAAGC-ATGGAAA s canFam1.chr18 28834481 573 + 66173745 CACAATGAAGTCATCCTGGGCTGAGCCTGTCCCCCTCCCATGTCCTTTGTGGGGG--------CCCAGACCTTGCCAAGG-ACTTCTGAGATGTGAGTGTAGCA---GGG-CCT------TTCCCCCAGAGCAGATTTTGCAAGCACCTGA-TGCCCCGTGT-------CACCCTTCCCTCATT-------------CCCCGACCCT-------------------------------------------------------------------------------------------CGGCCCTCAACCAAAAAGAGAGGTTGGGTTGCTGCATGTGGATCCAGCCCAGCCTGAACGGCATTTGAAGTTGCCCCGTAAGAAGTTGACTGTGCGGTAAATCTTCATAGGAGGAGACATGGTGTGATG------ATTTGGTTAATC-ATCCCTGGTGTACTTTTTGTAAGTTT-GGGTTTATGCCCAACAATACAAAACT-CCTGTAAAGCCC-------TGTGCTGAACACAAAGCTCAGGAGAGAAGAAATGCATGAAACCTGCACAGGGTGAAATTCA--GA----AAGCCTTGGGGGTCAGGGAAAGATGCCCATTACCGA-GGAGGCAGGTCCTGACGAACAAGACTCGCCAGCCTTGAAGAATCTCA-GCATTGACCTGTGTCTCTCAGACAGGGCCAGAGAAA-----GCCTGAG-----AAAGACTTGGAA- a score=8284.0 s hg17.chr17_random 1569193 69 + 2618010 AGACACAGAACAGTTGGGAA--TACTC-TGCTTTTTT------TAAGTGTGGTAAAACACA----ACGTTAAATTTACCATT s panTro1.chr19 78936653 73 + 82489036 AGACACAGAACGGTTGGGAA--TACTC-TGCtttttt------taagtgtggtaaaacacacacaacgttaaatttaccatt s mm5.chr11 118619564 67 + 121648857 AGGC---------TTGA------ACTCATGCTTTTTCCGCTTATAATTTTAGCAAAATATATACAGCGCAAAATCTTACCTT s canFam1.chr18 28835271 78 + 66173745 agaagaagagaagataaGAACTCATGC-TGCtttttt---aaaaaattgtaataaaatacacataatacataatttaggatt a score=846.0 s hg17.chr17_random 1569262 3 + 2618010 CTT s panTro1.chr19 78936726 3 + 82489036 ctt s mm5.chr11 118619631 3 + 121648857 CTT a score=37611.0 s hg17.chr17_random 1569265 483 + 2618010 ACCtttttttttttt--gagatggagcctcactctgttgcccaggctagagtngcagtggcgcaatctcagctcactgcaacctccactttccagattcaagcaattctcctgcctcaacctcccgagtagctgggattacaggcacgtgccaccatgccntggctaatttttgtattttttttttttttgangacggagtctcgctctgtcgcccaggctggagtgcagtggtgttatctcagctcactgcaggctccgccccccggggttcacgccattctcctgcctcaggctcccgagtagctgggactacaggcgcccaccacctcacctggctaattttttgtatttttagtagagatggggtttcanctatgnttggccnaggctggtctcgaanctcctgacctcaggtgatccacccngcctcggcctctcaaagtgctgggattataggcg-tgagccaccgcgcccggccTACTC s panTro1.chr19 78936729 473 + 82489036 accttttttttttttttgagatggagcctcactctgttgcccaggctagagt-gcagtggcgcaatctcagctcactgcaacctccaccttccagattcaagcaattctcctgcctcaacctcccgagtagctgggattacaggcacgtgccaccatgcc-tggctaattttt----tttttttttctttga-gagggagtctcgctctgtcacccaggctggagtgcagtggcgtcatctcagctcactgcaggctccgccccccggggttcacgccattctcctgcctcaggctcccgagtagctgggactacaggcgcccaccacctcgcccagctaattttttgtatttttagtagagatggggtttca-ctatg-ttgacc-aggctggtctcgaa-ctcctgacctcaggtgatccgccc-gcctaagcctctcaaagtgctgggat-acaggcggtgagccaccgcgcctggccTattc a score=98778.0 s hg17.chr17_random 1569748 787 + 2618010 TCaccatttgtaagtgcacggttcagtggcattacctg-gccattgttgtatagccaccac--ctgtccatagaactcttccatcttcccaaactacaattctgtccccattagatgacacctcttactccctcctccccccggtccctggagaccactgttctcc------------tctgtccacaagg------------------agggaccttctataagtggaatcacacaggatttgtccttttgtgactggcttatttcacttagcataatgtcctcagggttcatccnacgttagagcacgtgtcagaatttccttccatttttaaggctgaattctatt--attttctggaaagatcatagtttgtttaaccattcatctgtctatggacactgg-gngnttgcttccatctttcggc-----tGGGAAATCCTGACACTCCTTGATCCNGGCATTCAGATTCAGATATTTGAGTCTTCAGGTGAACAAACAGGTTAGACAGGGCCCTATGCAAGCCCCACACCNCGCCCACAAATCNTCTGTTTCACTCTCTTCAAATCGGCAAAGGAGAAGCAAGATTTGTCCTGAGCTCTCGAGACTCTATCAGAATTTTTATGTCCCTTTTACATCCCCTTTTTATCTCTCTTACTTGTCATTTTCCAATAGCTTTTGCCAGAAGAGCACACGGGACACATTCTACACAAACTTTTATCATTTCACCGAGATGGGGCCAGAGCT----GCACGAAATCTCCTTACCTGGGAGGGGCCTGGAGAGGAGCGGAGCAGAGAGGAGGGGCctggagaggagcggagcagaga s panTro1.chr19 78937202 781 + 82489036 tcaccatttgtaagtgcacggttcagtggcattacctg-gccattgttgtgtagccaccac--ctgtccatagaacgcttccatcttcccaaactaaaattctgtccccattagatgacacctctcactccctcctccccccagtccctggagaccacagttctcc------------tctgtccacaaag------------------agggaccttctataagtggaatcacacaggatttgtccttttgtgactggcttatttcacttagcataatgtcctcagggttcatcc-acgttagagcacatgtcagaatttccttccatttttaaggctgaattctatt--attttctggaaagaacatagtttgtttaaccattcatctgtctatggacactggcg---ttgcttccatcttttggc-----tGGGAAATCCTGACACTCCTTGATCC-GGCATTCAGATTCAGATATTTGAGTCTTCAGGTGAACAAACAGGTTAGACAGGGCCCTATGCAAGCCCCACACC-CGCCCACAAATC-TCTGTTTCACTCTCTTTAAATCGGCAAAGGAGAAGCAAGATTTGTCCTGAGCTCTCGAGACTCTATCAGAATTTTTATGTCCCTTTTATATCCCCTTTTTATCTCTCTTACTTGTCATTTTCCAATAGCTTTTGCCAGAAGAGCACCCGGGACACATTCTGCACAAACTTTTATCATCTCACCGAGATGGGGCCAGAGCT----GCACGAAATCTCCTTACCTGGGAGGGGCCcggagaggagcggagcagagaggaggggcccggagaggagcggagcagaga s canFam1.chr18 28835349 734 + 66173745 taaccacgtatgagggcacagttcagtggcaccaagtacacccacattgtgcagctgccaccgccatccacc-cacattcctgtctttccaaagtgagaccccctc---------tgtctttccccaccaccacctcccccag--ccccagcacccacccccaccccacctcgtactttctgtctctgtgagtttttcgacttgactctggggatcatgtataagt-gaatctta-aatatttgtccttgtgcgattggattatttcactccacgtgataattttaaggcccatcc-acgttgtagcaggtgtgagaattcccttcc-ttttcaaggctgagtaatattccattgtgtgga------ctttccccttcatgtctgcatccattgatggacgcctg-g---gttcctccacctttaggctgctgtggggaacattcacacttctccacct-ggtgcacaCATTTAGTCACTCGTGTCTTCAGGTAAAAGATCAGGTGAGATGGGGCTC--TGCAAGCCTCCAGGT-CTCTC--------TCTGCTTTACTCTCTTT-AATCAACAA------------ATACACCCAAGACTCCCAAGACACCATCCG-----------CCTTCTTACATCTCC-TTTTATCGAATTTTCTCGTTATTTCCCGATAGCTTTTGCCACACAAGTGCAAGGGACACGTTCTGCACAGACATTT-TCATTCCACCGACACTTGCCTCAAGCTGGTGGTAGGAGGCCT-CTTCCCTGGGAAG----------------------------GGGGCCC-----GGAGCAGAGCCCAGa a score=6502.0 s hg17.chr17_random 1570535 67 + 2618010 ggaggggcctggaaaccgacgccggggtctgagctgcggctttgccagtgacttgggcaagacccct s panTro1.chr19 78937983 67 + 82489036 ggagGGGCCTGGAAACCGACGCCGGGGTCTGAGCTGCGGCTTTGCCAGTGACTTGGGCAAGACCCCT a score=26725.0 s hg17.chr17_random 1570602 210 + 2618010 ggcctctctttgcccaagtATAAGTGGGGC-CTTGTGCCTCTGGCTCTGACAGGCTTTGGGATGTGTTATCTGAGGACTCTGCACAGTTGCATGGGCATAAAAAGCGGCTGCTCCACAGCCCCA--CGGGATCCGCGCCAAGTG-TGTGCACGAGGCCAACAGTGGCTCACGTGAAGCCTCTGGCTGCCAGCCCCAGACTTCAGAAATGGTAGG s panTro1.chr19 78938050 210 + 82489036 GGCCTCTCTTTGCCCAAGTATAAGTGGGGC-CTTGTGCCTCTGGCTCTGACAGGCTTTGGGATGTGTTATTTGAGGACTCTGCACAGTTGCATGGGCATAAAAAGCGGCTGCTCCACAGCCCCA--CAGGATCCGCGCCAAGTG-TGTGCACGAGGCCAACAGTGGCTCACGTGAAGCCTCTGGCTGCCAGCCCCAGACTTCAGAAATGGTAGG s canFam1.chr18 28836183 190 + 66173745 GGCCTCTCTTTGCTCAACTGTAAATTGGACGCCACTCCTTCTGGTTCTGGTAGGCTTTGG---TCACTCTTTGACAGCCCT-------------TACACCAAAAAAAGTCATGCAGAAGCCACATGTGGGGCCTTGGGGGAGTGCCGTGTTTGAGGC-----ATGGCATTCGTGAATTCTGTAGCTTTCAACCCCAGGTTCCAGAA---GCAGG a score=26283.0 s hg17.chr17_random 1570812 363 + 2618010 NAAAANGggcctggcgcggtggctcatgcctataatcccagcactttggaaggccaagacgagtagatcacctgaggtcaggagttcgagaccagcctggccaacatggcaaaaccctgtctctactaaaaaaa--ataaaaa-aataaataaataataataataataaataaaaatcagccaggtgtggtggtacacangncntttaatcccagctactcaggaggnctgaggcaggagaatcacttgaatccaggaggcagaggttgcagtgagctgagattgtgccactacancntcncagcctgnggtgatggagcaagactccatctcaaaaaaaaaaagaaaaagaaaaaaTGNAATGGT s panTro1.chr19 78938260 348 + 82489036 AAAA--Gggccaggcgcggtggctcatgcctataatcccagcactttggaaggccaagacgagtagatcacctgaggtcaggagttcgagaccagcctggccaacatggcaaaaccccgtctctactaaaataataataataataataa-----taataataataataaataaaaatcagccaggtgtggtggtacaca---cctttaatcccagctactcaggagg-ctgaggcaggagaatcacttgaatccaggaggcggaggttgcagtgagctgagattgtgccactacac--tc-cagcctg-ggtgatggagcaagactccatctcaaaaaaaaa--gaaaaagaaaaaaTG-AATGGT a score=52826.0 s hg17.chr17_random 1571175 378 + 2618010 AGTAAAAGGAAGCTTTCTCCAGGACAAGGGACTGGAGGGT-CAGCAGTGCAGG----------GGGCCATTGCTGCTGCTTTATCCAAATTACATCCCCGGGAGCTCTCATCACTGTAG-ACTCAGAGTAACTACCAAAGGCTGAACAGNGTAACAGGTGCCTGGC--CGCGAGAGGCTCTTTACTGATGACAGTGTGTTAATCTCCACAGGAGGTGtatcgtgtccac-ttaaaggccaggaaattcggggcacagagctagcaggtcatgtgcacaaagccacatagttggtCCCAAACCCCTGTGACAGGGACAACAAGCTGGCCCCAACAGACATGGGGNCTCCCTGGCCCCCAAGGTGGGTAACCNAGGGGGAACTGCACTCCCCACC s panTro1.chr19 78938608 375 + 82489036 AGTAAAAGGAAGCTTTCTCCAGGACAAGGGACTGGAGGGT-CAGCAGTGCAGG----------GGGCCATTGCTGCTGCTTTATCCAAATTACATCCCTGGGAGCTCTCATCACTGTAG-ACTCAGAGTAACTACCAAAGGCTGAACAG-GTAACAGGTGCCTGGC--TGCGAGAGGCTCTTTACTGATGACCGCGTGTTAATCTCCACAGGAGGTGtatcgtgtccat-ttaaaggccaggaaattcggggcacagagctagcaggtcatgtgcacaaggccacatagttggtCCCACACCCCTGTGACAGGGACAACAAGCTGGCCCCAACAGACATGGGG-CTCCCTGGCCCCCAAGGTGGGTAACCAAGGGG-AACTGCACTCCCCACC s canFam1.chr18 28836373 338 + 66173745 AGTGAAAGGGAGCTCTCTCTAGGAGGAGGGCCGGGGGGGTCCGGCAGTGCAGGACAGTGTCCTGAACTGTCACTGACGCCTCCTCCA-------------GGTGCTTCTGTCATCGTGGAACTCTGAGTGGCCACCAACGGTAACATAG-GTAGTTGGTACCCAGCCTCACAGGAGCCACTTTCCTGATGGTCTGACGttaatccccacaagagctttattgtgctcactttaaaagtcaggaaatctggggcactgagctgtcatgcactgtgcccaag--------------cccaaagtcctatggtagagagagcgagctggtccca--------------------------gagccgggtgtccagtggg-gcctgcccttcccacc a score=60262.0 s hg17.chr17_random 1571553 683 + 2618010 CAtattagtccgttttcatgctgctgataaagacatagccaaggctgggtactttataaagaaaaataagtttaatagactcaaagttccacgtagctagggaggcatcacaatcatggtggagggtcacaaacacgttttacatggtggcagaaaagagagaatgaggctgggtgtggtggctcatgcctgtaatcccagcactttgggaggctgagatgggtaaatcacctgaggttgggagttcgagaccagcctggtcaacatggtgaaagcccgtctctacntaaaaatacaaaaaattagccgg-tgtggtggcagacacctataatcccagctactccggaggctgaggcgggagaatcgcttgaaaccaggacgcagaggttgcagtgagatcatgccattgcactccagcctgggcaacaagagcaaaactccatctcaaaaaaaaaaaaaaaagagagagagagagagaatgagagccaagcnaaaagaggtttcccctcataaaaccatcgcatctcatcagacttactctctaccatgagaacagtatgggggaaccacccccatgattcaattatctcccaccagntttcctcccacaacacatngggaattatgggagctataattcaagatgagatttgggtggggacacagccaaaccatatcaCACT s panTro1.chr19 78938983 680 + 82489036 CAtattagtccattttcatgctgctgataaagacatagccgaggctgggtactttataaagaaaaataagtttaatagactcaaagttccacatagctggggaggcatcacaatcatggtggagggtgacaaacacgttttacatggtggcagaaaagagagaatgaggctgggtgtggtggctcatgcctgtaatcccagcactttgggaggctgagatgggtaaatcacctgaggttgggagttcgagaccagcctggtcaacatggtgaaagcccgtctctac-taaaaatacaaaaaattagccgggtgtggtggcagacacctataatcccagctactccggaggctgaggcgggagaatcgcttgaacccaggaggcagaggttgcagtgagatcatgccattgcactccagcctggtcaacaaaagcaaaactccatctcaaaaaaaaaaaaaaaaaagagagagagagagaatgagagccaagc-aaaagaggtttcccctcataaaaccatcgcatctcatcagacttactctctaccatgagaacaatacgggggaaccacccccatgattcaattatctcccaccaggtt-cctcccacaacacat-gggaattatgggagctataattcaagatgagatttgggtggggacacagccaaaccatatcaTACT a score=32188.0 s hg17.chr17_random 1572236 290 + 2618010 CCACCCCCACTGCATGAGGACGGAACTACGTGTCTGGTTCTAGCCAAAGGAGTGGAATTGAAAAAGTGTGGTGTCTCTTCCAGGATGAGG-GTCCACATCCCC-----ATCTTGGAGAGGACACTGTCACAGAAGGAGGAGCGGCTGAGCCTNGTCNTTGTGAA-------------GGACACTGTGAGAAGAGAGCAAGCGTGCATGTGGTGTGCTATGTTGCAGGNAGNGTGGGGACTGCTTGTCACAGCAGTTAACAGGACTGACTGATACACCNTCCTGCCCAAACCCCAGGGTGACCTCT---GGCC- s panTro1.chr19 78939663 285 + 82489036 CCACCCCCACTGCATGAGGACGGAGCTACATGTCTGGTTCTAGCCAAAGGAGTGGAATTGAAAAGGTGTGGTGTCTCTTCCAGGATGAGG-GTCCACATCCCC-----ATCTTGGAGAGGACACTGTCACAGGAGGAGGAGCGGCTGAGCCT-GTC-TTGTGAA-------------GGACACTGTGAGAAGAGAGCAAGCGTGCATGTGGTGTGCTATGTTGCAGGA--GGTGGGGACTGCTTGTCACAGCAGTTAACAGGACTGACCGATACACC-TCCTGCCCAAGCCCCAGGGTGACCTCT---GGCC- s canFam1.chr18 28836711 283 + 66173745 gcaccCCCACAGCATGCCGGTGGGGCCGGATGTCTGGTTCTGGCCAAAGGAAGATGATCGGAAGACCATGCTGTCACTTCCGGACCAAGGCAGCCACATCCCCGATGGATCGTCCCTACGTGGCCTCCACAGCCAGAGGAGT-------CCC--TC-TTGGGGAAGGTGTCAACACTGGACATCGTGCGAGCAA---AAATAAGCATGCGGTGTGTGAGGTG--------AGCGGTGA--GCCTG-----GCGGCCAGCAGGACTGACCGGTGCATCTCCCCACCCAG--TCAAGGCCGTGCTCTGGGGGCCT a score=30669.0 s hg17.chr17_random 1572526 222 + 2618010 ----TGGTGAATTGGGTCAAGGCAACCGTTTCGGAGGGAGG-----CCTCATGGTGTGGGC-CATTCCCATGCCTGCTCCTCACAGACGACTCTAACATG---------------GGACGCAGCCACACACTCT-CACTGCTGGAGAACGGCTCCGCTCAGCCTCCCTGGGTCGGTGTGGCAAGCCTCTGTGGAGAGcagatatgtgccaggagctcgtggtacagagaggaataaaacagcctttgg-- s panTro1.chr19 78939948 222 + 82489036 ----TGGTGAATTGGGTCAAGGCAACCGTTTCGGAGGGAGG-----CCTCATGGTGTGGGC-CATTCCCATGCCTGCTCCTCACAGACGACTCTAACATG---------------GGACACAGCCACACACTCT-CACTGCTGGAGAACAGCTCCGCTCAGCCTCCCTGGGTCGGTGTGGCAAGCCTCTGTGGAGAGcagatatgtgccaggagctcgtggtacagagaggaataaaacagcctttgg-- s mm5.chr11 118620515 231 + 121648857 ----TAGTTAACTGAAACCAGGC-ATCAATGCAGAGAGAAG-----CCTCAAAGCTTAGATAAACTCTCATGCCTACTAT-----GACAAAGCTGGCATGACTGACATCACAGCCAGACACAGTCACACATTCT-GACTTCCCAGCAACAGCTCTGCACAGCCTGCC-AGGTCATGACAGTGGGCCTTCCTCGAGAACCCCTGGACATCAAAAGCCGGTGGTGAAGGAAGGGATAAAATAGCCTGCAG-- s canFam1.chr18 28836994 206 + 66173745 CACTGAGTGAG--GGGGCGGGAGAGCTGTCGGAGAGAGGAGAGCACCCTCAC-GCATGCGC-CGTGGTCATGTCTGCTCATAATGGACGAGGCCAGCCGG---------------CGATCTAGCC---CGTGCTGGGCTGCTGCAGGGTGGGCCTGCTCGGCCTCCA-GGGT----------GGGCCCCGCAAAGGTCGG------GCCGGGAGCTGGCAGTACAGAGAG-----AGACAACGCGCAGGG a score=4212.0 s hg17.chr17_random 1572748 47 + 2618010 -----cctcaggatg-----------ctgatgagataaacgaagacagatgggccatggngtg s panTro1.chr19 78940170 46 + 82489036 -----cctcaggatg-----------ctgacgagataaatgaagacagatgggccatgg-gtg s canFam1.chr18 28837200 63 + 66173745 CCGCATCGCGGACTGGCGACCTTTACCTGATGGGCTGAAGAGGGGCCAGCGGGCCCGGGGGTG a score=0.0 s hg17.chr17_random 1572795 3 + 2618010 gga a score=100.0 s hg17.chr17_random 1572795 1 + 2618010 g s panTro1.chr19 78940216 1 + 82489036 g a score=573.0 s hg17.chr17_random 1572796 2 + 2618010 ga s panTro1.chr19 78940217 2 + 82489036 ga s mm5.chr11 118621012 2 + 121648857 GA a score=60409.0 s hg17.chr17_random 1572798 723 + 2618010 agaca-aggcccccggacacttggcccaaccagaangctcaggaaatgcttcttgggcaaggggagtcctcagcttggtcttaaaaga---ntatgcaccatgggccaggggcagagaagaagagagggcagtccaggcagagggcacggcacgaac-aaggcacagaggcggATGGAGGCACACTCAGGGCCAGCACTCGGGGGNCGTTGCAGAATCAGACCTGGNCCCNACAGACCTGGAACCTGCCAGCTGTGCCTGG-CAGCATAGAGATAGTCCTGGGCAACCAGGAGCACTGGC--AGCTGGTTNACAACAGGGGNAGANGGNCATGAGCGGGTTNCCCATGCTAAACACGCCAGCCTAGTGCAGTGCAGGGCATGATGTGGGGGACAAGGCTNGGAGGCCAGGAGACCATGGAG-----------------AGATGGCCCCTACGGTCCTGCCA-------GTGCCCCNTGCTTC---------TGAAAGGCAT------------------GCAGCAGGCACAGACCAG-CAGTGGGTACCCGAAGGAAAGGAGACAGAGAGATCAGGTCAGATTTGAGA--CAGCTTCAAAACATCAACACAGCAGTGTTCTCGTAAATGGTCACCTGCCACCTGGG-ACAGAAATAGAGGGAATTTCAAAATCCATCTTTCTCTCAAAAAAAAAGACCCCTTGATGAGGCCACAAGGGACACTTGCC-CGTTATTCCTACNTTNAGCAAGAAAGAAAAGGCAGCAGCTGTCATGCTTAGAGAGGGAC s panTro1.chr19 78940219 709 + 82489036 agaca-aggcccccggacacttggcccaaccagaa-gctcaggaaatgcttcttgggcaaggtgagtcctcagcttggtcttaaaaga----tatgcaccatgggccaggggcagagaagaagagagggcagtccaggcagagggcacagcgcgagc-aaggcacagaggcggATGGAGGCACACTCAGGGCCAGCACTTGGGGG-CGTTGCAGAATCAGACCTGGCCC--ACAGACCTGGAACCTGCCAGCTGTGCCTGG-CAGCATAGAGATAGTCCTGGGCAACCAGAAGCACTGGC--AGCTGGTT-ACAACAGGGG-AGAGG--TATGAGCGGGTT-CCCATGCTAAACACGCCAGCCTAGTGCAGTGCAGGGCATGATGTGGGGGACAAGGCT-GGAGGCCAGGAGACCATGGAG-----------------AGATGGCCCCTACGGTCCTGCCA-------GTGCCCC-TGCTTC---------TGAAAGGCAT------------------GCAGCAGGCACAGACCAG-CAGTGGGTACCCGAAGGAAAGGAGACAGAGAGATCAGGTCAGATTTGAGA--CAGCTTCAAAACATCAACACAGCAGTGTTCTCATAAATGGTCACCTGCCACCTGGG-ACAGAAATAGAGGGAATTTCAAAATCCATCTTTCTCTCAAAAAAAAAGACCCCTTGATGAGGCCACAAGGGACACTTGCC-CGTTATTCCTACTT--AGCAAGAAAGAAAAGGCAGCAGCTGTCATGCTTAGAGAGGAAC s mm5.chr11 118621014 549 + 121648857 TGACAGAGGTCCCAAGACGCCCAGCCTAGTCAGAG-ACTGAAGGAAT---------GTGAGGCG-GTTTACAG--------TAACAGGCTCACCTGTGCCATGTGTGTGGGCTAG---------GAAGGACACTCAAGCAGAGCAGACAGCTACAGCAAAGGCACAAAGTC--AAGGAACCAC-----------GTGCCTGGGAG-------AGAGACAAGAGGGACCC--AC---------ACCCACAGGCCATTCTGGATCAGTACA-AGAT--TCTTGGCCTACCAGGACTGCCAAC--AGCTAGTTGTAAGCAGA---AGATA--CTTGGGCAGGTT-CCCATCCTAAATATGTCACCTTA--GCAGCAGGAAGTGTGACCTGGAGGGAAGTGTT-GGAAACCAGGATA----GGAGGCACTGTGCTGTCTTACAGGTGGTATCTA-GGCCCAGGCAAGATGGGGAGCACG-TAAGCG---------TGAAAAACTA------------------ACTACAGACCCAGGCTA--CAGAGGACACCTGAAGGAAAGAG----------------CAGA----AGA--CA--TGCAAAGAGACCTCACTTCAGT----------------------------------------------ATGTCAACATGCTT-------------------GCCCCTCTATAGAGCC------------TG-------------------AGCATGGAGG----------AGCACTTGAGCTTGAAGGAGTAT s canFam1.chr18 28837263 628 + 66173745 AGGCG-AGGCCC--AGACATGCAACCCAACCGGAG-GCTC-----GTGACTCCTGAGTGA-----CTCCTCATTCCAGCCTTAAAGGC--------------AGGCAGGGCACAGTCAAATGGAGCGGGCACGCCGGGCAGAGGGCACAG-GTGTGCAACGATGCAGGGGCGCCAGGAAGCACACAAGGGGCCAGGACTAGGGGG-CACAGGAGAACCTGAC----CCC--ATAGAC-------------------------CAGC----GGGT--------------AGAAGCGCAGGCTGTGCTGGGTGTGAACAGGAG-AGGGA--CCTGAGCAGGTT-CCCGCCCCAAATATACCCCCTTA--GCAGCAC-----------CGGGGAGCCTGGCTAGGCGGCTGGGAGCACAGGAAC-----------------AGGTGTACCCGGCGGTCCTACTC-------G-GCACC-CAGGTCCAGATGAGATGGAAAGCACCCCACGGTGAAGGGGTTGGCAGCAGGCACAGGCCCGACACCGGACGCCCAAAGGAAACAA-------------GGTTGGATCTAAGACTCAGCTTCAAAGTGTTGGCACAGCAGC-------------AGCACTTCCAGGCGAGGCATCGAGATGCGGGGACGTTCGAAATCCAGCTTCCTCTCAAAAA-----GACCCGAGATGAGGCC--AAGGTCAGTCTGCCACATCTGCAATATTT--AATGAGAACAAAAAAGCAGC-GCCATCAGTCCGGGAAGAGAC- a score=3024.0 s hg17.chr17_random 1573521 45 + 2618010 NAACTGTAAGGTCTCTGAATTCTCTCCTGGCAG----CCTGAGAAGAAA s panTro1.chr19 78940928 44 + 82489036 -AACTGTAAGGTCTCTGAATTCTCTCCTGGCAG----CCTGAGAAGAAA s mm5.chr11 118621563 29 + 121648857 --------------CTGAG------CCTGGTGGAGCACCTGAGGCTAGT a score=42383.0 s hg17.chr17_random 1573566 190 + 2618010 GGAGCACCTGAGCAGGGAGGAACAGCCTCAGCAGCAAGGAGCACCTGAGT-GGGAGGAACATCTAAGCAGGGGGAA-CACCTGAG-AGGGTGGATCAGCCTGATTGGGAAGAGCACCTAAACAGGAAGGAGCACCTGAGCAGGGAGGGACACCNTGAGTNGGGAGGAGCACCTGAGT---GAGAGGAGCAGCAGTG s panTro1.chr19 78940972 188 + 82489036 GGAGCACCTGAGCAGGGAGGAACAGCCTCAGCAGCAAGGAGCACCTGAGT-GGGAGGAACATCTAAGCAGGGGGAA-AACCTGAG-AGGGTGGATCAGCCTGATTGGGAAGAGCACCTAAACAGGACGGAGCACCTGAGCAGGGAGGGGCACC-TGAGT-GGGAGGAGCACCTGAGT---GAGAGGAGCAGCAGTG s mm5.chr11 118621592 194 + 121648857 GGAGTATCTGAGCAGGGAAGAGCA-CCTAAGACTGGTAGAGTATCTGAGCAGAGAGGAACACCTGAGCTTGGTGAAGCACCTGAATCTGGTGGAGCACCTTGGCAGGGAAGAACACCTGAGGTTGGTGGAGTATCTGAGGAGCAAGGAGCACC-TGCACCTGGTAGAGCACCTGAGCTTGGTGGAGCACAGCAGCC s rn3.chr10 13369044 182 - 110733352 GGAGCACCTATGTA-GGAGGAGCA-CCTATGAAG-GAGGAGCACCTATGT-AGGAGGAGCACCTATGTAGGAGGAG-CACCTATG-GAGGGGGAGCACCTCTGT-AGGAGGAGCACCTATGTAGGA-GGAGCACCCATGTAGGG-GGAGCACC-TATGT-AGGAAGAGCACCTATGT---AGGAGGAGCACCTATG a score=68180.0 s hg17.chr17_random 1573756 754 + 2618010 AG---------CCCCAGCCAACTGCAGCTGT-GCTGTCCAACGCACACACGCCAGCCTGGGGACTCGCTNCCCCNNTNCCACCNTCCTCCCCTCTGATCCCAAACACTCTTTCTGCTGACTTGGCAAATGCCCCGAGACAGATTCTCCC-----NTTNCCCCCCACCAAGCTGCTCTTGCTCCTGCTGTGTCACTGAGCCAGCTGCTGCCATTTTGAGGGCATGCCATC---ATCCGGCCAGCCCACAGGCCACTGGTCCTCCTTCAGCCCAGGCCCCCACGCCTCAGGAAGCTCATTTCCAG--ATGTGCGGGATGAC----------------------------------GGCACCCTGGCTTACCTGGGCTCAGCACGGGGGCACTTTCCAGGCAGACAGCATATTGGAGACGGCTTCTTCCCACCTGGAGGGGACCCCAGGAAAGCTG-GTCCTCATTCNTTGACGGACCTTGCAGGNATGAGGGTGGATCAGGTCTCAGAATCCCGGTTGGATGGGCCTAAGGAGGGAATGGGGNAAACTGAAGACACGCTGCCTGGTTGGATGCATGTGCGCTTCTCAGGACCCCGGGNCTGCTGGCGGGTCCCTGGGAGTCTGAGATGGAGCTGGGTCCTGCTTAACCA-----TCAGGGNAG----CACAAGATCACCCCA-----CTCATGCTT------------------------------------TCCTTTAATTGTTGCAATGAATGCTTATGACCTGCCCACCTGCCCTCCAGGCAGGTTGACAGATGAAGAAATCAATGGACAGGCCCAGGCTCCAGGGAAAAGCTTCTGGCCACTGGCAAGGCTACGAAA s panTro1.chr19 78941160 743 + 82489036 AG---------CCCCAGCCAACTGCAGCTGT-GCTGTCCAACGCACACACGCCAGCCTGGGGACTCGCTCCCC----TCCACC-TCCTCCCCTCTGATCCCAAACACTCTTTCTGCTGACTTGGCAAATGCCCCGAGACAGATTCTCCC------TTCCCCCCCCCCAAGCTGCTCTTGCTCCTGCTGTGTCACTGAGCCAGCTGCTGCCATTTTGAGGGCATGCCATC---ATCCAGCCAGCCCACAGGCCACTGGTCCTCCTTCAGCCCAGGCCCCCACGCCTCAGGAAGCTCATTTCCAG--ATGTGCGGGATGAC----------------------------------GGCACCCTGGCTTACCTGGGCTCAGCACGGGGGCACTTTCCAGGCAGACAGCATATTGGAGACGGCTTCTTCCCACCTGGAGGGGACCCCAGGAAAGCTG-GTCCTCATTC-TTGACGGACCTTGCAGG-ATGAGGGTGGATCAGGTCTCAGAATCCCTGTTGGATGGGCCTAAGGAGGGAATGGGG-AAGCTGAGGACACGCTGCCTGGTTGGATGCATGTGCGCTTCTCAGGACCCCGGG-CTGCTGGCGGGTCCCTGGGAGTCTGAGATGGAGCTGGGTCCTGCTTAACCA-----TCAGGG-AG----CACAAGATCACCCCA-----CTCATGCTT------------------------------------TCCTTTAATTGTTGCAATGAATGCTTATGACCTGCCCACCTGCCCTCCAGGCAAGGTGACAGATGAAGAAATCAGTGGACAGGCCCAGGCTCCAGGGAAAAGCTTCTGGCCACTGGCAAGGCTACGAAA s mm5.chr11 118621786 701 + 121648857 AGAAGGCACATCTCTGGCC--CAGGAGCTGTAACTGTACATCCAGCACTTGCTAGC------ACAGGCTGCCC-----------CTGCCTCCTCTCAGTCCACTCTCTC-TTCTGCTGACCCAGGGAAGGCCTCCAGACAG---CTCTCAGGTCATCCCACTCCCAGAAGATGCTCTGCCTCCTG-TCTGTCACAA--------GCTGGCA-TTTGATAACATGCTGCCTGAACTCCACCAGCCAGC--------------CCCACAGCCCTTGCCTGCA---------AGGTTCATATCCAGGCATGTAAACGATGCCACCTGCCTGCTTAGGTGCCTGTTCCACCCATCCTGGTGCCCTGCTTCAGCTGGGCTCAGCTTGGGGCAGTTCTCTA---------------------TGCCTCTCCCTAGAT-GAAGATATTCCAAGAAGGCTGAGTGCT----------------------------------ATAAAGCCTTGAGATCCAAAATGG--GGGCTACAGAAGGCAATGAGGAAGGCTG----------------------------GCCCATCACAGTA-CCAGAG-CTGCCTCCAGATCCC-AGAAGGTGGAAACAGGGCTGACCTGCCCTTCACCAGGAAGCCTGGG-AGAGACCACAGGCTATCTCAAGGCTCTGCCTGCTTGCAGATGAGAGTGAGCACTAGGGTGGAGGGAGGGTGTCCCTTAACTTCTGAACTCAGTG-TTGTG-CCTGCCTACTTA--TTCCAAGCA---TATCAGGTGCAGAAATCA--GAGCCAGCCCTGGCCAGAGAGTGAAGCTTGTAG-CACTGGGTGGGGCATG--A a score=131694.0 s hg17.chr17_random 1574510 1406 + 2618010 CAGCGCCAAGTTCCAGGAGCCCAGGAATG---------GAAGGATAACCTTTAGTTAGAGGCAcacagaaggcttcctggaggaggtgacatttgaatag--ggttctgagggatgtgc---aggatttcaaacggaggaaagaaccaggcccatgtcccacacagaggTCCTGGGCCAACGCTGCCCAGGGTGAAGAAGATCAAACGGTGACAAGATGCA-CGTGGGGACGGGGNAAGCCATGTAGGGACACTGCCAGCCAGAAGTTCactcagttattcaacaanacatttattggctgcg-aggactgagctggaggcactgaggctacaAACTGTG-TGACTCAGT-GCAGCAGCAAGGCTGAGTGGTGAGGANGGGTCCAGGGCACCAG-GGGACTGAAGACAGAAGCCAGACGTCCAGGAGCCTTCCAGCAGGCAGCTGCCGGAGACCCTGGACAANGANGGTGAGATGGGGCCAGCCTGTGCCTTCAGAGGAAGACAGTGGCAGCTACTTGCTCATCTGGTGGGTCCCCAGGAGGGAATTCAAACATTGTCCCC-ATCCTCACGACAAGTACACTCAGGGTGACCAGAGAAACTTGGGTCACAGTGGCCAGTGGGCTCCTGGGGAGAAGCTGTGGGGACTGCAGGTGACTTCTCTGCCCATATGAATTATTGACACACCCAGCCAGGTCCACTGNTGTTNCCTACAACCTGTGCTGTGGCTGCCCCTTGCTCATCACTGTCCNTGAGTTTGGGGTGCTGCCTCCAGCNCACANGGNGGTGAGTTTTCCTATGAGCTGGCNAAGGC----CTGCCCATGTGCTGGTCGTCCTGGCCGGGGGTTCAGGCTCCNACCCTCCCACTTCCCTNTGCATTCACTGGCCCAGCTGCTGGAGTAGTGACTGCTG--TGCACCTCTCATCAGATGCAGATTGGGGGAAATCAATGGGGTTAGGTCACCAAGGGGGAG------------------ACAGGGTTGGTGGCAAAGCCCCNTTGTTGCAGG--TCCTGCCCAGTAGGAGCCCCAGGGAAAGCAGGCTCCTCCTGGCTGCCGTGCATTTGAAGGATAAGGAGGCAGCTGTCCCTT---CCAGAATGCACTTAGGGATCTCAGTCTCTTCATGGGGGGAGG----------AAAGGCCACTCTCAGCTGCAATCTGAGGTTCAACACAGCCTCAAAATGAAGCAGCCTCCTTCACCTGCNAGGNGTGAAGNGTGGCAGTTGGCGCCTGCCACCG------------------------CCAGCCATCTCTGCAAGTTGAAAATCCCTGGGAGGTTCCTGAGACACAAATCAATGGTGATGAAGACTAAAACTGGAGCTGTGAACCCAGAGAGGACCGGGCAGCTGAGGAGTCATCCAGGGC--------------AGCCCAGCCA-------GGCACGTGTCTGGC--------CCCAGCTGCCCAGCACCCGGCCTGCCAAAG--------------------------------------ACTCACACCCANCCCCAGCCC s panTro1.chr19 78941903 1378 + 82489036 TAGCACCAAGTTCCAGGAGCCCGGGAAGG---------GAAGGATA-----------GAGGCAcacagaaggcttcctggaggaggtgacatttgaatag--ggttctgagggatgtgc---aggatttcaaacggaggaaagaaccaggcccatgtcccacacagaggTCCTGGGCCAACGCTGCCCAGGGTGAAGAAGATCAAACGGTGACCAGATGCA-CATGGGGACGGGG-AAGCCATGTAGGGATGCTGCCAGCCAGAAGTTCactcagttattcaacaa-acatttattggctgcg-aggactgagctggaggcactgaggctacaAACTGTG-TGACTCAGT-GCAGCAGCAAGGCTGAGTGGTGAGGA-GGGTGCAGGGCACCAG-GGGACTGAAGACAGAAGCCAGATGTCCAGGAGCCTTCCAGCGGGCAGCTGCTGGAGACCCTGGACAAG--AGGTGAGATGGGGCTAGCCTGTGCCTTCAGAGGAAGACGGTGGCAGCTACTTGCTCATCTGGTGGGTCCCCAGGAGGGAATTCAAACATTGTCCCCCATCCTCACGACAAGTACACTCAGGGTGACCAGAGAAACTTGGGTCACAGTGGCCAGTGGGCTCCTGGGGAGAAGCTGTGGGGACTGCAGGTGACTTCTCTGCCCATATGAATTATTGACACACCCAGCCAGGTCCACTGG-GTT-CCTACAACCTGTGCTGTGGCTGCCTCTTGCTCATCACTGTCC-TGAGTTTGGGGTGCTGCCTCCAGC-CACAGGG--GTGAGTTTTCCTATGAGCTGGC-AAGGC----CTGCCCATGTGCTGGTCGTCCTGGCCGGGGGTTTGGGCTCC-ACCCTCCCACTTCCCTCTGCATTCACTGGCCCGGCTGCTGGAGTATTGACTGCTG--TGCACATCTCATCAGATGCAGATTGGGGGAAATCAATGGGGTTAAGTCACCAAGGGGGAG------------------ACAGCGTTGGTGGCAAAGCCCC-TTGTTGCAGG--TCCTGCCCAGTAGGAGCCCCAGGGAAAGCAGGCTCCTCCTGGCTGGCGTGCATTTGAAGGATAAGGAGGCAGCTGTCCCTT---CCAGCATGCACTTAGGGATCTCAGTCTCTTCATGGGGGGAGG----------AAAGGCCACTCTCAGCTGCAATCTGAGGTTCAACACAGCCTCAAAATGAAGCAGCCTCCTTCACCTGCA--GGGTGAAGGG-GGCAGTTGGCGCCTGCCACCG------------------------CCAGCCATCTCTGCAAGTTGAAAATCCCTGGGAGGTTCCTGAGACACAAATCAATGGTGATGAAGACTAAAACTGGAGCTGTGAACCCAGAGAGGACCGGGCAGCTGAGGAGTCATCCAGGGC--------------AGCCCAGCCA-------GGCACGTGTCTGGC--------CCCAGCTGCCCAGCACCCGGCCTGCCAAAG--------------------------------------ACTCACACCCA-CCCCAGCCC s mm5.chr11 118622487 1070 + 121648857 CAACAGAAAGTTCCAGGTGCTGTGGGTTGCAGAACCTTGAGGGAGG-CTCTCAGCTACCTGCA-GTAGATGGATCCCCAGAGGGAGTGAGGAGCTGACAGGAGATTCTAAAGGATGCAC---AGGATGTCAATCATAGG--ATAAGCAGGTCC-CACCCCACCTAGAGGTCCTGGACCAAGAAGGCTCAGAGC---AAGGATCAGACGGTGACAGGACACAGCATGG---------AAGCCTAGTGTGGCCAC-----ACCAG-AGTTCACTTAGTCACTTGACAA-ACATGTCTTACTGCCA-GAGCCTGAGCATGAGGTGCAGAGACTCTGTGCTGAG-CGGTGGAGGAGCAGGAGGGAGGCCGTGTGTTGTGAA----TACA---CAC-------ACTGCAGACTAAAGCCACAT------------------------------------------------------------------------TGCAGAGCACAGCAGGAACCACTA-------------------CCCAGGAGTG------------------------------------------------------------------------CAATGATCTTCT---------------------------------------------------------------CATGTCCCCCGTCACT-C----------------------------CTCAGCACC-----TGCTTTTGGAGTTCT---TCCA---CACCGGG--GCTCCGTTTCTTGTTACCCACCCCAGGCACAACTCCCCAGCCTGTGGGCAGCCATACCAG----------------------------------------------------------ACTGATCACGG--TGCGCAGCTCCTAAGG-GCAGCTTGGAGGGAGTTAGTGGGGTGAGGTCCCCAGGAGGTGGCTGTCCCCCAACCTCCACACAGACTGGGTGGTAACCTCCCCACGACATCAGCTTCCTGCTCCATGGACCCTGCAGCAGCAACA-------CCTGCCTGGCTCGAATTT--------AAGCGTAAATCACATCAA---CCAGAATGCACTTGGGGATCTT-------------------------------GCGTTCACTCTCAGCTGCCATTCACGGTTC----------CAGAAGGCGG--------------TGCT-------------GGAGGTGACTACCCCCAACCA------------------------GGTGCCATTACTGCACATGGAACATTCCCAGGCGGTTCCTGAGACACATAC--GTGCTAGCAAAGACTAGCTTCAGGACTATGAGCAAGGAGAGAACCAAGCAGGT-AAGAGCAACCCAGAACTGGCTGAGAGCATGCGCCCAGCCACTGGCCTGCCACAGATCATGCTTGCCCCGCCCAGCTGCACCGC-TGCTGTCTGTGAAGGTATGGGAGACACACACATACGACATATGTACACAGCATACACACACATACACACAGCAC s canFam1.chr18 28837906 1066 + 66173745 CAGCGCCTAGCCC---GAGCTCAGGGagg---------gaaggaccacttctcgccaggggca-acggaagccttcctggcggagcagacatttgagtgg--ggttctgaaggatgtgtaggagGATTTCCGAGAGTGGAAACATCCAGGCACGTGCCTCACACAGAAGTCCTGAGCCAAGG--GACAGGGAGGGCGAAGCCCAAATAGTGA----------CGGTGAGAGGGGA-TAGC-----------ACAGCCCACCAGGAATTCACTCAGTCATTCAACAA-TCATCAGTCGGCTGCACGGGTCTGGGTTCAAGGCACTGAGACTACAGACTGAGCCGAGTGGGG-GGGGTAACAAGGCTGAGCGTC---------TCCAGGGCAGGAGTGGTTCTGAAGAT-GAAGCCAGACTGCAAAGAGCCCTCCGGCAGGCAACTGCTGGGGACACTGGACACG--GGGTGAGCTGGGGTCGAACTGAGCTTGC-----------------------------------------------GTGAATT-----ATTTTTCGC-ATCCACCTGA----------------------------------------AGCCGATGGGGGTCCCGTGA--------------------------------------------------------------TCCAC----GCT-----------------TGGCTGACCATTGCTCATGACCATCC-TGCCTTTGGGGTGCAGC-TCTGGC-TGGACGG-------------------------TAGGC---TCTCCCTGTATGTT------------CAGGCACGTGGCCCCC-CCGCCCCTGCTTCCTTCG--------------------------CAGGACTGCCGCACACACATCCCATCAGACGCAGACTGGGGG-AATCGACAGGGTTAGGTCA-CAGGGGCCAG----------------------------TGGC---CTTCC-------------TCCAACCCAA-AGGGGCCGCGG-----GCAGGCACTGCCTG-CTGACTTGCATTTTAAGGATAAAGAGGCAGCTGTCCCCTTGCCCAGAAGGCATTTAGGGATTTTCATCTTTTCGTGGGGGGGGGGGGGGGGAGTAAAGGCCTGTCTCAGCCGC--TGCGTGATTCAATGCAGTCTCACAGGGAAGCGGCCTCCTTCGGGGACC--------CAGGTCACAGTTGGGACTCACCACAGCTGGCCACTCACCATGCAATGTGTCCAGCCAGCTCTGCAAGTTGAA-ATGCTCGGGAGGCTCCAGATCCCCAGTC--CTGGTGATGAGGACCAGG--------------------------TGGGCGG---GGGAGGCGTCC---GC--------------TGCCTGGCC------------------------------CCCAG--GCCCCGC--------TGCCAGAG--------------------------------------ACACACAGATG-CTCTAGCCC a score=2048.0 s hg17.chr17_random 1575916 15 + 2618010 NAGCAGGAGCCACTT s panTro1.chr19 78943281 14 + 82489036 -AGCAGGAGCCACTT s canFam1.chr18 28838972 13 + 66173745 --CCAGGCGCCTCTT a score=122331.0 s hg17.chr17_random 1575931 668 + 2618010 CAGTCCCTGAAACTCCNAGAAGACACACGT-GCGCACGCGCACACACGCTCAT-CCCATTATCATCTTGCTGCACCGGCTGAAATTTATTAGCAGCAGA-AGCGTCAAGGCCCTTTCCNCAGANGCTTTCATGNCTTTTCTACAAAGTAATCTTCCACGGGTGCTTCTGTATTCCTTCCCTGTGCGGTAGAGCAACATCTCAGCCGCCAGACCCTCTGAATGCTAATTTATTTCAGGAGTCGGAGCAGTTGGCTCCAGGAGGTCCTCCTGGCAGGGAAGGGAGGGAATAAAAGGTATTTCTCTCTCCAACTCTCCAACTGCAGGCTCCAGCTG-----CCCCCACGGTGNTTTACCTCCCTTCTCACCCCACCGGGAGGG--AGCAGAGCAGGGTGTCCATGGGGGCTGCAGGGGGGTTGGTGGGGGAC-------AGTA--GCCCAGCCCACACCCACA-GCTCCCTCCTCNCNATCCAGGCTCAGAGCCATGTTCCCAATGTGAGGCCCCTCGGGAATGAAGCAGANCACAAATGGCCATGNCTTTCTGGGCGAGACAGCTGCGCCAGCCTCATTGGGGGCCTGGAAATTGCTTCTGTCTCAGTGGCATCCGGAGAGCCATTT-CAGAGGATGCTGACAGGC-CAC-ATGCATCCTCCATGGAGGGGAGAGNGCACGGTCCTGAGTCAT s panTro1.chr19 78943295 665 + 82489036 CAGTCCCTGAAACTCC-AGAAGACACACGT-GCGCACGCGCACACACGCTCAT-CCCATTATTATCTTGCTGCACCGGCTGAAATTTATTAGCAGCAGA-AGCGTCAAGGCCCTTTCC-CAGA-GCTTTCATG-CTTTTCTACAAAGTAATCTTCCACGGGTGCTTCTGTATTCCTTCCCTGTGCAGTAGAGCAACATCTCAGCCGCCAGACCCTCTGAATGCTAATTTATTTCAGGAGTCGGAGCAGTTGGCTCCAGGAGGTCCTCCTGGCAGGGAAGGGAGGGAAGAAAAGGTATTTCTCTCTCCAACTCTCCAACTGCAGGCTCCAGCTG-----CCCCCACAGTG-TTTACCTCCCTTCTCAACCCACCGGGAGGG--AGCAGAGCAGGGTGTCCATGGGGGCTGCAGGGGGGTTGGTGGGGGACGGGGGACAGTA--GCCCAGCCCACACCCGCA-GCTCCCTCCTCC--AGCCAGGCTCAGAGCCATGTTCCCAATGTGAGGCCCCTCGGGAATGAAGCAGA-CACAAATGGCCATG-CTTTCTGGGCGAGACAGCTGCGCCAGCCTCATTGGGGGCCTGGAAATTGCTTCTGTCTCAGTGGCATCCGGAGAGCCATTT-CAGAGGATGCTGACAGGC-CAC-ATGCATCCTCCATGGAGGGGAGAG-GCACGGTCCTGAGTCAT s mm5.chr11 118623690 580 + 121648857 CATTCACTCACATAC--ACAATACACACACAGCACACACTTACAGACGCATACACACACCATCATCTGGCTGCAGCTACTGAACCACGTTAGCGGCAGGCAGAGTGGAGATCTTTCCT---GA-GCAGTCATG-ATTTCCTACAAAGCCACCTTCC-CTGGCACTCCTG--GCCCTTCCCTGTGCA------CACAGGCCCAG-CACTGAAGTTCCTGCACGCTGATGTGTTTTGGGAGGCGAAGCA-----------GGGGTCCTCCCAGCAGGGAGGAAAGAAGAAGAAAAGTGGTTTTGTCTCTGAGCTTTC-ACCACAAGCTCCATCTGCCCCACCCCCATGGTG-TTCGCCTGCC-----------ACAGGAGGG--AGCAGAGTGGGAT-CCCAGAG-----GCAGAG----------------------AGCA--------TCCGCAACCACA-GCTCCCTTCTTCC-AGTCAG--------------TCCTAAAGTG-GACCCCTTGGGGATAAAATGCC-CATAAATGCCGATT-TCTCCCAGGCAGGACAGCTGCACAGGCCCCCTC-AGGGTCTGGAAAATACAAGTGTGT-GGTGGCATCCACAGAGTGACCTGTGGAGGGTGCTGCCAGGTGCAC-ACACATCC--------AGGTAGA--GAATAAGCCTGAGTCAC s canFam1.chr18 28838985 635 + 66173745 CAGCCCCTGGAGCCCT----GGACACAGGC-GCATATG----------------CACCTCGTTATCTTGCCGCACCCACTGAAATTTGTCAGCAGCCAG-AGGGCTAAGGCCCTGTCT--GGG-GCGTTCATG-TTCTTCTGCAAAGGACTCTCCCATGGGCACGCCTGTGCCCCTTGCCC-TGCAGAAGAGCGGTGGCTTGGAGGCCAGCCCCTCGGGCTGCTCATTTATCCCAGGAGCTGGGGCAGTCGGCTCCCGGAGGTCCTCCTGGCTGGAAGG---GGGGAAGGAAGGTGG--CCCTCTCCGGCTCTGT-GCTGCAGGACCCAGCTG-----CTCCCCGCACG-TTCA-CTGCCTTCTCAGCCCATCGGGAGGGCCAGCGGGCCTGCGT-------GGAGCAGGTGGGGCCTCCCCGGGGGACATGGGGGACCAAGGGCCAGCCCATGCCCGCAGGCTGCCTTCTCCC-GCCCAGCCCCGGAGCCCTCGCCCCCGCCCC-CACCCCCCAGGAACAAAAAGGA-CACTCCTGAGAACA-CTTCCT-GCTGAGACAGCTGGGCCGGCCACATTGGGTGCCTGGAAATGGCTTCTGTCTTGGTGGCATCCAGGGAGCCGGTT-CCGAGGACGCTGACAGGC-CACGGTGCGTCCTCTGGGTGGGGAAGAG-GCCCAGCCCTG-GTCAC a score=0.0 s hg17.chr17_random 1576599 13 + 2618010 GGAGGAGCACAGA a score=1577.0 s hg17.chr17_random 1576599 11 + 2618010 GGAGGAGCACA s panTro1.chr19 78943960 11 + 82489036 GGAGGAGCATA s mm5.chr11 118624270 11 + 121648857 AGGTGAGCCTA a score=191.0 s hg17.chr17_random 1576610 2 + 2618010 GA s panTro1.chr19 78943971 2 + 82489036 GA a score=6975.0 s hg17.chr17_random 1576612 104 + 2618010 CAGACTGACACTGCATAGGTCTGGGGACTATGGAATCGAGTCAGAGGCANGGTCAGCCCCCAGAGCCGCTGCTCCACCACTCAAAGGCTCCACACATCTCCCCT s panTro1.chr19 78943973 103 + 82489036 CAGACTGACACTGCATAGGTCTGGGGACTATGGCATCGAGTCAGAGGCA-GGTCAGCCCCCAGAGCCGCTGCTCCACCACTCAAAGGCTCCACACATCTCCCCT s canFam1.chr18 28839620 38 + 66173745 CAGCCCCACA----------------------------GGTCAGAGATGGGGT--------------------------------------GCAGATTCCCCCT a score=41783.0 s hg17.chr17_random 1576716 411 + 2618010 GGCAAGTGGAGATACCCA---ATGGGCCAG--CCTCAGGCCCCTCCCAGCACCAGGCCCTGCTGGGTCGTGGGT----CCACGGT-----------GCCCCTGGTGGGAGACACGCAGAGCACACAAACGAAACAAGTAATGATGTCATTGTAGGTGCCTGTGTGGGCTCTGCAGAGAAGAGAAGTCACTTCTGGTGGAAGTAACTGGCCACCG------CAGGGCTGC-TGGGCATCTTTAGGTTGTCGGGAGGCCTAAGCAGAGGACACTGGAGTTGAGACCTAAATGACAGGGANGGCACAGCCACCAGCATTTGNTGAGTGAAGCAGAGCCCCCAGGAGACTGTGTGTGTGCacctgcatgcacgcatacacaggcctagatgcccacatgcttatg-----------caaatgcacagacacacatggatgcacacatacacct s panTro1.chr19 78944076 409 + 82489036 GGCAAGTGGAGATGCCCA---ATGGGCCAG--CCTCAGGCCCCTCCCAGCACCAGGCCCTGCTGGGTCGTGGGG----CCACGGT-----------GCCCCTGGTGGGAGACACGCAGAGCACACAAACAAAACAAGTAATGATGTCATTGTAGGTGCCTGTGTGGGCTCTGCAGAGAAGAGAAGTCACTTCTGGTGGAAGTAACTGGCCACCG------CAGGGCTGC-TGGGCATCTTTAGGTTGTCGGGAGGCCTAAGCAGAGGACACTGGAGTTGAGACCTAAATGACAGGGA-GGCACAGCCACCAGCATTTG-TGAGTGAAGCAGAGCCCCCAGGAGACTGTGTGTGTGCACCTGCACGCATGCATACAAAGGCCTAGATGCCCACATGCATATG-----------CAAATGCACAGATAAAAGGGGATGCACACATACACCT s mm5.chr11 118624339 329 + 121648857 AGCAAAGGAGGCTGCCCA---TCAGCT-----CCCCAGTCCCATCT--GCCCCAGGCCCTGCT--------------------GT-----------GTCCTTGGGGTGA----------------AGATGCAAT-AGTACCGCTAACAACATAGGGTC----------------------AGAGGTCACCTCAAACACCTGCAAGTGTCCACAGGTGGCCCGAGGGTGA-GAGACACCTGAACACT-----GGAGCCTGAGCAGCGACCACGTGTGCTGACACCTCCAC-ACAGAGG-AGCACAGCC------------TG------------------GGAGCGTAGGTCTGCCGCCCAGCACCCAGCCTCTTACAATCCCAGCTCCAGGGATGCCTCTGGACACCACTGTCACTTGGACTCATGCAGCAGGACACACACACACAC-- s canFam1.chr18 28839660 389 + 66173745 GGCCAGGGAGGAAGCCCATGCACAGCCCGGAACCTCGGG--------AGAGCCAGGCCTTGCTCGGTCGCTGGGCTTCCCGCCGTGAACACCCCCAGCCCCTGGGGAGA----CACAGGGCACGTCGGCAATAGAAGCCGTAATGTCACCGCAGGTGCCTCTGAGCGCTGTGAAGGGAAAACAGGATGCTGTGGTAGGAGGTGACAGCCGAGGG------TGGAGACGCGTCAGCATCTGCGAGCGGTCGGGAGGAGTGAGCAGGGGACAGCGGAGCTGACACCCGAAG-GTGGGAG-GGCACACCCACCAGGCATCG---------GCGGAGCCCCG-GGAGGCTGG--CTGCGCACCTGCACACACATGTGGACA--------TGGACACAGAGTTGTG-----------CA----CACACACACAGAGGGGTACACACCCT----- a score=0.0 s hg17.chr17_random 1577127 46 + 2618010 acatgcagtgcatgcgtagatgctcacatagnacacacagacacan a score=999.0 s hg17.chr17_random 1577127 15 + 2618010 acatgcagtgcatgc s panTro1.chr19 78944485 15 + 82489036 ACACGCAGTGCATGC s mm5.chr11 118624668 6 + 121648857 ACATGC--------- a score=535.0 s hg17.chr17_random 1577142 31 + 2618010 gtagatgctcacatagnacacacagacacan s mm5.chr11 118624674 29 + 121648857 AGACATACAGACATACAAAACACAGACAC-- a score=7071.0 s hg17.chr17_random 1577173 92 + 2618010 catggatgcacatgtacctatacacatgcaaa--tacataGAGATAGGTGTATCAGCAcatatacaggtacacatatatctacaagtnacgtag s mm5.chr11 118624703 86 + 121648857 -----ACACATATACACTCACACACATGCATACTCACACATACACACATTCATACACACATATACACACATACACATTCACACAA---AGACAC s canFam1.chr18 28840049 92 + 66173745 CATGGATGcacacatacatatacacacgcaca--cacagatgtagacatgcataaaccaatatacacacgcgcacatgcacacacacaACAAAG a score=0.0 s hg17.chr17_random 1577265 10 + 2618010 atagaaactc a score=385.0 s hg17.chr17_random 1577265 10 + 2618010 atagaaactc s mm5.chr11 118624789 10 + 121648857 ATGCACACTC a score=18485.0 s hg17.chr17_random 1577275 126 + 2618010 acacatatatgtacttgcacacatacacacantatgcacataaacacantacacacattgatagatgaatgcatatgcatgtacacaggcnacacacatagatggacacatacacataaatgtaca s panTro1.chr19 78944630 123 + 82489036 ACACATATATGTACTGGcacacatacacaca-tatgcacataaacaca-tacacacatTGATAGATGAatgcatatgcatgtacacaggc-acacacatagatggacacatacacataaatgtaca s mm5.chr11 118624799 109 + 121648857 ACACAGACATACACT--CACACATACACACA-TTCACACACGTACACA-CAGACAC------------ATGCAGATACACTCTCACACAG-ACGTGCACACATAAAGACACACACACTAATGCATA s canFam1.chr18 28840141 94 + 66173745 ACATGCATATGCACATGGATGGACAGTCATG-TCTG-------Gtaca-tatacaa------------acacatatgcac-----------acgcacacaggtgtgcacattcacagacatatatg a score=48653.0 s hg17.chr17_random 1577401 423 + 2618010 taGGTGCANTATNGTGTTTATACAAACATGAACACACATGTATATCTCta------cacatagatatatgcatacnttttacatatacacacatgcatgcacatacatatacatgtacacatgcatatacacacccacnaaatgcatgtataggtgcaaatac----acatgcgtgcatattacatgtagatacaattgcatatatacgtattcatacatgtgcgtgtcacacatacatgtaccatacaCaggcacacatatgaagggacttttctacagcgatttgatgtcgcaccacaaccgaggnagctagttaagccatctctgtgaggagcttgaagtccacaagggagactgtgggaaagggacagtgatgtcaggtggagtgtgggaggtgggcgagagtgaggaacnccaggtacaggctggagc s panTro1.chr19 78944753 421 + 82489036 taggtgca-tat-gtgtttatacaaacatgaacacacatgcatatctcta------cacatagatatatgcatac-ttttacatatacacacatgcatgcacatacatatacatgtacacatgcatatacacacccac-aaatgcatgtataggtgcaaatacgtacacatgcgtacatattacatgtagatacaattgcatatatacgtattcataCATGTACGTGTCACACATACATGTACCATACACAGGCACACATATGaagggatttttctacagcgatttgatgtcgcaccacaactgagg-agctggttaagccatctctgtgaggagcttgaagtccacaagggagactgtgggaaagggacagtgatgtcaggtggagtgtgggaggtgggcgagagtgaggaac-ccaggtacgggctggagc s canFam1.chr18 28840235 364 + 66173745 cacatgca---t-gtgggtacacaaacagaaatacacgtacatatacatatgcatgcacatatagatatgcaCACAGTTCACA-----ATATATATGTGCAAATGTATATA-ACGTGCAAATGTGTGCACA-------------CATGTGTGCGCGCAGGTAT----ACGTGTGTGTA---CACATCTACATGCTCCAACACACA--------CATGCATATGCCTG-CATACACAC--------TGTACATACACTCTTGCAGGGGGATTTTT-TACAGGGATTTGCCTCCACACCAGGACTGTAGGAGCCTG-TAAGCTGTCCC--TGAGGAGGGCGAGGTCCACAGGGCAGGTGGCCGG----------------CAGGTGAGACATGAAAGGGGGTGGAGAGT-ATGACC-CCCGGCGTGAGCTGGAAC a score=237356.0 s hg17.chr17_random 1577824 2765 + 2618010 ccacnaanggatgggctggggccatggctgtccttgctgcctctgagcatggtggtgtgggcatcctgcagaagccaggccctcgctcacagagccaaacacccacatctggcttgggagcaggctgtgctggaggaggatcangggttggaggaggatcagggttggagcagctgcagcgcagccactgtctcTGCTGTTTgggggccaagctgtgcggcagggccagcacttaggaggtttcaccctttacccagcaccaggtggaaaggatggggggatacagaccacaattgctgcagggaaacagtaagaagggcttgggctctggaaatgtttgagaggaagagcaaacanggacctgtaggtgggantagggnntggggttggaagagagaaaccccatgtagctctgtagctctggcccagcacactgggtggnctgngtatttccactcagtcccccaaganggagaggtttggacagaaaagatctgagaaggaTAGGAAGGGGGAAGAGAAATTAGGCTTCACCTTGCCNCCCAAAANTGTCCCAGCTCCCAGGTATTCNCTGGGGTGCTACCAAAAGACCAACCNTTTCAGTGAGGCCAAGAGACAGAGAAGCCATGGGGCTGTCTGGGCCTGATTCCAGTCCNTCCCCCAATCCACACCTTGGAGCCCTCATGGAGCTCACGGTCAAACCAGACTCNTACTGCCAGCCAAGTNGGTAGTGGGCTCTTCTCGCAGTCCTGGGGAAAACACACAGG-AGGGATTAGTGGCATCTGTAACTGGGACTTCTCCACTGTTCTACAGAGAGAAGTTGGAAAATGCTTCTAGAGGAAGCACAGGGAGTGATTGTGGTTGGTGGGAANTAGGTTGGGGAAGACAACAGGTAGAATGGCTGGTGCCCAATCTGACAGCAGCATCAGCAGATTTGCACGAGCTACAGATGTTGGAATTACTTTAAAAATGCATagacttgaaaaagaacatataaataaaaatttcagaactgaaaaatgtactgactgaaatagaggactccgtggataagttttaaagcaattagacataactgaagagagaattagtacactgaaaagtaggtctgcagaaaacatgcagagtgaaacctggagaatccaaagggcagaaaagaaggaaaaaaacaacaaaacagaagaagaacaggagacccacagacacagtngagaagggctggcatgaagctgaattccaggagggagagagcccataggcaaaagcaaaattgaagaagcaaccactgagaatttcctataacttatgaaaaacatcaagnccatgttttcaagaaaccaaacaaaccccaagaaggacaaaccnaaaagaaacccacacccagacacaagatagcaaaactGAAGAAGAGAGACCATGCCATCCACCCACCATCATTCAAGTGGCTGAGGCAAGACCTGAACCCAAAAATAAAAGGTAGTTTCATCAGAAGAATAGTGGGAAGCTCCTAAAAATCAAGGAGAAAGCTGGGGGAACAGATTCAGAGAGGGATAGCAACGAGGTGACCCCAGGAGACTCTAGTGATGACCTTGGCCNTTATCTAATCCCCNCCNAGGTATAAGAGAAGGGTCCCTGACAGGGGGGCATGCAGCAGGGCCCCTCTGGCTTCTATAGGGGAAGGGCAGGTGTCTGCCTCCCTGTCCCTTGTACACCACNGCTTTCCAAGACTCCCCAGNCAGTGGAGCATGGGCCTCTAGTGATGCAGAATTTTTGGTTTTACTCAATTGCTACCTCAGAGCCCAGGGCACCCCAAGACAGGGCTTGGTCATGTGGGTTCAAGTGGAACCTCATGCAGTCCCCAGAAGCACTGATCCAGCCACACTCNAAGCACTGTTGTGGCTCTAACCAGNCATCCCNACGTCCCCTACTTGCTAAGAATGTTATTTCAGGGGTCCCACTGCCCTTCTTGCAAGCTGCCTTCCAGCCCCCTCCAAGCTCAGCTCATCAATATGTCAACATCTGAACCCCACTAGGGAGACGTTTCCCCTGGGGTTCCCAGGCTGCACAGAAGTCAAAGGATGGGCCCGGCCTCCTGGCAGAAGGATTCCACAGCAGACAGTGTGGCTCCCTCATCCNACAAGCTTGGCCACAGAGGCGTGGCCAGTGCCNTCTTGGGTCAGCTTTGACCCAGCCATGACATCTCACCCCATGAGACTTAGGGCTGCAGGAGGAATTTGAGACCCTAGTACAAGCCAAACCTGACTCTTCTGGGCTCATGGACTGGACAGGCCTCAGGCAGAACGTCCCCTGGACACCAGTGGGCAGGGCTGGGGCAGCAGTGACTTACACTGGATTCAGGTCCNTCAAACTCACAGCATAGGGGCAAGAACACATCTCTTCTGTGGCTCCACCCACGTCGCTGTCTTTGGCACCTGCTTCCCTGAGCAGCAGACACTGTGCCTGCCTGTCCTGTCCCCTCACCCTTGCAANTGCcttctgaatgccagcacctgtgcttctttgtctgagggctttctctggcttttcgagccactttgtccccatcctccccaccttgcatcccaggcagcaggctggaagcaccangggtgttcacatcccaagggagcagccctcagaggctggtagggctggtgtgggaactcccagctcctttgcctcctgatgggataaccccaagacataagccacactccggcggctgtccggataatcctcctggataggctgccctccccggcccg s panTro1.chr19 78945174 2720 + 82489036 ccacaa--ggatgggctggggccatggctgtccttgctgcctctgagcatggtggtgtgggcatcctgcagaagccaggcccttgctcacagagcccaacacccacatctggcttgggagcaggctgtgctggaggaggatca-gggttggagaaggatcagggttggagcagctgcagcacagccactgcctcTGCTGTTTgggggccaagctgtgcggcagggccagcacttcggaggtttcaccctttacccagcaccaggtggaaaggatggggggatacagaccacaattgctgcagggaaacagtaagaagggcttgggctctggaaatgtttgagaggaagagcaaaca-ggacctgtaggtggga-taggg--tggggttggaagagagaaaccccatgtagctctgtagctctggcccagcacactgggtgg-ctg-gtatttccactcagtcccccaaga-ggagaggtttggacagaaaagatctgagaaggaTAGGAAGGGGGAAGAGAAATTAGGCTTCACCTTGCCCCC--AAAATGTCCCAGCTCCCAGGTATTC-CTGGGGTGCTACCAAAAGACCAACC-TTTCAGTGAGGCCAAGAGACAGAGAAGCCATGGGGCTGTCTGGGCCTGATTCCAGTCC-TCCCCCATTCCACACCTTGGAGCCCTCATGGAGCTCATGGTCAAACCAGACTC-TACTGCCAGCCAAGT-GGTAGTGGGCTCTTCTCGCAGTCCTGGGGAAAACACACAGGGAGGGATGAGTGGCATCTGTAACTGGGACTTCTCCACTGTTTTACAGAGAGAAGTTGGAAAATGCTTCTGGAGGAAGCACAGGGAGTGATTGTGGTTGGTGGGAA-TGGGTTGGGGAAGACAACAGGTAGAATGGCTGGTGCCCAATCTGACAGCA---TCAGCAGACTTGCACGAGCTACAGATGTTGGAATTACTTTAAAAATGCATagacttgaaaaagaacatataaataaaaatttcagaactgaaaaatgtactgactgaaatagaggactccgtggataagttttaaagcaattagacataactgaagagagaattagtacactggaaagtaggtctgcagaaaatatgcagagtgaaacctggagaatccaaagggcagaaaagaaggaaaaaaacaa---aacagaagaagaacaggagacccacagacacagt-gagaagggctggcatgaagcggaattccaggagggagagagcccataggcaaaagcaaaattgaagaagcaaccactgagaatttcctataacttatgaaagacatcaag-ccatgttttcaagaaaccaaacaaaccccaagaaggacaaacc-aaaagaaacccacacccagacacaagatagcaaaactGAAGAAGAGAGACCATGCCGTCCACCCAACATCATTCAAGTGGCTGAGGCAAGACCTGAACCCAAAAATAAAAGGTAGTTTCAACAGAAGAATAGTGGGAAGTTCCTAAAAATCAAGGAGAAACCTGGGGGAACAGATTCAGAGAGGGATAGCAACGAGGTGACCCCAGGAGACTCTAGTGAT-ACCTTGGCCAT-ATCTAATCCCCCC--AGGTATAAGAGAAGGGTCCCTGACAGGGGGGCATGCAGCAGGGCCCCTCTGGCTTCTATAGGGGAAGGGCAGGTGTCTGCCTCCCTGTCCCTTGTACACCACA-CTTTCCAAGACTCCTCAG-CAGTGGAGCATGGGCCTCTAGTGATGCAGAATTTTTGGTTTTACTCGATTGCTACCTCAGAGCCCAGGGCACCCCAAGACAGGGCTTGGTCATGTGGGTTCAAGTGGAACCTCATGCAGTCCCCAGAAGCACTGATCCAGCCACACTC-AAGCACTGTTGTGGCTCTAACCAG-CATCCC-ACGTCCCCTACTTGCTAAGAATGTTATTTCAGGGGTCCCACTGCCCTTCTTGCAAGCTGCCTTCCAGCCCCCTCCAAGCTCA-----TCAATATGTCAACATCTGAACCTCACTAGGGAGACGTTTCCCCTGGGGTCCCCAGTCTGCACAGAAGTCAAATGATGGGCCCGGCCTCCTGGCAGGAGGATTCCACAGCAGACAGTGTGGCTCCCTCATCC-ACAAGCTTGGCCACAGAGGCGTGGCCAGTGCC-TCTTGGGTCAGCTTTGACCCAGCCATGACATCTCACCCCATGAGACTTAGGGCTGCAGGAGGAATTTGAGACCCTAGTACAAGCCAAACCTGACTCTTCTGGGCTCATGGACTGGACAGGCCTCAGGCAGAAGGTCCCCTGGACACCAGTGGGCAGGGCTGAGGCAGCAGTGACTCACACTGGATTCAGGTCC-TCAAGCTCATAGCATAGGGGCAAGAACACATCTCTTCTGTGGCTCCACCCACGTCGCTGTCTTTGGCACCTGCTTCCCTGAgcagcagacactgtgcctgcctgtcctgtcccctcacccttacga-tgccttctgaatgccagcacctgtgcttctttgtctgagggctttctctggcttttagagccactttgtccccatcctccccaccttgcatcccaggcagcaggctggaagcacca-gggtgttcacaccccaagggagcagccctcagaggctggtagggctggtgtgggaacacccagctcctttgcctcctggtgggataaccccaagacataagccacactCCAGCAGCTGTCCGGATAATCCTCCTGGATAGGCTGCCCTCCCCGGCCCG a score=90184.0 s hg17.chr17_random 1581258 1028 + 2618010 tggtggcttatgcctgtaatcccagcactttgggaggcctaggtgggtggatcacctgaggtcacgagttcaagattagcctggccaacatggtgaaatcccgtctctactcaaaatataaaaattagctggctgtgctggtgtgtgcctgtaatcccagccacctgggaggctgaggcaggcgaatcacttgaagctgggaggcggaggttgcagtgagctgagatggcaccactgcaccctagcctgggcaatagaaggagactgtatccaaaaaaaaaaaaaattgaactgacattcacacatcatctgtacacaaatgctcatagcagcattagtcacaatagnccaaacagtgacagcaaatgtctatcaccaaacaaatgggtaaancacaatgaggntccnatccatacaacagagtctcattcagccatggagcagaatgaagcactgatgcatgctacaantgtgggcgaacctgaaactttcacactaagtgaaagaatgcagcggacccaaaaggccacacgtcacatgattccactgtatgaaatgtccagataggcaaagccacagagaaaggagacgggtggctgccgggggatggagagagagaggagagggagtgactgcttnaatgatgatggggtttccattcggggtgataagttttggaactagatagaggcgacggttaatgacatcgtgaat-tacagaaagccactgaattgnttcacgttaaaatgggttacatgttacatgatgtgaatgttgcctcaTAAAAGAAGTCCATCTGTATCACCAATTTAAATACATCTTCCTGGTAGTGCCTATTAAAATTATATTGACTTCGATCTTTTTATTATGAAAATAAACTGCACTCGGGTGGAAAAAGAAAGCAAACTTCTGCCACACTGGATCCTCGGAGGGAGGGGGCAGTTGCAAACCCAGGGCAGGAGGACGGCACACAAGCCATGAACGGCAGCCGTCCGGGGGCATCACCACGGCGCCTCACCATCCCTTCT s panTro1.chr19 78948556 1020 + 82489036 TggtggctcatgcctgtaatcccagcactttgggaggcctaggtgggtggatcacctgaggtcacgagttcaagattagcccggccaacatggtgaaatcccgtctctactcaaaatataaaaattagctggctgtgctggtgtgtgcctgtaatcccagccacctgggaggctgaggcaggcgaatcacttgaagctgggaggtggaggttgcagtgagctgagatggcaccactgcaccccagcctgggcaatagaaggagactctatcccaaaaaaaaaaaaaTTGaactgacattcacacatcatctgtacacaaatgctcatagcagcattagtcacaatag-ccaaacagtgacagcaaatgtctatcaccaaacaaatggataaa-cacagtgaggt--ccatccatacaacagagtctcattcagccatggagcagaatgaagcactgatgcatgctacaa-tgtgggcgaacctgaaactttcacactaagtgaaagaatgcagcggacccaaaaggccacacgtcacatgattccactgtatgaaatgtccagataggcaaagccacagagaaaggagacgggtggctgccgggggatggagagagagaggagagggagtgactgctt-aatgatgatggggtttccattcggggtaataagttttg-aactagatagaggcgacggttaatgacatcatgaatgtacagaaagccactgaattg-ttcacgttaaaatgg-ttacatgttacatgatgtgaattttgcctcaTAAAAGAAGTCCATCTGTATCACCAATTTAAATACATCTTCCTGGTAGTGCCTATTAAAATTATATTGACTTCGATCTTTTTATTATGAAAATAAACTGCACTCGGGTGGAAAAAGAAAGCAAACTTCTGCCACACTGGATGCTCGGAGGGAGGGGGCAGTCGCAAACCCAGGGCAGGAGGACGGCGCACAAGCCATGAACGGCAGCCGTCCGGGGGCATCATCACGGCGCCTCACCACCCCTTAT a score=9156.0 s hg17.chr17_random 1582286 82 + 2618010 CTGTGTGATT----CCNTGTTGTTGCCATCCTTCTCCCTAAGAAAGCATCTGCCCTGCTACCTGGAGGAGGGCAGCTGAGAGCTGC s panTro1.chr19 78949576 81 + 82489036 CTGTGTGATT----CC-TGTTGTTGCCATCCTTCTCCTTAAGAAAGCATCTGCCCTGCTACCTGGAGGAGGGGAGCTGAGAGCTGC s canFam1.chr18 28840599 79 + 66173745 CTGCAGGAATAGCCAC-TGCAGCTATTAACCTTCCCCTT-AGAAATGACCCGCCC-ATTACCTGCTGGGG----GCTGAGACTTGC a score=841.0 s hg17.chr17_random 1582368 20 + 2618010 CACTTGAAAATGCCTACAAG s panTro1.chr19 78949657 18 + 82489036 CAC-TGAAAATG-CTACAAG a score=7947.0 s hg17.chr17_random 1582701 99 + 2618010 cacctcccaccaggcccctncttccaacanttnggggattacaatttgacatgagatttgggtggggacacagatccaaaccatatcaCAGACCTTATG s panTro1.chr19 78949982 96 + 82489036 cacttcccaccaggcccct-cttccaacatt--ggggattacaatttgacatgagatttgggtggggacacagatccaaaccatatcaCAGACCTTATG a score=281356.0 s hg17.chr17_random 1582800 2089 + 2618010 AGTGGTACCAGCAGGtgtcttcagtgggacgccctagaaggagcccccaagctggggattcttgttcggtggaatttccaaggacagggttcccaggagtggagtgagggaggggacccatgtagggcaggggagaggctgaancaggcatggcctcagcaggaggccagcctcagcctgggcccacgagaaagctctgagagcaaatggcaccaGCGCCCTTGCCACCGT------GGGGCCAGCCCTTACGCCTCCTATCACCTGGCCAGGCACCGGTGGGCA-GTTCCCCACGGAGG--GCTGCCATGGG--TTGGCAG----AGCTGGGGCAGGG-CCCTCCTGA-----CCCCNTCTCCT-------------CCTCTCACCCAGTGGCCTTGAAGGCCAGAGCACAATCCCAGGGAGNGTTGGCAAAATTCCCTCCTTCACCTGAAGCCGGCACCAAGCCAGCTCTG--TGGGCCTCCCGGCAGCACCGCTTTGCCGACCTGCATGTGAGTGGCTGTTGCCAGCACCTTCCAGGCTGCCCAAAAGCCTCTGGAGTGCACCTGTGACAATTACAGGTTTCGTGGCACTAACAGCAATAATAATCATTAGAAAGCAGCCTGTGCCGGCTGCATCGGTTTCTTGTTTAGTTGTGCTTTGAGTGCAGTTAATCTTATAGCTAATATCTAAATGGAAAGGGCAGAAAG--ACTGTGTTCTTTCTATTTCCCCTCTAAATAGATGTTGCCTTCACCCAGGAACATNGGCTTAGCAAGAGGCATGGCTTACAGGCCTTGCCGTGCCCCAGGAATGGCTGCTCTGAACAGCTCACAAGGGTCCCGATTCCTTACTGCCGCNTTCAGCAAACGTTNCCTGCGGATTTTACGTGGTGACGGGTGCCCCCTGCAT--GATAGCCGTC-------CAGACCCCANGCACCCACAGAAACTAAGCCACCAAAAC--AAGACCTAACAGGAGGGGACCCGCAGGGCTCCTGAGCAGAAGGCTGGGCGTCAGGGGAGTCCCAGCAGATGGGCGCTTGTTCAAGTCCTCAGGGGCAGACAGAAGGTTCCAGAGAGGTCCTC--CCNTGCGGCTGCCGCCTCCCCGGGCTGTGCAGGGCTCACTTGCAGTTAATGAGCCCTCATTNAACATGTTGATGGGGATGTGTGCTGTGTCTACTTGGAACCCTTTCACTGTGATGGTTGT---TTTTGTTGGATTAATGATGCTCAGGTTGGATC-----CCTTCA-----------TAAAAGATGCTGCTTCCCCTCCTTCCCC--NAACCCCAGCCNTTTTCCTAACAGAGCAATGCCATTTTCCCAGGCAGGCCTCCCTGCAGCCTCCCACCCTCGGCCNAGCCCACTGACCCCAAATACTTGCCCGGACCATGATCCAAGTGCGTCCCT-GCTGGCTTCCCCTCCCCATA--TGGCTCCATGGGCCACTTCCAAG-TTCCAGGTCCCTCCTGCTTTCCTCTGAGCAATGCATTGATCCTGCGGCTGCCTCTGGGCCCAGCAGCTCCTTAGCCTGGGGATCCAGGAGGCAGGGGCTCCGGGGACCGCTTGGCTGGGACCATGCAGAGCAAGTCCAGGGCCAAGGCACCCAAGGCCAAGTTAAAGCTTGGAGCCTGGAATGACTCAGCGCGTGCCCCAGGAG--CTGGCCTCTCCAGTGGGCACTCA-GGGTTCTGGTGAGGAGCTAGGGGCACCTGCAGCTACCTCTGAAGGCGTGTTTCTTTCCCNAGGTGCTGTGGCAATTTAGGAACAAGCTCAGGT-GAAAGGTCGGTAATAAGGGAAG-AGGTCTGTGCCCTGGGGTAGGGTGTCTCCTCTGAAACCNATCGCGGACTTCCCCNAGCCTGGCTCGAGTGCCAGTCCACCTCCGTCACCTCCG---------TGTGACCTGGAATCTCTCCTCCATGTCCTTGAATCCCCTCCACCCACTCCTTGAA--------------------------------------CCCCTCCACNCTTGAACCCCCTCCACCCCCTCCCTGAGCCCCCTCCACCTTGAACCCCCTCCATCTTGAACCCCCTCACCTCCACTTTGAACCCTGCACAC-TCAGTCCAC--ACCTCTCACTGCTGCCCCTTTGCAGGTCTCATGCCCTTCCCCTCTCCCCTGAGTCCCCTCAACTGCCACATCTACTTCT--AAAGCTCCCCAG s panTro1.chr19 78950078 2121 + 82489036 AGTGGTACCGGCAGGtgtcttcagtgggacgccctagaaggagcccccaagcttgggattcttgttcggtggaatttccaaggatagggttcccaggagtggagtgagggaggggacccatgtagggcaggggagaggctgaa-caggcacggcctcagcaggaggccagcctcagcctgggcccacgagaaagctctgagagcaaatggcaccaGCGCCCTTGCCACCAT------GGGGCCAGCCCTTACGCCTCCTATCACCTGGCCAGGCACCGGTGGGCA-GTTCCCCATGGAGG--GCTGCCGTGGG--TTGGCAG----AGCTGGGGCAGGG-CCCTCCTGA-----CCCC-TCTCCT-------------CCTCTCACCCAGTGGCCTTGAAGGCCAGAGCACAATCCCAGGGAG-GTTGGCAAAATTCCCTCCTTCACCTGAAGCCGGCACCAAGCCAGCTCTG--TGGGCCTCCCGGCAGCACCGCTTTGCCGACCTGCATGTGAGTGGCTGTTGCCAGCACCTTCCAGGCTGCCCAAAAGCCTCTGGAGTGCACCTGTGACAATTACAGGTTTCGTGGCACTAACAGCAATAATAATCATTAGAAAGCAGCCTGTGCCGGCTGCATCGGTTTCTTGTTTAGTTGTGCTTTGAGTGCAGTTAATCTTATAGCTAATATCTAAATGGAAAGGGCAGAAAG--ACTGTGTTCTTTCTATTTCCCCTCTAAATAGATGTTGCCTTCACCCAGGAACAT-GGCTTAGCAAGAGGTATGGCTTACAGGCCTTGTCGTGCCCCAGGAATGGCTGCTCTGAACAGCTCACAAGGGTCCCGATTCCTTACTGCCGC-TTCAGCAAACGTT-CCTGCGGATTTTACGTGGTGACCGGTGCTCCCTGCAT--GATAGCCGTC-------CGGACCCCA-GCACCCACAGAAACTAAGCCACCAAAAC--AAGACCTAACAGGAGGGGACCCGCAGGGCTCCTGAGCAGAAGGCTGGGCGGCAGGGGAGTCCCAGCAGATGGGCGCTTGTTCAAGTCCTCAGGGGCAGACAGAAGGTTCCAGAGAGGTCCTC--CC-TGCGGCTGCCGCCTCCCCAGGCTGTGCAGGGCTCACTTGCAGTTAATGAGCCCTCATT-AACATGTTGATGGGGATGTGTGCTGTGTCTACTTGGAACCCTTTCACTGTGATGGTTGT---TTTTGTTGGATTAATGATGCTCAGGTTGGATC-----CCTTCA-----------TAAAAGATGCTGCTTCCCCTCCTTCCCC---AACCCCAGCC-TTTTCCTAACAGAGCAATGCCATTTTCCCAGGCAGGCCTCCCTGCAGCCTCCCACCCTCGGCC-AGCCCACTGACCCCAAATACTTGCCCGGACCATGATCCAAGTGCGTCCCT-GCTGGCTTCCCCTCCCCATA--TGGCTCCACGGGCCACTTCCAAG-TTCCAGGTCCCTCCTGCTTTCCTCTGAGCAATGCATTGATCCTGCGGCTGCCTCTGGGCCCAACAGCTCCTTAGCCTGGGGATCCAGGAGGCAGGGGCTCCGGGGACCGCTTGGCTGGGACCATGCAGAGCAAGTCCAGGGCCAAGGCACCCAAGGCCAAGTTAAAGCTTGGAGCCTGGAACGACTCAGCGCGTGCCCCGGGAG--CTGGCCTCTCCAGTGGGCACTCA-GGGTTCTGGTGAGGAGCTAGGGGCACCTGCAGCTACCTCTGAAGGCGTGTTTCCTTCCC-AGGTGCTGTGGCAATTTAGGAACAAGCTCAGGT-GAAAGGTCGGTAATAAGGGAAG-AGGCCTGTGCCCTGGGGTAGGGTGTCTCCTCTGAAACC-ATCGCGGACTTCCCC-AGCCTGGCTCGAGTGCCAGTCcacctccgtcacctccgtcacctccATGTGACCTGGAATCTCTCCTCCATGTCCTTGAATCCCCTCCACCCACTCCTTGAACCCCTCCAGCTTGAACCCTCTCCACCCCCTCCCTGAGCCCCCTCCAC-CTTGAACCCCCTCCACCCCCTCCCTGAGCCCCCTCCACCTTGAACCCCCTCTATCTTGAACCACCTCACCTCCACTTTGAACCCTGCACACTTCAGTCCAC--ACCTCTCACTGCTGCCCCTTTGCAGGGCTCAAGCCCTTCCCCTCTCCCCTGAGTCCCCTCAACTGCCACATCTACTTCT--AAAGCTCCCCAG s canFam1.chr18 28840717 1876 + 66173745 ATAGGTACCTGCAGGTGTCTTCAGCGGGG-GCCCTAGACGGTGCACCCAC-CTGGGGGTTCCTGGTGGGTG--ACTCCCATG---AGGGCTCCCAGAAAAGGTAGAGGGGAGGGAACACCTG--GGGCAGGGGAGAGGCGGGA-------------------GGGG---ACCTCAGCCTGGGGCCA-------------------------------GCCCTTTGCACTGCCTGTCAAAGGCGGGTCGCTGGGC------------GGCTGGG---AGGTGGGTGTGTTCTCCACAGAGGAAGCAGATCTGGGCATCTGCAGCACCAGCTCCAGCAGGGACCCTTCTGGCCGGTCCCC-TCTCCCTCCTCCTCCCCAACCTCCCACTCTGTGGGCTTGAAGACCATAG----------------TGTGAAAAACTTCTAACCTTGTCCTGAGACTGACA-CAACCCAGCTCTGCCTGGACCCTCTGGTCGCCCCTCCTGGTGGGCCCACCCAGGGATGGCAACTATCGGCCCCTTCCAGGCTGCCCAAAACCTTCTGGAAGTCACCTCTGATCATCGCAAGTTTAGTGGTGCAAATCAGGACAACGATAACTAAAAGGCAGCAGACCCAGGCTGCACTGATTTCTTGTTTCATTTTGCTCTGAGAAGAGTTCATCTTACAGCTACTACTTAAATGGGCAGGCCAGGAAGGAATTACACCCTCTC---TCCCGCTCCACGCAGATTTTGCCCTGGTCCGGTGACATGAGCTCCGCAAGGGGCTTGGGGTACGGGCCCCGCTGTGACCCGGGATTGGCGGCCGTGAGCAGCTTGCAGCCCTTCCAATTCATTACTGCCGCTCTGGGCAAGCCAT-CCTCCGGATT-------GTCAGCGGCTCCTCCTGCGTTAGGCAACCCCCTCCTCAGCAGACCCCAGGCCGCCA---GAACCACGCCGCCAGCACAAAAGGCCCAACAGGAGGGGG--TGCAGG---CCGCGGCAGAAGGCTGAGCCC-----GGGTCCCGGCAGATGGGCGCAGGCTCGAGTCGCCAGGGGCGGACAGAAGGTTCCGGGAGACACCTCCACC-CGAGGCTGCCTCCTCC---GGCTGCACGGAGCTTGTTCACAGCTAATGAGCCCTAATT-AACATGTTGATGGGGATGTGCGCTGTTTATATTTGGAAACTTTTTACTGTGTTGGCTGTGGCTTTTGTTGGAGTAACGGTGCTCAGGTTGGATCACGGGCCTTGGAGAACTGGTGTTAAAAGAAGCTGCCTCCTCTCGTCCTCCTGGGCCCCCTGCC-CTCTC-------------------------------CTCCTCCACGGCCCCCCGCCCTCCACC-AGCCCTCCGAGCCCCATCACTTGCCGGGGCCACATGCCAGCTGCATCCATGGCT--CTTCTCCAGACCATGGTGGGTTCCAAGCTACGCATCCGGGCTTCCAAGGTCATCCTGCTTCCCTCTAGGCAACTCGTTGATCCTG-----GCACCTGGACCTGGCA-CTCTTTGGCTGGGGCATCTGAGAAGGAGGGTCCTATGGGACCATTTGGATGGGGCCCC-TGGAGGCAGCTGAGGGCCAAGACA-CCAGAACCAAGTTAAAGCTGGGAGCCTGGATCTGCTCAGAATATCCCTCTGGAGATCGAGCCCCTCACTGACACATCCAGGGGTTCTGGTGGGGAGCAGCAGGCACCTGTAGTCGTC-CGGAGAAAACACCTTTTTCCC-AAGTACTATGGCAATTCAGGAGCAAGCTTGGATCCAGAGGTCACGATAAGGGGAAGAAGGACTGTGCCCTGGGGTAGGGGCTCTTCTCTGAGACC-ACTACCGGTTTGTAC------------------AGCCTGCTTCCA----------------------------------------ATGTGCTT-------TTCCAACTTCCCC-------------------------------------------TCCCACCTC-TTCAAACCCTCTCCAGCCTC----------------------------------------CCTCCTAACCTC-------------ACATGC-TCAGACTTCTGTCTTCTTACTTCTGTACCCCTGCAT------AGCCCTCCCCTGCCCA-------TCCCTCACCCCTCACCCCAGCTTCTCAAAAACCTACCAT a score=1170.0 s hg17.chr17_random 1584889 28 + 2618010 CCTCTTGATGCAGTGTATTAGTCAGCGA s canFam1.chr18 28842593 28 + 66173745 CTTCTAGACCCAGTACATCAGTCAGCTT a score=11770.0 s hg17.chr17_random 1584917 160 + 2618010 CTGCAGAGTTAACACTAGGTAAGAAAACTCCCGCCATGTCACT----GG----GGAAGGTATTCATTCCTACCTGGCGAGCCTGCAGGC---GGGTCCGAGCTCTGCTGGTTAGAG-CGGGCTCCACCCACCA-CTCTGCTGCA-GCTGCGTTCCAGGAGAGCTT-CCTCCAGAC s panTro1.chr19 78952300 160 + 82489036 CTGCAGAGTTAACACTAGGTAAGAAAACTCCCGCC----CCCTTAAAGG----GGAAGGTATTCATTCCTACCTGGCGAGCCTGC---CTTTGGGTCCAAGCTCTGCTGGTTAGAG-CGGGCTCCACCCACCA-CTCTGCTGCA-GCTGCGTTCCAGGAGAGCTT-CCTCCAGAC s canFam1.chr18 28842621 160 + 66173745 CTACCCACAtaatgctgcctaacaaactacccccaaagtcagt----ggcttataaAAGAATTTGCCCTCAC--------TCTGA---CCTCAGATCTCCTTCCTGCTGGTGAAAGATGGGCTCAGCAGGGCAGCCCTATCTCAGGCTGTGTATCACTTGAACTTGACTCTAGGC a score=17609.0 s hg17.chr17_random 1585077 52 + 2618010 CAGGCTGGGCCCAGGCCTGTCCCTCGTGTGTTCATTCTGAAGCCCAGGCTGA s panTro1.chr19 78952460 52 + 82489036 CAGGCTGGGCCCAGGCCTGTCCCTCGTGTGTTCATTCTGAAGCCCAGGCTGA s mm5.chr6 114752313 52 + 149721531 CAGGCCAAGCTCAAATCTGCTCTCTGTGTGTACACCCTGTAGTCCAGGCTGA s canFam1.chr18 28842783 51 + 66173745 TGGAATGGGCCCAGGTCTGCTCCCCGTGTATTTATCC-AAAGCCCAGGCTGG a score=0.0 s hg17.chr17_random 1585129 16 + 2618010 AGGAGCAGTGGCTGCC a score=3019.0 s hg17.chr17_random 1585129 16 + 2618010 AGGAGCAGTGGCTGCC s panTro1.chr19 78952512 16 + 82489036 AGGAGCAGTGGCTGCC s mm5.chr6 114752365 16 + 149721531 AGGGACAGTTACTCCC a score=122950.0 s hg17.chr17_random 1585145 1042 + 2618010 TGAGGCCTGCTTTTCTCCAGGCATCTGTCACTGGGAACTCAAGAACCAAGCCAGCCACGTGAGCTCTGTGTGCATCTTGTCCACTGCCATCCCGCTGGNTCAACAGTCAGNGCC-CTGGAGCC-CAGTGTCAGTAGGGAAGGGGATGTAC-------ACTCTGCCTGCAGTGGGAGAAAGCCCNGGGAANTCCTTGCTAGGAATCGCACCA--------------GCTTGAANCCCACTTCCCGGGCTGCACTGCCGGGCCCCCTGAGCAGCCAGACCCCC--TCCTGCCTCTGAGTCTCGAACATGCTATGGACCTCCCCCGGCACAGGCCCAG-CAATGTGC-----TGCATATGCTG------------GGTTGCCGATGCC-TACAGTTCTGTGGCCTCTCGTGgtcctgtttaccc-gcacaaccccttgcatgatccctgtcacatagtagatgctcagcaCA-CACT-----------------------CTGTAATCT----------------CCTCGCGCACCCANGCNTTTCTATC------ACTCAGAAGGGCCAGGTTCACCCCNAGNCATNACCCACCCCAACCCCCACAGCTCAACAAAGGAGTGCGCTTCCCCCACAGGTTGGGGAAGCTTTGATGTGCTGGCCCCATCCAGGCCCAAGGCAGGGACAAGGGGACCAGCTGTTCTct---------------gccctgccctgccctgccctAGCCTCTGCAGAGACACCTCCAGCTCTGTTGCTATGGTTGCCACTCTGTTATCCCCTCTGCTTGCTCACCGATGCCAGACTTTTCTAGAGTGGGAACTGACCCACACTCTCTAACAGGGCATAAATCATCAAAACTTTAAAGTCCTGGTTAAGACCCAGGGACAGGAAGGGCCCCGAAATCCTGTGCTGGTGAGAACGTGGCTTCACTTCTCCCCTGCA-GGGCCATCTGGGGGNTTGGC-------AGGCATGG----CAGGTCCATCAGAATCCCACCCTGCCCCAGGCAG--GGGGCTCTGAGAGCTGAAAGC-GGGACGAGCGCTGGGTGTGGACACATTAAAGCAGACAGGTGAGATGC-TGAGGGCGTTACTGACCCAGGTTGAGCATCAAAGAAACATTTGTCGAATGAATTAATGAAT s panTro1.chr19 78952528 1031 + 82489036 CGAGGCCTGCTTTTCTCCAGGCATCTGTCACTGGGAACTCAAGAACCAAGCCAGCCACGTGAGCTCTGTGTGCATCTTGTCCACTGCCATCCCGCTGG-TCAACAGTCAG-GCC-CTGGAGCC-CAGTGTCAGTAGGGAAGGGGATGTAC-------ACTCTGCCTGCAGTGGGAGAAAGCCCAGG--AATCCTTGCTAGGAATCGCACCA--------------GCTTGAA-CCCACTTCCCGGGCTGCACTGCCGGGCCCCCTGAGCAGCCAGACCCCC--TCCTGCCTCTGAGTCTTGAACATGCTACGGACCTCCCCTGGCACAGGCCCAG-CAATGTGC-----TGCATATGCTG------------GGTTGCCGACGCC-TACAGTTCTGTGGCCTCTCGTGGTCCTGTTTACCT-GCACAACCCCTTGCGTGATCCCTGTCACATAGTAGATGCTCAGCACA-CACT-----------------------CTGTGATCT----------------CCTCACGCACCCAG--CTTTCTACC------ATTCAGAGGGGCCAGGTTCACCCCA--GCAT-ACCCACACCAACCCCCACAGCTCAACAAGGGAGTGCGCTTCCCCCACAGGTTGGGGAAGCTTTGATGTGCTGGCCCCATCCAGGCCCAAGGCAGGGACAAGGGGACCAGCTGTTCTct---------------gccctgccctgccctgccctAGCCTCTGCAGAGACACCTCCAGCTCTGTTGCTATGGTTGCCACTCTGTTATCCCCTCTGCTTGCTCACCAATGCCAGACTTTTCTAGCGTGGGAACTGACCCACACTCTCTAACAGGGGATAAATCATCAAAACTTTAAAGTCCTGGTTAAGACCCAGGGACGTGAAGGGCCCCGAAAGCCTGTGCTGGTGAGAATGTGGCTTCACTTCTCCCCTGCA-GGGCCATCTGGGGGCT-GGC-------AGGCATGG----CAGGTCCATCAGAATCCCACCCTGCCCCAGGCAG--GGGGCTCTGAGAGCTGAAAGC-GGGACGAGCGCTGGGTGTGGACACATTAAAGCAGACAGGTGAGATGC-TGAGGGCGTTACTGACCCAGGTTGAGCATCAAAGAAACATCTGTCGAATGAATTAATGAAT s canFam1.chr18 28842834 1079 + 66173745 TGTGGCCCTGTTCATGCCA------TATCACC-GGAGCACAGAATCCAAG-------CATGTGCTCTGCTCATGCCTTGTCCACTGTCATCCCATTGA-ACAACA--CAA-GCCACTTGATCTACCCTGGCAATGGGGAAAGGAAAATACTGTTCTTTCTCTGCCCATGGTGGGAGACAGTGTATG--AATATTTGCTAAACAGCAAACCCAAACTATCTCCCTTGCCTAAGTCCTGCATCCCACGAAGATTCCCTGGCTCTCCTGACCAGCCAGCACTCCTTTCCCACCTCTGAACCTCCCGCTTCATGACAGCCTCCTCTGGTCCCTGCTCAGTCAGTGTGCAGTGACGCGTGTCCTGTGGTCTCATCTAGATTACAAACACCTTGCATTTAGGTCACTTCCCAAGgttccgtttgccctgcacaacccttggcgtggttcctggcacacaagacatgctcaataaattacttacaaataaatgaatAAGTGAAGTTGTGCCTTTGAATCAAAGGCAGTGCCCCAGCCATAAGG--CTTTCCCCCTGTCATGCACAGAAGGGCCAGGTTCAT------GGAC-A--------------CAGGGCTCCTCAAGGGAATGAGCCTCCCCTGCCTGCTAGGGAGGCTTTGACATGCTGGCCCCACC----CCCAGGTCAGGGACGAGGAACCAAGGTCTTCTTCTGGCAGCCAAATGTGGCCCTGACCAGATGCTCCCT---TTCTGCAGA-----CTCCTGCCCTGG---CATGGTTGCCGACC----ATCCCT---------------ATGC--AGCTTTTCTAACATGGCAGC-AACCCACACTCTCCAAAAGGGG-CAAACTAACAAAACTAAAAAGTCCCAATTAGCACCCAGGACTGGGATGGACACATAGCTCTTCTTCTGGTAAAAATGTAGCTTCACATCT-CCCTGCATGAGTGACCCAATCACT-GGCTCCATATAGTTGTGAGCCCCAGAAGTGTCAGA--CTCACCATGGCTATGGGTGGTGGGGCTCTGGGAGCTGGGGCCAGGGAAGGGCAGCCAACCTGTAAGTGTTAAAGCAAATTGATAAAATACTTGAAGGTCTTGTTAACACATTGCGGTCCCCAAAGAAACATTTGTtggatggatggatggat a score=273.0 s hg17.chr17_random 1586187 3 + 2618010 AAT s panTro1.chr19 78953559 3 + 82489036 AAT a score=74192.0 s hg17.chr17_random 1586190 572 + 2618010 GACAAGGCATTGCTTCCATTGCACCATGCTGATGTAACCCCagggtggcc-accatcccagtttacccagga---ccanaggggcaacctgggatgcaggactttcagtactcaagtcaggagagtcccaggcaaactaggacaaatgggtcaccctCCATGAACAAGGAGATCCTTCAGCCCCTTCCCGGTGACTC-----TGCTTGG-GGTGGAGGGAGAGGCAGAGGCCAGAGC-------------------CCAGCGGCTCCTCCGCACCCGCTCGC------CTGGGCCCAGAGGGGTGCACCAGCCTCTG----------------NGGGGAGTCCTGCCATGGCCACCCACAAGCTGCTCA-GAGGGGAGACAGCGGGNACCCCTGGTGGCTGGGAATGAGACTCAGCATCTCCAGGGCAGGTCCAGGAGCCGCCTCATCTCATCCAGTCGTGGACACACCCAGGAGTTCTGCTGGCAGCAGGAAGCAGGCGCTGGTTGGCTTCTGTTTGCNCGATGTCTGTCCTGAGAGGGAGGTGGGCTTGTTTCTGGGACAGCCGAAAAGCAGAGAACCAG-GATTGCCTCCAACCCTGTGGCTTCCACCTGGCCAGCCCCTCA s panTro1.chr19 78953562 568 + 82489036 GACAAGGCATTGCTTCCATTGCACCATGCTGATGTAACCCCaaggtggcc-accatcccagtttacccagga---cca-aggggcaacctgggatgcaggactttcagtgctcaaatcaggagagtcccaggcaaactaggacaaatgggtcaccctCTATGAACAAGGAGATCCTTCAGCCCCTTCCCGGTGACTC-----TGCTTGG-GGTGGAGGGAGAGGCAGAGGCCAGAGC-------------------CCAGCGGCTCCTCTACACCCGCTCGC------CTGGGCCCAGAGGGGTGCACCAGCCTCTG-----------------GGGGAGTCCTGCCATGGCCACCCACAAGCTGCTCA-GAGGGGAGACAGTGGG-ACCCCTGGTGGTTGGGAATGAGACTCAGCATCTCCAGGGCAGGTCCAGGAGCTGCCTCATCTCATCCAGTCGTGGACACACTCAGGAGTTCTGCTGGCAGCAGGAAGCAGGCGCTGATGGGCTTCTGTTTGC-CGATGTCTGTCCTGAGAGGGAGGTGGGCTTGTTTCTGGGACAGCCGAAAAGCAGAGAACCAG-GATTGCCTCCAACCCTGTGGCTTCCACCTGGCCAGCCCCTCA s canFam1.chr18 28844246 526 + 66173745 gatggGGCATTGCCTCTACTGCACTA---TGATGTGAACACAGCATAACCAACCATCCTAGCTGACCCAGCACCCCCAGAAAGGTTTTCTGAGATGCAGAA------------AACTTAGGAAAGTTCCAGGCAAGTCAGGGTGAGTTGGTTGCCTTCTGTGAACAAGCAAAGCCATCAAGTCCTTCAGTGTAGCTCTCCTGTGCCTGGCCTTGGGGAGAGGGGCAGAAATCAGGGCCATAACAGTAGCAGACAGACCAGAGACTCACCCCCACCTGCACACAAACTTCCCCGGCAAGAAGAAAGGATCAGTTCCTGGAGGACCATTCCATCAGGGTGACTCTTGTTGATGCCCCCGGCTAGCTGCTCCTGAGAGGAAACAGTGGGAACCCCTGAAGGCTGGGGAAG-----CAGGCTCTCCTGGGC----------------------------TCCTTGGCTGCTAAGAGGAGCTGTGCTG------GGAAG-----------------------------------------GGGGGGGGGGGGCTTGTTTCTGGAGCAGCAGAAAAGCAGAGAACTAGCAATGGCCTCCAAGTCTGGGGCTT----CTGGCCAGTGCCTCA a score=152328.0 s hg17.chr17_random 1586762 1807 + 2618010 CCGAGTCATTGTGGNCTCCTTCAGAAATCACAGANTTNGGGGTTTCCCAAGCACCGCCGGCTCAGTTGGCAGGACTGACTTTGGACAGGAGACACATGAGACCCTGACTGAAGCTCTGCAGCTGAGGACCCCCACGGCACTCAACAGGCCNCCAGGAATGCACAGCTCCNTGAGAGGGGATGAGAACATTCCTGGGGNTTTGCAAAGCTCAGATCTAAGGCTAAACGCAGTGTTCTGCTTCAAGCAGGNAACCCAGGACATGTGAGCCAGAAAGGAGTGGGgagagagaggaagggagggaggaagagaggggtcanggaggagagagacacagagagaaggagagagacacagagagaaagagggagagagggaaagangggagagagaaggagaaagGACCTGCTGAAACGTGAAAACAGAAATCCAANCCagaanaganggagacagggttgnaaggnaggaaggaaagaggtagaaagctgaaagtgaggnagaaggaaggaaACTCCGTTCTGCCCTCGTGCCCAGACAACAGGTGCTCATTCAGAAAGCATGGTGGCTCTGGGCCCAGAGATGCCCTGGGGCTGCCCAGATGCCGCAGGGGTCAGTCGCCTCCCGGAGGCAGAGCTCAGCCAGTGTTGCCTCCAACCCTCACCTCCTGGCCCAAGGTGAGCCACACACATTTCTACACATGGAAAGGAACTGTGGAACTGGAGAGGGTGAGCCCAAAGACCCATGTAGACCACTGAAGGCCCAGACATAGCAGNAGACGCCCTGACGAAGAGCACCAGGGGGTGAGGGCACTGCCCTGCCAGCCCCTAAGACACTATAAAGACACACTAAAGACAGCGGCAGTAGGCAGCACTGGACTGGCAGAGAGACCCATNGGGACAGAACAGAGCCAGGGCAGCCCCANTGCACTGATGTGAGCTTGGTCATGACCAAGTTCACGCTGCAGGCGGCATCGCGGGNAAACGGTGCTTGGAGTCAGGTTATCTATACTCTAAAATAAAATGTGATACCCCCCACAAGTTTAAAATTTTTTCAAAGAAATGATTTATGATCTTGTGGTCCATAAGAAGGTCTTTTTTAAAAATCACACAAGCCATAAAANGAAATAATTGAGAAAATGTAACTGCTTAAATTTTTTAAAAACCTATTCAAGGCCANggcggggtggctcacacttgcaatcccagtgctttgggaggctganggcaggcagataatctgaggtcanggagttcgagaccagcctggccaacatgatgaaaccctgtctctactaaaaaagaaaaaaaaaanttagnctgggcgtggtggtgggcgcctgcaatcccagctacttgggaggctgaggcaggagaatcacttgcacccaggaggcggaggctgcagtgaatggagatcgtgccactgcactccagcctgggcgactgaacatgactccatctcaaaccaaaaaacaatacaaaacaaCTACAAAggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcagatcacgaggtcaggagatcgagaccatcctggcgaacacggtgaaaccctatctctactaaaaatacaaaaaattagccgggcaaggtggcaggcgcctgtagtncccagctactcaggaggctgaggcaggagaatggcatngaacccgagaggncggagcttgcangtgagnccgagatcatgccactgcactccagcctgggcgacagagcaagactccatctcanaaaaacaacaagaacanacaacaacaaaAG s panTro1.chr19 78954130 1772 + 82489036 CCGAGTCATTGTGG-CTCCTTCAGAAATCACAGATT--GGGGTTTCCCAAGCACCACCGGCTCAGTTGGCAGGACCGACTTTGGACAGGAGACACATGAGACCCTGACTGAAGCTCTGCAGCTGAGGACCCCCACGGCACTCAACAGGCC-CCGGGAATGCACAGCTCC-TGAGAGGGGATGAGAACGTTCCTGGGG-TTTGCAAAGCTCAGATCTAAGGCTAAACGCAGTGTTCTGCTTCAAGCAGG-AACCCAGGACATGTGAGCCAGAAAGGAGTGGGgagagagaggaagggagggaggaagagaggggtca-ggaggagagagacacagagagaaggagagagacacagagagaaagagggagagagggaaaga-gggagagagaacgagaaagGACCTGCTGAAACGTGAAAACAGAAATCCAA-CCAGAA-AGA-GGAGACAGGGTTGAA--GAAGGAAGGAGAGAGGTAGAAAGCTGAAAGTGAG----AAGGAAGGAAACTCCGTTCTGCCCTCGTGCCCAGACAACAGGTGCTCATTCAGAAAGCACGGTGGCTCTGGGCCCAGAGATGCCCTGGGGCTGCCCAGATGCCGCAGGGGTCAGTCGCCTCCCGGAGGCAGAGCTCAGCCGGTGTTGCCTCCAACCCTCGCCTCCTGGCCCAAGGTGAGCCACACACATTTCTACACATGGAAAGGAACTGTGGAACTGGAGAGGGTGAGCCCAAAGACCCATGCAGACCACTGAAGGCCCAGACATAGCAG-AGACGCCCTGACGAAGAGCACCAGGGGGTGAGGGCACTGCCCTGCCAGCCCCTAAGACGCTATAAAGACACACTAAAGACAGCGGCAGTAGGCAGCACTGGACTGGCAGAGAGACCCAT-GTGACAGAACAGAGCCAGGGCAGCCCCA-TGCACTGATGTGAGCTTGGTCATGACCAAGTTCACGCTGCAGGCGGCATCGCGGG-AAACGGTGCTTGGAGTCAGGTTATCTATACTGTAAAATAAAATGTGATACCCCCCACAAGTTTAAAATTTTTTCAAAGAAATGATTTATGATCTTGTGGTCCATAAGAAGGTCTTTTTTAAAAATCACACAAGCCATAAAA-GAAATAATTGAGAAAATGTAACTGCTTAAATTTTTTAAAAACCTATTCAAggcca-ggcggggtggctcacacttgcaatcccagtgctttgggaggctga-ggcaggcggatcatctgaggtca-ggagttcgagaccagcctggccaacatgatgaaaccctgtctctactaaaaaagaaaaaaaaaa-ttag-ctgggcgtggtggtgggcgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgcacccaggaggcggaggctgcagtgaatggagatcgtgccactgcactccagcctgggcgactgaacatgactccatctcaaaccaaaaaacaatacaaaaCAACTACAAAggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcagatcacgaggtcaggagatcgagatcatcctggcaaacacggtgaaaccctatctctactaaaaatacaaaaaattagccaggcaaggtggcaggcgcctgtagt-cacagctactcaggaggctgaggcaggagaatggcgt-gaacctgagagg-cggagcttgca-gtgag-ccgagatcatgccactgcactccagcctgggcgacagagcaagactccatctca-aaaaacaacaacaaca-acaacaacaaAAG a score=12192.0 s hg17.chr17_random 1588569 62 + 2618010 GCTGGGCACGGTGGCTCACGCCTGTAAACTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAA s panTro1.chr19 78955902 62 + 82489036 GCTGGGCACGGTGGCTCATGCCTGTAAACTgacagagcaagactctgtctcaaaaaaaaaaa s rn3.chr15 2488785 62 + 109774626 GCTGTGTGTGGTGACTCAGGCTTGCAATCTACCATGGTGAGACCCTGCCTCAAAAAAAGAAA a score=48588.0 s hg17.chr17_random 1588631 555 + 2618010 AAAAAAACCACATACAAAACAAACAGAAAGTGGAAAAACAAGTCAGAAACCCAGAGATGGTTGCGGCATGCATAACTGATAAAGTttgtattcagagtgcatttaggactcataaaaatcaatgttaaaaaacacacgagacaatcggaaaataaacaaaagaccaaaaaaaggcatttcatacaaggaa--gtgtctagccgatgaaaatgtggatccgtattcaacctcattagcacccagagatacagacattgaagccgcaatgagaaaccactgcataggcatccaatactcaaaccatctttaatggggtaaatggggtaatatctggtattggccaggatgtgggttcaggatccatcagacacgattggtnggacttgtcaccgctgcagccacttaggaaaccgttcggcctcacctgacgaagctgaaaatgtgcttccctgagacccgacaactctccttcttggcaaatgttttagaangtcttgcccatgntgcaccaggagacgtggacattcacagcagtgatgctcaaactgattaaaatc s panTro1.chr19 78955964 553 + 82489036 aaaaaaaCCACATACAAAACAAACAGAAAATGGAAAAACAAGTCAGAAACCCAGAGATGGTTGCGGCATGCATAACTGATAAAGTttgtattcagaatgcatttaggactcataaaaatcaatgttaaaaaacacacgagacaatcggaaaataaacaaaagaccaaaaaaaggcatttcatacaaggaaatgtgtctagccgatgaaaatgtggatccgtattcaacctcattagcacccagagatacggacattgaagccgcaatgagaaaccattgcataggcatccaatactcaaaccatctttaatggggtaaatggggtaatatctggtattggccaggatgtgggtccaggatccatcagacacgattggt-ggacttgtcaccactgcagccacttaggaaacagttcggcctcacctgacgaagctgaaaatgtgcttccctaagacccgacaactctcct-cttggcaaatgttctagaa-gtcttgcccatg-tgcaccaggagacatggacgttcacagcagtgatgctcaaactgattaaaatc a score=33501.0 s hg17.chr17_random 1589186 320 + 2618010 acatcctccacctggagaaccngagggctgctgtgcattcagacgctggaattccacacagcactgaaa--aagtgggccnacagccacaca----------------------------tctgcacatttgcccatctcag---aaacgacacangagtcaaaaaaaaaaaaaaaan-------gcaagaagnaattacacactnggnaattccatccaaataaagctcagaaatatacaacntgaacca-catgtgatttagagtcagaaa--cagcagataaaactataaa----agcaaa-gaatagnaaaacaccacactcaggatgctgttcccatttggaggaagggggagaaggcaggga s panTro1.chr19 78956517 319 + 82489036 acatcctccacctggagaacc-gagggctgctgtgcattcagacgctggaattccacacagcactgaaa--aagtgggcc-acagccacaca----------------------------tctgcacatttgcccatttcag---aaacgacaca-gagtcaaaaaaaaaaaaaaaaaaaaaaaagcaagaag-aattacacactgg--aattccatccaaataaagctcagaaatatacaac-tgaacca-catgtgatttagagtcagaaa--cagcagataaaactataaa----agcaaa-gaatag-aaaacaccacactcaggatgctgttcccatttggaggaagggggagatggcaggga s canFam1.chr18 28844811 350 + 66173745 ACATCCTACAACTGGAGGACG-GGGGTTCATGGTGCGTTCCCACACCGGAATTTTACCCGGCACTAAAAAGAAATGAACCCCCGGAAAAAAAAAAAAAaaaaaaaagaaatgaaccccagtctgcaggcaag--aagctcaggaaaaaaaacgta-gagttaaaacaagaaaaaaaag-------gtgcagaa-aaaaatacagtgt--gagtctatgcgactagag-ttagaaatacgcaag-taaatcatcccgctgtttggagg-agacacgcagtagtcacaaccataaagaagagcaagcgaatga-accattcgaaacacaggacagagttccccttttggggacagggaataaaaccggga a score=124027.0 s hg17.chr17_random 1589506 1129 + 2618010 atgaaactgggaggcg-ggcaGGANCCCAGAAGGCCACGCCAGCCATCTGTGCCTCCGGCCGGTGGTGGACACA-GGACACACTTTGCTTATTCATTATTTATACGTAAATGTCTCTGCATATTTCATCATGCTCCAAAAGAACGCAAATG-AAGGCAAGAAGCTAACGCAACAGGACAGGGGGCCNGAGGGAGGAGAGGCCAGGCAGGCTCCAGCTAGGGAAGGCTTGTTCTCAACACCCCCCCGGTCAGCTGTTNNGGGGGCTGTGCCCNTTNCCCCCCACNCACACCCTACCATCTTCTGATGCTCTGTCCTCGTCCCACAGAAGTGACTGG--TCTGGGTCTGACACCCGGCACGTGAGCATCCCCAGGATGTGAGGGGCAAAGCATACCTGTGGTCCCCCCACCTGGGGGCTCATTAAAAACGNCNGTGTGGACTGCACTGCGCTGTGCTGACCCGGGCTGGTCCGGGATGTGTGGACGCAGCCGCTGGTTGGAAACGTCCATTGTGCCGCTGGCTGGTGGAGGACGCCGCATGGCTGAGCCACCCCGAGGGGACCTGGCTTCCTTCCCCCTTCCTTGTCCAGTCGCCTCTTCCTTCCCTCTGGTCCTCACTCCGACTTAACCCACAGCTTTGGG--TGGGCTCCCTGCTGCCCCAGTGGGCCCAGTGGGCAAGGAGGGGCGACCCCCAGGATCCTCAGAAAAGCAAACCCTCTCTCCACAGTGCCCCTCGCTGCCCCACATTTCCNCCAGGTGTGTGGGGGCCACACAGTG--GCAGCCAGGTCTCTTTCAGTGCCTNCCCTCCGCCTGCCCCAGGAGGGACACCCTAGAACCCCACTCAGCACCCACCAATGCACAAGC-CAGAGCAGCTAACCTCT-GCCCTG-----------TGCATTGGCCTTGGGCCAATTCTTCCCCCNACTTGCCTCTCTG--------------ATGGCCTTTCCAGGGTCTGGGGTTGGGGGGGATCCTGAGAGCCTGGCCGTCAGTCCCGCNCTGGAGGAATCACTCA----GCCTGGAGTGGGCTCCACCTCCNTTCCCTGCCCCTCCCCNAAGGTGTGGGACTCTGTGCCTCAAGCTCTGCCTTCCAGCNCGTCTAGGCTGAACCCCCAGATGACAC-CCCAGAGCCTCCACAGAGCCCCG s panTro1.chr19 78956836 1131 + 82489036 atgaaactgggaggcg-ggcaGGA-CCCGGAAGGCCACGCCAGCCATCTGTGCCTCCGGCCGGTGGTGGACACA-GGACACACTTTGCTTATTCATTATTTATACGTAAATGTCTCTGCATATTTCATCATGCTCCAAAAGAACGCAAATG-AAGGCAAGAAGCTAACGCAACAGGACAGGGGGCC-GAGGGAGGAGAGGCCAGGCAGGCTCCAGCTAGGGAAGGCTTGTTCTCAACACCCCCCTGGTCAGCTGTT--GGGGGCTGTGCCC--TCCCCCCCAC-CACACCCTACCATCTTCTGATGCTCTGTCCTCGTCCCACAGAAGTGACTGG--TCTGGGTCTGACACCCAGCACATGAGCATCCCCAGGATGTGAGGGGCAAAGCATACCTGTGGTCCCC--GCCTGGGGGCTCATTAAAAACGC--GTGTGGACTGCACTGCGCTGTGCTGACCCGGGCTGGTCCGGGATGTGTGGACGCAGCCGCTGGTTGGAAATGTCCATTGTGCCGCTGGCTGGTGGAGGACGCCGCATGGCTGAGCCACCCCGAGGGGACCTGGCTTCCTTCCCCCTTCCTTGTCCAGTCGCCTCTTCCTTCCCTCTGGTCCTCACTCCGACTTAACCCACAGCTTTGGG--TGGGCTCCCTGCTGCCCCAGTGGGCCCAGTGGGCAAGGAGGGGCAACCCCCAGGATCCTCAGAAAAGCAAACCCTCTCTCCACAGTGCCCCTCGCTGCCCCACATTTCC-CCAGGTGTGTGGGGGCCACACAGTG--GCAGCCAGGTCTCTTTCAGTGCCT-CCCTCCGCCTGCCCCAGGAGGGACACCCTAGAACCCCACTCAGCACCCACCAATGCACAAGC-CAGGGCAGCTAACCTCT-GCCCAGAGGGAGGAGGATGC-----CCTTGGGCCAATTCTTCCCCC-ACTTGCCTCTCTGGGCAGACTGTCCTGATGGCCTTTCCAGGGTCTGGGGTTGGGGGGGAACCTGAGAGCCTGGCCGTCAGTCCCGC-CTGGAGGAATCACTCA----GCCTGGAGTGGGCTCCACCTCC-TTCCCTACCCCTCCCC-AAGGTGTGGGACTCTGTGCCTCAAGCTCTACCTTCCAGC-CGTCTAGGCTGAGCCCCCAGATGACAC-CCCAGAGCCTCCACAGAGCCCCG s canFam1.chr18 28845372 924 + 66173745 aaaaaaCCGGGAGAGGCGGTGGGG---CTGGCGGCCAGGACACCCGCCTGTGCTCGGGGCCAGCGGTGGGCCCACTGGCACTTCGTGCTCATTTATTATTTACACCTCGACGTCCATGCATATTTCATAACGCAAGCAAGGAACAGAAAGGCAAGGCAAGAAGCTAACATGATGGGACAGGGAGTGAAGGGAAGGAGAGCAGGGGCAGG---------GAGGAG-----------CCGCCACCATGATCTCCGAGC--CGGGGAGGCACCC---------------CAACCCACCAG----TGGGGGTGTCCCCCAGTCCCACAGAGGGGACCCATCTCTGAGGCTGGCACCCGA-----------TCAGAGCATATGGTGGGCAAAGCGTGTCT---GCCCTCCTGCCT-GGAGCTC---------------------------------------CCTGGGCTGGATGGGG--GTGCTGGCCTGGCCGCTAGTGGGACATGTCCATCCGGTCACCAGCC-------AACTTCG--------------CCCTGGAGGACCTGGCCTGGCCCTACCTTCC----------------TCCTTCCACCTG---------------------CCAGCCTTGGGGTGGGGCTCCCTGCT-------TGGGTGCATCGGGGAGGGAGCAGGAACCCC--AGGTCTTCAGGGAC-CATGCCTTGTCTCC----------------CTGCAAAGTTTT-GCTTGTGGGGGAGGGGCATGCAATGATGCCGTCCCCCCTTTGGCCGAGCCC-CTCTCCACCTGCCCCGAGACGGACACCCCAGAACCCCACTCAGCATCCACGTGCACGCAAGCACAGGGCAGCTCACCTCTAGCCCAG---GAGAAGAACGC-----CATGGGGCCAGACTTCCCTCTCCTCCATCCATCTGGACAGAC-----------CCGGACAGGTGCTTTGCGGTGGGGGGGA----GGGGCCTTGGAGGCTGGTCCTGG---GGTGGGGCTGCCCATCCCACCTGGAGGGA---CGACCTCC-----------CTCCCC-AGGAAATGAGATCCTG---------------CCTGCTGT-GATCCTGGCCGAGCCCTCC-ACGACACGCCCAGAGC--CCGCAGGGCCCCG a score=73836.0 s hg17.chr17_random 1590635 883 + 2618010 AGGCTGCCCCGGGCTATCTGCCAAGGTCCAGCCAGGGGAGGGATCCCAGCTCTCCCNACTGGTTCCAGCCCAGNGCCCNACGTGGCCTCCTGATGTGGCTCCCAAACNCAGCCNTTCAAAGCCACTCACTGTGACGGACACAGGAGGAATGCCACCTCCNTCATCCAACGTGAGGACAAAGGATGGAGCCAGGCCGTCAGCAGTGTGAGTGTGTGAAACTGCTCAGCCCAGAGGGTTCAGCTTCTGCTTCTCAGGGGACAGAGGCACCAACTTTTANCCAAACACTGGAATAGAANGGAAGCTCCGTCTGTCTGTCCCTGGGTTAACAGCTATTGAATGATGGACAGAGGGTACATGTCTACAGAGGGTACAGAGGGANTTTATCAATGTCTCTGTTGACTATTGATGACAATTGGATTTTTAAAANGNCCNTAGGGCACNAGNTNGGGTTTCACTCTATAGAAATCGCACCTTAATAAATCTGAGCGAAAAATCTTAAGGAANGGACAAAGGGATGGGNGACAATCTGTCCATTCCCCTGTCTCCAGATGGCCCAGCCCGTGAATGATCTGGTCATCCATTCTACCGGCCATCCCTCCTGTCCCCTCAGGACAGACCCAGCTTTTGGCTCTGTTTCTACAGAGATCAATGGCACCTCCCCACTGTCCATGGCTCCTCACAGACAGGCCCAGGAGACCATGTGGGCCAGGCCCCAACAcaggcagacccagcgtgcagagcccacctcaccgaggcaggagaaggcggggaagacnttcctggaggaggtgcattttggaggctacataggcgtccactaagtagaaagggatggagaggctggtgcaagctgaggagcctgggtaaggCTGTGGCATGAGGC s panTro1.chr19 78957967 865 + 82489036 AGGCTGCCCCGAGCTATCTGCCAAGGTCCAGCCAGGGGAGGGATCCCAGCTCTCCC-ACTGGTTCCAGCCCAGG--CCCACGTGGCCTCCTGATGTGGCTCCCAAAC-CAGCC-TTCAAAGCCACTCACTGTGACAGACACAGGAGGAATGCCACCTCC-TCATCCAAGATGAGGACAAAGGATGGAGCCAGGCCGTCAGCAGTGTGAGTGTGTGAAACTGCTCGGCCCAGAGGGTTCAGCTTCTGCTTCTCAGGGGACAGAGGCACCAACTTTTA-CCAAACACTGGAATAGAA-GGAAGCTCCGTCTGTCTGTCCCTGGGTTAACAGCTATTGAATGATGGACAGAGGGTACATGTCTGCAGAGGGTACAGAGGGA-TTTATCAATGTCTCTGTTGACTATTGATGACAATTGGATTTTTAAAAG---CCTAGGGCAC-AGT--GGGTTTCACTCTATAGAAATCACACCTTAATAAATCTGAGCGAAAAATCTTAAGGAA-GGACAAAGGGATGGG-GACAATCTGTCCATTCCCCTGTCTCCAGATGGCCCAGCCCGTGAATGATCTGGTCATCCATTCTACCGGCCATCCCTCCTGTCCCCTCAGGACAGACCCAGCTTTTGGCTCTGTTTCTACAGAGATCAACGGCACCTCCCCGCTGTCCATGGCTCCTCACAGACAGGCCCAGGAGACCGTGTGCGCCAGGCCCCAACACAGGCAGACCCAGCGTGCAGATCCcacctcaccgaggcaggagaaggcggggaagac-ttcctggaggaggtgcattttggaggctacataggcgtccactaagtagaaagggatggagaggctggtgcaagctgaCGAGCCTGGGTAAGGCTGTGGCATGAGGC a score=71443.0 s hg17.chr17_random 1591518 766 + 2618010 ATAGGGNAGCTGGAGGATGTGGCCTAGACGGGGCCAAAGGGGACCCTGGGGAA---GAGTCAGGGAGAGCCTGTCCACCNTTGCTGAGGAATC------------------TGGATTCTAT----------------------CCACTGGGAGCACGGGGGAGCTTTGAGCAGGAAGCACCAGGACTGACTCCGTGGGTGGGAAACTGGGCAGAGACAGAGGGGGGCACACAGCCAGGGGCANGGGGCCCAACGGGGACTAGGNACCGTAGCCCTGTGAGAGACCACAGTGGTCAGGGCCA-----AGGATGGGAAGACGAGAACTGGGGGGGCCCCTGAAAGTGGAGG---TGAGGGGTCANGGATGGTACCCA---GGTGTGGGCACAGGAG--------------------GGCAGGGGCACTCCAGAGGCAGGAATGGAAGAGCCACGGAGGGACTG-------AGTTCTGTGCATGTCGATTCCCGGCGCTGG---------------CAGGGCTGCCGGGGGACTCGTCCAGAGAGTACGGGGACATGGACACAGGCACCATCATCACTCCGTGGTGGAC--AAAGCGACAGG----CTGGCTAAGCAGAG--GGACAGG--CAGAGGACAGGATCCTGGGAAGCACCCTCGGACGTGGGCAAGCAGAGGTCCTAAGCCAAGGGTCCTGGCCGGGGAGGACAGGGAGGTCAGGAAGCCACAGGGGGGTATCCGAGGACGCCGAGGGCTGTGAAGACACTGAACAAAGCGAGACCAAAGGTGGCAGACAGTGGCCAGACCACGATGACCAGGCACAAAGNGCTTCAGAGCACGGCAAGGCTGAGAGCCGGAGTACAGGATGTGCCTA s panTro1.chr19 78958832 760 + 82489036 ACAGGG-AGCTGGAGGATGTGGCCTAGACGGGGCCAAAGGGGACCCTGGGGAA---GAGTCAGGGAGAGCCTGTCCACC-TTGCTGAGGAATC------------------TGGATTCTAT----------------------CCACTGGGACCACAGGGGAGCTTTGAGCAGGAAGCACCAGGACTGACTCCGTGGGTGGGAAACTGGGCAGAGACAGAGGGGGGCACACAGCCAGGGGCA-GGGGCCCAACGGGGACT-GGGACCATAGCCCTGTGAGAGACCACAGTGGTCAGGGCCA-----AGGATGGGAAGACGAGAACTGGGGGGGGCCCTGAAAGTGGAGG---TGAGGGGTC-GGGATGGTACCCA---GGTGTGGGCACAGGAG--------------------GGCAGGGACACTCCAGAGGCAGGAACGGAAGAGCCACGGAGGGACTG-------AGTTCTGTGCGTGTCGATTCCCGGCGCTGG---------------CAGGGCTGCCGGGGGACTTGTCCAGAGAGTACGGGGACATGGACACAGGCACCATCATCACTCCGTGGTGGAC--AAAGCGACAGG----CTGGCTAAGCAGAG--GGACAGG--CAGAGGACAGGGTCCTGGGAAGCACCCTCGGACATGGGCAAGCAGAGATCCTAAGCCAAGGGTCCTGGCCAGGGAGGACAGGGAGGTCAGGAAGCCGCAGGGGGGTATCCGAGGACGCCAAGGGCTGTGAAGACACCAAACAAAGCGAGACCAAAGGTGGCAGACAGTGGCCAGACCACGATGACCAGGCACAAAG-GCTTCAGAGCACGGCAAGGCTGAGAGCCGGAGTACAGGATGTGCCTA s danRer1.chrNA 177021949 813 + 390413307 ATCGGGGAACTGGAGAGTCAGAACTGGACAGAACCAATGGGGACACTGGAGAGTTCAAACTGGAGGGAACCAGTCAGG--GCACTGGGGAATCAGATCTGGACAGAACCAGTGGAGGCAATAGAGAGTCAGAGCTAGACACAACCAGTGAGAGCACTGGAGAGTTTAAACTTGAAGGAACCAGTCAGGGCACTGAGGAAACAGAGCTGGACAGAACCAGAGGGGG-----TAGTGGAGAGTC-AGAGCTTGACATAACCA----ATGAGAGCACTG-GATATTCAGAGCTGGACAGAACCAGTAGGGGCACTGGAGAGTCCGAACTGGAGGGAACC-----AGTCAGGGCACTGGGGAATC-AGAACTGGACAAAAGCAGCGGGGGCACTAGAGAGTCATTGCTGGACATAACCAGTGGGGGCACTGGAGAGTCTGAACTGGAAGGAACCAGTGGGCACTGGGGAATCAGAGCTGGACATAACCAGTGAGGGCACTGGATATTCAGAACTGGACAGAACCAACGGGGCACT-----GGAGAGTCAGAACTGGTGGGAACCAGTAGGGGCAC-------TGGAGAATCAAAACCAATATGGGCACTGTAAAGTCAGAGCTGGACAGAACCAGTGG---GGGCACTGGAGAGTCCGAACTGGAGGGAACCAGTCGGGGCACTGGGAAAACAGATCTGGACAGAAGCAGCGGGGGCACTAGAGAGTCAGAGCTGGACAT----AACCAGTGGGGGCACTGGAGAGTCTGAACTGGAAGGAACCA------GTGGGCAATGGGGAATCAGAGCTGGACAGAACCAGTG------GGTGCACTG-------GAGAGTCAGAG--CTGGATGTAACCA a score=303287.0 s hg17.chr17_random 1592284 3743 + 2618010 AAACCCCTCACCCTAAATGCCCCTGAAGACAAAGCACAGGTCATCCACGCTGCAGGGCCCCCCAAGGAAGGCGGCTCCCAGGCCTCAGGCTCAGCTACCCAGCCTGGAGCAGGAAGCCCCTTAGCAGGGGAGTGGGCTGTCAAGCNCCATTGCCTCAAGCCAGAGGGCTCcaaagtgtgcctggggaccacncgagggtccctgagagccctccaggggttcntcaaggtcaaagttacatgcatttttaacactgagccaatttgccgcntttcaccgagcnggactctcgctgtcggcccaaacgcaatggcagaaggactgtgggcTGACAGGGTCAGGGCCTCAGCCACCGCACTCCTTGCCGCACGCATTTGCAGAGGGAAAAGGGAGTtgaacaaagtgagcctgtcactccagggaaaagaaatgatggtctttgnttatcanatgataaaatctattctttttttttttttttttttttttngagacagagtcttcatctgtcacccaggctggagtgcagtggcatgatctcaactcactgcaacctccgctccnccaggttcaagcaattctcccacttcagcctcccaagtagctgggattacaggtgcccaccnaccacacccagctaatttttgtanttgttagtagagancagggtttcaccatgttggccaggctggtctcgaacccctgnnacctcaagtgatccgcccaccttggctgcccaaagtgctgggattacaagcatgagccaccacgccttgccaaaatctactctttcaaagagaaattagaatttggggaaatgttatccaccacag------agagcttgacagcctcccaatagttccagactttgctgatgagaacagagatggttttaacaagtatgatttttgatactgcagagcaaaaattgttttgatatggtagtacatttttttccagaccactgaggncacaatgatacaagatcatatgtggctaaaagatccattcaaagtgcaagacagaccaggggattttaggataacagagcaaaaacattcattaatacgctttccgtttccatattgcaactaacccttgagaaaccggtacnttgtgaagtgtcagtgcagtatcaaagaggaaaagccacCNTCCCCAGGCAGGGCgcaggagcagctacgagattccagctgtcttnctatcaagccagaagttaanggagatttgcagaaatataaaaccatgccacttttttttttgctttggaaaaaatacatttcatcataaatnatttatgccaacatgtaatgactatgatctttactgaat---taaATAtttttctttttttttttttnangnantnggagtctcngttnctatcgcccaggctggagtacagntgacacgatcttggtttactgcaacctctgcctcccggattcaagtgatactcctgcctcagcctcctgagcagctggaattacnaggcacacaccaccatgacgggctaatttttgtatttttagtnangnangacnggggtttcaccatgtcgcccaggctggtctcgaactcctcgccccaagcaattcaccctcctcggcctcccaaaatgctgggattatagatgtgagccaccatacctggccCGTtcttttgcatcctttataataagctgagaaagcaccttcctgagttctgtgagctgttctaggnaaattctcaaacccaggaaggaggctgtgggaaaccncnggtgtaaagccagtcagaagtgtaggtggccaaggccaggcacggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcatgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccatctctactaaaaaaaaaaaaaaaaaaatacaaaaaattagccgggcatggtggtgggcacctgtagtcccagctactcgggaggctgaggcanggagaatggcgtgaacccgggaggcggagctggcagtgagctgagatcgcgccnaccgcactctagcctgggcgacagaatgagactccatctncnaaaaaaaaaaaagaagtgtaggtggccaaaactcacaactggtgtctagagaaggggcagtcttggagcaaaagcttcagcctgtgcagtgtgacactacctccaggtagtggcgaagttgaattgaatcagagaacacccagctggtgtTGAGAGTAGGGAGGAAGCCCACTCTCCTATTAAAAGAGACACAGCTggccaggntgcggtggctcatgccntngcaatcccagcactttgggaggcttaggcgggcagatcacgaggntcaagagatcgagaccatcctggccaancatgngtgaaaccccatcntctactaaaagtacaaaaattagccaggtgtggtggtgcgtgcccgtagacccagctactcaggaggttgaggcaagagaatcacttgaacctgggaggntggaggttgcagtgagctgagatcgcatatggaanctnccagcctggtgacagagcaagcaagcctccgtct----------aaaaaaaaaaaaaagaCACTGTGCATTTGGTGTCAGGAGGAGAAAAACACCTGGGAGCCTCTCCCCAGCTCCCAGGTGAAATCACGCTGATGGGGTTATGTCAAGGTCATACTTCGCTTCTTGGGTTCATTCTCCAAAGCCGGCATCTGCAGACCATGTCGAGGTCACACTTCCCTTCTTAGGTTCATTCTCCAAAGCCGGCATCTGCCGACCATGTGGAGCTCACACTTCCCTTCTTGGGTTCATTCTCCAAAGCCGGCATCTGCCAGATTTCCGCTAGTGTTTCCCACCTCGGTCTGTGTCCGGTCAAGTCCTGTGCCCCTGAATCTGGTGACCCTCAGCCCTCCTCCCCAAGGAATAAACCCCCCAAAGCAGACCCAAA-GGTCCCGCCTTGCGCTGTCCTTGCAAGGAAGAGAGAAATGGCAGCAAAACTAGCCCAGATCCTGTTTTCTTCCTCGCTATGTGATGCTGTGCTGANGTataaataaatatataaataaatgaataaTTTAGGTTTTTCTAAATAAGTAATGAAAAATGGATGTGTGCGTCAGTCATAAC--TGTTTATGGACTAGAACTGCAGTTAATAGTTGGTTAAGAATAAAATGTGACAAGAATTAATGGAAATTTTACATTCACAATTAAATTTGAGATCTAATTAAAAAAAAAAAAGCCACCGCTGGATCTGACATACTCAGGTCATACCTGCTGGGTCTCCCCAAGACGCCTTCCTCCCTCCCACGACCCCGACAAAGGGGCTCCTTGTCCTCCTGTTCAAAGACATTCATGTGGCCTCTCATATCAATATCACTACAGAGGAACAGTCCCCTCTCTCAGCGACAGACCCCCACAACCCTCGAAAACAATGGGGGAGACTGGGGGTCTTAACNCNCNCNAGNCACCACCTCCACCACCAGAATCTGTGCATGGCCTCTGACCTTNTGAATCTTAGCCCCCATGACCTCCTCCTCCCACTGCTCTGCATAAGCCAGCATCTCAGGTACCCCCAAATCTCACAGGAAACCTCACAGAGCACAGAGAGCCCCGGACAACACTCACTCCTCCCTCAGCCACTGTCCTGGACCCCACCAAGCCGCACCGGCAGCCCAGTCCATCATCCCTCCCCGGTGCCCTGTGTCCTATAGTGTTTGGTGTCCTGTTTTCTGGCT s panTro1.chr19 78959592 3625 + 82489036 AAACCCCTCACCCTAAATGCCCCTGAAGACAAAGCACAGGTCATCCACACTGTAGGGCCCCCCAAGGAAGGCGGCTCCCAGGCCTCAGGCTCAGCTACCCAGCCTGGAGCAGGAAGCCCCTTAGCAGGGGAGTGGGCTGTCAAGC-CCATTGCCTCAAGCCAGAGggctccaaagtgtgcctggggacc-cccgagggtccctgagagccctccaggggttc-tcaaggtcaaagttacatgcatttttaacactgagccaatttgccgc-tttcaccgagc-ggactctcgctgttggcccaaacgcaatggcggaaggactgtgggcTGACAGGGTCAGGGCCTCAGCCACCACACTCCTTGCCGCACACATTTGCAGAGGGAAAAGGGAGTtgaacaaagtgagcctgtcactccagggaaaagaaatgatggtctttg-ttatc-gatgataaaatctattctttttttttttttttttttttt--gagacagagtctccatctgtcacccaggctggagtgcagtggcatgatctcaactcactgcaacctctgctcc-ccagattcaagcaattctcccacttcagcctcccaagtagctgggattacaggcgcccacc-accacacccagctaatttttgta-ttgttagtagaga-cggggtttcaccatgttggccaggctggtctcgaacccctg--acctcaagtgatccgcccaccttggccgcccaaagtgctgggattacaagcatgagccaccacgccttgccaaaatctactctttcaaagagaaattagaatttggggaaatgttatccaccacagagagctagagcttgacagcctcccaatagttccagactttgctgatgagaacagagatggttttaacaagtatgatttttgatactgcagagcaaaaattgttttgatatggtagtacatttttttccagaccactgagg-cacaatgatacaagatgatatgtggctaaaagatccattcaaagtgcaagacagaccaggggattttaggataacagagcaaaaacattcattaatacgctttccgttcccacattgcaactaacccttgagaaaccggtac-ttgtgaagtgtcaatgcagtatcaaagaggaagagccgcC-TCCCCAGGCAGGGCgcaggagcagctacgagattccagctgtctt-ctatcaagccagaagttaa-ggaaatttgcagaaatataaaactatgccacttttttttttgctttggaaaaaatacatttcatcataaat-atttatgccaacatgtaatgactatgatctttactgaattaataaatatttttcttttttttttt-------agatggagtctcg--ttctatcgcccaggctggagtatag-tgacacaatcttggtttactgcaacttctgcctcccggattcaagtgatactcctgcctcagcctcctgagcagctgggattac-aggcacacaccaccatgatgggctaatttttgtatttttagt----agagaca-gggtttcaccatgtcgcccaggctggtctcgaactcctcgccccaagcaattcaccctcctcggcctcccaaaatgctgggattatagatgtgagccaccacacctggccCGTtcttttgcatcctttataataagctgagaaagcacctttctgagttctgtgagctgttctagg-aaattctcaaacccaggaaggaggctgtgggaaaccctt--tgtaaagccagtcagaagtgtacgtggccaaggccaggcacagtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcatgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccatctctact------aaaaaaaaaaaaatacaaaaaattagccgggcgtggtggcgggcacctgtagtcccagctactcgggaggctgaggca-ggagaatggtgtgaacccgggaggcggagctggcagtgagctgagatcgcgcc-actgcactctagcctgggtgacagaatgagactccatctcaaaaaaaaaaaaaagaagtgtaggtggccaaaactcacaactggtgtctagagaaggggcagtcttggagcaaaggcttcagcctgtgcagtgtgacactatctccaggtagtggcgaaattgaattgaatcagagaacacccagcc-gTGTTGAGAGCAGGGAGGAAGCCCGCTCTCCTATT-AAAGAGACACAGCTggccagg-tgcggtggctcatgcc--tgcaatcccagcactttgggaggcttaggcaggcagatcacgagg-tcaagagatcgagaccatcctggccaa-catg-gtgaaaccccatc-tctactagaagtacaaaaatcagccaggcgtggtggcgcgtgcctgtagacccagctactgaggaggttgaggcaagagaatcacttgaacctgggagg-tggaggttgcagtgagctgagatcgcacatggaac--tccagcctggggatag----agcaagcctccgtctacaagaaaaaaaaaaaaaaaaaaaGACACTGCGCATTTGGTATCAGGAGGAGAAAA--------CAGCCTCTCCCCAGCTCCCAGGTGAAATCACGCTGATGGGGTTATGTCAAGGTCATACTTCGCTTCTTAGGTTCATTCTCCAAAGCCGGCATCTGCCGACCATGTGGAGCTCACACTTCCCTTCTTGGGTTCATTCTCCAAAG----------------------------------------------------------CCGGCATCTGCCAGATTTCTGCTAGTGTTTCCCACCTCAGTCTGTGTCCGGTCAAGTCCTGTGCCCCTGAATCTGGTGACCCTCAGCCCTCCTCCCCAAGGAATAAACCCCCCAAAGCAGACCCAGACGGTCCCGCCTTGCGCTGTCCTTGCAAGGAAGAGAGAAATGGCAGCAAAACTAGCCCAGATCCTGTTTTCTTCCTTGCTATGTGATGCTGTGCTGA-GTataaataaatatataaataaatgaataaTTTAGGTTTTTCTAAATAAGTAATGAAAAATGGATGTGTGCGTCAGTCATAACTATGTTTATGGACTAGAGCTGCAGTTAATAGTTGGTTAAGAATAAAATGTGACAAGAATTAATGGAAATTTTACATTCACAATTAAATTTGAGATCTAATTAAAAAAAAAAAAGCCACCGCTGGATCTGACATACTCAGGTCATACCTGCTGGGTCTCCCCGAGACGCCTTCCTCCCTCCCACGACCCCGACAAAGGGGCTCCGTGTCCTCCTGTTCAAAGACATTCATGTGGCCTCTCATATCAATATCACTACAGAGGAACAGTCCCCTCTCTCAGCGAGAGACCCCCACAACCCTCGAAAACAATGGGGGAGACTGGGGGTCTTAA----CCCCAG-CACCACCTCCACCACCAGAATCTGTGCATGGCCTCTGACCTT-TGAATCTTAGCCCCCACGACCTCCTACTCCCACTGCTCTGCATAAGCCAGCATCTCA-GTACCCCCAAATCTCACAGGAAACCTCACAGAG--CAGAGAGCCCCGGACAACACTCACTCCTCCCTCAGCCACTGTCCTGGACCCCACCAAGCCGCACTGGCAGCCCAGTCCATCATCCCTCCCCGGTGCCCTGTGTCCTATAGTGTTTGGTGTCCTGTTTTCAGGCT a score=5466.0 s hg17.chr17_random 1595055 57 + 2618010 CCGGCATCTGCCGACCATGTGGAGCTCACACTTCCCTTCTTGGGTTCATTCTCCAAA s panTro1.chr19 78962252 57 + 82489036 CCGGCATCTGCCGACCATGTGGAGCTCACACTTCCCTTCTTGGGTTCATTCTCCAAA a score=63786.0 s hg17.chr17_random 1596027 550 + 2618010 GGATCTAGGA-GCCAGGCTGCCTCACACACATCATGGGGTGGATTTGGACTGAGGTGGGGCCGCTGGGNCTGCATGGAG-------------NCCTGCAAAGCTGGACTCTGGTGCCGAAG------TTTGCCGA--CACCTACTCTGCTGTCCAGCCTGGAGACCGAAAGAAGAAGAGCT---------------------GGCCTGGGGCCCAGGAGCTGGAGTTTCCAGTCCAGTGGGATGACGAGGAGGATGGGGTGGANGGGGGAGAGCCCGGGCCCACCTGGAGAGCCCTGCT---------------------GTGCTCTGCTGTA---GGGCGTGTGAG----AGGGGCCACAGACTCACACGGACTCACAGGGCTTTGGACTTNCTTAGCAACC-----TGGAGAGGAGGGAGAGAAGGAGCAGAAGGAGGG------GATGGGAGGCCTCATGGAGTTCCTCAGGCCCTAGGGCCACCCTCAGACCAAGGCCACACCGTCCTGCAATCCAGCTGGCTGCTCTAAAGGGGCTTTGTGTTNCCCAACACCTAACCAGGTTC-CTCTTCCTCCAGCTTTGCTTCTGAGGTCTCCAGGCCGTGAGACCCTCAAATTTGAATCCTCCC s panTro1.chr19 78963217 545 + 82489036 GGATCTAGGA-GCCAGGCTGCCTCACACACATCATGGGGTGGATTTGGACTGAGGTGGGGCCGCTGGG-CTGCATGGAG--------------CCTGCAAAGTTGGACTCTGGTGCCAAAG------TTTGCCGG--CACCTACTCTGCTGTCCAGCCTGGAGGCCGAAAGAAGAGGAGCT---------------------GGCCTGGGGCCCAGGAGCTGGAGTTTCCAGTCCAGTGGGATGACGAGGAGGATGGGGTTGA-GGGGGAGAGCCCGGGCCCACCTGGAGAGCCCTGCT---------------------GTGCTCTGCTGTA---GGGCGTGTGAG----AGGGGCCACAGACTCAAACGGACTCACAGGGCTTTGGACTT-CTTAGCAACC-----TGGAGAGGAGGGAGAGAAGGAGCAGAAGGAGGG------GATGGGAGGCCTCATGGAGTTCCTCAGGCCCTAGGGCTACCCTCAGACCAAGGCCACACCGTCCCGCAATCCAGCTGGCTGCTCTAAAGGGGCTTGGTGTT-CCCAACACCTAACCAGGTTC-TTCTTCCTCCAGCTTTGCTTCTGAGGTCTCCAGGCCGTGAGACCCTCAAATTTGAATCCTCCC s canFam1.chr18 28846315 603 + 66173745 GGATCTAGAACGCTCCACTGCCTTG----------GCGATGGATTTGCACTGCAGCACATTTGTTCGG-TTTTATGGAGTATTGCACGAAAATGCTGTGAAATTAGGTTCTGGCACTAATATCACGCTCTGCCCATCCGTCTGCTTTTATGTCCGGTGTGGAGACTGAAAGGAGAGGGACCAGGGCGGGCGTGGGGCGGGAGGGCCTGGGGCC--GCGGCTGGAGTTTCCAGTCCA--GGGACGGAGGAGGGAAGCGAGCAGCAGAGGGAGGCTGCGGGGCTGTCGGGAAGGCGCGGCTCCCTGACTCCTGCCCTTCCTGGTGCACCGTTGGGCCTGGGCCTGCTGGTCCCCGGGGCTGGTCACTAATGC-CACCCGCAGAGAACTG--CTT-CTCAGGGACCAAAAAAggaggggaaggggagaagggg--gagggagggaaaagaggagggagagcaaagggagg-----aggggggggaggCACCCCTGGCCCAAGGCCACACCCTTTCCC--TCTGACAGCCTCTCTGAAGGGGGACCGGGGTTCTCCAAACTTCCGCCGGCTTCGCTCTCCCACCAGCTTCACTG-TGGGGTCTCTGGCCAGTGA-CCCCTCAGATGCAAATCTTCCC a score=0.0 s hg17.chr17_random 1596577 9 + 2618010 TGATCACCC a score=373.0 s hg17.chr17_random 1596577 4 + 2618010 TGAT s panTro1.chr19 78963762 4 + 82489036 TGAT a score=1045.0 s hg17.chr17_random 1596581 5 + 2618010 CACCC s panTro1.chr19 78963766 5 + 82489036 CACCC s mm5.chr11 118627612 5 + 121648857 CACAC a score=59999.0 s hg17.chr17_random 1596586 904 + 2618010 GCAGCCCcacacat-gcacataaacacacacatgtgcccacaaacatgaacacac-naatgcaaatgcacacacacgtgcacatg-----cacacactcacatg---cacacac-gccatgca-cacgcatgcacacatgcattcacactcacgtgcacac--gc----------------gcacacatgcacgcac--gtacacatgca----tgcacaca----tgcattcacacacatgcacacacacgtacacat------------gcacacacatgcacattcacactcacacatgcacactcacacg------------------cacat-----------------gcaca-cactcgcatgcacacaTGCACATGCGCCTCCAAGGCTGGCCCTTTCACGCAGCTTTGCTTGCCCA--GCTTCCTTCAGGTCCAGGTTCCCAAAGCCCTCCCCTGACCACAAAGTTTCCAGGCCGGCCTTGGGTTTGGCCCCNACAACGGAGGc---agagcc------agacaccac--ctcagagatggctcagtctacctgctgctgtacgaccaggtcagaaaggcccaaagaggccacatgatgccga----nggtcacctggcctgcctgagggagctgggtccaggctcagccctccaattcccggGGTCTCTTCCCAGACNCCNCA---GGAGGCCTGGTGGGCGGG-GGTTCTAGGGGCCTG-----AACTGTGAATGTGGGACACAGAGCTGGGCCAGGGTTCCAGAGCACAGGCTGCAG-------GAAGGGACCAGGCAATC----------CTGGAAGGAGGAAGAGCCCATAGCTGTCCATCCTGCTNTGTCTTCATGCACGAAGCAGGTGTCAGTCAGCTGGG-ACAGGCCATCTCGAACTNGGCAANCCACCCCNACTCNAAATACATGATTTTAAGTGAGCCCCACTCTGCAACTCTGGCCAACACAGCTATCNCGCANTTNTGTTTGCCTAGCTCGGAANGGGGAAAAAAAATA---TCAAG s panTro1.chr19 78963771 951 + 82489036 GCAGCCCcacacat-gcacataaacacacacatgtgcccacaaacatgaacacacacaatacaaatgcacacacacgtgcacatgca---cacacactcacatg---cacacac-gccatgca-cacacatgcacacatgcattcacactcacatgcacacatgcacacacacgtacacatgcacacatgcacacacatgtacacatgcacacgtgcacacacacgtacatacgcacacatgcacacaca-gtacacatgcacacacaagcgcacacacatgcacattcgcactcacacatgcacactcacacgcacacactcgcatgcacacacac-----------------gcaca-cactcgcatgcacacatgcacaTGTGCCTCCAAGGCTGCCCCTTTCACACAGCTTTGCTTGCCCA--GCTTCCTTCAGGTCCAGGTTCCCAAAGCCCTCCCCTGACCACAAAGTTTCCAGGCCAGCCTTGGGTTTGGCCCC-ACAATGGAGGC---AGAGCC------AGACACCAC--CTCAGAGATGGCTCAGTCTACCTGCTGCTGTACGAGCAGGTCAGAAAGGCCCAAAGAGGCCACATGATGCCGA-----GGTCACCTGGCCTGCCTGAGGGAGCTGGGTCCAGGCTCAGCCCTCCAATTCCTGGGGTCTCTTCCCAGA--CCCCA---GGAGGCCTGATGGGCGGG-GGTTCTAGGGGCCTG-----AACTGTGAATGTGGGATGCAGAGCTGGGCCAGGGTTCCAGAGCACAGGCTGCAG-------AAAGGGACCAGGCAATC----------CTGGAAGGAGGAAGAGCCCATAGCTGTCCATCCTGCT-TGTCGTCGTGCCCGAAGCAGGTGTCAGTCAGCTGGG-ACAGGCCATCTCGAA-TTGGCAA-CCACCCC-ACTC-AAATACATGATTTTAAGTGAGCCCCACTCTGCAACTCTGGCCAACACAGCTATC-CGCA--TTTGTTTGCCTAGCTCGGAA-GGGGAAAAAAAATA---TCAAG s mm5.chr11 118627617 842 + 121648857 AGAGACACATACACAGTACACAAAC-CACACACATACTCACACACA--GACACACACAGCATACATACACATA-ACATGAACAGACACTGCACACACACACATACCTCACACACAGACATATACCACACATACACATA-GCACACACACACACTGACACAC--AC---------CACATACACATATATGCACAGACAC---CACATACA----TACACACA----TACCT-CACACACAGACATATACC-ACACATATATACA-------GCACACATACACA---TCACACAC-CACATACACACATACATGCACAGACAC---------CACATACAACACTACACACACAGCACACCACACATACACACACACACACACACACCCCTGAGG------------------------GGACCAGGGCTTCCTTCTGGTGCACATTCCCAAAGCCCTCCCTCTACCTCAG----TTCAGGATA-CTCTCAGTCTGGCCCC-ATGATAGAGGC---CCAGCCTAGCAGAGCCAGCGCTTCTCGAGGATGGC-----------ACTCCTGT-----CAGGCC--------------AAGGCATCTAATGTCG------------------TGCCCAAG---GCTG--------------CCTCCTCCGTCCAGGCCCTTGTCCCAGG---------------CCTAATGGGGGTG-GGACCC--GACCCTGTCTATGACGGTACAAATGAGACATGGGGCTGAG-CAAGGCTCTGCAGAGCCGGCCACAGACACAGAGAAGAGGCCCGGGGTGCTGGGTGGCCGCTGGCAGGAGGATGACTCCA-----GTAAGGGAGGCT----------GCCCCGGGCAGGC----GTCAGCTGGGTCCTGGCCGACTTGAG-CTGGCAA-TGGTCCA-GCTG-AAATGGGCTATTTTAAATCCTCCCAGCAAAGCCTCTCAGGCCAACACA-CCATC-AGCA--TTCATTTGCCTAACTCGGAG-AGGTGGGGGGAATA---CCGAG s canFam1.chr18 28846918 608 + 66173745 ACAGCCCCCCACCC-GCGCA---------------------------------------------------------------------------------------CACACAC----------CAGA---------------------------GCACGC--AG-------------------------------------------------CGCCCCCA-------------------------------------------------GCCCAT----------TCGCCCCCGCTC---------------------------------TGCCG-----------------GCTC--CTCTC---------------------CCCCAGAGA--GGCCCTCTCCC----CTCTCCCCGTCCA--GCTCCCCGCCAG--------CCTCACGCCCACTGCTGGCCTCTGAGG-GCTGGACCAGCCCGAC-----GCCCC----ACGGAGGCCCGAGGCCC------GGTGCGCGC--ACTGGAGACGGT-CATGCAGCTCCCTGCTGT-CAGACAGCTC-----GGTCC----AAGCCGCCAGCTGCTCTCCCCAGCGCGCCTGGCCGGTCAGGG--------GTCCTAGAGGAGCTCTCTAACTCCCAGGGGCTCCTCCTGCC--CCCCACCCCCAGGCCTGATGGGGGGGAAGGGTCAGGAGCTTA--------GGATAGAGTAAGAGACACAGCTGGGTCA-GGCGTCAGAGCTCA-GCTGCAG-------GCGGGCACGGGGCCG------------CTGGA--GGGGACGCTTCCT-----GCCCACCTCGCA---------------GAGGGGGTGTCAGGCGGCCGGGACCAAGCCATCTCGAG-TTGGCCA-CCACCCA-ACCG-ATGTAGTTTATTTTAAGTAAGCC--------CAACTCTGGCCAGCACGGCCATC-TGCA---TTGTTTGTCTGAGTCACAG-GGGAGAGAAAAGCAGCCCCACG a score=72067.0 s hg17.chr17_random 1597490 196 + 2618010 AGGCAGGCGCTTCAAGTGC----AAATGTATCCAACTCCCAG-CAAAAGGTTGTGC---TGCGGGCCCACGGCCAGGCAGTATTCTGGGATTGGACCTCTTCCCTTGCCCTAAATTTAACCAGCTGGAAATCTTTTTTTAAGCTGCATCCTATTCNAACCTNTTTGAAAT-AAAGATTTGCCTTT--TAATGGGAAATCTGCATTCC s panTro1.chr19 78964722 194 + 82489036 AGGCAGGCGCTTCAAGTGC----AAATGTATCCAACTCCCAG-CAAAAGGTTGTGC---TGCGGGCCCACGGCCAGGCAGTATTCTGGGATTGGACCTCTTCCCTTGCCCTAAATTTAACCAGCTGGAAATCTTTTTTTAAGCTGCATCCTATTC-AACCT-TTTGAAAT-AAAGATTTGCCTTT--TAATGGGAAATCTGCATTCC s mm5.chr11 118628459 196 + 121648857 AGGCGAG-AATGAACCTGG----AAATGGTTGC-TCCCCCTG-CAAGAGGTTGTGTGCGGGCGGGCACACCGCCAGCCAGCGTCTGCGAATTGGACCTCTTCCCTGGCCCTAAATTTAGCCAGCTGGAAATCCTTTTTCAAG-TACATCCTATTC-AACCT-ATTGAAAT-CTAGACCTGCCTGTGGCAGAGGAGGGGCCGCCCGCC s rn3.chr14 105094102 200 + 112220682 AGGCAAAAGCTTAAAGTGTAATAAAATTTATCTAATTCACGATCAAGTGAAAATAC---TTTGGGCCCAGAGCCAAAGAATATTATTGGAGTGAACTTTTTTCAACACCCTAAATTTAACCAGCTGGAATTCTTTTTTTAAGAACCATCCTATTC-AACCT-TTTGAAATGAAAGATTTGCCTTT--TAGTGGGAAATCTGCATTCC s canFam1.chr18 28847526 184 + 66173745 AGGCTGGCGG-------GC----GGAGGCAGCGGGCCCTGGG---AGTGGAAACCT---GCCGAGCCCTGCCCGAGGCTCTGCTCCTGCACCGGGCCTGCTGCCCTGCCCTAAATTTAACCAGCTGGAAATC-TTTTTTAAGTCACATCCTATTG-AACCT-TTTGAAAT-AAAGATCTGCCTTT--TAATGGGAAATCTGCATTTC a score=0.0 s hg17.chr17_random 1597686 1 + 2618010 N a score=0.0 s hg17.chr17_random 1597686 1 + 2618010 N a score=63510.0 s hg17.chr17_random 1597687 433 + 2618010 ATTGTGGAGAAGGAANCC--GGCACCCTTGGCTCAGCCCGGCTCCTCCTGGCACGCGGCTTCCTGGTTTTGGCTGCAAACCT---AGGAA---AGCTCA-CATGTGCAGGGGTGGAGGCCCCTGACCGTCCAGGCCGCTGTCCCTGGGCTGAGGGGAC-ATTCTGAGATG---GGCACAGAGACTTTCTTAGGGAAAGCAGGAAATTAAAAG-CAACAGCAATGAAAAGACACTGTGCCAAGAAAATAAATAAGACATTCTTCAATTTTT---GCCCACGA---ACGTGCCCCACG--CATGGGAGCTGCGTGCGGCCCGTGGTCAGGCAGAAACACCCGCAcacaatggctgg-----gttcaaatctcgccctacccctcctagc--------tcgtgaaacatctctgtgtctcagtttccccatctgtaaatcagggg-tgaggacaacacctacctcccagggg s panTro1.chr19 78964916 432 + 82489036 ATTGTGGAGAAGGAA-CC--AGCACCCTTGGCTCAGCCTGGCTCCTCCTGGCACGCGGCTTCCTGGTTTTGGCTGCAAACCC---AGGAA---AGCTCA-CATGTGCAGGGGTGGAGGCCCCTGACCGTCCAGGCCGCTGTCCCTGGGCTGAGGGGAC-ATTCTGAGATG---GGCACAGAGGCTTTCTTAGGGAAAGCAGGAAATTAAAAG-CAACAGCAATGAAAAGACACCGTGCCAAGAAAATAAATAAGACATTCTTCAATTTTT---GCTCACGA---ACGTGCCCCACG--CATGGGAGCTGCGTGCGGCCCATGGTCAGGCAGAAACACCCGCAcacactggctgg-----gttcaaatctcgccctacccctcctagc--------tcatgaaacatctctgtgtctcagtttccccatctgtaaatcagggg-tgaggacagcacctacctcccaggag s mm5.chr11 118628655 448 + 121648857 TTTGTGAAG-------CCAGGGCGCACCTGGGCAGGCCACAGACCTCCTGGACGGCGGCCGCCCGGTTCTGGCTGCCAACCCCCAAGAAAATCAGCTCAGCAAGTGGAGGTGGAGGGTGGGCTGGCATTCAAGGCCACCGTCCCCAAGCTGAGGGGAC-ATGCTGAGGTGACTGCCACAGCAGCTTCTTTAGAGAAAGCAGGAAATTAAAAGACAGCAGCAAACACAAAATGCCGCGGCAGGA----AAATAAGACGTCTCCCAGGCTTTCCGTCTGGTGC---AAACGCCCAGCC--CATGGGAGCTGCACCAGGGACATGGAAAGACAA----GCCAGCAGGTCACTTCTGAGCCCCGTGCACATCTACCCTTGGCTCTGTGACCGGAGCTCTTCACAAGGAGACCCTAGGTCTCCATTTCACCACCTGCAAGTTAGGAGCTGACGCCCATACCTGCCATACCCTGG s canFam1.chr18 28847710 314 + 66173745 ATTGTGAAGAAAGAG-CT--AGCA---------------------------------GCCTCCAGGCTTTGGCTGCCAACCC---AGGGAAGAAGCTCA----GTGCGGGACACGCGCCCCCTCC---------CCGCAGCCCCC-GGCTGGGGCGCCGGTTCCCAGCCAGCGGGCACAGAGGCTTCCTCCGAGCTAGCTGGAAATTGAGAGCCAGCAGCGATGGGAAGGTGCCCTGCCAAGAAAATAAATAAGACGTTCTT-----------GCTCACGCGGGACGGGCCCTGCGATCACGGAG---------AGGCCACGG-----CAGCGCCACCAGC---------CTGG-----GCTCCAGCCCCGC------------AGC------------------------------------CCCAGCCGTCACTCTGGGG-TG--------------CTGCCGGGGG a score=5833.0 s hg17.chr17_random 1598120 71 + 2618010 ctgctacatagattgagttaatagtggtatagcacactggtaagagcacaggtggggccaaagaataaatg s panTro1.chr19 78965348 71 + 82489036 ctgctacacagattgagttaatagtggtatagcacATTGGTAAGAGCACAGGTGGGGCCAAAAAATAAATG s mm5.chr11 118629103 57 + 121648857 CCATAGCATGGACAAA---AGGAGGGGTCTGTC-------CAAGAGCTCAGGTGATTCT----GACACGTG a score=22869.0 s hg17.chr17_random 1598191 290 + 2618010 atagATGAAACGTGTTCTCTCCTGGAAATGGCTCACTACCGAG-TCATGCAGGA-GGGAGAGTCAGGAGTAGGGAGAAACCTTTAGTCCAGGTTCGATTCTGCGGCCTCGGGTGTGAGGCCGGTGCTATGC-AGGGGCTGTNGGGAACAAGGACATGGCCTTCACCA-----GCGTGGAGAGATGAGGCAGACGTGGAGG------------TGGACCCAAAGTGGGAGATGTCAGGGCA-----GACCTGGCAGTTNGGGGA-------------TGTCTTTAGGGACAAAAGG-GGACATGAGCCAACCC-CAAGGGNAACTAGGCAG s panTro1.chr19 78965419 287 + 82489036 ATAGATGAAATGTGTTCTCTCCTGGAAATGGCTCACTACCGAG-TCATGCAGGA-GGGAGAGTCAGGAGTAGGGAGAAACCTTTAGTCCAGGTTCGATTCTGCGGCCTCGGGTGTGAGGCCGGTGCTATGC-AGGGGATG-CGGGAACAAGGACATGGCCTTCACCA-----GCGTGGAGAGATGAGGCAGACGTGGAGG------------TGGCCCCAAAGTGGGAGATGTCAGGGCA-----GACCTGGCAG-TCGGGGA-------------TGTCTTTAGGGACAAAAGG-GGACATGAGCCAACCC-CAAGGG-AACTAGGCAG s mm5.chr11 118629160 260 + 121648857 ACA-ACAATATTCAGTCTCCCCCCTGGATGGGCTGTCACCCAGACCATGAAGGACAAGGGAGC------TGGGGAGAAATGCCCCTTTCATGTTTGGT------GACCCTGGTGCAAACCC------CTGCAAGGGGCTG-TGGGAACTCAGGTATTAACTACCTTACGATCTCTTTGAGAAGTGAGGCAGATAGCGGGA------------AGACACTAAAGTG---AACCCCA---CA-----GCCATAGCAG---------------------------GGGGGACAAAAGGTATACAGGAGCCAGCATGCAAGAGCGAGCAGACAG s canFam1.chr18 28848103 289 + 66173745 ATAAAGGAAACGCGCTCTC-CATGGGGAGGGCTTGTCACCAGA-GCACGGAACA-----------------------AACGTTCACCTC--GTTCGACTCCCTGAGCCCGGGTG-GAGGCCGG----CTGT--GGGGATG-GGGCCTGGTGGCCCTCAGCGACCTCACAATCTCTGTGGGAGATGCGGCAGACATCGGGGGTGGGGGGGTGTTGCACCTGCAGTGGAGAGCCCGAGGGCAGAGGGGACCCACCAGGGTGGGTACAGAGGCCCAGAGCAGCTGTGGGGATGAGGGC-ACCCAC---TTGGCCC-TGAAAG-AGCTAGGTGG a score=3109.0 s hg17.chr17_random 1598481 14 + 2618010 GCAGAAAGGGCAGG s panTro1.chr19 78965706 14 + 82489036 GCAGAAAGGGCAGG s canFam1.chr18 28848392 14 + 66173745 GCAAAAAGGGGGGG a score=170600.0 s hg17.chr17_random 1598495 1977 + 2618010 GACCCATCCTCCTGCAGACACACTAGGATATCAGACGATGACGGAGCCTGTGTTCTGGGCGCCTGGTCCAGATGGAGGCGATGCAGGTTGGTAGAGGCCAGGAGAGGNAGGTGGGCACTGtttcaggaccccnacgtgtgtagacaatttgattttcaaatgtatcacagaagtggtggctgggcctgtgcgaggtatgaggacccgatggagactctgaatgatggntggagaggaCCAGAGAAGACCGCCCATCGGCTGAGTCCCAGAGCGACTGGGGCATCTGATCCCTTGTCCCTTGTACAGGAGAGACAGTTGGGCAGCGTGCAAAGGAAGGCACCCTATGGGGACAGCCCTGAGGGCCCCAGCCAGCCCCAGACACTGGAGGGGGACATAGGAAACTGGGAGGCAGTCCAGGCACAGGGCCCTGTAAGCTGTGAGTTCCAAGGACAGGACTGCCCAGGGTAGAATCAGAGCATGGCCACCTCTGCACAGCAGATGCTGTCCGGGAGGGCACAGGGGAGCCTGGGCAGGGTGAGGGGTGCACATATGGAAAATGCGCCCAGCCGTACCTCTGTGGCACAGCTATCTGAGCACgtgtgcatgtgtgtgtgtgtacatgtgtgca----------------------------tgtgtgcgtgtgtgtacatgtgtCTGAGTGCACATAC--GTGTGCATCTGAGTGCATGTGCATGTGNTGCCTGTGTCTGAATGCACATGTATGCACATGTGCTCAAGACCAGGGAGGGCAGATCCTGCAGGCCAGCTGTAAAGAAGGAAGGGGGAGCCCTGGACTAGAGCAGATCTCAGGAACCCCAANATCAGGGACTCATTCTCTTCATTATAACCTCNGGGAGAAGAATTACAGAAAGTTATGAGNAATTGCAATCACTTCCTATGTGTGCCCAAGGTGTACGCACTTGACCGTACATATGTTACACCCTGAGGAAAATGTTCATTAGGATAGAATATTTGCATAATTATATGTCAAGCTGTACACTATTTTGGTAGGNCAGATAGGGGGCTTCATGAGATGACCTTTCAGAGTTCTCGGGTTTCTTAGGGGCTATGAGGGGGNTGgaataatggccccacagatggccacatcctcatctccagaanctcaacccctgcttctgtgaaccctactctnctgtgaattcattgccttgcatggcagcagtcacaggagtcagttaaagatctggagatgggagattatccgggtgggcgggtgcgatcccaacgntccttagaagtggaagacggagngcaggaggggtcaggatgatgtgatggatggagctcatggangggcacnaangccaaggagtgccgcagcnctcgagaagctgggaaagccaaggaagcagatttcctgccctttgagcctccacagaggaacacagccctgctgacaccttcattttagccaagtctaacctccagattgtaagatgacaaatttgtagctgggcgcgngtggctcatgcctgtaatctcagcactttgggagactgaggcaggaggatcacttgagcccaggaattcaagaccagcctgggcaatgaagtgagaacctgtctctataaaacatTTTTTTAAATAaagataataaatctgtgttattttaagccacttaatgtgtagtaatttgttagggcagtaacaagtaactaaNCACAGACTGTGACTCTCCGAGCACTGGGAGTCTCTCTCCACCCTGCCACCATCCTTCCCAGGAGCTTCCTTTCTTCTGTCCAACCTCAGGACCTGCTCCCNTCAACAGACAGGAACTAAGGTGCACCATCGGGAGGCTGCACGCCATGAGTGTCTTAAGGGACAACACACCAGCAGAGACGCACGTGTGCCGCGGAGGTGGCAGAGGTACTCTGCGGATGGGAAGATGCATAGCTACTCAGGGCGTGCGTGGCCACACACTGTGNGCAATTCCNTACACCCACAATGCAGGCGGCTGGCCT s panTro1.chr19 78965720 1985 + 82489036 GACCCATCCTCCTGCAGACACACTAGGATATCAGACGATGACGGAGCCTGTGTTCTGGGCACCTGGTCCAGATGGAGGCGATGCAGGTTGGTAGAGGCCAGGAGAGG-AGGTGGGCACTGtttcaggacccc-atgtgtgtagacaatttgattttcaaatgtatcacagaagtggtggctgggcctgtgcgaggtatgaggacccgatggagactctgaatgatgg-tggagaggaCCAGAGAAGACCGCCCATCGGCTGAGTCCCAGAGCGACTGGGGCATCTGATCCCTTGTCCCTTGTACAGGAGAGACAGTTGGGCAGCACGTAAAGGAAggcaccctatggggacagccctgagggtcccagccagccccagacactggagggggacataggaaactgggaggcagtctaggcacagggccctgtaagCTGTGAGTTCCAAAGACAGGACTGCCCAGGGTAGAATCAGAGCATGGCCACCTCTGCACAGCAGATGCTGTCTGGGAGGGCATGGGGGAGCCTGGGCAGGGTGGGGGGTGCACATGTGGAAAATGCGCTCAGCTGTACCTCTGTGGCACAGCTATCTGAgcatgtgtgcatgtgtgtgtgtgcacatgtgtgcatatgtgtgcatgtgtacatgtgtgtgcgtgtgtgcgcgtgtgtacatgtgtCTGAGTGCACATACATGTGTGCATCTGAGTGCACGTGCATGTG-TGCCTGTGTCTGAATGCACATGTATGCACATGTGCCCAAGACCAGGGAGAGCAGATCCTGCAGGCCAGCTGTAAAGAAGGAAGGGGGAGCCCTGGACTAGAGCAGATCTCAGGAACCCCAA-ATCAGGGACTCATTCTCTTCATTATAACCTC-GGGAGAAGAATTACAGAAAGTTATGAG-AATTACAATCACTTCCTATGTGTGCCCAAGGTGTATGCACCTGACCGTACATATGTTACACCCTGAGGAAAATGTTCATTAGGATAGAATATTTGCATAATTATATGTCAAGCTGTACAGTATTTTGGTAGGA-AGATAGGTGGCTTCATGAGATGACCTTTCAGAGTTCTCGGGTTTCTTAGGGGCTATGAGGGgg-tggaataatggccccacagatggccacatcctcatctccagaa-ctcaacccctgcttctgtgaaccctactct-ctgtaaactcattgccttgcatggcagcagtcacaggagtcagttaaagatctggagatgggagatcatccgggtgggcgggtgcgatcccaacg-tccttagaagtggaagacggag-gcgggaggggtcaggatgatgtgatggatggagctcacgga-gggcac--aagccaaggagtgccgcagc-ctcgagaagctgggaaagccaaggaagcagattttctgccctttgagcctccacagaggaacacagccctgctgacaccttcattttagccaagtctaacctccagactgtacgatgacaaatttgtagctgggcacg-gtggctcatgcctgtaatctcagcactttgggagactgaggcaggaggatcacttgagcccaggaattcaagaccagcctgggcaatgaagtgagaacctgtctctacaaaaCATTTTTTTAAATAaagataataaatctgtgttattttaagccacttaatgtgtagtaatttgttagggcagtaacaagtaactaa-cacaGACTGTGACTCTCCGAGCACTGGGAGTCTCTCTCCACCCTGCCACCATCCTTCCCAGGAGCTTCCTTTCTTCTGTCCAACCTCAGGACCTGCTCCC-TCAACAGACAGGAACTAAGGTGCACCATCGGGAGGCTGCATGCCATGAGTGTCTTAAGGGACAACACACCAGCAGAGACGCATGCGTGCCGTGGAGGTGGCAGAGGTACTCTGCGGATGGAAAGATGCATAGCTACTCAGGGCGTGCGTGGCCACACACTGTG-GCAATTCC-TACACCCACAATGCAGGCGGCTGGCCT a score=5798.0 s hg17.chr17_random 1600472 28 + 2618010 GTGGGCTCTCACAAATACACACACACAC s panTro1.chr19 78967705 28 + 82489036 GTGGGCTCTCACAAATACACACACACAC s rn3.chr2_random 3759555 28 + 4341851 GCGGGCGCGCGCGTACACACACACACAC a score=10324.0 s hg17.chr17_random 1600500 33 + 2618010 GCACAGGTGTGCACGTGTGCAGGTGCCAGCTCC s panTro1.chr19 78967733 33 + 82489036 GCACAGGTGTGCACGTGTGCAGGTGCCAGCTCC s mm5.chr11 118631205 33 + 121648857 GCACACATGTGCAGGTTCACAGGTGACATGTCC s rn3.chr2_random 3759583 33 + 4341851 ACATACGTGTGTGTGTGTGCATTTGACAGTTCC a score=36710.0 s hg17.chr17_random 1600533 396 + 2618010 TTCCACCCAGCCCATCCCTGCTGGGAGCCAGAACGTACACCTGGACACCCAAGGAAGGGGGCGCTNGCACGTGTCCTTTCCACCC--TGGAGTCAGGTGCCAGCACCTCCCCAGATTCCCTCAGCCCCTCCCCAGTCACAGCTTGGANGTGTGCAGGCCCTGCTTGGAGGGCCATTCATCCGNCCTGGTTTCTGAGAAGA-GCTTTCGTGCCGTGGGCCTGTGTGGGCACCTGCACCCATGTGGACCTTCTGAAACCGGGAGGCTGTGCCAC-GTCTGTGGGTAGTTCGGTGCGCACACGCTGGATGGGCACACGTGTGTGGGCGCGTGCATGTGGGCATACAGTGGCACATGCGCACGTGTGACAGGGGCTAACAGGNTCCTAG----------------------------------------GCCTGAAGCCGCGTG s panTro1.chr19 78967766 392 + 82489036 TTCCACCCAGCCCATCCCTGCTAGGAGCCAGAACATACACCTGGACACCCAAGGAAGGGGGCGCT-GCACGTGTCCTTTCCACCC--TGGAGTCAGGTGCCAGCATCTCCCCAGATTCCCTCAGCCCCTCCCCAGTCACAGCTTGGA-GTGTGCAGGTCCTGCTTGGAGGGCCATTCATCCG-CCTGGTTTCTGAGAAGA-GCTTTCGTGCCGTGGGCCTGTGTGGGCACCTGCACCCATGTGGACCTTCTGAAACCGGGAGGCTGTGCCAC-GTCTGTGGGTAGTTCGGTGTGCACATGCTGGATGGGCACACGTGTGTGGGCGTGTGCATGTGGGCATACAGTGGCACGTGTGCACGTGTGACAGGGGCTAACAGG-TCCTAG----------------------------------------GCCTGAAGCCGCGTG s mm5.chr11 118631238 347 + 121648857 TGCCAC----CCCAATCCCACCAGGAGTGGGAGCACATGCCCAGTCCT-------GGGTGACAC--GCAGCAAACCTCCCGAACTCGTGGCCTCAAGCACCATCACTGCCACAGGTCCCA------------------------GGA-AAATGA-------------------------CCG-GCTGGTTTCTGAGCAAATGCTTTTGGGTGGTGGGCCTGCATGGAT-CCTCTGCCCACACAGACACTCACCATCAGTCTGGCTGTGTTGCTGTCTGTGAATAGCTAGGCGCAC-------------TCACACGC---------CATGCTTGTGGAAACA------CACATGCACATAGGTGACAGGAAGCTACAGGACCCAAGTTTCCACAAATTGTGAAGAGTCGGAGATTTAAAAAACAAAGTTTGTAACCTCATT a score=31699.0 s hg17.chr17_random 1600929 280 + 2618010 GAATCTCGGAATCCTGAGGCCTCCTTTCAAGCACTTGTGTCATCCCCTACTGAGGTCCCTGAGTCAC-CATGATAGTTGGTGCCTGGCCTCCG--------AGTTGCCAGCCCAGCCCAGCCCTGCTCCCCTGGGGGGTGGGAAGTTNCCCTCTGGAAGCTCCTGTCACAGCTGCACCTGAAAGGCCCAGCTCCCAGCNACANGGCCCTG-------GGGGACAGCAGTGAGGACCA----AGGNCCAAGGAAGNCTCCC--ATTTCCATGACAACAGC-AGGCAGGGATCATAGGagctgcc s panTro1.chr19 78968158 275 + 82489036 GAATCTCGGAATCCTGAGGCCTCCTTTCAAGCACTTGTGTCATCCCCTACTGAGGTCCCTGAGTCAC-CATGATAGTTGGTGCCTGGCCTCCG--------AGTTGCCAGCCCAGCCCAGCCCTGCTCCCCTGGGGGGTGGGAAGTT-CCCTCTGGAAGCTGCTGTCACAGCTGCACCTGAAAGGCCCAGCTCCCAGC-ACA-GGCCCTG-------AGGGACAGCAGTGAGGACCA----AGG-CCAAGGAAG-CTGCC--ATTTCCATGACAACAGC-AGGCAGGGGTCATAGGAGCTGcc s mm5.chr11 118631758 266 + 121648857 AAATCTGCAAGTCTTGAAGCTTTATCTCAGGTACCTCTGCC-TTCTCTACTAAGG--CCTGA-TCACACAGAATACTCAGAGTCTAGCCTCTAGGATCTGTAGTTGC--------------------------AGATATAGATAGGT-----CTGGAAGCCCCACCCACAGCCACACCTATGTGGTCCCACTCCCAGAGGCC-AGCGGAGTGGGGGTGGGGGGAGCAGTGAGGATAAGAAGAGAAGCAGAGAAG-CTCTCTGGTTTCCATGACAACAGCAAGACTGGGTTGCTATGAGCTGCC a score=13799.0 s hg17.chr17_random 1601209 150 + 2618010 agaatctgggagaggcacggaaagaccccccagagatcctcagagagaacgcggccccactggcaccttgnacctcaggcttctgccctccacaaccctgagtgaccacattcccgttgcttccagccacccgtgtggggtcttttgtta s panTro1.chr19 78968433 149 + 82489036 agaatccgggagaggcacggaaagaccccccagagatcctcagagagaacgcggccccactggcaccttg-acctcaggcttctgccctccacaaccctgagtgaccacattcccgttgcttccagccacccgtgtggggtcttttgtta a score=33052.0 s hg17.chr17_random 1601487 399 + 2618010 GGGCCACACGCCCAGCCCTGCTGTTGTCCTTGGNCAGGATGCCCTGTCATTCTGGTTCAAAAATGTGTCTGCTCCCTGCTGGAGCTGTACAAACACTTCCTCTCCGAGTTCGGAAGATCTTTCTGCATATCCGATTCTCAAGTTCAAAGAATGATGGAAACAAGAAACAGCCCCAAGCCTGAGATGGCAGAGCTGGAGCCAGCCCTCTTCCCTGGAGAGCCGGTGGAGGCTGGGCTGCAGGAGCCTGGGCAGAGGCTTGGGCCAGCACGGCGGCCCCACCCCTGAGGGTGAAGAGCAAGGCGGGAGGAAGAGGGCAGGAGCTGGGCTCTGCATGGTCACTGCAGGCTGACTCTCACCTGCTTTAGCAGGGNTCAAAAATATGAGCAGGTCTTTGGGAAT s panTro1.chr19 78968708 395 + 82489036 GGGCCACAGGCCCAGCCCCGCTGTTGTCCTTGG-CAGGATGCCCTGTCATTTTGTTTCATAAATGTGTTTGCTCCCTGCTGGGGCTGTACGAACAGTTCCTCTCCGAGTTTGGAAGATCTTTTTGCCTATCCGATTCTCAAGTTCCGAGAATGATAGAAACAAGATTCAGCCCCCAGCCTGAGATGGCAGAGCTGGAGCCAGCCCTCTTCCCTGGAGAGCAGGTGGAGGCTGGGCTGCAGGAGCCTGGGCAGAGGCTTGGGCCAGCACGGCGGCCCCACCC--GAGGGTGAAGAGCAAGGCGGGAGGAAGAGGGCAGGAGCTGGGCTCTGCATGGTCACTGCAGGCTGACTCTCGCCTGCTTTAGCAGGG-TCAAAAATATGACCAGGTCTTTGGGAAT a score=19732.0 s hg17.chr17_random 1601886 180 + 2618010 GAGAGCTGGCCAGGAATGGGAAAGCTCCTCCAAGAGGGAC-CAGAGGTGCCTGGGAGCAGGTTTCTAGAGTGTGTGTGctcgctcttgctctcgctctcctctctccn-----tctctc-----cnctctcctctctctctctctctctctctctctctctagctctctcgctgtctctAGCTGTCTTGCT s panTro1.chr19 78969103 187 + 82489036 GAGAGCTGGCCAGGAATGGGAAAGCTCCTCCAAGAGGGAC-CAGAGGTGCCTGGGAGCAGGTTTCTAGAGTGTGTGTGctcgctcttgctctcgctctcctctctcctatctctctctcgctctcgctctcctctctctctc-ctctctctctctctctctcgctctc--gctgtctctAGCTGTCTTGCT s mm5.chr11 118636762 159 + 121648857 GAAAGGTGGCCGGGATGGGGA-----CCTCAAAGAGGGAAGCAGCAGT--------GCAGGGTTC-------TTCCTGCACCTCCTCGCTCTC-CTCACCTGTCTCCC--TCCTCCCTC-----CTCCCCCCTCCCCCTCCCCCTCCCTC-CTCCCTCCTCCCCCCTC---CCTCCTCCCTCCTCCCTCCT a score=4187.0 s hg17.chr17_random 1602066 19 + 2618010 ACCTATCTCCCTCTGATAC s panTro1.chr19 78969290 19 + 82489036 ACCTATCTCCCTCTGATAC s mm5.chr11 118636921 19 + 121648857 CCCCCCTCCCCCCTCCTCC s rn3.chr9 43676955 19 - 113649943 ACCCCCTCCCCCCAAATAC a score=6250.0 s hg17.chr17_random 1602085 35 + 2618010 AGAAGGGAAGTGCTGGGAAGGGAAGGCATGGTCCC s panTro1.chr19 78969309 35 + 82489036 AGAAGGGAAGTGCTGGGAAGGGAAGGCATGGTCCC s rn3.chr9 43676974 35 - 113649943 AAAATGGAAGTGGTAATGAAGGAGGGTATGACTCC a score=62321.0 s hg17.chr17_random 1602120 709 + 2618010 TTTAAAtgatacagaangggggttagggaaatgctgggtagaggggggcatgatccctcgctagggccccacccccacnaggcctagggcaaggagtctaaatgttgcattttccaaaaccaccctggcccgccacgcccccatcccgggcctataaaaacccgagaccccagcgggcagacacacagaagctgctggagagcgggaggaacnacatgggcagaagaagacaagtggccaagcggccgggacatggacaggacgtggaggggagcacgtcggcagcccgactccacggaaaaaccatctcccttctggctccgccatctgctgagagctacttctctactcaataaaactttgcactcattctccaagcccatgtgagatccgattcttccggtccaccaaggcaagaaaccctgggataaggaaatccctctgtccttgtgataaggaagggggtctaattgagctggttaacacaagccgcctacagacggctaaactaaaagagcacccataacacacacccatcggggccnnccgagctgtaacactcacccctagacatggccttggggtcagagccccacagcctgcccgtcttatgctcccccagaggtttgagcagctgggcactgaagaagcaagccacactccctgtcacacgccctgtgagggggacaagggaacttttcccgtttca s panTro1.chr19 78969344 705 + 82489036 TTTAA-tgatacagaa-gggggttagggaaacgctgggtagaggggggcatgatcccttactagggccccacccccac-aggcctagggcaaggagtctaaatgttgcattttccaaaaccaccctggcccaccacgcccccatcccgggcctataaaaacccgagaccccagcgggcagacacacagaagctgctggagagcgggaggaac-acatgggaagaagaaaacaagcggccaagcggccgggacgtggacaggacgtggaggggagcatgtcggcagcccgactccacgggaaaaccatctcccttctggctccgccatctgctgagagctacttctctactcaataaaactttgcactcattctccaagcccatgtgagatccgattcttccggtccaccaaggcaagaaaccctgggataaggaaatccctctgtccttctgataaggaagggggtctaattgagctggttaacacgagccgcctacagatggctaaactaaaagagcacccatcatacacacccaccggggcctccggagctctaacactcacccctagacatggccttggggtcagagccccacagcctgcctgtcttatgctcccccagaggtttgagcagcggggcactgaagaagcaagccacactccctgtcgcacgccctgcgagggggacaagggaacttttcccgtttca a score=29192.0 s hg17.chr17_random 1602829 270 + 2618010 ---------CCTCTCCCACCCTTTCCTTCTCCCTGCACCCCTTCCCTCTGCCTCCTTATGTCCCCACAATCCTCCCTGCCATCATCAGGGTT--TCAAACAGACAGTCCCCTTGGCATGGAAGGAACCNAGNCAATGACAGTCATGTGACTCTAGGCAGCACCTTCAGCTCTAGAGACCCAGGTGCTTCCCCCTGGCCA-CGGTGAAGAGGGTGGAGATAAGGAAGGTCCCTTCTGAAGTCAGAACAGAAAAGTCCCCGAAGTTCCTGGTAAAACCCCCATC s panTro1.chr19 78970049 268 + 82489036 ---------CCTCTCCCACCCTTTCCTTCTCCCTGCACCCCTTCCCTCTGCCTCCTTATGTCCCCACAATCCTCCCTGCCATCATCAGGGTT--TCAAATGGACAGTCCCCTTGGCATGGAAGGAACCA--GCAATGACAGTCATGTGACTCTAGGCAGCACCTTCAGCTCTAGAGACCCAGGTGCTTCCCCCTGGCCA-CGGTGAAGAGGGTGGAGATAAGGAAGGTCCCTTCTGAAGTCAGAACAGAAAAGTCCCCGAAGTTCCTGGTAAAACCCCCATC s mm5.chr11 118636954 242 + 121648857 CCCTCCTCCCCCCTCCCTCCTCCTTCCTCCCCCCTCCCTCCTCCCTCCTCCCCCCT----CCCTCACAG-CCATCCTGTCATCATCATGGGTAGGGAAGAGGAAAAGAATGATGGCATCAAAGGAACC----------------TGTCCCTCAAGCC-----------CCCCAATGTTTCACACACCTCCCCTCACCCATCCTCCAAGTGGCAGGAAAT------GACACCACCCCAAGGCAGTGCA-CCATGTCCCCAAAGTCTCTGG-ATAATCCCCATT a score=32640.0 s hg17.chr17_random 1603099 353 + 2618010 GAGgcggtggctcaagcctgtaatcccagcacttggtgaggccgagccgggcggatcatgaggtcaggagttcgagatcagcctgaccaacatggntgaaaccccctctctactaaaaatacaaaacttagctgggcatggtggcgggcacctgtaatcccagctacccgggaggctgaagcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagcgagactgcgtctcaaacaaaaacaaaaaCCCACCACCCAAGTCGTTTTCCTCAAAAGCGTCAGTTTGGGGTTTGTCTATTTACAGATCCT s panTro1.chr19 78970317 352 + 82489036 GAGgcggtggctcaagcctgtaatcccagcactttgtgaggccgagccgggtggatcatgaggtcaggagttcgagataagcctgaccaacatgg-tgaaaccccctctctactaaaaatacaaaacttagctgggcatggtggcgggcacctgtaatcccagctacccgggaggctgaagcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagatcacgccactgcactccagcctgggtgacagagcgagactgcgtctcaaacaaaaacaaaaaCCCACCACCCAAGTCGTTTTCCTCAAAAGTGTCAGTTTGGGGTTTGTCTATTTACAGATCCT a score=18035.0 s hg17.chr17_random 1603452 122 + 2618010 CAGCATCACGGAAAGGATGGGG------GCAGCCATTCATTAATAACTCATAGAAGCCAG----GGGACCAATTAGAACGGGTTTTCCATTTCAGGGCACGCCGGAAAAGCCACCGGGACCTGGAGCAGCCA s panTro1.chr19 78970669 122 + 82489036 CAGCATCACGGAAAGGATGGGG------GCAGCCATTCATTAATAACTCATAGAAGCCAG----GGGACCAATTAGAACGGGTTTTCCATTTCAGAGCATGCCGGAAAAGCCACTGGGACCTGGAGCAGCCA s canFam1.chr18 28850077 131 + 66173745 CAGCACCTCAGGAAGGACGGGGTGGGCTGCGGCGATTCATGACTAACCCAGAGAGGGCAGCCCCTGGGCAGCTCCGAGTACGTTTTCTATTTTAGGATTTTCC-GCAAAGCCTCGGGGACCTGGCGTCGTGG a score=14728.0 s hg17.chr17_random 1603574 108 + 2618010 CTGCAGGAGCAGGTGGGGGTGGGTGAAATGGTGGTCAGAAAAAAAATCCCATAGAGGAGGAAACATTTCAAGAAAAGATATTAAAATAGAAAGCAATGATCCATTGCT s panTro1.chr19 78970791 107 + 82489036 CTGCAGGAGCAGGTGGGGGTGGGTGAAATGGTGGTCAG-AAAAAAATCCCATAAAGGAGGAAACATTTCAAGAAAAGATATTAAAATAGAAAGCAATGATCCATTGTT s mm5.chr11 118637452 41 + 121648857 CCATGGGGGTAAGGTAGGGTGG----------------------------------------ACATCT--GGAAAGGGTATGG------------------------- s canFam1.chr18 28850208 107 + 66173745 TTCCAGGAGAGAGTGGGGGAGAAAAAAATGGCAGTCAG-AAAGAAAACCTATAAAAAGGGAAACATTTCAATAAAAGGTATTAAAAGATAAAGCAGTGATACATTTTT a score=143142.0 s hg17.chr17_random 1603682 491 + 2618010 AAACACTTCACAT---TTTTCCCAAAGTTCC-CTGCAACTTGCTTCTGGAAGAGTAAATGGAAAACTTTGGGAACGTAATTTTAATTGTCTATTTCACACCCANCGTGTNCCTGCTCCCTCCCCGCCCCCA--CGCAGAAGCTGGGCCGTCTGCATCAAGACCCTCTTCCTCCAGCTCCAGCGGTGG--CAGTTG-TGGTGGAGTGACNCGGGGNACACAG-CAAGCNAGGCGGCAGCCCCATGCACGCGGGGAGCTGTCTGGCCTTCGCAGGGTT---TTTATTGTATTATTTAACACCCAAGCCTTTCAGCATGTGCCTGCCACACAGTTTATGCTCCCAGCAGAGGGACAATAACTGAAGGAATATTTGCAAAAAGNCNTGNAGTTAAGTAAATANTTTTATGCCCGTTAATGTAACGGCTCAGGAATGATGTGTTGGGGCAGG----CGGGCAGGGGAGCCAGTGC-TGCC----AATGTGC-AGAGGGTGACGGGGGTTCCT--------GTGGGCC s panTro1.chr19 78970898 482 + 82489036 AAACACTTCACAT---TTTTCCCAAAGGTCC-CTGCAACTTGCTTCTGGAAGAGTAAATGGAAAACTTTGGGAACGTAATTTTAATTGTCTATTTCACACCCA-CGTGT-CCTGCTCCCTCCCCGCCCCCA--CGCAGAAGCTGGGCCGTCTGCATCAAGACCCTCTTCCTCCAGCTCCAGCGGTGG--CAGTTG-TGGTGGAGTGACC--GGGGACACAG-CAAGC-AGGCGGCAGCCCCATGCACGCGGGGAGCTGTCTGGCCTTCGCAGGGTT---TTTATTGTATTATTTAACACCCAAGCCTTTCAGCGTGTGCCTGCCGCACAGTTTATGCTCCCAGCAGAGGGACAATAACTGAAAGAATATTTGCAAAAAG--CTG-AGTTAAGTAAATA-TTTTATGCCCGTTAATGTAATGGCTCAGGAATGATGTGTTGGGGCAGG----CGGGCAGGGGAGCCAGTGC-TGCA----AATGTGC-AGAGGGTGACGGGGGTTCCT--------GTGGGCC s mm5.chr11 118637493 418 + 121648857 AAACTTTTCTCAT---TCTTACC-AGGGTCT-CCGCAGTTTGCCTCTG--------AGTGGGAAGCTTTGGAAATGTCGCTTCCACCATCCAC----CGCTAA-AGGGGGCCTGCTCACTCCTGGCCCC---------------AGCATCCCATGTCTAGG------TCCTCCAGCC-------------------TGCTAGGCTGTCCACGGG--------------AGGCTGCA--------CACACTGGCAGC-ATCTGGCCCCCACAGGCTCACACGTACTGTATTATTTAACACCCAA-CCTTTCAGCTTGCATGTGGTACACAATTTATGTTCCCAACCAAGGGACAATAACCGAAGGGATATTTGCAAAAAG--CCA-CGTTAGGTAAATA-TTTCATGCTCGCTAATGTAATGG--CAGGCATG--GTGGAGGGGTGGGGGAACAGGAGGGGAGGAAAGTGCACGCC----AAGGGGT--GGTGGTGACAAGGGTCCCT--------GTGATCC s rn3.chrUn 51780062 411 + 75822765 AAACTTTTGTCAT---TTTTACC-AGGGGCC-CTGCAGCTTGCTCCTA-------AAGCGGGAAGCTTTGGAAATGTCACT-------TCCACTCAACGTTAA-AGGGGGCCTGCTCACTCCCGGCTCC---------------AGCATCTCACATCCCGG------TCTTCCAACC-------------------TGGTAGGCTGTCCACGGG--------------AGGCTGCA--------CACAGTGGCAGC-ATCTGGCCCCCACAGGCT----CATACTGTATTATTTAACACCCAA-CCTTTCAGCCTGCACGTGGTACACAATTTATGTTCCCAACAAAGGGACAATGACCGAAGGGATATTCGCAAAAAG--CCA-CGTTAGGTAAATA-TTTCATGCTCGCTAATGTAATGG-GCGGGCATG--GCGGAAGGGGGGA----CCGGAGGGGAGGGAAGTACACGCC----AGGGAAGGGGGGGGTGGCAAGGGTCCCT--------GTGATCC s canFam1.chr18 28850315 475 + 66173745 AAACACTTCTCATTTGTTTTCCCGAAGGTCTACCACTGGCTTCTTCTAGAAGAGCGGACGGCAGGCTTTGGAAACGTAACT----TGGTCTCCTGAGCAGCCA-CCCCGGCCTGCCCGCACCCCACCCCCATTTACAGAGGC--GGC--------------------TTTGCAGGCCCCTGCGGTGGCCCATCTGCCGGCGGGGGGACGGGGGGGACGGGGTTTAAC-GGGCGGGCGATCCGGACACGCGTGGAGCTGCCTGGCCTTCCCGGCG-----GGTCTTGTATTATTAAACACCCTA-CCTTTCAGCTTGTGTC-GCTGCAGAGCTGACGTTCCCAGCAGAGGGAGAGGAACCGAAGGAATATTTGCAAAAAG--CTG-AGTTAAGTAAATA-TTTTATACCCGTTAATGTGATGGCTC-GAAATGATGTGTGGGGTTGGC----CCAG--GGGAGGGGAGCACATGCTACGGAATGTGC-AGAGGGCACCGAGGGGTCCCCGCTGGCAGTGAGCT a score=4707.0 s hg17.chr17_random 1604173 32 + 2618010 TCAGCCAAGCTCTGCTGACTCTCAGCCCACCT s panTro1.chr19 78971380 32 + 82489036 TCAGCCAAGCTCTGCTGACTCTCAGCCCACCT s canFam1.chr18 28850791 32 + 66173745 GCGACTCTGCCCCCCGGATCCTCAGCCTCCCT a score=1988.0 s hg17.chr17_random 1604205 22 + 2618010 TTGAGGCCGCCTAGTCAGAGAG s panTro1.chr19 78971412 22 + 82489036 TTGAGGCCACCTAGTCAGAGAG a score=4667.0 s hg17.chr17_random 1604353 62 + 2618010 AGCCCCTCCGTCCCTGACACTGGCACCCTAGCATTCACCCACCAGCCCCTCCCCTCCCTGAC s panTro1.chr19 78982694 61 + 82489036 AGCCCCTCCCTCCCTGACACTGGCATTCTGGCATTCACCCACCAGCCCCT-CCATCCCTGAC a score=1424.0 s hg17.chr17_random 1604415 16 + 2618010 ACTGGCACCCTGGCAT s panTro1.chr16 27862441 16 + 101535987 ACTGGCACCCCGGCAT a score=7556.0 s hg17.chr17_random 1604431 56 + 2618010 TCACCCACTGTCTGGGGCAACTACCCTTTC-CTCCNACCACTGATGGGAC-GGCACCC s panTro1.chr16 27862457 56 + 101535987 TCACCCACTGTCCGGGGCAACTAACCTTTC-CTCCCACCACTGACGGGAC-AGCACCC s canFam1.chr18 28857672 58 + 66173745 TCACCCCCTGCCCTAGGGAGTCCCCCTCCCACCCTCGTTGCTGATGTGACAGGCACCC a score=281.0 s hg17.chr17_random 1604487 12 + 2618010 TGGCACCCTGGC s canFam1.chr18 28857730 5 + 66173745 -------CTGGC a score=391.0 s hg17.chr17_random 1604487 4 + 2618010 TGGC s panTro1.chr16 27862513 4 + 101535987 TGGC a score=30487.0 s hg17.chr17_random 1604499 284 + 2618010 CTACCAGTTTTGAGGGGAAAAAAATTAGAAATCCTTGGCCAAAGAGGGGACAAATTGAGCCTAAAATCAAGCCTTGGTGTCTCACTTTTTAAATCTACTTTTACCTTTTGTGTATTGGTTGTGTGATTTTTTGTGTACTCATTGTGTATGATTGCTGAATACACAATGAATACACAAAAGCTATAAATAGATTTAAAGAGAGAAAGCAAACCAAAA-CCCATCGGTAATCCACTGGAAAAACAAG--CCTCCAACTCTATTCAGAACATTGTCAATTAAAAGAAAAG s panTro1.chr19 78983276 284 + 82489036 CTACCAGTTTTGAGGGGAAAAAAATTAGAAATCCTTGGCCAAAGAGGGGACAAATTGAGCCTAAAATCAAGCCTTGATATCTCACTTTTTAAATCTACTTTTACCTTTTGTGTATTGGTTGTGTAATTTTTTGTGTACTCATTGTGTATAATTGCTGAATACACAATGAATACACAAAAGCTATAAATAGATTTAAAGAGAGAAACCAAACCAAAA-CCCATCGGTAATCCACTGGAAAAACAAG--CCTCCAACTCTATTCAGAACATTGTCAATTAAAAGAAAAG s canFam1.chr18 28857735 216 + 66173745 CTGCCACCTGGGAGGGGGGGAACCAGAAAAATCCCTGGGCAA--CAGGGACAGATCCAGCCCACAAAGAA---------------------------------------------------------------------CAGCGAGGGGGATTGGTTAAAACACGCGAACTACGTAAAATAGAGAAATATGTAGAAAAAGAGAAAACAAAACAAAATTTCACCGGAAACCCAGCGGACGTCATAGGCCCCCCAACCTTACTTTGAAACGCATTCGTGAAAAGAAACG a score=24558.0 s hg17.chr17_random 1604783 56 + 2618010 AATTAAGAATTTCCCTT-TTAAACTATATTTCAGGATAACTCAATAACTCTAGTGGA s panTro1.chr19 78983560 56 + 82489036 AATTAAGAATTTCCCTT-TTAAACTATATTTCAGGATAACTCAATAACTCTAGTGGA s mm5.chr11 118648677 56 + 121648857 AATTAGGCTTACCTCGT-TTGAGTTGTATTTCAGGGTAACTCTATAACTGTAATTGG s rn3.chrUn 51791897 56 + 75822765 AATTAGGTTTACCTCGT-TTGAGCTGTATTTCTGGGTAACTCTATAACTCTAATTGA s canFam1.chr18 28857951 52 + 66173745 AATTAAGCGTGCCCCCTCTTGAGCGGCCCTCCAGGGTAACCCAG-----CTGGTGGG a score=2013.0 s hg17.chr17_random 1604839 20 + 2618010 CAACAGCAAGTATTTTTGGt s panTro1.chr19 78983616 20 + 82489036 CAACAGCAAGTATTTTTGGG s mm5.chr11 118648733 20 + 121648857 CAAGGAAAGTTGTTTTTTGT s rn3.chrUn 51791953 19 + 75822765 TGAGGAAAGTTTTTTTTAT- a score=54578.0 s hg17.chr17_random 1604859 613 + 2618010 ttttgtttgtttggtttcttttttttgagatggagtcttgctnctattgncccaggctggagtgcaatggcacaacctcggctcactgcagcctctgtctcctgggttcaagtgattctcctgcctcagactcctgagtagctgggattacaggcgcccgcaaccaggccctgctaattttttgtatttttagtagagttggggtttcaccatgttggccaggctggtctcaaactcccgacctcaggtgatccacccacctcggcctctcaaagtgctgggattacaggtgtgagccaccacacccagccTGTTTGGttgttttatttaagagacagggtctcgctccatcacccaggctgaagtgcagtggtgtaatcacagctcactgcagccttaacctcttgggctcaaaggatccttctgcctcagcccccgagtagctgagactacgggcgcgcaccaccacacctggctaatgttttatttttttgtagagatggggtcttgccatgttgcccaggctggattcaagctcctggcctctctcaccttggcccacaaaagctctgggattacnaagcgtgagccaccgtgcccagccTTTTTTGTC s panTro1.chr19 78983636 609 + 82489036 TTTTGTTTGGTTGGtttcttttttctgagacggagtcttgct-ctattg-cccaggctggagtgcaatggcacaacctcggctcactgcagcctctgtctcctgggttcaagtgattctcctgcctcagactcctgagtagctgagattacaggtgcccgcaaccaggccctgctaa-tttttgtatttttagtaaagatggggtttcaccatgttggccaggctggtctcaaatgcctgacctcaggtgatccacccacctcggcctctcaaagtgctgggattacaggtgtgagccaccacacccagccTGTTTGGTTGTTTTATTTAAgagacagggtctcgctccatcacccaggctgaagtgcagtggtgtaatcacagctcactgcagccttaacctcttgggctcaaaggatccttctgcctcagcccctgagtagctgagactacgggcgcgcaccaccacacctggctaatgttttatttttttgtagagatggggtcttgccatgttgcccaggctggattcaagctcctggcctctctcaccttggcccacaaaagctctgggattac-aagcgtgagccaccatgcccagccTTTTTTCTC a score=4091.0 s hg17.chr17_random 1605472 26 + 2618010 GTTGTTGTTTTTAACAGAACAATTTC s panTro1.chr19 78984245 26 + 82489036 GTTGTTGTTTTTAACAGAACAATTTA s mm5.chr11 118648757 24 + 121648857 GTTGTTTCTTTGAACAGA--AATTCT a score=2353.0 s hg17.chr17_random 1605498 20 + 2618010 AGCTACTCATTGTGAAGGAG- s panTro1.chr19 78984271 19 + 82489036 AGCTACTCATTGTGAA-GAG- s mm5.chr11 118648781 20 + 121648857 AGCTAGTCTGTGTGAGGAAG- s canFam1.chr18 28858031 21 + 66173745 AGCGACTCACGGCAGGGGGAG a score=8916.0 s hg17.chr17_random 1605518 103 + 2618010 ATGAGATCATGAGAGAAACCGTGATTTTGCCACC-TCTCATGACATAAGTATTTCTCGCAAGGGTC-----ATGGATGAGATCAGTAATGACAAAA--CTAGGGCATCACA s panTro1.chr19 78984290 106 + 82489036 ATGAGATCATGAGAGAAACCATGATTTTGCCACCTTCTCGTGACATAAGTATTTCTCGCAAGGGTC-----ATGGATGAGATCCCTAATGACAAAAACTTAGGGCACCACA s canFam1.chr18 28858052 95 + 66173745 GTGCCATTCGGAGATCACC---GATT---CAAGC-TCCCGTGTCCTGATTATTTCTCGCGACAGTCCACGGATGCACGAGACCATCGATGAAAGAT---------GCTACT a score=3141.0 s hg17.chr17_random 1605621 19 + 2618010 GGGTGGATCCGGGCTATGA s panTro1.chr16 27863635 19 + 101535987 GGGTGGGTCCGGGCTATGA s canFam1.chr18 28858147 17 + 66173745 --GAGGAGCTGGGTCATGA a score=43503.0 s hg17.chr17_random 1605640 477 + 2618010 CCACCTGGACCCACGGGGCACACTTAGCATCACAGGGTGGGCCCAGGCTGTGGCCACCTGGACCCACGGGGCACACTTAGCATCTCAGGGTGGGCCCGGGCGATGGCCACCTGGACCCACGGGGCACACTTAGCATCAGAGGGTGGGTCCGGGCGATGGCCACCTGGACCCACAGGGCACACTTAGCATTACAGGTGCTTCCATGTGGCTCTCACAGCTCTGCCCACGAAGGCTTCTGGCAAAGAAAGATGAGCCTGAATCTAAGGGC----GTTTCTGCGGCACAGCTTCCATTTGCAGGAGACACGGGGCGAGGCGACACCACAGAGAGGCAAACAGCAGCGCGATAGGCCACACATTTGCAGGACAGCTGATCTGGTTTCTGCAACAAATCACAAGTGGTGGGAGGAGCAATGGGGGTCGGGGGCGGCGCCTGATCTAGAGTAAGAGAGGTTCAAGAGGTGCCACCACAAAACTTAAA s panTro1.chr16 27863919 477 + 101535987 CCACCTGGACCCACGGGGCACACTTAGCATCACAGGGTGGGTTCGGGCTGTGGCCACCTGGACCCACGGGGCACACTTAGCATCACAGGGTGGGTTCGGGCTGTGGCCACCTGGACCCACGGGGCACACTTAGCATCACAGGGTGGGTTCGGGCTGTGGCCACCTGGACCCACGGGGCACACTTTGCATCACAGGTACTTCCATGTGGCTCTCACAGCTCTGCCCACGAAGGCTTCTGGCAAAGAAAGATGAGCCTGAATCTAAGGGC----GTTTCTGCAGCACAGCTTCCATTTGCAGGAGACATGGGGCGAGGCAACACCACAGAGAGGCAAACAGCTGCATGATAGGCGACACATTTGCAGGACAGCTGATCTGGTTTCTGCAACAAATCACAAGTGGTGGGAGGAGCAGTGGGGGTCGGGGGCGGCGCCTGATCTAGAGTAAGAGAGGTTCAAGAGGCGCCACCACAAAACTTAAA s canFam1.chr18 28858164 265 + 66173745 -----------------------------------------------------CGACCTG--CCCCAGGGTCACA-------------GGTGAGCCCCAGCG-----------------TGAGACACAT-----------------------------GCCCCCCCCACCCCCCGGG--------------------------------------------------AAGGGCTCCAGGC--GGAGAGACGAGCCTG----CAGGGGCCCAAGCTTCCACAGCTCAACTTCCGTTTCCAGGAGAGAGGGGAGCAGGTGAT------GGAGAACGTGCAGCCGC-----------CGCA----CAGGACAGCTGAT-----------------------GTGGCAGGAGGG--AGGCGGGGGCGGGGGCGATGCCCCATCTGGGCCAAGAGAGGTGCAAGAGGCCCCGCAATGACCCTTCCT a score=27495.0 s hg17.chr17_random 1606117 306 + 2618010 CTGTGGGCCTTGTTAGGAANCCTGTGTGTTCCATCTGATGGACGTAAGCAAACAATCAGGGGAATGTGATTCTGGATGGGGCCTGAGC-GGGTGCC------AAGGAATGACTGTTAATTTGAACATTGCCCTAAGGGAACCGCAAGTGTGTTCCAGAGTTTCCCGTACTTGGCGCCTTG---------------CAACCTGAAGTTCATAGGAAGAAAATTTCAGAACGNTNTTTTGCTACAGGATGGAAAGTGCTTCAGCCACAGGGGAAAAGCAAAGAGAAAGACANACAGCAATGCATGAAACAAGTGTGGCGATTATCGATAA s panTro1.chr19 78985733 301 + 82489036 CTGTGGGCCTTGTTAGGAA--CTGTGTGTTCCATCTGATGGACGTAAGCAAACAATCAGGGGAATGTGATTCCGGATGGGGCCTGAGC-GGGTGCC------AAGGAATGACTGTTAATTTGAACATTGCCCTAAGGGAGCTGCAAGTGTGTTCCAGAGTTCCCCGTACTTGGCGCTTTG---------------CAACCTGAAGTTCATAGGCAGAAAATTTCAGAACGTT--TTTGCTACAGGATGGAAAGTGCTTCAGCCACAGGGGAAAAGCAAAGAGAAAGACA-ACAGCAATGCATGAAACAAGTTTGACGATTATCGATAA s canFam1.chr18 28858429 267 + 66173745 GTGCGGATCCCGTCTGGGACCCGAT---TTC-------------------AACGATCCAG------------CAGCCGGGGCCTTATCTGAATGCCTCAGATAAGGCATTCCTGCTCCTTCCGACGCTGTGCGCACAGAGCCACAATTAGGTCACAAAGTTTCCCGGGTTTGGAGAGTTGTCCCCCCACCCCGGCCCCCTCGACGTCTGCGGGAGCAAAACCGCAGAAGG----TCTGCGACGGCTCTGAGGATCCTTCAGGCCAAGGG--------AAGGGGAAG---------------TGAGGCGCCCGTGACGCTGCTCGGTAA a score=60048.0 s hg17.chr17_random 1606423 697 + 2618010 AGTATGTGTGGTGATCACTGATCACGTGTGTGAGTTTATTTGAAAACTTACATTAAAAAATTTTGAGNgccagacacggtggctcancgcctgtaatcccagcactttgggaggccgaggtgagcagatcacctgaggtcaggagttcaagatcagcctggccaacatggtaaaaccacatctctactaaaaataaaaataaatgcaaaataagccggatgtggtggcaggtgcctataatcccggctactcaggaggctgaagcaggagaattgcttgaacccggaaggcggaggttgcagtgaatcaagacncgtgccattgcactccagcctgggcaacaagagtgaaactgtgactcaaaaaaaaaaaaaaTTTTTTTTTTGAAA---gactaggcatggtggctcatgcctgtaatcccagcactttgggatatcaaggcaggaggattgcttgaggccaggagatcgagaccagcctgggcaacatggtgagaccctcgtctctta-----------------------aaaaaaaaaaaaaaatttgcctcccaagacacatgcctgtagtcccagctacttgggagacctaggagagaggattgcctgaggctgggaagttgaggctgcagtgagctatgatcaagccactgcactccagcctgggtgacagagcaagactnctgtctcaaaaaataaacaaaaatgaagaaaga s panTro1.chr19 78986034 716 + 82489036 AGTATGTGTGGTGATCACTGATCACGTATGTGAGTTTATTTGAAAACTTACATTAAAAATTTTTGAg-gccagacacggtggctca-cgcctgtaatcccagcactttgggaggccgaggcgagcagatcaactgaggtcaggagttcaagatcagcctggccaacatggtaaaaccacatctctactaaaaataaaaataaatgcaaaataagccggatgtggtggcaggtgcctataatcccagctactcaggaggctgaagcaggagaattgcttgaaaccggaaggcggaggttgcagtgaatcaagac-cgcaccattgcactccagcctgggcaacaagagtgaaactgtgactcaaaaaaaaaaa---TTTTTTTTTTGAAAAGAgactaggcatggtggctcatgcctgtaatcccagcactttgggatatcagggcaggaggattgcttgaggccaggagatcgagaccagcctgggcaacatggtgagaccctcgtctctaatagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttgcctcccaagacacatgcctgtagtcccagctacttgggagacctaggagagaggattgcttgaggctgggaagttgaggctgcagtgagctatgatcaagccactgcactccagcctgggtgacagagcaagact-ctgtctcaaaaaataaacaaaaaTGAGGAAAGA a score=25627.0 s hg17.chr17_random 1607120 229 + 2618010 CATAACCTTTCTCTTACAGACATGATCAGGCATCA---------TGGAAATCTTATTGCAGNAAGTTG-------------CNTTGCCCTTCACCCCTGAGCCTCAC-CTCTCTGTTTCAGGGGATCCGAGTTTAGGGAAGGAAAGTCGAGGGGGCCATTGCTTCT-NCCCTTGTGGCTGCTGCGCCCACAGNCCATGGGCCCCTCACGCTGGGGCTGGGTGCCTGAGCAGAGTCCCTGTGCAGCCCCCACCA s panTro1.chr19 78986750 224 + 82489036 CATAACCTTTCTCTTA-AGACATGATCAGGCATCA---------TGGAAATCTTATTGCAG-AAGTTG-------------C-TTGCCCTTCACCCCTGAGCCTCAC-CTCTCTGTTTCAGGGGATCCGAGTTTGGGGAAGGAAAGTCTACGGGGCCATCGCTTCT--CCCTTGTGGCTGCTGCGCCCACAG-CCATGGGCCCCTCACGCTGGGGCTGGGTGCCTGAGCAGAGTCCCTGTGCAGCCCCCACCA s canFam1.chr18 28858793 243 + 66173745 CCCGTCCTGTCTCCTGCAAACTTCCCCTGACGTGGACCTTCTGCTGGAAGCATCATCGCGA-AAGCTGGCACCCGtctcctc-tctctctttctctctctctctctctctctctccctctTGGGACCTG-TTTTGGGGAGGGGACATCTCCGGTGTCATAGTTCATGGTCCCCGAGTCCCCTGCGT-------CCGTAGGGCTCCCGCAGCAGGGCTGGGCACCTGGGCGGAGTCCCTGCCTGGTCCCCACCA a score=78821.0 s hg17.chr17_random 1607349 880 + 2618010 AGCTCCAGCATNCCTGGACACCTCACGCCAGCCCTCCTGGACTTTGTGCTGGGGATGAGGTCAATATGACAGCCCCCCTGAGGTCTGGTCGCTCCCGCACACCCTCCACAgtgggcagaatggtgccccccaaaaggcccacatcctaatcccgggactgtgaatgggtgacttttcatggcaaaagggacattgccagtgtgaccgagggtcctgcgatgggagactccccaggatcatgcaggtgaacccaatggcattacaagggcccctgtgagagagaggcgggggtcagagcagacgtggctcgaaagcagagggtgtggtgacgccccagcctgggactgaggcccagaacgcggtggccttcagaagccgggaaaggccaggagacggatctgcccccagcctccagaagaagccagccctgctgacaccctggctttagcccagcgcggccccatgggacttctgacccccagaactctaaaataataaattggcattgttttgatccnttctgtggctgatatgtgtgatgnangggggttttcacactcttgcgtgggacgtgaaacgtctttagaacagtggcacgttacctgtcttacatgGGGAAAAAAGAGNGAAAAATAaatacatttgcattgttttaaaccngctaagtttgtggtcacgtgtaacagcagaaacagcaaaTGGATGTGCCCTCCGAGGCTCCCCTACATGCCTGCGAAGCTCGGGGACGCTGGGGAGGGTCACCTTGGCCATCTGGGAGCAGGTGGTACATCAGGACCCTCCCTCGCTCATCACCACCCTTCCTCCCCCTTCGCCATCCTCAATGG-CACGGGAGCCAACCCACAGTGAAGCGGCCGGACAG s panTro1.chr19 78986974 876 + 82489036 AGCTCCAGCAT-CCTGGACACCTCATGCCATCCCTCCTGGACTTTGTGCTGGGGATGAGATCAATTTGACAGCCCCCCTGAGGTCTGGTCGCTCCCGCACACCCTCCACAgtgggcagaatggtgccccccaaaaggcccacatcctaatcccgggactgtgaatgggcgacttttcatggcaaaagggacattgccagtgtgaccgagggtcctgcgatgggagactccccgggatcatgcaggtgaacccaatggcattacaagggcccctgtgagagagaggcgggggtcagagcagacgtggcgcgaaagcagagggtgtggtgacgccccagcctgggacagaggcccagaacgcggtggccttcagaagccgggaaaggccaggagacggatctgcccccagcctccagaagaagccagccctgctgacaccctggctttagcccagcgcagccccatgggacttctgacccccagaactctaaaataataaattggcattgttttgatccttt-tgtggctgctatgtgtgatga--gggggttttcacactcttgcgtgggacgtgaaacgtctttagaacagtggcacattacctgtcttacatgGGGAAAAAAGAGGAAAAAATAaatacatttgcattgttttaaacc-gctaagtttgtggtcacgtgtaacagcagaaacagcaaacGGATGTGCCCTCCGAGGCTCCCCTATATGCCTGCGAAGCTCGGGGACGCTGGGGAGGGTCACCTTGGCCATCTGGGAGCAGGTGGTACATCAGGACCCTCCCTCCCTCATCACCGCCCTTCCTCCCCCTTCGCCATCCTCAATGGGCACGGGAGCCAACCCACAGTGAAGCGGCCGGACAG a score=12106.0 s hg17.chr17_random 1608229 62 + 2618010 GCAGGCTGTGCTAATTCTCTGCAAGGCAGAGCTGTTCCTCCAGCCTCAGAATGCAGCCAGCC s panTro1.chr19 78987850 62 + 82489036 GCAGGCTGTGCTAATTCTCTGCAAGGCAGAGCTGTTCCTCCAGCCTCAGAATGCAGCCAGCC s mm5.chr10 51584000 62 + 130633972 GCAGTCAGTGTCATCCTCCTGCATAGCAGAACTGCTCCTCCAGCTTCTGGATGCTGGCAGCC a score=21396.0 s hg17.chr17_random 1608291 235 + 2618010 CCTGCACGGCAGCCTCAAGGGGACAGGACCCCCGTGCTCTCTCCTCTCCTCTTTCCCCTGGCCCCGGCCCNTGCCTCTCTGCTCCCTGCCCCCCAGCCCCACTGCCTTGGGCCTCCCTTGAGCTCCCAGGACAGGTCAGCAAATTGCTATGTGTGCATATTTTCTAGGGAGAGTCCACAACCATGGTCAGAGTCCCCGAGTCCAAAAAGAGACAGAGACATGGCCTCAAGTGGCT s panTro1.chr19 78987912 234 + 82489036 CCTGCACGGCAGCCTCAAGGGGACATGACCCCCGTGCTCTCTCCTCTCCTCTTTCCCCTGGCCCCGGCCC-TGCCTCTCTGCTCCCTGCCCCCCAGCCCCCCTGCCTTGGGCCTCCCTTGAGCTCCCAGGACAGGTCAGCAAATTGCTATGTGTGCATATTTTCTAGGGAGAGTCCACAACCATGGTCAGAGTCCCTGAGTCCAAAAAGAGACAGAGCCATGGCCTCAAGTGGCT a score=31535.0 s hg17.chr17_random 1608526 185 + 2618010 CCTTGGGCCCCAGGTTCTGAGCTGGAATTGGATTCCCTGAGCCAGCTCTTAGTCCACGGTGACAGGCATCTGCTGATGTAGCCTCCTCTTATCTTCCCCNAGAAACCAGATTAGACGCGGCCAGCAAAAAGAATATTCTCAGCTGGCAAAACGCTTTCACCGGCCACCAAAGGCCCCCCGTCCCT s panTro1.chr19 78988146 184 + 82489036 CCTTGGGCCCCGGGTTCTGAGCTGGAATTGGATTCCCTGAGCCAGCTCTTAGTCCACGGTGACAGGCATCTGCTGATGTAGCCTCCTCTTATCTTCCCC-AGAAACCAGATTAGATGCGGCCAGCAAAAAGAATATTCTCAGCTGGCAAAACGCTTTCACCGGCCACCAAAGGCCCCCTGTCCCT s canFam1.chr18 28859045 163 + 66173745 CCCTGGGTCC------CTGAGCTG-----------CCCGAGCCGGCTCT--GTCCCTGGTGATAAGGATTTGATGATTTAGCGTCATCTTATCCTCCAC-AGACAGCAACTTAGATGTGGTTGGT--AAAGAACCTTCTCAGCTGGCAAAGCACCTTCTCCGGCCACCGAGGACCCCTGGTCCCC a score=19272.0 s hg17.chr17_random 1608711 274 + 2618010 CCAGCCCATGGAGGGCACGGTGCTCTCTCATCCAGAT--GGGCTCCGGGCCCTGTGCCCCACATCCCGGGAG----------TGAGCCTA------------------------GGCCCTGC----------------GCTGCGTTCA--TCGTTTGGGAGCGNTTGTGNGGGTGTAGGTTTCCACCCACATCNCAGNACCCTTGAGTCCTCAGGAGCAAGGACTGGCCTCTCTGGTTTCCCTT----CAGCAGGTGCTGAATCAATGCCCGGGAACCGAGGCGACCCATGAGGTGACAGAGGCTGAGCTGGAGAAGGCTCACCTGAGACCT s panTro1.chr16 27866966 274 + 101535987 CCAGCCCACGGAGGGCACAGCGCTCTCTCATCCAAAT--GGGCTCTGGGCCCTGTGCCCCACATTCCTGGAG----------TGAGTCTA------------------------GGCCTTGC----------------GCTGCGTCCA--TCGTCTGGGAGCG-TTGTG-GAGTGTGGGTTTCCCCCCACATC-CAG-ACCCTTGAGTCCTCAGGAGCAAGGACTGGCCTCTCTGGTTTCCCTTCACACATCAGGTGCTGAATCAATGCCCGGGAACCGAGGTGTCCTGTGAGGTGACAGAGGCTGAGCTGGAGAAGGCTCACCTGAGACCT s canFam1.chr18 28859208 302 + 66173745 -CACCCACCGAGGGGTGCCGT-CACCATCCCCCAGAGCAAAGGTGCGTGCCCCGCTTCCTGCACGCTGGGGGGATTCGTGGCTGCGCCCACCAGCAGCTCCTCCAGGGGTCACCGTCCCTGTCCCCACCTACCTGCAAGCCCCGAGCAACCCGTCCGGGAGGC-TCATG-AGTTTCAGATCTCCGTCTACACCCCCG-------------TCGGCAGCA--------CCTCCCGCGTTGCCTTTCACACGGTCAGCGCCCTGTAAATGCTGGCTGTGCAGGGCGGCCCGCG-GACAACACGGGCTGAGACGG---AGGGTCACCGGGATGC- a score=20945.0 s hg17.chr17_random 1608985 175 + 2618010 GCACAGATTCAGGCGTTATCGCCGCCAAGGCCCAGCAAAGGAAGCGAGGCTGCCGTGGACACAACTCATGGCTCAAACTGGGGCGGCCCGAATGTTCCTTCGTGGGGCTCCGGGGCTGG-----TAGAGGGGGGTCTATGCTCTTCCCCCTGATCTTTTGG-----CAGGTCC---TGGCTCACCGGG s panTro1.chr19 78989159 175 + 82489036 GCACAGATTCAGGCGTTATCGCCGCCAAGGCCCAGCAAAGGATGCGAGGCTGCCGTGGACACAACTCATGGCTCAAACTGGGGCGGCCCGAATGTTCCTTCGTGGGGCTCCGGGGCTGG-----TAGAGGGGGGTCTATGCTCTTCCCCCTGATCTTTTGG-----CAGGTCC---TGGCTCACCGGG s canFam1.chr18 28859510 182 + 66173745 GCGACGATTAACACCTTG----CGCTGGGGCGC-GTTAAGGAAGTGAAGCTACACGGGACATAACACCAGCCCCCAA-GGAGATTTCCTGAACCTTCCCCTGAGGGTCTCAGCGGCCAGGGCATGGGAAGGACACCCACGCTCTTTCCACCGCCCTCCCTGGGACCCGGGCCCGGGTGGGTCACCGCG a score=17133.0 s hg17.chr17_random 1609160 251 + 2618010 ----------------GCTCAG-CCCCACCCTNCCAANCGCACCAGGTGT---------CACAGGGCACCTGCTCAGTGGA--GCCTGTTGCTGTCCAGAGACTGAAGGTGGTGATGATGAGGCCAACACCGATGGCCTTGGGACCAACATCAA-GGTGTTTTCCTACCCAAG------GACTGCACCAGAGGGACACCCCTCCCCGCcacacacacacacacacacacacacacacacaT--GAGATCCTGTCCCCTGATGGGGG----AGGTAAGGGGGAGCAGGCCCTG s panTro1.chr19 78989334 251 + 82489036 ----------------GCTCAG-CCCCACCCTCC--AACGCACCAGGTGT---------CACAGGGCACCTGCTCAGTGGA--GCCTGTTGCTGTCCAGAGACTGAAGGTGGTGATGATGAGGCCAACACCGATGGCCATGGGACCAATATCAA-GGTGTTTTCCTACCCAAG------GACTGCACCAGAGGGACACCCCTCCCCGCcacacacacacacacacacacacacacacacacacGAGATCCTGTCCCCTGATGGGGG----AGGTAAGGGGGAGCAGGCCCTG s mm5.chr11 118649793 159 + 121648857 ----------------GCTCGGTCCCCTGTCACCCGATCCCACCAGATGT------------------CCTGCTTAACTGACTGCCTGTTGTCAACAAGA--------------------AGGCACATGAGGATGACCACGAGGCCAAGGTGAAGGGTATTTCTGTACCCAAG------GATTTTCCCAAAGGAACTTTCTCCTCC------------------------------CGCAG----------------TGATGGG---------------------------T s canFam1.chr18 28859692 214 + 66173745 GCCGGACAGTGCGGGTTCTCGA-CTTCATCCGTC----TGCACCCAGTGCTCGGCCCCACACACTGGCCCTGGTCA-CCAA--GCATCCTGCTGGCGAAGGACT-----------------------CTGTGACAACAGCAGGGCCTGTGTCAAGGGGGTTTCTCCGCCCGAGGACCTTGACTGCACAACAGGGACGCCACCCTTC-----------------------------------------------CCCCAGGTGGGGGCAACGAGCTGGGAGGAGCGCACCCAG a score=74981.0 s hg17.chr17_random 1609411 316 + 2618010 CAGTGACCTGTTGGCCATCTCTTATCCACCTGACGT-GGCCAAA-GGTAGCCACGTTATCTCCCATAGCATGTCCTCTCCTCCGTATCAGGACACAGTA-GACATCCAGGTGCCTATAAAATAGACGTTTCTGGAGATAGCAGACCCTTGCAGG-NCTCTCCGGAAAGACTCTGTGATAACAG-----------------CCCNTGGTGAACAGAGAAGC----------------------CCTTAGCCACACGGTGTCCAGGGGCCCCACCACACCTCTGGCCTTTGGACAAAGTCAGCACAAGCCACNTCCCANCCNCCACCCACCTCCTTCGTGCATTCTGCAGCTGCCACTCCC s panTro1.chr19 78989585 310 + 82489036 CAGTGACCTGTTGGCCATCTCTTATCCACCTGACGT-GGCCAAA-GGTAGCCACGTTATCTCCCACAGCATGTCCTCTCCTCCGTATCAGGACACAGTA-GACATCCAGGTGCCTATAAAATAGACGTTTCTGGAGATAGCAGCCCCTTGCAGG--CTCTCCGGAAAGACTCTGTGATAACAG-----------------CCC-TGGTGAACAGAGAAGC----------------------CCTTAGCCACACGGTGTCCAGGGGCCCCACCACACCTCTGGCCTTTGGAC-AAGTCAGCACCAGCCAC-TCCCA--CCCCACCCACCTTCTTCGTGCATTCTGCAGCTGCCACTCCC s mm5.chr11 118649952 336 + 121648857 CAGCGATGGGCTGGTCACCCTTTATCTACACAAGGTAAGCCAAA-GGTAGCCAC-TTATCTATCCCAGCTCATCCCGCCTGCTTTATCAGGATGCAAAGTGACAGCCACCGGGCTGTAAAACAGACACCTCTAAAGATAGCAGGTCC--AGAGT--CTCTGGGGGAAGATTCCAGGGTAATAAGGTATCTTTACTGAGATTCC-AGGGTAACAAGGTATCT--------TCACTGTCT--CTCCTTCGGCTTATGGT-TCAGAAGGACCCAGAGAACCTCTGGCCTTCAGGCAAAGTCAACGCCAGGCAT-TCCTG--CTCCACCCACCCTCCCCACTGACTATGC--CTTGCACTTGC s rn3.chrUn 51793055 301 + 75822765 CAGTGATGGGCTGGTCATCCTTTATCTACACAAGGTAAGCCAAA-GGTAGCC-CGTTATCTGTCCCAACTCTTCCCTTCTGATTTATCGGGACACAAAGTGACAGCCACCAGGCTGT-----ATCTGCCTCTAGAGATAGCAGGTCC--AGAGT--CTCT-GGGGAAGATTCCAGAGTGACTATGTATCTTCA-------CCG-GAGATTCCAAGGTAACAATGTATCTTTGCTGTCT----CCTTGCTCATAGGGC-TCAGAAGGACCCAGAGAACCTCTGGCCTTCAGGCAAAGTCAATACCAGGCAC-TCCTG-------CTCACCTTCCC------------------------- s canFam1.chr18 28859906 305 + 66173745 CGATGACAGGTTAGCCACCCC-TATCTGCCTGGCAT-GGCCAAAGGGTAGTCCC-TTATCTGCCCTGGCATGTCCCTTCTTCATTATCTGGGCATAACC-AGCATCTACGCGGCTATAAAATAGACGGTTCTGGAGATAGCAGGTCCTCTGAGCTCCCCTGAGGTAAGAGCCTGTGACCGCGG-----------------CCC-CGATGGACCCAGATGC---------CATCTGTCATCTTCCATTGCC-CAGTGT-CCAGAAGGGCCTCGACGGGCGCTGGCCACCGGGCAAAGTCAGCACC-GCCAC-CCGCC--CTCCGCCCTCCACCCT-----------------CCGCCCCC a score=-3514.0 s hg17.chr17_random 1609727 156 + 2618010 TGCCCACCAGGGCGACC---------AGACGCTGGCTGGAGCCAGGGC----AGGGGCGGGCACTCTTCACCGTTTCCACAGGAAATCCCAGACC-CTGTCCCCGCAGCCTGGCACTCAGACAGCTGCTCCCACTCTCCCC--CTGCCCATGGGAGCTCAGCCTCTGGGGCA s mm5.chr11 118650288 102 + 121648857 ---------------------------AAAGATAACTGGA---------------------CACTCCTC---------------AGTCTCTGATCATTGTCCCCT--GGATGGTCCCTGACCA-----TCTTGTTTTCCACAACCGCCTCTTAGAGTCTAGCTTCCATGGCA s rn3.chrUn 51793356 129 + 75822765 TTCCCACCATGTATGCCTTGCACTTGCAAAGATAACTGGA---------------------CAGTCCTCAGA---------------CTGTGATCATTGTCCCCT--GGATGGTCCCCACCCA-----TCTTGCCCTCTATAACCACCCCTTAGAGCTTAGCTACCATGGCA s canFam1.chr18 28860211 141 + 66173745 ---TGCCCAGGGTGGTC------------AGCTGCTTGGG---AGGGCGGAGAGGGACGGGCGCCCTCTACGCTTTGCAGAG--AGCCCCAGACA-CGGCCCCAG--GCCCAGCTGCCCGATGGCC--TCAGGGTCCCCCCCCCTGCCC------ACTCAGCCACCAGGGCG a score=2253.0 s hg17.chr17_random 1609727 9 + 2618010 TGCCCACCA s panTro1.chr19 78989895 9 + 82489036 TGCCCACCA s rn3.chrUn 51793356 9 + 75822765 TTCCCACCA s canFam1.chr18 28860211 6 + 66173745 TGCCCA--- a score=26833.0 s hg17.chr17_random 1609883 196 + 2618010 AGAGGGGACCCTGTTTACACCAACACACCTAGGAA--AAACCTTGGGGAAAATTCCAGGCCTGAGTCCCC-----------AGTGTCCCCAGAGTCCATGGCTGGTGG--------------------CAGAGGGCCAAGAAGATAGTGACAACGAGGATTT------------ATACCCC-AGCAA--TGAGGGGACAGCAACAAGGCAGCTTCTCT---GCAGGTCCACACAGGAAA-GGAAACCC s panTro1.chr19 78990004 196 + 82489036 AGAGGGGACCCTGTTTACACCACTGCACCTAGGAA--AAACCTTGGGGAAAATTCCAGGCCTGAGTCCCC-----------AGTGTCCCCAGAGCCCACGGCTGGTGG--------------------CAGAGGGCCAAGAAGATAGTGACAACAAGGATTT------------ATACCTC-AGCAA--TGAGGGGACAGCAACAAGGCAGCTTCTCT---GCAGGTCCACACAGGAAA-GGAAACCC s mm5.chr11 118650390 186 + 121648857 ----------------------AGACACTTGGGAA--AGGGCC---AGAAAAATGAAGATCTTGGTTCCA-----------AATCT-CCCGGAGCGCACAGCACAGGG--------------------CATGGAGTTCACAGCATTGAAGCATCAGAGATGCAGAGAATAATCAACACCTG-AAGCA--TGGAGGGCCAGAGGCTGGGTGGCCTCTCCTCAGCAGGTTCAGAGGGGAAAGGGGAACCC s rn3.chrUn 51793485 182 + 75822765 ----------------------AGACACCTGGGGA--AAGGTC---AGAAAAGCACAGACCTGGGTTCTG-----------AGTCT-CCCAGATCCCACAGGGTATGGAGGTGACTGCACTGAAGCATCAGAGGTGCAGGGGGAAATTG-------------------------ACACCTGAAGCAG--CAGGGAGGCAGAGGTTAGGTGGCTTCTCCTCAGCAGGCTCCGAGGAGCAAAGAGAACCC s canFam1.chr18 28860352 192 + 66173745 AGAGGGGGAACCTCCAATGCCAGCACACCCTGGAATCACGCTT---GGGGGGTTCCCGACCTGAGTCCTCCTGGAGGCCATGGTGCCATCAGAGGCCCGAACCAGCTG--------------------CA--GGTCTGAGAAGAAAGCAGAGGCAAAGATTT------------ATGCCTG-AGACACCCAGGGGGCCAGTGACAAA--------------GCAAGTTC---CAGGAAA-AAAAACCC a score=1050.0 s hg17.chr17_random 1610079 3 + 2618010 ACA s panTro1.chr19 78990200 3 + 82489036 ACA s mm5.chr11 118650576 3 + 121648857 ACA s canFam1.chr18 28860544 3 + 66173745 TCA a score=81824.0 s hg17.chr17_random 1610082 884 + 2618010 GTGCGGCTCCGTGCAGCAGGGGCTCTGAGTGACACTCGCAAGGCCATGGCACCAGGCAGGGGACCCCCCCACCGGAGGGCATGGCTCAGCAGAAGCCGGGAGAGGGNTGGGTCCTG---GGATCCCAGCCCAAAGCAGGCAGTCAGGAACTGAGTGACCGCGGGTACCCTGGGGGTACAGGGCAGAGGGAGGAGAGTGTCTCCGANGGCCCCCTTG--CCATCCCNTCAATGCCAAGTCCAGCAAAGGTGGTTTTCTGGCGNCCAACTAGCAGGCACTGACCCCCCTCGTATCCCCAACTCGTGACCCAGCCACCNTTTCCCGGGGGCTGAGTGGCTCTGAACAGGGGTAGAGCCGTGGGGCAGTGTGGGGCTGACACCCAGGAGGCGGTGGGGGAGGCGCCCACTCAGGCCCTCGCTGCCCGGGGAAAAGGCTGCTGC----ATGCAAAGCACGCTGACGCCAGAGCCTTCGGCAGAGGNAGGGGGAAATTGTTTATATCTCACCCTCCTTCTTACCATGGGCCTCCTGGGGGCTGCTGGCCCTG-------------GGTGAGCAGGACGGACCAGGACCCGAGATGCCTCAGAGGGACACTTCTTNGGGCAGGAGGACAGCACAGGCCATGGAGTCCCAAGGGGAGGGGGAGGGCTGT-CACACTGGGCCCCGGTGGGTCCTCTGCAGCATGACAGTCTAGCCTGCCCCTGGCCAT-NGCTGAGCCATGTGG-------CTCTCCTCTCCCAGACCCTGTGGTGACAGGCAAGGGC----------ACAGGGGTGGCG-GGGCAGAGGCACTGTTGAAA----AACCTGC-----------------------CCAAG------------------------------GGCCTGCCCT---------------TGGCATCTCCTGGACCCACCCTCATCTTCCCCGAGGCTGTCCGAGTGCTTTCCCGGGTGGTCTGTCCTCAGTGGGAATGCGG s panTro1.chr19 78990203 874 + 82489036 GCGCGGCTCCGTGCAGCAGGGGCTCTGAGTGACACTCGCAAGGCCGTGGCACCAGGCAGTGGACCCCCC--CCGGAGGGCATGGCTCAGCAGAAGCCGGGAGAGGG-TGGGTCCTG---GGATCCCAGCCCAAAGCAGGCAGTCAGGAACTGAGTGACCGCGGGTACCCTGGGGGTATAGGGCAGAGGGAGGAGAGTGTCTCCGA-GGCCCCCTTG--CCATCCC-TCAATGCCAAGTCCAGCAAAGGTGGTTTTCTGGCG-CCAACTAGCAGGCACTGACCCCCCTCGTATCCCCAAGTCGTGACCCAGCCACC-TTTCCCGGGGGCTGAGTGGCTCTGAACAGGGGTAGAGCCGTGGGGCAGTCTGGGGCTGACACCCAGGAGGCGGTGGGGGAGGCGCCCACTCAGGCCCTCGCTGCCCGGGGAAAAGGCTGCTGC----ATGCAAAGCACGCTGACGCCAGAGCCTTCGGCAGAGG-AGGGGGAAATTGTTTATGTCTCGCCCTCCTTCTTACCATGGGCCTCCTGGGGGCTGCTGGCCCTG-------------GGTGAGCAGGACGGACCAGGACCCGAGATGCCTCCGAGGGACACTTCTT-GGGCAGGAGGACAGCACAGGCCATGGAGTCCCAGGGGGAGCGGGTGGGCTGT-CACACTGTGCCCCGGTGGGTCCTCTGCAGCAGGACAGTCTAGCCTGCCCCTGGCCAT--GCTGAGCCACATGG-------CTCTCCTCTCCCAGACCCTGTGGTGACAGGCAAGGGC----------ACAGGGGTGGCG-GGGCAGAGGCACTGTTGAAA----AATCTGC-----------------------CCAAG------------------------------GGCCTGCCCT---------------TGGCATCTCCTGGACCCACCCTCATCTTCCCCGAGGCTGTCCGAGGGCTTTCCTGGGTGGTCTGTCCTCAGTGGGAACGCGG s canFam1.chr18 28860548 792 + 66173745 GATTAGCTGCAGGGAAGACGGGCT-------------------------TGTCAAGGGGGTGACCAGCC------------CGGCCAGGCAG-GGCCAGGAAAGGG---GGGCCTGAATGCACGCCCTCCCCACACATACAGGCA----------GACCCTGGGCCACCTCGGGGGTCAGGTGGAAGGCAGGGGCATACCGTCCA--GTCCCCTCGCTCCGTCCC-CCTCTGC------------------TGTCCTGCC--CCAATC------CGCTGAGTCTCC---CACCCACACAGCCCGACCTTG------TCTTCCAGGAGCCGAGT--CTCTGA--------------------------GAAGCT------------------GGGCAGGTGCCCACTCAGGCCTCGGATGCCCAGGATGAAAGCTCCTGCTCCAAGGACAGGCCCCCCGATGCTGAACCCCTC------------------------ATTTCTCATTGTCCCCCTTGTGATA------CTGGGGTCTGCTGGTGCCGGGGACGGGGTGCAGGGGAGCAGGACAGGCCAAG----GAGGCCTCACCAGGTGCAGATTCTCAGGGCTGG-GGGCAGGGTGGGCCGCAGGGTCCC------------CCAGCTGTCCACAACAGGCC-----------------------TGGCCTAGCACGACCCCAGTGTTGGGCTGAGCACCGGAGTGTCCCCCCGTCTCCTCCCGTACACAGCCCTGACAAATCACAGCCCCAGGTGAAGCAGCGGTGGCACGGGCAGAGGCAGTACTGGAGGGGCGACCTGCATCCCCACTGGCACCTGAGGCCACCAAGGCTGGCAGCCCGCGTTTCACGGGAGAGTCTGGCCAGGCCTGGCTGCGGGACCGGGTGCCACCCGCCGAGGCCCCCACTGCCTCCTTCCTGGGTGGCCAAGT-CCTTCCCCGCTGGTCTGTCCTCAGTGGGAACACAG a score=116689.0 s hg17.chr17_random 1610966 1298 + 2618010 CAAGCCTCCCCCTTGTGCCTGGTATAGCCCNTACCTGCTGGGGGANGGGGACACTAATGATCACCCCCAGCTCATAGGCACAGAAGGGAGGCCTGGGGCAGGGGTAGCCCAGGGTCGTGGCTGAGCCACTGAGAAAAGCTCAGACCCCCAACCCCCTCAGCTCTTCCTCCCCCAGGTTCCTAACCACGGCCCGACCTCCCTGGTCCAGTGAACGTCCCNACTCCGCATTGCATGCTCCCCTCTGGGTTCCTCCAAGGTTCTCAGAGTCCAAGCCTGGTGATCACCAACAAAAATCTCTGCAAACAGCAGATTCCTACAcagatggccctgccttaggatggctccaccgacggcctctgactccacgatggtaagaatgcggccagaactcagcagcaacggcacttgagtcccacaccaccatgttcactttcagtacagtgttcgacaaattgcacaagaaaatcaacacttgattagaaaaatagctcgtgagccggggacaatggttcacgcctgtaatcccagaactttaggaggccanaagcaggaggantggcttgagcccaggagttcaagaccagccttggcaacatggcgagaccccatttctacaaaacaaaacgaaacttttttaaaattagccaggcgtggtggcacatacctgtagccccagcttcttgggatgctgaggcaggaggatcatttaagcccaggagtttgaagctgcagtgagctctaatcacaccactgcactccagcctgggtggcagagtgagagtccgtctc---------aaaaaaaaaagcagacctcatgtgagctgattttgtccacctagaggctaatgggagtgtcctgagcacacatctgaggtcggctgggctgagctggccgggcggttaggcacactaaatgcac-tttttttttttttttttttgtgatacagtctcactgtgtcgcccaggctggagtgcaatggcgccatctcggctcactgcaacctccgcnttcctgggttcaagcgattctcatgcctcagcctcacgagtagctgggattacaggcacgcaccaccccgcccnagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgagctcaagctatctgcctgcctcggcctcccaaggtgctgggatcccaggcgtgagccgcagtgcccggccggtaaatgcatttttgacaggatatgttccacttgcgacaggtttacagggaccccagcatgaatggaggagcctctgTGTG s panTro1.chr19 78991077 1301 + 82489036 CAAGCCTCCCCCTTGTGCCTGGCATAGCCC-TACCTGCTGGGGGA-GGGGACACTAATGATCACCCCCAGCTCACAGGCACAGAAGGGAGGCCTGGGGCAGGGGTGGCCCAGGGTCGTGGCTGAGCCACTGAGAAAAGCTCAGACCCCCAACCCCCTCAGCTCTTCCTCCCCCAGGTTCCTAACCACGGCCCGACCTCCCTGGTCCAGTGAATGTCCC-ACTCCGCATTGCGTGCTCCCCTCTGGGTTCCTCCAAGGTTCTCAGAGTCCAAGCCTGGTGATCGCCAACAAAAATCTCTGCAAACAGCAGATTCCTACAcagatggccctgccttaggatggctccaccgacggcctctgactccacgatggtaagaatgcggccagaactcagcagcaacggcactggagtcccacaccaccatgttcacgttcagtacagtattcgacaaattgcacaagaaaatcaacacttgattagaaaaatagctcgtgagccggggacagtggttcacgcctgtaatcccagaactttaggaggcca-aagaaggagga-tggcttgagcccaggggttcaagaccagccttggcaacatggcgagaccccatttctacaaaacaaaacgaaactttttaaaaattagccaggcgtggtggcacatacctgtagccccagcttcttgggatgctgaggcaggaggatcatttaagcccaggagtttgaagctgcagtgagctctaatcacaccactgcactccagcctgggtggcagagtgagagtccgtctcaaaaaaaaaaaaaaaaaaagcagacctcatgtgagctgattttgtccacctagaggctaatgggagtctcctgagcacacatctgaggtcggctgggctgagctggccgggcggttaggcacactaaatgcacttttttttttttttttttttgtgatacagtctcactgtgctgcccatgctggagtgcaatggcgccatctcggctcactgcaacctccgc-ttcctgggttcaagcgattctcatgcctcagcctcacgagtagctgggattacaggcatgcaccaccccgccc-agctaatttttgtatttttagtagatacggggtttcaccatgttggccaggctggtctcaaactcctgagctcaagctatctgcctgcctcggcctcccaaggtgctgggatcccaggcgtgagccgcagtgcccggccggtaaatgcatttttgacaggatatgttccacttgcgacaggtttacagggaccccagcatgaatggaggagcctctgTGTG a score=35045.0 s hg17.chr17_random 1612264 336 + 2618010 CCATCCGGAGCCC---AGCAGAGCACANGGGNCTTGTTAAACTCCTGCTGCTCACAGAGGGCATCACCCAAAAT--CACAAAGAGGACCGGACAGAGCC--ACAGAACCCCCCACTACTGCCCAGTGGCCCCCAAGCTGCACCAGGGNCCTGAGCCCCCAGAGACTACAACTCAGGCCTTGCTGTGTGGA-----GACCCCAGAGGCAGGGGCTGCACTGAGCCTGCACCTCTCTGTCCGGCCCTGCCTGTGCCCCGCTCTCCAGGGGTGAAGGCGCCTCCCCATTCTGGTGCTCCTCAAAATCAGCCTCAGGACCTTGGAGTTCATTGTCATGTCATAGGCAGCTGG s panTro1.chr19 78992378 333 + 82489036 CCATCCGGAGCCC---AGCAGAGCACA--GGGCTTGTTAAACTCCTGCTGCTCACAGAGGGCATCACCCAAAAT--CACAAAGAGGACCGGACAGAGCC--ACAGAACCCCCCACTACTGCCCAGTGGCCCCCAAGCTGCACCAGGG-CCTGAGCCCCCAGAGACTACAACTCAGGCCTTGCTGTGTGGA-----GACCCCAGAGGCAGGGGCTGCACCGAGTCTGCGCCTCTCTGTCCGGCCCTGCCTGTGCCCCGCTCTCCAGGGGTGAAGGCGCCTCCCCATTCTGGTGCTCCTCAAAATCAGCCTCAGGACCTTGGAGTTCATTGTCATGTCATAGGCAGCTGG s rn3.chrUn 51794627 260 + 75822765 CCATCCAGGGTCTATAAGTAGTGTGCCAGCAGCTTGGTTAGCT-------CTCGCAATGAGCCTGCGCAGAAATGGTGCAGAGAGAACCACACGTACCCCGACCCAGCACCCTGACACTGCTCAGTAGACCTGGAG----ACCAGGA---------------GA---------AGGCCCTGCTGAACAGAAGATGGATCCCAGAGGAAGAAGCT-----------------------------------------TGCACTCGAAGGTGAAAGGC-----------CTGG-GCACATCCTCATCAGCCTCGGGGACTTCGAGCTAATTCTTACCTAATGAGCGGCTGG a score=34837.0 s hg17.chr17_random 1612600 424 + 2618010 GGCCATtgaacacttgagttgtttccacttttttttttttaangtcggattctccctcttgtcgcccagactggaatgncnannngtgnacngt----ngatcttnggctcactgcaacctccgcctcccgggttcaagcgattctcccgcctcagcctcccaagtagctgggactacatgtgcctgccatcatgcctggctaatttttgtatttttagtagagacagggtttcaccatattggtcaggctggtctcgaactcctggcctcaggtggtccacccgcctcagcctcccaaaatgctgggattacaggcgtgagccaccacgcccagcctgttgccacatttttgcttttgtgaataagctgctatgaa-cacctgtgtgcaagtatctctttgagaccctgcttccgattctctntgggc s panTro1.chr19 78992711 414 + 82489036 GGCCATtgaacacttgagttgtttccacttttttttttctaa-gtcggattctccctcttgtcgcccaggctggaatg------------cagtgacgtgatctt-ggctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacatgtgcctgccatcatgcctggctaatttttgtatttttagtagagacagggtttcaccatattggtcaggctggtctcgaactcctggcctcaggtggtccacccacctcagcctcccaaaatactgggattacaggcgtgagccaccacgcccggcctgttgccacatttttgcttttgtgaataagctgctatgaaccacctgtgtgcaagtatctctttgagaccctgcttccaattctct-tggGC a score=2521.0 s hg17.chr17_random 1613952 36 + 2618010 taggagtcatacagacagacacagagaaggcctcgt s panTro1.chr16 27871508 36 + 101535987 TAGGAGTCATAGGGACAGACACAGAGAAGCCTTCTT a score=48957.0 s hg17.chr17_random 1613988 539 + 2618010 gaggatggtggctaagcaggagggatgcagccacaagccaaggacgcccaggaCACCAGAATGCATGACTGCTGCTTGAAGCCACTCAGCATGTGGTCATTCATTACATCAGCTAAGCCANGGTCTGCACACACCTGCAAAGCAGGAACTCCGGAGCAGAAGCCAGACCCAAAGAGGGACAGTTTCCCCTCTGGCCAGGACCTCACCCCATCAACCCAGCTGCCCACGAGGCTGCTGCTCAAACATCCCAGGCCTACAGCTGCCAGCCTGTCCTGGGCTCAGCCGAGGGAAGAGGGAGCTGTGAACAACTCAGCCCTGGGCCCCTGCAGGGAGCCAATGANCCCCCTCCCTTTCTCCCtcatgcattcatcccttcatntcattcattcattcattcattcattncatccatccattcatCACTCCTTCAGTAAACAGGCCTGGCACCTCCCACGCGCCTAGATATGAATGCAGTATCAATGTGTCCCTTTCAGGGGCCCACAGTGGGTGGGTAAGCACACCCACAAATTCATAACTCC s panTro1.chr19 78994087 535 + 82489036 GAGGATGGTGGCTAAGCAGGAGGGATGCAGCCACAAGCCAAGGACGTTCAGGACACCAGAATGCATGACTGCTGCTTGAAGCCACTCAGCATGTGGTCATTCATTACATCAGCTAAGCCA-GGTCTGCACACACCTGCAAAGCAGGAACTCCGGAGCAGAAGCCAGACCCAAAGAGGGACAGTTTCCCCTCTGGCCAGGACCTCACCCCATCAACCCAGCTGCCCACGAGGCTGCTGCTCAAACATCCCAGGCCTACAGCTGCCAGCCTGTCCTGGGCTCAGCCGAGGGAAGAGGGAGCTGTGAACAACTCAGCCCTGGGCCCCTTCAGGGAGCCAATGA-CCCCCTCCCTTTCTCCCtcatgcattcatcccttcat-tcattcattcattcattcattcatt-catccatccattcatCACTCCTTCCGTAAACAGGCCTGGCACCTCCCACGCGCCTAGATATGAATGCAGTATCAATGTGTCCCTTTCAGGGGCCCACAGTGGGTGGGTAAGCACACCCACAAATTCATAACTCC a score=60307.0 s hg17.chr17_random 1614527 441 + 2618010 AGAGGGGACAGGAGGCCCAACAGAAGAATCACAAGGGAAAGCCNACAAGGGCCTCAGCTCTGCCTGGGGCAACAGGGAGAAGCCCCCTAGACTGGTGTCTGGAGGCCCATCCTGGACTGACGCAGAGGCTTTCCTGATGGGCAAAGAAGGAGGC-----CTCCCT-----CTGGTTTGTGAAGGAGAT---GGTGGCA--CAGAGAG---CTGGANGG-------TGGGATCCTGGGTTTTGTCCTCCAGGCGATAGACACAGGAGGGG--TGAGAACAGGCTCACCTTTATCAAACTTTGGTGGAAAATTGAAATTGTGTTCCAGGACAAGGACCAAGAAAGTCTGATGCTGGCCATGTTCAGGCTGTGCTGCT----CTGAGATACTGGGGCAGGCGGGCTTGGCAAGGTGGCCCCCATCCTCTCTCTCCCCATGTCCCCCTGCTCCTGCTCCTGCTCCATGTCTCCCCA s panTro1.chr19 78994622 439 + 82489036 AGAGGGGACAGGAGGCCCAACAGAAGAATCACAAGGGAA-GCCCACAAGGGCCTCAGCTCTGCCTGGGGCAACAGGGAGAAGCCCCCTAGACTGGTGTCTGGAGGCCCACCCTGGACTGACGCAGAGGCTTTCCTGATGGGCAAAGAAGGAGGC-----CTCCCT-----CTGGTTTGTGAAGGAGAT---GGTGGCA--CAGAGAG---CTGGA-GG-------TGGGATCCTGGGTTTTGTCCTCCAGGCAATAGACACAGGAGGGG--TGAGAACAGCCTCACCTTTATCAAACTTTGGTGGAAAATTGAAATTGTGTTCCAGGACAAGGACCAAGAAAGTCTGATGCTGGCCATGTTCAGGCTGTGCTGCT----CTGAGATACTGGGGCAGGCGGGCTTGGCAAGGTGGCCCCCATCCTCTCTCTCCCCATGTCCCCCTGCTCCTGCTCCTGCTCCATGTCTCCCCA s canFam1.chr18 28863492 417 + 66173745 AGAGGTGACAAGTGGTTCGGCAAAAGAATC--------------ACAAAGGCCCCGACTCTGCCTGGGGCCATGGGGAAGAGCCCCCAAGG--------TGGGGGCGGCCCTTGG--------GAAGGC------GATGGGAAGGGGAGTATGCAGGTGTCCCCTGGACACGGGCCTG----GGGGATCCACATGGCAAGCGTGGAGCTCCTGGA-AGCCCCACCTAAGATCCTGGGTTTTGTCCTTTATATGATGGAATCAGGAGGGGGACGGGAACAGTCTCGCTTTTAT-AAATGTTGGTGG-GAATGGAAGTATTTTTCCAGGAGAAAGTCCTAGAAGGCCTGATACAGCAAATTTAGAGGCTGTGTCACTCGGGCTGAGAGACTGGGGCAAGTGGGCAT---------ctctccctctcccccctccccat---ccccagctcccattccatcttcctcccttctct a score=10635.0 s hg17.chr17_random 1614968 80 + 2618010 CTCCCAGCTCCT----CAGTGGCCAAGTTTGGCGTCCNTTCAAGAAGTGGCCGAAACCTCTAAAGGAACTTCACCCCG----CAGGG------C s panTro1.chr19 78995061 79 + 82489036 CTCCCAGCTCCT----CAGTGGCCAAGTTTGGCGTCC-TTCAAGAAGTGGCCGAAACCTCTAAAGGAACTTCACCCCG----CAGGG------C s mm5.chr11 118653602 72 + 121648857 CTCCTCACTCCT----CAG-GGTCAAGCTCCAAGTCC-----------------CAGCCCTGGAGAAACTTCATCCTGTGCTCAGAGTCCAGCC s canFam1.chr18 28863909 80 + 66173745 ccccccactccctGCATGGTGGTCAAGCCCACTGACC---CAGGACACAGTCT-GGTCCCTCCGGGGACCTCACCGTG----CAGAG------C a score=202039.0 s hg17.chr17_random 1615048 1382 + 2618010 AGGCCCTGCCCAAGGATGTCTCCAC---CACCCAGAGTCCAGTTCCGGCCCTC--------------------GACACCC---------CA-CCCCCATCCCAG----------------AGTCTGGAAT---GATGCA-----------GCCCCCAGCTCCTGGGGTCCCCAC-GTGGAGCCCCTGCTCCCAGCAAACCAGCGAGGGAGGCCTGGGGGG--AGGGAGGGGCTAAGAGGGAG--GGGAGCGCCTGGCCGTCCCCAGAGAGTACAGCTAA--CCCACAGCACATNAATCCTGTTAAAAAATTAATCCTCATTTAGCCGGGAGGCAAGGCAGCCGC---TGAGATAAAGCCCCTGAGAAGTAATAAAAGGCAACAGCAATTGATAAAGTGGTGAGGC-CGCTCATAAAACCCTGCTGCAGTGAAGGTC-GGGCAGGCCCCAGGAATCGGAGAGTAACCAC--------TGCCAGG--------TGGNGGGCNGGGGGGCATTGCTTACAAGCCCCAGCC---------------CCTGC-------AGAGGACGACCCCCTTGGGNCAACAGANGCTGATGCTGATGGTGGACAGAGGGAGAAAGGAGGGAGGCTGCCTTTCTCAGCTCCTCCCTGCTCGGCCTCACTGGACGACCGTGGCCCTTTGGGAAGGAANTCA----------------------------------------------------------------------------------CCATCCT-TGGTCC-TT--GTCTCTCTCC-----------------TAA------CATCATAGNCCATGAAAGATCACAGCNCCTCCTGGGGCCCAGCCGGTC------CCAGAGTAGAGCTGGTGAGC--CTGGGCCTGTCTCCNTGTGGCTCCTGGTGGNCCCC-CGCTGTCCCCCACACACTTGTCCCA-----------------------GGGATAGGAGGATGGAGAGCCCACCCCAGCCCCC-----ACACCAGGGACTCACCTGGA-ATCCTCCCA---GACGGCAAGT-GTGGTCACCANCTGCAAT----TGGCATNCTGCCTGCTGGGGAAGCCTCATTGCCATGTCCTCACGGGGACGTTCCACTC-----CAGCCAAATTGCATAACCAGGCCA--TTCCTCCTTCAGGGTNCCCCAAAAGC---------CAATAATGG-----------TCCCCACA------------------AAAGGGCACTGGACTGGAGGCAGGAGAGACCCATTGAGACCCAATATTGTACCACTAGACATGGTGGAAAATTAG-GGGAGGGGGCTCGATGCCTCCGCTACTCCAACACTGGCGACGACCCACAGGTGTAAGTGCCCAGCTTCCAAGCCCACCCCCCNTCACCAGGGCATCGAGGGCTCCCT----GGAAGCACCGGTCT-GGGGCTGCAC----CC-------TGGCCAGAGAAGGAAGAGAGTGATTCCCATTACTG---Tatcactccaactgctgcctggagactaaggagaagcaagg-agaccggtcagagggcagttgcnaatggtcctgacCATGCTAACTTCACCNCACGTTCTCTTTCatttatgcactgaagaatcatttattaaacacctacntgtgtgccaggcatcagaccaggagctcgggatacagtgctgCTCACAGCC s panTro1.chr19 78995140 1365 + 82489036 AGGCCCTGCCCAAGGATGTCTCCAC---CACCCAGAGTCCAGTTCCGGCCCTC--------------------GACACCC---------CA-CCCCCGTCCCAG----------------AGTCTGGAAT---GATGCA-----------GCCCCCAGCTCCTGGGGTCCCCAC-ATGGAGCCCCTGCTCCCAGCAAACCAGCGAGGGAGGCCTGGGGGG--AGGGAGGGGCTAAGAGGGAG--GGGAGTGCCTGGCCGTCCCCAGAGAGTACAGCTAA--CCCACAGCACAT-AATCCTGTTAAAAAATTAATCCTCATTTAGCCGGGAGGCAAGGCAGCCAC---TGAGATAAAGCCCCTGAGAAGTAAGAAAAGGCAACAGCAATTGATAAAGTGGTGAGGC-CGCTCATAAAACCCTGCTGCAGTGAAGGTC-GGGCAGGCCCCAGGAATCGGAGAGTAACCAC--------TGCCAGG--------TGGGGG--CGGGGGGCATTGCTTACAAGCCCCAGCC---------------CCTGC-------AGAGGACGACCACCTTGGG-CAACAGA-GCTGATGCTGATGGTGGACAGAGGGAGAAAGGAGGGAGGCTGCCTTTCTCAGCTCCTCCCTGCTCGGCCTCACTGGACGACCGTGGCCCTTTGGGAAGGAA-TCA----------------------------------------------------------------------------------CCATCCT-TGGTCC-TT--GTCTCTCTCC-----------------TAA------CATCATAG-CCATGAAAGATCATAGC-CCTCCTGGGGCCCAGCCGGTC------CCAGAGTAGAGCTGGTGAGC--CTGGGCCTGTCTCC-TGTGGCTCCTGGTGG-CCCC-CGCTGTCCCCCACACACTTGTCCCA-----------------------GGGATAGGAGGATGGAGAGCCCACCCCAGCCCCC-----ACACCAGGGACTCACCTGGA-ATCCTCCCA---GACGGCAAGT-GTGGTCACCA-CTGCAAT----TGGCAT-CTGCCTGCTGGGGAAGACTCATTGCCATGTCCTCACGGGGACGTTCCACTC-----CAGCCAAATTGCATAACCAGGCCA--TTCCTCCTTCAGGGT-CCCCAAAAGC---------CAATAATGG-----------TCCCCACA------------------AAAGGGCACTGGACTGGAGGCAGGAGAGACCCATTGAGACCCAATATTGTACCACTAGACATGCTGGAAAATTAG-GGGAGGGGGCTCGATGCCTCCGCTACTCCAACACTGGCGACGACCCACAGGCGTAAGTGCCCAGCTTCGAAGCCCACCCCCC-TCACCAGGGCATCCAGGGCTCCCT----GGAAGCACCGGTCT-GGGGCTGCAC----CC-------TGGCCAGAGAAGGAAGAGAGTGATTCCCATTACTG---TATCACTCCAACTGCTGCCTGGAGACTAAGGAGAAGCAAGG-AGACCGGTCAGAAGGCAGTTGC-AATGGTCCTGACCATGCTAACTTCACC-CATGTTCTCTTTCatttatgcactgaagaatcatttattaaacacctac-tgtgtgccaggcatcagaccaggagctcgggatacagtgctgCTCACAGCC s mm5.chr11 118653674 1172 + 121648857 TGACCCTCCCC----ACACCCCTGT---CTCCCTGATACC---CCCATTCCTA--------------------CACA------------CA-CACCCATCCCAG----------------AGTCTGAAACCGAGAGGCACCCA--CACACACCCCCAGTCATAGGTGTCCCAACTGTGG---CTGTGCTCCCTGAAAACCAGCCAAGAAGGCCTGAGATG--GGTGA-GGACAGAGAGGGAGGAGGAAGCACCCTG-TGTCCCTGGATAG-ACAG-TGA--GCCACAGCACAT-AATCCTGTTAAGATATTAATCCTCATTTATCCGGGAGGAGAGGCAGCGGCGGTGGAGATAAAGCCCCTCAGAAGCAGTAAAAGGCA--AGCTGCTGATAAAGTGG-GAGGC-CACTAATAAAGTCTCACCGT-GCAAAGGTC-AGTCAGTGCCTGGCAATCAGAGAG---CCAC--------CTCCA----------------------GGGCTCTGGCCACAGAAGCCAGACGCATTAGGAGCCGTGCCTGC-------GGAGAGCGA-----------CAGCCAG-CCTG--------GATGTCCAGGGGGCAGAGAGGAGGATGCTCGCTTTCTTACACCCACCCCACCAG------CTCGATGGCC-TGGAGTTGGGAGGACCCACTCA----------------------------------------------------------------------------------CCTCCCCATGCTCC-CTACGGGTCTCTCC------------------AA------AACCACGG-TCAT--AAAATCACAGT-CCTCTTGATGACTAGATGGCCTGGTCTCCAGAGCATAG-TGATAAAC--TGGGACC--------TGCTGTCTCTGCTAG-GCTC-TGCTGT-CCCCGGACTCCTGTTCCA-----------------------GAAGCAGGAAGA---ACAGTCCCTGGCGACACCCTTTGTACCACAGGAATTCCCCCAAG-GACATTCAGAGTGACAGCATGTCCTAGACCCTGTCTGGAATAGCATGGAAT-TTGTCT-TTCTCAAGGTCTAGGTCTTTCCTCCCCTTGGGGACGTTCTACTC-----CAGCTAAGTTACACAGTTAATCTGGTTTACTGCCTCTGTGT---CCTAAAGCAAACTGTAACAACCATGACACC------TTTCCCACACACATACACACACCCTCCAGAGGACATTGGATTAGGAGTCTGGGGAGCCTGTCCTGATCCAATATTGC---------------------------------------------------CTCCAACGGAAGGGAT----------------------------AAACTCTCTCCCTGTCACCATGGTATC--AGGATCCCC----GGCAGCA----------------------------------CCAGAGAAGGAGAAGA-------------------------------------------------------CAGGG----CCCACCAGAGCGCCGTGAAGAAC---------------------------------------------CACTTGAGCATCCACTACTAAA-GGCTGC-CATGTGTCAGGCCTTGGGCCGGGAGTGGGGG---CTGTGCTGCT--CAGCC s rn3.chrUn 51800420 1344 + 75822765 AGACCCAGCCTGGAGAAACCTCATCGTGTGCTCAGAGTCCAG-CCTGGCCCTCCCCCACGCCCCTGTTCCCCACACACCCCTCGCCCCACA-CCCCCATTCCAACACACACACCCATTCCAGTCTGAAATTAAGAGGCACCCATGCATGCTCCACCCATCATAAGTGTCCTAGC---------TGTGCTCCCTGAAAACCGGCTGGGAAGGCCTGGGGTG--GGTGA-GGACAGAGAGGGAGGAGGAAGCACCCTG-TGTCCCTGGATAG-GCGG-TGAGCCCCACAGCACAT-AATCCTGTTAAGATATTAATCCTCATTTATCCGGGAGGAGAGGCAGCCGCGGCTGAGATAAAGCCCCTCAGAAGCAATAAAAGCCA--AACGGATGATAAAGTGGGGAGGC-CGCTAATAAAACCCCACAGT-CCAAAGGTCAAGTCAGCGCCTGGCAATCGGCAGG---CCAC--------TGCCGGGGCTCTAGCCGCAGGAGTCGGATGCATT------AGGAGCCATT----------------CCTGA-------GGAGAGGGACAGC-------CAGCCTG-GATGATACTG------------GGGCAGAGAGGAGGAGGTCGGCTTTCTTAGATCCTCCCCATCAG------CTCGGTGGCCTTGA----GTAGGGAAGGA-TCACTTGGTTCCCCCACCCTCACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCACCCCCACCCC-CACCCC-CA--TCCCCACCCCACCCCAGTGGGTCTCTCCAA------AACCATGG-TGGT--AAAATCGCAGC-CCCCCTGATGACTGGATGGTCTGGGCCCCAGAGCATAG-TGATGAACTGTGGGACC--------TGCTGTCCCTGCTGG-GCTC-TTCTGA-TCCCAGACTCCCGTTCCA-----------------------GGAGCAGGAGTA---ACAGTCACTGGTAACACCCTCTGCACCACAGGAGTTC-TCCCAAGGATATTCTGAGTGACAACATGTCCTAGACTCTGTCTGGAATAACATGGGAT-TTGTCT-TTCTCAAGGTCCAGGTCACTCCTCCCCTTGGGAACTTTCTACTC-----CAGCTAAGTTACACAATCAATCCGCTTTATCACCTCTGTGT---CCTAAAGTAAACTGGGTCAACTATGACACC-------TCCCCCCA--------TACACCCACCAGAGGGTGTTGGATTGGGGGTCTGAGGAGCCTGTCCTGACCCAGTA-TGC---------------------------------------------------CTCTAACAGAAGGGAT----------------------------AGGCTCACTCCCGGGCACCAGGGCACC--AGGGTCCGT----GGCAGCCCTGACCC---AATTGCA-----------------CCAGAGAAGGAAAGAG-------------------------------------------------------CAAAGCAGTCCAGACAGGGCCCATGGGGGTGCCATGCAGAAC-----------------------------------CACTTGAGCATCCTCTACTAAAGGCCTGC-CAGGAGTCAGGCCTTGGGCCACGAGCTGAGG--ACTGTGCTGTT--CAGCC s canFam1.chr18 28863989 1282 + 66173745 -----CATCCC-----------------TACCCTGGGACAAA-TGGGGCCCTCCCT-----------------CCCACCC---------CACCCCCCATCCTGG----------------AGTCCGGAGCCAAGTGGCC-CCA-------GCTTCCCGACCTCAGGACCCCACC--------------TCCCTGCACACCAG-GAGGGAGGCCTGGGGGGAAGGGGAGAGGCCGTGAGGGAG--GGGAGCCCCCGG-CGTCCCCAGGGAGTACTGCTAA--CCCACAGCACAT-AATCCTGTTAAAATATTAATCCTCATTTAGCT-GGAGGCGAGGTGGCCGC---TGAGATAAAGCTCCTGAGTGGTAATAAAAGGCG-CAGCAATTGATAAAGTGGATCGTCGCACTAATAAAATCCCGCCATCGTGAAGGTCGGGTCAGGCCCCTGTCATCGAGAA----CCACCAGGCAGGTCCCAGC--------CGCCGGGCTGGCAGAGGTAGGGGGTGACCGCCTCCC---------------CCGACAGCGACAGGAGGGCGCTCACCATGGG-GGGTCTG-CTCGCAGCTCCAG-----CAGAGGGAGCAGAGGGGG--GCTGACTCTCC-----------------------------------------TTGGGAAGGAA-CCC----------------------------------------------------------------------------------CCAGCCT-TGGGCCACT--GTCTCCTCCC-----------------CCAGGGACCCGACCTGG-TCAC-AAAGATGGTGGGGCCTCCTGGCG----------------------GCACACCTGCTGAGC--CCAGGCC--------GGT--------CTGG-CCTCTCACTGCCCCCCAGACACCGGTCCCAGGCTCAACGGCTCAGGCCTCCCCGGGACATGAGGATGAAGCATCCAATGCAGCCCCA-----GC----GGGGTGCCCAGGGACCGCCTCCCA---GATGGCATGG-CCACACCC--------------AGGGCC-CTGT---TTGGGAAAGGTCATCTGCTCAAACTCTGTGTTCCCGTCCCTCCTGAAGGCAGCTTAACAACATAATCAGGCTG--CTCTCCATTCAGCGC-CCCCCAAAGCCAATAGTG-CATCAGCGACACCACTGCTTTCCTTCCC------------------AAAGGGCA-TGGACCAGGCATCGAGGGAGACCGTT-AGACCCACATTTGC--CACTTGTCACCGTGGAAATGGAGAGGGCGGGCTCAGGACTTCCACACTCCCCCAGTAGAGGGGACAGCCCACAGCTG-GAGCGCCCGCCCGT-GTGCCCAGCCCCC-CCACCAGGGCATC------TCCCTGGCAGGCAGCACCAGCCCAGGGGCTACATGGGGCCGGGGGGTGGGGCAGATGGGGAGACAA-GGATTCCTGGTTTGGAGAAACCACTCCAACTGCTGCATAGAGACAAAGGAGAAGCCACG-AGATCTGTCAGAGTCCAGACGC---------------TGCTCGTGCCACC-CATGCCTTCTTGCCTTCgt------------------------gcctac-tgtgtgccaggcaccacacc---agatggggacagagcCTTGCTCATGGCC a score=102963.0 s hg17.chr17_random 1616430 819 + 2618010 TTGTAGGAGAGACACATAAACAATTGCAATAGAATTCCTTGTATCAGGTTATTAATGAGAACAGGAAGTTAGCGGCAAAGCTGACCTTGTGGAGGACAATGCCTGCCTTATGG---CCCTCGGCCACCAGCTGAGACACCAGCAGGCCTGGGCAGGCCAGCCCCTGGCCCAGAGGCTGGGTCCCTAGGGCCCGAGCCCCCTACATGGCTCATCTGCATGGGGCAATCTCTACCCGTGCAAGCGTCAAATCCACCCGGTCCCAAGGACAAGGAGGCCTCTNGGGATCAAGTCCTGCTGGGCACCCAGAGCCCCCTAAGCAAGAAAAGCAGTGAATAAACACTTTCCTATGTGTCCATAAGGAGGA----GCCCTCTCCCCTACAGACACTNG--GNTTTGCCCATAACCACTGCACCCACAGTGGCCATCAGCCCTACCTCTCTAAGCTCACATCCAT---CTGCCTTAGGTGAGGAGTCCTCAGCTTCAAGGACACTGGAATGACGACTT-----TACGAATGCTTTGCCCCCcacccaggtaacaaggagcccacacacctcccnagatcttgatctctaataacatctccaataaaacaagccagggctccttgagaaatgctggattnctagggcagaggaaatatataagataagcctggagcatcttatagtgctcaaaaCACATacatccacacatgcacacatgt-----------------acacacacttgcacacat---------gcacacacgtgcacacacccnacnttgcacacagaaac--ata---cacacgcgtattcacacacatatatg-catacgcgcatgcatgcatgcacgcacatgcacaaacat------- s panTro1.chr19 78996505 812 + 82489036 TTGTAGGAGAGACACATAAACAATTGCAACAGAATTCCTTGTATCAGGTTATTAATGAGAACAGGAAGTTAGCGGCAAAGCTCACCTTGTGGAGGACAATGCCTGCTTTATGG---CCCTCGGCCACCAGCTGAGACACCAGCAGGCCTGGGCAGGCCAGCCCCTGGCCCAGAGGCTGGGTCCCTAGGGCCCGAGCCCCCTACATGGCTCATCTGCATGGGGCAATCTCTACCCGTGCAAGCGTCAAATCCACCCAGTCCCCAGGCCAAGGAGGCCTCT-GGGATCAAGTCCTGCTGGGCACCCAGAGCCCCTTAAGCAAGAAAAGCAGTGAATAAACACTTTCCTATGTGTCCATAAGGAGGA----GCCCTCTCCCCTACAGACACT----GGTTTGCCCATAACCACTGCACCCACAGTGGCCATCAGCCCTACCTCTCTAAGCTCACATCCAT---CTGCCTTAGGTGAGGAGTCCTCAGCTTCAAGGACGCTGGAATGACGACTT-----TACAAATGCTTTGCCCCCcacccaggtaacaaggagcccacacacctccc-agatcttgatctctaataacatctccaataaaacaagccagggctccttgagaaatgctggatt-ctagggcagaggaaatatataagataagcctggagcatcttatagtgctcagaaCACATACATCcacacatgcacacatgt-----------------acacgcacttgcacacac---------acacaaacgtgcacacaccca--tttgcacacagaaac--ata---cacatgcgtattcacacacatatatg-catacgcgcatgcatgcacgcacgcacatgcacaaacat------- s mm5.chr11 118654846 658 + 121648857 TCACGGGAGAGATAC--AGTCGTTTACAGT--CATCACTTA---CAGTCTACTGTGGAGGACAGGATGCTGCCTGAACAGCTGGGCCTGTGAGGGACA-------------------------------------GCACCAGAATGTCC------GTCAGCCGTTAGCACTGAGGT--GTTTCTCCAGGCCCGAG-TCCATGTGTGGCTTGGGTGC-------------------------TGTGAGTTCTACCGAGTCTCCAGACCAA-GAGGCTCCT-GGGATGGGGTCT--CAGAGCACTAAGGGTGTCCTCGGGAGGAAAAGCAG-------------------GGGTGCAGTCGAGATG----CCCCCCTGCATCACACACCCAGGACAGTGTG-CCACAGGCACCCCATCCACAGTAGCACAGGGCTCTGCTACTCCAGACTCACACCTG----CTGACTAAGCTGAAGG---CCTGACTACACGAGCA---GATCTGTGACTT-------CCATTGCTGG-----------AGGCAAAGAGCAGCCCAGA-----TCC-GGGTC-TGGTTTCTCTAAACATGCCTG--AGTCTAAGACAGGG--GCTGGAGGCAT---------CTGGGTGAGCAGGA----ATCAGCGGGGCCTGGGTGTGCCCAGAGAGTTAGGAACTGCTTGACACACACACGCACACACAC-----------------ACACACACACACGCACAC---------ACACACACG--------------CATGTGCACAAGCAC--ATATATCAGACGCTTGTGGACATGCATA----------GGACATGCATGTGTGAACACATGTACACAAATAT------- s rn3.chrUn 51801764 720 + 75822765 CCATGGGAGATACA---AACATTTTACAGT--CATCACTCA---CAGTCCACCACAGAGAACAGGGTGCAGCCTGAAGAGCTGAGCCTGTGAGGGACA------GCACCAAAGAGTCCATCAGCCATCAG---------CAGTGGGCT------------------------------GGTTCTTCAGGCCCCAG-TCCATGTGTGGCCCA----CACAGGAAAACTGACACCGACGCTCGTGTCAGTTCTACCCAGTCTCCAGACCAA-GGGGTTCCT-GAGATCAGGTCT--CAGAGCACT-AGGGTGTCCTAGGCAGGAAGAGTGG-------------------GAGTGCAGCCGAGATGCCCCGCCCCCTGCATCGAACACACAGG---------ACACAGATGCCACACCCACAGTCGCACAGGGTTCTGCTTCTCCTGGCCCCCACCCACCTGCTGACTAAGCTGAAGA---CCTGGCTGCAAGATCA---GACCCATGACTTGGAAGTGCCATTGCTGG-----------AGGCGAAGAGCAGCCCAAA-----CCT-GGGCC-TGGTCCCCCTGAACATGCCTG--AGTCTAAGACGGGG----------------------CTGGAG-ACAGGAAACATTTGGGT----CTAGGAGTAAC--AGAGAGTGAGGAACTGCTCGACACACACGTGTACACACGTGTGCGCAAGCAAACATAACAGACGCTTATGTGCATGTGCATAGGACATGAATGTGTGAATA------CATGTACACAAATATCAATA---TACACACCTGTAAGCATACATGTAAGACATGTGTGAATGTCTGTGAGTGTGTGTGTGCTCGCATATGAGAAAT a score=3137.0 s hg17.chr17_random 1617249 19 + 2618010 acatgcatacacacacaca s panTro1.chr19 78997317 17 + 82489036 acatgcat--acacacaca s mm5.chr11 118655504 19 + 121648857 CAATACACCCCTGTATACA s rn3.chrUn 51802753 19 + 75822765 ACACACACACACTCACACA a score=8120.0 s hg17.chr17_random 1617268 47 + 2618010 cttgcacacagacacgcgcactcgtacacacacacaTTTGCACACAC s panTro1.chr19 78997334 47 + 82489036 cttgcacacagacacacgcacTCGTACACACACGCATTTGCACACAC s rn3.chrUn 51802772 46 + 75822765 CTCACACACACA-ACTCTCACACACACATACACACACATACACACAC a score=2183.0 s hg17.chr17_random 1617315 23 + 2618010 TGCAgggaaacgtgaaacagatt s panTro1.chr19 78997381 23 + 82489036 TGCAgggaaacgtgaaacagatt a score=52990.0 s hg17.chr17_random 1617338 412 + 2618010 aggagccatctgaaagactgcccagcggccaaaagtggaacaattggagctgcaaaatagagaaatacaggattaccactcaaagtataaaatagttatcagtccatactgacataaacgagtcactgaatgaataaataaatgggatggggggcaaacccccnacacagaattccaa-----gtagtctatgcagccactccattngtccaggagcgtgacccctcaccccgtg-agcgtgagtggcatgca-tggccnttccttccaaagaacagggtatgaagggggtggagggcaggaaaga-cagcaacctc-cagggagacacccgtgac-tttcctcagctgcgtgacccaggccacgtcaccagtgataagccctgttgatagcgtgtg-ccttgatgtgacctggtgggaacgc s panTro1.chr19 78997404 409 + 82489036 aggagccatctgaaagactgtccagtggccaaaggtggaacaattggagctgcaaaatagagaaatacaggattaccactcaaagtataaaatagttatcagtccatactgacataaacgagtcactgaatgaataaataaatgggatggggggcaaaccccc-acatagaattccaa-----gtagtctatgcagccactccatt-gtccagaagcgtgacccatcaccccgtg-agcgtgagtggcatgca-tggcc-ttccttccaaagaacagggtatgaagggggtggagggcaggaaaga-cagcaacctc-cagggagacacccgtgac-tttcctcggctgcgtgacccaggccgcgtcaccagtgataagccctgttgatagcgtgtg-ccttgatgtgacctgatgggaacgc s canFam1.chr18 28865428 372 + 66173745 aggcgccaacggagagagctccgggtggccagagatggagcaatcagagcaacaaaat------------------caatc-aggtggcagtgggtta------catactggtatcaattattgaacagatgaataaacaa---ggagaagagacaaatct---gctcagaattccaatgtccgtag-atactcggcccccacagaggt---gaagcatgacccctcaactcctgaagagggggtggcacacagtgacc-gtccttccaaagaagag--------------agagggcaagaaagagtggctgccccgcagaaaggc-ctggtgacactatcttggccaggggatcaaggccacagcagcagtgatgagtcatgttgataggatgtacccttgatatgatataatgggaatga a score=27153.0 s hg17.chr17_random 1617750 327 + 2618010 ctccntgtttggttgctttttgttttttgtttttntgttttttttgagatggaatttcactcgctgcccanggctggagtgcaatggcgtgatcttgggtcactgcaatctccacctncctgggttcaangcgattctcctgcctcagactcccaaatagctgcatgccaccatgcccggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggctgttctcgaactcctgacctcaggtgatccaccctccacagcctcccaaagtgctggaattacaggcgcgagtcactgcgcccggccaggcaggaac s panTro1.chr19 78997813 315 + 82489036 ctcc-tgtttggttgttttttgttttt--------tgttttttttgagatggagtttcactcgctgccca-ggctggagtgcaatggcgtgatctcgggtcactgcaatctccacct-cctgggttcaa-gcgattctcctgcctcagactcccaaatagctacatgccaccatgcccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctgttctcgaactcctgacctcaggtgatccaccctccacagcctcccaaagtgctggaattacaggcgcgagtcactgcgcccggccaggcaggaac a score=37801.0 s hg17.chr17_random 1618077 208 + 2618010 agctctttatctctgcaaacctcctccccaaaaaccataacccca-----------gcctggcgataaggaaaacatcagataaatcctaattgagggacattctacaaaacacctgaccagccctcctcaaaactgtcaatgtcatc-aaaaacaaggaacagctgagaaactgtcacagccaagaggagtctgaggagacc---caaggaccgaataccat s panTro1.chr19 78998128 208 + 82489036 agctctttatctctgcaaacctcctccccaaaaaccataacccca-----------gcctggcgataaggaaaacatcagataaatcctaattgagggacattctataaaacacctgaccagccctcctcaaaactgtcaatgtcatc-aaaaacaaggaacagctgagaaactgtcacagccaagaggagtctgaggagacc---caaggaccgaataccat s canFam1.chr18 28865800 218 + 66173745 ggctttttatctctgtgcccttcctcccaaaaacccataaccccaccccccaccccgtctaatcaagagaaaaagaatagataatttc-aactgagggacattctacaaagcgcctgcccagcactcctctgaaccgtcaaggtcatcaaaaaacaaggagagtctgagaaactgtcacggccaagaa----cccaggagacctggtgatgacctaatgggat a score=40429.0 s hg17.chr17_random 1618285 452 + 2618010 gCATTCGTTgtccaagaggttgaggctgcagcgagcagagattgtgccaccgcactccaggctggacaacagagcaagaccctgtttcaaataataataaCTTATCagttgggcatggtggctcatgcctgtaatcccagcactttaggaggctgagacgggtggatcacctgaggtcaggaattcaagaccaccctgggcaacatggcgaaaccccatctctactaaaaataaaaacaaattagccgnggcgtggtggcgcacacctgtaatcccagctacttgcgaggctgaggcaggagaatcacttgaacccntggaggcagacgttgcagtgagtggatattgcaccattgcactcaagcctgggcaacgagtgaaattctgtctcgaaaatata---aataataataataataaCTtatcaatgctggctccttaattgtgtaaagtac s panTro1.chr19 78998336 453 + 82489036 gCATTCGTTgtccaagaggttgaggctgcagcgagcagagattgtgccaccgcactccaggctggacaacagagcaagaccctgtttcaaaTAATAATAACTTATCagtcgggcatggtggctcatgcctgtaatcccagcactttaggaggctgagacgggtggatcgcctgaggtcaggaattcaagaccaccctggacaacatggcgaaaccccatctctactaaaaataaaaacaaattagccg-ggcgtggtggtgcacacctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaaccc-tggaggcagacgttgcagtgagtggatgttgcaccattgcactcaagcctgggcaacaagtgaaattctgtctcgaaaaCATAaataataataataataataaCTtatcaatgctggctccttaattgtgtaaagtac a score=40134.0 s hg17.chr17_random 1618737 320 + 2618010 caccctaatagtcaacattaataacaggggaaanctgggtgcaaggaacgtgggnaactctatattgtcttcgcaatttttctgcaaacctaaaactgtcgtaaaataaaaagt---------------tCTGTCAAAACAGAAAGTATGTTAGATATTTGCATGCATTTGTCCTCTTNAATTTatttactcatgccacaaagatgcattaagcacctatgctgtgctggacactctcccaggctctggtgatacc-atgatgagctaatatggcaggcccctgcttcagagagcCTGACCTC-ACCGTCTACCTGAAGGCTCGCATGAAGAGTATG s panTro1.chr19 78998789 317 + 82489036 caccctaatagtcaacattaataacaggggaaa-ctgggtgcagggaacgtggg-aactctatattgtcttcgcaatttttctgcaaacctaaaactgtcgtaaaataaaaagt---------------tCTGTCAAAACAGAAAGTATGTTAGATATTTGCATGCATTTGTCCTCTT-AATTTatttactcatgcaacaaagatgcattaagcacctatgctgtgctggacactctcccaggctctggtgatacc-atgatgagctaatatggcaggcccctgcttcagagagcCTGACCTC-ACCGTCTACCTGAAGGCTCGCATGAAGAGTATG s canFam1.chr18 28866130 325 + 66173745 caccgcagaatgtaccttggaggaggggaggaaacctggcccggggtaggaagg---cacttgaccacctttgcaatgtttccataaacctaagatcattatcgaataaagggttgatttcaaacaaTGTCTTCCCTAACCAAAAGTACCAAAGATATTTGCACAAATTTCCCTTCTA-AGCGTatttattcatccaacaagtacaggttgagtgcctcc-ctgggctggccattgt-gcaggctctggggaacctgacaatgaac-aatacggcaagtcccgtcttcagggGTCGTCAGGTCTACCCTCTACCTGAACA-----ATGACCAGTGTG a score=34379.0 s hg17.chr17_random 1619057 395 + 2618010 GGGAAATTTCAGGTGACAGATACAAAGGACAAATGTTTACCCAAAAAAATATATTCTAggcctggcacagtggctcacgcctagaatcccagcactttggaagacagaggagggtggatcatctgaggtcaggagttagagaccagcctagccaacatggtgaaaccccgcctctactaaaaatccaaaaattagccgggcgtggcggcacaagcctatagtcccagctacttgggaggctgaggcaggagaatcgcttgaaactgggaggcggaggttacagtgaactgcgatccagcctggggcctgggcaacaagagggaaactctgtctaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatTCCAAAAGTATAAATT s panTro1.chr19 78999106 382 + 82489036 GGGAAATTTCAGGTGACAGATATAAAGGACAAATGTTTACCC-AAAAAATATATTCTAggcctggcacagtggctcacgcctagaatcccagcactttggaagatggaggagggtggatcatctgaggtcaggagttagagaccagcctagccaacatggtgaaaccccgcctctactaaaaatccaaaaattagccgggcatggcggcacaagcctatagtcccagctacttgggaggctgaggcaggagaattgcttgaaactgggaggcggaggttgcagtgaactgcgatccagcctggggcctgggcaacaagagggaaactctgtctaaaaaaaaaaaa------------atatatatatatatatatatatTCCAAAAGTATAAATT a score=13279.0 s hg17.chr17_random 1619452 128 + 2618010 CAGAAGAATGTGCATTGTGGCCAGACTCCACATGCTCAGCATGAAGTGGATGGGGGAAATTTCAGCTGACAAATATAAAGGACAAATGTTTATCAAAAAAAATATATTCCAAAAGTATAGATTCAAAA s panTro1.chr19 78999488 127 + 82489036 CAGAAGAATGTGCATTGTGGCCAGACTCCACATGCTCAGCATGAAGTGGATGGGGGAAATTTCAGCTGACAAATATAAAGGACAAATGTTTATCAAAAAAAA-ATATTCCAAAAGTATAGATTCAAAA s canFam1.chr18 28866455 80 + 66173745 CAAGAGAG--------GTGGC----------------------------------GAAGTCACGAGCGACAAAGATAAATGGTAAATGCCTATGAAAAAGATTACACAC------TATAGATTCCAGA a score=15199.0 s hg17.chr17_random 1619580 160 + 2618010 GAATATGCATTGTAGCCAggctcacacctgtattcccagcactttgggaggccaaggtgggaggatcacttgagcccaggagttcaagaccagcctggacaatatagagagaccccgtctctgtttttcaataaataaataagaaagaaaaaaaaGGAAA s panTro1.chr19 78999615 160 + 82489036 GAATATGCATTGTAGCCAggctcacacctgtattcccagcactttgggaggccaaggtgggaggatcacttgagcccaggagttcaagaccagcctggacaatatagagagaccccgtctctgtttttcaataaataaataagaaagaaaaaaaaGGAAA a score=9062.0 s hg17.chr17_random 1619740 52 + 2618010 AAATATGCATTGCAACATACATAAGGAACCAATTAAACCATAAGAGTTAACG s panTro1.chr19 78999775 52 + 82489036 AAATATGCATTGCAACATACATAAGGAACCAATTAAACCATAAGAGTTAACG s canFam1.chr18 28866535 52 + 66173745 ACAGACACACTGCAAAAGACATACAGAGCCGATTAAGCCCTAAGATTCCATG a score=56384.0 s hg17.chr17_random 1619792 624 + 2618010 CTGggctgcgcacagtggctcatgtttgtaatcccagcactttgggaggccgaggtgggaggatcacttgagcccaggagttcaagaccggcctgggcaacataaggagaccctgtctctactgaaaatttaaaaattggccgggtgcggtggctcacacctgcaatcccagcactttgcaaggccaaaacgggaggatcaagaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactgaaaacacacacaaaaaaattagctgggcatggtggcaggcccctgtagtcccagctactctggaggctgaggcaggagaatggtgtgaacccgggaggctgagcttgcagtgagccgagatcgcaccactgcactccagcctgagcgacagagcaagactccgtctcaaaaaaaaaaaaaga-----aaaaaagaaattaaccaggtngtggtggtgtgcgcctgtagtcccagctatgcgggaggctgaagtaggagaatcacttcagncccgggagatagaggctacagcaagccgtgatcatgccactccactccagccntaggcgacagagcgagaccctgtctcaCACACACACACACACAAAATTC s panTro1.chr19 78999827 626 + 82489036 CTGggctgcgcacagtggctcgtgtttgtaatcccagcactttgggaggccgaggtgggaggatcacttgagcccaggagttcaagaccggcctgggcaacataaggagaccctgtctctactgaaaatttaaaaattggccgggtgcggtggctcacacctgcaatcccagcactttgcaaggccaaggcgggaggatcaagaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactgaaaacacacacaaaaaaattagccgggcatggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggtgtgaacccgggaggctgagcttgcagtgagctgagatcgcaccactgcactccagcctgagcgacagagcaagactccgtctcaaaaaaaaaaaaaaaaaaagaaaaaagaaattaaccaggt-gtggtggtgtgcgcctgtagtcccagctatgcgggaggctgaagtaggagaatcacttcag-cccgggagatagaggctacagcaagccgtgatcatgccactccactccagcc-taggcgacagagtgagaccctgtctcaCACACACACACACACAAAATTC a score=25671.0 s hg17.chr17_random 1620416 172 + 2618010 AGTGCTGAAGAACCCACTTAATCAGTGGTCGAGGATAATAAAAGTCCTCACATGGGGAGTTAGAGACAAGAAATCATGACATGGAAAATCTCCCAGTTTCTCTGGCTTGATACTTTAAGATATCTTTACACGCCTATGACACTATCGAAAAGGAATAAAAAGATAAAACCCA s panTro1.chr19 79000453 172 + 82489036 AGTGCTGAAGAACCCACTTAATCAGTGGTCGAGGATAATAAAAGTCCTCACATGGGGAGTTAGAGACAAGAAATCATGACATGGAAAATCTCCCAGTTTCTCTGGCTTGATACTTTAAGACATCTTTACACGCCTATGACACTATCGAAAAGGAATAAAAAGATAAAACCCA s canFam1.chr18 28866587 155 + 66173745 AGCG-TGGGGA--CCTCCTGGCCAAGGGTCAGAGATGACCA----------ACGGGGAG-CAGAAATAAGAAGT-GTGACATGGAGAACCTCCCAGCCTCTCTGGGGTAGCGCTTTCAGGCATCATTACACCCCTGTTGAGC--ACACAAAGGAATAAAAAAACAAAACCCg a score=1528.0 s hg17.chr17_random 1620588 16 + 2618010 ATAAAGGTAGCACGGG s panTro1.chr19 79000625 16 + 82489036 ATAAAGGTAGCACGGG a score=7280.0 s hg17.chr17_random 1620604 42 + 2618010 GTGGGGCAGAGGGGATATTTACATTAACTCGTGGCTGCTGGT s panTro1.chr19 79000641 42 + 82489036 GTGGGGCAGAGGGGATATTTACATTAACTCGTGGCTGCTGGT s canFam1.chr18 28866933 38 + 66173745 GTGGGGCAGAGGAGATAG----GACAAGTCACGGCTGGTGGT a score=21468.0 s hg17.chr17_random 1620646 242 + 2618010 GCTATCAACTGNCNTTCAACCTTTCCTGTGTTAAAGAAAAAACATTTGGCCNGGGAGTCAtggctcgcacctgtaatcccaacactgtgggaggctgaagtgggaggatcgcttgagtccaggagttcaagaccagcctgagcaacatagcaagaccccatctctattaaaaataataatcatatggccgggtgcggtggctcatgcctgtaatcctagcactttggaaggccgaggtgggT s panTro1.chr19 79000683 239 + 82489036 GCTATCAACTG--CTTCAACCTTTCCTATGTTAAAGAAAAAACATTTggcc-gggagtcatggctcgcacctgtaatcccaacactgtgggaggctgaagtgggaggatcgcttgagtccaggagttcaagaccagcctgagcaacatagcaagaccccatctctattaaaaaTAATAATCATATggccgggtgcggtggctcatgcctgtaatcctagcactttggaaggctgaggtgggt a score=2048.0 s hg17.chr17_random 1670913 46 + 2618010 GGGGCGAGCACAGGCAGTGGAAGGGAAGCAAAGCTGCCCCAGATAG s rn3.chr16 9294169 46 + 90224819 GGGGGGAGAACTGTGTGTGGAAGGGCAGGAAAGCAGCCCCGGCCAG a score=1245.0 s hg17.chr17_random 1671006 20 + 2618010 CTTGGGGAGTCGAGGGCAGA s mm5.chr11 118465704 20 + 121648857 CCTGGGGAGAGGAGAGCAGA a score=1535.0 s hg17.chr17_random 1671026 75 + 2618010 ACCTCCCTCCTTCCTTGCCTGGCTTTCTGCAGAGCCCCTGCCCTCCC--CAAGGAGCACAGACCCAGGCTACTCCCT s mm5.chr11 118465724 73 + 121648857 GCC--CCTCCCTCCACTCTCAGCTCCCCACAGGGCCTGGTGCCTCCCAACAACACATGCAGACC--AGCTGTTCCGC s rn3.chr7 26295684 56 - 143082968 ACTTACCTCCTCCCTTGCCTCATTCTCTGGCAGGCTTGTGCCTCCTC---------------------CCACTCCCT a score=1378.0 s hg17.chr17_random 1671101 27 + 2618010 GGG-----ACCTTGGGAGGGTCACCTGCAGCC s mm5.chr11 118465797 24 + 121648857 GGC-----ACCT--GGAGGGTCACCT-CAGCT s rn3.chr7 26295740 29 - 143082968 GTGCTCCAACCTCAGCAG---CACCTGGAGCC s canFam1.chr18 28677162 27 + 66173745 GGG-----ACATGGAGAGGGTGGTCTGCAGCA a score=8990.0 s hg17.chr17_random 1671128 546 + 2618010 CTTCTGGAGACCACAGGGACCAATAACATGCCACAGTGACCTCAGGCCATGCATGCCCATTGGAGGACCCTCTGCATTTTTAGAAAGTGAGCTGGA-----AACATTGGCCTATTATATAATGA-AAG------------------------TCCCACACACACACACCC----TCCCCAAGAGAAAGC----GATTTTGCTAATTTTTCTCCCGGGCGGCAGGCGCCGTTGCCAGCCTTGGTTGCTAT--GGGGCCCAGTGACTGGTTTGAGTGGTAAACTCAGGNNANTTGGNAGGAGAGGTTTCCATGGGGAGCCACAGAGTGCAGCTNATGAG-AGGCCACANGGTCTCCCCACCT------AGGGCAGCCCACACGACCA-GGTGTGAAGAGGGCCTCCTGGACCCANACCTGGCAGGTGACCCCATAACAGGCATGAGCCATCTCC--ATGACATCATAACAGGGTCTCTTAATGGGGACATCCCTGTCTGTGAACCA-GGTACA-GGCTTCCTCTGTGCACATGCATGACACATGCCATATGCATGCACTGCACACGTCTAGATAAGGTGCAGAGCTGGCACTGCCACGGG s mm5.chr11 118465821 421 + 121648857 C------------------CCAATCA----------------------------------------ACCCTCGGC---CTGAGGATGTGATCTGAACCTCAGAGATTGTTCTATTATGTAACGAGAAG------------------------CCACGAGCCTCCTCACCCCATCTCTCCAAAGGAAAGT----GATTTTGATAATTTTTCTCGAAGGTGCCAGGCGCTGTTGCCAGCCTTGGTTGCTAT--GGGGCCTGGTGACTGGCTGCAG-GGTAAACTATTGGGATT--GGAAAAAAGGTTTCGATGGGGAAGCACAGAGC------------------------TCCCCTCACCTGACATGAGGGC------CACAGCCG----GTGGGAAGGACCTCCTAGGATCAGACCTTGTAGGTGG---------------GAGCCAGCC---------------GCAGGGTGTTTCTGTGCTGGCCTCA----CTGTGAACAC-AGTACACTGCTGTCCTTGTGCACACCTGGGTCACATGGTGCATG---GGATGGCGAGTATCTGTGTAAG---------TGGGACTG--ATGGG s canFam1.chr18 28677189 450 + 66173745 ---------ATTCAAGGCACTGACAACGCACACAGGTGACCCTCCGCCAG------CAATCTGAGGGCCTTCGGTGT-TCCAGAAGGTGAGCTTGA-----AATATCAGCCTATATTATAATGACAAACAAGGATTTTCCTGAAAGTCCTTCCCACATGCCCCCACAAAC----ACCCCAAAGAAAAGCTTGTGAATTTGCTCATTTTCCTTCTGGG-GGCAGGTGCCGTTGCCAGCCATTGCCGCTATGGGGGGCCCAGGGACTGGCTTGAGGGGTCAGCTTGTCAAATT--------------------------CACAG-------CCAATGAGTAAGGCCCAGGCTCCCTTCACCT-----GGGGAT------CGCTGCCACCAGGTGGGAAGGGC--------------TCTGGCAGGTGGCATCACAACCTGCGCGGGCCACGTCCTGATGGTGTAGAAACAGGGT----------------------CTGTGGACCCTAGCCCAAGGCTGCCTTCGCTC----------CACGTGAGACATG-----------------TATATAAGATGC---------------ACGGG a score=-1890.0 s hg17.chr17_random 1671674 251 + 2618010 CATGTGTTATGGCCTCATCGAGATGGCTCAGGACTGCGGTGGCATCACCTGCCAGGTCTGGGTCCGGGAGGCCCTCCTCACACCTGGTGGCACGGGCTGCTGCAGACGGGGGGTCCTAGGGNTCTCTCACCAGCCACACCGTGCTGCTTCCCATGGAAACCTCTCCTCTGATGCTTGAGAGAGGCTGATGTGTGGCTTAGGTCCCCAGAGTAGCGTGCCTTCCTCAGAGATTTCAGGGGATGAGTGATAAA s canFam1.chr18 28677639 104 + 66173745 -----------------------------GGGTCTG------------CTGCAGGATGTGGTTAAGAGAGGC------------------CGCGGGTCACT---------------------TCTGTCTCCATCTACTC----------------------------------------------------------TAGTTCCCCAAAGCAAGGTGTCTT---------GGTCAGGTGATGAGCAGCAGA a score=100.0 s hg17.chr17_random 1671674 1 + 2618010 C s mm5.chr11 118466242 1 + 121648857 C a score=4037.0 s hg17.chr17_random 1671925 104 + 2618010 TAAAGAAGTGGGTGGAGATGAGGGCAGAGCGGGGAGGAGGGAGAGAAGGTGGAAAAACTCAAAGAACCTTGCTTCCAAATTTCTTTTACATTTTGCCTTCTTTT s rn3.chr11 8527830 104 - 87800381 TAAAAGATTAAGTGGGGATGAGGGTAGGGATGGGGCGTGGAAAAGGAGGGGCAGAAAATGGATTAAAACTATATATATATTTATTTTTCATTTTTCATTCTTTT s canFam1.chr18 28677743 100 + 66173745 ----CAGCTAGGAGCAGGGCACGGGAAGGGAGGACAGGGAGGGGAAGAATGGAAATACTCACACGGTCTCGCCTCCAAACTTTGGTCCAATTTATTCTTTTTCT a score=282.0 s hg17.chr17_random 1672029 3 + 2618010 AAG s canFam1.chr18 28677843 3 + 66173745 AAG a score=-3772.0 s hg17.chr17_random 1672032 198 + 2618010 ATGATCCCTCT-CTTGGTACCAGGTAAACTCATGTG-GATGTTGAGGACATGAGGCCACCTG--ATGTCCCGGGG---GCATGTCCCAGCTGTGCAC---CTGTGGCCAGCACTCCTGGGCCA----CC--CCCTGCTCTGCCTGCCT--GACAGAGAGGCTTACCGCCACCAGCAGCT-----CTGCTCCTG--AGCTGCCT-AACNTGCAGATGGTGGGGGG s mm5.chr11 118466379 143 + 121648857 ATTATCCCTCT-CTCTCCACCA--TCTTCCCA----------------------GCCATCTATCACTTACCAGGGACTGTGCATCCCAGCTGTGTGCTGTCTGTGGTCACCAAGCCTGTCCCATCTTCC--CCCTCCTCCCCCC----------------CCTCCCCACAGCCTCAGGC-----CTTGTCC--------------------------------- s canFam1.chr18 28677846 209 + 66173745 AAGCTCACTGTGCTTGGTGCCTGGTAAAGGCAGGTGTGATGCTGGGGACATG--GCCA-ATG--ACGCCCATGAA---GCGTGTTCCAGCTGGATA----CTGTGGCCAGCACTACCATCCCTGCTCCCTGCCCTGCCCTGCCTGCCCAGGAATGAAAGGCTTCGAAACCCCGCCAAGCAGCTTCTGCTTCTGACAGCTCCCCAAATGCGAGGGCGGGCAG--- a score=788.0 s hg17.chr17_random 1672225 5 + 2618010 GGGGG s panTro1.chr19 78546703 5 + 82489036 GGGGG s canFam1.chr18 28678050 5 + 66173745 GGCAG a score=25543.0 s hg17.chr17_random 1672230 337 + 2618010 CAGCACCTGTTC-----CGTGGGGCTTAGGGCCTCC-----GGCNTTCC--ATCCATGAGTGCCAGCGTCCC-TGGAA---CGTGTGCCCCACCTGCCTCCNTGCCAGGATCCANGGAGTGGGCACCTC-----------TCCTCCCT-----GGGATCACTATGGTCTTTGTTCAGAATCACAGTGTTTCTCTCTGCTATGGGCCTTTGAGTCCTCCCAGGAAGGGACCTTGAGCAAGGCCTCCGGGAAGTTGGCCTCCTCCTCTGCTTGC-------CCCCTCCCACCACGCCCTCTGACCCTCTGATTTCT-----------------------------------CTGTGGCNTCCTGAG--CATGGCCTGTCTCCCTGCAAGGTGCCACAGGTATGAGAACCCAGGAG s panTro1.chr19 78546708 333 + 82489036 CAGCACCTGTTC-----CGTGGGGATTAGGGCCTCG-----GGC-TCCC--ATCCATGAGTGCCAGCGTCCA-TGGAA---CGTGTGCCCCACCTGCCTCCCGGT-AGGATCCA-GGAGTGGGCACCTC-----------TCCTCCCT-----GGGATCACTATGGTCTTTGTTCAGAATCACAGAGTTTCTCTGTGCTATGGGCCTTTGAGTCCTCCCAGGAAGGGACCTTGAGCAAGGTCTCCGGGAAGTTGGCCTCCTCCTCTGCTTGC-------CCCCTCCCATCACGCCCTCTGACCCTCTGATTTCT-----------------------------------CTGTGGC-TCCTGAG--CATGGCCTGTCTCCGTACAAGATGCCACAGGTATGAGAACCCAGGAG s mm5.chr11 118466522 327 + 121648857 CAGCAGTCGTCCACACTCAATGGTATGAGATCCCCT-----GGC-TTCT-----------TGCCAGACTC---TGGCA---GCTAGG----GCCTGCTTCCC----ATGATCCA----TTTAACAACGC-----------TCCT-----------------TGTGACTGTAGTTCAGAAG-GCAGGGCTTCTCTCTAACAAGGGT------------------GGAGACTTTGAGCAGGGTCTCTGGGATGCTGTCTTCCTCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCACCTCTTCCTTCTTTCCCTTCCACCTCTTCCTCTTCTACTCCTGTCTCAGCCTCAGTTCCTTGCCTGTC-CCGCCCAGGTTCCT---GATGTGAGGACCTGGAGG s canFam1.chr18 28678055 310 + 66173745 CCATCCCTGCAC-----CCTGAATCACTCTCCCCCCCGCCAGGC-TCCGTGGTTGGCGATCATCAGGGTCCAGTGGGACTTCATGTG----GACCAGTTCCATGCCAGGCTCTG-GAAGCCGGTACATCTGTACACCGTGTTCTACTTTAACGGGGCTCATTATTGTCTTTGCTCAGAGT-TCACTGTTGCTCTCCACTAAGGTCTTGTGGATGCT------------CCTTGAACAAGGTCTC----------------------GCCTGG-------CTCTTCCCACGGAGTTCTCTGAGCTTCTGATTTCT-------------------------------------------GCTGCAG--C----CCTCTC-CCCTCAGAGGAGCCATGGGCTCGGGAACCAAGAAA a score=0.0 s hg17.chr17_random 1672567 2 + 2618010 AC a score=191.0 s hg17.chr17_random 1672567 2 + 2618010 AC s panTro1.chr19 78547041 2 + 82489036 AC a score=4173.0 s hg17.chr17_random 1672569 23 + 2618010 GGTTCTTCTCCAACACCCGAGGC- s panTro1.chr19 78547043 23 + 82489036 GGTTCTTCTCCAACACCCGAGGC- s canFam1.chr18 28678365 24 + 66173745 GATTCTTCTCCAACACAAGGGACC a score=2196.0 s hg17.chr17_random 1672592 10 + 2618010 AGACGTCATG s panTro1.chr19 78547066 10 + 82489036 AGACGTCATG s mm5.chr11 118466875 10 + 121648857 GGATGACAGA s canFam1.chr18 28678389 10 + 66173745 AGGCATCGTG a score=78108.0 s hg17.chr17_random 1672602 432 + 2618010 CCTCCTCCCNTG--------CCTCTCACTTCCCACTTTGCAGCTTTACTGTCCGCATTGTTTGGTTCGCTGAGCCCTANGAGCTGAGAGA----CTGGTTAACCATGAGGGACTGTGGAGCCAGGAAACATGACTTTGACCATTTGCCCTTCCCACCCTGAACCCC---ACACGCTAAGACCAAAGGAGGATGAAGTTTCCAAAATCAACTTCACAATAATGATAGAAATTAAT--------------------GAGTTCCACACAGATAGGCAGATAGACAGGGGATGACGCATNGAATAAATGGATACCTGCatagatggata-a----tagatagatgagtag---atggataggcagatggatatagagacatacagatagacaggcaggtagacaggtgacagatgatggatggatgcatagacagatgatggatggatggacaggtaggtagacagatacatagatgga s panTro1.chr19 78547076 434 + 82489036 CCTCCTCCC-TG--------CCTCTCACTTCCCACTTTTCAGCTTTACTGCCCGCATTGTTTTGTTCGCTGAGCCCTAGGAGCTGAGAGAGGCTCTGGTTAACCATGAAGGACTGTGGAGCCAGGAAACATGACTTTGACCATTTGCCCTTCCTACCCTGAACCCC---ACACGCTAAGACCAAAGGAGGATGAAGTTTCCAAAATCAACTTCACAATAATGATAGAAATTAAT--------------------GAGTTCCACATAGATAGGCAGATAGACAGGGGATGACGCAT-GAATAAATGGATACCTGCatagatggata-a----tagatagatgagtag---atggataggcagatggatatagagacatacagacagacaggcaggtagtcaggtgatagatgatggatggatgcatagacagatgatggatggatggacaggtaggtagacagatacatagatgga s mm5.chr11 118466885 408 + 121648857 CCTGTTCCC-TG--------GCTTTCAGTTCCCG---TGCCGCCATCCCACCTTCGCTGTCTGTTTGGCTGAGTCTGGAGAGCTGAAGGAGGCCCCAGTGAAGCATGAGAGACTCCAGCACAAGGAAGCATGACCCAGATC-CTTGGCCTCCCCAGCCTGAGCCCCCATAATAGCTAAGACGAAGAGGGGGTAACATTTTAAATATAAGCTCTACAATTATGATACAAATCAAT--------------------GGCTTCCAGGCAGACAGATAGAAGGATAGA------------TGACAGATGCATGTCTGCATTCACGGGTA-AATGCCGGATGGATGAGAAG---ATGG-CAGGGAGACAGAGA-ATAGGTATGTGGTTAGATGCAGGGGTAAGCAAAGG--GGATGATGGATAAATAAATAGATGCACCAT-----CATGGA---------AAACAGACACATAGCTAAA s canFam1.chr18 28679076 419 + 66173745 CCTTCTGCC-TGGCTTCCCTCCTTCCTCTTCTCCTTACGGAGCTTTCCTGCC-----TCATAGGTTTGCTGAGTCCTAGGAGCTGCCATAGGCCC-----------------CCACTAAGCCAGGAAACA--ACCATGATAATTTGTCCTTACCACCCCAA--------------TAAGATCAAAAGAGGATAAAGTTTTCAAAATAAACTTTGCAATAATAATAACAAGCAATGAAAATAAACAATGACTTCAGAGTGAAAGAGAGGTAGGtggatggatgggtgggta------gggtggatggatgcatgggtgaatggatgta----tcgatagatgagtggggaatgggtggggggatggttggatgggtgtgtgggtggatgggtgggtggatggatc------gatagatgagtggg-ggatgggtgggggatggatggatgggtgtgtgggtggataggtaggtgga a score=31145.0 s hg17.chr17_random 1673034 249 + 2618010 tgattgaacagacagacaatagatcaacaaatgaatggatag-------acgggtacacacatggatgatagatagatgcatacacagacataggtagatagatcggt-agcagataggcaggcaggcaggcagacagNACAGGAggatggatgaatga--atgnaatggatggatggatggatagatagatagcagataggcaggcagatnagacagaaggatggatggatga----atggatggatggatagatagatAGG s panTro1.chr19 78547510 242 + 82489036 tGATTGAACAGACAGACAATAGATCAACAAATGAATGGATAG-------ACAGGTACACACATGGATGAtagatagatacatacacagacataggtagatagatcgat-agcagataggcaggcaggcagacag-----acaggaggatggatgaatg-------aatggatggatggatggatagatagatagcagataggcaggcagat-agacagaaggatggatggatgaatggatggatggatggatagatagatagG s mm5.chr11 118467293 244 + 121648857 TGGACAGACAGAAATATAATAGATACATGGATGGATCAGTAATATCTATATACAAATATAGATGGATGCTAGACATATATGTGCACATGTAAAGATA-ATAAATGTACAAGTGGATGGATATACAGTCAGACAG-----TCA-GATAATGCATAAATGCATATATAATTGATGGGTAGGTAGTTGGGTGGAT---GGATGGGTGGAGAGAT-GGGTGAGAGGGTGGATGG--------ATGGATGGATGGGTAGATAGATAGG a score=14132.0 s hg17.chr17_random 1673283 798 + 2618010 AGACAGGCAGACAGATAGGAGGATAGNACGAATGGATGCATAGNATAGATAGCagataggcaggcagatagacaggaggatggatggatggatagatagatagataggaagatagatggcagatagacaggaagacaggcaggaggatggatggatggatggatggatagatagacagcagataggcaggcagatagacaggaggatggatagatagataggaagatagaTGGCAGATAGGCAGGCAGATAGAGACGGGAggatggatggatggatggatggatggatggatggatggatggatagcagataggcaggcaggcagacaggaggatggatggatggatagatagatagactgattgattgactgatcgactgacagactgacagatagatagatagatggatacagatagataTGGATATAGCTCCTCTATAGAGGAGAAAATGTAGGGAAAAAAACCCCTATATTTTCCCCTACACCTTCTCCTTTATGGGTCA-TTCAGAAAGGTCGGTCCAGGTCTTGACATCNAGTTGGCAGCAGAGGAGCCAAGGACTCAAGC-CAGATGAATTCTCACTGGTCACGAGGTGTCTGACATGTATGCTGGGCGGGCTCAAGTCCAGGTCTGTGCCCATCTCCCTGCAGCAGCACTGGGGCCCCTTGGCCGCCCATGCAGTCCTGGGAATCCAGGCACCAGGGACCAGACCTGACCTGAAACAGGGATGTGTGTGGAGA---GGACCCCACTCCACGTCAGGGCGCCTGGTCCTGCCTAACGCTCCAGCCTGGACAACTGC s mm5.chr11 118467537 632 + 121648857 --------------------------------TGGATGGAT-------------GATGGGTGGATGGTTGGATAGGTGGATGGGTGAATGGATGGATGGATGGAT---------------GGATGGATGGGTGGATGGGTAAGAGGATGGATGGGTAGATGGATGGAT-GATGGGTGATGGATGGTTGGATAGGTGGATGGGTGGATAGGTAGATGGATGGATGGATGGATG---AATGGATGGGCAGAT--GGGTGGAAGGGTAAATGGATAGATTGATGGGTGGATGAATGGGTGGGTGGAT---GGGTAGGAAAGTGAGTAGATGTGTAGATGTATGGAT-GATAGCTTAATGAACAGA---------TGAGTGATTGGAAG--------------AAGCAGAGGCAAAAAGATAGAGATGGA-GTAGGTCCC---------------------ACAAAACACTCCT---TTTCCTCATG-----TCTACTTTATAGCTCACTTCAGAAGAAGTGGTCTGGAATCTAGGGTAGAGATGG--ATAGGTGGACCAAAGGTTCAAGCTCAGATTAACCTTCA-TGGGCACAAGGCACCTGACACTTGTACTAGGTTGGCCCTAGTCCAGGATGGTGCCCCTCCTTTT----------------------------TGTGCAGCC---------------CCAGGGACAATCTCTAACCTGAGG-GCTGATGTACCTGGGAATAGTGTTCCCTCACCATGT-AAGTCACCTCGACCTGCCTAGTGATCTGACCAGGACTGCTGC a score=382.0 s hg17.chr17_random 1673283 4 + 2618010 AGAC s panTro1.chr19 78547752 4 + 82489036 AGAC a score=-261.0 s hg17.chr17_random 1674357 28 + 2618010 GAGGGCAGCTTGCTCA----------------------------------------CGTGCAGTCAGA s rn3.chr2 126992425 68 + 258222147 GGGGGCAGTATGCACAAAGAGAAGTGTGCACAAAGGGAAGTGTGCACAAGGATCAGTGTGCAGAAAGG a score=10839.0 s hg17.chr17_random 1674385 143 + 2618010 AGAACACGCATGAAGGAGAGCGCTCATGAGGGAGAGCTCGCATGGG--GGAGCACGT-----GCACGGAGGAGAGGGTGCACAGGGGAGAACGTG--CACAAGGGAGAACGTGCATGATGGAGAACGTGCATGAGAGAGAGCACGCATGGAG s mm5.chr1 32331974 151 - 195203927 AGAGCACACAGGAGAGGGAGCACACAAGAGAGAGAGCACACAGGAGAGGGAGCACATAGAGAGCACACAGGAGAGGGAGCACAGAGGAGAGAGAGCACACAGGAGAGAGCACACAGGAGAGAGAGCACACGGGAGAGGGAGCACACA-GGAG s rn3.chr2 126992493 143 + 258222147 GAAGTGTGCACAAAGGAAAGTGTGCACAAGGGGAAGTGTGCACAAG--GATCAGTGT-----GCACAAAGGGAAGTGTGCACAAAGGGAAGTGTA--CACAAAGGGAAGTGTGCACAAGGAGCAATGTGCATAAGGAACAATGTGTACAAAG a score=91.0 s hg17.chr17_random 1674528 1 + 2618010 A s mm5.chr1 32332125 1 - 195203927 A a score=11862.0 s hg17.chr17_random 1674747 148 + 2618010 GACCCAAAAGGGCCCTGCGAATGTTGGAGAATGAATAGTTGTGTGCTTCAATATCACCTGAACTCAGGAGATCACTACTGGAGACACCACCGCAGCCCCAGTGGCCCAC--GTGTGTACCTGGGACATCATCCTGGCCCCGGTGGCCAAA s panTro1.chr19 78549218 148 + 82489036 GACCCAAAAGGGCCCTGCGAATGTTGGATAA--GACATTTGTGTGCTTCAATATCACCTGAACTCAGGAGATCACTCCTGGAGACACCACCGCAGCCCCAGTGGCCCACATGTGTGTACCTGGGACATCATCCTGGCCCCAGTGCCCAAA a score=124017.0 s hg17.chr17_random 1674895 936 + 2618010 ATGCCGTGTGTCCACTCTGCTGNGACAGAGGGGAAAGAGTAAAGACTGTCAACAGCAAATAAGACAGGCTGGCGGGTGGGCTAGGGCTGGACGGAGGGCTGTCTTCACTCAACAGCTCCCCCC---GAGGCTACTGGCTCCCCATGTGAAATGTCGCCACATTATAAGCAGAGTCTCATAAAATTTCACAGGAAGGTGGCATTAAAATTCTTCTACTCCAAACCACCCCTCAGCACACACATGCATCTAAGGTTAGNAATCCCTTCCCCAACATCCTACCACGTGCTTCTCAAGCTAGGGAACCCCCCTCAGCCCCCAAGGGTGT-----GCAGAGGTGAGATGAGGGTGGCTGGCCACACAGCCCNACGCATGTGCCTCCTCTCAAAGTATCCGTTCTAGCCAAA-GTGTC-TGGGGGNAACTATTACTGTCAGGTTATAGCCAGCACAAGCATATTGTGGATTCAATGTAAGATGTGCTTGAAGTTTTAAGAGAACAAATAAGACTTNCAAAGAAATGTCATCCTTTCTCTGGACCCCTTCTGGCAACACACGTCCAGTCCCTCAGGGGTACAGGTTTAATATT-TCCTCTCTTCTGGAGTCTTCCG-GGGAAAATGTATACCTCCAGGGAAATGCTGTGTGCCTCTCTGTCATCCAAGACAGGCCACTTAATCTCCCTTTGCCTGAGCACAGCCCACTGCACGCA-----TGTTCTAGCTCTGTGATGCAC---------CACCACGAAAAAAATAACAGCAGAACCAGCCCTTCCTTTCTATTCACTGAAGGAGAAAA----AACAGAATTAACTGCTTCATAGACAGTCAAAATAAGCTTTCTGCTGGCCTCAGTGACAATGCTTGACATCCATANATGCAGAATGGAGGTGAGTCCTGGGTCCCCAGCACCCCTCCTG--------CTGGAAGAGG-----CCAGGACACACGAAGGGTCTCTCATGGGAAGC s panTro1.chr19 78549366 935 + 82489036 ATGCCATGTGTCCACTCTGCTG-GACAGAGGGGAAAGAGTAAAGACTGTCAACAGCAAATAAGACAGGCTGGTGGGTGGGCTAGGGCTGGAGGGAGGGCTGTCTTCACTCAACAGCTCCCCCC--CGAGGCTACTGGCTCCCCGTGTGAAATGTCGCCACATTATAAGCAGAGTCTCATAAAATTTCACAGGAAGGTGGCATTAAAATTCTTCTACTCCAAACCACCCCTCAGCACACACATGCATCTAAGGTTAG-AATCCCTTCCCCAACATCCTACCACATGCTTCTCAAGCTAGGGAAACCCCCTCAGCCCCCAAGGGTGT-----GCAGAGGTGAGATGAGGGTGGCTGGCCACACAGCCC-ACGCATGTGCCTCCTCTCACAGTATCCGTTCTAGCCAAA-GTGTC-TGGGGG-AACTATTACTGTCAGGTTACAGCCAGCACAAGCATATTGTGGATTCAATGTAAGATGTGCTTGAAGTTTTAAGAGAACAAATAAGACTT-CAAAGAAATGTCATCCTTTCTCTGGACCCCTTCTGGCAACACACGCCCAGTCCCTCAGGGGTACAGGTTTAATATT-TCCTCTCTTCTGGAGTCTTCCG-GGGAAAATGTATACCTCCAGGGAAATGCTGTGTGCCTCTCTGTCATCCAAGACAGGCCACTTAATCTCCCTCTGCCTGAGCACAGCCCACTGCACGCA-----TGTTCTAGCTCTGTGATGCAC---------CACCACGAAAAAAATAACAGCAGAACCAGCCCTTCCTTTCTATTCACTGAAGGAGAAAAACTCAACAGAATTAACTGCTTCATAGACAGTCAAAATAAGCTTTCTGCTGGCCTCAGTGACAATGCTTGACATCCATA-ATGCAGAATGGAGGTGAGTCCTGGGTCCCCAGCACCCCTCCTG--------CTGGAAGAGG-----CCAGGACACACGAAGGGTCTCTCATGGGAACC s mm5.chr11 118469787 904 + 121648857 ATGCTGTAGCCTTGCCCTACTC-GGTACAGGGTGAAGAT--GAGAATCTTACCAGTAGATACCACA-GCTGGTAGGTGAGGTAGGCTTGGAGTGC---CTGTGTTCACATGACTGCTATTCTCTATGGGACTTC----------TTTAAAATGTCACAGTATCGTA--TATAGCCTGGTAAAATGTCATGTGGAGATATTATTTACATTCTTCTAGTCTAGGCCACCCTTCAACACACA---ACTCCCA----TAGCAA--CTCTCCCATGCATCCCTACGAGGGGTTCTCAAACTGGGGTCCCATCCCC--TCCCCATCCTTGTCCCTCGAGGACATAGGATGAGGA-GGCAGATCACTCATAGGTTAACAATTGCATCTGTCTAAAGCATTGCCTTTAGTTGAACGTGTTGTGAGAG-GA----TGTTGTAACATTACAGCCAGCAAAGGTACACAGTGGGTTCCATGTAAGATGTGCATGTGTTTTTAAGATAACAAATACGATTT-CAGGGAAATGCCATACTTCCTTTGACTTGCTTCTGGAAGCAGATGCCCGGTTCCCCGGGGGTAGGGTTTTAATATTCCCCCCTCTTTGGGAGCCCTCAGAGGGAAAATGCACACCTCCAGCATGGTGCCACATGCCTCTCCATCATCCACGACAAGCCATTTAATCTCCTCTCCCCTGTGCACAGCCCATCACGTGCAGCGTGTGTTCCAGCTCTGAGAGACACCTATGTGTTCACCAC----AAAATAACATCATC-----CTCTTCCGTTATACACCATAAAGGGGGGAA----ACCAGGCAGAACTG--------------------AGATCTCAGCCTGTGCCAGCAAAAGTCCTAGGCATCGATGCAAACAAAGTGGAGA-GAGCCTCGAGTCCTAGGATTCCCCCATGATACATACCAGGAAGAAGTGCCTCCTGGGAAC----AGGGTCTCCCCGGGGAAGC a score=43188.0 s hg17.chr17_random 1675831 492 + 2618010 AGCCATCGTGGCTCTCAGCTCATGGAAAGCGGGGTACGTGACCAGCACTGGCCAGGGTGCGACGCTTGGGGTATTCGCAGGGAAATGAGGGCAAAGCATTTTGCAAAGAGCNGTGCAGGGCTGGGCAAAATACTAAATAATTCAAAAATCATGATGACCTTGCCTTGGGAACTTTTGGAGCAACAGAATGGTTTAGAATAATGACCCATCCAATGACATTCTGGCTCACAGACAAGAGACAATATTCAAACGCCACCTCTGGTCANCCCCTGGCCTGAGGGACATTTGTTTTGGTGGCTGAGGCAGCCGCCAGTTACCCAGTACTGTGGGTACAGGCATGAGCTTTCTCAGCTACAAAGAGCACGACATAAACAAGGNAAGGCGCACACACACCTGTCACCTCTCCGGGGACTGCAGTGTTTAAAAGACAGTCATCACCCAAAGTGNCTTTTTATAACAAGAAAGGACTCTGAANCGTTGTCAGGTGAGTAG s panTro1.chr19 78550301 487 + 82489036 AGCCATCGTGGCTCTCAGCTCATGGAAAGCGGGGTACGTGACCAGCACTTGTCAGGGTGCGACACTTGGGGTATTCGCCGGGAAATGAGGGCAAAGCATTTTGCAAAGAGC-GTGCAGGGCTGGGCAAAATACTAAATAATTCAAAAATCATGATGACCTTGCCTTGGGAACTTTTGGAGCAACAGAATGGTTTAGAATAATGATCCATCCAATGACATTCTGGCTCACAGACAAGAGACAATATTCAAACGCCACCTCTGGTCA-CCCCTGGCCTGAGGGACATTTGTTTTGGTGGCTGAGGCAGCCGCCAGTTACCCAGTACTGTGGGTACAGGCGTGAGCTTTCTCAGCTACAAAGAGCACGACATAAACAAGG-AAGGCGCACACACACCTGTCACCTCTCCGTGGACTGCAGTGTTTAAAAGACAGTCATCACCCAAAGTG-CTTTTTATAACAAGAAAGGACTCTGAA-CGTTGTCAGGTGAGTAG a score=32844.0 s hg17.chr17_random 1676377 396 + 2618010 GCAGGTTAGCTATCCCAGCCCTATGCATCACTCCTGCATCACACCTAGNCGCCCCGTGTGTGACCCGGGATCCCACCNGTTCTCCAGGGTCGAGGGAGAACACTTCAAGAGAGGCGACTAAANTCTCCACCAAGCACATTATATCAAATACGCTTCAGGAAAACCCTTTATGGAAACCTACTATGTGCAGCACTGTGGGAGAAACAAGTTGCAGCCTGTGCCCTTAAGGAACTCCAGAAAGAAAAGGGGACAGGTGACAAGAGACATGACCAAAGAGGCAGCTCCATGCACAGATGACGACGACNCGCCCAGCTGCCCTCTGCAGGTGTGCAGGACCAGAGGGNCAGGAAGGTGGGNGTGGGGGTGGGCTCTGGGTCATGCCCACTTGGCCTCCAT s panTro1.chr19 78550888 390 + 82489036 GCAGGTTAGCTATCCCAGCCCTATGCATGACTCCTGCATCACTCTTAG-CGCCCCGTGTGTGACCTGGGATCCCACC-GTTCTCCAGGGTCAAGGAAGAACACTTCAAGAGAGAAGACTGAA-TCTCCACCAAGCACATTATATCAAATACGCCTCAGGAAAACCCGTTATGGAAACCTACTATGTGCAGCACTGTGGGAGAAACAAGTTGCAGCCTGTGCCCTTAAGGAACTCCAGAAAGAAAAGGGGACAGGTGACAAGAGACATGACCAAAGAGGCAGCTCCATGCACAGATGATGACGAC-CGCCCAGCTGCCCTCTGCAGATGTGCAGGACCAGAGGG-CAGGAAGGTGGG-GTGGGGGTGGGCTCTGGGTCATGCCCACTTGGCCTCCAT a score=87957.0 s hg17.chr17_random 1676773 756 + 2618010 CCCAGAGAGCAGCTCCCCCAAACCTGGAATGATGAGTGTGCCTGACGGGGCCCATCTGAGATA-----GACC---ACAGTGGTCATACTAGCTGGTGGCAGAGGGTTGGGAGTGGTAGTCCTTAAA---------------------------------------------------------------ttattttgaaataatttaagaatcacaggaagttgcaaaaatagtacagaaaattcccgtgcacccttctattatggactgaatcatgccctctcaaaattcatacattgaag-tcctaacccctagta---cgttag-atgtgaccgcantttggagataggacccnttaccaggccat-----------------atgggtggg--cctcatccactc-tgaccagtgtccttnctaagagaagaagattaggacacagacatgcacagatcaaggggcggccatgtgnagngacataagng----------agaagatgaccatctacaagccaaagaga-agccttcaaggaaaccaatgctgcc----aacagcttgatcttagacttctggcctcttgaattttgagaaaattaacctctgttgtgtgagcccccaggctg---aggggcttcaccatggcagcccaagc-cgaccaCACACCTCNCCACATCT--CATGACCACCCTCCATTCTCAAGCGAGGACACTGCCCTGGGTCTGTTGGTCAGTGGCAGAGCTTATTCAAACGTGACAAGTTCTGTGATCTGACCNTGTGTGGCCTNCTATACCGGCACTTCTCAAACCATCTGTGGTGAAGGATTCATTGGNTTTATTTCCAATTCATTCTGGACCTACAt s panTro1.chr19 78551278 743 + 82489036 CCCAGAGAGCAGCTCCCCCAAACCTGGAATGATGAGTGTGCCTGACGGGACCCATCTGAGATA-----AACC---GCAGTGGTCGTACTAGCTGGTGGCAGAGGGTTGGGAGTGGTAGTCCTTAAA---------------------------------------------------------------ttattttgaaataatttaagaatcacaagaagttgcaaaaatagtacagaaaattcccgtgcacccttctattatggactgaattgtgccctctcaaaattcatacattgaag-tcctaacccctagta---cgttag-atgtgaccgca-tttggagataggaccc-ttaccaggccat-----------------acgggtggg--cctcatccactc-tgaccagtgtcctt-ctaagaggagaagattaggacacagacatgcacagatcaaggggcggccatgtga--ggacataag-g----------agaagacgaccatctacaagccaaagaga-agccttcaaggaaaccaatgctgcc----aacagcttgatcttagacttctggcct---gaattttgagaaaattaacctctgttgtgtgagcccccaggctg---aggggcttcaccatggcagcccaagc-TGACCACACACCTC-CCACATCT--CATGACCACCCTCCATTCTCAAGCGAGGACACTGCCCTGGGTCTGTTGGTCAGTGGCAGAGCTTATTCAAACGTGACAAGTTCTGTGATCTGACC-TGTGTGGCCT-CTATACCGGCActtctcaaaccatctgtggtgaaggactcattg-ttttatttccaattcatTCTGGACCTACAt s canFam1.chr18 28680402 809 + 66173745 CCCAGAGAGTCGCTGCCCCAAACCTGGGAC-CCGTGCAGCTCTGCAGGGACCCGGCAGAGAAAACGAGGACCTTTTTAGGGGCCATGC-------TGGGGGGGGGAGGGGAGT-GTCATCCTTaaaaaaaaaaaaaaaaaaaaaaTTATTTTACTTTTAAATAATTTAAGACTCACAAGAAGTGGTAttttatttttaaataatttaagactcacaagaagtggtgaaagcagtacagaaaatt--------cccTTCtgttatgggccgaattgtgtgtcctcaaaatttgtatgttaaagttcttaacccctagtagttcctcagaatgtgactata-tccggagacggggtctttaaagaagtcattacattaaaatgaggtcacgggctggtccctaatccatccatggctggtgttctt-gt-ggaagagggggtgaggacacgcacacgcccag----aggggtgaccctgtga--gtacacgggggggcggggggcagaaggtggccgacggcaagcctgggacagggcctcggaagggaccacccccactgtgggccaccttgatctgggccacctagcctgcagaactttgagacggt--acacctgtt--------caccagcccgtctgtggtcccagtcacggcagtctgagcaCAGGAGTGCCCCTC-GCACAGCCGACGTCGCCACGGCACCTCCTCAAAGCAGCAGCCCACTCTGGGCGTGCCAGCCCACCACACAGCTTATTCGAGCTTCCCTGGTTTTGAGATGGGACC-TGTGTGCACT-CT----------CTCTCTTGTCAGC---------GGGCTCA----TTTCATTCCCAAATCA--CTGGAAATACAT a score=10764.0 s hg17.chr17_random 1677529 124 + 2618010 ttttgtttctttgttttgttttttgagacangggtctcactatgctgcccagctgatctcaaacaccagggctcaaccaatcctcnccacctcagcctcctgagtagttgaagtgacaagcCCT s panTro1.chr19 78552021 122 + 82489036 ttttgtttctttgttttgttttttgagaca-gggtctcactatgctgcccagctgatctcaaacaccagggctcaaccaatcctc-ccacctcagcctcctgagtagttgaagtgacaagcCCT a score=13159.0 s hg17.chr17_random 1677653 153 + 2618010 TACTTTTGGTTtttagaaanancctataaaaatagnaatcactagaaaaatggaataaagaaggcatacaaaacacaaagcccaggttcttaacgattagactcatcagacctaaaacgactccnttcaaatgacta--------aaagattctnaaatgc s panTro1.chr19 78552143 148 + 82489036 TACTTTTGGTttttagaaaa--cctataaaaatag-aatcactagaaaaatggaataaagaaggcatacaaaacacaaagcccaggttcttaacgattagactcatcagacctaaaatgactcc-ttcaaatgacta--------aaagattct-aaatgc s canFam1.chr18 28681223 148 + 66173745 CAATATATATATATATATATTCTCTACAAAAAAGG-GATTACTGGAAAAATGGAATAAAAAAG--AGACAACTTTCTTATTCCAACTGCTC-ATTAGTAGATCCATGAGATATGAAGTTACCCT-TACAGATGACTCTCCCCGCTTACCACTC-------- a score=22313.0 s hg17.chr17_random 1677806 168 + 2618010 ttaatttcagcttctgtactcag-ttgcagggatcagaagcagcacctcacgggctggcacccatccacagacctcactttgagtagcTGAGATATGGGTCATGTGAGACGTGTCCTCAGC-------CTGT---TGCTAGGGNAGCTGCTGTGGG----TTTGAATTctgtatggccctggg s panTro1.chr19 78552291 166 + 82489036 ttaatttcagcttctgtactcag-tggcagggatcaga-gcagcacctcatgggctggcacccatccacagacctcactttgtgtagcTGAGATATGGGTCATGTGAGACGTGTCCTCAGC-------CTGT---TGCTAGGG-AGCTGCTGTGGG----TTTGAATTCTGTATGGCCCTGGG s mm5.chr11 118474281 164 + 121648857 TTGTTCTCAAGTGCAGTATTCAA--GCCCGGGGCCAGTAGCCATGGCTCCCGGG-----GCCTATGTGCAGACCTCACTTTGAGTGGTGTTGACCTGAGCCATCCAGCACGCACGCTCTGA-------GTGTCAGTGTTGGAG-GACTAGGGTGGG----GCTTGATTCTGACTGTTCCAGGG s canFam1.chr18 28681371 177 + 66173745 CCCACCGCCGTGTCCACACTCATCTTCTGGGGACCAGTGGGCCCAGCTCAGGGGTGG--GCTCGTCCACACGCGTCACTTTGAGTAGCTCCACAGTGGATCGTTGGAGCTGCATGAGCCGAGCCAGTGCCGT---CCCCAGAG-AGCCACTGCGGGACGATTCCAACTCTCGATGGCCCCATG a score=651.0 s hg17.chr17_random 1677974 5 + 2618010 ttggt s panTro1.chr19 78552457 5 + 82489036 TTGGT s canFam1.chr18 28681548 5 + 66173745 CTAAT a score=75399.0 s hg17.chr17_random 1677979 436 + 2618010 catttatctgcagctcagcttcctcaCAGAGCCC-GAGT-TGGAACTGTTGTGAGGATTC---ACGATGATTCATATATATNTTTGGNGACGAGNA-ACCTCNGGGTAANGATAACCTGCTCACATGTGTCATTCAGGGACGTCAGCCTGATGGATTTCCAGGCCTTGCATACTGTTC-----TGGACACTCCAGGCACACAGATGCCTCCCACAAGAAGTTGTGTTACGAGTGTATT----ATTTGATCTTTGTTGA-------ACTTGGGTTTNATCT-TTGCTTGCTTTCAGGCCCTCCCNATAATGTTGACATCCTGATGAACCCCCGCTGGTGACGGCAGGTGGCCACACCCTGCAAGCTCCCTGTAATTCCAGCCATTACTCAGNCAA-----TGCTCAGCAATGCAAGGTCACTCAGAAACACCATCTGTCCAAGC--------------------------TCCATCTCCCCTCCCACCCCA s panTro1.chr19 78552462 428 + 82489036 CATTTATCTGCAGCTCAGCTTCCTCACAGAGCCC-GAGT-TGGAACTGTTGTGAGGATTC---ACAATGATTCATATATATTTT--GGGACGAGGA--CCTC-GGGTAA-GATAACCTGCTCACACGTGTCATTCAGGGACGTCAGCCTGATGGATTTCCAGGCCTTGCACACTGTTC-----TGGACACTCCAGGCACACAGATGCCTCCCACATGAAGTTGTGTTAAGAGTGTATT----ATTTGATCTTTGTTGA-------ACTTGGGTTT-ATCT-TTGCTTGCTTTCAGACCCTCCC-ATAATGTTGACATCCTGATGAACCCCCGCTGGTGACGGCAGGTGGCCACACCCTGCCAGCTCCCTGTAATTCCAGCCATTACTCAG-CAA-----CGCTCAGCAATGCAAGGTCACTCAGAAACACCATCTGTCCAAGC--------------------------TCCGTCTCCCCTCCCACCCCA s mm5.chr11 118474873 427 + 121648857 CATTGTCCCGTGGTTCTGTTTTCTCA---------GAGT-CGCGATGTCTGACAAG-------GCAATGTCACCCACAACCCTT--GGAATGATGAAAATTCCAGACAA-GATGGGCT--------GTACCTCACCAGCAGGTCACCTTGAGGTACCCCCAAGTCTTCTGCACTGTTCGGGGGGGGGGGCTCTGGG--CCCAGGAGCTCCCCTCGTGG---CATGTCAGGAGCATCCT----ATTTGATCTTTGTTGA-------ACTTGAGTTC-AGCT-TTGATTGCTCTCCCACCCTGCC-AGGGTGCTTACATCATAATTGGTGCCCAGTGGTAACTGCAGGAGTCCACATCCTGCAAGCTTCCT---------GCCAAAGCTCAG-CAG-----CAGCCAGTGGTGTAAGGTCAAGGATGGA-GCTGTCTGTCCCAGCAGAGGACAGGGTGACTGTCCCTCTTTTTTGTTTCCTCTTCTATCACA s canFam1.chr18 28681553 438 + 66173745 CCTTCATCTGCGGCTCTGTTTCCTCGTGGGacccagcgcacagggttgtcgtgaggattcccagggatgacacatgtcaaCCTG--ACAACGGCGA--CCTC--AGAGA-GACAGCCTGAGTGTACGTGTCGCTGCAGGACGTCCACCTGACCTGTCTCCATGCCTTCCAGACCACAA----TAGGGAACCCCAGGCCCATGGGTGCCCCCCGC-------CATGTGAAACGGGTTTCTGTGAGCTGATCATTGTTGATTTGGGTGCTTGGATTT-ATCTCCTGATGCCTTCTAGGCCCTTCC-ATAATGCTGACATCCTAACTAACCCTCACTGGTCGTGGCGGGCAGCCACACCCCACGAGCCTCCTGTCACTCCAGTCGTTACTCAG-CAACACTCCACTCAGTGACACAAGGTCACTCA-AAACACCA----CCCAAGC--------------------------TCCACCTTCTCTCCCACCCCA a score=5993.0 s hg17.chr17_random 1678415 37 + 2618010 AAGGAAAAAAGAAAAATTATTCTGTTCCGCCTCCATT s panTro1.chr19 78552890 37 + 82489036 AAGGAAAAAAGAAAAATTATTCTGTTCCGCCTCCATT s canFam1.chr18 28681991 37 + 66173745 AATAAGCAGAGAAAAATGACCCTGGCCTGTTTTCACT a score=0.0 s hg17.chr17_random 1678452 31 + 2618010 TTTCTCCTCCTCCTAAAAGcacacacacaca a score=664.0 s hg17.chr17_random 1678452 7 + 2618010 TTTCTCC s panTro1.chr19 78552927 7 + 82489036 TTTCTCC a score=4667.0 s hg17.chr17_random 1678459 24 + 2618010 TCCTCCTAAAAGcacacacacaca s panTro1.chr19 78552934 24 + 82489036 TCCTCCTAAAAGcacacacacaca s mm5.chr11 118475415 24 + 121648857 TCATCACACACACACACACACACA a score=145972.0 s hg17.chr17_random 1678483 1314 + 2618010 ctcacacacacacacac------------------------------------gcaGAACTAAAGTTAGGCTTGCCTTGACCTCTACTTNCTAAATTAATTTTCCTTCCTCAGGCATTTGCT-GACGCTCCTTTTCTGTTCTTTCCCCCACAGAACACAGATGTCTTTGAAAGCACCAATCCTGCAAACACTTTGTATATCCT-TGCANAATCGGGTAAAAGAATAATTTTCTCCAAATCTATACAAATCCTCAC-TCGTCCATTCACCTTTGCCATGGAATTCACNCGGCAACCCCCTCTGAGGAATGCACGTGTCAATGCAG-AAAAAAAAAAAAAATGAAGAAATTCCGGAATCACATCGAGGGGCCTCAGCCCCAGGTNCCCATCTAAGAATGAGGCCAGCAAGAACCAC-TTAGGCTCTTGGATGCCGTTGACTCAC-GTCCCTGGTGGCCCNTTGATCA--------TTTTGAATCTAAAACATATGGATTTATACAGATTCATGTGGAACCTTCTCATGTTTCTCCATCCAGAATATCTCTGTGACGATGCAGTCACAAGTTC--TGCAGTTACTT-CTGTGTGACAGGGTCTGTTTGGATC------ATGCTTGCACANGGTGTCGATATACCATCCTGGAACACGAGGACTAACCCTCCTTTCCCT----CAACGGATGGTGACAATCATTTATTGGCTCTCACTGAAGACACAGCCCTTATCGCTGGGGGACTCAGCATCTCAGAGGAGGATGGGCTGTGCATGCAGAGGGAACACANGGNGAGCAAAGTCTGTGCAGAAGGTCACCTCACTCACATTTGACTTTTGTATCCGTGAACTTCAGTGCAGCGTGTACCCAGGATCTATTTTCTGCTTCCATTCCCCCTCATTCCCT-----GGTGCCATTAGTTCCTTTTCCTAAAGTCCTCATGGGTC---------TCCCCCAGCCCTGGA-CTCTTACCTCCACCATCACCACCTGACTCAGTCCCTGCTGCCCGCCCACTGGCCTGCCTCACCACCAGAGCCCCACGNCATCACTAACT-TCAGCACCCG--TGCCCACCCAAAAAT--GTGTCCACATCCCTCTCTCCCCAGAGGTCTCTTTTTCCCTCTGTTTCTTGGGCCTGACTCCTACCTTTCCTTCCAATTCATTCCTTCCACACCTCAAGAGCCCCCTGGAGAGACCTCACAGGCTCCCCTCTCCTGGCTCAGCTCTACAACGCCTCCCNTCTCCCACAGGCAGAGCAAGANCTCCAGTTTCTCTCTCCNTGTGACAAAAGNTGTGCGCCCAAAACTTGCAGCACGAACTGTTTATTTTTAGGTTTAGATTTGGGGTCTGG-CTTTTAATTCTTAGTTTGTTCTCAAGTCCGATCTCAG s panTro1.chr19 78552958 1300 + 82489036 ctcacacacacacac--------------------------------------gcaGAACTAAAGTTAGGCTTGCCTTGACCTCTACTT-CTAAATTAATTTTCCTTCCTCAGGCATTTGCT-GACGCTCCTTTTCTGTTCTTTCCCCCACAGAACACAGATGTCTTTGAAAGCACCAATCCTGCAAACACTTTGTATATCCT-TGC-GAATCGGGTAAAAGAATAATTTTCTCCCAATCCATACAAATCCTCAC-TCGTCCATTCACCTTTGCCGTGGAATTCAC-CGGCAACCCCCTCTGAGGAATGCACGTGTCAACGCAGGAAAAAAAAAAAAAATGAAGAAATTCTGGAATCACATCGAGGGGCCTCAGCCCCAGGT-CCCATCTAAGAATGAGGCCAGCAAGAACCAC-TTAGGCTCTTGGATGCCGTTGACTCAC-GTCCCTGGTGGCCC-TTGATCA--------TTTTGAATCTAAAACATATGGATTTATACAGATTCATGTGGAACCTTCTCATGTTTCTCCATCCAGAATATCTCTGTGACGATGCAGTCACAAGTTC--TGCAGTTACTT-CTGTGTGACAGGGTCTGTTTGGATC------ATGCTTGCACA-GGTGTCGATATACCATCCTGGAACACGAGGACTAACCCTCCTTCCCCT----CAACGGATGGTGACAATCATTTATTGGCTCTCACTGAAGACACAGCCCTTATCGCTGGGGGACTCAGCATCTCAGAGGAGGATGGGCTGTGCATGCAGAGGGAAGACAGGG--AGCAAAGTCTGTGCAGAAGGTCACCTCACTCACATTTGACTTTTGTATCCGTGAACTTCAGTGCAGCGTGTACCCAGGATCTATTTTCTGCCTCCATTCCCCCTCATTCCCT-----GGTGCCATTAGTTCCTTTTCCTAAAGTCCTCATGGGTC---------TCCCCCAGCCCTGGA-CTCTTACCTCCACCATCACCACCTGACTCAGTCCCTGCTGCCCGCCCACTGGCCTGCCTCACCACCAGAGCCCCACG-CATCACTAACT-TCAGCACCCG--TGCCCACCCAAAAAT--GTGTCCACATCCCTCTCTCCCCAGAGGTCTCTTTTTCCCTCTGTTTCTTGGGCCTGACTCCGACCTTTCCTTCCAATTCATTCCTTCCACACCTCAAGAGCCCCCTGGAGAGACCTCACAGGCTCCCCTCTCCTGGCCCAGCTCTACAACGCCTCCC-TCTCCCACAGGCAGAGCAAGA-CTCCAGTTTCTCTCTCC-TGTGACAAAAG-TGTGCGCCCAAAACTTGCAGCACGAACTGTTTATTTTTAGGTTTAGATTTGGGGTCTGG-CTTTTAATTCTTAGTTTGTTCTCAAGTCCGATCTCAG s mm5.chr11 118475439 1191 + 121648857 CACACACACACACACACACACAAACTCACATACACACATTCACACACACACAAACACAGCTCAAGCCCAGCTTGCGCTGTCCCCT-CTT-CTG---TGTTCTCCCTTCCTTGGGCCTCTGCCAGTCCCTCCTCTTCT---------------GAACACAGGTGCCTTTGGAAGCTCCAGCCCTGAAAA------------ACT-TGC-AAACCAT---AACAAACGACTTTCTCCCAATTGGTACACGCCCGCTG-ACGCTCACTCTCCG----AGTGGAATCA---CAGCTGTCCCTCTAACGGTGTGC-TGTGTCTGT-----ACAAAGAGACAGGATGGAGATTCTACGCAGCCAGACCCAGGGACTTTA-CCTTGGCT-CCTGTCTGAGAGTCA-TTCAGCGAGCCCCATATCTGACTCTCAGATGACACGGATAAGA-GAGCCTCGTGGCTT-TCCGTGA---------TAGGACCCTGCAATCTCAGGATGCAGACAGACCCACCAAGAACC-ACTCCTGTCTCTCTGTCCAGGGTATGCCTTTTA------GGTCACAACTTC--TGCCCATAATTGTTGTGGGTCAGGG-CTATCCATACCCCA-GAATGC-TGTTC--TGTGTTG--ACTCTATCCTGATGGACCAAGATAGTTGCTCCCTGCCTT----CTGTAAGCAG--------------TGGCTCTCCCTGAAG--ATAGCCCTGTCCACAGATAG-TTCATCATCTCGATAGAAAGTGGGACACCTAGGCACAGAGAGGACTGAG--ACCA---------------GTCTCCCTGTGGACGCTTGACTCTAACAG--GTAAACCTGGATGCGGCTCGGAGCT----CCTACT-----CCTCCGATCGCCTCTGTCCCCTCTCTCAGTGACATTTATTCTGTCTCCTGGAGCCCTCATGGGCCTTCCATGGGTTCCTCTGCTCTCTACCTCTTAGTCCCAGAGATTCCACTGGGCCTTTTCCCAGC--CCCCACCTCTGGCCT-CTGTATCTGCTGGGCCTGCTG-CAGTCCTAACTCCCAACACTTATCTGTCCATTCAGAGACTGAGGTTCAC-TTCCTCCCGCGCCAG-GGACCCTCCCTCCCTCCCTTGCTCAGCACCCCCCCCCAACTTCCTC-----------------------------------------------CAGGATGCTCTCTTCAGTC----CTTTATGAGGCCTT-------------GCATGACAGGG-CCCCAGTTTCTCTCTCC-TGT-ATGAGAG-GATGTGCTCGGAA-TCACGTGACGCACAGGATATTGTTAGGGTGAGATGAAGGTGCAGC-CACTTCGCTCTTAACTGGCTCTCAAG-ACGGTTTCAG s canFam1.chr18 28682028 963 + 66173745 CTCACACACGCGTGTAC------------------------------------GCAGAACTAAAGCCAGGCTCGTCCTGACCTCTCCTC-CTAAATTAATTTTTCTTCCTCAGACATTTGCT-GACACTCCTTTTCTGTTCTTTGCCGCACAAAACACAAAAGTCTTTGAAAGCACCAGGCCTGGGAATACCTAATGTGTCCTCTGT-AAATTGGATAAAAAAAGAATTTTCTCCCAATCCATAAAAATCCTTGCTTCGCCTGTTTGCCCTTTAAGTGAAGCTCAC-TGCCAGCCCG--------------CGTATTAAT-----GCAGAAGAAGGAAGTGAGGATCACCCGGAACTGGGT-----------------GGGTGCCCGTGGGGCAGTGGGGTCAGCAGGAGAAGTGTCACCCTCTGGGGTGAGGCTGACCCACAAACCCTCAGGGCCC-CTGGACAATGACCCCGTTTGAAGCTAGAATCC--------------ACCCATGTGGAGCCCTAGGGTGCCTCCCCA---GGGACATCT---TGA------AGCCACACATTCCACGCAGCGACT--CTGTGTGATGGGGACCCTTCAGGTTCCATGGGCACTTG-----TGTGTCAA-CTAGCGTCCTGAAGCACGACGATTGTCCGTCCCCCCCATGCACCTGTTCATGGTGACAACCAATTTCCAGCTCATCCCGAGGACATGGTCCTTCCC-CTGATG--CTCGGCTTCCCACAGGGA--------------------GGCAGATGGGG--AACCAAGTTTTCCCAGAAGGCCACCTCGCCCCCACATGACTTCCACATC-----------ATCCAGCTTGTCCCTGGGCTCTGTTTCCTGCCTGTGTCCTTCCTTGTCCCCA--------------------------------------GGGCC--------GTTCCCCAA--CTGCA-GCCCAACCTC--------ACACCTGGC---GCCCCTGCCTCCCG------GGCCT---------------------------------------------------------------------------CCTCCCTCGCC----------------------TCCTCCACCTTGGCTCTGACCTCTCCT--------------------CCTC-----------------------CAGG-----------------------------------------------------GAGA------------CCCTCA-----------------TGCCCCACACGTGCACCACCAACTGTTCGTTTTCAGGCCTGCATGTGGGGCCTGGATTTTTCATCCCCAGTGTGCTCTCAAGACCCATCTCAG a score=24647.0 s hg17.chr17_random 1679797 201 + 2618010 CAGTGGGA-GGTGGGAAGTGGGTG---------------GGGGACA-GAGAATG-ATCTCANGCTCATCGTTCCAGGTG---CCTCCCTCTCCACNTAGGTCTGTGGACGGCCTTCTGACCTGGGGTCCTGGGGTTCTTCCAAT--GTCCACTCTTACAGCTC-CCGTCATTCTGGCCTTGGTTTTACCGCTCAGCCTGCA--TACCTTCTTATCATTGTCTTAAAA s panTro1.chr19 78554258 199 + 82489036 CAGTGGGA-GGTGGGAAGTGGGTG---------------GGGGACA-GAGAATG-ATCTCA-GCCCATCGTTCCAGGTG---CCTCCCTCTCCAC-TAGGTCTGTGGACGGCCTTCTGACCTGGGGTCCTGGGGTTCTTCCAAT--GTCCACTCTTACAGCTC-CAGTCATTCTGGCCTTGGTTTTACTGCTGAGCCTACA--TACCTTCTTATCATCGTCTTAAAA s canFam1.chr18 28682991 218 + 66173745 CCTTGGGATGGTGGGAAGTGGGTGGAGCAGAGCAAACTCGGGGACACGAGAAAGAATCTCA-GCCGACGA--CCGGGTGCCACCACCTTCTGCTC-TGGGTTCCTGCA-GGACCTGTGACCTCAGGGAC---GGTTTTATCAAGAAGTGCAGTCTTCTGGTTCACGGTCATTCTGGCCTTCGCTGC-CCGACGGGCCTACAGGCACGTTCTCGTCGTTGTCTTAAAA a score=2383.0 s hg17.chr17_random 1679998 25 + 2618010 TCAGCCAAGGGATGGTTCTTTTCCA s panTro1.chr19 78554457 25 + 82489036 TCAGCCAAGGGATGGTTCTTTTCCA a score=78683.0 s hg17.chr17_random 1680023 809 + 2618010 GAGCATCTCAGTGTCTGGGTGAGATCAGGGCCG--AGGGTCAGGGGACACCTCAGGATGAGTCGTGGGCTGTAGAGTCATAGTGCCTGGGTTCATCTTCCTCCCTGGCAGCCTTGGAGGATACAGtgggtggaatcatgtccccccaaaaca--tgttccnagccctaacccccaggacctgggaatgtggccttagttggaaataaggtctttgcagatgtgatgaagg--taagaggtg------------------ggcccncgatccaatgactggtgtccttagaagaggaggggaatg-agaacacacaggntgcacacacaTGCATGCGTGcacacatgtacacacaca--aatgcacacacacaca--GGAAGGTCGTGCGCGACAG----GATACACAGNGCATGGGNGGNTGGGGTTgcctcatgatgatggaggcagagactggactgacggtgcatctataagccaaggcccacagaggatggccagtggccc-ccagagccaggagaaaggcctccgtgtgtgggacagtttctccctgagaagcaaccccgctgccctcctgattttggatcctggcctccaggaattggtgagaacgaagagctatcgtgagaagccacccagtccgtggcattctgtgatggcagtcACGGGACACCGACCCAGATGATCTGAATT--TCCAGCCCCACTGGCCAGGCTGACTGTCCTGGGGGCT-GCACCTGACACCCNTGTGCTCTGGGGGCCACTGACANCCCNTGAGGACCAGGCC----------------CTGCTGGCTCCTCTCCTNTGG----ATTATTTCCATCTGGGGAGCAG-CGGCANGGGNCCCTCCC s panTro1.chr19 78554482 807 + 82489036 GAGCATCTCAGTGTCTGGGTGAGATCAGGGCCGTGAGGGTCAGGGGACACCTTGGGATGAGTCATGGGCTGTAGAGTCATAGTGCCTGGGTTCATCTTCCTCCCTGGCAGCCTTGGAGGATACAGtgggtggaatcatgtccccccaaaaca--tgttcc-agccctaacccccaggacctggaaatgtggccttagttggaaataaggtctttgcagatgtgatgaagg--taagaggtg------------------ggccc-cgatccaatgactggtgtccttagaagacgaggggaatg-agaacacacagg-tgcacacacacacatgcgtgcacacatgtacacacacacaaatgcacacacacacacaGGAAGGTCGTGCGCGACAGACAGGATACACAG-GCATGGGGG--TGGGGTTgcctcatgatgatggaggcagagactggactgacggtgcatctataagccaaggcctacagaggatggccagtggccc-ccagagccaggagaaaggcctccgtgtgcgggacagtttctccctgagaagcaaccccgctgccctcctgattttggatcctggcctccaggaattggcgagaacgaagagctatcgtgagaagccacccagtccgtggcattctgtgatgacagtcACGGGACACCGACCCAGATGATCTGAATT--TCCAGCCCCACTGGCCAGGCTGACTGTCCTGGGGGCT-GCACCTGACACCC-TGTGCTCTGGGGGCCACCAACACCC--TGCGGACCAGGCC----------------CTGCTGGCTCCTCTCCT-TGG----ATTATTTCCATCTGGGGAGCAG-CGGCAGGG--CCCTCCC s canFam1.chr18 28683419 661 + 66173745 GAGCATCCT--------TGTGAAATCTGT------GGGGGCAGGGG---CAGCGGGGGGACTCGTAG------AGGTC--AGTGCCTGGGCTCACCTTCCTCCCC-GCAGTCGTGGAAGATACAGtgggtagaagtacatcccctgaaggcagctgctgg-agacctgacccccagaccctgtgactgtgatattatttggactcggggtctttgcaggtatcatcaaggattaagaggagatcctcctggaatgcggtggccc-taatgcaatggccggcatccttcgaggatgagggaaatgtggaacaca-----tgcaga---ggacat-----caccta-gtgaaggcaca--gggacagaCAGACACA--GAA-----------------------------------------CAGAGNTG-----TGATGACAGAGCAGGGGAATGCCCCGACG-----------------GGCTTACA-AGGATGGCTGGCAGCCAGCGGGATCCGGGAGGGTGG-------GCGCGG----------CCCGGGGACAC--------------------CTTGGTTCCCAGCATCCAGGCCCCGG---GACTGAGGGATTGGCTT------CTGCCAAGCTCCTGG------GTGG-GGTGGCCCCAGGGCAC--GCGTGGGGCATCTGAATCAGAACACCACCTCCAGCCA-----------CTGAGGCCCAGGACCAGA------------CTGGGGA--------------CAGGGACCAGGCCGGCTCCCGCGAGATGGCTGTTGCCGCCACACTC-AGGTCTCATGATTCCCATCTGGGGAGCAGCCAGCAGAG--CCTGCC- a score=0.0 s hg17.chr17_random 1680832 1 + 2618010 N a score=0.0 s hg17.chr17_random 1680832 1 + 2618010 N a score=57615.0 s hg17.chr17_random 1680833 280 + 2618010 TTCCCGCTCCAGCGCTGGAACTACATCTGGAAGCTCTTCTCACCCTTAATTGTTCTTNAATGCTTTAACACACGGAGTGACTAATGGGCTCTAATTGG--------------GAGCGGTGTCCTGGGGAACTCGCCCACAGCGCCCTCTGCGACCCGCCCAGTCTC----CTCCGCTGCTCACTCACAGAGCTCTAAAGTCACCAAGG--------NAAAAATATTGGCCCGTTTTTCTATTTTTTTAAAAAATGTCACACCAGTGCCAAAAAGCNAGTTTTATCCTTCAGCCAACAAGTATAGGG s panTro1.chr19 78555289 277 + 82489036 TTCCCGCTCCAGCGCTGGAGCTACATCTGGAAGCTCTTCTCACCCTTAATTGTTCCT-AATGCTTTAACACACGGAGTGACTAATGGGCTCTAATTGG--------------GAGCGGTGTCCTGGGGAACTCGCCCACAGCGCCCTCTGCGACCCGCCCAGTCTC----CTCCGCTGCTCACTCACAGAGCTCTAAAGTCACCAAGG---------AAAAATATTGGCCCGTTTTTCTATTTTTTTAAAATATGTCACACCAGTGCCAAAACGC-AGTTTTATCCTTCAGCCAACAAGTATAGGG s mm5.chr11 118477452 274 + 121648857 TTCCTCGTCCAGGGTGGGAGCCACACGTGGAA--------CAGCC-AAATAGTTACT-AATGTTTTAACACCC-TAGCAACTAATGCATTCTAATTGGGCAACTTAACCCCAGAGTCAAGACCTGGGGAACTC-----CGGGATCCTCTGTGACCCTTCCAGCCCC----TTCC-TAGCTCCACCACAGAGCTCC-AAGCCACCAAGG--------AAAAAGTAAGGACCTGGTTTTCTA-CTCTTTAGGAAAGGTCGCAGCAACTCCAACAAGC-GGTTTTATCCTTCAACCAACAAATGCAAGG s canFam1.chr18 28684080 279 + 66173745 TTCCAGCACCAGCAC-GAGGCTGCATCTGGAA--ACTTCTCACCTTTAATTGTTCTA-AATGCTTCAACACCTTGAGTGACTAATGGGCTGTAATTGG-------------ACAGCTCTGCGGAGGGGGCTGCGCCCACCAC-TCCTCCCCAACCCG-CCAGCCCCAGGGCTGCCCATTCCCCTCCTCCAGTTCAAAAGTCAGGAAAAAAAAAAAAAAAAAACAGCAGCCTG---TTCTA--TTTTTTACAAATGCCTCACTGGTGC--GACAGC-AGTTTCATCCTTCTACCAACAAACACGGGG a score=20789.0 s hg17.chr17_random 1681113 109 + 2618010 CAAAGAAAAGGATAGAGGCAA------AGCCA--AAAGCAGATGGGACAAAATATCACAAATGCCACTGAGGTCTGTGACATCTGTCTAGAGAC--------AAAGAG--TT-CTTGGAGGCAAACCC s panTro1.chr19 78555566 109 + 82489036 CAAAGAAAAGGATAGAGGCAA------AGCCA--AAAGCAGATGGGACAAAATATCACAAATGCCACTGAGGTCTGTGACATCTGTCTAGAGAC--------AAAGAG--TT-CTTGGAGGCAAACCC s mm5.chr11 118477726 126 + 121648857 CCAGGAAGAGGACAAAGGAGATGGTGCAGCCACCAAGGCCTGTGGGAGACAATATCACAAATGCCACCATGCCCTGTAACATCTGTCTAGAAGCTGGCCCGGTATCAG--TTGCTTAGGAATCATCCC s rn3.chr19 11584044 108 - 59223525 CAAAGAAAAGGCAAGAGACAA------A--CAGTGGAGCAGGCAGGAGAATAAAAGTAAAGGGCAACTGAGCCTTGGGCCCTCT---CAGGCAG--------AAAGGGCCTC-CCTGATGAGAAGCCC s canFam1.chr18 28684359 111 + 66173745 CAAAGAAAAGGATAGCAGGGA------AGCCA---GAGCAGACGGAATCAAACATCCCCACCGCCTCCCGGGCTGGTGACAGCTGCCCGGGACA----CACAGGAGGG--CC-CCCGGGAGCAACGC- a score=4229.0 s hg17.chr17_random 1681222 32 + 2618010 CACGCCAGTCAGTTCAGGGCGTG-TGAAGGATT s panTro1.chr19 78555675 32 + 82489036 CACGCCAGTCAGTTCAGGGCGTG-TGAAGGATT s mm5.chr11 118477852 15 + 121648857 AAAGCC------------------TGGAAGGTT s canFam1.chr18 28684470 33 + 66173745 CACACTGGTCAATTCACTGGATGCTAAAGGATT a score=44433.0 s hg17.chr17_random 1681254 394 + 2618010 CCAGCCACACGTTTCCCCTTGNAAGGGGAAAGGAAAGAGGGGATAAGGCATCTCTGATGTCTTCTCATCTCCTCTCCGACCCCTGTNGAGGGG--NTAAGTG----GTGACTGCCAAGTCACCAGAACTGCAGAGAAGGAACCAGATGATAGAGAGGATAGGCA-GAGGCAGGGTGGCAGAATTNAGGGGGTCTGGAAAAGAAAGTGCAGAAAAGCCTGAAGTGCACACAATTCCT-CAGTGGGGTGGCGGGGACAGAGAGAGACAGACAGAGACAgagaaggaggaagaggagggggaatgagaaaggaaagaagtangggggagagaaaaaaga-agaaagaggagaaagaggaaaaggagacggaagaggaagaagaagaaaaggaggaggaggaAGGTg s panTro1.chr19 78555707 389 + 82489036 CTAGCCACACGTTTCCCCTTG-AAGGGGAAAGGAGAGAGGGGATAAGGCATCTCTGATGTCTTCTCATCTCCTCTCCGACCACTGT-GAGGGG---TGAGTG----GTGACTGCCAAGTCACCAGAACTGCAGAGAAGGAACCAGATGATAGAGAGGATAGGCA-GAGGCAGGGTGGCAGAATT-AGGGGCTCTGGAAAAGAAAGTGCAGAAAAGCCTGAAGTGCACATAATTCCT-CAATGGGGTGGGGGGGACAGAGAGAGACAGACGGAGACAgagaagtaggaagaggagggggaatgagaaaggaaagaagta-gggggagagaaaaaaga-agaaagaggagaaagaggaaaaggagacggaagaggaagaagaagaaaaggaggaggaggaaggtg s mm5.chr11 118477867 331 + 121648857 TCAGACGAGAGTTCTC------ATGGAGAAG-------------ACGGAATCTCAGGAGCCTTCTTACCTCCCCT------------GATGAGTCTTGGATGTCATGTGACTGTGAACCGTCCCGGACTACAGGGAAAGGA--AGAGGACAATGAGACCGAGCATGGAGCTGGGCC---------AGCAGGTCTGG-GAAGGAGGCATAGAGAAACCTAAGGTGAAAGGAAGTCTTGCAATGGGAGGGAAGAG-----------------GGGAGAGGGGAGGAGGGGGAGGAGGGAAAGAGAGAGAGGAGGGGAGGA-GGGAGAGAAGAGGAGGAGGGAAAGAGGGGGAGGAGTGAAAG--------AGGGGGAGGAGGGGAGGAGGGGGAGGAGGGGA--- a score=54090.0 s hg17.chr17_random 1681648 604 + 2618010 ctcaccctgtaaccccagcactttgggaggcctaggtgggtggatcacttgaggtcaggagttcgagaccagcctggccaacagggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcctgtaatcccagttactcgggaagctgaggcaggagaatctcttaaacccaggaggtagaggttgcagtgagctgagatcgcgccactgcactccagcctgggtgaaagagcaaggctccgtttcaaaaaaaaataaataaagataaattaaaaaaaaaaaaaAAAAAGAgggcgcggtggctcacacctgtaatcccagcactttgggaggccaaggcaggtggatcacgaggtcaggagatcgagatcatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaacattagccagacgtggtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagtttgcagtgagctgagatcgccccatcgcactccagcctgggcgacagagcgagactccgtcaccgg-aaaaaaaaaaaga s panTro1.chr19 78556096 599 + 82489036 ctcaccctgtaaccccagcactttgggaggcctaggtgggtggatcacttgaggtcaggagttcgagaccagcctggccaacagggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgggcgcctgtaatcccagttactcgggaagctgaggcaggagaatctcttaaacccaggaggtagaggttgcagtgagctgagatcgcgccactgcactccagcctgggtgaaagagcaagtctccgtctcaaaaaaatataaataaagataaattaaaaaaaaaaAA------GAgggcgcggtggctcatacctgtaatcccagcactttgggaggccaaggcaggcgaatcacgaggtcaggagatcgagatcatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaacattagccagacatggtggcgggtgcctgtagtcccaggtacttgggaggctgaggcaggagaatggtgtgaacccgggaggcggagcttgcagtgagctgagatcgccccatcgcactccagcctgggcaacagagcgaaactccgtcgccgataaaaaaaaaaaga a score=6577.0 s hg17.chr17_random 1682252 43 + 2618010 GGAGGAGGAGTAGGAAAAAAGGGTGAAACAGAAGCAATGGAGT s panTro1.chr19 78556695 43 + 82489036 ggaggaggagtaggaagaAAGGGTGAAACAGAAGCAATGGAGT s mm5.chr11 118478206 43 + 121648857 AGGAGAGGAGGAGGGAAAGAGGGGTGAGGGGAGAAAAAGGAGG a score=102341.0 s hg17.chr17_random 1682295 845 + 2618010 GGGGCCCCAGGTCCTTGTCTCATGTCCTCTTTCTCACAGGGACATCCTCAGAGCTTGCTCTGGTGGTGAACANAGCAAAGGGGCAGGGTGGCAGAATTAGGCAGG----ATCAGAATGAGGGACTGAAGTGGCTGAGCCTGGCATCCTTCCNTAAA---TATTTTCCAAATACATTTCTTAATAGAAAAGGAATCACAGAAGTTTTTAGG----ACCCANAGTCTCCAAAGA-CTGGCTCAAACTAAAGTCTTCTCATTAAAATATTGGATCCAAGAAGGAAATAAGATGCCCCTGTAGGAA--------GG-AGAGACCCCAGCAACGTCCTTCAGCTGGGCACCGCCTGTTCCACCCAGGAGCACCTAGGACGAGCTCCTGC--AAAAGGAATGCATTCACTGCAAGCCTGGGA---------GCAACGTCCCATCC-------GCTTCTGGTATAACTAAATGAAGCCATGATC---CCCCTCTCCCCGCTGCCAAGCA-ACGCTCAT----GTGCTCCAGGAAGCCCCA---------------CGCACGTTC---CCACGGCTCATGCGGGCAGCCTGTGTCTCGGCTCAG-CCCTCAAGGGTGCCATGCTCCCCGTGTGATGGATTCCAGTTTAACAGCTNTTTAAAAACAAGCAGACAAGAGAC-GGGCGTGATGGATGAGTGCAGGAAGCACGCTCATTTGGAGATGATTTATGGGAANGTCATGTGTTGCCGCTCATGGGTGTGTCCCTGAGGGTGGGGGCCGGGGTGGATGGATGAGTTT--------------GGATA-----------GTGTAAGCTGCACTACCACGGCAGGCTCACACTCAGCCCCATGGCGTGTG--CGGCAGCTC----------CCGCTCCCATCTCATC----------------ACGGCAGGCTCACACTCAGCCCCATGGCATG--------------------CGCGGCAGCAC s panTro1.chr19 78556738 782 + 82489036 GGGGCCCCAGGTCCTTGTCTCGTGTCCTCTTTCTCACAGGGACATCCTCAGAGCTTGCTCTGGTGGTGAACA-AGCAAAGGGGCAGGGTGGCAGAATTCGGCAGG----ATCAGAATGAGGGACTGAAGTGGCTGAGCTTGGCATCCTTCC-TAAA---TATTTTCCAAATACATTTGTCAATAGAAAAGGACTCACAGAAGTTTTTAGG----ACCCAC-GTCTCCAAAGA-CTGGCTCAAACTAAAGTCTTCTCATTAAAATATTGGATCCAAGAAGGAAATAAGATGCCCCTGTAGGAA--------GG-AGAGACCCCAGCAATGTCCTTCAGCTGGGCACCGCCTGTTCCACCCAGGAGCACCTAGGACGAGCGCCTGC--AAAAGGAATGCATTCACTGCAAGCCTGGGA---------GCAACGTCCCATCC-------GCTTCTGGTATAACTAGATGAAGCCATGATC---TTCCTCTCCCCGCCGCCAAGCA-ACGCTCAT----GTGCTCCAGGAAGCCCCA---------------CGCACATTC---CCACGGCTCATGCGGGCAGCCTGTGTCTCGGCTCAG-CCCTCAAGGGTGCCATGCTCCCCCTGTGATGGATTCCAGTTTAACAGCT-TTTAAAAACAAGCAGACAAGAGAC-GGGCATGATGGATGAGTGCAGGAAGCACGCTCATTTGGAGATGATTTATGGGAA-GTCATGTGTTGCCGCTCATGGGTGCGTCCCTGAGGGTGGGGGCCGGGGTGGATGGATGAGTTT--------------GGATA-----------GCGTAAGCTGCACTACCACGGCAGGCTC--------------------------------------------------------------------------------------ACACTCAGCCCCATGGCGTG--------------------CGCGGCAGCAC s mm5.chr11 118478249 714 + 121648857 AGG-------------------------------CAGAAAGAAA------------------GGGAGGAATAGAGAGGACGGAGAGGAGGG--AAACTCGGGAGAAGGCAGCAGGTAGAGG----AAAGTGG-------------------------------------------------GTAGAAA---AACCATGGGTTTCCCCAGGGTGAGCCCAGTGCATCCTGGGAGCTCATTCCAA-TGAAGTTCCCTAATTAAACCATCAGGTTCTCGAGAGAGCCCAGATG--ACTGCAGGAGTCCTGCCCAG-GAAGCCCTGTGTGGGGCC-----AATGGGCCCCAACCCTTCTATCCAGCAGCAACTCAGCACAG----TGG--GACAGCAGCACA-GCAGGGCAGGCTCTGGACAGACAGATGGGAAGGTCTATCTCTAAGTGGCTTCCCATGTGGCTGGGTAAAGCCATGATCACACTCCTCCCCACACT-CCTCCCT-ACACTCCTCC--TCACACCAGGAGGCCTCAGTAAGCGGGGCTGGGGGGATATTCTAACCACCACAGACTCAGGCAGCCTGTGTA-CAGCTCAG-CCCAAGGTGTCGGCAGCATCCCC--GTGATGGATTCTGGTTTAACAGCT-TTTAAAAACAAGCAGAGGAGAGCC-GGGCATGATGGATGAGTGCAGGAAACACGCTCATTCGGAGATGATTTATGGGAT-GTTGCCCGTCG-TGCTCATGGGACGCAGCTCGAGGGTGGGGGCCTTGG-AGATGGATG----------------------------------------------TCTTCCAACGCTGAGCA-----------CTTGTAGGGTGT-CGGCAGCTC--------AACCACAAACATGT-------------------------------ATGCTCCACCCCA-------------------------------------- s canFam1.chr18 28684552 880 + 66173745 GGGAGCTCCCGTCCTCCTCCCCTCCCCTCCT---CAAGGGCACATCCCCAGAACGAGCTCCAGC---------AGCAA---------------GAGCTCAGAAGC----A--AGGATGAAA----------GCTGATCTCAACGCCCTTCC-TGAATCCTCCTTTCCAAAACCATTTAGCAATACAAGAGGGACCACAGCTGTTCCCAGAAGGAGCCATGTTTCCCAGAAGA-CTGGCTCAAGCTAAAGTCTTCCAACGAAACTACCAGGTTCAGG--GGAAGTGAGATGCCCGCATGAGAA--------GGCAGAGGCCCCAGCAGCATCCTGAAGGTGGTCCTTCCCTGCCTCA-CCGGCAGCAACCAGGACTTCCTCATGCGTGGCAGGGATGTATTAACTGCAAGTGTCAGA---------AAAACATCCCATTA-------GCTTCTGGTGTAACTAGATAAAGCCGTGCTC---TCCCTCTCCCCACCACGGGGGAGACGTTTACCTCGATGCTCTAGAAAGCTCTG---------------TGTGCATTA---ATATTGCTGATGCGGGCAGCCTTTGCTTCGCCGGGGCCCCCCGAGGATG---------CCCTGTGATGGATTCCAGTTTAACAGCT-TTTAAAAACAAGCAGACAAGAGACGGGGCGTGATGGATG-GCGTGGGAAGCGCGCTCATTCGGGGATGATTTATGGGAA-GTTGCATGTGGCAGCTCAGGGGTCCGTCCCCGGGTGGGGGGAGGGGTGTAGATGGATGGGTTCCCGTGTTGAAGCGGGGACAACGCCCGACATGTGCCGGCTGCGCAGTTACGACGCTCTCACTGTCTGCCCCAATGCCAGAGTGTGGCAGCCCCTGCTTTCGGGTGCACACATGTCCCCGGACGTGGTCATTTTTAAGACGAGCTTGTGGCCCAGCCCAAAGCCAGTCTTGAGCAGAAGGCTGAACTCCGGCTGCAC a score=33128.0 s hg17.chr17_random 1683140 218 + 2618010 CCGCTCCCATCTCATGCTGTCTGCA-------------------------TCAG------GGCAGAAGACTT-----TGTTTNATCTCTCAGCTCCAGAACA-AAGATGCTCCCCCATCCCCAAAAACATCTAGAGAAGAGACAACCGGCCACATTCCTTGGCTCCTCTGTGTGACCCCAACAACGAA--CAGCAAT---GTGGTTTAGGAAAATTCAGGTTATCCCATGAGAGTGGTGAAGGGGAGGGGAAAGGAAGGG s panTro1.chr19 78557520 217 + 82489036 CCGCTCCCATCTCATGCTGTCTGTA-------------------------TCAG------GGCAGAAGACTT-----TGTTT-ATCTCTCAGCTCCAGAACA-AAGATGCTCCCCCATCCCCAAAAACATCTAGAGAAGAGACAACCGGCCACATTCCTTGGCTCCTCTGAGTGACCCCAACAACGAA--CAGCAAT---GTGATTTAGGAAAATTCAGGTTATCCCATGAGAGTGGCGAAGGGGAGGGGAAAGGAAGGG s mm5.chr11 118478963 180 + 121648857 --GCCCCAGTCGCCTACAAGAGGCA--------------------------CAGAAGGCAGGTGGAAGACTT-----GACTT-TCCCTTCGGCTCCTAAACGTGAGCAGCTCTCCCCT-CTCAGAAACATCTGGAGAAGGAACAGCTGGTCACAGCCTCTGGTTCCTCTGAGTGACACCCGCAATGGA--TACAAAT---ATGGCTGAACAGCA----------------------------------------GAAGGG s canFam1.chr18 28685432 244 + 66173745 TTCCTCC--TCCCCTGCAGGCTTCAGGAGCACCCTCTGAGGTGCAGGAGGTCAG------AGCAGAAGACCT-----TGTGT-GTCTCTCAGCTCCAGGACA-AAGGTGGCCCCCCCGCCCCAGAAACACCTAGAGAAGGAACACCCGGCGGTACCCTCTGCTTCATCT-AGTGACCCTGACACACAGCTCAGTGGTTTGGTGGCTTGGGAGGACTCAGGCAGTCAGGTGAGAATGGCAAGGGGGAGGGAGGGGACGGGG s fr1.chrUn 298098594 208 + 349519338 CCGCCGCCGGTTCC-GCTCGCTCCA-------------------------CCGG------AGCAGCGCCCCTCCCAGCGTTC-CTCTTCCACTCCCACACAA-TCACAACACTCCCAGCAGCACAAACAGTCG----AGACACTTCAACCAACAATCACAGACCCC---------CGCCAACAAGGAC--AAGCACG---GCGGCGCCGGGACATTTAGGAGAGGCGGGAACGCTGGCGGCGGGGAGGGGGGGGGCAAAG a score=60816.0 s hg17.chr17_random 1683358 499 + 2618010 AAGGGTCAGGGTTGGAGGAGCAGATGACCCTCCTCTGGAGTTTTTGCTCAGGCCC--------ATCTCTTCCCTGTGGAC----CTGAAAGACCCATCTGCTCCAGGCCTCAGCCACTGCATGTAACAGACAAATCTCGTTTTGCAGCA------------TCCATGTTTTTAATAANGGACTTAGAATTTACTATACAGTAAAACCCAAATTGAATCCATAGTTAAAGGGATGAGCTTTAAAACGNGGATCTAATTGACAGGACCCTTTCCGAGGCAGAGGCAATGAAC-------------------------------------------------CAGGGCTGAG--------GCAATGTCCT----------AGGAGGAAACTGCTTC---CTCCCCACACTCTCCTTTGAAGCAAGGACTCGCCTGCAGTGATGGGGAGTCTCGGTCGAAGGGCT-CCTTGCCAA-GGCCATTCCTGAATC-------AGAAAGGCCAGCCCGCC------------TCACTG-----GGGCAAAAGCTCCTGCAGGCTT--TTCCCTGCCCGGGTT--------------TCTCCATCACT-----GTTCTCCAAGTCCCTCTTAG--GAAGCCC-------CTTCCTCTAG s panTro1.chr19 78557737 509 + 82489036 AAGGGTTAGGGTTGGAGGAGCAGATGACCCTCCTCTGGAGTTTTTGCTCAGGCCC--------GTCTCTTCCCTGTGGAC----CTGAAAGACCCATCTGCTCCAGGCCTCAGCCACTGCGTTTAACAGACAAATCTCGTTTTGCAGCAGATTAATTTCCATCCATGTTTTTAATAA-GGACTTAGAATTTACTATACAGTAAAACCCAAATTGAATCCATATTTAAAGGGATGAGCTTTAAAAC-AGGATCTAATTGACAGGACCCTTTCCAAGGCAGAGGCAATGAAC-------------------------------------------------CAGGGCTGAG--------GCAATGTCCT----------AGGAGGAAACTGCTTC---CTCCCCACACTCTCCTTTGAAGCAAGGACTCGCCTGCAGTGATGGGGAGTCTCAGTCGAAGGCCT-CCTTGCCAA-GGCCATTCCTGAATC-------AGAAAGGCCAGCCCACC------------TCACTG-----GGGCAAAAGCTCCTGCAGGCTT--TTCCCTGCCCGGGTT--------------TCTCCATCACT-----GTTCTCCAAGTCCCTCTTAG--GAAGCCC-------CTTCCTCTAG s mm5.chr11 118479143 451 + 121648857 ACCGGGCAAGCTGGTATG------------TCCCCTGTACCAGTGGGTGACAGAC--------GTCTCCTTCCAGCATGT----CTGATGGACT--GCTGCCCGCAGACT-GGCCACTACA----------ACACCTCATTTTGCAGCAGATTAATGTCCACCCATGTTTTTAATGA-AGTCTTGGAATTGGCTGCACTGTTAGATCTAAATTGACTCCATATTGAAAGAGGTGAGCTTTTAAGT-AAGACCTAA-GGACAAGGTCCTGCCTAA-----AGGCAAGAAATGC----------------------------------------------AGAGGGCAGGG--------TCAAAGGC------------AGGAGGAAATCATTTC---TTCTCT-CATCATCCCTTG-AGCAAGGACACATTGACATTAGTAGAGA-TCACACTAAGTGAGCTACAATGTCAA-AGCCATTCCGGGAAC-------TGTGA-CCCAGCTCTGT------------CCA--------GGCTGTAGGCTACAGCAGGCTC--TT------------------------------------CT-----GACCTCAAAACCACTCTTAG--GAGAAGT-------TCTTCTCCAA s canFam1.chr18 28685676 610 + 66173745 AGGGGCCGGGGCCGAAGAGCCAA--GACGCCCACCATGAGTTTTTCCAGGGAACCAAGCGAGTGTCCCTCCCCGGCGACCCGCACCGCAGCACTGATCCATCCCAGGTCTCCATCACCACA-CCAAGAGACAAATCTCATTTTGTAGCAGATTAATTTCCGTCCATGTTTTTATTAG-GGACTCAGAGTTTACTATACAGTAAAATCCAAATTGAATCCATATTTAAAG-GATAAGCCTTAAAAT-GGGATGTGATTTATGGGACTCTTTCCAAGGCCGAGGAGGGGAGTGCCCCCAGGCCCCCAGGCCCCCAGTGAGGACGATTCCGCAGCGACTGGACTGGACCGGGAGTTAGGCTGAATGGTCTGCATGCCCAAGGGGTGGGACAGCCCCGCTCACCCGAGAAGCTCC-----AGCAGATGCTCGCCTACTCTGA------------------------CCTTGCCCGTGACTGACCCTGAAGCGCTCTGAGGAGGCACCTGCCCGTTGACACGCCACCACCACAGAAGGTGTGCAGGAGCACCTTACAGCCTGGCTCTCTCCCCGGCTTCACCCCCCTCCCGACCCCCATCCCTGGCTGGCTCTCC----TCCTGCCAGCAGAGGCCCAGGTGCGCTTCACCCGG a score=10072.0 s hg17.chr17_random 1683857 123 + 2618010 --------TCACATTCCTTTGG----------GCCATGGACGGCA----------------------------TCCACATGCCAGAGCT-------CTGGTAGCCCAAGGGGTGGTTTTGGCGGCCCCTTCTCTGAAGCCCATGTCCAGGCTGCAGGGAGAACCCAGGAGCTCGCG--------------- s panTro1.chr19 78558246 123 + 82489036 --------TCACATTCCTTTGG----------GCCATGGACGGCA----------------------------TCCACATGCCAGAGCT-------CTGGTAGCCCAAGGGGTGGTTTTGGCGGCCCCTTCTCTGAAGCCCATGTCCAGGCTGCAGGGAGAACCCAGGAGCTCACG--------------- s canFam1.chr18 28686286 186 + 66173745 GAAGATGATGAAATCCCGGGGGAGGGCCCTCCGCAGGGGAAGGGACTGGCTTGTCTGCTCCTCTCCCTTTTTTTCCAGACATCAAAGCCGGATGCACTGGGGTGCCCAGGGGTGGGTCTGG-----CTCCCTCTGGAGCTCCTGTCTGGGTCCCCTGGAGAAGAGTGGGGGGCACCACCGCCGCCGCCACC a score=54602.0 s hg17.chr17_random 1683980 472 + 2618010 GGGCAGGAGGGTGTCTACAGG--------------CACACCTGACCTCAGATGTGTGTACATGGCCCNTCTTCCTTCAGACACCCGCCATCCACCATCCTGAAGGTGAATAAAAGACAGGCAGAG----ATTCAAAGCCACACGCAGG--CCTCAGACTGCATTGCTC-----------------CTTGCTCTGAGGGGCTTCCTCTCAGAGGGGCTTCCTTCTCTCCCCTTGACCTCACCCTTTTAGAAAAGGAAGACTCTGAAAGGCAGATTCCTCACTTCACAA-TTCAGAGCACACCTTTGG--AATCAACAAGGGGCTGGACAGTGAACACACCGAGGGAAGCAGCT-CAGGTCCAAAAGAGCTTGTGGGGTGACCCCACCAACCCTGGACTTCCCAGACGCTCCCTCGGGGGTGGGCTGGTC-TTGTACTTTCACTGTTGATGACCCCGAGGATTTACCTATTTGGGGGACACAGGTTCTCAGACCCACAGAAAGGTGAGGCTGGGCC s panTro1.chr19 78558369 467 + 82489036 GGGCAGGAGGGTGTCTGCAGG--------------CACACCTGACCTCAGATGTCTGTACCTGGCCC-TCTTCCTTCAGACACCCACCACCCACCATCCTGAAGGTGAATAAA----AGGCAGAG----ATTCAAAGCCACATGCAGG--CCTCAGACCGCATTGCTC-----------------CTTGCTCAGAGGGGCTTCCTCTCAGAGGGGCTTCCTTCTCTCCCCTTGACCTCACCCTTTTAGAAAAGGAAGACTCTGAAAGGCAGATTCCTCACTTCACAA-TTCAGAGTACACCTTTGG--AATCAACAAGGGGCTGGACAGTGAACACACCGAGGGAAGCAGCT-CAGGTCCAAAAGAGCTTGTGGGGTGACCCCACCAACCCTGGACTTCCCAGACCCTCCCTCGGGGGTGGGCTGGTC-TTGCACTTTCACTGTTGATGACCCCGAGGATTTACCTATTTGGGGGACACAGGTTCTCAGACCCACAGAAAGGTGAGGCTGGGCC s mm5.chr11 118479824 421 + 121648857 GTGCATGTGCATGTGTGCAGGAGTCAGCAGCCTGACATGCCTGGATGCTCATCCATGTGCCTGACC--TCATCCTTCAGA-------GATCTACCATCCTAGAGCT--ACAAAAGACATGCAGA-------------TCACACACAGGTACCTGGGA---CATACCTC-----------------CCTTAGAAGATGGGCTCCCTGTGAG--------TCCAGACTCCCCTTGCCTTCACCCCATGGGAAGGACAAGACTTAGA----------------TACACAA-CTGTCAGAACTACTTTCT--AAATGCACAGAGGTCAGAATGAGTGTGTGCTAGGCAAAGACGCT--ACATGTAAAGTCACTTGGG---------------CTCTGGACTTCCCAGG----TCCATGGGGACCTGCTGGGCTTTGTGCTTTCAGTTTTAATGACCCCAAAGAGCTCCCT-TTCTGGGGACACTGGCTCTCTGAAGCCCAGGAAGGTGAATGTGGGCC s canFam1.chr18 28686472 453 + 66173745 GGGTGGGAGGGTGTCTGCAGGCCCCAGGAGCTGG-CACGCCCGACCACCGCTCAGGGTGCCTGGCC--TCCCTCTTCTCAGACCCACCACCTG----CCCGAAGTGGATTGAA----AGGCAAAGTACAGCCCCGAGTCCTCTGCAGC--CTTCAAACTGCTCGGCACAACTGGGACACCGGAGTCTTCCCCTGGTGCCTTCTCTCCCGCCCTGATTTCCCCCTGTTGCCCCCCCCCCCCCGCCCCAGGGAGGAAGGAAACACGAACACCCTCTGCCCACTGCACAATTTCGGAGGGAGACTTTGTTCAACCAACAAGGGGCTGGAAGG-----------AGAGAAGCAGCTGCAGGTGGAAAGCAACTTGCA--CAGGCCCCACTGAGCGCCGAATTCCCAGGACTGCCATCACCCACCAGCCAGTC-TGGTGCTTCTGGCTCCAACAACCCCCAAAACTGACCTTTTC-----------------------------ACCTGAGGCC----- a score=28280.0 s hg17.chr17_random 1684452 224 + 2618010 CCGCAACCTCNCTTCTTGGAGGCAGCAGGAAGTGGCATTTTCAGAGGAGCATGGGAGATGGTGCTACCGTCACGGCCTGCAGGATGTCTGTACGTCAGGGCCCTCCCCTAGGGACAGAGCTGCACGCATCTTC-TTGGAACTAGGCGTCTGAGGTTCCAGAGACAGAGCATGATCTCAGGGGGTCTCTCGTCCTGCACTGAGGCCAGCCCCAAACC--TCGTGCCCT s panTro1.chr19 78558836 223 + 82489036 CCACAACCTC-CTTCTTGGAGGCAGCAGGAAGTGGCATTTTCAGAGGAGCATGGGAGACGGTGCTACCGTCACGGCCTGCAGGATGTCTGTACGTCAGGGCCCTCCCCTAGGGACAGAGCTGCACGCATCTTC-TTGGAACTAGGCGTCTGAGGTTCCAGAGACAGAGCATGATCTCAGGGGGTCTCTCGTCCTGCACTGAGGCCAGCCCCAAACC--TCGTGTCTT s canFam1.chr18 28686925 190 + 66173745 CTGCAACCTC-CTTC--AGAGGAAA--------AGCCTCTTCCAAGAGTCAC--------------------CTGCCCGCAGGATGTCGGCGCTCTG----CTGCCTCCAGGGACAGCACCACATATGCTTGCTTTAGAACCAGGGTCCTGAGATTTTGGGGACAGGGAATGACCGCAGGGTG--GCCTGGCCCACACGGAGGTCAGTCACAAGCCATACGTGCCCT a score=2234.0 s hg17.chr17_random 1684676 39 + 2618010 ATACTCATTT---TCTCAGACAGCCTGCAAGCACAGTGATCT s panTro1.chr19 78559059 40 + 82489036 CTACTCATTTGAAT--CAGACAGCCTGCAAGCACGGTGATCT a score=3268.0 s hg17.chr17_random 1684780 139 + 2618010 CTGCAGGGAGCCCCAGGACAGAAAGAGCCAGAAAGAGCAGTGGGATTCCTGCCCTCTAAACAGTCACATTGCT--GCTTCTCTGTCCCATACAGGCTGGGGTGTGTGGCCTTCCTATCTGGGCTCCCCGAGGGGGCCCCTG s canFam1.chr18 28687115 134 + 66173745 CTAAGGGGACCCGCAGCACTGAAGGATTTAGAAGGTCCCGAGGGATGGAGACCTTCTGAGCCATCACAGGGCCTGGCTCCCCTGTCCC-----TGTCCCGGTGTCTGACCTTCCTCTGCAGGCTCTCTAAGGGAACCCC-- a score=100.0 s hg17.chr17_random 1684918 1 + 2618010 G s panTro1.chr19 78559302 1 + 82489036 G a score=166168.0 s hg17.chr17_random 1684919 1412 + 2618010 ATGGTTTACGGAATGGGGTGACAGCCGTTTCAGCAGAGGAGGGGAGTTGTTTAAGGGT-TTATCTCAGACA-----------------------------------------------------------------TGGGCCCAGATccaccactcctctcctcccgggtccatggcagagccagtgctcccagggatagagtgcgacagtgggctcgctcgtcagctgtcccttgcttccactctgtccccctcacagaaggcagagacacctttgtatgtctcaggccattncaatccctcactcagagccctgcagtggctcccaccacccttaagac-aaaatccaaagtccntcagtcccaacctaaaggcctctgcatcca-gccctggaccctcttcgtcatctccttcctccacctgcacagcccccggaccccgtgatgccagcccctcctgctacttctccagcatgcccacacgttgctgccntcggcgccttggcactggccattccctctgtctggaacactctcccctcagacatcctggggtcctccctcccttccttctgtcttggctcacaacatcagca-ccggggcctgccctt--ctgtcct-gggcaactgcagcccccaccattccccgtggtcttaatgcactgcatttatcttcacagcgttatggc---gcctgacatacatttattcgccatgt------nccctgctaaaatataaacaccatgagggccagaacttgaccnttgtctccacntgcgtctccagcaccccaaacagggctcagcacatcgggggctc---aaggttgtggaatg-aacaaTGTAGGGCAGTCTGGATGGAT-GAGCTACGGCANAGA---AGACCCCAAGGAGCCCTGGAGCAGAGAAGAGCACCCATGGCCTTCACCAGAGAGAAGCAAGCAGTGCACGCCTGGAGAAGCACCCAGACTGTGCATAGAGACTTCCAATTCTGCAAACTCTGGAAAGAGCATCTTTTGATGGGTATTGGAGAGACCAGCCTGTGTCCGGGCCTCTGGTCTCTTTGTCCAGGGTTCTCGTCGGCATCATCTGCTCAGCCTACAGTGGGTCATCATGCAAAGC------CTGCCTGCAGGCTTCAGGGCTCCAGTCCTCCCTGCC------TGGGGGTCGCTGACCC-ACAGCTTTGCATTGTCTATCAGCAGGGAATNGGGGCTGCACTGAACCTCATGGGGGTTTAAGAAAGAATTCACCTGGTGTCTGTCCCTGGTTCCTGGGAGGTGATCTCTAAAACTGCTGGGGTTTCCAAGGGATAGGAGTGTCTTCTGTTATTCATAAAAAGCCACTCCTGACCACACCTGACCGTGTGCTGACCTGGCAACTCACAG-GGACCCGTAGGAAGCTTCAAGTGTGAGGCTGGCCGTGCACGTGATTAGAGGGTTGGAAATTTCACTCCCCACCTCAGGGGAGCAGAGAGGGCTAGAG---ACAGCTCAGTCANCGT-------------------------------------------- s panTro1.chr19 78559303 1391 + 82489036 ATGGTTTACGGAATGGGGTGACAGCCGTTTCAGCAGAGGAGGGGAGTTGTTTAAGGGT-TTATCTCAGACA-----------------------------------------------------------------CGAGCCCAGATCcaccactcctctcctcccgggtccatggcagagccagtgctcccagggatagagtgcgacagtgggctcg----tcagctgtcccttgcttccactctgtccccctcacagaaggcagagacacctttgtatgtctcaggccatt-caatccctcactcagagccctgcagtggctcccaccacctttaagac-aaaatccaaagtcc-tcagtcccaacctaaaggcctctgcatcca-gccctggaccctcttcgtcatctccttcctccacctgcacagcccctggactccgtgacgccagcccctcctgctacttctccagcatgcccacacgttgctgcc-tcggcgccttggcactggccattccctctgtctggaacactctcccctcagacatcctggggtcctccctcccttccttctgtcttggctcacaacatcagca-ccggggcctgcccct--ctgtcct-gggcaactgcagcccccaccattccccgtggtcttaatgcactgcatttatcttcacagcgttatggt---tcctgacatacatttattctccatgt-------ccctgctaaattataaacaccatgagggccagaacttgacc-ttgtctccac-tgcgtctccagcaccccaaacagggcttagcacatcgggggctc---aaggttgtggaatg-aaCAATGTAGGGCAGTCTGGATGGAT-GAGCTACGGCA-AGA---AGACCCCAAGGAGCCCTGGAGCAGAGAAGAGCACCCATGGCCTTCACCAGAGAGAAGCAAGCAGTGCACGCCTGGAGATGCACCCAGACTGTGCATAGAGACTTCCAATTCTGCAAACTCTGGAAAGAGCATCTTTTGATGGGTATTGGAGAGACCAGCCTGTGTCCGGGCCTCTGGTCTCTTTGTCCAGGGTTCTTGTCGGCATCGTCTGCTCAGCCTACA--------TCATGCAAAGC------CTGCCTGCAGGCTTCAGGGCTCCAGTCCTCCCTGCC------TGGGGGTCGCTGACCC-ACAGCTTTGCATTGTCTATCAGCAGGGAAT-GGGGCTGCACTGAACCTCATGGAGGTTtaagaaagaattcacctggtgtctgtccctggttcctgggaggtgatctctaaaactgctggagtttccaagggataggagtgtcttctgttattcataaaaagccactcctgaccacacctgaccgtgtgctgacctggcaactcacag-ggacctgtaggaagcttcaagtgtgaggctggccgtgcacgtgattagagggttggaaatttcactccccacctcaggggagcagagagggCTAGAG---ACAGCTCAGTCA-CGT-------------------------------------------- s canFam1.chr18 28687249 1341 + 66173745 AAGGTTCA-GCAGTGGAATAGCAGTCATTTCAGCATAGCAGGGCAGTTGTTTGAAATTCTCACCTCAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGctctga----------cttccctccc--------------------------------------------------ca-------------------------tctattccccacacagaaggcaacgtcatccacatctaactca---------aatctggtgatccaatcccttctgtagctcctaccatctttaagacaaaaaccccaaatcc-ttattcttggcctaaaaacttctgaatttaggtgctacactttct-----accctgctccccaactt------------ggccctggcaggccagtcttctttgctacttctccagcatgcc---------------tcagggcctttgcactagccagaccctctgcctgaaccactctccacagggctcagctggttgccacccttgctcccctcagcctgtgccccgagcagtagcctccaggtcctgcccaggactgtcccaggggaacagcagcctccgccaccctctattgcccttgaccacc-------tttccacagagcctcagcactacccgaca-----ctactctacaggtgcgttcgtcccactagcacgtgaac--------ggcaagggcttggc--ttgtgtccgc-tgggtctcccgcctgcaccaca-ggctcagtgcattgggggccctcgaGGACGGCTGAATGCCAGCATGCGGCTCAGTCAGTGCACATCTACCCACCACA-AGAAGCAGGCCCCAAACA-CCCCGAGGCAGGGA-----GCCCACTTCCGTCAGGAAAAGGAAGTAAGCAGTGCATCCCCGGAGATGC-CCCAGGCCTGGCAGAGAACCTC---ACTCTGTGCACATGAAAGCGGGCACCTTTTGAGGGATACTGGAGGGACCGGCCTGTGTC-------CTTGTCTCCTTGCCCAGAACTCTTATTGGCATCATTTGCTCCGCCCAGG--------GCAGGATGAGCACATGGTGGACTGCGGTGCGAGGGGTTCAAGTCCTTCTTGCCCCGCCTCGGGTGAGCCCGACCCTCCGGTTTTGTGCAGCTTCTCTGCAGGGAGC-GGGGCTGCACCGAGCTTCCTGGTGATGGGGTCCAGAACGTGTCTGGGTTTTGTCCCTGGTTCCAGGGAGGTAACCTCTAACACCTCTGGAATTCCTGAGGGATGGGAGTGTGGTCTGTTATTC------------------CCAGGTCTGGCTTCCTGCTGACTGGGTGGCTCAGGGCGGGTCCGTAGACAG----------------------GCACCT-ATGGGAGAACTGGTGCTTTGCCTTCCCGGGCAGTGGGAGGAGAGCGGGGCAGGAGCCACGGTCCAGCCT-TGTGGCTGATGACATAACAGGACTCCAGTAAAACTCCGGACGTCCGA a score=122986.0 s hg17.chr17_random 1686331 1088 + 2618010 GGCTCGGGGAGCTTGCNGGTTGGTGAACTTGTGGGTGAACCAGCNANGGGTGGTGCATCCTAACANCCATGGGGAATGGGTGTGGATGCTCCGAACTCAA---------------CCTGTGTGTATCATACGACTGTCATACAACTGTCATTTTTAGTGTAGTGCTTTTTTGTTGCTGTCGTtnctgtgaactg---tagcaaattatcaaaactgaggggtcctgggaacctctgaatttgccact----ggtcacaagntgcaggtgaccctggcagctngcattncgaagt-----gagagccatcttacagagcgcttggcccaaanccctgtggagtctg--------acgctgactccggcgg-ttagtgtcagagctgaaCGGCAGTCACCCTCTCGGGGTG-GGAACAGAGNGCATCATGCCGTCCCCTCTAGAGCCACAGGAAGGCTTCAGGGCC-CTCCCTGAGCCGCGGAGCAATCTGGGCAGCAGAACACGAACCGTGCAGGGGAGGGTCAGGCCCTGACTTTGGACTCTATGGCATCTT-TGTTGAC-ACCAGACAGTGGACCCCACACCNCCGCCCACCCTCCTTCCAGGACTAACTGCCCCGCAGCCAGGCTGATGGGCTTCGAGGTACAAAGAGCGGTCACTCCTTAAAAATTCTAC-CCCATACCTTC----TTGGGCGTCNCG-----TCGATGTTCCCCCTCCTACT--------CCAC-AAAGACACCATGACTTGAAAGCTATAGAGAGCAGCA--CAGAACGCCC-----CTACCCCACAACCCTTGCTGGAAAATCAAATCACCGCATTAAAACGTATTTCCTCCACAAATGCAAACTCTGGGGATGGGCATGGCGGACAGGTGGGGCCGCCTTACCTGGTAGTGGGAGGTGAGGTCTGCTTTGCTG-AGCGGGGAGGCCC-CAGTGGGGCTCCTTCTGGACCGTCCTTGGCAAGGAGGGGGC---TGCTGGGGAGGAGTGGCGACCA-CAGGAAGACTGTTAGCTTCTCAGAGGC---AGAATTTCAACCTGCAGGGGGAAAAAANGCAAGTAAAAA--------------AATTGC----CTTTGAAGAAAACATCTTCCTTTTGATCTAAAACAAACATTTGGTATTAATAAACCAGGGAGGGGGCAGCTTCAAA s panTro1.chr19 78560694 1075 + 82489036 GGTTCAGGGAGCTTTC-GGTTGGTGAACTTGTGGGTGACCCAGCA--GGGTGGTGCATCCTAAT-TCCATGGGGAATGGGTGTGGATGCTCCGACCTCAA---------------CCTGTGtgtatcatacgactgtcatacaactgtcatttttagtgtagtgcttttttgttgctgttgtt-ctgtgaattg---tagcaaattatcaaaactgaggggtcctgggaacctctgaatttgccatt----ggtcacaag-tgcaggtgaccctggcagcctgcatt-caaagt-----gagagccatcttacagagcgcttggcccaaa-ccctgtgtagtctg--------acgctaactctggcgg-tcagtgtcagagctgaaCGGCAGTCACCCTCTCGGGGTG-GGAACAGAGC-CATCATGCCGTCCCGTCTAGAGCCACAGGAAGGCTTCAGGGCC-CTCCCTGAGCCGTGGAGCAATCTGGGCAGCAGAACACGAACCGTGCAGGGGAGGGGCAGGCCCTGACCTTGGACTCTATGGCATCTT-TGTTGAC-ACCAGACAGTGGACCCCACACC-CCGCCAACCCTCCTTCCAGGACTAACTGCCCTGCAGCCAGGCTGATGGGCTTCGAGGTACAAAGAGCGGTCACTCCTTACAAATTCTAC-CCCATACCTTC----TTGGGCATC-CG-----TCGATGTTCCCCCTCCTACT--------CCAC-AAAGACACCATGACTTGAAAGCTATAGAGAGCAGCA--CGGAACGCCC-----CTACCCCACAACCCTTGCTGGAAAATCAAATCGCCGCATTAAAACGTATTTCCTCCACAAATGCAAACTCTGGGGATGGGCGTGGTGGACAGGTGGGGCTGCCTTACCTGGTAGTGGGAGGTGAGGTCTGCTTTGCTG-TGCGGGGAGGCCC-CAGTGGGGCTCCTTCTGGACCGTCCTTGGCAAGGAGGGGGC---TGCTGGGGAGGAATGGCGACCA-CAGGAAGACTGTTAGCTTCTCAGAGGC---AGAATTTCAACCTGCAGGGGGAAAAAA-GCAAGTAAAAA--------------AATTGC----CTTTGAAGAAAACCTCTTCCTTTTGATCTAAAACAAACA-TTGGTATCAATAAACAAGGGAGGGGGCAGCTTCGAA s mm5.chr11 118481680 964 + 121648857 AGTTTGAGGCATTTCCTAGCTGATGAGTATGCAGATGAGCCAGGA---GGAGGGGCTCCCTAAC-TTCCCAGGAAGGAAGCATGGAAACACAGTTCCCAGGGTTCTCACAACCTTCTCCCGAGCGTCATA----TATCATACAACTGAAATCACACATGTAGCATTTTCTTGGGGT--------CTACAAACAGGCCTAGGCAATTATCAAAATCAAGAGTCCCCAAGCCC------------------------------TGTAGGTAGCACGGAAAA--TGAATTAAGTCGT-----GTGGGCTGTATTTGAAACCTCT-----------------AAGTGTG--------ACACTGGCCCTGGTGG-CTCCTGTCAGAAC-----------CTGCTGCTCAGCCTGAGGGACAGGGA--ATCACTCTATCACCTTAGCAGCAAGATGGAGGCTCACTGCTG-CTCACTG-GCTTGAGGGCAACCTGGACA--------------TTATGTTGGAGGATCAAATCCCAGCCTTGGCCACTTATACATCTCATACTGACAACCTGGCAGGAG---------------CTATTCTACTTCCCAGATTAAGTTCCCCA-AACTGTGCTGATGAGTGTCAGGACACAGAGA-------------ACAAAGTCAATGGCCGTGATTTC----CTGGGGACC-TGGGGACTCTCTGTGACTTGACCAACTTGTAGAAGCCAC-GAAGACGCAATGAACTGCAAAC-ACAG------GCA--TAGGACACCCTGCTACTGCCCCACTAC-------------TGAAGTGGCCTTATTAGTG---ATTCTCGACGCAAACTCTGATGCCAAGGCAGAGCAGGGTAGCCTTGTG-----GCCTTACCTGTT-----GGGGTGTCGTCTACTTTCCTG-TAGCCAGGGGCCC---GTGGAAGAACTGATGAAGCTTCCTCAGTATGGAGTGTGTGTGTGCCCACGCAGAGTGG-GATCG-CAAAAAAGC-ACTAGGTTCTCACAGGC---AGCTTTTCAACCTGAAGAGAAGGAAAACAAAAACAAAAACAAAAAACAAAAATAAATGCCCTGCCTTGGAAATAGTCCCTTCCCTTTAATAT--AACAAATG-CTGGCACACA-------------------------- s canFam1.chr18 28688590 988 + 66173745 AGCTCAGGGAGCTTTGTGACGGGTGAACGCGTGGATGTGCTGGGA--GAGTGACCTGTCCTATC-CCTACAGGGTGAGGG----------CAGACCTTG----------------TCCCCGTGtgtcctg----catcataaaaatgtagccgtcgatatggctcttaaatt------------cagagagtcattctagcaaattatcaaaactgaaggtcatgggg---------atttgtagctggtaggtcagaag-tgcaagtggctcccaaggcttgtggc-tggcgtctgaagtggggcggccctaagggcaaagggccccgagcctataggggtctgctgctaACCCGCTGACCCCGGGGGCTTCCTGCCACAGGTGAAGTGGAAT----------------GGAGCAAGCA--CGCACACGGCCTGCT------------GGAGGCATTAGACCCGCTTGCTGGGCTGCAGGGAGATCTGGGCA-------------------GGGGAAGGTCAGACC-------TGGCCTCTGCAGCATTCTGTGCTGAC-ACCACACAGCAGACGTGACACC-CTGTCCCCCTGCCTTCCCAGGGGAAA-ACTCTGCAGCCAGGCTGAGGGATTTC-----ACGGAGAGCAGGCCCTCCTTACAGATTCAGG-CCAGCATCCCCCCCACCGGGGGCC-TG-----CCGACGCTCCCCATCCTGCC-CCTGAGCCCACAAAAGACAC---GGACGGCGGTCCTCACACCACAGCAAGCAGGACATCC-----CCACCCTGCCATTCTC--------------TCGTGGCAATAAAACATTTTTCCGTTGCAAATGCAGATGCTAAGGACTGTCCTGGCCGGC-GGCG-----ACCTCACCTGGTAGTGGTGGGTGAGGCCTGCTTCACTGCAGCAGGGAGGCCTCCCACGGGGTTCTTTCTGGAACTTTCTCGG---GTAGAAATT---TGCTGAGAAATAGTGAGAATCAGCAGGAAAAGCTTCAGGTTCTCAGGGACCTGAGATTCTCAACCTGAGGgaaaagaaaa-gaaaagaaaaA---------GATGTAAACGC----CTTTGAAGCAAGCAACCTCTTTTTGATATAAAACAAACA-TGGGTGT----------------GAGTAACCTAGAG a score=-986.0 s hg17.chr17_random 1687419 326 + 2618010 GCCAACTGTTTGCCACCAGGGATCGAGGGATTGAGGGATCAGCACCCTCCAAAGGGCACTTTGCTTTTTATGCCCCAGGGGAGTAAAAGGAAACTTGCAGAAAACACATCATTAGGACCCTATT---GCCAAACAGCCACCGTG------CAGTCCATCCCAGG--GTCCGC-CCCTCtcc--cagcccgcttgcaatggtcccccaatc------ccagggactcttccaccccaccacgctggcccctccccatcgcctttcccactaccgcccgct---cttgcttcctcccccacccagcctagattccaggacccaccactgtccgcactc-------tcccagctacttt s mm5.chr11 118482644 269 + 121648857 GTCAAGAGCCTGCCACCAGGAATC----AGTCATGTGGTACCCGCCCATCCATGGGCACCTAGGCTC---TGCC--------------------------------------TGGCACCCACTCTCGGCCATTCGGCCACC----------------TGCCAGA--GCCATTGCCCTCTCAGGCAGCCCATGTCCTCTGACTCCCCAATC------CCATGGACGCTTGTCCCTCCCCAAGATGTCCCC-------CACCTTCTCCGATGGCTCCTTCTAGCCTCAGTCCCTGTCTCCTCCATCTTAGACTCTA--ACCCGACAC-ATACACACTC--------CACAGATACTTC s canFam1.chr18 28689578 286 + 66173745 GTC-ACTGGTGGCCACCAAGGGTC----A-----------------------------------------CACCCCAGGGGAAGGAGCAGAGCCTGCTGGGAAACAGAGCATTAGGATCCCGACGT-GCCAAGGGGCAGGTGGGCTCCCCCAACCCCTGCCACGCAGTCAG--CCCTCCCA--CCTCCCA----CTGTGGTGCCCCCACCAGCTGTCCTTGGACTC---CCCTCTCCCATGCTGGCCA--------CACCCAGTCTGGTCACGCCCCCG---CTCACTTCCTGCCTCACCCAGGACAGGGTCCAGGACTCCCCACAGCCACCATTCCCAAAACTCGCTGGTCTTT- a score=9284.0 s hg17.chr17_random 1687745 422 + 2618010 gtccctctcttttaaaaatatncatcagatgatgtcactgtcctgatCTGGTGAcacagccntncactggtgtcctgtgtcatttggaagaaacanttaaagttgcttcagtggcc--tgcaagccaggtgaatct------------ggcttctgtgattt------------------------GGGGACTTCCTAAG------------AAAATAACATACGAGGTCTCACATGGGGGCCGTGCGCTCATAGACAGCTTCACGGTCAACC-CCCTTTGCCTTTGGGGCT------CTCGGCAGtctnnntccnncncctagtatactccctctctcccctgcagccccactggcttcctggccatccct---------cncacacaggcgcatgcctccnngaccccacccctgcaccacacctttgcaggtctactg---catggaatgctcttcccTGCACAATTGCAGgcctccctccctccctc s mm5.chr11 118482913 405 + 121648857 GTCCCTCTCTTTTAGTAGGAATGGTCAGATCATGTC-CCGTTCTAAC-------CACAACCCTCCCAGGGCA------GTCAATCGGAAGAAACACCCAACATTGCTTTGATGACCATGGTGAACTAACTCAGCCTTTGGGAGCTCCCAGTTCACAGGATTT------------------------GAGG----TCTAGG------------AAAGTAAGACCAGATGACAGACCC-CGAGCTAAGCTATCACAGGTGGTCTCGTGGTAAACCTCTCGCTGCCGATAGGACTCGTGAGCTCTGGAACCT--------CTCCTATTGCACTCC--CTCATCCCTGTA--CCCA-GGGACTCCAGAATATCACT--------GTATACGCAGGGTAACTCTTCCTGGTGCCCA------TAGCACACCT---CGTGTCCACTGTCACATAGGGTGCTC-GCCCTCTATAATTGCATAGCTCTCTCCCTGCTCC s canFam1.chr18 28690054 391 + 66173745 GTCCCTCtctttttaagagattctctgggtgaagtcactctcctaa--------catctccctccagcggcgtcctatgtccccgggagaaaacacccagggttgcaacactggcc--tgcgagCCAAGTGAAACC------------AGGTTTGGTGACCTCGACGCTTACATGATTTGCGGGGGGGGG----CCTAAGATTACAAAGGCAAAAATCAGCTGCAGGGTCTTGCTT--CAGCTGTGGGCTCA----GTGCTTCCTGGTCAATCCTCCTCTGCCCACGGGACC------CTGAGCAGCCC---------------------------------------CC---GGGCCTCCAGGCCGTCCCTCCGTCCCAACGCACGCGGG----------------CCTCCCCCTGCACCACACCTTTGTGCCTCTGTTG---CTCGGGACCCTCCTCCCTGCACAACTGCCTGGAT-TCTCCCTCCCTC a score=391.0 s hg17.chr17_random 1688167 4 + 2618010 cctg s canFam1.chr18 28690445 4 + 66173745 CCTG a score=15540.0 s hg17.chr17_random 1688516 784 + 2618010 ggagctgtgcacatatggcacctttccaa-ggccatccaggagcagaacaccccatcaaaataaccagcatccctatggcatttccttctccttttccccacgaatttccccccagggacttagcacatctggcttcatgcggatgtgctggatccncgccatccncanctttgccntccactggaatgcaggctccctgagggcaggcatccacaacggctggatttagtgctgaatccccag--tgcccaggatgtgcctggcacatagctggggctcactccgtattcttctgagtggataagtAAATGAATGAATGAATGAACCCACAAAAGTTACTCCCCCATTAATACTTCTGGGTTTATTTAGAATCATATCCCACGATCACACCGGAGAGCAGGAATTCCCGGGATATGGAGGGGACTGAAGGATTCTGTTTGTTTAGTTGGTGAGGGCTGGCAGGGGGTAGNACCCAAGCCTGGGAAGTC--TTGTTTGCTTAATTTACTCCAACCCAAACAGTGTATGTGTGCCATCAGCCAGACAGGACACAAAAACGGTTTAGGAGNATCCACTCTGATTAG-CCTGAGAGACTGTCTCTGGGACAGAGTCATGAGATCAGGGTGGCCAGGGAGTGGCTGAGCTGTGTCTCCCTGAATCCCCNCCCA-----------CCACTGGCAC-CACCCAGAAATTTCACAACGNGNANGTTTTAAACAGCAACACACAACNAATAATAAATCTACCAGTTTGTTTCTTTTCCTAAAATCCAGTCACTGGACAGAGNTACCNACC s canFam1.chr18 28690449 670 + 66173745 GGGACTCTGT-TACACAGCACCCTTCCAGTGGCCAACCTGGAGCCGAACACCCTTCCAATCACAGCGGCTGCCCTTTGGCATCCCCTCCTCCTCTGCCCCATGAATTTCCCC---GGGGCTGATCACATCTGCTACCACACAGATG--------------------------------------------------CCtgagggcagata----catgggtctgtcttaatacc-cgtccccagcgtgcctagacggtgcctggcacacagctggcactccctcggtgtttgtcc-------------agtgaaggaatGAAGGAACTG-----------TCCCCTATGCACACATC-AGGCTTCCGTAGGACACTATCCTACAGTCCC----TGGAGTCAGGATTCCCAGGGAACACAAGG--CCACAGGTTGCTGCT-GTTTGG--AGTCAGGGTTGG--GGGGGCA---CCTGGGCCTTGTCAGGCCTTTCTTTGCTTAATTCACACCAACC-------TGCATGCATGCCAACAGGCAGGTAGGACCCCAAGACCATTCAGG-GCATCCTCTCTGGCCAGTCCCCCAAGACCGGCTCCAGGGCAGGGTCCAAGG--CGGGTTGGCTGGGGAGTGGTC-----------CCCCCAGCCCGCCTCCATGGAAAGGCTCCCACTGGCACATCCCCAGAAATCCCACAATGGA---GCTTTAAAAAAGGA-----AAAAAAGAAAAAGACTACCAGTTTGTTTCTTTTCCTAAAATCCAGTTACTTAAAGGAG-----AACC a score=712.0 s hg17.chr17_random 1689300 94 + 2618010 CCCNATACCGAAGAA-CCGAAGAGCAGAACCAGCATCACAG---AGAGCC-------CAGCAACCC-CGGAG--CAATGCCTGGGGAACATCTGCCCTTT---CAGGGACC s canFam1.chr18 28691119 87 + 66173745 ACCCACATC-------CCAAATGGCAGGGCCAACCTCAC-----AGGGCA-------CTGCCACCCGCACAG--AAATGCCCGGGCACCACAGGCCTTTT---CAGTGACC s fr1.chrUn 328713052 107 + 349519338 CCCTACAGGCAAGAGCCCTAGAGGCAGG---AGCCCTACAGGCAGGAGCCCTAGAGGCAGGAGCCC-TAGAGGCAGGAGCCCTAGAGGCAGGAGCCCTACAGGCAGGAGCC a score=98.0 s hg17.chr17_random 1689394 13 + 2618010 ATTGGTACAGAGC s rn3.chr4 66315335 13 - 187371129 ATAGGACCAGAGC s canFam1.chr18 28691206 13 + 66173745 ATCCGTGCCATGC s fr1.chrUn 328713159 7 + 349519338 ------CTAGAGG a score=-29627.0 s hg17.chr17_random 1689407 84 + 2618010 CCAGTGCC--CACTG---CTGGGTGTGGGAG-CCACTCTTCAATGGCAAAAGTGTAA------------------GTAATAGGAAC---------------------------------------------------------AGTTCCATGGATGAAATGCA-----GC s rn3.chr4 66315348 103 - 187371129 GTGGTGTA--CACTGAGCCTGGGTGTGGTGT-GCACC------GGGCCTGGGTGTGGTGTGCACCGGGCCTGGGTGTAGTGTGCAC---------------------------------------------------------AGGGCC-TGGGTGTAGTGTGCATTGGA s canFam1.chr18 28691219 40 + 66173745 ACAGCACC--AGGAG---CTGGG----------CACC------GAG--------------------------------------------------------------------------------------------------------AGGATGGGAAGCC-----GC s fr1.chrUn 328713166 131 + 349519338 CAGGAGCC----------CTAGAGGCAGGAGCCCTAC------AGGCAGGAGCCCTA------------------GAGGCAGGAGCCCTAGAGGCAGGAGCCCTACAGGCAGGAGCCCTACAGGCAGGAGCCCTACAGGCAGGAGCCCTACAGACAGGAGCCC-----TA s danRer1.chrNA 12616341 80 + 390413307 CCGGTGCCCTCCCTG---CTGGAGCTGCAGG-CCACC------GCGCCCGACACTGT------------------GGGCACGGGCC---------------------------------------------------------GGAGCTGCTCACTGGACGCC-----GC a score=100.0 s hg17.chr17_random 1689491 1 + 2618010 C s danRer1.chrNA 12616421 1 + 390413307 C a score=100.0 s hg17.chr17_random 1689491 1 + 2618010 C s rn3.chr4 66315451 1 - 187371129 C a score=100.0 s hg17.chr17_random 1689491 1 + 2618010 C s fr1.chrUn 328713297 1 + 349519338 C a score=1563.0 s hg17.chr17_random 1689492 31 + 2618010 -AGGGAGGTGGCTGGGAGAGGGC-CTGGGTGCA s rn3.chr4 66315452 31 - 187371129 -CTGGGTGTGGTGTGCACAGGGC-CTGGGTGTA s canFam1.chrUn 82532050 29 - 91062872 -GGGGGGCTGGTGCAGGGAGGGC-C--AGTGCA s fr1.chrUn 328713302 31 + 349519338 -AGGAGCCCTAGAGGCAGGAGCC-CTACAGGCA s danRer1.chrNA 12616422 33 + 390413307 GGCGAGCACGGTAGGACTGGGGCTCTGGGGGCA a score=7208.0 s hg17.chr17_random 1689523 95 + 2618010 GGGGGCCTGGGTGCAG-------------------GGGCC-TGG-------GTGCAGGGGG-CCTGG-----------------------------GTGCAGGGGGCCTGGGTGCAG-------GGGGCCTGGGTGCAG--------GGGCCTGG-------GTGCAGGGGGCC s mm5.chr1 101552074 95 - 195203927 GGGGACTGGGGTCCAG-------------------GCAGC-TGC-------AGTCATGGGG-ACTGG-----------------------------GTCCAGGCAGCTGCAGTCATG-------GGGACTGGGGTCCAG--------GCAGCTGC-------AGTCATGGGGAC s rn3.chr4 66315512 161 - 187371129 CAGGGCCTGGGTGTAG-----TGTGCAC------CGGGCC-TGGGTGTGGTGTGCACAGGG-CCTGGGTGTGGTGTGCATTGGACCTGGGTGTGGTGTGCACAGGGCCTGGGTGTGGTGTGCACAGGGCCTGGGTGTAGTGTGCACCGGGCCTGGGTGTGGTGTGCACAGGGCC s canFam1.chrUn 82532079 97 - 91062872 GGGGGTCCGGGTGCAG-------------------GGGGCATGG-------GTGCAGGGGG-GCCTG-----------------------------GTGCAGGATGTGCAGGTGCAG-------GGGGTCCAGGTGCAGG-------GGATCCAG-------GTGCAGGGGGCG s fr1.chrUn 328713333 97 + 349519338 GGAGCCCTAGAGGCAG-------------------GAGCC-CTA-------GAGCAAGGAGCCCTAG-----------------------------AGGCAGGAGCCCTAGAGGCAG-------GAGCCCTAGAGGAAGG-------AGCCCTAG-------AGGCAGGAGCCC s danRer1.chrNA 12616455 106 + 390413307 GGAACTCTGGGGGCAGGAACAGGCGCTCTGGGTGCGGGCG-TGG-------GTGCAGGGGC-TCTGG-----------------------------GTGCTGGGGCTCTGGGTGCTG-------GGGCTCTAGGTGGTG-----------------------GTGCAGGCGCTC a score=-17874.0 s hg17.chr17_random 1689618 28 + 2618010 ------TGGGTGCAGGGGGCCTGGGTGCAG----------------------------------------------GGGC s mm5.chr1 101552169 28 - 195203927 ------TGGGTCCAGGCAGCTGCAGTCATG----------------------------------------------GGGA s rn3.chr4 66315673 43 - 187371129 ------TGGGTGTAGTGTGCATTGGACCTGG-GTGTGGTGTGC------------------------------ACAGGGC s canFam1.chr18 28691320 24 + 66173745 ------TCGGTGCTAACGGCCGTGG----G----------------------------------------------AGAA s fr1.chrUn 328713430 74 + 349519338 ------TAGAGGCAGGAGCCCTAGAGGAAGGAGCCCTACAGGCAGGAGCCCTAGAGGCAGGAGCCCTAGAGCAAGGAGCC s danRer1.chrNA 12616561 27 + 390413307 CGGGTGTGGGTGCGTGGGCTCCGGGGC----------------------------------------------------- a score=-7551.0 s hg17.chr17_random 1689646 44 + 2618010 -------CTGG-------GTGCAGGGGGCCT--GTGCAGAG-GTAGAGGA-----CTCAGGTGGAG s mm5.chr1 101552197 40 - 195203927 -------CTGG-------GTCCAGGCAGC-----TGCAGTC-AT-GGGGA-----CTGGGGTCCAG s rn3.chr4 66315716 54 - 187371129 -------CTGGGTGTGGTGTGCACAGGGCCTGGGTGTAGTGTGCACAGGG-----CCTGGGTGTAG s canFam1.chr18 28691344 31 + 66173745 -------ATGG-------CTGGGGGAGGC----------------AGGCG-----CCCAGGTGGAG s fr1.chrUn 328713504 40 + 349519338 -------CTAG-------AGGCAGGAGCCCT------AGAG-GCAGGAGC-----CCTAGAGGAAG s danRer1.chr8 15069711 48 + 36410523 GTTGGTGCTGG-------GTGTGTGGGTGAT-----------GTAGGTGGATTCTCCAAGATGCAG a score=-5164.0 s hg17.chr17_random 1689690 29 + 2618010 GTGGAAGGCAGCCCAGGT-----TGGGTAGGAAG s mm5.chr1 101552237 21 - 195203927 GCAG-CTGCAGTCATGG------------GGACT s canFam1.chr18 28691375 22 + 66173745 GAAA-GAGGAGCCCCCAT-----------AGAGG s fr1.chrUn 328713552 21 + 349519338 GAGG-CAGGAGCCCTAG------------AGGCA s danRer1.chr8 15069759 30 + 36410523 ---G-ATGGGGCTCAGCTGAATGTGGGTAAGAAG a score=-408.0 s hg17.chr17_random 1689719 24 + 2618010 GGGCTCCAGGAAGGGGCTGGCCTG--- s mm5.chr1 101552258 21 - 195203927 GGGGTCCAGGCAGCTGCAGTC------ s canFam1.chr18 28691397 24 + 66173745 CGGTTCCAGGTGGTGACCGAGCTG--- s fr1.chrUn 328713573 27 + 349519338 GGAGCCCTAGAGGAAGGAGCCCTACAG a score=0.0 s hg17.chr17_random 1689743 56 + 2618010 GTGGGGANGAGAAAGCAGGCGGCAGGCTTCTCTGCGACCTAAGTGCTTGATTCTCA a score=1177.0 s hg17.chr17_random 1689743 23 + 2618010 GTGGGGANGAGAAAGCAGGCGGC s mm5.chr1 101552279 23 - 195203927 ATGGGGACTGGGGTCCAGGCAGC s canFam1.chr18 28691421 20 + 66173745 ATGGGCA---GAGGGCAAGTAGG a score=-38.0 s hg17.chr17_random 1689766 18 + 2618010 AGGCTTCTCTGCGACCTA s canFam1.chr18 28691441 18 + 66173745 TGGGCACTCGCAGAGCCA a score=2853.0 s hg17.chr17_random 1689784 15 + 2618010 AGTGCTTGATTCTCA s panTro1.chr19_random 2670509 15 - 57627672 AGTGCTTGATTCTCA s canFam1.chr18 28691459 15 + 66173745 AATGCCTGCTCCTCG a score=6779.0 s hg17.chr17_random 1689799 20 + 2618010 GCAGG-AGCACAAAAGGCAAG s panTro1.chr19_random 2670524 21 - 57627672 GCAGGGAGCACAAAAGGCAAG s canFam1.chr18 28691474 21 + 66173745 GCAGCCAGCACAAGAGGCAGG s fr1.chrUn 328713600 20 + 349519338 GCAGG-AGCCCTAGAGGCAGG a score=8186.0 s hg17.chr17_random 1689819 67 + 2618010 GGCTAGAACTCACACTGCACCAGG-NCCCTGGGCAGGGAANGTCCATGGGG-AACTGAAGATCTGCACC s panTro1.chr19_random 2670545 66 - 57627672 GGCTAGAACTCACACTGCACCAGG--CCCTGGGCAGGGAA-GTCCATGGGGGAACTGAAGATCTGCGCC s canFam1.chr18 28691495 64 + 66173745 GGCTGGAACTCATTCTGCACCAGACCCCCTGGAACAGGAG----CAAGGTG-GACGGGCGGACAGCACC a score=48926.0 s hg17.chr17_random 1689886 542 + 2618010 TAGCCTCCTCTGAGCCTGCTGTCCACACCCCCACAGCCCCAGCTTCCAGCTGTTCCAATGACCGGAGAAGCAGAAGTTTCTGTAAGCCCNTCAAGTCTCCCCTGGTCCCCTTGGGGCTTTCAGGGAGATAATAGGATACACTTCTGGTNCCTGGAGGCGATTCCCAAGCATTTGCTTTAACTCTCAATATCACCTCCTCCCCAGACAGGGCTCCCAGAGCCAGGATGGAGGCAGGTGGTCCAGGGAGACTNCCTGCCCCGCTGCTCTCTCCCACCAGCCCCAAAGCAGAGGCTGCCCAGGGCCTGGGCGAGAGGAGAGCCTGGGGAGAGGCGGGCTGTCTGCCGGGGCTCTCACCCTTCCTGACTTGTCAGTTCTCTTGCCTTTGAGGCGGATGGAGCCCTCCTTCCCAGAGCAGTCCTGGCAGGGGAGGCGCCCACAGGAAGGAATGGAAACAGAGTCCATCCCTGGGGATCCCAAGTCATCCCCTGGGGCCACATGGACACCCATGCTGCCCAGCCTGGCAGCCAGTCCAGGGCCAGGGA s panTro1.chr19_random 2670611 539 - 57627672 TAGCCTCCTCTGAGCCTGCTGTCCACACCCCCACAGCCCCAGCTTCCAGCTGTTCCAATGACCGGAGGAGCAGAAGCTTCTGTAAGCCC-TCAAGTCTCCCCTGGTCCCCTTGGGGCTTTCAGGGAGATAATAGGATACCCTTCTGGTGC-TGGAGGCGATTCCCAAGCATTTGCTTTAACTCTCAATGTCACCTCCTCCCCAGACAGGGCTCCCAGAGCCAGGATGGAGGCAGGTGGTCCAGGGAGACT-CCTGTCCCGCTGCTCTCTCCCACCAGCCCCAAAGCAGAGGCCGCCCAGGGCCTGGGCGAGAGGAGAGCCTGGGGAGAGGCGGGCTGTCTGCCGGGGCTGTCACCCTTCCTGACTTGTCAGTTCTCTTGCCTTTGAGGCGGATGGAGCCGTCCTTCCCAGAGCAGTCCTGGCAGGGGAGGTGCCCACAGGAAGGAATGGAAACAGAGTCCATCCCTGGGGATCCCAAGTCATCCCCTGGGGCCACATGGACACCGATGCTGCCCAGCCTGGCAGCCAGTCCAGGGCCAGGGA a score=45164.0 s hg17.chr17_random 1690428 489 + 2618010 ACATAAACCCTTGAAGGAGAGGGGG--AGGAATTAGAGGGAGCAAAGACAGGGTCGGGAGATGTGATGAAAGAACCCAAGAGAAGCTCCAACCCCACTGCTCCCCTCCCCAGCACAGAAATCTTTAAGTGTCATGNCCTGAAACCCAGGCCGCCTTC-------TCTAGGTGCTGCTCTTGC-TCCTCCCCCATCCAGCCTAGATTCCACATCCCCCCAGAGGCTGAGCTGAAGGCGGTGCCCCCAGCAGCCCCACACTTCTCCACCACACCT--TGCAANGCCAAGCTCACAGGAGATTATTTCATTTTCATTTTAACTGGTCCTACCCAGCCCTGTCTGCAGCCGCCGGCTTAGAAGATGGAGACACGAGCGATCCACAGGCCGCCGAGTCC---GGAG--------GGCAGGGATCAGCCTCAGGGCAGCCACCCCTGCCTGCGCTCGAGCC------TCCTTGGCGCCCCGCACCCCTCCTCTGCC---------GCCGGCTAGGCGAAGGCGCTGCATCCTA s panTro1.chr19_random 2671150 488 - 57627672 ACATAAACCCTCGAAGGAGATGGGG--AGGAATTAGAGGGAGCAAAGACAGGGTTGGGAGATGTGATGAAACAACCCAAGAGAAGCTCCAACCCCACTGCTCCCCTCCCCAGCACAGAGATCTTTAAGTGTCATG-CCTGAAACCCAGGCCGCCTTC-------TCTAGGTGCTGCTCTTGCTTCCTCCCCCATCCAGCCTAGATTCCACATCCCCCCAGAGGCCGAGCTGAAGGCGGTGCCCCCGGCAGCCCCACACCTCTCCACCGCACCT--TGCAA-GCCAAGCTCACAGGAGGTTATTTCATTTTCATTTTAACTGGTCCTACCCAGCCCTGTCTGCAGCCGCCGGCTTAGAGGATGGAGACACGAGCGATCCACAGGCCGCCGAGTCC---GGAG--------GGCAGGGACCAGCCTCAGCGCAGCCACCCCTGCCTGGGCTCGAGCC------TCCTTGGCGCCCCGCACCCCTCCTCTGCC---------GCCGGCTAGGCGAAGGCACTGCGTCCCA s canFam1.chr18 28691564 409 + 66173745 ACCCAAACCCAAGGAGGAGAGGTGACCAGGGAC---AGGGAGTAAAGACAGGGCGGGGAGAAGGGCC--AGGAACCC-AGAGAGCCCCC----------------------------AGATCCTTCAGGG------CCAGGAACCCAGAGAGCCCCCAGATCCTGCAGGGTGACGCCGTCACACCCCACCCC-------------CCCACACTCCC----ATGCTGGGC---ACCCGGCGCCC----CAGCTCTGCACAGCCTCCCCAGGAGTGGCGCAG-GCC---CCCACAAGAG---AGGTTATTTTCACTTTGCTGCGCGGTGCACAG------CTGCGG-CGCTCACTTCGATGGGGGAG------------CGTAGGCCATGGGGTCCCTGGGAGCAGATCGAGGCAGGGAT--------GAGCAGC--------CCTGTGCTCCCCCCCCCCAATCCCAGGCGAGCTG---CCCTGCACTGCCAGGCCTTGGGGCACCCGGGCGAGAGCCA--------- a score=27903.0 s hg17.chr17_random 1690917 160 + 2618010 GCCCCACCGATAGGCCCAGCCTGGT---TTTGTTTT----GACCCGAGCTGAGTGGGAGATAACTTA---ACAGCTTGTCCCCGATTGTAATGGCATGTTTTTCCCCACTCCGCAGTGGGAAACA----CCATCCATCATCCATAGCGCAGAACAC-----------------GGGCCTATGGCC---------------------CCCTCC- s panTro1.chr19_random 2671638 164 - 57627672 GCCCCACCAATAGGCCCAGCCTGGT---TTTATTTTCCTCGACCCGAGCTGAGTGGGAGATAACTTA---ACAGCTTGTCCCCGATTGTAATGGCATGTTTTTCCCCACTCCACAGTGGGAAACA----CCATCCATCACCCATAGCGCAGAACAC-----------------GGGCCTGTGGCC---------------------CCCTCC- s mm5.chr11 118483415 186 + 121648857 GTCCCACCAAAAGCCTCAGGCCGGTTTGTTTGCTTT----GACCCAGGTTGGGTGGGAGAAAACTGAGCGGCAGCCGATCCTCCACCACGGGGGC-TCATTTCCTTCGCTCTGCAGTGCGAAGTGCCATCCATCCATCATCCACTGCACAGAATATCCCAGAACACAGGCTGGAGGCCTAAGGCC---------------------CCAGCC- s canFam1.chr18 28691973 173 + 66173745 GCCTCACCA-------CTGGCCGGC---TGCCCTTT------ATCGCCTTAAATGAGAGGTCATGTC---CCAGCTTGGCCGGGATTGCAAGCACATGTTTGCTCCTACTCTGCAGGAGGAAACA----CCAGCCACCACCCACAGGACAGAACCG-----------------GGGCCCCTGCCCAGGGGTTTTCAACAAACAGGACTCACCC a score=5534.0 s hg17.chr17_random 1691077 87 + 2618010 -------GCGTGCGCTCCTGT-------------ACCCCACGCCCCACCCCTTGG-----------------TGCTGCGGGGTTTAGGGGACCTCNAGGGCTCGCCCC---------AGGCTTGTGGCTGGCA--- s panTro1.chr19_random 2671802 86 - 57627672 -------GCGTGCGCTCCTGC-------------ACCCCACGCCCCACCCCTTGG-----------------TGCCGCGGGATTTAGGGGACCTC-AGGGCTCTCCCC---------AAGCTCGTGGCTGGCA--- s canFam1.chr18 28692146 135 + 66173745 CAGTGCAGACTGGCCTCCAGCTGCCNNNGGGGGAAACCCCCGCCCCCCCCCCCGGGAAAGACGGGGGGCCCTTCCCCGGGGTTTTTTTGGGCCCC-GGGTTTCCCCCCGTGGAGGCTGGGCTCCCGGTTTCCCGGG a score=208.0 s hg17.chr17_random 1691164 80 + 2618010 GAAGGAGTGGAACCAC----------------------GNGTGGGAGGCAAAAGGCCCAGTGACCAAGTACCCTTGACGGCTCTCTAGGCCCCGCAGCCCGG s canFam1.chr18 28692281 93 + 66173745 GGGGGGGTGGTTCCCCCTTTTTTTTTCCCGGATTGTTAAGGTTAGGGGGAAAAGGCCCAACCAATTAGGTGTTTTGGGGGTTTTTAAGGCCCC--------- a score=310.0 s hg17.chr17_random 1691235 9 + 2618010 GCAGCCCGG s mm5.chr11 118483701 9 + 121648857 GGAGCGTGG a score=1665.0 s hg17.chr17_random 1691244 8 + 2618010 CAGGGTTG s mm5.chr11 118483710 8 + 121648857 CAGGGTGG s canFam1.chr18 28692374 8 + 66173745 CGGGGTTG a score=11.0 s hg17.chr17_random 1691252 60 + 2618010 ----GGAGCGTAGTTGGGGGCTGGGCTGGGCTGCAGGTGGCTTCTCAGGGCGCAGTGGCAGGGA s mm5.chr11 118483718 56 + 121648857 AGGAGGAGAGGAGCC-AGGCCAGGGCTGGCTGAAAGATGG-------GAAAGAGGAGATAGATA a score=-4104.0 s hg17.chr17_random 1691312 258 + 2618010 CNCAGGGTGGGCGNGGGCCT--GGTCGAGGCCACAGCCTACCATTCCCCCACTTCCTGGGGACAAAAGGGTCCAGTCTGTCTC--------------------GGGAGTGAG-CTGTGTCCTCCTCATTCTCCGACCTGTATTTATTGC-CCCTCACCATGCGCT---------GAGTGCAGTGC---------------TCAGAGCACAGCA-------------------NAGCACACAGGGACACCCCACTGTTGACCTTCAAGGGG----AAAAGCCCCTGCAGNCTCCTCAACTCCCCTTCTTCTGNGGAGGTCAGTTNGGGGA s mm5.chr11 118483774 295 + 121648857 CCTACCCTTTGCAGGGCCCCAGGGTCAAGATCACAGTCTGCTACTCC------TGTTGTCAGCAACAGGCTCTCATTTGT-----------------------GAGGGTGGGACTGAGTTTTCCTCGCTCTCAGAAGCATAGTTACTGTGCCCCCATTGTGTACTGTGTGTGCAGAGTGTAGTACCATGTCCCCAAA---TTTGAGCTGGGCAAGCTTATGTTCCGGCTGAGGAATACACATGGCATGTCTAAACCTGCCCCCCAAAATGGTCTGCTAGCAACCTCAGCCTCCTCCTCTCTGCAGCTGCAGGGAGGACAAGT--GGGAA s canFam1.chr18 28692450 269 + 66173745 CCCAATTT------GGGCCCCGGGTTAAGGCCATTGCCTGTTTTTCC---AAATTCCACCGGGGGAGGGGTTTGGTTCCTTTCCCACACCCTTCCCCCTTGTGGGGATTCAATTTGGGGGGGTTTCTTTcccccccccccccccccccc-ccccccccccGCACC---------AAGCACAGTGCTGCGGTCCCAGACTGTCAGTGCCCAGCC----------CAGGGCCAGAGGCAGGCAGGGAGCCTCCACGACTGGCATCTACG-----------------------TCCACGTCCTTCTTGCTGCAGG------CGGT--GGGGA a score=0.0 s hg17.chr17_random 1691570 22 + 2618010 ATTCTGAGATCCCNANTCCTGT a score=373.0 s hg17.chr17_random 1691570 4 + 2618010 ATTC s mm5.chr11 118484069 4 + 121648857 ATTC a score=1732.0 s hg17.chr17_random 1691574 18 + 2618010 TGAGATCCCNANTCCTGT s panTro1.chr19 78578368 16 + 82489036 TGAGATCCCA--TCCTGT s mm5.chr11 118484073 16 + 121648857 TGAGTTCCCA--CGATGT a score=5405.0 s hg17.chr17_random 1691592 56 + 2618010 CCCCTACACACACATATGCGTG-------------NCACATATGCTCACATATGCACACGAGCACAGAC s panTro1.chr19 78578384 55 + 82489036 CCCTTACACACACATATGTG-G-------------GCACATATGCTCACATATGCACATGAGCACAGCG s mm5.chr11 118484089 69 + 121648857 CCCCTATACATGTATGTGCATGTACACACATACATACACACACACACACACACACACACGAACACAGAC s canFam1.chr18 28692719 45 + 66173745 CCCCCACAC-------TGAG-G-------------AAGCCCAGGGACA---GTGGACACAAGGGTTGGC a score=61077.0 s hg17.chr17_random 1691648 479 + 2618010 GGGCCNTCCTGGACCCT-----ACCNTCCNCNTGCTTCNTCANGATNTAATCCTCTNGCTNTAATGACAGGG--CCCCCANATNATNNAGGAGTCCAGGGAGAGGCTTAAGCATCCCCAGAAGNCTGGCTATGGGTGGCAGGGCCCCCAGAAGAGCTGGGAAGCATG-----AGGAGTGTNCTACAAAGGGNGAGGGCTGTGCCCTGGGGCTTGNAGGGGGGNCTCAGTCTCAGAGAAGGATTTTAAAGACTCCTGTGCCCGCATCTGCAGCTGGCCAGTTTCCTCTTCGCAGCTCTCAGCCTGGCTGNTTCAACCTGCTGCAGAACCAGCCAGCACTGCTCCCGAGGCAG-CACGAGACTGGGGCAGCCCCTGGTGCTCTGGCCCCAA--------AAGGTCTCCT-CTCAGATTCTTGTCATTGGAAAGAGAAGATAGAAAAACANACATCTGGACTGCTATAAAGTGTCCTCTATCAAAA------------AATAAGCAGATACACAAA s panTro1.chr19 78578439 479 + 82489036 GGGCCATCCTGGACCCT-----CCCCTCCACCTGCTTCCTCAGGATCTAATCCTCTTGCTTTAATGACAGGG--CCCCCAAATAATAAAGGAGTCCAGGGAGAGGCTTAAGCATCCCCAGAAGGCTGGCTATGGGTGGCAGGGCCCCCAGAAGAGCTGGGAAGCATG-----AGGAGTGTCCTACAAAGGGTGAGGGCTGTGCCCTGGGGCTTGGAGGGGGGCCTCAGTCTCAGAGAAGGATTTTAAAGACTCCTGTGCCCGCATCTGCAGCTGGCCAGTTTCCTCTTCGCAGCTCTCAGCCTGGCTGCTTCGGCCTGCTGCAGAACCAGCCAGCACTGCTCCCAAGGCAG-CACAAGACTGGGGCAGCCCCTGGTGCTCTGGCCCCAA--------AAGGCCTCCT-CTCAGATTCTTGTCATTGGAAAGAGAAGATAGAAAAACAAACATTTGGACTGCTATAAAGTGTCTTCTACCAAAA------------AATAAGCAGATACACAAA s canFam1.chr18 28692764 459 + 66173745 -TGGCAGCCAGGACCCTCCCGACCCCTCAACCTGCTTCTTCAGGATCCAACCCCCTGGCTTTAGTAGGGGGAGCCCTCAAAATAATCTGCAGGT--GGGCAGAGGCTTCAGTTTCCCAGGAAGGCTGGACATAGGTGGTGGGGGTCCCAGGAG-GATGAAGGACATGCTCCCAGGGAAGGCCTACCACGGGCAAGGGCAGGGAGC--GGGCTGGGAGAGG----CCAGTCTCAGGGCAGGTCTCT--------------------------CCAGCCCATTCTCACCCCTC--CTCCCATCCCAGCTGC------------CAGTTCAAGTCTCCAAGG--CCCATGGCAGCCACGGAGCCGGCCCAGCTCCC--TGTTTTGTTCCCAAGGGGGCAGAAGGCCTCCTGTTGGGATTCCTGCCATTAGGGAGAGAAGATAGAAACATAAACACTGGGACTTCTAGAAAGTGTCTTCAGCAAAAAAGTCATAATAATAATAAGCCAACACACAAA a score=37927.0 s hg17.chr17_random 1692127 432 + 2618010 gggagagggaggtagcagaaggagtgagagagaccgagggagggaangaggagggaaggaagCCTCTGGGGATGAGGCATGTTCACCCAGCCTGGACAGGGGAAGATTGAGGAGGGCCATGGCAGAGGTGTGGGTGAGGCACACAAGGTAGCTGGAGCAGAAGCCACAGGCAGATAGCCCAGGTGAGATGCACTGGCCAGGCAGAGAGGAGGCTAGGATGGCAGGCCCTGGGCAAGGGCAGAGAAGGCA-GAAGTCAGATGACCTGCCCTGGCTGGCCCCGACGACCTTGGACTCACGAGTTGCCTTTGGTCAGAAG-CGTGGACTTGTGTTGACAAAGATGCTGCAGAGGCCGGGTGGCGGGGA-GGCCAGAAGCAAGGGACACGCACAGCTAGGAAAGAATGTGCTGAGATGGGGGAGAGGAGAGCCTGGCCG s panTro1.chr19 78578918 432 + 82489036 GGGAGAGGGAGGTAGCAAAAGGAGTGAGAGTGACCGAGGGAGGGAA-GAGGAGGGAAGGAAGCCTCTGGGGATGAGGCATGTTCACCCAGCCTGGACAGGGGAAGATTGAGGAGGGCCATGGCAGAGGTGTGGGTGAGGCACACAAGGTAGCTGGAGCAGAAGCCACAGGCAGATAGCCCAGGTGAGATGCACTGGCCAGGCAGAGAGGAGGCTAGGATGGCAGGCCCTGGGGAAGGGCAGAGAAGGCATGAAGTCAGATGACCTGCCCTGGCTGGCCCTGACGACCTTGGACTCACGAGTTGCCTTTGGTCAGAAGGCGTGGACTTGTGTTGACAAAGATGCTGCAGAGGCCAGG--GCGGGGGCAGCCAGAAGCAAGGGACAAGCACAGCTAGGAAAGAATGTGCTGAGATGGGGGAGAGGAGAGCCTGGCCG a score=22873.0 s hg17.chr17_random 1692559 167 + 2618010 AATCACCATCATCATCCTCGTCCTCAGC-----------------------TCCCCgtcagtg---------------tttgctcactatcgtgcccca-gcgcctggccaatgctggcacacagtaggcgctcagcagttttggtgaaatgaacgCTGCAAAGAAGG--AAGTCAA-TCTGGGTGAGTGGCATGGAGCTGGGTAACGT s panTro1.chr19 78579350 167 + 82489036 AATCACCATCCTCATCCTCGTCCTCAGC-----------------------CCCCCGTCAGTG---------------Tttgctcactatcgtgcccca-gcgcctggccaatgctggcacacagtaggcgctcagcagttttggtgaaattaatgGTGCAAAGAAGG--AAGTCAA-TCTGGGTGAGTGGCATGGAGCTGGGTAACGT s canFam1.chr18 28693549 209 + 66173745 catcaccatcatcatcatcatcatcaccatcatcaAAACAGGACAAAGCTTATCccgtgagggcagatccaggctggtccctctcagcaccgtgccccctgcccctggccagggctggcacacagcaggtgctcagcagcacctgctcaacgaacaaGGGAAGGAAGGACAAGCCAAGTGTAGGTGAGCCCTGCACAGGTGAGGAACAT a score=23304.0 s hg17.chr17_random 1692726 289 + 2618010 TTCTGATGAAaattc-------------cagcactttgggacgctgaggtgggtggatcacgaggtcanggagtttgagaccatcctggctagcactgtgaaaccctgtctttactaaaaatacaaaaaattagccaggtgtggtggcaggcgcctgtagtcccagctgcttggagaggctgaggcaggagaatggtgtgaacccanggnaggcggagcttgcagtgagccgagatcgctccactgcactccagcctgggtgacagagcaagaccccatctcagaaaaaaaaaaaaaaaaaa s panTro1.chr19 78579517 295 + 82489036 TTTTGATGAAAATTCTTGGctgtaattccagcactttgggacgctgaggtgggtcgatcacgaggtca-ggagttcgagaccatcctggctagcactgtgaaaccctgtctctattaaaaatacaaaacattagccaggtgtggtggcaggagcctgtagtcccagctgcttggagaggctgaggcaggagaatggtgtgaacccagg--aggcggagcttgcggtgagccgagatcgctccactgcactccagcctgggtgacagagcaagaccccatctcagaaaaaaaaaaaaaa---- a score=14742.0 s hg17.chr17_random 1693015 170 + 2618010 TTCCTGGGTGACCTGAACACCAACAAATGGNGATAAAGAAGTTGTCACTGATTTGCATCTGACGACGGGATGGTCTTCAGGCTCCTAGAGGTGGGGGTGAGGTGGAATGAACTTCCCATTNCTACATGGCAAAGCAAATGAACTCAGCCCACCTAAAACACAGGCACCCN s panTro1.chr19 78579812 168 + 82489036 TTCCTGGGTGACCTGAACACCAACAAATGGGGATCAAGAAGTTGTCACTGATTTGCATCTGACGACGGGATGGTCTTCAGGCTCCTAGAGGTGGGGGTGAGGTGGAATGAACTTCCCATT-CTACATGGCAAAGCAAATGAACTGAGCCCACCTAAAACCCAGGCACCC- s canFam1.chr18 28693758 121 + 66173745 TTCCTAGGTGACCTGACAGGTACTGAGTGACCATAA-----CCCCCGCTCATGTGGGTCTGCTGATG----------------CCCAGAGGTGGGGGGAAGGCCAAAT-ACTGTCGCGTC-CCCCAGGTGAACAC-------CTGAGCCCG------------------- a score=34746.0 s hg17.chr17_random 1693185 201 + 2618010 CAAGACCC--TCACACTCACAGC--CTCC-TGTGCAGAGAGAGGACAAACAGCCAAGCATACATCCTGGATTT---TTTTCCGCAGATCTCCAAATAGAAGGCCACACTTGNGACTTCAGCATGCAAGGACAGGCTGGGGACATCACCAGTCCCTTATAAATTAANGGCTCATCTGAGGACATGGCTTCATTTATAGGATTTAAGATGA s panTro1.chr19 78579980 201 + 82489036 CAAGACCC--TCACACTCACAGC--CTCC-TGTGCAGAGAGAGGACCAACAGCCAAGCATACATCCTGGATTTCTTTTTTCC-CAGATCTCCAAATAGAAGGCCACACTTG-GACTTCAGCATGCAAGGACAGGCTGGAGACATCACTAGTCCTTTATAAATTAA-GGCTCATCTGAGGACATGGCTTCATTTATAGGATTTAAGATGA s mm5.chr11 118484284 185 + 121648857 CAAGACTTTGTAACACTCTCAGCAACTCC-TGTGGAGA---AAGCCCTGCAGCAAAGACTATGGC--AGACTT--------------TCCCCAA--AGTCGTCCCCCCCAA-AACTACA-CATGGCTGGGTGGTCTGGGGACACCACTAACTCTTTATAAATAATTATCTAACCTGAGAAAATGGCTTTATTTATAGGATTCCAAATGA s canFam1.chr18 28693879 195 + 66173745 CCAGACAC--CCACATGCACGGC--TTCCGGGTGGAGA-GGGGTCCCGGCCACAAAGCGTCCACTCTGGCTTG---TTTTCCACA--TCTCTGAAGAGAAAGGCACACCTG-GACCTGAGGACACCTGGGCAGGCCAGGGATGGCAATCGTCCCTTCCAAGCA---GGGTCATCTGAGGAAGTGGCTTCATGTACAGGATGCAAGACAT a score=8636.0 s hg17.chr17_random 1693386 79 + 2618010 GGCATCACAGAGAGGCAGAAGTGGCCGGTGAGTTGAGGCGGAGCCCCNCCNANTTTNCNACNTACCCCCTCCCCGGGCC s panTro1.chr19 78580181 74 + 82489036 GGCATCACAGAGAGGCAGAAGTGGCCGGTGAGTTGAGGCGGAGCCCCCC---ATTTC--ATCCACCCCCTCCCCGGGCC s canFam1.chr18 28694074 63 + 66173745 GGTAACACAGAAAAGCAGAGACAACCCGC---------CAGCACCCCTC---ATTTT----ACGCCCCCTCCCTGGGCC a score=62976.0 s hg17.chr17_random 1693465 701 + 2618010 NTACTGACAGCAGCACATGGGGGAATGAGACAATGGTCCCCCTCTGGGCAGATGCAGCCTTGCCAGTGCAGGACTTGAATTCTGAGGCTGTTCGTCTTCTCAGAGCATGCTACACTCCATTCTCTGCAACAGCCTGATTGGCATGCCTTGGAACATTCCAGgccatggcaagggaaaagcttggagcaggacccgcaggcctgggttctcctcccagcccatcactgtgtgacctgggacatctgaacatccctgatcctttccgcatcAACTCACAGGAAGTGTCTACTATGTGGCAGATGCAGACCCAGGTTCCGGACANTTCAACAAGGTACACTAGCAACCCCATCCCTGCCCAAAGTGTCTTGGATGTCACCTTCCCTGCCCCCTGTATGAGGCACACAGAAAGAAGACAGAAAGGGCTTTGCACTAAATCACAGCTGCGCTTTCTCCTAATACTCCGAGGAGTCAAATGACCTCTGAAGGCCACCAGAGCCACAGGCCTCTTTGTGATGGTCACACATGGGCTTGTGAAAGAGCCATTTAGGGACATAGCATAGGGGACTCTGAGACNCAGGGGCTCCAAAGGAAGGACCCTAAAATCACCAGAAATCAAGTTTGGGTTTTTATAGCATTTTGCTTATCtttt----------------------gttttgttttgttttgttttTTAACAAAGATAGCAATATCACCAGAAATATG s panTro1.chr19 78580255 720 + 82489036 -TACTGACAGCAGCACATGGGGGAATGAGACAGTGGTCCCCCTCTGGGCAGATGCAGCCCTGCCAGTGCAGGACTTGAATTCTGAGGCTGTTCGTCTTCTCAGAGCATGCTACACTCCATTCTCTGCAACAGCCTGATTGGCATGCCTTGGAACATTCCAGGCCATGGCAAGGGAAAAGCTTGAAGCAGGACCCGCAGGCCTGGGTTCTCCTCCCAGCCCATCACTGTGTGAGCTGGGATATCTGAACATCCCTGATCCTCTCCCCGTCAACTCACAGGAAGTGTCTACTACGTGGCAGATGCAGACCCAGGTTCCGGGCA-TTCAACAAGGTACACTAGCAACCCCATCCCTGCCCAAAGTGTCTTGGATGTCACCTTCCCTGCCCCCTGTATGAGGCACACAGAAAGAAGACAGAAAGGGCTTTGCACTAAATCACAGCTGCGCTTTCTCCTAATACTCCAAGGAGTCAAATGACCTCTGAAGGTCACCAGAGCCACAGGCCTCTTTGTGATGGTCACACATGGGCTTGTGAAAGAGCCATTTAGGGACATAGCATAGGGGACTCTGAGAC-CAGGGGCTCCAAAGGAAGGACCCTAAAATCACCAGAAATCAAGTTTGGGTTTTTATAGCATTTTGCTTATCttttcttttgttttttgttttgttttgttttgttttgttttgttttTTAACAAAGATAGCAATATCACCAGAAATATG a score=29887.0 s hg17.chr17_random 1694166 180 + 2618010 CTTGCATTCTTATTTGGCTTCCTGGAGGGACTCAGAAAATGGCATTTGCAAAATCTCAGAGGACTCCACTCGCACATTTTAGATTTTACTTTTCTCCCCAAACTACGCCTTTGCTGGTTCATTTTATTGCAGAGAGCGGAACTTTTTAGCCTTCTAGTCCTGCCAGAA--AGttaaaaaaaa s panTro1.chr19 78580975 180 + 82489036 CCTGCATTCTTATTTGGCTTCCTGGAGGGACTCAGAAAATGGCATTTGCAAAATCTCAGAGGACTCCACTCACACATTTTAGATTTTACTTTTCTCCCCAAACTACACCTTTGCTGGTTCATTTTATTGTAGAGAGTGGAACTTTTTAGCCTTCTAGTCCTTCCAGAA--AGTTaaaaaaaa s canFam1.chr18 28694202 178 + 66173745 CTAACATTCTGGTTCAAA-TCCCAGAGGGACTCAGGAAATGGCATCAGC-AAATCCCAGGGGACTCAACCCGCCCATCTAGGATGGGGCCTTTCTCCCCAAACCACACCTTTGCTGGTTCATTTCACTTCCCAGA--GGAAGTTTTTCTGCGACTGGCTCTCCTGGCAGGAGCTAAAGGAAA a score=45500.0 s hg17.chr17_random 1694346 534 + 2618010 aaaaaaaaaaa-GAATCAGAGTAATGGCAAGGATTTAACAttcttcatttattttattttttgagacnagggtctcactctgtcacccaggctggagtgcagtgacttgaacacagctcactgcagcctccaccgcccaggctcaaacaatcctcctgcctcagtcccccaagtagctgggactacaggtgtgcgccaccatgcctggctaatttttgcattttttgtagagatgggctttcaccatggtgcccaacctggtctcggactcctgagctcaagcgatccacccnanccnttnggcctnccagagtgctgggattacaggtgtgaggcactgcacctggtcCAACATTCATTTTTTTAAAACCATNGGAATTCTCCAAAGGTACTAGAGCTGTGCACCCTCCCAACTGCAGCATTTCCTCAGGGTATGCAGCCCTCTNGGAGCTTGCCCNGGGGTGCAGTTCCTCAAGGCACTGTTCTCTTTCCTTCTGTTTTTCTTACACNTAGCTTCTCCCTGGGTGCCAGTGGT s panTro1.chr19 78581155 527 + 82489036 aaaaaaaaaaaagaaTCAGAGTAATGGCAAGGATTTAACAttctttatttattttattttttgagac-agggtctcactctgtcacccaggctggagtgcagtgacttgaacatggctcactgcagcctccaccacccaggctcaagcaatcctcctgcctcagtcccccgagtagctgggactacaggtgtgcgccaccatgcctggctaatttttgcattttttgtagagatgggctttcaccatggtgcccaacctggtctcggactcctgagctcaagcgatccaccca---cctttggcctcccagagtgctgggattacaggtgtgaggcactgcacctggtcCAACATTCATTTTTTTAAAACCAT-GGAATTCTCCAAAGGTACTAGAGCTGTGCACCCTCCCAACTGCAGCATTTCCTCAGGGTATGCAGCCCTCT-GGAGCTTGCCC-GGGGTGCAGTTCCTCAAGGCACTGTTCTCTTTCCTTCTGTTTTTCTTACAC-TAGCTTCTCCCTGGGTGCCAGTAGT a score=14020.0 s hg17.chr17_random 1694880 114 + 2618010 TCTACTTCT---GCCATCTTTTCTGGTTAATCCCTCTCATACCTTTCAGGGCTGCTGGCTTTGCTCTCTTCCATTTTCCATCACCCCAATTCCTCCTCAGCCTCTGTACCCCCCAAA s panTro1.chr19 78581682 114 + 82489036 TCTACTTCT---GCCATCTTTTCTGGTTAATCCCTCTCATACCTTTCAGGGCTGCTGGCTTTGCTCTCTCCCATTTTCCATCACCCCAATTCCTCCTCAGCCTCTGCACCCCACAAA s canFam1.chr18 28695049 114 + 66173745 TCTCCCTCTGAAGCCACCCCGCCTCCCCCATCCTCCAGGCACCGTTCCAGG-TGCTGGCGTGCACCTGTCCCATTTCTCCCTTCCCCGATTCCT-CTTGGTCTTTGCTCCCCCACA- a score=192855.0 s hg17.chr17_random 1694994 698 + 2618010 ACATAAGCTCCTAACCAAAATCAGAGTTTAAAATAGGACTCAAACTAAGAAAGCAAAATTTGCTCTTTCTTTAACCAAGAGAAAA--ACAACACAGAGCACCTCATTTTAGTAGTAAAGATTATAGGGAATATACAATATTCAGAATAAATGAA---------CCTCCTCCCCCTGTTTTTAAACCACTCTTGTGAAACCAGCTTAATTCCTGGCTCCCCTCATGCCTTCTGAATCCTGTCTCTGGC------------------------------------------------AAAAATAATTTGGGTTTTATTCTTCTGGCATCTGGTGGGAGTCGGTGACAATTTTACTGTAGCTA---------TACTTCTTC-TTTTTTAATACCAGTGTGTTTTAATAATACAGTGTACCTTTTGGTATTNGTTGAAATGTTACATTATTCAACGTATCCAACGGGAAAGGGAAAGGCCTTCTGTAATTTATGTGTCCTCGGTGCTGTGTTTAAAGCTTGCAAAGTGGAGGGCTGTAATTTGGGAAGCAATTTTCCCCAAGGTCGGGAGAATGGTTTCTGGAGGAGAGGCT-GGAGACTGCCTGACCCGGGTT-CAGTGGGGCT------GGGGGCCC----------------------------A-GAACCCTGGCC---ATGAGGCTGA-------------TCCTAGTGGTAGGGAGT-ACCGTGGGCTCAAAATCAGAAATGTTCCCCA-AAATACAGCAACAACAACAAATC--CTCAGCCTGGCTATGGCTGGCTTG--CTGGGCCACTTGGGTTTCAAGCA s panTro1.chr19 78581796 696 + 82489036 ACATAAGCTCCTACTCAAAATCAGAGTTTAAAATGGGACTCAAACTAAGAACGCAAAATTTACTCTTTCTTTAACCAAGAGAAAA--ACAACACAGAGCACCTCATTTTAGTAATAAAGATTATAGGGAATATACAATATTCAGAATAAATGAA---------CCTCCTCCCCCTGTTTTTAAACCAGTCTTGTGAAACCATCTTAATTCCTGGCTCCCCTCATGCCTTCTGAATCCTGTCTCCAGC------------------------------------------------AAAAATAATTTGGGTTTTATTCTTCTGGCATCTGGTGGGAGTCGGTGACAATTTTACTGTAGCTA---------TACTTCTTC-TTTTTTAATACCAGTGTGTTTTAATAATACAGTGTACCTTTTGGTATT-GTTGAAATGTTACATTATTCAATGTATCCAATGGGAAAGGGAAGGGCCTTCTGTAATTTATGTGTCCTCGGTGCTGTGTTTAAAGCTTGCAAAGTGGAGGGCTGTAATTTGGGAAGCAATTTTCCCCAAGGTCAGGAGAATGGTTTCTGGAGGAGAGGCT-GGAGACTGCCTGACCCAGGTT-CAGT-GGGCT------GGGGGCCC----------------------------A-GAACCCTGGCC---ATGAGGCTGA-------------TCCTAGTGGTAGGGAGT-ACCGTGGGCTCAAAATCAGAAATGTTCCCCA-AAATACAGCAGCAACAACAAATC--CTCAGCCTGGCTATAGCTGGCTTG--CTGGGCCACTTGGGTTTCAAGCA s mm5.chr11 118485034 683 + 121648857 ACACAGACTAAGGACCAACAGGAGCATTTAAGATGAGGCCTGAACCCAGAAAGCACAACTCACTGTGCCTCTAACCCAGAGGGAAGCACGGCACAGCATGCCATATTTCAGTAGTAAAGA-TACAGGGAA-ATGCAATATTCCAAGAAAATGAGCTGCCGCCTCCTCCTCCTCCCGTTTTTAAATGGCTCTTGCGGAGCTGCCTTCACCCTTCACTCCCCTCGTGCCTTATGGATCCTGTCCCC---------------------------------------------------------------GGGTTCATTATTCTGACGTGTGGTGGGAGTC--TGACAGTGTTACTGCGGCTC---------CACTTCTTC---CTTTAATGCCAGCCTGTTTTAATAATACAGTGTACCTTTTGGT-TT-GGTGAAATGTGACATTATTCCAGGCACCCAGCGGCAATGAGAAGGGCCTTATGTAATTTATGTGTTCTCCGCGCTGTGTTTAACACTCCCAAAGCGGAGGGCTGTAATTTGGGAAGCGATTCTCCCCAAGGTCAGGGGAACAGTTTGTAGAGGGAAGGCTGGGGGGCTGTCTGACCTGAGCT-CAGC----CC------AGGAGCCC----------------------------AGGAGCTCCAGCT---ATGAGGCTGG-------------ACCCAGCAGCA-GGAGA-ACTCTGCACCTTAAATCATAAATGGCCCAGATAAAAACAAAAACAAAAACGCCCCAGCCCAGCCCAGCTACGGCCGAGTCA--CCAGGCTTCT---GGTTTAAGCA s canFam1.chr18 28695163 788 + 66173745 ACCCAAGCCAATAACCAGACCCAGAGCTTGACATAAGGCTCATGCTAAGAAAGCAAAACTTGCCACCTCTTTAGCCAGGAGAAGG--ATAATATGG-GCGCTTCACTGCAACAGTAAAGGTTATAGGAAATACATAATATTCAGAATAAATGAG---------TCTCCTCCTTCCGTTTTTAAACCA-------GAAACCAGCTTCATTCCTGACTCCCCTCATGCCTTGTGAATCCTGTCTCTGGCaaataaataaataaataaataaataaataaataaataaataaataaataaataTAATTTGGGTTTTATTATTCTGGCATCTAGTGGGAGTCTGTGACAATGTTACTGTAGCCAAGCTGCTCCTGCTTCTTCCTTTTTTAACACCAGTGAGTTTTAATAATACAGTGTACCTTTAGGTATT-GTTGGAATGTTACATTATTCATTGCATCCAACGGGAATGAGAAGGCCCTTATGCAATTTATGTGTCCTCCGCGCTGTGTTTAAAGCTCGGGAAATGGAGGGGTGTAATTTGGGAAGCAATTTTCCCCAGGATGGGGAAAGCAGTTTCTGGAGGAAAGGCT-GGGGGCTGTGTGACCCTCGTGACAGCCAGGCTTACAGGGGGAGCCCCAGGCCAGAAGTGTCCCCCAAATGCGGGA-GAACTCCAGCCCAGCTGTGGCTGGGGTGCACACAACCGCCTGGTGAGGAGGAGTCACCCAGGGCACGA---TCCAAAGCTTCCCCA--------GGCTCTCCAGCGCATT--TTCCATGCTTCCCTCACCGAATCACCCTGGGTCCCT---GAGTCTAGGA a score=21251.0 s hg17.chr17_random 1695692 325 + 2618010 ACTCATTTAGT----------TTCCAGTTTCTGGCCCTTCCAGAGAGCATCA-----------------CTGCTGTGCTAAACATCCAT-GAGTCCCTCCTGCA-TGGATACTGGGG-CACAGCTGGGAACACCACAGGCACCTG---TTGAGGGGCCTGCAGTGTagagagagaga-gagagagagagagaACAGGTAAACCACAA--CCCCAGAGGCAGGGtatgggctcctacaagatggcaagctctagaagg--ttggggccttatttttctcagcaccacagctaagcc------atcgagaatggtgcctggcacaccccaggtgctaaacaaacatgcttgag----tgagtgcatGAAAGAGTG s panTro1.chr19 78582492 239 + 82489036 ACTCATTTAG-----------TTCCAGTTTCTGGCCCTTCCAGAGAACATCA-----------------CTGCTGTGCTAAACATCCAT-GAATCCCTCCTGCA-TGGATACTGGGG-CACAGCTGGGAACACCACAGGCACCTG---TTGAGGGGCCT---------------------------------------------------------------------------------------gctctagaagg--atggggccttatttttctcagcaccacagctaa-cc------atcgagaatggtgcctggcacaccccaggtgctaagcaaacatgcttgag----tgagtgcatgaaAGAGTG s canFam1.chr18 28695951 338 + 66173745 -ATCAATGACCAGGACCGAGAGCCCTGCTTCGGGCACT--CAGGGAACTTGAGGCCAGCAGGCCCTTTCCAGAAGCACTGAACATTCATCAAGACCCTCCCACACTAGATGCCGGGGACACAGATGAGAACACCACGCGGGCCTGTCCTCCAGCGGGCCGCTGTGCAGAGGGACAGATGACAGCGC-------------AACCAGAGGTCCCATGAGACATGGGAGAAGGGCCTGCATGA------GACGTAGAGGGCCACGGGGC-------------AGATCTGAGTTGTGCCCGGTGGgtctagaacggtgcctggcacacaacaggtgctcgggaaacacgtgtgaggggctgaatGCACAGACGAGCG a score=855.0 s hg17.chr17_random 1696017 9 + 2618010 AAGAGCCAA s panTro1.chr19 78582731 9 + 82489036 AAGAGCCAA a score=149.0 s hg17.chr17_random 1696141 66 + 2618010 GTGGATTCTGCACCCCCCAACTCCCCGCCCTTCTCTGCTTCCCCCTGGTGTTCCCG-ACCCCTGCCA s canFam1.chr18 37474348 59 - 66173745 GCGGCTTCTGCGC--------TATCTGCCCAGCCCAGGCCCACTGCGGGGAGCCCGCGCCCCCCTTC a score=3630.0 s hg17.chr17_random 1696207 44 + 2618010 GCCGTCCCTCCCTTCTCCCCTTCA-----GGAGGCTTCTCCAAGGCCTC s mm5.chr1 178967253 44 + 195203927 GCTGTCCCCACTCACTTTCCTTCA-----GCAGGACCCTGCAGGGCCTC s canFam1.chr18 37474407 49 - 66173745 TCTGTGCCTCCCCCGCCCCCTCCAGGGCTGGGTAGCCTCACAAGGCCTC a score=14843.0 s hg17.chr17_random 1696251 1033 + 2618010 --ACTTCCAAGCTGGAGAAAAGCAACTAGAAAGTTCCTCTC---------------------TTCACCTCCC--ACCCGACCTAAGCCAGGTAACTCGCCTGTGGAGATCCTCGAGGGGACC------GGGAAACAGGATGGGCTGTGAGGAGG--GGGCTTCGA--CCCTTAACGGGGCAC------AACACCTGGGGAAGCACGCATGGGGATGAACCTGAACTGTGGCAAACGTGCCACCCTCCATATCCCAGATGGCCACTGCGTGGACAGACAGCCACCCCCAAAGATGGGGCAGACTTGGGTGGTTCCAAGTCCTCCTCGGG-GCCCAGCTCCCTGTTCAGATGAAAATCATCGACCTCCAGCTCTGCATGGCTCCTGCGTGGGTCCTCTTGTGCCTCTGTTGGGTGTGGCTATCTCANGCTGTGGCCCTGGACCGGATGCTGGTGTTGGTGACTGTGCCGCTGGCCACAGATACTCCTCTGTAGGCAGGGTTGGGTTCAGTCCTTGACGGGCCTCACTTCCAGCCTGGGTCCTGCTGCTGAAGCCCTCAGCTGTTCAGGCCCTCTGGCCTCCT--TGCCTGGGCATGGGAGGGTTTATGTCTCTGAGCTGCTTCTCTGCTCCACGCCTCCCGCTCCTTCAAGC-----CTCCACTGTTACCTCCTTCAGAAAGCTGCTCATTCCCCAGCCCACTCCAACCCTCCCTGTGTCCACAGTGCTCTGTGT-GTCTTCT-CTGCAG---------TGTATTGTAATTACCAGTTGAAATCATGGCAATGTGGACCTATGCTCTGGCCCAGGNCCAAGTGCNTTGTNNGTGAGGNACAAGANNTGG--TGCCA--GCCTGTGCGNNGGGAGCAGTCCTGCNTACANGGCAAGCTGTGGAAGTTTAAGACGTTATGCTACTTGCCCAGGGCCTCACAGCTCGNGGAGGAAGGGTGGAGGGGGACAGTCAGCCTTCAGGCCTCACCCCTTACACTGCATCTTCTCCTGCCCTGTCTGGCTGCCAGCTTCCCCACCAAGACTCTGAACTGCTGAGGGGACAGGTTCCCACCACCTAGCCCAGTTGTACAGCCTCAGCCT s canFam1.chr18 37474456 913 - 66173745 CTAGTGCCAG--CGGAGAAAGCCAACTAGAAAGTCCCTGTCGACCCTCGACCCTGGGATGACTTCCTCTCCCTGGCCCTGCCCAGG--AGGGTGTCTGGGAGCTGGGATCCTGTCTGCGACCCCACAGAAGAAAGGTGATGGGCCGTGGGGAGGAGGGGCTCAGAGTATCCTGGCGGGGGGCTGTGCTGAGGCCCAGGGAAGCAAGTGTGGGGATTAAGGT------TGGGGAACATGCTGCCCCCAAGCTCTC--------------TGGACAGACAGCCAGGGCTGAGAGATGGGCTCACAGAGCCAGCTCCAGGCTCCCATCCTGCGCACTCCTGTCAGCCTAG-TGAGGATCACTGACC-CCGGCTCTG-----------------------TGATCCCCTGCCGG--------ATTCCATACCCTGCCCTAGGGCTG--------CGTTTGTGAGCAT-CCACGGGCCCCCTGTGCCCC-CTGCAGGCAGGTTGGGGCTGACTCTTCAGCTGGCCT------------GGG----------GGTGCCTTCAG--GCCTGGGCCACCTTCTCTCCTGCTACCTG-------------------CCCTCAGCTGAG----------------CCCCCTCCTGCAACCTGCTGCTCCATGGTTACTCCCTTCTGAAAGCTGGTCACACCCCAGCCCACTCCCACTCCTCCTATGTCCACAGGGCTGTGTGCAGCCCTCTGCTGCAGACAACAGAATGTATTGTAATTATCTGTTTAAATCATGGCAATGCACACCCGTGCTCCTGCCCAAGCCTGAGTACTTGGCAGGTGAGGAGCACAAAGGGGCCTGTCACCACCTGTGTGGTGGGAGTGGTCTTCCTCA----------TGGGTGAGTG---------------------CAAGGTCTCTCAGGC--AGGGGCACAGGTG--GGGGGACAGTCAGCCTCCAGGCCTCACCCCTTA----------------GCCCCATCTGGCCGCCTCCATCCCCATT-GGACTCTGACCTGCTTGAGGGCCACGTGGGATGCACC---CTCGGTTGCC---CCCCAGCCT a score=2465.0 s hg17.chr17_random 1697452 44 + 2618010 ctcctaagtagctgggattacag-gcatgcaccaccgtatccagc- s panTro1.chr19 3903146 46 - 82489036 CTCCTAAGTAGCTGGGATTACTGTGCTTGCTCCACTGTGTCCAGCA a score=51760.0 s hg17.chr17_random 1697496 345 + 2618010 TTCCCCA----CTTTTAGAATGAT-GGAAGAGCTGGTCTGGGTCAACTTCAGAGTCTCCTGTCCTTCTCCACCTCCTCCCCCAGCCCAGCTATGTTTTCCTCCAGAGCCNAGGANCCCTACTGCCGCNGC--GAGTGTGTGACTTGGGGAGGGAANTG----------GTTTTTCCACCAGTTGAACTGGGCCTCCAGGTGAAACTCAGGGNTTTTATCTTTCTTTCTTTC---Catccatttatccaacaaata-tagagaaact-----aggatatatcatgcacttggtttatggtagtgaatgaaacagatatttcccagccttcataggncantggctgag-acagaaacaaatgaaaatataanna s panTro1.chr19 3903192 347 - 82489036 TTCCCCA----CTTTCAGAATGAT-GGAAGAGCTGGTCTGGGTCAACTTCAGAGTCTCCTGTCCTTCTCCACCTCCTCCCCCAGCCCAGCTATGTTTTCCTCCAGAGCCAAGGAGCCCTACAGCCGCTGC--GAGTGTGTGACTTGGGGAGGGAAATG----------GTTTTTCCACCAGTTGAACAGGGCCTCCAGGTGAAACTCAGGGGTTGTATCTTTCTTTCTTTCTTTCCtccatttatccaacaaata-taga-----tcctccaggatacatcatgcacttggtttatggtagtgaatgatacagatatttcccagccttcataggtca-tggctgag-acagaaacaaatgaaaatataatta s canFam1.chr18 37475389 359 - 66173745 TTCCCCAGGGGTGTTGAGAAGGGTGGGAAGAGCCTGTCTGGGTCACCCTCAGGGTCTTCTCTCTTTCCTCACCTC--TCCCTATCCCGTCTGTGCTTTCCTTCACAGCCGCGGGGCCTTGC--CCACTACAGAGGTGTGGGACGTGGAGGGGGATGTGGGAGGAGACAGTTTGTCCACCAGGTAACCTGGGCCTCCAGCTGAGGCTCAGGGTTT---TGCTTTTTCCATTCACTTattcatccatccagcaaatgtttgagaacct-----cgtatatgtcgggccctgggtttacagtggtgaacaaaactgatgctccccagccctcaaaggcca-tgggtgagtaaaaaaacaagtaaaaatgtaatga a score=5719.0 s hg17.chr17_random 1697841 120 + 2618010 ncanctnnnnannnnnnccagnnngnnatnncnnnntnaccngnaaactggggttggggactcctttngcatgggtggtcaggnnaggcctctcattgaagacngaagaccctgggagtg s panTro1.chr19 3903539 119 - 82489036 -caacttgcaacaaatgccaggtagctatgacagagtgacctggaaactggggttggggactcctttagcatgggtggtcagggaaggcctctcattgaagaccgaagaccctgggagtg a score=21396.0 s hg17.chr17_random 1697961 150 + 2618010 ggatctgagagatgtgatggggccagcAGCCAGGCAGGGAGGTGGCAGGTAAGAAGGTCTGGACTGAGACAGGGTAGGGGGAGAACTTGGTCCCTGGG---AAGCCGGNGTCCTGCTGTGCCTTTGTAGCATCTGACGCTCTCCTT------CTGGAAA s panTro1.chr19 3903658 150 - 82489036 ggatctgagagatgtgatggggccagcAGCCAGGCAGGGAGGTGGCAGGTAAGAAGGTCTGGACTGAGACAGGGTAGGGGGAGAACTTGGTCCCTGGG---AAGCCGGGGTCCTGCTGGGCCTTTGTAGCACCTGATGCTCTCCTT------CTGGAAA s canFam1.chr18 37475783 155 - 66173745 ggacttgagagatgagatgggTC--GGGGTCTCACAAGGAAGCAGCAAGCGAGAAGATCTCCCTTGGGGTGGGGTCAGGGGATCACTGGGTCCCTGGTTTCTAACCTGGTCCCT--TAGAAATCTGAAGCATCTGAAGCCCTCCTGGGGACACAGGAGA a score=36604.0 s hg17.chr17_random 1698111 414 + 2618010 TGCTCTtgatacggtttggatgtgtgtccccctccaactctcgtgttgaaatcatttgccagtgttagaggtggggcctggtgggaggtgattggatcatgggggcggatccctcatggatggcttagtaccacccccttggtgatgagtgagttgtccctcaattagttcatgtgagatctggttgtttaaaagagtgtggtgcctccctcatctcccctcttgccgtgtgatacgcctcctccctcttcagcttccaccatgagtggaagcttcctgagacctcaccaggagcagatgccaacacggtgcttcctgtacagcntgcagaaccagnagccaattaaacctcttctcttgataaatgacccagcntcaggcatctctgtatagnaatgcaagaacagcntanta s panTro1.chr19 3903808 414 - 82489036 TGCTCTtgatacggtttggatgcgtgtccccctccaactctcatgttgaaatcgtttgccagtgttagaggtggggcctggtgggaggtgattggatcatgggggaggatccctcatggatggcttagcaccacccccttggtgatgagtgagttgtccctcaattagttcatgtgagatctggttgtttaaaagagtgtggtgcctccctcatctcccctcttgccatgtaatacgcctactccctcttcaccttccaccatgagtggaagcttcctgagacctcaccaggagcagatgccaacatggtgcttcctgtacagcctgcagaaccaggagccaattaaacctcttctcttgataaatgacccagcctcaggcatttccgtatagcaatgcaagaacagcctaata a score=98267.0 s hg17.chr17_random 1698525 858 + 2618010 GACCTNTCATCCTTGGNATTTTGNTGTNGTTTCTCAGCCTTGTCTTCCTCCTTTTGAGGGCTCTTCCTCCTCCCTCCTCACGGGCCTTTCTCTC-CCACCACTGCCTCCTGGCGTGTCCC-AGTGTGACCTTCCTCACCTCTGTAATCTGCTCTCATCCTGTCTTCTCACTTCGCGTTCTTCTCCATGCCTGTGGCTCCAGCCACCATTCAT----ATTTTTTTGTAATCCCTATgttatctat-tgctgtgtaatagattatccccaaatttaatggctttagacaacaatcatttattagctcatggtttctgaggttcaggaatctgggaggggctcagctgagtgcctggctcagcgtcccttcgaggttgcgttgatatgttgnccggggccgcaggcatgggaaggntcaactggggctggaggatctgcttgtaagctg---------------------------------gtctctctcgtggctgctggcngtggccccagttcctctccaggtggccnctctgtagggctgcntgagtgtcctcatgacaggncggctgncttcctccagagtgagagaaagatggagctcttttaagacctaatcttagaattgatgaaccttcacttntgntgaattctattggtcacacagacncagtgctggtatgacaggggaggtga---caccagggggtgtctgggcaccaggaggtgaagac-acaggggntgtcttagagcctggactgccacaGTCCCCAGTGCAGGCAGGATTCTCTNC---AGCTTGGATGCTAGCA-----CCACC-ACTGANCAACCCTCC--TCCCCGACATTCCNGGGGCTCNTCAAACTCNNCNTGTCC-AGTGTGAGCTCAGCCCCATCGGCCTT------GAAACATCA s panTro1.chr19 3904222 889 - 82489036 GGGCTCTCATCCTTGGGATTTTGTTGT-GTTTCTCAGCCTTGTCTTCCTCCTTTTGAGGGCTCTTCCTCCTCCCTCCTCACAGACCTTTCTCTC-CCACCACTGCCTCCTGGCGTGTCCC-AGTGTGACCTTCCTCACCTCTGTAATCTGCTCTCATCCCGTCTTCTCACTTCGTGTTCTTCTCCATGCCTGTGGCTCCAGCCACCATTCAT----ATTTTTTTGTAATCCCCATgttatctat-tgctgtgtaatagattatccccaaatttaatggctttagacaacaatcatttatttgctcatggtttctgaggttcaggaatctgggaggggctcagctgagtgcctggctcagcgtcccttcgaggttgcgttgatatgttggccggggccgcaggcatgggaaggctcaactggggctggaggatctgcttgtaagctggtctctctcattggaggatctgcttccaagcttgtctctctcgtggctgctggctgtggccccagttcctctccaggtggcctctctgtagggctgcctgagtgtcctcatgacagggcggctgacttcctccagagtgagagaaagatggaggtcttttaagatctaatcttagaattgatgaacttttacttctgctgaattctattggtcacacagac-caatgctggtatgacaggggaggtga---caccagggggtgtctgggcaccaggaggtgaagac-acaggggctgtcttagagcctggactgccacaGGCCCCAGTGCAGGCAGGATTCTCTCC---AGCTTAGATGCTAGCA-----CCACC-ACTGACCAACCCTCC--TCCCCGACATTCCAGGGGCTCTTCAAACTCAGCATGTCC-AACGTGAGCTCAGCCCCATCGGCCTT------GAAACATCA s canFam1.chr18 37475938 715 - 66173745 ----------GACTGGGAATTTGTAGC-ATCTTGCAGCCTTAGCCCCCTTCTCTGCAGGGGCC--CCCTGTTCCTCTGCACAAGCTTCTCTTGCACCCCCGCTGCCTCCCAGGGTGACCTGGGTGTGCCCCTCACCAC--CTGTACCTCCCACCCACCCCATCTTCTCACT---------------------GGCCTAAAGCCACCCTTTACATGGATCCTTGTCTAATCCCtgtatcaggtatgtgttgatccactggttaccccaaaccttagcagctttaaacaatgatcatttcttagcctgcggtttcaggggttcaggagtc--ggagagtctgagc---------agctcagaggctttc----------------------acagggttgtagtca------------------------------gcatgccggctg----------------------------------------TCGAAG--------AGGGGCCCCAGTTCCTCC------------------------CATGGGTGTCCCCATGATGTGGCG-----------TGAGAGCGGGTGACA--------tcattcatgacctgatctgagaactgagacgccatcacttc-actgcattccagtggttgcagagcc-cagccctggcgtgaggtgggaggggactgcgccagggga-----------caggaagtgaggactgtcagcgctgtcctggaggctgg--tgccacaGCCCCCAAAGCAGACAAGATTGTCTCCCAAACCCTAGGTCCTGGCACTCAGCCACCTGCTACATATCCCCCCAGCCCCTGATGTGCCAGGGGCTCTTCAAGCACAACAGGCCCAAGTCTGAAGCCAACCTCACAAGCCTTGGTTGGGAAACCTTA a score=28903.0 s hg17.chr17_random 1699383 309 + 2618010 TACTGTGCCAtttcttttttgttttgtttttgagacagagtcttgctctgtcatccaggctggagtgcaatggcatgatcttggctcaccgcaatttccacctcccaggttcatgcaattctcctgcctctcgagtagctgggatttcaggtatgcaccaccatacttgactaatttttgtagttttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattacaggtatgaaccaccntgcccggcc s panTro1.chr19 3905111 309 - 82489036 TATTGTGCCAtttcttttttgttttgtttttgagacagagtcttgctctgtcatccaggctggagtgcagtggcatgatcttggctcaccgcaatttccacctcccaggttcatgcaattctcctgcctctcgagtagctgggatttcaggtatgcaccaccatacttgactaatttttgtagttttttagtagagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcaagtgatctgcccaccttggcctcccaaagtgctgggattacaggtatgaaccaccatgcccggcc a score=35879.0 s hg17.chr17_random 1699692 391 + 2618010 TTGTGCCATTTTTAACATAGGAAAAGGTGTAAGGAATAGCAGAGTAGACTGTGGGTAATAATGCGATAAATGACACCATC-ACCAAGCTGAAGGCCCCTGCACTGCAATTTCCTGNATGTCCTGGTCTCCCAAGCCCAACTTCTTCCTCCTCACCTTATCACAAACTGGCCCCCTATTTATGTAGTTGGACAAACCCGAAACCCGGGAGGTGGCTTGCGTCTTCCTCATCTCCCATGTGGGTGGGACTGGTCACCGAGTCCTGGTGTTCACAGTCACTAACTCCATCCGCCCT---TCCGTAGGCNCATtggatca----cctgggccacctccctactgagattcctgccttggttttt---cccctctacccagcccacatcggcaccagagcgtgcttc s panTro1.chr19 3905420 389 - 82489036 TTGTGCCATTTTTAACATAGGAAAAGGTGTAAGGAATAGCAGAGTGGACCATGGGTAATAATGCGATAAATGACACCATC-ACCAAGCGGAAGGCCCCTGCACTGCAACTTCCTG-ATGTCATGGTCTCCCAAGCCCAACTTCCTCCTCCTCACCTTATCACAAACTGGCCCCCTATTTATGTAGTTTGACAAACCCGAAACCTGGGAGGTGGCTTGCGTCTTCCTCATCTCCCATGTGGGTGGGACTGGTCACCGAGTCCTGGTGTTCACAGTCACTAACTCCATCCGCCTT---TCCGTAAGC-CATTGGATCA----CCTGGGCCgcctccctactgagattcctgccttggttttt---cccatctacccagcccacatcggcaccagagcatgcttc s canFam1.chr18 37476653 264 - 66173745 TTAGGTAGCTGTTAACATATATTGAGGTGTCAGGAATACTGTAG-GGAGCACACGTAACCCTATAACAACCTGCATCATCAACCCAGCTGGGAACCC--------------------------------------------Tccccccccccccccc-----------gcccc---------------------------------------------------------------------gggccTGGCCACC--ATCCTGAC-----CAGT------CTCTATCCACCTTGGGTGTCTCAGTTTCTTGGATGATCGCCCGGGGTTGCCTCCCGGGGGAGATTCCTGGTTTGATTTTTAACTCCTTCCACCCCATCCTCACTGGGGCCAGATTGAGCTTC a score=33867.0 s hg17.chr17_random 1700083 232 + 2618010 cgaatacccaaatcttcatcatgtcctacttaaaattcctcaaatggctttttaaagtccttggcatggtgttcaaggtacttcctgatctggtttctaacttatatgtctggtctcatctcctgctacACCTAGTCCTAAACTTCCTCTATTATTTGCATTCCCTAGATGACATTTCCTCTACCCCTTCTGTCCAAGGCTCTGCAcctgccctcctctctcctcccctccc s panTro1.chr19 3905809 232 - 82489036 cgaatacccaaatcttcatcatgtcctacttaaaattcctcaaatggctttttaaaatccttggcatggtgttcaaggtacttcctgatctggtttctaacttatatgtctggtctcatctcctgctacCACTAGTCCTAAACTTCCTCTATTATTTGCATTCCCTAGATGACATTTCCCCTACCCCTTCTGTCCAAGGCTCTGCAcctgccctcctctctcctcccatcct s canFam1.chr18 37477125 207 - 66173745 Ataagacacaagtctgcatagtttcctgcttaaaattcttcaagtggccattgcgggtccttggcgtggtgttccaggtgccgcatgatctggttcccgacttacacggc-agcctcatcttccagcaTGTCTAGTCCCAGGCT---------------------TGGAAGACACCTTC-CAGCCCCTCCCGT--GTGGTTCCATACCTGCTGGATCACCTGCTCCGCTCCC a score=582.0 s hg17.chr17_random 1700315 6 + 2618010 ctctcc s panTro1.chr19 3906041 6 - 82489036 ctctcc a score=1194.0 s hg17.chr17_random 1700456 268 + 2618010 GGGGGCACAGGGGTGCAGATGGAGGGAGGTGGGGGAG-----AGGGTATGA-----CAGG--GTAGGGCACGGGGCAGGGGAGGGGTGCAGACATCCACAGTCTGGGTGCAGGTGTAGGGTG-GCAGAAGGTGGTTGGGGGTGTAGGCGGTGGAC----GGGGTGGAGGTT----AAG--GCAGAG-GCCCCTGTGGGCAG-------GGACCCTGCAGGC----CGGGACCCTGCAGGCCTCCAGCCTCGGCACAGCCTGAGCAGTGGCAGCGTGGCAGATGGGAACGTGCAGAAACATGCA s mm5.chr11 118491013 268 + 121648857 GGGTGCAGAAAGGTGAGAGGGGAGGAAGGAGTGGGAGTACCCAAGGAGTGAAGACACAAGAAGTGGGGAGTGGAGGAGGTAGGGAGAGGAGACAT----GGCATGAGGGTGAGAGAAGGGTGCGCTGAGGGGTGT--GGAGTGCTGGCCTTGGACTCAGGGAGCAGGGGGTGCCCAAGCTACAGAGTAACCCCAGAGGCAGATTGAGTGGACCCCACAGGCAAAGCAGAATTTTGT----TTCCA-------------CTGAGT------------GTAGAAGATAGTGTGCCAGGATACTAG a score=4469.0 s hg17.chr17_random 1700724 385 + 2618010 GAAGCATGGCCCCTGGT-TAATAAGATTAGGATGTTGAACGGCCGACATGTTCTCCGAGACTGGCTGTATGCCACAAATGGAGGGGACTGCGACCTTAATAGAATGCTGAACTTTTGGAAAGTGGAGCAAAATGGAGAGAGTCAGAGTTGGGGACTGAGAGTCC------CCCTCTCGGG---------------------------------CTGGAGGCCAGGGCTACTGGTGACCTGAGGGCTTCCGGGAGTTCAGAGTGGGGCATTTTCACT--TCTGGATCCTAAAAGCCGGTGGGCCTGGATGGGAC-TCATTCCTTGGCGTCCTGTTACAGCAACAGGAATGA-------CCAGCGCTCCTAAAGGCCCCCCACCTGGCCCTGAGACCTCC----ATCT--CTGCCCAC---GGTCTGG---------------CTGCATCTCCTGGAAGGT s mm5.chr11 118491281 296 + 121648857 GTAACCTCGTTTGAGACATTGTAATGCCAGGATACTAGGTAGCC------TCCTTCGAGAC---------ACTGTAACTAGAAGAGATTGCCACCTTAACAGA-TTCTGAACTTTTGAAAAACCAAGCCGAAATGAAAGTGT----------------------------------------------------------------------------GTTCAAGG--------------GAGGCCCCAGGGAGCTCAAAGGTGGAC-------------------TTGAAAGCCAGCAAACTTAGCCACAAA--CTTTCCCAGACA------------GATAGGCATGAAACTTTTCCCTTGCCC----GGAGTTCTGATCTGCCCTGGATCCCTCCCCCAACTT--CTGCCTAC---AGCCTGA---------------CTGCATTCCCTGCAGGAA s canFam1.chr18 28699449 431 + 66173745 GAAACACGGCGTTTGG--TAATAGGATTTTGATGCTGAACAGCCCAACTTTTCTCCGAGACTGGCTTTACGTCACAAATGTAGGGAACTGCGACCTTAATAGGATTCT-AACTTTTGGGCCATGGACAGAAATGGGGAGGGC--------GGGATAGAGACTCCTGGATGCCCTCCCGGAGAAAACATGGGGAACACGGGGCCTTGGGAGCCCGCAGAGGCGGGGG---CTGGTGGTGGGAGGGGCGCTGGGGCTTTGGAGTGGGCCTTGTCCCCTGCTCCGGGTCCTGACAGCCAGGAGGCCTGCATGGAGACTCCTTCCTGAGCTCTGTGTTGTAGGAACAGACCCCT-------TCAGAACCT---GGGGTTTCAGAACTGGCCCCAAGACCTCC----ACCTGGCTGCACACTCAGGTCCAAGGGGTTGCCTACAGCCTGTGTTTCCGGGCAGGT a score=-243.0 s hg17.chr17_random 1701109 13 + 2618010 TTTGTTTTTTAAT s mm5.chr11 118491577 10 + 121648857 TTT---CTCAACT a score=5603.0 s hg17.chr17_random 1701122 202 + 2618010 GCTCCTGTCCTGGGGC--TCTTCCTCTCTCTAGGCCTAGCACACAC--TTCCAGCCTGGGCATCAGGGAAATAACTCAAAACNCATAACACNGNCTTTAAAAAATACACT--AGCCAGCAACTGCAACAACATTTGNCTTTGCACAAACATTTCAAGAGAATTCCCCA----------------------------------------------------------------------------------GATAGTCT---------TGCTGTGGGGGAATTCTAGCCACCAGGAGAAA s mm5.chr11 118491587 202 + 121648857 GCTCCCAACCTAGAGC--CTATTGCTTCTCTGCACACAGCCCACTC--TTCCAGCACGCACATTAGGGAAATGGCTTAAGAC----AGCAGTGTGTTTTAAGAAT-CATT---GCAAGAGAC-GCAGTGACATTTG-TAGTGCACAAGTG-TTCGGAAGAATTCCCAG----------------------------------------------------------------------------------GCAAGCCTGCTCTGTTCTGCCCTGGAAGAATTCTAGCCACCAGAAGGAA s canFam1.chr18 28700143 265 + 66173745 GTTCCCTCCCAAGGGCCGCACCTCCCTCCCTGGGCACAGCGCACACAGCTCCAGTCCAAGGATGA-GAAAATAACTTGCATC----AGTAACATGCTTTAAAAATACATTTCGCCAAGCTGCTATAACAACATTTG--CATGCACAGTCA------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGCCC---------TGCTCCGAGAGAATGCTAGCCACCAGGAGAAA a score=27683.0 s hg17.chr17_random 1701324 380 + 2618010 GCTGCCCAGGCCCTGGCG-GGGCTTGGCTTCCCAGCGGTCCCTGGCCACCTTGAGGACAGGAGGCAAACAGG--GACAGACAGCAG-CAGAGGGGTTTGAGGNCCACAACAGCATAC---AGAATTTCCTGGCAGGATGTGTCATTAGAGCTCTCCTAGAGACGGCCCTTACCCCACCctttccttgacagcctaggacacagtgatgcccacctctgagcctcccatgcgtntatcttaggtgttcacgagattgtcacgtgaatgccgaaagcctgcctgcctcccacggagctgggagctcttgaggacaatgtctgCCACGTAGCAGGGCATGGAAATCTTCCNTGAGTGATTTGGGTGTTACCTGTGTGGAGCCGATGACCT s panTro1.chr19_random 2682396 373 - 57627672 GCTGCCCAGGCCC-GGCG-GGGCTTGGCTTCCCAGCGGTCCCTGGCCACCT-GAGGACAGGAGGCAA-CAGG--GACAGACAGCAG-CAGAGGGGTT-GAGG-CCACACTAGCATAC---AGAATTTCCTGGCAGGATGTGTCATTAGAGCTCTCCTAGAGAGGGCCCTTACCCCACCCTATCCTTGACAGCCTGGGACACAGTGATGCCCACCTCTGAGCCTCCCATGCGT-TATCTTAGGTGTTCACGAGATTGTCACGTGAATGCCGAAAGCCTGCCTGCCTCCCACGGTGCTGGGAGCTCTTGAGGACAATGTCTGCCACGTAGCAGGGCATGGAAATCTTCC-TGAGTGATTTGGGTGTTACCTGTGTGGAGCCGATGACCT s mm5.chr11 118491789 323 + 121648857 GCTATCCAGGTCCCTATG-----TAGACACCTCA-------CAGACCTTCT-GGGAGGGGAAGGGAA-TAGAACGTCTGTCAACA-----AGGAGAT-GATG-CCGAAGCAACATG-------------GGGTAACATTTGTCATTC-AACTCTCCCAGCTAATG----------ACCCTTTTCTTGACA-CCTGGG-CACAGTGGTG-CCACAGCTGAGCAACATAAGCAT-CCTCTTGGGTG-GCATGAGATTGACAAA-AAGTGTCAAAAGCTTGCCTGTCTCCCATGGGAC--------CTTTAAGATGGTGTTCCCCACATGGACAGACAAGGACATCTTCC--AGGTGACTTG---GTTACACCTATACAAGGGATGACCT s canFam1.chr18 28700408 235 + 66173745 CCTGCCCTGGCCCTGGTGTGGGCACCAGTCCTCGGGTGCCCCCACCTGCCCTGAGCACAGGAGGCAAACAAG--AACAGAGTGCAACCAGCGGCATCGGAGG-TAGAAACAGTCCACAGAAGAACTTCTTGGCAGGACATGGCGTTTAAACCC-----------------------------------CTGCCTGGGACAAGGTGTCA---------------CATGTCCCT-TTTCTTGGAGA---------------CCTGAGTG-------------TGCCCTGCGTGGAGG-----------CAGGACGGT-----------------------------------------------------------GAGCCGGGAACCT a score=87230.0 s hg17.chr17_random 1701704 560 + 2618010 TTCACGGTCCTTGCCTGCCTCGGGACCCCTGTTCTGTCAGGCTGTCCCCATGCTA-TCCCTCCCAGCCAGCCCATCANCCTCAAAGAAGCGGGGCTGTCATGAGCCTGCACTGGCTGAGGCCATCATGAGAGCCCTCCTAAGGTGGAAGCGGAAGTCCNTNGGGTCCACCCC-CTGCATGGCAGCCCCC-ACCCAGGTGCACTGCCACTCCTCCCCCTGGCCCCATGACTCaaggaactttcctgggagctgggaaagctgggaaatatctcaatttaggtcatggctataatggtacagatatttgtcaaaactcactggaccatactaagacctacgcatttcatagtatgtaaattaccctcagttttTTAATT---TAAAAAAGTTAACTCCTGGACCGAAAACAGATT-TGAGCAAAAGCCACTGCCTCAGACCCCTAAGGCTTCCAATGGACCGCAGAGTCTTTTATTCAGCCAAAGTCAGCCAATGGAGCCCAAGCAATACGTTTGGGAAAAAAAGCAATCATCAATGTAATGATAAGGAAAGTGTCTCATACGTAGTAC s panTro1.chr19_random 2682769 556 - 57627672 TTCACGGTCCTTGCCTGCCTCGGGACCCCTGTTCGGTCAGGCTGTCCCCACGCTA-TCCCTCCCAGCCAGCCCATCA-CCTCAAAGAAGCAGGGCTGTCATGAGCCTGCACTGGCTGAGGCCATCATGAGAGCCCTCCTAAGGTGGAAGCGGAAGTCCT--GGGTCCACCCC-CTGCATGGCAGCCCCC-ACCCAGGTGCACTGCCACTCCTCCCCCTGGCCCCATGACTCaaggaactttcctgggagctgggaaagctgggaaatatctcaatttaggtcatggctataatggtacagatatttatcaaaactcactggaccatactaagacctacgcatttcatagtatgtaaattaccctcagttttTTAATT---TAAAAAAGTTACCTCCTGGACCGAAAACAGATT--GAGCAAAAGCCACTGCCTCAGACCCCTAAGGCTTCCAATGGACTGCAGAGTCTTTTATTCAGCCAAAGTCAGCCAATGGAGCCCAAGCAATACGTTTGGGAAAAAAAGCAATCATCAATGTAATGATAAGGAAAGTGTCCCATACGTAGTAC s canFam1.chr18 28700643 544 + 66173745 TGCTAGCCCTCTTTTTGCCTT-GGAGCCCTCTACTGGCTAGCTGTCCCTTTGCTGCCCCCTCCCCACCTGTCTGTTA-GCTCAAAGGTGCTGGGTTCTCATGGGCCTGCACTGGTGGAGGCCACCACGAGAGTCCTGGTGAGGCTGGAGCTTCAGCCTC---TGTCCACCTCGCTGCATCACATCCTCCGGCTCAGGGACTTCAGCACCCCT-------GCCAGatg----gaggaaccttctggagatgtaggga--ctgttccatgtctcaatgtaggagatggttattcaggtgtatacagttgtcaaaactcctttgactgtactaagacctgtacatttcacaatatgtaaattactcccaattttTCAATTAAAAAAAAAAATCACCTCCTAGACTGACAATACATCTTGAGTCAGAGCCACTCTCTCAG-TCCCTAAGGC-TCTGACGGGTTGCAGAGCTTTTCAGTTGGCCAGAGTCAGCGACAGAAGCCCGATCAATACGTCTGGG--AAGAAGCAATAATCAGTGTAATGATACTGTATGTGTCCCACGCTCAGGC- a score=26778.0 s hg17.chr17_random 1702264 180 + 2618010 TAGGAGACCTGCCTCGGTGAG-TTTCT--ACCANGCAGTGGCAGGAAGGCCAGAAGCCACCNGGTGTNCCACACAAAGNCCT------GGCTCTTTCCTCATCAGTTCTCTGGCAGTGAGGAGAGGGC-AGGAGTAAACACGAAGCTCTAGAACAATGTCCTCTTCCCAGCCC-------------------CCC-AGCTGGCTGCCTGG s panTro1.chr19_random 2683325 176 - 57627672 CGGGAGACCTGCCTCGGTGAG-TTTCT--ACCA-GCAGTGGCAGGAAGGCCAGAAGCCACC-GGTGT-CCACCCAAAG-CCT------GGCTCTTTCCTCATCAGTTCTCTGGTAGTGAGGAGAGGGC-AGGAGTAAACACGAAGCTCTAGAACAATGTCCTCTTCCCAGCCC-------------------CCC-AGCTGGCTGCCTGG s mm5.chr11 118492234 170 + 121648857 TGAGAGGCATGCCCCAGTGGG-TTTTCAAACTG-GCTCTAGTGGGAAGGCC-----CCACCAGG----CTAC-CAAGG-CCT------GTATCATTGCTCATGAAT----------TGAGGAGACAG---GGAAGCAGCATGGATATCTAGGA-------TTCATCCCAGTCCACCTTGTCTGTGAGTCTAACCC-TGGCCTCTCCCTAG s canFam1.chr18 28701187 185 + 66173745 TGAGACACCTGCCCCAGGGGGACTTCC--GCCA-GCAGCGGCAGGAAGG-CAACAGCCACC-AGTGTGCCACCCAAAC-CCTCAGTCCGGACCTTTGCTTGTCAGCTCTCTTGCAAAAAGAAGAGAAAGAAGAGAAAACATGACGATACAGGGAAGTGTCCTCCTCCAGGACC-------------------CCTGTGCTGGCTGCCTTG a score=7091.0 s hg17.chr17_random 1702444 62 + 2618010 GTAAGGTGCCAG--------GTAGGGATGGACATTACATACACA-AGGCTGGTGGTACTGAGGGGCCATCT s panTro1.chr19_random 2683501 62 - 57627672 GTAAGGTGCCAG--------GTAGGGATGGACATTACATACACA-AGGCTGGTGGTACTGAGGGGCCATCT s mm5.chr11 118492404 69 + 121648857 TTA--GCACCAGCAATAGGCAAAGGGCTAAAGGCAAAGCACACATAGGATGGGGGTGTTGATGGGCTCTCT a score=62275.0 s hg17.chr17_random 1702506 375 + 2618010 CTGAAGGTGTGCACCTTACAGCAACACAGAT-GGGCACGGCCAAAGCTGCTCCCC-TCCCCTCTGGAGC-CAATGGCCACCCCAGCAGGGACTAAGCCAAAGCTTAGAGTNCTGCCCAAGACCTCCCCAGGTTAAGAGAGGCTACTGCAGGACTCCAGGAGCTTCCCCACTCCCTCTGACAGCAACAAGGCCCTGGCCTTGGACCAGACCCC--TAGAAGAGCAGATGTTAG-GCAGATGTGCAGGAGGCTCCAGAAGG-TTATGGTGGGAACAGCTGTGGGTGCTGAGGAGCAGACAAAAGCAGACAGGAGAGGAGCAGAATGGAG-----------------------------------ATTTACCTCTTNTGGCAAGAGGCTCTTCTGACCACCNGCTTGCCCTGCCTTTTGG s panTro1.chr19_random 2683563 372 - 57627672 CTGAAGGTGTGCACCTTACAGCAACACAGAT-GGGCACGGCCAAAGCTGCTCCCC-TCCCCTCTGGAGC-CAATGGCCACCCCAGCAGGGACTAAGCCAAAGCTTAGAGT-CTGCCCAAGACCTCCCCAGGTTAAGAGAGACTACTGCAGGACTCCAGGAGCTTCCCCACTCCCTCTGACAGCAACAAGGCCCTGGCCTTGGACCAGCCCCC--TAGAAGAGCAGATGTTAG-GCAGATGTGCAGGAGGCTCCAGAAGG-TTATGGTGGGAACAGCTGTGGGTGCTGAGGAGCAGACAAAAGCAGACAGGAGAGGAGCAGAATGGAG-----------------------------------ATTTACCTCTT-TGGCAAGAGGCTCTTCTGACCACC-GCTTGCCCTGCCTTCTGG s mm5.chr11 118492473 273 + 121648857 CTGA---TGTG---CTCACA------------AGGCACAGCTGTCCCTCTTATGC-TCATCTCTTATGC-TCA--GTCTCACCAGCAGCTACCAAG-AAACACCTGGAAT-CTGCCCAAGACCTCCCTATGTCTGGGGAGATGAACACAGACCTCCAGAGA-------ACTTTCTCTGGCACTGATGAGGCCCTGTTCTTAGCTTGGCTTTCATGGGACCAACAGATGTTTG---------GCAGGAGGAT-----------------GGAACAGCTG-GGTTAC-------------AGAGCAGGCAGGG---------------------------------------------------------------TGGT-----GCTCTGTCGACTGCA-----TTCCTATCCATTGG s canFam1.chr18 28701440 412 + 66173745 CATGGGGTCAGCAGCTCTGAATAGTGCAGGTAGGGCAGGCCCATAGCTGTTCCCCATCCCCTCTGGGGCACTATGGCTACCACATTGGCCACGGAGCAAACACCCGGAGT-CTGCCCAAGACCACGCCAGGTCAAGACAGGCTGCTCCAGAACTGCAGAGGCCTGCCCTCCCCCTCCAACAGCGACCAAGCCCTGGTCTTGGACAGGCCTCCCTGGAAGCAGCAGATGGTGAAGCCAATGTGCAGGAGGGCTCAGAAGGCCCACGGTGGGAACAGCTG-TTATGCTGAGGAACAGCCGAGAACAGA-GGGAGAGAAGCAGGATGGGGAACAAGGGCCATCACAACCGGCTTCCTCTCTCCTAATTCGCTTCCT-CGGCACGAGGATCTTCTGCCCACC-TCCTGCCCTGTCTTCTAG a score=12777.0 s hg17.chr17_random 1702881 254 + 2618010 CTGAGAA-CACAGACTGAGGCCTGGCAGAGAGAAGGCCTTGCTATGTAAGCCCAGGTTGACTCAGGGCCAGTTTTGGCCTTCAGTATGCTCTCCCTCAGGGATCCC-GCCATGACATCTGCCTTCATAGGAACTCGTTTTCCTTTTGCGCTCCTTTGGGCAGCATTCTTACAATCCAACAGAAGAATTCTGGCTCTTGTGGAGCTT--CATGA-AGGGGGAAGACCT-CCCAAAACCAGTATGGCTCAACAAAGC----------------------------------------------------------Gccac s mm5.chr11 118492746 279 + 121648857 GTGTGAAGCATGGGTCACAGCCCAGCAGAGAG--------GCTGTCTGAGTCCAGATCGAGTCTGAGCCTGTAGAGTCCTCCACTCTG--CCACCTGGAAGGTCCT-GTCTTGCTCTATGTCATCTCAGGAATTTGTTTTCTTTCTAAGATCTTTCTGAT-GTCTTTTTAGAACCCAGCATATGAATT-TGGGGCTCATGGAATTTTCCATGGCATAAGGAAGACCT-CTGAGGGTCAGCACAGCTCAGTGAGGCTGCGAGCACACATCAAGATGAAGCAGGGGCAA-------------------------GGCCTC s canFam1.chr18 28701852 297 + 66173745 GAGTGAAACACagaccaagggctggcagagaggaggcctttc-------------------ttgtactctgctgtggcctccagtctgccctccctgagtgaccctggccatgaaatctgccttcttgggacctgattttccttctgAGGTCCTTTGGGTGATGCTCTTACTACCAAGAAGATGAGTTTCAGCTCATGCGGAGCTC--TATGGCAAACAGAAGACCTCCCCAGGGAAAGCATGGTTTGGTGAAACTAGGAGTACACATCGGAAAGAAGCCAAGGTCACTGAAGACACTGACTTTattcattcagccat a score=8222.0 s hg17.chr17_random 1703135 116 + 2618010 ---------------ctgcccactcatccatccacccatctacatacctacccaaccactcacccatccatctact---cacacagccatccttccacccacccnat---ccatctacccattcactcatccatcca s mm5.chr11 118493606 121 + 121648857 ---------------CTACCTATCCATAGAATCATCTATCCATGTGCCCAATCATTTACTCACCTGTTCATATACTAACTACATAGCTGCCCATTCATCCGTTCAACTA-CAATCTATGTATCCATTCATCCGTTCA s canFam1.chr18 28702149 133 + 66173745 ctgtccatctgccatccaaccatttgttccttcatctgtccattgatctatccatccatccactcatccatccatc---cacccacctgccc-cccatccacccacctgcccatccacccatttacctaccaatcca a score=592.0 s hg17.chr17_random 1703251 6 + 2618010 tccaTA s mm5.chr11 118493727 6 + 121648857 TCTCTT s canFam1.chr18 28765375 6 + 66173745 tccata a score=0.0 s hg17.chr17_random 1703257 7 + 2618010 AGCCTAC a score=114.0 s hg17.chr17_random 1703257 7 + 2618010 AGCCTAC s mm5.chr11 118493733 7 + 121648857 TAACTAC a score=257658.0 s hg17.chr17_random 1703264 1369 + 2618010 CTACAGCGTTTTGGGGCGTGTTTGTGATGCGGCAGTCGCTGACTGGTACCCCCTTCCC--CC----AGGCATGAG---GACGTTCCNTCAACTTNCATCCCGCTTCNCCAGGATTAGCTAGAAACCAACAGAGCCATGTGGCTAAATCCATTCTGGTAGGGCTTGTAATTGAGCTACTTGGTGAGATCTTCCGTTTGATTTT----CTCTTTTCATATGTTTTCAATCAGAAATATCAGAAGCTGCTTTGAATGTCCCTGCAGAGTTCTCAGAANGCATCCTCTCCCGGGTTTCTCTGGAGAGCC-CACCTTGTTTGTTGGAGAGT-GTATTCTCCTGCAGC-TTTTCAAATGC----------TACATTTTCCTCTGATGGCAGCCAGGGCATTTGATTGCATGAGAGA-------TGGTGATGTGGTTGCAACTGCTGTCGATA-TTCCTTTATGACTCTGAATTTGCATCTGTGCAAGTCTGGTAATAC----CTGAATTCCAGGCACAAATAAATGAAACTTATTT-AAAATAACTGGGAAAAATTCCACACTGGAGGTAAAATAAAAAATAG----ATTTGCTGCTACAGATGCAGAAACTGGTCCAAGAAAGACCACTGGAAATTGACTCAATAACTGGCCGGTCCCAAGAAGTCTGTAGCCAGAGTAACTGGTGGGCGCAAGGCAGAAAGGTGAACCATTAAGGCCTAGACCACACACCCTGTGGTGCCTCCACTCTCCAAGACC-------CCCCGCAACCCTGAGAATAGGAAGGTGGTGTGAGGAGAAGGG---------AGCATGGCTGGT----------CAC----GAGAGCCCTTTTCCA------CAC--NTCGGTCACTATGGTGCTG--------------------GCATCCTTCCTGTGCAATGTAAGGGG-----NCAGCAGTGGTGCCCACATTGCACAGGAGAGGCTCCATGGAGCCAAGGCAGCATGACCTTACANTAGCATGTCCACGGCAGCCTGATCCCAAGACCTCCACCTTGCAGTCCAGTGTCCTTTGCAGTAGACACCAGCAAGGCTA---------GGGACCCCAGCCCCTGCTGTTTTCATCCTAACTTGGACTTATCTGTTGTGATGGCC--------AGGCCAACC---CTGTTTGGG---AGAAGGCGGCTGGTGAGAATA--------AACAGGGAACACCGGCATCGTCTACAAACCCAGTGGAGCCACTCAGCCAGG-----------------ACCCTCAGCCCCAAGCTGCCCAAGTCACT--------------------------------------CAGCCAGGCGAGGT-------------------CCCCCCACGG------NAGCAGC------------------------------------------------------------------------------------AGGCTGGCCAGAAAGCTTCA-----------------------------------------------GACCACAAGCTTCGGACCAAGCGGCACCTAGGAAGGGAGCAGGTATGTAACCAGGGAATCACAGGACCTTGATCGAGGTCCCACTTGGAGGCAGGGGGAAAGGCTGTGGGAGAATAGATGAAGGAGCCCACGG-GGAAGC-AGACGGAGCTACTTCACGGGAGGACGGAACAT s panTro1.chr19 78853566 1365 + 82489036 ctacagcgttttggggcgtgtttgtgatgcggcagtcgctgactggtacaCCCTTCCC--CC----AGGCATGAG---GACGTTCC-TCAACTT-CATCCCGCTTC-CCAGGATTAGCTAGAACCCAACAGAGCCATGTGGCTAAATCCATTCTGGTAGGGCTTGTAATTGAGCTACTTGGTGAGATCTTCCGTTTGATTTT----CTCTTTTCATATGTTTTCAATCAGAAATATCAGAAGCTGCTTCGAATGTCCCTGCAGAGTTCTCAGAA-GCATCCTCTCCTGGGTTTCTCTGGAGAGCC-CATCTTGTTTGTTGGAGAGT-GTATTCTCCTGCAGC-TTTTCAAATGC----------TACATTTTCCTCTGATGGCAGCCAGGACATTTGATTGCATGAGAGA-------TGGTGATGTGGTTGCAACTGCTGTCGATA-TTCCTTTATGACTCTGAATTTGCATCTGTGCAAGTCTGGTAATACTTATCTGAATTCCAGGCACAAATAAATGAAACTTATTT-AAAATAACTGGGAAAAATTCCACACTGGAGGTAAAATAAAAAATAG----ATTTGCTGCTACAGATGCAGAAACTGGTCCAAGAAAGACCATTGGAAATTGACTCAATAACTGGCCGGTCCCAAGAAGTCTGTAGACAGAGTAACTGGTGGGCGCAAGGCAGAAAGGTGAACCATTAAGGCCTAGGCCACCCACCCTGTGGTGCCTCCACTCTCCAAGACC-------CCCCGCAACCCTGAGAACAGGAAGGTGGTGTGAGGAGAAGGG---------AGCATGGCTGGT----------CAC----GAGAGCCCCTTTCCA------CAC---TCGGTCACTGTGGTGCTG--------------------GCATCCTTCCTGTGCAATGTAAGGGG------CAGCAGTGGTGCCCACATTGCACAGGAGAGGCTCCATGGAGCCAAGGCAGCATGACCTTACA-TAGCATGTCCACGGCAGCCTGATCCCGAGACCTCCACCTTGCAGTCCAGTGTCCTTTGCAGTAGACACCAGCAAGGCTA---------GGGACCCCAGCCCCTGCTGTTTTCATCCTAACTTGGACTTATCTGTTGTGATGGCC--------AGGCCAATC---CTGTTTGGG---AGAAGGCGGCTGGTGAGAATA--------AACAGGGAACACCGGCATCGCCTACAAACCCAGTGGAGCCACTCAGCCAGG-----------------ACCCTCAGCCCCAAGCTGCCCAAGTCACT--------------------------------------CAGCCAGGCGAGGT-------------------CCCCCCACGG-------AGAAGC------------------------------------------------------------------------------------AGGCTGGCCAGAAAGCTTCA-----------------------------------------------GACTACAAGCTTCGGACCAAGCGGCACCTAGGAAGGGAGCAGGTGTGTAACCAGGGAATCACAGGACCTTGATCGAGGTCCCACTTGGAGGCAGGGGGAAAGGCTGTGGGAGAATAGATGAAGGAGCCCACGG-GGAAGC-AGACAGAGCTACTTCACGGGAGGACGGAACAT s mm5.chr11 118556052 1324 + 121648857 CTACAGTGGTTTGGGACTTGCTTGTTATACAGCGGTAGCTAACTGATACACCCTCTCCTACA----ACGCATGGA---GACAT----GAAACTT-CATCCTGCTC--ATGGTCTTAGCAAAATCCCATGGGGGATGTGTGGCGGACTTCATCCT-CTAGGGCTTATAATTGAGTCACTCGGTGAGGTCTTTGGTTTAATTTTTTTCTTCTTTTAACATATTTTCAATTCGAATGAGCAGATGCAGTTCAGAGCACTCCTGCTGAGCTCTCAGAA-GCATCCATCCCTGGCTTTCTCCAGAGAGCCTCATCTTGTCTGTCGGAGACCGGTGTCCTCATGTAGCTTTTTCAGATGTGAAAAACGGGGACGTTTTCCTGCACCAGCAGCCGGGGCGCCTGAGTGTGGGAGAGACACGACGTGGCGGTGTGGCTGCCGTGGCTGT------GCCTTTCACGGCTTGGGCTTCGCATCTGTGCGAGGCTGGTGGTTCTTATCTGAATTCTAAGCACAAATAAACGGGACTTATTTAAAAATAACTGGG-AAAATTCCATGCTGGAGTGGGGGGAAGGC--------CTTCGCTGCAGCAGATGCAGAAGCAGACC-----AAGATTGTTCCAGACAAGCACAGGGGTGGGCC-ACCCCGAAACTCCCAAGGTGGGACTTACTGGTGCCTGAAGGTCAGAAGGTTGAA-GGCAAAGACTCAGAAGCTCCAGCCCTTAGACTATCCGCTCTCCAGGAC---------------------AAAACCAAGATGCACAGCGAAGAGACAGG---------AGCCCAGCTGGTGAGCGGCTGGCAC----TAGAGTCTGGCCCCGGGAAGCTAT--TTGGGGCCTTGTGTTCCAGTGAGGTACACAAGGGCCAGCGTGTCCTTCTGATGAGGCACACTGGGCCAGTGCAGCATCTGTGTTC--------CAGGGGAAACTCCAGGGAGCCACAGAAAAGGGAAAATTCA--CCCTTGCCCGTGTCAAGCTGACCCT--GGCTGTGTCCTTGCAGCTGGGTCTCTCTTCGAGAGG-----AACAGGGTTACAGGGGGTGGGGGTGGCA-CTCCTGTTTCCTCGAGAGAAGTCCAGACCT-TCTAATGT-ATGACC--------AAGCCAGCC---CAGCTCTGG---AGA-------CAGTAGGATTA-----------------------CATCATCCAGA---CGACAGAGACTATTCAGCAATG-----------------CCCCT-GGCCCAGCATGACAGAAGTCACC--------------------------------------CAGTCAAACAAGAC-------------------CCCTACCTGA-------AGCAG-------------------------------------------------------------------------------------AGGCTCACCC-AAAGCTTC---------------------------------------------------------CTCTATGCTCGGTGACAGCTG----------------------AGGGAGTCACAGGACCCTGCCCGGG--CCCACATGGAGGCCAGGGG--AGACTGTGTAAGAACACAGAAAGTATCCCTGGGAGGAATT-TGACAAATTCAC-TCATAGGTGTG-GGAACAT s canFam1.chr18 28765381 1549 + 66173745 ctgctgagtttggggacttgtttgttatgcaacagtagctaactgatacaCACTTCCC--CCCTAACAGCGTGGGAGAGATGCCCC-ACAACGT-CATCCCGCTTC-TCCGCACTGGATAAAACCCAATGGAGACCTGCAGCTAAATCCACTCTGGCAGAGTTTAGAATTGATCTACTTGGTGAGATCTTTGCCTTAAATTT----TTCTTTTAACACATTTTCCATCAGAAACGTAAGGAGCCACTTGGATGGCCCCTGCAGAGTTCTCAGAA-GCATCTTGTCCCGGGTTTCTCCAGAGAGGCTTGTTTTGTTTGTTGGAGAGT-GTGTTCTCTTGCCGC-TTTTCAAATGC----------TCCATTTTGCTCTGACGGCAGCCAGGGCATTTGATCGCATGAGAGA-------TGGTGATGTGGTTGCAATTGCTGTCAATATTCCTTTTATGACTCTGAATTTGCATCTGTGCGAGGCTGGTAATTCTTATCTGAATGCCAAGCACAAATAAATGAAACTTATTT-AAAATAACTGGG-AAAATTCCATGCTGGAGGTTAAAAAAAAAAAAAATCCTTTTGCTGCTGCAGATGGAGAAGCTGGTCCTGGCAAGGCCATTTGAAATCAACTCAACAACTGGCCGGCCCCAAAGATTCTGTGG---------CAGGTGCATGCAAG-CAGAAAGACGGACAACAGAGCCCCAGAACACTCACCCTTCAGTGCCCCAATTCCCCAAGACCCCCTCCACCCCCCAACCCCGAGAGTGTGGAAGCAGCATGAGGAGAAGAGCATAGTGCTAACATCATGAGT----------CACTGTGTGGCGCCCCTGCCCA------CACACACGGTTGTCTGTGGTCCTC--------------------AGATCATCCTTGTGA--------GGG--------------GTG-----------CAGG--------------GCCAGAGGTGTGTGACGCTACA-CAGCACGTCAGTGACAGCCCAATCCCAAGACCTCTACCCTACAG-------TTCTTTGCAAGAGGCAACTGCAGGGGTT----------------------CTGCTTTTTTAATCCTAACGTAGAGCCATCTGATCTACCGACCGTATTAATGGGCCAATCGTTCTGTTTGGGGCAGGAAGGGGGTTAGTCACCGCAGCATCATGACCAGGAGAACACAGCATCATCCACCAATCTGCAGG-GCTGCCGAGCCAGGGCGCCCCCCCCACCCCCACCCCCTGCCCAGGACTATAGAAATCACCAGTCAGAGGGCCGGTGTGAAACTCTCTTCCACAAGCAGTAGCCAAGTGCAACAGCTCAGAAGCACCCCCAACCCCCCACGCCCCCACCAGAAGCCACCTCACCCCACCCTCCATGCTCAGCTCTGCTTCCGGACCTCCTCCACGGCTGGTGACCTTGgactctattggcccagggtggagtctggcctggaaactgcatttttttttttcaagaaacacagtgtttcagatgcagggggtccagggaccacaaccttgaaaaTTTGTGACCACAG--AAGAGAGGCTCTGCGCACCCAGAGAA----AGAAC--------AGGACCCTCTTGGAggcagggca-ggggctgcgggaaaacagatgaaggtacggctggaggaatcggggcaggactgcaccatggaaggaagggacat a score=546.0 s hg17.chr17_random 1704633 2 + 2618010 TT s panTro1.chr19 78854931 2 + 82489036 TT s mm5.chr11 118557376 2 + 121648857 TT a score=26369.0 s hg17.chr17_random 1704635 291 + 2618010 GAGTTGGGtcttttttctttttagagatgggctctcacccaggctggagtgcagtggcacaatcatacctcactgcaaccttgaactcctgggctcaagcaatgctcccacctcagcttcctgaatagctgggacacagaggcatgccaccatgcctggctctttttaaaaaatgtttttgtaaagaagggctctcactatattgctggacttgaactcttgagctcaatccatcctcccaccttggcctcccaaagtgctgggattgcagtcatgagccancCTTACTTG s panTro1.chr19 78854933 290 + 82489036 GAGTTGGGTCttttttctttttagagatgggctctcacccaggctggagtgcagtggcacaatcatagctcactgcaaccttgaactcctgggctcaagcaatcctcccacctcagcttcctgaatagctgggacacagaggcatgccaccatgcctggctcttttttaaaaatgtttttgtaaagaagggctctcactatattgctggtcttgaactcttgagctcaatccatcctcccaccttggcctcccaaagtgctgggattgcagtcatgagcca-ccttacttg a score=76.0 s hg17.chr17_random 1704926 2 + 2618010 GC s panTro1.chr19 78855223 2 + 82489036 gc s mm5.chr11 118557378 2 + 121648857 AT a score=20345.0 s hg17.chr17_random 1704928 86 + 2618010 CTGAGTTGGGTCTTGAGGCATGCANTAGGAGTTTCCAGGTGGGATGCAGTTGCTGGAGCTGGACCATGCAGATCCAGCTCTGGAGC s panTro1.chr19 78855225 85 + 82489036 cTGAGTTGGGTCTTGAGGCATGCA-TAGGAGTTTCCAGGTGGGATGCAGTTGCTGGAGCTGGACCATGCAGATCCAGCTCTGGAGC s mm5.chr11 118557380 84 + 121648857 TTGAGTTGGACCTTGAGTCATTTG-TAGAAGTTCCTAGGTGGGAGGTGGTCTTGGGCTATGGGTCACTCAAACCTAGCTCT-TAGC s canFam1.chr18 28766930 80 + 66173745 ctgagctgggtcttaaggcacgag-cgggagtttctaagtgg--tggggttgtggggaagg---cgtcccTATCTGGCCCTTGAGC a score=0.0 s hg17.chr17_random 1705014 44 + 2618010 TCACAGTAATGTTCATAAACAAATGGTTTTGAGCCTTACGTGAG a score=8090.0 s hg17.chr17_random 1705014 38 + 2618010 TCACAG----TAATGTTCATAAACAAATGGTTTTGAGCCTTA s panTro1.chr19 78855310 38 + 82489036 TCACAG----TAATGTTCATAAACAAATGGTTTTGAGCCTTA s mm5.chr11 118557464 42 + 121648857 TCACTGTTCATAATGTTCATAAACAAATGATTTTGTCCCTTA a score=451.0 s hg17.chr17_random 1705052 6 + 2618010 CGTGAG s panTro1.chr19 78855348 6 + 82489036 CATGAG a score=12595.0 s hg17.chr17_random 1705058 129 + 2618010 CCAGGCCCAAGACTGGGCATTTTCTCATGTGTTTTCTAATGCACTTGATNAACTGATCTTATTCTCCC---------------------------------------------------------------------------------------CCGGGGACTCTGGGTGCAAGG-AGACATTCTGGGCTTCATCCCACCATGAAGACCAAAAAAC s panTro1.chr19 78855354 128 + 82489036 CCAGGCCCAGGACTGGGCATTTTCTCGTGTGTTTTCTAATGTACTTGAT-AACTGATCTTACTCTCCC---------------------------------------------------------------------------------------CCGGGGACTCTGGGTGCAAGG-AGACATTCTGGGCTTCATCCCACCATGAACACCAAAAAAC s canFam1.chr18 28767010 216 + 66173745 CCAGGCCCCATGGCGGGCACTTTCTCCTGGGTGTTCTCCTCCCCTTGGC-AACAGGCCTCTTACTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCCCACCCCACGCCCGCCCGGAATGCTCACTGCAAGATAGACCTCCGAGGCTCCATCCCACCTGCTGGACTGAAGATC a score=17302.0 s hg17.chr17_random 1705187 100 + 2618010 ATCCNTGAGGGCAGGCTTGGCATCAAATCCNTCCTCCTGCCACTCCAGGAGCCGAGCGCAGACCTTGCTGCAGCCAGGAAAATAAATAATAGTTGACCAA s panTro1.chr19 78855482 98 + 82489036 ATCC-TGAGGCCAGGCTTGGCATCAAATCC-TCCTCCTGCCACTCCAGGAGCCGAGCACAGACCTTGCTGCAGCCGGGAAAATAAATAATAGTTGACCAA s mm5.chr11 118557538 96 + 121648857 ACCCCTGAGGGCAGTCTTGGCATCAAATCCTTCCTA--GCCATGTGAGGAACCCAAACTTATCCTTGCTTCAGCCAGAAAA--GAATAATAATAAACTGA s canFam1.chr18 28767226 91 + 66173745 ---CTCCAGGGCAG-CTCTGTGCAAAACCC-TCGGGCTGC--TCCCAGGGACAAGCACCAGGCCTTCC--CAGTCAGGAAAATAAGTAATAGCTGATGGG a score=14399.0 s hg17.chr17_random 1705287 156 + 2618010 GGTACTGACCACCCTCACCCCAGGTTAGGAAG-AACCTGCAAGCCAATTTCTCTTTGATGTGTTGAGCTATAGCCCACCCCACACCCCCTTCACTGCT--GTTTGCTTCCCTAAAAATGAATAGCACTCTGCAGGTATCCCCACCCTTAAGCACANGCC s panTro1.chr19 78855580 155 + 82489036 GGTACTGACCACCCTCACCCCAGGTTAGGAAG-AAACTGCAAGCCAATTTCTCTTTGATCTGTTGCGCTATGGCCCACCCCACACCGCCTTCACTGCT--GTTTGCTTCCCTAAAAATGAACAGCACTCTGCAGGTGTCCCCACCCTTAAGCAC-GGCC s canFam1.chr18 28767317 129 + 66173745 ----TTTATCAACCG-GCCCTAAATTAGGAAGCCATCTGCAGGC--------------TCTGCT---------CCACCCCCACTCTGCTGTTGCTGTTTCATTCGTTTCCCCCAGAAGAGAAGGGCCTGCCCAGG--ACTCTGCCCCGAAACCCAGGCC a score=16003.0 s hg17.chr17_random 1705443 187 + 2618010 CTCCCCCAAGAGACCTGTCCTGAGCTTGGACCTGGGTGATATAACGAGACCCATCCTGAGCTTGGACCTCGGCAATATAGTGAGACCCCATCCTGAGCTTGGACCNTGGGCCATATAGCGAGATCCCGTCCTGAGCTTGGACCTGGGCCATATAGTGAGACCNCCATCCTGAACTTCGACCTGGGCA s panTro1.chr19 78855735 185 + 82489036 CTCCCCGAAAAGACCTGTACTGAGCTTGGACCTGGGTGATATAACGAGACCCATCCTGAGCTTGGACCTCGGCAATATAGTGAGACCCCATCCTGAGCTTGGACC-TGGGCCATATAGCGAGATCCCGTCCTGAGCTTGGACGTGGGCCATATAGTGAGACC-CCATCCTGAGCTTCGACCTGGGCA a score=12063.0 s hg17.chr17_random 1705630 195 + 2618010 ATATAGCGAGATCCCATCCTGAGCTTGGGCCTGGGCCCTATAGCGAGACCCCATCCTGAGCTTGGACCTGGGCCATATAGTGAGACCCCGTCCTGCACTTGGACCTGGGCCATATAGTGAGACCCCATCCTGAGCTTGGACCTGGGCCATATANGTGAGACCCCATCCTGAGCTTGGACCTGGGCCATATAGTGA s panTro1.chr19 78855920 120 + 82489036 ATATAGCGAGATCCCATCCTGAGCTTGGGCCTGGGCCCTATAGCGAGACCCCATCCTGAGCTTAGACCTGGGCCATATA---------------------------------------------------------------------------GTGAGACCCCATCCTGAGCTTCGACCTGGGCCATATAGTGA s rn3.chr5 98508705 194 - 173106704 ATATACCAGGGAGCTAGCCTGGGCTCTGGCACATGACATATACCAGGAAGCTAGCCTGGGCTCTGGCACGTGACATATACCAGGAAGCTAGCCTGGGCTCTGGCACGTGACATATACCAGGAAGCTAGCCTGGGCTCTGGCACGTGACATATA-CCAGGAAGCTAGCCTGGGCTCTGGCACATGACATAACATGA a score=8821.0 s hg17.chr17_random 1705709 74 + 2618010 GTGAGACCCCGTCCTGCACTTGGACCTGGGCCATATAGTGAGACCCCATCCTGAGCTTGGACCTGGGCCATATA s panTro1.chr19 78855851 74 + 82489036 GCGAGATCCCGTCCTGAGCTTGGACGTGGGCCATATAGTGAGACCCCATCCTGAGCTTCGACCTGGGCAATATA s rn3.chr5 98508784 74 - 173106704 CCAGGAAGCTAGCCTGGGCTCTGGCACGTGACATATACCAGGAAGCTAGCCTGGGCTCTGGCACGTGACATATA a score=9035.0 s hg17.chr17_random 1705825 99 + 2618010 GACCCCGTCCTGAGCTTGGACCTGGGCCATATAGTGAGACCCCGTCCTGAGCTTGGACAGTTCTTTCAGGGCATAGCAGTGCTCAAGGGTGGGGAACTT s panTro1.chr19 78856040 99 + 82489036 GACCCCATCCTGAGCTTCGACCTGGGCCATATAGTGAGACCCCGTCCTGAGCTTGGACAGTTCTTTCAGGGCATAGCAGTGCTCAAGGGTGAGGAACTT a score=4271.0 s hg17.chr17_random 1705924 24 + 2618010 AAGGAACTGCCTGGGAG---GGGGCAT s panTro1.chr19 78856139 24 + 82489036 AAGGAACTGCCTGGGAG---GGGgcat s galGal2.chrUn 26665400 27 - 165033910 AAAGGACTCCCCGAGAGCCCGGGGCGT a score=18839.0 s hg17.chr17_random 1705948 207 + 2618010 TAGAGctggggctaccataacacaggactgcacactggcggccacaaacaacagcatgaatcctcttgcgctgcggcaggctgccgtctgagtctgggtgtggactcc-gcaggtgggcttcttctgggggctctgagcgaggatccgccccagggctctcctggctttaggtgctctcctgagtgtccgtggcctgtggctggctca s panTro1.chr19 78856163 208 + 82489036 tagcgctggggctaccataacacaggactacacactggcggccacaaacaacagcatgaatcctcttgcgctgcagcaggctgccgtctgagtctgggtgtggactccggcaggtgggctttttctgggggctctgagcgagaatccgccccagggctctcctggctttaggtgctctcctgagtgtccgtggcctgtggctggctca a score=27021.0 s hg17.chr17_random 1706155 220 + 2618010 ccccagccaagtgctgtcttctccctgtctc-tccacatcaccngtcccctgtttgtgcctctgtgtcctgatt-tacccttcagataaggacaccagtccntgttggat--tagggccccc----------catcccctctgagaagaccctgtctct----aaggtcacattctgaggtcccggaggttaggacgtcaacatggctttttgggaggacatgattcagcccGAATGG s panTro1.chr19 78856371 220 + 82489036 ccccagccaagtgctgtcttctccctgtctcgtccacatcacc-gtcccctgtttgtgcctctgtgtcctgattgtacccttcggataaggacaccagtac-tgttggat--tagggccccc----------catcccctctgagaagaccctgtctct----aaggtcacattctgaggtcccggaggttaggacgtcagcatggcttttggggaggacatgattcagcccGAATGG s canFam1.chr18 28767576 216 + 66173745 CCCCCCCAAAACACACCctccccactctgcc-ctcccatcggc--tccccag--tatgcatgtggagcccaaatgtccccttctgataaggacaccagtcc-tatcggatggtgatgacttcattttagctgcatcccc---gtgagcaccctgtttccgaagaaagccacgttctgaggtcctagggcttgggactccatcgcgactttttgaggggacacaat------------- a score=4239.0 s hg17.chr17_random 1706375 42 + 2618010 GTAGCCTCTTCCCTCCCAATCTCC--TCCCTGCTGCCTGCCCAG s panTro1.chr19 78856591 42 + 82489036 GTAGCCTCTTCCCTCCCAATCTCC--TCCCTGCTGCCTGCCCAG s canFam1.chr18 28767792 16 + 66173745 ------tcTTCCCTCC----------------------GGCCAG s galGal2.chrUn 26665448 44 - 165033910 GCAGCCCTTTGCAGCCCCAGCTCCATCCCCTGGGGGCTGCGCTG a score=0.0 s hg17.chr17_random 1706417 3 + 2618010 GNC a score=300.0 s hg17.chr17_random 1706417 1 + 2618010 G s panTro1.chr19 78856633 1 + 82489036 G s canFam1.chr18 28767808 1 + 66173745 G a score=0.0 s hg17.chr17_random 1706418 2 + 2618010 NC a score=-4631.0 s hg17.chr17_random 1706420 155 + 2618010 TCCTGGAGCTTCCCTGGGACGCCCTGGGGGCTGTA--------------CCAGAAATGCACGGGGAGGAGCT-GGGACCCCCTGGAAGGGACCCTGGAGAACGGCAGTGAAGAGGNGGTCACATGCACCCCGACANCCCNTCCACACACNCNCNCAATACCCCCATGTGG s canFam1.chr18 28767809 115 + 66173745 CTCCGGCGCTCCCCTGGGAGGGCCCGCGAGCCACATGCAGCTGTCAGAGCCAGA-------GGGAAGGAGCCAGGGATGGCCCACAAGGGGCCC--GAGGAAGGCAGTGGGG---------------CCCAGACAGGCT------------------------------- s galGal2.chrUn 26665492 132 - 165033910 -CCCGGTGCCCTCACATCA----CCGCCATCTCCGCTC-----------CCTGCGGTGCC-GGGGGGGCACA---GACACCTCGGTGGGGACGTTTCAGATGGGCAGTGAGAGGACGGGGGAAT-------GAGAGCGT-----------TGTGTGCCATCTCGATGCGT a score=1494.0 s hg17.chr17_random 1706561 14 + 2618010 ATACCCCCATGTGG s panTro1.chr19 78856864 14 + 82489036 ATACCCCCACGTGG s galGal2.chrUn 26665610 14 - 165033910 CCATCTCGATGCGT a score=62351.0 s hg17.chr17_random 1706575 246 + 2618010 ---GTTTGGCCTGCATCGTCCCACCAT-----------GGGGGGTCTGTCCTTCCAGGTCTCGGCAAGGNCCCAG-GCATGCTGGGGAGGGCTGTCAGTTCAATGGTG-GACACCAGCGTTTGATGTGGAGA-TTTGGCAGTGAGAACGGATGTGCCTCAGTGCGAGGTTTATATAAAATGACAGATTCT--GGAAAATGAAGCCCTCAGATTAAAAAAGAAGAAGAAAANGGAAAGAGG----AGGAAGA----------GGCAGCAGGGAAGGTGCC s panTro1.chr19 78856878 244 + 82489036 ---GTTTGGCCTGCATCGTCCCACCAT-----------GGGGGGTCTGTCCTTCCAGGTCTCGGCAAGG-CCCAG-GCATGCTGGGGAGGGCTGTCAGTTCAATGGTG-GACACCAGCGTTTGATGTGGAGA-TTTGGCAGTGAGAACGGATGTGCCTCAGTGCGAGGTTTATATAAAATGACAGATTCT--GGAAAATGAAGCCCTCAGATTAAAAAAGAAGAAGAAAA-GGAAAGAGG----AGGAAGA----------GGCAGCAGGGAAGGTGCC s canFam1.chr18 28767924 266 + 66173745 ---GCTGGGCCTGCTCAGTCCCTGCATGACCCTGCATGGGAGCGGCTACCTTTCCAGGCCT----GAGG-CCCAGCGCCAGGTGGGGACAGCAGTCAGTTCCATGGAG-GACGCCAGTGTTTGATATGGAGATTTTGGCAGTAAGAATGGATGTGCCTCAGTGAGAGGTTTATGTAAAATGACAGCTTTTGGGGGGAATGAAGTCGTCAGATTGGGggaaaaaaggaaggaagaacaagg----aggaagagaaggaaggGGGCCACAGGGAAAGTGCC s galGal2.chrUn 26665624 238 - 165033910 GTATTTATATCCTTCCCGACGCAGCAT---------------------CCCTTT---GTAACGGCGCGG-AGCAC-GCA---TCGGCAGGGCTGTCAGCTCGGCGGCATGTTACAAGTGTTTGATATGGAGATTTTGGCAGTGGGAATGGATGTACCTCACTGAGAGGTTTATGTAAAAGGACAGCTTCT--GGAAAACGAAGCACTTAGATTAAGGAGGGAAAAAAAATAAAATAAAAGTACAAACAAAA----------GGGAGTGGGGGGGGTTCC a score=50465.0 s hg17.chr17_random 1706821 421 + 2618010 CTCCACC-----------------NCCCCATGTATTCCC-----------TGGAGGGCACTGCAG-----GGGCGGTGGGGGACCGGGAGACAAATGCCCCATTTGGGGGTGCTTCCTGTGCTGCTCAGTGTGCCTTAGCT--TTGCCCCANACACCGCCTC--------CCCAC-------CCCCCAGGCCACACACTTCT---TTACCATCCCCATCCGTCCTATACCCAGGATAAGAACCCCAGGGGNACAAGGCCCTGATAGGGGACAGACACGCGCCAAGATAGCACGCGGTAAGAGACAANGCAATTATTTGGAAACTTTCACATTACTGTCGTTTTAAAAGGGAGGGGGCTAGATGGAGGCAAAGACTCCAA-GAATCCTTCCTAGGAAGCCCACAAAAGCAAAGATGGATTGCACATANATTGCCCTTTGTTTAAAANGNGCACNNATNNGGATATTCCTGCAGAGC s panTro1.chr19 78857122 410 + 82489036 CTCCACC------------------CCCCATGTATTCCC-----------TGGAGGGCACTGCAG-----GGGCGGTGGGGGACCGGGAGACAAATGCCCCATTTGGGGGTGCTTCCTGTGCTGCTCAGTGTGCCTTAGCT--TTGCCCCA-ACACCGCCTC--------CCCAC-------CTCCCAGGCCACACACTTCT---TTACCATCCCCATCCGTCCTATACCCAGGATAAGAACCCCAGGGG-ACAAGGCCCTGATAGGGGACAGACACGCGCCAAGATAGCACGCGGTAAGAGACAA-GCAATTATTTGGAAACTTTCACATTACTGTCGTTTTAAAAGGGAGGGGGCTAGATGGAGGCAAAGACTCCAA-GAATCCTTCCTAGGAAGCCCACAAAAGCAAAGATGGATTGCACATA-ATTGCCCTTTGTTTAAAAGGCACA------TGGATATTCCTGCAGAGC s canFam1.chr18 28768190 383 + 66173745 TCCCACCCCTAGCAGAGCACCCCCTCCCTGTGCAATGCCTGAAAGGTGGGTGGGGGGCACAGCAGTCCCTGGGCTGTGGGGCCCCCAGAGAGAACCCCTGCATCTGGAGCTGCTTCCTCCTCCCTTCCATCTGCCCCACCTGCCCCCCCCA-GCCCCGTCTCATTCCCCTCCCCCGGCGCTGCCCCCAGCACACATACCCCTCACTCACCGTCCTGATCCCT----GAGCCGGGATGAGGACCCCAGGTG-AC-AGGCCCCGGGCAGGGACAGCCACACACTCAG-----------------------------------------------ACTGT-------AAAGG---------------------AGACTCCACTGAGTCCTTCTTGGGAAACCCACAAAAGCACA---GGATTGCACATA-ATTGCCCTTTGTTTAAGAGGCAAA------TGAATATTCCTGCAGAGC a score=0.0 s hg17.chr17_random 1707242 9 + 2618010 TGGAAACTC a score=291.0 s hg17.chr17_random 1707242 3 + 2618010 TGG s panTro1.chr19 78857532 3 + 82489036 TGG a score=1448.0 s hg17.chr17_random 1707245 6 + 2618010 AAACTC s panTro1.chr19 78857535 6 + 82489036 AAACTC s mm5.chr11 118560649 6 + 121648857 AAACCC a score=157815.0 s hg17.chr17_random 1707251 1000 + 2618010 ATTCTTCACAC------AAAAAAGCTTCCAAAAATTGCAACCTATTTGTTGCCAAGTTTGGGACTGTTATTTCCTTCCCAGCCCCCTTGGGTTGCTTTTTTATTTTTTAANTGACCTGAAATGTAAATTGCCTTCCCTGTGGGTCTCCTGGGGCTGGGATGAGGTCTAGGGAAGTCCGCCTC------CCAGGACATCCCAGCTGG---------------GGCTNCCTCCAGGAAAGGAGGCGGAAAATCCAGGATACCAATGAAGTTCATTCTGGCCACCTGGCACCGAAAGTGGAGCAAGAGACCAGACCTCNTTCCCCTGCCTTCTC-CCTGGATGCTGCGTGTCCACCTCCTGGCGTTCAGATGGCCCCTTTCTCACCANGAACGAAAAGGAGAAAGCAAGGACATCAGCTCAGCCCTGGGGTAAGAGTTCTCATCACC-ACAAGGCCCA------GGAGGACAATATCAAACACAGCCAGCATGGACCCCACCCCAAATCTCAAAGAAATCTTCAATGAACCCCA----AGAAGGGGC-CTCAAGAC-TGCAGCCAACTTCTCAGAATTCCCCAAGCNATCCAGCCTCTCANGGAGCACAAAAGAAGCCTGTGAGCAGCTTCCCAG------------------------CCCTCGGAGGGA---------------------------------CGAGAAGTTCCCN-GTGTCTGCCGGGGACCCTGGGAGCAGGGAGCTGTCGCCGCCCCTTCCTCC-------------------------------CAAGCCTG--------------CTCACTGTTCCAGAAACAAGGAGTCCAGGA-GAAGAGCCAGGATGGGGGAATAAAGGTTTCCATGAGGGGAG-ATCCCAGAGAGGCCCCCTGAACCTGGCAGTCACGTGGTCCCGGGGGTCGGCACCCATTGCCATGTGTCCCCCCT--------GGCACAGGTGTCGCTGGGGGCCAAGGCTTCAGAAGTTACTGCTGGAATGAGCCCACCTGCCTCGGGGGCTTCCTTCATCTCAAAACTCAGAGTGT-TGTCACAGCCACGCTGCCACTCTAGAATTCCTGGGGAC------AGGAGACACACCATGGCCAGGACCAATCCTGGCACCAAAAAGGAGAAC s panTro1.chr19 78857541 993 + 82489036 ATTCTTCACAC------AAAAAAGCTTCCAAAAATTGCAACCTATTTGTTGCCAAGTTTGGGACTGTTATTTCCTTCCCAGCCCCCTTGGGTTGCTTTTTTATTTTTTAA-TGACCTGAAATGTAAATTGCCTTCCCTGTGGGTCTCCTGGGGCTGGGATGAGGTCTAGGGAAGTCCGCTTC------CCAGGACATCCCAGCTGG---------------GGCT-CCTCCAGGAAAGGAGGCGGAAAATCCAGGATACCAATGAAGTTCATTCTGGCCACCTGGCACCGAAAGTGGAGCAAGAGACCAGACCTC-TTCCCCTGCCTTCTC-CCTGGATGCTGCGTGTCCACCTCCTGGCGTTCAGATGGCCCCTTTCTCACCA-GAACGAAAAGGAGAAAGCAAGGACATCAGCTCAGCCCTGGGGTAAGAGTTCTCATCACC-ACAAGGCCCA------GGAGGACAATATCAAACACAGCCAGCATGGACCCCACCCCAAATCTGAAAGAAATCTTCAATGAACCCCA----AGAAGGGGC-CTCAAGAC-TGCAGCCAACTTCTCAGAATTCCCCAAGC-ATCCAACCTCTCA-GGAGCACAAAAGAAGCCTGTGAGCAGCTTCCCAG------------------------CCCTCGGAGGGA---------------------------------CGAGAAGTTCCCA--TGTCTGCCGGGGACCCTGGGAGCAGGGAGCTGTCGCTGCCCCTTCCTCC-------------------------------CAAGCCTG--------------CTCACTGTTCCAGAAACAAGGAGTCCAGGA-GAAGAGCCAGGATGGGGGAATAAAGGTTTCCACGAGGGGAG-ATCCCAGAGAGGCCCCCTGAACCTGGCAGTCACGTGGTCCCGGGGGTCAGCACCCATTGCCATGTGTCCCCCCT--------GGCACAGGTGTCGCTGGGGGCCAAGGCTTCAGAAGTTACTGCTGGAATGAGCCCACCTGCCTCGGGGGCTTCCTTCATCTCAAAACTCAGAGTGT-TGTCACAGCCACGCTGCCACTCTGGAATTCCTGGGGAC------AGGAGACACACCATGGCCAGGACCAATCCTGGCACCAAAAAGGAGAAC s mm5.chr11 118560655 942 + 121648857 GCTTTCCACACACACAGAAGTAAGCTTCCAAAA--------TCAGTCATTGCCAAGTTGGTGGCTG------CCCTCCCAGCCCCT-------------------------CAGCTGGAAAAGTACACAGTAGTATCTGACAGAC-----------AGCTATGGTCCAGGGTTGTCTACCTC------GTGGAACCTCCCAGCTAGTGTGGGACAGGAGACTGTT-CCTCCAGGAAGGAAGGCTTGAGGTCACGG-------TGAAGGTCACTTGTGAGGAGGCACACTGCAGGTGGAGCA--GGTTCAGGCTG--TCCACCTG---TCTC-ACCAGATGCTCTGTGCCTGGCCCTCAGAGTCC--ACTGATCCTTTCTAACTA-GAAGAGACGTAAAACACCAGGAATATTGGCACATCCCTGAGAGAAAATGTCTCTTTGTAGACCAGCTCTATCTGAGAGAGAAGGACATCAGGGA-------CATGG-------CCCAAATCTCGGGGCCATCTTTAAAAAGCCTCT----GGGAG-----CTCAAGGC-CGCAAGTGGCTTGCTAGACCCAACTAGGC-ATTCAGCCTTCCA--CAGCACAGA--CATTCAGTGAGCAGCTTGCCTGTGCACGACCCCCATCACCACCTTTCCCTCACAGACACATATCCCTTCTGATACCTGAGATGGCATCCTTCAAGAATCTGCCA--TG-CTACTGAGGCCTGTGGGAACAGGAAGCTGTCCTCTGTCTTTC-------------------------------------------------------------TTGTTCTAGAAGCAAGGCACCCAGGA-AAGCGACC---------------CCCCCCCCATGAGTGAAG-ATCTGGGAGACACCCAGAGACCCTG----------------GGGGCTGGATATCCAGTGACACATGCCCCCCCCCCCCCAGAAGCTCAGGTATATCTAGGGACCAGGGCTCTAGAAGTCATTGCTGGAGTGAGCTCATCTG-TTTGGGGGCTTCCTCTGGCTT---GCTTGGG-----TACCACAAGCAATCTGTCAGTGCAGTCCTCTAGAGGAC------AGAAG-CACACCACCTCCAGGACTGTCCC--ACACTAGACAGAAGAGC s canFam1.chr18 28768573 980 + 66173745 GTTCTTCACAC------AGATAAGCTTCCAAAAATTGCCATCAATTTGTTGCCAAGTATGGGACTGTTACTTCCTTCCCAACCCCCTCGGATGTTTTCTGTGC--------CCGCCTGAACTGCAAACTGCCTTCCCTGGTGGCCCTGTGGGG------------CTAAGGCAGGCCACCTCATCCCGCCGGGCTAACGGAGCTGG-----------------CT-CCGCCAGGAAGGAAAAGTGAAGGTCAAAGATACTGATGAAGGTCACTTCACGCATGCAGCACCCACAGTGAACCAGGTAACAGGACCT--AGCACCTG---TCTCACCTGGATGCTTCATCTCTGTTCCTGGGCGTCCAGAAGGCCCCTTGCTCACCA-CAAGGGAAAGGCGGACACGGGGACACCCACCCGGCCCTGGGAGAGAGGTTCTCGCCATGACCCAGGCCAC------AGAGGGGGA------------CTAGTACAGACCCCACCCCAAACTTCACGGAAATCTCCAGTGAACCTCTGATGAGAAGAAGTGCTCAAGGCAGGGGGCCAACTTGCCAGAAATCCCCGGG--GTCCCACCTCCCA-GAGGCACAATGTAGGCCT-TGGCCAGCTTCTGAA----------------------------------GA---------------------------------CAAGACACTTCCAAAGGCATTGCTGGGCTCCTGGAAGGAGAGAGGTGTCCTCTGTCCTTCCGCCAGGTGAATTTTCAGGACACGGTAGCATCTTGCAGGCCTGGCTGTCCCCATGCCCCCACTCTGCTGT----------CCCAGGACAAGGATCCAGGGCTGGGGATGAAGTCCTACCATGAGTTATGCACCCAAGAGAGAC-------ACCTAGC-----CGGAGTCCCTGTTGCAGGCAGCCACAGAGGTATGCCCACCAT--------GG---------GGGCAGGGGCCAGGGCTTTGGGAGCTCCTGCTGGAATGAGCCCACCTGCTCCAGGGGCTTTGTTTTTCTTCCAACTGGGAGTATCAGTCACAA-CACTTTGTC-TTCTGGAATACTTAGGGATGAGGTGGGGAGGGATGCCATCCCCATGGCCACTCCTGACACCAAAAAGAAGAC- a score=46377.0 s hg17.chr17_random 1708251 367 + 2618010 CCCCAGCCAGGCTGCGCCCATCCGATGGACA-------------CCAGACTCCTTGGTACac----atttattgggcacctactngtgttccaggcacagcctgaagtgATAAAAGCCAGGCACAGCGCCAAAGGTCCCAGCAGAAGGTGGCGGCCACCCCCAACCCCCAGCCCATCCCCGTCTTTCCTTCCTCTTGGGCCTCCTGTCCCCTCTGGAATTCAGCCCCAAACAGTATCGTGTTTTCTGTTGGGTCACCGCCTTTGCTTGGAGCCCCTGAAAACAGAGCCTGGGGCAAGGGTTGGGGCACAGATTGCTGGTTTGAGAGCAAGTCCAGGAAGCTGGTGTGAGGTTATCTGGGAGCCT--GATGAGGATGGAATAAAAGC s panTro1.chr19 78858534 366 + 82489036 CCCCAGCCAGGCTGCGCCCATCCAATGGACA-------------CCAGACTCCTTGGTACAc----atttgttgggcacctact-gtgttccaggcacAGCCTGAAGTGATAAAAGCCAGGCACAGCGCCAAAGGTCCCAGCAGAAGGTGGCGGCCACCCCCAACCCCCAGCCCATCCCCGTCTTTCCTTCCTCTTGGGCCTCCTGTCCCCTCTGGAATTCAGCCCCAAACAGTATCGTGTTTTCTGTAGGGTCACCGCCTTTGCTTGGAGCCCCTGAAAACAGACCTTGGGGCAAGGTTTGGGGCACAGATTGCTGGTTTGAGAGCAAGTCCAGGAAGCTGGTGTGAGGTTATCTGGGAGCCT--GATGAGGATGGAATAAAAGC s canFam1.chr18 28769553 312 + 66173745 ACCCAGCCAGGCTCCACCCATCAGAGAGGCAAGGATACCTGTGTCCAGactcattggcccacagatatttgttgagcacctact-gtgtg--------agccccaagcaatgAAAGCC---CAca----------tccca------------------ctcca--tcccactccatcccactccgtc---ccactcAG---TCCTG----CTCCTGAATCTAGGCCTCAACAGTACTGGGTATTCTGTGCAGTCACTGCGCTAGCTAGGAGCCCCTGAAATACAGCCCCGGGACAGGGTTTGGATC-TAAGCGACTTGTCTGGGA-CTGATCCAGGA-----------------TCAGGGGCCTGAGATGGGGACAG---AAGGGC a score=57505.0 s hg17.chr17_random 1708618 683 + 2618010 tatgtgtgcacgtatggagggtgtgaggaggggtgtgcacgtgtggagggtgtgtggaggggtgtgcacgtgtggagggtgtgtggaggcatgtgcacgtgtggagggtgtgtggaggggtgtgcatgtgtggagggtgtgtggaggggtgtgcatgtgttgtgtgtggcatgtgtaaacgtgtgcacgcatgtggtatgtgcagtgtgtgtgtgtggagtgtggagtattgtagtgtgtgcacacatngcatgtatgtgtatgtgtgtgggtgtgtgcaggggtggagtattttgtgtgcacatatgcatgcatgtgt----------gtgtgtgtagtgtgtgtggaatgtgaagtattgtcgtgtgtgcatgcatgcatgtgtgtgtgtctgcagggtgtggagtactgtcgtcgtatgtgcacacatgcatgcatgtgtgtgtggggtgtggagtattgtcgtctgtggatgcatatatgcatgtgtatgtgggt-ggggggtgtggaantattgttgtgtgtgcacatatgcatgcctgtgtatgtgtgtggtgtgtgaacatgtgcatatgtaaatgagtgcatgtgtgtggtgtgtgcagtgtgtgatatgtgtggaatgtgtagtatgtgcacacgtgtgcatgtgtggtgcgtgcatatgtgtgtggacaggtgtgcatgtgtgt s panTro1.chr19 78858900 681 + 82489036 TATGTGTGCACGTATGGAGGGTgtgtggaggggtgtgcacgtgtggagggtgtgtggaggggtgtgcacgtgtggagggtgtgtggaggggtgtgcacgtgtggagggtgtgtggaggggtgtgcatgtgtggagggtgtgtggaggggtgtgcatgtgtggtgtgtggcatgtgtaaacgtgtgtacatatgtgatatgtgcagtgtgtgtgtgtggagtgtggagtattgtagtgtgtgcacacat-gcatgtatgtgtatgtgtgtgggtgtgtgCAGGGGTGGAGTATTTTGTGTGCACATATGCATGCATGTGTCTCTCCCTCCG--------GTGTGTGCGGAATGTAAAATATTGTCGTGTGTGCATGCATGCATGTGTGTGTGTCAACAGGGTGTGGAGTACT---GTCGTATGTGCACACATACATGCATGTGTGTGGGGGGTGTGGAGTATTGTCGTCTTTGGATGCATATATGCATGTGTATGTGGGTGGGGGGGTGTGG-AGTATTGTTGTGTGTGCACATATGCATGCCtgtgtatgtgtgtggtgtgtgaacatgtgcatatgtaaatgggtgcatgtgtgtggtgtgtgcagtgtgtgatatgtgtggaatgtgtagtatgtgcacacgtgtgcatgtgtggtgtgtgcatatgtgtttggacatgtgtgcatgtgtgt a score=23487.0 s hg17.chr17_random 1709301 172 + 2618010 agtgtgtgcatgtgtacgtgcgtTTATGCAGTGTTATTGAACAGGTCACCCTGTGGGCAACTGGAGCTGGATCCA-TGGGGACCTTCCAGGTCACCCCGTGGACTG--CCTGTCCCTGGGA--------AGGCTGGGGCAGGGAGTG-GTTCCCTCCCCACACTNCCCA-------------------------------CCTGCGCTGTGAACA s panTro1.chr19 78859581 171 + 82489036 agtgtgtgcatgtgtacgtgcgtTTATGCAgtgttattgaacaggtcaccctgtgggcaactggagctggatcca-tggggacctTCCAGGTCACCCCGTGGACTG--CCTGTCCCTGGGA--------AGGCTGGGGCAGGGAGTG-GTTCCCTCCCCACACT-CCCA-------------------------------CCTGCGCTGTGAACA s canFam1.chr18 28769865 208 + 66173745 AGTGTGTGCGTGTGTA------TTCATGTGGTATTGGTGAACTGTTCACCCTGCAGGTAACTGGGGCTCAGTCTGTTGGGGATCTTCTGGGGACACACGAGGATTGACCCCAGCCTTGTGAAGGTGGAGAGGCTGGGACGGGGGTAGCATTTCCACCCCATGTC-CCCAGTGACAGAGCGCTGTCTGGGTGCATTAAGTCTCCACACTGTGGCTG a score=10494.0 s hg17.chr17_random 1709473 122 + 2618010 CACT-----------------CCCTCCTCTCCC--ACTGAGTT-----------GAGCCCAGG---------------------------------ACTGC--GGGCTCAGGAC--------------ACCAGGACTCTCCCAGGGACAGCCAC-TCCCAAGGTGGCCCCAGCAGGCCCAAGCCAAGGCTGTCGTCTGTTTC s panTro1.chr19 78859752 122 + 82489036 CACT-----------------CCCTCCTCTCCC--ACTGAGTT-----------GAGCCCAGG---------------------------------ACTGC--GGGCTCAGGAC--------------ACCAGGACTCTCCCAGGGACAGCCAC-TCCCAAGGTGGCCCCGGCAGGCCCAAACCAAGGCTGTCATCTGTTTC s canFam1.chr18 28770073 199 + 66173745 CTCCATTAGCCGCCTGGGCCGCCCCCCACCCCCAGACAAAGCTTGGGGGCAGAGGAGCTCAGGTAGTCAAGGCGGGGGCCACCAGCATGCAGGGGAACTGA--GCACTCATGGCCAGTGGGAGCTGGGCCCAGAGGCCTCCAGGGGACACTCGT-TCCCAAGGTGGTCCCAGGAGGCCCAAAACAAGGTGGTTGCCTATTTC s galGal2.chrUn 26666843 116 - 165033910 CCCT-----------------CCAGCACATCCA--CCTCGGCT-----------GTCCCCAGC---------------------------------ACTGCTGGGACGCAGCGC--------------AGCGAGA-------AGAGGCAGCTGCATCCCAGCAGCGCCACACACAGCCCC--TCAGCTCCATCCCCAGCCCC a score=1157.0 s hg17.chr17_random 1709595 5 + 2618010 AGACT s panTro1.chr19 78859874 5 + 82489036 AGACT s galGal2.chrUn 26666959 5 - 165033910 AAACT a score=0.0 s hg17.chr17_random 1709600 6 + 2618010 GGGCAC a score=300.0 s hg17.chr17_random 1709600 3 + 2618010 GGG s panTro1.chr19 78859879 3 + 82489036 GGG a score=873.0 s hg17.chr17_random 1709603 3 + 2618010 CAC s panTro1.chr19 78859882 3 + 82489036 CAC s mm5.chr11 118561744 3 + 121648857 CAC a score=3570.0 s hg17.chr17_random 1709606 41 + 2618010 TGCGGCATGGGGCCCTTGACAGGGAAATGTACAGCAGTCCT s panTro1.chr19 78859885 41 + 82489036 TGCAGCATGGGGCCCTTGACAGGGAAATGTACAGCAGTCCT s mm5.chr11 118561747 34 + 121648857 TGAGGAATA----CCTAGAGAGAGGCACCCACAGC---CAT s galGal2.chrUn 26666964 30 - 165033910 TGCAGCATCCTCCCC-----------ATCGATAGCATCCCT a score=7857.0 s hg17.chr17_random 1709647 295 + 2618010 GGCGCATCCCAAATGTTCTCTATG--------ATGGCA-----GCACCTTA---------GACTTCATCCCACAGCCA--------TGTGCTCCCCTGCCCCTTC----TCCCTGCCCAGAAGGAACCTGGCAC--A-CCCAC---TACCCC-----ACACCCCTGCTTCCATG----GCCCCCTGCACTCC-------------------TGACCTGGCAGACCCCAAACCACAGTCTGCTTAGTGGCAGCAACCACCGGGTGAAAAGC----CTGAGTGCTCGGAGGT-----------GGGGGTCAGGGAAGNGCAGCCCACACTGGGCTCTTGCC----------------------------ACTCTCGGGGGACAGAAGTGGGTGGCAGCTGCTCCAGGG s panTro1.chr19 78859926 294 + 82489036 GGCGCATCCCAAATGTTCTCTATG--------ACGGCA-----GCACCTTA---------GACTTCATCCCACAGCCA--------TGGGCTCCCCTGCCCCTTC----TCCCTGCCCAGAAGGAACCTGGCAC--A-CCCAC---TACCCC-----ACACCCCTGCTTCCATG----GCCCCCTGCACTCC-------------------TGACCTGGCAGACCCCAAACCACAGTCTGCTTAGTGGCAGCAACCACCGGGTGAAAAGC----ATGAGTGCTCGGAGGT-----------GGGGGTCAGGGAAG-GCAGCCCACACTGGGCTCTTGCC----------------------------ACTCTCGGGGGACAGAAGTGGGTGGCAGCTGCTCCAGGG s mm5.chr11 118561781 345 + 121648857 GGCACATCTAGAATGCTCTCACAG--------GCAG-------GAACCTTA---------GATGGAATTAAGCAGCCA--------TTCTGTCTGCTCTCACTCC----CGCTACCCTCAATGCTTCCTGGCTCTTG-CCTACTCTTGCCCCCCATTACACTCCTGGTCCCATGCTCCTCCCCCAACACTCCCCCATCCCCCACCCCCGCTTACCCTG--AGAGTCCCACCCACAGCCGGCTCTGCAGGAGCCACTGCCTGCTAAG--------TTGGACATATAGAGAT-----------GTGAACCAGTGACAGACACCAGGCCTTGGGGTGACTCCCAGACAACCCACGTGGAGAATCACCATGACTCTCAGATAACAGGA---GGTGGGCAGTGCTCAGAGG s canFam1.chr18 28770735 230 + 66173745 GATGCACCCCAGCTTCTC-CACTG--------GCAGCA-----TCGCCTTG---------GACTTAATTCCAAGGCTG--------TG---TTCTCTGCCCCTCCCCAACCCCTGCCGGGAAGGAGCCAGGCAC--ACCCCAC---CACCCT-----GCACCCTTGCACCCCTG----------------------------------------CCACACAGCCCCCAAACCACAGCCTGCTGAGCAGCGCCAACAGCC---------------------------AGAC-----------AGGAGACATAGCTGCGGAGCC------------------------------------------------------TGGCAGAGAGGAGGGGCATTGGCCCCGAGG s galGal2.chrUn 26666994 321 - 165033910 -GCTGACCTCAGGCACCCCCTCAGCTGCTGACCCGGCACTCCTGCACCCTAACCCTACACGCCTGCACAGCACAGGCAGCAGAGCGTGGGCCCCCGTGGC-CTCA----GCCCAGGGCAGGAGAGCTGATGAAC--A-TTCAT---AAATCA-----ACATTCCCTTTTGCTTG-------CTTAAGA-----------------------TATCCTCATTTATCCCGCACCACAGGTG--TGCGCGGCACTCAGAGCCAGAGAAGCAGCCACGCTCCCTGCCAGGAGAGCTTACTTTCTAATTAGACAGATA---ACAGCAAATCATGACAACAGACC----------------------------AC-CGTGGGGAATGGAA----GGGACTGCTGCTCCGCGG a score=437.0 s hg17.chr17_random 1709942 10 + 2618010 -----AGGGGTGCAG s panTro1.chr19 78860220 10 + 82489036 -----AGGGGTGCAG s mm5.chr11 118562126 10 + 121648857 -----AGGAGCCCAA s galGal2.chrUn 26667315 10 - 165033910 ACAGCGGGAG----- a score=-566.0 s hg17.chr17_random 1709942 25 + 2618010 ------AGGGGTGCAGGTGCAGAAGAAACCC s galGal2.chrUn 26667315 21 - 165033910 ACAGCGGGAGGTTCGGGGCCG---------- a score=-990.0 s hg17.chr17_random 1709952 15 + 2618010 GTGCAGA---AGAAACCC s mm5.chr11 118562137 18 + 121648857 GTTCTGAGTCAGGGACAC s galGal2.chrUn 26667325 11 - 165033910 GTTCGGGGCCG------- a score=-2644.0 s hg17.chr17_random 1709967 240 + 2618010 --CTAAGA-GAGGAACATGTGT-----GTCCACAGCCCACTCTTGGCAGGC---AGACAC-----------CCCCAGGA-------GA-CCCCACATCCCAC------------------CAGG------ACGGACACCACCTGCC----------------------CTTCC------CTGGCAGCTCCCAATCCTCNCCNTCC---TTCTCCCAGCTCTTTTTTTGTAAACTAAGTCT-----GTTTCTGGA----GGGCGCGTCATGTGTGCACGCCTGTACATGCATGCCGAGTTTTTATTCCAATCCTTAAATGAGGTCTTTGCTGAGA s mm5.chr11 118562155 278 + 121648857 --TTAAG--GAGGACCTCATGT-----GTTGGCAGTACAC-CTTGGCAGGCCCCGCACACTGCTATCCCTGCTCCTGGATTAACCAGA-CTGCATAGCCTGCGCTGTTCCTGCCCAAGCATAGG------ACGACCCCTGCCTGCC----------------------CT---------------GCTACCAAAGCTCGCTTTCTGCTTCCCCTCCGCTCTTTTGTT-CACACCAGGTCTCCATTGTTTCTGAACACCGGCTTCTTCACGCGTGCGTGTTCGCACATGCGTGTCAAGTTTT-ATTCCGATCCTTAAATGAGGTCTTGGCTGAGA s canFam1.chr18 28770965 201 + 66173745 ---------------------------------------------------------------------CTACCCAGGA-------GATCCCCACGTCAGGC------------------CAGGGTC---AGAGTGCCCCCCCACC----------------------CTTCT------TTAGCTGCCCCCACCTCCCTCCCCCT---CCCACCCTGCTTTTTTTTT-TA-ACTAAGCTTCTTTTGTTTTTTGA---GGATCCCTTCATGTGTGCACGCCCGCACATGCATGTCAAGTTTTTATTCCAATCCTTCAATGAGGTCTTTGCTGAGA s galGal2.chrUn 26667336 274 - 165033910 TTCTGACACATACACCGCTTGTTTCACATTCATTTCCCACACCTGATAATGGGAACGCAG--------------CAGCA-------GC-CCACAC-TACAGC------------------CAGAGCCTGAGGGGAGAACATTAGCAGGAGGAGGAGAAGGGAGAGGAGCTGCTGCGGGGTAGGGGGGTCCCGGCCTCGGTTCCCTCCGTCCTCTCCAGTGTTCCTTG-GA-ACCAAACTT-----CCCCGTGCA---TGGCAGGCTGAAGCGCGTGTGTTTGCATGT---------GTTTTCAGCCCAGTCTTTAAATGAGGTCTTTGCGGAGA a score=97695.0 s hg17.chr17_random 1710207 166 + 2618010 ATTTACAATTCCCCNTGTGGCCTCAATCTTGCAAAGATTGCTTTTTTAACGCTGTTAGGCCTTAATTCTAATAAGCCTCCTCCTTATTACAGAANCCAGGTCACATTGCCTTGACACCGCCAGAAAATCTCTCAT-GGCCACGGG------AGGGTGGGC--GTGGAGAAAGGGG s panTro1.chr19 78860574 162 + 82489036 ATTCACAATTCCCC-TGTGGCCTCA-TCTTGCAA-GATTGCTTTTTTA-CGCTGTTAGGCCTTAATTCTAATAAGCCTCCTCCTTATTACAGAA-CCAGGTCACATTGCCTTGACACCGCCAGAAAATCTCTCATCGGCCACGGG------AGGGTGGGC--GTGGAGAAAGGGG s mm5.chr11 118562433 149 + 121648857 ATCTACGATTCCCC-GGTGGCCTCAATCTTGCAGAGATTGCTTTTTTAACGCTGTTAGGCCTTAATTCCAACAGGCTTCTTCTCCATTACCGAA-CCGGGTCAGTTTGCCCTGACACGGCCAGAAAATCTCCCATCGA------------------------GCGGGGAGAGGGC s canFam1.chr18 28771166 172 + 66173745 ATTTACAATTCCCC-TGTGGCCTCAATCTTGCAAAGATTGCTTTTTAA-CGCTGTTAGGCCTTAATTCTAATAAGCCTCCTCTTTATTACAGAA-CCAGGTCACATTTCCTTGACACCGCCAGAAAATCTTTCATCGGCCGGGAGGGGTCCAGGGGGGGCAGGCAGAGAGAGGGC s galGal2.chrUn 26667610 157 - 165033910 ATTTACAATTCCCC-CATGGCCTCAATCTTGCAAAGATTGCTTTTTTAACGCTGTTGGGCTTTAATTCTAATAAGCCTCCTCTTTATTACGGAA-CCAGGTCACATTGCCTTGACACTGCAAGAAAATCTTTCATCAG------G------AGGGAAA----ACAGAGAAGAGGG a score=1039.0 s hg17.chr17_random 1710373 7 + 2618010 CTGCCAG s panTro1.chr19 78860736 7 + 82489036 CTGCCAG s mm5.chr11 118562582 7 + 121648857 CTGGGAG s canFam1.chr18 28771338 7 + 66173745 TAGAAAG a score=4628.0 s hg17.chr17_random 1710380 30 + 2618010 AGAATGGGGCAGAGATCTGGGAACACCGAG s panTro1.chr19 78860743 30 + 82489036 AGAATGGGGCAGAGATCTGGGAACACCGAA s mm5.chr11 118562589 28 + 121648857 GGAA-GGCGC-GGGAGCTGGGAGAGCCGAG s canFam1.chr18 28771345 26 + 66173745 AGGAAGGGGCAGGGAGACAGAATCG----G s galGal2.chrUn 26667801 30 - 165033910 aGGACGAGGAAGACGGGTGAGACAAACAAG a score=113846.0 s hg17.chr17_random 1710410 515 + 2618010 GGAGGAATCCTTTCTTAATTCAATGCAATTCTAAAATAATCTAATTTCTGAGGACCGGAGTGGCCTCTGCTCACTTTAGATAACTTTGTGATGTGGTTGTGTCTCCTGCAAATGTTAGTTTTCTTTTTTGTGTCTTGATTTTGAAAACGACAAGAGGAGT--CGGGGAGCGACGGAACCCGA----TGGGCACACTGGGCACCAGTTCAGGCCCTGGCCTCAGGCAGTCGGTCATCTGCAGCGGCCCAACGTCTGTTCTCC------------CTGCTCCCAAGGGCCAGGAGAGGAAATTGAGAGAGTATGGCACCAGCAGGCTCCAGGACAGAAACCAAAACCCGCTGGCACTTGTTGGGGGTGGGAGGCACTTGGACCAAAGGGTTTGGGCACCTGGGGAATCCATCAGTCAAAC--TCGCTCT-----CCTCCCTCTTCCTGAGATAGCTGTTTTTAGGTTCAAGGGGATACAGAGGAAGCACGCAATTGAGGAAAATGAA-CCTGCCTCTGTCTGACTCATCAGGACAGCGCGACA s panTro1.chr19 78860773 515 + 82489036 GGAGGAATCCTTTCTTAATTCAATGCAATTCTAAAATAATCTAATTTCTGAGGACCGGAGTGGCCTCTGCTCACTTTAGATAACTTTGTGATGTGGTTGTGTCTCCTGCAAATGTTAGTTTTCTTTTTTGTGTCTTGATTTTGAAAACGACAAGAGGAGT--CGGGGAGCGACGGAACCCGA----TGGGCACACTGGGCACCAGTTCAGGCCCTGGCCTCAGGCAGTCGGTCATCTGCAGTGGCCCAACGTCTGTTCTCC------------CTGCTCCCAAGGGCCAGGAGAGGAAATTGAGAGAGTATGGCACCAGCAGGCTCCAGGACAGAAACCAAAACCCGCTGGCACTTGCTGGGGGTGGGAGGCACTTGGACCAAAGGGTTTGGGCACCTGGGGAATCCATCAGTCAAAC--TCACTCT-----CCTCCCTCTTCCTGAGATAGCTGTTTTTAGGTTCAAGGGGATACAGAGGAAGCACGCAATTGAGGAAAATGAA-CCTGCCTCTGTCTGACTCATCAGGACAGCGCGACA s mm5.chr11 118562617 477 + 121648857 CTCGGAACCCTCCCTTAATTCGATGAGATTCCGGAATGATCTAATTTCTGGGAGCAAGCGTG--CCCTGATTACTGCGGATAACTTCATGATGTGATTCAGTCTCCGGCAAACACTCGTTTTCTTTTCTGCGTCTGGGTTTT-CAAGCGACGGGA-------TGGGGATGGCTGGTACACAGACTCTCATCGCACCTGGCTCAGGTTCAGATCCCGGACGTGAACAGAAGGTCATCTTTCCTGGCCCGGTGCCTGTCCCAC--CATGGCAGGTCCGGTCTTGAGGGCCAGGAAAGGAAATTGAGAGAGGACAGAAGTAGCAAGCTCCCGGACATAAACCAGTTCCCTGCAGAACC--CCAGGGCTCCAAGGCG-----------------GAGCACCT-CAGAATCCATCCATCAA-------------------CCCTCCTCCTTAGTCAGCAGCTTTGAGGTTCAC-AGGACAGAGAGGAAGCAGGGGGTGGGGGAAAAT--------TCTCTGTTCACATCCCCAGGAC----CAAAG s canFam1.chr18 28771371 509 + 66173745 AGAGGAATCCTCCCTTAATGTGATGGAATTCT-AAATAATCTAATTTCTGGGAACCAGGGTG--GCCTGACCGCTTTAGAGAACTCTGTGATACGACTGCGTCTCCTACCAGCGTCAGTTTTCCTTT-TGTGTCTTGATTTGTCAAGTGACAAGAGGAGGGAGGGGCAGCAACGGGACG-GC----TGCCCGCGCCAGGCACGCATCCAGGCTCC-GCCCTGGACAGACGGTCATCTGCTCTGGCCCAGCACGTGTCCTCCGGCCAGGCGGCTCCGGTCCTGAGGGCCAGCAGAGGAAACAG---GGGAACAGCACCAGCAGGCTCTAGGACAGAAACCAAACCC-------ACT--CAGAGG---AGAGGCAC----ACCGGTGGGTGTGGATACCT-GGGAACCCGTCAATCAAACCATCCCTCTTCCGGCCTCCCCGCTCCTTC-CCAGGGGGGTTTGGGGCCAC-GGCCGGGGGAGGGGGCATACTGCTGAGGATCACCAAGCTTATCTCTACCTGCCTTCTCAGGACAAAAGGACA a score=3915.0 s hg17.chr17_random 1710925 26 + 2618010 GTCCCTCCTGCATTCTCAcaacattg s panTro1.chr19 78861288 26 + 82489036 GTCCCTCCTGCATTCTCAcaacattg s mm5.chr11 118563094 26 + 121648857 TCCCCTCTCACATCCCCGAAACACAA a score=13858.0 s hg17.chr17_random 1710951 115 + 2618010 attaagcgcctactctgtgccagggagtgGAGAGGTGGGTCCTCCTGACCCACNTTNCNNCACTGNAAGTAGAA-GAATCTCAGAG-CTAAGGGCTGAGACGGTGCTAGAATGTTCT s panTro1.chr19 78861314 114 + 82489036 attaagcgcctactctgtgccaggGAGTGGAGAGGTGGGTCCTCCTGACCCACCTT-CTCCACTGGAAGTAGAA-GAATCTCAGAG-CTAAGGGCTGAGACGGTGCTAGAATGTTCT s mm5.chr11 118563120 107 + 121648857 AAC-AGCAGATAC-----AACAGAGAGGTCGGGGCCATGGCCCTCTG-CCCGCTTC---TTGTTGAGAGTGGAAGGGATGGTGGAGCCTAAGCACTGAGACCATGCCAGAGCATCGT s canFam1.chr18 28772086 111 + 66173745 GTTAAGCAACTACTATGTGCCATAG----CTGGGCAAGGTCCCTCCCCACCACTGCTTGTCACTGGGAGTGGAAGGAGTCCAAGAG-GGAAAGGCTGACAT-GTGCCAGAACGGCTC a score=-31.0 s hg17.chr17_random 1711066 1 + 2618010 T s canFam1.chr18 28772197 1 + 66173745 C a score=91.0 s hg17.chr17_random 1711066 1 + 2618010 T s panTro1.chr19 78861428 1 + 82489036 T a score=11255.0 s hg17.chr17_random 1711067 198 + 2618010 TAAAACCCTTGGAAACTTTCGAGACTGAG-GGGTGAGTCC-AGAAACAAGGTCTTTCTTCTAGAAGATTCTGCATA-------------------------------------TGGAG--------------------CTGTGGAGACGGCACTCTGCGGGGCAGCAGGGACAAACAAGAAGTGGAAGACACAGCCCTGACCCTCTGGA----------------------------------------------GGCACCCAGGCCAT----------------------AGCA---------------------------------------------AGGAAAGAGATGGAAATGGCTT----GCTGTCCC- s panTro1.chr19 78861429 198 + 82489036 TAAAACCCTTGGAAACTTTCGAGACTGAG-GGGTGAGTCC-AGAAACAAGGTCTTTCTTCTAGAAGATTCTGCATA-------------------------------------TGGAG--------------------CTGTGGAGACGGCACTCTGCGGGGCAGCAGGGACAAACAAGAAGTGGAAGACACAGCCCTGACCCTCTGGA----------------------------------------------GGCACCCAGGCCAT----------------------AGCA---------------------------------------------AGGAAAGAGATGGAAATGGCTT----GCTGTCCC- s mm5.chr11 118563538 366 + 121648857 TTAAAACTGTGAGAGCATTAAAGACTAAA-AGAAGAGACCTAGAGGTAAAACTGACATTCTAGAAGGTTCTGCGTAGAGCTGTGTAGAGAATAGGATGCAGGCAGCAGGATCCTGGAGAGGGCGGAGAGGGAAATAGCCTGTGGGGCCAGCATTTAGTGGGTGAGCCAAGTCGAGCAACCAGGAGCAGGCC---CTCTCATTTTCTGGGTGAGATAGTAAATATTAACCAGGTGTCAAGCAGGTGTTCAGCAGGTGTCAGCCAGGCCCTCTCCCACAGGCCAACCTTAACAAGCATCTGTATTAAGCCTCTGACTTCCTAAACATCAGTTACTGCTACTCAGGACAGAGAGGGAAACGGCCT----GTGGGGCC- s canFam1.chr18 28772198 127 + 66173745 ----------TAAAACCTCCAAGACTGAGCATGTGCACCT-AGGAATAAGGCCTTCACTCTAGAAGGTTCTGCACA-------------------------------------TGGAGG-------------------ACGTGGGG-----------------------------------------------------------TGGG-------------------------------------------------------GCCTG----------------------CGGA---------------------------------------------AGGATGGAGAATGAAATGGACCCGGAGAGGTTCTC a score=16362.0 s hg17.chr17_random 1711265 154 + 2618010 CAGATGCTCCTGTTCA-CACCACCAGCCAGCCCC-CTCCAGGCTCTGCCTCCCACATGCTGACTTCAGAAGC----TGTCCACTCCAGGGCCACCCGGGGCC------------------TAAATCCGGCCGTGCAGCCCGG----------CCCCTGCGCAGGGAGGACTCGAGCCACACAAACCCA s panTro1.chr19 78861627 153 + 82489036 CAGATGCTCCTGTTCA-CACCACCAGCCAGCCCC-CTCCAGGCTCTGCCTCCCACATGCTGACTTCAGAAGC----TGTCCACTCCAGGGCCACCCGGG-CC------------------TAAATCCGGCTGTGCAGCCCGG----------CCCCTGCGCAGGGAGGACTCAAGCCACACAAACCCA s canFam1.chr18 28772325 182 + 66173745 TGGAAGCTTCTCTCCCTTGTCACCAACCAGCCCCTCTCCAAGACCTGTCCCCCTCAC----ATGTCAGCAGTGGGGCGTTTACATCAAGGCAGCACGGGACCCCGGGCCACCACGGTGAACAAAACCACCCGAG--GCCTGGGGCCGTGGGACCTCCGAACCGTGGGAAGACACGTCCTGCACAGCCA a score=48485.0 s hg17.chr17_random 1711419 198 + 2618010 GCA--CCTCGAGGTTCTTGTTCCTGTCCCTGGGACTGCAGGACCCAACAGCACTCTTCCTCGAGGGCAGTGTGAGCAGAGCCANANTTTTTTAAATACAGAACTGTACATCAATGTGACGTCTAACATAAGGCACCTTATAAATCAGAGGCCATTTTTTAAAACTTGGAT------------------GTGAAAG-GTTCTGGTGTCCAGGGGCTGAGG s panTro1.chr19 78861780 196 + 82489036 GCA--CCTCGAGGTTCTTGTTCCTGTCCCTGGGACTGTAGGACCCAACAGCACTCTTCCTCGAGGGCAGTGTGAGCAGAGGCAA--TTTTTTAAATACAGAACTGTACATCAATGTGACGTCTAACATAAGGCACCTTATAAATCAGAGGCCATTTTTTTAAACTTGGAT------------------GTCAAAG-GTTCTGGTGTCCAGGGGCTGGGG s mm5.chr11 118564153 212 + 121648857 GCA--CCGGGAGGGCCTCGCTCCAGTCGATGAGCCTGTGGGACCTGACAGAGCCTTTCTAGGAGGGCAGTGTGACAGCAGTCAG--TGATTTAAATATAAAA-TATAAATGGATGTGGTATCTAGTGTTGGG-GCTTTAGCCACTGAAGGTCATGCTTTAAGCTTTCAACCGAGGAACACTGTGTCCAGTCTCAG-GTTCTGATGTCCAGAGGCCAGAG s canFam1.chr18 28772507 194 + 66173745 GCAAGCCTGGCGGCCCTC-CTCCTGCCCCTGAGCCTGTGTGACCCCACGGCGCTCCTCTGGGAGGGCAGTGTGAGTGCAGCCAA--TGGTTTAAATATAAAA-TTTAAATCGATACGATGTCTCATGTAAGGCACCTTAGAAATCAAAGGT-ATTTTTTTAAACTTTGGT------------------GCCAAAGAGCTCGGGTGCCCA--GGCTGAGG a score=71027.0 s hg17.chr17_random 1711617 723 + 2618010 GTGTAGGCAGCTGCGAGGCCTTCCANGGGGCACCCCTGAACATNACAAGGAAGCACCCACTNCAGCGCTTCCCCACCCTCGGCATGCCCCGGAAGCCACCCTCAGAAGCCTCCACTGGGAATTTCTGAGTTTTCACGTGTGGTTCCTCTTATCC-TCCATCCCCTGTGGGTGCCACACAGAGGGCCAGAAGGTTTGCATTTACTGGGTCCCCAAAGAGGAGACCAGACTGGACCATGTTTGGCACAAGTGCTGACCAAGAACGGAGCCCTGAGGACACGCCCTCAGAAGACGCTGATCCCCTCCCTGGGATGACGCTCCCCATCCCACCCTTANGAGTAACAGCAGGAATGACCCCCACCCCCNGCCTGG-----AGAGCCATCGGTATTGAGAGAAACGAGCCACTTTCCAGGTGTGCCGAGGCTGACCATAATNGGGGCCACCAAGGTGCAAGGTCAAGCTTGCCAGAAAGAAACCGGCACGCAGACACGCAGCTCCCTGGAGAGCAGACTTGGGTCCCCAGCCCAGGAACTTGATCCTCCCACTGAGGCCCACCGTGCCCCAGCGAAGAACATGCtcagtcagcaac-cgctcgctgggcacctgctttgtgccaggcactgggctaagcactgagaataccagatgaagacgagacagTGCA--------CCAGGTCCACACNGCTTTAGGATTAAATCACACTGACGGTTCTGCCGTCTTTCTTTTCCACGAA s panTro1.chr19 78861976 713 + 82489036 GTGTAGGCAGCTGCGAGGCCTTCCA-GGGGCACCCCTGAACAT-ACAAGGAAGCACCCACT-CAGCGCTTCCCCACCCTCGGCATGCCC-GGAAGCCACCCTCAGAAGCCTCCACTGGGAATTTCTGAGTTTTCACGTGTGGTTCCTCTTATCC-TCCATCCCCTGTGGGTGCTACACAGAGGGCCAGAAGGTTTGCATTTACTGGGTCCCCAAAGAGGAGACCAGACTGGACCATGTTTGGCACAAGTGCTGACCAAGAATGGAGCCCTGAGGACATGCCCTCAGAAGACGCTGATCCCCTCCCTGGGATGACGCTCCCCATCCCACCCTTA-GAGTAACAGGAGGAATGACCCCCACCCCC-GCCTGG-----AGAGCCATCGGTATTGAGAGAAACGAGCCACTTTCCAGGTGTGCCGAGGCTGACCATAAT-GGGGCCACCAAGGTGCAAGGTCAAGCTTGCCAGAAAGAAACCGGCACGCAGACACGCAGCTCCCTGGAG--CAGACTTGGGTCCCCAGCCCAGGAACTCGATCCTCCCACTGAGCCCCACCGTGCCCCAGCGAAGAACATGCtcagtcagcaac-cgctcgctgggcacctgctttgtgccaggcactgggctaagcactgagaataccagatgaagttgagacagtgca--------ccaggtccacac-gCTTTAGGATTAAATCACACTGACGGTTCTGCCGTCTTTCTTTTCCACGAA s mm5.chr11 118564365 619 + 121648857 GGACAGTCAG-TACCAGGTCTTCCC-GGGAGAC-----------ACCAGGAAGATCT-----CAGCGCTG--CCATCCTTAGTCCACCTTGACAG---CCCTCAGAA--CCACACCAGCACCTCCAGGGTTTCCACAAGCCATTCCTTCTAACCGTTGATGCCCTGTGGGTTTCACAC--ACTACCAGAGGGTTTTTGCTCGCTGTGTCCCTGAAGAAGACACCAGGCTCTATAACA-TCAGCACATGT-------AATAATACATCCC--------------------------ACCCCCTCC--AGAATAACA-----------ACTGCTACTGTTGTCTGGAGGTATCA------------GCCTGGAAGATAGAAACAGCACCCCCAAAACAAACAAACAAA--AACAGATAAACAAAGACTGCCC--AAT-GCAGCAACCAAGAGGTAAACTCAA-CTAGACCGTAAAGATCAAACACGGAGACATGTGGGCTCCCAGAG--CAGA-TCCATCCTGCAGGCCTGGAGATCGTTTCTCTCACCTAGGCCTCCCTAACCCTAACCCTAACTCTGAGT-GTCCCCAACTTGCTCACTTGGCATTGACCATGTACAGAGCACT--ACCAGGCCC---AAATACAAGATGAATGCAGGACTACACACATTAATTCAAGGTCTGAAT-GTTAAAGCATGGAGAC-CACTAA----------GGCTTCCCTTTC------ a score=260106.0 s hg17.chr17_random 1712340 1316 + 2618010 AATGGACTGTGGGT--CTCTTTCCACATCCATGGAAAGCAGCTGCCTAAAACCCACCGTGTGTATGAATAGGCCATTCTCTCTTGAACGCTTTTAACCAATCCCCTGCTGCAGGGAGTGTGTTAGCAGCGGGGAGACC--TGTGGGAAGTGGCATGCCAGCCGCGCAGAGGGGA-----------------GGACGGACCTGGCATCTCCCTCTAAGCCAGCCGCCAAGTCACGAGGGGCTCCTATGCATTCCAAAAACCCTCCTAGAGGAAGAGCAAGGTGGCAGCCCTTGGCCCAT-GGGCAGCAGATTCTTGGATTCTGCAAAA-CATAATTGTGAAGCCCAATCTGCCAGCGGAGAAATATGCAGCGCATTCACAGGCTAAATATAAATAATATTGATTCATCTGCCATCTTGAATTATCCATTCCACTTCTGTTTTCCATTAGCATCAATAATCACGAGCGTA-CTCCCCTGTGGACGGGGTACATTACGCTCCGAAGGATGCAGCTGGCCCCAGGGTCACACATCTGGAGGAGCCTCAGGATATCTTCCAGAATTATCT-GGCATCTTCTAGAGCAATCCAGAACCTTC---------CTGG-------------------------TACTTTTTCCTCCCTCT-TATCTACTCCTCATTCCAAGCCCAGGAAAGAGGGGTGGCTCAAAGAGACATCTGAGA---CCCCC-CTTTCAGAGGCAGTCTGCTTTATTTGGCAGCTGACTCTGGTTNCTGGGAANACAATT-GCACACGCTCCAAGGTTCACTTCCAAGGAAGGAGGGGAAGAAGCTCCTGGGGCTG---ATGCAGAGCCCAACTGAACCCTCAGGG---------------------------------CAGAACCAGGGCCCATTTCCTCTCTGGGCCAGAAACCACAGTGGCTTTCCTGCAGATCAGCGGGGTCCTTGTTCCTCTGACAGCCCTCTGCCCCCAGGCCCTGGGGCTCTCTGATCAGCAGGCAGAGAGTGTGCC--CAGCACCAGCCAGGGGTGGGCCAGGGCCTCCGGCACACCCTCCTACCCNNCTTCTCAGT----------GGNNAGCCTCT-AGAGACAGAAAT----AACCAAGGCACGNGAAACCCACCAGGGCCACCCACC-GTGGGCCCAGCCAGGCCACAGAGCTAATGAGCCACAAAGTCCCCTGCCCCCCAACCAGCTCTCAGAATNtcaacnaanatgttgattgagaatggactatgagcagacagccatgctaggtgctctgggaagacatggatcagctgcagcccctgcccgcgaagcacttgcagcccaatacgggagatggagctgcagac--GCCCATCAGGATCTGTGATTTTTTGCTCTTCCTTCTCAGTGCTGATTACAGCTCCCNAGAANAGTGCTATG s panTro1.chr19 78862689 1304 + 82489036 AATGGACTGTGGAT--CTCTTTCCACATCCATGGAAAGCAGCTGCCTAAAACCCACCGTGTGTATGAATATGCCATTCTCTCTTGAACGCTTTTAACCAATCCCCTGCTGCAGGGAGTGTGTTAGCAGCGGGGAGACC--TGTGGGAAGTGGCATGCCAGCCGCGCAGAGGGGA-----------------GGACGGACCTGGCGTCTCCCTCTAAGCCGGCCGCCAAGTCACGAGGGGCTCCTATGCATTCCAAAAACCCTCCTAGAGGAAGAGCAAGGTGGCAGCCCTTGGCCCGT-GGGCAGCAGATTCTTGGATTCTGCAAAA-CATAATTGTGAAGCCCAATCTGCCAGCGGAGAAATATGCAGCGCATTCACAGGCTAAATATAAATAATATTGATTCATCTGCCATCTTGAATTATCCATTCCACTTCTGTTTTCCATTAGCATCAATAATCACGAGCGTA-CTCCCCTGTGGACGGGGTACATTACGCTCCGAAGGATGCAGCTGGCCCCAGGGTCACACATCTGGAGGAGCCTCAGGATATCTTCCAGAATTATCT-GGCATCTTCTAGAGCAATCCAGAACCTTC---------CTGG-------------------------TACTTTTTCCTCCCTCT-TATCTACTCCTCATTCCAAGCCCAGGAAAGAGGGGTGGCTCAAAGAGACATCTGAGA---CCCCC-CTTTCAGAGGCAGTCTGCTCTATTTGGCAGCTGACTCTGGTT-CTGGGAA-ACAATT-GCACATGCTCCAAGGTTCACTTCCAAGGAAGGAGGGGAAGAAGCTCCTGGAGCTG---ATGCAGAGCCCAACTGAACCCTCAGGG---------------------------------CAGAACCAGGGCCCATTTCCTCTCTGGGCCAGAAACCACAGTGGCTTTCCTGCAGATCAGCGGGGTCCTTGTTCCTCTGACAGCCCTCTGCCCCCAGGCCCTGGGGCTCTCTGATCAGCAGGCAGAGAGTGTGCC--CAGGACCAGCCAGGGGTGGGCCAGGGCCTCCGGCACACCCTCCTACCC--CTTCTCAGT----------GG--AGCCTCT-AGAGACAGAAAT----AACCAAGGCACG-GAAACCCACCAGGGCCACCCACC-GTGGGCCCAGCCAGGCCACAGAGCTAATGAGCCACAAAGGCCCCTGCCCCCCAACCGGCTGTCAGAat-tcaac--aaatgttgattgagaatggactacgagcagacagccatgctaggtgctctgggaagacatggatcagctgcagcccctgcccgcgaagcacttgcagcccaatacgggagatggagctgcagac--GCCCACCAGGATCTGTGATTTTTTGCTCTTCCTTCTCAGTGCTGATTACAGCTCCC-AGAA-AGTGCTATG s mm5.chr11 118564984 1200 + 121648857 --------ATAAAC--GTCCTTCCACAGCTATCTATAGAAGCTGCACTAAGCCCACCGTACATACGAGGCCAGCATTCTGCC----ATACTTTGAAC----CCCACCCTATGGTGAACATAATCA-AGCGGACAGACCATTGTGGGAGATAGTGTGCCAACCAGACAGTGAAG------------------GCACGGGCCGG-----TCCCTCAGTGCA-----------CACATG------CTGTGCATCCTGAAAACCTTCTCGGAGGGAGTGAAAAGCTATAGACCCTGGACTGTGGGGCAGCAGCATCTCAAATCATGCAAAAGCATAATGGTGAAGGCCGACC--ATTACGGAGACATCAGCAGTACATGCGCAGGCTAAATATAAATAGCATTGATTTGTCTGCCATCTTGAATTAGTCATTCAACTCCTGCACTCCGTCAGCATCAATAATCATGAGCGAG---TCCCTGAAGAAAGGAT---------------GGCTGCAGTCAGTCCCATGGGTGTGCACCTAGAAA---TTCTGGAAAGCTTCCAGAACATTCTCAGCATCATCTTGAGCAATCCATAACCCTCTGGAGCAATCTGGAGCCTTCCAGAGCAACCCGGAACCCTACTAGCTCCTCCCTCTCCATCTGCTCCTCACTCCAAACCCAGGAAGGAGAGCAAGCTTACAGATAGACCCAAGAGGCCCTCC-TCCTTGTAAGTGTTCCGC--TGTTTGGCAGCTGATCTTGACT-CCAGGATGATTTAT-AAACCCACTCCCAAGTTCTTGTGCAGGGATGACAGCAAGGAAGGTTATATGGTGG---CTGC-------------------------------------------------------------------TCCATTTCCTTCCCAGACCAAAGATGCAAGGAGCTTCTGTATAGACCAGCAGGGGCCATG----TCTTACAGCGGTCCTTCTCCAGGATCCATGACCCTT--ATCAGAAAGTTTTG-GAATGCT-GTAGCACCAGGCAGGGATCTG--AAGTACACACACACACACACACACAC-------CAGT----------AG--ATCCCCTGAGCCACTGAAATGGGAAGACCAGGGACAAGACATCCCACAGGGCCACCTGCC-AGAGAGCCAGATAGTT--CAGAGTTCAGAGGCCACAAATG-------GTCTCATTCGGCTCCCAGAAT-CTCAC--TAACACTGACT-------------------GTAGACCTTTGAAGGGCTCTGA--------AGATCCGCCATGGTTCCTGCCTGCTTGCTGCCTGCTAACAAGCTAAAGAGACAGGTGCACAAAC--ACCCACCC-AATCTGTCACCTTCCATTTTTCCCCACCAGTGCTGAATTCGGCTCCC-AGAAAAG------- s canFam1.chr18 28772969 1286 + 66173745 AACAGACTGCGGATACATCCTTCCATGCTCGTCTACCGCAACGGCACGACACCCACCG----TCTGGGTAGACCATCCCCTC-------------------------GTGCAGGG-GCTTCTCAGCAGTGGGC-GGCC--TAGGAGAGGCGGCGTGCCCACCACACGGCGGGGAGAGGGTGGCACTGGGCGGGATGGG-CTGGCACTTCACTCTGCACCTGCCGCCAAGTAACGCGGGGTCCTTGTGTGTTCCAACAACCCTCCTAG-GGGGGAGCAAGGTGGCAGCCCTTGGCCCGC-GGACAGCAGATTCTTGGATTCCACAAAA-TATAATTGTGAAGACCAATCTGCCAGCAGAGAAATATGCAGCATATTCACAAGCTAAATATAAATAATATTGATTTGTCTGCCATCTTGAATTATCCATGTCACTTCTTTTTTCCATTAGCATCAATAATCACGAGCTGACCCCCCCTGTGGAT-GGCCACGTTGCCCTCTGAAGGACACAGCCAGCCCCAGGGTCATGCACCGAGAGGAGTCTCAGGCTGCCTTCCAGAATGGCCT-GCCATCTTCTAGAACAGTCCAGCACCTTC---------CTGG-------------------------GAATGTTTCCTCCCCAA-CAACTACTCCTCACTCCAAGCCCAGCAGTGAGGGGCAGCTTGAAGGCACATCTGAGA---CCCCCACTTTTAGAGGCATTCTGTTCTCTCTGGCAGCCGCCCTTGCTT-CTGGGGAAGCAGGTGGCACACAGTCCAAGGTTCACTCC---GGCTGAAGGAAAGGGAGCTGATATGGCTGGATATGC--AGCCCAACCAAACCCGCGGGGCATCGCCTCACACTTGCCAACCATCCCCAGGGCCAGAACCGGGGCCCGTTTCCCGTCCGGGCCAAGAACCTCAGTAGCTATCCTACTGATCAGCAG------------CCCCACCACCA-CCACCACCAGCCCCAG-----------------GGCACAGCGTGTGCCCACAGCA-TGGCCGGGAGGCGGCCCAGGCCTCCTGCCTGCCCTCCCTCAC-------CGGCAAGACACCCCGG--GGCTGTT-AGCAACAGAAA-----GAACAGGGCAT--GGAACCCACACAGGCCGCTCGCCAGCCAGCCCAGCCAGGATGCAGGGTGCCCAGGGCACGTGGCCC-----ACCCCGGCCAGATGTCAGAAAGCCCAC--AAACACCGACCGAGAACCTACCGCGAGGAGATAACTGTCCCGTGTGCTTTGC----------AGGagacggggtccctgccttcgaagcatttac-gatcgacgggggagacagatgtgcaaacTTACCTACCGGGACCTGTCATTTCTCATTCTTCCTCATCGGGGCTG-TTATAACTCCC-AGAGAAGTGCCATG a score=22200.0 s hg17.chr17_random 1713656 218 + 2618010 GGAAGCAGGTGCTGACATCAG--GCCCA-GAGGGAGGCTNTTGTGGATGCTTC-TCATGTCCTCTGCGTGCCTGTCTACGTCAGTACGTCCCACTTGCTCA-CCGCCTTAGATACACCCAGTGATAACCTATGGCTTC-GCTATGTTCCG-TGTTGATAGAAGGATCCAAAA--CCTTCCCGTTGGCCTTCACCGTCTACTTAACGAGCCACGCCCCTCCTAGGACA s panTro1.chr19 78863993 217 + 82489036 GGAAGCAGGTGCTGACATCAG--GCCCA-GAGGGAGGCT-TTGTGGATGCTTC-TCATGTCCTCTGCGTGCCTGTCTACGTCAGTACGTCCCACTTGCTCA-CCGCCTTAGATACACCCAGTGATAACCTATGGCTTC-GCTATGTTCCG-TGTTGATAGAAGGATCCAAAA--CCTTCCCGTTGGCCTTCACCGTCTACTTAATGAGCCACGCCCCTCCTAGGACA s mm5.chr11 118566184 162 + 121648857 -------AGTGCTGAGGACAGTCACCCATAAGGAAGGCC-CTGTGTGTCCTTC----------CTGC----------------AGATGTCCTACATGGCTA-CTGCTGTGCATACAGCCACAAGTCACT---------------------------GTAGAAG--TCCAGACCTCCTTCCCGTT-GCTATTGTCACTTACTTAGCATAACAAGCAGCTCCCATGATG s canFam1.chr18 28774438 199 + 66173745 AAAGACAGGGACGGA---CGG--AGCCATAAGGAGGGGTTCTCAGGATGGCTCTTCATGTCTTCTGTGTGAAAGTACAC----CAACATTCCCGATGCCCACCCACCCTGGACACGGC-----------TGTAGCTGCAGCTCTGCCTCGAGGCTTGTGGAAGGATCCAGAA-GCTCCCCCATTTGCCTTCACCATCTACCTCGCCAGCCAAGC-------AGGGCA a score=94964.0 s hg17.chr17_random 1713874 875 + 2618010 CCGCAAGAGAAATGCTGGGGTCACCCCTGGCCGAGGCCTCCCTCCTGCTGGCCACACGTAAGAAAGGACTTNCACAAGGGAGACCTCCGTNGGCTGCCACACACATTCACCCCAAATGCTTCCTGGAGAAAGCACATGCCCTCACACTGTGAGCTCGTGAGTTTGCCAAAAAGGAGATGCAGGAGCCTGAGATCACCTCCTGTCTTGCTGCTAAAATATCCCAGCCGNTGGAAAAGCAAGGCTGGCCTCAAATTGGGGAATCTGGTCTTGCCAGCCCAGCTGTGCTCCAGGGACTCCGGTTTGCATTGGGAATGAGAGAGTGTTGGCCGGGTAAGATGGCAAGACAGACACAGTCCTCCTACAGACTTGTAGAAGGGCTTTC--TGCCCGCCCCCACCCAGGG--CAGAAAGAGGAGGCACANGGGGAAAACAACAAGAGNCCCTGGCCAAGAATGAGCCCTCTGCCGTCGTCCTGTGT------GTGGCCTTGTGGCCCAGCACCAGCGCTGGGGGNGCACTTTGCCCTGCCTGACNAGGAGGAAGGGATGCCCTAGT-GAGGTGGGAAACAGAGGGA----GAGGTTGAGACCACCTTGGACAAGAAGGGCCAGGGAAGGCCCTCCNTCACCTGTCA-CTACAGCCCGACACTTAGAAGGTACCGCCTGATTTCAGCCTCTGCATCCACGGTCA------CCTACTTAGTACCCCCCATAGGTANGGGGTTGGCTCCTGCCTTTCCCAGGAGGGAGGACAGACTCACCCTGTGGCCAGCAGGGAGCAGACACCCCCA--AAAGCCACTGGGGCTGCAGGGCCCCCAAAGTGGAAATGACCTGCCACTCTGTCCATCCCATNGGGGGNAGAAACAATCAGACCCTA-GGCAGGGGGCAT s panTro1.chr19 78864210 864 + 82489036 CTGCAAGAGAAATGCTGGGGTCACCCCTGGCCAAGGCCTCCCTCCTGCTGGCCACACGTAAGAAAGGACTT-CACAAGGGAGACCTCCGT-GGCTGCCACACACATTCACCCCAAATGCTTCCTGGAGAAAGCACCTGCCCTCACACTGCGAGCTCATGAGTTTGCCAAAAAGGAGATGCAGGAGCCTGAGATCACCTCCTGTCTTGCTGCTAAAATATCCCAGCCG-TGGAAAAGCAAGGCTGGCCTCAAATTGGGGAATCTGGTCTTGCCAGCCCAGCTGTGCTCCAGGGACTCCGGTTTGCATTGGGAATGAGAGAGTGTTGGCCGGGTAAGATGGCAAGACAGACACAGTCCTCCTACAGACTTGTAGAAGGGCTTTC--TGCCCGCCCCCACCCAGGG--CAGAAAGAGGAGGCACAA-GGGAAAACAACAAGAG-CCCTGGCCAAGAATGAGCCCTCTGCCGTCGTCCTGTGT------GTGGCCTTGTGGCCCAGCACCAGTGCTGGGGG-GCACTTTGCCATGCCTGAC-AGGAGGAAGGGATGCCCTAGT-GAGGTGGGAAACAGAGGGA----GAGGTTGAGACCACCTTGGACAAGAAGGGCCAGGGAAGGCCTTTC-TCACCTGTCA-CTACAGCTCGACACTTAGAAGGTACCGCCTGATTTCAGCCTCTGTATCCACGGTCA------CCTACTAAGTACCCCCCATAGGCA-GGGGTTGGCTCCTGCCTTTCCCAGGAGGGAGGACAGACTCACCCTGTGGCCAGCAGGGAGCAGACACCCCCA--AAAGTCACTGGGGCTGCAGGGCCCCCAAAGTGGAAATGACCTGCCACTCTGTCCATCCCAT--GGGGGAGAAACAATCAGACCCTA-GGCAGGGGGCAT s mm5.chr11 118566346 712 + 121648857 CTCCGTGAGAGGTGTACAAGCCAGCTTGGGCCTCACTCTCCTACCTTCCAGCCAC---------AGGACCT---------------------------------ATACAACCCAATTGTTTCCTTCAGAAAATGC-TGCC------------------------ACCAAGATGGTGACACAAGAGAGTGTGTTCGCCACCTG-CTTGCTGCTGAGGTGTCCCTGCTG-AGGAGAAACAAGGCCAGCCCAAG---GCGTAACAGGAGCCTGCTGGTAC----------------CTCAAGTTTGTGCTAGCAATGAGTGAGGGCTGGCT-ATTGAGCAGATGAGAGGTATACGGGTCTTCAGCAGACTGG--AGAAGGCTTTCGGTACCTGGCCCTGCTCAGGGGTCAGAAACAAGAGTCACAC------------------CCCAAAC----------CCCTCTGCAGTC-CCCCATGTTACTGAGTGGCCTCAAAGCTCGGCATCAGCCCATGAGG---------------------AG--GGATGAGATGCCCCAGCAGTGGTGTGGAGTAGAAAGACTAGAAGGTT-------CTTTGCAC-AGGAGACCCCAGGAAGGCCC----TCATTTGTCACCTAAGTCCCCCTACCTGGAATGTGTCCCCTGGCTCCACCTGGTGCGCCCACTATCACACCACCCTGCTGAGTGTCCCACATGGGCT-----------------------GGAAAGAAAATCAGCTTCACCAAGTGGTCAACAGG----AAACCCCACCACCACCGCCAC-GAAACTACAGAGTCCCCAGTCCAAAAGTGACCAGCCACTCAGCCTTTCA-----GGGGAATAGGCAACCTGACTCCATGACATGGCACAT a score=94467.0 s hg17.chr17_random 1714749 692 + 2618010 TTAGGGCAAACAGCTGGCCCACAGCACGGACTCTCCTCTTTGCAGCTAATT------------TTTGGACTGCATGGGCCACATCTGGG-----------------------CCCTGGGACTTCCCATGGAGCCGCGGCAGGTAGAAGGATGG-------------------AACCCCACAATCTGAAGAGCAGA-GAGGAGCCTGATCAGAAGGAGTC-----TTGGCTTCTTTATTCCTCCTTGACCCACCCTCTTGCCACCATCCCTCACTAGCAATTCTCCCCAAAATCCTGCTGCAGAAATCTGCCTTCCAATAACATTGCCTGGGCAGAAGCCACAGGAGCAGGAGCGCTGCCTGCTGGAGGGTGACCAACAGGTGCAGGG-GCCTCAGG--TGCCACTGCCTTTACACACGTGGCCA-GTACAAAAGAGCACTCCAGGAGGAAGGTGGTGGCAATGCA-GAGATGACCGTGcacatgcacacatgcacacgtgcacacatgcacacacacactcatgcac-atgcacacacatacatgcacacatgtgcacacatacatgcacatgtgcgcgcacacacacacatgcacacgcgcacacacCCTCCTCGTTGTTAAGGACNCTTAACTTAGAATGATGTATTCTCTGTTCTCCTGGCTATAATTATTTTAGCGTGGGAGACAAATTCTGTCTCCAGCATCTCCGAAGTGCAATGTTGGAAAATCACATCCCATGGTCCTGGAAGATCCCTA s panTro1.chr19 78865074 691 + 82489036 TTAGGGCAAACAGCTGGCCCATAGCACGGACTCTCCTCTTTGCAGCTAATT------------TTTGGACTGCATGGGCCACATCTGGG-----------------------CCCTGGGACTTCCCATGGAGCCGCGGCAGGTAGGAGGATGG-------------------AACCCCACAATCTGAAGAGCAGA-GAGGAGCCTGATCAGAAGGAGTC-----TTGGCTTCTTTATTCCTCCTTGACCCACCCTCTTTCAACCATCCCTCACTAGCAATTCTCCCCAAAATCCTGCTGCAGAAATCTGCCTTCCAATAGCATTGCCTGGACACAAGCCACAGGAGCAGGAGCGCTGCCTGCTGGAGGGTGACCAACAGGTGCAGGG-GCCTCAGG--TGCCACTGCCTTTATACACGTGGCCA-GTACAAAAGAGCACTCCAGGAGGAAGGTGGTGGCAATGCA-GAGACGACCGTGCACTTGcacacatgcacacgcacacacatgcacacacacgctcatgcac-atgcacacacatacatgcacacatgtgcacacatacatgcacatgtgtgtgcacacacacatatgcacatgcgcacacacCCTCCTCGTTGTTAAGGAC-CTTAACTTAGAATGATGTATTCTCTGTTCTCCTGGCTATAATTATTTTAGCGTGGGAGACAAATTCTGTCTCCAGCATCTCCGAAGTGCAATGTTGGAAAATCACATCCCATGGTCCTGGAAGATCCCTA s mm5.chr11 118567058 491 + 121648857 ---GGGTGA--AGACTGTCTGTA-CCTGGCCTCTTCTCCATGTGGCTGGTCACATAGGTATTGTGTGTGATATATGAG-CATATATAGGAATATGCTTACACAATATAAATATCCTGGGCTCCCGCACTGAACTTCAGCAGAGAGGATCATGGTG----------------AAATCTCAT----------GCAGG-AAGAAGCCAAGCCA-AAGGGGTCCTGG-TTGGCTTCCT--------------------------------------------------------GTTCTGCCCCGGAAAGGCCTTGTCAAAGAGCACTGGCTCAGCAC-AGCTGCA-TAGCAG-------GCCTGCTGGAGCGAG-CCAACAGGTGTGGGGTGCCTCGGG--TACTATTGCCCCAGCAGGTATAATC--------------------------AGGTGCCAGCAA-GCG-GAG-----------------------------------------------TACTGAGGTACAAAGCCAACAGAGACAGCCTCACATAGGCACGT---------------------------------------------CGCCCTC----TTGTTAAAGGC-CTTAACTTA----------------GTTCTCCTGGCTATAATTATTTTAGCGTGGGAGATCAGTTCTGTCTCCAGAATC----------------------TCACACTCCAAGGTCCTGGAAAATCCCCA s canFam1.chr18 28774637 576 + 66173745 TCAGGGTGAACGCTTCGCCTACAGCCTGGGCCCTGCCCTTTTCTGCTGGTG------------T-------------------TCTGGA-----------------------CACAGAGGCT-------GAGCCT--GCAGATAGGAGAAAGGTGCCTCTGCCCATTCCGAGGGCCCCGCTCTCTGAGGGGCAGACGAAGAATCTGGCCGGAAGGAATCCCGGCCTGACTTCTTTCTCCTACCTGGGTCCACTCTTATCCCACCTTCC----CTATTGGTTCTCAAAACAATCCC-CTGCAGAAA------TTCTGATAGCATGGTCTGGGCATGTGCCATG----CAG-----------------------GCAACAGGTGCGGGGATGCTCGGGGTTGCGGCTGTTCTCACACGCCTGGCCAGGCGCACGTGTGTGCTCCCCAAAGAAGCCAGAGCCTATGCAGGAGCTGAA-----------------------GCACGCACGCGCACACTCTCTCTCTCTcac-atacacacacacacacacacaca--------------------------------------------------cacacacacTCCTCGCTGTTAAGGAC-------CCAGAATGATGTATTCTCTGTTCTCCCAGCTATAATTATTTTAGCGTGGGAGACAAATTCTGTCTCCAGTAACTCAGAAGCGCTACATTAGAATATCACATTCTGTGGTCTTGGAAAATCTGTA a score=37314.0 s hg17.chr17_random 1715441 170 + 2618010 CCTTCTCCAGCTCTTTTCC--TCC-----ACAGAGGAGCATAAACAGACCCTTCCAAGGGGTGAAC-------CT-----------------TGGAGGCTTTAATTCCTCCTCCAAGCAGCTCCACGTAGAG-CAACAGAGAC---------GCAGGGACCGTGCA----AGTAACCATGGCAACTCCA-GGAAGTTTAAAAA------AATAAGTTTTTGA s panTro1.chr19 78865765 171 + 82489036 CCTTCTCCAGCTCTTTTCC--TCC-----ACAGAGGAGCATAAACAGACCCTTCCAAGGGGTGAAC-------CT-----------------TGGAGGCTTTAATTCCTCCTCCAAGAAGCTCCACGTAGAG-CAACAGAGAC---------GCAGTGACCGTGCA----AGTAACCATGGCAACTCCAGGGAAGTTTAAAAA------AATAAGTTTTTGA s mm5.chr11 118567549 175 + 121648857 --TTCTCCAGTTCCTTCCC--TCCGTGCAAGAGCTGAGCAGGGACAGAT--------GAAGGGGGC-------CT--------------GGATGAAAGGCTTAATTCCTACCCGATG--GCTTCCCTCAGAG-CAGGAGAGACCCGGCCGCTGCACGGGCCTTTCG----AGTAACCATGGTAACTTGG-GGGAGCTTAAAAC------AATAAGTTTCTGA s canFam1.chr18 28775213 190 + 66173745 TAGTATCCCAGCCCCTTCC--TCC-----ATCCTGGGGCACAAAGAGGCTCTTCAGATGGGTGAAC-------ACACCACGGAGGCCCAGCACAGAGGGCTTCACGCCTGCTCCAAGCCGATCTACTTAGAGACCTCGGAACC---------ACA-----CATGCA----GGTAACCATGGCAACTTTGGGGAAGTTAAAAAAAATAATAATAAGTTTGTGA s galGal2.chrUn 26668780 190 - 165033910 CCCTTCCAGGCTCTGCTGCATCCC-----ACACGGCAGCACAACGGGATCGCAGCTGGGGGAGGCCGGGGCTGCT----------CCAAATGTGGATGTTTTAATTCTTAATGCCAGCAGCTGCACTTAAGG-CGCGAGCGGC---------ATGGAAGCCATGCACAGGGGTAACCATGGCAACTTCACGGAAGTTAAATAA------AA-ACTTCTTTAA a score=9891.0 s hg17.chr17_random 1715611 54 + 2618010 GT-TGTTGAGTTGTTATTTGGTGCTTA-GTGGGTTGGACTCTTGCCTTCCTTTTTG s panTro1.chr19 78865936 55 + 82489036 GTGTGTTGAGTTGTTATTTGGTGCTTA-GTGGGTTGGACTCTTGCCTTCCGTTTTG s mm5.chr11 118567724 47 + 121648857 GT---TTGGG--GTTATCCAGTGCTTC-CGTGGCTAGGTGCCAGCTTTCC---TTA s canFam1.chr18 28775403 54 + 66173745 GT-TGTTG-GTTGTTATTTGGTGCCTAGGTGGGTTGGGTTCTCTCCTTCTTTTTAA a score=15826.0 s hg17.chr17_random 1715665 28 + 2618010 AGATAAC-GAGGCCTCTGAATGGTGCTTT s panTro1.chr19 78865991 28 + 82489036 AGATAAC-AAGGCCTCTGAATGGTGCTTT s mm5.chr11 118567771 29 + 121648857 AGATAACAGAGCCCCCCAAGTAACACTTT s canFam1.chr18 28775457 28 + 66173745 AGATAAC-AAGGTCCCTGAATCACACTTC s galGal2.chrUn 26668974 28 - 165033910 AGATAAC-GAGGTCCCTGAATCATGCTTT a score=10254.0 s hg17.chr17_random 1715693 244 + 2618010 TAATNGAGCTTTGTGGGTACCGTATGGAAGG--CAGCCCGTG-----TCCCCAGA-ATCTCATGACCTTNTGAAGGGGGAANGCAAGTGTCTCATCTCAGTTCCACAGAGTCCCAGGC---AGGTCTGTCCTCAGATTAGGTTGCTC-CCTGTGGGGTGATCTTGAGCCAGTGTGGCCCCTCCCCNAANCCTTCCACCCAC-CCACAGAAGTGAGA-AGTGCTC---NCATGCCTCCCCCTCCCCAGGAGACCCAACATTT s panTro1.chr19 78866019 238 + 82489036 TAAT-GAGCTTTGTGGGTACCGTATGGAAGG--CAGCCCGTG-----TACCCAGA-ATCTCATGACCTT-TGAAGGGGGAA-GCAAGTGTCTCATCTCAGTTCCACAGAGTCCCAGGC---AGGTCTGTCCTCAGATTAGGTTGCTC-CCTGTGGGATGACCTTGAGCCAGTGTGGCCCCTCCCC--AACCTTCCACCCAC-CAACAGAAGTGAGA-AGTGCTC----CATGCCTCCCCCTCCCCAGGAGACCCAACATTT s mm5.chr11 118567800 151 + 121648857 CGG--GAGCACCGAGGGGACAGTATACAAGGAACAGCCTCTACCTGCTCCCCA------CCATGCCTTC-------------AGCAGTGTCTTACCTTGAGTACACACACACACACAC---ACACACACACACA------------------------------------------------------------CACACACACACCAAAAATAAAA-A----------CA---------------AAGAAACAAAACGACA s canFam1.chr18 28775485 220 + 66173745 TCT--GAGTGTTTTGGGTA-AGCGTCCAAGG--CAGCAGCTG-----CCTCCAGACGTTTAATTACCTT-CTGAGGGGGAA-GCACGTGTCACGTCTGAGCACCAC--TGTCACAAGTCTGGGTTCTGTCCTCAGGGCGGGTTGTTCTCCAATGGGGTGACCTTGGGCCAGCGTG---------------------------CCTCCCGAGTGTCACAGTGCCCCTCTCAGCACTGCTCCTCCCTAGAAGTCTGGAGACTA a score=0.0 s hg17.chr17_random 1715937 30 + 2618010 ACAGGAACTCTTACAGTGCCCAGCTACTCT a score=1446.0 s hg17.chr17_random 1715937 5 + 2618010 ACAGG s panTro1.chr19 78866257 5 + 82489036 ACAGG s mm5.chr11 118567951 5 + 121648857 ACAGG a score=2383.0 s hg17.chr17_random 1715942 25 + 2618010 AACTCTTACAGTGCCCAGCTACTCT s panTro1.chr19 78866262 25 + 82489036 AACTCTTACAGTGCCCAGCTACTCT a score=10149.0 s hg17.chr17_random 1715967 112 + 2618010 GCAATCCAGATCCACCAGGATCCCA-AATATTCATCCCAAGACACCCACGGNGGGCAAGTTTCCACGCACGCATCTCCTAANGTGGGGGAAGAGGGTCAGGCTACCCCTGCGA s panTro1.chr19 78866287 110 + 82489036 GCAATCCAGATCCACCAGGATCCCA-AATATTCATCCCAAGACACCCACGG-GGGCAAGTTTCCATGCACGCATCTCCTAA-GTGGGGGAAGAGGGTCAGGCTACCCCTGCGA s canFam1.chr18 28775705 86 + 66173745 GCAATCCAGTTCCCTCTGGGTCCCAGGATATCACTCACACATTGTCCTCTG-TGGGGAGCCCCCCCAC---CAGAGCCCAA-----------------------TCCCTGCAC a score=213411.0 s hg17.chr17_random 1716079 1329 + 2618010 ACATACTAATATGCTGGCCAGCACGCATGTGTAGGTGCACAGGAGACCCN-------GTGC---AACTCCACCCCCGCACGACACGACCCCACTGCCCACGCTCGGAGATTCTCAGGGTCCCTTGAAGGGTCCAGCTGGCCTTGGTGGAGGCGAATGGGAGCCGCTGTCCTGGG-GTCAGCCCTTCTCTGTGCAGGCCACAGCAGCAGGTGTTCTGTGCCAAAGGTCATCCTCGCGTGTGCCGATGGGGNTGTACATGTGCTCA---CACANGGCACAAAAGCACGCACGCTGCTATTCGTGCCGTGACC--------GTGAAGCCACCGCAGCAGGCCACGTCCTGCGGCTCCCAAGGGCAGGCTGCCTTGACCACCCACTG-AGCACCTCCGA-CAGAACCATGGCGGAGCCGCAGCC----CCCC--------------AACAA----GAGTTTG-----------TTGCAGGTTGGTGCCGGGAGAGCTGAGGAGTGCTTG--------------------GGCCACAGCTGC--AGAGGCAAAGGGCTGGGCTACCTGGCTGGGGAAAAANGGAATA--TTTTCTTAAAGGGAGAAAAATCCTAAATGGCCC-TCGCAGTCTCTTGGCACACATAATTGTAGTATCCAAGTTAANTGAAAGGCCTGGCAC----ATGGGCTGAGTCACAGCAAATGCCTGGCCCNTGCACCTCACATGCAGCAGCTC----------GTAGAAATCAGACGATGGCGGGCAGGGGGCAGGGGGGG----------------------CCCAGGAAATAAAGAGCATTTCCAGGNAATGGCAAGTCTCCCACGCGGGATCATATCATCAATTAGCCAGTGGGAGGGCCGAGGAGNTGCTGGCATCTCATTTCCACAAAGACAAAGTTTCCTTGAGGAAATTGCCAGAGTCTTCAAGGTACTGANAATAACACACAGAACAAATGAAGAAGGACGGCCGCAGGGCTTGGTGGATGCTCAGAAGCCCAGCTCCCGGCAGCCTTGCAGAGGGGCGTGTGTGTTTAAAGACACA-AGTGGAG-CCTGCGATGTCCAAGANGGCAAGCACCAGTACCAATACNAT-Gacacacacantgtgctcacancatgtacgacacacatatgctcatgcacgcacacaggtacatgtgggtacaca----aantgcagaaacacancttgtgcatgtgcacatacatgcacacacatgcacacatacaggatgcacatgcatgcctgtgtgcacactctacacacaggcacatgcatgtacaatctacacgtgtg--catgtgtgcactgatatgcacgcacctgtgcacacatacatgTGCACAA----------------GCTCTGCTTGCAGGTGGGGGTCCACTATCCTGACTTCCAAACATTCAGGTTTGAGGCTCTTGCAAATGCCAGATACCATGGAGACA s panTro1.chr19 78866397 1336 + 82489036 ACATACTAATATGCTGGCCAGCACGCGTGTGTAGGTGCACAGGAGACCCA--------TGC---AACTCCACCCCCGCATGACACGACCCGACTGCCCACACTCGGAGATCCTCAGGGTCCCTTGAAGAGTCCAGCTGGCCTTGGTGGAGGCGAATGGGAGCCGCTGTCCTGGG-GTCAGCCCTTCTCTGTGCAGGCCACAGCAGCAGGTGTTCTGTGCCAAAGGTCATCCTCGCGTGTGCCGATGGGG-TGTGCATGTGCTCA---CACA-GGCACAAAAGCACGCATGCTGCTATTCGTGCTGTGACC--------GTGAAGCCGCCGCAGCAGGCCACGTCCTGCGGCTCCCAAGGTCAGGCTGCCTTGACCACCCGCTG-AGCACCTCCGA-CAGAACCATGGAGGAGCCGCAGCC----CCCC--------------AACAA----GAGTTTG-----------TTGCAGGTTGGTGCCGGGAGAGCTGAGGAGTGCTTG--------------------GGCCACAGCTGC--AGAGGCAAAGGGCTGGGCTACCTGGCTGGGGAAAAA-GGAATA--TTTTCTTAAAGGGAGAAAAATCCTAAATGGCCC-TCGCAGTCTCTTGGCACTCATAATTGTAGTATCCAAGTTAA-TGAAAGGCCTGGCAC----ATGGGCTGAGTCACAGCAAATGCCTGGCCC-TGCACCTCACGTGCAGCAGCTC----------GTAGAAATCAGACGATGGCAGGCAGGGGGCCGGGGGGG----------------------CCCAGGAAATAAAGAGCGTTTCCAGG-AATGGCAAGTCTCCCACGCGGGATCATATCATCAATTAGCCAGTGGGAGGGCCGAGGAG-TGCTGGCATCTCGTTTCCACAAAGACAAAGTTTCCTTGAGGAAATTGCCAGAGTCTTCAAGGTACTGA-AATAACACACAGAACAAATGAAGAAGGACGGCCGCAGGGCTTGGCGGATGCTCAGAAGCCCAGCTCCCGGCAGCCTTGCAGAGGGGCGTGTGTGTTTAAAGACACA-AGTGGAG-CCTGCGATGTCCAAGA-GGCAAGCCCCAGTACCCATAC-AT-Gacacacaca-tgtgctcaca-catgtacgacacacatatgctcatgcacacacacaggtacatgtgggtacacacaccaa-tgcagaaacaca-cttgtgcacgttcacatacatgcacacacatgcacacatacaggatgcacatgcatgcctgcgtgcacactctacccacaggcacatgcatgtacaatctacacatgtgcacatgtgtgcactgatatgcacgcacctgtgcacacatacatgtgcacaagcacatgtgtgcaCACGCTCTGCTTGCAGGTGGGGGTCCACTATCCTGACTTCCAAACATTCAGGTTTGAGGCTCTTGCAGATGCCAGGTACCATGGAGACA s mm5.chr11 118568204 1118 + 121648857 GCATACTTATATA------------------------------------------------------------------------------------CATATTAAAAGATTCAAGAGGTCACTGGAAGTGTTCAAGTGGGCTCAGTGACATC-AGTGTGAGCCACTGTCCCAGG-ACCA--CCCTCTTTGAGCAGGGGACAACAGTAAG------------AAGGACACCCTCCCTCCCGCCTGTGGCTGGCTACACCTCCCAAGGCCACA-TACCCGTAAGTGTGCACACTGCCATCTGTCACAAGA------------GAAACTGTCAGAGCAGGCAGCACTGCACA----CTGAAGTACGACCTCCT----CAGTGGCTGTGGTGTCCGTGG-CTGGACAATGGC--AGGCCCAGCC----CACCCCGTCTGCGCCCTGCACAATGCTGAGTTTA-----------TTGCACACCAACCTTAGGAGA---CAGAACAGCCTG--------------------TGTCATGGCTGCTTCGATGGCCAAGGCTGG-------GGCTGTGAAAAGC-GGAAGGATTTTTTTTCAGGGAAGAAAAATCCTACATGGCCC-TTTCAGCCTTTCGGCGCACATAATTGTAGTATCCAAGTTAA-TGAAAGGCCTGGCCTGCTGGCTGGCTGAATAAGCACTAATGCCACGGCC-CGGGCCTCACGGGGAGCAGTTCCATCTCCG-AGTGGAAATCAGACCACAGTGGGGTGGTGGCGGGAGGGGCGGTGGAAGAGGAGGGA---AACACACGGAATAAAGAGCTCTTCCAGG-AACGACAAGTCTCCCACGCGGGATCATATTGGTAATTAGCCAGTGGGAGGCCCGCAGAG-TGCTGGCATCTCCTCACCACAAAGACAAAGTTTCCTTGAGGAACCTGCCAGCATCTTCAAGGTACTGA-AATAACACACAGAACAAATGGAGAAGAATGACTATAGGGTTTGGTGGCTGCTTAGAAGGCTGGCGGCTGGCGGGCTCACGGAAGGCC------------AGACACGCAGAGAGG-TCAAAGGGGCCCAAGA-GATGGACTGC----CACATAT-ATGGACACACACGATATG--------ATGTATG---------------TGCACACATGCGGGTGCAGGAACGCACAAG----AG--------------ATCGTAAACATGCACATGTGCG-----GTGCCCCCACAAGCAGGATGCA----------TGTCCTCACA-TCTGCACACACACACACACA---------------------TATGTGTGCCTT------TACACACCTAGCCACACACATAT------------------------ACCCTG-----------------------------------------GAGTTGTGG-TTTCGTATTGGCCAGGTGC---AGAGA-- s canFam1.chr18 28775791 1194 + 66173745 --ACAATCACCCC----CCAACACACACACGGGTGTGCACAGAGGGCCAGCAGGCCTGTGCATAAACTCCAGTCCCCCAAAACCATATCC--CTCCCTACACTCAGAAA--CACCAGGTGCCCTCAAAGGGCCCGGTGGCCTCAGTG-----------GGACCACTGGCCTGGGCACCAGTCTTTCCCCATGAAGCCAACA-----AGATTTTCGATGCCAAGAAACACCCTCACGTG----GACGGGG-----CATGTGCACA---TGCA-TGCATCCACGCATGCACACCTCCACTGGTTCAGTGGCCCGCTCGTGGCCATGCCGGCACGCTAAGTCAGGGTGGGAGGCCACCAAG--CACGCTGCCTTGATTGTGTGCAG-AGCACCTCGGAGCCGAACAATGGTGGAGCCCCGCCCACGGCGCC--------------GGCTG----GAGTTTGCGTGTTGTTTATCACACACGGAAGACGGGCGCACTGGAGAGCTCTTGACGGCCACCGCGAGGCTCCATGTCACAGCTGT--GGTGCCAATGGGCTGGGC-ACACGGCTGCGAAAAAA-GGAATTA-TTTTTTTTAAGGCAGAAAAATCCTAAATGGCCCTTTTCAGCATTTCTGTGCACATAATTGTAGTATCCAAGTTAA-TGAAAGGCCTGGCATGCTGGCGGACTGAATACCCGCTAATGCCGCAGCC-CGTGCCTCACGTGGAGCGGCTCCAGCACCGTCGTGGAAATCAGACCCCAGTGGGGAGGTGGGAGAGGGCG-----GGCAGGGAGGTGGGAAAAGCGTGCAATAAAGAGCGTTTCTAGG-AATGACAGGACTCCCACGCGGGATCATATCATCAATTAGCCAGTGGGAGGGCCGAGCAGCCCTTGGCATCTCATTTCCACAAAGACAAAGTTTCCTTGAGGAAACTGCCAGGGTCTTCAAGGCGCTGA-AATAAGACACAGAACAAATGAAGAAGGCCGGA-GCAGGGCCTGGCCAGTACTCAGGCGCCCAGC-CCTGGCA-CCCAGCAGGGGCCCGCGTGGGCTGA-AGACATG-TGTGGAACCCCCCAGTGCCTGAGA-GGTGAG--------CACGTAC----AACACA---------------------------------------CGCACGGGCAGGTATGC---------CACA----TG--------------CTC---------CGCACACATG-------------------------------------TGTGTGCACA-----CATGCATCCACAGACA---------------------CACATGTG------------------TGTGCACATAT----------------------------CCTCTGCTGTCAGGTCGGGGTCCTCTAGTCTGACCCCCATACATTCTAGTCTGTGGCTTTCCCAG-TGCCAGGTGCTAAGGAGAC- a score=107692.0 s hg17.chr17_random 1717408 353 + 2618010 AAACGCCCTCTAAACACATTATCC-AGAAT--TTTCCCTTAATT----CCCTACAGCACATGCCCCATTTGTGAGGAGACCCCCGGGGTCTTNCAGGCTCTGACTCTGA--------TGGAGCTCAGAGTATGTCAAACCC--TTGAACAGTCCATTCAGGAACCTTCAAAGCCACACCCCAGGGGGCTCCCACCTCGAAGGCC---CGGGG-----------------------AAGCAGTCTAGNCTCAGCCGTCTAAGTG---GAGGTGACTGATTTATTCTGACCA-TCCTGACTCTTCACGACACTGCTCTCCTCCAACCATGCA-CGGCTTTAATTGTCCATCAAGCAGGGCAGGGAGGAACCGTAAATCTTTCCTCC--C-GCTGCTCCGAGCTGAG s panTro1.chr19 78867733 351 + 82489036 AAACGCCCTCTAAACACATTATCC-AGAAT--TTTCCCTTAATT----CCCTACAGCACATGCCCCATTTGTGAGGAGACCCCCGGGGTCTT-CAGGCTCTGACTCTGA--------TGGAGCTCAGAGTATGTCAAACCC--TTGAACAGTCCATTCAGGAACCTTCAAATCCACACCCCAGGGGGCTCCCACCTCGAAGGCC---CAGGG-----------------------AAGCAGTCTAG-CTCAGCCGTCTAAGTG---GAGGTGACTGATTTATTCTGACCA-TCCTGACTCTTCACGACACTGCTCTCCTCCAACCGTGCA-CGGCTTTAATTGTCCATCAAGCAGGGCAGGGAGGAACCGTAAATCTTTCCTCC--C-GCTGCTCCGAGCTGAG s mm5.chr11 118569322 312 + 121648857 --------------------ATCCTGGAAA--TCTCCCTGAGTC----CGC--CAGCGTGAACCATATTAGTAAGAAGA--CACGGGATCTC-CAGGCCCCGACTCTGG--------TAGAGTTCAGAGCATGACAGCTTC--CCTCACAGTCTCTTCTGGAATCTTCCACCCCATGCCAATGGAGGATCCTG-CTTAAAGGCC---CTGGG-----------------------ATGCAGTCTAG-CAGGGCTGTCTAAGTG---GAGGTGACGGATTTATTCCAACCG-TCCTGCCTCTTAACAACCTCTCTCTCCTCCAAGCCTGCA-CAGCTTTAATTGTCCATCAGGCAGGTCAGAGCAGAGCTGTAAATCTTTCCTCC--C----------------G s canFam1.chr18 28776985 358 + 66173745 AAACGCCCTGCAAATGTGTTCTCT-AGATT--TTGCCCCAAAGTAAGGCCTGACAGCACATCCCCCA------AGTAGACCCCTCGGGTCTT-CAGGCCCCAATTCCCCCAACCCCTCGGTGCTCACAGTATGTCAGATCC--TCCAACAGTCCATTCTGGAGCCTTCAAACCTACAACCAAGGGGGCTCCCACCTCAAAGGCC---CCGGG-----------------------AAGCAGTCCAG-CTCAGCCATCTAAGTA---GAGGTGACTGATTTATTCTGACCG-TCCTGACTCTTAACGACACTGCTCTCCTCCAGCCGTGCA-TGGCTTTAATTGTCCATCCAGCAGGGCAGGGAGGAACCGTAAATCTTTCCTCG--CGGCTTCTCTGAGCTCAG s galGal2.chrUn 26669398 374 - 165033910 AAACGCGCTCTTTTTCCATCAGCC-AAAACAACAGCAGCGAAAT-----------GCACTGCTGCCATCCGTCAGAGCAACGGCGGTGCTGG-CAGACGTGGGACCCAG--------CAGCACCCAGTGCTCCCCAAACCCAGCTCAGCCCCCAGACAAGGGG----CACAGGGACACCCCA---GACACACAGCCCCATGGCCAGGCAGGGTACGGGTGCCCTGCAGATGAAGCCAGCAGTCCCCCCTACACCCCCCCAACGCATAAAGTGATGGATTTATTGTGACTGCTGCTGCCTCTCGCAGGCACAGCACTCTCCCGGCCATGCAGCACTTTTAATTGTCCATC-AGCAGAGCAGGAAAGGACCATAAATCCCACCGCCATC-CCTGCCGTGGGCTGGG a score=184474.0 s hg17.chr17_random 1717761 1200 + 2618010 C-CTGCTTGACCTGCAATTGCCAGCCCCTCGCCTGCGTGCAGCCTGGAGAAGTCCGCTGGCTCTGAAGGTGAAGGAGGGGAGTGAGGAAGGGGAACGCAGGAGAGGCAGAA---------GGGGGTCAGGAGGGG-----AACAGAGAGAGCCAGGCAGCAGGAGA----AAGCAAGCAGCCGAC--ATGGCCATGCTCCCGCTGCTCCCGCCCCGGGGCCCCNTGCGGAGGAATGAATGCCTCAGCCCGACTGCAGCCTCGAGGGGNCCCCGGCTGGGGCGTCTACACACCTCGCCNTCCCAGGCTCCTGCTCTCAAGCAGCGGG------ACCCT--GA------TAAAGTGAGCCAGACCCTCAGGGAGTCTTGGCANTTNCCCTTGCCAGGCTATAAAACATCACAGCCCCAAAAGGAGCCCGCTG--CGGGGGATACTGATTCTCCATCCCACATTCACGGTGTCTGCAACTGGACCCCAGCTAGGGGCACAGGATCCTCTCTTAGGGTGGGTGTCTCTGTGAG-GGCAGGGACAGGCCAGGGGCCACATAGCCCCAGCTGTGGCCGGGAGAACAGAGCTGGTCCAGGNAGGTTTAGCCA---CAAGCTCCAAAGCACGCCCCCTTCCCC-TGCAGCAGACTTAATATTTTCTGTAATTTTAGTATATATTAATGCACTTCAAAGTGGTGAACATTATAGTTATGATTATTACCTAAAGACTTCCTTTATAGCCCTCATTTTCCAGTGCTCATT-ACTTTCTGAAAAATTATCCTTGGGGGCTGAAATTTTCCTAGTCTGGTCTTGTGAGTTTTCTTCTTAGGTTTTAAGCAAAACATATC--------------CGGAAGGGGGAGAAATTACTTCTCCCAAAGTCAGTCTCCTTGGTGACTTCTGCCAAGGAAAGAACCCCATGG----------------------------NGAAGGGGGCGG---------GCTGTGTCTTTAGCATGTAGATACTGATACTGTTATCAGTGATCTGGCCTTAGTTGTGCCCNGTCTGTTCTGGAGAGACGGCTCTATTTTAAAAGTCCAAGAN---------GGC-----GGGGAGGTACCCATGCGACACTCATCNTTGCATGCTGCAGCCTGGGCAAGTCAGGAAAGTGAATGCTGGNTTATGGCAATGCTGCCGACNGCACACACACAA--GCAGAC--GTATTTTCCANACANCAAAGTGCAGATCTGCAGAAAGTCTCCTGTCTGTGGCCTGGGGATGCCGATAGAGTTAAAAGCATGCA------------------GATTCTAG------GTGTATCC s panTro1.chr19 78868084 1186 + 82489036 C-CTGCTTGACCTGCAATTGCCAGCCCCTCGCCTGCGTGCAGCCTGGAGAAGTCCGCTGGCTCTGAAGGTGAAGGAGGGGAGTGAGGAAGGGGAACGCAGGAGAGGCAGAA---------GGGGTTCAGGAGGGG-----AACAGAGAGAGCCAGGCAGCAGGAGA----AAGCATGCAGCCGAC--ATGGCCATGCTCCCGCTGCTCCCGCCCCGGGGCCCC-TGCGGAGGAATGAATGCCTCAGCCCGACTGCAGCCTCGAGGGG-CCCCGGCTGGGGCGTCTACACACCTCGCC-TCCCAGGCTCCTGCTCTCAAGCAGCGGG------ACCCT--GA------TAAAGTGAGCCAGACCCTCAGGGAGTCTTGGCA--TTCCCTTGCCAGGCTATAAAACATCACAGCCCCAAAAGGAGCCCGCTG--CGGGGGATACTGCTTCTCCATCCCGCATTCACGGTGTCTGCAACTGGACCCCAGCTAGGGGCACAGGATCCTCTCTTAGGGTGGGTGTCTCTGTGAG-GGCAGGGACAGGCCAGGGGCCACATAGCCCCAGCTGTGGCCGGGAGAATAGAGCTGGTCCAGG-AGGTTTAGCCA---CAAGCTCCAAAGCACGCCCCCTTCCCC-TGCAGCAGACTTAATATTTTCTGTAATTTTAGTATATATTAATGCACTTCAAAGTGGTGAACATTATAGTTATGATTATTACCTAAAGACTTCCTTTATAGCCCTCATTTTCCAGTGCTCATT-ACTTTCTGAAAAATTATCCTTGGGGGCTGAAATTTTCCTAGTCTGGTCTTGTGAGTTTTCTTCTTAGGTTTTAAGCAAAACATATC--------------CGGAAGGGGGAGAAATTACTTCTCCCAAAGTCAGTCTCCTTGGTGACTTCTGCCAAGGAAAGAACCCCATGG-----------------------------GAAGGGGGCGG---------GCTGTGTCTTTAGCATGTAGATACTGATACTGTTATCAGTGATCTGGCCTTAGTTGTGCCC-GTCTGTTCTGGAGAGACGGCTCTATTTTAAAAGTCCAAGA----------GGC-----GGGGAGGTACCCATGCGACACTCATC-TTGCATGCTGCAGCCTGGGCAAGTCAGGAAAGTGAATGCTGG-TTATGGCAATGCTGCCGAC-GCACACACACAA--GCAGAC--GTATTTTCCA-ACA-CAAAGTGCAGATCTGCAGAAAGTCTCCTGTCCGTGGCCCGGGGATGCCGATAGAGTTAAAAGCATGCA------------------GATTCTAG------GTGTATCC s mm5.chr11 118569634 1052 + 121648857 G-CTGCTTGACCTCCAACGGCC-GCCCCTCACCAGATCTCA-CCTGGAAA-----GCTGGCTTCGAAGCACAGAGAAGGAAATG-GAGAGGAGGCTTCAGAGGTCACAGAC---------CGGG----GCAGGGGTCACAGATGGGGGGAGCACAGCAGGGGGGGGTCACAGGCAGGAAGGGGACTTAAGGCTGAGCT-CTGCTGCTGTAACTTAAG--------------------ATGCTGCAGAGCAACT---------------CTGCAGCTGGAGTCTGTCGGGACCTCTGC-TTCCAGGGCACTGGCTGGATACGGCTGGTGCAGTGCCCTTCGAACAGTCCAAAGAACACTGGGCCTTGGGGCACCCCAAG----TTCCCTTGGCTAGCTGCAAAGCTGAACAGTCTAGAA---------------GGGAAATGCTG---------------------------GCAA-------------AGGAGCTTTCCCTGCGCTCCTGGTGTG---------GTGGG-GCCTGACACGATCCAAGGACC------TTTCGGGTGT-GTCTAGAGAGCCGAGC---ACCTGG-AAGCTCAGCCAACGCAGAGTCTGACGCTCG-CCTCTCTCCC-TCCAACAGCCCAGATATCTTCTGTAATTCCAATATACGTTAATGTGTCTCAACGTGCTGAGCTGTG-------GATGACTACCCAGA---CTCACTTCTCGACTTCATTTTCTAGCACTGATTCAGTTTACGGAAAACCATCCTTGGGGCTTGCGG-TTTCCAAGGTAGATCTTGTGTGTCTCCTTCATGGGATTTGAGGGAAACATACCA-------------AGGAATGGGGAGAGATTTGTTTCCTGGAAGACGGGCAGGCTGATG---------GAGAATGGAAATCAGCCT-----------------------------GAAGGAGGGGC---------AC-----CTTCAACGTACAAAACC---------------CGATCTCACC---GCTTAGCCCTGTCTGCTCTGAGGAGAT--CTCAATTTC-AAAGTGGAAGTT---------GGTCTTTAGGGCTGGTGCCCCTGTGACATCCCTA-----CTGCTGAAGTACGGATGGGGCAGGAAAGCTAAGGCCAG---------------CCATC-ACAGAGATGAAA--CTAGACCTGCATTTTCTA-ATT-TAAG----------GCAACTAGTCTGAAGTCCCTGCCAAGGTGTGGT--ACACAGTCAAAAGGATGTAGGGTCCCTGTTTGTTCTTGATTTTAAAAAAATGTGTATCT s canFam1.chr18 28777343 1168 + 66173745 CGCTGCTTGACCTGCCATTGCCAGCCCCTCCCCTGCATCCC-GCTGGAGAAGTCTGCAGGCTTTgaaggagaagaagggaggaagggggaaggggagcaggagaaagagaaccaggctatggggtcagggagggg-----gagagaggga--tgggcaggaggaCA-------CATGTGGCC-AC--------GTGCTCTGGCTGCTAATGGGGGCGGGGCAC-TGCAGAGGACTCACCG-----------CTGCAGCCTCGAGATG-CAACGTGCATGGGGTGCAGGGACCGCGCC-CTCC-GGCCCTAGCTCTCAAGCAGCCCG------ACTCC--AG------TAAAG----CAGGGCCTGCA---------------TCCCTTCGCCTTGCTGGAAAACAGCACAGCCCTGAAAGGAACCCACTGGAGAGGAAATAATATTTCTCTATCCCATCTGCATTGTGTATGCAACCGAGCCCCATCTGGGGGCACAGGGACCTGCCC----------------ATAAGAGACAGGGGCGGGCCACAGGTG-CAGAGCCCCAGACGTGGT------------GCTGGTACAAA-AGGCCCAGCCG---CAGGCCCCAAAGCACACCTCCTCCCCCTTCCAGCAGGCTTAAT-TTTTCTGTAATGTTGGTGTATATTAATGCATTTCGAGGTAGTGCACATCACAGTTATGATTATTACCTAAAGACTTCCTTTACAGCCCTCA-TTTCTAGCGCTCATT-ACTTTCTGAAAAATTATCCTCGGGGGCCGAAATTTTCCAAGTCTGGTCTTGTGAGTTTTCTTCTTAGGATCCAAGCAAAACATGTTATTGTGTCCATGATGGGAAGGGGGAGGGGGCTCTTCCTT---AGTTGGTCTCCGTGGTGACACAGAGCCAAGAAAGAATAACATGATAACAGGGCGGGGGGGGGGTGGAGAGGATGAAGGGGGCAGAGACCACACGCTACAGTTCCAACACATAAATACAGACACTGTTATCAATGACCTGGTTTCAGTTTTACCC-ATCTGTTCTGTGCAGACACTTCTACTTTTAAAATGAGATTTCAACCTAGGTGC-----AGGGAAGCACCCATG-------CATT-----------TAGCACAGACAAGTCAGGAAAGCAAACACTCA-TCATTGCAACATTGTCAAT-GCACATTCAGAGTTGCACAC--ATATCATCCA-ACT-CAAGG-GCAAACTTGCAGAAAGATCCCAGTC-ATAGCCAGGAGACACTGA-AGAGTCAAAAGAATAAG------------------GATTCTAT------GTGCATTC a score=-31.0 s hg17.chr17_random 1718961 1 + 2618010 T s canFam1.chr18 28778511 1 + 66173745 C a score=91.0 s hg17.chr17_random 1718961 1 + 2618010 T s panTro1.chr19 78869270 1 + 82489036 T a score=182666.0 s hg17.chr17_random 1718962 930 + 2618010 TCTCAGCTGTCCTA-GATGAGATCTGCCGGTGAGAAAGAAAAATGTACCCGCTGGAAGACGGCCTTTAATCATCCTATAAAGTTGTCCCAGACAACGTCACAAG-GCTTTAATGGTAAGGAAAAGGGTAAC---AGGCTCCCCCATCAAACACAG--------GCCATCGTCCACCTGCTCTCCCTCCCGCCCTTTGGCCATCAGCTGAAGGTTCCCAGCTGTCAAGATATCAAACAGACTTCTGG-ACGATAAAGCTCGACACAGCGTTGGCTGTCTGGGAGTGTTGATTATAATGTTACGCCACTGACAACAGTAATTCTCACCTTAAATTT--------CTTCTCTTTTCTGCTAAGATTCCAAAATACTTGAATAATGTACCCTTGGATAGCACCCCTGCGAGGAACACAACCAACCACTGTCGGTCTTCTCCCCAGCAGCTGGGGGCACGCAGCCAGGATGGCCGGTGAACCACACGCCCCGTCCCAGGTCTATAAGGAGCCTGNTGGAAGCAACCCCNTCGGGTCTCTAGTTCCACTTCACCTGTCCCNTGCCATGAGGCC--------CCCAGCTGTGCCTAATGGCA---------TGACATCAAT----GATAGTCAATACTCCAGAAAGAATAAAAGCACACACTTTNGTTTTTTTTTTCTAATGGGCTTTGCAAANGCTGTGCTTCGGTTTTTCATGGGTTGAGAACTGAGATCC-AAAAACATATATCCACACGGAAGGCAGGGGTGAGCT--GGAATCCCTCAGCCTGCGCGGTAAGCGATGTGGCAGCAAACTATAGGCTCAGAGGAGCCCGGGAANGGGC--TGGGGGAGGGAGGCCATGATNCCTGCTTCCTTTCCTCTCCCTCATGGGAAATCCAACTGGC-ATGGTCTGGAG-CCTCATCTCTGATGATCCAATGCCACTCCNCTTTGCAAAAGCAAGAGGACCTGCTGCAGTGCTCCTCTC s panTro1.chr19 78869271 922 + 82489036 TCTCAGCTGTCCTAGGATGAGATCTGCCAGTGAGAAAGAAAAATGTACCCGCTGGAAGACGGCCTTTAATCATCCTATAAAGTTGTCCCAGACAACGTCACAAG-GCTTTAATGGTAAGGAAAAGGGTAAC---AGGCTCCCCCATCAAACACAG--------GCCATCGTCTACCTGCTCTCCCTCCCGCCCTCTGGCCATCAGCTGAAGGTTCCCAGCTGTCAAGATATCAAACAGACTTCTGG-ACGATAAAGCTCGACACAGCGTTGGCTGTCTGGGAGTGTTGATTATAATGTTACGCCAGTGGCAACAGTAATTCTCACCTTAAATTT--------CTTCTCTTTTCTGCTAAGATTCCAAAATACTTGAATAATGTACCCTTGGATAGCACCCCTGCGAGGAACACAATCAACCACTGTCGGTCTTCTCCCCAGCAGCTGGGGGCACGCAGCCAGGGAGGCCAGTGAACCACACGCCCCGTCCCAGGTCTATAAGGAGCCTG-TGGAAGCAACCCC-TCGGGTCTCTAGTTCCACTTCACCTGTCCC-TGCCATGAGGCC--------CCCAGCTGTGCCTAATGGCA---------TGACATCAAT----GATAGTCAATACTCTAGAAAGAATAAAAGCACACACTTTGTTTTTTTTTTTCTAATGGGCTTTGCAAA-GCTGTGCTTCGGTTTTTCATGGGTTGAGAACTGAGATCC-AAAAAC--ATATCCACACGGAAGGCAGGGGTGAGCT--GGAATCCCTCAGCCTGCGCGGTAAGCGATGTGGCAGCAAACTATAGGCTCAGAGGAGCCCGGGAA-GGGC--TGGGGGAGGGAGGCCATGAT-CCTGCTTCCTTTCCTCTCCCTCATGGGAAATCCAACTGGC-ATGGTCTGGAG-CCTCATCTCTGATGATCCAATGCCACTCC-CTTTGCAAAAGCAAGAGGACCTGCTGCAGTGCCCCTCTC s mm5.chr11 118570984 833 + 121648857 TCCTAGGTGTCCTAGGATGAGGTGCG-GAGTGAGAAAGAGAAGTAGACACGCTGGCAGACAGCCCT--------CTTGACAGTCGTCTCAGACCCAGAAACCGGAGCTTTATAGATCAGGGAAAGAACAGT----GCCCCCACCAACAAACACATCGTCCGTCGGCACCGTCCGGCTTTCGTCCCTCTCTCCC---GGGCACCA-CTGAAGGCATGCAGCTGTCTCGGTATCAAGCGAGCT---------------------GCCTTGTGGGCTGTCAAGGAGTGTTGATTGCAATACTGTGCCGATGACAACCATAATTCTCACCTTAAGTTCCTCTGGTACTTCTCTTTCCTGCTAAGATTCCAAAGTGCTTGACTAATGTACCCTCGGATAGCACCGCCTCGAGG---------CCCCATTACAGGCCCT-----------TAGAGGGAATGCAG--GAGGAAGCCTGAGATCC-CGTG-CCCACCCGCCGTGCACCAACAGCCTG-TGTAGGCAACCCCTGTGGG--CCTGCTTCCCCCTCGCCTGTCCC-TG-CATTAGCCATCCCCCCGCCCAGCTGAGCTTAATGGTA---------TCTTCTCAGTGAGGGAGAGTCAATAACTTAGAGAG-------GCGGGCAGGCTCTCTGTTTATTTCTAATGGGTCTCTCAGA-GCTACGCCTTGCTTTTTCATGGGCTGAGTCCTGAGACCCTGAAAAC--ATCTCCATGCTGTGGG-AGGGGGGAAGT--GGATTCCCTCGGCTTGGGAGG-AAATGTCTTAGCAGCGACTCATGGGCTC--AGGAGTCCAAGAT-GA-----TGGGGATAGTGGCCATACT-CTATCTTTCTCCCATCTC-------------------GCC-ATGACCGGCAG-CACCCTTTCT--------------------CCATA-AAAAGCCAAAACACCTTCTTCCCTACC------ s canFam1.chr18 28778512 867 + 66173745 TCTTAATTGTCCTAGGA-GAGATCTG-CGGTGAGAA--AAAAATGTACTTGCTGGTAG-----------TCATGCTGGAAAGTTGTCCCAGACACCACAGAAGG-GCTTTCGTGGTGAGGGCAAGGGTAACTAGCGGGCTCCCCACCAAACAAAG--------GTCATCATCCAGC--CTCTGACTCCCTGCCCTCGGCCA------GGAGGCT-----------------------GACTTGCGGCACGCTAACACTCGATGTGACGTGGGTTGTCCACGAGCACTG-CTACAATATTACACCACTGAAAATCCTAATCTTCACCTTAGATTTCTCCAGCTCTTCCCTTTTCTGCTAAGATTCCAAAACACTTGACTAATGTACCCGTGGATGGCACCCCTATGAGGCAGGCAGC-GAGCGCTATCAAGTCCATTATGAGCAGCTCGGGGAGCGCAG-CGGCGACGTTGGTGAACCACA-GCCCCATCCCTAGTCTACAAGAAGCCTG-TGTAAGCAGCCCC--TGGAGCCCCGGTTCCACCTCACCTGTCCC-TGCAGTGGGGGC--------CCCAGCGGTGCCTAACAGCACCGCTGTGGTCCCTTCAATGAGGAAGAGTCAATATTCCAGAAAG-------ACACACACACTTCATGTTTATTGCTAATGGTTTCCCCAAA-ACTATGTTTTGGTTTGTC-----------------ACTC---------ATCTCGGTACTGAAAGCAGAGGTGGGACAGAGAATCTCTCTGGCTGAGAGT-AAATGCCATGGTGG-GATCCACAGGTCCAGAGGAGGCTGGGAA-GGGTGGTGGTGGGAGTGGGTCATGAT-GCTTCTTCCTTTCAGCACCACCATGGAAAACCCAGCTGGCAATGACCTAGGGCCCTCAACTCTGAGAATCCAAGGCCAC----TCTTACAAAAGCAAAGAGCCCAGCTGCAGTACCCCCCTA a score=-139.0 s hg17.chr17_random 1719892 4 + 2618010 TNCC s panTro1.chr19 78870193 3 + 82489036 T-CC a score=27728.0 s hg17.chr17_random 1719896 314 + 2618010 TTGAGCTACCCttttttttttttttttttttagggggagtcttgctctgttgcccagactggagtgcagcggtatgatcttggctcactgcgacctccacctcccaggnttcaagtgattctcctgcctcagcctcctgagtagctgggattataggcgtgcaccatcatacccagcgaattttttgtacttttagtatagatggggtttcaccatgttgaccaggctggtgttgagctcctgacctcaggtgattccctgcctcggcctcccaaagtgctgggattacaggcgtgagacaccctgccctggcc s panTro1.chr19 78870196 310 + 82489036 TTGAGCTAC---TCtttttttttttttttttagggggagtcttgctctgttgcccagactggagtgcagcagtatgatcttggctcactgcaacctccacctcccagg-ttcaagtgattctcctgcctcagcctcctgaatagctgggattataggtgtgcaccatcatacccagtgaattttttgtacttttagtatagatggggtttcaccatgttgaccaggctggtcttgagctcctgacctcaggtgattccctgcctcggcctcccaaagtgctgggattacaggcgtgagacaccctgccctggcc a score=2086.0 s hg17.chr17_random 1720210 19 + 2618010 TCCTTGTGGTACTCTTGAC s panTro1.chr19 78870506 19 + 82489036 TCCTTGTGGTACTCTTGAC s canFam1.chr18 28779384 19 + 66173745 GGTTTGTGAAATTGTGGCC a score=77018.0 s hg17.chr17_random 1720229 572 + 2618010 ACCCCNGCT---GGCAGTGGAGGCATGGGGAGAGCACACCGGGCCCATTGAGG---GGACACAGCA----CAGGCAGGAGCCCTGTTATCCCCTGGATGGCCTGACCCGGGTAACAACTGAGTCCACGGCCCCACAGACAGGAC----CTTACTTCTTTCTGCCTGGCTTCGGGGTGTTNCCTAAGGACATGAGCTGCTGGGGGCTGCTCCAGGGA-----GCCCTTCCAGGCCACCCAAGGGAGTGAGGGTCCCCTCAGACCCCAACCTC-TCTATAGAGACATGCTAAGGGTTGTTTCCATCCTTACATCTGCAAGTTTATCTTTTAAAGCGAGCTCTATTAAAGCAGCCTCAT--AATTATACCCACAGGGAACAGTTTGGAATCCAT-TCCTTAAC-----------CCTGACCCTTCCGAACCC-TAGCAACATGCTCGTTCCTCTACTAGGTGGATAGCCCCAGGGAAGGGTCCCACTCACCACA----TCAGCGGCTTTACATAG-----ATCGCCTGATCCACGCAGCAGTCCCTGCTTCTCAGCAGGGTAAACTGAGGTTCCAGAGCCTGCCCTGGGTGGCAAGGCTGGGAAGGGTGCACGCCCTCC s panTro1.chr19 78870525 570 + 82489036 ACCCC-GCT---GGCAGTGGAGGCATGGGGAGAGCACACCGGGCCCATTGAGG---GGACACAGCA----CAGGCAGGAGCCCTGTTATCCCCTGGATGGCCTGACCAGGGTAACAACCGAGTCCACGGCCCCACAGACAGGAC----CTTACTTCTTTCTGCCTGGCTTCGGGGTGTT-CCTAAGGACATGAGCTGCTGGGGGCTGCTCCAGGGA-----GCCCTTCCAGGCCGCCCAAGGGAGTGAGGGTCCCCTCAGACCCCAACCTC-TCTATAGAGACATGCTAAGGGTTGTTTCCATCCTTGCATCTGCAAGTTTATCTTTTAAAGCGAGCTCTATTAAAGCAGCATCAT--AATTATACCCACAGGGAACAGTTTGGAATCCAT-TCCTTAAC-----------CCTGACCCTTCCTAACCC-TAGCAACATGCTCGTTCCTCTACTAGGTGGATAGCCCCAGGGAAGGGTCCCGCTCACCACA----TCAGCGGCTTTACATAG-----ATCGCCTGATCCACGCAGCAGTCCCTGCTTCTCAGCAGGGTAAACTGAGGTTCCAGAGCCTGCCCTGGGTGGCAAGGCTGGGAAGGGTGCACGCCCTCC s mm5.chr11 118571839 524 + 121648857 ATCCCCATC---AGGAGTAGAGACCTG-------------AGGTATAACCAGA---GGACATACCAGGGTCAGGCAGGAGCC---TAACCTCTTGGGCAGCATGTCCAAAGTGAC-CCTTAATGCGCAGGTCTTCGGACGGGAC----CTCATATC-TCCTGCCCAGCCACAGGGTGCT-CCTGAG--TATGAGCTGCTAGGCTCGAACCTGGAGACACCCACACCCTTAGATCACCAGAACAAGGAAGGGTCGCCCAACATCTCCACCTCACCTATACCGTAACTCCGAGCA----TCCTATGCGAGCACCTGGAAGGTCACCCG-------GAGCTACTTTAAAACAGCCTCAT---CTTGTAAT--CAGGAAATAACTCTGAAGCCAC-TCCTTCATCCCTCATGAGGCCTGGCTCTTCTGTCTCCACAAAAGCAGGCGCCTCCTGCACAGAGGTGGGTGG----------------------TGACG----CCAG----TCTACA----------CCCATGGTCC-TGCTGCGGGCCATG--TCTCAGCTGAGC-ACCAGTGGCCTCAGAGATTACCATGTGTAATGTGGTTGATAATCTTGTGTCCCCTCC s canFam1.chr18 28779403 518 + 66173745 ACCCCCACCCCGGGGAGCAGAAGCATGAGGA-AGGACAGGTGGCCCATTGAGGCAACAACATACCATGAGGAAGCAAGAGCCCT-CCATTCTCCCAGTGCCCTGGTCAGAGTGAC-CCCTGGTCCACAGCCCCATGGACAGGACCTGGCTCACGTCCCTCTGCCTGGCC------TGGC-TCTGAAAACCTGGGCAGCTGGG--CTGCTCCTGGGG-----ATGCCTCCAGCCCACCCAAGTAAGAAAT-----------------------GCTATAGAGAGATGCTCAG------CCTCATCTTGGCACCTG-------------------GAACCATTTCAAAACCATGTCATCTCCTTGTGGCCATAGGAGACAATGCAGAGTCTGCGTCCTTAAC---------------------------TC-AGACAAGATGTTCATCCCTCTAGTAGGCAGCTGGACC--AGAAAAGGCCACGCTCACTACAGGCTGCTGTGAGCCTACTAAGTGCCAGCTCCTTGCTATGTGCTGCCTCCCCAGC-GCTCAGCTGAGTAAAACG-GGTTTGAGAGCTTGCTCCG-GCCACGGGGTTGGGAAGTCTGCATTCCCTCC a score=88418.0 s hg17.chr17_random 1720801 731 + 2618010 CCAGCGGTATGCTGCAGGCAAC--CCTGCCACCATCAGAGGTCAGCTCCGGCCTCAGGCTGTCCCTGCACAGAGCCCGCCCACCAGCCAGCAGGNTGCAGGCCGAATCCACTCACCACACCCACAGGTTGTGCGGCCGGCCCTGATGGGCTTTAAGAGCTCATGAAAGGTAACTGACATACCGCCTTGCTCAGAAGTCACTTC-CATTTCAATGTGCATGTAACTGTGTGTGCCCACGGGCAAANGGGTGATTCTTGTAAGAATCAGCTGATGGGAGTGGGGAGCTGCCAAGATGTACAACCTCAGAACCTCCC-ATGAATAAGGAAACTAACTGAGTGAAGACTCAG-CCACACCTCCAGGGTGAAGGGCAGGTGTCAACACCAAGTCATTAGGCTTTGC-AGAGCCCATCAGGAGCCTGTGCATGGACCCAGNTTTAAAGCATATTCTGGGTTTCCTTTTTTTGCTCGGATCTCAAGGTGACGGGTAATGTCGGGACATANCCGGTGTGTGCGGCTCTCCCAGGTGATACATTAAAAAGTCATCCTCACACCTCGCTGCTGAAAACAAAAAGCTACAAAGCCCTTCTTGCCATTGCTTTTTAAAAAGNTGGGGTGGGCTGGGGTGGNGGTGGGGAAGAAGANGGTCACCNAGCAGGTGCTTGATTCCAAGGTGCCCAGAAGCTCTTAGGAACAGACCCTGGAGCTTCAGCCAGCCCCCAGCCCTC-----AAAAGTTCCA s panTro1.chr19 78871095 723 + 82489036 CCAGCGGTATGCTGCAGGCAAC--CCTGCCACCATCAGAGGTCAGCTCTGGCCTCAGGCTGTCCCTGCACAGAGCCCGCCCAGCAGCCAGCAGG-TGCAGGCCGAATCCACTCACCACAGCCACAGGTTGTGCGGCCGGCCCTGATGGGCTTTAAGAGCTCATGAAAGGCAACTGACATACCTCCTTGCTCAGAAGTCACTTC-CATTTCAATGTGCATGTAACTGTGTGTGCCCACGGGCAAA-GGGTGATTCTTGTAAGAATCAGCTGATGGGAGTGGGGAGCTGCCAAGATGTACAACCTCAGAACCTCCC-ATGAATAAGGAAACTAACTGAGTGAAGACTCAG-CCACACCTCCAGGGTGAAGGGCAGGTGTCAACACCAAGTCATTAGGCTTTGC-AGAGCCCATCAGGAGCCTGTGCACGGACCCAG-TTTAAAGCATATTCTGGGTTTCCTTTTTTTGCTCGGATCTCAAGGTGACGGGTAATGTCGGGACATA-CCGGTGTGTGCGGCTCTCCCAGGTGATACATTAAAAAGTCATCCTCACACCTCGCTGCTGAAAACAAAAAGCTACAAAGCCCTTCTTGCCATTGCTTTTTAAAAAg-tggggtgggctggggtgg-ggtggggAAGAAGA-GGTCACC-AGCAGGTGCTTGATTCCAAGGTGCCCAGAAGCTCTTAGGAACAGACCCTGGAGCTTCAGCCAGCCCCCAGCCCTC-----AAAAGTTCCA s canFam1.chr18 28779921 652 + 66173745 -CGAGAACACGCTGCGGTCAGCTACCCCCCACCA---------------AGCCCCAGTGTG---------------------------GGCAGG-CGCTTGCCTCCTCCATGCACTGGGCTGATCAGCAGAGCCGCT-GCTCCAGTGGGC-TCAAGGTCTCCAGAAAGGTAAGAAAGCTACAGCTTTGTTCAAAAGTTGCATAGCATTTCAACATGCATCTAAATGTGCGT-CCTGGAGGTGAA-GGGTGCTTCTTCTAC-AATCAGCCCATGGGA----GGAACGCCCGGGATGGGCCATCTCAGGGAATCCCTGTTAACAAGGGGACTGACTAACCAAGGGTTCAGACTAGACCTCCAGGG-ACAGGCCAGGCTGTGAGGATGAATCAGCACGTGCTGCTGGAGTCTGGCAGGAGCCACAACACAACCC--------------ATTCTGATTTTCCTTCCTCTCCTCGGGTC-CAAGGTAATGGGACA---CAGGAAAAC-CTGGTGTGTGTGGCCATCTCGCGCAAACTACTGGGAAATCATCTTCACACCTC-CTGCTGAAAAC-AAGAGCTACATGGCCCTTCTTGCCACTGCCAACAGCAAAG-AAAAA------AATATGG-GGTTGGGAAGAAGA-G---ACC-AGCAGGAGC-TGTGCTGAAGGTGCCCGGCTGCTCCTACATA-AGACCCGGGAGCGGCGTCTTATACCCGAGTCTCAGAAGAAAAGTTCCA a score=22246.0 s hg17.chr17_random 1721532 97 + 2618010 -GANAAAATAGGAGTTGTTTTT-----GATGTAATCCAGGAGAGAAACCTCTAATTTG----CATTAAGAGTTTGGAGCTATGAAAGTTTAGTGAGAAATGATTTCT s panTro1.chr19 78871818 96 + 82489036 -GA-AAAATAGGAGTCGTTTTT-----GATGTAATCCAGGAGAGAAACCTCTAATTTG----CATTAAGAGTTTGGAGCTATGAAAGTTTAGTGAGAAATGATTTCT s mm5.chr11 118573397 105 + 121648857 -AA-AAGGTAGAATTTCTTCCTCCCCCTCTTTAATATAGTGAGCAAACCGCCTATCTGAACTCAGTAAGGATTTTAAATTATTAAAGTTTAGTGAGAAAATATTTGT s canFam1.chr18 28780573 99 + 66173745 GAA-GATCTAGGAGTTATTTCC-----TGTTTAATCCAGTAGAGAAACTTCTCATTTATACTCAGTAGGGATTTTAAACTACT--AGTTCAGCGAGAGATTATTTCC a score=4357.0 s hg17.chr17_random 1721629 47 + 2618010 AAAGGTACCAGGGTGTTTGTACTTGCTTTAAATCTTTCTCCAAATTG---- s panTro1.chr19 78871914 47 + 82489036 AAAGGTACCAGGGTGTTTGTACTTGCTTTAAATCTTTCTCCAAATTG---- s mm5.chr11 118573706 39 + 121648857 -----TAAGAAAGCATTTCTAAGTGC---AAATCTTGTCTCAAAATG---- s canFam1.chr18 28780672 51 + 66173745 AAATGTACCTGGGTGTGTGCTCGTTCCTCTTTACCTCCCCAGAGATATCCA a score=100962.0 s hg17.chr17_random 1721676 653 + 2618010 TGGACCTTCCT---AATACAAGGAAACCCTATGTCCTTTGGCTCCAAANAGAGGTTCCCNANTTTTTCCAT-CAAAAATCTCATTGCTGAGGA-TAGCCTGCTCCTCCATGTTCTCATGACCGTTGCCTAAAAGCAAACGATCCGGAGACATGA-GCCTGGCCCANGGAATCGGCATTTGCTTGGTGTCCAAGGATGTGAACTGCAGGATGAGAGCAAGGGCAGGAGAAGCACCTGGACTCCAGGGACA-CCATTCCTGCCNATCTTCATCCCTGGGTCTCACCTGGTGTCATAGACAAGGAGACGTGGATGAGAAGGACTGCAGTCCATGGTGTTCGGGCTGCTCAAGGGCAGAACTCTGAATGCGCCCTTGGTTTGCGTGGCACACTGCCTCCACTACTGTATTGG-TGGCCCTGC-AGAAGAGAATCTGATCTGGAGGTCCG-GGTTACCTTT-GTTTGTTTGTTTTGATGGAGGGAGAATTTTGGAGCAAGAC-AAGATGCCTT-----------GGCACACAGGATTCTCCGCTCTGGCACAAAAGATA--CATGTTATGATCTCAACTG----------GGCCCCCAAA----CAAGGACT----TGAAACTGTTCAGGGGCTGGCTGGTGGCAGCTTTCTATGCTCAGGCAGTTTCCTTGCCTGCAAATGGGATTATTTTCTAAAAGGG s panTro1.chr19 78871961 643 + 82489036 TGGACCTTCCT---AATACAAGGAAACCCTATG-----TGGCTCCAAA-AGAGGTTCCC--ATTTTTCCAT-CAAAAATCTCATTGCTGAGGA-TAGCCTGCTCCTCCATGTTCTCATGACCGTTGCCTAAAAGCAAACGATCCGGAGACATGA-GCCTGGCCCA-GGAATCGGCATTTGCTTGGTGTCCAAGGATGTGAACTGCAGGATGAGAGCAAGGGCAGGAGAAGCACCTCGACTCCAGGGACA-CCATTCCTGCC-ATCTTCATCCCTGGGTCTCACCTGGTGTCATAGACAAGGAGACGTGGATGAGAAGGACTGCAGTCCATGGTGTTCGGGCTGCTCAAGGGCAGAACTCTGAATGTGCCCTTGGTTTGCGTGGCACACTGCCTCCACTACTGTATTGG-TGGCCCTGC-AGAAGAGAATCTGATCTGGAGGTCTG-GGTTACCTTT-GTTTGTTTGTTTTGATGGAGGGAGAATTTTGGAGCAAGAC-AAGATGCCTT-----------GGCACACAGGATTCTCCTCTCTGGCACAAAAGATA--CATGTTATGATCTCAACTG----------GGCCCCCACA----CAAGGACT----TGAAACTGTTCAGGGGCTGGCTGGTGGCAGCTCTCTATGCTCAGGCAGTTTCCTTGCCTGCAAATGGGATTATTTTCTAAAAGGG s mm5.chr11 118573973 538 + 121648857 CTGTCCTTCTTAAAAACACATGTGAAGCTCATGTCTTTGGGCTTC----AGTGG-------GTTTT---AT-AGAGAGCCTCAT--CTGAAGAGCAGCCAGCTTGTC--TGTCCTCATTTCCCTTGCCTGAGAGAAAATGCTTCTGGTTCAAG--GCCCAGTGCA-TGAAGCACTATTTTCCCAGTACTTAA-GATGTGCATT-----CTGAAAGCAGTG-----------------------GGGACAGCTACCCCTGCT-GCCTTCAT------------CCTGGTAACAGGGACAGGGGGACATCAGTGAGCAGAGCCACAGCCCTTGGTATCTGAGGTGCTCACAGTCAGAAATCTGAATGGATCTTGGGTCTGCGTG--------------CAACTGTCTCAT-ATGCCCAGC-AGTGAGAAACCTAGTTTGCTAGTGTGAGGTCAC-------------------ACATAGGGAG-ATTTTAAAGTGAGAC-CAGGTGCCTT--------------------------------TGAAAAAAAAGGCACCCAGGTCA-GTTCCCCAT--------------CCCCCACCGTATCAAGG--------GAATCCACAGAGAGATGGA--GGTAGCGCCTGTCTGGACGCAGGCAGTTTCTTTACCTGTAAACAGGACTGGTTTCTAAGAAAA s canFam1.chr18 28780723 603 + 66173745 -TGCACTTTTT---AATAGAACTAAACTTGATGTTCCTTGGCCTTCAC-AGAGGTTCCC--CTTTCTGCACACAGAGGCTTCAGTGCTGAGAA-CGGTGT-CTTCTCTGTGCTCTCATTATCCTGGCCTACAAGAAAGCTCTCCTGAGACATGATACCCAGCCCA-GGAATCACCAGTCACCT------------------------------------------------------------GGGGCA-CGG---------ATCGTCATCCCTCGGTCTCATTTGCTGTCACAGACAAGGAGACATCGGTGAGCAGGGCTGCA-------GTGTTCCAGATATTCAAAGGGAGACCTCCGAATGTGCCCTAGGCTTGTGTACTACGCTGCCCACACAACTGTAATGACCTGCCCTGTGAGAAGGGATTTTTTTGGAGGGGACTG-TGTTACTTTTAGCTTATTTGTTTCAGTAGAAGGACAATTTTGAACTGAAACTAAGATGTCTCAGAGAAATCAAGGCACACA-GATTCTCCTGTTATGTAGAGAAGATA--GAAGTTATGATCTTGTCTGCCTGCACCCCGCCCCCCACCGCCAAAAGGAACCTGATGTAACTGTGCAGAGCCTGGCTGCTAGCAGGTGCCT--GCCCCAGCAGTTCCCTCACCTGCAAGTGGGACTCTTTTCTAAAAGGG a score=13800.0 s hg17.chr17_random 1722329 96 + 2618010 CTAAAATAGACATACCCGGCCACCTTCCTCGCCAGCTGGCTTCCACTCACAGCCCAGCGTT---CAAGGCAGGGTGGGCT---CACCTCCCCAAATATGGAG s panTro1.chr19 78872604 96 + 82489036 CTAAAATAGACATACCCGGCCACCTTCCTCGCCAGCTGGCTTCCACTCACAGCCCAGTGTT---CAAGGAAGGGTGGGCT---CACCTCCCCAAATATGGAG s canFam1.chr18 28781326 102 + 66173745 CTGAAGTAGACATACCTGAGCACCTGCCTCTCCTCCTGGTTGCTAATCACTGTCCAGCGCTACGCTGGACCAGAAGAGCTAGCCACTCCCTGCAGCACTCAG a score=41984.0 s hg17.chr17_random 1722425 255 + 2618010 CAGCCAGCCAAGCAGAGACCTGCGCATAC-AGAGCT---------GATGACC-------------AGCGGTGG-------GTCCAGTAGGGAGAC--------------GGCCAGGTACA---GAGCGGTTGCT--------CCGC------CTAGGCCTCTGTTCTTCTGGAGTCTTGGGAGAAAGCTCTCAGCACAGCCGCTAACCAAAGCAATAAGCAAGTAAATTCCTGCTAAAAATACATATATTCTTCCTCTTTC--TTTTTTCTGCTNGGGAATATGTTCTGAGCACAAATAATTAAACCTTAAAAGAAAA s panTro1.chr19 78872700 254 + 82489036 CAGCCAGCCAAGCAGGGACCTGCGCATAC-AGAGCT---------GATGACC-------------AGCGGTGG-------GTCCAGTAGGGAGAC--------------GGCCAGGTACA---GAGCGGTTGCT--------CCGC------CTAGGCCTCTGTTCTTCTGGAGTCTTGGGAGAAAGCTCTCAGCACAGCCGCTAACCAAAGCAATAAGCAAGTAAATTCCTGCTAAAAATACAGATATTCTTCCTCTTTC--TTTTTTCTGCT-GGGAATATGTTCTGAGCACAAATAATTAAACCTTAAAAGAAAA s mm5.chr11 118574795 293 + 121648857 CAGCCAGACAAACA-------TCACTAAC-AGAGGTTGCAGCAGAGATGGCCTACCAACTCATGAGGTGGTGGCATTCCCATCCAGGCAGCAGACTAACTGCCAACCGAGACCAAACACACAGGAGCGTGTAGTGAGAAAAGCCGCTATCCACCGTGCTCCTGTCCCT---GAGACCCCGGTGAAAGGTCTCAGTCCGTACAAGGAGCAAAGCCGTAAGTGGGCAAAACAGTTCTAGAAATGTGCACTGGATAC-------------TTCGGCT-AGGAATGTGCCCTGACCTGAGATAATGGGATCTGGAAGAAGAA s canFam1.chr18 28781428 259 + 66173745 CAGACA-CCTGGCGGACACCTGCACACACAAGTACT---------GATGACC-------------ATGACAGG-------ATCTCAGAAGGAGCCTGGCAT--------GGCCAGGTACA-----ACAGTGGCT--------TCAC------CCATGCCCCTGTTTTTGTAGAACCTTGGGAGGAAGATCTCAGTAGAGCCACTAACCAACGCAGTAAGTGGATGAAGTTCTGCTAAAAACACATATATCCTCCCCCTCCCATTTTTTTCTGCT-AAGACTATGCTCTGGCTTTAGAC-ACTAAACCTTAAAATATAt a score=300.0 s hg17.chr17_random 1722680 1 + 2618010 C s panTro1.chr19 78872954 1 + 82489036 C s mm5.chr11 118575088 1 + 121648857 C a score=31776.0 s hg17.chr17_random 1722681 164 + 2618010 TTGCAGTAGCAAGTGCTTGGCTCTTGGTCCTAAGAGGAAACCACGGAGGCTGAGGACCCCCNAACTC--------A---AGTTGACGCCAGCAAGTTACAAC--------------CCACCTCTCAGGTGGAACCCACGAGCCCTGGCCCCAACCTACACGGAAGGAGTGGAGAC-GGATCCAAGGGAAG s panTro1.chr19 78872955 163 + 82489036 TTGCAGTAGCAAGTGCTTGGCTCTTGGTCCTAAGAGGATACCACGGAGGCTGAGGACCCCC-AACTC--------A---AGTTGACGCCAGCAAGTTACAAC--------------CCACCTCTCAGGTGGAACCCACGAGACCTGGCCCCAACCTACACGGAAGGAGTGGAGAC-GGATCCAAGGGAAG s mm5.chr11 118575089 173 + 121648857 TGGGAATAAGACTCTTTTGCTTCCTGG-CCTAACAGGAAACTGAAGACACC----CCCCCCCCACTC--------AGTGAGTTGGTG-TAACAAGGGATAGCAGAAGCCTCTCTCTCTCTCTCTCTGACAGAGGAGGTAGAAGCAGGCTGTGGACTGTAC---AGGACTGGAGACTGGATACAAGAGAAG s canFam1.chr18 28781877 173 + 66173745 TTTCAACAAGAACTGCTTTGCTCTTGATCCTCAGAGAACACCACAGACTCTAAAGACCCCACCTCCCCTAACATGA---AATTGATGCTAACAAGTTACAAC--------------CCACCTCCCAGGTGAAATCAGCAGGAACCAGCCCTGAGCTACACAGGAAGAGTGGATACTAGATCCAGAGGAAG a score=22412.0 s hg17.chr17_random 1722845 281 + 2618010 ACTGATTTTCACTTCT-------AAAAAGCTTCCCCAAGCCGCAGCTTTCTCTACCCACAAGGGGAAC-------ACTCCCCACAGAGGAGAGCACCCCATCCCTT-GTTCTTCTGCCCCCTATCCCCTGACTGCAGAGCCTTCGATACCNACAGTCT---TGTCNAANTGTTTCGAGTGCAGTGAGTTGGCAGGGGCAGCAGCAGTGAGAAGGGAGAGGAGGGGCAAG---------GAGACC----ACCNTCAAGCTGCTGGTCTGTCTAGAGACCAGGAAGAAACCNAGAAGGAC----GCCTGGGCCTGACC s panTro1.chr19 78873118 276 + 82489036 ACTGATTTTCACTTCT-------AAAAAGCTTCCCCAAGCCGCAGCTTTCTCTACCCACAAGAGGAAC-------ACTCCCCACAGAGGAGAGCACCCCATCCCTT-GTTCTTCTGCCCCCTTTCCCCTGACTGCAGAGCCTTCGATACC-ACAGTCT---TGTC--AATGTTTCGAGTGCAGTGAGTTGGCAGGGGCAGCAGCAGTGAGGAGGGAGAGGAGGGGCAAG---------GAGACC----ACC-TCTAGCTGCTGGTCTGTCTAGAGACCAGGAAGAAACC-AGAAGGAC----GCCTGGGCCTGACC s mm5.chr11 118575262 282 + 121648857 GTTTATGTCCATTTTTACTTGTAAGGAGGTTTCTGGAATCCACAGC--TCCCTTCCTTGAGGGGGGGTGGGAGGGACTGACAAGGAAACTGCCCAGCTCGTCCTTTCTTTCTTCCACCCTCTGCCTTTT--------AGCCTCTG-TGTC-ACAGCCTCCCTGCC--AA----------GCAGTCAAGAGAGATGGCCAATGGAAGCTGGAGGGTA------CGGCAAACTTTCTCCTCAGACCTAGAACC-AGCAGCAGTCAGATGGCATACAACCAAGGAAG---CCAAGAGGCACAAGAGCCTAGGCCCCTCC a score=13086.0 s hg17.chr17_random 1723126 146 + 2618010 AGAACAGTCAAGGCCCCCACGTGTCTTACAGGTAAGGGCCAGGATCAGAGGCCTGATGACACCAAGCTCCCTGCACCCAAGAGGTGGCCTTTGCTTTGGGAGAAAACATACTTGTCCACTTAGCACTTGTNAATTTCTATAGGAGT s panTro1.chr19 78873394 145 + 82489036 AGAACAGTCAAGGCCCCCACGTGTCTTACAGGTAAGGGCCAGGATCAGAGGCCTGATGACACCAAGCTCCCTGCACCCATGAGGTGGCCTTTGCTTTGGGAGAAAACATACTTGTCCACTTAGCACTTGT-AATTTCTGTAGGAGT a score=9395.0 s hg17.chr17_random 1723272 50 + 2618010 CCTATCACACAGTGGAGCACATCCCTAGGCCCCTAAATTAAAGATGGTGG s panTro1.chr19 78873539 50 + 82489036 CCTATCACACAGTGGAGCACATCCCTACGCCCCTAAATTAAAGATGGTGG s canFam1.chr18 28782055 46 + 66173745 CCTATCACACAGTGGAGCACATCTTTAAGCCTCTAATTTAAA-ATAA--- a score=6696.0 s hg17.chr17_random 1723322 54 + 2618010 --ATGGTCCTTTCCCAGGCCAAGAGG---------------------------GGGACTC----CCGTGGT------------ACCCGGGCAAGACGCA s panTro1.chr19 78873589 54 + 82489036 --ATGGTCCTTTCCCAGGCCAAGAGG---------------------------GGGACTC----CCGTGGT------------ACCTGGGCAAGACGCA s mm5.chr11 118576195 85 + 121648857 --ATAGTCCTTTCCTAAGCCATGAGGCTTCCTCTTGCTGGCCATCCTGCACAAAGGACCCTTTGCCGTGGC------------TCCTGAGTTGGGGGCA s canFam1.chr18 28782101 68 + 66173745 AATTGAGTCTTTCCTAGGCCTGGCTG---------------------------GCCATCCC---TCGTGGTGGCCTGTCTTGCTCCTGAAGAGGA-GCA a score=6825.0 s hg17.chr17_random 1723376 61 + 2618010 TCCAGAATGACTCCTTCCACCTAGACCCTGGCCACANCTTTTCAAAATGCAACTGATAGA--C s panTro1.chr19 78873643 62 + 82489036 TCCAGAACGACTCCTTCCACCTAGACCCTGGCCACA-CTTTTCAAAATGCAACTGATAGAATG s canFam1.chr18 28782169 54 + 66173745 TTCGGATCTGC----TCCACCTAAA--CTGGCAACA-CTTTCCAAAAGGCCATTTGTATA--C a score=104218.0 s hg17.chr17_random 1723437 547 + 2618010 ---------TGAGCT-------CGCCCCGAGCTA----------------CAAATAAACTAACAGA-CTTTATACTCTTTATTAT-TCCAGCCTCCCTCTAAGGCGTGTTTTGGTGTCAGTCTATGTGTTGGAGAAACNTGTGATAGCAAACTAATTTACTAAGTGCATTGCACTTAAAAATGT--CTATTTTATACACCAAATCAGTCTGTGTCACGTGGTATTTCTTGAAGGGAGGTGACTCGTCTGTCTGTGGGTCCCCAACCCAGAACAGGCCCCGCCGGGTATGCACAGCATATGTATGTGTGCAATGCTCCTTGCATGCCCGCCATGCAACTGTTAACCAAGAGCCGTCCTCAACCCTCACAGGTCACACAAGGAGGCAATCACACACTAAGCATCCGCGCCACTCAGAAAGCACAGGAGGAAAAA-AGAGTTGGGGAGAGGAAGAGATAG--ACGGACAGGGNAGACAGGGAGATAGACCC----------------AGGACGTTAT--------AGAGGACAGGGATGGCTCAGGGAGCAACCTTCTTCNAGAGAGGCAGCAGAAAGTAAGATGTTGAGGCTG-CCTGAANTGTTTCATGAGC s panTro1.chr19 78873705 543 + 82489036 ---------TGAGCT-------CGCCCCGAGCTA----------------CAAATAAACTAACAGA-CTTTATACTCTTTATTAT-TCCAGCCTCCCTCTAAGGCGTGTTTTGGTGTCAGTCTATGTGTTGGAGAAAC-TGTGATAGCAAACTAATTTACTAAGTGCATTGCACTTAAAAATGT--CTATTTTATACACCAAATCAGTCTGTGTCACGTGGTATTTCTTGAAGGGAGGTGACTCGTCTGTCTGTGGGTCCCCAACCCAGAACAGGCCCAGCCGGGTATGCACAGCATATGTATGTGTGCAATGCTCCTTGCATGCCCGCCATGCAACTGTTAACCAAGAGCCGTCCTCAACCCTCACGGGTCACATAAGGAGGCAATCACACACTAAGCATCCGCGCCACTCAGAAAGCACAGGAGGAAAAA-AGAGTCGGGGAGAGGAAGAGACAG--ACGGACAGGG-AGACAGGGAGATAGACCC----------------AGGACGTTAT--------AGAGGACAGGGATGGCTCAGGGAGCAGCCTGCTTC-AGAGAGGCAGCAGAAAGTAAGATGTTGAGGCTG-CCTGAA-TGTTTCATGAGC s mm5.chr11 118576383 477 + 121648857 ---------TGAGCC-------TGCCCCAGGCTGCCAGAGGCAACATTCTCACATGCAGTAACAGATCTTAATACTCTTCATTATCTCAAGTCACCTTCTGAGGCATGTTTTGGTGTCAAGTGA-GTGTTGTGGAAGC-TGTGATAACACAGTAATTTACTAAGAGCCTTGCTCTGAAGAGCGTGATTATCGGGTGCATCGGA------TGGGTCCCCAGGCACCCATGTCAGAG---------------CACTGTTCCTCTAGCACGGAGCAGGCCCCGCTACGCACCTAGAGATCACCT-------------CCCTTCCATCACTGGCAG-------------------CGACCCTGACTCTCAGAGGTAGCAT-GGCAGGAAACCCCAA---AAGCATCCACCCAGCCCAGAAAGCACAGGGTGCTCAG-AGA----AGGAGACGAAGCA-----------------GAACATAAAAATTAA---------------------------AC--------AGGAGACCCTGCTGCCTCAAATGGCAGCTGACTTC-AGAAAGGCAGCAGAAAACAAGATGTTTAGGCTGCCCTGAA-TGTTTCATGAAC s canFam1.chr18 28782223 573 + 66173745 TGTGTACTGTGAGCTTCACTCCTCCCCCCCCTTATTAAAGGAAACACTTTCAAATAAAGTAACAGA-TTGTATGCTCTTTATTATCTCAACTCACCTTCTAAGGCATGATTTGGTGGCAGCTCAAGTGTTGGAGAAAC-TGCCATAGCAAATTAAT---CTTAGTGCACTGCACTTTAAAATGT--ATATTTTATAAACTAAATCAGTTCTTGTCGTGAGGTATTTACGCAAGGACACTCA-TCCTCTGTCTGCAGATCCCCCACAAAGAACAGACCCTACTGTGTACTCAA---------------------------TTATTACCACTATCCAACTGTTCATTGAAAGCTGTCCTCAACTCTCCTAGCTAATGCAAGCAGAAAGTCACATATGAAGTGCCCGCATCCCTCAGAAAGTACAAGAGGAAAAACAGACGTGAAGGGAGGCAGACACAGACACAGCCGTGGGGGAGATGCAAACCCCCCCCCTTAAATTCTTATTTAAGAATTTATTTCTTAAAAAGAAGCCGCAATGGTTCAGAGACAAACCTACTTC-AGAGAGGCTGCAGAAAATAAGATGTTTCGGTTG-CCTGAA-TGTTTCATGAAC a score=4851.0 s hg17.chr17_random 1723984 38 + 2618010 CTGTGAAAATACCGCGCTGCTTTATGAAAGAGNCGTGG s mm5.chr11 118576860 35 + 121648857 CTGTGAAAATGCTGGGCTGCTTCAGGAGAGA---ATAA s canFam1.chr18 28782796 37 + 66173745 CTGTGAAAATAACGTGCTGCTTTATAAAAGA-ACTTGG a score=193266.0 s hg17.chr17_random 1724022 984 + 2618010 AGAGATGC-TGCAGCTTATCAAAGGGTGGNAGGTACAAACGGGATGTGTTTATAAAGCCNGGTGCCTTGTGCCAGGAGCAGG---GGCCTGTGGCAGGCAGGGATTTAGGGAATGGNTAGGTTCCCTACCAACCAAC-----AAACGGGTCTCTGTTGAAGGGGGAGAAAGTTTCAAGATGGCTTC--TTCCCCTTCACTTGTTTAAAAATAAAAAATTCCTCAC----CAAATGTCAGCTGCGTGTCAGGTTCCATTTGTCTTTATAACAGAGTATCAAGCAGGAGCG-TGGAAATAAATAAACACAGNGGNAGACAACCGACCAAAACTTGCAGGCTCTGGGCTGGGCTGGGCTAGAGGAGGGAAGCCCCANCCCTGCAAGGGNCTGAAAAATAATATTGCAGTTTCGCGTTCAGCACTGTGGCTCTGGCCNCANCTGACATGTTTTCCTC---------TCTTTACTGNCCCCCCAN----CCCCCTACCA--CCACCACTC--------TGGCGCTTCTGGGAGGGATAGGAGCGTGACTTATGCATTCCTTCCT-TCCGAATTGCACAGG-CATCATGGGTCAGAACACCATCTGCGTATATGGGGGAGGGGGCAG--ATAAACCAAGCAGGGCCCCTGCCCTCAGCAGCAAGGCACCTCCNAACTGNCCACACATC--GGTATGAAGGCGCCTTAGGCCAGGGCTGAATGTGGCTGGGAGAGAGGTGTCAAANGAAGGCTGCAGG----GGAGNAGGCAACAGGGCTGA-------ACCAGCC--------------AGGGAAGATGGCATTTTCTCTGGCCACTACAGTGTCTAGTTCATCCCTAGACACCAAAGAGCCCGATAA--TCTCTCCATTTCACCGATGCGCCATCAGCCACGCTCCAAGTTNGAGTAAGTGACAGGCGCAGGACNAGAAGGCCCACTCTGGAATGGTACCCAGGAG-----------GCCTCCTTGCTGTAATTACCTCTTCGCAGGCCCTGGGCTTTTCTGGCTCTTGAATGAGCCTCGGGAGCCCTCCCCATGTCCTCAG s panTro1.chr19 78874350 960 + 82489036 AGAGATGC-TGCAGCTTATCAAAGGGTGG-AGGTACAAACGGGATGTGTTTATAAAGCC-GGTGCCTTGTGCCAGGAGCAGG---GGCCTGTGGCAGGCAGGGATTTAGGGAATGG-TAGGTTC------------CTGAGGAAACGGGTCTCTGTTGAAGGGGGAGAAAGTTTCAAGATGGCTTT--TTCCCCTTCACTTGTTTAAAAATAAAAAATTCCTCAC----CAAATGTCAGCTGCGTGTCAGGTTCCATTTGTCTTTATAACAGAGTATCAAGCAGGAGTG-TGGAAATAAATAAACACAGGG--AGACAACCGACCAAAACTTGCAGGCTCTGGGCTGGGCTGGGCTAGAGGAGGGAAGCCCCA-CCCTGCAAGGG-CTGAAGAATAATATTGCAGTTTCGCATTCAGCACTGTGGCTCTGGCCC--ACTGACATGTTTTCCTC---------TCTTTACTG-CCCCCCAC----CCCCC-ACCA--CCACCACTC--------TGGCGCTTCTGGGAGGGATAGGAGCGTGACTTATGCATTCCTTCCT-TCCGAATTGCACAGG-CATCATGGGTCAGACCATCATCTGCGTATATGGGGGAGGGGGCAG--ATAAACCAAGCAGGGCCCCTGTCCTCAGCAGCAAGGCACCTCC-AACTG-CCACACATC--GGTATGAAGGCGCCTTAGGCCAGGGCTGAATGTGGCTGGGAGAGAGCTGTCAAA-GAAGGCTGCAGG----GGAG-AGGCAACAGGGCTGA-------ACCAGCC--------------AGGGAAGATGGCATTTTCTCTGGCCACTACAGTGCTTAGTTCATCCCTAGACACCAAAGAGCCCGATAA--TCTCTCCATTTCACCGATGCGCCATCAGCCACGCTCCAAGTT-GAGTAAGTGACAGGCGCAGGAC-AGAAGGCCCACTCTGGAATGGTACCCAGGAG-----------GCCTCCTTGCTGTAATTACCTCTTCGCAGGCCCTGGGCTTTTCTGGCTCTTGAATGAGCCTCGGGAGCCCTCCCCATGTCCTCAG s mm5.chr11 118576895 886 + 121648857 GGGGAGGCAGGCAGCTAATCAAAAAGATGTTGATACAAATGGGAGGTGTCTGCGAAGCC-GGGGCCC----ACGCAGGCAGG-AAGGCCTGCTGCAGGCGAGGATGCGGGGAGAGG-CGGGCTCCC----------CAGCAGAAACAG--CTCCACGGAAGGGG--GAAACTTTCTAGATGGTTTC---TCCCCCTCACTTGTTCAAAAATAAAAAATTCCTCACCGCACGCACGTCAGCTGCGTGCCAGGCTCCATTTGTCTTTATAACAGAGTATCAGGCAGGAGTGAAGGAGATAAATAAACAGAGAG--AGACAACCGACCGAACCTCACGAGCTCCGGACT-GACTGG----GGGGAGGTGAGCCTCG-TGCCGCAGTCA-CTAAGAAATAACATTTCAATCT--------------------TGACCC--ATGGACAGATTCACCTC---------TCCTCACTG-CCCCAGAT--GATCCCC-GCCA--CCCCCCCCCCCTCGAATTGGCACTTCTGGATATGACAGATGTTCTAGTGGTCCAAGCCTTCCTGTTTAACCCCCACAGTCCATCCAGGTCCAAAAGATGTTCTGCAC-TGTGGGGGA-GGGGTGG--GCAAAACAACCA-GACTCTTGCCCTGAGGAGCAGGGCCCCTCT-AGCTT-CTACACAGC-------AAGGGAGC----AGGCAGGTACCAGGATGCCAGCTAGAAGGGCGCACAATGGAGAC--CAGACCCTGTTG-AGCCAGCTCAGCTAAG------ACCAGGC--------------ACTACGAATTGCATCTTCTCT-GCCA-------GCCTAGTCCATCTCCACACACCAAATAGCCCTTCCA--TCTCTCT---------------------------------------TGCGTGGCTGCCACAAGAC-----CACACACTGGGGAATGATGCCCAAGAG-----------ACCTCCTTACTGTAATTACCTCTGCTCTGG-CCTGGACCTCCCTGACCCT---GTTGGCATGGGGACTCCT-CCTGTACCTTCCA s canFam1.chr18 28782833 947 + 66173745 GGAGACAT-TGCAGCTCATCGAAAAGATGTAGGTGCAAATGGGATGTGTTCATCAAGCT-GGTCTGT----TCTGCGGCAGGAAAGGCCTGTGGCGGGTGGGGATTTGGGGAAAGG-CAGGTAC------------CCGATGAGGAGCATCTCTGTTCAAGGGGG-GAAAGTTTCAAGATGGTTTTTTTTCCCCTTCACTTGTTTAAAAATAAAAAATTTCTCAC----CAAATGTCAGCTGTGTGTCAGGTTCCATTTGTCTTTATAACAGAGTATCAAGAAGGAGTG-TGG----AAATAAGCACAGAG--AGACAACTGACCACAGACTGCAGGTGCATGAAC-AGCCGGGCTGGAGGAAG----------GGCTGTAATCC-CTGGGAAATAACATTCTAGGGTGGAGTT--------------TGGCTC------CCACGTCTCCCTCCTGCGTGGTTCCTCTAGG-CCCCATATACGCCCCCC-CTCACCCCACCACCC--------TGACGCGTCTGAGTGGGATAGGAG------------GAGCTCCCTT-CACTGATTCCACAAG-CATACA----CTGAATAGCAT----GCATGTGCAGGAGGAGGTGGGCATAAATCAGCCAGGATCCTTGCCCATAAGAGCAAGGTGCCTCC-AACCT-GTACACGTCAAAGAATGAAGGAGCCTCAGGTCATGGTTGAAGGGGGCTCTGGGAA-----------GAAGTCTGCTGA----GTGG-----AACAGGCCTGAGCTATGTACCAGGCTGGCAGCATCCACAACTAGGGCTAGCACATATTCTGGCCGCTGCCACATTTCATGTATCCCCAGATATCAAAGAGCTCCATAATTTCTCTCCATTTCTCCCACAAGCCGTTGGCAAGGCTCAAAGTT-AAAGAAGTGGCAGGAACACCAC-AGAAGGCCCACTCTGGAATGGCACCCAGGAGTCCTCCTACCTGCTTCCTTCCTAAATTTGCCTCTTCACTGGCCCTGGGCTCCCCTGGCTCT-GCGTGCACCTCAGCAGCCCTCCCCTTCCCCCTAG a score=0.0 s hg17.chr17_random 1725006 1 + 2618010 N a score=-100.0 s hg17.chr17_random 1725006 1 + 2618010 N s mm5.chr11 118577782 1 + 121648857 G a score=43769.0 s hg17.chr17_random 1725007 923 + 2618010 CAGCCTGAGGGCGGCCGCCCGCAGCGCCTCCAGCGGCCCTGGGAC-CGTGTCAGAGGAGGGAGGGCGAGGAGGGCAG-GCTGTGG--AGGCCCCGGCCCTGNTCCTTGGTGCT-------GGCGCCCGCTNGAGNTGCCTGCT----GAGCCACTCAGAGGCA-GGGGCCGCCCATGCCGCCACCTTCCCT-CGACATCC-----------GCCTCTGGTCCCNTGCGGAAGGGCAGTGAATACTCCCAGCCCCGCTGTGGCTCCCAACCGAGGTCACTGGGTGCGGAGCATTTGCCGC------AAAGGCCCATCCGAGTAAGGGGCGGAGCC--TAGGGACTTCCCTGGACTCCTGGCTCCTCCTGGCACCCAGAGGCGACCCGAGGTCCCCGG-GGTGGGCACGGGTCTCTCTAGGCCCCAGGCCCCTGAGGAAGGTGGATCAAAGCAATCACCCAGGTTNCCCTTTTTTCTTTGGGGGGANGGNANGGGTGGATAGCTGCTAGAAATGGACAACTCACCCCAGAAAACCCC-GGCCGTGCAAGCGCAAACAGCC--CAGCACCAGTGGCAACCCCTGCCGCACGCACGCAGCCACCTCGCCAGGCCCAGGCTGTCTC---GGCTTGGGTGCGTCC--CTTCAACCGTGCTTCTTGCTCCTTAACCCCTTCAGTGGTCCCCACGTCACCCGCTCTGTCTCCCTCCTGGGGACAGCCTTGCCCTCCCAG------AAGCTGTCAGCCAGGAAATGAAGGGTTAAGCGTTGCTTCCAGGAGTGTGCGGT---GAGCGGTGAGCGAGGCGCCCACGCAGGAAGGCCTCCAGTCCTGGGGGANGGGNGCNGGGGGGGCNCAGCCTCGGTCCTCGGCCAAAGGGAGCTCCTCGCCCGC---AGGAGGCGGAGAAGGAAGGCGCGC---CGGGATGGTTCTAAGAAGGCTNCCCCNTCCTCCGCCCCCGCCATGCCGCCCCCAC----GC s mm5.chr11 118577783 827 + 121648857 CAGGATGAAGACTAATAAGCCCCGGATCT-CAGTGTCCACAGGACACAAGACAGGCAGAGGTGGCAGAAGAGTGAAACGCTGCAGCTCGGCCCTAGCCCTG-TCCTTGGTGCT-------GCCGCCC-------------TCT----GTGCGGCTGCGTGGCA--GGTCAGCCTTTGCTCCTGAC-------CAGCGTCT-----------G--TCTGGTCCC-TGCTGAAGGGCAGTAAATTCACCCAGGCCTGCTGCGGCT-CTGCCTGAGGTC-------GTGGAGCCTTTGCAGCGAAGGTGAAGGCACAGCATTGCTAGAGGCCCGATCTATAGGGACTTTCCTAGACTCTGGGCTCTTCCT----------ATAGACCCAAGACTATCTG-GTTG-------------------TTTGGGCCTCCGAGAAGGATGGTACAGAGTAATTGTCAGGGTT----CTCTTTCATTAGTGAGAGTGGGAGGGCGGGCAGACAGTTGGAAACGTTGATCTATACCAGAAATCCTCAGGGCTTG---GGGCAAACAGCCTGTATGACC--TGGCCAACCCT-CCCCTGGCACTCAGCTGCCTCCCTAGGAGCA-----TCTAATGGGGTCTGATGCGCCCCGCTTCAGCTCTGCCTCAC-CTCCCTAGCCTCCT-ATGGGTTCCCCCATCTTCCCCTCT---------------ACAGCCCAGTGTTCCCAGAGCTCCAAGC--CCAGCCGGGAAAGTAGGGGTTAAGCGCTGCTTCCCCGAGTGTGCAGT---GCGCTT-------AGCTCCCACGCAGGGAGGCCTCTGGTCCCCGGGGAGGGCGGAGGCGGCAGCTCGATCCTCCCTCTGGGCCCAGGGGAGCTCCTCGCCCGC---GGGGGACGAG------------------GGGCTGGCTCTGAGAAGGCGCCCC------CTGCCCC--ACATGCCCACCCTACAGCGGC s canFam1.chr18 28783780 868 + 66173745 CAGGGTGAGGGCGAGCGCCGGCAGCGCCCCCAGCGGCCCCAGTAC-AATGTCGGAGGCGGGAGGGCG--GAGCGCGG-GCAGCG---CGCCCCTGGCCCTG-TCCTTGGTGCTGCTCCGGGCTGCCC-------------GCTCAAGGAGCC-CTAGGTGGCAGGGGGCCGCCCAGGCCGCCgccttccctccagccttccctccagcctGGCCTCTGGCCCT-TGCTGAAGGGCAGTGAGCACACCCAGCTCTGCTGCTGCTCCTGTTGGAGGGCACTGGGCGAGGGGCATTCAGAAT-GAGCCAGAGGCCAGGCTGGG--GGGGGAAGGG----GAGGGGGCTTCCGAGATTCCCAGCTTCTCCCAGCATCCTAAGACAACATAAGGCCCAGGGAGGTGGACAGAGGTCTCTCTAGGCCCCAGATCCCC--GGAGGGTGGGTCAGATAAATCGTTTAAGTC----CTCTTTTCATGGGGGAAG---------AAATCGCTGTTGGAAATGGGCAACTCATGCCAGCAAACCCC-AGCGGCTCCAACGCAAACAGCCTACAGG-CCACTGGCCAGCCGTCCCCCTTACACACCGCTGCCTCACCAGGCCCAGACTGGCT----GGCCTGAGTACGCCC--CTGTCACTCTGCCTCTG-CTCCCAAAATCCCC-AGGGTTTCCCACCTCACCCACATTGTT------------ACTACC-----CTCCCTG------AAACTCCTGGCAGGGAAATGAGGGGTTAAGCGTCGCTTCCAGGAGTGTGCGGTGGCGAGCCT--------GTGCCCACGCAGAGAGGCCTCCAGTCCCCAGGGAGGGATGAGGGTGG-----------------CAGCCTCGAGGTCCTCCTCGTTCACCAGTGGAGGCGGGAAGGGAGGGGGTGCACATTGGCTGGTGCTTAGGAGGCGCCCT---CCCCTGACCCTGCCCTGGGC------------- a score=8776.0 s hg17.chr17_random 1725930 87 + 2618010 CC---CCACCCCGCCGGCGCTCANGTGACCTGGGGCGCCCCTGCAAGAGGCCCATACCCNGGCTTTCATCAGGCAGCGCCTTCTCGACAA s panTro1.chr19 78876434 85 + 82489036 CC---CCACCCCGCCGGCGCTCA-GTGACCTGGGGCGCCCCTGCAAGAGGCCCATACCC-GGCTTTCATCAGGCAGCGCCTTCTCGACAA s mm5.chr11 118578610 52 + 121648857 CCTGACCACCTCGCCAGCGCCTC--------------------------------------TCTTCCACCAGCAGGCGCCTTCTCTACAA s canFam1.chr18 28784648 69 + 66173745 --------CCCCACTGGAG------------GAGTGGCCCCCCTACGTTACATGCACCC-CACTTTCATCAGGGGGTGCTTTTGCTGCAA a score=60496.0 s hg17.chr17_random 1726017 132 + 2618010 CTTTTCTCCCTNCTCTCCCCT-----------------CACAATTTTTGCTCAC---CTGGAGGGNTCGGTTTTTAATTAGTGTAATATCCCCGTGAACAACGCAGCCTAATTAAGACATCCGTCCCGAATCCGCGATGCACACTTAATGAG s panTro1.chr19 78876519 130 + 82489036 CTTTTCTCCCT-CTCTCCCTT-----------------CACAATTTTCGCTCAC---CTGGAGGGTCTGGTTTT-AATTAGTGTAATATCCCCGTGATCAACGCAGCCTAATTAAGACATCCGTCCCGAATCCGCGATGCACACTTAATGAG s mm5.chr11 118578662 120 + 121648857 CT----------TTCTCCCTT-----------------CCCAGTAGTCGCTCAC---CTGGAGGGTCTGGTTTT-AATTAGTGTAATATCCCCGTTACCAGCGCAGCCTGATTAAGACATCCGCCCTG-ATCCGCGATGCGCACTTAATGAG s rn3.chr18 80652506 151 + 87338544 CTTTTCTCTTTTTTTTTACCTAAAGGCAAAAAAGTAAATCCAGTTTCTCTTCACAGATCCGCAGGCCTGGTTTT-AATTTGCGCAATAGTCCTTTTGATAACAATGCCTAGTTAAAACATCCATTAAAAGTCTGCAGCAGGCATTTAATGGG s canFam1.chr18 28784717 127 + 66173745 CTTTTCTCT---CTCTCCCTT-----------------CACAGTTTTTGCTCAC---CTGGAAGGTCTGGTTTT-AATTAGTGTAATATCCCCGTTAATAATGCAGCCTAATTAAGACATCCGCCCAA-ATCCACTATGCACAATTAACAAG a score=200664.0 s hg17.chr17_random 1726149 1092 + 2618010 CAGGTTCTGCCGCAATGTTTATACNTTTT------------TTTTTCCA---------TTATGTTTTGCAGACNCAGTAAAACCGAAGCCGGCTTCCGGCTGAAAGACCTCATTACGGGCGACCCCACTCCATTAGCCTCCTACCTGCTCCACGCTAAGTGCCCGGGGCGCCCGGGTGCATGCCCAAGGCGTCCCCGAGTCCAACCTGCGTNTTGGAGCAGGAAATTAGCAA-CCTGCGCG------CCCGAGAAGCGACTTCACCACCAGCTGGGGCAGGAAGGGGGACTTAAACCCAG-----GGATGGATCCCTTGGGTCTCTGTCCTTAGCCTCCACCNGTNGGGGTGTCTCGCGCGTC--GGGACTAGCGGCTCCGCGGGACTCCTTTTTAAAAGTGATCATT---AAATAAATCAGGTACCTCGCCAAAGCTGGAACGGAAAGGGGAG--GGGGAGGCAGCTCTGTTGTCCAGGAGTTTCTCCCCNACCTCGCTGGGCCCCC--------GCCCCCACCAGTGGA--------------CTCCGGGAACATC-CCA-----CCCCCACCCTACGTGATACCAGGGATCCCAGGGCCGCT-TGGGGACCCGACAGGTTCCCAATGCCCCTCCNACGCGGGGCGCCGCGTCTCGGTCCCCGCACC---------------------------GACACTGC-AGGGCTGCGCGCCAGGGGAGGCTCCGCGTCCCGGGGAGGGAGGCTGCGACCCCCAGCACCAAAATGACCACTGGCCTCGCGCCACCCCGAGACGCCACAGAAGACCACCTTCCCGAGCGTGCGAGCCCAACACGCCCCNGGGCGAGCCCCACCACCGCCCGGGGCCACCAGGGCAGAAAGTTTGGGCCAGGGGCGTGCCCG-------------GNCTTTCCCAGCCCGGCCGCGCTGCTCGAG----GCCCTGGGGGTGNGCCGA----------GGCTTCA-----GAGAGGCAGCCTCTGCTCCCGTTCCAGCCTTCCTATCGTGCTTGGG--GACTCGGCCCGGAGCG-CCCCCAGCCNCGCCCCCTGTAGGGCCCTGCGC-----GCCGCTCGCCCCTCGCTGCTCGGCCCCCGCGCACACCGCGGTGCTGCGGGCCCCGCTCCTATTTGGGGAGCNTGTGNGCAGCCCCTTC------NCTCCCCNACAACTCCTTTGGGTCATCAA-----CCTCTCAG-CGACCCTCC s panTro1.chr19 78876649 1077 + 82489036 CAGGTTCTGCCGCAATGTTTATAC-TTTT------------TTTTTCCA---------TTATGTTTTGCAGAC-CAGTAAAACCGAAGCCGGCTTCCGGCTGAAAGACCTCATTACGGGCGACCCCACTCCATTAGCCTCCTACCTGCTCCACGCTAAGTGCCCCGGGCGCCCGGGTGCATGCCCAAGGCGTCCCCGAGTCCAGCCTGCAT-TTGGAGCAGGAAATTAGCAA-CCTGGCCG------CCCGAGAAGCGACTTCACCTCCAGCTGGGGCAGGAAGGGGGACTTAAACCCAG-----GGATGGATCCCTTGAGTCTCTGTCCTTAGCCTCCACCG--CGGGGTGTCTCGCGCGTC--GGGACTAGCGGCTCCGCGGGACTCCTTTTTAAAAGTGATCATT---AAATAAATCAGGTACCTCGCCAAAGCTGGAACGGAAAGGGGAG--GGGGAGGCAGCTCTGTTGTCCAGGAGTTCCTCCCC-ACCTCGCTGGGCCCCC--------GCCCCCACCAGTGGA--------------CTCCGGGAACATC-CCA-----CCCCCACCCTACGTGAGACCAGGGATCCCAGGGCCGCT-TGGGGACCCGACAGGTTCCCAATGCCCCTCC-ACGCGGGGCGCCGCGTCTCGGTCCCCGCACC---------------------------GACACTGC-AGGGCTGCGCGCCAGGGGAGGCTCCGCGTCCGGGGGAGGGAGGCTGCGACCCCCAGCACCAAAATGACCACTGGCCTCGCGCCACCCCGAGACGCCACAGAAGACCACCTTCCCGAGGGTGCGAGCCCCAGACGCCCC-GGGCGAGCCCCACCACCGCCCGGGGCCACCAGGGCAGAAAGTTTGGGCCAGGGACGTGCCCG-------------G-CTTCCCCAGCCCGGCCGCGCTGCTCGAG----GCCCTGGGGGTG-GCCGA----------GGCTTCA-----GAGAGGCAGCCTCTGCTCCCGCTCCAGCCTTCCTATCGCGCTTGGG--GACTCGGCCCGGAGCG-CCCCCAGCC-CGCCCCCTGTAGGGCCCTGCGC-----GCCGCTCGCCCCTCGCTGCTCGGCCCCCGCGCACACCGCGGTGCTGCGGGCCCCGCTCCTATTTGGGGAGC-TGTG-GCAGCCCCTTC-------CTCCCC-ACAACTCCTTTGGGTCATCAA-----CCTCTCAG-CGACCCTCC s mm5.chr11 118578782 1070 + 121648857 CTCAGTCTGCCATAATGTTTGTAC-TTTT------------TTTTTTCA---------TTATTTTTTGCAGAC-CAGTAAAACCAAAGCTGATTTCT-GCTGAAAGACCTCATTACCCGAGACCCTACTCCATTAGCCCCGTACCTGCTCT-------GGACCCTAGACTCCCCGATGCGCTCCCGAGGCGTCCCC-AGCTTAGCCGGCGT-TTGTGACAGAAAATTAACGACCCTGCGCG------CACCAGAAGGCACTTCACCTCCAGCCGGAGGAGGAA--GGGACTT--GCCCAGAAGAAGAAAGGATCCCTC-AGTCCCTGTCCATAGCTCCCACTG---TGGGTGTCTCGCACATCGAGAGACTACTGGCGCCACCGGCGTCCTTTTTAAAAGTGACCATT---AAATAATTAGAGTGCGTCTGAAAAGCAGAATCCAAAAGGGGGAGCGGGGATGTGGCTCGGCCATCCTGGA--CCCTCCTC-ACCTCGC--AGCCCACACACACTAGCCGACGTCAGTGAG--------------CTTCGTGAACAGC-CAACCAACCCCCAATCTCATGCAAGACCCAAGATCCTGGGTCTGTTCCAGCTGTCTAATAGGGTCTCAATGCCCCCCCCCCGTGCTG-GTCGCGTCTTGCTCCGGGTACAGACTGGGTGCGGGACCTGGGTGGCCAGGACACTGA-AGGGCTGCATGCCAATGGA-------------TAGGGGCGAAGCTTCATCAGGGAGCTCCCAGAGGACCGCCGGCCTGAAGCCACCCCCTGAC----------ACCTTTCTCCTGAAGAAGACAGCCCC----------AGGAGAATCCCACCACCTCCCGGGGCCA-CAAGTCAGAAAGTTTGGGCTAGGGTTGTGCAGGCCACCTTAGCAAAG-CTTTCCCAGCCGGGCTG------TCCCA----GCCCTGTAGCTGTGCCAA----------AGC---------GAGCAGTAACCTCCG----------ATCCTTGCTCACGCCTCTGGGAAGACTCGGCCCCGAGCGCCCCCCAGCT-CGCGGACTAGAGAGCCCTGTGC-----GCCACCCGCGCCT----------GTTCCACGCGTGCCGCTATGCTGAGGGCTCTGGTCCTCCCGAGAGAGC-CGAG-GAGGACCTCAG------TCCTCCC-ACAACTCCTTGAGGTCATCAGTCAGTCCCCTCGGCCGGCTCTCC s canFam1.chr18 28784844 1011 + 66173745 CAGGTTCTGTGGCGATGTTTATAC-TtttacttattttttatttatttatgtatgtatttatCTTTTGCAGAC-CGGTAAAACCAAAGCTGTCTTCTGACTGAAAGACCTCATGAAGGGCGA--------------CCTGGAATCTGCTAGGCGCTGAGTGCCCGGGGCAACTGGGGGTGCACCCAGGGCGTTCCTGAGCAGGGAGGGTGT-TT-CAGCAGGAACTTCGTGACCCTGCGCGTGCAGATCCCTGACTTCACTTCACCTCTAGCTCGGGGTG-----GGGGTTC--GCCTGG----GAGATGGATCC--TGGGTCCCTGTCCTTCACCTCCACCA--CCGGGTGT-TCACA-GGC--AGGAAGAGCGGCGCCCCAGGAGTCCTTTTTTAAAGTGACCACTAAAAAATAAACCCAGTCCCTTGGAAAAGCTGGAA----------------------AGCTC--TCACGGAGGAGTTTCCCTCA---CTCGGCAGGACCCT--------GTGCCCTGTGGCGGGAGGGAGCTCCAGACTCCCAGGAACACCGCCA-----CCCCCACCCC-CAGGAGACTGTGGATCCGGGGGCTGCGCTGG----------GGCGCACAGGGTCGGTCC-TCGGCAGGCGCCGCTCCCTCGATCTCACACG---------------------------GACAGGATGAGGGTCCCGC----AGGGAGGCTCCGCGCCCGGAGGAGG----------------------AGAGGACCTCAGGCCCTGTGCCTGCCGGGGGCACCGCGGAGG--CAGCCGCCCGAAG---------------------GGACGAGCGCCACCGCCTCCCGGGGCCGCTGGGGCAGAAAGTTTGGGCCAGGGTTGCGCCCG-----------------------------CCGCGCGGCTCCAGCTTCCCCCGGGGGCCGTGTTGGCCCCTGGAGCGGCCACAGCGGGGAGCAGCAGACCCGGCTCGGG--------------------CTGGA--GACTCCGCTGGGAGCG-CCCCCAGC--CGCCCCCCGGAGGGCCCCGCGCTGCTAGCCACCCCCACCGCGGCGCCTA-CCCTCGCGCACGGTGCAACGC--GCGGCCCCGGGGCTCTTCAGGGAGC-CGTG-GGAGCCCCTTCCTCCCTTCCACCC-ACAACTCCTTTGCGTCCTCCA-----CTCCTCGCGGGAGCCTCC a score=24878.0 s hg17.chr17_random 1727241 155 + 2618010 TTTCAGAGGACCCCGGCAGGGCTCTCTCCGGGCCTGGGTGCCGCGACAGACGCACGTTGCACCACCGCCNGGGTCGCC-AGCCTCTCTCCCACCCGCGCGGGCTCCGGCTGCCTGCTCGGACGCGCCCCGCGGGGCCGGGATCTCCGCGCGCCTCT s panTro1.chr19 78877726 155 + 82489036 TTTCAGAGGACCCCGGCAGGGCTCTCTCCGGGCCTGGGTGCCGCGACAGACGCACGTTGCACCACCGCC-GGGTCGCCAAGCCTCTCTCCCACCCGCGCGGGCTCCGGCTGCCTGCTCGGAAGCGCCCCGCGGGGCCGGGATCTCCGCGCGCCTCT s mm5.chr11 118579852 149 + 121648857 TCCTCCTGGACCCCAGCAGCCCTC---CCGAGCCTGAGGATGGCGAGAGTCGCACGCCGTAGCGCATCA-GGGTCGCC-AGCCGTGCTTCCAGCCCTGCGGGTTGGGGCCGCCT-CCCTGATGCGCCCCGC-GGGCCGGGATCTCCGTGCGCCACG a score=4183.0 s hg17.chr17_random 1727396 100 + 2618010 GCCTCCCCCCG--CCGGGGAGTTCCCCGCGCCGGGCATTGTgccgccgccgccgccgccacagccaccaccaccgccaccgccaccgccactgccaccgcca s mm5.chr11 118580001 78 + 121648857 GCTTCCCCCCAATCCTGGGAGTTCCCAGAGCCGGGCATTGTGCCGCCGCCGCCG------------------------CCGCCGCCGCCGCCGCCACGGGCA a score=8294.0 s hg17.chr17_random 1727496 327 + 2618010 cGCAGCGCGCGGGACTCTCTGGCGTC---------TCCATGGAGCCCGA---CCCCCGGGCCTTCCCATTCA----CAAAATCGCCCCTCTGG------CCCACGGCCGGACAGAGC-----GTCCAGACCCCAGCCCCGGAGGGACCCAGGGACCCCGACCCCGCGCAGGGACCC----CTGA-CCCCGAGGGCGCCACCCCA-CCCCACGCGCCCTNCGGGTC---AGCCCCGGCCGCGCTCAGCAG------------------CCCGCCTCCCACTGCGGGGTCCCATGCGCCCCTCCGC-GGCCATGTCCCCCTCCCCCAG---CTCNAGCC---------CGATGGGAATGACCGCCGCAGAGCGAGGCGGGCGACGA-GGCCAGGCTA s mm5.chr11 118580079 348 + 121648857 CGCAGCGCGCGGGACTCCCCGGTGTC---------TCCATGGAGCCTGA----CCCCGGGCCTTCCCATTTA----CAAAATCTCCCCTCTGGTTT---CCCAGGGGAGCCCGGAGCCCGGAGCCACGACCCCAGCCCCCGCACAACTCGGGAACCCCGACCTCGCGCGCAGACCC----CTGACCCCCAAGGGCGCCACCCCATCCTCGCGCGACCTCAGGTCT---GTCCCCAGCCACGCTCCGCAGCCCCGCGTCCTCGCCGGCCCCGCCTCCCACTGCGGGGTCCCGTGCGCCCCTCCCCGGGCCGTG-------CCCACAG---TCCCAGCCGGCCCCTCGCGATGGTCGTGAC----------CGAGGTGGAAGCCCAGGGTCTGGCTA s danRer1.chrNA 86215551 311 + 390413307 CCCTCCACCTAGGGGCCTCTGACCCCAGCAAGCTACCCAGGGGTCCACAACTCTCCCTGGACTTGCAGTAGAGGCCCCAGGGTGCCCCCTTGGCCTCCACCTAGGGG---------------CCTCTGACCCCAGC----AAGCTACCCAGGGGTCCACAACTCTC-CCTGGACTTGCAGTAGAGGCCCCAGGGTGCCCCCTTG-CCCTCC---ACCTAGGGGCCTCTGACCCCAG-CAAGCTCCCCAG---------------GGGTCCACCTCTCTCCCTGGACTTGCAGGATTTTCCCCAA-G---ATG-------CCCCCTGGCCCTCCACCT---------AAATGCCTCTGAC---------------------CCCA-G--CAAGCTA a score=17179.0 s hg17.chr17_random 1727823 58 + 2618010 CTCACGGGCTCAGCGCTCCCCGCGGCAGGTGACTGGGGGCCGGCGGCCATGCCCCGGC s mm5.chr11 118580427 58 + 121648857 CTCACGGGTTCAGCGTTCCCCACGGCAGGTGACGGGGCCCTGGCGGCCATGCCCCGGC s canFam1.chr18 28786483 58 + 66173745 CTCACGGGCTCAGCGCTCCCCGCGGCAGGTGACCGGTGCCCGGCGGCCATGCCCCGGC s danRer1.chrNA 86215862 58 + 390413307 CTCAGGGGTCCACCGCTCTCCCTGGTCTTTCAGTAGAGGCCCTGGGGTACCTCCTGGC a score=52987.0 s hg17.chr17_random 1727881 881 + 2618010 TGCATCCCGGCCGCCGAGCGGGCAGCGGCGTCCTGGGGCCGCACAGGCACCGGCGAGCCGGCGGCAAGGGGCGCGCGAGGCCGGGCTCGGGCGGCAGCTGTGGCAGCTGCTTCTCCTCCGACCACGCGAGCTGCTGGGGCCCGGCT--------------GGGGCCGCTGTCCGAGGAGG-TTCTGCTGGCTTCGGAGCA---GCCCCGCGCTCGCTCTTCCCTNCGCCTCctctctctctctctctcctccctcctctctccnccctcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgctctccgccctccttctctctctctctctctctctctctctcGTTCCTCTGGCTCGTTCGGCTGGAGCGAggcggcagcaggagcacgcggcggcggcgcgggcggcggtggcagcT---CGAGCGGAGCGCGCAGC---GCGCGGCATGGGAGGGGGCTCTGGCTGTCGCGCGGCCGGGGAGGGCGGCGGAGCGGGGAGAGCCATGACCGGGTGGGCTTCGGCGGTCAGCACCCTGCAGCCTTCAGCGCCAACTCCTCGGGGCAGGGGCACAGAAGANGGTGGGGTACACACGGAAGATCCCAGAACCCAGTGCTGCCCTGGTCCCTTCAAGGG--------CAGCCCCAAGCCCGCTGC----------CCCTCCCCACCTCCAAGCTATCTTGGGGGCG-----------GATCAACCCAGGTGACCCTTAACAGGACCCCTGCCCTTGTGCCTCGCTGTCCCTGGGGGCCATTTTTCNTTTGCCAGGNCCCAGGGATCCCCAGCAATGGGACGTGGTCACCAAGCATCAGGGACGAATGCCACCCCANCCCCGCATGCCATGCCATGCCTTTGAGTTGCCCACATACCCCAAA s mm5.chr11 118580485 795 + 121648857 TGCATCCCGGCCGCC----------------------------------CCGGCGAGCCGGCGGCAAGGGGCGCGAGAGGCCGGGTTGGAGCGGCGGTGGCTGCCGCGGCGTCTCCGGAGACCACGCGAGCTGCTGGGGCAGGCGC--------------CCGACTGCTGTCCGAGGAGGTTTCCGCCGGTTCCGGAGCAACGGCTCCGTG------------------------------------------TCCCCGCTCCGCTTGCCTCGCCGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCACCC----------------------CCCCCTCGTTCCTCTGGCTGGCTCGGCTGAAGCGAGAAGGCAGCAGGAGCACGCGGCGGCGGTGGCGGTGGTGGTGGCGGCTGCACGGGCGGAGCGCGCAGCTCGGCGAGGGA-GGGAGGGGGCTCCGGCGGTCGCGCGGCCAGGGAGGGCGGCGAGGCAGGGAGGGCCGCGAGCCAGCTGAATGTGGCCACAGGAGCCCTGGAGTC-CCAGCTCCAGCCTTGGAGAACGGGGATGCGTAGGCTGGTGAG--ACTTGTAGGGCACCCTAGAGCTCAGAAGGAGCTGGGCTCCTCCGAGCT--------CACCACCACCACCACCGCTGTGGTCTCACCTCCCCTTCCTCCCTCCCTTCTTCTGGGCGACCTCAGTGTAAGTCATCACTAGCAACACTTAGCAGGACCCCTGCAC-----CCTCGTT-CCACTGGGACCGGTTTCTC--TCGCTCTG-CCCAGGGGTCCCTAGAAA---GACTTGGTCGCTGAATGGCAGGAATGGATGTCCCCTCCCCCACGCCTCTCCAGCTAG---TCTGCAGCGCCCGCGCCTAACTGG s canFam1.chr18 28786541 731 + 66173745 TGCATcccggcc-ccgagcgggcagcg---------------------------gagcgggcggcgaggggcgcg---ggccgggct-------cggcggcggcggccgcgTGTCCTCCGAGCGGGCGGGC-GCTGGAGCGgggccgggccgggccggggcgggcGGCTGTCCGAGGAGG---CTCCCGGCTCCGGAGCT---GCCCCGCG---GCTCGGCGCTCCGCGCTCGCTCCTGCTCG----------CCGCCGCCTcctctccctctgctcccctccctcccgccctccttctccctctctc-----------------ctccccctttc-------------------------gctctctccctctcccCGGCTCCTCCGGCTCGCTCGGCTGGAGCGAGGAGACAGCGGGAGCACgcggcggc---------ggcggcggcggcT---CGGGCGGAGCGCGCAGCGCGGC-------GAGGGGGGGCTCgggcgg-agcg-ggccggggacggcggcggggcggggcggggcggggG------------GGC-----GCACCCTGGCGGCCGCTGCGCTGGCCCGCGGAGCCCCGGCGGGGGAGGA--GTGAGCGAAGCGCAGGGGTCCCCAGGGCCCGGAGCAGCCC-GGTCCCCGCAAGCGCCGCCCTCCAGCCCTGGCCCCGCCTC------TCCTCCCTCCCTCCCTCCCGCCTGCCCCCGGGGCG-----ATCGTGGGCC------GGCAGCTCCTCGGAGGACCCCTGCCC-----TCCCACC-TCCCGGG---------CTC--TGGCCCTG-------GGCCTGCGGTGG---AACTCAGGCAC-----AGCGGGAGTGAATGCCCCCCTACACTCCTCTTCCA---------CTTG----GTCCACAGGCCTCCCA a score=1579.0 s hg17.chr17_random 1728762 77 + 2618010 CC-----------CCCTCA-CTAGGCCCAG------GTGCCCTGACTTCCTGGAGGACCACTGGAAAGGAAGGG----ATCGGGCCCACTCCG--------TGCTGT----- s mm5.chr11 118581280 105 + 121648857 CCACTGGGGAAGACCCTTA-ATAGGCCTGGAGTTCCATGCCTTGCCTTCCT-GAGAATCACAGAGCAGGCGGGGAGGCAGGAGGCCTACCCTGGAACAGGACACAGG----- s rn3.chr4 155554323 77 + 187371129 CT-----------TCCTTA-CCCAGCCCAG------GTGCCCTGACTTCTTCGGACATCAGAAAAGAAGAAGGA----CTTGGGACCATGTGG--------TACTGT----- s canFam1.chr18 28787272 85 + 66173745 CT-----------CCCTTACCTAGGCCTGAAATTCAGTGCCTTGCCTTCCTCCAGATGGAGAGTGAAGGGGCCA----CACAGGGCCAC------------TGCTGGGGTGG a score=2615.0 s hg17.chr17_random 1728839 300 + 2618010 TAGTCCAGATTGGCC---------AACCCAACCCATTTAAACATTTCCACCTGTGCCTGGCTGGAGAGGAAGGACTGTGGGAGGTCAGCTTAGGATTTCCCTAAAATCAAAAGATCAGGTAGCTCCTGTCCCCAGTCCCAGCCTCCCCCAGCATCTAGAGTAAGGGGNCC-----TGGTGTGAGTTCTGGGAGGGTCTCTATCCTTGGTGCA--GAGGGAGCAGGAGAGCAGAGG------CTGAGGACACAGTGGAGTGGGGACCCNTCTGGAAAGGCAGGA-GAGATCTATTGCTGGGGTCAGCCCACCACTGGCACACAA s mm5.chr11 118581385 242 + 121648857 GAGGACACACTTGTCCCCGCTGATAATCCTATGGCCTTAAATATTTCCATCCAGGTCAGTTAGGAGAA-------------------------------CCTAAAACCAGAAG--------------------AGTTCCAGCCTCCCCCTA-ACCCAGGGAAAGGGAGTCTAGCGTGGTCTGAGGTCCGGCA---TCTCTAGTCTTGGGAAAAGAAAGGGGTTGGGAGGCAGGCATTGCCTCTGAG----CTGTCAAGATGAGACCC--------AGGTACAA-CAG---------TGGGGCTAG----TTACTGGCATTCAG s canFam1.chr18 28787357 270 + 66173745 TTCTCCAGATTGGCG---------AAGGTAACCTATGTAAACATCCCTGCCCTGGCCTAGATGTGGGGCTGTCACTGTGGGAGGTC-GCCTAGGATTTGCCTCAAATCAGGAGAGCAGGTTGTCCCTGTTCT-TACTCCATCCTCCCCCA--ACCTGGGGGAAGAGGCCC-----TGGTTTAGGGGCTGGGG----------------------AGGGGAGAAGGAAAGCCAAAG------GTAAGGGT-GGGTGGAGTGGGGACCC-TGTGGGCTGGTGGGATGAGACCCAC---AGAGGGCAG--GAATGTCAGCACCAAA a score=0.0 s hg17.chr17_random 1729139 12 + 2618010 CACNCAGAAGTG a score=-330.0 s hg17.chr17_random 1729139 4 + 2618010 CACN s mm5.chr11 118581627 3 + 121648857 C-CC a score=2292.0 s hg17.chr17_random 1729143 8 + 2618010 CAGAAGTG s panTro1.chr19 78879697 8 + 82489036 CAGAAGTG s mm5.chr11 118581630 8 + 121648857 CAGAAGTG a score=158769.0 s hg17.chr17_random 1729151 769 + 2618010 GGCAAGAAGGTCTGGNACGGTCCCAAACAGGTTTAGGCAGG---AGGCTGA--GTAATCAT-TT----------CCAAAACAAAAGACATTC-TGGTGCAGCAACCAG------GCTGGAGAAACGAG----CCTGCANCCATCGAAGGACATTTCCAAATTA----------------------CACACAAACA---------------GATCCAAACCCGTCCCCATGTCACTTTTNGCTCCNTGAAGGCTGCTCCTGGAACAATTAGCCTCCTCCTCGCACCTGACTGTCCTGCTTTTCTGTGTGAGGTGAAAAGCACATCATGGAATCTGGGGTTT---NGGTAGGG-GCCTGGAAGACCCAGAGGCCAGGAAGAGGGGAGTATG---GATTTGGAGCTTCTCGGTAGTAGGGGCTCTGGGCTGCTGGCTGCCCCCCCTGCAGGGC-AGCAGAGACGGTNG-----------GCCAAGAC--AGTGGCCGCTGCCCACTTATGAGCGTCATGCTTTTAATTTCTGGCCCTCCAGCCCGTCTGGGTCATTGATCTGTCTTGGCCGGTGGGAATCGTGTTATACAATTCCAAGCATACAGCNTAAAC-AGCCCCACANGCTAACCACCAGATAAATGCCGTGTCTACGAGCAAGGCAGCCGCCTGGTTGACTGAACTTTCCCCTGCCACCGGANTTTGAAATGGCGCATTCCAGCTCTAAAGCCCTAATTNGGGCCTCTTGNGTTCTCTGCTGTCAGATGGTCCAGGCTTTCGTGGCCTCCAACTCCCGGCTGGGCCCAGCCACTGCCTGGCAGGCACCTGNTCTCCCTGCAGGCAGGGCTCTTGCCTCGCTG s panTro1.chr19 78879705 769 + 82489036 GGCAAGAAGGTCTGG-ACGGTCCCAAACAGGTTTAGGCAGG---AGGCTGA--GTAATCAT-TT----------CCAAAACAAAAGACATTC-TGGTGCAGCAATCAG------GCTGGAGAAACGAG----CCTGCA-CCATCGAAGGACATTTCCAAATTA----------------------CACACAAACA---------------GATCCAAACCCGTCCCCGTGTCACTTTTG--TTCCTGAAGGCTGCTCCTGGAACAATTAGCCTCCTCCTCGCACCTGACTGTCCTGCTTTTCTGTGTGAGGTGAAAAGCACATCATGGAATCTGGGGTTT----GGTAGGG-GCCTGGAAGACCCAGAGGCCAGGAAGGGAGGAGTATG---GATTTGGAGCTTCTCGGTAGTAGGGGCTCTGGGCTGCTGGCTGCCCCCCCTGCAGGGC-AGCAaagacggtggccaagacggtggccaagGC--AGTGGCCGCTGCCCACTTATGAGTGTCATGCTTTTAATTTCTGGCCCTCCAGCCTGTCTGGGTCATTGATCTGTCTTGGCCGGTGGGAATCGTGTTATACAATTCCAAGCATACAGC-TAAAC-AGCCCCACA-GCTAACCACCAGATAAATGCCGTGTCTACGAGCAAGGCAGCTGCCTGGTTGACTGAACTTTCCCCTGCCACCGGA-TTTGAAATGGCGCATTCCAGCTCTAAAGCCCTAATT-GGGCCTCT-GGGTTCTCTGCTGTCAGATGGTCCAGGCTTTCGTGGCCTCCAACTCCCGGCTGGGCCCAGCCACTGCCTGGCAGGCACCTG-TCTCCCTGCAGGCAGGGCTCTTGCCTCGCTG s mm5.chr11 118581638 736 + 121648857 AGCAAAGAGG-CTAG-ATGATACCCAAAGGCTTTAAACTGG---ATCCAGA---TACTGTT-CTATATGAAAGACGAAAATAAAAGACAATCACCATGCAGTGCCTGG------ACTCTGGGA---------CCTGCA-CTCTCAAAGGACATTTGCAATCTAAAAAACAAAAAACAACAACAACAAAACAAACAACAACAACAAAACATGATTAAAAAACAAGCCTGATACACG------TTGCTGGATGCTGTTTGTAAAACCATCAG----CTTCTTGCACCTAACTAAGC----TTCCAGTGTGAGGC-----ACATACCACGGAGCCTGGGGCCCTGTGGGTAGGGCAGCTAGA-----CAGAGTAGAGAAGAGGGAGAATAAGAGAGGCCCTGAGGTGCTCTCTGGCTTG----CTGGGCTGCACACTGCCTTCCCTACAGAGTGAGGGCAGACGGT-------------GTCCAGGCTGAGTGACTGTTGCCTTCTCAGGA-------GCTTTTAA-TTCTGCTCCTTCGGCCTGTCTGGGCCATCGATCTGTCTTGCCCAGTGGGAATCACGT-----GCTTTAGAGCACGTAAG-CAGTCGAGTCCTGCA-GCCGA-----ATATAAATGCCTTGTCT-CTGGCA---CAGTCGCAAGGGTCCCTGAAGCGGCCCTAGCC-CCAAA-TTTGAGATGGCACAGTTCTGCCCCCATGGACCAACT-GTTTCTCT------CTGTGTGGCCTGGTGATCCAAGCTTTCATGGCATGGGACTGCTGGCTAGGCCCATCCA------------CACCAA-TCTC----TAGGCTG---TCTTGCCTCTCTG s canFam1.chr18 28787627 760 + 66173745 GGCAGGAGGACCTGG-ACTGTCCCAAGCAGAACCA--CAGGATCAGGCAGACCTTACTTCTGTT----------TCTAAGCAAAACAC-----AGATGCTGTGCCCAGAACACCACAGGGGAGAAGGGGTGAGCTGTA-ACCTCAAA-GACGTTCTCAATCTA----------------------AAAACAAACG-------------------AAAAACCATCCCAGGTTGCTTTTTA--CTTCTGGATGATGCTTCTGGAACCCTAGGATTCCTCTCTGTACCTGACTGTCCTGCTTTTCTGCGTGAGGCAAAAAGCATGTCATGGAATCTGGGGTTT----GTTAGGG-GCCTAGAAGAATCAGAGGCAGCGGAGGGAGGCGTGTG---GGCTCTGCGTTCCTGCATGCCTGGGGCGCCGTGCTGCCGGCTGCCTTCCCTGCAGGGTGAGAATAGACAGT-------------GTCCAAGACAAGTGGCTACTGTCCACTTACGAGCTTAATGCTTTTAATTTCTGGCCCTCCAGCCTGTCTGGATCATTGATCTGTCTTGGCCAGGGGGAATCGTGCTATACAATTTCAAGTAAGCTGC-T-----CGGCCTACA-GCTAAACACCGGATAAATGCCTTGTCTACCAGCAAGGCAGCTGCTTGGATGATTGAACTTTCCCCAGCCCCCATA-TTTAAAATGGCACATCCCTGCTCAGAAGACCTAATT-GGCTTTCT-CTGTCCTCCACTGTCAGATGGTCCAGGCTTCTGTGGCCTCCAACTCGTGGCTGGGCCCACCCACTACCCATCACCCAACTG-TATCCCTACAGGCAGGCCTCTTCCTTCACAG a score=26206.0 s hg17.chr17_random 1729920 245 + 2618010 TGCCGGCAGCGCCCCCTGTCGGTCCCGCTTGTCCCTTGCCCACATTTCTTCTCCCTGGGGAGCCTTTTCCTCTCTGGTCCAGACCCTACTGCCCTTTGGAGCCTCCTCGCAGAAACCTCTCGAAGAGTGGGATTCGAGCCCATCTCCGTCTCCCTTCAGCTCCCCATGCGAGTTCTGCATGTGCCTGTGAAGTGGGGACACATTGACCTGGCAGAGCTGTGTGC-CCGAGTGGAAGAGGGGTCCCT s panTro1.chr19 78880474 245 + 82489036 TGCCGGCAGCGCCCCCTGTCGGTCCCGCTTGTCCCTTGCCCACATTTCTTCTCCCTGGGGAGTCTTTTCCTCTCTGGTCCAGACCCTACTGCCCTTTGGAGCCTCCTCGCAGAAACCTCTCAAAGAGTGGGGTTGGAGCCCATCTCTGTCTCCCTTCAGCTCCCCACGCGAGTTCTGCATGTGCCTGTGAAGTGGGGACACATTTACCTGGCAGAGCTGTGTGC-CCGAGTGGAAGAGGGGTCCCT s mm5.chr11 118582374 160 + 121648857 GGCCAACGGTG---------AGTCCCTCCTG-------------GTTCTTCTGTCCTGAGAGCCCTTCCCG-TCTGGTCCAGTTCCCACTGCCCTTCTGATCCCTCTCTTAGAACCCTCCCAGAGA------------CCAAGGTCTGCTTCCC--------------------------------------------CATACTGCACTGCACAAGCTGTGAGCTTCAAGTGGAAGGG-------C a score=53018.0 s hg17.chr17_random 1730165 323 + 2618010 GCAAAGCATAGGGCCCGGTAAATCATTC----CTTGGGGACGTTCTGGAAGAGCTCTCTGAAGACAGCACCAAATCTTGTT-CCAAGTTCC--ACCAGTCCCAGCCCAGGACTCAGGACACGGTGGGCC-----TGCTCAGACGCCCGGGTGGTAAACTGAAATTGGCCTCTGTGGTT-GGGACTGGCCACAGGGCCTGCNGCGTGAGGACACCCCTTGGGAACANGGCCCCANGCCAGGCCGGCCTCATTACCAGCCCCAGAGAGTTTGCCCTTCGTGCT-CAGCTGTCGTAGAC-AGGGATCTGGCCGGAAGAGAGTAAGTGTCAGGGCCAGCAGG- s panTro1.chr19 78880719 320 + 82489036 GCAAAGCATAGGACCCGGTAAATCATTC----CTTGGGGACGTTCTAGAAGAGCTCTCTGAAGACAGCACCAAATCTTGTT-CCAAGTTCC--ACCAGTCCCAGCCCAGGACTCAGGACATGGTGGGCC-----TGCTCAGACGCCCAGGTGGTAAACTGAAATTGGCCTCTGTGGTT-GGGACTGGCCACAGGGCCTGCA-CGTGAGGACACCCCTTGGGAACA-GGCCCCA-GCCAGGCCGGCCTCATTACCAGCCCCAGAGAGTTTGCCCTTCACGCT-CAGCTGTCGTAGAC-AGGGATCTGGCCGGAAGAGAGTAAGTGTCAGGGCCAGCAGG- s mm5.chr11 118582534 285 + 121648857 TCAGGACTGAAACTCTAGTCACACACCCACCTCTGGAGGCCATTCCCAAAAAG--GTCTGCAGGTGGCACCAAGCCTTCTT-CCAGTCTCCAGACAGGTTCCAGCCAA------ACAGCACAGTCAGCC------ACTCAGAAAGCCTGGTACTAAAATGAAGCAGGCACCTGTAGCCAAGGGGCAGCCATGTGGCCTGTC-TAGTAGGTTATCCCTCGAGAACA-GAGCCCA----------------------------GGGCATATGTCCCGTGGACT-CAGAGGTCATCA---AAGGGTCTGCCCAGAAAAG----GATGGCAGGGCCTGTGAA- s canFam1.chr18 28788387 316 + 66173745 GCAAGTAATAGCTCCTTATAGGTCACTC----TTCTAGATCATTCCAGAAAATCTCTCTGAAGACAGCACCAAATCCTGTTCCCAAGCTCC--ATCAGACCCAGC---GGGCACTCAGCACCACAGACCCATGGTGCTC-----CTGTGTGGGTGGGCTGAAGTTGGCAGCTGTGGC--AGCTTGAGCCACAGGACCTGCACAATGGGATCCCCCCTTGGAGACA-GGCCCCA-GCAAGGCTGGCCTCACGGCGAGCCCTAGGGAATGTGCCCTTCCAGCTGCAGCTGCTGTCCACTAGGGATCTGGCCAGAAAAGGGCA-----CAGGACCAAACTGT a score=10492.0 s hg17.chr17_random 1730488 72 + 2618010 ------ACATACCAGCACTAACCGGGNAGATTTTCCATTTGGGGACGTCANTCTAAGAGAATTTTTAAAACCTCTGAT s panTro1.chr19 78881039 70 + 82489036 ------ACATACCAGCACTAACCGGG-AGATTTTCCATTTGGGGACGTCA-TCTAAGAGAATTTTTAAAACCTCTGAT s canFam1.chr18 28788703 76 + 66173745 ACGTCCTCATACCAGGAACACCCAGG-AGATTGTCCATCTTGGGATAGCA-TAAAAGAATATTTTATACACCTCTGAC a score=17798.0 s hg17.chr17_random 1730560 177 + 2618010 TTGGAAACTTTAAT----------------------TTTTAAAAANGTGAGCACAT--NGGGGAGGACTGNGGGAGTCCTTNGGTAATAATCATTAGGAGAGAAACACAGGGAGACTGGGCTTGGGGCCAACAGGACgactgaaggcacagagctaatttcgtgccctctgaaaaatcccactaaaanctacaaagagaaa s panTro1.chr19 78881109 172 + 82489036 TTGGAAACTTTAAT----------------------TTTTAAAAA-GTGAGCACAT---GGGGAGGACTG-GGGAGTCCTT-GGTAATAATCATTAGGAGAGAAACACAGGGAGACTGGGCTTGGGGCCAACAGGACgactgaaggcacagagctaatttcgtgccctctgaaaaatcccactaaaa-ctacaaagagaaa s mm5.chr11 118583074 148 + 121648857 ACAGAAACTTC-GT----------------------TTTTAAGAATATGAGGATGT---AGAAGCGCCAAGAACAACCCCC-TGCAGTAGCAACTAGGAAAGAAGCAAAGATA--------------CCACTCTAGCTATTACAAGGCCACAGCTCA-------CCCTCAGAAAGATACAGC--AAA---GCACAGAAAAG s canFam1.chr18 28788779 187 + 66173745 TTGGAAACTTTGTTGGTTTTCGTGTTTTCTTGTTTGTTTTA-----GTGAGAACAGGGAGGAGAAGCTGAGAATGGTACTT-TGCACTGATAATTAGGGACAAAACGAGGAGA--TTTACCTCAGAAACATTTTAG---TCAAGGGcacacaactaattttgttccctct--aaaaccccactaaaa-ctaccaaaagaga a score=2092.0 s hg17.chr17_random 1730737 12 + 2618010 attttaaaaagg s panTro1.chr19 78881281 12 + 82489036 attttaaaaagg s mm5.chr11 118583222 12 + 121648857 ACTCTAAGAGGA a score=26630.0 s hg17.chr17_random 1730749 302 + 2618010 ggctngggcatggtggctcaagcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtcanggagttcgagaccagcctggccaacatggtgaaacgccgtctctactaaaaatagcaaaactagnccaggtgtggttgtgggtgcctgtaatcccaattacttgggaggctgaggcaggagaatcacttgaatccgggaggtggaggttgcagagagccgagatcgcgccactgtactactccagcctggacaacaagagtgagacttccatctcaaataagaataa s panTro1.chr19 78881293 299 + 82489036 ggct-gggcgtggtagctcaagcctgtaatcccagcactttgggaggctgaggtgggtggatcacctgaggtca-ggagttcgagaccagcctggccaacatggtgaaacgccgtctctactaaaaatagcaaaactag-ccaggtgtggttgtgggtgcctgtaatcccaattacttgggaggctgaggcaggagaatcactcgaatccgggaggtggaggttgcagtgagctgagatcgcgccactgtactactccagcctggacaacaagagtgagacttccatctcaaataagaataa a score=12941.0 s hg17.chr17_random 1731051 104 + 2618010 ctttaaaaaggcataaaccccaacgacctnggagaataggagaaaagagaacagtagccggctgtgggcagcggggaggcacaggagaagtggCGGCCCGCCCT s panTro1.chr19 78881592 103 + 82489036 ctttaaaaaggcataaaccccaacgacct-ggagaataggagaaaagagaacagtagccggctgtgggcagcggagaggcacaggagaagtggCGGCCCGCCCT s canFam1.chr18 28788966 80 + 66173745 ttttataaagatataaacaccaaagagct-ggagaacgggaggaaagacaa----------------------GAAAAATGATAGAGCAGTGGTGTCTGGCCT- a score=1844.0 s hg17.chr17_random 1731155 201 + 2618010 CACGGAGCTGAGTCTCNGGCCCAGAGGCAGGNGAAGGCTGACAANTGGAATCCCCCGAAGGCTCAGAAGGCGTGGGGCCCAAGACCCG----------------------------------------GGGAAGCCTGGAGATCCTCG----------------------------GATAGCCCCTctggaggtt-tattccctgaggacactgaagcagnc-ctctgtggcctgggggnccgccagacactngcggacagaggggcgtcc s canFam1.chr18 28789046 263 + 66173745 GGCCATGCTGACTCCTAACCCCACAG-CAGAGGGAAGCTGAGAA----ACCACCTCCAAGGCTCCGACCA-GTAAGGCCAGGGACCCGTGGAGATAGGGAAGGCAGCTCAGAGCAGCAGGATCTTTTTGAGAAGCCCACAGACCCTTGCTGGCTACCTGCTCCAGACCCCCAGATGGCCAGCCACCCTGGAGGGGGTGTTCCCTGGGGAGAATGAAGCAGGGGCTCTGTGGC-TGGAGGGACTTCATGCACGGGTGG-CAGAGAGGTATGT a score=13718.0 s hg17.chr17_random 1731356 541 + 2618010 --tgcacggagagccccccttttccctcacggcacctgtcag-catcctgacctccaccctcctgg-caggaggccggaagaatctcctct-------gggg--------aatctcaccagcacccagaggggaaacctgaagatagagctttgctgcttcc-------aagncacaggccccactccc------tgctcggagctgccaaccagctttgcag----ccccccctaaggtgagtaa---aaagccnanagngatgnaccagacacctgcggaaagccttcatgagaaggagccgccaaaacnac---------gcaacag------------------agcggggccg---------acttcgaggaaacagatattaggcagggaggagaaaacatcagaaatagcagtatttaatatcctcccagagatcagaggagataccgcatccatgaacncaagagcagggtgctattttaaggagaacatttagagaacaaaaaa--gctgggaagttaaaagcatgagagcagaaacaaaacatctcaacagacaggctggaagagaaaagtaangggaatgccccagaaggcaaagcaaaaaggcaaa s mm5.chr11 118583972 533 + 121648857 --TGCCTGGGAAGCCAAGAGTCCCACTAGTGCCACAGCCCAGTTATCCTG------ACCCTCTAGATCAGGAGCCTGG-----CCTGCTCT-------CAGG--------ACTCTGACCAGC-CGTAGGGAGAAACCCTACACCTA---CCTTTAGGATTCCCTGCCAGAAGTAGCAGGACAGAAGCCC------CACTTAGCACTGAAGGTCAGCTCTGCAGGC--CTCCCCCTAACGCTGGTAGCCTAAACTCAGCAGAGCTG---TAAACAC--------AGGCTCTGAAAGAGGGAGCCACT-AAACAACCTTCCCTGGGGGAGGG------------------ACCGAGGGTG---------GCCTGGAGGAGACAGGCATTGGGCAGGGAGGAGAAAATATCAGAAATAGACATATTTAATATCCTCAAAGAGATCAGAGGAGATATTGCAACCA-GAAC-CAGGAGCAGGATGCTATTTTA---AGAACATTTAGAGAACAAAAAAGGGCCGGGGAATTAAAAGCATGCAAGCCGAAACAAAAAAACTCAGCAGACTGGTTGGAAGATAAAAGTAA-GGGAATGTTCCAGAAGGCAAAGCAAAAAGACAAA s canFam1.chr18 28789309 469 + 66173745 TGTCCCCCAAAGGCTGAGAGCCCCCATCAGCCCCCAG---AG-GACCATG-------CCCTTCAGG-CAAAGCCCAGGAGAGTCCCTCTCTCCTCCTGCAGGTAAGACATAACCTGGCTATTTCCCAGAAG---AGTGTGGACCAa-----------tctccctccaggaaagccccgtgggcaagcccacccagtcctcagagcctccagtcagctctgcaggccactccccaaaatgtgagtgg---acatccc-caaatttc---cagacatctgaggaaagcctttcaga-agagagccacc-aaactac----ccagggcggtggtggctgggggggtgggggggtgggggggtggagaggaactttgaggaaacgaa-----------gacgagagggtatcatcaacagtccctttcaatgtctcaaaaggcagcagagaagatactgcatctacgcat-caagaacaggacgctctttgaaagaaaacactgagagaaccaaaac-------------------------------------------------------------------------------------aggcaaa------------- a score=-47.0 s hg17.chr17_random 1731897 93 + 2618010 gaggagaaaaagaagaaagaggggatgaaaaaaaactagatgatcaattcacgaggctcaacacaaaaggaattctaaccccgacccccatag s mm5.chr11 118584505 52 + 121648857 GAGGGGGAGAATAGAAAAGGAGG-------AGAAATGAGATGGCACACTCATGAGAGCC---------------------------------- a score=282.0 s hg17.chr17_random 1731987 3 + 2618010 tag s panTro1.chr19 78883249 3 + 82489036 TAG a score=6168.0 s hg17.chr17_random 1731990 59 + 2618010 ggcccccagagagaaggaggaggaggagaagaa---aggaaatcatcaattacttaagaatt s panTro1.chr19 78883252 62 + 82489036 GGCCCccagagagaaggaggaggaggagaagaagaaaggaaatcatcaatgacttaagaaat s mm5.chr11 118584557 47 + 121648857 GGCGCCTGCGGAAAGGGAGG-------GAAGAG---GGGGCATCGCTAATCATTTAA----- a score=27224.0 s hg17.chr17_random 1732049 170 + 2618010 tttttccagaaataagtttcca-aattgtccacaaaatcgat-ggaaatgattcatatcaaggncacattatcttgaaaagtaaantcactgaaga---aaaaaaaaaaatgtttccccaagtttccaggtgccataaaaaagagcaggaacgagaat-agctccagaatt-ctcaa------ s panTro1.chr19 78883314 168 + 82489036 attttccagaaataagtttccacaattgtccacaaaatcaat-ggaaaggattcatatcaagg-cacattatcttgaaaagtaaa-tcactgaaga---aaaaaaaag--tgtttccccaagtttccaggtgccataaaaaagagcaggaatgagaat-agctccagaatttctcaa------ s mm5.chr11 118584604 149 + 121648857 ---CTCAAGA-------------AATTCTCCACACAATGGATAAGAATTGACCCACATCAGAG-CATATTCTCACAAATACAAAA--CACTAAAGAGGGAAAGAAAAA--TAAATCTTCAG--TTTAAGGTTCTGTGAAAAA---CAAGAATGAGTGT-GGCTCCAAGAGT-CTCAA------ s canFam1.chr18 28789778 167 + 66173745 ttgccctagaaatgagtttcct-ggttctcagcacaatggatggaaactgacccacatcaaag-tatactgac----ataccaaa--cactgaggc---caaaaaaag----ttcccacaagtttccaggtcccataaaaaagagcccaaatgagaatgggcattagccat-ctctagaacaa a score=106484.0 s hg17.chr17_random 1732219 721 + 2618010 cacaaagagggcagctaaccaatcacaaagcgtgccttcaaaa-gctgatggcaagtgatttctggcctggaatcccttacttcacaaaattaacaatcaaacgtgagat-----------taaaacaaagacatttgcacatgcgagatctcgacaaaa-ttatttcccacacaccatctctc----agctaccagaggacgtgctctaacaaaacaagggtgtaaagcatgaaagagggcaatgagggatggaagaaacagaggatctagtaagcgggcaggga---------tccacatagtgggagaggagggagggcaggagggcagctgtgtaccgggcaagaggttgccagtccagatgagagcaggGTGGTGGCATGTCCAGCTGCCTAGGGCTCAGACATGTAGAGGGCTGTCACTACCAAGATGCCTCCTGCCATTGTACCNACCCTTTCAGTGCCAGGTGAGCCTGGCCCCTGCTCCCCTCTGTG----CCCGGCCGGCTCGGGCCATGTTGCAGTGGAGTGCCTGTTTTCCTTTCCACGCACTGCCACC----TGTGTAAGCTGAAGACCCTCATTTCGCCCCATGGA-AGCATTTACTTTGATCCACTCTTAGCATCAGGAGGTGGCCACAGGGAACAAAGAAACAGAAAACACACATCAGCCCACCAACCTGCAAGAAGCCCC------AGCCAAGGAGGCCCTTGG---TTCCCCAGGACCCCTC--------ATGCCTT--------------------GCCCAAGAACTCCCTAAA s panTro1.chr19 78883482 720 + 82489036 cacaaagagggcagctaaccaatcacaaagcgtgccttcaaaa-gctgatggcaagtgatttctggcctggaatccctcacttcacaaaattaacaatcaaatgtgagat-----------taaaacaaagacatttgcacatgcgagatctcgacaaaa-ttatttcccacacaccatctctc----agctaccagaggacgtgctccaacaaaacaagggtgtaaagcatgaaagagggcaatgagggatggaagaaacagaggatctagtaagtgggcaggga---------tccacatagtgggagaggagggatggcaggagggcagctgtgtaccgggcaagaggttgccagtccagatgagagcaggGTGGTGGCATGTCCAGCTGCCTAGGGCTCAGACATGTAGAGGGCTGTCATTACCAAGATGCCTCCTGCCATTGTACC-ACCCTTTCAGTGCCAGGTGAGCCTGGCCCCTGCTCCCCTCTGTG----CCCGGCCGGCTCGGGCCATGTTGCAGTGGAGTGCCTGTTTTCCTTTCCACGCACTGCCACC----TGTGTAAGCTGAAGACCCTCATTTCGCCCCACAGA-AGCATTTACTTTGATCTACTCTTAGCAACAGGAGGTGGCCACAGGGAACAAAGAAACAGAAAACACACATCAGCCCACCAACCTGCAAGAAGCCCC------AGCCGAGGAGGCCCTTGG---TTCCCCAGGACCCCTC--------ATGCCTT--------------------GCCCACGAACTCCCTAAA s canFam1.chr18 28789945 719 + 66173745 --cagtgag---agccaggagataagggtg-gtgccttcaaagtgccaaaggaaaatctttcctggcctagaatccctaacttagccaaattaacaatcagctgtgagattaaaattaaaataaaataaaaacctttgcacatgcaaggtttcaaaaacctttatttcctatgcactgcttctcaggaagccactagaggatgtgctccaacaaaacaagggagtaaatcgtgaaaacatatgacaagggatgcatgaaatagtgcatccagtaagaggggggagaagaggggagtccacaggatgggagagaaggCAG------------ACCGTGT--------AGGGGAAGCCA---TCAATTAGAGCAGGGTGGTGACACATCCAACTGTCTAGTACACAGACATGTTGAGGGC-GTCATCACCAAAACACCT-CTGGCAGCCTAGT-GACAGATTAACGCCAGACAAACCTGGCCCAGGTTGTAATCTGTACCTTCCTGGCCTGCGTGGGCCAAGTCCTGATGGAGTGCCTCCTTTCTTCTCCATGCACTGCCACCTGTATGTATAAGCTGAAGACACTCATTTCCCCCCTCAGACAACAC--------ATGTCCTCTTAGGAACAGGAGG----------------------------------GCGGCCCAGCCACCTGCCAGACATCCCTCTGTTAACACAGGAAGCTCTTGTGGCCTCGCCAAGAGCCTCCCAGACCAGATGCCATGGTCCACTGAGGGTCAGTGGGTTCACTGACCCCCTAAA a score=129.0 s hg17.chr17_random 1732940 4 + 2618010 AGAG s canFam1.chr18 28790664 4 + 66173745 AAGG a score=2786.0 s hg17.chr17_random 1732944 28 + 2618010 GCTCTTGTNAAAGCGTGGGGCAGCTGCG s panTro1.chr19 78885080 27 + 82489036 GCTCTTGT-AAAGCGTGGGGCAGCTGCG s canFam1.chr18 28790668 22 + 66173745 GCTCTTAT--AAGCTCAG----ACTGTG a score=17075.0 s hg17.chr17_random 1732972 100 + 2618010 GTTCCAGAGTT-------TCACATTC--TCTTCTCCCAGGCTCCTCCGTCTAAGGGTAGCAGACCCAAA--TCATCACAGACAGAAAGGACATCATGGCCCCACTTTCATA s panTro1.chr19 78885107 100 + 82489036 GTTCCAGAGTT-------TCACATTC--TTTTCTCCCAGGCTCCTCCGTCTAAGGGTAGCAGACCCAAA--TCATCACAGACAGAAAGGACATCATGGCCCCACTTTCATA s mm5.chr11 118585199 85 + 121648857 GCCCCAGATCT-------TTCCTTCCTGTCTTCTACCAGGCTTCTCCATCAATGAGTAGCAGCTC-------------------AAAGGGGTGCGTGGCTCCATTTTTACA s canFam1.chr18 28790690 103 + 66173745 GCCCCAAAACTATTTAACTTGTCTTC--CCTTCTCCTAGAC-CCTCCATCCGAGATGAGCAGCCTGAAAAGCCACAGCA-----GAAAGGCACCGTGGCTAGGTCTTTATG a score=8434.0 s hg17.chr17_random 1733072 110 + 2618010 TTCAGCACTGGACACATCCACAGATAGAAAGGAGGNTGAAGATGCAACTGTAGAAGGATCGAGGAAAGCAAGAGATCAGGGGCCTGCTTTTTCCTTGCTNGGTCTTTGAC--- s panTro1.chr19 78885207 108 + 82489036 TTCAGCACTGGACACATCCACAGATAGAAAGGAGG-TGAAGATGCAACTGTAGAAGGATCGAGGAAAGCAAGAGATCAGGGGCCTGCTTTTTCCTTGCT-GGTCTTTGAC--- s canFam1.chr18 28790793 89 + 66173745 GTGAGCATCTTGCAC------------TAAGGAGG-TGCTCACACAACAGCGAAATGTGGGAGAAAAGACAGA----AGAGG---ACTTTCTGCGTGCC----CTTTCTCCAT a score=29430.0 s hg17.chr17_random 1733182 156 + 2618010 GTTCTTGTGAGGTCCACAGATGGCCAGCACCGACGGCCCGTTGGAGAGCTGATGTCAC--------CGCCATTGGCTGCCTTGCTTGCTCTCTCAGTCCAACAGAGTAAATTATAAGGTTACTCTATGTAGTCGTAACCNTCCNTTGTTAAGAATGGATCTCTC s panTro1.chr19 78885315 154 + 82489036 GTTCTTGTGAGGTCCACAGATGGCCAGCACCGACGGCCCGTTGGAGAGCTGATGTCAC--------CGCCATTGGCTGCCTTGCTTGCTCTCTCAGTCCAACAGAGAAAATTATAAGGTTACTCTATGTAGTCGTAACCT--CCTTGTTAAAAATGGATCTCTC s mm5.chr11 118585868 151 + 121648857 GCCTTTATTAGGCTCATAGGTGTTCTGCACTCCAGGCT-------GAGCTTATGCTACAGCATGG-CGCC--CAACAGCCTCGGCTGCCTTGTCA-TCCAGCAGAGAGCAGTCCAAAGTTGCTTGACACAGTTATAAACT--CAGAGAGGCGAATGGACCCCTA s canFam1.chr18 28790882 154 + 66173745 GATCCTGTTAGGTCCACAGATGACCAGCA--GGTGTACCGGTGGGAAGTGCATTTTAC---ATGGTTACC--GGGCCTCCTTGTTTGGTCTCTCAATCCAATAGAGTAAATTCTAAGGCTACTTAATGCAGTCCTAACTT--CCTTGTTAA-AATGACTCTTCC a score=300.0 s hg17.chr17_random 1733338 1 + 2618010 g s panTro1.chr19 78885469 1 + 82489036 g s mm5.chr11 118586019 1 + 121648857 G a score=27478.0 s hg17.chr17_random 1733339 307 + 2618010 gccgggcacggtggctcacacctgtattcctagcactttgggaggccgaggcaggtggaccacctgaggtcaggagctcaagaccagcctggccaacatgg-cgaaaccccctctctactaaaaatacaaaaattagccgggcgaagtggagggcacctataatcccagctactcaggaggctgaggcaggagagtcactngaacccgggaggtggagattgcagtgagccaagatcacaccactgcactccggcttgggcgacagagcaagactccatctcaagaaaaaaaaaaaaaa---gaaTGGATC s panTro1.chr19 78885470 311 + 82489036 gccgggcacggtggctcatgcctgtattcctagcactttgggaggccgaggcaggtggaccacctgaggtcaggagctcaagaccagcctggccaacatgggcgaaaccccctctctactaaaaatacaaaaattagccgggcgaaggggagggcacctataatcccagctactcaggaggctgaggcaggagagtcacttgaacccgggaggtggagattgcagtgagccaagatcacactactgcactccagcttgggtgacagagcaagactccatctcaagaaaaaaaaaaaaaaaaagaaTGGATC a score=3204.0 s hg17.chr17_random 1733646 30 + 2618010 TCTCTGTCTCTCTCTATacaaaca------cacaca s panTro1.chr19 78885781 30 + 82489036 TCTCTGTCTCTCTCTATacaaaca------cacaca s canFam1.chr18 28791036 34 + 66173745 TCCCTCCTCCTCCCCACACCAATATTACATCACA-- a score=15961.0 s hg17.chr17_random 1733676 200 + 2618010 cacacacacacacacacacacacGTGTTACTACTTCCCNCACTACTGCCAGGCCTGCT-ACCGCTGTTGTATGTGTCGGATCTCCCCTTCAGGCCACCA-TCCAAGCACGCTGTGGGACCCTGTGCAG------TCCTGCATCAATAAATACCACTTAGGG-AGAGCCCCACACGACCTGAGGGNATGTATGATCAAAACGCCCCACTA s panTro1.chr19 78885811 191 + 82489036 cacacacacacacac----------GTTACTACTTCCC-CACTACTGCCAGGCCTGCT-ACCACTGTTGTATGTGTCGGATCTCCCCTTCGGGCCACCAATCCAAGCACGCTGTGGGACCCTGTGCAG------TCCTGCATCAATAAATACCACTTAGGGGAGAGCCCCACACGACCTGAGGGAACGTATGATCAAACCCCCCTACTA s mm5.chr11 118586021 154 + 121648857 CAGGCAAACCCACATGCATCTGAGTCTCCCTACTCCCA--------TCCGGGCCCTCTAACAGTTCCTTTGTCTTCAGGGTCTCCTCTTTGGGCTGTCA--TTAATGGGGTTGGGGGTGCAGGTGC---------------------------------------------CATGACCTGAAGGAATGTAATAATAAAGCGACCCACGA s canFam1.chr18 28791070 176 + 66173745 --TGTTAACACACAGGCATGTCCATGTC-CTACCCCTG--------CCCTGTCCTGTTGGCCACTGCTGGCTACCGCGAGTTTCCCTTTCAGGCCGCGG-TCTGAGCGCACCATAGGTCACTGGACAGGTGCCTGCCAGTGTTCATGACTTCCCTGTAAGG-ACAGCCCCACAGG--------------------GAAACCACCCACTG a score=0.0 s hg17.chr17_random 1733876 7 + 2618010 CTGTTTC a score=216.0 s hg17.chr17_random 1733876 7 + 2618010 CTG-TTTC s panTro1.chr19 78886002 8 + 82489036 CTGGTTTC s mm5.chr11 118586175 7 + 121648857 ATG-CTCC a score=47004.0 s hg17.chr17_random 1733883 369 + 2618010 ACGAAACACGCGGGG-CAGATGTGCAAACATTTATACTGTGT-GGGCTCTCAGGGGTTGTGCACCTGTCCGGGCTCCATGGAATGTAGGTCACAAGGAGACCTTGGAGGTCAGAGACGCCAACCAGCTAACTTAAATGAAGACGTCACAGGG--CCGGGCTGTGCTCTGTCC-----------CATAGCTGGAAGAGAGGTGTTCGGCCCTCACACACCCAGCCTCAGCCTCAGCTGTGTCCGCCGGCT-GGCTCTCCGCTCTTCACTTCAGTCCCAAGGTTTATCATCCCTCTTTCTCCTGACCCTTTTTTCCTGGCAGATGGTGGCAC-----AGTTTCACCTTGAAGCTAGAGCCTTCAG-TGGGAGCAGCTTTCTCCCTGCACGCCT s panTro1.chr19 78886010 371 + 82489036 ACGAAACACGCGGGGGCAGATGTGCAAACATTTATACTCTGT-GGGCTCTCAGGGGTTGTGCACCTGTCCGGGCTCCATGGAATGTAGGTCACAAGGAGACCTTGGAGGTCAGAGACGCCAACCAGCTAACTTAAATGATGACGTCACGGGG--CCGGGCTGTGCTCTGTCC-----------CATAGCTGGAAGAGAGGTGTTCGGCCCTCACACACCCAGCCTCAGCCTCAGCTGTGTCCGCCGGCT-GGCTCTCCGCTCTTCACTTCAGTCCCAAGGTTTATCATCCCTCTTTCTCCTGACCCTTTTTTCCTGGCAGATGGTGGCAC-----AGTTTCACCTCGAAGCTAGAGCCTTCAGATGGGAGCAGCTTTCTCCCTGCACGCCT s canFam1.chr18 28791246 352 + 66173745 ACGGTGCGTGCGGAG-CAGATGTGCGGAAGCATATACTCTGTAGGGCTCCAGGGGCTTGTGTCTCT---CAGACCCCATGAAACCCAGATCACGATGAAACC-TGGCAGTCAGAGGCTCCAACCCACTGACTTACCCAGTGAAGCCACGGAGGCCCGCGCCA-GCCCAGCCCTCACCTCCGGTCACAGCTGGCGCAGAGACCCTCCTCCCT-----GCACTGCCTCAGCACCAGCTG-GCCAGCTGGGTGGGCTGCCCG------ACTACACACCCGAG----------CCACCATGTGACCCCCCCTTACTCCTGGCAGATGACTACACCATGGGTTTCCACTAGGAAGGGAGAGC--TCAG---------ACTTCCTCCCCATCCCCCT a score=0.0 s hg17.chr17_random 1734252 27 + 2618010 CCTTCTAGTTTCATCTTGTCTTCCTGC a score=2565.0 s hg17.chr17_random 1734252 27 + 2618010 CCTTCTAGTTTCATCTTGTCTTCCTGC s panTro1.chr19 78886381 27 + 82489036 CCTTCTAGTTTCATCTTGTCTTCCTGC a score=4112.0 s hg17.chr17_random 1734279 11 + 2618010 TCCCTTTCAAA s panTro1.chr19 78886408 11 + 82489036 TCCCTTTCAAA s mm5.chr11 118586810 11 + 121648857 TCCTCTCCAAG s canFam1.chr18 28791598 11 + 66173745 TTCCCTCCAAA a score=355.0 s hg17.chr17_random 1734290 221 + 2618010 TTCTTCTTCCGTTTTCTCCCTCCATCCAGCCCTCTCTTGCTCTATCCTCTTCTGTCTTTCCTGCTCTGGGGATGGGGGGGTCTTAGCCTACCAGCCTAAAAACCTTATCTGGTCTTCCCCATCCTTCCAGAAGCACCCCTAGATGCTCTTCTCTCCCCTCGTTCCCCTTCC---ATCCTCGCCTTCCCTCGATCACAAGCATCCCTACCTCCACGTCCACACCC s mm5.chr11 118586821 171 + 121648857 CCCTCCCCTCCCCTCCTCTCTCC------TCTCCTCTTTCTCTCTCCTCTCCTCTCCTCACCTCTCT-----------------------------------------CTCCCCTTCCCTCCCCTCCC-----CTCCCCTCCCCCCTCTCCTCTCCCCACTCTCTCTCTCCTCTCTCCTCTCCTCTCCTCTCTC-CTCCCCCCTCTCTCTCCCCCTCCCCTCCC s canFam1.chr18 28791609 180 + 66173745 -TGCCCTCCTGCTTCCTCTGTCC----AGCCATGTCGGGCCTCCCCGACTCCAATCCCTCCTGCCCT--------GGGGGCCCTGGCCCA-CAGTCTGAAAGCGGGTGGGGGTCTCACCCTTGCTGTGAGAGCCGCTTGTAGACACTGCTCTCTCCCCAAGGACCCTTATC-------------------GCTGACA-----------CTTCCCATCTGCCCCC a score=3768.0 s hg17.chr17_random 1734511 121 + 2618010 ACGGACACCCCAGGGAAATGGCTCTCTCGGGTCACCAGGGAAGGCTGAATCACAAACAGCCAGGCCTGCACTCCCTCCTTGGTTTACTTGATCCTTTACTGCAGGTGGCCCCGTGGCCAAG s canFam1.chr18 28791789 112 + 66173745 A---ACACCCCACAGAATGGCCCTCCTGGGGTCTCCAGGGATGG---AGTCAC---CAAACTAGCCTGCACTCCACCCTCGGTGCACTTGATCATTTAAGGTAGGTGGCCCTGCTATCCAC a score=19888.0 s hg17.chr17_random 1734632 540 + 2618010 TCCCTTTCTAGAAACCTCGACTTCATCCTCCACCACAGCACCGTCTCCCACTCTTCTCTCCCGAGGTTGCACGTCAG-CATCTCCACCTGTCTTTCTCTGCTTCTCCCTAAACACCAGCGTCCCATT---------------------------TTCCCAGGTGATCCTATTTTTCTCCCCAATGAGCTCATCCCTCCAGTGGTCTCACTGTCGTGGAAGTCATCCCCGCATTTTgagctgaaagca---acttcagaggtcatgttgcacagtccgcccatat--cacagatgagaacactgaggcccagaATGTCCCGTGGNCTCGCCAGCAGCTCTGGGTCCTGGCCTGGGAT-----GCTGCCTACTGCGCCAGCCCCACTGCCCCGCCGCCTCTTGTGTCACATGCAGGGAGC--AGCAAGCGCATCTGCGATGT--CACATGTGCACCTCCAGGCTTGATATTTTATTTAAGAGTGTGCGACTCCATATCAGTGCCCAGTGGCTTTCAGTTCTGACATTTATCTTNCTCCAGAGGAGGATGAACCACTTGCACGCCGTCCGTCTCTCCTCCCACGT s mm5.chr11 118587055 464 + 121648857 TCCCCTCC------CCTCCCCTCCCCTCCCCTCCCCTCCCCTCCTCTCCTCTCCTCTCCCTCAGGGCTCTGGATTGGGCTTCTCCA----------TCTGCTTGTCCTTGCACACCAGCTTCCCAATCCGAGCAGAGCAGAGTGCGGGGAAGGCTTGCCAGCTCAGC-TGCCCCCCCCCCAACTGATGTCATCCACTCCCCACAGTCCCTGGGACAGAAGTCACCA---------GGGCTGAATGCATCCACCCCAGAG-----------CAGCCCCTTTGTGTGCCACAG----------------TCAGGGTGTCCTGCAG------CTACAGACATGGACTCTG-CCTCAGAT-----GCTGTCAA-------------------------------GGGTCACTCCAAAGAAGG--GGAGGAAGT-----TGGTAT--CACAAACAAACCT----GTCTGACATCTTATTCAAGAG-------CTCCCCAGATGGACCTAGCTGCTTTTAGACCTAATACCCAACTT-CTCCAAAAGAGGGTGAACCACTGGCAAACTGTCC-TGTCTCCCCTAAGAT s canFam1.chr18 28791901 524 + 66173745 TCCCTTTCTGGAAACTTCTTCCTGATTCTGCATGACAGCCTGGTCTTCCACTCGTCCTTCCT----------------CCTTCCCATTTGCTTCCCTC-ACTTCCTCCCAAATGCCAGCTTTCCCTG------AGACTCAA-------------TCTCCAGTTTACATTATTTTCCTCC---ACCATCTTACTCCTTCGTTGGCTTC-CTGTCCCAGACGTCatcatggcatttccgaatggaagc----ggctcagaggtcattctgaacagtcccctcctat--tacagctgaggaaactgaggctcagagtg-cctgaa-------cagcagccctagaccCTGACCCCAGGTCTGAGTCTGCAAGCAGGACCACCCCC---GCCATGCCGCCTCCTACTTCACATGCAGGGGAGCAGACAGGTGCATCTGCAATGTCACACACACACACTTCCAGACTTGATATTTTATTTAAGAGTGTGCAGCTCTATATCAGTACCCGCTTGCTTTCAGTTCTGACATTTATCTT-CTCGAGAGGAGGGTGAACCCCTTGCAAATCATCCATATCTCCTCCCACGT a score=137906.0 s hg17.chr17_random 1735172 536 + 2618010 GGATGGGAAATGTCAGNAGGGAAGTCCAGGTAGTTCAGGGTCCCACGTCCACACCACAANGGATTTACTNGTTTTTGTGCTGCTTGAT------GACACAGCTGTGTTTGGGGAGCGGNCGATAGCCTAAAAAACACACAAGTGGAAATAGCAAAGGTTTTCTGAGGCACCGT-CAATTTCTGCAGCCG--GGGCAGTGGCCAGT-------GTCTCCGGGAACANGGCGCCGCAGNTCCACTCAGGGGCCCACAGGTTCTTCCCCNGTCTTC--C---ATCTCCTTGTCTTGAGTGGGACGTGAGCCGTATCTCTGAGCTCAGCCTGTGATTGCACAATAATA-CCACCCAGAAAACAAATTAAAAATAGGAAAAATCCATCCAAGCCGTNGTGTCTGCTCAGGCAGAATAGTGTCAGATTGCTAGGCAACTCCAGGCAGTCCTGGGGGAAGGAGGGCCGTGCTCAGCTTGTTCTGCAGAAGTAGAGTCCTTGTCCCTTTTGTGTGGATGTGCTCAGCCGAATCTCAGNCAAAAGTCATGAACAGAAAGGAGAGGCG s panTro1.chr19 78887667 527 + 82489036 GGATGGGAAATGTCAG-AGGGAAGTCCAGGTAGTTCGGGGTCCCACGTCCACACCACAA-GGATTTACTC-TTTTTGTGCTGCTTGAT------GACACAGCTGTGTTTGGGGAGCGG-CGATAGCCTAAAAGACGCACGAGTGGAAATAGCAAAGGTTTTCTGAGGCACCGT-CAATTTCTGCAGCCG--GGGCAGTGGCCAGT-------GTCTCCGGGAACA-GGCGCCGCAG-TCCACTCAGGGGCCCACAGGTTCTTCCCC-GTCTTC--C---ATCTCCTTGTCTTGAGTGGGACGTGAGCCGTATCTCTGAGCTCAGCCTGTGATTGCACAATAATA-CCACCCAGAAAACAAATTAAAAATAGGAAAAATCCATCCAAGCCGT-GTGTCTGCTCAGGCAGAATAGTGTCAGATTGCTAGGCAACTCCAGGCAGTCCTGGGGGAAGGAGGGCCGTGCTCAGCTTGTTCTGCAGAAGTAGAGTCCTTGTCCCTTTTGTGTGGATGTGCTCAGCCGAATCTCAG-CAAAAGTCATGAACAGAAAGGAGAGGCG s mm5.chr11 118587519 496 + 121648857 GGATGGAAGAAGTCAGAAGGGAA---CAGGCAGCTCGAGGCTCCGGG------CCATGG--------------CTGGTATGGTTCAAT-------------CTCTG-TAGGGGAGCAG-CTGTGGCCT--------------TGAAAGGAAGGAGGGTTTTCTAAGGTTCCAT-TCAACTTTGAAAACTACAGGATATGGCCAGCTCCAAGAGCCTCCTGGGACA-GAGGACAGGA-TCCCCACAGGGGCTC-CGCACTGCTCTGCAGTCTCTGAC---GGCCACTTGCCTCAAGCGGGACACACACCATATCTTCCAGCTCAGCCCATGATTATACAATAATACCCACCCAGAAAACAAATTAAAAATAGGAAAAATCCATCGGAGCCGT-GGGTCTGCTGCGGCGGGGTGGTGTCGGATTGCTAGGCAACCCCAGGCAATCCTGCAGGAAGGAGGTCTGTG-TGAGCCGCTTGCACAGAAGAAGGGCTCTTGTCCCTTTTGTGTGGATGTACTCAGCCAGATCTGAA-CAGAGGTCCTGAACAGGGAGGAGGTGCC s canFam1.chr18 28792425 514 + 66173745 GGACGGGAAATGTCAG-GGGGAGATCCAGGCAGCTCAGGGTCCCGTGTCCACATCGCAC--ACTCTTCTC-TCTTCGCTTTGCTTAATATTAATAACCCGGCTGCTTCTGGAGAACCG-GGATGGCATGGGGAATGTGACAGGGGTGCAGGCAGAGGGTCCCC-AGGTGCCACACAACTTTCACAAACA--GGGCGACGGCCAGA----------------GACA-GATGCTGAGG-CCCCTTCGAGGACCTGTGGGCTCCTCCCC-ATCTTC--CTGGACCTACTTGTTTCGAGTGGGACCCATGCCATATCTTTGAGCTCAGCCTACGACTGCACAATAATACCCACCCAGAAAACAAATTAAAAATAGGAAAAATCCATCCAAGTCGT-GTGTCTGCTGAGGCAGAGTGCTGTCAGATTGCTAGGCAACCCCAGGCAATCCTGTGGGAAGAAGGTCTGTGCTAAGCTTGTTCTACAGAAGTAGCACTCTTGTCCCTTTTGTGTGGATGTGCTCAGCCGAATCTGAG-CAGA---CGTGAGTGGAG---------- a score=0.0 s hg17.chr17_random 1735708 17 + 2618010 GGCTGCATAAGCCGNGC a score=1364.0 s hg17.chr17_random 1735708 14 + 2618010 GGCTGCATAAGCCG s panTro1.chr19 78888194 14 + 82489036 GGCTGCAGAAGCCG s mm5.chr11 118588015 14 + 121648857 GGCTCTGGCGGATG a score=0.0 s hg17.chr17_random 1735722 1 + 2618010 N a score=600.0 s hg17.chr17_random 1735723 2 + 2618010 GC s panTro1.chr19 78889016 2 + 82489036 GC s mm5.chr11 118588029 2 + 121648857 GC a score=114505.0 s hg17.chr17_random 1735725 559 + 2618010 GGAGTGCACATCCGTC--TGGACAAATGGATTTTCCGGAGGATGGAGNAAGAGACGGGGGTGTCCACGTGATGAGAAACATNCTGGATACGCGCTGGAAAAATCAATCTGATTTCTCTGTGCTTCCCAAGATCCAGGTGTTTACAATTGTGTAGGNCA----AAGCGTCTGAATGTNTAATGAAGTCTTTCCTCTCAATATNCCTGCATCTCCCTCAGCAAGAGGCAAATGAAAACTAGGCTCAGCAGGCCTGGGAGAGACGGGGAGCAGGAGGAGGNAACTAGAGAGACCCAGGCAGAGGAAGCCGGGAAATGGAACTGGGAGATCACACTCGCCCA-GTCGGGGTTTCTGCTCCCAGGAAGGAGATGGAGGCAACAGGGCAAGAAAGACACGTGCATTTTTCACAGTTCAGTCGAAACCATAATCATATTAATATGTTTGTGGATGCTAAGACGTTGGCTATAAGCATCAAATACTTT-----TCAAAGGAAGAGGCAGGGGACGTGGCATCGTGAAAAATAGCACCAATTTTCCATTTGATTGTAAGCTCTTTAGCACTCCAGGAGGG s panTro1.chr19 78889018 552 + 82489036 GGAGTGCACATCCGTC--TGGACAAATGGATTTTCCGGAGGATGGAG-AAGAGACGGGGGTGTCCACGTGATGAGAAACAT-CTGGATGCGCGCTGGAAAAATCAATCTGATTTCTCTGTGCTTCCCAAGATCCAGGTGTTTACAATTGTGTAGG-CA----AAGCGTCTGAATGT-TAATGAAGTCTTTCCTCTCAATAT-CCTGCATCTCCCTCAGCAAGAGGCAAATGAAAACTAGGCTCAGCAGGCCTGGGAGAGACGGGGAGCAGGAGGAGG-AACTAGAGAGACCCAGGCAGAGGAAGCCGGGAAATGGAACTGGGAGATCACACTCGCCCA-GTCGGGGTTTCTGCTCCCAGGAAGGAG-TGGAGGCAACAGGGCAAGAAAGACACGTGCATTTTTCACAGTTCAGTCGAAACCATAATCATATTAATATGTTTGTGGATGCTAAGACGTTGGCTGTAAGCATCAAATACTTT-----TCAAAGGAAGAGGCAGGGGACGTGGCATCGTGAAAAATAGCACCAATTTTCCATTTGATTGTAAGCTCTTTAGCACTCCAGGAGGG s mm5.chr11 118588031 523 + 121648857 ACAGCTCACGTCCTTCTTTGGACAATTGGATTTTCAGGAGGATGACAGAGAAGGGAGGGGTGGCCATGTGATGACTAACAT-CTGGAGCTACACTGG-GAAATCAGCCTGATTTC----TGCTTCCCGAGGCCCAGGTGTTTGGAACTGTGCAGG-CAAAACAAACGTCAGGATGC-TAATGG-----CTCTTCCTGGTTC-CCAGAATC-CTTTCAGCAGGAAGCAGATGTAGGCTAGGTTTGGAAGGCTGGAGAGAGCCA------AGGGGGAGG-AATGGAAGAGACCCTGGGGGGCCAGACAGGAAAATGGATCCAGAAAATAATGAGGACCCACGGCTGGATTTGTGCTCCCAAGAGCAAAATGGA--------AGCAAGAAGCCTGCACGCTTCTTTCAGAGCCCAGTC-AAGCCTTAATCTCATTAAAACATTTGTGGATGTGGAAATATTGACTAGAAGCGTCAAATGC--T-----TAAAAGGGGTGGGCA---------GCATCATG-AAAACAGCAGAAATCTTCCATTTGATTTGAAGTTCTACCAGACACTTAGAGGG s canFam1.chr18 28792939 523 + 66173745 GGAAGGCGCATCCGCC--TGGACAGACAGATTCTCCAGAGGACAGAG-AAGACACCGTGGTGTCCACGGGATGACAGACAT-CTGGATACACACTGG-AAAATCAATCTGATTTCTCCGGGTTTCCCAAGAGCCAGGTGTGTAGCACTGTGAAGG-CA----AAACACCTGAATTT-TAACTGATT--TTGCCCCCCATGC-TCCTCACCCCCTTTGGCGCAAGGTGAGTGCAAAC-AAGTTCAGGAGGCTGGAGACAGGAGGAGATATGAGAGATG-GATGCGTGG---CCAG--AGGCCAGCTGGAGAAAGGGAAACAGTGGGGCGCAGGCAC----GCCCGGCTCTGGGCTCCCAAGGCCGCGATGGA--------AGCA---------CGTGC---TCTCTCTGTACGCTGCAAACAGTAACCACATCACAGAG--CGCGGGTGTTAGAATGTTCACTAGGCACGTGCAATACTTTATTTAAAAAAAAAAAAAGCAGGAAATGTGGCATTGTGAAAAATGACAAGGATTTTCCATTTGACTCTAAAGTCTTCAGAGCAGGAGAAGG- a score=88062.0 s hg17.chr17_random 1736284 666 + 2618010 TAGAACCTCGACAGCGTCTTCTCTTTTAGGAGGTGCAGAGACTGCCCAGGGCCAGCACAAAAGCATGGATTCAGGtcctggggctgccacaacaaagtcccacaaaaccaganggctgaaaacac-agaaacttattctctcacagttctggaggccaggtgtttgaaatcaaggtgtcagtggggccaggctctctcaaaaggctccagggggactccctcccgtgcttccctcctcgctcctgggggccaggggcaatcccaggtactccggggcttgtggctgcgtctctctgacctccgcctctgtcttcatgcagccttctcc---tctgcccttctttgtacaagggcagcagtcgttggacttagggccaccctgatcctgtatgacttcatcttatctaactataccntgcaaaggtactgtgtccaaataaggcaggctctgaagttctaggtggacatgaacaggggatggggggcagctcaacccactacaAAGGGCTTGTGAANGGGACTCAGGCAGGCTCCGGGGCAGGTGGAC---------TCCAGCA-ATCCTCTG-----ATCTCCTCCACGTC----CCCGACGGACAGGGTGTCACCCAG--------GAAGCACTCCAGGGACAAGCCATTCACCATCTCCCC-----------TCCTCCAGCCCTGGGGGAGCCTCCTCTACTGGAA s panTro1.chr19 78889570 663 + 82489036 TAGAACCTCGACAGCGTCTTCTCTTTTAGGAGGTGCAGAGACTGCCCAGGGCCAGCACAAAAGCATGGATTCAGGtcctggggctgccacaacaaagtcccacaaaaccaga-ggctggaaacac-agaaacttattctctcaccgttctggaggccaggtgtttgaaatcaaggtgtcagcggggccgggctctctcaaaaggctccagggggactccctcccgtgcttccctcctcgttcctgggggccaggggcaatcccaggtactctggggcttgtggctgcgtctctctgacatccgcctctgtcttcacgcagccttctcc---tctgcccttctttgtacaagggcagcagtcgttggacttagggccaccctgatcctgtatgacttcatcttaactaactatacc-tgcaaaggtactgtgtccaaataaggcaggctctgaagttctaggtggacatgaacaggggatggggggcagctcaacccactacaAAGGGCTTGTGAA-GGGACTCAGGCAGGCTCCAGGGCAGGTGGAC---------TCCAGCA-ATCCTCTG-----ATCTCCTCCACGTC----CCGGACGGACAGGGTGTCACCCAG--------GGAGCACTCCAGGGACAAGCCATTCACCATCTCCCC-----------TCCTCCAGCCCTGGGGGAGCCTCCTCTACTGGAA s canFam1.chr18 28793462 668 + 66173745 CAAAGCAGAGGAAGCACCTTCCCTTTCGTGCCACACAGGGAACGCCCGGGGCCGGGGCAGCAG-GTGATTCCACtccctagggcttctggaa--------cccaaaatcggg-ggcttaagacaagagaaatatcttttctcacagtcctgaaggccagatgtcccaaatcaaggcatc-----------tccacctccgaggactctggtcagaaaccatcccaggcccctctcctggcttctgggggttgctggcaatccttgggcttccttggcttgtggcaacatcacttt-acctctgcctctgtctccacatggcctcccccatgcattccctccttc---taagggca--aatcactgaattcagatcccacctaatccagcaggacctgatcttaaccaattacatc-ctcaaagaccctatttctaaggaagac---cactgggattccaagtggacacaaattttga--gggatactattcaacacacaTCGAAGGGATCAATAA-TGAAATCAGATGAGCTTCAGAGCAGCTGGCCAtcacctgatccagcgtgtcctctgtgggaacctttcctaccttacaaccctccg--cacggcaccacccagctctgcccgagcaaccacggtggcagggtgctccccacgtcccccgacagactttccctcaag----gggaagacctgcactgctggga a score=8422.0 s hg17.chr17_random 1736950 57 + 2618010 AACATCCTTTTCAACAGCAA-CCAAATTCTCCTCTGGCCGTCGTCCAGGTTGGAGTTC s panTro1.chr19_random 1644528 57 + 57627672 AACATCCTTTTCAACAGCAA-CCAAATTCTCCTCTGGCCGTCATCCAGGTTGGAGTTC s canFam1.chr18 28794130 57 + 66173745 aacattc-ttccaacgttgatcccagacctgctgtgctcgtcatccagttgggaattc a score=23614.0 s hg17.chr17_random 1737007 188 + 2618010 AGACCTACCTTCTGGAGTAACGAAAAATAACAAAAACAGCAATCGTGGCTGCTTCCCGCACCCTGNGAGCCCAAGCCAACcaca----------cgcgcacacacgcacatgcacacacatgcacatgcacacacacacgtgcacacat--gcatatg--cacacacgcacatgcacacatatgtacatg--cacacatgcaca s panTro1.chr19_random 1644585 177 + 57627672 AGACCTACCTTCTGGAGTAACGAAAAATAACAAAAACAGCAATCGTGGCTGCTTCCCGCACCCTG-GAGCCCAAGCCAACCACA----------CGCGcacacac----------------gcacatgcacacacacacgtgcacacatacgcatatgcacacacacgcacatgcacacatatgtacatgcacacacacgcaca s mm5.chr11 118589896 179 + 121648857 AGAAGCACCTTCTGAGGCCCTGGAGAATAAGGAAAGCAGTGTCCATGGCTCCCTACTGAACCA---CAGGCCAGGGCAGCCACAGGGGTGAGCCCGTGCCTATAC----------------ACACATAGATGCACACGCTCCTACAGCTGTTCTTATG----GACCAGGTCAGCCACAGATGTGTGCATGACTATACACACA-- s canFam1.chr18 28794187 156 + 66173745 gcttctgccttctggagtgatgaggaataagGAAG--AGTGACCGTGGCTCCTTCCTGCACCATC-AAGCCCAG--------------------CACACAGATGC----------------CCACAGGTGTGCATAGAGATCCCCACAGGTacaaaca-----acacacagatgcccacagatgcaca----cacaagtgccca a score=5951.0 s hg17.chr17_random 1737195 149 + 2618010 caagcaca---ntgcacacatgtgtgcatgcac--------gcatatgcacacatacacacatgcacacgcgcacacacaTGCACGCGCGGacatgcacacacacatgcacaca--catgtgcacatgcacacacgtgcacatgca--------cacacaGGGACATGCA s panTro1.chr19_random 1644762 168 + 57627672 ca--cacagacatgcacacacacggacatgcacacacacggacatacacgcacatgcgcacatgcacacgcgcacacatgcacacacacggacatgcacacacgcgtgcacacacgcacatgcacatacacacatgagcacacgcacacacatgcacacatggacatgca s canFam1.chr18 28794343 81 + 66173745 ----------aaggcacaaaca-------------------------------------------------gcacacagatgcat------acaggtgcacacagatgcccaca--ggtgcgcaaaggcata----------------------cacacaggtgcacgta a score=5423.0 s hg17.chr17_random 1737344 116 + 2618010 Cacacgcacatgcacaca--tacgcacatgcacacacacg------------------------------tgcacacatacgcatatgcgca----cacacgcacacaCGCACATGCACAAATATGTacatacacgcacgncacacagacat s panTro1.chr19_random 1644930 139 + 57627672 cacacgcacatacacacacgcacacacatgcacacacacggacatgcacacacgcgtgcacacacgcacatgcacacatacgcacatgcacacacgcacacgcacacatgcacacgcacacatatgtacatgcac-------------acac a score=54737.0 s hg17.chr17_random 1737460 639 + 2618010 gcacacacacggacatggacacacacggacatacacacacatgcacacatg------------------cccacatgcacacacacggacatgcacacacgcacgtgcacacatgcacatgcacacatgcgcacacacatgcacacgtgcacacacgcacgtgcacacacgcgcacacacatgcgcata--cgtgcacatgcatacgcgcacatgcacacacg--catgcacacatgtgcacacccgcgcgtgcacaca--cgcacgcacgcacgcacacatgcacacacgcacatgcacacacgcacatgcacaca------cacgcacacacacggacatgcacacacgcacaTGCACACATGTGCCCATGCCGTCNCTGTAGGTATTTCTCAGGCGACCCCCTCCACACCCTGA-TGCCCTCCTGGAACCCCACATGATTCTCTGGGGGTTCCTCAATGGTCCCAGAACCTGGCTCCACCCTCCACAGCAGGGCAAACGGCAGAGAAGGGTTATCATTCCTGCCCTTGGGACCCAGGCTGTCCACTGTGACGTCCTT---AGCTGCCACATCACACCCGATCTCATTTCAGNGCTGGTTTCTTCTACGCCGTTCCTGGGG----ACATCCAGACATCA-GTGGGNGTACT---TCTCTTACTCCTGTTAAAGTTAATC s panTro1.chr19_random 1645069 624 + 57627672 gcacacacacggacatgcacacacacggacatacacgcacatgcacacatgcgcacatgcacacgtgcacacacatgcacacacacggacatgcacacacgca--tgcacacacgcacatgcacacat----acacacat------gtgcaca------------------cgcacacacatgcacaca--cacggacatgc--acacacacgtgcacacacgcacatgcacacatacgcaca--------tgcacacatgcacacgcacacacgcatacatgcacacactgacatgcacacacgcacatgcacacacatgtgcacatacatacacggacatgcacacacgcacatgcacacaTGTGCACCTGCCGTC-CTGTAGGTATTTCTCAGGTGACCCCCTCCACACCCTGA-TGCCCTCCTGGAACCCCACATGATTCTCTGGGGGTTCCTCAATGGTCCCAGAACCTGGCTCCACCCTCCACAGCAGGGCAAACGGCAGAGAAGGGTTATCATTCCTGCCCTTGGGACCCAGGCTGTCCACTGTGACGTCCTT---AGCTGCCACATCACACCCGATCTCATTTCAG-GCTGGTTTCTTCTATGCCGTTCCTGGGG----ACATCCAGACATCA-ACGGG-GTACT---TCTCTTACTCTTGCTAAAGTTAATC s canFam1.chr18 28794424 463 + 66173745 gcacac----------------------acatacccacacgtgcgcacagg------------------------------------------------------------------cattcacacag------------------gtgcacat-----------------agcacacaGATGCCCACAGGTGTGCAAAGGCATACACTCGGGTGTGTACAGG--CATACACACAGGTGCACA--------TG-------------------GCACACAGATGCCCACAGGTGCATACACACACAGAGGTGCACGTG------CA--------------------------------------------------GTC-CCACAGCTACTTTGCAAACAA-CCTGTCCTCATCCTAACTGCCATCCTGGAATTCTGCACAAGTGTCTGGAGG-CCCAGAATGTGCCCAGAACCTGGCTCCAGGCT-CACAGCA-GTCCAATGGCAAAGAGCTAAGAGAACTCCCTCCATC-ACACCTGGGGTGTCCACCAAGACACTCCTAACAGTAGCTGCAATAGGCT---GCTTGTTTTAA-GCCCATTTCTTCTGCACTATTTCTGTAAATCTATGTCCAAACATGGCATGGGTGAGCTCTCTTCCTTACCCCTGTTAAATGTAATC a score=25501.0 s hg17.chr17_random 1738099 310 + 2618010 CAACttc-------ttttttttttttttgagatggagtctcattctgttgccnnangngntngggnagtgcagtggcacaatctcagctcactgcaagctccacctcccaggttcaagtgactctcctgcctcagcctcccaagtagctgggactacaggcacgtgccaccacgcccggcttatttttctatttttagtagagantgtggtttcaccatgctggccaggcgggtctcgaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgctggaattacaggtgtgagccaccacgcccagcc s panTro1.chr19_random 1645693 311 + 57627672 CAACttctttttttttttttttttttttgagatggagtctcattctgttgcccagggc-----gggagtgcagtggcacaatctcagctcactgcaacctccacctcctaggttcaagtgactctcctgcctcagcctcccaagtagctgggactacaggcacgtgccaccacacccggcttatttttctatttttagtagaga-tgttgtttcaccatgctggccaggtgggtctcgaactcctgacctcaagtgatccgcccgcctcggcctcccaaagtgctggaattacaggtgtgagccaccacgcccagcc a score=5767.0 s hg17.chr17_random 1738409 29 + 2618010 TGTCCTTCACTTTGTATTATCCCAAAGTT s panTro1.chr19_random 1646004 29 + 57627672 TGTCCTTCACTTTGTATTATCCCAAAGTT s canFam1.chr18 28794929 29 + 66173745 TGTCCCTCAGTTCGCATCACTCCAGGGTT a score=2064.0 s hg17.chr17_random 1738438 264 + 2618010 GAAACCCAGCACCGAAGGGCTTGATCCAAGCTGGGGGAAACCGTTGAGNCAGGAATGGAGCCCTGAGCAACCCNTGCAAAGCCAACGATACCCAGCGAGGGGGCCATCCTGAATCTACACATTTTCAAGGTGCAGATATTAAATAACCATAGTAAAAGCACGTCTCTACCAACAGGCAGAAGTGAGACTTCACTGAATCATGTTGG----------TCGTTAGAGTTTGCAATACACTGAGTGCCTGGGTGGCAAATTCTGACC-------------------------------------------------TGTACAAGTG s canFam1.chr18 28794958 268 + 66173745 CAAAGCACG-ACTGAAGAGCTTGACCCAGACCAGCAAGAAACAGTG----------------------------TGCAGAGCCCA----GCAGAGTGGGTGAGTGGTCATGGCTCTATACTTTTTAAGGGTATAGCTATTAAATCATTGTA----------------ACTAACACAGAGA------GCTTCACAGAGTCATTCTGGATGGCTTTTATCCTTCAAGTTTAGAAGATACTGAATTCCTTAATGGAAAATTCAGACCTTCGCTATTTCCATGAATTTCTTTTTTTCCCCCTGGTTTTACTGAGCTATGTATGATTG a score=10893.0 s hg17.chr17_random 1738702 1444 + 2618010 TCCATGAACTTCTCA-----------------------GTGATGACTGT--CGGGTCAATGTCAGTTTCATCGGGGCATAACCCAGTGTCCTTCAGAAACCAAGTGCGG---GAGTCGTGCATGTCACTAAATGTTCATGCGTGCCTGCAGGACTCAGGGGCACGTGGCTGTGTGGGATGCAGCCTCTATGGGAANGCTTGCTGCTAGCACTGCTAGCACGTGTTACTAGGTGTACANCAGGCTAACCCAGTCACCACCCACAAAGGCAGCAGCTGCTGGTGGCTGCTCTCACCCGTGTGAAGACACACACATCATACAAGATCGAGCGTGTGTTCATGACACCGCTTAAGAGACACCCGAATCCGGGGAGAAGGATAAGGGACAGGCTGCAGAGAAGACCGCAAGCTAATCTCAGACCTCTCAGACCCTGAACTGTGCGTGTCTTTGAATTCACCCTTAATGTAAATTTCATT-CTCCTTAGTTCAAGATCTTTCAAAAGTAGGGCTTTTCTAAGGTGTCCTTTCANTTCTCATTCTCCTCCTGGAGACTCTCTGTGGGTTTCTCTTCAGCCATGCACATGTTACTAGGTATACACAGGCTAACCCAGTCACCACCCACA--AAGGCAGCAGCTGCTGGCCACCACCGCCAGCCAGACTCACATCTTGGCACACCTTCAGACCGCCTGCCCGTGGAGCCTGATGGGNGTGGGGGGNNTGGCAGGACCGAGCCCCCTCCTTCCAGTTCCAACCTGCTCTTGGAGAAGCATCTGTCACGGGGAGTGGCAGCCCCGTACCCTGCACCCTCCCCGGGCTCTCCCTGCCTCCCCGAGACTCAGCCAGAGGAGGTGGGGCTGGGAGGTGGCCTCTCCCTCTCACAGGGCCAGACCACCACTGCTCTCCCTCCCCCAGgtctgagttggctcaggccaccgtctcagaggaccgcagactgtggatgtaaacanttcattctcccgcagatcttgaggccagacgtccaagatggagatgtcagcaggacggcttccttcggaggcctctctccttgctct-----cagctggccgtcccctccctgtgtcctccacagccgtcc--ccatgtg-gcctgcattctacattccctcttccactgaggacaccagtcaggttggattggggcccatcc-caccacctcatttcacctgaatcacctcttcaaagatcctctctccaaacacggtcacacgcagaggtcctgggagttaggacg-----gcaccatatagattttgaggggCCCATGATATACCTGNTTTCTTCTACTAATGTCTTTATTCCAACACAGCCACAGTGGTTCCTGTTCTGCAAACGTGGCAGAGCCTCCGCTCCTCCCCTTCCCCA--GCTGCCACTCCCCATCAGCCACAGGCCCCATCTCTACCACGCCCTGTCCTCAGTGCCCTCCTGGCCTCCCCACTGCCCT-GCCTCAGCCCAGACCCTCAGCTC s canFam1.chr18 28795356 1077 + 66173745 TCCAAGAACTTCTCATGGCAGCCATGGGGCAGTACCGTGGGGTGACCGTGACAGGTCAGGGTCAGTTTCGCTGGCGCATGACTCGGTGTCCCTTCTAGGCCAGCTGCAGCCCGCACCCTCCCAGTCACTAAATGCTCTCACGCG-----------CACGGACACGTGGATGTGTGCCCTGCGGCTCCCGTGGGTA--CTTGCTGCTGCCAC--------------------------------------------------------------------GTGGCTTCCCACACCCACACAACAGCACCTTCATCCTACAAGATGG-------------GACACGGCCCCAAAGCCACCCAAG---GGGGTAGAGGA---------------GGAGAAAA-----------------------------CTAAACCATTTTTGCCTTTGAATTCATTATTACT-TGGATTTCATTGCCCCCCGGTTTAAGATCTTCCAAAA----GACGATACTGTGTTGCTACTTCATTGATGCACTTCCTCCCAGAGAC-CCCTGAGGCACGGTCTT-----GTTCCCAGGCTCCTGTGCAAACACGACCTAATCATGTCACCACCAATAAGAAGGTAGCAGCCACCGGCC----TTGCCAGTCAGACTCACAGCTTGGCGGGCCT---GTCTGCCTGACCGGG-----TGGTGGGGCTGGAG--------------------CTGCCTCACCGTGGCGGTGGACTCTGGAGAAGACATCCATC-TGGGGAGTGCCTGCCTGGCATGTT-------------------------------------------agcagcccaggctgg--------------------cagcgtcaa--caacac---------------------------------------------------------------------gcacttgtttctgc-------ctccaggctggaggtctgggatgaaggtgccagtggggctggtt-cttctgaggcctctctcctgggctggtagacgaatgaccatcttccccctaaa---cccacaggcgtccctccatgtatgtctgtgtcctg-atgcccgct----------------------CTGGATTGGGGCTAACCCACATGGCCGCGTGTAACCT-AACTGCCTCTCCCGAGGCCCCACCTCTGGATACAGGTGCATCCTGAAGTGCTGGG-GTTAGGGCTTCAACTCAACGCACAGATT--------CCCTCCATGTGTTTA-----------CAACCTGCTTCTCCCTACACAGCCG----GCTTTCC---------------CAGCACCTGT-CTCCTCCCCTCCCCCACGGCACCCCCACCCCA-CAGCCAC-----------------CCCTCTGGGCTTTGGGCACCAC---CCCACCCCCTGCCCTGGCCACACTCTGGGCCCTCAGCTC a score=4724.0 s hg17.chr17_random 1740146 25 + 2618010 CCTCCCCTACACTCATGTACACCTG s panTro1.chr19_random 1696033 25 + 57627672 CCTCCCCTACACTCATGCACGCGTG s canFam1.chr18 28796433 25 + 66173745 CCTCGCCTTCATTCCTGCACACGTG a score=125129.0 s hg17.chr17_random 1740171 1415 + 2618010 ACCGGGGAGCCAGAAACGTGCCCCAGCCCTGTTACTGCCCCAGCAGAATCCTTCCCAGCTGAAGAAGAGACTGCCTCCACTCAGGATCCTtccctgacctctgcaggtgtgctcatccccatctacagatgaagaaactgaggACTTGATAGACGCAGAGCAAGGTATNGGGGTCAAGGCTGAACTTCTAGAAGCAACCAAAACTACCAAAAAACTGGTTCAAGAACACCACCATGCCCACTGCTGCCCACAGCCTGGGCGCTGAGTTTGAGATACCCCACAGGAgggaggtagaatactggccccaaaatgtccacgtcctaacccctggaacctgtgactatcttaggttacacangcaaggaggaaggaaggttccnagatgggattggggttgctcactggtganccttgagatgggaggtgatcctggatgatccaggtggcccaacgtaaccacagggtccttaaaagtggaagaggagactgggcgcagtggctcagacctgtaatcccagcactttgggaggccaaggcggggtggattgcttgaggtcaggagtttgagaccagcctggccaacatnggtgaaacgctgtctctactaaaaaataaataaataaaaaattagccaggcatggtggcccacacctgcaatcccagctacttaggaggctgaggcaggagaatcgcttgaacccaggagatggggattgcagtcagccaagactgcaccactgcactccagcctgagcaacaagagctaaactctgtctct--------------aaaaaaaaaaaaaaaaaaagtnggaggaggcaagagagtcggtgtcagagacaatgtgatgatggaggtgggtcggagagagctgtgctgctggctccgcagggtgagggcttccatcttgaagaagg-aagagggagctgggagccaaggagcgcaagcagcctccagagactagaagaggcccggaaacagaccgcacctttgacactccagaagggaatgcagcctttctgcattttagcccagagaggccagtgtcggacttctgacctccagaacggcaagataatgaacttctgtgttttaagccactangngtttgttgcagtttgttacggtagtcctagaaaactTAATCTACCACTTCTACACCAAGAAGGGTGACGCTTCAACCACCCCAGTACAGCTTCCTAGAGAGGGGAGGCCTCATCTCCTTCCCCGAGACCCGTCagctcccggatcagggtctgccatggacacacctgcctggccaagtccgggccacatggctggccttagctgcagggganggctggggaagggagGGAGNGCTGGGGAAGGGAGGGAGGCAGCCCTCACCCTACTAAGTTCCATCATTCCAGAAAGTCCTCCATCACAGAGAGGCCTCNCAGTTGCC s panTro1.chr19_random 1696058 1418 + 57627672 ACCGGGGAGCCAGAAACATGCCCCAGCCCTGTTACTGCCCCAGCAGAATCCTTCCCGGCTGAAGAAGGGACTGCCTCCACTCAGGATCCTTCCTTGACCTCTgcaggtgtgctcatccccatctacagatgaagaaactgaggACTTGATAGACGCAGAGCAAGGTAT-GGGGTCAAGGCTGAACTTCTAGAAGCAACCAAAACTACCAAAAAACTGGTTCAAGAACACCACCATGCCCACTGCTGCCCATAGCCTGGGCGCTAAGTTTGAGATACCCCACAGGAgggaggtagaatactagccccaaaatgtccacgtcctaacccctggaacctgtgactatgttaggttacac-ggcaaggaggaaggaaggttcc-agatgggattggggttgctcattggtga-ccttgagatgggaggtgatcctggatgatccaggtggcccaacgtaaccacagggtccttaaaagtggaagaggagactgggcgcagtggctcagacctgtaatcccagcactttgggaggccaaggcggggtggattactggaggtcaggagtttgagaccagcctggccaacat-ggtgaaacgccgtctctactaaaaaataagttaattaaaaattagccaggcatggtggcccacacctgcaatcccagctacttaggaggctgaggcaggagaatcgcttgaacccaggagatggggattgcagtcagccgagactgcaccactgcactccagcctgagcaacaagagctaaactctgtctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagt-ggaggaggcaggagagtcggtgtcagagacaatgtgatgatggaggtgggtcggagagagctgtgctgctggctccgcagggtgagggcttccatcttgaagaaggaaagagggagctgggggccaaggagcgcaagcagcctccagagactagaagaggcccggaaacagaccgcacctttgacactccagaagggaatgcagcctttctgcattttagcccagagaggccagtgtcggacttctgacctccagaacggcaagataatgaacgtctgtgttttaagccacta--ggtttgttgcagtttgttacggt-gtcctagaaaactTAATCTACCACTTCTACACCAAGAAGGGTGACGCTTCAACCACCCCAGTACAGCTTCCTAGAGAGGGGAGGCCTCATCTCCTTCCCCGAGACCCGTCagctcccggatcagggtctgccatggacacacctgcctggccaagtccgggccacatggctggccttagctgcagggga-ggctggggaagggagGGAG-GCTGGGGAAGGGAGGGAGGCAGCCCTCACCCTACTAAGTTCCATCATTCCAGAAAGTCCTCCATCACAGAGAGGCCTC-CAGTTGCC a score=28272.0 s hg17.chr17_random 1741805 340 + 2618010 ATGGCCAAGGTGCTTCGGCACTTCTGGAAGTAAGGGCCCTGCCGACCCTCCACTCACAGGCAGCCCTTGGAGCCTGCAGACGCCTCTCCCATGTCANCTGAGGTTCTCCCACCTCTGAACTCACCCTTAGAAGGCAcccccgccccccgccccccgccccATCCNTCAAGGAGAACCATCCGGAGCTCCCACTTTGGGCACACTCACTGCCAGCCAAGCTCAAGGA-AGGGGTCCCCACCACGAAGCGCCCCAAGGGCAGGACTCCTGCCCTGTGTACTCAGAGACTGGGGAAGGCAGCATGTGTGTGTGTTTNAAGNGGCGTGattgaggtgtgactggc s panTro1.chr19 78895297 332 + 82489036 ATGGCCAAGGTGCTTCGGCACTTCTGGAAGTAAGGGCCCTGCCGACCCTCCACTCACAGGCAGCCCTCGGTGCCTGCAGACGTCTCTCCCATGTCA-CTGAGGTTCTCCCACCTCTGAACTCACCCTTAGAAGGCA-------GCCCCGCCCCCCGCCCCATCCCTCGAGGAGAACCATCTGGAGCTCCCACTTTGGGCACACTCACTGCCAGCCAAGCTCAAGGAGGGGGGGCCCCACCACGAAGCGCCCCAAGGGCAGGACTCCTGCCCTGTGTACTCAGGGACTGGGGAAGGCAGCATGTGTGTGTGTTTAAAG-GGCGTGattgaggtgtgactggc a score=14538.0 s hg17.chr17_random 1742145 145 + 2618010 atatggcacacctcccatggttaaagggtacagtttatgcgctatgacatgcagatatgcccgtgaaaccatcaccaccatcaggatagggaacatatccgtcacccccaaggtttcctcctg--ccctgatgt-gccctcctccntc s panTro1.chr19 78895629 144 + 82489036 atatggcgcacctcccatggttaaagggtacagtttatgcgctatgacatgcagatatgcccgtgaaaccatcaccaccatcaggatagggaacatatccatgacccccaaagtttcctcctg--ccctgatga-gccctcctcc-tc s canFam1.chr18 28798053 126 + 66173745 ACACAGCAAAGCACACAGGATTAAA-GGTGGAGTTCGTAAGTTCTGAGGTGTGGACGTGCCCCCGGTCC----------------ACAGCGAACGCAGCTAC--CCCCAGAAAGCTCCTCCCGCACCCTGAGATCtccctcctac--- a score=55635.0 s hg17.chr17_random 1742290 332 + 2618010 ctcctccctctccctgtattccccacccccgggcaaccactgccttgctgtctgtccctgtaca-------tgagtttgccttttctggagtttatataagtgaaatgacacagtacatacttctttgttg-cctggctgccttccctcagcaccgttccccagagatgcggccatgcccttgcctgcaccaaaggttcactccttttcattgctgagtagtattccatcgcatggatgtgctacaatttgcttagctgct------------------------------gttggtgtacat----ttatctccaggttaggggtatcgtaaatcaaggcactatcaacatttggatggacatgtgcttttat s panTro1.chr19 78895773 332 + 82489036 ctcctccctctccctgtattccccacccccaggcaaccactgccttgctgtctgtccctgtaca-------tgagtttgccttttctggagtttatataagtgaaatgacacagtacatacttctctgttg-cctggctgccttccctcagcaccgttccccagagatgcagccatgcccttgcctgcaccaaaggttcactccttttcattgctgagtagtattccatcgcgtggatgtgctacaatttgcttagctgct------------------------------gttggtgtacat----ttatctccaggttaggggtatcgtaaatcaaggcactatcaacacttggatggacatgtgcttttat s mm5.chr11 118590577 353 + 121648857 CCCCCCCCACCCCCTG----CCCTGCGCCCAGCCACCCATCTGCTTCCTGCCTA-ATCTGCATAACACAGGTAAGCCTAAATTTTCTGTACTTTATATACATAAAATGACA-GGCATCTGCTACTCTTCTG------------TCACTCAACACAAT--CCCAAAAAAGGGTCTGTACAGCCGCGTGCATCAAAGACGCGCTCCTTTTCACTAAGGGGTAATATT-CACCATGTGGATAGGTTGTCACTTGCTTACCTGTTTGTGTATATTTCAGTTATTTTATTTATGGAATCAGTATGCATTGAGTTGTTTCTGGTTTGGGGGTATTTCAGCGCAACCTACTGTGAACATTCATGTGGACAAACCTCTTTAT s canFam1.chr18 28798179 283 + 66173745 cccttcctgcacccactgccccccgcctcgagccaaccactgatctgttctatg---------------------------------gaattttacataagtaacattattcagcacagaccctcttcttggtccggctccttgcacgtagcgtcattccccagagaggcgagcacgctgccgagcgtatccgagcctcactccttgttactgctgagcggcactcccgcgcatggGCggac-------------------------------------------------gtctgag---------tgatctccagcgtggggctatcaccagtgcagctgctgtgaacgttcgtCTGGACACGTGCTTTCAT a score=2805.0 s hg17.chr17_random 1742622 22 + 2618010 ttttAAAAATAAGTGAGTTTGG s panTro1.chr19 78896105 22 + 82489036 ttttAAAAATAAGTGAGTTTGG s canFam1.chr18 28798462 17 + 66173745 -TTT----ATAAGCAAGGTGGG a score=11046.0 s hg17.chr17_random 1742644 116 + 2618010 ggccaggcgtggtggctcacacctgtaatcccagcattttgggaggctgagtgggggcggatcacctgaggtcaggaattcgagaccagcctggccaacatggtgaaatcccatct s panTro1.chr19 78896127 116 + 82489036 ggccaggcgtggtggctcacacctgtaatcccagcactttgggaggctgagtgggggcggatcacctgaggtcaggaattcgagaccagcctggccaacatggtgaaatcccatct a score=17268.0 s hg17.chr17_random 1742761 197 + 2618010 ctactaaaaatacaaaaatcacctgggcatggcactaggtgcccataatcccagctactcaggaggctgaggcaggagaattgcttgaacccgggaggtggaagttgcagtgagccgaaatcgagccattgcactccagcctgagcaacaagagcaaaactccngtctcaaaaataaataaataaaTGAGTTGGGTA s panTro1.chr19 78896853 196 + 82489036 ctaccaaaaatacaaaaattacctgggcatggcgccaggtgcccataatcccagctactcaggaggctgaggcaggagaattgcttgaacccgggaggtggaagttgcagtgagccgagatcgagccattgcactgcagcctgggcaacaagagcaaaactcc-gtctcaaaaataaataaataaaTGAGTTGGGTA a score=17751.0 s hg17.chr17_random 1742958 107 + 2618010 AAGGTGGGCATGTGGCCCACTCTCACCCNGCCCACACACGTGCGCAGACGGGGGTGGCTGCGGCCGCTAGGGCATGGGAGGCAGCACCCCTTACCACCAGCGGAAGC s panTro1.chr19 78897049 106 + 82489036 AAGGTGGGCATGTGGCCCACTCTTACCC-GCCCACACACGTGCGCAGACTGGGGTGGCTGCAGCCGCTAGGGCATGGGAGGCAGCGCCCCTTACCACCAGCGGAAGC s canFam1.chr18 28798479 102 + 66173745 CAGGCAGGCGGGGGGCTTGCTCTTACCC---ACACAAACGTGCAAAGAC-GGGATAGCTGTGGCCTCT-GGGCATGGCAGAGAGCATCCATTACCACCAGCAGAAAA a score=86287.0 s hg17.chr17_random 1743065 593 + 2618010 CCCAACTTT-GAGAGCGAGGGGGTTTGGGGGGACGAGGT-----GCTGTTTATGGTTTTGCAGTTGCTCCAGGGGAAAGGCGGGCTAATGAACAGTTAGTGGGAAATAGTTTATTGAAGTGAACAGAACAAGAATACATTAAAATTATTAAGACTGTG------------GCCTGGGGCAGTAAGCGGCATCCT---GTTTTCTCATAGTTTACATGACAGTGGGAGAACACAGGAAGTGGGGGGAGGATGCTGGGGGCAAGGAGATGCAGGGAGGCCTCTGCCAAGGGTCAGGTGGACCAGAAACTTCCCTGGACTCATCCTCCAAAAGTTAGCATCTTCTAGCAGACCCTCCAACCNTTTNGCACCTCCCACNCCCNATNCCNCATTCCGTCCACAGCAGTGCCT--CCTAGCCACTTCTCTTTGCTTACTAACAAAAGAAAAGGGGGAAAGCCTTCCTTCCCAGCTAGGGCAGGATGCTGTCTCATCACCTGTCTCAGCGGGC---CACGCCA-GTAAGCAGGAAGCGGCCACTGTCGCTTCTGCAGGGAAGGAATGGGCTTCCCGGT-GTCTCCGGGGCT-------TAAT------------------ACTAAA-----ATCATCATCCCCCGTCTGGAACCAGGA s panTro1.chr19 78897155 587 + 82489036 CCCAACTTT-GAGAGCGAGGGGGCTTGGGGGGACGAGGT-----GCTGTTTATGGTTTTGCAGTTGCTCCAGAGGAAAGGCGAGCTAATGAAGAGTTGGCAGGAAATAGTTTATTGAAGTGAACAGAACAAGAACACACTAAAATTATTAAGACTGTG------------GCCGGGGGCAGTAAGCGGCATCCT---GTTTTCTCATAGTTTAGATGACAGTGGGAGAACACAGGAAGTGGGGGGAGGATGCTGGGGGCAAGGAGACGCAGGGAGGCCTCTGCCAAGGGTCAGGTGGACCAGAAACTTCCCTGGACTCATCCTCCAAAAGTTAGCATCTTCTAGCAGACCCTCCAACC--TTTGCACCTCCCA--CCCCAT--CCCATTCCATCCACAGCAGTGCCT--CCTAGCCACTTCTCTTTGCTTATTAACAAAAGAAAAGGGGGAAAGCCTTCCTTCCCAGCCAGGGCAGGATGCTGTCTCATCACCTGTCTCAGCGGGC---CATGCCA-GTAAGCAGGAAGCGGCTACTGTCGCTTCTGCAGGGAAGGAATGGGCTTCCCGGT-GTCCCCGGGGCT-------TAAT------------------ACTAAA-----ATCATCATCCCCCGTCTGGACCCAGGA s mm5.chr11 118591052 495 + 121648857 CACAGCCTG-GGAGGAGAGTGGG-----------GAGCT-----CCTATCTGTG--------GCTGCTCT-GGAGAAAGATGCGCTAATGAATAATTGATGGGAAATTGCTCATT-ATGTAAACAGAACAGGAACACGCTACAGTTGTGGAGACAGTGATGACAATCTACATCCGGGGCAATATGTGGCATC-------------------TGCATGAGACCAG----ACAGAGGATGTGGAGGGTGGAAGC---------------ACAGAGAGGCCTTGGCCAGGGGTGAAGGGGACAAGAAGCTTCCCTGGGCTGGTCCTTCATA---------CAAGTAACTGTCCCCCTA--------------------CCCCAA--CCCAGT-------CAGAGATACTT-CCCTGTCTAGTGCTCTTTGC--------------------------ACTTCTCCCTCAGCCAGGGTTGGATTC--ACAGATCATCTTTCTGGCCTGGCCAACACACCATGTGAGCTAAAAACATCT-CTGTCTCTTCTGCTAGAGAGCATGTGGCTCCCCAGT-CGCCTCAGGACTACTGCTCTGGT------------------ATTAAATCAGTATTAAGACCCTCGGTGCAG----GGGA s canFam1.chr18 28798581 544 + 66173745 CCCAACTTTGGGGAGCAGGGGAGCTCGGGGG---GGGGTTACAAACTGCCTGCATTCTCATGGTTGTTGCAGGCAGAAAGCAAGCTAACGAACTGTTAGTGGGAAATAGTTCACTGAAGTGAACAGAACAAGAATGCCACAGAATTATTAAAATCATG------------GCCTGGAGGACCATGTGGCATTCTACAGCTTTC----AATTCAGATG---------------AGCATGCTGGGGTAGGATGTGGGGGGCACGGAG--ACGGGGTGGGGGCAGCCAGGGGTCAGGTGGATCAGAAGC-CCCCTGGATCCATTCTCTGCAAACGAGCATC-TCTACCAAGCCCCCTCGCT-----------------CCTGCATGCCCACCCCGCCCACAGGGCCCCCTAATCCAGCTGTTGCTTATTAT---------CGACGAAAGCAGGGACCCCTCCCTTCTAAACCAGAGCCTGA---------------------AGCAGAC---CAGCCAA-GTAAGCAGGAAGCAGCCCCTGCCACTTCTGCA------CAGCGGGCCCCCGGGCAGCCTCCAGGGCC-------TACTTAGGAAAACGGACAGACCCTTAGA-----ATCATCGTCCTCCAGTAAAATTTAGAA a score=1175.0 s hg17.chr17_random 1743658 5 + 2618010 TTCTC s panTro1.chr19 78897742 5 + 82489036 TTCTC s mm5.chr11 118591547 5 + 121648857 CTCTC a score=191.0 s hg17.chr17_random 1743663 2 + 2618010 AC s panTro1.chr19 78897747 2 + 82489036 AC a score=1855.0 s hg17.chr17_random 1743665 23 + 2618010 GGccccatctgcattctcctttt s panTro1.chr19 78897749 23 + 82489036 GGccccatctgcattctcctttt s mm5.chr11 118591681 14 + 121648857 GGCCCCAAGGGC---------TA a score=28372.0 s hg17.chr17_random 1743688 239 + 2618010 ttgtgcca-atagcaggattctcgatattcagctgggcacctcatcgtccaggataaagaccacgcctcccgg-----------gctgggtgtgagtctgtgactactctcccaccgatgggatatacacagaagtgacagctccagctcccgggtcacacactgaagg---------gggca-------tccccccatctctaccgc----atgtttgncaatgcggtgaattgtgagccttcttgggccaagncatgtgg-gccgacacc s panTro1.chr19 78897772 237 + 82489036 tcgtgcta-atagcaggattctcgatattcagctgggcacctcatcgtccaggataaagaccacgcctcccgg-----------gctgggtgtgagtctgtgactactctcccaccgatgggatatacacagaagtgacagctccagctcccgggTCACACACTGAAGG---------AGGCA-------TCCCCACATCTCTACCAC----ATGTTTG-CAATGTGGGGAATTGTGAGCCTTCTTGGGCCAAG-CATGTGG-GCCAACACC s mm5.chr11 118591695 225 + 121648857 TAACGCTA-GCAGCAACAACCCTGACAATGAAGCTGGTCCCTCTCTGTCT------CAGACCACA-CTCAGGG------TGGCAGCTGGGTGTATTCCTGTGGTTG---------TATTGTGACAGAAAAGGAAATGGC-GTGGCAACCTCCAGGTCCTTTGCTAAAGGGA-----CAGGACA------CTCTCTATATCTTCTCCCCTAAGAGGTTTG---------TGAATTGAAAACCATTTTAGACCAAA---TGTGGAAATAACATC s canFam1.chr18 28799154 255 + 66173745 TTATGTCAGATAACTGGA-ccccgacatttagct------------gtgcaagataagggccatacctcctggcctccctggcagccaggtatgatcacgtgactacactgtggccaatgggatgta-aAACAAGGGGCACCTACAGCTTGTCGGTCATGCCATCAGGGGAGACCCCTGAGCTCACCCTCACCTCTCATTTCCTCCAC-CAGAGGCTTG-GAATGTGAACAAAGGAGGACCCTCTGAGACCAAG-CATGTGGAGGCAGCACT a score=3327.0 s hg17.chr17_random 1743927 103 + 2618010 cttaggatggggagtcccgagagagaaggtgctcg-agcctcc-ggtgacctcccggggctCAGCCACCTGCCTCCAGATGGTCACTTCTGAGAAAATTAACTTC s mm5.chr11 118591920 98 + 121648857 CAAAGGATGAGGAACCATAGGAGAGAA--TGCTGGCAGCCAC---GTGACCCTGTGGAACTCAGCCACTTGACTTGA-ACTGTCAATTCAAAG-AAATTCACTTC s canFam1.chr18 28799409 83 + 66173745 CTGAGGAC-AGGAACCCCAGAAGGAGA---GCCTG-GGTCTCCAGGTGACCTCCTTGAGCGCAGCCACCTCCCTCTGGACAGTCCCTC----------------- a score=629.0 s hg17.chr17_random 1744030 90 + 2618010 TGATCTGTGGAAGACCCNATGGAAGCCNTGGAGCCNTCGGTCATGCTC--AGCCTCATGTATGTCTTAACGGAAACACCATTTCTATCTCAA s canFam1.chr18 28799492 66 + 66173745 TGACTTCCTGAGGGCTC--------------------------TGCTTAGAGTCCTGTGCACATCCTAACTAGAACTATGTTTCTGTCTCAT a score=43166.0 s hg17.chr17_random 1744120 324 + 2618010 TTCAGCCTCGAGCCTCAGAATGAAACAGGAAGATGCACC-CAGCAAATAA---TACTTTTGGCATGTTACTAATAAAATAAGGNaaaggaaaaacctggggctcagac-ggtcatctgatttgccaacagccacacacggaggtgtg-accaggctggggactgcaggagccctggccct---tccctgtccagggaatgtgccctctgaggagcctggtctgttattctgTTTCCAGCAGTAGTAATCAAGGACCCTGGGCTCCCAGGTGACTTTGACCAGTGCCTCCACCTGATGCCACCTTCCCCCCAGGTGCATCTTCAACATAGCTTC s panTro1.chr19 78898236 323 + 82489036 TTCAGCCTCGAACCTCAGAATGAAACAGGAAGATGCAGC-CAGCAAATAA---TACTTTTGGCATGTTACTAATAAAATAAGG-AAAGGAAAAACCTGGGGCTCAGAC-GGTCATCTGATTTGCCAACAGCCACACACGGAGGTGTG-ACCAGGCTGGGGACTGTAGCAGCCCTGGCCCT---TCCCTGTCCAGGGAATGTGCCCTCTGAGGAGCCTGGTCTGTTATTCTGTTTCCAGCAGTAGTAATCAAGGACCCTGGGCTCCCAGGTGACTTTGACCAGTGCCTCCACCTGATGCCACCTTCCCCCCAGGTGCATCTTCAACATAGCTTC s canFam1.chr18 28799558 310 + 66173745 CCTAGCATTGAACCTCTG-------CACAGAGCTGCACCACAGGCTACAGGATCACTGCTGATATACTTTGGGGAAAACAAAG-AAagg--aaacctaaggccaggacaggccatcaga-ctgcca--ggccacacagtgaggcacgcacaaagctggggttggatggatctcctgCACCAGGGCCTGGGCAGGGGAGCGTGCCCTTTCCCATGCTGGGTC--TTGTTTTGTCCCCAGCAGTGGCAATAAGTGACCCTAAGCTCCCAGGCTCTTTGGACCAGTGCCCCTCCCAG--------TATCCCCCATGTGCATCTTTAAGACAGCTGC a score=193530.0 s hg17.chr17_random 1744444 1638 + 2618010 CCCCACCCTCTGGAGTGTCCA---------------------------------------------------------------GCTGGGCACAACCAGGC---------CCCATG------GCACCTGAGAAATAGGAACACAGCCTCCCCGGTGAAGT--AGAGGAGAGTTTAAGCCAGGACTTTGCCTGTGCCGAGGGCCTGGGAGCCGGGCTCAGCTCTG---CCTGCCTGCCAGGGATGGGA-----------CCAGGGCTCGGCTTTCTCCTCTGCTAA-----CAGGAAAGACCCCATAAGCCCTCAGGCCTGACTCCAGGAGTGAGACCTGTGATTCTATGTGAAACAGCCCCAGGCTGCCCACAGCAAGCCAAAGAATAAGAGCCCGCGCCTCTCCAAGGATCCGAGACCCAAGCAGCCTGGTGCCTTCTGCAAAACCTCTTCCTGCTTCTCTTCTGCAGGGAGCAGCGGCGTANGTGGCTGGGGTGGTAGGGANG-GANGANGGTGAGCTGCTTATTNGCTGGAGATGACTTTCCTCTCTCCTCCTCCTTCTCTGGGCAGNCTCNGTTTTTTCCAAAATAACTCTTCTTCCTCCCTCCCCAGGTTGCTAGTTTCTGTCTCTCCTCCAGGCTTCCAAGTGCC---CCCTGCAAGGGCAGCCGGCGGAGGGAGCAGGGGAGG--GCTTACG-TTCTCAAGATGCAGAAGTACAAGCGTAGACAAAAGAGACCCCCACGGTCCCCGTCAACCCCCTCACCTCTGTTTGAGC--CCCCATCACTCCCCTGGGC-TGCCTCTCTCTGCTGGCGGCAGAACAACTGCACAGAGGCTCTGCTCAGGCCTGCTCCCCGCCCAAGGGTCCTCACAGCATCCCAGGCCTCAGAGAAAGCGGCTGCTTTAAGCATTTAAAAGCTCCTA-CAGGCTCAACTCCCCCTCCTCTGTTCCAGGACCCCCAACTCCAAACAAACAGGTGTGCTGATCTATGCTTGACCAGGCCGGAGCCCTGGTCCCCAGCTGCCCTTGGCTCAAGTCACCCTCCCAGCCTAGCACATCCTTCTGTTCCCCACCCCAAACAAGGACAGACCTAGGGATGACCAACCCCGG---------------------------CCTGGCCCCAATGCGCCTCCTGCTCAGACCTCTGCAAACCTGATCGTTTCCCCCTCGAAGACTCCCCTGGATTGTNGGGACACCAGTTCTGATCTGAGATCTTAGGGCTAACACAGGAAATTAGGGGATGGGTGCATAGATGCAATCCCNTGNCTTCATCACAAGGCCGCAGAGTCCTTGTCTGCCATGACGTGCCCGGGTTTAGACTGAAGAGGCAGGAGCTGGGGCCAGCGAGGGGAGCCCTGAACTCC----ATTCCttttaattgaggcgaaatttatataacataaaagtagcca-tttaaagtgtgcaattgaggggcactcggtgcattcacaatgttttgtagccagcacctctatcttgctgca----ccttccatcatcccagaaggaaagaccttacccatgaggcagcaattcccntgtctcccACCACTGGACTTTGTGTTTTCTTGGAAAGCTTTTGATCCGAGTGCCAATCTGCCCTCCAGAAAGGCAGATTGTCTATTTGATGATAAATAGACAAAAGGCAACTTTCTCCTATTATTCTTGCTTCACAGCACCGGCCCT-TTGGAATAGGAGCATCACACTGCCCTTGTCCCCTGGGCTTGACCACTGCCCCAAGCAACACGAGGGGG s panTro1.chr19 78898559 1623 + 82489036 CCCCACCCCCTGGAGTGTCCA---------------------------------------------------------------GCTAGGCCCAACCAGGC---------CCCACG------GCACCTGAGAAATAGGAACACAGCCTCCCCGGTGAAGT--AGAGGAGAGTTTAAGCCAGGACTTTGTCTGTGCCGAGGGCCTGGGAGCCGGGCTCAGCTCTG---CCTGCCTGCCAGGGATGGGA-----------CCAGGACTCAGCTTTCTCCTCTGCTAA-----AAGGAAAGACCCCATAAGCCCTCAGGCCTGACTCCAGGAGTGAGACCTGTGATTCCATGTGAAACAGCCCCAGGCTGCCCACGGCAAGCCAAAGAATAACAGCCCACGCCTCTCCAAGGATCCGAGACCCAAGCAGCCTGGTGCCTTCTGCAAAACCTCTTCCTGCTTCTCTTCTGCAGGGAGCAGCGGCGTAGGTGGCTGGGGTGGTAGGGAGGAGA----GGTGAGCTGCTTATT-GCTGGAGATGACTTTCCTCTCTCCTCCT---TCTCTGGGCAG-CTCGTTCTTTTCCAAAATAACTCTTCTTCCTCACTCCCCAGGTTGCTAGTTTCTGTCTC--CTCCAGGCTTCCAAGTGCC---CCCTGCAAGGGCAGCCGGCGGAGGGAGCAGGGGAGG--GCTTACG-TTCTCAAGATGCAAAAGTACAAGCGTAGACAAAAGAGACCCCCATGGTCCCCCTCAACCCCCTCACGTCTGTTTGAGC--CCCCATCACTCCCCTGGGC-TGCCTCTCTCTGCTGGCGGCAGACCAACTGCACAGAGGCTCTGCTCAGGCCTGCTCCCGGCCCAGGGGTCCTCACAGCATCCCAGGCCTCAGGGAAAGCGGCTGCTTTAAGCATTTAAAAGCTCCTA-CAGGCTCAACTCCCCCTCCTCTGTTCCAGGACCCCCAACTCCAAACAAACAGGTGTGCTGATCTATGCTTGACCAGGCCGGAGCCCTGGTCCCCAGCTGCCCTTGGCCCAAGTCACCCTCCCAGCCTAGCACATCCTTCTGTTCCCCACCCCAAACAAGGACAGACCTAGGGATGACCAACCCCGG---------------------------CCTGGCCCCAATGCGCCTCCTGCTCAGACCTCTGCAAACCAGCTCGTTTCCCCCTCGAAGACTCCCCTGGACTGT-GGGACACCAGTTCTGATCTGAGATCTTAGGGCTAACACAGGAAATTAGGGGATGGGTGCATAGATGCAATCCCT--GCTTCATCACACGGATGC-GAGTCCTTGTCTGCCATGACGTGCCCGGGTTTAGACTGAAGAGGCAGGAGCTGGGGCCAGCGAGGGGAGCCCTGAACTCC----ATTCCTTTTaattgaggtgaaatttatataacataaaagtagcca-tttaaagtgtgcaattgaggggcactcggtgcattcacaatgttttgtagccagcacctctatcttgctgca----ccttccatcatcccagaaggaaagaccttacccatgaggcagcaattccc-tgtctcccACCACTGGACTTTGTGTTTTCTTGGAAAGCTTTTGATCCGAGTGCCAATCTGCCCTCCAGAAAGGCAGATTGTCTATTTGATGATAAACAGACAAAAGGCAACTTTCTCCTATTATTCTTGCTTCACAGCACCGGCCCT-TTGGAATAGGAGCATCACACCGCCCTTGTCCCCTGGGCTTGACCACTGCCCCAGGCAACACGAGGGGG s canFam1.chr18 28800084 1522 + 66173745 CCCTGCCCCCAGAGGCATCCACAACACATGTCCACCATGACAAGATGCCGCTGAAAATGAGACCCTAACTTCCAGGGACTGTTCACCGAGCATGGCTATGTGGCTCCTAACCCATGAGGCCAGTTCCCAAGAAATCAGAAGGTGACCTCCCTGGAGAGGGCAGGCGGGCAGTCCAAggcggga--------ggacagagggcttgggtacctggcccagcacagccacctgtacgacagggacacaccattcacatctccaggactccactttctcctctgctaagggtgggggacaaaccccat-ggccccccagcacatctccagGA-------------------------------CAAGAT-CCCACCTGAAGCCATAGGA--------------------------------------------------TCGGCA---------------------CTGCAGGGAGCAGCTATGTCAGACACTGGGG----------G-CA----CGTGAGCTGCATATT-GTTTCTGGGGATTTCCCTCTCTCCACTCCTCCCACAGGAAAT-CCACTCTTTTTCCAAACTAGCTCCTCAGCCTTGTTCCCCAGTTTGCTAGTTT-TGTCTG-CTTCCAGGAGCTCCATTGTCACGTCTTGCAGGGTGGG--GGTGGGGGTGGCACCGCAGGAAGTGTATGATGCCCAAGCTGCAGAAAT----TCGGAGTCACACCAGGAGCCCTGGGTCCCCCAAAACCCTGCCCCTCCAGGTTGGGCTTCACCATAACCCCTTAGAACATTTTTCCCCCCAGAGCTGGTGGAGCAATGGAGACAATCTTGTTCTCAGATCTGC-CCCTGCTCAAGGGTCCTTGCTGTGCCCCGTCCCCAACAG-----GGCTGC-TTGAGCAACTAGAAGCCCCCAGCAG-----ACCTCCCTCCCTCTG----------ACCAGCTCAAAATAGA---ACACATCGACCTCTCCTTGGCTGGGTGGCAGTCCCCGTCCCCAGCCCCCCCCACCTAGAACCCCCCCCCCCAAGGAG--------------CCCCACCCC---CAAAGACAGGCCAAGGGATGACGGACCCTGGACGAGCACTGTGGACCACGTGCTGACCCCTGGCCTAGATGTGCCCTCTGCTCAGCCTTCTACAGACCCAGCTGTGCTGCTGCTGCAGACTCCCCTGGACA---GAGGAGCCCGTGCTGATCCGCGACCTCAGGGCTGACACAGCAAGCCAGAAG----------CGGTGCGTTCCCT--GCTCCATCGCAAGCTGCCGGAGCCCCAGGCAGTCATGACACACAACACATCAGGCTGAAGTGGCTGGGAGCAGGGCCAGCAAGGACAGCCTTGTGCTGCTTTTTTtttttttaattgaggtgaaatttgcacaacatagaattaaccattttaaagtgcatgactcagtagcatctagaaccttcacaagattgtgcaaccatcacc-ctatctggttccaagacatctctgtcat-ccaaaaggagacgttgtacccactaggcagacactccc-tgttccccGACTC------CTGTGCT------------TTTTGATGCAGGTG----------------------------------------------AATAAAATACAATTTGCTC--ATTGTTCTTGCTCCAAAGCACCAGCACTCTTTGATCAGGACTGTCACACAGTCCTTGTGTTCCTGGCTTGACCACTTACCCCACCGATACTCGGGGG a score=0.0 s hg17.chr17_random 1746082 28 + 2618010 CATGAAGACCACAGCAGTGTCCTGAGCT a score=191.0 s hg17.chr17_random 1746082 2 + 2618010 CA s panTro1.chr19 78900182 2 + 82489036 CA a score=2962.0 s hg17.chr17_random 1746084 26 + 2618010 TGAAGACCACAGCAGTGTCCTGAGCT s panTro1.chr19 78900184 26 + 82489036 TGAAGACCACAGCAGTGTCCTGAGCT s mm5.chr11 118592926 25 + 121648857 TGTAAACAGGAATAAAGTCCT-AGAT a score=229746.0 s hg17.chr17_random 1746110 1063 + 2618010 GCCTTCCTGATCGACT---TTGCTATTTGCCCAAAGAAAGGAGTAGCTCATGCAGGGCCNTTTGTTCattcattgattcaacaacta-ttctttgccacctttgaagtgaccggctctggggcaggcagaggggcccacaggcacgagcaagatgcaatcctgcccccgtgnccctgggtgtggagttggggagnacaggtgggtgaacagccagataacAAGTCCACCTGGT-AAGTGCTCTGAGAAAAACC-TGAAGAAA---------TAATCAACCTATAGGGTGGCTTTGCCATCTTCTCCAAATATTGTCCTCCAAATT---------TCATGCAGCCATCTTCACCTCCCAGGCCATCTTTAACTACCAAAGCCAGGGCCACACATGCTGGGTGACACCTCAGCAT-GCagggacttgaagaggccactcacaaaagaagactgagaaatgactccaaagcagggacagtgt-cgaaccccaccagtca-ccaaagcaaagcaaatcaaaacaaaag-----cccacttccattttt-tccacctgccagattttgaaaatgcccattgcacccagtgcttcag--ggggtgcggggaaatga-cctctcattc--gcttgctggtgggattcgga----gtcagtgtaatctttctggagggcagattggcactcggatcaaaagctttccnaaatgntgtttaacctttaactcggcaattccacttataggaatttaccctaaggagaaactcagg-aacaaacacaaagacttatctggaaangatttatgtactagaatatttgcaccattgctcataacatcaaaagattgaaaacaaactaaatgtccaactccagggtgcttggtaaataatttgtgcactcattaaaaatcctattgtagaagaata---ttgaatgccattgcaaagtgtttataaaccattaaatgaaaagatttataaaa--cagaatgtgcaaagcaatcccaTTATACTCCCCAGGCCTCCGAAGCaggctggaaggacaca-ctcctgggcctggcagcggtttcctctgtgtaagtggacgacgggctanttttgtattttctttnttt-- s panTro1.chr19 78900210 1060 + 82489036 GCCTTCGTGATCGACT---TTGCTATTTGCCCAAAGAAAGGAGTAGCTCATGCAGGGCC-TTTGTTCattcattgattcaacaacta-ttctttgccacctttgaagtgaccggctctggggcaggcagaggggtccacaggcatgagcaagatgcaatcctgcccccgcg-ccctgggtgtggagttggggag-acaggtgggtgaacagccagataacAAGGCCACGTGGT-AAGTGCTCTGAGAAAAACCCTGAAGAAA---------TAATCAACCTATAGGGTGGCTTTGCCATCTTCTCCAAATATTGTCCTCCAAATT---------TCATGCAGCCATCTTCACCTCCCAGGCCATCTTTAACTACCAAAGCCAGGGCCACCCATGCTGGGTGACACCTCAGCATAGCagggacttgaagaggccactcgcaaaagaagactgagaaatgactccaaagcagggacagtgttcgaatcccaccagtcatccaaagcaaagcaaatcaaaacaaaag-----cccacttccattttt-tccacctgccagattttgagaatgcccattccacccagtgcttcaa--ggggtgcggggaaatga-cctctcattc--gcttgctggtgggattcgga----gtcagtgtaatctttctggagggcagattggcacttggatcaaaagctttcc-aaatg-tgtttaacctttaactcggcaattccacttatgggaatttaccctaaggagaaactcagggaacaaacacaaagacttatctggaaa-gatttatgtactagaatatttgcaccattgctcataacatcaaaagattgaaaacaaactaaatgtccaactccagggtgcttggtaaataatttgtgcactcattaaaaatcctattgtagaagaata---ttgaatgccgttgcaaagtgtttataaaccattaaatgaaaagatttataaaa--cagaatgtgcaAAGCAATCCCATTATACTCCCCAGGCCTCCGAAGCaggctggaaggacaca-ctcctgggcctagcagcggtttcctctgtgtaagtggacgacgggcta-ttttgtattttcttt-ttt-- s mm5.chr11 118592951 964 + 121648857 GCCTTGGGGAGCAACTAACTCTCCTTTTGCCCAGAAAAAGCAGAGGCCC-TGGGAGGCC------TCTTCCACTGAGTCACAAGCTG-TCTTTAG---------------------------------GAGAGGACTGCAGGCAGAGAGAAGGTGGG----TGCTCCCCTGGGCATGGATGCTAAGCCTG-----GCAGATGGG-AAGCACTCAGTGACCA----CACAAGGC-GAGAGCTTCCAGCAAAA---TGTAGGAAGCCCGCCACCCACCCACCCACGGAGGAGCCCTGACATC-TCTATCAATATTTTCGTCCACAGTCCCACACACTCACACAACCATCCTCTCCTCCAACTCCATCTTTAAATGCCAAAGACGGG--CGCATATGTTGGAGGACACCATCACAG-GCAAGG-CTGGAAGAGGCAATCCACAGAGAAAGACTTAAAAATGAC-CCAAAGCA--------GT-TGGACCTTACCACTCA-CCAAGCCAATGAAAACCAAGACTAAAAACATCCCCAACTGCCCTACT-TTGACAGACCTGCTTGTGACGGGGGCTGGTGCATGCA------CAAGTGAGGCACAGGGACCTGA-CCCCCCCCCCATGCTCTCCCGTGAGACCTACACTTGCTTACCTTCGTCTTTCTGGCAAGCAGAGCCGTGTGCCCGTCAAACGCTTTCG-ACACG-CAGCTAAGCTCTAGCTGGGAAATTGCACCTGTAGG-ATTCACCCC-AGGAGAAGCTCATA-AACAAATGTGCAGTTTTGCTTAGGAA-GACTTATGCGCCCGAATAGCCTCGGCATCGCAGCTAACATCAAAAGACAGAAAACAAACCAAGCGTCCAGCTCGGGGGTGCTCGGTAAATAGCTGGTGCATTCATTAAAAATCCTACCACAGAAAAAAACCTTTGGGTGTCACTGCAGTGTGTTCATAAGCCAC------AGGAGGGTTGGAAGG--AGGAACT-------------------------------------GCAGGGTGGAAGGGCA------------GTGACACCAA-GTCCTTTGCAAATTTGGACAACGGGTGA-CTTTGTGTTTTCTCTCTTT-- s canFam1.chr18 28801606 1031 + 66173745 ACCTTCCCAA---------CTGCCTTCTACCCAAAGGAAGTAATTCCTCATGCAGGATC-TCCattcattcgtggattcaacaagtatttctcaggcacgttctaagtgtccagctttgggtcaggc--agtgacccacaggcctgcaaagggtccaatcctgccatccaggcgctgggtgccaagctggagga-gcagatgggtaaacagctaaaggacaatgccacatggtaaagcactttgagagaaaca-tgaagAAA---------TATTCCACCCACAGAGTAGCCCTGCCATCCTCCACGAGCATTTCCATCTGCACGCCCACGC--CAGCACGGCCACCTTCATCGCCAGCGCCATCTTTACATGCCTGAGACAGGGACACGTGTGCAGGACAAGACCACAGCCG-GCA----------------ACtcacaaaagaagactttaaaaggaccccaaagtg-ggaaggtgt-ctgatctcaccagcca-ccaaagcaatgcacatctaaacaaaaa-----cacacttccatttttctccaccagctggattctgaaaccgctgattgcatccagtgcttctg--------ctgggaaatgaccctctcgcgc--gcttgctggtgggatccgaa----gct-gcgtaatcctcctggagggcagattggcactcggatcaaaagctttca-aattg-tgtttaacctttaactcagcaattccacttgtaggaatttaccctaaggagaaagtcagg-aacaaatgcaaagatttatctccaaa-gatttatgtactagaatatttgca-----gcttatggcttc-aaagactgaggacaagctaaatgtccagctgca-ggtgcatggtaaataatttgtgcactcattaaaaatcctattgtagtagaaca---ttgaatgccactgcaaagtgttcataaGCCATCAAATGAAGAGGTTTATAAAAACCAGAATGTGCAGTAAGTGCCAATTCCATGCCTCCAGCGTCCAG-ACAGGATGGAAGGATGCAGCCTCCAGGGCTGGCAGCAACTCCCTCTGTAGA--TGGACATCGGGTGG-TTTATTCATTCATCTTTTTTA a score=44801.0 s hg17.chr17_random 1747173 283 + 2618010 gaattttatgattatattctaaattttctacattggatctgaatcgtatttgtaattaagaaaaCTATAAGGAAAAATTT--TTTNAACTTGGTAAGGCATGTCATGGATCCAGTTTCTCCCCCAAGGTACCAGCTCACAGGGGAAGGAAGACTAAAGGACTG------------CTCCCTGATGAACGTGGGGATCCGCCTGTAGGGTTTCCACGATGCTCGAGAACCCCGCAGAGTCTCAGGCCTTTGACCAAGAAGACTCCAGAGTGAGCGCCTTAGGGAAACACGGTCGGCCA s panTro1.chr19 78901270 282 + 82489036 gaattttatgattatattctaaattttctacgttggatctgaattgtatttgtaattaagaaaaCTATAAGGAAAAATTT--TTT-AACTTGGTAAGGCATGTCATGGATCCAGTTTCTCCCCCAAGGTACCAGCTTACAGGGGAAGGAAGACTAAAGGACTG------------CTCCCTGATGAACGTGGGGGTCGGCCTGTAGGGTTTCCACGATGCTCGAGAACCCCGCAGAGTCTCAGGCCTTTGACCAAGAAGACTCCAGAGTGAGCGCCTTAGGGAAACACGGTCGGCCA s canFam1.chr18 28802637 268 + 66173745 GAATTTTATTGTC-TACCCTAAGTTTTCTACATTGGACCTAAAC--TATTTGTAATCAAGAAAAATACAAGGAGTGTTTTTATTT-AACTCGATTAGAAATGTTACAGAGTTGATTTACCCTCCAGGGGACGAGCTTGATGGGGGGGGGGGTGGGAGGGACCGAGGATGGAAGGCATCCCTGATGAATGTGGGGAGCCACCTGCAGGGTTT--------------------GAAGGGTCTCATGCCTTTGACCAAGAAG----CTGACAGAGCGCCTCGGGAGAACACGGTCGGCT- a score=34809.0 s hg17.chr17_random 1747456 145 + 2618010 AGCATGCAGCACCTCCGTGCCCAGACTGGATACGGCACTAATGATGCAAACAAGTCATCGCTCAGTCAGGGAGATGGGTCATTGTTGCTGTTGTTTTTATTTGTTGTTCAGTGGCCAGATGC-AAACGTGTTGCATAAGAGCCACC s panTro1.chr19 78901552 145 + 82489036 AGCATGCAGCACCTCCGTGCCCAGAATGGATACAGCACTAATGATGCAAACAAGTCATCGCTCAGTCAGGGAGATGGGTCATTGTTGCTGTTGTTTTTATTTGCTGTTCAGTGGCCAGACGC-AAACGTGTTGCATAAGAGCCACC s canFam1.chr18 28802905 144 + 66173745 -GCGCGCTGCACCT-CGCGAGCTGACTTGACACAGCGCTGATTATGCAAATCAATCACTGGCTAATCAGGGAGATGTGTCTTTGCTGCTGTTGTTTTTATTTGTTGCTCGGTAGCCAGACTCAAAACATACCGCAGAGGAGGGACC s galGal2.chrUn 26676809 131 - 165033910 AGCAAAGTGCGCCTCGGTGCCGTGATTTGACACGGCGCTAATTATGCAAATTAATCACTGGTAAATCAGG--TGTGTGTATTTG-----------TTTATTT--TGCACAACAACCAGGCAGGAGGAGCGCTGCCAAAGCAGCACT a score=5275.0 s hg17.chr17_random 1747601 43 + 2618010 CAGA-GGCGGCTTGAGCTCTTCTCGGAGGAAATGTGGGTACTGT s panTro1.chr19 78901697 43 + 82489036 CAGA-GGCGGCTTGAGCTCTTCTCGGAGGACATGTGGGTACTGT s canFam1.chr18 28803049 44 + 66173745 AAGACGTTGGCTTTCTTTATTCTAGGAGGAAATGTCCATGACAT a score=17999.0 s hg17.chr17_random 1747644 138 + 2618010 GTTGCTTGATCCTGCCTCTTGACAGTCCTTTCCAGATTCAAGTTTAAATGGGTTTGCCGGTATCAGGATGTTAGGGGCTCTCCAAATGCCAGTGGAGCAAATGGCCCA--TTG---CAGACACATTTCCAACCCT----CATCAGGG s panTro1.chr19 78901740 138 + 82489036 GTTGCTCGATCCTGCCTCTTGACAGTCCTTTCCAGATTCAAGTTTAAATGGGTTTGCCGGTATCAGGATGTTAGGGGCTCTCCAAATGCCAGTGGAGCAAATGGCCCA--TTG---CAGACACATTTCCAACCCT----CGTCAGGG s canFam1.chr18 28803093 135 + 66173745 GCCGC-CGATCCAACCTGCTGATGCTCCTTT-CAGACCAGGCTGTACGTTGATTTGCCTGTGCCACGGC----AGGGCTCTCCAAGTGTCATCGGGGCTCACAGACCC--CTGCCACGGCCAcactctggccctc----cctcagcc s galGal2.chrUn 26676976 144 - 165033910 GTCGTGCCATCCAACCTTCCCACCTCCTGCCTTAAGATTACATTCCCATTGACTCGTGGGCATCACACCATTCCTGGCTCCCGGTGTGTCACTGCAGGGAACAAACCACGCTG---GGGACACAGCCACAGCACTATTCCAACAGGG a score=57651.0 s hg17.chr17_random 1747782 368 + 2618010 GCTTCTCAGGAAAAGGCCCAGCCCGTGTTAATTATTATTTGAACACAAGTTCTGGAAGTTTCATCCNTTACA----AAATATTTTTAACGCTCGTGGTTCAGGAGAGGAAG--------GGNAGAGAAGTGAGTaacacttactgactccctactatgcactaggcacctaacgtgtattttctcgtttaaccctc--aaaataatgcagcg-ggtctgcattattgaccccagtttacagttgtggaaactgagtctctgagagtc-----------------------------------taagtgacCCAGACCTGCAAGGTTTGCNTCAGCACCCAGTAGCAGGCTTCCCCCAGAGCAAGCAACCCGGAAAAGCACGACAGCCCCCGCCCCACGAGGTGGAGGCCACAGTCTCT s panTro1.chr19 78901878 378 + 82489036 GCTTCTCAGGAAAAGGCCCAGCCCGTGTTAATTATTATTTGAACGCAAGTTCTGGAAGTTTCATCC-TTACAAAATAAATATTTTTAACGCTCGTGGTTCAGGAGAGGAAGGGAGAGAAGGGAGAGAAGTGAGTaacacttactgactccctactgtgcactaggcacctaacgtgtattttctcgtttaaccctc--gaaataatgcagcg-ggtctgcattattgaccccagtttacagttgtggaaactgagtctctgagagtc-----------------------------------taagtgacCCAGACCTGCAAGGTTTGC-TGAGCACCCAGTAGCAGGCTTCCCCCAGAGCAAGCAACCCGGAAAAGCACAACAGCCCCCGCCCCACAAGGTGGAGGCCACAGTCTCT s canFam1.chr18 28803228 391 + 66173745 tcttctcag---aaggcccacacccag--ggtgatcatttgaaCTGTAGTTCTGGAAGTTTCACCA-TTATGAAATATGTATTTTTAAGGCT-ATGACTCGTGAGAGGaat-------------agaacaaaatgacatttactgaattcctaccatgtgtgaggcacctaacatgcattttctcatttaatcttcaaaaaacaatgctgtgaggtcaacatgattgtccccagcttacagataaggaaactgagtctctgagggTCttttttaattttttatttttttttttttGAGAATATAAATAACCCACACTTTTGGGGCTGGc-tcaggacttggcagctggcttcccccaaaacaagccatctgagagagcacgagagagtcc------caggaaagaggccgcaggcttt a score=64255.0 s hg17.chr17_random 1748150 731 + 2618010 TCAGAACCTCATGGCCAGGGACGGCCGTNCAGAGCCAGAGTCCACTCAGACAGCAAAGCAAGTCGTCTCTCCACTACCTCACGCCAGTGCCTCTTGcatttggattaaccagggtgatttctaaatctggacgtccatcctgcagcccacacagggtgcagtcaaccctctggggtgggactcgcatcaggacgttgaaacctcccccggcggctccagtgtgagaaccactgCAGATGTGGGAAGGAACCCTCCAGCCTTCAAATCACCACATCATCTGCCTCGGCCATCTCAAGAAATTCATCAGGAAGTGTGGGTCTAAACACTCTATAGATGCCCCCAGGGTCAAGAAGGAGACACGGGCAGTGAGAGTGATTCCAGGAAGAAAGTCGTTGACTGCAATTCACACGGTGCACGGGCCTATTTGGAGGCTTAGGGAGGACCCAGATGTGAATTTACAAGCCAGTGTCAGACACCAGCTTGTACACTCATCTGCCTTTCAGGGACTAGGTCCTCCCAGACCNAGGAAGACATCCACCTTCAGCGTCCAGACTGGGGTCCATGAGGGACCGGCCAGGGCTGACCACNACGGGGCCTGGGAGGCACCACCNTTCNCNCCACCATTTCTCATGGTATTGACCTTTGATTATGTTCTCAAGGCACCGAGGAAGTGTCTTCTCANCNCNGCAGTGTCTCAGGAATTCCCTGCAACCCTCCCNCAGTGGCTCACC s panTro1.chr19 78902256 721 + 82489036 TCAGAACCTCATGGCCAGGGACGGCCGT-CGGAGCCAGAGTCCACTCAGACAGCAAAGCAAGTCGTCTCTCCACTACCTCACGCCAGTGCCTCTTGcatttggattaaccagggtgatttctaaatctggacgtccatcctgcagcccacacagggtgcagtcaaccctctggggtgggactcgcatcaggacgttgaaacctccccaggcggctccagtgtgagaaccactgCAGGTGTGGGAAGGAACCCTCCAGCCTTTAAATCACCACATCATCTGCCTCGGCCATCTCAAGAAATTCATCAGGAAGTGTGGGTCTAAACACTCTATAGATGCCCCCAGGGTCAAGAAGGAGACACGGGCAGCGAGAGTGATTCCAGGAAGAAAGTCGTTGACTGCAATTCACACGGTGCACGGGCCTATTTGGAGGCTTAAGGAGGACCCAGATATGAATTTACAAGCCAGTGTCAGACACCAGGTTGTACACTCATCTGCCTTTCAGGGACTAGGTCCTCCCAGACC-AGGAAGACATCCACCTTCTGCGTCCAGACTGGGGCCCATGAGGGACCGGCCAGGGCTGACCAC-ACAGGGCCTGGGAGGCACCACCTT---CCCCACCATTTCTCATGGTATTGACCTTTGATTATGTTCTCAAGGCACCGAGGAAGTGTCTTCTCA---CTGCAGTGTCTCAGGAATTCCCTGCAACCCTCCC-CAGTGGCTCACC a score=27982.0 s hg17.chr17_random 1748881 235 + 2618010 TCTCAGGAGGAGCTGCCCACACTTCCCTAGAGCGGGGGCCAGAAGATGG-AGAAATGATGGNAGACCCATCTTCACGGGCCTAGCTCCAGGACACAGGCAGACCCAGCCACCCTCAGGCTGCTNCCCCCTGGAAGAAGGATGCCAGCTCTGTGGGGTCCCTGGAGTGTCGTTTAT-AATTGC-CCTTGCACAGCACCCTGACGGAGGGTACCCAGCAGATCCCTCAAGGTTCTCCCTG s panTro1.chr19 78902977 233 + 82489036 TCTCAGGAGGAGCTGCCCACACTTCCCTAGAGCGGGGGCCAGAAGATGG-AGAAATGATGG-AGACCCATCTTCACAGGCCTAGCTCCAGGACACGGGCAGACCCAGCCACCCTCAGGCTGCT-CCCGCTGGAAGAAGGATGCCAGCTCTGTGGGGACCCTGGAGTGTCGTTTAT-AATTGC-CCTTGCACAGCACCCTGACGGAGGGTACCCAGCAGATCCCTCAAGGTTCTCCCTG s mm5.chr11 118596082 221 + 121648857 TCCCAGAAGGATATACCAAC----TCACAGAGCCCCAGGTGGAAAATGGCCTGACCAACAG-GGATGTATCATCATGACGCAAGGGACAAGACAAGGGCAGG-TGAGCC-CCCATGTTCTGTT-CCTACTGCAGGAAAGATGTCAGCCCTTTGGCATCTTGGAAGTACCATGTATAAACTGCTCCTTGCGTGACACCCTGACAGAAGGTACTCATCCGACCACC-----TTCTC---- a score=12131.0 s hg17.chr17_random 1749116 104 + 2618010 CCCCCAGAGAATGAACAGCTCACGGAC-----------AGCAGAGCTCCGTGTCAT---CCGCC---TCCTGCCAGGGCACAGGGGATCCNTGGCAGCCGATGTGCCGTGGTGCCTGCGGC s panTro1.chr19 78903210 103 + 82489036 CCCCCAGAGAATGAACGGCTCACAGAC-----------AGCAGAGCTCCGTGTCAT---CCACC---TCCTGCCAGGGCACAGGGGATCC-TGGCAGCCGATGTGCCGTGGTGCCTGCAGC s mm5.chr11 118596303 83 + 121648857 ----------------------AAGAC-----------AATAGAGCTCTGTGTCCCTTGCCACC---TCCCACCAGGGCCCTAGGCACCC-T-ACAACTGATGAGCTGAATACTTAACAGC s canFam1.chr18 28803665 108 + 66173745 CCCCCAGTAAGTGCTTCACAGACAGACCTCGGAGGACAGACGGAGCTCTGCGTCAC---CCGACCAACCCCGCC-TGGCACAGGGACCCA---GCAGCTGAAGAAGCACGGTGCC------ a score=108683.0 s hg17.chr17_random 1749220 239 + 2618010 AGGGCAGGCTGCGCAGGGAGACAG-CGAGCCCTCCGCGCTGCAGGAATGTGGGCCTCCTTCCTTGAGNAATGCAACATTTCAGCAACCAAGAGACAACTCTATTGGGAGAACAAGAGCTAATTAAATTTACTGGGATCACTGAAGATGAAATTATTTAATATTCTGAACAGAATTTAATATTTGAAAGCACGAACAGCCTTGGTTCGTTGTAGACGGGTTTTCCATCACCTGGGTCTGCA s panTro1.chr19 78903313 238 + 82489036 AGGGCAGGCTGCGCAGGGAGACAG-CGAGCCCTCCGCGCTGCAGGAATGTGGGCCTCCTTCCTTGAG-AATGCAACATTTCAGCAACCAAGAGACAACTCTATTGGGAGAACAAGAGCTAATTAAATTTACTGGGATCACTGAAGATGAAATTATTTAATATTCTGAACAGAATTTAATATTTGAAAGCACGAACAGCCTTGGTTCGTTGTAGACGGGTTTTCCATCACCTGGGTCTGCA s mm5.chr11 118596386 234 + 121648857 TAG--AGGCTGTGGAGGAAGATGGCCCAGCCTCGAACACTACATGGCTGTGAGCCTCCTTCTTCATG-AA--CAGCATTTCAGAAACCAAACGACAGCTCTATTGGGAGAACAAGAGCTAATTAAATTTACTGGGATCATTGAAGGGGAAACTACTTAACATTCTGAATAGAATTTAATCTTTAGAAGCACGAGCAGCCTTGATTCATCGTAAA-GGGTTTTCTACCATCTGGGTTCACA s canFam1.chr18 28803773 214 + 66173745 -AGTCCAGCTGTGCA---------------------CACCACAGGAGTCTGAGCCCCCTTCCTTGTG-AA-GCAACATTTCAGAAACCAGGAGACAACTCTATTGGGAGAA-GAGCACTAATTAAATTTACTGGGATCATTGAAGAGGAAATTATTTAATATTCTGAACAG-ATTTAATATTTGAAAGCATGGACGGCCCCGATCTATTGTGGGTGGGTTCTCTGCCACATGGGCCCACA s galGal2.chrUn 26677201 229 - 165033910 AGGTCGGGAGATCCAGAGGGGCTG----CCCCACCGTGCAGCACGGCCGT----CCCCTTCATTCCA-GACACAGTGCTTTGGGAACACAGAGACAACTCTATCAGGGGAACAAGAGCTAATTAAATTTGCCGCGATCGTTGGAGAGGAAATTATTTAATATTCTGCATGGGGTTTAATATCTGAGAGCACGAACAGCCGCGTTCTGTTGGAGAT--CCTTCCCGGTGCTGGGGGCAGCA a score=65.0 s hg17.chr17_random 1749459 28 + 2618010 -TTAGGAGGATCCGTATACAGATGAGGGG s panTro1.chr19 78903551 28 + 82489036 -TTAGGAGGATCCGTATACAGATGAGGGC s canFam1.chr18 28803988 24 + 66173745 -TGGGTGGGGTCCAGGTGCA----AGCCC s galGal2.chrUn 26677430 25 - 165033910 CTGCGTGGGATGCAGCGATG--TGGGG-- a score=39354.0 s hg17.chr17_random 1749487 320 + 2618010 TGGGGCCGGGGATGTGCTGCTTCTGGAAACCAGAGGAGATGGGAGAGGAACTGGAAATGGGCAGGAGGACAAAGTCCTCTTCAGGATCCTGGATGATTCTGCTCCACGTTTCCAGAGGGACCCCTGTTGGTGCCTCTAAAGTGATGGAAAATCACAGTTGTGGTGCCAGGACCCCATGTCTGGGGTCTCTGACCACTGCCTGCCTCCGCTCCACCTATCTCTAACCCAGGGTCA-TTGCTGGCCAAGTCACATGGTGAAGTCAGAGGATCCGGAAGCCAGTGCTCTTCCCTGGCATGCACGAGTCCCCGGCCACACGCTCC s panTro1.chr19 78903579 320 + 82489036 TGGGGCCGGGGATGTGCTGCTTCTGGAAACCAGAGGAGATGGGAGAGGAACTGGAAATGGGCAGGAGGGCAAAGTCCTCTTCGGGATCCTGGATGATTCTGCTCCACGTTTCCAGAGGGACCCCTGTTGGTGCCTCTAAAGTGATGGAAAATCATAGTTGTGGTGCCAGGACCCCATGTCTGGGGTCTCTGACCGCTGCCTGCCTCCGCTCCACCTATCTCTAACCCAGGGTCA-TTGCTGGCCTAGTCACATGGTGAAGTCAGAGGATCCGGAAGCCGGTGCTCTTCCCTGGCATGCACGAGTCCCCAGCCACACGCTCC s canFam1.chr18 28804012 285 + 66173745 ATGGGAGGAGACTGAACCACACAGGGGACACAGAAG-GCTCGGGGAGGAGCTGGGAGCAGGCCGAGGGGCAAGGTCCTCATTGTAACCCTGTATGGCTCTGCCCCA-GCCTCCACAGG--CCCCTGTTGCCACCCGTATAGCAAGACGAAGTCTTACCCATGAG---------CCTTGT---GGGTCCCTGGCATTTACCCACATGCACCCC-TCTTCCTGCAACCCAGTGTCATTTGTTAACCAAGTTACAC-ACAAGGTGAGATGGTCTAGAAGGCAATGGAC-TCCTTAGAATG-----------------ATGATCT a score=28110.0 s hg17.chr17_random 1749807 311 + 2618010 TGTggcggagtacagtggctcacacctgtaatcccagcacttccggaggctgaggcaggcagatcctttgagcccaggagtctgagaccagcctgggcaacatagcaagaccacgtatctactaaaaaaaaaaaaaaaaaaaa--------------gttagcaaggcctgatggtgcacacctgtggttccagctacttaggaggctaagtaaggcaggaggatggcttgggcctggaggtcaaggctacagtgagctgtgatcacaacactgtactccagcctgggcaacagagcaagaccctgccttgaaaaaTTTCATTTA s panTro1.chr19 78903899 325 + 82489036 TGTggcggagtacagtggctcacacctgtaatcccagcacttcgggaggctgaggcaggcagatcctttgagcccaggagtctgagaccagcctgggcaacatagcaagaccacatatctactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttagcaaggcctgatggtgcacacctgtggttccagctacttaggaggctaagtaaggcaggaggatggcttgggcctggaggtcaaggctacagagagctgtgatcacaacactgtactccagcctgggcaaaagagcaagaccctgccttgaaaaaTTTCATTTA a score=76106.0 s hg17.chr17_random 1750118 801 + 2618010 AAACACTCCTGTATTCCACAGGGGACACTGAAAGAGAGATGGGCACTTTTACCAAGNTCCCTGAGANTACCCAAGTTTGGACCCAGTCAGGAATTTNCTCNAGCCATTTTTCCTAAAGTCACNTCTGCAGACCATCCACGAAGTTCCTCAAGNGAGAGTTTNCTCCNTAAAGGAGCTGTCGGCCCATGTNGGCAACNCCNCACA-GTGTT----CACGGGGCCATGACTCGGCCTCCAGAGTCCGGGGC-TCGGTT---------TCCCCAGA--TACCCTGGAAAAACTGTGAGTACAGAGCCCAGGAGCCACA-GCTAAGACTCAGCC---------------------ACCTGGGGCTCCTGCATGGGCAAAGTGGCCGCCAGAAGACTCCCTG--------------GAGAGCTTG----------ACTGTG---------GGGCCCCAGGCCAGAGCCACTGTCAGTGCCAGCNGGG------------CAAGGCCA---CCACCAACCGGAGAAGCTCTGGGCTCAGGTCATTC-----CGGGTGCACCCC---------------------------CTCCNCCGGGGCG---------------GCAGCTGCAG--GGAGAACACAGAACGCGTG--------------------------TCCACCGTAGGG----------------AGGTGGGCTGGGTGG-GCAGGCCCCAGTGTGAGCCCTGCAGGGCCCTGGTCTCATGGATGCACAGGTGAGCCACC-----TCCTCACTGCCTGATCAAA-------CCCCAGATGGGCAGATGCCTCCG-----------------------------------------CANGGC--------------------CCCCAGTGGGACTTGGTGCCAGCCAGACTCCAGCGGCTGTTTTTTTTTTTAACTGTAACGGATTCTGTGTGCTCCACACCCTGAGGGCCTGGAGACTGGACATGCTTTGTAACTGAAATTAGAAGTCAATAAACCGAGGGCCAGGTGGGTCAGTAGAATT- s panTro1.chr19 78904224 788 + 82489036 AAACACTCCTGTATTCCACAGGGGACACTGAAAGAGAGATGGGCACTTTCACCAAG-TCCCTGAGA-TACCCAAGTTTGGACCCAGTCAGGAATTT-CTC-AGCCATTTTTCCTAACGTCAC-TCTGCAGACCATCCACGAAGT---TCAAG-GAGAGTTGTCTCC-TAAAAGAGCTGTCGGCCCATGTTGGCAACGCCCCACA-GTGTC----CACGGGGCCACGACTCGGCCTCCAGAGTCCGGCGC-TCAGTT---------TCCCCAGA--TACCCTGGAAAAACTGTGAGTACAGAGCCCAGGAGCCACA-GCTAAGACTCAGCC---------------------ACCTGGGGCTCCTACATGGGCAAAGTGGCCGCCAGAAGACTCCCTG--------------GAGAGCTTG----------ACTGTG---------GGGCCCCAGGCCAGAGCCACTGTCAGTGCCAGC-GGG------------CAAGGCCA---CCACCAACCAGAGAAGCTCTGGGCTCAGGTCATTC-----CGGGTGCACCCC---------------------------CTCC-CCGGGGCG---------------GCAGCCGCAG--GGAGAACACAGAACGCGTG--------------------------TCCACCGTAGGG----------------AGGTGGGCTGGGCGG-GCAGGCCCCAGTGTGAGCCCTGCAGGGCCCTGGTCTCACGGATGCACAGGTGAGCCACC-----TCCTCACTGCCTGATCAAA-------CCCCAGATGGGCAGATGCCTCCG-----------------------------------------CA-GGC--------------------CCCCAGTGGGACTTGGTGCCAGCCAGACTCCAGCGGCTGGTTTTTTTTTTAACTGTAATGGATTCTGTGTGCTCCACACCCTGAGGGCCTGGAGACTGGACATGCTTCGTAACTGAAATTAGAAGTCAATAAACCGAGGGCCAGGTGGGTCAGTAGAATT- s canFam1.chr18 28804297 985 + 66173745 AAACACCCTTGAGTCCCATGGGGAACATGG--GGGCAGGTGAGCACCTTCACCAAG-TCCCCGAGA-TA-CCAAGTCTGGACCT--TTGGGATGCTGCTCAATCTCATCACCTCGATGCCAC--CCAAAGACCAT-CATGAGGT---CCTCT-GAGAAACCATTCC-TGCAGGAGCT---------------CCACCCTGCACGTGTGTCTGGTCACCAGGACAGGACGTGTCCTCCAGAGCCCTGAGCAGCAGCTGACACCCAGCCCCCAGGCCTCTCCTCGGAGGCTTGCTGG----------AAGGGCCCCAGGCTGAGAGTCAGCCTCCCTCATCGTGAGCAGACGAGCCTGGGGTCACAGCATT----CAGGGAGCGCCATGGCACTCCAGGTGCGTCACAAATACGGGAGCAAGAGCAGAGGGAACCGTGTGTCCATGAGGACCGTGGGCTGGGGCCACCACCA--GCCAGG-GGGACTGGGCTCTGCCAAGGCTAAGGCCAGCCACCCAGGAAACTCCACGCTTCTCTCTCCCTCACGCACGTACACCCCTCTCTGGTCCTCGTCACCACGACCTAACTCTCCCGGGGCACGAGTGTCGTCGTGCGCTGGTGCAGGCGGCAAGGACAGAGCCCATGGCACAGAGTATCCGCGCTGCAGCCCCTCCACCCAGCGGCCTCCCCAGCCCCTGCAGGAAGCCTCAGTGGAGGAGGCT---------GCCCTG--GGGACCTGGGAACCTGGGG----ATGGGAACCGGCAAAGGCCTCCACGGCCCCACCAGAGGCACTGCCCGAGACGCACAGAGGGCTCAGCCAAGAGGCGCGGAGCACAGAAGGACGTGCCGGGAGGAATCCA-GGCCCGAAGAGTGCTACCACCAGCCTCAGGGAGACCTGGCCTCCCTCATACCTCAGCAGAGACTTTGGTTTTTG---GTAAGTGAT--TGTCTGCTTCATGCTCC-AGGGGCTGGAGATTGGCCATGCGTTATAACTGTGATTAGAAGCCAATAAACCCAACGCCAGGTGGGTCAGTCGGATTT a score=6519.0 s hg17.chr17_random 1750919 15 + 2618010 TCCATCGTGAGGCAT s panTro1.chr19 78905012 15 + 82489036 TCCATCGTGAGGCAT s mm5.chr11 118597747 15 + 121648857 TCCAACGTGAGGCAT s canFam1.chr18 28805282 15 + 66173745 TCCATTGTGAACCAT a score=2958.0 s hg17.chr17_random 1750934 17 + 2618010 CGGAGGCTGCTCTCGGC s panTro1.chr19 78905027 17 + 82489036 CGGAGGCTGCTCTCGGC s canFam1.chr18 28805297 16 + 66173745 CAGAAG-TGCTCTCGGG a score=78964.0 s hg17.chr17_random 1750951 650 + 2618010 ACATCAGCCCTGGCTCCTTCTCTCATCCTTCCAACCCTTCACCCCAGTGAGTGGGAGTTTCTAAGAGCNCCCGTG-TCCTGATGTGCCACCCTTGGAAGAACAAAACCCTGAGACAAACTCGTATTTTGCTTTTTTTAATTGTCTCTCCCACTTTGCTTCCTGTTCAAACAGATTATCATGCACATCTGTAATCCCCACTTAAGCACCTAAGANCCCCCTCTAAAATAACCCATTAATCCATTCCCACTCCTGTCTGCTGCTATTAACATGTTTGTCTTCGAC-GCCTTTGGCAGCTCATCCCCT--TCCTCACCGGGCTTATCTGCCTTGCCCGGCATTGGGCATCCCATCCAGAGGTGGG-AGGGGTGGCAGCCTGGAGCCCTGGAGGCCAGGGCCACCTCCNNACACNCNTNCTCCCATGCTTCCCAGACGCCACCCTCACACTCTGCTTTCTGTACTGGTGAAGGAGACAGGTAAGAA-----CTGCAGATCCACCTGCCCTTGGCCATGGGTCAG-CCCTGCCCACCTCACCGCCAGAGCCACTGGTGAGCAGGAAAGGCT-GGGGCACCTCCCCTNC-------GTCTACCAG---TAGGAAAAGAGTGAATCCCACNTTCCACCCACAC-CCTCTATTCCATTCCAGGGGATCCAAAGGCCNTTCC s panTro1.chr19 78905044 641 + 82489036 GCATCAGCCCTGGCTCCTTCTCTCATCCTTCCAACCCTTTACCCCAGTGAGCGGGAGTTTCTAAGAGC-CCCGTG-TCCTGATGTGCCACCCTTGGAAGAACAAAACCCTGAGACAAACTCGTATTTTGCTTTTTTTAATTGTCTCTCCCACTTTGCTTCCTGTTCAAACAGATTATCATGCACGTCTGTAATCCCCACTTAAGCACCTAAGA-CCCCCTCTAAAATAACCCATTAATCCATTCCCACTCCTGTCTGCTGCTATTAACATGTTTGTCTTCGAT-GCCTTTGGCAGCTCATCCCCT--TCCTCACCGGGCTTATCTGGCTTGCCCGGCATTGGGCATCCCATCCAGAGGTGGG-AGGGATGGCAGCCTGGAGCCCTGGAGGCCAGGGCCACCTCC--ACACC---TCTCCCATGCTTCCCAGATGCCACCCTCACACTCTGCTTTCTGTACTGGTGGAGGAGACAGGTAAGAA-----CTGCAGATCCACCTGCCCTTGGCCATGGGTCAG-CCCTGCCCACCTCACCCCCAGAGCCACTGGTGAGCAGGAAAGGCTGGGGGCACCTCCCCT-C-------GTCTACCAG---TAGGAAAAGAGTGAATCCCAC-TTCCACCCACAC-CCTCTATGCCATTCCAGGGGATCCAAAGGCC-TTCC s mm5.chr11 118598176 499 + 121648857 GCACCAGCTCTGTCTCCTCCCATCACTCCCTCAACA------------AAACAGGG-------------CTTGTA-ACCCAGGGTGCCACTCTCCAAAGGTCAG---TCCAAGATGAGTCTGCATCTCCC---TCCCAATCGTACCTCCCACTCAGCTTCCTGTTCAAATGGATAACCATGTCAGCCTCCAGTCCCC----AAGTTCCTAAAG---CCGTCTGCAACAG------GAGGAAGGCCCGCTTCTGTCCATGGTTCTGAACCTGTGCCTCATCA---GCCTACAGGGGATCATTCCTTAATCTCCA----GCTTCTCT--CACGCCTAGCTTTGAGCATCCTGCCTGGAGAGGGGCAAGTGTGACATCCTCAAACCT--GAAGTCA------------------------------------------------TATGTCCTGTGCCCTGTTCAGGAGGAGGAAGTTGGGGGCGGGGCCCCTCAGGCTCCACCCACACCTG--CCTGACTAAG-CCCTGCCCACTTAAC--TCAGAGCCTCTGCTGAATGG---------GGGGGGGCTCTCCT-T-------ATCT-----------------------------------------------CGTGCCATTACAGGAGACCCCAAAACC-TTTC s canFam1.chr18 28805313 555 + 66173745 -GCTCGGCTGAGCCTCCCCGTCCCGTCCTTG-GACACCTCACCTCGA-CTCTGGGAGTCTCCGGAG---CTGGCGCCCCCGACGTGCCAGCCCTGGACACACAGAACCC--AGATGA----GGACTTCAGTTTGTCTAACTGCCTCTCCCACCTAGTCCCCTACTCGAGCTGAGGTCAATGTAAGTCTGTAGCCCCCATTCCAGCACCTAGAA---CCCCATGAAATAACC----------------------------------------TCTGTGCTCGGTGGTCTCCGGGAGCTCAGCCTCT--GCGGCACTAAGCTCACCTGGCCCGCC-GACCCCGGGAATC--GGTCAGAGGCAGGGAGGAGTGACCACCTGGAGCCCCTGAGTCCAGAGGGGCCTGG-------------------------GAATGCGGCCTTCATACTCCATTTTCCAT------GAAGAAT----------------TTACAGATCCCCCTGCACTTGCCTATGGGTCAGCCCCTGCCCACCGCACCTTCAGAGCCCCTGTGGAGCAG---------GAGAGATCCCCTCT-CCCTGCAGGTCCTCAAGGGCCAGCAGCAAAGCGAACCCCACTCCCACCCCATATGACCGTGTTCCATTCCAAGGGACCTGAAGGCC-TTCT a score=16869.0 s hg17.chr17_random 1751601 53 + 2618010 GCCCCTGCTG-TCCTCAAGACAGGCTAAAACCCACACCCAAAGTGGGCTTTCTG s panTro1.chr19 78905685 53 + 82489036 GCCCCTGCTG-TCCTCAAGACAGGCTCAAACCCACACCCAAAGCGGGCTTTCTG s mm5.chr11 118598675 43 + 121648857 A-CCTTGCTG-TTCTCA----AGGCTCAAACCCACATCCACAGTGGGTT----- s canFam1.chr18 28805868 53 + 66173745 G-CCCTGCTATTCCCCAAGTCAGGCTCAAACCTGCATCCAACGAGGGCCTTCTG s galGal2.chrUn 26679713 53 - 165033910 GTCCTCATTG-GCTCCAAGATTAATTAACACCAAGAGGCAAAGAGAGCTTTCTG a score=36951.0 s hg17.chr17_random 1751654 336 + 2618010 GGCCAACC-AACTATGGACACAGTACATAGCCTGCAAAGC-----CTCCTTGGACATCAGAGCTGCCCCAGAACCCCGGCGTTCCCATAGACCCGCAA------ATGGGGTTC--TATAGAGCACCCACTGCATGTCCGACTCTGTCTAAAGACCNGTNGGGTAACACAGAAGCATGAGGCACAGAGGGTCCTCAGGGAGCCTTCAGGGTAATTGACCANACTCACCCCTAAGACAACGGGAGGGAGCACATGGGCTGTGAGTGT---CTTGGCTGCACACAGAG-----------AGGCCTACTGTTCTGCCATTTCCCATCCTCATGTCCTGGAACTTTCcttccatttccntcaattataa s panTro1.chr19 78905738 332 + 82489036 GGCCAACC-AACTATGGACACAGTACATAGCCTGCAAAGC-----CTCCTTGGACATCAGAGCTGCCCCAGAACCCCGGCGTTCACATAGACCCGCAA------ATGGGGGTC--TATAGAGCACCCACTGCATGTCCGGCTCTGTCTAAAGACCG--TGGGTAACACAGAAGCATGAGGCACAGAGGGTCCTCAGGGAGCCTTCAGGGTAATTGACCA-ACTCACCCCTAAGACAACGGGAGGGAGCACATGGGCTGTGAGTGT---CTTGGCTGGACACAGAG-----------AGGCCTACTGTTCTGCCATTTCCCATCCTCATGTCCTGGAACTTTCCTTCCATTTCC-TCAATTATAA s mm5.chr11 118598718 284 + 121648857 ------------GATGACCACAG---ACAGCATACAACACTGAAGCTACCTCACCCTCAGAACTGTCCGAGGAGTC---CCTTGCAGCACATCCATGACAATTTGTGAGGCTCCTTGCAGAG-AGCCAGTGTATGATCGCC-----------------ATGGTAACATAGAAGCA-GAGGCA-AGATCATCTACAGGGAGACTTCAGGACAACTAACCA-ACTCAGCCCCAAGCTAAAGAGAAGCTG----GGGGGTCTGACTGG---GCTGGCTGGGCACAAGA-----------AGACCCA---------------GCATCCGTAT-CCCTGGAAC------ACCATCTCC-TCTGCTGTAA s canFam1.chr18 28805921 267 + 66173745 GGCTATCAGAACTGTGGACACAGTGCCCGGC-TGCAAAGC--------------------TGATGACCCAG---CC----------------------------CCAGGGGTT--CATAAAGCACCCACTGTGTGTTCCAAT----------------CAGGTAATA-AGCAGCAGGAGGGACAGACCATCTTCGGGGAGCTGTCAGGGCAGCTGACTC----------------------AGAGAGGACATGAGCCATGAGAGGGGACAGCGCTGGCCACAGAGACGCAGCACCCAGGCCTCCCACCCCGCCATCTGCCGTCTACACTTCCTTTA---CTTCACCTGTTTCC-TTgactagaa a score=846.0 s hg17.chr17_random 1751990 3 + 2618010 aac s panTro1.chr19 78906070 3 + 82489036 AAC s canFam1.chr18 28806188 3 + 66173745 aac a score=27666.0 s hg17.chr17_random 1751993 313 + 2618010 tggggagcaatggctcacacctgtaatcccagcactttgggaggccgaggcgggtagatcacttgaggtcaggagttcgagaccaccctggccaacatgatgaaactctgtctctactaaaattacaaaaattagccaggtgtggtggcatgcacctgtaatcccagctactcaggaggttgaggcaggagaattgcttgaacccaggaggcagaggttgcagcaagccgagatcaccccactgcattccagcttgggcaataaagcgagactccntctcaaaaaaaaaaaaaaaaaaaa---------aaaaaaaaaaanc s panTro1.chr19 78906073 321 + 82489036 TGgggagcaatggctcacacctgtaatcccagcactttgggaggccgaggcgggcagatcacttgaggtcaggagttcgaggccaccctggccaacatgatgaaactctgtctctactaaaattacaaaaattagccaggtgtggtggcatgcacctgtaatcccagctactcaggaggttgaggcaggagaattgcttgaacccaggaggcagaggttgcagcaagccgagatcaccccactgcattccagcttgggcaacaaagcgagactccatctcaaaaaaaaaaaaacaaaaaacaaacaaaCAAACAAAAAAA-C a score=3697.0 s hg17.chr17_random 1752306 17 + 2618010 gttggcactgacataga s panTro1.chr19 78906394 17 + 82489036 GTTGGCACTGACAtaga s mm5.chr11 118599002 17 + 121648857 GTTGGCATTGACCTGGG a score=35980.0 s hg17.chr17_random 1752323 226 + 2618010 tga-tatctaaggttccttctggctctcaaattgtctgcttctgtaattcAGATCTGAGTGGTGANGGCATGGGTAAGACACT--CCCAGAGTCTCAGGGATG------CCTGGTTAAGGGCTGGAGGGGGCATGGNAAGGCTTCCTGGCATCACCAGGATGCAGCCCAGATACT----------CATGGGCCCTGGCACCTGGAACCATCTGCTCNAAAGGCATCACGTGGCAACCTGATCGTC s panTro1.chr19 78906411 223 + 82489036 tga-tatctaaggttgcttctggctctcaaattgtctgcttctgtaattcAGATCTGAGCGGTGA-GGCATGGGTAAGACACC--CCCAGAGTCTCAGGGATG------CCTGGTTAAGGGCTGGAGGGGACATGG-AAGGCTTCCTGGCATCACCAGGATGCAGCCCAGATGCT----------CATGGGCCCTGGCACCTGGAACCATCTGCTC-AAAGGCATCACGTGGCAACCTGATCATC s mm5.chr11 118599019 193 + 121648857 TAAGCACACCAGGTT-CTCCAGGGTCTAAAGGTGTCTACTTCTATAACTCAGGAACGA--GGTCAAGGCTCTGATGATACACAGGCCCCAAGGCTCAGAA------------GGGTAAGGACTGAAGA---------AGAACTTCCTGGTATCACCAGCCCTTAGCCTGAATGCT----------CAAG---CCCAGCA---GGA------------GAGGACTCCATGTAGCAATCTTATTGTC s canFam1.chr18 28806191 235 + 66173745 tga-tctcaagggctcctcctggctataaaactctctgctcctgtaattcAGGTCTACACTGTGA-GGCATGGATGAGACAAG--CTTGGAG-CTCAGGGTGGGGGGGTCACAGCCAAGGGTCGGAGGGCTCCAGG-ATGGCTTCCTGGCA--ACTGAGGCTCAGCCCCACCCCTGCCCCTGCCCCATAAGCCCGGGAACAAGGGGTGATTT-CTC-AACACCACCATGTGGCAATCTGAATGTT a score=1922.0 s hg17.chr17_random 1752549 10 + 2618010 CCATCATCTT s panTro1.chr19 78906634 10 + 82489036 CCATCATCTT s canFam1.chr18 28806426 10 + 66173745 CTGTCCTCTT a score=1744.0 s hg17.chr17_random 1752559 36 + 2618010 CCAAAGCNCTCAGAANGAGCAGCTGAGNAAGGATCC s panTro1.chr19 78906644 33 + 82489036 CCAAAAC-CTCAGAA-GAGCAGCTGAG-AAGGATCC a score=26008.0 s hg17.chr17_random 1802634 274 + 2618010 tagttgttgatttagttattgatttagttatGAAGCTGTGGATTATAAAAAGGCTGGTTTGAAAGAAGGAAGCCACATTCTGTGGGGGCCTATGACTGACACCCCTGGGGAGAGTTGGGCCAAGGCTAGCTGGCCTGTGAGCCTCAGCAGCACTGCAGGGGGCCTGGGAGGGTGCTGAGCTCTGCCTGGGGTCGGGGGCAGCAGCGGGGACCTGGGGGTGCTGAGCTCTGAGCCTGGGATAGGGGGCACTGCAGGGGCCTGGGGGGTGCTGAGC s panTro1.chr19 1218592 274 - 82489036 tagttgttgatttagttattgatttagttatGAAGCTGTGGATTATAAAAAGGCTGGTTTGAAAGAAGGAAGCCACATTCTGTGGGGGCTTATGACTGACACCCCTGGGGAGAGTTGGGCCAAGGCTAGCTGGCCTGTGAGCCTCAGCAGCACTGCAGGGGGCCTGGGAGGGTGCTGAGCTCTGCCTGGGGTCGGGGGCAGCAGCGGGGACCTGGGGGTGCTGAGCTCTGAGCCTGGGATGGGGGGCACTGCAGGGGTCTGGGGGGTGCTGAGC a score=4464.0 s hg17.chr17_random 1803016 105 + 2618010 GGGGNGCNCNGNNGGGGCNTGNGGGNNNTGNGCTCTNNNCCTGGNNNGGGNNNCNCNGCNGGGNCCTGGGGGTGNTGANCTCTGAGCCTGGGGTGGGGG-CACTGC s panTro1.chr19 1218927 106 - 82489036 GGGGGACACTGCAGGGGCCTGGGGGTGCTGAACTCTGAGCCTGGGGTGGGGGGCACTGCAGGGGCCTGGGGGTGCTGAGCTCTGAGCCTGGGGTGGGGGACACTGC a score=2809.0 s hg17.chr17_random 1803121 14 + 2618010 AGGGGCCTGGGGGT s panTro1.chr19 1219033 14 - 82489036 AGGGGCCTGGGGGT s canFam1.chr18 35730725 14 - 66173745 AGGGGCCGGGGCCT a score=-670.0 s hg17.chr17_random 1803135 6 + 2618010 ---GCTGAG s panTro1.chr19 1219047 6 - 82489036 ---GCTGAG s rn3.chr10 669956 6 - 110733352 ---GCTAGT s canFam1.chr18 35730739 6 - 66173745 CAGGCG--- a score=17454.0 s hg17.chr17_random 1803141 57 + 2618010 CTGTGAGCCT----GGGGTGGGGGCAGCAGCGGGGGTCAGGGG-AGGCCGAACTGAGCC-CCG s panTro1.chr19 1219053 57 - 82489036 CTGTGAGCCT----GGGGTGGGGGCAGCAGCGGGGGTCAGGGG-AGGCCGAACTGAGCC-CCG s mm5.chr11 1321743 63 - 121648857 CTGCGAGCCTGCCAGGAGCAAGGCGGGCTGTGAAGCCCAGAGGCAGGTCAAGCTGTGCCTCCT s rn3.chr10 669962 63 - 110733352 CTGTGAGCCTGCTAGGAGCAGGGCAGGATGTGAAACCCAGAGGCAGGTCAACCTGTGCCTCCT s canFam1.chr18 35730745 54 - 66173745 CCCCGAGCCT----GGGGTGGGGCAGAGTGCCGAGGCAAGGCC-CAGCTGAGCTGTGCC---- a score=-547.0 s hg17.chr17_random 1803198 7 + 2618010 CCGCC-CG s panTro1.chr19 1219110 7 - 82489036 CCGCC-CG s mm5.chr11 1321806 8 - 121648857 CCTCCTCC s rn3.chr10 670025 8 - 110733352 CCTCCTCC s canFam1.chr18 35730799 3 - 66173745 ----C-CC s fr1.chrUn 91782356 7 + 349519338 CCGCG-TG a score=2100.0 s hg17.chr17_random 1803205 1 + 2618010 C s panTro1.chr19 1219117 1 - 82489036 C s mm5.chr11 1321814 1 - 121648857 C s rn3.chr10 670033 1 - 110733352 C s canFam1.chr18 35730802 1 - 66173745 C s galGal2.chr18 4853005 1 + 8919268 C s fr1.chrUn 91782363 1 + 349519338 C a score=258451.0 s hg17.chr17_random 1803206 155 + 2618010 AGGCCCTGTGTTCGTGGTGCAGTGGCTGTTTGACGAGGCACAGCTGACGGTGGACAACGTGCACCTGACGGGGCAGCCGGTGCAGGAGGGCCTGCGGCTGTACATCCAGAACCTCGGCCGCGAGCTGCGCCACACACTCAAGGACGTGCCGTGAG s panTro1.chr19 1219118 155 - 82489036 AGGCCCTGTGTTCGTGGTGCAGTGGCTGTTTGACGAGGCACAGCTGACGGTGGACAACGTGCACCTGACGGGGCAGCCGGTGCAGGAGGGCCTGCGGCTGTACATCCAGAACCTCGGCCGCGAGCTGCGCCACACGCTCAAGGACGTGCCGTGAG s mm5.chr11 1321815 155 - 121648857 AGGTCCGGTGTTCGTGGTACAGTGGCTTTTCGATGAGGCCCAGCTTACCGTGGATAACGTGCATCTCACCGGACAGCCGGTTCAGGAAGGCCAGTGGCTATACATCCAGAATCTGGGCCGAGAACTGCGTGGTACACTCAAGGATGTGCAGTGAG s rn3.chr10 670034 155 - 110733352 AGGTCCAGTGTTCGTAGTTCAGTGGCTTTTCGATGAGGCTCAGCTGACCGTGGATAACGTGCATCTCACTGGGCAGCCGGTTCAGGAGGGCCAGTGGCTGTACATCCAGAATCTGGGCCGAGAACTGCGTGGCACACTCAAGGATGTGCAGTGAG s canFam1.chr18 35730803 155 - 66173745 AGGCCCGGTGTTTGTGGTGCAGTGGCTGTTCGATGAGGCTCAGCTGACCGTGGACAACGTGCACCTCACGGGACAGCCTGTGCAGGAGGGCCAGTGGCTGTACATCCAGAACCTGGGCCGTGAGCTGCGGAACACGCTCAAGGATGTGCCGTGAG s galGal2.chr18 4853006 155 + 8919268 AGGTCCGGTCTTTGTTGTCCAGTGGCTGTTTGATGAGGCCCAGCTTACTGTGGACAATGTACACCTCACCGGGCAGCCTGTTCAGGAGGGGCAGTGGCTGTACATCCAGAATCTGGGTAGGGAGCTGAGAAACACCTTGAAGGACGTGACGTAAG s fr1.chrUn 91782364 155 + 349519338 AGGTCCTGTGTTTGTGGTCCAGTGGCTGTTCGATGAGGCCCAGCTGACGGTCGATAACATCCAGCTGACAGGTCAGCCTGTGCAGGAAGGACAGTGGCGCTACATCCAGAACTTAGGCATCGAGCTGAGGAACACGCTCAAGGATGTCCCGTAAG s danRer1.chrUn 48885035 155 - 367113659 AGCTCCGCTGTTTGTGGTGCAGTGGCTGTTTGACGAGGAACAGTTACGAGTGGAGAACATTTATATGGGCAGCCAGTCTCTGTCAGAGCAGCAGTGGACCTACATGCAGAACCTGGGGAAAGAGTTAAAAAACTCTCTCAAAGACGTGACGTGAG a score=91.0 s hg17.chr17_random 1803361 1 + 2618010 T s danRer1.chrUn 48885190 1 - 367113659 T a score=1365.0 s hg17.chr17_random 1803361 1 + 2618010 T s panTro1.chr19 1219273 1 - 82489036 T s mm5.chr11 1321970 1 - 121648857 T s rn3.chr10 670189 1 - 110733352 T s canFam1.chr18 35730958 1 - 66173745 T s galGal2.chr18 4853161 1 + 8919268 T a score=1600.0 s hg17.chr17_random 1803362 2 + 2618010 GT s panTro1.chr19 1219274 2 - 82489036 GT s mm5.chr11 1321971 2 - 121648857 GT s rn3.chr10 670190 2 - 110733352 GT s canFam1.chr18 35730959 2 - 66173745 GT s danRer1.chrUn 48885191 2 - 367113659 AC a score=2386.0 s hg17.chr17_random 1803364 3 + 2618010 GTG s panTro1.chr19 1219276 3 - 82489036 GTG s mm5.chr11 1321973 3 - 121648857 GTG s rn3.chr10 670192 3 - 110733352 GTG s danRer1.chrUn 48885193 3 - 367113659 ATG a score=160.0 s hg17.chr17_random 1803364 3 + 2618010 GTG s danRer1.chrUn 48885193 3 - 367113659 ATG a score=0.0 s hg17.chr17_random 1803367 2 + 2618010 GG a score=200.0 s hg17.chr17_random 1803367 2 + 2618010 GG s panTro1.chr19 1219279 2 - 82489036 GG a score=3669.0 s hg17.chr17_random 1803369 18 + 2618010 CCCCGGGAGCCCCACGCC s panTro1.chr19 1219281 18 - 82489036 CCCCGGGAGCCCCACGCC s mm5.chr11 1321976 15 - 121648857 -CACGGGA--CCTGGGCT s canFam1.chr18 35730961 18 - 66173745 CCTGGGGACCCCCGCCCC a score=3874.0 s hg17.chr17_random 1803387 39 + 2618010 GGGTAGCTCCCTCCTTATTTAAAAATAGAGGTCCTGA-GA s panTro1.chr19 1219299 40 - 82489036 GGGTAGCTCCCTCCTTATTTAAAAATAGAGGTCCTGAGGA s mm5.chr11 1321991 35 - 121648857 GGGTAG----CTTATGAGGTAAAGATACGGGTCTCGGGG- a score=29125.0 s hg17.chr17_random 1803426 340 + 2618010 AAACAAAAGAAGAA-ANACCNNNACAAAAAAAAATAGAGGTCTTGTAggccgggcg-cagtgactcacacctataatcccagcactttgggaggcccatgcaggtggatcacctgaggtcaggagtgcgagaccagcctggccaacatggcaaaaccctatctccacaaaatatgcaaaaaattagtccggtgtagtggcaggcgcctgtaatcccagctactcaagaggctgaggcaggagaatcacttgaactgggaggtggaggttgcagtgagctgagatngtgccactgcactccagcctgggtgacggagtaagactctgtctcaaaaaaTAC------------------ATA s panTro1.chr19 1219339 360 - 82489036 AAACAAAAGAAGAACAAACCAGAACAAAAAAAAATAGAGCTCTTGTAggccgggcgtcagtgactcacacctataatcccagcactttgggaggcccatgcaggtggatcacctgaggtcaggagtgcgagaccagcctggccgacatggcaaaaccctatctccacaaaatatgcaaaaaattagtccggtgtagtggcaggggcctgtaatcccagctactcaagaggctgaggcaggagaatcacttgaactgggaggtggaggttgcagtgagctgagattgtgccactgcactccagcctgggtgacggagtaagactctgtctcaaaaaatacatatatatatatatatatata a score=4163.0 s hg17.chr17_random 1803766 71 + 2618010 TATagagagagag---agaaagagagngngnagagagagagagagagagagaga--gagaTCGAGATCGGTCTTGg s panTro1.chr19 1219699 58 - 82489036 tatagagagagag------------------agagagagagagagagagagagaTCGAGATCGAGATCGGTCTTGg s mm5.chr11 1322603 65 - 121648857 --TAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG--AAGAAGAATATGG------- a score=25678.0 s hg17.chr17_random 1803837 316 + 2618010 gcctggcacactggctcacgcctataatcccacccctttgggaggccgaggcagc-agga-ttgct-ggaggccaggagtctaagaccagccagggcaacatggtgaaaccgtgtctctactgcacatacagaaattatccaggcatggtggcatcacctgtaatcccagctactcangaggctgaggcaggaggatcccttgagcccaggagttcaaggttacagtgagctaaccttgcctgtgggaggcaagcaagcttcgattgtaccactacactccagctggggcgatagagcca-----gaccccgactcaaaataaa s panTro1.chr19 1219757 317 - 82489036 gcctggcacactggctcacgcctataatcccacccctttgggaggccgaggcagcaaggatttgctgggaggccaggagtccaagaccagctggggcaacatggtaaaaccgtgtctctactgcacatacaaaaattatccaggcatggtggcatcacctgtaatcccagctactcaggaggctgaggcaggaggatcccttgagcccaggagttcaaggttacagtgagctaaccttgcctgtgggaggcaagcaaccttcgattgtaccactacactccacctgggccgatagagccaaagggga-------tcaaaataaa a score=219.0 s hg17.chr17_random 1804169 6 + 2618010 AGATAG s rn3.chr10 670554 6 - 110733352 AGAAAA a score=273.0 s hg17.chr17_random 1804175 1 + 2618010 T s mm5.chr11 1322685 1 - 121648857 T s rn3.chr10 670560 1 - 110733352 T a score=21045.0 s hg17.chr17_random 1804176 262 + 2618010 AGCAGAATATTTGCCTGTCTAGGGCAGCCTCTTGCCATCACCTGGGAGGGCCTGCCTGGAAGAGNGTGGACTCTGAGCAGGGATTTGAGGCACAAAGCGATAAGGGTCAGCCGGGAGCTGGCCA---ACTAGGGGGAGGCCCGGGCCAGAGGAACAGCTGGC-AGCCATAGCAACAG-GAAGGGGTGATGGCCAGG---------------CGGGGGACAGCTCTAGGG----------------GAGTGGGGGTGGAAAAGGGGCTGAGGGGGTAAGGAGCNTCACAAGCC-ACTGTC s mm5.chr11 1322686 218 - 121648857 AACATAGAATTAACATGTCT----------CCTGCCACTGCCTAGCAGACTCCAGCTGGATGAG-GTATACATGCAACTGGTTAGAGAAGCCCAAAGGGGCAAGGGTCAGCATGGAGCATGTGGG-TACTGGAGCCAAGGCCAGGGCAGTTGAGAAGCTGGCCAGACACAGCAAAAG-GAAGGGCTGCTTATC---------------------TGGAAAAGTTTATGC-------------------TGTGGATAGGATTTGAGCTGA----------------------------TT s rn3.chr10 670561 224 - 110733352 GTCAGACGGTTCATGTGCTCAAGATAGCCTCCTGCCACTGCCTAGCAGACTCTGGCTGGATGAA-GTGTACATAAAACAGGTTTGGGAAGCCCAAAG-GGTAAGGGTCAGCATGGAGCATGTGGG-TACTGGAGCCAAGGCCAGGGCAGATGAGAAGCTGGCCAGACACAACAAAAG-CAAGGGCTGCTTATC---------------------TGGAAAAGGCTATAC-------------------TGTGGGA----CTCAGGGTGA---------------------------TTT s canFam1.chr18 35731559 296 - 66173745 AGCAAAATACTCACACATCCGGGTCAACCTGCCGCCACTGCCCAGCCGGCCCTCCCTGGA-GGG-GTGGACTCTGAGCAGGGTCTGGAGGCAGGAAGAGACGAGCGTGAGCAGGGAGCACGTGGGTTGCTGGGGACAAGGCCTGGTCCAGAGGGCAGCTGGCTAGGCGCAGCCATGGAGGGGGGATGGGAGCCAGGGACAGGAGAGGTGCCCGGGGGAGGGGGCTGGAGCTACTGTGACCTGCGGGCACGGGGGTGGG-GTGGGGAAGAGGCCCAGGGGATCGCTGCAAGCCTGCTGTC a score=4157.0 s hg17.chr17_random 1804438 10 + 2618010 TCCTCTCCAA s mm5.chr11 1322904 10 - 121648857 CTCTCCCCAC s rn3.chr10 670785 10 - 110733352 TTCTCCCTAC s canFam1.chr18 35731855 10 - 66173745 TCCTCCCCAA s galGal2.chr18 4853752 10 + 8919268 TTTTCTCCTT a score=91.0 s hg17.chr17_random 1804447 1 + 2618010 A s danRer1.chr24 11445600 1 - 23152154 A a score=78100.0 s hg17.chr17_random 1804448 56 + 2618010 CAGGGCCAGCTTTGCCCCCGCCTGCCTCTCCCATGAGATCATCATCCGGAGGTCAG s mm5.chr11 1322914 56 - 121648857 CAGGGCCAGCTTTGCCCCCGCCTGCCTGTCTCATGAGATCATCATACGGAGGTCAG s rn3.chr10 670795 56 - 110733352 CAGGGCCAGCTTTGCCCCCGCCTGCCTGTCCCATGAGATCATCATACGGAGGTCAG s canFam1.chr18 35731865 56 - 66173745 CAGGGCCAGCTTCGCCCCCGCCTGCCTCTCCCATGAGATCATCATCCGGAGGTCAG s galGal2.chr18 4853762 56 + 8919268 TAGTGCTAGCTTTGCTCCTGCCTGTTTGTCTCATGAGATCATTACACGCAAGTGAG s fr1.chrUn 91782582 56 + 349519338 CAGAGCCATGTTTGCTCCGGCCTGCCTCTCTCATGAAGTTATCACCAGAAAGTAAG s danRer1.chr24 11445601 56 - 23152154 CAGGGCCATGTTTGCTCCCGCCTGTCTCTCTCACGAGATCATCACTAGAAGGTGAG a score=1365.0 s hg17.chr17_random 1804504 1 + 2618010 T s mm5.chr11 1322970 1 - 121648857 T s rn3.chr10 670851 1 - 110733352 T s canFam1.chr18 35731921 1 - 66173745 T s galGal2.chr18 4853818 1 + 8919268 T s fr1.chrUn 91782638 1 + 349519338 T a score=476.0 s hg17.chr17_random 1804505 1 + 2618010 G s mm5.chr11 1322971 1 - 121648857 A s rn3.chr10 670852 1 - 110733352 G s canFam1.chr18 35731922 1 - 66173745 G s galGal2.chr18 4853819 1 + 8919268 G a score=4999.0 s hg17.chr17_random 1804506 117 + 2618010 TCCCT------GCTCCGGGCAGCTTGCGTCCATGACATCAACTTCAAAAGTCCACATGCTCCCC----AACCGCACTTGGCCTCCCATGGGCCTCTTCTTGGCGCTTCTAGGGGTGGGATTTCCTTA s mm5.chr11 1322972 125 - 121648857 TCTCC-CACGGGTTCTAGGTAGCTTACATCTGTAGGATTAATTCCATATGCCTTTAAGCCCTTCCCAAAGCAGTAGACGCCTTTCCGTGAAACCCTTCC-AGAGGTTCCATATAAAGTGTTTCTTTC s rn3.chr10 670853 119 - 110733352 ACTCC-CACAGGTTCTA------TTACCTCTGTAGTATTAATTCCATAGGCCTTCAAGCACCTCCCAAACCAGTAGATGCCTTTCCATGAGATCCTTCT-GGAGACTCTATATAGTATGTTTTTCTT s canFam1.chr18 35731923 110 - 66173745 TTCCTCCCCATGCCCGGGATAGATGGCATCT---GGGTCTCCTGCAAACACCCACGGCCCC-------ACCCCCACTTGCTCGTC-----ACCGCTTCC--CCAGCTCTGTAGAAAGGGCTTCCTTC a score=6967.0 s hg17.chr17_random 1804623 31 + 2618010 TAGGGGTGCCAGAGCCACTTGTACCAACAGC s panTro1.chr19 1220540 30 - 82489036 TAGGGGTGCCAGAGCCACTTGTACCA-CAGC s mm5.chr11 1323097 30 - 121648857 TGGGCCCTCCAAAGCCAC-TACACCAACGGT s rn3.chr10 670974 26 - 110733352 TGGGCCCTCCAACCCTAC-TACA----CAGC s canFam1.chr18 35732033 31 - 66173745 CAGGGCTTTCAGTGCCAATTGTACAACCAGC a score=-234.0 s hg17.chr17_random 1804654 4 + 2618010 --TGTA s panTro1.chr19 1220570 4 - 82489036 --TGTA s rn3.chr10 671000 4 - 110733352 --TGTA s canFam1.chr18 35732064 4 - 66173745 CACG-- a score=1660.0 s hg17.chr17_random 1804658 10 + 2618010 TGGCAAGAAT s panTro1.chr19 1220574 10 - 82489036 TGGCAAGAAT s canFam1.chr18 35732068 10 - 66173745 TGGCTGAGAT a score=62007.0 s hg17.chr17_random 1804668 741 + 2618010 TAAGACT---CAg------gctgggtgcggtggctcacgcctgtaatcccagcactttgggaggttgaggcaggtggatcacctgaggtcaggagttcgacaccagcctggccaatatagtgaaaccctgtctctagtaaaaatacaattagctgggcgtggtggcgggtgcctgtaatccagctactccggaggctgaggcaggagaatcgcttgaacctgggagacagaggttatggtgagtcgagattgcaacattgcactccatcctgggggcaacaagagtgaaactccatctcaaaaaaaaaagaanaaaaaaaaaagaCTCAGGCTGAGCAgtggctcacacctgtaatcccagctactcaggaggctgaggtgggaggatcacttgaactcaggaggttgaggctgcagtgagcagtgatcacaccactgcattctagcctgacaggcagagggagaccttgtctcaaaaaacaaaacaaaacaaaa------aaaCCCAggctagatacggtggctcacgcctgttatctcagcactttgggaggccaatgggggcagatcacctgacgtcagttcgagaccagcttggccaacatagtgaaaccccatctctactgaaaatacaaaaaattagccagtctcggtggcacacgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttgaacccngggaggcggaggctgcagtgagccgagatcctgccaTGGCTG s panTro1.chr19 1220584 740 - 82489036 T----CTATTCAGCCCTCggctgggtgcggtggctcacgcctgtaatcttaacactttgggtggttgaggcaggtggatcacctgaggtcaggagttcgacaccagcctggccaatatagtgaaaccctgtctctagtaaaaatacaattagctgggcatggtggcgggggcctgtaatccagctacttgggaggctgaggcaggagaatcgcttgaacccgggagacggaggttacggtgagccgagattgcaacattgcactccatcctgggggcaacaagagtgaaactccatctc----------gaaaaaaaaaaaaaGACTCAGGCTGAGCAgtggctcatacctgtaatcccagctactcaggaggctgaggtgggaggatcacttgaactcaggaggttgaggctgcagtgagcagtgatcacaccactgcattctagcctgagaggcagagggagaccttgtctcaaaaaacaaaacaaaacaaaacaaaaaaaacCCAggctagatacgatggctcacgcctgttatctcagcactttgggaggccgatgggggcagatcacctgacgtcagttcgagaccagcttggccaacatagtgaaaccccatctctactgaaaatacaataa-ttagccagttgcggtggcacacgcctgtaaccccagctactcgggaggctgaggcaggaaaatcgcttgaacc-tgggaggcggaggctgcagtgaaccgagatcctgccaTGGCTG a score=2042.0 s hg17.chr17_random 1805409 35 + 2618010 GTCTCA--AAAAAAAAAACAGCTGCCTCAGTGTTGAT s panTro1.chr19 1221324 37 - 82489036 GTCTCACAAAAAAAAAAACAGCTGCCTCAGTGTTGAT s rn3.chr10 671004 15 - 110733352 GCCCCA--AACAA--------------------TGAC a score=568.0 s hg17.chr17_random 1805444 15 + 2618010 GCCACTCCGCACATG s panTro1.chr19 1221361 15 - 82489036 GCCACTCCACACATG s rn3.chr10 671019 11 - 110733352 ACCA----ACGGACT s canFam1.chr18 35732100 11 - 66173745 GCCACCCCGC----G a score=3003.0 s hg17.chr17_random 1805459 5 + 2618010 TGACC s panTro1.chr19 1221376 5 - 82489036 TGACC s rn3.chr10 671030 5 - 110733352 TGACA s canFam1.chr18 35732111 5 - 66173745 TGACC s fr1.chrUn 91782679 5 + 349519338 TAACA a score=4140.0 s hg17.chr17_random 1805464 9 + 2618010 CCCTCCCCC s panTro1.chr19 1221381 9 - 82489036 CCCCCCCCC s mm5.chr11 1323178 9 - 121648857 CCCACCCCT s rn3.chr10 671036 9 - 110733352 CCCACACCT s canFam1.chr18 35732116 6 - 66173745 ---CCACCT s fr1.chrUn 91782684 9 + 349519338 GCGCCCTCT a score=816.0 s hg17.chr17_random 1805473 1 + 2618010 G s panTro1.chr19 1221394 1 - 82489036 G s mm5.chr11 1323187 1 - 121648857 G s rn3.chr10 671045 1 - 110733352 G s canFam1.chr18 35732122 1 - 66173745 G s galGal2.chr18 4853950 1 + 8919268 G s fr1.chrUn 91782693 1 + 349519338 T a score=843.0 s hg17.chr17_random 1805474 8 + 2618010 GTTTTCC-T s panTro1.chr19 1221395 8 - 82489036 GTTTTCC-T s mm5.chr11 1323188 8 - 121648857 GGTTCTC-T s rn3.chr10 671046 8 - 110733352 GGTTCTT-T s canFam1.chr18 35732123 9 - 66173745 GATTTCTGT s galGal2.chr18 4853951 8 + 8919268 GTTTGTC-T s fr1.chrUn 91782694 8 + 349519338 GTGGTGC-G s danRer1.chr24 11446081 8 - 23152154 GTGTGTT-T a score=563986.0 s hg17.chr17_random 1805482 296 + 2618010 CTGCAGCCACTGGACGGATGTCCAGGTGAAGGGGACGTCGCTGCCCCGAGCACTGCACTGCTGGGACAGGAGCCTCCATGACAGCCACAAGGCCAGCAAGACCCCCCTCAAGGGCTGCCCCGTCCACCTGGTGGACAGCTGCCCCTGGCCCCACTGCAACCCCTCATGCCCCACCGTCCGAGACCAGTTCACGGGGCAAGAGATGAACGTGGCCCAGTTCCTCATGCACATGGGCTTCGACATGCAGACGGTGGCCCAGCCGCAGGGACTGGAGCCCAGTGAGCTGCTGGGGATGC s panTro1.chr19 1221403 296 - 82489036 CTGCAGCCACTGGACGGATGTCCAGGTGAAGGGGAGGTGGCTGCCCCGAGCACTGCACTGCTGGGACAGGAGCCTCCATGACAGCCACAAGGGCAGCAAGACCCCCCTCAAGGGCTGCCCCGTCCACCTGGTGGACAGCTGCCCCTGGGCCCACTGCAACCCCTCATGCCCCACCGTCCGAGACCAGTTCACGGGGCAAGAGATGAACGTGGCCCAGTTCCTCATGCACATGGGCTTCGACATGCAGACCGTGGCCCAGCCGCAAGGACTGGAGCCCATTGAGCTGCTGGGGATGC s mm5.chr11 1323196 296 - 121648857 CTACAGCTATTGGACGGACGTCCAGGTGAAGGGGACCTCACTGCCCAGGGCACTGCACTGCTGGGACCGGAGCTTCCATGACAGCCATAAGGCCAGCAAAACCCCCATGAAGGGCTGCCCTTTCCACCTGGTAGACAGCTGCCCCTGGCCCCACTGCAATCCCTCATGCCCTACCATCCGGGACCAGTTCACAGGGCAAGAGATGAACGTGGCACAGTTCCTTATGCATATGGGCTTCGATGTGCAGACGGTGGCTCAGCAGCAGGGGATGGAGCCCAGCAAGCTGCTAGGGATGC s rn3.chr10 671054 296 - 110733352 CTACAGCTATTGGACAGATGTCCAGGTGAAGGGGACCTCACTGCCCCGGGCACTGCACTGCTGGGACCGGAGCTTCCATGACAGCCATAAGGCCAGCAAAACGCCCATGAAGGGCTGCCCTTTCCACCTGGTAGACAGCTGTCCCTGGCCCCACTGCAATCCCTCATGCCCTACCATCCGGGACCAGTTCACAGGCCAAGAGATGAACGTGGCACAGTTCCTTATGCACATGGGCTTCGATGTGCAGACGGTGGCCCAACAGCAGGGGATGGAGCCCAGCAAACTGCTAGGGATAC s canFam1.chr18 35732132 296 - 66173745 CTGCAGCCACTGGACGGACGTCCAGGTGAAGGGGACCTCGCTGCCCCGGGCGCTGCACTGCTGGGACAGAAGCCTGCATGACGGCCACAAGGCCAGCAAGGCCCCGCTGAAGGGCTGCCCCGTCCACCTGGTGGACAGCTGCCCCTGGCCCCACTGCAACCCCTCTTGCCCCACCATCCGGGACCAGTTCACCGGGCAGGAGATGAACGTGGCCCAGTTCCTCATGCACATGGGCTTCGACGTGCAGACCGTGGCGCAGCAGCAGGGCCTGGAGCCCAGTACGCTGCTGGGGATGC s galGal2.chr18 4853959 296 + 8919268 TTTCAGCCATTGGACAGACATCCAGGTGAAGGGGACATCGTTACCCCGCGCCCTGCACTGTTGGGATCGGAGCCTACATGAGAGCAACAAAAATGGGAAGGCCCCTCTGAAAGGTTGCCCAATTCATCTGATTGACAGCTGTCCATGGCCCCACTGCAACCCCTCGTGCCCCACTATCAGGGACCAGTTCACAGGGCAGGAGATGAACGTCATCCAGTTCCTCATGCACATGGGTTTTGATGTACAGAAGATGGCACAGCAACAGGGCCTGGAGCCCAGTAAACTCCTGGGGATGC s fr1.chrUn 91782702 293 + 349519338 TTTTAGTTACTGGATCGACGTGCAGGTGAAAGGCACCTCCCTGCCGCGGGCACTGCACTGCTGGGACCGCAGCCTCCACGACAACCGGAA---CAACAAGGCCCCCCCCAAAGGCTGCCCCGTCCATTTGATTGACAGCTGCCCGTGGCCGCACTGCAACCCCACCTGCCCCACCATCCGGGACCAGTTCACGGGGCAGGAGATGAACGTCATTCAGTTCCTCATGCACATGGGCTTTGATGTGCAGAAGATGGCCCAGCAGCAGGGCATGGACCCCAGCAGGCTACTGGGCATGC s danRer1.chrNA 233136157 296 + 390413307 CTGTAGCTACTGGACCGATGTTCAAGTCAAAGGCACATCTCTACCGCGAGCGCTGCACTGCTGGGACCGCAGTCTACAAGACACCAGCAGAAATAACAAATCGCCCCCCAAAGGCTGTCCCGTGCACTTGATCGACAGCTGCCCGTGGCCTCACTGCAACCCCACATGCCCAACCATCCGGGATCAGTCTACAGGGCAGGAGATGAACGTCATCCAGTTCCTCATGCACATGGGCTTCGATGTCCAGAAGATGGCCCACCAGCAGGGAATGGACCCGAGTAAACTCCTGGGCATGC a score=2681.0 s hg17.chr17_random 1805778 21 + 2618010 TGAGCAACGGAANGCTAG----------GCA s mm5.chr11 1323492 13 - 121648857 TGAGTAATGGGAA------------------ s rn3.chr10 671350 19 - 110733352 TGAGTAGCGGAAA--CTA----------GAT s canFam1.chr18 35732428 20 - 66173745 TGAGCAGCGGGAG-CTAG----------GGG s galGal2.chr18 4854255 20 + 8919268 TCAGCAGTGGTAA-CTAG----------GAG s fr1.chrUn 91782995 30 + 349519338 TCAGCAGCGGCAG-CTAAACCCACACGCGGT s danRer1.chrNA 233136453 20 + 390413307 TCAGCAGTGGCAG-CTAA----------GCA a score=-41783.0 s hg17.chr17_random 1805799 73 + 2618010 G---ACT---------------GTCTG--GAGGAGGAGCCGGCACTG-AGGGGCCCAGACACCCGCTGCCCCAGTGCCA------------------CCTCACCCCCCACCA----- s mm5.chr11 1323505 62 - 121648857 ------------------------CTA--GAGGGTG---TGGTACTG-AGGGGCTGGCCCACTCACTGCCCCAGGGTGA-------------------CTCA-CCTCGACTT----- s rn3.chr10 671369 71 - 110733352 G---TCT---------------GCCTGCAGAGGAGG---TAGTAATGAAGGGGCCGGTCCACCTACTGTCCCAGGGTGA-------------------CTCA-CCTCTACTT----- s canFam1.chr18 35732448 57 - 66173745 T---CCC---------------GCCCC--GGGGAGC---TGGCGCTG---GGGCCGGCCACGCCATGGGC----------------------------TCCA-CTGCCCCTC----- s galGal2.chr18 4854275 86 + 8919268 GGGATCTTCCCAAGGGCAGAGAGATTA--GATCAGG---AGGAGACT-CGGAGCCCTTCTCCCACTCTCTCTAATCTTC-------------------CTTA-CGCTCATGC----- s fr1.chrUn 91783025 91 + 349519338 G---TCTCCAA-----------GCTAC--GCCAGGC---CAGTTCCT-CATGCCTGATACCTCCAAGTACCCATCTCCATCACTACTTCTACCTTTTTGTCA-CTTCCTCTC----- s danRer1.chr24 11446396 65 - 23152154 -----------------------ACTC--ACAGACA---TGGCAATC-GGGCATCGAACCAAACATG--CTCAGTAACA--------------------CCA-CCTATACAACACAG a score=-2168.0 s hg17.chr17_random 1805872 1 + 2618010 G- s mm5.chr11 1323567 1 - 121648857 C- s rn3.chr10 671440 1 - 110733352 C- s canFam1.chr18 35732505 1 - 66173745 C- s galGal2.chr18 4854361 2 + 8919268 AG a score=260.0 s hg17.chr17_random 1805872 4 + 2618010 GCAG s danRer1.chr24 11446461 4 - 23152154 ACAG a score=2097.0 s hg17.chr17_random 1805873 3 + 2618010 CAG s mm5.chr11 1323568 3 - 121648857 TAG s rn3.chr10 671441 3 - 110733352 TAG s canFam1.chr18 35732506 3 - 66173745 TAG s danRer1.chr24 11446462 3 - 23152154 CAG a score=-29434.0 s hg17.chr17_random 1805876 82 + 2618010 ------------------GCCCTCCCGTCTCTTCG--------GGACAGGGC-----CCCAGCCGTCCCCCCTGT--CTGGGTCTGCCC---ACTGCCCTCCTGCCCCGGCTTTCCCT s mm5.chr11 1323571 50 - 121648857 ------------------GTACTTCTTCCTCTCC------------CAGGG---------------CCCACCTGG--CTGTGGATGTCTG--ACTGCCT------------------- s rn3.chr10 671444 56 - 110733352 ------------------GCTCTTCTG-CTCTCC------------CAGGA---------------CCCACCTGA--GTATGGATGCCTG--ACTGTCT------------ATACCCT s canFam1.chr18 35732509 51 - 66173745 ------------------GAC----------------------GGACGGGGC--------------CCCGGCTGGCCCCACAGCTGCCTT-CACTGCCCCTCTACC------------ s fr1.chrUn 91783117 92 + 349519338 ------------------GACCTCTTTTTTTATTGAATCAAACTCACAGATTTGTTTCACAAGTGGCTCCACTGT--CTCAAGCTGCCCAGTACCGTTGTTCTGCACCTGCC------ s danRer1.chr24 11446465 100 - 23152154 CGCTTTATGATGGGCATTAAACGCATCACTTATTG-----------GGGGGTGGGCTTACAATCATCCCAACGGT--GCGGGC---CCTT--ACAATCATCCTAACTCCACCCCCCCT a score=-6268.0 s hg17.chr17_random 1805958 56 + 2618010 GCCCCTCTCCCACA---------GCCCAGCCAGAGA-----------------CAAGGGACCTGCTGTCATCCCCATCTGTG s mm5.chr11 1323621 70 - 121648857 -ATTCTCTCCCACT---------GCCTGGCTAGAGGAGTGGTCTGCCCTGAGTCCAGGGACC--CTTCCCACCCCGTATCTG s rn3.chr10 671500 63 - 110733352 CCCTCTGCCCAGCTAGAAGAGTGGTCTGCCCTGAGC-----------------CCAGGGACC--CTTCCTACCCCGTATCTG s canFam1.chr18 35732560 37 - 66173745 -ACTGCCACCTGGA---------GCCCAGCCACAGC------------------------CC-----CCAGCCCTG------ s fr1.chrUn 91783209 63 + 349519338 -ATTGTCTCATATTAACTGCGGTGCTTAACCGAATC-----------------CCCGGAAGG-GCTTTCGGATCCATCCACA a score=-131.0 s hg17.chr17_random 1806014 3 + 2618010 GCC s mm5.chr11 1323691 3 - 121648857 TTT s rn3.chr10 671563 3 - 110733352 TTT s fr1.chrUn 91783272 3 + 349519338 GCC a score=300.0 s hg17.chr17_random 1806014 3 + 2618010 GCC s fr1.chrUn 91783272 3 + 349519338 GCC a score=-1319.0 s hg17.chr17_random 1806017 4 + 2618010 TGGG-- s mm5.chr11 1323694 4 - 121648857 CCCT-- s rn3.chr10 671566 6 - 110733352 CCCTAG a score=0.0 s hg17.chr17_random 1806017 8 + 2618010 TGGGGGTC a score=38.0 s hg17.chr17_random 1806021 3 + 2618010 GGT s mm5.chr11 1323698 3 - 121648857 AGC a score=0.0 s hg17.chr17_random 1806021 3 + 2618010 GGT a score=300.0 s hg17.chr17_random 1806024 1 + 2618010 C s panTro1.chr19_random 56451726 1 + 57627672 C s mm5.chr11 1323701 1 - 121648857 C a score=59375.0 s hg17.chr17_random 1806025 146 + 2618010 CTTCCTGACAA---CGAGGGGGTAGCCAGAAGAGAA-----GCACTGGATTCCT--CAGTCCACCAGCTCAGACAG--CACC----CACCGGCCCC-ACCCATCAAGCCCttttatattattttataaagtgac-ttttttattactttaantttttaaaaaaa- s panTro1.chr19_random 56451727 147 + 57627672 CTTCCCGACGA---CGAGGGGGTAGCCAGAAGAGAA-----GCACTGGA--CCTTACAGTCCACCAGCTCAGACAGCCCCCC----CCCCGGCCCC-ACCCTTCAAGCCCttttatattattttataaagtgac-ttttttattactttaa-tttttaaaaaaa- s mm5.chr11 1323702 153 - 121648857 CCCCCAGCCCAGCTTGGGGAGGGAGCCAGAAGCAAAG-CGTGCACTGGACCCCT--GAGCCAGTCAGCGCAGACAG-TCCCT----CCCAGCCCCC-ACTGATCATGTTCGTTTGTATTATTTTATAAAGTGAC-TTTTTTATTACCTTAA-TTTTTAAAAAAA- s rn3.chr10 671572 155 - 110733352 CCCCCAGGCCAGC-TTAGGGGCAAGCCGGAAGCAAAGCCAAGCACTGGATTCCT--GAGCCTATCAGCTCAGACAG-TCCCT----CCTAGCCCCCAACTGATCCTGTTCTTTTGTATTATTTTATAAAGTGACTTTTTTTATTACTTTAA-TTTTTAAAAGAA- s canFam1.chr18 35732597 142 - 66173745 CCTCCTGCCCA---CGCTGGGGAGCCCCAA-----------GCACTGGG--CTC--CAGCCCACCAGCCCGGA-AG-TCCCCCGAGCCCAGCCCCA-GCCTCTCTTGGCGTTTTGTATTATTTTATAAAGTGAC-ttttttattactttaa-ttttttttaaaaG a score=336.0 s hg17.chr17_random 1806171 4 + 2618010 GGAA s panTro1.chr19_random 56451874 4 + 57627672 GGAA s mm5.chr11 1323857 3 - 121648857 GGA- s canFam1.chr18 35732739 4 - 66173745 GAAA a score=-2185.0 s hg17.chr17_random 1806175 53 + 2618010 NNNANNA-----------ANNTNNNNNNNNNNNNNNNNTNNTGTNNNNNNNTNNAANNGATTTT s panTro1.chr19_random 56451878 50 + 57627672 AAGAATATATGATGAATGATAT--------------TGTTTTGTAACTTTTTAAAAATGATTTT a score=9475.0 s hg17.chr17_random 1806228 43 + 2618010 AAAGAGACAA-AAAAGAACCTCACCCTGCCCGCGTGTTTATTTG s panTro1.chr19_random 56451928 43 + 57627672 AAAAAGACAA-AAAAGAATCTCACCCTGCCGGCGTGTTTATTTG s canFam1.chr18 35732806 44 - 66173745 AAAAAGACAACAAAAGAGCCTCACCCTGCAGACGTGTTTATTTG a score=4994.0 s hg17.chr17_random 1806271 62 + 2618010 CTTCACACTtcccctcctcctctccctcccctccctcctctccctccct-----tcctcctctccct s panTro1.chr19_random 56451971 67 + 57627672 CTTCACACCTcccctcctcctctccctcccctccctactctccctccctctctcccctcctctccct a score=85176.0 s hg17.chr17_random 1806938 990 + 2618010 ccaccacgctcagctaatttttgtatttttagtagagatggggtttcgccatgttggccaggctggtctcaaannnntgacctcagntgatccaccngcctcagnctcccaaagtgctggaattacagatgtgagccaccnacgcccACNTCNCNTAGTNTTNAAAACTCTTTATCAATCCAGAACACTTCCTACCCAGCTGACAATTCCTTAAACATTTGCATTTTATTTCTTTCTACTAGGTCATTCCTGCACATGGTTCAAAATTCAAAAGATGCAGAAGATATGAGGGCGAATGCCCANTTTCCCCCACAGCTCAGGTTCCCTGGCTCTGCTTCCAAGGGCAAACAGTGTTACCTTGTNGGATATTCCCAGAGATCATTTCGTGAAAATTCCGGTAAACAGGTGCACACGTTGACATACATGCATTTTTTTCTTTTACACAGATGGCTACACACTACACACTGGTGTCTCCTCCTCTTGACACTGTATTTCGGGGCGCGCAGTGAGCTGCCGCAGGTGTGACAGTCCAGGGCCTGCGGAGGGCTCTGCGGCACACGCAGGTGCAAAGGGtgcacgtgcatagccttgtcgtgtggtcatcacgttgcatgagggcaagtatgtctgtggactaaaccccagatgtgggattcctggggcaaaAACATGAAgctctagcctgtcaccccagcactttgggaggccagcgtgagatgatcgctttggcccaggaggttgagaccagcctgggcaacaaagggagaccccgtctctaaaaaaaaaattaaaacattagctgggtgtggtgatgtacacctctggtcccagctactcaggaggccgaggtatgaggatcacttaagcctgggaagtcacagctgcagggagcagtgatcgcgccagtgcactccagcctgagtgacagcaagaccctgtctcaaaaaaaaaaaaaaaaaaaCAGACCAggntgcggtgtctcacacctgt s panTro1.chr19 1223434 980 - 82489036 ccaccacgcccagctaatttttgtatttttagtagggatgggttttcgccatgttggccaggctggtctcaaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctggaattacagatgtgagccacc-acgcccag--ccCCTAGT-TTCAAAACTCTT-ATCAATCCAGAACACTTCCTACCCAGCTGACAATTCCTTAAACATTTGCATTTTATTTATTTCTACTAGGTCATTCCTGCACATGGTTCAAAATTCAAAAGATGCAGAAGATATGAGGGCGAATGCCC-GTTTCCCCCACAGCCCAGGTTCCCTGGCTCTGCTTCCAAGGGCAAACAGTGTTACCTTGT-GGATATTCCCAGAGATCATTTCGTGAAAATTCCGGTAAACAGGTGCACACGTTGACATACATGCATTTTTTTCTTTTACACAGATGGCTACACACTACACACTGGTGTCTCCTCCTCTTGACACTGTATTTCTGGGCGCGCAGCGAGCTGCCGCAGGTGTGACAGTCCAGGGCCTGCGGAGGGCTCTGCGGCACACGCAGGTGCAAAGGGTGCATGTGCATAGCCTTGTCGTGTGGTCATCACGTTGCATAAGGGCAAGTATGTCTGTGGACTAAACCCCAGATGTGGGATTCCTGGGGCAAAAACATGAAgctctagcctgtctccccagcactttgggaggccagcgtgagatgatcgctttggcccaggagtttgagaccagcctgggcaacaaagggagaccccgtctctaaaaaaaaaattaaagcattagctgggtgtggtgatgtacacctccggtcccagctactcaggaggccgaggtgtgaggatcacttaagcctgggaagtcacagctgcagggagcagtgatcgcgccagtgcactccagcctgagtgacaacaagaccctgtctcaaaaaaaaaaaaaaaaaa--GGACCAGG-TGCGGTGTCTCACACCTGT a score=7741.0 s hg17.chr17_random 1808834 791 + 2618010 AGGCCCAGAGAGGCAA----------TGTGACCATAAGGGT----CAGAGGACACGGGGCCACGTCAGCCTGAGCTTCACACC-----------------TGCCCTGCGGCCACGGCTCCATTCCCAGAGTGGCCAGGACCGTAG-GACCCTGTGCCTT-----------------GGGGACATGTCCTGGGGTCTGACTCTCTGTGCCAATGAGTCAGGGCTGCCCTGGGCCTGAGA-----------ATACCCAGACAGGACTGGTG-----------------------------CCCGTGGGCAG---------GTGTCTGCCACCCCAGGCAGAGCCAAGTGG---CCTGTCCACGATCCCCCTGTGGAGCACTCCTATGTGGTCTCTGGAGGGAATCCATGGAGTCCCAGCAGCCAATGGAGACGACAAGGTCAGAGATGTGGAGACCGAGGGCTGGAGGTGAGAGAAGGGGTCCGGGGGAGT-CTGGTGGC-----------CTCCTTCTCGGGGCCTCCAGAGCCAGACCTCCAGGCAGGGCCTTGGACAGGACTCCCCACAAGGACAGAGCTCGGGAGGGAGAGGGGGCTGGGGAGCCCGAAAGAGGCCTGGCTGTCACCCTGTCTGGGGAGACTTTGCTGGGACCCCTGCCGTGCTGTGGGAGCTGGGGGAGCCACATGCGAGGTGCTGGCTCTTGGCCAACTCTGGCTTGAGCACTGCAGTCTGGCAGGC-GTGATGTTTGCTCC----------------------TCTGAGGT-GGCTGAAAGGGACCTGAGGGCGGATGGTGGTGTGTGTCTGGGGGGACCAGGCTCACTGAA-----CAGGACACTTGTGGGTTGGGCCCAAAGGGATTTCACCGACAAATAAAC---CNCTTTCTTCCCACATTTGTGCCGAA-AGAGAAA s canFam1.chr18 35733695 850 - 66173745 AGGCCCGGAAGGACAGATACAGTTGCTGCGGCCTGCAGGGTGTGACAGGGAGGTCTCCGCCGGGTCAGCCTGGGCTCCACACCCTGCTCCCCAGCACAGATGTCAGGAGCCGGCAGGCCTGTGCACAGAATGGGGAGCTTCTCAGAGACCCCACACCCTCACTCCCAGCAAGGTCAGGGGCCGTGCCGTGGGGAC-------------------GTCAGAGCCACCGTGGGCCTTAGAGGGACCCAAGCAGACCCCGAGAGCGCCAATGTCGTCTGCAGAGGGGTCTCCTCCCCGCCACCTGTGGCCAACTCGTCACCGTGTTGGCATCCCCAGGTGGCCCTGAGTGGAGACCTGTG---GTGTCCTCCACGGGCCGCTGCTCCATGTACCCTGTGGG--ACCTGTGCAGTCCAAATGGCCCAGGGAAAC--TGAGGTCAGGGATGGGGCGGCCAAAGGCTGCAGATGAAAACAGGTGTACACGAGAGTGCCGCTAGCTTGGGGGGCAGCCTCTTCCTGGGGCCTCCCGG---------------AGGGCCACGGACAG---------------TGGGCTTCCGGGGAGAGAGGGGCTGGGAGGGCCCGACAGCAGA--GACT---------TCAGGGGAAG-------GGGCCTGCCACGGTCACCTGGGATGTGGGGGACTCAGGTGC----TGCTGCCTGAAGACCAGCCCTGT-----GCGGAGAAGGGTGGTGGGCGGTGACACTGGCACCGTTAGACAGATGTCCCACCGCGCCTGAGGCGGGCCGAACGGGGTC----AGCGGACAGCTTTGCGTGTCTTCGAAGCCCGGGGTGCGTGGAGCGTTCATTATACCTGTGGGCTCGGGCAGATGGGATTTCTCCACCAAAGGAATACACGCTTTCCCCCTGTGTTCCTGACAAAGAAGGAAA a score=5322.0 s hg17.chr17_random 1809625 43 + 2618010 GAGGCGCAGCTCACCTAATGGTCAATCGGTCAATCGCTGCCAT s panTro1.chr19 1224414 43 - 82489036 GAGGCGCAGCTCACCTAATGGTCAATCGGTCAATCGCTGCCAC s canFam1.chr18 35734545 43 - 66173745 GAGGCAGGACCCAGCCCAGGGCCTCGGGGTCAGTCCTTGGTGC a score=-61.0 s hg17.chr17_random 1809668 14 + 2618010 GCTGTCCTGCAGGN s canFam1.chr18 35734588 13 - 66173745 ACTTTACTGCCAG- a score=6531.0 s hg17.chr17_random 1809682 35 + 2618010 ACCAGGGNACAAAACGAGCCCTAGGACACGAAGAG s panTro1.chr19 1224470 34 - 82489036 ACCAGGG-ACAAAACGAGCCCTAGGACACGAAGAG s canFam1.chr18 35734601 33 - 66173745 ACCAGTG-ACAAAATGAGCCC-AGGACACGCAAAG a score=3531.0 s hg17.chr17_random 1809717 45 + 2618010 GACGCTGGCCTGTAGCTCCGCAGTGACGGTGACCCCAGGCTGTCC s panTro1.chr19 1224504 45 - 82489036 GACGCTGGCTTGTAGCTCCGCAGTGATGGTCACCCCAGCTTGTCC a score=376742.0 s hg17.chr17_random 1809841 4366 + 2618010 GCTGTCCTGCAGGACCAGGAACAAAACGAGCCCTANGACACGAAGAGGACGCTGGCCTGTAGCTCTGCAGTGATGGTCACCCCAGCTTGTCCACGCTGACTTCTCACCTTTCCCAGGACGGTTGGCGCCTTTCATTNCTCTGGGGCGAAAACAGTCAGGACATTCATNCCAACACTGAGCCGTGTCTCTTCCAGCAGCGATGGCCAAGGCATAGCCTTTGCTATTCAGGGACTGAAAGCAGGGAACTTCCACTGTGTGACAACATTACAAATTTAAACTCTGTACTTAAAAAAAGAAAGCCAGCTGGgnncgtggtggctcacgcctgtaatccncagcactttgggaggccgaggcaggtgaatcacgaggtcaggagattgaaaccagcctgaccaacatggtgaaactctgtctctactacaaatagaaaaattagctgggtgtggtgctgcgtgcctgtnaattccagctacccaggaggctgaggcaagagaatctcttgaacccaggaggcggagattgcagtgagctgagatcatgccactgcactccagcctgggcaacagagcgagaccccatcttcaataaataaataagtaaaaataaaaaTATTTGTTAACGTTTGTGaatgtataccacagcagcaacaagcgtgcctggcccccatgtcttggtctctgatgccattcccccaacacaanggaaccangttcctgggagacacggctgactccagggctgggCTGGTGTCTGAGACAGGAAAAAAaaacagtgttttccctgctctcacacactcaacagtcaacatccaacatggaatacttcatctctggtcaccaaaatgtgtgtggggattttccccaaacaccaagcaagtctccagtggacacctactaggcatcctccaaccctgctccAGCGAGTCTCCGCAGGCACCCACTGGGTGTCCTCCAACCCTGTTCCATCCAGTCTCCGCGGACACCCGCTGGGCGTCCTCCAACCCGGTTCCatccagtctccgcggacacccgctgggcgtcctccaaccctgttccattgtgacgctttctccctggagacagtacccgatcctgcaggctaaggtctcagtcccacaagagtgtcctccacttcagatgccagtcccaagtacagctgtccctttgtatccttgggggatgggatccagtacctccaaaacaccagaatccacaaggccagagtccctgatacaaaatggcatgttatttgcatata--------accccctcctctggacttaaatcacctcttgattacttataacacctggtatgtaaattctatgtaaacagttgttacatagtattgctttttaaatttgtattatttg------tattattattactattattttgagatggagtctccctctgtcacccaggctgaagtatagtggcatgatcttggctcactgcaatctccgcctcccaggttncaagcaagtctcctgcctcagcctctggagtagctgggattacagtcacataccaccaggcctggctaatttctgttatttttagtagagacgggatttcaccatgttggttggtcaggctggtctcaaactcctgacttcaggtgatccacccacctccgcctcccaacagtgctggatgtacaggcatgagccactgcgccntggccttatttattgttttatttatttattttttgtattttc----------ttttgagacggagtcttgctctgttgnncccaggctggagtgcagtggcgcgatctcggctcactgcaagctctgcctcccgggttcacgccattctcctgtctcagcctcccgagtagctgggactaccagcgcccactgccacacctggctaattttttgtatttttagtagagacggggtttcaccacgttggccaggatggtctcgatctcctgaccttgtgatccgcccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcgncccggccttttcttcttttc-----gagactgagtcttgctctgtcgccaggctacagtgcagtggcacgatctcggctgactgcaacctctgccttccgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacccaccaccacgcccggctaatttttgtatttttagtagaaatggggtttcaccatgttggcctggctggtctcaaactcctgacctcaggtgatctgcntgcctcagcctctcaacgtgctgggattacaggcgtgacccaccgcgccgggcncangtattttttgtattttcagtctgaggtttgttgaatacttgggtgtggaacctgaggacagatgaccaaatgtagcaggtgtcacccgccctctggccaaccgaggttcccatggcccctcctccagttttgtgactttgctggagtggctcacagaactcagggaagcactttcctcattttattatttattgatttacttttggagatggggtttcattgtgttgcccgggctggagtgtgacggcataatcacagttcactgcaccctcaacctcctgggattaagcagtcctcccacctcaacctcccaagtagctgggattacggatgtgcaccaccacgcccaactcattttttttttttttttgagatggnagtctcactccgttgcccaggctggagtgcagtggtgcaatctcagctcacggcaacctcggtctcctgggttcaagcgattctcctacctcagcctccccagtaactgagattacaggcatgtgccactacacttagccaa--ttttttttttttntgagacagagtcttgctctgttgcccaggctggagtgcagtggcactatcttggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccatcaccacgcctggataattttttgtatttttagtagagatggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccaccttggcctcccaaagtgctgggattacaggtgtgagccaccgcacccagccaatngtttttttttttttaaatatagacagagttttaccatgttggccaggctgntctcaaacccctgaccttaaatgatctacctgcctcggcctcccaaagtgctgagatgacaggcgtgacctactgcgcccagccaattttcgtattttttgtagagatggggtctcactatgttggccaggctggtctggaactcctgagctcaagtgatctgcctgcctcagcctcccaaagcgctgggatgacaggcgtcagccaccgagctccgccaacactttatttatgtttccccatngtgtgacaaaggacccagatgaacagcagatagaggcaatgctgttcatctggaggcctctccagggagcttccaggaccctccaagcattccgccacctggaaacctcccaaccctgtccttttgggttttatggagacttcattacgtaggcatgactgattacatcattggtcactggtgatcagctcagccttcagcccctgtccctcctggaggctgcaagtggggctagaagctctgcccttctgatcacatagtagctgccaccaaccccccnnacncccaaggctgtccaggagcccaccaggagtcgcctcattagaacaaaagacgctcctgtcacccaggaaattcaaggggattgggagccccnatgtcagatgatcctatgggttaggagattataaaggttttaggagctctatgtcaggaaccggggntcaaagaccaaataccacaataaaagactcctcctgcctctgtctgaaagggtcttagaagttctgtctcagaaacccagggcagagattcagtaggcatttctttttctttttc--tttctttttttttttt---------gaggagtctcgctctgttgcgatctcagnctcactgncaagctccgcctcccaggttcacgccattctcccacctcagcctcccgaggagctgggagctgccctacaggtgcgtgccaccatgcccagctaattttgtttttgtatttttagtagagacggggtttcactgtgttagccaggacggtctcaatttctcctgaccttgtgatccgtcttcctcggcctcccaaagtgttgggattacaagtgtgagccactgcgtccggccC---------ttttttttttgagacggaatctagctctgtcacccaggctggagtgcaatggcgtgatttcggctcactgcaacctctgcctcctgagttcaagcgattcttctg s panTro1.chr19 1224457 4298 - 82489036 GCTGTCCTACAGGACCAGGGACAAAACGAGCCCTAGGACACGAAGAGGACGCTGGCTTGTAGCTCCGCAGTGATGGTCACCCCAGCTTGTCCACGCTGACTTCTCACCTTTCCCAGGACGGTTGGCGCCTTTCATT-CTCTGGGGCGAAAACAGTCAGGACATTCA-CCCAATACTGAGCCGTGTCTCTTCCAGCAGCGATGGCCGAGGCATAGCCTTTGCTATTCAGGGACTGGAAGCAGGGAACTTCCACTGTGTGACAACATTACAAATTTAAACTCTGTACTTAAAAAAAGAAAGCCagccggg--cgtggtggctcacgcctgtaatcc-cagcactttgggaggccgaggcaggtgaatcacgaggtcaggagattgaaaccagcctgaccaacatggtgaaactctgtctctactaaaaatagaaaaattagctgggcgtggtgctgcgtgcctgt-aattccagctacccaggaggctgaggcaagagaatctcttgaacccaggaggcggagattgcagtgagctgagatcatgccactgcactccagcctgggcaacagagcgagaccccatcttcaataaataaataagtaaaaataaaaaTATTTGTTAACGTTTGTGaatgtataccacagcagcaacaagcgtgcctggcccccatgtcttggtctctgatgccattcccccaacacaa-ggaaccaggttcctgggagacacggctgactccagggctgggCTGGTGTCTGAGACAGGAAAAAAaaacagtgttttccctgctctcacacactcaacagtcaacatccaacacggaatacttcatctctggtcaccaaaatgtgtgtggggattttccccaaacaccaagcaagtctccagtggacacctactaggcgtcctccaaccctgctccatccagtctctgcggacacctactaggcatcctccaaccccgttcc--------------------------------------------------------------------------------------------attgtgacgctttctccctggagacagtacccgatcctgcaggctaaggtctcagtcccacaagagtgtcctccacttcagatgccagtcctaagtacagctgtccctttgtatccttgggggatgggatccagtacctccaaaacaccagaatccacaaggccagagttcctgatacaaaatggcatgttatttgcatataacctctgcaccccctcctctggacttaaatcacctcttgattacttataacacctagtatgtaaattctatgtaaacagttgttacatagtattgcttTTTAAATTTGtattatttgtattattattattattactattattttgagatggagtctccctctgtcacccaggctgaagtatagtggcatgatcttggctcactgcaatctccgcctcccaggtt-caagcaagtctcctgcctcagcctctggagtagctgggattacagtcacataccaccaggcctggctaatttctgttatttttagtagagatgggatttcaccatgttggttggtcaggctggtctcaaactcctgacttcaggtggtccacccacctcggcctcccaacagtgctggatgtacaggcatgagccactgcgcc-tggccTTATTTACTGTTTTATTTATTTAttttttgtattttcttttttttttttttgagacggagtctcgctctgtcg--cccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcaccccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccgccacacctggctaattttttgtatttttagtagagacagggtttcaccacgttggccaggatggtctcgatctcctgaccttgtgatccacccgccttggcctcccaaagtgctgggattacaggcatgagccaccgcg-ccctgccttttattcttttctttttgagactgagtcttgctctgtcgccaggctacagtacagtggcacgatctcggctgactgcaacctctgccttccgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacccaccaccacgcccggctaatttttgtatttttagtagaaatggggtttcaccatgttggcctggctggtctcaaactcctgacctcaggtgatctgcctgcctcagcctctcaacgtgctgggattacaggcgtgacccaccgcgccgggcc--AGTATTTTTTGTATTTTCAGTCTGAGGTTTGTTGAATACTTGGGTGTGGAACCTGAGGACAGATGACCAAATGTAGCAGGTGTCACCCGCCCTCTGGCCAACCgaggttcccatggcccctcctccagttttgtgactttgctggagtggctcacagaactcagggaagcactttcctcattt--ttatttattgatttacttttggaggtggggtttcattgtgttgcccgggctggagtgtgacggcataatcacagttcactgcaccctcaacctcctgggattaagcagtcctcctacttcaacctcccaagtagctgggattacggatgtgcaccaccacgcccaactca-tttttttttttttttgagatgg-agtctcactctgttgcccaggctggagtgcagtggtgcaatctcagctcacggcaacctcggtctcctgggttcaagtaattctcctacctcagcctccccagtaactgagattacaggcatgtgccactacacttagccaattttttttttttttttgagacagagtcttgctctgttgcccaggctggagtgcagtggcactatcttggctcactacaagctctgcctcccgggttcatgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccaccacgcctggataattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgcgatccgcccaccttggcctcccaaagtgctgggattacaggtgtgagccactgcacccagccaattg-ttttttttatttaaatatagacagagttttaccatgttggccaggctggtctcaaacccctgaccttaaatgatctacctgcctcggcctcccaaagtgctgggatgacaggcgtgacctactgcgcccagccaatttttgtattttttgtagagatggggtctcactatgttggccaggctggtctggaactcctgagctcaagtgatctgcctgcctcagcctcccaaagcgctgggatgacaggcgtcagccaccgagctccgccaacactttatttatgtttccccat-gtgtgacaaaggacccagatgaacagcagatagaggcaatgctgttcatctggaggcctctccagggagcctccaggaccctccaagcattccaccacctggaaacctcccaaccctgtccttttgggttttatggagacttcattacgtaggcatgactgattacatcattggtcactggtgatcagctcagccttcagcccctgtccctcctggaggctgcaagtggggctagaagctctgcccttctgatcacatagtagctgccaccaacccccca---ccccaaggctgtccaggagcccaccaggagtcgcctcattagaacaaaagacgctcctgtcacccaggaaattcaaggggattgggagcccc-atgtcagatgatcctataggttaggagattataaaggttttaggagctctatgtcaggaaccaggg-tcaaagaccaaataccacaataaaagactcctcctgcctctgtctgaaagggtcttagaagttctgtctcagaaacccagggcagagaTTCAGTAGGCATTTCTTTTTCtttttctttttcttttttttttttctttttgagaaggagtctcgctctgtcgcgatctcag-ctcactg-caagctccgcctcccaggttcacgccattctcccacctcagcctcccgaggagctgggagctgccctacaggtgcgtgccaccatgcccagctaattttgtttttgtatttttagtagagacggggtttcactgtgttagccaggacggtctcaatctctcctgaccttgtgatccgccttcctcggcctcccaaagtgttgggattacaagtgtgagccactgcgcccagccctttttttttttttttttttgagacggaatctaactctgtcacccaggctggagtgcaatggcgtgattttggctcactgcaacctctgcctcctgagttcaagcgattcttctg a score=38578.0 s hg17.chr17_random 1814747 432 + 2618010 ATGCTGCTGACACCCTGAGCCAGGGAAGGCACAACTGACCCCANNAAGAAAGAAAAACTTCCACATGAAGAATGACGTGGGNGgggcgcagaggctcacgcctgcaatcctttgggaggacttntgggaggccgaggcgggtagatcatgaggtcagcagttccagaccagcaggccaacatggtgaaaccctgcctctactaaaatacaaaaattagccgggtgtggtggcgggcacctgtagtcctagctactcgggaggctgaggcagaatggtgtgaacccgggaggcggagcttgaagtgagccgagactgcgccactgagctccagcctgggcgacagagcgagactccagctcaaaaaaaaaaaaaCATGAGATGCTCATTTTCAGTTGCCAGTTATCAAAAAACAGGAAGCTGTTTGGGCCCAA s panTro1.chr19 1190487 431 - 82489036 ATGCTGCTGACACCCTGAGCCGGGGAAGGCACAACTGACCCCAGAAAGAAAGAAAAACTTCCACATGAAGAATGACGTGGGTGgggcgcagaggctcacgcctgcaatcctttgggaggactt-tgggaggccgaagcgggtagatcatgaggtcagcagttccaggccagcaggccaacatggtgaaaccctgcctctactaaaatacacaaattagccaggtgtgggggcgggcacctgtagtcctagctactcgggaggctgaggcagaatggtgtgaacccgggaggcggagcttgaagtgagccgagactgcactactgcgctccagcctgggtgacagagcgagactccagctcaaaaaaaaaaaaaCATGAGATGCTCATTTTCAGTTGCCAGTTATCAAAAATCAGGAAGCTGTTTGGGCCCAA a score=-75.0 s hg17.chr17_random 1815179 5 + 2618010 -CCCAG s panTro1.chr19 1190918 5 - 82489036 -CCCAG s canFam1.chr18 35710518 5 - 66173745 CCCCT- a score=7050.0 s hg17.chr17_random 1815184 124 + 2618010 GGAAGGCAGAACTGGTGCTAAGACTCATGTCCCTCCT--------TCCCCAGCACCCCCCA-------------------CTGTCCCGTCCCCCGTCCCTGGCCAGCTGAA---CGATCCTGTGCCCCACAC--------------AGTCAGC--------------------------CTCCCCCAGAGCACG s panTro1.chr19 1190923 124 - 82489036 CGAAGGCAGAACTGGTGCTAAGACTCATGTCCCTCCT--------TCCCCAGCACCCCCCA-------------------CTGTCCCGTCCCCCGTCCCTGGCCAGCTGAA---CGATTCTGTGCCCCAAAC--------------AGTCAGC--------------------------CTCCCCCAGAGCACT s mm5.chr11 1299934 163 - 121648857 GGAAGGCAGAG--GATCCCAGGACTA--GCTTCAACC--------TCTCCAGCCCTTCTCAGGCCCAT--GGGCAAAGCTTTGACACATCTCCCAGTC--AGCCCACGGAAGTCCCATCCAATGCTCCACAG--------------ACCCAGCAGAGAGAGAGAAGTGGAGCCACTGTGCTTCCCCATTGGAC- s canFam1.chr18 35710523 183 - 66173745 GGAAAGCGGTGCAGGTGTGAGGACACGGGTCTCGCCTGACACATCCCTCCATTTACCCTCACGCTCCTCCGACCACTGCAACAGACCATCCCATCTGCTTAGCATGCTGAG---GCCTCCTGTGGTCCAAACAGCTTGAGTCAAAGAGCCAGAAGAAGCAGTCCTGCTGGCCC------CTCCCTGAGAGCC-- a score=111008.0 s hg17.chr17_random 1815308 161 + 2618010 ACCCACCATGTTCTCAGGCCCCTCACGGCTCCGGGAAGCGGGCACCATCTCCAGCTTGGCATTGTTGGGCAGGTTGGCAAATCTCCACTGGANGAGAAAGGTCGAGCACGCTCCTCTGAAANCCTGCAAGACAGACCAGAGCACACTTGCTGCCCTGCAGA s panTro1.chr19 1191047 159 - 82489036 GCCCACCATGTTCTCAGGCCCCTCACGGCTCCGGGAAGCGGGCACCATCTCCAGCTTGGCATTGTTGGGCAGGTTGGCAAATCTCCACTGGA-GAGAAAGGTCGAGCACGCTCCTCTGAAA-CCTGCAAGACAGACCAGAGCACACTTGCTGCCCTGCAGA s mm5.chr11 1300097 156 - 121648857 ACCTACTATGTTCTCAGGCCCCTCGCGGCTACGGGACACAGGCACCATCTCCAGCTTGGCATTGTTAGGCAGGTTGGCAAATCTCCACTGGA-GAGAGAGGTCTAGCACCGTCCTCTGAAA-CCTGCAGAACAAACACAGCCATA---ACTGTCCTAAAGA s rn3.chr10 647727 156 - 110733352 ACCTACTGTGTTCTCAGGCCCCTCGCGGCTACGGGACGCAGGCACCATCTCCAGCTTGGCATTGTTAGGAAGGTTGGCAAATCTCCACTGGA-GAGAGAGGTCAAGTACGGTTCTCTGAAA-CCTGCAAAACAGACACAGTCACA---ACTGTCCTGAAGA s canFam1.chr18 35710706 159 - 66173745 ACCTACCATGTTCTCGGGCCCCTCGCGGCTCCGGGAGACAGGCACCATCTCCAGCTTGGCATTATTGGGCAGATTGGCAAACCTCCACTGGA-GAGACAGGTCGAGCACATTCCTCTGAAA-CCTGCAAAGCAAGCCACAGCTCATGGGCTCCCCTGCAGA a score=1845.0 s hg17.chr17_random 1815469 18 + 2618010 GCCTGAcac-gc-cctgcca s panTro1.chr19 1191206 18 - 82489036 GCCTGACGT-GC-CCTGCCA s mm5.chr11 1300253 19 - 121648857 CACAGCCCC-ACGCCTGCTG s canFam1.chr18 35710865 19 - 66173745 TCCTGACACAGC-CCAGCTA a score=611.0 s hg17.chr17_random 1815487 3 + 2618010 tcc s panTro1.chr19 1191224 3 - 82489036 Tcc s mm5.chr11 1300272 3 - 121648857 TTC a score=66626.0 s hg17.chr17_random 1815490 789 + 2618010 acgccccgccatccccgtcccaccatccacgccccgccatccacgccccgccatccacg------------------------------------------tcCTGTGGCAGCTCCCCAACAGCGGGACGTCATGACCTGCAGAGGCACAAGGCGGGTCCCCGATCATATGGGGCCTCCNTGCAAGCAGAAGGGAGCAGGAAAAAGGGAGATGTGGGCCTCGGTGCACGCCGAGGGGGCTGCTCCTTCAGAGTCTGGGGTGCTGACAGCCCCAGTGCAGACGCTCGGAAAACACAGAGAGA--ACGACTGGGGCGTGAACACTGCTGCACTCGCGGAAGCTGGAGTGTCACAGACCCCGGCCGTCACGGCTGGAGCCACCACAGAAAACCTGACTGCccgggcgcagtggctcacgcctgtaatcccagcactttcggaggccgaggcaggcggatcacctgaggttcaggagtttgagacaagcctgaccaacatggtgaaaccccgtctctactgaaaatacaaaaatatcccatctctactaaaaatacaaaaaaataagctgggcatggtggctcaggcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggctgcagtgaggcaagatcatgccactgcactcctgcctgggcaacaagagcaaaactctgtgaaagaaaaaaggaaaggaaaggaaagaaaagaaaagaaaagagaaaggaagaaaaagaaaaagagaagaagaaagaaagaaagaaagagaaaacaagaaagaaaaagaaagaaaagaannaagaaa s panTro1.chr19 1191227 819 - 82489036 acgccccgccatccacgccccgccatccacgccccgccatccacgccccgccatccacgccccgccatccatgtcccgccatccacgccccgccaTCCACGTCCTGTGGCAGCTCCCCAACAGCGGGACGTCATGACCTGCAGAGGCACAAGGCGGGTCCCCGATCACATGGGGCCTCC-TGCAAGCAGAAGGGAGCAGGGAAAAGGGAGACGTGGGCCTCGGGGCACGCCGAGGGGGCTGCTCCTTCAGAGTCTGGGGTGCTGACAGCCCCAGTGCAGACGCTCGGAAAACACAGAGAGAGAACGACTGGGGCGTGAACACTGCTGCACTCGCGGAAGCTGGAGTGTCACAGACCCCGGCCGTCACGGCTGGAGCCACCACAGAAAACCTGACTGCccgggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacctgaggttcaggagtttgagacaagcctgaccaacatggtgaaaccccgtctctactgaaaatacaaaaacatcccatctctactaaaaatacaaaaaaataagctgggcatggtggctcaggcctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcagaggctgcagtgagctgagatcatgccactgaactccagcctgggcaacaagagcaaaactctgtgaaagaaaaaagaaaaggaaaagaaagaaaataaaaga-----gaaaggaagagaaaga------gaagaagaaagaaagaaagaaagagaaaacaagaaagaaaaagaaagaaaagaa--aACAAA a score=136.0 s hg17.chr17_random 1816279 2 + 2618010 AA s panTro1.chr19 1192046 2 - 82489036 AA s mm5.chr11 1301922 2 - 121648857 AC a score=31072.0 s hg17.chr17_random 1816281 104 + 2618010 TCTGAATATACTCAAAGTGGTTGGCCTCACTTTGGAAATGCAAGCTGCTGTCGGAGACAA----CTAGTGAAGAGA-----GTTCAGACAGCCCAGGGGCATCTGGAAGAATT s panTro1.chr19 1192048 104 - 82489036 TCTGAATATACTCAAAGTGGTTGGCCTCACTTTGGAAATGCAAGCTGCTGTTGGAGACAA----CTAGTGAAGAGA-----GTTCAGACAGCCCAGGGGCATCTGGAAGAATT s mm5.chr11 1301924 110 - 121648857 TTTGAATATA--CAAAGTGACTAGCCCAACATTATAAATGCAAGACACTGTTGGAAATAAGAGTTTTCTGGACAGG-ACCTGTTAATAAAGCCCAAGGGTGTTTAGAAGAGCT s rn3.chr10 650105 111 - 110733352 TTTGAATATA--CAAAGTGACAAACCTAACATTATAAATGCAAGACACTGTTGGAAATAACAGTTTTCTGGACTGTGACCTGCTAATAAAGCCCAAGGGTATTTAGAAGAACT a score=302.0 s hg17.chr17_random 1816385 2 + 2618010 AA s panTro1.chr19 1192152 2 - 82489036 AA s rn3.chr10 650216 2 - 110733352 GA a score=1680.0 s hg17.chr17_random 1816387 40 + 2618010 GAGAGAACAAAC-----------------------------------------------TTTGCTAT--------------ATCAACACTGGCCAGAAAAG s panTro1.chr19 1192154 40 - 82489036 GAGAGAACAAAC-----------------------------------------------TTTGCTAT--------------ATCAACACTGGCCAGAAAAG s rn3.chr10 650386 101 - 110733352 GAAAGGGGAAACTGATAACACGACAGCCTCATCAGCTGGTTCTTGTTGGCTGACTGGGATTGGCCATTGTTGATCCCAATCCTCAACATAGGTTCAAAAAA a score=0.0 s hg17.chr17_random 1816427 5 + 2618010 TGAGT a score=91.0 s hg17.chr17_random 1816427 1 + 2618010 T s panTro1.chr19 1192194 1 - 82489036 T a score=70.0 s hg17.chr17_random 1816428 4 + 2618010 GAGT s panTro1.chr19 1192195 4 - 82489036 GACT s mm5.chr11 1302315 4 - 121648857 AAAC a score=53335.0 s hg17.chr17_random 1816432 266 + 2618010 CTGGAAATTGCCACATGAAATGTCTACGTCAAGACAGGATAGCAGATCGGGGG-ATCCCGAGGGCAGGCAGGCTGGGAACCTTG-------GAGCGGAGGGCA--CTGTTCACGCCTGGGGCTGCATTCCTCTGCACCGGCTGCACTTTGTAAGCAAGTGGTACCATTAGCAGA-GGAAAAGGGCACCTGAAAACATGGCTA---TGGTATTGC--AGGACCTGCCTCAAAATCGCACTCACTGGTTCCCACCAGACACCACCACACAGACCACGGGCAGGT s panTro1.chr19 1192199 267 - 82489036 CTGGAAATTGCCACATGAAATGTCTACGTCAAGACAGGATAGCAGATCGGGGGGATCCTGAGGGCAGGCGGGCTGGGAACCTTG-------GAGCAGAGGGCA--CTGTTCACGCCTGGGGCTGCATTCCTCTGCACCGGCTGCACTTTGTAAGCAAGTGGTACCATTAGCAGA-GGAAAAGGGCACCTGAAAACATGGCTA---TGGTGTTGC--AGGACCTGCCTCAAAATCGCACTCACTGGTTCCCACCAGACACCACCACACAGACCACGGGCAGGC s mm5.chr11 1302319 254 - 121648857 CAGCAAACTGCCATAGAAAATG-CTAGTGGGAACCAGGACATCAGGCCTAAGA------------------GCTGAGAACACTGG-GTGGAGAGAAGAGGCCACTCTGTTTACAGCCAGG--CACCAGCCAGGGCAATGGGAGCAGTTCTTAAACAAAT--TACAGTCAGTGGA-TGGAAAGGGAGAC-AAGGGCAGAGCTAATGTAGTGTTGTAGAGGAACTGGCTC-AAATTATAGTCATT-GCTCCAACCAGACACCATTACGTGGACCATGGGCAGGT s rn3.chr10 650487 253 - 110733352 CAGCAAACTGCCACAGAAAATG-CTGGTGTGAACCAGGACAACAGGCCTAAGA------------------GCTGAGAACAATGGAGAGGAGAGGAGAGGCCTCTATGCTTACAGTCAGG--CACCAGCCAGGGCAGCGGGAGCTGCTCTTAAACAAAT--TACAGTCAGTGGATGGAAAAAAGAGAC--AAGGCAGAGCTAATGCAGTATTATAGAGGAACTGGTC--AAATTATAGTCATT-GTTTC-ACCAGATACCATTACATGGACCATGGGCAGGT a score=155213.0 s hg17.chr17_random 1816698 1771 + 2618010 GAACACTGAGAAGTAACAATGCGCTGNgngcgcggtggctcatgcctgtaatcccagcaatttgggaggcccagacgggcagatcacttgaggtcaggagtttgagagcagtctggccaatgtggtgaaactccgtctctactaaaaatacaaaaattagccaggcatggtggcacaggcctgtagtcccagctactcgggaggctgaagtgggaggagtgcttcaacccgggaggcgngaggntgcagtgtgccaagatcgcgccattgcactccagcctgggcgacagagcgagactccgtctcaanaaanagaaagaaaaaTGAggccaggtgcagtggctcacgcctatcatcccagcactttgggaggccaagacgggcggatcacttgaggtcaggagtttgagaccagcctggtccacatggtgaaaccccgtcactactaaaaatacaaaaattagccaggcgtggcacgtgcctgtaattccagctactcaagacgctgaggcacaataatcgcttgaacccgggaggcagaggttgcggtgagctgagatcatnccactgccctccagcctaggtgacagagcaagactctgtttcagaaaaaTggccanncacagtgactcatgcctgtaatcccaacacttnggaagaccaangcgnnnnnancacntgagnnnnggactnnaanaccagcatgaccaacatggtgaaaccccgtccctactannaatacaaaaattagctgggcatgatggcgcacncctgtaatcccagctactcgggaggctgaggncanaagaatcacttgaacctgggagacagaggtntgcagtgagccgagatagcgccactgtactacagcctgtgtgacagagcgagactccacctcaaaaaataataaaataaaaaagaaataaaaatgaaaccctaagccccccccaancaactgaaccagcctcctcttggcccaggggaccccagaaaccttgaaagctgagttnctggccatggctgggtgggagatcagacacatctgcaggctctcttccctaagggataaacngaaagcagccnctttccnaagacccctgggctggtatctgacatcagccaacctcccgccaggcccttctctncttgcnggtttcttcaaaacaacccacaggtatttcctgataagaaaccaccaaccatggagtggttctggcacagtcagggttttcgtggcacagtcttcatgtcctctgatttgccatttATTTATTTATTTACTTATTTACTttttttgtagagacagggtctcactatgttccccaggctgatctcgaattcctgggctcaggcaatcctccgcctcgggcacccaaagtgctaggattacaggcatgagccacttcacccagcctgcttcacctctgacttcagaggccaaaaattccaccctcaggtcatgctggcactgccattttttgcacataggacccgtgaaganggcaggaagctcaactgtgtgcacagttctcctttcatgaantactcatgatcctcctacagcgtattaagtacgtctgtatcagccaccccattcggtgtaaatccctgtcttattcttccctctcttgaagtgtctgtttccagcttctggctggaggctacacttcccagcctgttagaatggccaccctgcaagctgcaaccggttatgagaaataaagccctcctttccaaacatatgaaccgcattcttcagttgacaAGAGAG s panTro1.chr19 1192466 1761 - 82489036 GAACAGTCAGAAGTAACAATGCgctggg--cgtggtggctcatgcctgtaatcccagcaatttgggaggcccagacgggcagatcacttgaggtcaggagtttgagagcagtctggccaatgtggtgaaactccgtctctactaaaaatacaaaaattagccaggcgtggtggcgcaggcctgtagtcccagctactcgggaggctgaagtgggaggagtgcttcaacccgggaggcg-gaggttgcagtgtgccaagatcgtgccattgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaagaaagaaaaaTGAggccaggtgcagtggctcacgcctatcatcccagcactttgggaggccaagacgggcggatcacttgaggtcaggagtttgagaccagcctggtcaacatggtgaaaccccatcactactaaaaatacaaaaattagccaggcgtggcacgtgcctgtaattccagctactcaagatgctgaggcacgataatcgcttgaacccgggaggcagaggttgcggtgagctgagatcatgccactgccctccagcctaggtgacagagcaagactctgtttcagaaaaaTggccaggcacagtgactcatgcctgtaatcccaacactttggaagaccaaggcgggcagatcacctgaggtcaggacttgaagaccagcctgaccaacatggtgaaaccctgtccctactaaaaatacaaaaattagctgggcatgatggcgcatgcctgtaatcccagctactcgggaggctgagg-cagaagaatcacttgaacctgggagacagaggt-tgcagtgagccgagatagcgccactgtactacagcctgtgtgacagagcgagactccacctcaaaaaataataaaataaaaaagaaataaaaatgaaaccctaagccccccccaaccaactgaaccagcctcctcttggcccaggggaccccagaaaccttgaaagctgagttcctggccatggctgggtgggagatcagacacacctgcaggctctcttccctaagggataaacagaaagcagcc-ctttccaaagacccctgggctggtatctgacatcagccaacctcccaccaggcccttctct-cttgc-ggtttcttcaaaacaacccacaggtatttcctgataagaaaccaccaaccatggagtggttctggcacagtcagggttttcgtggcacagtcttcatgtcctctgatttgccatttATTTATTTATTTACTTATTTACTttttttgtagagacagggtctcactatgttccccaggctgatctggaattcctgggctcaggcaatcctccgcctcgggcacccaaagtgctaggattacaggcatgaggcacttcacccagcctgcttcacctctgacttcagaggccaaaaattccaccctcaggtcatgctggcactgccattttttgcacataggacccgtgaaga-ggcaggaagctcagctgtgtgcacagttctcctttcatgaa-tactcatgatcctcctacagcgtattaagtacgtctgtatcagccaccccattcggtgtgaatccctgtcttattcttccctctcttgaagtgtctgtttccagcttctggctggaggctacacttcccagcctgttagaatggccaccctgcaagctgcaaccggttatgagaaataaagccctcctttccaaacatatgaacctcattcttcagttgacaAGAGAG a score=43983.0 s hg17.chr17_random 1818469 157 + 2618010 ACTGGAGAAGGATGGTGTGAAGGTCTGGGGCAGAA-AGCCCAAGACCACCTGG-CATTC-AGAGCACAGGTCCTGGGNATTCTCACGTGGTCCAGANCACAAG-GTAGAAGACTGGAATGACTTG--GCAGGTATCACCCCTAAGAAACTCCTCCCAGGAGAG s panTro1.chr19 1194227 155 - 82489036 ACTGGAGAAGGATGGTATGAAGGTCTGGGGCAGAA-AGCCCAAGACCACCTGG-CACTC-AGAGCACAGGTCCTGGG-ATTCTCACACAGTCCAGA-CACAAG-GTAGAAGACTGGAATGACTTG--GCAGGTATCACCCCTAAGAAACTCCTCCCAGGAGAG s mm5.chr11 1302575 159 - 121648857 ACAGAACAGAGCTGGCACAAAGCTTTGTGGCAGGATATTGTTAGATGGCTTGGCCACTCAAGAGCACATGTTCTGGG-ATTCTTA-GAAGACCAGA--ACGGGAGCCGGAGACTGGAATGGCCTGATATAGGTATCTTTTCCAAGAAACTTCTTCCTAGAAAG s rn3.chr10 650742 156 - 110733352 ACAGAACAGAGCTAGCACAAAGTTTTGTGGCAGGATACTGTAGGATGGCTTGGCCACTC-AGAGCACATGTTCTGGG-ATTCTTA-AAAGACCAGA--ACGGGAGCCAGAGACTGGAATGGCCTG--GCAGGTATCTTTCCCAAGAAACTTCTTCCTAGAAAG a score=672.0 s hg17.chr17_random 1818626 10 + 2618010 CCTCGTAAGG s panTro1.chr19 1194382 10 - 82489036 CCTCGTAAGG s mm5.chr11 1302734 9 - 121648857 CC-CACACGA a score=8133.0 s hg17.chr17_random 1818636 66 + 2618010 CAGGGTGGGCAATG-CCAGGAGGGCAAGCTCCT---------GCCCNTC-TGCCCCCAGTGTTAGGNACAACAGTAC s panTro1.chr19 1194392 64 - 82489036 CAGGGTGGGCAATG-CCAGGAGGGCAAGCTCCT---------GCCC-TC-TGCCCCCAGTGTTAGG-ACAACAGTAC s mm5.chr11 1302743 48 - 121648857 CAGCATGGGAAAGG-CCAAGAGAGTGGGCTTCT--------------T----------GTGTTAGG----ACAATGT s canFam1.chr18 35711327 76 - 66173745 CAGGGGCAGCAGGGCCCAAGAAAGCAGGCTCCCCCACCAGGGGCTCCTCTTGTCCCCGATGTGAAG-ACGGCTATAC a score=4733.0 s hg17.chr17_random 1818702 20 + 2618010 TGTAAAAACAGGTCTTCAAg s panTro1.chr19 1194456 20 - 82489036 TGTAAAAACAGGTCTTCAAg s mm5.chr11 1302791 20 - 121648857 TGTGAAAACATGTCTCCAAG a score=24679.0 s hg17.chr17_random 1818722 309 + 2618010 ggcaggcatggtgactcatctctgtaatcccagtactttgggaggccaaggcaggcggatcacaaggtcaggagttctagaccgtcctggccaatgtggtgaaaccccatctctactaaaaatataaaaattagctgggtgtgttggtgagcacctctaatctcagctnactcgggaggctgaggcaggagaatcacttgaacctaggaggtggaggttgcagtgagccaagaccgtgccactgcactccagcctgggcgacaagagtgaaaccnctgtctcaaaaacaaaacaaaacaaaaaaaa--caC s panTro1.chr19 1194476 298 - 82489036 ggcaggcatggtggctcatgtctgcaatcccagtactttgggaggccgaggcaggcagatcacaaggtcaggagttctagaccgtcctggccaacgtggtgaaaccccgtctctactaaaaatacaaaaattagctgggtgtgttggcaagcacctctaatctcagct-actcgggaggctgagggaggagaatcacttgaacctaggaggtggaggttgcagtgagccaagaccgtgccactgcactccagcctgggcgacaagagtgaaacc-ctgtctcaaaaa-----------aaaaaaaaaCCAC a score=1253.0 s hg17.chr17_random 1819031 19 + 2618010 CAGNAAAACAGGACTTTAA s panTro1.chr19 1194774 18 - 82489036 CAG-AAAACAGGTCTTTAA s canFam1.chr18 35711403 19 - 66173745 CACTAAGACACACTGCTAA a score=19131.0 s hg17.chr17_random 1819050 103 + 2618010 AGTGAAAAGCTTCGCGTGTGGGATAGACACGCACATCCTATCCATATGAGGGCTCTGACCCTTCTGCTGTCTCAGACTCCTTGAGAGTCTGGCAGAAGCC--CTC s panTro1.chr19 1194792 103 - 82489036 AGTGAAAAGCTTCGCATGTGGGATAGACACGCACATCCTACCCATATGAGGGCTCTGACCCTTCTGCTGTCTCAGACTCCTCGAGAGTCTGGCAGAAGCC--CTC s mm5.chr11 1302811 77 - 121648857 AAT-AAAAGCTCTAC--TTAAGACAGAAACCTGCAT----------------------CCCTCCTATGGCCTCAGACCC---GAGGACCTGGTGGAGGACTGCTC s canFam1.chr18 35711422 101 - 66173745 GGTGAAGCGCTCCTCAGGTGGCACAGAAACCCACACCT--ACCGTGGCAGGGTTCTGACCCTTCTGCTGTTCTAGACCACCTAAGAATCTGCTGAAAGCC--CTC a score=2975.0 s hg17.chr17_random 1819153 20 + 2618010 TCTTGGGAACAATATCCCCA s panTro1.chr19 1194895 20 - 82489036 TCTTGGGAACAATATCCCCA s mm5.chr11 1302888 20 - 121648857 TCTTTGTACTAACACCCTGA a score=28939.0 s hg17.chr17_random 1819173 237 + 2618010 CACAGAAGCGTACGTGT-----AATTCCAGGGGCTGTGAGACTGCAGGGATCCACCTGCA----------GTTTTCAAGGCATCCTATTTCTCCACGGCCAGCTCTTTC--CCCTCAGAGCCCCACTGGGAACTTATGCAACTCAATGC---AATAAAACCTACA----GGgggttgaatggtggcccccccaaaaaagatgggtcaatgtcctcacccccaggacctctgaacat---ctta---------------ctagggatcctggtctttgaa s panTro1.chr19 1194915 237 - 82489036 CACAGAAGCGTACGTGT-----AATTCCAGGGGCTGTGAGACTGCAGGGATCCACCCGCA----------GTTTTCAAGGCATCCTATTTCTCCATGGCCAGCTCTTTC--CCCTCAGAGCCCCACTGGGAACTTATGCAACTCAATGC---AATAAAACCTACA----GGgggttgaatggtggcccccccaaaaaagataggtcaatgtcctcacccccaggacctctgaacat---ctta---------------ctagggatcctggtctttgaa s mm5.chr11 1302908 225 - 121648857 CCCAGAGACCCAGACATGGGAGGACTACAGCAGCTGGGAGGCG--AACAATCCCTTTACA----------GCTTTCTAGCCATTCCTTT------------------------------GTCCTACCAGGAATTTACACAG---ACAGC---CA-AAACCCTGCATTTGTGGGTTTAGACAGTGCTCCCC----AAAAGATACATCACTGTTCTTGCCCCTAAAACCTGTGAAAATGACCTTATTTGTCACAAGT-ATTTATGAATGTAGGTTAAGAGA s canFam1.chr18 35711743 246 - 66173745 --CAGAGACCCATGCATGC---AAGCCCAG-GGCAGTGAGACTGCCAGGCCCCACGCACACACTGTGCAGGTTTTT------CCCCGTTTCTGCATGACCACTTCCTCCTGCCCTCAGAGCCCCCACAGGAACTTATACAACCAAATGCACAAATACCATCTGCA----GAAA---------------cccctaaaaagacacatccacagcctgacccccagaacc--tggaaatgaactttgcagatataactgagttaaggatcctgagattaggg a score=0.0 s hg17.chr17_random 1819410 16 + 2618010 gnatgtaatgataaat a score=-540.0 s hg17.chr17_random 1819410 12 + 2618010 gnatgtaatgat s panTro1.chr19 1195152 11 - 82489036 g-atgtaatgat s mm5.chr11 1303133 12 - 121648857 GTAAATTAAATA a score=1226.0 s hg17.chr17_random 1819422 4 + 2618010 aaat s panTro1.chr19 1195163 4 - 82489036 aaat s mm5.chr11 1303145 4 - 121648857 AGGT s rn3.chr10 650998 4 - 110733352 AGGT a score=23586.0 s hg17.chr17_random 1819426 130 + 2618010 cgttctagattatcca---agtggaccctaaatccaatgacaagggtcttcc-tgagacacagagaaaacaggaaaaggccacaagaaatcggaggcangag-----agcaatgcggccacaagccacaga-----acgcttgg--- s panTro1.chr19 1195167 129 - 82489036 cgttctagattatcca---agtggaccctaaatccaatgacaagggtcttcc-tgagacacagagaaaacagggaaaggccacaagaaatcggaggca-gag-----agcaatgcggccacaagccacaga-----acgcttgg--- s mm5.chr11 1303149 109 - 121648857 CACCCTGGACTAACC----AGAGGACCCTAAACCCAGTGACTTGTGTCTTC-------------------------GGGCCGTTTGAAGATCAAGGCA-GAAGTTGTACTGATGCAGTCACAAGCCAAGAA-----ATACCAGG--- s rn3.chr10 651002 113 - 110733352 CACCCTGGGCTAACCAACCAGAGGACCCTAAACCCAGCGACTTGTGTCTTCC--------------GACCATTTGAAGACCA-----------AAACA-AAGGTTATAGTGATGCAGTCACAAGCCAAGGA-----ATGCCTGG--- s canFam1.chr18 35711989 115 - 66173745 catcctggatttg------ggtgggccctaattccaatgacaagtgtcttacaggagaca------gaagaggaaaaaacaa--------------ca-cag-----aggtaggcggcctcgtgaggatgagatagaggctcagtga a score=6670.0 s hg17.chr17_random 1819556 51 + 2618010 agccatgagaagctggaagaggcaggagggat--tctcccttagggcatttgg s panTro1.chr19 1195296 51 - 82489036 agccatgagaagctggaagaggcaggagggat--tctcccttagggcatttgg s mm5.chr11 1303438 53 - 121648857 ATCTGGGGGCGGTTGGGGGGGGGGGGTGGCACAACCATACTCTGGGCACTTTG s rn3.chr10 651117 45 - 110733352 AGCC---AGAGCTTTAAAGTGATAAGA---CC--TCTTCCCTAGAACACTCAA s canFam1.chr18 35712104 46 - 66173745 agccaccagaagctggaagtgataagg----c--cctctcctagagtcttgg- a score=1651.0 s hg17.chr17_random 1819607 31 + 2618010 agagangtgtggccctgcca-----aggccttgggt s panTro1.chr19 1195347 30 - 82489036 agaga-gtgtggccctgcca-----aggccttgggt s mm5.chr11 1303491 8 - 121648857 ----------GACTTTGC------------------ s canFam1.chr18 35712150 35 - 66173745 aggga-gtgtggccctgccacacctcgaCCTGGGGT a score=82529.0 s hg17.chr17_random 1819638 391 + 2618010 ctccagagttgggagggaatatatgactgtt---taaaaccacc--TGGGGGCTTTTCCAAGTGAGAGCCAGTATGTTCAGGGGGCAGGGGCACAGATATACTCAGAC-------CCTGCTGCTGAGCTGGAGCAAACTCACTTCAGATCATATTCACAGGGGTTGAAGTCCTGCCGCCGGCACGTGTCCTCCAGAACCTGGGGGTGAGATGAAAGGATGGTGAA--------CTGCTGAG--------TG--TGCAGGGCTGGCGGGCGCAGTGGGC--CAGGTCAGCCAAGGGCATTCAGCTTCCTGGTGAGCCAGGTGGCTCTGCCCAGGCAAAGCCAAGCACAAGACCACACTATGGACGGTCCCCGCAACAAATGCAGGCTCTCACCTGCAAATNCCTGTCCACTCTCCC--TCCCTTCT--- s panTro1.chr19 1195377 390 - 82489036 ctccagacttgggagggaatatatgactgtt---taaaaccacc--TGGGGGCTTTTCCAAGTGAGAGCCAGTATGTTCAGGGGGCAGGGGCACAGATATACTCAGAC-------CCTGCTGCTGAGCTGGAGCAAACTCACTTCAGATCATATTCACAGGGGTTGAAGTCCTGCCGCCGGCACGTGTCCTCCAGAACCTGGGGGTGAGATGAAAGGATGGTGAA--------CTGCTGAG--------TG--TGCAGGGCTGGCAGGCGCAGTGGGC--CAGGTCAGCCAAGGGCACTCAGCTTCCTGGTGAGCCAGGTGGCTCTGCCCAGGCAAAGCCAAGCACAAGACCACACTATGGACGGTCCCCGCAACAAGTGCAGGCTCTCACCTGCAAAT-CCTGTCCACTCTCCC--TCCCTTCC--- s mm5.chr11 1303499 316 - 121648857 CTTCAGAACTGGGCAAGGATAAACTTCTGTTGTATTAAAGTACCTATGGGGGCGCTTCTAAGGCAGAGATAGTATGTGTTGAGA--AAAGGACCAGGTAGACTGAGAA------GCCCACAGCTGAGTCCAAGCAAACTCACTTCAGGTCGTATTCACTGGGGTTGAAGTCTTGCCGCCGGCATGTGTCTTCTAGTACCT----GTGGGACAAATGATCGGTAAAACCTACCTCAACTGA---------------------TAGTAGGCGCACT-GGC--CAGCCCACCAAA-------CATCTCACTCACCAGC------------TCCAAGCAAA--------------------------------------------------CTACATGCAAAT-CCTGTCTACTCTCTC---CCCTCCT--- s rn3.chr10 651339 308 - 110733352 CTCCAGAACTGGGCAAGAATAAACTTCTTTTGATTTAAACTACC--------------CCAGGGAGAGACAGTATGTGGATGAAG-AAAGGACCAGGTGGACTGAGAATGAGAAGCACACAGCTGAGTCCAAGCAAACTCACTTCAGGTCATATTCACTGGGGTTGAAGTCCTGCCGCCGGCATGTGTCTTCTAGTACCT----ATGGGACAAATGGTCAGTGAA----------ACCTA---------------------TGTCGATCTCAACTGGTCACAGGTCAGCCCA------------------------------------CCAAACAG-----------------CCCAACTCACTGTCCAAGCAAACTGT----------ACATGCAAAA-CCTGTCTATTCTCCC---CCTTCCT--- s canFam1.chr18 35712185 331 - 66173745 --------TTCCGTGAGACAACACACTTGTTGGTTTAAGCCCCC---------------------AGGCCGG--------------GGAGGGGTGGACGGACTTGGAT-------CCT-------------AGCAAACTCACTTCAGATCGTATTCGCTGGGGTTGAAGTCCTGCCGCCGGCATGTGTCCTCCAGAACCTAGGAGTCAGACGACAGGACGGTGAG--------CCACTGTGGCCTGGCCTGGTCGCTGGGTTGGCAGGCACAGA-GTC--CA--------------------CCTCTTGGTGAACTAACTGGCTTTG-CCAGACCAGGCCTAGTACAAG-CCACACAATGGACTGTCCACCCGACAGATCCACACCCTCCGCTGCAACT-CCCAGGCTCTCGGCCTGTCCTCGCTGGG a score=-3002.0 s hg17.chr17_random 1820029 115 + 2618010 TN-CACCATCCCCTCAGTTTTGTAGGAAAGCTCCACTCAGAGTTCC---CCTGCAGTACAGCAACACGGGCATCTTCCTGG-CACACAC-CCTGGGCTCT--CCTTCAAACCCTGTAGTTCTG s panTro1.chr19 1195767 114 - 82489036 T--CACCATCCCCTCAGTTTTGTAGGAAAGTTCCACTCAGAGTTCC---CCTGCAGTACGGAAACACGGGCATCTTCCTGG-CACACAC-CCTGGGCTCT--CCTTCAAACCCTGTAGTTCTG s rn3.chr10 651647 87 - 110733352 ----ATTGTGGACCCATCACTG------------ACTTA---CTCC---CCCA-ACTACGGCCCAGCCTGTCCATCCCTGGTCCCATGT-TCTAGCCTCTGGCCATAAA------TA------ s canFam1.chr18 35712516 86 - 66173745 -GCCGCCGTGCCCACCGCCCC-----------CCGCCCCGTGCCCCGTGCCTGCAGGACAGGACAGC--------CCACGGCCACAGACGCCCCAACACA--CCTTTG--------------- a score=11159.0 s hg17.chr17_random 1820144 102 + 2618010 CAACCTGCCTTA-------AACTTGCCTAGCACAAGCTACCCCCTGGCTCTGGCACGGTTCTGTGCACCTGCTGCCACTGCCTGCACCGCCTCCGCCCCTCTTCTCCAT s panTro1.chr19 1195881 102 - 82489036 CAACCTGCCTTA-------AACTTGCCCAGCACAAGCTACCCCCTGGCTCTGGCACGGTTCTGTGCACCTGCTCCCACTGCCTGCACCGCCTCCGCCCCTCTTCTCCAT s mm5.chr11 1303914 91 - 121648857 TAATCTGCCTTACTG----AACTTTGTGTCCAC-GGCCACTCTGTGGC-CCGGCA-GTCTTTGTGCAACTGCTG-CATGACCAGAA----------CCCTCCTCTACAT s rn3.chr10 651734 95 - 110733352 TAATCTGCCTTACGGGGACCAGTTTGTGTCCAT-GGCCACTCTGTGGC-CTGGCA-GTCTTTGTGCAACAGCTG-TATGACCAGAG----------CCCTCCTCTACAT s canFam1.chr18 35712602 57 - 66173745 ------------------GGACCCAGTCCCCAC-------------GCACGGGGA-G------------------AGTTGTCTGCAGTGCTTCC--CCGTCCTCTCCAC a score=-1003.0 s hg17.chr17_random 1820246 104 + 2618010 AAAAAGCCAAAGCC---GTGGCCTTGCACCAAGGGGTCCCGCGCAGCCTC----TGCGGGAGCGCCCCACTTCCGCACTCTGCACG--CCTGGCACCAACAGCCTCCTGGCTG s panTro1.chr19 1195983 101 - 82489036 ---AAGCCAAAGCC---GTGGCCTTGCACCAAGGGGTCCCACGCAGCCTC----TGCGGGAGCGCCCCACTTCCGCACTCTGCACG--CCTGGCACCAACAGCCTCCTGGCTG s mm5.chr11 1304005 48 - 121648857 ---GAG-----------------------------------CGCAGCTCC----AAATGGAG-----------GTCACTCTGTATGGCCCTGCCACAGATA------------ s rn3.chr10 651829 86 - 110733352 ---GAGCGCAGCTCCAAATGGGTCCTTCCAAAGGGCTATGGGGCTGGTGTTAGGTATGGCAGAACCTCATTTTTGAACTGGGTTCC--CCT---------------------- a score=7480.0 s hg17.chr17_random 1820350 83 + 2618010 CGCCCTCCACCTGCCCAGGCCTGGGGACCCCACGCCGTGGGCTGCTCCCGCAAACTCCGAGTCGTGTGCACCTTCGGATCCTC s panTro1.chr19 1196084 83 - 82489036 CGCCCTCCACCTGCCCAGGCCTGGCGACCCCACGCCGTGGGCTGCTCCCGCAAACTCCGAGTCGTGTGCACCTTCGGATCCTC s mm5.chr11 1304053 26 - 121648857 ---------------------------------------------------------TGAATCGTGTACGCCTTTGTAACCTA s rn3.chr10 651915 55 - 110733352 ---------------------------CTTCACCCTGTGTGCTCTTGCCACAGATA-TGTATCGTGTACGCCTCTGCAACCTA s canFam1.chr18 35712659 58 - 66173745 CGGCCGCCACCG---------------CCCCACCCTGGGGGCCGCTCC---------CGGGACGCA-GCAGCCCCGGGACCGC a score=7296.0 s hg17.chr17_random 1820433 34 + 2618010 ACGGTCCCCCACGCAGCAGAGGCTCAATAAATAC s panTro1.chr19 1196167 34 - 82489036 ACGGTCCCCCACGCAGCAGAGGCTCAATAAATAC s mm5.chr11 1304079 22 - 121648857 A------------CAACAGAGGTTTAATAAGCAG s rn3.chr10 651970 22 - 110733352 A------------CAACAGAGGTTTAATAAACAG a score=28383.0 s hg17.chr17_random 1820467 314 + 2618010 -----tttttttttttttttttgatatggagtctcgctctgtctcccaggctggagtgcagtagcgcgatctcggctcactgcaagctctgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaaatttttttgta-tttttttagtacagacggggtttcaccgttttagccaggatggtcttgatctcttgacctcgtgatccacccgcctcggcatcccacagtgctgggatttacaggcgtgagccaccgcgcccagccAATACTTTTAC s panTro1.chr19 1196201 320 - 82489036 ttttttttttttttttttttttgagacggagtctccttctgtctcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccggctaaatttttttgtattttttttagtacagacggggtttcaccgttttagccaggatggtcttgatctcttgacctcgtgatccacccgcctcggcctcccacagtgctgggatttacaggcgtgagccaccgcgcccagccAATACTTTTAC a score=5848.0 s hg17.chr17_random 1820781 18 + 2618010 ATTTAATTGATTCGCGGT s panTro1.chr19 1196521 18 - 82489036 ATTTAATTGATTCGCGGT s mm5.chr11 1304101 18 - 121648857 GTGTAATTCATACGAGGT s rn3.chr10 651992 18 - 110733352 GTGTAATTCATACGAAGT a score=85432.0 s hg17.chr17_random 1820799 496 + 2618010 CACAAGGTGCCCAAGTAAAAGTGCAGTGAGTGACTCGGCAAAAATCGCTTCCAGGCCCCACGGCCGGGACATCTGCCACCGCGCAAC----CCGGGCTCCC--GCTCCGGGGGACGCCCCGGAAT---------GGGAACGCGGGTCTAGGGCTCCACTCCTCCCTCTTCCCGGCGCCCTCGCGAGCTGGGCTCGGCCGGGCGC-------CGAGTACTN-GATGCGGGTGACACGCGGCGCCGT--------TCTACCTCACC------CCTGGNAAGGCNNNNNNNNCNNCNNGNNNNNNCTCNNNNNNNNCNGGGACCCCCNGGAN------------------CCCAGCNGGAAGCGCAGGTGACGNCGAGC-AGGGGGCGGGGC---NCGCCNCT-CAGGAGGCCGCTCATTGGCCGCCG-AGGCCCCGCCCCCGAA--------CACCGGGACGC-------------------------CGACCGCAATgggcggggcctcggcgcagcgccccc-cgcccgc--------ctacccgtccgc----------cccgggcgggcggccgcACCTGAAGCAGCACGGTGCTCGGCGTCACCTT s panTro1.chr19 1196539 480 - 82489036 CACAAGGTGCCCAAGTAAAAGTGCAGTGAGTGACTCGGCAAAAATCGCTTCCAGGCCCCACGGCCGGGACATCTGCCACCGCGCAAC----CCGGGCTCCC--GCTCCGGGGGACGCCCCGGAAT---------GGGAACGCGGGTCTAGGGCTCCACTCTTCCCTCTTCCCGGCGCCCTCGCGAGCTGGGCTCGGCCGGGCGC-------CGAGTACTC-GATGCGGGTGACACGCGGTGCCGT--------TCTACCTCACC------CCTGGGAAGGC-TCGCCACCGCCCCGCCCCCACTC----------GGGACCCCCGGGAC------------------CCCAGC-GGAAGCGCAGGTGACCGCGAGC-AGGGGGCGGGGC----CGCCGCT-CAGGAGGCCGCTCATTGGCCGCCG-AGGCCCCGCCCCCGAA--------CACCGGGACGC-------------------------CGACCGCAGTGGGCGGGGCCTCGGCGCAGCGCCCCC-CGCCAG---------CTACCCGTCCGC----------CCCGGGCCAGCGTTCGCA-CTG-AGCAGCACGGTGCTCGGCGTCACCTT s mm5.chr11 1304119 469 - 121648857 CACAAACAGCAACAATCAAAA-GCCGTGAGTGACTTAGCAAAATTCACTTCCGGG-----------------------------AAC----ACAGGCCCTAGGGTCCGGAGGGACGCCCCTGAGCTGAGCAGGAAGGAACGC--------------------CACTCTTCCCGGTGACCGAGAAGGCTGGATTCGGACAAGCGC-------CGAAGATTCTGGGGCTCGCAAGGCTCGACCCTGTTAGTGGGGTCCACCCCACC----GTGCTCAGCAAAC----------------------------------GCGCCTCCAAGTAT------------------CCCGCC---CCGCCCCCGGGACCCAGATCTAGAGGATGGGGCGGACAGCCGCG-CGAAAGG-CGCTCATTGGCTGCCTCAGGCCCCGCC--------------CACCGGGACCCGGTCCCGCCCTACCGCCCTAGGAG-CAACCGCAG-GGGCGGGCCCT-GATGCGGCGACCCC-GGGCGGCCCGCGGGTCCACCCATCCGCCCGTTCCCCACCCGGGCCGGCGGCCGCACCTGCAGCAGCACGGTGCTCGGCGTCACCTT s rn3.chr10 652010 478 - 110733352 CACAAGCAGCAACAATCAAAA-GCAGTGAATGACTTAGCAAAATTCACTTCCGGG-----------------------------AACACAAACAGGCCCTAGGGTCCCTGAG-------CTGAGC-----AGGAAGGAACGC--------------------CACTCTTCCCGGAGACCCAGAAGGCTGGATTCGGACAAGCAC-------CGAAGATTCTGGGTCTCGCGTGGCGCGACCCTGTTAGTGGGGTGCACGGCCCCCGCAGTACTCAGGAACC----------------------------------GCGCCTCCCAGTATCCCGCCCCGCCCCCGGGACCCAGC-CCGAACATTAGCGCC--------AGAGGATGGGGCGGGCAGCCGCG-CGAAAGT-CGCTCATTGGCTGCCTCAGGCCCCGCCCATCGA--------GGCCCGGCCCC------GCCCCGCCGCCCTGGGAG-CAACCGCAG-GGGCGGACCCT-GGCGCGCCGACCCCTGGGCAGTCCGCTGGTCCACCCGTCCGCCCATTTCCCACCCGGGGCAGCGGCCGCACCTGCAGCAGCACGGTGCTCGGCGTCACCTT s canFam1.chr18 35712738 381 - 66173745 CAACAGCTGCCCCGGAGAAAGTGCAGCGAGTGACTCAGCAAA--TAGTCTCCAGGCGCCAAGGCCG------------------TAC----------------GCGCAGTGG----ACCCCGGGC---------GGGCACAC--------------------AGCTC------GGGGCTCGGCAG--TGGACTCGGCGGGGTGCACGGAGGCGCGGACCCCGACCCCCGC-CGGCGCGACCCCAG---------------CCCC---------------GC----------------------------------AGGGTCCCGCGGAG------------------CCCGGG-GGCCGGGAGCCCGGCACGGA---AAGGGGCGGGCC----CGCCGCGCCACGAGGCCGTTCATTggccgccgcaggccccgcccccgcaggccccgcccccgcggccc-----------------TCGGGAGCCAACCGCAG-GCGCG--------------CGCCCCT-cgccg----------ccgcc--gccgc----------cgccgccc-----ccgTACCTGCAGCAGCACGGTGCTCGGCGTCACCTT a score=65018.0 s hg17.chr17_random 1821295 227 + 2618010 CACCGTGTGGCGCCGGCCGTTCGGGGCCAGCACCGACACCGCGGAGCCTCCGCCGCCTGCCGGGNCNGNNNNNNNNNNNNCANNTNNCNCNNNNCCG-------------GGCCG-GCGTCAAACAACTTTATCGGCAACAGNCAGGACGCGCAGCCACGCGG--------------CCAGGGGGCGGGNCCGCAGCGCACTTCCGGGTCCTGCCAGGCCCCGCCCTTTCCCCACCCACGGCGCCCNGGCNCCGC s mm5.chr11 1304588 202 - 121648857 CACCGTGTGGCGCCGCCCGTTTGGGGCCAGCACCGACACCGCGGAGCCCCCGCCGCCCGCCGGGGCCG-----------CCATCTTCCGCTCACGTGA----CCGCAGCCGGCTC-GCCTCAAACAACTTTATCCGCAACAGCCCGGACGCACAGCCACGCGG-------------TCTCGGGGGCGGGGC--CAACTCGCTTCCGGG----------------------CCCGCCCCCGGCGCTCTGGCTCTGC s rn3.chr10 652488 214 - 110733352 CACCGTGTGGCGCCGCCCGTTTGGGGCCAGCACCGACACCGCGGAGCCCCCGCCGCCCGCCGGGGCCG-----------CCATCTTCCGCTCACGTGA----CCGCAGCCGGCTC-GCCTCAAACAACTTTATCCGCAACAGCCCGGACGCACGGCCACGCGG-------------CCTCGAGGGCGGGGC--TAACTCGCTTCCGGGCCCGCCCCAGAC----------TCCGCCCCCGGCGCCTTGGCTCTGC s canFam1.chr18 35713119 236 - 66173745 CACCGTGTGGCGCCGCCCGTTCGGGGCCAGCACCGACACCGCGGAGCCCCCGCCGCCACCCGGGGCCG-----------CCATCTTCCGCTCACGTGACCCGCCGCCGCCGGCTCGGCGTCAAACCACTTTCTCGCTAACAGCCGGGACGCAGAGCCACGCGGGGGCGGGGCGGGTTCTGAGGGGCGGGGCGCGCGCGCGCTTCCGTTcccgcccccagcctggc-----cccgcccccagc---ctggccccgc a score=105.0 s hg17.chr17_random 1821522 3 + 2618010 CCT s mm5.chr11 1304790 3 - 121648857 TTT s canFam1.chr18 35713355 3 - 66173745 ccc a score=-1535.0 s hg17.chr17_random 1821522 17 + 2618010 ------CCTTGGGCCGCCAAAGC s rn3.chr10 652702 11 - 110733352 ------------GTTGCTGAGAC s canFam1.chr18 35713355 17 - 66173745 ccccagcctggccccgc------ a score=-1004.0 s hg17.chr17_random 1821539 14 + 2618010 CCGCGCCAGACCCG----- s panTro1.chr19 1197263 14 - 82489036 CCGCGCCAGACCCG----- s rn3.chr10 652715 9 - 110733352 TGGCG-----TCCC----- s canFam1.chr18 35713372 14 - 66173745 -----cccgccccgACGCG a score=2838.0 s hg17.chr17_random 1821553 12 + 2618010 GAAAGCGCGGTC s panTro1.chr19 1197277 12 - 82489036 GAAAGCGCGGTC s rn3.chr10 652724 12 - 110733352 GACGGCGCGGTC a score=90361.0 s hg17.chr17_random 1821565 969 + 2618010 GTCCTCTGCCTCCGGGAAGCGCGGCTTGGATGGGCTCGCCGGGGCCAGGCTGGGCCGGGGCTGGGCGCGCGGTCACCCCCGGTGAGCGGCACTGAGCCCNGGGGTCCCAGCGGTNCGCGCTCGCCCACNCTCGCTTCGTCCCTGACACGTCCCCAGCTCGGTGCCCTGCTCTCCCCCGACCCTCCCGGCTTCCTCCACTCCAGCAGCTGAGCCTCTTCCCTGCCCACCTGTCCCTGTGGTCAGCGTCCACCTCCTGACCTTATGGTTTGGGGCAGTCCCCCCGCCCCTGTACGGATCCTCCCTGGGTGTTGGGACTCGTGGCCCTCAGTCTAGACCTGATTTCTTTCATCCTAAAATGGGAGTGCAGAATCTGGCAGCCCTAGGGCTGCCGCGACGGTCCCTAAACCTGAGGGTAGGAAAGGCGGGAGACCGGTTTCAGAACCGTGGGGTGAGCGAACTTGAGTCTCACCGGAGCTCCTGCCGACCCACAGGCACTCAAGGACTTCCCGCACCAACCCATGCTGAGGAGGGGCTTGGTGGCAGCCTCAGGAAACACTCCCATCGCCAGCCACCGCAGCAGGGAAAGCACCTGGCCTCACCAGCTCCAGGCTTCCAGAAGGAGCTGCCCTCCTGACTCGCAGCCGTCGAATGTGCTTAGCTCCCAGCACCTGGGCCACTCATGGACAGCACTCGCACGTGTTCCGCCCCGCCCCCCACCTCCATGGCTCAGCCGGGCCTTGGCACTCCTCTCTCCATGTGCCTGCCNTGTCTCTGCGGACTCCTGGCTAGGGCTCAGCTGCCCAGTAGCCTGTGGAAGGGGGAACTGGTGCAGTTATCAGTCAATcctcccacagggctgggattacacacgtgagccaccgcacccggcAGTCATTGCTGAGTCTAAGGACATCTCTGCATGGGTGCTGTTGTGCCTTCCTGTCGATGACATATNCCATGTCACCCACA s panTro1.chr19 1197289 967 - 82489036 GTCCTCTGCCTCCGGGAAGCGCGGCTTGGATGGGCTCGCCGGGGCCAGGCTGGGCCGGGGCTGGGCGCGCGGTCACCCCCGGTGAGCGGCACTGAGCCCCGGGGTCCCAGCGGTCCGCGCTCGCCCACCCTCGCTTCGTCCCTGACACGTCCCCAGCTCGGTGCCCTGCTCTCCCCCGACCCTCCCTGCTTCCTCCACTCCAGCAGCTGAGCCTCTTCCCTGCCCACCTTTCCCTGAGGTCAGCGTCCACCTCCTGACCTTATGGTTTGGGGCAGTCCCCCCGCCCCTGTACGGATCCTCCCTGGGTGTTGGGGCTCGTGGCCCTCAGTCTAGACCTGATTTCTTTCATCCTAAAATGGGAGTGCAGAATCTGGCAGCCCTAGGGCTGCTGCGACGGTCCCTAAACCTGAGGGTAGGAAAGGCGGGAGACCGGTTTCAGAACCGTGGGGTGAGCGAACTTGAGTCTCACCGGAGCTCCTGCCGACCCACAGGCACTCAAGGACTTCCCGCACCAACCCATGCTGAGGAGGGGCTTGGTGGAAGCCTCAGGAAACACTCCCATCGCCAGCCACCGCAGCAGGGAAAGCACCTGGCCTCACCAGCTCCAGGCTTCCAGAAGGAGCTGCCCTCCTGACTCGCAGCCGTCGAATGTGCTTAGCTCCCAGCACCTGGGCCACTCATGGACAGCACTTGCACCTGTTCCGCCCCGCCCCCCACCTCCATGGCTCAGCCGGGCCTTGGCACTCCTCTCTCCATGTGCCTGCC-TGTCTCTGCGGACTCCTGGCCAGGGCTCAGCTGCACAGTAGCCTGTGGAAGGGGGAACTGGTGCAGTTATCAGTCAATcctcccacagggctgggattacacacgtgagccaccgcacccggcAGTCATTGCTGAGTCTAAGGACATCTCTGCATGGGTGCTGTTGTGCCTTCCTGTCGATGACATAT-CCATGTCACCCACA a score=9869.0 s hg17.chr17_random 1822534 99 + 2618010 CACACCTGTATGCTGACAAACACGGACATCTATGTACATT-GGAGAAACCTGGGGAAAGCCCCAGGCTAGCCATAGCCCTCCCATCCAGCCAGCCAGTCC s panTro1.chr19 1198256 99 - 82489036 CACACCTGTATGCTGACAAACACGGACATCTATGTACATT-GAAGAAACCTGGGGAAGGCCCCAGGCTAGCCACAGCCCTCCCATCCAGCCAGCCAGTCC s rn3.chr10 653476 62 - 110733352 CACCCCTGTGTGTTGACAATCATGGGCACCTCC-TACATGAGAAAAAACATGTGGCAAGTTTA------------------------------------- a score=16865.0 s hg17.chr17_random 1822633 41 + 2618010 CATGCTCTGTGCAACCTCAGAACCTTACTGAGCCACACATC s panTro1.chr19 1198355 41 - 82489036 CATGCTCTGTGCAACCTCAGAGCCTTACTGAGCCACACATC s mm5.chr11 1305637 41 - 121648857 CGTGTTCTATGCAACCTTAGACCCTCACTGTGCTGCCCACC s rn3.chr10 653538 41 - 110733352 CATGTTCTGTGCAACCTTAGACCCTCACTGAGCTGTGCACC a score=2066.0 s hg17.chr17_random 1822674 22 + 2618010 ACCTGGTG--------GGTTTTAATTCTTT s panTro1.chr19 1198396 22 - 82489036 ACCTGGTG--------GGTTTTAATTCTTT s mm5.chr11 1305678 30 - 121648857 TTCCCGGGTCCCCTTTGGTTTTCTTCCTTT a score=2374.0 s hg17.chr17_random 1822696 25 + 2618010 AGTGGCGTTTTTGAAGAGTCTGTTC s panTro1.chr19 1198418 25 - 82489036 AGTGGCGTTTTTGAAGAGTCTGTTC a score=100.0 s hg17.chr17_random 1822720 1 + 2618010 C s rn3.chr10 653649 1 - 110733352 C a score=59459.0 s hg17.chr17_random 1822721 288 + 2618010 CTATTTTCCTTAGACTGTCCCACAGTCTGGATCCT-TGGTTAAACGTTTGGGGCAATG-ATGAAGGGAGGTGACAAGTCAGcaggaggtgcaggacatcagcgtggccatgagtgaggacgtgaagttgaaccact--tggtcagctttgggtc--tgctgaattcctccatggtcaaggtccgtggctccttgtggagtaattaaggcatgcgtgaggtcattctctgagaccacaagcatcaagtt------------ttcccaataaccatttgcc---caacagttttagcatcagttaatgagt s panTro1.chr19 1198443 288 - 82489036 CTATTTTCCTTAGACTGTCCCACAGTCTGGATCCT-TGGTTAAACGTTTGGGGCAATG-ATGAAGGGAGGTGACAAGTCAGcaggaggtgcaggacatcagcgtggccatgagtgaggacgtgaagttgaaccact--tggtcaactttgggtc--tgctaaattcctccatggtcaaggtcccttgctccttgtagagtaattaaggcatgcgtgaggtcattctctgagaccacaagcatcaagtt------------ttcccaataaccatttgcc---caacagttttagcatcagttaatgagt s mm5.chr11 1305756 292 - 121648857 CTGTTTTCTTTCAACTGTCCCACTGTTAGAATCCTCTGGCAGAACATTTAGAGAGGTGCAGTGAGAAAAATGGACAGCCATCAAGAGATACAGATTGTT-------CTGAAAGTGAGCATGTGAAATTTGACCA----TGGTCAGGCTCAAGTTAAAGTCGGAATCCTCCATAATCAAGGTCCCTCTTTCCTTGGGTAGTAAATTAGTCAGCTATAGGCTAATTCTTTAAGACTACAA-TGCCATGTTTTTTTTTTTTTCTTCCCA-----CATTTATTATGCAACAGTTTTAACACCAATTGATGAAT s rn3.chr10 653650 238 - 110733352 CTGTTTTCTTTCAACGGTCCCACAGTTAGAATTCTGTCGTAGAACATTTAGAGAGGTGTAGTGAGGAAA-----------------------------------------AAATGAGTGCATGAAATTTGACCACTTATGGTC----TCAAGTT-------AAAGTGACCAT--TCAAAGTCCCTC-TTCTTCGGGTAGTAAATAAGTCAGCTGTGGGCTAATTCTTTAAGACGACAA-GACCGGATTTT----------TCCCCA-----CATTTATTATGCAACAGTTTTAACACCAATTGATAAAT a score=680.0 s hg17.chr17_random 1823009 6 + 2618010 agattc s panTro1.chr19 1198731 6 - 82489036 agattc s mm5.chr11 1306048 6 - 121648857 GAGTTT a score=732.0 s hg17.chr17_random 1823015 10 + 2618010 agtgttaaac s panTro1.chr19 1198737 10 - 82489036 agtgttacac a score=7770.0 s hg17.chr17_random 1823025 45 + 2618010 cgtaaagctgcaaaatcatggcttcccaagtttattgtttcttct s panTro1.chr19 1198747 45 - 82489036 cgtaaagctgcaaaatcatggcttcccaagtttattgtttcttct s rn3.chr10 654492 45 - 110733352 CTTATGACTGCAAAATCATGACTTTCAGAACCTATCATCCCACCT a score=43442.0 s hg17.chr17_random 1823070 486 + 2618010 acatttatagtcactttcggtcaagcttccccttctTTAAAAAGTTATTAAAtatttgggnaggctgaggcaggagaatggcgtgaatccgggaggcagagctcgcagtgagctgagatcacgccactgtactccagcctgggagacggagcaagactctgtctc---aaaaaaaaaaaaaaaaaaaaaaTTAAATATggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggctgagttgggcagatcacaaggtcaagagattgagaccatcttggccaacatggtgaaatcctgtctctacttaaaaaaaaagtacaaaaattagccgggcatggcggtgcgtgcctgtaatcccagctattcgggacactgaggtaggagaatcacttgaacctgggagatggaggttgcaacgagccaagatcgcaccattgcactccagcctgggcgacaagagtgaaaccccatcttgaaa s panTro1.chr19 1198792 488 - 82489036 acatttatagtcactttcggtcaagcttccccttctTTAGAAAGTTATTAAAtatttggg-aggctgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagctgagatcacgccactgtactccagcctgggagacggagcaagactcagtctcaaaaaaaaaaaaaaaaaaaaaaaaaTTAAATATggccaggcgcagtggctcacgcctgtaatcccagcactttgggaggctcagttgggcagatcacaaggtcaagagatcgagaccatcttggccaacatggtgaaatcctgtctctactttaaaaataagtacaaaaattagccgggcatggcggtgcgtgcctgtaatcccagctattcaggacactgaggtaggagaatcacttgaacctgggagatggaggttgcaacgagccaagatcgcaccattgcactccagcctgggcgacaagagtgaaactccatctcgaaa a score=3441.0 s hg17.chr17_random 1823556 22 + 2618010 Tatatatatttattaatatgaa s panTro1.chr19 1199280 22 - 82489036 TATATATAtttattaatatgaa s rn3.chr10 654809 22 - 110733352 GATTCCTATATATTAAAGTGAA a score=684.0 s hg17.chr17_random 1823578 3 + 2618010 ttc s panTro1.chr19 1199302 3 - 82489036 tta s mm5.chr11 1307132 3 - 121648857 CTC s rn3.chr10 654831 3 - 110733352 TTC a score=26630.0 s hg17.chr17_random 1823581 100 + 2618010 atgtatttttttcattcagtc----------------agcattctt--------------tttgatgctcaaattggtccgaatttggccagtgagacctcctttaagctggctcctatgctttttttga s panTro1.chr19 1199305 100 - 82489036 atgtattgttttcattcagtc----------------agcattctt--------------tttgatgctcaaattggtctgaatttggccagtgagtcctcctttaagctggctcctatgcttttttCGA s mm5.chr11 1307135 117 - 121648857 ATGCCTTTTTTTTTTTCCATT-TCATTGTAGGGTTTGAGTATTGTT------------TCTTTCGTGCTTAAATTGACCTAAATTTAGTCATTATGACTGCCTTCACGCTGGCTGCTGTGCTTCTTGTGA s rn3.chr10 655072 130 - 110733352 ATGTCTTTTTTTCATTTCACTCTGGGTTTAGGTTTTTGTTGTTTTTTTGTTTTTGCTTTTTTTCATGCTCAAATTGATCTAAACTTAGTCATTATGACTGCCTTCCTGCTGGCTGCTAAGCTTCTTGTGA a score=69395.0 s hg17.chr17_random 1823681 815 + 2618010 taGGANGGGATGATCTTTTATCCTGATATTATTTCAAACTTAgccgagcaaggtggctcacacctgtagtcttagctactccggtggccgaggcaggagaattacttaagttccagccttagtgaaccactattcatgcctatgaataactactgcaccccagcccgagcaacgtagtacgataccgtctcaaaaaaggagaaggagaaGAAAGAAGAAGAGGGAGGAGGAAGGAAGAAAGAGAAGAAAAGTTTGCAAAAGCAAGAATTCCTGCTGTATAtctttttttttttttttttttttnggagantggagtctccctctgtcgccaggctggagtgcagtggcgaaatctcagctcactgcaacctctgcctcccgggntcaagcgattcttctgcctcagcctcccgagtagctgggactacaggtgtgcagcaccacacccagctagttGttgttttgttttgttttgntttttgagacggagtctcgctctgttgcccaggctggagtgcagtggtgcaatctcggctcactgcaagctccgcctcccgggtncacatcattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccatgcccggctaattttttgtatttttagtagacatggggtttcaccatgttagccaggatggtctcaatctcctgacctcgtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtg---agccaccacgcccngncTCCTGTANATCTTTTANCCNGATAAATCNGNGTTTACNTGTCACCCCNTTNGT s panTro1.chr19 1199405 806 - 82489036 TAGGA-GGGATGACCTTTTATCCTGATATTATTTCAAACTTAgccgagcaaggtggctcacacctgtagtcttagctactccggtggccgaggcaggagaattacttaagttccagccttagtgaaccactattcatgcctatgaataactactgcaccccagcccgagcaacgtagtacgataccgtctcaaaaaaggagaaggagaagaaagaagaagagggaggaggatggaagaaagagaagaaaagTTTGCAAAAGCAAGAATTCCTGCTGTATATCttttttttttttttttt-----ggaga-tggagtctccctctgtcgccaggctggagtgcagtggcgaaatctcagctcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggtgtgcagcaccacacccagctaattgttgttttgttttg-tttgttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgcaatctcggcttactgcaagctccgcctcctggggtcacatcattctcctgcctgagcctcccgagtagctgggactacaggcacctgccaccacgcctggctaattttttgtatttttagtagacacggggtttcaccatgttagccaggatggtctcaatctcctgacctcgtgatccacccgcctcagcctcccaaagtgctgggattacaggtgtatacag----cacgcccagcctcctgtatatcttttagccagataaatcagtgtttacatgtcaccccatttgt a score=212989.0 s hg17.chr17_random 1824657 2761 + 2618010 AGctctacaaaaaatacaaaggttanctaggcatggtggcatgtccctgtagtcccagcgatttgagagattgaggcaggaggatcacttgagcccaggaggtcgaggctgcagtaaAGACATTGAGCACCTTCGCCACTAAATACTTCAGTTTTNCTCTTNCCTAAGANNANNNNCNNNNNNNNNNNgnngcagtggctcacgcctgtaatcccagcattttgggagaccaaggcgggtggatcacctgaggtcaggagttcaaaaccagcctggccaacatggtgaaaccnctatctctacaaaaaatacaaaaagtagctgggcgtgatggcaggtgcctgtaattccagctacttgggaggctgaggtgggagaattgcttgattgtgggaggtggaggttacagtgagccaagatcacgccattgcactccagccttggcgacagagtgagactcagtctcaaaaaaataaataaataaaataaGGCCAGTCTCTTATATAGCCACCATAATTTCATACAAAATTGGGAAATCTAATGTTGGTATCATACTCTGAGTTAATCCACAGTTAATTGTCCAAGTGTGGACATCTTTCCTGCATCCTTTTGGCATTTCCATTATTCTTTGGGCATCTCCTCTctgcccnagccctgaagtcagccatttttcagagaaaccccaatcccttttacaaggaaatgggatttagagaccaagttctgggtgctgagtgtgctcatggctactgngatgtcactgctttctgggccctctcaggggacacaattagntgtgatgaattcatctgaatatttctaagccacacctcagccttctcccccttcttccctcattccatatttgtatttGGTTGAATTCTATTAAATTGCCCTAGTTAACCtttttttatcttcttttttttttttttt--gangacggagtctcactctgtca-cccangctggagt-gcagtggcgcaatcttggntnantgcaagctccacntcccaggttncacgcnnttntcctgcntcggncctccngagt-agctggnacta---------cagncaccgnccaccacaccncggnnaattttttgtatttttagtagagacagggtttcaccatgttagccagaatggtctcaatctcnnnnnnnnnngatncgcctgcctcngnctnccnaagtgctnggatnacnngtgtgagccaccgcancNANGCNtnntnnnnnnnnnnnnnnnnnttttttgagacagagtctcgctctattgcccaggctggaatacagtggcacgatctcggctcagtgcaacccccatctcccgggttcaagcgattctccttcctcagcctcctgaatagcttggattacaggcgcttgccaccatgagcagctaatctttgtatttctagtancnatggggtttcactgtggtggccaggctggtcttgaactccagacctcaggtgatcctcccacctcggcctctcaaagtactgggattatagataggcatgagccactgcgcccagccGATCATTTTTGATCTACAAAAAAATGACAAAACCTACATGGTTCAACCTAAtacctcctttgtccgcagtgagaaccctaattgtcagtaaatcagtatatttattcntttgctttgttctaaaatgccctccnaatantttcanaggtactgcggcnatcttgctattaacaacanatctactgtggaaatttcaagatgtctttgtagctatttttgtcctttagagtatgtcccattaaagaaacatagagtattgtgttcaaaagttattngaattaantngcttttctGTGTTANG----------GTNNNNTNNNNNNNNTNNNNNNGTNNNNCNNNNNAACAGAANCNATNGGATATGCNCAGATATATACAANANgancancctggcnaacatnngnanncnnnnnntnnantnnnnanacanaaaatagccgggtgtggtgctgcacacctatagtcgcagctactcgggaggctgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagatcacaccactgtactccagcctgagtgacagagtgagactccatctc-aaaaaaaaaagaggaaaTGtattatgggaattggctcanatgattatagaggctgagaaagaagtcccatggtcggttgtctgcaagcttgagacaggaaaANNAGNNNNTNNNNAACCAGTGNATANCTNNATACTCNAACCAGTGTATANCTCAATACCNNAAACCAGTGTATNACTCANNACATNGGTNTATNATATAATNACANNATANTtnanttnnatccaagtctgcaggtctgagaaccagnggagcgagangtgtaactcccatcctgaagccccagaagtgtaggatgggcggctggtgtaagtcctggagtccaaaagcctgagaagcaggttgcccttctccaatgtccaagggcaggaggatggacgtcccagctcaagaagagagaatgtgtccttcttccacctttttgttctatttgggccctcaactgattggatgattcctgcccgctgtggtgagggtggatcttcttgggccactgatccaaatgctaatttcttccagaaacatccttgaagacatacccagccatgaggttttaccaactctctgggtatcccttagcctggntcaagttgacacatacaattaaccattataGGTAGGTTAGGTCCGTTTAACAATTTGATGCACGGTTAGGT s panTro1.chr19 1200372 2743 - 82489036 agctctacaaaaaatacaaaggttagctaggcatggtggcatgtccctgtagtcccagcgatttgagagattgaggcaggaggatcacttgagcccaggaggtcgaggctgcagtaaagacattgtgcaccttcgccactaaatacttcagtttttctctttcctaagaataaggccagtctcagccaggtgcagtggctcacgcctgtaatcccagcattttgggagaccaaggcgggtggatcacctgaggtcaggagttcaaaaccagcctggccaacatggtgaaacc-ctatctctacaaaaaatacaaaaagtagctgggcgtgatggcaggtgcctataattccagctacttgggaggctgaggtgggagaattgcttgattgtgggaggtggaggttacagtgagccaagatcacgccattgcactccagccttggcgacagagcgagactcagtctcaaaaaaataaataaataaaataaggccagtctcttatatagccaccataatttcatacaaaattgggaaatctaatgttggtatcatactctgagttaatccacagTTAATTGTCCAAGTGTGGACATCTTTCCTGCATccttttggcatttccattattctttgggcatctcctctctgcccaagccctgaagtcagccatttttcagagaaaccccaatcccttttacaaggaaatgggatttagagaccaagttctgggtgctgagtgtgctcatggctactgggatgtcactgctttctgggccctctcaggggacacaattag-tgtgatgaattcatctgaatacttctaagccacacctcagccttctcccccttcttccctcattccatatttgtatttggttgaattctattaaattgccctagttaacctttttttatcttctttttttttttttttttgaagagggagtgtcgctctgtcatcccaggctggagaagcaggggggcaatcttgggtcattgcgagttccccctcccagggttcacaccattctccggcct-ggccctccggagttagcgggga--agcagggggccagccgcc--ccacc------cgggtaattttttgtatttttagtggagacagggtttcgccatgttagccagaatggtctcaatctcctgaccttgtgatccgcctgcttc-gcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagGCttttttt---------------ttttttgagacagagtctcgctctattgcccaggctggaatacagtggcacgatctcggctcaatgcaacccccatctcccaggttcaagcgattctccttcctcagcctcctgaatagcttggattacaggtgcttgccaccatgagcagctaatctttgtatttctagtagtgatggggtttcgctgtggtggccaggctggtcttgaactccagacctcaggtgatcctcccacctcagcctctcaaagtactgggattatagataggcatgagccactgtgcccagccgatcatttttgatctacaaaaaaatgacaaaacctacatggttcaacctaatacctcctttgtccgcagtgagaaccctaattgtcagtaaatcagtatatttattcatttgctttgttctaaaatgccctccaaatagtttcagaggtactgcggcaatcttgctattaacaacagatctactgcggaaatttcaagatgtctttgtagctatttttgtcctttagagtatgtcccattaaagaaacatagagtattgtgttcaaaagttatttgaattaatttgcttttctgtgttaggttaggttagtgta------------ttacagggtcctccagagaaacagaaccaataggatatgcacagatatatacaaga-gaccagcctggccaacatggggaaacctcatctctactgaaaacacaaaaaatagccgggtgtggtgctgcacacctatagtcgcagctactcgggaggctgaggcaggagaatcacttgaacccgggaggtggaggttgcagtgagccgagatcacaccactgtactccagcctgagtgacagagtgagactccatctcgaaaaaaaaaagaggaaatgtattatgggaattggctcaaatgattatagaggctgagaaagaagtcccatggtcggttgtctgcaagcttgagacaggaaaaccagtgaattataaaccagtgtataactgaatactcaaaccagtgtataactcaatacccaaaaccagtgtataactcaatacattggtttataatataattacaatataatttaattcaatccaagtctgcaggtctgagaaccaggggagcgagaggtgtaactcccatcctgaagccccagaagtgtaggatgggcggctggtgtaagtcctggagtccaaaagcttgagaagcaggttgcccttctccaatgtccaagggcaggaggatggacgtcccagctcaagaagagagaatgtgtccttcttccacatttttgttctatttgggccctcaactgattggatgattcctgcccgctgtggtgagggtggatcttcttgggccactgatccaaatgctaatttcttccagaaacatccttgcagacatacccagccatgaggttttaccaactctctgggtatcccttagcctgg-tcaagttgacacatacaattaaccattataggtaggttaggtccatttaacaatttgatgcacggttaggt a score=13959.0 s hg17.chr17_random 1827418 102 + 2618010 TACATTTATTTATTTTGTTTTTTACTAAATTTGGGGTTTTTT-CTTCATCCTTTTTTAT--AGTGCTATATTTTCATTGTTCAAAAGGTTTATTTGATTCAGGTG s panTro1.chr19 1203115 103 - 82489036 tacatttatttattttgttttttactaaatttgggatttttttcttcatcctTTTTTAT--AGTGCTATATTTTCATTGTTCAAAAGGTTTATTTGATTCAGGTG s canFam1.chr18 35718628 93 - 66173745 TAGATTCACTTATTT---------CTGAATCCTGGAGTCGTT-TTTCATCTTTTTTGATTGAATGTTATATTTGGTTAG--CAAAATATTCATGTGATTCAAATG a score=64850.0 s hg17.chr17_random 1827520 816 + 2618010 Cggtacggtgactcacgcctgtaatcccagcactttggaaggccaaaacgggtggatcacctgagttcaggagttcaagaccagcctggccaacatgatgaaacaccacctctactaaaaatacaaaaatcagccgggcgtggtggtgtgtgcctgtcatctcagctactctggaggctgaggcaggagaatctcttgaacccgtgaggtggaggttgcagtgagccgagatggtgccgctgcactcacactccagcctgggtgacagagcaagactccgtctcagaaaaaaaaaaaaaa--aaTCTACATATGTGCCCACCTGGCACCTGacacaggaatttgctcatctttgcaaaaagaaaaacnagcaggctaccctagaagttaacgaaaatggttttctTggccgggcacagtggttcacacctgtaatcccagcactttgggaggccaagatgggcagatcacaaggtcaggagtttgagaccatccggancnacatggtgaaaccccgtatact-aaaatacaaaaattggnccggcgtggnggtgcacanctgnaatcccagntactgaggangctgacacagnagaantgcntgaacccangaggcgnangntgcagtgagccangatancacnactgcannnnnnnnnnnnnannannnnnnnannntgtctc-----aaaaaaaaaaaaaaaTTggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggctgaggtgggtggatcacaaggtcaggagatcgcaaccatcctggctaacatggtgaaagcccgtctctact s panTro1.chr19 1203218 823 - 82489036 gggtgcagtgactcacgcctgtaatcccagcgctttggaaggccaaaatgggtggatcacctgagttcaggagttcaagaccagcctggccaacatgatgaaacaccacctctactaaaaatacaaaaattagccgggcgtggtggtgtgtgcctgtcatctcagctactctggaggctgaggcaggagaacctcttgaacccgtgaggtggaggttgcagtgagccgagatggcgccactgcactggcactccagcctgggcgacagagcaagactccgtctcagaaaaaaaaaaaaaaagaaTCTACATATGTGCCCACCTGGCACCTGacacaggaatttgctcatctttgcaaaaagaaaaacaagcaggctaccctagaagttaacgaaaatggttTTCTTggccgggcacagcggttcacacctgtaatccc-gcactttgggaggccaagatgggcggatcacaaggtcaggagtctgagaccatccggaccaacatggtgaaaccccgtatactaaaaatacaaaaattggcccggcgtggtggtgcacacctgtaatcccagttactgaggaggctgacacaggagaattgcttgaacccaggaggcagaggttgcagtgagccaagatagcaccactgcactccagcctgggcaacagagcgagactctgtctcaaaaaaaaaaaaaaaaaaaaTTggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacaaggtcaggagattgcaaccatcctggctaacacggtgaaagcccgtctctact a score=30927.0 s hg17.chr17_random 1828336 417 + 2618010 aaaaaaaaaatacaaaaaaattagctgggtgtggtggcgggtgcctgtagtcccagctactcaggaggctgacgcaggagaatggtgtgaacccaggaggcagagcctgcagtgagcggagatcgagccactgcaatccagcctgggcaactgagtgagactctgtctcaaaaaaaaaaaaaaaaaattagccaggcgtggtggcgtgtgcctgtagtccaagctactcaggaggctgaggccggagtttgaggctgcagtnnnntntngncnnnannnngcnnnnnnngnnnnnnnacagagcgagactccatctctaaaaagagaaaaaaaagaaaaTGGTTTTCTATGAGGATGAGNGGGAGAAGAAACAGGTCAGGCCATGTCTTTATACTTTGGAATCAAatatatatatat s panTro1.chr19 1204216 414 - 82489036 aaaaaaaaaa---gaaaaaattagccaggcgtggtggcgtgtgcctgtagtccaagctactcaggaggctgacgcaggagaatgatgtgaacccaggaggcggagcctgcagtgagcagagatcgagccgctgcaatccagcctgggcaactgagggagactctgtctcaaaaaaaaaaaaaaaaaaTTAgccaagcgtggtggcgggtgcctgtggtccaagctactcaggaggctgaggccggagtttgaggctgcagtgagctgtgatcacaacactgcactccaggctgggcaacagagcgagactccatctctaaaaagagaaaaaaaagaaAATGGTTTTCTATGAGGATGAGTGGGAGAAGAAACAGGTCAGGCCATGTCTTTATACTTTGGAATCAAatatatatatgt a score=83447.0 s hg17.chr17_random 1828901 913 + 2618010 gtatatatgtatatatatatTTT------gactgagtctcactctgttgcccaggctggagtgcagtggcgtgatcgcggctcaccacaacctccacctcccgggttcaagtgatccgccgacctcagcctcccaaagtgctggaattaccggcgtgagccactgcgcccagccaGATGTAGATTCTTAACCTATCTTCCTCCTTATACAACAGGTGACCACAGGATATCACAGTCTCTTTTGCTGTTATCACTGCAGCCCACCCACGTTTTCAAAGATTTACGCATGACCCCACTCTGCGGCCACCTATGACTCCACTCTTCTCCACCATGCACTAAGTCAAAAGCACAAAGTGCTCACTGCTGGACATTGCATGGGAGGCCACAGTGTCCAGGCGTGGAATGGTCCAGGCACCAGGTCCAGCCCCCTACCTGCACCGAACTGAACTTTGACCTGGTCTGTGCTGGCCTCCAACATAGAGCCTCGCCTGCCCAGGCCTCAGATCCTCACCTGTAGCACCCTCCAGGCAGGTGAGTGGACCCTGACTTGGCACAGGAAGGCCAAGAGGTCATTGCAGGCAGTGAGTCCCCGGTGGGCTGCAGGAAGCCTGAGCCAGGCCAGAAGATGAGTTTGGGTTCCTCCNCCGAAGGCTGCACAAAGTCAATCCCAGGGCTGGCCCAGGCCCTTGCCAGGNCCCACTGAATGCCCAGCACAGGGGCTGTCTTCTGCCTGGCTTTCCTGTCTTCCCTTCCCCTGTCACCCTGTCAGGGAGCTCCTTGAACAGCTACTTTTCAGCATCTGCTTCCTCCAGAAGACAAGCCCTGCAAAGGTGCACCTGCCATCCCGGCCCCATGTCCCCGTGCCTGGGACAGGGCTCAGGCAAATGAATGGGAGGTGGTCAGGGAACCTTCCTGTGGCT s panTro1.chr19 1204630 917 - 82489036 gtatatatatatatatatattttttttttgactgagtctcactctgctgcccaggctggagtgcagtggcgtgatcgcggctcaccacaacctccacctcccgggttcaagtgatccgccgacctcagcctcccaaagtgctggaattaccggcgtgagccactgcgcccagcCAGATGTAGATTCTTAACCTACCTTCCTCCTTATACAACAGGTGACCACAGGATATCACAGTCTCTTTTGCTGTTATCACTGCAGCCCACCCACGTTTTCAAAGATTTACGCATGACCCCACTCTGCGGCCACCTATGACTCCACTCTTCTCCACCATGCACTAAGTCAAAAGCACAAAGTGCTCACTGCTGGACACTGCGTGGGAGGTCACAGTGTCCGGGCGTGGAATGGTCCAGGCACCAGGTCCAGCCCCCTACCCGCACCGAAATGAACTTTGACCTGGTCTGTGCTGGCCTCCAACATAGAGCCTCGCCTGCCCGGGCCTCAGATCCTCACCTGTAGCACCCGCCAGGCAGGTGAGTGGACCCTGACTTGGCACAGGAAGGCCAAGAGGTCATTGCAGGCAGTGAGTCCCCGGTGGGCTGCAGGAAGCCTGAGCCGGGCCAGAAGATGAGTTTGGGTTCCTCC-CCGAAGGCTGCACAAAGTCAATCCCAGGGCTGGCCCAGGCCCTTGCCAGG-CCCACTGAATGCCCAGCACAGGGGCTGTCTTCTGCCTGGCTTTCCTATCTTCCCTTCCCCTGTCACCCTGTCAGGGAGCTCCTTGAACAGCTACTTTTCAGTATCTGCTTCCTCCAGAAGACAAGCCCTGCAAAGGCGCACCTGCCTTCCCGGCCCCATGTCCCCGTGCCTCGGACAGGGCTCAGGCAAATGAATGGGAGGTGGTCAGGGAACCTTACTGTGGCT a score=11251.0 s hg17.chr17_random 1829814 65 + 2618010 CATGGAGCTGCCTCACTTCCAGCCTCAGTCAGTGGCCTCTAGGCAGGACAGACACCTGGGCAGGT s panTro1.chr19 1205547 65 - 82489036 CATGGAGCTGCCTCACTTCCAGCCTCAGTCAGTGGCCTCTAGGCAGGACAGACACCTGGGCAGGT s rn3.chr10 658646 60 - 110733352 CACAGAGCTATC-CACATCTGGCCTCAGTGAGTGGTCTACAGGCTG----GATACCTGGTCAAGT a score=67799.0 s hg17.chr17_random 1829879 883 + 2618010 TCACAATCCCACCTCAGggccaggcagggtgacatgcggctgtaatcccagcatctagggtggctaagggggaggatcacatgagcccanagaggtcaagaccagcctgggcaacatagtgagaccccatctctacaaaaaaaattaaaaagtaaccgagtgtggtggtgcaagcctgtagtccaaggtactcaggaggctgaggcaggaggatcacttgagcccgggagttcagggctacggtgagccgtgatcacaccactgcagtccagcctggcaacacagagtgagaccttgtctctaaaaataataatcataaaagaaTCGCAGCTCATACATAAATGNGNNNNNNNNNNNNNNNTATNTNNNNNATTAAACGAATCTAGTTTCTANCNNNNNNNNGTCNNNNNNCTTGGGACCTTGTCAGCCTCAGTTCTAAGGGCGGC--------ATAGTGCTGGTTCTTCTTNNNNGTNNNNNNNCNTCNCNNNTTTNNCTAGttnttttttnttgttttttttttttgaggcagagtctcactctctcaccnaggctggagtgcagtggcgtgatctcagctcactctaacctccatctcctgggttaaagnaattctcgtgcctcaacatcccaagtagctgggattacaggcacgcgccaccaccatgcctggctga--ttttttttttttttttcatcccatgagttttctttctgtaatgatttttgtgtttttagcagacagggtttcaccatgttggccaggctggtctcgaacttccgacctcacgtgttttccctgctttggcctcccaaagtgctgggattacaggcttgagccaccgcacccagccTGGTTGAACTAGTTCTAAGGAGCAACTGCAGCCAGG s panTro1.chr19 1205612 892 - 82489036 TCACAATCCCACCTCAGggccaggcagggtgacacgcggctgtaatcgcagcatctagggtggctaagcaggaggatcacatgagccca-agaggtcaagaccagcctgggcaacatagtgagaccccatctctacaaaaaaaattaaaaagtaaccgagtgtgctggtgcaggcctgtagtccaaggtactcaggagtctgaggcaggaggatcacttgagcccgggagttcagggctacagtgagccgtgatcgcaccactgcagtccagcctggcaacacagagtgagaccttgtctctaaaaaTAATAATCATAAAAGAATCGCAGCTCATACATAAATGTGCGAGAGGGCTCACACTATTTATTTCATTAAACGAATCTAGTTTCTACATTGCTGCCGTCTGGCCACTTGGGACCTTGTCAGCCTCAGTTCTAAGGGCGGCATAGTGCTATAGTGCTGGTTCTTCTTCTCCGTCCCCACCCCTCTCCGGTTTAACTAGtttttttttttttttttttttttttgaggcagagtctcactctgtcacccaggctggagtgcagtggcgtgatctcagctcactctaacctccgtctcctgggttaaaggaattctcgtgcctcaacatcccaagtagctgggattacaggcacgctccaccaccatgcctggctgattttttttttttttttttcatcccatgagttttctttctgtaatgatttttgtgtttttagcagacagggtttcaccatgttggccaggctggtctcgaacttccgacctcacgtgttctccctgctttggcctcccaaagtgctgggattacaggagtgagccaccgcacccagccCGGTTGAACTAGTTCTAAGGAGCAACTGCAGCCGGG a score=1176.0 s hg17.chr17_random 1830762 10 + 2618010 TCTGGAGAGG s panTro1.chr19 1206504 10 - 82489036 TCTGGAGAGG s mm5.chr11 1310763 10 - 121648857 TCTGCTGCTG a score=100.0 s hg17.chr17_random 1830771 1 + 2618010 G s canFam1.chr18 35720533 1 - 66173745 G a score=140034.0 s hg17.chr17_random 1830772 334 + 2618010 GCTCGGCTGCCACCTTC-CCTCCCAGACAGCAGCTAGACAGCTGCTCCCAGGATCTGCTTTGAATT-AAAAGTGGCGTGGCCCTTTAAGAGAAGCATccgccggccgcccccgc-cgccgccgccccTCTTTGATGTCGCTGGCGCTGAAAGGTTCCNCAGTGGCAAGATCTGAGGGTTTGTTTCTGCCTCCCCAGA-GGCCACGT------------GGGGATCACAGGGAGGGAGGGAG--GGCGAGCGAAGGTCACAT-------GGCCTCCCTGGCCTGCTGCCGCTGTTGCGGCAGGAGCAGGAGCGTGGGGACCAGCAGGCTGGACGGGTGGGGGCCG--------CGGCCTGCAGCTCGT s panTro1.chr19 1206514 333 - 82489036 GCTCGGCTGCCACCTTC-CCTCCCAGACAGCAGCTAGACAGCTGCTCCCAGGATCTGCTTTGAATT-AAAAGTGGCGTGGCCCTTTAAGAGAAGCATCCGCCTgccgcccccgc-cgccgccgccccTCTTTGATGTCGCTGGCGCTGAAAGGTTCC-CAGTGGCAAGATCTGAGGGTTTGTTTCTGCCTCCCCAGA-GGCCACGT------------GGGGATCACAGGGAGGGAGGGAG--GGCGAGCGAAGGTCACAT-------GGCCTCCCTGGCCTGCTGCCGCTGTTGCGGCAGGAGCAGGAGCGTGGGGACCAGCAGGCTGGACGGGTGGGGGCCG--------CGGCCTGCAGCTCGT s mm5.chr11 1310773 317 - 121648857 GCCCATCTCCCTCCTCCTTCCTCCTGCCAGCAGCTAGACAGCTGTTCCAAAGATCTGCTTTGAATT--AAAGTGGTATGGCCCTTTAAGAGAAGCATCCACA---------------------------------GCCTCCAGCGCTGAAAGGTTCC-CAGTAGCAAAATCTGAGAGTTTGTTTCTGTCTCCCCAGA-GGCCACTTGCAAGCCTGCCGGAGGATCACAGGGTTGGGAAGAG--GGAGC-TGGAGGTCACATGACAGCCGGCCTCATTGGCCTGTAGAGTCTATTGCTTCAGGCACC------TGGGGGCCAGCA-ACTGGACAGCTGAGGGCTTGGTAC---CAGCCTGCAGCTCTT s rn3.chr10 659152 315 - 110733352 GGCCATCTCCCTCCTGCTTCCTCCTGCCAGCAGCTAGACAGCTGTTCCAAGGATCTGCTTTGAATT--AAAGTGGTATGGTCCTTTAAGAGAAGCATCCGCA---------------------------------GCCTCCAGCGCTGAAAGGTTCC-CAGTGGCAAGATCTGAGAGTTTGTTTCTGTCTCCCTGGAGGGCCACGTGCAAGCCTGC--TGG----AGGAGGTTGGAAAGAG--GGAGC-TGGAGGTCACATGGCAGCTGGCCTCATTGGCCTGTGGAGTGCTTTACTTCAGGCACC------TGGGGGCCAGCA-ATTGAACAGCTGAGGGGTTGGTACCCTCAGCCTGAAGCTCTT s canFam1.chr18 35720534 322 - 66173745 GCCTGTCCTCCGTGCTC-TGTCCCAGGCGGTAGCTGGACAGCTGTTCGCAGGATCTGCTTTGCATTAAAGAGTGGTGTGGTCCTTTAAGAGAAGCATCTGCC----GCCCCCGCGCACCACGGCCC--CTTTGATGTC----GCGCTGAGAGGTTCC-CAGCCGGGAGATCTGAGGGCTGCTTTCTGCCTCCCCAGG-GGCCACGT------------GCAGATCACAGGGTGGGAGGGCGGCGGGGC-CGAAGGTCACAT---GGCCGGTCTCCCTGGCCTGCAGCCACGACTGCCGC---CGCG------AGGGGACC-GCAGGCCGCGCGGACGGGGACCAGC------TGGCCCCAAGCTCAT a score=2637.0 s hg17.chr17_random 1831106 14 + 2618010 --GAGGGCGGTGGAGC s panTro1.chr19 1206847 14 - 82489036 --GAGGGCGGTGGAGC s canFam1.chr18 35720856 16 - 66173745 TAGGGTGTGGAGGAGC a score=632.0 s hg17.chr17_random 1831106 14 + 2618010 --GAGGGCGGTGGAGC s canFam1.chr18 35720856 16 - 66173745 TAGGGTGTGGAGGAGC a score=7539.0 s hg17.chr17_random 1831120 117 + 2618010 CTGGCAGCTGGGAGGGCAAAGGACCAGCC-TCTCTGCCCCTCCCCTTGGCACCCGGG--AGCCTGACCTC-----CAGCCTCCCTCACCTGTCCAGG---AAGGAGCCACACACT------GTCTGCGTGATGT s panTro1.chr19 1206861 117 - 82489036 CTGGCAGCTGGGAGGGCAAAGGACCAGCC-TCTCTGCCCCTCCCCTTGGCACCCGGG--AGCCTGACCTC-----CAGCCTCCCTCACCTGTCCAGG---AAGGAGCCACACACT------GTCTGCGTGATGT s rn3.chr10 659467 54 - 110733352 CGGACATCC-------------ACTAGCA-GCTTTG---------------------------------------------------TCTGTTCAGGATCAAGGAA---------------GTATGCTAGATAT s canFam1.chr18 35720872 130 - 66173745 -CAGCAGCTGGGAGGGCCAAGGAGGAGCCGTCTGGGGCTCTCCGCACCCGGCCTGGGACAGCCTGACCTCCCCGACGCCCTCCCTCACCCGGGCGGT---GAGGCTCCGCATGGTGGGGACACTCCCGTGACGC a score=23433.0 s hg17.chr17_random 1831237 145 + 2618010 CCCAAGAGGC------GGCATCTCCACTGATGAGCTGGGA-CTCC--CCCATCCCCATGCCCTTCCTCC-CCCAGCTTTGGAGGGTGGCCTTTCCCTGGTGGCCCTGCCNACTCCATGGTTAGCCCAG---------TAGGCTGCATGTTGGCA----------CCAGCCGGGT----------------- s panTro1.chr19 1206978 144 - 82489036 CCCAAGAGGC------GGCATCTCCACTGATGAGCTGGGA-CTCC--CCCATCCCCATGGCCTTCCTCC-CCCAGCTTTGGAGGGTGGCCTTTCCCTGGTGGCCCTGCC-ACTCCATGGTTAGCCCAG---------TAGGCTGCATGTTGGCA----------CCAGCCGGGT----------------- s mm5.chr11 1311164 109 - 121648857 CCCAAGAAG------------TTCCACAGATAAGCAGCAA-C----------------------CCCTC-TCCAGCTTGGGAACGCATC--TACCCTAGTGAGCCT-CC-AC-------TTAGCCCTT---------GTCACTGCAAGCCAGCA---------TCCAGCAGGGT----------------- s rn3.chr10 659530 140 - 110733352 CTCCAAAGGCACCCCGAGAAGTTCCACAGATAAGCAGCGA-CCCCTTTCCAGGCCTACACC---CTTCC-CCCAGCTTGGGAATATGTC--CACCCTAGTGAACCT-CC-AG-------TTAGCCCAT---------GCCACTGCAAGCCAGCA---------TCCAGCAGAGT----------------- s canFam1.chr18 35721002 169 - 66173745 CCCAAGGAGC------CCTGTCTCCACGGATTTTCAGGAAGCGCC--TCCCACCCCATGCCCTTCCTCCTTCCAGCTTTGGAATGTGGA----CCC---TGACCCT-CC-AG-----AGTCAGCCCAGGCAAGGCCAGCCGCTGCCAGCACGCAGGAGGGTCCTTCAGCCAGGACGATCCAGGGACCGGCT a score=1400.0 s hg17.chr17_random 1831382 8 + 2618010 GAAGCCGT s panTro1.chr19 1207122 8 - 82489036 GAAGCCGT s rn3.chr10 659670 4 - 110733352 ----CCTC s canFam1.chr18 35721171 8 - 66173745 GAGGCCCC a score=5374.0 s hg17.chr17_random 1831390 135 + 2618010 --AGGGAGGAGGCGGGATGGGGCGGAGCTCAGCTGCAGGGGTGCCAAGAGG--GGCANGATCCCGCC-AAATACCTG-----------------------GGTCCAA------------------------------------------------AAATGACAG------------------CCTCGGCCTCC---------------------------------CCGCTGGGCTCTAG-----GAGCTCTCA------------CCTGGGTGAAGGA- s panTro1.chr19 1207130 134 - 82489036 --AGGGAGGAGGCGGGATGGGGCGGAGCTCAGCTGCAGGGGTGCCAAGAGG--GGCA-GATCCTGCC-AAATACCTG-----------------------GGTCCAA------------------------------------------------AAATGACAG------------------CCTCGGCCTCC---------------------------------CCGCTGGGCTCTAG-----GAGCTCTCA------------CCTGGGTGAAGGA- s mm5.chr11 1311296 187 - 121648857 --GGGAAGGAAATGGGCTAGGGCAGGTCTTAGCTGCAGAGGTCCTGGTAGG--AACA-AGTCCTGTAGAAACATCAG--------------------TAAGGGCCAA------------------------------------------------AGCAGGTAAGTGCTCTAAGCTGCTAACTCTGGGTCACCCATACTGGTTCATCA----------TTGAGGGGCTGTAGGGCTTCAGTCTCAGGACTCTCA---------TGCTCCCAGTGAAGGA- s rn3.chr10 659692 188 - 110733352 --GGGAAGCAAATGGGCTAGGGCCGGCTTTAGTTGCAGAGGTCCTGGTAGG--AACA-GGTCCTGCAGAAACATCAG--------------------TAAGGTCCAAG----------------TCACCTCA----------------GTGCTCTAAGCGGCTG----------------ACTCTGGATCACC---------CCATACTGGTTCACCATTGAGGGGCTGTAGGGCCTCAG---------TCTCGGGACTCTCATGCTCCCAATGAAGGG- s canFam1.chr18 35721179 209 - 66173745 GCGGGGAGGGCACGAG---GGG------------GCAGGGGTGCCGAAAGGCCAGCA-GGTCCTGAC-AGGCGACCGGTGGGATCCAAGGGTTGAGCTTGGGACCAGAGACCCTGCACTGATCCTCTGCTCACTGGCATGGGGGGTAGGGAGGGAAGATCACAG------CAGGATGATGGGGTGCAGCCTCC---------------------------------TCCTGTGGCCCTGG-----GGGCTCTCC----------CTGCTAAATGAGAGGG a score=3660.0 s hg17.chr17_random 1831525 37 + 2618010 CATCCTAGG----GCAAGGCCGA-TCCTTTCCANCAGGNAAT s panTro1.chr19 1207264 37 - 82489036 CATCCTAGG----GCAAGGCCGA-TCCTTTCCACCAGGGAAT s rn3.chr10 659886 40 - 110733352 ACTCCTAGGATCAGCAACACAG--CCCTTTCTGCCAAGTGAC s canFam1.chr18 35721388 35 - 66173745 ---TACAGG----GTATGTATGGTCCCCCTGTGCCAGGTGAC a score=4664.0 s hg17.chr17_random 1831562 59 + 2618010 CCAGAGGCCACTCA-------CT-CCCAGGCACTGGGG---CCAGG-------GAGAGGGCAG-CCNCAACACCAAGC s panTro1.chr19 1207301 59 - 82489036 CCAGAGGCCACTCA-------CT-CCCAGGTACTGGGG---CCAGG-------GAGAGGGCAG-CGCCAACACCAAGC s mm5.chr11 1311696 68 - 121648857 CAAAAGGCCACCCG------TTT-TCCAGGAGCCAGAG---CTGAAAGTCTCTGAGAGCTCAGTTTCCAACAACTAGC s rn3.chr10 659936 71 - 110733352 CAAACGGTCACCTG-------TTTTCCAAGGGCCAGAAAGTCTGAAAGTCTCAGAGAGATCAGTGCCCAAGAACAAGC s canFam1.chr18 35721423 71 - 66173745 CCCAGGGCTGCTCAGGCTGGGCT-GTGAATGGCCA------CCTGATTCCCAGAAGAGGACACGTCCCCGCTTCAGAC a score=1912.0 s hg17.chr17_random 1831621 8 + 2618010 CCAGGAGC s panTro1.chr19 1207360 8 - 82489036 CCAGGAGC s mm5.chr11 1311764 8 - 121648857 TGAAAAAC s canFam1.chr18 35721494 8 - 66173745 CCAGAAGT a score=5956.0 s hg17.chr17_random 1831629 119 + 2618010 AGCCGCCCCGCCCAGGGGCCCNCCTCGCCCCTNCAANGACCTGGGCGAGAGCCACAGCAGCTCCTGACAAGGGACTTGGCTCATCNAGGTCNNANGNNNTNANNNNNNGNNNNNNCCTT- s panTro1.chr19 1207368 119 - 82489036 AGCCGCCCCGCCCAGGGGCCCCCCTCGCCCCTCCAAGGACCTGGGCGAGAGCCACAGCAGCTCCTGACAAGGGACTTGGCTCATCAAGGTCCCAGGATATGAGGCCAAGAAGGGTCCTT- s canFam1.chr18 35721502 84 - 66173745 ATCCA-------TAAGGGCCTCCC--------------------------GCCCCGACTGCACCAAGCAAGTGGTATTGCTGATCAAAGTCCCAGGAAACAAGGCCAAA---GGGCATTG a score=13436.0 s hg17.chr17_random 1831748 103 + 2618010 -CTGATGGATGGGGTGACCAGAAAAGGAGGTTNGGNGGGAAACCAAAANGGGG-CCATGCTCTGCGACGGCACCGCCTGGCCTCGGCA-CCTCCCCCACTCTGAGC------------------ s panTro1.chr19 1207487 101 - 82489036 -CTGATGGATGGGGTGACCAGAAAAGGAGGTT--GGGGGAAACCAAAAAGGGG-CCATGCTCTGCGACGGCACCGCCTGGCCTCGGCA-CCTCCCCCACTCTGAGC------------------ s mm5.chr11 1311818 79 - 121648857 -CTAATGAATACCG-GTACAGATATGAAAACT--TCGGGAAAACTAAAAGAG----------------------GCTTAGTTTCAGGG-TCTTCCTGGCTCTGAGC------------------ s rn3.chr10 660061 81 - 110733352 -CTAACAAATACAG-AGACAGATATGAAGGCTTTGGGGAGAAACTAAAAGAG----------------------GTTTAGTTTCAGGG-TCTTCCTGCCTTTGAGC------------------ s canFam1.chr18 35721586 113 - 66173745 CCGATTGGATGGGGTG---------GGGGGCT--TTGGGGAAACAAAAGGGGGTTCAAATTCTGTGATCGCAGGCTCTGGCTTGGGGTCCCTCCCCAACTCATAGCTAGAGATGGGCTCTTGAC a score=3846.0 s hg17.chr17_random 1831851 48 + 2618010 CGGTTGGAGAGCAGGGCCTCCCCCAAGAGCCAGCCAAGGGGGAAGC--------------GG s panTro1.chr19 1207588 49 - 82489036 CGGTTGGAGAGCAGGGCCTCCCCCAAGAGCCAGCCAAGGGGGAAGT-------------GGG s rn3.chr10 660142 48 - 110733352 -----------CCCAGCCCAGGCAAAGAACTA---AAGGTGGGATCTTAGGTATCTTCAGAG s canFam1.chr18 35721699 41 - 66173745 CGGCTGG-GAGCAGAACCTCCTCTCAGAGCTG------GGGGGAGC--------------GG a score=0.0 s hg17.chr17_random 1831899 35 + 2618010 CGGCCTCCCCCAACAGCCAGCCACATGGGGAAGCG a score=-420.0 s hg17.chr17_random 1831899 3 + 2618010 CGG s panTro1.chr19 1207637 3 - 82489036 CGG s rn3.chr10 660190 1 - 110733352 C-- a score=4963.0 s hg17.chr17_random 1831902 32 + 2618010 CCTCCCCCAACAGCCAGCCACATGGGGAAGCG s panTro1.chr19 1207640 28 - 82489036 CCTCCCCCAA----CAGCCACATGGGGAAGCG s mm5.chr11 1311939 31 - 121648857 CTTCCCTTCAGGGCAGGCTACA-GGACATGAG s rn3.chr10 660191 31 - 110733352 TTTCCCCTCAGAGCAGGCTACA-GGACCAGAG a score=58692.0 s hg17.chr17_random 1831934 214 + 2618010 GGTGGCCCGCCTCACTTCCCTGCTCACTTGGGCCTCAGAGGCCAGCAGCTGG----GGCGCAGGGCAGCCCAGGNGGCCAGGCGGGGCGGGGCGGCCGAGGCCNNNNCNNNNNANNNGGNNNNNNNNCGNNNNNNAGCAGCTGGAGCCCAG------------AGCGGCCCTGGCGCTCAA---------------------------------GGCCCTGGGGGGA---------GGGGCCCGGGATGTGCGGCAGGGAGCCGCCTCCAGT-- s panTro1.chr19 1207668 214 - 82489036 GGTGGCCCGCCTCACTTCCCTGCTCACTTGGGCCTCAGAGGCCAGCAGCTGG----GGCGCAGGGCAGCCCAGGTGGCCAGGCGGGGCGGGGCGGCTGAGGCCAGCACACAACAGCTGGGCCCCAGACGGCTGACAGCAGCTGGAGCCCAG------------AGCGGCCCTGGCGCTCAA---------------------------------GGCCCTGGGGGGA---------GGGGCCCGGGATGTGCAACAGGGAGCCGCCTCCAGT-- s mm5.chr11 1311970 205 - 121648857 GCTATCCTGCCCAGATTTCTTGCTCACTTGGACCTCAGAGGCCAGCAGCTGG----AGTGCAGAACAGCCCAGATGGCCATGTGAAGCCTGGTGGCTGAGACCAGCAT-------------------------ATAACAGCTGGGCCCCAGACAGCAGAAGGTAGCAG--CTGGAACATGG---------------------------------AGCCGGGGAAGAG-TGCAGGCTGGGGGCTGGGAATAGATACAGGGAG--GAGGCCAGT-- s rn3.chr10 660222 206 - 110733352 GCTATCCTGCCCAGATTTCTTGTTCATTTGGGCCTCAGAGGCCAGCGGCTGG----AGTGCAGAACCACCCAGATGGCCATGTGAGGCCCGGTGGCTGAGACCAGCAT-------------------------AGAACAGCTGGGCCCCAGACAGCAGAAGGTAGCAG--CTGGAACATGG---------------------------------AGCTGGGTAAAAAGTGCAGGCTGGGGGCTGGGAATAGATACAGGGAG--GAGGCCAGT-- s canFam1.chr18 35721740 233 - 66173745 GATCGTCTGCCCTGCTCCCCTGC-CTCTTGGGCCTCAGCGGCCAGCAGCGGGGTGCGGTGCGGAGCTGCCCAGGTGGCTGCACGTGGTGAGGTGGCCGGG--CGGCAG-------------------------GCAGCAGCTGGGGCCCAGACGGTGGC----CACAG--CTGGAACTCAGAAAAGCCCTCCCGTAGAGCCAAACCCGCGTCCAGGCCCTCACGGGGCCCCAGG--GGGAGCCAGCGTGTGGCGCAGG-----CCATCCCACAT a score=-2314.0 s hg17.chr17_random 1832148 1030 + 2618010 ATGGACAAGGAAGCCGGGTCTGGGGCTGCCTGACATGCTG----TGTGCTGGAC--GCTCATATCACCAAGT--TCCA------GGGCCCCACGCGAGGTCTC-GAGGGGACCCCTGTACCGCCAGCTGCCCTCCATCACAC-----CTTNNNNCCTNTNC------------------------GACTGCGCCTGCCCGCC--------------------AGCTTGGGCCCTTGC----TTCCTGAAATGTGCTGTCTTGACCCCNTTTTTCCCANGGGGGGGGGCTCCGGCCCCCCAGNCANCAGCCGTGACCCCGGCGGATTGACTC-AGAACCACCTGTGCAT----------CCCCAGCTCCCTCCCCAGGGGAAGGCGGTGAACAGAANCCCTCAC-CCCGTCCTGT-CTCGGGGNTGCCTCTCCTGAA-GCACAGAGTCCCCTCTG-----------GGCCTTCGTTTCCCCAGCTTTCCTGCCGCGGGGCACACA--GAGTCTAGGCTCAGTCAGAAGCCCCGGCGCCACCTG----AATGGGAGCCT-----------GGGGAACCCTGTATGGTCCTCCCTGAACAGGACAGTGGG------GATGGGGCAG------GGCCAGGGAAGCAGAGAAGGGCACA-------CCCTGTGAGGGACACCACACGCAACCATG------------------CAGCCTGGGATG--GGCACTGTGGTGCTCTCGTCGCCAGGC-------------------------CCCCATGTCT-----GCCCTCGCAGT-----CAACCT---------------------------TGGTCCCTGGGGGATCGCCTGCAATC-C----CACGACGCCTGGGCAGCATaactgtcatttatcacatggtcatcgccggagacgccgagcggagcccccaaaca--tcctg-cacctttgatgttcacgcggactctgtgaggcaggtgctgttctcat-cccgttttacagacgaggaac--------ctgagacgcaACTGCAGGCCCCGCAGCAGCCGGTACTTGGCTGTCNTAACCCAT----CCGCTNTG---------GTGCAGACAAAGTGG------------------ATATCTGTCTAACATGCAA----AAGGAGGGTTNTGAAACACCCTACCT--------------------------GCCAGGAAGGT--TTCTAGAGAGGAG-----------CCGGCCCACTCCACCCCAAGCTGGCCACTCNCGCTCACGGGGCCTCAGGCCTCATCCCCGCCACNTGGTGCCCTGTGCCCAGC s mm5.chr11 1312182 976 - 121648857 CCGGGCAAGGGAATTGGGTCCAGAGCTGTTGGATGTGCTA-GTCCCTGCTGGCCCAGCTC-TCTAACCAGGTCATTCATCTGTTGGTTCCCACAGAAGGTCTCAGATGGGACTCATGCAGCACCATCTG-CCTCTGCCACA-------------------------------------------------CGCTCCTCCTTC--------------------AACACAGACCTCAGC-TCTTTCCTGAAATGTTCCATCTTGG----GTCTTTCCCA---GGAAGGGCTCTGCCTGCCTAGGTAAGGGCTGTAACTCCTGGTACTTAACT----------CTATATTT----------ATCCATCCTTCTCCCCAG-----AACCCAGAACAAAACCCTGAACTCCTATCCTGT-TCTTGAGGTATTGTTCTGAAA-ACGCACAGTGCCC-----------------------TGATCCAGGCCCCCTTACTACTGGGCACACGCTAGATCTGAGCT-AGGCAGATGCTTC--CACCACCAGCTCTAATGGGAGGCA-----------GGCAAGAACAACAGG-------CAGAGCCAGGCAGTGCATATCCCGATAAGGCAGTGGAGCAGCCAAGAATG--GGGCAGGGCACAGCCCTTGCCTAGTAACTGATGTGTTGAGCATCTA------------------------CAAGGGT---AACTCTGAGGGGCCACCCTAGCAAGGTG-------GCTTGT----AACATTGTCCCAAGTCTAACTCACCCTCACAGTC--TACAACCTTCCTGTACATGGGACCTCAGACCACACTATTCCCTGAGGTACCACCAATACCCAC----CATAACGGCTG----------TTGTCTATCATCACATGTTCATT----GAGACTGCATCCTG---CCCCTGGCA--TCCTATCTCACTTGGTGTGCACA--------GCGAAGCAGGTAC---------------TTTATAGGAAAGGAAC-TGCAGCTCAGAGACCCATATGCTGGCAGTGGTAGAGCCAGGATT------------CCAAT-------------------------AGAGAAAGAAGCTCCCTACCTCTACCCCCACCTCTGTTTGATACCCAACTATGAGAAGAATTGATAAGAACACCAGC----------------------------------------------------------------CTGTGCTACTCCATCC--AACTGTTCACCTGGGTTCATG----CTTGGTCCAGGTACTC--------TTGTCCTGTACCAAG- s rn3.chr10 660435 1008 - 110733352 CCGGGCAAGGGAACTGGGTCTGGGGTTGCTGGACACGCTA-ATCCCTGCTGGGCCAGCCC-TCTAAGCAGGTCATTTATCTGTTGGATCCCACAGAATGTCTCAGATGGGACTCATGTGCTACTGTCGG-CCTCGGCCATG-------------------------------------------------CACGCCTCTTTCCCAGACCCAGAGATCAGCTTAACACAGACCTTAGC-TCTTTCCTGAAATGTTCCATCGTGG----CTCCTTCCCA---GGAAGGGCTCTGCCTGCCTACGTAAGGCCTGTACCTTCAGGTACTTAACTCTATGTTTATCTGTGCATTCTTTCCTCACTCTGTCCTTCTCCCCAG-----AACCCAGAACAAAACCCTGAACTCCTATACTGC-TCTTGACGTATTGTTCTGGAA-ATGCACAGTGCCC-----------------------CGCTCCAGGCCCCCTTGCTACTGGGCACACACTAGATCTGAGCT-AGAAGGATGCACC--CACTACCAGCTCTAACAGGAGCCA-----------GGCAAGAACAACAGG--CAGAGCCAGGCCGTGCA---CA--TCCCACTAAGTCAGTGGAGCAGCCAAGAGCG--GGAAAAGGCGCAGCCCTTGCCTAGTATCTGATGTGTTTAACATCCACAAGGGTAACTCTGAGGGACCACCTTAGGGAGGTGACTC----GTAACATTGTCGCATGTCTAACTC--ACC--------------CTCCCAGTCC---ACACGCTTCCTGTATGTAGGACCT-----------------CAAACCACCCTATTCCCTGAGGTACCACCAATACCCAC----CGTGACAGCTG----------TTGTC---CATGACATGTTCCTT----GAGCCAGCATCCTG---ACCCCAGCA--ACCTGTCTCAC----TGTGCACA--------GTGAAGCAGGTAA---------------TTTACGGGAAAGGAGC-TAGAGCTCAGAGACC---------------CATAGGTCAGCA--------------GCGGC-------------------------AGAGCCAGGAT-------------------------TCCAATACAGAA---------------AGACGCTCCCTACCCCTATCCCCAGCTCCATTTGATCCCCAACTATGAAGAGAATTATGAAGACCAG----------CCTGTGCTATCCCAGCC-AACCTATTCACCTGGCTTCAGG----CTTGGTCCAGCTATTC--------TTGTCCTGTGCCAAAC s canFam1.chr18 35721973 1080 - 66173745 CTGGGCCATAGCACTGAGCCCACCGCTTCTAGATGGCCTGAGTCCCCACAGGCCCGGCCC-TCTGGTCCCATTACTGGTGTGAGGGGCCCTACACGGGACTCCAGGTGGGACCCCCGCACCGCTGACGACCCTGCACCGTGCCCATGCCCTCCCCCTGTCCCCGATGCCTCCTCTGGCCAGTCTAGGCCCTGCGCCTGCCCC--------------------ACCTGGGGCCCTTGCTTTTTTTCTGAAATATTCCATCTCTG----TTATCCCCAG---GAAATGGGCACGTGTTCACAAGTGGGTCACATGTC------AACTGAGCT----------CTTTGGCTCCCTCCC---CCATATCTTTCTCCCCAA-----------GGGCCAGCCCTTGCACCCCCAAACCGTATCTGGGGATATTCCTCCTAAAGAAATGGAGCTCCCCCCGCTCCCCAGCCAGGTTCCCATTTCCCCAGCTTCCTTGCAGCTGGGCAGACGCCAGATCTAAGCTTAGCCAGAAGCACC--TGCTGCCCACCCGAAAGGGAGCCAGGAAGCCGAGGGGCGGGAATAATGCAAAGTCTACTGCATGTGGCAGTGGG------CAGAGGGCAG------AG--AAGGGCG-AGCCCCGCGCCCAGCACGTGTGGTGTCCCTGGTCAGGGGGCCACCGCCG----------------------CAAGG-----CGATTTGGGACATTGTTCCTGCTTCTTGTCCCCATACCTCCTCTAGACAAT-CCACGAGCCCTTCGTACCCAGGCCCT-----CGATCT-----------------------CCCCTGGTCCTGGAGAGATGGCCAGCAGCCACACCAAATAACAGCCA----------TCGTG---TAGCAtgtgctcact-----------------g---gcctctgcaggtcctgcctcatttcacgttccca-taaccctgggaggcaggtcctgttgtcgtccccactctttagattatgaacctaaagatcagagaCCCCACCACAGGCT---GGGGAATCAGGCCC------------CCTGTCCTGCCGCCATATCCCCCACCGTGTGGGTCCCCTAG------------------ACTTCCGTCTAACGAGCAA-----ATGGGGGT--GTGCACATCCCACG---------------------------GCCCAGAAT----TCCCAGAGCTTGGGTGGCACCCCCCTGTTCCAATTCAGGT-ACTCAGTTTACCTGGCGCACAG----CTT----CAGTCACCC-------GGTGTCCTACGTCCAGC a score=1175.0 s hg17.chr17_random 1833178 5 + 2618010 CTGAT s mm5.chr11 1313158 5 - 121648857 CTGAT s canFam1.chr18 35723053 5 - 66173745 CTGGT a score=348.0 s hg17.chr17_random 1833183 22 + 2618010 ---CGTTGTTGGTCTTACCCACTGA s canFam1.chr18 35723058 25 - 66173745 GACCAACGTGGGTCAGACGCAGTGG a score=655.0 s hg17.chr17_random 1833669 32 + 2618010 TCTAATCACATGACA--Gagtacattcagaaaat s canFam1.chr18 35723153 34 - 66173745 tagaattccatggcacttagtacgttcaccaggt a score=6032.0 s hg17.chr17_random 1833701 56 + 2618010 tgtgcaaccattaccacaatccattttagaacattttaatcaccccaaaaagaaac s rn3.chr10 661711 54 - 110733352 TGCGCAATCATCTCCACCAT--GGCTTCAGATATCTTCATTACCCCCTGAGGACAC s canFam1.chr18 35723187 55 - 66173745 tgcacaattaccactacagt-cattttggaacattctcatcaccccaaaaagaaac a score=520.0 s hg17.chr17_random 1833757 8 + 2618010 cccgtacc s canFam1.chr18 35723242 8 - 66173745 cttgtacc a score=100.0 s hg17.chr17_random 1834071 1 + 2618010 c s canFam1.chr18 35723250 1 - 66173745 c a score=60766.0 s hg17.chr17_random 1834072 700 + 2618010 actccctgtttctctccatctcctggaaaccaccagcggactttctatctctatgaagttgcctcttctggacactcgaaatgaatggactcataccgcatgtgcc-cttcagtgtccagttcatgtcacttggctga-tattctcaagattcacccacagtgcagcatatgtcagaacttcg-tttgttttacggctagaatatattccgttgtatg-gctgtgttccattg--tgtttacccactcatctgctgatggactttggggctgttttccgccttttggctactgtgactagt-cctgctgtgaacattcatgagccagtttttgtttgaacacttgtcttcaat-tctctgggtgtatccctgggagtgggcctgctgggtca------cgtgttttgtgtaac--a---tactgaggagccacc---aaaccgttttcca------tggtgagggacgtggccactgcactgtccatcccca-cagcgatgctctggggcttctgtgtcaccgcggctgcacccacgcttgttagtttctgtg-ttttgatcgtggtcatcttagtgggcatgaggtagcatctGACCCATTACTGATGGACC-TGGGTCCCCCTTTCTTATACCTGTCAGGGCCAGGTTGGTCCC-----ATCTTGATGCAGGTGGCCTGGAAGCAAAG--GCCCAGCACCTGCTGGCCCATAGGACCCG-CCACGGGAGCTGCTGCC s mm5.chr11 1313733 611 - 121648857 ATTCCCTGATCTTCCCGGTCTCCTGGCAGCCTATGGTGAGGCCTTTGTCCCTGTGGGTACACCCTTCCTGGGTATCTTGTGTCTATGGAACCACACAGCATGAGTC-CTTT-GTATCTGGGTTGTCTCACTCAGCCCAGTATTTTTAAGAC----------TGTAGCATAGGTCAGACTT----TTCTTTTTATAGCTGAAACACTTCCC------------------------------------------ACTGGTGGGCTTTTGAGCGGGCGTATACCTTCTAGCCATTGTGAATTGC-ACTGCCCCGAACACTTGCATGCCCGCTTTTGTTTGAACACCTGCTTCCAAT---TCAAGGTCAGTACCTAGGAGTGGAGGTGCTGGGTCAGATGGTGATGTTCTGCTGGACTTA---CACAGAAGAGCCACTCAACAACCATTTGGCA---------------------------------CCACCCTCAGCAGC----CCACAGAGTTCTAGTTCCATTTTGCCCTCGCCAACG-TTGTTATTTTGCACATTTTTGCTCATATCCACTCAAGTTGGCAAGGAGCAGTATCTGACCTA---------------GAGTCA----TTCATAAGGTGGTGAAAGTTACAATGGCCTC---TAATTTTGGTATCCATGAACTGAAAGTAAAAATACCTAGGGTCTTC---CTTAAAGAACCTGAATTCTGGAGAGACTTCC s rn3.chr10 661793 637 - 110733352 ATTCCCCGATCTTCCCGGTTTCCTGCCAGCCTATGGTGTGG-CTTTGTCTCTGTGGATTCACCCTTCCTGGGTATCTCTTGTCTACGGAACCACACAGCATGAGTC-CTTT-GTATCCGGTTTATCTCACACACACAG-TGTTTTTAAAAC----------TGTAACATAGGTGGGGATT----TTCTTTTTATAGCCGAAAGGCTTCCC----------------ACCATAG--AAAGAAACCAC------ACTGGTGGGCTTTTGAGC-GGTGTCCACCTTTTAGCCATTGTGGATTGCGGGTGCTCTGAACACTTTCGTGACAGCTTTTGTTTGAACACCTGCTTCCAAT---TCAAGGTGCGTACCTAGGAGTGGAGGTGCTGGGTCAGATGGCCATGTTCTGTTGGGC--T---CACGGAGGGGCCGCT---CAACGGTTTTCTG------------------CAGCAACTATA----CCACCCCCAGCAGT----GTACAGAGCCTCTGTTTCTTCTCGCCCTCGCCAGCGCTTGTTATATTGCATGTTTTTGCTCATATCTGCTCAAGTTGGCAAGAAGCAGTATCTGAATCAGTGCTGGC-------GAGTCT----TCCATTAGGTTGAAGGGGTTACAATGGCCTC---TGGTTTTGGTGTAGGTGAACTGAAAGCAGAAATACATAGC-----C---TTAAAAGAATCTGAAGTCTGGAGAGGCTTCC s canFam1.chr18 35723251 709 - 66173745 attccctattcctcccactgt-ctggcaaccagcagtcggc----tgtttctgtggatt-acccatggtggacaccccgcagaagtggaatcgtacactacggggcgcttt-gtctccggcttctttcactcggcgtgatgttcctaagct-cacccgtcttggggcgtgtgtcagtacttcgttccctcctacgtctgaatactattttattacgcgcagcatagaccacaatttgtttatccgttcatttgctgatggacatttgggt---tttccacctgctgacgaccatacacgac-attgccatgaacagtcacatacaagcgttcgtggggacccctgctttcaatgtttttaagaccacaccccggagtggaatcactggatca------tatgttcttctgtac--aaactaccgaggggccagc---agactggctccccgctcccccccgccccccgcagctgccccattttacattcccgccagc--agcacccaggttccaggttctccacaccctcaccgacacctgtcctttc---cattttcgaccacagtcatcttactggctgtgcggtgggacctgacccattgctgctcaactgtggatctccctTCCTCCCACCCGTCATGGCCACGGTGGCCGTCGCTGGGCTGCGTGCGGACAGCCTGGAAGCAGAG--GCCCAGGGCCGGGTGGCTGGACAGAGTGGCTGTCCTGGGAGGACCCA a score=-10031.0 s hg17.chr17_random 1834772 150 + 2618010 AGGCTCT--GGGTGCTCAAAACTCCGGGT--GG-GGAGTCCCAGGTGCAG---AGGATAAAGCTGTCCCAGGGGCTGGGGAAGTGT-------GAGGACAGAGCCAGTCGGTGTGAGTCAAGAGGAGGACATGGGTGTGAGCAGCTGCTGAGCCTCGGGAGCCCC s mm5.chr11 1314344 110 - 121648857 CAACACTTGGGATACTAAAAACTCT------------------GGTGCAG---TGGACACACTCACCGTCAGCCTTGGGG-------------GAACATAAAATCTGCCTATTTAAGATAGGAGAAGGACAGGGGTTTACACAG--------------------- s rn3.chr10 662430 113 - 110733352 CCACATTTAGGATACTGAAAACTCT------------------GGTGCAGACATGGACAGACGCATGGTTGGCCTTGGGG-------------GAACATAAACTCGGTCTATTTAAGGTAGGAGAAGAACAGGGGTTGAAACAG--------------------- s canFam1.chr18 35723960 117 - 66173745 GCAGATTCCAGGGGTTGAAAACTCTGAGT--GGAGGAGTATGAGGCGTGG---AAGGTAAAGCTGGCCTGGGGCGCGGGGGGGTGC-------AAGGACACACC---TCCATCTG---------------ATGAGTGTGAGCAG------------------CCC s fr1.chrUn 144947162 142 + 349519338 --AGGTCCTGGTCTCGTGGAGGTCTTGGTCCTGAGGAGGTCCTGGTCATG---AGGA-------GGTCCTGGTCTTGTGGAGGTCCTGGTCCTGAGGA-----------GGTCCTGGTCATGAGGAGGTCCTGGTCATGAGGAGGTCCTGGTCTTTTGGAGGTCC a score=61316.0 s hg17.chr17_random 1834922 365 + 2618010 GTCCCC-------GGCCGTAGGACTGCAGCCTTGTCAGTCATCCGGTCACGGCAAGGGGCTTCGNGAGGAGAGGGGAATGGGGGGAGGTGGAGGAAGGGCAGAGGTTCTGGGGAAGT--CTTGGGTTTGAGCCTCTTCTGGCGTCTGCTACCAG-TGTTGAATAAACCAAAATGTGAACTCATTTCGGTTCAACATGCAGGCTCCATCGCATTACAGGAGACGTCAGAAACTGTAACGCACATGGTCTTCTCCCGTCCTGGAATTTTCATCGGTGATCATGACTGCCAC------------CCCTACCGCGCAATttcacaagtgggctcttataatcccacaacag-ccctctgancagaggcactgttatcaccccngctttaaag s mm5.chr11 1314454 313 - 121648857 --------------------GGCCCGTAGC------------------------AGACACTT------ACAAGGAGAGAGGGAAGACTGGGAGGGAGGGCAGGGGTGCTAAGGGAAG--TTTTGGTTGAAGTCCCTTTT----TCTGCTACTAG-TGTTATATAAACC-AAACACAAACTCATTATGGTTTGATGTGCAGGCTAAATCACGCTACAGCAAAGGCCAGAGAATCGAATATGCATGTCCTTGGCTTGTTCTGGAA-TTTCTTTGGCAATCATAACCACCA-------------CCCTGCTGAGCACTTTCATGCTTGGGCTCCTGTAATCCCACAAGAA-CACTCCAA-CAGACGAACGGTCACTGCCTC-ACTTTAAAG s rn3.chr10 662543 296 - 110733352 --------------------GGCCCATAGC----------------------------------------------AGAGGGAAGAGTGAGAGCGAAGGCAGGGATGTTAAGGGAAAC-CTTTGGTCGGAGCCCCCTTT----TCTGCTACCGGTTGTTAAACAAACC-AAACACGAACTCATTGTGGTTTGATGTGCAGGCTAAATCACGATACAGCAAAGGCCAGAGAATAGAATATGCATGTCCTTGGCTTGTTCTGGAA-TTTCTTTGGCACTCATAACCACCA-------------CCCTGCTGAGCACTTTCATGCTTGGGCTCCTGTAATCCCACAA----CCCTCCAA-CAGACATACGGTCACTGCCTC-ACTTTAAAG s canFam1.chr18 35724077 339 - 66173745 ACCGCCACACCAGGGTCG--GGGCTGCTGC-------------------TCTAAAGGAGCAG------GACTGGGGAAGGCGGAGACACAGATGGACCG-GGAAGCTCTGGGGAAAGCATTTCGAT-----------------TTTGCTAGTTA-TGTTGAACAAACCAAAACAGGAACTCATTTCGGTCCAGTACGCAGGCTAAGACACACTAGGGCACACATCAGCGACTATAATATGCGTGCTCTTCCCGTGTCCTGGAA-TTTCGTTGCCAATCGTGACCGCCATCCCtgccgcgaaccatgctgagcactttcacgcatgggctcccgtaatcccacaaaagaaccactga-tagaggcacggtcattacccc-gctttaaag a score=1320.0 s hg17.chr17_random 1835287 7 + 2618010 gagagga s mm5.chr11 1314767 7 - 121648857 AATAGGA s canFam1.chr18 35724416 7 - 66173745 aagagga a score=66.0 s hg17.chr17_random 1835294 5 + 2618010 aNGCG s mm5.chr11 1314774 5 - 121648857 AACCG a score=-31.0 s hg17.chr17_random 1835605 1 + 2618010 G s rn3.chr10 662839 1 - 110733352 A a score=987.0 s hg17.chr17_random 1835606 11 + 2618010 AGAGGAAGCAC s rn3.chr10 662840 11 - 110733352 GTAGGAAACAG s canFam1.chr18 35724423 11 - 66173745 aacggaggcac a score=58615.0 s hg17.chr17_random 1835617 322 + 2618010 AGGCATAAGGAAAGGTCACAGGCCTTCCCTGGGATGTCCATACTGCACCAGGAGATGGCTCANAGCCAGGGCGGTGTG----AAGATCAACCCTGTGCAGC---------CAGCTGGAAGATGCCATCACGC--TCCGGACTTGGAATNACAGGTGCCCGGCGGGAGAGGCCTCCTCCGGACAGGTTCCTGCTGGACGCTGAAATCTGCCCTGGGTCAGCCTTCCCCGCCG-GGGTGTGGG---TGGGAGAACGCCTCAGGATGGGACCTGCGTCTGAAGCTACTGCCC----TNGGCCAGCCCCACACNTGGCTTTTAAACTGACCCGACGGCGGAGGGACAGC- s mm5.chr11 1314779 311 - 121648857 AGGCACAAAGAGAGGTCACAGACCTTGCCCAAAATCTCCC-----CACCAGGAAATGGCTCAGGGCCAGG--GATTGG----CAGCCTAGCCCTGTGTAGC-ATGCTACTCAGCTGGAAGTTAGCATTTCTCTGTCAAGAGTTGAGATAACAGGCTCCTAGGGTAGGAGTCTTC--CAGTGTAGGTTCTCGCTCAATGCT----TCTATTCTAG--TAGCCTTGGCTACTGAGGATAAAGGCTTTAAAAGAACATCTCAGAATGA----------TGGAGTTGCTGCCC----TTGGCCAGTCCCAAGCACACACTTTAAGCTGGTCCAACCACAGAGAGATAGC- s rn3.chr10 662851 311 - 110733352 AGGCACAAAGAGAGGTCACGGGCCTTGCCCAAAATCTCCC-----CACCAGGAAGTGGCTCCGGGCCAGG--GACTGG----CAGCCCAGCCCTGTGCAGC-ATGCCACCCAGCTGGAGGTTAGCATTTCTCTGCTGAGACTTGGAATAACAGGCTCCTAGGGTAGAAGTTTTC--CAGTGAAGGTTCTTGCTCCATGTT----TCTATCCTAG--TAGCCTTGGCTACTGACGATAAAGGCTTTAAAAGGACTTCTCAGAATGA----------TGGAGCTGCTGCCC----TTGGCCAGTCTCAAGCACAGACTTTAAGCTGGTCCAACAACAGAGAGATAGC- s canFam1.chr18 35724434 311 - 66173745 ------agacagaggtcacaggccttgccctgaatcgccc-----agccaggaaatgactcagagccaggTGAGTGTGAAGCAAGCACAACCCAACGTGGTCGCGCCATCCGGCTGGAGG-TAGCACTTCCCGCCTGGGACTTGGAATAGTAGGCTCCTAGAAGGAGAGGGCTCC-TTGGGCAGGTTCTCCC------------TGAAGCCAGGGTCAGCGGGGGCT-----GGGTGGGGAGGTTA----GATACCTCTGGACAGGACCTAAGTTTGAAGCTACTGCCTCTGGCTGGCCAGTCCTAAGCACGGCCTCTAAACAGA-CCAACGACAGGGGGACGGCC a score=2053.0 s hg17.chr17_random 1835939 11 + 2618010 AGG-GGGGATTT s mm5.chr11 1315090 12 - 121648857 AAATGTGGATTT s rn3.chr10 663413 11 - 110733352 AAG-GTGAACTT s canFam1.chr18 35724745 11 - 66173745 AGT-GTGGACTT a score=-224.0 s hg17.chr17_random 1835950 363 + 2618010 CTGAGTGAGCAGAGAGCTAAGGGTGAGCCTCAGCT-CTTCTGttagtgtccctgaacctcagttcccctcgtcaggaaaa-tgctgca-acctgccctgtggg-------gagagggacc--tgagtttgtg--acagcctgcctccctctga---gaatgtccccagGTTAGGCTGACCTCCAGGGCACCCCAGCCTGATCTTAGGCCTTGTGGTTTACACTGGGGTGCCTTACACCCATCGAATGCGCGGGGCAACAGCTCCCAG----CGTTTGGTCTCTCTGTTTCACAAGAGCCCAGGTAACTCGGCTGTCTGCGGGTGCAGGCGGCGCTGGGACTTTCTCCCTAAGCTCCTCACTCAGCCCGGGG-CTGGCAAGGAGGA s rn3.chr10 663424 267 - 110733352 ATGAATGAGCAGAG---------------TTTGCTGCGTCTCTCAGTTTCTCTGAA-CTCGGTTCCTATC--TGGAAACA-GAACACACATTTGCACC---------------AGGTACCCGTGAGCAGACT--CCTGCGTGCTTTTCCTT-----GAATGAACCC-GGCATCTTTGAACGTCAGG------CAGCCTCATCTTGGATTCTGTAGTTTAT---------CCTT---------------------------CTCC----------TTGGCTTC------TCACTGGATCTTAGGAGAGCTGGCCTGCCGCGTATGAAAGGTATATTGGGAA-----CCTGCAG----TCACTCAGCCTG---------AAGAAGAG s canFam1.chr18 35724756 337 - 66173745 TGGGATGAGGAGAG--------CTCATCGTCAGCT-CTTCTGttagcttctctgagtctcaattcccttcatctggaacatgggcacaCGGCTGCCCTGACGGTGCCTGTGGGGAGGACC--TGCGCTTGTGACACAGCCTGCCCCCTCCTTAGCTGAATGACCCCAGCCCAGGTCAACCTCCCGCGCACCTCAGACTCATCCTAGGCTTCAAGGGCTCTGCCACAGCATCTCTCACCCCTCAAGTGC-CCCAACACCGGCTTGTAAGGACCCTCTGGGGTC----------TGGAGCGCAGCCAGAGTGGCT-GCTGTGTGCG-------------------------CAGCTCCACGCCCAGCCTCAGGCCTCCCGAGAAGGA a score=0.0 s hg17.chr17_random 1836313 4 + 2618010 CGTC a score=100.0 s hg17.chr17_random 1836313 1 + 2618010 C s rn3.chr10 663691 1 - 110733352 C a score=291.0 s hg17.chr17_random 1836314 3 + 2618010 GTC s panTro1.chr19_random 56441775 3 + 57627672 GTC a score=17047.0 s hg17.chr17_random 1836317 254 + 2618010 --CACATGGCCCCGGCCGGCGGCTCG-GGGGCATCCTGGCTGCAGGCACCGCCCTGCGCCTCTG-----CTCTC-----CTGC--------CCCACGTGGTGCCGTAGGCTCCCCACTGTCCTGAATTAGG--AGGGGCTCTGGAAGCTCTGC-TTGTGTCTAGATCGTTGTCCTGAAATGTAAGACCTGGTTGTCCTGAAACGTAAGACCTGT-TTCCTATTTTTAAAATGGGTGTCATGGCGCCCAGCAGGCTTCAGACCGGAGGGTGAAGGAGAAA-------- s panTro1.chr19_random 56441778 255 + 57627672 --CACG-GGCCCCGGCCGGCGGCTCATGGGGCATCCTGGCTGCAGGCACCGCCCTGTGCCTCTG-----CTCTC-----CTGC--------CCCACGTGGTGCCGTACGCTCCCCACTGTGCTGAATTATG--AGGGGCTCTGGAAGCTCTGCGTTGCGTCTAGATCGTTGTCCTGAAACGTGAGACCTGGTTGTCCTGAAACGTAAGACCTGT-TTCCTATCTTTAAAATGGGTGTCATGACGCCCAGCAGGCTTCAGACCGGAGGGTGAAGGAGAAA-------- s rn3.chr10 663692 221 - 110733352 ----CGCAGGTTGGTTCTGCAGCACTGGTGGGATCCTTTCT---GACTCCACCCTAGGACTCCT-----CCCTAGGA-GTTGCAGCAGGTACCCACTAGATGAAACAGGCTCCTC-CTGCCATGAAT------GTGGGCTGTAGAAGCCCTGCCCGAGGTTTGGACCCTTGTCTGGAGGC--------------------------AGGTGTGT-TTCCTGTCTCTA----------CAAAAACACTACCAGACTGCAGG-CAGAAGGTAAAGAAAAAA-------- s canFam1.chr18 35725093 231 - 66173745 CAGAGGGCGCTGGGGCCAGCAGCAAT-CCGGGAGGCTGGGTGCGGAGCTGGGCCAGAGCCCCCAGCAGCCGCTGAGACCCTGC--------CCCACCAGGGGACACCGCCTCCCCACTGCCCTGATTTAGGAAAGGGGCTCAGTACCCCCCCC-------------CCCCCCC---------------------------------AGTTCTGGATCCCTGTCTTTAGCGCGGGTGTGATGCCG-CCGCTGGACCGCCGCGGGGAGGGGTAAGGAGAGTCCTGCGAA a score=10156.0 s hg17.chr17_random 1836571 103 + 2618010 GTCTGCCC--------------GGCCCCGCTGGCCCTGCGTATGTCCTTTCCTTTCTTTTGTCCATCCCACCCGCGCTCACCCCAGCAGGAAACCTCCTGAAC-CCCTCCTGTCCACC s panTro1.chr19_random 56442033 103 + 57627672 GTCTGCCC--------------GGCCTCGCTGGCCCTGCGTATGTCCTTTCCTTTCTTTTGTCCATCCCACCCCCGCTCACCCCAGCAGGAAACCTCCTGAGC-CCCTCCTGTCCACC s canFam1.chr18 35725324 107 - 66173745 AGCTGCTCCGTGACACTTTGTGGGTGTGGATGGAGAGGCGAATAAATGCTCTTTTTCTCTCCCCA-----------CCCACCCCGCCTAGCAGCCTCCTAAGCAAACACCTGCCCCCC a score=0.0 s hg17.chr17_random 1836674 3 + 2618010 CTG a score=291.0 s hg17.chr17_random 1836674 3 + 2618010 CTG s panTro1.chr19_random 56442136 3 + 57627672 CTG a score=34346.0 s hg17.chr17_random 1836677 263 + 2618010 CTCCAGTACTGATTTCCCACAGGAACCTTGTTCTAACCCCACTGCCCAGAGCCTCGGGA---GTGGACAGGGGTGCTCTCCAAGGTGAAGC-ATGGGGCAGGTGCCCTTCGTGGCATGAAGGGCCGCAAGCAGAGGCCTAGCGGGCAGCCACT----GGACCCTTGGCCTC--CTCCCCCAGTGGCGGCTGGGGC------AGGTTCTTGGGGGGTCCTCGGCATGGGGC-CAGC--------AGCCAGGCTGGGGCG-GGCGGAGATCCAGGACCTCACCTC-TGGCCC s panTro1.chr19_random 56442139 261 + 57627672 CTCCAGCACTGATTTCCCACGGGAACCTTGTTCTAACCCCACTGCCCAGAGCCTCGGGA---GTGGACAGGGGTGCTCTCCAAGGTGAAGC-ATGGGGTAGGTGCCCTTCGTGGCATGAAGGGCCGCAAGCAGAGGCCTAGCGGGCAGCCACT----GGACCCTTGGCCTC--CTCCCCCAGTGGCGGCTGGGGC------AGGTTCTT-GGGGGTCCTCGGCATGGGGC-CAGC--------AGCCAGGCTGGGGCG-GGCGG-GATCCAGGACCTCACCTC-TGGTCC s mm5.chr11 1316026 232 - 121648857 TCCCAGTTTTGATTTCTGTCAGGAATTTCATTCT--CGCTGGTCACCAGAGCCTGGGGATGTGTAGAGGAGGTAGTTACATTAGGTGAGATGACTTGGCAGATG-------------GAAGGG-----------GGTCTCCAAGACCGCAACTTCTCTGATCTTCTATCTCTTCTCCTCCAGTGGCGTCTGGGGCAGGGAGAGGTTCTT-AGTGATCTTCTTCATGGAGTGCAGC--------AGCAAG----------------------GGACTTTACACC-AAAGCC s rn3.chr10 664231 216 - 110733352 TCCCAGTTTTGATTTCTGACAGGAATTTAATTCT--CGCTGGTCACCTGAGCCTTGGGATGTATAGAGGAGGTGG-----------------TTACATTAGATG---------AGGTGACTTGCTCCAAGC--------------CGGCAACTTCTCTGATTC-AGCTCTCTTCCCCTCCAGTGGTGTCTGGGGCAGGGAGAGGGTCTT-AGTGGTCTTCTTCATGGGGCGCACC--------AGCAAG----------------------GGACTCTACACCAAAAGCC s canFam1.chr18 35725431 230 - 66173745 TCCCCGTTTTGATGTCTGA---GCATCTCATTCTGTCCTCAGT-------------------GAGGAGATGAGCG-----------------ATGGGACGGAGGAACTAGGTCGGGAGGAGGTCAACGAGG-GAGACCAAGCCCGCTGCTGCT-CCCGGATCC-GGGCCCCCGCCCTCCCTGCGACGGC-GGGGCAGGGAGAGATTCT--GGGGGTCCT-----TGGGGTGCCGCGCTGACGGGGTCAGGCCGGGGCGCTGC---------AAGCCCCACCCC-AGGCCC a score=69180.0 s hg17.chr17_random 1836940 237 + 2618010 CG-CGATCTCCTTAAGTCGTAGCTGCTTCTCTGACCCCAGCG----CCAGCAGGAGCGCCCC------GGAACTGAGCGACTCCCCCGCGNGCGCCTTGCTGGGG-----CGCGCNNNCCCTCCCGCAGGTCT-CCGAGGGAGCCAGGACCTCGCGCCCCACCTGTCCGCTTCTCCAGGAGG---CCCCGGCGCCACTGCTGCCGGGCCCTCGGCTGGAAGCCCTGTGTCCGCCGCCGCTTNGATCCCGGGGGNCCC s panTro1.chr19_random 56442400 236 + 57627672 CG-TGATCTCCTTAAGTCGTAGCTGCTTCTCTGACCCCAGCG----CCAGCAGGAGCGCCCC------GGAACTGGGCGACTCCCCCGCG-GCGCCTTGCTGGGG-----CGCGCGGGCCCTCCCGCAGGTCT-CCGAGGGAGCCAGGACCTCGCGCCCCACCTGTCCGCTTCTCCAGGAGG---CCCCGGCGCCGCTGCTGCCGGGCCCTCGGCTGGAAGCCCTGTGTCCGCCGCCGCTTTGATCCCGGGGGGCCC s mm5.chr11 1316258 243 - 121648857 TACCAACCTTGTTAAGTAGCAGTACGGTCTCTGACCTACATGTCTCCTAACAACTGCGGCAC------CAGATAGGGAGACTCTACAGCG-G------GTTGAAGTCACACGCTCGATCCTTCCTGCAGGTCGACCCCGAAAGCCCGG-CCTTGGGCCCCACCTGTCCGCTCCTCGCAGAGGCCCCCCCTGCACCGCTACTACCGGCCCCTCGGCGCGGAGCCCTGTGTCCGCCGCCGCTTTGATCCCGGGGGCCCC s rn3.chr10 664447 249 - 110733352 TACCAACTCTGTTAAGTAGCAGTACCGCCTCTGACCTACATGTCTCCTAACATCTGCGGGCTCCAGCACAGATAGGGAGCCTCTCCAGCG-G------GTTGAAGTCACACACTCGATCCTTCCTGCAGGTCGACCCCGAAAGCCGGG-CCTTGGGCCCCACCTGTCCGCTCCTCGCAGCGGCCCCCCCTGCGCCGTTACTACCGGCCCCTCGGCGCGGAGCCCTGTGTCCGCCGCCGCTTTGATCCCGGGGGCCCC a score=382.0 s hg17.chr17_random 1837177 4 + 2618010 TGCT s panTro1.chr19_random 56442636 4 + 57627672 TGCT a score=7708.0 s hg17.chr17_random 1837370 144 + 2618010 CCNCNCGGCNNGCTNNNGGCCTGGGCACTGGGGGATGAGAGGGACACTGGCNGCTNNNGGTGAGNGNNCCTNCNCNGNGCCCCCAGNCNGTCNGGNTNGNCCAGCTGNGNCGCGGGCGGAGTTCCCCGCCCCCCCACCCCGGCA s panTro1.chr19_random 56442829 143 + 57627672 CCCCACGGCCTGCTCTGGGCCTGGGCACTGGGGGATGGGAGGGACACTGGCGGCTCCAGGTGAGCGCGCCTGCCCAGCGCCCCCAGCCCGTCGGGCGCGGCCAGCTGCGCCGCGGGCGGAGTTCCCCGCCCACCC-CCCCGGCC a score=376.0 s hg17.chr17_random 1837514 3 + 2618010 GGC s panTro1.chr19_random 56442972 3 + 57627672 GGC s mm5.chr11 1316784 3 - 121648857 GAT a score=103156.0 s hg17.chr17_random 1837517 236 + 2618010 GCGGAAAAGCCTCGCCCCTCCCCGTCGCCGCCGCCCCTTCCAGCTgccccgcgggcgggggcggcggcgccgggctggccgcggtgaatggagccg-ccggggcc-gcccggccgcgctgcccccccacggagccgggccgggagcgcctccggcggccgcggcggggTAGTCCAGGCCCCTCCGTCAGGCTTGCGGTTTGGGAAGAAAANGGCGATGCCTCCGCCAAGAAAAGAGCG s panTro1.chr19_random 56442975 235 + 57627672 GCGGAAAAGCCTCGCCCGTCCCCGTCGCCGCCGCCTCTTCCAGCTgccccgggggcgggggcggcggcgccgggctggccgcggtgaatggagccg-ccggggcc-gcccggccgcgctgcccccccacggagccgggccgggagcgcctccggcggccgcggcggggTAGTCCAGGCCCCTCCGTCAGGCTTGCGGTTTGGGAAGAAAA-GGCGATGCCTCCGCCAAGAAAAGAGCG s mm5.chr11 1316787 224 - 121648857 GCGGAAAGGCCTCTTCC-TCCCCGCCCCCG-----------AGGCGCTCCGAGGGCGGGGGTAGCGGCGCCGAGCTGGCCGCGGAGAATGGAGTTGCCCGGGGCCAGCCCGGCCGCGCTG-CCCCCCACGGAGCCGGGCCGGGAGCGCCTCCGGCGGTTGCAACGGGTTAGTCCAGGCCCCTCCGTCAGACTTGTGGTTTGGGAAGAAAA-GGCTAAGCCTCCGCCAAGAAAAGAGTG s rn3.chr10 664980 224 - 110733352 GCGGAAAGGCCTCTTCC-TCCCGGCCCCCG-----------GGGCGCTCCGAGGGCGGGGGTAGCGGCGCCGAGCTGGCCGCGGAGAATGAAGCTGCCGGGGGCCAGCCCGGCCGCGCTG-CCCCCCACGGAGCCGGGCCGGGAGCGCCTCCGGCGGCCGCAACGGGTTAGTCCAGGCCCCTCCGTCAGGCTTGTGGTTTGGGAAGAAAA-GGCTAAGCCTCCGCCAAGAAAAGAGTG a score=52700.0 s hg17.chr17_random 1837753 271 + 2618010 Agcgcggccccctcccccc-tccgccgagcccgggcggcggcggcggNACATCTAAcgcgcgggcacccgggccgccgcggcccccgcAAA-TAAGCCCAGCCTCGGCCCCCGCCGCTCATTGGCGCGGGCCGCAGCCAGCGCACCCAGACCCTGCGCTGCCCTCGGACGGCCGGGCGCGGAGCCCCAGCTGCGGAGGCCGACGGCACCCGGCCCCGAGCGCCTCGACGCCGAG---CCGCGCGCGCCTTCTCCGCCAGGCCCGGCGGGCGGGAGC s mm5.chr11 1317011 266 - 121648857 AGCGCAGCCCCCTCCCCCT-GCCGC---GCCCGGGCGGCGGCGGC---ACTTCTAACGCGCGGGCACCCGGGCTGCCGCGGCCCCCGCAAACTACGCCCAGC-TCGGCTCCCGCCGCTCATTGGCGCGGGCCCGAGCCAGCGCACCCAGAGTCTGCATTGCCCTCGGCCGGCTACGCGCGGAGCCCGAGCTGCGGAGGCCGGTAGCGCCCGACTCC-AGAGCCTCGACGCCGAGAGCCCACAC-TGCCGCCCGGGGCAGGGACAACGCACGGGAGC s rn3.chr10 665204 267 - 110733352 AGCGCAGCCCCCTCCCCCCTGCCGC---GCCCGGGCGGCGGCGGC---ACTTCTAACGCGCGGGCACCCGGGTTGCCGCGGCCCCCGCAAAGTACGCCCAGC-TCGGCCCCCGCCTCTCATTGGCGCGGTCCGGAGCCAGCGCACCCAGAGTCTGCATTGCCCTCGGCCAGCTACGCGCGGAGCCGGAGCTGCGGAGGCCAGTGGCGCCGGACTCC-AGAGCCTCGACGCCGAGAGCCCACCA-GGCCGCCCCGGACAGGGAAAACGCACGGGAGC a score=6667.0 s hg17.chr17_random 1838024 46 + 2618010 GGGGGCGAGGGAGCAGGAGCGGC------CAGTGCCCCCGACACCCCCGGCC s mm5.chr11 1317277 40 - 121648857 CCGAGCCGAGGAGCAGCAGTGTC------TTGCGCGCCC------CCTGGCC s rn3.chr10 665471 40 - 110733352 CCGGGCCGAGGAGCAGCAGTGTC------TTGCGCGCCC------CCTGGCC s danRer1.chrNA 137899952 46 - 390413307 GAGATCAAAGGGACAAGAGTGTCACATGGCCACGCCTCC------TCCTGCT a score=15196.0 s hg17.chr17_random 1838070 100 + 2618010 CGGCACCCCCGGCCCGGCATCCCccgccgccgccgccgccgccTCAAGGCCGCCCGCTCCCCGCAGGTGGACGCGG---------------CCATGGGCCGAGGGGTGCGCGTGC s mm5.chr11 1317317 95 - 121648857 CGGCGCCCCG--------------------CGCTGCTGACGCCTCACGGCCGTCCGCTCTCCGCAGGTGGCCACAGGCCGGAGTGACATTGCCATGGGAGGAGAGGTGCGCGTGC s rn3.chr10 665511 95 - 110733352 NGGCGCCCCG--------------------AGCCGCCGACGCCTCACTGCCGTCTGCTCTCCGCAGGTGGCCACAGGCCGGAGTGACATTGCCATGGGCGGAGAGGTGCGCGTGC a score=13670.0 s hg17.chr17_random 1838170 44 + 2618010 TGCTGCTGCTGAGCCTGCTGCACTGCGCCGGGGGCAGCGAGGGC s mm5.chr11 1317412 44 - 121648857 TGCTACTGCTGGGCCTGCTGCATTGGGTTGGGGGCAGCGAGGGC s rn3.chr10 665606 44 - 110733352 TGCTACTGCTGGGCCTGCTGCACTGGGTTGGGGGCAGCGAGGGC s fr1.chrUn 91779001 40 + 349519338 TGCTGCTGCTGATGCTGATGC----CGTCCGGGGCTCTTTGCGC a score=118971.0 s hg17.chr17_random 1838214 263 + 2618010 AGGAAGACCTG--------GCGGC-GCCGGGGTCAGCAGCC------GCCTCCTCCCCCGCGGACNC--------------GAGGCGGCGCCGGCGGC----CGGACAGCCCGTGGAGAGCTTCCCGCTGGACTTCACGGCCGTGGAGGGTAACATGGACAGCTTCATGGCGCAAGTCAAGAGCCTGGCGCAGTCCCTGTACCCNTGCTCCGCGCAGCAGCTCAACGAGGACCTGCGCCTGCACNTCNTACTCAACACCTCGGTGACCTGCAACGACGGCAGCCCCGCCGGGTAAG s mm5.chr11 1317456 283 - 121648857 AGGAAGACCTG--------GAGGC-GCCGTGGCCAGCAGCCACCCCAGCCGCCGCCCCCGCCGCCGCTCCCGCAGCGGGCTGAGGTGGAGCCGGGCGC----CGGGCAGCCGGTGGAGAGCTTCCCGCTGGACTTCACGGCAGTGGAGGGCAACATGGACAGCTTTATGGCGCAAGTCAAGAGCCTGGCACAGTCCCTGTATCCCTGCTCTGCGCAGCAGCTCAATGAGGACCTGCGCCTTCACCTCCTGCTGAACACGTCGGTGACCTGCAATGACGGCAGCCCCGCCGGGTAAG s rn3.chr10 665650 283 - 110733352 AGGAAGACCTG--------GAGGC-GCCGTGGCCAGCAGCCACCCCAGCCGCCGCCCCCGCCGCCGCCCCCGCAGCGGGCTGAGGTGGCGCCGGGAGC----CGGGCAGCCGGTGGAGAGCTTCCCGCTGGACTTCACGGCAGTGGAGGGCAACATGGACAGCTTTATGGCGCAAGTCAAGAGCCTGGCACAGTCCCTGTATCCCTGCTCTGCGCAGCAGCTCAACGAGGACCTGCGCCTTCACCTCCTGCTGAACACGTCGGTGACCTGCAATGACGGCAGCCCCGCCGGGTAAG s fr1.chrUn 91779041 266 + 349519338 ACGAAGGTTCC--------GGGGCGGCCGCAACCCGCAACC------GCGGCGCGCACCACCTCCTCCCACGTATCGCGCCGA-------CCGG---------GGTGACACCACAGAGAGCTTCCCTCTGGATTTCACCGCCGTGGAGGAGAACATGGATAACTTTATGACGCAGGTGAAGAACCTGGCACAGTCGCTTTACCCGTGTTCGGCGCAGAAACTCGACTACGACATGAAGCTGAACTTTTTGGCGAACTCGTCCGTCACCTGCAACGACGGGAGCGCGGCTGGGTACG s danRer1.chrNA 137900139 279 - 390413307 ATGAGGAGCTGCTGTGTGAGATGA-GGCAGGTTCTGCTGCT------GCTGCTGGTGGTGTCGGTG--------GAGGGCCGCAGGGT--CCGGGACCAGCACACACACACGCCGGAGAGTTTTCCTCTGGACTTCACAGCGGTGGAGGGGAACGTGGAGGGCTTCATGGCGCAGGTGAAGAGCCTGGCGCAGTCGCTGTACCCCTGCTCCTCTCAGAGGCTGGAGCACCAGATGAAGCTGCAGATCCTCAAGAACTCCTCTGTCACCTGTAATGACGGAACACCTGCGGGGTGAG a score=23726.0 s hg17.chr17_random 1838477 297 + 2618010 GCCCGCGCCCTGCACCTCC----------------------------------CC--------------------------GCCCCGCC----CGACGCGCCCGG------------------------------------------------------TCTCCG------------------------GCTGGACCTTCCCTGCGGGCCGCGGCCGTTCTCTCCCCGGGGAGAAAGGGCTTCCGTCGGGCGCCCCGCGGTCCTGGCCCCGAGGAGNNNNCGGTTCGGTGACTCTCCGCGTGGGGAGCGGAGCGGCGCTGNANNNNCNNNNNCNNGNNNNNNNCGNNCACTGACCCCTCGGCCTCTGGGC-CCAGCCGCTCTGCTGGCGTCCTTCGGTCCCGGGGCGG----GGAGATGGCAGCCCGAGAGCGCGCCTGGCTCC s mm5.chr11 1317739 392 - 121648857 GCCAGCGCGGGGCAGGACC----------------------------------CCGGGAGGCCGTCAACCTGGCTTGGCTGGCCCCACCGGTGCTCCGCGCCTGGCTCGCCGTCATCCTATCGCTGGTGGCGCTCGCATCCTCT------------GCCTCCCCGCGCGCGTACAAACGCGGAGACTGTACTGGACCTGTCCTATTTTCAATGGCTGATCTGGTCCCTAGAGGAAAGGGTTCCACTCAGGCGTCTAGTGTTGCTAGCCCTGGAGAGAGCCTGGCTTGGAGCCTCCCAAAGCGGGGGAGGGGGCAGCTCTTGAAGCTCTGATCCTAGGCCAACTCGGGTGCTGACCTCTTGGCCACCGTGCACCCGC--CTTTGAAAG----TTCAGGTTCTGGGACAGAAAAAGAGACTGCAGTCGCAGAGTGGCCATATCTCC s rn3.chr10 665933 392 - 110733352 GCCGGTGCTGGGCAGGACCCCGGGAGGCCGTCAACCTGGCTTGGCTGGCTCCACCGGT-----------------------GCTCCG------CTCCTGGCTCGC-----CGTCGTCCCATCACTGGTGG------------CTCTCGCATCCTCTGCCTCCCCGCGCGCGCACAAACGCGGAGACTGCACTGGACCCTTCCTATTTTCAATGGCTGATCTGGTCCCTAGAAGAAAGGGTTCCACTCGGGCGTCTATTGCTGCTAGCCCTGGGGAAAGCCTGGCTTGGAGCCTCCCAAAGCGGGGGAGGGGGCAGCTCTTGAAGCTCTGGTCCGAGGCCAACTCGGGTGCTGACCTCTTGGCCACCGTGCACCCGC--CTTTGAAAG----TTCAGGTCCTCGGACAGGAAAAGAGACTGCAGTCCCAGAGTGGCTATGTCTCC a score=-18210.0 s hg17.chr17_random 1838774 236 + 2618010 AGCGGGAACNGGCGACAC---------------------------------------------------------------------------CGGGGGNC-GGGGAG----AGNCCCG---------------------------CTGCCCACCTCCTTGCAGC-------CCCGAAGTAGATAAA-----AGAC------GTGAGGTCGNGGGTCGGGGAGCGGCGGGGCCGCN----------------CACGCGCTC--------AACAGGCCGAGGACAGCCGG-GGACAGCGGGAGACTTGGGCG---------TGGGGTCGGGGCTCGGCAGG-AAGGCTCCCCCGCCGGGTCGGTGCCGCCCGCGCCTC----CCGCGCTCCCCGCGGCGTC-- s mm5.chr11 1318131 317 - 121648857 CGTAGAAAGAGGCAACACTTTACAGGAGGTTTCTGTCTCAGGGTTCCCCCCTGTGCATAGCAGATTGGCTCAGGACAGTCAGGAATTCGAGCATGGGAGCA-AGGAAG----GGGCACAAGAGGGACCAAGGGCTCCAGGGACAGCATTCACACATACCCCCAAC-------TTTGAAGTAGATAGA-----GGACACAG--GTGAAGCTGGAGGTCAGAAGGGTCTCTGGGTGCC----------------CACGCACTC--------AGTTGATCAATGTTAGTC---------------------------------------TGCGCCTTGATAGGAAAAGCTGTAACACTGCCTCGGTGGCTCCTGCATCTCCTTGCTGCGCTCCTTACTAC-TA-- s rn3.chr10 666325 295 - 110733352 AGTAGAAAGAGGCAACAT---------------------------------------------------------------------------TGAAGGAC-AGGAGGTTTCTGTCTCA---------------------------GGGCTCCCCTGTGCGTAACAGATTGGTTCGGGACAGTCAGGAATCCGAACACGGGAGCAAGGAGGGGGCACAAGAGGGACCGAAGGCTCCAGGTGCAGCATTCACACACGCACTCAACTTTGAAGTAGATAGAGGACACTGGGAGGTCAGAAGGGTCTCTGGATGCCCACGCGCTCAGTCTGGGCCTTGATAGA-AAGGCTGTAACACCGCTTCGGTGTCTCCTGCATCTCCTCGCTGCGCTCCTTACCAC-TA-- s canFam1.chr18 35727476 173 - 66173745 AGGGGGCGCAGGTGGGAC---------------------------------------------------------------------------CGGAGGACGGGGGAG----CGGC------------------------------GTCCACCCCTCTCCGC----------CCTGAAGTGTGCAGA-----GGAAGGAT--GCTCGTTTGACAGTCAGGGAGGGCCCCGACGGCC-----------------------------------------------------------GGAGGACC-----------------AGAGGTTGGGTC------GA---------------GCCTCGGTGACACCCGTGACC-----TCGCACGCCCCACTGG-CGGG a score=32961.0 s hg17.chr17_random 1839010 125 + 2618010 CCGTTCCCCCGCCAAGCGCGCTCCTTCAGTGCGGACGCGTTNCACGC--TTCAAgcgccgccgcgcgccccgggagg----------------------------accgccgcccgcgccgAGGTGACAGCGGGACCCGCGCCGGGCGGAACGTG s panTro1.chr19 1214721 125 - 82489036 CCGTTCCCCCGCCAAGCGCGCTCCTTCAGTGCGGACGCGTTTCACGC--TTCAAgcgccgccgcgcgccccgggagg----------------------------accgccgcccgcgccgAGGTGACAGCGGGACCCGCGCCGGGCGGAACGTG s mm5.chr11 1318448 127 - 121648857 CAGTTTTC----------TGGGTCTTTAGCCCTGGCAAATTTCTCCTTATTCAAGTGCCACTGCGTG-CTCGAGAGTTCA-----------------CTTCTTCCATAGTTATCAGCACCAGGGTTAACGCGGATCTCATGCGGGGCGGGCTGTG s rn3.chr10 666620 127 - 110733352 CCGTTTTC----------TGGGCCTCTAGCCCTAGCATATTTCTCATTATTCAAGTGCCACTGCGTG-CTCGAGAGTGCA-----------------GCTCTTCGACAGACATCGGCGCCAGGGTTAACGCGGGTCTCATGCGGGGCGGGCTGTG s canFam1.chr18 35727649 152 - 66173745 TCAGGCCCTCACCCCACACACACGTCTAGTGGGGGCCCTTTTCGGGC--TCCGAGCACCTTGGCGCGTTCCGGGAGATCCTGAGCCCAGCGAAGACTGCCCGGCTCCTGGCACCGGCGCCAGGGTTACAGCGG-TCCCGCGCGGGGCGGGCCGTG a score=38508.0 s hg17.chr17_random 1839135 112 + 2618010 GGGATTTTCCACGGACCACAGCCCCGCGCGGCCCGTTCCCCGCCCCGCGA---GCGC---CACCTCCCGGG-ACCGCCG---------CCGTC----------CNTGAGCTCCCCGTGGGCCTGGCCGAGGGCGCCCC s panTro1.chr19 1214846 112 - 82489036 GGGATTTTCCACGGACCACAGCCCCGCGCGGCACGTTCCCCGCCCCGCGA---GCGC---CACCTCCCGGG-ACCGCCG---------CCGTC----------CCTGAGCTCCGCGTGGGCCTGGCCGAGGGCGCCCC s mm5.chr11 1318575 117 - 121648857 GGAATTTTCCACGGACCACAGGACC-----CTCCATCCACCCACCCGCTG---TCGC---CACCTCTGGGGAATCGGTGGGGTTTCACCAGCT----------TGTGCGTTCCTTTTGCGATTGGCTGCGGGCGCCCC s rn3.chr10 666747 117 - 110733352 GGAATTTTCCACGGACCGCAGGACC-----CTTCATCCACCCACCCGCTG---TCGC---CACCTCTGGGGAATCAGTGGGGTTTCACCAGCT----------TGTGCGTTCAGTTTGCGATTGGCTGCGGGCGCCCT s canFam1.chr18 35727801 121 - 66173745 GGGATTTTCCACGGACCACACAGCCCCTCGCGGCCCTTCCCGCCCCGCCA---GCGC---CACCTCTCGGG-ACGGTCG---------CTGCCGGCGGCGCCGCGCACGGTCCACG-GGGCCTGGTCACTGGCGCCCT s galGal2.chr18 4848878 114 + 8919268 GGAATTCTC-----GCTGCACCCCTGCTCGGCCCAGGCGCTGCCGCACGACCTGCGCCTGCACCTCCTGCACAACGCCT---------CGGTC----------ACCTGCAACGACGGCAGCCCGGCCGGGTGAGTCCc a score=11655.0 s hg17.chr17_random 1839247 29 + 2618010 CGTGCGACCGTCGCGCGCGGCCGG-AACAG s panTro1.chr19 1214958 29 - 82489036 CGTGCGACCGTCGCGCGCGGCCGG-AACAG s mm5.chr11 1318692 30 - 121648857 CGCGCGGCTGTGGTGAGCTCCAGGCAACAG s rn3.chr10 666864 30 - 110733352 CGCGCGGCTGTGGTGAGCTCCAGGCAACAG s canFam1.chr18 35727922 28 - 66173745 CGTGCGGCC--CGCGCTGCCCGGGCAACAG a score=1528.0 s hg17.chr17_random 1839276 26 + 2618010 GTGGCGCGTTCCCTC----CGCCGGAG---------------------------CTg s panTro1.chr19 1214987 26 - 82489036 GTGGCGCGTTCCCTC----CGCCAGAG---------------------------CTg s mm5.chr11 1318722 56 - 121648857 GTGGAATGACCCTTTCA-GCACCGAAGTGGGAAAGAGGGCTTGAGGATTCCGGTTTG s rn3.chr10 666894 28 - 110733352 GTGGAATGACCCTTTCA-GCACCGAAG----------------------------TG s canFam1.chr18 35727950 30 - 66173745 GTGGAACGACCCTTTCCTTCCCCAGAG---------------------------CTG s galGal2.chr18 4849236 26 + 8919268 GTAGCGCCGACGCTC----CGGCGGGG---------------------------CGG a score=-7777.0 s hg17.chr17_random 1839302 23 + 2618010 ggcgcgcggggcg----------------------------------cggcgggTC-G s panTro1.chr19 1215013 23 - 82489036 ggcgcgcggggcg----------------------------------cggcgggTC-G s mm5.chr11 1318778 31 - 121648857 GGGATGAGGGTAGAAAA----------------AGA-----------AGGTGGCTCAG s rn3.chr10 666922 58 - 110733352 GGAAAGAGGGCTGAGGATTCCAGCTTGGGGATGAGGGTAGGGAAAGAAGGTGGCTCAA s canFam1.chr18 35727980 15 - 66173745 GGTCC------------------------------------------TGCTGACCT-C a score=4818.0 s hg17.chr17_random 1839325 31 + 2618010 GCAGCCCTGGCCGAC--CCCCCGCGGTGCGTCC s panTro1.chr19 1215036 31 - 82489036 GCAGCCCTGGCCGAC--CCCCCGCGGTGCGTCC s mm5.chr11 1318809 33 - 121648857 GTATCCCCACCTGACAGCATGCTCTGTGCGCCT s rn3.chr10 666980 33 - 110733352 GTATCCCCACCTGACAGCACGCTCTGTGCGCCT s canFam1.chr18 35727995 23 - 66173745 ACATTCCT-CCCGTC--CCC-------GCCCCC s galGal2.chr18 4849285 26 + 8919268 GCAGCTCCCGCTAAG-------GCCGCGCCGCC a score=100.0 s hg17.chr17_random 1839355 1 + 2618010 C s danRer1.chrNA 203795242 1 - 390413307 C a score=110711.0 s hg17.chr17_random 1839356 71 + 2618010 -TCC-----------CCCGCAGCTACTACCTGAAGGAGTCCAGGGGCAGCCGGCGGTGGCTCCTCTTCCTGGAAGGTGCGTCC s panTro1.chr19 1215067 70 - 82489036 -TCC-----------CC-GCAGCTACTACCTGAAGGAGTCCAGGGGCAGCCGGCGGTGGCTCCTCTTCCTGGAAGGTGCGTCC s mm5.chr11 1318842 70 - 121648857 -TCC-----------CT-GCAGCTACTATTTGAAGGAGTCCAAGGGCAGTCGGCGGTGGTTACTCTTTCTGGAAGGTGGGTTC s rn3.chr10 667013 70 - 110733352 -TTC-----------CC-GCAGCTACTATTTGAAGGAGTCCAAGGGCAGTCGGCGGTGGTTACTCTTTCTGGAAGGTAGGTTC s canFam1.chr18 35728018 70 - 66173745 -CCT-----------TT-GCAGCTACTACCTGAAGGAATCCAAGGGCAGTCGGCGGTGGCTTCTTTTTCTGGAAGGTGCGTCC s galGal2.chr18 4849311 81 + 8919268 -TCCTGTTTGTTTGTCC-GCAGCTACTACCTCAAAGAGTCGAAGGGCAGTCGGCGGTGGCTGCTGTTCCTGGAAGGTGAGCCT s fr1.chrUn 91780871 70 + 349519338 -CCC-----------TT-GTAGGTACTACCTGAAGGAATCCAGAGGCAGCAGGCGATGGCTGATATTCTTGGAGGGTCAGTAT s danRer1.chrNA 203795243 71 - 390413307 TTTA-----------TT-GTAGGTACTACCTGAAGGAGTCAAAAGGAAGCAAAAGATGGTTAATATTTCTTGAGGGTAAGTGT a score=5727.0 s hg17.chr17_random 1839427 6 + 2618010 AGGGCT s panTro1.chr19 1215137 6 - 82489036 AGGGCT s mm5.chr11 1318914 6 - 121648857 GGGGCT s rn3.chr10 667085 6 - 110733352 GGGGCT s canFam1.chr18 35728089 6 - 66173745 GGAGCC s fr1.chrUn 91780998 6 + 349519338 ACAGCT s danRer1.chrNA 203795314 6 - 390413307 GATGCT a score=3154.0 s hg17.chr17_random 1839433 37 + 2618010 GAGGCGG-GGGGAGGCCGGGG--GTCTGTGCGCGCGGGCC s panTro1.chr19 1215143 37 - 82489036 GAGGCGG-GGGGAGGCTCGGG--GTCTGTGCGCGCGGGCC s mm5.chr11 1318920 39 - 121648857 GAGGTGG-GGGGCAGGAGGGGTCTTCTGGACTTGTGGAAC s rn3.chr10 667091 39 - 110733352 GAGGTGT-GGGGCAGGAGGGGTCTCCTGGACTCCTGGGAC s canFam1.chr18 35728095 38 - 66173745 CAGGCGGCGTGGTGGGCAGAG--GCCCCTGCGCACAGACA s fr1.chrUn 91781004 28 + 349519338 TAAGAAG-GAGGGATGAGTGTGATTTTGT----------- a score=1007.0 s hg17.chr17_random 1839470 18 + 2618010 TGAGC---GGCGGTCGTGTCC s panTro1.chr19 1215180 18 - 82489036 TGAGC---GGTGGTCGTGTCC s mm5.chr11 1318959 20 - 121648857 GGAGCCT-GATGCCTGTGCCT s rn3.chr10 667130 20 - 110733352 GGAGCCA-GATGCCTGTGCCT s canFam1.chr18 35728133 20 - 66173745 CTGACAG-GGTGGCTGTGCCC s galGal2.chr18 4849492 16 + 8919268 TGACCCGCGGTGC-----CCC s fr1.chrUn 91781032 17 + 349519338 TGAGC-G-TGTGACTGTG--C a score=186678.0 s hg17.chr17_random 1839488 105 + 2618010 GCAGGCGGCTGGTACTGCNTCAACCGCGAGAACTGCGACTCCAGATACGACACCATGCGGCGCCTCATGAGCTCCCGGGACTGGCCGCGCACTCGCACAGGTCAG s panTro1.chr19 1215198 105 - 82489036 GCAGGCGGCTGGTACTGCTTCAACCGCGAGAACTGCGACTCCAGATACGACACCATGCGGCGCCTCATGAGCTCCCGAGACTGGCCGCGCACTCGCACAGGTCAG s mm5.chr11 1318979 105 - 121648857 GCAGGCGGCTGGTATTGCTTCAACCGGGAGAACTGTGATTCCAGATACAGCACCATGCGGCGCCTCATGAGCTCCAAAGACTGGCCACACACACGCACAGGTCAG s rn3.chr10 667150 105 - 110733352 GCAGGCGGCTGGTATTGCTTCAACCGGGAGAACTGTGACTCCAGATACAGCACCATGCGGCGCCTCATGAGCTCCAAAGACTGGCCACACACGCGCACAGGTCAG s canFam1.chr18 35728153 105 - 66173745 GCAGGTGGCTGGTACTGCTTCAACCGGGAGAACTGTGACTCCCGTTATGACACCATGAGGCGCCTCATGAGCTCCAGGGACTGGCCGCGCACCCGCACAGGTCAG s galGal2.chr18 4849508 105 + 8919268 GCAGGGGGCTGGTACTGCTTCAACAGGGAGAACTGCGACACGCGCTACGACACCATGCGGAGGCTGATGAGCTCCAAGGAGTGGCCCGCGACCAGAGTGGGTGAG s fr1.chrUn 91781049 105 + 349519338 GCAGGAGGCTGGTATTGCTTCAACAAGGAGAACTGTGACAGCCGCTACGAGACCATGAGGAGGCTGATGAGCTCTTCCAAGTGGCCCCAAACCAAAACAGGTCAG s danRer1.chrNA 203798366 105 - 390413307 GCAGGCGGCTGGTACTGCTTCAACAAAGAGAACTGCGACAGCAGATACGAGACTATGAGGAGACTCATGAGCTCCTCCAAATGGCCACAAACCAAGACAGGTCAG a score=-16955.0 s hg17.chr17_random 1839593 10 + 2618010 ---CGGCG--------GGC----------CC s panTro1.chr19 1215303 10 - 82489036 ---CGGCG--------GGC----------CC s mm5.chr11 1319084 21 - 121648857 ---CAGCACA-AGACTGGCT------CGGTC s rn3.chr10 667255 21 - 110733352 ---CAGCACG-AGACCGGCT------CGGTC s canFam1.chr18 35728258 28 - 66173745 ---CAGGTCACCGACTGCCCCCCCCACCTCC s galGal2.chr18 4849613 18 + 8919268 ---CGTCGCC-CGGCGGGCA---------CG s fr1.chrUn 91781154 10 + 349519338 CCTCGGCTCC--------------------- a score=-10289.0 s hg17.chr17_random 1839603 21 + 2618010 TGG----------GGAA-----GGCGTCTCGACGTG s panTro1.chr19 1215313 21 - 82489036 TGG----------GGAA-----GGCGTCTCGACGTG s mm5.chr11 1319105 26 - 121648857 TGC----------AGAATAGTCAGACTCTCCAAGTA s rn3.chr10 667276 36 - 110733352 CGGTAGAAGTAACAGAATAGTCAGACTCTCCAAGTA s canFam1.chr18 35728286 23 - 66173745 TGG----------GGGGTGGGCGGGG---CAGGGTG s galGal2.chr18 4849631 19 + 8919268 TGG----------GGGA---GCGGTGTTT----GTT s fr1.chrUn 106315299 21 + 349519338 ------------AAGAGTGGACATCATGTCATG--- a score=-11227.0 s hg17.chr17_random 1839624 115 + 2618010 A--GGCCCG--------------GGAGGAAGCCGCGCCC---GCCTCCTGGAGCCCCAGCC-AGGCCCCCACCCCGCACATCATGCCCAGCCTG-GCGCCCGGGTTTACTAAGA-GCAAG---GGGCGCCCTT-------CACTCTT------ s panTro1.chr19 1215334 116 - 82489036 A--GGCCCG--------------GGAGGAAGCCGCGCCC---GCGTCCTGGAGCCCCAGCC-AGGCCCCCACCCCGCACATCATGCCCAGCCCG-GCGCCCGGGTTTCCTAAGATGCAAG---GGGCGCCCTT-------CACTCTT------ s mm5.chr11 1319131 80 - 121648857 ATGGGTTCT--------------AGAAGGACCCATTTAC------CCCTGGAACCCCATCCTAGACCCCGAGCCC---------------------------------CTAAGC-CCATG---GAGAGCTCCT-------C---CTC------ s rn3.chr10 667312 84 - 110733352 A--GGTCTTC-----------TAGGAAGGACCTGTTTAC------CCCTGGAGCCCCATCCTACATCCCGA---------------------------------GTCCCTAAAA-CCATG---GAGAGCTCCT-------CACTTTT------ s canFam1.chr18 35728309 111 - 66173745 G--GGCTCACAGTTCCAAGTTCCCAAAGAACTCCTGCCCTTTGCTTTCTAGAGCCCTGGGG-AGCCCCCCACCCAGTTCTCTCCCCC-------------------TCCTAAGG-TCAGC---GGACACC----------CACTTAT------ s galGal2.chr18 4849650 127 + 8919268 A--GGCTGT-----------------GGGCAGCGCGGCC------TCACGGAACTCCGACTCGCGTCCCCTCCTTATTGTAAATGCGCTCCAGACCCGCCGGGATCTTCTAAAG-CTTGGTTTGGGCGCTTGTTTTGAAGCGCGTCTGTGCTT a score=-11711.0 s hg17.chr17_random 1839739 90 + 2618010 GCCTTTTGGG--GCCCATTCCACATTAGCATTCAGGCGCTTACC-CAGCGG---------------CTCTGGCC------CTCCCCAGGGTCAAAGCAG--GGCAAGGGGTTGAAG s panTro1.chr19 1215450 90 - 82489036 GCCTTTTGGG--GCCCATTCCACATTACCATTCAGGCGCTTACC-CAGCGG---------------CTCTGGCC------CTCCCCAGGGTCAAAGCAG--GGCAAGGGGTTGAAG s mm5.chr11 1319211 15 - 121648857 ACCTTT-----------------------------------------------------------------------------------------------------GGTTTAATG s canFam1.chr18 35728420 99 - 66173745 CATTCTTCAT--TCTTATTCCGCAGGTAACCTCAGAGGCTTACCATGGCTG---------------CTCTGCGCACCAGTCCTCCTTGGGCCAAGGCAGCCAGTGCAGGGTGGAAG s galGal2.chr18 4849777 97 + 8919268 --CTCTCAGTACACCCCTTCCCCACTCGGATCGCGGTGCTGTATGCATCGGTGCACATAGAAGTACCTTTGG--------CTTTTTAATGTCA--------CACGTAAGCTGAAT- a score=-2384.0 s hg17.chr17_random 1839829 20 + 2618010 TCAAGGTC-AGACCTG-GTGTC--- s panTro1.chr19 1215540 20 - 82489036 TCAAGGTC-AGACCTG-GTGTC--- s mm5.chr11 1319226 12 - 121648857 ACTAAGTC----------TAGC--- s galGal2.chr18 4849874 24 + 8919268 -CGATACCCAGAGCTGCGGGGCTCC a score=171.0 s hg17.chr17_random 1839829 37 + 2618010 TCAAGGTCAGACCT----GGTGTCCAGCCTAGCCGGGCACC s galGal2.chr18 4849874 41 + 8919268 CGATACCCAGAGCTGCGGGGCTCCGGGGCTGGCAGAGCACT a score=211.0 s hg17.chr17_random 1839849 17 + 2618010 CAGCCTAGCCGGGCACC s panTro1.chr19 1215560 17 - 82489036 CAGCCTAGGCGGGCACC s mm5.chr11 1319238 12 - 121648857 CAGCCTC-----TCATC s rn3.chr10 667396 7 - 110733352 CAGCCCG---------- s galGal2.chr18 4849898 17 + 8919268 GGGGCTGGCAGAGCACT a score=-50922.0 s hg17.chr17_random 1839866 185 + 2618010 GTGGCCATGGTGGCTTCCCGGGGGTAACTAAACCCAA---CTGTCC--TCCACT-TTCCCGGCAACCTTGGTTCGGGCTAG------CAACACCA-------GCACACCTCCCTTCC-TGGGG---CC--------AAGTAGG--AGCCCC--------AACACCTCACCAGGGTTNCCCAGA--CCCGACC-CTACACAGCCTCCTC-------------------------CCGCTAGAAAGACCCACCGCC s panTro1.chr19 1215577 184 - 82489036 GTGGCCATGGTGGCTTCCCGGGGGTAACTAAACCCAA---CTGTCC--TCCACT-TTCCCGGCAACCTTGGTTCGGGCTAG------CAACACCA-------GCACACCTCCTTTCC-TGGGG---CC--------AAGTAGG--AGCCCC--------AACTCCTCACCAGGGTT-CCCAGA--CCCGACC-CTACACAGCCTCCTC-------------------------CCACTAGAAAGACCCACCGCC s mm5.chr11 1319250 75 - 121648857 -------------CTTCCC-----TATCTA------------------TCCAC----CCTTGCACCTCAGGCCAGGGCCA----------------------------------------------TC--------AAGAATA--AGTC----------------------------CCCATA--CCTG-------CATATCCCCTTC---------------------------------------------- s rn3.chr10 667403 103 - 110733352 ---------CTGACTTTTC---AATAACTGAGCCTA------------TCCACC-CTCCCATCATTCCCTATCCACCCTTG------CA---------------------------C-TAGGGCTATC--------AAGAAGGA-AGTC----------------------------TCCGTA--CCTG-------CACACCCCTTTC---------------------------------------------- s canFam1.chr18 35728519 134 - 66173745 AGGGCAAGGGTCACGTCCG---AGTGATTG----------------------------------------GCCTGGCCTG---------------------------CCTGCCTTGT-TGTGG---CC--------AAATAAGATGGCCCA--------CATCCCACACTGT-----CCTGGAGCCCCGGTCGCTGCACAGCCCTTCC-------------------------CCCCAGAAAAACCCCTGCCTC s galGal2.chr18 4849915 235 + 8919268 ---GCCAGCCTCCCTTCCT---TCTGGTTGCACTCAGTCCCTCCCCATCCTACTGCTCCCATTTGCAGGTGCTCACCTGAGGGCATTCGGTGTCAGGGAAGTGCTCATCTCTGTGCCGTGGGG---CCTTTCTGTGCTGCAGG--AGCTGTATGGATGGAGCTCTGTAGGCAGGC--TCCAGC--CCTAACG----CAAACCACGCTCTGAAGCTCACGTAGAAATCAGAGTGTCACTGAATGTTCCCTCTTTG a score=2631.0 s hg17.chr17_random 1840051 10 + 2618010 TCTGTGTCCC s panTro1.chr19 1215761 10 - 82489036 TCTGTGTCCC s mm5.chr11 1319325 9 - 121648857 -TTGTTTCAC s rn3.chr10 667506 9 - 110733352 -CTGTTTCCC s canFam1.chr18 35728653 10 - 66173745 TGTCCTTCCC s galGal2.chr18 4850150 10 + 8919268 CGTCCATCTG s fr1.chrUn 106315378 10 + 349519338 TCTGCACTTA a score=135103.0 s hg17.chr17_random 1840061 69 + 2618010 CAGGCACAGGGATCCTGTCCTCACAGCCGGAGGAGAACCCCTACTGGTGGAACGCAAACATGGTGTAAG s panTro1.chr19 1215771 69 - 82489036 CAGGCACAGGGATCCTGTCCTCACAGCCGGAGGAGAACCCCTACTGGTGGAACGCAAACATGGTGTAAG s mm5.chr11 1319334 69 - 121648857 CAGGTACTGGTATTCTATCCTCCCAGCCAGAGGAGAACCCCCACTGGTGGAATGCCAATATGGTGTAAG s rn3.chr10 667515 69 - 110733352 CAGGTACTGGTATTCTATCCTCCCAGCCAGAGGAGAACCCACACTGGTGGAATGCCAATATGGTGTAAG s canFam1.chr18 35728663 69 - 66173745 CAGGCACCGGGATCCTGTCCTCCCAGCCAGAGGAAAACCCCCACTGGTGGAATGCCAACATGGTGTAAG s galGal2.chr18 4850160 69 + 8919268 CAGGAACGGGGATCCTGTCGTCACAGCCGGAGGAGAACCCCCACTGGTGGAACGCCAACATGGTGTAAG s fr1.chrUn 106315388 69 + 349519338 CAGGTACTGGAATACTGTCTTCTCGCGCCGAGGAAAACCCACACTGGCACAATGCCAACATTGTGTAAG s danRer1.chrNA 203798628 69 - 390413307 CAGGCACAGGAATGCTGTCTTCACTCCCAGAGGAAAACCCACACTGGTGGAACGCCAACATGGTGTGAG a score=-9130.0 s hg17.chr17_random 1840130 67 + 2618010 GGGGCACAGGGTCTTGCC---TGGGAGTCCTGCCTGGAG-GGTGGTTCT--TCCCGGGGGG-TCCT--TC---CTTGGG s panTro1.chr19 1215840 68 - 82489036 GGGGCACAGGGTCTTGCC---TGGGAGTCCTGCCTGGAG-GGTGGTTCT--TCCCGGGGGGGTCCT--TC---CTTGGG s mm5.chr11 1319403 48 - 121648857 AGAGCATGGGTTCCC-----------------CTTGGTG-GGGGTTCCT--TCCTGGGAGGGTCCT--TC--------- s rn3.chr10 667584 70 - 110733352 AGAACATGGGTTTCCCTT-GGTGGGGTTCCTTCCTGGA---GTGGTCCT--CCCTATGGAG-TACT--TTGAGTGTGGG s canFam1.chr18 35728732 41 - 66173745 AGGGAGCAGC-------------------------------GGGGTGCC--TCCTGAGGGGGTCCT--TC---CCTGGG s galGal2.chr18 4850229 47 + 8919268 AGAGA------------------------CTGCTCGGGGAGATGGCTTC--TGCTGTTACC-TCCT--GC---TTTGGG s fr1.chrUn 144947382 71 + 349519338 -----GGAGGTCCTGGTCTTGTGGAGGTCCTGGTGTCTGAGGAGGTCCTGGTCATAAGGAGGTCCTGGTC---ATGAGG a score=4774.0 s hg17.chr17_random 1840197 51 + 2618010 AAGTCATATTC-TGAAATGGTCTT--TCCTGGGGG----TCCTGTTCTGGATG--GTTCT--- s panTro1.chr19 1215908 51 - 82489036 AAGTCATATTC-TGAAATGGTTTT--TCCTGGGGG----TCCTGTTCTGGATG--GTTCT--- s mm5.chr11 1319451 34 - 121648857 ----------C-TGGAGTGGTCCT--TCCTATGGA------ATACTTTGAGTG---------- s rn3.chr10 667654 53 - 110733352 GATTCATTCTT-GGGGGCCGGCCT--TTGTGGGGGGG--TCATATTTGGGGTG--GCCTT--- s canFam1.chr18 35728773 53 - 66173745 GAGTC--TGTG-GGGGGTGGTCCT--CCTTGGGGAGGGTTCCTGTTCCTGAGG--GTCTT--- s fr1.chrUn 144947453 61 + 349519338 AGGTCCTGGTCATGAGGAGGTCCTTGTCTTGAGGAGG--TCCTGGTCCAGAGGAGGTCCTGGT a score=-955.0 s hg17.chr17_random 1840248 178 + 2618010 T-TTGGGGAGGT--CCTGNTCCTAGAGGGGTTCTGG--------AGGTGTTTCTTTCGTGGTGGGGAGG-------AGGTCCT-GTCCTGGGATGGTCCT--TCCTGGTGG------------GGAGGGGTCT--ATCCT----GAGATGGTCC----TTCCTGGCAGGGTCC----TCTCCTGGG---ATGGTCCT----TCCAGGGGGATCCTGTCCTGGGATGGTCCTT s panTro1.chr19 1215959 140 - 82489036 T-TTGGGGAGGT--CCTG-TCCTAGAGGGGTTCTGG--------AGGTGTTTCTTTCGTGGTGGGGAGG-----------------------------------------------------------GGTCT--ATCCT----GAGATGGTCC----TTCCTGGCAGGGTCC----TCTCCTGGG---ATGGTCCT----TCCAGGGGGATCCTGTCCTGGGATGGTCCTT s mm5.chr11 1319485 157 - 121648857 ---TGGGGA-----CTCA-TTCTTGGGGG---CTGG---------------CCTTTGTGGGTGGTCATA-----------------TTTGGGATTGTCTT--TAATAGAGG------------GCTTAGGTCT---TCCTAGGGGCGATGAACC----TTCTCGG-AGGGTCTAGGAGTCCTTGGGAGAATGGTTCT----TTTAGGGGGTCCTTTTCCTGGGGGGA----- s rn3.chr10 667707 153 - 110733352 TAATAGAGAGTTTAATTC-TTCTTGGGGG---------------TGATGATCCTTCTCAGAGGGTCCTT-----------------CTTGGGGAGATCCT--TCCTAAAG------------------GCCCT--GTTTTAG--GAGGTATCCT----TTCT----AGCATTC----CTTCCTGGGAGAATGATTCT----TCTAGGGGCTCCCTTTCCTTGGGGG------ s fr1.chrUn 144947514 217 + 349519338 -CTTGAGGAGGT--CCTGGTCATGAGGAGGTCCTGGTCTTGAGGAGGTCCTTGTCTTGAGGAGGTCTGGTCCTGAGGAGTCCTGGTCTTGAGGAGCTCCTGGTCATGAGGACGTCCTGGTTTTGTGGAGGTCCTGGTCTT----GAGGAGGTCCTGGTTTTGTGG-AGGTCCT----GGTCTTGTG---GAGGTCCTGGTCTTGAGGAGGTCCTGGTCTTGTGAAGATCCTG a score=15616.0 s hg17.chr17_random 1840426 192 + 2618010 CTTTCCTGGGGGGTCCTGTCCTGAGTTGGTCTTT--CCTGGAAAGGGTCCTGTCCTGGGTTGGTTCT--TCCTGAGGAGTATTACGCT----GGAGGTCTT--TCTTGAGGG---------------GAAGTTCT-ATCCTGGGATGGTCCTTCC----AGGGGAATCCTGTCCTGGGATGGTCTT--TTCTGAG--GGTCCTGTTC---TGGGGGTCCT-TTCTGGAGG s panTro1.chr19 1216099 192 - 82489036 CTTTCCTGGGGGGTCCTGTCCTGAGTTGGTCTTT--CCTGGGAAGGGTTCTGTCCTGGGTTGGTCCT--TCCTGAGGGGTATTATGCT----GGAGGTCTT--TCTTGAGGG---------------GAGGTTCT-ATCCTGGGATGGTCCTTGC----AGGGGAATCCTGTCCTGGGATGGTCTT--TTCTGAG--GGTCCTGTCC---TGGGGGTCCT-TTCTGGAGG s mm5.chr11 1319642 100 - 121648857 -------GGGGGGTTCTATTCTAAGGAGGACCTT--CCTGG---------------------------------------------------GGAGGTCCT--TCTTGAGGG------------------------------------------------------TCTTATCCTGGACAGCATTT--TTCTCAG--GGTCTTTCAT---GGTAGATTTG-GTC------ s rn3.chr10 667860 93 - 110733352 -------GGGGAATTCAATTCTAAGGAGGTCCTT--CCTGG---------------------------------------------------GGAGGTCCT--TCTTGAGGG------------------------------------------------------TCTTATTCTGGGCAGCATTT--TTCT------------------TGGGGGTCTT-TCATGGTAG s canFam1.chr3 63989449 183 + 95079643 CTGTCCTGGGGGAGCCTGTCCTGGGGATGCTCTC--CTTTG---GGATCCTATCCTGGG-GAACTCA--TCGTGGGGAGTCTGTCCTG----GGGATGTTC--TCTTACGGG------------------ATCCT-ATCCTGGGGAACTCATCGT----GGGGA--GCCTGTCCTGGGGTAGCCTG--TCCTGGG--GACGCTGTTC---TTGGGATCCT-GTCCTGAGG s fr1.chrUn 144947731 230 + 349519338 GTCTCGTGGAGGTCCTGGTCTTGAGGAGGTCCTGGACTTGAGGAGGTCCTGGTCCTGAGGAGGTCCTGGTCTTGAGGAGGTCCTCGTCTTGAGGAGGTCCTGGTCTTGAGAAGTTTCTCGTCTTGTGGAGGTCCTGGTCTTGTGGCGGTCCTGGTCTTGAGGAGGTCCTGGTCTTGAGGAGGTCCTGGTCATGAGGAGGTCCTGGTCCTGAGGAGGTCCTGGTCTTGAGG a score=2192.0 s hg17.chr17_random 1840618 21 + 2618010 CTGCCGGGCGGCAG-GCGCTGT s panTro1.chr19 1216291 21 - 82489036 CTGCCGGGCGGCAG-GCGCTGT s mm5.chr11 1319742 15 - 121648857 -------ACAACAGAGGGCCAT s rn3.chr10 667953 21 - 110733352 CT-TTGGGCAGCACAGGGCCAT a score=794.0 s hg17.chr17_random 1840639 3 + 2618010 GAC s panTro1.chr19 1216312 3 - 82489036 GAG s mm5.chr11 1319757 3 - 121648857 GGT s rn3.chr10 667974 3 - 110733352 GGT s canFam1.chr18 35728826 3 - 66173745 GGC a score=5777.0 s hg17.chr17_random 1840642 14 + 2618010 AGGCTCACTCTGTT-- s panTro1.chr19 1216315 14 - 82489036 AGGCTCACTCTGTT-- s mm5.chr11 1319760 13 - 121648857 GGGCTCAC-CTGAT-- s rn3.chr10 667977 13 - 110733352 GGGCTCAC-CTGAT-- s canFam1.chr18 35728829 14 - 66173745 AAGCTCACTCTGTT-- s danRer1.chrNA 203798790 14 - 390413307 --AGTCTTTCTGTTTT a score=1294.0 s hg17.chr17_random 1840656 7 + 2618010 -C-TGTGTN s panTro1.chr19 1216329 7 - 82489036 -C-TGTGTT s mm5.chr11 1319773 7 - 121648857 -C-CCTGTT s rn3.chr10 667990 7 - 110733352 -C-CCTGTT s canFam1.chr18 35728843 8 - 66173745 -CTCCTGTT s galGal2.chr18 4851024 7 + 8919268 -C-TCTTTT s danRer1.chrNA 203798804 7 - 390413307 TC-CCTTT- a score=99469.0 s hg17.chr17_random 1840663 55 + 2618010 GCAGCTTCATCCCCTACTGCTCC-AGTGATGTTTGGAGCGG-----GGCTTCATCCAAGTC s panTro1.chr19 1216336 56 - 82489036 GCAGCTTCATTCCCTACTGCTCCCAGTGATGTTTGGAGCGG-----GGCTTCATCCAAGTC s mm5.chr11 1319780 55 - 121648857 ACAGCTTCATCCCTTACTGCTCC-AGTGACGTTTGGAGTGG-----GGCTTCACCCAAGTC s rn3.chr10 667997 55 - 110733352 ACAGCTTCATCCCCTACTGCTCC-AGTGACGTTTGGAGTGG-----GGCTTCACCCAAGTC s canFam1.chr18 35728851 55 - 66173745 GCAGCTTCATCCCCTACTGCTCC-AGCGATGTCTGGAGTGG-----GGCTTCGTCCAAGTC s galGal2.chr18 4851031 55 + 8919268 ACAGATTCATCCCGTATTGCTCA-AGTGATGTTTGGAGCGG-----TGCCTCTTCCAAGTC s fr1.chrUn 106316131 60 + 349519338 GCAGTTTCATCCCATACTGTTCC-AGTGATGTATGGAGTGGCACCAGGCCTGCTCCAGCTC s danRer1.chrNA 203798811 55 - 390413307 TCAGCTTCATCCCATATTGTTCA-AGCGACGTGTGGAGTGG-----AGCCTCACCAAAAAC a score=21130.0 s hg17.chr17_random 1840718 18 + 2618010 TGAGAAGAGTGAGTCTCG s panTro1.chr19 1216392 18 - 82489036 TGAGAAGAGTGAGTCTCG s mm5.chr11 1319835 18 - 121648857 TGACAAGAGTGAGTCCCT s rn3.chr10 668052 18 - 110733352 TGAGAAGAGTGAGTCCCT s canFam1.chr18 35728906 18 - 66173745 TGAGAAGAGTGAGTCCCC s galGal2.chr18 4851086 18 + 8919268 TGAGAAAAGTGAGTGTTG s danRer1.chrNA 203798866 18 - 390413307 AGATCAAAGTAAGACTCC a score=4347.0 s hg17.chr17_random 1840736 8 + 2618010 --GCCTTCCc s panTro1.chr19 1216410 8 - 82489036 --GCCTTCCc s mm5.chr11 1319853 8 - 121648857 --GGCTTCCC s rn3.chr10 668070 8 - 110733352 --GGCTTCCC s canFam1.chr18 35728924 8 - 66173745 --TCCGTTTC s danRer1.chrNA 203798884 10 - 390413307 GTTACATCCC a score=21541.0 s hg17.chr17_random 1840744 316 + 2618010 agggcatggcagggcagggacggggccggatgngcagggcagggaggaggcaggacggcagggcagggATGAGGCGGGACGGCAGGG-----------------------GTTCTGGGGAAAAGCNTGAC--TCTCAGCCTTGTCGTGCTTTCAAAGCCCTTGACAGTATGTCCCAGGGTGCCTGCCCCATGCTCCCACTGCCTGCTTGTCCACAACTG----------TAGGAGGTCCTTATTTCTGAATATTCCCTGGGGAGGAGGCCCCAGCATGGCCTGGTGCACCCG---CCTTCCTCCAGTCCACCCAAGCCCCTGACCCCTTCTCAGAAGATTCCTCCCAGTCCCCC s panTro1.chr19 1216418 337 - 82489036 agggcacggcagggcagggacggggccggacg-gcagggcagggaggaggcgggacggcagggcagggATGAGGCGGGACGGCAGGGCACGGAGGAGGCCGGACAGGGGGGTTCTGGGGAAAAGC-TGAC--TCTCAGCCTTGTCGTGCTTTCAAAGCCCTTGACAGTATGTCCCAGGGTGTCTGCCCCATGCTCCCACTGCCTGCTTGTCCACAACTG----------TAGGAGGTCCTTATTTCTGAATATTCCCTGGGGAGGAGGCCCCAGCATGGCCTGGTGCACCCG---CCTTCCTCCAGTCCACCCCAGCCCCTGACCCCTTCTCAGAAGATTCCTCCTAGTCCCCC s mm5.chr11 1319861 187 - 121648857 AGCCCAT----------------------------------------------TAAGACAGGGCAGGG-----------TGGTGAGA-----------------------CTTTTGGGAAAATAG-AGACTTTCTCAACCTGTCTGT------------------AGCATGCCTTAGGG--------------------TTCCTGCTTGTCTGTGGCT------------------------CACCTGG----CCCCTGAG--GGACCCCCTAGCAGGGCCTCTTGCACTTGA--TCCCCCCCAAGTCTACCCCATCCCCTATCTCTTCCCTGGAAAG---------------- s rn3.chr10 668078 193 - 110733352 AGCCCATTAAAA----------------------------------------------CAGAGAAGGG-----------TGGTGAGA-----------------------CTTGTGGGGAAATAT-AAACTTTCATGACATGTTTGT------------------AGCATGCCTTAGGG--------------------TGACTGCTTGTCTGTGGCT-----------------CACCTGACCCCTGAGGAACCTCCAAGGAGGGCCTCCT------GCCCTTGATCCTCA---CCCCTCCCCAGTCTACCCTAACCCCTATCCCATCCCTGGAAAT---------------- s canFam1.chr18 35728932 230 - 66173745 CTGCCCCCAAAGCCCAA------------------------------------GCGGGGAGGACAGGG------------------------------------------CTTC------------TGTC--TCATAACT--------CCCTCTAATCCCCTGACGCCACGTCCCAGGGTGCCTGCCCCGAGCACCTGCTGTCAG-TTGTCCATGGCTGGCTTGGCCGCTGCAGGGATCCCGCTCCTGCGTGTTCCCTGGGGAGGGGCCCCCAGCTTAGCCTGGGACACCTGACCGCCTCCCTCCGTTCATCCCAGCCCC-----CTCCCCTGGAA------------------ a score=6979.0 s hg17.chr17_random 1841060 57 + 2618010 AGTGGGGCAAGAACTTCTCTGCCAGCCATTCTGG-GGTAGGAGGTGGTTCTCT-CTGTC-- s panTro1.chr19 1216755 57 - 82489036 AGTGGGGCAAGAACTCCTCTGCCAGCCATTCTGG-GGTAGGAGGTGGTTCTCT-CTGTC-- s mm5.chr11 1320048 52 - 121648857 ---AGGGCAGG--CCCATCCTCCTGTC-TCCTGG-AGTAGGACATCTTGCCCTGAAGTC-- s rn3.chr10 668271 51 - 110733352 ---AGCCCAAG--CCTATCCTCCTGCC-TCCTGG-GGTAGGAGATCTTGCCCT-GAGTC-- s canFam1.chr18 35729162 46 - 66173745 ----------G--AATCTCCTCCTTCCAACCTGGAGGTAGGAGGCCTTGCTCT-CTGTC-- s fr1.chrUn 106316242 59 + 349519338 ATTTGAGTAAGAACTTTTGTGCCGGTCATGATCT-AACATTCCATTTTGTTGA-GTGCCTC a score=5793.0 s hg17.chr17_random 1841117 25 + 2618010 CAGGCCCCTACCTGAGG--CCACCC-CC------ s panTro1.chr19 1216812 25 - 82489036 CAGGCCCCTACCTGAGG--CCACCC-CC------ s mm5.chr11 1320100 23 - 121648857 TAG--CTTCACCTAAAG--CTACCC-CT------ s rn3.chr10 668322 23 - 110733352 TAA--CTTCACCTAAAG--CTACCC-CT------ s canFam1.chr18 35729208 25 - 66173745 CAGG-CCCCCCTTGAAA--CCACCCTCC------ s fr1.chrUn 91781673 33 + 349519338 CACGCCTTTGCTTGAGGGTCAGTCT-CCAGCTGC a score=-4094.0 s hg17.chr17_random 1841142 7 + 2618010 --TCCCTCT------ s panTro1.chr19 1216837 7 - 82489036 --TCCCTCT------ s mm5.chr11 1320123 5 - 121648857 --T--TTCC------ s rn3.chr10 668345 6 - 110733352 --T-TCCCA------ s canFam1.chr18 35729233 7 - 66173745 --TCCCCCA------ s galGal2.chr18 4851971 7 + 8919268 --TCTCTGT------ s fr1.chrUn 91781706 15 + 349519338 GCTCTCTTTGTGCTG a score=195883.0 s hg17.chr17_random 1841149 110 + 2618010 TGCAGACGAGTACGCCTTCATGGGCGCCCTCATCATCCAGGAGGTGGTGCGGGAGCTTCTGGGCAGAGGGCTGAGCGGGGCCAAGGTGCTGCTGCTGGCCGGGAGCAGGT s panTro1.chr19 1216844 110 - 82489036 TGCAGACGAGTACGCCTTCATGGGCGCCCTCATCATCCAGGAGGTGGTGCGGGAGCTTCTGGGCAGAGGGCTGAGCGGGGCCAAGGTGCTGCTGCTGGCCGGGAGCAGGT s mm5.chr11 1320128 110 - 121648857 TACAGATGAATATGCCTTCATGGGCTCCCTCATCATCCAGGAGGTGGTACGGGAGCTCCTGGGCAAAGGGCTGAGCGGGGCAAAGGTGCTGCTGTTGGCCGGGAGCAGGT s rn3.chr10 668351 110 - 110733352 TACAGATGAGTATGCCTTCATGGGCTCCCTCATCATCCAGGAAGTGGTACGGGAGCTCCTGGTCAAAGGGCTGAGTGGGGCAAAGGTGTTGCTGCTGGCTGGGAGCAGGT s canFam1.chr18 35729240 110 - 66173745 CGCAGACGAGTATGCTTTCATGGGCGCCCTCATCATCCAGGAGGTGGTCCGAGAGCTCCTGGGCAAGGGGCTGAGTGGGGCCAAGGTGCTGCTGCTGGCAGGGAGCAGGT s galGal2.chr18 4851978 110 + 8919268 TTCAGATGAATATGCCTTCATGGGAGCGCTGATCATCCAGGAGGTCATCAAGGAGCTCGTGGGAAAAGGTCTTAGCACTGCAAAAGTGCTGCTGCTGGCAGGGAGCAGGT s fr1.chrUn 91781721 110 + 349519338 TGTAGGTGGCTACGCCTTCATGGGCTCGCTGATCATCCAGGAAGTGGTGAAGGATCTGCTGAAAAAGGGCCTGGACAACGCCAAAGTGCTGCTGTTGGCGGGAAGCAGGT s danRer1.chrNA 203800140 110 - 390413307 TACAGATGACTACGCTTTCATGGGTTCACTGATCATAAAGGAGGTCGTGAAGGATCTGCTCTCCAAAGGTCTGGATAATGCCAAGATCCTGCTGTTAGCTGGAAGCAGGT a score=2237.0 s hg17.chr17_random 1841259 3 + 2618010 GGG s panTro1.chr19 1216954 3 - 82489036 GGG s mm5.chr11 1320238 3 - 121648857 AAG s rn3.chr10 668461 3 - 110733352 AAG s canFam1.chr18 35729350 3 - 66173745 GGG s danRer1.chrNA 203800250 3 - 390413307 GAG a score=100.0 s hg17.chr17_random 1841259 1 + 2618010 G s fr1.chrUn 91781831 1 + 349519338 G a score=88461.0 s hg17.chr17_random 1841262 703 + 2618010 CAGGGCGGGGC-AGGGCTGGAGG---------TGAGGG---GTGAGGAC--GGTGTGCAG-----GGTGCATGGAAGGGGTGTGGGNGNTGGGGTTGTATGAGANGCGAGGATGGAGTGGAGCCTGTGC---AGATCTTGGCAGGTGGCTA---GGAGGGTGAGAGGCTG--------GAGC--------------------TGGGAGAACCCGCATCATTGGAGACGTCTCTGAGGCCTGGCTTCAGAGTGCTGGGTAACCAGACACTGTCCAGAGGATGCTTCTGGACGC-CATGGTTGTTGGATATAGGGGAAGGTTTGGGCTGC---AGGGACCTAAGTCGTTGGTTAGGGGTTGGCCATGGACTAATGCTCCTTCTCCAGGGCCCGGT--------AGATGAGGATCACCCC----TGTGGGTTCCTGTATCCCAGCAGGCATACANGAGNCCAGGAGACAAATGGGGNATAGATGATGGGGCCTGAGGCCACATAGTTTATCTTCATTTTCAGATAAGGNNCCTGANGGTNAAGAGACANANAGAGGAANGGGAGGAG-------GAAGGGGAGAGCCTG---------------------GCTGTG---TCAG--GGAAATG--TGGNCTGNCAGCCTGAGCCCTGGC------CTGCTCT-----------GGAG----GGGACGGCCATGGGTCTTGC------------ACGTGANCAGAGAATGCAGAATGCATCCGCAGTTCAGAACGCAT----------CAGGACTCCTGCCCCCCTCGGGGCACGGGCTGACGCTGAGCAGACTCGGGGGAG---GTGAGTGCCTCTTCCCAGCCACCT s panTro1.chr19 1216957 699 - 82489036 CAGGGCGGGGC-AGGGCTGGAGG---------TGAGGG----CGAGGAC--GGTGTGCAG-----GGCGCATGGAAAGGGTGTGGGG--TGGGGCTGTATGGGAGGCAAGGATGGAGTGGAGCCTGTGC---AGATCTTGGCAGGTGGCTA---GGAGGGTGAGAGGCTG--------GAGC--------------------TGGGAGAACCCGCATCATTGGGGACGTCTCTGAGGCCTGGCTTCAGAGTGCTGGGTAACCAGACGCTGTCCAGAGGATGCTTCTGGACGC-CATGGTTGTTGGATATAGGGGAAGGTTTGGGCTGC---AGGGACCTAAGTCGTTGGTTAGGGGTTGGCCATGGACTAATGCTCCATCTCCAGGGCCCGGT--------AAATGAGGATCACCCC----TGTGGGTTCCTGTATCCCAGCAGGCATACAGGAGACCAGGAGACAAATGGGGAATAGATgatggggcctgaggccacatagtttatcttcattttcagataaggaaactga-ggtaaagagaCAGAGAGAGGAAGGGGAGGAG-------GAAGGGGAGAGCCTG---------------------GCTGTG---TCAG--GGAAATG--TGGCCTGCCAGCCTGAGCCCTGGC------CTGCTCT-----------GGAG----GGGACGGCCATGGGTCTTGC------------ACGTGAACAGAGAATGCAGAATGCATCCGCAGTTCAGAACGCAT----------CAGGACTCCTGCCCCCCTCGGGGCACGGGCTGACGCTGAGCAGGCTCGGGGGAG---GTGAGTGCCTCTCCCCAGCCACCT s mm5.chr11 1320241 711 - 121648857 CACAACAGGCC---------------------CAAGGG---AGGAGGACTTTGTATGGAG-----GGAGCAAGGGGCTGATGTGGCA------GCTCT----GGGACATGGGCGGAATGGAGTGTGTGTGTGAGAACCTGGAAGGTAACCACCTGCAGACCTGGAATCTGTCCTCACAGAGCCCTGCTGCCTCTAGCCTCCACTGGAAGATCAGCCTCATTTGGGGCCCCTTAGAGGTCTGGCCTC--AGTGCTCTGTAGCTGGGAACTGTTTAGAGAATGCTTCTGGACTCTTAAGATTG------------------TTGGGCTGC---AGTCACCTAGAAAGTGGGTTAGTGGTCAGGTGTGTTCTGATGTCCCTTCTTAAGGATGCAGTGTCAGGGAAGGCTGGGGTGACACCAACTGGTCAGTAACTGTGTTCCAATAGGAACG--------CAGAACACGTGCTTAGACTGGATGAGGGAGACCGAAACACCGGAGTTTATCTTCTTCTTCAGATAAGGAAATTGA-------------TACAGGAGAGAAAACAGAG-------GGAAAGGAGAGTCAGCTCTGT---------------GCTCTG---CCAGTCTTAGCTG--TGGGCCAACGCTTAGAACTCTACCAGTCCTCTGCCTTCGGACCGTGAGGGAG----AGAGGCCCCTTGTGTCTTGCTTGCCTCTCTCAACATGGTTATAG---TCAGAATGCATT----GTTCAGA----AG----------CAGTGCT-------TCCTCAGGACTAGGGCTGGGGCTAAACCAGCTCTGGGTGGACAGCAAGCACC-CTCCCCAGCCACTT s rn3.chr10 668464 711 - 110733352 CACAACAGGCCCAGGGGAGGAGGACTTTTTATGGAGGGAGCAAGGGGCC--GTTGTGGCAACTCTGGAACATGGGCGGAATGGAGTG------TGCGTGGGAGAACCTGGAAGGTAACGG---CCTTGC---AGATC-TGGAATCTATCGGCACAGAGCCCTGCTGGCTC--------CAGC---------------CTCCATAGGAAGATTAGCTTCACTCGGGTCACCTTAGAGGTCTGACCTCAAAGTGTTCTGTAGCTGGGAACCGTTTAGAGAATGCTTCTGGACCCGTAAGACTG------------------TTGGACTGCAGTAGTGGCCTAGATAGTGGGTTAGTGGTCAGGTGTGTCCTGATATCCCTGCTTCAGCATGCAGTGTTGGGGAAGGGTGGGGTGAGGCCGACTGGTCAGTAGCTGTGCCCCAACAGGAACA--------CAGAATGCATGCTAAGACTGGATGAGGGAGTCCGAGATGCTGGAGTTTATCTTCTTCTTCAGATAAGGAAACTGA-------------TACAGGAGAAAAG---------------AGGGGAGAGTCAGCTCTATGTTCTGCCAGTTTTAGCTGTG------G--GCCAATGCTTAGAATGCCAG-CAGTCCTCTGCC----TCCAGACCT-------TGAGGGAG----AGAGGCCCCCTGTGTCTTGC------------CCATGG--AGAA---GCAACATGGCTAC---AGTCAGAATGCATTGTTCAGAGGCAGTGCT-------TCCTCAGGACTAGGGCTGGGGCTAAACCAGCTCTGGGTGGACAGTGAGCACCCATCTCCAGCCACTT s canFam1.chr18 35729353 541 - 66173745 CCAGGCGGGTC-AGGG----------------CCAGAG----------C-----GTGCAG-----GG----TGGGGCGGGAGGGGAG-----------------GGCAAGGAGGGACCCA-GCCTGGGC---AGG-------------------------------------------AAGC---------------------GGGAG---------------------------GGTTCTGCTCCAG-------GGTAGCTGGAAGCC-TCCAGAGGACGCCTCTGGGCTC-TGTGGGTG-CGCATGCGAGGGAAGC-TTGGACTAT---GGGGACC-------------------------------AGGGCGCCCTCTCTAACGCCTGGGGTCCCTG-TGAGTGGGATAGCACC-------TGGTCGCTGTGCCCCTGCA-ATGTGCGGGGGCCCAGAGGACATCTGTAGAGTAGAggaaggggcctgaggtcgcatatctcgccatggtttgcagatgaggaaactga-gtcagagagTGAGAGAGAAGGGAAAGAGGAGTGGGAGCAAGTGGGATGGCCTGCAACTTGGCTCATT-------GCCGTGGGCTCAG--GGCCAGG--GGCTCTGCTAGCCTCTCCTGTGCC----------TCT-----------GGGACCCCAGAAGGCCTGTGGGTCTTCC------------ACATGAT--------CCGGAATGTGTGGGCAGTTCAGGACGCGC----------CTG-----------TCCACGGCCGTGGGCCTGGGGCCG-GCGGGCTCTGG------------------------------- a score=10932.0 s hg17.chr17_random 1841965 16 + 2618010 GGCCTCACGTCTGGCC s panTro1.chr19 1217656 16 - 82489036 GGCCTCACGTCTGGCC s mm5.chr11 1320952 16 - 121648857 GGCCTCACGTCTGGCC s rn3.chr10 669175 16 - 110733352 GGCCTCACGTCTGGCC s canFam1.chr18 35729894 16 - 66173745 GACCTCACGGGCTGCT s fr1.chrUn 91781884 14 + 349519338 GGTTCCACGCGTGC-- a score=3394.0 s hg17.chr17_random 1841981 4 + 2618010 CTCC s panTro1.chr19 1217672 4 - 82489036 CTCC s mm5.chr11 1320968 4 - 121648857 TTCC s rn3.chr10 669191 4 - 110733352 TTCC s canFam1.chr18 35729910 4 - 66173745 TCCT s danRer1.chrNA 203801919 4 - 390413307 CTCC a score=321660.0 s hg17.chr17_random 1841985 200 + 2618010 TTGCAGCGCGGGGGGCACCGGGGTGCTCCTGAATGTGGACCGTGTNNNNNAGNNNCNNGNGNNGNTNNGNNNCCCAGCCATCCAGGTGCGAGGCCTGGCTGACTCCGGCTGGTTNNTGGACAACAAGCAGTATCGCCACACAGACTGCGTCGACACNATCACGTGCGCGCCCACGGAGGCCATCCGCCGTGGCATCAGGT s panTro1.chr19 1217676 200 - 82489036 TTGCAGCGCGGGGGGCACCGGGGTGCTGCTGAATGTGGACCGTGTGGCTGAGCAGCTGGAGGAGCTGGGCTACCCGGCCATCCAGGTGCGAGGCCTGGCTGACTCCGGCTGGTTCCTGGACAACAAGCAGTATCGCCACACAGACTGCGTCGACACCATCACGTGCGCGCCCACGGAGGCCATCCGCCGTGGCATCAGGT s mm5.chr11 1320972 199 - 121648857 CT-CAGCGCTGGGGGCACCGGGGTGCTGTTGAATGTAGACCGCGTGGCTGAGCTGCTGGAGGAGTTGGGCTACCCGTCTATCCAGGTGCGGGGCCTGGCTGACTCAGGCTGGTTCCTGGACAACAAGCAGTACCGGCGATCAGACTGCATTGATACTATCAACTGTGCACCCACAGACGCCATCCGCCGTGGCATCAGGT s rn3.chr10 669195 199 - 110733352 CT-CAGTGCTGGGGGCACCGGGGTGCTGTTGAATGTAGACCGCGTGGCTGAGCTGTTGGAGGAGTTGGGCTACCCATCTATCCAGGTGCGGGGCCTGGCTGACTCAGGTTGGTTCCTGGACAACAAGCAGTACCGACGGTCAGACTGCATCGATACCATCAACTGTGCACCCACGGAGGCCATCCGCCGAGGCATCAGGT s canFam1.chr18 35729914 200 - 66173745 CTGCAGCGCGGGGGGCACAGGGGTGCTGCTGAACGTGGACCGCGTGGCCGAGCAGCTGGAGGAGCTGGGCTACCCGGCCATCCAGGTGCGGGGCCTGGCGGACTCGGGCTGGTTCCTGGACAACAAGCAGTACCGCCGAACAGACTGCATCGACACCGTCACCTGTGCGCCCACGGAGGCCATACGCCGAGGCATCAGGT s galGal2.chr18 4852282 200 + 8919268 TTGCAGTGCTGGAGGAACAGGAGTGCTGCTGAACGTGGATCGTGTGGCAGAGCAGCTGGAGGAGATGGGCTACCAAGGGATCCAGGTTCGCGGCTTGGCAGACTCCGGGTGGTTCCTGGATAATAAGCAGTATCGCAGAACTGACTGTATCGATACCATAACGTGTGCTCCAACAGAAGCCATCAGAAGAGGAATAAGGT s fr1.chrUn 91781898 200 + 349519338 GTGCAGCGCGGGGGGCACCGGCGTCCTCCTCAACGTGGACCGTGTGGCGGAGCTGCTGGAGGGCCTGGGTCACACCGGGGTCCAAGTGCGCGGCCTGTCCGACTCCGGCTGGTTCTTGGACAACAAGCAGTACCACTGCACAGACTGCGTGGACGCGGCCAGCTGCGCCCCGACGGAGACCATCAAGAGAGGCATCAAGT s danRer1.chrNA 203801923 198 - 390413307 --TCAGTGCGGGCGGCACCGGGGTCTTGCTGAATGTGGACTCGGTGTCAGAGCTTTTGGAAGAACTGGGCCACACCAACATCCAGGTCAGGGGTCTGTCCGACTCAGGCTGGTTTCTGGACAACAAGCAGTACAGATGCACTGACTGTGTGGACACCATCAACTGCGCCCCTACTGAGGTCATCAAGAGAGGAATCAAGT a score=2881.0 s hg17.chr17_random 1842185 2 + 2618010 GC s panTro1.chr19 1217876 2 - 82489036 GC s mm5.chr11 1321171 2 - 121648857 GC s rn3.chr10 669394 2 - 110733352 GC s canFam1.chr18 35730114 2 - 66173745 GC s galGal2.chr18 4852482 2 + 8919268 AC s fr1.chrUn 91782098 2 + 349519338 AC a score=0.0 s hg17.chr17_random 1842187 9 + 2618010 CGCAGCGGG a score=-2747.0 s hg17.chr17_random 1842187 9 + 2618010 CGCAGCGGG s panTro1.chr19 1217878 9 - 82489036 CCCAGCGGG s mm5.chr11 1321173 9 - 121648857 CCTGGGACG s rn3.chr10 669396 9 - 110733352 CCTGGGACG s canFam1.chr18 35730116 8 - 66173745 CG-GCCGCC s galGal2.chr18 4852484 9 + 8919268 AGTCACGTG a score=4217.0 s hg17.chr17_random 1842196 7 + 2618010 GAG-GGCC s panTro1.chr19 1217887 7 - 82489036 GAG-GGCC s mm5.chr11 1321182 7 - 121648857 GGG-AGCC s rn3.chr10 669405 8 - 110733352 GGGTAGCC s canFam1.chr18 35730124 7 - 66173745 GGG-GGAC s fr1.chrUn 91782100 7 + 349519338 GAG-AGAC a score=-6076.0 s hg17.chr17_random 1842203 33 + 2618010 C-GTCCTCGTGCTGCAGCTTTGCCC--------CAGAAGGGC s panTro1.chr19 1217894 33 - 82489036 C-GTCCTCGTGCTGCAGCTTTGCCC--------CAGAAGGGC s mm5.chr11 1321189 38 - 121648857 CAGCCCCCACGCCAAAACCCTGTCT----AGTGCAAAGGGCC s rn3.chr10 669413 38 - 110733352 CATCCCCCATGCCAAAACCCTGCCT----AGTGCAAAGGGCC s canFam1.chr18 35730131 23 - 66173745 C-GCTGCCGGGCTGG------------------CGCGGGGCC s fr1.chrUn 91782107 31 + 349519338 C-GT----------GAATGTCGTCATAAAAATGTGAGGAGTC s danRer1.chrNA 203805441 33 - 390413307 C-GACTGCCTAATCCGACTATGCCT--------AGAAACAGC a score=-6111.0 s hg17.chr17_random 1842236 62 + 2618010 -----CTGGGTGGAGTGGCATCTGTGGGTGGGGAGCCCCGGGGGACGAGACCCACGGCAGCCTAACC s panTro1.chr19 1217927 62 - 82489036 -----CTGGGTGGAGTGGCATCTGTGGGTGGGGAGCCCCGGGGGACGAGGCCCACGGCAGCCTAACC s mm5.chr11 1321227 53 - 121648857 -----TGGGGTGACGTAGCATCTTAAGGGGAGGAGTACCCCGGGATCA---------CAGCCTAACC s rn3.chr10 669451 36 - 110733352 -----TGGGGT----------------GTGAGGAGTACC-CAGGATTA---------CAGCCTAACC s canFam1.chr18 35730154 35 - 66173745 -----TATGAT--------------GGGCGGGGAG------GGGGCGG-------CGCCGCCTGACC s fr1.chrUn 91782138 38 + 349519338 -----TGTGAG----------ATGATGTTGAGGAGATTATCGGGGCGC--------------TAATC s danRer1.chrNA 203805582 52 - 390413307 tTATTTTGGGTGGATCAACT------------GTGATCCGTTACACCC---CTATTGAGGACTAAAC a score=156457.0 s hg17.chr17_random 1842298 130 + 2618010 -TGTGGC-TGTGGCT-----CCAGGTACTGGAACGGGGTGGTCCCGGAGCGCTGCCGACGCCAGTTCCAGGAGGGCGAGGAGTGGAACTGCTTCTTTGGCTACAAGGTCTACCCGACCCTGCGCTGTGAGTGGGCGG s panTro1.chr19 1217989 130 - 82489036 -TGTGGC-TGTGGCT-----CCAGGTACTGGAATGGGGTGGTCCCGGAGCGCTGCCGACGCCAGTTCCAGGAGGGCGAGGAGTGGAACTGCTTCTTTGGCTACAAGGTCTACCCGACCCTGCGCTGTGAGTGGGCGG s mm5.chr11 1321280 129 - 121648857 -TGTGAT-TGT-GCC-----GCAGGTACTGGAGTGGGATGGTCCCAGAGCGTTGCCAGCGCCAGTTCAAGGAAGGAGAGGAATGGAATTGCTTCTTTGGCTACAAAGTATATCCGACTCTGCGCTGTGAGTGGCCAG s rn3.chr10 669487 129 - 110733352 -TATGAT-CGT-GCT-----GCAGGTACTGGAGTGGAATGGTCCCAGAGCGCTGCCAGCGCCAGTTCAAGGAAGGAGAGGAATGGAATTGCTTCTTTGGCTACAAAATATATCCCACTCTGCGCTGTGAGTGGCCAG s canFam1.chr18 35730189 129 - 66173745 -CGCAGCGTGT-GCC------CAGGTACTGGAACGGGGTGGTCCCGGAGCGCTGTCGGCACCAGTTCAAGGCCGGCGAGGAGTGGAACTGCTTCTTTGGCTACAAAGTCTACCCAACGCTGCGCTGTGAGGGGCCGG s galGal2.chr18 4852783 131 + 8919268 -TGCTGC-TTT-GTCTT---CCAGGTATTGGAATGGCATTGTTCCTGAACGCTGTAAGCTGCAGTTTAAAGAGGGAGAAGAATGGAATTGTTTTTTTGGGTATAAGATTTACCCCACTCTTCGATGTAAGTATTGGA s fr1.chrUn 91782176 125 + 349519338 --------TGT-GCTTCTCATCAGGTACTGGGGGGGAGTGGTACCGGAGAGATGCAGG---AAGAGCTACGAAGGAGAAGAGTGGAACTGCTTTTTCGGATATAGAGTCTTTCCATCGATAAAAAGTGAGAACGTGG s danRer1.chrNA 203805634 128 - 390413307 TGATGGT-CTTGTCT-----GCAGATATTGGGGTGGTGTGGTTCCTGAGCGATGCAGG---CAGGCTTATGAAGGAAAAGAGTGGAACTGCTTCTTTGGATATAAAGTTTATCCTACCATCAAGCGTGAGTTCACAC a score=987.0 s hg17.chr17_random 1842428 9 + 2618010 CA-GAGCGGA s panTro1.chr19 1218119 9 - 82489036 CA-GAGCGGA s canFam1.chr18 35730319 10 - 66173745 CACGGTCGGG s galGal2.chr18 4852917 7 + 8919268 ---GAGAGAG s danRer1.chrNA 203805762 9 - 390413307 CA-TACCAGA a score=954.0 s hg17.chr17_random 1842437 5 + 2618010 GCACA s panTro1.chr19 1218128 5 - 82489036 GCACA s canFam1.chr18 35730329 5 - 66173745 GTGCA s danRer1.chrNA 203805771 5 - 390413307 CCCCA a score=9562.0 s hg17.chr17_random 1842442 88 + 2618010 CAGGGCAGCAGGGGTGGCCACACTTCCTTGCTTCTGAAAATCCAGCGTGGACTCCAGTCTTCTGGGCTGGGCTTGGAGACCACGGCCC s panTro1.chr19 1218133 88 - 82489036 CAGGGCAGCAGGGGTGGCCACGCTTCCTTGCTTCTGAAAATCCAGCGTGGACTCCAGTCTTCTGGGCTGGGCTTGGAGACCACGGCCC s canFam1.chr18 35730334 63 - 66173745 CGCGGCAGGGTGGGGGGCTGGG---------------------AGCGTTGGTCTCGG----CTGCGGCCAGCCCGGAGGCCACTGCCC a score=1411.0 s hg17.chr17_random 1842530 101 + 2618010 TGGTCCAGGGAGGAGTCCGGCTGTGTACCAGGGAGGAGGCCGGCTGTGTACCAGGGAGGAGGCCGGCTGTGTACCAGGGAGGAGGCCGGCTGTGTGCCAgg s panTro1.chr19 1218221 55 - 82489036 TGGTCCAGGGAGGAGGCCGGCTGTGTGCCAGGGAGGAG----------------------------------------------GCCGGCTGTGTGCCAGG s mm5.chr11 116738536 101 + 121648857 TGCTCCAGGTAAGAAGGCAGGTGTGCTCCAGGTATGAAGGCAGGTGTGCTCCAGGTAAGAAGGCAGGTGTGCTCCAGGTATGAAGGCAGGTGTGCTCCAGG s canFam1.chr18 35730397 24 - 66173745 ----CCTCTGAGGG-------------------------------------------------------------------------AGCTGGGTCGCAGC a score=34755.0 s hg17.chr17_random 1842631 262 + 2618010 gggcctagtcgctgcggcatgcctgggacttgcctgccctcagcactgaca---cccctcagtcccaggcaaagtgggacaggtggtcaccctGCCTATACCGGTGGCTAGTGTGCTTTGGAGCTCATCCCCATGCTGCCCCTCCCTGCTGCAGGGTCCTGGGCTAGTTCCTCCCCAGCCCCACGCTCTGAGGAATGGTGAGGTTATATGCAAGGGCATCATCACCATATTTAGGTGAAAGTGGAGTCGCTGAGAACCAGGCCAA s panTro1.chr19 1218276 262 - 82489036 GGGCTTAGTCGCTGCGGCAtgcctgggacttgcctgccctcagcactgaca---ccccctagtcccaggcaaagtgggacaggtggtcaccctGCCTATACCGGTGGCTAGTGTGCTTTGGAGCTCATCCCCATGCTGCCCCTCCCTGCTGCAGGGTCCTGGGCTAGTTCCTCCCCAGCCCCACGCTCTGAGGAATGGTGAGGTTATATGCAAGGGCATCATCACCATATTTCGGTGAAAGTGGAGTCGCTGAGAACCAGGCCAA s canFam1.chr18 35730421 209 - 66173745 -----TGGcca----ggtttgcctgggactggcctgggtttagca-tcacaagtccactggggcccaggccgaccgggacagttggtcaccctGTCCACAGTCGCGG---------TTGGGAA--------CGTGCTGCCTTT------GGGCGGGGCCTTGGCTG--TCCTCCTCAGGTTCACGCC---------------------TGAAGGGACATGGTCACCAAGTTGTGGTCAAAGCGGAGACCCTGGGAGCCAGGCCAA a score=3966.0 s hg17.chr17_random 1842893 54 + 2618010 NGTCATGGAGGGGNTAAACAGAGCCCGTCTNCAANGAAANGCAGTTTANTGATT s panTro1.chr19 1218538 54 - 82489036 GGTCATGGAGGGGTTAAACAGAGCCCGTCTTCAAGGAAAGGCAGtttattgatt a score=3805.0 s hg17.chr17_random 1843147 122 + 2618010 AGGNGANGGCGCGNCGGCGGGAGGNNNAAC----------TGCGCATGCGCAACCCGCGCGCCGTCGTCCCTGGCANCACTGGCTGCTCTAGCGCCTGGCGGGGTCTCACGGGCG--GGCCTGGGCGCACGGCC s rn3.chr10 110039542 128 + 110733352 AGGGAAAGGCGAGGCGGCAGCAAGGCGAGCGCGTTCCCATCACGCCTGCGCAGCCC-CGCGCCGTCGCCCCTGGCAACGCCCGCCGCGC-----CCTGGCAATGTCTCGCGGGAGTAGTCCCGGGCGCTCGCCC a score=56505.0 s hg17.chr17_random 1843454 602 + 2618010 CAGGCAGAGGCGCTCTTGCGTCAGGAcggcgccgccggggccccgcgATTCCAACTCGGGGGTCCCGGAGCGGCGCGGGGCGGGGACGGCCTGGCAGCTCCCAGCAGCGAGGGGCGATCCCCGCCCGCGCAGCAGACCCCGAGCTGCCCAGGCCCTTCCTGCGCCACGTGTACCCAGAGCTCCGCCCGGGGGAGACTTCGCTGCTTGTTGGAGATGCCCAGCGGTAGGGGGCGAGGACTCGGGAGGAAGATAAACGGGGGATCCCGTGTCTGGACTTTCTCCTCCACCCTCTTCCCTTCGCAGCTGTGAATCCTGGGAGGGGAAGGGTGGCCGCCCCGCCAGCAGGTGAGCGGGGAGGAAGGGGCGGGGACGGGCTGTGGGGTCCTCCTGGGCTCCGTCCATGAACAGGCCGGCCCCAAAGTCCCGAAGCCGTGAGGTGTAAGGCTCAGAAGCGTCCCTCCGCCTGTCCCTGCCAGACCCCAGGAACTCCTCCGAGCCCCACAGCACGTTGTCGCCGTGTGCGCTGTGGGGCTGCGTGTGGTTCTTACGGTGGTGTCCTTAGTCGTCGGGGACCTGCTCCCCCTGCTCTGGACACAGCCCNG s panTro1.chr19 81244077 601 + 82489036 CAGGCAGAGGCGTTCTTGGGTCAGGGCGGCGCCGCCAGGGCCCCGCGATTCCAACTCGGGGGTCCCGGAGCGGCGCGGGGCGGGGACGGCCTGGCAGCTCCCAGCAGCGAGGGGCGATCCCCCCCCGCGCAGCAGACCCCGAGCTGCCCAGGCCCTTCCTGCGCCACGTGTACCCAGAGCTCCGCCCGGGGGAGACTTCGCTGCTTGTTGGAGATGCCCAGCGGTAGGGGGCGAGGACTCGGGAGGAAGGTAAATGGGGGATCCCGTGTCTGGACTTTCTCCTCCACCCTCTTCCCTTCGCAGCTGTGAATCCTGGGAGGGGAAGGGTGGCCGCCCCGCCAGCAGGTGAGCGGGGAGGAAGGGGCGGGGACGGGCTGTGGGGTCCTCCTGGGCTCCGTCCATGAACAGGCCGGCCCCGAAGTCCCGAAGCCGTGAGGTGTAAGGCTCAGAAGCGTCCCTCCGCCTGTCCCTGCCAGACCCCAGGAACTCCTCCGAGCCCCACAGCACGTTGTCGCCGTGTGCGCTGTGGGGCTGCGTGTGGTTCTTACGGTGGTGTCCTTAGTCGTCGGGGACCTGCTCCCACTGCTCTGGGCACAGCCC-G a score=7330.0 s hg17.chr17_random 1844056 48 + 2618010 AGTCTCACAGGCTCTAGGGGCATGATATGGTCCTGGCGTGGCTTCCGA s panTro1.chr19 81244678 48 + 82489036 AGTCTCACAGGCTCTAGGGGCATGATATGGTCCTGGCGTGGCTTCCGA s canFam1.chr18 30424236 48 + 66173745 AGTCTCAGAGACTCCAGGGCCCTAAGACATCTGGGCTGTGACTCTCAA a score=102978.0 s hg17.chr17_random 1844104 982 + 2618010 GGCCTCAACCTTAGTGTACAA-----------AACAGCACACGGGG------CCCTGAGGCCAGGAGTGCAGCTCCGTCTCCTGCCTCTCCTCCCTGCTCGCGTCCTCATCCTACCACACCACACTGGGCTGGCGAGGGGAGGGCGCCCTGAGCCGCTGGGCATCCTGCTCCGCGGGAGGGTGAAGTCGTGC--ATTGCTGGGCGGTGAGGGCTAGGTCCACACAGCGGGGACCTGGCGGGCCCCCGAGTCTCCTCAGGACCCGCCCTNCCGTGCCACACAGCGGGAGCT-GGAGCCACGGTGCCGTCAGGAGCCAGGGGTGATTGGNCCCTGGGGCTGGCAGCCCCCNACCCCGCGGGCAGACGCTCACCAGGNCTGTCCCCACTCACTCCCACA-CCCCAACTCC----TCCTCACAGGGTCGAGCCC-GCTCTCATTTGCACCTCCGC-GCGAATTTGGAACGGATTTATGAATCGTC---------------CTCACTGCGGTGCTGTCTTCTCCTGGGAAGGAGCCTCAG--TCCTCCCCTCCCTGGGCA-------------------------------------------------------------------CTGTCATAGAGATGGGCAGGACG-------------------------GGCTGGGGA-------------------------------------------------------GGACA---------------------------------CTCAGGGAGCTG---------------------------CCCAGGCTCCTTTGCTGCCCNCTCACCCCAGAATCTTCTTGGGGTGGGTGGG-----------------GTCCCAGNGCACCTGCAGAGTAGCATACGGT-----GGCTTGT---AGAAAGAGTATCGAGGGAGGGGAGGTGCCACGTGGAAACAGCCCA---AGCCAAACCCCTAGGACCTGTCTCCCTGTCCTCCTAGAGAGCTGAAGGTGTTCCGTGGTCAGTGAGGGCTGGCACTGGCTCTGCACGAAGATCTCCTCACCTCCCCAGCGGCTCCTGGCCAGCTCCCCACGGAGAGCCCAGGACACTTGTCCCTGGACACAGTGGTGCAGCCATGCTTGGGCCAAACCATGAGGCCACCAGAACCGCGAAAGGCTACTGTACTGAGAGGGATACTGCGAGAGAGGCCCACANGGTTTCCAAGCATCCCTCTCACTCCGCACACTCAT s panTro1.chr19 81244726 974 + 82489036 GGCCTCAACCTTAGTGTACAA-----------AACAGCACACGGGG------CCCTGAGGCCGGGAGTGCAGCTCCGTCTCCTGCCTCTCCTCCCTGCTCGCGTCCTCATCCTACCACACCACACTGGGCTGGCGCGGGGAGGGCGCCCTGAGCCGCTGGGCATCCTGCTCCGCGGGAGGGTGAAGTCGTGC--ATTGCTGGGCGGTGAGGGCTAGGTCCACACAGCGGGGACCTGGCGGGCCCCCGAGTCTCCTCAGGACCCGCCCT-CCGTGCCACACAGCGGGAGCT-GGAGCCACGGTGCCGTCAGGAGCCAGGG-TGATTGG-CCCTGGGGCTGGCAGCCCCC-ACCCCACGGGCAGACGCTCACCAGG-CTGTCCCCACTCACTCCCACA-CCCCAACTCC----TCCTCACAGGGTCGAGCCC-GCTCTCATTTGCACCTCCGC-GCGAATTTGGAACGGATTTATGAATCGTC---------------CTCACTGCGGTGCTGTCTTCTCCTGGGAAGGAGCCTCAG--TCCTCCCCTCCCTGGGCA-------------------------------------------------------------------CTGTCATAGAGATGGGCAGGACG-------------------------GGCTGGGGA-------------------------------------------------------GGACA---------------------------------CTCAGGGAGCTG---------------------------CCCAGGCTCGTTTGCTGCCC-CTCACCCCAGAATCTTCTTGGGGTGGGTGGG-----------------GTCCCAG-GCACCTGCAGAGTAGCAGATGGT-----GGCTTGT---AGAAAGGGTGTCGAGGGAGGGGAGGTGCCGCGTGGAAACAGCCCA---AGCCAAACCCCTAGGACCTGTCTCCCTGTCCTCCTAGAGAGCTGAAGGTGTTCCGTGGTCAGTGAGGGCTGGCACTGGCTCTGCACGAAGATCTCCTCACCTCCCCAGCGGCTCCTGGCCAGCTCCCCACGGAGAGCCCAGGACACTTGTCCCTGGACACAGTGGTGCAGCCATGCTTGGGCCAAACCATGAGGCCACCAGAACCGCGAAAGGCTACTCTACTGAGAGGGATACTGCGAGAGAGGCCCAC-GGGTTTCCAAGCATCCCTCTCACTCCGCACACTCAT s canFam1.chr18 30424397 1118 + 66173745 GGCCATGACTTTTATAGCCAACTCGATATACTAGCAACA-ACGAAGGCCTGCCCTTGAGGACGGAAATGCAGTCCTGTGGCCTCTAGCTCCACC-----AGCCTCCCCA--CCGCCACCACCAGCTCAGTTCTCCAGG-------------------------TCACACCTGGTGGAGACGTAGAGTCTGACCGACTGCTGGGC--CAGGGGCCA-CTCCACACAGCAGGACCCTGGCAGGCCACGCAGGCTT-----GACCTG-------GTGCCGCCCAGCTCAAGCCGGGAATCACGATGCCATCAGAAAATAGAAGCAACTGA-CCCCGGGGCTGGGA-------CCACCATGGGTGCAAGCTCACTGGC-TAATCCGCTCACGTTCCCACACCCCCAACTCCTCAGTCCTCACAGGATGGAGTCTGGCTGCCATTTATACACGAGAGGTGACTGAGGGGCTGCTTTATCAGCCACCTGCTGCTCTGCTTTTCTCCCCAAGGAGGCTCCTACTCTCAGGAAGGACTCTCCTCCTCCTCCCCCCACTGGGAACACAGTTGGCCACTTCTTCCATCTTGGAAGAGGGGACAGGGAGGCAGGGGGATGCGCCCACCCAGGGCCACCAGAGAGGTCGATGGGAAGTGAATTGGGGCCCAATGCACCTGGAGGCCAGTGAGAGGATGTTAGGGCTGCTTCCTGCAGATGGCCCCAGGCCCTGAGGTCAGCCCTCCGGACACGTGATGGGATGTAGTGCTGCCCACCTTCTCATCTCTGGGACCTGTGTGGAGGGGAATGTCCCAGGAGACAACCCAGGCCC---TGCTGCCCTCTCACCCAAGACTCTTCTCCAGGGGCGTGGGCAGAATATGTGAACAGTGTCCTGA-TCACCTATAGAGTAACAGTGGGTTTGTCTGCATGTCTGGGGGAGGCCATCGAGGAGGAGGACGTGCCACGTTGAAACAGCCAAGATACCCAAGCCTCCAGGAGCAGTCTCTGGGTCCAGCTGAAGAGCCCGAGGGAGTCCATGGTGGGT--------------------------------CTCAGCTGCCCTAAG----TTTGGCTGCCTCCCGCCCAGGGTCCAGGACGGTTGTCCCCGGGAACAGCACTGCGGCCTTGCTTGGG------AGTGAGACCTCAAG------------------------------------GAGACAGGGCCAC-AGGTTTC--AACATCCCTGCTGGTCCACACA-GAGT a score=15085.0 s hg17.chr17_random 1845086 121 + 2618010 CTCCACGACCGGCTTT-AA-----GTGCGGCCT---------------TGAGGCCTGGCTCCCNT------GTTTGGACTTCTCTGCACCTCCAGGAGCTCACTTCCCGTCACAGCTGGATGCC-TCCTCCCGCAGGCACCTCCCGGGC s panTro1.chr19 81245700 121 + 82489036 CTCCACGACCGGCTTTTAA-----GTGCGGCCT---------------TGAGGCCTGGCTCCC-T------GTTTGGACTTCTCTGCACCTCCAGGAGCTCCCTTCCCGTCACAGCTGGATGCC-TCCTCCCGCAGGCACCTCCCCGGC s canFam1.chr18 30425515 133 + 66173745 CACCATGACCAGCTTC-CA-----GAGCTGCCTGTTGAGGGCCAACGCTCAGACCCGGGTCTC-TGGCCTGGTCTGGCCTTCGCTGGGCCTCCAGCACTCTGCTTCCTGCTGCAGCTGGATGCCGCCCTCCTGCTGGTGC--------- s danRer1.chrNA 233458603 111 + 390413307 CTCCAGTGTCGGCTCC-AGCCCCTGAGCGCCCT---------------CCAGTGTCGGCTCCA-G-------------CCCCTGAGCACC-------GCTCAGTGCCGGTCCCAGTCCGGCTCC-TTGCCCTGCCGGCACCACCCAGAC a score=-2573.0 s hg17.chr17_random 1845207 218 + 2618010 -----ATCCTCCCGCCCCAGGCTGCA---CCTTCTGTGGGACTGGCCCCCGCAGGCACCTCC----CGGGCACCCTCCCGCCNCCAGGCTGCAGCTTCTGTGGGACTGAGCCCCGCAGGCACCTCCCCGGCAT--CCTCCCGCCCCAGGCTGCACCTTCTGTGGGACTGAGCCCCGCAGGCACTTCCCCGGCATCCTCCCGCCCCAGGCTGCAGCTTCTGTGGGACTGACCT s panTro1.chr19 81245821 217 + 82489036 -----ATCCTCCCGCCCCAGGCTGCA---CCTTCTGTGGGACTGGCCCCCGCAGGCACCTCC----CCAGCATCCTCCCGCC-CCAGGCTGCACCTTCTGTGGGACTGAGCCCCGAAGGCACCTCCCCGGCAT--CCTCCCGCCCCAGGCTGCAGCTTCTGTGGGACTGACCCCCGCAGGCACCTCCCCGGCATCCTCCCGCCCCAGGCTGCAGCTTCTGTGGGACTGACCT s canFam1.chr18 30425648 63 + 66173745 ---------------------------------------------------------CCCCC----CAGGTGTCCTCCCAAC-----------------------------------------TCCACAAC-------CCCCCTTCAGCCTGCACCCTC--------------------------CACCAGCA----------------------------------GATCC s fr1.chrUn 297801958 208 + 349519338 -----ATTCTCCCAGCCAGGGTGGGAGTGTCCTCTGTGGGAGTGTCCTCTGCGGGAGTGTCCTCTGCAGGAGTGTCCTCTGC----GGGAGTGTCCTCTGTGGGAGTGTCCTCTGTGAGAGTGTCCTCTGCAGGAGTGTCCTCTGCGGGA-GTGTCCTCTGTGGGAGTGTCCTCTGTGAGAGTGTCCTCTGCG--------------GGAGTGTCCTCTGTGGGAGTGTCCT s danRer1.chrNA 233458714 198 + 390413307 GTCTTTCCCTGCCGGCCCCAGCCCGG---CTCCTTG----------CCCTGCCGGCACCACC----CAGACGTCTTTCC--C----TGCCGGCACCACCCAGACGTCAAGCCCTGCCGGCCCCACCCCGGC-------TCCTTTCCCTGCCGGCACTTACCAGACGTTTAACCCTGCCGGCCCCAGCCCGGCT----CCTTGCCCTGCTGGCACCTACCAGACGTTTAGCCC a score=4729.0 s hg17.chr17_random 1845425 55 + 2618010 -TAAGACCCCA--TCGGTTCCT-------CCT-GAGAGCAGCAGAT------CTCAGCCAGATGCTG------------NCCGG s panTro1.chr19 81246038 54 + 82489036 -TAAGACCCCA--TCGGTTCCT-------CCT-GAGAGCAGCAGAT------CTCAGCCAGATGCTG-------------CCGG s canFam1.chr18 30425711 68 + 66173745 -TGGGACCCCA--CTGGCTTCT-------CCTGGAGTTCAGCAGGC------CCCCACCTCGTACGGAGACTCAGGGCACACGG s danRer1.chrNA 233458912 71 + 390413307 TGCCGGCCCCAGCCCGGCTCCTTGCCCTGCCG-GCACCTACCAGACGTTTAGCCCTGCCAGCCCCAG------------CCCGG a score=1577.0 s hg17.chr17_random 1845480 21 + 2618010 GAGGGAGGTGCTAGCGTCCNA s panTro1.chr19 81246092 20 + 82489036 GAGGGAGGTGCTAGCGTCC-A s canFam1.chr18 30425779 17 + 66173745 GATATGGCTGCT---GTCC-A a score=19644.0 s hg17.chr17_random 1845501 132 + 2618010 CACCCAGAC--GGGTCCAGTCCAGCCCTGCTCTCCCTGGTCTCCAG----G-CAGGGCCCTCCCNAGGGTGGACATTGCCCATCTCTGCCTGGCCAGGGGCTGC----TGACCCACTGGTTCCAGAGTCTGA--GCCTGTCCTGC s panTro1.chr19 81246112 133 + 82489036 CACCCAGACAGGGGTCCAGTCCAGCCCTGCTCTCCCTGGTCTCCAG----G-CAGGGCCCTCCC-AGGGTGGACATTGCCCATCTCTGCCTGGCCAGGGGCTGC----TGACCCACTGGTTCCAGAGTCTGA--GCCTGTCCTGC s canFam1.chr18 30425796 124 + 66173745 AACT--GAC--------TGACTGGCTCTGCTCCCACAGGTGTCCAG----GCCAGGGCCCTCCG-AGGATGGACCTCTTCCTTCTCTGACTAGCCAAGGGCTGC----TGGTCCTTTTGTTCTGCAGCCTGA--GCCCAGCGTGC s danRer1.chrNA 233459002 129 + 390413307 CACCCAGAC----GTCTTGCCCAGCCGGCCCCAGCCCGGCTCCTTGCCCTG-CCGGCACCTACC-AGA--------CGTTTAGCCCTGCCGGCCCCAGCCCTGCTTTTTGCCCTGCCGGCCCC--AACCAGACGTCTTGCCCTGC a score=17693.0 s hg17.chr17_random 1845633 111 + 2618010 ACAAGTACCATGGACAGGGGTCAGCCGGGCACTGAAGAGGCGTGGCAGAATTGGGCAGGGCAAGGGCCCCAGCT-GGCAAGCTGGAGTC-AGGGCAA--TTCCAACCAAGAAACT s panTro1.chr19 81246245 111 + 82489036 ACAAGTACCATGGACAGGGGTCAGCCGGGCACTGAAGAGACGTGGCAGAATTGGGCAGGGCAAGGGCCCCAGCT-GGCAAGCTGGAGTC-AGGGCAA--TTCCAACCAAGAAACT s canFam1.chr18 30425920 114 + 66173745 ATGGGGGCCACAGGACAAGGTGAGCCTGGTACAGGAAAGGACTGGCAGAGAGAAGCAGGGCAA-GGCCCCATCTAGGCAGGCAGGAGCCGAGGGCAAGGTTCCAGTTAGGAAACT a score=26977.0 s hg17.chr17_random 1845744 311 + 2618010 GCGGCAggccgggtgcagtgtctcaagcctataatcccangcactttgggaggcagtgggagaatcgcttgagcccgggagtttgagaccagcattggtaacatagagac--cctatcgctacaagaaaaaaaaaaaaaaaaa-gctgggcatggtggtgcacacctgttgtcccagctattcaggaggctgacgtgggaggattgcttgtgcccanggggttgcaggctgcagtgagctgtgatcataccactgcactccagcctgggcgacagagaacctctctaaaaaaaaa-ggaaaatgaaaaataaaTG s panTro1.chr19 81246356 313 + 82489036 GCGGCAggctgggtgcagtgtctcaagcctataatccca-gcactttgggaggcagtgggagaatcgcttgagcccgggagtttgagaccagcattggtaacacagagacaccctatcgctacaagaaaaaaaaaaaaaaaaaagctgggcatggtggtgcacacctgttgtcccagctactcaggaggctgacgtgggaggattgcttgtgccca-ggggttgcaggctgcagtgagctgtgatcataccactgcactccagcctgggcgacagagaacctctctaaaaaaaaaaggaaaatgaaaaataaaTG a score=25857.0 s hg17.chr17_random 1846055 216 + 2618010 GGGGCAGAAGCTGAGCCAAGCAGAGGCGGGCAGCTCCTCCTCCAGGGCCCACCTGGCCTGCTGGGGA------------CTCACTCCAAACCGCTTCATTTTTGGAGGGGGCTTTCCAGGAC-TGAGAGGTGTCAGAGCTGCTGGTGACAGGAGCAGGGAAAGC---ACCATCTGGCCAGCCCCCAGGGGCCCCCTGTAG-GGTTCCTCTGCCTGGCAGCGTTTCGACGCTTC s panTro1.chr19 81246669 190 + 82489036 GGGGCAGAAGCT--------------------------CCTCCAGGGCCCACCTGGCCTGCTGGGGA------------CTCACTCCAAACCGCTTCATTTTTGGAGGGGGCTTTCCAGGAC-TGAGAGGTGTCAGAGCTGCTGGTGACAGGAGCAGGGAAAGC---ACCATCTGGCCGGCCCCCAGGGGCCCCATGTAG-GGTTCCTCTGCCTGACAGCGTTTTGACACTTC s canFam1.chr18 30426034 226 + 66173745 GAGGCAGAAGCTGGACCAAGCAGAGGGAGCTGGTTCTTCCACCA-GGCTCACCTGGCCCACTGAGCAAAGGGCAGGAAGTTCATTCCAGGCTCTGTCCCCTTGGGGAGG-----TCCAGGACATGGGAGGTATCAGATCTGGC-ACCATGGGAGCCAGGAAAGCTGGCCAAGCTGACCCTCCCCAGCGCAACCCCTGTGGTGGCTTCTCTAGGTGGTAGCATTGCAGCGCTCC a score=44358.0 s hg17.chr17_random 1846271 518 + 2618010 TTNGGCAGGATCCTTGGGTCCTTGGCCCCCGGCACCATCTCCCTCCNTTGACCTGCTGAGGCCCACATAAAACATGTTGCTACTTNGGGGTNGGGCCCGTCCTCACGCTCTGTGGCTTCCTGGGTGTCCACCTCCCCACAGCCTGCCTCACCTACCTCCCCAGACTTCTCACGCACNGTCAGGAGCCTCCTGTGGACTCTGGCTCTACCTGCCTCTGGCCTCTGCTTAATCAGGAACCCACAGTGGGAAAGCTCCTAGGGCCCGCCTGCTGAANGCAAACGCCTNCCTTGCAAAGCCCGTCTGCAGCCCCCCACACACCTNCCTCACCTCNCTGTGCTTCCTCTGGAGCCCAAGACCAGTCTGCCTCACTTGAAACCCGCGTCGCCTGCTGGCTTCCCTTGTGTCCCCGGACCAGAAGCACCTTTGGCAGCCCCGCGCCCCTCGTCTTGCTCTGCGTCAGCACCTGAGAATGGGCGCTAGCAGGGAAACTGGCTTTGAGGGGAATGGTCGGGGCAGCT s panTro1.chr19 81246859 510 + 82489036 TT-GGCAGGATCCTTGGGTCCTTGGCCCCCAGCACCATCTCCCTCC-TTGACCTGCTGAGGCCCACATAAAACATGTTGCTACTTGGCG--TGGGCCCGTCCTCACGCTCTGTGGCTTCCTGGGTGTCCACCTCCCCACAGCCTGCCTCACGTACCTCCCCAGACTTCTCACGCAC-GTCAGGAGCCTCCTGTGGACTCTGGCTCTACCTGCCTCTGGCCTCTGCTTAATCAGGAACCCACAGTGGGAAAGCTCCTAGGGCCCGCCTGCTGAA-GCAAACGCCT-CCTTGCAAAGCCCGTCTGCAGCCCCCCACACACCT-CCTCACCTCCCCGTGCTTCCTCTGGGGCCCAAGACCTGTCTGCCTCACTTGAAACCCGCGTCGCCTGCTGGCTTCCCTTGTGTCCCCGGACCAGAAGCACCTTTGGCAGCCCCGCGCCCCTCATCTTGCTCTGCGTCAGCACCTGAGAGTGGGCGCTAGCAGGGAAACTGGCTTTGAGGGGAATGGTCGGGGCAGCT a score=28599.0 s hg17.chr17_random 1846789 231 + 2618010 TTGGTCCTGGGACAGGCGTGTGGCCTGTGGGACAATCTCTTCTGGGGGCACCTCTGCCCAGGTGGGAGGAGTTGCCAGGGTCTCCCAGCACTGCCAGGCGCTTTGCTGGGGCAGGGGGTTATTCTATTGCTCACAGCCCTGACACAAGGGCATTCCCCACCCGCCCTGATGCCCACATCCACCCATACAGGAGGGGGCCTTCAGGGGAGCCTGCAGGGACTCCCGGCCCAG s panTro1.chr19 81247369 231 + 82489036 TTGGTCCTGGGACAGGCATGTGGCCTGTGGGACAATCTCTTCTGGGGGCACCTCTGCCCAGGTGGGAGGAGTTGCCAGGGTCTCCCAGCACTGCCAGGCACTTTGCTGGGGCAGGGGGTTATTCTATTGCTCACAGCCCTGACACAAGGGCATTCCCCACCCGCCCTGATGCCCACATCCACCCATACAGGAGGGGGCCTTCAGGGGAGCCTGCAGGGACTCCCGGCCCAG s canFam1.chr18 30426265 150 + 66173745 TTGGTCCTGGAA-AGGCCGGTGGCCT-------AACCTCTTCTGGGAACCCCTTTTCCCAGG-------------------------------------GCTCTA-TGAGAGAAGGGGTGACT------------------------GGCTGCTCACTGCCCACCCTCGTGCCCACCTCCATCCACACGGAGAAG------CAGGGCA-----CAGGCACTCCAGGCCCAG a score=76441.0 s hg17.chr17_random 1847020 839 + 2618010 CACCNGTCCATCTGTGTCCCCCGCTTAGCTCCTGCACTGCCAGATCTCAGCCAGACAGCAGGGACTCACCCCACCTACCGTCCCCTTTGTGCCTGGGTGTGGTGGGTACTCGNTTTTATGGGGAGTGGCCAGGACTCTTGCCAGGGGGAGAGTGGCGGTGGAGGATGTACCCATGCCATCTGCCCTGCCGCAGCGTTTCCTCCCTGTTCCCCTGCATGTCTTCCCTCCCTCGGGGGAAACGCAGGATTCTGTTCCCCAAGCGCCCTCTACACGCCCCATATATACCAAGCATGGTTCTGCAGTGAGCCTATGGGGTCTCTGGAAATGAGTTCCCGGGATAAGTTCCAGAAAGTTGCTCAGCTCTCCTAACCCCTGCACACCCTGGAGCCCCCTGCATACCCTGACTCCTGGCGCACCTGGGACCCCCCTGCACACCCTGACACCCTGCTGCTACCCAGCCCAGCTCCCCTCACACAGTGTGCACTGCCTCTGGAGGGAAGGGGGCCTCATCTTGCTGTCTCCATACTCAGTAACTATGTGTTGGTTGAAGGAACCAGAGCACCCCTGGCCCTTGTAACCCAACCCTCAGCAGCTCCTCCAATCCTGTGGGCCTCCTGgnaatgggtgattgtatgtgtccacttgactgggctacagggtgcctgagtgtttggtcaaacattattctgtttctggcaggggtggggnaggggttgcatgagactaacatttgaatctgtagacttttgcattagattacattgacattttaatcagtaaggcagatgccctccaagatgtgggcgggccttgtctaatcagttgaaggcctCCACTAT s panTro1.chr19 81247600 835 + 82489036 CACC-GTCCATCTGTGTCCCCCGCTTAGCTCCTGCACTGCCAGATCCCAGCCAGACAGCAGGGACTCACCCCACCTACCGTCCCCTTTGTGCCTGGGTGCGGTGGGTACTCAGTTT-ATGGGGAGTGGCCAGGACTCTTGCCAGGGGGAGAGTGGCGGTGGAGGATGTACCCATGCCATCTGCCCTGCTGCAGCGTTTCCTCCCTGTTCCCCTGCATGTCTTCCCTCCCTCGGGGGAAACGCAGGATTCTGTTCCCCAAGCGCCCTCTACACGCCCCACATATACCAAGCATGGTTCTGCAGTGAGCCTATGGGGTGTCTGGAAATGAGTTCCCGGGATAAGTTCCAGAAAGTTGCTCAGCTCTCCTAACccctgcacaccctggagccccctgcacaccctgactcctggcacaccttggacccccctgcacaccctgacaccctgcTGCTACCCAGCCCAGCTCCCCTCACACAGTGTGCACTGCCTCTGGAGGGAAGGGGGCCTCCTCTTGCTGTCTCCATACTCAGTAACTATGTGTTGGTTGAAGGAACCAGAGCACCCCTGGCCCTTGTAACCCAACCCTCAGCAGCTCCTCCAATCCTGTGGGCCTCCTGG-Aatggctgattgtatgtgtccacttgactgggctacagggtgcctgagtgtttggtcaaacattattctgtttttggcaggggtgggg-aggggttgcatgagactaacatttgaatctgtagacttttgcattagattacattgacattttaatcagtaaggcagatgccctccaagatgtgggcgggccttgtctaatcagttgaaggcctCCACTAT a score=4564.0 s hg17.chr17_random 1847859 30 + 2618010 TCCACCCACAGTAAC-CACCCTCCCACACAG s panTro1.chr19 81248435 30 + 82489036 TCCACCCACAGTAAC-CACCCTCCCACACAG s rn3.chr10 110045335 31 + 110733352 TCCTCCCCCAGTATCACAGTCCCTTGTACAG a score=78364.0 s hg17.chr17_random 1847889 596 + 2618010 GCAGGGCCTCCCTCCTCATGTGGCAGACAG--AAGTCAG-----GACACTGGGGG-----CTGGAAACCAACTTATAAAACTGAAAGGGCCAGGACAGAACTGATAGCACCCTCCCAGGGAGGTCAGGAGCAGGAGGTGGTGGCCACAG-AAGTTCACCAGCAGCCCAAGGAGCCCTTTCCCCAAATGTCCA-----TGGGATCTGCGTGCTTGGCAGCCAAGAGGGGCTGTGGCCCTTCACGCTGGACTTGGGATGCCT-GGACCCTCTGGCCCT-----TCTCACACGGGAAGGAGAGGTTTCTCCCTGAATGGAGGGCAGGGAGGGGCCGGGAGGGGGCGTGGGATCCCACCTCTGCTGAGCCTTCAC-AGAGGGGGTCCTTGACCTTTGCTCTCAGGAAGGAGCC------CGTGCCNAGCTGATACTGGAGTAGGAGTGGGTGAAGACCCTC-CGGGCTCCCGAG---CTCTAGAGGAAGGTGGTCCTGACATGGTTTGGGAGCAGAGAAGAAAGGAGGTTGAGGTTGNGGGAATCCACCCCTGTTCTGGGCTGGGAAGCACTTGCAGACC-ACAGAGATTTCCAGTGGGAAGTGATGTGGCCCCTCCCTGGCTATGTCCCTGGCTG s panTro1.chr19 81248465 595 + 82489036 GCAGGGCCTCCCTCCTCATGTGGCAGACAG--AAGTCAG-----GACACTGGGGG-----CTGGAAACCAACTTATAAAACTGAAAGGGCCAGGACAGAACTGATAGCACCCTCCCAGGGAGGTCAGGAGCAGGAGGTGGTGGGCACAGGAAGTTCACCAGCAGCCCAAGGAGCCCTTTCCCCAGATGTCCA-----TGGGATCTGTGTGCTTGGCAGCCAAGAGGGGCTGTGGCCCTTCACGCTGGACTTGGGATGCCT-GGACCCTCTGGCCCT-----TCTCACACGGGAAGGAGAGGTTTCTCCCTGAATGGAGGGCAGGGAGGGGCCGGGAGGGGGCGCGGGATCCCACCTCTGCTGAGCCTTCAC-AGAGGGGGTCCTTGACCTTCGCTCTCAGGAAGGAGCC------CATGCC-AGCTGATACTGGAGTAGGAGTGGGTGAAGACCCTC-CGGGCTCCCGAG---CTCTAGAGGAAGGTGGTCCTGACATGATTTGGGAGCAGAGAAGAAAGGAGGCTGAGGTTG-GGGAATCCACCCCTGTTCTGGGCTGGGAAGCACTTGCAGACC-ACAGAGATTTCCAGTGGGAAGTGATGTGGCCCCTGACTGGCTATGTCCCCGGCTG s rn3.chr10 110045366 460 + 110733352 TCA-GGCCTCTCTCTGTAGGTAACAAGTAGGTAAATTGG-----AGCTTTGGGGGATTTTTTTTTTTTTTAATTATTCAACTGAAAGTACAGGAAGAGAAGTAACAGCATTTGTT----GAGTCGAGGAACATG------------CAGGAGTTTCGTCGGCTACCTGAGAAGTTCTTTTCCCAAATGCCTA----GTGGGATT------ATTGGTA------AAGCATTAAGTCCCT------AGAAGGAGGGAGGTAC-AGATTGTCTGGGACTAGCTGGCTGTCACAGAAAGGAA------CCCTGTGAGTGGATCACAGGAAGGGACCGTG-----------------------GCTAAGCC---------------------------------------AGCT-------------AGCTGACCCCAAAACTAGGGAGGATAAAGACCCCCACAGG--CCTGAG---CTCCAGGGGAAGCTG------------------------------AAGAGGTGGCGGACT-GAGCACCCA-CCCTGTTTCCAGCTG----GCACTTGAGTATCAATGGAGGTCCCTAGTTGTAAGTGATGT--TCCCTTCCCAGCTG---ACCTGGCTG s canFam1.chr18 30426778 559 + 66173745 GCTGGGGTCCCCGCAACATGAGGT-GACA---AAGTTAGAAACAGGCACCGGG-------TTGGAAACTAATGTATTTCACCGAAAAGGTTGGGGACAGAGTGATAG-ACTCTGTAAGTCAGGTCGGGAATGGGCAGTAAGGCCCTCAG-AGATTGG--GACCACCCAAGGAGCCCTTTCCTCAAATGCCAAAAATAAGGCATA------GTTGGCA----------GCTGTGGTCTGGC---CTGGGCTCAGGATGCTTGGGACCCTCTGGTCCT-----TCT--------------------CACCCCAAGTGGAGGCTGGAGCAGGAGCAGGGGTGGGAAGGGGTTCCCTCCTTGGCTGGGCCTTCATGGGAGGGGAACTTTGACCTTTGTACCCAAGAAGAGGCCAAGCCCCAAGCC-AGCGGGCCATGGG--------GAGTAAAGACCCCC-AGGCCTCCTGAGGGCCTCCTGGAGGAAGTGCTCCTGACCTCGTCTGGGGGCAGAGGAAGGGGGAGGTTGAGGGTC--GGAATCCATCTCGGCGCTGGGCCAGGAAGCGCTCAGCGACT-GCACCGGTTCCCA-TGGGCAGAGATGTGGGCCCGCCCTGGTTACAGCCCCCACTG a score=7005.0 s hg17.chr17_random 1848485 53 + 2618010 GCCCCTGCGCTGATCAGAGCCACAGAAAGTGGGCCACTTTGGGGACCCCC--------------------TAG s panTro1.chr19 81249060 53 + 82489036 GCCCCTGCGCTGATCAGAGCCACAGAAAGTGGGCCACTTTGGGGACCCCC--------------------TAG s canFam1.chr18 30427337 71 + 66173745 -ACCCAATG-TGACCAAAGTCACGGGCAGTGGGCAGCTACGGGGACACCCCGTGTGGCTGGAGCTAAGGACAG a score=1151.0 s hg17.chr17_random 1848538 10 + 2618010 TCCCCCTAGT s panTro1.chr19 81249113 10 + 82489036 TCCCCCTAGT s canFam1.chr18 30427408 10 + 66173745 CCGGCGCAGG s galGal2.chr3_random 685551 10 + 1636275 TTTCCTTGGT a score=1314.0 s hg17.chr17_random 1848548 43 + 2618010 GACAAGAGAAGAGAAGNGTGGTGGCAGGATGGT--GGTCAGGCAG---------- s panTro1.chr19 81249123 42 + 82489036 GACGAGAGAAGAGAAGA-TGGTGGCAGGATGGT--GGTCAGGCAG---------- s mm5.chr11 120311269 42 + 121648857 GAGGAAAGGAAAGGAAAGTAGGGAACAGGAGGA--AGGCTGGCA----------- s canFam1.chr18 30427421 43 + 66173745 TCCAAGCCCGGGGAGGGGGGGCGGACAGAAGGT--GGGGAGCCAG---------- s galGal2.chr3_random 685561 55 + 1636275 CAAAAAAGAAAAGACATGGAGGAAACTGATGGTCAGTGCAGCCAAAGTACAGCAG a score=52785.0 s hg17.chr17_random 1848591 98 + 2618010 -------GACGTGTCA---ATCCTTGCCCGCTGGGGCCAGGCTGCGGGGGAGCAGCTTGGTGTNGGNCCAGAAGGTGACAGAGCGGTCCCTGCAGGGGAGTCCAGCTT s panTro1.chr19 81249165 96 + 82489036 -------GACGTGTCA---ATCCTTGCCCGCTGGGGCCAGGCTGCGGGGGAGCAGCTTGGTGTGG--CCAGAAGGTGACAGAGCGGTCCCTGCAGGGGAGTCCAGCTT s mm5.chr11 120311311 93 + 121648857 -------GACAAATCA---TTCCTTGCCTGCTGGGACCAGGTTTCAGGGCAGTGGCTTGACATGG--TCAGAA---GACAGAGAGGCCCCAGCAGAGGAGTCCAGCTT s rn3.chr10 110046542 93 + 110733352 -------GACAAGTCA---TTCCTTGTCAGCTGGGACCAGATTTCAGGACATCGGCTTAACATGG--CCAGAA---GACAGAGAGACCCCAGCAGAGGAGTCTAGCTT s canFam1.chr18 30427476 99 + 66173745 -------GACACCTCAGTTCTCCTTGCCTGCTGGGGCCAGGCTCTGCGGGAACAGCTTGGAGTGG--CCAGAAGGGGCCAGTGAGTGCCCTGGAGAGGACTCCAGCTT s galGal2.chr3_random 685616 100 + 1636275 CACAGCAGTCTGCTCAGTTCTTCTTG-CTGCTGGGGTTC--TTACTGTTGAACAGACTGACTTTG--CTGGCAGATGCCACAGA---CAGAGAAGGAGACTCCAGCTT a score=122779.0 s hg17.chr17_random 1848689 75 + 2618010 CACCTTGTCCAGGATGGTCTTCTTGATGGCGGCTGGTGACACCTGCTCCTGGTCAGCCATGGACTGCAGCT-----CCCT s panTro1.chr19 81249261 75 + 82489036 CACCTTGTCCAGGATGGTCTTCTTGATGGCGGCTGGTGACACCTGCTCCTGGTCAGCCATGGACTGCAGCT-----CCCT s mm5.chr11 120311404 75 + 121648857 CACCTTATCCAGTACAGTCTTCTTTATGGCAGCAGGAGAGATGGTCTCCTGGTCAGCCATGGTCTGCAGCT-----CCCT s rn3.chr10 110046635 75 + 110733352 CACCTTGTCCAGTACAGTCTTCTTTATGGCAGCAGGGGAGACGGTTTCCTGATCAGCCATGGTCTGCAGCT-----CCCT s canFam1.chr18 30427575 75 + 66173745 CACCTTGTCCAAGATGGTCTTCTTGATGGAGGCTGGTGAGACTTTCTCCTGGTCAGCCATGGACTGCAGCT-----CCCT s galGal2.chr3_random 685716 80 + 1636275 CACCTTATCCAACAGAGTCTTCTTTATGGCTGCTGGGGAGATCTTCTCCTTGTCTGCTAAATGCTGCAGCTGCCTGCCAT s fr1.chrUn 257729465 75 - 349519338 CACTTTGTCCAGAGTCGTCTTCTTAATGGCCTCTGGGGAGATTTTCTCTTGATCAGCCAAAGCCTGAAGTT-----CTCT s danRer1.chrUn 244527610 75 - 367113659 CACTTTGTCCAGAGTCGTCTTCTTGATGGCAGCGGGAGAGATCTTCTCTTGATCTGCCAAATACTGAAGCT-----CCCT a score=3140.0 s hg17.chr17_random 1848764 17 + 2618010 AGAGAGGCANGGGAG--AG-- s panTro1.chr19 81249336 16 + 82489036 AGAGAGGCA-GGGAG--AG-- s mm5.chr11 120311479 16 + 121648857 AGAAAAGCA-ATGAG--AC-- s rn3.chr10 110046710 16 + 110733352 AGAAAAGCA-AGGAG--AC-- s canFam1.chr18 30427650 18 + 66173745 GGGGGGGCA-GTGAGGAGT-- s galGal2.chr3_random 685796 17 + 1636275 AGGGTGGTAGAAGAG--AG-- s danRer1.chrUn 244527696 17 - 367113659 -AAAAAGAA-AAGAA--AGAG a score=-2750.0 s hg17.chr17_random 1848781 12 + 2618010 GTTGGCTTTG------------------GA- s panTro1.chr19 81249352 12 + 82489036 GTTGGCTTTG------------------GA- s mm5.chr11 120311495 11 + 121648857 CCTGACTCT-------------------GA- s rn3.chr10 110046726 11 + 110733352 ACTGAGTCT-------------------GA- s canFam1.chr18 30427668 30 + 66173745 GCTGGCTCCAGGCCTCTGCCTCCCTCCTGA- s danRer1.chrUn 244527713 12 - 367113659 AGTGAGCTT-------------------GAA a score=33691.0 s hg17.chr17_random 1848793 310 + 2618010 GCACAAGCGTGCACCCAGGAAGAGGGAGTGAAGCCCANCAGCTCC--CAGTGCCAGTCAGCCCTGG--------GCGATGCTGTCACCCTCACCTCAGCACCTTTATTCCCCTCTGCCAGCGACACGCC-----------------CCCACACAGCTGCTGGGCTCCTTCTCACCTCATTCGAATCAGCTCAGCATCACCAAATCTCCCCGCAGTGCCC---CCCAGACCTGAGTTCTCGTGGCCCCACCACGGGATGTGGGTTTACACCTGTCTCCCCTGCAGGCTGG----AGGTGAG--GCCAGGCCCCTNCGTGTTCCCCTCACTGTTACAGGGTGGCACTC s panTro1.chr19 81249364 308 + 82489036 GCACAAGCGTGCACCCAGGAAGAGGGAGTGAAGCCCA-CAGCTCC--CAGTGCCACTCAGCCCTGG--------GCGATGCTGTCACCCTCACCTCAGCACCTTTATTCCCCTCTGCCAGCGACACGCC-----------------CCCACACAGCTGCTGGGCATCTTCTCACCTCATTCGAATCAGCTCAGCATCACCAAATCTCCCCGCAGTGCCC---CCCAGACCTGAGTTCTCGTGGCCCCACCACGGGATGTGGGTTTACACCTGTCTCCCCCGCAGGCTGG----AGGTGAG--GCCAGGCCCCT-CGGGTTCCCCTCACTGTTACAGGGTGGCACTC s mm5.chr11 120311506 241 + 121648857 GCCCCTCCGC-CTCCCAG-------------AACCCA-CAGTTCCAGCAG-------CAGCTTTGGTGGGGAGTGCTATGCTGGCACCCACAA--------------TCCCTTCTGCCAGCCCCGCCCCATCCTGCCCCTTCCCCACCTATACAGCTGCAAGGCCACTTCTCACACCACTCAGGTGTAGTCAGGGTCACCC---------------------------------------TGGCTACAACTTGTGGCAGGAGTCTGCTTCTGTTTTCTTTATGGGC-----------------CTAGGTACCT---AGATCCCATA-----TCCAAG-----CCTC s rn3.chr10 110046737 242 + 110733352 GCTCTTCTAC-CTCCCAG-------------AACCCA-CAGTTCCAGTAG-------CAGCTTTGG-GGGGAAGTCAATGCTGGCACCTACAA--------------CCCCCTCTGCCAGCCACACTCT---CCCCCCATACCCCACCTGTACAGCTGCACAGCCACTTCTCACACCACTCAG----GGTCAGGGTCACCC---------------------------------------TGGCTACAACTTGTGGCAGGATTCTGCTTCTGTTTTCTCTATGGGC-----------------CTAGGCGGCCCCATG----CCCAAGCTTCACAGACTTGCACTC s canFam1.chr18 30427698 283 + 66173745 GCCCAAGGGTCCACCAGGGCAGAGGGGG----------CACCTGC------------CCACCTGGG------TTGCTGTGCTGTCACTCCCGTCTCAT---------GTCCTCCTGCCAGCCACTCCTC---C-------------CCCAGACAGCCATCTGCCTTCCTCTCCCCTCGTTCAGATCAGCTC-GGGTCACCGAACCTACTAGCAGCCCCCCGGCCCAGAACCCA-------TCACCACCCCACTGGGCCCTGGGCCGTATCTGCAGGCCCTGAGGATTGGCGCCAGGAGGGCAGCACGGCATCC--GAGGCAGCCTTGCCGTCACATTGTGGCACTT a score=6390.0 s hg17.chr17_random 1849103 56 + 2618010 GCAGAGTCTGAGGGTGTCTGGACTGGAGAGTGGGCAGTGTGGCGAGAAAGACGTCC s panTro1.chr19 81249672 56 + 82489036 GCAGAGTCTGAGGGTGTCTGGACTGGAGAGTGGGCAGTGTGGCAAGAAAGACGTCC s mm5.chr11 120311747 48 + 121648857 ACAGACT-TGCATGTGTC----CTAGTGGGTGGCCA--CTGGTAAGAAAGGC-TGG s canFam1.chr18 30427981 54 + 66173745 GGAGAAGTTCTGGGTTTC--AACTGGGGGGCAGGCAGGGAGGTGACAGTGCCGCCT a score=0.0 s hg17.chr17_random 1849159 2 + 2618010 TC a score=137.0 s hg17.chr17_random 1849159 2 + 2618010 TC s panTro1.chr19 81249728 2 + 82489036 TC s mm5.chr11 120311795 2 + 121648857 TA s rn3.chr10 110047321 2 + 110733352 TG a score=40140.0 s hg17.chr17_random 1849161 549 + 2618010 ACCCACCCTGCAGACCTGAACTGGGGACAGCggctcccagcc-tggctctgcctttgaccagctgtgggatcccaggcaaACAGC-AAACTCTGTCTTTCTCTTGCTCTTTGCTTCTTTCACCTTCCATGNGAATTTTCCTTNGTGCCTGGATGTTGCTGCGTGTCCTACNTGGT-------CTAACT--TAATCCCA----CAGCGAGGGCAGGAGGAAGGTG--------GGCCCCCACAGAAGTTTCCTAATGTGGCTG-------GCCACCCCGCCACCCCACTGGTGTGGCC--CCTGGCTCAAATGACACTCCTAGCTATGACAATGGTGAACCTATGTGGGGAGCACAGGGCA-----CAGCATCCGGGTCCCTCTATGGAT--------GTTCCCTCCTCGCAGGA-AACGGAAGGTGGGGAGGGGCACTGCCCACAGTAACCCAGGGAACCTCGGGGCCCCCNTGTGTCCTGCGCAACACTGGGCTGGAGCTCAATACGTATCTGCTGAGTGCGTGA-ATGAGCAGATGTGTGTG--AGAGAGGCCTCTGCCATGCAAGGACTGGAGAC-----CAGGGAAGCGGGCAGCGCG---G s panTro1.chr19 81249730 532 + 82489036 ACCCACCCTGCAGACCTGAACTGGGGACAGCGGCTCCCAGCC-TGGCTCTGCCTTTGACCAGCTGTGGGATCCCAGGCAAACAGC-AAACTCTGTCTTTCTCTTGCTCTTTGCTTCTTTCACCTTCCGTG-GAATTTTCCTT-GTGCCTGGATGTTGCTG----TCCTAC-TGGT-------CTAACT--TTATCCCA----CAGCGAGGGTGGGAGGAAGGTG--------GGCCCC-ACAGAAGTTTCCTAATGTGCCTG-------GCCACCCC--------ACTGGTGTGGCC--CCTGGCTCGAATGACACTCCTAGCTATGACAACGGTGGACCTATGTGGGGAGCACAGGGCA-----CAGCATCCGGGTCCCTCTATGGAT--------GTTCCCTCCTCGCGGGA-AACGGAAGGTGGGGAGGGGCACTGCCCACAGTAACCCAGGGAACCTCAGGGCCCCCC-GTGTCCTGCGCAACACTGGGCTGGAGCTCAATACGTATCTGCTGAGTGCGTGA-ATGAGCAGATGTGTGTG--AGAGAGGCCTCTGCCATGCAAGGACTGGAGAC-----CAGGGAAGCGGGCAGGGCG---G s mm5.chr11 120311797 465 + 121648857 GTTTACCCTGTAGACATGAACCTAGGACTGTGATTTCCAGCCTTGGCTCTGCTTTACACTAACAGAGGGA-CCTGGACA---------------TGTTTCACTCACTC----------TCACC--------AGACTATCTTG-CTGCTCACAAGCTGTCA----GCTTAGCTAATTTGTCAGCTAATTTGTTAAACCT----GGGAAAGGTCATGAAGAAGGT--------------------------------------------------------------GCTAGGCCAGGG--CCTGGTTC----------CCTGGCTATG---ATGATGAAAC-------GGAATAAAGGCTATATTGCAGGACCAGAGGAGGTCTGTGGACACATGTAGATACATTTCTCACAGGACAATGAAAAAGAGCTAGAGATACTGCATACTGTGACCCA-GAAACGTTGAACCGTCCA-CAGTCCTGCCCAGGGCCAAGACAGGGCTCAGTG-GTACCTGCTAAGTGATTCA-CTGCCATGAAGCCTTTG-AAGCCACGACTCTGGCGT------ACCGGAGCCTCACTCTGAGAGGTGGGTGGCAAG---A s rn3.chr10 110047323 467 + 110733352 GTTTACTCCATAGACATGAA---AAGACAGTGATTTCCAACCTTGGGTCTGCTTTACAACAACGAAGGGACCCTGGACA---------------TGTTTTAT----------------TCACC--------AGGCTGTCTTG-CTGCTAACAACCTGTCA----GCTTAG------------CTAATTTGTTTAACCT----GGGAAAGGCCATGAAGAAGGTGCTGGGCCAGGCCCC-----------CATAAACTGCCCA-------GTCACCCT--------TCTAG----------CTGGCTC----------TCTGGCTATG---ATGTTGAAAC-------TGAATGAGGGCTGTATTGTGGGACCAGAAGGGGTCTATGGACACATGTAGATACACTTCTCACAGGACAATGAAAAAGAGCTAGAGACTTTGCATGTTGTGACCCA-GAAACCTTGG---------GTTTCCTGCCGAGGGCCAGGACAGGGTTCAGTT-GTATCTGCTAAGTTAATTACCTGCCCTGAAGCCTTCGTAAGCCAGGACTCTGCCGTACAGG-CCTGGGTGG-----CTGAGAAATGAATGACAGT---A s canFam1.chr18 30428035 433 + 66173745 GTCCATCTTGCGGACCTGAGCCGGGCACCACGGCTCCAAGCC------------------------AAGCCACCAAGCT--CTGCTGTCCCCCCTCTTGGATTTTCTTTCTGCTG---TCACCCAGCTGG-GGACA-------CTG--AGCATCTGGCCA----GCTGAC------------TTGCTTCATCTCCCCAGGACCGGGGAGGGGGTGAGGAGGGTG--------GGGCCCACCTGGGGTTCCCTCTTGTACCTGCTGGCCTGCCTCCCCG-------GCTTGGGTGACCAGCCTGGTCT----------GCGGGCTACA--GCTGGGGAAACTATGGGGGGAGCACAGCGTG-----------------AGCCCAGAGGGC--------AGCCGTCCCCCCAGGGGCCATGGC---TGCTGAAGGGTGCTGCCAGCTGTGACCCC---------AGGGCACCAC-------------------TGCCAGGCTTCGATAAACGTCTGTTGGGTGAATGG-CTG----------------AGCAAAATCT-------------GCAGGGGCT-----CTGGGGAGCGAGGCGCGCGGCTG a score=4218.0 s hg17.chr17_random 1849710 8 + 2618010 GGGCCCAN s panTro1.chr19 81250262 7 + 82489036 GGGCCCA- s mm5.chr11 120312262 7 + 121648857 GAACCTA- s rn3.chr10 110047790 7 + 110733352 GAACCTA- s canFam1.chr18 30428468 7 + 66173745 GGGCCCA- s galGal2.chr3_random 685872 7 + 1636275 GTGCCCA- a score=62437.0 s hg17.chr17_random 1849718 33 + 2618010 CCGTGTGCGGATGCAGGAGGCCTCCACAGCGTT s panTro1.chr19 81250269 33 + 82489036 CCGTGTGCGGATGCAGGAGGCCTCCACGGCGTT s mm5.chr11 120312269 33 + 121648857 CCGTGTACGGATGCAGGAGGCTTCCACAGCGTT s rn3.chr10 110047797 33 + 110733352 CCGTGTGCGGATACAGGAGGCTTCCACAGCATT s canFam1.chr18 30428475 33 + 66173745 CCGTGTGCGGATGCAGGAGGCCTCCACGGCGTT s galGal2.chr3_random 685879 33 + 1636275 CCTTGTTCGGATACAGGAAGCCTCCACAGCATT s fr1.chrUn 257729813 33 - 349519338 CCTGGTGCGAACGCAAGAGGCCTCCACCGCTTG s danRer1.chrUn 244529801 33 - 367113659 CCTGGTTCTAATGCACGAAGCCTCCACAGCATT a score=155816.0 s hg17.chr17_random 1849751 155 + 2618010 GATGAGCAGGGAGCGGAAGC------------CCCCACTNCTCCAGCACATGCAAGGCAT-GGATGGTGGCCCCACCAGGAGAGCTGACGTTGT--CCTTGAGCTGGCCTGGGTGCTGTTCTGAGTGCAGCAGCATCTTGGCAGCCC----------------CC-TGCAGCCAGAA---GAAAGGCTGA s panTro1.chr19 81250302 154 + 82489036 GATGAGCAGGGAGCGGAAGC------------CCCCACT-CTCCAGCACGTGCAAGGCAT-GGATGGTGGCCCCACCAGGAGAGCTGACGTTGT--CCTTGAGCTGGCCTGGGTGCTGTTCTGAGTGCAGCAGCATCTTGGCAGCCC----------------CC-TGCAGCCAGAA---GAAAGGCTGA s mm5.chr11 120312302 157 + 121648857 GATAAGCAAGGAGCGAAAGC------------CCCCGCT-CTCCAGCACATGCAAGGCAT-GGATGGTGGCCCCACCCGGAGAGCAGACATTAT--CCTTGAGCTGGCTGGGATGCTGTTCTGAGTCTAGTAGCATCTTGGCTGCCC----------------CC-TGTGACAAGAAACGGGCCGGCTGG s rn3.chr10 110047830 155 + 110733352 GATAAGCAGGGAACGAAAGC------------CCCCACT-CTCCAGCACATGCAAGGCAT-GGATGGTGGCCCCACCAGGAGAGCAGACATTGT--CCTTGAGCTGGCCCGGATGTTGTTCTGAATCTAGTAGCATCTTGGCTGCCC----------------CC-TATGATAAGAAA--GAGGAACTGA s canFam1.chr18 30428508 155 + 66173745 GATGAGCAGGGAACGGAAGC------------CGCCGCT-CTCCAGGACGTGCAGGGCGT-GGATGGTGGCCCCGCCGGGGGAGCACACGTTAT--CCCTGAGCTGCCCGGGATGCTTCTCCGAGTCCAGTAGCATCTTGGAGGCCC----------------CC-TACAGCCAGAGA--GAGCAGCTGG s galGal2.chr18 4055203 180 - 8919268 GAGGAGGAGGAGGCGGTGGCCGTGCGCCGGAACCCCGCC-CTGC-GCGAGGGAGGGGCGTAGGGGAGCGGCGGCGCCGGGGGTGGTTCCGCTGCAGCGGTGCGCGGTGATGGGCGCTTTTCTT--CACTGCAACGCCGCGGCTGTGCTGCGTTCCCGGGCGGTCC-TGCGGGCTGC----GAACTGCTG- s fr1.chrUn 257729846 150 - 349519338 GATCAGGAGGCTACGGAAGC------------CTCCGCT-CTCCATGATGTGCAGGGCGT-GGATGGTAGCGCCACCTGGGGAACACACGTGGT--CCTTCAGTTGCCCGGGGTGTTCGTCCGAGTCCAGGAGCATTCGAGCAGCAC----------------CC-TTTAA--AGAA---GAGGAAAT-- s danRer1.chrUn 244529834 155 - 367113659 GATCAGGAGGCTGCGGAAAC------------CGCCACT-TTCCATCACATGCAAAGCGT-GGATTGTAGCACCTCCAGGCGAAGCCACGTTGT--CCTTTAACTGTCCAGGGTGTTGCTCAGAATCAAGGAGCATTTTTGCCGCTC----------------CCTTGCAAAAAAAAACAAAACAAA--- a score=-19448.0 s hg17.chr17_random 1849906 49 + 2618010 CGGCTGTGGGCACGCACCTGCCT----CTGCGGGGCACTG-CCCCAGCCAC-----TGT s panTro1.chr19 81250456 49 + 82489036 CGGCTGTGGGCACGCACCTGCCT----CTGCGGGGCACTG-CCCCAGCCAC-----TGT s mm5.chr11 120312459 18 + 121648857 TGGCAGTAAG---GAACCTAC-------------------------------------- s rn3.chr10 110047985 51 + 110733352 TGGCTGTAGG---GCACCTAGCCATCACTAGAGAATATAGTCCTCAGCCAC-----CCA s canFam1.chr18 30428663 56 + 66173745 CTGCCACGGG--AGCGCCTGTCCGGC-CCACAGGCCTCTGCCCCCAGCCCCGGGCACCG s galGal2.chr18 4055383 39 - 8919268 CTGCCATACGGGCGGTGCTGCCG----CTGAGCAGCACAG----------------CAC s fr1.chrUn 257729996 13 - 349519338 ---------------------------CGGGAAATCA-------------------CCA a score=112519.0 s hg17.chr17_random 1849955 210 + 2618010 AGCACACACTGACGCCCCACTTGGCTCCTC------CCA-GTGAAGCCCCAGGGCCCCGCA-------AAGAGTGGC-CCCACCAGAGGGTCAGGAAACACACTGACCAGGAGGGCCTGGGCCCCGAGGCGGACTGCCAGGCGCCTTGGAAGTCCCATCT---TCACACCCCCATCAGCCAGGGCATCCAGG-------GCTGTGAATG-------------CCTGTG----GGGAGAAGGCA-----CCCTGAGCC s panTro1.chr19 81250505 210 + 82489036 AGCACACACTGACACCCCACTTGGCTCCTC------CCA-GTGAAGCCCCAGGGCCCCGCA-------AAGAGTGGC-CCCACCAGAGGGTCAGGAAACACACTGACCAGGAGGGCCTGGGCCCCGAGGCGGACTGCCAGGCGCCTTGGAAGTCCCATCT---TCACGCCCCCATCAGCCAGGGCATCCAGG-------GCTGTGAATG-------------CCTGTG----GGGAGAAGGCA-----CCCTGAGCC s mm5.chr11 120312477 202 + 121648857 --CACTTACTGACTCCCCTCTCAGGTGTCC------CCA-GT-------TTGGGTTTAGCT-------AGGAACAGCTCCCACCAGCATCTC----AAAGCACTGACCAGGAGGGCCTGGGCCCCGAGGCGGACTGCCAGGCGTCTGGGAAGCCCCATTT---TCACACCACCGTCAGCCAGAGCATCCAGG-------GCTGTGAAAG-------------CCTGCGTGCAGGGAGATTGCA-----TCCTCAGCC s rn3.chr10 110048036 200 + 110733352 AACACCTGCTGACTCCCCTCTCAAGTATCC------CCA-GT-------TTGGGTTTAGCA-------AGGAACAGCTCCCACCAGCATCTC----AAAGCACTGACCAGGAGGGCCTGGGCCCCAAGGCGGACTGCCAGACGTCTTGGAAGCCCCATTT---TCACACCACCATCAGCCAGAGCATCCAGG-------GCTGTGAAAG-------------CCTGTG----GGGAGATTGCA-----TCCTCAGCC s canFam1.chr18 30428719 211 + 66173745 TGCACCCACTGACTCTCCACCCACCTGCCC------CCATGCAACAGCATCAGGCCCAGCC-------AGGAGGAGCCCCCACCAAAGGATCGGGAAGAACACTGACCAGCAGAGCCTGGGCCCCGAGGCGGACTGCCAGGCGCCTGGGAAGCCCCATCT---TCACGCCCCCGTCAGCCAGGGCCTCCAGG-------GCTGTGAATG-------------CCTGCA----GGGAGAGGACA------ACTAAGGC s galGal2.chr18 4055422 223 - 8919268 AGAGCACAGCAACACAGCACACAGCTGTGCTGGGCGTCA-GCTCAGCTGTAGAACCCGACATCTGCTGGACTGCGGC-GTAACAAGAA--TGAGGAAAAGCGGTG-----------TTGGTTTCCATGGCGTTCTG--------GTTGGAA--CCCATTTACAACACGCTCTCCCGAGCAGGTGGCTGCGGGCGATGCCGCTGTGCGTGAAGCACCGCCCCTCCTGCG----GCTCGCGGCCA-----TCCGGAGCC s fr1.chrUn 257730009 143 - 349519338 AGAACAC---------------------TT------TTA-----------AAAACCTATCA-------AAATGAAT--------------------AATGCAGT-ACCAGTAGGGCTTGGGCACCAAGGCGTATCGCCAGTCTTCTCGGCAGGCCCATTT---TCACGCCACCGTCGGCTAGAGCGTCTATG-------GTCGTAAACG-------------CCTGCA----GCGA--------------------- s danRer1.chrUn 244530012 180 - 367113659 AGCGCAGATGA---------TCAGATTTTC------ATT-GC----------------GAA-------AAAGGATTCAGACACTAT----------GAGAGACTAACAAGCAGGGCCTGAGCTCCCAGTCGTACAGCCAGTCTTCTGGGCAATCCCATCT---TCACCCCTCCATCAGCAAGAGCATCAACC-------GCTGTGAATG-------------CCTAAG----ATTAGGATAAAAGTAGTCTTAAGC- a score=-26141.0 s hg17.chr17_random 1850165 146 + 2618010 TCTCTCCTGGGCTTCTCCTCCTTCCCTTCTGGGCAAGCTCCAGTTCCCACAGCCTTGGAGCCCTCCACCCTGGCCCTCCCAGGGGGAGCAGGGACAGATGTGC--CCGGTGGTCCCGGGAAGTGCC--CGCCGCCGCCAGCTTCCCCCG---------C s panTro1.chr19 81250715 146 + 82489036 TCTCTCCTGGGCTTCTCCTCCTTCCCTTCTGGGCAAGCTCCAGTTCCCACAGCCTTGGAGCCCTCCACCCTGGCCCTCCAAGGGGGAGCAGGGACAGATGTGC--CCGGTGGTCCCGGGAAGTGCC--CGCCGCCGCCGGCTTCCCCCG---------C s mm5.chr11 120312679 90 + 121648857 TCCTCTCTGGGA---------------------------------CCCAGAG--------------------------CAGGGTGCAGCAGAGACAGAGGCAC--ACAGAGCCCCTGGGAACTGCC--CACAGCCCCGACCACCCATCG-----CTC-C s rn3.chr10 110048236 74 + 110733352 TCCTCTCTAGGA---------------------------------CCGAGAG--------------------------CAGGGTGCAGCAGA------------------GGTCCTGGGAACTGCC--CACATCCCTGACCGCCCATCG-----CTC-C s canFam1.chr18 30428930 149 + 66173745 CCCACCCTGGGCCCTTCCTCCTCCTCCTTCTGGCACCGGCGGGT-CCAGCAGCTCTGCCCACAGCAGCCAGAG-----CAGGGAGGAG-GGCGGAGGATGTGC--CCGGAGGCCCTGGAACCATCCATCACCACCACCACCACCCGCCGCCCATCCC-C s galGal2.chr18 4055645 135 - 8919268 CTCC-----GGCTGCTCCACGTCTCCATGCAGGCCGAGTTTCTTCCCCAACG----AGTCCGTTTTACAATAAGCAGCCAAACAAACGACCCGACAGAACCGCAGCCGCTCCTCCCGG----------CAGCGCTGACGCCCCCCCCCG-----CCCGC s fr1.chrUn 257730152 60 - 349519338 ----------------------------------------CAGCACAAACACAGTTGTT-------------------AAGACGGCAGCAG--------------ACTGAGCTTCTGA----------C-------TGGACATCCTCTA---------A a score=76058.0 s hg17.chr17_random 1850311 50 + 2618010 AGTCCTTACGTAGGCGGGGCCGCTGC-------CACTGAGCCCCGTGACGGCATCAA s panTro1.chr19 81250861 50 + 82489036 AGTCCTTACGTAGGCGGGGCCGCTGC-------CACTGAGCCCCGTGACGGCATCAA s mm5.chr11 120312769 50 + 121648857 AGTGCTCACATAGGCAGGGCCGCTGC-------CACTGAGCCCTGTGACAGCATCGA s rn3.chr10 110048310 50 + 110733352 AGTGCTCACATAGGCAGGGCCGCTGC-------CACTGAGCCCCGTGACGGCATCGA s canFam1.chr18 30429079 50 + 66173745 AGGCCTCACATAGGCTGGGCCGCTGC-------CACTGAGCCCCGTGACGGCATCAA s galGal2.chr18 4055780 57 - 8919268 GCTGCTTTTGTTCTCCGTCCCGGCGCTCCATCGCACAGCACCGCGTATCGGCACGAG s fr1.chrUn 257730212 50 - 349519338 AATACTCACATAAGCCGGGCCGCTGC-------CGCTGAGGCCGGTGACGGCGTCAA s danRer1.chrUn 244530348 50 - 367113659 GTTGCTTACATAGGCTGGTCCACTGC-------CACTGAGGCCAGTGACGGCATCAA a score=187534.0 s hg17.chr17_random 1850361 103 + 2618010 TCAGNGTCCTCTTCCACCTCCGTGCAGAAGCCCACGCTGCTCAGCAGCTGCTCCATGAGCCTCCCGTCCTCCACCTGGGCGTGCGTGCCTGTGGCATACACNG s panTro1.chr19 81250911 101 + 82489036 TCAG-GTCCTCTTCCACCTCCGTGCAGAAGCCCACGCTGCTCAGCAGCTGCTCCATGAGCCTCCCGTCCTCCACCTGGGCGTGCGTGCCTGTGGCATACAC-G s mm5.chr11 120312819 101 + 121648857 TCAG-ATCTTCCTCCACCTCTGTGCAGAAGCCCACGCTGCCCATGAGCTGCTCCACAAGCCTGCCATCTTCCACCTGAGCGTGAGTACCTGTGGCATACAC-A s rn3.chr10 110048360 101 + 110733352 TCAG-ATCTTCTTCCACCTCTGTGCAGAAGCCCACGCTGCCCATGAGCTGCTCCACAAGCTTGCCATCTTCCACCTGAGCGTGAGTACCCGTGGCGTACAC-A s canFam1.chr18 30429129 101 + 66173745 TCAG-GTCCTCCTCCACCTCCGTGCAGAAGCCCACGCTACCCATGAGCTGCTCCAGGAGCCTGCCGTCCTCCACCTGGGCGTGGGTGCCCGTGGCGTACAC-G s galGal2.chr3_random 687064 101 + 1636275 TCAG-GTCCTCTTCCACCTCCGTGCAGAAGCCTACGCTGGCCATCAGTTGCTCCAAGAGCTTCCCATCCTCCACGTCTGCGTGAGTCCCGGTAGCATAGAC-T s fr1.chrUn 257730262 101 - 349519338 TCAA-GTCCTCCTCCACCTCGGTACAGTATCCTACACTGGACATCAGCTGCTCCAGGAGCTTTCCATCCTCCAGGTTTGCGTGCGTGCCTGTGGCGTACAC-C s danRer1.chrUn 244530398 101 - 367113659 TCAG-GTCCTCTTCCACCTCGGTGCAGTAGCCCACACTGGCCATTAGCTGCTCCAAGAGCTTCCCGTCCTCCACCTCCGCATGGGTGCCTGTGGCGTAAAC-C a score=100.0 s hg17.chr17_random 1850464 1 + 2618010 G s danRer1.chrUn 244530499 1 - 367113659 G a score=1500.0 s hg17.chr17_random 1850464 1 + 2618010 G s panTro1.chr19 81251012 1 + 82489036 G s mm5.chr11 120312920 1 + 121648857 G s rn3.chr10 110048461 1 + 110733352 G s canFam1.chr18 30429230 1 + 66173745 G s galGal2.chr3_random 687165 1 + 1636275 G a score=0.0 s hg17.chr17_random 1850464 1 + 2618010 G a score=80850.0 s hg17.chr17_random 1850465 86 + 2618010 TGGCCCCCTCCCGCA------------CCACGACTGGAGTGTTGGTCATGCAGCGGATGACCCTGGGGNGCTGGCCGAAACGCTGACAG--CTTCT------GGA-A s panTro1.chr19 81251013 85 + 82489036 TGGCCCCCTCCCGCA------------CCACGACTGGAGTGTTGGTCATGCAGCGGATGACCCTGGGG-GCTGGCCGAAACGCTGACAG--CTTCT------GGA-A s mm5.chr11 120312921 91 + 121648857 TGACCCCCTCCCGTA------------CCACGACCGGGGTGTTAGTCATACATCGGATGACTTTGGGG-GCAGGTTGGAACGCTGTCAG--CTTCTGGAAGAGGA-A s rn3.chr10 110048462 90 + 110733352 TAACCCCCTCCCGTA------------CCACGACCGGGGTGTTAGTCATGCATCGGATGACTTTGGGA-GCAGGTTGGAACGCTGTCAG--TTTCTGGAAG-AGA-A s canFam1.chr18 30429231 85 + 66173745 TGGCCCCCTCCCGCA------------CCACGACCGGCGTATTAGTCATGCAGCGGATGACTTTGGGG-GCTGGCTGGAACGCCATCAG--CTTCT------GGA-G s galGal2.chr18 4055928 99 - 8919268 TAACCCTTTATTTCACTTAAGAAACCTCCACAGCTGCCCCATCGGCTCCAAAACATCT-CCTGCAGAC-ACTGAGCACAAAGCCTGCAGAAATTCA------GGAGA s fr1.chrUn 257730364 85 - 349519338 TGGCGCCCTCACGCA------------CCTCCACGGAGATGCACGTCATGCACCGCAAGACTTTTGGA-TTCTCCCGGTACTGCTGCAG--CTTCT------GCA-G s danRer1.chrUn 244530500 85 - 367113659 TGGCCCCCTCGCGGA------------CCACCACCGGGGTGTTTGTCATGCAGCGAATGACTTTAGGT-GCTGAACGGTACTGCAGCAG--TTTCT------GCA-A a score=-49859.0 s hg17.chr17_random 1850551 172 + 2618010 GAGAAACCAGC-----------------------GTGTC--CGTCTGGCC-----------ATGG-ACGCAGTGCCTAGATG------CACTCANCCCCACC---------AAGCA----GTGCCCGAGCTCTCCCAGTGGGCCGGGACGCTGCAACCC-TTTTGCAG--ATGAAAACTG------AAGTACTG-----AGGGCCCGGGC----TCTAGACAG-------------CCCCTCTCCA-----CACCCCACTGGGC s panTro1.chr19 81251098 171 + 82489036 GAGAAACCAGT-----------------------GTGTC--CGTCTGGCC-----------GTGG-ACGCAGTGCCTAGATG------CACTCA-CCCCACC---------AAGCA----GTGCCCGAGCTCTCCCAGTGGGCCAGGACGCTGCAAGCC-TTTTGCAG--ATGAAAGCTG------AAGTACTG-----AGGGCCCGGGC----TCTAGACAG-------------CCCCTCTCCA-----CACCCCACTGGGC s mm5.chr11 120313012 218 + 121648857 GAGAAACCAGCTCTATCATTCCTGTGGTGGGTG-GTAGC--CGTTTGTCCTCATCCCAGGTATGG-AAGT-GAGCATGGATG------TGCTTC-CCCTATG---------GAGCA----CTTCCTGAGTTCTTGCTGCAGGCTGGGCTGCTACACCCT-GTGCACAGGTACAGAAGCCGGACACCAAGAGCAG-----AGATCCTGACCACATGCTGCACAC-------------CCCCTCTGCAG--CGCTATTTATCTGGC s rn3.chr10 110048552 180 + 110733352 GAGAAACCAGC--------------------------TC--TATCGCTCC----------AATGG-----------TGGCTG------TCCTCA-TCCCAGGCATGGGAGTGAGCA----TGTCCTGAGTTCTTGCTGTAGGCTGGGCTGCTACACCCTGGTGCACGGGTAGAGAAGCCGGACGTCAAGAGCAG-----AGCTCCTGACCACATGCTG--CAC-------------CCCCTTCGCA----GCACTAAAGGTGGG s canFam1.chr18 30429316 196 + 66173745 GAGAAACCAGC--------------------TGTGTGTC--TGTCCTGCCCCTTGCCCGGCGCAGCGTGCCGGGCGTGAGGGTGCCCCCACTCA-CCCAGCT---------AAGCG----TTTCCTGACTTCCAGCTACGGGCTGGGCCGCTGGGCCCA-CTTCACAG----------------------CCAG-----AGCTCCTGAGC----GCTGTACAGAACACACTCGCGTCCCCTCCACAGGTGCCCCTGGCCTAGAG s galGal2.chr18 4056027 186 - 8919268 GAAAAAGCGAT-----------------------CTGATAGCATTTAACGTAATAAAAGACCTGCCATAGGGAGCCCTGCAG--------CTTATTCTGATG---------AAGCAAAGGTGGCCCAAA-----GCAGCCAGCTGGG-CACAGCACAACGCTTCGCTG--GGGACGGCAGG-----CAGTGCTGGGGTCAGCTCGAGGCC----ACTG--CCA-------------GCGCTCTGC------CGTCCTGCTGGCC s fr1.chrUn 257730449 113 - 349519338 GGAATCACAAT-----------------------TAGGC--C------------------------CAGTCGTCTTTTAAAA-----------A-CATAACA---------AAGAA-----------------------GAAATGATGAGCGGAAAAAG-TTCCG---------------------CAGCACTT-----ATCGTCCAGTT----------CAG----------------TTCTTCA-----CAATAACCCAAAC a score=288339.0 s hg17.chr17_random 1850723 197 + 2618010 CTGCGGTG-CTACCTTNCTCAATGGAGCTGATGGTGACGCCGGCCGCGCAGGACACCACAATGTGTCTGTCCNTCAATGTCGGCGCCTATTTCATCCAGGATGAAGGGGAT-GATGTGTGGCTTCACAGCCAGGAAGAGCACATCACTGTGCTGCACCGTCTCCTTGTTGTGGGGTGTCAACTTCACCCCCATCTTCTG s panTro1.chr19 81251269 195 + 82489036 CTGCGGTG-CTACCTT-CTCAATGGAGCTGATGGTGACGCCGGCCGCGCAGGACACCACAATGTGTCTGTCC-TCAATGTCGGCGCCTATTTCATCCAGGATGAAGGGGAT-GATGTGTGGCTTCACAGCCAGGAAGAGCACATCACTGTGCTGCACCGTCTCCTTGTTGTGGGGTGTCAACTTCACCCCCATCTTCTG s mm5.chr11 120313230 196 + 121648857 CCGTGGCACCCACCTT-TTCGATGGAGTTGATGGTGACCCCTGCCGCACAAGACACCACAATGTGCCTGTCC-TCAATGTTCGCCCCAATTTCATCCAGGATGAAGGGGAT-GATGTGTGGCTTCACAGCCAGGAAGAGCACATCACTGTGGCGCACAGTCTCTTTGTTGTGGGGTGTCAGGTTCACCCCTATCTTCTG s rn3.chr10 110048732 196 + 110733352 ACGGGACACCCACCTT-TTCAATGGAGTTGATGGTGACACCTGCCGCACAGGACACTACAATGTGCCTGTCC-TCAATGTTAGCACCAATTTCATCCAGGATGAAGGGGAT-GATGTGGGGCTTCACAGCCAGGAAGAGCACATCGCTGTGGCACACCGTCTCCTTGTTGTGGGGTGTCAGGTTCACCCCTATCTTCTG s canFam1.chr18 30429512 196 + 66173745 CCACAGTGCCCACCTT-CTCGATGGAGCTGATGGTGACACCAGCTGCGCAGGACACCACGATGTGCCGATCC-TCGATGTGGGCGCCAATCTCGTCCAGGATAAAGGGGAT-GATGTGTGGCTTCACGGCCAGGAAGAGCACGTCGCTGTGCCGCACGGTCTCCTTGTTGTGGGGGGTCAGGTTCACTCCCATCTTCTG s galGal2.chr18 4056213 187 - 8919268 CTGCCCGGCTCAGCAC-CAC----------CCGGCCCTCCCGGCAGCGCAGGAGACCACGGTGTGACGCTCC-TCGATGTCAGGCCCCACCTCGTCCAGGATGAATGGGGTAAATGGGGGCCTTCATGGCCAGGAAGAGGACGTCGCTGCTCTTCACCGTGTCCTCGTTGCTCACCGTGAAGTTCACGCCCATTTTCTG s fr1.chrUn 257730562 187 - 349519338 ---------TCGCCTT-CTCTATAGAGTTGATGGTGACACCTGCAGCACAGGACACGATGAGGTGGCGGTCC-TCAATGTCTGGTCCAATCTCATCCAGCACGAAGGGAAT-GATGTGCGGCTTCACAGCCAGGAACAGGACATCGCTTTTACTGACTGTCTCTTTGTTGCTGGTGGTGAAGTTAACACCCAGTTTCTG s danRer1.chrUn 244530733 195 - 367113659 CAGCAGTC-TGACCTT-CTCGATGGAGCTGATGGTCACTCCTGCAGCACAGGAGACGATGAGGTGGGGGTCT-TCAATGTCTGGGGCGATCTCGTCCAGGACAAAGGGAAT-GATATGAGGCTTGACCGCCAGGAAAAGGACGTCACTCTTGCTCACGGTCTCTTTATTACTGGTGGTGAAGAACGCTCCCATTTTCTG a score=269.0 s hg17.chr17_random 1850920 17 + 2618010 CAG---GGGCAACAG-GTGGG s panTro1.chr19 81251464 17 + 82489036 CAG---GGGCAACAG-GTGGG s mm5.chr11 120313426 20 + 121648857 CAGGGAGGGGTGCAA-GGAGA s rn3.chr10 110048928 16 + 110733352 CAG---GAGC-GCAA-GGAGA s canFam1.chr18 30429708 18 + 66173745 CAG---GGAATGCAGCGTGGG s galGal2.chr18 4056400 17 - 8919268 CAG---CGGTAGAGA-GAAGC s fr1.chrUn 257730749 17 - 349519338 TAT---ATATAAAAA-GAGAG a score=7655.0 s hg17.chr17_random 1850937 19 + 2618010 CTCAGCCTGGTCCCGTGGC s panTro1.chr19 81251481 19 + 82489036 CTCAGCCTGGTCCCATGGC s mm5.chr11 120313446 19 + 121648857 CCCAGCTTGCCTCATGGGC s rn3.chr10 110048944 19 + 110733352 CCCAGCTTGCCTCATGGGC s canFam1.chr18 30429726 19 + 66173745 CTCAGCCTGGCACCGCAGC s galGal2.chr18 4056417 19 - 8919268 GACGACTGTGGCTCGGGGC a score=23286.0 s hg17.chr17_random 1850956 275 + 2618010 TGTCTGTACCCCCA---------CCAAGCCAAGAGCCCCACAGGTAGAATGGCACAGAGAATGCTGGNANGTTNGGGGGTGGGNCA---GGGNCTGGGGGCTCAGG-----GCTCTGACCACCCCNCNTTNGATGAC-CCTTCCCACCCAGAAATGGAGGAAGAACTCTG-TGTGGAATATGTCCCTGCTGCAGACAGAAAAGGACCC----TCCATCCATGCCACCAATCTGCCC-------CCAGCCT---GGGACTGCC---------GTC-CTCCAGAC-CGGGCTCTCCACGTGGGAGTGGTGGTCTCAAGC---------------------------------------------AG------------------ s panTro1.chr19 81251500 271 + 82489036 TGTCTGTACCCCCA---------CCAAGCCAAGAGCCCCACAGGTAGAATGGCACAGAGAATGCTGG--AGTT-GGGGGTGGG-CA---GGG-CTGGGGGCTCAGG-----GCTCTGACCACCCCC---TTGATGAC-CCTTCCCACCCAGAAATGGAGGAAGGACTGTG-TGTGGAATATGTCCCTGCTGCAGACAGAAAAGGACCCTCCATCCATCCATGCCACCAATCTGCCC-------CCAGCCT---GGGACTGCC---------GTC-CTCCAGAC-CGGGCTCTCCACGTGGGAGTGCTGGTCTCAAGC---------------------------------------------AG------------------ s mm5.chr11 120313465 226 + 121648857 CATCTATCTGCCCA---------CAAAGCTGAGAGCCCTGTGTGTAGTGAGGCCCAGAGGCTGCTGG-----------GTGAG----------------------------------------------------------------------ATGGGAAAGGCACTATGCCCTGGAATAGGTCCCCTTTGAAGTAGAAAAGGGACATCACAGACTTCTAAACCACAGCCCAGCCCAGCCCAGCCCACCT---CGGGCAGCA---------GTCTCTGCAGCTGCCTGCCTTCCAGATGTGGGTGGTGGTCTCAAGCTGGGAG------------------------------------CCTGG------------------ s rn3.chr10 110048963 201 + 110733352 TG-----------------------------AGAGCCCCATGAGTAGAGGGGCCCAGAGGCTGCTGG-----------GTGAA----------------------------------------------------------------------ATGGGAAAGGCACTATGCCCTGGAATGTGTCCCCTTTGAAGTAGAAAAGGGACATCACAGACTTCTAAACCACAGCCCGGCCC-----ATCCCACCT---CAGGCTGCCATGGCTGCAGTCTCTGCAGCTGTCTGCCTTCCAGATGTGGGTGGTGGTCTCAAGC---------------------------------------------TG------------------ s canFam1.chr18 30429745 322 + 66173745 TGGCTGGCCCCCCAGTATCCTCCCCAAGCTAAGAGCCCCACACGTGGACTAGGGCAGAGCTTGCTGA---------GACTGGA-CAGCCGGGGTTGGAGGCTCGGTATGGCGCTCTGACAGCCCCC-------TGCCACCCTTCCACCCTGAAGTGGAAGGAGCGCTGCT-CTGGGAATGTGATCCTTCCGCAAGAAAAGAAGAGATGTGCATC-----------------------------CCCGCCTTGGGGGGCTGCT---------GTC-TTCCAGGG--GTGCGTGGCAT-TGGGGGGGCTAGTTGCAAGCTGGGGGCCCGCCCCGCCCTCGCACCTGGGGCCCTAATTCAGCCCTGGCAGCGAAGCTGTATTCAG a score=2465.0 s hg17.chr17_random 1851231 69 + 2618010 CCCCC--------------------------------------------------AGGTGTGTT--------------CCTTGGCTGCCAGGCTGTGGCCCCACCTGCCAGGCCCCCAGAGGACCCCTCGAAA s panTro1.chr19 81251771 69 + 82489036 CCCCC--------------------------------------------------AGGTGTGTT--------------CCTTGGCTGCCAGGCTGTGGCCCCACCTGCCAGGCCCCCAGAGGACCCCTCGAAA s mm5.chr11 120313691 127 + 121648857 CCCCCCATCCCCCAATCCTTAGCCTGAAAATCCTGGCTGAGCCATACCAAACAGAAACTGTGTCATCCATCATCATCACCCTAGCCAACTGTTTGATCTCCATGCTGCCTGGCCTTCCGGAGGCCTC------ s canFam1.chr18 30430067 67 + 66173745 TGCCT--------------------------------------------------GGATGTGTC------------TGACCTGGCCCCAATCCCGAGGCCCCGTCTGCCTGGCTCCT--GCGGCCCCGGGG-- a score=18393.0 s hg17.chr17_random 1851300 63 + 2618010 CTTTAACCCTGTGCAGGGAACTCCATTCCAGAACAACA---CCCTCCTATCAGCTGTACACACGCC s panTro1.chr19 81251840 63 + 82489036 CTTTAACCCTGTGCAGGGAACTCCATTCCAGAACAACA---CCCTCCTATCAGCTGTACACACGCC s mm5.chr11 120313818 63 + 121648857 CATAACCCCCATCTAGGTAACCCCATTCCAGACTAGCAC-TCTCTCCTACCAGCTGTATTCACG-- s rn3.chr10 110049309 60 + 110733352 TATAACCCCCATATAGGTAACC-----CCAGACTAACAC-CCTCTCGTACCAGCTGTATTCACAAC s canFam1.chr18 30430134 66 + 66173745 GGGGGGCTCCATTTGGGGGGCCCCATTCCAGTCCAGCACACCTTCCCTGCTAGCCGCCTGTGTACC a score=3253.0 s hg17.chr17_random 1851363 34 + 2618010 CACCACCCAGGTCCCAAGAGC--AATCAGCAGGGCG s panTro1.chr19 81251903 34 + 82489036 CACCACCCAGGTCCCAAGAGC--AATCAGCAGGGCG s mm5.chr11 120313881 8 + 121648857 ----------------------------ACAGGGCA s canFam1.chr18 30430200 36 + 66173745 TGTCACCCAGAGGCCAAGAGCTGAACAAGAGGGGCT a score=911.0 s hg17.chr17_random 1851397 35 + 2618010 AGGAGGTGGGGTCCATGAGACCCCAGCCCAGGGCC s mm5.chr11 120313889 35 + 121648857 GGGGAGCAGTACCTGCGGGTTCCCAATGGCAGATT s canFam1.chr18 30430247 35 + 66173745 AGGAGGCAGGCTCTGGGATGCTGTAGCCCGGGCCC a score=-2290.0 s hg17.chr17_random 1851432 69 + 2618010 CCTGNCCCTCACTGGGGTGGGGGCTACAG-----------------CACACACTCCTGCCTCTCACA---------------------CCC-AGCCCCACAGGGACTC s mm5.chr11 120313924 64 + 121648857 TGTGTCTCCTACTGGAGTCAGGTGTGCAG-----------------CAAA----ACTAACCCT-AGA---------------------CCC-AACTCTAAAGAGCTTC s rn3.chr10 110049441 64 + 110733352 CCTGGCCCTCAC-AAGGTGAGGTGTGCTG-----------------CACA----CCTAACACT-AGA---------------------CCCTAACGCTAAAAAGGTTC s canFam1.chr18 30430282 96 + 66173745 --TCCTCCTGTGTGGGGGGCGGCGAGCTGTCTCCCCCTGGGGCCTTCACA----CTTGGCTCTCAGGGTCCAGGCTATCGCGGCTCTCCCC-AGCAC----AGGACT- a score=981.0 s hg17.chr17_random 1851501 13 + 2618010 AGTCTCC-------TTTCTC s panTro1.chr19 81252040 13 + 82489036 AGTCTCC-------TTTCTC s mm5.chr11 120313988 13 + 121648857 AGGCTTT-------CAATCT s rn3.chr10 110049505 13 + 110733352 AGGCTTT-------CTATCT s canFam1.chr18 30430378 20 + 66173745 AGCCCCTTCGGGGACTGCCC a score=4055.0 s hg17.chr17_random 1851514 11 + 2618010 CCTTTCATCT-G s panTro1.chr19 81252053 11 + 82489036 CCTTTCATCT-G s mm5.chr11 120314001 12 + 121648857 GCTTTCACCTGG s rn3.chr10 110049518 12 + 110733352 GCTTTCGCCTGG s canFam1.chr18 30430398 12 + 66173745 CCTCCCACCCCG s galGal2.chr18 4056459 11 - 8919268 CCGCCCGCCC-G a score=14483.0 s hg17.chr17_random 1851525 21 + 2618010 CACCTACCCTGAGAGCAGNAA- s panTro1.chr19 81252064 20 + 82489036 CACCTACCCTGAGAGCAG-AA- s mm5.chr11 120314013 20 + 121648857 CACCTACCCGGAGGGCCG-AG- s rn3.chr10 110049530 20 + 110733352 CACCTACCCGGAGGGCAG-AG- s canFam1.chr18 30430410 20 + 66173745 CACCTACCCTGAGGCCAG-AA- s galGal2.chr18 4056470 20 - 8919268 CACTCACCCGCAGCCCTC-TG- s danRer1.chrUn 244530994 21 - 367113659 CACTCACTCTCAGGCCAA-TGA a score=0.0 s hg17.chr17_random 1851546 1 + 2618010 A a score=1911.0 s hg17.chr17_random 1851546 1 + 2618010 A s panTro1.chr19 81252084 1 + 82489036 A s mm5.chr11 120314033 1 + 121648857 A s rn3.chr10 110049550 1 + 110733352 A s canFam1.chr18 30430430 1 + 66173745 A s galGal2.chr18 4056490 1 - 8919268 A s fr1.chrUn 257730891 1 - 349519338 A a score=88135.0 s hg17.chr17_random 1851547 55 + 2618010 CTGTGGCCAGGTCCATGTCTGGGGAGCTAGCCATTATCTTGTGGGCAGCCAAGAC s panTro1.chr19 81252085 55 + 82489036 CCGTGGCCAGGTCCATGTCTGGGGAGCTAGCCATTATCTTGTGGGCAGCCAAGAC s mm5.chr11 120314034 55 + 121648857 CCGTAGCTTGGTCCATGTCTGGGGAGCTGGCCATTATCTTGTGTGCAGCCAGAAC s rn3.chr10 110049551 55 + 110733352 CTGTGGCTTGGTCCATGTCTGGGGAGCTGGCCATTATCTTGTGAGCAGCCAGAAC s canFam1.chr18 30430431 55 + 66173745 CCGTGGGCAGGTCCATGTCCGGGGAGCTGGCCATGATCTTGTGGGCAGCCACGAT s galGal2.chr18 4056491 55 - 8919268 CGGTGGGCAGCTCGGTGTCCGGGGAGCTCGCCGTTATCTTGTGCGCTGCCAGGAC s fr1.chrUn 257730892 55 - 349519338 CCGTGGGGAGATCTCTTTCAGGGGCGCTGGCTGTGATTTTGTGGGCGGCGATCAC s danRer1.chrUn 244531015 55 - 367113659 CCGTCGGCAGGTCAGTGTCTGGAGAACTCGCTGTTATCCTGTGTGTGGCGATCAC a score=9533.0 s hg17.chr17_random 1851602 9 + 2618010 GCCTGAGGG s panTro1.chr19 81252140 9 + 82489036 GCCTGAGGG s mm5.chr11 120314089 9 + 121648857 ACCTGTAGG s rn3.chr10 110049606 9 + 110733352 ACCTGTAGG s canFam1.chr18 30430486 9 + 66173745 GCCTGCAGG s fr1.chrUn 257730954 9 - 349519338 AATTGAGGG s danRer1.chrUn 244531070 9 - 367113659 ACCTGATGG a score=-4365.0 s hg17.chr17_random 1851611 5 + 2618010 GAGAA- s panTro1.chr19 81252149 5 + 82489036 GAGAA- s mm5.chr11 120314098 4 + 121648857 G-GAC- s rn3.chr10 110049615 4 + 110733352 G-GAC- s canFam1.chr18 30430495 4 + 66173745 T-AAC- s fr1.chrUn 257730963 5 - 349519338 T-AAAA a score=-1980.0 s hg17.chr17_random 1851616 4 + 2618010 ACAG- s panTro1.chr19 81252154 4 + 82489036 ACAG- s mm5.chr11 120314102 4 + 121648857 AGAA- s rn3.chr10 110049619 4 + 110733352 AGAA- s canFam1.chr18 30430499 4 + 66173745 ACCC- s fr1.chrUn 148511923 4 + 349519338 -GAAG a score=2606.0 s hg17.chr17_random 1851620 6 + 2618010 TTCCTC s panTro1.chr19 81252158 6 + 82489036 TTCCTC s mm5.chr11 120314106 6 + 121648857 TTCCTC s rn3.chr10 110049623 6 + 110733352 TTCCTC s canFam1.chr18 30430503 3 + 66173745 TTC--- a score=913.0 s hg17.chr17_random 1851626 5 + 2618010 TTCAG s panTro1.chr19 81252164 5 + 82489036 TTCAG s canFam1.chr18 30430506 5 + 66173745 CTCAA a score=26544.0 s hg17.chr17_random 1851631 323 + 2618010 ttctttattatttttttttttttgagacggagntnctcngnctgtgttgcccnaggctggagtgcagtggcgcaatctcggctcactgcaagctccacctcccgggttcacgccatgctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacacccggctaatttttggtatttttagtagnagacggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccGGAAACAGTTCCT s panTro1.chr19 81252169 316 + 82489036 ttctttttt-tttttttttttttgagacggagt--ctcg--ctgtgttgccc-aggctggagtgcagtggcgcaatctcggctcactgcaagctccacctcccgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcacctgccaccacacccggctaatttttggtatttttagtag-agacggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgccctcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggACGGAAACAGTTCCT a score=6234.0 s hg17.chr17_random 1851954 16 + 2618010 CTTCATGGCTAGCTTT s panTro1.chr19 81252485 16 + 82489036 CTTCATGGCTAGCTTT s mm5.chr11 120314112 16 + 121648857 CCTCAAAGCTAGTTCT s rn3.chr10 110049629 16 + 110733352 CCTCAAAGCTAGTTCT a score=22671.0 s hg17.chr17_random 1851970 127 + 2618010 GGCTTCCCTCCCTCCCCATTCCCAGGAAGAAGAGTGAGACAGCA--------------------CAGGTAA--AGCCCCAAACACACAGAAG--TTGCCAGTTCCCGCAGGACTCAGGCCTTGTGACCCAG-CACCCACCTTCAGCCCCCAG s panTro1.chr19 81252501 127 + 82489036 GGCTTCCCTCCCTCCCCATTCCCAGGAAGAAGAGTGAGACAGCA--------------------CAGGTAA--AGCCCCAAACACACAGAAG--TTGCCAGTTCCCCCAGGACTCAGGCCTTGTGACCCAG-CACCCACCTTCAGCCCCCAG s mm5.chr11 120314128 135 + 121648857 AG--------CCTCTCAGCTCCTATGAGGGAGACAGCTGAAGCA------TCCTTCACCTCCTTTAGGGAAGCAACCCCAAACATATGGCAG--CTGTCATTTCCCAAAGGACTGAGGCCAC-TAACACAGACACTCCACGCTAGCACCCTC s rn3.chr10 110049645 148 + 110733352 AGCCTCTCTGCC-CCACACTGCTACGATGATGAAGGAGACGGCAGAAACACCCTTCACCTCCTTTAGGGAAGCAACCCCAAACATATGGAAG--CTGCCATTTCCCAAAGGACTGAGACCAC-TAACACAGACACTCCAGGACAGCACCCTC s canFam1.chr18 30430511 99 + 66173745 GGCCTGCCCCCCATCCAGTTCCCAGGAAGGGAAGTGG------A-----------------------------GATCCCCCACCCCCAGCAGGACAGCCAGCCCCC----------GCCCAC----CCCAAACATCACA----AGGACCCAG a score=6499.0 s hg17.chr17_random 1852097 16 + 2618010 CCCTGCAGAAGTGGAA s panTro1.chr19 81252628 16 + 82489036 CCCTGCAGAAGTGGAA s mm5.chr11 120314263 16 + 121648857 CCTGGCAGCAGCAGAA s rn3.chr10 110049793 16 + 110733352 CCCAGCACCAGAGGAA s canFam1.chr18 30430610 16 + 66173745 TCCCACAGGACTCAAA s galGal2.chr18 4056546 16 - 8919268 CCCTGCGGATACAGCG a score=-206.0 s hg17.chr17_random 1852113 11 + 2618010 AGAGGCCAGTC----- s canFam1.chr18 30430626 11 + 66173745 CAAGGCGAGTC----- s galGal2.chr18 4056562 13 - 8919268 ---AGTCAGCccgggc a score=979.0 s hg17.chr17_random 1852113 11 + 2618010 AGAGGCCAGTC----- s panTro1.chr19 81252644 11 + 82489036 AGAGGTCAGTC----- s canFam1.chr18 30430626 11 + 66173745 CAAGGCGAGTC----- s galGal2.chr18 4056562 13 - 8919268 ---AGTCAGCccgggc a score=-1156.0 s hg17.chr17_random 1852124 5 + 2618010 -TCTCC s panTro1.chr19 81252655 5 + 82489036 -TCTCC s rn3.chr10 110049809 5 + 110733352 -TCTAC s canFam1.chr18 30430637 4 + 66173745 --TTCC s galGal2.chr18 4056575 4 - 8919268 acct-- a score=797.0 s hg17.chr17_random 1852129 30 + 2618010 CACTGGGCCT----CACCGTCC-CCCACCTGGGGG s canFam1.chr18 30430644 31 + 66173745 CGCCCAGCTC----CCGCGCCCGCCCGGCTGAGGG s galGal2.chr18 4056579 34 - 8919268 cgccgggcacctcgccACGCCC-CCCGGCCCCACA a score=4391.0 s hg17.chr17_random 1852129 31 + 2618010 CACTGGGCCTCAC----CGTCC-CCCACCTGGGGGC s panTro1.chr19 81252660 31 + 82489036 CACTGGGCCTCAC----CGTCC-CCCACCTGGGGGC s canFam1.chr18 30430644 32 + 66173745 CGCCCAGCTCCCG----CGCCCGCCCGGCTGAGGGA s galGal2.chr18 4056579 35 - 8919268 cgccgggcacctcgccACGCCC-CCCGGCCCCACAC a score=-908.0 s hg17.chr17_random 1852159 2 + 2618010 CC- s canFam1.chr18 30430675 2 + 66173745 AC- s galGal2.chr18 4056613 2 - 8919268 CC- s fr1.chrUn 148512026 2 + 349519338 -CT a score=300.0 s hg17.chr17_random 1852160 1 + 2618010 C s panTro1.chr19 81252691 1 + 82489036 C s mm5.chr11 120314283 1 + 121648857 C a score=92778.0 s hg17.chr17_random 1852161 82 + 2618010 TACCTGCTGCTGTGAAGCCCTTGGCCAGGGCAAAAGCCAGCTGGCCAGCGCCGATGAAGCCCACGCTCA---TGCTGTCCGGAG-A s panTro1.chr19 81252692 82 + 82489036 TACCTGCTGCTGTGAAGCCCTTGGCCAGGGCAAAAGCCAGCTGGCCAGCGCCGATGAAGCCCACGCTCA---TGCTGTCCGGAG-A s mm5.chr11 120314284 79 + 121648857 TACCTGCAGCTGTGAAGCCCTTGGCTAGAGCAAAGGCTAGCTGCCCTGCCCCGATGAAGCCTACGCTCA------TGTCTGGAG-G s rn3.chr10 110049814 79 + 110733352 TACCTGCAGCTGTGAAGCCCTTGGCTAGGGCAAAGGCTAGCTGCCCTGCCCCGATGAAGCCTACGCTCA------TGTCTGGAG-T s canFam1.chr18 30430678 79 + 66173745 CACCTGCCGCCGTGAAGCCCTTGGCCAAGGCAAAGGCCAGCTGGCCGGCGCCGATAAAGCCGACGCTCA---TGGTGTCGGG---- s galGal2.chr18 4056615 86 - 8919268 CACCTGCCGCCGTGAAGCCCCGGGCCAAGGCGAGGGCGAGCTGCCCGGCCTCGATGAATCCCACGCTCGTGGTGCGGTGCGGAGCG s fr1.chrUn 148512028 82 + 349519338 CACCCGCAGCTGTAAACCCTTTAACCAGTGCGTGAGCCAACTGGCCTGCTCCAATAAACCCAACGCTCA---TCCTGTTTGATG-A a score=10606.0 s hg17.chr17_random 1852243 297 + 2618010 CCCC-TGGCCCAAAGCCCCCACAGATGGCA-CCGGCNNTGCGGGAC----GAG------AC-------------CGGCAGGATCGAGAGCAA---GTTAGG--GGGGCAGTGCC-AGCCTGGCC----------GCTCCTCCCGCAGCCGGG-T------------GCCCACCTCCCCTGG-----------------TCCCAGCTGGTCTAACTTTCCA-----CTTTGCTGTCCGGCCCGTT---------AACTG-CTTCGGG-----GCCC----------------------------------------CCAGTCAGAGCGGCGG----TGCCTGGC--CTGCTGCCTAGGGNTCCCGCACCCACTGGAGGGGTGGAGGTTCCGCAGAAGAAATGACTG------GGAAGGGGGAAAAGTACGGGGAGAGGGAG s panTro1.chr19 81252774 300 + 82489036 CCCCCTGGCCCAAAGCCCCCACAGATGGCA-CCGGCTCTGCGGGAC----GAG------AC-------------CGGCAGGATCGAGAGCAA---GTTAGG--GGGGCAGTGCC-AGCCTGGCC---------AGCTCCTCCCGCAGCCGGGAT------------GCCCACCTCCCCTGG-----------------TCCCAGCTGGTCTAACTTTCCA-----CTTTGCTGTCCGGCCCGTT---------AACTGTCTTCGGG-----GCCC----------------------------------------CCAGTCAGAGCGGCGG----TGCCTGGC--CTGCTGCCTAGGG-TCCCGCACCCACTGGAGGGGTGGAGGTTCCGCAGAAGAAATGACTG------GGAAGGGGGAAAAGTACGAGGAGAGGGAG s mm5.chr11 120314363 327 + 121648857 TCCA-CGACCCACAACTTTCACAGCTGACG-CCGGCTCTGTAGGGCAGCAGAGAACTGTAC-------------CGACAGGACGGAAAGAGAGACGTCGGG--TGGGTAATACCAAGTCTGGCC----------GTTCCT--AGCAGCCAGG-T------------GCTCCCCAACCCCCA-----------------CCCCAGCCTGCTTAA-TTTCTA-----TGTTGCTCCTCGGCTGGCCGGGTTGGGAAGTTGTCCCAGGT-----ACCCCGACAC---------------CCCGTACCACTACCACCCGCCGCCCAGAGCCAGGA----TGCCTGGT--CTGCAGCTGAAGG-TTCTGAGCCTTCTGCAAAGG----------GCTCAGGGAGCCAAAA------GGAAAGAGATTGATT-----GAAGGGGAG s rn3.chr10 110049893 327 + 110733352 TCCA-GGACCCACAACCTTCACAGCTGACGTCCGGCTCTGTAGGGCAGCAGAGAACTGTAC-------------GGACAGGATGGAAGGCGAGACGTCGGG--TGGGTGGTAACAGGTCTGGCC----------GCTCCT--GGCAGCCAGG-T------------GCTCCCCAACCCCCA-----------------TCCCAGCCTGCCTAA-TTTCTA-----TGTTGCTCCTCGGCTGGCT-----GGAAAGTTGTCCCACGT-----ACACCGACACCACGTACCACCACCACCCA---------------CCGCCCAGAGCCAGGATGCCTGCCTGGT--CTGCAGGTGAAGG-TTCTGAGCCCTCTGCAAAAG-----GCTCAG-----GGAGCCGTAA------GGAAAGCTACCGATT-----GTAGGGGAG s canFam1.chr18 30430757 317 + 66173745 ---C-GCGCCCACAGCTCC--AGGCCGGCA-CCGGCGCTGCAGGGCAACTGCGGACCAGAcggggcaggatccggggcaggatccagggcaggaCGT-GGG--CGGGCAGTGCCAGgcctggccccgcgccccggctccc-------cccgg-c------------tccccccgtctcc-------------------tcccgccccgtccAACTTTCCC-----CCAAGC------GCCCGCC---------AGCTCCGACCGGGCAGTTACCCCCGTCC----------------------------------CCGCCCCGCGGAGCCG----TCCCCGAC--CTGCTCCCGGGGA-TCCCGCAC-------------GGAGGACAcgcgggcggccgcgccggcccccggAGCGGGTCAGAGCTCCGCGGGGGCGAC s galGal2.chr18 4056701 305 - 8919268 ACCA-AAGCCCA---CCTGCAACCGCGCCG-CCGTCCACGTGG-----CTGCGCTCCGCTC-------------AGAGAGGCGGTGTCGCGGCCCATTGGGGCGGGGCGGAGGC--GCGCAGCC----------AATCGTCGAGCTGAGGGG-CGGGACCACGCCGGCTCTCCGCCTCTCAAGGGCGAGGGGCGGGGCCTCCGGCTGAGCCC--TCGCCAGCGATTGGTGCAACTCGCTCCGGG---------TGTTGCATCATTC-----ACCGC---------------------------------------CTACGCGGACCGCCCG----GGGCCGGCCGCTGCCTCTCAG---CTCCGAGCCGCCAGGGGGCGCTCTCGTCCCGCC---GCAGCCGCGC------G---------------------------- a score=-4783.0 s hg17.chr17_random 1852540 52 + 2618010 GGCCCGGCGCCTAGGGGTCCCC-------------CGTCTGGGTTCCCACCCCG---CCCAGAACTGG s panTro1.chr19 81253074 52 + 82489036 GGCCCGGCGCCTAGGGGTCCCC-------------CGTCTGGGTTCCCACCCCG---CCCAGAACTGG s mm5.chr11 120314690 54 + 121648857 GGTCAGGAATCCAGCGAACCCTCA----------ACATCCAAGTCTCCAGCTTATTTCCCAGAA---- s rn3.chr10 110050220 55 + 110733352 GGTCGGGAATCCAGAGAACCCTCA----------ACATCCAAGTCCCCAGTCTG---TCCTCAGCTTA s canFam1.chr18 30431074 45 + 66173745 GCATCGGAGCCC--GGGCCCCC----------------CCAGGCCCCC--CCAG---ACCCGAGCCGG s galGal2.chr18 4057006 46 - 8919268 ----CGGAGCGCGGTCTCTTCTGG----------AAGCTTCGGGCCCCGCCCTG---CGCTGA----- s danRer1.chr18 8424006 62 - 26817969 GGCCCTTCACCTAGGGGCCTCTGACCCCAGAAAGCTACCCAGGGGTCCACCTCT-CTCCCTGG----- a score=-9223.0 s hg17.chr17_random 1852592 196 + 2618010 ---GCTACCGTCGCGCCCCA-----CCCGGCGACCGC--NCGCCCACCATTCCCGGAG-------CCCGA---CCCCAAC--CCAGCTACC--GTGCGCGGGTC-----GTACCCACCC---------CTCAGCGC----TGCGGC-----CGCCACGCGGCACCCGCACCCA--GGCCCCGCCCCCG--TCGCGCCAGCGAAT---CCGGGCGCGGCCGCCAG-GCGCTGGCCAAT-CAGAGCGCGCGGC-G s panTro1.chr19 81253126 195 + 82489036 ---GCTACCGTCGCGCCCCA-----CCCGGCGACCGC---CGCCCACCATTCCCGGAG-------CCCGA---CCCCAAC--CCAGCTACC--GTGCGCGGGTC-----GTACCCACCC---------CTCAGCGC----TGCGGC-----CGCCACGCGGCACCCGCACCCA--GGCCCCGCCCCCG--TCGCGCCAGCGAAT---CCGGGCGCGGCCGCCAG-TCGCTGGCCAAT-CAGAGCGCGCGGC-G s mm5.chr11 120314744 216 + 121648857 --------------GCCCCA-----GCCCCTAAGCCT---------TCATTCCAGGAGTTCCATCCCCGAAGCCCCAAGT--CCCGCTACCCACAGCGTGGATATTCGGGTACACACACAACAGACAGCCCAGCCCTTCTTGCATT-----CGCCACGCGGCACCCGCGCCCACCGGCCCCGCCCTCACTTCATTTCAGCCAATGAGCTGTGCGC-CCTGTGAGAGAGCTAGCCAATCCAGAGC-TGCAGCTG s rn3.chr10 110050275 134 + 110733352 ---TTTCCCACAA-GCCCCA-----TCCCCTAAGCCT---------TCATTCCAGGGGTCCCATCCCTGGAGCCCCAAGT--CCCGCTACC-------------------------------------CACAGCGT----GGCTAC-----TCTGGCGC-ACACCTACGAC----AGTCCAGCCCTCT-------------------------GCATTCGCCAC-GCGGCA---------------------- s canFam1.chr18 30431119 205 + 66173745 ---GACGCGGATGCGCGTCT-----CCCCTGCGCCGCCCTCACGCGCGACCTCAGCTGTG-----CCCGA---CCCCACTCACCGGTCCCC--GCGCGCAGGTC-----GCCCAggccc---------cgcggagc----cgcgcc-----cgccacgcggcaccccagcctcccggccccgcccccg--ccgccccggccAATGGGCT--GCGCGGCCGCCAG-GCGCCGGCCAAT-CGGGGGCCGCGGG-G s danRer1.chr18 8424068 197 - 26817969 ACTTGCATTGTAG-GCCTCAGGGTGCCCCCTTGCCCT---------CCACCTAAGGGCC------CCTGA---CCCCAG---CAAGCTACC-----CAGGGGTC-----CACATCTCTT---------CCTGGACT----TGCAGTATAGGCCCCAGGGTGCCCCTTGGTCCTCCACCTAAGGGCCCC--TGACCCCAGCAAGCTACCCAGGGGTCCACCTCTC-TCCCTGGACATG-CAG----TGTAG--- a score=751.0 s hg17.chr17_random 1852788 27 + 2618010 GCGCCAGAGCGGTTGCATCATNTGCGC s canFam1.chr18 30431324 20 + 66173745 -------GGCGGTTGCATCATCCGCTC s danRer1.chr18 8424265 27 - 26817969 GCCCCAGGGTGCCCCCTTGCCCTCCAC a score=2919.0 s hg17.chr17_random 1852788 21 + 2618010 GCGCCAGAGCGGTTGCATCAT---- s panTro1.chr19 81253321 21 + 82489036 GCGCCAGAGCGGTTGCATCAT---- s mm5.chr11 120314960 21 + 121648857 GAGCCTTGTGCATTGCATCAT---- s canFam1.chr18 30431324 14 + 66173745 -------GGCGGTTGCATCAT---- s danRer1.chr18 8424265 21 - 26817969 GCCCCAGGG----TGCCCCCTTGCC a score=-1413.0 s hg17.chr17_random 1852809 6 + 2618010 N-TGCGC s panTro1.chr19 81253342 7 + 82489036 TCTGCGC s canFam1.chr18 30431338 2 + 66173745 -----CC s danRer1.chr18 8424286 6 - 26817969 -CTCCAC a score=-2731.0 s hg17.chr17_random 1852815 6 + 2618010 GCCCCT- s canFam1.chr18 30431344 1 + 66173745 T------ s galGal2.chr3_random 687699 5 + 1636275 -GACCG- s danRer1.chr18 8424304 6 - 26817969 -GACCCC a score=-352.0 s hg17.chr17_random 1852815 6 + 2618010 -GCCCCT s panTro1.chr19 81253349 6 + 82489036 -GCCCCT s canFam1.chr18 30431340 5 + 66173745 -GCTCT- s galGal2.chr3_random 687700 5 + 1636275 -ACCGC- s danRer1.chr18 8424304 6 - 26817969 GACCCC- a score=-651.0 s hg17.chr17_random 1852821 36 + 2618010 CCCACGCCGACCGCCGGCCCTCGCCTCTCTCGCGCC-------------- s panTro1.chr19 81253355 36 + 82489036 CCCACGCCGACCGCCGGCCCCCCCTTCTCTCGCGCC-------------- s rn3.chr10 110050409 32 + 110733352 CCCGTGCCTACC----GGCCTCGCCCCCATTCCACT-------------- s canFam1.chr18 30431345 20 + 66173745 -----------cccggggccacgcc-----cgcgcc-------------- s galGal2.chr3_random 687705 36 + 1636275 CCGGGGCCGGCCGCTGCCTCTCAGCTCCGATTTGCC-------------- s danRer1.chr18 8424310 50 - 26817969 AGCAAGCCACCCAGGGGTCCACCTCTCTCCCTGGACTTGCAGTGTAGGCC a score=761.0 s hg17.chr17_random 1852857 13 + 2618010 CCGGGATCCCCCG-- s galGal2.chr3_random 687741 13 + 1636275 CCGGGGCGCTCTC-- s danRer1.chr18 8424360 15 - 26817969 CCAGGGTGCCCCCTT a score=2681.0 s hg17.chr17_random 1852857 4 + 2618010 CCGG s panTro1.chr19 81253391 4 + 82489036 CCGG s rn3.chr10 110050441 4 + 110733352 TCAG s galGal2.chr3_random 687741 4 + 1636275 CCGG s danRer1.chr18 8424360 4 - 26817969 CCAG a score=-446.0 s hg17.chr17_random 1852861 9 + 2618010 GATCCCCCG-- s panTro1.chr19 81253395 9 + 82489036 GATCCCCCG-- s galGal2.chr3_random 687748 6 + 1636275 GCTCTC----- s danRer1.chr18 8424364 11 - 26817969 GGTGCCCCCTT a score=2812.0 s hg17.chr17_random 1852870 38 + 2618010 GCCC----CCGGATAGACACCCTCTCCGGCACGCGGTCCCCT- s panTro1.chr19 81253404 38 + 82489036 GCCC----CCGGATAGACACCTTCTCCGGCACGCGGCCCCCT- s canFam1.chr18 30431365 29 + 66173745 gccc----ccgcccag---------ccggtccgcgcccccgc- s galGal2.chr3_random 687754 35 + 1636275 GTCC----CGCCGCAGCCGCGC---GCGGAGCGCGGTCCCTT- s danRer1.chr18 8424375 43 - 26817969 GCCCTCCACCTAAGGGCCCCCCACCCCAGCAAGCTACCCAGAG a score=5501.0 s hg17.chr17_random 1852908 122 + 2618010 GACCCGCGCTCCTCCTGGTCGCGC------------------TTCCCGGGACCTACACGTGGGGTCCGAGGACGCGGGCGG-------AGGGGGCGGCC----------------CGATTGGGGCCTGTGAG-------GGGCCCTCCACGCAGGGCTTTGTCTTGGGCC------ s panTro1.chr19 81253442 122 + 82489036 GACCCGCGCTCCTCCTGGTCGCGC------------------TTCCCGGGACCTACACGTGGGGTCCGAGGACGCGGGCGG-------AGGGGGCGGCC----------------CGATTGGGGCCTGTGAG-------GGGCCCTCCACGCAGGGCTTTGTCTTGGGCC------ s canFam1.chr18 30431394 68 + 66173745 gacc--------------------------------------------------gcgcgTGGGGACTG-------TGCTGG-------GGGCTGCGGCC------------------------------GAG-------GGGTCC-CCGCGCGGGGCCTGGCGGGGGGAC------ s danRer1.chr18 8424418 172 - 26817969 GACCAGCTCTCTCCCTGGACTTGCAGTGTAGGCCCCAGGGTGCCCCCTGGCCCTCCACCAAGGGGCCCATGACCCCAGCAAGCTACCCAGGGGTCCACCTCTCTCCCTGGACTTATAGTAGAGGCCCCAGGGTGCCCCCTGGCCCTCCACCTAGGG----GCCTCTGACCCCAGCA a score=2235.0 s hg17.chr17_random 1853030 52 + 2618010 ACCCGGACACGGACGCGTCCAGCTG--GCGTCCCTG-GGCGCGCGGCCGGCTCTC s panTro1.chr19 81253564 52 + 82489036 CCCCGGACACGGACGCGTCCAGCTG--GCGTCCCTG-GGCGCGCGGCCGGCTCTC s rn3.chr10 110050523 47 + 110733352 ACCGGGACA--GACGCTCCTCCCTGCTCCCTCCCTGAAGTGAGCAGTAG------ s canFam1.chr18 30431462 45 + 66173745 ACGCGGACACGGACACG-----CGG--GTGTCCTCA-GTCGCGGGGCCGGTGC-- s danRer1.chr18 8424590 47 - 26817969 ----AACTACCCAGGGGTCCACCT---CTCTTCCTG-GACTTGCAGTAGAGTCCC a score=5819.0 s hg17.chr17_random 1853082 78 + 2618010 TCTGGGA------ATCAGTCCCTTCTACTGTCATCGAGTTTGGAGAAGCCC-GGCTGTACAG----CGTTTTCTTTCCTTTTTTTTTTT---- s panTro1.chr19 81253616 78 + 82489036 TCTGGGA------ATCAGTCCCTTCTACTGTCATCGAGTTTGGAGAAGCCC-GGCTGTACAG----CGTAATCCTTCCTTTTTTTTTTT---- s rn3.chr10 110050570 62 + 110733352 -TTGGGAATACAGATCAGTACCCACAAAAGCCAC-----------GAGCCC---------------CATTCTCTATCTGTTGTTTTATT---- s canFam1.chr18 30431507 77 + 66173745 -TTGCGG------CTACGT---------GGTCATCCTGTTTGGAGAAGCCCAAACTGTAAGATTTTTGCTTGCTTGCTTTTCTTTCTTTCCTC a score=638.0 s hg17.chr17_random 1853160 3 + 2618010 CCC s panTro1.chr19 81253694 3 + 82489036 TCC s canFam1.chr18 30431584 3 + 66173745 CCC a score=2054.0 s hg17.chr17_random 1853163 60 + 2618010 N--------------TTGGGGGCAGAGTTGAAAATAATTTGCCAAGTGGAAGCATTTTAAATATATCACCATTT s canFam1.chr18 30431587 73 + 66173745 CCCACCTTTTTTTTTTTTGTGGGAGGATTGAAAACAATTTGCAAAATGGAAACATTCAAAA-ATAACACCATTT a score=-520.0 s hg17.chr17_random 1853223 2 + 2618010 -Gg s panTro1.chr19 81253910 2 + 82489036 -Gg s canFam1.chr18 30431660 2 + 66173745 TG- a score=28938.0 s hg17.chr17_random 1853225 348 + 2618010 gccgggcgcggtggctcacgcctgtaatcccagcactttgggaggcncgaggcgggcggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaacccccgtctctactaaaaatacaaaaaattaaccgggncgtggtgacaggtgcctgtaattccagctactcgagaagctgaggcaggagaatcgcttganaccctggaggtggaggttgcagtgagccgggattgcgccactgcactccagcctgggcaacaagagncgagactccnatctgaaaaaaagaga----gagagaaagaaaggaagaaAAGAAGAAA-----AGAAAAGAAAGAGGCATGAC s panTro1.chr19 81253912 352 + 82489036 gccgggtgcggtggctcacgcctgtcatcccagcactttgggaggc-cgaggcgggcggatcacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaacccccgtctctactaaaaatacaaaaaattagccggg-cgtggtgacaggtgcctgtaattccagctactcgagaagctgaggcaggagaatcacttga-accctggaggtggaggttgcagtgagccgggattgcgccactgcactccagcctgggcaacaagag-cgagactcc-atctgaaaaaaaaagacagagagagaaagaaaggaagaaaagaagaaaggaaaagaaaagaaaGAGGCATGAC a score=1768.0 s hg17.chr17_random 1853573 9 + 2618010 AGTGCGGCC s panTro1.chr19 81254264 9 + 82489036 AGTGCGGCC s canFam1.chr18 30432067 9 + 66173745 ACTGAGGCC a score=16640.0 s hg17.chr17_random 1853582 189 + 2618010 ACAGG--TGTTCCTCT---AAC------------------TGGGCACGCAGCGGTGCTCCACTAAGCAAACGAAGGAAGCCCACCCCATCATGCCC----CCACTCCCACGCAGCCCGGAGCATCCTCCAATACCCAAACCTCTCGCCTGC----------------CTGGGTTTTA-----GGGGGAGTGAAGCTCCAGTCACTTCCCCCNTGAGGACATGCTCAGAGTTCATCTG s panTro1.chr19 81254273 188 + 82489036 ACAGG--TGTTCCTTT---AAC------------------TGGGCACACAGCGGTGCTCCACTAAGCAAACGAAGGAAGCCCACCCCATCATGCCC----CCACTCCCACGCAGCCCGGAGCATCCTCCAATACCCAAACCTCTCGCCTGC----------------CTGGGTTTTA-----GGGGGAGTGAAGCTCCAGTCACTTCCCCC-TGAGGACATGCTCAGAGTTCATCTG s rn3.chr10 110050632 158 + 110733352 GCAAG--TGTTTCTTTGAAAGC------------------TAGGCG-----------TCTTCT--GCAGCCAGAGG--------CCCATTACTTCCCGGACCGCTTC--------------TATCCTACAATACCCCAGCTCTCCAACCAC------------------AGGGTTTG-----GGGATAGTG-TGCTTTGGGCATCTGCAACCTCTAGAGGTGTTCAGGGCCCATCTG s canFam1.chr18 30432076 214 + 66173745 ATAGGCTTGTTACCATGTAAACCTCCCCAAACAGATGCTTGGGGTAGGTAGTGATCAACCGGTAAATAGAGGAGAG------ATCCCATAGTGCCCTC--CCACTCC-------CGTGGAACACCCCAT-GTCTACTGACATCTTGTCTGCAGCGTGCATGGAAATGTTGGGCCCTACCTTTGGGAGAAAA-------AGTCATTTTCTCGCTGTGGACATGCTCAGGGCTCATGGG a score=12500.0 s hg17.chr17_random 1853771 87 + 2618010 ATTCGGGCCTGCATCTGGGGCTCTGGATAGT-CAGGGTCCCTGTCGGTGGCCAAGATTAAGGGCGAAGTCAGAAGGGATCANCTGGCA s panTro1.chr19 81254461 86 + 82489036 ATTCGGGCCTGCATCTGGGGCTCTGGATAGT-CAGGGTCCCTGTCGGTGGCCAAGATTAAGGGCGAAGTCAGAAGGGATCA-CTGGCA s canFam1.chr18 30432290 85 + 66173745 AGTTGAGTTTGCATTTGGGTTTCAGGACAGTCCAGGGTCC--GTCAGCAA-CACGGTTAAGGGCAAAGTAAGAAGCAATAGTCATGGA a score=-1543.0 s hg17.chr17_random 1853858 36 + 2618010 --GCCCATTCCCNCTGCCA----------------------------AGGGGTGAGAGGAGCTGCC s panTro1.chr19 81254547 35 + 82489036 --GCTCATTCCC-CTGGCA----------------------------AGGGGTGAGAGGAGCTGCC s rn3.chr10 110050958 61 + 110733352 --GCCCATCCCC-CCACCCTCCATCACACCCCACTCCAGACACCCTTAGAGGTGGTTTGATTTT-- s canFam1.chr18 30432375 29 + 66173745 GAACCCATTCTC-C--CCC----------------------------AGGG--GATATGGTT---- a score=24439.0 s hg17.chr17_random 1853894 75 + 2618010 TTATTTTTTCTGTGCTGTAT-----CTTAGATGATGACAGGCTATTCTAGCACA-TCATTTCAGAAGGCCTGGGATGCTTC s panTro1.chr19 81254582 75 + 82489036 TTATTTTTTCTGTGCTGTAT-----CTTAGATGATGACAGGCTATTCTAGCACA-TCATTTCAGAAGGCCTGGGATGCTTC s mm5.chr11 120315386 81 + 121648857 TTTTTTTTTCTGTTTTGTTTGTTTCCTTAGATAAAGACAAGTTGCTTTAGAAAAGTAAATTTTAAATCACTAGGAAGTTTC s rn3.chr10 110051019 81 + 110733352 TTTTTTTTTCTGGTTTGTTTGTCTCTTTAGATAACGACAAGTTGCTTTAGAAAAGTAATTTTAAAATCACTAGGATGTTTC s canFam1.chr18 30432404 74 + 66173745 TATTTTTTTCAGTTCTGTAA-----CTTAAATGGTAACAAGGTACCCTCAGACG--GGATCCAGCATTCCTCTGGTGGATA a score=1409.0 s hg17.chr17_random 1853969 44 + 2618010 TG--CCACAGCGGCAGGGCCACGCGTTCTGG------------------------CTATCTGTCTACCTG s panTro1.chr19 81254657 44 + 82489036 TG--CCACAGCAGCAAGGCCACGCGTTCTGG------------------------CTATCTGTCTACCTG s mm5.chr11 120315467 44 + 121648857 CAGCCTGCAAGATTTGGGGAAGGAATTTC--------------------------CATCCCTTCTTCTTG s canFam1.chr18 30432478 68 + 66173745 TG--CCCCAGAAGCAGGGCTGTGAGCTCTTGTGGACACGCTGGTGGCCACCAGCACCATCAGACCACTGG a score=-3846.0 s hg17.chr17_random 1854013 72 + 2618010 ----------------------------GTCCCCCCACCG--------TGAACACGTAATGACCACCACCAACACTGGGAGGCTG--------------CTCTGT---GGTGGCCATG-----------------------------------------------------------GGAAGAG s panTro1.chr19 81254701 72 + 82489036 ----------------------------GTCCCCCCACCG--------TGAACACGTAATGACCACCACCAACACTGGGAGGTTG--------------CTCTGT---GGTGGCCATG-----------------------------------------------------------GGAAGAG s mm5.chr11 120315511 113 + 121648857 ----------------------------GCCC------------------------TAATGACCACCACCCAAACGAGGAGACTG--------------CTCTGT---GGTGATAGTGTTC--ACTGTGTGGATGGCTAGTTCAATACTCAACCTCTAAAAAGAGAAGAGCTGGAGAAGAAGAG s rn3.chr10 110051130 107 + 110733352 ----------------------------ATCCCTCCTTCT--------TGGCCA--CAGTGACCACCACCCAAAGTAGGAGGCTGCCTACTTTGGTGTTCTCTGTGTGGATGGCCAATTCCTTACTCA-----------------------ACCTCTAAAA----------------GGAAGAG s canFam1.chr18 30432546 93 + 66173745 GTAGTGACGGTGTGGGCGACTTCCTGGCATCCCCCACTTAGGTGCATCTGAGCATTTAGTCCTTACCCTC------GGGGGG--------------------------AGGGGCCGTA-----------------------------------------------------------GCAAGAG a score=9775.0 s hg17.chr17_random 1854085 48 + 2618010 CTTG-----------TCC-AGATGGACAG------------------CTCAAACCTGGGGCACG--GAGGCTAGCA------TCGC s panTro1.chr19 81254773 48 + 82489036 CTTG-----------TCC-AGATGGACAG------------------CTCAAACCTGGGGCACG--GAGGCTAGCA------TCGC s mm5.chr11 120315624 53 + 121648857 CTGT-----------GCC-AAGTTGACAG------------------CTCAAGTCT-ATGCACA--AAGCCTAGAAGTTCAGTTTC s rn3.chr10 110051237 58 + 110733352 CTGGATAACGTGTGCGCC-AAGTTGACAG------------------CTTAAACCT-AGGCACG--AAACCTAGAA------GTTC s canFam1.chr18 30432747 68 + 66173745 CTTG-----------TCCAAAGTGGACTGTCTGGGGAGTGGCCCAGACTCAAACCC-ATACACATCAAGGCCAGCA------GCCC a score=-278.0 s hg17.chr17_random 1854133 27 + 2618010 --CTAGGCGC----------------TTTGAGAGCCAAGCTCCCC s panTro1.chr19 81254821 27 + 82489036 --CTAGGCGC----------------CTTGAGAGCCAAGCTCCCC s mm5.chr11 120315677 32 + 121648857 --CCAAACTCAGC-------TCCCAACTTGAGAT----GCTTCCC s canFam1.chr18 30432815 45 + 66173745 CACTGAGTTTTGCCTGACGATACATAATCAAAGGCCATGACCCCT a score=0.0 s hg17.chr17_random 1854160 3 + 2618010 AGG a score=573.0 s hg17.chr17_random 1854160 2 + 2618010 AG s panTro1.chr19 81254848 2 + 82489036 AG s mm5.chr11 120315709 2 + 121648857 AG a score=-128.0 s hg17.chr17_random 1854162 1 + 2618010 G s panTro1.chr19 81254850 1 + 82489036 G s mm5.chr11 120315907 1 + 121648857 T a score=1441.0 s hg17.chr17_random 1854163 14 + 2618010 CTGTTACAAAATCA s panTro1.chr19 81254851 14 + 82489036 CTGTTACAAAATCA s mm5.chr11 120315908 14 + 121648857 TTTTTAAATGTATG s canFam1.chr18 30432860 14 + 66173745 TCTTTAAAAAGTCC a score=12532.0 s hg17.chr17_random 1854177 151 + 2618010 --CTTTTCCCCAAGTGATAACAGCAAGTAACACTTTTACCTAAAAACCCAAAAACCCAAAATGGACAGCCCTCTGGGCCAGGGATACACTGTCAAAAGGACTGACTCTGAAGGAAGTCTCCCA-----GCCCTGGGTC----CCCTCC-------CCTTCCTTTCTGTC s panTro1.chr19 81254865 151 + 82489036 --CTTTCCCCCAAGTGATAACAGCAAGTAACACTTTTACCTAACAACCCAAAAACCCAAAATGGACAGCCCTCTGGGCCAGGGATACACTGTCAACAGGACTGACTCTGAAGGAAGTCTCCCA-----GCCCTGGGTC----CCCTCC-------CCTTCCTTTCTGTC s mm5.chr11 120315922 124 + 121648857 --CTTTTCTCCAAGTGATAA---TAAACATCACTCCT--------------AAAACAAAGAAAGACAGTTCTGTCATCTAGGGA-------------------GCCCCAGAAACCTTCTCCCATTTTCTTCTTGAGTCTTAGCTCTCA-------CTTCCCCTGCCTTC s rn3.chr10 110051676 134 + 110733352 --CTTTTCTCCAAGTGAGAA----------------TAACCAACTGTCCTAAAACCAAAGAAAGACAGTTCTGTCCTCTAGGGAGGCTCAGAAAACATCTCCCATTTT--------CCTCTTG-----AGTCTTAGCC----CTCTCCTCCTCTGCCTTCTTTTTTTTC s canFam1.chr18 30432874 100 + 66173745 TGTTTTTCAC----TGATAAGAGCAAATAACTCCTTC---------------CTCCAAAAAGAAGGAGTCCTCTGACCCAGGGAGTGACTGTCAGCAGGAGC--------------ATCCCAA-----GACAAGCGTC------------------------------- a score=29314.0 s hg17.chr17_random 1854328 92 + 2618010 CCTCAGGACCTTTGCGA-----AGGT----------------GGCAGAGGACCACCGGACAGGGAGGAAATTGGGAAGTTGGTGACAATTAACTCGTTTCAGAATTCTGGCC----A s panTro1.chr19 81255016 92 + 82489036 CCTCAGGACCTTTGCGA-----AGGT----------------GGCAGAGGACCACCGGACAGGGAGGAAATTGGGAAGTTGGTGACAAATAACTCGTTTCAGAATTCTGGCC----A s mm5.chr11 120316046 113 + 121648857 TCT-AGCACCTCTGAAA--TTTAGGTTGGATGTGATGCTGAGGGCAGAAAGCTACTGAACAGTGAGGATGCTGGGGACTTAGCGA-ACATGCTAGAGTTCAGAGTTTTGGCTGGTAA s rn3.chr10 110051933 109 + 110733352 CTTTAGGACGTCTGAAA--TTTAGGTTGGATGTGATGCTGGGGGCAGAAAGCCACTGAACAGTGAGAACACTGGGGATTTAGAG--AAACGCTATATTTCAGGGTTTTGGCT----A s canFam1.chr18 30432974 104 + 66173745 CTGGAGGACTTCTGCCAAATGTAGGG--------CCACTGGGGGCACCAAGCTACTGGACAATGAGGAGATTGGGGAGCTGGCAACAGATAA-GCGTTTCAGAAGTTCAGCT----A a score=0.0 s hg17.chr17_random 1854420 9 + 2618010 CATGAAAAA a score=-75.0 s hg17.chr17_random 1854420 1 + 2618010 C s panTro1.chr19 81255108 1 + 82489036 C s mm5.chr11 120316159 1 + 121648857 C s rn3.chr10 110052042 1 + 110733352 G a score=867.0 s hg17.chr17_random 1854421 8 + 2618010 ATGAAAAA s panTro1.chr19 81255109 8 + 82489036 GTGAAAAA s mm5.chr11 120316160 8 + 121648857 AGAATAAA a score=1713.0 s hg17.chr17_random 1854429 5 + 2618010 AAGGA s panTro1.chr19 81255117 5 + 82489036 AAGGA s mm5.chr11 120316168 5 + 121648857 AGGGA s canFam1.chr18 30433078 5 + 66173745 GAGAA a score=2791.0 s hg17.chr17_random 1854434 14 + 2618010 GAGAAGGAGGCTGG s panTro1.chr19 81255122 14 + 82489036 GAGAAGGAGGCTGG s canFam1.chr18 30433083 14 + 66173745 GGAAGGAAGACTGG a score=0.0 s hg17.chr17_random 1854448 13 + 2618010 GTCCTCTCCAAGA a score=673.0 s hg17.chr17_random 1854448 7 + 2618010 GTCCTCT s panTro1.chr19 81255136 7 + 82489036 GTCCTCT a score=1457.0 s hg17.chr17_random 1854455 6 + 2618010 CCAAGA s panTro1.chr19 81255143 6 + 82489036 CCAAGA s rn3.chr10 110052375 6 + 110733352 TCAAGA a score=14576.0 s hg17.chr17_random 1854461 265 + 2618010 CTGGTGCCCAGGTCTCCCC-TGAGTCAGGAAGCAGGTGATCCCTATGCCCCCTC------------TGTA--------------TCGCCCTCAGCCAGC---------NGGCAGGCCCTGAACAGCTG---------ACTGCCCTCATCTGGG--ATCTGCCATTGACCCCAAAAC-ACCCAC-----CCCCTCTGAGTAAAGGATGTCGGNC------CGGACCCTGTTTGTTGGCTAACGTGAGCGAGACCCCTCCTCAGC-GGCCAGTGAGGCCCC-----TTCCTCACATNTC----TTCATGGCAGCAGCACAGGCCTGG-----CTGTGGGGA s panTro1.chr19 81255149 262 + 82489036 CTGGTGCCCAGGTCTCCCC-TGAGTCAGGAAGCAGGTGATCCCTATGCCCCCTC------------TGTA--------------TCGCCCTCAGCCAGC----------GGCAGGCCCTGAACAGCTG---------ACTGCCCTCATCTGGG--ATCTGCCATTGACCCCAAAAC-ACCCAC-----CCCCTCTGAGTAAAGGATGTCGG-C------CGGACCCTGTTTGTTGGCTAACGTGAGCGAGACCCCTCCTCAGC-GGCCAGTGAGGCCCC-----TTCCTCACAT-TC----TTCATGGCAGCAGCACAGGCCTGG-----CTGTGGGGA s rn3.chr10 110052381 258 + 110733352 GAGGCAATTGGGTCCCTCT-CTAGGCAGAGTGAACATGGCTGACATCATCCCT--------------------------------------------------------GACA--TCCTGATCTTCTGATGCATAACACTTCTATCACCTAGGAAACCTGCA---GACTCAGGAGCTGCCTACGCCTGCCCATCCCAGTGAAAGACGCCGGTC------CTAACTCAATTTGTTGGCTGACCCA---GGGTGCCCTCTCCAGCTGGCCAGCAAGGGCCACACAGTACCACACAAGGCCAGGTTCAGAGC-----CTAAAGTCTAA-----ATGTTCTCA s canFam1.chr18 30433097 292 + 66173745 TTAGTGTCCAGGCCCCCCTGTGAGCAACGAAGGACGTGGCCCCTATGCTCCTCTGTCACCCGGAGACGTACCCCTGGCCCCCGCTCCCCATCAGCCAGCCAGGGCCGTTGGGACACCTCAGGCCCCCGTGGCT----CCTGGTCCCTCTGGTG--ATTGGCTGTGGAGCCAGTAAT-GCCCGC-----ACCCTGCAGGTAAAGGACGGGTGTCATCGTGCCGCTCCGACCTGCCAG-----------GTGAGCCCTGCTCCCCTGGTCTGTGTGGTGCC-----C----------GC----TCAAGGGG-----CGCAGGGCCAGGGAGCCTGCGGAGC a score=103712.0 s hg17.chr17_random 1854726 776 + 2618010 --CCGCCGTCTAAA--------------------AGGAGCAACAGTGCGTCTGTCCATCGCTGTGTCCAGGGCCTCTCGAGACCCCCANATGGGCGTGGGGGANGAGGTGAGTGCTGCGGGCCTCTGGGAGGGACGGGCATGAGC---CACAGGC-------------------CCGTCGGAGCCAGGCTGGCCTGTCACCCCTGTGAGGCAGAAGACGCTG-CCTGCCCCTTCCCCAGGAGGCTGCTCAGACCCTCAGGAGCCCAGCCTGCCCTGACTGTGATCCCAGGCCACTTCCTTCC-------------TCA----------------GCCTTCCCCCAGAGCACGCTAGGAG-GGGCCGCCAGGAGGGGCAAGTGCCCACAGTCCCCT---CAGAAGAGACTGCTGGT-----------------CCAG----------AGGCAGGGTACGTATAAATGTCAGC-ATTTATTTCCTGCTCAAGGACGTCAATGGGGCCCAGTCAATGGGCTGAGGGGCTGTTGTGCCACTGCCCACCCGGCTTGGACTCAGGGGTGGCCAGTGGGTCAGCTCCTGG--CTGGACCAGGCTGGGCTTCTGTGCAGGAGAAGCTGGCTGGAGCCTGGAGGATGATGGCCCCGGCG-----------TCAGGA--GTTTCGGCAAC----------------TGGACCCTTGAGC-----AGAGGCAAGCAGTACCCAGATTCTGTG-TCCAGCGGNCCGCCCTCAGCCGGGCTCCCTCCCA-GTGCCACAGATGCCCACAGTGCACAGATGCC-------------CGCCGGGCACTGCTGAAGCTGCTTCGTCACAGCCAATGGTGAGTGTCCAGGTGGG-GCTCCGTGGCTATGGCGGAACCAGGTCCTCCCCGTCCACTGTGCACTCGGTGCCGCC---- s panTro1.chr19 81255411 777 + 82489036 --CCGCCGTCTAAA--------------------AGGAGCAACAGTGCGTCTGTCCGTCGCTGTGTCCAGGGCCTCTCAAGACCCCCAGATGGGCGTGGGGGAGGAGGTGGGTGCTGCGGGCCTCTGGGAGGGACGGGCATGAGC---CACAGGC-------------------CTGTCGGAGCCAGGCTGGCCTGTCACCCCTGTGAGGCAGAAGACGCTG-CCTGCCCCTTCCCCAGGAGGCTGCTCAGACCCTCGGGAGCCCAGCCTGCCCTGACTGTGATCCCAGGCCACTTCCTTCC-------------TCA----------------GCCTTCCCCCAGAGCACGCTAGGAG-GGGTCGCCAGGAGGGGCAGGTGCCCACAGTCCCCT---CAGAAGAGACTGCTGGT-----------------CCAG----------AGGCAGGGTACGTATAAATGTCAGC-ATTTATTTCCTGCTCAAGGACGTCAATGGGGCCCAGTCAATGGGCTGAGGGGCTGTTGTGCCACTGCCCACCTGGCTTGGACTCAAGGGTGGCCAGTGGGTCAGCTCCTGG--CTGGACCAGGCTGGGCTTCTGTGCAGGCGAAGCTGGCTGGAGCCTGGAGGATGATGGCCCCGGCG-----------TCAGGAGGGTTTCGGCAAC----------------TGGACCCTTGAGC-----AGAGGCAAGCAGTACCCAGACTCTGTG-TCCAGCGG-CCGCCCTCAGCTGGGCTCCCTCCCA-GTGCCACAGATGCCCACAGTGCACAGATGCC-------------CGCCCGGCACTGCTGAAGCTGCTTCGTCACAGCCAATGGTGAGTGTCCAGGTGGG-GCTCCGTGGCTATGGCGGAACCAGGTCCTCCCCGTCCACTGTGCACTCGGTGCCGCC---- s mm5.chr11 120316789 761 + 121648857 --CTACTGCCCAGA--------------------GAGTGCAGCGGCCCCTCTGC------CTATGGTCTGGGCC-CTGAAGACCAC------AGTGTGGG-----------GCTTTGGGAGCCTCGAGGAGAGAAGAGACTAAGCTAACACTGACCTTCTTTCTTTGCATTTGGCCTTCTGAGCCACCCTAACCCGTCCCCTTTTT----CAGAAGGCTCAGACAAGGCCCAGCCTCA----GCTG------TCTTCCAGAACTCAAAGTCCCCCGA----------AGGCCAAGTCCTCCC-------------TCACAATGACTTGGTTTAGGCCTTCTCTCAGAGCATGCAGTGAGAAGGTAGCTTAACTGGTACAATCTTCCCTATACCCTGAACAGAAATGACT-CCGGTGAGCCTCCCGTGGGTAGCCAGGAAAGGTAACAGGCCAGGTGAAACCAGACATCCACTTTTTATTTTCTGCTGTAAGACCTGAAGGACACTCAGTTGATGGGTTGAAGGGCT---------------------------------------------------TCCTGGGATTAGTCCAGTCTGGGCTCTTGCATAGGAGAAGCTGGCTTGAGACTGAAAAACACCGGTGCTAGCAAGTCCTGGTGTTCAGGAACAGCTGGCTAAC----------------TAGATGTTTGAAT-----GGAGGCC--CAGTGACCAGGTTCCATGAACCAGGGG-CTGCC--CAGAGAGGCTCTTCACTGTGAGTCAATGCTGCCAGCCAAGCCAGCCTGCC-----AGAACCCATGGTAGATACCTCAGAGGCTTCTGGGTCATGGTCTATGTTGGGTGTCTGGACAGATATTCCATCGCTGTCATGACATCA--TCATCTT--TCCACGGAGATTCTGGT---GCT---- s rn3.chr10 110052642 721 + 110733352 --CTGCTGACAAGA--------------------GAGTGCAGCAGCCCCTCTGC------CTGTGGTCTGGGCC-CTGATGACCAC------AGTATGGG-----------GCTTTGGGTGCCTCTAGGAAAGGAGAGAATGAGTCAACATTGACCTTCTTTCTTTGCATTTGGCCTTCTGAGCCTCCCTATCCTGTCCCTTTTC-----CAGAAGGTTCTGACAAGGTCCAGCCTTG----GATG------TATTCCAGGACTCAAAGTAACCCAA----------AGGACAAATCCTCCC-------------TCA-CATGATTTGGTTTCAGCCTT-------------CTGTGAGAGGGCAGCTTAAGTGGTGCAATCTGCCATAGGCCCTGAAGAGAAATGACT-CCAGTGAGCCTTGTGTGGGTAGCCAGGGAAGGTAGCAGGCCAGGTGAAAACAAACATCCACCTTTTATTTTCCGCTGAGGGAC---------AGTTGGTTGATGGGTCAAAGGGCT---------------------------------------------------CCTTAGGATTAGTCCAGTCTGGGCCGTTGCATAGGAGAAGCTGGCTTGAGACTGAAGAATACCCGTGCTAGCACATCCTGGTGTTCAGGAGCAGCCGGCTAAC----------------TAGATGTTTGAAT-----GGAGGCC--CACTGACCAGGTTCCACGAACCAGTGG-CTGCCC-CAAGATGGCTCTTCACTC---------------CACCAAGCCAG----TC-----AGAACCCGTGGTAGACACCACGGAAGCTTCTG-GTTGTGGTCTGTGTTGGGTGTCTGGACAGATACTCCATTGCTGTCATGAGATCA--TCTTTTT--TTCATAGTGATTCTGGTGCTGAC---- s canFam1.chr18 30433389 737 + 66173745 CCACGCCTTCGAGCTGCTTGGGCTCAGGCACCCTGGGAACAGCAGCCCCGCCTG------CCATGGCCATGCCC-CTGGCG-CCCCAGCAGGAGTGTGGG-----------GTGCCGCAGG-----GGGCGAGACAAG----------CTCTGCC-------------------TC------ACCCTCCTCTCCTGCCGCCCA-------CATTGCCCACTG-CCTGCTTCTTCCCCTGGAGGCCGCCCACGGCCTGAGGGAGCCCGGCTCTGCCGC----------AGCCCCCGCCCCTCCCTGGGGCCCGTCGCCA----------------GCCTTTGCTCTGCTCACACTGGG---GGACGGCCCAGGGGCTGCTGCTGCCCATCGCCCCT---CGGTACAGACTGCTCA------------------CCAG----------AGCCGGGGTGCAAGTCAACACTGGC-GTTTA-TTCTGGCTCAAGGCT------------------------------GCTGCCAT----------------------CTCAGGGGCCCTCCTGCAGGTTGCTTTGGG--GTGGCCCCGTCTGAGCTCTTGAGCGGGAGAGGCTGGCTGGAGCGGGGCGGGTGACAGC-CCAATGGGCCCTGGTGGTCGTGGCCGGGTGAACGATGCTTGCTCGGAGGTCACGGGCCTGTGAGTACCAGAGGGGTGCTCGGTGCCCGGGCTCTGCGGCCCCGTGG-CTGTCC-CAGGCTGGGCCCTCCCCG---GTCAGGGCTGCC--CTGCGCCAGCCGGCCTCCCCGGGGCCCACAGCGGGCACCGCAGGAGCTGCT--GGCAGGGCTGACGG-GGGCGCCTGGTGGGC-ACTCCCTCACCGGGGCGGG--CG--CCCTACT--TCCCCTCAGCACTCTGGGCTCATCGTG a score=3976.0 s hg17.chr17_random 1855502 64 + 2618010 GGGCT---------CTG-CAGGCTCTTCCAGGCCACCC-GCGCCACCTC-CAGCCTGCGGAGACTCCGGAGGAAGC s panTro1.chr19 81256188 64 + 82489036 GGGCT---------CTG-CAGGCTCTTCCAGGCCACCC-GCGCCACCTC-CAGCCTGCGGAGACTCCGGAGGAAGC s mm5.chr11 120317550 45 + 121648857 GGCCT---------TTGACATG-------GGGCTACCTGGAACCACAACACAGTCT-------TTTC--------T s canFam1.chr18 30434126 65 + 66173745 GGGCTGCCCACCTGCGG-CGGGCCCCTGCCGGCCCCCG-GCACTGTCCC-CAGCCTGCTGAGGCCGC--------C a score=18576.0 s hg17.chr17_random 1855566 117 + 2618010 CTGCTTCCAAACACTGTGGCTACCAGCCCAGAGGC---TTCCCGGACGTGGGTGGGAGAGGCTGGTCCAGATTTCTGGCTCCTTCTCTGTGAGCTGGCACAGC--TCCCCAGGCAGGGCTCT s panTro1.chr19 81256252 117 + 82489036 CTGCTTCCAAACACTGTGGCTACCATCCCAGAGGC---TTCCCGGACGTGGGTGGGAGAGGCTGGTCCAGATTTCTGGCTCCTTCTCTGTGAGCTGGCACAGC--TCCTCAGGCAGGGCTCT s mm5.chr11 120317595 105 + 121648857 CGGTTTCGAATGGCTGTGGCCACTGG----GATGC----GCTTAGACATAGGT----GAGACTCATGCTAGTTGCCAGCT--TTCTCTACAAGCGATCACATCCATCCCCAAAGAGA---CT s rn3.chr10 110053390 105 + 110733352 CTGTTTCAGATGGCTGTGGCCATTGG----GATAC----GCTTAGACGCAGGT----GAGACCCATCCTACTTGCCAGCT--TTCTCTACAAGAGATCACAACCATCCCCAAAGAGA---CT s canFam1.chr18 30434191 104 + 66173745 CTGTGCGACCACACCACGAGTCCTGCTCTTGTTACAGCCACTCAGAGGTGGGC----AGGCTGGGTCCCAAGTCCCAGC---TCCTCTCTGAGCTGGCACGGA--CTCCCG---------CC a score=-13103.0 s hg17.chr17_random 1855683 95 + 2618010 CTTCCCAGGGTTCTGGGAGCTGCCTCTCTGAAC---CAGGA--GTGGTTCC--GGCTCCCCACGCCCCTCCCTCCCCTTGCCT--GGCCCAGCTACTCTCCT--GG s panTro1.chr19 81256369 95 + 82489036 CTTCCCAGGGTTCTGGGAGCTGCCTCTCTGAAC---CAGGA--GTGATTCC--GGCTCCCCACGCCCCTCCCTCCCCTTGCCT--GGCCCAGCTACTCTCCT--GG s mm5.chr11 120317700 73 + 121648857 CTTCTGTGGGATCAGG--------------------CAAGAAGGAGGCTCC--AGCTC----CAACCTTCCTTCCAACGGCCT--GGCCCTGGTGTTCTT-----G s rn3.chr10 110053495 72 + 110733352 C-TCTGTGGATTCAGT--------------------CAAGGAGGAAGCTCT--GGCTC----CAACATTCCTTCCAATGACCT--GGCTCTGGTGCTCTT-----G s canFam1.chr18 30434295 18 + 66173745 C-----------------------------------CAGCA-------------GCAC------------------------------CCTGCTGA---------- s danRer1.chrNA 228597510 101 + 390413307 CTACCCAGGGGTCCAC---CTCTCTCCCTTGACTTGAAGTA--TAGGCCCCAGGGTGCCCCCTGGCCCTCCACCTAGGGGCCTAAGACCCCAGCAAGCTACCCAGG a score=1396.0 s hg17.chr17_random 1855778 8 + 2618010 -GTTCGTCT s panTro1.chr19 81256464 8 + 82489036 -GTTCGTCT s mm5.chr11 120317773 8 + 121648857 -GCTCGCTT s rn3.chr10 110053567 8 + 110733352 -GTTTGCTT s danRer1.chrNA 228597611 6 + 390413307 GGTCCA--- a score=-73.0 s hg17.chr17_random 1855778 45 + 2618010 -GTTCGTCTCCTCTGGAAGTCATTCCTCTTTCAGCTTGCCTTA-----CCC s danRer1.chrNA 228597611 37 + 390413307 GGTCCACCTC--------------TCTCCCTGGACTTGCAGTAGAGGCCCC a score=4282.0 s hg17.chr17_random 1855786 31 + 2618010 CCTCTGGAAGTCATTCCTCTTTCAGCTTGCC s panTro1.chr19 81256472 31 + 82489036 CCTCTGGAAGTCATTCCTCTTTCAGCTTGCC s mm5.chr11 120317795 31 + 121648857 CCTCAGGAAGTTGCCTGATTTCTAACTTATA s danRer1.chrNA 228597617 20 + 390413307 -----------CCTCTCTCCCTGGACTTGCA a score=600.0 s hg17.chr17_random 1855817 6 + 2618010 TTA-----CCC s panTro1.chr19 81256503 6 + 82489036 TTA-----CCC s mm5.chr11 120317826 7 + 121648857 TCA----CCCC s rn3.chr10 110054045 7 + 110733352 TTA----TCCC s danRer1.chrNA 228597637 11 + 390413307 GTAGAGGCCCC a score=31330.0 s hg17.chr17_random 1855823 232 + 2618010 AGCCTGACTGTGGTCTCCAGACACTAATGGAGGTACTGGGTGCCTCGCAAATGCTT-CTAGCCTCCATGTCCCCAGCTGCAAAATGGGTCACAACAGCAGCTGCTTTAAAGTTTTCCCTTATGATGTTCCAGTGACCAGCACTGAGCNCCCAGGAGCGCTGGGAAATGGTGAGAGAGAGTGAGTTGGG--------------------------------------------GATTGG-----CCTAG--GTGAGGNCTCTCCCCTGCGT-CTGCTCAG----GGCCT---C s panTro1.chr19 81256509 230 + 82489036 AGCCTGAGTGTGGTCTCCAGACACTAATGGAGGTACTGGGTGCCTCACAAATGCTT-CTAGCCTCCATGTCCCCAGCTGCAAAATGGGTCACAACAGCAGCTGCTTTAAAGTTTTCCCTTATGATGTTCCAGTGACCAGCACTGAGC-CCCAGGAGCGCTGGGAAATGGTGAGAGAGAGTGAGTTGGG--------------------------------------------GATTGG-----CCTAG--GTGAGG-CTCTCCCCTGCGT-CTGCTCAG----GGCCT---C s mm5.chr11 120317833 212 + 121648857 AGCTAAAATGCTATCTCAAGAC-------------CAGCTCACCTCCGAAGTTCAT--TAGCTTTAATGTTCCCATCTGCACAATGGATTACAACAGTACCTGTTCCAAAATGTCCCCATTTGGTA---CAGTGACTAGCACCCAGC-CCAATAATGGCCAGGAGACTGAAAAACAGGGAGACAGGGG--------------------------------------------GACTGAGAGTCACTAG---------CCACCCCCTTCCT--TGTTCAG----GGCCT--CC s rn3.chr10 110054052 220 + 110733352 AGC-TAAATGCTATCTCAAGACGCTGACAC-----CGGCCCGCCTCTGAAGTCCAT-TTAGCTTTAATGTTCCCATCTGCAAAATGGATTATAACCGTATCTGCTCCAGAAAGTCCCCATTTGGTA---TGGTGACTAGCACCAAGC-CCAGCAAAGGCCAGGAGACTGAGAAACAGGGAGACAGGAA--------------------------------------------GACTGAGAGTCTTTAG---------CCACACTCTTCCT--TGCTCAG----GACCT--CC s canFam1.chr18 30434313 267 + 66173745 CACCCGAATGTGGTCTCCGGGCACGT---------GGGGCTGCCTCCAAAACCCTt----gccttgctgtccccacctataaagtgggtcacaacagcatctgcttcaaaggcttCTCACAT--TA---CAGTGGGTAGCACGGAG--CCAGGGAGGGCCAGGACATGGGGAGAGACAGAGGGGGGGTACAGACAGAGACGAGATGTGCACAGCAGGAGAGAGGCAGACAGCGGCAGGGAGCTGCCGGCGGGGAGG-TGCTCGCCTGGGTCCTGCTCAG----GCCTTGATC s danRer1.chrNA 228597648 182 + 390413307 ------AGGGTGCCCCTTGGCCCTCCACCTAGGGGCCTAAGACCCCAGCAAGCTACACAGGGGTCCATATATC--TCGGTGGACTGG-------CAGTATAGGCCCCAGGGTGCCCCCTGGCCCTC---CAACTAGGGGCGCTGACC-CCAGCAAGCTAC---------------------CCAGGGG-------------------------------------------------------TCCAC---------CTCTCTCCCTGGA--CTTTCAGTAGAGGCCC---- a score=-344.0 s hg17.chr17_random 1856055 82 + 2618010 TGCCCTACTGTCCTGCCCTTGTCCCTCTGAGCCCAGT---CTGGAAGTCGGGGAGTGACCTCTCCCGTTGTACTTCATCTCCCCT s panTro1.chr19 81256739 82 + 82489036 TGCCCTACTGTCCTGCCCCTGTCCCTCTGAGCCCAGT---CTGGAAGTCGGGGAGCGACCTCTCCCGTTGTACTTCATCTCCCCT s mm5.chr11 120318045 63 + 121648857 TGCCCCTAGGTCCTTCCTCTTTGCCTCC---CTCAGTGTGCTAGATATCCAAGAGCAGAATCG-------------------TCT s rn3.chr10 110054272 29 + 110733352 TGCCCC---------------TCCATCCGAG----------------------AGCAGAATCG-------------------TCT s canFam1.chr18 30434580 50 + 66173745 CGCTCGTCTTCCCCCTCCTCCCCTTGCTGAG---------CCAGAAATCCAGGAGT--------------------------GCT a score=6963.0 s hg17.chr17_random 1856137 67 + 2618010 GAG-CCCGCGGCTTCCCTCCTGC-TCGCTACTT-GACACTTTGGTTCACCTGAGTTTCCCTCGCAGAGCC s panTro1.chr19 81256821 67 + 82489036 GAG-CCCGCGGCTTCCCTCCTGC-TCGCTACGT-GACACTTTGGTTCACCTGAGTTTCCCTCGCAGAGCC s mm5.chr11 120318108 55 + 121648857 GAG-CCCCGAACACCCCTCTTGCTTCCCTATGT------CTTAGTTCACCTTGGT--------CAGCTGT s rn3.chr10 110054301 56 + 110733352 GAGCCCCCCGACCTCCCTCTTCCTTCCCTATGT------CTTAGTTCACCTTGGT--------CAGCTGT s canFam1.chr18 30434630 60 + 66173745 CAG-TTGGTTGCCTCCCTCCGGC-TTGCTACCCGGGGATCTGGGTTCACCTGGGT--------CCCCTCA s galGal2.chr18 4059289 64 - 8919268 GAG-CTC-TGGTTCCTGGCCCGG-TCAGTGCCT---GTCCTCGCTGCGTCCCATCTCCCGCTGCTGCTGC a score=761.0 s hg17.chr17_random 1856204 46 + 2618010 TGGAGCTGGTGGCCAG-----------------AGAGCAGAGGTGGGTGGGCTGCCACTG-----TGG s panTro1.chr19 81256888 46 + 82489036 TGGAGCTGGTGGCCAG-----------------AGAGCAGAGGTGGGTGGGCTGCCACTG-----TGG s mm5.chr11 120318163 48 + 121648857 AGGTGCTCTCAGCCAG-----------------AGAGAAGACATGGGTGGGCCATCACTG---GCCAG s rn3.chr10 110054357 44 + 110733352 AGGTGCTCTCAGCCAG-----------------AGAGAGGA----GATGGGCCATCGCTG---GCCAG s canFam1.chr18 30434690 49 + 66173745 CGGAGCCGCAGCCCCT-----------------GGAGAG--CGCGGGTGGGCAGCGGCTTCCTGCAGA s galGal2.chr18 4059353 33 - 8919268 TGGAGCCG--------------------------GGGCAGA----GCTGGGCCTCAGATG-----TGG s fr1.chrUn 257732946 61 - 349519338 TGGACCTGGTCTCCAGTCAGCTTTACAGCCCTCAGAAATGA----AGCGGCTTTTAGATA---GCGGA a score=1308591.0 s hg17.chr17_random 1856250 918 + 2618010 GCTACAG-GCTGGGCACGAAGCGAATCCNTCTGGGAGTAGGCGAGGTCAACGACGTACAGGAGCAGGTTGACGTAGGTGAAGATGGCCACCACCAGCTGGCTGTCCCAGGGACAGCTGCCCCGAGCACAGTTGGGGGGCCGTTTGGGCTCACCGTACTTGGGATCGAAACANAAGACTGGCCAGATCACGGCGGCGCTGAGGTACAGGAGCACAGCCAGGAAGGTGTACACCACCACCAGCCGGTCAAAGGGGCAGCCCANGCCCCNCTGTGTGGCCCATCACACTCAGGGCCACCACGGCCACTGTGGCCAGGAAGCACAGGCTGTAGACGGCCACGCACCACTGGGTGGCCACGTAGCGCCCGTAGCGGCTGTCATGGACCAGCGCCCCGAAGATGATGCAGGCCACGAAGGCCTGGACGATCTTGANGGAGCCCCGACACCGTGGCCATATAGCTGCTCACCTGGCCGGGCCGGGCCCGCGTCAGGGCCACCTCCACAGCGTAGGCCAGGAAGAGGAGCCCGGCGAAGACACTGGCTGCCAGGCGGAAGTCCCTGGCAGCACAGCCGGCGGGCTCGGGGGAACACTCCCGCCGNGGCAAAGTACAGCGGATACAGGACCGCAGCCGTCGCGCATAGCAGGGTGGCCAGCATGGCGAAGGCGGCGGTGAAGTTGCCCCAGGAGAGCCGCAGGCAGCCGTGGAGCCGTGTGAACTCACAGGCCACCACCAGCGCAGAGACGGCGAAGCAGAAGCCCCAGGCGGCCATGCAGAAGGTGCCCTGGACGCCCGCAAAGCCACCCCGGTGGGCCACCAGGCTGAAGGTAGTGCAGCCAAAGGCCAGCTGCAGCACGCGGGCTGTGCCCACAGGGGATGTCACGGCGCCCAGGTGCAGGTACGCACCCCCAGGGGGCTCCATG s panTro1.chr19 81256934 914 + 82489036 GCTACAG-GCTGGGCACGAAGCGAATCC-TCTGGGAGTAGGCGAGGTCAACGACGTACAGGAGCAGGTTGACGTAGGTGAAGATGGCCACCACCAGCTGGCTGTCCCAGGGACAGCTGCCCCGAGCACAGTTGGGGGGCCGTTTGGGTTCACCGTACTTGGGATCGAAACAGAAGACTGGCCAGATCACGGCAGCGCTGAGGTACAGGAGCACAGCCAGGAAGGTGTACACCACCACCAGCCGGTCGAAGGGGCAGCCCAGGCCCC-CTGTGTGGCCCATCACACTCAGGGCCACCACGGCCACTGTGGCCAGGAAGCACAGGCTGTAGACGGCCACACACCACTGGGTGGCCACGTAGCGCCCGTAGCGGCTGTCATGGACCAGCGCCCCGAAGATGATGCAGGCCACGAAGGCCTGGACGATCTTGA-GGAGCCCCGACACCGTGGCCATATAGCTGCTCACCTGGCCGGGCCGGGCCCGCGTCAGGGCCACCTCCACAGCGTAGGCCAGGAAGAGGAGCCCGGCGAAGACACTGGCTGCCAGGCGGAAGTCCCTGGCAGCACAGCCGGCAGGCTCAGGGGGACACTCCCGCCG-GGCGAAGTACAGCGGATACAGGACCGCAGCCGTCGCGCACAGCAGGGTGGCCAGCATGGCGAAGGCGGCAGTGAAGTTGCCCCAGGAGAGCCGCAGGCAGCCGTGGAGCCGTGTGAACTCACAGGCCACCACCAGCGCAGAGACGGCGAAGCAGAAGCCCCAGGCGGCCATGCAGAAGGTGCCCTGGACGCCCGCAAAGCCACCCCGGTGGGCCACCAGGCTGAAGGTAGTGCAGCCAAAGGCCAGCTGCAGCACGCGGGCTGTGCCCACGGGGGACGTCACGGCGCCCAGGTGCAGGTACGCACCCCCAGGGGGCTCCATG s mm5.chr11 120318211 914 + 121648857 GCTACAG-GGTGGGCACGAAGCGGATCC-TCTGGGAATAAGCGAGGTCAACAATGTAAAGGAGCAGGTTGACGTAGGTGAAAATAGCTACCACCAATTGGCTGTCCCAGGGGCAGCTGCCTCGCAGGCAGTCCGCGGGCCGCCCTGGCTCCCCGTACTTGGGGTCAAAACAGAAGACTGGCCAGATGACTGCAGCGCTGAGGTATAGGAGCACAGCCAGGAACGTATACACTATCACTAGGCGGTCAAACGGGCACCCCAGGCCTG-CCGTGTGTCCCATCACGCTTAGGACCACCACAGCCACTGTGGCCATGAAGCACAGGCTGTAGACAGCCACACACCACTGTGTGGCCACGTAGCGCCCGTAGCGACTCTCGTGGACAAGTGCTCCAAAGATGATGCAGGCCACAAAGGCCTGGACGATCTTAA-GGAGCCCAGACACTGTAGCCATATAGCTGGCTACCTGACCTGGCCGAGCCCGAGTCAGGGCCACTTCAGCCGCATAGGCCAGGAAGAGGAGTCCTGCGAAGACGCTGGCTGCCAGGCGGAAGTTTCGTACCATGCATCCGGCAGGCTCAGGTGGGCACTCCAGTCG-GGTGAAGTACAGAGGGTAGATGACAGCGGCCGTGGCACACAGCAGGGTCGCCAACATGGCGAAGGCTGCTGTGAAGTTGCCCCAGGAAAGGCGCAGGCAGCTGTGAAGCTTTGTGAACTCACAGGCTACCACCAAGACTGAGAAGGCAAAACAGAAGCCCCAAGCAGCCATGCAGAAAGTGCCCTGGACACCCCCAAAACCACCTCGGTGAGCAACCAAACTGAAAGTGGTACAGCCAAAGGCCAGCTGCAGCATTCGGGCTGTACCCACCGGCGAGGTCACAGCGCCTAAGTGCAGGTATGCACCCCCTGGGGGCTCCATG s rn3.chr10 110054401 914 + 110733352 GCTACAG-GGTGGGCACGAAGCGGATCC-TCTGGGAGTAAGCGAGGTCTACGATGTAAAGGAGCAGGTTGACGTAGGTGAAAATAGCTACCACCAACTGGCTGTCCCAGGGGCAGCTGCCTCGGGGGCAGTCCGAGGGCCGCCCTGGCTCCCCGTACTTGGGGTCGAAACAGAAGACTGGCCAAATGACTGCGGCACTGAGGTATAGGAGCACAGCCAGGAAGGTATACACTACCACTAGGCGGTCAAACGGGCACCCCAGGCCCC-CTGTGTGTCCCATCACACTTAGGACCACCACAGCCACTGTGGCCATGAAGCACAGGCTGTAGACAGCCACACACCACTGCGTGGCCACGTAGCGCCCGTAGCGACTCTCGTGGACAAGTGCTCCAAAGATGATGCAAGCCACAAAGGCCTGGACGATCTTAA-GCAGCCCGGACACTGTAGCCATATAGCTGGCTACCTGACCTGGCCGGGCCCGAGTCAGGGCAACTTCAGCAGCATAGGCCAGAAAGAGGAGTCCTGCGAAGACGCTGGCTGCCAGGCGGAAGTTTCGGACCATACATCCGGCAGGCTCAGGTGGGCACTCCAGTCG-GGTGAAGTACAGAGGGTAGATGACAGCGGCTGTGGCACACAGCAGGGTCGCCAACATGGCGAAGGCTGCTGTGAAGTTGCCCCAGGAAAGGCGCAGGCAGCTGTGGAGCCTTGTGAACTCACAGGCTACCACCAGGACCGAGAAGGCAAAACAGAAGCCCCAAGCAGCCATGCAGAAAGTGCCCTGCACGCCCCCAAAACCACCTCGGTGAGCAACCAAACTGAAAGTGGTACAGCCAAAGGCCAGTTGCAGCATTCGGGCTGTACCCACTGGTGAGGTCACAGCGCCTAAGTGCAGGTATGCACCCCCCGGGGGCTCCATG s canFam1.chr18 30434739 914 + 66173745 GCTACAG-GGTGGGCACGAAGCGGATCC-TCTGGGAGTAGGCGAGGTCGGCAATGTAGAGGAGCAGGTTGACGTAGGTGAAGGTGGCCACGACCAGTTGGCTGTCCCAGGAGCAGCTGCCTCTTGGGCAGTCGGGGGGCCGCCCAGGCTCACCATACTTGGGGTCGAAACAGAAGACAGGCCAGATGACAGCGGCGCTGAGGTAGAGAAGCACGGCCAGGAAGGTGTACACCACCACCAGACGGTCGAAGGGGCAGCCCAGGCCCC-CCGTGTGGCCCGTCACGCTCAGGGCCACCACGGCCACCGTGGCCAGGAAGCACAGGCTGTAGACAGCCACACACCACTGGGTGGCCACGTAGCGCCCGTAGCGGCTGTCGTAGACCAGTGCCCCAAAGATGATGCAGGCCACGAAGGCCTGGACGATCTTGA-GGAGCCCTGAGACCGTGGCCATGTAGCTGGTCACCTGGCCTGGCCGGGCCCGGGTCAGGGCCACCTCCGCGGCGTAGGCCAGGAAGAGCAGCCCGGCGAAGACGCTGGCCGCCAGGCCGAAGTCCCTGGCTGTGCAGCCCGCGGGCTCGGGCGGGCACTCCAGCCG-GGTGAAATAGAGCGGGTAGATGACCGCGGCCGTGGCCGACAGTAGCGTGGCCAGCATGGCGAAAGCTGCTGTGAAGTTGCCCCAGGACAGGTGCAGGCAGCTGTGGAGGCGGGTGAACTCACAGGCCACCACGAGGCCCGACAGGGCAAAGCAGAAGCCCCAGGCAGCCATGCAGAAGGTGCCCTGCACGCCCGCGAAGCCCCCGCGGTGGGCCACCAGGCTGAAGGTGGTGCAGCCGAAGGCCAGCTGCAGCGCCCGGGCCGTGCCCACGGGGGACGCCACGGCGCCCAGGTGCAGGTACCCGCCCCCGGGGGGCTCCATG s galGal2.chr18 4059386 897 - 8919268 GAT------------ACGAAGCGGATGC-GCTGGGAGTACGCCAGGTCTACCACGTAGAGCAGCAGGTTGACGTAGGTGAAGATGGCCACCACCAGCTGGCTGTCCCAGGGGCACCTGCCCTTGGCACAGGCGCTGGGGCGCTGCGGGGAGCCGTACTTGCTGTCAAAGCAGAACACCGGCCAGATGACGGCCGCGCTCACGTACAGCAGGACGGCCCCGAAAGTGTAGACGACCACAGAGCGCTCGAAGGGGAAGCACAGCTGGG-CGGTCTTACCAGTGACACTGAAGGCGACCACCACCACCGTGACCATAAAGCAGAAGCTGTAGACGGCCACGCACCACTGTGTGGCCACGTATTTGCTATACTGGCTGTCGTTCACCAGCGCCCCAAAGATGATGCAAGCCACAAAGGCCTGTACGATCTTCA-GGAGCCCAGAGACAGTGGCCATGTAGCTGGTGACCTGTCCTGGTTTGGCTCTGGTCAAGAACACCTCCGCGCCATACACAACGAACACGAGGCCGGCAAAGACGCTGGCCGCTATGCGGAAGTCTCTCACCTCGCAGGTGATGGGGT------AGCAGCCGAGCTG-CACGAAGTAGAGCGGGTAGATCACCGCCGCTGTGACCGACATGAGCGTGGCGAGCATGGCGAACGCAGCTGTGAAGTTTCCCCAGGAGATGCTCAGACAGCTGTGCAGGTGCGTGAACTCGCAGGTAATGATAAAGACAGTGACAGCAAAGCAGAAGGTCCAGACGAACATGCAGAAAGTGCCGTATGCTGCGCTGAATCCCCCCTGGTGGGCCACCAGGCTGAACGTGGTGCATCCAAACATCATCTGCAGCAAACGAACTATTCCCACTGGAGATGTCACAGCCGCCGTGTTCAGATACGGCCCTCCTGTGCTCTCCATC s fr1.chrUn 257733007 901 - 349519338 GCT--------GGAGACGAAACGAATCC-TCTGGGAGTAAACCAGATCAGCAAAATACAAGATCAGGTTCACGTTGCTGAAAACCGCCACCACCAGTTTACTGTCCCAGGGACAGTCTCCTCGGGGACAGTCCTCCGGTCGAGTCGAGTTGCCGTATTTCCTGTCAAAGCTGAAGATGGGCCAAATCAGCGCCGTGCTGAGGTAGAGGATCACAGCGAAGAAGGTGTAGACAACCACGAACCGGTCGAATGGGAAGCGCAGGGCGG-CGGTCCTTCCAGAGACGGTCACCACGATAACCACCACGGTGAGGCAGAAGCACAGGCTGTACACCACCACGCAGTACTGGGTGCCCACATAGAGGCCATACTCGCTATCGTTGGCCAGGGCCCCGAAAATAATGCAGGCCACAAAACCCTGGACCACTTTGA-GGAGGCCGGAGACAGTGGCCATGTATCCCACCACCGCCCCCGGTTTGGCCCTGGTGAGGAAGACCTCGGCGCCGTAGGGGAAGCAGCAGACGCAGGAGCAGACGGTCACGGCGATGCGGTAGGCCTGAACGTCACAGCC------CTCCTCGGGACACTCCGTCTG-GAGAAAGTAAACGGGGTAGACCACGGAGGCGGTGACCCACATGAGCGTGGCCAGCATGGCGAAGGCCACGGTGAAGTTGTCCCAGGATATCGGCATGCACGCGTGCAGCCGCGTGATGTCCAAGGTGAAGACGACCAATGTGACAGCAAAGCAGAAGCTCCACACGAACATGCAGAAGGTGCCATAGTCGGCGCTGTACCCGGCGCTGTGGGACACGAGAGCCATGATGGTGCTGCCAAGGAGCAGCTGGCACATCCGGGCCACCCCTAGAGGGGACAGGACCGCTTCCTTTTTCAGGTAGTGTTCTCCACGGGCATCCATG s danRer1.chrUn 244480789 909 - 367113659 GCTGCAGAACTCAACACGAATCGTATTC-TTTGCGAGTAGACCAGATCGGTGAAGTACAGCACCAGGTTGGCACAAGTAAACACTGCGATCACCAGCTTGCTGTCCCATGGACACTTTCCTTTAGGACAGTCGTCCGGTCTCCCCGGGGCTCCATACTTCTTATCGAAACTGAAAACCGGCCAGATCACGGCAGCACTCAAATACAGCAGCACTGCCAAGAAGGTGTAGACGACCACAAATCTGTCGAAAGGGAAACGCAGGGAAG-ACGTTCTGCCTGAGACGGTGAGCGCCACCACCACTACGGTCACGGCGAAGCACAAGCTGTAGACCACCACGCAATACTGCGTAGGGATGTGCCGGTTGTATTGGCTGTCATTGTGGAGAGCACCGAAGATGATGCAGGCGATGAAGGCTTGGACTACCTTAA-GCAGGCCTGAAACGGTGGCCATATATCCAACCACATGTCCCGGTTTGGCCCGTGTGATGAACACCTCAGCTCCGTAGGCGAAGCAGCAGACGCTGGAGCAGACGGTGACGGCGATACGGTAGTTTCGCACCTCGCAGCC------TTGCGACGGGCAGTCAGACCT-CAGGAAGTACACCGGGTACACAACTGAAGCCGTGACGTACATGAGAGTCGCCAGCATGGCGAAGGCCACAGTGAAGTTATCCCAGGAGATAGGCATGCACCCATGTAACCTGGTGACATCCAGGGTAAAGACTAGAAGAGTGACCGCAAAGCAGAAGCACCAGACGAACATGCAGAAAGTGCCATAGGTTGCGCTGAAGCCTGCACTGTGGGCTACTAGAGCCATAGTGGTGCAGCCTAGGAGCAGCTGGCACATTCGGGCAGCGCCAAGGCATGACAGCACCGCCGACTTGTTCAGATAGTGGCCTCCCTGGGGGTCCATG a score=-4547.0 s hg17.chr17_random 1857168 92 + 2618010 GTGCTGCCCATCTGGCC--AGCCACGTTTC-------------CAGCTCACACAGTCCCCCAAGGCCCTGGGGNTCCCTGCTGGG---------------------------------CCAAGGCCCCTCAGTCCTCT---GC s panTro1.chr19 81257848 91 + 82489036 GTGCTGCCCATCTGGCC--AGCCACGTTTC-------------CAGCTCACACAGTCCCCCAAGGCCCTGGGG-TCCCTGCTGGG---------------------------------CCAAGGCCCCTCAGTCCTCT---GC s mm5.chr11 120319125 90 + 121648857 GTGCTGCCCATCTGGCT--CGCTACCTCCC-------------AGCCTCACCCTGGGCCCAGCTACCCTGGGG--GTCTGCCCAG---------------------------------CTGAGAGACCTCTGTCTTCC---GC s rn3.chr10 110055315 90 + 110733352 GTGCTGCCCATCAGGCT--CTCTACTTCCC-------------AGCCTCACCCTGTGCCCAGCTACCCTGGGG--GTCTGCCCAG---------------------------------CTGAGAGACCTCTATCTTCC---GC s canFam1.chr18 30435653 52 + 66173745 GCGCTGCCCATCCGGCT------------------------------------------------CCCTGGCG----------GG---------------------------------CCGCGGGCCCTGTGCCTCCTGGGGT s galGal2.chr18 4060283 138 - 8919268 ATCTTTCCAGTCCTGCA--GATAATGCACTTAAAAAAAAAAAAAAACCCAAAACTTCCTTTCAGGCTTTTGCCCTTCGTCCTGAGTCACACCTGGCACCGGATCAGCGGACAGCAGCTCCAATCCCCGCCTGCCTCTG---CC s fr1.chrUn 257733908 89 - 349519338 GCTGAGAAAGTCCCTCCGCAAGCACCTGTC-------------TTCTTTGGTGGAGTCCCTCCGGTCTTGACG--TCCTCCTGGA---------------------------------CCACG---CTGCAGACCTCA---GC a score=45348.0 s hg17.chr17_random 1857260 95 + 2618010 GGTAGTGGCAGGTGCCTGCAGCCTGCAGAGGCAGTGACGACG----------GTGACATTGCAGCAGGGCAGCCTCTCTGCTGTCTATGTGAGGCGG----------CTCCCCCC s panTro1.chr19 81257939 96 + 82489036 GGTAGTGGCAGGTGCCTGCAGCCTGCAGAGGCAGTGACGACG----------GTGACATTGCAGCAGGGCAGCCTCTCTGCTGCCTATGTGAGGCGG---------CCCCCCCCC s mm5.chr11 120319215 97 + 121648857 GGCAACAGCAGGTGCTGGCAGTCTGCAATGGCAGTGTTAACA----------GTGACATTGCAGCAGAACAGCCTCTCTGCTGCCTGGGTTGGGAGC--------CCTCCCCCCC s rn3.chr10 110055405 97 + 110733352 GGCAACAGCAGGTGCTGGCAGTCTGCAATGGCAGTGTTAACA----------GTGACATTGCAGCAGAACAGCTTCTCCGCTGCCTGTGTTGGGAGC--------CCTCCCCCCC s canFam1.chr18 30435705 108 + 66173745 GGCTGTGACAGGTGCCGGGCGCCTGCAGTAGCGATGACGCCGC------CGCTTGACATTGCAGCCGGGCAGCCTCTCCGC-GCCTGTggggcgcaggcccccccccgccccccc s galGal2.chr18 4060421 97 - 8919268 GGTATCCGTAGGTGCTG------TGCTGACGCTGGGCGTGCGTCTCTGGCACGGAGCGCTGCTGCAGGGAGG--TCACTGCTGGCTCTGCCCACCGG--------CTGCGCTC-- a score=107179.0 s hg17.chr17_random 1857355 324 + 2618010 AGCGCTATAAATAG------ACAGCCGTGATCAGAGCCCCGGAATAGCAGCTT-GCGTGCCTGTCCCCATCTTAGAGAGACATCTGACCCCTG-GTCCCCTGTGGAGCCCCTGCCGGGACCAT---TAACCCATTGGCTGCTGGCACCACCCCCNACCTCC-GCCTCCCGCGCACCTGCATCT--------GTCAATCCGGTCAGT-TGGTTTCACGC-------TTG--TGGGGGAGGGGGAGGGAGAAGGAGGGGAGCAAAGAGCATGAG--GGTCCCCACGGGGTAACCCCAGC----TCCAGCAGCCTCCAGGGCCAGCTGTGCG-GGGGAGGGGTGTAGGAGGCAGGAG--GCGGCAG s panTro1.chr19 81258035 323 + 82489036 AGCGCTATAAATAG------ACAGCCGTGATCAGAGCCCCGGAATAGCAGCCT-GCGTGCCTGTCCCCATCTTAGAGAGACATCTGACCCCTG-GTCCCCTGTGGAGCCCCTGCCGGGACCAT---TAACCCATTGGCTGCTGGCACCACCCCC-ACCTCC-GCCTCCCGCGCACCTGCATCT--------GTCAATCCGGTCAGT-TGGTTTCACGC-------TTG--TGGGGGAGGGGGAGGGAGAAGGAGGGGAGCAAAGAGCATGAG--GGTCCCCACGGGGTAACCCCAGC----TCCAGCAGCCTCCAGGGCCAGCTGTGCG-GGGGAGGGGTGTAGGAGGCAGGAG--GCGGCAG s mm5.chr11 120319312 312 + 121648857 AGCGCTATAAATAA------ACAGAC-TGATCAGAGCCCCGGAATAGCAACCT-GCAAGCTAGTTCCCATTCTA-AGGGACATTTGACCCCTGCATCCCACAAAAAGCCCCTTTCGGGACTACAAGTTAGCCTCTGGATGCTAG----ACGCCC-ACCTCCTGCCTCTGACGCACCTGCATCT--------GTCAGTCCGGTCAGTATAG----------------TG--TGGGGGAGGGGCTGGGCGA-------GAACAGAGAGTAGGGGCTCGCCCTCTAGGGATCACCGCTGAGGCGTTGAGCAACCTCTGGGTTTAG-TAGGTT-AGGGAGGAGGAGAAACAGCAGGGG--GTTCCAG s rn3.chr10 110055502 315 + 110733352 AGCGCTATAAATAA------ACAGAC-TGATCAGAGCCCCGGAATAGCAGCCT-GCATGCTATTTCCCATTCTG-AGGGACATCTGACTCCTGCATCCCACAAAGAGCCCCTGTCAGGACTACAAGTTAGCCTCTGGATACTAG----ACGCCC-ACCTCCTGCCTCTGACGCACCTGCATCT--------GTCAGTCCGATCAGT-AAA---------------TTG--TGGGGGAGGGGCTGGGCGA-------GAACAGAGAGCAGGGGCTTGCCCTCTGGGGATCACCGCTGAGGCTTTGAGCAACCTCTGGGTTTAG-TATGTTAGGGGAAGGGTACAGGGAGGTGGAGAAACAGCGG s canFam1.chr18 30435813 307 + 66173745 cACACTATAAATAGGTGCTCACGATT-CAATTGGAGCCCCGGAATAGCAGCTGAGAGCGTCTGTCCCCGGGCCGGAGGGTCATCTGACCCCTGCGCCCGCCGCCAA-CCCCCGCCAGGACCGT---TAACCCCTTGGCTGCTGG---------C-GCCTCCCGCCTCCAAAGCACCTGCGTCTAGCCCAGCGTCTGTCTGGTCTGT-CTGCGGTAGGCTGCCCCATTGCCTGCggggaggggagggaga------tgggcagggggaggggg--agACCT---------ACGCC-------TCCAGCCCCCTCC-------------TT-GAGGAGGGAGGGGGATCTCAGGCC--CCTGCTG a score=2713.0 s hg17.chr17_random 1857679 14 + 2618010 CCTGGGCTCCTGGG s panTro1.chr19 81258358 14 + 82489036 CCCGGGCTCCTGGG s rn3.chr10 110055829 13 + 110733352 -CCGGGACGGGGGC s canFam1.chr18 30436120 14 + 66173745 CCCAGTCCCCTGGG a score=3039.0 s hg17.chr17_random 1857693 25 + 2618010 GCTCGCGGGGGTCGGGGATNGGTTT s panTro1.chr19 81258372 23 + 82489036 GCTCGCGGGGGTCGGGGGTGG--TT s rn3.chr10 110055842 24 + 110733352 GGTGGCGGGGGT-GGGGGTAGGTCT a score=123372.0 s hg17.chr17_random 1857718 1429 + 2618010 NCCCCAACATTTATCTCACCCCTTCTGGATGGCCGCGTGGTTCAGAGCCTGCATGGGCTTCAGGATCCTGCTGTCATTGCCTGGGGTTCACAGGGTTCTGCTGCGGCCAGAGGAGCAGAGCATGGAGACCGTGGCCTCTGCTCCCCGAGCCCCGCTCCCCACCCTCATTCTGTCTCGTCCCTAACCTGCCTGGGGCAGAGACATTTGACTGTTAGTTACTGTTACTGTTTGCAGGGGCCATTCTGGGGCTTTTCACTTNGTCCTTCACATTAAACACCTAGAAAAACACTCAACTCTTCCCtttttttttgagatggagcctcgctctgtcacccaggctggagtgcaatggcgcgatctcggctcccaggttcaagcaattatcctgcctcagcctcccaagtagctgagattacaggncgtgagccaccatgcctggctaatttttttgtatttttaatagagaccgggtttcaccatgtntggccaggnctggtcttgatctcttgacctcatgatccgcctgcctcggcctcccaaagtgctgggattataggcgtgagccactaggtccggccCCtcttttttttcgagatagggtctagctttgtcgctcaggttggaatgcagtggtgagatcacagctcactgcagcctcgacctcccaggctcaagntgatcctcctgcctcagcctTtttatttatttacttatttatttatttNAACCACTTGCACTCACTTCCACCTCTTCCATTTTTAAGCTAAAATATGAAATGTTTTTAAAAAGGAAAAAAATGATAtctttttttttttttgagacggagtcttgctgtgttgctcaggctggagtacagtggcgtgatctctgctc-actgcaagctccgcctcccaggttcacgccattctcctgcctcaacctcccgagtacctgggactacaggcacctgccaccacgcccggctaatttttaggatttttagtagaaacgngnangttttaccatgttagccaggatggtctcgatatcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggcantgagccactgtgcccggccGG-AAAAAATGATTTCTTACTAATttttttttctttttttctttttttttttttgagacagagtctcgctctgttgcccaggttggagtgcaatggcgcaatctcggctcactgcaagctctgcctcccaggttcacgccattctcctgcctcagcctcttgagtagcntgggactacaggtgcccgccaccacgcctggctaattttttgtatttttagtagacacggnggtttcaccatgttagccaggantggtctcgatctcctgacctcgtgatccgcccgcctcagcctcccaaagtgctgggattacaggcgttagncacc s panTro1.chr19 81258395 1414 + 82489036 TCCCCAACATTTATCTCACCCCTTCCGGATGGCCGCGTGGTTCAGAGCCTGCATGGGCTTCAGGATCCTGCTGTCATTGCCT-GGGTTCACAGGGCTCTGCTGCGGCCAGAGGAGCAGAGCATGGAGACCGTGGCCTCTGCTCCCCGAGCCCCACTCCCCACCCTCATTCTGTCTCGTCCCTAACCTGCCTGGGGCGGAGACATTTGACTGTTAGTTACTGTTACTGTCTGCAGGGGCCATTCTGGGGCTTTTCACTT-GTCCTTCACATTAAACACCTAGAAAAACACTCAACTCTTCCCtttttttttgagatggagcctcgctctgtcacccaggctggagtgcaatggcgcgatctcggctcccaggttcaagcaattatcctgcctcagcctcccaagtagctgagattacagg-cgtgagccaccatgcctggctaatttttttgtatttttaatagagactgggtttcaccatgt-tggccagg-ctggtcttgatctcttgacctcatgatccgcctgcctcggcctcccaaagtgctgggattataggcatgagccactaggtccggccCCTCttttttttcgagatagggtctagctctgtcgctcaggttggaatgcagtggtgagatcacagctcactgcagcctcgacctcccaggctcaag-tgatcctcctgcctcagcctTtttatttatttacttatttatttatAT-AACCACTTGCACTCACTTCCAACTCTTCCATTTTTAAGCTAAAATATGAAATGTTTTTAAAAAGGAAAAAAATGATATCtttttttttttttgagacggagtcttgctctgttgctcaggctggagtacagtggcgtgatctctgctctactgcaagctccgcctcccaggttcacgccattctcctgcttcaacctcccgagtacctgggactacaggcacctgccaccacgcccggctaatttttgggatttttagtagaaacggg---gttttaccatgttagccaggatggtctcgatatcctgacctcgtgatccacctgcctcggcctcccaaagtgctgggattacaggca-tgagccactgcgcccggccGGAAAAAAATGATTTCTTACTAA-ttttttttcttttct--tttttttttttttgagacagagtctctctctgttgcccaggttggagtgcaatggcgcaatcttggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctcttgagtagc-tgggactacaggtgcccgccaccacgcctggctaattttttgtatttttagtaaacacgg-ggtttcatcatgttagccagga-tggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaaaagctgggattacaagagtgagccacc a score=3494.0 s hg17.chr17_random 1859377 58 + 2618010 CTCTGATGCAGGGCATCCGATGGGTCTTGAGGACGTAAACATGGACCTTCATCCCGTG s panTro1.chr19 1269713 57 - 82489036 CTCTGGGGCAGGGCATCAGATGGGTCTTGGGGAGGTCAGCAGGGACCTTCATCCCGC- a score=1620.0 s hg17.chr17_random 1859435 14 + 2618010 TCATCCTCTCTGGA s panTro1.chr19 1269770 14 - 82489036 TCCTCCTCTCTGGA s mm5.chr11 1366743 14 - 121648857 TCTTCCCATTGAGG a score=41100.0 s hg17.chr17_random 1859449 103 + 2618010 CCCCCAGGAGTCCAAGAGAAGGGGCATCATTAGTCCGATTGACAGTGGCAGCAACCTCACCACAGAACCTCATCTGTCCAGCTTGATCATCACCAACAGGTGC s panTro1.chr19 1269784 100 - 82489036 CCCCCAGGAGCCCAAGAGAAGGGGCATCTTCCGTCAGATTGACAGTGGCAGCAACCTCACCACAGA-CCTCAT-TGTCCAGCG-GATCATCACCAACAGGTGC s mm5.chr11 1366757 100 - 121648857 CCTCCAGGAGCCCAAGAGAAGAGGCATCTTCTATCAGATTGACAGTGGCAGTGACCTCACTACAGA-CCTGAT-TGTGCAGAG-GATCATCAAGAACAGGTGT s rn3.chr10 715949 100 - 110733352 CTTCCAGGAGCCCAAGAGAAGAGGCATTTTCTGTCAGATTGACAGTGGCAGTGACCTCACTACAGA-CCTGAT-TGTGCAAAG-GATCATCAAGAACAGGTGT a score=70.0 s hg17.chr17_random 1859552 4 + 2618010 ACTT s panTro1.chr19 1269884 4 - 82489036 AGCT s mm5.chr11 1366857 4 - 121648857 GTCT a score=3718.0 s hg17.chr17_random 1859556 91 + 2618010 GGGTGGAGGCACCTCG----------------------------------------------------------------------------------------------------GAACCGCCTCATGGGCGCTCTACGCTAGACTTATCGTGCCCTCCCCCTCGGAGACGCCTCATGAGAGCTCTCTGC s panTro1.chr19 1269888 191 - 82489036 GGGTGGGGGCACCTCGGAGCCGCCCCATGGGCGCTCTCCGCTAGACTCACCCTGCCCTCCCCCTCGGAGGCGCCCCATGGGCGCTCTCCGCTAGACTCACCCTGCCCTCCCCCTCGGAGCCGCCCCATGGGCGCTCTCCGCTAGACTCACCCTGCCCTCCCCCTCGGAGCCGCCTCATGGGCGCTCTCCGC a score=2499.0 s hg17.chr17_random 1859647 16 + 2618010 TAGACTTACCCTGCCC s panTro1.chr19 1270079 16 - 82489036 TAGACTTACCCTGCCC s rn3.chr10 716119 16 - 110733352 TATACCTGTCTGGCCT a score=0.0 s hg17.chr17_random 1859663 3 + 2618010 TCA a score=77.0 s hg17.chr17_random 1859663 3 + 2618010 TCA s panTro1.chr19 1270095 3 - 82489036 TCC a score=40919.0 s hg17.chr17_random 1859666 143 + 2618010 CAAGTTGGAGTATGAAGCGCAAAACCAGTAGAATGTAACCAAGGAGCTGGCCTTCCTGGAGGCTGCCAGGCAGCAAGCTTTACAGCCCCTGGGGGAGCGCGATGGTGACTTCTAACCAGGCAGAAGCCCTGCGCGACC-----------TCACC s panTro1.chr19 1270098 145 - 82489036 CAGGTTGGAGTATGAGGCGCGAAACCAGAAGAAGGAAGCCAAGGAGCTGGCCTTCCTGGAGGCTGCCAGGCAGCAGGCGGCACAGCCCCTGGGGGAGCGCGATGGCGACTTCTAACTCGGCAGAGGCCC----CGGCC-GGCCCT----CCCCC s mm5.chr11 1366954 151 - 121648857 CAGGCTGGAGTATGAAGCACGGAATCAGAAGAAAGAAGCCAAGGAATTAGCCTTTCTGGAGGCCACGAAGCAGCAGGAGGCGCCGCCTGGAGGGGAGATTGAC--TAGCTTCAGACCCGG-AGATGTTGTTCACGCCCTTGCCCTGTGCCCACC s rn3.chr10 716135 140 - 110733352 CAGGTTGGAGTACGAAGCACGGAATCAGAAGAAGGAAGCCAAGGAATTAGCCTTTTTGGAGGCCCTGAGGCAGCAGGAGGCACAGCCCAGAGGGGAGACTGAC--TAGCTTCTGACCCGG-AGACGTCATTCACGCCC-----------TTGCC a score=2049.0 s hg17.chr17_random 1859809 26 + 2618010 TGCTTTGTTCTTG---GCC-TCTGCGTTTG s panTro1.chr19 1270243 28 - 82489036 TGCTCTGCTTCTG--CGCCTTCTGCGTTTG s mm5.chr11 1367105 29 - 121648857 TCTTCTCTTCCTGCCCGGC-TCTGCTTCTG a score=1690.0 s hg17.chr17_random 1859835 46 + 2618010 GAC-TAGGAAT-TGCAGGACT-TCCTCTCT-ACTGGCCT-GCTCTGGAAGG s panTro1.chr19 1270271 51 - 82489036 GACATAGGACTCTGCAGGGCCGCCCTCTCTAACTGGCCTGGCTCTGGAAGG a score=602.0 s hg17.chr17_random 1860056 19 + 2618010 AGCTCGCCGGGAGNCTGNC s mm5.chr11 120201705 19 + 121648857 AGCTCGCTGCAGGTCCGCT a score=10457.0 s hg17.chr17_random 1860075 124 + 2618010 GCG--GANGGGCGGGCGGGGACcctcggctgccgctcccacccccgc-----------ggggccgcncccgagcccgncc-tccg------------ncgccgccctcgccctgcgtcnccgccGGAAAGTTTGCA----------------------CCGANCCCGATCTG s mm5.chr11 120201724 144 + 121648857 GCACTAAGGCGCGGGCGCGGACCCTCATCT--CTCCCCCTCCCCCGC-----------GGG-CCGCTCCCGCCCCCACCCCTCCC------------CCTTCGCCGCCGCCCAGCGTCGCCGCTGGAAAGTTTGCGAGCGGCTGGCGCGGAGCTGGCGCCGACCCCGATC-- s canFam1.chr18 30327959 142 + 66173745 gcg--gaggggcgggcggggacCCTTGGCTGCCGCTCCCCCTCCCTCTACCCCTCCCGGGGgccgcccccgcccctccgcctccgcctccgccgccaccgccaccgccaccCAGCGTCCCCGCTGGAAAGTTTGCGCACCGCTG---------------------------- a score=15656.0 s hg17.chr17_random 1860199 232 + 2618010 GCAGCGCCGNGAAGACGAGCGGTCACCGGNG-CCNGACCCGAGCGCGCCCAGAGGACGGCGGGGAGCCAAGCCGACCCCCGAGCAGCGCCGCGCGGTGAGCACCTGGGCCGCGGCCCCGAGGGGACGTTGGGGAGTCG---------------------------ACCCGG----------TGGGGACAGAGAccgcggggc-gggcgcg------------------gcgnggccg--ngggcgcgggg-------------agcggggagccggcc---------gggcg----------gTCTCCGGGGTCCGGGCTGGT s mm5.chr11 120201868 245 + 121648857 ACAGCGCGGCCGAGGCGAGCAGTCGCCGGCGCCCAGATCCGAGTACGCTC-GAGGACCGCGAGGAGCGCAGCCCTAGCCCCGGCGACTGAGCACAGTGAGCACTAGGGTCG-GGCCCCGAGGGGATGGTCTCAGGCTG-----------------------------TCTG----------TGGGG-----TGCTGGAGCAC-GAGCGTG------------------ACCTGGGCGCACAGAAGAGGGG-------------AGCGGGGAGCTGGCCCTCGGGCCTGGACGTAAGCCAGCTGTCCCTGGGGTTTTGGGAGTC s rn3.chr10 109935892 298 + 110733352 GCAGCGCGGCGGAGACCAGTAGCCGCCGGCGCCCAGATCCCAGTGCGCTC-GAGGACCGCGAGGAGCCCAGTCCTAGACCCAGCAAGTGAGCACAGTGAGCACTAGGGTCG-GGCCCCGAGGGGACGGTCCCAGGTGGTCTATGGGGTGCTGAAGCACGGGCATGACCTGGGCGTGCAGAATGGGG-----GAGCGGGGAGCTGGGCGTGCAGAATAGAGGAGCGGGAAGCTGGGCGTGCAGAATGGGGG-------------AGCGGGGAGCTGGCCCTCGAACCTGGACGTAAGCCAGCTGTCCCTGAGGTCTTTG----- s canFam1.chr18 30328101 214 + 66173745 -------------GCCTCGGAGCCGGCGCCGACCAGAGCTGCCGGAGGCG-GAGGGCGG-GAGGGTCGGGGCCGGAGCAGGAGCGGGCG-GCACGGTGAGTCCC--------GTCCCCGAGGGCAGGTCCCCAG-------------------------------AGCCCC--------------------CACCTGGG--C-GGGTGCG------------------GCCGGGGCGCTCGGAATGGGCAGCCCAAGATGGCCAGCGGGGA------CCCCTGCCGTGGGCGGGA-------GTTCTCAGGGCCTGGGGCGTC a score=-10264.0 s hg17.chr17_random 1860431 42 + 2618010 GCGCTC--------------------------CTCAGTCCCGTCAGACACCCC---------------CGTTCCCAAC---CCCG---------------------G s mm5.chr11 120202113 60 + 121648857 GCGGTT--------------------------CTCGTCCCGGTCTAACACCTTATTCAAAACGGGAAATGTGTCCTACTGTCACG---------------------G s rn3.chr10 109936190 63 + 110733352 GTGGTT--------------------------CTCACCTCCGTCTAACACCTT---------------AGTTTTCAAA---CCGGGAAATGTGTCCTTCTGTCATGG s canFam1.chr18 30328315 70 + 66173745 GCCGTTCGCACCCTCTGGAGCGCCTCTGAATCCCAGTCCCTGGCTGCGCCCTT---------------CCAGCTCAGC---CAGGCA-------------------A s galGal2.chrUn 67607271 40 - 165033910 GCACCC--------------------------CTCTGTGCCCCACACCACCTC-----------------CATCCAAC---CCCT---------------------G a score=-23471.0 s hg17.chr17_random 1860473 77 + 2618010 CTCGGACACCACCCGGTCCTG----CACCGTCG------GGCAGGTCCAGGGGTCTCAG----CCCCTCC--CCCGTTCTCTGG-------------TCCTGGG-------GG s mm5.chr11 120202173 90 + 121648857 TTAGG--GCCACCTGATTCCC----AACCGTCTCC----TGCAGGT-TAGGGGTCTCAA----CTTCTCCTTTCTATTTTCTGGGAGCGCAA-----TCCAGGAAGGT---GG s rn3.chr10 109936253 90 + 110733352 TTAGA--GTCACCTGATTCCC---TAACGGTCTCC----CGCAGGT-TAAGGTTCTCAA----CTTCTCCTTTCTGTTCTCTGGGAGCGCAA-----TCTGGGA-GGT---GG s canFam1.chr18 30328385 92 + 66173745 CCAGT--GTGTCCCGTCCCCCGGACCACGCTCCCCGTGGGGCAGGA-T-GGGGTCTCAGGGCTTCGCTGCCCTCCCTTCCCTGG-----------------GGAAGGTCGCCA s galGal2.chrUn 67607311 67 - 165033910 C------GTTTTCCCCCTTGC----ATGGGGCAGC----TGCAGGA-----GATGCCAT----CCCCTTC---CCCTTCAGCAG-------------TCCTGGA-GG------ s danRer1.chrNA 196322516 78 - 390413307 CCTGGGTGCCCCCTGGCCCTT----------CACC------------TAGGGGCCTCTG----ACCCCAC--CAAGCTCCCCGGGGGTCCAGCTCTCTCCCTGACC------- a score=-25660.0 s hg17.chr17_random 1860550 610 + 2618010 ------GCGCGGCTGGGGG------CGGGGGTGTCGCTGGCCGCCT-----GGCGCCCTGC-GGCGGCCACACTGCAGCGGCCACACTCCC-CACTCAgg---------gccccgggccccgccgcccTGGGGAGCGCACAAAGCGCCGCGGACGCGTCCCCGAGGCGCG-GGGTCTCACCAGCGCTGTCTCCCCTCGGTGGGCTCCTG-------CCCCGA-GGACTGCCCGGTGGCACCGGCGCGGCCCAGGATGGGG----TGAGGGGTGTCTGCGCCCCGC-CTGGCCGCTCCTCTTCCGCGGCCCAC-ACTGGCGACTTTGA-CCCCGGCAAG-----CGGGTCACTG-----CCCT---GCCCGGCTCCGGCCCCCCCGGCGCCCCACCACC-----CGGCCGACTCGG---------------------CCACCGGGCTTATGCTCCGACTCTGAACCGAC----------------TGACCCCGG-----CCCCCTCGGCGCCCGCATCCTCCAAGGACCGGCCAGGGCTGCTCT-CTGCCCTT-GGTATTGGGGACATCAGGGTT----GGGGGGTCTGGGTGCACCCACGCCTG-------CCCCGCCCCCACG---GGGTGAGGGCGCAGGGATAGGGCTTTGTCAACAGCCTGTGGCCCCTGATCCCGCCCC-------GGTG--CCCTGACCTTCC-ACTACC-TTCTCTGGTTTCACAAAAACATCC s mm5.chr11 120202263 524 + 121648857 ------GAGAGGGTGGGTG------CAGACGTGGATCCTGCTGCCC-------CATTGAAC-GCCCAACACACTCCAGCTTCCAGCTTCTCACACTC------------------------------------------CAAAG----GCTCGCTCATCCCCTTCAGATG-GATT--------CGCT-TCCCCTTCCTATGTGTCCCTG------ATCTCCA-GAACTTCC---TAGCAGTGTCTCAGTCTTG---CGGG----TTAGATGTGTAGGCACCGTGCACTGAGGGTTTTTTTT---------------------------CCCCTGCAAGCT---CAGGTCATTG-------------------------CTCCCCAGAG----ACCACC-----TTCCCACTTCAGA-------------------CCCGCGAAGTTT----TCTGTCGC-AAACCGAC----------------TGATCCCTT-----ACCTCTTAGCTCTCGCATCCTTCGAGGTTAGACCAGGCATATTTTGCTGTTCTTCTGTCTTGGAGACATAGAAG------GGGGAATCTGAGCTCACCCGAGCCCGTGGGTATCTCCGCCCCTTTT--CAGGGGAGGACTGGAGAACTAGGCTTTGTC-ACAGCCTGTGGCCCCTGATCCTGTCCC-TGCCATAGGA--CTATGACCTGGT--CTAGT-TTCTCTGTTTTGACAAAAACACCC s rn3.chr10 109936343 549 + 110733352 ------GAGAGGGTAGGTG------CAGGCGTG------GCTATCTCATCAAACGCCCAAC-GCCCAACGCACTCCAGCTTCCAGCCCCTCATACCC---------------CAATGGCTCGC----------------CCATC----CCCTATGTGTCCCCAA------------TCTCCAGGACT---TCCTTGCAGTG---------------------------TCC--------------CAGTCTTG---CCGG----TGAGATGTGTAAGCACCGTGCACGAAGGGCTCTTCTTCCACTGCTCACAATTTTTTACTTTGA-CCCCTGCGAGCG---CAGATCACTCACTGCCCTT---GTTCTGCTCCAGGCTCCCCAGAG----ACCCCC-----TTCCCACTTCAGA-------------------CCCTCGAAGTTT----TCTGTCGC-GAACCGAC----------------CGATCCCTC-----ACCTCTTGGTTCTCGCATCCTCCGAGGATCGGCCAGGGATATTTTGCTGTTCTTCTGTCTTGGAGACATAGAAG------GGGGACTCTGAGCTCACCGGAGTCGGTGGGTATCTCCGCCCCTTTT--CCGGGGAGGACTCAGGAATTAGGCTTTGTC-ACAGCCTGTGGCCCCAGATCCTGTCCCTTGCCATAGGA--CTATGACCCGGT--CTAGT-TTCTCTGTTTTGACCAAAACACCC s canFam1.chr18 30328477 607 + 66173745 ------GCgcgctttgggggcgcttcggggacgcttcggg-----------ggcACCAGGCAGGCGGTCATGCGGCTGCGGGGAGCCCTGCACTCCCTGTCTGGCACCCACCCCGAGGCCCTCCCCAGGGG--------CCCAC----ATGGAGCCATCCTGGAGGAGGG-GGCT-GGGCAGCTGCT-GTCCCATGCGGAGGGCCCCAGCACCCCCCCCCGG-GACCCCCC---CAGCGGCATCCCTTCCACC--------------GGTGTCCCCGCTCCCCACCTGGTCAGCTCCTCGG-CAGGGCCCAC-ACTTGTCACTTTGACCCCCGGGGAGGC---TGGGTCACTG-------------CCCTGCTCTCACCTCTCCAGCG----GCCCCCA----CTGCCACTTCTGG-------------------GTGGCAGGGTGTCTGTCCCCACCT-GGACCTAC----------------AGATCCCTG------CTGCCTGCTGCCCGCATCTTCC--GGGCTGGTGCTGGCTGCCTCCGGGCCCTTCTGTGCTGGGGG-ATGAGGGCT--GGTGGGGAGCTGCTCTCTGGCTGGCCTCCAGGTC-ACCCGCCTGGGTGCCCAGGGGAGGAAGCAGGAACCGGGCTCTGTCAACAGCCTTTGGCCCCTGATCCTGCCCT-------GGGG--CCATGACCTTCCTGCTACT-TGCTCCGGTTTCACAAACACCCCC s danRer1.chrNA 196322594 620 - 390413307 TTGCAATAGAGGCC-----------CCAGGGTGCCCCCTGACCCTC-------CACCTAGG-GGCCTCTG-ACCCCAGCAAGC---------TACCC----------------AGGGGTCCA-----------------CATCTCTCCCTGGACTTGCACTAGACGCCCATGGGT-GCCCCCTGGCC---CTCCACCTATGGGCCTCTG------ACCCCAGCAAACTACC---AAGGGGTCCACCTCTCTTC---CTGGACTTGCAGTAGAGTCCCCAGGGTGC-CCCCTGGCCCTCCAC------------CTAGGGGCCTTTGA-CCCCAGCAAGCTGCCCAGGGGCCTGCCTATCTCCCTGGACTTGCAGTAGAGTCCCCAGGG----TGCCCCATGGCCCTCCACCTAGGGCCCTCTAACCCCAGCAAGCTACCCAGGGCTCCAACTCTCTCCCTGGACTTGCAGTATAGGCCCCAGGGTGCCCCCTGGTCCTCCACCTAGGGGCCCTTGACCTAAGCAAGCTGCCCAGGGGTCCACCTCTCTCCCT-GGACTTGCAAA---AGAGGCCCCAGGGTGACCCTTGGCCCTCC---ACCTAGGGGC--CTCTGACCC------CAGCAAGCTGCCCAGGGGCCTGCCTATCTC-----CCTG-GACTTGCAGTAGAGTCCC----CAGGGTGCCCCATGGCCCTCCAACTACTGCCCTCTGACCCCAGCAAGCTACCC a score=-17908.0 s hg17.chr17_random 1861160 173 + 2618010 -CNGGCTCCCATCCC--GGAGCTCCTCAAA--------------------GCGTCTGAG---------AGGCCCCTTGCGGACGCCC---------------TGGGAGCCCCGCTGCCTT-CCTGGNACCAGTGGCCGCTCCACCCATCCTG-------GGGGCCCA------GCTCCAGGTCTGC----GGGTCCCTCAGCCGCCCCCAG----------TGGGAATCGGTG-GAGCCTGACGCAGCC s mm5.chr11 120202789 166 + 121648857 -CCAGTTGATATCTCTGGGGATTCCTAAGATCAAAAACGTTGCTACTTTGGCTTCTAAGGAACCAAGAGGATCCCCCCCCCACCTTC---------------------CCTCGATGCCTC-CCTTTGGCCACTGGGCCATCCATCTAACA--------------------------------------------CCCTCCGCCACCTGCAG----------AGAAAATCGGT---AACC--ACACTGC- s canFam1.chr18 30329084 190 + 66173745 -ACACACACCAACTC---GGACCCTTCTGA----------------------CCCTGGA---------AGTCTCCCTCCCCATTCGGAGCGCAGGGCAGCAGGGGTGACCCCACGGCCTTGCCTGTGG--GGTGGGCCATCCGCCCATCTGG-------GGGCCCCACCTCCCACTCCAGGCCTGG----GGGCCCCCCGGCCGTCCCCAG-----------GGAAATCCATGAGACCCTGGCTGGGCC s danRer1.chrNA 196323214 175 - 390413307 AGGGCTCCACATCTC-------TCCCTGGA-----------------------CTTGCAGTAT-----AGGCCCC---------------------------AGGGTGCCCCCTGGCCCT-CC---AACTAGGGGCCTCTGACCCCAGCAAGCTACCCTGGGGTCCACCTCTCTCTTTGGACTTGCAGTAGAGGCCCCAGGTTGACTCTTGGCCCTCCAACTAGGGGCCTCT--GACCCCAGC------ a score=91.0 s hg17.chr17_random 1861333 1 + 2618010 A s danRer1.chrNA 196323389 1 - 390413307 A a score=0.0 s hg17.chr17_random 1861333 1 + 2618010 A a score=-5696.0 s hg17.chr17_random 1861334 59 + 2618010 GGAGCGCCCAAGAGT-CACGTGTTCTGC----------------CAGGGAGGACATGGGACAGGACACGGGGTGCC s mm5.chr11 120202955 65 + 121648857 -AAACACCCACGTGT-CCTTTGTCCTGTTGGAGCTTGCTGGAAGCGGTGGTGGCATGGGACA---------ATGCC s canFam1.chr13 25229174 39 - 66159989 -----GGACAGGAGC-CGCATCC---------------------TGGGGTGGGGGTCGGGCA----------CGCG s danRer1.chrNA 196323390 57 - 390413307 -AGCTTCCCAGGGGTCCACATCTCTTCC----------------TGGACTTGCAGTAGAGGC--CCTCAGGGTGCC a score=-6694.0 s hg17.chr17_random 1861393 145 + 2618010 AGCCCTGCAAAGCGGCCGGGGCAGTGG-AGCTCAGGTGGCCCTAAGCCCTGGTGGTGGCTGGTGTGGCCCGGCAGGCAGCTGTGGGAGGGAGGAAGGGGGTGGCATGCGGTGGGGGTCTAGAG---AAGGCGGGCAGGGCACCTCGGGA s mm5.chr11 120203020 126 + 121648857 AGTCC----GAGTGGCTGGTGTGGTGGTGGCATGGGACAATGCCAGTCC---GAGTGGCTGGTGT-GCCAGATA------TGTGCTCTGAAGAAGGGGGATTGATT--------GATCTAAAGGC-AAGACAGGCAAGCATCTTAGGGA s canFam1.chr13 25229213 98 - 66159989 GGTCT----GGGCACCCT--GCGGCGGCCGCCCG----------AGCCT---GGCAGCCCCGCCTCACTGGACGGCTCCCGACGCTCGCG------------------------GCGCTGAAGCCGTcggcgcgccgggca-------- a score=2144.0 s hg17.chr17_random 1861538 70 + 2618010 GCCCCCCCATTGGGCACCTCGGGAACCCCCCACATT-GGGCACCTCGGGAACCCTCCCATTGGGCACCTCG s canFam1.chr13 25229311 71 - 66159989 gccctcccgcggcccccccccgcacccccccTCCTCCAGGTGCCTCGGGACTCCCCCCTCCAGGTGCCTCG a score=7038.0 s hg17.chr17_random 1861608 82 + 2618010 GGAACCCCCCACATTGGGCACCTCGGGAACCCCCGCATTGGGCACCTCGGGAACCCTCCCATTGGGCACCTCGGGAACCCCC s mm5.chr12 102481153 82 + 115071072 GGCAGCCCTCACAATGGGAGCCACGGCAGCCCTCACAATGGGAGCCACGGCAGCCCTCACAATGGGAGCCACGGCAGCCCTC s canFam1.chr13 25229382 79 - 66159989 GGACCCCCCTCCTCCAGGTGCCTCGGGACCCCCCTC--CAGGTGCCTTGGGA-CCCCCCCTCCGGGTGCCTTGGGCCCCCCC a score=1314.0 s hg17.chr17_random 1861690 32 + 2618010 NTATTGGGCACCTCGGGAACCCCCACATTGGG s mm5.chr12 102481235 32 + 115071072 ACAATGGGAGCCACGGCAGCCCTCACAATGGG a score=59742.0 s hg17.chr17_random 1862175 705 + 2618010 TGGGTGCTCAGCTGGAAATTGGTCCCCCCCCGGCTCCACCCACCCCTGTTGGGGTGAGGAGCTGGAGTCTCNCCTACCCATATGGGACCCACCACCCGCAGGGAACGGAGGACGCTCACACTTCTGCACCTCCTGCCTCACTATCAGAGACCCAGTGGAGAATTGCCTCCNCACCTCACCTCTTGTATTCAGAGGCCCTGACCCCTNAGGGATCCNGGACTAGGGGTGCCCTATGGGGAGCCCACCTGTGGCCTGTGGATGCTGAGCTGTCGGGGGAATCCTCCAGGATCCCCAGCCCNACNTTNCCAACCTTCTGTTGAGGCTGAGGGGACACAGAGCCCN----------------CACTCCTGGGTCCTGACTGTTTCAAAGAAAGGCCTGGGGGACTGGGCAGCCAACCCCTCCCTCGGCTCGCTGGGGTCTCCAGACTGGCTGCCCGGCTGGAAGGTGGGGCCCTGGCACGCGAGGACCTCATGTGTGGAGGCACTGGCTTGGGGGGTGCTCCCAGTGGCTCTAGAGTCAACATGACAGGCATCGAATGGCTCCTGTTTCTCTGNCAGAGTTGGGGCAGAGCCAGGCTTGGCCACGCTGGGCTCTAANGGGCTGTCATTTTGCCCAGGGAGCTCCTGGNCTGGGTGGTCCTCCCCCCAGGGTGAGCACGCGTCCCCCCCACCCCCACTTCGAGGCGCCCAGGCAGGGAACAGCTCA s panTro1.chr19_random 1747482 716 + 57627672 TGGGTGCTCAGCTGGAA-TTGGTCCCCCCCCGGCTCCACCCACCCCCCTTTAAATGAGGGGCTGGAGTTTC-CCTACCCATATGGGACCCCTCGCCCGCAGGGAACGGAGGACCCTCACACTTCTGCACCTCCTGCCTCACTATCAGAGACCCAGTGGAGAATTGCC-CCCCACCTCACCTCTTGTATTCAGAGGCCCTGACCCCT-AGGGATCCGGGACTAGGGGTGCCCTATGGGGAGCCCACCTGTGGCCTGTGGATGCTGAGCTGTCGGGGGAATCCTCCAGGATCTCCAGCCCCACCTTCCCAACCTTCTGTTGAGGCTGGGGGGACACAGAGCCCCACTCCCTCTTCCTCCCCACTCCTGGGTCCTGACTGTTTCAAAGAAAGGCCTGGGGGACTGGGCAGCCAACCCCTCCCTCGGCTCGCTGGGGTCTCCAGACTGGCTGCCCGGCTGGAAGGTGGGGCCCTGGCACGCCAGGACCTCATGTGTGGAGGCACTGGCTTGGGGGTTGCTCCCAGTGGCTCTAGAGTCAACATGACAGGCATTGAATGGCTCCTGTTTCTCTGGCAGAGTTGGGGCAGAGCCAGGCTTGGCCACGCTGGGCTCTAAGGGGCTGTCATTTTGCCCAGGGAGCTCCTGG-CTGGGCGGTCCTCCCCCCAGGGTGAGCACGCGTCCCCCCAACCCCCACTTCGAGGCCCCCAGGCAGGGAACAGCTTA a score=2199.0 s hg17.chr17_random 1862880 15 + 2618010 TTGGCCAGTGTCCTT s panTro1.chr19_random 1748198 15 + 57627672 TCAGCCAGTGTCCTT s mm5.chr11 120204112 15 + 121648857 TTGGACCACATCCTT a score=80610.0 s hg17.chr17_random 1862895 486 + 2618010 CCT--CCTTGTCCCCCGCCTG------CATCTCCA----CCATCCACCCTGCTCCAGCTGCCCCTTGTCCCTCTCCCCGTCCCCTGCCCAGAGC---CCCAGGTCTCCCCTGCACCCCTGAGCCTGCCCACCTAGCAGTGCCCCTCGTCCAGGGCCC-----CTCTGGGTTGGGGGT---GCACACAGTNGGGGAGAGGCGGCTCCT--------GCTGCTCCTCACCCAGCCCGGCTCAGTGGCCGGAGCCGCCCAGGACAGTGGCAGTAGATGGGGCT-GTTTGATCAGGATCAGGGAAGATAAGGCCCCTTGCGTGACCCCAGAGCTGGGGACGCCAAAACTGCCC-CTCCTCCCCCACCCGCCTGCCGCTGTCTCCGCCAGGGAGAGGCCCCTACTCTGTGGGTCCTTCGCCCCAGCACCAAGCCTGCATGGCTGCTCACCTGGCTCAGGAACTGGGGATCAGCGACACACGGGTCCNTGCCTCCCATCGGCCCCTACATGAGCCCAGGGTCCAA s panTro1.chr19_random 1748213 490 + 57627672 CCT--CCTTGTCCCCTGCCTGCATCTCCATCTCCA----CCATCCACCCTGCTCCAGCTGCCCCTTGTCCCTCTCCCCGTCCCCTGCCCAGAGC---CCCAGGTCTCTCCTGCACCCCTGAGCCTGCCCACCTAGCAGTGCCCCTCGTCCAGGGCCC-----CTCTGGGTTGGGGGT---GCACACAGCC-GGGAGAGGCGGCTCCT--------GCTGCTCCTCACCCAGCCCGGCTCAGTGGCCGGAGCCGCCCAGGGCAGTGGCAGCAGATGGGGCT-GTTTGATCAGGATCAGGGAAGATAAGGCCCCTTGCGTGACCCCAGAGCTGGGGACGCCAAAACTGCCC-CTCCTCCCCCACCCGCCTGCCGCTGTCTCCGCCAGGGAGAGGCCCCTACTCTGTGGGTCCTTCGCCCCAGCACCAAGCCTGCATGGCTGCTCACCTGGCTCAGGAACTGGGGATCAGCGACACATGGGTCC-TGCCTCCCATCGGCCCCTACATGAGCCCAGGGTCCAA s mm5.chr11 120204127 407 + 121648857 CCCCACCATGTCCCTTCCCTG------TATCTCCACTCCCCATCTACCC-ACGCTGGTCATCTTTTATCACCTTCACACTGCCCTG--------------AAGCCTTCC---CGCCTCTAACCTTCCTCTTTCAG------GCCTCTATGAGACCCCAGTAGCTCTGG--TGGAGGCCAGGCATAGTGTG-TAAAGAGCCAGCTTCTGGCTTTTGGCTTCTCCATACCCAGCCC------------------------------ACTAATAATCTGGGAC-ATTTAATGCAAATTAGGAAAG-TCATGCCACTTG-GTGACCCCAGAGGTAGGGATACTTGAACCACCTACACCTCCTCAACCTGTCTGCTGCCTTGTCC-CCAGCAGGAACCCTCTACTCTGAGGGTGTTTTTCCCTGA--------------------------GGTTCAGAGACCTGAAAT--------CCTGGATCT-TGCCTCTGGCCAGACCCTGT-TGA---------CCAA s rn3.chr10 109938294 424 + 110733352 CCG--CCATGCCCCTTCCCAG------CATTTCCATTCTCCATCTACCC-AAGCAGGTCATTCCTTATCACTGTCACACTGCCCTG----GAGCTTTCCCACCTCTGCCCTTCCTCTTTGAG---GCCTCTTTGG------GTCTCTATGAGACCCCAGCAGCTCTGGGGTAGAGGCCAGGCATAGTGT--GTGAAAGCCAGTTCCTGGCTTCTGTATTCTCCATACCCAGCCC------------------------------ACTAGTAATCTGGGACGGTTTGATGCAAATCAGGAGAG-CCATGCTACTTG-GTGACCCCAGACGTAGGGACACTTGAACTGCCTTCACCTCTTCAATCTGTCTGCTGCTTTGTCC-CCTGTAGGAACCCTCTACTCTGAGGGTATTGTGTCCTGA--------------------------GGTTCAGGTATCAGAGACCTGAAAC-CCTGTGTCT-TGACTCTGGCTAGACCCTGT-TGA---------CCAA a score=6059.0 s hg17.chr17_random 1863381 42 + 2618010 GGGCTGCGGTTGGGAGCTCTTTAGCAGTCTGTGACGCAGGTG s mm5.chr11 120204534 42 + 121648857 GGGCTTGGCTCAGGAGTCCCTCAGTAGGTTGTGAACCAGATG s rn3.chr10 109938718 42 + 110733352 GGGCTAGGCTCAGGAGCTCCGTAGTAGGTCATGAGCCAGATG a score=-642.0 s hg17.chr17_random 1863423 33 + 2618010 CCTGTCCCTGTCATTCAGCTGTCACACTGNCTT s mm5.chr11 120204576 6 + 121648857 ---------------------------TGACTG a score=-6008.0 s hg17.chr17_random 1863456 184 + 2618010 GGGGCATCTCAGGCCCCGTTAG---CGGGGCAGCCCTGGGTGGAGCTGGCCCCACNGCGGGCTCACCCAGCCGCTACCTGGAGGAGGCTAAAATCCAGGCTGTCCCGTGGCAGCCAGC---AGTCCAGGCCT-GCCCGGAAACCCTCTGCTCCAGCTGCAGCCTTCGNCCCATCTCCTTGCCCCT-----------------CTCCCC s mm5.chr11 120204582 148 + 121648857 AAGGGAGCATAAAT----GTAG---GAGGTCAG----GAGGGGAGC---------------CCTACCAAGCTGCTATTC--------CTAGAACTCAGCTGGTCTTATTACAGCAGGCTGAAAGCCAGGGCT---------CCACTTTTCCCCAATTGGGTTCTTCTCTCTCATCCCCACCCTCT-----------------CTCCCC s canFam1.chr18 30330564 169 + 66173745 GGGGCCACTGAAGCCCCGTGAGCCCCGGGACGACCCTGTGCCGAAT---------------------------------GAATGAGGTGGACACCCAGG-GGCCCAGCCAGGGGCAGG---GGTGCGGCGCGCGCCCAGGGGCCTCCTCGGCCAGCT--CGCCCCAGCTCCACCCACTGGACCCTGATGGGCGAGGCTGAGCCCCTCC a score=4325.0 s hg17.chr17_random 1863640 627 + 2618010 GGCTTC----------CCCCTGGC-----ACTGCCTTCCAGCTGGCTGG---------------CCCTCCATCTGCCCAGCCATCCATCCA--CACCTCTTATTCCAT--TTG--AGGGTGCCCCAAAGAAGAGCCCGTAACAGCCCGGGGGCTCATAGCCAGCCACTCGCGGGACCCCGCACATGCACGTGGACCCACAGGAAGACCCTCCCTGNCTTCTCCCNACAGAANTTCAGTTGGTGCAGAAACTGGGCTCTGTAGCAACGAAAGGCCGATTTGTGTAGCTGTTGCCACCCCGAACTCCCAGCTCAGATGCTGGCTGTGGCATGGGGACCAGGGGNCTGTGACTCCCACAGCCCT--GGCAGGCACCACGGGNGGNATGTCCTCCCCACCCTGTGCCCCCACCNCTAGGCCAGCTCCTCCTCCAAGTCGACGCCCGCAGTGCTAACCTCAAAGGACTGTGCAGCCAGCC-------TGTGGCGTCCCATGGGATCCAGGAAGCCCAACC-GAGCCTTGCACGGCACCCACGAG-GCACCTAGGCACCCCGGTGCTGGGCAGGGGGCACACATGTGACACAGACCCCTGAGTGTGGGCCCCACACACTTGGCCTNGGCACAGCTGCAAGCCAGCCCAGCCACTTTGCTCGCTGTGGCACTGGGGCCAAG s canFam1.chr18 30330733 539 + 66173745 ACCTGCTGCAGCCTGACCCCTGGCTGCTCACTGTCTTCCGGCCTGCTGGTCATcgtccatccatccgtccgtgtgcgcacccgtccatccatccgtcACTTGCTCCCTCCTTGCCAGGGTGCCAGAGAAGGGAGCCT-TCACAGCCCTGGAG-TCATT--------CCCGCAGGGCCACACCCAGGCTCG-----------AAGGGGCCCCCCCG----CACCCCTGTGGAATTCAGTCAGAGCAAAAGCA---------AGCAAGGAAAGGAGAATTAATAAGGCC--TGGTGCCCCAGATCTCCA-CCCAGACTTGGGCCA--------GGCCCAGGG--------------CAGCCCTCCTGCTGGCACCACCAGGG----------------CTGGGGGCCCGTGCCAGGGGC---------------CTGGCGCCAGCACTAATGATCTCGAAGGAATATGCAGCCAGCCACCTGCACGATGCGCCCCAGGGGACCCCGGAGGCCGGGCCTGAGCCCCAGGAGGGGCCCGGGGGTGCACCTAGATCCCCCGC--CCGGGGAAGGGGCACGGGAGGGACAGGGGCCATCCGGAGCAGG-----------TGCCCTGGGCAAGGCCGGG------------------GCTGGCTCTG-------------- a score=506.0 s hg17.chr17_random 1864257 10 + 2618010 TGGGGCCAAG s rn3.chr10 109939462 10 + 110733352 TGAGGACGAG a score=1824.0 s hg17.chr17_random 1864267 302 + 2618010 TGATGGAAGGTCCAGGCACCGCCACCCTCACGCTTGGCACATTNGGCTCAGGTCAG----CCTGGCAAGCCAGCTTTCCCAGGGGCTAAGAATAGGTGAGGAGGATGGTGAGGAAGCAGCCGGGGGCTGTCAACTGAGGGAGGAGGTCACCATCTGGGGAGGCTG-------GTCCCCCACCCAAGAGC-ATTGGGTCACCCTGCAGGAAGGTGG--CTGCCANCCAGCAATGAGACGAG------GGGCTCTGCGACCCTCAGA-----GCTGCCAGCC-------AGCCAGCC--CTGGGTGGCAA------------------------GAGTGACTCCTCCTGGGGTCTCCTCCCT s rn3.chr10 109939472 240 + 110733352 TGGCCATGGACCTGGGCACTGG-ACCCTCGCTCTC------TTTATCTGAGGTCAGATTGCCTGGCCAGTCAGCTTTCCCAGG--CTAAAAATAGGCG--------------GAGGTGTCCAGGACAACATAACTGAGGAGAGAGGT----------AGTGGCTGAGTTTTCGGTGCCACTCTGAGAGA-TTTGGGTGACCAGATAAGGAGGTGA--TTGC---------------------------------------------------TTTCAGCC-------AGCCAACC--CCATGTAGCAG------------------------GAAAACAGTTGCCCATACTCACCTGTCT s canFam1.chr18 30331272 295 + 66173745 TGATGGATGGCCCTGGCACCGC------------C-------------------------CCAGCCCAGCTGCCTTTCCCAGGGGCTAAGAATAGGTGGGGAGGACGGCAAAG-------------------GCCGAGGGAGGAGGT--GGATCCCGGGAGGCTG-------CTCCTCCTTCCGGCGGCGGCTCTGCCACCAGGCAGCGTGGTGGCTCTGCCAGCCAGCACCGAGGGGTGGGCTCCGGGCTGTCAGAGCTGCAGGGAGACGCCACCGGCCGTGGGAAACCCAGCCCGCTGGGCGGCAGGACCCCAGCCCCGTGACTGGCAGCGAGGGACTACTTCTGGCATCTTCTCCCT a score=46.0 s hg17.chr17_random 1864569 4 + 2618010 CCTA s rn3.chr10 109939712 4 + 110733352 CTGA a score=21821.0 s hg17.chr17_random 1864640 246 + 2618010 atggcttgatctcngctcactgcaagctctgcctcccgggttcacgccattctcctgccntcaagctcccgagtagctgggactacagacgcccgccaccancgcctggctaattttttgtatttttagtagagacggggtttcactgtgttagccaggatggtctcgatctccagacctcgtgatccacccccctcggcctcccaaagttctgggattacaggcgtgagccgccgcgcccggccC s panTro1.chr19 81120375 244 + 82489036 Atggcttgatctccgctcactgcaagctccgcctcctgggttcacgccattctcctgcc-tcaggctcccgagtagctgggactacaggcgcccgccacca-cgcctggctaattttttgtatttttagtagagacggggtttcactgtgttagccaggatggtctcgatctccagacctcgtgatccacccccctcggcctcccaaagttctgggattacaggcgtgagccgccgcacccggccC a score=100.0 s hg17.chr17_random 1864885 1 + 2618010 C s danRer1.chr18 8428798 1 - 26817969 C a score=1836.0 s hg17.chr17_random 1864886 6 + 2618010 CCAGCT s panTro1.chr19 81120619 6 + 82489036 CCAGCT s canFam1.chr18 30331567 6 + 66173745 CCGGCT s danRer1.chr18 8428799 6 - 26817969 CCAGGG a score=3773.0 s hg17.chr17_random 1864892 15 + 2618010 CCCTCTTTATCCCTA s panTro1.chr19 81120625 15 + 82489036 CCCTCTTTATCCCTA s rn3.chr10 109939741 15 + 110733352 TCCTCCCTAAACCTC s canFam1.chr18 30331573 15 + 66173745 CCCACTTCATCAATA s danRer1.chr18 8428805 15 - 26817969 GCCTGCCTATCTCCC a score=56031.0 s hg17.chr17_random 1864907 206 + 2618010 GGACCCTGAGGCTCAGAGGGGCAGCTTCAG---GGGAGGACACCCCACTGGCCAGG------------------------------------ACGCCCCAGGCTCT-----GCTGCTCTGCCACTCAGCTGCCCTCGGAGGAGCGTA-CACACCCACCAGGA----CTGCATTGCCCCAGCTGTGCAGCCCCTGCCAGATGTGGGAGGCAGCTAGCTGCCCAGAGGCATGCCCCCCTGCC------AGCCACAGCGACC---Cc s panTro1.chr19 81120640 206 + 82489036 GGACCCTGAGGCTCAGAGGGGCAGCTTCAG---GGGAGGACACCCCACTGGCCAGG------------------------------------ACGCCCCAGGCTCT-----GCTGCTCTGCCACTCAGCTGCCCTCGGAGGAGCGTG-CACACCCACCAGGA----CTGCATTGCCCCAGCTGTGCAGCCCCTGCCAGATGTGGGAGGCAGCTAGCTGCCCAGAGGCATGCCCGCCTGCC------AGCCACAGCGACC---Cc s mm5.chr11 120205723 193 + 121648857 GAGGCCTTGGGCTTGGAGGCTTGGTTT------GGGGGAACAGGATGCTGTGTAGA-----------------------------------TTTTCTCCAGACTCC-----ACTATTCTGGTCCTCTGCAGCCTGAGGAGAGGTGCA-CACACTC-TGAGGA-------------CCTAGGTGTGCAACCTCTGCCAGATGTGGGGCG----TGGCTACCCAGAGGCATGCCCCTCACCC------AGCTCCACTGTCCCCACC s rn3.chr10 109939765 195 + 110733352 GAGGCCTTGGGCTCAGAGGCTTGGTTC------TGGGGAGCAGGATGCTCTGTAGA-----------------------------------TCTTCTCCAGACTCC-----ACTATTCTGGTTCTCCGCAGCCTGAGGAGAGGTGCA-CACACCCCCAAGGA-------------CCCAGGCACCCAACCTCTGCCAGATGTGGGGGG---GTGGCTACCCAGAGGCATGCTCCTCACCC------AGCTCCACTGTCCCTACC s canFam1.chr18 30331588 237 + 66173745 -GGCCAGGAGGCTCGG-GGGGCGGTTTGAGGGAAGCAGGGCAGCCCGCTCATCACAGCAGAGCCCAGCCGGGTCTCCTCGCTGATGGGGGTCCCCCCACAGGCCCT-----GCCGCTCTGA----CCGAAGTCCGCAGAGGAGTGCG-TGTGCCCACGAGGA-----CCCTTTGCCCCAGCTGTGTGGCCCCAGCCAGATGTGGGGGG----AGGCTGCTCAGAGGCATGCCCCCCGCCC------GGCCACGCTGCCCCCACC s danRer1.chr18 8428820 205 - 26817969 -------TGGACTTGCAGTATAGGCCCCAG---GGTGGCCCATGGCCCTCCACCTA-----------------------------------GGGCCCTCTGTCCCCAGCAAGCTACCCAGGGCTACAACTCTCTCCCTGGACTTGCAGTATAGGCCCCAGGGTGCCCCCTGGTCCTCCACCTACG-GGCCCCTGACCCAAGC----------AAGCTGCCCAGGGGTCCACCTCTCTCCCTGGACTTGCAATAGAGGCC---CC a score=12311.0 s hg17.chr17_random 1865113 23 + 2618010 tgctgctgttgctgctgctgctg s panTro1.chr19 81120846 23 + 82489036 tgctgctgttgctgctgctgctg s mm5.chr11 120205916 23 + 121648857 TGCTGCTGCTGCTGTTGGTGCTG s rn3.chr10 109939960 23 + 110733352 TGCTGCTGCTGCTGGTGGTGCTG s canFam1.chr18 30331825 17 + 66173745 TCCTCCTCCTGC------TGCTG a score=-306.0 s hg17.chr17_random 1865136 34 + 2618010 GCCTGCCAGGTGAGGACT------CACAGCACCCTCAGCA- s panTro1.chr19 81120869 34 + 82489036 GCCTGCCAGGTGAGGACT------CACAGCACCCTCAGCA- s mm5.chr11 120205939 37 + 121648857 TCATGTCTGGTGAGTGCC---GTGCACCCCACTCCCTGCA- s rn3.chr10 109939983 32 + 110733352 TCATGTCTGGTGAGTGCC---GTGCACCCCAC-----GCA- s canFam1.chr18 30331842 40 + 66173745 GCCTGCCAGGTGAGCCCCACTGCCCGCTCCCCCGCCAGCC- s galGal2.chrUn 67610486 23 - 165033910 GCCTGCC-----------------CACGGCCATCCTTGAG- s danRer1.chr18 8429038 36 - 26817969 GCCCTCCACATAGGGGCC-----TCTGACCCCAGACAGCTA a score=3000.0 s hg17.chr17_random 1865170 2 + 2618010 CC s panTro1.chr19 81120903 2 + 82489036 CC s rn3.chr10 109940015 2 + 110733352 CC s canFam1.chr18 30331882 2 + 66173745 CC s galGal2.chrUn 67610509 2 - 165033910 CC s danRer1.chr18 8429074 2 - 26817969 CC a score=4959.0 s hg17.chr17_random 1865172 8 + 2618010 CAGGGGCC s panTro1.chr19 81120905 8 + 82489036 CAGGGGCC s canFam1.chr18 30331884 8 + 66173745 CTGGGGCC s galGal2.chrUn 67610511 8 - 165033910 TCAGGGCC s danRer1.chr18 8429076 8 - 26817969 CAGGGGTC a score=-749.0 s hg17.chr17_random 1865180 3 + 2618010 NTC-- s panTro1.chr19 81120913 3 + 82489036 CTC-- s danRer1.chr18 8429084 3 - 26817969 --CAC a score=-420.0 s hg17.chr17_random 1865180 3 + 2618010 NTC-- s danRer1.chr18 8429084 3 - 26817969 --CAC a score=529.0 s hg17.chr17_random 1865183 27 + 2618010 -----CTGTGAGGACTGCACACTGATGGCTCt-- s panTro1.chr19 81120916 27 + 82489036 -----CTGTGAGGACTGCACACTGATGGCTCT-- s galGal2.chrUn 67610519 27 - 165033910 -----ATGGAATGCCTGCCCCTGCCTGACCCT-- s danRer1.chr18 8429087 32 - 26817969 CTCTCTCCCTAGAATTGCAGACTA--GGCCCCAG a score=39023.0 s hg17.chr17_random 1865210 539 + 2618010 ctgtctgcctgcctgcctgcctgcctgcctgcctgtctgtctgtctgcccgt------------ctgcctgcccatctgcctgtctgtctgcctgtccgtctgtctgtccatctgtccatctgcctatccat----ctgcctgcctgtctgcctgtccgtctgcctgtctgtctgcctgtccat-----------ctgtccatctgcctatccatctgcctgcctgtctgtcggcctgcctgcctgcctgtctgtctg-ctgcctgtctgtccgtctgc----ctgtctgcctgtccgtctgcct----------------gcctgtccgtctgcctgtccgtctgc--------ctgcctgcctgtctgtctgcctgcctgtctgcctgcctgtccgt----ctgcctgtccgtctgcctgcctgtctgc----ctgcctgtctgcctgtctg---------cccgtctgcctgtctgtctgcctgtccgtctgcctgtctgtccgtctgtccatctgcctatccatctgcctgcctatctgtctgtccgtctgcctgcctgtctgtctgcctgtctgcctgtctgtctgcctgtctgtccatctgcctat s panTro1.chr19 81120943 600 + 82489036 ctgcctgcctgcctgcctgtctgtctgcccgtctgcctgtctgtctgcccgtctgttggcctgcctgcctgcccgtctgcctgtctgcctgtccatctgcctgtctgtccatctgtccatctgcctatccatctgcctgcctgcctgtctgcctgtccgtctgcctgcccgtctgcctgtctgtgtgtctgtccactgtccatctgcctatccatctgcctgc----ctgtcggcctgcctgcctgcctgtctgtctgcctgcctgtctgtccgtctgcctgtctgtctgcctgtccgtctgcctgtctgcctgtgtgtccgtctgtccatctgtctgtccatctgcctgtccatctgcctgcctgtctgcctgcctgtccgtctgcctgcctgtccgtctgcctgcctgtccgtctgcctgcctgtctgcctgtctgcccgtctgcctgtctgcctgcctgtcccgtctgcctgtctgtctgcctgtccgtctgcctgtctgtccgtctgtccatctgcctatccatctg--------tctgtccgtctgcctgtctgcctgtctgtctgcctgtccgtctgcctgtctgtccatctgtccatctgcctgt a score=4770.0 s hg17.chr17_random 1865749 64 + 2618010 ccatctacctgcctgcctgtctgcctgtc-tgtctgcctgtctgtctgcctgcctgtctgtctgt s panTro1.chr19 81121543 60 + 82489036 ccat----ctgcctgtctgtctgcctgtc-tgtctgcttgtctgcctgcctgtccgtctgtctgt s canFam1.chr18 30331892 55 + 66173745 CCATCTG-CTGCCTGCTCCTCCGGCTGACGTGGCT--CGGTC---CCACCTGTCCCTTCAT---- a score=2772.0 s hg17.chr17_random 1865813 7 + 2618010 ctgtctg s panTro1.chr19 81121603 7 + 82489036 ctgtctg s mm5.chr11 120206013 7 + 121648857 CTCCCTG s rn3.chr10 109940060 7 + 110733352 CTCTCTG a score=-2928.0 s hg17.chr17_random 1865820 27 + 2618010 GTTGCTTGNTGCATGTGT-CCCCCAGCC------- s panTro1.chr19 81121610 26 + 82489036 GTTGCTTG-TGCATGTGT-CCCCCAGCC------- s mm5.chr11 120206020 26 + 121648857 GTCCCTTG-TCTACCTGT-TTCCCAGCC------- s rn3.chr10 109940067 26 + 110733352 GTTGCTTG-CCTACCTGT-TTCCCAGCC------- s canFam1.chr18 30331947 14 + 66173745 --------------CTGTCCCCCCAGCC------- s galGal2.chrUn 67610546 19 - 165033910 --------GGTGACCTCT-CTGGTGCCC------- s danRer1.chr18 8429119 21 - 26817969 -------------GTTGA-CCCTTGGCCCTCCACC a score=106722.0 s hg17.chr17_random 1865847 116 + 2618010 ACAGGTCCCCTCCGCTCAGGTGATGGACTTCCTGTTTGAGAAGTGGAAGCTCTACGGTGACCAGTGTCACCACAACCTGAGCCTGCTGCCCCCTCCCACGGGTGA------GCCC--CCCACC------------C s panTro1.chr19 81121636 116 + 82489036 ACAGGTCCCCTCCGCTCAGGTGATGGACTTCCTGTTTGAGAAGTGGAAGCTCTACGGTGACCAGTGTCACCACAACCTGAGCCTGCTGCCCCCTCCCACGGGTGA------GCCC--CCCACC------------C s mm5.chr11 120206046 124 + 121648857 AGAGGCACCCTCTGCCCAGGTAATGGACTTTTTGTTTGAGAAGTGGAAGCTCTATAGTGACCAATGCCACCACAACCTAAGCCTGCTGCCCCCACCTACTGGTGA------GTCCCACCCACCTACAC------AC s rn3.chr10 109940093 113 + 110733352 AAAGGCACCCTCTGCCCAGGTAATGGACTTTTTGTTTGAGAAGTGGAAGCTCTATAGTGACCAGTGCCACCACAACCTAAGCCTGCTGCCCCCACCTACTGGTGA------GTCC--CAC---------------C s canFam1.chr18 30331961 128 + 66173745 ACAGGCCTCTTCTGCCCAGGTGATGGACTTCCTGTTTGAGAAGTGGAAGCTCTATGGTGATCAATGTCTCTACAACCTGAGCCTGCTGCCCCCACCCACTGGTGA------GCCC--CCTGCCTCCCCTCCACGTC s galGal2.chrUn 67610565 122 - 165033910 TCAGGGCCCCTCTGCCCAGATCACGAATTTCCTCTTTGAGAGCTGGAAGGCTTACAGCGAGGAGTGCCACCGCAACATGAGCCGGATGCCCGCACCTACAGGTGAGCGTGGGCAC--CCCACA------------C s danRer1.chr3 23198485 116 + 31142523 ACAGGTGTCTTCTGCTGTATCCCTCAAAACTATGATGGAAAGATGGATGATGTACCGAGATGAATGTTTTCGAAATATGAGCAGAGAAGCACCGATGACAGGTGA------GCTG--CTGAGC------------C a score=1734.0 s hg17.chr17_random 1865963 40 + 2618010 AGAGCCTTTCAGCCTGTGCC----TGGCCTCAGCACTTCCTGAG s panTro1.chr19 81121752 40 + 82489036 AGAGCCTTTCAGCCTGTGCC----TGGCCTCAGCACTTCCTGAG s mm5.chr11 120206170 32 + 121648857 ACAGACT-----CCTGTGTC-------CTGTAGCCCTGCCTGGA s rn3.chr10 109940206 32 + 110733352 AAAGACT-----CCTGTGTC-------CTGACACCCCGCCTGGA s canFam1.chr18 30332089 29 + 66173745 CAGGTCT---------TGGC----TGGCC--AGCACCTACTGAG s galGal2.chrUn 67610687 38 - 165033910 GCTGCC------CTGGTGTCCTGGTGGGACAGGGACCCCCTGAG a score=6076.0 s hg17.chr17_random 1866003 208 + 2618010 TTCTCTTNCATGGGAAGGTTCCTGGGTGCTTATGCAGCCTTTGAGGACCCCGCCAAGGGGCCCTGTCATT--CCTCAGGCCCCCACCACCGTGGGCAGGTGAGGTAacgaggtaactgagccacagagctggggacttgcctcaggccgcagagccaggaaataacagaacggtggcattgccccagaaccggctgctgctgctgccccc s panTro1.chr19 81121792 207 + 82489036 TTCTCTT-CATGGGAAGGTTCCTGGGTGCTTATGCAGCCCTTGAGGACCCCGCCAAGGGGCCCTGTCATT--CCTCAGGCCCCCACCACCGTGGGCAGGTGAGGTAACGAGGTAACTGAGCCACAGAGCTGGGGACTTGCCCCAGGCTGCAGAGCCAGGAAATAACAGAACGGTGGCATTGCCCCAGAACCGGCTGCTGCTGCTGCCCCC s mm5.chr11 120206202 173 + 121648857 TGTGC---AGTAGGAGACCCTGTGGGAGTGTA------CTGTAAGGATGGCTTTATAATGCCCAGCCACT--GCCCCAGTTCC------------------AGG---CCAGGCGACTGACCTCCAGAGGTGGTGG-TTCCCTAAAGCTACATTGTCAGGAAGCAGTAGAAATGCAGAGCTGCCTC----CTAGTTGTCCCTGCTGTCCTC s rn3.chr10 109940238 160 + 110733352 GGTAC---ACTCAGAGACCTTATGGGGATGTA-----ATAGTAATGGCTGCTTTATAATGCCCAGCCACTTGCCCCCAGTTAC------------------AGA-----------CTGACCTCCAGAGGCAGTGGCTTCCCTAAGGCTGTATGGTCAGGAAACAGTAGAAATGCAGAACTGCCTCAGG-------------GCTGCCCTC s canFam1.chr18 30332118 68 + 66173745 CTCACGC-CCTGGGAG--------------------------------------------------------CTCCAGGCCCG-------GTGGGCA-GTGTGG-------------------------TAGGGG--------AGGCAGC----CCACGAAGC---------------CCACCCA------------------------- a score=6567.0 s hg17.chr17_random 1866211 65 + 2618010 aggcccAGATGGGTAATACCACCTACAGCCCCGTGGAGTTTTCAGTGGG--CAGACAGTGC------------CAGGGC s panTro1.chr19 81121999 65 + 82489036 AGGCCCAGATGGGTAATACCACCTACAGCCCCGTGGAGTTTTCAGTGGG--CAGACAGTGC------------CAGGGC s rn3.chr10 109940398 70 + 110733352 ATCCCCAGCCAGCTGATGTCTGCTGTCACC-------GCTCACACTGGG--CAGACAGTGAATAGGGACAGGGCAGGGC s canFam1.chr18 30332186 42 + 66173745 AGGCCCGGGTGGG-------------------GGGGAG------GTGGGCTCCAGCAGGGA------------CAGGAC a score=0.0 s hg17.chr17_random 1866276 12 + 2618010 GTGGAAGCTGGG a score=1602.0 s hg17.chr17_random 1866276 12 + 2618010 GTGGAAGCTGGG s panTro1.chr19 81122064 12 + 82489036 GTGGAAGGTGGG s rn3.chr10 109940468 12 + 110733352 AGAGAGACTGGG a score=27750.0 s hg17.chr17_random 1866288 427 + 2618010 ACCCAGGGGCCTGGGAGGGCTCGGGTGGAGAGTGTATATCATGGCCT---GGACACTTGGGGTGCAGGGAGAGGATAGGGCTGGAGGACTCACCCGGGAGGCAGTGCCTGGGTTCGGATGAGGGAGGCAGCCACCA--------------------------------NCTGGGCAGAGGGGGGCAGGTGTGGCAGCCTCCATTGGNGCAGAGGGAGCAGNATGTGGCAGCCACAGGTTTGGCGATGCACCTGGGAANGGATGAAAATGGCATTNGGGTTCAGCCCCCAGAGAGGGAGGTGCTGAGAGAAGGTCACNGAGAATGGGGNANCCNNNTGNNNNNNNNNNNNANNNTNNNNNNNNGGGGTCTNCCAAGGGAAGGTGTCCTNCAGAGNTGNANTTCAGGGCTGGNCTGGGCGTGCTAGCGGAGNCTNGTCCAGNGGAGGNGGATNNTCAGGTGAGG s panTro1.chr19 81122076 455 + 82489036 ACCCAGGGGCCTGGGAGGGCTCGGGTGGAGAGTGTATATCATGGCCT---GGACACTTGGGTTGCAGGGAGAGGATACGGCTGGAGGACTCACCCGGGAGGCAGTGCCTGGGTTCGGATGAGGGAGGCAGCCACCACTGGGCAGAAGGGGGCAGGTGTGGCAGCCACCACTGGGCAGAGGGGGGCAGGTGTGGCAGCCTCCACTGG-GCAGAGGGAGCAG-ATGTGGCAGCCACAGGTTTGGTGGTGCACCTGGGAA-GGATGAAAATGGCATTGGGGTTCAGCCCCCAGAGAGGGAGGTGCTGAGAGAAGGTCACGGAGAATGGGGGACCCCAGTGTGGGTTTGGGGCACATTTGAGATGGGGGGTCT-CCAAGGGAAGGTGTCCTGCAGAGCTGCAATTCAGGGCTGGGCTGGGCATGCTAGCGGAGGCTGGTCCAGGGGAGGTGGATGGTCAGGTGAGG s canFam1.chr18 30332228 275 + 66173745 ACCC-----CCT--------------------TCTATACCA-GTTCTGAGGGTCCCTTAGGGTATGGCAAGAGGTCGGGATGGGGGTAGTTGCCAGG------------------------GGGCGAGAGCCATCG-------------------------------------TCAGATGGGGGCAGG------GGCTTGCACTGG-GCAGAGGAAGGAGGGCGTTTGAGCCACAGAGGTCACGCTGGAGCCTGGAA-AGAAGCCACAG--ATTGGGGTGCAGCCCCCAGAGCGGGGAGCACTGCAAGGGGGCCACTGGGGAGAGGA-------------------------------------------CCGAGCTCGGGT---------------------GGGCTTG---GGGCACGTT---GGAGAC--------GGGAGGTGTGC------------ a score=9789.0 s hg17.chr17_random 1866715 59 + 2618010 AAGGTGGAGGTCAGATGGGNGAGGTGGAGGTCAAGTGGGGGAGGGAGCAGCCCAGGCCA s panTro1.chr19 81122531 59 + 82489036 AAGGTGGAGGTCAGATGGGGGAGGTGGAGGTCAAGTGGGGGAGGGAGCAGCCCAGGCCA s rn3.chr10 53646368 59 - 110733352 AAGATGGAGGCCAAAGGCAGGAAATGGAGGCCAGGGAGAAAGGGGAGCAGCAGAGCCCA s canFam1.chr18 30332503 43 + 66173745 GGGGAGGAGGCT----------GCTGGGGCCCCGGGAGAT------GTGGCAAAGTCTG a score=2574.0 s hg17.chr17_random 1866774 87 + 2618010 TGTCCTGGG-----CGAGGTGACG-GCCGAGCTCAGGCTTCCAGAGAGAGGAGAGAGGCNNNCNNANNNANNNCNNNNNNNNNNNNtnccctg s panTro1.chr19 81122590 87 + 82489036 TGTCCTGGG-----GGAGGTGACG-GCCGAGCTCAGGCTTCCAGAGAGAGGAGAGAGGCCTGCTGAGGGAGCCCCTTCTCCCAccctgccctg s canFam1.chr18 30332546 59 + 66173745 CGTGCTGGGGCACAGGGGGTGATGCGCAGGGC----ACCTCAGAGGGGACGACAGGGG------------------------------CCCAG a score=3218.0 s hg17.chr17_random 1866861 10 + 2618010 ccctgctctg s panTro1.chr19 81122677 10 + 82489036 ccctgctctg s mm5.chr11 120207159 10 + 121648857 CCCTCCTCCA s canFam1.chr18 30332605 10 + 66173745 CCCTGCTGAG a score=5716.0 s hg17.chr17_random 1866871 21 + 2618010 ccctgccctaccntaccctgc s panTro1.chr19 81122687 21 + 82489036 ccctgccctaccctaccctgc s mm5.chr11 120207169 17 + 121648857 TCCTCCTGCACCTT----CAC s rn3.chr10 109941075 17 + 110733352 TCCTCCTTCACCTT----TAC s canFam1.chr18 30332619 21 + 66173745 CCCGCCCCCACCCTGCCTTAC a score=208782.0 s hg17.chr17_random 1866892 113 + 2618010 AGAGCTGGTGTGNAACAGAACNTTCGACAAGTATTCCTGCTGGCCGGACACCCCCGCCAATACCACGGCCAACATCTCCTGCCCCTGGTACCTGCCTTGGCACCACAAAGGTA s panTro1.chr19 81122708 113 + 82489036 AGAGCTGGTGTGCAACAGAACCTTCGACAAGTATTCCTGCTGGCCGGACACCCCCGCCAATACCACGGCCAACATCTCCTGCCCCTGGTACCTGCCTTGGCACCACAAAGGTA s mm5.chr11 120207186 113 + 121648857 AGAGCTGGTCTGTAACAGAACCTTCGACAAGTACTCCTGCTGGCCTGACACCCCTCCCAACACCACTGCCAACATTTCCTGCCCCTGGTACCTACCTTGGTACCACAAAGGTA s rn3.chr10 109941092 113 + 110733352 AGAGCTGGTCTGCAACAGAACTTTCGACAAGTACTCCTGCTGGCCTGACACCCCTCCCAACACCACTGCCAACATTTCCTGCCCCTGGTACCTACCTTGGTACCACAAAGGTA s canFam1.chr18 30332640 113 + 66173745 AGAGCTGGTCTGCAACAGAACCTTCGACAAGTACTCCTGTTGGCCCGACACCCCTCCCAACACCACGGCCAACATCTCCTGCCCCTGGTACCTGCCCTGGCACCACAAAGGTA s galGal2.chrUn 67610824 113 - 165033910 AGAGCTGGTTTGTAACAGAACCTTTGACAAGTTCTCCTGCTGGCCCGACGCACTGCCGAACACCACCGTCAACGTCTCCTGCCCCTGGTTCCTGCCCTGGTACCAGAAAGGTA s fr1.chrUn 221962140 113 - 349519338 AGGCCTTGTGTGCAACAGGATGTTTGACAATTACGCCTGCTGGCCCGACGGACTCCCCAATACCACCGTCAGCGTGCCGTGCCCCTGGTATCTTCCTTGGCACCATCAAGGTA s danRer1.chr1 1575197 113 - 40858791 AGGTCTGGTGTGCAACCGTACGTTCGATCAGTATGTGTGCTGGCCTGATGGACTGCCGGGCACCACAGTTAACGTGTCCTGCCCCTGGTATCTACCCTGGTACAGTAAAGGTA a score=-37746.0 s hg17.chr17_random 1867005 75 + 2618010 CCCATAGAG----GG---GAGGAACTG------TGGGGGGGGCGG---------------------------------------GCCCAGGGT----------------GGG-GCTGACNCCCA--------------------------NGCCTCCCCCNCNACNACNC---- s panTro1.chr19 81122821 68 + 82489036 CCCATAGAG----GG---GAGGAACTG------TGGGAGGGGCGG---------------------------------------GCCCGGGGT----------------GGG-GCTGACCCC----------------------------AGCCTCCCT-----CCACAC---- s mm5.chr11 120207299 69 + 121648857 ACAGTGGAA----GGCCTGGGAGGCTG------AGGGGGTG--GA---------------------------------------GCCTAGGAG----------------TGG-GCTGACCAG----------------------------AGCTTGCAC-----CCATGT---- s rn3.chr10 109941205 73 + 110733352 ACGG-GGTA----GT---GAGTGCCTGGGAGGCTGAGGGTGCAAA---------------------------------------GTCTGGGAG----------------TGG-GCTGACCAG----------------------------AGCTTACAC-----CCATGT---- s canFam1.chr18 30332753 62 + 66173745 ACTCCGGGG----AG---GTGGGGGAG------GCTGAGGGCCCG---------------------------------------GCTGGGGGT----------------CGGAGCTGACTGG-----------------------------GCTGCCCC--------------- s galGal2.chrUn 67610937 161 - 165033910 ACGGCAGGGCACAGG---GTGGGATGG-----CTGAGCGGGGCAGGGCTGTGCACGCGTGCACACCTCCGTGCGGGTGCACGCTGCTGCGGGTGCTGCTCCGTGTCCCCTGG-GCTGGCGTGCAGAGCCCAGCTGTGTACCCGTGTCTGCAGCTGCCCCATCACCCTCCT---- s fr1.chrUn 221962253 48 - 349519338 -------------GG----------------------------AA---------------------------------------ATCTGTGGA----------------TGC-AATTACCCCCTG-------------------------AACCTCCTT----TCCAGGAAATC a score=475.0 s hg17.chr17_random 1867080 2 + 2618010 NC s panTro1.chr19 81122889 2 + 82489036 CC s mm5.chr11 120207368 1 + 121648857 -C s rn3.chr10 109941278 1 + 110733352 -C s canFam1.chr18 30332815 1 + 66173745 -T s galGal2.chrUn 67611098 2 - 165033910 CC a score=73364.0 s hg17.chr17_random 1867082 82 + 2618010 C----CAGTGCAACACCGCNTTCGTGTTCAAGAGATGCGGGCCCGACGGTCAGTGGGTG-----CGTGGACCCCGGGGGCAGCCTTGGCGT s panTro1.chr19 81122891 81 + 82489036 C----CAGTGCAACACCGC-TTCGTGTTCAAGAGATGCGGGCCCGACGGTCAGTGGGTG-----CGTGGACCCCGGGGGCAGCCTTGGCGT s mm5.chr11 120207369 81 + 121648857 C----CAGTGCAGCACCGC-CTAGTGTTCAAGAGGTGTGGGCCCGATGGGCAGTGGGTT-----CGAGGGCCACGGGGGCAGCCGTGGCGC s rn3.chr10 109941279 81 + 110733352 C----CAGTGCAGCACCGC-CTAGTGTTCAAGAGGTGTGGGCCTGATGGGCAGTGGGTT-----CGAGGGCCACGGGGGCAGTCATGGCGC s canFam1.chr18 30332816 81 + 66173745 C----CAGTGCAGCACCGC-CTCGTCTTCAAGAAGTGCGGGCCCGATGGGCAGTGGGTA-----CGCGGGCCCCGGGGGCAGTCGTGGAGA s galGal2.chrUn 67611100 85 - 165033910 CCATGCAGTGAAGCACAGG-TACGTCTTCAAGACATGCGGGCCGGACGGGCAGTGGGTG-----ACAGGCCCCAAGGGGCAGTCCCTGCGG s fr1.chrUn 221962337 78 - 349519338 ----gCAGTTCAGCATGGC-GTGCTGTATCAGGAATGTGATGCAACTGGCCAGTGGGTGACAGACAAGAACACCAGTGAGTGT-------- a score=18244.0 s hg17.chr17_random 1867164 65 + 2618010 GATGCCTCCCA-GTGCCAGATGGATGGCGAGGAGATTGAGGTCCAGGTCAG---TGGGCGGCAGGCAGG s mm5.chr11 120207450 68 + 121648857 AACGCCTCCCA-ATGTCAGTTGGATGATGAAGAGATCGAGGTCCAGGTCAGCTCTGGAGGGTATGGGGT s rn3.chr10 109941360 68 + 110733352 GACGCCTCCCA-ATGTCAGATGGATGATGACGAGATCGAGGTCCAGGTCAGCTCTGAAGGGTGTGGGGT s canFam1.chr18 30332897 55 + 66173745 AACGCCTCCCA-GTGCCAGCTGGACGGTCAGGAGATTGAAGTCCAGGTC-----CGCAggg-------- s galGal2.chrUn 67611185 61 - 165033910 GATGCCACGCA-GTGCCAGATCGACGCGGAGGACCTGGAGGCACACGTGGG---CAGCGGGCAGG---- s fr1.chrUn 221962415 61 - 349519338 ---GATTCCAATGTACCACCTCG--GGTAAGAAACCCACGATTCAGATCTC---TGCATGGAAGTGATT a score=-13295.0 s hg17.chr17_random 1867229 62 + 2618010 ---------CGCGGTGGGG------CTGGATGGGAAC-GGGCATGGGGGCCCCTG----CCTGGC-CCTCACAGGCCACTGTA---- s mm5.chr11 120207523 59 + 121648857 ---------CACAGCGGGG------CTGTGTGGGGCCAGGGGATACGG--CACTG----CCCAGC-CCCACTCGGCCTCTG------ s rn3.chr10 109941433 59 + 110733352 ---------TGCCATGGGG------TTGCGTGGGGCCAGGGGATATGG--TACTG----CCCAGC-CCCACTCCACCTCTG------ s canFam1.chr18 30332952 60 + 66173745 ----------gcgccgggg------ccgg--ggggccggggggcgggT--GCCTGGCCCCCCAGA-CCTGACCTGCCACTC------ s galGal2.chrUn 161872286 58 + 165033910 ---------CGGGGTGGGGGCACCTCAGGGTGCGTGGTGGGCAGCGGG--TGCTGACGGCGCGGG-GCTC----------------- s fr1.chrUn 221962476 68 - 349519338 TCATATTTGATTTGAGGAG------CAGAGTGC-----GGGTACAAGG--TTAAA----TCTGACAACTAACCCGTGTTTT--TGTA a score=3628.0 s hg17.chr17_random 1867291 5 + 2618010 ---ACTCG s panTro1.chr19 81123144 5 + 82489036 ---ACTCG s mm5.chr11 120207582 5 + 121648857 ---GTTTG s rn3.chr10 109941492 5 + 110733352 ---GTTTG s canFam1.chr18 30333014 5 + 66173745 ---CTTTG s galGal2.chrUn 161872344 5 + 165033910 ---GCTTG s fr1.chrUn 221962544 8 - 349519338 TTTTTTTG a score=118300.0 s hg17.chr17_random 1867296 129 + 2618010 CAGAAGGAGGTGGCCAAGATGTACAGCAGCTTCCAGGTGATGTACACAGTGGGCTACAGCCTGTCCCTGGGGGCCCTGCTCCTCGCCTTGGCCATCCTGGGGGGCCTCAGGTA---------GGATTCC-------GCCA----------GCGCC s panTro1.chr19 81123149 129 + 82489036 CAGAAGGAGGTGGCCAAGATGTACAGCAGCTTCCATGTGATGTACACAGTGGGCTACAGCCTGTCCCTGGGGGCCCTGCTCCTCGCCTTGGCCATCCTGGGGGGCCTCAGGTA---------GGATTCC-------GCCA----------GCGCC s mm5.chr11 120207587 139 + 121648857 CAGAAGGGGGTGGCCAAGATGTATAGCAGCCAGCAGGTGATGTACACCGTGGGCTACAGTCTGTCCCTGGGGGCCTTGCTCCTTGCGCTGGTCATCCTGCTGGGCCTCAGGTACATTGGTGTGGCTCCT------AGCTA----------ATACC s rn3.chr10 109941497 139 + 110733352 CAGAAGGGGGTAGCCAAGATGTATAGCAGCTACCAGGTGATGTACACTGTGGGCTACAGTCTGTCCCTGGGGGCCTTGCTCCTGGCGCTGGTCATCCTGCTGGGCCTCAGGTACACTGCTGTCGCTCCT------AGCTA----------ATACC s canFam1.chr18 30333019 136 + 66173745 TAGAAGGAAGTGGCCAAGATGTACAGCAGCTTCCAGGTGATGTACACGGTGGGGTACTCCCTCTCCCTGGGCGCCCTGCTCCTGGCCCTGGTGGTCCTGCTGGGCCTCAGGTA---------GGCTGCTCGGCCTGGGCA----------CGGCC s galGal2.chrUn 161872349 140 + 165033910 CAGGAGGGCGCCCGCAGGCTGATGGTGAGCTTCAAAGTGCTGTACACGGTGGGCTACGCGCTGTCCCTCCTCACCCTCGTCTCCGCTCTGCTCGTCCTCACCGTCTTCAGGTA---------GGAGCAG------GGCTGTGGGCGCAGCACGCC s fr1.chrUn 221962552 122 - 349519338 CAG-----------CCATAT-TATGGTCACATTCAGATCATGTACACAGTGGGCTATTCCCTGTCACTGGTGGCCCTGGTGTTGGCACTTGGCATCCTTATATTTTTCAGGTA---------AAATCAG--AGAGGGACA----------TAAAC s danRer1.chr1 1576139 129 - 40858791 CAGAAGCAGTACGGTCAGATCCTCAGTAAGTTCAGAGCCATGTACACAGTGGGCTACTCTCTGTCTCTGGCTGCGCTCACTCTCGCTCTGGGAATATTGGTCAGCTTCAGGTA----------ACTACC------AGCCA----------ACATC a score=1997.0 s hg17.chr17_random 1867425 34 + 2618010 CGGGGCGGC------CGCAGA-GGACAGGGAGGAGGACGGG s panTro1.chr19 81123278 34 + 82489036 CGGGGCGGC------CGCAGA-GGACAGGGAGGAGGACGGG s mm5.chr11 120207726 38 + 121648857 CAGTGTGGTGAGGGGGGTAGA-GGACAGGGC--AGGAGTGG s rn3.chr10 109941636 39 + 110733352 CAGTGTGGTGAGGGGGGCAGAGGGACGGGGC--AGGAGTGG s canFam1.chr18 30333155 28 + 66173745 CCCTGCGGT-------------GGGCAGGGCGGCGGGCAGC s galGal2.chrUn 161872489 27 + 165033910 CCGGGCGCA-------GCGAT-GGACG------AGGGGTGC s fr1.chrUn 221962674 28 - 349519338 ACAAGCAAT-------------GAACACAGTAGAGGATTGG a score=-749.0 s hg17.chr17_random 1867459 19 + 2618010 CGCTGACTGGCTGTG------------CCCA s panTro1.chr19 81123312 19 + 82489036 CGCTGACTGGCTGTG------------CCCA s mm5.chr11 120207764 18 + 121648857 TGCTGATACGCTGT-------------CACA s rn3.chr10 109941675 18 + 110733352 TGCTGAGACATCGT-------------CATA s canFam1.chr18 30333183 19 + 66173745 CACTGACCCCCGGTC------------CCCG s galGal2.chrUn 161872516 31 + 165033910 CCCCGCCGCCCCCTGACCCCACGGCTCTCCC a score=138330.0 s hg17.chr17_random 1867478 108 + 2618010 CAGCAAGCTGCACTGCACCCGCAATGCCATCCACGCGAATCTGTTTGCGTCCNTTCGTGCTGAAAGCCAGCTCCGTGCTGGTCATTGATGGGCTGCTCAGGACCCGCT s panTro1.chr19 81123331 107 + 82489036 CAGCAAGCTGCACTGCACCCGCAATGCCATCCACGCGAATCTGTTTGCGTCC-TTCGTGCTGAAAGCCAGCTCCGTGCTGGTCATTGATGGGCTGCTCAGGACCCGCT s mm5.chr11 120207782 107 + 121648857 TAGGAAGCTGCACTGCACCCGAAACTACATCCATGGGAACCTGTTTGCGTCC-TTTGTGCTCAAGGCTGGCTCTGTGTTGGTCATCGATTGGCTGCTGAAGACACGGT s rn3.chr10 109941693 107 + 110733352 TAGGAAGCTGCACTGCACCCGGAACTACATCCACGGGAACCTGTTCGCGTCC-TTCGTGCTCAAGGCTGGCTCTGTGCTGGTCATTGATTGGCTGCTCAAGACACGCT s canFam1.chr18 30333202 107 + 66173745 CAGCAAGCTGCGCTGCACCCGGAACTACATCCACGCCAACCTGTTCGCCTCG-TTCGTGCTCAAGGCGGGCTCCGTGCTGGTCATCGACGCGCTGCTCAAGACCCGCT s galGal2.chrUn 161872547 107 + 165033910 CAGGAAGCTGCACTGCACCAGGAATTACATCCACGCCAACCTGTTTGCTTCC-TTCGGGCTGCGGGCCACCTCGGTGATGGTGAAGGTCGCGCTGCTGGAGAGGCGCT s fr1.chrUn 221962862 102 - 349519338 CAGGAAACTACACTGCATGAGGAACAACATCCACATGAATCTTTTCGCTTCC-TTCATTCTGCGTGCACTGTCTGTCCTCATTAAGGACGCCCTCATGGACAC----- s danRer1.chr1 1576532 105 - 40858791 CAGAAAGCTGCACTGCATGAGGAACAACATCCACATGAACCTGTTCGGCTCC-TTCATGGTTCGAGCGCTTTCAATCCTCATCAAAGACACGCTGCT--GGACCAGAT a score=45732.0 s hg17.chr17_random 1867586 58 + 2618010 ACAGCCAGAAAAT--TGGCGACGACCTCAGTGTCAGCACCTGGCTCAGTGATGGAGTGAG s panTro1.chr19 81123438 58 + 82489036 ACAGCCAGAAGAT--TGGCGACGACCTCAGTGTCAGCACCTGGCTCAGTGATGGAGTGAG s mm5.chr11 120207889 58 + 121648857 ACAGCCAGAAGAT--TGGCGATGACCTCAGTGTGAGCGTCTGGCTCAGTGACGGGGTGAG s rn3.chr10 109941800 58 + 110733352 ATAGCCAGAAGAT--TGGAGATGACCTCAGTGTGAGCGTCTGGCTCAGTGATGGGGTGAG s canFam1.chr18 30333309 58 + 66173745 ACAGCCAGAAGAT--CGGCGACGACCTCAGCGTGAGCGTCTGGCTCAGCAACGGGGTGAG s galGal2.chrUn 161872654 58 + 165033910 GGGGCGCGGAGGTGCTGCAGGTGGCTGACTGGCAGGCACT--GCTCAGACAAGAAGTGGG s fr1.chrUn 221962964 48 - 349519338 -CAACGAAAAAAT--TTCGCACTG-------GTCAACAAC--GGTCAACAACGAGGTGAG a score=6038.0 s hg17.chr17_random 1867644 83 + 2618010 C-CCCCCTC-GGCGG--CCCCAGGCAGGTGGGTGNGGTGGGCAGCCAGGCAG----------GTGGCCANGTAGCCGCGCTCACACTGCACCTG-TAC s panTro1.chr19 81123496 82 + 82489036 C-CCCCCTC-GGCGG--CCCCAGGCAGGCGGGTG-GGTGGGCAGCCAGGCAG----------GTGGCCACGTAGCCGCGCTCACACTGCACCTG-TAC s mm5.chr11 120207947 73 + 121648857 C-CCAGATCTGACTGCTCCCCAGCCCG--------TGTAGGGTGTCGGGGTG--------TCGTGG-------ACTCCACTCATGCCTCACCTT-GCT s rn3.chr10 109941858 77 + 110733352 C-CCAGATCTAACTGCTCCCTAGCCTG--------TGTAGGGCGGCGGGCAG----GGTGTCGTGG-------GCTCCACTCATGCCTCACCTT-GCT s canFam1.chr18 30333367 73 + 66173745 CACCCCCTT--------CCCCAGCC----------TCTGGGGCCCAGGGTGGCAGGGGCCGCGCGG-------CCCGAGCTCATGCTGCCCCTGCGGC a score=229501.0 s hg17.chr17_random 1867727 172 + 2618010 CAGGCGGTGGCTGGCTGCCGTGTGGCCGCGGTGTTCATGCAATATGGCATCGTGGCCAACTACTGCTGGCTGCTGGTGGAGGGCCTGTACCTGCACAACNTGCTGGGCCTGGCCACCCTCCCCGAGAGGAGCTTCTTCAGCCTCTACCTGGGCATCGGCTGGGGTGAGTGGG s panTro1.chr19 81123578 172 + 82489036 CAGGCGGTGGCTGGCTGCCGTGTGGCCGCGGTGTTCATGCAATATGGCATCGTGGCCAACTACTGCTGGCTGCTGGTGGAGGGCCTGTACCTGCACAACCTGCTGGGCCTGGCCACCCTCCCCGAGAGGAGCTTCTTCAGCCTCTACCTGGGCATCGGCTGGGGTGAGTGGG s mm5.chr11 120208020 172 + 121648857 CAGGCGATGGCCGGCTGCAGAGTGGCCACAGTGATCATGCAGTACGGCATCATAGCCAACTATTGCTGGTTGCTGGTAGAGGGCGTGTACCTGTACAGCCTGCTGAGCCTTGCCACCTTCTCTGAGAGGAGCTTCTTTTCCCTCTACCTGGGCATTGGCTGGGGTGAGTAGG s rn3.chr10 109941935 172 + 110733352 CAGGCGGTGGCTGGCTGCAGAGTGGCCACAGTGATCATGCAGTACGGCATCATAGCCAACTACTGCTGGTTGCTGGTGGAGGGTGTGTACCTGTACAGCCTGCTGAGCATCACCACCTTCTCGGAGAAGAGCTTCTTCTCCCTCTATCTGTGCATCGGCTGGGGTGAGTAGG s canFam1.chr18 30333440 172 + 66173745 CAGGCGGTGGCCGGCTGCCGGGTGGCCGCGGTGTTCATGCAGTACGGCGTGGTGGCCAACTACTGCTGGCTGCTGGTGGAGGGCGTGTACCTGCACAGCCTGCTGGGCCGCGCCACCTTCCCCGAGCGGAGCTTCTTCCCCCTGTACTTGGCCGTCGGCTGGGGTGAGTGGG s fr1.chrUn 221963569 171 - 349519338 CAGACGATGATTTGCTGCCGCATCGCCTTCGTGATGATGCAGTACAGCATCATGGCCAACAGCTACTGGCTGTTGGTGGAAGGCATCTACCTCCACAAC-TCCTGGTCATCACCGTGTTTACCGAGAGGAACTACTTCAAAATCTACCTGTGCATTGGCTGGGGTGAGCTAG s danRer1.chr1 1577112 172 - 40858791 CAGACGGTGGTGGGCTGTCGGTCAGCGATGGTGATGATGCAGTACAGTGTGATGGCCAATAACTGCTGGCTGCTGGTGGAGGGTCTGTATCTGCACAGTCTGCTGGTCACCACCGTCTTCTCCGAGAGGAACTACTTCTGCATTTACCTGTGCATCGGCTGGGGTGAGTGAG a score=-49.0 s hg17.chr17_random 1867899 6 + 2618010 CTGGCA s panTro1.chr19 81123750 6 + 82489036 CTGGCA s mm5.chr11 120208192 6 + 121648857 CTCTTG s rn3.chr10 109942107 6 + 110733352 CTTGTG s canFam1.chr18 30333612 6 + 66173745 CTGCGG s fr1.chrUn 221963740 6 - 349519338 CCCCCC a score=427.0 s hg17.chr17_random 1867905 2 + 2618010 TG s panTro1.chr19 81123756 2 + 82489036 TG s mm5.chr11 120208198 2 + 121648857 GG s rn3.chr10 109942113 2 + 110733352 GG s canFam1.chr18 30333618 2 + 66173745 AG a score=2844.0 s hg17.chr17_random 1867907 56 + 2618010 AGAGGGGGTTAAGGCAGGCTGACCAAGCCTT-------TGGGACCANCAGCTGCTGCC-CCCCA s panTro1.chr19 81123758 55 + 82489036 AGAGGGGGTTAAGGCAGGCTGACCAAGCCTT-------TGGGACCA-CAGCTGCTGCC-CCCCA s mm5.chr11 120208200 54 + 121648857 GGCAGTGGGGAAGG-AGGCTAGCCAGGGCTG-------TAGAACCA-CAGCTGCTGCT-TCCCA s rn3.chr10 109942115 51 + 110733352 GGATAGGG--AAGG-AAGCTAA-CAGGGCCG-------TGGGATAA-CAACTGCTGCT-TCCCA s canFam1.chr18 30333620 60 + 66173745 GGCCGGGGGCGGGG--GGGTGG-CGGGCATGGGGAGGCGGGGACCA-CAGCTGCCCCCTCCCCG s fr1.chrUn 221963814 31 - 349519338 --------ACAGTG-TATTTAG----------------ACGGCCCT-CATTT-------CTTCC a score=82763.0 s hg17.chr17_random 1867963 73 + 2618010 CAGGTGCCCCCATGCTGTTCGTCGTCCCCTGGGCAGTGGTCAAGTGTCTGTTCGAGAACGTCCAGTGAGTATG s panTro1.chr19 81123813 73 + 82489036 CAGGTGCCCCCATGCTGTTCGTCGTCCCCTGGGCAGTGGTCAAATGTCTGTTCGAGAACGTCCAGTGAGTATG s mm5.chr11 120208254 73 + 121648857 CAGGTGCGCCCCTGCTGTTTGTCATCCCCTGGGTGGTGGTCAAGTGTCTGTTTGAGAATGTTCAGTGAGTATG s rn3.chr10 109942166 73 + 110733352 CAGGATCTCCCCTGCTGTTTGTCATCCCCTGGGTGGTGGTCAAGTGTCTGTTTGAGAATGTCCAGTGAGTATG s canFam1.chr18 30333680 73 + 66173745 CAGGCGCCCCCGTGCTCTTTGTCGTCCCCTGGGCCGTGGTCAAGTGTCTGTTTGAGAACATCCAGTGAGTACG s fr1.chrUn 221963845 73 - 349519338 CAGGAATGCCGCTGCTGTTCCTCGTGCCCTGGGTGATGGCTAAATACTGGTATGAAAACCACATGTAAGTCTG s danRer1.chr1 1578326 73 - 40858791 CAGGTGCGCCGCTCATATTTGTGCTGCCGTGGATGACAGTCAAATACCTGTATGAAAATGAAGAGTACGTCTG a score=-4834.0 s hg17.chr17_random 1868036 6 + 2618010 AGC-----GGC s panTro1.chr19 81123886 6 + 82489036 AGC-----GGC s mm5.chr11 120208327 2 + 121648857 AG--------- s rn3.chr10 109942239 11 + 110733352 AGCTAATAGGG s canFam1.chr18 30333753 3 + 66173745 AGC-------- s fr1.chrUn 221963918 6 - 349519338 CAT-----GGC a score=1466.0 s hg17.chr17_random 1868042 227 + 2618010 TGGACAGCCTGGGG-AGGGACCGGGGGGCTGGGGTG----------CGGCGCTCTGGCCTGAGGCAG----GGAGGGG----CCGG--GGATGAGCCTGGTGCCTGGGGAGGGGG--------------------------------------------------------TCATTTGTGACCTTCTCCCTTCCTTTTCTGAGACCNCGAATTAGATCCTGGCAAAATCGGGACGGGGGTGCTGAGGGGCGGAGGGNGCTGGGGGCTGTGCCCCNAGTATGTGAGTGGCCTGGCCTCGNCANGN s panTro1.chr19 81123892 224 + 82489036 TGGACAGCCTGGGGGAGGGACCGGGGGACTGGGGTG----------CGGGGCTCTGGCCTGAGGCAG----GGAGGGG----CCGG--GGATGAGCCTGGTGCCTGGGGAGGGGG--------------------------------------------------------TCATTTGTGACCTTCTCCCTTCCTTTTCTGAGACC-CGAATTAGATCCTGGCAAAATCGGGACGGGGGTGCTGAGGGGTGGAGGG-GCTGGGGGCTGTGCCCCCAGTATGTGAGTGGCCTGGCCTCGC--AGG s mm5.chr11 120208329 119 + 121648857 --------CTGGTA-------CAGTGGGCTGGAGCA----------GTTGGTGCTGCCTTTGTAAAG------------------------TGACCCTGGGGGCTGGGGAGGGG--------------------------------------------------------------------------------------------------------------------------------CAGGGGCTGGAGAG------TGGCATCCCCCCCAGTAAGGGAGCAACTGTTCCCTGC--AGG s rn3.chr10 109942250 208 + 110733352 TGGGCTGGTTGATG-------CTGGTCTTTGTAAAG----------TGACCCTGGGGACAGGGGCAGGA--GGTGAGG----CTAGAAGTGTGAATCCAGTGTCTGGACCTGGGG-------------------------------------------------------TTCAGTGAAGACTCTGTCCTTTCCTTTCCAGAGGCA-CTCAGTAAATCCCAGC-AGATAGGGAGGGG-----CAAGGAACAGAGAG---------CTGCATCCCCACTAAGTGAGCAACTGGTCCCTGC--AGG s canFam1.chr18 30333756 267 + 66173745 ----TGAGTCGGGG-AGGGCCCGGGGCGCCCAAGGGCTCACCCCTCCTGGCCGCCGGCTCCGGTGGGTGCTGGCGGGGGGCTCTGG--GGAGGAGCCGGGCACCAGGGGACGGGGGTCCTCCAGCCAGAGGACGCACTGGGTGGGGAAGCGACGCTGCCCCAGGACGGGGCTGGTTTCTGAGTGCCTCCCCTCGGTTCCCAAGGCC-CTGATTGGACCCCCTCAGTGT--------------CGGGGGGTGGGGGG-------------TCCGGCAGGCTGTGAGCGGGCCCGCCCTGC--AGG a score=18530.0 s hg17.chr17_random 1868269 18 + 2618010 TGCTGGACCAGCAATGAC s panTro1.chr19 81124116 18 + 82489036 TGCTGGACCAGCAATGAC s mm5.chr11 120208448 18 + 121648857 TGCTGGACCAGCAATGAC s rn3.chr10 109942458 18 + 110733352 TGCTGGACCAGCAATGAC s canFam1.chr18 30334023 18 + 66173745 TGCTGGACCAGCAACGAC s danRer1.chr1 1582747 18 - 40858791 TGCTGGGAGAGGAATATG a score=64269.0 s hg17.chr17_random 1868287 55 + 2618010 AACATGGGCTTCTGGTGGATCCTGCGGTTCCCCGTCTTCCTGGCCATCCTGGTGA s panTro1.chr19 81124134 55 + 82489036 AACATGGGCTTCTGGTGGATCCTGCGGTTCCCCGTCTTCCTGGCCATCCTGGTGA s mm5.chr11 120208466 55 + 121648857 AACATGGGATTCTGGTGGATCCTGCGTATTCCTGTCTTCCTGGCCTTACTGGTGA s rn3.chr10 109942476 55 + 110733352 AATATGGGATTCTGGTGGATCCTGCGTATCCCTGTACTCCTGGCCATACTGGTGA s canFam1.chr18 30334041 55 + 66173745 AACATGGGGTTCTGGTGGATCCTACGCCTGCCGGTCTTCCTGGCGATCCTGGTGA s fr1.chrUn 221964139 55 - 349519338 AGCATGAATATCTGGTGGATCATCCGTTCTCTCATCCTGCTGGCAGTTGTGGTAA s danRer1.chr1 1582765 55 - 40858791 AACATGGGCTACTGGTGGATCATCCGCTCTCCTATTCTCTTCGCTTATCTGGTAA a score=4704.0 s hg17.chr17_random 1868342 6 + 2618010 GGAAAT s panTro1.chr19 81124189 6 + 82489036 GGAAAT s mm5.chr11 120208521 6 + 121648857 GGAAAC s rn3.chr10 109942531 6 + 110733352 GGAAAC s canFam1.chr18 30334096 6 + 66173745 GGCGAT s danRer1.chr1 1582820 6 - 40858791 GAGAAT a score=39833.0 s hg17.chr17_random 1868348 285 + 2618010 G--------------AAGAGCCAGGAACGCAC------------------CCCAGGCCCCTCCTCCCTTGGCGTCCTGAGG---CTGCCCCAGGAGACAGCAG-CATCCTGTCTGA-GAGCGCTGGGAGGGAG---CCGGCACCCAGACAGGACACCAGGACACTGGCCAGCACCCTGGACACTGAGCCAGGCTGTTCCTCCCTGGCTGTGTGCCCACCAGCCCCAGGGCTATGTGGCCCAGGGCCTATCTTGCTGCCAGGCCCACCTGCAGGAGGGTCA-GGTGGGGCCTTCCAAGGGCACAGAGCTGTTCCCTGGGGCTCGGGA s panTro1.chr19 81124195 285 + 82489036 G--------------AAGAGCCAGGAGCGCAC------------------CCCAGGCCCCTCCTCCCTTGGCGTCCTGAGG---CTGCCCCAGGAGACAGCAG-CATCCTGTCTGA-GAGTGCTGGGAGGGAG---CCGGCACCCAGACAGGACACCAGGACACTGGCCAGCACCCTGGACACTGAGCCAGGCTGTTCCTCCCTGGCTGTGTGCCCACCAGCCCCAGGGCTATGTGGCCCAGGGCCTATCTTGCTGCCAGGCCCACCTGCAGGAGGGTCA-GGTGGGGCCTTCCAAGGGCACAGAGCTGTCCCCTGGGGCTCGGGA s mm5.chr11 120208527 275 + 121648857 A-GGCCCCCGTTGCCATCAGCAGGGAAAGGGCCACCACTGGCCTGGCTCTCCTAGGCCCTTCCTTCCTCAGCCTTCTGAGG---CTAA--------------------------GA-GGATGGAGGGTGGGCAATTCCAGCACTCACTCAGG-----AGGATGT------ACATGCTGGGCTGTGGGTCAGGTTGCCCATCCTTGGCTGAATGCCTGCCAGTCCCTGGGCCATGT-ATCCAGGACTCACCTGGCAG-CAGCCTCACCTGTATCAGGGGCATAGAAGGGCCATGGTAGGACATAG-GAAGTTCTC--AGGCTC---- s rn3.chr10 109942537 253 + 110733352 AAAGCCCCTGCTGCCATCAGCAAGGAAAGGGT---CACTGGTCTGGCTCCCCCAGGTCCTTCCTTCATCAGCCTTCTGAGG---CTAA-----GGGAAGAATA-CATTCTACCCAACGGATGGAGGGTGGGCAATTCCAGCAC---------------------------TCACTCAAGAAGCTGTAATACGCTG----------------------CCAGCCCCAGGGCCCTGT-GCCCAGGGCTCACCTGGCAG-CAGCCTTGCTTGTAGCAGGGACA-TCTGAGGGCCATGTAGGACACAG-GAAGTTCTC--GGGC------ s canFam1.chr18 30334102 230 + 66173745 GGGGCACCTGCTGGCCTCGGGAGGGTCTGACT------------------CC---GCCCTGCCTTCCTTGTCGGCCTGCGGGGCCTGC----GGAGATGGATGACATCCTGCCTG--GGACAGGGAGGGGGCC---CTGGCACCGAGCCGGG------------------ACA---------------CAGGCCG---GTCCCTGGCTGGGTGCCCAGCGGCCCCGGAGCCCTGC-GAGTGTGGCCCATGCGGCTGCCAGGTCCAGCTACGGGAGGGTCC-AGGGGGCCC------GGGCACCG---------------------- a score=8000.0 s hg17.chr17_random 1868633 17 + 2618010 TGCCCCTGACTCGCACC s panTro1.chr19 81124480 17 + 82489036 TGCCCCTGACTCGCACC s mm5.chr11 120208802 17 + 121648857 TGCCCTCGACGTTTGCC s rn3.chr10 109942790 17 + 110733352 TGCCCTTGATGTTTGTC s canFam1.chr18 30334332 14 + 66173745 ---CCCTGAGCCGTGCC s danRer1.chr1 1585006 17 - 40858791 TGTCTCTGGGTCTCTCT a score=118244.0 s hg17.chr17_random 1868650 104 + 2618010 CTNTCTCACACAGATCAACTTCTTCATCTTCGTCCGCATCGTTCAGCTGCTCGTGGCCAAGCTGCGGGCACGGCAGATGCACCACACAGACTACAAGTTCCGGT s panTro1.chr19 81124497 103 + 82489036 CT-TCTCACACAGATCAACTTCTTCATCTTCGTCCGCATCGTTCACCTGCTCGTGGCCAAGCTGCGGGCGCGGCAGATGCACCACACAGACTACAAGTTCCGGT s mm5.chr11 120208819 103 + 121648857 TT-TCTCACACAGATCAATTTTTTCATCTTTGTCCACATCATTCACCTTCTTGTGGCCAAGCTGCGTGCCCATCAGATGCACTATGCTGACTATAAGTTCCGGT s rn3.chr10 109942807 103 + 110733352 TT-CCTCACACAGATCAATTTTTTCATCTTTGTCCGCATCATTCATCTTCTTGTGGCCAAGCTGCGTGCCCATCAGATGCACTATGCTGATTACAAGTTCCGGT s canFam1.chr18 30334346 103 + 66173745 CT-CCGCACGCAGATCAACTTCTTTATCTTCATCCGCGTCCTCCTCATCCTCATGGCCAAGCTTCGGGCCCGCCAGATGCGCTACAGCGACTACAAGTTCCGGT s fr1.chrUn 221965365 103 - 349519338 TG-TCTTTCACAGATAAACTTCCTCATTTTTATCCACATCATCAAAATTCTGGTATCGAAACTTCGAGCCCACCAGATGAGATACACCGATTACAAATTCCGGT s danRer1.chr1 1585023 102 - 40858791 --CTCTCTCGCAGATTAACTTCATTATATTCATCCGTATCATAAAGATTCTGATGTCCAAGCTGAAGGCGCATCAGATGAGATACACCGACTATAAGTTCAGGT a score=998.0 s hg17.chr17_random 1868754 6 + 2618010 GGGTGC s panTro1.chr19 81124600 6 + 82489036 GGGTGC s mm5.chr11 120208922 6 + 121648857 GGGTAA s rn3.chr10 109942910 1 + 110733352 G----- s canFam1.chr18 30334449 6 + 66173745 GGGTgc s fr1.chrUn 221965468 6 - 349519338 GAGTCC a score=2392.0 s hg17.chr17_random 1868760 23 + 2618010 -CGCGGCAGCTGGCGTCTCGAGAC s panTro1.chr19 81124606 23 + 82489036 -CGCGGCGGCTGGCGTCTGGAGAG s mm5.chr11 120208928 21 + 121648857 GGGCGAGGGCCTGGGCCCAGA--- s rn3.chr10 109942911 20 + 110733352 -GGCAGGGGCCAGGGCCTGGG--- a score=3659.0 s hg17.chr17_random 1868783 17 + 2618010 CTGGAGACCCTCAGGGC s panTro1.chr19 81124629 17 + 82489036 CCGGAGACCCTCAGGGC s mm5.chr11 120208949 17 + 121648857 CTGGAGAGGGGCAGGGT s rn3.chr10 109942931 7 + 110733352 ----------TCCAGAC s fr1.chrUn 221965501 17 - 349519338 CTGGAGATTCACCTGGC a score=0.0 s hg17.chr17_random 1868800 21 + 2618010 CAGAGGGCAGCTGGGGGTGGG a score=860.0 s hg17.chr17_random 1868800 18 + 2618010 CAGAGGGCAG-----CTGGGGGT s panTro1.chr19 81124646 18 + 82489036 CAGAGGGCAG-----CTGGGGGT s mm5.chr11 120208966 23 + 121648857 TGGGGGTCAGTGCCTTTGTGGGG s rn3.chr10 109942938 17 + 110733352 TGGAGAG-GG-----ATGAGGTT s canFam1.chr18 30334455 14 + 66173745 ----gggcgg-----cgcgggcc a score=3190.0 s hg17.chr17_random 1868818 3 + 2618010 GGG s panTro1.chr19 81124664 3 + 82489036 GGG s mm5.chr11 120208989 3 + 121648857 GAA s rn3.chr10 109942955 3 + 110733352 GGG s canFam1.chr18 30334469 3 + 66173745 ggg s galGal2.chrUn 105942049 3 + 165033910 GGG a score=-26102.0 s hg17.chr17_random 1868821 65 + 2618010 GACTCCAAGCTCCACGTGGATGGTGCGGGCCGAGGG----TGGGGGCGGT---GGGTGACTCAGGCGCTGCC s panTro1.chr19 81124667 65 + 82489036 GACTCCAAGCTCCACGTGGATGGTGCGGGCCGAGGG----TGGGAGCGGT---GGGTGACTCAGGCGCTGCC s mm5.chr11 120208992 41 + 121648857 AGCCCAGAAGACC---CGGAAGGTAAGGGTC----------------------------CTCAAGCTCTGCC s rn3.chr10 109942958 58 + 110733352 GG--TCAATGTCT---TTGTGGGGGAAAGCCCAGAAGATTTTGCAGAGTT---------CTCAAGCTCTGCC s canFam1.chr18 30334472 45 + 66173745 cg--------------gggtgggcgggggccgcggg-----gggcgcggT---GG----CTCAGGCTCC-CA s galGal2.chrUn 105942052 64 + 165033910 TACCCTGAGCTCTAA-CAGGAGCTGCTGCCTGCTGG----CTGCCATGCCCACGGGGACCCCTTGCTGT--- s fr1.chrUn 221965518 20 - 349519338 -------GCCTCC---TTGA---------------------------------------CTCCACGTCT--- a score=251667.0 s hg17.chr17_random 1868886 149 + 2618010 TCTGCAGGCTGGCCAAGTCCACGCTGACCCTCATCCCTCTGCTGGGCGTCCACGAAGTGGTCTTCGCCTTCGTGACGGACGAG------CACGCCCAGGGCACC----CTGCGCNTCCGCCAAGCTCTTCTTCGACCTCTTCCTCAGCTCCTTCCAGGT s panTro1.chr19 81124732 148 + 82489036 TCTGCAGGCTGGCCAAGTCCACGCTGACCCTCATCCCTCTGCTGGGCGTCCACGAAGTGGTCTTCGCCTTCGTGACGGACGAG------CACGCCCAGGGCACC----CTGCGC-TCCGCCAAGCTCTTCTTCGACCTCTTCCTCAGCTCCTTCCAGGT s mm5.chr11 120209033 148 + 121648857 CCTGCAGGCTGGCCAGGTCCACGCTGACCCTCATCCCTCTGCTGGGGGTCCACGAGGTGGTCTTTGCCTTTGTGACTGACGAG------CATGCCCAAGGCACC----CTGCGC-TCCACCAAGCTCTTTTTTGACCTGTTCCTCAGCTCCTTCCAGGT s rn3.chr10 109943016 148 + 110733352 CCTGCAGGCTAGCCAGGTCCACGCTGACCCTCATTCCTCTGCTGGGAGTCCACGAAGTGGTCTTTGCCTTTGTGACTGATGAG------CATGCCCAGGGCACC----CTGCGC-TCCACCAAGCTCTTTTTTGACCTGTTCTTCAGCTCCTTCCAGGT s canFam1.chr18 30334517 148 + 66173745 CCCGCAGGCTGGCCAAGTCCACACTGACCCTCATCCCCCTGCTGGGGGTCCACGAGGTGGTGTTCGCCTTCGTGACGGATGAG------CATGCCCAGGGGACG----CTGCGC-TCCGCCAAGCTCTTCTTCGACCTCTTCCTCAGCTCCTTCCAGGT s galGal2.chrUn 105942116 148 + 165033910 CTTTCAGGCTGGCCAAAGCCACGCTGACACTCATCCCCCTCTTTGGGATCCACGAGGTCGTCTTCATCTTCGCCACCGATGAG------CAAACCACGGGCATC----CTGCGC-TACATCAAGGTCTTCTTCACCCTCTTCCTCAATTCCTTCCAGGT s fr1.chrUn 221965538 150 - 349519338 ----CAGGTTGGCCAAGTCGACGCTGACCCTGATCCCACTGCTGGGCATCCACCACATGGTCACCATCTTCGTAACGGACGAGTCCACACACTCTACGATCAGC----CTGCGC-CTCACCAAGCTCTTCATAGATCTCTTCTTCTCCTCCTTTCAGGT s danRer1.chr1 1587408 154 - 40858791 TCCTCAGGCTGGCGAAGTCGACGCTGACCCTGATTCCTCTGCTGGGGATTCACGCCGTGCTCTTCACCTTCGTCATTGATGAGTC----TGTGCCCAAAGAGTCTCTGCTGCGG-CTCATCCGCCTCTTTTACGACCTGTTGTTCAGCTCCTTCCAGGT a score=100.0 s hg17.chr17_random 1869035 1 + 2618010 G s danRer1.chr1 1587562 1 - 40858791 G a score=164.0 s hg17.chr17_random 1869035 3 + 2618010 GNc s panTro1.chr19 81124880 3 + 82489036 GCC s mm5.chr11 120209181 3 + 121648857 GAG s rn3.chr10 109943164 3 + 110733352 GAG s canFam1.chr18 30334665 3 + 66173745 GCC s galGal2.chrUn 105942264 3 + 165033910 GAG a score=350.0 s hg17.chr17_random 1869038 42 + 2618010 cgcncgcccgc--------------cggctcccccgcccggggcgc-AGTGTGCCAC-------- s panTro1.chr19 81124883 42 + 82489036 Tgcccgcccgc--------------cggctcccccgcccggggcgc-AGTGTGCCAC-------- s mm5.chr11 120209184 38 + 121648857 T----CTCCAT--------------CATACCCCACCCCTGGGACCC-AGAGTGCTGT-------- s rn3.chr10 109943167 39 + 110733352 T----CTTCAT--------------CATAGCCCATCCCTGGGACACAAGAGTGCTGT-------- s canFam1.chr18 30334668 60 + 66173745 CGCCCCGCCCCTGTAAGCACCTgcgcgccccccccccccgccgcTC-----CCCCACCCCAGCCG a score=2293.0 s hg17.chr17_random 1869080 12 + 2618010 CCCTGACCACCC----------------------------------- s panTro1.chr19 81124925 12 + 82489036 TCCTGACCACCC----------------------------------- s mm5.chr11 120209222 12 + 121648857 CCTTGACCACTC----------------------------------- s rn3.chr10 109943206 12 + 110733352 CCCTGACCACTC----------------------------------- s canFam1.chr18 30334728 12 + 66173745 CCCTGACTGTCG----------------------------------- s danRer1.chr1 1587583 47 - 40858791 CACTGATTACCTAAAAGAGGAGCTTCATGATGAGTTCTTGTGTTGTC a score=82285.0 s hg17.chr17_random 1869092 59 + 2618010 TGTCTCTCCAGGGCCTGCTGGTGGCTGTCCTCTACTGCTTCCTCAACAAGGAGGTAGGT s panTro1.chr19 81124937 59 + 82489036 TGTCTCTCCAGGGCCTGCTGGTGGCTGTCCTCTACTGCTTCCTCAACAAGGAGGTAGGT s mm5.chr11 120209234 59 + 121648857 TCTTTCTCCAGGGTCTGCTGGTGGCTGTTCTCTACTGTTTCCTCAACAAGGAGGTAGGT s rn3.chr10 109943218 59 + 110733352 TCTTTCTCCAGGGTCTGCTGGTGGCTGTTCTCTACTGTTTCCTCAACAAGGAGGTAGGT s canFam1.chr18 30334740 59 + 66173745 CCTCCCCCCAGGGCCTGCTGGTGGCCGTGCTGTACTGCTTCCTCAATAAGGAGGTAGGT s fr1.chrUn 221966410 59 - 349519338 TGTCTCCACAGGGTCTCCTGGTGGCCATCTTGTACTGCTTTGTGAACAAAGAAGTGAGT s danRer1.chr1 1587630 59 - 40858791 TGTGATTGTAGGGTCTGCTCGTGGCCATCCTGTACTGCTTCGTCAACAAAGAGGTGAGT a score=2769.0 s hg17.chr17_random 1869151 7 + 2618010 GGGAGTG s panTro1.chr19 81124996 7 + 82489036 GGGAATG s mm5.chr11 120209293 7 + 121648857 GAAGCTG s rn3.chr10 109943277 7 + 110733352 GAAGCTG s canFam1.chr18 30334799 7 + 66173745 GGCAGGG s danRer1.chr1 1587689 7 - 40858791 GAAGCTG a score=22691.0 s hg17.chr17_random 1869158 304 + 2618010 GGGGCATCTGAGACCATCAGCACTGGCCGTCGGGGTCAGGGGCAGAGAGAGGCACAGGGATGCCAGCCCCACCCCTGCCCGGGGGTTGGAACACGTGGGGCCCAAGCCTTTCCCTCCCCCTGCTCTTATTGGGTGCAGTTGCCATGGCGCTGGGTGTCAGGCCCCCA---GGACAGGTTGGCCTCAGCCCCATCGCTACGGTGTCCACCGT---NGGGGGTCCCCAGGTGTCTGCAGA---CTGCTTTCCGTGGCGATGCTGGGTGGCATAGCT-----------GTGCCCAGCAGGGAGCTTGTGTCGCTCTGCACCCCTCAG-- s panTro1.chr19 81125003 303 + 82489036 GGGGCATCTGAGACCATCAGCACTGGCCGTCAGGGTCAGGGGCAGAGAGAGGCACAGGGATGCCAGCCCCACCCCTGCCCGGGGGTTGGAACACGTGGGGCCCAAGCCTTTCCCTCCCCCTGCTCTTATTGGGTGCAGTTGCCATGGCGCTGGGTGTCAGGCCCCCA---GGACAGGTTGGCCTCAGCCCCATCGCTACGGTGTCCACCGT----GGGGGTCCCCAGGTGTCTGCAGA---CTGCTTTCCGTGGCGATGCTGGGTGGCATAGCT-----------GTGCCCAGCAGGGAGCTTGTGTCGCTCTGCACCCCTCAG-- s mm5.chr11 120209300 204 + 121648857 GGAAC-------ACAATCAGAGCTGGCCCTGAGGGT----------------------------------GGCCTTGCCCTGGTAT--GACCATA-------------TCTCCATCCCC-----ATTATTAAG----GTTG-CAT-GTGTTGGATGTCAGGTCCCC------CTAGGT---CCTCAG------------GGAATTCAGTGTATGAGGTGGTCC------------------TTGCCTTTCCTGGTGA---CAAATGGCCCCGCT-----------GAACCCAAGGTGAAACTTGCCTTGCTCTGGGTCTGCTTA-- s rn3.chr10 109943284 202 + 110733352 GGAAC-------ACAATCAGAGCTGGCCATGAGGAT----------------------------------GGCCTTGCCCTGGTCT--GACCATA-------------CCTTCATCCCC-----ATTATTACA----GTTG-CAT-GCGTCGGATGTCAGGTCCCC-------TAGGT---CCTCAG-------GGAGCAGGGT------TATGAGATGGTCC------------------CCGCCTTTCCTGGTGA---CAAGTGGCCCTGCT-----------GAACCCAATGTAAAACTTGCCTTGCTTTGGGTCTGCTTA-- s canFam1.chr18 30334806 217 + 66173745 GAAGC----------------ACAGGCGCCCGGGGC--------------------------------------------AGGGGG--GAGCCC--------------TCCACGTCCAC-------------------CTG-CGT-TTACTGGGCGCTAGACCCCGACATGGGCAG-----CCTCAGCCGCTCCTCAGGGAGAGCACTCGA---CGGGGGTGCCCAGGCATCGGGGGACCCCCGTGCTCCATGGCGG----GGCTGGCCTCGCTCGGCACCCAAAACGCCCCGTAGTGAGCCCAGCCCGTCCTCTGCCCCCCTAAG a score=11938.0 s hg17.chr17_random 1869462 72 + 2618010 AGCGGAGACTGGGCATCTCCGATGAGGCCCACAGCAGGTCCCGGNTGGGGTGGANGNANGGACAGNGCAGGC s panTro1.chr19 81125306 67 + 82489036 AGCGGAGACTGGGCATCTCCGAAGAGGCCCCCAGCAGGTCCCGG-TGGGGTGGAG---AGGACAG-GCAGGC s mm5.chr11 120209504 65 + 121648857 GATTAAGGCTGGGCACCTCAGA-GAGGCCCAGACAAGATCCTAA-TGAGGTGCGT----TGGCAG-AGTAGC s rn3.chr10 109943486 65 + 110733352 GATTGAGGCTAGGCACCTCAGA-GTGGCCCAGTCAGGATCCTAA-CGAGGTGGGT----TGGCAG-AGAAGC a score=2422.0 s hg17.chr17_random 1869534 29 + 2618010 CCTAGGACTGGCCTGCCCCGTCCCCCTCC s panTro1.chr19 81125373 29 + 82489036 CCTAGGACTGGCCTGCCCCGTCCCCCTCC s mm5.chr11 120209569 16 + 121648857 CCTACCCCTGG-------------CTCCT s rn3.chr10 109943551 16 + 110733352 CCTACCCCTGG-------------CTCCT s fr1.chrUn 221966509 26 - 349519338 CTCGGGACTGA---TCTCAGCTACTTTCC a score=33887.0 s hg17.chr17_random 1869563 87 + 2618010 CCAGGTGCAGTCGGAGCTGCGGCGGCGTTGGCACCGCTGGCGCCTGGGCAAAGTGCTATGGGAGGAGCGG---------AACACCAGCAACCACAG----------------- s panTro1.chr19 81125402 87 + 82489036 CCAGGTGCAGTCGGAGCTGCGGCGGCGTTGGCACCGCTGGCGCCTGGGCAAAGTGCTATGGGAGGAGCAG---------AACAGCAGCAACCACAA----------------- s mm5.chr11 120209585 96 + 121648857 CTAGGTGCAGGCAGAGCTGATGCGGCGTTGGAGGCAATGGCAAGAAGGCAAAGCTCTTCAGGAGGAAAGGTTGGCCAGCAGCCATGGCAGCCACAT----------------- s rn3.chr10 109943567 96 + 110733352 CTAGGTGCAGGCAGAGCTACTGCGGCGTTGGAGGCGATGGCAAGAAGGCAAAGCTCTTCAGGAGGAAAGGATGGCCAGCAGCCATGGCAGCCACAT----------------- s fr1.chrUn 221966535 84 - 349519338 TCAGGTGCAATCAGAAATCCTGAAGACGTGGAAGCGCTGGAAACTGGGGAGGAACATTGAGGAAGAG------------TACCGCCACACCTACAG----------------- s danRer1.chr15 5854143 107 - 23217395 CCAGGTACAGTCGGAAATCAAAAAGAAATGGCAGCGATGGAAACTGGGAATAAGTATTTTGGATGACCAG------CGTAACACAGGTAGCAACACTCAGCCAGTAGGAACCG a score=13978.0 s hg17.chr17_random 1869650 92 + 2618010 GGCCTCATCTTCGCC----CGGCCACGGCCCTCCCAGCAAGGAGCTGCAGTTTGGGAGGGGTGGTGGCAGC--CAGGATT----------CATCTGCGGAGACCCCCT s panTro1.chr19 81125489 92 + 82489036 GGCCTCGTCTTTGCC----CGGCCGCGGCCCTCCCAGCAAGGAGCTGCAGTTTGGGAGGGGTGGTGGCAGC--CAGGATT----------CATCTGCGGAGACCCCCT s mm5.chr11 120209681 104 + 121648857 GGCCCCAGCAGGGCC----TTGTCATGGTGATCCCTGTGAGAAACTTCAGCTTATGAGTGCAGGCAGCAGCAGTGGGACTGGCTGTGTGCCCTCTATGGAGACCTCGC s rn3.chr10 109943663 104 + 110733352 GGCCCCAGCAGGGAC----TTGTCATGGTGATCCCTGTGAGAAACTTCAGCTTATGAGTGCAGGCAGCAGCAGTGGGACTGGCTGTGAGCCCTCTGCGAAGACCTCAT s fr1.chrUn 231912887 80 - 349519338 CACCTCAAGAGTGGCAGCATTGCCACGGGCAACCT--------GCTCCTCCATGAAAACAATGCCAGCGA--------------------CCCCAGCGGGGACTCACC s danRer1.chr15 5854250 84 - 23217395 GTCCTCAATGTCACC----ATGACCCGGCCTGCTCTCCCGAATGCCCCCT--------GGACAGTGGCAGC--CAGCTGT----------CCTCAGATCCAACACCCT a score=3597.0 s hg17.chr17_random 1869742 9 + 2618010 TGGCTGGTG s panTro1.chr19 81125581 9 + 82489036 TGGCTGGTG s mm5.chr11 120209785 9 + 121648857 TGGCCAGTA s rn3.chr10 109943767 9 + 110733352 TGGCCAGTA s fr1.chrUn 231912967 9 - 349519338 CCGCTTGGG a score=82120.0 s hg17.chr17_random 1869751 386 + 2618010 GCCTCCCTAGATTGGCTGAGAGCCCCTTCTGAACCCTGCTGGGACCCCAGCTAGGGCTGGACTCTGGCACCCAGNAGGGCGTCGCTGGACAACCCAGAACTGGACGCCCAGCTGAGGCTG--GGGGCGGGGGAGCCA-ACAGCAGCNCCCCACCTANCCCCCCNACCCCCAGTGTGGCTGTCTGCGAGATTGGGCCTCCTCTCCCTGCACCTGCNTTGTCCCTGGTGCAGAGGTGAGCAGAGGAGTCCAGGGCGGGAGTG-----GGGGCTGTG----CCGTGAACTGCGTGCCAGTGTCCCCACGTATGTCGGCACGTCCCATGTGCATGGAAATGTCCTCCAACAATAAAGAGCTCAANGTGGTCAC--NCGTGCATGTCNTGGAAAGCAGGGCTGGA s panTro1.chr19 81125590 380 + 82489036 GCCTCCCTGGATTGGCTGAGAGCCCCTTCTGAACCCTGCTGGGACCCCAGCTAGGGCTGGACTCTGGCACCCAG-AGGGCGTCGCTGGACAACCCAGAACTGGACGCCCAGCTGAGGCTG--GGGGCGGGGGAGCCA-ACAGCAGC-CCCCATCTA--CCCCCCACCCCCAGTGTGGCTGTCTGCGAGACTGGGCCTCCTCTCCCTGCACCTGCCTTGTCCCTGGTGCAGAGGTGAGCAGAGGAGTCCAGGGCGGGAGTG-----GGGGCTGTG----CCGTGAACTGCGTGCCAGTGTCCCCACGTATGTCGGCACGTCCCATGTGCGTGGAAATGTCCTCCAACAATAAAGAGCTCAA-GTGGTCAC---CGTGCATGTCCTGGAAAGCAGGGCTGGA s mm5.chr11 120209794 343 + 121648857 GTCTCCCAAGGTTGGCTGACAGCCCCACCTGAATCTCCACTGGAGCCTAGCCA-GGCTGCGTTCAG------AA-AGGGCCTCAGAGGACAACCCAGAGCCAGATGCCCGGCCAAGGCTGAAGAGACAAAGCAGCAAGACAGCAGC-------------------------------TTGT-------ACTGTGC--ACACTCCCCTAACCTGTCCTAG-CCTGGCACAGGCCACAGTGACAGAGTAGGGGTTGGATATGATGGAGAAGCCATGTTATCTATGAACTCTG----AGTGTTCCCATGTGTGTTGACATGGTCCCTGTACCCAGATATGTCCTT---CAGTAAAAAGCTCGA-GTGGGAGCTGCTGCACAGCTCGTGGACAGCAGGCTTGAA s rn3.chr10 109943776 339 + 110733352 GTCTCCCAAGGCTGGCTGACAGCCCCACCTGAATCTCCACTGGACTCCAGCCA-AGTTGGATTCAG------AA-AGGGCCTCACAAGACAACCCAGAAACAGATGCCTGGCCAAGGCTGAAGAGGCAAAGCAGCAAGACAGCAGC-------------------------------TTGT-------ACTATCC--ACACTCCCCTAACCTGTCCTGG-CCGGGTACAGGCCACATTGATGGAGTAGGGGCTGGATATGATGGAGTAGCCATG----CTATGAACTATG----GGTGTTCCCATGAGTGTTGCCATGTTCCATGCACACAGATATGACCTT---CAGTAAAGAGCTCCC-GTAGGACCTGCTGTGCATATCTTGGACAGCCGGGCTTGA a score=5705.0 s hg17.chr17_random 1870137 60 + 2618010 NAATGCTGGGGCCGAAGC-----NAGTGGGGGATG----GAACAGNCGGTGGGTGGTCAGCGCCAGTGC s panTro1.chr19 81125970 57 + 82489036 -AATGCTGGGGCCGAAGC------AGTGGGGGATG----GAACAG-CGGTGGGTGGTCAGCGCCAGTGC s mm5.chr11 120210137 66 + 121648857 -GCCCCCAGGGACGGGGTTTGGGAGGCCGGGGATGAGCAGCACACTCAGCAGGTGG--AGCGCTAGTGC a score=4070.0 s hg17.chr17_random 1870197 50 + 2618010 GGGCTGTTGAAGGGTCCCCNTGCTGTCCCAGTTCACTCAGAGTTGGCACT s panTro1.chr19 81126027 50 + 82489036 GGGCTGTTGAAGGGGTCCCCTGCTGTCCCAGTTCACACAGAGTTGGCACT a score=34622.0 s hg17.chr17_random 1870260 424 + 2618010 ATCCNGAAGGCAGCCAGCCTGTGCCCATCTGA------GCAGGTCCTGGCCACCTTCCCATCNTGGTTCTGGCGGGCAGTCCCCCTGGACGCTTTGGCCACCAGAGGGTCACCATTCACCAGCAGAGACNTGAGGGGCACAGTGGCTAAGGCGGCATGAGGCATCACAGTCCCCTGACCGACCCCATCAGCACTGGATTCACCCGAGGGCGTCTTCTCCCTGGAGGCCGTGAGGACACTGGCACCTGGCTCATCGGCCCGCCCTTCCTCTGAGCCTCCTGGCCTCCGTTTCATCTCAGCTCCAGCCCCCTCGGGCAATTTACAGGCCACGTAGCAGATTGAAGCGGGAAGAAATGGGCCTGAACANTTGCCGCGGGTCCAGGCGACGGAGGAGGGCAGGTTGCCCAACTTCTGCACAGGACCCGGGGTGC s panTro1.chr19 81126177 423 + 82489036 ATCCCGAAGGCAGCCAGCCTGTGCCCATCAGACTCTCAACA-----TGGCC-CCTTTGAATCGTGGTTCTGGGGGGAAGTGCCTTTGGACGCTTTGGTCACCAGAGGGTCACCATTCACCAGCAGAGACGTGAGGGGCACAGTGGCTAAGGCGGCATGAGGCATCACAGTCCCCTGACCGACCCCATCAGCACTGGATTCACCCGAGGGCGTCTTCTCCCTGGAGGCCGTGAGGACACTGGCACCTGGCTCATCGGCCCGCCCTTCCTCTGAGCCTCCTGGCCTCCGCTTCATCTCAGCTCCAGCCCCCTCGGGCAATTCGCAGGCCACGTAGCAGATTGAAGCGGGAAGAAATGGGCCTGAACAC-TGCCGCGGGTCCAGACAACGGAGGAGCGCAGGTTGCCCAACCTCTGCACAGGACCCGGGGTGC a score=9439.0 s hg17.chr17_random 1870707 109 + 2618010 GCCACACAGAGAGGTCCGGCCTACGCCAGTCCTCGTGCCACACAGAGAGGTCCGGCCTACGCCAGTCCTCGTGCCACACAGANGAGGTCCGGCCTACGCCAGTCCTCGT s panTro1.chr19 81126600 108 + 82489036 GCCACACAGAGAGGTCCGGCCTACGCCAGTCCTCGTGCCACACAGAGAGGTCTGGCCTATGCCAGTCCTCGTGCCACACAGA-GAGGTCCAGCCTACGCCAGTCCTCTT a score=10496.0 s hg17.chr17_random 1870816 121 + 2618010 GCCACACAGNANGAGGTCCGGCCTACGCCAGTCCTCGTGCCACACAGAGAGGTCCGGCCTACGCCAGTCCTCGTGCCACACAGAGAGGTCCGGCCTACGCCAGTCCTCTTGCCACCTCGTG s panTro1.chr19 81126600 119 + 82489036 GCCACACAGA--GAGGTCCGGCCTACGCCAGTCCTCGTGCCACACAGAGAGGTCTGGCCTATGCCAGTCCTCGTGCCACACAGAGAGGTCCAGCCTACGCCAGTCCTCTTGCCACCTCGTG a score=5391.0 s hg17.chr17_random 1870937 34 + 2618010 GTGGGTGGGCGCCCTGCTTGCCAGCCAGGGAGCA s panTro1.chr19 81126719 34 + 82489036 GTGGGTGGGCGCCCTGCTTGCCAGCCAGGGAGCA s rn3.chr10 109944151 34 + 110733352 GTGGACAGGCACCACACTCAGCAGGTAGAGAGAG a score=16874.0 s hg17.chr17_random 1870971 88 + 2618010 ----------CCAGGAAAGAGCTGCCTCCTGCGTGCTGGACACAGGAGGTGCTTCAGGGTGGGGTCTCCCATTGTGTGGGGCCCAACCTGAGTCTAAG----------------------------- s panTro1.chr19 81126753 88 + 82489036 ----------CCAGGAAAGAGCTGCCTCCTGCGTGCTGGACACAGGAGGTGCTTCAGGGTGGGGTCTCCCATTGTGTGGGGCCCAATCTGAGTCTAAG----------------------------- s mm5.chr11 120210206 74 + 121648857 ----------CCAGGAAAGAACTGTCTCTAACGT-------------GGTGCTCTGGGGTAGGAGCCCACTTCCTCCAGGA-TCACCCTGAACCTAAG----------------------------- s rn3.chr10 109944185 113 + 110733352 CTAATGCAATCCAGGAAAGAACTGTCTCTGAAGT-------------GGTGCTTTGAGGTAGCAGCTCACTTCCTCCAGGA-TTCCCCTGAACCTAAGTTGTCCTTTGAGGAAATGTGTGTGATACA a score=285.0 s hg17.chr17_random 1871059 21 + 2618010 GGCCCAGGGACCA-----------CACAGCGG---- s panTro1.chr19 81126841 21 + 82489036 GGCCCAGGGACCA-----------CACAGCGG---- s rn3.chr10 109944298 36 + 110733352 GGCTCTTGACTCAGCCCTGTAAGTCAGAGCCTCATT a score=7445.0 s hg17.chr17_random 1871080 18 + 2618010 GGGTGGAGACAAATTCAG s panTro1.chr19 81126862 18 + 82489036 GGGTGGAGACAAATTCAG s mm5.chr11 120210342 18 + 121648857 GAGCAGAGACAAGTCCAG s rn3.chr10 109944334 18 + 110733352 GAGCAGAGGCAAGTCCAG a score=297364.0 s hg17.chr17_random 1871098 844 + 2618010 GGTAGAAGCTGTGAGGGGCCTGTGGTCAGCCCCCCGGGGGGTCCCTGCAGCAGGCACTGTGA--GACCTAC----TGAGGTGTGTGCATGG-GCTGGGGAAGGA------G----CCAGTCAGGTGCCCCTGCTCTGAGGAGCTGCTGGGAAGTGCTGCTGGGCCCTGGGNGGAAGGGGTGCTCACAGCCCCTGCCTGGGCCACGTGGGCTGGANGCCGCTCAGGCAGAGCCGGACTAATTGGGGCAAATGANGGGGACAGGAGGCCTCTGAGGAAAGGTAAATAGAATTACTCACCCGCCAGG-----CACTGGGGCCCTCCTGGGGGGGCCCTCANCCCT--GCCACCCA------------------------CCACAGGGCCTGCATGCAGCAGGGAGGGAAGTGAGCTGATTAGGCAAGGCTGGACCCTTCTG------GGGCCCTGGGGTTGCTGTGATT----GGGANCGGCAAGGCCA-GGAGACGGTCCCCTGAGCTGCACCTGCTGGAGGCCTGTGATCTCAGACCTTAAGGCTTCAGG---------CCAGCTCTACGCCC-CTCCGGCCTCAGGTCCTGGCTCTCCTCTGAGCCCTGGATGCCCNGGGTGCCTG-TGTGGGCACGAGGCTGCTCCGAGTCAGCACACGGAGGTGGACATTCTCCTTCATGCCAGCTGAGCTCAGGGCTGGTGACTGCCCTGGGGAAACTGCCCCTCACCTGGGACCTCCTGACAGCCCTCCCCATTCCCGAGTCCCTCTGCCCTTGTCCTCTTTCACCTCTGTCCCGCCCTCATCCCTAAGGGAACTGGAGCAGGCTGGTGGA--GTTGGGTGGAGTTGGGGA-CTGGCAGGGGGTGGACTCACCC--------AGGCAATAAACACTGGCCCTAACCAGGCAGTCCTGCAGG s panTro1.chr19 81126880 837 + 82489036 GGTAGAAACTGTGAGGGGCCTGTGGTCAGCCCCC-GGGGGGTCCCTGCAGCAGGCACTGTGA--GACCTGC----TGATGTGTGTGCATGG-GCTGGGGAAGGA------G----CCAGTCAGGTGCCCCTGCTCTGAGATGCTGCTGGGAGGTGCTGCTGGGCCCTGGG-GGAAGGGGTGCTCACAGCCCCTGCCTGGGCCACGTGGGCTGGA-GCCGCTCAGGCAGAGCCGGACTAATTGGGGCAAATGA-GGGGACAGGAGGCCTCTGAGGAAAGGTAAATAGAATTACTCACCCGCCAGG-----CACTGGGGCCCTCCTGGGGGGGCCCTCA-CCCT--GCCACCCA------------------------CCACAGGGCCTGCATGCAGCAGGGAGGGAAGTGAGCTGATTAGGCAAGGCTGGATCCTTCTG------GGGCCCTGGGGTTGCTGTGATT----GGGA-CGGCAAGGCCA-GGAGACGGTCCCCTGAGCTGCACCTGCTGGAGGCCTGTGATCTCAGACCTTAAGGCTTCAGG---------CCAGCTCTACGCCC-CTCCGGCCTCAGGTCCTGGCTCTCCTCCGAGCCCTGGATGCCC-GGGTGCCTG-TGTGGGCACGAGGCTGCTCCGAGTCAGCACACGGAGGTGGACATTCTCCTTCATGCCAGCTGAGCTCAGGGCTGGTGACTGCCCTGGGGAAACTGCCCCTCACCTGGGACCTCCTGACAGCCCTCCCCATTCCCGAGTCCCTCTGCCCTTGTCCTCTTTCACCCCTGTCCCGCCCTCATCCCTAAGGGAACTGGAGCAGGCTGGTGGA--GTTGGGCGGAGTTGGGGA-CTGGCAGGGGGTGGACTCACCC--------AGGCAATAAACACTGGCCCTAACCAGGCAGTCCTGCACG s mm5.chr11 120210360 840 + 121648857 AATGGGACACACGAAGGG-CTGTGGCCAACCTCTAGGGTGGTCCCTTTGGCTGTTGCTGTGA--TGCCTGCCTAGTGGAGTGTGGAGATAG-GGTGGGGGTGGG------GAGACTCAACCAGCTACCTCTGTTCC-AGTTGCTGGTAGGAAA-----------CCTGG--GGGAGGGGTGTACACAGCCAGCATC-AGGCCACGTGGGCTGTA-GCTGCTCAGGCAGAGCCAGGCTAATTGAAGCAAATGA-AGGGACAGGAGGCCACTCGGGAAAGGTAAACAGAATGACTCACCTGCCAGGCCAACCACTGGGG----CCTGAAGGGGCCTTAG--CCT--GCCACCCT------------------------CC-CAATGCCTGGGCGTAGCAGGGAGGGACTTGAG--GAGCACGGTGGGCGTAACCCCGATGCCCCATGGGTGTCTGGATTACTAGGACTGCCAGGAAACAAAGGGGCTG-GAAGCCTGCAAAGTTGGCTGCATCTGCTGGCGACC-ACGGTTCTTGACTTTGCAGCCTTAGGCAGATCATCCCAGACCTCCACGT-GCCAGGCCCCAGATCCTGATTCTACTCTGAGCCTTGGACACCT-AGGTGCCTGCTGTGGGCACAAAGCCACTCCAAGCCAGCACCAGAGTACATACATTCTCCTTCACGCCAGCTGAGCTCAGGGTTGGTGACTGCCTTGGGG--GTTGCAGCTCACTTGGGGCCTCCTGACAGCCCTCCCCA-TCCTGAGTCTCTCTGCCCTTGTCCTCCTTCACCCTGTCCCCATCTCTGTCCCCAAGGGAACTGGTGCAGGCTGGT------TCAGGCAGGGAAAGAGG-TGGGAGCCAGGTAGGTTCACCT--------AGCCAATGAATATGAACTATGA-CAGACAGCTCCACAGT s rn3.chr10 109944352 834 + 110733352 AAGGGGACACGTGAAGGG-CTGTGATCAACCTCTAGGGTGGTCCTTTTGGCCGTTGCTATGA--TGCCTACCTAGTGGAGTGTGGAGATGG-GGTGGGGGTGGG------GAAAGTCAACCAGGTACCTCTGTTCA-AGTTGCTGGTAGAAAATGATACAGGACCCTGG--GGGAGGGGTGCACACAGCCAACATC-AGGCCACGTGGGCTGTA-GCTGTTCAGG----------CTAATTGAAGCAAATGA-AGGGACAGGAGGCCACTCAGGAAAGATAAATAAAATGACTCACCTGCCAGGCCTGGCACTGGGG----CCTGAAGGGGGCCTTA-CCCT--GCCACCTT------------------------TC-CAATGCCTGGATGCAGCAGGGAGGGAAGTGAG--GAGCCTAGTGGGTGCAACCCAGGT-------GGGCGTCTGAATTACAAGGACTGGTGGGAAACAA-AGGGCTG-GAAGCCTACAATGTTGGCTGCATCTGCTGGAGACCACAGGTTCTTGACTTTGCAGCCTTAGGAAGCTCATCCCAGAGCTCCACGA-TCCAGGCCCCAGATCTTGACTCTACTTTGAGCCTTGGACACCT-TGGTGCCTGCTGTGGGCACAAAGTCATTCCGAGCCAGCACCTGAGTACATGCATTCTCCTTCACGCCAGCTGAGCTCAGGGTTGGTGACTGCCTTGGGG--GTTGCAGCTCACTTGGGGCCTCCTGACAGCCCTCCCCA-TCCCGAGTCCCTCTGCCCTTGTCCTCCTTCACCCCGTCTCCATCTCTGTCCCCAAGGGAACTGGTGCAGGCTGGT------TCAGGCAGGG-AAGAGG-TAGGAGCCAAGTAGGTCCACCC--------CGTCAGTGACTA-GAACCATGACCAGACAGCTCCACAGT s canFam1.chr18 30335877 806 + 66173745 GGCAGGAGGTGTGGG----CTGTGGTCACCCGCCGGGGTG----CCGGAGCCGGTGCTGGGACGGGGCGGC----CGGAGGAAGGAGCCAGCGCCGAGGGCAGGCTGCCCG----CCCGCCAGGTGTCCC--CTCCAAGGGGCCGG-GGGAGGGACCACCGAGCCCTGG--G---GGGGTGCGGGC-------GCC-GCGCTGCGCGGGCTGGA-GCTGCTCA-GCAGAGCCAGGCTAATTGGAGAAAATGA-GAGGACAGAAGGCCTCTCAGGAAAGGTAAATAAAATTAGTCACCC-----------C-----GGCCCTCCTG-AGGGACCTTCA-CCCTGCGCCGCCCACGCCACTGCAGGCCGGACGGGCAGCC-AAGGGCCGAGGCGGGGCACGGAGGGGCCAAGGCTCGTCGGCGGAAACGGAGATCTTTTG------TGGCCCCAGGACTCCTGAGTCG---------CACGGGGGCTGCAGACCCCGGGAAGAGGGAGGGCCCGACTGGAGGCCGCAGGCC---------ACGGCTTCC-----------CCCAGCCCACGCGAGCCCCGGCCCCAGGCCCCTGCCGGACTTTGATGCCTGGAAGCCC-A---------CGAGGGCACA-----------AGTTAGTACGGGACAGTGGCAGTTCTCCTTCACGCCAGCTGAGCCAGGGGTTGGTGACTGCCGGGGGG--GCGTCACCCACCCAGTGGCCTCCTGACAGCCCTCTCTA-CCCTGACTCCCTGCGCCCTCACCCTCCTTCACCCTTGGCCC-----TGTCCCCAAGGGAACCGGAGCCAACCGGGAGAGGGGAGGGCAGAGGCAGAGGCCTGGCGGGGGCTGGACCTGCCCGGCCTATTGGCCAATAAGCATCGGCTCCGACCAGGCGGGG-GGCAGG a score=4054.0 s hg17.chr17_random 1871942 13 + 2618010 CAGGTAGGTGGAG s panTro1.chr19 81127717 13 + 82489036 CAGGTAGGTGGAG s mm5.chr11 120211200 11 + 121648857 --GGTGGGGGGAG s canFam1.chr18 30336683 13 + 66173745 TGGGGAGGCGGGG a score=723.0 s hg17.chr17_random 1871955 4 + 2618010 GGAC s panTro1.chr19 81127730 4 + 82489036 GGAC s canFam1.chr18 30336696 4 + 66173745 GCAC a score=1252.0 s hg17.chr17_random 1871959 15 + 2618010 TGttttttttctttt s panTro1.chr19 81127734 15 + 82489036 TGTTTTTTTTTTTTT a score=30192.0 s hg17.chr17_random 1872023 350 + 2618010 atcttggctcactgcaaactccacctcccaggttcatgtgatntctctgcctcagcctcccgagtagctgggattataggcgtgtgccacgacacctggctaatttttttttttttttttttgagacggagtttcactctcgttgcccaggctggagctcaatggcgcgatctcagctcaccgcaacctccgcctcccaggttcaagcgattctcctgccttagcctccntagtagctgggattacaggcAGGTATGTGATGCCCGGCATCCCAAAGGGGTATCTGCAAGAGTTGGGTGCTGTGTGTGCATGGCTGGGAGGAAGATGACTTTGATACCCTGGAATNCNTG s panTro1.chr19 81127857 347 + 82489036 atcttggctcactgcaaactccgcctcccaggttcaagtccttt-tctgcctcagcctcccgagtagctgggattataggcgtgtgccacgacacctggctaatttttttttttttttttttgagacagagtttcgctctcgttgcccaggctggagctcaatggcgcgatctcagctcaccgcaacctccgcctcccaggttcaagcgattctcctgccttagcctccctagtagctgggattacaggcAGGTATGTGATGCCCGGCATCCCAAAGGGGTATCTGCAAGAGTTGGGTGCTGTGTGTGCCTGGCTGGGAGGGAGATGACTTTGATCCCCTGGAATC--TG a score=29921.0 s hg17.chr17_random 1872373 238 + 2618010 GTGTCTGTGGACACAAAAATACTANTAAAATGAGAGTGGAGACCAGGAAAAANGGAAGACATGANNCTACATGAA------------------------------------GGACCAAATCTAGGAGAGT----------------------CAG--AAGTGCGTCACAGGAATAGGGGACCTTGAGCCAgacagaaggctcagcagagacaccctcaaggggatgaaagggattgagtgcactaat-----atttagagga-------gagagttcaggacttgattagtgactagtacatagaaaact s panTro1.chr19 81128204 236 + 82489036 GTGTCTGTGGACACAAAAATACTACTAAAATGAGAGTGGAGACCAGGAAAAA-GGAAGACACGAA-CTACATGAA------------------------------------GGACCAAATGTAGGAGAGT----------------------CAG--GGGTGCGTCACAGGAATAGGGGAACTTGAGCCAgacagaaggctcagcagagacaccctcaaggggatgaaagggattgagtgcactaat-----atttagagga-------gagggttcaggacttgattagtgactagtacatagaaaact s canFam1.chr18 30336836 300 + 66173745 GTGCACACGTATACACACGTGCTACTAAA--GAGTGTGAGAAACAGCAAAGG-GGAAAACCTAGA-CTACAATAAACAGGGATCAAAACAAAACAAAAAAACAATAAACAGGGATCAGACCTGGGAGAGTGGAGAGGTCACCCCCAGGAAGGCAGATGAGTGCATCACTGGGCAAGGGGACATCAAG-CAGGCAGAAAGCTCCCCCAGACTACCCTAAAGGGGACCAAAG----taagtacactgacgagaaatttaaatgacctggtggagagttcaaaacgtaattagtg-ttagtacataggaaact a score=28916.0 s hg17.chr17_random 1872611 320 + 2618010 aaacaaatgaggctgggtgcagtggctcatgcctgtaatcccagcactttggggggccaaggcgggcgaatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacctcgtctctactgaaaatacaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctacttgggagcctgaggcaggagaatcgcttgaacctgggaggcggaggctgctgtgagccaagatggtgccattgcactccaccctgggtgacagagcaagactccgtctcaaaaaaaaaaaaaaagaaa-----------------gaaaaaacc s panTro1.chr19 81128440 337 + 82489036 aaacaaatgaggctgggtgcagtggctcatgcctgtaatcccagcactttgggaggccaaggcgggcgaatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaacctcgtctctactaaaaatacaaaaattagccaggcgtggtggcgggcgcctgtagacccagctacttgggagcctgaggcaggagaatcgcttgaacctgggaggcggaggctgctgtgagccaagatggcgccattgcactccaccctgggtgacagagcaagactccgtctcaaaaaaaaaaaaaaaaaaaaaagaaagaaaaaaaaagaaaaaacc a score=884.0 s hg17.chr17_random 1872931 4 + 2618010 aagc s panTro1.chr19 81128777 4 + 82489036 aagc s canFam1.chr18 30337136 4 + 66173745 aagt a score=42504.0 s hg17.chr17_random 1872935 157 + 2618010 aaatgaaaaaagaaggcaattaataattccaaagaaaagaaaaatttgggcagaaaagaacaaaacaagcagaatttacc--atgactcagttctgaa-tacaaacacagacatcataatgtaaaca-ccaacactgatgcaaccagaatcatgggagaaa s panTro1.chr19 81128781 157 + 82489036 aaatgaaaaaagaaggcaattaataattccaaagaaaagaaaaatttgggcagaaaagaacaaaacaagcagaatttacc--acgactcagctctgaa-tacaaacacagacatcataatgtaaaca-ccaacactgatacaaccagaatcatgggagaaa s rn3.chr10 109946384 155 + 110733352 AAAGGAAAAAAAGGAGAAATTAGTAATTCCAAGGGACAGGTGGATAT-----AAAAACAAAAACAAAAACCTAACTCACCATACGGTTTACTTCTGAC-TATGAACACAGACATCATAAAGTAATCATCCTATTTTGATGTAACCAAAATTATAGGGAAAA s canFam1.chr18 30337140 150 + 66173745 agatgaaaaaagaaggccattagtaacttcaaggaaaacaaaaagttgggcaaaaagt-----------cataattcaccacatggtttaactctgaattacaaacatagacatcataatgtaaatactgcaggatgatgtaaccaaagttaggagaggag a score=18849.0 s hg17.chr17_random 1873092 161 + 2618010 -aanag----atctagggagggtggtggacgggaatatcacgtatgtac--tgggggTAGGGGAGAGAACAAAATGGGAAAAATCAAGAATAATTCACGTTAGAAATAAAAATACAGAGCAAAATTTAAAAATGCAAAGAATGAGGTGAAGAGTTCAAAGTGGTCANC s panTro1.chr19 81128938 157 + 82489036 -aa-ag----atctagggagggtggtggacgggaatatcatgtatgtac--tgggggtaggGGAGAGAATAAA-TGGGAAAAATCAAGAATAATTCACGTTAGAAATAAAAATACAGAGCAAAATTTTAAAATGCAAAGAATGAGGTG--GAGTTCAAAGTGGTCACC s canFam1.chr18 30337290 154 + 66173745 aaa-agagccatctagggaggatggtgggggggaaggacgtgtctgtatagtgGCAGCGGGGACAAGAATGAAGTAGG-AAAACCGAGAGCACTGTGTGTTTGCCATCTAGAAATAG------------AAATACAATCAATCAGCTGAAGACTTAGAAATGGTTGTC a score=28490.0 s hg17.chr17_random 1873253 329 + 2618010 CNTCGGGGCcngggcgcggtggctcacgcctgtgatccnagcactctgggaggctgaggcgggcggatcacaaggccaggagtttgagaccatcctggctaacaaggagaaaccccatctctactaaaaattagccaggcgtggtggtgggcgccngtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcgcagcttgcagtgagccgagatcgcgccactgcactccagcttgggcaacagagtgagactccgcctcaaacaaaacaaaacaaaacaaaaaaacaaaGTGGTCATCTCTAGGCAAGG s panTro1.chr19 81129095 321 + 82489036 --TCGGggcc-gggcgcggtggctcacgcctgtgatcccagcactttaggaggctgaggcgggcggatcacaaggccaggagtttgagaccatcctggctaacaaggagaaaccccatctctactaaaaattagccgggcgtggtggtgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaaccccggaggcgcagcttgcagtgagccgagatcgcgccattgcactccagcttgggcaacagagtgagactccgcctcaaacaaaacaaaacaaaa-----aaacaaaGTGGTCATCTCTAGGCAAGG a score=5014.0 s hg17.chr17_random 1873582 40 + 2618010 TGGGTGGGAGATGGCTAGGGCTGCAGGTCCACTACGTGAG s panTro1.chr19 81129416 40 + 82489036 TGGGTGGGTGATGGCTAGGGCTGCAGGTCCACTACGTGAG s canFam1.chr18 30337444 33 + 66173745 TGGGGGGGGGA-------GGCGGCTGGTGCACTCCCCGCA a score=2291.0 s hg17.chr17_random 1873622 27 + 2618010 CTGGCTCAGCCTATCCCCAGACACCCT s panTro1.chr19 81129456 27 + 82489036 CTGGCTCAGCCTATCCCCAGACACCCT s rn3.chr10 38251097 23 + 110733352 CTCACTCAGC----CCCCGAGCCTACT s canFam1.chr18 30337477 25 + 66173745 -CAGCCTCCCCTCTTCCTGGACGCTT- a score=7255.0 s hg17.chr17_random 1873649 122 + 2618010 GCACTCACTCAGCCCGGGGTCCTCCCCCTGCACTCACTCAGCCCCGGGTCCTCCCCT-GCACTCACTCAGCCCCGGGTCCTCCCCCTGCACTCACTCAGCCCCGGGTCCTCCC---CTGCCTGCTC s panTro1.chr19 81129483 65 + 82489036 G---------------------------------------------------------GCAGT-ACTCAGCCCCGGGTCCTCCCCCCGCACTCACTCAGCCCCGGGTCCTCCC---CTGCCTGCTC s mm5.chr2 116336144 125 + 181686250 GCACTCACTTTGCCATGGGTCCTTACATAGCACTCACTCTGCCATGGGTCCTCCCAGAGCACT-CCTCTGCCATAGGTCCTCACAGAGCACTTATTTGGCCATGGGTCCTCACAGACAACTCACTC s rn3.chr10 38251122 117 + 110733352 ATACTCACTCAGCCCCCGAGCCT-ACTGTATACTCACTCAGCCCCGGAGCCTACTGT-GTACTCACTCAGCCCCGGAGCCT-ACTGTATTCTCACTCAG-CATGCTTCCTT-----CTGCCCTGTC s canFam1.chr18 30337502 100 + 66173745 GGACAGCCTCAGCCTCGGGCCCTGTCCCTGCTTGCCTT---CCCTGAGCTCTTT----GCACT-GCTCAGTCCC----CTTCCCCCCCCACTACC-----------CCCTCCC---CTCCTCGCCC a score=0.0 s hg17.chr17_random 1873771 8 + 2618010 TTTCTCTG a score=1230.0 s hg17.chr17_random 1873771 4 + 2618010 TTTC s panTro1.chr19 81129548 4 + 82489036 TTTC s mm5.chr2 116336269 4 + 181686250 TTTC s rn3.chr10 38251239 4 + 110733352 ATCC a score=452.0 s hg17.chr17_random 1873775 4 + 2618010 TCTG s panTro1.chr19 81129552 4 + 82489036 TCTG s rn3.chr10 38251243 4 + 110733352 TCCC a score=2084.0 s hg17.chr17_random 1873779 21 + 2618010 ACCCTG---------CCCTCCACTGTTCCT s panTro1.chr19 81129556 21 + 82489036 ACCTTG---------CCCTCCACTCTTCCT s rn3.chr10 38251247 30 + 110733352 ATCCTAGTGTGCTCTCCCTCCATTCTCCCT s canFam1.chr18 30337602 21 + 66173745 ACAGCG---------CCCGGAACAGTCCAC a score=36196.0 s hg17.chr17_random 1873800 381 + 2618010 TTTTCTTCTTTCTCTNCCCTGTTGTGTCCAGGAACCAGGCACCACCCTCATTTCTTCTNTGATCAATctttaaaaaccagcagtgctcagctaactcttcatctatctcccccgacctggggctctgctgaatccacngctttagacccagctatcagctcggcatgtacagctggatgtccaCACCGAGCTGCTcaccctgtccccagcttcttcctcccactgtccactgcagaagcctcctaacaggacccctgctgctaccccggaccctgcaacccattcccacacagcagccaga----tgctttgacacccgaagtcT---CCTAtgaatccgatgaggcctctgcaccacancctcanttttacagaagtacaggggaaa s panTro1.chr19 81129577 376 + 82489036 TTTTCTTCTTTCTCT-CCCTGTTGTGTCCAGGAACCAGGCACCACCCTCATTTCTTCTG-GATCAATCTTTAAAAACCAGCAGTGCTCAGCTAACTCTTCATCTATCTCCCCCGACTTGGGGCCCTGCTGAATCCAC-GCTTTAGACCCAGCTATCAGCTCGGCATGTACAGCTGGATGTCCACACCGAGCTGCTCACCCTGTACCCAGCTTCTTCCTCCCACTGTCCactgcagaagcctcctaacaggacccctgctgctaccccggaccctgcaacccattcccacacagcagccagC----TGCTTTGACACCCGGAGTCT---CCTATGAATCCGATGAGGCCTCTGCACCACA-CCTCA-TTCTACAGAAGCACAGGGGAGA s canFam1.chr18 30337623 277 + 66173745 -CTTCTTCCCTCATC-------------------CTAGG-------------------------------TGAAAACTACCACTGTCTAGACGATTCCCCATCT------CCAGCCCCTGGGCCCC-CCAAATCTGC-ACCTC-----------------------------CTAGAGTTCC---CCAAGCCCCCCA-------CTCAGCTTCCTCTTCCCACAGTC-----CCAAGGTAGCTTGGGGAGgtctctgccctccccccgcccccggt--ctgttccccacatgacagccagagcagtcctttcaCATCCAAGGTGTCACCCCAGGAATCCCATGGAGCCTCCAGATC----TCTTA--TTTACAGAGATGCAGGGGACA a score=22529.0 s hg17.chr17_random 1874181 268 + 2618010 caggggtctgttgacaccacagagatgcagctggcca--------------aaggcagaantgtgggGTACACGACTGTCAAACGCCAGGGGTCCTTACACGAATGGTGGAAAAAGANGGGGCATGTTACGG-ATGGAGGCTCGGGACACATGGGCGCC--GCCTTCCCATGCT--GCCAGCAACCCACCAGGNAACCTATTAATTTAGTCATTTGGGAAATGGGAGCTGGGTATATCGGCTATTAGGAAAT---TGTTCATGCTCAATA----------------------------AGTATT-----AATTACAATT--------------TTCA s panTro1.chr19 81129953 265 + 82489036 CAGGGGTCTGTTGACACCACAGAGATGCAGCTGGCCA--------------AAGGCAGAAG-GTGGGGTACACGACTGTCAAACGCCAGGGGTCCTTACACGAATGGTGGAAAAAGA-GGGGCACGTTACGG-ATAGAGGCTCGGGACACATGGGCGCC--GCCTTCCCATGCT--GCCGGCAACCCACCAGG-AACCTATTAATTTAGTCATTTGGGAAATGTGAGCTGGGTGTATCGGCTATTAGGAAAT---TGTTCATGCTCAATA----------------------------AGTATT-----AATTACAATT--------------TTCA s canFam1.chr18 30338065 309 + 66173745 CAGGGG------------ACAGAGAAGCCGGTTGCCAGGACGTGACCAGTCAAACCTGGAATTCAGGAAACTCCATCTTGAAGCAGCCAAGGCCCTTCAATGCATAGACGGGGCAG--GGGACACAGCGGGGCAGGTGGGCAGTGGACACAGCTACACCTGGCCTTCCCGCCCCGGGGCCATAACCCGCAGGTTAAGGTGTCAA------------GGGAACACGGACTGGG--GAGCAGGTATTTGGGGATTGCTGTTCATGCTCAATACACATAAACATGCTCAGAGCACATGTTCAGTATTTACTGAATTAAAACTGATAAAATTAAAAGTCCA a score=12896.0 s hg17.chr17_random 1874449 87 + 2618010 TAAGAGctta--------------acccccctgaaagaggtcactgtttcctcacttgtaaa--ttgggatactaaaacctgccccatggagttgcca-----------gagtg s panTro1.chr19 81130218 87 + 82489036 TAAGAGctta--------------acccccctgaaagaggtcactgtttcctcacttgtaaa--ttgggatactaaaacctgccccatggagttgCCA-----------GAGTG s canFam1.chr18 30338769 111 + 66173745 TAAAAGCCTAAAAATTTGAGTAGGACCCGTCTCCAAAAGGTCACCATT---TCACTTGCAGACGTAGGGTGGTTAGAACTTGCCCCACGGAGTTGTCAACAGTGATTGGAAGTG a score=2280.0 s hg17.chr17_random 1874536 15 + 2618010 ac--gtgtgtgcgtgca s panTro1.chr19 81130305 17 + 82489036 ACATGTGTGTGCGTGCA s mm5.chr5 28506604 15 + 149219885 AC--AAGTACACATGTA s canFam1.chr18 30338880 15 + 66173745 --ATGTGCGCATGTGCA a score=11673.0 s hg17.chr17_random 1874551 125 + 2618010 caccaacagtacacagcagatagtgaCATATGTGTGCACGCCAACACTACACAGCAGATAGTGACTTGTGCGTGCGCGCCAACACTACACAGCAG----TGACACGTGCGTGCACACCAACA-GTACCCA s panTro1.chr19 81130322 125 + 82489036 CACCAACAGTACACAGCAGATAGTGACAT--GTGTGCACGCCAACACTACACAGCA--TAGTGACTTGTGCGTGCACGCCAACACTACACAGCAGATAGTGACACGTGCGTGCACGCCAACA-GTACACA s mm5.chr5 28506619 123 + 149219885 GAGCAGCAGCACACAACAGGCA--CACGTACACATGTGCTGCATCACCACACATCAGAGACAGATGTACACATGTACAGAGCAATCACACACCAA----GCACACATGTACA-ATGGCAACACAAACCCA a score=19288.0 s hg17.chr17_random 1874676 666 + 2618010 GCAGATAGTGACATGTG--TGCACGCCAACA-----CTACACA----GCAGATA-GTGACTTGTGCGTGCACGCCAA-----------------CACTACACAGCAGATAGTGACATGT---GCGTGCACGCCAACACTACACAGCAGATAGTGACGTGTGTGCACGC----CACTACACA-GCATAGTGACTTGTGTGTGCACGC------CAACACTACACGGCAG-----------ATAGTGACTTGTGTGTGCACGCCAACACTACACGGCAGATAGTGACTTGTGTGTGCACGCCAACA-----CTACACGGCAGATAGTGACTTGTGTGTGCACGCCAACACTACACGGCAGATAGTGACTTGTGTGTGCACGCCAACACTACACGGCAGATAGTGACTTGTGTGTGCACGCCAACACTACACGGCAGATAGTGACTTGTGTGTGCACGCCAACACTACACGGCAGATAGTGACTTGTGTGTGCACGCCAACAGTACACAGCAGA---TAGTGACATATGT-GTGCACGCCAACACTACACGGNAGATAGTGATGTGTGTGCACACCAACACTACACAGCAGATAGTGACATGCGCGTGCACGCCAACACTACACAGCAGGTAGTGACATGTGTGTGCACACCAACA-GTA-----------------------------CACAGCAG---------ATAGTGACATGCGCGTGCACACCAACACTACACAGCAGATAGTGA--TGTGTGTGCACAC-CAACAGT------ s panTro1.chr19 81130447 656 + 82489036 GCAGATAGTGACACGTGCGTGCACGCCAACA-----CTACACA----GCAGATA-GTGACATGTGCGTGCACGCCAA-----------------CACTACACGGCAGATAGTGACTTGT---GCGTGCACGCCAACACTACACGGCAGA------------------------------------TAGTGACTTGTGTGTGCACGC------CAACACTACACGGCAG-----------ATAGTGACTTGTGTGTGCACGCCAACACTACACGGCAGATAGTGACTTGTGTGTGCACGCCAACA-----CTACACGGCAGATAGTGACATATGTGTGCACGCCAACACTACACGGCAGATAGTGACATGCGCGTGCACACCAACACTACACAGCAGATAGTGA--TGTGTGTGCACACCAACACTACACAGCAGATAGTGACATGCGCGTGCACACCAACACTACACAGCAGATAGTGAC--GTGTGTGCACACCAACAGTACACAGCAGA---TAGTGAC--GTGT-GTGCACACCAACAGTACACAGCAGATAGTGACGTGTGTGCACACCAACAGTACACAGCAGATAGTGAC--GTGTGTGCACACCAACAGTACACAGCAGATAGTGAC--GTGTGTGCACACCAACA-GTACACAGCAGTGATGTGTGTGCACACCAACACACAGCAG---------ATAGTGA--TGTGTGTGCACACCAACACTACACAGCAGATAGTGACATGTGCGTGCACAC-CAAGAGT------ s mm5.chr5 28506742 669 + 149219885 GCACACATGCACACATG--TGCA--TCAGAA-----TCACATACCTGGCACATATGTAAAGTGGCAACACACACCAGGCATAAATGTACAGAGTCATAACACACCAGGCA--TACATGTAAAACATGTGCAGCAGCATCACTCACCAGG-CACAACATGTACACAAGTGTAACAGTATGAC-AAAAACAGGCATGCATGTAAACATGTGCAGCAGCATAACACACCAG-----------GAATACATATACACATGTGCAGCAGCATCATATACAAGGCACACATGTACACATGTACAGTGGCA-----TCACACACCCTGCA--------TACATGTAAAGTGACATCACACACCAGGCACACATGTACACATGTACAGCAGCAGCACAC-TCAGGCACACATGTATACATGTGCTGCAGCAGCACACATGAGGCATACAGGTACACATTTGCAGCAGCATCATACACAAGGC----AC--ACTTGTACACATGTAGAGT-CGCAACAAACACTGGTCACACATGTAATGTAGTTTAAAAA-ACAAGGCAGACA----------TATCCGGAGGCATCACCCAACAGGCAGACATGAACACATGTGAAGCAACATTACACAACAGGC----AC--ACATATACACATGGGAA-GTA-----------------------ACATCACACACCAG---------GCACACATGTATACATATACAGCAGCATCACACACCAGGCA------CACATGTGCACAT-GTACAGT------ s fr1.chrUn 167932511 668 - 349519338 GCAGGTTGAGGTGTGCC--TGCACACTGTAATGTGCCTGCACG------------GTGAGGTGTGCCTGCACGGTGA-----------------GGTGTGCCTGCAGG--GTGAGGTGT---GCCTGCAGGGTGAGGTGTGCCTGCACACTGTAATGTGCCTGCACGG--TGAGGTGTGCCTGCACGGTGAGGTGTGCCTGCACGG-TGAGGTGTGCCTGCACGGTGAGGTGTGCCTGCAGGGTGAGGTGTGCCTGCAGGGTGAGGTGTGCCTGCAGG--GTGAGGTGTGCCTGCACACTGTAATGTGCCTGCACG-------GTGAGGTGTGCCTGCACACTGTCGTGTGCCTGCAGG--GTGAGGTGAGCCTGCACACTGTCGTGTGCCTGCAGG--GTGAGGTGTGCCTGCACACTGTCGTGTGCCTGCAGG--GTGAGGTGAGCCTGCACACTGTCGTGTGCCTGCAGGGTGAGGT--GTGCCTGCACACTGTCGTGTGCCTGCAGG-----GTGAGGTGTGC-CTGCACACTGTCGTGTGCCTGCACACTGTAATGTGCCTGCACG--------------------GTGAGGTGTGCCTGCACACTGTCGTGTGCCTGCAGGGTGAGGT--GTGCCTGCACACTGTCGTGTG-----------------------CCTGCACACTGTAATGTGCCTGCACGGTGAGGTGTGCCTGCACACTGTCGTGTGCCTGCAGGGTGAGG--TGTGCCTGCACACTGTAATGTGCCTGC a score=4966.0 s hg17.chr17_random 1875342 36 + 2618010 ACACAGCAG---------ATTGTGATGTGTGTATGCACACCAACG s panTro1.chr19 81131103 36 + 82489036 ACACAGCAG---------ATTGTGACGTGTGTATGCACGCCAACG s fr1.chrUn 167933179 45 - 349519338 ACACTGTAATGTGCCTGCACGGTGAGGTGTGCCTGCACACTGTCG a score=90329.0 s hg17.chr17_random 1875378 1154 + 2618010 GTACAACACGCAACAGTTGCAGTTGCCTCATTTCCNCAAGTCGCCCTCACTGCAGAAAGGGGAGTGTCTCCAGCTGCTTAGTCCAGCAGCCTCCAGGATTGGGTGAGGGTCGGAGGGCCCTGGTGCCCTGCATGGACAAGGCAGTGGCAGCAGGGCTGAAGGACAGGCTGGGGTGGGAGGACCGCAACCCTCTGGGATCGGGCCCCACGGTCAGCTCCCGCAGCCCAGGGGAGAGGTGCCCACTCTAGCAGCCCTTTATGTGCTCCTCAAGCTGANAAGTAGAGACCCCGCTTTGTGACTACAGTGAGTTCTCACACCATTAGGCGAATGGCTGGNGTAAGACCACCCTGTGGCCCCTGCAGAGCTGACCTCACTGGGTGGTCCACCGAAGAGGGGATGGGAGGGCAAGTTTNNNNNNNGNNNNNNNNNCNGNNNNCNNNNNNNNCNCNTNNNNNGCNCNCNNGTAGGTTAGGCCCCCNTCTNCCGCGTCCCCTNCCCCTCCTCACCCCAATNCCCATCCCCCACGCGGTGCATCGG--------GTGAAGGGGTGGGGNNNNNNNCANCACNNNNGGCTCAGNGCTNCCCACAGNCTCNTACCCTCNTGCCCAGCANGTGCNNTGNCCAGNCCGGNCCCCTCCTCTGAAGGGTNCTTGGCAGAANGATCTCCAAATNGAAGGTTTCTGGTGGCAGGCCCAGGTGCTGGGGCCATACCTGGGGGAGCTCCACCCCCCGGCTGTAGGTAGGCAAGGCCCGGATTCCAGGGNCCAGTGTAAGATGACCCAGGTGAGCCCAAATCAGGTCCATCTCTTAACACAAGGAGCTCCCTCGGCACCTCCTGTGTGCTACACAGGGGTCCCAGCACCCATGCAGGGGAGAGGCCTTTGGATCACCACAGCCCACACTCTGTACAGAGGGATAAACTACTGCTTTGCCTGTAGAGTAGCCATTCTTTTATTTAtttttttctttttcttttttttttttttttttttgagacgngagtcttgctctgttgcccaggccggagtgcagtggcgcaatctcagctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcttcccgagtaactgggattataggtgcctgccaccacacccagctaatttttatgttttta s panTro1.chr19 81131139 1153 + 82489036 GTACAACACGCAACAGTTGCAGTTGCCTCATTTCCCCAAGTCGCCCTCACTGCAGAAAGGGGAGTGTCTTCAGCTGCTTAGTCCAGCAGCCTCCAGGATTGGGTGAGGGTCGGAGGGCCCCGGTGTCCTGCATGGACAAGGCAGTGGCAGCAGGGCTGAAGGACAGGCTGGGGTGGGAGGACCGCAACCCTCTGGGATCGGGCCCCACGGTCAGCTCCCGCAGCCCAGGGGAGAGGTGCCCACTCTAGCAGCCCTTTATGTGCTCCTCAAGCTGA-AAGTAGAGACCCCGTTTTGTGACTACACTGAGTTCTCACGCCATTAGGCAAACTGCTGGGGTAAGACCACGCTGTGGCCCCTGCAGAGCTGACCTCACTGGGTGGTCCACCGAAGAGGGGATGGGAGGGCAAGTTTGCTTCAGGGTCAGAGGTCCGGTCCCGGTGGGTGCACCTCCCCAGCCCTCAGGTAGGTTAGGccccc-tctcccgcgtcccctccccctcctcaccccaatccccatcccccATGTGGTGCATCGGGCTGGAGCGTGAAGGGGTGGGGCCTCCAGCAACACCGTGGGCTCAGCGCTCCCCACAGGCTCCTACCCTCCTGCCCAGCATGTGC-CTGGCCAGGCCGGCCCCCTCCTCTGAAGGGTTCTTGGCAGAAAGATCTCCAAATTGAAGGTTTCTGGTGGCAGGCCCAGGTGCTGGGGCCATACCTGGGGGAGCTCCACCCCCCGGCTGTAGGTAGGGAAGGCCCGGATTCCAGGGCCCAGTGTAAGATGACCCAGGTGAGCCCAAATCAGGTCCATCTCTTAACACAAGGAGCTCCCTCGGCACCTCCTGTGTGCTACACAGGGGTCCCAGCACCCATGCAGGGGAGAGGCCTTTGGATCACCACAGCCCACACTCTGTACAGAGGGATAAActactgctttgcctgtagagtagccactcttttattTAtttttttctttttc-----tttttttttttttttgaaac-agagtcttgctctgttgcccaggccggagtgcagtggcgcaatctcagctcactgcaacctccgcctcccgggttcaagtgattctcctgcctcagcttcccgagtagctgggatgatgagtgcctgccaccacacccagctaatttttatgttttta a score=36287.0 s hg17.chr17_random 1876877 454 + 2618010 gaggagggtggatcacaaggtcaggagagtg-----------gctaacacggtgaaacccntgtctctactaaaaatacaaaaagtcagccgggcatggtggcgctcgcctgtagtctcagctactcgggaggttgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtaagccaagctcacaccattgcactccagcctgggtgacagagcaagactncTGTCNTCAAaaacaaacaaacaaacaaacaaacaCACCAAAAACCAGAAAACCCAGAGGGGTAAATTGAGGCAGGCTGGCCGTGTGCCAGGCCCCAGACTGCAGAGCCCAGACTCCCCACCGAAGGCTGAGGGTCGCGCTTGCTGTGTGAGGCTCAGCACCTTNGTCAANGTGCACCCNACACGGTGACTCGTGGGGGTAGCAGCACCAAGCACTGCGCCACCCATGATGTAGTCA s panTro1.chr19 81132476 455 + 82489036 gaggagggtggatcacaaggtcaggagattgagaccatcctggctaactcggtgaaaccc-tgtctctactaaaaatacaaaaagtcggccgggcatggtggcgctcgcctgtagtctcagctactcgggaggttgaggcaggagaatcgcttgaacccaggaggtggaagttgcagtaagccaagctcacgccattgcactccagcctgggtgacaaagcaagactcc-gtc-tcaaaaacaaacaaacaaacaaaaa----CACCAAAAACCAGAAAACCCGGAGGGGTAAATTGAGGCAGGCTGGCCGCGTGCCAGGCCCCAGACTGCAGAGCCCAGGCTCCCCACTGAAGGCTGAGGGTCGCGCTTGCTGTGTGAGGCTCAGCACCTT-GTCAA-GTGCACCC-ACACGGTGACTCCTGGGGGTAGCAGCACCAAGCACTGTGCCACCCGGGATGTAGTCA a score=35311.0 s hg17.chr17_random 1877331 332 + 2618010 TCACCACCTGAAGAAACCAAGGC-TGACTCCAACCTGCTCACAGCCACG-GTGTAGCAATGGCCTGGCCAGGGNCTCAAGCCCACCCCTCCTCCTCCTGGGAATCTGGGAACCCCATGTTTGAGTGGGCCCCCCACTGCAGGACCTCT--GCTGGCCCTTGCAGCTACCACTGTACAGAAGGTGCACAGGGCAGGGCCTTGT---CCCCAAGAGGCTCGGTGAGTGGAAGGCACATGGCATGAGGACCGCTGTGAGCCGCCCGCCCCTCATCCCCGTGGTGGTGTTCCCCAGGCTGCATCGGCTC-----------AACAGGGGGAGGCAGCCTGGGTCACCC-TAGCCTG s panTro1.chr19 81132931 331 + 82489036 TCACCACCTGAAGAAACCAAGGC-TGACTCCAACCTGCTCACAGCCACG-GTGTAGCAATGGCCTGGCCAGGG-CTCAAGCCTACCCCTCCTCCTCCTGGGAATCTGGGAACCCCATGTTTGAGTGGGCCCCCCACTGCAGGACCTCT--GCTGGCCCTTGCAGCTACCACTGTACAGAAGGTGCACAGGGCAGGGCCTTGT---CCCCAAGAGGCTCGGTGAGTGGAGAGCACATGGCATGAGGACCGCTGTGAGCCGCCTGCCCCTCATCCCCGTGGTGGTGTCCCCCAAGCTGCATCGGCTC-----------GACAGGGGGAGGCAGCCTGGGTCACCC-TAGCCTG s mm5.chr11 120213184 309 + 121648857 TCATCACCTTAAGAGGTTGGGGCATGA--CAATGTTGCTGACGGTCATGTGTGTGGCACCAGCTCAGCCAATG---TAGGCTCACTACTCC----CGGAGGGGTCAGGAAGCCCCCTGTGT---------------TCTAGGACAGCTGGGATGAAATCAGCA-CCACTAGGAGGCAGCACGTCCTCAGGTTAGGACCTTACTTGCTCC------CTCAGTGGATGGA-TGCAC-TGGTATTCTGGGCAGTGTGA--------CCACTCA-CCACGTCCTGGTAGCCCCTAAGCTGTCCACGCCCCTTCCAGTCCTGACAATGGGGAGTTGACTGGGTAACCCACAGCTTA a score=14101.0 s hg17.chr17_random 1877663 126 + 2618010 GTGGGCACTCGAAACGCTCCTCGAAG-GACTCACAGGCCCCATGGGGGCCAGGTAAGGCCGTGTGTTTACAGGGAGTTGGCTCGGGGCTGGGTACTG--CTGTGCACACTGGCTGCCAGGC--GGCAGCTG s panTro1.chr19 81133262 126 + 82489036 GTGGGCACTCGAAACGCTCCTCGAAG-GACTCACAGGCCCCACGGGGGCCAGGTAAGGCCGTGTGTTTACAGGGAGTTGGCTCGGGGCTGGGTACTG--CTGTGCACACTGGCTGCCAGGC--AGCAGCTG s mm5.chr11 120213493 96 + 121648857 GG----ACACCGAGTGTCTTCAAACA-GCCTAACAGGCCCCA--GGGAACTAACAATGCTGAG-----ACATGGGG--GGCGGGGGGGTGGCT----------------TGGCACCTAG----AACAGCT- s canFam1.chr18 30339432 128 + 66173745 GTAGGTATCCCAACCCCTCAGCAAAACACCCCACAGGTCCCC-GGGGAGCAAACAAGGCCATGTGGTT--AGAGACTTGGCTCAGGGCCCGGCACCAGCCAGCGCCCACTGGCAGCGAGCCCAGGCAGCTG a score=0.0 s hg17.chr17_random 1877789 6 + 2618010 GGCTGG a score=229.0 s hg17.chr17_random 1877789 6 + 2618010 GGCTGG s panTro1.chr19 81133388 6 + 82489036 GGCTGG s mm5.chr11 120213589 1 + 121648857 -----A a score=46659.0 s hg17.chr17_random 1877795 191 + 2618010 TTTATTAC-TGGAACACCCTCCCCNTGCTCNCTCC---TCCCCGGGGAGGCCAGCCCTGCGCCAGCATCTCNCTGCACCAGCCCACCCACCAGGAGGCGCCNTGTGGGGCC-----------------ACTCTTCTGGGAAAGCGTNGTTCCTGGAATAAATTCTGGTTTCGCTTC-CAACAGGAACAGGAATAGAGCTCCCTGTCTGGCCTG s panTro1.chr19 81133394 186 + 82489036 TTTATTAC-TGGAACACCCTCCCC-TGCTC-CTCC---TCCCCGGGGAGGCCAGCCCTGTGCCAGCATCTC-CTGCACCAGCCCACCCACCAGGAGGCGCC-TGTGGGGCC-----------------ACTCTTCTGGGAAAGCGT-GTTCCTGGAATAAATTCTGGTTTCGCTTC-CAACAGGAACAGGAATAGAGCTCCCTGTCTGGCCTG s mm5.chr11 120213590 166 + 121648857 TTTCTCAC-TG-----CCCTGTCT-TGCCTGCGCC---TCCCTGGGGAGACTTGCCTTGC-----------------CCGGCCCACAC-CCTGGAGATGCC-TCTGGGGGCCATTTGAGCCCCGGAATACTCTTCTGGGAAAGCAT-GTTCCTGAAATAAATTCCATTTTGGCATCTTCTCAGGAACAGGA-----------------GCATT s rn3.chr10 109947680 165 + 110733352 TTACTCAC-TG-----CCCTGTCT-TGCCTGTGCC---TCCCTGGGGAGGCTTGCCTTGC-----------------CCAGCCCACAC-CCAGGAGAGGTC-TCTGGGGGCCACTTGAGCCCCGAAT-ACTCTTCTGGGAAAGCAT-GTTCCTGAAATAAATTCCATTTTGGCAACTTCTCAGGAGCAGGA-----------------GCATT s canFam1.chr18 30339560 157 + 66173745 TTTATTACATG-----ACTTGTCC-TTCCTGCGCCCTGTCCCTGGGGACCACCCCCCCATGCCGA------------AGAAGACACCT-CCTGGAGTCACC-TGTAGGGCC----------TCAGAATACTCTTCCAGGAAAGGGT-GTTCCCAAAATAAATTC--GTTTGGCTAT----------CTGGG-------------CCTGGCCTA a score=26903.0 s hg17.chr17_random 1877986 96 + 2618010 CCAGGGCAGCTTGCAGGTTTGAAGGTCAAGTGCACGTGGCTCTCTCCTGGGCC----CAGCGGCAC----CCCCTTCTTCTGGA----CAGGGGAGGAGCCA--GCTCCT-- s panTro1.chr19 81133580 96 + 82489036 CCAGGGCAGCTTGCAGGTTTGAAGGTCAAGTGCACGTGGCTCTCTCCTGGGCC----CAGCGGCAC----CCCCTTCTTCTGGA----CAGGGGAGGAGCCA--GCTCCT-- s mm5.chr11 120213756 85 + 121648857 CCAGGGCTGTTTCCATGATTGAAGGTCAAATGCGACCAGGTCTCTCTTGGGTC----CAGCAG---------CCCTGGCCTGGG----CAGCCAAGGAGCCA---------- s rn3.chr10 109947845 92 + 110733352 CCAGGGCTGTTTCCACGATTGAAGGTCAAATGCGACGAGGTCTCTCCTGGGCCCGCTCAGCAG--------------CCCTGGG----CAGTCAAGGAGCCAATACTCCT-- s canFam1.chr18 30339717 82 + 66173745 GCAGGGC--TTTCCAGGTCTGAAGGTCAAGTGCGCCTGGGTCTCTC-GGGGCC----CAGTGG-CC----ATCCTTCCCCTGGG--------------GCCA--GTGTGT-- s danRer1.chrNA 214461976 96 + 390413307 CCTGGGCAGCTTGCTGG------GGTCAAACTCCCCTAGGTGG----AGGGCC----AGGAGGTACCGTACAGCCTCTACTGCAAGTCCAGGGAGAGAGGTG--GACCCCCT a score=-20862.0 s hg17.chr17_random 1878082 151 + 2618010 ---------AGAGGGGCCACAGTGCCCCAGAGGGTGGGTTCAGGG-------TGGTGC--CTACTAC------------CTCTGCGGCCCCCTGGGCAGCCC-CTGTGG--CAGAACAAGGGTAGTGATATCAGGCAGCC-CAGCCT-CTCCCTCCAGAATGCC----CTCCCTGC--CACCACCTGCCCTA s panTro1.chr19 81133676 151 + 82489036 ---------AGAGGGGCCACAGTGCCCCAGAGGGTGGGCTCAGGG-------TGGCGC--CTACCAC------------CTCTGCAGCCCCCTGGGGAGCCC-CTGTGG--CAGAACAAGGGTAGTGGTATCAGGCAGCC-CAGCCT-CTCCCTCCAGAATGCC----CTCCCTGC--CACCACCTGCCCTA s mm5.chr11 120213841 68 + 121648857 ------------------ACAGTGCTCC-----------TCAGAG-----------------------------------TCCATAGC-----------------ATGG--CTGAAGAGTGCTAATG-----------------------CCTTCCAGAG------------------CTCCACGTGGGCAA s canFam1.chr18 30339799 108 + 66173745 --------------AGGTCCAGGGCCCCCA---------CCCGGA-------GGGGGC--------------------------TGGTCCCTTGA-----------------AGAACACAGGAAG---------GCTGCCTCAGCCTCCCTCCTCCAGAAACCCCCCACCCTCTGC--CTCCCAGTGCCCCC s danRer1.chrNA 214462072 168 + 390413307 GGGTAGCTTGCTGGGGGTCAGAGGCCCCTGGGTGGAGGCCAAGGGGTTACCCTGGGGCCTCTACTGCAAGTCCAGGGAGAGTTGTGGACCCCTGGGTAGCTTGCTGGGGGTCAGAGGCCCCTAGGTG-------GAGGCC-AAGGGGGCACCCT----GGGGCC----TGTACTGCAAATCCAG-------- a score=31272.0 s hg17.chr17_random 1878233 239 + 2618010 GGAGACCTGAGCACGCCC---AGTGGCTTA----GACTG---AGAATTTCTGGGCTTGAGAAGCCTTCGCCATGATCTGGGGTTTCC------AGCCCTGCCCGGGAGCTGG-CTGTGCATGTGTGCCGC-AGGGGCAGAGG--CCTGACAGACCACCAAGAGGCCACGCCCAGTGCCG-CCGCCTTTATTCACAGACCCTCGAGCTCCACAGCCACACAGACACTTAG----CTT-----TCAGAGGGCACA-----------GGAAGGAAAAGGGACC-- s panTro1.chr19 81133827 238 + 82489036 GGAGACCTGAGCACGCCC---AGTGGCTTA----GACTG---AGAATTTCTGGGCTTCAGAAGCCTTCGCCATGATCTGGGGTTTCC------AGCCCTGCCCGGGAGCTGG-CTGTGCATGTGTGCCGC-AGGGGCAGAGG--CCTGACAGACCACCAAGAGGCCACGCCCAGTGCCG-CCGCCTTTATTCACAGACCCTCGAGCTCCACAGCCACACAGACA----------TTAAGGGTCAGAGGGCACA-----------GGAAGAAAAAGGGACC-- s mm5.chr11 120213909 193 + 121648857 TGTAACTTTACTACCCAC----------CA----GACTA--------CTCTGG-------------------CGGCCAGGGGCTTAC------AGACCTGCAAGGCAGCT---------CTGCGGGCTTC-AGGGTAGGA----CCTGACAGACTGCCATGGAGCCACTTCCAGTGCCA-CCGCCTTTATTCACAGACCCTCAGTCTCCAAAGC--TACAGACACTTGG----ATT-----CAAGAGGGCAC--------------AAAAAAAGGGGGCC-- s rn3.chr10 109948031 155 + 110733352 GGGGGCCTGG--------------GGCTCA----GAC----------CTACAG---------------------------------------------------------------------TGGGCTTC-AGGGTAGGG----CCTGACAGACTGCCAAGAAGCCACTTCCAGTGCCACCCACCTTTATTCACAGACCCTCGGTCTCCAAAGCTACATAGACACTTGG----ATT-----CAAGAGGGCAC--------------GAGAAAAGGGGGTC-- s canFam1.chr18 30339912 220 + 66173745 GGAGGCTTGAGCACCCCCTAGAAGAACTCA--GGGACCAGATGGAATTTCTGG-GTTCAGCAGCCTGGAGCACGACCCTGGACGTCC------AGCCCTGA--------------------GTGGGCTGC-TGGGACAGGGG--CCTGACAGA---CCAAGGGGCCA-ATCCAGTGCCACCTGCCTTTATTCACTGGCCCTTGGGCTCCAGT----CATAGACACTTGG----CTT-----TTGGAGGGCACA-----------GGAACAACAGGGGACC-- s danRer1.chrNA 214462240 253 + 390413307 GGAGAGTTGTGGACCCCT--GGGTAGCTTGCTGGGGTCA---AAGGCCCCTAG---GTGGAGGGCCAGGAGGTACCCTAGGGCCTCTACCGCAAGTCCAGGGAAAGAGGTGGACCACCTGGGTAGCTTGCTGGGGTCAGAGGCCCCTGGGTGGAGGGCAAGGGGGC--TTCCTG------GGGCTTTTACTGCAAGTCCATTGAG----AGA----GGTGGACCCCTGGGTAACTT-----GCTGGGGTCGTAGGCCCCTAGGTGGAATGCCAGGGGGCACC a score=11103.0 s hg17.chr17_random 1878472 112 + 2618010 TGGTGACCCTCCCAGCACAC--CCCAGA---GCCAAGACAGACCCAGCAGCAGCACC---TCAGGGTCAGCCTGGGTGCCCCTGCCCAGGGGC--CACTGTGACCGCA-----------GACACCAGGAGGCC s mm5.chr11 120214103 129 + 121648857 TGGTAATCCTCCCAGCACAC--CCCAGAA-AGCCAGGACAGGCCTGGCAGCACCACTCCTTCAGGGTCAGCCTTAATGCCC-TGTCCAAGGGCACTGCTGTGACCACAACAGTGTCACAGGTACCAGGACACA s rn3.chr10 109948187 126 + 110733352 TGGTGATCCTCCCAGTACAC--CCCAGAA-AGCCAGGACACGCCTGGCAGCACCACTCCTTCAGGGTCAGCCTTAGTGCCC-TGTCCAAGAGCACTGCTGTGACCACA---GGGCTGCAGGTACCAGGACAAA s canFam1.chr18 30340133 98 + 66173745 TGGTGACCACCCTGGCACATAGTTCGGG---GCCAGGA----------------------------TCAGCCCCA-TGCCCCTGTCCAAAGGGACTGCCGGGGCCACG---GGGCCGCACACAGCAAGGGGGT s danRer1.chrNA 214462493 109 + 390413307 CAGTGGCCTCTACTGCAAGT--CCAGGGAGAGTTGTGGACCCCTTGGTAGCTTG------CTGGGGTCAG----AGGACCCTAGGTGGAGGGC----CTGGGGGCACC-CTGGGGCGTATACTGCC------- a score=25553.0 s hg17.chr17_random 1878584 66 + 2618010 AGGCCTGGTTGCTGGGGACCCCCTTGGGGGGC-----CCGGCAGTATCCTAGGCCCAAAGAGCTGGTGCCA s panTro1.chr19 81134165 66 + 82489036 AGGCCTGGTTGCTGGGGACCCTCTTGGGGGGT-----TCGGCAGTATCCTAGGCCCAAAGAGCTGGTGCCA s mm5.chr11 120214232 54 + 121648857 AGGCCTGGTTGC----------CCTCAGAGAG-----CCAGCACTGTCCTAGGCTC--AGAGCTGATTCGA s rn3.chr10 109948313 54 + 110733352 AGGCCTAGTTGC----------TCTCAGAGAG-----CCAGTACTGTCCTAGGCCC--AGAGCTGATTCGA s canFam1.chr18 30340231 71 + 66173745 AGGCCTGGCTGCCCAGGACCCTCGTGGAGGGGGGTGCTCGGTGGCATCGCAGGCCTGGAGAGCTGCTGCCA s danRer1.chrNA 214462602 66 + 390413307 AATCCAGGGAGAGAGGTGGACCCTTGGGTAGC-----TTGATGGGGTCATAGGCCCCTAGGAGTAGTGCCA a score=137319.0 s hg17.chr17_random 1878650 480 + 2618010 TCTTGAAGCTGATTCAGGGAANG---AGGCCAGGCTGGACGGTAGGG-GTAGGTGTGAGAAGCTCCCCAGCGTGTCCAGGCCACGGGAGCAGCAAGGGTCTGCGGGGAGC-CNAGGCTGGATG-GGGTGGGGCTGCCCTTGTCCTGTATCCTGACCACTTCAAGGACAAAACCAGCCCAGTCCCAGCAGCNTGGGAGGCAGCAGAGGCTCNTTCTTCTCCCCTCCTGATCCTGCAGTGGCCAGGGGCAGGAGGGTGAGGG----------GAGAGGAGAGAGGTCAGNGTCAGGGCCCC----TGGGGGC----CAGGCAGCTTCAAAAATGCAGCCAGGTGGCTGGGGG---AGGGCAGGAGGG----TGGGCAGGGCCCAGACCCCC----ATGATGGGGGCAGCCTGA-GACCCCCAAGGATGAAGGAAGGGGGCTTGGGAAGGAGAGGCA-GGCCTCAGCCGTCAGTCACGCC------AGTGCTGGGATCTGCAGCCC-GCTGGAGCAAGGCAC--------CCCCA s panTro1.chr19 81134231 478 + 82489036 TCTTGAAGCTGATTCAGGGAA-G---AGGCCAGGCTGGACGGTAGGG-GTAGGTGTGAGAAGCTCCCCAGCATGTCCAGGCCACGGGAGCAGCAAGGGTCTGCGGGGAGC-CCAGGCTGGATG-GGGTGGGGCTGCCCTTGTCCTGTATCCTGACCACTTCAAGGACAAAACCAGCCCAGTCCCAGCAGCCTGGGAGGCAGCAGAGGCTCCTTCTTCTCCCCTCCTGATCCTGCAGTGGCCAGGGGCAGGAGGGTGAGGG----------GAGAGGAGAGAGGTCAG-GTCAGGGCCCC----TGGGGGC----CAGGCAGCTTCAAAAATGCAGCCAGGTGGCTGGGGG---AGGGCAGGAGGG----TGGGCAGGGCCCAGACCCCC----ATGATGGGGGCAGCCTGA-GACCCCCAAGGATGAAGGAAGGGGGCTTGGGAAGGAGAGGCA-GGCCTCAGCCGTCAGTCACGCC------AGTGCTGGGGTCTGCAGCCC-GCTGGAGCAAGGCAC--------CCCCA s mm5.chr11 120214286 441 + 121648857 CTCTGAAAGTGGGGCAAGGAA-----AGGTCAGGATGGACAGTGGGG-GTGGAAGCG-GGAGCTCCCCA-CATGTCCAGGGCAGAAGAAGAGCAAGTCTCCATGGAGAGAGCCACACTGGATGCAGGTGGGACTGCACATGTCCTACTTTCTGGTCATTTCAAG---------------GTTCCAACAGCC---GAAGAAACAGAGGTCCC--CTTTTTCCTTCCTGACCTTA-AGTAGCCAGGAAGGAGAGGGGCAAGGCATGGCAGGTAACAGCAGAGAGGGCTA-GATAGGTC----------GGGC----CAGGTGCTACCCAAGATGCAGC----TGGCCAGGGGAAAAGGACAGGGGCGGTTACAGCCAGGCCCCTGTTCCCC--CAGTGACAGGGGCAACTTGA-GACCCTGGAGAGGAAAGGAAG----------------------GGCCCTGGTCATCAATCCTGCT------GGCTCTGGGATC-ACGGCCT-GCTAGAGCA---CACT-------CTTCC s rn3.chr10 109948367 448 + 110733352 CTCTGAAACTGGGGCAAGGAA-----GGGTCAGGATGGACAGTGGGG-ATGGAAGGG-GGAGCTCCCCA-AATGTCCAGGGCAGAAGAACAGCAAGTCTCCATGGAGAGAGCCACACTGGATGCAGGTGGGACTGCACATGTCCTACTTTCTGGTCACTTCAAG---------------GTTCCA-CAGCC---GAAGAAACAGAGGTCCC-CTTTTTTCCTTCCTGACCTTA-AGTAGCCAGGAAGGAGAGTGGCGAGGCATGGCAGGTAACAGCAGAGAGGGCTG-GGTAGGTA----------GGGC----CAGGTGCTACCCAAGATGCAGC----TGGCCAGGAGAAAAGGACAGGGCTG-ATACAGTCAGACTCCTATTCCCC--CAGTGACAGGGGCAACTTGA-GACCCTGGAG----------------------AGGACAGGTAGGGCCTTGATCATCAATCCTGCT------GGCTCTGGGGATTACGGCCT-GCTAGAGCT---CACTCTCCTCCCCCCC s canFam1.chr18 30340302 470 + 66173745 TCCTGAAGCTGATGCAGGGGA-GGACGGGCCAGGCTGGACAGCAGGGTGAAGAAATA-GCCGCTCCCCAATGTGTCCAGGATGGAAAAGCAGCAGAGG---GTGGGGGGG--GACACGGGGTG----TGAGA------------------CGGGCCACCTTAGG-----GACAAGCCTGGGCCCACCAGCCCGGGGGACAGCAGAGGGCCC--TCATTGCCTTCCTGACCTTGGAAAAGCTGGGGGGGAGGGGCGGTGGAAGGTGATGGGAAGCGGAGGGGAGTCAGGGTCAAGGCCCTGGGGTGGGGGCAGAGCACGTAGCTCT--AGACACAAC-------CAGGGGG---AGAGCCGGGGCT------GGCGGGGCCCAGACCCCCCCCAGGGACAGGGGCAGCCTGACGGCCCCTGAGAAGAAAGGAGG-GGCCTTGGGGAGGAAGGGCA-AGCCCTGGCCACTGACCACGCCCCTCCTGGTCCTGGGGTTGACAGCCCTGCGGGCGCA---CGTCCCCC---CCCCT a score=22670.0 s hg17.chr17_random 1879130 66 + 2618010 TCCCAGGGGCAGGN-------ACCACAGGACAGGAGGGAACCGACACCTCGCAC----CCTGATCTTCCGGAGGCC----------------G s panTro1.chr19 81134709 65 + 82489036 TCCCAGGGGCAGGG--------CCACAGGACAGGAGGGAACCAACACCTCGCAC----CCTGATCTTCCGGAGGCC----------------G s mm5.chr11 120214727 66 + 121648857 CCCCAGGAGCAGCG--------CCACAGGAACACAGGAAACCACCATCAAGTGCA---CCTGAGCTTCTGGAGGCC----------------A s rn3.chr10 109948815 68 + 110733352 TCCCAGGAGCAGCG--------CCACAGGAACAGAGGAAACCAACATCAAGTGCA--CCCTGATCTTCTGGAGGCC---------------AG s canFam1.chr18 30340772 61 + 66173745 TCCCAGGAGCTGGG-------CCCACAGGA--------GACCACCATGAGGCGGC--ACCCGGTCTCCCAGAGGCC---------------AG s galGal2.chrUn 63526209 88 - 165033910 TCCCACGGGCGGAGTGCAGTAACCAGAGGA-----GGAAATCAACACAAAATCTCAACTTAAATCTGCTTGAGGACTTTAAAGACCGGCCGAC a score=103315.0 s hg17.chr17_random 1879196 127 + 2618010 GGGAGGGGCACCGG-GCGCTCTAGGACTTCTTGGCATCCTGCGTGCTCCGGCGCTTCANGGTCACTCAGGTCGATGGGCTNGAAGGCTGC-CAGGGGACAACGCGGTAGGNTGG---------TGGGCACAGGCCCCT---- s panTro1.chr19 81134774 125 + 82489036 GGGAGGGGTGCCGG-GCGCTCTAGGACTTCTTGGCATCCTGCGTGCTCCGGCGCTTCA-GGTCACTCAGGTCGATGGGCTTGAAGGCTGC-CAGGGGACAACGCGGTAGG-TGG---------TGGGCACAGGCCCCT---- s mm5.chr11 120214793 125 + 121648857 GGGGAGGGCGCCAG-GAGCTCTAGGACTTCTTGGCATCCTGCGTGTTCCGGCGCTTCA-GGTCACTCAGGTCGATGGGCTTGAAGGCTGT-TGGTGGACAGTCTGGTTGG-TGC---------TGGGAAGAGGACCCC---- s rn3.chr10 109948883 121 + 110733352 GGGAGGGGCGCCAG-GCACTCTAGGACTTCTTGGCATCCTGCGTGTTCCGGCGCTTCA-GGTCGCTCAGGTCGATGGGCTTGAAGGCTGT-TAGTGGACAGTCGGGTTGG-TGC---------TGGGAAGAGGA-------- s canFam1.chr18 30340833 135 + 66173745 GGGAGGGACCCCAGTGCCCTTCAGGACTTCTTGGTGTCCGGCGTGTTCCGGCGCTTCA-GGTCACTCAGGTCAATGGGCTTGAAGGCTGT-GGGGGGATAGAGTGGTCAG-TGGGGGCACAGATGGGAGGCAGGGCCT---- s galGal2.chrUn 63526297 122 - 165033910 GAGCGGGGGACCTG----CCTTACGACTTCTTTGCATCTTGTGTGTTCCTCCGCTTCA-GGTCGCTCAGATCCACGGGCTTAAACGCTGCACAGAAGAGAGCACACGCTG-TGG---------C-GGCAGAGGCCTCT---- s fr1.chrUn 255086747 127 - 349519338 GTGAGCATCACGAG-AAGGACTAGGACTTTTTGGAGTCCTGTGTGTTGCGTTTTTTGA-GGTCGCTCAGGTCCACAGGCGTGAAAGCTACAGAACACACAACACCGTTAG-------------CCAGCCCAAACGATTCATT a score=2705.0 s hg17.chr17_random 1879323 6 + 2618010 CCTGCC s panTro1.chr19 81134899 6 + 82489036 CCTGCC s mm5.chr11 120214918 6 + 121648857 CCCCCC s rn3.chr10 109949004 4 + 110733352 --TACC s canFam1.chr18 30340981 6 + 66173745 CCTCCC s fr1.chrUn 255086874 6 - 349519338 TGTGTC a score=1054.0 s hg17.chr17_random 1879329 2 + 2618010 CA s panTro1.chr19 81134905 2 + 82489036 CA s mm5.chr11 120214924 2 + 121648857 CA s rn3.chr10 109949008 2 + 110733352 CA s canFam1.chr18 30340987 2 + 66173745 AA a score=-25686.0 s hg17.chr17_random 1879331 44 + 2618010 T----------------GAGGCCC----------------------GGCC----TGCCGGC--------CCAGC------CCTG-------------CCCCCAGGTCAG--CCCC s panTro1.chr19 81134907 44 + 82489036 T----------------GAGGCCC----------------------GGCC----TGCCGGC--------CCAGC------CCTG-------------CCCCCAGGTCAG--CCCC s mm5.chr11 120214926 99 + 121648857 TCCGCTTCCCACTACTAGAGGCTCCCAAACCCAGGTGCCTTGGAAAGGACACAGTGCAGGCAT------TCAGCA-GAAGCCTGGTCAG------CTCCTCCAGGTCGG---CCC s rn3.chr10 109949010 99 + 110733352 TCCACTCCCCACTACTGGAGGCTCCCAAACCCAGGTGCCTTAGAAAGGACACAGTGCAGGAAGGAAGCAGAAGC------CTTT-TCAG------CTCCTCCAGGTCTA---CCT s canFam1.chr18 30340989 71 + 66173745 G--------------TAGAGG-------------------------GGCCTTCCTGCCCGCCCC-----CCAGCACTGCCCCTGGCCAGGCCACTCCCTGCTAGGTCCGCTCCTC s galGal2.chrUn 63526470 11 - 165033910 --------------------------------------------gAGGGC-------------------ACGGC----------------------------------------- a score=133610.0 s hg17.chr17_random 1879375 117 + 2618010 CACTCACTCTTCAGGCTGGGGTTAGGGACCTTCTCCACATACTCCTCCACCAGGCCCCGCTCGCCACCCGGCACCTGGCCTCGCAGGTCTCGCTCCACACCCTGCCAGGCTGCAG-AG s panTro1.chr19 81134951 117 + 82489036 CACTCACTCTTCAGGCTGGGGTTAGGGACCTTCTCCACATACTCCTCCACCAGGCCCCGCTCGCCACCCGGCACCTGGCCTCGCAGGTCTCGCTCCACACCCTGCCAGGCTGCAG-AG s mm5.chr11 120215025 118 + 121648857 TACTCACTCTTCAGGCTGGGGTTGGGGACTTTCTCCACATACTCCTCCACTAGGCACCGCTCACCACTGGACAGCTGGCTGCGCAGGTCTCGCTCAACACCCTGCCAGGCTGCAGCAG s rn3.chr10 109949109 118 + 110733352 TACTTACTCTTCAGGCTGGGGTTGGGAACTTTCTCCACATATTCCTCCACTAGGCACCGCTCCCCACTGGACAGCTGGCTGCGCAGGTCTCGCTCAACACCCTGCCAGGCTGCAGCAG s canFam1.chr18 30341060 118 + 66173745 CACTCACTCTTCAGACTGGGGTTAGGGACCTTCTCCACGTACTCCTCCACCAGGCCCCGCTCGCTGCCTGACATCTGGCTCCGCAGATCTCGCTCCACGCCCTGCCAGGCTGCCAGAA s galGal2.chrUn 63526481 114 - 165033910 CGCTCACCTTTCATGCTGGGGTTCGGCATCTTCTCCACGTACTCCTCGACCAGGCCGCGCTCGGAGCC---CATCTGGCTGCGCATGTCGCGCTCCACGCACTGCCAGGCTGCGG-GG s fr1.chrUn 255086897 114 - 349519338 CACTCACAATGTAGGTTAGGATTTGGGCTCTTCTCCACGTACTCTTGTGGTCCATTCCGTTCACTATTTTGTGTTGATCTG---ATGTCTCTAAGTACACACTGCCAAGCTGTGA-AG a score=2744.0 s hg17.chr17_random 1879492 6 + 2618010 GCAGAG s panTro1.chr19 81135068 6 + 82489036 GCAGAG s mm5.chr11 120215143 6 + 121648857 ACAACA s rn3.chr10 109949227 6 + 110733352 ACAACA s canFam1.chr18 30341178 6 + 66173745 GCAACG s galGal2.chrUn 63526595 6 - 165033910 ACACAG a score=-3223.0 s hg17.chr17_random 1879498 43 + 2618010 AGTGGTGTGCTCAGGGCCCCCTGC------CCCAGGGGGTGGCATCCAC s panTro1.chr19 81135074 43 + 82489036 AGTGGTGTGCTCAGGGCCCCCTGC------CCCAGGGGGTGGCATCCAC s mm5.chr11 120215149 41 + 121648857 GGTTCAGCGCTCAGCAGTACTCAA------GCCAACAG--AGCATTCTG s rn3.chr10 109949233 28 + 110733352 GGTTCAGCG---AGCGCTC------------------AGCAGTCCTCAA s canFam1.chr18 30341184 47 + 66173745 AG--GTGGCATCAGAGCCCCCAGATGGCTGCGCAGCGGGCCGGGTCCAA a score=0.0 s hg17.chr17_random 1879541 15 + 2618010 GTCACGAGAGTGCCT a score=1920.0 s hg17.chr17_random 1879541 8 + 2618010 GTCACGAG s panTro1.chr19 81135117 8 + 82489036 GTCACGAG s mm5.chr11 120215190 8 + 121648857 GTCTCGTG s rn3.chr10 109949261 8 + 110733352 GCCATCAG a score=611.0 s hg17.chr17_random 1879549 7 + 2618010 AGTGC---CT s panTro1.chr19 81135125 7 + 82489036 AGTGC---CT s rn3.chr10 109949269 10 + 110733352 AGAGCACTCT a score=10280.0 s hg17.chr17_random 1879556 90 + 2618010 GCCCTCAGCTC--CTGCCCTCCCAGATCCTCTTCTCCCTCAGAAGTGTCCTCCATGCTCCCCCACAGCCCTCTGNCCCACCCCAGCCTCACT s panTro1.chr19 81135132 89 + 82489036 GCCCTCAGCTC--CTGCCCTCCCAGATCCTCATCTCCCTCAGAAGGGTCCTCCATGCTCCCCCACAGCCCTCTG-CCCACCCCAGCCTCACT s rn3.chr10 109949279 72 + 110733352 GCTCCTGATGG--CAGCTCAAGCAGACCGTC-CCTCCCTCAGCAG-------CATG--------CAGCCCCCGGCCCCA--CCAGTCTCCCT s canFam1.chr18 30341231 77 + 66173745 GCGGTCAGCCCCGCACCCCTCCCCGGCCCTC----CCCTCA-----------CCCCCCACCTCACAGCCCGCAGCCCCCCCGCCGGCCTGCT a score=-529.0 s hg17.chr17_random 1879646 2 + 2618010 -CA s panTro1.chr19 81135221 2 + 82489036 -CA s canFam1.chr18 30341308 2 + 66173745 CC- a score=5169.0 s hg17.chr17_random 1879648 49 + 2618010 ---CCTGCAGACCCC------GTCCCCGCTCCTCTGGCAGGCCTGTCCCTTCCCCGCA s panTro1.chr19 81135223 49 + 82489036 ---CCTGCAGACCCC------GTCCCTGCTCCTCTGGCAGGCCTGTCCCTTCCCCGCA s mm5.chr11 120215374 50 + 121648857 ---CTTGGAGAGCCCCAAACTGTCCTCCCTCCTGCGTCAG--CTCCTCCTGCCCT--- s canFam1.chr18 30341310 43 + 66173745 CGACCTGAGG---CT------GTCCTCAA------AGCACCCCTCTCCCCTCCCTACA a score=960.0 s hg17.chr17_random 1879697 18 + 2618010 AGATGACCAGGACTGTGG s panTro1.chr19 81135272 18 + 82489036 AGATGACCAGGACTGTGG s mm5.chr11 120215424 3 + 121648857 ---------------TGC a score=4039.0 s hg17.chr17_random 1879715 69 + 2618010 TCAGAGGGACCCCTATGACCCTACC-------CCAGGCTTCCCTGCGC---CTCGGAGG-CAGCGCATCCTCCTCAGCTA s panTro1.chr19 81135290 69 + 82489036 TCAGAGGGACCCCTATGACCCCACC-------CCAGGCTTCCCTGCGC---CTCGGAGG-CAGCGCATCCTCCTCAGCTA s mm5.chr11 120215427 35 + 121648857 TCAGAGG-------------------------CCAGTCCCTTCTGTGC---------AA-TAGTGCCACC---------- s rn3.chr10 109949507 80 + 110733352 TTGAAGAGTCCCAAACTGTCCTACCTCCTGCATCAGCTCCTCCTGCCCCTGCTCAGAGGCCAGTCCCTTCTGTGCAATGG a score=8149.0 s hg17.chr17_random 1879784 455 + 2618010 GGCCTCTATCTTTCCCACCTCA--------TCCACGCAC-CTCCCCGGCCCCAGCACACGGCACACTCCCCTAATCCCAGACA-ACCACCTCCCGGC-CACTTCTGCAACACGCCCGTTCATGGCTGGATGCGTGCCTGTCTGTCTTCAAAGNGCCCCTCCCTTTCCCCAGCAAACTC-CTCCAGTGCTGCTAGCATGGATGACTGGCTCCCAG-TGCGGCCTCTATCTGTGGCATGGCCCAC-CCCCAGCCCCTCCTCCCGGG-------CTCCCCCCATGATCAGAACCAGGTCTCCTCTCTACACAAGGTCCCCTCGGCCACCCCTACCC----GCCTGGGCCCTGAAGGCTGTGGACACAGTGATGGGGCTATCTGTGCCCTGGAGGGGCAGGGGCAGGGGCCGCAGGAGGTTCCTCGGAGCGTGGGTCCTGGGCTGGGGGCAGAGCTGACTCCGTCAAGGACAGGGCAGGAGCTG s panTro1.chr19 81135359 452 + 82489036 GGCCTCTATCTTTCCCACCTCA--------TCCACGCAC-CTCCCCAGCCCCAGCACATGGCACACTCCCC-AATCCCAGACA-ACCACCTCCCGGC-CACTTCTGCAACACGCCCGTTCATGGCTGGATGCGTGCCTGTCTGTCTTCAAAG-GCCCCTCCCTTTCCCCAGCAAACTCGCTCCAGTGCTGCTAGCATGGATGACTGGCTCCCAA-TGCGGCCTCTATCTGCGGCATGGCCCAC-CCCCAGCCCCTCCTCCCGGG-------CTCCCCCCATGATCAGAACCAGGTCTCCTCTCTACACAAGGTCCCCTCGGCCACCCCTACCC----GCCTGGGCCCTGAAGGCTGTGGACACAGTGATGGGGCTATCTGTGCCCTGGAGGGGCAGGGGCAGGGGCCGCTGGAGGTTCCTCGGAGCGTGGGTCCTGGGCTGGGGGCAGAGCTGACTCCGTCAAGGACAGGGCAGGAGC-- s mm5.chr11 120215462 334 + 121648857 ---------CGTTCCCACCTCT--------CTTACCCAC-CCTACC--TCCCAGCACAT------TTGTTC-AATTCTAACTGTATCACCT-CTGTC-CACTTTAGTGAAAC-TATGTTCATAGCTA-------------------------------CCTCCTCCCCCAGGAAGC---CTCCAGGCCT---------GAAGACCATCTCCCAGATCCTGCCTCT-TCTGGGCTTCCACCCACTCCCCATGCCTTCTTCTTGCG-------TT--------------------GTCACCC-------CAATGTCCCT----CTATCACCAGTC----TTGCTGGTTCTAGAGTTTAAGGCCACTGAAGTATGGTCCCCTCCTCACTGAGGGTCTAAAGAGTGGAA----GGGTGGT-----GGGGCATTCACGCACGGCAGGCAGTAGAGC-------------------ACAGACAC-- s rn3.chr10 109949587 297 + 110733352 ---------CCTCCTCAAACCACAGAGGGTCCCACCCATGCCCACC--TCTCAGCATAT------TCGTTCTAATCCTAACCATATAACCT-CTATG-CACTTTAGTGAAAC-TCTGTTCACA-----------------------------------CTACCTCTTCCAGGAAGC---CTCCAGGCCT---------GAGTACTGTCTCCAAGATTCTGCCTCT-TCTGGGCTTCCACCAACTCCCCATGCCCTCT------G-------CTTCTGTT--------------GTCACC--------CAATGTCCCT----CTGTCACCAGTCTACTGTCTGGGACCCAAAAAGAGTGGA-AGGGTGGTG-GGTCATTCACCCAC---------------------------------------------------AGCAGGCAGTAAAGC---------------------AGACAC-- s canFam1.chr18 30341407 269 + 66173745 GGGCTCTCGATCCTCCACTCAG--------GCTCCGCAC-CTTTCC-------------------CTGCTC---CCCCAGCC--CCTGCCTCCTGGCACACGGTCACGACAC--------ATGGCTG-------------------------------CCCCTACT-------------TGCCCGTCCT-----------------GCACGCGGCTCCCGCC----CCTGCAGACCTGCCCAGCTCCCATGCTCCTCCCCCGAGGAGCTGCCTGCCCCCACTGGCAGCACCA-GTCTCCTCACCAGGCAAGTCCCCT----GTGGACCTGGCC------CCCGGCCCTGA----------------------------------------------GGGCGGGGTGCAGAGGAGGA-------------------GGGCTCTGGGGAGCTC----------------------------- a score=1723.0 s hg17.chr17_random 1880239 10 + 2618010 TGTGTGGCAG s panTro1.chr19 81135811 10 + 82489036 TGTGTGGCAG s mm5.chr11 120215796 3 + 121648857 -------CGA s rn3.chr10 109949884 3 + 110733352 -------CGA s danRer1.chr5 11333158 10 + 40038624 TGTGTGTCAG a score=0.0 s hg17.chr17_random 1880249 4 + 2618010 GCGC a score=2056.0 s hg17.chr17_random 1880249 4 + 2618010 GCGC s panTro1.chr19 81135821 4 + 82489036 GCGC s mm5.chr11 120215799 4 + 121648857 GCGC s rn3.chr10 109949887 4 + 110733352 GTGC s canFam1.chr18 30341676 3 + 66173745 -CCC a score=138040.0 s hg17.chr17_random 1880253 121 + 2618010 ACCCACCTTCGTAAATGAAGCGGACGTTCTCCTCGTGGGCTGGGGTGAAGATCTCGNCTGCTGCTGGGTGGGGAGCGGGGGCTGCTGGTCCTCTTGCCGTTGTACACGACTCTGGAGACGG s panTro1.chr19 81135825 120 + 82489036 ACCCACCTTCATAAATGAAGCGGACGTTCTCCTCGTGGGCTGGGGTGAAGATCTCG-CTGCTGCTGGGTGGGGAGCGGGGGCTGCTGGTCCTCTTGCCGTTGTACACGACTCTGGAGACGG s mm5.chr11 120215803 120 + 121648857 ACCAACCTTCATAAATGAAGCGCACATTCTCTTCGTGTGCCGGTGTGAAAATCTCA-CTGCTGTTGGTGGGAGAGCGGGGACTGCTATTCCTCTTGCCGTTGTAGACAACTCTGGAGACAG s rn3.chr10 109949891 120 + 110733352 ACCAACCTTCATAAATGAAGCGCACATTCTCTTCATGCGCTGGTGTGAAGATCTCA-CTGCTGTTGGTGGGAGAGCGGGGACTGCTATTCCTCTTCCCGTTGTAGACAACTCTAGAGACAG s canFam1.chr18 30341679 120 + 66173745 ACGTACCTTCGTAAATGAAGCGCACATTCTCCTCATGGGCCGGGGTGAAGATCTCG-GTGCTACTGGGGGGAGACCGGGGGCTACTGTTCCTCTTGCCGTTGTAGACGACTCTGGAGACAG s fr1.chrUn 255087565 120 - 349519338 ACTTACAATCATGTATAAATCGCACATTTTCCTCATGTGCGGGGGTGAAAAGCTCC-CCGCTGTTGGTGGGGGAACGTGGGCTGGAAGTCCGCTTGTAACTGTTCACCATCCTGGGAGCAG s danRer1.chr5 11333168 117 + 40038624 ACTTACTGTCATGGATGAAGCGCACATTTTCCTCATGCGCTGGTGTGAAAAGCTCT-CCTGTGTTCGTCGGTGACCGAGGGCTGGACGTCCTCTTGTACGTGTGC---ATTCTAGGTGTAG a score=8515.0 s hg17.chr17_random 1880374 15 + 2618010 GGGNAGCTGGGG---GAG s panTro1.chr19 81135945 14 + 82489036 GGG-AGCTGGGG---GAG s mm5.chr11 120215923 17 + 121648857 GAG-AGCTGGGGAAAGGG s rn3.chr10 109950011 15 + 110733352 GAG-AGCTGGGG--AAAG s canFam1.chr18 30341799 14 + 66173745 GGG-AACTGGGG---GTG s danRer1.chr5 11333285 14 + 40038624 AGG-AGCTGGAA---GAG a score=74029.0 s hg17.chr17_random 1880389 336 + 2618010 CCTGGCGCATGAGACAGGGCACACAGCAGGGTGGGAGCCCAC----------AACCCGCCCCGGTGGAGACCAGCCCACCTGCCTGAGACCCACCTGGTCATCGCGGGGGCGTCTGATCCTAGCGCTCCACCGCCAGATCCCCTCAGCCTCTGAAACAGAAGCCAGCGCAGGCATGGGACGCAGGGCCACCCTCTCCA----------GCACAGAAGGAGGGGGAGGCGCAG---GGCAC-----ACCTGCCTCCTNCCCNTTCAGATGTGAACAAAGTGCAT--GGTCCCTCTGCCTACCAGGGTGTCCCCCACAGGCTGGGGTCCAGCCACAGGCAGCCAGTGGGCTCCAGGCAACCCTACGAG s panTro1.chr19 81135959 334 + 82489036 CCTGGCGCATGAGACAGGGCACACAGCAGGGTGGGAGCCCAC----------ACCCCGCCCCGGTGGAGACCAGCCCACCTGCCTGAGACCCACCTGGTCATCGCGGGGGCGTCTGATCCTAGCGCTCCACCGCCAGATCCCCTCAGCCTCTGAAACAGAAGCCAGCGCAGGCGTGGGACGCAGGGCCACCCTCTCCA----------TCCCAGAAGGAGCGGGAGGCGCAG---GGCAC-----ACCTGCCTCCT--CCCTTCAGATGTGAACAAAGTGCAT--GGTCCCTCTGCCTACCAGGGTGTCCCCCACAGGCTGGGGTCCAGCCACAGGCAGCCAGTGGGCTCCAGGCAACCCTACGAC s mm5.chr11 120215940 259 + 121648857 CC--ATGTGTGAGGAGGGAGTCACAGGAGAGCTGGAGTC---------------CCAGCTCC------------CACATTCACCTGAGACCCACCTGGTCATTGCTGGGATGTCCAGTCCTAGTGCTTGGCTGCTGG--TCCTGCGGCCTACAAAACAGAAACCCA---AGGCACTGGA---GTTGTCGCCCTTCCCG-------------CAGAGGAAG--------------------------------------------------GAACAAACTCTGT--GGT-CTTGAGTCCACTGGAG----ATCCTCAGACTGGGCCCAAGACTTGAGTGGCCAGTGGGCTCCAAGCAATCCTGACAG s rn3.chr10 109950026 262 + 110733352 TCCCACGTGTGAGGAGAGAGTAACAGGAGAGATGGGGTC---------------CCAGCTCC------------CACACACACCTGAGACCCACCTGGTCATTGCTGGTACGTCTAGTCCTACTGCTCAGCTGCTGGA-TACTGCGGCCTATAAAACAGAAACCCA---AGGCACTGGA---GCTGTCATCCTTCCAG-------------CAGAAAAAA--------------------------------------------------GAACAAACTATGT--GGT-CCTGAGTCCACTGGGG----ATCCACAGACTGGGCCCTAGACTTGAGTGGCCAGTGGGCTCCAAGCAGTCCTGACAG s canFam1.chr18 30341813 340 + 66173745 CCCGGCACATGAGGGTGGGCTGGGGGCAG---CGGGGCCCACCCTCTCCCCTCCCCTCCCCCGGGGGAGGTCG-CGCCACTGCCCGAGACCCACCTGGTCATCGCGGGGGCGTCTGGTCCTTGCGCTGCACTGCCGGGTCCCCTCGGCCTCTGAAAGGGAAGGAGGGCCGGGAGCGGGA----CAGTCACCGTCTCCACGGGGCTACGGGGCTGCGGGGAGGGGAGGCTCGGGGAGGCGCGGGCGGTCTACTTCCT--CTCTCAAGCTCCCGACAAACTGCTCCGGGC-TCGCGGCCTACCAGGAACCCCTCCAGAGG---------------AGGCCACAAGCCGGGCAGACACAACCCCGTGAG a score=0.0 s hg17.chr17_random 1880725 10 + 2618010 GTAGCAGAGA a score=600.0 s hg17.chr17_random 1880725 1 + 2618010 G s panTro1.chr19 81136293 1 + 82489036 G s mm5.chr11 120216199 1 + 121648857 G s rn3.chr10 109950288 1 + 110733352 G a score=459.0 s hg17.chr17_random 1880726 9 + 2618010 TAGCAGAGA s panTro1.chr19 81136294 9 + 82489036 TAGCAGAGA s rn3.chr10 109950289 6 + 110733352 ---CTATGG a score=15610.0 s hg17.chr17_random 1880735 429 + 2618010 GCTGGCCAGACGAGCCAGACACACACACAACTTGA----------AGCGATCAAGCCCGCTCAGCGGCCTTGATCCTCCACGTCTCAGGCTCAGACGTGGAGGCCTCAG--CCCCAGCACCGGGAGCACTGTGGCC--AGAGCCNCCTCCCC------ACGTNGGGCTGGTGGGGCCGTCAGCATCTCTGATGTCCAGCTGCCTCTCACTGCAGCAGAGGGCCTG------------CAGC-CCCTCAGCTAACTGACCCTGCTCTCCCTGGTGCAgggctgggcacacggcttctgctgagccttgatttcctttctgtaaaacggggatgaGCTTCCTAAAGGTGATCCCAGCTNCCCCGGCACCTACCCA------------GGTCCAGCTTCCTGGTTCCCTAGAGCATGAGCCACATCAGTACCCTGGAGA---TGGAACCAAACTCCAGCTCCCCTGGTGGGCAGAGGGGG s panTro1.chr19 81136303 426 + 82489036 GCTGGCCAGACGAGCCAGACACACACACGACTTGA----------AGCGATCAAGCCCGCTCAGTGGCCTTGATCCTCCACGTCTCAGGCTCAGACGTGGAGGCCTCAG--CCCCAGCACTGGGAGCACCGTGGCC--AGAGCC-CCTCCCC------ACGT-GGGCTGGTGGGGCCGTCAGTATCTCTGATGTCCGGCTGCCTCTCACTGCAGCAGAGGGCCTG------------CAGC-CCCTCAGGAAACTGACCCTGCTCTCCCTGGTGCAgggctgggcacacggcttctgctgagccttgatttcctttctgtaaaacggggatgaGCTTCCTAAAGGTGATCCCAGCT-CCCCGGCACCTACCCA------------GGTCCAGCTTCCTGGTTCCCTAGAGCATGAGCCACATCAGTACCCTGGAGA---TGGAACCAAACTCCAGCTCCCCTGGTGGGCAGAGAGGG s rn3.chr10 109950295 298 + 110733352 GGTGTCAGTGTCACTCAGAGAC-TGCACAACTTAGCTACGTTTTCAGCCACATCGCTAACCCTCCTGTCTTCAGTCTGCAGATCCCATACAAAGTAG----------AG--CCCCAGCT--------------------------CCGCCTC------AGA--GGATTAATG-----------AACTCTATTATGCG--TGCTTCT---------ACAAAGCCTA-------AGATTCAGC-CTCCTAACTAACTGCCCATG-------------------------------------GGAACTTAAT-------------------GGTGAG------AAAA------CCATCTATCCAGAAACTCAGCAACATTTGACAAATGACTTAGTTTCCTGATCCCAAAGG-----------ATCA-----CTGGAGAATCGAGAACCAGAC------------------CAGGAGGAG s canFam1.chr18 30342153 354 + 66173745 GCCGG------GGGCCAG---------CAACCTGC------------------CGTCCACT-------------------------AGGAACAGCCG---AGTCCCCAGCACCCCTGGGCCGGGACCCCTGCCGCCGGGGAGCC-CTTCCCCTGCGGTAGGC-AGCCTGGTGG---CGCCAGCAGCAGTGCCCTGGGGCCGCCTTTCCAGAGGACAGAACACCCGTCAGGAAGGGCTCAGCGACCCCAGGACCCTAACTCTG-CCTTCCTGCCGCAGGGCC-GGCGCCCTGTTTCCACTGAGTCTGGTT--CCCACCCGCAAAACAGGGACGTGCGTCTGGGTG----------------AGGAGCCCGGCGG------------AGGCCGGGGCCCAGGGGATGCAGGGCATGCGCAGCCTCCGGGGCCTGGGGC--------CCCAGC-----------------ACAGACGGGA a score=240.0 s hg17.chr17_random 1881164 7 + 2618010 TGGCCCT s panTro1.chr19 81136729 7 + 82489036 TGGCCCT s canFam1.chr18 30342507 4 + 66173745 -GGCT-- a score=-221.0 s hg17.chr17_random 1881164 7 + 2618010 TGGCCCT s canFam1.chr18 30342507 4 + 66173745 -GGCT-- a score=40896.0 s hg17.chr17_random 1881171 252 + 2618010 GGAGGAAGCTGCTGGGCCTGACCTGGTGACC-AAGACCCTGGGCTGCCGCCCGTTTATGGCCTCC--CAGCCCAGGGGAATCCACGGCTCTGGAAAAATGGAG--TCTATTTTGAGGCTCAGACGCTCACACTGNGCAGGCTGGACAGTGTCCCCACTCCAGCTGAGGA---CACACANANCCCCAAGGNTGGGG-----AAGCTGACAGGGNCTGGTCTCCAGCCT-GCCCTGCTCCAGANGGGGGCAACTCCAGGTTCTGGGGG s panTro1.chr19 81136736 246 + 82489036 GGAGGAAGCTGCTGGGCCTGACCTGGTGACC-AAGACACTGGGCTGCCGCCCGTTTATGGCCTCT--CAGCCTAGGGGAATCCACGGCTCTGGAAAAACGGAG--TCTATTTTGAGGCTCAGACGCTCACATTG-GCAGGCTGGACAGTGTCCCCACTCCAGCTGAGGA---CACAC--AACCCCAAGG-TGGGG-----AAGCCGACAGGG-CTGGTCTCCAGCCT-GCCCTGCTCCAGA-GGGGGCAACTCCAGGTTCTGGGGG s mm5.chr11 120216531 210 + 121648857 GGAAGAAGGGAGCAGAGCTGACCTAGTGACC-AGAACCCTGGGGTACAACCTATTTATAG---------GCCAGGGGTCTTTTACTGCCCTAAGTGCCTGGAGTATCTAATGTTAGGGTCAGAATCTCATAAT-----------------TAACCATCTAAGATGAGAA----------AACC-----------------AGTCATACAAGA-TTGGTCCTATGCCTGGCCTTGGTCCAGA-TGGGACAACCCCAGATGCTGAAGA s rn3.chr10 109950593 204 + 110733352 ----GAAGGAAGTAGACCTGATCCAGTGACC-AGAACTCTGGGGTGCAACCTATTTACA----------GGCTAGAGTCTTTTAC----------------AGTACCTAAGTTTAGGGTCAGAATCTCATAAT-----------------TAACC-----AGCTGAGGA---CACAC--AGGC--TAGGATGAGAAAACCAGTCATACAAGG-TCGGTCCTCAGTCTGGCCTTGGTCCAGA-TGGGGCAACCCCACATGCTGAAGA s canFam1.chr18 30342511 217 + 66173745 GGGGGAA-------GGCCTGACCCAGGGACAGAGAGCCCGGGGTTGCTGCCCGTTCACAGCCTCCCTCAGCTCAGG---TTTTAGCCCCCCGGGGTGGGGGGG----TATCTTCAGGCTCAG--TGTCACCATA-GCCAGCTGGACG---TGCCCCCTCTGGCTGAGAATAGCACAC--GGCC---------AGG-----GAGC------GG-CCTGTCCCGGGCCG-GCCC----CAGGA-CAGGTTGCCCCTAGGTACTGGGGG a score=0.0 s hg17.chr17_random 1881423 56 + 2618010 AGGGGAGTCCCAGGATTCCCAGGAGGGGGCTTTGAGCACAAGCAACTCCCCTGCCC a score=6321.0 s hg17.chr17_random 1881423 23 + 2618010 -AGGGGAGTCCCAGG-ATTCCCAGG s panTro1.chr19 81136982 23 + 82489036 -AGGGGAGTCCCAGG-ATTCCCAGG s mm5.chr11 120216741 25 + 121648857 CAAAAGAGACCCAGACAGTCCCAAG s rn3.chr10 109950797 24 + 110733352 CAAAGGAGACCCGAC-AGTTCCAAG a score=3192.0 s hg17.chr17_random 1881446 33 + 2618010 AGGGGGCTTTGAGCACAAGCAACTCCCCTGCCC s panTro1.chr19 81137005 33 + 82489036 AGGGGGCTTTGAGCACAAGCAACTCCCCTGCCC a score=19502.0 s hg17.chr17_random 1881479 181 + 2618010 ACCCAGAGGCCCAAGGCTGCAGATACTCCAGGGCACACGGCTGCAGCCCTCACAGAGGGCCAGGAGCACTGAGGCTTCGAG------TCCTCNTCTGGCTCATTCCGCC-TCATGTCAATGGTCCAGCCCTCAAACAC---CACGTGATAAGAATCCCACGGCTCAAGGGCAAAACCNAG---CAAAGAGCAGA s panTro1.chr19 81137038 179 + 82489036 ACCCAGAGGCCCAAGGCTGCAGATACTCCAGGGCACACGGCTGCAGCCCTCACAGAGGGCCAGGAGCACTGAGGCTTCGAG------TCCTC-TCTGGCTCGTTCCGCC-TCATGTCAATGGTCCAGCCTTCAAACAC---CACGTGATAAGAATCCCACGGCTCAAGGGCAAAATC-AG---CAAAGAGCAGA s canFam1.chr18 30342728 179 + 66173745 GCCCTGGGGCCC-------CACACAGCCCACAGCATGTAGCTGCAGACCTTCCCAGAGGCCCGGAAAGATGGGGCGCTGGGTGCACTTGCTC-CCTACTTTGCTCGGTCATCTCATAAATGATCCAGCGTTTGAACACCTGCACGGGTAAA------CACAAGCCAAGTTCCAAACA-AGGGCGACTGAGCATA a score=41751.0 s hg17.chr17_random 1881660 468 + 2618010 AAACCAGCTCCC-----AGCCCTGGAACTCTGTGCCCCATCCCAGGCCAGGAGTGAGGTCCAAAAAGGGCCAGGGGCTCCCCACCCACGGCAGCACCCAGTTTGCTCACAAAGTCACCTCTCCTTTCTTGGACTCTGGGGTCTCTCTGCCC--AGTCNCTCCTGCCAGGGACTCCAGCCCA-CGAACACCAGNAGCACGGAGNGGAAAGGCCTGTTTGGGTTGAGGGTCCCACAGGGACATGCTGCCTGCTGGGAAGCTCCCGTTACAGAGAAAGGCAGAGCTCAGGTAACAG-GTAGACTGGCCAGCCC-------------------------------CCTGCCTCGCCCCCTGCTGGCTCTCACCA--CT--------------------------------GACCGACTGCTGCT--TTAGGGGTACCTGCCTCCCAGNCCTGCCCTCTCCCGT-----GGCTCTTCTCCCCATGCATC-----CTCTG----------CCTCCAGTGGCCACTTGGCCTTTATGCAG---CCACACCTTTGGCCTGGGA-----TCCCCCTGCTGG s panTro1.chr19 81137217 464 + 82489036 AAACCAGCTCCC-----AGCCCTGGAACTCTGTGCCCCATCCCAGGCCAGGAGTGGGGTCCAAAAAGGGCCAGGGGCTCCCCACCCACGGCAGCACCCAGTTTGCTCACAAAGTCACCTCTCCTTTCTTGGACTCTGGGATCTCTCTGCCC--AGTC-CTCCTGCCAGGGACTCCAGCCCA-CGAACACCAG-AGCATGGAG-GGAAAGGCCTGTTTGGGTTGAGGGTCCCACAGGGACATGCTGCCTGCTGGGAAGCTCCCGTTACAGAGAAAGGCAGAGCTCAGGTAACAG-GTAGACTGGCCAGCCC-------------------------------CCTGCCTCGCCCCCTGCTGGCTCTCACCA--CT--------------------------------GACCGACTGCTGCT--TTAGGAGTACCTGCCTCCCAG-CCTGCCCTCTCCCGT-----GGCTCTTCTCCCCATGCATC-----CTCTG----------CCTCCAGTGGCCACTTGGCCTTTATGCAG---CCACACCTTTGGCCTGGGG-----TCCCCCTGCTGG s mm5.chr11 120216855 424 + 121648857 AAGCCAGCTCCTGTAAGAGCTCTAGAACCCTGTGCCCCTCCCCAAACC-----------------------------------------------------TGGCTCCTAAGCTTCACTCTCTCTT---------------------------AGCT-TTC---CCAAAGCTGTCAGCTCA--GGACGTCAA-AGCACAA---GGAAAGCCCTCTGAGGTGTGATAATGGTAGTGACACAAAATG------GGGACGCTCCAGTTACAGGTCAGGGCAGA------GTGACAGTGCTCACGGGCTAGTTC-------------------------------CTACCTTAGCTTCCAG--GGCCCCCGCTG--CTTTAGAACCTCGCAGATACCCTTTTCTGTCCTAGATTCATAGATGCTTGTTTGGTACTCCTGCCCCCTACACCTCCCTTCTCTGGT-----GCGTCTCCTACCCAAGCAGCTGAGACTATGGTGGCCATATCCTCCAATGGTCTCCTGGCTTGCACATATATCCCATGCCCTCTGCCTGGG------TGCCTTTGCTGG s canFam1.chr18 30342907 416 + 66173745 CGGCCAGCTTCC-----------------------------------------------------AGGACACAGGGGACCCCGAACCCTGCCCTGCCC------CTCGCAAAGTGACTTCT---TTCCCGGACTCTGGGGTCTCGCTGCCCATGGTC-CTCTTTCCCAGG-CACCAGCCCCCCGAACACCAG-AGCAGA----GGAAAGGCCCACTCTGGCCGAGGA---CACCCTGAGATACTC------GGGCTGTCCTCA--GCGGCACAAGGCGTG----AAGCTCCAG-GAGGACGGGCCAGCCCCTGCCTGCCCTCAGCCAGGCCCTCGTCATCTCCTGCCCCTCTCCCAGCTTGTCCCCCTCAACCT--------------------------------GGGAGACCCCGGCC--GCAGG-GCACCTGCCCTTCGTGCCTCCCCTGCCCCACTTCAGGCCTCTCCCCGCAGGGCAGC-----CTGCC----------CCCCCCACTGCC--------------CAG---TCACAGCC----CCTGGGGACCACTGGCCTTCATGG a score=15550.0 s hg17.chr17_random 1882128 148 + 2618010 GTTCGGTTGTCACTCCTGCCCCAGATCCCACTGATTGCCC---CACATCCTCCCAAGCAACTACCCTTCCGGGGCTCCCTTTGCCTTGTGTGcacacacacacacacacacacacCTGCCCACACATACCTACCTGCACACACCTTAGCTG s panTro1.chr19 81137681 148 + 82489036 GTTCGGTTGTCACTCCTGCCCCAGATCCCACTGATTGCCC---CACATCCTCCCAAGCAACTACCCTTCCGGGGCTCCCTTTGCCTTGTGTGcacgcacacacacacacacacacCTGCCCACACATACCTATCTGCACACACCTTAGCTG s canFam1.chr18 30343323 123 + 66173745 GCCCGGG----GCCCTCATCTCAGGGTCCCCTACTCACCCTCTCAGGCTAACCCAGGTGCTTACCCTCTC--GGCTCCCGCCACCCTG--------------------CACACACCTG-CCACA-GTGGGGGTCTCTGGACACCTCACCTG a score=0.0 s hg17.chr17_random 1882276 38 + 2618010 AATACATCTGCCANCACACATGCATACAACCGCCCGCA a score=555.0 s hg17.chr17_random 1882276 6 + 2618010 AATACA s panTro1.chr19 81137829 6 + 82489036 AATACA a score=3007.0 s hg17.chr17_random 1882282 32 + 2618010 TCTGC-CANCACACATGCAT----ACAACCGCCCGCA s panTro1.chr19 81137835 35 + 82489036 TCTGC-ca-cacacatgcatacacacaaccgcccgca s mm5.chr1 135311193 32 - 195203927 TCTGTACA-CACACGTGTGT----ACACCTGTGTATA a score=4757.0 s hg17.chr17_random 1882314 20 + 2618010 CACACCTGTCTGTACACACC s panTro1.chr19 81137870 20 + 82489036 cacacctctctgtacacacc s mm5.chr1 135311225 20 - 195203927 CACAGCTGTGTATACACCCA s canFam1.chr18 30343446 20 + 66173745 CTCCTCTGTCTCTGCAGACC a score=5995.0 s hg17.chr17_random 1882334 30 + 2618010 TGCCCACACACATGCGGCACACACCCATAT s panTro1.chr19 81137890 30 + 82489036 tgcccacacacatgcggcacacacccatat s mm5.chr1 135311245 30 - 195203927 TACTCACATACATATTTCACACACCCACGT a score=33481.0 s hg17.chr17_random 1882364 482 + 2618010 GAACACAcctggtgtggcagcatgcacttgtagtcccagctactcagaggctggggtgggaggactgcttgagcccaggaggtcaaggctgcagggagccaagatcgtggcactgcactccagncccaggcaacagagcnaangacnccntgtgtcaaaaaaaaaaaaaaaGCccaggcacggtggctcacgcttgtaatcccaacactttgggaggcagaggcgggtggatcagctgaggtcaggagtttgagagcagcctggcgaancatggtgaaaccctgtctctactaaaaatacaaaanttagttngggcgtggtggcaggcacccgtaatcccagctactcgggaggctgaaacaggagaatcgcttgaacccggganggtggagg-tgcagtgagccaagatcgcgccaacgcactccagcctgggcgacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaggccagg s panTro1.chr19 81137920 469 + 82489036 gaacacacctggtgtggcagcatgcacttgtagtcccagctactcagaggctagggtgggaagactgcttgagcccaggaggtcaaggctgcagtgagccaagatcgtggcactgcactccag-cccaggcaacggagc--aaga--ccctgtgtc--aaaaaaaaaaaaaGCccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggtggctggatca--caaggtcaggagttcaagaccagcctggccaat-atggtgaaaccctgtctctactaaaaatacaaaaattag-ccggatgtggtggcgggcacctgtggtcccagctactcgggaggctgaggcaggagaagtgcttgaacctggga-ggcggaggttgcagtgagccgagatcgtgccactgcactccagcttgggcgacagagcaagactccgtcttaacaacaacaacaaaaaaa--GCCAGG a score=4161.0 s hg17.chr17_random 1882861 90 + 2618010 gncctgtaatcccagcactttgggaggccgaggcgggtggatca--------caaggtcagngagttcaagaccagcctggccaatatggtgaaaccc s panTro1.chr19 81138413 90 + 82489036 GAcctgtaatcccaacactttgggaggctaaagagggcagatcacttgagcccaag---ag-----tcaaaaccagcctgggcaacatggcaaaatcc a score=97978.0 s hg17.chr17_random 1883312 1149 + 2618010 tgctgcccaggctggagtgcagtggcgccatcttggctcactgcaagctccgcctcccgggttcacgccattctcccgcctcagcctcccaagtggctgggactacagaagcccgccaccacgcccagctaattttttgtattattagtagagacgggatttcgtcctgttagccaggatggtctcgatctcctgaccttgtgatccacccacctgggcctcccaaagtgctgggattacagtcgntgagccaccacgcccggccggcaaaatcccatttctacaaaaatataaaaactttggcaggagtgatggctgaggtggtaggattgcttgagcttgggaggtggaggctgtggtgagccatgatcataccactgcactccagcctgggtgacagagggagactctgtctctaagtaaataaaTTTAAAACCCCATAAATATATACACCTATTGTGCACCCATACAttttttttttttttttttttttgagatggagtctcgctctgtcgtccagggtggagtgcagtggcgcgatcttggctcactgcaagctccgcnctcccngggttgnacgccattctcctgcctcagcctctcgagtcgctgggactataggcgcccgccaccacgcccagctaattttttctatttttagtggagatggggtttcactgtgttagtcaggatggtctcgatctcctgacctcgtgatccatctgcttcggcctcccaaangntgctgagattacaggtgtgagctaccacacncNCAGCTGCACCCATACAGTTTTTTAAGTCAACAAGGAGTCTCGTTTGCCTCCTCTTGTTAGGAAAAGAAATGTACCCACACCCTCAATACCACAGGCTGTGTCCTCTAAGTCTTCCCAGACACGAAGAGCCCTTCCCACCTCTCCCTACTTCTTCCTCCAGCTTAGGGACCCCCAGGGCCTCACACTGCCCCCCCACCCCCCGACCCTGCACACATAGCCCCAGGCTTTCCTGGATGTGCCAGCAGTTCCAAGAGGCCAGGGGCCTGCTGTCCCCCTGGAAGCACAATAAACGGTTCTGCAGCTCATTCAGCCTCACTGCCTCCTGGGGCCCTGCCAAGGAGCTGGGTGCCCAATTCTGACCCAGAAGGAATTT s panTro1.chr19 81138684 1113 + 82489036 tgctgcccaggctggagtgcagtggcgccatcttggctcagtgcaagctccgcctcccgggttcacgccattctcccacctcagcctcccaagtggctgggactacagaagcccgccaccacgcccagctaattttttgtattattagtagagacgggatttcatcctgttagccaggatggtctcgatctcctgaccttgtgatccacccacctgggcctcccaaagtgctgggattacagtcg-tgagccaccatgcccggccGGCAAAATCCCATTTCTACAAAAATATAAAAACTTTGGCAGGAGTGATggctgaggtggtaggattgcttgagcctgggaggtggaggctgtggtgagccatgatcataccatggcactccagcctgggagacagagggagactctgtctctaagtaaataaaTTTAAAaccccataaatatatacacctattgtgcacccataCAttttttttttttttt-------gagacggagtctcgctctgtcgtccagggtggagtgcagtggcgcgatcttggctcactgcaagctccgc-ctccc-gggttg-acgccattctcctgcctcagcctctcgagtcgctgggactacaggcgcccaccaccacgcccagctaattttttctatttttagtggagatggggtttcactgtgttagtaaggatggtctcgatctcctgacctcgtgatccacctgcctcggcctcccaaag--tgctgggattacaggtgtgagctaccac--gcccagccGCACCCATACAGTGTTTTAAGTCAACAAGGAGTCCCGTTTGCCTCCT---GTTAGGAAAAGAAATGTACCCACACCCTCAACACCACAGGCTGTGTCCTCTAAGTCTTCCCAGACACGAAGAGCC------------------TTCTTCCTCCAGCTCAGGGACCCCCAGGGCCTCACACTGCCCCCCCACCCCCCAACCCTGCACACATAGCCCCAGGCTTTCCTGGATGTGCCAGCAGTTCCAAGAGGCCAGGGGCCTGCTGTCCCCCTGGAAGCACAAGAAACGGTTCTGCAGCTCATTCAGCCTCACTGCCTCCTGGGGCCCTGCCAAGGAGCTGGGTGCCCAATTCTGACCCAGAAGTAATTT a score=89888.0 s hg17.chr17_random 1884461 1028 + 2618010 TCCATTAAAAATCAAGTATCTGTgcacaacctatgacccagccattctgctcctaggtac-------acaca--------------cccaagatgcgtaca-AGGACAGCTGGAGA-ATTTCACTCGTAATTACCCAAAGGGAAGAGCCACCGCAGAAGGGTAGCAATGCACACCTGGCCTATTCCCATAAGGGAATCAGCAGCCAGAGGGGGCACCACAGCCCCCACGCAGAGACGGACA---CCAAGCACAAGAG-CAGGACCTGAGGGGCCACAGACAGGCCCTGGGACACATGNAATGGGAGGAAGCTGCANAGGGCCGAGGCATGGACATAACTGGAGCCGGGGCCAGGACGGTGCCTGTGAGGGCAGGAAGGAGCCATCCACGGAGAGGGCTGGAGGTCAAGCAAGCTCTGAACCAAGAGGTCACCATGGAGCCACAATAAGGCCTCCAACAACCTCAGC-GGGGCGGCCTAGCATAGTGAGGCACACAGCTGAGGGGGGAGGGCAGGAAGTGTGGCTNGGCAGGCAGCTCAGCCCTAGCTCAGGCCTGNTGGGCAGC-AGGCTGGTGTCTGGC-TAAGCAG------AGGGAA-CCCTGAGGCACAACATCCATGCATGGGGTCCCTGAGGTGGTGGATGTGGAGGGACCCAGGANCCATAGTGGGTGAGAGTGAGCAGGGGACAATGGCACAGGCCCAGAGAAGCGCCGGGGGCAGCCGGAAAAGACCCAGCACACGGCA-GACGGCCACCTGAGGTGGCAGCCCCTGAGCCAGCAGGAGACTGACACCTCAGCTGCCCAGGTAAAGGGGAGTGGCGGCCTGACCGAGGCCGACCACAGGTGAAGGGTGGGAGGGAGGGGCTCCATTNCNNNGNNCCAGAGAGACAGCCCCACTTCAGAGGTCTCGAGACCCCATCCAGCCCGGCCCCCT-GCCTTCATCCCACCTGGGCCACCACCAGGGTGACAGCAGTAAGGGAGGGTCAGGCGATGCCTCGGTCCCGTTTTCCTTCCCTCTTTCTGTCAGAATCAAGACCGAGCATGCCGATGTCCCGGCCACGG s panTro1.chr19 81139797 1027 + 82489036 TCCATTAAAAATCAAGTATCTGTgcacaacctatgacccagccattctgctcctaggtac-------acaca--------------cccaagatgtgtacataggacagctggaga-ATTTCACTTGTAATTACCCAAAGGGAAGAGCCACCGCAGAAGGGTAGCAATGCACACCTGGCCTATTCCCATAAGGGAATCAGCAGCCAGAGGCGGCACCACAGCCCCCACGCAGAGACGGACA---CCAAGCACAAGAGGCAGGACCTGAGGGGCCACAGACAGGCCCTGGGACACATGGCATGGGAGGAAGCTGCAGAGGGCCGAGGCATGGACATAACTGGAGCCGGGGCCAGGACGGTGTCTGTGAGGGCAGGAAGGAGCCATCCACGGAGAGGGCTGGAGGTCAAGCGAGCTCTGAACCAAGAGGTCACCATGGAGCCACAATAAGGCCTCCAACAACCTCAGT-GGGGCGGCCTAGCATAGTGAGGCACACAGCTGAGGGGGGAGGGCAGGAAGTGTGGCT-GGCAGGCAGCTCAGCCCTAGCTCAGGCCCGGTGGGCAGC-AGGCTGGTGTCTGGCATAAGCAG------AGGGGATCCCTGAGGCACAACATCCATGCATGGGGTCCCTGAGGTGGTGGATGTGGAGGGACCCAGGA-CCATAATGGGTGAGAGTGAGCAGGGGACAATGGCACAGGCCCAGAGAAGCGCCGGGGGCAGCCGGAAAAGACCCAGCACACGGCA-GACGGCCACCTGAGGTGGCAGCCCCTGAGCCAGCAGGAGACTGACACCTCAGCTGCCCAGGTAAAGGGGAGTGGAGGCCTGACCGAGGCCGACCACAGGTGAAGGGTGGGAGGGAGGGGCTCCATT----CAGCCCAGAGAGACAGCCCCACTTCAGAGGTCTCGAGACCCCACCCAGCCCGGCCCCCTGGCCTTCATCCCACCTGGGCCACCACCAGGGTGAGAGCAGCGAGGGAGGGTCAGGCGATGCCTCGGTCCCGTTTTCCTTCCCTCTTTCTGTCAGAATCAAGACCGAGCATGCCGATGTCCCGGCCACGG s canFam1.chr18 30344308 769 + 66173745 TACATGAATAATCA--------CGCACACCCT---GACAAACCATTCTAGTCCCGGGTACGTGTCTGACACAAGGGCCATGAGGCCACTGGGAGGCACACA-AGAGCGGCCAGAAAGGCGTCACTCATGAGCACCTAAA-GGAAGAGCCACCAGAAAAGGTGGCCTATG----TCGGGCCCACTCTCGCCACTGAAGTTGACACCGCTGGGAACATGA-----ACCACACAAGAGCAGGCAAATCCTAGCACTGAGG-CTGAGCAAAAGG-------AAGTGACCCAAAAGGACAGAGGATGGAAGCCTGGGGCCAGGAGC--AGGC-TGGGAGCAGCCCCAGCAGAGGCCAAGCCACAGAGGCTCAGGTCGGCGGAGACCCATCTAAGGGAACAGCTGGA-GTCAAGTACAACCTGGACC--TAAGCGACCACTGGACCAGCGTGA-----CAAACCTGCTCAGCAGGAATGGTCT----CCGTGGAACAC---------------GGGGAGGAAGTG-----------------------------------GGTGGTCAGCGAGGCTGCCGTGGGGA-GGAGCAGCTCTGAAGGGAG-GCTGGAGGCCGGGC-----TGACCACGGCCACGGAAGAGGCAGGTGTGGAGGGGCCAAGTGACC------------AGCGCACTGGGGCCAGTGGCCAAGGACC-------------------CCTAGCAAGA--CAGGCCACGCCACGAGGACCAC--------GGAGCCTCAAGTCCAGGAGGA---CGAAAGCCCGG-TGCGCAGG----GGGCAGGGGCTGCCGGCCAGACGCC----------------------------------------CAGGCCAGAGA-------------------------------------------------CCCCTCCTCTCATCTG----------------------------------------------------------TCTTCCCTCTTCTGCTCACAAGGACTATGAAGCGCAACTACTTCCCAGCTCTGg a score=76976.0 s hg17.chr17_random 1885489 744 + 2618010 CCCCGTACT------CCTCAGTCGCTACACCACACCCCACTGCCTCTGAGAGTTTTCTTTCATAGttttcatattttaacatctttgaaactgggctgcgcctgacaattgctaacacgtcagaatttaaccaatggtggtttttatttctcaatgt-actgtaaaatatagcgcagctcacaatggctggggtctcacatGGGAGGA---------------------CCCTCGATGACACTCTC--CTGGCCCANGGACCACCCTT-CCAGAGCCCCTCAGGCTACATGGTCTTTAGGTGTTTTCTCCCCTTCCCCTCAAAGTCTTCCACATCCCACGCCACCCCACCCCACCCAGTGCTG--GGACAACCTCCAGTTCCAGACACCCAGCATCAGGACAGGTGGACACAGATGTCTACATGATCTTCCTGAAACCCTATCCCCAAGTCACTTAGCACTAGGGTGTCACCCAGGCCCTCTGCTGCCATCAANGCCCACTGTCCAGTCCCAACTTGTTTTACCAGGTGTCACCTGCT--GCTCCACTCCTGCCCCA---ACAGCCTTTGCCACAGGA------CTACCTGCCACCAGCCACACAGAG---CACAGGCCACCTGCAAGTCTGTGCATTCTGCAGGA--CGTGACTGCCTGCTTCCGTGGC--CGTCCAGCCTACagggcctggccta--------ctg-ggctgcaggt-at---tcccctgctctggggcc-ccgggcaag-------ctcctctgagcctcagcatcctcattcaaagtgATGCNAGCCCACAGG---------TAGGNCTCG s panTro1.chr19 81140824 740 + 82489036 CCCCGTACT------CCTCAGTCGCTACACCACACCCCACTGCCTCTGAGAGTTTTCTTTCATAGttttcatattttaatatctttgaaactgggctgcgcctgacaattgctatcacgtcagaatttaaccaatggtggtttttatttctcaatgt-actgtaaaatatagcgcagctcacgatggctggggtctcacatGGGAGGA---------------------CCCTCGATGACACTCTC--CTGGCCCA-GGACCACCCTT-CCAGAGCCCCTCAGGCTACATGGTCTTTAGGTATTTTCTCCCCTTCCCCTCAAAGTCTTCCACATCCCACGTCACCCCACCCCACCCAGTGCTG--GGACAACCTCCAGTTCCAGACACCCAGCATCAGGACAGGTGGACACAGATGTCTACATGATCTTCCTGAAACCCTATCCCCAAGTCACTTACCACCAGGGTGTCACCCAGGCCCTCTGCTGCCAGCAA-GCCCACTGTCCAGTCCCAGCTTGTTTTATCAGGTGTCACCTGCT--GCTCCACTCCTGCCCCA---ACAGCCTTTGCCACAGGA------CTATCTGCCACCAGCCACACACAG---CGCAGGCGACCTGCAAGTCTGTGCCTTCTGCAGGA--CCTGACTGCCTGCTTCCGTGGC--TGTCCAGCCTACAGGGCCTGGCCTA--------CTG-GACTGCAGGT-AT---TCCTCTGCTCTGGGGCC-CCGGGCAAG-------CTCCTCTGAGCCTCAGCATCCTCATTCAAAGTGATGC-AGCCCACAGG---------TAGG-CTCG s canFam1.chr18 30345268 742 + 66173745 CTCTGGACCTTAAAATCTTACTATATACACTTAGTCCCATCAACTCCAAGATACTTTTTTC-----------ACTTTAATGGTTTTGAAGTATCGCCACACCTGGCAATTGCCAGTATGTTGACGTTT-GCCAGTG-----TCCTACGGGTTCGGGTGACAGTGATGTGAGGGGCAGCTCA--GTTCCTGGTGTCTCAGATCTAATGACACAACAATGGTCTCCTCTGGCCCACGATCCCACCCTTGGCAAGCCCA-GGGCCATCCTTCCCAGAGCC-----GCCAATGTGCTCTCGGGCTACCTCTTCCCATTCGC-----AGCCTCCCCTTGGCCA-GCTA-------CCACCCGGTACGGCAGCACAGTCTCCTGCACCACTCTCCCCCACTCCGG-----------------------------TCCTGACACCCC-TCCCCAAAGAATCCCCCGCCTGCACAC--CCTGGGCCCTGTGCTGTCATGGA-GCCCCCAGCGTGG-CCCAGTCTATTTCTTCAGGTGTC-TCTGCTGGGCTCCAGCCCACCCCCAAGCACAGTCTCCGACACACAGCCCCCTCTGCCTGCTGCCATCACCACAGGGAGCCACATGCTGCCCCCCA--CTGCACACTCTGCGGGGCTCACGGCAGC------CAGTGGCTACGTGCTGGGCACACGGCAAGGTCCAAAACAATTCTGTGGCTGGAGATCATCCGTCCCTTGCTCTGCTGCCTCCAGGGAAGCCCCTTTCCCCTCTGGGCCTCACAGTACTCATCTAAGCCAAAGC-AGTCCCCAAGAATGCGCGCTAGG-CTCT a score=8319.0 s hg17.chr17_random 1886233 43 + 2618010 CCTGCTCCAATAGGGACGGAAGCACAGCCATGGAAAGCCAGCA s panTro1.chr19 81141564 43 + 82489036 CCTGCTCCAATAGGGACGGAAGCACAGCGATGGAAAGCCGGCA s mm5.chr11 120219064 43 + 121648857 CCTGCTTCAATGAAGATTGAAGCATGGCTGTATGAAGCCCATA s canFam1.chr18 30346010 38 + 66173745 CCTGCTTGACAACAGAC---AGGACAATCACAGAAAG--AGCA a score=0.0 s hg17.chr17_random 1886276 63 + 2618010 GCTCAGTGAGGTCTCTGTGGCTCCNTTATCCNATACGATGATGGACAGGACAAGCATGTGCTG a score=6904.0 s hg17.chr17_random 1886276 53 + 2618010 GCTC-AGTGAGGTCTCTGTGGCTCCNTTATCCNATACGATGATGGACAGGACAA s panTro1.chr19 81141607 52 + 82489036 GCTC-AGTGAGGTCTCTGTGGCTCC-TTATCCAATACGATGATGGACAGGACAA s mm5.chr11 120219107 53 + 121648857 CCTCAAACAAAGGACCTCCAGCTCT-TCAGTCAACATGATAATGGACATGACAA a score=842.0 s hg17.chr17_random 1886329 10 + 2618010 GCATGTGCTG s panTro1.chr19 81141659 10 + 82489036 GCATGTGCCG a score=5493.0 s hg17.chr17_random 1886339 35 + 2618010 TATGGTTCAACTGGATGCTGTTAAGAATGAAAGGG s panTro1.chr19 81141669 35 + 82489036 TATGGTTCAACTGGATGCTGTTAAGAATGAAAGCG s canFam1.chr18 30346048 35 + 66173745 CACCGTCTAACTGGGCGCTTCTGGGAGTGGCAGGG a score=53061.0 s hg17.chr17_random 1886374 606 + 2618010 GCTGGggccaggcgtggtggctcacgcctgtaatcccagcacgttgggaggctgaggtgggcagatcacctaaggtcaggagttcgagaccagcctggccagcatggtgaaacccncgtctctactaaaaatacaaaaagtagccaggcgtggtggcagtcgcctgtaatcccagctactcaggaggctgcggcaggagaatcgcttgaaccncgggaggcagaggttgcagtgagccaagatcacgccattgcactccagcttgggggacaagagtgagacttcatctcaaaaaaagaaaaaagaaaGGGGCTAGATGTGGTGgtaatcctagcactttgggaggtcaggagttcaagactggcctgggcaacataga--aagagccccatctcgacNcaggtgcggtgactcacgcctgtaatcctggcactctgggaggctgaggtgggcagatcataggaggtcaggagtttgagaccagcctgggcaacatggcaaaaccccattgctactaaaaaaaaanaaatacaaaaattaggccaggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggtggaaggatcatctga s panTro1.chr19 81141704 598 + 82489036 GCTGAggccaggcgtggtggctcacgcctgtaatcccagcacgttgggaggctgaggtgggcagatcacctaaggtcaggagttcgagaccagcctggccagcatggtgaaaccc-cgtctctactaaaaatacaaaaagtagccaggcgtggtggcagtcgcctgtaatcccagctactcaggaggctgcggcaggagaatcgcttgaacct-gggaggcagaggttgcagtgagccgagatcacgccattgcactccagcttgggggacaagagtgagacttcgtctcaaaaaaagaaaaaagaaaGGGGCTAGATGTGGTGgtaatcctagcactttgggaggtcaggagttcaagactggcctgggcaacatagAGCAA------CATCTCgac-caggtgcggtgactcacgcctgtaatcctggcactctgggaggctgaggtgggcagatcataggaggtcaggagtttgagaccagcctgggcaacatggcgaaaccccattgctactaaaaaaaaa-aaatacaaaaattaggccaggtgcagtggctcatgcctgtaatcccagcactttgggaggccaaagaggaaagatcatctga a score=27820.0 s hg17.chr17_random 1887130 325 + 2618010 gcagaggttacagtgagccgagattgtgccactgcactccagcc--tgggcaacagagcaagactctgtctctcaaaaaaaaaaaaa-----aaattagccaggcatggtggtatgcacctgtaattccagcttctcaggagtctgaggcaggagaatcgctttatacccaggaggcgcaggttgcagtgagcagagaccatgtcactgcactccagcttgggaaacagagacagagcaagactctatctcaaaacaaacaacaaacaaacaaacaaaaaagggccccatctctgctctctgccctcaaaaaaaaaaaaaaaaaaaaagaaC s panTro1.chr19 81142455 325 + 82489036 gcagaggttacagtgagccgagattgtgccactgcactccagcccctggc--acagagcaagactctgtctctcaaaaaaaaaaaaacaaaaaaattagccaggcatggtggtatgcacctgtaattccagcttctcaggagtcggaggcaggagaatcgctttatacccaggaggcgcaggttgcagtgagcagagaccatgtcactgcactccagcttgggaaacagagacagagcaagactctatctcaaaacaaacaacaaacaaacaaacaaaAAAGGGCCCCATCTCTGCTCTCTGCCCTCAAAAAAAAAAAAAAAA-----GAAC a score=5643.0 s hg17.chr17_random 1887455 30 + 2618010 GAAAGGGATGCTGTTGATTATCAAGAATGA s panTro1.chr19 81142780 30 + 82489036 GAAAGGGATGCTGTTGATTATCAAGAATGA s rn3.chr10 109953579 30 + 110733352 GAAAGGGGTGCTGTAGGCCACTGAGTATAA a score=0.0 s hg17.chr17_random 1887485 3 + 2618010 AAC a score=846.0 s hg17.chr17_random 1887485 3 + 2618010 AAC s panTro1.chr19 81142810 3 + 82489036 AAC s mm5.chr11 120219198 3 + 121648857 AAC a score=1653.0 s hg17.chr17_random 1887488 10 + 2618010 AACT--CTTCTG s panTro1.chr19 81142813 10 + 82489036 AACT--CTTCTG s mm5.chr11 120219201 12 + 121648857 AACTAACCACTG s canFam1.chr18 30346111 10 + 66173745 AACA--GTGCTG a score=302.0 s hg17.chr17_random 1887488 10 + 2618010 AACTCTTCTG s canFam1.chr18 30346111 10 + 66173745 AACAGTGCTG a score=60159.0 s hg17.chr17_random 1887498 404 + 2618010 GGTAAACTG-GAATGTAGAGTCAGCCCACTCTTAGG--AAGGTGGAGGCCCAGAAAAGCACTGGGGACTGAAAGAAGAGACTGCCACCAGCCA-CAGCAAACACTTGTC--GGGCTAAGGGCAGGGCAGCCACCACGCTGGGCCCTTACACACATTGCCCACATCCC---CACAGCTGGACCAGAAAGATACCCTGAGAACTTCCAGTTC-AGCGCTGAAGGAGC-----CTGCCACCAAGCAGCGG---------------TGCCCC------TCCCAGGGCCTCCGGGGCCACAGCATTTGGGGCTCAGCCCGAATGCTGCAGCTGGCCTGAGCCTCCCAAAGTCTGCCTCCACTCNTGCCTGCACCCTANCAGCAGGTTTCTGGACTCCCTGAAAGACCCACTCCCTACTGATACCCATGTGGCTTTGCTCAGAGAC s panTro1.chr19 81142823 402 + 82489036 GGTAAACTG-GAATGTAGAGTCAGCCCACTCTTAGG--GATGTGGAGGCCCAGAAAAGCACTGGGGACTGAAAGAAGAGACTGCCACCAGCCA-CAGCAAACACTTGTC--GGGCTAAGGGCAGGGCAGCCACCACGCTGGGCCCTTACACACACTGCCCACATCCC---CACAGCTGGACCAGAAAGATACCCTGAGAACTTCCAGTTC-AGCGCTGAAGGAGC-----CTGCCACCAAGCAGCGG---------------TGCCCC------TCCCAGGGTCTCCGGGGCCACAGCAGTTGGGGCTCAGCCCGAATGCTGCAGCTGGCCTGAGCCTCCCAAAGTCTGCCTCCACTC-TGCCTGCACCCTA-CAGCAGGTTTCTGGACTCCCTGAAAGACCCACTCCCTACTGATACCCATGTGGCTTTGCTCAGAGAC s mm5.chr11 120219213 407 + 121648857 AGTATATGGTAAATGTGGAATCAGTTAATACTTAAAACGAGGTGGAGACCCAGAAATGTCCAAGGACC--------AAGAATCACAAAGGCCA-CAGCAGAGCCTTGGC--AAGGGAGGACAGAGGGAATCCCTGTGCTGGGAACTT-TATACACTGTTCATGGTCCTATCACAGCAGG-CCAGGAAGAAGGCAT-----CTCACAGTCCTATTGCAGAGGATGTCACAGCTGTCACCTGAGAGCTGATCTGAATGACTCCCAGCCCCGACACACTCCAGGGCCTTCAAGGCTGCAGAAACTG-------GCTAGGGTGCTG--GGTG--CTCATTATCTCTGAGTTTGCCTCAGCTCCTGTCTGCATCCTA-CATCAGGTTCCTAAACTCTCTGAAATG-CTGCTTCCCAGTGACACCCGTGTGGGTCTGCTCACAG-- s rn3.chr10 109953609 377 + 110733352 GGTAGA----AAATCTGCAACCAGCTAATATTTAAAA-CAAGTGAGGACCTAGAAATGTCCAGGAATC--------AAGAATCACAAATGCCA-CAGCAGAGCCTTGCCAAGGGGGAACTACAGGGCAGC--CTGGGCTGGGAACTT-TACACACTGTTCATGGTCCTATCACAGCTGG-CCAGGAAGATGGCAT-----CTCACAGTCCTATTTCAGAGGATGAAGCAGTTGTCACCTAAGAGGTGACCTCAATGACTTCCAGTTCCGACCCCACCCAGGGGCTTGGAGGCTGCAGAAGCTA-------GCTGGGGTGCTA--GATG--CTCA---TCTCTGAGCCTGCCTCAGTTCCTGTC-------------------------CTCTCTGAAATG-CTGCTTCCCAGGGACACCCGTGTGGGTCTGCTTACAGCC s canFam1.chr18 30346121 271 + 66173745 GGTGCACC--AGATGCGGCGCCAGCCCCTTCACAAG--GACCTGGAGGCCCACGGAAGCCCAGGACAT---GTGAAAAGGCTGC--AGTGCCACCAGCTGCCACCCAGC--AAAGCAGGGTCTGAGC-------------------------------------------CCCAAGTGG------------------------------C----------------------------------------------------TGTTAG------CCTCTGAGCCTCCAGGGCCACAGCAGTCAGGGCCAGGCTCAGACACCTCAGCCGACCTGAGCACCCAAGAGCCTGCCAATGGCCTCTCCCACA---------------------CCCGCTGGCAGG------CCCCCTTGGCATCAACGTGGCCCTGCTCAGAGAC a score=0.0 s hg17.chr17_random 1887902 19 + 2618010 TGGCCCNTCCCTCCAGATA a score=25.0 s hg17.chr17_random 1887902 10 + 2618010 TGGCCCNTCC s panTro1.chr19 81143225 9 + 82489036 TGGCCC-TCC s mm5.chr11 120219620 3 + 121648857 -------CCC s rn3.chr10 109953986 10 + 110733352 TCTCTATTCC a score=-536.0 s hg17.chr17_random 1887912 9 + 2618010 CTCCAGA--TA s panTro1.chr19 81143234 9 + 82489036 CTCCAGA--TA s mm5.chr11 120219623 6 + 121648857 CTCTA-----C s rn3.chr10 109954122 11 + 110733352 CCCCAGAGTTC a score=17218.0 s hg17.chr17_random 1887921 87 + 2618010 GGGAGGGGAGTCGCATTGGGTAGA-ACTATGTAGAACCTTCCTCCTCCAGGGGACCCAAGGGCTTTA-GAGACTTCCAGGTGGGG--AGGG s panTro1.chr19 81143243 87 + 82489036 GGGAGGGGAGTCGCATTGGGTAGA-ACTATGTAGAACCTTCCTCCTACAGGGGACCCAAGGGCTTTA-GAGACTTCCTGGTGGGG--AGGG s mm5.chr11 120219629 82 + 121648857 TGGGAGAGATCCGGAATGGGTTTATTCTCTATAGAACTCTCCACTTCTATAGGACCC-AGGGCTTTG-GA-------AGGCAGGGTAGGGG s rn3.chr10 109954133 79 + 110733352 TTGAATGGGTTTATTCTGTATAGA-ACTATA--------TCCACTTCTATGGGACTCAAGGCCTTCA-GAGATTTCTTGGAAGGC--AAGG s canFam1.chr18 30346392 85 + 66173745 GAGGAGGGAGTCTCCCCCAATGGA-TAAGTTTTGTACCTTGCTCTTGCAGGGGAACCAAGGACTTTCTGAGACCTCCTGGGCGGG--A--- a score=12177.0 s hg17.chr17_random 1888008 86 + 2618010 GACAGAAC---------------CCCAGTCTCTGGCCTCCCAGTCCCAAATT--CTTTCCCC-CACACAGCC-ACATGCCTAAGAAC---AGGCCATGAGGTAACACT------- s panTro1.chr19 81143330 86 + 82489036 GACAGAAC---------------CCCAGTCTCTGGCCTCCCAGTCTCAAATT--CTTTCCCC-CACACAGCC-ACATGCCTAAGAAC---AGGCCATGAAGTAACACT------- s mm5.chr11 120219711 74 + 121648857 GACAGA--------------------------------TCCAGGACCACATCAACTCTTCTA-AATACATCCAATATGCC-AGGCACATGATGCTAAATGGTCACACT------- s canFam1.chr18 30346477 109 + 66173745 GACAGGTCATGGGGAACCCGATGCCCAGCCTCCAGCCCCGCAGTCTCAAATT--CTTTCCTCGCACACAGCC-ATATGCCTAAGGAC---AGGAGAGGAGATGACATGCTGTTGT a score=36343.0 s hg17.chr17_random 1888094 90 + 2618010 CCAGCAACGTGACAATAGTGA-GGTTCCAGAGTTAGAATCAGTGACGCCATCGCTAGTCACCATG--CTCCTCCGGAGTTTCTGAGATTCAAA s panTro1.chr19 81143416 90 + 82489036 CCAGCAACGTGACAATAGTGA-GGTTCCAGAGTTAGAATCAGTGACGCCATCGCTAGTCACCATG--CTCCTCCGGAGTTTCTGAGATTCAAA s mm5.chr11 120219792 90 + 121648857 CCACCACAGTGACAATGCGAG-TGGTCCCTCACTACAATCAATGGTGCAATGGCTGGTCACTCTG--TTCTTCTGAAACGTCTACTATCCAAA s rn3.chr10 109954426 91 + 110733352 CCACCAAAGCGACAACGAAAGTGGCCCCTGCACCACAGTCAATGGTGCAATGGCTGGTCACTCTG--TTCCTCCGGAACTTCTACTATCCAAA s canFam1.chr18 30346586 90 + 66173745 TCGGGAAAGTGACAATG--AG-TGTTCTAGAGCTAGAATCAGTGATGCAAACGGTGGTTGTTCTGTCTTCCTTTGGAATTTCTGATACTTGAA a score=4905.0 s hg17.chr17_random 1888184 23 + 2618010 GTTTCTAAGACTCCACTTTCTCT s panTro1.chr19 81143506 23 + 82489036 GTTTCTAAGACTCCACTTTCTCT s rn3.chr10 109954517 21 + 110733352 --TTTTGCTTCCTTCCTTCCTCT s canFam1.chr18 30346676 23 + 66173745 TTTTCTTGGATTCCACTTTCCCA a score=412.0 s hg17.chr17_random 1888207 18 + 2618010 TCGTGTTNTGTGTCTTTT--------------- s panTro1.chr19 81143529 18 + 82489036 TCGTGTTCTGTGTCTTTT--------------- s rn3.chr10 109954660 17 + 110733352 TCATG-CCTGTATCCTTT--------------- s canFam1.chr18 30346699 33 + 66173745 TGACATTCCTTGTCTCTGCGGTACTGGACACTT a score=6269.0 s hg17.chr17_random 1888225 31 + 2618010 TCAGCCAACGAGGCT---AGAAAATGATCTATTG s panTro1.chr19 81143547 31 + 82489036 TCAGCCAACGAGGCT---AGAAAATGATCTACTG s mm5.chr11 120220023 30 + 121648857 TCAAATTGTGAGGCT----TATAGCGACTGACCA s rn3.chr10 109954677 34 + 110733352 ACAAATTGTGAGGCTTTTAGTTAATGATTGACCA s canFam1.chr18 30346732 34 + 66173745 TCAGCCGTTAAGCCTTCTAGAAAAAGATCTGCAg a score=3469.0 s hg17.chr17_random 1888256 13 + 2618010 CCCAAGCAGGCGC s panTro1.chr19 81143578 13 + 82489036 CCCAAGCAGGCGC s mm5.chr11 120220053 13 + 121648857 GCCAAGCAGGAGC s rn3.chr10 109954711 13 + 110733352 GCCAGGCAGGAGC s canFam1.chr18 30346947 11 + 66173745 -ACAAAAAACTG- a score=47280.0 s hg17.chr17_random 1888269 566 + 2618010 ACGAGGATACGGNTGTCACAGC--TGCCACACT-GGCACCTCGTGG-----TCCCTTGAAGACCGCCCAGGGAAAGCCTCTAAGCGCTGCACCACCTCCTCACCCTCTC-CCCTGGGTGGTGGCAG--CAAC-----------------AGCCTGAGCGTGTGCGCCCTCCTCCCCATCCTGATCCCACTCAAACCAC--AACCTCCCNTGACTCGCCCCAAATCCAGCCCT---------------------------GTTGGCTCTTCCTTCACGTC--CCACTTCCCACCCTCTCTACACGTTCTCGCCACATCCCACCCAAAGTCCACTCACTGGTCCCTGTTTACACCTCAGGGCCTTTGGTCAAGCTGTCTTCTCTGCCCAAAACTATCCTACTCATCCTTGGGGATCCAGCTGAAAGACCANCTT-CCNGCGACNGCTACCCANG---GGCAGGAGGGAGAGAAG------------------------CACAGCCCGTGCCC-CGTATGGC-------TCCCGCCCCCGCGGT----CACAACCACCGCCCAGTGA-----GTGCCTANAAGGCAGGCGGAGGCCCCGTTCTCCCCG--TTAGGCCCAGCATCACC-----GC-CCGGGGAGACGGGAAAGAGGGCAAGGCCNAAAAATGGACAGAAAAA s panTro1.chr19 81143591 569 + 82489036 ACGAGGATACGGCTGTCACAGC--TGCCACACT-GGCACCTCGTGG-----TCCCTTGAAGACCGCCCAGGGAAAGCCTCTAAGCGCTGCACCACCTCCTCACCCTCTC-CCCTGGGTGGTGGCAG--CAAC-----------------AGCCTGAGCGTGTGCGCCCTCCTCCCCATCCTGATCCCACTCAAACCAC--AACCTCCCCTGACTCGCCCCAAATCCAGCCCTGTCC-----TTTAGGAAGA--------GTTGGCTCTTCCTTCACGTC--CCACTTCC-----------CACGTTCTCGCCACATCCCACCCAAAGTGCACTCACTGGTCCCTGTTTACACCTCAGGGCCTTTGGTCAAGCTGTCTTCTCTGCCCAAAACTATCCTACTCATCCTTGGGGATCCAGCTGAAAGACCACCTT-CCTGCGACGGCTACCCAGG---GGCAGGAGGGAGAGAAG------------------------CACAGCCCGTGCCC-CGTATGGC-------TCCCGCCCCCGCGGT----CACAACCACCGCCCAGTGA-----GTGCCTAGAAGGCAGGCGGAGGCCCCGTTCTCCCCG--TTAGGCCCAGCATCACC-----GC-CCGGGGAGACGGGAAAGAGGGCAAGGCCGAAAAATGGACAGAAGAA s mm5.chr11 120220066 457 + 121648857 ----------------CACAG---TGCTG---T-GACAGCTCGGGC-----CTGCTTCCAGAT----------------------------------------------------GACAGTGGCAGGTCATC-----------------AGACCTAGAACGTGTATCCTATTCTT--TCCCGGGACTA-GCAAACTATTAGATATTCCCTAAATGGACCCAAACCCAGACTCCTTC-----TCCTGAAGGA--------CCTGGCTCTCGTTGCACTCCTGTCACATCG----CTGTCTAAACGTCCTGGACACTCCCCA---GAAATCCACCAGCTGATCTCAACTCA---CTGGGGGCCTTTGCTTGAGCC-TGCCCTGTGTTTGAAA----------CAT-----GGCGTCCAGAGGGAAGACCATTTTATCTCGGACGACCACCC--------CAGGA---------------------------------------TCTGGGCTG-CTTTTGTCAACAGGGTACGATACTTCCGGC----CACCAGCA-TGTCCAGC-------TTGCCCA-----CAGAC--AGGCCCCGGGCTT----------GCGCAGAGCCACT-----GCATCAGGACAACTGGGATGTGGGCAGGGCAGGTAGCCGGCAAGGACAC s canFam1.chr18 30346958 637 + 66173745 CTATCGACACGGGTGCCAGAGTAGCGCTGCGCTAGACGCCCCAAGGGGCATTCCCCTGAAGAC--CTCGGATCCAAACTCGAAG--------CATGCCCTCGCCCCCCCTTCCTGGCTGATGGCAG--CAGCTTGCATCCCAAGCAGTAGCCCTGAGCCTGGGCACCCTTACCCC-----CGGACCCA--GAAACCTC--AGCATCCCCTAAGCTCACCCCCGTCAAGCCTCCGTCCTGGGTCCTGGAGGAGGCTCCTGCCCGGCTCCTCCT-CAC-TC--CCACTGctcgctctctct-ctctttctctctctctcAACCCCAGAACTCACTCGCTGCTCCCCGCTGACGTCTC-GGGCCTTTGCTCAAGGTGTCCCCGCCGCCCAACAGGATCTTGCTCATCCTT-GGGATTCTGCTAAAAGACCGCCTT-TCCTTGGAAGCCTCCCAGGGCTGGCCGGGGGGCCTGGCGTCTGCACCTCCACACCCTCGGTGTCACGACTCGGACCCACACGGGGC-------GTCCACCCCGTCCGTGCAGCAcccccgcagccccggggcgggcgggcccTGCAGACAG-CGCGCACCCTGGCCACCCCGCACCTAGCCGCGCACCACCTGCGGGC----GGAGGCCGGCACCGCGGGGAAGGCTGGAAAACGGAAGGAAGGA a score=28848.0 s hg17.chr17_random 1888835 274 + 2618010 GAATGCGGAC-----GGCCGGGCCCGCGGCGCTCCGAGAATCGGAGGCATCCTCAGGNACGGTCCC-------------------TCCAGGAGACCGGGAAAGCGG-----------------------------GGCTCTGTCAGCCCCNA---AGCCCCGACG-----GCGGCAGAAGGCTGGCCCGCTGCGAGCGTCCGGCGGCGCTGGGTCCCCGGCACCTGC----CCCTGCCTGGGCGGGAAAGGCGCTCAGTCCGAGCCGCGCCCTCCCCA-CGCGCGCTCCCAggcgcc-ccgcgg-----gccgcgcccTCCTGCAGGTGCCGGGCGGGGA---ACGCGG s panTro1.chr19 81144160 274 + 82489036 GAATGCGGAC-----GGCCGGGCCCGCGGCGCTCCGAGAATCGGAGGCATCCTCAGGCACGGTCCC-------------------TCCAGGAGACCGGGAAAGCGG-----------------------------GGCTCTGTCAGCCCCAA---AGCCCCGACG-----GCGGCAGAAGGCTGGCCCGCTGCGAGCGTCCGGCGGCGCTGGGTCCCCGGCACCTGC----CCCGGCCTGGGCGGGAAAGGCGCTCAGTCCGAGCCGCGCCCTCCCCA-CGCGCGCTCCCAggcgcc-ccgcgg-----gccgcgcccTCCTGCAGGTGCCGGGCAGGGA---ACGCGG s mm5.chr11 120220523 332 + 121648857 CGGCGCGGTTTGGGGAGGCTGGCCTGCGCAGCT-CAAAAGCAGGGAGCGCCCTCAGAGGCTGCCCCGGGACCGCGGGCGTCGGTTCCCGGGGAGGTGGGGGGGCGGCCGCCACGTCCGCACTCCGTGGAGACACCGGCCTTGTCTCTCCCCGCTCAGGCCAGGCGACCCAGCGACACCAGGGCGGGGCGGGGCGG------GGCGGCCAAGGTCCCACGGAGCCTGCAGCGCCCCGCCCCGCCGTGCC----------TCCGCGCCGCGCCTTCCTCACCTCGCCCTCCTCGCCGCCGCCGCTGCCGCCGCCGCCGCCGCTTCCAGTGGGCCGGCCGGAAGTGACGCGG a score=9383.0 s hg17.chr17_random 1889109 113 + 2618010 GCCCCTCCCTCGGACCCCGGCTGCCCGGCCACTcccccgcgcncggncccgcccggccctgcanggnacccgcggccgcgcggcgACACCANGGCGGGGNCCAGNCGNGNCCG s panTro1.chr19 81144434 113 + 82489036 GCCCCTCCCTCGGACCCCGGCTGCCCGGCCACTcccccgcgcccggccccgcccggccctgcagggcacccgcggccgcgcggcgACACCAGGGCGGGGCCCAGCCGCGCCCG a score=2140.0 s hg17.chr17_random 1889756 57 + 2618010 AGCCTGCTTCTCAGCGGAACAGTCCCGCGTGGCTCGAGTGGGCCG----GCGGATGATGCC s rn3.chr17 16214755 61 + 97307196 AGCCTGCATCACAACAGAAGAGTCCCTGCTGGCAGGAGAGGGCCAAGTCGTGGGTAATGTC a score=1853.0 s hg17.chr17_random 1889970 82 + 2618010 AGGGGCCTCCCCCGCCCGGCCGAGCAGTGCAGCTGAG---GCCGCGCGGCGACCA-GAGGGCGGGGGCCATCCGCGCCTGCCAGGC s galGal2.chr3_random 637461 86 + 1636275 AGGGGCCTCCCCCCTTTTATCAGAAAGTGCTGCTGGGAGCGGTGGGAGGTGAGCAGGGGGGTGGGATCCCTCTGTTTCCCTGAGGC a score=75.0 s hg17.chr17_random 1890201 3 + 2618010 CCG s canFam1.chr18 30348284 3 + 66173745 CCC a score=-4092.0 s hg17.chr17_random 1890204 147 + 2618010 GCTGGCGGAGGGCGGGGGCGGCCGGG-ATTCCCGTGCGGGGTTGGGGCTCGTGGCGGAAG-----CTCCGGAC------CTCCCTGGCCC-GAACGGTGAGCG--CCGCCGNCCACTGGGAGCGG-----------CCAGAGCCCAGTAATCAGGACACCACCACAGGGACCA s mm5.chr11 120220951 155 + 121648857 GTCGGGGGAAGGGAGGGGTTGCCGGGCATCTCTGAACAAGAACA----TCGGCGCACCGG-----CCCCGGACACGCATTTCCCCGGCCCTGCGCTGCCAGCGAGCCCCCGCGTACCTGGCGATGGTTT---TGTACTGGACTGCGCTAATCAAGTCATCATCACAG------ s canFam1.chr18 30348287 148 + 66173745 GCGGGTCGGGGTCGGGGTCTAGTCGG-GGGCAGGTGGGGGGTGGGGGAACTGCGCCGGCGCTGTCCCCTGGGC--------CCCCAGCCT-GGGTCGGATGAG------------CCAGGCGGGGGAGCAGATGGTCCCATCCCCAGTAAAGAGGCTACCACCGGGGCTA--- a score=0.0 s hg17.chr17_random 1890351 27 + 2618010 CGTGTGTAGACCCAGGCCCCCTCACCT a score=0.0 s hg17.chr17_random 1890351 2 + 2618010 CG a score=-737.0 s hg17.chr17_random 1890353 25 + 2618010 TGTGTAGACCCAGGCCCCCTCA---CCT s mm5.chr11 120221106 3 + 121648857 -------------------------CTT s rn3.chr10 109956085 28 + 110733352 TGCGCAACATCAGTCACCATCACAGCTT a score=28227.0 s hg17.chr17_random 1890378 104 + 2618010 GGGAGTCACGTTTATTGAAAAAGTAAAAAGTGTCACAGT-----AAAAAATTCACCTGGGGACAAAGCCAGGCCTAGGA----------GGGGTGGCGGGGTCGT---------GGAGGGACGGGTCC s mm5.chr11 120221109 128 + 121648857 GGGAATTATGTTTATTGAAAAAGTAAAAAGTATCACCATTAAAAAACAAACAAACCTGGAGAAAAAGCCAGGCCAGAGAAATGGGTATAGGGGCAAGAGGGTCGTTCCCCACAAGTCCTAACCAGCCT s rn3.chr10 109956113 124 + 110733352 GGGAATTATGTTTATTGAAAAAGTAAAAAGTATCACCAT----AAAAAAAAAAACCTGGAGTAAAAGCCAGGCCAGAGAAATGGGTATAGGGGCAAGAGTGTCGTGCCCCACAAGTCCTAACCAGCCT s canFam1.chr18 30348435 109 + 66173745 GGGAATGACATTTATTGAAAAAGTAAAAAGTGTCACAAT-----AAAAAATTCACCTGGAGAAAAAGCCAGGCCAGAAGTGTGA-----GGGGT----GGGTTGTGCC---CAGGTGCGGG--GTCCT a score=883.0 s hg17.chr17_random 1890482 66 + 2618010 GGCCGCCCC--TGGCCCACGGGTGGGGCACGTGCTGGCCCATGGGCGACG-----CGCGGCTTCTCCAGGGAg s mm5.chr11 120221237 70 + 121648857 GGCTGCCTCACTGCACATCCAGTGGG---CACTCTAGTCCTTGGGGCAAGGTGCTTGCCACTTCTCCAAGGAG s rn3.chr10 109956237 70 + 110733352 GGCTGCCTCACTGCATGTTCAGTGGG---CAGTCTAGTCCCTGGAGCAAGGTGCTTGCCGCTTCTCCAAAGGG s canFam1.chr18 30348544 47 + 66173745 GGGCGCCTGCCAGCCCCACCGGTGGG-------ACAGGCCCTGG-------------------CACCTGGGGG s galGal2.chr3_random 640981 66 + 1636275 GGc--cccgcccggaccccgcccggaccccgcccgAGCCCCTCG-----CAGCCCCGCTGCCCGGCCGTGACG a score=928.0 s hg17.chr17_random 1890548 28 + 2618010 gcg---gccctgggcgcgggggcgggcgggc s mm5.chr11 120221307 18 + 121648857 GCGCAAGCCCCAAA-------------GGGC s rn3.chr10 109956307 19 + 110733352 GCACAAACACCAAA------------AGGGC s canFam1.chr18 30348591 19 + 66173745 GCAGGAGCCCCGGA------------AGGGC a score=-2626.0 s hg17.chr17_random 1890576 4 + 2618010 -AAAG s mm5.chr11 120221325 4 + 121648857 -TCTC s rn3.chr10 109956326 4 + 110733352 -AGGG s canFam1.chr18 30348610 4 + 66173745 -AGGC s danRer1.chrUn 46000734 4 + 367113659 GAGG- a score=-854.0 s hg17.chr17_random 1890580 4 + 2618010 CTGG s mm5.chr11 120221329 4 + 121648857 CTGG s rn3.chr10 109956330 4 + 110733352 CTGG s canFam1.chr18 30348614 4 + 66173745 GGGG s galGal2.chr3_random 641054 2 + 1636275 CC-- s danRer1.chrUn 46000738 4 + 367113659 CCGA a score=175447.0 s hg17.chr17_random 1890584 128 + 2618010 CTCAGTCCATCGTGGTCCC-------TTTGAAGAGCTCCACCAGCTCCTTGTAGTCCGGGTCGATGAGGTCGGAGGGCAGGTCGCCATCGTCGTTGGTTGCATCCCTGTCCGCTCCCAGGGAGATAAGGTACCTG s panTro1.chr19 81145083 128 + 82489036 CTCAGTCCATTGTGGTCCC-------TTTGAAGAGCTCCACCAGCTCCTTGTAGTCCGGGTCGATGAGGTCGGAGGACAGGTCGCCATCGTCGTTGGTTGCATCCCTGTCCGCTCCCAGGGAGATAAGGTACCTG s mm5.chr11 120221333 128 + 121648857 CTCAGTCCATGCTGGTTCC-------TTTGAAGAGTTCCACCAAGTCTTTGAAGTCCGGGTCAATAAGGTCGGAGGGCAGATCGCCATCATCATTGGCTGCATCTCTGTCTGCCCCCAAAGAGATGAGATACCTG s rn3.chr10 109956334 128 + 110733352 CTCAATCCATGCTGGTTCC-------TTTGAAGAGTTCCACCAAGTCCTTGAAGTCCGGGTCAATGAGGTCGGAGGGCAAATCGCCATCATCATTGGTTGCATCTCTGTCTGCCCCCAAAGAGATGAGATACCTG s canFam1.chr18 30348618 128 + 66173745 CTCAGTCCATCTTGGTCCC-------TTGGAAGAGCTCCACCAGGTCCTTGAAGTCCGGGTCGATGAGGTCAGAGGGCAGGTCCCCGTCATCGTTGGTGGCGTCTCTGTCTGCCCCCAGGGAGATGAGGTACCTG s galGal2.chr3_random 641056 128 + 1636275 CTCAGTCCATCGTGGCGGC-------CTGGAAAAGCTCCACCAGGTCCTTGTATTCGGGGTCGATGAGGTCCGACGGCTTCTCCCCGTCGTCCGTGGTGGCCTCCAGGCTGGCCCCCAGCGACAGGAGGTACCTG s fr1.chrUn 128685700 131 + 349519338 CTCAGTC---GTTGACTGCCAGC-AGCCCGAAAAGCACCAGCAGCTCCTTGTTGTCCGGATCAATGAGGTCAGCAGGCTTCTCGCCACAGTCGTTCTTTAATTCAGGGTCTGCGCCCAGTGACAGGAGGTAGCTG s danRer1.chrUn 46000742 134 + 367113659 -CCTGTATGTTTTAGTCACCACCGACCCCAAAAAGATGAAGCAGCTCTTTGCAGTCTGGGTCAATAAGGTCAGCCGGCTTCTCCCCACAGTCATTTTTAGCTTCAGTATCTGCACCCAGAGAAATCAAGTACCTG a score=-285.0 s hg17.chr17_random 1890712 1 + 2618010 G s panTro1.chr19 81145211 1 + 82489036 G s mm5.chr11 120221461 1 + 121648857 A s rn3.chr10 109956462 1 + 110733352 A s canFam1.chr18 30348746 1 + 66173745 G s galGal2.chr3_random 641184 1 + 1636275 C s fr1.chrUn 128685831 1 + 349519338 G a score=4092.0 s hg17.chr17_random 1890713 24 + 2618010 GGTGTAAA--GGTCGCTCTGGCTGAA s panTro1.chr19 81145212 24 + 82489036 AGTGTAAA--GGTCGCTCTGGCTGAA s mm5.chr11 120221462 23 + 121648857 GGTGTGAA--GGGCA-GGTGGTTAAA s rn3.chr10 109956463 23 + 110733352 GGTGTGAA--GGGCA-GGTGGTTAAA s canFam1.chr18 30348747 25 + 66173745 GGTGCAAACTGGCCG-TGAGGATGCG s galGal2.chr3_random 641185 24 + 1636275 GGCAGCGA--CAGCGTTCAGCCCGAg a score=60454.0 s hg17.chr17_random 1890737 197 + 2618010 GCGGGGAGGAGCCAGGAGAGTGCTCGCCCCAACCC-GGGTCAGAGGGCCAGAGTCCTGGGGTCACCTGTGTGTCCCCCACCTTGGGGTCCTAAGGTCCGGGTAGGGTGAGGAGGAAGAAACCTGACCCTTTGGAAGCTGTGGCCAGC------TTTTCAAGTTGGTTCTATTGAGGACAA--AGGCAGAAACAGGATTCCAGAAGC s panTro1.chr19 81145236 197 + 82489036 GCGGGGAGGAGCCAGGAGAGTGCTCGCCCCAACCC-GGGTCAGAGGGCCAGAGTCCTGGGGTCACCTGTGTGTCCCCCACCTTGGGGTCCTAAGGTCCGGGTAGGGTGAGGAGGAAGAAACCTGACCCTTTGGAAGCTGTGGCCAGC------TTTTCAAGTTGGTTCTATTGAGGACAA--AGGCAGAAACAGGATTCCAGAAGC s mm5.chr11 120221485 160 + 121648857 GC-----------------CTACTCAGCCCACTCCGGGGCCAAAAGGCTAGAATATTGGGGTCACCTGTTTGTTTTT------------------TCCAGGCAGAGTGAGGAGGAAGAAACCTGACCCCTTGGAAGCTGTGGCCAGA------TTTTCCGGCTTGCTCTAATGTTG-CAATCGGGTAGAAAC----TGCCAGAATC s rn3.chr10 109956486 160 + 110733352 GC-----------------CTAGTCAGCCCATCCTGGGGCCAGAGGGCTAGAATTTTGGGGTCACCTGTTTGTTTTT------------------TCCAGGCAGAGTGAGGAGGAAGAAACCTGACCCCTTGGAAGCTGTGGCCAGA------TTTTCCAGCTTGCTCTAATGTTG-CAATCAGATAGAAAC----TGCCAGAATC s canFam1.chr18 30348772 174 + 66173745 GTCAGGAGGAG----------------CACAGGCTGAGTCCTGAGGG---GCATCTTGATTTTGTTTTTGTTTTGTT----TTAATTTT------TCCAGGAGGGGTGAAGAGGAGGAAACCTGATCCTCCAGAAACAAAGGCTGGAGGGAAGTTT---AGTTTGCTCTGGGGAAGGCAGGAGGGCAGGAAGGAGACTCGAGAAGC a score=734.0 s hg17.chr17_random 1890934 3 + 2618010 CTC s panTro1.chr19 81145433 3 + 82489036 CTC s mm5.chr11 120221645 3 + 121648857 CCT s rn3.chr10 109956646 3 + 110733352 CCT a score=26581.0 s hg17.chr17_random 1890937 315 + 2618010 TAGGGTTTGCAGGGttcntttttttgttttttttgttttttgagacnagaatttcgctctntatcacccanggnctggagtgcaatggcatgatctcgactcacggcaacctccacttcccgggttcaagtgattctcctgcctcagccttgagtagctgggattacaggcgcgcgccaccacgcgtggctaattttgtatttttagtagtgagagggttcttgtcacgaactcctgaccntcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcgcaggcgtgagccaccgcccccagcc s panTro1.chr19 81145436 308 + 82489036 TAGGGTTTGCAGGGttc-tttttttgttttttt-gttttttgagac-agaatttcgctct-tatcacccagg--ctggagtgcaatggcatgatctcgactcacggcaacctccacttcccgggttcaagtgattctcctgcctcagccttgagtagctgggattacaggcgcgcgccaccacgcgtggctaattttgtatttttagtagtgagggggttcttgtcacgaactcctgacc-tcaggtgatccgcccacctcggcctcccaaagtgctgggattacaggcgcaggcgtgagccaccgcccccagcc a score=465.0 s hg17.chr17_random 1891252 4 + 2618010 TCTA s panTro1.chr19 81145744 4 + 82489036 TCTA s canFam1.chr18 30348947 4 + 66173745 CCGA a score=9647.0 s hg17.chr17_random 1891256 104 + 2618010 GGGTTCTTGCCGACACCACCCGGGCTACATTTTGGG-GCTCCCATCCTGGGGACCCACTGAGGCCCGGAGGGGTCGGGTTCAAGCCTGTGTAGACCCAGGGCCCC----- s panTro1.chr19 81145748 103 + 82489036 GGGTTCTTGCCGACACCACCCGGGCTACATTTTGGG-GCCCCCATCCTGGGGACCCACTGAGGCCCGGAGGGGTCGGGTTCAAGCCTGTGTAGACCCAGG-CCCC----- s mm5.chr11 120221648 87 + 121648857 GAGTTGATGCCTACATCCTCAGAGCCATATTTTGG-------------GGGGGTCCA------CCTGGAGAGATTAGGATGAAACCTCT---GAACCACA-TTCCATAGT s rn3.chr10 109956649 85 + 110733352 GAGTAGCCGCCTACATCCTCAGAGTCACATTTT---------------GGGGGTCCA------CCTAGGGGGATTAGGATGAAGCCTCT---ACAACGCA-TTGCATAAT s canFam1.chr18 30348951 68 + 66173745 GGGTTCCTAGCCGTACGACCAGGGCCCCCTTCGGGGAGACCACGTCCTGGAGCCCCT-------------------------GGCCTGA------------CCCT----- a score=5325.0 s hg17.chr17_random 1891360 3 + 2618010 CTC s panTro1.chr19 81145851 3 + 82489036 CTC s mm5.chr11 120221735 3 + 121648857 CTC s rn3.chr10 109956734 3 + 110733352 CTC s canFam1.chr18 30349019 3 + 66173745 CTC s fr1.chrUn 128686016 3 + 349519338 CTC s danRer1.chrUn 46001072 3 + 367113659 CTT a score=269645.0 s hg17.chr17_random 1891363 163 + 2618010 ACCTGGCTATGTCAGGGTACCCATCGCTGNCAGGCAATGTGCAGGGGTGTCCAGCCCGCCTCATCTCGCTGGTGAATGTCAGCCCCGTATTTGACCAGCAGCTTCACGCATTCCNANGGTTNCCAGAGAGCACGGCTTCATGCAANGCNGCCAGGCCTGGGCA s panTro1.chr19 81145854 160 + 82489036 ACCTGGCTATGTCAGGGTACCCATCGCTG-CAGGCAATGTGCAGGGGTGTCCAGCCCGCCTCATCTCGCTGGTGAATGTCAGCCCCGTATTTGACCAGCAGCTTCACGCATTCCA--GGTTTCCAGAGAGCACGGCTTCATGCAAGGCGGCCAGGCCTGGGCA s mm5.chr11 120221738 160 + 121648857 ACCTGGCTATGTCAGGGTACCCATCACTG-CAAGCGATGTGCAGTGGTGTCCAGCCTGTCTCATCCCGCTGGTGAATGTCAGCCCCGTATTTGACTAGCAACTTCACACACTCTA--GGTTTCCAGAGAGCACAGCTTCATGCAGAGCAGCCAGTCCTGGGCA s rn3.chr10 109956737 160 + 110733352 ACCTGGCTATGTCAGGGTATCCATCACTG-CAAGCGATATGCAGTGGTGTCCAGCCTGTCTCATCCCGCTGGTGAATGTCAGCACCATATTTGACTAGCAACTTCACACACTCCA--GGTTTCCAGAGAGCACAGCTTCATGAAGAGCAGCCAGGCCTGGGCA s canFam1.chr18 30349022 160 + 66173745 ACCTGGCTATGTCGGGATAGCCGTCACTG-CAGGCGATGTGCAGGGGTGTCCACCCGGTCTCGTCCCGCTGGTGGATGTCTGCGCCGTATTTGACCAGCAGCTTCACGCACTCCA--GGTTTCCAGAGAGCACTGCTTCGTGCAGGGCGGCCAGGCCTGCGCA s galGal2.chr3_random 641251 160 + 1636275 ACCTGGCGATGTCGGCGTGGCCGTCGCTG-CAGGCCATGTGCAGGGGCGTCCAGCCGTTCTCGTCCCTCTGGTGGATGTCGGCGCCGTACTTCACCAGGAGCTTGACGCAGTCCA--GGTTCCCCGTGAGCACCGCTTGGTGCAGGGCGGCCATTCCTGCGGG s fr1.chrUn 128686019 160 + 349519338 ACCGTGCAATATGTGGGAAGCCATCGCTG-CAGGCCATGTGCAGCGGGGTCCATCCCTCCTCGTCCCTCTGGTGAATATCTGCTCCATGGTGGACCAGCAGCTTGACGCACTCCA--GGTTCCCGGACAGGACGGCCTCATGTATAGCGGCCATACCTACATA s danRer1.chrUn 46001075 160 + 367113659 ACTTGGCTATCTCTGGAAAGCCATCACTG-CAGGCCATGTGTAGTGGAGTCCATCCATCCTCATCTCTCTGGGTGATGTCAGCTCCAGATTTGACAAGCAGCTTAACACACTCCA--TGTTTCCAGATAAAACTGCCTCATGAATAGCTGCCATGCCTTTTCA a score=7424.0 s hg17.chr17_random 1891526 23 + 2618010 GGG-AGGACGGGAGGGGTCAAGAC s panTro1.chr19 81146014 23 + 82489036 GGG-AGGACGGGAGGGGTCAATAC s mm5.chr11 120221898 23 + 121648857 GGG-TGGGAACACAGGGTCAAAGC s rn3.chr10 109956897 23 + 110733352 GGG-TGGGAACACAGGGTCAAAGC s canFam1.chr18 30349182 24 + 66173745 GGACAGGGCGCGAGGGGTCAAGGC s galGal2.chr3_random 641411 23 + 1636275 GGA-GGGACGGGTTGGACCGCGGC s danRer1.chrUn 46001235 19 + 367113659 -----ATCAGCAAAGCATTAATAT a score=-414.0 s hg17.chr17_random 1891549 3 + 2618010 TNN s panTro1.chr19 81146037 3 + 82489036 TGA s mm5.chr11 120221921 3 + 121648857 TGT s rn3.chr10 109956920 3 + 110733352 TAT s canFam1.chr18 30349206 3 + 66173745 CGA s danRer1.chrUn 46001254 3 + 367113659 TAT a score=-20251.0 s hg17.chr17_random 1891552 66 + 2618010 GCCCCAGGTCAGGTCCTCCT----TGCTGGCCTCTCCCACCACCCC-ACAGGCC-CTGGCCAGCTCTTCCAG s panTro1.chr19 81146040 67 + 82489036 GCCCCAGGTCGGGTCCTCCT----TGCTGGCCTCCCCCACCACCCCCACAGGCC-CTGGCCAGCTCTTCCAG s mm5.chr11 120221924 57 + 121648857 AACCC---TCAGAA-----------GAGGATCTCCCCTGCCTCCTT-ATGGACAGAAGGCCAGACTCTCAGT s rn3.chr10 109956923 57 + 110733352 AACCC---TCTGAA-----------CAGGATTTCCCCTGTTTCCTT-ATGGACAGAAGACCAGTCTCTCAGT s canFam1.chr18 30349209 40 + 66173745 GACCT---------------------------TGCCCTGACACCCC-ACAGACC----CTCCGCTGGTCCGG s galGal2.chr3_random 642364 55 + 1636275 -GCCCGGAGCCGAG-----------CTGTGTCTGCGCCG-CTCCCA-GCAGGCCGTGACACTGCAGCTC--- s danRer1.chrUn 46001257 72 + 367113659 AATACAGGTTTAGACAGCCTTCTATCTATATTTAGCAAGTTATCTGCATGGGTCTGAACATAGATTTTCTTT a score=192607.0 s hg17.chr17_random 1891618 132 + 2618010 ------------GCTTTGCTCACCTGAGGGGTGGATGGTGGCCAGGGAGACTTTCCGAGTCCGGATGAAGCGCCCCACCTGCTCCAGGTCACCCTGCCGGATGTGGTCCAAGAACAGGACATCATTAGGGAAACGCACGCTGCG s panTro1.chr19 81146107 132 + 82489036 ------------GCCTTGCTCACCTGAGGGGTGGATGGTGGCCAGGGAGACTTTCCGAGTCCGGATGAAGCGCCCCACCTGCTCCAGGTCACCCTGCCGGATGTGGTCCAAGAACAGGACATCATTAGGGAAACGCACGCTGCG s mm5.chr11 120221981 132 + 121648857 ------------TATCTACTCACCTGAGGGATGGATAGTGTCTAGGGAGACTTTCCGAGCCCGGATAAAGCGTCCCACCTGCTCCAGGTCGCCTTGTCGAATGTGGTCCAAGAAGAGAACATCGTTAGGGAAGCGCACGCTCCG s rn3.chr10 109956980 132 + 110733352 ------------TATCTACTCACCGGAGGGGTAGATAGTGTCTAGCGAGACTTTCCGAGCTCGGATAAAGCGCCCCACTTGCTCCAGGTCGCCTTGGCGGATGTGGTCCAAGAAGAGAACATCATTAGGGAACCTCACACTCCG s canFam1.chr18 30349249 132 + 66173745 ------------CAGGCACTCACCTGACGGGTGGATGGTGTCCAGGGCGACTTTCCGAGCCCGGATGAAGCGCCCGACCTGCTCCAAGTCACCCTGGCGGATGTGGTCTAGGAACAGGACGTCATTCGGGAAGCGCACGCTGCG s galGal2.chr3_random 642419 132 + 1636275 ------------GCAGCACTCACCGGAGGGGTAGATGGTGTCCAGAGCCACTTTCCTGGTACGTATGAACCTGCCCACCTGCTCCAGGTCCCCCTGCCTGATGTGGTCCTGAAAGATGACGTCGTTGGGGAAGTGCACCGTACG s fr1.chrUn 128686250 132 + 349519338 ------------GCTTCCCTCACCGGAGAGGTAGATGGTGTCCAGGCTGACTCTTCTGGCTCGGATGAAAGGTTCGATCCTCTCCAGCTCCCCGTGTTTCACATAGTCCTGGAAGACGACGTCATTGGGGAAGTGCACGCTGCG s danRer1.chrUn 46001329 144 + 367113659 TCTTTGAAGACTGGTTTTCATACCTGAATGATAGATGGTGTCCAGACTCACTCTTCTGGTTTGAATAAAGCATCCAACTCTTTCCAGCTCTCCTTGACGAACACAATCTTGGAAGACTATGTCATTGGGAAAGTGAACAATACG a score=1373.0 s hg17.chr17_random 1891750 4 + 2618010 ATCA s panTro1.chr19 81146239 4 + 82489036 ATCA s mm5.chr11 120222113 4 + 121648857 ATCG s rn3.chr10 109957112 4 + 110733352 ATCA s canFam1.chr18 30349381 4 + 66173745 ATCC s galGal2.chr3_random 642551 4 + 1636275 TGAA s danRer1.chrUn 46001473 4 + 367113659 AGCA a score=31705.0 s hg17.chr17_random 1891754 114 + 2618010 GCCAGCATCCGCCGCCGCCGCTGCCGTGGGCTGTAGCG-GGCATAGCGGGCAG-----------TTCTGCTA-----------GGCATCTTGGGC---GCTGTGGGG------------------------CAGGTTGCCCCTGGGGA----------------------CCCTACTGCACTGGGG s panTro1.chr19 81146243 114 + 82489036 GCCAGCATCCGCCGCCGCCGCTGCCGTGGGCTGTAGCG-GGCATAGCGGGCAG-----------TTCTGCTA-----------GGCATCTTGGGC---GCTGTGGGG------------------------CAGGTTGCCCCTGGGGA----------------------CGCTACTGCACTGGGG s mm5.chr11 120222117 100 + 121648857 GCCAACATCCGCCGCCTCCGCTGTCGGGGGCTGTAGCG-AGCATAGCGGACCG-----------TTCGGCTG-----------GGCATCCTGGGA------TTGAGG------------------------TGGGCTATCTCTGTGGG---------------------------------TATGA s rn3.chr10 109957116 112 + 110733352 GCCAACAGCCTCCGCCGTCGCTGTCGGGGGCTGTAGCG-AGCGTAGCGGACTG-----------TTCTGCTG-----------GGCATCCTGGGA------TTGGGG------------------------TTGGCTATCTCTGTGGG---------------------ACCCTACTTCGGTGGGT s canFam1.chr18 30349385 112 + 66173745 GCCAGCAGCCGCCTGCGCCGCTGCCGGGGGCTGTAGCG-GGCATAGCGGCTGG-----------TCCTGCTG-----------GGCATCCTGGGT---GCCGTGGAG--------------------------GGCCCACCTTGTGGG--------------------GACCCTGCTTC--TCGGG s galGal2.chr3_random 642555 180 + 1636275 GCTCTCAGTCTCTGGCGATACC------GACTGTACCGAGGCATTGAGACCGGGAAATAGTCCTTCATGCTGCCCCCAGCCCCGGGATGCTGTGCAGGAATGTGGAGACTGCACGTGGGCAGCGCTCGGCCCGTGCTGCCCTCAGAGCACCGCTTTCCTTCCCTCTCAGGCCCGTCTCTGCTGGGA s fr1.chrUn 255090498 93 - 349519338 ---------------CTTTGC-------GGGGGCGACG-GGTATGACTGGCGCGGGA-------TTTTCCCG-----------CGTTTGC-GTTC---GCTGTGTGG--------------------------AGCTGTACCTAGAGC----------------------CCTTGCTGTATGAGGG a score=109016.0 s hg17.chr17_random 1891868 247 + 2618010 TTAAT---AATGTATCCGGTCCCGACCAGA----------------------------TCAGCTTGAGGGCTCCTGTCGGAC----------GAGCCCCGGCCT---------------------CTGA--------------CTTG--CTTATATAGGGCTCA-GGGGCTA-TATAAAGCTGCACGG-TCATCCTCCCCGGCGCGAGGGGCTGAAACTGAGCTGCACC-CCCGCCCC-----------GCACCCC--------AGATCATGTTTAGTGACTCATCTTTCAGCCCATCTGTCACCGTG-CCCGGCCAAAGGGGTCAGATCATTCCTGCCTGTCGCTCCC s panTro1.chr19 81146357 247 + 82489036 TTAAT---AATGTATCCGGTCCCGACCAGA----------------------------TCAGCTTGAGGGCTCCTGTCGGAC----------GAGCCTCGGCCT---------------------CTGA--------------CTTG--CTTATATAGGGCTCA-GGGGCTA-TATAAAGCTGCACGG-TCATCCTCCCCGGCGCGAGGGGCTGAAACTGAGCTGCACC-CCCGCCCC-----------GCGCCCC--------AGATCATGTTTAGTGACTCATCTTTCAGCCCATCTGTCACCGTG-CCCGGCCAAAGGGGTCAGATCATTCTTGCCTGTCGCTCCC s mm5.chr11 120222217 245 + 121648857 GTGAG---AAAGTGTCCCTACCAGACCAGA----------------------------TCTGTGTAAGCTCTCCTGCTCGACA---------GAACCTCGATT----------------------------------------CCAG--CTTATAAAGGGCTTGCGAGGCTA-TATAAAGCCACGCAG-TCATGCTTGCAGACGCGAGGGGCTGAAACTGAGCTGCTCCGCGCTCCCT-----------GAGCACA--------GGATCATGTTTAGTGGCTCATCTTTCAGCACACCTGTCACTATG-TCCGGCCAAAGGGGTCAGATCCTTCCTGGCTACTACTCCC s rn3.chr10 109957228 258 + 110733352 ATGAGTAAGAAGTATGCCAACCGGACCAGA----------------------------TCTGCGCAACCTCTCCCGCTTGACA---------GAACCTCGATT----------------------------------------CCAG--CTTATATAGGGCTTGCGAGGCTA-TATAAAGCCACGCAG-TCATGCTTGCAGACGCGAGGAGCTGAAACTGAGCTTCCCC-CCCACCCCCAACCCCCTTTGAGCACA--------GGATCATGTTTGGTGGCTCATCTTTCAGCACACCTGTCGCCATG-TCCGGCCAAAGGGGTCAGATCCTTCCTGGCTACTACTCCC s canFam1.chr18 30349497 268 + 66173745 GAAGG---GACGTGTCCGGCCCGGGTCACACAACGCATGCAGTCTTTTCCAGTGCCACCCTGCTCCCGTGCTCCCCTGTGACC---------AGGGCACGTCC----------------------------------------CT----CTTATATAGGACTCGCAGCGCTA-TATAAAGCTGCGCAG-TCATGCTCAC-GCCGGGAGGGGCTGAAACAGAGCAGCTCT---GGCCCT-----------GCGCTCA--------GGATCATGTTTAATGGCTCATCTTTCAACCCACCTGTTGCTGTGCCCCGGCCAAAGGGGTCAGGTCCTTCCTGGCCACTGTCGTC s galGal2.chr3_random 642735 291 + 1636275 GGTGC---GATGCAGCCCGGCCCCGCTGGG----------------------------CCTGCTGTGAGCAGCCTGCTGAGCCTGCAGGAGGTGGCAACGGCCTTGTGCCACTCTGGACTCAGGACTGATGGTTCTCTGGGGGCTCGGTGTTATATAGGCTCCG-GGGGCTATTCTGGGGACGTGCAGCTCATGCTGCTTACTCTGATACTTGGTAATCGAGCCGCCCA----GGCCG-----------GAGCCTCCCACTTTTGGGCAGAGGTTGGTGTCTCGTCTTACCGCCCACCTGTTGATGTG-CCCATCC-AAGGGGTCAAAC---------CTGCTGCTCCC a score=58184.0 s hg17.chr17_random 1892115 278 + 2618010 TGCCCCACAGNCTGGACCTAGAAGGTGCCTTACCGAGGGCAGGAGGAGGCACC---GGTGCAGAACCCATG-AGATAGCTAGGAACGCGAGATCAAGGGCA-CAGTAGGTACCAAGG----------------------TCATTGGAAGG------------------GCTTTTGCTCTCTACCTCCTGGAAAGTGAGGGGCGGCCNACCCCCTCCACATCTGCAGAAGCACAGGTCCACCGTGCTGTGGTGAAACAGGCCTTAGCCCC-TCCATCTCCCNTACCTGTCNAGTTTTCACCTTCC--AGCGTGGCTTGCCTCACTCT s panTro1.chr19 81146604 274 + 82489036 TGCCCCACAG-CTGGACCTAGAAGGTGCCTTACCGAGGGCAGGAGGAGGCACC---GGTGCAGAACCCATG-AGATAGCTAGGAACGCGAGATCAAGGGCA-CAGTAGGTACCAAGG----------------------TCATTGGAAGG------------------GCTTTTGCTCTCTACCTCCTGGAAAGTGAGGGGCGGCC-ACCCCCTCCACATCTGCAGAAGCACAGGTCCACCGTGCTGTGGGGAAACAGGCCTGAGCCCC-TCCATCTCCC-TACCTGTC-AGTTTTCACCTTCC--AGCGTGGCTTGCCTCACTCT s mm5.chr11 120222462 249 + 121648857 T-CTCCGCAG-CTGGACCTAGAAGGTGCCTTATAGAGGACAGAAGG----ACT---AGGAGAGAGTCCATGAAGAAAGCTGTGGATGTGAGCTCAAGGGCATCAAGAGGGTCTAAGC----------------------TTAAAGGATGAT-----------------GGATCACCTGTCTACCTACTGGGAGCTGA----------GCTCCCTCCCCATCTGAAG-AGCACCAATCCATTGTCATTTAGG-----AGGTCACAGCCCTGTCCATTTCCC-AATGTGTC--ACTCTCACCTCTCCAAGAGTAGATT---------- s rn3.chr10 109957486 250 + 110733352 T-GCCCGCAG-CTGGACCTAGAAGGTGCCTTATAGAGGAGGGAAGG----ACT---GGGAGAGAGTGCATGAAGAAAGCTGTGGGAGTGAGCTCAAGGGCATCAAGAAAGTCTAAAC----------------------TTGAAGGATGAT-----------------GGCTCACCTGTCTACCTGCTGGAAGCTGA----------GCTCCCTTGGCATCTGAAGAGCAACTGATCCATTGACATTTAGG-----AGGTCACAGCCCAGTCCATTCTCC-AGCATGTC--ACTCTTACCAACC--CTTGTGGGTT--------CT s canFam1.chr18 30349765 297 + 66173745 TGCTCCACAG-CTGGGCCTAGAAGGTG-TTTACAGAGGACAGGAGAAGGCACTAGAAGGACAGGACCCATA-AGGAAGACAAGTGGGT---ACCAAGGTCACGGAGAAGACCCAGGCATCTCCCAGAGACCTGGTAACTCCGAAGAAAGGCCGTGATGTCTGGTGAAGGTGGCTGCT-TCGACCTCCGGGAAAGCCAGGG-------GCTGCC--CACAGCTGAGG---CACAGGGCCCTGAGCATGACAG---AGAAGGCCCAGCCCCGTCCGTATCTC---CCGGTC-ACTTGTCACCTTC---ACCAGGGCCTACACCACTTC a score=5177.0 s hg17.chr17_random 1892393 28 + 2618010 CAGTGGTTTTCCCAAAACTACTCTGATg s panTro1.chr19 81146878 28 + 82489036 CAATGGTTTCCCCAAAACTACTCTGATg s mm5.chr11 120222711 18 + 121648857 ----------CCCAAAACTGCCTTTAGG s rn3.chr10 109957736 28 + 110733352 AGAGAAGATTCACAGAACTACCTTTAGG a score=23653.0 s hg17.chr17_random 1892421 280 + 2618010 gcctaggcaggcggatcatgaggtcaggagatcgagaccatcctggnctaacacggtgaaaccccgtctctactaaatatacaaaaaattagccgggcgtgatggcgggcgcctatagtcccagctacttgggaggctggggcaggagaatggcgtgaacccgggagngcggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagcaagactctgtctcaaaaaaaaaanaaaaaaaaaaaaaaaTGACTCTGATGGTGCT s panTro1.chr19 81146906 269 + 82489036 gcctaggcaggcggatcgtgaggtcaggagatcgagaccatcctgg-ctaacacggtgaaaccccgtctctactaaatatacaaaaaattagccgggcgtggtggtgggcgcctatagtcccagctactcgggaggctggggcaggagaatggcgtgaacccgggag-gcggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagcgagactctgtctcaa---------aaaaaaaaaaaaaaaTGACTCTGATGGTGCT a score=30509.0 s hg17.chr17_random 1892701 286 + 2618010 GCCTCCTGCTCAGAAACCCCGCAGGCATCCTTGGCTGGGATCTCAGTGCCTCAGGCTCCTGCTCAGTCAGTCCTGCGACTTTTCCTCCACGTGCCTGGNTCCCCTGCCTCACACACCTGCAGGGGACAGGGTATTCCCTACACACTCATGGGTTCACCCTGCATAGTGTCTCTGCATTCCAGGTTTGACACACATACTCACACTTAAGGTGGTGTCCAGTTTGCTCTCCACGTTCAGGGACCATCACA-CCCT-GGGTGGTGTGCTCTCT---CTGCCCCGGCCCCTGTGA s panTro1.chr19 81147175 286 + 82489036 GCCTCCTGCTCAGAAACCCCGCAGGCATCCTTGGCTGGGATCTCAGTGCCTCAGGCTCCTGCTCAGTCAGTCCTGCGACTTTTCCTCCACATGCCTGGCTCCCCTGCCTCACACACCTGCAGGGGACAGGGTATTCCCTACACACTCATGGGTTCA-CCTGCATAGTGTCTCTGCATTCCAGGTTTGACACACATACTCACACTTAAGGTGGTGTCCAGTTTGCTCTCCATGTTCAGGGACCATCACACCCCT-GGGTGGTGGGCTCCCT---CTGCCCCGGCCCCCGTGA s canFam1.chr18 30350062 232 + 66173745 GCCCTCCG--------CCTCACAAATGTCCCAGGTTGGAATCTGAAGA---AAGGCCTCCGCTCG-------CCACAGCCCATCCCACACTTGTT----TCCCTTGACCCCCGCCTCT--------------------------CCCCTGGGTCCAGGCTCC----TGCCACTTACTGCCAAG---GCCACGCGTGCTCCCACTGAAGGGAACAT-CGGTCTGCCCTGCAGG---ATGGACCATCACATCCCTAGGGGGGCGCGCACTCTGGCCGGCCCAGACCCCTGGGA a score=946.0 s hg17.chr17_random 1892987 10 + 2618010 TCTTACCTCT s panTro1.chr19 81147461 10 + 82489036 TCTTACCTCT a score=29478.0 s hg17.chr17_random 1893017 322 + 2618010 ttttttgtttgtttgtttgagtcagagtctcactctgtcgcccaagctggactacattggcgcaacctcggttcactgcaacctctgcgtcccgggttcaagtaattattttgcctcaccttctcgagtagctgggactacaggggcatgcaccaccacgtctggctaatttttgtatttttagtagagacggggtttcaccatattggccaggctggtctcaaactcctggccttgtgatccgcccgcctcggcctcccaaagtgctgggattacagacgtgagccactgcgcccagccAAGGGAATTTTTAAAACTCGTG s panTro1.chr19 81147572 322 + 82489036 ttttttgtttgtttgtttgaatcagagtctcactctgttttccaagctggactacattggcgcaacctcggttcactgcaacctctgcgtcccgggttcaagcgattcttttgcctcaccttctcaagtagctgggactacaggggcatgcaccaccacgtctggctaatttttgtatttttagtagagacggggtttcaccatattggccaggttggtctcaaactcctggccttgtgatccgcccgcctcggcctcccaaagtgctgggattacagacgtgagccactgcgcccagccAAGGGAATTTTTAAAACTCGTG a score=1692.0 s hg17.chr17_random 1893339 3 + 2618010 TTC s panTro1.chr19 81147894 3 + 82489036 TTC s mm5.chr11 120222924 3 + 121648857 TTC s rn3.chr10 109958028 3 + 110733352 TTC a score=27892.0 s hg17.chr17_random 1893342 202 + 2618010 CAACAGGC-TCTTCATTGCTGGCTGCCTTTACTTTTGCAACAGCCCCAGTGGAGGTCCAAAGTAGGGCTTGGACT----ACAGGACATGAG-----NAAGTGGATGGGATGGGACACAGACACAGAGTT-GACCAGGGAGGT-------CTTTGTTGTCAGG-----GACAGCGATCGATTGTGCTAGGAGCACTGCAGCACTTGAAGCTGGAtggatgagtctg s panTro1.chr19 81147897 202 + 82489036 CAACAGGC-TCTTCATTGCTGGCTGCCTTTACTTTTGCAACAGCCCCAGTGGAGGTCCAAAGTAGGGCTTGGACT----ACAGGACATGAG-----CAAGTGGATGGGACGGGACACAGACACAGAGTT-GACCAGGGAGGT-------CTTTGTTGTCAGG-----GACAGCCATCGATTGTGCTGGGAGCACTGCAGCACTTGAAGCTGGAtggatgagtctg s mm5.chr11 120222927 209 + 121648857 CTGCAG----CTTCTTTGCCAGCTGTC-TTGCTTTTACAACAGGTTCAACTGTGGTGTCAGGCGATGCTTGG-CT----TGGGGGTATGAGACTACCAGGTAGACAGAATG-----CAAGAACAGAGTTGGGCCAGAGGAGCCCAGAAGCTTGGCTGTGGAGCTACAGATAGCTCCCAACTCAACAGCTTCCCCTGCATCCCTGAATGCT-AATGGTGGACTCTG s rn3.chr10 109958031 212 + 110733352 CTGTAGACACCCTACCAGCTAGCTGTC-TTGTTTCTGCAACAGCTTCAGCTGTGGGTCTCAGGGATGCTTGG-CT----TGCGGGTATGAGACTACCTGGTAGATGGGATG-----CAAGAACAGAGCTGGGCGAGACAGGCCCAGAAGCTTGGTTATGGAGCTGTGGATAGCTTTCAACTCTGCAGCTTCCCCGGTGTTCCTGAAAGCC-AATGG-CGACTCTG s canFam1.chr18 30350306 168 + 66173745 CAGAGGGCTGAGCCGTCGCTCACTGTCTTCAC---CGCAGCAGCCACGTCTGGAGGT--------GGCTTCCGCTTCCGTGGGGAGAAGGG-----CCAGTGGAC---ATG------------AGCGCG-CACGAGTGGGAG-------CATACCTGTCGGGTCGGGGGCAGC------------------CCCTGCAGCCCGTGAGGTTGGCTGGCTGCAtttg a score=6759.0 s hg17.chr17_random 1893544 42 + 2618010 ccggggctgtcttcacagacca-cagantgagtggcttaaaaa s panTro1.chr19 81148099 42 + 82489036 ctggggctgtcttcacagacca-cagactgagtggcttaaaaa s rn3.chr10 109958243 41 + 110733352 TCATGGTTGCTGTAACAAAGTA--ACACAGATTGGGTTAAACA s canFam1.chr18 30350474 42 + 66173745 gtagggctgctgttgcaaaggaccagactggg-ggcttaaaac a score=273.0 s hg17.chr17_random 1893586 1 + 2618010 a s panTro1.chr19 81148141 1 + 82489036 a s rn3.chr10 109958284 1 + 110733352 A a score=81252.0 s hg17.chr17_random 1893587 928 + 2618010 cagatggttggccaggcgtggtggctcaaccctgtaatcccagcactttgggaggccgaggcaggtggatcacctgaggtcaggtgttcgagaccagcctgaccaacaaggtgaaaccccttctctactaaaaaatacaaaaattaggccgggcacggtggctcatgcctgtaatcccagcactttgagaagccgaggcgggtggatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccgtctctactaaaaatncaaaaaaaaaaaaaaaaaa-ttagccgggcgtggtggcgggcgcctgtagtcccagctactcaggaggctgaagcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgtgccactgcactccagcctgggtgacagagcaagactccatctcaaaaaaaaa--ggccaagcgcgttggcttacgncctgtaatcccaacactttgggaggccanggcaggtgnatncacgaggtcaggagatcgagaccatctggctaacacggtgaaaccccatctctactnaaaaatacaaaaaattttctgggcatggtggcaggcgcctatagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagccaagatcgcgccantgcactccagcctgggcgacagagcgagactctgtctcgggnaaaaaaaa-tacaaaaattagctgggtgtggtggcaggcgcctctagtcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgaactgacatcacaccactgcactacagcctggg-gatggagcaagactccgtctcaaaaaaaaaaaaaaaaaaaa---gacggtccg s panTro1.chr19 81148142 933 + 82489036 cagatggttggccaggcgtggtggctcaaccctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggtgttcgagaccagcctgaccaacaaggtgaaaccccttctctactaaaaaatacaaaaattaggccaggcacggtggctcacgcctgtaatcccagcactttgagaagccgaggcgggtggatcacgaggtcaggagattgagaccatcctggctaacacagtgaaaccccatctctactaaaaatacaaaaaaaaaaaaaaaaaaattagccgggcatggtggtgggcacctgtagtcccagctactcaggaggctgaagcaggagaatggcgtgaacccgggaggtggagcttgcagtgagccgagatcgtgccgctgcactccagcctgggtgacagagcaagactccatctcaaaaaaaaaaaggccaagcgcggtggcttacg-cctgtaatcccagcactttgggaggccaaggcaggtggat-catgaggtcaggagatcaagaccttctggctaacatg-tgaaaccccatctctactaaaaaatacaaaaaaatttctgggcatggtggcaggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggcagagcttgcagtgagccaagatcgcgccactgcactccagcctgggcgacagagcgagactctgtctcgggaaaaaaaaaatataaaaattagctgggtgtggtggcaggcgcctctagtcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgaactgacatcacaccactgcactacagcctgggcgatggagcaagactccgtctcaaaaaaaaaaaaaaaaaaaaaatgatggtccg a score=24784.0 s hg17.chr17_random 1894515 196 + 2618010 tcccagagctctggaggct-gaaatctgggatccgggtttcagcagggcaggttcctcctgaggctctgaggagcgtctgtcgcaagcct-ctccccagcttctggtgccgccagcaatcctggtgtccttggccctagcagcatcgcca-cgatctcggccttcatctcca--tggtgttctcccagcctttgtcactgt s panTro1.chr19 81149075 196 + 82489036 tcccagagctctggaggct-gaaatctgggatccgggtttcagcagggcaggttcctcctgaggctctgaggagtgtctgtcgcaagcct-ctccccagcttctggtgccgccagcaatcctggtgtccttggccctagcagcatcgcca-cgatctcggccttcatctcca--tggtgttctcccagcctttgtcactgt s canFam1.chr18 30350523 188 + 66173745 tctcatgattctagaggccagaagtccaagatcaaggtgtcagcatcctgggttcct--------tccaaggagaatctgttccgggcccacgtcctggggtctggaggtgct-----ccttggggttctctcgttgacggacatatccacccatctctgccctcacgttcatgtggccttctccctgtgtgcgtgtctgt a score=91.0 s hg17.chr17_random 1894711 1 + 2618010 t s panTro1.chr19 81149271 1 + 82489036 t a score=13238.0 s hg17.chr17_random 1894712 103 + 2618010 cacatcacccccttgtataaggacaccagtta------------------tagttgggtattgcctcatcttaaccagtgacatctgcaagcatcctgntttccnaacaacggtcacattc s panTro1.chr19 81149272 102 + 82489036 cacatcacccccttgtgtaaggacaccagtta------------------tagttgggtattgcctcatcttaaccagtgacatctgcaagcatcctg-tttccaaacaacggtcacattc s canFam1.chr18 30350884 119 + 66173745 caaattttcactttttataaggacactagtcatgggatcaggctccttcctggtccaggaagagctcatcttgactggtcacatctgtgacaactgta-tttccaaataa-gatcatgtac a score=68796.0 s hg17.chr17_random 1894815 252 + 2618010 tgaggtcttgagggctaggacttcanacgttaattaaggagacacatgagtcaacc----cataaTGCTGGTAAAACCCTGC-AGGTGG--TCACTAAAGGCCTGAATGAGGACAGAACCAAGACTGGCCAGCAG----------CTCTTTGCAGGGGCAGAGGAG---AGCTGGGCCACCAACAGCCTCGCATCATTAGGCTGATCTGCATCCAACGAAATCAAATCAGCAAACATATTAGACA-CCTCTAGGTGCAAAGCCTT-GGCCAAAT s panTro1.chr19 81149374 251 + 82489036 tgaggtcttgagggctaggacttca-acgttaattaaggagacacatgagtcaacc----cataaTGCTGGTAAAACCCTGC-AGGTGG--TCACTAAAGGCCTGAATGAGGACAGAACCAAGACTGGCCAGCAG----------CTCTTTGCAGGGGCAGAGGAG---AGCTGGGCCACCAACAGCCTCGCATCATTAGGCTGATCTGCATCCAACGAAATCAAATCAGCAAACATATTAGACA-CCTCTAGGTGCAAAGCCTT-GGCCAAAT s mm5.chr11 120223895 231 + 121648857 AAAAGTATTGAGAGCTAGG-------ACATAAATTTGTGAG--ACTGGAGACAACCCACTCACTATACTGATGAGA--TTGCTAGGTGA--TCGTGAGAGGCCTGTGCCTGGACAGAGACTTGGCAGGCTGGCGA----------------GCTGGGACAGCAGTG------TGGTTAGCAGTGGGCCTTACATCACCTGGCTGCTTTCCAGCCATCG---TCA----AGCCAACATGTCACACACCCTGTAGGTGTAAAGCCGA-GGTCCACT s rn3.chr10 109959318 230 + 110733352 AGTAGTATTGAGAGCTAGG-------GCATAAATTTGTGAG--ACTGGAGACAACC-CTTCACTATACTGATGAGA--TTCCTAGGTGA--TCAGGAGAGGCCTGTGCCTGGGCAGCTACTTGGCAGGCTGGGAA----------------GCGGGGACAGAAGTG------TGCTTAGCAGCAGGCCTTACATCACCTGGCTGCTTTCCAGCCATCG---TCA----AGCCAACATGTTACACACCCTGTAGGTGTAAAGCCTA-GGTCCACT s canFam1.chr18 30351003 254 + 66173745 -------tgaggagctggggtcaac-acaggactgttggag------gagcttccc---ccataacGTTGGTGAGATCCCCGTGGGTGGTCTCACCGAAGTCCTGAAGGAGGACAGAACCAAGATTGACCAGCACTTGACCAGTACTCTGCACGGGGGTGGGGCAGGCAGCCTGGTGACCAGCAAGCCTTGCATCACCAGGCTGGTTTTGATCCAACAAAACCAA---ATCAAATGTATTTAACACCCTCTAGGTGCAAAGCCTTCGGCCGAAT a score=1025.0 s hg17.chr17_random 1895067 6 + 2618010 GCTATG s panTro1.chr19 81149625 6 + 82489036 CCTATG s canFam1.chr18 30351257 6 + 66173745 GCTGTG a score=100.0 s hg17.chr17_random 1895067 1 + 2618010 G s rn3.chr10 109959548 1 + 110733352 G a score=40182.0 s hg17.chr17_random 1895073 460 + 2618010 GGAGggctgggcacagtggctcatgcctgtaatcccagcactttgggaagccaaggctggagggtcagttgaagcgaggggtttaagcagcctgggcaacatagtgagactccntttgctttaaaaaaaTTTAAAACTggccgggtgcagtggctcacacctgtaatcccagcactttgggaggccgaggagggtggatcacgtgaggccaggagttcgagatcagtctggacaacatggnagaaaccccccgtctctgctaaaaatacaaaaattagccgnatgtgngcggcgtgcgcctgtaatcccagctactcaggaggctgaggcagtagaatctcttgaacccgggaggcggaggttgcagtgagccaagatcgcgcgactgcactccagccntgggcgacagagcaagactccatcttaaaaataataataataaaaaatttaaaaaataaAA s panTro1.chr19 81149631 456 + 82489036 GGAGggctgggcacagtggctcatgcctgtaatcccagcactttgggaagccaaggctggagggtcagttgaagcgaggggtttaagcagcctgggcaacatagtgagactcc-tttgctttaaaaaaaTTTAAAACTggccgggtgcagtggctcacacctgtaatcccagcactttgggaggccgaggagggtggatcacatgaggccaggagttcgagatcagtctgggcaaca-gggagaaaccccccgtctctgctaaaaatacaaaaattagccgggcgtg-gcggcgtgcgcctgtaatcccagctactcaggaggctgaggcagtagaatctcttgaacccgggaggcggaggttgcagtgagccgagatcacgcgactgcactccagcc-tgggcaacagagcaagactccatcttaaaaataataataaaaaaaaaTTTTAAAAATAAAA a score=984.0 s hg17.chr17_random 1895533 6 + 2618010 TAAAAA s panTro1.chr19 81150087 6 + 82489036 TAAAAA s canFam1.chr18 30351263 6 + 66173745 CAACAA a score=0.0 s hg17.chr17_random 1895539 21 + 2618010 GAGTAAAAGGAAAAATGCTGC a score=1492.0 s hg17.chr17_random 1895539 16 + 2618010 GAGTAAAAGGAAAAAT s panTro1.chr19 81150093 16 + 82489036 GAGTAAAAGGAAAAAT a score=1473.0 s hg17.chr17_random 1895555 5 + 2618010 GCTGC s panTro1.chr19 81150109 5 + 82489036 GCTGC s rn3.chr10 109959549 5 + 110733352 GCTGC a score=4989.0 s hg17.chr17_random 1895560 69 + 2618010 TGGAGAAGCGGCGCTGACGGAGGG-TCCCTG-CCTGGCGAAATTTCCTGGACCT-GCGTTGGTACCCAGGTG s panTro1.chr19 81150114 69 + 82489036 TGGAGAAGCGGCGCTGACGGAGGG-TCCCTG-CCTGGAGAAATTTCCTGGACCT-GCGTTGGTAGCCAGGTG s rn3.chr10 109959554 66 + 110733352 -----AAGACACACCGAATGAGAACTCCCTG-CTTGGCCGGGGTGTCTCAATATAACCTCGGTGCTCAGGGG s canFam1.chr18 30351269 61 + 66173745 ---TGGGGCACCGCCTAGGACAGACTCCCCGCCCTGACAAGGGTTTCCCAGCCA-GTCTCAGAGC------- a score=2179.0 s hg17.chr17_random 1895629 18 + 2618010 CACCCCCTGTCCCCTCCC s panTro1.chr19 81150183 18 + 82489036 CACCCCCTGCCCCCTCCC s canFam1.chr18 30351330 18 + 66173745 CTCCACCTGCTGGCGGCC a score=203.0 s hg17.chr17_random 1895629 18 + 2618010 CACCCCCTGTCCCCTCCC s canFam1.chr18 30351330 18 + 66173745 CTCCACCTGCTGGCGGCC a score=131915.0 s hg17.chr17_random 1895647 882 + 2618010 CTGCCCCCTGGGCCCCTCGCCTCGGGTACACCACCTCTCCAGTCACACACTGGAGTGGCCCTGGAGCCTCTAGCCAGGCCC-----GGGCCTGCAGACACCCTGAGGGGGGTCGGCTCCCAGCGTGGCTGCATTTCTAGGGACTCAGGGAAAGGTATG------GACAGTTGGAATTCCAGGTCACTTGGGAGGAGCCAG--GCCGTTTTTTCTGGCTTGTTTACGTGAAGCCTGGAGACGAAA-------CGTTGTACACTGGAGACAGG-------CTCTCCTCTGATGTGAAGATTGCCTTTTCTCATGTTGTGG-AAAGTTCTGTCTGCCCTCCCC-CCTCAGAGGATCAGATGAAAGCACGCTGGATGAAGCTGCCACCAACAGTGTGACGAGAAGGAACG-------------CCCTTTCCAGGAGTGACCGGGCCTCAGGCTAGAGACGCGGTGGGGGCAAGACCACCCGGTGAGCCTGTTTGGCGACCCCAAGCA---AGCCCCTGTGTCCCTCCTGCTGGAGGTGAGCTGGGAGCGTGCAGAG-CTTTTGGCTTTGGGGTTTCTATCTGGATCACCCGAGGGACTGGTGCCTGAAGCCTCGCCAGTCACAACAGATTTCCTTGAAAGGTATTTA-TGTGCCTTCTATTCTAATAAGGATGTGGGAA-----CCGTGTGTTCTACGCCATGATAGACACTCCCTGGAGCTCCTCACCCTTGA-----AACGTTCCATCAG------AAGCCGGCCGTCAGCAGTCGTGCCT--GCTCCACCGT-GGGCGAAGCGTGCTGTTCATGCAGCGTGACGTCAGAGCCAAACCT-GTCTTCATGGAGTTTTGTCCCTGATTNCTTCTTGGTCCA-TATGAACTTGCAAATTGACCTAGTTTGCATGACTCTA-----AGTTTCTGCCTTCTGGAGGA------CGAACTAGAACATCT s panTro1.chr19 81150201 878 + 82489036 CTGCCCCCTGGGCCCCTCGCCTCGGGTACACCACCTCTCCAGTCACACACTGGAGTGGCCCTGGAGCCTCTAGCCAGGCCC-----GGGCCTGCAGACACCCTGAGGGGGGTCGGCTCCCAGTGTGGCTGCATTTCTAGGGACTCAGGGAAAGGTATG------GACAGTTGGAATTCCAGGTCACTTGGGAGGAGCCAG--GCCATTTTTTCTGGCTTGTTTACGTGAAGCCTGGAGACGAAA-------CGTTGTACACTGGAGACAGG-------CTCTCCTCTGATGTGAAGATTGCCTTTTCTCATGTTGTGG-AAAGTTCTGTCTGCCCTCCCC-CCTCAGAGGATCAGATGAAAGCACGCTGGATGAAGCTGCCACCAACAGTGTGAC---AAGGAACG-------------CCCTTTCCAGGCGTGACCGGGCCTCAGGCTAGAGACGCGGTGGGGGCAAGACCACCCGGTGAGCCTGTTTGGCGACCCCAAGCA---AGCCCCTGTGTCCCTCCTGCTGGAGGTGAGCTGGGAGCGTGCAGAG-CTTTTGGCTTTGGGGTTTCTATCTGGATCACCCGAGGGACTGGTGCCTGAAGCCTCGCCAGTCACAACAGATTTCCTTGAAAGGTATTTA-TGTGCCTTCTATTCTAATAAGGATGTGGGAA-----CCGTGTGTTCTACGCCGTGATGGACACTCCCTGGAGCTCCTCACCCTTGA-----AACGTTCCATCAG------AAGCCGGCCATCAGCAGTCGTGCCT--GCTCCGCCGT-GGGCGAAGCGTGCTGTTCATGCAGCGTGACGTCAGAGCCAAACCT-GTCTTCATGGAGTTTTGTCCCTGATT-CTTCTTGGTCCA-TATGAACTTGCAAATTGACCTAGTTTGCATGACTTTA-----AGTTTCTGCCTTCTGGAGGA------CGAACTAGAACATCT s mm5.chr11 120224197 711 + 121648857 CTACTCCCTGAGCT----------GGAGTACCA------CAGAAAC---TTGAAGAGGCTCTGAGA--------------------GAACCTG--------CTGGGGATGGTTGTGTACC------TCTGCATCTCTCCGGC-----------------------ACAGCCCCAACTCCTGGTTGCTTGGGAGGAGTCAGATACCATGTCTTCTAACTTACCTACCTTAAGTAAGGAAACAGAAGGTCCTGCGCTGTAGCCTGGTGACAGAGCTCCTCCCCCCCTTAGATGTGCCGATTGTCTTTTCTCATGTTGTGGAAAAGTTGTGTCTGTACTCCCA-GCTCAGAGGATCAAATGAAAGT-CTTCAGATGAAGGTGCTACCAACAGAATGGCAGGAAAGACCAGAAGAGCAGCCCTCTCCTCCCATCAGTGAGTGGCCTCCA---CTGAGATAAGGTCTGGGAACCGTCAGCATGTGAGGGC-CTTGGCCATTTAGAGCA-----------------------CAGAGGT---------------------TCTTGAGTTTGGGGTTTCTGCGTGAGTC-----AGAGTCTAGACCCCAAAGTCTT-CTAGCCACTG-----TTCCTAGAAA-----CTG-TGT----------------------------------CATGTGTTCCTAGCT-----------------GAGCTCTCTACCTCCAATACTCAACGTTCAGCAAGTTCAACAAGCTGTCAATCACTTATGGTGAC----------------------------------------TGACATGAAAACAAAGCCT-GGAATTACATCCCTCTGTCTCCAAGT---CCCTGAACCAGTACAAGCTTAGAAAGTGA-CTAGTCTTTGAGGGTTAG-----AATTTCTACGTTTTGGAGGA------TGAAATAGAACATTT s rn3.chr10 109959620 702 + 110733352 CTGCTCCCTGAGCT----------TGAGTACCA------CAGAAAC---TTGAA--------------------CAGGCTCTGAGAGAACCTG--------TTTGGGATGGTTCTGTGCC------TCTGCATCTCCAGGGC------------------------CAGTGCTAACTCCTGTTTGCTTGGGAGGACTCAGATTCCACGTCCTCTAACTTATTTACCTTAAGAAAGGAGACTAAATGTTCTACACTGTAGCCTGGCAACAGAACCCCTCCCTCCCTTAGATGCACCGATTGTCTTTTCTCGTGTTGTGGAAAAGTCGTGTCTGTACTCCCCAGCTCAGAGGATCAAATGAAAAC-CTTCGGATAAAGGTGCCACCAACAGAATGGCAAGGAGAACCAGAAGAGCAGCCCTCTCCTCCCATCAGTGAGTGGCCTCCA---AAGAGACAAGGTCTGGGAACATTCAGCATGGGAGGCC-----------------------CCCGGGCATT--------TAGAG--------------CACAGAGTTTCTTGAGTTTGGGGTTTCTGTTTGAGCC-----AGATTCTAGCCCCCGAAGTCTT-CTAGCCACTG--------CTTGTAG-------------------------------------GAACTGTGCAGTGTGTTCCTAGCTGAGAT---CTCTACCTGGTGTACTC--------------AACTTTCAAC---------AAGCTGTCAATCACTTATGGTGAC----------------------------------------CGACATGAAAACAAAGCCT-GGATTTACATTCCTCTGTCCCCGATT---CCCTCCACCAATATGAGCTTATAACGTGA-CTCGTCTGTGAGGTTTAG-----AATTCCTACTTTTCAGAGCA------TGAACTAAAACATTT s canFam1.chr18 30351348 732 + 66173745 TGGCCCCGCGGG-----------------ACCCCCCTCCCAGCCCA----------------------------------------GGCCCTGCGGGAGCCCTGATACCCGCTGGTACCCAGTGTTCCTGCACTTC-GGGGCTCCGAGTATGAGTGTGGTGCCAGGTGATCTTAACTCCTGGTCACTTGGGAGGAGTCGG-TGTAGCTGCTGCTGGCTTGTTTAC--------AGGAGGCTGAA----------------------------------CTTTCCTTTGATGTGAAGATTGCCTAGTCTGGTGCTGTGG-AAAGTTCTGTCTGGCCTCCAA-----------------GAA----CCCTGAGTGAGGCCGCCAC---------------GGGTACAG-------------CATTTCCCGAGAGCGACCAGCT-------TTGGGCTCAACTCAGGCCAGTGCAAACCTGTA---------GGCAACCCCAGTGATGAAGCCCCTG--GCCCATCAGACTGAGGTGAGCCGAGAGCTTGGGCAT--CGGTGGCTTTGGGGTTTCCATGTGGATCTGAGAAGGGACCGGTGCCCAAAGCCCC-GCAGTCACCATAGACTCTCTGGAAAGTACTTTGCTGTGCTTTTTGTTCTGCTGAGGACACAGGAT---------GTCCTCTGAACCAGGG----CGCGGCCTGGGGC--------------------------GTCAG------AAGCCGGCTGGGAGC-ATCCAACCTGAGACCAACCATCTGGCAAAGTGGATCTTTCATGCAGC-CACAGGCAGGACCAAACCTAGTGTTTATCCAGCCTTGTCCCTGACA---------CCCA-AGTAAACCTGTGAAGTGACGTGGTTTGTGCGACGTTGCCGTTAGGCTCTGCCTTCTAGGGAACTGGAGCAGGCCGAAATATTT a score=485.0 s hg17.chr17_random 1896529 2 + 2618010 GA s panTro1.chr19 81151079 2 + 82489036 AA s rn3.chr10 109960322 1 + 110733352 -A s canFam1.chr18 30352080 2 + 66173745 AA a score=1621.0 s hg17.chr17_random 1896531 23 + 2618010 TGCACAAGGTTTACCATCNNANt s panTro1.chr19 81151081 23 + 82489036 TGCACAAGGTTTACCATCACACt s canFam1.chr18 30352082 23 + 66173745 CCCAAAAAGCTTACTTTGGAAAA a score=89019.0 s hg17.chr17_random 1896554 1066 + 2618010 ttntntattttttttnnnagacggagtctcgctccgtcgcccaggctggactgcagtggtgcgatctgggctcacggcaagcttcgcctcccgggttcangncattntcccnnctcagcctccngngtagctgggactacaggcgccngnccaccacgnccagctaa-ttttttgtattttnngnagnangacggggtttcnctgtgttagccaggatngtctctatctcctgaccncgtgatccgcccgcgtcggcctcccagagtgctgggattacaggcgtgagccaccgcgcccggccTACCGTCCAACTTTTAGAAGTCCAGTGAGGCCTggctgggctcagaagctcacgcctgtaatcccagcactttgggaggccaaggtagaaggatcacttgaagccaggagttgaagaccagcctgggcaacatagggagacccccttcccttcaaaaaatttaaaaattagccaggcatggtactgggtgcctatggtcccagctacttagaatgctgaggtgcaaaagattgcttgagcccaggagtttgaggctgcagtgagctacngtcncnccantgcaccccagcctgggcaacagagcaagaccctgtctcaaaanaaaaaaaaTGTNCNGTGAATGCANCCAGCAGTGCTCTGCAAAAGCACCCGGGAGACCCTGTTAGTAAAGTCAGCTGAggccaggcgcagtggctcangcctgtaatcccagtactctgggaggccaaggtgggtggatcaccngagatcaggagttcgagaccagcctggcnancatggtgaaaccccatctctactgaaaatacaaagattagccgggcatggtggtgcatgcttgtaatcgcagctactcaggaggctgaggcaggagaatcacctgagcccaggangcagaggnttgcagggagctgagatcgcagcgctg-actccagcctgggcaacagagtgagactatgtctc----aaaaaaaaaaaaggaaaaGTCAGCGCAGGTCGCACTGCAGTCTGGCAGGAGGGCCAGCCTAGGGCCAGAAGGGCCCTTCCCTCC s panTro1.chr19 81151104 1066 + 82489036 tt-tttaatttttttttgagacggagtctcgctccgtcgcccaggctggagtgcagtggcgcgatctgggctcacagcaagcttcgccttccgggttcacgccattctcccgcctcagcctccggagtagctgggactacaggcgcccg-ccaccacgcccagctaatttttttgtatttttagtag--agacggggtttcactgtgttagccaggatggtctctatctcctgaccccgtgatccgcccgcgtcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccTACCATCCAACTTTTAAAAGTCCAGTGAGGCCTggctgggctcagaagctcccacctgtaatcccagcactttgggaggctaaggtggaaggatcacttgaagccaggagttgaagaccagcctgggcaacatagggagacccccttcccttcaaaaaatttaaaaattagccaggcatggtactgggtgcctatggtcccagctacttagaatgctgaggtgcaaaagattgcttgagcccaggagtttgaggctgcagtgagctacagtcacaccactgcaccccagcctgggcaacagagcaagaccctgtctcaaaa-aaaaaaaaTGTCCAGTGAATGCAACCAGCAGTGCTCTGCAAAAACACCCGGGAGACCCTGTTAGTAAAGTCAGCTGAggccaggcgcagtggctcacgcctgtaatcccagtactctgggaggccaaggtgggtggatcacccgaggtcaggagttcgcgaccagcctggccaacatggtgaaaccccatctctactgaaaatacaaagattagccgggcatggtggtacatgcttgtaatcgcagctactcaggaggctgaggcaggagaatcacctgagcccaggaggcagagg-ttgcagggagctgagatcgcagcactgaactccagcctgggcaacagagtgagactctgtctcaaaaaaaaaaaaaaaaggaaaaGTCAGCGCAGGTCGCACTGCATTCTGGCAGGAGGGCCAGCCTAGGGCCAGAAGGGCCCTTCCCTCC a score=445.0 s hg17.chr17_random 1897620 3 + 2618010 CTG s panTro1.chr19 81152170 3 + 82489036 CTG s canFam1.chr18 30352214 3 + 66173745 CTT a score=1594.0 s hg17.chr17_random 1897623 31 + 2618010 AGNGTCAGAGGCCC----CCCGGGGTGTGGT-----------------ACAT s panTro1.chr19 81152173 30 + 82489036 AG-GTCAAAGGACC----CCTGGGGTGTAAT-----------------ACAT s rn3.chr10 109961770 52 + 110733352 AGGGACAGGTACCCAGTGCCTGGGGGTTGTTAGGTGTTTGGTAATCTAACAT s canFam1.chr18 30352217 31 + 66173745 GGTGGCCGAGGACC----TCGAGGGTCTGGT-----------------GCAC a score=0.0 s hg17.chr17_random 1897654 24 + 2618010 AGACCCAGCAATCACTGTTTTAGG a score=-3295.0 s hg17.chr17_random 1897654 2 + 2618010 AG-------------------------------------------- s panTro1.chr19 81152203 2 + 82489036 AT-------------------------------------------- s rn3.chr10 109961822 46 + 110733352 AGGCTTGCAGGATGGTCTGTCTACAATTAAACTTCCAAGCCAGAAG a score=947.0 s hg17.chr17_random 1897656 22 + 2618010 ACCC-----AGCAA------------------------TCACTGTTTTAGG s panTro1.chr19 81152205 22 + 82489036 GCCC-----AACAA------------------------TCTCTGTTTTAGG s mm5.chr11 120225931 46 + 121648857 ATCC-----AGCAAAGCCAGTTTGAAGATTAGGGCAGTACTCTCTTTTAAG s rn3.chr10 109961868 27 + 110733352 ACCCCTTAGGGCAG------------------------TACTTTTTTGAAG a score=75625.0 s hg17.chr17_random 1897678 404 + 2618010 CTCCAGGCCGGTGGCTTCCTGGCACCT-------------------------GGAGAGACAGAGGG----TTGGGAAGTCCCAGGCTGCTAAGCCCTAACCNACCT-CCTCCCAGAGCCTTCAAAGTCTCCCCACTAATCCAGCAGCCCAGTCAGAGAGGTTTTGGACACTGCCCCACCACCTCCCAGCCACAGCCGAGCCCAGGAATGTGCTCATCAGCTGCCTCTGCAAAACGGGAAAGGTATCAGTGACTCCCTCCC-CTTT--CCAGAGCACATGACACCA-----GT-GCTGCGGGCAGCTGTGCCATGTCCCAACGNTTCTCTCCAGAGGGCCGGCTCCCCGCACAGCTG------------------GTCCACAGG------GTCACTGCACCCCATCCCNACGGCCAGGGAGCACAGGCACA-----AATA-CAGCCCACCCCTTTAGCTGTGACTCAGG-----------ACAGC--- s panTro1.chr19 81152227 400 + 82489036 CTTCAGGCCGGTGGCTTCCTGGCATCT-------------------------GGAAACACAAAAGA----TTGGGAAATCCCAAGTTGCTATCCCCTAACCA--CT-CCCCCCAAAACCTTAAAAGTCTCCCCACTAATCCAGCAGCCCAGTCAGAGAAGTTTTGGAGAGTGCACCACCACCTCCCAGCCACAACAGAGCCCAGGAATGTGCTCATCAACTGCCTCTGCAAAACGGGAAAGGTATCAGTGACTCCCTCCC-CTTT--CCAGAGCACATGACACCAAAGAGG-------AGGCAGCTGCGCCGTGTCCCAACG-TTCTCTCCAGAGGGCCGGCTCCCCGCACAGCTG------------------GTCCACAGGAAAAGAG------CACCCCATCCC-ACGGCCAGGGAGCACAGGCACATTAGGA-----GGCCCACCCCTTTAGCTGTGACTCGGG-----------ACAGC--- s mm5.chr11 120225977 386 + 121648857 TCCCAGGCCAATGGCTTTTGGCTATCT-------------------------GTGGAGGGGATAGGTGGTTTGGGAAATTCCAG---------TCTTCACCA--CTGCCCCACTGATCCTTTGA--TTACCTTACTAATCCACTAGCCCAACCACAGAGGTTTTAGAAACCACCCTGTAGCTGCCCTG-CACAGCCTGGCTCTGGAATGCTCTCATCAGCTGCCTCTGCGAAAGGGGAAAGATATCTGTGAGTCACTCTG-CTCT--CCGGAGCGCGTGACA--------G-------TGGC-----CGCCTGGTCTGAAGCTTTCTTATCCAGAGACCAAATCCTTGCACAACTGGGCAGTTGTTCTGGCGCTGTCTCTAGGACAGATG------TACAGCAAACCTTTGAACCGGGATTGGAA----------AATATCTGCTCACAGCCCT-GCTGTTTTTT---------------------- s rn3.chr10 109961895 368 + 110733352 TTCCAGGCCAATGGCTTTTGGCTACCT-------------------------GTGGAGGGGATGGGTGGGTTGGGAAATTCCAG---------TCTTCCCTC--ATGTTCCACAGGTCCTTCGG--TTGCCTTACT--------GGCCCAACCACAGAGGTTTTAGACACTACCCTGTAGTTGCCCTG-CACAGCCTGGCCCTGGAATGCTCTCATCAGCTGCCTCTGCAAAAGGGGAAAGATATCTGTGAGTCACTCCT-GTCCGGCCGGAGCGCGTGACA--------G-------CGGC-----TGCCTGGTCTGAGGCTTTCTTATCCAGAGACCGAATCTCTACACAGCTG------------------GGCAGTAGTTCTGGAA------------------CTGTCTCTAGGGCAGGTGTACA-----A-------TCTACCTTATTACCTGTGACTGGAAACTATCTGCTTACAGC--- s canFam1.chr18 30352248 405 + 66173745 TTCGGAGGCAGCAGCCTCCAACCACCTGCAGAGAGCAGAAGAGAAGGGAGGAGGAGAGGAAGAGGGAGCTTTGGGATGTCCCGGGCTGCTAAGCCTTGACTG--A--CCACCCTGAGCTGCAAA--GTTGCCTGCTAATCCACCAGCCCCGCC----AGGTTTTGGACTCCACCCCACAGCCTCCCAG-CCAATCCAGGCCCTGGAATGTGCTAATCAGCTGCCTCTGCAAAAGAGGAAAGGTATGGGTGACTCAGTCCCTCTCC--CAGGAGCACATGACA--------GCAGCTCTGGGCAGCGGCACCGGGTCCCAG---CTCTGTGCGCAGGGCCTGG--CCGGCACCGCTGG-----------------GTGCTCAGG------G------TCACCCATGC--CCATCCATGGGGCGGGAGCGCA-----G---------GATCCTGATGGCCTTGCTCGGGG-----------CGGGCTTC a score=6538.0 s hg17.chr17_random 1898082 175 + 2618010 CTCCCTCAGAGACCCTGCAAGG--AGCCACAGCCCTCGGGCCTCTGCCCA------CATCCT---------------------------CCCACGGC-ACCTCCAGA--TGCCGTTGCCCACTTTTCCGTGAGTACGCGGCTCACTGTGTC-GCAGGACCCAGGCATGGCACACAAACCCTGCTGAGGCCCTGGAGCTGAACTAGCCNAGAAAC s mm5.chr11 120226363 173 + 121648857 CTCCCCTGGAAGCACTGTCATGTTGGCCACA------GAGCCTTGACTCA------CATTTTGG------GCACAGAATTGATATCTTCCCCACAACAAACTCCAAAGTTACTG-TACCCACTTTGAGGTGA--ATGTGGTCCATTGTGTCGGCAGGTCCC----------CTCAGAAGCTG--------CAGGAGCTGACACAGCT--GGAAC s rn3.chr10 109962275 175 + 110733352 CTCCCCTGGAAGCACTATCATGTTGGCCACA------GAGCCTTGACTTA------CATTTTGG------GGACAGAATTGATATCTTCCCCACAACAAACTCCAAAGTGACTG-TACCCACTTTAAGATGA--CCATGATTCATTGTGTCGGCAGGTCCC---------CTTCAGAAGCTT--------CTGGAGCCGAAGTAGCT-GGAAAC s canFam1.chr18 30352653 189 + 66173745 CTCCCCCGGAGGTTCTGCTCCCCCCCCCCCCACCCGTGACCCCTGGGGGAACGGCTCAGTCTGGAGGGTAGGGC-----TACCATCCTCTCC--------CCCAGAAGTGGCCC-AGCTCACCTTTCTCTGCCTGCGTGTCGCCTTCCATCAGCAGGACAGAGGCCCAGCGCGCCTAGGCC---------CCAGAGC-GCAGGAGCT-GGAGAC a score=5963.0 s hg17.chr17_random 1898257 280 + 2618010 CAGCCCCAGCACGGGCTGTCTCCAA-GACCCACAGAGCTGGGGGCCGGGGCAGACGGCAGCACCCAGACTGCCGAGCTGGTGTG---AGCCGTGTGGGGCCAAGGACATGTGGGCAAACCNGGGCTGG------CTGGTGCTGGCGACGTGT-TGACACA-GGTCCTCGCGGCATGCTGGCCGGATACT-CCACAGCCTGGAGCAGAGGCAGGAGGAGCCGGAGCGG---CCGAGTTTGTGAGGGCCTGTGGGGCCGGCAAGGGAGGTAGCGGGGAGAAC----------GGGAGAACCGCACCCC s panTro1.chr19 81152801 277 + 82489036 CAGCCCCAGCACGGGCTGTCTCCAAAGACCCACAGAGCTGGGGGCCAGGGCAGACGGCAGCACCCAGACTGCCGAGCTGGTGTG---AGCCGTGTGGGGCCAAGGACATGTGGGCAAACC-GGGCTGG------CTGGTGCTGGCGACGTGT-TGACACA-GGTCCTCGCGGCATGCTGGCCGGATACT-CCACAGCCTGGAGCGGAGGCAGGAG---CCGGAGCGG---CCGAGTTTGTGAGGGCCTGTGGGGCCGGCAAGGGAGGTAGCGGGGAGAAC----------GGGAGAACCGCACCCC s mm5.chr11 120226537 238 + 121648857 TGGCCC---TATAGCCAGTCACCAA-GAGCCAATGAA--GGCAGTATGAGTGGACAGCTG-ACACAG-CTGCTGAGTCAGAATGTACAGCCTTGGAGTGACAGATACCT------------GGGCCAT------CTGGCACTGCCTGAGTTTGTGACAGAGGGTCCTCTTCCTCTGCTCGTTG--TGAT-C---------------AGATAGGAGCATCC----------CTGGGCTAGTGTGAGCTTTTATGGCAGGACAAGGTAACCATGGGGGGA--------------GATGACCATACCCC s rn3.chr10 109962450 248 + 110733352 CAGCCC---TATAGCAAGTCACGGA-GAGCCGGTGGA--GGCAGTGTGAGTGAACAGCTG-ACTCAA-ATGTTGAGTCAGAATGTACATCACTGAAATGACA-------------------GAGC--------------ACTGCCTGAGTTGGTGACGGAGGGTCCTCTTCCTCTGCTGTGTG--TGCTGCCACAGCCAAATC---AGATGGGAGCATCC----------CTAAGCTTGTGTGAGTTTTTATGGTAGGACAAGGTGACCATGAAGGTCATCACGACCCAAGAGACAACCATATT-- s canFam1.chr18 30352842 171 + 66173745 CAGCCCCAGGACAGGCCGC--CCGA-G----------------------------------GCCCGGGCTGCTGCGCCGC-------TGCTGCGCAGGGTCCCGCTCACCTGGGCTGA---GGTCTGTGGAGGCCTGGGGCAGGC--------TGACACA----------------------G-------C---------------AGGGAGGG----CCGGGGCAGGACACAGGCT--------------------------GCGACAGTGAACAGAGT------ACGCCGGAGAGCCATGTCCA a score=21321.0 s hg17.chr17_random 1898537 501 + 2618010 CGGCGAGGCCT--GGTCTGGCTTGAGAGCCGTCTCTGGCTCCAGCAGCTGCAGCC---AGCCCGCNAANGCTCGGGAACTGGGAGGACACCCGGGAANTCTCGGCAGTGCG-GAAGCTCCTACTCTAG-----GAAGCACATCAGGATGTGAAGTTGGCGGGGCTCACAGAGT----CACAGGCAGGGCTCNCTCAAGGC---------------------AGCCTGGTGAGGGTCGTTTGTTC-CATCCGAACTTCT-------GAGGGCCGAGCAGCCTCCCT------------------AGAGCTGCAGCTCCACCCCCNACNTNCCCACCTGCCACCTGCACCCTTGGGCTCCTTCCTCCTGCCTCACCGCCCTCTGAGACCACCATGAGCCCTGCTGGATCCTCAGGGCCT------CTGCCGTTGCCCTC-AGGGGGACCCACAGACACCACAGAGCTCCTGTTGCCTCCCCTGCAGAAAAGCAGCAAATCCAGGCTCAGCAGAGCCAT-CGCCCAGCC--CTGCACAC-AGGCC-GCGGCTTGCCGTCTGCAGAAAAATTGACTTTC s panTro1.chr19 81153078 476 + 82489036 CGGCGAGGCCT--GGTCTGGCTTGAGAGCCGTCTCTGGCTCCAGCAGCTGCAGCC---AGCCCGCAA--GCTCGGGAACTGGGA---CACCCGGGAA-TCTCGGCAGTGCA-GAAGCTCCTACTCTAG-----GAAGCACATCAGGATGTGAAGTTGGCGGGGCTCACAGAGT----CACAGGCAGGGCTC-CTCAAGGC---------------------AGCCTGGTGAGGGTCGACTGTTC-CGTCCGACCTTCT-------GAGGGCCGAGCAGCCTCCCT------------------AGAGCTGCAGCTCCACCCCC----------------ACCTGCACCCTTGGGCTCCTTCCTCCTGCCTCACTGCCCTC--AGACCACCATGAGCCCTGCTGGATCCTCAGGGCCT------CTGCCGTTGCCCTC-AGGGGGACCCACAGACACCACAGAGCTCCTGTTGCCTCCCCTGCAGAAAAGCAGCAAATCCAGGCTCAGCAGAGCCAT-CGCCCCGCC--CTGCACAC-AGGCC-GCGGCTTGCTGTCTGCAGAAAAATTGACTTTC s rn3.chr10 109962698 387 + 110733352 TGGAAGGTCCTTCAGCCTACCCTAACAGTTGTGTCTAG-TGCAATGGTTGCAAGC---AG-----AA--------------GGG---CACCTAG----CCTTGATGATGGGAGGATGTTCTGCTGTGGATTGTGGATGGCTTCAGAAC----ACTTGTGTGCACGCACACAGGTAAACACAGGCAGGGCAC-CCCGAGA----------------------ACACTGGTAAGGCT-GTGGGCTC-TGTCTGACCT-----------AAGGCA-------------------------------------------------------------------ACCTGAAACATTA------------CTG--TCAGGACCCAG--AGTTCACCCTGAACCCTGT--GACCCTAAGACTCTCAGATACTGCTG-TGCTCTC-AACAGTACCCACA--------------CCAGTGG-----------GGAGTGTGAGAAACCCAGCCC---CAGGGCCAT-CACTTTGCCTACTGCACATGAGATG-GTAGCTTTGAAACTG-GGAAACATTAACTGAT s canFam1.chr18 30353013 458 + 66173745 TGGCACGTCCTACGGT-----------GGAGTCTCCAG-CCAGGCACCGGCACCTCGAAGCCCCCCC-------GGCACACGGG---CATCAGCG---CCCTGGGCGGGCA-GG-------GCTGGAG------------------------ATGTTGGGGGACTCGTGCGGT----GACAGGCAGGGCTCTGTAGAGACCTAGCTACGTGCGCTGTCCTTGACCCAAGGTGGACTGTATGTCCACATCCGTCCCCCTCCCAGGAGATCACCAGGTGGCCCTCCTGCCCCTGTAGACAAGCTGAGAGCGGCAGAT------------------------ACCAAGACCCGGGGGGTGCTG----CTG--TCAGGGACAGA--TGGCTACCCAAGGCCCGCCAGCCCCGTGTGGGGCT------CCTCTCCTGCTCTCGAGGGGGACCCACAGGTGCGGCTGGGCAGCAGGGCCC---------GAGGAGT----CAGTCGGGCTCACAAGGCCCATGTGCCCAGGA--CTGCAGCT-AGGCCGGTGGCTT--CGTCTGCAGGAAAACCAATTCCG a score=91.0 s hg17.chr17_random 1899038 1 + 2618010 a s canFam1.chr18 30353471 1 + 66173745 A a score=23936.0 s hg17.chr17_random 1899038 289 + 2618010 agccgggcgcggtggctcacgcctataatcccagcactttgggaggccgacgcgggcaaatcacgaggtcagccagcagatcctggctaacacagtgaaaccccatctctactaaaagtacaaaaaattagccgggcgtggtggcggatgtctgtaatcccagctactcaggagngctcangngcaggagaatcacttgaacccngggaggcggaggttgcagtgagccaagacagcaccattgcactccagcctgggccacagagcaaganctccgtctcaaaaaaaa s panTro1.chr19 81153554 284 + 82489036 agcctggcgcggtggctcatgcctataatcccagcactttgggaggccgaggtgggcagatcatgaggtcagccagcagatcctggctaacacggtgaaaccccgtctctactaaaagtacaaaaaattagccgggcgtggtggcggatgtctgtaatcccagctactcaggag-gctcagg--caggagaatcacttgaacc-agggaggcggaggttgcagtgagccaagacagcaccattgcactccagcctgggccacagagcaaga-ctccgtctcaaaaaaaa a score=5592.0 s hg17.chr17_random 1899327 60 + 2618010 TCGAGTGTATGTGTTTTTTCTGCATGTGAAGCACAGGAGTGCTGAGG---TTAAGCCAAATTN- s panTro1.chr19 81153838 59 + 82489036 TCGAGTGTATGTGTTTTTTCTGCATGTGAAGCACAGGAGTGCTGAGG---TTAAGCCAAATT-- s rn3.chr10 109963085 56 + 110733352 TCGAG---ACCTAGTTTCTCTGTA---GGAAC-TAAGAAAGTTGAGGCTCTTGAGTCAAATT-T a score=21920.0 s hg17.chr17_random 1899387 236 + 2618010 ACAACTTAAAGACCAGGAGATCCttatttttagagacagctctgtcacccagctggagtgcagtggcgcgatctccgctcactgcagtgttgacctcctgggatcaagtgatcctcctgcctncagcctcccgagtagctgggactgtaggtgcaaaccatgcccagctaatttctaatttttcctagagacggggtctccccgtgttgcccCAGCACTGGGATTCCAGGCGCGCG s panTro1.chr19 81153897 235 + 82489036 ACAACTTCAAGACCAGGAGATCCTTAtttttagagacagctctgtcacccagctggagtgcagtggcgcgatctccgctcactgcagtgttgacctcctgggatcaagtgatcctcctgcct-cagcctcccgagtagctgggactgtaggtgcaaaccatgcccagctaatttctaatttttcctagagacggggtctccccgtgttgcccCAGCACTGGGATTCCAGGCGCGCG a score=22213.0 s hg17.chr17_random 1899623 369 + 2618010 TCCCTGCGCCCAGCCCTGCCCTTTATCGTGTGAAGGGTTAGTGAT-AAGCAGGGC----CCCCTGTTCC-------TCTCAC-CCATCC-TTGAAGC-CTGAG-TCCACCTGAT----TTCTCG-TC--ACTCCAC---GGCGGGGA-------TGGGAGGGAATGACCAG---------GAGTCT--GAGCATCACATGGGGCTGGGTGGCTCCACNCCGTGTCCACATCCNAGGGTCCAGAATCA----CAGAAGCCCCATCAGAGTCCAGGTAA-----------AGCAGCCTACAGGNCAGGGAAGGCATCCTCCCCNGGGAANTCGCAAGCCTGCACAGC--TCTGCTGGGGAGACTGGGGCCTGTTTCTGCATCTGCACCTCGTCCCAGGGGCGAGGCCTCTCAGCACCAGTAACCCCACTAAG s panTro1.chr19 81154132 375 + 82489036 TCCCTGCGCCCAGCCCGGCCCGTTATCGTGTGAAGGGTTAGTGAT-AAGCAGGGC----CCCC----CCGCTTCTCTCTCACACCTTCCGTTGAAGCTCTGAGGTCCAC--GATGATGTTCTCGCTC--ACTCCAC---GGCAGGGA-------TGGGAGGGAATGACCAG---------GAGTCT--GAGCATCACGTGGGGCTGGGTGGCTCCACCCCGTGTCCACATCCG-GGGTCCAGAATCA----CAGAAGCCCCATCAGAGTCCAGGTAA-----------AGCAGCCTACAGG-CAAGGAAGGCATCCTCCCCGGG--AATCGCAAGCCTGCACAGC--TCTGCTGGGGAGACTGGGGCCTGTTTCTGCATCTGCACCTCGTCCCAGGGGCGAGGCCTCTCAGCACCAGTAACCCCACTAAG s canFam1.chr18 30353944 332 + 66173745 TTTCAACCCACAATCCTGCT--------TGTGAAGGCTTCTTGGTGAAGCACGGCAATGCCCT----CG-------ACTCAC-CCACCC--TGGAGT-GTGTGCCCCGT---------TTCTTG-TTGGACCCCACGATGGCAGGGAGACTGCTCTGGTGCAACAGACCAGGGCCACCTTGGGTCCTGGAGCAGCAC--GGAGCAGGACA-------CACGTG---GCAGCCGGGGGTCCAAGGACAGTGCCAGGACACCCACCC-ACCCCACCTGACGCGGCCCCGCAGCAGCCCCCAGGGCAGGCAATGCCCTCCACTTGGT----------GACGACACAGCAAACTACCCGTGACACT--------------CATGTG----------------------------GCTCCCGTAAGCATGATGCG a score=19452.0 s hg17.chr17_random 1899992 80 + 2618010 GCCTGGCAGATGGCC----------TTGGCGTCCGCATTCCAGCCCAGCTCTCCGGGCTTGGTGAGATCATAAACCCGAGGCAAGGACAG s panTro1.chr19 81154507 80 + 82489036 GCCTGGCAGATGGCC----------TTGGCGTCCGCATTCCAGCCCAGCTCTCCGGGCTTGGTGAGATCACAAACCCGAGGCAAGGACAG s mm5.chr11 120231346 84 + 121648857 GCATGACAGATGCCCGCTATCCCTTTTGGTGGCAGAATTTCAGCTCAGCTCCCTTAGCTC------AAAATAAAGCAGCAGTGACAATGG s rn3.chr10 109964638 87 + 110733352 GCATGACAGATGCCCACTATCCATTTTGGTGGCAGAATTTCAGCTCAGCTCCCTTGGCTCAGAGA---TACAAAGCAGAGGTGACAATGG s canFam1.chr18 30354276 66 + 66173745 -ACCAGGAGAGGCCC--------------------AACCCAAGCCCATGCCCCGTGGCCTGGAGAGTTCCTAAGATAGAGACAAG---AG a score=342128.0 s hg17.chr17_random 1900072 956 + 2618010 GTGGTAAAATTTCAACTTTATTTGGCCAATGTGTTCAATTCGATTGTGA---AATA---GAAATGCCTGAAGAACTGTCAGCGTCTGATTCAGCTCCAGCAT-----------CCTTGGCCA-------CCTCCCCACCCGGGAGTCAAGGGTCGTGGTTC---TGCCTTGAACAGG----------CCACAGGCCGTGCTGT-------AGAGAGGCCAGTGGTCAC-----AATGAGCCCACGACAGGAGG-------AGGAGCCCTG-GCTTGAGGGAAGGGGAAG--GCCCAGGCCTGTGCCGGGCCCCAGGGCTGGCAGCCAC-CAGCNTCCTCTT--------------CCAG-GCAT-----GGGG-----GACAC-----CCTGACAGGATCCGGAAGTCTCCA-TTTACCC---------AAAAATGCAAGAGCCATGATCAGTCATGGCGACACTGCAG-GCGGTAC----TGAGTGACCA--------------TG--TCCAGTCCGGCTCCGTC-CCT-CCCACACGGGGGA-CAAGCTTCTCCGAGGAGGCCTGGCCAAGGTGGAACAAATACCCTGAT--GTCGAAAAATGTCTAAAA--------ATCCCACAGACGGAATTTT---CAAAAAGAGGAGANAACCTCCC--GCGGGAGGGA------GGCAGCGAGA------CTCCGAA------------------CACGNGTAGC--------------------------------AAGCACTCTGGACAGA-CTCATGTATGAAAAAGTACATCATGGTTTCAGGAAACAAGC--CCCACCAGGGTGGGCTG----CCTGGAGATGGATCCCTTTCCAAAAACCGAAAAGCA--GAAGGAAGAGACGGGGGTGAACGGACG-GTGTGTANGGGGTGAGGTGTCACTTC-AGAGAGGTTCCCTGGGNTTTCCGG-CGACGC-CCTCC-TTCAAGCGA-GG--CCGCAGGCTTCGGAGGCGTGCGCTGCTGCTGGGTGTGCAGCCCCCGAGGGGTCTCGGC---AGCGCCCGG------GTNCTGGC-TTTGCGT-------------------ATTACAGTTCATCTTTCACAGCTTTCTG------ATCATCGTCTTCCTCCATGTCTGGCTCCTCTGCTTCTTCCAGGTCCTCGAGATCCTG-------GGATACAGGAAAA-----GGG s panTro1.chr19 81154587 960 + 82489036 GTGGTAAAATTTCAACTTTATTTGGCCAATGTGTTCAATTCGATTATGA---AATA---GAAATGCCTGAAGAACTGTCAGCGTCTGATGCAGCTCCAGCAT-----------CCTTGGCCA-------CCTCCCCACCCGGGAGTCAAGGGTCCTGGTTC---TGCCTCGAACAGG----------CCACAGGCCATGCTGT-------AGAGAGGCCAGTGGTCAC-----AATGAGCCCACGACAGGAGG-------AGGAGCCCTG-GCTTGAGGGAAGGGGAAG--GCCCAGGCCTGTGCTGGGCCCCAGGGCTGGCAGCCAC-CAGC-TCCTCTT--------------CCAG-GCAT-----GGGG----TGACAC-----CCTGACAGGATCTGAAAGTCTCCA-TTTACCC--------AAAAAATGCAAGAGCCATGATCAGTCATGGCGACACTGCAGAGCGGTAC----TGAGTGACCA--------------TG--TCCAGTCCGGCTCCGTC-CCT-CCCACACAGGGGA-CAAGCTTCTCCGAGGAGGCCTGGCCAAGGTGGAACAAATACCCTGAT--GTCGAAAAATGTCTAAAA--------ATCCCACAAACGGAATTTT---CAAAAAGAGGAGA-AACCTCCC--GCGGGAGGGA------GGCAGCGAGA------CTCCGAA------------------CAC-TCTAGC--------------------------------AAGCACTCTGGACAGA-CCCATGTATGAAAAAGTACATCATGGTTTCAGGAAACAAGC--CCCACCAGGGTGGGCTG----CCTGGAGATGGATCCCTTTCCAAAAACCGAAAAGCA--GAAGGAAGAGACGGGGGTGAACGGACG-GTGTGTA-GGGGTGAGGTGTCACTTC-AGAGAGGTTCCCTGGG-TTTCCGG-CGACGC-CCTCC-TTCAAGCGAGGG--CCGCAGGCTTCGGAGGCGTGCGCTGCTGCTGGGTGTGCAGCCCCCGAGGGGTCTCGGC---GGCGCCCGG------GT-CTGGCTTTTGCGT-------------------ATTACAGTTCGTCTTTCACAGCTTTCTG------ATCATCATCTTCCTCCATGTCTGGCTCCTCTGCTTCTTCCAGGTCCTCGAGATCCTG-------GGATACAGGAAAAGGGGGGGG s mm5.chr11 120231430 966 + 121648857 GTAGTAAAATTTCAACTTTATTTAGCCAATGTGTTCAATTCCAATATTAT--GGTA---GAAATGCCTGAAGAATGG---GCATTTCATTCAGCCCCAGTGT-----------CCTTGGCTG-------ACTCCCAATCTGGGAATCAAGGGTCCCAGTTC---TGCCTCACACAGG----------CCACAGGCCATGCTGG------AAAAGAATCCAGCAGCCACAGAGTAATGTGCCCATAGCCGGCTG----GTCGGTAGTCCTG-GCTTGAGGAGAGTGAGAGCTGTCCAGACCTGGCCTGAGCCT---GGCAGCAAGCCACACTGT-CTCTTTT--------------CCAC-ACAC-----GGGGATGGGGACCCACCCTCTTGACAGGATGCATAGATCCCCAGGTTAAAT--------GCAAACTACAA-AGCCATG--CTACCATGGCAACACTAGGACAAGGTGG----AGAGTGACCA-------------------CAGACCCAGAGCCACA-CTT-CCTACCCAGGGCAGGAAGAAGGCTCAGGGAGGTCT-GCCATGGTGAAACAAGTAGCTGGAC--ATGAAGACATGTCTAAAAGATGAAATGCCTCACAGATGAAATGCG---AAGTGGTAGCATA-AACCTCTCTAACAGGAAAGA--CATTACCAGTGTGAGGAGATCCCCAAA------------------CAT-TTTAGC--------------------------------AAGCACATGGGACAAATTCCACATACAAAAAAGTACACCACCAATTAAAACAAAAGGTAGCCCTTCAAGAGGGGCTGA---CCTGGACAGAGATCCCTTTCC-AAAATTGAAAAGCA---AAAGAAGAGACAGGTCTAAGTGTAC--GTGTGTC--AGATGA-GTGTGGCTTC-AGAAAGATTCCCTGGG--TTCTGA-TGGCGCTCCCTC-CTGGGGTGA-GG--CT-CAGGCTCCGGAGATGTG---GGCTGCTGGGAGCGTGGCCCACCGAGGTTTTGGGTTCAGGCGCCCAG------AT-CTGGCTTCTGC---------------------ACTACAGTTCATCCTTCACAGCTTTCTG------ATCGTCGTCTTCCTCCATGTCTGGCTCTAAAGCTTCTTCTAGG---TCGAGGTCCTG-------G-----------------ATG s rn3.chr10 109964725 968 + 110733352 GTAGTAAAATTTCAACTTTATTTAGCCAATGTGTTCAATTCCAACATTATGGTTTA---GAAATGCCTTGAGAATGG---GCATTTCATTCAGCCCCAGTGT-----------CCTTAGCTG-------ACTCCCAGTCTGGGAATCAAGGGTCCCGGTTC---TGCCTCACACAGG----------CCACATGCCATGCTGG------AAGAGGATCCAGCAGCCAG--AGTAATGTGCCCACAGCCGGCCGGCTGGTCGGTAGTTCTG-GCTTAAGAAGAGTGAGAGCTGTCCAGGCCTGGCCTGAGCCT---GGCAGCAAGCCACACTGT-CTCTTTT--------------CCAC-ACGT-----GGGG------ACCCACCC-TCTGACAGGATGCAGAAATCCCCAGGTTAAAT--------GCAAACTACAAAAGCCATG--CTGTCATGGCAACACTAGTACAAGGTGG----AGAGAGAGAG--------------AGCATACGACCCAGAACCATCGCCT-CCTGCGCAGGGCAGGAAGGGGTCTCAGGGAGGTCTG--CGTGGTGGAACAAGTACCTCGAC--ATGGAGACATGTCAGGAAGATGAAACATCTCACAGACGAAATCTG---AAGTGATAGCATA-AACCTCTCTAACAGGAAAGA--CATTACCAGTGTGA---AATCCCCAAA------------------TAT-GGTAGC--------------------------------AAGCACTTGGGACAAAATCCACGTACAAAAAAGTACACCACCAATTAAAACAAAACGTAGCCCTTCAAGATGGGCTGG---CCTGGACAGAGATCCCTTTCC-AAAATTGAAAAGCAAAAAAAGAAGAGACAGGTTTAAGTGTAC--GTGTGTC--AGATGA-GTGTGGCTTC-AGAAAGATTCCCTGGG--TTCTGA-TGGCGCTCCCTC-CTGGGGTGA-GG--CT-CAGGCTCCGGAGATGTG---GGCTGCTGGG-ACATGGCCCACCGAGGTTTTGGGTTCAGGCGCCCAG------AT-CTGGCTTCTGC---------------------ACTACAGTTCATCCTTCACGGCTTTCTG------ATCGTCGTCTTCTTCCATATCTGGCTCTAAAGCTTCTTCTAGG---TCGAGGTCCTG-------G-----------------ATG s canFam1.chr18 30354342 949 + 66173745 GTAGTAAAATTTCAACTTTATTTGGCCAATGTGTTCAATTCTGCTATCGT--GGTA---GAAATGGCTGAAGAACGGCCTGCACGTGGTTCGGCTCAAGCAC-----------CCTCGGCCG-------TTTCCCAGCCTGGAAATGGAGGGTTCTGGTTC---TGCCTGGGGCAGG----------CCTCAGGCTACCCTGG-----------GAGTCAGAG--CAC-----------------------CG-------GGGAGCCCAG-CTTGGGGGGGAAGGGGTGCTGCCCGGGCCCAT-CCGGGCTC---AGCCAGCACCCAC------CGCCCCT--------------CCAG-TCGTTTCTAGAAG----GCCCCC-----CGAGACAGAGATCCAAAGTCTCCA-TTTAAGC--------AAACAATGTGAGACCCATGCTCAGTCACGGCAACACCGGCACCAGGTGG-----GAGGGACCC---------------G--TCCAGCCCGGCCCAGCC-CCTCCCCACACAGGGGA-CAGGAGTCTCCAGGGAGGCCCGGCCAGAGTGGAACAGACACCCTGAC--GTCCAAAAATGTCTCAAA--------ATCCCACAAATGGAATTTTTTAAAGTGAGAGTATA-AACCTA----ACAGGAAGGAGGCTTCACGGGCATGA---GATCCCAAGA------------------CAT-TTTAAC--------------------------------GAGCACTTTGGACAAA-ACCATGTACGAAAAAGTACATCACAATTTAAAAAAAAACGG--CCCATCAAGATGGGCTGG---CCTGGAGATAAATCCCTTTCCAAAAATTGAAAAGCA--GAAGGAAGAGACGGGCCTAAGTTTACACGTATGTT-AGGATGAAGTGTGGCTTC-AGAAAAGTTCCCTGCA-TTTCCGATCGGTGTTCCCTCGTCCCGGTGA-GGGTCCGCGGGCTTCCAGAGGCCG---TGCTGCTGGACGTGCAGCC--GTGGGGGTCGTGTCTGGGGTGCCCAG------GT-CTGCACTCTGC---------------------CTCACAGCTCATCTCTCACAGTTTTCTG------ATCGTCCTCCTCCTCCAGGTCAGGCTCCTCTGCTTCTTCCAGATCTTCCAGATCCTGCGGGAGAGGACGCAGGAAAG-----GAA s galGal2.chr3_random 644847 1065 + 1636275 GTATTAAAATCTCAACTTTATTTGGCCAACAAATTCAGTTCCAATGTTAT--TGTAAGCGGAATGCT--AAGAACT----AGGCCTGATGCAGGTCAGGCCTTTGAGGCACTCCCTTGTTCAAGTTCCTCCCCCAAACCCAGTAATTGCAAATTTCGTTTCATGTATTTTTATCAGGCCCTCCCATACCACCCACCTTCCTGGTCAACCCATTCAAACTAATG--CAT---GGGAAGTGACTGCAA--------------AATGGTCTCGCATTTGATCAAAAGGATGGCAGCACAT-------CTAAGCTGGTGAGCCAGCAATCAC--TTC-CACCCTTAGAGCCTGCCATAGCCAGTGCAC-----AGTA----TTCCAC-----CCTTCCA-CATTTTGAAGTCATC--TTTAAGTGTCTTAAAGCAGAAGGGAAAGGAAATGAAATGTC-TAGCGAGCATGAAGAGAAGCACCTTCACATCCACCTTTCACCAGGACTGATGCAGTCAGCCTATTGCCTCT-TCC-CCTACATACTTTG-------ATTCCAGGGAAGAACAGCTGAGAC-AAATGAGAACCCTGACAGGTGGAGAAATCTACAGGC--------TTTTCAAAGA------------AAAAGAAAGAAAA-AGCTT-----TCTTGGAAGA--TATTAGTGGCAATG------CTTCAGAATGTTGGGCAATTAAATTCAT-GCTACCACTTCACAACTTGCTTCTAACCCAAGAGAACAAAATACTTGAAACAAA-ACTGTGTACAAAAAAGTACATCACAATAAAAAAAATAATGAA-CCCAGCTGGCTGGGCTGGCTACCTAGTGATAGATCCCTTCTC-AAAAGTGAAAAGAA---AGAAAAAAGATAGTG--AAGTGTAAAGACAAGTG-AGGGCGAAGCGTTACTTTAAGAGCCAATCCCTGGA-TTTCCAG-TCATTCACCTTC-----------TG--CTTTAAA----------------TCTTAATGGGTTTCTGACTCATTGGGTTGCGTAAC---AGCAACCAATTTAGTGT-CTGATTTTTGGGTGATGTAGATCAGTCATCTCTTTACAATTCATCCTTTTGGATTTTTTGCTCATCATCATCACCTTCCTCAAGGTCCGTTTCTTCATCTGTCTCCAGATCTTCCAGATCCTG-------CATAGCATACAAA-----AGG a score=896.0 s hg17.chr17_random 1901028 115 + 2618010 GCGGGGCGGGCAGGTTGGC---TGCAACA-GCTGAGGCTGCCGGCCCCCNAGCACCCCACACTGCTCACACCGGGGACTAGCCGGCCACGGCGGACATGGCCACCGGCCACTGGAGCAG s panTro1.chr19 81155547 114 + 82489036 GGGGGGGGGGCAGGTTGGC---TGCAACA-GCTGAGGCTGCCGGCCCCC-AGCACCCCACACTGCTCACACCGGGGACTAGCCGGCCACGGTGGACATGGCCACCGGCCACTGGAGCAG s mm5.chr11 120232396 88 + 121648857 AAGGAAGGGGCAGTTAAA-----GGAACA-----AAGCTAC---ACTCT-GGCTGTCCTCAGTG---AAACC-AGCACTCGCTGATCACCAAGGACCTGGCCACCA------------- s rn3.chr10 109965693 106 + 110733352 CAGGAAAGGCCAGTTAAA-----GGACCAAACTGTGGCTGC---CCTCAGTGAAACCGGCCCTC---ACACT--AAACTGGTGGGTCATAAAGGACCTGGCCACCATCACCAGCAGTGG s canFam1.chr18 30355291 86 + 66173745 GTGGAGAAACCCGTCAGGAGGGTGGCACA-GCTCGGCCAGC---AGCCA-TGCCCTGCACCCCG---ACAGG------------------------TTGGCCATCAG-GACAGAAGCAG a score=4309.0 s hg17.chr17_random 1901143 110 + 2618010 CCAACCCTGGTCTTTACGAGCTACACAGGGGTCTTCCCNAGGAAGAGTGACGCCTGGGGGATTTCTGCCTATAGCAGGATGAATCAGAGCCCCCACTGTGTCAGGAACCC s panTro1.chr19 81155661 108 + 82489036 CCAACCCTGGTCTTTACGAGCTACACAGGGGTCTTCCC-AGGAAGAGTGACGCCTGGGGGATTTCTGCCTATAGCAGGAT-AATGGGAGCCCCCACTGTGTCAGGAACCC s mm5.chr11 120232484 62 + 121648857 -------------TCACCAGC------------------------AGTG--GCCTGG-----TTGTGTATAAGGCAAGACACGGCATGTCTTCCA----GTCAGGAACCC s canFam1.chr18 30355377 36 + 66173745 CCGACTCTGGTATCTACGAGC-------------------------------------------------------GGAT-------------------GTGTGGAACCC a score=-353.0 s hg17.chr17_random 1901253 3 + 2618010 TGG s panTro1.chr19 81155769 2 + 82489036 T-G s mm5.chr11 120232546 3 + 121648857 CAG s rn3.chr10 109965866 3 + 110733352 TAG s canFam1.chr18 30355413 3 + 66173745 CAG a score=-30940.0 s hg17.chr17_random 1901256 460 + 2618010 GAATCCCAGCTCAGCCTTGGACCCTTCCACTGGGCATGGAAGGCGTATGTGTGTCTCCCAGCTTGGCACCATGGAGTCTACAGAGGGTCCACATCTC-GGCAGGGACAACAGCCCCAGCATGAAGTCCAGGCACAGTCACCACTGGGGTGTGACCATTCTACTT--CCAACCCTTG------------GGCTCTGGCCAATGACAGGCCACAGGCAGCACCAGGGGCCGGCCCTCCA-TCCCCAG-------CCTGGGCAGAGTATTCCCACCTCCCACTGTGCACCAGCACTCCCAGCAGGCCCT--GCCAGCCT----GGGCTGACCATGCCCTCATCTCC----TTCACCATGGTCAAGCACCCCGCCCCTGCCGCATCCTCCCAACACCAGCN-CTTCCTGCTTCCCCGGCA-GAGTCACCACTGCN--TGCTGGCCAC-GCGCTGAC--------GGGCAGGACTAAACTCCCGAGGGCAGACCCATGTCTGCGCCCTTGT s mm5.chr11 120232549 356 + 121648857 -------------------------CCAACCAGGAATGG------------------------TGCTA----GGAACCTGCAGAG---CCCCAGCCCAGGCAGGGACAACAGGCCCAGCACAAGCTGCAG-CACAGCAGCCGTTGG------------TTACTTTGCCAGGCTGTGTGTGGAGTGCAGAGTACTGCATATGGACAGA----AGGCAGCACT---------TACTCTACTCCCCAATAGGTCCCTTGGGGCCAGTAT----ACCTCTCACTT--CAACAGGATTTCTAGGTGGACCT---CAAGCTC----CACCCTATCAAATCCTGATCTGC-----------------------------CTTCTGCTTCCTCC--ATATCAGCAACATCAAGGTTAACAGTCATAAGCAAGCCGAGCT--TCCTAGGTATAGATCTACT--------GAGTGGGA-------------GGCAG-CCTATGTCTACTCTCTAGT s rn3.chr10 109965869 376 + 110733352 GAACCCCAGCTAAACCT---AACTTCCAACTGGGCATGG------------------------TTCTA----GGAACCTACAGA----TCCCAGACCTGGCAGGGACAACAGGCCCAGCACAAGTTGAAG-CTCAGTAGCTGTTGG------------TTACTTTCCCAGGCTGTGTGT---------GGAAGTGCCTGGCCACAGG----ACACAGCACT---------TACTCCATTCCCTGACAGATCTCTTGGGGCCAGTAT----ACCTCTCGCTT--CAGTAGGACTTCTAGGTGGTCCT---CAAG-----------------GACACTTGCCTTCAAGTTCCACCCTATTAAATCCTGACCTGCCTTCTGCTT-----------------CCTCCATATTATCAA--------CACCATGGTTAATGGTGGTTAT-AAGCTGACCTCTCTAGGTGCAGATCTA----CTGAAAGGCAG-CCCATGTCCACCCTGC--- s canFam1.chr18 30355416 165 + 66173745 --------------------------------------G------------------------TTCCA----GGGT------------CTGCAGCTC-------GGTGACAG-CCCACCAC-----------------------GG------------CTTC-------------------------------------------------ACGGAGCACT-----------------------------GTCTTGGCGG----------GCCTGCTGCTA--CTGTGGGCCTCC-----AGCCCTATGCCAGCCCCCCTGGCCCGGGCACACCCACAGCTGC-----------------------------C---------------------------------------------------CAAGGCC-------AACAT-----------------GGACAGGCCTA----------AGCTG-CC---GTCTGGT------- a score=2348.0 s hg17.chr17_random 1901256 9 + 2618010 GAATCCCAG s panTro1.chr19 81155771 9 + 82489036 GAATCCCAG s rn3.chr10 109965869 9 + 110733352 GAACCCCAG a score=-473.0 s hg17.chr17_random 1901716 17 + 2618010 GCCCGGGCCCCGCCAGC---- s rn3.chr10 109966245 17 + 110733352 AGTCTAGGGCCATCAGC---- s canFam1.chr18 30355581 17 + 66173745 ----GGGAGACCTCAGCCGAT a score=887.0 s hg17.chr17_random 1901733 87 + 2618010 GGGCTGGGGATGGACCTCTGAGTCCAAGTTAGCAGCATGTGAGGAACCG---GTGCCATGTGTCTGAAAAGNGTTTTCTAAGCAAAATCT s canFam1.chr18 30355598 76 + 66173745 GGGCTGGGGA-GAGCATGTGAGCTCCAGTTAGCAG-------GGAGCCTCACGGGACACGTCTCAGC------TGCCATGAGCAAACGCC a score=1146.0 s hg17.chr17_random 1901820 31 + 2618010 GGTTTTTAAAGATGCCTTCA-ACGTCGTCCCC s mm5.chr11 120233115 30 + 121648857 GGCTTTGAAAGGCACCTTTA-ACATC-CCTGC s canFam1.chr18 30355674 32 + 66173745 AGCATTTAAGGACCCCTACATACGGAGTACCC a score=0.0 s hg17.chr17_random 1901851 39 + 2618010 TAAAGAAGTGCTGGCCAGGGAGAGCTGTTTCAGCAGAGC a score=315.0 s hg17.chr17_random 1901851 23 + 2618010 TAAAGAAGTGCTGGCCAGGGAGA s mm5.chr11 120233145 23 + 121648857 TGTCTAAGTGGTAACCATCGAGC a score=-431.0 s hg17.chr17_random 1901874 16 + 2618010 GCTGTTTCAGCAGAGC s mm5.chr11 120233168 14 + 121648857 ACTTCTTT--CAAACC s rn3.chr10 109966502 16 + 110733352 GCTGTTTTAAGTGGTG a score=-3644.0 s hg17.chr17_random 1901890 107 + 2618010 -ACTG-GGAGCACATCCCTTGCCCTGCTGGGCGNAAGGTGTNGGGGCCCCAGAGCCCTGGACG-CACAGACGTGCCTCCAATGGCACCATTCCCATCACAAGCCGAGCCC s mm5.chr11 120233182 58 + 121648857 -A--------------------------------AAGG-----------CAAAGTCTAGGGT--CACAGCTGTGCCT------GTTACATGGCCACCAAAGTCCAAGTCA s rn3.chr10 109966518 84 + 110733352 -ACTGTAGAGTACGTCTCTCAAACCA--------AAGG-----------CAAAGTCTGGGGTGTTACAGCTGTGCCT------GTTACATGGCCACCGAAGTCTCTATCA s canFam1.chr18 30355706 62 + 66173745 ATCTGGAGATTAGCTCCC-------------------------------CCCAGCCCGGGTA--CACACGCCTGCCT------CCCACGGTGCCCCCGCAG--------- a score=-10220.0 s hg17.chr17_random 1901997 35 + 2618010 AAG--TGGGCATG-----TCCCGTGGGGCC-AAGGGGCTGAAT s mm5.chr11 120233240 18 + 121648857 AAGCCTGAGC-------------TAGGACC------------T s rn3.chr10 109966602 43 + 110733352 AAGCCCAAGCTTAGTACCTCCACAAGGACCCGAGCGGCCACAC s canFam1.chr18 30355768 26 + 66173745 --GCCTGCCC-------------CTGGACC--ACAGGGCGCAT s fr1.chrUn 128689720 31 + 349519338 AAGCAGAAAT-------GTCCCAAAGAGCT-GAGGTGAT---- a score=502.0 s hg17.chr17_random 1902032 7 + 2618010 CCCAGAG s canFam1.chr18 30355795 7 + 66173745 CCCAGAC s fr1.chrUn 128689751 7 + 349519338 CTTACAT a score=807.0 s hg17.chr17_random 1902032 2 + 2618010 CC s mm5.chr11 120233258 2 + 121648857 CC s canFam1.chr18 30355795 2 + 66173745 CC s fr1.chrUn 128689751 2 + 349519338 CT a score=-358.0 s hg17.chr17_random 1902034 5 + 2618010 --CAGAG s panTro1.chr19 81156544 5 + 82489036 --CAGAG s mm5.chr11 120233262 5 + 121648857 --CATGG s canFam1.chr18 30355797 5 + 66173745 --CAGAC s fr1.chrUn 128689753 5 + 349519338 TACAT-- a score=0.0 s hg17.chr17_random 1902039 1 + 2618010 A a score=546.0 s hg17.chr17_random 1902039 1 + 2618010 A s panTro1.chr19 81156549 1 + 82489036 A s mm5.chr11 120233267 1 + 121648857 A s canFam1.chr18 30355802 1 + 66173745 A a score=91.0 s hg17.chr17_random 1902039 1 + 2618010 A s canFam1.chr18 30355802 1 + 66173745 A a score=165.0 s hg17.chr17_random 1902040 11 + 2618010 CCAGCCCAGGG s panTro1.chr19 81156550 11 + 82489036 CCAGCCCAGGG s mm5.chr11 120233268 7 + 121648857 ----CCCAGAG s rn3.chr10 109966645 4 + 110733352 -----TCAG-- s canFam1.chr18 30355803 10 + 66173745 -CTGGCTAGGG s fr1.chrUn 128689758 11 + 349519338 CTGCCTCCGGG a score=-2128.0 s hg17.chr17_random 1902051 4 + 2618010 CT---------GT s panTro1.chr19 81156561 4 + 82489036 CT---------GT s mm5.chr11 120233275 2 + 121648857 -----------GT s rn3.chr10 109966649 2 + 110733352 -----------CT s canFam1.chr18 30355813 13 + 66173745 CCCATCGACCACT s fr1.chrUn 128689769 4 + 349519338 TC---------GT s danRer1.chrUn 46008720 4 + 367113659 CT---------GC a score=-2425.0 s hg17.chr17_random 1902055 6 + 2618010 GAC-CCC-- s panTro1.chr19 81156565 6 + 82489036 GAC-CCC-- s mm5.chr11 120233277 6 + 121648857 GGC-CAC-- s rn3.chr10 109966651 6 + 110733352 GGC-CAC-- s canFam1.chr18 30355826 7 + 66173745 GGCTCCT-- s danRer1.chrUn 46008724 6 + 367113659 ---TTCCTC a score=38.0 s hg17.chr17_random 1902055 11 + 2618010 GACCCCACTCA s danRer1.chrUn 46008724 11 + 367113659 TTCCTCATCCT a score=7131.0 s hg17.chr17_random 1902061 5 + 2618010 ACTCA s panTro1.chr19 81156571 5 + 82489036 ACTCA s mm5.chr11 120233283 5 + 121648857 ACTCA s rn3.chr10 109966657 5 + 110733352 ACTCA s canFam1.chr18 30355833 5 + 66173745 ACTCA s galGal2.chr3_random 646484 5 + 1636275 ACTCA s danRer1.chrUn 46008730 5 + 367113659 ATCCT a score=149627.0 s hg17.chr17_random 1902066 96 + 2618010 CGTCATCATCCCCTG---------CCCCATCCTGGCCACCGCTCTCCANGGAATTTCTTAAAACCATCCAGCGTGCGTTCCCCGTTGTAATCAATGACCTGTGGA-------- s panTro1.chr19 81156576 95 + 82489036 CATCATCATCCCCTG---------CCCCATCCTGGCCACCGCTCTCCA-GGAACTTCTTAAAACCATCCAGCGTGCGTTCCCCGTTGTAATCGATGACCTGTGGA-------- s mm5.chr11 120233288 95 + 121648857 CCTCATCGTCCCCTG---------CTCCATCCTGGCCACCACTCTCCA-AGAATTTCTTAAAACCGTCCAGTGTCCGCTCGCCGTTGTAATCAATGACCTGCAGG-------- s rn3.chr10 109966662 95 + 110733352 CGTCATTGTCCCCCG---------CTCCATCCTGGCCACCGCTCTCCA-AGAATTTCTTAAAACCATCTAGTGTCCGCTCACCGTTGTAATCAATGACCTGCAGG-------- s canFam1.chr18 30355838 95 + 66173745 CGTCATCGTCCCCAG---------CTCCGTCCTGGCCACCGCTCTCCA-AGAACTTCTTAAAACCATCTAGTGTCCGCTCACCGTTGTAATCAATGACCTGTGGA-------- s galGal2.chr3_random 646489 95 + 1636275 CATCATCAGCTGCTG---------CTCCATCCTGGCCTCCACTCTCCA-AGAATTTTTTGAAGCCTTCTAGTGTCCTCTCTCCATTATAGTCAATTACCTACACA-------- s fr1.chrUn 128689773 104 + 349519338 CCTCATCGTCCCCTGCAGGGGCACCGCCCTCTTTACCGCCGCTCTCCA-GGAACTTGGTAAAGCCTTCCAGCGTTCTTTCCCCATTGTAGTCGATCACCTGTTGA-------- s danRer1.chrUn 46008735 109 + 367113659 CTTCATCTCCAACTG---GTGCCCCACCTTCTTTTCCTCCACTCTCCA-AAAATTTTGTGAAACCATCTAGTGTTCTCTCACCATTGTAGTCAATTACCTACATATTGAAGGA a score=-7209.0 s hg17.chr17_random 1902162 5 + 2618010 ----AGACA s panTro1.chr19 81156671 5 + 82489036 ----AGACA s mm5.chr11 120233383 2 + 121648857 ----A---A s rn3.chr10 109966757 1 + 110733352 ----A---- s canFam1.chr18 30355933 1 + 66173745 ----G---- s galGal2.chr3_random 646584 2 + 1636275 ----G---G s danRer1.chrUn 46008844 5 + 367113659 AGACA---- a score=-2686.0 s hg17.chr17_random 1902167 46 + 2618010 GGGATGAGTGC-----AGGGNGCTGGTCCCGG----CCCAGAGCCAATCTCCTGG s panTro1.chr19 81156676 45 + 82489036 GGGGTGAGTGC-----AGGG-GCTGGTCCCGG----CCCAGAGCCAACCTCCTGG s mm5.chr11 120233385 30 + 121648857 GGGA--AGTGA-----AGAGGGTTGAACTGGG----CCTAG-------------- s rn3.chr10 109966758 30 + 110733352 --AGTGAGTGA-----AAAGGGTTGAACTGGG----CCCAG-------------- s canFam1.chr18 30355934 30 + 66173745 GGGGAGAGGGAGACTTAGGGAGCTGG-----------CCAG-------------- s galGal2.chr3_random 646586 50 + 1636275 AAAACACATCA-----AGATAATTGTTACGGGCACCCACAGAACCACGTTCCTGG a score=2694.0 s hg17.chr17_random 1902213 19 + 2618010 CATTGGCTCCTCCTCCCTA s panTro1.chr19 81156721 19 + 82489036 CATTGGCTCCTCCTCCCTA s mm5.chr11 120233415 4 + 121648857 ---------------CATA s rn3.chr10 109966788 16 + 110733352 ---CAGCGCCTGCTGCACA s canFam1.chr18 30355964 16 + 66173745 ---CAGCTCCCCCTCCCTG a score=-4478.0 s hg17.chr17_random 1902232 165 + 2618010 GAGAAAGGCAGAGCAGGCCCGGTCCGNGTGGCTCACACCCGGAATCCAGCACATNTNGggagttcaaaaacagcctaggcaatatagtgagatcccatctctctcgaaaaacaaaGGTGGGTGCTTCTGAAGGAGCTCCCACAGCTCTTCTCCNCACCTGACTAG s panTro1.chr19 81156740 161 + 82489036 GAGAAAGGCAGAGCAggcccggtccg-gtggctcacacccggaatccagcac--tttgggagttcaaaaacagcctaggcaacatagtgagatcccatctctctcaaaaaacaaaGGTGGGTGCTTCTGAAGGAGCTCCCACAGCTCTTCTCC-CACCCGACTAG s mm5.chr11 120233419 46 + 121648857 GA-------------------------------------------TCAGCAC--CT----------------------GCCGTATAGCAGGA------------------------------GTGTCTGAAG----------AACTGTTTGCC------------ s rn3.chr10 109966804 29 + 110733352 CG------------------------------------------------------------------------------------GCAGGA------------------------------ATGTCTGAAG----------GGCTGCCTGCC------------ a score=1956.0 s hg17.chr17_random 1902397 9 + 2618010 CCCCAGGCT s panTro1.chr19 81156901 9 + 82489036 CCCCAGGCT s galGal2.chr3_random 646929 9 + 1636275 CCACAAGCT a score=-18086.0 s hg17.chr17_random 1902406 71 + 2618010 -CCTTCCAGAGAGGCACCCAGGCTGGCG--TGGGGACCACT-GCTCTTCCCAGAGCCCGCCCCAGCCCCGTCTGG s panTro1.chr19 81156910 71 + 82489036 -CCTTCCAGAGAGGCACCCAGGCTGGCG--TGGGGACCACT-GCTCTTCCCAGAGCCCGCCCCAGCCCCGTCTGG s mm5.chr11 120233465 14 + 121648857 -----------------------------------------------------------CACCAGCCCA--TAGG s rn3.chr10 109966833 16 + 110733352 -----------------------------------------------------------CCTCGGCCCAGCAGGG s canFam1.chr18 30355980 24 + 66173745 -CCTCCCTGCCGGGC--------------------------------------------------CCGCGCGTGG s galGal2.chr3_random 646938 69 + 1636275 TTTGCCCAGAAATGAATTCAAGCAGACAACTAAGCATTTCTAGTGCTCCCTTGTTATTCCATCAG------TAGA a score=-2619.0 s hg17.chr17_random 1902477 8 + 2618010 AGGGAAGG------- s panTro1.chr19 81156981 8 + 82489036 AGGGAAGG------- s mm5.chr11 120233479 8 + 121648857 GTGGAAAA------- s rn3.chr10 109966849 5 + 110733352 AGGGA---------- s galGal2.chr3_random 647007 15 + 1636275 AAGGTCAGCTGCCTT s fr1.chrUn 128690546 8 + 349519338 AAGTAACA------- a score=334911.0 s hg17.chr17_random 1902485 204 + 2618010 CGCACCGTCCTGTCGGCACTGGCAGGAAAGAACTTGAGTGTGGGGAAGCTGTGCACTTTGACGGCCTCCANCCTCGTTGGCAGTCGAGTCCATCTTGGCGATGACGATGTTCTCATGGTCCTTGTACGTCTCTCCCAGTTTATCCCAAATNGGGAGCCAACTGTTTGCAGTGACNCACACCATGGGGCATCTG--------AAAAGAAAGCA s panTro1.chr19 81156989 201 + 82489036 CGCACCGTCCTGTCAGCACTGGCAGGAAAGAACTTGAGTGTGGGGAAGCTGTGCACTTTGACGGCCTCCA-CCTCGTTAGCAGTCGAGTCCATCTTGGCGATGACGATGTTCTCATGGTCCTTGTACGTCTCTCCCAGTTTATCCCAAAT-GGGAGCCAACTGTTTGCAGTGAC-CACACCATGGGGCATCTG--------AAAAGAAAGCA s mm5.chr11 120233487 200 + 121648857 CACACCGTTCTGTCTGCACTTGCTGGGAAGAACTTCAGTGTGGGAAAGCTATGTACTTTGACAGCTTCCA-CCTCATTGGCTGTTGAGTCCATCTTAGCAATGATGATATTCTCATGATCCTTGTATGTCTCTCCCAGTTTATCCCAAAT-GGGGGCTAGCTGCTTGCAGTGAC-CACACCAAGGGGCATCTG---------AAAGAGAGCA s rn3.chr10 109966854 200 + 110733352 CTTACCGTTCTGTCTGCACTTGCTGGGAAGAACTTGAGTGTGGGAAAGCTGTGCACCTTCACAGCTTCCA-CCTCATTGGCTGTTGAGTCCATCTTAGCGATGACGATATTCTCATGGTCTTTGTATGTCTCTCCCAGTTTATCCCAAAT-CGGGGCTAGCTGCTTGCAGTGAC-CACACCAGGGAGCATCTG---------AAAGAGAGCA s canFam1.chr18 30356004 200 + 66173745 CGCACCGTCCTGTCCGCGCTGGCGGGGAAGAACTTGAGCGTCGGGAAGCTGTGCACTTTCACTGCCTCCA-CCTCGTTAGCCGTCGAGTCCATCTTGGCGATGACGATGTTTTCGTGGTCCTTGTACGTCTCTCCCAGCTTATCCCAAAT-GGGAGCCAGCTGTTTGCAGTGGC-CACACCACGGCGCGTCTG---------AAAGAGAACG s galGal2.chr3_random 647022 206 + 1636275 CTTACGTTTCTGCCAGAGCCTGCAGGGAAGAACTTGAGCGTGGGGAAGCTGTGAATTTTCACTGCCTCTA-CTTCATTGGCTGTTGAATCCATCTTGGCAATGACAATGTTCTCATGGTCTCTGTAGGTCTCTCCCAGCTTGTCCCAGAT-CGGAGCCAGCTGCTTACAGTGAC-CACACCAGGGGGCATCTGTTAA---TTAACAAAGATA s fr1.chrUn 128690554 209 + 349519338 CTCACCTTATGCTCATCTCCTGCAGGGAAGAATTTGAGTGTGGGGAAGCTGTGGACCTTAACCGCTTCGA-TCTCATTGGCTGTGGAGTCCATCTTGGCCACAATGGTGTCAGCGCTGTCTTTGTACTTCTCACCGAGCTTCTCCCAGAT-GGGAGTCAGCTGTTTGCAATGTC-CACACCAAGGTGCATCTGAGACAGTAAACAGAGGTAA s danRer1.chrUn 46009552 201 + 367113659 CTCACCTTACGTTCATCACCAGCAGGGAAGAATTTGAGTGTGGGGAAGCTATGCACTTTGACAGCTTCAA-TTTCGTTAGCTGTGGAATCCATCTTGGCCACAACAATGTTTGCATTGTCTTTAAATTTCTCACCCAACTGATCCCAGAT-AGGGGCTAATTGCTTACAATGAC-CACACCATGGGGCATCTG--------GATAAAGGACA a score=-17049.0 s hg17.chr17_random 1902689 48 + 2618010 GTTCTA-GGGTGTGT--------------------CCTGGACACAAAGC-CACTGGCAGACGCTTCCCCA--------- s panTro1.chr19 81157190 48 + 82489036 GTTCTA-GGGTGTGT--------------------CCCGGACACAAAGC-CATCGGCAGACGCTTCCCCA--------- s mm5.chr11 120233687 41 + 121648857 GTGCTGCGAGCCCGT--------------------CCTGG--ACAGAGC-CACC-ACCGACGTTT-------------- s rn3.chr10 109967054 48 + 110733352 GTACTGAGGACCCAT--------------------CCTGG--ACAGAGCTTACCTACAGACGTTTGTGTC--------- s canFam1.chr18 30356204 25 + 66173745 GCGCTG-AGGC------------------------CCTGG-------GC-CACCCACC--------------------- s galGal2.chr3_random 647228 68 + 1636275 CTGCTA-GCACCAACAGACTAACAAGTTAACATCACTTAGACCCCATGC-CAGACAACCAAGTTCACACA--------- s fr1.chrUn 128690763 53 + 349519338 GTTCTG-GGTTGAAA--------------------TTAAG----AAAAC-GACTCATTCGGGTGTCTGAAACTGCATCA a score=-6756.0 s hg17.chr17_random 1902737 23 + 2618010 GGAGTCTGCCTACCTTGCGCGTG s panTro1.chr19 81157238 23 + 82489036 GGAGTCTGCCTACCTCGCGCGTG s mm5.chr11 120233728 13 + 121648857 -GAGGTTGCCAGCC--------- s rn3.chr10 109967102 20 + 110733352 AGGTGCTATCATTTCCAAGC--- s canFam1.chr18 30356229 15 + 66173745 --------CCCAGTGTGCATGCG s galGal2.chr3_random 647296 17 + 1636275 GGTATTT-TCAACT-----GGCG a score=-11777.0 s hg17.chr17_random 1902760 34 + 2618010 CCCTGGTGG----------------------------------CACGGACCT--------GGGGAGCTGAAAGGGC s panTro1.chr19 81157261 34 + 82489036 CCCTGGTGG----------------------------------CACAGACCT--------GGGGAGCTGAAAGGGC s mm5.chr11 120233741 33 + 121648857 CCCTTATGG----------------------------------AGCCAAGCT---------GGGAACCCAGAGATC s rn3.chr10 109967122 33 + 110733352 CCACCACAG----------------------------------GACCAAGCT---------GGGAACCCAGAGATC s canFam1.chr18 30356244 32 + 66173745 CTCCGGCA-----------------------------------CTCAGACCA---------GGGAGCTGCAGGCCC s galGal2.chr3_random 647313 66 + 1636275 CCTCTGTGGTTTGGATTCCGTATGATG----------CTTTCTCCCCAACCCTAGTCATGGAGAATTTTACAACTC s fr1.chrUn 128690853 60 + 349519338 CCCTGATGA--------CTGAAAGATAGTGGAGTTCTTTGTATTTTAGACTT--------TTTTAGGTCCAAAGTC a score=225851.0 s hg17.chr17_random 1902794 136 + 2618010 AA---------------------------------CACTTACAGAACTCCACAAAGACGTTTTTTTTCTCATCAAAAGCCACGTCTTCAAAGTTCTTCCCAACAAGCACCTTGACAGGCTGCTTGTCCCAGTCCTCCGGCAGCTCCTGGCTCATCAGGTGGGGCTGGAG s panTro1.chr19 81157295 136 + 82489036 AA---------------------------------CACTTACAGAACTCCACAAAGACGTTTTTTTTCTCATCAAAAGCCACGTCTTCAAAGTTCTTCCCAACAAGCACCTTGACAGGCTGCTTGTCCCAGTCCTCCGGCAGCTCCTGGCTCATCAGGTGGGGCTGGAG s mm5.chr11 120233774 136 + 121648857 CT---------------------------------CACTTACAGAATTCAACAAACACGTTCTTTTTCTCATCAAAAGCGACCTCTTCAAAGTTCGCCCCAACCAGTACTTTTACCGGCTGTTTGTCCCAGTCTTCAGGCACTTCTTGGCTCATCAGGTGGGGCTAAAG s rn3.chr10 109967155 136 + 110733352 CT---------------------------------CACTTACAGAATTCAACAAACACGTTCTTTTTCTCATCAAAAGCAACCTCCTCAAAGTTTTTCCCAACTAGCACTTTCACTGGCTGCTTGTCCCAGTCTTCAGGCAGTTCCTGGCTCATCAGGTGGGGCTAGAA s canFam1.chr18 30356276 136 + 66173745 CT---------------------------------CACTTACAGAATTCCACAAAGACGTTCTTTTTCTCATCGAAAGCGACCTCCTCAAAGTTCTTCCCGACAAGCACCTTGACGGGCTGCTTGTCCCAATCTTCAGGCAGCTCCTGGCTCATGAGGTGGGGCTGGAG s galGal2.chr3_random 647379 169 + 1636275 CTTTCATACCATCTACTTGAAAAGATATTGAAAACTACTTACAGAACTCCACAAAGACATTCTTATTCTCATCAAAAGCAACTTCCTCAAAATTCTTCCCAACAAGAACTTTGACAGGCTGCTTGTCCCAGTCTTCAGGGAGATCCTGGCTCATCAGGTGAGGCTGGAG s fr1.chrUn 128690913 143 + 349519338 ATTTCAACA--------------------------GACTTACAAAATTCCACAAAGACGTTCTTTGAGGGATCAAAGACAACTTCTTCGAAATTTTTGCCAACCAAAACCTTAACAGGGGTTTTGTCCCAGTCTTCAGGGATGTCCTGGCTCATGAGGTGGGCCTACAA s danRer1.chrUn 46010685 136 + 367113659 ---------------------------------AATACTTACAAAACTCTACAAAGACATTATTAGCAGGATTGAAGGCAACCTCTTCAAAGTTTTTTCCCACCAAGACCTTGACAGGATTTTTATCCCAGTCTTCAGGAATGTCCTGACTCATCAGATGAGGCTAAAG a score=3027.0 s hg17.chr17_random 1902930 11 + 2618010 GGCAGGCAGGG s panTro1.chr19 81157431 11 + 82489036 GGCAGGCACGG s mm5.chr11 120233914 11 + 121648857 GAGAGGGAAAG s rn3.chr10 109967291 11 + 110733352 TAGAGAGAGAG s canFam1.chr18 30356412 11 + 66173745 GGCAGGTGGGC s fr1.chrUn 128691056 11 + 349519338 GGTAAAAAAGG a score=7237.0 s hg17.chr17_random 1902941 128 + 2618010 CACGGTGAGGGGCGGCGATGCC------TGGGGGACCACAGAGCTCCCCAANCCCTCACCCTGCCCGGGA---CTGAGGTGCGTGGCTGCCCTGGGCACACCAGGGTGGCAGCCGCAGACACCAACAGTGCCAAGAA s panTro1.chr19 81157442 127 + 82489036 CACGGTGAGGGGCGGCGATGTC------TGGGGGACCACAGAGCTCCCCAA-CCCTCACCCTGCCCGGGA---CTGAGGTGCGTGGCTGCCCTGGGCACACCAGGGTGGCAGCCGCAGACACCAACAGTGCCAAGAA s mm5.chr11 120233925 90 + 121648857 TACAGTCAGGTACAACATTGCC-------------CCACA-----CTCCAA-C----------TCCGGAAGAGCTGAGACAC---ACTGCCCTCCAGAAACCAGAG---------------CTGATGTTGCCAGGAA s rn3.chr10 109967302 112 + 110733352 -AGAGAGAGAGAGAACAAGGACGAACAGTCAGGTACAACATTG--CCCCAC-ACATCAAT---CCTGGCATAGCTGAGACAT---ACTGTCCTCCACAAACCAGAG---------------CTGACGTTGCCAGGAA s canFam1.chr18 30356423 57 + 66173745 CGAGGTCAGGGACGCCG--GGC-----------------------CTCCGC-CCCCCGCC---CCGAGGA---------------------------------------------------CCAGCGCTGCCTGGAA a score=17700.0 s hg17.chr17_random 1903069 113 + 2618010 TCCAGAAAGAGAAGGCTGGGCCAGTGGGCTGGGCCCAATGAGCCCACGCAGGCC--GCACCCTCGCCGGCCAGGAGGTTTCCCTGAGGAGCATCTGGGC-CAGCCGTGTGGACAAG s panTro1.chr19 81157569 113 + 82489036 TCCAGAAAGAGAAGGCTGGGCCAGTGGGCTGGGCCCAATGAGCCCACGCAGGCC--GCACCCTCGCCGGCCAGGAGGTTTCCCTGAGGAGCATCTGGGC-CAGCCGTGTGGACAAG s mm5.chr11 120234015 111 + 121648857 TCTGTTAAGAGAAGGCTAAGTCTTCAAGGCTGACCAACTAAA---ATGCAGATCAAGTGTCCTAG-TGGCTTTGAAGCTACCTTGGTGCATGGCTAGGC-TAGTACACCAGGAGGG s rn3.chr10 109967414 106 + 110733352 TCTGGTAAGAGAAGGTTGAGCCTTCAAGGCAGACCAACTAAG---ATACAGATCAAGTGTCCTAG-TAGCCATGAAGCTACCT------ACCTCAGAGCATGGCTATACAAGGGGG a score=-6860.0 s hg17.chr17_random 1903182 142 + 2618010 AGGGCTCCTACAGGTCCCCA-----------AAGGTGTGACAAGAATGGTGGTCTTCACACCATCTTGGGCT--------------------CCGTCCT------CTTACTCTGAA--NGATCTT----ACTTTGAGGACGAAGCCCAGGACACTGAGAGCCCAG---AGACCCCAAGGTGGCGGCTC s panTro1.chr19 81157682 141 + 82489036 AGGGCTCCGACAGGTCCCCA-----------AAGGTGTGACAAGAATGGTGGTCTTCACACCATCTTGGGCT--------------------CCGTCCT------CTTACTCTGAA---GATCTT----ACTTTGAGGACGAAGCCCAGGACACTGAGAGCCCAG---AGACCCCAAGGTGGCGGCTC s mm5.chr11 120234126 160 + 121648857 AGTCTGTCTATGGTTCCCTCGCCTTGACCTTGGTATATGACAAGAACGGC-GTCCTCAAACCATCAGAGGAA--------------------CCATGCTAAGGAACGTGCGCTGTC----ATCTTCAGCGTTTGAAAGAGGTACTATAGGAAGCCCAAGGCCCGG---GATCCCTCGGGTGGAACCTC s rn3.chr10 109967520 168 + 110733352 AGTCCGTCTATGGTTCCCTC-CCCCGACCCTGGTATAGAGTAAGAACAGA-GACCTCAAAGCAGCAGAGGCTGTGCTAAGGACCTTGTGCTAACACCTT------CGGAATTTGAAGGAGATACT----AC-------AGGAAGCACAGGACACTGGATGCCATGGATAGAACCTATTCTGCAAGCC- s canFam1.chr18 30356480 45 + 66173745 ---------AGGGGTCATGC----------------------------------------CCATGCGGCGCC--------------------CCGTCCT------C----------------------------------------------------------G---GGACCCTCGGCTC------- a score=186.0 s hg17.chr17_random 1903324 26 + 2618010 TACCCGGGAGGCAGCCNCTGGCCCGG s panTro1.chr19 81157823 25 + 82489036 TACCCGGGAAGCAGCC-CTGGCCCGG s rn3.chr10 109967688 22 + 110733352 TAACTGTGTTACCACA----ACCCAG s canFam1.chr18 30356525 26 + 66173745 AGGCCCAGGGCCAGCCCCATGCCACG a score=-2358.0 s hg17.chr17_random 1903350 12 + 2618010 GGACGCGCCTGC---- s panTro1.chr19 81157848 11 + 82489036 G-ACGCGCCCGC---- s rn3.chr10 109967710 12 + 110733352 GTCCAACTCCAC---- s canFam1.chr18 30356551 12 + 66173745 TGCGGCGCCCCC---- s fr1.chrUn 128691168 12 + 349519338 ----GGGCCCTCTCTC a score=100.0 s hg17.chr17_random 1903361 1 + 2618010 C s danRer1.chrUn 46010935 1 + 367113659 C a score=332218.0 s hg17.chr17_random 1903362 222 + 2618010 ACCTTGATTTTGCCCTCCAGGAANGCGGTGGCAGAACTCTGTGATCCTCTCTGCCGTCAGCTCCTCCGATTCGGGCTTGTACTTNGGTCATCTCCTCCNTCNCAGGGNTGATGAGGCGCACGGCCGGGCACTCTTCCTTCTTCANGGCCAAAGAACTCGAGGATGCGCTGGTTGTCGGTGTGGTCGCTGTCGATGAAGATGAACAGGATC--TGGGGG---AGAAAA s panTro1.chr19 81157859 216 + 82489036 ACCTTGATTTTGCCCTCCAGGAA-GCGGTGGCAGAACTCTGTGATCCTCTCTGCCGTCAGCTCCTCCGATTCGGGCTTGTACTT-GGTCATCTCCTCCT--CCAGGG-TGATGAGGCGCACGGCCGGGCACTCTTCCTTCTTCA-GGCCAAAGAACTCAAGGATGCGCTGGTTGTCGGTGTGGTCGCTGTCGATGAAGATGAACAGGATC--TGGGGG---AGAAAA s mm5.chr11 120234331 217 + 121648857 ACCTTGATCTTGCCCTCTAAGAA-GCGGTGGCAAAACTCTGTGATTTTCTCAGCCGTCAGCTCATCTGACTCTGGTTTGTACTT-GGTCATCTCTTCCT--CTAGGG-TAATAAGCCGCACAGCGGGACACTCCTCCTTCTTCA-GGCCAAAGAACTCAAGTATGCGCTGGTTATCAGTGTGGTCGCTATCGATGAAGATAAATAGGATC-TTGGGGG---AGAAAA s rn3.chr10 109967722 217 + 110733352 ACCTTGATCTTGCCCTCCAGGAA-GTGGTGGCAAAATTGTGTGATCTTCTCAGCTGTCAGCTCGTCTGACTCCGGTTTGTACTT-GGTCATCTCTTCCT--CCAGGG-TAATAAGCCGCACAGCTGGACATTCCTCCTTCTTCA-GGCCAAAGAACTCAAGTATGCGCTGGTTGTCAGTGTGGTCACTATCGATGAAGATGAACAGGATC-TTGGGGG---AGAAAA s canFam1.chr18 30356564 216 + 66173745 ACCTTGATCTTTCCTTCCAGGAA-GCGGTGGCAGAAATCTTCGATCTTCTCGGCCGTAAGCTCGGTCGACTCTGGCTTGTACTT-GGTCATCTCCTCCT--CCAGGG-TGATGAGGCGCACAGCGGGGCACTCCTCCTTCTTGA-GGCCAAAGAACTCGAGGATGCGCTGGTTGTCAGTGTGGTCGCTGTCGATGAAGATGAACAGGATC-TGGGGGG---AGAAA- s galGal2.chr3_random 648077 218 + 1636275 ACCTTGATCTTGCCCTCCAGGAA-TTTATTACAGAATTCTTTGATCTTGTCTGCTGTGAGGTCATCTGACTCGGGTTTGTATTT-GGTCATTTCTTCTT--CTAATG-TTATCAAACGTACAGCTGGACATTCTTCTTTCTTTA-GACCAAAAAACTCCAGAATCCTTTGATTATCACTGTGGTCACTGTCTATGAAGATGAACAGGATCTTTGGAGG---AAAAAA s fr1.chrUn 128691180 220 + 349519338 ACCTTGAGTTTGCCCTCTACGAA-CTTCGTGCAGAACTCAATGATGCCCTCGGTGGTGATGGCATCACTCTCAGGCTTGTACTT-GGTCATCTCATCCT--CCAGAG-TAATCAGGCGGATGGCTGGACACTCCTCTTTCTTCA-GGCCAAAGAACTCAAGGATGCGCTGGTTGTCCTCAATATCACTGTCAATGAATATGAAGAGGATC-TGGAAAGGCCAGACAA s danRer1.chrUn 46010936 216 + 367113659 ACCTTTAATGTCCCTTCTACGAA-GGATGTGCAGAAGCTGATTATGTTCTCTGCTGTTATTTCAGAAGATTCTGGTTTGTATTT-GGTCATTTCTTCCT--CAAGGG-TGATAAGGCGGATGACCGGGCATTCTTCCTTCTTAA-GGCCAAAGAACTCTAAAATTCTCTGATTATCATCCACATCACTGTCAATGAAGATGAAGAGAATC-TGTGGGG---AAAGT- a score=-2602.0 s hg17.chr17_random 1903584 3 + 2618010 GGA- s panTro1.chr19 81158075 3 + 82489036 GGA- s mm5.chr11 120234548 1 + 121648857 G--- s fr1.chrUn 128691400 3 + 349519338 ACA- s danRer1.chrUn 46011152 3 + 367113659 -GAA a score=-223.0 s hg17.chr17_random 1903587 4 + 2618010 GGTT s panTro1.chr19 81158078 4 + 82489036 GGTT s canFam1.chr18 30356780 2 + 66173745 --TG s galGal2.chr3_random 648295 4 + 1636275 AAAG s fr1.chrUn 128691403 4 + 349519338 GATT a score=-760.0 s hg17.chr17_random 1903591 18 + 2618010 GCACAGGNTGCGGGAGAC s panTro1.chr19 81158082 17 + 82489036 GCACAGG-TGCAGGAGAC s mm5.chr11 120234549 15 + 121648857 ACACA---TTTAGACAAA s canFam1.chr18 30356782 18 + 66173745 GCTCGGTGGGTGGGGGGC s galGal2.chr3_random 648299 16 + 1636275 GCAAAG--TGGTAAAGAC a score=-6423.0 s hg17.chr17_random 1903609 47 + 2618010 GGCTGGCC-TCTGCCTCCAGCCCTGACTTTGCTCGGAAG--------------------------------------------------------------------------------------------------CAGACCGTG s panTro1.chr19 81158099 145 + 82489036 GGCTGGCC-TCTGCCTCCAGCCCTGACTTTGCTCGGAAGGTGCGGGAGACGGCTGGCCTCTGACTCCAGCCCTGACTTTGCTCGGAAGGTGCAGGAGATGGCTGGCCTCTGCCTCCAGCCCTGACTTCGCTCGGAAGCAGACCGTG s mm5.chr11 120234564 39 + 121648857 TTCTGGCCATATGCTCACACCCTTGAAACAGCTCTTAAG----------------------------------------------------------------------------------------------------------- s canFam1.chr18 30356800 28 + 66173745 CGAGGGTG-GCCGCCTGCAGTCCTGA----------AAG----------------------------------------------------------------------------------------------------------- a score=-10699.0 s hg17.chr17_random 1903656 110 + 2618010 CTCC---GGTGCCTTTTTCCTCCAACCTGGATTCCGGGGTTGCCCAACCAGACCAGCAGGTGACTGGGAGC-----AGAGGTCTGGCCTGGNCTGGCCCCTCGCCTACATCCAGGCTG---- s panTro1.chr19 81158244 110 + 82489036 CTCCT--GGTGCCTTTTTCCTCCAACCTGGATTCCAGGGTTGCCCAACCATACCAGCAGGTGACTGGGAGC-----AGAGGTCTGGCCTGG-CTGGCCCCTCGCCTACATCCAGGCTG---- s mm5.chr11 120234603 50 + 121648857 --------------------------------TCTGGGGCTGCTTAATTAGAGTAACAAGTATTTG--------------------------CTAGC----------CAACAGGGCTG---- s canFam1.chr18 30356828 47 + 66173745 -------------------------CGGGGACGCTGCTGCTACCCTGCTG-------------CTGGAAGC-----GGG----------------------------CGCACAGGCTG---- s galGal2.chr3_random 648400 100 + 1636275 ---CTAAGTTGGCCTCTTCCTTCTCAAAGCCCGTGAGGGCTCCCC--------------GTGACAGAATGCATGCTAGAGCTTCAACACTC-CAAGCAGCTCG----CATGCAGACTTGGCA a score=-931.0 s hg17.chr17_random 1903766 73 + 2618010 TCCTGAATCAGGTGCCCGATCCAGTCCAGCA--GGCAGCCTCAGGAAGGCCC--CACACTTGTCACCTCGGGAAGAG----------- s panTro1.chr19 81158354 73 + 82489036 TCCTGAATCAGGTGCCCGATCCGGTCCAGCA--GGCAGCCTCAGGAAGGCCC--CACACTTGTCACCTCGGGAAGAG----------- s mm5.chr11 120234653 53 + 121648857 GCC----------------------CTAGTG--GGTAGCACTACAGAGGACCAGCAGACTGCTAGCCCCTGTAAAAG----------- s galGal2.chr3_random 648500 72 + 1636275 --------TCTTTGTTTGTTATGGCAAGGCAAGGGATGCTTCAAG------C--CATCTTCCACATCTAAGTGGATACAAGCAGACAG a score=2248.0 s hg17.chr17_random 1903839 35 + 2618010 TTGTACTGCTCCCTGGCACCGCCCCACGAGCCA----CC s panTro1.chr19 81158427 35 + 82489036 TTGTACTGCTCCCTGGCACTGCCCCACGAGCCA----CC s galGal2.chr3_random 648572 29 + 1636275 TTGTGCAG----AAGGCACT------CAATTCATAGTCC a score=642.0 s hg17.chr17_random 1903874 4 + 2618010 CAGA s panTro1.chr19 81158462 4 + 82489036 CAGA s galGal2.chr3_random 648601 4 + 1636275 AAGA s danRer1.chrUn 46011203 4 + 367113659 CAAC a score=-268.0 s hg17.chr17_random 1903878 3 + 2618010 AGA s panTro1.chr19 81158466 3 + 82489036 AGA s rn3.chr10 109968142 2 + 110733352 AG- s galGal2.chr3_random 648605 1 + 1636275 --A s danRer1.chrUn 46011207 3 + 367113659 AGA a score=27.0 s hg17.chr17_random 1903881 4 + 2618010 -GCAG s panTro1.chr19 81158469 4 + 82489036 -GCAG s mm5.chr11 120234722 4 + 121648857 -GTAG s rn3.chr10 109968144 4 + 110733352 -GTAG s galGal2.chr3_random 648608 4 + 1636275 -CCAT s danRer1.chrUn 46011210 4 + 367113659 TGCA- a score=279985.0 s hg17.chr17_random 1903885 411 + 2618010 CTCACCTTGCCCTTGAAGCTCTCGGCTGCTGTTTTGAAGTTGCTCAGTTTGCCGTCATAGTCAGACACACTCTTGGGCAAGAACAGCAGGATGTGAGTCTTGATTTCACCTCCAAAAATCTTCGGGGCTGTCTGTGTTATAAACTTAAGT--TACTGGGTCTGAGTCACACA-----CTATTAATGCAGAAGATT--CTCCCAATGGCCT-----CCA-ATGTCAGACGCTGGACAGCAGTGGT-----------------------------GACCGGGAGCCTCATGCCACCCCNNAACCC----ACTCCTNCCC----------CATCCCCA--GCCTGGG----------------------------GGCTGCAGGGC------------------------------------------------------------------------AGCCGCACCTGCTCGGTGAACTCGATGACAAGGGGCAGCTGGTTGTGTTTGATAAAGTCCAGCAGGTTCTCCTTGGTGACCTCCCCTTCAAAGTTGTTCCGGCCTTCATCAAACTG s panTro1.chr19 81158473 417 + 82489036 CTCACCTTGCCCTTGAAGCTCTCGGCTGCTGTTTTGAAGTTGCTCAGTTTGCTGTCATAGTCAGACACACTCTTGGGCAAGAACAGCAGGATATGAGTCTTGATTTCACCTCCAAAAATCTTCGGGGCTGTCTGTGTTATAAACTTAAGT--TACTGGGTCTGAGTCACACA-----CTATTAATGCAGAAGGTT--CTCCCAACGGCCT-----CCA-ATGTCAGACGCTGGACAGCAGTGGT-----------------------------GACCGGGAGCCTCATGCCACCCC-CAACCC----ACTCCT-CCC----------CATCCCCA--GCCTGGG----------------------------GGCTGCAGGGCA----------------------------------------------------GCAGG------------GAAGCCGCACCTGCTCGGTGAACTCGATGACAAGGGGCAGCTGGTTGTGTTTGATAAAGTCCAGCAGGTTCTCCTTGGTGACCTCCCCTTCAAAGTTGTTCCGGCCTTCATCAAACTG s mm5.chr11 120234726 326 + 121648857 CTCACCTTGCCCTTGAAGCCCTCGGCTGCTCTCTTGAAGCTGCTCAGCTTGCCGTCATAGTCAGATACACTCTTGGGCAGGAACAGCAGAATGTGTGTCTTGATCTCACCTCCAAAAATCTTCGGAGCTGTCTGTGGAACAGG---AAGCAATACTGCATCT--GTCTTCTG-----CTATACACCCAG-----T--GTCCCAGC---------------------------------------------------------------------------------------CCCC----CCC----ACTCTA-CCT------------------------------------------------------------CAGGGC------------------------------------------------------------------------CCCCCCACCTGTTCAGTGAACTCGATGACCAAAGGCAGCTGATTGTGCTTGATGAAGTCTAGAAGCTTCTCCTTGGTGATCTCACCCTCAAAGTTGTTGCGGCCTTCATCAAACTA s rn3.chr10 109968148 320 + 110733352 CCCACCTTGCCCTTAAAGCCCTCGGCCGCTTTCTTAAAGTTGCTCAATTTGCCATCGTAGTCAGACACACTCTTGGGCAGGAACAGCAGAATATGTGTTTTGATTTCACCTCCGAAAATCTTTGGAGCTGTCTGTGGAACAAGTAGCAGT--TACTGGGTCAG-TTCTTAC---------------------------TCCCAGTGGCCC---------------------------------------------------------------------GAGC---------CCCT----ACC----ACTCTA-CCT------------------------------------------------------------CAGAGG--------------------------------------------------------------------------CCCCACCTGTTCAGTGAACTCGATGACCAAAGGCAGCTGGTTGTGCTTGATGAAGTCTAACAGCTTCTCCTTGGTGATCTCACCTTCAAAATTGTTGCGGCCTTCATCAAACTA s canFam1.chr18 30356875 418 + 66173745 CTCACCTTCCCCTTGAAGCGCTCGGCCGCCTTCTTGAAGTTGCTCAGTTTGCTGTCGTAGTCAGACACGCTCTTGGGCAGGAACAGCAGGATGTGGGTCTTGATCTCCCCTCCGAAGATCTTCGGGGCCGTCTGTGTCACAAACACAGGT--TACTGAGTCTGAGCCACAGACCAAGCCACGAACACAGGATGTT--CTCTCAACAGCTATGATGCCG-CCACCACACACTCGGCGCCTGGGGA-----------------------------TCCCTGGGGCCAGGA----CCTC----TCCTGGGGCGCCA-CCC----------CACTCTCAGGGCACAGG----------------------------ACCCACTAGAG------------------------------------------------------------------------AGCCGCACCTGCTCTGTGAACTCGATGACCAGTGGCAGCTGGTTGTGCTTGATGAAGTCCAACAGCTTCTCCTTGCTGATTTCCCCCTCGAAGTTGTTGCGGCCTTCGTCAAACTG s galGal2.chr3_random 648612 508 + 1636275 CTTACCTTCCCTTTGAAGTTTCCAGCTGCAGTCTTGAAGTTGTCCAATTTCCCTTCATAATCAGACACACTTTTTGGTAAGAACAGCAGAATGTGAGTCTTGATCTCTCCTCCAAAGATTTTAGGAGCAGTCTGGGGAATAAAA--------CACTAAACTGAAAACAAAGC-----TTGGCCCGACAT---------TCTCACTAGGTA-----ACACAAGTCAAATACTACAGGACTGCTTT-----------------------------GAACAGCAAGCTTACACCTCCTT----TCCCTGCATTCTT-CCCTCACTCGACTCAGCTCTA--GCATAGGCAGTTACACCTCTCCTTAAACTAGCATCAGCTCCAGGATAAAACAGCACACAACCTGTATTTGTAATGTCACAATGTGTTTAGTGGCAATGGGAAGGGGTCTCACATCCGAACACCCACCTGCTCAGTAAACTCTATGACAAGAGGCAGCTGATTAGACTTGATGAAGTTCAGCAAGTTATCTTTGGTAAGATCCCCTTCAAAGTTGTTACGTCCTTCATCAAACTG s fr1.chrUn 128691471 333 + 349519338 CCTACCTGACCCTTAAACCCTTCGGCAGCTTTCTTAAACTGGTCCATTTTATCTTGGAAATCTGAAGCAGCTTTAGGCAGGAACATGAGGATGTGGGACTTGATTTCACCACCAAAGATTTTAGGAGCAGTCTGC---ATGTAAATAAGA--GATTGCATAAGGATCATGGA----AGGACTGGAGCGG---------TCTTATTA-------------TAGACGCACGCCGG-----------------------------------------------------------TCAC-----------GTGTGA-ACC------------------------------------------------------------CAGCTG----------------------------------------------------------------------------TTACCTGCTCGGTGAACTCGATGACAAGAGGCAGCTGGTTGGACTTGACAAAATTCAGGAGGTTCTCTTTGGTCACCTCGCCATCAAAAGTGTTGCGACCTTCATCAAACTG s danRer1.chrUn 46011214 408 + 367113659 CTTACTTTGCCTTTAAAACCCTCTGCTGCCTTCTTAAATTGGTCCATCTTATCCTGGAAGTCTTTGGCTGCTTTAGGCACAAACATTAGGATATGGGACTTGATGTCACCTCCAAAGATTTTGGGAGCAGTCTGCAGTGAAGAAATAAGA--ATCTTAGAATGAATCGTTTT-----CCCATACAGCTGCAAACTAACTTCAAATAGTTC-----ACTCATGTTCTATACTACAGGTTTGTGttttttttttttttttttttttttttttttAAATCAATAGACAGAAATGACACC----AAA----ACTAAA-ATC----------------------------------------------------------------------------------------------------------------------------------------------CTACCTGCTCTGTGAACTCGATGACCAGGGGAAGCTGGTTGGCCTTGATGAAGTTCAGTAAACTTTCTTTGCTGACCTCTCCATCGAAAGTATTTCGACCCTCATCAAACTG a score=9973.0 s hg17.chr17_random 1904296 11 + 2618010 TGGACAGAAAG s panTro1.chr19 81158890 11 + 82489036 TGGACAGAAAG s mm5.chr11 120235052 11 + 121648857 CGGACAGAAAG s rn3.chr10 109968468 11 + 110733352 TGGACAGAAAG s canFam1.chr18 30357293 11 + 66173745 TGGATGCAGAG s danRer1.chrUn 46011623 11 + 367113659 AAGACAAAAAG a score=6862.0 s hg17.chr17_random 1904307 10 + 2618010 AGGGCCCTGA s panTro1.chr19 81158901 10 + 82489036 AGGGCCCTGA s mm5.chr11 120235063 10 + 121648857 GGGGCTGTGA s rn3.chr10 109968479 10 + 110733352 GGGGCTGTGA s canFam1.chr18 30357304 10 + 66173745 AGGGCCGTGA a score=13446.0 s hg17.chr17_random 1904317 125 + 2618010 CTGAGCATTGCTGCTGGGAGCACAGCC-CCTGGGCCCGGGTCTCCCTGGACGTGGGAAGTCACAGCAGCCAGCAGCCCTGCCCTCCCGTGGGGTTTCGAGCCACAGGTCCAGCAATGGGTACAGGA s panTro1.chr19 81158911 125 + 82489036 CTGAGCATTGCTGCTGGGAGCACAGCC-CCTGGGCCCGGGTCTCCCTGGACGTGGGAAGTCACAGCAGCCAGCAGCCCTGCCCTCCCGTGGGGTTTCGAGCCACAGGTCCAGCAATGGGTACAGGA s canFam1.chr18 30357314 103 + 66173745 --GTGCCTTG-----GAGCCCCCAGCCTCCTGTGCC--ACCCTCCCTGCGACCGGG--------GCAGCCCGCA--CCTTCCCGTCTggggggcgggggg----ggggggggcAATGGGAGCAGAA a score=43357.0 s hg17.chr17_random 1904442 535 + 2618010 CATGGCTGTTCCTCGACAGTAAGACTGGCTCTGGTCACGGCCTTATGGCTGCCCGTGAATTCAACAGCTGGCTTCACATCCACAATGCAAGCCTGGCGCACGTGGTCCTCCAGCAA-Ccttgaagtgtggcccatccccagggcccctagccttttcagggcacccatgtggtcaaagctattttcttttttatttgtttttgagacagt-------nctncgnctctgttgcccaggctgga-gtgcagtggc-atgatctt-ggctcact-gcaa-cctctgcctcccaggttcaagtga-ttttcctgccttagcctcccgagtagctaggactacaggcgcctgccaccatgcctggctaatttttttttgtatttttagtcgagatggggtattaccatgttggccacgaaggtcttgatc---tttttttttttttttttgtgatggagtcttgctgtgtctcccaggctggagtgcagtggcgtgatctccactcactgcaagctccgcctcccggattcaagccattctcctgcctcagcctcc s panTro1.chr19 81159036 550 + 82489036 CATGGCTGTTCCTCGACAGCAAGACTGGCTCCGGTCACGGCCTTATGGCTGCCCGTGAATTCAACAGCTGGCTTCACATCCAAAACTCAAGCCTGGCGCACGTGGTCCTCCAGCAACCCTTGAAGTGTGGCCCATCCCCAGGGCCCCCAACCTTTTCAGGGCACCCATGTGGTCAAAGCTAttttcttttttatttgtttttgagacagtctcgcagtctc--gctctgttgtccaggctggaggtgcagtggcaacgatcttgggttcactggcaaccctctgcctcccaggttcaagtgatttttcctgccttagcctcccgagtagctaggactacaggcgcctgccaccacgcctggctaatttttttttgtatttttagtcgagatggggtattaccatgttggccacgaaggtcttgatcttttttttttttttttttttgtgacggagtcttgctgtgtctcccaggctggagtgcagtggcgtgatccccattcactgcaagctccacctcccggattaaagacattctcctgcctcagcctcc a score=19561.0 s hg17.chr17_random 1904977 214 + 2618010 caagtagctgggactataggcgcccgccaccaccggctaatttttggtatttttagtagagatgggtttcaccacgttagccaggatgg--tctcaatctccttacctcgtgatctgcccgcctcggcctcccaaagtgctgggattataggcgtgagccaccgcgcccggctggtcaaagctattttcacactcacacttctctggcctctgcct s panTro1.chr19_random 1298461 216 - 57627672 caagtagctgggactataggcgcccgccaccaccagctaatttttggtatttttagtagagacgggtttcaccgtgttagccaggatggtctctcaatctccttacctcgtgatctgcccgcctcggcctcccaaagtgctgggattataggcgtgagccaccgcgcccggctGGTCAAAGCTATTTTCACACTCACACTTCTCTGGCCTCTGCCT a score=5252.0 s hg17.chr17_random 1905191 89 + 2618010 tttcactctccctctcacgtgctgcggcacagacccacagaggctgctgggcgcatg------gtgtcgcaagagcagg-agggcaggagaggaga s panTro1.chr19_random 1298677 89 - 57627672 TTTCACTCTCCATGTCACGTGCTGCGGCACAGGCCCACAGAGGC----GGGCG--TGTACGAAGTGTCGCAAGAGCAGG-AGGGCAGGAGAGGAGA s canFam1.chr18 30357561 84 + 66173745 TCCCACCCTCCCCTGAGCACACCGTGCCCTTGG---ATGGAAGC----GGAGGGATGGAGGACATCCCGCACGCTGAGGTCGGCCAGGAGA----- a score=1359.0 s hg17.chr17_random 1905280 126 + 2618010 atcctgctggaggaatctaaaacatcactc--agcactaaattgtttttgtctgg-gacaaactagtttccgtaaagatgtgatttatgataacatgtaatgggattattattctttta----aaataaattT s canFam1.chr18 30357645 112 + 66173745 ------CTGGCAGAAACCGAA----CACTCTTACCACTCAGCTGCAGTTGTCTGGAGAAAAAGGGACTTTCACAAGACTGTTACTTGTGAT--CATACAATG---------TTATTTTAGATGAAAGGGATTT a score=182.0 s hg17.chr17_random 1905280 2 + 2618010 at s panTro1.chr19_random 1298766 2 - 57627672 AT a score=83558.0 s hg17.chr17_random 1905480 996 + 2618010 tcgagaccag-cctggccaacacggtaaaaccccatctctactaaaaatacaaananataagnctgggcgtggtggcgggcacctgtaatcccaggtacttgggaggctgaggcaggagaatcgcttggacccgggaggcggaggttgcggtgagccgagatcgcaccantgcactccagcctgggcgacaagagcgaaactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaggccaggtgcagtggctcacacctgtaatcctagcagtttgggaggctgaggcaggtggatcacttgagttcacgagtttgggaccagcctggccaacatggtgaaacctcgactctaccaaaaatacaaaaatttagctgggtgtggtggtgcacacctgtaatcccagctgctcgggagactgaggcagaagaaacacttgaacccgggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacagagcaagactnctgtctcaaaaaaaaaaaaaaa-tacaaaaatacaaaaATCAGTTNgggtatggtggcacctgcctgtaatcccagctacttgggaggctgaggcaggaggattgcttgagtctgggaggtagacattgcagtgagatcgcaccactgcactccagcctgggtgac--gagtgaaacAggccaggcgtggtggctcacgcctgtaatcctagtactttgggaggctgaggcgggcggatcacctgaagccaggagtttcagagcagcctaatccaacatggtaaaacgtcgtctttactagaaatacaaaaattagctgggcgtggtggcgggtgcctgtaatcccaactacttgggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgagcccagatcgtgccactgcattcgagcctggcaacagagcaagacttcatctcaaaaaataaaaaataaaaataaaTAGAG s panTro1.chr19 81160089 995 + 82489036 tcgagaccagtcctggccaacatggtaaaaccccctctgtacttaaattgcaaaaataaa---cttggcatgttgtcggcctcccttaatcccgggtatttgggagggtgaggcaggggaatcacttggtcccaggaggcggaggtttgggtgatccgagattgcacctatgcattccagcctgggcaacaagagggaaactctgtctggaaaaaaaaaaaaaaaaaaaaaaaaaggccgggtgcagtggctcacacctgtaatcctagcagtttgggaggctgaggcaggtggatcacttgagttcatgagtttgggaccagcctggccaacatggtgaaacctcgactctaccaaaaatacaaaaaattagctgggtgtggtggtgcacacctgtaatcccagctgctcgggagactgaggcagaagaatcacttgaacccgggaggcagaggttgcagtgagccaagatcgtgccactgcactccagcctgggcaacagagcaagact-ctgtctcaaaaaaaaaaaaaaaatacaaaaatacaaaaatcagtt-gggtgtggtggcacctgcctgtaatcccagctacttgggaggctgaggcaggaggattgcttgagtctgggaggtagacattgcagtgagatcgcaccactgcactccagcctgggtgacaagagtgaaacAggccaggcgtggtggctcacgcctgtaatcctagtactttgggaggctgaggcaggcggatcacctgaagccaggagtttcagagcagcctagtccaacatggtaaaacgtcgtctttactagaaatacaaaaattagctgggtgtggtggtgggcgcctgtaatcccagctacttgggaggctgaggcaggagaatggcttgaatccgggaggcggaggttgcagtgagcccagatcgtgccactgcattcgagcctggcaacagagcaagacttcatctcaaaaaataaaaaataaaaataaataaaG a score=31887.0 s hg17.chr17_random 1906476 269 + 2618010 AGAAAAAAACGattttttacattcttagttctagtttctaatacaacagatcctgaaaggcg----caatccacgtgcctgtaanggccctggggacccctaataatgcacggcagc-ttcagggagtcctaaggccacaaGATGGAGAGGCTGTGG----CGCCCCAA-----CCACGAGGGGTCAGCCTGCAGC-----TGAGGATGCGGCCTCGGCTCAGGCTCAGAGAGGCGCCCC-----------TGTGCTGAGGCTCT-TCAAGTGAGAATTTTGGGTGAGCCTTCCATCATT s panTro1.chr19 81161084 268 + 82489036 AGAAAAAAACGATTTTTTACATTCTTAGTTCTAGTTTCTAATACAACAGATCCCGAAAGGCG----CAATCCACGTGCCCGTAA-GGCCCTGGGGACCCCTAATGATGCACGGCAGC-TTCAGGGAGTCCTAAGGCCACAAGATGGAGAGGCTGTGG----CGCCCCAA-----CCACGAGGGGTCAGCCTGCAGC-----TGAGGATGCGGCCTCGGCTCAGGCTCAGAGAGGCGCCCC-----------TGTGCTGAGGCTCT-TCAAGTGAGAATTTTGGGTGAGCCTTCCATCATT s canFam1.chr18 30357835 287 + 66173745 atgaacaaactgtttaagacactt----ctctaatttgtggcccaataaaaatcaataggtataatcaatccacaaccacagaa-gctcttcgggatccccaacaa--catggaagagttccaggagtcctggagccCCGAGGGTGGGAGGCCGTGGTTGTTGACCAGAGAGGCCCAAGAGGGG---GCCTGCAGCCCCCTCAAGG--GGGGCTCTGGAAGGGGCGCACAGAAGCCACCCCCTGCCGCAGATGGGCTGATGCCCTGCCCAGTGAGGGTACT-GGTGAGCCTGCCTTCTTC a score=127938.0 s hg17.chr17_random 1906745 1453 + 2618010 CCCCCGAACTACTTTTT-TATTTATTTTTAAAAtttatttatttttttattttttgagacnggagttttgctattgtcacccaggctggagtgcaatggcatgatctcggctcactgcaacctccacctcccgagttccagcaattctctttcctcagcctcccgagtagctgggatcacaggcacccgccaccacgcctggctaatttttgtatttttagtagagacagggttttaccatgtt-ggccaggctggtcttgaactcctgaccccaggtgatccacttgcctcggcctcctaaagtgctgggattataagtgtgagccactgagcccggccCAAACTAttttatttttttttt-gagacggagtttcactcttgttgcccaggctagagtgcagtggcaggatcttggctcactgcaacctctgcctcccgggttaaagcaattctcctgcctctgcctcccaagtagctgggattacagg-tacgcgccaccacgcctggctaattttgtttttttagtagagatggagtttctttctnccatgnt-ggtcaggctggtcttgaactcccgacctcaggtgatcggcctgcttcggcctcccaaagtgctggaattacaggtgtgagccactgcacctggACAGAACTACTTTTTNAAATACTTATTTATTTA-----AtttattttattttattttatctattttgagactgagttttgctcttgtttccctggctagagtgcaatggcacgatctcgatcttgcctcattgcaatctccgcctcttgggttcaagtaattctcctgcctcagcctcgcaagtagctgggattataggcatgtgccaacacgcctggcaaattttgtatttttattagagatggggtttctccatgttggtcaggctggtctcaagctcctgacttcaggtgatctgcccgccttggcctcccaaagtgctgagattacaggcgtgagccagcgtgtccagccAAAAAAAtttattttatttttactttttgtagagacagtcttactatgttgcccaggctggtctcagactcctggcctcaagcaatcctcttgtcctggcctccctaagtgctgggatcacaggtgtgagccaccaagcctggTCCCCTTGAACCtttttttttttt--gagacagagtcttgctctgtcgcctacgctggagtgcagtggtgcttctcggctcactgcaagctccgcctccntgagttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccacgcccnggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgacccgcccacctcagcctcccaaagtgctgggattacaggcatgagcccctgcacccggccTCCTCAAACT s panTro1.chr19 81161352 1460 + 82489036 CCCCCGAACTACTTTTTGTATTTAtttttttaattttttttttttttt-ttttttgaga-tggagttttgctattgtcacccaggctggagtgcaatggcgtgatctcagctcactgcaacctccacctcccgagctccagcgattctccttcctcagcctcccgagtagctgggatcacaggcacccgccaccacgcctggctaatttttgtatttttagtagagacagggttttaccatgtttggccaggctggtcttgaactcctgaccccaggtgatccacttgcctcggcctcctaaagtgctgggattataagtgtgagccactgagcccggccCAAACTAttttatttttttttttgagacggagtttcactcttgttgcccaggctagagtgcagtggcaggattttggctaactgcaacctctgcctcccgggttaaagcaattctcctgcctctgcctcccaagtagctgggattacagggtacgtgccaccacgcctggctaattttgtttttttagtagagatggagtttctttct-ccatgtttggtcaggctggtcttgaactcccgacctcaggtgatcggcctgcttcggcctcccaaagtgctggaattacaggcgtgagccactgcacctggACAGAACTACtttttaaaatatttatttatttattttaatttattttattttattttatctattttgagactgagttttgctcttgtttccctggctagagtgcaatggcacgatctcgatcttgactcattgcaatctccgcctcctgggttcaagtaattctcctgcctcagcctcgtaagtagctgggattataggcatgtgccaacacgcctggcaaattttgtatttttattagagatggggtttctccatgttggtcaggctggtctcaagctcctgacttcaggtgatctgcctgccttggcctcccaaagtgctgagattacaggtgtgagccagcgcgtccagccaaaaaaatttattttatttttattttttgtagagacagtcttactatgttgcccaggctggtctcagactcctggcctcaagcaatcctcttgtcctggcctccctgagtgctgggatcacaggtgtgagccaccaagcctggtcCCCTTGAACCttttttttttttttgagacagagtcttgctctgtcgcctacgctggagtgcagtggtgcttctcggctcactgcaagctccgcctc-atgagttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccacgcccag-ctaattttttgtatttttagtagagacggggtttcaccgtgttagccgggatggtctccatctcctgacctcgtgacccgcccacctcagcctcccaaagtgctgggattacaggcatgagccactgcgcccggccTCCTCAAACT a score=72024.0 s hg17.chr17_random 1908198 678 + 2618010 TCTTAAATGAGACTTGGGGAAATAAATCACGCATCCTTTCTTACTGGNCCGTTTCCATGTATGCGTCTGCAGAGTAACTT---AGAGACCAGGT-GCCACTCCCTGCTCTT----GTGCACGCTGTGCCTGGGCCACCCTGGCCTGGCCTGACTGCCAAGGAGCTGATGTTAAACCAGGGCA---CAAGCACCAACCACCCTGCCCGAACC-CGAGGGGCAGAGGCTTCTAAGCCTGCTACCTCTTCCCCAGA--GGGGCAAAGGCGGGTAAGGAGAGGCAGAAAAGCCAAGTTCAGGAGGCCCTTGGAGGGAATCCTTTGGAACATGAGCTGCTGATCACAGCCGTGCTCCCAGTGGCACGGGTGGGCTCGCACTGTGCCCAGGAGTAACGCCGGGCCGCAACTGCAGGCAAACGAAATCCCCCCACCCCTGCAGAACAATGTCTCTGACTCCCTCCAGAGTGTCAGGCGCCGCCTACACCATCTCATGCCAAGAAGCCAGGNAGGAGACACTGCC----GCAGCTGTCCCAGGGCTGCCATCGTTTCAGCAGAGATGCTACACCACACT-CAATCACGGTCTACTGCGGTAAGGGAA----ACTGGTCCACTTAGCAGGGCACAGCAGCAGGAGGCCAGCCCTGCCAGGCCACGNGTGACAAAC-AGCATAGAAACGC-CCAATGCAGGCCGNGGTGGTAt s panTro1.chr19 81162812 674 + 82489036 TCTTAAATGAGACTTGGGGAAATAAATCACGCATCCTTTCTTACTGG-CCGTTTCCATGTATGCGTCTGCAGAGTAACTT---GGAGACCGGGT-GCCACTTCCTGCTCTT----GTGCATGCTGTGCCTGGGCCACCCTGACCTGGCCTGACTGCCAATGAGCTGATGCTAAACCAGGACA---CAAGCACCAACCACCCTGCCCGAGCC-CGAGGGGCAGAGGCTTCTAAGCCTGCTACCTCTTCCCCAGA--GGGGCAAAGGTGGATAAGGAGAGGCAGAAAAGCCAAGTTCAGGAGGCCCTTGGAAGGAATCCTTTGGAACATGAGCTGCTGATCACAGCCGTGCTCCCAGTGGCACGGGTGGGCTCGCACTGTGCTCAGGAGTAACGCCGGGCCGCAACTGCAGGCAAACGAAATCCCCCCACCCCTGCAGAACAATGTCTCTGACTCCCTCCAGAGTGTCAGGCGCCGCCTACACCATCTCATGCCAAGAAGCCAGG-AGGAGACACTGCC----GCAGCTGTCCCAGGGCTGCCATCGTTTCAGCAAAGATGCTACACCACACT-CAATCACGGTCTACTGCGGTAAGGGAA----ACTGGTCCACTTAGCAGGGCACAGCAGCAGGAGGCCAGCCCTGCCAGGCCACG-GTGACAAAC-AGCATAGAAACGC-CCAATGCAggccg-ggtgatat s canFam1.chr18 30358135 576 + 66173745 TCTCAGATCAGACCCGAG---ACAAATTAC---TCTTTTCATCTTAG-ACGTTTCCCTTTATGCTTCCCTAAAGAAACTTCTAGAAGAACAGGTGGCCACTCCCTGCTCCCTCCATTACACGTAGAGCCTGG--------GATTTAGCTGG--TGCACAACAGGGGCTGCTAAATTAGACCAGATCGAG-------------GCCTAGGCCTCGGCGGGCAAAG---CCAAAGCCTTTG---TCTTCCCAAACCTGGGACGGAGAAGAGCGAAAGGGGGCGGAGAAGCCAAGGCCAGGAG------------------------------------------GCCAGGCCCAC-------CAGGCGTGCCGCTGCGGTGACCAGAAGCAC----------------TAGGCCAGCG-----CCCGGCCTCCTCCAGAACCGCATCTCC-ACCCCCACC----TGTCA---GCAGCCTCCCCGATTTCATGCTGGGAGCCCCAGGAACAGA-GCTGCCCCGTGCACCCGCCTC-GAGATGCAACC-TTTTAGCAATGCTGCCACCTCACACTACGCTCGCGGTCTGCTGAGTGAAAAGCAGACGACTGGCC--CTCATTCGGCCGCAGCA-------ACTAGCTCCACGAGGCCCCA-GAGACAAACGAGCCCGAAGGCTTGACACTGCAGGCAGTGGAGACGC a score=260823.0 s hg17.chr17_random 1908876 2956 + 2618010 ggctcacgcctgtaaccccaatgttttggcaggctgaggcaggaggattgcttgagctcagaagttcgagaccagcnctgggcaacnacggtgaaaccccatttccacagaagtattaaaaaatagccaggtgcggtggtgcacacctgtggtcccagctactcagcaggctggggtgggaggactgcttgagcccaggaggtcgaagctgcagtgaagtgtgattgtgccaccgcactccagcctggtaacagagcgagaccctttctcaaacaacaataaCAGGCCCAGTGCTGCCAGCTGGGGGAGAAGAAAAAGTGAAATATCAGAAGCTCTCACACCCATGGTGCCAGTGACCAGCAGCCCCCGCAGAGGTTTTCCTGGGTTGCAGTGCCTGCTAGGGAAGGAAGGGAAGAGCAGGCAAGAGCGGGCCACACAAGAGCACCCGACTCAGCCAGGCTGCCCACTGTGGCCACTGCACACACAGGAAGGCCTCACTCACTTTGAGGGATGGGGGTTAACAGCCTGGTGGNAAAAGGAACAAGTTGGACTCATCCTCTCAGCTGCGGGGTGAGCTCTGACTTCCAGGGCAGCCCCTACCACGTGCACCGGACAGGGGGCCGGGCTTCTGCCCGGAGCTGCCNTGCAACGACCACGTTCGCCATCACAGACACCTGAGCCACCTTCAGTGGGCAGGAAAGCGCCACCCACCAACTGGCATCAAACCCAAGTGGGTTTGTCTGTGCCCAGCTCTAGTGGACTCCAGAGAATGGAGACAGAACGTTAACCTGTGGGGAGCCCACATGGATGGCCACGTGTGAGCCTTTGCAGGCAAGAGCAACGAAACCNACCCTCCCAGCCTTCGCGGACACATATCACCAAANCTGTCCATAGAGTCACAGCGGCCACTGCAGACATCCAGGGCACTGAAGGAGCTGTGGGCTGTGTGACAACACAGNGGTTCGCGAGTTTCGTGGGCTCTGGAGAAAG----------------------------------------------------TCTGCCCCAGAACCCAAGTTTCANGGACAAGACTTGGAACTTTCTCTTTAATAAAAGCTCTAAAAAGACCTTTGGTTCCTTCAACTTTATCCAACACTTCACTGGCTTTTTCTAGTCAGAGGTTTAATTTCCTGGGCACCTTGCAATGGCAATAGACTAATTTAGCAACTCTCTTCCCTTCAGGGGACATCAAGAGAATGTCTCCTGGTAAAGAGCATCTACTGTCTTGAGTTATCTNTGAGGAAGTGGCTGCNAAAACAGCTAAATGACAAGAACAAGAACATGGAAGCAAGCCATCCTGACCCACCCGCACCACCGCGCTCCAGGAAGCTGGCTCTACCCTCCCTCCTACCTGGTCCCGGGGAGTGCTGGATGCTCCGTGCTTACTACAGAAAGTGAATGGGTcggtggctcacacctgtaatcccagcactttgggaggccaaggcaggcggatcatgaagtcaggagttcgagaccaccctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagctgggtgtggtggcgggtgccctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgtgaggcggagcttgcagtgagctgagatcgcgccactgcactccagcctgggcgacagagacagactctgtctcaaaaaaagaaaaagaaaaaaaaaaagaaaGTGAATGGGTTCCTTGTGTCCAAAACCACTCAGCCCCAATCCCAGAGGCTGCCCGTCTGACCGTTTGGCTTATGATGCTGCTGTCTAAAAGG---TTCTTCTCCCCTCTGGAAACGACACANGACAGGAGCTGANAGGTCCGATCGCCCCCGGCCGCCCTNCCTGCCCCTCACTCCCCAGGTCCCTCCTCTCCCGAGACTTTCTCTCCTATCCACACTACCCTGGCTCTGAGCGGCACAAACCCACCATCACCCACATCCAGGTTCAGCTGTCCCTAGAGCACAAGTGTGCGGCCCCAGCCCCACCTGCCTGGTGACCGAGAAAAGAGACAATAGAAACCCACAGGCCCCATCTTGACACTGTGCAAACAAGGACCCTGCTGTGTCCTGGTAACGGGNAGNNGCGNNNAANANGCCACACTGTCCAGGAGCCCTTCCCCAGNAGNAAGGACAGCGGGATCANGATGGCAGTTTTNNCACAGTGGATCCTTANGGGNTCATAATGCCCTTGGGGCTGAGGGGCATACGAAGTGTGGGTGCCACCTGGGTGGGAACACGCCCAGAGCGCCAATACTCCAGACCTCTGGGTAAGGAAAACGTTCTGGAAATAGGGATGCTGCAGGACGCTCTGAATGTAGTTAATACTTTAGAATAGTTAAAACGTGGCcngggcgcggtggctcacgcctgtgatcccaccattttgggaggctgaggcaggcagaccactcggagctcaggagttcaagaccagcctggacaacacagcaaaaccccatgtctaccaaaaaatacaaaaactcag-cccagcgtggt-ggcacgcgcctgtagttccagctgctcgggaggctgaggttagaggatcacttgagcctgggaagcagaagttgcagtgagctaagaatgcaccaccgcactccagcctgggcggcagagtgagaaaccctatctcaaaaaaaaaaaaGGCAAACGGggccaggcgcggtggctcacatctgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcaagagattgataccatcctggccaaaatggtgaaatctcatctctactaaaacaaagattagctgggcatggtagtgcatgcctgtagtcccagctactcgggaggccgaggcaggagaatcacttgaacccaggaggcggagggtgcagtgagccgagatcacgcaactgcactccagcatgggtgacagagcaagac----tctcccaaaaaaaaaaaaaG s panTro1.chr19 81163486 2997 + 82489036 ggctcacgcctgtaaccccaatgttt--acaggctgaggcaggaggattgcttgagctcagaagttcgagaccagc-ctgggcaac-acggtgaaaccctatttccacagaagtattaaaaaatagccaggtgcggtggtgcacacctgtggtcccagctactcagcaggctggggtgggaggactgcttgagcccaggaggtcgaagctgcagtgaagtgtgactgtgccaccgcactccagcctggtagcagagcgagaccctttctcaaaCAACAATAACAGGCCCAGTGCTGCCGGCTGGGGGAGAAGAAAAAGTGAAATATCAGAAGCTCTCACACCCACGGTGCCAGTGACCAGCAGCCCCCGCAGAGGTTTTCCTGGGTTGCAGTGCCTGCCAGGGAAGGAAGGGAAGAGCAGGCAAGAGCGGGCCACACAAGAGCACCCGACTCAGCCAGGCTGCCCACTGCGGCCACTGCACACACAGGAAGGCCTCACTCACTTTGAGGGATGGGGGTTAACAGCCTGGT-GAAAAAGGAACAAGTTGGACTCATCCTCTCAGCTGCGGGGTGAGCTCTGACTTCCAGGGCAGCCCCTACCACGTGCACCGGACAGGGGGCCGGGCTTCTGCCAGGAGCTGCC-TGCAACGACCACGTTCGCCATCACAGACACCTGGGCCACCTTCAGTGGGCAAGAAAGCGCCACCCACCAACTGGCATCAAACCCAAGTGGGTTTGTCTGTGCCCAGCTCTAGTGGACTCCAGAGAATGGAGACAGAACGTTAACCTGTGGGGAGCCCACATGGATGGCCACGTGTGAGCCTTTGCAGGCAAGAGCAACGAAACC-ACCCTCCCGGCTTTCGCGGACACATGTCACCAAA-CTGTCCATAGAGTCACAGCGGCCACTGCGGACATCCAGGGCACTGAAGGAGCTGTGGGCTGTGTGACAA-ACAG-GGCTCGCGAGTTTCGTGGGCTCTGGAGCAAGTCTCTGCCCCAGAACCCAAGGTAAGTCTCTGCCCCAGAACCCAAGGTAAGTCTCTGCCCCAGAACCCAAGGTTCA-GGACAAGACGTGGAACTTTCTCTTTAATAAAAGCTCTAAAAAGACCTTTGGTTCCCTCAACTTTATCCAACACTTCACTGGCTTTTTCTAGTCAGAGGTTTCATTTCCTGGGCACCTTGCAATGGCAATAGACTAATTTAGCAACTCTCTTCCCTTCAGGGGACATCAAGAGAATGTCTCCTGGTAAAGAGCATCTACTGTCTTGAGTTATCT-TGAGGAAGTGGCTGCAAAAACAGCTAAATGACAAGAACAAGAACATGGAAGCAAGCCATCCTGACCCACCCGCACCACCGCGCTCCAGGAAGCTGGCTCTACCCTCCCTCCTACCTGGTCCCGGGGAGTGCTGGATGCTCAGTGCTTACTACAGAAAGTGAATGGGTcggtggctcacacctgtaatcccagcactttgggaggccaaggcaggcggatcatgaagtcaggagttcgagaccaccgtggctaacatggtgaaaacccgtctctactaaaaatacaaaaaaattagctgggtgtggtggcgggtgccctgtagtcccagctactcgggaggctgaggcaggagaatggcatgaacccgtgaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagacagactctgtctcaaaaaaagaaaaag-aaaaaaaaaagaaaGTGAATGGGTTCCTCGTGTCCAAAACCACTGAGCCCCAATCCCAGAGGCTGCCCGTCTGACCGTTTGGCTTATGATGCTGCTATCTAAAAGGTTCTTCTTCTCCCCTCTGGAAACGACACAGGACAGGAGCTGA-AGGTCCGATCGCCCCCGGCCGCCCT-CCTGCCCCTCACTCCCCAGGTCCCTCCTCTCCCGAGACTTTCTCTCCTATCCACACTACCCTGGCTCTGAGCGGCACAAACCCACGATCACCCACATCCAGGTTCAGCTGTCCTTAGAGCACAAGTGTGCAGCCCCAGCCCCACCTGCCTGGTGACCGAGAAAAGAGACAATAGAAACCCACAGGCCCCATCTTGACACTGTGCAAACAAGGACCCTGCTGTGTCCTGGTAACGGGGAGAGGCGGCTAAGAGGCCACACTGTCCAGGAACCCTTCCCCAGGAG-AAGGACAGCAGGATCAGGATGGCAGTTTT--CACAGTGGATCCTTA-GGGGTCGTAATGCCCTTGGGGCTGAGGGGCATAAGAAGTGTGGGTGCCACCTGGGTAGGAACACGCCCAGAGCGCCAATACTCCAGACCTCTGGGTAAGGAAAACGTTCTGGAAATAGGGATGCTGCAGGACGCTCTGAATGTAGTTAATACTTTAGAATAGTTAAAACGTggcc-gggcgcggtggctcacgcctgtaatcccaccattttgggaggctgaggcaggcagaccactcggagctcaggagttcaagaccagcctggacaacacagcaaaaccccatgtctaccaaaaaatacaaaaactcagacccggcgtggtgggcacgcgcctgtagttccagctgctcgggaggctgaggttagaggatcacttgagcctgggaagcagaagttgcagtgagctaagaatgcaccaccgcactccagcctgggcggcagagtgagaaaccctatctcaaaaaaaaaaaaGGCAAATGGggccgggcgcggtggctcacatctgtaatcccagcactttgggaggctgaggtgggtggatcacgaggtcaagagattgataccatcctggccaaaatggtgaaatctcatctctactaaaacaaagattagctgggcatggtaatgcatgcctgtagtcccagctactcgggaggccaaggcaggagaatcacttgaacccaggaggcggagggtgcagtgagccgagatcacgcaactgcactccagcatgggtgacagagcaagactccgtctcccaaaaaaaaaaaaaG a score=2611.0 s hg17.chr17_random 1911832 19 + 2618010 GGCAAATGTTGTTACATGN s panTro1.chr19 81166483 18 + 82489036 GGCAAATGTTCTTACATG- s canFam1.chr18 30360207 18 + 66173745 GGCAAACCTTGCTACGTG- a score=4323.0 s hg17.chr17_random 1911851 31 + 2618010 TTTTATCATAATTG------------------------------AAAAAAAAAAAAAAGCT s panTro1.chr19 81166501 29 + 82489036 TTTTATCATAATTG--------------------------------AAAAAAAAAAAAGCT s canFam1.chr18 30360225 61 + 66173745 TCTTATAACATTTTTTTTTTTTTAAAGAGGAACTAAAACAAAAAAAAAAAAAGAGAGAACT s danRer1.chrUn 46020437 31 + 367113659 TTTTAAAATAAGCT------------------------------AAAAAAAAAAAAATATT a score=2960.0 s hg17.chr17_random 1911882 8 + 2618010 AACAGTCA s panTro1.chr19 81166530 8 + 82489036 AACAGTCA s canFam1.chr18 30360286 8 + 66173745 AAGACCCC s fr1.chrUn 128692255 8 + 349519338 AGCAGTCG s danRer1.chrUn 46020468 8 + 367113659 AACAACCA a score=5042.0 s hg17.chr17_random 1911890 125 + 2618010 AAAGCAGTTCTG--------AG----GCGGCTGTGGCAGGAGAGTGGCCAGAAAGCCCACAGCTGAATGCGAAGACC--AGGCCACAGGCA------TCAGCGCAACACCCCAACTTGGCAAAGCTGCAGAACA---------------TACCTATTGGG s panTro1.chr19 81166538 125 + 82489036 AAAGCAGTTCTG--------AG----GCGGCTGTGGCAGGAGAGTGGCCAGAAGGCCCACAGCTGAATGCGAAGACC--AGGCCACAGGCA------TCAGCGCAACACCCCAACTTGGCAAAGCTGCAGAACA---------------TACCTATTGGG s canFam1.chr18 30360294 142 + 66173745 AGAGTGGCTCTGCTTTCATCAGCCCTGGTGCTGCCACACAAGCCAGAACAAAGGACCCACAGC-----GCAAAGTCTGAAGGCCACTGTAA-----------GTGGCTCCTCAGGTCTG--ATGTTGCAAAACAGGTGCTCGATGAGTCCAGCTGGCGGT s fr1.chrUn 128692263 136 + 349519338 GAATCATTTTTCTTTTTAA-AA----ACGGCCAAGTT--GGGCTACACCCAGGACCCTCCAACTGTCTGCAGCCAAT--GAGCAGCAGATAAACAAACCCGGGTCATTTACCGGTTGGGCTGAGCTGTTGGGCC---------------AACCAACTGGG a score=3744.0 s hg17.chr17_random 1912015 20 + 2618010 CCAAAGGTGCCAGGAGCAAG s panTro1.chr19 81166663 20 + 82489036 CCAAAGGTGCCAGGAGCAAG s canFam1.chr18 30360436 18 + 66173745 CCAGCACCGCCCG--GCCAA s fr1.chrUn 128692399 20 + 349519338 CCAAGATTAGCAAGAGAGAG s danRer1.chrUn 46022368 20 + 367113659 CCAAAAGGGCCAGTTGTAAC a score=-759.0 s hg17.chr17_random 1912035 9 + 2618010 GTTCCCTTA--- s panTro1.chr19 81166683 9 + 82489036 GTTCCCTTA--- s canFam1.chr18 30360454 9 + 66173745 GGTCCTCGG--- s danRer1.chrUn 46022388 9 + 367113659 ---ACCATATTA a score=-693.0 s hg17.chr17_random 1912044 3 + 2618010 ---ACG--- s panTro1.chr19 81166692 3 + 82489036 ---ACG--- s canFam1.chr18 30360463 3 + 66173745 ---GCG--- s fr1.chrUn 128692611 3 + 349519338 ---ACA--- s danRer1.chrUn 46022397 9 + 367113659 GCCACACTG a score=4682.0 s hg17.chr17_random 1912047 8 + 2618010 ATAAGGAG s panTro1.chr19 81166695 8 + 82489036 ATAAGGAG s rn3.chr10 109972148 8 + 110733352 ATAAGCAG s canFam1.chr18 30360475 8 + 66173745 ATAAGGAA s fr1.chrUn 128692614 8 + 349519338 ATAAAGAA s danRer1.chrUn 46022406 8 + 367113659 CTAAAACC a score=91.0 s hg17.chr17_random 1912055 1 + 2618010 A s canFam1.chr18 30360483 1 + 66173745 A a score=91.0 s hg17.chr17_random 1912055 1 + 2618010 A s panTro1.chr19 81166703 1 + 82489036 A a score=0.0 s hg17.chr17_random 1912055 1 + 2618010 A a score=-647.0 s hg17.chr17_random 1912055 2 + 2618010 -AG s fr1.chrUn 128692622 1 + 349519338 -A- s danRer1.chrUn 46022414 2 + 367113659 AA- a score=600.0 s hg17.chr17_random 1912056 1 + 2618010 G s panTro1.chr19 81166704 1 + 82489036 G s mm5.chr11 120238980 1 + 121648857 G s rn3.chr10 109972156 1 + 110733352 G a score=-2350.0 s hg17.chr17_random 1912057 62 + 2618010 CAACGCCACCCTCTGCAGACCA-ACCCCAGAACTAACC----------TGGGCAGAGCTGCCT-GGG--------GCCACTC s panTro1.chr19 81166705 62 + 82489036 CAACGCCACCCTCTGCAGACCA-ACCCCAGAACTAACC----------TGGGCAGAGCTGCCT-GGG--------GCCACTC s mm5.chr11 120238981 63 + 121648857 CAACACCACCCCCTGCAGACCA-ATATCTGACCTGCCC----------TGGGCACAGCTGCCCAAGG--------GGCACTC s rn3.chr10 109972157 63 + 110733352 CAACACCGCCCCCTGCAGACCA-ACATCTGAACTGCCC----------TGGCCACAGCTCTCCAAGG--------GTCACTC s canFam1.chr18 30360484 61 + 66173745 ----GCAGCCCCTGGCCG--CG-GCATCTCACCTG--------------GGGTGGGGCTGCGGGGGGGGTGGGGTGGCACTC s fr1.chrUn 128692628 59 + 349519338 TAACGCCTTCACTGACA---TG-ATTACAGGACAGGCCAATGAAATTTTGAATGAAAGTGGTC------------------- s danRer1.chrUn 46022416 56 + 367113659 TTAAATAATCTTCTGCAAGTTATCCAGCAGAGTTTACAAAA-------TGTAGAAATGTGTGT------------------- a score=328013.0 s hg17.chr17_random 1912119 451 + 2618010 ACCTTCTTAAAGAGGACAACCCCATCTTTGTCGAGCTGGTATTTGGAGAACACGTCACTGTTGGAAGTGATCCCAAATGGTATGTCATCGATGGCCTCTGCTGCCTGCAAAAACTGCTTGGCAGAGTCCGACTCCACGTCCTGAATGAGGNAGGGAG-------AAGCAGAGGTCGTCATGATCCCGC-----AGCACCAAG------CAGTAGGGCAGACCCTGTAGAGCCCAGGCCAGGGGGGACACGTGCAGAA---------------------CTGCCA--GCTG--CAGGC--TGTGGACCCCTCCTCAATG----GATGAC-----------------GGAAGGAAGG--AAGA-----------------------CTGGAATGCTCTGGT-CTCTACCTTGAAGAAGCCGATGACAGCCACCTCGNCTGGACTCCACCAAGGACTCTGCAGCTGCGCCGTCAGGCAGGGTGGTGGCAGCCGGGCCCGTGCGCTTCTTCAGCCAGTTCACGATGTCATCAGCCTCTCTGCCAGCT s panTro1.chr19 81166767 449 + 82489036 ACCTTCTTAAAGAGGACAACCCCATCTTTGTCGAGCTGGTATTTGGAGAACACGTCACTGTTGGAAGTGATCCCAAATGGTATGTCATCGATGGCCTCTGCTGCCTGCAAAAACTGCTTGGCAGAGTCCGACTCCACGTCCTGAATGAGG-AGGGAG-------AAGCAGAGGTCGTCACGATCCCGC-----GGCACCAAG------CAGTAGGGCAGACCCTGTAGAGCCCAGGCCAGGGGGGACACGTGCAGAA---------------------CTGCCA--GCCG--CAGGC--TGTGGACCCCTCCTCAATG----GATGAC-----------------GGAAGGAAGG--CAGA-----------------------CTGGAATGCTCTGGT-CTGTACCTTGAAGAAGCCGATGACAGCCACCTCG-CTGGACTCCACCAAGGACTCTGCAGCTGCGCCGTCAGGCAGGGTGGTGGCAGCCGGGCCCGTGCGCTTCTTCAGCCAGTTCACGATGTCATCAGCCTCTCTGCCAGCT s mm5.chr11 120239044 394 + 121648857 ACCTTCTTAAAGAGGACCACCCCATCTTTGTCCAGCTGGTACTTGGAGAACACACCACTGTTGGACGTGATTCCAAAAGGTATGTCATCAATAGCCTCTGCTGCCAGCAAGAACTGCTTGGCAGAGTCTGACTCTACGTCCTAGAATAGGAAGGGAA-------AAACAGAGGTGGCCA---------------ACCCTGAG------CAGT------GCTCCTGAAAAACA---------------------------------------------------------G--CAG-------GGCCCCTCCCTCTGTG----CG-GAC-----------------AGTAGACAGA--GAAA-----------------------ATGGAATTCTTAAAG-CTCTACCTTGAAGAAACCGATGACCGTCACTTCG-CTTGAGTCCACCAAGGACTCTGCAGCTGCAGTGTCAGACAGGGTTGTAGCTGCTGGGCCCGTGCGTTTCTTCAGCCAGTTGACAATGTCATCAGCTTCCCTGCCAGCT s rn3.chr10 109972220 392 + 110733352 ACCTTCTTAAAGAGGACCACCCCATCCTTGTCCAGCTGGTACTTGGAAAACACATCGCTATTGGAAGTGATTCCAAAAGGTATGTCATCAACAGCCTCTGCTGCCAGCAAGAACTGCTTGGCGGAGTCTGACCCTGCGTCCTGGAAGAAGAAGGG---------AAACAGAGGTGGCCA---------------ATCCTGAG------CAGT------GCTCCTGAGAAACA---------------------------------------------------------G--CAGG------GACCCCTCCCTCTGTA----AG-GAC-----------------AGCAGACAGA--CCAA-----------------------GTGGAATTCT-AAAG-CTCTACCTTGAAGAAGCCGATGACCGTCACTTCG-CTTGAGTCCACCAAGGACTCTGCAGCTGCAGTGTCAGACAGGGTTGTGGCTGCTGGGCCTGTGCGTTTCTTCAGCCAGTTCACAATGTCGTCAGCTTCCCTGCCAGCT s canFam1.chr18 30360545 445 + 66173745 ACCTTCTTGAAGAGGACAACCCCATCCTTGCTCAGCTGGTATTTGGAGAACACGTCGCTGTTGGACGTGATCCCAAAAGGTATGTCATCAATGGCCTCTGCCGCCAACAAGAACTGCTTGGCAAAGTCCGACTCCACGTCCTA---CAGGGAAGAAG-------AAGCAGAGGTGGCCA--------------GACACCCA-----------------GACGCTGAGGCTCC----CTGCCTGGGTCAGCAGCAGGA---------------------CAGCCC--GCTGCCCAGGCCACGGGAAACCAATGACGATG----GG-GAAGGGTGGTTGTGTGTTGGGGGGGGAAGGCCCGAA-----------------------ATGAAGTTCCAAAGC-CTCTACCTTGAAGAAGCCAATGACGGTCACCTCG-CTGGACTCCAGCAAGGCCTCTGCGGCGGCCCCATCAGGCAGCGTAGTGGCAGCAGGGCCTGTGCGCTTCTTCAGCCAGTTTACAATGTCCTCAGCTTCTCTGCCAGCT s galGal2.chr3_random 651540 484 + 1636275 ACCTTCTTGAAAAGGACCACTCCATCTTGGCTAAGCTGGTACTTGGAGAAGACGTCAGCGCTGGAAGAAATCCCAAAAGGAATGTCATCCACGGATTCTGCTGCCAACAAAAACTCCTTCGCAGCATCTGATGTCACATCCTGGAGAATAAAGGAAGGTGTTTCATACAGAACACGATGAACTACAGCATAAACATCCCAGGGCTCACCAGCCAAA--GAACTTGAAGATCA------AGTAAG-------GCAGGA---------------------CAGTAAATGTTT--CACAACTTATGAGCCTTCCCCAGCTGTCAAGG-GGC-----------------AGAAAGCAGG--GAAGGTCCCACACATACACAAAAGCCTCTTGAATGCAAACACACTCTACCTTAAAGAAACCAATCACAACCACTTCA-CTGGAATCCACCAATGTCTCTGCTGCAGCAGCATCTGTCAGGGTAGTGGCAGCCGGTCCCGTGCGCTTCTTCAGCCAGCTGACAATATCATCTGCTTCCCTGCCAGCT s fr1.chrUn 128692687 390 + 349519338 ACCTTCTTGAAGAGGACAACACCGTCCGTGGACACCTCGAACTTTGAGAAAACTGCGTCGTCCGAGGTCATGGCAAAGGGAATTTCATCAATGGCTTCGGCTGCTTTTTCAAATGCCTTTGCATCAGCAGAGCTACCATCCT---------AGAGAC-------ACACGACAGTGCTTT-----------------------------TAATAAAGGCAACCTCACGCATCA---------------CAATGTAGAA---------------------CGAGCC--TTTA--AAG----------------CGCGACA----AAAGTC-----------------ACAAAAAGGG--GGGG-----------------------CTAAAATGTAAACGC-----ACCTTGAAGAATCCGATGACGGCCACCTCA-TTGTCGGCAATGAGAGACTCGGCTTCAGTCACGCCTGTCAGGCTGGCGACAGCGGGGCCTGTGCGCTTCTTCAGCCAACTGACGATGTCCTCTGCCTGTCTGCCAGCT s danRer1.chrUn 46022472 378 + 367113659 ACCTTCTTAAAAAGCACAACACTATCCTTGGCAACTTCAAACTTTGCAAAGACTGAATCATCAGAAGTGATTCCAAAGGGGATGTCATCCACAGCCTCTGCGGTTTTAATGAAGGCCTTAGAATCTTCTGATTCAACATCCT---------GCAAAG-------ACACaa--------------------------------------------------------------------aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGTTAAATCAAACA--AATA--CAATT-------------------TA----AAAATC-----------------CCTGAACAAC--ACAA-----------------------ATGAA-----------TTTTACCTTAAAAAATCCAATTACTGCAACCTCG-TTATCAGCAATAATTGACTCTGCTTGCATGACATCATTTAAAGTAGTGGCTGCGGGTCCAGTTCGTTTTTTCAGCCAGCTGACGATGTCCTCAGCCTGTCGACCAGCT a score=7502.0 s hg17.chr17_random 1912570 19 + 2618010 A-ACCCCAAACAAATGTAGG s panTro1.chr19 81167216 19 + 82489036 A-ACCCCAAACAAATGTAGG s mm5.chr11 120239438 20 + 121648857 ATACCCCAAACAAATGCAAG s rn3.chr10 109972612 20 + 110733352 ACGCCCCAAACAAATGTAAG s canFam1.chr18 30360990 19 + 66173745 G-CACCCAAACACATGCACA s galGal2.chr3_random 652024 16 + 1636275 ACGCCACAAAGATAAG---- a score=25135.0 s hg17.chr17_random 1912589 111 + 2618010 TTCTACTCTCAAACAGGGAGTGCCGCCTGCCCTGCCGCGCCTGC-TCCCGTCTCTGCTCTCTGCCAGCCAGGCTGAGGACACCTGAATCAACCTA-------AGTAAGATGTTCTCCCA s panTro1.chr19 81167235 111 + 82489036 TTCTACTCTCAAACAGGGAGTGCCGCCTGCCCTGCCGGGCCTGT-TCCCGTCTCTGCTCTCTGCCAGCCAGGCTGAGGACACCTGAATCAACCTA-------AGTAAGATGTTCTCCCA s mm5.chr11 120239458 108 + 121648857 TTC--CTGTGAAACAGG--GTATCACCCATCCTGCCG---CTGCATCCCTCTTCTGAGCTGTGCCCGTGAGGCTCAGGA----TAGGTCAGCCTATTACTAGAGCAAAATATTCTCCTA s rn3.chr10 109972632 108 + 110733352 TTG--CTGTCAAACAGG--GTATCACCCATCCTGCCAGGCCA---TCTCTCTTCTGAGCTGTGCCCATGAGGCTCAAGA----CAGCCCAGCCTATTCCTAGAGCAAGATGTCCTCCTA s canFam1.chr18 30361009 78 + 66173745 TTCTACTGAAACCCAGG----CCCACCCTCCCTGCCC--------ATCATCCTGAGCTCTCTGCCAA----------------------AACCAA-------GGCAGGATATTCTCTTT a score=12737.0 s hg17.chr17_random 1912700 158 + 2618010 CCATGGAAGAGGCCCGGTGCCGTCCGCCCGCCT--------------CCTAAA--------CCCCAGTGTACGTGAGACNTGTGGTTGTGTTTATGGGGAGTGGAGANGGGAANGAGNGGTGATTCTGTCTCTGAATAACAGGATCACAAACCCATTTTTTTTCTCTGATCTCTCTGCAt s panTro1.chr19 81167346 153 + 82489036 CCATGGAAGAGGCCCGGTGTCGTCCGCCCGCCT--------------CCTAAA--------CCCCAGTGTACGTGAGAC-TGTGGTTGTGTTTATGGGGAGTGGGGAGGG--AAGAG-GGTGATTCTGTCTCTGAATAACAGCATCACAAACCCATTTTTTTTCTCTGATCTCTCTGCA- s canFam1.chr18 30361087 164 + 66173745 CCACAGAAGAGCCAC---CTTGTCTACACACCTGTGCAAATTCTAGGGCTAAAAACGCTTTCTTGAGCACATGAGAAAC-TGTGACTGAGTTTG-AAGCAGGGGAAAGGC--AGCGG--------CTACTACCAAGCAATAGGGCTAC-CACTCCTTTTCCCTTTCCAGTCCCTTTACAT a score=-31.0 s hg17.chr17_random 1912700 1 + 2618010 C s rn3.chr10 109972740 1 + 110733352 T a score=25105.0 s hg17.chr17_random 1912858 280 + 2618010 tttcttttttcttttgacacaggggctcactctgttacccagctggagggtagtggcagaatcttggctcactgcagcctccacccactgggctcaagcaatcttcccaacctcagcctcctgagtatctggggtacagatgcacgctaccacacccagctcatttttgtatttattgtagagacggggttttgccacgttgccca-ggctggtctttaactcctgtgctcaagcagtttgcccaccacgacttcccaaagtgctgggattacaggcatga s panTro1.chr19 81167499 275 + 82489036 ------ttttcttttgacacaggggctcactctgttacccagctggagggtagtggcagaatcttggctcactgcagcctccacccactgggctcaagcaatcttcccaacctcagcctcccgagtatctggggtacagatgcacgctaccacactcagctcatttttgtatttattgtagagatggggttttgccatgttgcccagggctggtctttaactcctgtgctcaagcagtttgcccaccacgacttcccaaagtgctgggattacaggcatga a score=53428.0 s hg17.chr17_random 1913138 600 + 2618010 gccaccaatcccagccCtttttttttt-cttggaagacagggtcttgctctgtcacccaggttagagtgcagtggcatgatcatggctcactgcaacctcgaacttctgggctcaagcaatcctcctacctcaggctcccaagtagctgggaccacaggcatgtgccaccacacccaactaacttttttttttt-----tttttttttgaggcggagttttgctcttgttgctcaggctggagtgcaatagtgtgatctcggctcactgcaacnctccacctcccgggttcaagcaattctcctgcctgaccctcccgcgtagctaggattataggtgcccgccaccacacccggctaatttttgtatgtttagcagagacagggttccccat----gttggccaggctggtctcactcctgacctcaggtgatacacctgcctcagcggtctcccaaagtgctaggattacagaggtgagccactgcgcccagcAATGtttcttcttttttttttttttttttgagacggaatctacctctgtcgtccaggctggagaatgcagtggcgccatcctggctcactgcaacctccatctcccaggttcaa-g s panTro1.chr19_random 1235962 608 - 57627672 gccaccaatcccagccctttttttttttcttggaagacagggtcttgctctgtcacccaggttagagtgcagtggcatgatcatggctcactgcaacctcgaacttctgggctcaagcaatcctcctacctcaggctcccaagtagctgggaccacaggcatgtgccaccacacccaactaactttttttttttctttttttttttttgaggcggagttttgctcttgttgctcaggctggagtgcaatagtgtgatctcggctcactgcaac-ctccacctcccgggttcaagcaattctcctgcctgaccctcccgagtagctaggattataggtgcccgccaccacacccagctaatttttgtatgtttagcaaaaacagggttccccatccatgttggccaggctggtctcactcctgacctcaggtgatacacctgcctcagcggtctcccaaagtgctaggattacagaggtgagccac--cgcCCAGCAATGtttcttcttttttttttttttttttgagacagaatctacctctgtcgtccaggctggagaatgcagtggcgccatcttggctcactgcaacctccatctcccaggttcaatg a score=63252.0 s hg17.chr17_random 1913738 716 + 2618010 tgattctcctgcctcggcctcccaaatagctggtattacanggcgcccgccaccatgcccagctaatttttgtatttttagtagagacggggtttcactgtgttggccaggctggtcttgaactcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacatgcgtgagccaccatgcccggcncnaatttttctattttttgtagagatggggttttgccacgttgcctaggatggtctcaaactcctgggattaagcagtccgcccacctcggccttccaaagtgctgggattaccgggnatgaaccactgtgccc-agccctagctaatttttgtattttttgtagacagggtttcaccatgttgcccaggatggccCTCTGCATTTTAAAAAttttattttttgaaacgaagtctcactctgtcacccaggctggagtgcggtggcacgatctcagctcactgcaaccttacctcccaggttcaagggattctcctgtgtcagcctcccaagtagctgggattacagacgtgcaccaccacgcccggctaatttttgtatttttagtagagacgggggtttncaccatattggccatgctggcctcgaactcctgacctcaggtgatccacccgtctcagcctcccaaagtgctgggattacaggcatgagccaccgcacccagccTGTCCTCTGCGTTA s panTro1.chr19 81168374 711 + 82489036 Tgattctcctgcctcggcctcccgaatagctggtattaca-ggcgcccgtcaccatgcccagctaatttttgtatttttagtagagaccgggtttcactgtgttggccaggctggtcttgaactcctgacctcgtgagccgcccgcctcagcctcccaaagtgctgggattacacgcgtgagccaccatgcccggcc--aatttttctattttttgtagagatggggtttcgccacgttgcctaggatggtctcaaactcctgggattaagcaatccgcccacctcggccttccaaagtgctgggattaccggg-atgaaccactgtgcccCAGAcctagctaatttttgtattttttgtagacagggtttcaccatgttgcccaggatggccCTCTGCGTTTTTAAAAttttattttttgaaacgaagtctcactctgtcacccaggctggagtgcggtggcacgatctcagctcactgcaaccttacctcccgggttcaagggattctcctgtgtcagcctcccaagtagctgggattacagacgcgcaccaccatgcccggctaatttttgtatttttagtagagacgggg--tttcaccatattggccatgctggcctcgaactcctgacctcaggtgatccacccgtctcagcctcccaaagtgctgggattacaggcatgagccaccgcacccagccTGTCCTCTGCGTTA a score=1694.0 s hg17.chr17_random 1914454 7 + 2618010 TCTAAAT s panTro1.chr19 81169085 7 + 82489036 TCTAAAT s rn3.chr10 109972809 7 + 110733352 TCCAAAT a score=43900.0 s hg17.chr17_random 1914461 423 + 2618010 TTTCTTTGACATGTACATCCATCAAACACATGTTCTCACCCAGGAGTCTGACA------------GCAG-GCCTCA-TTTTAGAGAGGTGGACAGTAACTC--AAAACTCAG-----TGCCAGTTTTCTACCTCTGGGAACAGGCTGACGCCCCGCCCACCT--GACTCCCGCGCCTCCTAACTTATCCCAGGCGTTTCGGGAGTTCTCGC---------CAATGGCCCACCCTCCATGCCTCCC---------AGACCAGGAAGAA-----GATGACACANCTTTTATGCCACCAAAGGCGGTCA-ACTGACAGGAAAGAAA-----CTTCCTCCTCCTGGGAGACTGAGGCTAAGGAATGATGCCTCTCCTTTTTCCCTCCTAGAACTTGACTCCCTGGTCCGAATCGGGAAAACCC-----CATTCAGATGTAGAAGGATTCCACC--AGTGCTA----ACAAGACGGTCACCAGTGACAAGT s panTro1.chr19 81169092 422 + 82489036 TTTCTTTGACATGTACATCCATCAAACACACGTTCTCACCCAGGAGTCTGACA------------GCAG-GCCTCA-TCTTAGAGAGGTGGACAGTAACTC--AAAACTCAG-----TGCCAGTTTTCTACCTCTGGGAACAGGCTGACGCCCCGCCCACCT--GACTCCCGCGCCTCCTAACTTATCCCAGGCGTTTCGGGAGTTCTCGC---------CAATGGCCCACCCTCCATGCCTCCC---------AGACCAGGAAGAA-----GATGACACA-CTTTTATGCCACCAAAGGCGGTCA-ACTGACAGGAAAGAAA-----CTTCCTCCTCCTGGGAGACTGAGGCTAAGGAATGATGCCTCTCCTCTTTCCCTCCTAGAACTTGACTCCCTGGTCCGAATCAGGAAAACCC-----CATTCAGATGTAGAAGGATTCCACC--AGTGCTA----ACAAGACGGTCACCAGTGACAAGT s rn3.chr10 109972816 390 + 110733352 TTCCTTGAACACTAATGTTCATTCAGTTCAGGTACTCCTACAGTACACATACA--------------AG-GCTACGCCCCTAGAAATGTGG--GGTTAGTC---AACCTTAG-----TGCTAGCTCTATAGTCCCAAAACAGGACTG-----------ACTT--GACTCTGACACCT------------CAGGTGGGCCAGGTGTTCCTGT---------CTGGAACTTGCCCTACCCACTTCCCTGGTGGATAAGAACTGGAAAAG-----TATTGTATG-CTTGAGTGCTAGTCAAAGCAGACACAGTGAGGAGAAAGTGAGCCTGTTCCCTCCTTATGGGA----GAGGCTGATAAAAGAGCCCT----------TCTCCT-GGACTGGGCCATTTGGACTAATCAAGGTATGTCT---AACATGCA-ATTTACCAAGATTC--------TGGTA----ACAGTTTGGTGACAAGAAACCGGT s canFam1.chr18 30361259 433 + 66173745 TTTCCCGGTCTTTCAAACTCATTAAACACACACTTTCCCCCGGTGGCCTCATTCATCATAAAGATGCAGTGCAACT-TTTTAAAAAGGGGAAAAAAAAGGCTGGAAAGTCAGATGAACACCAGCTTTC--CCTGTGACAACAGGCTGAGCAACAGCTGGCCTTGGGCATCCAGGCCA----------CTCAGG-----CAGGTGTCCCTGTCTGTGGCTGCTGTGGCCTACTACATGTGCCTCCC---------AAACTAGGGAGGGAGCGTGATCATGCA-CCTGCGTGCCAC--AGGGCAGACCGAACGAAGCGCTAGGAG-----CCTGCTCCTCCTGAGA--CTGAGGCCAGTCACCGG---------------TCCCCT-CAGTTTGGCTCGCTGGTCCAACGCGAGAAAGGTTGTGAAAGCTCACACTTAAAAAGGATTCTCCTAAGTGGCAGTTCAAAGCTGAGTCATCAGTTACAAGT a score=17919.0 s hg17.chr17_random 1914884 109 + 2618010 GGATTTAGGAGTGCTCATCTCATCTGCAAACCTGAGTGTTAGTGACAGAACCACGGTGACTTTGGACAGAGCACTTCCCGTTCCAAAAGTGAACATGAGTAAAAAATGA s panTro1.chr19 81169514 109 + 82489036 GGATTTAGGAGTGCTCATCTCATCTGCAAACCTGAGTGTTAGTGACAGAACCACGGTGACTTTGGACAGAGCACTTCCCGTTCCAAAAGTGAACATGAGTAAAAAATGA s canFam1.chr18 30361692 100 + 66173745 GGAATTAGGAGTAGCTGTTTTGTTCTCAAAGCTACGTGTCAGCGACGGGATCGTGACAACTCT-------GCGCTTCCTGTTCCACAAGTGAACGTGGG--AACAATGA a score=24807.0 s hg17.chr17_random 1914993 291 + 2618010 GAACATCAAtcacgcctgtaatcctagcactctaggaggccgagacgggtggatcacgaggtcacgatcgagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggtgcacacctgtagccccagctactcaagaggctgaggcaggagaatcacttgtacccgggaggcagaggttgcagtgagcagagatcgcaccactgcac----------gacagagcgagactgtctcaaaaaaaaaaaaaaaaaaaaaaaaaggaaaCATC s panTro1.chr19 81169623 296 + 82489036 GAACATCGAtcacgcctgtaatcctagcactctaggaggctgaggcgggcggatcatgaggtcacgatcgagaccatcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccaggcatggtggtgcacatctgtagccccagctactcaggaggctgaggcaggaaaatcacttgtacccgggaggcagaggttacagtgagcagagatcgcaccactgcacttcagcctgggacagagcgagactgtctcaaaaaaaaaaaaaaaaaaaa-----ggaaaCATC a score=2672.0 s hg17.chr17_random 1915284 27 + 2618010 AAAACAGCCAAGTGAGAGGCA-ACCACA s panTro1.chr19 81169919 27 + 82489036 AAAACAGCCAAGTGAGAGGCA-ACCACA s canFam1.chr18 30361792 23 + 66173745 ACAGCAGCC---TAAGATGCAGACCA-- a score=5111.0 s hg17.chr17_random 1915311 18 + 2618010 GAGCTGCTGCCACTAGAA s panTro1.chr19 81169946 18 + 82489036 GAGCTGCTGCCACTAGAA s rn3.chr10 109973410 18 + 110733352 GAGTTGCTGGGATTAAAA s canFam1.chr18 30361815 18 + 66173745 GAGTCACCGGCGTCAGGA a score=0.0 s hg17.chr17_random 1915329 72 + 2618010 CAGGACAGGGCACACCTGCTTAAGGGGACAAAAGGAAACATCAAAACAGCCAAGTGAGAGGCAACCACGGAG a score=5566.0 s hg17.chr17_random 1915329 47 + 2618010 CAGGACAGGGCACACCTGCTTAAGGGGACAAAAGGAAACATCAAAAC s panTro1.chr19 81169964 47 + 82489036 CAGGACAGGGCACACCTGCTTAAGGGGACAAAAGGAAACATCAAAAC s rn3.chr10 109973428 41 + 110733352 AAG--CATGCCACTACTACCTAGGTAGGAAAAAAAAA----CAAAAC a score=2279.0 s hg17.chr17_random 1915376 25 + 2618010 AGCCAAGTGAGAGGCAACCACGGAG s panTro1.chr19 81170011 25 + 82489036 AGCCAAGTGAGAGGCAACCACAGAG a score=22135.0 s hg17.chr17_random 1915401 229 + 2618010 TTGCTGCCACTAGAACAGGACAGGGCACACCTGCTTAAGGGGAGAANCCCTGCTAACACTGGAATGAGCTGCTTTCGGGCTACCCANCATGAGCATCTGACATGCCACAGAACCGGNTTTATAGAC-GAGTTTTCNTTTGCCACCGTCACTGATCTGGCTACACAGGGGCTCGGCCTCCACTACGGCAGCTTCAGAGGCGGCAGACGAGCAGCTGAGGGCCCGTGCTACA s panTro1.chr19 81170036 228 + 82489036 CTGCTGCCACTAGAACAGGACAGGGCACACCTGCTTAAGGGGAGAA-CCCTGCTAACACTGGAAAGAGCTGCTTTCGGGCTACCCACCGTGTGCATCTGACATGCCACAGAACCGGTTTTATAGAC-GAGTTTTCTTTTGCCACCGTCACTGATCTGGCTACACAGGGGCTCGGCCTCCACTACGGCAGCTTCAGAGGCGGCAGACGAGCAGCTGAGGGCCCATGCTACA s canFam1.chr18 30361833 149 + 66173745 TTGCTGCT-CCAGAGCG--------------TTCTGACAGGGA------------------------------------------------------------GCTACAGAACCGGTTCTATAGACAAAAGTTTCTCCTCTCGTCATTACCTAT-GAGCCACAGCGCAGCCCAGCCCCCAGGA-GGCAGCCCCAGAGGTGGCC-ACGAG-GGCT--GGGCTCGTGCGGCA a score=0.0 s hg17.chr17_random 1915630 57 + 2618010 GACggagcagggcgggcttggattcgaggtctgctaccgacaggctcgatgctgtta a score=1351.0 s hg17.chr17_random 1915630 15 + 2618010 GACggagcagggcgg s panTro1.chr19 81170264 15 + 82489036 GACGGAGCGGGGCGG a score=4766.0 s hg17.chr17_random 1915645 42 + 2618010 gcttggattcgaggtctgctaccgacaggctcgatgctgtta s panTro1.chr19 81170279 42 + 82489036 GCTTGGATTCGAGGTCTGCTACCGACAGGCGCGATGCTGTTA s rn3.chr10 109974403 28 + 110733352 GCTTGGATTTGCATTCGGTCACCA--------------GCTA a score=2523.0 s hg17.chr17_random 1915687 43 + 2618010 ctcagctgctctaagcctcagccctttgtctgggaaaagcccg s panTro1.chr19 81170321 43 + 82489036 CTCAGCTGCTCTAAGCCTCAGCCCTTTGTCTGGGAAAAGCCCG s rn3.chr10 109974431 27 + 110733352 CTAGAATGTTCTAA---------------CTATGAAAGGGTC- s canFam1.chr18 30361982 26 + 66173745 CCCAGCTG------------GCCTTGCGTCTG-----AGCTCG a score=0.0 s hg17.chr17_random 1915730 15 + 2618010 cctcacagagaggat a score=2381.0 s hg17.chr17_random 1915730 13 + 2618010 cctcacagagagg s panTro1.chr19 81170364 13 + 82489036 CCTCACAGAGAGG s rn3.chr10 109974458 13 + 110733352 CCTAAGGGAAAGG a score=273.0 s hg17.chr17_random 1915743 1 + 2618010 a s panTro1.chr19 81170377 1 + 82489036 A s mm5.chr11 120242258 1 + 121648857 A a score=0.0 s hg17.chr17_random 1915743 1 + 2618010 a a score=546.0 s hg17.chr17_random 1915744 1 + 2618010 t s panTro1.chr19 81170378 1 + 82489036 T s mm5.chr11 120242259 1 + 121648857 T s rn3.chr10 109974471 1 + 110733352 T a score=39137.0 s hg17.chr17_random 1915745 383 + 2618010 gcgaggagaaatcacgcaagcacgtgacgcggcagctggcacgcTACACACGACAGCTAGCAGGTGTCACCCCGAGAGCTACAGCCATGCT----------GCTGC--TCCTAGGNAACAGGG------GGCAGCACAAACAG--------CCCATGTGGCCAGAAAGGCACCAGTC--NTCCCTCTCCTCGCTGGTCAGTCTCCAAACAGACCTCAGCCAGCCGCC--CCCAGGATGGCAC--CAGACAAGACAG--GTTCTCCATTCGAAGGTTCTTCCAGGA--TGAAAACT--CCTCACA-AGACCCTCAGGGCACAAGTGGACAGAGAACCCGGCCTGAGGAACGGGATCCCTCCAAGCCTCTGGAACCCGGCCTCCCCACCGCTCAGAC-----------AGCTGCCCCTGCCCTTCCAAGTCGGCA s panTro1.chr19 81170379 383 + 82489036 GCGAGGAGAAATCACGCAAGCACGTGACGCAGCAGCTGGCACGCTACACACAACAGCTAGCAGGTGTCACCCCGAGAGCTACAGCCATGCT----------GCTGC--TCCTAGG-AACAGGG------GGCAGCACAAACAG--------CCCATGTGGCCAGAAAGGCACCAGTC---TCCCTCTCCTCGCTGGTCAGTCTCCAAACAGACCTCAGCCAGCCGCC--CCCAGGATGGCAC--CAGACAAGATAG--GTTCTCCATTTGAAGGTTCTTACAGGA--TGAAAACTTTCCTCACA-GGACCCTCAGGGCACAAGTGGACAGAGAACCAGGCCTGAGGAACGGGATCCCTCCAAGCCTCTGGAACCCGGCCTCCCCACCGCTCAGAC-----------AGCTGCCCCTGCCCTTCCAAGTTGGCA s mm5.chr11 120242260 358 + 121648857 GCAGTGAG-AATCATG--AATACCTGGCCTGGTA-CTGACACCCTGTGAGTGACAGCTACAAAGCGTCA-CCCAAGTGTCACGCCTACACTATCTGGAAGCACTGCATTCCTGGA-----------------AGCACCAATAGTTCAAAGCCCCGTGTGTTGAGCAAAGCACTTGCC---TCCTCCTCCTCATTGGTCAATCACCAGATAA--CTCAGCCAGCAGGCTACTCAGGTCATCA---CAGATGTGACA------CTTCCTGTGAAG--TACTCCAAAG--GAGGAACTTTCCCCA----GCTCCCACATGCAAGAGTTGATATAGAACCCA--CTTGAGAACAGGGCCTCTCCCTGCCTTT-----------TTTCCCCCACCTGTGG-----------GTTTGCTCC-------CAAAGCCTACA s rn3.chr10 109974472 385 + 110733352 GCAGTGAGAAATCACG--AATGCTTGGCCAGGTG-CTGACACACTGTGAGTGACAGTTACAAAGCGTCA-CCCAAGTGTCACGCCTACACT-----------------CTCTGGA-AGCATTGCATTCCTGAAGAACCAATAGTTCAAAGCCCCGTGTGTTCAGTGGAGCTCTTGCCTCCTCCTCCTCCTCATTGGTCAATCACCAGATAAGCCTCAGGCAGCGGGCTACTCAGGAGGTCATCACAGCTGTGACA------CTTCCTGTGAA---TACTCCAAAG--GGGGAACTTTCTCCACATAGCTCTGAGATGCAAGAGTTGGTATAGGACCCA--CTTGAGAGAAGGCTCTCTCTAAGCCTCTGAGAAGG----TTCCTACTTCTAAGACTTACTTTCTGGTTTTGCTCC-------CAAAGCCTA-- s canFam1.chr18 30362008 256 + 66173745 ----------GTGACA--GGTGACTGACGCCGG--CTGGCACACC-----------------TGGGTTA--------GCTACACCT---------------GTTGC---------------------------------------------TCTGTGAGGTCCCAGGGGCCCCAGCC---CTTCTCTCCTCA-GGGTCAATCGTAGGACCAGCCTCAGCTTGCTATC------------CAC--CCCAAAAGGCTGCCCTCCTCCACCCAAAAGATTCTGCAGGGATTGGGAATACTCCTCCCGGGAGCCGGAGAGGCCGGACTGGACCGAGGAC--------------AGGGCCCCTC-----------------------CTGCCCCTCAGGT-----------A-----CCCTG-----CGCGGCCTG-- a score=5873.0 s hg17.chr17_random 1916128 46 + 2618010 GGCCAGTCCCTCTCTAAAGACAGTTCAAGGGCAGTGCCACAGCCAC s panTro1.chr19 81170762 46 + 82489036 GGCCAGTCCCTCTCTAAAGAGGGTTCAAGGGCAGTGCCACAGCCAC s mm5.chr11 120242618 29 + 121648857 ---CAGTT--------------ATTAAAGGGCAGTTCTAGGGTCAC s rn3.chr10 109974857 29 + 110733352 ---CAGCC--------------ATTAGAGGGTAGTGCTAGGGTCAC s canFam1.chr18 30362264 29 + 66173745 ---CAGGC--------------ACTTAGGGGCAGTGTGGCGGCCGC s galGal2.chr1 67296625 44 + 188239860 GACCAGTGCATTTCTTCAGCCAACTGACCATCTGGTTCTCTG--AC a score=339526.0 s hg17.chr17_random 1916174 208 + 2618010 ACCTGTATATTCCTTGGGGGAAGCCGTGTCTCCATTCCTGAAGAACTTGATGGTGGGATAGCCGCGCACGCCGTACTGCTGGGCCAGGTCAGACTCCTCCGTGGCGTCCACCTTGGCCAACCTGATCTCGGAACCTTCTGCCTTCAGCTTCCCAGCGGCTTTGGCATACTCAGGGGCCAGAGCCTTGCAGTGGCCACACCAAGGGGCA s panTro1.chr19 81170808 208 + 82489036 ACCTGTATATTCCTTGGGGGAAGCCGTGTCTCCATTCCTGAAGAACTTGATGGTGGGATAGCCGCGCACGCCGTACTGCTGGGCCAGGTCAGACTCCTCCGTGGCGTCCACCTTGGCCAACCTGATCTCGGAACCTTCTGCCTTCAGCTTCCCAGCGGCTTTGGCATACTCAGGGGCCAGAGCCTTGCAGTGGCCACACCAAGGGGCA s mm5.chr11 120242647 208 + 121648857 ACCTGTATATTCCTTTGGGGAGGCTGTGTCTCCATTCTTGAAGAACTTGATTGTGGGGTAGCCACGGACACCATACTGCTGAGCCAGGTCAGACTCTTCTGTGGCATCCACCTTTGCTAGTCGAATCTCAGAGCCTTCTGCCTTCAGTTTTGCGGCAGCTTTGGCATACTCGGGAGCCAGAGCTTTGCAGTGGCCACACCACGGGGCA s rn3.chr10 109974886 208 + 110733352 ACCTGTATATTCCTTTGGGGAGGCTGTGTCTCCATTCTTGAAGAACTTGATTGTGGGGTAGCCACGGACACCATACTGCTGGGCCAGGTCAGACTCTTCTGTGGCGTCCACCTTTGCTAGTCGGATCTCAGAGCCTTCTGCCTTCAGTTTTGCAGCAGCTTTGGCATACTCTGGGGCCAGTGCTTTGCAGTGGCCACACCATGGGGCA s canFam1.chr18 30362293 208 + 66173745 ACCTGTGTACTCCCTGGGAGCAGCCGTGTCTCCGTTTTTGAAGAACTTGATCGTGGGATAGCCACGGACCCCGTACTGATGGGCCAGATCAGACTCTTCGGTGGCATCGACCTTTGCCAGCCTGATCTCCGAACCTTCTGCCTTCAGTGTCCCGGCGGCTTTGGCGTACTCGGGGGCCAGAGCCTTGCAGTGGCCGCACCAAGGGGCG s galGal2.chr1 67296669 202 + 188239860 AGCTGTGTACTTCTTGGGTAAGGCCTTGCCCACATTGCAGAAGAACTTGATGGTGGGGTACTCACATACACCTAAGTTCTGCACCAGCTCTGACTCCTCGATGGTGTCCACCTCATCCAGGTGGATATCGGATCCTTCCACCTTCAGCTTTAC--CATCT----CATACTCAGACGCCAATGCCTTGCAGTGCCTGCACCATGGGGCA s fr1.chrUn 128693941 208 + 349519338 ACCAGAGTACTCTTTTGGAGAATCTTTATCTCCTCCTTTGAAAAATTTGATGGTGGGGTATCCTCGGACTCCAAACTCTTGGGCTAGGTCCGTCTCCTCTGTGGCGTCCACCTTTGCCAGGCGCACTTCAGAACCCTCTTCCTTTAGCGTGGCAGCAGCCTTTGCGTACTGGGGAGCCAGGGCGTTGCAGTGACCACACCATGGGGCA s danRer1.chrUn 46029208 208 + 367113659 ACCAGAATACTCCTTAGGGTTCCCTTTCTCTCCTCCCTTGAAGAACTTGATGGTGGGATACCCACGAACACCAAACTCCTGAGCAAGTTCTGATTCTTCTGTAGCATCTACCTTAGCTAGTCTGATATCTGAGCCTTCAGCTTTTAGCATTCCAGCTGCTTTGGAATATTCAGGGGCCAAGGCCTTGCAGTGTCCGCACCATGGTGCA a score=6319.0 s hg17.chr17_random 1916382 7 + 2618010 TCTGGA----------A s panTro1.chr19 81171016 7 + 82489036 TCTGAA----------A s mm5.chr11 120242855 7 + 121648857 TCTGTA----------A s rn3.chr10 109975094 7 + 110733352 TCTGTA----------A s canFam1.chr18 30362501 7 + 66173745 TCTGGA----------A s fr1.chrUn 128694149 17 + 349519338 TCTGCAGGGTGCGAGCA s danRer1.chrUn 46029416 7 + 367113659 TCTGCA----------A a score=11555.0 s hg17.chr17_random 1916389 24 + 2618010 GCGGAAATGAGATGCTAGAAAGCA s panTro1.chr19 81171023 24 + 82489036 GCGGAAATGAGATGCTAGAAAGCA s mm5.chr11 120242862 24 + 121648857 AAGAAACCAGGACATTGGAAGGTA s rn3.chr10 109975101 24 + 110733352 AAGAAACCAGGACACTGGAAGGCA s canFam1.chr18 30362508 24 + 66173745 GAGCAAGCGGGGTGCTAGGAAGCA s fr1.chrUn 128694166 23 + 349519338 AAGACATCAGTGC-CTAGGGAGCA a score=111285.0 s hg17.chr17_random 1916413 576 + 2618010 GCCTTGATCCCTAAAGCAGCCTTGATCCCTCAGCAGTGCTTCCCT--TTTTCCTCTG-GCATTTCCCTTCATAAAAACCTTATCTACTCACCAAGATAACCCCTCCT-AACG----CACAAGGCTGAGCTGATAGCCTGGTGTTCTTGGGCAATATCAGGACAGAGGCCGNTGAACGACAAACTACCACCNAACCAACACCAGCCCCCACTC----TGCTATGTCACCATCAGCACAGCCAGACAAACCTTTCAATGGTTGCTGACTTCTTATTCCCCACAGGCAACTAAGGCAAGGATCTCCCCTAGACNTTTCCCTTTAAGACTACAGACAAAAGTGAAGAAGTGACCGTGGCGG--CCTGTACCAGCA-------CTAGCTGT---GAGTATG-----AGATGCACATCCGTGCA--CACAGACCCTGAGTTGCTTAGGGTGAGAATAAGACGATCTGTCAATA-GAGTTAGCAGCNTGTGTCAGGCACAAGGTTCCCACCC------CAGGGACAGAGCTCAAATCCTTATGGACGTGAG-GAAGGCTTG-----GGATTCTCCTCTGAGACACCATCGGAAGGACTGCTG----TGGCAAGCTGAAGGTGGGGTGGGCA s panTro1.chr19 81171047 572 + 82489036 GCCTTGATCCCTAAAGCAGCCTTGATCCCTCAGCAGTGCTTCCCT--TTTTCCTCTG-GCATTTCCCTTCATAAAAACCTTATCTACTCACCAAGATAACCCCTCCT-AACG----CACAAGGCTGAGCTGATAGCCTGGTGTTCTTGGGCAATATCAGGACAGAGGCCG-TGAACGACAAACTACCACC-AACCAACACCAGCCCCCACTC----TGCTATGTCACCATCAGCACAGCCAGACAAACCTTTCAATGGTTGCTGACTTCTTATTCCCCACAGGCAACTAAGGCAAGGATCTCCCCTAGAC-TTTCCCTTTAAGACTACAGACAAAAGTGAAGAAGTGAACGTGGCGG--CCTGTACCAGCA-------CTGGCTGT---GAGTATG-----AGATGCACATCCGTGCA--CACAGGCCCTGAGTTGCTTAGGGTGAGAATAAGACGATCTGTCAATA-GAGTTAGCAGC-TGTGTCAGGCACAAGGTTCCCACCC------CAGGGACAGAGCTCAAATCCTTATGGACATGAG-GAAGGCTTG-----GGATTCTCCTCTGAGACACCATCGGAAGGACTGCTG----TGGCAAGCTGAAGGTGGGGTGGGCA s mm5.chr11 120242886 484 + 121648857 GT-----------------CCTCTATCCA--------GGTCTATT--TCTTCCCTTT-GTACTTCCTTTCATAAAAACCTTATCAGCATACCAAGATAACCCCTCTT-AATGCAGTCAAGAGACTGCACTGATAG-CTGGTGCTCTTGGGCAATATGAGGACAGAGGCCA-CGAGTGACA-----------AACCAACCCCAATCCCTACTT----TGCCCTGTGACCACCAGCACTGTAAAATCATCCT-----TGACTTGTAACTTCGTACTGCCCCCA-GCAATCAGGGTCAGTGTATACCTGGGG--TTTACCACTCAGAATCTAGG-AAAAGTTAAAAGGTTG------------CTGGGCCAGCA-------CTATATGTAGCAAGTACGTGTCCAGATGCCTATC--------CAAAG---CTGTTCTTTCTACTATGGGAATGTGACAATCTGTCAAGGCAACCTGGCAGC-TGTGT--------------------------------TGGAGCTCACACACTTGTAAGCAGAAGTAAAGGCTTAGATCTGGCTTGCTTCCCGGTATAC----------------------GGCAAGTTACAGGTAGGGTGGGCA s rn3.chr10 109975125 489 + 110733352 GT-----------------CCTCCATCCA--------GGTCTATT--TCTTCCCTTT-GTACTTCCTTTCATAAAAACCTTATCAGCACACCAAGATAACCCCTCTT-AACGAATATAGGAGACTGTGCTGATAG-CTGGTGCTCTTGGGCAATATCAGGACAGAGGCCA-CAAGTGACA-----------AACCAACCCCAATCCCTACTT----TGCCCTGTGACCACCAGCACTGCAAAATAATCC------TGACTTGTAACTTCCTACTGCCCCAA-GCAATCAGGGTCAGTGTATCTTTAGGA--TTTACCACTCAGAATCTAGG-AAAAGTTTAACAGTTG------------CTGGCCCAGCA-------CTATACCT---AGCAAGA-----ACATGCCCAGATGCTGATCCAAAG---CTGTTCT-TCTAGTGTGGGAATGTGACAATCTGTCAAGT-AGCCTGGCAGC-TGCAT--------------------------------TGGGACTCACACTCTTGTAAGTAGAAGTAAAGGCTTA-----GGAT--CTGGCTGGCTTCCCGGCGAGGAGAATAC-------GCCAGGTAACAGGTAGAGTGGACA s canFam1.chr18 30362532 481 + 66173745 GCACTGA------------CCAAGTTCCACC------GCTCCCCTCACCTTCTTCTGCGCACTTCCTTCCATAAAAACCTTATCTACTCGCCAAGATAACCCCCTGTGAACG----CGCGGGGCTGAGCTGATAGCTCGATGCTCTTAGGCAATATCGGGACAGAGGCCA-CGAACGACA-----------GCGCCACACCAACCCCCGCCCCCCGCGCCCCGTCA----CAGCACGG---GACAAACTC-----CGG--GGGACCCTCCGAGCACCTGCAGGCGGCAAGGGCAGGGGCCCCTGC------GCTGGCCCGGGGAGCACAGG-----ACTAGGAGGCCGGCGCCGCGGCACCTGCACACGTAGCGAGACCCGGTCGT---GCGTGTG-----CGGGGCGGGT--GTGCA--CGCGG--CCTG-------------------ACGCCGCTGTGGCTCCG-GTGCTCGGGGC-GCCGG-----GCAGGGCCGCCGCTCAGCCGACCGGGGCGGCGCT-----------------------GGGCTCT-----AGGTTTCCGCCCGGGCC----------GGGCTGGTGATGCTGGCGGGCGGCACG------GGGCC a score=768.0 s hg17.chr17_random 1916989 38 + 2618010 GGAGCGGGGCGCCTTCCGGGTCGGCCCCCGGGGANGGA s panTro1.chr19 81171619 36 + 82489036 GGAGCGGGGCGCCTTCCGGGTCGGCCCCCGGGGAGG-- s mm5.chr11 120243370 24 + 121648857 -TAGTAAAGAGCGTTT--GATCTACTC----------- s canFam1.chr18 30363013 33 + 66173745 --GGCGGTGCGC---TGGGCTGGGTCCCCGGGGCAGGA a score=0.0 s hg17.chr17_random 1917027 42 + 2618010 NCTCGGCAAGGCTGGACACTGGCTTGCTCTGTTTGCTCACAC a score=1217.0 s hg17.chr17_random 1917027 28 + 2618010 NCTCGGCAAGGCTGGACACTGGCTTGCT s panTro1.chr19 81171655 28 + 82489036 ACTCGGCAAGGCTGGACACTGGCTTGCT s mm5.chr11 120243394 15 + 121648857 TATCGGAACTGCTAA------------- a score=5347.0 s hg17.chr17_random 1917055 14 + 2618010 CTGTTTGCTCACAC s panTro1.chr19 81171683 14 + 82489036 CTGTTTGCTCACAC s mm5.chr11 120243409 10 + 121648857 ----CTGCTCACAC s rn3.chr10 109975649 14 + 110733352 CTAACTGCTCACAC a score=11560.0 s hg17.chr17_random 1917069 257 + 2618010 AGGTCGATCCNTGTTCTTCTCGCACTAACAGGAAGATCCTGCCGTGCGCAGGGCGGGCATCGGGACGGCCCCCCGGNCTCCCAGCCCGGCTCTCACCCCCAGGGAGCCC---CTGACATGGCCCCCAAGGCGGGCAGCAAGGGAGCCCTT-------------------------------------------------CAGTTccgggcgcgccgg-----gggtcccg---------accccgggggctgc----------------------cgggccgTGC--------------------CTGCGTCCCA-----------AGAGCCTGGCTC---------------------------Agcggcccc------------------gagccccgcccgccc--gccaggcccg----gcgc s panTro1.chr19 81171697 255 + 82489036 AGGTCGATCC-TGTTCTTCTCGCACTAACAGGAAGATCCTGCCGTGCGCAGGGCGGGCATCGGGACGGCCCCCCGG-CTCCCAGCCCGGCTCTCACCCCCAGGGAGCCC---CGGACATGGCCCCCAAGGCGGGCAGCAAGGGAGCCCTT-------------------------------------------------CAGTTccgggcgcgccgg-----gggtcccg---------accccgggggctgc----------------------cgggccgTGC--------------------CTGCGTCCCA-----------AGAGCCTGGCCC---------------------------Agcggcccc------------------gagccccgcccgccc--gccaggcccg----gcgc s mm5.chr11 120243419 362 + 121648857 AGCCCACTC--TGTTTTTCCCA-GCTAACAGAAGGTTCTGGCCATGTGGACGTCGTGCACAAAGATACCTTCTTGA-TTCTCAATCCCGCAGTCCCCCTCAATGAGCTCTGACTACAACGACTTCTACTTTGGGTAGGAAGGATGCTCTTGGGACAACTGGAAGCAGAGAAGCTTACAGTAGGTGCTACCCGCGAGGTGCAGCTCTGGACCGGCCAGTC--CGTGTTCCGTGGGGC---AAGCTGAGGGCTACGGGCCACCGTACTCAAGAGGGGCCGGCCGCGC-----AGGAC------AGTGCTGGGTGCCGC----------AGAGGGCGGCCC---------------------------GGAGGAGTC--------CGTGGACAAGGGGCCCTTCCCCCCCCGCCCAGGCCCACGGCGCAC s rn3.chr10 109975663 361 + 110733352 AGCCCATCC--TGTTTTCCCCG-GCTAACAGAAGGTTCTGGCCATGTGGAAGTAGTGCACAAAGACACCTTCTTGA-TTCTCAGCCCTGCAGTCACCCTCAAGGAGTCCTTACTACAACGACTTCCAC-TTGGGTAGGAAGGATGCTCTTGGGAAAACTGG--------------------------------------GAACAGCGAAGCTGACAGTAGGTGTTACCCGCGAGGTGCAGCTCCGGGACCAGC----------------------CAGCCCGTGCTCCAAGGGGCAAACTGAGGGCTACGGGCCACCGTACTCAAGAGGGGCTGGCCACGCAGGACAGGGCTGGGTGCCGCCGAGGGCGGCCCTTAGTAATCTGTGGACAAGGGGCCCTCCCCGCCC-GGCCTGGCCCGCGGCGCAC s canFam1.chr18 30363046 145 + 66173745 GGGGCGCCC---------CCGGGACTGACA----------GCGGCTCGCGGGGCAG--------------CGTCGG-CGCGCGGCCC--------------GTGCATcc--------------------gcgggcggggag----------------------------------------------------------------------cgccgg-----------ca---------gccctgggggcccc------------------------------gc---------------------------------------------cctggccc---------------------------agcgccccc------------------gcgcccc-caggccc-ggcccggccggcg--gcAC a score=7236.0 s hg17.chr17_random 1917326 4 + 2618010 TCAC s panTro1.chr19 81171952 4 + 82489036 TCAC s mm5.chr11 120243781 4 + 121648857 TCAC s rn3.chr10 109976024 4 + 110733352 TCAC s canFam1.chr18 30363191 4 + 66173745 TCAC s fr1.chrUn 128695342 4 + 349519338 TCAC s danRer1.chrUn 46030743 4 + 367113659 TTAC a score=140246.0 s hg17.chr17_random 1917330 128 + 2618010 AGAACTCCACCAGCAGGTACTTGTGGGCCGCCAGCGCCTCCGCGAAGTTGCTTTTCCGCAGCACCAGGACGTGGTCCTCCTCCTCGGGG-------------------GCGTCGGCGCGCACCAGGGC------GGCCACGGCCAG-GCACAGC s panTro1.chr19 81171956 128 + 82489036 AGAACTCCACCAGCAGGTACTTGTGGGCCGCCAGCGCCTCCGCGAAGTTGCTTTTCCGCAGCACCAGGACGTGGTCCTCCTCCTCGGGG-------------------GCGTCGGCGCGCACCAGGGC------GGCCACGGCCAG-GCACAGC s mm5.chr11 120243785 134 + 121648857 AGAACTCCACCAGCAGGTACTTGTGCGCCGCCAGCGCCTCCTCGAAGTTGCTCTTCTTCAACACCAGGACGTTGTCCTCCTCCTCCAGG-------------------GCGTCGGCGCCCACCCTAGCCGCCCAGGCCAGGGCTAG-GCACAGC s rn3.chr10 109976028 134 + 110733352 AGAACTCCACCAGCAGGTAGTTGTGCGCCGCCAGCGCCTCTGCGAAGTTGCTCTTCTTCAGCACCAGGACGTTGTCCTCCTCCTCCAGA-------------------GCGTCGGCGCCCACCCTAGCCGCCCAGGCCAGGGCCAG-GCACAGC s canFam1.chr18 30363195 134 + 66173745 AGAACTCCACCAGCAGGTACTTGTGCGCCGCCAGCGCCTCCTCGAAGTTGCCCTTGTGCAGCACCAGGACGTGGTCCTCCTCCTccggg-------------------gcggcggcgcccgcgcgcgTGAGCGCGGCCAGGGCCAG-GCAGAGC s galGal2.chr1 67296872 149 + 188239860 AGAGCACAATGAGCAGGTGGTGGTGCATGGTGAGAGCCTCCTTGAAGTTGGAGACACGTAGCACTAGCATGCCACCCTCCTCCTCTGGGAGCTCCATGACAAGGCTGAGTGGTGGCACAAGACATGGCAG----CACCATGACCAC-ACACAGC s fr1.chrUn 128695346 120 + 349519338 AGAATTCAACCAGAATGTTAGGATGAGCTTTGAGAGCCTCGTCGAAGTTACTTTTCTTCAGCACCAGAACGTCATCTTCT----------------------------TCGGCGATTTCAGCCCGGCT------GGCCACAACCAGCGTACAGA s danRer1.chrUn 46030747 122 + 367113659 AAAACTCAACAAGGACATTTGGGTGAGCTTTCAGTGCCTCCTCGAAGTTACTTTTCTTTAATACGAGTACGTCTTCTTCCTCGGCAATT-------------------TCAGCCGCGCTCA---TAGC------GGCCAGTGC----GCACACA a score=2905.0 s hg17.chr17_random 1917458 5 + 2618010 AGAGC-- s panTro1.chr19 81172084 5 + 82489036 AGAGC-- s mm5.chr11 120243919 5 + 121648857 AAAGC-- s rn3.chr10 109976162 5 + 110733352 AAAGC-- s canFam1.chr18 30363329 5 + 66173745 AGAGC-- s fr1.chrUn 128695466 5 + 349519338 GGAGC-- s danRer1.chrUn 46030869 5 + 367113659 --ATCAA a score=13649.0 s hg17.chr17_random 1917463 18 + 2618010 GCGGCGCAGCATGTCGGA s panTro1.chr19 81172089 18 + 82489036 GCGGCGCACCATGTCGGA s mm5.chr11 120243924 18 + 121648857 ACGGCTCAGCATGTCGGA s rn3.chr10 109976167 18 + 110733352 ACGGCTCAGCATGTCGGA s canFam1.chr18 30363334 15 + 66173745 GCGGCGCAGCATGTC--- s danRer1.chrUn 46030874 18 + 367113659 AAATTTCAACATGTCAGA a score=123491.0 s hg17.chr17_random 1917481 280 + 2618010 CA--CGGATCAGGCGGGGCGCTTCGGTTGGCGCCGCCGGGACAGCGGGGGCGACGAGAGCGCGCGCCGGTCCCGGCCTCGCCTTTATAAATCCTGGGTccggggcgcgcctgc----ccccccngcccgcgcgcgctggccgcggcgcgcacgcgccgctggggcccg-ccTTCGATTGGCCGGCGGACTTCGAGGCTCGTCTTTGCCGCTCTCGGATTGGACACTCACACCAG-GCCTGGCCCCGGATTCGGAAACGCTCCTGAGTGCTCCCTGGCCTTCGTTCGGG s panTro1.chr19 81172107 279 + 82489036 CA--CGGAGCAGGCGGGGCGCTTCGGTTGGCGCCGCCGGGACAGCGGGGGCGACGAGAGCGCGCGCCGGTCCCGGCCTCGCCTTTATAAATCCTGGGTccggggcgcgcctgc----cccccc-gcccgcgcgcgctggccgcggcgcgcacgcgcccctggggcccg-ccTTCGATTGGCCGGCGGACTTCGAGGCTCGTCTTTGCCGCTCTCGGATTGGACACTCACACCAG-GCCTGGCCCCGGATTCGGAAACGCTCCTGAGGGCTCCCTGGCCTTCGTCCGGG s mm5.chr11 120243942 282 + 121648857 CGTCTGCAGCGGGCGGGGCAGTTGGGTTGGCGCCGCCGGGACAGCCAAGGCGACGAGAGCGCGCGTCGGTCCAGACCTCGCCTTTATAAATCCTGGGCCGGGGACGCGCCCACGCCTCCCCCT-CGCTGCGCGCGTCAGCCGCCGTGCGCATGCGCCCC---GCCGCGCCCTCCGATTGGCCAAGGAGCTGAGAGACCCGCCCTCGCCGTGCGGGGACTGGACACCCACTCAAG-GCTGGGCCACCAAGTCGACAAAGACCCGGAGGCCTTTC-GGTTCTTGCCTGGG s rn3.chr10 109976185 282 + 110733352 CGTCGGCAGCGGGCGGGGCAGCTAGGTTGGCGCCGCCGGGACAGCCAAGGCGACGAGAGCGCGCGTCGGTCCAGACCTCGCCTTTATAAATCCTGGGTCGGGGACGCGCCCACGCCTCCCCCT-TACTGCGCGCGTCACCTGCCGTGCGCATGCGCCCT---GCAGCGCCCTTCGATTGGCCGAGGAGCTAAGAGACCCGCCCTCGCCGGGCGAGGACTGGACACCCAGTCAAG-GCTGGGCCACGAAATGGGAAAAGACCCGGAGGCCTTTC-AGTTCTTGCCTCGG s canFam1.chr18 30363349 237 + 66173745 ----GGCAGCGGGCGCGGCGCTTCGGTTGGCGCCGCCGGGACAGC-GAGGCCACGAGAgcgcgcgccg---cccgccccgcccctataagcccgg--------------ccgc-----------cgccgcgc--------------gcgcgcccgcccg---ctcccg-cgcccgATTGGCTGGCGGGCTCCGGGGCCCGCCTCCGAGGCGCTCGGATTGGCTGCCCGCCCTGGCCCCCGACCCCGGATTCGGAATCGCCGTGGCCGCTGCCCTCGGCCTCGCCCGGG a score=23110.0 s hg17.chr17_random 1917761 78 + 2618010 ATTG-GCCGAG--GACCTCGCGC--TCGCT------------GTCTTTCTTAGCCTCTCATTGGCTCCCGACAAG--AACTTTTTC-TGCCTTGGCTT s panTro1.chr19 81172386 80 + 82489036 ATTGTGCCGAG--GACCTCGCGC--TCGCT------------GTCTTTCTTAGCCTCTCATTGGCTCCCGACAAG--AACTTTTTCCTGCCTTGGCTT s mm5.chr11 120244224 89 + 121648857 ATTG-GCCACG--GCGCGCGCGC--GCGCG--CACAAACCCAATGTCCCCCAGCGTCTGATTCGCTGGCGA-AAGCCAACTTTCTC-TTTCTGGACTT s rn3.chr10 109976467 91 + 110733352 ATTG-GCCACA--GTGCGCGCGC--GCGCGCGCACAAACTCTACGTTCCCCTGCCTCTGATTCGCTGGCGG-AGGCGAACTTTCTC-TTTCTGGACTT s canFam1.chr18 30363586 79 + 66173745 ATTG-GCCGAG--GAGCTCGCGC--TCGCA------------GTCTTCCCGGGCTCCTCATTGGCTCCCGG-GGGAGAACTTTCTC-TTCCTCGACTT s galGal2.chr3_random 652510 82 + 1636275 ATTG-GTCGCGTTGCGCTGGCGCCGCCGCC------------GTCCGTCATTGGCTCGGTGCGGCGCCCGAGGGGCCGCGCGGCTC-CCATTGGTc-- a score=1215.0 s hg17.chr17_random 1917839 3 + 2618010 CTA s panTro1.chr19 81172466 3 + 82489036 CTA s mm5.chr11 120244313 3 + 121648857 CTG s rn3.chr10 109976558 3 + 110733352 CTG s canFam1.chr18 30363665 3 + 66173745 GTG a score=164994.0 s hg17.chr17_random 1917842 295 + 2618010 ATTGGTGGCTTTCGCCTGCACCTTCCACGGGTCTGGAATGGCTGCCCCTTTCGGTAGCACGGACTCTGCGCCTCCTGATTGGCCAAGGGATGCGCGCA--CTCTGCGCGTTCCTT---CGTCGAACGTGGCAGTGGGGAGGAGTTCCCAGTTTAGGGGCGGAGCTGCGGCTGCGCTTCCGAAACCCCTCGTGTTGCATTCTGACTGGACCGCGTACCCA--ACTGGCACG---CCCCCCGGCCCC----------CGGACCGGAAGTTGGGGTGACGCAATTTCCGGCGCGCG--TGTCAAGCGTGCGGCGGCGGCC s panTro1.chr19 81172469 295 + 82489036 ATTGGTGGCTTTCGCCTGCACCTTCCACGGGTCTGGAATGGCTGCCCCTTTCGGTAGCCCGGGCTCTGCGCCTCCTGATTGGCCAAGGGATGCGCGCA--CTCTGCGCGTTCCTT---CGTCGAACGTGGCAGTGGGGAGGAGTTCCCAGTCTAGGGGCGGAGCTGCGGCTGCGCCTCCGAAACCCCTCGTGTTGCATTCTGACTGGACCGCGTACCCA--ACTGCCACG---CCCCCCGGACCC----------CGGACCGGAAGTTGGGGTGACGCAATTTCCGGCGCGCG--TGTCAAGCGTGCGGCGGCGGCC s mm5.chr11 120244316 291 + 121648857 ACTGGCGACTTTT-CCCACGCCTTCCACACGTCTGGAATGGCTGCGGCTTTCCGCTGCCCGGCCTC-GTGGCTCCTGATTGGTGGAGAGATGCGCGTA--CCCAGCCCGATTCTC---CGTCGAACGTGGCAGT-GGGCGGAGTCCCGGACCCCTGGGCGGGGCTACGCTTGCGCCTCCGAAGCCCCTCGTGTTGCATTCTGACTGGACCGCGTTTCCGT-ACTGGCACC---GCCCCCAAGTCT----------CCTCAAGGAAGCCAGG--GACGCCACTTCCGGTGCGCG--TGCGGCTCGTGCGGTCCCTGCC s rn3.chr10 109976561 292 + 110733352 ACTGGCGACTTTT-CCCACGCCTTTCACACGTCCGGAATGGCAGATGCTTTCCGCTGCCCGGCCGT-GTGGCTCCTGATTGGCCGAGAGATGCGCGTA--CCCAGCGCGATTCTC---CGTCGAACGTGGCAGT-GGGAGGAGTCCCGGGCCTTTGGGCGGAGCTACGCCTGCGCTTCCGAAGCCCCTCGTGTTGCATTCTGACTGGACCGCGTTTCTGT-ACTGGGACC---GCCCCCAAGTCG----------CCGCCAGGAAGTCAGGG-GAGGCCATTTCCGGTGCGCG--TGCAGCTCGTGCAGCCCCTGCC s canFam1.chr18 30363668 308 + 66173745 ACTGGTGGCTTTCTCCCTCGGCTTCCGCGGGTGTGGACTGGCTGCTACCTTCGGCGGCCGGAGCTGCGCGGCTCCTGATTGGCCTAGAGAGGCGCGCACGCCCCGCGCGATCCTT---CGTCGAACGTGGCAGTGGGGCGGAGTTCCCGGCTTAGGGGCGGGGCTGCGCCTGCGCCTCTGACACCCCTCGTGTTGCATTCTGATTGGACGGCTTGCCCGTAACTGACACCGTTCCCCCCGCACACATCCGCTCGGCGAGCCGGAAGCTGGGGCAACGCAACTTCCGTTGCGCG--TGAGGTTCCGGCGGTGCC---- s galGal2.chr3_random 652627 263 + 1636275 ATTGGCGGTCGGCCTCTCTCTCTTCCCGAGGGCCACCATTGGTCTTCTTCCCCGCTGC---------GTCGGCCACCATTGGCC----GGCGTTTCTG--TCTCGCGCGGCCGTTTGCCGTCGAACGTGGCAGTTGGGCGG---TCCCGGC----GGGGGGCACTGCGCCTGCGCGCAGGGAGACGCGCGTGGTGGATTCTGACTGGGCCGTGTCC-----ACCG--------CCCTCTGA--CT----------CGAACCGGAAGCGAA---AGCGCCTCTTCCTGTGCGCGCCTCTCCTGCCTAGGGGACC---- a score=-6295.0 s hg17.chr17_random 1918137 28 + 2618010 ---GTGGAAGGT------------GGGGTTGGCCGCCTA---------GGGT----- s panTro1.chr19 81172764 28 + 82489036 ---GTGGAAGGT------------GGGGTTGGCAGCCTA---------GGGT----- s rn3.chr10 109976853 28 + 110733352 -------CAGGTC--------CTGGGCGATGTTCCCCCA---------GGGT----- s canFam1.chr18 30363976 49 + 66173745 ---CTGCGAGGCCGCGTACAggcgggcgggggcaggccgatgccgagcgggt----- s galGal2.chr3_random 652890 34 + 1636275 GTGCGGGCACGT------------GACGTAGCCGGGC-----------GTGTAGTTC a score=14620.0 s hg17.chr17_random 1918165 324 + 2618010 CGGCGGTGGGCTCGGTGTGGGATAGCCGGCCCGGTCCGACGCGCTCCGCGAG-GTCACGCGAGA-CACTCACCGAGGCATGGCGGCAGGGCCTGGGCA-TGGGAATCGTGCGCACAGT----GCGAGGAAGCCTCGGAGGGGATACGA-GCACAGGGCGGGTGGTTAGGAGAATGGGGCTGGAGAGACGGGCGGGAG---------------GGGCGGGACCTG--GGCCCCGGGGACCTGCCGGCTCCCA-GGCCCCAGGAAGA-----CGCTGCTCATGCGTGGAGCGGCCGCA-GGAAAGG-TACTCCCCGCTAAGGCCTTCA-GGGAGCGGCCCTTTGCCCTGTGCGATCTCTT s panTro1.chr19 81172792 326 + 82489036 CGGCGGTGGGCTCGGTGTGGGATAGCCGGCCCGGTCCGACGCGCTCCGCGAG-GTCACGCGAGA-CACTCACCGAGGCATGGCGGCAGGGCCTGGGCA-TGGGAATCGTGCGCACAGT----GCGAGGAAGCCTCGGAGGGGATACGA-GCACAGGGCGGGTGGTTAGGAGAACAGGGCTGGAGAGACGGGCGGGAG---------------GGGCGGGACTTG--GGCCCCGGGGACCTGCCGGCTCCCA-GGCCCCAGGAAGA-----CGCTGCTCATGCGTGGAGCGGCCGCAGGGAAAGG-TACTCCCCGCTAAGGCCTTCAGGGGAGCGGCCCTTTGCCCTGTGCGATCTCTT s canFam1.chr18 30364025 213 + 66173745 cagcagaggg-gcggggtggggggggcggCCCCCTGCGGCTCG------------AAAGCGGGAGTGCTCTC---------------GGGCTCGGGCA----GCGCCGAGCGCGCAGTGTCGGCGCGGAGCCC-------GGCTGAGC-GTCCCGACCGCGC---------------GCAGTAGAGACGCGATCGAG---------------AGANGGGTCCGGCCGGCCCC-----CCTGCGGGCTCGGA-AGC------------------------------------------GGGGACG-TGCTCCC-----GGGGCCTCGGGGCAGCGGCC--------------------- s galGal2.chr3_random 652924 334 + 1636275 CGACCGCTGGGTCGGAGCGG------CGGCCACGGGC--CGCGTTCCACGAGTGAGGCCCCGGACCGTAAGCCGTGCCGTGGCAGGAGCGCGAGGGGGCTGCTCGGTGTCCCCGCGGCCTCTCCCCG----CCTCCTGCAGACCACGAGGCCTGGAGCGAGCGGCTCCGCGT-----GCCGTCCCGGTGGGCCGGAGCCCCTCCACGGCTCAGCACGAAGCCCGGCTGCCAC---GCCCTGCCCGCAGCCACTGCCCCGTGGAGAACGTGCGCGGCCTTTGGCTGCGGTGTTGGCACGCAGGGGCTGCCCGTTGATAAGGGCC----GGCCGCACCCCGCCAGCATAGGAGACCTCTT a score=1052.0 s hg17.chr17_random 1918489 30 + 2618010 CCTTCCTTTCCCACGGGTTGCCAAATCCTG s panTro1.chr19 81173118 30 + 82489036 CCTTCCTTTCCCACGAGTTGCCAAATCCTG s canFam1.chr18 30364238 4 + 66173745 -------------CGAG------------- a score=7560.0 s hg17.chr17_random 1918519 117 + 2618010 TGACGCTGCCCCTTCTCTGGTGCTTCTCAGATGC--------TCTGGT----CGGCTCAGGAGACCTCGCAGCTGTTACACAGCTGTGGAAATACCC-----TGGGCGCTGCTTCACTCCGAAGGCAGCAGCTG s panTro1.chr19 81173148 117 + 82489036 TGACGCTGCCCCTACTCTGGTGCTTCTCAGATGC--------TCTGGT----CGGCTCAGGAGACCTCGCAGCTGTTACACAGCTGTGGAAATACCC-----TGGGCGCTGCTTCACTCCGAAGGCAGCAGCTG s canFam1.chr18 30364242 46 + 66173745 ---CGCCGCC--------AGTG--------------------TCCGGC----CGG--CGGGAGGCCCCGC----------------------------------------GCTT----------GCAGCCGCT- s galGal2.chr1 67300685 134 + 188239860 TGATGCTGCAACTTCTTTGGTGCTTTTCTGCTGCTATTTGGGTTTGGTACTGCAGCACATAAGAAATCCCAGTTTGCTCACAGTTGCAGATATCTCTACACAAGCATACTGCCAGATTACAAAAGCTAAAACTG a score=6451.0 s hg17.chr17_random 1918636 43 + 2618010 GGTTTGCCTCCCGACTCGACCCGCCACCGAggctcntgagcac s panTro1.chr19 81173265 43 + 82489036 GGTTTGCCTCCCGACTCGACCCgccaccgaggctcctgagcac s canFam1.chr18 30364288 36 + 66173745 -------CCCCCGACCCCGCCGGCCGCGAGAGCTACGGAGCAC a score=96509.0 s hg17.chr17_random 1918679 1123 + 2618010 ttgaaatatggccagtccacctgagacgggctgtgagtgcgcaatgcacatcaaacttctaagactgagtgtgcggggccgagtgcggtggctcacgcctgtaatcccagcactttggaaggccgaggcgggcggatcacgaggtcaggagttcgagaccagcctgatcaacatggtgaaa--ccccctcacctcccgtctctactaaaaatacaaaaattaacagggcctggtggcgcgcgcctgtaatcccagctactcgggaggctgaggcaagagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcgcgccattgcactccagcctgggcaacagagcgagactccatnctcaaaaaaaaaaaaaaaaaagtgtgcgtgtaggggctggaggacagaaggtacagtatttcgttaataactttacattgactactacatgttgaaatattctgtatgcatatgttggattacataataatattgaggccagngtgctgtgtggctcactcctgtaatcccaccacttttggagaccgangcangaggatcccttcagcccaggagttcgagaccagcctgggcaacatagtgagactcccgtctctacaaaaaataaattaaaaaaattagccaggcacggtggtgtgcacctgtggtcccagctacttgggaggtggaggtgggagaatcatttgagcccangaggcngangctgcngtgagccatgatcccaccactgcactccagcntgggcgacagatcgacaccctatctcaaaaaatagtaaaaaaNTGTCCttttttnaaaatttttattttttatttttttgagacagaatctcactttgtcat-ncaagctggagtgcagtgggcgatctcggctcactccacctcccggattcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccaccatgcccagctaatttttgtatttttagtagagacagggttttanccatgttggccaggctggtctcgaactcctgacgtcaggtgatccacccgccttggcctcccaaagcgttgggattataggcgtgagccaccngcaccnnaggncc s panTro1.chr19 81173308 1104 + 82489036 ttgaaatatggccagtccacctgagacgggctgtgagtgcgcaatgcacatcaaacttctaagactgagtgtgcggagccgagtgcggtggctcacgcctgtaatcccagcactttggaaggccgaggcgggcggatcacgaggtcaggagttcgagaccagcctgatcaacatggtgaaaccccccctcacctcccgtctctactaaaaatacaaaaattaaccgggcctggtggcgcgcgcctgtaatcccagctactcgggaggctgaggcaagagaatcgcttgaacccaggaggcagaggttgcagtgagccgagatcgcgccattgcactccagcctgggcaacagagcgagactccat-ctc--aaaaaaaaaaaaaaaagtgtgcgtgtaggggctgggggacagaaggtacagtatttcgttaataactttacattgactactacatgttgaaatattctgtatgcatatgttggattacataataatattgaggccag-gtgctgtgtggctcactcctgtaatcccaccacttttggagaccgaggcaggaggatcccttcagcccaggagttcgagaccagcctgggcaacatagtgagactcccgtctctacaaaaaataaattaaaaaaattagccaggcgcggtggtgtgcacctgtggtcccagctacttgggaggcggaggtgggagaatcacttgagcccaggaggctgaggctgcggtgagccatgatcccaccactgcactccagcctgggcgacagatcgacaccctatctcaaaaaataataaaaaa-TGTCCtttttttaaaatttttattttttatttttttgagacagaatctcactttg--atgacaa----------agtgggcgatctcggctcactccacctcccggattcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcatgcaccaccgtgcccagctaatttttgtatttttagtagagacagggtttta-ccatgttggccaggctggtctcgaactcctgacgtcaggtgatccacccgccttggcctcccaaagtgttgggattataggcgtgagcca-ctgcacca---ggcc a score=3064.0 s hg17.chr17_random 1919802 20 + 2618010 tcctcttctatcttttaacg s panTro1.chr19 81174412 20 + 82489036 tcctcttttatcttttaacg s canFam1.chr18 30364434 20 + 66173745 TTTTTTTTTCTTTTTAAACT a score=6047.0 s hg17.chr17_random 1919822 58 + 2618010 tggcttttagaaac---ttttaaaattacatag-------------atggtctgcattttgttagtgttggaca---- s panTro1.chr19 81174432 57 + 82489036 tggctttaagaaac----tttaaaattacatag-------------atggtctgcattttgttagtgttggaca---- s rn3.chr10 109977143 61 + 110733352 TGGCTTCTGTAAGTCAGCCTTTATATTACGTAG-------------GAGATTCACATTTTATCTCGGTTGGACC---- s canFam1.chr18 30364454 71 + 66173745 AGGTTCTAGGAAAC-----TAAAAATGACAAAGTAACGTGCAAAGCGTGGCTCACG--TTGTTTTCGTTGGCCCCGCG a score=13299.0 s hg17.chr17_random 1919880 137 + 2618010 CTGG--CAGCCCTCCGTCTCC-----CTCACTGCCTGGAATCTG--CTGCTCTCCTTTTCCCC----AGGTGCCTGCCCTCTCCA-------TT-------CCTCCTCACT--------TTCCTCCGCTG-GGAATCGGCACCGCCACTGATTTTAAAGTTGA-------------AACTTGGCAG s panTro1.chr19 81174489 137 + 82489036 CTGG--CAGCCCTCCGTCTCC-----CTCACTGCCTGGAATCTG--CCGCTCTCCTTTTCCCC----AGGTGCCTGCCCTCTCCA-------TT-------CCTCCTCACT--------TTCCTCTGCTG-GGAATCGGCACCGCCACTGATTTTAAAGTTGA-------------AACTTGGCAG s rn3.chr10 109977345 149 + 110733352 CTGA--CAAAGGTCCATCCTTTACTGCTCAATGACTGATATCCGACCTGCTCTCCACCCCCACCCGAGAGCGCTTGGCTCACTCA-------TTCTAGCAGCCTCCTCTTT--------TTTCACTTC-------CCACCACAAACACTATCCTGATAGTCAA-------------GGGTCATTAG s canFam1.chr18 30364525 172 + 66173745 CTAGACCAGTCAGCTGGCCCC-----CCCCGTCCCAGCAGCCCG--CCCCGCCCCCGCTCTCTGAACGGGCCGTTTTCTTCTCCAGGAAACCTT-------CCTCTTCGTTTAATTGGCTTCCTCTCTTACGAAAGGGCCACCACCACTGGTTTGAGGACTAATCATCAATTTAATAACTTGGCAG a score=-360.0 s hg17.chr17_random 1920017 3 + 2618010 GCA s canFam1.chr18 30364697 1 + 66173745 G-- a score=200.0 s hg17.chr17_random 1920017 2 + 2618010 GC s panTro1.chr19 81174626 2 + 82489036 GC a score=0.0 s hg17.chr17_random 1920017 2 + 2618010 GC a score=546.0 s hg17.chr17_random 1920019 1 + 2618010 A s panTro1.chr19 81174628 1 + 82489036 A s mm5.chr11 120245237 1 + 121648857 A s rn3.chr10 109977494 1 + 110733352 A a score=31534.0 s hg17.chr17_random 1920020 120 + 2618010 AAAGGGAGGTACTCCCATGTTAAATGTATACACATTGACTGCNAATAGTATCCTGACTTTTGAAATGG-TAAAACGTAGAGTAAGTTGC------TTTTGTA-CTTTGAGAGTTTCTGTTNTGTTGAT s panTro1.chr19 81174629 118 + 82489036 AAAGGGAGGTACTCCCATGTTAAATGTGTACACATTGACTGC-AATAGTATCCTGACTTTTGAAATGG-TAAAACGTAGAGCAAGTTGC------TTTTGTA-CTTTGAGAGTTTCTGTT-TGTTGAT s mm5.chr11 120245238 122 + 121648857 AAAGGCAAACACCCAAATATTAA--GTATATAGATTGACT---AGTACTACACTGCTCTCAGAAATGGATAAAAAACAAGAAATATGGCATATGGTTTTGTA-TTTTGATAGTTTTTTTTTTTTTAAT s rn3.chr10 109977495 115 + 110733352 AAAGGAAAACACTCAAATATTAA--GTGTATACAATGACT---AATAATATACTGCTCTCAGAAATGG-TAAAA-GCAGAA-ATATGGTATATGGTTTTGTA-TTTTGATAGTTTTTTGT-TGTT--- s canFam1.chr18 30364698 120 + 66173745 AAGGAGAGAAACGCCCACGCTCA--ATGTACACGTTGGCTGT-CCTAACGTCCTCATTTCACAAACGG-TCAGACACAGGAAAAAAGGT----GCCTTTATACCCTCCAGAGTTCGCATTTTGTTGCT a score=-1455.0 s hg17.chr17_random 1920140 2 + 2618010 -CA s panTro1.chr19 81174747 2 + 82489036 -CA s mm5.chr11 120245360 2 + 121648857 -TG s rn3.chr10 109977752 2 + 110733352 -TA s canFam1.chr18 30364819 2 + 66173745 CC- a score=64469.0 s hg17.chr17_random 1920142 394 + 2618010 GTTGTTCCTGAGAACATGC-----TTCTCCTTCCGACAGGGAACTCcctccactagaatatgagctccttgtnggtcaagactgggtcccctgttcccttcccc---ccagtg-ccAGCGGANGC-AAAGGTCAGTCAGC-GGCATAAGTTGTA-CCTGCTGGGAGAACTGTCTGCTTCCTCCGGGT---GACTTTTCTGG----CCAAG---AAGGAATATGAGTATGTGCCT----------------CCC---------TGAGCACTGGCCTGG-AG----CCCACTCAGGAAACACCATCTCTTCATAAATGGTTT----------TGATTGCAGGNCATTGTTC----CTTCTGCTCTCTG--GATGATGGAAATTGCTTCAGGT----CACTGCACTATCTTCCAACG-TTTTTGTGGTTGCCATGAGC--TGTTGTACAGACCACAGTTTG-GGGCCTGAGAC s panTro1.chr19 81174749 397 + 82489036 GTTGTTCCTGAGAACATGC-----TTCTCCTTCCGACAGGGAACTCCCTCCACTAGAATATGAGCTCCTTGT-GGTCAAGACTGGGTCCCCTGTTCCCTTCCCC---CCAGTGCCCAGCGGA-GCGAAAGGTCAGTCAGCGGGCATAAGTTGTACCCTGCTGGGAGAACTGTCTGCTTCCTCCGGGT---GACTTTTCTGG----CCAAG---AAGGAATATGAGTATGTGCCT----------------CCC---------TGAGCACTGGCCTGGAAG----CCCACTCAGGAAACACCATCTCTTCATAAATGGTTT----------TGATTGCAGG-CATTGTCC----CTTCTGCTCTCTG--GATGATGGAAATTGCTTCAGGT----CACTGCACTATCTTCCAACG-TTTTTGTGGTTGCCATGAGC--TGTTGTACAGACCACAGTTTGTGGGCCTGAGAC s mm5.chr11 120245519 400 + 121648857 GTTGTCAATAAGGACATGCATGTATTACCTTTCCTACTAGAAACTCCTCTTA-TCTAGTGTGAGTTTCTTCC-CTTGAAGACCAAGTCCTTTGTGCCCCAACCC-ATTCAGTG-TAGGCAGA----GAGGG--AGTCA---GATCCTGGTCGGAGCTCACTGGGAAACCTTCGAGTATATACGGGAT---GACTTTGCAGG----CCTAG---GAGAGCTATGAATGAAT--------------------------------------TTGCCCTGGAAGAGTACCTAATCTAGCAGCAGCTTGGCTAGGTGCTTGGTTTTTTCTCTGCCTATCTTTAGT-GCCTGTACACA-TTCCTGACTTGGG--TACAATAGAAATAGCTTCATATATGATGCTG--CTATCTCCCAGTGATTTTTTTAGCTGCCTTGAGC--TGTTCTAGAAACCATTATTTG-GAACTAGAGAC s rn3.chr10 109977754 386 + 110733352 GCTTCTTGTAAGGACATGT----GTCACAGTTCCTACATGGATCTTCCCTTACC----TATGAGTTT------GTTGAAGACCAAGTCCTCTGGGCCCCAACCCCATTTAATG-TAGGAAGA------GTGACAGTCA---GATACTGGTTGTG-CTCACTGGAAAACTTTCACGTGTATACAGTAT---GACTTTACAGG----TTAAA---GAGGGCTATGAATGAAT--------------------------------------CTGTCCTGGAAGAGTACCTAGTTCGGCAGCAGCTTGGCTAGGTGCTTGGTCTTTTCTCTGCCTATCTGAAGT-GCCAGTACACATTTCCTGCACTTAG-AAATGATGGAAATTGCTTCATAT---CTGCTG--CTGCCTCCTATTG-TTCTTGTAGTTACCTTGAGT--TGTTTTAGAAACCATTATTTG-GAGCCAGAAAT s canFam1.chr18 30364821 414 + 66173745 TTGGCTCGTGAGGCCGTGC---TCTCTCACCTCCTGTTGGGG-CTCCCTCCACTC---AGCGAGTTCCTGAA-GGTCAAGACCAGGTTCTCCGTGTCTTGCCCC----CCGTG-CCACTAGA-GC-AAGGGTCAG------CAGAGGGGGTGCA-CCTGCCCGGA----TCCCTGTGTCGTCTGAGCTGGGGCTTTGCTGGGGCTTCGGGCGCAAGGGCTATGCACACGTGTCTGGCAGCTGCCGCTCAGCCCAGCTTCAGTGGGGCCCTGGCCCTGCAG----CTCAAGGAATGAATGACAGCTCTTCGTAAC----------------TAATGGCAAG-CAAAGTCC----CCTTTGCTTTTTCCAACGGGTGGCAGTTGCTTCATGG---CTGCTGCCGTGTCTTCCGACG-TTTTTGTGATTACCATAACCCTTATTGTGTAGACCACAATTTT-GGGTCTGATAT a score=1092.0 s hg17.chr17_random 1920536 2 + 2618010 Aa s panTro1.chr19 81175146 2 + 82489036 Aa s rn3.chr10 109978140 2 + 110733352 AA s canFam1.chr18 30365235 2 + 66173745 AA a score=14368.0 s hg17.chr17_random 1920538 158 + 2618010 gctgggcat-ggtgttgcatgcctataatctcagctactttggagggtgaggcaggagaatagcttgggcccaggaggtctaggctgcagtgagccatgatcataccactgcacttctgtctgcgtgacagagaccctgtatcttacataaaaCCCCAG s panTro1.chr19 81175148 159 + 82489036 gctgggcatgggtgttgcatgcctataatctcagctactttggagggtgaggcaggagaatagcttgggcccaggaggtcgaggctgcagtgagccgtgatcataccactgcacttctgtctgcgtgacagagaccctgtatcTTACATAAAACCCCAG a score=54184.0 s hg17.chr17_random 1920696 427 + 2618010 CCCATATTTGTACCACATCTAGATAC--------------GAGGTCAGAGTTCAGATGCCTAAATATTGTAGCTTGTGTTTTGTCCACNTGTTGGGGGAAGAGTGAAGAGATTTGACATACCATAATGTTGATT----AGCTTGTGATGGTTTGGCGGCAGCTTAGGCC-AGAGCATAAAGTAAAAAGGAAAAGTGTTCACAGACAATGAANAAC--TGGGACCAAGTGGTGAATACTCAAGGCACACAGACCAGGCAAGGATCC--CAGTGGCCGTGGATGAGTCTCAGGCTGGCTCTGGGCCAGTGGAACACACCTCAGTGTGGGTGAAGGCCTAGCCAGGGTAGCAGAGGGCAGGGCTACAGAACAGCAGCCCAGGTGGCTGTGGCCGACCTGACATTCTCCTGTGAAAATCAGGTGCCCAACCA--GCACTAATCTAGATAGATGGCA s panTro1.chr19 81175307 425 + 82489036 CCCATATTTGTACCACATCTAGATAC--------------GAGGTCAGAGTTCAGATGCCTAAATATTGTAGCTTGTGTTTTGTCCAC-TGTTGGGGGAAGAGTGAAGAGATTTGACATACCATAATGTTGATT----AGCTTGTGATGGTTTGGCGGCAGCTTAGGCC-AGAGCATAAAGTAAAAAGGAAAAGTGTTCACAGACAATGAA-AAC--TGGGACCAAGTGGAGAATACTCAAGGCACACAGACCAGGCAAGGATCC--CAGTGGCCGTGGATGAGTCTCAGGCTGGCTCTGGGCCAGTGGAACACACCTCAGTGTGGGTGAAGGCCTAGCCAGGGTAGCAGAGGGCAGGGCTACAGAACAGCAGCCCAGGTGGCTGTGGCCGACCTGACATTCTCCTATGAAAATCAGGTGCCCAACCA--GCACTAACCTAGATAGATGGCA s canFam1.chr18 30365237 402 + 66173745 GCAATATTTGTACCTTGTCTGGATTTCAGAGGCACTCATAAAGACCAGTGTTTAGATGGCTGCATGTTGCGGCTTTGTTTTTTCCTGC-TGTTGGGGACAGAGCAAAGAGATTTAAGATACCATGATGTTGGTTGATGAGTATGTGATGGTTTGGT-GCAGCTTCACCCTGGAGCATACTGT--------------CTGACAAAAAATGAG-AACTTTGGGATTGAGGGGAGA-------------ACAAACCAGACAAGGGTCTAGCTGCGGCCGTGACCGAGCCTTCTGGTAG--CTGAGTCTGTG-------CTTCCATGTAGCCAAGGGC--AGCTGACACACCTTGATGCA-GGTGATGACAGTGCAGCCCAGGTGGC-AAGGCCAAGTCA----TGTCCTGTGAAGAGCAAA-GACTAAGCAGGGCTCTGGCCTGGACAG--GGCA a score=12188.0 s hg17.chr17_random 1921123 140 + 2618010 GCAttttttttctttaaagacaggatcttgctat-gttgctcaggctggtcttgaactcctgacctcaaaggatcctcccctcttcagcttcccaaagcactggggttacagatgtgagccagca-cgcccagccGAATCAN s panTro1.chr19 81175732 142 + 82489036 GCAttttttttctttaaagacaggatcttgctatggttgctcaggctggtcttgaactcctgacctcaaaggatcctcccctcttcagcttcccaaagcactggggttacaggtgtgagccagcatcgcccagccGAATCAT a score=4868.0 s hg17.chr17_random 1921263 43 + 2618010 CAGTATCTTAGACAGATGCCATGGCTGCCCATAGGGTCCTCTC s panTro1.chr19 81175874 42 + 82489036 -AGTATCTTAGACAGATGCCATGGCTGCCCATAGGGTCCTCTC s canFam1.chr18 30365639 36 + 66173745 CAGTGTTT------GGTATCTTGGCTGCAC-TGTGTGCTTCTC a score=40642.0 s hg17.chr17_random 1921306 416 + 2618010 AAGGTGCCTCTGCC-CTTGGACTGGCTTCCTACACCAACCTGA-CAGGTGCAGCAAAGGTGGACTTTCTGGTAAGGCTGGAGGAGGAAGCCTGGTCT-GCGATGGCCTGAGAC------GCCC----TCTATGGGGGTTGTTGAGTGGATGGA---------------AATGTGCAGGGCATGGGTCCTGCCCCCNAGAA----TGCAGGCTGGTTCCGCTGGGNCACCTGCA-------GAGG-----GCTGATG-------TCCTTTTCCTGAGGCCTGCTCCTGTGCCTTCTAACCCTAG--------GGTGAGAAGATGGGCTG----TGTT----CACCTCATGCCCAGGCCCTTCGA--GGAGTGTGCCCTTGGGGGTCAGAGCCCTCCTGTGGCTGGTAT-TTCTTTGGATCATCANCAGGTGCTCCNAGACATCCTTTAG---G-GAGTCTCAGGCTTGGTGAAGGGATCCATTAAATGTTG s panTro1.chr19 81175916 413 + 82489036 AAGGTGCCTCTGCC-CTTGGACTGGCTTCCTACACCAACCTGA-CAGGTGCAGCAAAGGTGGACTTTCTGGTAAGGCTGGAGGAGGAAGCCTGGTCT-GCGATGGCCTGAGAC------GCCC----TCTATGGGGGTTGTTGAGTGGATGGA---------------AATGTGCAGGGCATGGGTCCTGCCCCCAAGAA----TGCAGGCTGGTTCCGCTGGG-CACCTGCA-------GAGG-----GCTGATG-------TCCTTTTCCTGAGGCCTGCTCCTGTGCCTTCTAACCCTAG--------GGTGAGAAGATGGGCTG----TGTT----CACCTCATGCCCAGGCCCTTCGA--GGAGTGTGCCCTTGGGGGTCAGAGCCCCACTGTGGCTGGTAT-TTCTTTGGATCATCA-CAGGTGCTCC-AGACGTCCTTTAG---G-GAGTCTCAGGCTTGGTGAAGGGATCCATTAAATGTTG s mm5.chr11 120247010 407 + 121648857 AAAAGTCTGCTATC-TCTGCACTGGCTTC---TACCAGGCAAT-CAACCACTGGAAAG--------------AAGTCAGAGAGA-------------------GGCCTAAAATTCTTGGGCCC----TCT---GGGTTTGTTGAGTGGCCAGATAATATATGGGTAGTAATATAAGGGTAGTATGTCCCA-ACCTGAGAA----TGCAGGTCAGATCACCTGAA-CATCTACAAGCCCTTGAGGGCCCAGCTGATGACTTAGTTCTGTTTCCCAAGGCCT-CTCTTACTTCTTCTAAGAGCAGCTGCCATTGCTGAAAAGAGGTGTTA----GTTTGGACAACCTAGTATCAAGGTCCT-----------------------GTAAGACCCACACTGAGTATTACACATTTTCTGGGCCATTG-GAAATGCATTGAAATATCCTTCAGGCAG-GAGTCTTA--CTCAGAGAAGATGCTCATCAACTATAG s canFam1.chr18 30365675 397 + 66173745 AGGGTGCCTGCGCCTCTTGAATTGGCTTT--GTGCCAACCTGTGCAAGAGCAGCAATGTTGGGGTCCTCC--AAGTTGGAAGGA---GGCCTGATTTGGGGAAGGCCCGAGAT------CCCCAGTTTCTGTGGGGTTGGTCTCG-----GAA---------------CACAGGCAGGTT-----------CACTGAACACCTCTGCAGGCC--TTGGCTTGGA------GGG-------GAGG-----CCTGGTA---TGGATCTCCTTCCAAGGGTCCCCTCACGTATCTTCCAGAAGCAGC-------TCCAGAGAGAGGCCTTGAGGCTGTT----CACCCTGTACCCGGGGCCCTGCACTGGAATGTGCCCTT----GTGACAG------TGGCTCTGGCAC-CTCTCAGGACCAGCA-CAGCAGCTCCAGGGCATCCTCCAG---GTGTCTCTCCTTCTCTGAGAAGCTGCCCATTAAATCTCA a score=463.0 s hg17.chr17_random 1921722 5 + 2618010 CTTAG s panTro1.chr19 81176329 5 + 82489036 CTTAG s mm5.chr11 120247417 5 + 121648857 GTTGA a score=33392.0 s hg17.chr17_random 1921727 383 + 2618010 TTGGtttttgtttgttttttgttttttcgagacagagtctccctctgttgcccaggctggagtgtggtggcgtgatcttggctcactgcaacctccacctcccaggttcaagcgattctcctgcaacctctgcctcccaggttcaagcgattctcctgccttggcctcctgagtagctgggattataagcgtgtaccaccaacccntggatgatttttgtantttttagtagaggcagggtttcanccatgtntgtcaggctggtctcnaactcctgacctcgtgatcctcctgcctcggcctcccaaagtgctgggattacaggcgtgagccatcatgcccagccAACTGGTTTGTGATTAAATGTTTTGATTGATGCAGTT s panTro1.chr19 81176334 380 + 82489036 TTGGtttttgtttgttttttgttttttcgagacagagtctctctctgttgcccaggctggagtgcggtggcgtgatcttggctcactgcaacctccacctcccaggttcaagcgattctcctgcaacctccgcctcccaggttcaagcgattctcctgccttggtctcctgagtagctggaattataagcgtgtaccaccaaccc-tggctgatttttgta-tttttagtagagacagggtttca-ccatgtttgtcaggctggtcttgaactcctgacctcatgatcctcctgcctcggcctcccaaagtgctgggattacaggcgtgagccatcatgcccagccAACTGGTTTGTGATTAAATGTTTTGATTGATGCAGTT a score=2662.0 s hg17.chr17_random 1922110 31 + 2618010 TTTGAAATGTACTGNTGTGTACAATATTACt s panTro1.chr19 81176714 30 + 82489036 TTTGAAATGTACTG-TGTGTACAATATTACT s canFam1.chr18 30366072 15 + 66173745 TTTGAA--GTACTG--------------ACT a score=20873.0 s hg17.chr17_random 1922141 226 + 2618010 cttttgagacagggtctcactctgtcacctaggctggagcacagtggtgcagtcatggcccactgcagcctctgccttgtagccntcaagtgatcctcctgcttcagcctcctgagtagctgggactacagttgtgcaccaccatgcccacctaatttttatttttttaaagatggggtctcctgtgttgcccaggctggttttgaactgctgagctcaagtgatc s panTro1.chr19 81176744 225 + 82489036 Gttttgagacagggtctcactctgtcacctaggctggagcacagtggtgcagtcatggcccactgcagcctctgccttgtagcc-tcaagtgatcctcctgcttcagcctcctgagtagctgggactacagttgtgcaccaccatgcccacctaatttttatttttttaaagatggggtctcctgtgttgcccaggctggttttgaactgctgagctcaagtgatc a score=1441.0 s hg17.chr17_random 1922367 16 + 2618010 TGCTTCTGGCCAGCTA s panTro1.chr19 81176969 16 + 82489036 TGCTTCTGGCCAGCTA s canFam1.chr18 30366087 16 + 66173745 GACATTTTGATAAATA a score=16691.0 s hg17.chr17_random 1922383 115 + 2618010 CTACTCTTAAAAGT-AGAGTTCTCAGAGCAAAACAGCTCCCTTTCA-------ACNCTTCAGTCCGGTCGAAGGTGTGGTGGGGGTAACAACAGCA----GGCTCATGGAT------ACCTGGGCAGTGCTCC s panTro1.chr19 81176985 111 + 82489036 CCACTCTTAAAAGT-AGAGTTCTCAGAGCAAAACAGCTCCCTTTCA-------AC-CTTCAGTCCGGTCGAAGGTGTGGTGGGGGT---AACAGCA----GGCTCATGGAT------ACCTGGGCAGTGCTCC s mm5.chr11 120247439 118 + 121648857 CTATTCCTA------AGAGTTCTCAGAACCAAGCAACTCCCTTTTGGAGGGACAC------ACCTGGCAGGGTGTCCAGTAGGGTG---GACAGCAGATTGACTCCAAGACTGATTGACCTGGAGGGTGAACT s canFam1.chr18 30366103 106 + 66173745 CTATTCTCAAAAATAAGAGTTCTCAGAGTAA---AGCTCCCTCCCA-------GT-CTGTGACAGGGT---AGGTTTCGAGGGAGT--CACCAGCA----GGCTCATGGC-------AGCCAGGAAGTGCTCG a score=-8944.0 s hg17.chr17_random 1922498 118 + 2618010 GAGGTCCCTCCTGTGTTCCCACTGAGCAGCAGCCTGCT--GTGCCCGGA-GTGGAG-----GTGAGA----------AATCCAGCA---GCAGCGCGGTGGTGAGTGTGGGCCC---TGCGGAGTGTGGC-----------AGGCGCTCATTA s mm5.chr11 120247557 68 + 121648857 GAAAGAGCTGATGACAGCCAAGCGGGAAGCAGAATGGT--GTCCACGGCTATGGGG-----ATGGTA---------------------------GCTTTGGT--------------------------------------------------- s canFam1.chr18 30366209 146 + 66173745 -------CTGGCCACGTGTAGCCAAGGGGTCGAGGGGTCGGCTCCTGACTGTAGGGTCCCAGTGGGGCAGGACCGCACAGCCAGCACAGCCAGCCCAGTGTGCACTCTGGGACACAGTGAGGAGTGCGGCCTGGGGGCAGGAGGGGGTCCTGA a score=2104.0 s hg17.chr17_random 1922616 7 + 2618010 TGGTGCA s mm5.chr11 120247625 7 + 121648857 TGGTACA s rn3.chr10 109980624 7 + 110733352 TGGTACA s canFam1.chr18 30366358 7 + 66173745 TGGAGTG a score=124356.0 s hg17.chr17_random 1922623 443 + 2618010 GGGCAGTGTTGGGCACAGAGAAGGTTCTCA-GAAACCACAGTAACCCATGG----TTAGTTNGGTCACATCCCAGACCCTGACCTAGCACTGGCTNGGCNACTGT-----GACTTGTCACTCTCCTGAATGGAAGAAGTGTCCACCTGGGGGTGGCTGAGGAGGT-GGATGCTAGGGGACTGCTGGGAGCCACGGACCTGTGGAGGTTG--GGAGAGGAGACTGCAGGCGCAGGCTGCTGGAGGCGAGG----AGGCCTCTCTGGAGCGCCAGGCCATACAAACAGGTCCCAG---GTGGGGCCACGAGG---ATCAGGTTAGACTTGGGACCCGAGAGACACGTCATGCCCACTGTGCAGGTGCCACCTCATGTTATCCTGCACCAGGGNGAGGGGCCAGCCCAAAGTCCTGGCTGCTGGCAGCATGCCCGTACAGCTTGGCACCT-GGGTCTGAGTTCACATGTC s panTro1.chr19_random 1245580 438 - 57627672 GGGCAGTGTTGGGCACAGAGAAGGTTCTCA-GAAACCACAGTAACCCATGG----TTAGTT-GGTCACATCCCAGACCCTGACCTAGCACTGGCTGG--CACTGT-----GACT-GTCACCCTCCTGAATGGAAGAAGTGTCCACCTGGGGGTGGCTGAGGAGGT-GGATGCTAGGGGACTGCTGGGAGCCACGGACCTGTGGAGGTTG--GGAGAGGAGACTGCAGGCGCAGGCTGCTGGAGGCGAGG----AGGCCTCTCTGGAGCGCCAGGCCGTACAAACAGGTCCCAG---GTGGGGCCACGAGG---ATCAGGTTAGACTTGGGACCCGAGAGACACGTCATGCCCACTGTGCAGGTGCCACCTCATGTTATCCTGCACCAGGG-GAGGGGCCAGCCCAAAGTCCTGGCTGCTGGCAGCATGCCCGTACAGCTTGGCACCT-GGGTCTGAGTTCACATGTC s mm5.chr11 120247632 413 + 121648857 GGATTGTGCTGGG--CAGAGAAGGGTCTTG-TAAATCACAATAGCAGATGT----TTA-------CACAGCATGGAAGCTGACTGCTCATCAACTGG--TACTACCTACAGCCC-ATCACTTTCCTCAGGAGAGGAG--GCCTGTCTATAGGTGTCTGAAGAGCCAAGAAGCTAGGCAATTCCTGGGAGTCCTAGTC--------------AGAGAGGAG-CTGC-TGTGGAGAATGCCTGGCTCCTGA----GGGCCTTGCAACAGCTCT---CCACAGAGGCAGGTTAGGGGGCGTGAGATTGGGAGG---ATCTGGTTAGACTTGGGACCTAGGAAACACATCATGCACTTTGAG-----GCCACTCTGAGTTAACCTGCACTGG---GAGGAGCCAGAGCAAAGTCCTAGCTGTTGGCAGTAGGCTTGTACA-CTTGGAACTTAGGGTCTGAGTTCACACACT s rn3.chr10 109980631 423 + 110733352 -GATTGTTCTGGGCATGGAGAAAGGTCTTGTTAAGTCACGGTAGCTGATGGACCTATA-------AACACCATGGAAGCTGACTGCTCATCCACTGG--TACTACCTCCAACCC-ATCACTTTCCTCAGGAAAGGAG--GACTGTCTGGAGCTAGTTGAAGAGAT-AGAAGCCTGGGAATTTCTGGGAGTCCTAGGCAGAGGGAAGTTGTTGGGGAGGA---TGC-----CTGGCTCCTGAGGAAAAAGGGATGGGCCT---TGGAACACA---CCACAGAAGCAGGTTA------GTGAGATAGGGAGG---CTCTGGTTAGACTTGGGACCTAGGAAACACATCACAAACTTTATG---AGGCCACCCTGAGTTAACCTGCACTGG---GAGGAGCCAGAGCAAAGTCCTAGTTGTTGGCACTATGCTTGTACA-CTTGGAACTTAGGGTCTGAGTTCACACACT s canFam1.chr18 30366365 373 + 66173745 GAACAGTGCTGGGCATGGAGATTGTAC----TAAGTCACAGGA----ATGA----GTC----GGTCCCATCAGAGGTCCTGACCTGGCATCCACTGG--CACTTC----------CTCA--------AGGAAGAGAG--GCCCATCTGGGAGTAGATGAGGGGGC----AGCTTGGGGATTCCTGGGGGACACGGGCAGAGGACGGGA---GGAGAGAGGACCACAGGCCCTGGCTCC---------------------------------------------CAGGTTCTGT---GTGGAGCCAGGAGGAAAATCAGGTTAGACTTGGGACCCAAGAGACACGTCATGTAAGTCCTGCGGGAACCACCCGACATCGCCCTTCACCCGGG-GCGGAGCCAGCACAAAGTCCTCGCTGTTGGCAGGGAGCCTGCACAACGGGGCAGGTAGGGTCCCAGTTCACGTGTC a score=20803.0 s hg17.chr17_random 1923066 98 + 2618010 TAGCAAAGCTGGGAAAATCCAGGAGCAAGAAGGTGAAGCCCTTTGGCTCAGCCCAAGCTCAGAAGGCCCTTGCCCGAT-GAGCCGAACTGCTGA-----------CAACA s panTro1.chr19_random 1246018 98 - 57627672 TAGCAAAGCTGGGAAAATCCAGGAGCAAGAAGGTGAAGCCCTTTGGCTCAGCCCAAGCTCAGAAGGCCCTTGCCCGAT-GAGCCGAACTGCTGA-----------CAACA s mm5.chr11 120248045 108 + 121648857 TAGCTGC-CTAGGACAAACTCAGAGCTGTAAGATTAAGTATCTTGGTCCAAAGAGAGCTTCAGAAGCCCTTATTTGAT-AAACAGCATCGCTGAGAGCATCTAATAAACA s rn3.chr10 109981054 98 + 110733352 TACCTGT-CTAGAACAAACCCAAAGTTGTAAGATTATGTATCTTGGTTCAATGCAAGCTTCAGAAGCTCATATTTGATAAAGCAGCATTGCTGA-----------GAGCA a score=3589.0 s hg17.chr17_random 1923164 23 + 2618010 CCCTGGCACTGGGCTTGGGGACT s panTro1.chr19_random 1246116 23 - 57627672 CCCTGGCACTGGGCTTGGGGACT s mm5.chr11 120248153 23 + 121648857 CTTTAAGGATGAGCTAGGAGACT a score=125654.0 s hg17.chr17_random 1923187 1382 + 2618010 CCCCTGGAGCATGTAAGAAGTGAACTGGGAGCGTGGGAGAAACTGTCTGGCAGGGGCTGCTGCCTCNGGAGCTCATCCTCCCTGGCTGTGCTGGTGTCTGTCCAGTGGGATTAGCCTCCATCNCTGTGGTTTCACCACCCCACCGCCTCTCTCCCCCACAGCACAGGCAGAAGCAGCAACGCAACACGAGACCACCTCGCTTGGGGCTAGTAGCAGTTCTGGGAAAGGCTCGGTAGGGTCTTTGCTCCCTGCGGAATCAAGGGCTGGGGGCTGACCCAGGCTTTCTCTATAGCTGCTTCCAGATCTGGGTCTGGACCAGCTTCTGCAGGAAGGCACCATTCTGTTGGGGTGTCTGACAC--GGTCAGCTCTAGGCTCAGCCTCTGCGGCCCCCACAAAGGCCTAGCAAGGATGGGGCAAGGTGGCAGTGGTGCCCGCACGCACTGCCCTGGCACAGGTGTGTAGTTAGTGACCTGAAGCATGAGGGCATCTCCCTGCCCACCCCAGCTGGAGATAAGCCCCTTGCGGGGCCCACCCTGCTGATNAACCCCAGAGCAGTATGGCCTGTGTCAGAATGACCAGTAGGAGGGCCCCGGGGTAGCAGCTGCCCAGCCCAGCTGCGTGTGTGTGTGAAGTATTTTCCTCNAACACCTTATACCACAGAAGGCAGATTTTGAAACTCGCATCAGGCCAGAAAAAGAATTTCTGAATGGACACTTCTAAGGGGTGCCTGGTTACTCATCTGCCTCTTCCCCCTGCAGGGTAGAGGGGCATGGGTTTGAAGTTCCCGGGGGCTCTTGGAGACTGCAGACACGGACGAGCTGGGGTTCCTGGATGCTGCAGCAGTTGGGGCCCCTGGCTGAGCGCACCTGCCCCAGGAGGCCCTGCGTGGTTCCCNCCAGTAGCCCCTTCACACCACACCGCAGTGAGGATGCCCT--GTCTCCTGCCGATCCCATCACACCAAGCCTNTTCGCTGTTGGGCTCCTGGCACTGCCCGATCCTGGAGGGCACTTGGCTGCGGCTGTGGCTGTGAAGGGCTGGTGCTCTAGGCGCCTCCGTGGCCCCCGTTGCCTGGGCACCTACTTCCNTGCNTCAGCCACAGCTGCATCCACGTGCGCCAGGGGCCACAAGGCCGACCCTGGCTTGGGCCTGTTCCTCCCTGGGTTTCCTTGGGATCCAGTCATTGGAGGGCCCGCGCACAGCTGGGCCAACTCGACACCTCCAAGCCCGGCCAGGGAATCAAGCAGCTCTCCCTCTGGCAGCA--TGAGCTACACAAGCCAGGCCCGTCTTCCCATTCCCTTAGCAAGGAGGGGCAACCCCAGCCAAGGCCTTCTGCACTGTTCTAGACTGTTGCTGCCTAGGGCTACTGTAGCTGGGAGTCACAT s panTro1.chr19_random 1246139 1383 - 57627672 CCCCTGGAGCATGTAAGAAGTGAACTGGGAGTGTGGGGGAAACTGTCTGGCAGGGGCTGCTGCCTC-GGAGCTCATCCTCCCTGGCTGTGCTGGTGTCTGTCCAGTGGGATTAGCCTCCATC-CTGTGGTTTCACCACCCCACCGCCTCTCTCCCCCACAGCACAGGCAGAAGCAGCAATGCAACACGAGACCACCTCGCTTGGGGCTAGTAGCAGTTCTGGGAAAGCCTTGGTAGGGTCTTTGCTCCCTGCGGAATCAAGGGCTGGGGGCTGACCCAGGCTTTTTCTATAGCTGCTCCCAGATCTGGGTCTGGACCAGCTTCTGCAGGAAGGCACCATTCTGTTGGGGTGTCTGACACAGGGTCAGCTCTAGGCTCAGCCTCTGCGGCCCCCACAAAGGCCTAGCAAGGATGGGGCAAGGTGGCAGTGGTGCCCGCACGCACTGCCCTGGCACAGGTGTGTGGTTAGTGACCTGAAGCATGAGGGCATCTCCCTGCCCACCCCAGCTGGAGATAAGCCCCTTGCGGGGCCCACCCTGCTGATAAACCCCAGAGCAGTATGGCCTGTGTCAGAATGACCAGTAGGAGGGCCCCGGGGTAGCAGCTGCCCACCCCAGCTGCGTGTGTGTGTGAAGTATTTTCCTC-AACACCTTATACCACAGAAGGCAGATTTTGAAACTCGCATCAGGCCAGAAAAAGAATTTCTGAATGGACACTTCTAAGGGGTGCCTGGTTACTCATCTGCCTCTTCCCCCTGCAGGGTAGAGGGGCATGGGTTTGAAGTTCCCGGGGGCTCTTGGAGACTGCAGACACGGACGAGCTGGGGTTCCTGGATGCTGCAGCAGTTGGGGCCCCTGGCTGAGCGCACCTGCCCCAGGAGGCCCTGCATGGTTCCC-CTAGTAGCCCCTTTGCACCACACCGCAGTGAGCATGCCCTCAGTCTCCTGCCGATCCCATCACACCAAGCCTTTTCGCTGTTGGGCTCCTGGCACTGCCCGATCCTGGAGGGCACTTGGCTGCGGCTGTGGCTGTGAAGGGCTGGTGCTCTAGGTGCCTCCGTGGCCCCCGTTGCCTGGGCACCTACTTCC-TGCCTTAGCCACCCCTGCACCCACGTGCGCCAGGGGCCACAAGGCCGACCCTGGCTTGGGCCTGTTCCTCCCTGGGTTTCCTTGGGATCCAGTCATTGGAGGGCCCGCGCACAGCTGGGCCAACTCGACACCTCCAAGCCCGGCCAGGGAATCAAGCAGCTCTCCCTCTGGCAGCATCTGAGCTACACAAGCCAGGCCCGTCTTCCCATTCCCTTAGCAAGGACGGGCAACCCCAGCCAAGGCCTTCTGCACTGTTCTAGACTGTTGCTGCCTAGGGCTACTGTAGCTGGGAGTCACAT a score=169.0 s hg17.chr17_random 1924597 3 + 2618010 CCC s rn3.chr4 51238970 3 - 187371129 CTC a score=13402.0 s hg17.chr17_random 1924600 110 + 2618010 AGCAGCCACAGCANTTCAAG-------GGGGCCCTGCCCTTCCCC----------TCCCACCACCCCACCAGGGTCCCCATCTTCCCCTTTGTCTCCTAAAGCCCGTGAGGCAGTAGAGGAGCCAGG s panTro1.chr19 81179189 110 + 82489036 AGCAGCCACAGCACTTCAAG-------GGGGCCCTGCCCTTTTCC----------TGCCACCACCCCACCAGGGTCCCCATCTTCCCTTTTGTCTCCTAAAGCCCGTGAGGCAGTAGAGGAGCCAGG s rn3.chr4 51238973 127 - 187371129 AGTCCCCACTGTACTTTAAGCTACACTGAAGTCTGTCCCATCTCCAAACTCTGAGTCCCACCAGCTTCCCAAGGCACCAGACTTCCAAGCTGTGCCCTAAATCTCAAGAGAGCACTGGGGAACCAGC a score=117.0 s hg17.chr17_random 1924710 1 + 2618010 -C s panTro1.chr19 81179299 1 + 82489036 -C s mm5.chr11 120249188 1 + 121648857 -C s rn3.chr4 51239100 2 - 187371129 TT a score=651.0 s hg17.chr17_random 1924711 5 + 2618010 CCTCC s panTro1.chr19 81179300 5 + 82489036 CCTCC s mm5.chr11 120249189 5 + 121648857 CATTC s rn3.chr4 51239102 4 - 187371129 CCTT- s canFam1.chr18 30368059 5 + 66173745 CCCCC a score=234226.0 s hg17.chr17_random 1924716 489 + 2618010 CCTGCCACACCCTGGNAGAAGCCAAGCAG--CAGACACCCCCAG-CTCCTTCAGGGGCATTTATTTCCCGGTCAGAAAAG---AAGCAGGGACAGGCGCCTCTGC---------CTGAGCCTGGCAGACACAACACGAAGACCGGGGATGGGGCGGGGGAGGCACAGGAGACGGCTCTCAGCAATGTGTGCACTTGGTCCCTTGTTTGTTCCTGNGCTGGGT-CAGGGAAGGCCTG-CCGGGGGTGGTGGCACTGAGAGCCTGGGGGAACAGGCGCCAGGCCAG-TGGCCCAG-GGACGGCACGGACGGAGGCAATAAATACTGAT-GGCCAGGCG--GGGCTCCTGGCTG---GGCCCAGGTGGGGTGAGTGAGGC--------------TGTCCATCGAGGGCTCTTGG-GGGGG-TGTGGGCTCTGGGCACTGCCCGC-TGAGACAGAAAAGGCAGAGGCAGG----ACAATACCCAGCCTCCTGGATGGTACTGAGG-TGACTTGAGTTTTGGCAATTTGGCTTTCCCCAAG s panTro1.chr19 81179305 485 + 82489036 CCTGCCACACCCTGG-AGAAGCCAAGCAG--CAGACACCCCCAG-CTCCTTCAGGGGCATTTATTTCCCGGTCAGAAAAG------CAGGGACAGGCGCCTCTGC---------CTGAGCCTGGCAGACACAACACGAAGACCGGGGATGGGGCGGGGGAGGCACAGGAGATGGCTCTCAGCAATGTGTGCACTTGGTCCCTTGTTTGTTCCTG-GCTGGGT-CAGGGAAGGCCTG-CCGGGGGTGGTGGCACTGAGAGCCTGGGGGAACAGGCGGCAGGCCAG-TGGCCCAG-GGACGGCACGGACGGAGGCAATAAATACTGAT-GGCCAGGCG--GGGCTCCTGGCTG---GGCCCAGGTGGGGTGGGTGAGGC--------------TGTCCATCGAGGGCTCTTGG-GGGGGGTGTGGGCTCTGGGCACTGCCCGC-TGAGACAGAAAAGGCAGAGGCAGG----ACAATACCCAGCCTCCTGGATGGTACTGAGG-TGACTTGAGTTTTGGCAATTTGGCTTTCCCCAAG s mm5.chr11 120249194 506 + 121648857 CCTACAAAACCCCAACACAAGCTGCACAGACCACACAATCCCAGACTCCTTCAGGGGTGTTTATTTCCCAGTCAGAAGAG---AAGCAGGGACAGGCTCCTCTGCCTGTTGAGGCTGGGCCTGGCAGACACCACACAGGGACTGGGGATAGGG-AGGGGAGGCACAGGAGACAGCTCCCAAC--TGTGTGAACTTGGTCCCACATTTG-TCCTG-GCTGGGTCCAGGGAGGGTCGGCCCAGGGATGGTGGCACCAAGAACC--AGGGCAGAGGCATCAGGCCAGCTGGCCCA------------AATGGAGGCAATAAATACTGACAGGCCAGGCAC-GAGGTTCAGGCCACGTGGCCCAGGTGAGACAAGTAAGGCTCG---GCTGGCTTTGTCCCTCAGGGGCTCTCTG-TGGGGACAGGGGCTCCGAGTACTGCCTACAAGGGACAGAGAAGGCAGAGGAATGAGGCACCCTACCCTGCCTCCTAGATGGGGCTGGAG--GCATCGAGTTTTGGCAA-TTGACCCTCCCCTAG s rn3.chr10 109982231 506 + 110733352 CCTGGAACAACCCAACACAAGTAGCATAGACCACACCATCCCAGACTCCTTCAGGGGTGTTTATTTCCCAGTCAGAAGAG---AAGCAGGGACAGGCTCCTCTGCCTGTTGAGGCTGGGCCTGGCAGACACCACACAGGGACTGGGGATAGGG-AGGGGAGGCACAGGAGACAGCTCCCAAC--TGCGTGAACTTGGTCCCACGTTTG-TCCTG-GTTGGGTCCAGGGAGGGCCTGCCCAGGGATGGTGGCACCAAGAACC--AGGGCAGAGGCATCAGGCCAGCTGGCCCA------------AATGGAGGCAATAAATACTGACAGGCCAGGCAC-GAGGTTCAGGCCACAGGGCCCAGGTGAGACAAGTAAGGCTCG---GCTGGCTTTGTCCCTCAGGGGCTGTCTG-TGGGGACAGGGGCTCTGAGTACTGCCTACAAGGGACAGAGAAGGCAGAGGAATGAGGCACCCTACCCTGCCTCCTAGATGGGGCTGGAG--GCATTGAGTTTTGGCAA-TTGACCCTCCCCTAG s canFam1.chr18 30368064 498 + 66173745 CCACCCCCGCCCCAG----AGACAAGCAG--CAGACA-CCCTGG-CTCCTTTGGGGGAGTTTATTTCCCGGTCAGAAAAGGAGAAGCAGGGTCAGGCTCCTGAAC------ATCCTAGGCC---CAGGCCTAACAAGG-----GAGGCAAGGG-GAGGGAGGCACAGGGGAGGGCTC-CGAC--TGTGCG-GCTTGGTCCCGCAGCTG-TCCTG-GCTGGGTCCGGGGATGGCCTG-CCGGGGATGGTGGCACC--GAGCCTGGGGGCAGAGGTGGCAGGCCAGGGGGCCCAGAGGACGGCACATATGGAGGCAATAAATACTGACCGACCAGGCACACGACACCAGGCCGGCAGGCCCGGGTGGGACAAGTAAGGCTCGGCCGCTGGCTCTGTCCGGCGAGGGCTGTGTGCTGGGGCCCCGGGCTCCT-GCACCACCCCC-TGGGACAGAGAAGGCAGAGGCGTG----AGGACACCTGGCCTCCCACATGGGAATGGAGGCAACTTCAGTTTTGGCAATTTGGCTTTCCCCAAG a score=100332.0 s hg17.chr17_random 1925205 239 + 2618010 CCGCCGNGAGCCATCTCC------ACAGCCCTGTCCA-GGGAAGGGGGCAGGCTG--GCCAGGCACTGGT------GGGCTGGGGAGCAGCAGCAGCACACCC--CACGTGTCCC-----TGGG--TCACT------GGGTTCGCCACCGGGGAAGGGAC--G---GGGAGGCCACATGCTCATGCAGACAC-AGGGAGTTAGAGGCTAGTGAGGCCCCA--CGGTACAC--TCCACATGTTAAGGCATCA------------------------------------TGGTTAGACGG-GACCGACAG------------CGACAAGG s panTro1.chr19 81179790 238 + 82489036 CCGCCG-GAGCCATCTCC------ACAGCCCTGTCCA-GGGAAGGGGGCAGGCTG--GCCAGGCACTGGT------GAGCTGGGGAGCAGCAGCAGCACACCC--CACGTGTCCC-----TGGG--TCACT------GGGTTCGCCACCGGGGAAGGGAC--G---GGGAGGCCACATGCTCATGCAGACAC-AGGGAGTTAGAGGCTAGTGAGGCCCCA--CGGTACAC--TCCACATGTTAAGGCATCA------------------------------------TGGTTAGACAG-GACTGACAG------------CGACAAGG s mm5.chr11 120249700 242 + 121648857 CTACTG-GAGCCACCCC--------CAACCCTGGCCACGGGGAGGGGAAGAGCTG--GCCAGGCTCG-------------CAGGAAGCAACAGCAGCGCACCC--CAGGCCTCCCTTGGGTGGG--TCACTGGGATGGGGATGGCAGACGAGGCGAGGAC--A---GGGAGAGCACATGCTCATGCAG--AC-AGGGAGTTAAGAGTTAGCGACGGCCCC--CAGCACACGTTCCACATGTTAAGGCATCA------------------------------------TGGTTAGACAGTGACTGACAG------------TGATGGAT s rn3.chr10 109982737 242 + 110733352 CTACTG-GTGCCACCCC--------CAACCCTGGCCACGGGGAGGGGAAGAGCTG--GCCAGGCCCG-------------CAGGAAGCAACAGCAGCACACCC--CAGGCCTCCTTTGGGTGGG--TCACCAGGATGGGGATGGCAGACAAGGCAAGGAC--G---GGGAGACCACATGCTCATGCAG--AC-AGGGAGTTAAGAGTTAGCGACGGCCCC--CAGTACACGTTCCACATGTTAAGGCATCA------------------------------------TGGTTAGACAGTGACTGACAG------------TGATGGAT s canFam1.chr18 30368562 244 + 66173745 CCCCTG-GAGCCACCCCC------ACTGCCCTGGCCA-GGGGAGGGG----GCTG--GCTAGGCCCTGGT------GGGCAGGGGAGCAGCAGCAGCACATCCCACACACCTCCC-----CGGG--CCACG------GGGATTGCGGAGGGGGCAAGGACCGG---GGGAGACCACATGCTCATGCAGACACGGGGGGGTTAGAGGTTAGTGACGGCCCCCACAGCACACGTTCCACATGTTAAGGCATCA------------------------------------TGGTTAGACGGTTACGGACAG------------CGATGGAT s galGal2.chr1 143487843 288 - 188239860 CCGCCG-CGCACGCACCCTGCGGAACAGC---------GTGAGGGTG----GCCGCCGTCACGCCGTAGTGCTCCCGCACCGCGGAACTGCTGCTGAGCGCGA--AGGGCACCTC-----CGGGATCCGCG------CGGCCACCAGGCGGAGCTGCGAC--ACCTCGGGGCTCTCCGGCTCCTGCGGGCAC-AGGGGG--AGAGGGCGGTCAGAG------CGGCGCCC--CGCCGGCGTAAAGGCGACACCTgccggccgccccgggagccgcccgcggggcgccTCGCTCCGCCATTTCCCGCAGCTGCTTCCTCCTCGTCTTCC a score=-4630.0 s hg17.chr17_random 1925444 61 + 2618010 GGGCTGGCCAG---------GGAGCAGCG-GGGCTGGAGGACGGCC-----CGGCCCCCACGAGGCCGTGCATC-----CC s panTro1.chr19 81180028 61 + 82489036 GGGCTGGCCAG---------GGAGCAGCG-GGGCTGGAGGACGGCC-----CGGCCCCCACGAGGCCGTGCATC-----CC s mm5.chr11 120249942 34 + 121648857 GACCTGGCCAG---------GGAGTGGTG-GGACTAGAGGACAG------------------------------------- s rn3.chr10 109982979 33 + 110733352 GACCTGGCCAT---------GGAGTGGTG-GGGCTAGAGGACG-------------------------------------- s canFam1.chr18 30368806 66 + 66173745 GAACTGACCGG---------GGACAGGTGAAAGCAGGAGGGTGG-C-----TGGCCCCCAAAAGGCCTCGAATCATGCACC s galGal2.chr1 143488131 65 - 188239860 TCCCCGCGCAG---------GGAGCCGCG-GGGCTGCAGTGCGACCC-CTGCGCACGCTGCGGTGATGTGAAGC-----CC s fr1.chrUn 220814201 70 - 349519338 GGACTGAGAAGACGCCATCTGGATCGGTG-GAAGGGGGGGGTTAATCTCTTCAAACAGCAGAATATCTGAC---------- a score=26448.0 s hg17.chr17_random 1925505 181 + 2618010 ACACCCCAGCTCCACCCC--GGAGCAGCAGA--------CGCACACGTCCAGGGGCAACCACGGGGCCT--GGAGAA---TGGC--TGCTCCG---CTCCCTCCT-GAAGCCAGNCNTCGGG-----TGTGACGGGGAGATA-------GAACNTGG-GGGGCACAGAAAGGGCAGCAGAGGCCTGGCTGCGG-----------CCTCTCTCCCCCACAGCACAGG s panTro1.chr19 81180089 181 + 82489036 ACACCCCAGCTCCACCCC--GGAACAGCAGA--------CGCACACGTCCAGGGGCAACCACGGGGCCT--GGAGAA---TGGC--TGCTCCG---CTCCCTCCT-GAAGCCAGGCCTCGGG-----TGTGACGGGGAGATA-------GAACCTGG-GGGGCACAGAAAGGGCAGCAGAGGCCTGGCTGCGG-----------CCTCTCTCCCCCACAGCACAGG s mm5.chr11 120249976 169 + 121648857 ATAGCCCAGCCCTTCCCCATGCTGCGACAGA-------------------------GACAAGGTGGGCT--GGACAACCCTGACAGTGTTCTG---TTCCATTCTAGAAGCCAGGGCCTGAG--------GAAGGGAAGACA---GAGGGAACCTGGAGGGACACAGCAG----ATTGGAGGCCTGGGC-TGG-----------AACCCCTCCCCCACTGCACAGG s rn3.chr10 109983012 184 + 110733352 ACAGCCCAGCCCAGCCCC--ACACTGAGGGT--------TGCTCAGCTGGAACAGAGACAAGGTAGGCC--GGGCAACCCAGACAGCGTCCTG---TTCCATTCTAGAAGCCAGGGCCTGAG--------GAGGGGAAGACA---GGGGGAACCTGGAGGGACACAGCAG----ATTGGAGGCCTGGGC-TAG-----------AACCCCTCCCCCACTGCACAGG s canFam1.chr18 30368872 210 + 66173745 CCACCCCACCCCCACCCC--GGAAGAAGAGA-------AAGAACAGGATTCAGGGCTACTGCGAAGGCCCACAGGGACCCGAGCACCCCCACGAGATTCCCTCGGAAAAGCCAGGGCCTCAG------GTCAGGTGAGGACAGGTGGGGGAACATGAAGGGGTACGGAAGGGGAGGTGGGGGCCTGGCC-TGGAGGCTCCCTCCCCCCTCCCCCCCCCAGCACAGG s fr1.chrUn 220814271 162 - 349519338 ACATCCAGGGCTGGGTCT--GAGGCGGGAAGTGCTACATGGCACGGGTCAGTGGGGGAGTGGGGGGGGG--GGGCAGAGCGGGT--CGCTCTG--------------AAGC----ACCTAGGGGAACCATGATGGGCCGACA--------AACACTGTGGGGGAGGGAGG-------GAGGGTCTG----CTA---------------------CTACTGCTGATG a score=28359.0 s hg17.chr17_random 1925686 171 + 2618010 ---CAGAAGCAGCAACGAGACA--GGAGACCGAGGAGGCT-GGGCCT---GTG----------GGTGGGGG---------AGGGCTGAGGAGGGGGGTCGGAGGCANCTCGGTT--GAGCCAGGCCAGGGAGGCGGAC-CAGGGTGGGA----GGGGCACGGAGGGCCTGTCAGCACTTTGGTATGGG----GAGGGGAGGGGCTGGGGG- s panTro1.chr19 81180270 170 + 82489036 ---CAGAAGCAGCAACGAGACA--GGAGACCGAGGAGGCT-GGGCCT---GTG----------GGTGGGGG---------AGGGCTGAGGAGGGGGGTCGGAGGCA-CTCGGTT--GAGCCAGGCTAGGGAGGCGGAC-CAGGGTGGGA----GGGGCACGGAGGGCCTGTCAGCACTTTGGTATGGG----GAGGGGAGGGGCTGGGGG- s mm5.chr11 120250145 158 + 121648857 ---CAGAAGCAGCAATGTGACACTGGAGACCACAG------GGGCCT---GCG----------GGCAGGAG---------------GTGGAGGAGGGGCAGA-------CAGGA--GAGCT-GACTGCCTGAGTGGAC-TAGGGAGGAATGACGGGTGAGGGAGGTCCTGTCAGCACTTTGGTTTGGG----GTAGGTAGGGGGTTAGGG- s rn3.chr10 109983196 154 + 110733352 ---CAGAAGCAGCAATGTGACACTAGAGACCACAG------GGGCCT---GCG----------GGCAGGAG---------------GTGGAGGAGGGGCAGA-------CAGAA--GAGCT-GACTGCCTGAGTGGAC-TAGGGAGGAA----TGGTGAGGGAGGTCCTGTCAGCACTTTGGTTTGGG----GTGGGTAGGGGTTTAGGG- s canFam1.chr18 30369082 128 + 66173745 ---CAGAAGCAGCAAGGCGA----GACCACCGAGGAGGCTGGGGCCT---GCG----------GGGTGGGG-------------CCGGGAGGGATGG---GA-------AGGGT--AGGCC-------------------AGGGAGAGC--------------ATACCCGTCAGCACTTTGGTAAGGG----GTTGGGATGGGGTGGGGG- s galGal2.chr1 143491449 178 - 188239860 ---CAGAAGAAGCAGCAAA-----GGCCACCTGC-------AGGCCT---GTGCGTCAACCAAGGCTGGCACAGAGCCCCAGCACCCACGAGGAGAGCTGCA-------AGGGCTGTGGCC-GGCCGTGGTGGC------AGGATGGAGCAGCGTGGTGGGCATGGCCCACCTGGAGACTGGTGCAGGAGGCAAGGGGACGGGGAGGGGG- s fr1.chrUn 220814433 136 - 349519338 CTACAGCTGCTGTCAGGGAGGAGGGGACAC-----------GGGCGTAAAACG----------AGTAGGAG---------------GGCATGAAATGTAAAA-------ACAAT--GGA---GGCAAAAATGGTGGACATAGGGTAGTG----GTGGAGAGGAGGG-------------------GGG----GTGGGCATGGAGCTGGGGG a score=-15042.0 s hg17.chr17_random 1925857 58 + 2618010 GGNACACATNCCNGCCNNGTCCGTC-GTCCGTCCGTCAGTCTGCCCTGCCCGCCT-CTGG- s panTro1.chr19 81180440 54 + 82489036 GG-ACACAT--CCGCC-TGTCCGTC-GTCCGTCCGTCAGTCTGCCCTGCCCGCCT-CTGG- s mm5.chr11 120250303 49 + 121648857 TG-GGGCAT----GTC-GGTCCTTCTGTCTGTCCGTC-----GCCCTGCCCGTCTCCCAG- s rn3.chr10 109983350 49 + 110733352 AG-GGGCAT----GTC-GGTCCTTCTGTCTGTCCGTC-----GCCCTGCCCGCCTCCCAG- s galGal2.chr1 143491627 12 - 188239860 --AAGGCAA----ATG-GG------------------------------------------ s fr1.chrUn 220814569 31 - 349519338 --------------------ATTTCCATCCTCTTG-------GCCCCGAACAC---AAAGG a score=776.0 s hg17.chr17_random 1925915 2 + 2618010 CT s panTro1.chr19 81180494 2 + 82489036 CT s mm5.chr11 120250352 2 + 121648857 CT s rn3.chr10 109983399 2 + 110733352 CT s canFam1.chr18 30369329 2 + 66173745 CA s galGal2.chr1 143491639 2 - 188239860 GT s fr1.chrUn 220814600 2 - 349519338 CC a score=13506.0 s hg17.chr17_random 1925917 12 + 2618010 GG-GCTCAGTCCT s panTro1.chr19 81180496 12 + 82489036 GG-GCTCAGTCCT s mm5.chr11 120250354 13 + 121648857 GGAGCTCAGTCCT s rn3.chr10 109983401 13 + 110733352 GGAGCTCAGTCCT s canFam1.chr18 30369331 12 + 66173745 GG-GCTCAGTCTT s galGal2.chr1 143491641 12 - 188239860 GA-GCTCATTCTG s fr1.chrUn 220814602 12 - 349519338 TT-TTTTAGTCTG s danRer1.chrNA 73479286 12 - 390413307 GG-GCTCAATCTT a score=360371.0 s hg17.chr17_random 1925929 216 + 2618010 TCCAGTCCTTCTTGATGGTGAGATTCCACTCCCAGGACAGGTGGTCGGTCTNGTCGTCGTCTGTGAAGCGGGACTTGATGCTGTAGCTGCCCCGGGCCAGCATACCCTTGGGTGCCTCCTCCACGGGGGTCAGGAACTCGTACTCCTCGGCCCGGGGCCCATAGCTGCCTACCATGTAGTCAGTCTTGTCAACTGC--------GGCACAA--NGG-----------------------------AAGAGGGCGG s panTro1.chr19 81180508 215 + 82489036 TCCAGTCCTTCTTGATGGTGAGATTCCACTCCCAGGACAGGTGGTCGGTCTTGTCGTCGTCTGTGAAGCGGGACTTGATGCTGTAGCTGCCCCGGGCCAGCATACCCTTGGGTGCCTCCTCCACGGGGGTCAGGAACTCGTACTCCTCGGCCCGGGGCCCATAGCTGCCTACCATGTAGTCAGTCTTGTCAACTGC--------GGCACAA---GG-----------------------------AAGAGGGCGG s mm5.chr11 120250367 214 + 121648857 TCCACTCCTTTTTGATGGTGAGATTCCACTCCCAGGACAGGTGGTCAGTCTTGTCGTCATCTGTGAAGCGCGACTTGATGTTGTAACTGCCCCGAGCAAGCATGCCTTTGGGAGCCTCCTCCATGGGTGTCAGGAACTCATACTCCTCGGCCCTCGGCCCATAGCTCCCGACCATGTAGTCAGTCTTGTCAACTGA--------GGGACA----GG-----------------------------AGAGGCAGGA s rn3.chr10 109983414 214 + 110733352 TCCATTCCTTTTTGATGGTGAGATTCCACTCCCAGGACAGGTGGTCAGTTTTGTCATCATCTGTGAAGCGGGACTTGATGTTGTAACTGCCCCGAGCAAGCATGCCTTTGGGGGCCTCTTCCATGGGTGTCAGGAACTCATACTCCTCAGCCCTTGGCCCATAGCTCCCGACCATGTAGTCAGTCTTGTCAACTGT--------GAGACA----GG-----------------------------AAAGGCACAG s canFam1.chr18 30369343 252 + 66173745 TCCATTCCTTTTTGATGGTAAGGTTCCACTCCCAGGACAGGTGGTCAGTCTTGTCGTCGTCTGTG-AGCGGGACTTGATGTTGTAGCTGCCGCGAGCCAACATACCCTTGGGTGCCTCCTCCATGGGGGTCAGAAACTCGTACTCCTCTGCCCGGGGCCCGTAGCTCCCCACCATGTAGTCGGTCTTGTCAACTGTGTGCAGGAGACACAC--TGGTCACCGGTGCTCCCGATCCCACCAGGGCTAAGGGCACAC s galGal2.chrUn 89209405 218 - 165033910 TCCATTCCTTCTTGATGGTCAGGTTCCACTCCCAGGACAGGTGGTCAGTCTTATCATCATCTGTGAATTTGGATTTGATGTTGTAGCTGCCCCGGGCCAGCATGCCCTTAGGAGCTTCTTCCATGGGGGTCAGAAACTCGTATTCCTCTGCTCGGGGGCCATAGCTCCCAACCATGTATTCAGTCTTGTCAACTAG--------GAGAAAAAGAGG-----------------------------AAGATGGAAG s fr1.chrUn 220814614 215 - 349519338 TCCAGTCTTTCTTGATGTTGAGGTTCCATTCCCAGGACAGCAGATCGTGCTTGTCATCGTCAGTGAACTTAGATTTGATGTTATATTGGCCGCGTGCCAACAGTCCTGTGGGAGCTTCTTCCAAAGAGGTCAGGAAGTCATATTCAGCATCTCGGGGGCCGTAGCTGCCCACCATGTAGTCTGTCTTATCAACTGTG-------GACAGAA---GA-----------------------------AAGTGGACA- s danRer1.chrNA 73479298 216 - 390413307 TCCAGTCCTTCTTGATGTTCAGGTTCCACTCCCAGGACAGGTGGTCGTGCTTGTCGTCGTCGGTGAACTTGGATTTGAGGTTGTAGGTGCCGCGGGCCAGCATGCCTTTGGGTGCCTCCTCTAGGGGCGTCAGGAACTCGTACTCGTCCGGCCGGGGCCCGTAGCTGCCCACCATGTAGTCGGACTTATCAACTGAA-------AACAAGA---GA-----------------------------CAGGAGACGG a score=450.0 s hg17.chr17_random 1926145 3 + 2618010 TCA s panTro1.chr19 81180723 3 + 82489036 TCA s mm5.chr11 120250581 3 + 121648857 TTA s rn3.chr10 109983628 3 + 110733352 TTA s canFam1.chr18 30369595 3 + 66173745 ACC s galGal2.chrUn 89209623 3 - 165033910 CTA a score=-809.0 s hg17.chr17_random 1926148 2 + 2618010 GC s panTro1.chr19 81180726 2 + 82489036 GC s mm5.chr11 120250584 2 + 121648857 CT s rn3.chr10 109983631 2 + 110733352 CG s canFam1.chr18 30369598 2 + 66173745 AC s fr1.chrUn 220814829 2 - 349519338 GC a score=-2673.0 s hg17.chr17_random 1926150 63 + 2618010 GGCCCCGC-TTCCCCGCCNTGGCAGCACGCACCCAAGCGGCCCCCTCTGCCC-TGCCC--------------------------------------GGGG-----------CCC s panTro1.chr19 81180728 62 + 82489036 GGCCCTGC-TTCCCCGCC-TGGCAGCACGCACCCAAGCGGCCCCCTCTGCCC-TGCCC--------------------------------------GGGG-----------CCC s mm5.chr11 120250586 51 + 121648857 GGTGCTGCACGCCCCTCC---------CAGGCCCAATGGCTCCCCACTCTAT-GGCCC--------------------------------------G---------------CC s rn3.chr10 109983633 52 + 110733352 GGTGATACAAGTCCCTCC---------AAGGCCCACTGGCTTCCCGCTCTATGGGCCC--------------------------------------G---------------CC s canFam1.chr18 30369600 111 + 66173745 CATCTTCC-TCTCCCTCC-TGGTCCCAGAGCCCTGGGCGGCCACCTCCACCC-TGCCCCCTCCCACAGGCCACCTAAGTGGTGCCACGCCATCTCGGGGGCAGGGCCAACCCCC a score=136693.0 s hg17.chr17_random 1926213 74 + 2618010 CACTCACTCTTGACGCCTTTCCTGTACGTATGCTGGATGTACTTCATGCCGGACACTATCTCTCGGTTAACCTG s panTro1.chr19 81180790 74 + 82489036 CACTCACTCTTGACGCCTTTCCTGTACGTATGCTGGATGTACTTCATGCCGGACACTATCTCTCTGTTAACCTG s mm5.chr11 120250637 74 + 121648857 CACTCACTTTTGACCCCTTTCCTGTATGTGTGTTGGATGTACTTCATGCCGGACACGATCTCTCTGTTCACCTG s rn3.chr10 109983685 74 + 110733352 CACTCACTTTTGACCCCTTTCCTGTATGTGTGCTGGATGTACTTCATGCCTGACACGATCTCTCTGTTCACCTG s canFam1.chr18 30369711 74 + 66173745 GACTCACTCTTGACGCCTTTCCTGTACGTGTGCTGGATGTACTTCATGCCCGACACAATCTCCCGGTTCACCTG s galGal2.chrUn 89210054 74 - 165033910 CACTTACTTTTCACTCCTTTCCGGAACGTGTGCTGAATATACTTCAACCCTGACACAATCTCCCTGTTAACCTG s fr1.chrUn 220815208 74 - 349519338 CACTCACTCCTCAATCCTTTCCTGTATGTTTGCTGTACATACTTGAGGCCTGAAACGATCTCTCGGTTCACCTG s danRer1.chrNA 73482008 74 - 390413307 CACTTACTCTTCACCCCTTTCCTGAAGGTCTGCTGTACATACTTCAACCCGGAGACGATCTCTTTGTTTACTTG a score=-50316.0 s hg17.chr17_random 1926287 86 + 2618010 C-AGGACCCGAAGCGAGGATCAG---G--------------------GAAGGTCGGTC-CGG---------------------------------ACCCC---AGCCCCAGCCCC---------------GCCTCCATTCC------CTGGCCAC-----------------------------------------------AGCAGCCTGTA---------GC s panTro1.chr19 81180864 87 + 82489036 C-AGGACCCGAAGCGAAGATCAG---G--------------------GACGGTCGGCC-CGG--------------------------------AACCCC---AGCCCTAGCCCC---------------GCCTCCATTCC------CTGGCCAC-----------------------------------------------AGCAGCCTGTA---------GC s mm5.chr11 120250711 81 + 121648857 TGGGGACACAGAGCCAGGGTCAG--------------------------CTGCCTTCC-CAG---------------------------------GCTTG---CCCCTCTGCCCC-------------------TTGTTTC------CAGGCCTCT----------------------------------------------CAAAGCCCCCA---------CC s rn3.chr10 109983759 72 + 110733352 TTGGGACACAGAACCAGGGTCAG--------------------------CTGGTTTCC-CAT---------------------------------TCTTG---CTCCTCTGCCCC-------------------CCTTTCC-------------------------------------------------------------CAAAGCCTTCT---------CC s canFam1.chr18 30369785 76 + 66173745 C-AGGGGGAGAACCCAGGCAGAGCTCG--------------------GTGGGGCCCTC-CAG---------------------------------GCCCGACACCTCCCAGCTCC-----------------------TCC-------------------------------------------------------------CACAGCCTCTG---------CC s galGal2.chrUn 89210128 165 - 165033910 CAGAGACAAGCAAGGACTGTCAA---A--------------------GACAGATCTCCACAC---------------------------------GCTGC---CCACCCCACCCACTGCAGGGAAATATTTCCTCCATCACACCCATCTGGGAGCCCTACGATGGAGTTGCAGTAATCAGGTGCTCCAAATTTCACCAGTTGTTCAGTTTGCAGATCTGAATCC s fr1.chrUn 220815282 155 - 349519338 T--GGACACACAGACAGGATTGG---GTCTTAAAAGCTGTGCGTTGCATCGACTATTT-CATAAGCAAGATGTAACATTAAATGCAAAATCTGGAGCAGC---CGACTCAATGCA-----------------AACCATCACACTATTTTAATATTTAAA-------------------------------------------GGCAGTTTCTTGTTAAATACGC a score=146291.0 s hg17.chr17_random 1926373 83 + 2618010 TTACCCGGAAAGAGATTTTTATCCGGTACTCCACACCCTCCTTCAGCACAAACGACTGCTTCTTGAAGCTCTCCAGGTCGCCT s panTro1.chr19 81180951 83 + 82489036 TTACCCGGAAAGAGATTTTTATCCGGTACTCCACACCCTCTTTCAGCACAAACGACTGCTTCTTGAAGCTCTCCAGGTCGCCT s mm5.chr11 120250792 83 + 121648857 TTACCCGGAAAGAGATTTTTATCCGGTACTCCACACCTTCCTTCAAGACAAACGACTGTTTCTTGAAGCTCTCCAGATCACCT s rn3.chr10 109983831 83 + 110733352 TTACCCGGAAAGAGATTTTTATCCGGTACTCCACACCTTCCTTCAACACAAATGACTGTTTCTTGAAGCTCTCCAGATCACCT s canFam1.chr18 30369861 83 + 66173745 TTACTCGGAAAGAGATCTTTATCCGGTACTCCACGCCCTCCTTCAGCACAAAGGACTGCTTCTTGAAGCTCTCCAGGTCCCCT s galGal2.chrUn 89210293 83 - 165033910 TTACCCTAAAGGAGATTTTTATCCGGTATTCCACACCTTCCTTCAGCACGAACGCCTGCTTCTTATAGCTCTCCAGGTCACCT s fr1.chrUn 220815437 83 - 349519338 TCACCTTAAAGCTGATCTTTATCTTGTATTCAACTCCCTCTTTCAGAACAAAGGCCTGTTTCTTCAAAGCTTCCAGGTCTCCT s danRer1.chr3 19553091 83 - 31142523 TTACCTTGAAGTGGATTTTCACCCTGTATTCGACTCCCTCCTTCATGGTGAAGCACTTCTTCTTCAGAGCATTGAGGTCACCT a score=100.0 s hg17.chr17_random 1926456 1 + 2618010 G s danRer1.chr3 19553174 1 - 31142523 G a score=-11242.0 s hg17.chr17_random 1926456 2 + 2618010 G--------------------------------T s panTro1.chr19 81181034 2 + 82489036 G--------------------------------T s mm5.chr11 120250875 5 + 121648857 GTA-----------------------------TT s rn3.chr10 109983914 5 + 110733352 GTA-----------------------------TT s canFam1.chr18 30369944 34 + 66173745 GTGCCCAAGAAGATTGCACTAAAAGGCTCAGCTG s fr1.chrUn 220815520 2 - 349519338 GT-------------------------------- a score=-11451.0 s hg17.chr17_random 1926458 127 + 2618010 TGGGGGG------------------------------ACCTCCCCCTCAATGAC----TGCC-----CAG--------------CAGCCCTGCG------------CGAAGCCCCAGCCCTG--------------CGCGGC----------CC---------------CCTGGCTGCACTTCCCGAGATCCCCACCAGGGGCCGNCCCG----------------------------------------------GACCCCCGC-GGC-----------------CGCAGGG------------NC s panTro1.chr19 81181036 135 + 82489036 TGGGGGG------------------------------ACCTCCTCCTCAA--------TGCC-----CAGCAGCCCTGGGGCCCCAGCCCTGCG------------CGAAGCCCCAGCCCTG--------------CACGGC----------CC---------------CCTGGCTGCACTTCCCGAGATCCCCACCAGGGGCCG-CCCG----------------------------------------------AACCCCCGC-GGC-----------------CGCAGGG-------------C s mm5.chr11 120250880 209 + 121648857 GAGGAGG------------------------------AGTCTCCGCTGACTGCT----TGCT-----TGA------AGGGCTCTCCACCCTGCTACATTCACTCTCCCCAGCCCCTTCCCTGACACAAAGCAGAGCTTCGGC-------AAGCC---------------CCTAGCTGCACTTCCCCTCTTCTCCACCAGAGGGCA-TCAGTGCAGAA-------------AATTATTTTTAGGGGTAGAGGCAA--GATGCCAGCTGGCCCCA-------------CCCAGGGATTCTAATAC--CC s rn3.chr10 109983919 208 + 110733352 GAGGAGGTGGCTCAGCTGGTTGCTTGAAAGGTTTTCCACCCTGCCCCCACACCCACTTTCCC-----TAG-----------CTCCTTCCCTGAC------------ACAAAGCAGAGCCTTT------------------GC-------AAGCC---------------CTTAGCTGCACTTCCCCTCTGCTCCACCAGAGGGCA-TCAGTGCAGAAAATTATTTTTAGGG-------------GTAGTGGCAA--GATGCCAGCTGGCCCCA-------------CCCAGGGACTCTAATAC--CC s canFam1.chr18 30369978 215 + 66173745 CAGGAAG------------------------------CTGCCCACCTCAGCATC----TCCCATCTGCAG-----------CGCCTGGCGCTCC------------TTCGGCCCCCACCCTGACCCCACCCGCCGCCCAGGTCCCTCCAAAGCCAGAGCCTGCAGACTTCCTGGTTGCGCTTCTCGCGCCCCCCACAAGGGGGCA-CCCG---------------------------------CGTTCCGAGAACTAGTTTCAGC-GGAAACAGCAGGGTGGCAGGCGGGAGGACCTCAGTGATGCC a score=4050.0 s hg17.chr17_random 1926585 4 + 2618010 ACTC s panTro1.chr19 81181171 4 + 82489036 ACTC s mm5.chr11 120251089 4 + 121648857 ACTC s rn3.chr10 109984127 4 + 110733352 ACTC s canFam1.chr18 30370193 4 + 66173745 ACTC s fr1.chrUn 220816385 4 - 349519338 ACCA a score=79219.0 s hg17.chr17_random 1926589 93 + 2618010 ACCCGTCAGGTCCA-------GCTCCAGGGGGCCCGGGGCCGAGCTGCACACCAGGGTCAGGCCAGTCACCN-------ACGACGTTGGGGACGTTGGGGTCTGGGG s panTro1.chr19 81181175 92 + 82489036 ACCCGTCAGGTCCA-------GCTCCAGGGGGCCCGGGGCAGAGCTGCACACCAGGGTCAGGCCAGTCA-CG-------ACGACGTTGGGGACGTTGGGGTCTGGGG s mm5.chr11 120251093 92 + 121648857 ACCTGTCAGGTCCA-------GTTCCAGAGGGCCTGGGGCAGTGCTGCATACCAAGGTCAGTCGAGTCA-CA-------ATGACATTGGGGACGTTGGGGTCTGCAG s rn3.chr10 109984131 92 + 110733352 ACCTGTCAGGTCCA-------GTTCCAGAGGGCCTGGGGCAGTGCTGCACACCAAGGTCAAGCGGGTCA-CA-------ATGACGTTGGGGACATTGGGGTCTGCAG s canFam1.chr18 30370197 92 + 66173745 ACCTGTCAGGTCCA-------GCTCCAGGGGGCCCGGGGCTGTGCTACACACCAGGGTCAGGCGGGTCA-CA-------ACAACATTGGGGACGTTGGGGTCTGCGG s galGal2.chrUn 89211234 98 - 165033910 ACCCCTCAGTTGCACTGCTCTGTTCCAGGGGCCACTGATCAGCACTG--------GGGCAGTGCAGACA-CCGGCCCTTATGCTCCCAGCTACACTCACACCAAGTC s fr1.chrUn 220816389 92 - 349519338 ACCTTTCAGGTCCA-------GGATCAGGGGTTTTGGAGAGCCTTCGCAGACCAGAGACATACCAGTGA-CC-------TGGACATTGGGAATAGTGGGATCTGAAG a score=-4230.0 s hg17.chr17_random 1926682 83 + 2618010 AGTGACAGC---AGGTGAGGGCCCCACCCCCNA----------------------CCAGTGGAAG-TA--GGGGCTGGGG--AGCGGCAAGACAGCTGGAGTGAACGGGCGGC s panTro1.chr19 81181267 82 + 82489036 AGTGACAGC---AGGTGAGGGCCCCACCCCC-A----------------------CCAGTGGAAG-TA--GGGGCTGGGG--AGCGGCAAGACAGCTGGAGTGAACGGGCGGC s mm5.chr11 120251185 102 + 121648857 AGTGAGAGTTAAGAGTCAGAGTCCCATCCCTTAAGATTTTTCTTTTTAAACTCACTCCTTGGAAG-AG--TGGTCTGGAA--AGAGACTGGGCA-CAGGTTTAGATGA----- s rn3.chr10 109984223 101 + 110733352 AGTGAGAGTTAAGAGTCAGAGTTCTGATCCTTA-AGATTTTTTTTTTCAGCTCACTTCCTGGAAG-AG--TGGTATGGAA--AGAAGGT-GGCAACAGGGTCAGGTGG----- s canFam1.chr18 30370289 87 + 66173745 AGGGAGAGT---GGGTTGGAGTGCCTCCCCACC----------------TCCCACTTGCTGGAGGCTG--GGGGGTGGGGCTGGCGGCTGAAACCCAGAAGTGACAAG----- s galGal2.chrUn 89211332 76 - 165033910 ACACAGAGC---TGGGGAGAGAACAGCTCCCAG----------------------ACAGGAGCAG-AGCTGAGGCTGGGG--AGCCACAGG----TGGAGCTCTGTCA----- a score=-9997.0 s hg17.chr17_random 1926765 21 + 2618010 CACCCGGCTC-------CCGCAGCCCA-G s panTro1.chr19 81181349 21 + 82489036 CACCCGGCTC-------CCGCAGCCCA-G s mm5.chr11 120251287 17 + 121648857 CATCCTTCCT-------CCA-AGCC---- s rn3.chr10 109984324 17 + 110733352 GATCCCTCCT-------TCA-ACCC---- s canFam1.chr18 30370376 26 + 66173745 CATCCCTTTTGGTGCTGCCTCAGCCC--- s galGal2.chrUn 89211408 24 - 165033910 CTGCCGTCAC-----TGCCACGTCCTACG s fr1.chrUn 220817354 15 - 349519338 CATCCACCCC-------CTGCA------- a score=235136.0 s hg17.chr17_random 1926786 141 + 2618010 ACTCACCTGCGGAAANCGGCCACGCGGCCCAGCAGGGCCTCCTTGTACTTTCGCAGGCTCTCGTCGTCCTTGTCCAGCTCCTGGATCTCCTGGATGCTCTTCTGGGCCGGGGGCTTGTAGTTNGACCGAGTGCTCATCCTC s panTro1.chr19 81181370 139 + 82489036 ACTCACCTGCGGAAA-CGGCCACGCGGCCCAGCAGGGCCTCCTTGTACTTTCGCAGGCTCTCGTCGTCCTTGTCCAGCTCCTGGATCTCCTGGATGCTCTTCTGGGCCGGGGGCTTGTAGTT-GACCGAGTGCTCATCCTC s mm5.chr11 120251304 139 + 121648857 ACCTACCTGCAGAGA-CAGCTACTCGGCCCAGCAGGGCCTCCTTGTACTTTCGGAGGCTTTCATCGTCCTTGTCCAGTTCCTGGATCTCCTGGATGCTCTTCTGGGCTGGAGGCTTGTAGTT-CACAGAGTGCTCATCTTC s rn3.chr10 109984341 139 + 110733352 ACCTACCTGCAGAGA-CAGCTACTCGGCCCAGCAGGGCCTCCTTGTACTTTCGAAGGCTTTCATCATCCTTGTCCAGTTCCTGGATCTCCTGGATGCTCTTCTGGGCTGGAGGCTTGTAGTT-CACAGAGTGCTCGTCTTC s canFam1.chr18 30370402 139 + 66173745 ACTTACCAGCAGACA-CGGCTACGCGGCCCAACAGGGCCTCCTTGTACTTGCGCAGGCTCTCGTCATCCTTGTCCAGCTCCTGGATCTCCTGGATGCTCTTCTGGGCAGGGGGCTTGTAGTT-GACAGAGTGCTCATCCTC s galGal2.chrUn 89211432 139 - 165033910 GCTCACCTGCAGTCA-CGGTGACAGCACCAAGCAGTGCCTCCTTGTACTTGCGCAGGCTCTCATCATCCTTGTCCAGCTCCTGGATCTCCTGGATGCTCTTCTGGGCAGGTGGCTTATAGTT-GACTGAGTGTTCATCCTC s fr1.chrUn 220817369 134 - 349519338 --TTACCAGCAGACG-TGACCCCAGGTCCGAGCAGGGTTTCCTTATATTTGCGCAGGCTCTCATCATCTTTATCCAGATCTTGGATCTCCTTCACCGATTTCTGGGCTGGCGGTTTATAATT-CACCG---GCTCTGGCTC s danRer1.chr3 19574352 139 - 31142523 ACCAACCTGCCACCA-CAGGTCCTGAGCCCAGGAGGGTTTGCTTGTACTTAGTCAGGCTTTCGTCATCCTTGTCCATTTCCTGGATCTCCTGAAGGCTCTTCTGTGCTGGAGGCTGGTAGTT-CAGATCTGGCTCATCTTC a score=-660.0 s hg17.chr17_random 1926927 3 + 2618010 CNN s panTro1.chr19 81181509 1 + 82489036 C-- s mm5.chr11 120251443 1 + 121648857 C-- s rn3.chr10 109984480 1 + 110733352 C-- s canFam1.chr18 30370541 1 + 66173745 C-- s galGal2.chrUn 89211571 1 - 165033910 C-- s fr1.chrUn 220817503 1 - 349519338 C-- a score=96431.0 s hg17.chr17_random 1926930 59 + 2618010 TCGTTCTCCGCTGCAATCTGGGCCAGCTGCTCGGCTGTGGGCTCCTGCTCAGCCATGCT s panTro1.chr19 81181510 59 + 82489036 TCGTTCTCCGCTGCAATCTGGGCCAGCTGCTCGGCTGTGGGCTCCTGCTCAGCCATGCT s mm5.chr11 120251444 59 + 121648857 TCATTCTCTGCAGCTATCTGCGCAAGCTGCTCAGCAGTGGGTTCCTGTTCTGCCATGCT s rn3.chr10 109984481 59 + 110733352 TCATTCTCTGCAGCTATCTGAGCGAGCTGCTCAGCAGTGGGTTCCTGTTCTGCCATGCT s canFam1.chr18 30370542 59 + 66173745 TCGTTCTCAGCTGCGATCTGCGCGAGCTGCTCAGCTGTGGGCTCTTGCTCAGCCATGCT s galGal2.chrUn 89211572 59 - 165033910 TCATTCTCAGCTGCAATTTGGGCCAGCTGCTCTGCCGTTGGCTCCTGCTCTGCCATCCT s fr1.chrUn 220817504 59 - 349519338 TCGTTTTCTGCAGCGATGGCTGCAAGCTGCTCTGGAGTCACCTCATCCTCGGCCATGTC s danRer1.chrNA 316953212 59 + 390413307 TCGTTCTCGGCTGCGATAGCGGCTAACTGCTCTGGTGTGGGCTCCTGCTCGGCCATGAT a score=1960.0 s hg17.chr17_random 1926989 2 + 2618010 CA s panTro1.chr19 81181569 2 + 82489036 CA s mm5.chr11 120251503 2 + 121648857 TA s rn3.chr10 109984540 2 + 110733352 CA s canFam1.chr18 30370601 2 + 66173745 CA s galGal2.chrUn 89211631 2 - 165033910 CA s fr1.chrUn 220817563 2 - 349519338 TG a score=7798.0 s hg17.chr17_random 1926991 23 + 2618010 --AGCTTAGC--CTGGGTCGGGACACC s panTro1.chr19 81181571 23 + 82489036 --AGCTTAGC--CTGGGTCGGGACACC s mm5.chr11 120251505 18 + 121648857 --CCTCTAGC-------TTGGGACACC s rn3.chr10 109984542 18 + 110733352 --CCTCTAGT-------TTGGGACACC s canFam1.chr18 30370603 22 + 66173745 --CTCCTAGC---TGGTCTGGGACACC s fr1.chrUn 220817565 27 - 349519338 GAATCAGAGCGGACGCGTGAGGACACC a score=16763.0 s hg17.chr17_random 1927014 270 + 2618010 TGTGGGCGGGACGGTGACAG-----GCCTTGGA----------------------CCT----GGATCC---CCAACGG-------AGGCGCACT-------------------------TCTGA--------------GCAGGAGTGTG--------------------GGCTGCAGCCGGAGCT-------CCAAAAGGGCTCCA---------AGGGGGCCACCTTCGCTCCTCTCCACCCCCGCGATTCCTGCTCAGGGGCATCCTCTGGGGCAGTGTGAGGTGCCCCCACCCCAGGTATNAACATCTAAGACAAAATGGGAACTGCAGCCGATCATGGGGAGAGAGGACACACC-TCCCCCTCCACGATGGAGGAGGCAGCAG s panTro1.chr19 81181594 269 + 82489036 TGTGGGCGGGACGGTGACAG-----GCCTTGGA----------------------CCT----GGATCC---CCAACGG-------AGGCGCACT-------------------------TCTGA--------------GCAGGAGTGTG--------------------GGCTGCAGCCGGAGCT-------CCAAAAGGGCTCCA---------AGGGGGCCACCTTCGCTCCTCTCCACCCCCGCGATTCCTGCTCAGGGGCATCCTCTGGGGCAGTGTGAGGTGCCCCCACCCCAGGTAT-AACATCTAAGACAAAATGGGAACTGCAGCCGATCCTGGGGAGAGAGGACACACC-TCCCCCTCCACGATGGAGGAGGCAGCAG s mm5.chr11 120251523 223 + 121648857 TGTGGGCGGGGCATGAGCAG-----GACTGTGA-------------------CAGCCT----GGAGGCATTCCACCCT-------AGGCAGAC--------------------------CCTGACACCT---------GCAGGACACCT--------------------GACT------GGAACT-------TTGAGAGGAT------------------GCTGCCACTGC--------------------CCTACGCAGAGGC-CCATTTGAGAGGACTAGA---------ACCCCAAGCA------------ACGAAATGGG-ACCACAGCCTGTTCCTCAGAGAAGCAAAACACCTTTCCTCCCCACTAAGAATAAGCCTCCAG s rn3.chr10 109984560 233 + 110733352 TGTGAGTGGGGCATGAGCAG-----GACTGTGA-------------------CAGCCT----GGAGGCATTCCACCCT-------AGGCAGAC--------------------------CCTGACACCT---------GCAGGGAAAGA--------------------CACTG-----GGAACT-------TTTGAGAGAAGACA-------GGAGGAGGCTGCTGTCACTGC-----------------CGAACCCAGAGGT-CCATTTGAGAGGGCTA----------CACCCCAAGGA------------ACGAAATGGG-ACCACAGCCTGTTCCTCAGAGAAGCAAAATATCTTTTCTCCCCAAGAAGAATAAGCCG---- s canFam1.chr18 30370625 350 + 66173745 TGTGGGCAGGGACAGGGCTGTGTCAGCCTGAAGGGACGCACATCTCCCTCTCCTGCCTCTCAGCAAGC---CCCCCCGCTGGTGCAGGTGCGCTGTACTGAAGGGCCCTCTGCAGGTAACCCGGCCCCTTGTCTGGGCACAAGGGGATGTAAGCCTTCGGGAGGAAAGCAACTGCAGACTCAGCTTCACCCCCCAAACAGGCTCCTAAGGCCCAGAGAGGGCCACACTCCTTGCCCTGC------------CCACCTCGGGGAC-CTGCTGGAAACTGGGACAGAG-----CACCCAGA---------------ACCAAGTGGGGCCTGCAACCCGCTCCTTGAAAAGACCAGGCATC-CCTCTCCCAAGCCTGGGGGAGAAGACAG a score=38497.0 s hg17.chr17_random 1927284 939 + 2618010 CCCCCTGTATGTGTGGGGCGGGGCTAGCAGGCCCCAGAATCAACCGGCGGGGCCCACA-CTAAACCCTCTCTTAGGGTCTTGCCGC--TCTTGAGCTGCCCAGGCCCTCGCCCTAC-----GGGGTAACGGGGCTCGGTATCCCTCAGTAGGGTTGCTCCTCTGGCCGTGGTAGTCACATGTAA---ACGTGTGTGGTCGGCTCAGCGTCATCTTTCAAACAGGATGCC-CCTGGAGCTCGGATGT-TAGGGGCA------GCTAGAATACCGCACGGGG-------------CCACCTGGACACGGGGATCCTAAGTATCTG-CGGTTTCTCCACA-ATTGTGAGGNTCTGTGACCTACAACTTGGGAGCTACCACA------GCCACTCAGTACTCTCGGGCCCNTCTNGTAGATGGTGGGCCCNG-------------AGTGCCCGGGG---------CAGCACTGACCCGGCAGGGGATCTGTCAG----------GCTCAGATCC--------TTCCCGGCAGC----------------GTGGGAGGT---GGGTCAGGGA-----------------------------------------GCAGCACACCCGGGAC-ACC----------------------------------------------CAGGCCGGGGTCC-------------------------------AGGCCGCCCTGCTTCCTCC---------------AGGGGCTGGGG-----CCTCCGCGCCGC--GCGAGGATAGCCGTAGGCGCCGGGATCCT----------AGGGCGCGGCCCNCA----CTTCCGCAGGNC-CCGCAATCCGTGCCGGGCGTG---NCCCGGGCGCTGGGGGAGGCCGNGCCCCAATCNCCGCGTCGCCCCCGAACGCGATGGACCGCGGCTGCCGGCCCG-GCGCCNCCCGCGTCCCCAAGGA--GGGGCCCT---CAGGT--CTGGCCCGGGCCCCACG--NGCCTCGGCGGCCATGAAAGAAGCTCCGGACCG----CTCGGGAGG-GGCCGGCACT---CCCCTGGTCCCCGCCGCCCCTCCG-------GCCCGGGACCCGCANGTGGG-GCCGGGGccgc----------cgccgcccggtcccgccccggccccgccctagcccgcaccgccctggcccgcT--GTCACCGCGCCCCCGCCCGCC-GAGACCCTGCCG----- s mm5.chr11 120251746 918 + 121648857 --------------------------------ACCGAACTGAACTGGCAGACGCAACA-CTAAATC----CCTGGGGTCCTGTTGCTGTCCCTAGCTGCCCAGGCTCTCATCTTACTGGGTTGGGTCATGGAGGTAAGT---TCTCCGACAGGGAGATGCTCTG--TATGTTAGCCACGTGCAGGACAAGGGTCTGTTTGTT----CGTC--CCTTCCAATGGAATACTGTCCTAAGCTCAACTATGTGATGACC------GCTTAAATCC--CAAGAGC-------------CCA-------AAGGGGATCCTAAATACGCA--GGTCTGTCCTCT-CTAGTGAGGGTCTGCG-TATGCAACTTGGGAGCTAGTGCACCGCTTGCAAATAAAT-CTCAGGAGCCTGTTTC--------TGGGCCCTGACCCTAAACCTTTAGTGGCGGTGAGGAACCAACCAGGACGGAAGCGCCTAGATGCCTTTCAGTTCCGCAGATTCCCAAACGT--------CTCTCGGAAACCCA-------------CTGTGATGCCTACAGGCAATGC-----------------------------------------GCAGCGGTCCCGGGAAGAGC----------------------------------------------CCGGCCGTTGTCCCTCTGAGAGGTGTCCGCCAAGGAAACACATAAAGCGGCGGTCCGAAACCC---------------GGAGGCTACAGACAACCCCACCCGACGC---CAAGCGTGGCCGCCGGCGACAGCATC------------AGGGCGCGGCCCGCA----CTTCCGTAGAGC-CCGCAATCCGAGCGGGGCGGG---GCC---GCGCGGCGGGAG-------------CCCCGGGCCAGGCCC---CGCGCCGGACC-------------------CCGCCCGCGAGGCCGAGGAAGGGGGTCCC---CTGGTAGCAGGCGCG-------CA--GGCCCGGGGGGCCGC-------------GGCCC----CTCCGGCAG-GACCTGCGCTGCCGCCCTGGCCCGCCCCGCCCGCCCGCCCGGGTGACCGCGCCCCGCCCGCGAGCGCCGCAGTCGC----CCGCGACGCCGCACAAAGCCAACCCACTCCCCTCCCGCACTGCACCGCGCTG-----------CGCCACGCGCCCACTCACCGGAGGCTCGACCG----- s rn3.chr10 109984793 931 + 110733352 ---CCTCCAC----------------------AACAAACTGAACCGGCAGACACAACG-CTAAATC----CCTGGGGTCCTGCTGCTGTCCCTAGCTGCCCAGGCTCTCATCTTACTGGGTTGGGTCACGGAGGTAAGT---TCTCCTACAGGGGGATGCTCTG--TACCTTAGCCACGTGCAGGACAAGGGTCTGTTTGTT----CCTT--CCTGCCAATGGAATACTGTACTAAGCTAAACTATGTGATGATC------GCTTAAATCC--CAAGAGC-------------CCA-------AAGGAGATCCTAAATATGCA--GGTCTGTTCCCC-CTAGTGAGGGTCTGAG-TATGCAACTTGGGAGCAGGTACACCGCTTGCAGATAAAT-CTCAGGAACCTGTTTC--------TGGGCCTTGACCCTAAACCGTCAGTGGCGGTGGAGAACCAACCCGGACGGG-------AAGCGCCTAGATGCCGTTCAGTTCCGCAGATCCCCAAATGTCTTTCAGAAACCCACTGTAATGCCTGCAGGCGACGC------------------------------------------------------GCAGCGGTCAGGGGGACAGC----------------------------------------------CCGGCCGTTGTCCCTCTGAGAGGTGTCGGGCAAAGAAACACATAAAGCAGCGGTCCGATACCG---------------AGAGGCTGCAGACGACCCCGCCCGACGCCGCCAAGCGTGGCCGCCGGCGAAAGCATC------------AGGGCGCGGCCCGCA----CTTCCGTAGGGC-CCGCAATCCGAGCGGGGCGGG---GCC---GCGCGGCGGGAG-------------CTCCGGGCAAGGCCC---CGCGCCGGACCCCGCC-------------------CGCGAGGCCGAGGGAGGGGGTCTCA--CTGGCACCGGGCGCG-------CA--GGCCCTGGCAGCGGC-------------GGCCC----CTCAGGCAG-GACCTATGCTGCCTCCCGGGCCCGCCCCGCCCGCCTCCAT----GACCGCGCCCCGCCCGCGAGCGCCGCAGTCGC----CCGCGTCGCCGCACAAAGCCAACCCACTCCCCTCACGCGCCGCGCCGCACCGTGCCG------CGCCACGCGCCCACTCACCGGAGGCTCGACCA----- s canFam1.chr18 30370975 964 + 66173745 ----------------------------CACTCCCAGCCCCGACAGGGAGGGGTCACCTCTGAAGT----CCTGAGATTCTTCTGC-------AGCTGCCCAGACTCTCTCCCCAAGCGACACCTCCTCCTGGGTC--T---CCCTGACCAAACACACTCCCTG--------GGCCCGGTTCTA---ACAGGGAAGCAAGTC----------------------------CCCACAGCGCAGCTC--TGGTGACCCGGCCAGCCCGAGTCC--CACAGGTGGGTCCCGGCCCCTCA-------CCAGGAGCCCTAAGTACCCGCCAACCTCTTCTCCAACGGCCAGGGTACGTGAGCCACGATTTGGGAAGCGCGGCAGTGCCCACA---TGGT-CTCAAGATCCTCCTCC--------GGGATCCTGGCCCCG-------GGCGGC--------------TCGGACAGC-GTGCCCCGGGACACGGAAGCCC-------GCTCGGGTC---------CTCCGGGCGGC----------------GCGGGAGGT---GGGCCGGGGCCCTGGCCCCCTAGACCTCGGCCTGCCCGTCCCCACGGACCGGCGGGCCGCCTGGGGTCGCCTGGGGCGGCCCGAGCCCCACAAAGGGCCGCCGCCGGCGGGGTGGGGCCAGCCGCTGTTCC------------------------------AGGCCTCCCGGCCGCTTCCTCTGGAATTCCTCTAGAAGGCTCACG-----CCCTGACGCCAC--CCAAGTGTGGCCGCGGGGGACAGGATCCTCCGAGAGCGATGGCCGCGGCCCACACTTCCTTCCGCAGCGCTCCGCAATCTgggc-gggcgggcgcgcc---gcgcggggAGGG---------------------------G---TGCTCGGGACCACGCCGCCGTGAGGGCGCCGCGCCCGCCATCCCCGGGGAGGGGGCGCCGGCCAGTCTGCCGGCGAG-------CAgcggcgcggacgggggc-------------gccgcgggacacgggcggtggcccccgaggaggcccgcgcccaccccg---------------gcgagcggcgcgAACAAAggcgcggcacccccggccccgcggcgcc------cgccctcccggtcccgccccACCCCGCATCGTCCTGTGCGGCGTAGTCGC--TGCCGCCGTTCACTGGAGGATCGACCGTGCCG a score=1572.0 s hg17.chr17_random 1927284 5 + 2618010 CCCCC s panTro1.chr19 81181863 5 + 82489036 CCCCC s rn3.chr10 109984793 5 + 110733352 CCTCC s canFam1.chr18 30370975 5 + 66173745 CACTC a score=1815.0 s hg17.chr17_random 1927289 20 + 2618010 TGTATGTGTGGGGCGGGGCT s panTro1.chr19 81181868 20 + 82489036 TGTATGCGTGGGGCGGGGCT a score=300.0 s hg17.chr17_random 1928223 1 + 2618010 C s mm5.chr11 120252664 1 + 121648857 C s rn3.chr10 109985724 1 + 110733352 C a score=122150.0 s hg17.chr17_random 1928959 1455 + 2618010 TGCACGCCCCGCGGAAAGCNGNTGCTGGGCGAGGGCGCAGCGGAGGTGTTTTTCTCCAGGCTGAGACAGAANNNNNNNNNNNNNNGNGNNGNNNNNNGGNGCAGGCGCCGNTGCAGAGGCCCTAGTGTCCNTGAGGAATCCCGCGGCTCCTCAGGACCAGGAGGCAGGGAGCTCCTGGCACCGTGAGCAGATGAGGGGCTGCCTCAGCCTGGGCTTCACCGCAGA-GCCNTGTTCCCCACTCCGCTTGTTCNGAGATTCCACACATTCGCCCACAAGGGCCGTGTTGAAGTATCAGGAACGGCCGCATAACGTGAGTGGCCTGGCCCAGCAGCAGTGCTNGCACCCAGCCCCGGGCTCGCCTNTCCTGGAGGCCAAGCCCNTAAATGCCNTGCACCAGACACTGGGTGGGACGCTGCCCCGCGTCCAGCCTGCAGCACTTGTTAGGACTGTGGACTCGTTAACGTGGACGCCtcttttatttatnganttgattatttttttgagacgtagtctcagtgtcgncccaggcttgagtacnatggcacaatctcggntcactgcaacctccacctttcaggttcaagcgattctcctgcctcagcctcccgagtagttaggattacaagtgtgagccaacatgcccagctaatttttgtatttttagtagcgacagggtttcaccatgntggccaangctggtctcgaattcctgacctcaggtgatccacccncctcagcctcccaaagcgctgggattacaggcatgaaccaccgGGGTGCCCAAtcttttttttttttttttttttt---cttcaagacagggntcttgcntcttttgcccaggnctggagtgcagtggtacaatctcagcttactgctgcctctatctcctgggctcaagcagtccttccacctcagcctcccgagtagctgggacntacaggtgtgcaacaccatgtccagctaattttttattttttgtacagacagggtctcactatgttgctcaggctggtcttgaacccctgagctcaagcgatcctcctgcctcagcctcccaaagtgctaggattacaggtgtgagccaccatgtccggccACCCAGCCTCTTTTAATCACTCTTGAGCTCCATGCAGACAGGGCCCTGTCTGTTTGGCCCATACTGCCAGGCAACCCAGGCTGATCAAGAGAAGTGGAGACCACACGCACACACACACGCACAGCTGCTTTGTTCAGACACAGACATGAACACAGGAGGGCATTTTTGGGGACAGAACTATGCAAAATACCGAGCTTGGTGTCTTTTGAAAATTTCTGAATGTTGGAGGGATATTTGAGAGTTTCTGTAACTGAGTCACACTGTCAGTGCCATGTCATCAGCACANGCGTTTCCTAATCAGGTGTGAAATGCTTCANCTGTTAAAGACTCAGAGCCCCTGTGCAGGTGATCATGTTGCC s panTro1.chr19 81183537 1450 + 82489036 TGCACGCCCCGCGGAAAGCTCGTGTGGGGCGAGGACGCAGCGGAGGTTTTTTTCTCCAGGCTGAGACAGAATTCGTGCGCCGCACGCGTGGCTGCCTGGCGCAGGCACCGCTGCAGGGACCCTTGTGTCCCTGAGGAATCCCGCGGCTCCTCAGGACCAGGAGGCAGGGAGCTCCTGGCACCGTGAGCAGATGAGGGGCTGCCTCAGCCTGGGCTTCACCGCAGACGCCCTGTTCCCCACTCCACTTGTTCCGAGATTTCACACATTCGCCCATAAGGGCCGTGTTGAAGTATCAGGAACGGCCGCATAACGTGAGTGGCCTGGCCCAGCAGCAGTGTTCGCACTCAGCCCTGGGCTCGCCTCTCCTGGAGGCCGAGCCCCTAAATGCCCTGCACCAGACACTGGGTGGGACGCTGCCCCTCGTCCAGCCTGCAGCACTTGTTAGGACTGTGGACTCGTTAACGTGGACGCCTCTTTTATTTATTGA-TTGATTAtttttttgagacgtagtctcagtgtcg-cccaggcttgagtacaatggcacaatctcggctcactgcaacctccacctttcaggttcaagcgattctcctgcctcagcctccagagtagttaggattacaagtgtgagccaacatgcccagctaatttttgtatttttagtagcgacagggtttcaccatgttggccaa-gctggtctcgaattcctgacctcaggtgatccacccagctcagcctcccaaagcgctgggattacaggcatgagccaccgGGGTGCCCAATCttttttttttttttttttttttttcttcaaggcaggg-tcttgc-tcttttgcccagg-ctggagtgcagtggtacaatctcagcttactgctgcctcgatctcctgggctcaagcagtccttccacctcagcctcccgagtagctgggac-tacaggtgtgcaacaccatgtccagctaattttttattttttgtacagacagggtctcactatgttgcccaggctggtcttgaacccctgagctcaagcgatcctcctgcctcagcctcccaaagtgctaggattacaggtgtgagccaccatgtccggccACCCAGCCTCTTTTAATCACTCTTGAGCTCCATGCAGACAGGGCCCTGTCTGTTTGGCCCATACTGCCAGGCAACCCAGGCTGATCAAGAGAAGTGGAGACCACACGCACACACACACGCACAGCTGCTTTGTTCAGACACAGACATGAACACAGGAGGGCATTTTTGGGGACAGAACTATGCAAAATACCGAGCTTGGTGTCTTTTGAAAATTTCTGAATGTTGGAGGGATATTTGTGAGTTTCTGTAACTGAGTCACACTGTCAGTGCCATGTCATCAGCACA-GCGTTTCCTAATCAGGTGTGAAATGCTTCA-CTGGTAAAGACTCAGAGCCCCTGTGCAGGTGATCATGTTGCC a score=6604.0 s hg17.chr17_random 1930414 36 + 2618010 CAACTTTCCAATAACCCAAGTGCTTTT-AAAAAAAAA s panTro1.chr19 81184987 37 + 82489036 CAACTTTCCAATAACCCAAGTGCTTTTAAAAAAAAAA s canFam1.chr18 30372659 36 + 66173745 CGGCTTGCAGATCACCCAAGTGCTTTT-GAAAAACAA a score=23325.0 s hg17.chr17_random 1930450 272 + 2618010 CTGTTGggccgggcgcnggtggctcacgcctgtaatcccnagcactttgggaggccgaggcgggcggatcacgaagtcaggagatcgagattgtcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggttgcaggtgcgtgtagtccc--agctactcgggagggtgaggcanggagaatggcgtgaacccgggaggcggaacttgcagtgagtggagatctcgccactgcactccagccggggcgac s panTro1.chr19 81185024 271 + 82489036 CTGTTGggccaggcgc-ggtggctcacgcctgtaatccc-agcactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagattgtcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccaggcgtggttgcaggtgcctgtagtcccagagctactcgggagggtgaggca-ggagaatggcgtgaacccaggaggcggagcttgcagtgagtggagatctcgccactgcactccagccggggcgac a score=1146.0 s hg17.chr17_random 1930738 84 + 2618010 Aaaataaataaataaatacataaata-aaAGattcgattgtgtgggtatacattttgtttgtaa-ccattccagttggcaaatatt s canFam1.chr18 30372696 76 + 66173745 ACAAAAAGTAAAAAAAAACAGCTGTAGGAAAATTCAA----------ACACATTTTATACGTGATCTATTACAGTGTAAAAACGTT a score=2107.0 s hg17.chr17_random 1933133 47 + 2618010 GACATATATGTCTTTNNCAATGCTACGTCCTAAAATGATGGCATCAC s canFam1.chr18 30378385 47 + 66173745 GAAAAATATATCTTTGACTACTTAATGTTCTAAAATGATGGCATCAg a score=211.0 s hg17.chr17_random 1933181 9 + 2618010 TTAACTGGC- s canFam1.chr18 30378651 10 + 66173745 TTAACTTGCT a score=5378.0 s hg17.chr17_random 1933190 20 + 2618010 TTTCTTGCATTACTAAAAGG s panTro1.chr19 81189163 20 + 82489036 TTTCTTGCATTACTAAGAGG s canFam1.chr18 30378661 20 + 66173745 TTTCTTGCATTACTAAAAGG a score=67700.0 s hg17.chr17_random 1933210 765 + 2618010 ATGAACTT---TTAAAATAATTTTGTTATTTAAAAACCttgtttatttttatttgttgagatggagtcctgctctgttcccgaggctggagtgcagtggtgcgatcttggctcaccacaacctccacctcccaggttgaagcaattttcctgcctcagcctcccgagtagctgggactacaggcacgcaccaccatgcccagctagtttttgtatttttagtagaggcggggtttcaccatgttggccaggctggtcttgaactcccgacgtcgtaatcctcctgcctcagcctaccaaagtgctgggattacagatgtgagccaccgtacccggccAGAAACAACT--Gttttttaatttttcttttgagacggagtctggctctgttgcccagactggagtgcaatagtgcgatctcggctcaccgcaacctccgcctcccaggttcaagcgattctctcctgcctgagcctcctgaggagcttgggactacaggcacacgccaccacgcccagctaatttttgtattcttagtagagacggggtttcaccatttaggccaggatggttttgatctcttgaccttgtgatc-----gcctcagcctcccaaagtgctgggattacaggcgtgagcccctacacccggccGAAACAACtttttaagatagaatctatgttgttcaggctggattcaagttcctgggctcaagtgatcctcctacctcagcctcccaagcagctgggactataggcatgtaccacttcgtccagc s panTro1.chr19 81189183 767 + 82489036 ATGAACTTCCTTT----TAGTTTTGTAATTGAAAAACCTTGtttatttttatttgttgagatggagtcctgctctgttccccaggctggagtgcagtggtgcgatcttggctcaccacaacctccacctcccaggttgaagcaattttcctgcctcagcctcccaagtagctgggactacaggcacgcaccaccatgcccagctagtttttgtatttttagtagaggcagggtttcaccatgttggccaggctggtcttgaactcccgacgtcgtaatccgcctgcctcagcctaccgaagtgctgggattacagatgtgagccaccgtacccagccAGAAACAACTTGGtttttta-tttttcttttgagacggagtctggctctgttgcccagactggagtgcaatagtgcgatctcggctcaccgcaacctccgcctcccgggttcaagcgattctctcctgcctgagcctcctgaggagcttgggactacaggcacacgccaccacgcccagctaatttttgtattcttagtagagacggggtttcaccatttaggccaggacggttttgatctcttgaccttgtgatccccccgcctcagcctcccaaagtgctgggattacaggcgtgagcccctacacccggccGAAACAACtttttaagatagaatctatgttgttcaggctggattcaagttcctgggctcaagtgatcctcctacctcagcctcccaagcagctggga---taggcatgtaccacttcgtccagc a score=12741.0 s hg17.chr17_random 1933975 94 + 2618010 TTCNCGGCTTTTTCCATGGTT------------GTAAACTGCCTATTCATGTTCTTGGTGGTAAATGTTTCCCAAGGTT--GTTTGTCTTGAATTTGTGAGATTGTCT s panTro1.chr19 81189950 93 + 82489036 TTC-CGGCTTTTTCCATGGTT------------GTAAACTGCCTATTCATGTTCTTGGTGGTAAATGTTTCCCAAGGTT--GTTTGTCTTGAATTTGTGAGATTGTCT s canFam1.chr18 30379488 102 + 66173745 ttctcttcttttttctttctttcttcttttttaatgaacttcctgttcacatccttgtc------tgtttcccaatgtttggtttgtcttaaattattggtatttttt a score=54847.0 s hg17.chr17_random 1934069 629 + 2618010 GATTTGCAGAAGtttttgtttgagagtcttgctctgtcacccaggcagtacagtggcacgatcttggctcagtgcatcctccacctntggagctcaagggatcctcccacctcatcctcccgagtagttgggaccacaggtggcaccatcatgcccagttaatttttttcttttt----ATGTTACAGCAATGAGTCTGGGTACTTTTTGCATTTTTTAAATGTTTTTTGTAGAGATGGGTTTTGCCATGTTGCCCAGGTTGGTGACTTACAGAAGNTTTtttttttttntnttt-----ttttttttttttttngagacggagtctcgctgtcgcccaggctggagggcagtggccggatctcagctcactgcaagctctgcctcctcggtttacaccattctcctgcctcagcctcccgagtagctgggactacaggtacccaccaccacacctagctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggatgatctcgatctcctgaccttatgatctgcccgcctcggcctcccaaangtgccgggattactggcatgagccaccgcgccncggccTACAG---TTTTAAAAAGTCCTTACTGTCCTGCAAAGATAGGGAC s panTro1.chr19 81190043 639 + 82489036 GATTTACAGAAGtttttgtttgagagtcttgctctgtcacccaggcagtacagtggcacaatcttggctcagtgcatcctccacctctggagctcaagggatcctcccacctcatcctcccgagtagttgggaccacaggtggcaccatcatgcccagttaatttttttctttttCTTTATGTTACAGCAATGAGTCTGGGTACTTTTTGCATTTTTAAAATTttttttgtagagatgggttttgccatgttgcccaggttggtGACTTACAGAAAGTTTCTTTTttttccttttctttttttttttttttttttgagacggagtctcgctgtcgcccaggctggagggcagtggccggatctcagctcactgcaagctctgcctcctcggtttacaccattctcctgcctcagcctcccgagcagctgggactacaggtacccaccaccacacccagctaattttttgtatttttagtagagacggggtttcaccatgttagccaggatgatctcgatctcctgaccttgtgatctgcccgcctcggcctcccaaa-gtgccgggattactggcatgagccaccgcgcc-cggccTACAGAAGTTTTAAAAAGTCCTTACTGTCCTGCAAAGATAGGGAC a score=21002.0 s hg17.chr17_random 1934698 149 + 2618010 TCTTTT--ACCTAACAATACCATGAACACACCCACCAAAACTGACAATGCTTTCTGA----CATCTAATAGTCTCTGCTCAATTTTC---CCCAAGTCTCTTCTTGCAATT-GTGTCCCCACATCAGAATCTGGACAGAGGCCGTGCTGTGCACTGGGA s panTro1.chr19 81190682 151 + 82489036 TCTTTTTTACCTAACAATACCATGAACACACCCACCAAAACTGACAATGCTTTCTGA----CATCTAATAGTCTCTGCTCAATTTTC---CCCAAGTCTCTTCTTGCAATT-GTGTCCCCACATCAGGATCTGGACAGAGGCCGCGCTGTGCCCTGGGA s canFam1.chr18 30379759 157 + 66173745 TCATTA--ACAAAacactaccattaacatacctaccaaagtcaacagtactttcttaggatcatcaaatatgaaatatttattttttgtgtccaaaactgttgttcaagctggtgtatctacatcaagatccagatggagtcaacactacgcacttggA a score=873.0 s hg17.chr17_random 1934847 9 + 2618010 TGCCCACTG s panTro1.chr19 81190833 9 + 82489036 TGCCCACTG a score=50879.0 s hg17.chr17_random 1934856 370 + 2618010 CCTCTATTTCCTCTTCTGCGCTTGGTGCCACCCAGGCGTCCAGGA------GCCAGTGTGTTTTGCTGACAATGTCCTGTG-----TTCTGGATTTGCTGGGCTGAACCCTC---CAGGTGTCCTGTGAACCCTCTCCCATCCTCTGCACT----TCTTAGGCAGGATGAGCCCAGTTCGAGTTTTAGAGGCGGTGCTGGGGGCCTCCTGCTGCTTCACGTCATTGGACTTGTCTTCTGGTCCTACCTGTAGTGAGGTATGGTTGGTTCTGGGAAGCTGGGCTGGTCCACCCATTATCAGTGGCCTCCTCAA-CTGTCATCTTCAATTTTC--------------ACTGTTTCTCACATGCATCATTTTATTGGACACTTCAAAGTGGTGATTTTCTAATTTT s panTro1.chr19 81190842 373 + 82489036 CCTCTATTTCCTCTTCTGCGCTTGGTGCCACCCAGGCGTCCAGGA------GCCAGTGTGTTTTGCTGACAATGTCCTGTG-----TTCTGGATTTGCTGGGCTGAACCCTAACGCAGGTGTCCTGTGAACCCTCTCCCATCCTCTGCACT----TCTTAGGCAGGATAAGCCCAGTTCGAGTTTCAGAGGCGGTGCTGGGGGCCTCCTGCTGCTTCACGTCATTGGACTTGTCTTCTGGTCCTACCTGTAGTGAGGTATGGTTGGTTCTGGGAAGCTGGGCTGGTCCACCCATTATCAGTGGCCTCCTCAA-CTGTCATCTTCAATTTTC--------------ACTGTTTCTCACATGCATCATTTTATTGGACACTTCAAAGTGGCGATTTTCTAATTTT s canFam1.chr18 30381112 368 + 66173745 CTTCCGTCTCCTTTTCTGTCCTT-GTGGTGCTTAGGTGTGCAGGAAACCAGGACACTGGG----GTTGAGAATTTCGCGTGGGTGCTTCTGGATCTGCCTGATGGGATCCTC---CAGGTGAGCTGTGG---CATGCTCATCTGCTCCTCTGGGGTCTCAGGCTGGGTGAGCCCCA-TCGGGTTT----------------------CCACTGCTTCACCTCAGGGGACAC-TCTGTTTGTCCCACCTGTGGTGAGGTGCACTAGGCTCTGGGACGTCAGGCTGGTCCACCTGTCATCAACTGCCACATCGACCTTTCATCCGACGGTTTCAGCAGCCTCTCGGGATTGTTCTCAGCCTGTATTGTTTCATTAGGCATGTGCAAATGGCCATTTTCTAATACT a score=24046.0 s hg17.chr17_random 1935226 299 + 2618010 GGG-----TGTGttttttttttttttttttgagagagtcttgctcttttgcccaggctggagtgcagtggcgcactctcggctcactgcaaccntccaccntcctngagttcaagtgattctcatgcctcggcctcccaaangtgctggagttacaggcatgagccaccgtgcctggcctgattttctaattatttctgtatttcttagctggaattatttc-------ttttttttttaaaggacccncgtcatcaattgttgccccaaaattatagagttcatacagaaaagacaaattaaatgcccga s panTro1.chr19 81191215 306 + 82489036 GGGGttttttttttttttttttttttttttgagagagtcttgctcttttgcccaggctggagtgcagtggcgcactctcggctcactgcaacc-tccacc-tcct-gagttcaagtgattctcatgcctcggcctcccaaa-gtgctggagttacaggcgtgagccaccgtgcctggcctgattttctaattatttctgtatttcttagctggaattatttctttttttttttttttttaaaggaccc-cgtcatcaattgttgccccaaaattatagagttcatacagaaaagacaaattaaatgcccga a score=14150.0 s hg17.chr17_random 1935525 80 + 2618010 ttctttccttttatttgccaattttt---atgagtcagtgccttacaacttccaaaggtaaacatgaggcttctttcc-------ttaag s panTro1.chr19 81191521 80 + 82489036 ttctttccttttatttgccaattttt---atgagtcagtgccttacaacttccaaaggtaaacatgaggcttctttCC-------TTAAG s canFam1.chr18 30382196 90 + 66173745 TTTTTTCCTTTTATTTGCCAATTTTTAGAATGAATTAGCACCCAAGGGTCTCCAATGATGAACATTAATTTTTTTTCTTTCGTAATTAAg a score=18926.0 s hg17.chr17_random 1935605 125 + 2618010 catcatcatgaactcttagatgttcatttattCAACACAAAC----TAAAAAAGGAATGTTAAGTCTTAAGATATCATTAATACTAACTTGCATTACTTGTTTATGAAGGATTAATATACTAAATAGAA s panTro1.chr19 81191601 125 + 82489036 CATCATCATGAACTCTTAGATGTTGATTTATTCAACACAAAC----TAAAAAAGGAATGTTAAGTCTTAAGATATCATTAATACTAACTTGCACTACTTGTTTATGAAGGATTTATATACTAAATAGAA s canFam1.chr18 30382508 125 + 66173745 TATCATTATGAACACCTGGATGTTTATATATATGATAAGAACAATAAAAAAAAGAAATGTTACATC-TACAAAATCATTAATGGTAATTCGAATGGC---TTTAGGATGGATTTGTACACTAAGAAAAT a score=12234.0 s hg17.chr17_random 1935730 65 + 2618010 TATATGCTCACATTTTTATATGTAGATATTAATTTACAAGTA--ATTAACATGCTAAAACATTTTAT s panTro1.chr19 81191726 65 + 82489036 TATATGCTCACATTTTTATATGTAGATATTAATTTACAAGTA--ATTAACATGCTAAAACATTTTAT s mm5.chr4 78928662 63 - 154141344 TATATATTCAATTGCTTATATGTAGATATTTACATACTGATAATATTAACA----AGAACTTTTGAT s canFam1.chr18 30382633 38 + 66173745 GGCATGCTCCCAT---------------------------TA--ATTAACATGCTGAAACATTTTAT a score=15153.0 s hg17.chr17_random 1935795 85 + 2618010 AATTCGCTTCAATAACGTGTATAGATAACNACAAAAATTAACTCTGGCCTACCTTAGGCTACATGATCACAGACAAGCTGATGTA s panTro1.chr19 81191791 84 + 82489036 AATTCGCTTCAATAACGTGTATAGATAAC-ACAAAAATTAACTCTGGCCTACCTTAGGCTACATGATCACAGACAAGCTGATGTA s canFam1.chr18 30382671 83 + 66173745 AGTTTCTTTTTACAACTTGCATAGATTAC-A-AACAATTGGCTCTGGCCTAGTTTAGGGTAAATGATCACAGACAAGGTGATATG a score=7803.0 s hg17.chr17_random 1935880 41 + 2618010 ATTAAAATGAGAAGATTTATTTCTTGGTAC-TTTCATGGCTT s panTro1.chr19 81191875 41 + 82489036 ATTAAAATGAGAAGATTTATTTCTTGGTAC-TTTCATGGCTT s mm5.chr11 120257720 39 + 121648857 ATAAAAAT---AAGATTTATCACCAAATGCAGCTGATAGCTT s canFam1.chr18 30382754 41 + 66173745 TTTTAAATTAATGAGCTCATCTCCTGGTAC-CCTGATGGTTT a score=9867.0 s hg17.chr17_random 1935921 16 + 2618010 TATTTTTACATTAAAG s panTro1.chr19 81191916 16 + 82489036 TATTTTTACATTAAAG s mm5.chr11 120257759 16 + 121648857 TATTTTTACATTAAAA s rn3.chr10 109991821 12 + 110733352 TATTTTTA----AAAA s canFam1.chr18 30382795 16 + 66173745 TATTTTTGCATTAAAA a score=3628.0 s hg17.chr17_random 1935937 5 + 2618010 TCTTT s panTro1.chr19 81191932 5 + 82489036 TCTTT s mm5.chr11 120258280 5 + 121648857 TCTTT s rn3.chr10 109991833 5 + 110733352 TCTTT s canFam1.chr18 30382811 5 + 66173745 TTTCT a score=36378.0 s hg17.chr17_random 1935942 129 + 2618010 TATGATGTATTATTTATTGCTATCTTCCACCAAATGCTTGGCCAGTCAATCCCAGGG-TGATCTTAATAATAA---CAACTAATACATGTAAACCATAAACATTTATGAAAATTATATATCCTCATATAAATT s panTro1.chr19 81191937 126 + 82489036 TATGATGTATTATTTATTGCTATCTTCCACCAAATGCTTGGCCAGTCAATCCCAGGG-TGATCTTAATAAT------AACTAATACATGTAAACCATAAACATTTATGAAAATTATATATCCTCATATAAATT s mm5.chr11 120258285 127 + 121648857 AATGATATATTAT---TTGCTATTTTCCAACAAATGGCTGGCTAGTTGGCACCAGAG-ATTCAATAACAGTAAATGTAAATAAATCATATAAATTACAA--ATTTATAAAAATGATATGACCTCACATAATTT s rn3.chr10 109991838 128 + 110733352 AATGATATATTAT---TTGCTGTTTTCCAACAAAGAGCTGGCTAGTTGGCACCAGAGATTAGATTAACAGTAAATCTAAGTAAATCATGTAAATTACAA--ATTTATAAAGATAGTATGACCTCACATAAGTT a score=-114.0 s hg17.chr17_random 1936071 8 + 2618010 TC---ATAACA s panTro1.chr19 81192063 11 + 82489036 TCATAATAACA s rn3.chr10 109991966 8 + 110733352 ---TTTGAACA a score=9731.0 s hg17.chr17_random 1936079 134 + 2618010 TATGTAAGTTACaaaagaaagaaaaagtcaacgaggatatgggggaagccaaaaggaatacaaactaacaaatgaacctaactatgtacaaattatgcaa--atcacataatttgcaggag--gtggaaagaaagaaa s panTro1.chr19 81192074 137 + 82489036 TATGTAAGTTACaaaagaaagaaaaagtcaacgaggatatgggggaagccaaaagaaagacagactaacaaatgcacctcactatgtac-aattatgaaagtatcacataatttgtaggaggaggggaaagaaagaaA a score=616.0 s hg17.chr17_random 1938641 22 + 2618010 TCATAGCACTTTTGAGACAAGt s canFam1.chr18 30384993 22 + 66173745 TCTTACCATGTTCGAGAGAGGA a score=1706.0 s hg17.chr17_random 1938958 98 + 2618010 TGAGACAAGTTTTTCTACAAAATGTAATGACATTAAGGTAATATGAAGAGACATGATCCTCATCTTTATGTAACTGGAGTTCAGGTATTCATTACGCT s canFam1.chr18 30385015 96 + 66173745 TTCCAGAAGATTTTC-ACAAAACAGGGCAACCCGAAGAAGAGA-GGTCAGGTGTGATCCTTATCTTTGTGAAACTGCAGTAAGGACACTCCTCCCACT a score=5918.0 s hg17.chr17_random 1939056 49 + 2618010 CAACAATATCAACCTTTTATGATG-CTATTTTGTTGAATGTGATGAATGC s panTro1.chr19 81195381 50 + 82489036 CAACAATATCACCCTTTTGTGAGGGCTATTTTGTGGAATGGGATAAATGC s canFam1.chr18 30385111 49 + 66173745 CGACAAGGTCAACCTTGTAGGAGT-CCACTATGCTGAGCAGGAGGCATGC a score=88597.0 s hg17.chr17_random 1939105 1002 + 2618010 CACTGATAATAGGACATTTAATTCCATTTAGAATAT-CTGTATTTCCAAGTAAAGTCCTAAATCTGCCAGGGTGGAGATTTATCCATGGTAAAGTCTATTCAATCCAGATATAAAAAAGATAGAGATTGAGggccaggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcggatcacaaggtcaggagatcaagaccagcnctggccaacatggtgagaccctgtctctactaaaaatacaaaaattagctgggcatggcggcacgtgcctgtaatcccagccacttgggaggctgaagcagaagaattgcttgaacggggacccgggaggcagaggctgttgtgagctgagattgcaccactgcantccagcctgggctacagagcgagantctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaagagagattaaagacatttaaaaaaaagattacaaagaagaaactgcaaagcaaaatcacaatgagatattacttcacacccagtaggatgactaaactaaaaaaggtaagtgttggtgagaatgtggagaaattggaaccctcatacattgctggtagaaatataaaatgctgcagctgctttggaaangtctggcagttcctcaaaaaattaaacagttacctcatgacccggcaattctactcgagaattgaaaagatgttaatataaaatgtatacaaaaatgttcacagcagcattattcttataaagccacggnagtggagacaacccaaatgtccatgaacagatggac-aaaaaaaaaatatgcggtatatccatgtcagtagtcggccataaaaaggaacagtcttagacatggtacagcacagatgcaccttaaaaaTGCTGGCTGGggacaggcgcagtggctcacacctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagatagagaccatcctggctaacaaggtgg s panTro1.chr19 81195431 992 + 82489036 CCCGGATAATAGGGCATTTAATTCCATTTAGAATATTCTGTATTTCCAAGTAAAGTCCTAAATCTGCCAGGGTGGAGATTTATCCATGGTAAAGTCTATTCAATCCAGATATAAAAAAGATAGAGATTGAGggccaggcgcggtggctcacacctgtaatcccagcactttgggaggccgaggtgggcggatcacaaggtcaggagatcaagaccagct-tggc---catggtgagaccctgtctctactaaaaatacaaaaattagctgggcatggcggcacgtgcctgtaatcccagtcacttgggaggctgaggcaggagaattgcttgaacggggacccgggaggcagaggctgttgtgagctgagattgcaccactgcactccagcctgggctacagagcgagactctgtctc-------aaaaaaaaaaaaaaaaaaGAGAGAGATTAAAGACATTTAAGAAAAAGATTACAAAGaagaaactgcaaagcaaaatcacaacaagatattacttcacacccagtaggatgactaaactaaaaaaggtaagtgttggtgagaatgtggagaaactggaaccctcatacattgctggtagaaatataaaatgctgcagctgctttggaaaagtctggcagttcctcaaaaaattaaacagttacctcatgacccggcaattctactcgagaattgaaaagatgttaatataaaatgtacacaaaaatgttcacagcagcattattcttataaagccacgg-agtggagacaacccaaatgtccatgaacagatggacaaaaaaaaaaatatgcggtatatccatgtcagtagtcggccataaaaaggaacagtcttagacatggtacaacacagatgcaccttaaaaaTGCTGGCTGGggacaggcgcagtggctcacacctgtaatcccagcactttgggaggctgaggcgggcagatcacgaggtcaggagatagagaccatcctggctaacaaggtgG a score=99298.0 s hg17.chr17_random 1940630 1098 + 2618010 agaccctgtctcttgaaaaaagaaaCCCggtcgggcgcggtggctcacgcctgtattcccagcactttgggaggccgaggggggcggatcacgaggtcaggagatcgagaccatcctggtgaccacggtgaaaccccgtctctactaaaaatacaaaaaattaagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgnggaggcggagcttgcagtgagtggagattgcgccactgcactccagcctgtgtgacagaggaagactccgtctcaaaaaaacaaaaacaaaaaaaaCCATAggctgggcgcagtggctcatgcctgtaatcccagcactttgggaggcccagctgggcggatcatgaggtcaggagatcgagaccatcctggctaaccncggtgaaaccnccatctctactaaaaatacgaaaaactagctgggcatggtggcgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatcgattcaacccgggaggcggaggttgcagtgaggtgaaatcatgccaccacacacgtctgggaaacaggaacgaaactccatctcaaaagaaaaaaacaaaaaacgaaaaaacaaCCTCTAAAATGAAAGACTGTATCCCTAGATTGCTGAGAGGTAAATGAAATGTATGTAGAACATCCAGCAGNAGGTGCAGCCTCAGACACTGGCTGACCATTTGTGCAACCTGAGAGAGGCGTGCTCTTGCAGCTTGAGTTCCAACCATGCCCCACACTCCACTCCCNATTAGGCTACACTGCAACCTATCACTTGTATGTTTCCTATATTAGACCATCAGTTCACTGCATGTTAAGAACCAAAAGTTACCATTTACATGACAACTCTGNTTGCCAGGTACAGACATAGCCATCTCATGAGATCTAAAAGGATGTCTGAGAGCAACACTGTAGCCCTTTAACCCACGTGAGGCTGAACAGGATTCAATCAGCTGCCCAGTGTAGACTGCTCCTTAGATCTCCGTGCACACCAGCCAGAAACCAGAGCACTGTGGGAGCGTGTGCACGCT s panTro1.chr19 81196945 1091 + 82489036 AGACCCTGTCTCT-GAAAAAAGAAACCCggtcgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggggggcggatcacaaggtcaggaggtcgagaccatcctggtgaccacggtgaaaccccgtctctactaaaaatacaaaaaattaagccgggcgtggtggcgggcacctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctg-ggaggcggagcttgcagtgagtggagattgcgccactgcactccagcctgtgtgacagaggaagactccgtctcaaaaaaacaaaaacaaaaaaaaCCATAggctgggcgcagtggctcacgcctgtaatcccagcactttgggaggcccagctgggcggatcatgaggtcaggagctcgagaccatcctggctaacc-cagtgaaacc-ccatctctactaaaaatacgaaaaactagctgggcatggtggcgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatcgattcaacccgggaggcggaggttgcagtgaggtgaaatcatgccaccacacacgtctgggaaacaggaacgaaactccatctcaaaagaaaaaaacaaaaaacaaaaaaaCAACCTCTAAAATGAAAGACTGTATCCCTAGATTGCTGAGAGGTAAATGAAATGTATGTAGAACATCCAGCAG-AGGTGCAGCCTCAGACACTGGCTGACCATTTGTGCAACCTGAGAGAGGCGTGCTCTTGCAGCTTGAGTTCCAACCATGCCCCACACTCCACTCCC-ATTAGGCTACACTGCAACCTATCACTTGTATGTTTCCTATATTAGACCATCAGTTCACTGCATGTTAAGAACCAAAAGTTACCATTTACATGACAACTCTG-TTGCCAGGTACAGACATAGCCATCTCACGAGATCTAAAAGGATGTCTGAGAGCAACATTGTAGCCCTTTAACCCACCTGAGGCTGAACAGGATTCAATCAGCTGCCCAGTGTAGACTGCTCCTTAGATCTCCATGCACACCAGCCAGAAGCCAGAGCACTGTGGGAGCGTGTGCACACT a score=13825.0 s hg17.chr17_random 1941728 118 + 2618010 CACATCCGAGACCCTCTCCAGGGACCTCAGGCTGAAGACGGAGCTGGGCAGACCATGAGCCACCCTGGAAGAGCT---CCAAGTCCCACAGGAATGCTGCCTCTCCTGCCCGGGGCTGGCC s panTro1.chr19 81198036 118 + 82489036 CACACCCGAGACCCTCTCCAGGGACCTCAGGCTGAAGACGGAGCTGGGCAGACCATGAGCCACCCTGGAAGAGCT---CCAAGTCCCACAGGAATGCTGCCTGTCCTGCCCCGGGCTGGCC s galGal2.chr3_random 653372 112 + 1636275 CACCTCC---ATCCTTTCC-GGGAGCTCTGGCTGGGCACGGAGCTGGG-ATCTCCTCAGGCACA--GAAAGAATCCAGCCAAGTTTTAGATG-ATGAAGCTTCT-CTGAGCAGGGCAGCCC a score=135053.0 s hg17.chr17_random 1941846 1469 + 2618010 AGTTCCTACTCTCAGCCCATGCCGGCCAGGGAAAGGGACCAGGAAGAACAGGGCTTCCCTTTTCTCCCCACCCTGAGTGTAATTTCGCTTGTCGACACTTAAGTCATGTGTCCAACCTGGGCCAATCCCTGTGCtttctttttttgccccgagatggagttgtgctctttttcacccangctggagtgcgatggcgcgatctcggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctccggagtagctgggattacaggtgcatggcaccatgGAACCACAGGACAGCCAGAGGCAGAGGGGGTTCCCCANAGTGCCCATGGGGCACAGGCTGCCAGTTCAGTTTGTCAGCCATAGCTCGCTGTCTGAGCAAAGCATCACTCAGTCACCATGTGGGGGGCAGCAGGGCACTGGGCAGTGTGGAGTGTCCGCCCTGCAAGGCCCTGTGCCCGGAGGACTGGCAGCANCCCTTCNAGAGGGGACCAGACAGCCCAGCTGGCCNAGGCCTCATGTCTACTTGCTGTCTGTGCAGTCAGTGGAAGAGCCCTGCTCTTCTTTCTCTCACAAGCACCCTGCTGGAACAATAAATTAAATAGTCCTCTGGCCTTGGAAGTAAAATAAGGTTTTGTGTTTTATGAATAAGGAAATGAAGATTGGGTATGATGAGGCTCAGCCCAGCTACCTGACCTGCTGCCCACCAGAAGCCCCGNGTGGCTTCCAGACCCAGCCTCTATCCTAGTTATAAATGGCCAGCCCCACCTCCACCACAGGCACAGAATCAGGTCATTCTCCTTTGACCACTCGGCAGCACCTGCCTCAATGACCCCACCACTGGCCCCCCAGCAAATACCAGCTGTTGCTTCTATGACATCATTCTCTCTACTTCCTTTACCTCCAACCCTCCCAAGACCATGCCACATATGGACACGACTTCGACGTGTCCACGTGCTATCAGCTGACAAACTGGAGAGGTCCGGCTCTAGGCAACGCTCTCCTGCGGGCCAGCTGGTGCCTCTGCCCAGCCTGTCCAATGCTGACGCCCCTCAGCTGGCTCCTTCCTGGGGCCTTCTCTCCAGTGACACCTACCCACCCAGTTCCCCAAGGCCTCATATTACTTCATTCCCATGCCCCTCACTCCCGAGAATGCCAGGAAGTCCCAAATCCTGGTCATTCCTCCCTCCAAATGCCTGTTACACCACTACTGCACAACCAAAGCAATGCTGCTTGTCAGTCCTGTCATTTGTCACACCCTGCAGGGGCTGACCACACCAGTCCATCAGGTGCCCTCTCCACTTCCTAAGCAGCAGGGAGCCAGTCCTAGCACGGCCCCAGAGAGCAGACCCCCTGCCTGGCATGGGCCTGCTCAGGCCTTGCTCCAACACCGAGGCCCGGGCCAAGGGCACCTGCTTGGGGATAACCTGACTCTAACTCACTGCACTGGTGACATTTTC s panTro1.chr19 81198154 1462 + 82489036 AGTTCCTACTCTCAGCCCATGCCGGCCAGGGAAAGGGACCGGGAAGAACAGGGCTTCCCTTTTCTCCCCACCCTGCGTGTAATTTCGCTTGGCGACACTTAAGTCATGTGTCCAACCTGGGCCAATCCCTGTGCtttctttttttgccccgagacggaattgtgctctttttcacccaggctggagtgcgatggcgcaatctcggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctccggagtagctgggattacaggtgcatggcaccatgGGACCACAGGACAGCCAGAGGCAGAGGGGGTTCCCCA-AGTGCCCATGGGGCACAGGCTGCCGGTTCAGTTTGTCAGCCATAGCTCGCTGTCTGAGCAAAGCATCACTCAGTCACCATGTGGGGGGCAGCAGGGCACTGGGCAGTGTGGAGTGTCCGCCCTGCAAGGCCCTGTGCCCGGAGGACTGGCAGCA-CCCTTCAAGAGGGGACCAGACAGCCCAGCTGGCCAAGGCCTCATGTCTACTTGCTGTCTGTGCAGTCAGTGGAAGAGCCCCGCTCTTCTTTCTCTCACAAGCACCCTGATGGGACAATAAATTAAATAGTCCTCTGGCCTTGGAAGTAAAATAAGGTTTTGTGTTTTATGAATAAGGAAATGAAGATTGGGTATGATGAGGCTCGGCCCAGCTACCTGACCTGCTGCCCACCAGAAGCCCCG-GTGGCTTCCAGACCCAGCCTCTACCCTAGTTATAAATGGCCAGCCCCACCTCCACCACAGGCACAGAATCAGGTCATTCTCCTTTGACCACTCGGCAGCACCTGCCTCAATGACCCCACCACTGGCCCCCCAGCAAATACCAGCTGTTGCTTCTATGACATCATTCTCTCTACTTCCTTTACCTCCAACCCTCCCAAGACCATGCCACATATGGACACTACTTCGACGTGTCCACGTGCTATCAGCTGACAAACTGGAGAGGTCCGGCTCTAGGCAACGCTCTCCTGCGGGCCAGCTGGTGCCTCTGCCCAGCCTGTCCAATGCTGACGCCCCTCAGCTGGCTCCTTCCTGGGGCCTTCTCTCCAATGACACCTACCCACCCAGTTCCCCAAGGCCTCATAATACTTCATTCCCATGCCCCTCACTCCCGAGAATGCCAGGAAGTCCCAAATCCTGGTCATTCCTCCCTCCAAATGCCTGTTACACCACTACTGCACAACCAAAGCAATGCTGTTTGTCAGTCCTGTCATTTGTCACACCCTGCAGGGGCTGACCACACCAGTCCATCAGGTGCCCTCTCCACTTCCTAAGCAGCAGGGAGCCAGTCCTAGCACAGCCCCAGAGAGCAGACCCCCTGCCTGGTATGGGCCTGCTCAGGCCTTGCTCCAACACCGAGGCCCAGGCCAAGGGCACCTGCTTGGGGATAACCTGACTCT----CACTGCACTGATGACATTTTC a score=12266.0 s hg17.chr17_random 1943315 64 + 2618010 TGTCACATTCACAGCGACTACAGCTGGGGACTTAGTAATCCTTTCTCCTGCTAGACTGGGCTTC s panTro1.chr19 81199616 64 + 82489036 TGTCACATTCACAGCGACTACAGCTGGGGACTTAGTAATCCTTTCTCCTGCTAGACTGGGCTTC s mm5.chr8 68168951 64 - 128688707 TGTCACATTCCCAGTAATAACAGCAGGGACAAGGGTGACCCTTCCTCCGGCTACACTGGGCTCC a score=23345.0 s hg17.chr17_random 1943379 258 + 2618010 TGGAAGGGCCAAGATTAGTCATCCTGTTCATCTGGGTTCCTAGACTGTGGCCCTGGCTGGCATTGGGCAAGCTGCTTAGATGGCAGCTGCTGATCTGTAGTGACATCTGTGACCGACAGCGAAAGAACCACCNCTTAGTCACACTCCCTTGCCCATGACTCAGCCAGGCCCATCCCAGCGTGGAAGCAAGCTTAGCCTGGGATGTGTGCCCGCAGGAGCCGCTGGTGCAGGGAAAGGTTTCTGCAGACACGGCATGCA s panTro1.chr19 81199680 256 + 82489036 TGGAAGGGCCAAGATTAGTCATCCTGTTCATCTGGGTTCCTAGACTGTGGCCCTGGCTGGCATGGGGCAAGCTGCTTAGATGGCAGCTGCTGATCTGTAGTGACATCTGTGACCGACAGCGAAAGAACCACCT-TTAGTCACACTCCCTTGCCCATGACTCAGCCAGGCCCATCCCAGCGTGGAAGCAAGCTTAGCCTGGGATGTGTGCCCGCAGGAGCCGCTGGTGCAGGGAAAGGTTTCTGCAGACA-GGCATGCA a score=10683.0 s hg17.chr17_random 1943637 74 + 2618010 TTCCTGTCTGTCTCTCCNACTACCACTGCCCACTGCCCTGGGCTTCCTTACATCCCAGCTGTGGGACAGTGGGG s panTro1.chr19 81199936 73 + 82489036 TTCCTGTCTGTCTCTCC-ACTACCACTGCCCACTGCCCTGGTCTTCCTTACATCCCAGCTGTGGGACAGTGGGG s mm5.chrUn_random 13140616 74 - 102265694 TCTCTTTCTTTCTCTCCCTCTCTCCCCACACATTTCTTTGGAATTCCTTGCATCTGAGCTATCTGTCAAGAGGG a score=63123.0 s hg17.chr17_random 1943711 698 + 2618010 TCAGGCAGAACTCTGGAGCTCCCTTGTCCCCCTTCCCATCTCATTCTCAAAGTGCTGTCACCAACCCAGCATCAGGGGGCACAaggctctctctccactgcccagcttggagtgcagtggcatgataatggctcacagcagcctcaacctccagggctcaagcgatcctcccacctcagcnctttagaatagctgagaccacaggagcacgccaccacactcagctaacttttgtatttttagtagagatagggttttgccatgttgcctaggctggtctcgaacttctgggctcaagagatccttctgccctgacctcccaaagtgctgggattacaggtatcagGCGTTGCCCTACTCCtttttgagacggagttcactcttgttgtccagactggagtgcaatggcacaatctcggctcactgcaacctccacctccctggttcaggcgattctccagcctcagcctcccaagtagctgggattacaggcatgcaccaccacacccagctaattttgtatttttagtagagacggggtttcgccatgtngnccaggctggtcttgaactcctgacctcaggtgatctgcctgccccagcctcccaaagtgctgggattacaggcgtgagccaccngcgcccNAGCNCGCCCCACTCTTAAATGGACGGATTATCACAGCTTCCACCAGCCACTTC s panTro1.chr19 81200009 694 + 82489036 TCAGACAGAACTCTGGAGCTCCCTTGTCCCCCTTCCCATCTCATTCTCAAAGTGCTGTCACCAACCCAACATCAGGGGGCACAaggctctctctccactctccagcttggagtgcagtggcgtgataatggctcacagcagcctcaacctccagggctcaagcgatcctcccacctcagc-ctttagaatagctgagaccacaggagcacgccaccacactcagctaacttttgtatttttagtagagatagggttttgccatgttgcctaggctggtctcgaacttctgggctcaagagatccttctgccctgacctcccaaagtgctgggattacaggTATCAGGCGTTGCCCTACTCCtttttgagacggagttcactcttgttgtccagactggagtgcaatggcacaatctcggctcactgcaacctccacctccctggttcaggcgattctccagcctcagcctcccaagtagctgggattacaggcatgcaccaccacacccagctaattttgtatttttagtagagacggcgtttcgccatgttggccaggctggtcttgaactcctgacctcaggtgatccgcctgccccagcttcccaaagtgctgggattacaggcgtgagccacc-gcgccc-agc-cGCCCCACTCTTAAATGGACGGATTGTCACAGCTTCCACCAGCCACTTC a score=6832.0 s hg17.chr17_random 1944409 63 + 2618010 ATCAAATATACAACTAAGAGAGGATCCTNCATGCCTTGCTCCGNGGCAAGGTTAAAAACAACA s panTro1.chr19 81200703 62 + 82489036 ATCAAATATACAACTAAGAGAGGATCCT-CATGCCTTGCTCCGTGGCAAGGTTAAAAACAACA s rn3.chr10 109998706 49 + 110733352 ATTGACTACACAAATAAGGAAGCACCTTTTTTTCCTTG--------------TCAATATAACA a score=3409.0 s hg17.chr17_random 1944472 17 + 2618010 --ACAA---AAAAA-CAAACAGA s panTro1.chr19 81200765 20 + 82489036 --ACAACAAAAAAA-CAAACAGA s mm5.chr11 120265281 17 + 121648857 --ACAG---AAAAA-CACAAAGG s rn3.chr10 109998755 20 + 110733352 AGACAG---AAAAACCATGAAGG a score=33679.0 s hg17.chr17_random 1944489 239 + 2618010 AAAAGGAATTACACTACAAAGTCAAAACTGCTGAATCCACGTTTCTCTGAAAACCAGAGTACAAGAAGGAAAGGAACAGCCCAGAGATGTTCTGGCTGTGGGAAGCCTGTGGACGGCACACAGGGCAGCCATCCCACCNCCAACCTCCCCTCACCTGGAGGCACAGGCACAAGGGTCAACAGGTGGCTCCCGGGCAAAG--------------GTGTCC-TCCCACCTGGTGAGTTAGAGAGGAAGGTGTTAGG s panTro1.chr19 81200785 238 + 82489036 AAAAGGAATTACACTACAAAGTCAAAACTGCTGAATCCACGTTTCTCTGAAAACCAGAGTACAAGAAGGAAAGGAACAGCCCAGAGATGTTCTGGCTGTGGGAAGCCTGTGGACGGCACACAGGGCAGCCATCCCACC-CCAACCTCCCCTCACCTGGAGGCACAGGCACAAGGGTCAACAGGTGGCTCCCGGGCAAAG--------------GTGTCC-TCCCACCTGGTGAGTTAGAGAGGAAGGTGTTAGG s mm5.chr11 120265298 209 + 121648857 AA--------ACACCACAGGTTCAAA---GCTGAAACCAGGTTTCTCTAATGA----AGCATAAG--GCAAAGGAGTAGTCCAGGAATTTATGGGCCAC---ATCTCTCTAGATATCACTCA--GCAGACCTCC--CC-ATGCCCCCTCATCACCTCATGGTGCACGCA-AAACATC--CAGGCAGTGCCTGCCCAAAGACCACTGC-GCTCTATAGGC-TCCCACCTATCCAGTTGGA--------------- s rn3.chr10 109998775 208 + 110733352 AA--------ACATCGCAGGTTCAAA---GCTGAAGCCAAGTTTCTCTGATGA----AGCATAAG--GCAAAGGAGCAGTCCAGGAATTTATGGGTCAC-----ATCTCCAGATTCCATTCA--GCAGACCACC--CC-ATA-CCCCTCATCTACTTATGGTGCAGGCA-AAATGCA--CAGGCAGTGCCAGCCCAAAGGACACTGCTGCTCTGTAAGCTTCCCACCTATCCAGTTAGA--------------- s canFam1.chr18 30388297 190 + 66173745 AGAAAGGATGCTGTTATGAAGTCGTAACTGCTG-ATCCACGTT--TCTGAGAACCAGAGCACCAGAAGCTAAGGAACAGCCC------TACCCAGTCATATGAATCTGGCA--------ACA--ACAGGGCGCC--CC-AACCCACCCTGTCACTTCCTGGTACAGGCA------GC--TAGGTAG----------------------------------GCGCATCCACCAGGTGGGAGAGGAAGGAGTCAGG a score=0.0 s hg17.chr17_random 1944728 45 + 2618010 TGTGAGGCAGGAAAGAAGATAAGAAAGAAGACAGGCAGCTTCGGC a score=8316.0 s hg17.chr17_random 1944728 36 + 2618010 TGTGAGGCAGGAAAGAAGA-TAAGAAAGAAGACAGG---C s panTro1.chr19 81201023 36 + 82489036 TGTGAGGCAGGAAAGAAGA-TAAGAAAGGAGGCAGG---C s mm5.chr11 120265507 36 + 121648857 -GTAAGGCATG--AGGACA-GTGGGAAGGAGACAGGCCTC s rn3.chr10 109998983 34 + 110733352 -GTGAGGCATC--AGAACAGTAGGGAAGGAGACAGG---C a score=973.0 s hg17.chr17_random 1944764 9 + 2618010 AGCTTCGGC s panTro1.chr19 81201059 9 + 82489036 AGCTTTGGC s mm5.chr11 120265543 9 + 121648857 ACCCACAGC a score=4831.0 s hg17.chr17_random 1944773 149 + 2618010 CCTCCAGGAGCGGGGACCCCCC-GCCACNCCCCACAACCCATGCCAACTTCAGGTGTCCAACACCAGATGGGGCTGCTCCCTCCATCCCCAACTCAGGTTCTCCCACCCCCTCCCAGCTGGACAGACACCAAAATCCTGGCCCAGGCCTG s panTro1.chr19 81201068 149 + 82489036 CCTCCAGGAGCGGGGACCCCCCCGCCAC-CCCCACAACCCATGCCAGCTTCAGGTGTCCAACACCAGATGGGGCTGCTCCCTCCATCCCCAACTCAGGTTCTCCCACCCCCTCCCAGCTGGACAGACACCAAAATCCTGGCCCAGGCCTG s mm5.chr11 120265552 51 + 121648857 CTCCCAGG-----------------CAC----------------CAACTCTA---ATCTCACACCAGGTA-------------------------------------------CTAGCT--ACAGCCACAGA------------------ s canFam1.chr18 30388487 106 + 66173745 CCTGGCGGAGCAGCAGCCATCT---CCC--------TCCCGAGCAGACTCCAGCT-------ACCAGGGGAGACTGCTCCCCACGCTCG------------------------TCAGCC--CCCGACACCACAGCTGTGGCCCAAGCAAG a score=200255.0 s hg17.chr17_random 1944922 324 + 2618010 GACTCCAACAGTGGGACGAATCAAACAGTTCCAGTTCTACACACATTTCTATTTTATTATGGAAAAGGTGGAAACGCCACNCTTCTCCACAACAGCAACCAGTAAAATTTATCCCAAAAATAACTCGGTACAAAACAGGTCTGTTTCAGAATTaaaaaaaaa----------------------aaaaaa-------------gaaaaaaaaaaaaCCTTTACATGAG-TTTTTAAATCCTATTTTAAAAC-------------------------ATAAAA-------GAAACAAATCCATCATTGGCCGCACAGCCCC--AGCCACCGCCCC--CCAACCAGGGAGCA-AGAGGAGACGCCTGGGTCCTGTTCCGCACGCGGATTTGCTGGTCTG s panTro1.chr19 81201217 321 + 82489036 GACTCCAACAGTGGGACGAATCAAACAGTTCCAGTTCTACACACATTTCTATTTTATTATGGAAAAGGTGGAAACGCCAC-CTTCTCCACAACAGCAACCAGTAAAATTTATCCCAAAAATAACTCGGTACAAAACAGGTCTGTTTCAGAATTaaaaaaaaa----------------------aaaaag---------------aaaaaaaaaaaCCTTTACATGAG-TTTTTAAATCCTATTTTAAAAC-------------------------ATAAAA-------GAAACAAATCCATCATTGGCCGCACAGCCCC--AGCCACCGCCCC--CCAACCAGGGAGCA-AGAGGAGACGCCTGGGTCCTGTTCCGCACACGGATTTGCTGGTCTG s mm5.chr11 120265603 377 + 121648857 GACTCTAATAGCAGGATGGACCAGACAGCTCCAGTTCTACACACATTTCTATTTTATTATGGCAAAGGTGAAAATGCCAC-CTTCTCCACAACAGCAACCAGTAATATTTATCCCAAAAATAACTCAGTACAAAACAGGTCTGTTTCAGAATTAAAAAAAAAAACAAAAAACAAAACAAAAACCAAAAAA-------------GAAAAAAAAAAAAACTTTACATGAG-TTTTTAGATCCTATTTTAAAACAGGAAGAAAAAAAAAAAGAAAAGAAATAAAAAGAAAC-AAAACAAATCCACCATTGTCTGCACAGTTCA--GTTGCCAACCCT--CCCTCTAGGCATCACAGGCGAGGCTTCTGGGTCCTGTTACTTGTGTGGATTTGCTCAGTTG s rn3.chr10 109999084 342 + 110733352 GACTCTAACAGCAGGATGGACCAGACAGCTCCAGTTCTACACACATTTCTATTTTATTATGGCAAAGGTGAAAATGCCAC-CTTCTCCACAACAGCAACCAGTAAAATTTATCCC-AAAATAACTCAGTACAAAACAGGTCTGTTTCAGAATTAAAAAAAAA----------------------AAAAAAA----------GGGGGGAAAAAAAAACCTTTACATGAGTTTTTTAGATCCTA-TTTAAAACAGGAAAAAAA---------------AAAGAAACAAACAAAAACAAATCCACCATTGTCTGCACAGTCCA--GTTGCCAACCCT--CCCTCTAGGCGTCA-AGACGAGGCTTCTGGGTCCTGTTACTTGTGCGGATTTGCTTGGTTG s canFam1.chr18 30388593 338 + 66173745 GACTGCGACAG-GGGATGAGCCACAGAACTCTAGTTC--CACACATGTCTCTTTTATTATGGCAAAGGTGAAAACGCCAC-CTTCCCCACAACGGCAACCGGTAACATTTATCCCAAAAATAACTCGGTACAAAACAGGGCTGCTTCAGAATTaaaaaaaaa----------------------aaagaaaaaaaggagagaaaaaaaaaaaaaaaCCTTTACATGAG-TTTTTAAATCCTATCTTAAAAC-------------------------ATAAAA-------GAAACAAATCCATCATTGGCTGCACAGCCCCCAGTCCACCGCCCCCTCCCGCCAGGGAGCACGGAGGAGACATCTGGGTCCTGCTCCACTTGAGGATCTGCTGGTCTC a score=6893.0 s hg17.chr17_random 1945246 84 + 2618010 TTTAACTGGTGTCCATCTGAANCACAGAGGAG---------AAAGAGGCTT--GCATTCACAGGC------GGCCTGCTCC------CCACTGCGGCT---TTGACCAGG s panTro1.chr19 81201538 84 + 82489036 TTTAACTGGTGTCCATCTGAAACACAGAGGAG---------AAAGAGGCTC--GCATTCACAGGA------GGCCTGCTCC------CCACTGTGGCT---TTGACCAGG s mm5.chr11 120265980 102 + 121648857 TTTAGCTGGTGTCCATCTGCAAGAGAGGGGGAA-GGTCACTAAGGAGGCCCCTGACTCTACTGGCTTT--TAGACTACTACAGTA-GTCACT-CAGTT---CCACCCAGT s rn3.chr10 109999426 109 + 110733352 TTTAGCTGGTGTCCATCTGCAAGAGAGGGGGAACGTTCACTAAGGAGGTCCCTGACTCTACTGGCTTTAAGAGGTTACCACAGTAGGTCACT-CAGCTCCACCACCCAGT s canFam1.chr18 30388931 75 + 66173745 TTTAGCTGGTGTCCATCTGAAACACAGA-----------------AACTTC--CGCTCAACAAGA------GCCCTCACGC----TTCCAGT-CAATT---CTTGCC--C s fr1.chrUn 220820114 67 - 349519338 TCTAACTGGTGTCCATCTGAAAAGCAAT-------------AAAAATG-----GCAATTATTGTA----------CATTCC------------AAGCT---TTACCCAGA a score=-1525.0 s hg17.chr17_random 1945330 17 + 2618010 CCCCC-AGCT----GGCTCCCC s panTro1.chr19 81201622 17 + 82489036 CCCCC-AGCT----GGCTCCCC s mm5.chr11 120266082 19 + 121648857 CCTCTGAGCCCAAGGACTC--- s rn3.chr10 109999535 17 + 110733352 CCTCT-CTCT----GAACCCAG s canFam1.chr18 30389006 15 + 66173745 TCCCC-AACC------CTCGTC a score=194.0 s hg17.chr17_random 1945347 2 + 2618010 CG s panTro1.chr19 81201639 2 + 82489036 CG s rn3.chr10 109999552 2 + 110733352 GG s canFam1.chr18 30389021 2 + 66173745 TG s galGal2.chr3_random 656012 2 + 1636275 CA a score=-3246.0 s hg17.chr17_random 1945349 2 + 2618010 G---G s panTro1.chr19 81201641 2 + 82489036 G---G s mm5.chr11 120266101 1 + 121648857 ----A s rn3.chr10 109999554 5 + 110733352 ACTCA s canFam1.chr18 30389023 2 + 66173745 T---G s galGal2.chr3_random 656014 2 + 1636275 G---C s fr1.chrUn 220820208 2 - 349519338 G---A a score=116909.0 s hg17.chr17_random 1945351 60 + 2618010 ACTCACTCTCGCATTATAGGCGTCCAGCTGGGCATCCAGCTCCTCTGCCGAAAGCTGCTG s panTro1.chr19 81201643 60 + 82489036 ACTCACTCTCGCATTATAGGCGTCCAGCTGGGCATCCAGCTCCTCTGCCGAAAGCTGCTG s mm5.chr11 120266102 60 + 121648857 ACTCACCCTTGCATTGTAAGCATCCAGCTGTGCGTCCAACTCCTCTGCAGAAAGCTGCTG s rn3.chr10 109999559 60 + 110733352 ACTTACCCTTGCATTGTAAGCATCCAGCTGTGCGTCCAACTCCTCTGCAGAAAGCTGCTG s canFam1.chr18 30389025 60 + 66173745 ACTTACTCTTGCGTTATAAGCATCCAGCTGGGCATCCAACTCCTCTGCAGAAAGCTGCTG s galGal2.chr3_random 656016 60 + 1636275 ACTTACCCTGGCATTGTAAGCATCCAGCTGTGCATCTAGTTCTTCTGCAGAGAGCTGCTG s fr1.chrUn 220820210 60 - 349519338 GCATACTTTGGCATTGTAGGCATCTAACTGGGCATCCAGCTCCTCTGCAGACAGTTGAGG s danRer1.chrNA 46052795 60 + 390413307 ACGCACCCTAGCATTGTAGGCGTCTAGCTGGGCGTCGAGCTCCTCCGCCGAGAGCTGTTG a score=28116.0 s hg17.chr17_random 1945411 29 + 2618010 CTTTGAATTNCCTGCCGGCACCTCTGCCT s panTro1.chr19 81201703 28 + 82489036 CTTTGAATT-CCTGCCGGCACCTCTGCCT s mm5.chr11 120266162 28 + 121648857 CTTTGAGTT-CCTGCCGGTGCCTCTACCT s rn3.chr10 109999619 28 + 110733352 CTTTGAGTT-CCTGCCGGTACCTCTACCT s canFam1.chr18 30389085 28 + 66173745 CTTCGAACT-CCTGCCAGTGCCTCGACCT s galGal2.chr3_random 656076 28 + 1636275 TTTGGAAGT-TCTTCCAGCCCCTCTGCCT s danRer1.chrNA 46052855 19 + 390413307 ----------CTTGCTGCCGCCGCCGCCT a score=80414.0 s hg17.chr17_random 1945440 129 + 2618010 ------CTTCCACGGGCGCCTCCGCGGGTGCCTCTCCGGGTGCCTCCACCACC---------ACCAAA-----ACCTCCAGC---GCCACGGTTTCTAGTCATGCCA---CCTCT------GTTTACGCTAGCAA--GGAAGACGAA----ACCGTT------------------------CACACACCCG s panTro1.chr19 81201731 128 + 82489036 ------CTTCCACGGGCGCCTCCACGGGTGCCTCTCCGGGTGCC-CCACCACC---------ACCAAA-----ACCTCCAGC---GCCACGGTTTCTAGTCATGCCA---CCTCT------GTTTACGCTAGCAA--GGAAAACGAA----ACTGTT------------------------CACATACCTG s mm5.chr11 120266190 123 + 121648857 ------CTTCCCCGGCTGCCTCCACGTGTCCCTCTCCTGGTG---CCACCACC---------ACCAAA-----ACCTCCAGA---GCCACGGTTTCTTGTCATGCCG---CCTCT------GTTTATGCTAACAA----AAAACAGA----ACTGTG------------------------AGC-TGTCTG s rn3.chr10 109999647 130 + 110733352 ------CTTCCCCGGCTGCCTCCACGAGTGCCTCTCCTGGTG---CCGCCACC---------ACCAAA-----ACTGCCAGA---ACCACGGTTTCTTGTCATGCCA---CCTCT------GTTTATGCTAACAG-AGGAAAACAGAACTCACTGTG------------------------AGC-TATCTG s canFam1.chr18 30389113 126 + 66173745 ------CTGCCCCGGCTCCCTCCACGAGTGCCTCTCCTGGTGCCGCCGCCACC---------ACCGAA-----ACCTCCAGA---GCCACGGTTTCTAGTCATCCCA---CCTCT------GTTTACGCTGCCAA--GGTAGAGGGG----ACT---------------------------CACTCACGTG s galGal2.chr3_random 656104 155 + 1636275 ------CTCCCTCTGCTCCCGCCACGACTACCTCGCCTGGTA---CCTCCACC---------ACCAAA-----TCCTCCTGAACCACCACGGTTTCTGGTCATGCCA---CCTCT------GTTTACACTGTGATTTTTAAAAAGCA----ACTGTTATAGTGCATTCTGGTTAACCCCAACAGGCACTCA s fr1.chrUn 220820333 119 - 349519338 ------CTTCTAAAGTTCCCGCCACGTGCGCTTCGGCTTTTT---TCCCCCCA---------GTCAAACTTAGGCTGCCCAA---GC--------CTGGTTCTGTCAAATCCTCT------G------CAAAGAG--CAAGATCAAG----ATCTTT------------------------TGT-GATCGG s danRer1.chrNA 46052874 147 + 390413307 CCTCGACCGCCTCGTCCCCGACCTCTGGATCCTCCACCTCGGCCTCCGCGACCCTTCTGCATGCCAAA-----ACCTCC------GACTCGGTTTCTGTTCATGCCA---CCACCTCCACGATTTAGACTGTTGG--GAAGGAAAAG----ACAGTT------------------------AAGTCACCCG a score=90695.0 s hg17.chr17_random 1945569 158 + 2618010 G-----AA------GGA-----------------CCCTAAGAGCGACGCAGCCTC----------ACCCNTCGGCCAATCCCCTTCCC-------------CAGAGGCCCCGGAA------------GTCACCTCTG-TGCAGGCCTCCGCTGTGCGTCAATCTGTGACGTGACAAGCTGAATGTTCATGGGGCGGCCTGCGGCAAAGAATACGAGAAGGCA s panTro1.chr19 81201859 157 + 82489036 G-----AA------GGA-----------------CCCCAAAAGCGATGCAGCCAC----------ACCC-TCGGCCAATACCCTTCCC-------------CAGAGGCCCCGGAA------------GTCACCTCTG-TGCAGGTCTCCGCTGTGTGTCAATCTGTGATGTGACAAGCTGAATGTTCATGGGGCGGCCTGCGGCAAAGAATACAAGAAGGCA s mm5.chr11 120266313 159 + 121648857 G-----CA------AGG-----------------CCTTGAGGGTGGCACTATCATAA--------ACCA-CAGGTCTCTTTCCCCATC-------------CGAGGACCACAGAA------------CTCACCTCTG-TGCAGGTCTTCGCTGTGTATCAATCTGTGATGTGACAAGCTGGATGTTCATAGGGCGGCCTATGGTAAAGAACACAAGAAGTCT s rn3.chr10 109999777 159 + 110733352 G-----CA------AGG-----------------CCTTGCCGGTGGCACTATCATAA--------ACCA-GAGGCCTTTCCCCATCTC-------------CAAGAACCACAGAA------------CTTACCTCTG-TGCAGGTCTTCGTTGTGTATCAATCTGTGATGTGACAAGCTGGATGTTCATAGGGCGGCCTATGGTAAAGAACACAAGAAGTCT s canFam1.chr18 30389239 161 + 66173745 ATGTTCAA------AGG-----------------CCCATGGGGTGA-GCGCCCACTT--------ACCA-CAGGTCAGCACCGT--CC-------------CAAAGACCCCAGAA------------CTCACCTCTG-CGCGGGTCTCCGCTGTGTGTCAATCTGTGACGTGACAAGCTGAATGTTCATGGGGCGGCCTGTGGCAAAGAATACAAGAGGACA s galGal2.chr3_random 656259 183 + 1636275 G-----AAGTTTGCAGG-----------------ACACGAGGAGGATCCATGCTTCC--------TACA-CAGGCCAGTTCACTCCCCGTGCTGACTGGCACAGCGACTCCCGCGGCAGTACGGCTTCTCACCTCTG-TGCTGGTCTCCTCTGTGTGTCTATCTGTGATGTAACCAGCTGAATGTTCATGGGGCGCCCTGCAGGAAA-------AGCAGACA s fr1.chrUn 220820452 160 - 349519338 G-----GA------TAAACTGCTTTAATATGTACCTTCTGACGTAAAACAATCAACACAGCAGTGCCTT-TAGCTTCATACCCTACCC-------------T----GCTGTGGAT------------GT----TCTACTGCTTGCCTCCACT-----------TGTGATGTCACTTGTTGGATTTTCATTGGGTGGCCT------AAGAAAATCAAACGGCA a score=10425.0 s hg17.chr17_random 1945727 42 + 2618010 CGTTCTATTGAGAGGNCTCTGAAACCCACCCAGCTGGCGCCA s panTro1.chr19 81202016 41 + 82489036 CGTTCTATTGAGAGG-CTCTGAAACCAACCCAGCTGGCACCA s mm5.chr11 120266472 37 + 121648857 CACTCC----AGAGG-CTCTGAAGCTGACTCAGAGGGCACCA s rn3.chr10 109999936 37 + 110733352 TACTCC----AGAGG-CTCTGAAGCTGACCAAGAGGGCACCA s canFam1.chr18 30389400 39 + 66173745 CATGCAGTT-AGAGG-GCTCGAAACGCGCCGAG-GGGCACCA s galGal2.chr3_random 656442 36 + 1636275 GTTACT-----GTGA-GTATGGCAGGCACACAGATGCCACCA a score=382662.0 s hg17.chr17_random 1945769 527 + 2618010 CACCCTGGTCTCCATGCAAACACTGGAAAGGGCCTCTGTGCGTCTCAAATGCCCCCGACAAGGGAAATGGCCTGGAGATACTGGTGGGAGAACAAAATGGCA-AGGAAGCAACCCCACCAACACCTCCTCACTCCTTCTCAGTCCAGACTAGGTGGGCTGCTCGCTGAGGTA-TCGGGGTGCTCGTGGGTGGAGANGGTGTGGGTGACCTGAC-GAAGAAGAACCGGTACCTTTGTCTTTACGACTACAGCCCCGCACTCAGAGGTGTACTATGGCGGTTCTGAGAAGGCTTCACAGAAGTGAATCTTCCGGAAGGAGCTGAAGGAGGGGAGGGATGTAGCTTGCTGGATGGGGGTTCACANAGAGGTTGGTCCAGATGTGTGGGGCAGCATGAGAGGTGGCAG-ATGGAAGAGAGAGACAAAGGGGCAAATGCAAAGTGTCCTCAGCCAC------AGGGGTACCCCATATTCCTACCTGGACAGGTGCCAGCCCCAAACTCCACA-----NAGCCCCACAGTCAGCGTGGGTCCACCCCC s panTro1.chr19 81202057 524 + 82489036 CACCCTGGTCTCCATGCAAACACTGGAAAGGGCCTCTGTGCGTCTCAAATGCCCCCAACAAGGGAAATGGCCTGGAGATACTGGTGGGAGAACGAAACGGCA-AGGAAGCAACCCCACCAACACCTCCTCACTCCTTCTCAGTCCAGACTAGGTGGGCTGCTTGCTGAGGTA-TCGGGGTGCTCGTGGGTGGAGA-GGTGTGGGTGACCTGAC-GAAGAAGAACCGGTACCTTTGTCTTTACGACTACAGCCCCGCACTCAGAGGTGTACTATGGCGGTTCTGAGAAGGCTTCACAGAAGTGAATCTTCCGGAAGGAGCTGAAGGAGGGGAGGGATGTAGCTTGCTGGATGGGGGTTCACA-AGAGGTTGGTCCAGATGTGTGGGGCAGCATGAGAGGTGGCAG-ATGGAAGAGAGAGACAAAGGGGCAAATGCAAAGTGTCCTCAGCCAC------AGGGGTACCCCATATTCCTACCTGGACAGGTGCCAGCCCCAAACTCCACA------AGCCCCACAGTCAGCGTGGGTCCACCCCC s mm5.chr11 120266509 531 + 121648857 CACCCTGATCTCCATGCAAGCTCTGGAAAGGG-CTCTGTGTGTCTCCAATGCCCCCAACAAGGTAAATGGCCTGGAGAGCCTGGTGGGAAAATAAAGTGCAA-TAATAATAACCCCACCAACACCTCCTCACTCCTTCTCAGTTCAGGCTAGGAGGGCTGTTTGGTCAGGTGTTCAGGGTGCTCATGGGCAGACA-GGTGTGGGTGACCTGACGGAAGAAGAACAGGTACCTTTGTCTTTACGACTACAGCCCCGCACTCAG-GTTGTACTATGGCGGTTCTGAGAAGGCTTCACAGAAGTGAATCTTCCGGAAGGAGCTCAAGGAGGGGAGGGATGTAGCTTGCTGGATGGGGGTTCACA-AGAGGTTGGTCCAGATGTGTGGGGCAGCATGAGAGGTGGCAGAATGGAAGAGAGAGACAAAGGGGCAAATGCAAAGTATCCTCAGCCAAGGGGGGGGGGGCAGCCCAGATTCCTACAGGGAGAGGTGCCAGCCCCAAACTCCACA------CGCCCCACAGGCATCCAGGGCCCAGTCCC s rn3.chr10 109999973 522 + 110733352 CACCCTGGTCTCCATGCAAGCTCTGGAAAGGGCCTCTGTGTGTCTCCAATGCCCCCAACAAGATAAATGGCCTGGAGAGCCTGGTGGGA-AATGAAGTGCAA----TAGTAACCCCACCAACACCTCCTCACTCCTTCTCAGCTCAGGCTAGGAGGGCTGTTTGGTCAGGTGTTCAGGGTGCTCATGGGCAGACA-GGTGTGGGTGACCTGACGGAAGAAGAACAGGTACCTTTGTCTTTACGACTACAGCCCCGCACTCAG-GTTGTACTATGGCGGTTCTGAGAAGGCTTCACAGAAGTGAATCTTCCGGAAGGAGATCAAGGAGGGGAGGGATGTAGCTTGCTGGATGGGGGTTCACA-AGAGGTTGGTCCAGATGTGTGGGGCAGCATGAGAGGTGGCAGAATGGAAGAGAGAGACAAAGGGGCAAATGCAAAGTGTCCTCAGCCAC------AGGGGCAGCCCATATTCCTACAGGGAGAGGTGCCAGCCCCAAACTCCACA------AGCCCCACAGGCATCCAGGGCCCAGCCCC s canFam1.chr18 30389439 525 + 66173745 CACCCCGGTCTCCATGCAAGCACTGGAAAGGG--GCTGTGTCTC-CAAATGCTCCCAACAAGGGGAGTGGCCGAGCACTACTGGTGGGAGAACGAGATGGTGCCAATGACAACCCCACCAAAACCTCCTCGCTCCTTCTCAGTCCAG-TTAGCTGGG-TGTCTGGTCAGGTGTCCGGGGTGCTCATGGGTGGAAA-GGTGTGGGTGGCCTGACGGAAGAAGAACCGGTACCTTTGTCTTTACGACTACAGCCCCGCACTCAGAGGTGTACTATGGCGGTTCTGAGAAGGCTTCACAGAAGTGAGTCTTCCGGAAGGAGCTGAAGGAGGGGAGGG-TGTAGCTTGCTGGATGGGGGTTCACA-AGAGGTTGGTCCGGATGTGTGGGGCAGCATGAGAGGTGGCGGAATGGAAGAGAGAGACAAAGGGGCGAATGCAAAGTGTCCTCAGCCAC------AGGGGTAAGCCATACTCCTGCACGGATAGCGGCCAGCCC--GACTCCACGAGACGCAGCCCCTCTAGCATCC-GGGTCCAACCTC a score=100.0 s hg17.chr17_random 1946295 1 + 2618010 C s danRer1.chrNA 46054451 1 + 390413307 C a score=8420.0 s hg17.chr17_random 1946296 6 + 2618010 AGACTC s panTro1.chr19 81202581 6 + 82489036 AGACTC s mm5.chr11 120267040 6 + 121648857 AGACTC s rn3.chr10 110000495 6 + 110733352 AGACTC s canFam1.chr18 30389964 6 + 66173745 AGACGC s galGal2.chr3_random 656508 6 + 1636275 AGACTC s danRer1.chrNA 46054452 6 + 390413307 AAACGT a score=294248.0 s hg17.chr17_random 1946302 153 + 2618010 ACCATCCAGAGGGACGCCGTTGTACTGCTTCATGGNCTTCAGGGCATCTGCCTTCCGCTCAAAGTGCACGTCTGCTGTTCCTAAGCTGCGACCAGAGCGATCATAGTGCACAGCCGCCTTCTTCAGCGTTCCAAATTCAGCAAAGAGTTCCTG s panTro1.chr19 81202587 153 + 82489036 ACCATCCAGAGGGACGCCGTTGTACTGCTTCATGGCCTTCAGGGCATCTGCCTTCCGCTCAAAGTGCACGTCTGCTGTTCCTAAGCTGCGACCAGAGCGATCATAGTGTACAGCCGCCTTTTTCAGCGTTCCAAATTCAGCAAAGAGTTCCTG s mm5.chr11 120267046 153 + 121648857 ACCATCCAAAGGGACACCATTGTACTGTTTCATAGCCTTCAGGGCATCTGCTTTCCGTTCAAAGTGCACATCTGCTGTCCCTAAACTTCGTCCAGAGCGATCATAGTGCACAGCAGCTTTTTTCAATGTCCCAAATTCAGCAAAGAGTTCCTG s rn3.chr10 110000501 153 + 110733352 ACCATCCAAAGGGACACCATTGTACTGTTTCATAGCCTTCAGGGCATCTGCTTTCCGTTCAAAGTGTACATCTGCTGTCCCTAAACTTCGTCCAGAGCGATCATAGTGCACAGCAGCTTTTTTCAACGTTCCAAACTCGGCAAACAGTTCCTG s canFam1.chr18 30389970 153 + 66173745 ACCATCCAGAGGGACGCCGTTGTACTGTTTCATAGCTTTTAGGGCATCTGCCTTCCGTTCAAAGTGCACATCGGCTGTTCCTAAACTGCGCCCGGAGCGGTCATAGTGTACAGCTGCCTTCTTCAGAGTTCCGAATTCAGCAAAGAGTTCCTG s galGal2.chr3_random 656514 153 + 1636275 ACCATCCAAGGGGACTCCATTGTACTGCTTCATAGCTTTCAGAGCATCTGCTTTTCTTTCAAAATGCACATCTGCTGTCCCTAGACTGCGTCCAGATCTGTCGTAGTGCACTGCCGCCTTCTTCAAGGTCCCAAATTCTGCAAAGAGTTCCTG s fr1.chrUn 220820950 153 - 349519338 ACCATCAAGAGGGACACCATTGTATTGCTTTAAGGCTTTCAGTGCATCTGCCTTAAGTTCAAAATGAACATCCGCTGTTCCTTTACTGCGGCCTGACCGGTCATAGTGGACGGATGCCTCTTTTAATGGCCCGAACTCTGCAAACAATTCCTG s danRer1.chrNA 46054458 153 + 390413307 ACCATCAAGGGGAACACCGTTGTACTGTTTCATGGCTTTCAGGGCGTCCGCTTTCCTCTCAAAGTGAACATCCGCAGTGCCGAGGCTGCGTCCTGAGCGATCGTAATGTACTGCTGCTTTCTTCAAAGTGCCAAATTCTGCAAAGAGTTCCTG a score=2881.0 s hg17.chr17_random 1946455 2 + 2618010 GG s panTro1.chr19 81202740 2 + 82489036 GG s mm5.chr11 120267199 2 + 121648857 GG s rn3.chr10 110000654 2 + 110733352 GG s canFam1.chr18 30390123 2 + 66173745 GG s galGal2.chr3_random 656667 2 + 1636275 AG s fr1.chrUn 220821103 2 - 349519338 AG a score=-2018.0 s hg17.chr17_random 1946457 4 + 2618010 AGTT s panTro1.chr19 81202742 4 + 82489036 AGTT s mm5.chr11 120267201 1 + 121648857 A--- s rn3.chr10 110000656 4 + 110733352 AAGT s canFam1.chr18 30390125 4 + 66173745 GGCC s galGal2.chr3_random 656669 4 + 1636275 AAAC a score=5093.0 s hg17.chr17_random 1946461 7 + 2618010 GCAGAGA s panTro1.chr19 81202746 7 + 82489036 GCAGAGA s rn3.chr10 110000660 7 + 110733352 GGAAAGA s canFam1.chr18 30390129 7 + 66173745 GGAAAGA s galGal2.chr3_random 656673 7 + 1636275 AGAGGGA s fr1.chrUn 255083187 7 - 349519338 GCAGAAA a score=2652.0 s hg17.chr17_random 1946468 4 + 2618010 GCAG s panTro1.chr19 81202753 4 + 82489036 GCAG s mm5.chr11 120267202 2 + 121648857 --AG s rn3.chr10 110000667 4 + 110733352 GTAA s canFam1.chr18 30390136 4 + 66173745 GCAG s galGal2.chr3_random 656680 4 + 1636275 GAAG a score=242228.0 s hg17.chr17_random 1946472 635 + 2618010 TTGTCAGAA-AAGCAACAAAACTGCGTTCCTTCTGGTGGCCCAGGGACAGGCCCTGGAAG--------CGTGAGTTGCTTTGGGGG---TGGTTCTCTG----------------GGAGGCAGGACAGTGGTTAACGGGAAATGAGGGAAGGGCGG------GGCAGGAGGGACAGCAACTTCCAAGAGCACCTGGGTCTGAGGGCTCCTG-CCATTGTGGGGACCTGACACGTGTACCACGATGCAGGTAGAGGAAGCTGCAAAGCCCACTAGCAACGGGCACAAAATTAAGCCACTATCCTCTTCAACAAAGGAAAATGTACAACACANCCNCAAGGGCTGTTCCAAGAAACGGTAAAGGCCAAAATCA-AGAGCAAGGGAAGCAGTCCGAT-ATCAGA--CCAGCTTGAAGGGCCT-GTAGATTCGGGAGCCCTGACCCCAGCCCCTCCCCCAAAGGCAGATTCTGGCTCACCTTTCCCTCTCCTCCTACTCAAGCCTGCGGCAAAGTCTGAAGTCAAGCGCTGTCATGGAAACTGCCCTGACCTCAGGCAGGCTGGGAGTTGGAGAGGGAACCCAGAGTGTGGGGATACTCCGGCCNGCAGGCACACAGCGGGAACTGGAGTTCACCAAAAGCGGTTTCCAGTNGGATGCTAGAAACCACCTTAAAAAANA s panTro1.chr19 81202757 607 + 82489036 TTGTCAGAA-AAGCAACAAAACTGCGCTCC-----------------------CTGGAAG--------CGTGAGTTGCTTTGGGGG---TGGTTCTCTG----------------GGAGGCAGGACAGTGGTTAACGGGAAATGAGGGAAGGGCGG------GGCAGGAGGGACAGCAACTTCCAAGAGCACCTGGGTCTGAGGGCTCCTG-CCATTGTGGGGACCTGACACGTGTACCACGATGCAGGTAGAGGCAGCTGCAAAGCCCACTAGCAACGGGCACAAAATTAAGCCACTATCCTCTTCAACAAAGGAAAATTTACAACACACCC--AAGGGCTGTTCCAAGAAACGGTAAAGGCCAAGATCA-AGAGCAAGGGAAGCAGTCCGAT-ATCAGA--CCAGCTTGAAGGGCCT-GTAGATTCGGGAGCCCTGACCCCAGCCCCTCCCCCAAAGGCAGATTCTGGCTCACCTTTCCCTCTCCTCCTACTCAAGCCTGCGGCAAAGTCTGAAGTCAAGCGCTGCCATGGAAACTGCCCTGACCTCAGGCAGGCTGGGAGTTGGAGAGGGAACCCAGAGTGTGGGGATACTCCGGCC-GCAGGCACACAGCGGGAACTGGAGTTCACCAAAAGCGGTTTCCAGT-GGATGCTAGAAACCACCTTAAAAAA-A s mm5.chr11 120267204 594 + 121648857 GGGTAAAAATTAGCAATTAAGCCAATTTCCTTCTTGTAGCTCAGCAACACTTGCTGTAAGT-------CCTTA--TGCTTTAGAGG---TACTTGACTGACAGCCACCCA-GGAAGAAGGCAAGGCAGTGGAGATTAAGAGCTGAGGGAAGGG----------------GAGACAGCAACTGTCGCGAACAACTGGGT--------TACTGTCCACTGTGGGACAATG-TAATTACACCATGCTGTAGATGAGGGAAGACACAAAGTCCTATCACA----GGACAAAACTACAAAACTCTC--TCTCAGC--AGGGGTACTTTCAACTTGACT--AACTGC-GTTTCACTAAATACCAGAGGCCAAT-----------AGTAAAACTGTCCATTGAGCAGA---CAACGCAAAGGGCCCAGTATTTTGGGGAACTGTGA-CACAGCCCCTACTGCAAAGGCAGGTTCTAGCTCACCTTCCCCTTTCCTCCTACTGCCTGCTGCTGCCAAGTCTGAAGTGAAATGCAG-CATGGAACCTGTCCT-----------GGCTGGGAGTTGGAGAGGGAACCCACAGAGTAAGG-CACTTCAGCT-GCAGGCACACAGTGGGGAGTACAGCT-AGCTAAAGCAGTTTCCAGT-GGATGCCAGAAACCACCTTTAAAAA-A s rn3.chr10 110000671 615 + 110733352 AAATTAGCA-GAGCAATGAAGCCATTTTCCTTCTAGTAGCTTGGCAACACTT-ATATGAGCACTCGTGCTTGAAGTACTTTA----------CTGACAG----CCACTCA-GGAAGGGGGCAAGGCAGT-GCAATTAAGAGCTGAAAAAAAGGATGTTCTATATCAAGAGAAATGGCAACTTTCACAAACACTGGGGT--------TCCTGTCCATTTTGGGACTGTG-TAACTACACCATGAC---CGTGAGGGAAGACACAGAGTCCTGTCACA--AGACAAAAGATTAAGAAACC-TC--TTTCACC--AAGGGTACCTACAACTTGCTT--AATGGCTGTTTCACCAAACAGCAGAGACCAAA-----------ACTAAAACTTTCCATAGAGCAGA---CAACTCAAAGGGCCC-ACTGATTTGGGAGCTGTGA-TCCAGCCCCTACCCCAAAGGCAGATTCTAGCTCACCTTTCCCTCTCCTCCTACTCAAGCCTGCTGCAAAGTCTGAAGTCAAATGCAC-CATGGAACCTGCCCTGACTTTAGGCAGCCTGGGAGGTGGAGAGGGAACCCACAGTGTGAGG-CACTTCAGCT-GTAGACACATAGTGGGAAGTGGAGTTCACCAAAAGTGGTTTCCAGT-GGATGCCAGAAACCACCTTAAAAAA-A s canFam1.chr18 30390140 638 + 66173745 CTGTTAGTG----------AGGTGCTTCCCTTCCTGTGGCCCAG-GACAGTCCCTGGGAG--------GGTGAGCTGCTGAGGGGGGGTTATTTCCCTGGGAGGCAGACACGTATTGGGGCAGGGCACT-GGTAGTGGAAACCACGGGGAGGGAGG------GGCAGATGGGACAGCCACTTCCCGGAGCAGCTGGGTCTGAGGGCTCCTG-CCAGTGTGGGGACCTTACATCAGTACCAGGATGCAGGTAAAGGA--CCACAGAACCCGCCAGTGAAGGGAACAAGATTAAGTCGCTATCTTCTTCAACAGAGGAAAACTGACAACACACCC--AAGGACTGTACCAAGAAACCGCAAAGGCCAAGATCACAGAGCAAGGGATGCTATCCGACATGTGGACACCAGCTCACAGGGCCC-GTCGATTCGGGAGCCCTGA-CCCAGCCCCTCCCCC-AGGGCAGATTCTGGCTCACCTTTCCCTCTCCTCCTACTCAAGCCTGCCGCAAAGGCTGAAGTCAAGCGCTGCCATGGAAACTGCCCTGACCTCAGGCAGGCTGGGAGTTGGAGAGGGAACCCAGAGTGTGGGGCTACTCCGGCC-GCAGGCACACAGCGGGAAGTGGAGTTCACCAAAAGCGGTTTCCAGT-GGATGCCAGAAACCACCTTAAAAAA-A a score=60887.0 s hg17.chr17_random 1947107 586 + 2618010 GTGTTGAGACACTGTGAGTGCTCACTGGCCCTACTCTGTCCTCCCAAGG------CAAATGGCTGGGCTGTGGGCAA-CTGAACCC--------------------------------TGCCCNAGC-CATCT------------------CCAAAACTGATTCCCAAAAAGTCATTTCTTAACCAGAAAACAAGTTGAAATGCCATTGGGATTCAATTTTTCTTT-----------------------TTTTAAAAAAGAA--------------------------------------------------------AAGCTTCAACCAAAGATGG---------------ATTT----------GAGAGTCATGTCACTGACGGGACACGGCGGTGGGGAGTGATAAAACCACANGCGT--ACAAGGNTCTTTATAAGA-------CAGTACTCAAGGCAAACAGAGCCAGAAAAACAGACTCC--------------CTGTGCTTCACA----------AGATACATAAAGAAGATTC------TTTTTCTCACATTAACCCACTAAGACAGGCACAAAATTTAAAAAGCAA-----------CTGGGCTGGGTCTAACAG--CCAAAAACCACTCACATTTGGTCAGTCTTTGTCCCTGNTTAGAAACTGGAAGCCCTGGCAGGGGATTTTCACT----CACAG----------------AACCCATCNTTCAGACTAACAGCAGCAGTTCCTCAGGCTCAGCTAGGCTCG-CACCTGCCTGCGCACTGACC--CCGGCTTTACTAGCACTGGGTCTG----------------T s panTro1.chr19 81203364 581 + 82489036 GTGTTGAGACACTGTGAGTGCTCACTGGCCCTACTCTGTCCTCCCAAGG------CAAATGGCTGGGCTGTGGGCAA-CTGAACCC--------------------------------TGCCC-AGC-CATCT------------------CCAAAACTGATTCCCAAAAAGTCATTTCTTAACCAGAAAACAAGTTGAAATGCCATTGGGATTCAATTTTTCTTT-----------------------TTTTAAAAAAGAA--------------------------------------------------------AAGCTTCAACCAAAGATGG---------------ATTT----------GAGAGTCATGTCACTGACGGGACACGGCGGTGGGGAGTGATAAAACCACA-GCGT--ATAAGG-TCTTTATAAGA-------CAGTACTCAAGGCAAACAGAGCCAGAAAAACAGACTCC--------------CTGTGCTTCACA----------AGATACATAAAGAAGATTC------TTTTTCTCACATTAACCCACTAAGACAGGCACAAAATTTAAAAAGCAA-----------CTGGGCTGGGTCTAACAG--CCAAAAACCACTCACATTTGGTCAGTCTTTGTCCCTG-TTAGAAACTGGAAGCCCTGGCAGGGGATTTTCACT----CACAG----------------AACCCATC-TTCAGACTAACAGCAGCAGTTCCTCAGGCTCAGCTAGGCTCG-CACCTGCCTGCGCTCTGACC--CCAGCTTTACTACCACTAGGTCTG----------------T s mm5.chr11 120268004 584 + 121648857 GTGTTGAGACACTGTGAGTGCTCACCAGCCTTGTTCTTTTCTCCCATGGGGAGGTCAAACAGCTGGGCTCTGGGGAA-CGGTACCC---------------------------AGAAAGGCCC-AGCACACCTGACTCAGTTCTGGCTATATCAAAGCTAATTCCCAAAATTATGCCTTGTAACCAGAGAAC---TCTAAATGCCTCTGAGGTCCAGTTTATAAAGAAA--------------------TTTAAAAAGACAC--------------------------------------------------------AAAATCCAAGAAGGGAGGGGAAGAGAAAAAAAATATTTCGAAGGCATGGAGAACCATGACCCAGGTAAGACCCAG-----------GAAAGATCGCCA-GT-----TAAGA-TC----------------CAGCAC-----AGAGACGCAGGCTGGAAGATACTCTCA-------------GCCACCTTTCTCA--------------GCATCTGGGAGATGCTGGACTTCCTTCTCCTATCAGTTCACCATATCGAGCAT-AAATCTGAGAAGCAAGCACCTTTCGGTCATGCTGGGACCGG------------------AGTTGTGGCCAGTCTGTG---CAGGTTAGAAACTGTAAGCTCTGGCACAGGGCAGGCGCT----CACAG-------------------------TTTGG----ACAGCAGACAGGACTCATTTTTAGGGGGGCGCG-CGCACACACACACA---------------TACACACACAGTGTGTG-ACATC---------TT s rn3.chr10 110001286 598 + 110733352 GTGTTGAGACAC--TGAGTACTCACTAGCCTTGTTTTTTCCTCCCATGGCAAGGCCAAATGGCTTAGCTCTGGGAAA-TGGTACCTGG-------AAAGGCCCAGTACACCTGACCCAGCTCC-AGC-TATGT------------------GGAAAACCATCTCGTAAAAAGTTGCCTTGTAACCAGAAAAC---TCTAAATGCCTTTGAAGTCCA---------------------------------GTTTAAAAAAAAA--------------------------------------------------------AAAATCCAA--GGGGTTGG---------------GGGA----------GAAAAAAATATTTCA---AAGGTATGG--------------AGGACCACAAGCCCTGATGAGA-CCCAGGAAAGAT------CACCAGTTAAGATACAGGGATTCAGGCTGGAAAGCCCA-----------CAGCCATCATTCACAGAATGCTGTCGGGTATCTGGGGAAAAACC-----TTCCTTATCTAATCAGTTCACTATAATGGGCACAAGATCTGAGAAGCAA-----------GCA-GCTTCTTCTGTCAT--ATTGGAAC--CTCAGTTATGGCCAGTTTGTG---TGGGTTAGAAACTGGAAGTTCTGGCAGAGGGCTGATGCT----CATGGTTTGTACAGCAGAAAAGACTCACT-TTTAGGGGTACA-CAG------TTTATCTGCAGCCTGGCTTATCGGTCGTGTTCAATCAAACA--CAGGAGACACA---ACTGTTTCTG----------------A s canFam1.chr18 30390778 706 + 66173745 GTGTTGAGACACCGTGAGTGCTCACCGGCCTTGCTCTGTCCTCCCACGG--TAGTCAAACAGCTGGGCTCTGGGGAAGTTGAACCCAGGAAGGCCCAGCACCCT--------------GACCC-AGC-CATCT------------------CTGGGACTGATCCCCAAAATGTCTTTACTTAATCAAAAAACAAGTTTATATGCTTTTGGAATCCaaacaaacaaaaaaacccaaaagaacaaaaacaccccaaaaaaacaaaaccaaaagaccccaaaaaccaaaacaacaacaacagcaacaaaaagaaaacaaagaAGCTTCAACCAAAGTCGG---------------GATT----------GAGAATCATGCCACTAAAAAGAGGGGA--------------AGAAAGACA-GGAT--ATAGGT-CCTGTACGACATGGAGCCGGGGGCTCAAGGCCAGCGGAAC---AAAAGCATGCCCAGCGCCGTCCTGCGTCTGTGCTTTGCC-----CGTAGGCTTCCACAGAAAAAGATC-----TCTGTCCTCCCAGCAAACCGTTAAAAGAAGCACAAAGTAAACAAAACGC-----------AGATCCTAAGCGAGGCAGGAACAGAAACCGCTCAGGTTAGGTCGAGGTTTC---CCG-CCAGGAGC-GAGGGCTCCGGCAGGGGGTTTGCGCCCCCGCGCGG----------------GGCACGAC-TCAGGA---AGAGCGGCAGCTCGTCCCGCTAGGCCGGGCC---CGACCTCCGACACCCCGACCTGCCGGCCGCACT--TCCCGGGCCAGGACCTCCGCTCTGCACT a score=-17977.0 s hg17.chr17_random 1947693 119 + 2618010 CCTGCAGCCCTT-------------------CAGAGCTGGGAGGGCT--C--------CCTTCGCTAAGGCGGGAAGGGGAC--TCAGGGCC-------ACATC----------------CCCA----AAATCACGATCCGT---CCTGTGCAGGG-CGAACGGCTCAC---------------------CGAGAAGCCCTC s panTro1.chr19 81203945 119 + 82489036 CCTGCAGCCCTT-------------------CAGAGCTGGGAGGGCT--C--------CCTTCGCTAAGGCGGGAAGGGGAC--TCAGGGCC-------ACATC----------------CCCA----AAATCACGATCCGT---CCTGTGCAGGG-CGAACGGCTCAC---------------------CGAGAAGCCCTC s mm5.chr11 120268588 166 + 121648857 CCTGCAGCCTGG-------------------CTTATGGGGTCGTGCT--CAAACCCTACTTTTTCTGAGGC---CAAGGCTC--TCAGGGTG-------ACAGTGGCTGGCTCTGGGCAGCCTAGGGGAGGGCAGGTTCCAA---TCTGTAAAGGATCCTGGAGCCCACGTCCGCGTGGGACGAGGAAAGCGGAGAGCTCCC s rn3.chr10 110001884 120 + 110733352 GGCCAAGCCTCT-------------------CAGGGTGACAGCGGCTGGC--------CCTTGGGCAGCCTGGGGGAGGG-----CAGATTC-------CAATC----------------CTTA--AGGGATTCTGGACCACACGTCTGTGTGGGA-TGAGTA---TAG---------------------CGGACAGCTCCA s canFam1.chr18 30391484 135 + 66173745 CCTGCAGCCCTTAGAGGGCCGGCGGCTGCCCCTGGGCCCCGAGGGCT--C--------CCCGCCCTAAGGTGCGGCGCGGGCGGTTCAGGCC-------GCGTC----------------CTCA--------ACGGGGCCAC---CGGGTGCGGG--TGACCCGCTCAC---------------------CGACGAACGCCC s galGal2.chr3_random 658884 127 + 1636275 CCTGCAGCACAG----GGCTGGG--------CACTGTGTGGAGGGCC--C------------TACCACTGGGAGCAGGGCCT--CTAGTGCTCCTGCAGCCACC----------------CCCA----GCATCCAGCACCAA-----TGTTATGAA-TGAAACCCCCCG---------------------GAAACAGCCTCG a score=3196.0 s hg17.chr17_random 1947812 6 + 2618010 GTCTCT s panTro1.chr19 81204064 6 + 82489036 GTCTCT s mm5.chr11 120268754 6 + 121648857 GTCTCC s rn3.chr10 110002004 6 + 110733352 GACTCC s canFam1.chr18 30391619 6 + 66173745 GCCCCT s galGal2.chr3_random 659011 6 + 1636275 AGCCCG s fr1.chrUn 255083272 6 - 349519338 GGCTTA a score=223426.0 s hg17.chr17_random 1947818 205 + 2618010 TACCTGAATATCGGCGTCTGAGACTCCAAAATCCAGATTGGACACCAGCAGTTTCCCACCTGTCTCCACGCCGGCACCACCGCC------------------------------------------GAAGCCACTGTCGAAAAGATCGTGCTGCCACTTGTCGGGAAGTTGTTTTNGGCTGAA---AAAAAAACCGCAA-CAAGAGCAGATCTGTGAGTCTCA--GTCCAGGGCTTTCCTGAC---CCTCACGGCT s panTro1.chr19 81204070 205 + 82489036 TACCTGAATATCGGCGTCTGAGACTCCAAAATCCAGATTGGACACCAGCAGTTTCCCACCTGTCTCCACGCCGGCACCACCCCC------------------------------------------GAAGCCACTGTCGAAAAGATCGTGCTGCCACTTGTCGGGAAGTTGTTTT-GGCTGAA--GAAAAAAACCGCAA-CAAGAGCAGATCTGTGAGTCTCA--GTCCAGGGCTTTCCTGAC---CCTCACAGCT s mm5.chr11 120268760 204 + 121648857 TACCTGAATATCAGCATCTGACACTCCGAAGTCCAGGTTGGACACCAGCAGCTTCCCGCCGGTCTCCACGCCGGCTCCACCCCC------------------------------------------GAAGCCGCTGTCGAAGAGGTCGTGCTGCCATTTGTCGGGAAGTTGTTTC-GGCTGG----AGAGAAACCGTAAGCACAGAGACACTCGTGAGACTC---GTCCCGGGAGCCCGCGACA--CCTCGGCGAC s rn3.chr10 110002010 202 + 110733352 TACCTGAATATCAGCGTCTGACACTCCGAAATCCAGGTTTGACACAAGCAGCTTCCCACCCGTCTCCACGCCGGCTCCACCCCC------------------------------------------GAAGCCGCTGTCGAATAGGTCGTGCTGCCACTTGTCGGGAAGTTGTTTC-GGCTGA----AGAAAAACCGTAA--GGTCAGAGACTCCTGATCCTT---CACCCAGGAGCCTTAAACA--CCCCAGCGAC s canFam1.chr18 30391625 205 + 66173745 CACCTGAATATCCGCGTCCGACACTCCGAAATCCAGGTTGGACACCAGCAGTTTCCCACCCGTCTCCACGCCGGCGCCGCCCCC------------------------------------------GAAGCCGCTGTCGAAGAGGTCGTGCTGCCACTTGTCGGGAAGTTGTTTTCGGCTGCGGGGGAGGAGAGCACAG-GAGCACGCGGCCCGTGAGCGTC---TCCCGCGGACCCTgcggc---gcccgc--ac s galGal2.chr3_random 659017 193 + 1636275 TACCTGGATATCCGCATCTGAGACGCCGAAGTCCAAGTTGGAGACGAGCAGCTTCCCGCCGGTCTCCACACCAGCGCCCGCCCC------------------------------------------AAAACCGCTGTCGAAGAGGTCGTGCTGCCACTTCTCGGGGAGCTGTTTC-GGCTGCA------------ACGA-CAGGGACACCTCGCTGAGCG-----GCGCAGGGGCCCGCCAGCA--CGGCCCGGCT s fr1.chrUn 255083278 219 - 349519338 TACCTGAATATCTGCATCCGAGACGCCGAAGTCTAGATTGGAGACGAGGAGCTTCCCTCCAGTTTCCACACCGGCTCCTCCGCCACTGGCAACGCCGTTGAATCCA------------------CTGAAGCCATTGTCAAACATGTCGTGCTGCCATTTGTCGGGAAGCTGTTTG-GGCTGCA---ACAGA---TGAAA-GAGAACGCACCTGCTGA--------CTTCAGGATCCCCCTGCC---CCTGTCAATT s danRer1.chrNA 46057206 239 + 390413307 TACCTGAATGTCTGCATCGGAGACGCCAAAGTCGAGATTGGACACGAGGAGTTTTCCTCCGGTCTCCACGCCCGCTCCTCCGCC---------GCCACCACCACCACCTCCTCCAGCATTGGAGCTGTAGCCGTTGTCGAACAGGTCATGCTGCCACTTGTCGGGGAGCTGCTTG-GGCTGCA---ACAGA---CGAGA-GAGAACGCACCTGCTGACTTCGGGTCCCCAGTCTGTCACTGACAGTCCACTCGGCT a score=1677.0 s hg17.chr17_random 1948023 2 + 2618010 AC s panTro1.chr19 81204275 2 + 82489036 AC s mm5.chr11 120268964 2 + 121648857 GC s rn3.chr10 110002212 2 + 110733352 CC s canFam1.chr18 30391830 2 + 66173745 gc s galGal2.chr3_random 659210 2 + 1636275 GC s fr1.chrUn 255083497 2 - 349519338 AC a score=-3422.0 s hg17.chr17_random 1948025 66 + 2618010 TCC--------------------------GGACCCTTCCTCTTCCCGGCCTGAGAGGATCCGGCCGAAACGGGGCCGCCAGCGCTCCCTCCG s panTro1.chr19 81204277 66 + 82489036 TCC--------------------------GGACCCTTCCTCTTCCCGGCCTGAGAGGATCCGGCCGAGACGGGGCCGCCAGCGCTCCCTCCG s mm5.chr11 120268966 42 + 121648857 TCT-----------------------------CCCGTCGGCCCCGCGGCCAA---------GGTCGA---GGAGCCCCGAGAG--------- s rn3.chr10 110002214 41 + 110733352 TCT-----------------------------CACGTCTGC-CCGCGGCCAA---------GGTCGA---GGAGCCGGGAGAG--------- s canFam1.chr18 30391832 46 + 66173745 ccc--------------------------cg-ccccccgtcccctcgg-------------ggtccc---ggggccgc---cgTTCCCTCCG s fr1.chrUn 255083501 84 - 349519338 TCCACTCGGCTGGGTGTTGGGGCAAGCAGGGGCTCCACTTCCTCGTGGCCAGGGT------GATCAA--CGACCCCTCCAAAGTGTCCCCCA a score=5496.0 s hg17.chr17_random 1948091 21 + 2618010 GCGCTGCAGCTGCCCCAGCCC s panTro1.chr19 81204343 21 + 82489036 GCGCTGCAGCTGCCCCAGCCC s mm5.chr11 120269008 11 + 121648857 ----------TCCCCCAGCCC s rn3.chr10 110002255 11 + 110733352 ----------TACCCCAGACT s fr1.chrUn 255083585 14 - 349519338 -------AAGCTCCCCAGCCC a score=15023.0 s hg17.chr17_random 1948112 107 + 2618010 GAGGCCGCACGGTCCCACCGCGGCCGCACAACTTCAGTTCCCTTAGACTAACTTCCCGCCGCCTGTGCCGCGCCCAGCGTCCCCTCCTCTCCTGCCACGAGGCCCCA s panTro1.chr19 81204364 107 + 82489036 GAGGCCGCACGGTCCCACCGCGACCGCACAACTTCAGTTCCCTTAGACTAACTTCCCGCCGCCTGTGCCGCGCCCAGCGTCCCCTCCTCTCCTGCCACGAGGCCCCA s mm5.chr11 120269019 61 + 121648857 -------CGCCGCTCCGCTACGGACACCCA-----AGTTCTCT-----------------------------CGCAGCGGCCC-----CCGCCGCCACGAGGCTGGA s rn3.chr10 110002266 61 + 110733352 -------CACCGCTCCACTGCGGCCGCCAA-----ACTTTTCT-----------------------------CACAGCAGCCC-----CCGCCGCCATGAGGCTGGA a score=10097.0 s hg17.chr17_random 1948219 121 + 2618010 ACGTCCGGAACAAACAAAGAGCTGGGAAGGGTCTCAGCCTCCGG---------------GACCGGACCCCGAAAGA-----ACGACCTCGCTCCN-------GNCCACNACC------CCCTCCGC-GCCCACACGCA---CCCTCCGGACCTCCGGG s panTro1.chr19 81204471 121 + 82489036 GCGTTCGGAACAGACAAAGAGCTGGGAAGGGTCTCAGCCTCCGG---------------GACCAGACCCCGAAAGA-----ACGACCTCGCTCCC-------GCCCACCACC------CCCTCCGC-GCCCACACGCA---CCCTCCGGACCTCCGGG s mm5.chr11 120269080 83 + 121648857 CCAC---GACCGGACAAAGCGTCCCGGAAGATCCTGGCCTCGGG-------------------------------------ACGGCCTCGCCCCC-------GCCCACC-CC------TCGGCCGC-GGTCCCGCGCG-------------------- s rn3.chr10 110002327 105 + 110733352 CCAG---GACGGGACAAAGCCTCCCGGAAGATCCCGGCCTCAGG-----------------CCCGGCCTCGCCGC------GCGGCCTCGCCCCC-------GCCCACC-CC------TTCGCTGCAGTTCCCGCGAG---CCTCGCA---------- s fr1.chrUn 255083701 157 - 349519338 ATGTATAGAACAGTCTAATAACTGGGAAAACTTTAAACCCCAAACCCTCCCTTAATCTATACCAACCCTTGGAAAACTCCCCCCATCTCGCTACCAAACACAGCCCACTGCCATCTTGTCATCTCC-GCCTCCACCAAAGGCTCTCCAGATCCTCGGG a score=65324.0 s hg17.chr17_random 1948340 258 + 2618010 CGGCCGCTCCACCAGCCTTATCCAcccgccggcccgggtctccgccgcgagcggccccggccccagccccggctggcccccTCCCACTCTCCGGNGNGGNCGGCCTCCGCACTCACCCNGNTGNAGGGCGCCGGTCGGTTCCTNCCGNCTCCGCCGGCNNCGCCNCGGGCGATGGCCGGNCGGTNNCNGATGNNCCNGNCNNCTCGATTCANTNGCNCGNNGGCNTGCGCCCCACCNNNGNGGCCNCNCTGGNANCCG s panTro1.chr19 81204592 256 + 82489036 CGGCCGCTCCACCAGCCTTATCCAcccgccggcccgggtccccgccgcgagcggccccggccccagccccggctggcccccTCCCACTCTCCGGCGCGGCCGGCCTCCGCACTCACCCTGCTGTAGGGCGCCGGT-GGTTCCTGCCTCCTccgccggccgcgccgcgggcgATGGCCGGCCGGT-TCGGATGGGCCCGCCGCCTCGATTCACTcgcgcggcggcctgcgccccaccgccgcggccgccctgggagccg s mm5.chr11 120269163 209 + 121648857 -GGACGCTCACCCGGTC-------CCGGCCGGCCCGGGC--------------GCACCCTCCCCGGCCC------------------------GCGCCGCAGGTCCCCGCACTCACTCTGCTGTACGGCGCCGGCCGGTTCCTGCCG---CCGCCTGCGGCGCCGCGGGCGATGGCGGGCCGGTTCCTCATAGGCCCGCCGCCTCGATTCACCCGCGCGGCGGCCTGCACTGCGCCGCCGCGGCCGCCCTGGGAGCCG s rn3.chr10 110002432 213 + 110733352 -GGGCGCTCTCCCGGT--------TCGGTCGTGCCGAG----CGCC--------CTCCCGCCCCGGTCC------------------------GTGCCGCACGTCCCCGTACTCACTCTGCTGTATGGTGCCGGTCGGTTCCTGCCGCCGCCGCCTGCGGCGCCGCGGGCGATGGCGGGCCGGTTCCTCATAGGCCCGCCGCCTCGATTCACCCGCGCGGCGGCCTGCACTGCGCCGCCGCGGCCGCCCTGGGAGCCG a score=100.0 s hg17.chr17_random 1948598 3 + 2618010 NNC s mm5.chr11 120269372 3 + 121648857 GCC s rn3.chr10 110002645 3 + 110733352 GCC a score=600.0 s hg17.chr17_random 1948660 1 + 2618010 G s panTro1.chr19 81204910 1 + 82489036 G s mm5.chr11 120269434 1 + 121648857 G s rn3.chr10 110002707 1 + 110733352 G a score=59702.0 s hg17.chr17_random 1948661 199 + 2618010 TCGTCCAGAGACANGTCCATTNNGTCNNCCATGNCGGGCGCGNANTCNGGCATCGGCTC--GAGCCCGCGNNTCAGCACGCCNGCACGTCACNTCNGGCGCNGCGTGAGGCCTNCCGGTGCCACGGCCTCGGAGCGGCTGCTGATTGGCCGCTGGCGGACGGCTGCGCNCGCG------------GGACGGGGTGAGGCGGGGA--GGCGCGTGC s panTro1.chr19 81204911 199 + 82489036 TCGTCCAGAGACATGTCCATTTTGTCGGCCATGGCGGGCGCGGAATCGGGCATCGGCTC--GAGCCCGCGCGTCAGCACGCCGGCACGTCACTTCCGGCGCCGCGTGAGGCCTTCCGGTGCCACGGCCTCGGAGCGGCTGCTGATTGGCCGCCGGCGGACGGCTGCGCGCGCG------------GGACGGGGTGAGCCGGCGA--GGCGCGTGC s mm5.chr11 120269435 178 + 121648857 TCGTCCAAAGACATGTCCATTTTGTCGGCCATGGCGGGCGCGGATTCGGGCCTCGGATC--GAGCCCGCGCGTCAGCACGCCGCGGCGTCACTTCCGGCGCCTCCCCCTGCCTTCCGGCGTCGCGGGCCCGAAGCGAGCGGCGATTGGT-------------CTGGGCGCGC--------------------GCGATTCCGCAG--AGCGCCTGC s rn3.chr10 110002708 178 + 110733352 TCGTCCAAAGACATGTCCATTTTGTCGGCCATGGCGGGCGCGGATTCGGGCCTCGTATC--GAGCCCGCGCGTCAGCACGCTGTAGCGTCACTTCCTGCGCCTCCCTCTGCGTTCCGGCGTCCCGGGTCTGAGGCGCCTACTGATTGGT-------------CTCCGCGCGC--------------------GCGGATCCGAAG--AGCGCTTAC s galGal2.chr3_random 659552 164 + 1636275 TCGTCCAGGGACATGTCCATCTTGTCGGCCATGATGGCGGC-----------TCCGCTCCGGGGCCTGCG---------------------CTTCCGGC----CGCGCTGCG--CCGACGCCG-GAAGCAGAAGAGGCGG--GACCAGC--------GGCGGAGGCGCGCGCGTTCAGGTCCGCTGGGCCTTGTGGGGCGGAGGGTGGCGCTT-- a score=533.0 s hg17.chr17_random 1948860 16 + 2618010 NCACTGGCGTGCGAGA s panTro1.chr19 81205110 16 + 82489036 GCACTGGCGTGCGAGA s mm5.chr11 120269613 15 + 121648857 GTAC-GGCTCGCCGCG s rn3.chr10 110002886 16 + 110733352 GTACAGTTCTCTGAGG a score=15833.0 s hg17.chr17_random 1948876 70 + 2618010 CTCGGCGGGCGCTG--TTGAG--------GGAGTCGGGCCGCGACTGTGGTCGTTTTTATACCTTCCCGCGCGGACGCCG s panTro1.chr19 81205126 70 + 82489036 CTCGGCGGGCGCTG--TTGAG--------GGAGTCGGGCCGCGACTGTGGTCGTTTTTATACCTTCCCGCGCGGACGCCG s mm5.chr11 120269628 64 + 121648857 GT-GGCTGGCGCTACTTCGGA--------GGAGCCCGA-CGCGGC-GCGGTCGTTTTTATACATTCCCGCGCGGA----- s rn3.chr10 110002902 63 + 110733352 C--GGCTGGCGCTCCTTCTGA--------GGAGCCAGA-CGCGGC-ACGGTCGTTTTTATACCTTCCCGCGCGGA----- s galGal2.chr3_random 659748 72 + 1636275 TTCCGGCGGCGATG--TGAAGGGGGGTGCGGAGCTGGA--GCGGC----GTCGCCTCGCCCCCTTAGGGGGCGAACGACG a score=30088.0 s hg17.chr17_random 1948946 113 + 2618010 GCGCTGCCAACGGAAGGGCGGGTAGGGCGGTGCGTGATTAGGTTGGCGAAGGTGCGAGGGCGCAGGGGGTGGGGCGGCGGCCGTTGGAGGCGGAGCCTACGCGCCCCTCCCTC s panTro1.chr19 81205196 113 + 82489036 GCGCTGCCAACGGAAGGGCGGGTAGGGCGGTGCGTGATTAGGTTGGCGAAGGTGCGAGGGCGCAGGGGGTGGGGCGGCGGCCGTTGGAGGCGGAGCCTACGCGCCCCTCCCTC s mm5.chr11 120269692 83 + 121648857 -----GGCAACGGAAGGGCG----GGGCGCCTCGTGATTAGGCC-GCGGAGGTGCGAGGGCG-------------------AGCAGGGGGCGGGGCCTGCGGGCGCCTCCCT- s rn3.chr10 110002965 84 + 110733352 -----GGCAACGGAAGGGCG----GGGCGCCTCGTGATTAGGTG-GTGAAGGTGCGAGGGCG-------------------AGGAGGGGGCGGGGCCTGCTTGCGCCTCCCCC a score=24152.0 s hg17.chr17_random 1949059 252 + 2618010 CCCGCACGCTCCGCCCGATCGGCCAGGGCTGGGGGCGCTGGGGGCGCTACGGGCGCGGCGGGTGCCTGGGAGCTGCTGGGAGTCCTTGTTTCCGCTCCCGCCCAGGACTGTGCGCTC----GGCTCGCGGT-------GGGGTCCGGCGGGCGCGGCTTCGGCGGGCGGCAGCCGCTGCAGACGAGCTGCGGGTTGGTTTTTTGGTCTCCACCTGCAGCCCCCCCAAGTCTGCACTGTCACATTTTGCCAGTCATATCCTTTA s panTro1.chr19 81205309 252 + 82489036 CCCGCACGCTCCGCCCGATCGGCCAGGGCTGGGGGCGCTGGGGGCGCTACGGGCGCGGCGGGTGCCTGGGAGCTGCTGGGAGTCCTTGTTTCCGCTCCCGCCCAGGACTGTGCGCTC----GGCTCGCGGT-------GGGGTCCGGCGGGCGCGGCTTCGGCGGGCGGCAGCCGCTGCAGACGAGCTGCGGGTTGGTTTTTTGGTCTCCACCTGCAGCCCCCCCAAGTCTGCACTGTCACATTTTGCCAGTCATATCCTTTA s mm5.chr11 120269775 211 + 121648857 -------------------------------GGGAGGCCGGAAGATCCTCGGGCGT------CGCCTGGGTGCAGCGCAGTGTGCGCGTCCCGCGTCCCTCCTC--ACCGTGCGATCGTGGGGGTCCCGGCCGGTCCGTGGGTCCGACTTGGTTGTTTTTGCTCGAAGGCTCGGTCTCCTGACGAGC-------TGGCGTCCTCACCCCTGCTT-TAACTTCGCGGATTAGTGACAGTCACTCTTT-----CCATATCTTTAA a score=44521.0 s hg17.chr17_random 1949311 575 + 2618010 CAAGTTTTCTTGCGggccgggcgcgggcctcacgncctgtantcccagcactttgggaggccgaggcnagaggttcgcttcagcccaggagtttgagaccagccggggnnacatcgtgagaccncnatctct-aaaaaaaaanntgagctgggcatgntggtgcnctnctgnactancagctanntnnnngnccnagnngngnnnnntgcttgagcccaggaggtcgaggctgcagtgagnccgtggtggcaccactgcactccagcctgggcgacagagccagaccctgtctccaaaaaaaaaTTATTTTTGCAACTTATTAATGAAAACCNAGTGTGCCATTTCATTGA-ttttttttttttttttttgaggcagtctcattctgtcgcccaggctggagtgcagtggggcgatctcggctcactgcancctctgcctcctgggttcaagcgagtctccagcggcagcctcccgagtagctgggactacaggcacgtgccaccatacctggctaatgtttgtatttttaatagagacag---ggtttcgccatgttggccagggtggtcttgaactcc s panTro1.chr19 81205561 572 + 82489036 CAAATTTTCTTGCGggccgggcgcgggcctcacg-cctgtaatcccagcactttgggaggccgaggcaagaggttcgcttcagcccaggagtttgagaccagccggggcaacatcgtgagacccccatctctaaaaaaaaaaaatgagctgggcatggtggtgcacttctgtactaccagctacttgggaggccgaggtgggaggattgcttgagcccaggaggtcgaggctgcagtgag-ccgtggtggcaccactgcactccagcctgggtgacagagccagaccctgtctccaaaaaaaaaTTATTTTTGCAACTTATTAATGAAAACC-AGTGTGCCATTTCATTGAtttttttttttttttttttgagacagtctcattctgtcgcccaggctggagtgcagtggggcgatctcggctcactgcaacctctgcctcctgggttcaagcgagtctccagcggcagcctcccgagtagctgggactacaggcacgtgccaccatacctggctaatgtttgtatttttaatagagacaggatgg----gccatgttggccagggtggtc-tgaactcc a score=2588.0 s hg17.chr17_random 1949935 28 + 2618010 acaggcatgagccaccacacccagccCA s panTro1.chr19 81206272 28 + 82489036 acaggcgtgagccaccacacccagccca a score=3616.0 s hg17.chr17_random 1949963 24 + 2618010 TTTCATGGATTTTAAGTTGTTTTG s panTro1.chr19 81206300 24 + 82489036 tttcatggattttaagtTGTTTTG s rn3.chr10 110003297 22 + 110733352 TTTCGTGGGTGCAGAG--GTTTTG a score=63230.0 s hg17.chr17_random 1949987 740 + 2618010 AGATACTTGCttttgtttttgttttttgagtcagggtctccctccgtcacccagagtggagtgcagtggtgtgatcttggctcactgcagcctcaaactcctgggctcgagctatcctcccacgtcagcctctcaggcagctggtgcacgccaccacagctggcttttttttttttttttgagacagtcccactatgttgcccaggctggagtgcagtggtgcgatctcggctcactgcaatctctgcctcccaggtccaagtgattcctgtggctcagcttcccgaatagagctgggagctggcgtgatctcagctcgctgcaacctccgcctcccaggttcaagtgattctcttgcctcaccctcccgagtagctgggattacagttgcccaccaccacacccggctaattttttgtatttttagtagagacagggtttcagtatgnttggnccaggctggtcttgaactcctgaccttgtgatctgcctgcctcagcctcccaaagtgctgggattacaggcgtgagccactacgcctggcctctaatttttgtttttttggtagagatggggtttcaccatgttggccaggttggtctcgaactcctgacctcaagtgatccaccctcctcggcctcccaaagtgctgggattacaagcatgagccaccacntgcggcnaattttnttgtattttttgtagagacggagtttnnnnatnnnnncNNNNNNNNNNTG s panTro1.chr19 81206324 735 + 82489036 AGATACTTGCttttgtttttgttttttgagtcagggtctccttctgtcacccagagtggagtgcagtggtgtgatcttggctcactgcagcctcaaactcctgggctcgagctatcctcccacgtcagcctctcaggcagctggtgcacgccaccacagctggcttttttttttttt---gagacagtcccactatgttgcccaggctggagtgcagtggtgcgatctcggctcactgcaatcgctgcctcccaggtccaagtgattcctgtggctcagcttcccgaatagagctgggagctggcgtgatctcagctcgctgcaacctccgcctcccaggttcaagtgattctcctgcctcaccctcccgagtagctgggattacaggtgcccaccaccacacctggctaattttttgtatttttagtagagacagggtttcagtatgtt--ggccaggctggtcttgaactcctgaccttgtgatctgcccgcctcagcctcccaaagtgctgggattacaggcgtgagccactgcgcctggcctctaatttttgtttttttggtagagatggggtttcaccatgttggccaggttggtctcgaactcctgacctcaagtgatccaccctcctcggcctcccgaagtgctgggattacaagcatgagccaccacctgcggctaatgtttttgtattttttgtagagacggagtttcgtcatgttggccaggcCCATTTG a score=15607.0 s hg17.chr17_random 1950727 125 + 2618010 AGATCTTTGAAGATATCCTCAACGTGAGGTAAAACCAAACTCCTGANTGTCCTGTGCTCCCAAATGTGATCTCCTTGTCCGTAAGGAGCTGAGTCCCTTCCCTTGGAGAGAAGAGTGTGCCCTTT s panTro1.chr19 81207059 125 + 82489036 AGATCTTTGAAGATATCCTCAACGTGAGGTAAAACCAAACTCCTGACTGTCCTGTGCTCCCAAATGTGATCTCCTTGTCCGTAAGGAGCTGAGTCCCTTCCCTTGGAGAGAAGAGTGTGCCCTTT s mm5.chr11 120270136 97 + 121648857 AGATCTTTAAAGGCATCCTTAAAG-GTGGCAAAA-TAAACTCGTG-----CCATTAATCCCACAGGC--TCTCCTTG-CCGT------------------CTTTAAAGACAAACACGTGCCTTTT a score=59462.0 s hg17.chr17_random 1950852 684 + 2618010 CTNTANATGGCTAAAGAAACCTCACAGATAGTTCNNTTTTTTCCNttttttttttttttttntttggnagagactcagtctcactgtgttacacaggctggtctcaaactcctgagctcaggcgatcctcccgagttggcctcccagagtgctgggatcacaggtgtgagccacAAAGCGGATTGCTGCTGGGGCTTGCTGTTCTCCCGTAGCTCCCCTGCAGCCCTGACCCTCTGGGCCCAGAGCCCTTTACTTGTTATTTGTTTTAATAGAAACGGGGCTCATagcagggcataggggttcacgcctgtaatcccagcactttgggaggccgcagtggcagatcgcttgaggccaggagttcaagaccagcctggcctancatggtgaaacctcgactactaaaaatacaaaaattagtcgggcgtggagtcacgtgcctatagcctcagctactcaggaggccgaagcacaagaaatgagctgagatcatgccactgcactacagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaa--ttaataaaaataaaaGTAAAATAAAAtagaaacagggctcacgatgtttcccaggctgggttcggactcctgggccggtatgatcttcctgccttggccccctgagtagctgggactgcaCTGTGGCAGGCTTATA s panTro1.chr19 81207184 681 + 82489036 CTCTAGATGGCTAAAGAAACCTCACAGATCATTCTtttttttccttttttttttttttttt----gggagagactcagtctcactgtgttacacaggctggtctcaaactcctgagctcaggcgatcctcccgccttggcctcccagagtgctgggattacaggtgtgagccacAAAGCGGATTGCTGCTGGGGCTTGCTGTTCTCCAGTAGCTCCCCTGTAGCCCTGACCCTCTGGGCCCAGAGCCCTTTACTTGTTATTTGTTTTAATAGAAACGGGGCTCATagcagggcacagtggttcacgcctgtaatcccagcactttgggaggccgcggtggcagatcgcttgaggccaggagttcaagaccagcctggccta-catggtgaaacctcgactactaaaaatacaaaaattagtcgggtgtggagttgcgtgcctatagcctcagctactcaggaggctgaagcacaagaaatgagctgagatcatgccactgcactccagcctgggtgacagagtgagactctgtctcaaaaaaaaaaaaaattaataaaaataaaaGTAAAATAAAAtagaaacagggctcacgatgtttcccaggctgggttcggactcctgggctggtatgatcttcctgccttggccccctgagtagctgggactacaCCGTGGCAGGCTTATA a score=300.0 s hg17.chr17_random 1951536 1 + 2618010 C s panTro1.chr19 81207865 1 + 82489036 C s mm5.chr11 120270307 1 + 121648857 C a score=393.0 s hg17.chr17_random 1951537 7 + 2618010 CTGTGTT s panTro1.chr19 81207866 7 + 82489036 CTATTTT s mm5.chr11 120270308 7 + 121648857 ATGACTT s rn3.chr10 110003519 7 + 110733352 CGACTTT a score=7625.0 s hg17.chr17_random 1951544 34 + 2618010 GGTGCCTAAACGTTCTAGCTCTGCAGACTCAATT s panTro1.chr19 81207873 34 + 82489036 GGTGCCTAAATGTTCTAGCTCTGCAGACTCAATT s mm5.chr11 120270315 34 + 121648857 TGAGCTTAGGTGCTTTCGTATTCCGTACTAACTC s rn3.chr10 110003526 31 + 110733352 AATGCTCAAGTGCTGTAGTGTTACATACTAA--- s canFam1.chr18 30393404 33 + 66173745 GGTGCCTAGATG-GGTAGCTGTGCAGACTGAGTG a score=7993.0 s hg17.chr17_random 1951578 41 + 2618010 TAGCCA---GTCGTCCTGTTCCC-TCCGCCGCAGGCTCTGCTGCC s panTro1.chr19 81207907 42 + 82489036 TAGCCA---GTCGTCCTGTTCCCCTCCACCGCAGGCTTTGCTGCC s mm5.chr11 120270349 39 + 121648857 CAG------GTCATCCTCTTCCCTCAGGTCACAGGCTCTGTTGTC s rn3.chr10 110003557 43 + 110733352 TAGGTA--CGTAATCCTCTTCCCTCAGGTCACAGACTCTGCTGTC s canFam1.chr18 30393437 40 + 66173745 TGGCCCGGCGATGTCTCCTCCCC-----CTGTAGGCTCCGCGGCC s fr1.chrUn 128684434 29 + 349519338 TAACCA---GTTATTCTTATTCCTT---CCAGGGG---------- a score=169074.0 s hg17.chr17_random 1951619 115 + 2618010 ATGAAGGTGAAGATTAAGTGCT-GGAACGGCGTGGCCACTTGG-CTCTGGGTGGCCAACGATGAGAACTGTGGCATCTGCAGGATGGCATTTAACGGATGCTGCCCTGACTGTGAGT s panTro1.chr19 81207949 115 + 82489036 ATGAAGGTGAAGATTAAGTGCT-GGAACGGCGTGGCCACTTGG-CTCTGGGTGGCCAACGATGAGAACTGTGGCATCTGCAGGATGGCATTTAACGGCTGCTGCCCTGACTGTGAGT s mm5.chr11 120270388 115 + 121648857 ATGAAGGTGAAAATTAAATGTT-GGAATGGTGTGGCCACTTGG-CTCTGGGTAGCCAATGATGAGAACTGCGGCATCTGCAGGATGGCGTTTAATGGCTGCTGTCCAGACTGTAAGT s rn3.chr10 110003600 115 + 110733352 ATGAAGGTGAAAATTAAGTGTT-GGAATGGTGTGGCCACTTGG-CTCTGGGTAGCCAATGATGAGAACTGCGGCATCTGCAGGATGGCGTTCAATGGCTGCTGTCCAGACTGTAAGT s canFam1.chr18 30393477 115 + 66173745 ATGAAGGTGAAGATCAAGTGCT-GGAACGGCGTGGCTACTTGG-CTCTGGGTGGCCAACGACGAGAACTGTGGCATCTGCCGGATGGCCTTTAATGGCTGCTGCCCAGACTGTGAGT s fr1.chrUn 128684463 117 + 349519338 ATGAAGGTTAAGATCCGACATTGGGAACGGAGTGGCCTCTTGGAACCTGGGTGGCCAATGATGAAAACTGTGGAATCTGCAGGATGCCCTTCAATGGCTGTTGTCCAGACTGTGAGT s danRer1.chrUn 321061219 115 - 367113659 ATGAAGGTTAAAATAAAGCAGT-GGAACGGTGTGGCATCCTGG-TTATGGGTGGCCAATGATGAAAATTGCGGCATCTGTCGGGCATCTTTCAATGGTTGCTGCCCAGACTGTGGGT a score=1230.0 s hg17.chr17_random 1951734 4 + 2618010 GTCC s panTro1.chr19 81208064 4 + 82489036 GTCC s mm5.chr11 120270503 4 + 121648857 GTCT s rn3.chr10 110003715 4 + 110733352 GGCT s canFam1.chr18 30393592 4 + 66173745 GTGC s danRer1.chrUn 321061334 4 - 367113659 AACC a score=-210.0 s hg17.chr17_random 1951738 3 + 2618010 CCT s panTro1.chr19 81208068 3 + 82489036 CCT s mm5.chr11 120270507 2 + 121648857 TC- s canFam1.chr18 30393596 3 + 66173745 CCT a score=-290.0 s hg17.chr17_random 1951741 14 + 2618010 CCATGCTGTCTGAG s canFam1.chr18 30393599 1 + 66173745 -------------G a score=2524.0 s hg17.chr17_random 1951741 7 + 2618010 CCATGCT s panTro1.chr19 81208071 7 + 82489036 CCATGCT s mm5.chr11 120270509 7 + 121648857 CTATGCG s rn3.chr10 110003719 7 + 110733352 CTGTGCT a score=1119.0 s hg17.chr17_random 1951748 7 + 2618010 GTCTGAG s panTro1.chr19 81208078 7 + 82489036 GTCTGAG s mm5.chr11 120270516 7 + 121648857 CTCTCAG a score=11946.0 s hg17.chr17_random 1951755 92 + 2618010 CGGCCCCGACTGTGAGTGTCCCCTCTGTGCTGTCTGCTGCCTGCTGGACTAGCCTCAGTAGCTCCTGTTAAATACCTGCACGAAATACCCAG s panTro1.chr19 81208085 92 + 82489036 CGGCTCCGACTGTGAGTGTCCCCTCTGTGCTGTCTGCTGCCTGCTGGACTAGCCTCAGTAGCTCCTGTTAAATACCTGCACGAAATACCCAG s canFam1.chr18 30393600 76 + 66173745 -TGCTCC----------CTCCCCCTCGAGCT-----TTGCCTGCGGGCCTGGCCAGGGCATCTCCTCGGAAACACCTGCGCAAGGTGCTTGG a score=58006.0 s hg17.chr17_random 1951847 642 + 2618010 tttcattttcttttttttttttttttttt------gagaccgagtttcgatcttgtttcccaggctggagtgcaatggcgcgatctcggcttgccgcaacctctgcctcccgggttcaaacggttctcctgcctcagccttccaagcagctgggattacaggcatgtgccaccatgctgggctaatttttttatttttagtagagacggggttttgccttgttggctaggctggccttgaactcctgacctcaggtgacctgcccgcttcagccttccaaagtgctgggattacaggtgtgagccactttgcctggccCACATTTTTATTTTCTTTTCTTTCttt-cttttctttttttttntttttttttttgaganggagtttcactcttgttgcccaggctggagtgcaatggcgcgatctcggctcactgcaacctccgcctcctgggctcaagcgattctcctgcctcagccttccaagtacctgggatcacaggcatgtgccactacacccggctaattttgtattttttagtagagacaggctttctccatgttaggctggtctcgaactgtcaacctcaggtgatccacccgcctcagcctcccaaagggatgggattacaggcgcgaaccaccgtgcccC s panTro1.chr19 81208177 647 + 82489036 TTTCAttttctttttttttttttttttttttttttgagaccgagtttcgatcttgtttcccaggctggagtgcaatggcacgatctcggcttgccgcaacctctgcctcccgggttcaaacggttctcctgcctcagccttccaagcagctgggattacaggcatgtgccaccatgctgggctaatttttttatttttagtagagacggggttttgctttgttggctaggctggccttgaactcctgacctcaggtgacctgcccacttcagccttccaaagtgctgggattacaggtgtgagccactttgcctggccCACAttttcattttcttttctttcttttcttttcttttctttt--ttttttttctgagatggagtttgactcttgttgcccaggctggagtgcaatggcgcgatctcggctcactgcaacgtccgcctcctgggctcaagcgattctcctgcctcagccttccgagtacctgggatcacaggcatgtgccactacacccggctaattttgtattttttagtagagacaggctttctccatgttaggctggtctcgaactgtcaacctcaggtgatccacccgcctcagcctcccaaagggatgggattacaggcgcgaaccactgtgcccC a score=13708.0 s hg17.chr17_random 1952489 90 + 2618010 C-CCCAACATTTTCATTTTCATCTCATGAAGAAAAGTTGATAGAAAAAAAGCCAGGTGGTTGGTACCCATNGTTTATATAAAGATCCTGTC s panTro1.chr19 81208824 90 + 82489036 CACCCAACATTTTCATTTTCATCTCATGAAGAAAAGTTGATAGAAAAAAAGCCAGGTGGTTGGTACCCAT-GTTTATATAAAGATCCTGTC s rn3.chr10 110004291 89 + 110733352 -ACCGTGGGTTTTAGCTTCCATTTCCTGAAGGAAAGTTGGCAGAAGAGAAGCAGAATACTTCAAGCCCAC-GTTTGTCTAAAGATCCCATC a score=93219.0 s hg17.chr17_random 1952579 1003 + 2618010 ACAGACTCCATAGGATGAAACTCAGCTGTGAAATACGTGGGATTAAAAAGAGATTANAGTCTGGGCGGGCAGATCACAAGGTCAAGAGATGGAGGCCggcatggcggcccacgcctgttattccagcactgtgggaggccgaggcgggcggatcacaaggtcaagagatggaggccggcacggtggctcacacctgtcatcctagcactgtgggaggccaaggtaggcagatcacagggtcaagagatcaaggcagggtgtggtggcccacacttgtcatcccagcactgtgggaggctgaagtggatggatctcaaggtcaggagattgagaccatcctggccaacatagtgaaacgccatctntactaaaaatacaaaaattagctgggtgtgtggcgtgtgcctgtaatcccagctactggggaggctgangcaggagaatctcttgagcctgggagacgggggttgcagtgagccaagagcaagactccntctcaaaaaacaaacaaaaaaaagaTTAGTTTAAACTTTTTATTTGAAAATTCTCAAAATTGAATGGCATAggccaggcgcagtggctcacacctgtaatcccaccactttgggaggccaaggcaggcggattgcttcaggccaggtgttcgagaccagcctggccaacatggcaaaaccccgactctactaaaaatccaaaaaAATTagccgggcatggtggcaggtgcctgtaatcccagcactttgggaggccgaggtggatggatcacctgaggtcaggagtttgagaccagcctggccaacatggtaaaatcccgtctctactaaaaatacaaaaaagtagccgggcatggtggtgcatgcctgtaatcccagctactcaggaggctgaggcaaaagaatcgcttgaacctgggaggcagatgttgtggtgagccaagatcgcaccattgcactccagcctgggcaacaagagtgaaactccatctcaaaaaaaaagaaaaaaa s panTro1.chr19 81208914 1003 + 82489036 ACAGACTCCATAGGATGAAACTCAGCTGTGAAATACGTGGGATTAAAAAGAGATTAGAGTCTGGGCGGGAGGATCACAAGGTCAAGAGATGGAGgccggcatggtggcccacgcctgttattccagcactgtgggaggccgaggcgggcggatcacaaggtcaagagatggaggccggcacggtggctcacacctgtcatcctagcactgtgggaggccaaggtaggcagatcacagggtcaagagatcaaggcagggtatggtggcccacacttgtcatcccagcactgtgggaggctgaagtggatggatctcaaggtcaggagattgagaccatcctggccaacgtagtgaaacgccatctctactaaaaatacaaaaattagctgggtgtgtggtgtgtgcctgtaatcccagctactggggaggctgaggcaggagaatctcttgagcctgggagacgggggttgcagtgagccaagaGCAAGACTCCATCTCAAAAAACAAACAAACAAAAGATTAGTTTAAACTTTTTATTTGAAAATTCTCAAAATTGAATGGCATAggccaggcgcagtggctcacacctgtaatcccaccactttgggaggccaaggcaggcggattgcttcaggccaggtgttcgagaccagcctggccaacatggcaaaaccccgactctactaaaaatcaaaaaAAATTagccgggcatggtggcaggtgcctgtaatcccagcactttgggaggccgaggcggacagatcacctaaggtcaggagtttgagaccagcctggccaacatggtaaaatcctgtctctactaaaaatacaaaaaagtagccgggcatggtggtgcatgcctgtaatcccagctactcaggaggctgaggcaaaagaatcgcttgaacctgggaggcagatgttgtggtgagccaagatcgcaccattgcactccagcctgggcaacaagagtgaaactccatctcaaaaaaaaagaaaaaaa a score=34892.0 s hg17.chr17_random 1953582 250 + 2618010 GTGGAAATGTTTGA-------------------------------TTATGTTTAGGTTGAAAGCAGAGTTTTGCATCAGCGAAATG-GTTTTTCATGAGACCGAAATGAGCGTAAAGCAGAAGCAAGGGTCAAGGTTTTGCCCAGGGAGGACAAGAAGAACTCCCCAGAGGACAGTGGGGAATGGAGAGGACAGTGGGGAATGGGGAGGACCGAGAAGCTACTCACTACCCCAAGTAACCAGGCGTATTTTTGTAGGGCCAGGTGCATGCCCATATTGATTg s panTro1.chr19 81209917 250 + 82489036 GTGGAAATGTTTGA-------------------------------TTATGTTTAGGTTGAAAGCAGAGTTTTCCATCAGCGAAATG-GTTTTTCATGAGACCAAAATGAGCGTAAAGCAGAAGCAAGGGTCAAGGTTTTGCCCAGGGAGGACAAGAAGAACTCCCCAGAGGACAGTGGGGAATGGAGAGGACAGTGGGGAATGGGGAGGACCGAGAAGCTACTCACTACCCCAAGTAACCAGGCGTATTTTTGTAGGGCCAGGTGCATGCCCATATTGATTg s canFam1.chr18 30394284 249 + 66173745 GTAGAAATGCTTGAGTGTATTTTCTTTTTTTATTTTTGCTTGAGTGTATTTTTAAGTCAAAAACAGGCTTTTGCATCAGCGAATTGTGTTTTTAGCCAAACCAAAGTGAACTT-AAGCAGAAGC--------AGGTTGACCCTTGGGGGGAC-AGGGGCAGTCCCAAGAGGAAAAT--------------------GAGACCTGGGGGGACTGAGGGGCCCCTCTGGCCTGTAAGTGACCAGGC---TTTTTGTGGGGTCAGGAGAGCGCCCAGAATAACCG a score=64946.0 s hg17.chr17_random 1953832 762 + 2618010 acagggtctcactgtgttgcccaagctggacgtgaactccntgggctccagccatcctactgtctcagcctcccaagntagcATACCACCACACTCATCTGCCTCCTTTGCttttttttttttttttttttttttttttttttganananagtcttgccctgttgctcanactggagtgcaatggcaccatctcagctcaccgcaacccccacccttntgagttcaaaggattctccggcctcagcctcccaagtagctgggattacaggcatgcaccaccacagccagctaatttgntgnatttttatttttatttatttatttattttcgagacagagtctcactctgtcaccagggctggagtgcagtggcacgatcttggctcactgcaacttccgcctccctagttcaagtgattctccntgcctcagctttccgaatagctgggactacaggcgctcgccgccatgcccagctaatttttgtagttttaacagaaatggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccgcccacctcagcctcccaaagtgctgggattacaggcatgagccactgcgcccagcccttgttgtatttttagcagagacagggtttcaccatgttggccgggctggtcttaaaactcctgacctcaggtgatccgtccacctcggcctcccaaangntnaccaggattacaggtgtgagccactgcacccngccCCTNGTCTTTGC s panTro1.chr19 81210167 749 + 82489036 acagggtctcactgtgttgcccaagctggacgtgaactcc-tgggctccagccatcctactgtctcagcctcccaag-tagcATACCACCACACTCATCTGCCTCCTTTGCttttttttttttttttttttttttttt-----gagatagagtcttgccctgttgctcaggctggagtgcagtggcactatctcagctcaccgcaacccccacccttctgagttcaaaggattctccggcctcagcctcccaagtagctgggattacaggcatgcaccaccacagccagctaatttgttgtatttttatttttatttatttatttattttcgagacagagtctgactctgtcaccagggctggagtgcagtggcacgatcttggctcactgcaacctccgcctccctagttcaagtgattctcc-tgcctcagctttccgaatagctgggactacaggcactcgccaccatgcccagctaattcttgtagttttaacagaaatggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatctgcccacctcagcctcccaaagtgctgggattacaggcatgagccactgcgcccagcccttgttgtatttttagcagagacagggtttcaccatgttggccaggctggtcttaaaactcctgacctcaggtgatccgtccacctcggcctcccaaag---taccgggattacaggtgtgacccactgcaccc-gcccCT-GTCTTTGC a score=6699.0 s hg17.chr17_random 1954594 33 + 2618010 TTCTTAAGGTGAAATTGAGATGACTGAATCTTA s panTro1.chr19 81210916 33 + 82489036 TTCTTAAGGTGAAATTGAGATGACTGAATCTTA s canFam1.chr18 30394539 33 + 66173745 TTCTTACAGTGAAATTCAAATTATTGAGTTTTA a score=38913.0 s hg17.chr17_random 1954627 443 + 2618010 GTACAAtttttttttttt--gagacagggtcttgctgtcacccaggcggcagtgcagtgtggcaaaatcatagctcactgtagccttcaattncctcagctcaagtgatcctcccacctccancctctcaagtagctgggaccacaggcatgctccacaatgcctggctaattttttatttttttattttttgtagagacagggttttgctatgttgccaaggcntagtcttgaactcctgggctcaagggatctgcctgccttggcataccaaagtgctgggattacagacgtgagccaccatgcctgAACAAAACTACATAaatttttaattttttttgtggaaatggagtctcactatgtttcccaggctggtctcaaactcttggctctgtcctgccacagcctcccaaagtgctgggattataggtgtggcgcctggccC s panTro1.chr19 81210949 440 + 82489036 GTACAAttttttttttttttgagacagggtcttgctgtcacccaggcggcagtgcagtg--gcaaaatcatagctcactgtagccttcaatt-cctcagctcaagtgatcctcccacctcca-cctctcaagtagctgggaccacaggcatgctccacaatgcctggctaattttttatttttttattttttgtagagacagggttttgctatgttgccaaagc-tagtcttgaactcctgggctcaagggatctgcctgccttggcataccaaagtgccgggattacagacgtgagccaccatgcctgAACAAAACTACATAaatttttaattttttttgtggaaatggagtctcactatgtttcccaggctggtctcaaactcttggctctgtcctgccacagcctcccaaagtgctgggattataggtgtgGTGCCTGGCCA a score=38238.0 s hg17.chr17_random 1955070 300 + 2618010 GTACAAATACT-TTTTATTCTAGGCTTAACNTTTTACATTGGCCCTAGCTAAATAGAAATCTCATCACTCAGGAATTA----ATCCTCATTTAATCAAACNGGGTAGNGGTGTAATCTTAGGAAATTATTGATTGACTCTACNCTGATTGGATTTGTAGTTAATAGCTAATTAGNGTTAATAACTAAATTCACAAGGCACAGTTTTATTTGATCTCTTTTAAAT-TGCTCTTAAGGATGTAACAAAGAGTGCGTGGGATGCCCTGAGGGCAGGCATTCGACTTCTGGAGCAGCAGC---TTAACTTCTG s panTro1.chr19 81211389 295 + 82489036 GTACAAATACT-TTTTATTCTAGGCTTAAC-TTTTACATTGGCCCTAGCTAAATAGAAATCTCATCACTCAGGAATTA----ATCCTCATTTAATCAAAC-GGGTAG-GGTGTAATCTTAGGAAATTATTGATTGACTCTAC-CTGATTGGATTTGTAGTTAATAGCTAATTAG-GTTAATAACTAAATTCACAAGGCACAGTTTTATTTGATCTCTTTTAAAT-TGCTCTTAAGGATGTAACAAAGAGTGCGTGGGATGCCCTGAGGGCAGGCATTCGACTTCTGGAGCAGCAGC---TTAACTTCTG s canFam1.chr18 30394572 289 + 66173745 GTGCAAATACTATTTTGTTATGGCCTTGAT-CTTTACTTTGGCC------GAGAGAAAATCTCATCTCCCAGGACTTAATCCATCCTGATTGAATCAGTC-AGGTGG-GATGTGACCGTAGGAAGTCACTGATTGGCTCTAC-TTGATTAAGTTT-TACTTAGCAGTAAA-----GCTCACGATCTGGTTTTACTGATTCTGTTTTA----ATCACTCTCAGGTGCGTCCTTAGGGACACAGCAGAGGCAGTGGGAGCCTGCAGGGGCGCACACTTGCAGCTTCTTGAGCCACAGATTGTTAGCTTCTG a score=3365.0 s hg17.chr17_random 1955370 43 + 2618010 AAATTCCTCCNGAACCATGTGTCCACACCTCGTCTGGCTGCAT s panTro1.chr19 81211684 42 + 82489036 AAATTCCTCC-GAACCATGTGTCCACACCTCGTCTGGCTGGAT a score=12394.0 s hg17.chr17_random 1955413 114 + 2618010 CCGTGGGCCAGATGTGGGTG-GTGAATCCTGTGGATTAGAGGTGGTGCTAGGTAGCCCCCAAGTGACTGCAGTGGTGGGTCCACAGGCAGCCTGCAGAGCCCGCCCTGCAGCATG s panTro1.chr19 81211726 114 + 82489036 CCGTGGGCCAGATGTGGGTG-GTGAATCCTGTGGATTAGAGGTGGTGCTAGGTAGCCCCCAAGTGACTGCAGTGGTGGGTCCACAGGCAGCCTGCAGAGCCCGGCCTGCAGCATG s canFam1.chr18 30394886 75 + 66173745 CCCTAGACTGGACGTGGGAGCGTGAG--CGGTGTGTTGGCGTTGGCGC--------------------------------------GGAGCCTGCGGAGCCCAGCTTGTGCCGTT a score=1671.0 s hg17.chr17_random 1955527 4 + 2618010 CCAG s panTro1.chr19 81211840 4 + 82489036 CCAG s rn3.chr10 110009271 4 + 110733352 CCAG s canFam1.chr18 30394961 4 + 66173745 GCAG a score=98567.0 s hg17.chr17_random 1955531 564 + 2618010 CTGGGCCTGTGAT----GGGGCATCCAGA---------GGGTGTTGCCCTGAACACTCAGCATGTCTCCGCTGACACAGTGTG----------CTCAGGCTTTGTTAACATGGGGCCTGTTGGCTGCAGAGACTCAGGAGTTGAG--AGTCTAATTTTTGGACCTGCTGATGGTTAAGTCATAGTGAGTCAGTGTTAACGCGCAAAGCGTTTGACGAGTCCAATGNTGCTTCC---ATAC--TAAGCAGCACCAGGTTTCTTTT--GCTAAAATTGAACTCCTGTGAAAAATTCAGAGTGACTAAGTTCATTCAACAAAGACCGTGGGAGCCCGAGGCTGGTAAACAATGAGTCCATCCCGCATCCCAGGGGACTCTGGTGGCAGTGCAGTTTTGCCGAGAGGAGTTTTAATTTA-AAAAAATGCAATCAGGAGACCAGCAGGTCCTGGAATGAGTCACC-CTCAGTGCATCTG-------------CGGACTCATCAGACACCCCAGGC---CGGCTTCGGGTGGGGAATGCACTAGAACGAAGTGACACCTTTG--ACTAAACNGAGGCCTCCCCC-----GAGTACTCAGA-GTGGCCCAGACCC------CTCTCCTCAGGGGG s panTro1.chr19 81211844 562 + 82489036 CTGGGCCTGTGAT----GGGGCATCCAGA---------GGGTGTTGCTCTGAACACTCAGCATGTCTCCGCTGACACAGTGTG----------CTCAGGCTTTGTTAACATGGGGCCTGTTGGCTGCAGAGACTCAGGAGTTGAG--AGTCTAATTTTTGGACCTGCTGATGGTTAAGTCATAGTGAGTCAGTGTTAACGCGCAAAGCGTTTGACGAGTCCAATG-TGCTTCC---ATGC--TAAGCAGCACCAGGTTTCTTTT--GCTAAAATTGAACTCCTGTGAAAAATTCAGAGTGACTAAGTTCATTCAACAAAGACTGTGGGAGCCCGAGGCTGGTAAACAATGAGTCCATCCCGCATCCCAGGGGACTCTGGTGGCAGTGCAGTTTTGCCGAGAGGAGTTTTAATTTA-AAAAAATGCAATCAGGAGACCAGCAGGTCCTGGAATGAGTCACC-CTCAGTGCATCTG-------------CGGACTCATCAGACACCCCAGGC---CGGCTTCGGGTGGGGAATGCACTAGAACGAAGTGGCACCTTTG--ACTAAAC-GAGGCCTCCCCC-----GAGTACTCAGA-GTGGCCCAGACCC------CTCTCCTCAGGGGG s mm5.chr11 120274056 510 + 121648857 CTAGGTCTGTGAC----AGAAGGGATGGA---------TGGTGG----CTAAGCACTTAG--TGTCTC----------GTGTG-TGAAGACGACTCAGGCTCTCTTAACA--GGGCTTGATAACTGTGCAGAGTGGGAAACTTAGTCCAGCCAACTCACGGATGTAC------TTGAATGAGAGGGAGTCAGTTTTAATGTG-ACAGTGTTGGTCAGGTCTAGTG-TGTTTTCTGGATGCAGTCTATAGCACCAGATTTCTCACAGGTTAAAATTAAGTTACTAAGTGAAA---------ATTAAGTT------ACTAAGACC---------------------ATAATAAATCCAATCCAGGACCCAGGGGGCTTTAG-GGTACAACAGTCTCGTCAAGAAG-TTTTTAATTAA-AAATAATTCCATCAAGGCACTCGCAAGTCCTTGTATGAATCACC-CTCAGTGCACCGG-------------AGCACTCACTGGGGACTCCAGCTTG-CGGCCT----------------------GAAGGGACATCTTGAGCACAAGAC-AATATCTTCCTCCGCATGACTACCCACA-GGGGACGACAGCTCAGTAGCCCCTGTTGGTGAG s rn3.chr10 110009275 489 + 110733352 CTAGGTCTGTGACAAAAGGGATGTCCAGAAAGCATCTTAGGTGG----CTGCGCATTTAG--TGTCTC----------GCATGTTGCAGAAGACTCGGG------------------------CTGTGCAGAGTGGGAAACTTAGTCCGTCCAACTCATGGATG---------TTAAATTAGAGGGGGTCAATTTTAATGTG-ACAGTGTTTGACAGTTCCAGTG-TGTTTTCTAGATGCATTCTATAGCACTAGCTTTCTCACAGAGTAAA-------TCCTGTGAAA-----------ATTAAGTT------ATGAAGACC---------------------ATAATAAATCTGTTCTAGGACCCTGGGGGCTTTAG-GGCACAACAGTCTTACGAAGAGG-CTTTTAATTAA-AAGTAATTCCATCAAGGCACTAGCAAGTCCTTGCATGAGTCACC-CTCAGCGCACCAG-------------CTCACTCATGGATGACTCCAGCTTG-CTGCCT---GCAGGGACATCTTGAGAACAAG-------------------AC-AGTATCTTCCTCCGAGTGATTACCCACACGGGGGCCAG--CTCAGTAACCCCTGTCAGTGAG s canFam1.chr18 30394965 465 + 66173745 CTGGGCCTGTGGC-------------------------TGGCAT----------ACC-----TGTGTTTGCCG-----GAGTG----------CTCAGGTCTTGTGGA-AGGGGACCCGTTGGCTG---AGAGTAGGGGGCTTGG--AGCCTCATCTTCAGA-------------------------GCCAATCCTACCGTGCAGAGTGTGTGACGAGCC------TTTATAC---AGGT--GAAGTGACACTGGGTTCCTCTT--GCTAAAATTGAGCTCTTGTGAAATAC--------CCTGAGTG------ACTAAGACT-----------------------AAT-AATCTGCTCCCAGGCCCAGAGGGCTTTGGGAGTA----AGTCTTCTCGAGAGGTGTTTTCTTTACTAAAGATTTCCATCGAGAGGCAAACAAGCCCTTGGGTGAGTCACCGCTTTGTGCTCCCGTGTTCTGTGCTCCCGTGTTCGTCACATGCCTCGGGTGGCCTGCCT---GCAGGTAGCATTACTG---GAAGTGGCTCCTTCT--CCTAA---CAAACCTCCCTCAGAGGGACCA-----A-GTGGCCTGGGTAC-----AACCCCATCAGTGGG a score=23554.0 s hg17.chr17_random 1956095 74 + 2618010 CTAGCAGGCTTCAGCTCTCATTTGAAAGGGCCGATATCAAGCAGAGTTGTGC-TGAGGCCAGAAACCCCCACGGG s panTro1.chr19 81212406 74 + 82489036 CTAGCAGGCTTCAGCTCTCATTTGAAAGGGCCGATATCAAGCAGAGTTGTGC-TGAGGCCAGAAACCCCCACGGG s mm5.chr11 120274566 75 + 121648857 CTAGTGGGATCCAAGTCTAATTGGAAGGGGGTGATTTCAAGCAGAGTTCTGCTTGAAGTTAGGAGCCACCGGTGG s rn3.chr10 110009764 74 + 110733352 CTAGTGGGGTCCACGTCTAACTGGAAGAGAGTGTCTTCAAGCAGAGTTCTGC-TGAAGTTAGCAGCCACCAGTGG a score=367.0 s hg17.chr17_random 1956169 3 + 2618010 CAG s panTro1.chr19 81212480 3 + 82489036 CAG s rn3.chr10 110009838 3 + 110733352 TGG a score=2498.0 s hg17.chr17_random 1956172 31 + 2618010 GTCCTCCCAGGGNCTGGGAGTGGGCATGCCG s panTro1.chr19 81212483 30 + 82489036 GTCCTCCCAGGG-CTGGGAGTGGGCATGCCG a score=23878.0 s hg17.chr17_random 1956203 225 + 2618010 TGGGGCCGGCGCTGCCAGGACAGGAGGGTGGCCACGAGCTCCAGCTCCNACAATGCC-AGGCCGACCCTGCCGTNGGGGCTGGGGCTGGGACTTGCTGTGCTCTGTTGGCAGNCAGCTGTTCCTCAGGGNGTTTCCAGGCTCTTGGAGATCAGGGACACTCATTTNCTCTTGATCATGGCTGATACAAGCATCCCTCTCTGTGTCAGGTCCTCTCCATGGAGAAAG s panTro1.chr19 81212513 220 + 82489036 TGGGGCCGGCGCCGCCAGGACAGGAGGGTGGCCACGAGCTCCAGCTCC-ACAATGCC-AGGCCGACCCTGCCGT-GGGGCTGGGGCTGGGACTTGCTGTGCTCTGCTGGCAG-CAGCTGTTCCTC-GGGGGTTTCCAGGCTCTTGGAGATCAGGGACACTCATTT-CTCTTGATCATGGCTGATATAAGCATCCCTCTCTGTGTCAGGCCCTCTCCATGGAGAAAG s canFam1.chr18 30396387 199 + 66173745 TGGGGGTGACACC-CCAGGAAAGGTGGA-GGCGGCAAGCCACAGCACC-TCCATGCCGACGGGGACCCTGACAC-GGGGCCTGAG--GGAGGTCGTTATGCTCTGTTGGCGC-CAGCTGTTTGAT-GGGATGTTCTTGG-TTTTGGAAGT--------CTTGTTT-CTTGTGGTTGCGGGCAGCGTGGATGTCCC---CTGTAGCCG------TCCACGGAGGTCG a score=4616.0 s hg17.chr17_random 1956428 70 + 2618010 CATTTCTAGGTGTTTGGGCT--GGTGCCCGCAGCCTGTG-CCT-GTCCTGGGAGG------------CAGGGCCCA----------------TCCA------------------------------------------------CAGGTG s panTro1.chr19 81212733 70 + 82489036 CATTTCTAGGTGTTTGGGCT--GGTGCCCGCAGCCTGTG-CCT-GTCCTGGGAGG------------CAGGGCCCA----------------TGCA------------------------------------------------CAGGTG s rn3.chr10 110010539 96 + 110733352 CATCTCCAAGCCTGTAG-----AGGGCCTGTGGCCTGGGCCCT-GGCTTTGGACGGAAGTAGGAGTTGAGGGTTCAGGTAAAGAAGAGAAGGTTAA------------------------------------------------CAGATG s canFam1.chr18 30396586 122 + 66173745 TATTTCCAGGCACATGGAGTGGAGTGTGAGCAGCATGAGCCCTGGGCCTTGGTGG------------TGGGGCCCC----------------TTCAGGCCAGAAATGGGAGAGGTGGGAGGTCACACCTGCTCGCTGGCTGCTCCGGGTG a score=24454.0 s hg17.chr17_random 1956498 214 + 2618010 --CCCATCAACA----------------CAGCTTCCCCAACGCCTGGGCAGCACACCGGATCCCTGATGTCTAGGGAAGAGTC-TTCTAGNGTCCCCAGACCCCACCCCTCCNTGCCCTTGATCNAAGA-GACCAGTTCACTACTCAGAT-------GCACGTCTCCTTGGTG-----------------------------------CCTTGACCATTCATGTGACCTTTTTGGCATCACAGATC-----AAGTGTCTGCAGATGGGCCCAGGGCCT-GTA s panTro1.chr19 81212803 211 + 82489036 --CCCATCAACA----------------CAGCGTCCCCAACACCTGGGCAGCACACCGGATCCCTGATGTCTAGGGAAGAGTC-TTCTAG-GTCCCCAGACCCCACCCCTCC-TGCCCTTGATC-AAGA-GACCAGTTCACTACTCAGAT-------GCACGTCTCCTTGGTG-----------------------------------CCTTGACCATTCATGTGACCTTTTTGGCATCACAGATC-----AAGTGTCTGCAGATGGGCCCAGGGCCT-GTA s mm5.chr11 120275976 183 + 121648857 --CCCATAAACA---------------CCAGTGTCCCCAAGATCC--ATAGTGCAGTAGATCTCTGATGTCCAGGGAAGAGACTTTCCAG-GTTTCAGGA-------------TGCCTGTAATG-AAGACAAAGAGTTCTCCACTCAGGC--------TGTGAGTCGTTGGTA---------------------------------------------TTACGGGTCAGTTTT----TCACAG--------AAAGGTGTGAGAAAGGGACCAGAACCTAGTG s rn3.chr10 110010644 212 + 110733352 --CCCACTAGTAACTGTCCCAGAAACACCTATGTCCCCAAGGTCT--GCAGTGCAGTACATCTCTGATGTCTAGGAAAGGAGCTTTCTAA-GTTCCAGGA-------------TGTCTGCAATG-AAGA--CAGAGTTCTCCACTCAGGCTGTGACTTTTCGGCTCTTCAGCA-----------------------------------CTTTGGTCATTAATGCTGCCTTT------CCGTAG--------AAAGGTGTGAGAGGGGGACCGGAAACCAGTG s canFam1.chr18 30396708 235 + 66173745 GGGCCACAAGCG----------------CCACTCCCTT---------GTCTCGTGCTCAGTCTCTGCCACCTGGGAGAGAAAC---CTCA-GCCCCAGGGCCCCAGCTGTCC-TTCCCTTGAGC-AAAAGAAATAGTTCTCTCTTCAGAT--------AGCAGCTCTTGGGCACGGGTGTGGGGGGTGGGGGTAGGGGGCTGGCTGCGCCTAGCACATTCGTGCTGTACCTCCCGTGTTGCAGGTTCAGTGGTGGGTTTGCAGCTGGGCCTGCA-------- a score=0.0 s hg17.chr17_random 1956712 22 + 2618010 GGTCAGACATTGNCCNCTTTTT a score=1267.0 s hg17.chr17_random 1956712 3 + 2618010 GGT s panTro1.chr19 81213014 3 + 82489036 GGT s mm5.chr11 120276159 3 + 121648857 GGC s rn3.chr10 110010856 3 + 110733352 GGC a score=1202.0 s hg17.chr17_random 1956715 5 + 2618010 CAGAC s panTro1.chr19 81213017 5 + 82489036 CAGAC s mm5.chr11 120276162 5 + 121648857 CAGGC a score=0.0 s hg17.chr17_random 1956715 19 + 2618010 CAGACATTGNCCNCTTTTT a score=468.0 s hg17.chr17_random 1956720 14 + 2618010 ATTGNCCNCTTTTT s panTro1.chr19 81213022 12 + 82489036 ATTG--CTCTTTTT a score=2189.0 s hg17.chr17_random 1956734 29 + 2618010 CCCCAGCCTCAAGCACAGGGGACACAGGG--- s panTro1.chr19 81213034 29 + 82489036 CCCCAGCCTCAAGCACAGGGGACACAGGG--- s canFam1.chr18 30396943 27 + 66173745 CCCCGGGCGGGGGCGGGGAGG-----GGGATG a score=-315.0 s hg17.chr17_random 1956734 29 + 2618010 CCCCAGCCTCAAGCACAGGGGACACAGGG--- s canFam1.chr18 30396943 27 + 66173745 CCCCGGGCGGGGGCGGGGAGG-----GGGATG a score=1146.0 s hg17.chr17_random 1956763 2 + 2618010 TG s panTro1.chr19 81213063 2 + 82489036 TG s rn3.chr10 110010859 2 + 110733352 TG s canFam1.chr18 30396970 2 + 66173745 TG a score=3835.0 s hg17.chr17_random 1956765 24 + 2618010 GGCTAGGCCAGAGCGCCACCTCCT s panTro1.chr19 81213065 24 + 82489036 GGCTAGGCCAGAGCGCCACCTCCT s mm5.chr11 53172616 24 - 121648857 GGCCAGGGTAAGGAGTTAACTCTG s rn3.chr10 110010861 10 + 110733352 GGCTGGGCTG-------------- s canFam1.chr18 30396972 22 + 66173745 GGCTGGGC--GAGAACCGCCCCCT a score=0.0 s hg17.chr17_random 1956789 44 + 2618010 CAGAGAGGCCCCTGGGCTCCCCACTGAGCATGATGAGCCTGGGT a score=4853.0 s hg17.chr17_random 1956789 32 + 2618010 CAGAGAGGCCCCTGGGCTCCCCACTGAGCATG s panTro1.chr19 81213089 28 + 82489036 C----AGGCCCCTGGGCTCCCCACTGAGCATG s mm5.chr11 53172640 32 - 121648857 CAGAGACATGCCTGGGTTCCCACGTGAGGGTG s rn3.chr10 110010871 19 + 110733352 -------------GGTCTCCCCTCTGAGGACA a score=2139.0 s hg17.chr17_random 1956821 12 + 2618010 ATGAGCCTGGGT s panTro1.chr19 81213117 12 + 82489036 ATGAGCCTGGGT s mm5.chr11 53172672 12 - 121648857 GGGAGCCCTGGT a score=0.0 s hg17.chr17_random 1956821 12 + 2618010 ATGAGCCTGGGT a score=3444.0 s hg17.chr17_random 1956833 14 + 2618010 GAGGGGAGGCGCCT s panTro1.chr19 81213129 14 + 82489036 GAGGGGAGGCGCCT s mm5.chr11 53172684 14 - 121648857 GAGGGGTGGGGCCT s canFam1.chr18 30396994 14 + 66173745 GCAGTCAAGCACCC a score=314.0 s hg17.chr17_random 1956833 15 + 2618010 GAGGGGAGGCGCCTG s canFam1.chr18 30396994 15 + 66173745 GCAGTCAAGCACCCG a score=100.0 s hg17.chr17_random 1956847 1 + 2618010 G s panTro1.chr19 81213143 1 + 82489036 G a score=1194.0 s hg17.chr17_random 1956848 77 + 2618010 CTGCGGTTGCC---CCGGGTGGAGGCCGCATGTCCGGTGTCCNCTTGGTCATTGCTGGNTCTTCGCCTGGGGGCGGGCTG s panTro1.chr19 81213144 75 + 82489036 CTGCGGTTGCC---CCAGGTGGAGGCCGCATGTCCGGTGTGC-CTTGGTCATTGCTGG-TCTTCGCCTGGGGGCGGGCTG s rn3.chr10 110010890 50 + 110733352 CTTTACTTGCC---TCTGAGGGA------------------------GTCACTGCAGATTTTTTATTCGAGGGCCAT--- s canFam1.chr18 30397009 36 + 66173745 ------TTGCAGGGCAGGGCGGA------------------------GCTGTTG--------------GGGGGCACGCTG a score=24246.0 s hg17.chr17_random 1956925 169 + 2618010 GTCAGGAGACCGATTGGGTAACACTCCTGA-TTTCGGCTTCTCTGAAA-------C-----ATGAGAGGCT-----GCAGTG--CTGGAGCCACTGCCCAGGGTCCCTACCT-GCACCCCTGCCTGGCTTGTCACATGCTCNTGTGTCCAGCCTGGTCAT---------GCCTGTCCTTTTCCCCA---------CCTCCCCTCCGNT s panTro1.chr19 81213219 167 + 82489036 GTCAGGAGACCGATTGGGTAACACGCCTGA-TTTCGGCTTCTCTGCAA-------C-----ATGAGAGGCT-----GCAGTG--CTGGAGCCACTGCCCAGGGTCCCTACCT-GCACCCCTGCCTGGCTTGTCACATGCTC-TGTGTCCAGCCTGGTCAT---------GCCTGTCCTTTTCCCCA---------CCTCCCCTCCG-T s mm5.chr11 120276236 171 + 121648857 GTCTGGGGATGATTTGGGTCACAGCCCTACTTTTTGTCTCCTCTGAGA-------------ATGAGAGGCTCTCTGCCAGTG-ATTAGAGCTGTTGACTAATGTCCCAG----AGGTGCCTGCCTGGCTTGTCACATGCTC-TGTGT--------GTTTT---------ATCTGGTTCTTTACCTAAGGCCAGTCTCTCCTTCTTG-C s rn3.chr10 110010940 171 + 110733352 GTCTGGGGAT-AATTGGGTAGCACTCCTACTCTTTGTCTCTTCTGATGTGGGAGGC-----CTGAGAGGCTCTCTGCCTGCGGACTAGAGCTGTTTACTAATGTCCCAG------AGGCCTGCCTGGCTTGTCACATGCTC-AGTGT--------GTCTTCTTCCTAAGGCCTGTCTGTC---------------TCCCCTTCTTG-C s canFam1.chr18 30397045 163 + 66173745 --CAGAG----CGTGTGCTCACACTCCTGGTTTCTGTCTTTCCTGAAA-------CACAAGGTGTGAGGCT--------GTGCACACGAGCC----CCCCGGGCAGCCGTCTGGCGCAGGTGCTTGACATCCTTGGGTCCT-GGTCCCCGGCTCCGTATG---------ACCTGCTGGTCCTCTCG---------TCCCCCTCCCG-C a score=238795.0 s hg17.chr17_random 1957094 151 + 2618010 AGGCAAGGTGCCCGGCGACGACTGCCCGCTGGTGTGGGGCCAGTGCTCCCACTGCTTCCACATGCATTGCATCCTCAAGTGGCTGCACGCACAGCAGGTGCAGCAGCACTGCCCCATGTGCCGCCAGGAATGGNAAGNTTCAAGGAGTGAG s panTro1.chr19 81213386 149 + 82489036 AGGCAAGGTGCCCGGCGACGACTGCCCGCTGGTGTGGGGCCAGTGCTCCCACTGCTTCCACATGCATTGCATCCTCAAGTGGCTGCACGCGCAGCAGGTGCAGCAGCACTGCCCCATGTGCCGCCAGGAATGGAA--GTTCAAGGAGTGAG s mm5.chr11 120276407 149 + 121648857 AGGTAAGGTGCCTGGTGATGACTGCCCCCTCGTGTGGGGACAGTGCTCCCACTGCTTCCACATGCACTGCATCCTCAAGTGGCTGAATGCGCAGCAGGTGCAGCAGCACTGCCCCATGTGTCGCCAGGAGTGGAA--GTTCAAAGAGTGAA s rn3.chr10 110011111 149 + 110733352 AGGTAAGGTGCCTGGTGACGACTGTCCCCTGGTGTGGGGACAGTGCTCTCACTGCTTCCATATGCACTGCATCCTCAAGTGGCTGAACGCACAGCAGGTGCAGCAGCACTGCCCCATGTGTCGACAGGAGTGGAA--GTTCAAAGAGTGAA s canFam1.chr18 30397208 149 + 66173745 AGGCAAGGTGCCGGGCGATGACTGCCCCCTGGTGTGGGGCCAGTGCTCCCACTGCTTCCACATGCACTGCATCCTCAAGTGGCTCAACGCGCAGCAGGTGCAGCAGCACTGTCCCATGTGCCGCCAGGAGTGGAA--GTTCAAGGAGTGAG s fr1.chrUn 128684868 149 + 349519338 AGGTAAAGTGCCTGGAGACGACTGCCCGCTGGTCTGGGGTCAGTGCTCCCACTGCTTTCACATGCACTGCATCTTGAAATGGCTGAACTCGCAGCAAGTGCAGCAGCAATGCCCCATGTGCAGACAGGAATGGAA--GTTTAAGGAGTGAG s danRer1.chrUn 321065556 149 - 367113659 AGGTAAGGTTCCAGGAGATGACTGTCCATTGGTCTGGGGTCAGTGTTCACACTGTTTCCACATGCACTGCATCCTGAAGTGGCTGAACTCTCAGCAAGTGCAGCAGCAGTGCCCGATGTGCCGTCAGGAGTGGAA--GTTTAAAGAGTGAG a score=0.0 s hg17.chr17_random 1957245 2 + 2618010 GC a score=2000.0 s hg17.chr17_random 1957245 2 + 2618010 GC s panTro1.chr19 81213535 2 + 82489036 GC s mm5.chr11 120276556 2 + 121648857 GC s rn3.chr10 110011260 2 + 110733352 GC s canFam1.chr18 30397357 2 + 66173745 GC a score=-22658.0 s hg17.chr17_random 1957247 34 + 2618010 CCG---------------------------------------------ACCTGGCTCTC----GCTGG---AGG-----------------------------------GGCATCCTGAGA s panTro1.chr19 81213537 34 + 82489036 CCG---------------------------------------------ACCTGGCTCTT----GCTGG---AGG-----------------------------------GGCATCCTGAGA s mm5.chr11 120276558 85 + 121648857 CCG------------------------TGCCGTGC------------CACTTCCCTCTCCTGTGCTGTGCCAGGCTCAGCCCCTTCCCTCCCTCCCCTCCCCCAGATACAGCACCCCAAGT s rn3.chr10 110011262 80 + 110733352 CTGCC-ATGCCCACTCCCTTCTCCCAGCGCTGTGCCAGGCTCAGCCCCACCTTTCCCTTCC--CCAGA---TAG-----------------------------------GGCATCCCGAGT s canFam1.chr18 30397359 45 + 66173745 CACCCTGTGCCAGC----------------------------------ACCCGCCCCACCCCCGCTGC---CCC-----------------------------------GCCACCCT---- s danRer1.chrUn 321065705 34 - 367113659 -------------------------------------------------CTTGCCTGTCAGGCAATAG---CAT-----------------------------------AATATCCTAAAA a score=100837.0 s hg17.chr17_random 1957281 323 + 2618010 CTCCTTCCT----CATGCTGGCGCCGATGG---------NCTGCTGGGGACAGCG-------CCCCTGAGCTGCAACAAGG------TGGAAACAAGGGCTGGAGCTGCGTTTG---------TTTTGCCATCACTATGT--TGACACTTTTATCCAATAAGTGAAAACTCATTAAACTACTCAAATCTTGCTGGAGGCCTCTGGGTGCCTGTGTTCTC-GGCATATAGATG-TGGTCTCNGGTGTGTTTTGATATGAAAACTCTCNATGAATAAACATCTCCGTGAAAC----GCCAAGGNCCCTCGTCAAACCCTGAGTCATGACT-----GGGAGGAGNAAGGAGCAGGATCAGACGG--------------TAGAGCCTGG s panTro1.chr19 81213571 318 + 82489036 CCCCTTCCT----CATGCTGGCGCCGATGG----------CTGCTGGGGACAGCG-------CCCCTGAGCTGCAACAAGG------TGGAAACAAGGGCTGGAGCTGCGTTTG---------TTTTGCCATCACTATGT--TGACACTTTTATCCAATAAGTGAAAACTCATTAAACTACTCAAATCTTGCTGGAGGCCTCTGGGTGCCTGTGTTCTC-GGCATATTGATG-TGGTCTC-GGTGTGTTTTGATATGAAAACTCTC-ATGAATAAACATCTCCGTGAAAC----GCCAAGG-CCCTCGTCAAACCCTGAGTCACGACT-----GGGAGGAG-AAGGAGCAGGATCAGACGG--------------TAGAGCCTGG s mm5.chr11 120276643 352 + 121648857 CCCCTCCACACAGCACAGTGGTGCCCAGAGATCTCGGTCTGTGCCGGGGACAAGGATGCTTTCTGTTTGGCTGGGACAAGG------TTGAAAGGAGCTTTGCTGACTGTTTTG---------TTTTCCCATCAC---AT--TGACAC-TTTATTCAATAAGT-AAAACTCATTACAGTTC-CGAGCCGTGCTGGAGGCCTCTGCTTGCCTGGTTTCTT-GACATACTGATGCTGCTAGC-AGCATGTTTTGCTATGAAAACTCC-----AATAAACAGCTTGATGAAATAATGGCCAAAA-CCTTCATCGTAATCTGAGTCACAGCTCAGACAGGAGGAG-GAGGAG-AGATTCAGGCAGAGCCAAGCTGGGCAAAGACCTTAG s rn3.chr10 110011342 364 + 110733352 CCCCTCCACACAGCTCAGGGGTGCCCAGGGACCCCATTCTGTGCTGGGGACAAGGATGCTTTCTGTTTGGCTGAGACGAGG------TGGAAACGAGGACTGGAGCTTTGCTGGGTGTTTTGTTTTTCCCATCAC---AT--TGACACTTTTATTAAATAAGT-AAAACTCATTAAAGTTC-TGAGCC--GCTGGAGGCCTCTGCTTGCCTGTTTTCCCTGACATATTGATG-CAGCTGC-AGCATGTTTTGCTGTGAACACACTC-ATAAATAAACAGTTTGGTAAAGTATCAGCCAAGA-CCTTCATCATAATCTGAGTCACAGCTCCGACAGGAAGAG-TGGAAG-AGACTCGGGCAGGGCCAAGCTGGGCAAAGACTTTAG s canFam1.chr18 30397404 281 + 66173745 ---CTTCCC-----------------------------------TGGCGACAGC--------CCCTCCGGTGGCAGTGGGGACACACTTGAAACAAGGACTGGAGCTGTATTTG---------TTTTTCT-TCAG---ATTGTGACACTTTTATCCAATAAGT-AAAACTCATTAAATTGTCTGAACCTTGCTGGAGGCCTCTGCTCGCCTGTTTTCTG-GTC---CCGATG-CAGCGTC-ACAGTGTCTTGATAGGAAAACTC---ATGAATAAACATCTCGATGCAAT----GCCACCA---------AGGCTCTGAGTCACAGCC------GCAGAAG-GAGCGG-ACGGTCAGCCGG--------------AAGAGCCTGG a score=-25552.0 s hg17.chr17_random 1957604 153 + 2618010 G---GCATGCTCTT----------CAGGCA---------------------TGCTCTTGCCTGC---TGGATTGCCGGCGGC--------------GGCCCTGGGA------CCCTCCCTCAGG-----------CTGG--------CTCTGAGGGACCCTG--------------GCTGTGCAAAG-----------CT-----GGCGGCCACTG-----------CTTGTGGC----------------------GCCTCC-AGACTGAAGGCCAC---------------------CATCTCTGAGTGGGC--------- s panTro1.chr19 81213889 153 + 82489036 G---GCGTGCTCTT----------CAGGCA---------------------TGCTCTTGCCTGC---TGGATTGCCGGCGGC--------------GGCCCTGGGA------CCCTCCCTCAGA-----------CTGG--------CTCTGAGGGACCCTG--------------GCTGTGCAAAG-----------CT-----GGCGGCCACTG-----------CTTGTGGC----------------------GCCTCC-AGACTGAAGGCCAC---------------------CATCTCTGAGTGGGC--------- s mm5.chr11 120276995 163 + 121648857 G---GTGTGTTTGTGTCAAGGAGACAGGCAGGGTGCACGTAGCCCATCAGCTGCCCTAGTCTAC---TGGG-------------------------AGTCCCGAGATCTCGTCCCATCCCCAG----------------------------------CCCTA--------------GCTGAGCAAAG-----------CT-----GGCAGCTGCT------------CTTCCAGA----------------------GCTATT-TGGTTGGAGGAAGA---------------------AATAGCTAAGCAGGC--------- s rn3.chr10 110011706 162 + 110733352 G---GTGTGTTTGTGT--------CAAGGG---------------------CCTAGCAGCCAGCACATAGCCCACCAGCTGCCCTAGTCTTCTGGGAGTCCCAGGATCTCTTCCCATCCTAC-----------------------------------CCCTA--------------GCTGAGCAAAG-----------CT-----GGATGCTGCT------------CCTCCAGA----------------------GCCACTGTGGTTAGAGGAAGA---------------------GGTAGCTAAGCAGGC--------- s canFam1.chr18 30397685 220 + 66173745 GGGCGAGTGACTGGCTCTGGGGGCTTGGAA---------------------------GGCCTGG---TGGT------GCAAG--------------GGCCCTGGGGCACGTGTATTTACTCAGGGGGCTGGCCTCCTGGTCTGCCACCTCTGTGGCACCCTACTTCGTGTCTGGACACTGCCCAGAGGGAAGAAAGCCCT-----GGGGACCATTA-----------CCTTT---------------------------CCCC-AGTCTGGAGGCCACATGCCCTGTGTCCAGACAGGGCACCTCTGTGCTGGT--------- s danRer1.chrNA 207959319 200 + 390413307 G---GCAAGCTAGC----------CAGGGG---------------------TACACCGATTTCC--CTGGACTTGCAGTATT--------------GGCCCCAGGATGCCCCCTGGCCCTCC-------------------------ACCTAAAAGCCCCTG--------------ACCCCAGCAAG-----------CTACCCAGGGGTCCACCGATGTCCCTGGACTTGCTGTGTAGGCCCCAGGGTGCCCCCTGGCCTTT-CACCTAGGGGCCTT---------------------TGACCCC-AGCAAGCTACCTAGGG a score=-10658.0 s hg17.chr17_random 1957757 167 + 2618010 GTCCATTGTTCTCACTGG---GACTGT-CTGCAGCGGG--GCTGGGCCTC---------CCACAG----TGTAGGGATCAGTG--TCCTGACACTGGGAAGT-------GTGTCCACACGTCTGAGGCTTCCCTTCCTAGG---GAAAGGTGGCCCNTGGGAGGCTCCTT-----------TGTGTGC-CTCTGC-TCCCCNACAATCGTG- s panTro1.chr19 81214042 165 + 82489036 GTCCATTGTTCTCACTGG---GACTGT-CTGCAGCGGG--GCTGGGCTTC---------CCACAG----TGTAGGGATCAGTG--TCCTGACACTGGGAAGT-------GTGTCCACACGTCTGAGGCTTCCCTTCCTAGG---GAAAGGTGGCCC-TGGGAGGCTCCTT-----------TGTGTGC-CTCTGC-TCCCC-ACAATCGTG- s rn3.chr10 110011877 152 + 110733352 GCCCA--GATGACCTTGGA-AGACTA--CTTCAGCAAGCTCTTGAGTCTCTTGCCTCTTCTTCAG-----GCTGAAAGCAGAG--CTGGTGTAGGAGGATGT-------GGGTCC-----TCTGGTG-------TCTTAGG---GAAGGACAGCCATTTGGAAACTCCTT-----------TA-------------TTCCC-ATGGCGGTT- s canFam1.chr18 30397905 141 + 66173745 -------GTCTGCCCTGGAGAGGATGCACCCCAAGGGA--GATGGGTTGT---------GACCAGGATGTGTAGGGA-CAATG---------AGTGGAAGGA-------GGGGTT-----CCTGAGG-------GCCCAGG-----------TCCCCCAGCAGCCCCTCC-----------TGGGTGCTCTCAGCAGCCCC-ACAAAGTTA- s danRer1.chrNA 207959519 178 + 390413307 GTCCACCGATGTCCCTGG---CCTTG--CAGTATAGGC--CCCAGGTTGC---------CCCCTGGACCTGTA---ACTAGGGGCCCCTGACCCCAGCAAGCTACCCAGGGGTCCACCTCTCT-----------TCCTGGACTTGCAGTGTAGGCCCCAAGTTGCCCCTTGGCCCTCCACCTAAGGGC-CCCTG--ACCCC-AGCAAGCTAC a score=14067.0 s hg17.chr17_random 1957924 187 + 2618010 GTGGGAAGGG-----------GCCGC------TGGGGGAGTGGCAGCCCCGGCATCTCAGGCT--GCTTCTGGA-----CAGAGCACA-----GGCTGTGTCTCCAGTAACC-T----AGGGAGCCCTTGGCATTCATGGGGC--CAGTG---------------ACCCGTGCCCAGTGTC-TCTTGACCCTTCCT-----CACAGCAACCTGAGGAGTAGACCA--------GGCCTCACCTGAAATCTGT s panTro1.chr19 81214207 187 + 82489036 GTGGGAAGGG-----------GCCGC------TGGGGGAGTGGCAGCCCCGGCGTCTCAGGCT--GCTTCTGGA-----CAGAGCACA-----GGCTGTGTCTCCAGTAACC-T----AGGGAGCCCTTGGCATTCATGGGGC--CAGTG---------------ACCCGTGCCCAGTATC-TCTTGACCCTTCCT-----CACAGCAACCTGAGGAGTAGACCA--------GGCCTCACCTGAAATCTGT s rn3.chr10 110012029 212 + 110733352 GTGGGGTGGGGGGGATTATCAGCCAT------TGGGAAAACAGTAGCCCAGCCCTAGTGTGTTAAGCTCCTGGG-----TAGAGACCAATTTTGGCTG-GTATCCGGGAGTCGT----GGCCAGCTCCGCGC---CTTGTCTT--CACTG---------------A-CCATTCCCAGTAACACCTTCACATTCCCTATGCGCTCTACAGCCTGGGGAGTAGACCACCATGGCTGGTTCCACCC---ATCTGT s danRer1.chrNA 207959697 214 + 390413307 ---CCAGGGG-----------TCCACCTCTCTCTCTGGACTTGCAGTAAAGGC--CCCAGGTT--GCCCCCTGGAACTCCAAATAGGG-----GCCTCTGACCCCAGCAAGC-TACAAAGGGGTCCCCCTCTCTTCCTGGACTTGCAGTATAGCCCACAGGGTGCACCTTTGCCCTCCACC-TGGGGGCCTCTGAC-----CCCAGCAAGCTACCCAGTGGACCA--------AGTCTCACCTTGGACTTGC a score=300.0 s hg17.chr17_random 1958111 1 + 2618010 g s panTro1.chr19 81214394 1 + 82489036 g s rn3.chr10 110012241 1 + 110733352 G a score=60691.0 s hg17.chr17_random 1958112 659 + 2618010 tcagggttctctagagagacaggactctatatgaagagtatatatgaagagtttattngggagtattgactcacgtgatcacaaggtgaagtcccacaataangccatgtgcaaggtgaggagcaaggaagccagtctgagtcccaaaacaaaagtagagaagccgatagtgcagccttcatcctgtggccaaaggctgcagagcccctggcaagccactggtgtaggtccgagagtccaaaagctgaagaacctggaggccgacgtgcgagggcgggaagcatccagcatgggagaaagatggaggccagattcagccagtctagtctttccacgttcctctgcctgcttgtatcctggctgtgctggcagccgattaggtggtgcccacctggattgagggtgggtctgcctctcccagcccactgactcaaatgggaatctcctctggcaacaccctcacagacacacccagtgacaatactttgcatccttcaatccagtcaagctgacactcagcattcaccatcacaCCTGGGAAGCATGGAACCCAGAAACAAGTGCCAGGGCTCCAGTGCCAGTGCCTGTCCTGGGAAGATACCCAAGAGAAGACATGACCAGGACCTTGGGGGAGCATGAAATGGTGAGGGCACAGTGAG s panTro1.chr19 81214395 657 + 82489036 tcagggttctctagagagacaggactctatatgaagagtatatatgaagagtttatt-gggagtattgactcacgtgatcacaaggtgaagtcccacaataa-gccatgtgcaaggtgaggagcaaggaagccagtctgagtcccaaaacaaaagtagagaagccgacagtgcagccttcatcctgtggccaaaggctgcagagcccctggcaagtcactggtgtaggtccgagagtccaaaagctgaagaacctggaggccgacgtgcgagggcaggaagcatccagcatgggagaaagatggaggccagattcagccagtctagtctttccacgttcctctgcctgcttgtatcctggctgtgctggcagcggattaggtggtgcccacctggattgagggtgggtctgcgtctcccggcccactgactcaaatgggaatctcctctggcaacaccctcacagacacacccagtgacaatactttgcatccttcaatccagtcaagctgacactcagcattcaccatcacaCCTGGGAAGCATGGAACGCAGAAACAAGTGCCAGGGCACCAGTGCCAGTGCCTGTCCTGGGAAGATACCCAAGAGAAGACATGACCAGGACCTTGGGGGAGCATGAAATGGTGAGGGCACAGTGAG a score=46680.0 s hg17.chr17_random 1958771 560 + 2618010 CTTGAAGGCTGATGTCACCTGCCAGG------AGAGCGGCTGGCAGTCCTGCCTGGTGCCCCCCAAGGGGCAGAGCTGGCAGAGAGGGGCCTCCAATCGAAGGCCAGGAGTCGTGGAGCTCCAGTGCCTTGGTGTGGCTGGCCTTCTTGCCCCCCTCCCAGAGGACCCCGCCAGTAACAGCCCTGCTGG---TGGAAC----CTTCCCCAGTGGGCATGAAAGAAA----------------------TGAGGGCCCCACAAGCCACATGGA------------CTCTGATGCCTGGAGCCAAGAATACCCCTTAGGGTGGTAGA---------AACCG-CCCCCGGGGCACTGTGCAGTGT----GGCTGGCTCTCCAG--------------------CATCAGGAGTACTGGGGATTGCCTGGGGGACGACTCCTAGGGCTGGGCGCCCGTGGGCCCTCCCCTGCTGCCACTGCGGCCCACGCAAGCCGGGCCTGA-----------AGGGCGCGAGCGGCAT-----GGGNTGGGGAGCTTGAGGGGGCGTTGGGCTCCCACCAAGCGCCAGATCCTTGCGCGCCTCCAGCGCTCGCCCGCGCGGCTGGTTCCTTTGGGATGCGGAGGTGCGACGGCTCCTCCGCGCG----CGCCC s panTro1.chr19 81215052 560 + 82489036 CTTGAAGGCTGATGTCACCTGTCAGG------AGAGCGGCTGGCAGTCCTGCCTGGTGCCCCCCAAGGGGCAGAGCTGGCAGAGAGGGGCCTCCAATCGAAGGCCAGGAGTCGTGGAGCTCCAGTGCCTTGGTGTGGCTGGC---CTTGCCCCCCTCCCAGAGGACCCCGCCAGTAACAGCCCTGCTGG---TGGAAC----CTTCCCCAGTGGGCATGAAAGAAA----------------------TGAGGGCCCCACAAGCCACATGGA------------CTCTGACGCCTGGAGCCAAGAATACCCCTTAGGGTGGTAGA---------AACCG-CCCCCGGGGCACTGTGCAGTGT----GGCTGGCTCTCCAG--------------------CATTAGGAGTACTGGGGACTGCCTGGGGGACGACTCCTAGGGCTGGGCGCCCGTGGGCCCTCCCCTGCTGCCACTGAGGCCCACGCAAGCCGGGCCTGA-----------ACGGCGCGAGCGGCAT-----GGG-TGGGGAGCTTGAGGGGGCGTTGGGCTCCCACCAAGCGCCAGATCCTTGCGCGCCTCCAGCGCTCGCCCGCGCGGCTGGTTCCTTTGGGATGCGGAGGTGCGACGGCTCCTccgcgcgcgcccgccc s canFam1.chr18 30398426 582 + 66173745 CCAGGAAGCTCAGGGCCCCTGCGAGGTCCTCTCAGGCCTCTGGGACCTCAGCC----GTCCCCC-------------------------CCTCCTTCCAGACGCT--GAGGCTCAGAGCACCTGC-CTTTGCCATCACTCTCC--CCTGGCTGCCCCCCA---GCCCCCCCCAGCTGCCCCCCCTCCGGCTCTGGAGCTCTGCTTTCCCAGTTGCTGTGGTTTGAGTCCCGGACGGGCTGATCCCTCCTGGGGGCCACAGATGCTCTCAGGAGAAGGCCTGAGGCTCGGCCGCCCGAGGGCAGGGA------GTGGGGGGCTGGAGGGCCTGGCAGCTGTCCCTCCGTCTGCTCTCCCGAGCTCAGGCCTGGCCTTGCTGCCCACCTCTTCCCAAAGGACCCCCAGGAGTA----GTCCTGCGTGTGCAACAGAGTAAGGCCCCGGGCGCACGCGA---CAGCCATGTCGCCTCTAC------CCCGGGTCGGGCCAGGGGTCCCGCTTTAGGGCCCGAGAGGTGTCCCCCGGCCTGGGGGCAGTGAGGCCCTATGGGG---------AGCGGCGGGGC------CGTCTCCCCCGCCTG--GGGGCAGTGAGGCCCTATGGGGAgcggcggggcccc--ccccacccagcg----ggctc a score=-982.0 s hg17.chr17_random 1959331 14 + 2618010 GCTGCA-CCCCAGCC----- s panTro1.chr19 81215612 15 + 82489036 gctgcacccccagcc----- s rn3.chr10 110014214 14 + 110733352 GTTGCA-CTCCTTCC----- s canFam1.chr18 30399008 14 + 66173745 ------cctgcggcgggggg a score=9812.0 s hg17.chr17_random 1959345 47 + 2618010 -CGCCCGCCGCCCCTCCCGGCCCTCCGCAGCCTCGG---CCCGCCCTCGCC s panTro1.chr19 81215627 47 + 82489036 -cgcccgccgccccTCCCGGACCGTCGCAGACTCGG---CCCGCCCTCGCC s mm5.chr11 120279524 49 + 121648857 -CGCCCGCTCCTCCTCATCCCCCTCC-CTGCCTCTGTCCCCCGCCCCCATT s rn3.chr10 110014231 46 + 110733352 -CGCCCGCTCCTCGGCCC--CCCTCC-CTGCCTCTGTC-CCCGCCCCCATT s canFam1.chr18 30399022 38 + 66173745 gggcccgacggcgctgtgcgcccgcc-------------cccgcgcccgcg a score=7756.0 s hg17.chr17_random 1959392 93 + 2618010 GCAGATATAAGGC-------GG--CCCAGGCGGTGGCTGCTCCGAGCCCGGACGCCGCCGCCCACCAGTCAGCCGGCGTCCCCATGGCCCGGTCCGCGACAC s mm5.chr11 120279573 83 + 121648857 GTAAATATAAAGC-----CTGGTTCACAGACTTCAGTCGCTAC--------ATTCTGCCTGCC-CCTGTCA-----CAGCTCCATGGCCCGGTGTAGGACGC s rn3.chr10 110014277 90 + 110733352 GTAAATATAAAGCCCTGCCTGGTTCGCAGACTTGAGCAGCTAC--------ATTCTGCCTTCC-CCTGCCA---CACGGCTCCATGGTCCGGTGTAGGACGC s canFam1.chr18 30399060 70 + 66173745 gccgatataaggc---------------------ggccgccgc------cgaggccgccgccc-cgcgccc----gcgTCCCCATGGCCCCGAGCGTCCCCC a score=17674.0 s hg17.chr17_random 1959485 26 + 2618010 TGGCGGCCGCCGCCCTGGCGCTGTGC s mm5.chr11 120279656 26 + 121648857 TGGTGGCCGCTGCCCTGGCGCTGCTC s rn3.chr10 110014367 26 + 110733352 TGGTGGCCGCCGCCCTGGCGCTGCTC s canFam1.chr18 30399130 26 + 66173745 TGGTGGCCGCCGCCCTGGCGCTGTGC s fr1.chrUn 148463413 26 + 349519338 TGGTGTGCGTCGCCATGTCTCTGCTC a score=5220.0 s hg17.chr17_random 1959511 23 + 2618010 CTGCTGCTGGCGCCGCCTGGCCT- s panTro1.chr19 81216347 23 + 82489036 CTGCTGCTGGCGCCGCCGGGCCT- s mm5.chr11 120279682 14 + 121648857 ---------CTGCCGCCAGCCCT- s rn3.chr10 110014393 14 + 110733352 ---------CTGACGCCAGCCCT- s canFam1.chr18 30399156 23 + 66173745 CTGCTGCTGGCGCCGCCCGGCCT- s fr1.chrUn 148463441 18 + 349519338 ------CTCCTGCGATCAAGTCGA a score=33771.0 s hg17.chr17_random 1959534 26 + 2618010 CGCGTGGTACAAGCCAGCGGCGGGGC s panTro1.chr19 81216370 26 + 82489036 CGCGTGGTACAAGCCGGCGGTGGGGC s mm5.chr11 120279696 26 + 121648857 CGCGTGGTACAAGCCCGCGGCGGGAC s rn3.chr10 110014407 26 + 110733352 CGCGTGGTACAAGCCCGCGGCGGGAT s canFam1.chr18 30399179 26 + 66173745 CGCGTGGTACAAGCCGGCGGCCGGGC s fr1.chrUn 148463459 26 + 349519338 AGCCTGGTACAAGCAGTCCACCGGGC s danRer1.chrUn 47367375 26 + 367113659 CGCCTGGTACAAGCAGTCGACCGGTC a score=33585.0 s hg17.chr17_random 1959560 43 + 2618010 ACAGCTCCTACTCGGTGGGCCGCGCCGCGGGGCTGCTGTCCGG s panTro1.chr19 81216396 43 + 82489036 ACAACTCCTACTCATTGGGCCGCGCCGCGGGGCTGCTGTTCGG s mm5.chr11 120279722 43 + 121648857 CCCACCACTACTCGGTGGGCCGCGCCTCGGGGCTACTGTCGAG s rn3.chr10 110014433 43 + 110733352 CCCACCACTACTCGGTGGGCCGCGCTGCGGGGCTACTGTCGAG s fr1.chrUn 148463485 43 + 349519338 CCAGCTATTACTCAGTGGGTCGCGCCTCTGGCTTGCTGTCCGG s danRer1.chrUn 47367401 43 + 367113659 CAAGTTACTATTCGGTTGGGAGAGCGTCGGGTTTGCTGTCGGG a score=3742.0 s hg17.chr17_random 1959603 53 + 2618010 CCTCCGCAGGTCCCCGTACGCGCGGCGCTCCCAGCCCTA---------------CAGAGGGGCGGAA-c s panTro1.chr19 81216439 54 + 82489036 CTTCCGCAGGATCCCGTACGCTCGGCGCTCCCAGCCCTA---------------CAGAGGGGCGGAAcc s mm5.chr11 120279765 43 + 121648857 TTTCCACAGGTTCCCGTCCACGCGACGCTCCGAGTCTC------------------------CAGCA-- s rn3.chr10 110014476 43 + 110733352 TTTCCACAGGTTCCCATCCACGCGACGTTCCGAGTCTC------------------------CAGCA-- s canFam1.chr18 30399463 33 + 66173745 CAGCGACAGGAACACGTCCGCCCGGCAC----------------------------------GAGAA-- s fr1.chrUn 148463528 49 + 349519338 AATCAGGAGGTCGCCGTACGTCCGGAGGTCTGAGTCCG------------------AAGAGGCAGTG-- s danRer1.chrUn 47367444 63 + 367113659 CATCCGGAGGTCGCCGTATGTGCGCCGGTCTGAGGGGGAATCAGCGCTGGACAGCGGAGAGAC------ a score=0.0 s hg17.chr17_random 1959656 20 + 2618010 ccccgggcggggccggcgcc a score=5653.0 s hg17.chr17_random 1959656 20 + 2618010 ccccgggcggggccggcgcc s panTro1.chr19 81216493 20 + 82489036 ccccgggcggggccggcgcc s mm5.chr11 120279808 20 + 121648857 CTCCGGGTGGGAACCGGACC s rn3.chr10 110014519 20 + 110733352 CTCCGGGTGGGAACCGTACC s canFam1.chr18 30399496 13 + 66173745 -------GGAGGCGCGGCCG a score=3817.0 s hg17.chr17_random 1959676 6 + 2618010 TCCCCG s panTro1.chr19 81216513 6 + 82489036 TCCCCG s mm5.chr11 120279828 6 + 121648857 TCTGCG s rn3.chr10 110014539 6 + 110733352 TCTGCG s canFam1.chr18 30399509 6 + 66173745 TCGGCG s danRer1.chrUn 47367507 6 + 367113659 TCCCGG a score=5645.0 s hg17.chr17_random 1959682 30 + 2618010 GAGCTGCAACTGCACCCCAGGCTGCGGAGC s panTro1.chr19 81216519 30 + 82489036 GAGCTGCAACTGCACCCCAGGCTGCGGAGC s mm5.chr11 120279835 30 + 121648857 AATTTAGAGATGCGCCCCAGCGTAAGGAGC s rn3.chr10 110014546 30 + 110733352 AACTTGGAGATGCGCCCAAGCGTAAGAAGC s canFam1.chr18 30399515 13 + 66173745 -------AGCCGCAC----------GCAGC s fr1.chrUn 148463579 25 + 349519338 GGACAGCGAGGACGCACCGG-----GTAAC s danRer1.chrUn 47367513 26 + 367113659 GGTCTCCAACAGCGTCCTGGC----GGAGC a score=5400.0 s hg17.chr17_random 1959712 21 + 2618010 CTCGTGAGTCCGGCGTGCCGG s panTro1.chr19 81216549 21 + 82489036 CTCGTGAGTCCGGCGTGCCGG s mm5.chr11 120279865 18 + 121648857 CTTGTGAGT---GCAAGCAGG s rn3.chr10 110014576 18 + 110733352 CTTGTGAGT---GCAAGAGGG s canFam1.chr18 30399528 18 + 66173745 CCCGCAGGT---TCGGGGAGA s fr1.chrUn 148463604 21 + 349519338 AACGTGATTCCGGACAGCAGG a score=-6003.0 s hg17.chr17_random 1959733 31 + 2618010 -----GGACTGATG-GGGGGCGGCGGCAGGACG----------------TGGG s panTro1.chr19 81216570 31 + 82489036 -----GGGTTGATG-GGGGGCGGCGGCAGGACG----------------TGGG s mm5.chr11 120279883 31 + 121648857 -----CGATGGGTG-GCGGGAGCTGGTGGGACA----------------GGGG s rn3.chr10 110014594 24 + 110733352 -----CGGTGGGTG-GCGGGAGCTGGTGGG----------------------- s canFam1.chr18 30399546 31 + 66173745 -----CGCCCAAGACACAcgcggccgcggggcg----------------ggg- s fr1.chrUn 257706338 51 - 349519338 GGAATTATGGGATG-GCTCTCATTGCCATGACGTCCTACATGATCCATATGA- a score=-2144.0 s hg17.chr17_random 1959764 4 + 2618010 -TNGG s panTro1.chr19 81216601 4 + 82489036 -TGGG s rn3.chr10 110014619 3 + 110733352 -CAG- s canFam1.chr18 30399578 3 + 66173745 -cag- s fr1.chrUn 257706389 4 - 349519338 TTTG- a score=958.0 s hg17.chr17_random 1959764 35 + 2618010 --------TNGGGGGTGCGGCGGCCCCTCAGCCTTTGCTTGCC s mm5.chr11 120279914 22 + 121648857 --------------------CGGGCCCTCAGCCTCCACC-GCC s rn3.chr10 110014618 29 + 110733352 -------------ACAGGGACGGGCCCTCAGCCTCCACC-GCC s canFam1.chr18 30399577 34 + 66173745 ---------tcaggcccgggcgcccccTCAGCCTCCTCCCGCC s fr1.chrUn 257706389 42 - 349519338 TTTGTGCTGTACGTCAAAGATAGATGTTCATGTTCTGCT-GCT a score=-2342.0 s hg17.chr17_random 1959799 7 + 2618010 --TGCCCCC s mm5.chr11 120279936 5 + 121648857 --TACCC-- s rn3.chr10 110014647 5 + 110733352 --TACCC-- s canFam1.chr18 30399611 3 + 66173745 ----CCC-- s galGal2.chr3_random 659975 7 + 1636275 --TTCCCTG s fr1.chrUn 257706431 5 - 349519338 --CTCCC-- s danRer1.chrUn 47368762 7 + 367113659 TTCTCCT-- a score=97422.0 s hg17.chr17_random 1959806 105 + 2618010 CAGGCTGTGTGCGTCCAGGACGTCGCCCCAAACCTGCAGAGGTGCGAGCGGCTCCCCGACGGCCGCGGGACCTACCAGTGCAAGGCGAACGTCTTCCTGTCCCTG s mm5.chr11 120279941 104 + 121648857 -AGGCCCTGTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGACGTCTTCTTGTCGCTG s rn3.chr10 110014652 104 + 110733352 -AGGCCCTGTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAGGCGGACGTCTTCTTGTCGCTG s canFam1.chr18 30399614 104 + 66173745 -AGGCCGCGTGTGTCAAGGAAGTCTCCCCGAACCTGCGGAGCTGCGAGCGGCTCCCCGACGGCCGCGCCACCTTCCAGTGCCGGGCGGACGTGTTCCTGTCGCTG s galGal2.chr3_random 659982 105 + 1636275 CAGGTGCCGTGTGTGACAGATGTGGACCCCGAGCTACGGAGCTGCCGGCCGCTGTCGGGGGTCCCCGGTGCTCTCCAGTGCAGAGTGGCTGTGACGGTGTCCTTG s fr1.chrUn 148463865 105 + 349519338 CAGGCCATCTGCGTAAAGGACATCTCCCCCAACCTGAAGAGCTGCGAGCTGCTGCGGGACGGGACGGGCACCTTCCAGTGCAAGGCGGACGTCTTCCTCACCCTG s danRer1.chrUn 47368769 105 + 367113659 CAGGCGATCTGCGTAAAGGACATTTCCCCAAACCTACAGAGCTGCGAGCTGCTTCAGGACGGTTCGAGCTCGTTTCGTTGCAAAGCAGACGTGTTTCTGTCGCTC a score=22441.0 s hg17.chr17_random 1959911 28 + 2618010 CGCGCAGCCGACTGCCTCGCCGCCTGAG s panTro1.chr19 81216708 28 + 82489036 CGCGCAGCCGACTGCCTCGCCGCCTGAG s mm5.chr11 120280045 28 + 121648857 CACGAGACTGATTGCCAGAGCACCTGAG s rn3.chr10 110014756 28 + 110733352 CACAAGGCTGAATGCCAAAGCGCCTGAA s canFam1.chr18 30399718 28 + 66173745 CGCGCCGCCGACTGCCGCAGCGCCTGAG s galGal2.chr3_random 660087 28 + 1636275 GTCTCCACGGAGTGTGCAGGCGCCTGAG s fr1.chrUn 148463970 28 + 349519338 GACTCTCTGGACTGTCTGTCCGCATGAG s danRer1.chrUn 47368874 28 + 367113659 GACTCTCTGGACTGCTTCACCTCATGAG a score=-9382.0 s hg17.chr17_random 1959939 34 + 2618010 ----CCCGGACCTC--------TCCTGGCACCGCT-----GGGGGCCCCCC s panTro1.chr19 81216736 34 + 82489036 ----CCCGGACCTC--------TCCTGGCACCGCT-----GGGGGCCCCCC s mm5.chr11 120280073 37 + 121648857 ----CCCTGAACCC-----CAACCCTGCGGCCGGT-----GACTCTCCCCA s rn3.chr10 110014784 42 + 110733352 ----CCCCAACCCAAACCTCGACGCTGCGGCCACT-----GACTCCCCCTC s canFam1.chr18 30399746 13 + 66173745 ----CCC----CCC------------------------------GCCCCCC s fr1.chrUn 148463998 29 + 349519338 ----------------------TCCTGCCGACCCTGCGGAGGCAGACCACC s danRer1.chrUn 47368902 38 + 367113659 CGGCGCCGGTCCTT--------TCCCTCCCCGACC-----CGAGTCTCTTC a score=-11579.0 s hg17.chr17_random 1959973 27 + 2618010 GCCCNCCA------CCGTCCCACTCGGTG-------ACCC s panTro1.chr19 81216770 26 + 82489036 GCCC-CCA------CCGTCCCACTCGGTG-------ACCC s mm5.chr11 120280110 33 + 121648857 ACCC-CCATATGCCCAGTCTTGCTTGAAG------TAGCA s rn3.chr10 110014826 33 + 110733352 CCAG-CCA------CCCCCTTACTCCCAGTCTTGCTAGCA s canFam1.chr18 30399759 10 + 66173745 GCGG-TAA------CCC----------------------- s fr1.chrUn 148464027 27 + 349519338 GCATCCCG------GGGCTCTTCTCTGGA-------AACT a score=2862.0 s hg17.chr17_random 1960000 4 + 2618010 CAGG s panTro1.chr19 81216796 4 + 82489036 CAGG s mm5.chr11 120280143 4 + 121648857 CAGA s rn3.chr10 110014859 4 + 110733352 CAGG s fr1.chrUn 148464054 4 + 349519338 TAGG a score=5184.0 s hg17.chr17_random 1960004 64 + 2618010 CCCCTCCGGCGCGGGATGGCGCCCCAGGTCTCCCCTACTCCGCTCACCCCGCAGTTAATGGC-AA s panTro1.chr19 81216800 64 + 82489036 CCCCTCCGGCGCGGGATGGCGCCCCAGGTCTCCCCTACTCCGCTCACCCCGCAGTTAATGGC-AA s mm5.chr11 120280147 53 + 121648857 CCCT----GTGTGGGTTTGGCCCCTAG----CTCCCACCATGCT----CCATAGCAAATGGCTAA s rn3.chr10 110014863 49 + 110733352 CCCT----GTGTGATTTGGCTCCTGTGG---CCCCTA----ACTCCCACCGAGCTCCA-----AA a score=16322.0 s hg17.chr17_random 1960068 46 + 2618010 ----ACGAATAAATAAATGAGGCGGC----CTCGGAGTGAGG------GGTGCTGGAGGA s panTro1.chr19 81216864 46 + 82489036 ----ACGAATAAATAAATGAGGCGGC----CTCGGAGTGAGG------GGTGCTGGAGGA s mm5.chr11 120280200 45 + 121648857 ----ATTAATAAAGAAGCAAAACTGT----CTCTGC-TAAGG------GTTGCTGGAGGA s rn3.chr10 110014912 45 + 110733352 ----ATGAATAAAGAAGCAAAACCGT----CTCTGC-TAAGA------GTTGCTGGAGGA s canFam1.chr18 30399822 60 + 66173745 AAAAGTGAATAAATGAGAAGCGCAGCTGGACTCCGAGTGGGGGCGGGCGGTGCCTGGGGA a score=-97.0 s hg17.chr17_random 1960114 8 + 2618010 -------CTGGCAGC s panTro1.chr19 81216910 8 + 82489036 -------CTGGCAGC s rn3.chr10 110014958 7 + 110733352 -------ATGG-AGC s canFam1.chr18 30399882 15 + 66173745 CCCCGACTCCGCCGC a score=12336.0 s hg17.chr17_random 1960122 201 + 2618010 ---------CAGGCCACGAGGGG----------------AACGGGACCTGGAAATCCCCAAGCCTGGGTATGAGAAGG----CAGCCGAG---TGTGCGGCGGCAGGGCAAG------------------------GTTGGCCTGG----GCCGCCCAGAGGTCTTCAGACCCAGGGGCGAAGCTGGCCACGAC--NCCAGCCCCGCGGTGAAGCCGCGCCTAGCCTTGGTGCTCC----------------------CTGGGGGAAGTG----------------------------------------------------CAGGGCCACGGCTGG s panTro1.chr19 81216918 200 + 82489036 ---------CAGGCCACGAGGGG----------------AACGGGACCTGGAAATCCCCAAGCCTGGGTATGAGAAGG----CAGCCGAG---TGTGCGGCGGCAGGGCAAG------------------------GTTGGCCTGG----GCCGCCCAGAGGTCTTCAGACCCAGGGGCGAAGCTGGCCACGAC---CCAGCCCCGCGGTGAAGCCGCGCCTAGCCTTGGTGCTCC----------------------CTGGGGGAAGTG----------------------------------------------------CAGGGCCACCACTGG s canFam1.chr18 30399897 318 + 66173745 CAGACACTGCGGGTCCCCAGCGGGTGTCCCAGCCCCCCCAGGCAGGCAGAGGCACCCCAAACCCTGGGGCAGAGAAGGTGCCCAGCTCGGGCCTCCGCGGTGACCACGCAGGCGCCCCACGCCCGCCCCCACCCCAGGCGGCTCCGCCCTGCTTCCTGGATCTCTTC-------GGGACAAGGCTGTTACTGGAGGGGCAGCCCC----TGGGGTCACCCTT--TCTTGGCGCTCCTGAAACACCTCGAAGTAGTAAGCACGGGGCAGTGGCCGCGGGGTGGGGAGCAGCCTGCGGACCTCACGGCGCCCCAGGAGGCCTGACAAGGCCGC------ a score=5437.0 s hg17.chr17_random 1960323 37 + 2618010 CCCGGTT--------CCCAGTGTCCT--CCCCCAGCCCTTCGCTCCC--- s panTro1.chr19 81217118 37 + 82489036 CCCGGTT--------CCCAGTGTCCT--CCCCCAGCCCTTCGCTTCC--- s rn3.chr10 110015199 39 + 110733352 CTCAGGC--------CCTAGCACCCTGCCCCTCAGTCTTTCACAGCC--- s canFam1.chr18 30400215 45 + 66173745 CCCGCCCCTCGCAGGCCCAGCGCCCG--CACTCAGCCCTCC---TCCAGG a score=14459.0 s hg17.chr17_random 1960360 149 + 2618010 CAACTCGAGAGCCAAATCTGTGAGGGCATGGGCT-----GGAGCCCCTGGCTGCCTTCCTCTTGCCCCC---ATCCCTTCTGGCCA--GGCCAAG---TCCGAGGGTGCAGG----GGCAAGGAGGA----GAGTTGGGGGCCTGAGCCCTGGCTCCAGAGGC--CCAGAGC s panTro1.chr19 81217155 149 + 82489036 CAACTCGAGAGCCAAATCTGTGAGGGCGTGGGCT-----GGAGCCCCTGGCTGCCTTCCTCTTGCCCCC---ATCCCTTCTGGCCA--GGCCAAG---TCCGAGGGTGCAGG----GGCAAGGAGGA----GAGTTGGGGGCCTGAGCCCTGGCTCCAGAGGC--CCAGAGC s canFam1.chr18 30400260 166 + 66173745 CTAATCACCTACTTTATTGGGGGGAATCTGGGTTCATTCGAAACCCCAGCCTGC--TGAGCCCGACCCTGAGGTCCCTTCTGGGCACGGACCGGGCCCTCCGGGGAGGCTGGCTGAAACGAGGTGGGCACTGTGCTGGGCGTC----CCCCAACCCCGTGGGCGTGCAGGGC a score=40532.0 s hg17.chr17_random 1960509 860 + 2618010 ATGCCTCCCCAGAGCTGAAGG---TGGGAGATGGGTAGGTTCTCCCTCCGCCGTTGGGTGTGACTCC---GGAACTGGCTTG---GGCTCTGG----CCTCCAATGCT----GCTACGGGGCCAGGC----------CCACCTCCGGGCCCAGGCAGCAG--------CACTGCAGGGCCTTTCTACCCT------CCCCAAGCCTGGGGCCCAGGCAGCCCCTGTCCAGCACCA-----ATCTGTCTATGGGGAACTGG------CTGGTCCCTCTGCTCAGGGGACCCCGCAGTCCAGGGTTCTGAG------------TGGGAGCATTGGCA-CCACCCCACTCCTGAAAGCGGGGGCCTGGCAGGATGAGGATGGCCTGTGCCCCCCACACCTT--GGCCCCTGGCTCGGAGAGCAGGGTGACAG-------GCTGCCTTCCT-----------GGGCTGTGGAGAGCCTCGCGTGCACCTC-GCCTCCAGCTCCTGTGCTGGGTC---GTGAGGTCGACCTCACAAC-AGCAGAGGACAGGCC------CATGGG-----------------GTGCCACATGGGCCAGGTGC---TGTAGGGCAGAGG---------CCATTCTGGA---------GA---GGAATG------------TGGGGCTGAAAAAAGTAC-TGATCATAAGCCTCA-TTTTGAATGCGGCGAGACCAGGCAATCTATGGCCT--CCCTAGACACCTCCCNGGAGGCTGCAGTAAGAACCTCTTCGGCCTCT-GGGCTGCTCCAGGCGGGCCGTGACAGGGGTGTGGGAG--ACAGAGATCCCATGGCCCCTGGAGGGGCCAAGGGGCAAGGAGCCTCAGCTCTG----GCTCTCCTCCTTATTCTAGCATC----GCC-TGCTACAGGGG-------------------GTGGCCC--------------CAGGCT-------TTGGAGGGCTGGAGGCCTGGGTT---------------------TCACTCACTGCCAGGCTGCCCG---CTGCACTC--CCGGCT----GCTGGGTGCATGGTGGGG-GCAGGGCCAAGAG s panTro1.chr19 81217304 861 + 82489036 ATGCCTCCCCAGAGCTGAAGG---TGGGAGATGGGTAGGTTCTCCCTCCGCTGTTGGGTGTGACTCC---GGAACTGGCTTG---GGCTCTGG----CCTCCAATGCT----GCTAAGGGGCCAGGC----------CCACCTCCGGGCCCAGGCAGCAG--------CACTGCAGGGCCTTTCTACCCT------CCCCAAGCCTGGGGCCCAGGCAGCCCCTGTCCAGCACCA-----ATCTGTCTATGGGGAACTGG------CTGGTCCCTCTGCTCAGGGGACCCCGCAGTCCAGGGTTCTGAG------------TGGGAGCATTGGCA-CCACCCCACTCCTGAAAGCGGGGGCCTGGCAGGATGAGGATGGCCTGTGCCCCCCACACCTT--GGCCCCTGGCTCGGAGAGCACGGTGAGAG-------GCTGCCTTCCT-----------GGGCTGTGGAGAGCCTCGCGTGCACCTC-GCCTCCAGCTCCTGTGCTGGGTC---GTGAGGTCGACCTCACAAC-AGCAGAGGACAGGCC------CATGGG-----------------GTGCCACATGGGCCAGGTGC---TGTAGGGCAGAGG---------CCATTCTGGA---------GA---GGAATG------------TGGGGCTGAAAAAAGTAC-TGATCATAAGCCTCA-TTTTGAATGCGGCGAGACCAGGCAATCTATGGCCT-CCCCTAGACACCTCCC-GGAGGCTGCAGTAAGAACCTCTTCGGCCTCTGGGGCTGCTCCAGGCGGGCCCTGACAGGGGTGTGGGAG--ACAGAGATCCCATGGCCCCTGGAGGGGCCAAGGGGCAAGGAGCCTCAGCTCTG----GCTCTCTTCCTTATTCTAGCATC----GCC-TGCTACAGGGG-------------------GTGGCCC--------------CAGGCT-------TTGGAGGGCTGGAGGCCTGGGTT---------------------TCACTCACTGCCAGGCTGCCCG---CTGCACTC--CCGGCT----GCTGGGTGCATGGTGGGG-GCAGGGCCAAGAG s rn3.chr10 110015643 813 + 110733352 AAGTCCACCCATAGCACCAGG---TAGAAGCTTGGCCTGACTGCCTTTCATAGATGACAG-AACTCA---GTGGCCCCCCT----GGCCCGCC----CCTCACATATTCTGGGTCACAGAGCCAGGTGAGCAGCTAACCAGTTCTGCCTCCAG---------------------CGGTCTCTTTTGCTTTGCTTTCCCTCTATCCCAGGGCAAATGCAGGTA--GGCAAGTGCCAC----CTCAGGTTCCAGAGCTCTGG-----ATTGGGTCTGCTGTTGAGGGCATCCTCC----------TCTCTG------------TGGTGCCCTCAACAGCCACACCTCACCTAGAAGTCATGTACT----AGAGCACGCCTGCCTGT-------ACGGCGT--CACCCTGGGTCCAGGCAGCAGCACACTCA-------GATGGCTTCCT-----------TGACCTGAGACTGCTTGGGTTATTTCACAGCCCCGGGATCCTA------------GTGCGGGCGCTACCATTCCTAGCAGGCAGCAGGGT------TGAAGT-----------------AAGGAAAAAATGCCAAGGACTTGTTCAGGCTGGAGGTAGGTGTGCCCCTTCTCCA---------GACCCTGACTC------------TAGGTTTGAAACATTCACAAGGTCTCCTGCCTCA----------AAGGGAGACAGGGCA------GGTCTACGCTTCAGCAGCTGAC-TGGGCATGGGATAAGA----------------GAGTTCCACCAG---------AATCGGTGTTTGGGAGGAGCCTGGGCCTCACCATTCCT--------------GTCAGTTGCTTCATCACTGAGCTGGTCTCC-CCACAATCAACCACCAAGAGGC-AGCTATAGGGGCCTCCGAATCCATCTGCCAGGGTACC--------------CAGATGTAGCCAATGGGAGAGCCAGGGGCATGCG------------------------CACAAGCTGCCGAGCTTCCCGGCCCAGCACTC--CCTTTT-----------------------------CCAAAAG s canFam1.chr18 30400426 930 + 66173745 -------CCTGCACTCAGAGGCTATGGGAGCCCCACAGCCCCGCTGCTCCCGAGCGCATGTCTCTCCAGGGGCACGGGCTTGCCAGGCTCTGGGCCTCCTTCGTCGGT----CCCACAGGGC---------------TCCCCGCTGCCCGCAGTCCTCAGCTGAGGGCCACAAGGGGG------GATTCT------GGACAGGTGTAGGGCT--GATTGCTCCCGTCCTGCCCCATCCGACTCCATGCAGGGCAGGCTGGTCCCTCCTTGTCCCTCCGCTCATGAGACCCTGAAGCCCAGGGGACCAGGAGCCTCAAGTGTGGGGAAGCCGGACA-CCACCACGCCCCCAAAGCTGGGGGTCC------------------CATGCCTCTCACGACTTTCTACCCTAACTTGGGGAAGGAGGAAAGGAAAGCTGGTGGTGGCTGCCCAGCCGAGGGTGGGGATGTGAACTTCCACGGTCACTTCCC---TTCTGTGTCCTGCACGGGGTTCTAGTTACATCAACGGGA-----AGAAAAGGACAGGCCGTGTCTTAGAGGGAAAGGATCCCAGCCCTGTGCTCCGTGGGCCAGG--C---TGCAGGGTACGGC---------CTCACCCGGACCAGCTGCTGA---GGAACGGATGCCCTTGGTGGGGGCTGAAAACACCCC-----CACCGTCCCCACCTCTGAACACGTCTGAACTACTGCTGTTCCCCCCT-GCCCTAAACAATGA---GGTGACCAGAGTCAGCACC-CTACAGCCGCC-GGGCTGCTCCCAGTGGGCCCTAA---------------------GATTCTCTGGGTCCA-------------GTCAGGGAGCTGGAGCCCGG----TCCTTCCTGGAGGTGTGGGCTCT----GCAGAGCCACAGGGA-------------------GTGGCTCCCTTGGCCTCGGGACAGGGT-------CTCGGGGACGGGCTCCCTGGGATGGGGTCTCCGGGACCCAGGGACTCCTCGCTGCCAGGCCGCCCA---CACCCCTCCGCCGCCTCCCCGCTGCGTGGACGGTGGGGAGCGGGGCCAAGAG a score=0.0 s hg17.chr17_random 1961369 37 + 2618010 GGTCTCCTTGCTGAGTGGTTCCCTNGGTCCTTCCCAG a score=783.0 s hg17.chr17_random 1961369 8 + 2618010 GGTCTCCT s panTro1.chr19 81218165 8 + 82489036 GGTCTCCT s rn3.chr10 110016456 8 + 110733352 AGCTCTTT a score=3295.0 s hg17.chr17_random 1961377 29 + 2618010 -----------TGCTGAGTGGTTCCCTNGGTCCTTCCCAG s panTro1.chr19 81218173 28 + 82489036 -----------TGCTGAGTGGTTCCCT-GGTCCTTCCCAG s mm5.chr11 120281170 24 + 121648857 -----------TGTGGACCGGTTCCA--GTTTCTTCC--- s rn3.chr10 110016464 36 + 110733352 CTGTGAGTGGATGTGGATGGATTTCCT-GCTCCTTCC--- a score=123784.0 s hg17.chr17_random 1961406 648 + 2618010 CAGGGCTGGGAGCCCCGCGCAGCACTG-CCACCAGGCTTTATTCGGTTGTACCAAAGAGATTTCCGTCAGCCAT----GTACAAAC-----AGAACAG---AGTCCATAAGGAGAGTGGCGAAGCT-GCCGGGAAGG-AAGGCAAGCGTGTTTTCCTGGAGCCAGGCGCTGGGTGGCAGGACA----CCGTGTTGGGGGGTGCCCAGTGGGAGGNTGGTGTGGTCTACACCCAGAGAACTAAAGGGGTGACCGC----AGTCACTGC-TCCCTAAAGCCCTCTGCTCTGCACCTCCCGCCACAGCTGGGTGGGCAGTCAGT-----GTGGCC------------TCTGTCCAGGTGGTGGGGGCATCCGGGGACCAGG----TGGGGGC-------------------GCACGCNAGG-------AGCGGTGCGTTTC----AGGCTGCAGGTGCCGTCTGCCCGTCTCACTTCCGG-NCCTCTCCACTGTGCTGGACACCCTCTCTGAGCAGCTTTGCTGGAAAGAGCGGAGAGCCTGCTGCAAACCAGGCACCTTGTA-GGCAGG-CAAGGAGGCAGAGTCCTCACCA-GCCCTTCCAGAGCCAGGCCAGTTAGAGAGGGCG--GCCCTGCAGAGTCCTATGTCCAAACGCA-GAAGGCGCAGAAGCAGAGCAGGG-------------GGAGGGCC---GGCCAGGGC--------CTCTGCCAGGTTAGAAGTCACCATCGCNGCTCCCC s panTro1.chr19 81218201 646 + 82489036 CAGGGCTGGGAGCCCCACACAGCGCTG-CCACCAGGCTTTATTCGGTTGTACCAAAGAGATTTACGTCAGCCAT----GTACAAAC-----AGAACAG---AGTCCATAAGGAGAGTGGCAAAGCT-GCCGGGAAGG-AAGGCAAGCGTGTTTTCCTGGAGCCAGGCGCTGGGTGGCAGGACA----CCGTGTTGGGGGGTGCCCAGTGGGAGG-TGGTGTGGTCTACACCCAGAGAACTAAAGAGGTGACCGC----AGTCACTGC-TCCCTAAAGCCCTCTGCTCTGCACCTCCTGCCACAGCTGGGTGGGCAGTCAGT-----GTGGTC------------TCTGTCCAGGTGGTGGGGGCATCTGGGGAGCAGG----TGGGGGC-------------------GCACGC-AGG-------AGCGGTGCGTTTC----AGGCTGCAGGTGCCATCTGCCCGTCTCACTTCCGG--CCTCTCCACTGTGCTGGACACCCTCTCTGAGCAGCTTTGCTGGAAAGAGCGGAGAGCCTGCTGCAAACCAGGCACCTTGTAGGGCAGGACAAGGAGGCAGAGTCCTCAGCA-GCCCTTCCAGAGCCAGGCCAGTTAGAGAGGGCG--GCCCTGCAGAGTCCTATGTCCAAACGCA-GAAGGCGCAGAAGCAGAGCAGGG-------------GGAGGGCC---GGCCGGGGC--------CTCTGCCGAGTTAGAAGTCGCCATCGC-GCTCCCC s mm5.chr11 120281194 618 + 121648857 CGGGGTCGGGAG-CCTACAGAGTGCTTCCCACAAGGCTTTATTCAGTTGAGCCAC---------------CAAA----GTACAATG-----AGGACCAGGCAGTCTCTGCAGAGGACAGCCGTGCT-GCCCAGCTGTCGGGGCAAGTGCATCTTCCAGGAGTCAGGAATGGGGTGCTAGAACGTGCCCCAAGGTAGAGGGTGCCCACGGGCAGG-----GTGGCCCAGGAACAGAGG-------------------------------TCCCCAAAGC------CTCTGGACCTTTCACCAAAGCTCAGTGGGCAGAT-GT-----GCAGCT------------TCCAGTCAGGCAGGAGGGGTATCTCTGGCCAAGA----CTGGGGCAGTGGCAGTTGGAACCCATGGATGCCCGGGATACACAGCAACACGCCTCCAGTCAGTCACAGGTG-CATCTGCTTATCCTGTCCACGG-GCCACATCATTGGGCTAGCTACCCTCTCTGAGCAGCTCAGA-GGGAAGGGCTGAGAGCCTGCTGCAAGGCAGGTGCCTCGCA-GGCAGG---------CAGCACCCTCAGCA---------------AGGCCAGTT-------------TCCTTTGGAATTGTGTGAGCTGACATC--AAGACACAGAAGCAGAGCCGGGCAGGAAGAGAAGAGGTGGGCACAGGGCAAGGGCGTGAACAACATCTCCGGGTCTGAAGCTA--GTCAA-TCTCCCC s rn3.chr10 110016500 626 + 110733352 TAGGGCGAGGAG-CCCACCGAGCACTTCCCACTAGGCTTTATTCAGTTGAGCCAAAGAGGTTTACATCAGCCACTGAGGTACAAAC----GAGGACCAGGAAGTCTGTGCGGAGGGCAGCCACGCTGGCCCAGCCACCCGGGCAAGTGCATCTTCTAGGAGTCAGGAATGGGGTGCTAGAACGTGCCCCAAGGTAGAGGGTGCCCACGTGCAGG-----GTGGCCCAGGAACAGAGG-------------------------------TCCCCAAAGC------CTCTGTACCTTTCACCAAAGCTCGGTGGGCAGAA-GT-----GCAGCT------------TCCAGTCAGGCAGGAGGGGTATCCCCAG-CCAAA----CTGGGACAGTGGCAGTTGGAACCCGTGGATGCCAAGGATACACAGCAACACTCCTC----CAGTCACAGGTGCCGTCTGCTTATCCTGTCCACGGGGCTGCCCCACTGGGCTAGCTACCCTCTCTGAGCAGCTCAGT-GGAAAGGACTGAGAGCCTGCTGCA-----------------GGCAGG-CAGGGA--CAGCACCCTCAGCA---------------AGGCCAGTT-------------TCCTTTGGAATTGTGTGAGCTGACACC--AAGACACAGAAGCAGAGCAGGGCAGGGAGAGATGAGGTGGGCACAGGGCAAGGGCGTGAATGACGTCTCCGGGTCAGAAGCTA--GTCAG-TCTCCCC s canFam1.chr18 30401356 570 + 66173745 -----CTGGA-----CACAGAACACCTCCCACCAGG-TTTATTTGGTTG-------------TACGCCAGCCAACT--GGACAAAGTCGAGAGAAC-----AGTCTGTGGGGAGACCAGCAAGGCC---CAGGAAGT-GGGGGGAGCGGG----CCAGGGCCCAGGAGAT-----------------------------GTGCCCACGCGAAGG-AGGCATGGTCTGTGACCTGAAGGGCCAATGGGTGTCCCCTCCAGGTCTCTGCTCCCCTGAAGC---------TGG--CTGCCAGGGAGGCTGGGAGGGCAGAAAGTGCTGGGCAGTTGGGCGTCCTGGGTCTGCAGGGGCTGGGGGAGGAGTGGGAG-CCAGGCCTTCTGTGGC-------------------GCACGG-----------GGCGGTGC-CCCC----AGGCCGAAGGGACCCCGTGCTCATCCTGTGCTGGG--CCACCCCGCTGTGCTGGGTACCC-CTCTGTGCTG----GGTGGGAAGACC----ACCC------------------------GGCAGGGGGTGGGGGCAGCGCCTGCCCCTTGGAAACCTCGGAACTGGGCGGCGAGGGGGAGCGCCGCAGTTAAGAACCGTGGAAACTGAGGCCTGCAGGCTGGGCAGCAGAGCGGGCCGGG---------CGTGGGAC---GTCCTGCGC------------------TCACAGGTCACAGTC---GCTCCGT a score=-345.0 s hg17.chr17_random 1962054 6 + 2618010 CAGGGG-- s panTro1.chr19 81218847 6 + 82489036 CAGGGG-- s mm5.chr11 120281812 6 + 121648857 TCCAGG-- s rn3.chr10 110017126 6 + 110733352 TCTGGG-- s canFam1.chr18 30401926 6 + 66173745 CTCAGG-- s fr1.chrUn 148477440 6 + 349519338 --CAGGTC a score=12413.0 s hg17.chr17_random 1962060 14 + 2618010 CTGTGCCGCCTGCT s panTro1.chr19 81218853 14 + 82489036 CTGTGCCGCCTGCT s mm5.chr11 120281818 14 + 121648857 CGGCGCCTCCTGCT s rn3.chr10 110017132 14 + 110733352 CTGTGCCTCCTGCT s canFam1.chr18 30401932 14 + 66173745 CTGCGCCTCCTGTC s galGal2.chr3_random 663415 14 + 1636275 CTCTTCCTCCAGTC s fr1.chrUn 148477446 14 + 349519338 CTGCTGCTCTCTCT a score=112030.0 s hg17.chr17_random 1962074 70 + 2618010 GCCTGGCAGCCTCCAGGAAGGCCAGCTCCTTGGCTTCCTTCTTCTGGTTTCGCGCCTCATACTCCAACCT s panTro1.chr19 81218867 70 + 82489036 GCCTGGCAGCCTCCAGGAAGGCCAGCTCCTTGGCTTCCTTCTTCTGGTTTCGCGCCTCATACTCCAACCT s mm5.chr11 120281832 70 + 121648857 GCTTCGTGGCCTCCAGAAAGGCTAATTCCTTGGCTTCTTTCTTCTGATTCCGTGCTTCATACTCCAGCCT s rn3.chr10 110017146 70 + 110733352 GCCTCAGGGCCTCCAAAAAGGCTAATTCCTTGGCTTCCTTCTTCTGATTCCGTGCTTCGTACTCCAACCT s canFam1.chr18 30401946 70 + 66173745 GCCTCCTGGACTCCAGGAAGGCCAGCTCCTTGGCCTCTTTCTTCTGGTTGCGGGCCTCATACTCCAGCCT s galGal2.chr3_random 663429 70 + 1636275 TCTTCATGGCCTCCAATACTGCCAGCTCTTTGGCTTCCTTCTTCTGGTTCCTGGCTTCAAACTCCAGCCT s fr1.chrUn 148477460 70 + 349519338 TCTTCATTGCCTCGATCACCGCCCTCTCCTTGGCTTCTTTATTTTGGTTCCTGGCCTCAAACTGCAGTCT s danRer1.chr2 4152861 70 - 32943701 GCTTCAAAGCCTGGAGAACAGCCATTTCTTTCGCTTCCTTCTTCTGATTCCTGGCTTCAAACTGCAGCCT a score=0.0 s hg17.chr17_random 1962144 1 + 2618010 G a score=2100.0 s hg17.chr17_random 1962144 1 + 2618010 G s panTro1.chr19 81218937 1 + 82489036 G s mm5.chr11 120281902 1 + 121648857 G s rn3.chr10 110017216 1 + 110733352 G s canFam1.chr18 30402016 1 + 66173745 G s galGal2.chr3_random 663499 1 + 1636275 G s fr1.chrUn 148477530 1 + 349519338 G a score=1684.0 s hg17.chr17_random 1962145 15 + 2618010 AGAGGGCAGGGTAAG s panTro1.chr19 81218938 15 + 82489036 GGAGGGCAGGGTAAG s mm5.chr11 120281903 12 + 121648857 ---GGGCCAGACGGG s rn3.chr10 110017217 12 + 110733352 ---AGGCCAGACAGG s canFam1.chr18 30402017 13 + 66173745 G--GGGCGGGCCGTG s fr1.chrUn 148477531 12 + 349519338 ---GAAACACACAGG s danRer1.chr2 4152931 15 - 32943701 ATAGTACAAAAAAAA a score=587.0 s hg17.chr17_random 1962160 2 + 2618010 TC s panTro1.chr19 81218953 2 + 82489036 TC s mm5.chr11 120281915 2 + 121648857 TT s rn3.chr10 110017229 2 + 110733352 TA s canFam1.chr18 30402030 2 + 66173745 TG s danRer1.chr2 4152946 2 - 32943701 TC a score=-49505.0 s hg17.chr17_random 1962162 99 + 2618010 -TAGCAGAGAGCGCCCATGAGGCGGCTCCGA-----GGGGGAGGGCACGGTAAGTCTAGC-----GGAGAGCGCCCATGAGG----------------------------------------------------------------------------------------------------CGGCTCCGAGGTGCCCCCN-------ACCCAACTG s panTro1.chr19 81218955 198 + 82489036 -TAGCGGAGAGCGCCCATGAGGCGGCTCCGA-----GGGGGAGGGCAGGGTGAGTCTAGC-----GGAGAGCGCCCATGGGGCGGCTCCGAGGGGGAGGGCAGGGTGAGTCTAGCGGAGAGCGCCCATGGGGCGCCTCCGAGGGGGAGGGCAGGGTGAGTCTAGCGGAGAGCGCCCATGGGGCGGCTCCGAGGTGCCCCC--------ACCCAGCTG s mm5.chr11 120281917 84 + 121648857 GTAGGTTGGTTCTCTC------CAATACTGG-----GGGTTTGCCCACTGCCAACCCAGTAGGGGGGAGGGTGGCAGAGGGG----------------------------------------------------------------------------------------------------AGG---GGAGG-------------------AGACA s rn3.chr10 110017231 73 + 110733352 -TAAGCTGGT------------CCTCTCCAATACTGGGAGTTGCCCACTGCCAACCCAGCC----AGAAAGGG----AGAGG----------------------------------------------------------------------------------------------------TGG----GAGG-------------------GGACA s canFam1.chr18 30402032 64 + 66173745 -AGGGGTGCC------------CAGGCCTGG-----GGCCGTGGGGGCTGCGGGCACCAC-------------------------------------------------------------------------------------------------------------------------------CCCAGGCCCCACCC-------GCC-ACCCT s fr1.chrUn 257713236 80 - 349519338 --------------------------TCAAAC----GGAGGAGAGGACGGCAAACAATGC------GATAAAGATCGATATG----------------------------------------------------------------------------------------------------CCGCTACAGGCTTTTATTTTGGCGGGACCCGTTT- a score=4163.0 s hg17.chr17_random 1962261 3 + 2618010 CAC s panTro1.chr19 81219153 3 + 82489036 CAC s mm5.chr11 120282001 3 + 121648857 CAC s rn3.chr10 110017304 3 + 110733352 CAC s canFam1.chr18 30402096 3 + 66173745 CAC s galGal2.chr3_random 664186 3 + 1636275 AAC s fr1.chrUn 257713316 3 - 349519338 TAC a score=-660.0 s hg17.chr17_random 1962264 2 + 2618010 -CN s panTro1.chr19 81219156 1 + 82489036 -C- s mm5.chr11 120282004 1 + 121648857 -C- s rn3.chr10 110017307 1 + 110733352 -C- s canFam1.chr18 30402099 1 + 66173745 -C- s galGal2.chr3_random 664189 1 + 1636275 -C- s fr1.chrUn 148477612 2 + 349519338 CC- a score=145730.0 s hg17.chr17_random 1962266 90 + 2618010 TGTTGGTGATGATCCGCTGGACGATGAGGTCTGTGGTGAGGTTGCTGCCACTGTCAATCTGACGGAAGATGCCCCTTCTCTTGGGCTCCT s panTro1.chr19 81219157 90 + 82489036 TGTTGGTGATGATCCGCTGGACAATGAGGTCTGTGGTGAGGTTGCTGCCACTGTCAATCTGACGGAAGATGCCCCTTCTCTTGGGCTCCT s mm5.chr11 120282005 90 + 121648857 TGTTCTTGATGATCCTCTGCACAATCAGGTCTGTAGTGAGGTCACTGCCACTGTCAATCTGATAGAAGATGCCTCTTCTCTTGGGCTCCT s rn3.chr10 110017308 90 + 110733352 TGTTCTTGATGATCCTTTGCACAATCAGGTCTGTAGTGAGGTCACTGCCACTGTCAATCTGACAGAAAATGCCTCTTCTCTTGGGCTCCT s canFam1.chr18 30402100 90 + 66173745 TGTTCTTGATGATGCGCTGCACAATGAGGTCTGTGGTAAGGTCACTGCCACTGTCAATCTGACAGAAGATGCCCCTTCTCTTGGGCTCCT s galGal2.chr3_random 664190 90 + 1636275 TGTTCTTGATGATTCTTTGCACAATTAAATCTGTGGTGAGGTTGCTGCCGCTGTCCACGAGCTGGAAAATGCCACGTCTCTTTGGTTCCT s fr1.chrUn 148477614 90 + 349519338 TGTTTGCGATGATTCGCTGGACGATGTCATCAGTAGTGAGACTGTTCCCGCTATCGATGGTCCTGAATATCCCCCTCAGCCTCGGCTCCT s danRer1.chr2 4153007 90 - 32943701 TGTTCTCAATGATTCTCTGAACAATGTCGTCAGTGGTCAGATTGTTGCTGCTGTCCAGGATGCGGAAAATACCTCTTTTCTTTGGCTCCT a score=2100.0 s hg17.chr17_random 1962356 1 + 2618010 G s panTro1.chr19 81219247 1 + 82489036 G s mm5.chr11 120282095 1 + 121648857 G s rn3.chr10 110017398 1 + 110733352 G s canFam1.chr18 30402190 1 + 66173745 G s galGal2.chr3_random 664280 1 + 1636275 G s fr1.chrUn 148477704 1 + 349519338 G a score=-46319.0 s hg17.chr17_random 1962357 216 + 2618010 GGGGTCCA---GAGAGGAGGAGCGG--GATGA----AGGTC---CCTGCTGACCTCCCCAAGACCCATCTGATG-CCCTGCCCCAG---AGGGAGACCAGCGCCCAGGG--TCCCATGGGAGTGGTGC----------------------AGTCGGAG------CAGCTGC-------GCCACCATGCCCGTTTCCCAGGCA-GGCACAGTGAGTCATTAAATGGCTGGGAG----GTGCCAATGGCAACCCCTGTG-CCCAGCAAGG---GCCAGCA s panTro1.chr19 81219248 217 + 82489036 GGGGTCCA---GAGAGGAGGAGCGG--GATGA----AGGTC---CCTGCTGACCTCCCCAAGACCCATCTGATG-CCCTGCCCCAG---AGGGAGACCAGCGCCCAGGG--TCCCGTGGGAGTGGTGC----------------------AGTCGGAG------CAGCTGCG------GCCACCATGCCCGTTTCCCAGGCA-GGCACAGTGAGACATTAAATGGCTGGGA-----GTGCCAATGGCAACCCCTGTGCCCCAGCAAGG---GCCAGCA s mm5.chr11 120282096 139 + 121648857 GAGGCCTCAATGGGAAGAGAAGTGGGAGATGA---GAGGTC---TC--CTGACCACAGAGACACCC-CCAGCTGTCCCTCCACCCA---TGGGAGACCAATACC-------------AGGAAGGATG---------------------------------------GTTGC---------------ACCTACTTCCCCGA--------------------------------------------GGCAGCCCACG---CCGGGCA------------- s rn3.chr10 110017399 119 + 110733352 -------------GAAGAGAAGTGG--GAGGT---CAGGGC---TCTCTTGACCGCAAAGACAACC---------TCTGCCCATGA---TGGGAGACCAATACA-------------AGCAAGGATG---------------------------------------GTTGC---------------ACCTACTTCCCAGA--------------------------------------------GGCAGC--------CCAGGCCAGA---GCA---- s canFam1.chr18 30402191 208 + 66173745 GAAG-------GGGAGGGTGGGGGG--GAGGGGGTGAGGGCCGTCCCCCGGGCCCCGAGGACACTG---------CCCAGCCCCGGGCCTGGAGGGTCGTCACCCCCGGATGCCCAGGACATGGACGCGCAGACCCCTGCCGCCTCCTTGAGCGGGGGGGGCGTCAGCTGGGCACCGAGCCCCTA-GCCTGGCTCCCACACA-GGTGCCATGAG--------------------------------------------CCCAG---GG---ACCCTCG s fr1.chrUn 148477705 152 + 349519338 -----------GGGGGGGGGCACGG--AGCAC----AGAGG---------GGCTTCATCAAGACAC---------TCGAACTCAAA---------ACTAGAACTTTGTG--------AGG----------------------------------------------TTCGG---------------GCTTTTCTCTCACGCATATTGTATTTCCTTATCAACTAATGAAAAGAATCGTGCTTTTA-------------TTTTGAAAGGTGCGCCAACG a score=-5148.0 s hg17.chr17_random 1962573 3 + 2618010 T--GA s panTro1.chr19 81219465 3 + 82489036 T--GA s mm5.chr11 120282235 1 + 121648857 ----A s rn3.chr10 110017518 1 + 110733352 ----A s canFam1.chr18 30402399 2 + 66173745 T---G s fr1.chrUn 148477857 5 + 349519338 TGCGA s danRer1.chr2 4153169 3 - 32943701 --TTA a score=116019.0 s hg17.chr17_random 1962576 75 + 2618010 CCCACCTGGTATGGGTCGGAGCCATCCCTGTCANGGGNATAATTTCTGTCTTGCCGTGACACACCAGGTCCACCT s panTro1.chr19 81219468 73 + 82489036 CCCACCTGGTATGGGTCGGAGCCATCCCTGTCA--GGGATAATTTCTGTCTTGCCGTGACACACCAGGTCCACCT s mm5.chr11 120282236 73 + 121648857 CCCACCTGGTAGGGGTCAGACCCATCCCTGTCG--GGTACAATCTCTGTCTTCCCGTGACACACCAGGTCCACCT s rn3.chr10 110017519 73 + 110733352 CCCACCTCGTAGGGGTCAGACCCATCCCTGTCG--GGTACAATTTCTGTCTTCCCATGACACACCAGGTCCACCT s canFam1.chr18 30402401 73 + 66173745 CCCACCTGGTAGGGATCTGAGCCATCCTTGTCA--GGCACGATTTCCGTCTTCCCGTGACAGACCAGGTCCACCT s galGal2.chr3_random 664716 73 + 1636275 CTTACCTCATACGGATCAGAACCATCCTTGTCT--GGAACCACCTCAGTCATCCCATGACACACAAGAGTTACCT s fr1.chrUn 148477862 73 + 349519338 CTCACAGAATAAGGATCGACTCCGTCCTTGTCC--GGGAACACTTCCGTCTTGCCATGACACACCAGGTCCACCT s danRer1.chr2 4153172 73 - 32943701 CTCACAGCATAAGGGTCGGTTCCATCTGCGTCA--GGAAATACATTGGTTTTCCCATGACACACCAGATCCACCT a score=3154.0 s hg17.chr17_random 1962651 15 + 2618010 GGAGNAAGGAGTGGG s panTro1.chr19 81219541 14 + 82489036 GGAG-AAGGAGTGGG s mm5.chr11 120282309 14 + 121648857 GGAA-AGGGAGCAAG s rn3.chr10 110017592 14 + 110733352 GGAA-AGGGAGTAGG s canFam1.chr18 30402474 13 + 66173745 GCGA-AGGGAGC-GG s galGal2.chr3_random 664789 15 + 1636275 GGAGAGAGGTACAAC s fr1.chrUn 148477935 15 + 349519338 GCAGAGACGAGAGGG a score=-15504.0 s hg17.chr17_random 1962666 85 + 2618010 GTCA-----------GGAGCCCTCCCCGGGGAGGC--AGCGGCCGTCGCCACCCAC---AGCCCAGCACAGGCCCCGGGGGNTTNGGGAGAGCTGAC--------CCTG s panTro1.chr19 81219555 83 + 82489036 GTCA-----------GGAGCCCTCCCCGGGGAGGC--AGCGGCCGTCGCCACCCAC---AGCCCAGCACAGGCCCCGGGGG--TTGGGAGAGCTGAC--------CCTG s mm5.chr11 120282323 80 + 121648857 GTCA-----------GGAGACTTCCTCAGAGTTGCTATGCCACCACTGACAACCACTTAGGGCTAGCCCAAACCCC----------AAAAAACTGGC--------CCAG s rn3.chr10 110017606 52 + 110733352 GACA-----------GTTGACTCCTCTGAGTTGAT-------------------AT---------GCCTGGACCTA----------AGAAAACTGGC--------CCAG s canFam1.chr18 30402487 20 + 66173745 GTCA-----------GG------------------------------------------------GCCCTGGCGCC----------------CTG-------------- s galGal2.chr3_random 664804 98 + 1636275 GTCACCGACACCATCACATCCCTCCAGAAGGTGACGGTAACGCCCACTGCACCCAC-TGAGCAGAGCTGGGAATGA----------GAAACACCAACACCCAGAACCTG a score=-8968.0 s hg17.chr17_random 1962751 73 + 2618010 ---CCCTTTCCTCAGCCCAGGTACCTCCTGGG-NCCCCGCCTAGGAGCCC-----ACAGCCAGCCTGCATTCCCAGCCCATG s panTro1.chr19 81219638 72 + 82489036 ---CCCTTTCCTCAGCCCAGGTACCTCCTGGG--CCCCGCCTAGGAGCCC-----ACAGCCAGCCTGCATTCCCAGCCCATG s rn3.chr10 110017658 55 + 110733352 ----------GCTGGCGCAGGCA------GGA----------AGGAGCCTCTGGGAATGTCGGTCGGCA-TCATGGTCTGTT s canFam1.chr18 30402507 13 + 66173745 -------------------------------------CACTCAGAGGCCC-------------------------------- s galGal2.chr3_random 664902 79 + 1636275 GAGGCTCAGCCTCCATCCAGAGCTCCCCTGCACACACTGAGCAGGACCCC---TCACTGCTCTGCTGCTCTCCAGTGCCATT a score=-2209.0 s hg17.chr17_random 1962824 30 + 2618010 CAGGAANCAGAGGTGAACAGAGGGAACGAG s panTro1.chr19 81219710 29 + 82489036 CAGGAA-CAGAGGTGAACAGAGGGAACGAG s rn3.chr10 110017713 9 + 110733352 CAGGAG------------------GAC--- s canFam1.chr18 30402520 14 + 66173745 -------TCGGGGGGACCTGG--------- a score=15.0 s hg17.chr17_random 1962854 5 + 2618010 GTGAG s galGal2.chr3_random 665018 5 + 1636275 GTACA a score=512.0 s hg17.chr17_random 1962854 5 + 2618010 GTGAG s panTro1.chr19 81219739 5 + 82489036 GTGAG s galGal2.chr3_random 665018 5 + 1636275 GTACA a score=30.0 s hg17.chr17_random 1962859 6 + 2618010 --CCCATG s panTro1.chr19 81219744 6 + 82489036 --CCCATG s mm5.chr11 120282459 6 + 121648857 --TTTGAG s rn3.chr10 110017722 6 + 110733352 --TTCAAG s canFam1.chr18 30402534 6 + 66173745 --CCCACC s galGal2.chr3_random 665023 8 + 1636275 TCCATACA a score=4042.0 s hg17.chr17_random 1962865 6 + 2618010 CGGAGC s panTro1.chr19 81219750 6 + 82489036 CAGAGC s mm5.chr11 120282465 6 + 121648857 CGAAGC s rn3.chr10 110017728 6 + 110733352 CGAAAC s canFam1.chr18 30402540 6 + 66173745 AGGAGC s galGal2.chr3_random 665031 6 + 1636275 CAAAGA s danRer1.chr2 4154360 6 - 32943701 CAGTAC a score=60450.0 s hg17.chr17_random 1962871 37 + 2618010 CTCACCTTGAAGTGACTTAGGAGCTCTGCTGTGACCG s panTro1.chr19 81219756 37 + 82489036 CTCACCTTGAAGTGACTTAGGAGCTCTGCTGTGACCG s mm5.chr11 120282471 37 + 121648857 CTCACCTTGAAGTGATTCAGGAGCTCCGCTGTCACGG s rn3.chr10 110017734 37 + 110733352 CTCACCTTGAAATGATTCAGGAGCTCTGCTGTGACGG s canFam1.chr18 30402546 37 + 66173745 CTCACCTTGAAGTGGTCCAGGAGCTCTGCCGTGACAG s galGal2.chr3_random 665037 37 + 1636275 CTCACCTTGAAGTGATCCAGCAGATCAGCAGTGACAG s fr1.chrUn 148478038 37 + 349519338 CTCACCTTAAAATGATCCAGCAGGTCTTTGCCGACTG s danRer1.chr2 4154366 37 - 32943701 TGTACCTTAAAGTGATCCAGAAGATCTTTTTCGACAG a score=41544.0 s hg17.chr17_random 1962908 31 + 2618010 CGTACGGGGCTCCAATCACCACTTCTGACAC s mm5.chr11 120282508 31 + 121648857 AGTATGGTGCCCCAATCACCACTTCTGAAAC s rn3.chr10 110017771 31 + 110733352 AGTACGGTGCCCCAATCACCACTTCTGAAAC s canFam1.chr18 30402583 31 + 66173745 CGTAGGGGGCCCCGATCACCACCTCTGACAC s galGal2.chr3_random 665074 31 + 1636275 CATAGGGGGCTCCAATCACCACTTCTGAGAC s fr1.chrUn 148478075 31 + 349519338 CGTACGGCGCACCGATCACCACCTCTGAGAC s danRer1.chr2 4154403 31 - 32943701 CGTACGGAGCCCCGATGACAACCTCAGACAC a score=11252.0 s hg17.chr17_random 1962939 5 + 2618010 GTACT s panTro1.chr19 81219893 5 + 82489036 GTACT s mm5.chr11 120282539 5 + 121648857 ATACT s rn3.chr10 110017802 5 + 110733352 ATACT s canFam1.chr18 30402614 5 + 66173745 GTACT s galGal2.chr3_random 665105 5 + 1636275 ATACT s fr1.chrUn 148478106 5 + 349519338 GTACT s danRer1.chr2 4154434 5 - 32943701 GTACT a score=100.0 s hg17.chr17_random 1962944 1 + 2618010 G s danRer1.chr2 4154439 1 - 32943701 G a score=2538.0 s hg17.chr17_random 1962944 67 + 2618010 GTGGGGACAGTGGGGGCAGAAAGACTTG--CTCGGTCCCTGCTACTG-GTAAGCC--AGGGCCACAGGGTGG s panTro1.chr19 81219898 66 + 82489036 GTGGGGAC-GTGGGGGCAGAAAGACTTG--CTCGGTCCCTGCTACTG-GTAAGCC--AGGGCCACAGGGTGG s mm5.chr11 120282544 69 + 121648857 GCGGAAACACAGCCAGTGAAGCACCTCA--CTCAGTCCTCATCCCTG-GCGAGCTAGAGGGCTAGAGCGTGG s rn3.chr10 110017807 61 + 110733352 GCAGAAACACAGCC------ACAGCTCA--CTCAGTCCTTGTCCCTG-GTGAGCT--GGGGCTAGAGGGTGG s canFam1.chr18 30402619 18 + 66173745 ACGGGGAC-------------------------------------------------AGGAGCACAG----- s fr1.chrUn 148478111 61 + 349519338 GGGGAGAG---------AAAAAGACTGGTTCTCAACAACCATGACTGAGCGGACG--AGGAACAAATGGTGG a score=-17784.0 s hg17.chr17_random 1963011 293 + 2618010 TGAGAGACGGCTCAGACATGGGGCGGGGCTGCCAGTGAGTAGCAGGG----ATGGGCTGGGCAGGCTG-----GGGACCCCTNGGGGCTCCTCCATGAGACAAGAAGGAACAGCATCTGGAGACCTGACCACCCCTCCTCATGCCTCAACAAACAGGTATGGGCAGGTGCCACAGAACTCGGGGTGCTGGGTGCAGCTCTGCCAGTGACCCAAGCCCCCCTGCCCTGGCTCAGGGAGGCCCTTAGTAGGGGGGANTGTTGNTNGGNGAATGTCTCCCCATCCTTGGGCTGGCTCCTGGCCCC s panTro1.chr19 81219964 288 + 82489036 TGAGAGACGGCTCAGACATGGGGCGGGGCTGCCAGTGAGTAGCAGGG----ATGGGCTGGGCAGGCTG-----GGGACCCCT-GGGGCTCCTCCATGAGACAAGAAGGAACAGCATCTGGAGACCTGACCACCCCTCCTCATGCCTCAACAAACAGGTATGGGCAGGTGCCACAGAACTCGGGGTGCTGGGTGCAGCTCTGCCAGTGACCCAAGCCCCCCTGCCCTGGCTCAGGGAGGCCCTTAGTAGGGGGGA-TGTTGT---GGGAATGTCTCCCCATCCTTGGGCTGGCTCCTGGCCCC s mm5.chr11 120282613 136 + 121648857 CAGAGGA-------------GGCCAGGGGAGCCAGCAGG--GCAGGGCGACACGGCCAGGGCCAGTGGGCAAAGGGGACCCT-CAGACTCCTTCAGCAGGGGA-AAGAAACTGCACCCAG----------------------------------------------------------TAGGG--------------------------CCCAGCCGCCCGGCCCTGACTC--------------------------------------------------------CCAGTT--------- s rn3.chr10 110017868 119 + 110733352 CAGAAGA-GGTCCAGG---GGAGTGGGGCAGCATG------GCTGGG----GCCGGCAGGGAAAG--------GGGACCCCC-TGGACTCCT--------------------------------------------------------------CAGTATGGGGAA-------AGAAACTGTA--------------------------CCCAATCGCCTTGCCCTGGCTC--------------------------------------------------------CCAGTC--------- s canFam1.chr18 30402637 71 + 66173745 -----------------------------------------GCC-------ATTAGC--------------------------GGGACTCCGCCAGG---------------------------------------------------------------------------------TCGGG------------------CCCGTGCACCAGGGTCCTCACTGCCGCACC--------------------------------------------------------CCAGCA--CGGCCCA a score=4011.0 s hg17.chr17_random 1963304 2 + 2618010 CA s panTro1.chr19 81220252 2 + 82489036 CA s mm5.chr11 120282749 2 + 121648857 CA s rn3.chr10 110017987 2 + 110733352 CA s canFam1.chr18 30402708 2 + 66173745 CA s galGal2.chr3_random 665677 2 + 1636275 CA s danRer1.chr2 4158529 2 - 32943701 CA a score=156294.0 s hg17.chr17_random 1963306 88 + 2618010 CTCACCCGGCAGGCCAGCACGCTCAGAGTCCGTTCATGCAGATTCATGATGGGGTAGTTCTTCCCCNTTGTAGTG-ATTGACCTCCTGC s panTro1.chr19 81220254 87 + 82489036 CTCACCCGGCAGGCCAGCACGCTCAGGGTCCGCTCATGCAGATTCATGATGGGGTAGTTCTTCCCC-TTGTAGTG-ATTGACCTCCTGT s mm5.chr11 120282751 87 + 121648857 CTTACCCGGCAGGCCAGCACACTGAGAGTCCGCTCGTGCAGGTTCATGATGGGGTAGTTCTTGCCC-TTGTACCG-GTTTACTTCCTAG s rn3.chr10 110017989 87 + 110733352 CTTACCCGGCAGGCCAGCACACTGAGAGTCCGCTCATGCAGGTTCATGATGGGGTAGTTCTTGCCC-TTGTACCG-GTTTACTTCCTAG s canFam1.chr18 30402710 87 + 66173745 CTCACCCGGCACGCCAGCACGCTTAACGTCCGCTCATGCAGGTTCATGATGGGGTAGTTCTTCCCC-TTGTAGTG-GTTGACCTCCTAG s galGal2.chr3_random 665679 87 + 1636275 CTTACCCTGCAAGCCAAGACACTGAGCGTTCTCTCGTGGATGTTCATGATGGGATAGTTCTTCCCT-TTGTAACG-ATTTACTTCCTAA s fr1.chrUn 148478283 87 + 349519338 CTCACCCGACAGGCCAAGACACTCAGCGTCCTCTCATGGATGTTCATGATGGGATAGTTCTTCCCC-TTGTACCG-ATTCACTTCCTGG s danRer1.chr2 4158531 89 - 32943701 CTTACTCTGCAAGCGAGCACACTCAAGGTTCGCTCGTGAATATTCATGATGGGGTAGTTTTTCCCCTTTGAAACGCGTTCACTTCCTAC a score=2491.0 s hg17.chr17_random 1963394 16 + 2618010 GGCCAGAGTGCGGCTA s panTro1.chr19 81220341 16 + 82489036 GGCCAGAGTGAGGCTA s mm5.chr11 120282838 14 + 121648857 GGCC--AGTGAGTTTG s rn3.chr10 110018076 14 + 110733352 GGCC--AGTGAGTTTG s canFam1.chr18 30402797 16 + 66173745 GGCCGGAGCGAGCTTG s galGal2.chr3_random 665766 16 + 1636275 GGCAAAGCAGCAGTCA s fr1.chrUn 148478370 16 + 349519338 AGGGAGGAAACAGATG a score=2727.0 s hg17.chr17_random 1963410 3 + 2618010 GCT s panTro1.chr19 81220357 3 + 82489036 GCT s mm5.chr11 120282852 3 + 121648857 GCT s rn3.chr10 110018090 3 + 110733352 GCT s canFam1.chr18 30402813 3 + 66173745 GGT s fr1.chrUn 148478386 3 + 349519338 GTT a score=64776.0 s hg17.chr17_random 1963413 264 + 2618010 CAGCCCGGAGACTTTTTGGGGGGACAGGGTGTGC-----------CCCTCCCGGNCTGTCCCTCATGGGAAGAAGTCGGGGAGGTTGCTC-------GCCCTTGTGGGGATGCCCCAGACAGGACAGCCCTGGACCCCAGAAGCCTAC--NGATCACCCCCCAGGGTCTCCTGTGACTTCACC--NTGGGGCCCCTTC------CCAGAGACCACCTGCACCTAACAGCAACGCT--TAGGGCCCCTCGAG---------GGCCCATCAGCTGCCCAGGGGC-------CCA------GGGAGCAAGAAGGCAGTG s panTro1.chr19 81220360 261 + 82489036 CAGCCCGGAGACTTTTTGGGGGGACAGGGTGTGC-----------CCCTCCCGG-CTGTCCCTCATGGGAAGAAGTTGGGGAGGTTGCTC-------GCCCTTGTGGGGATGCCCCAGACAGGACAGCCCTGGACCCCAGAAGCCTAC---GATCACCCCCCAGGGTCTCCTCTGACTTCACC---TGGGGCCCCTTC------CCAGAGACCACCTGCACCTAACACCAACCCT--TAGGGCCCCTCGAG---------GGCCCATCAGCTGCCCAGGGGC-------CCA------GGGAGCAAGAAGGCAGTG s mm5.chr11 120282855 272 + 121648857 CAGCTGGGGGACCTC------AAATGAATGGTGC--------CTTCCCTCCCAG-CTGGCCGTCGTGGGCAGAAGCTGGGAAAAGTGCCC-------CCTCTCATAGGAACACCCTAGGCAGGGCTGTCCTGGACTCCAGAAGAGAGC-------------CAAGCTTGCCTTCGCAGGCACC---TGGAGCCTCCTCAGTCCTTCAGAGGCCACCTGTGCCCAACACTGACCCCAGCAAGGCCCCTTGAGGGACCCCATGGCCCATCAGCTGACGGGGTGCTGAGAAGCAA------GCAAGGAGGAGGGCAGAG s rn3.chr10 110018093 279 + 110733352 CAGCTGGAGGACCTC------AAATGAATGGTGC--------CTTCCCTCCCAG-CTGGCTGTCATGGGCAGAAGCTGGGAAAAGTGCCC-------CCTCTCATAGGAACACCCTAGGTAGGGCTGTCCTGGACTCCAGAAGAGAACCAAGCTTGCCTTCGATAGGCACCTG---------------GAGCCTCCTCACTCCTTTAGAGGCCACCTGTGCCCAACACTGACCCCAGCAAGGCCCCTTGAGGGACCCCATGGCCCATCAGCTGATGGGGTGCTGAGAAGCAAACAAGGAGGAGGAGGAGGGCAGAG s canFam1.chr18 30402816 248 + 66173745 CAGCGCGCAGCCCC-------GGGCAGTGGGGGCGGAGCTGTCATCGCCCCCAA-AAGCCCCTCATGGGTGCTCCTCATGGGTGCTCCTCATGGGTGCTCCTCATGGGTGCCCACGGGGGGGGGAAGCCCTGGTCCCCAGGAAGTGGC---------CCCGGGTTGTCTCCTCTTCCATCAGCACCCAAGGCCTCACC------CCGTGGGCCACCTGTGCCCAACCTCAACCCC--AGGAGCCACTCAAGGG-------GGCCCCAC------------GCT------CCA------------------TCCGAG a score=170253.0 s hg17.chr17_random 1963677 89 + 2618010 ACCTGGTCAAAGTGTAAGCCCGCGATGATGTAGGGCCTCTCTGCCAGCCTGTGCACCTTCTCCANGGAAGTCCACATGCCCGATGTCTG s panTro1.chr19 81220621 88 + 82489036 ACCTGGTCAAAGTGTAAGCCTGCGATGATGTAGGGCCTCTCTGCCAGCCTGTGCACCTTCTCCA-GGAAGTCCACATGCCCGATGTCTG s mm5.chr11 120283127 88 + 121648857 ACCTGGTCAAAGTGTAGGCCGGCGATGACGTAGGGCCTCTTGGCTAGCTTGTGCACCTCCTGTA-GGAAGTCCACGTGCCCGATGTCTA s rn3.chr10 110018372 88 + 110733352 ACCTGGTCAAAGTGTAGGCCGGCGATGACGTAGGGCCTCTTGGCTAGCTTGTGCACCTCCTGTA-GGAAGTCCACGTGCCCGATGTCTA s canFam1.chr18 30403064 88 + 66173745 ACCTGGTCAAAGTGCAGGCCGGCGATGACGTAGGGCCTCTCTGCCAGGCCATGCACCTTCTCCA-GGAAGTCCACGTGGCCGATGTCTG s galGal2.chr3_random 665939 88 + 1636275 ACCTGGTCAAAGTGCAGCCCAGCAATGATGTAGGGTCTCTCTGCCAGCTGGTGAACCTTCTCCA-GGAAATCTACATGCCCAATATCTG s fr1.chrUn 148478454 88 + 349519338 ACCTGGTCAAAGTGCAGACCTACGATGACGTAGGGCCTCTCCGCCTGCTTATACACCATTTCCA-GGAAGTCAACATGGCCGATGTCTG s danRer1.chr2 4159106 88 - 32943701 ACCTGGTCAAAGTGCAGTCCGACGATGACGTAAGGTTTCTCTGCTTGTCTGTGAACCGTCTCAA-GGAAATCCACATGACCGATGTCTT a score=12838.0 s hg17.chr17_random 1963766 18 + 2618010 CACCCAGGTTAAGAAGCA s panTro1.chr19 81220709 18 + 82489036 TGCCCAGGTTAAGAAGCA s mm5.chr11 120283215 18 + 121648857 TATCCAGATTAAGAAGCA s rn3.chr10 110018460 18 + 110733352 TATCCGGATTAAGAAGCA s canFam1.chr18 30403152 18 + 66173745 TGTCCAGGTTAAGAAGCA s danRer1.chr2 4159194 13 - 32943701 --TACGGGTCAAACA--- a score=100.0 s hg17.chr17_random 1963766 1 + 2618010 C s fr1.chrUn 148478542 1 + 349519338 C a score=1910.0 s hg17.chr17_random 1963784 2 + 2618010 GT s panTro1.chr19 81220727 2 + 82489036 GT s mm5.chr11 120283233 2 + 121648857 GT s rn3.chr10 110018478 2 + 110733352 GT s danRer1.chr2 4159207 2 - 32943701 GT a score=329.0 s hg17.chr17_random 1963784 6 + 2618010 GTCGGG s danRer1.chr2 4159207 6 - 32943701 GTCAAG a score=-114.0 s hg17.chr17_random 1963786 1 + 2618010 C s rn3.chr10 110018480 1 + 110733352 A a score=100.0 s hg17.chr17_random 1963786 1 + 2618010 C s panTro1.chr19 81220729 1 + 82489036 C a score=874.0 s hg17.chr17_random 1963787 3 + 2618010 GGG s panTro1.chr19 81220730 3 + 82489036 GGG s rn3.chr10 110018679 3 + 110733352 GAG s danRer1.chr2 4159210 3 - 32943701 AAG a score=-5525.0 s hg17.chr17_random 1963790 37 + 2618010 ATGGGGATGAC--------AGGGAGCAGC--------------------------TCCCTGACAGCTCATG s panTro1.chr19 81220733 37 + 82489036 ATGGGGATGAC--------AGGGAGCAGC--------------------------TCCCTGACAGCTCATG s rn3.chr10 110018682 71 + 110733352 AAGGGGAAAACAACAATCAAGGTAGCAGTGTTGGGCTGGTAAGGAAGGGACTCGGTCCACAACAGCCTGTA s canFam1.chr18 30403170 31 + 66173745 AGTAACAAGAT--------AGGGAGTGGC--------------------------TGCCTGCAGG------ s danRer1.chr2 4159213 13 - 32943701 ---GCCAAAAC--------ACACA----------------------------------------------- a score=1751.0 s hg17.chr17_random 1963827 67 + 2618010 CCCAAGGGCCTCCCCGCCATCCTCCCTGCTGACAGCTGCTCCCCTGCAAACCAGCCAGCCCAGTCTG----- s panTro1.chr19 81220770 67 + 82489036 CCCAAGGGCCTCCCCGCCATCCTCCCTGCTGACAGCTGCTCCCCTGCAAACCAGCCAGCCCAGTCTG----- s mm5.chr11 120283469 64 + 121648857 CCCAAGGGACCCCGTGCCATTCTCCCTGGTGAAGGCCGCACCCAC---CACAACCCAGCTCAACCCT----- s rn3.chr10 110018753 54 + 110733352 CCCAAGGGACTCCGGGTCATTCTTCCCGACCAAGCCCGTACCCAC---TACCACCC----------T----- s canFam1.chr18 30403201 43 + 66173745 -ACCAGGGCCTCT--------------------AGCAGGGCCCCT---CGAGCTCCGCCCCAGCCCG----- s danRer1.chr2 4159226 64 - 32943701 ---ACCAGCCTTTTCACCACTCAAATTCTAAATGACTGAATTTCT-----TGAGTCTTTCCAAGTTTTTTTT a score=1217.0 s hg17.chr17_random 1963894 36 + 2618010 GGGGCCCCAAGGAGTCAAGTGAGGC--CCCCGGGTCCC s panTro1.chr19 81220837 36 + 82489036 GGGGCCCCAAGGAGTCAAGTGAGGC--CCCCAGGTCCC s mm5.chr11 120283533 24 + 121648857 GGAGCCT------------TGGAGG--CTATGGGTCCC s rn3.chr10 110018807 24 + 110733352 GGAGCCT------------TAGAGT--CTATGGGTCCC s canFam1.chr18 30403244 37 + 66173745 GGGGCCTCGAAGAGTCAG-TGAGGCTGCTCTGGGTCCC s fr1.chrUn 257714030 36 - 349519338 GGAGTCAAAAAAAATCAAACGATGG--CAAAGTTTCAG s danRer1.chr2 4159290 27 - 32943701 GGATTTCTTCAGCGGCAT-TCAGGC--TTT-------- a score=0.0 s hg17.chr17_random 1963930 34 + 2618010 ACCCCATGTGGCACATGTAGGGGAGCAGCAGAGG a score=-7498.0 s hg17.chr17_random 1963930 26 + 2618010 ---ACCCCATGTGGCAC---ATGTAGGGGAG----------C s panTro1.chr19 81220873 26 + 82489036 ---ACCCCATGTGGCAC---ATGTCGGGGAG----------C s mm5.chr11 120283557 24 + 121648857 ---ACTC--TGAGGCAT--GACTTCGGGCAG----------- s rn3.chr10 110018831 23 + 110733352 ---ACTC--TGTGGCAT--GACTTGAGG--G----------T s canFam1.chr18 30403281 42 + 66173745 CTGACCCCAGGGTGCATAGGGGGCCAGGCAGGGCAACCCTCC s fr1.chrUn 257714066 19 - 349519338 ---ATCTCTTGTTGAAT---CTGTC----------------- a score=860.0 s hg17.chr17_random 1963956 8 + 2618010 --AGCAGAGG s panTro1.chr19 81220899 8 + 82489036 --AGCAGAGG s rn3.chr10 110018854 8 + 110733352 --AGCAGAGG s canFam1.chr18 30403323 8 + 66173745 --CACACGGT s galGal2.chr3_random 666449 8 + 1636275 --AACAGAGT s fr1.chrUn 257714085 9 - 349519338 CTCATGGAA- a score=-5781.0 s hg17.chr17_random 1963964 6 + 2618010 CCCAGA- s panTro1.chr19 81220907 6 + 82489036 TCCAGA- s mm5.chr11 120283581 4 + 121648857 --CAGA- s rn3.chr10 110018862 5 + 110733352 T-AGTA- s canFam1.chr18 30403331 6 + 66173745 CTCGGA- s galGal2.chr3_random 666457 3 + 1636275 C---AA- s danRer1.chr2 4159317 6 - 32943701 -TTAAAA a score=293975.0 s hg17.chr17_random 1963970 148 + 2618010 GGATACGGAACAGGTCGAAGGCACCAGCCACATAGATGACTGTCTCCCCTGGCTGGGGCTCCTTCCCAGNAAGCAAACTGGATGATCTTCTGAGATGTCTGCAGGAACTGGGATACCCCGGTCCAGGGGTTCCGCCCACCAGGGCACT s panTro1.chr19 81220913 147 + 82489036 GGATACGGAACAGGTCGAAGGCACCAGCCACATAGATGACTGTCTCCCCTGGCTGGGGCTCCTTCCCAG-AAGCAAACTGGATGATCTTCTGAGATGTCTGCAGGAACTGGGATACCCCGGTCCAGGGGTTCCGCCCACCAGGGCACT s mm5.chr11 120283585 147 + 121648857 GGATACGGAACAGGTCAAAGGCACCAGCCACATAGATGACCGTCTCCCCGGGCTGGGGCTCCTTCCCAG-AAGCAAACTGGATGATCTTCTGGGATGTCTGTAGAAACTGGGACACCCCTGTCCAGGGGCTCTGCCCCCCAGGGCACT s rn3.chr10 110018867 147 + 110733352 GGATACGGAACAGGTCAAAGGCACCAGCCACATAGATGACTGTCTCCCCGGGCTGGGGCTCCTTCCCAG-AAGCAAACTGGATGATCTTCTGGGATGTCTGTAGGAACTGGGACACCCCTGTCCAGGGGCTCTGCCCCCCAGGGCACT s canFam1.chr18 30403337 147 + 66173745 GGATACGGAACAGGTCAAAGGCGCCGGCCACGTAGATGACCGTCTCCCCTGGCTGGGGTTCCTTCCCAG-AAGCAAACTGGATGATCTTCTGAGATGTCTGCAGAAACTGGGACACCCCCGTCCAGGGGTTCCGTCCCCCGGGGCACT s galGal2.chr3_random 666460 147 + 1636275 GGATACGGAACAGGTCAAAGGCTCCGGCCACGTAGATGATAGTATCTCCTGGCTGTGGTTCCTTCCCTG-ATGCAAACTGGATGATCTTCTGAGATGTCTGCAGGAACTGCGAGACACCGGTCCAAGGACTATGACCCTTTGGTCCCT s fr1.chrUn 148478615 147 + 349519338 GGATACGGAAGAGGTCAAACGCTCCAGCCACATAGATGATGGTGTCCCCAGGCTGCGGCTCCGCCCCCG-AAGCAAACTGGATGATCTTCTGGGATGTCTGGAGGAACTGAGACACCCCCGTCCACGGACTGTGCGTCCCAGGACCCT s danRer1.chr2 4159323 147 - 32943701 GGATACGGAAGAGGTCGAACGCTCCCGCCACATATATGATGGTGTCTCCTGGCTGCGGCTCTTTTCCAG-AGGCGAACTGGATGATCTTTTGAGACGTCTGCAGGAACTGAGAGACGCCGGTCCATGGGCTGTGTCCTTTAGGACCCT a score=100.0 s hg17.chr17_random 1964118 1 + 2618010 G s danRer1.chr2 4159470 1 - 32943701 G a score=6857.0 s hg17.chr17_random 1964118 19 + 2618010 -GCAAGCCAAGAG--------------AGGGAGC s panTro1.chr19 81221060 19 + 82489036 -GCAAGCCAAGAG--------------AGGGAGC s mm5.chr11 120283732 19 + 121648857 -GTTAGTCAAGAG--------------AAGGAAC s rn3.chr10 110019014 19 + 110733352 -GTTCGTCAAGAG--------------AAGGAAC s canFam1.chr18 30403484 33 + 66173745 -GAAAGCCAAGAGGCCTCTGGTCAGCCAAGACGC s fr1.chrUn 148478762 19 + 349519338 TGAATGCGGAAA---------------AGGACGC a score=266103.0 s hg17.chr17_random 1964137 706 + 2618010 AGGTTGG---------CGG-------------GGGAGGCCT---------CCCAGG------TGCTGC--CCT------------------------------CACCAGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCAAACCCTCAGCTGTC----ACCTGCCAGCA----------ATCCCATTTCCAGCCAGTCATCTCGGGCAG----------GGGACACACT---GCCAGGCCA-----------GGTGGCAGGTGGGAC-TGTGGCGCCACCCCACAACCACAGCAGGCACCGCAGCAGACACCACTTCAGCCCAGCAAGCGACCACCAGGAGGAGGCAAGGAGCCCTGTGGCAGGTGCACACAGCCCTTGGGAGGGACCTGGTACCCTGAGACCACTGTCTGGTCACCTGGGAGCAGCCTTCTGAGGAAAGTATGTCCCCGGCGGGTATCGGGTGAGGGGGCTACAATGGGAGAGAGGGCCAGGCCACTTGGTTAGAGGCCACCTGNTCCACAGGCAAATCCTTGCTCCTCC---AAGCAGTGGCTGCCGTGACCGGCCAGCCGGTGCCACCACCCGCCTGCCCTCCCTCCCAGCATCCACCAGTGAGCCAAACCTGGCAGTCAGTGCCTGGTCAGTGCCAGGGAC-AGAGG----GAGGAGGG-------TGAGGCTCTGGGCTGGCCTTTCCCCAAGGGATGGCTGGGACAGGTGGCCGGGGGAGCCCCCTGCAGCTGCGT----GCTCAGCTCTCCCTGCA------------------CAGCCGCACTCACCTTGCCAAAACTGTCTGCATACTCCCGGTACTCANGAGGACATCTCCTGCACAGAAGGTCAGAGCAGGGCT s panTro1.chr19 81221079 707 + 82489036 AGGTTGG---------CGG-------------GGGAGGCCT---------CCCAGG------TGCTGC--CCT------------------------------CACCAGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCAAACCCTCAGCTGTC----ACCTGCCAGCA----------ATCCCATTTCCAGCCAGTCACCTCGGGCAG----------GGGACACACT---GCCAGGCCA-----------GGTGGCAGGTGGGAC-TGTGGCGCCACCCCACAACCACAGCAGGCACGGCAGCAGACACCACTTCAGCCCAGCCAGCAACCACCAGGAGGAGGCAAGGAGCCCTGCGGCAGGTGCACACAGCCCTTGGGAGGGACCTGGCACCCTGAGACCACTGTCTGGTCACCTGGGAGCAGCCTTCTGAGGAAAGTATGTCCCCGGCGGGTATCGGGTGAGGGGGCTACAATGGGAGAGAGGGCCAGGCCACTTGGTTAGAGGCCACCTG-TCCACAGGCAAATCCTTGCTCCTCCTCCAAGCAGTGGCTGCCGTGACCGGCCAGCCGGTGCCACCACCCGCCTGCCCTCCCTCCCAGCATCCACCAGTCAGCCAAACCTGGCAGTCAGTGCCTGGTCAGTGCCAGGGAC-AGAGG----GAGGAGGG-------TGAGGCTCTGGGCTGGCCTTTCCCCAAGGGATGGCCGGGACAGGTGGCCGGGGGAGCCCCCTGCAGCTGCGT----GCTCAGCTCTCCCTGCA------------------CAGCCGCACTCACCTTGCCAAAACTGTCTGCATACTCCCGGTACTCA-GAGGACATCTCCTGCACAGAAGGTCAGAGCAGGGCT s mm5.chr11 120283751 823 + 121648857 CAGTCAG---------TGG-------------TAGAGGCCT----------CTATG------TGTGCC--CCT------------------------------CACCCAGTACCCTC-------------------------------------------------------------------CCCTTGGTCATTCTTCTGGGCCCAGGGCTCCCTGTGCCCCTGTCGTAGGTGTGGGTGATGGGAGTTGCACAGAGCATTACAGGCTGGA---CTCCCCCAAACCCCAGCCTGTCAATAACCCAGCAGCAC---AGCTGGGGGCTGTGTCCAGGCAGGCACTTGGGGCAGG-----GGCAGGGACACACCATGGTAAGGCCACGCAGGACCACTGTAGCTAGCAGGAC-TGTGGCTCCACCCGGTGGCCACAGAAGATAATGCAGTCAACACCAGCTCTGCCTGGCAA--CACCACCAGGAGCAGGCGCAGAGCCCAGTGGCCAGCAGACACAGCCCTCTGG-GGGACCCGGCACCCTGAGGCCACCATCTGGTCACCTGGGAGGAGACTTCTGAGGAAAGTGTGTCCCCGGCAGGTGTCGGGTGAGGGGGCTACAAAGGGAGAGAGGGCCAGGCCATTTGGTTAGATGCCACCTG-TAAGGTGGGCAGTCCTTGCTCCTCCTCCAAGAAGTGGCTGCTGGGACTG----------GCCACCTCTTGCCTGTCCTCCCTCCCAGCATCCACTAGCTGGCCAAGCCTGATGGTCAGTACCTGGTCAGCACTGGGAAAGAGAGG----GAGGAGGGCAGACACTGAAGCTTTGGGCCAACCTTTCCCCATGGGACGCCT--AACGGGTGGGTGGGAATGTCAACTGGATTTCCAG----AGTGGCCTCAGCGAGCC------------------AGGCTGTACTCACCTTTCCAAAACTGTCAGCATATTCCCGGTACTCA-GAGGACATCTCCTGCACACAAGGGCAAGAAA---CT s rn3.chr10 110019033 850 + 110733352 CAGTCAG---------T-G-------------TAGAGGCCT----------CTATG------TGCGCC--CCT------------------------------CACCCAGAACCCTCCCCTTGGTCATTCTTCTGAGCCCAGGGCTCCCTGTGCCCCTATTGTAGGTGTGGGTGATGGGAGATG-----------------------------------------------------------------TGCCGAGAGCATTACAGGCT--GGACTCCCCCCCAACCCCAGCCTGCA---AATAACCCAGCAGCACAGCTGGGCGCTATGTCCAGGCAGGCACATGGGGCAAG-----GGCAGGGACACACCATGGTAAGGCCAAGCAGGACCACTGTAGCTAGCAGGAC-TGTGGCTCCACCCGGTGGCCACAGAAGATACTGCAGTCAAGACCAGCTCTGCCTAGCAACACGCCACCAGGAGCAGGCGCAGAGCCCAGTGGCCAGCAGACACAGCCCTCTGG-GGGACCCGGCACCCTGAGGCCACCATCTGGTCACCTGGGAGGAGACTTCTGAGGAAAGTGTGTCCCCGGCAGGTGTCGGGTGAGGGGGCTACAAAGGGAGAGAGGGCCAGGCCATTTGGTTAGATGCCACCTG-TAGGTGGGC-AGTCCTTGCTCCTCCTCCAAGAAGTGGCTGCTGGGACTG----------GCCACCTCTTGCCTGTCCTCCCTCCCAGCATCCACTAGCTGGCCAAGCCTGATGGTCAGTACCTGGTCAGCACTGGGAAAGAGAGG----GAGGAGGGCAGACACTGATGCTCTGGGTCAACCTTTCCCCATGGGAAGCCTAAGGGAGGTGGGTGGGGTTGCTGCCTGGAGGCTAGTTAAATGTCGGCTGTACTTGCAGAATGGCCTCAGTAAGGCAGGCTGTACTCACCTTGCCAAAACTGTCAGCATATTCCCGGTACTCA-GAGGACATCTCCTGCACACAAGGGCAAGAGA---CT s canFam1.chr18 30403517 678 + 66173745 CGGTCAGGCACGTCCTTGGCCTCTTCCCACCCCAGAGCCCCTCCTCTGGGCCTAGGGCTGCCTGCGCCTGCCTGTCGGCTCTGGGAGCAGCTACGGGCTGATACACCAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGACCCCCATCGCCCCCACACCTGCCCGCAG---------AGCCCA----CAGGCAGGCGCCTCTGGCAGGAACATGCCAGGGCCAGGCTGGGCCAGGGCCC-----------CGTGACCAGTGGGACGTGTGGCTTTGCCCTGTGACCACAGTGGGTACTGCAGCCAACACCACTGCCGCCTAG---------ACC--------------AGCCCA----CCTGTGGACACTGCCGTTGTG-GGGACCCAGCACCCTGAGGCCACCTTCTGGTCACCTGGGAGGAGCCTCCCGAGGAAAGCGTCTCCCGGGTGGGTGTCGGGTGAGAGGGCTACAAAGGGAGAGAGGACCAGTCGGCCCGACTAGA-----------------GCCAGTCCCTGCTCCTTCTCCAGG----GGCCACCTGACCTG--------------------------------------------CTAGCTTGCCAAGCCTGGCAGCCACCACCTAGTCAGTGCCCAGGAGCCGGGGAGCCGAGGAGGG-------TGAGGGTCCCAGCCAGCCTTCTCCCGGGGGTGGCCT-------------GGGGGCATCA----------GGT----ACTGGCCTGGCTAGTGG------------------GGGCCGCACTCACCTTGCCAAAGCTGTCCGCGTATTCCCGGTACTCA-GAGGATATCTCCTGAATGGAAGGGTGGGGGA---CA a score=-11257.0 s hg17.chr17_random 1964843 104 + 2618010 GAGGGGCC-----TGCCCTC--CCGGC-------GTGGCCACCCCAGAACCGGCTGGGGATGG------------------GGAGC------AGTGG----------------GCAGGAGGACC--------CTGAGAG----GGCA--GGGAGGTGC------CCCTCCTTTC-------------CCCT s panTro1.chr19 81221786 104 + 82489036 GAGGGGCC-----TGCCCTC--CAGGC-------GTGGCCACCCCAGGACCGGCTGGGGATGG------------------GGAGC------AGTGG----------------GCAGGAGGACC--------CTGAGAG----GGCA--GGGAGGTGC------CCCTCCTTTC-------------CCCT s mm5.chr11 120284574 144 + 121648857 AAGGGACC----TTGCCCTC--CTGAC--------TGCCAACCCTGGGCCCAGCACGCCATGGCC--------------CCGGAGCCCACTAAGGGGTTGGTCAGGGAGAGAAACAGGATAAAC--------CTGAGGG---TGGCT--AGGTGGTGC------ACCCCCCCCCCTGCACCCACCCTCCCC s rn3.chr10 110019883 136 + 110733352 AAGGGACC----TTGCCCTC--CTGAC--------TGCCAACCCTGGGACCAGCACACCACAGCCCCGGAGCCCACTAAGGGGATG------GATGG----TCAGGGAGAGAAACAGGATAAAC--------CCGAGGG----GTCATTAGGAGGTGC------CCCTCCCTCC-------------CCGC s canFam1.chr18 30404195 105 + 66173745 TGGAGGACATGGTCAACCCC--CAGACCCCGAAACTCCTTGTCCTGGAGCCCGC---------------------------AGAGG------AGTAA----------------GCACCAGGCA--------------------GATC--GGGTGctccctccctccctccctcc-------------cAGC s galGal2.chr3_random 668957 110 + 1636275 GAGTGTTT-----TGCCCGCAGCCAGC-------TTGCCAGTTCT----CCG--TGGATATG-------------------GGAGC------CAGGC----------------CCAGGAGCTCCACTGCCATTTTGGAGCAGTGGAA--GGCAAGAGC-------CGACGTTTG-------------GCCT a score=380.0 s hg17.chr17_random 1964947 35 + 2618010 GGAGACCTCGACCCAGGGGCC---TCGGGGATTCCG-------CC s panTro1.chr19 81221890 35 + 82489036 GGAGACCTCGACCCAGGGGCC---TCGGGGATTCCG-------CC s mm5.chr11 120284718 39 + 121648857 CGTGTCCTTAGCCCAGGGACCGTATCCCAGACCCCA------TCC s rn3.chr10 110020019 39 + 110733352 TGTGCCCTCAACCCAGGGACCATATCCCAGACCCCA------TTC s canFam1.chr18 30404300 42 + 66173745 AGTGTCCTTAGCCCTGGGACC---TTGGGGATCCCGCCCCGTTCC s galGal2.chr3_random 669067 29 + 1636275 GGACTCCAAACTCCCA--------CCCAAAGCCCTG------T-- s fr1.chrUn 148478912 38 + 349519338 GGACACGTAAACCCACGTGACGCGTTGGTGTCCGGG-------GC a score=164879.0 s hg17.chr17_random 1964982 98 + 2618010 GCC--------GACTCACCTGGCTGCTGTGATGGGCTTTGGTTACCAGCAGCATGCGGCCCACGAGGTCTGTGGTGGACACCCCTTGCGTGCGCTTGCATTCTCTG s panTro1.chr19 81221925 98 + 82489036 GCC--------GACTCACCTGGCTGCTGTGATGGGCTTTGGTTACCAGCAGCATGCGGCCCACGAGGTCTGTGGTGGACACCCCTTGCGTGCGCTTGCATTCTCTG s mm5.chr11 120284757 100 + 121648857 GTTTG------GACTCACCTGGCTGCTGTGATGGGCCTTGGTCACCAGCAGCATGCGACCCACGAGGTCTGTGGTGGACACACCCTGGGTGCGTTTGCACTCTCTG s rn3.chr10 110020058 100 + 110733352 CTTTG------GACTCACCTGGCTGCTATGGTGGGCCTTGGTCACCAGCAGCATGCGACCCACGAGGTCTGTGGTGGACACACCCTGGGTGCGTTTGCACTCTCTG s canFam1.chr18 30404342 100 + 66173745 CCCCA------GGCTCACCTGACCACTATGATGGGCCTTGGTCACCAGCAACATGCGGCCAACAAGGTCCGTGGTGGACACGCCCTGGGTGCGCCTACACTCTCTG s galGal2.chr3_random 669096 95 + 1636275 -----------GACTCACTATGTTGCTGTGGTGAGCCTTAGTCATGAGCAGCATGCGGCCAACGAGGTCGGTAGTGGACACACCTTGAGTGCGTTTGCATTCCCTG s fr1.chrUn 148478950 106 + 349519338 GAATGAGACACAACTCACCAAGTTGCTGTGATGCGCCTTGGTCATGAGAAGCATCCGTCCCACCAGGTCCGTGGTAGAGACGCCCTGCGTGCGCTTGCATTCGCGG s danRer1.chr2 4160006 98 - 32943701 --------GTCTACTTACAATGTTACTGTGGTGCGCTTTTGTTAACAGGAGCATTCGACCCACTAGGTCTGTCGTAGACACTCCTTGTGTGCGTTTGCACTCCCTG a score=8466.0 s hg17.chr17_random 1965080 66 + 2618010 ---GGGGACACAGTGGGAGTGGGGTCTCATCCTGGG-ACACTCGCAAGGCTC-TGCCTCCTGCTACCACCA s panTro1.chr19 81222023 66 + 82489036 ---GGGGACACAGTGGGAGTGGGGTCTCATCCTGGG-ACACTCGCAAGGCTC-TGCCTCCTGCTACCACCA s mm5.chr11 120284857 65 + 121648857 ---GGACAGAGGTAAGGTGGAGGTTTTCATCC-AGG-ACAATCCTGAGGCTC-TGCTATAGGCAGAAGCCA s rn3.chr10 110020158 67 + 110733352 ---GGACAGAGGTAAGGTGGAGGTTTTCATCCAGGATACGCTCCTGAGGCTC-TGCTATAGGCAGAAGCCA s canFam1.chr18 30404442 55 + 66173745 C--GGACGGACGTGGGCTCAGGGCTCGCACCCAGAC-GTGCTCCCGAGCCC-------------ACCGCCA s galGal2.chr3_random 669191 61 + 1636275 CAGGGAGATAAGCAAAGGGTAAAGC---------AG-ACGCCACAGAAGCACGTGCCTCCTTCTCTCCCCA a score=9296.0 s hg17.chr17_random 1965146 623 + 2618010 NCT-AGGGACACTAGCAGCCCTGCTGTGGCAGNAACCCACGGCTGCCCCAAAGACTGAGGGTCCCCTTCCTGTGCAAGGCCATAACAGAAAACCTGGGTTGGGAACANTGGGGAAGGCCTCCANCGCTTTTATTGACTGAAGGG--------AGTGGCAGGAGCACAG-----------------AAAAGGACCCTTGCTGGGGCCCAGGTGTGCAATG-----CCAGGGAGAGGATGGG---CACTGGGG---TAGCAGCTCTG---------CTTCCTGCCTCCCTCACACCCAC-----------------------GTCCTGCCC--GCTGAGCATCT-----------GCAGCTGAG---TGAATTCTCAGCTGCAGCATCTCATGCGGGAGCCACTGGCCTCA-------TGTCCCT---GACGTCTGGTAATTCAGATATAGTGCCAGCTCCCCAGCAGTGCCAGCCAC------------------------GTCCCCCGAGC--------TCAACA--GCTGCCAC-CTCACAAAGCTG--------------TGCCTTTGGAGCCCTNGGGGCCATGGGTCTGCAGCACCAAATGGCAAGGGCCTCCAGGCC-ACCCCACAATGGCACCTCCATCCCTCGAGTTCCCAGTCCTGGGCNGTGAGGAACATGGCCCAGGGCCTGGACGCTCCCCTCACGGGCTCCCGGT----AAATAGCAA-AGCACGAGCCAGG-A---------GGGAGCCCC-----GTGTCCAGCTCCCTGG-ATG s panTro1.chr19 81222089 617 + 82489036 -CT-AGGGACACTAGCAGCCCTGCTGTGGCAG-AACCCACGGCTGCCCCAAAGACTGAGGGTCCCCTCCCTGTGCAAGGCCATAACAGAAAACCTGGGTTGGGAAC-GTGGGGAAGGCCTCCA-CGCTTTTATTGACTGAAGGG--------AGTGGCAGGAGCACGG-----------------AAAAGGACCCTCGCTGGGGCCCAGGTGTGCAATG-----CCAGGGAGAGGATGGG---CACTGGGG---TAGCAGCTCTG---------CTTCCTGCCTCCCTCACACCCAC-----------------------GTCCTGCCC--GCTGAGCATCT-----------GCAGCCGAG---TGAATTCTCAGCTGCAGCATCTCGTGCGGGAGCCACTGGCCTCA-------TGTCCCT---GACGTCTGGTAATTCAGATACAGTGCCAGCTCCCCAGCAGTGCCAGCCAC------------------------GTCCCCCGAGC--------TCAACA--GCTGCCAC-CTCACAAAGCTG--------------TGCCTTTGGAGCCCT-GGGGCCATGGGTCTGCAGCACCAAATGGCAAGGGCCTCCAGGCC-ACCCCACAATGGCACCTCCATCCCTCGAGTTCCCAGTCCTGGGC-GTGAGGAACATGGCCCAGGGCCTGGACGCTCCCCTCACGGGCTCCCGGT----AAATAGCAA-AGCACGAGCCAGG-A---------GGGAGCCCC-----GTGTCCAGCTCCCTGG-ATG s mm5.chr11 120284922 530 + 121648857 CCTGAGGGACA----CAACCCT-----------AACCCAGGACCACCC-----------------------------ACCCACAACAGAAAG----------------------------CCA-----------GACTGG---------------GGCAGGAGC----------------------AATGGGCTC--------ACTCAGCTGTACAACGTAACTCCAGGGAGTAGGCAGGTCACATTGAGGACATACCAGTTCTG------------------GCCCCCATTCCAAC-----------------------GTTGTTCCC--TCTG-GCCTCTATTACACTCAGGCAACCCTGATATGCATTCCTGGCTGCTCTGTCCC-TATAGGAACCACTGGCCACAGC-----TGGCTCTTTAAATTACAGTTAATTAAAATAAAAAGGCAGCTCTCCAGGGGCACCTGAGACTACCGAGTCTACGAGTCTAAGGATGTCCTACAAACGGTGATGATCGAGAATGCTGCCAT-CTGGCAGAGCTA--------------TGCCT-----------G-------------GTAGCACC-----GCAGAGGCCCTGGGGTTGGTCACACAAAG---CATGCTGTCCTGCACTTTCCA--------C--------ACCTGACCGAGGACCCAAATG----CCTTGCAGGGTATGTATGTCAACACAGCAACAAGGAGAGCTAGGCA---------GGGGGTCTCCTCTTGAGCCCCACTCCCTG----- s rn3.chr10 110020225 579 + 110733352 CCTGAGGGACA----CGACCCT-----------AATCCAGGACCACCCACAACAACAACAACAACAAC---------AACAACAACAACAAAAACGGACGGGGCA--GGAGTAATGGGCTCCT------------ATTGG--------------TGACAGGAGCAGAGGGCTCACTCCACTGTACAATGTGACTC---CAGGGGTGTAGACAGGCCACA-----TTGAGGACAGGACAG----CTCTGG-----TCCCCATTCTGATGCTATCTCCTCTGGCCTCTATTACACCCAG-----------------------GCCCAAACCTTGCTGTACATTC-----------TCTGGCAAG---GGAGTCCCTGGCTGCTCTGTCCC-TGTAGGAGCCACTGGACACAGC-----TGGCTCTTTAACTCACAGTTAATTAAAACAGAAAGCCAGCCCTCCAGGGGCACCAGAGA-------------------------GACTACTGAG---------TCTGCA--GATGCCCTACAAACAGAGCTGATCAAGAATTGCTTTGCCT-----------G-------------GTAGCCATGC---ACAGAGTCCCCGGGGTCGGCCACACAAAG---CATTCCGTCCTGACCTTTCCAG----------------ACCTGACTGAGGGCTCAAATG----CCTTGCAGGGTACAGTC---AACACAGCAA---TGAGAGCTGGG-AAGGAGGGGGGGGGGTCTCCTCTTGAGCCCCACTCCCTG----- s canFam1.chr18 30404497 448 + 66173745 GCT---------------CCCC--------------CCGGGGCTGCCT------CTGTGCGCACACTGCCCACTCCGGGCCG-GACAGAAAACCGGGCCCAGGAGC-GTGGGGGAACACTGTG----CTTTACCAACTGCAGAACCCACTACAATGGAGGGAGCGTGC----------------------------TGCCACAGCTCAG-TGTGCAGCG-----TTGGGGGGCTGGCCAG---TCGGGGGG---TGGGGGGGCGG----------------GCACCACCAGCCCCACGGCGCGCACGGACTGCAGATCTGGCCTTGCCC-TGCAACGCGCCC-----------TCTGCCAAG---GGAACTCCAGGCTGCGCTGTACC-CGGAGGAGCCGCTGGCCACAGTGGCTGAGTTCCT------------------CAACAAGATGACACGCTCCTAGTCACACC------------------------------GTCCTTC------------TCCCCG--CCCGACAG-C-------------------------CACTT-----------G-------------GATGTACC-----GCA-----------------------------CGCACAGCCC-------------CCTGGGC------------------------------------------------------AGGCAGAAAGAGCCCGGGGGGGG-G---------GGGCGCTTT-----GAGCCCCACTCCTTGACAAA a score=-3890.0 s hg17.chr17_random 1965769 23 + 2618010 GCCAGGCCCGCNGGTGGAGACTC- s panTro1.chr19 81222706 22 + 82489036 GCCGGGCCCGC-GGTGGAGACTC- s mm5.chr11 120285452 5 + 121648857 ------------------GACCT- s rn3.chr10 110020804 5 + 110733352 ------------------GACCT- s canFam1.chr18 30404945 21 + 66173745 ATGGGGTCCTCCCGGG--GGCTC- s danRer1.chr2 4160181 19 - 32943701 GCGAGGCCTGTTG-----AACTTT a score=25809.0 s hg17.chr17_random 1965792 18 + 2618010 ACCTGTACCTCCCAGCCT s panTro1.chr19 81222728 18 + 82489036 ACCTGTACCTCCCAGCCT s mm5.chr11 120285457 18 + 121648857 ACCTGTACCTCCCAGCCT s rn3.chr10 110020809 18 + 110733352 ACCTGTACCTCCCAGCCT s canFam1.chr18 30404966 18 + 66173745 ACCTGTACCTCCCGGCCG s galGal2.chr3_random 669594 18 + 1636275 ACCTGTATCGCCCGGCTG s danRer1.chr2 4160200 18 - 32943701 ACCGGTATCTCCCTGTTC a score=102393.0 s hg17.chr17_random 1965810 53 + 2618010 GCTTTACTTCCTCATAGGTGTCCCGGCCATCTACAGTCAGGGTGATGTCATCT s panTro1.chr19 81222746 53 + 82489036 GCTTTACTTCCTCATAGGTGTCCCGGCCATCTACAGTCAGGGTGATGTCATCT s mm5.chr11 120285475 53 + 121648857 GCTTCACTTCCTCATAGGTGTCTCGGCCGTCTACTGTCAGCGTGATGTCATCT s rn3.chr10 110020827 53 + 110733352 GCTTCACTTCCTCGTAGGTATCTCGGCCATCTACTGTCAGCGTGATGTCATCT s canFam1.chr18 30404984 53 + 66173745 CCTTCACTTCCTCGTAGGGGTCCCGGCCATCTACGGTCAGCGTGATGTCATCT s galGal2.chr3_random 669612 53 + 1636275 TCTTCACTTCCTCGTAGGTGTCCTTGCCGTCTATCGTTAAGGTGATGTCATCT s fr1.chrUn 148479069 53 + 349519338 GCTTCACCTCTTCGTAAGTGTCTTTCCCGTCTACCGTCAGGGTGATGTCATCT s danRer1.chr2 4160218 53 - 32943701 TCTTCACCTCATCGTATGTATCCTTACCATCCACAGTCAATGTGATGTCATCT a score=1084.0 s hg17.chr17_random 1965863 2 + 2618010 AA s panTro1.chr19 81222799 2 + 82489036 AA s mm5.chr11 120285528 1 + 121648857 -A s rn3.chr10 110020880 1 + 110733352 -A s canFam1.chr18 30405037 2 + 66173745 GA s fr1.chrUn 148479122 2 + 349519338 GG s danRer1.chr2 4160271 2 - 32943701 GA a score=5553.0 s hg17.chr17_random 1965865 9 + 2618010 GCAGTGACA s panTro1.chr19 81222801 9 + 82489036 GCAGTGACA s mm5.chr11 120285529 9 + 121648857 GAGGTGACA s rn3.chr10 110020881 9 + 110733352 GAGGCGACA s canFam1.chr18 30405039 9 + 66173745 GGAGCAACA s fr1.chrUn 148479124 9 + 349519338 ACACAGACA a score=-4705.0 s hg17.chr17_random 1965874 9 + 2618010 CAC--------AAGGAC s panTro1.chr19 81222810 9 + 82489036 CAC--------AAGGAC s mm5.chr11 120285538 17 + 121648857 CGCACACAGAAAAGGAT s rn3.chr10 110020890 11 + 110733352 AGCACACAG--AA---- s canFam1.chr18 30405048 10 + 66173745 CATGTGT----GAG--- a score=-8352.0 s hg17.chr17_random 1965883 25 + 2618010 AANGGATC------------------------------------------------------CTTAACCCAAAGCCACC s panTro1.chr19 81222819 24 + 82489036 AAAG-ATC------------------------------------------------------CTTAACCCAAAGCCACC s mm5.chr11 120286243 24 + 121648857 AGGG-ATT------------------------------------------------------TTTAACTGAGAGCCCCC s rn3.chr10 110020901 78 + 110733352 AAGG-ATTTGTTTCTGTTTTGTTATTTTGGGCGGGATGGGGGTGGGGGTGGGAGTGTTGCTGTGTAGCCCAGCATGACC s canFam1.chr18 30405058 11 + 66173745 ------------------------------------------------------------------AATGAGCACCC-- a score=-12607.0 s hg17.chr17_random 1965908 179 + 2618010 AGAACCTTCAGAGCCCAG-------------------------------------------------------------GACCCTCTCGGCCCCTGGCCT-----GCCCTAGTGTCCGCGTGCCCATTTCT---AGGTGGGGGCCCGGAAATGTCTCAGATCCTCAAA----GGGCG------------GAGG------CCCCCTGTTCCCGGATGTCCC-ACCAGCAGATCTGAT--CCTGAGCCACCTGATGTCCCCAGGCCCCCAGGTCC s panTro1.chr19 81222843 179 + 82489036 AGAACCTTCAGAGCCCAG-------------------------------------------------------------GACCCTCTCGGCCCCTGGCCT-----GCCCTAGTGTCCACGTGCCCATTTCT---AGGTGGGGGCCCGGAAATGTCTCAGATCCTCGAA----GGGCG------------GAGG------CCCCCTGTTCCCGGATGTCCC-ACCAGCAGATCTGAT--CCTGAGCCACCTGATGTCCCCAGGCCCCCAGGTCC s mm5.chr11 120286267 136 + 121648857 AG--------GGGCCCCT-------------------------------------------------------------TTCCCTTT--GCCACTG-------------------------------CTCT---GGGGATGGTCCCAGAGCTTCCTTGCATGTGCATA----GGATGAGCCAAGATGA-AAAG------CCCACTGTCTCTG--TGACTAGGTCAGCAGGGCTGA-------------CTG------CCCAGCCCCCACCTCA s rn3.chr10 110021119 259 + 110733352 GGAACTTTGAGCGCCCCTCTTTCAGCTTCCTCCGTGCTAAGAGGATAGTTTTGTGCCATAAACAGGGATTCTTAACTCAGAGCCCCGAGGCACCAGAACTCCTTGTCCCCAGCGAACCCTTTGCCATTGCTCTGGGGGATGGACCCAGAACTTTCTTGCCTGTGCATACGATGAGCT----AAGATGA-GAAGAGCTGTCTCGCTGTCTCTG-AGGAGCT-GTCAACAGGTCTGACTGCCCAGCTCACCC-------CCAACCCGCCAACCTC s canFam1.chr18 30405069 102 + 66173745 --------GTGAGCCTCA-----------------------------------------------------------------TCCCAGGCCCCTGG-------------------------------------GGGCAGGGACTC-------TTTCAGG---GCAAG----GACCC----AGCGTGACGAGG------CCCCAGCACCCTGGGGGCCCC-TCCGGC------------------------------CC--GCCCACAG---- a score=2728.0 s hg17.chr17_random 1966087 6 + 2618010 CAGCCC s panTro1.chr19 81223022 6 + 82489036 CAGCCC s mm5.chr11 120286403 6 + 121648857 GACCCT s rn3.chr10 110021378 6 + 110733352 CAGGCC s canFam1.chr18 30405171 4 + 66173745 --GGCC s fr1.chrUn 148479210 6 + 349519338 CAGCCT a score=209908.0 s hg17.chr17_random 1966093 138 + 2618010 ---CGCCACTCACTGCCGTGAACACAGAAGTCACAGTTGTATTTGTCCAGGGTCTCTAGTGTAGTGACGTAGGGAGCCGCTGGCACCACCTCGTCCACCCATTTGATGGCCTGCACCATCTTGTATCTCTCCTCCTGAGTG s panTro1.chr19 81223028 138 + 82489036 ---CGCCACTCACTGCCGTGAACACAGAAGTCACAGTTGTATTTGTCCAGGGTCTCTAGTGTAGTGACGTAGGGAGCCGCTGGCACCACCTCGTCCACCCATTTGATGGCCTGCACCATCTTGTATCTCTCCTCCTGAGTG s mm5.chr11 120286409 138 + 121648857 ---GCCCACTCACTGCCGTGAACACAGAAGTCACAGTTGTGCTTGTCCAGTGTCTCCAGGGTGGTGACGTAGGGAGCAGCGGGCACCACCTCATCCACCCACTTGATGGCCTGTACCATCTTGTACCTCTCCTCCTGGGTA s rn3.chr10 110021386 138 + 110733352 ---GCCCACTCACTGCCATGAACGCAGAAGTCACAGTTGTGCTTGTCCAGTGTCTCCAGTGTGGTGACGTAGGGAGCAGCCGGTACCACTTCATCCACCCACTTGATGGCCTGTACCATCTTGTACCGCTCCTCCTGGGTA s canFam1.chr18 30405175 138 + 66173745 ---ACCCACTCACTGCCATGGACACAGAAGTCGCAGCTGTACTTGTCCAGGGTCTCCAGCGTGGTAACGTAGGGAGCCGCCGGCACCACCTCGTCCACCCACTTGATGGCGCGCACCATCTTGTACCTCTCCTCCTGAGTG s galGal2.chr3_random 671493 138 + 1636275 ---CACCACTCACCGCCGTGCACGCAGAAGTCGCAGTTATATTTGTCCAAGGTTTCCAGCGTGGTGACATAAGGAGCCCCGGGCGCAATCTCATCCACCCACTTGATGGCTTGCACCATCTTGTACCTCTCCTCCTGCGTG s fr1.chrUn 148479216 141 + 349519338 CGTGGCAGCTCACCTCCATGCACACAGAAGTCACAGTTGTACTTGTCCAGGGTCTCCAGGGTGGTGACGTAAGGCGCTCCTTCCACTATCTCGTCCACCCACTTGATGGCACGCACCATTTTGTAACGCTCTTCCTGAGTG a score=70021.0 s hg17.chr17_random 1966231 37 + 2618010 AACACCGGGGGCCCCTTGTGCTTGGCGATCTCCTCTA-- s panTro1.chr19 81223166 37 + 82489036 AACACCGGGGGCCCCTTGTGCTTGGCGATCTCCTCTA-- s mm5.chr11 120286547 37 + 121648857 AACACCGGGGGCCCCTTATGCTTGGCAATCTCCTCTA-- s rn3.chr10 110021524 37 + 110733352 AACACCGGGGGCCCCTTATGCTTGGCAATCTCCTCTA-- s canFam1.chr18 30405313 37 + 66173745 AACACCGGGGGCCCCTTGTGCTTGGAGATCTCCTCTA-- s galGal2.chr3_random 671631 37 + 1636275 AAGACGGGGGGGCCCTTATGCTTGGCGATCTCCTCTG-- s fr1.chrUn 148479357 37 + 349519338 AAGACCGGCGGTCCTTTATGTTTGGAAATCTCAGCTG-- s danRer1.chr2 4163628 39 - 32943701 AAGACTGGAGGACCCTTGTGCTTGGCTATTTCCTCTGAA a score=-2316.0 s hg17.chr17_random 1966268 11 + 2618010 G-------GAAAAGGACA s panTro1.chr19 81223203 11 + 82489036 G-------GAAAAGGACA s mm5.chr11 120286584 18 + 121648857 GGGACAGAGAAAAGGACA s canFam1.chr18 30405357 11 + 66173745 G-------GAAGAAAGCA s galGal2.chr3_random 671668 11 + 1636275 -----GGTGAGAGAGA-- s fr1.chrUn 148479396 11 + 349519338 -------AGAGGAGAGCA s danRer1.chr2 4163667 11 - 32943701 -----GGTGAAAAACA-- a score=546.0 s hg17.chr17_random 1966279 1 + 2618010 A s panTro1.chr19 81223214 1 + 82489036 A s mm5.chr11 120286602 1 + 121648857 A s canFam1.chr18 30405368 1 + 66173745 A a score=160.0 s hg17.chr17_random 1966279 3 + 2618010 ACG s danRer1.chr2 4163678 3 - 32943701 ATG a score=807.0 s hg17.chr17_random 1966280 2 + 2618010 CG s panTro1.chr19 81223215 2 + 82489036 CG s canFam1.chr18 30405372 2 + 66173745 CG s danRer1.chr2 4163679 2 - 32943701 TG a score=415.0 s hg17.chr17_random 1966282 9 + 2618010 GGG-AGACTG s panTro1.chr19 81223217 9 + 82489036 GGG-AGACTG s canFam1.chr18 30405374 10 + 66173745 AGGTAGGCGT a score=0.0 s hg17.chr17_random 1966282 9 + 2618010 GGGAGACTG a score=-275.0 s hg17.chr17_random 1966291 46 + 2618010 GGGA--CCCCAGCCCAC--CCGGCCCCTCCAGTAGGAGGCCCCTTCCCAG---- s panTro1.chr19 81223226 46 + 82489036 GGGA--CCCCAGCCCAC--CCGGCCCCTCGAGTAGGAGGCCCCTTCCCAG---- s canFam1.chr18 30405384 43 + 66173745 GGGAGCCCCTGGCACACAGCTGTCTCTCTCCCTGGG-------CCCTCAG---- s galGal2.chr3_random 671679 41 + 1636275 GAAA--TCCCAGTTAGAAGTACGGCCTGCAGCGAGG-----------CAGCTTG a score=-219.0 s hg17.chr17_random 1966337 10 + 2618010 CACCCAGCTG----- s panTro1.chr19 81223272 10 + 82489036 CACCCAGCTG----- s rn3.chr10 110021656 10 + 110733352 CACCTAGCAT----- s canFam1.chr18 30405427 10 + 66173745 CCCCCGGGGG----- s galGal2.chr3_random 671720 10 + 1636275 -----AGGGGCGCTG a score=518.0 s hg17.chr17_random 1966347 55 + 2618010 -TAGCCACACAAGAGGG---CCGGTGGGGGCAGG--CTGTCTCTCTAC---CCTGGCCCTTAGC s panTro1.chr19 81223282 55 + 82489036 -TAGCCACACAAGAGGG---CCGGTGGGGGCAGG--CTGTCTCTCTAC---CCTGGCCCTTAGC s mm5.chr5 15997683 55 - 149219885 -TAGCCACACACGAGAG---CTGGCGATGGCTGG--CCGACTCTCTTC---CCTGGCCTCTACC s rn3.chr10 110021666 57 + 110733352 -CAGCC-CACAAGGAGGGACCCCATGTCAGTAGC--ATAGTCCTTTGG---CCAGCACCTGTGC s canFam1.chr18 30405437 53 + 66173745 ---------CAGAAACGCACCCAGTGGCCTCTAT--CCTGTTCTCTATGGGCCAGTCCAGGTGC s galGal2.chr3_random 671730 59 + 1636275 ATAGCATGCAAGGAACG--CTCAGCGAGTTCAGGAAATGTTTTACTTC---CATCACACTTTGA a score=0.0 s hg17.chr17_random 1966402 5 + 2618010 CCACT a score=-1013.0 s hg17.chr17_random 1966402 2 + 2618010 CC----- s panTro1.chr19 81223337 2 + 82489036 CC----- s mm5.chr5 15997738 2 - 149219885 TC----- s rn3.chr10 110021723 2 + 110733352 TC----- s canFam1.chr18 30405490 7 + 66173745 TCAGGAC a score=482.0 s hg17.chr17_random 1966404 3 + 2618010 --ACT s panTro1.chr19 81223339 3 + 82489036 --ACT s canFam1.chr18 30405497 5 + 66173745 GTGCT a score=1146.0 s hg17.chr17_random 1966407 2 + 2618010 AG s panTro1.chr19 81223342 2 + 82489036 AG s rn3.chr10 110021725 2 + 110733352 AG s galGal2.chr3_random 671789 2 + 1636275 AG a score=-53012.0 s hg17.chr17_random 1966409 278 + 2618010 TGCTGGCCAACT--------GGGT---GGCTCTCTT-CCCTGCGAGGGTCTCAGGCAAAGG----CAGAGATTCCTT-----------CTG-------ACGAGCAGGTGCTCAGCCCCTGAAGGCT-TGGGAGCCTCGCTGGCAGTGGTG-GGGAGCNAGGTGC-CCCTTCTCT-TTAG-----CTGGGACAGGAAANTG----------------CAAGATGGGAAAGG------CATTAGGCCATCCTCAGCTGGGGCTGGGCTGGGTGAGCCTACAGTGCCCTCCCCTACAG--CTGTGCCCTGGCAAGG----------TGGCCCCA-------GG-CCTGCAG----GCTTTCAGTCAACAG s panTro1.chr19 81223344 276 + 82489036 TGCTGGCCAACT--------GGGT---GGCTCTCTT-CCCTGCGAGGGTCTCAGGCAAAGG----CAGAGATTCCTT-----------CTG-------ACGAGCAGGTGCTCAGCCCCTGAAGGCT-TGGGAGCCTCGCTGGCAGTGGTG-GGGAGC-AGGTGC-CCCTTCTCT-TTAG-----CTGGGACAGGAAA-TG----------------CAAGATGGGAAAGG------CATTAGGCCATCCTCAGCTGGGGCTGGGCTGGGTGAGCCTACAGTGCCCTCCCCTACAG--CTGTGCCCTGGCAAGG----------TGGCCCCA-------GG-CCTGCAG----GCTTTCAGTCAACAG s mm5.chr11 120286727 211 + 121648857 TGCTGGATAACTAAGAAGAGGGTT---CAGTCTCTT-CTGTTTCAAGAACCGGGGTAGGGG----CAGACAATACAG-----------CTG-------TCCTGTGTTGCCACAGCTCTCTATAGCT-------------------------GGTACC-AGGCTA-TGTTACTCT-CTAAGCTCCCTGAGTCACCAC--TG----------------TGCTCTGGGGAAGG--------------------AAGCTGGAACCATTC---------------TGCCCGCCCCTC--------TGCCCC-------------------ACCCCA-------TGCCCTGTAG----GCTT----------- s rn3.chr10 110021733 242 + 110733352 TGCTGGTTAACA--------AGGA---TGCCCTAT------------AACTCAGAAGAGGG----ATCAGCCTCTTC-----------CGGTTCAAGAACCAGGGTAGGGGCAGACAATG-CAGCT-GAGGAGACTCTGT-CCAGTGTTGCCATAGC------------TCTCT-CTAG-----ATGGGACCAGGCTGTG----------------TCACTTACTAAGCT------CTCTGAGTCACCACTGACTG----TGCTCTGGGGAAGGATTCAGGAATGGTTCTGCCGG-----TGCCT--------------------GCCCCACCCTGTTTGCCCTGCAG----GCTT----------- s canFam1.chr18 30405502 240 + 66173745 TGCTGGATAACT--------GCAC---AGTTCCCTCACCCAACCAGAGCTCCAGGCAAAG-------------TCCT-----------CTG-------ACAGCCGGGCGCTCCATTCTCGAAGACCCTGGGACCCAGGTTGTTGGGGGAAGGGGAGT-GGATGC--------------------CAGGGCCAGAAGCTTG----------------ACCCCTCGGCTGCA---------TTGTTCAACCTGAGCCG----TGAGATGGA-GAGCCCCCGGCGGGTGTACCTGCCGCGCTGGGCTCTTGGGAGG--------GATGGCCATA-------AG-CGT---G----GCCT----------- s galGal2.chr3_random 671791 299 + 1636275 TGCGTGGTAAAG--------GCGTTGGGGTTCCCTC-------------TGCAGGCACGGGGTGTCGGTGACTCCTCACACCCACACACTG-------CCTCCCAAGGGCACTGCC-----GGGCC-CCGCAGCCCCCGGCACAGCGTCTGAGCAGC-AGCTTCACCCTACGCTGCCAG-----CTGCACCCATAAACTGATTTCAGATCCACGTTCACGAGCAGGAACGACTCCCCAGCACTCAACTCTCAGCCGGGTTCGATCTGAG--------------TTTCCCGTGCAG--TACCGCACTGGGGAGCAGCCCCGGGCTGACCCTC-------GG-CCGGCTGTGGCGCCT----CCGAGAG a score=-40168.0 s hg17.chr17_random 1966687 50 + 2618010 TCGCAACC----CACAGGAGGGCTGGG---------------------------------------GGGCCGC---------GGGTGGGCGAGGCCATCT-------------------------------------------------------GT s panTro1.chr19 81223620 50 + 82489036 TCGCAACC----CACAGGAGGGCTGGG---------------------------------------GGGCCGC---------GGGTGGGCGAGGCCATCT-------------------------------------------------------GT s mm5.chr11 120286938 34 + 121648857 ----AATC----CATTGGACTGTCCGGCA---------------------------------CATCGGGCC-----------------------CCAC----------------------------------------------------------- s rn3.chr10 110021975 38 + 110733352 ----CATC----TGCTGGACT---------------------------------------------GGGTCTC---------AGGCACAGAGGCCCACAC--------------------------------------------------------- s canFam1.chr18 30405742 46 + 66173745 ----AAAC----CCTTGCAGGGCCCCTTA-------------------------------------GGGTT-----------AGTCAAAGGCAGCAGCCC-------------------------------------------------------CA s galGal2.chr3_random 672090 151 + 1636275 CCGCAACCACAGCTCAGCAGAGCACAGCGGCACCGCCCGACGGCGCGCCGGCAGCCGCCGCTCCCGGGGACCC------GCGGGGTGAGAGCGGCCGCCGTAACGGCCGTGCGGGTAACAGCGCGGGGCGCACGGAGAGGCGCACAGCCGAGCGACA s fr1.chrUn 148479552 56 + 349519338 TTGCAGAC----CATAAGGAGGCA------------------------------------------GAGGCTCATAAATGTGACATGAATGAGGTAATAG-------------------------------------------------------AT a score=160171.0 s hg17.chr17_random 1966737 81 + 2618010 GCTTACCATCGGTGTGCACGCCTACGATGAGGTAGTCACCCATGGCCCGTGCCTGGCGCAGCTGGTTGGAGTGGCCGTAAT s panTro1.chr19 81223670 81 + 82489036 GCTTACCATCGGTGTGCACGCCTACGATGAGGTAGTCACCCATGGCCCGTGCCTGGCGCAGCTGGTTGGAGTGGCCGTAAT s mm5.chr11 120286972 80 + 121648857 -CTTACCATCCGTATGCACACCCACGATGAGGTAGTCCCCCATGGCCCGTGCCTGCCGTAGCTGGTTGGAGTGGCCATAAT s rn3.chr10 110022013 80 + 110733352 -CTTACCGTCAGTATGCACGCCCACGATGAGGTAGTCCCCCATGGCCCGCGCCTGGCGTAGCTGGTTGGAGTGGCCGTAAT s canFam1.chr18 30405788 81 + 66173745 GCTTACCGTCGGTGTGCACGCCCACGATGAGGTAGTCACCCATGGCCCGCGCCTGGCGCAGCTGGTTTGAGTGGCCGTAAT s galGal2.chr3_random 672241 81 + 1636275 GCTTACCGTCCGTGTGCACTCCCACGATCAGATAATCGCCCATGGCCCGCGCCTGGCGCAGCTGGTTGGAGTGGCCGTAGT s fr1.chrUn 148479608 81 + 349519338 TAAGACCGTCTGTATGGACTCCAACTATGAGGTGGTCTCCCATGGCTTTGGCCTGCCGCAGCTGGTTGGAGTGGCCGTAGT s danRer1.chr2 4163731 81 - 32943701 GCTTACCGTCTGTGTGAACTCCTACGACCAGATAATCTCCCATCGCCTTGGCCTGGCGTAACTGGTTTGAGTGGCCGTAAT a score=37986.0 s hg17.chr17_random 1966818 27 + 2618010 GCACCATGTCATAGCTGTGGAGACAGA s panTro1.chr19 81223751 27 + 82489036 GCACCATGTCATAGCTGTGGAGACAGA s mm5.chr11 120287052 27 + 121648857 GCACCATGTCATAGCTGTGAGGACAGA s rn3.chr10 110022093 27 + 110733352 GCACCATGTCATAGCTGTGAGGACAGA s canFam1.chr18 30405869 25 + 66173745 GCACCATGTCATAGCTGTG--GAAAGG s fr1.chrUn 148479689 26 + 349519338 GCACCATGTCGTAACTGCA-AGACAGC s danRer1.chr2 4163812 27 - 32943701 GCACCATGTCATAGCTGCAGAGACAAA a score=1171.0 s hg17.chr17_random 1966845 2 + 2618010 ---GA s panTro1.chr19 81223778 2 + 82489036 ---GA s mm5.chr11 120287079 5 + 121648857 CAGGA s rn3.chr10 110022120 5 + 110733352 CAGGG s canFam1.chr18 30405894 2 + 66173745 ---AA s fr1.chrUn 148479715 2 + 349519338 ---GA a score=26445.0 s hg17.chr17_random 1966847 314 + 2618010 GAGTGGGTGGTCCCTGTGCCAAGGGTGGGG---ACCAGGTGTCCCTGTGGGTTAGGGGCAGAGCTTTGCTCCTCTGAGGACTCCTTAGGAAGCGCTCTG----AGAAGCTGCTGCTGGGA---------------GCCCTGGGACTGNGGNATTCGGAGGATGTAGGTGCTCAGCTCTCCACCCNCN------ACTGGCTCCTGGGCCTGACGGNTGGGACCCCTGTGCCAGATCTAGAAAGGGTGGCAGGGG----------CAGAGATGTCAAGGCCTGGCTGGGTCTAGAGGACTGGTGGGTGCAGG--ACAGACT-GGAGCCCACTGAAAGCTGCAGGGCCA-----CGTGTCCTA s panTro1.chr19 81223780 309 + 82489036 GAGTGGGTGGTCCCTGTGCCAAGGGTGGGG---ACCAGGTGTCCCTGTGGGTTAGGGGCAGAGCTTTGCTCCTCTGAGGACTCCTTAGGAAGCGCTCTG----AGAAGCTGCTGCTGGGA---------------GCCCTGGGACT--GGGATTCGGAGGATGTAGGTGCTCAGCTCTCCACC--CC------ACTGGCTCCTGGGCCTGACGG-TGGGACCCCTGTGCCAGATCTAGAAAGGGTGGCAGGGG----------CAGAGATGTCAAGGCCTGGCTGGGGCTAGAGGACTGGTGGGTGCAGG--ACAGACT-GGAGCCCACTGAAAGCTGCAGGGCCA-----CGTGTCCTA s mm5.chr11 120287084 249 + 121648857 GACTGAGGGTCTTGTGTG----GGATGCAG-----CACGGCTCCCTGAGAG----------------GCCCCCACCAGGGCTCCT-----AGCCC--------AGATCCCGGTGTTGGG------------------CTTACAGCA-----------GAGAAGTCGGTTCTCAGTTGTCCATA--CCCTAAGTACTGGACCTAGGGCAGGAC---TGG-------GTGCCAGGTCTAGCAAGAGTGGCAAATT----------CAGGTA---CAAGGCCTGGCTGGT------GAACT------CCCAAG--ACAGCT-----GTTCACTGGCAGATGCTTAACCATTTCCCATGTCTTA s rn3.chr10 110022125 257 + 110733352 CAGTCAGGTCCCCTACTGATCTTGACAGGA---AACTGGGGGTCTCGTGTG----GGGTACGGCTTTGTTCCT-TGAGAAGCCCCCACCAGGGCTCCTGGCCCAGATCC-------CAGA---------------GTGTTGGGCTT-----ATAGAGGGGAAGTCTGTCCTCAGTTGTCCATA--CC--------------CTAGGTCAGTCA------------GTGCCAGGTCTAGCAAGAGTGGCAAACT----------CAGGTA---CAAGGTCTGGCTCCCGCCACAGCTCT---------------------------TCACTGACAGAGGTTTAGCCATTTCCTATGTCTTA s canFam1.chr18 30405896 309 + 66173745 GGATGATGAGTCCCTGTGCTGAGGGGGGGACTGAGCAGCTGGGGCTGGGTGTGGGCGGGGCAGCCTGGCTCCTCTGGGGCTTCCTTAGGGAGCCCTCTG----GGAAGCTGCCTCTGGGAATGGCTCCTCAGGCTGAGCTGGGGCT----TTCAGAGGGGAGGTGGGCACTCCACTCTCCCCA--CC------ACTGGCCCC-----------------------GGGCCAGATCCAGCGAGCGCGACGGGCTGGGCTGTGCCCAGGGA---CAAGGCCTGCC--GGTCCCCGGGGCTGGTGAGCACAAGGAACAGTCTCGGCTCCCCATCCGGGCCATGGAGC-------TCTGCCCTC a score=5105.0 s hg17.chr17_random 1967161 53 + 2618010 TCCCCTCACCA----AATATCAACTGCCCT---------------------------GGGCAGTCACTTTAAAA--TAAGCCGATG s panTro1.chr19 81224089 53 + 82489036 TCCCCTCACCA----AATATCAACTGCCCT---------------------------GGGCAGTCACTTTAAAA--TAAGCCAATG s mm5.chr11 120287336 57 + 121648857 TGCCTTTGCCCTGTTGGTGCCTCCTGCTAT---------------------------GGGCAGGCATTTCAAGC--TGCTTCAGTT s canFam1.chr18 30406205 80 + 66173745 TGCCCTCACCC------TCTCCTCTCCCCTACTGTAAACCATGGGGGTGGGGTGGGGGGGAAGTCCCTGCAAGCTGTAAACTGATG a score=2807.0 s hg17.chr17_random 1967214 16 + 2618010 TTAACTCTTGGGGTAG s panTro1.chr19 81224142 16 + 82489036 TTAACTCTTGGGGTAG s canFam1.chr18 30406285 15 + 66173745 TTAACT-TAGGAGTAG a score=3162.0 s hg17.chr17_random 1967230 16 + 2618010 GGTTGGATCCTAGACT s panTro1.chr19 81224158 16 + 82489036 GGTTGGATCCTAGACT s canFam1.chr18 30406495 16 + 66173745 GGCTGGACTCTGTACT a score=9840.0 s hg17.chr17_random 1967246 110 + 2618010 ACCTTGAGACAAGCAAACAGTCCCTGGGGCTAACCCAAAACAAATCCAACCACAAAATAAAACCCTGGGAATCACTGGCCCTGAAAATCCTGTCTCTCC-------TCCCTTACNGG s panTro1.chr19 81224174 109 + 82489036 ACCTTGAGACAAGCAAACAGTCCCTGGGGCTAACCCAAAACAAATCCAACCACAAAATAAAACCCTGGGAATCACTGGCCCTGAAAATCCTGTTTCTCC-------TCCCTTA-TGG s rn3.chr10 110022664 63 + 110733352 GCTTTGAAACCAGAGAACAGTCCTGAG-------------------------------------TTGGG------------TGAAGACTCTGTTCTACCCTGAGTTTCCCCG----- s canFam1.chr18 30406511 103 + 66173745 ACCCTGAGACAGGTGGATGGTCTTTGGGGCCAACACAAAACAAAGTCCAACAAATGAGCAAAC----GTAGTTGGTAGCTTTGGAAATCCTGCGCGCTC-------CCCCACAG--- a score=31781.0 s hg17.chr17_random 1967356 124 + 2618010 ---CCTCAAGCTCA--GC-AGGCTTAACGCT-AAGGGTGAACAGCCACTGCCTTGCCACCTGGCTCGAGAGTTTTCATTCACAAATCTAGGTCTGCT-AACACGTGAACTCTCAAGCCCAAAGCTACACAGC- s panTro1.chr19 81224283 124 + 82489036 ---CCTCGAGCTCA--GC-AGGCTTAACGCT-AAGGGTGAACAGCCACTGCCTTGCCACCTGGTTCGAGAGTTTTCATTCACAAATCTGGGTCTGCT-AACACGTGAACTCTCAAGCCCAAAGCTACACAGC- s mm5.chr11 120287920 112 + 121648857 ---CCCCACCCCCAGGGC-TGGCTTAGCTCT-CTGAGAGAACA---AGTGCC-TGTCACCT---------GCTTTTATCCTCAAATCTAGGTCTGGC-CACAAGTACTTTGTCAAGGTC-AAGCTATGCAGA- s rn3.chr10 110022728 113 + 110733352 ---CTCCAGGGCCT------GGCTTAACTCT---GAGAGAACA---AATGCC-TGTCACCTGGCACT-GAGCTTTTATCCTCAAATCTAGGTCTGGC-CACAAGTACACTGTCAAGGTC-AAGCTATGCAGA- s canFam1.chr18 30406614 130 + 66173745 CCTCCAGAAACTCA--GCGAGGCTTTGCTCTCCGGGGCTGACAACCACCTCCCTGCCACCTTGTTCTAGAGCTTTTATCCTTAAACCTGGGCCTGATGAAGGAGTGGCTTCTCAGGTGC-AGGCCCACTTGCT a score=-178.0 s hg17.chr17_random 1967480 20 + 2618010 -CC---------------TGCCACCAACTGGGCCTC s panTro1.chr19 81224407 20 + 82489036 -CC---------------TGCCACCAACTGGGCCTC s rn3.chr10 110022841 12 + 110733352 ------------------AGCCAGCAA------CAC s canFam1.chr18 30406744 36 + 66173745 CCCTGGGTGGGCTGGGGAAGACCCCAAATTGGCCCC a score=0.0 s hg17.chr17_random 1967500 28 + 2618010 GCTGCCCTGGCTTCTTCGCCACTTCTTT a score=1173.0 s hg17.chr17_random 1967500 4 + 2618010 GCTG s panTro1.chr19 81224427 4 + 82489036 GCTG s rn3.chr10 110022853 4 + 110733352 GCTG a score=2179.0 s hg17.chr17_random 1967504 24 + 2618010 CCCTGGCTTCTTCGCCACTTCTTT s panTro1.chr19 81224431 24 + 82489036 CCCTGGCTTCTTCGCCACTTCCTT a score=13290.0 s hg17.chr17_random 1967528 108 + 2618010 ACAGCAGCGGCCCATCCCCTCAAGTGGACAAAGCTGTCCCTGCCTCTCCAGGGAGAGGTGTGACCCTGGCAGCCCACACAGTGCACAGAGTTGCTCCACTGCACACCA s panTro1.chr19 81224455 108 + 82489036 ACAGCAGCTGCCCATCCCCTCAAGTGGACAAAGCTGTCCCTGCCTCTCCAGGGAGAGGTGTGACCCTGGCAGCCCACACAGTGCACAGAGTTGCTCCACTGCACACCA s canFam1.chr18 30406780 88 + 66173745 AAACCAGCTG-----TCTCCTGAGTAGGAGATGC--TCCCTGCTTCTCCAGGA--------GACCCGGG----CCACCTGGTGCAC-GAGCCGCTGCAGTCCCCGACA a score=2893.0 s hg17.chr17_random 1967636 33 + 2618010 ----CTGCTTCCT----------CCCAGCACC----------CCTG---------------------CCACAGTGCGC s panTro1.chr19 81224563 33 + 82489036 ----CTGCTTCCT----------CCCAGCACC----------CCTG---------------------CCACAGTGCAC s mm5.chr11 120288131 53 + 121648857 ----CTGCTTCCT-----------CTAGAGCC----------CTAGTGGGCTATCATCATGTCAACACCACAGTGCAC s canFam1.chr18 30406868 61 + 66173745 CCTGTTATTTCCACCACGGCCCACCCAGTCCCCGCACACAGGCCTGTGGG-----------------TCACATTGCTC a score=35268.0 s hg17.chr17_random 1967669 194 + 2618010 -------GGANGCCCGGCA-----GACATGCT---GGGTAAAATCT-G-------GCGGGCCCATGTACCCACTGGACAGGCTGGAGGGGAGGAGGGGGCAG---AGGCTGGGCC-------------AGGGG------AGCACAGTCTGG---AATGGGGCTGGGG---CCTGGTCA------GGGCAAGGNTCAAAGTCCACTGACACAAAGCCACATTCCTTTTCCCAGAGGTGACTCGGACACAGAA s panTro1.chr19 81224596 192 + 82489036 -------AGAA-CCCGGCA-----GACATGCT---GGGTAAAATCT-G-------GCGGGCCCATGTACCCACTGGACAGGCTGGAGGGGAGGAGGGGGCAG---AGGCTGGGCC-------------AGGGG------AGCACAGTCTGG---AATGGGGCTGGGG---CCTGGTCA------GGGCAAGG-TCAAAGTCCACTGACACAAAGCCACATTCCTTTTCCCAGAGGTGACTCGGACACAGAG s mm5.chr11 120288184 172 + 121648857 -------GGGG---TGGGAGGTGGGACATGATAACGGGCAAATTCCAG-------GACAGCCCTTGTGCCCACTAGACAGGCAGGGCTAGATCAAAGGTCAG---AGTCTGCATC-----------------------------------------TGGGCTTGTGGCACCATGGTGG------GGCCAAGG-TCATAGTCCACTGACACGAAGTCAAAGCT-----------GGTGACTCAGGTGCAAAA s rn3.chr10 110022990 185 + 110733352 -------GGAGGTGGGGCA--------ATGGTAACGGGTAAATTCCGG-------GACAGCCCTTGTGCCCACTAGACAGGCAGGGCAAGATCAGAGGTCAG---AGTCTGCCTC-------------TGGGA--TTGTGGCAC------------TGGGCCCAGTA--TTGTGGTGG------GGCCAAGG-TCATAGTCCACTGACACGAAGTCAAAGCCATTGCT-----GGTGACTCAGATGCAGAA s canFam1.chr18 30406929 232 + 66173745 TGGCCCTGGGG---GGAGA-----GGGGAGCTA--AGTCCAAATCCAGCAGCCCCACTGGCCCCTGAGCTCCCTGGACAGGCAGGCCAGGGT----GGGCAGCTCGGACTGCGGCATGTCCTAGCCACAGGGGCCTTGTGGCTGTGGGTGGCCTGCTGGGGCAGAGG---CCCAGACAGACCGCGGCCAAGG-TCAGAGTCCACCAA-GGGAAGCCGTGCTCCCTCTCCCCAAGGTGACTCAGGCAGGGCC a score=566.0 s hg17.chr17_random 1967863 2 + 2618010 GA s panTro1.chr19 81224788 2 + 82489036 GA s mm5.chr11 120288356 2 + 121648857 GA s rn3.chr10 110023281 2 + 110733352 AA s canFam1.chr18 30407161 2 + 66173745 GC a score=30158.0 s hg17.chr17_random 1967865 184 + 2618010 CAAGGCCCTGCTTGCTCTCCTGGGAAG-GGCTAATCAG--ATAGAGGCGCTTGC----NTTCC---TGGATTCCATCC------GGCAGGCACGTGAAAGGGTCAGAGGTAG-CAAATTATCAGTAACG-----GTCGTCTTCCTTTCACTTGTTGACAACCCNGAAACTTTTCTTA--AAACAATGCC----CTCTGACTGGCCAGGGAAG- s panTro1.chr19 81224790 182 + 82489036 CAAGGCCCTGCTTGCTCTCCTGGGAAG-GGCTAATCAG--ATAGAGGCGCTTGC-----TTCC---TGGATTCCATCC------GGCAGGCACGTGAAAGGGTCAGAGGTAG-CAAATTATCAGTAACG-----GTCATCTTCCTTTCACTTGTTGACAACCC-GAAACTTTTCTTA--AAACAATGCC----CTCTGACTGGCCAGGGAAG- s mm5.chr11 120288472 195 + 121648857 CAAAGTCTAGCCTATTCCGCCATGAAT-GCCCTG--------AGGAGCCCTGGTGACCATTCCGAATGCCTCTCATCCACCAGGGGTAGGCACGACGAAGGGCTGAAGATGG-TAAGTTAT-AGAAAGGCCAACATCTTATCTCTTCGGCTTGTTGACAGCTCCAGGACTTTCTTGG--AGACGTCACG----GGCTGATTTGCCAGAGAAG- s rn3.chr10 110023283 194 + 110733352 CAAAGTCTAGCCTATTCCGCCCCGAATCCCCTGAGGAGCCCTGGTGACCATTCC--GCATCCT---T---TCTCATCCACCAGGGGTAGACACGACGAAGGGCTGAAGATGGTTAAGTTAT-AGAAAGG-----CCAACATTTCTTCGGCTTGTTGACAGCTCCAGGACTTTCTTAAAGAAACGTCACG----GGCTGATTTGACAGAGAAG- s canFam1.chr18 30407163 175 + 66173745 CAAGGTCCAGCT-------CTGTAAAC----TGGCCAG--GTAGGGACTATTCC-----TGCC---G-----TGATTCGCCAGGTAAAGGCCCGAGGGAACATCACAGGTGA-CAGCCCTC-AG--ACG-----GCAGTCCTCCTCCTGTCTGCTGACAGCCC-CAAACTTCTCTGG--GAACAACCCCAGGTCTCCGGCTCGCCGGGGAGAG a score=5612.0 s hg17.chr17_random 1968049 68 + 2618010 -ACCGAT-CGCATTCTAGCCCCGCGGAGGAGGACCCGGG----AGCCCGCGGGCTTCACCGCGGGTCCCGGACA s panTro1.chr19 81224972 68 + 82489036 -ACCGAT-CGCATTCTAGCCCGGCGGAGGAGGACCCGGG----AGCCCGCGGGCTTCACTGCGGGTCCCGGACA s mm5.chr11 120288667 49 + 121648857 -CTC-AC-AGCCTTCCAGCCC------AGGTAATTTGGGTAAATGCCCAAGG----------------CGAACA s canFam1.chr18 30407338 67 + 66173745 AACGGATGGGCAGTGTGGCCCCCTGG-GCGGGACCCGGG-----TCGCGGGGGCTTCACCG-GGGTCGCGGGCA a score=4202.0 s hg17.chr17_random 1968117 52 + 2618010 GGCAGGTCGCACCCGATGCCCACCTACAGGGACGCTCGCCCGGAGGCCAGGG s panTro1.chr19 81225040 52 + 82489036 GGCAGGTCGCACCCGATGCCCACCTACAGGGACGCTCACCCGGAGGCCAGGG s mm5.chr11 120288716 41 + 121648857 GACAG------CCGCATTTCCGGTTTTCGGGGAGCGCACC-----GTCTGAT a score=-2303.0 s hg17.chr17_random 1968169 82 + 2618010 GAACCCCTGGACCGGAGCCGGGCAAGCTGGTTGCTGGTGGTTACGGAGAAGCAGGGAGGCCGTGGCTCCAGATCTCAGCGCG s mm5.chr11 120288757 6 + 121648857 GCACCC---------------------------------------------------------------------------- a score=658.0 s hg17.chr17_random 1968182 12 + 2618010 GGAGCCGGGCAA s mm5.chr17 70312449 12 - 93559791 GGGACCAGGTAA a score=7612.0 s hg17.chr17_random 1968194 54 + 2618010 GCTGGTTGCTGGTGGTTACGGAGAAGCAGGGAGGCCGTGGCTCCAGATCTCAGC s panTro1.chr19 81225963 54 + 82489036 GCTGGTTGCTGGTGGTTACGGAGAAGCAGGGAGGCCGTGGCTCTCGATCTCAGT s mm5.chr17 70312461 54 - 93559791 GTGAGGAGCTGTGGGCTGGGGAGAAGCAGGCTGTGGGTAAGCCTGGATCTCAGC a score=300.0 s hg17.chr17_random 1968248 3 + 2618010 GCG s panTro1.chr19 81226017 3 + 82489036 GCG a score=300.0 s hg17.chr17_random 1968251 1 + 2618010 G s panTro1.chr19 81226020 1 + 82489036 G s mm5.chr11 120288763 1 + 121648857 G a score=14852.0 s hg17.chr17_random 1968252 250 + 2618010 TGGCTGCACCGGAGAGGTCGGCGTGACCGGGCGGGGCCTCCGCCAGAGGTAGACGGGGTCGCCCACGGCAGGGCGCGGAGCCTCTGCAGCCCGACCCTCCCGGCAGGCGAGCCCCGCAGCCTGCCAGCC-CCGGCCCATGCCG--GACGAGGACGCCACCCAGAACGCGGGCCCGGTCCCCGGGCANCGGCTGGCGCGGCGCCCCGGAAGGAANNcggccccggcgcccccgcggcccgccc--cggccccgcgc s panTro1.chr19 81226021 250 + 82489036 TGGCTGCACCGGAGAGGTCGGCGTGACCGGGCGGGGCCTCCGCCAGAGGTAGAGGGGGTCGCCCACGGCAGGGCGCGGAGCCTCTGCAGCCCGACCCTCCCGGCGGGCGAGCCCCGCAGCCTGCCAGCC-CCGGCCCATGCCG--GACGAGGACGCCACCCAGAACGCGGGCCCGGTCCCCGGGCAACGGCTGGCGCGGCGCCCCGGAAGGAAgccggccccggagcccccgcggcccgccc--cggccccgcgc s mm5.chr11 120288764 124 + 121648857 TGTCTGTACGCTACACTCCTAAGTGACCGG--------------------AGGCCAGGTTGCCT---------CGTGCGGCCTCGGAAGAC--------------------------------------------------------------------------------TCCGGTTCC--GCCAACGGCCGGTGCGTGAC---------------GCCCAGGTGACC-----GCCCTCCCCTCGTCGCCCCAC s rn3.chr10 110023578 124 + 110733352 CGTCTGCACGCTACACTCCTAAGTGACCGG--------------------AGGCCAGGTTGCCT---------CGTGCGGCCTCAGAAGAC----------------------TCGGGATCCGCCAACCGCCGGTGCGTGACGCCGAGGTGACCGC--------------------------------------------------------------------------------CCGCCCCTCGCCGCCCCAC a score=35689.0 s hg17.chr17_random 1968502 36 + 2618010 TCACCAGCCATCGCACCACACCCTCACGGCGCGCCT s panTro1.chr19 81226271 36 + 82489036 TCACCAGCCATCGCACCACACCCTCACGGCGCGCCT s mm5.chr11 120288888 36 + 121648857 TCACCAGCCATCGCACCACACCCGCACGATGCGCTG s rn3.chr10 110023702 36 + 110733352 TCACCAGCCATCGCACCACACCCGCACGGTGCGCTG s fr1.chrUn 148480417 36 + 349519338 TCACCAGCCATCGCACCATAAACGGACGATCCGCTT s danRer1.chr2 4168527 36 - 32943701 TTACCAGCCGTCACACCACACCCGGATCACCCGCTT a score=24718.0 s hg17.chr17_random 1968538 57 + 2618010 --GCCCCCCNGGCCCG-------------GCTGCTCTGCG----CCGNCTG----CAGCCCCGCG-----CCCGTTCCGGATCAT s panTro1.chr19 81226307 57 + 82489036 --GCCCCCCGGGCCCG-------------GCTGCTCTGCG----CCGCCTG----CAGCCCCGCG-----CCCGTTCCGGATCAT s mm5.chr11 120288924 57 + 121648857 --ATCTCCCGGACCCT-------------TCAGCCCAGCA----GCGCTGG----CAGCCCCGTG-----CCCGTTCCGGATCAT s rn3.chr10 110023738 57 + 110733352 --GCCGCCCGGACCCT-------------TCAGCCCAGCA----GCGCCGC----CAGCCCCGTG-----CCCGTTCCGGATCAT s fr1.chrUn 257717422 59 - 349519338 --TTTTCTCGGGAC---------------TCCGCGCTGCA----CCGCCGGGGGTCACCGCCGCA-----TCTCTCCCGGCTGCT s danRer1.chr2 4168563 81 - 32943701 CCTCTTCTCGGGGCTGTGGGTCGAGGAGCTCGGCTGTGCGCGGTCCTCCTG----CTCCCCCGCATGGCTTCCGTTCCTGATCAT a score=1000.0 s hg17.chr17_random 1968595 1 + 2618010 G s panTro1.chr19 81226364 1 + 82489036 G s mm5.chr11 120288981 1 + 121648857 G s rn3.chr10 110023795 1 + 110733352 G s fr1.chrUn 257717481 1 - 349519338 G a score=44051.0 s hg17.chr17_random 1968596 152 + 2618010 GCCCCGCANCGGCGGCGCGGACAGCCTGGCAGCTCCCGGCGANTCCGAGCGCCGCCGNCCGCCCCGCCAGGNGCACGCTCAGCGGCCGTCACGCGGGCCTCACCCGCTGCGCACGGCCAATGGCGTGCGCNGNTCGGCCCGAGCCCCGCCCC s panTro1.chr19 81226365 152 + 82489036 GCCCCGCAGCGGCGGCGCGGACAGCCCGGCAGCTCCCGGCGACTCCGAGCGCCGCCGCCCGCCCCGCCAGGCGCACGCTCAGCGGCCGTCACGCGGGCCTCACCCGCTGCGCACGGCCAATGGCGTGCGCCGCTCGGCCCGAGccccgcccc s mm5.chr11 120288982 139 + 121648857 GCACCGGA--GGCCCCCCGCAAATCCTGGCGGCTCCC-GCGACACACAGTACCGTCGCCCCGCCCTCGACGCTTGCGC------GTGCTCACGCGGATCTCACCCGCTTGGCGCAGCCAATGGCGTGCGC----CAACCAGGGCCCCGCCCC s rn3.chr10 110023796 139 + 110733352 GCACCAGA--GGCCCCCCGCAAGTCCTGGCAGCTCCC-GCGACACACAGCACCGTCGCCCCGCCCTCGACGCTTGCGC------GTGCTCACGCGGGTCTCACCCGCTAGGCGCAGCCAATTGCGTGCAC----CACCCGGGGCCCCGCCCC a score=-1241.0 s hg17.chr17_random 1968748 4 + 2618010 CNCC----------- s panTro1.chr19 81226517 4 + 82489036 cgcc----------- s mm5.chr11 120289121 15 + 121648857 CAGCCGGGCCACACC a score=-3844.0 s hg17.chr17_random 1968752 144 + 2618010 NCCCNCNNNCCGNCNCCNNNNNNNNNNNNNGNGNCNCNNNNNNCNNNNNCNGCNNCNNNNCGCNNNNNCGNNNNCGGNNNNNNNCNNGNNCNCNNNNNANNNNCNCNNNNNNNNNNNNNNCNCNNNCNATGGCGTGTGCCGC-GC s mm5.chr11 120289136 42 + 121648857 CCCCTCCGCCCAGATC-------------------------------------------------------GAGCGGC------------------------------------------------CAATGGTCTGTGTTGCAGG a score=-51.0 s hg17.chr17_random 1968896 31 + 2618010 TTTCCGAGCCNCGCCCCCCGACCCACACCTG s mm5.chr11 120289178 20 + 121648857 TGCCCGGGCTTTG-----------GCATTTG s rn3.chr10 110023935 30 + 110733352 TAGCCCGGCCACACCCCTCCGCCCA-ACTTG a score=480.0 s hg17.chr17_random 1968927 11 + 2618010 GCCTCTNCGCA s mm5.chr11 120289198 11 + 121648857 ACTTCTCCACA a score=100.0 s hg17.chr17_random 1969128 1 + 2618010 G s rn3.chr10 110024128 1 + 110733352 G a score=2685.0 s hg17.chr17_random 1969129 27 + 2618010 GCAG--ACCTGAGCCCGGGGAGCCCGCGC s panTro1.chr19 81226754 27 + 82489036 GCAG--ACCTGAGCCCGGGGAGCCCGCGC s rn3.chr10 110024129 25 + 110733352 GCAGGCACCTCAGT----GGTGCATGTGA a score=2560.0 s hg17.chr17_random 1969156 8 + 2618010 CGACCACT s panTro1.chr19 81226781 8 + 82489036 CGACCACT s rn3.chr10 110024154 8 + 110733352 CAGTCATT s canFam1.chr18 30408178 8 + 66173745 CAGTCATT a score=600.0 s hg17.chr17_random 1969164 2 + 2618010 CG s panTro1.chr19 81226789 2 + 82489036 CG s canFam1.chr18 30408186 2 + 66173745 CG a score=200.0 s hg17.chr17_random 1969164 2 + 2618010 CG s canFam1.chr18 30408186 2 + 66173745 CG a score=124621.0 s hg17.chr17_random 1969166 331 + 2618010 GGGACAC-CGGAAGCCAGTGCAGAAACNGTTTAATAGAAATAAAAAGGTCTGCATAGAGCCGAGGCTCGG---AGCCACCCCTCTGCCGCACATCCAGTACAG--AGAGGATTCTATAAAGTTCACACTTTTTCATTAAGTAGTAGTAGAAATACGGTGAGG-CCCTGAGACTGGCCTGGTGAGCGAGGAAAGGCCGCTGGGCGCTTCCACT-----------CTGCAGGCCGGGGCT-GAAATAACCCGAGTTCCGTTCTCACAGAAAGGTGCGGCTGCCACCTCTTGACACAGAGGCCGGATGGGCAGGTGTCCTC--GATGGCCAGG-CCGTATCAGGGTACAACCGCAG s panTro1.chr19 81226791 330 + 82489036 GGGACAC-CGGAAGCCAGTGCAGAAAC-GTTTAATAGAAATAAAAAGGTCTGCATAGAGCCGAGGCTCGG---AGCCACCCCTCTGCCGCACATCCAGTACAG--AGAGGATTCTATAAAGTTCACACTTTTTCGTTAAGTAGTAGTAGAAATACGGTGAGG-CCCTGAGACTGGCCTGGTGAGCGAGGAAAGGCCGCTGGGCGCTTCCACT-----------CTGCAGGCCGGGGCT-GAAATAACCCGAGTTCCGTTCTCACAGAAAGGTGCGGCTGCCACCTCTTGACACAGAGGCCGGATGGGCAGGTGTCCTC--GATGGCCAGG-CCGTATCAGGGTACAACCGCAG s mm5.chr11 120289489 314 + 121648857 GGGACAC-C--AAAGCAATTGAGAGAT-GTTTAAT---------AAGACTTGCTCAGACTGGAGGCTTAGTTAGATTCTCCCTGTGCCGCATACCCAATACAGAAAAAGGCTTCTATAAAGTGAACACTTGTACG-TGATAAGGAGTAGAAAGA--GGGAGG-CCCTGAGACTAGCCTGGAGAGTGAGGTAAGGCAGTGGTGGACTCTC--------------CTGCTGGCCAGGCCTGGGAAGGGCCGGAGCTC--TTCTCACAG--AGGCCTTGCTGCCACCTTTGTACAGGGGTGAACAGGAGGGAGGTGTCCTT--GAAGATCAAGCCCATAGCGGGG--CAGTCACAG s rn3.chr10 110024162 310 + 110733352 GGGACAC-C--GAGGCAATAGAGAGAT-GTTTAAT---------AAGACTTGCTCAGACCGGAGGCTTAG----ATCCTCCCTGTGCCGCATACCCAATACAGAAAAAGGTTTCTATAAAGTGAACACTTTTAAG-TAGTAAGTAGTAGAAAGA--GGGAGG-CCCTGAGACTAGCCTGGAGAGTGAGGTAAGGCAGTGGTGGACTCCT--------------CTGTGGGCCAGGCCTGGGAAAGACGGGAGCTC--TTCTTGCAA--AGGCCTTGCTGCCACCTTTGTATAGGGGGGGATAGGATGGAGGTGTCCTT--GAAGATCAAGCCCGTAGTGGGG--CGATCACAG s canFam1.chr18 30408188 325 + 66173745 AGGACACGCGCGAGACAGTGCAGAGAC-GTTTAATAACAATAAAAAGGCCTGCTGAGAGCCCAGGCTCAG---AACCACCCCGCCGCCGCACACCCAGCACAG-AAAAGGTTGCTGTAAAGTTACCATGTTTTAG-TAAGAAGCAGTAGAAAGG-GTTGAGGCCCCTGAGACTAGCCCGGCGGACCAGGTAAGGCAGCCGCGTGCTCCCCCTCCCCCCCTCCCCAGCCGGCCGGCCGC-AAAATAACCCGAGTTCTGTCCTCGCAGGAAGGCATGACCGCCGCC----------AAGGACGGGTG---AGGCATCCTCCGGAGGCCCAGG-CCG----GAGG--CGGCCACAG a score=20776.0 s hg17.chr17_random 1969497 157 + 2618010 CAGTGCAAGGGG--CTTC-CTCAAGGACAAATGGCTAAAAATGTCACGGT----GAAAATGTCATCCCCAA----AGAGTTCGTTCTCCCTAGACCCGT-GGGGGCAACCCAGCCTTCACCGTGACACTG------------------------GCCATCTGCAAAGTGC-------CAACTGTTC--------TTCATCG-AGCACGT s panTro1.chr19 81227121 154 + 82489036 CAGTGCAAGGGG--CTTTTCTCAAGGACAAATGGCTAAAAATGTCACGGT----GAAAATGTCATCCCCAA----AGAGTTC----TCCCTAGACCCGT-GGGGGCAACCCAGCCTTCACCGTGACACTG------------------------GCCATCTGCAAAGTGC-------CAACTGTTC--------TTCATCG-AGCACCT s mm5.chr11 120289803 171 + 121648857 CAGTGCAAGAGAGCCTTTCCACAAGGACAAATGGCTAAAGACGAC-----------------CGTCACCGC----GAAGCCGGCACCCACTAGAGCCGGAGGGGGCACTCTCGCCTTCACGGCGACACGGGCGGAGCCCCTGAACAAGGGTCAAGCCATCTGCAAAGTGC-------CAACTGTTC--------TTTGTC--AACTCCG s rn3.chr10 110024472 186 + 110733352 CAGTGCAAGTGAGGCTTTCCACAAGGACAGATGGCTAAAAACGAC-CGTCACCAGGAAGTGTCACCCCCAACCCCAGAGTTC-TTTCCACTAGATCTGGTGGGGGCACTCTAGCCTTCACTGTGACACAG-----GACCCTAAACATGGGTCAAGCCATCTGCAAGGTGC-------CGACTGCTC--------TTTGTCA-ACACCGG s canFam1.chr18 30408513 132 + 66173745 CAGTGCAGGGGG--CTCC-CGCCGGGACCCAGGGCTAAGCGCGTC--------------------ACCCCG----GGAGCACG---CTCCGGGCCCCGG-GCCGGC-------CCCTGAGTAAGACTTCT------------------------GCCGTCCGCAAAGTGC-------CAAGTGTTC--------CTGTCCACAGCCCCA s danRer1.chrUn 140256572 168 - 367113659 CACTGCAGAGG---TTTTACTCTTCTACCAGTGGTTTAAAAAACC-CTTC----AGAAAACCAGTTATCAA----TAGGTTT----TTTTTTAACCTGT-AAACGTGACGCA-CCCTGAACACAAGTCTA----------------------AACCAAGCTAAAGTGTGTGTTTGAGCAGCTGTGTGGGTGACGTATACCT-AACATGA a score=162926.0 s hg17.chr17_random 1969654 219 + 2618010 -GATTACGTCACTTTCTTCCTTTTTGTGCGTTTTGTGCAGCCCCTGCCAAACCAGCCCCCTAGGAT---GGGGGCCGAGCTAAGCGGTGCACCC-----CGGTCCCCA-GGCGGGGCCTCCTCT----------------CTGCTTCT------GCACAGCGACTTC-CGACTGTGGCTGCCTTCNTTNCANCAGCACGCAGGGGAGTCGCCAGTGAGAAAATGGGATCCTGCCACCTGCCAAAA-AGGGAAA s panTro1.chr19 81227275 217 + 82489036 -GGTTACGTCACTTTCTTCCTTTTTGTGCGTTTTGTGCAGCCCCTGCCAAACCAGCCCCCTAGGAT---GGGGGCTGAGCTAAGCGGTGCACCC-----CGGTCCCCA-GGCGGGGCCTCCTCT----------------CTGCTTCT------GCACAGCGACTTC-CGACTGTGGCTGCCTTCTT--CACCAGCACGCAGGGGAGTCGCCAGTGAGAAAATGGGATCCTGCCACCTGCCAAAA-AGGGAAA s mm5.chr11 120289974 219 + 121648857 -GGCTATGCCACTTTCTTCCTTTTTGCACGCTTGGCACAACCCCTGCCAAACCAGCCTCCTAGGATAGGGGGAGCTGAGGCAAGGGGGTCACTC-----TGGTCCCCA-GGTGGGGCTTCTTCT----------------CTGCTTCT------GCATAGTGACTTC-CTACTGTGGCTGCCTTCTT--CACCAGCACGGAGGGGGGTCGCCAAGGAGAAGATTGGATCCTGCCACCTAACAGAA-A-GAAAA s rn3.chr10 110024658 219 + 110733352 -GGCTACGCCGCTTTCTTCCTTTTTGCACGCTTAGCACAGCCCCTGCCGAACCAGCCTCCTAGGATGGGGGTGGCTGAGGCAAGAGGGGCACTC-----TGGTCCCCG-GGTGGGGGCTCTTCT----------------CTGCTCCT------GCACAGTGACTTC-CTACTGTGGCTACCTTCTT--CGCCAGCACGGAGTGGAGTTGCCAAGGAGAAGATTGGGTCCTGCCACCTAACAGAA-A-GGAAA s canFam1.chr18 30408645 217 + 66173745 -GGTTACGTGATCTTCCTCCGCTTTGTGCGTTTGGCGCAGCCCCTGCCAAACCAGCCACCTAGGAC---AGGGGCCGAGCTCAGGGCCGCACCC-----CGGTCCCCA-GGCGGAGGGTCCTCT----------------CGGCTTCT------GCACAGCGACTTC-CGACTGTGGCTACCTTCTT--CACCCGCACGCAGGGGAGTGGCCAGGGTGAAGATGGGGTCCTGCCACCTACCGGAA-AGGGAAA s fr1.chrUn 148482219 212 + 349519338 -GGCTACGATGCTTTTTTCTTCTTCCTGCCTTTGCCATAGCCTCGCCCAAACCAGCCGCCGTGCAC---GATTGGCG-------------ACTG-----CTGCCCGGA-AACAGACGAGCAGTC----------------CTGCTGATGGAGAGGCGCGATGACCTCACGGGTGCTGCTGTCCTCCT--CCTCTGGCTGCAGGGGTGTGGCGAGACTGAAGATGGGGTCCTTTGCTCTGAGGAAACAGAGTAA s danRer1.chrUn 140256740 221 - 367113659 ACTCTAGGAACTCTTCTTTTTCCGTCTTCCTTTGGAGTAACCTCTTCCAAACCAGCCGCCCTGAAC------CGCTG------GCCCTTCACCCTGTGGCGGTGCTGACTGCGAAACCTCCTCTAAAGCAGAAGGTGGCGCTATCTCT----------------TTA-CGAGAGTGACTCTTCTGCT--CTTGCGGACTGAGGGGTTTAGCCATGCTGAAGATGGGGTCCTGCAATCTGTAATTA-AGAATAA a score=1500.0 s hg17.chr17_random 1969873 1 + 2618010 G s panTro1.chr19 81227492 1 + 82489036 G s mm5.chr11 120290193 1 + 121648857 G s rn3.chr10 110024877 1 + 110733352 G s canFam1.chr18 30408862 1 + 66173745 G s fr1.chrUn 148482431 1 + 349519338 G a score=437347.0 s hg17.chr17_random 1969874 1079 + 2618010 CGGCATCAGGCGGGCCTGGGAGCCTCTCGCAGTCACACCTGCCCCAGCTCGGG-AAAGCTGTCTGCGGTC--CCTGCCTTCCCATCCCCTTCCCT---CCCGTGTCA-ACTGCGGCGGGGCTCTGGTTGGCGGCAGCTTCATTGTTACCAAGCTGCAGAACGGATGTGGGAGAGGTCACCTCTTAGGTGGTGACTCAAAGGTCGGCACCCAC---ACTAGCTCGGTCTCCTCAAAACTCCGTGTCCTTGTCCACCACTGAGCGGCG--TGCACACACAGGGTGGGGCAGCAGTGGCCCCAGGGCTGCCTCCGTCTCCAGGGATGAGTCACTAGCAACTCTGGGCCCCACCTTCCACTTGTACCGCT-GGGGCAGGTGGACCAGACCCTCTCCCCCTTCCCA--------------------------------------------GCTGACTAGGGAGGCGTGGCCTACAGACGACCCCGTGAAGAAAGCATGTGTCTGACGGAGATGCAGAACCACAGATCAT--AACTTAAGATACAGATACGCACTGA-TAAGGAAAATGAGCTAAGTTAATGT--------AAAAAAAAAATACA-------------------------------------GTACACGATA-G--CCCACATCACAGAACACCACACACATAACATACAAGAAGTGCCAGGCCCAGAAGGTGAAGGGATCCTTAATTTCTTGAACCCTTTGATTAAAAGAAGTTATTGATTTCCCCTATAAGACCCTGAAAATTCACAGAGAAAGAGAGTGTAAACTTTTTACTCAATACATACACCAAGTCTAAATTATCACAAATTCTGTATTAAGGCACAGTTTGTTTAAGCTTTCCCAAAGTACGCCAACTCCCAAAACCAAGCACAC--AGATTCTGTCTGACCAGAGCTGCCGAGTGCTCGTCCCCTCCAGATGC--TTCCCACCAGG--------CATCTCGGAGAGCTCCACGGGGA--GGCCTGGAGCAGGAGCACGCGGGCAGAATCCCTCTCCCCGCGGGGNANTTGTGTGTGCCACATCAGCCAGGGCAGGAGTG-GCACACGCAGGGNTCTCCGCCAACCACCGAGGTCAGGCCCTCTGGAGACCACCACNGCTTCAGTCATGCCTCAGGCACCACTGCAAACACCTCAGAGCTTCCTCCACACTCA-GNCTCAC s panTro1.chr19 81227493 1076 + 82489036 CGGCATCAGGCGGGCCTGGGAGCCTCTCGCAGTCACACCCGCCCCAGCTCGGG-AAAGCTGTCTGCGGTC--CCTGCCTTCCCATCCCCTTCCCT---CCCGTGTCA-ACTGCGGCGGGGCTCTGGTTGGCGGCAGCTTCATTGTTACCAAGCTGCAGAACGGATGCGGGAGAGGTCACCTCTTAGGTGGTGACTCAAAGGTCAGCACCCAC---ACTAGCTTGGTCTCCTCAAAACTCCGTGTCCTTGTCCACCACTGAGCGGCG--TGCACACACAGGGTGGGGCAGCAGTGGCCCCAGGGCTGCCTCCGTCTCCAGGGATGAGTCACTAGCAACTCTGGGCCCCACCTTCCACTTGTACCGCC-GGGGCAGGTGGACCAGACCCTCTCCCCCTTCCCA--------------------------------------------GCTGACTAGGGAGGCGTGGCCTACAGACGACCCCGTGAAGAAAGCATGTGTCTGACGGAGATGCAGAACCACAGATCAT--AACTTAAGATACAGATACGCACTGA-TAAGGAAAATGAGCTAAGTTAATGT------AAAAAAAAAAAATACA-------------------------------------GTACACGATA-G--CCCACATCACAGAACACCACACACATAACATACAAGAAGTGCCAGGCCCAGAAGGTGAAGGGATCCTTAATTTCTTGAACCCTTTGATTAAAAGAAGTTATTGATTTCCCCTATAAGACCCTGAAAATTCACAGAGAAAGAGAGTGTAAACTTTTTACTCAATACATACACCAAGTCTAAATTATCACAAATTCTGTATTAAGGCACAGTTTGTTTAAGCTTTCCCAAAGTACGCCAACTCCCAAAACCAAGCACAC--AGATTCTGTCTGACCAGAGCTGCCGAGTGCTCGTCCCCTCCAGATGC--TTCCCACCAGG--------CATCTCGGAGAGCTCCACGGGGA--GGCCTGGAGCAGGAGCATGCGGGCAGAATCCCTCTCCCCGCGGGG--ATTGTGTGTGCCACATCAGCCAGGGCAGGAGTG-GCACACGCAGGG-TCTCCGCCAACCACCGAGGTCAGGCCCTCTGGAGACCACCAC-GCTTCAGTCATGCCTCAGACACCACTGCAAACACCTCAGAGCTTCCTCCACACTCA-G-CTCAC s mm5.chr11 120290194 1022 + 121648857 CAGCATCAGGCAGGTCTGAAAACCCCTCGAATCGCAACCCTCCCAGGCACAGG-AAAGCTGTCTGAGGCCA-CCTGCCATCCCA--------------CCTATGT----CTTAATCTGGGCTTTGGCTGGAAGCAGCGTCAGTGACACCAAGCTGCA-----------GGGGACACCAAGCTGCAGGGGAAAGTCTTCAGGGCAGCAGCAGC---CCTCGCTCGACAGCCTC----TTCTGT---CTCACCCACTGTTGGTGGGAGC-TGCACACATAGGAAGGGGTAGTGCTAGCCACAGGATGGCCT-CACCTCCAAGGATAACTTGCTAGCAACTCTGGGCCCCGTCTCTCACTTGTATGGATAGGGGCAGATGGACCAGACCCTTTTCCCTTTCCCAGACTGCGTGAC--AGGGATGGGGGC-------GGGAAGAGGCCGGTTGACTGGGGAGGTGTGGCCTACAGACTACACCATGAAGAAATCATGTGTCTGATTGAAATGTAGAACCACATATTAT-AAACGTAAGATAAAAGTAAGCACTGA-TTA-AAAAATGAGCTAAGTTAATGTT-----AAAAAAAAAAAAAACA----ACAACAACAACCAATAACAACATCAACAATGTGGCACAGGAGAGG--CCCACGTCACAGAACACCACAAACATAACATACAAGAATTGCCAGGCCCAG-AGGTGAAGGGATCCTTAATTTCTTGAACCCTTTGATTAAAAGAAGTTATTGATTTCCCCTATAAGACCCTGAAAATTCACAGAGAAAGAAAGTGTAAACTTTTCACTCAATATACACACCAAGTCTAAATTATCAC-AATTCTGTATCAAGG--CAATTTGCTTCAGTTTTCCCCAAATA-------TCCCCACACCAAGGACAG--AGATTGTGTCTGACCAGAGCTGC--AGTTCTCACCCCTCTCGGCTG----TCCACCCAGGCTGCACACCATCTGTGGGAGC------------ATCCTGTA----GAGCACACTGGCAGA------TCCCCCTCAGAG--ATTCTGGGCACCGTACCAGTCAGGGGGGAAGAGTGTGCACGTGTGG------------------------------TGGA----------GCCT------TGCCTCA---------GCCAGTCCCTCTGAG----------------G-CCCAC s rn3.chr10 110024878 1021 + 110733352 CAGCATCAGGTAGGTCTGGAAACCCCTCAAATCACAACCCTCCCAGGCACAGGTAACGCTGTCTGAGGCCG-CCTGTCATCTCGCCCCTTCCCCTAGGTCTGTCTTAGACT--GGTTGGGCTTTGGCTAGAAGCAGCTTGGGTGTCAC-------AAGAAGAGCCACAGGGGAAG--ATCTTCCTGGACCCAACTCAAAGGCCAGCAGCAG-----------------CCTC----TTCTGTGT-CTCACCCACTATCAGTGGGATC-TGCACACTTAGGAGGGGGCAGTGCTAGCCACAGGATGGCTC-CATCTCCAAGGATAACCTGCTAGCAGCTCTGGGCCCCACCTTTCACTTGTATGGATCGGGGCAGGTGGACTGGACCCTTTTCCCCTTCCCAGACTGCGTGAC--GGGGATGGGGTT------GGGGGGGAGGCCAGTTGACTAGGGAGGCGTGGCCCGGAGACTACACCATGGAGAAATCATGTGTCTGATTGAAATGTAGAACCACATATTTAGAAACGTAAGATACAAATAAGCACTGAGTTAAAAAAATGAGCTAAGTCAATGTTTGAAAACGAAAAGAAAAAACACCCAACGACAACAG-------------AAACAATGTGGCACAGGAGA-GGCCCCACGTCACAAAACACCACAAACATAACATACAAGAATTGCCAGGCCCAG-AGGTGAAGGGATCCTGAATTTCTTGAACCCTTTGATTAAAAGAAGTTATTGATTTCCCCTATAAGACCCTGAAAATTCACAGAGAAAGAAAGTGTAAACTTTTCACTCAATATACACACCAAGTCTAAATTATCAC-AATTCTGTATCAAGG--CAATTGGCTTAATTTTTCCCCAAATA-------CCCCAAAACCAAGGACAC--AGATTCTGTTTGAGCAGGGTTGCACAATTCTCACCCCTCACG--------------CAGG-----------CTGATAAGGATCTGTGGGGAGCATCCTGTA----GAACACACTGGCAGA-CCCCCATCTCCTCAGAG--ATTCTGGGCACCATAAC-----------------GTGGAAAAGTGT-----------------------------TCGGATGT-------GGTACAGTCTTGCCCCA---------GCCAGTTCCTCTGAG----------------G-CTCAC s canFam1.chr18 30408863 1054 + 66173745 CTGGGTCAGGTGTGCCTGGGGGCCTC----GGCACAACCTGCCCCAGGGCGGG-AAAGCTGACTGAGGTCGCCCTGC--TCCCCTC------------CCGATCTTA-ACTGTGGCCAGCCTTGGCTTAGCGGCAGCTCCACTGTTCCTGAGCTACAGAACAGCGCCAAGAGGAGTAAGCTCCCAGG----AACTCAAAGGTCAGCGCTCACACTACTAGCTCAGCCTCTGCAGAA--CTGTGTCCGTGCTGGCGATGGAGCAGGCCGTGCACACCCAGGGTGGGGCAGGAGTAGCCCCGAG---------------AGGGACGGATCACTAGCAGCTCTGGGTCCCACCTTTCACTTGTATGGCCAGGGGCAGGTGGACCAGACCCTCTCCCTCTTCCCAGGCTGCAAGACCTGATGGTGGGGGGCTGGGGGGTGGGGAGGCCAGCTAACTAGGGAGGCGTGGCCTATAAACTACACCATGAAGAGATCATGTGTCT----GAGATGCAGAACCACATATTAT-AAACTTAAGATACAGATAAGCACTGA-TAAAGAAAATGAGCTAAGTTAATGT------AAAAAAAAAAAAAAAA-------------------------------AGTACGGTACACAATAGG--CCCACATTACAGAACACCACAAACATAACATACAAGAATTGCCAGGCCCAGAAGGTGAAGGGATCCTTAA-TTCTTGAACCCTTTGATTAAAAGAAGTTATTGATTTCCCCTATAAGACCCTGAAAATTCACAGAGAAAGAAAGTGTAAACTTTTTGCTCAATACATACACCATGTCTAAATTATCACAAATTCTGTATTAAGGTACA----GTTTAAGTTTCCCCAAAGTATGCCAGCTCCCCAAACCAGGTGCACCAAGAATCTGTTTGACTGGAGTTGCCGAGACCACGTCCCTTCGAGGCACCTTCCCGTCCAGG-----------CTGTCTAAGGTAGAAGGGGG--CGCTCCAG----GCACACACTGGCACATTCCCTCTCCCCACAGGG--A--------GTCACATCA----------------GCCTTCGCTGAT-------------GCCTCAGCCACTCCCTGCAGAGGTCACCAA-GCTGCAGTCACACCTCAGACGCCATCTGCAACATCTCAGAGCATTCTCTATGCTCAGG-TTCAC a score=19781.0 s hg17.chr17_random 1970953 43 + 2618010 GAGAGAAGACAGACAAGGCCCAGCACACAGAGGTGCGGG--GAAG s panTro1.chr19 81228569 43 + 82489036 GAGAGAAGACAGACAAGGCCCAGCACACAGAGGTGCGGG--GAAG s mm5.chr11 120291216 42 + 121648857 ---AGCAGACAGACACGGCCCATCACACGGAGGGGAGGGACGGGG s rn3.chr10 110025899 40 + 110733352 ---AGCAGACAGACACGGCCCATCACACAGAGGGGCAGA--AATG s canFam1.chr18 30409917 42 + 66173745 GAGTAAAGACAGACACGGCCCATC-CACACAGGGGCAGG--GAAG s galGal2.chr3_random 672715 39 + 1636275 GAGAGAAGGAGGTGAGGGCGGGGG----GGCGGCCCACG--GCGG a score=-15911.0 s hg17.chr17_random 1970996 20 + 2618010 CAGGC---TGCTGCAGCG----------GCTCA s panTro1.chr19 81228612 20 + 82489036 CAGGC---TGCTGCAGCG----------GCTCA s mm5.chr11 120291258 28 + 121648857 CAGG-----AATGCAGGGGGCACGCTGCGCCCA s rn3.chr10 110025939 17 + 110733352 GGGCC--ATGCTGC--------------ACCCA s canFam1.chr18 30409959 22 + 66173745 GGGCGG-ATGCCCCCGTG----------CCCCC s galGal2.chr3_random 672754 29 + 1636275 CCGTCGTGCCCCGCAGCGCTCCCC----GCCCG s fr1.chrUn 148482493 15 + 349519338 ------CAAGCAGCTCCG------------TCT a score=195568.0 s hg17.chr17_random 1971016 128 + 2618010 CTCACCTGCTATAGGCGGGGATCTCCAAGCCCAGNCTCGGCCATGAGGAGCCGCATGACGTCATCACACTTCCCATGTAGCTTCAGGGCAGCCCAGTCATCCTTCGGGGTCCACTGAG--GACAGGGAAA s panTro1.chr19 81228632 127 + 82489036 CTCACCTGCTATAGGCGGGGATCTCCAAGCCCAG-CTCGGCCATGAGGAGCCGCATGACGTCATCACACTTCCCATGTAGCTTCAGGGCAGCCCAGTCATCCTTCGGGGTCCACTGAG--GACAGGGAAA s mm5.chr11 120291286 127 + 121648857 CTCACCGGTTGTAGACAGGAATCTCCAGGCCCAG-TTCATTCATGAGGAGTTGCATGACATCATCACACTTCCCATGGAGTTTCAGGGCAGCCCAGTCATCCTTCGGGGTCCACTAAA--GACAAGGAAG s rn3.chr10 110025956 127 + 110733352 CTCACCGGTTGTAGACAGGGATCTCCAGGCCCAG-TTCGTCCATGAGGAGCCGCATTACATCATCACATTTCCCATGAAGCTTCAGGGCAGCCCAGTCATCCTTCGGGGTCCACTGGG--GACAAGGAAG s canFam1.chr18 30409981 127 + 66173745 CTCACCTGCTATAGGGGGGGATCTCCAGGCCCAG-CTCATCCATGAGGAGCTGCATGACGTCATCACATTTCCCATGTAGCTTCAGGGCAGCCCAGTCATCCTTCGGGGTCCACTAGG--AACAGGGGGA s galGal2.chr3_random 672783 118 + 1636275 CTCACCGCTCGTAGCCGGGGATCTGCAGGCCCAG-CTCCTCCATCAGCAGCCGCATGACGTCGTCGCAGCGGCCGTGCAGCTTCAGGGCAGCCAGGTCGTCCTTGGGCGTCCACTGCG-----------A s fr1.chrUn 148482508 129 + 349519338 GTCACCTGTCGTATGCAGGAATCTGAAGGTTCAG-CTCCTCCATGAGAAGGCTCATGACGTCATCACACCTGCCGTGGATCTTCAGTACGGCCAGATCATCTTTTGGCGTCCACTAAAATAAAAGGGAAA s danRer1.chrUn 140258270 127 - 367113659 CTTGCCTGCTGTAAACGGGACCTGCTAAAGCCAG-CTCCTCCATCAACAGAGCCATCACAGCGTCACACTTCCCGTGAATCTTCAGAGTGGCCAAGTTATCTTTTGGTGTCCACTAAA--GGAGGAGAAC a score=0.0 s hg17.chr17_random 1971144 14 + 2618010 GCCGAGTGAGAGTA a score=1343.0 s hg17.chr17_random 1971144 14 + 2618010 GCCGAGTGAGAGTA s panTro1.chr19 81228759 14 + 82489036 GCTGAGTGAGAGTA s mm5.chr11 120291413 11 + 121648857 GCAGA-TGAGGG-- s rn3.chr10 110026083 11 + 110733352 GCAGA-TGAGGG-- s canFam1.chr18 30410108 12 + 66173745 GGCGAGTGAGGA-- s galGal2.chr3_random 672901 12 + 1636275 GGCGACAGCGGG-- a score=-36094.0 s hg17.chr17_random 1971158 174 + 2618010 ACAGCAGCCCAACCCTTCCCGGTGGCCTGTCAGCCTTGGCCCCTACGGGCTCAGTCGGTGCTCCCTGAGCACCCACGGGGGCCC-TATCAGACCGCCCTGGTGCATGGGTG---TGG--GGTGTCTCTGGCTGTGCGT-TCTAAGACCCAGATCTAAGGACGTGGCTCTCAGCACCCGA-----GT s panTro1.chr19 81228773 174 + 82489036 ACAGCAGCCCAACCCTTCCCGGTGGCCTGTCAGCCTCGGCCCCTACGGGCTCAGTCGGTGCTCCCTGAGCACCCACGGGGGCCC-TATCAGACCGCTCTGGTGCATGGGTG---TGG--GGTGTCTCTGGCTGTGCAT-TCTAAGACCCAGATCTAAGGACGTGGCTCTCAGCACCCGA-----GT s mm5.chr11 120291424 125 + 121648857 --------------CCTCCCGGCAGACTGGC-----------------------TCACCACTCCCCAGGAACACAATGGAACCTGTACAAGACT---------------TT---CAG--GATCTCCCCGGCTCTTCCCATCTGAGCCCCGGGTCTGAGGAGGAAGCTCTAAGCACCCGC----TGT s rn3.chr10 110026094 151 + 110733352 -------CCAACTCCCTACCCTTTGCTTGTC---CCTGGCAGACTGGGACACACTTGAACCTG----------------------TACAAGGCTTTCAGGGTGTACAAGTG---TGGCACGTCTCCCTGGCTCTGCCGGTCTAAGGCCCAGGTCTAAGGAGGAAGCTCTGAGCACCCACCCACTGT s canFam1.chr18 30410120 137 + 66173745 ----CATCTCACTTCTTTGCAATGGCCCTTT------------------CTCAGCCAGACCTCTGTGGCC---------------CATAAGTTT-----GGGACACGAATGCCCCAG--GAACTCTCTGGTTCTCCTGCTCTAAGGTCCAGATCTAAGGAGGTGTATCTTGGTGTGCAA-----CT s galGal2.chr3_random 672913 71 + 1636275 ----------------ACACCGCGGCGCTGC-------------------------AGCACCCGCTGCGA-------GGGGCTT-CACCCCACC---------------TC---CCG----------------------------GCCCAGGACTGGGAAGGCG--------------------CT s danRer1.chrUn 140258397 96 - 367113659 ACAGCAAGCGGTCAGTTTACGACGTCAAGCA------------TAAGTGTTCAGTGTGTG------GAAAACAGACGGAT-----CAACAGATT--------------ATG---AGC--GGT-----------------TTTGTGATGGAAATAT------------------------------- a score=130365.0 s hg17.chr17_random 1971332 86 + 2618010 TACCTGCAGGTTCACGATGTAAAGCTTCGGCCGCCGGNCTAGGGGGCTTGGTCATGCACCAGAGGCGTGGGTACTTCTTTAGAANC-- s panTro1.chr19 81228947 83 + 82489036 TACCTGCAGGTTCACGATGTAAAGCTTCGGCCGCCGG-CTAGGGGGCTTGGTCATGCACCAGAGGCGTGGGTACTTCTTTAGAA---- s mm5.chr11 120291549 83 + 121648857 TACCTGCAGGTTCACGATGTAGAGTTTGGGTCGACGG-CTTGGAGGCTTCGTCATGCACCAGAGGCGGGGATATTTCTTTAGTA---- s rn3.chr10 110026245 83 + 110733352 TACCTGCAGGTTCACAATGTAGAGTTTGGGCCGACGG-CTTGGGGGCTTCGTCATGCACCAGAGACGGGGGTACTTCTTCAGTA---- s canFam1.chr18 30410257 83 + 66173745 TACCTGCAAGTTCACGATGTAGAGCTTGGGCCTCCGG-CTGGGGGGCTTGGTCATGCACCAGAGGCGAGGGTATTTCTTCAGAA---- s galGal2.chr3_random 672984 83 + 1636275 CACCTGCAGGTTGACGATATAGAGCTTTGGACGACGA-GGTGGGGGTTTGCTCATGCACCAAAGGCGGGGGTATTTTTTCAAAA---- s fr1.chrUn 148482691 83 + 349519338 TACCTGCAGGTTGACGATGTACAGTTTGGGTCTTTTG-CTTGCTGGTCTGTTCATGGACCACAGACAAGCGTACTTCCTTAGCA---- s danRer1.chrUn 140258493 85 - 367113659 TACCTGTAGATTGACAATGTACAGCTTTGGTCTTTTG-CTTGCAGGTCTATTCATGCACCACAAGCAGGAGTACTTCTTCAACA--CC a score=-39074.0 s hg17.chr17_random 1971418 77 + 2618010 NCTG---------------------------------------------------------------------------------TGGAAGCAGACAGACAGAC----ACCG-----CACACACACAAGGG---ACAAGTCT-----------------GTACAGTGCTGGGC---------CGCAGA----GCTGGACA s panTro1.chr19 81229030 77 + 82489036 CCTG---------------------------------------------------------------------------------TGGAAGCAGACAGACAGAC----ACCG-----CACACACACAAGGG---ACAAGTCT-----------------GTAGAGTGCTGGGC---------CGCAGA----GCTGGACA s mm5.chr11 120291632 78 + 121648857 CCTG---------------------------------------------------------------------------------TTCCAGCGGGCAGACACA-----------------ACAGAGTAGAG---GAGGATGA-----------------GTAAGACGCAAACCTACCACCCGCTCACG----GCTGATGG s rn3.chr10 110026328 76 + 110733352 CCTG---------------------------------------------------------------------------------TACGAGTGGACAGACAC------------------ACGCAGTAGAG---GACGATGC-----------------TTTAGATGCCAGTCTACTGCC--CGCTGGT---GTTAATAG s canFam1.chr18 30410340 93 + 66173745 CCTG---------------------------------------------------------------------------------CACGAATGGACGGACAGACAGAAAGAG-----CCCATGCACAAGAGCAAACGAAGCC-----------------ACAGGAAGCTAGGGTCCGA----CACTGATCCAGCTAGGGA s galGal2.chr3_random 673067 193 + 1636275 CCTGCCACAAAACAGAACTGATCAGCACAGCCAAAGGCACGCGTAACCCTGAACCGTAGCAGCGAGAGGAGAAGGAATGTATTACCAGGAGGGGAAAGAGGGAGGAAGAGAGACTATCACACAGATGGTGG---GCGAATCCTGACACCAGAGTTTACAGTTGTCTGTTTGGGAGGAGACTGCTCAGC----ACCAAGGT s fr1.chrUn 148482774 88 + 349519338 CCTG---------------------------------------------------------------------------------TATCAGCAATGAGGAGTGAAGTCGAGGTATGAAATATAAATATGAC---ACCAGTTT-----------------GCACAAATACAAAATG-------CTCAAT----GTTGAAAC a score=354328.0 s hg17.chr17_random 1971495 310 + 2618010 CCCTCGGGCAGGCAGG-------------NGCTCGGTTCAC--------TCATTG---TGTCATCGGCACGTACCTTCAGGCTGGACCCTAGACACAGGATGGTGTCTGCTCTGCTGGCAGCCTCGGTCGCCGCNTTCCCAGTTCAAAGGCTGCCCCAACGTCCCCCTCTCCCCAAAGTGCACAATGGTGTCCCGCAGCTGGGTCCCACACTTGTGGCAGGTCCGGCCTGTCTGGTGTCTGTGGAGGGCAGTGCGCTCCGTCACATCGAACACCCGCACGTACTCCCTGTTGGGAACGCAGGAGGTACAGACCT--------AGAGGCAAGA---------------------------------GGGCACAGTG s panTro1.chr19 81229107 309 + 82489036 CCCTCGGGCGGGTGGG-------------GGCTCGGTTCAC--------TCATTG---TGTCATCGGCACGTACCTTCAGGCTGGACCCTAGACACAAGATGGTGTCTGCTCTGCTGGCAGCCTCGGTCGCCGC-TTCCCAGTTCAGAGGCTGCCCCAACGTCCCCCTCTCCCCAAAGTGCACAATAGTGTCCCGCAGCTGGGTCCCACACTTGTGGCAGGTCCGGCCTGTCTGGTGTCTGTGGAGGGCGGTGCGCTCCGTCACATCGAACACCCGCACGTACTCCCTGTTGGGAACGCAGGAGGTACAGACCT--------AGAGGCAAGA---------------------------------GGGCACAGTG s mm5.chr11 120291710 324 + 121648857 CTCT-GGGGAGGCAAGCCAGCAAC----ATGCTCAATCCAC-AACGAGTTCATGG---TATGGTCGGCACATACCTTCAAGCTGGACCCTAAACACAGGATTGTGTCTGCTTTGCTAGCAGCCTCGGTCGCTGC-CTCCCAGTTCAGAGGCTGCCCTAATGTCCCCCTCTCCCCAAAGTGCACAATGGTATCCCGAAGCTGGGTCCCGCACTTGTGGCAGGTCCGGCCTGTCAGGTGTCGGTGAAGGGCAGTACGCTCAGTCACATCAAACACTCGTACATACTCTCTGTTAGGGATGCAGGAGGTGCAGACCT--------GGGACAGAGA---------------------------------GGGCACAGTG s rn3.chr10 110026404 327 + 110733352 CTCT-GGGGAGGCGGGCCAGTAAC----ACGCTCAATCCAC-AGTGCATCCATGGCACTGTCAGCAGCACATACCTTCAAGCTGGACCCTAAACACAGGATTGTGTCTGCTTTGCTAGCGGCCTCAGTCGCTGC-CTCCCAGTTCAGGGGCTGCCCTAGCGTCCCCCTCTCCCCAAAGTGCACAATGGTGTCCCGAAGCTGAGTCCCACACTTGTGGCACGTCCGGCCTGTCAGGTGTCGGTGAAGGGCGGTACGCTCCGTCACGTCAAACACTCGGACGTACTCTCTGTTAGGGATGCAGGAGGTGCAGACCT--------GAGGAAGAGA---------------------------------GGGCACAGTG s canFam1.chr18 30410433 324 + 66173745 C----TGGCAAGCAGGCTCCCTCCCCTTCTGTCCCGTCCACTCCCTCCTCCATGG---CGCTGTT--CACGTACCTTTAAGCTGGAACCTAAACATAGGATTGTGTCTGCTTTGCTGGCAGCTTGAGTGGCTGC-CTCCCAGTTCAGAGGCTGCCCCAGCGTCCCCCTCTCCCCAAAGTGCACAATAGTGTCCCGGAGCTGGCCCCCACACTTGTGGCAGGCCCGGCCTGTCTGGTGCCGGTGAAGGGCGGTGCGCTCAGTGACATCAAACACCCTCACGTACTCCCTGTTGGGTGTGCAGGCTGTACAGACCT--------GAGAAGGAGA---------------------------------GGGCGCTGTG s galGal2.chr3_random 673260 319 + 1636275 GTGT-CACCAAGAGGG-------------AATGCTGCTAAC---AATCTTCACCG---AGTC-TCTAAAGTTACCTTTAAGCTGGAACCCAGACAAAGAATCACATCTGCTTTGCTTGCAGCTTCTGTTGCTGC-TTCCCAGTTCAGGGGCTGTGTCAGTGTCCCCTTCTCCCCAAAGTGGACGATTGTATCTCTCAACTGCGCCCCACACTTGTGGCACATCCTGCCAGTGTGGTGCTTGTGCAGGGCTGTGCGTTCTGTCACGTCAAATACTCGCACATACTCTCTGTTGGGTGTACACGAAGTGCAGACCTATAGC-ACAGGAAGGAAA---------------------------------AAACGTAGTA s fr1.chrUn 148482862 322 + 349519338 -----TGGGAAGTG-------------------------AC-----------CAG---AATG--------AGACCTTTAGACTGGAGCCCAGGCAGAGGATAACATCTGCCATTCCAGCAGCCTCAGCAGCTCC-CTTCCAGTTGAGAGGTTTTTCCAGGGTCCCACGCTCCCCAAAGTGCACTATGGTGTCCCTGAGTTCGCCGCCACAGATGCTGCACGTGCGCCCTGTCCCGTGGCGGTGCAGTGACGTTCGCTCCGTCACGTCAAACAGCCGCACGTATTCTCTGATAGGAGCACAGGAGGTACACACCTGCCGCAACAGAGAGACGACTGTCGCTTTATTGTCCCCTTTGTTGCATGCGTGACCATAGTT s danRer1.chrUn 140258947 302 - 367113659 CTGTCCTGCATTTGGC-------------AACCCAAAACTC--------TAGTCA---TATCCTC-------ACCTTCAGACTGGAGCCTAAGCAGAGGATGAGGTCAGCCCGTTGTGCGGCCTCTGCTGCCCC-CTTCCAGTTGAGCGGCTGCTCCAAAGTGCCACGTTCTCCAAAATGCACGATGGTGTCTCTGAGCTCAGCTCGACAGTGAGGACACGAGCGGCCCGTCCCGTGCCGATGCAGAGCCGTGCGCTCAGTCACGTCAAACAGTCGGATAAACTCTCGTGGTGGAGAACAGGAATCGCAGACCT--------GTGAGACACA---------------------------------TGATACAGGG a score=-4764.0 s hg17.chr17_random 1971805 41 + 2618010 --AGTG--GGACCCGCCTGCCCATGGA-GACCCTGGGT--CCCTGCAG----------- s panTro1.chr19 81229416 41 + 82489036 --AGTG--GGACCCGCCTGCCCATGGA-GACCCCGGGT--CCCTGCAG----------- s mm5.chr11 120292034 41 + 121648857 --AGTG--AGATCTGCCTG-TCACCCA-GGCCCCGGGT-CCCCCTCGG----------- s rn3.chr10 110026731 40 + 110733352 --AGTG--ACATCTGCTTG-TCCCCCA-GGCCCTGAGT--CCTCTGGG----------- s canFam1.chr18 30410757 43 + 66173745 --GGCA--GGAGCCGCCGGCCTGCACC-GGCCCCCGAAACCCCAGAGG----------- s galGal2.chr3_random 673579 37 + 1636275 CTGTCG--GTATCTG---GTCCATCAG-AGCCCAGGGC-----TGCAG----------- s fr1.chrUn 148483184 56 + 349519338 --ATCGTTAAACACATTTGTTTATACATGATTTACTGT-CTCCAGCTGATATTTAGTGA a score=-2265.0 s hg17.chr17_random 1971846 2 + 2618010 -GA s panTro1.chr19 81229457 2 + 82489036 -GA s mm5.chr11 120292075 2 + 121648857 -TA s rn3.chr10 110026771 2 + 110733352 -CA s canFam1.chr18 30410800 2 + 66173745 -GG s fr1.chrUn 148483240 2 + 349519338 TG- a score=2100.0 s hg17.chr17_random 1971848 1 + 2618010 C s panTro1.chr19 81229459 1 + 82489036 C s mm5.chr11 120292077 1 + 121648857 C s rn3.chr10 110026773 1 + 110733352 C s canFam1.chr18 30410802 1 + 66173745 C s galGal2.chr3_random 674006 1 + 1636275 C s fr1.chrUn 148483242 1 + 349519338 C a score=193031.0 s hg17.chr17_random 1971849 112 + 2618010 TGCTCACTTCAATGTACATGTTCCCGTGGAGCTCGGAGATGGCCGTGCGCGGCAGCCCACTCCTCAGGTGGAGCCCGTCACAGTTCTGAGACACCACATGCTGCACCTG------GAA s panTro1.chr19 81229460 112 + 82489036 TGCTCACTTCAATGTACATGTTCCCGTGGAGCTCGGAGATGGCCGTGCGTGGCAGCCCACTCCTCAGGTGGAGCCCGTCACAGTTCTGAGACACCACATGCTGCACCTG------GAA s mm5.chr11 120292078 112 + 121648857 TGCTCACTTCAATATACATATTCCCATGGAGCTCTGAGATGGCGGTCCGGGGCAACCCACTCCGCAGGTGGAGCCCATCACAGTTCTGAGACACCACGTGTTGCACCTG------GAA s rn3.chr10 110026774 111 + 110733352 TGCTCACTTCAATATACATATTCCCATGGAGCTCAGAGATGGCGGTCCGTGGCAGCCC-CTGCGCAGGTGGAGCCCGTCGCAGTTCTGAGACACCACGTGTTGCACCTG------GAA s canFam1.chr18 30410803 112 + 66173745 TGCTCACCTCAATGTACATGTTCCCGTGGAGCTCCGAGATGGCCGTCCGAGGCAGCCCGCTCCGCAGGTGGAGCCCATCGCAGTTCTGAGACACCACATGCTGTACCTG------AAG s galGal2.chr3_random 674007 112 + 1636275 TGCTCACCTCTATGTACATGTTTCCATGAAGCTCAGAGATTGCTGATCGAGGTAACCCACTTCGCAGGTGCAGCCCATCACAGTTTTGAGATACCACATGCTGCACCTG------GAA s fr1.chrUn 148483243 118 + 349519338 TTCTTACCTCTATAAACATGTTTCCATGGAGCTCAGATAGAGCTTGTCTGGGTAGACCACTACGTAAATGGAGTCCATCGCAGTTTTGTGAAACAACATGCTTCACCTGTGTAGATAA s danRer1.chrUn 226852854 112 + 367113659 TGCAGACCTCAATGAACATGTTTCCGTGGAGTTCAGAGAGAGCGTGTTTGGGAAGACCACTGTGCAGATGAAGACCGTCACAGTTCTGTGAGACCACATGCTGAACCTG------CAA a score=0.0 s hg17.chr17_random 1971961 1 + 2618010 G a score=1314.0 s hg17.chr17_random 1971961 1 + 2618010 G s panTro1.chr19 81229572 1 + 82489036 G s mm5.chr11 120292190 1 + 121648857 G s rn3.chr10 110026885 1 + 110733352 A s canFam1.chr18 30410915 1 + 66173745 G s galGal2.chr3_random 674119 1 + 1636275 G s fr1.chrUn 148483361 1 + 349519338 G a score=-881.0 s hg17.chr17_random 1971962 17 + 2618010 GCAGA----ACG-GGTGGCAAG s panTro1.chr19 81229573 17 + 82489036 GCAGA----ACG-GGTGGCAAG s mm5.chr11 120292191 18 + 121648857 ACAGA----ACGTGGTGGCAGT s rn3.chr10 110026886 15 + 110733352 ACAGA----ACATGGTGGC--- s canFam1.chr18 30410916 22 + 66173745 GGAGATGGGGCAGGTCAGCAGG s fr1.chrUn 148483362 17 + 349519338 TTAGT----GTA-AGTAACAGA s danRer1.chrUn 226852966 17 + 367113659 ACACA----ACA-GAAGTCTAG a score=205.0 s hg17.chr17_random 1971979 1 + 2618010 G s panTro1.chr19 81229590 1 + 82489036 G s mm5.chr11 120292209 1 + 121648857 A s canFam1.chr18 30410938 1 + 66173745 G s fr1.chrUn 148483379 1 + 349519338 A a score=1799.0 s hg17.chr17_random 1971980 280 + 2618010 GGAGGGATGGCTGCCAGTG-----------------------------GTGGTGGG-------------------------------------------------GAGGTCAGTACCCGG--CCACAGCGAGGCTGTTCTGAGCCCCGCCGATGGCTCCCAAAACCAGGGGCA--GCTCCGTCCCCCCAGAGAGCCTTAGAAAGTAAAACA--CACAACAGGTCCAAC-CACCAGGAGTCAA------GAGGGCCTGTGGTGGGGAGNGGGC-------TGTCCTTCCT-----------------------CCAGCCCTGATGCACCTGGAGTGGCTGGGAGGGCAAGAGGTTGCACCGTCCCGGCAAGGTTGGGAAGTGGCTCGGGGT--------------TTGGCAAGGGC s panTro1.chr19 81229591 279 + 82489036 GGAGGGACGGCTGCCAGTG-----------------------------GTGGTGGG-------------------------------------------------GAGGTCAGTACCCGG--CCACAGCGAGGCTGTTCTGAGCCCCGCCGATGGCTCCCAAAACCAGGGGCA--GCTCCGACCCCCCAGAGAGCCTTAGAAAGTAAAACA--CACAACAGGTCCAAC-CACCAGGAGTCAA------GAGGGCCTGTGGTGGGGAG-GGGC-------TGTCCTTCCT-----------------------CCAGCCCTGATGCACCTGGAGTGGCTGGGAGGGCAAGAGGTTGCACCGTCCCGGCAAGGTTGGGAAGTGGCTCGGGGT--------------TTGGCAAGGGC s mm5.chr11 120292210 237 + 121648857 AGTAAGGTGGC-------------------------------------------AG-------------------------------------------------GAGG-AAGCACCCTG--CGGCAGTGGAGTTATTCTAAGCCCAG-------------AGACAAGGGACAAGGTTCC------------------------TAAAACA----------------------AGGAGGCAACTCAGGAAAGCCCTGAGGTAGAAAG-GCGC-----CATGTTCTTTCTCTT-----------------CTACTAACTCTAATGTACTGGGAGCAGCTAGGAGGGCAAGCATCTGTCCTGGTCCTGCAA-GCTGAGCAGCAGTTTGGGGCACTGGTCACATAGGGTGGGCAGGAC s rn3.chr10 110026901 223 + 110733352 ------------------------------------------------------AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGG----------------------------------------------TTCTCAAAACAAGGAG----GTGAC------------------------TGAAAC---------------------CCAGG------------AGGGCCCTGAGGTGGAAAG-GTGT-----CATGTTCTCCCT----------------------ACCAACTT--ATATACTGGGAGCAGCCAGGAGGGCAAGTATCTGTTCTGCTCCCGCAA-GCCTAGGAGCAGTTTGGGGCACTGGTCACAAGGGGAGGGCAGGAG s canFam1.chr18 30410939 311 + 66173745 GTCGGGgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgcgtgcgtgCTGGT-------------------------------------------------GCTG-TGGCGCTGCGTTCAGCCAGGACACCATCCGTAACCCTACCCAGAGCTCCC-AAACCAGGGGGG--ACTCCAGTCCTGCATGAAGCTTCAAAGG-CAAAACTGGAATGGCAGGCCGGTCTTAGCTCGACTCAG------GAGGGTCCTGGGTGGGAAA-GGCCCCAGGCACACCCCCCCCCCTCCGGCATCTCCCCCACCCCAACAGCTCTGAAGCACTTGGCG-AGCTAAGAGGGCAGATGCTTGCTCTCAGCTAGGAA-----------------GGGC------------------------- a score=0.0 s hg17.chr17_random 1972260 25 + 2618010 CACTCTGCCCCAGATCCATGCTCTC a score=2760.0 s hg17.chr17_random 1972260 25 + 2618010 CACTC-TGCCCCAGATCCATGCTCTC s panTro1.chr19 81229870 25 + 82489036 CACTC-TGCCCCAGATCCATGCTCTC s mm5.chr11 120292447 26 + 121648857 TACACACACCTTGGATCGATAACTTC a score=11461.0 s hg17.chr17_random 1972285 76 + 2618010 TTGGGT----CATGACATTTCAGGTCCCTG-----GGGACCTAGGCAGATCAACCACTACACCCCAT-TGGTTGAGGGTGTTCAGC s panTro1.chr19 81229895 76 + 82489036 TTGGGT----CATGACATTTCAGGTGCCTG-----GGGACCTAGGCAGATCAACCGCTACACCCCAT-TGGTTGAGGGTGTTCAGC s mm5.chr11 120292473 71 + 121648857 TTGGGTCATCCATCATCTTTCATGTCCCTTCCCCCAAATCCCAGGCATATCTGCTTCCCCGCT---------------TGCTCAGC s canFam1.chr18 30411250 74 + 66173745 TCAGCT----CATTACATTTCAGGTAGCTG-----AAGGACCAGAAGGATTGACCCTT---CCCCACATGGTTCAAAGTGCTCAGC a score=24913.0 s hg17.chr17_random 1972361 60 + 2618010 AGAAGGTCCCCAGAGATGTCCTATAAGCCTCCCCTGTGACTAGGATGGCTTCTGAGGTCC s panTro1.chr19 81229971 60 + 82489036 AGAAGGTCCCCAGAGATGTCCTATAAGCCTCCCCTGTGACTAGGATGGCTTCTGAGGTCC s mm5.chr11 120292544 57 + 121648857 GGA---TCTCTGGAAGTTTCTGTTGAGTCTCCTCTGAAGCTAGGCTGTCGTCTAAAGGCC s rn3.chr10 110027356 60 + 110733352 AGCAGGTCTCTGGAGGTTTCTGACAAGACTCCTCTGAAGCTAGGCTGCTGTCTAAAGACC s canFam1.chr18 30411324 59 + 66173745 AGAGGGTCTCCAGAGGTTGCCCACGAGCTTCCCCTGTATGTA-GATGCCTTCTGAGATCT a score=-190.0 s hg17.chr17_random 1972421 3 + 2618010 ACA s panTro1.chr19 81230031 3 + 82489036 ACA s mm5.chr11 120292601 3 + 121648857 CTG s canFam1.chr18 30411383 3 + 66173745 GTG a score=-824.0 s hg17.chr17_random 1972421 48 + 2618010 -ACAGAAAAATGCAAGGGAATCACAAAGGGGAAAGGCCACCAGCAGCTC s rn3.chr10 110027416 1 + 110733352 ------------------------------------------------C s canFam1.chr18 30411383 49 + 66173745 GTGGGGACAATGTGATAGAAACACAGGGGGAAAGAGCCACCAGCAGCTC a score=9312.0 s hg17.chr17_random 1972424 45 + 2618010 -GAAAAATGCAAGGGAATCACAAAGGGGAAAGGCCACCAGCAGCTC s panTro1.chr19 81230034 45 + 82489036 -GAAAAATGCAAGGGAATCACAAAGGGGAAAGGCCACCAGCAGCTC s canFam1.chr18 30411386 46 + 66173745 GGGACAATGTGATAGAAACACAGGGGGAAAGAGCCACCAGCAGCTC a score=14471.0 s hg17.chr17_random 1972469 195 + 2618010 TGAGGCTGAGGCTGGCTGCGGATGGGATGGTTCAGAGGGGGAGCTCCCCTTCTGTCCTGGAGAGTCAAGCACAGGAGGATCAAACCCGCGGCCTAACCCGCTTGGTGGGTGCTCATCATGGGAGTCAACTGGCAGACAGAGGGCGGGTGCAGTT-AGTTGCCCACTGGGCACCAAGGTGCTCTGCCTGGTCCC---NTG s panTro1.chr19 81230392 194 + 82489036 TGAGGCTGAGGCTGGCTGCGGATGGGATGGTTCAGGGGGGGAGCTCCCCTTCTGTCCTGGAGAGTCAAGCACAGGAGGATCAAACCCGGGGCCTAACCCGCTTGGTGGGGGCTCATCATGGGAGTCAACTGGCAGACAGAGGGAGGGTGCAGTT-AGTTGCCCACTGGGCACCAAGGTGCTCTGCCTGGTCCC----TG s rn3.chr10 110027417 157 + 110733352 TGAACGGGAAGCTGAATAC-----TAATGTCTGAGGGCAGGGGTTTCTCTTCT----TGAAGAG-AATGCAGAGCAGGGAGCAAACAGGAGTCTGAGCTACTGGAC---TATTTACCACAGGGATGACTAGG------------GGGTGGGATG-GCTTCCCACCTGGGCACTAAGGGTCTTT---------------- s canFam1.chr18 30411432 157 + 66173745 TGGGCCTGAGATCGGTCCCGTACAGGATGATTCATGAGAG--------------------AGATTCGAAC-CCGGAGTCTCAAACCCGC--------------GGTAGGCACTCATCTCAGCGTCCAA-GGGCTGACA------AGCTATGACGCAGTTGCTGCTCGGGCACAGAGGTGGCCCTCCAGGTCCTGTACTG a score=3040.0 s hg17.chr17_random 1972664 19 + 2618010 GCAAGTGTACCAGCCACCC s panTro1.chr19 81230586 19 + 82489036 GCAAGTGAACCAGCCACCC s rn3.chr10 110027574 10 + 110733352 ---------CCAGCTTTTT s canFam1.chr18 30411589 19 + 66173745 GGGACCCAGCTAGCCACCT s fr1.chrUn 148483380 19 + 349519338 GCAGGTCCAAGAGTCATCC a score=91.0 s hg17.chr17_random 1972683 1 + 2618010 A s fr1.chrUn 148483399 1 + 349519338 A a score=-69.0 s hg17.chr17_random 1972683 1 + 2618010 A s panTro1.chr19 81230605 1 + 82489036 A s rn3.chr10 110027730 1 + 110733352 A s canFam1.chr18 30411608 1 + 66173745 C a score=-2038.0 s hg17.chr17_random 1972684 3 + 2618010 ---GGG s panTro1.chr19 81230606 3 + 82489036 ---GGG s rn3.chr10 110027731 3 + 110733352 ---GCT s canFam1.chr18 30411609 3 + 66173745 ---GGG s galGal2.chr3_random 674583 3 + 1636275 ---GAG s fr1.chrUn 148483400 3 + 349519338 TCT--- a score=-1369.0 s hg17.chr17_random 1972687 2 + 2618010 ------CT s panTro1.chr19 81230609 2 + 82489036 ------CT s mm5.chr11 120293102 2 + 121648857 ------TT s rn3.chr10 110027734 2 + 110733352 ------TT s canFam1.chr18 30411612 2 + 66173745 ------TT s galGal2.chr3_random 674586 2 + 1636275 ------AT s fr1.chrUn 148483403 8 + 349519338 CCCTTCAA a score=112849.0 s hg17.chr17_random 1972689 120 + 2618010 CTTACCAGCTTCTGCTCATGCAGACGGGTGATGCTCATGTGGGTGAGGGNTTGGCTCGGCCTCGCTCAGGTCGGCAGCACTGCCAGGCAGAAAGGAAGGCAAGGTGAGGAGAGC-------------------------------TG----GAGC--- s panTro1.chr19 81230611 119 + 82489036 CTTACCAGCTTCTGCTCATGCAGACGGGTGATGCTCATGTGGGTGAGGG-TTGGCTCGGCCTCGCTCAGGTCGGCAGCACTGCCAGGCAGAAAGGAAGGCAAGGTGAGGAGAGC-------------------------------TG----GAGC--- s mm5.chr11 120293104 113 + 121648857 CTTACCAGCTTTTGCTCATGCAAACGGGTGATGCTCATGTGGGTGAGGG-TAGGCTCCGCTTCGCTTAGGTCGGCAGCACTGTACGGTTGGA--GAAAACA----GAGGTGAGA-------------------------------GG----GCGG--- s rn3.chr10 110027736 113 + 110733352 CTTACCAGCTTATGCTTGTGCAGCTGGGTGATGCTCATGTGGGTGAGGG-TAGGCTCTGCTTCGCTTAGGTCGGCAGCACTGTTGGATTTGA--GGGAACA----GAGGTGAAA-------------------------------GG----GCCG--- s canFam1.chr18 30411614 119 + 66173745 CTTACCAGCTTTTGCTCATGTAAGCGGGCGATGCTCATGTGGGTGAGGG-TCGGCTCAGCCTCACTCAGGTCAGCGGCACTGCCGGGTAGAAGGGAGCACA----GGGGTGGGA-------------------------------AGCTGTGAGG--- s galGal2.chr3_random 674588 150 + 1636275 CTTACCAGGTTATGCTTGTGTAAGCAAGCAATGCTCATATGGGTGAGCG-TGGGCTCTGCCTCACTCAGATCTGTAGTGCTGACAAGAGGCAAAAAAAAAAAAAAAAGGTAAGAAATTGCCATTAAAACTCTCAGCTGTCTGTTGGG----CAGC--- s fr1.chrUn 148483411 105 + 349519338 CATACCAGCTTTTCTTTGTGCAGCATTCTGATGCACATGTGCGTGAGCG-TGGGCTCGGCTTTACTCAGATCAGATGAACTGTTTGG-------GAAGAGA----AAGGAG----------------------------------AG----GATT--- s danRer1.chrUn 140261786 122 - 367113659 CTCACCATCTTCATTTTGTGCAGCATCCAGATGCTCATGTGTGTGAGGG-TCGGCTCAGCCTGACTCAGATCGGATGTACTGATGGTTACAAAAGCACACAGACAGATGTGAAC-------------------------------AT----GTGGCAC a score=-2843.0 s hg17.chr17_random 1972809 36 + 2618010 TCAGG--------CCCGTGCTGCCGCTGCCCAGCCTAT----GTG-GGA s panTro1.chr19 81230730 36 + 82489036 TCAGG--------CCTGTGCTGCCGCTGCCCAGCCTAT----GTG-GGA s mm5.chr11 120293217 32 + 121648857 CCAGA---------------TGACGCAGCTC-GCCTCTAATCGTG-GGA s rn3.chr10 110027849 36 + 110733352 CCAGG--------CAGATGCAGCTCTTCCCTAACCCTG----GTA-GAA s canFam1.chr18 30411733 36 + 66173745 TCAGG--------CCCACGCTGCCTTGGCTG-GACCGT----GTGCGAA s galGal2.chr3_random 674738 44 + 1636275 TCAAAATTCATCTCCTGAGTAGCTGCAGAACTGTCCTT----CCA-GGA s fr1.chrUn 148483516 31 + 349519338 TCAGC--------CGTGTTCAG-----GCTTCACCGGG----GTG-AAA a score=91.0 s hg17.chr17_random 1972844 1 + 2618010 A s danRer1.chrUn 140261945 1 - 367113659 A a score=-16738.0 s hg17.chr17_random 1972845 11 + 2618010 G---GCCATGC----------CTG- s panTro1.chr19 81230766 11 + 82489036 G---GCCGTGC----------CTG- s mm5.chr11 120293249 10 + 121648857 GAAAGCTG--------------TG- s rn3.chr10 110027885 7 + 110733352 A---GCTG--------------TA- s canFam1.chr18 30411769 21 + 66173745 G---GCTGTGTGAGGGCTGCGCTA- s fr1.chrUn 148483547 8 + 349519338 ----------------GTTCAATG- s danRer1.chrUn 140261946 11 - 367113659 --------------GGCCACAGCGT a score=124639.0 s hg17.chr17_random 1972856 118 + 2618010 ------GCCCGCTTACCTAACGCTTCTCCCTTTCTGAAGCAGTGTCCACACTCCATTAGGGCCCCGGTAGTCTGGGATAGACGCTGCCTGCA-----------TGTCGAG----------AAAAAAGGTAAGCCAAGTCAAAAGG s panTro1.chr19 81230777 118 + 82489036 ------GCCCGCTTACCTAACGCTTCTCCCTTTCTGAAGCAGTGTCCACACTCCATTAGGGCCCCGGTAGTCTGGGATAGACGCTGCCTGCA-----------TGTCGAG----------AAAAAAGGTAAGCCAAGTCAAAAGG s mm5.chr11 120293259 104 + 121648857 ------ACATGCTCACCTCACAGGCCTTCCTTTCTGAAGCAGTGTCCATACTCCATTAGGACCCCGATAATCTGGGATAGAAGCTGCCTGCA-----------CATTCGG----------ACAAAAAG--------------AGA s rn3.chr10 110027892 102 + 110733352 ------ACATGCTCACCTCACAGGCCTTCCTTTCTGGAGCAGTGTCCACACTCCATTAGGACCCCGGTAATCTGGGATAGAGGCTGCCTGCA-----------CATTTGG----------ACAAAG----------------AGA s canFam1.chr18 30411790 118 + 66173745 ------GGCCGCTTACCTGATGCTCCTCCCTTTCTGGAGCAGCGTCCACACTCCATTGGGGCCCCGGTAATCTGGGATGGAGGCTGCCTGCA-----------CGTCCAC----------AAAGAACATAAACCCGGTGACAATG s galGal2.chr3_random 674806 116 + 1636275 ------GTCACCTTACCTGATGCTCCTGCCCTTCTGCAGCAATGTCCAAATGCCATTGGGGCCTCGGTAGTCTGGGATCGAAGCTGCCTG-------------TGTTATT----------GAGAGAGACAAAGCACGGCCTGAGG s fr1.chrUn 148483558 136 + 349519338 ---------GCCTCACCAGACTCTTCGTCCCTTTTGTAACTGCGTCCACACGCCGTTAGGGCCCCTGTAGTCTGGGATGGAGGCGGCCTGAAGTAAAAAGCATCATCAGGCAAGCGCCAAAGAAAAAGTAAGGCAAGCGAGAAAG s danRer1.chrUn 140261957 121 - 367113659 AGCGGCGGATCCTCACCTCACAGACCGGCCCTTCTGCAGCTGAGTCCACACTCCATTGGGCCCTCGATAGTCTGGGATGGAGGCGGCCTGAA-----------AAACACA----------CAATAAAGCA---CAAACTTACAGA a score=-1060.0 s hg17.chr17_random 1972974 17 + 2618010 ------CACCACTGTAGGTACTG s panTro1.chr19 81230895 17 + 82489036 ------CACCACTGTAGGTACTG s mm5.chr11 120293363 13 + 121648857 ------TACCAC---AGGTACT- s rn3.chr10 110027994 13 + 110733352 ------TACCAC---AGGTACT- s canFam1.chr18 30411908 17 + 66173745 ------CATCACTGTAGGAACTG s fr1.chrUn 148483694 17 + 349519338 ------CAGAGCCGGATTTACCG s danRer1.chrUn 140262078 22 - 367113659 CTATGATGAAGCTGCGTATTCA- a score=1931.0 s hg17.chr17_random 1972991 30 + 2618010 GCAGAATTCCCAGAAACGGAAAGCCACTGT s panTro1.chr19 81230912 30 + 82489036 GCAGAATTCCCAGAAACGGAAAGCCATTGT s mm5.chr11 120293376 17 + 121648857 GCAGTATTCCC---CACAGA---------- s rn3.chr10 110028007 20 + 110733352 GCAGAACACCC---CACAGAGGG------- s canFam1.chr18 30411925 30 + 66173745 GCACAATTTGCAAGAGTGAAAAGCAAACGT s danRer1.chrUn 140262100 30 - 367113659 ACAGGACCAACACAGACATAGACCTGCTGT a score=28349.0 s hg17.chr17_random 1973021 136 + 2618010 CACTCCT---GCCGCATTCCGGGCTGGCCTGCATGTTGGCCTCTATTCATTCCACAGNGC----------------TGACCTGCCTGAG-CCCATATGGAGTGTACCCCAATTCGGCTCCTCCCTTCTACCTG---GACTTCCGTTTCCCGCCTGGCCT s panTro1.chr19 81230942 135 + 82489036 CACTCCT---GCCGCATTCCGGGCTGGCCTGCATGTTGGCCTCTATTCATTCCACAG-GC----------------TGACCTGCCTGAG-CCCATATGGAGTGTACCCCAATTCGGCTCCTCCCTTCTACCTG---GACTTCCGTTTCCCGCCTGGCCT s mm5.chr11 120293393 117 + 121648857 --------------------GGACATGCCTATAAATCAGTGTCTGTCCCATCCACT--GC----------------TGACCTGACT----CTCAAGTGGGATGCACCCCAGTATGGCTCTTTCCCTCCATCCAAGTGACTTTCTTGTCCTGCCTGGACC s rn3.chr10 110028027 94 + 110733352 -----------------------------------------------CATGCCACT--GC----------------TGGCCTGTCTGATCCCCAAATGGGTTGTACCCCACTATGGCTCTTTCCTTCCATCCAAGTGACTTTCTTGTCCTGTCTGGGCC s canFam1.chr18 30411955 141 + 66173745 TCCTCTTCACGTGGTGTTCCAGGCTTGTCCTCGCACTAGGCTCTATCCATTCTGGAG-GCTCAGCACTTCCTACCATAACCTGCCTGCA-CCCAGACAGAGG------------GGCTCCTTCCCTCTGCCCA---CACCTCTGC-TCCCACCTGGTCT a score=94676.0 s hg17.chr17_random 1973157 473 + 2618010 GGCTCATCCTTCCAGGCTGCACGCAG----CCCTGCCTGCCTCCGGAAGCCTCTCTGGCACCGAGCACAAAGCTGGGCTCTGT-GGCACATGTGTCCTCCACACTGCAGGGGAAGACTAGTCATGTTCCTAAAGT--GCCCCCAGG-GCCGAGCCCACAGCTCA---CAC-ATTTAGCAAATGGTGAATCCCTAGGTGGGTCCAGGCGA----CTGTC--CATTCTCATGTCC--CAGTGCTGACTATTCCCGCTCCACCTTAACAAAGGCAGAACAACTTCTTCAGATGAGATGAGCATC---TAACTTCCCAGGTTTTCAATCCTGTGAAACAAACTGAGGCCC----ACAGAGGGCACACAAGATATG-----CCAGGATCAAGGTGTCTTGTGTTC--------------------CCTTTTGGGGACTCCCG--------ACTCCTGCTTAAACTCAGAAAAATGCACCACCCCCCCNGGACAGTAGTTCCGACAGTCACATTCAAGACGGGNAACCNTCAANC---ACTC s panTro1.chr19 81231077 468 + 82489036 GGCTCATCCTTCCAGGCTGCACGCAG----CCCTGCCTGCCTCCGGAAGCCTCTCTGGCACCGAGCACAAAGCTGGGCTCTGT-GGCACATGTGTCCTCCACACTGCAGGGGAAGACTAGTCATGTTCCT-AAGT--GCCCCCAGG-GCCGAGCCCACAGCTCA---CAC-ATTTAGCAAATGGTGAATCCCTAGGTGGGTCCAGGTGA----CTGTC--CATTCTCATGTCC--CAGTGCTGACTATTCCCGCTCCACCTTAACAAAGGCAGAACAACTTCTCCAGATGAGATGAGCATC---TAACTTCCCAGGTTTTCAATCCTGTGAAACAAACTGAGGCCC----ACAGAGGGCACACAAGATATG-----CCAGGATCAAGGTGTCTTGTGTTC--------------------CCTTTTGGGGACTCCCG--------ACTCCTGCTTAAACTCAGAAAAATGCACCACCCCCC--GGGCAGTAGTTCCGACAGTCATATTCAAGACGGGAA--CCTCAAAC---ACTC s mm5.chr11 120293510 450 + 121648857 AGCTCACCCTTCCACATACCAAACAGAGAACCCTACTCTACTTCAAGATCCTTTCTAACAGTGAGCA---------GCTGTGT--CCACATCTGTCTTGAACACAGAAGGGGACAACTGGTCAGGCGCAT-CAGT--GTCTGAAGGAACAGATTTTAGAGCGCAGGTCAT-GCTTAGCAAATAG-----CCCCGGGAGG----AAGCGCT---CTGTCCACACACTTAAATCCTGCGGCTCTGA-GGTTTTTATTCCAACTTAACATAA-------AACCTCTACAGAC-AGATGAGTGTTAAGTCATTTTCCA------------CGAGAGACAAACAACCAACCAACAACAACAATAACAAAAAAGAAAACCATCTAGAAGCCAGGAGTCTTTGGATC--------------------CTGGCTGGGGAAGCCCTGTATAC--ATTGTTGCTTAAGAGCAGAGAAGTGC-CCGCCCT----GGCAGGTAATTCCAA----TACATCGA-----GGAA--CCTCAAACGGTGCTT s rn3.chr10 110028321 410 + 110733352 AGCTCACCCTTCGA-ATACCAAAGAA----CCCTACCCTACTTCAGGGTCCTTGCTAGCACTGAGCA---------GCTGTGT--CCACATCTGTCTTGAACACAGAAGGGGGAAACTGTTTAGGCTCAT-CAGT--GTCCGAAGGAACAGGTTTTAGAGTTCAGGTCACTATTTAGCAAATAGTGA--CCCCAGGAGA----GGGTCCT---CTGTC--CA--CTTATATCCTGCAGCTCTGA-GGTTTTCATTCCAACCTAACATAA-------AACC----------AGGTAAGCGTTAAGTAATTTCCCA------------CGACAAACAAAC---------------------AAACAAAACAAT-----CTAGGAGCCGGGAGTCTTTGGATC--------------------CTGGCTGGGAAAGCCCTGTATAC--ACTGCTGCTTAAGCTCAGAGAAGCGC-CTGCCCT----GGCAGGTAATTCCAA----CAGAGGGA-----AGGA--CCTCAAATGGTGCTT s canFam1.chr18 30412096 487 + 66173745 AGCTCATCCCTCCAGGTCTCAAGGA-----TCCTGCC-GACTCTGGGAACCTCTCCAGCACTGGGAA-TAGCCCAGGCTATGTAGCCACACCCGTCCTCTAAACCGAGGCAGAGGACTGGCCAGGCTCAT-CTGTGGGTCCCCAGGGCCCGG--CCAGTGCTCCGGGAAG-GTTTAGCAAATAGTGAAACCTCAGGTCA----GAGCACTCAACTGTCCTAATTCTTGTATCC--TGGTAGTGT---TTGCTGTCTTCCCTTCACAAAGATAGCC-AATCTCTCCACACAAGATAAGCACCACTGAACTTCTCTAGTTCTCGATCCAGCAAAACAAAA------CC----ATCATGAGAGAAGACAGTAGG-----CCAGGATCAAGGACTCCTGTGTTCCCCAGGCTGTGAGTGACCTGCCTTCTGGGGA-GCCCTGTCTCCCTCCTGCAGCTGAAGCTTGGAAAAATGC-CCATCCTGA--AGAGCGTGGTTCTGA--ATGACACTGAAGA--GAAA--CCTCAATCAGTA--- a score=5961.0 s hg17.chr17_random 1973630 35 + 2618010 CGATGAAATCCACTAGCTGCATGTGCT-TTTAGTTG s panTro1.chr19 81231545 35 + 82489036 CGATGAAATCCACTAGCTGCATGTGCT-TTTAGTTG s mm5.chr11 120293960 36 + 121648857 AGACCGCGTTTAAGAGCTGCAATTGGTCTTTAGTAG s rn3.chr10 110028731 36 + 110733352 AGGTCACATTTACGAGCTGCGAGCAGAACTTAGTTA a score=4411.0 s hg17.chr17_random 1973665 57 + 2618010 CCATTGGAAGTTCCNATANCAGGTCACGTGACTGTTACATAATTACATGACTGGACt s panTro1.chr19 81231580 56 + 82489036 ACATTGGAAGTTCC-ATAACAGGTCACGTGACTGTTACATAATTACATGACTGGACt s mm5.chr11 120293996 44 + 121648857 CCACCAGG-------TTTGCAGA----GTTACTGCTGTAGAGT--CATAACTGGATC a score=1911.0 s hg17.chr17_random 1973722 21 + 2618010 ttttttttttttttttttttt s panTro1.chr19 81231636 21 + 82489036 ttttttttttttttttttttt a score=27471.0 s hg17.chr17_random 1973743 296 + 2618010 gagagacggagtttagctctttcgcccaggctggaatgcagtggcatgatctcggctcactgcaacctccgccttccagtttcaagtgattctcctgcctcagcctctcgagtagctgggattgcaggtgcccgccaccatgcccgactaatttttgtatttttagtagagacagggtttcaccgtgttggccanggttgttcttgaactactgacctcatgatccgcccacctcggcctcccaaagtgctaggattataggcatgagccaccgcgcccagcATGACTGGACTTTT s panTro1.chr19 81232444 295 + 82489036 gagagacggagtttagctctttcacccaggctggagtgcagtggcatgatctcggctcactgcaacctccgccttccagtttcaagtgattctcctgcctcagcctctcgagtagctgggattgcaggtgcccgccaccatgcccgactaatttttgtatttttagtagagacagggtttcaccgtgttggcca-ggctgttcttgaactactgacctcatgatccgcccacctcggcctcccaaagtgctaggattataggcatgagccaccgcgcccagcATGACTGGACTTTT a score=42590.0 s hg17.chr17_random 1974039 303 + 2618010 ACATGTGACTTGTGGAGGGAGGAGACTAAACC-CCAGGGCTCC-GGGTATTTGAGTCA--GTAGTGAACTCCCTTTTTGCAttcttgctgctgagcctctgctgttctttgcttggagtgcctcattccaacctt---ctgt-aaatctcacccatccttcaaggcccaa--tcaaggccacctcccacaaaaagccaacgcaggtgggtttccc------aactccaagagcgcagagtgtg--------tgtctgagttt--gctctagcgacccagcacagccagctttacagtatggttatttgttcacatgcctgatccttgtc s panTro1.chr19 81232739 303 + 82489036 ACATGTGACTTGTGGAGGGAGGAGACTAAACC-CCAGGGCTCC-GGGTATTTGAGTCA--GTAGTGAACTCCCTTTTTGCAttcttgctgctgagcctctgctgttctttgcttggagtgcctcattccaacctt---ctgt-aaatctcacccatccttcaaggcccaa--tcaaggccacctcccacaaaaagccaacgcaggtgggtttccc------aactccaagagcgcagagtgtg--------tgtctgcgttt--gctctagcgacccagcacagccagctttacagtatggttatttgttcacatgcctgatccttgtc s canFam1.chr18 30412653 300 + 66173745 ACACGTCAC---TGGAGGCAGGAGACCCCACTACCAGGGCTCCAGGGTCTGCAAGTCAGGGTGCTCAGTGCTCCTTACACATTCTTGTT-----------------------TTGGAGGCTCTTACTCTCACCCTTGCCCGTAAAACCTTACTCAACCTTCAAGGCCTGGCTTCAATGCTGTATCGCACAGAAAGCCAAC-CAGATGGATTTTGCTGCTGAAGCCATGAGGGGGTGGGATGGGGAGGTGGCTGTCTGCGTTTCCACTCTAGCAACCTAGCACAACCAGCTTTGCCTTA--GCTGTCTGCTTACACGCCATATTCTCATC a score=11858.0 s hg17.chr17_random 1974342 111 + 2618010 acctaaaagcttcctgagaacagaaa----TCACCTGGGNTTCAGATCTGCTAGGCCGACGCGTGCCCAACACCCCACACACACCCATCAAATTAGATGGACGAGGTGCCAGCTA s panTro1.chr19 81233042 110 + 82489036 acctaaaagcttcctgagaacagaaa----TCACCTGGG-TTCAGATCTGCTAGGCCGACGCGTGCCCAACACCCCACACACACCCATCAGATTAGATGGACGAGGTGCCAGCTA s rn3.chr10 110029535 85 + 110733352 ACTTTAGGGCTTCTTCAGAATAGAAACTGTTCACCTGGG--TCAAACATT--------------------CATTCCACACTCACACAT--GATTGTACTGATA------CAGTCA s canFam1.chr18 30412953 95 + 66173745 GCCTGCGGGCATCTTGAGGCTGGAAA----TCCTCAGGC--TCCCCTGTGCTGGGCCTACAC-TGCGTCACACTCAACATGCACCCGC-----TAAGTAGACAATGA-------- a score=26208.0 s hg17.chr17_random 1974453 119 + 2618010 CACTTTCAAAGCTAGTGATNGTCCCACAGCCCAGGATANACTTGTNCAGTGAAACTTCTCAAAAC-------ACAATGCAATTCTCTCCTTCACCTGGTGTAT--TCTGGCTCTTACTGTGTCACTTT s panTro1.chr19 81233152 116 + 82489036 CACTTTCAAAGCTAGTGAT-GTCCCACAGCCCAGGATA-ACTTGT-CAGTGAAACTTCTCAAAAC-------ACAATGCAATTCTCTCCTTCACCTGGTGTAT--TCTGGCTCTTACTGTGTCACTTT s mm5.chr11 120294857 105 + 121648857 CAACTTCAAAGCTAGTCAT---CCCTCAGC----------CTTCC-CAG-GAGAGCTCTCAGAGTCAAGAGGACA--GCATTTCTCAAATGTACCTATTGTAC--CAGGACTCTGTCTG----GTTTT s rn3.chr10 110029620 107 + 110733352 CACGTTCAAAGGTAGTCAT---CCCTCAGCC---------------CAG-GAAATCTCTCAGAGTCAGGAGCACA--GCATTTCTCGTTTGTACCTGTTGTACTGTGTGACTCTGTCTTTCTTTCTTT s canFam1.chr18 30413048 116 + 66173745 CACTCTCAAAGCTACCCAT-GTTCTGTGGCCCGAGACA-GCTTCC-CAATAAAACCTGCCCAAAC-------CCCACGCATTTCTCTCCTTCCCCTGGTGTAC--TCTCGTTCGTCCTGCCTTGCTTC a score=3439.0 s hg17.chr17_random 1974572 10 + 2618010 CTACTTATCT s panTro1.chr19 81233268 10 + 82489036 CTACTTATCT s mm5.chr11 120295104 10 + 121648857 CCATTTATCT s rn3.chr10 110029727 10 + 110733352 CTTTCTTTCT s canFam1.chr18 30413164 10 + 66173745 CTAGTGACTT a score=3714.0 s hg17.chr17_random 1974582 78 + 2618010 TCCNCTCGACATGGACAGAACA---NGAGTGGAAAATCA------CAACTTTGGGCTTAGCTCTGTCCACATAACCT----------------------------------GGGGGTGCCT s panTro1.chr19 81233278 79 + 82489036 TCC-CTCGACATGGACAGAACA----GAGTGGAAAATCAGGA---CAACTTTGGGCTTAGCTCTGTCCACATAACCT----------------------------------GGGGGTGCCT s mm5.chr11 120295114 100 + 121648857 TTC-TTCAAGGAGTACAGGCTC----AGGAGAAAGACTA-------------GGGCTCCAGTTTGTCCACATCACGTAAATCGATCAAT---TTGTCTGCACTTTAAGGGAGAAGGCATTA s canFam1.chr18 30413174 116 + 66173745 -----TCAACACGTAGAAAATCCGGTGAATGGGGAACCTGGAGACAAGTTCTGGGCTTAACTCTGCCCACCTAACCTTGGGCTAGTGATGAACCACCTTGACTTTAAGTGAGGAGCTGCCC a score=13020.0 s hg17.chr17_random 1974660 94 + 2618010 GCGAGCAGTCGGCTACTACACCCCATTCGTATCTCTACTCCTTGTTTT------TTTTAACTGGCTGTAACACAGAGGCCAAGC---------------------GT-TTAAAAAGCGTTTA s panTro1.chr19 81233357 94 + 82489036 GCGAGCAGTCGGCTACTACACCCCATTCGTATCTCTACTCCTTGTTTT------TTTTAACTGGCTGTAACACAGAGGCCAAGC---------------------GT-TTAAAAAGCGTTTA s mm5.chr11 120295214 100 + 121648857 GCAGGCAGTTGGCTACTATGCCCTACTA------CTGTTCCATG-----------TTTGATTGGCAGT----CAGAAACTACGCATTCTGTAACTCTTTGACTTAGC-TTAATTATTATTTA s rn3.chr10 110029922 79 + 110733352 GCAAGTATTTGGTTACTACATCCTACTA------CCGCTCCGTG-----------TTTGACTGGCTTT----CATAAATTAAGC---------------------AT-TCTGAAACTCTTTG s canFam1.chr18 30413290 92 + 66173745 GCAGGCACTGAGGTTTCAGTCCCTCTTA------CGCCTCCTTCCTTTCTTGTGTCTAAACAGGCATC---GCAAAAACTGCAT---------------------ACGTTGATAAATGCTTA a score=5231.0 s hg17.chr17_random 1974754 10 + 2618010 CCTTAGGTAA s panTro1.chr19 81233451 10 + 82489036 CCTTAGGTAA s mm5.chr11 120295452 10 + 121648857 CCTTAGTTAA s rn3.chr10 110030001 10 + 110733352 ACTTAGCTAA s canFam1.chr18 30413385 10 + 66173745 CCCCAGTGAA a score=-1159.0 s hg17.chr17_random 1974764 14 + 2618010 GTTTT-------------------GGTCATTTC s panTro1.chr19 81233461 14 + 82489036 GTTTT-------------------GGTCATTTC s mm5.chr11 120295462 22 + 121648857 GTCTTAAA-----------TCTAGAATTGCTTC s rn3.chr10 110030150 33 + 110733352 GCCTTAGTTAAATCTTAAATCTAGAATTGTTTT s canFam1.chr18 30413395 20 + 66173745 -------------GTTTGAAGTGGAATCATTTC a score=5086.0 s hg17.chr17_random 1974778 24 + 2618010 GTT-----TCTNTTAAGAGAAAAAACCTT s panTro1.chr19 81233475 23 + 82489036 GTT-----TCT-TTAAGAGAAAAAACCTT s mm5.chr11 120295484 23 + 121648857 GGG-----TCT-CTGAGAAAGGACACCTT s rn3.chr10 110030183 28 + 110733352 GTTCCGGATCT-CCGAGAAAGGACACCTT a score=9174.0 s hg17.chr17_random 1974802 20 + 2618010 AGAGCTGCTT----TAAAGGCGAG s panTro1.chr19 81233498 20 + 82489036 AGAGCTGCTT----TAAACGCGAG s mm5.chr11 120295507 20 + 121648857 GAAGTTACTT----CAAAGGTGAG s rn3.chr10 110030211 20 + 110733352 GAAGTTATTT----CAAAGGTGAG s canFam1.chr18 30413730 24 + 66173745 AGAGCTGCTCTGCGCGAAGGTGCG a score=413.0 s hg17.chr17_random 1974822 36 + 2618010 TTTTTCGCGATT----ACTNGGAGCTCA--------TACTCCGTCCTN s panTro1.chr19 81233518 35 + 82489036 TTTTTCGCGATT----ACT-GGAGCTCA--------TACTCCGTCCTG s mm5.chr11 120295527 28 + 121648857 -----CGAGATT------T-TGAACTCC--------AGCACTGTACAG s canFam1.chr18 30413754 47 + 66173745 TTTCCTGCGGGTCAGGGCC-GGCGCGCAGAGGGCTCTGCCGGGTCCTG a score=4334.0 s hg17.chr17_random 1974858 21 + 2618010 GGGTACGCCTC-----------CGCCTCCCTC s panTro1.chr19 81233553 21 + 82489036 GGGTACGCCTC-----------CGCCTCCCTC s mm5.chr11 120295558 32 + 121648857 GAGTTTGCATCCCAGAAGGGGGCGCCTCACAC s rn3.chr10 110030281 13 + 110733352 GGG-------------------CGCCCCACAC s canFam1.chr18 30413801 32 + 66173745 GGGCCCGTCACCCGGCAgggggcgccccgccc a score=-17597.0 s hg17.chr17_random 1974879 2 + 2618010 CC--------------------------------------------------- s panTro1.chr19 81233574 2 + 82489036 CC--------------------------------------------------- s mm5.chr11 120295590 25 + 121648857 CC-------------------GAA---------GCAACGCGCAGGCCCTCACT s rn3.chr10 110030294 25 + 110733352 CT-------------------GAAGCAATGTGCA---------GGCCGTCACT s canFam1.chr18 30413833 34 + 66173745 cgcgcgggcggccggACCCTGGAA-------------------AGGGCCGCCT s galGal2.chr3_random 675921 2 + 1636275 ---------------------------------------------------CC a score=10817.0 s hg17.chr17_random 1974881 7 + 2618010 TACCGTG s panTro1.chr19 81233576 7 + 82489036 TACCGTG s mm5.chr11 120295615 7 + 121648857 CACTGTG s rn3.chr10 110030319 7 + 110733352 TACCGTG s canFam1.chr18 30413867 7 + 66173745 CACCGTG s galGal2.chr3_random 675923 7 + 1636275 TACCGTA s danRer1.chrUn 140262565 7 - 367113659 TACCGTA a score=159599.0 s hg17.chr17_random 1974888 103 + 2618010 CTGATTCCCGCGCCTGTGTAGACGACCAAGTATTTGGCGTTCCGGACGGCGCTGGCCAGCTCCCGGACCTTCCCCCGCAGCTCCTCCGGGTCGTCGCACACCT s panTro1.chr19 81233583 103 + 82489036 CTGATTCCCGCGCCTGTGTAGACGACCAAGTATTTGGCGTTCCGGACGGCGCTGGCCAGCTCCTGGACCTTCCCCCGCAGCTCCTCCGGGTCGTCGCACACCT s mm5.chr11 120295622 103 + 121648857 CTGATTCCAGCGCCCGTGTAGACAACCAAGTGCCTGGCACTTCGGACAGCTCCGGCCAGTTCGCGGACCTTCCTCCGCAGCTCCTCCGGGTCATCACACACCT s rn3.chr10 110030326 103 + 110733352 CTGATCCCAGCGCCTGTGTAGACAACCAAGTGTCTGGCACTTCGGACAGCTCCGGCTAGTTCGCGGACCTTCCTCCGCAACTCCTCTGGGTCATCACACACCT s canFam1.chr18 30413874 103 + 66173745 CTGATCCCCGCGCCGGTGTAGACCACCAGGTACTTGGCGTTGCGCACGGCGCCGGCCAGCTCGCGGACCTTCCTGCGCAGCTCCTCCGGGTCGTCGCACACCT s galGal2.chr3_random 675930 103 + 1636275 CTGATCCCTGCTCCTGTGTAGATGACAAGGTGCTTGGCATTCCGGATAGCAGCAGCCAGCTCAATGACCTTTCTCTTCAGCTCCTCTGGCTCATCACATACCT s fr1.chrUn 148483713 103 + 349519338 CTGATACCCGCTCCAGTGTAAACCACCAGATGACTGGCCTGTTTGACCGCCACGGCCAGTTCCCTCACTTTACTTTTCAATTCCTCAGCATCGTCAAACACCT s danRer1.chrUn 140262572 103 - 367113659 CTGATTCCTGCTCCGGTGTAAATGACCAGATGTTTGGCCCGCTGGACTGCCTCTGCCAGCTGCTTCACTTTAGTCTTCAAGTTCTCAGCATCATCAAACATCT a score=2655.0 s hg17.chr17_random 1974991 9 + 2618010 GCCAAGACG s panTro1.chr19 81233686 9 + 82489036 GCCAAGACG s mm5.chr11 120295725 8 + 121648857 GATAGGA-G s rn3.chr10 110030429 8 + 110733352 GACAGGA-G s canFam1.chr18 30413977 9 + 66173745 GCCGAGACG s fr1.chrUn 148483816 9 + 349519338 GCAAAGATG s danRer1.chrUn 140262675 9 - 367113659 GCAAACATC a score=6515.0 s hg17.chr17_random 1975000 12 + 2618010 CC-AG-GGTGGTCA s panTro1.chr19 81233695 12 + 82489036 CC-AG-GGTGGTCA s mm5.chr11 120295733 12 + 121648857 CC-AG-GCTGGTTA s rn3.chr10 110030437 13 + 110733352 CC-AGAGCTGGTTA s canFam1.chr18 30413986 13 + 66173745 CCGAG-GCCGGTCG s danRer1.chrUn 140262684 12 - 367113659 CC-AA-AATGATTA a score=8295.0 s hg17.chr17_random 1975012 86 + 2618010 CC---GCCCCGGGCCGCCCCACCCGGG--ACCGCCCGTCGCCC-----CAGCTGCTCCCGAAAccgggggcgcccgcgcgccgcACGCGGAACTCG s panTro1.chr19 81233707 86 + 82489036 CC---GCCCCGGGCCGCCCCACCCGGG--ACCGCCCGTCGCCC-----CAGCTGCTCCCGAAAccgggggcgcccgcgcgccgcgcgcggAACTCG s mm5.chr11 120295745 55 + 121648857 TT---GCCGCCGCTCGCCTCCC-------GCAGCCCGCCGCCC-------------------------AGCACCCGCTGCCCGCG------ACTCG s rn3.chr10 110030450 79 + 110733352 TTCCGGCCGCAGCCCACCGCCTACAGGCTACAGGCTATAGCCTACAGCCAACAGCCC-----------AGCACCCGCTGCCCGCG------ACTCG s canFam1.chr18 30413999 55 + 66173745 TA--Agccccgccccgccccgc-------cccgccc--cgccG-------------------------GCCCCGGGCGCGCCGCG-----GACTCG a score=122691.0 s hg17.chr17_random 1975098 142 + 2618010 CCTCCTCCTGCCGCCGCTTCAG---------GCCCTCGCGCCGCCGGCTCCGGCCCTGCAGCTCCGTTACCAGGTCCGCGCTCTCGGCCAGCAGCCGGCCCTCCTCGGCGCTGCGCTCCGCCGCCGCCTTCCTCAGGATGCGCGACACCTG s panTro1.chr19 81233793 142 + 82489036 CCTCCTCCTGCCGCCGCTTCAG---------GCCCTCGCGCCGCCGGCTCCGGCCCTGCAGCTCCGTTACCAGGTCCGCGCTCTCGGCCAGCAGCCGGCCCTCCTCGGCGCTGCGCTCCGCCGCCGCCTTCCTCAGGATGCGCGACACCTG s mm5.chr11 120295800 142 + 121648857 CCTCCTCCTGGCGGCGCTTGAG---------GCCCTCACGCCGCCGACTTCGACCCTGCAGCTCGGTCACCAGATCCTCGCTCTCGGCCAAGAGCCGGCCCTCCTCCGCGCTGCGCTCTGCAGCCGCCTTCCTCAGGATGCGTGACACCTA s rn3.chr10 110030529 142 + 110733352 CCTCCTCCTGGCGGCGCTTGAG---------GCCCTCACGCCGCCGGCTCCGACCCTGAAGCTCGGTCACCAGATCCTCACTCTCAGCTAGAAGCCGGCCCTCCTCCGCGCTGCGCTCTGCAGCCGCCTTCCTCAGGATGCGTGACACCTA s canFam1.chr18 30414054 142 + 66173745 CCTCCTCCTGCCGCCGCTTCAG---------GCCCTCGCGCCGCCTGCTCCGGCCCTGCAGCTCGGTCACCAGGTCCTCGCTCTCCGCCAGGAGCCGGCCCTCCTCGGCGCTGCGCTCGGCCACCGCCTTCCTCAGGATGCGCGACACCTG s danRer1.chrUn 140264309 142 - 367113659 CCTCCTCTTGTTTCCTCTTGAGCAGGTGTCTGCGGTTCTGTCGTCGGCTCAGCTCCTGCA---CGGTGTCCTGATGTGC---CTGCAGCATCGACCGCTCCTCCTCTG---TCCACTCAGACTCACACTTCTGGAGGATCTTCGAGATCTG a score=5219.0 s hg17.chr17_random 1975240 14 + 2618010 CGGGC---AGGCGGACG s panTro1.chr19 81233935 14 + 82489036 CGGGC---AGGCGGACG s mm5.chr11 120295942 14 + 121648857 CGGAC---GAGCAGCGG s rn3.chr10 110030671 14 + 110733352 CGGAC---GAGCAGTAG s canFam1.chr18 30414196 17 + 66173745 CGggcgcggggcgggcg s danRer1.chrFinished 7409210 17 - 40167097 CCGGCACCACCCAGACG a score=0.0 s hg17.chr17_random 1975254 53 + 2618010 GTGAgcggcggcgcgggccgggcatggccgggccggggagcggcggcggcgTA a score=21211.0 s hg17.chr17_random 1975254 51 + 2618010 GTGAgcggcggcgcgggccgggcatggccgggccgggga--gcggcggcggcg s panTro1.chr19 81233949 51 + 82489036 GTGAgcggcggcgcgggccgggcatggccgggccgggga--gcggcggcggcg s mm5.chr11 120295956 46 + 121648857 GTGAGCGACCGCGCGCGCCG-----GCGCGAGCGCGGGC--ACGGCAGTGGCT s rn3.chr10 110030685 46 + 110733352 GTGAGCGACTGCGCGTGCCG-----GCGCGAGCGCGGGC--ATGGCAGTGGCT s canFam1.chr18 30414213 50 + 66173745 gtgag-ggcggcgcgggccgggg--gcgcggcgcggggcgggcggcggcggcg a score=2120.0 s hg17.chr17_random 1975305 2 + 2618010 TA s panTro1.chr19 81234000 2 + 82489036 TA s mm5.chr11 120296002 2 + 121648857 CA s rn3.chr10 110030731 2 + 110733352 TA s canFam1.chr18 30414263 2 + 66173745 TA s galGal2.chr3_random 676808 2 + 1636275 TA a score=114973.0 s hg17.chr17_random 1975307 156 + 2618010 CCTGGCGGAGGCGCTCCCTCTGCTGCTCCTCCCGCAACCTCCGGACCCGCTCCGCCGCTTTGCGCTCGGAGCGGC--TCAGA---CCCCCGG--CTGCCATCGCTCCCCTGGAGACCTGC-------TCTTCCGCT-----TCCGCCTC---ACACGGCAGGCCGCGCT---------CAGGGCGCA s panTro1.chr19 81234002 156 + 82489036 CCTGGCGGAGGCGCTCCCTCTGCTGCTCCTCCCGCAACCTCCGGACCCGCTCCGCCGCTTTGCGCTCGGACCGGC--TCAGA---CCCCCGG--CTGCCATCGCTCCCCTGGAGACCTGC-------TCTTCCGCT-----TCCGCCTC---ACACGGCAGGCCGCGCT---------CAGGGCGCA s mm5.chr11 120296004 158 + 121648857 CCTGGCGGAGGCGCTCCCGCTGCTGCTCCTCCCGCAGCCTCCGGACCCGCTCAGCAGCTTTGCGCTCCGAGCGGC--TCAGACCGCCACCGG--CTGCCATCGCTCCTTTGA----CTGCGCTTCCGGCTTCCGCT-----TCCGCCTC---ATCCGGCA----GCTAC---------AGAGACGCA s rn3.chr10 110030733 158 + 110733352 CCTGACGGAGGCGCTCCCGCTGCTGCTCCTCCCGCAACCTCCGGACCCGCTCAGCCGCTTTGCGCTCCGAGCGGC--TCAGACCGCCACCGG--CTGCCATCGCTCCCTGGA----CTGCGCTTCCGGCTTCCGCT-----TCCGCCTC---ATCCGGCA----GCTAC---------AAAGACGCA s canFam1.chr18 30414265 151 + 66173745 CCTGGCGGAGGCGCTCCCGCTGCTGCTCCTCCCGCAGCCTCCGGACCCGCTCCGCCGCCTTGCGCTCCGAGCGGC--TGGGA---CCCCCGG--CTGCCATCGCTCCCGGGA-GGCCCGC-------GCTTCCGCT-----TCCGCCTC-----CCGGCAGGCCGCG-----------CACCGCGCA s galGal2.chr3_random 676810 165 + 1636275 CCTGTCTCCGCCGGTCCCGCTGCTCCTCCTGCTGAAGGATCTCGGCGCGCGCCGCCGCCTTCCGCTCCGAGCGGC--TGAGGCTGCCGCCGG--CCGCCATCG--CCCCGGAAGCGCCCC-------ACTTCCGCT----ATCGGACTC-----CTGACGTGCAGCGCCGCTTCCTCTCGGAGAGCG s danRer1.chrFinished 7409227 165 - 40167097 TCTTGCCCTGCCGGCCCCAACCCGGCTCCTCGCCCTG---CCGGTCCCAGCCCGGCTCCTGGCATTACCAACGCCATCCAGA---CGTCTTGCCCTGCCGGCACCTCCCAGACGTCTTGC-------CTTGCCGGTCCCAGTCCGGCTCCATGCCCTGCCGGCTCCAGT---------CCAGCTGCC a score=-2481.0 s hg17.chr17_random 1975463 12 + 2618010 TGCGCAAGATNG s panTro1.chr19 81234158 11 + 82489036 TGCGCAGGA-GG s mm5.chr11 120296162 8 + 121648857 TGCGCGGG---- s rn3.chr10 110030891 8 + 110733352 TGCGCGCG---- s canFam1.chr18 30414416 6 + 66173745 TGCGCG------ s galGal2.chr3_random 676975 8 + 1636275 GCCGAGCG---- a score=-8489.0 s hg17.chr17_random 1975475 49 + 2618010 GGCCCCGCC----CCCACCCA-CCCCTTCCGGCTC----------CGCCC-------------GCCGCGT----CG---------------------------------CCCCA- s panTro1.chr19 81234169 49 + 82489036 GGCCCCGCC----CCCACCCA-CCCCTTTCGGCTC----------CGCCC-------------GCCGCGT----CG---------------------------------CCCCA- s mm5.chr11 120296170 59 + 121648857 ---CCCGGC----CCTTTCCA-CCTCTTCCGGCTCGCCCTTCCCACCCTT-------------GCTCCTT----CGGG------------------------------ATTTCA- s rn3.chr10 110030899 69 + 110733352 ---CCCTGC----CTTTCCCA-CCCCTTCCGGCTCGCCCTTCC--TATCCTGGTCTTTCCCTTGCTCCTT----CACG-------------------------------TTTCA- s canFam1.chr18 30414422 42 + 66173745 ---CCAGGC-------GCCCC-GCCCTTCCGGCCC----------CGCCC-------------ACGCCG-----CG---------------------------------CGCAA- s galGal2.chr3_random 676983 69 + 1636275 ----------------------CCGCTTCCGGCCC----------CTCCC-------------ACCCCGCACTGCGGAgcggcgccccctcgcgcagcggcggcccgcgccgcA- s danRer1.chrFinished 7410175 52 - 40167097 AGTCCCGCCGGCTCCTGCCCAGCTGCCTCCAGTTC----------CGCCT-------------GCTC-------CA---------------------------------GTCCAG a score=18032.0 s hg17.chr17_random 1975524 27 + 2618010 AAGAAGCACCTGCCAGT-CTCTTTAAAA s panTro1.chr19 81234218 27 + 82489036 AAGAAGCACCTGCCAGT-CTCTTTAAAA s mm5.chr11 120296229 27 + 121648857 AAGAAATACCACCAGAT-CTCTTTAAAA s rn3.chr10 110030968 27 + 110733352 AAGAAACACCACCAGAT-CTCTTTAAAA s canFam1.chr18 30414464 27 + 66173745 AGGAGGCACCTGACGGT-CTCTTTAAAA s galGal2.chr3_random 677052 28 + 1636275 AGGAAGCGCCAGGCCGTGGTGTTTGAAA s fr1.chrUn 148493309 25 + 349519338 --AAAACACGACTGTGT-TCCATTTCAA s danRer1.chrFinished 7410227 27 - 40167097 TTGCCTCTCCAGCCGGC-TCTCCTAAAA a score=88839.0 s hg17.chr17_random 1975551 71 + 2618010 G--GTTTATTGATCATATACAA--AATAAAGAAAACCTTATATATCACAAACATACACTATGTACAGCAATAAAT s panTro1.chr19 81234245 72 + 82489036 G--GTTTATTGATCATATACAAATAAT-AAGAAAACCTTATATATCACAAACATACACTATGTACAGCAATAAAT s mm5.chr11 120296256 73 + 121648857 GGCGTTTATTGATCATATACAA--AATAAAGAAAACCTTATATATCACAAACATACACTATGTACAGCAATAAAT s rn3.chr10 110030995 73 + 110733352 GGCGTTTATTGATCATATACAA--AATAAAGAAAACCTTATATATCACAAACATACACTATGTACAGCAATAAAT s canFam1.chr18 30414491 73 + 66173745 GGTGTTTATTGGTCATATACAA--AATAAAGAAAACCTTATATATCACAAACATACACTATGTACAGCAATAAAT s galGal2.chr3_random 677080 69 + 1636275 GCTGTTTATTG-TCATGTACAA--AACAACGGCGGCCGCGC---CGGCAGACGAACACTATGTACAGCAATAAAT s fr1.chrUn 148493334 72 + 349519338 AACATTTATTGGTCATATACAA--ATTAAAGTAAGCTGTTTCT-CAACAAACATACAGTATATACATCAATAAAT a score=3295.0 s hg17.chr17_random 1975622 3 + 2618010 ACC s panTro1.chr19 81234317 3 + 82489036 ACC s mm5.chr11 120296329 3 + 121648857 ACC s rn3.chr10 110031068 3 + 110733352 ACC s canFam1.chr18 30414564 3 + 66173745 ACC s galGal2.chr3_random 677149 3 + 1636275 AAC a score=0.0 s hg17.chr17_random 1975625 11 + 2618010 CGGGGGGCCAG a score=1000.0 s hg17.chr17_random 1975625 1 + 2618010 C s panTro1.chr19 81234320 1 + 82489036 C s mm5.chr11 120296332 1 + 121648857 C s rn3.chr10 110031071 1 + 110733352 C s canFam1.chr18 30414567 1 + 66173745 C a score=7526.0 s hg17.chr17_random 1975626 10 + 2618010 GGGGGGCCAG s panTro1.chr10 44114224 10 + 135301796 GGGGGGCCAG s mm5.chr11 120296333 10 + 121648857 GGGGGGCCAG s rn3.chr10 110031072 10 + 110733352 GGGGGGCCAG s canFam1.chr18 30414568 8 + 66173745 --GGGGTCCG a score=27654.0 s hg17.chr17_random 1975636 29 + 2618010 GCCCAGTGCTG-CCCCTCCTGGACAATAAT s panTro1.chr10 44114234 29 + 135301796 GCCCAGTGCTG-CCCCTCCTGGACAACAAT s mm5.chr11 120296343 29 + 121648857 GCCCAGTGCCG-CCCCTCCTGGACAATAAT s rn3.chr10 110031082 29 + 110733352 GCCCAGTGCCG-CCCCTCCTGGACAATAAT s canFam1.chr18 30414576 30 + 66173745 GCCCAGTGCCGCCCCCCCCTGGACAATAAT s galGal2.chr3_random 677152 28 + 1636275 GCCCGCCGTCG-CCGCGCA-GGGCAATAAC a score=4140.0 s hg17.chr17_random 1975665 75 + 2618010 TTAGCAATAAATACTGCGCAGGGCAGGGGTAGGGCACCAAGGCCACTGCC--CTG---------------------------------CAAG---AG-----------------------------------GTCAGGCCCCTGCCCG s mm5.chr11 120296372 115 + 121648857 TTAGCAATAAATACTGCGCAGGGCACGGGT-GGGCACCAAGGCTGCTGCCTGCTGAG-----------------------------GCCAGG---AGACTGATTGCTCTCCAAGTCCAGGCCTCACCTTGCAGCCAGATCCCCTATGG s rn3.chr10 110031111 125 + 110733352 TTAGCAATAAATACTGCGCAGGGCACGGGT-GGGCACCAAGGCTGCTGCCTGCTGAGGCCAGGTGACTTGATCGCTCTGCACTGATGCCAAGTCCAGACC----------------------TCACCTTGCAGCCAGATCCCCGATGG s canFam1.chr18 30414606 51 + 66173745 TTAGCAATAAATACTGCACAGGGCAGGCG--GGGCGCTGC-GCCGCGGCC--------------------------------------CAGG-------------------------------------------------------- s galGal2.chr3_random 677180 78 + 1636275 TTAGCAATAAATACCGCCAACCGCGGCCC--GGCTGCCCTCCCCCCCCCC--------------------------------------CCAC------------------------------CCACCCAGCGGACAGGCCCGGGGCCG a score=77514.0 s hg17.chr17_random 1975740 511 + 2618010 CCCTACACGAAGTGTGAGCGCTCGGGCCTCACCCCGCATCCAAACCCCAGCCCCTCCTCACTTAGATCTTTAATAACCTCCATCCCACCCCAGCAGATCCCGGGGTCTTCTCCCACACACACAACCT--CCCCTGGCTAGACCTAGGCAGGGCAGGCAGGGACTGATCAACTCTGCTTGGACCCA-CCTCTCAGCGCCAGGAGAGCAACAGGGCTGGACACGCG----GGCAGCCCTTGTCCT----------GTTGCCAGGAGAAGGCTTTCTGTGCCCACTCCCNGTTTGGTTAAAGGCTTCAGGGACTAGCAGATTG-AGGGGGTGGGAAGAAGGGCAGGGCTGGGACACAAGGTTGCTGGAGGGGCCAAAGCCCNAACTGGGGTCACCAAGAACAGGGAGGTCTCACAGTTTATCGGGGAC----------ACACTCTAGCTCAGAC--TCAAGGGACACCCATG--GTATCAAAGCTGCTGCTCCAGGGGCAGGGTGGAAATGTGTGGGACTGGCCCAGCAGGTATGGTACACACCCA s mm5.chr11 120296487 507 + 121648857 CCCTACCC-AGGTGCAGGAGACAGGGTCTCACCTTGCAGCCACACCACAGCCCCTCCTCACTTGGATGTTGAAGGACCCTCACCCCA-----------TTTAGGGTACTCT-CTAC-----TAACCTTCCCCCTGGCTTCAGCCCTGCAGGGCAGGCAGGGGCTGATCAACTCTGCTTGGACACA-CCTCTCAGCACCAGGAGACCAACAGAGCTGGACACAC-----AATAGCCCTTGTCCTGTTGCCCTAAGTTGCCAGGAGAAGGCTTTCTGTACCCATTCCC-ATTTGGTTAAAGGCTTCAGAGACTAGCAGAC---AGAGAATGGGAGGAAAAGTGGGGTTGGGGCATAAAGTTGCTGGAGGGGCCAAAAGCCCAACGGGGGCCCTAGAGAACAAGGAAATC-------TTATCAGGAACACTTCCTAGAACACTCTACCTCACACT-TCCAGAGACACCCGTGCTATATTAATGCCGTTGCTCCAGGGGCAGGGTACGTATGTGTGTAGCTGGCCCAGCAGGTATAGCACACACCTA s rn3.chr10 110031236 466 + 110733352 CCCTACCC-AGGTGCTGGAGACAGGGTCTCACCTTGCAGCCACACAACAGCCCCTCCTCACTTGGATGTTTAAGGACCCTCACCCCA-----------TTTAGGGTACTCT-CTAC-----TAACCT-CCCCCTGGCTTCAGCCCTGCAGGGCAGGCAGGGGCTGATCAACTCTGCTTGGACACA-CCTCTCAGCACCAGGAGACCAACAGAGCTGGACACAC-----AATAGCCCTTGTCCTGTTGCCCTAAGTTGCCAGGAGAAGGCTTTCTGTACCCATTCCC-ATTTGGTTAAAGGCTTCAGGGACTAGCAGACAGAAAGAAATGGGAGGAAAGGTAGGGTTGGGGCATGAAGTTGCTGGAGGAGCCAAAAGCCCAACTGGGGCCACAGAGAACAGGGAAT---------CTATCAGGGACACTTCCTGA-ACACTCTA-----------------------------------------CCTCTCAGGGGCAGAGTACATAGGTGTGCAGCTGGCCCGGGAGGTATAGCACGCACCCA s canFam1.chr18 30414657 343 + 66173745 ---------GAG-------------------------------------GCCCCTCCTCGCCTGGATCTTCAACGGCCCGGGAGCC------------CCGGCAGCCCCCG----------GACCCCCGCCCCTGCTTCCAGCC------------------CTCGGCGACTC--CCTGCACCCAGCCCCTCAGCGCCAGGGCGGCCCCGGGGCCGGGCACCGGGCTAAACGGC-------------------GGCGCCA-----------------CCCACTCCC-GTTTGGTTAAAGGCTTCAGGGAGCAGCAGGGT--GCGGGGTGCGGGGGAGGGAGGG--------------------------------------CCGGCCCCTCGAAG-------------------CTCCCCGGCACGCT-------CCCCTCCTGCTCGGGCTGCCCAGGCACCAC------GCACCAAGGCTGCTGCCCCA-GCGCGGGGTGGAGACCCG-GTGACTGGCCCA-CGGGGACAGCACATGCTCA a score=103226.0 s hg17.chr17_random 1976251 217 + 2618010 --GGACACAGGCCAGAGGCAGGACAGGCATTAGTCTCT-CAGACACGCCCTGCCTCTGTGTGGCACTGATTATGTACTCTAC-TCTCCCGACCTGCTCCAAGGCCAGACAGCCAACAGGAAGGCAAAAATACACCAAAAAGAATTATTCAGTGGCTTCTGGGGG-----AAAAATCGTTAATGTGTTGGTTCCTTTCACCAAACCACAGCCTAAAAAAGTAACTCA s panTro1.chr10 44114838 218 + 135301796 --GGACACAGGCCAGAGGCAGGACAGTCATTAGTCTCT-CAGACACGCCCTGCCTCTGTGTGGTACTGATTATGTACTCCAC-TCGCCCGACGTGCTCCAAGGCCAGACAGCCAACAGGAAGGCAGAAATACACCAAAAAGAATTATTCAGTGGCTTCTGGGGG----GAAAAATCATTAATGTGTTGGTTCCTTTCACCAAACCACAGCCTAAAAAAGTAACTCA s mm5.chr11 120296994 209 + 121648857 --GGACACACGCCAGGAACAGGCAAACTGTGAGCAGCTACAGCGAACCCATGCCTCTGTATGGTACCGATC-TGTCCTCTGT-TCCAC--AACTGCTCCCAAACCAGGCGGCCAATGGCACTGAGAAAATATGCC---AAGAATTATTCAGTGGCTTCTGGGGA--------GATTGTTAATGTGTTGGTTCCTTTCACTAAACCACAGCCTAAAAAAGTAACTCA s rn3.chr10 110031702 211 + 110733352 --GGACACATGCCAGAAACAAGGAAGCTGTGAGCAGCT-CGCACAC-CCATGCCTCTGTGTGGTACTAAGTCTGTCCTCTCC-AC-----AACTGCTCCCAAACCAGGCAGCCAACAGCACTTAGAAAACATGCC---AAGAATTACTCAGTGGCTTTGGGGGG--GGGGGGGATCGTTAATGTGTTGGTTCCTTTCACCAAACCACAGCCTAAAAGAGTAACTCA s canFam1.chr18 30415000 199 + 66173745 AAACACACAGGCCTGCAGGAGGACAGGC--------CA-CAG-----CCCTGCCTC---GTG----------TGCCCTCCACGTCTCCCCGCCTGCTCCAAAACTAGACGGCCAACAGGAAGGCAAAAACGCGCCAAAACGAATTATTCAGTGGCTTCTGGGGGGGGGGGGGGATCGTTACCGTGTTGGTTCCTTTCACCAAACCACAGCCTAAAAAAGCAACTTA a score=274601.0 s hg17.chr17_random 1976468 878 + 2618010 CAAGATCCCAGAGCGGAAACGGTGCAGCAGGCTGCGGCTCCGACTTTCCAGATGTGGATGGGCGCTTTGGCCAAGTGGCCACTCC--AGA-GGGAGGCAGCAGGGACAACATGGGACCTGACCATC-GTCCCAAAGCAGGCTGCAGCCGCTCAGGGCCGTGGG-CCGGGNCCC--------------NTGATCACCA--------GTCAG--AAGTGTACACACATATCTGAAACATGCACCAAGA------------------------------------------------GCTG---AGCC-----------------------------NAGCAACACCAGTGC----------------------------------------CACCCCGAGCAGC-AGCCA-------------------------------------GGGGCCTCACTCTCCTG-----------GTGAGAGCT------GACCTGTCCCTGCTGGGTA----------TTCCTCTGAAATCTGAGCGTCCATGTTAGGATAAAAGAGGAGTTGGGGCAAAGTTNAAGGTGGAAGGGAAGACATATATCATGGTTTACTTGGCGGACAAGTTTGAGAGACCTGGCCTTGGCCAAAGCCCTCGATTCGCTGTGTCAGAAAAACTGAGGTGAGAAGAGACCACCACCCTNCTCCACCACCCTCTCAGNTAGGAAAGCGGGATCAACAGAGATCAGAAGGACAGCACACTCA--CACCTGCACATGAACACACCATCTA--TGTCAGGAAATCCAG---------GGGAAGGGGAAGANGGGGTGGAGTGGCTCCGCAGGGCTGACCTGACAGGGGACAGGAACACTCCCCTAGACCCAGGGA--AGTCGCCCCAAATCCAAAGCTCTTGAAAGGAGGTATGGCCTCGA-AACTCCAGAAGCCTCTTCTGCCAACGCACCGA---GGACCTGCACCTCCCATTCAGCACGCGTCGACCCTTACACCCTCCTCTTC---------------CACACTCCCTTCGCCTCC---AGGTCTGCAGCCTGGCAGAGG----TGCTCAAAATGGATGGCCAC---CCAC-AGCCAGG-ACAAAAGTGGGGGCTGCACAA s panTro1.chr19 81235161 871 + 82489036 CAAGATCCCAGAGCGGAAACGGTGCAGCAGGCTGCGGCTCAGACTTTCCAGATGTGGATGGGTGCTTTGGCCAAGTGGCCACTCC--AGA-GGGAGGGAGCAGGGACAACATGGGACCTGACCATC-GTCCCAAAGCAGGCTGCAGCCGCTCAGGGCCGTGGG-CCGGGCCC----------------TGACCACCA--------GTCAG--AAGTGTGCACACATATCTGAAACATGCACCAAGA------------------------------------------------GCTG---AGCC------------------------------AGCAACACCAGTGC----------------------------------------CACCCCGAGCAGC-AGCCA-------------------------------------GGGGCCTCACTCTCCTG-----------GTGAGAGCT------GACCTGTCCCTGCTGGGTA----------TTCCTCTGAAATCTGAGTGTCCATGTTAGGATAAAAGAGGAGTTGGGGCAAAGTT-AAGGTGGAAGGGAAGACATATATCATGGTTTACTTGGCGGACAAGTTTGAGAGACCTGGCCTTGGCCAAAGCCCTCGATTCGCTGTGTCAGAAAAACTGAGGTGAGAAGAGAccaccaccct-ctccaccaccctctcAG-TAGGAAAGCGGGATCAACAGAGATCAGAAGGACAGCACACTCA--CACCTGCACATGAACACACCATCTA--TGTCAGGAAATCCAG---------GGGAAGGGGAAGA-GGGGTGGAGTGGCTCCGCAGGGCTGACCTGACAGGGGACAGGAACACTCCCCTAGACCCAGGGA--AGTCGCCCCAAATCCAAAGCTCTTGAAAGGAGGTATGGCCTCGA-AACTCCAGAAGCCTCTTCTGCCAACGCACCGA---GGACCTGCACCTCCCATTCAGCACGCGTCGACCCTTACACCCTCCTCTTC---------------CACACTCCAATCGCCTCC---AGGTCTGCAGCCTGGCAGAGG----TGCTCAAAAAAGAGGGCCAC---CCAC-AGCCAGG-ACAAAAGTGGGGGCCGCACAA s mm5.chr11 120297203 835 + 121648857 GAAGATCCCAGAGGGGAAACAGTGTAGCAGGCTGTGGCTCAGACATCCCAGCTGCGGATGGGAGCTTTAGCCAAGTGGCCACACCAGAGA-GGGAGGTAGCAGGGAA-----GTGGCCTCACCATC---TCCAA--------GTAGTTTATCAAAGCTGCAAACCCTGGCCC----------------TGATCACCAAG------GCTAA--CAGAGCACACATAGAACTGAAAGATGAGCTGAGA-----------------------------------------CCAGCCTGCTG-GAAGCCGGGTGATGGTGGTGATCCCTGTTAAC--ACAGTGTTGCCACTGG----------------------------------------CTCCCTGCACAGC-AGGCA-----------------------------------------CCACACCCAGCTGCACACAACACAGGGGGGACTCTCTGGGACCATACTCTACAGAGGAAACTGTGGACTTTCTTTGAAATCTGAGTGTCTATGT-----CCAAGGAAGAAGTCAGGCAGAGTC-AAGGTAGGAGGGAAGTCACACATTATGGTTTACTTAGCGGAGAAGTTTGGGAGACCTGGCCTCAGCCCAAGCTCTCCATTCGCTGTGTCAGAAAGTCAAA------------------------CACAACACCCTCACAG-TAGGAAAACGGAATTAACAATGATCAGAGAAACAG----CCAA--CAGTCACAAATGGACACAGGATTTA-CTGTCAGGAAATCAAG---------GGCAAGGGACAG--GGAGTGGAG-----CTGCAGGGCTGGCTCAACAGGGAA-------AGTTCCCCAGACTCAAGAAGCAGGTGCTGCAAACCTGAAAGCCTTGAGCATAGCTCTATCCT------GTTCAGAAG------------------CAA---AGACCTACTACTCCTGTTTAACACATACCCAGCC--GCAGCCTCCTCTTC---------------CTCAT--------CCTCC---CAG---GAGGCTGGACTGAGG----CACT---------GGGCCAT---TCTC-AGCTTTACACAGCAGCCCAGCCAGTACCA s rn3.chr10 110031913 872 + 110733352 GAAGATCCCAGAGCGGAAACAGTGTAGCAGGCTGTGGCTCAGACACCCCAGCTGTGGATGGGAGCTTTGGCCAAGTGGCCACACCAGAGA-GGGAGGTAGCAGGGAA-----GTGGCCTCACCATC---TCCAA-GTGGGCTGTAGCTTATCAAAACTGCAAATCCTGGCCT----------------TGAACACCAAGGCTGCTGCTAGCACAGAGTACACACGGACCTGAAAGATGAACTGAGA-----------------------------------------ACAGCCTGCTAGGAAGCCTGGCGATGGT--------------------AGTGGTCCCTGTATAACTCAGTGTTGCCGTGGACTCCCTGCACTGATGGTACAACACCCAGACTAGC-AGCTAGACACAACAGAGGGGAGGACT------------CTCTGGGACCATATTCTACA------------GAGGAAACT------GACCCACCTCCTGCGGGT-----------TTTCTTTGAAATCTGAGTGTCCATGT-----GGAAGGAAGGAGTCGGGC--AGTC-AAGATAGGAGGGAAGTCACACATTACGGTTTACTTAGCGGAGAAGTTTGGGAGACCTGGCCTCAGCCCAAGCTCTCCATTCGCTGTGTCAGAAAGTCAAA------------------------CACAACACCCTCACAG-TAGGAAAACGGAATTAACAATGATCAGGAAAACAG----CCAA--CAGTCACAACTGGACACAGGATTTA-CTGTCAAGAAATCAGG---------GGAATGGGGCAG--GGAGTGGAG-----CTGCAGGGCTGGCTCAATAGGGAA-------CGTTCCCCAGACTCAATAAGAAGATACTGCAAACCTGAAAGCCTTGAGCACGGCTCTATCCG------GTTCAGAAG------------------CAA---AGATCTGCTACTCCTGTTTAACACACATCTAGCC--TCAGCCTCCTCTTC---------------CTCAT--------CCTCCCAAAAGGCTGGACCCATGCAGGAGGCCATTCT---------CAGCTATACACTAC-AGCCCAG-CCAGAATCAA----------- s canFam1.chr18 30415199 969 + 66173745 CAAGATCCCAGAGCGGAAGCGGTGCTGCAGGCTGTGGCTTGGGCTGCCCAGTGGTGGATGGGAGCTTGAGCCAACTGGCCACCTCAGAGAGGGGAGGCGACAGGGACAGGAGGGGGCTTGACCACCTGTCCCAAAGCAGGCCGCAGCCAATCAGAGCTGTGGGCTCACGCGCTGACCACAGAGGCTGCTGTTGACCA---------TCAG--CGGTGTGCACAAAGACCTGGAGCAAGAGCAGAAAAGCCTCCAGGGGAGACCTGGCATCCGGCAGAAACCAGAGCACCACACGGCTGAGCAGCC--------------ACATCTCCTCACCTGGACAAACAGCAGTGC----------------------------------------CACCCAGAGCAGCAAGCCA----------------GGGCCATGGGGAGGTCTCCCTGGGGTCATACTCAGG-------------GCAGGAGCT------GACCTGTTCCCACAGGGCT----------CTCCTCTGAAATCTGAGTGTCCGTGTTGGGATAAGGGAGGAGTGAGGGC-------AAGATGGGAAGGAAGGTGCACATCATGGTTTACTTAGCGGGCAAGTTTGGGAGACTTGGCCTCTGCCAAAGCCCTCGATTCGCTGTGTCAGAAAAGTCGGGAAAAAGAA---------------CACGACACCGTCACAG-TAGGAAAACTAAATTAACAAGAATCAGAAAGACA-----CCAAAGCAGTCACATGTGGACACAGGCTGTACCTGTCAAGAAACCAAGGTGATGGGAGGGAAGGGGCAG--AGTGCGGAGTGGCCCCGCTGGGCGGGCTTGACAGGAAC--GGGATGTTCCCCCAGACCCAAGGAACAGTTGCTCCAAATCCAAAAACCATGAAAGGAAACATGGCCTCACTAACTCTAGAAGCTTCTTCTATTACC----TAAATCAGATCTGCAATTGGTCTTCTCCGGGTGCCCACCCCCACAGCCTGCCTCTCACCTTCCAAGCCTGTCTCCTTCCTCTGCTCTCC---AGGTCTCCAGCCTGGGAGATG---------------GATGACTGC---CTCCTAGCCAGG-ACCAAAGTGGGGACCAGAAG- a score=65265.0 s hg17.chr17_random 1977346 555 + 2618010 NGGACAAGGAGGGCCTGTTTCTCCCCACTCCGAGGCAGATCATGACGTTTTCTTCATGGATACTTATGATATGATTCCA----------------ACTAACGC-------------CTGGATTCTACTTAGACAAGATCAGACTGAGGGGAGGGGGATGAAGTCACTAAATGACANAGAGTCAACAGCCAATATTTCCATTTTCAGGCTGACGCAGGTAGACACAGGACTTGTCTCTGAACACCTCGAGCAAAGAAAAGCTCATT-AACATGACA-AGTGTTGAT----GGTGCCTCCCTGTTCCCA---TCCTGTGGGCACACCAGGCCAAACTATTGGATAAAAATCCCACCATCCATAGGGTTAAGCCCTGTTGGGCCACAGT--TTTTCATCTTAC----CCACATCTGTGTGCTTTACAGAAGTCTGGGCCCCACAGAAAAGAAA-CCAGCAAC-CCGGTGAAAGGCCAGGGCTCACATGGCCA--GACACAGGGCTGTAGCCTCTTGGAGGTGGGTAGGGGCACC----CCCTCCNCCATCATATGCCTACAAGGAGCCTCCTGAGCCCAGCCAGGAAGGGCAGCAGCCTCTGGCGAGGAA s mm5.chr11 120298039 495 + 121648857 AACACTCAGAAAGCCTCTCGTCCTCCAGGCATGGGCACG-------GTCCACACCA-----------GCTCTGCTGCCA----------------GGCAGCAC-----------TTCTGTATACCAGTCA--------CAGAACCAAAGGGAGGGGATGAGGTCATCTGGTAACTCAGAATCAACAGTCCAGATTCCCACTCATA-TCCAACTCAGGCATCAATGGGACTG---TCTGAGCACCTTGAGC-CATAGTAGCCCACC-AAAACGCCAGGGTGGCACA----GGT-----CCTGCTTTCAGAGCCCT----GCACGCTGCGTCAAAC---TGAGTAAAAATCCTGCTGCCTACGAGGTAAAGGCCTGTCAGGC--CAGT--CTTTCCTTTCACCAGACCACATTTCTGTGCTTTTCAGGGATCCAGGGGCCCCAGAGAAGACA-CCAGCTATGTCAGCAGGAGGCCATG-------TGACCGCCCACACAGGGATGTAGCCTCTTGCAGGTGGGT-------------------------ATCCGCTTATGAGGAGCTTCCTGAGCCAAGCCTGGAAGGTGGGCAGCCTCCACTGGAAAG s rn3.chr10 110032785 502 + 110733352 AGCACTCAGAAAGCCTGTCCCTCTCCTCCTCTAGGCATG-------GGCCAGCTCT-----------GCT----TGCCA----------------GTCGGCATCAGCAACT---CACTGGATACCAGTTA---------AGAGACAAAGGGAGGGAATGAGGTCACCTGGTAACTTATAATCAACAGTCCAGATTTCCACCCATA-TCCGACTCAGGCATCAATGGGAGTG---TCTGAGCACCTTGAGC-CAAACCAGCCTACCAAAAATGCCAGGGTGGCAGA----GGT-----CCTGCTCCCAGAGCACT----GCATGCTGTGTCAAAC---TGAGTGAAAATCCTGCTGCCTACGAGGTAAAGGCCTATCAGGCCACAGT--CTTTCCTTTTACCAGATCACATTTCTGTGCTTGTCAGGGATCCAGG-GCCCCAGAGAAGACA-CCAGCAATGTCAGCAAGAGGCTACAGGCCATGTGACCA----CAAAGGGATGTAGCCTCTTATGGGTGGGC-------------------------ATCCGCCTATGAGGAGCTTCCTGAGCCAAGCCTGGAAGGG-GGCAGCCTCCACTGGAAAG s canFam1.chr18 30416168 549 + 66173745 TGGATATGGAGGGCACAGGCTTCTC---------------------CCTCTCTTCAGAGACTCTTAGGATGGGATTCCAAATCAGTGCCGCTACGACCAACATCGACAACTTTCATCTGGACCCTAGGTAGACAAAGCCACATGGCAGGGAGGGGCAGTAAGCCACTAAGT-ATTGAGAGTCAACAGTCAGAATCTCCACGGCAG-GCCGACCCGAGTCCAACCGGGACCG----GGGAGCATCTAGGAC-CAA------------GAGAAGATAGAATCGGACAGCATGGC-----CCTGTTCCTATCCCACG----GCACCCGGGGTCACACCCAGGGAGGGAAACCCTGCTGCCCCCAAAGTCATGCCCCACCAGGCTGCAGTGAGATTCTTTTCACCAGCCCACACCTCTGTGCTTTATAGGGGCTCAAG-CCCCCAGAGAAGCTGCCCAGCGACCTCCAGGAGAAGCCGAGACCCATGTGGCCA--GAGACAGGGCAGTAGCCTCTTGAGGGCAGGC------ACCGCAGGCAGCTCCCGTCACAGGCCTAGGAGGAGCTTCCCGAGCCAGGGCTGGAAGACTAGCTGCCTCTGTCGAGGGG a score=240607.0 s hg17.chr17_random 1977901 705 + 2618010 CTGAGAGCAGGAGGCAGGCTGCGCCCCCACAGGGAGGCACCTCCAGCAGAAGCCAAGCAGCTGATCCNCTGGAAGACACAGATCCCAAAGGGAGGCAGAAGGCAGGCCCGAAGCCAAGAGCTGCCAGCGTGGACCAGCGGAGAAGAGGGACAAGACCCGGNCCCTGNGAGACTGNTAGCCCNTTGTCT-GCACTGGTGGAGACCCCCAAGGCTCTCAGAGTGAGGCAGGGACAAGGAAGAAAGGGCGGTGCCCGGT-GGGCCCCCACCCACTCTGCCT----GGAAGCACCA-CCCGCAGCATGGAAACACCTCAGGGATCAAGCGGGCGGCGAGACCTGCAG--CCCAC------------------GGCGCGG----------------------GCAGCCTATAGGAACAAAGCTGAGGCCAG-AGGAAGACGGCCAGGG------------AACGCTTGGCCATAG-------CCCTGTGGCCACCCACAGTGACTCCCTCATCCCTGTAATGCCACCACCCAAGGCCAGAGGTGGTGGGTGTGGAAGCAG------CGTGGGGCGCCCC--AAGGGACCCCAGTTTCACCTACCCCGCCACTAGATCAGCCCAAGCCCTAGACACA-GATGT--AGCCAAGGCTCAGTGGAGGGGGGCATGACAGAACCCCNATGTCTCACCTCCTACGGACC--------------------AGGAGCTGGTGGTGGGCA-CAGATTCCTTGAGCTCTGACGCA-GCAGGCGCCACTTGGCACCCCA-----------------GCCCAGGTCCAGCAAGCCAGCAGA s panTro1.chr19 81236586 699 + 82489036 CTGAGAGCAGGAGGCAGGCTGCGCCCCCATAGGGAGGCACCTCCTGCAGAAGCCAAGCAGCTGATCC-CTGGAAGACACAGATCCCAAAGGGAGGCAGAAGGCAGGCCCGAAGCCAAGAGCTGCCAGCGTGGACCAGCGGAGAAGAGGGACAAGACCTGG-CCCTG-GAGACTG-TAGCCC-TTGTCT-GCACTGGTGGAGACCCCCAAGGCTCTCAGAGTGAGGCAGGGACAAGGAAGAAAGGGCGGCGCCCGGT-GGGCCCCCACCCACTCTGCCT----GGAAGCACCA-CCCACAGCATGGAAACACCTCAGGGATCAAGCGGGCGGCGAGACCTGCAG--CCCAC------------------GGCGCGG----------------------GCAGCCTATAGGAACAAAGCTGAGGCCAG-AGGAAGACGGCCAGGG------------AACGCTTGGCCATAG-------CCCTGTGGCCACCCACAGTGACTCCTTCATCCCTGTAATGCCACCACCCAAGGCCAGAGGTGGTGGGTGTGGAAGCAG------CGTGGGGCGCCCC--AAGGGACCCCAGTTTCACCTACCCCGCCACTAGATCAGCCCAAGCCCTAGACACA-GATGT--AGCCAAGGCTCAGTGGAGGGGGGCATGACAGAACCCC-ATGTCTCACCTCCTACGGCCC--------------------AGGAGCTGGTGGTGGGCA-CAGATTCCTTGAGCTCTGACGCA-GCAGGCGCCACCTGGCACCCCA-----------------GCCCAGGTCCAGCAAGCCAGCAGA s mm5.chr11 120298534 673 + 121648857 GTGGGGTGAGGAGGCAGGCTTGGAACCTGCAGAGAAGCACCTCC-----AAGTCGAACAGCGGATCC-CTGGAAGACGCAGATCCTGAA-GGAGGCAGAGTGAGGGCCCAGAGCCAAAAGCTGC-------GGACACTGGGGAAGAA----CAGACCTGG-CCCTA-GGGCCAA--AGCCC-TTGTCTGGCGATGGTGGAGGCCTCC-AGGCTCTCACAGTGACACAG------GGAAGAATGGTTGCCCTCAGTG-GGGCCCCCGACCAATCTGCCT---GGGAAACAACACCCCACAGAACGGG---GCTTCAGAAA-CACGTGAGTGACAGGTCTCCCAA--CCCACAAGGG-----AGGGCCCTGGGGCGGAGACCCCAAC------------GAAGCCTATAGGAACTAAGCTGAGGCCAGAAGGAAGACGGCCAAGG------------ACAGGTAGGCCACAG-------CCCTGTGGGCACCCACAGTGACACCTTGGTCCCTGCAATGTCACCACCCAGGGCCAGAGGTGGTGGATGTGGAAGCAG------CGTGGGGGG--CC--GATAGCTCCCAACTTCACTTACTCTGCCACTGCCTTAACCCAAGCCCTAGACCCACAATGCCAAGCAAAGGCTCAGAG--GGACCACGTGGCAGA-------------------------------------------------GGAATGGAGAAGTGCAGCAGA-------AGGTAAGCCGCAGGCAGGC----CCCGGTACCCCAGGG---GAGTACATCCTGCCCAGGTCCAGCAAGCCCGCAGA s rn3.chr10 110033287 684 + 110733352 CTGGGGTGAGGAGGCAGGCTTGGGACCTGCAGAGAAGCACCTCC-----AAGTCGAACAGCGGATCC-CTGGAAGACGCAGATCCTGAA-GGAGGCAGAATA-GGGCCCAGAGCCAAGAGCTGC-------AGACACTGG-GAAGAA----CAGACTGGG-CCCGA-GGGCCAA--AGCCT-TTGTCTGGCCATGGTGGAGGCCTCC-AGGCTCTCACAGTGAGACAG------GGAAGAATGGGTTGCCCCAAGTGGGGCCCCTAACCAATCTGCCT---GGGAAACAACACCCCACAGAACGGG---GTTTCAGAAA-TACACGAGTGACAGGACTCCCAA--TCCACAAGGT-----AGGCCCCTGGGGCGG----CCTAGCTGAGGCCCCAATGAAGACTCTAGGAACTAAGCTGAGGCCAGAAGGAAGACGGCCGAGG------------ACAGGTAGGGCACAG-------CCCTGTGGGCACCCACAGTGACACCTTGGTCCCTGCAATGTCACCACCCAGGGCCAGAGGTGGTGGATGTGGAAGCAG------CATGGGGGC--CC--GATAGCTCCCAATTTCACTTACTCTGCCACTGCCTTAAGCCAAGCCCTAGACCCACAATGCCAAGCCAAGGCTCAGAG--GGACCAAGTGG-----------------------------CA--------------------GAGGAATGGACAAGTGCAGAAGA---------ATGTGAGCCA-GCAGGCAATCTCCTGTACTCCAGCGGCAGAGTATGTTCTGCCTGGGTCCAGCAAGCCAGCAGA s canFam1.chr18 30416717 754 + 66173745 ---CCATGGGGAGGTGGGCTCAG-CCCCGGAGAGATGCACCTCC---ACAAGCTGAGCAGCGCATCC-CTGGAAGACACAGATCCCAAAGGGAGGCAAAAAG-TGGCCCACAGCCAAGAGCCGG-AGCACATTCAGGGCGAGGTGAGGGACAGGACCTGG-CCCTG-GAGACTG-TAGCCC-TTGTCTGACACTGGTGGAGACCCCCCCCACTCTGGCCCGCAGGCAG------GGA--GAGGGGCCACCCCAGAC-AAGCCCCAAACCACCTGGTTTCCCGGGAAGTATCCCTTCACAGCATGGAAACACGGCTAGGA-TAGGTGGGCAGCAGGCCTTGACACTCCCACATGGGCCATAGGGTTCCCCGGATGG-GGCCCACGT------------GACACCTGCAGGAACAAGGCTGCGCTC--------GACGGCCAGAGCCCACACGTGTTGATGAGAGGCCAGAAGGAAGACACCTGGGGGCACC--TAGTGACTTCTTGGTCCCTGCTAGTCTGTCACCCATGGCCAGAAGCGGTGGGCACGGAAGCGGTGGGGTCGGGGGGCGCTCTGGGATGGCCCCTGGTCTCACCCACCCGGCCACTGGTTCAGCCCAAGCCTTCCAGAGA-CATGCGAAGCCAAGGCTGTGCAGAGGTGAGAGCGGCAGAGCCCC-GTATCTGATCCTCTGGGGTCCTGGGTCAGGCACCGAGGCAGAGGGGCCGGGCTGGCGGG-CAGA-TTCCCAGGCCCTGCCGAA-GCAGGAGCTGCCCAGCAC-CCA-----------------GTGCAGGCCCAGCATGCCAGCAGA a score=152410.0 s hg17.chr17_random 1978606 209 + 2618010 AGCAAAAGCACAAC-TAAACCCAAAAAA--------------CGAACACG---------NGGAAAAC-----AGACACAAGA----AGTGACACCCACAGGTCAAAGGTCACCAGAAGCACCAGCACTTTACCGCTGCACAAAACCTCACCAG-GCACGGACGACA--------CCACGGCACCGGCAAGAGACGGAAGCAGGAAGGGCAGAGNGAGTAAGTCACNTTTCGGTACAATTGCAAA--AGATATC s panTro1.chr19 81237285 206 + 82489036 AGCAAAAGCACAAC-TAAACCCAAAAAA--------------CGAACACG----------GGAAAAC-----AGACACAAGA----AGTGACACCCACAGGTCAAAGGTCACCAGAAGCACCAGCACTTTACCGCTGCACAAAACCTCACCAG-GCACGGACGACA--------CCACGGCACCGGCAAGAGACGGAAGCAGGAAGGGCAGAG-GAGTAAGTCAC-TTTCGGTACAATTGCAAA--AGATATC s mm5.chr11 120299207 219 + 121648857 AGCAAAACCACAAC-AAAACCCAAAAAAAAAAAAAAAAAACCCAAATACG--------------CAC-----ACACACAAAA-CACAGGGACAGCCACAGGTCAAAGGTCACCAGAAGCACCAGCACTTTACGGCTGCACAAAACCTCACCAG-GCACGGACAACA--------CCACGGCACCGGCA--AGACGGAAGCAGGAAGGGAAGAG-GAGTAAGTCAC-TTTCGGTACAATTGCAAAAGAGATATC s rn3.chr10 110033971 221 + 110733352 AGCAAAACCACAACAAAAATCCAAAAGA--------------CAAACACACATACACACACGCACAC-----ACACACAAAAACACAGGGACAGCCACAGGTCAAAGGTCACCAGAAGCACCAGCACTTTACGGCTGCACAAAACCTCACCAG-GCACGGACAACA--------CCACGGCACCGGCA--AGACGGAAGCAGGAAGGGCGAAG-GAGTAAGTCAC-TTTCGGTACAGTTGCAAAAGAGATATC s canFam1.chr18 30417471 216 + 66173745 AGCAAAAACACAAC-CAAATCCAAAAAA--------------CAGACACG---------GGAATAAC-----AGACACAAGA----AGTGACACCCACAGGTCAAAGGTCACCAGAAGCACCAGCACGGGAC-GCTGCACAAGACCTCACCAG-GCTCAGACGACAGCACTACGGCACGGCACCGGCAAGAGACGGAAGCAGGAAGGGCAAGG-GAGTAAGTCAC-TTTCGGTACAATTGCAAAAGAGATAGC s galGal2.chr3_random 679640 202 + 1636275 AGAGAGATTCCAAG-TGAACCT--------------------CGAGCTCA---------GGGAAAACAACGGAAGCACGAGA-----ACGACAG-CACACGGCAAAGGCAGCCACTGACACCACCACAGCACAGCGCCACACGGAGCCGGGAGAGCACAGAGAGCA--------ACACGA---GGGGACACGAGGGGGGCCAGCAAGGTCGA--GAATAAGTCAC-TTTTGGTACAATTGCAAAA-AGATATC a score=68483.0 s hg17.chr17_random 1978815 89 + 2618010 AAAGAGGACG---------GCCTTCTGGTC-GGCTCACGGCTTGGC---TTTTTTTTTTTTGTCT--------------TTTTTTTAAACTAAGTTTTATAAAT--AATGTCTGATAA s panTro1.chr19 81237491 92 + 82489036 AAAGAGGACG---------GCCTTCTGGTC-GGCTCACGGCTTGGCtttttttttttttttgtct--------------tttttttAAACTAAGTTTTATAAAT--AATGTCTGATAA s mm5.chr11 120299426 87 + 121648857 AAAGAGGACG---------GCC-TCCGGTA-GGCTCGCAGCTTGGC---TTTTTTTTTTTTTTC---------------TTTTTTTAAACTAAGTTTTATAAGT--AATGTCTGATAA s rn3.chr10 110034192 104 + 110733352 AAAGAGGACA---------GCC-TCTGGTA-GGCTCGCAGCCTGGC-CTTTTTTTTTTTTTTTCTTTTTTTTCTTTTTCTTTTTTTAAACTAAGTTTTATAAGT--AATGTCTGATAA s canFam1.chr18 30417687 103 + 66173745 AAAGAGGGCGCCAGCACGCGCCTTGTGGTC--GCTCACGGCTTGGC---tttttttttttttttttttgtc--------ttttttAAAACTAAGTTTTATAAAT--AACGTCTGATAA s galGal2.chr3_random 679842 68 + 1636275 AAACAGGACT--------TGCC-TCT-------------------T---TTTTTGTCTTTTTTTT--------------TCTTTTT---CTAAGTTTTATAAAT--AAAGTCTGATAA s fr1.chrUn 28849091 87 - 349519338 AAATAAATCA---------GTC-TAAAATCTGGCTCAGGTCTTTGC---TTTTTTTATCTTTTCG--------------TTTTCTTAAAACAA----TAGAAATGCACTGACTGAAAA a score=52842.0 s hg17.chr17_random 1978904 65 + 2618010 CTCTGTGTATATAAAAACTAAACTCCAACAGCCACAAAGAGGTGTCCGTAAGTTTACAAGAAAGG s panTro1.chr19 81237583 65 + 82489036 CTCTGTGTATATAAAAACTAAACTCCAACAGCCACAAAGAGGTGTCCGTAAGTTTACAAGAAAGG s mm5.chr11 120299513 61 + 121648857 CTCTGTG--TATAAAAACTAAACTCCAACAGCCAC--AGCGCTGTCCCCAGGTTTACAAGAAAGG s rn3.chr10 110034296 61 + 110733352 CTCTGTG--TATAAAAACTAAACTCCAACAGCCAC--AGAGCTGTCCCCAGGTTTACAAGAAAGG s canFam1.chr18 30417790 65 + 66173745 CTCTGTGTATATAAAAACTAAACTCCAACAGCCACAAAGACTTGTCCATAAGTTTACAAGAAAGG s galGal2.chr3_random 679910 59 + 1636275 CTCTT----TATAAAAACTAACCTC--GGAGCCACAAACAGTTTGCGGGAGGTTCGTGAGAAACt a score=6201.0 s hg17.chr17_random 1978969 31 + 2618010 GAttttttttctttttttttctttttttttt s panTro1.chr19 81237648 31 + 82489036 GAttttttttgtttttttttctttttttttt s mm5.chr11 120299574 13 + 121648857 GAT------------------TTTTTTTTTA s rn3.chr10 110034357 14 + 110733352 GATT-----------------TTTTTTTTTC s canFam1.chr18 30417855 29 + 66173745 GATTTTTTTTTTGTTTTTT--TCTTTTGTTA a score=350792.0 s hg17.chr17_random 1979000 774 + 2618010 AACTAGCAAAGTTTCT-ATTATACTTTCTTCCCTTTTCCATTCATATGGTCAAATGGTCTTCTTG--CTTGTTTTTTTTCTAAAAGACAGTT--TTATAAATACTCTGCAGCTC-TTTTTT---CTTTAACTTTTAAACATATAATTAATTTAATAACTTTGTAAAAGGAACTTCTCTCTTTTAAATAAAGGGCTATATAACCACACAAATAGGTCATGTAAACAGTGACACGGGACCCATCGCAGGGCACACTGGACCCACCCTCACGTTAAGCGCACAACCAGNAGA-TTTGGTCTTGTTCAGTGCAACGGGTCAGGCCTGA-----GTGCACAG---------------CCCCTGGGCCCAGCTGCACG-------------CCCCCA-----GCACCACT-GCGCCCAGGCTGGTGGTCCA------------CCCA-TCAGGGCCTTCAAGCCCGC------------------------------------------CCTAC-TCTCAGA-GCAGAGCC-CATCT--------CTTCATGCTGGGCTAAGCTGAGCTGCTCCCCTGGGGCTAAAGA--------GAGTGAA-------TCCTTCCCAGCCCG-------CGAGCCTG-----------------TGGCCNACTCGGGAGTGGAGGGAA------------------------CACTGGGACCCT----------CACTGCTCGGGGACACGCGAGGCCCAGCGTGCCTGCTCCTTCTCTCTCCCGCAACTC------TCTCTAGTCCGTTCCCACAGCACCAACTCTGGACTCCAAGCC------TGCATGGCCCTGGTACAAAAGGGGTTGGGGCGACCCCACGTCACCGCCGAACTGACCAATCCCAACAT-ACAAAACACACG-ACGACNATGACGAGATCA----------------AAGGGGCTCAGCCCGGCGCCCCTGGGGTACAGGTTGTGCTTTGCa s panTro1.chr19 81237679 773 + 82489036 AACTAGCAAAGTTTCT-ATTATACTTTCTTCCCTTTTCCATTCATATGGTCAAATGGTCTTCTTG--CTTGTTTTTTTTCTAAAAGACAGTT--TTATAAATACTCTGCAGCTCTTTTTTT---CTTTAACTTTTAAACATATAATTAATTTAATAACTTTGTAAAAGGAACTTCTCTCTTTTAAATAAAGGGCTATATAACCACACAAATAGGTCATGTAAACAGTGACACGGGACCCATCGCAGGGCACACTGGACCCACCCTCACGTTAAGCGCACAACCAGC-GA-TTTGGTCTTGTTCAGTGCAACGGGTCAGGCCTGA-----GCGCACAG---------------CCCCTGGGCCCAGCTGCACG-------------CCCCCA-----GCACCACT-GCGCCCAGGCTGGTGGTCCA------------CCCA-TCAGGGCCTTCAAGCCCGC------------------------------------------CCTAC-TCTCAGA-GCAGAGCC-CATCT--------CTTCGTGCTGGGCTAAGCTGAGCTGCTCCCCTGGGGCTAAAGA--------GAGTGAA-------TCCTTCCCAGCCCG-------CGAGCCTG-----------------TGGCC-ACTCGGGAGTGGAGGGAA------------------------CACTGGGACCCT----------CACTGCTCGGGGACACGCGAGGCCCAGCGTGCCTGCTCCTTCTCTCTCCCGCAACTC------TCTCTAGTCCGTTCCCACAGCACCAACTCTGGACTCCAAGCC------TGCATGGCCCTGGTACAAAAGGGGTTGGGGCGACCCCACGTCACCGCCGAACTGACCAATCCCAACAT-ACAAAACACACG-ACGACAATGACGAGATCA----------------AAGGGGCTCAGCCCGGCGCCCCTGGGGTACAGGTTGTGCTTTGCa s mm5.chr11 120299587 703 + 121648857 AACTAGCAAAGTTTCT-ACTATACTTTCTTCCCTTTTCCATGTATACGGTCAAATGTTTTTTTTGTTTTTGTTTTTGTTTTTTAAGACAATT--TTATAAATACTCTGCAGCTTTTTTTTTTCGTTTTAGCTCTTAAACATA----TAATTTAATAACTCCGTAAAAGGAACT--TCTCTTTTAAATAAAGGGCTATATAACCACACAAATAGGTCATGTAAACAGTGACACCGGACCCATC---GGACACAC-AGACACACCTTCCACCCACACTCATAACCGGC-GA-TTCGGTCTTGTCCGGTGCACTGTGCCAGGC----------------------------------------TCCAGCACCATG-------------GTTCCT-----GCCCCA---GTGCCCAGGCTGGTGGCCTA------------TTCACCCAGGGGCGTCAAGACATA------------------------------------------ACCACTTTTCAGG-GCAGAGCC-CATCT--------CTTCCTTCTGGATTAAGCTGAGA-GCCCCACT-GGACTTCTGA--------AAGGAAA-------GCGCTCAAATCCCA------------CTG-----------------CAGACCACCAGGGAGACAAGGGCA------------------------------------------------------------GCCCCAAGACCAGTACACTTGCCCA--------CGTGCA-----------CTCTCGTCCACTCCCACAGCGCCCACTCTGGACTCCTAGCC------TGCACGGCCTTGGTACAAAGGGGTTAAGGGCAACCCAACATCACTGTTGAACTGGCTGATCCCAACGT-ACGAAACACAGGCGTGACAACGAAGATGATC----------------AAGGGGCTCAGCCCAGTGCCCCT-GGGTGCAGGTTGTGCTTTGCA s rn3.chr10 110034371 694 + 110733352 AACTAGCAAAGTTTCT-ACTATACTTTCTTCCCTTATCCATTTATACGGTCAAATGTTGTTT-----TCTGTTTTTGTTTTTTAAGACAATT--TTATAAATACTCTGCAGCTTTTTTTTCT--TTTTAGCTCTTAAACATA----TAATTTAATAACTCCGTAAAAGGAACT--TCTCTTTTAAATAAAGGGCTATATAACCACACAAATAGGTCATGTAAACAGTGACACCGGACCCATCGCAGGACACAC-TGACACACCTTCCACCCACACTCATAACCGGC-GA-TTTGGTCTTATCCGGTGCACTGTGCCAGGC----------------------------------------TCCAGCACCATG-------------GTTCCT-----GCCCCA---ATGCCCAGGCTGGTGGCCTA------------TCCATCCAGGGGCTTCAAGATATA------------------------------------------ACCACGTTTCAGG-GCAGAGCC-CATCT--------CCTCCTTCTGGATCAAACTGAGG---CCCACT-GGAAATCTGA--------AAAGAAA-------GCTTTCAAGTCCCC------------CTG-----------------CAGACCACCAGG-----AAGGGCA------------------------------------------------------------GACCCAAGCCCAGTACACTTGCCCA--------CTTGCA-----------CTCTCGTCCATTCCCACAGTGCCCACTCCGGACTCCTAGCC------TGCATGGCCTTGGTACAAAGGGGTTAGGGGCAACCCAACATCACTGTTGAACTGACCGATCCCAACGT-ACAAAACACAGGCGTGACAACAAAGATGATA--------------TCAAGGGGCTCAGCCCGGTGCCCCT-GGGTGCAGGTTGTGCTTTGCA s canFam1.chr18 30417884 761 + 66173745 AACTAGCAAAGTTTCT-ATTATACTTTCCTTCCTTGTCCATATATACGGTCAAATGTTCTTGCTT--GTTTTTTTTTTTTAAAAAGACAGTT--TTATAAATACTCTGCAGCTC-TTTTTT---CTTTAGCTTTTAAACATA----TAATTTAATAACTTCGTAAAAGGAACTCCTCTCTTTTAAATAAAGGGCTATGTAACCACACAAATAGCTCATGTAAACAGTGACACGGGACCCATCGCAGGACACG--GGACACACCCTTCACGTATGCTCACAACCAGT-GA-TTTGGTCTTGTTCAGTGCAATGTGTCAGGCTGGA-----GCGCCGTG---------------GCCCCTGGCCCAAAGCCACAGAACGCCCTGTCCCTCCCA-----GCGCCTGTAGCGCCCAGGCTGGTGGCCCG------------CCCATGCAGGGCCCTCGAGGACAC------------------------------------------CCTACTCGTAGGA-GCAGAGGC-CATCT--------ATGCCCATTG--------------GCCGCACT---------GA--------GAGTGAACCACAGCCCCCTGCCAGCCGGCAGCGGTCAGGGCTG-----------------TGGGCCACCAGG-AGTGGCCAGCG--------------GCCCCCTG--CCCTGGAGCCCT----------CCCTGCTCAAAC--TCGCAAGCCCCAGAGTGCGCGTCCG-----------GTG-----------TTCC--TCTGTTCCCACGGGGCCAGCCCTAGACTCCAAGCC------TGCACGGCCTTGGTACAAAGGGGACTGGGGCGACCCCACACCACCGCCGAACTGACCAATCCCAACGT-ACAAAACACACG-ATGACAACGACGAGATCA----------------GAGGGGCTCAGCCCGGCGCCCCCGGGGTGCAGGTTGTGCTTTGCa s galGal2.chr3_random 679995 904 + 1636275 AACTAGCAAAGTCTCCGAGAATACTGCC---------CCATTTCTATGGCCAAATATT---------CTCGCCCTCTCGGATAAAAAAAGCTGACTATAAATACGCTCTCTCTTCTGTCTG---ATTTTCATTTTAAACTTAGA--TAATTTAATAACTCTTAAAACGATGTT--TCTCTTTAAATAAAAGGGCTATTTAACCACATAAACTGGTCGTGTAAACCATCACACT------------AGAGACACTTGA--TACCCTCAAAACACGGGAACAACTAGT-GATTTTGGTCTTGTTCAGTGCAACGCATTAGGCACAAAACCGGCCTGCAGTCAGCAAGGTACCTCCCCCCCCCCCCAGTGCTGGG-------------CCCCCACACAGACCCCATC-CCATCCCCTCTGCTGGGGCAGAGGCAGTGGGGCACG-CCAGCATCTTCCCGTCCACCGCTGCTATCCACACTCTACTGCAATGGAAGCCTGAAGGAAACTCACTGCTCGGGCACAGAGGCGCGCCTAGAAATGAATACCACATCTATTACACAGAACACCCCAGCTGCAACTACAGGTACCGGATGAGACAA-------AAGCAGCAGGCTCG-------GGTGCCGGGCAGTCAGGCGCCCGGATGCACCACCTGGAAGAGTAATGAAATAAAGCCTTTGGAAGCGACTGAAAACCGGGGTTCCGGGAAGAAAGCCTCCCTCCGGGCCTCTCGCTGCGCAGCGCAGACTTCCT-----TTGGCTACAACACCGAGATCTTACAGCCTGTCCCAAGGG---CAGCTGGGGGCTACAGACCGCTGGGTGGGAGGTGCTGTCTGCACAGGACAAGGGATG------CATCACCACTGCTCATACCAATCTGAACACAACAAAACAAAACCAGAGCGATCAGCAGGCCAGTCCTGGGCCAAGTAGAAGGAACCCTGACCCGTGT-----GGGGAGGGTTTGTGCTTTGGG a score=30208.0 s hg17.chr17_random 1979774 67 + 2618010 gggaangagagaagggtggggaagagagggaggaaagagaagagaaggaaacagagggacagggcag s panTro1.chr19 81238452 66 + 82489036 gggaa-gagagaagggcggggaagagagggaggaaagagaagagaaggaaacagagggacagggcag s mm5.chr11 120300290 63 + 121648857 GGGAA-GGAAACAGGGAAGGGAGAGGAGAAAGGAAGGGAAATGAAAGGA---AGAGGGACGGGGCTG s rn3.chr10 110035065 63 + 110733352 GGGAA-GGAAAGAGGGAAGGGAAAGTAGAAAGGAAGGGAAAAGAAAGGA---AGAGGGACGGGGCTG s canFam1.chr18 30418645 56 + 66173745 gggga-gggaggaggcggg-----agaggaagaaaggagaggagaaaga-----agggacagggCTG a score=16461.0 s hg17.chr17_random 1979841 20 + 2618010 CCAAATTCGCCATGTGCCTA s panTro1.chr19 81238518 20 + 82489036 CCGAATTCGCCATGTGCCTA s mm5.chr11 120300353 20 + 121648857 CCAACTCTGCCACGCACCTA s rn3.chr10 110035128 20 + 110733352 CCAACTTTGCCACGCACCTA s canFam1.chr18 30418701 20 + 66173745 CCAAACTCGCCATGCGCCTA s galGal2.chr3_random 680903 20 + 1636275 CCAGGCTGGTTTTGTGCCTA a score=26303.0 s hg17.chr17_random 1979861 39 + 2618010 GTGGCCCCGCAAAGACCCGCCTGGGCA-GACGCGCGTCCC s panTro1.chr19 81238538 39 + 82489036 GTGGCCCCGCAAAGACCCGCCTGGCCA-GACGCGCGTCCC s mm5.chr11 120300373 40 + 121648857 GTGGCCCCTCAAAGACCTGCCTGGCAACTGCACGTGTCCC s rn3.chr10 110035148 40 + 110733352 GTGGCCCCTCAAAGACCTGCCTGGCAACTGCACGTGTCCC s canFam1.chr18 30418721 39 + 66173745 GTGGCCCCTCGCAGACCCGCCCGGGCA-AGCGCGCGTCCC s galGal2.chr3_random 680923 40 + 1636275 ATTGCCCTGCACAGACAAGCTCAGGCAACACTCGCTTCAC s fr1.chrUn 148496781 34 + 349519338 GCAGCTCCACCCTTGTCCGTCTTTGCG------GCCCCCT a score=549408.0 s hg17.chr17_random 1979900 290 + 2618010 TACGATCGGGCATCCGTCTTGGACTTTACTATTGTGATGACGCTGGTGGCGGCC---ACCTTGCCTGGGACGAGGGGCCCCAGGCCGGCGGCAAGGG--------------------------GGCCCCGGGCTGGCGCCACGGGGCTGCGGGCCACCGTCCGGGCGAAGGTCTGCAGCGCCTCGTACTTGGAGCGCAGCGCGTCGAGCTCCAGCTTCATGCTGGCGTTCTCTGAGGCCAGCTTCTCCACCTCCTGCTGCAGCTCCGCCTTCTGCTTCTCCAGCTCCTCCTTCTGCGTCACCCGCTTCACGCGGCAGCT s panTro1.chr19 81238577 290 + 82489036 TACGATCGGGCATCCGTCTTGGACTTTACTATTGTGATGACGCTGGTGGCGGCC---ACCTTGCCTGGGACGAGGGGCCCCAGGCCGGCGGCAAGGG--------------------------GGCCCCGGGCTGGCGCCACGGGGCTGCGGGCCACCGTCCGGGCGAAGGTCTGCAGCGCCTCGTACTTGGAGCGCAGCGCGTCGAGCTCCAGCTTCATGCTGGCGTTCTCCGAGGCCAGCTTCTCCACCTCCTGCTGCAGCTCCGCCTTCTGCTTCTCCAGCTCCTCCTTCTGCGTCACCCGCTTCACGCGGCAGCT s mm5.chr11 120300413 290 + 121648857 TATGACCGAGCATCCGTCTTGGACTTTACTATTGTGATGACGCTGGTGGCAGCC---ACCTTGCCAGGAACCAGGGGCCCCAGGCCAGCAGCAAGGG--------------------------GACCCCGAGCTGGGGCCACAGGGCTGCGGGCCACGGTCCTGGCAAAGTTCTGCAGGGCCTCGTACTTGGAGCGCAGGGCATCGAGCTCCAGCTTCATGCTGGCATTCTCCGAGGCCAGCTTCTCCACCTCCTGCTGGAGCTCCGCCTTCTGCTTCTCCAGCTCCTCCTTCTGTGTCACCCGCTTGACGCGGCAGCT s rn3.chr10 110035188 290 + 110733352 TATGACCGAGCATCTGTCTTGGACTTTACTATTGTGATGACGCTGGTGGCAGCC---ACCTTGCCAGGGACCAGGGGCCCCAGGCCAGCAGCAAGGG--------------------------GACCCCGAGCCGGGGCCACAGGGCTGCGGGCCACGGTCCTGGCAAAGTTCTGCAGGGCCTCATACTTGGAGCGCAGCGCATCGAGCTCCAGCTTCATGCTGGCATTCTCAGAGGCCAGCTTCTCCACCTCCTGCTGTAGCTCCGCCTTCTGCTTTTCCAGCTCCTCCTTCTGTGTCACCCGCTTCACTCGACAGCT s canFam1.chr18 30418760 290 + 66173745 TACGACCGGGCGTCCGTCTTGGACTTTACTATCGTGATGACGCTGGTGGCGGCC---ACCTTGCCGGGGACGAggggccccaggccggcggcgaggg--------------------------gtccccgggccggcgccacggggctgcgggccACGGTCCTGGCGAAGTTCTGCAGGGCCTCGTACTTGGAGCGCAGCGCGTCGAGCTCCAGCTTCATGCTGGCGTTCTCCGAGGCCAGCTTCTCCACCTCTTGCTGCAGCTCCGCCTTCTGCTTCTCCAGCTCCTCCTTCTGCGTCACGCGCTTGACACGGCAGCT s galGal2.chr3_random 680963 290 + 1636275 TAAGACCGGGCGTCCGTTTTGGATTTCACTATTGTGATGACACTAGTGGTAGCG---ACCTTGCCAGGGACGAGGGGCCCCATGCTGGAGGTGAGAG--------------------------GGCCCCGCACCGGGGTGACAGGGCTCCGGGCCACGGTTCTGGCGAAGTTCTGGAGTGCCTCGTATTTGGAGCGGAGAGCATCGAGTTCCATTTTCATGCTGGCGTTCTCAGAGGCCAGCTTCTCCACCTCCTGCTGCAGCTCTGCCTTCTGCTTCTCCAGTTCCTCCTTCTGGGTTACACGCTTGACCCTGCAGCT s fr1.chrUn 148496815 317 + 349519338 CACGACCGCGCATCCGTCTTTGACTTCACTATCGTGATCACGCTCGTCGCCGTCGCGGCCTTTCCTGGTATGAGCGGACCGATGAC--CGACGACGGCACCCCTCCCCCCCCTCCTCCGGCCCGAACCCCGACTCCCACCGTGGGAGTCCGGGCCACAGTTCTGGCGAATGTCTGCAGGGCCTCGTACTTCGACCTGAGCGCGTCCAGCTCCACGCGCATGGAGGCGTTCTCATTGGCCAGTTTGTCCACCTCCTGCTGCAGCAGCGCCTTCTGCTTCTCCAGCTCCTCCTTCTGGGTCACCCTCTTCACCCTGCAGCT s danRer1.chrUn 154830663 290 - 367113659 TATGACCGTGCTTCTGTTTTAGACTTGACAATGGTGATGACGCTGGTGGCAGCA---ACTTTGCCTGGTATGAGGGGCCCTATGACTGATGTGATGG--------------------------GGCCCCTGGCAGCTGCCACTGGACTGCGGGCCACAGTTCTAGCAAAACTCTGGAGAGCCTCGTATTTGGAGCGCAGAACATCAAGCTCCACTTTCATGCTGGCATTCTCAGAGGCGAGCTTCTCCACCTCCTGCTGAAGCTCTGCCTTCTGTTTCTCCAGCTCCTCCTTCTGAGTGACACGTTTGACGCGGCAGCT a score=255526.0 s hg17.chr17_random 1980190 166 + 2618010 GGCAGCGTAGCCGCGGTTCTTGAGCGTGCGCCGGCGCTGNCTTCAGCTGGACGATCTCCTCCTTGGACAGGCCCCGCAGGTGCTGGTTCAGCTCCCGCACCGACATGGTCACCAGCTCCTCATCCGTCAGGCTGGTGCCATTCTCACCCGGCTCCCGCTTCACCTG s mm5.chr11 120300703 165 + 121648857 GGCCGCGTAGCCCCGGTTCTTCAGTGTGCGCCTCCGCTG-CTTCAGCTGGATGATCTCTTCCTTGGAGAGGCCTCGCAGGTGCTGGTTCAACTCTCGCACCGACATGGTTACCAGCTCCTCGTCGGTCAAGCTGGTGCCATTCTCGCCTGGCTCCCGCTTCACCTG s rn3.chr10 110035478 165 + 110733352 GGCTGCGTAGCCTCGGTTCTTGAGTGTGCGCCGGCGCTG-CTTCAGCTGGATAATCTCTTCCTTGGATAGGCCTCGCAGGTGCTGGTTCAACTCTCGCACCGACATGGTCACCAGCTCCTCATCAGTCAAGCTGGTGCCATTCTCGCCTGGCTCCCGCTTCACCTG s canFam1.chr18 30419050 165 + 66173745 GGCAGCGTAGCCGCGGTTCTTGAGCGTGCGCCGGCGCTG-CTTCAGCTGGATGATCTCCTCCTTGGACAGGCCTCGCAGGTGCTGGTTGAGCTCCCGCACCGACATGGTCACCAGCTCCTCGTCGGTCAGGCTGGTGCCATTCTCTCCCGGCTCCCGCTTCACCTG s galGal2.chr3_random 681253 165 + 1636275 GGCCGCGTAGCCTCGGTTCTTCAGCGTGCGCCGACGCTG-CTTCAGCTGAATGATCTCCTCCTTGGACAGGCCCCGCAGATGCTGGTTCAGCTCCCGCACAGACATGGTCACCAGCTCCTCGTCTGTCAGGCTGGTCCCATTCTCGCCTGGCTCCCGCTTCACCTG s fr1.chrUn 148497132 165 + 349519338 GGCGGCGTAGCCCCGGTTCTTCAAGGTGCGCCTCCGCTG-CTTGAGCTGCAGGATCTCCTCTTTAGTGAGCCCCCGGAGGTGCTGGTTCAGCTCCCGCACCGACATGGTGACCAGCTCCTCGTCCGTGAGGCTGGTGCCATTCTCCCCCGGCTCACGCTTCACCTG s danRer1.chrUn 154830953 165 - 367113659 GGCAGCATAGCCCCGGTTCTTAAGTGTGCGTCTCCTCTG-TTTCAACTGCAGGATTTCATCTTTGGTCAGACCACGCAAGTGCTGATTCAGCTCTCGCACAGACATGGACACCAGCTCATCATCTGTAAGACTCGTGCCATTCTCACCTGGCTCTCGCTTCACCTG a score=-9839.0 s hg17.chr17_random 1980356 83 + 2618010 G---GGC-ACAGTGCAGGTGGTCACAGGCCAAGCGGGCACGCCCA---CTGTGCCCC------CCGACCCCAGCCCACAGGCTCCTGTCCCTGCCC s mm5.chr11 120300868 72 + 121648857 GAGTGGC-ACAGCACACAGGGTCAT-GGCAGAGTAGGCATGCCCAGCCCGACGCACC------CCAAGCCCAG----------------CCTCTCT s rn3.chr10 110035643 72 + 110733352 GAGTGGC-ACAGCACACGGGGTCAA-GGCAGAGTAGGAATGCCCAGCCCAGCACACC------CCGAGCCCAG----------------CCTCTCC s canFam1.chr18 30419215 84 + 66173745 GGGGAGCGACAGGGCGTGAGGTGGG-GGCGGAGGGGGGACGCCCACCCCGGTGCTCC------CCGGCTCCAG-----ACGCCGCCCCCTCTGTCC s galGal2.chr3_random 681418 69 + 1636275 TGAGAAG-AGAA--------------GGCGGCGTG--------CAGTCTGAAGCCTCGAGCAGCCGCCCGCAA----CCCTGTCCTCCACCTGCTG s fr1.chrUn 148497297 71 + 349519338 CAGGGGC-GGAC--------------AGGTGAG-AGGCAGGCACA---CATCGTCTC------AAGTCCACGGACAAATGTCCAGAATGTCCCCTT a score=69697.0 s hg17.chr17_random 1980439 52 + 2618010 ACTCACCTTCAAGGCCTTGTTTCCTTTATTGGGGGTCGTCATAACCCGGGGG s mm5.chr11 120300940 52 + 121648857 ACTCACCTTTAAGGCCTTGTTTCCTTTATTGGGGGTCGTCATAACCCGGGGG s rn3.chr10 110035715 52 + 110733352 ACTCACCTTTAAGGCCTTGTTTCCTTTATTGGGGGTCGTCATAACCCGGGGG s canFam1.chr18 30419299 52 + 66173745 GCTCACCTTCAAGGCTTTGTTTCCTTTATTGGGGGTCGTCATAACCCGGGGG s galGal2.chr3_random 681487 52 + 1636275 CTTTACCTTCAAGGCCTTGTTTCCTTTGTTGGGGGTCGTCATAACACGGCAG s fr1.chrUn 148497368 52 + 349519338 CCTTACCTTCAAGGCTTTATTTCCTTTATTAGTCGTCGTCATGCCACAAGAG s danRer1.chrUn 154833572 52 - 367113659 ACATACCTTCAGTGCTTTGTTTGCCTTGTTTGTAGTAGTCATACCACAAATG a score=100.0 s hg17.chr17_random 1980491 1 + 2618010 C s danRer1.chrUn 154833624 1 - 367113659 C a score=69311.0 s hg17.chr17_random 1980491 544 + 2618010 -CACAGCGAGCAGGCGCTCTCTGCAAGACACGGAGC--AGGTCAGTACCCTGGAGACCACCCTNNGCNNGCANNCCCCCCCCCCCCNGCCCCCGGNNCAGTTC---ACAAGAGCCCTTGCCGCACAGCCCGCCCCAGCCTGCTGTCCAGGTGCCCAGCC-----CCCAATACCTGATAGGAGGCAGC--CCTTGGCCTCTCCCNAGG--------------CTGGGCTGAGCTGCTTCNCT--GTCCACCCTGCCCCTAGAGAACCAGGTGGG--AGGTCAGGAAGGTCTG------ACGGGAGAAGGGGAACTGAAGGCTGTTAGGAA--GGCAGGCGCAAGACAAGGGGCA-GGGGAGAGATTAGAAGGAATAAGACGCGGGAGAGGCAGGCCTAGAAGGAAGCCGGGAGCTTTAAAAATAACCCCGGCAC-TG--------CCCAGAGCGCGGCTGTTCCTGGCGAGTCACGCTGACTCAGCACATT----GCCTCTGC-CTCCCCGCCGCGCCCGCACTCCCTGGCCC-------GCCAGCCAACAGCGCCCCACGAGAGCCGCAGCCCCCAGCCTGGCCA---ATAGCAGGTGAGGGCCAGCC s mm5.chr11 120300992 458 + 121648857 ACACAGTGAGCAGGCA--CTCTGCAAGACACAGAGCATAGGTCAGGACCCT-GAGACT----------------CTTTTACACCCCA-------------------ACAGGA-----------------------AGCTTGCTG-CCTGGTGCTCAGCC-----CACAGAA------------------CCTTGCCCCTCACCTGAC--------------CTGAGCTTGGCTGCTTCA----GAAGGCCCTGTCCCTAGAGAGCCAGGTGGG--AGGTCGGGAGATTTTT-TTCCCAGGGAAGAAGCAGGAGCAA-------TGTGAA--GGCAG----AAGACAAAGGGAGCAGAGAGAGATTAGAAGGTCTGGGCTGCAGGAGGGGCAAGCCTAGAAGGAAGCT--GAGCTTTAAAAATAACCCCAGTGC-TGC-------CCCAGAGCGC-CCTGTTCCTGGCGAGTCATGCTGACTCAGCGGATC----GCCTC--C-CTCCCTTCCTGAGCCGTTCTCCCGGTCCTTTG----GCCAGCCAGCAGTTCCCCAGGAGACCCACTAC------TGGGACCA---ACAGCAAGCAAGGATCAGCC s rn3.chr10 110035767 456 + 110733352 ACACAGTGAGCAGGCA--CTCTGCAAGACACAGAGCAGAGATCAGGACCCT-GAGA------------------CTCTTACACCCCA-------------------AAGGGA-----------------------AGCTTGCTG-CCTAGTGCTCAGCC-----CACAGAA------------------CCCTG-CCCTCACCTGAC--------------CTGAGCTTGGCTGCTTCA----GAAGGCCCTTTCCCTAGAGAGCCAGGTGGG--AGGTCGGGGAGATTTTTTTCCCAGGGAAGAAGCAGCAGCGA-------TGTGAA--GGCAG----AAGACAAAGGGAGCAGAGAGAGATTAGAAGGTCTGGGCTGCAGGAGGGGCAAGCCTAGAAGGAAGCT--GAGCTTTAAAAATAACCCCAGTGC-TGC-------CCCAGAGCGC-CCTGTTCCTGGCGAGTCATGCTGACTCAGCGTATC----ACCTC--C-CTCCCTTCCTGAGCTGTTCTCCCGTTCCTCTG----GCCAGCCAGCAGTTCCCCAGGAGACCCACTAC------TGGGACCA---GCAGCAAGCAAGGGTCAGTC s canFam1.chr18 30419351 480 + 66173745 -CACGGCAAGCAGGCA--CTCTGCGGGACAGGGAGCAGAGGTCAGGACCCCACAGCCCACTCTC----------CTCTCCCTCCCCAGGCC---------------GCAGAG------------------CCCCCAGCCT--CG-CCTCTCACCTGACCATT--CCCGATACCTGGCCCAGAGGACC--ACCTG-CCACCCTCTG--------------------GCTAGGCTGCTCCCC---GTGCACCTTGTGCCCAG-GAACCCAGTGGGCCAGATCAGGGG------------AGGGAAACTGAATGAACGG---CTGTTAGAGAACGGCAGAGACTAGAAAAGGGCCTCGGGAAGAGA-TGGAAGG-----GATGCAGGAGGGGCCAGCCTAGAAGGAAGCCGGGAGCTTTAAAAATAACCCCAGTGTGCGC-------CCCAGAGCATGGCTGTTCCTGGCGAGTCACGCTGACTCAGCACATC----GCTCC--CGCTCCCTCACCAGCCTGGCCTGGCGCTCCCCAGGGCTGCCAGCCAGCACAGCCC--GGGGACCCGCAGC------CTGGGCAG---AGCGCTGCTGGG-----GCC s galGal2.chr3_random 681539 478 + 1636275 CCACGTCAGTCAGG----CTCTGGAAGGGAAGGAAGTCAGGTTAGT-CCCT-GGGT-----------------------------------------TGGTTCTCAGCAGAG------CCAGCATGGAGCCCCGCAGCAA--CA-CCCTGCGCCGGGGCACTGCCACTGCCCTCCGCAGGCAGCGCTCAGCCTG-ACTGCATCGGACTCACAGTGCAGCAACTGAGCAAAACTGCTGCCCTTCCACAGCCCTACGACCAC-----------GG------------------------AGAGTTGTAGCAATGCTGTTTTTTGTTGGGGA--G--------TGGAGGGGGG----GGGGAAATATTAAAAAACG--------AGGAGGAGCCAGAATACACGGAAGCC-ACATTTGTAAAAATAGCCTGGCAGC-AGCAGCCAGGTCTGGAGCACGCCTGCTCGGGGCCAGTCACGCTGACTCAGCATGCCGGCAGCCCGCGC-CTCTGCTCCCAGCCGCATCCCCACAGCCCCTG----AGCA--CAGCACAGCCCCAC-ACACCCGCAGC------CCAGCACAGCCACAGCTGCCCAGAGCGAGTC a score=68972.0 s hg17.chr17_random 1981035 807 + 2618010 AGTGACCCTGTGTGTGCATCTTCCAGNGGTCCTACCTTCTACAGCCACCTCCCCTGAGCCGGCCTCGGACA----AAGCCCCCTGCTCCCTGGGTGCACAGGGGCCCCACGGGGGACCT-GGCCAGAGAGGAGGCTACAGGGAACCCCGAGTCTCCCAGCCTCCTAACTTTGAAAAGCNTGGGGGTGGGCCGTCCATCTAGCTCTGGTCTGTTGGCAGGACTGACCAGGGAGTTCCCCCACCTTCCAGGTGGCAGGCCAT-CAGCTGGGAGGAGCCTGGCCCGAGGCCCCTCTAGACCTCCCAGTCGGCCTCCTCCA-CTGATGGAGTAACCATCCTGTGGCTTTGGGTTGCAGGNAAGCAGCC------CCTGCCCCACCCCATCCAGGGTATTTCACAAGGGNCTCCCACAGTGAGC----------CACCCCGGGCCTGCCCAACGTGAAGGCTGGC-GG----AGTCAGCCCCTCCGAGCTGCAGCCTGCTCTCTGG-TCCCTGCCNCCGGGTGAGTGCCCACAGGGCCAGGGAGCAAAAACAAAAGTGCTGGGGTGGCCGGACTTAACAACCAACTCTTCCCCA-------CTCGGG-GTCCCTCCAGCACTC---------TGCTCTCACTTTCTTGNCTAAGGATGTTT--------------CTGGGATTCCCAGCTCAGCCCAGCTCCCACCAGACCCTTGGGCATGGACCCCCGCCTCATGCTCCATCCCCCACTTTCCAGGTTTGATGCAG-----ACAGATGG-----------GAGA-----------------CTCCTCCAGA------GGAGCTAGGATCACTTCAGGAAATTATG----GGCTGGGGGGCTTCTTACTCTCATCAGGGGAGCTGAAGTGTG-GCCAGGCGGATGC---- s mm5.chr11 120301450 705 + 121648857 AGGGACCCTGTA--------TTCCAA-GGTCCTACTTCCCATA--TATGTTCCCTAAGCTGGCCCAGGACAAAAGAAAGCCCTTTCTCCCT---------------CTA----GGACTT-----AGGTAGGAGGTTG---------------CTTCCTGCCTC--AGTCTGGCAGAGGATAAGGTTTGT-------TCTAACT---------------GGCTGACT-GGGAATCCTCTCACCTTCCAGGTAGCAGGCAATCCGGCTGGGAGGAGCTGAGCCC-AGGCCCCTCCAGTCCTCCCCGTCCATCTCCTTTA-CAGATGGGGTAACCATCCTGTGGCTT--GGTTGC-----AGCATCCTGTACTCTTGCCCCACCCGACACAGGGTGTTTCACAAGGG-CTCCCACAATTAGCAGAGGAAGAGCACTGTTAGC----------TGGAAGCAGGCAAG----AGCCAGCCCCTTCAGGTCACTGACTGGTCTTTGGCTCTCTGCC-TAGGGTCAGTGACCACAGGGCCAGGGAACAAAAGCAAAACAG-------GTCCCTCCT--ACAGTCAGCCGCCCCTC----------CGGG-CTCAACCTCATTTTC---------AGCTTTCTAAAGCCTTGCCAAGGACATTC-TTGTGTACCTAGGCTGGGAATCCCCACTTAGCCCAACACCCACCAGTCCCACAGGCA--------------------CATCCTCTCCTTTCCAGGTTAGGTGCAG-----GGAAATGA--GG--GAAGTGAGG-----------------TTGCTGCA---------GGTCTGTGAGCACTTCAGGCAAAAATGTGCTGGATGGGGAGTTGGTTCATCTTATCAAAGGAACTA------------------------- s rn3.chr10 110036223 731 + 110733352 AGGGACCTTGTA--------TTCCAA-GGTCCTACTTCCCAAA--CATGTTCCCTAAGCTGGCCCAGGACAAAAGAAAGCCCTTTCTCCCT---------------CTA----GGACTT---------AGGAGGTTG---------------CTTCCTGCCTC--ATTCTGGCAGAGGACCAGGTTTGT-------------TCTAACT---------GGCTGACT-AGGAATCCTCTCACCTTCCAGGTAGCAGGCAATCCGGCTGGGAGGAGCTGAGCCC-AGGCCCCTCCAGTCCTCCCTGTGCATCTCCTTTA-CAGATGGGGTAACCATTCTGTGGCTT--GGTTGC-----AGCATCCTGTACTCTTGCCCCACCCGACACAGGGTGTTTCACAAGGG-CTCCCACAATTAGCAGAGGAAGAGCACTGTTAGC----------TGGAAGCAGGCAAGAGCCAGCCAGCCCCTTTGGGTCACTGACTGGTCTTTGGCTCTCTGCC-TAGGGTCAATGACCACAGGGCCAGGGAACAAAAGCAAAACAG-------CTACCTCCT--ACAG-----------TCAGCGGCCCCTCTGGGCTCAATCTCAT-TTC---------AGCCTTCTGAAGCCTTGCCAAGGACATTTTTTGTATACCTAGGCTGGGAATCCCCACTTGGCCCAACACCCACCAGTCCCACGGGTAGAGA---------------------------TGCAGGGAATGAGGAAGGACCTGCAGGTGA--GGTTGCCGAAGGT-----------------CTCTTTCAGAAGGCTGAAGGCTGTGAGCACTTCAGGCAAAACTGTGCTGGGTGGAGAG----TTCATCTTATCAAAGGAAAGGATGTGTGAGCCAGGGCAGCAC---- s canFam1.chr18 30419831 757 + 66173745 AGTGCCCCCACACCTGTGCACTCCAG-GGCCCGACTTCCGACAGCCCCCTCCCTTTAGCTGCCCTGGTACG----GGGGTCCT---------GGGGGGGGGGGTTCCCGTGAAGGCCTCGGGGCCAAGACGAGGATGCAGGCGAGTCAGA--CTTTTCACTTT--------GAAGAGCTTGACCGTCCT---------CAGCATTGGT----------GGGAGCCC------CCCCCTCCACCCCCAGGTGGCAGGCACCCCAGC----AGAGGCTGGGCTC-AGCCC-------------------ACCTCCGCTGCCTGGTGGAGCAACCTTCCTGTGGCTTTGGATTGC-----GGCATCTTGTGCCCCTGCCCCACCCCATCACTGCTATTTCCTAACAG-TGCC--CGGTTAGC----------CACC-CAACC----------GGGGGACCCGC---------TCAGCCTCCTCCAGCC----------CTCC---CCCCCACC-AGGGGTCAATGCCCACA-GCTCAGAGAACAACAAAAGGACTG---GGGGGTGCAGACC--AAAG-----GGCCCCCTCGCAGCCATTCAGTTGCCTTTCCCATACCCGGCCCTCAATGCTTTCTCAAGCCCTGCCAAGGACATTT-CTGTGCACCTAATCCTGCAATTCTGGCCCAGCCAGCCCCCCACCAAACCCTTAAACAAGGA----CGCTTCCCTCTCAAACCCCTACTTGCCAGGTTTGGCACAG-----AAAGGTAAGTGGCTGGAGAAAAAGAAGGACCGTGGTCTCCCTGCTGCAGG-------AGGTCACAAGCTCTGCAGGTAGCCCTG----GGCTGGGGGCTTTCTCACCCTCA-CTGGGGAGATACAGCACAGGTGGGGGAGGTGGAAGT a score=1186.0 s hg17.chr17_random 1981835 7 + 2618010 CGGATGC s panTro1.chr19 81240500 7 + 82489036 CGGATGC s rn3.chr10 110036947 5 + 110733352 --GCAGC s canFam1.chr18 30420581 7 + 66173745 TGGAAGT a score=8198.0 s hg17.chr17_random 1981842 62 + 2618010 ACACATCCTCACCAGGCTCAAGACTCCACCTCACCCNAGCCTGGGA------CCAGGAGGTGAGGC----TG s panTro1.chr19 81240507 61 + 82489036 ACACATCCTCACCAGGCTCAAGACTCCACCTCACCC-AGCCTTGGA------CCAGGAGGTGAGGC----TG s mm5.chr11 120302155 61 + 121648857 ACACATTCTCATTAGCTTT---ACCCTACTGCTTTT-AGCTTTGAA-------CAGGAGGTGTGGCTACATG s rn3.chr10 110036954 60 + 110733352 TAGTGTTCTCATTAGCCTT----TCCTACCACTCTT-AGCCTTGAA-------CAGGAGGTGTGGCTACACG s canFam1.chr18 30420588 61 + 66173745 GCAAAGCGGCTTCAGGGTACAGCGGCCACCTCACCT-AGCCCCGTCCTAGTCCCGGGACGTG---------- a score=5462.0 s hg17.chr17_random 1981904 46 + 2618010 CAAGCACAGAGCAGGGAGGGGAGGCCAGAGACCCCTCCCCACAGCC s panTro1.chr19 81240568 46 + 82489036 CAAGCACAGAGCAGGGAGGGGAGGCCAGAGACCCCTCCCCACAGCC s mm5.chr11 120302216 37 + 121648857 CAAACACTGAGCAAGCAAACCAGGACTAAA-------TCTACAG-- s rn3.chr10 110037014 45 + 110733352 CAAACATTAAGCAAGCATG-GAAGCCAGAGAGACTTCTACAAGGGT s canFam1.chr18 30420649 13 + 66173745 ---------------------------------CCTCACCACAGCC s galGal2.chr14 15821805 44 - 20603938 CGAGGACAGGGCAGGGAGGGAAGGACATGG--CTCACGCCGCAGCC a score=88271.0 s hg17.chr17_random 1981950 400 + 2618010 ANAGCC------AGCTCAGAGGCAAGGTCCCGAGGCTCCAGCCACTGGATTCTTCCAGATAAAGGATGGGGAANGACCT--GAGCTG-GAGGTCAGAAGGCCCACAGGAGCCCTTTCCTACACGTCCGGCACAACACTGCCCCAGGAGACAGGCCCTCAGCCAAGCATGGAGGGGCCCCCCAGNCCTTGAGTGCAAGTCAGGGTGCAGAGACACT-----------------------------------GCCCTGGCACCANGCTTCTNCCCACCCCCNA---TCGCCCCCACCCCTGCTGCTAAGCACAATGACAGTGGTGACTTCCTGAAGAGATCACACG------------------------------------------GAAAAGTGCCTCCTCGACAGATTTTGCCCTCCGCAGAAGGCCTGAACTCAGCACANAGTGCAAGNCCATCGNCCTCCNTATCAAANGGTGN---------CGNCCNGGGGGG s panTro1.chr19 81240614 387 + 82489036 A-AGCC------AGCTCAGAGGCAAGGTCCCGAGGCTCCAGCCACTGGATTCTTCCAGATAAAGGATGGGGAA-GACCT--GAGCTG-GAGGTCAGAAGGCCCACAGGAGCCCTTTCCTACACGTCCGGCACAACACTGCCCCAGGAGACAGGCCCTCAGCCAAGCATGGAGGGGCCCCCCAG-CCTTGAGTGCAAGTCAGGGTGCAGAGACACT-----------------------------------GCCCTGGCACCA-GCTTCT-CCCACCCCC-A---TCGCCCCCACCCCTGCTGCTAAGCACAATGACAGTGGTGACTTCCTGAAGAGATCACACA------------------------------------------GAAAAGTGCCTCCTCAACAGATTTTGCCCTCCGCAGAAGGCCTGAACTCAGCACA-AGTGCAAG-CCATCG-CCTCC-TATCAAA-GGTGC-----------GCCGGGGGGG s mm5.chr11 120302253 340 + 121648857 --GACT------AGATTAGGAGC-ATTTTCAGAGGCAACAG--------TACTGCTAGATCAAAGAGAAAGGCAGAACTCAGATCTA-GAGGTCTGAAGGGCATCTG----TCTTTCTTACAAGT-TGGCCCTATACT-------------------------------------CACACTAG-----GAGCATAAGTCGAGGTGAGGGGACA-------------------------------------GTCCTGGCAGGA-GCTTCC--------------------CTTATACAGACTGCTGAGCTCAA----AACGGTGACTTCCT---GAGATCGCACAGGAAAGT------------GCAGAGTGTGGCGGCTGGGAGCTGAAAAGTGCCTTCTCAACAGATTTTA-CCTCCACCAAAGGCCTGAACTCAGCACA-AGTGCAGC-CAACTG-CCTCCTGATCAAA-GGTGC-----------ACGAGAGAGA s rn3.chr10 110037059 352 + 110733352 --AAAT------AAATTACGAGC-ATTTTCAGAGGCCACAG--------TCCTGCTAGATCAAAGAGAAAGGCAGAACTCAGATGTGAGAGGTCTGAAGGGCATCTGTCTGTCTTTCTTACAAGT-TGGCCCTATAC-----------------------CCA------------CACACTAG-----GAGTGTGAGTCA-GGTGAGGGGACA-------------------------------------GCCTTAGCAGGA-GCTTCC--------------------CTTACGCATACTGCTGAGCTCAA-AATGGTGGTGACTTCCT---GAGATCGCAAAGAAAAGTGCAGAGTGTGGCG------------GCTGGGAGCTAAAAAGTGCCTCCTCAACAGATTTTACCCTCTGCTAAAGGCCTGAACTCAGCACT-AGTGCAGC-CAATTG-CCTCCTGATCAAA-GGTGT---------GTGCATGTGTGC s canFam1.chr18 30420662 419 + 66173745 G-GGTTCCCCAGGGCTCTGAGGC-AGACCCTGAGGCT--GGTCCCATGGCTGTTCCAGAGCAGAGGATGGAGAAGACAC--CAGCTG-GAGGCCAGAAGATCCCCAG--------------------AGCCCCAGACCCACCCAGG-------------------------GGGCTCCCCCAG-CCTCGAGTCTGAGTCAGGGTACAGGGACACTCCCCTGGGTCTAACCGTTGTCAGCCCAAAGGAACAGCCCAAGCACCA-GCTTTT-CCCGCCAGCCATCCTCCCTCCACCCCCGAATGCTGAGCACAA------CGGTGACTTCCTGAAGAGATCACACAGAGAAGT------------GCCGAGTGTGGCGGCTGGAAGCTGAAAAGTGCCTCCTCGACAGATTTCACCCTCTGCAGAAGGCCTGAACTCAGCACA-AGTGCAGC-CACTCG-CCTCCTAATCAAA-GGTGTAGCGTGTGTCTGCGTGTGG-- a score=26749.0 s hg17.chr17_random 1982350 112 + 2618010 TGGGGGNNAGGGGCAGNCCCTGAGCACAGCCAGTGCGTTCCAGGCTCCTGGCCTGGCCTCTG--GACCTGGGC----------------------------NTGAGAGGGACC----------------------------------ATGCAGGGATCCCAGG-------AGCTGGACTGAGG s panTro1.chr19 81241001 108 + 82489036 TGGGGG--AGGGGCAG-CCCTGAGCACAGCCAGTGCGTTCCAGGCTCCTGGCCTGGCCTCTG--GACCTGGGC-----------------------------TGAGAGGGACC----------------------------------ATGCAGGGATCCCAGG-------AGCTGGACTGAGG s mm5.chr11 120302714 115 + 121648857 AGGGGG--AAGGGCAG-GTCTCAGGAAAGCCAATTC-TTCCA-GCTACCTGCCTGGCTTCTGCAAACCTAGGG-----------------------------ACACAGTGACT----------------------------------AGGCAGACAGTTCTGGGGGGGACAGCTGTGCTGAGG s rn3.chr10 110037465 115 + 110733352 GGGGGG--GAGGGCAG-ATCTCAGGAAAGACAGTGC-CTTCA-GCTACCTGCCTGGCTTCTGCAAGCCTAGGGA---------------------------CACACAGTGACT----------------------------------AGGCAGACAGTTTTGG--GGGACAGCTGTGCTGAGG s canFam1.chr18 30421081 172 + 66173745 TGGGGG--AGGGGCAG-GTCTCTGCAAAGCCTGTGC--TTCAGGCTCCTGACCAGGCCTCTGCCCACCTGGGACACACACAGGTGTGACAGTGATAGCCTTTGGGGAGGGACTGTTAGAGACAGCTCAGGGTACCCCTAGAAGCCAAAGAAAGGGTACCCGGG------AGGCCGGATTAAGG a score=4446.0 s hg17.chr17_random 1982462 36 + 2618010 AGAAGCTGCCCCCGCCCTCCTCCAGCCCTCAAGGCT s panTro1.chr19 81241109 36 + 82489036 AGAAGCTGCCCCCGCCCTCCTCCAGCCCTCAAGGCT s rn3.chr10 110037580 34 + 110733352 -GATACAG-TTCAGAGATCTTCCAGAGCCTGAGGAA s canFam1.chr18 30421253 33 + 66173745 AGAAGC---TTCTGCTTTTCCCCCGTCCCACAGGCT a score=0.0 s hg17.chr17_random 1982498 15 + 2618010 GGGCAGAGCTGGGGC a score=735.0 s hg17.chr17_random 1982498 11 + 2618010 GG---GCAGAGCTG s panTro1.chr19 81241145 11 + 82489036 GG---CCAGAGCTG s rn3.chr10 110037614 14 + 110733352 GAAGCTCAGAGTGG a score=400.0 s hg17.chr17_random 1982509 4 + 2618010 GGGC s panTro1.chr19 81241156 4 + 82489036 GGGC a score=0.0 s hg17.chr17_random 1982509 4 + 2618010 GGGC a score=39617.0 s hg17.chr17_random 1982513 317 + 2618010 CTGTCATGCACCCTCTGCTCCCA-------GAGGCTAATAAGCCCACCTC---ACGCAGGAGGCACAGATGGTC---ACGGCTCCGCAACCTGCGAGGGTACCTAGGCCACCCATTCACACTGAGAGCCA---GGAAAGGGAGG---GAGATTTGGGAGCTCCGTCTCCT--TTGG--CTAAAGTAGAAACTCCCG-----TGCCTGAACACAGACAG---------CCC--CACCTGG-----------CTGCAAAGCCCAGCGGCC--GAAACTC--CCCGGCAGTCAT-GGCCTCTGCTCCATAAGCTCTCAGCTCCTGANAAGTCACTCTTTGAACAGAACCTAAAACTTAGTTTCCACTGATGCATA s panTro1.chr19 81241160 318 + 82489036 CTGTCATGCACCCTCTGCTCCCA-----CAGAGGCTAATAAGCCCACCTC---ACGCAGGAGGCACAGATGGTC---ACGGCTCCGCAACCTGCGAGGGTACCTAGGCCACCCATTCACACTGAGAGCCA---GGAAAGGGAGG---GAGATTTGGGAGCTCCGTCTCCT--TTGG--CTAAAGTAGAAACTCCCG-----TGCCTGAACACAGACAG---------CCC--CACCTGG-----------CTGCAAAGCCCAGCGGCC--GAAACTC--CCCGGCAGTCAT-GGCCTCTGCTCCATAAGCTCTCAGCTCCTGA-AAGTCACTCTTTGAACAGAACCTAAAACTTAGTTTCCACTGATGCATA s mm5.chr11 120302878 298 + 121648857 CTGATCTGGACCTGCTGCCTCCA------------------ACTCAGCCC---TCCAAGTACTCACAGTTATGG---ACAGACTCAAGACAC-CAAGGGGCTCTGGACCACTCATTCAGGCTGA---CCC---TTAAA--GAAG---GGGTTTGGGCACCTCTGTCCTCT---------CACACTAGACAATCTGGACATTAGTCTCAAGCAAGATAGT------GACCC--TTCCTTGCTAAACCTTGCCTGTAAACCTCAATGCAG--GAGACCC--CCTA-----CGTAGGTCTTCTCTCC-------TTCAGGTACTGA-----CATTGTTTGAAGAGAACGGAAAACATTAAGTTCACTGAAGCACA s rn3.chr10 110037628 311 + 110733352 CTGATCTGGACCTGCTGCCTTCC---------AACAACTCAGCCCTCCTCCAAGTCCTTCACTCACTGTGATAG---ACGGTCTCAAGACAT-CAAGGGACTCTGGACCACCCATTCAGGCTAA----CA---GAAAA--GAAA---AGGTTTGGGCA--TCTGTCCTCT---------CACAATGGGTAAGCTGGACATTGGCCTCAAGCAAGACAGT----GAGACCC--TTTCTTGCTCAATCTTGCCTGTAAACTTCAATGCAGGAGAGACCC--CCAG-----CTTAGGTCTTCCCTCC-------TTCAGATATTGG-----CAGTATTTGAAAGGGACTTAAAATGTTAAGTTCACTGAAGCATA s canFam1.chr18 30421286 347 + 66173745 CTGTCATCCTTCC-CCGCTCCCCTTCCCCAGAGGCTG----AGCCACCTC---GTAGAGAGGGCTCGGGTGGTCCCAACAGCCTGGAATCCC-CAGGGTATGCTGGGCCACCTCCTCAGGCTGACAGCCAGCTGGGAAGGGAAAAACGGGTTCAAACAGTGCCACCCCTTACCTGGGCCCAAACCAGG--ATGTGGACAGGTGGCAAGAGCAACACAGCCAGCCAGCCCCTGCTCCTGG-----GCCTGGCCCCAAATTCTAGTGGCC--TCAACCTAGCCTGGCCTTCAC---CACCTCCTCCGAGATCCCCCAGCCGCTGA-AAGCCATTC--TGGAAAAAGCCAACGACTCAATTTCCACT-AAGAATA a score=1869.0 s hg17.chr17_random 1982830 28 + 2618010 AGTGANCTGAGAAGATGTACATAAATGG s panTro1.chr19 81241478 27 + 82489036 AGTGA-CTGAGAAGATGTACATAAATGg s canFam1.chr18 30421633 23 + 66173745 -----AAGAAGAAGACTTAGAAAACCAG a score=24762.0 s hg17.chr17_random 1982858 318 + 2618010 GCCg--cgcggtggctcacacctgtaatcccaacanctttggganggccgagngtgggtgngattacgaggtcaggagatcgagaccatcctggctaacacggtngaaaccccgntctctactaaaaatacaaaaaaatagccgggcgtcgtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggagaacggcgtgaacctgggaggcagagcttgcagtgagctgagatcgcgccactgcactccagcctgggcaaaagagtgagactccgtctcaaaaaaaaaaaaaaaaaaagaTGTACATAAATGT s panTro1.chr19 81241505 311 + 82489036 gccgggtgcggtggctcatgcctgtaatcccagca-ctttggga-ggccgag-gtgggtg-gatcacgaggtcaggagatcaagaccatcctggctaacacggt-gaaaccccg-tctctactaaaagtacaaaaaattagccgggcgtcgtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggagaacggcgtgaacccgggaggcagagcttgcagtgagctgagatcgcgccactgcactccagcctgggcaaaagagcgagactccgtctcaaaaaaaaaaaaaaaa---GATGTACATAAATGT a score=2835.0 s hg17.chr17_random 1983176 17 + 2618010 CCCTCCAGGACCCCAAA s panTro1.chr19 81241816 17 + 82489036 CCCTCCAGGACCCCGAA s canFam1.chr18 30421656 17 + 66173745 CCCTTCGGGAATCTGCA a score=0.0 s hg17.chr17_random 1983193 4 + 2618010 ANTT a score=-248.0 s hg17.chr17_random 1983193 3 + 2618010 ANT s panTro1.chr19 81241833 2 + 82489036 A-T a score=546.0 s hg17.chr17_random 1983196 1 + 2618010 T s panTro1.chr19 81241835 1 + 82489036 T s mm5.chr11 120303214 1 + 121648857 T s rn3.chr10 110037977 1 + 110733352 T a score=176918.0 s hg17.chr17_random 1983197 911 + 2618010 TTCCCAGGGCATCAAACT----CCAGGCCAACGGTCAGCTAAAACATTGAAACATCTGGAATCTATAAGCCCCGGGGCTCACTGAGAGTGGANCCTGTGTTCTGTGTGTATGTGTGGGGGGTGCTCACTGAGAATGGACCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg---GCGGGGGGCGGGGGGCATCC-CTGAGGGCAAACCACAAAGTAGCCTAACCC-AGCCATGAAATGAAC----TCCTGGGCAAAGGNAAGT---------CAACCTTCGTGAATC-TCCAC-----ATACCCAAGGAAAGGTGGCTCTGGCCACATCACTCCCAAGCTGCCACTTTCTAAGCGTCCTGGGCTGCCAGGCCAGACACCCAACAGGGC---CACTCCCTTTGCTAAC-TTCACACAACGCTGAGACCCCA----CTTCAGGTAGCGACAACTTTAGGGTGGCTGGGTGCTGCGT-TCTGCCACCCTGTGCCATCCACACCAGCCCATCTGCTGCACCCCAAGGCTAGGCACCCT--GAAGCTCCCACCACCTACA--GTCTCAACCCAGACTCCAGGGCCAACTGGGGAGAGAGGCTGGG-CTGCT---------------------------------------TCCTCCCCTTTGCCGTTTCCTGGTAGAGCTGCCCCTGCTTCCTCCCTGCC-CAGCCCACTGTCACCCAGGGCTTGG-----TACACACACCCCTCTTTCTC--CCAGGACCTCGA--------------------TCTCTGGCCAGGGGCTGTCCAACC---------AGGCCAGTCCCAG----GGAAAGCCGACTTCCCCTTTG--GCTAGCTCGGCCCACCGAAGCTCCTCCCCTCCCTCACTCAGGGAACTATTTCCCAGTTTGGAAAACTGCTCCAGACTTGGGACCAGGACCAGCTGCCGGAAAAGAGCCGCCTGGGAAGGGGTGGAC-CGCCCGGGGCTTCACCTTTGACCCCGGGAGAACACCTGCA-GCGAGCCACCCCCAC s panTro1.chr19 81241836 911 + 82489036 TTCCCAGGGCATCAAACT----CCAGGCCAACGGTCAGCTAAAGCATTGAAACATCTGGAATCTATAAGCCCCGGGGCTCACTGAGAGTGGA-CCTGTGTTCTGTGTGTATGTGTGGGGGGTGCTCACTGAGAATGGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-tgGCGGGGGGCAGGGGGCATCC-CTGAGGGCAAACCACAAAGTGGCCTAACCC-AGCCATGAAATGAAC----TCCTGGGCAAAGG-AAGT---------CTACCTTCGTGAATC-TCCAC-----ATACCCAGGGAAAGGTGGCTCTGGCCACATCACTCCCAAGCTGCCACTTTCTAAGCGTCCTGGGCTGCCAGGCCAGACACCCAACAGGGC---CACTCCCTTTGCTAAC-TTCACACAACGCTGAGACCCCA----CTTCAGGTAGCGACAACTTTAGGGTGGCTGGGTGCTGCGT-TCTGCCACCCTGTGCCATCCACACCAGCCCATCTGCTGCACCCCAAGGCTAGGCACCCT--GAAGCTCCCACCACCTACA--GTCTCAACCCAGACTCCAGGGCCAACTGGGGAGAGAGGCTGGG-CTGCT---------------------------------------TCCTCCCCTTTGCCGTTTCCTGGTAGAGCTGCCCCTGCTTCCTCCCTGCC-CAGCCCACTGTCACCCAGGGCTTGG-----TACACACACCCCTCTTTCTC--CCAGGGCCTCGA--------------------TCTCTGGCCAGGGGCTGTCCAACC---------AGGCCAGTCCCAG----GGAAAGCCGACTTCCCCTTTG--GCTAGCTCGGCCCACCGAAGCTCCTCCCCTCCCTCACTCAGGGAACTATTTCCCAGTTTGGGAAACTGCTCCAGACTTGGGACCAGGACCAGCTGCCGGAAAAGAGCCGCCTGGGAAGGGGTGGAC-CGCCTGGGGCTTCACCTTTGACCCCGGGAGAACACCTGCA-GCGAGCCACCCCCAC s mm5.chr11 120303215 703 + 121648857 TTCATAGGG---CAAGTT----CCACACCAAATGAAA---AAAACACTG---CACCTATGAGC----AGCCTCAGGGCTC----AGGGTTAA---------------------------------------------------------------------------------------------GGGGACATCC-CTTAGCACAAACCACAAGGTA----AGCAC-AGTCTAGACATGAAT----CCCTGGGCAAGGA-AAGCAGT--AGGATGGAGTTCAAGAACC-TTCACGACAGATAAGTCAGTAAACAGCCATTCAGCCACACC-CCACAAAACTGTCACCTCCCAAGAGTCT------------CCAGACACCCAACAGGGCACACACACTTTTTGGTAAC-TCCAGGCAACAGTGGGACCCCAAACTCTTCTGAAAGGAATAACATTGGGATAAATAAA-ACTACA--TCTTCTACTCCATG--------------------GTTGCACCTCAA----------------AAACTCTCACCAGCT-----GCCTAGATCCACACTC------------------------------------------------------------------------TGCTCTCCTTAGCTG------GTTAGAGCTGCCCCAGCTTCTTTCAAGCCACAGACCCTTCTCCCCCTG----------------CCTCCCGGTCTTCCCCATCTAGGACC------------------------------GACGAAGCCTGGCCATTC---------AGG---GTCACAGAGAAGGAAAGCTTGCTTCCCAGACG-AGCTGGCTCGGCCCACCTAAGCTCCTCCCCT-CAGCGTACACCGATCGGTCTCCGGGTTTGGGGAACTGCCCCAGTTGTGGGACCCGGGCCAGGAGCCCAAGAA-------CCAGGCAAGGATGCGCACGCCCGGGGCTTTACCTTCCACCCCGGGAGAA-ACCTGCG-GCGCGCC-CCTGCAA s rn3.chr10 110037978 713 + 110733352 TTCACAGGGCATAAAGTT----CTACCCCCAATG------AAAACACTA---CACCTACAAGC----AGTTTCGAGGTTC----AGTGTGCT-----------------AAGTGTTGA-------------------------------------------------------------------GGGGACAACCTCTTAGCACAAACCACAAGGTA----AGCGTAAGTGTAGCCATGAAT----CCCTGAGCAAGGA-AAGCAATACAGAATAGAGTTCAAGAACC-TTCACAACTGATAAGTCGGTAAACAGCCATC-AGCCACACCCCACGCAAACTGTAACTTCCCAAGAGTCT------------CCAGACACCCAATATGGC--ACACACTTTTTGGTAAC-TTCAGGCAACAGTGGGACCCCAAACTCTTCTGAAAGGAATAACGCTGGGAAAAATAGA-ACTACA--CCT---------------------------------TCCACTCCATGGTT--GCACCTC--AAAATTCCCACCAGCT-----GCCTAGATCCACCCTT----------TGGGAA--------------------------------------------------------------CCTCAGCTG------GTTAGCGCTGCCCCAGCTTCTCTCAAGCCACACACCCTTCTT-CACTG----------------CCTCCCGGTCTCTTCCATCCAGGACC------------------------------GACGCAGCCTGGCCATTC---------AGG---GTCACTCAGAAGAAAAGCTTGCTTCCCAGACAGAGCTGGCTCGGCCCACCTAAGCTCCTCCCCT-CGGCGTACACCGATCCGTCTCCCAGTTTGGGGAACTGCCCCAGTTGTGGGACCCGGGCCAGGAGCCCAAGAG-------CCTGGGAGGGATGCGCAAGCCTGGGGCTTTACCTTCCACCCCGGGAGAA-ACCTGCG-GCGCGCC-CCTGTAA s canFam1.chr18 30421673 915 + 66173745 TTCCTCAGGTATAACATTGCCGCAGAAGGAAAGATCAGCTGAGGTGTTA-AACATCTGGCATCGATGAGCCC------------AAAGCTAA---------------gtatgcgtg------------------------tgtctgtgagtgcgcgcgtgtgtgtgtgtgGGGGGGGGGGGGGGGAGGGGGATCC-CTGAAGACAGACCACAAGGCC----GGCCA-GACCTAGCCATGAACCACACCCCCGCCCCTGG-AGGC----------------CAGGAGCCATCCAC--------AGTCAGGAAAGGTAGCCCAGGCCACACCACCCTCAGGCTGCCCCCTCCCAAT-----------------CCCGACACTCACCGGGGC---CACAGTCTTCACTAACACCCACACAGCACGGAG--CCCA----GCCTGGAGGGGGACAGCTCTGGGGTGATGGGGAGCGGAGTGCCTTCCGC---GTGCCTCCCACACCAGCCCACCGGCTGTGCCCCAGGACCAGGCGCCCTCGGCTGTGGCCGCCACCTGCAGGGCTTGGACCCAAACCCCAAGGCCAGTCTGCCAAAGGGGCAGGGCCTGCTCACCAGCACCTCACTCCCCAGGTGCCAAAGTCCTGCCGCCCCGTCTCATTGGAGTTTCCTGGTAGAGCTGCACCTGC-TCGCCCCTGCC-CTGTCCACTGTCCTCCGGGACTGGAGAATCCAGGCACCCCTGTTTCTGCCACTGACTCCCTCCGGCCAGGGTGCATCCCTCCCTTCCCCGCCCAGGGGCTGCCCAGCCCAGCCCACTAGACCAGTCACAG----GGAAAGCCTGCTTCCCAGCCT-GGCAAGCACGGCCCCCCTAAGCTCCTCCCCT-CCTCTCACTCAGAACTATTTCCCAGTTTGGGGAAGTGTCCCAGACGCCGGTTGGGGACCGGACGCCGGAGGCGAGCAcggccgggcgggccgggc-gggcgggggcTTCATGTTCGGCCGGGACACGACACCTGCACGCAGGCC-CCTGCAC a score=11581.0 s hg17.chr17_random 1984108 117 + 2618010 TTCCTCTTCAAGCACCCCTGCCNTTCAACT---GGATCGCTCGGCGCTCACTTAAACAGGCACCCCAAGGCGCCGGGCCTGGCCC---CCTCCCACATC--CCCA---CGGCTCCCTCCC--ACCTCCCG s panTro1.chr19 81242747 116 + 82489036 TTCCTCTTTCAGCACCCCTGCC-TTCAACT---GGATCGCTCGGCGCTCACTTAAACAGGCACCCCAAGGCGCCGGGCCTGGCCC---CCTCCCACATC--CCCA---CGGCTCCCTCCC--ACCTCCCG s mm5.chr11 120303918 118 + 121648857 TGCCTCCTTCGGAGCCTTTGCC-TCCAACTCACAGGTCTGTCAA-----ACTTAAACACG-ACCCC--GGATCCCGGCCCGACCTTCACCACCCGGATCGAGCCC---TGTCTCCCGACTAGACCGGCCG s rn3.chr10 110038691 105 + 110733352 TGCCTCCTTCGCGGCCTTTGCC-TCCAACTCACAGGTCCGTCAA-----ACTTAAACACG-ACCCA--GGATCCTGGCCCGACCTTCTCCGCCCGGATC---------TAGCCCT-------GTCTCCCG s canFam1.chr18 30422588 100 + 66173745 CTCGTCCTCG-----CCCAGCC-TTCAGCT-------CGCCCAGAA---GCCCAGACTTGAGCCGC--TGCCCTGGGCCTGGCCC---CCGCCCCGCTT--CCCC---T--CCCGCTCTC--ATCCCCCG s galGal2.chr3_random 684227 109 + 1636275 TTTTTTTTCCTGCGCGTTTGCA-AACGACC------TCACGCGG-----CCCT--CCGGGAACTCCAACGCGCCGGACTTTCCCC---CGTCGCACGGC--GTCAGAGCAGCGCCGCCGC--CCCTCCCG a score=42959.0 s hg17.chr17_random 1984225 221 + 2618010 CT--GGCGGCCTTTT----AGTCCCCGA-GGCCCCTCGCTCGAATCCCCTCCGGTATCAGCTTGAGCACCGAGTGACCTCACGCTGATGACTCAGCAAGTCTCCCTCCGGGCTCTGGCACGCGACTGACGGAACCCGAGCCC-------CAGCCA-GGGGCAGGGTCTTCCNCCGCAGCACCCCCA-TCGCCGCCCCTCCTCCCGGGCTCGCCGCGGACCCCCGCGCCGGGGAGAGC s panTro1.chr19 81242863 220 + 82489036 CT--GGCGGCCTTTT----AGTCCCCGA-GGCCCCTCGCTCGAATCCCCTCCGGTATCAGCTTGAGCACCGAGTGACCTCACGCTGATGACTCAGCAAATCTCCCTCCGGGCTCTGGCACGCGACTGACGGAACCCGAGCCC-------GAGCCA-GGGGCAGGGTCTTCC-CCGCAGCACCCCCA-TCGCCGCCCCTCCTCCCGGGCTCGCCGCGGACCCCCGCGCCGGGGAGAGC s mm5.chr11 120304036 179 + 121648857 AT--AGCGG-----------GCCCC----GGCCCCCCGCCCTGG-----CCCAGCGTCAGCAGGAGCACCGAGTGACCTCATGCTGATGACTCAGCACGTCT-CCGCTGGGCTC--GCACCCGCGTGG-------CGAGCCC-------AAGCCGCGCAGCAGGGTCTCCC-----------------CGCCGCCTCCCCT-GTGGGCCCG-CGCGCGACCCCGCCCGCGCGGAAGC s rn3.chr10 110038796 192 + 110733352 ACTAGACGGGCCGATAGCAAGCCCG----GGCCCCCCGCCCTGG-----CCCAGCGTCAGCAGGAGCACCGAGTGACCTCATGCTGATGACTCAGCACGTCT-CCGCTGGGCTC--GCACGCGCGTGG-------CGAGCCC-------AAGCCGCGCAGCAGGGTCTCCC-----------------CGCCGCCTCCCCT-GTGGGCCCG-CGCGCGACCCCGCCCGCGCGGAAGC s galGal2.chr3_random 684336 190 + 1636275 ------CGG----------GACCCCCGGTGACCCCGCAGCCGCCACCGCCGCGGTG-----------ACGGGAGGGCTCGGCGCGGGAGGAGCGGAGCGGCC-----CGAGCCC-----CGCGGCGGG--------GAACCCTCGGGAAGCGCCGCGCTGCGGCCTCGGCCTTCGCAGCCCCAACGCCCGCCGGGACGCC--GCGGGGCCGACCGAGGGCTGAGCGCCGGGGGGAGC a score=75936.0 s hg17.chr17_random 1984446 323 + 2618010 TGACGCGGCCACCGGATGAATCAGCAGCTgcgggccgggccgccgggccctggcgcggacccccgggcgccTCGCTCGACCCCACCCTTTCCTCCCNGCCGTCCAGTGCCCCTCCCTCCAGGACGCCCGGGTCTCCGAGTCCGCTCCGCACTcgcccggctccgcgggtccgccgccgcccgcggcccACCTCCAGTACCCGGGCGCCAGGGGCAGGAGGAGCTGGCTCCTGACCGCTGGGGAAATCGAGGCACGGGCCGCCAGCANGGTGCGCGGCAGACCCGAAACCAgcggcccccgccgccgggcccccAACCGCCCGC s panTro1.chr19 81243083 322 + 82489036 TGACGCGGCCACCGGATGAATCAGCAGCTgcgggccgggccgccgggccctggcgcggacccccggACGCCTCGCTCGACCCCACCCTTTCCTCCC-GCCGTCCAGTGCCCCTCCCTCCAGGACGCCCGGGTCTCCGAGTCCGCTCTGCACTTgcccggctccgcgggtccgccgccgcccgcggcccACCTCCAGTACCCGGGCGCCAGGGGCAGGAGAAGCTGGCTCCTGACCGCTGGGGAAATCGAGGCACGGGCCGCCAGCAGGGTGCGCGGCAGACCCGAAACCAgcggcccccgccgccgggcccccAACCGCCCGC s mm5.chr11 120304215 269 + 121648857 CGA--CGGACACCTGATGAGTCAGCAGCTCGGTGC--GGCCACC--CCGCTGACCCGGGCAGACGCGCGC--------AGCTCGCCCTTAAATCGC-GCC-------------CCCCGCAGGGCACCCGGGG-TCCG---CCGCCGCGCGCACGCCCG--TCCCCAGCCTCGCGGTCGCCCGGT-----CCGCCGGCTCTAGGGGGACACAGGC--GAACAGCCGGCT-------GGCGGGGAAACCAAGGCACGCGCTGCC-GTCGGGTGCGCCGCAACCCCGAGGCCA---GGCCCCGCCGCCCG--CCCCAGCCCCGCGC s rn3.chr10 110038988 276 + 110733352 CGA--CGGACACCTGATGAGTCAGCAGCTCGGTGC--GGCTACC--CCGCTGACCCAGGCAGACGCGCGC--------ACCTCGCCCTTAAATCGC-GCC-------------CCCCGCAGGGCACCCGAGG-TCCG---CCGCCGCGCGCACGCCCG--TCCCCTGCCTCGCCGTCGCCCGGT-----CCACCGACACTGGGGTGGCACCGGC--GAACAGCCCTCTTTTGACTAGCGGGGAAACCGAGGCACGCGCCGCC-GTCGGGTGTGCCGCAACCCCGAGGCCA---GGCCCCGTCGCCCG--CCCCAGCCCCGCGC a score=3392.0 s hg17.chr17_random 1984769 38 + 2618010 CTAGCTCCGGGAGGAGCCCTGCCTGCGCGCCCCCTCGG s panTro1.chr19 81243405 38 + 82489036 CTAGCTCCGGGAGGAGCCCTGAccgcgcgccccctcgg a score=291.0 s hg17.chr17_random 2035170 3 + 2618010 CAG s panTro1.chrUn_random 4069614 3 + 240967748 CAG a score=44612.0 s hg17.chr17_random 2035173 313 + 2618010 AGGCCATAAACAGATAGTTCAGAGCTATGAGAACCCAGGTGGCT---------------------AAAAACATGA----AAAACATGGTCTCACCAGTAATCCAAGAAATACAAAACAAAACAGTACGGCCCTGGCATTTGCGAAACAGGCCCTGAACCTGCGAGGTGTGGCCACCGAGACCGACAGGCACCACAGCCTGGGGGGGCGTCGGCCAGCGTGCTCCAGGAAGTTCACACCTTC-GACCTGTGTGTTCCACCCTGGACGAGCCATCCCAGAGACAA-GGGAGTGGACAAAACTCAGCGCCCAAACACGTTCTCACAGCATTGTTCATAATCAG s panTro1.chrUn_random 4069617 313 + 240967748 AGGCCATAAGCAGAGAGTTCAGAGCTATGAGAACCCAGGTGGCT---------------------AAAAACATGA----AAAACATGGTCTCACCAGTAATCCAAGAAATACAAAACAAACCAGTACGGCCCTGGCATTTGTGAAACAGGCCCTGAACCTGCGAGGTGTGGCCGCCGAGACCGACAAGCACCACAGCCTGGGGGGGCGTCGGCCAGCATGCTCCAGGAAGTTCACACCTTC-CACCTGTGTGTTCCACCCTGGACGAGCCATCCCAGAGACAA-GGGAGTGGACAAAACTCAGCGCCCAAACACATTCTCACAGCATTGTTCATAATCAG s canFam1.chrUn 6358237 319 + 91062872 AGGTCATAAACAGGTAGTTCAGAGCTGTGAAAACCCAAAAGGCTGATAAGTATATGGGAAAAAAAAAAAACAAAAAAACAAAAAACGGTCTCGCCCAGAATCAAAGGAACACAAAACAAAGCAGTTAGGCCTTTACCTCGG------ATACCCTGTGCC------GGACGGCTGCC--------CCGGGGCCACGTTCAGGGAAGAGGTCTGCCTGTGTCCTTGAGCGAGTGCACACCTTCGGACCTCGTCATCCTGCGCTCCACGAGGCACCGTGAAGAAGACAGAAGTAGACAAGACTC-GTGCCCCAGCACGTTCTCACAGCCCTGCGTGCGAGCAG a score=15347.0 s hg17.chr17_random 2035486 167 + 2618010 GGAAGTTAGGGCACATTTAAATAGTCAACATCAGAGCAGTGGTTAAGCAAATCCCCCAGTGCCTCTCAGAATCA-TATAATTGTTGAAAGAATGAATGGCGGACTGTGATGTAGCACGTAAGTCACATGGAGGAGGGGGTCTGAAGATCACGGGGATGCCTGTGGCCA s panTro1.chrUn_random 4069930 168 + 240967748 GGAAGTTAGGACACATTTAAATAGTCAACATCAGAGCAGTGGTTAAGCAAATCCCCCAGTGCCTCTCAGAATCATTATAATTGTTGAAAGAATGAATGGCGGACTGTGATGTAGCACGTAAGTCACATGGAGGAGGGGGTCTGAAGATCACGGGGATGCCTGTGGCCA a score=27329.0 s hg17.chr17_random 2035653 215 + 2618010 TATCGAAGGAAGAGCATGATGGGAAAATCCATCAGCGGCTCTCAAggacagagcaggggagagtgacttccaggaggggaagaagattccagatgctgatggggtgctg--------gtgagc---agtgcacacgcttgtcaaaactcatcaaactgcactaaaggtctgtgctttgtattgtgtataaattatGTTCTCATAAAGTTGATT-AAAATCTATTATG s panTro1.chrUn_random 4070098 215 + 240967748 TATTGAAGGAAGAGCATGATGGGAAAATCCATCAGCGGCTCTCAAGGACAgagcaggggagagtgacttccaggaggggaagaagattccagatgctgatggggtgctg--------gtgagc---agtgcacatgcttgtcaaaactcatcaaactgcactaaaggtctgtgctttgtattgtgtataaattatgttctcataaagttgatt-aaaaTCTATTATG s canFam1.chrUn 6358703 209 + 91062872 TGTCGAGAGAAT-GAGTGATGGG-------ATC-----CTCTGCAGCACAGAACAAGCAGGTGCAGGTGCATGGCGGGG----AGATCCCGTATTCTGG-AGGGCGCTGCCCAGGGTGGGGGCCAGGGCGCGCACGCCTGTCACAGTTCACAGACCTGCAGTCAAGATCCATGCATTGTTTTGTATGTTAGTCACAAATTAGCAAAGTCAATTCAAAATACATCATG a score=3075.0 s hg17.chr17_random 2035868 33 + 2618010 TAAAATTATATATAGACTTTCCCTCCATCTTAA s panTro1.chrUn_random 4070313 33 + 240967748 TAAAATTATATATAGACTTTCCCTCCATCTTAA a score=17388.0 s hg17.chr17_random 2035901 98 + 2618010 AATATATAGGAAAAAGACAAAGGAAATAGGTTAAAATATCACTAATGGTTCATTTGGAATAATGAGATTTGGAGAGTTGGACAATTTCTTCTTCTTAC s panTro1.chrUn_random 4070346 98 + 240967748 AATATATAGGAAAAAGACAAAGGAAATAGGTTAAAATATCACTAATGGTTCATTTGGAATAATGAGATTTGGAGAGTTGGACAATTTCTTCTTCTTAC s canFam1.chrUn 6359135 98 + 91062872 GATGTACAGGAAGAAGGCAAAGGAAGCGTGTGCAAACACCACTGGCGGTCCTTTGGGAATGGAAGGGTCTGGGCAGGTGGATGTTTTCTTCTTTGTAC a score=580378.0 s hg17.chr17_random 2035999 6395 + 2618010 TTTGTTTTCCgtggtaggtttgctcagtggtggcccccgcaaaagaaacgtttgcctcctagcctctgaatttgaatgtcaccatatttgggaaaagggtctttgcagatgtaatcttaataagagatcttaatatgagatcatctgagattacttggTTTTTAGtaagtaacctttaatttttagaacaattttaggttcacagcaaaattggatagaagttacacaggtttctcatatcacacccccacacaggcatacaacctccccttatcaatatttcccatcagagggtacatttgctacagtgaatgaacctacagcgacacagcatcgtgacccaactccgtggtttacatcaggatttactcttggtgttgtccattctaagcgtggacaaatttatcatgacgtgtagccaccgtggtagtgtcacagaacagcctcactgccctgaaaccctctgcgcttcccaggtcacccctccctcccccagctcctggcaaccactgattttatacggtctc---agttttgccttttgcaggatgtcatatagttgggatcatacagcacgtagccctttcagattggcttcttagtaatacatttgagtttctttcatggcttgacatctcatttcttttcagcgctgaataacactccactgtctggatgtgccactcacctactgaaggacctctttgttgttcccaagctttggcaattttgagtaaagctcctataaacgtctgtgtgcaggcttctctgtgtacatactttttcggttcatttacctaaataccaaagacagcgattgctggattctatggggagggtatgttccattttggaagagacggccagactgtcttcaatggtgctgcactgtcttgcgttcccagcagccgtgaacgagagctcctgttgctacacatcctggccagcattttgtgttctcaaaacacattctggccactctaatagatgtagagtggtatcattgttttaatttgcaatctctagtggcgtatgacgttgaacatcttttcataggcttacttgccatctatatatcttctttgatgaggtgtctgttttggtctcttgcccattttaaaatcaagttgttcatttttttattgttgagttttgattgttcttcatgtattttggatatcagttctttatcagatgtgtctgtggcttgccttctcattttcttgaaagtgtctttcacagagcagaaatttctaatttcaaagaagcccagcttatcaatcatttcttccatggatcgtgcctttaatgttgtatctaaaaagtcatcaccttacccaaggtcatctaggctttccctgtgttaacttctaagagttttatagttcgcattttacgttaggtctatgatccattttcagttagttttgtgatgggtgtaaagtctgtgtctggatttaatttctgcatgcagatgtccagttgctctatagcctcatttgttgaaaagacaatttttggccacagtatcgtctttgctcccttgccaaagatcagttgacaaaattatgtgagtctatttcaggactttatcctattctgttgctttatttgcctattctcatgtcagtatcttgattatggtgtcttttgcctctctctataaaccttagaatcagtttgtcaatgtctataaattaacttgctgggatttttattgagagtatgttcaatctacagattaatctagAACAACTGACTCGACAATATGTGAGAgggtctccaaaaggttcatggaaaatgcatattatgaaaaaatgcgtagatttcaatttcaaaataaactcatactaccttgttataacacatctgaacaggctctagtttgaggcactaagaagaataggacagcagtttcaaaagagcccctatcagggcaacatgaattctgccaaCTGAATctttgagtttctcaccattaagtaggatgtttgttttagttttttggtagatactctttaacaagttgaaaaaattctcctgtattcctagtttgctgagagtttttaatcacgaataagtgttaggttttgtcaaatgcatttttgcatccatggatatgatgatgagatttttcttctttagcctattgatgtgactaattttcaaatgttgaaccagccttgcatacctggaataaaccctacttttcataatatataattatttttacatattgttgaatttaatttgctaatattttgttgaggatttttacatgtatgctcgagagacatttgtctgtagtaatatctttgtctggttttggtattagggtaatgctggcctcatataatgagttagaaagtattcctgctgtttctacattctgggagatattgtagaggactggcataattttttccttaaatgtttggtagaattcaccaatgaacccatctgggcttggtgctttctgttttggaaggttattaattattgattcaatttctttaatataaacaggcctattcagattatttgtttcttcttgtgtgaattttggcagattgtgtctttcaaggaactgctccattttatctaggttatcaaattggtgggcatagcatttttcaaaatattcctttattattcctttaatgttcatgggatctgtagtgatgtccccctttcatttctgatattagtaatttgtctctctctctttttttcttagcctggcagaggcttaccaattttactcatcttttaaaagaaccagcatttgtttttgttaatattctctataattcctggtttcaattttattgatttctgctctaa-ttttattatttcttttattatggttagtttggatttaacttgctcttctttttctagtttcataaggtggaagcttagacgactgatgttagatcttcttttctaatatttgcattcaatgctgtaaatttctaagcactgctttaactgtttcccataaattttgataagttgtatttttatttttatgtaattaaaaaaactttttagaaacagggtcttgctctgtcacccaggctggagtgcaatggcatgatcatggctcactgcagcttcacactcttgggctcaagtcatcctcttgcctcagtctcctgagcagctggtactacaggcacatacaactgtgcccagttaatttttacatgtttttgtagagatgggggtcttgctgtgttgcccaggctgatctcaaactcctggcctcaaatgatcctcatgcttcagcctcctaaactgctaattcaaaatattttaaaatttatcttgagatttc--------------tttttttttttgagacagagtctcactctatcgcccaggctggagtgcagtggcacaatctcagctcactgcaaactccgcctcccaggttcacaccattctcctgcctcaacctcctgagtagctggggctacaggcgcccaccaccgcacctggctaattttttgtatttttagtagagacaggatttcaccgtgttagccaggatggtctcgatctcctgacctcatgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccatcatgcccagctgaaatttcttctttaacccatgtactttttaaagtgttttgtttaatcttcaagtatttgggaattttccagctatctttctgttattgattttgagtttaatctgttgtggttggaaagcaaacgttgtgtgatttctgatttataaatctgttaaaatgtgtttcctggcccagaatgtggtctctcttggtaaatattcaatgcaagcttgagaagaattctcaatctgctgttgttgggtgtagtatttagatgtcaattatgtccagttgattgatggtgttgttgagttcatctgtgtccttattgattttctacctgctggatctgttcatttctgatagagggctgtggaagtctccagctctaatactggattcatctatttctcattgcagtgctgtgatgtttttacctcgtatatatttggcactctgttgttaggcacatacacattaaggattgttacatcttcttggagtgctga-tcctttatcacctgtaatacttccctttgtctctgatagctttctttgctctgaagtctgctctgtctgaaattaatatagccactcccactttctttgattagtgttagcatggtatatctttctccatccatttacagcagatcttcaaataacatcattttgttcaacatcattttattttgttataatgataataagttttgtgcattctccccatgtctgtgtgggttttctctaggtattccagttcttcccacaccccaaagatgtgcacactaggagagctggtgtgtctccatggtctcactgtgagtgtgggtgtgtgtgaaatgtgccctgcaatggaaaagagtcctgtccaggattggttcccaccttgcaccctaagctgccgggataggctccagccacctgcaaccctgagctggagtaagtggattgaaaaataaatgaattattagtaaagtattttaaaataacaattcataaactatatgacaatcataaaaatacatgaccacaaataatgtggtacaaaagtgctcatcaagcctgccatgtttgctactgtttgtttttgaattgagtggtggtaggaggtgctcctcagaattttcagtttacaagcatttattccttgatttaacccaccaccactatgaccactgtcattgatgattcctcaaaattgagtaaataattatcttacttgttttaatctttcttaaatgtatgtatatcttacatttatttcaatgtttaatattataagtattttga--------gcctatatttagaagtttggtgatattgttgtgaccagaaatatgtcacaaaaaacttaactcttgtgtttatcaattagcctataggaaaagtggttttgttatacatcactttactcaaaaagccacagtttccaagaacctaccactgacgtttagtgaagacttactatacttttaatctatccgtgtccttctatgaaagtgggtttcttgtagatgacatatagttgggtattgttttctatctactctgacaatctgtcttttgattgatgtatttacaccattgacatttcagggattattaacataattgggttaatagctgctatattgtttactgctttctatttgttgcccttgatctttgtttctaattttgtcacacgttttctaccttttatggttttagttgaacattttgtattctttcattttctctccattctgagcatatcaactgtacttctttaaaaatttttttgtgtggtttcccttgagtttgcaatatacattatacaataatctgtaagtctactttcaaataacactatacagtttcatgggtggtgcaaatatcttataataacaaaatatttctaattcttaaccctttcttcctgtatcatgactgtcattcacttcatttatatgtgagcatatagatgcacacataattcagttcattgtcgctattattttgcactgttttctgtttgctaaattaaaaaaaagacaaagtttttattttacttcatttattcatgttccagtgctctcccttactttatgtagcttcaagtttctgacctacattattttccttctccttaaataatttcttctaatatttgttgtaaggaagtctattggcaaaaaattccctcaatttttatttgtttgagactttatttttccttcacttttaaaggataatttcgcagggtactgaattctagtttggtgtttttttctctcagcactttaaatatttcactccactctcttcttgcttatacagcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgccttccttccttccttccttccttccttccttccttccttccttccttccttccttccctccctccctccctccctccctccctctctccctctctctctctctcttttctttttctttctttttgaaagcctgttgcacaggctggagtgcagtggtgcacccacagctcatcacagcctagacctccctgggctcaagtgatcctcccacctcagcctcccaagtagctgggactacaagtgctcaccaccacacctggctaatttttgtgttttttgtagagatagagtcctgtcatgttaccctggctgatattgaactcctgggcttaagcatcccacttgcctcagcttcccaaagtgttgggattgtaggcatgagtcaccatgcccagctgcttacacaatttctgaggagaagtcagatg s panTro1.chrUn_random 4070444 6374 + 240967748 TTTGTTTTCCgtggtaggtttgctcagtggtggcccccgcaaaagaaacgtttgcctcctagcctctgaatttgaatgtcaccatatttgggaaaagggtctttgcagatgtaatcttaataagagatcttaatatgagatcatctgagattacttggTTttta-taagtaacctttaatttttagaacaattttaggttcacagcaaaattggatagaagttacacaggtttctcatgtcacacccccacacaggcatacaacctccccttatcaatatttcccatcagagggtacatttgctacactgaatgaacctacagtgacacagcatcatgacccaactccatggtttacatcaggatttactcttggtgttgtccattctaagcgtggacaaatttatcatgacgtgtagccaccgtggtagtgtcacagaacagcctcactgccctgaaaccctctgcgcttcccgggtcacccctccctctcccagcccctggcaaccactgattttatacggtctccatagttttgccttttgcaggatgtcatatagttgggatcatacagcacgtagccctttcagattggtttcttagtaatacatttgagtttctttcatggcttgacatctcatttcttttcagtgctgaataacactccactgtctggatgtgccactcacctactgaaggacctctttgttgttcccaagctttggcaattttgagtaaagctcctataaacgtctgtgtgcaggcttctctgtgtacatactttttcggttcatttgcctaaataccaaagacagcgattgctggattctatggggagggtatgttccattttggaagagacggccagactgtcttcaatggtgctgcactgtcttgcattcccagcagccgtaaacaagagctcc--ttgctacacatcctggccagcattttgtgttctcaaaatacattttggccactctaatagatgtagagtggtatcattgttttaatttgcaatctctagtgacgtatgatgttgaacatcttttcatatgcttacttgccatctatatatcttctttgatgaggtgtctgttttggtctcttgcccattttaaaatcaagttgttcatttttttattgttgagttttaattgttcttcatgtattttggatatcagttctttatcagatgtgtctgtggcttgccttctcattttcttgaaagtgtctttcacagagcagaaatttctaatttcaaagaagcccagcttatcaatcatttcttccatggatcgtgcctttaatgttgtatctaaaaagtcatcaccttacccaaggtcatctaggctttccctgtgttaacttctaagagttttatagttcgcattttacgttaggtctatgatccatttttagttagttttgtgatgggtgtaaagtctgtgtctggatttaatttctgcatgcagatgtccagttgctctatagcctcatttgttgaaaagacaatttttggccacagtatcgtctttgctcccttgccaaagatcagttgacaaaattatgtgagtctatttcaggactttattctattctgttgctttatttgcctattctcatgtcagtatcttgattatggtgtcttttgcctctctctgtaaaccttagaatcagtttgtcaatgtctataaattaacttgctgggatttttattgggagtatgttcaatctacagattaatctagAACAACTGACTCGACAATATGTGAGAgggtctccaaaaggttcatggaaaatgcatattatgaaaaaatgcgtagatttcaatttcaaaataaactcatactaccttgttataacacatctgaacaggctctagtttgaggcactaagaagaataggacagcagtttcaaaagagcccctaacagggcaacatgaattctgccaaCTGAATctttgagtttcccaccattaagtaggatgtttgttttagttttttggtagatactctttaacaagttgaaaaaattctcctctattcctagtttgctgagagtttttaatcacgaataagtgttaggttttgtcaaatgcatttttgcatccatggatataaggatgagatttttcttctttagcctattgatgtgactgattttcaaatgttgaaccagccttgcatacctggaataaaccctacttttcataatatataattatttttacatattgttgaatttaatttgctaatattttgttgaggatttttacatgtatgctcgagagacatttgtctgtagtaatatctttgtctggttttggtattagggtaatgctggcctcatataatgagttagaaagtattcctgctgttcctacattctgggagatattgtagaggactggcataattttttccttaaatgtttggtagaattcaccaatgaacccatctgggcttggtgctttctgttttggaaggttattaattattgattcaatttctttaatataaacaggactattcagattatttgtttcttcttgtgtgaattttggcagattgtgtctttcaaggaactgctccattttatctaggttatcaaattggtgggcatagcatttttcaaaatattcctttattattcctttaatgttcatgggatctgtagtgatgtccccctttcatttctgctattagtaatttgtcgctctctctttttttcttagcctggcagaggcttaccaattttactcatcttttaaaagaaccagcatttgtttttgttaatattctctataattcctggtttcaattttattgatttctgctctaatttttattatttcttttattatggttagtttggatttaacttgctcttctttttctagtttcataaggtggaaacttagacgactgatgttagatcttcttttctaatatttgcattcaatgctgtaaatttctaagcactgctttaactgtttcccataaattttgataagttgtatttttatttttatgtaattaaaaaaactttttagaaacagggtcttgctctgtcacccaggctggagtgcaatggcatgatcatggctcactgcagcttcacactcttgggctcaagtcatcctcttgcctcagtctcctgagcagctggtactacaggcacatacaaccatgcccagttaatttttaaatgtttttgtagagatgggggtcttgctgtgttgcccaggctgatctcaaactcctggcctcagatgatcctcatgcttcagcctcctaaactgctaattcaaaatattttaaaatttctcttgagatttctttctttctttttttttttttttttgagacggagtctcactctatcgcccaggctggagtgcagtggcacaatctcagct-----caaactccgcctccaaggttcacaccattctcctgcctcaacctcctgagtagctggggctacaggcacccaccaccgcgcctggctaattttttgtatttttagtagagacaggatttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgcctgcctcagcctcccgaagtgctgggattacaggcgtgagccatcgtgcccagctgaaatttcttctttaacccatgtactttgtaaagtgttttgtttaatcttcaagtatttgggaattttccagctatctttctgttattgattttgagtttaatctgttgtggtcggaaagcaaacgttgtgtgatttctgatttataaatctgttaaaatgtgtttcctggcccagaatgtggtctctcttggtaaatattcaatgcaagcttgagaagaattctcagtctgctgttgttgggtgtagtatttagatgtcaattatatccagttgattgatggtgttgttgagttcatctatgtccttattgattttctacctgctggatctgttcatttccgatagagggctgtggaagtctccagctctaatactggattcatctatttctcattgcagtgctgtgatgtttttacctcgtatatatttggcactctgttgttaggcacatacacattaaggattgttacatcttcttggagtattgattcctttatcacctgtaatacttccctttgtctctgataactttctttgctctgaagtctgctctgtctgaaattaatatagccactcccactttctttgattagtgttagcatggtatatctttctccatccatttacagcagatcttcaaataacatcattttgttcaacatcattttatttcgttataatgataataagttttgtgcattctccccatgtctgtgtggcttttctctaggtattccagttcttcccacaccccaaagatgtgcacactaggagagctggtgtgtctccatggtctcaccgtgagtgtgggtgtgtgtgaaatgtgccctgcaatggaaaagagtcctgtccaggattggttcccaccttgcgccctaagctgctgggataggctccagccacctgcaaccctgagctggagtaagtggattgaaaaataaatgaattattagcaaagtattttaaaataacaattcataaactatacgacaatcataaaaatacatgaccacaaataatgtggtacaaaagtgctcatcaagcctgccatgtttgctactgtttgtttttgaattgagtggtggtaggaggtgctccttagaattttccctttacaagcatttattccttgatttaacccaccaccactatgaccactgtcattgatgattcatcaaaattgagtaaataattat----cttgttttaatctttcttaaatgtgtgtatatcttacatttatttcaatgtttaatattataagtattttgagcctatatgcctatatttagaagtttggtgatattgttgtgaccagaaatatgtcataaaaaacttaactcttgtgtttatcaattagcctataggaaaagtggttttgttatacatcactttactcaaaaagccacagtttccaagaacctaccactgacgtttagtgaagacttactatacttttaatctatctgtgtccttctatgaaagtgggtttcttgtagatgacatatagttgggtattgttttctatctactctgacaatctgtcttttaactgatgtatttacaccattgacatttcagggattattaacataattgggtcaatagctgctatattgtttactgctttctatttgttgcccttgatctttgtttctaattttgtcacacgttttctaccttttgtggttttagttgaacattttgtattctttcattttctctccattctgagcatatcaattgtacttctttaaaaatttttttgtgtggtttcccttgagtctgcaatatacattatacaataatctgtaagtctactttcaaataacactatacagtttcacgggtggtgcaaatatcttataataacaaaatatttctaattcttaaccctttcttcctgtatcatgactgtcattcacttcatttatacgtgagcatatagatgcacacataatccagttcattgtcgctattattttgcactgttttctgtttgctaaattaaaaaaaagacaaagtttttattttacttcatttattcatgttccagtgctctcccttactttatgtagcttcaagtttctgacctacattattttccttctccttaaataatttcttctaatatttgttgtaaggaagtctattggcaaaaaattccctcaatttttatttgtttgagactttatttttccttcacttttaaaggataatttcgcagggtactgaattctagtttggtgtttttttctctcagcactttaaatatttcactccactctcttcttgcttataCAGCCAgcctgcctgcctgcctgcctgcctgcctgcctg--------ccttccttccttccttccttccttccttccttccttccttccttccttccttccCtccctcc----------------------------ctctctctctcttttctttttctttctttttgaaagcctgttgcacaggctggagtgcagtggtgcacccacagctcatcacagcctagacctccctgggctcaggtgatcctcccacctcagcctcccaagtagctgggactacaagtgctcaccaccacacctggctaatttttgtgttttttgtagagatagagtcctgtcatgttgccctggctgatattgaactcctgggcttaagcattccacttgcctcagcttcccaaagtgttgggattgtaggcatgagtcaccatgcccagctgcttacacaatttctgaggagaagtcagatg a score=1060.0 s hg17.chr17_random 2044928 109 + 2618010 CATATTCTAAAGTGATGCACCCAATGGTGTCCAGAGACAGACTAGCCTGGAGTTGGATGGGGGGCCAGTCTGGGGATGCAAAGGTCTAGAGAAGCCCAGGCCAAGGGCA s rn3.chrUn 69985205 63 - 75822765 CATTTTCTAAAATGGCATACCCAGTGGTGTCCTGAGACAGAT--GTCTG--TTTGGGT-GGTGGCCAG----------------------------------------- a score=138.0 s hg17.chr17_random 2045033 4 + 2618010 GGCA s mm5.chr11 121449148 4 + 121648857 GGTG a score=17230.0 s hg17.chr17_random 2045037 149 + 2618010 GGCAGAGCAGGGTGGGAGTGGGAGCAGGAGGG-----GATGCTGGGGGCAGTGGCAGCACATGTGTCCCAAACCACTGCCTCCTAGGTGGGGTGGGAC--GGGCCCCAACACACCACCTGGCTGTGCCCCGTGTGGGGGTCAGGGGTGCAGCGAGG s mm5.chr11 121449152 148 + 121648857 GCCAGAGTAGAGCAGCAGAGAGGATGGAAGAG-------TGGTTGGAGTGAGGAAGACCTGTGTGCCCCAAGCCACTGCCTCACAGGTGGGCTTGGATAAGGACTCCAAAACACTTCCTGACTGTAGTCTCTAT-GAGGTCAGGCATGGAGTGAGG s rn3.chrUn 69985268 148 - 75822765 -----AGTAGAGCAGCAGAGAGGGTGGAGGAAGGAAGGGTGGTTGAACTGAGGTAGGCCTTTGTGCCCCAAGCCACTATCTCACAGGTGGGCTTGGATAAGGACTCCAAACCACTTCCTGAC--TAGTCTCCAT-GAAGTCAGGCATGGAGTGAGG a score=232.0 s hg17.chr17_random 2045186 8 + 2618010 AGGGCTGg s rn3.chrUn 69985416 8 - 75822765 ATGGTGGG a score=138.0 s hg17.chr17_random 2047567 4 + 2618010 CTGG s canFam1.chrUn 6360835 4 + 91062872 CCAG a score=-729.0 s hg17.chr17_random 2047571 100 + 2618010 CTGCACGGGTTGCCT-CAGCTCTGCCTGCCTCTCTGTTCGTG-------------------CCTCTCTCCTACCTGGCGGGGGTGTCTCTGTTG--GCCTCAGAGATGTC-GCTGGTGC-----TCAC-- s mm5.chr11 121451751 103 + 121648857 CTGCCAGGGCTGACTATGGTTCTCTCAGCCCCCTTTCTAGTG-------------------CCTTACTCTC------TGGGAGTGCCCCCAGTGTTATCTTATCAATGTCTGCTTTTACCACTTTCTC-- s canFam1.chrUn 6360839 116 + 91062872 GTGCACGGGGCCCTT-CACCCCTGCCCATCTTCCCTGCAGCGGGGGCACCACTGATGCAAACCTCTCTTTCACCT--CGGGGGTG-CTCCGCTG--GCCTTCAGCACG---GCTCCTCC-----TCTCAC a score=24807.0 s hg17.chr17_random 2047671 196 + 2618010 CCTGGTCACACTGACCACTGGGCATCCTCCCACCCCCTGGGCCACTTCTGTCTCTGCACTTGGCTTCCCTGCCCA-CGGCGTGCCA---CCCAAACAAAGCCCACAGAGAGGCTGGCGCC----------------------CTCCTCAGCCAGATGCCTGCATTTAATAGAAGATGC-AGAGACACAATCTAAGCCAAAGGAATGAATCTCTAGTGGTGAAA s mm5.chr11 121451854 217 + 121648857 AGCTGCTGCATTTAATGTTGGACACCCTCTCACTTGGTAGGACACTGCTGTCACAGCACTTGACT-CCTTCTCCA-AGGTTTGTTATTGCCCAAACAAAGTCCATAGAGTGACTTGTGCTTGG----TAACACAGTGCTGATCTCCTCAAACAGACACCGTTACAGAATAGAAAATACTAGGGACCCACTGCAAGTTAAAGCAACGAACTTCTAGTGGCAAGG s rn3.chrUn 69987360 213 - 75822765 CCCAGCTGCATTTAATGCTGGACACCCTCTCCCTTGATAGGACACTGCTGCCACAGTACGTGGAT-CCATTTCCA-AGGCATGTTCTTGCC----CAAAGTCCATAGAGTGACTCGTGCTTGACAACT----CAGTGGTGCTCTCCTCATCCAGACACCTTTACAGGATAGGAAATGCTAGTGACACACTGAAAGCTAAAGCGAAGAACTTGTAGTGCTGAGG s canFam1.chrUn 6360955 187 + 91062872 -GTTTCTGCACTGAGCCTGGGGCTTCCTCCCACCCACCGCACTGCT-CTGTCTCCGCCCATGGCTCCCCGGCCCACAGGGGGGCTGGTGCT-----------CGGGTATGCACTGGTGCC----------------------CTCTGCGTCCGGATACCTGAATGTCATAGGAAGTCTGAGTGACGTAATTCAGGC-AAAGGAATGCATATCTAATGGTGAAA a score=16852.0 s hg17.chr17_random 2047867 46 + 2618010 TAGCATCTGGTAAGAGGAGAGATTTCTGAAAGGAGGCC--------------------CCTTTCTC s panTro1.chrUn_random 4093746 45 + 240967748 TAGCATCTGGTA-GAGGAGAGATTTCTGAAAGGAGGCC--------------------CCTTTCTC s mm5.chr11 121452071 66 + 121648857 TAGCAGCTGGCAAAGGGAGCGATTACTTAATAAAGGCCCTTTCCACCACCTTGTCTTTCTTTTCTC s rn3.chrUn 69987573 55 - 75822765 CGGCAGCTGGTAAAGGGAGAGATTATCTAATGAGGGCCCCTCCCACC-----------TCCTTGTC s canFam1.chrUn 6361142 46 + 91062872 TACCAACTGGTGAGAGGGGACACTTCTGAATCAAGACC--------------------CTTTTATC a score=68761.0 s hg17.chr17_random 2047913 295 + 2618010 CTTCTCGCCCC-----------TCCTTGCTCTGGAGGCTGAGTCCAGCTGTTCCTCCCATGCCCCTGCCCGGAGGGCAACGTGCACCAGGGCC----TGAGAGCACAGACAGGTCTAGGTGGGATCCGTGTC-AGCACCGCAGGGCACAC----GAACGACTCGGCAGGCTCCAGAGTTTGGCTCATTTTCTGCTTGGTCCCTTTTTGATGCCTGTGATTTATTTATAACAATAGTTTGCATAATTCCAAATGTGGTGACACAGCCTGCAGACGCTGAGTGAAATGAAGACAGAACAGATT--------TTTCAGAGGGGTAG s panTro1.chrUn_random 4093791 295 + 240967748 CTTCTCGCCCC-----------TCCTTGCTCTGGAGGCTGAGTCCAGCTGCTCCTCCCATGCCCCTGCCCGGAGGGCAACGTGCACCAGGGCC----TGAGAGCACAGACAGGTCTAGGTGGGATCCGTGTC-AGCTCCCCAGGGCACAC----GAGCGACTCGGCAGGCTCCAGAGTTTGGCTCATTTTCTGCTTGGTCCCTTTTTGATGCCTGTGATTTATTTATAACAATAGTTTGCATAATTCCAAATGTGGTGACACAACATGCAGACGCTGAGTGAAATAAAGACAGAACAGATT--------TTTCAGAGGGGTCG s mm5.chr11 121452137 279 + 121648857 CATCTTCCTAC-----------CTCTTGCTCTAGAGGCTGAGTTCATCTGTCCCT-CCATGACCCT-CTTGGAAG-----ATGCTC---AGCCAATATGAGAGCATAGATAAGTCCAGGTGGGATCCCTCTCTAGCTCTGAGGGCCACACACATGGGTGACTGGGTA-GCACCAAAACTTGCCTCA----------------------ATGTATGATGTTTATTCATAAGATTAATTTTCATCATTGCAAATGGGTTGATATGGCCCATAGATTCTTTGTAAAATGAAATTAGAATAGTTTTTTGTTTGTTTTAAAGAGAAAG s rn3.chrUn 69987628 275 - 75822765 TTTCCTTCTCCCATCTTCCTATTTCTTGCTCTAGAGGCTGAGTTCATCTGCCCCT-CCATGACCCT-CTTGGAAG-----GTGCCT---ACCTGAGATGAGAGCATAGATAAGTCCAGGTGGGATCCCTCGCTAGCTCTGAGGGCCACACACGTGAGTGACTGGGCA-GCACCAAAACTTACCTCA-------------------------------------GTATAACACACTTATTCATCATTCCAAATGGGTTGACACAGCCTGTCGATTCTTTGTGAAATGAAATTAGAAGAGTTTTTCCTTTGTTTTAAAGAGAACA a score=3769.0 s hg17.chr17_random 2048208 126 + 2618010 TGG--TGTGGAG---------------CAGGCTGGGCCGCGAGTGATAGAACTGAGCC--CCAGGTTGTGCTCGGAGT--------------------CTCCT-GGTGCC--------------AGAACACTGGGCTTCCGTGGGACCTGAGGGGCTGAAACGGTGCTGGACCTGGACC--C s panTro1.chrUn_random 4094086 126 + 240967748 TGG--TGTGGAG---------------CAGGCTGGGCCGCGAGTGATAGAACTGAGCC--CCAGGTTGTGCTCGGAGT--------------------CTCCT-GGTGCC--------------AGAACACTGGGCTTCCGTGGGACCTGAGGGGCTGAAACGGTGCTGGACCTGGACC--C s mm5.chr11 121452416 98 + 121648857 TAGTTTGTGGAG----------------------------AAGTG--AGGACTGAGGTAACCAGACTGTGTTCTGAGA--------------------TACCTAGATGCT--------------GAGACATTAGACAAAAATGTTCCCTTAAGA------------------CTAGGCC--A s rn3.chrUn 69987903 95 - 75822765 TAGTTTGTAGAG----------------------------AAGTG--AGGACTGAGGTAGCCAGACTGTGTTCTAAGC--------------------CTCCTAGATGCT--------------GGGACATTAGACTAAAAT-----------------------GTTCCCCTAAGACCAGC s canFam1.chrUn 6361518 173 + 91062872 AGG--TGTGGACGGTCCCGTCCCGCCCCACGCGGGCCCACAGCCGGCAGGTCGCTGCT--CCTCGTCACGTGAGGAGTAACTCTGCGGGTTCGCTGTGCTCCT-GGCGTCAGGGGCGCAGGTGAGGAAGACGGGGCTGCTCAGGGCCCCT--GAGTGGGGCGGGTGGGGGAGCCGGGCC--C a score=50429.0 s hg17.chr17_random 2048334 342 + 2618010 TTCCTCACAGTCACCCTCAGGTAGCCCATCTCAGACAGGAGGGGACCCCTTGTCCCCCATCCCCATGTTTGGAGCGTGCTGAGCTGCACACAGTCCTCCCTGGGTCTGAGACCGCT-GGTCCTGCCCCCACCCCAGCTCTCTCCCCTCTGGGTCTTGGGTTTCAGCTGTGATGTCATCCTGCTTGCCTGGAGTCCAGAGGGGTTAGCTG--GGGGGCTCTTGTTTGCCCAGAATTCCTTGTGGCTGTCCAGTCTCAGTGCCCACTGTGATGCCTGACCCTCCGTGA---GAGCCAGCACTCAG-GTCAGAGATCGTAACCTCCCGAGTGCTGAGTGTCTCCGGCGCCGC s panTro1.chrUn_random 4094212 344 + 240967748 TTCCTCACAGTCACCCTCAGGCAGCCCATCTCAGACAGGAGGGGACCCCTTGTCCCCCATCCCCATGTTCGGAGTGTGCTGAGCTGCACAGAGTCCTCCCTGGGTCTGAGACCGCT-GGTCCTGCCCCCACCCCAGCTCTCTCCCCTCTGGGTCTTGGGTTTCAGCTGTGATGTCATCCTGCTTGCCTGGAGTCCAGAGGGGTTAGCTGCGGGGGGCTCTTGTTTGCCCAGAATTCCTTGTGGCTGTCTAGTCTCAGTGCCCACTGTGATGCCTGACCCTCCGTGA---GAGCCAGCACTCGG-GTCAGAGATCGTAACCTCCCGAGTGCTGAGTGTCCCCGGCGCCGC s mm5.chr11 121452514 293 + 121648857 CACATC-CAACCATCTTTAAGTGATCT-TTTTGTAGGGGAGGGACATGGTAGCTGCTCAACCCCAGCAT-------TGCTGAGTTCTACAGAGTTATGTCTAGACCTGAGCCATCTGGGTCCTCTCCACTCCCCAATTT-------------------------------GTCTCGCCTTGCCTA-CTACAGTCT--TAGGGTCA------GAGAGCTGCTGTTTTTCCAGAA-GCCTTGGAGCTCCCCAGCTTTGATACCCATTGAGAGGCCTGATCTACAGTGCTCTGAGTGGGTACTTGGAGCCAGGGTGTGGACCATCTTGAGCAAAAAGTGTTCCCAG------ s rn3.chrUn 69987998 256 - 75822765 ATCTTC-CAGTGACCT------------TTCTGTAGGGGAGGGA-------------------CATAGT-------ACCTGGGTTGTACACAGTTATGCCTGGGCCTGAGCCATCTGCATCCTCTCCACTCCCTTAT-------------------------------GGGTCTCACCTTGCCTA-CTGCAGTCT--TAGGTCTG------GAGAGC---TGTTTTTCCAGAA-GCCTTGGGGCTCCCCAGCTTTGCTACCCATCGAGAGGCCCGATCTACAGTAA----ACTGGATACTTGGAGCCAGGGTGTGAACCATCTTGAGCAAAAAGTGTTCCCAG------ a score=65407.0 s hg17.chr17_random 2048676 519 + 2618010 CCAAGCTCAGGGCATGTTTGTGTCTCAGTTCAGG-----GCATGTTT-ATGAATTGACAAATGAAGTTTTGGAAGAGGACAAGTTCACATACACTTGACCACCGAGAGATAGAGGGAGGGTTTCACATAGCTCTCTACCATGGGGGGGAGCGGTTTTCCCCTGGGGCCTAGTGTGTGGCCCTGTCCAAGCTCACCCAGCCTCCCCTTGAGGGAGCACCATAGATTCCGGATGCTCAGACC--ATG--TTGGAAGCTCAGGCCTTTGGAACACCTCAGATCCTACTCCAGCCTTTCTAGAAGCTGGGGTTTAATATATCTTAGCAGATGGGAATGTCCTGTCACTCAGAGAAAAGGCTGGGCAAGGTCTCTCTGGGGATGAAAC-CACTTAGCGCTCTTCTTTTGGGGGATTTAAGCGCAAATGATTCAGAAACAGTCAGGCTTCATTTCTTGACA----------------CGGGGCTGGAGGAGGTGAGAAGGGCGTTG-ACCAAATGAAATTTGGGTTTGGTCCAAGTCAGAAATGTGTGAGATG s panTro1.chrUn_random 4094556 518 + 240967748 CCAAGCTCAGGGCATGTTTGTGTCTCAGTTCAGG-----GCATGTTT-ATGAATTGACAAATGAAGTTTCAGAAGAGGACAAGTTCACATACACTTGAGCACCAAGAGATAGAGGGAAGGTTTGATTCAGCCCTCTACCATGGGGGG-AGCGGTTTTCCCCTGGGGCCTAGTGTGTGGCCCTGTCCAAGCTCACCCAGCCTCCCCTTGAGGGAGCACCATAGATTCCGGATGCTCAGACC--ATG--TTGGAAGCTCAGGCCTTTGGAACACCTCAGATCCTACTCTAGCCTTCCTAGAAGCTGGGGTTTAATATATCTTAGCAGATGGGAATGTCCCGTCACTCAGAGaaaaggctgggcaaggcctctctggggatgaaac-cgcttagcgctcttcttttgggtgatttaagcgcaaatgattcagaaacactcaggcttcatttcttgacg----------------tgggcctggaggaggtgagaagggcgttg-accaaatgaaatttgggtttggtccaagtcagaaatgtgtgaaatg s mm5.chr11 121452807 443 + 121648857 -AATGCTCAGTG------------------------------------------TGATTAGTGGAGTCTAGGAGGGAGACAA-TTCAC-----CTTG--TGCCTAGCAGCAGAGGTAACCCTGTGATTA---CTGTGCTCAGTGAAGGAGCAGCTT--CCCTGTGAGCCAGCGTGGAGCCCTGATCCCAATCACTGTGCTGGTCC---AGCAACTTTCATGGGTTCTTGATGCCCACATC-GATGA-GCAGAAACTTGGGAC-CTAGTATGCTTCTGACCCTACTTGAAC---TCTCAAGCCTGAGGTTCTGTGCATGGCA-CAAAAAGAAAC-TTCTATGGTTTAGAGAG------GAGCTAAGCTACATTGGTGAGGAAACTCACCAATGGCAGCTC---TAGGGGAGTCATG-GGAAATGACTCAGAGTCATGTGAGTTTTGTGTTTTTA---------------------------AAGAGGTAAACAGGACATTTCAGCACACACAATCTGAATTTGACTGGAGTCAGGAATAGGTGAGCTA s rn3.chrUn 69988254 429 - 75822765 -CATGCTCAGTG------------------------------------------TGATTAATGGAGTCTGGAAGGGAGACCA-TTCAC-----CTTG--TGCCTGGCAGAAGAGGTAACCCTGTGATTA---CTATGTTCAATGAAGGAGCAGCTT--CCCCGTGAGCCA-TGTGGGGCCCTTATCCCAGTCACTATGCTGGTCC---AGCAAATTTCATGGGTTCTTGATGCCCACATG-CATGA-CAGTAAACTTAGGAC-CTACTATACTTCTGACCCTACTTGAAC--TTCTCAAGCCTGCGGTTCAGTGCATGGCA-CAAACAGGAAC-TTCTATGGTTCAGAGAG------GGGCTAAGCTAGATTGGTGAGGAAAC-CA--GATGGCAGCTC---TAGAGG--TCATG-GGTGATGACTCAGA---------GTTTTGTGTTTTCA---------------------------AAGAGGTAAAGAGGGCATTTCGGCACACACAACCTGGACTTGAAAGGAGTCAGGAATCAGTAAGCTA s canFam1.chrUn 6362086 474 + 91062872 CCCAGCTCTGGCCGCGCCGCTGCCTCCGCTTCGGCCCGCGCGTGTCTGGGGAATCAGCGGATGCCGCCTGGACACAGGCCAG-AGCAC-----CT----CACGTGGAGGCACAGGCAGGCACAGGGAGGGCTTGTC------------AGGACCCT--CCTGGATGCCCAGCG---GGCCCCGCCCCAGGCTGCCCA--CGGCCCCCGACTGAGC-CCATGGGTTCTGCACACCCAGGCCCCTTGACTTTCAAGCTGTGGGC-CTTCATCATCTCGACTCCGCCCGGAGCTCCCGCAGAAGCT--GGCTGGGTGTCTCCTGGCCACTGACAACTTCCCGT--TTCGGGGGG-------------------TTGGG---------CA---GGTGCTCCTC-CCCGGCTGACTCAGG----CATGATTCAGAAACGTGTGGGTTTCGTCTCTTGGAAGCACGTGGGTTGACACGGGGGCTGGAGAAGGTGAGGAGGGTTTTG-GTTAAA-GAAATTTGGATTTGGCCCAAGTCAAAAATGTGAGTGATg a score=15832.0 s hg17.chr17_random 2049195 75 + 2618010 AATGGGGACAGGTTTCCCGAGCCCATTTAGGTCTGTGCACGGTTACCAACAGCAGCAGCGGAGG-----CCGGGGCACCA s panTro1.chrUn_random 4095074 75 + 240967748 aatggggacaggtttcccgagcccaTTTAGGTCTGTGCACGGTTACCAACAGCAGCAGCGGAGG-----CTGGGGCACCA s mm5.chr11 121453250 62 + 121648857 AAT--------TCCTTCCAAGACCTTTTAGGTTTGCATGCAGCTA-----ATCTACAGAGATGG-----CTGGCACATCA s rn3.chrUn 69988683 69 - 75822765 AACTGGAACA-GCCTTCCAAGGTCTTTTAGGTTTGTACGCAGCTA-----ATCTACAGAGATGG-----CCAGCACATTA s canFam1.chrUn 6362714 66 + 91062872 AAGTGGGACAGGTTTTCCCAGCATGCT---GTGTGTGCGTGGCTG---------ACAGAGCAGGACTGCCCGGGGTAA-- a score=-57.0 s hg17.chr17_random 2049270 8 + 2618010 GGGTGGGG s panTro1.chrUn_random 4095149 8 + 240967748 GGGTGGGG s mm5.chr11 121453312 7 + 121648857 ATG-GAGT s canFam1.chrUn 6362780 8 + 91062872 AGACAGGG a score=0.0 s hg17.chr17_random 2049278 15 + 2618010 CTCCTGAATGGGACA a score=1446.0 s hg17.chr17_random 2049278 5 + 2618010 CTCCT s panTro1.chrUn_random 4095157 5 + 240967748 CTCCT s mm5.chr11 121453319 5 + 121648857 CTCCT a score=955.0 s hg17.chr17_random 2049283 10 + 2618010 GAATGGGACA s panTro1.chrUn_random 4095162 10 + 240967748 GAATGGGACA a score=12620.0 s hg17.chr17_random 2049293 88 + 2618010 TGAAGAAGGGTTACCCCTTCTGCCATAAGCAACAGGCAGGGCAGATTTTACAAACGCGTTTTCTAGCATTGTTTCTTTCAGCCCAAAA s panTro1.chrUn_random 4095172 88 + 240967748 TGAAGAAGGGGTACCCCTTCTGCCATAAGCAACAGGCAGGGCAGATTTTACAAACGCATTTTCTAGCGTTGTTTCTTTCAGCCCAAAA s canFam1.chrUn 6362788 83 + 91062872 TGAGGAGGGGT--CCCCTTCGGCAGCAAACAGCAGCCAACGGA---CTTGCAGGATGATGTCCCAGCATTGTCTCTTCCAGCCGCGAA a score=30169.0 s hg17.chr17_random 2049381 336 + 2618010 GAGTTCTGTGAGTTCATCTTCAGAAATCAAGTTTCTGAGAGGTGGGGAC-ATCCAAGGACACTGGAGATTGGGATGTCCGGGAAAACG--GGGTCTTCAGGCCCGATCTCTGCCCACCTTCCATGCCCTTTCCCCAGCCTGCCCCTCCAGGGTGCAGCCTCCCCATGCCGACGAGGTTCCCTGGCACAAGCAGGCTGGTGTGCATGTCTGTGCTTTGGCTGCAGGAGCTGCAGAGAGGGTGATGTCAGG------TCCATGTTGTG-----TAGAGAGAATTCCGACATCGCCC------AGC------------AGGTGCTCGGGTGCCG-TGTCCAGCAGCTTGGTGGGCTTCCTCAGCCCCTCAGA s panTro1.chrUn_random 4095260 336 + 240967748 GAGCTCTGTGAGTTCATCTTCAGAAATCAAGTTTCTGAGAGGTGGGGAC-ACCCAAGGACCCTGGAGATTGGGATGGCCGGGAAAACG--GGGTCTTCAGGCACGACCTCTGCCCACCTTCCATGCCCTTTCCCCAGCCTGCCCCTCCAGGGCGCAGCCTCCCCATGCCGACGGGGTTCCCTGGCACAAGCAGGCTGGTGTGCATGTCTGTGCTTTGGCTGCAGGAGCTGCAGAGAGGGTGATGTCGGG------TCCATGTTGTG-----TATAGAGAATTCCGACATCGCCC------AGC------------AGGTGCTCGGGTGCCA-TGTACAGCAGCTTGGTGGGCTTCCTCAGCCCCTCAGA s rn3.chrUn 69994136 336 - 75822765 CAGCTGTGTGTGCTCACCTCCAGAACCCGAA-TCCTGAGCGATGGGGAC-AT-AGATTCTCCTGAAGTCTGGGAGGTC----AAGTTGGTGGGTTTTCAGGTATTAACAAGGCCTGCATTTTATACCTCTTGCTC-----------TCAAAGAACAGCCTCCTTATGTT-ATAGGGTTCCC-----------AGCTACTGTG---GGGTATGTTCTGGCTATCAGCACAGGATAAGAGACTGTGTTAGAGATAACCTCTTGTTTTGTGTTTTAATGGGAACTCCTGTGGTGCCCTTAGGGAGCTGTTTCTATGCTAGGTTCTCAGGTGCTTCTGTCCAGCAGTGTTGGGGTGCTCCTCAGCCCCTGAGC s canFam1.chrUn 6362871 203 + 91062872 CAGC--TGTGAGCTCAGCTTCAGAGCC-----TCCTGAGGGCAGGGGCCTGTCCAGGGTCCCAGGAGCCTGGAGC-------AAAGTG--AGG-----------GAAGTGGGTCCATCCTCAA----------CCAGCCTCCCCCTTCGG---------------------------CCCC------------------------------------GCAGCAGGAGCTCCA-----GGTGATGTCTGC-----------GTCCTC----------------------------------GGC------------AGGTGCTCGGGTG-TG-CGTCCAGAGG--GGACTGGCCTGCTCAGGCCCACTGG a score=41070.0 s hg17.chr17_random 2049717 201 + 2618010 CCCCCAAAACCATTTTCTTTTTTTGCATCCATCAATGTCCCGCACAGGAGCAGGCCCCTCCCAGGTGAGGTGGGCTTGGATGCAGGAGGGAAGTGGTAAAGACCCCTCCCAGAGACAATGCAGAATTGGCCTACACGGGTGGGGCATT---GGAAGCCAGCTCTGGGGGTACTGACTCAGGAAGATGTGCCTCAGCTGAGCCCC s panTro1.chrUn_random 4095596 201 + 240967748 CCCCCAAAACCATTTTCTTTTTTTGCATCCATCAATGTCCCGCACAGGAGCAGGCCCCTCCCAGGTGAGGTGGGCTTGGATGCAGGAGGAAAGTGGTAAAGACCCCTCCCAGAGACAATGCAGAATTGGCCTACACGGGTGGGGCATT---GGAAGCCAGCTCTGGGGGTACTGACTCAGGAAGATGTGCCTCAGCTGAGCCCT s mm5.chr11 121456725 186 + 121648857 CCCAGAAAACCATTTTCTTTCT------------ATGTACCATGCAGG-GCAGGGCCTGTCTAGATGTGAT-GTTTATGATGCGGAAAGGAAGCAGC-AAGATCTATGTCAGAGACATTGTAAGACTATCAGAGCCAGGCGAGGCTCT---GAAAGCCAGCTATAGGAGTGTCGCTTCAGGAAAATGGGTTTCATGGGGCACTT s rn3.chrUn 69994472 171 - 75822765 CCCAGAAAACCAATTTCTTTCT------------ATGTACCATGGAGG-GCAGGCCCTTTCTAGATGTGAT-GTTTATGATGCAGGAAGGAAGCAGC-AAGATCTATATCAGAGACACTGTAAGATTGGCAGAGATGGCTTGGGCTCT---G-AAGCCAGCT--------------TTAGGAATATGGTTTTCACGGGGGACTT s canFam1.chrUn 6363074 160 + 91062872 CCCCGAGGAAGCTGCTCTGTGT------GCCTCGGTGTCTGCGGTGGGAGCTGGCC------AGGTGGGCC-------ACTCCAGG------------GGGGCCTCTCCAGGGGG------------GGCCTCTCCAGGTGGGCCTCTCCAGGTGGGCTGCTCCAGGGGGGCCTCTCCAGGTGGGC-CGCTCCAGGTGGGCCTC a score=6320.0 s hg17.chr17_random 2049918 30 + 2618010 GGGCATTAGGAATTGGCTGCAGGCATGGAC------------- s panTro1.chrUn_random 4095797 30 + 240967748 GGGCATTAGGAATTGGCTGCAGGCATGGAC------------- s mm5.chr11 121456911 30 + 121648857 GGACATCAGAAATTAACCACAGAAGCAGAC------------- s rn3.chrUn 69994643 42 - 75822765 GGACATCAGAAATTAACTGT-GAAGCAGATGCTTGTCCTCGAC a score=70415.0 s hg17.chr17_random 2049948 721 + 2618010 AGTGGACACGGAGCAGGGAGGCCCAACGC---------TACCTGCC-----TACAGGGGAGC---------------------------------------CTGGGACGTGGGCT--------TCTGTTCCGCAGCCTGCAGAGCCTGCTGGAGCC----GGGCTGGTGTCG----AGGACCACCTGGCGCCCAGC-AGGTCCCCCTGCAGCTTGTTTTCTGGGAAAgcaatggactgaatgcctgtgtccccccaaattcatgtgttgaaatcaaccctcaaggtgatggcatttgggggtgcagcctttaggaggtgatggggtcatgagggcggaggctcatgaacggggttactgcccttacagaagaggcctaagggatgcccctctcttcctccac------atggcacagtgagaaggtggctgtctgcaagccaggaagagggccctcaccagaacccaactcagctggt--accgtctgcagcttccaaactccagaactgtgagaaataaatgtgtg----ttgttattaaatcgtct--tggtgttttg------ctagagaagccctagctaaggca----------CCTTCCGTTCTCCCACCTCTTCCT------CCTGGGGCAAGGCCTGGGTGAGGCCCCGTAAGCCAGCGAGTGGCTTCAAGCTGGTGGCACAGCCAGTTTCA-AGCCGTCTCTGGGGTACGTGGCACACAC-------------AAGAGCCGGGCTGTGTA-ACCTGCAGCCCACGGCTCCACAGAGGGGCTGTGCCGCCCAGGGACACTTTCTCTGCAGGTCTCTGGCTTCAACCCTCCTTGC s panTro1.chrUn_random 4095827 721 + 240967748 AGTGGACATGGAGCAGGGAGGCCCAACGC---------TACCTGCC-----TACAGGGGATC---------------------------------------CTGGGACATGGGCT--------TCTGTTCCGCAGCCTGCAGAGCCTGCTGGAGCT----GTCCTGGTGTCG----AGGACCACCTGGCCCCCACC-AGGCCCCCCTGCGGCTTGTTTTCTGGGAAAgcaatggactgaatgcttgtgtccccccaaattcatgcgttgaaatcaaccctccaggtgatggcatttgggggtgcagcctttatgaggtgatggggtcatgagggcggaggctcatgaacggggttagtgcccttacagaagaggcctaagggatgcccctctcttcctccac------atgacacagtgagaaggtggctgtctgcaagccaggaagagggtcctcaccagaacccaactcagctggt--accgtctgcagcttccaaactccagaactgtgagaaataaatgtgtg----ttgttattaaatcgtct--tggtgttttg------ctagagaagccctagctaaggca----------CCTTCCGTTCTCCCACCTCTTCCT------CCTGGGGCAAGGCCTGGGTGAGGCCCCATAAGCCAGCGAGTGGTTTCAAGCTGGTGGCACAGCCAGTTTCA-AGCCGTCTCTGGGGTACGTGGCACACAC-------------AAGAGCCGGGCTGTGTA-ACCTGCAGCCCACGGCTCCACAGAGGGGCTGTGCCGCCCGGGGACACTTTCTCTGCAGGTCTGTGGCTTCAACCCTCCTTGC s rn3.chrUn 69994685 754 - 75822765 AGCTGCCGTTTACAAGGCATGCTCACAGCAGCAAAGCATACCTCTCAGCAGTGCAAAGGAACCCCATCCTACTCCATATGTGAAAAGCCATGATCAACTCTCCTGGCTGTAGGCCAAGCTCAGTTAGTCCTGTAGTGTATGAAATTCCTTGAAGTTTTCAGGGCTTGGGTAGAATTAGCATCCTCTAGTCTTCAACTAAGCCTGCCTCCGACTTGTTCTCTAGGTTGG---------------------------AAATTCATATGTTGAA--------TCACAG-------------------AGCTTTT----GATAGTAAGGTAGTAGGGGCTCA-----ATGAGTGGAATTAGTGTCCTTGT-GAAGAGGCTCCAGAGAATTCCCTTGCTTCCTTGACCAAATTAGGATACTGTGAAATGGCACCT-CCTATAAGCTAAAAAGGCGGCTCACTCCAGAACCCACACGCATTGGTTCATAGCCCCAGACATACACCTTGCAGAGCT-TGATAAATAAATTATTAGCATTTGTCAATGGTTCAGCTGATAATATTTTGTTATGACTGGACGTGAGTCTGATAAGACAGGAGTCTTCTCCATCCTTTGCCCTGGCCCTTTCTGACATGTCCAGGGCAAGGTTTGCGTACAG--------------AAGTGG----GAGTTCCTGGCACAGCCGGTTTTAGAGCTGCATCTGGGATGCTTGAGGCAGATCTGGACCCTTGAAAACTGCCATGTGGCGCATACCCACACTCCACCTTATTGGAGTTGAGTAGTGCCGTACCA----ATGTTCTTTGAGTGGCTCCAGTCCACACCCTCCTTGC a score=127889.0 s hg17.chr17_random 2050669 1387 + 2618010 CGCTTGTGTGCCGGGGTGCACTTTTGGGGCAGCTGGCAGCCTTTTAGCCTCAGCTCCTCTGTGGGGACAGAGCCAAGACTGATCGCAAGGCCAAGACCTAGGAGTCCAGGGGAGGCCCTCGGCTCTGTCCTTCCTGCCGGCCCGGCTCCTGCTCATTCCACTAACAGGCATCTCCCTGATGAAATCCTCGAGAGGTTAGTCC-TGTCTCGGCGGCAGCTGCTCAGAGCACCGGGCTATCCTCTGGCCCCTCCGAAAGCATGGCCCTGAATCACTGGGGGAGCCTCACCAGGCAGAGATGGCTCATCCCCATGGACCTGGGCCCCCGGGTCCCGGCCCCCCTGGCCTGGCCAGCACCTGACGCTGCTGTGAGGAGCATAT-GGTCAAATCTGCACCTGCTGCCGGCCACAAGGGAGGAGCAAGTGCTGAGTGCCCCTGGGCCACCTGACCAAGAGGTGTCCTTGTGTCCCTTGCCCCCTGCCCCAGACGTGCCTCTCGGGACCTTCAGGCCACGGTGCTATTTATTACCCACTTGAGGACAAACTCGGAGCCAACCCACAGGCCTATGTGGCAGGACTGGCCACACCTGGGCCCAGACACGCTGCAGCTTTGCGACTCCGGCCACAGATCCCGGGGACTGACTGGGGTTGCAGGCCTTGGGCCAGCCCCTGAACCTGGCCGtgcctcacagagctttggtggggatgacatgagtggatacattcaaagggtttaaaacggcgcctggcacaCTGCATCCGTGCTGCTGTGATTCTATTTGAGTTGGTGCTTTCCAGATCGGTTTCTCTCTGTGACGATCCAGAATCTGTGTTCCGTGCCCAGGCCCAGGAGTGAGGAGAGGCCAACAGGGAGGAGAGGAGGGCTCCTGCCTCAGGGAAACGGAGCCCGTGCAGGAGGTCCTGGCCGGGCAGCATGGGGCTCAGGACGGATGCCCGTGGCGGGTCACCCCCCACAGCAGTCACAGCCGGGGGGCCCCCAGGCCTCAGGGTTCCACGGAGCAGGTTGGGCAAGTGTGTTAGGACCATCAGCAACCTGTGTGCAGCCAAAGACAGCAAGGACAGAGCCAGGAACTCCGGCTTCTGCCTCCTCTCCCTGTGCCGCCTCTCCTGGCTGAGGGCTGGAGAGAGAAGGCCACGGAGCGAGAGTGGCAGCCCTCAAGGGACGCAGGCTCAGTGCTGGCTGCAGGGGAGCTGCGAGGGCCTCAGGCGAGGGAGCTGCGAGGAGGCCGCTGCGGCCCAGTCCGTCTGTTCCCTGAGCTGATGACAAACCGTTTGTTTTCTGTGAAAGGTGCTTTACTGGGAGAAAGGCTAACAGTGAGGCAGCTCTGAAGTGCTTTTATTCTCAGTTTCCTCTGTCGCTTAAAGACCAC s panTro1.chrUn_random 4096548 1388 + 240967748 TGCTTGTGTGCCGGGGTGCACTTTTGGGGCAGCTGGCAGCCTTTTAGCCTCAGCTTCTCTGTGGGGACAGAGCCAAGACTGATCGCAAGGCCAAGACCTAGGAGTCCAGGGGAGGTCCTCGGCCCTGTCCTTCCTGCCGGCGCGGCTCCTGCTCATCCCGCTAACAGGCATCTCCCTGATGAAATCCTCGAGAGGTTAGTCCCTGTCTCGGCGGCAGCTGCTCAGAGCACCGGGCTATCCTCTGGCCCCTCCGGAAGCATGGCCCTGAAGCACTTGGGGAGCCTCACCAGGCAGAGGTGGCTCATCCCCATGGACCTGGGCCCCCGGGTCCCGGCCCACCCGGCCTGGCCAGCACCTGACACTGCTGTGAGGAGCATATTGGTCAAATCTGCACCTGCTGCTGGCCACAAGGGAGGAACAAGTGCTGAGTGCCCCTGGGCCACCTGACCAAGAGGTGTCCTTGTGTCCCTCGCCCCCTGCCCCAGACGTGCCTCTCGGGACCTTCAGGCCACGGTGCTATTTATTACCCACTTGAGGACAAACTCAGAGCCAACCCACAGGCCTATGTGGCAGGACTGGCCACACCTGGGCCCAGACACGCTGCAGCTCTGTGACTCCGGCCACAGATCCCGGGGACTGACTGGGGTTGCAGGCCTTGGGCCAGCCCCTGAACCTGGCCGtgcctcacagagctttggtggggatgacgtgagtggatacattcaaagggtttaaaacagcgcctggcacatTTCATCCGTGTTTCTGTGATTCTATTTGAGTTGGTGCTTTCCAGATCG-TTTCTCTCTGTGACGATCCAGGATCTGTGTTCCGTGCCCAGGCCCAGGAATGAGGAGAGGCCAACAGGGAGGAGAGGAGGGCTCCTGCCTCAGGGAAACGGAGCCCGTGCAGGAGGTCCTGGCCGGGCAGCATGGGGCTCAGGACGGATGCCCGTGGCGGGTCACCCCCCACAGCAGTCGCAGCCGGGGGGCCCCCAGGCCTCAGGGTTCCACGGAGCAGGTTGGGCAAGTGTGTTAGGACCATCAGCAACCTGTGTGCAGCCAAAGACAGCAAGGACAGAGCCAGGAACTCCGGCTTCTGCCTCCTCTCCCTGTGCCGCCTCTCCTGGCTGAGGGCTGGAGAGAGAAGGCCACGGAGCGAGAGTGGCAGCCCTCAAGGGACGCAGGCTCAGTGCTGGCTGCAGGGGAGCTGCAAGGGCCTCAGGCGAGGGAGCTGCGAGGAGGCCCCTGCGGCCCAGTCCGTCTGTTCCCTGAGCTGATGACAAACCGTTTGTTTTCTGTGAAAGGTGCTTTACTGGGAGAAAGGCTAACAGTGAGGCAGCTCTGAAGTGCTTTTATTCTCAGTTTCCTCTGTTGCTTAAAGACCAC a score=81150.0 s hg17.chr17_random 2052056 535 + 2618010 TTCACATTTCTTTTTATTTACACGGATAAGGATGGATGAGCTTGATGTTCTCCCACCTTCCTCTTGGCGCAGCTTTCTTCTCCTCCCTCTTGGAAGGACTTTCGCTTTTTATTATTATTTTAAACGTTTTAAACAACAATCTCCCAGGCGCCCAACAAAGGCGCTACTGGTGCCAG---GTGCTTGGCGCCTGCCTTCCCTGACAATACACGGGCCACATCCTCAGCCCCCCC----GGCTGGTGGCCTGTGACT---------------CCCGCCCCAGTGCCAGACTCTTTATTTCATTTTGTTGGCATGGTGGAAAACACTGGCTTTTCAGGAGGTGACCCTGCTTTCAAGAGCCAACCTTTGGAGAAAACAGGACACAGAAGCTGGTTTTGGCTGTGAGGCCCTGACGCACGGATGCAGGTTGCACAGGCCCCACGTCCTC-CTCACAGCCTGCCTTTCCAGCTGGCTCAGGAGTCCCTGCGGCTTGAGTTTATCCAGAAGCTTCCCTTTCTCCCGCAAGAG-----------------CTACTCGTGGAAGAGACCAGTTTTAAGTGATT s panTro1.chrUn_random 4097936 535 + 240967748 TTCACATTTCTTTTTATTTACACGGATAAGGATGGATGAGCTTGATGTTCTCCCACCTTCCTCTTGGCGCAGCTTTCTTCTCCTCCCTCTTGGAAGGACTTTCGCTTTTTATTATTATTTTAAACGTTTTAAACAACAATCTCCCAGGCGCCCAACAAAGGCGCTACTGGTGCCAG---GTGCTTGGCGCCCGCCTTCCCTGACAACACACGGGCCACATCCTCAGCCCCCCC----GGCTGGTGGCCTGTGACT---------------CCCGCCCCAGTGCCAGACTCTTTATTTCATTTTGTTGGCATGGTGGAAAACACTGGCTTTTCAGGAGGTGACCCTGCTTTCAAGAGCCAACCTTTGGAGAAAACAGGACACAGAAGCTGGTTTTGGCTGTGAGGCCCTGATGCACGGATGCAGGTTGCACAGGCCCCACGTCCTC-CTCACAGCCTGCCTTTCCAGCTGGCTCAGGAGTCCCTGCGGCTTGAGTTTATCCAGAAGCTTCCCTTTCTCCCGCAAGAG-----------------CTACTTGTGGAAGAGACCAGTTTTAAGTGATT s canFam1.chrUn 6364469 529 + 91062872 TTCTTGTTTCCTTCCCTCT----GGCTAAGGCTGGACGCGGTGGA-GTTTCTCCAGATTCCTCTCAGTACCGCTCCCTTCTTTGCTTTCTTGGAA-GACCCTCTGTTATCATTACTA-TTTAAACATCTTTAACAACAGTCTGACAAGTGCGTTAGCCCG--GCTGCCGGTGCCGGGCCGCTCTTGG-GCCTGTGCTCC--------GCCCCGGC----TCCCCAGGCCCCCCCCTGATCCGGCGGCCAGCAACCAGGCCAGGGACAGCACAGGCCCAGGTGCCAGACTCATTATTTCATTTTGTCAGCATCGTGGAAAACATTTGCTTTCCGGGAGGTGACCCTACTTTCAAGAGCCAGCCTTTGCAGAAAACAGGACGGGAAAGCTGGTTTTGGCTTTGAGGCCCAGA--CAGGGCTG------------------TGTCCTCACTTGCGGCCTGCAGCTCCATCT-GCTCAGGCGCCCCACAGGCTCAAGTTCACCCAGGG---TTCTCTTCTCCCATGACAGCCATGCCCAGCTGGCCCCTGCTGGCGAAAGTGCTGAGTCTGAGCTGACT a score=17144.0 s hg17.chr17_random 2052591 186 + 2618010 TTGCCGCATTTGACCTTTTGGGTATTTCAGTGAAAACAAAACCTCTTCCACAATGCAAAAACTTGGATTCAACAACCATCGATTATTCCCTCTGGGCACCTCACAGAGCTGGGGTGAAGGCCACCTGGGGTTCACGGGACTCACCGTTGGGTGTTGGCATTGAGTCTTGTagagcagggactggca s panTro1.chrUn_random 4098471 186 + 240967748 TTGCCGCATTTGACCTTTCGGGTATTTCAGTGAAAACAAAACCTCTTCCACAATGCAAAAACCTGGATTCAACAACCATCGATTATCCCCTCTGGGCGCCTCACAGAGCTGGGGTGAAGGCCACCTGGGGTTCACGGGACTCACCATTGGGTGTTGGCATTGAGTCTTGTagagcagggactggca a score=6683.0 s hg17.chr17_random 2052777 43 + 2618010 aagtcagagcacagggcctggtgtgaa-tcccacctccttcccc s panTro1.chrUn_random 4098657 43 + 240967748 aagtcagagcacaggacctggtgtgaa-tcccacctccttcccc s rn3.chrUn 69996849 44 - 75822765 AAGTCAGAGTGTGTGGCCTGACTTCAATTCTCACCTCTGTCCGA a score=53897.0 s hg17.chr17_random 2052820 374 + 2618010 gactggcca----ggggacctgcag-------caagcg---------------ctcagcatctctgagccttagtttcttcctctgcacggggagctcagcggtggcacccacttcatT--TCAGTGGTGCCCCCTTAGTCATGGATGATATAAAAATG------------TTGCCACAA----AAGTAACCAAGACAGGTCgggatgagatatgcacgacttctaaacccaattagggattaa--ttaggaacatacaataaattcc-cccaattca--taagaaaaagacaggaactccggtggatgaatggacagatgatattaataggcaattt------------------------------------------------------------tcagaggaat-----ttaaagcagcagacagatccatCATACCTGCCAGACAGGTGTGCGCTGCCTGGTGTGACCCTGCTGGAGGCAGTG s panTro1.chrUn_random 4098700 374 + 240967748 gactggcca----ggggacctgcag-------caagcg---------------ctcagcatctctgagccttagtttcttcctctgcacggggggctcagcggtggcacccacttcatT--TCGGTGGTGCCCCCTTAGTCATGGATGATATAAAAATG------------TTGCCACAA----AAGTAACCAAGACAGGTCGGGATGAGATATGCGCGACTTCTAAACCCAATTAGGGATTAA--TTAGGAACATACAATAAATTCC-CCCAATTCA--TAAGAAAAAGACAGGAACTCCGGTGGATGATTGGACAGATGATATTAATAGGCAATTT------------------------------------------------------------TCAGCGGAAT-----TTAAAGCAGCAGACAGATCCATCATACCTGCCAGACAGGTGTGCGCTGCCTGGTGTGATCCTGCTGGAGGCAGTG s rn3.chrUn 69996893 393 - 75822765 GACTGTCCA----GGGAA------------------------------------GCAGTGTCTCTGAACACAAGTTTATTTTTCTGAAAATTGGGCTTAGCGAAGGTATTTACTTTGT-----------------TTATTCACTGTGACTAAGAAAATGGTATGGAAGCCTTTTTCACAACTTTAATTGTACGTGGCAAGTATGG-CAGGATATTTCTGACTTCTAAACCTTATCAAT--TTAATGTTTAGGATATACAAGTCATTTC-TTCTATTTATTTAAAACAAAAAAAGCAACTTCAAGGGAAAGATGTATAACTGAGACAAACAGGCAGTGTGCATGTGGTTCCTTATCTGTGGGG---------------------------------TTATCAGTGAAATTCAAGTTAAAATAGCAGTAAGA-CCAGTGTTCCTGCCAGAAGAAGCTATGATGTCTGGTGGGAACCTGCTAGAGACAGCG s canFam1.chrUn 6365467 440 + 91062872 GACAAGCCAGGACGGGGACCTGCAGGGGCGTACCAGCGGGCCTGACGGGCGtacccggcctctgcgatactcagtttcttcatttgcaaagtggacttaggggtggtgcccactttattggctcatggggacccaatag----ggtgaCTGTGGAAGTG------------TTGCCACAAAATTAACTGAGCAGGACAGATCAGGACAAGGTGTCTACAGCTCCTAACACTAGCCAGAGACTGATACAGTGAATGCACAAGAGCTTCcttccaaccta--gaagaaaaagaca--aact--aacaga-aaatgggcacatcatatgaataggcgattt---------------acagaagggccaaaggccacgaatgatcctcagacacggcggttatcagagggacccaacctagagcgacagggagatgctttgcacccacAGGTCGGATGTGTGAGGCCCATGG----------GGAGGCTGTG a score=71120.0 s hg17.chr17_random 2053194 773 + 2618010 AGGGCAGCAGGGATGGCAGCACCTGGCGGCTAGGACTCGGCCAAGCTGAAGTTCATGCACCCGAGAGCCACAgcc---tctgccccagacagggatcagaagtagatttacactcccctctgaaagaacaacaaca----------------------------------gagaaaacacacaaagc------------------------acatttttcaaaaccctgggcatcggT--CGCCCGCACTCCGCCACCGTGAGTACACTGCGTGGACCCAGAAC--------CTTGACTCCTCTTGTTTCTGT------------------GAGGCTGGG---ACTTACGGGTGATGTG-CAGAGGGGCCAGAGCTGGTATTTAGAGAG-----------------GAAATTTGGGGGCAATTAAAATAGGGGTTCTCGACAA--------GTCTG--------------------GCCTCCCCGAGCCCAGGA-----------------------------------------------------------------------CCACCATAGAGCTCTGAACAGAGGAATGAG--------CTGGTCGCCGTGAG-------AGGCGGCTTTG------CCAGAGCTGGGCCAGGGGGAAAC-----------------------------------AGCCCGTTCAATCAGGACTTGGGGGGTGGGACTGGCTTGGGGTTGGTTGGTGTGAGGCGGGGAGAAGGAGATCCGGAAGAGTCCTCGACGGCTGACATTCACGTCACtgga----------gggggccgattggaggggtcagcgatgggctcaattttgtgccctcttgagttcgaggtgtctgtggggcctccagctacagacatTTGTGTGTTGGAAAAGCTCTGC----------AAACCCTGAAACCTGGGGAGGCCCCTGGTCTTG--TCTGATGGTTGTAGGTCATGGTGACCTCCACTAGG----GCATCTTCACTCCCCTGAGCCACACTGAGACACTGGGTTTGATTGAGACTCT s panTro1.chrUn_random 4099074 774 + 240967748 AGGGCAGCAGGGATGGCAGCACCTGGCGGCTAGGACTCGGCCAAGCTGAAGTTCATGCACCCGAGAGCCACAGCC---TCTGCCCCAGACAGGGATCAGAAGTAGGTTTACACTCCCCTCTGAAAGAACAACAACA----------------------------------GAGAAAACACACAAAGC------------------------ACATTTTTCAAAACCTTGGGCATCGGT--GGCCCGCACTCCGCCACCGTGAGTACGCTGCGTGGACCCAGAAC--------CTTGACTCCTCTTGTTTCTGT------------------GAGGCTGGG---ACTTACGGGTGATGTG-CAGAGGGGCCAGAGCTGGTATTTACAGTG-----------------GAAATTTGGGGGCAATTAAAATAGGGGTTCTTGACAA--------GTCTG--------------------GCCTCCCCGAGCCCAGGA-----------------------------------------------------------------------CCACCACACGGCTCTGAACAGAGGAATGAG--------CTGGTCGCCGTGAG-------AGGCGGCTTTG------CCAGAGCTGGGCCAGGGGGAAGC-----------------------------------AGCCCGTTCAGTCAGGACTTGGGGGGTGGGACTGGCTTGGGGTTGGTTGGTGTGAGGCGGGG---AGGAGATCGGGAAGAGTCCTCGACGGCTGACATTCACGTCACTGGA----------GGGGGCCGATTGGAGGGGTCAGTGATGGGCTCAATTTTGTGCCCTCTTGAGTTCGAGGTGTCTGTGGGGCCTCCAGCTACAGACATTTGTGTGTTGGAAAAGCTCTGC----------AAACCCTGAAACCTGGGGAGGCCCCTGGTCTTG--TCTGATGGTTGTAGGTCATGGTGACCTCCACTAGGGCACGCATCTTCACTCCCCTGAGCCACACGGAGACACTGGGTTTGATTGAGACTCT s canFam1.chrUn 6365907 1015 + 91062872 -CCACCGTGGAGAT-GCCGCA-CTGGTGACCCAGAGTGACCCA-----------------CTGGGAGCCAAAGCCCTGTTTCTGCAGGGTGAGGAGCAGGGCGGGACTGAC-CCCTCTCCTGAAAGAGGGACAACAATGCAGGTGAGCCCCGTGGCTGCCCAGCCCAGGCAGGAGGGTCCAGCAAGCCCAGGCCGAGGTTCGCAGGATGGAGCACGTTGCAGCAGCTGGGGCATCCGTGCGGGCGGCACACAG-CATCTTGGAGAAGCTGA--AGACGCAGAGCACAGAGGGCATGGCACCGCTTCTGTCCGTCGGAAACGTGTGTTCACAGCAGCTGAGCATATTTGCAGCAAACATGTCAGAGCAGCCGACTCTGGGGAGGAGAGGGCATTGGGCCTGGGGCGTGAGACCGAGGGGCATCCGCAGCAGAGGCCAGCACTGACCGCCTTGGTCTGGAACCGAGCACGGTGGCCCTGCCCCCACGGGAACAGGAGAGGGCAAGGGAGTGCCTGTCCTGGGGCTCACGGCAGGGTCAGGATGAGGGACGCCTCTGGAGTGTGGATGCTGCCAGAGTCCTCTAGACAGGGCACTGGGCCATGCGACTGAGCTCTGTGGAGGCACGTGGGCGGCTTGGCCTGTCCCTGAGTGGGAGTGGGGGGATGCGCTCACTGCTCGGCCCGGGGCGCCGCGGCGAGGGGAGCACGTTCTAGAGGGA---GTGGGGCGAGCCTGGCTGGGGGCTGACCCACCTGGGGTGCAGAGAGGAGAGGCTGCCCGCGGTCTCCAGGTTGCTTCTTCACGTAACTGGATGGCAGTGGGAGGGGCAGTTTCCGGGGGACCGAGATGGATCCCA-TTTGTGTCATCATGAACTGGA---------GGGGCCTCCAGCTGGAGAGATTTGTGCTGTGGGGGAGATCTCTGGGGCCAGTGGAACCCTAGAGCACAGGGAGGCCCCCACTGCTGTCTCTGACAGCTGTGGGTCCTCCTA---TCCACT---------GTCCTACTTCCCTCATGTCGCCCCGAGACTGGGGGCTTGGTCAGGATGCT a score=22477.0 s hg17.chr17_random 2053967 242 + 2618010 CCAGCCATGATGACAAGGGTTCAGCTCTGGTAAGCCATGTGCAGCCTCCCCCTCAAAGACCAGATGCCACCCACCCAGGGCCCCAAACATCCTGGCCCAGCGGGTCTGCTCACTCCTTGATGAGCTTACCTTCCTCGATCACCCCAACATGCAGAGAGAAACCCTTTGCCCTTCTTGGAGGGAGGGGTCAGATGCTCACTCTGCAGATCCCTGAAGACAAGCAGATGCTCCCTGAGTGGCCT s panTro1.chrUn_random 4099848 242 + 240967748 CCAGCCACGATGACAAGGGTTCAGCTCTGCTAAGCCATGTGCAGCCTCCCCATCAAAGACCAGATGCCACCCGCCCGGGGCCCCAAACATCCTGGCCCAGCGGGTCTGCTCACTCCTTGATGAGCTTACCTTCCTCGATCACCCCAACATGCAGAGAGAAACCCTTTGCCCTTCTTGGAGGGAGGGGTCAGATGCTCACTCTGCAGATCCCTGAAGACAAGCAGATGCTCCCTGAGTGGCCT a score=4059.0 s hg17.chr17_random 2054209 51 + 2618010 GTCTGAGGGATTCAGCTGGCAGCTGGGTATCCTCATGTGTGCAGTTCCTGA----- s panTro1.chrUn_random 4100090 51 + 240967748 GTCTGAGGGATTCAGCTGGCAGCTGGGTATCCTCATGTGTGCAGTTCCTGA----- s fr1.chrUn 39932312 52 - 349519338 GGCTGGTGGGTCCAA--GGCTGGTGGG--TCCACGGCTGGTGGGTCCACGGCTGGT a score=16210.0 s hg17.chr17_random 2054260 98 + 2618010 GTGAGCACTGGTGGTG----GGGAACAGGCCTGGCTTTCCATGCCTGGGGGGTGCAGGGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAGGGGGGAT s panTro1.chrUn_random 4100141 98 + 240967748 GTGAGCGCTGGTGGTG----GGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAAAAGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAGGGGGGAT s rn3.chr7 71951234 102 + 143082968 GTGAGCCTGGAGGGTGCCCAGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCCAGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCCAGGGGGC s fr1.chrUn 39932364 90 - 349519338 GGGTCCACGGCTGGTG----GGTACAAGGCTGGTGGGTCCACGGCTGGTGGGTCCAAGGCTGGTGGG--------TCCACGGCTGGTGGGTCCACGGCTGGT a score=11169.0 s hg17.chr17_random 2054358 69 + 2618010 GGGCCTGGCTTTCCACGCCTGGGGGGTGCAGGGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s panTro1.chrUn_random 4100163 69 + 240967748 GGGCCTGGCTTTCCATGCCTGGGGGGTGCAAAAGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s rn3.chr7 71951336 69 + 143082968 ATGCAGTGCACTGTGAGCCTGGAGGGTGCCCAGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCC s fr1.chrUn 39932454 53 - 349519338 GGG--------TCCACGGCTGGTGGGTACAAGGCTGGTGGG--------TCCACGGCTGGTGGGTCCAA a score=11966.0 s hg17.chr17_random 2054427 83 + 2618010 GGGGGATGGGCCTGGCTTTCCATGCCTGGGGGGTG--CAGGGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAGGGGGGAT s panTro1.chrUn_random 4100156 83 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTG--CAAAAGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAGGGGGGAT s rn3.chr7 71951405 83 + 143082968 AGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCCAGGGGGCATGCAGTAGACTGT--GAGCTTGGAGGGTGCCCAGGGGGC s fr1.chrUn 39932507 67 - 349519338 GGCTGGTGGG--------TCCACGGCTGGTGGGTA--CACGGCTGGTGGG--------TCCACGGCTGGTGGGTACAAGGCTGGT a score=2621.0 s hg17.chr17_random 2054510 25 + 2618010 GGGCCTGGCTTTCCACGCCTGGGGG s panTro1.chrUn_random 4100163 25 + 240967748 GGGCCTGGCTTTCCATGCCTGGGGG s rn3.chr7 71951488 25 + 143082968 ATGCAGTGCACTGTGAGCCTGGAGG s fr1.chrUn 39932574 17 - 349519338 GGG--------TCCACGGCTAAGTG a score=766.0 s hg17.chr17_random 2054535 6 + 2618010 GTGCAG s panTro1.chrUn_random 4100188 6 + 240967748 GTGCAA s rn3.chr7 71951513 6 + 143082968 GTGCCC a score=4733.0 s hg17.chr17_random 2054541 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA s rn3.chr7 71951519 38 + 143082968 AGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCC a score=4733.0 s hg17.chr17_random 2054579 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA s rn3.chr7 71951557 38 + 143082968 AGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCC a score=4733.0 s hg17.chr17_random 2054617 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA s rn3.chr7 71951595 38 + 143082968 AGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCC a score=4733.0 s hg17.chr17_random 2054655 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA s rn3.chr7 71951633 38 + 143082968 AGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCC a score=10742.0 s hg17.chr17_random 2054693 83 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAGGGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAGGGGGGAT s panTro1.chrUn_random 4100156 83 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAAAAGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAGGGGGGAT s rn3.chr7 71951671 83 + 143082968 AGGGGGCATGCAGTGCACTGTGAGCTTGGAGGGTGCCCAGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCCAGGGGGC a score=2320.0 s hg17.chr17_random 2054776 31 + 2618010 GGGCCTGGCTTTCCACGCCTCGGGGGTGCAG-- s panTro1.chrUn_random 4100163 31 + 240967748 GGGCCTGGCTTTCCATGCCTGGGGGGTGCAA-- s rn3.chr7 71951754 33 + 143082968 ATGCAGTGCACTGTGAGCCTGGAGGGTGCCCAG a score=3048.0 s hg17.chr17_random 2054807 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG-- s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA-- s rn3.chr7 71951787 38 + 143082968 GGGGCATGCAGTAGACTGT--GAGCCTGGAGGGTCCCCAG a score=3236.0 s hg17.chr17_random 2054845 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG-- s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA-- s rn3.chr7 71951825 38 + 143082968 GGGGCATGCAGTAGACTGT--GAGCCTGGAGGGTACCCAG a score=3052.0 s hg17.chr17_random 2054883 30 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGG s panTro1.chrUn_random 4100156 30 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGG s rn3.chr7 71951863 28 + 143082968 GGGGCATGCAGTAGACTGT--GAGCCTGGA a score=1750.0 s hg17.chr17_random 2054913 8 + 2618010 GGGTGCAG s panTro1.chrUn_random 4100186 8 + 240967748 GGGTGCAA s rn3.chr7 71951891 8 + 143082968 GGGTACCC s canFam1.chr3 8367353 8 + 95079643 GAGGGCAG a score=2632.0 s hg17.chr17_random 2054921 38 + 2618010 GGGGGATGGG---------CCTGGCTTTCCACGCCTGGGGGGTGCAG--- s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGG---------CCTGGCTTTCCATGCCTGGGGGGTGCAA--- s rn3.chr7 71951899 38 + 143082968 AGGGGGCAGG---------CAGTAGACTGTGAGCCTGGAGGGTGCCC--- s canFam1.chr3 8367361 49 + 95079643 -GAGAGCAGGGGCCTCACCCCGGCCCCCGCTCCCCCGGGGACTGGAGCAG a score=2994.0 s hg17.chr17_random 2054959 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA s rn3.chr7 71951937 38 + 143082968 AGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCC s canFam1.chr3 8367410 32 + 95079643 GGCGCAGACGCCCAGCGC----GGCCTCAGGGGCAG-- a score=1624.0 s hg17.chr17_random 2054997 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA s rn3.chr7 71951977 36 + 143082968 GGGGCATGCAGTGGACTGT--GAGCTTGGAGGGTGCCC s canFam1.chr3 8367442 28 + 95079643 GGAGGACAGCTCCGCC-----GCACAGGGACAG----- a score=3062.0 s hg17.chr17_random 2055035 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA s rn3.chr7 71952015 36 + 143082968 GGGGCATGCAGTGGACTGT--GAGCCTGGAGGGTGCCC s canFam1.chr3 8367470 31 + 95079643 GGGGTTCGCCTCTAAC-----ATGGTAGGAGGGCGG-- a score=2613.0 s hg17.chr17_random 2055073 38 + 2618010 GGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTGCAG s panTro1.chrUn_random 4100156 38 + 240967748 GGGGAACGGGCCTGGCTTTCCATGCCTGGGGGGTGCAA s rn3.chr7 71952053 36 + 143082968 GGGGCATGCAGTGGACTGT--GAGCCTGGAGGGTGCCC s canFam1.chr3 8367501 26 + 95079643 GAAAAATGAGCC------CCTGAGGCGGGGGG------ a score=11045.0 s hg17.chr17_random 2055111 73 + 2618010 --GGGGGATGGGCCTGGCTTTCCACGCCTGGGGG-GTGCAGGGGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTG s panTro1.chrUn_random 4100156 73 + 240967748 --GGGGAACGGGCCTGGCTTTCCATGCCTGGGGG-GTGCAAAAGGGATGGGCCTGGCTTTCCACGCCTGGGGGGTG s rn3.chr7 71952089 73 + 143082968 --AGGGGGCAGGCAGTGGACTGTGAGCCTGGAGG-GTGTCCAGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTG s canFam1.chr3 8367527 76 + 95079643 GGGGCGGAGGGGGCTGAGCCCCGATCCCTGGGGGCGCTCCGGGCGGAGGGGGCTGAGCCCCGATCCCTGGGGGGGC a score=9020.0 s hg17.chr17_random 2055184 85 + 2618010 CAGGGGGGATGGGCCTGGCTTTCCACGCCTGGGGGG-GTGCAGGGGGGATGGGCCTGGCTTTCCACACCCGGGGGGTACAGCGGGG s panTro1.chr19_random 2676941 67 + 57627672 CAGGGGGGATGGGCCTGGCTTTCCATGCCTGGGGGG-GTGCAGGGGGGATGGGCCTGGCTTTCCACAC------------------ s rn3.chr7 71952162 84 + 143082968 CAGAGGGGGCATGCAGTGCACTGTGAGCCTGGAGGGTGCCCAGGGGGCATACAGTGGACTGTGAGCTT--GGAGGGTGCAGAGGGG s canFam1.chr3 8367603 85 + 95079643 CCGGGCGGAGGGGGCTGAGCCCCGATCCCTGGGGGG-GCTCCGGGCGGAGGGGGCTGAGCCCCGATCCCTGGGGGGGCCCGGGCGG a score=443.0 s hg17.chr17_random 2055269 9 + 2618010 ATGGGCCTG s canFam1.chr3 8367688 9 + 95079643 AGGGGGCTG a score=2983.0 s hg17.chr17_random 2055278 44 + 2618010 TATTCCACACCTGGGGGTGTATGTCCACCACCCAGATGCCACCT s panTro1.chr19_random 2677008 34 + 57627672 ----------CTGGGGGTGTATGTCCACCACCCAGATGCCACCT a score=31872.0 s hg17.chr17_random 2055322 186 + 2618010 CTGTGTCATTCCTGGAGGGCATTCGGGCATCACCTGAGGGTGGGGAGCACTGCCCTGACCCACATGACCCCCAGCAGAAGCTGCCACTGTCGGCCCTGGGCTCCGGGTGTCAGCGTGGCGCTCTGGGCTTTTCCCACACTGGGGGGCCATTTCAGGATGTGGATCCCTCCAGGAAGGGCTTGCTGA s panTro1.chr19_random 2677042 186 + 57627672 CTGTGTCATTCCTGGAGGGCATTCGGGTATCACCGGAGGGTGGGGAGCACTGCCCTGGCCCACATGACCCCCAGCAGAAGCTGCCACTGTCGGCCCTGGGCTCCGGGTGTCAGCTTGGCGCTCTGGGCTTTTCCCACACTGGGGGGCCGTTTCAGGATGTGGATCCCTCCAGGAAGGGCTTGCTGA s canFam1.chrUn 59452144 174 + 91062872 CTCTGGCATCCCGGAGGGACACTTGGGGGGCACCTGCAGGTGTGGAGAGCTGCCCTGACCCGCATATCTCCCGGTGGCGGTTGT--------GCCCTGCGCCCCAGG-GCCAGCATGGCCTTCTGGTCTTTCCTGCCCC---GGGGCAGTTTCAAGATGTGGGTTCCTCCAAGAAGGGCCCGTTGA a score=32975.0 s hg17.chr17_random 2055508 365 + 2618010 GTGGCTGCTGTTTGCTGGGATGGGTGAGGGGTAGACAACAGGCACTCAGGAGCCATGGTTGGGACAGAACTTATGTTTGTCAGCCACCTTGGAGGGGCGACCTGGAGAGCTCGGACAACCTTGCAGCACCCACCAGAGAGCTTAGCACCAGGACCCAGCAGAGCTCTCCCACGTGCACACAGACTCACTGCTCGTGTGTGAGAAGGGGAATAAGTGTGACTGAGCCTTCTGGAAGTTAGGGCCTAGCACAGAGGGTCCCAGATGGCCCGGAGAACCAGGTCCTGTGCAGCTATCCAGAGAAGGTCCAGTCACCAGAGACAGACAGCTGGAGTGCCAGGGCCCTGGAGGTATCAATTGCCTTTGTT s panTro1.chr19_random 2677228 363 + 57627672 GTGG-TGCTGTTTGCTGGGATGGGTGAGGGGTAGACAACAGGCACTCAGGAGCCATGGCTGGGACAGAACTTATGTTTGTCAGCCACCTTGGAGGGGCGACCTGGAGAGCTCGGACAACCTCGCAGCACCCACCAGAGAGCTTAGCACCAGGGCCC-GCAGAGCTCTCCCACGTGCACACAGACTCACTGCTCGTGTGTGAGAGGGGGAATAACTGTGACTGAGCCTTCTGGAAGTTAGGGCCTGGCACAGAGGGTCCCAGATGGCCCGGAGAACCAGGTCCTGTGCAGCTATCCAGAGAAGGTCCGGTCACCAGAGACAGACAGCTGGAGTGCCAGGGCCCTGGAGGTATCAGTTGCCTTTGTT a score=1646.0 s hg17.chr17_random 2055873 18 + 2618010 TTACATGAAGACATTGAA s panTro1.chr19_random 2677591 18 + 57627672 TTACATAAAGACGTTGAA s mm5.chr11 121460147 18 + 121648857 TTAAGAGAGAGCTTTAGG a score=18381.0 s hg17.chr17_random 2055891 95 + 2618010 CTTCCACAGGAGGGCAAACGCCCTGGCTAAAGTAACTGGCGG----GGCAGCGTCA-------GGAACTCACAAG-CCCCTGTGGTCCGTGCAGGCTGCC-GTCGATT s panTro1.chr19_random 2677609 96 + 57627672 CTTCCACAGGAGGGCAAACGCCTTGGCTAAAGTAACTGGCGG----GGCAGCGTCA-------GGAACTCACAAGCCCCCTGTGGCCCGTGCAGGCTGCC-GTCAATT s mm5.chr11 121460165 97 + 121648857 TTTCCAAGGGAGGAGGATGGTCCTGGCCAGCATTATTGTTGATGGTGAAAATGACATTAGGCTGGAATTCACAGAGCC-----------TGTAGGTTCCTAGTCAGTT s rn3.chrUn 69997348 96 - 75822765 CTTCCAAGGGAGGATGATCGTCCTGGCCAGCATTATTGCTGATGGCAAAAATGACATCAGGCTGGAATTCACAGAGCC-----------TGAAGGTTCTA-GTCGGTT a score=91.0 s hg17.chr17_random 2055986 1 + 2618010 T s rn3.chrUn 69997444 1 - 75822765 T a score=91.0 s hg17.chr17_random 2055986 1 + 2618010 T s mm5.chr11 121460262 1 + 121648857 T a score=132633.0 s hg17.chr17_random 2055987 777 + 2618010 GATGAGCACAGCAGGTCCAGGCAGAGAGACGCTCACCTCCAGCTGCGGT-TGGGGTATGTCTGGGAGGCCTGTGGGGTGGCTTTGCTCCTCC---------ACCTTGGGCCAGGGT-AGCCTGTGGCAAAGA-CAGTCTCACAGTGTGTAGTCTCCTTGAGGTCTGGGCCTGTCCGCAGACAGGAAATAATGAGACCGGCTCAGGACAGGGCCGGGCTGGCCTCTGTGTTTTGTGAAAGTTCGAGTTTCTACACCCTCTGAGAAGATGCTGGGCCCTGAGGGAGGGTGTGGACCAGAAGGAAGTCACGGGGTGAGTGGAGGGGGAGGGAAGCTTATGTGCCATTTTAAGAA--------GACGACAGCAAAAACAG-GAAAATCGTATTTATCTGAATCCTATGTGATTCCACTTGAATTTTAAATAATTTAGACAAAAGTAAATTGGCGTTTACTTTTGCATTAGCCATAAGGAGCAGAA--GGAGAAATTTGCTC---CCTAGAATATG---AGTGTTGACGTGTTGCTGACATCAAAACAGAATTTAAACTTTGAGGAAAGAGAGATGCCAGTGCTGCCACAAAGGC---------ACCGACGCCCGAG-ACAGCAGGGCTCGTGTTTCTTCACGCAGACCATCTGTGCCGCCGTTGGCCGTCGGAGGTGATGAAACTGGGCTGCTTCCAATGCATTCCAGAATGTAAACCCCTCACCGTGTT--------TCTTCTTGGTTTGATCCCTGGAGTGCCTGTGCTTTGTCTTCAAGTCACACTTGGGATT-----------------TTGCTAGTTTTCCAAGA-------------------------------------------------------------------------TTATCGCATTTTTTT-- s panTro1.chrUn_random 4101091 777 + 240967748 GATGAGCACAGCGGGTCCCGGCAGAGAGACGCTCACTCCCAGCTGCGGT-TGGGGTATGTCTGGGAGGCCTGTGGGGTGGCTTTGCTCCTCC---------ACCTTGGGCCAGGGT-AGCCTGTGGCAAAGA-CAGTCTCACAGTGTGTAGTCTCCTTGAGGTCTGGGCCTGTCCGCAGACAGGAAATAACGAGACCGGCTCAGGACAGGGCCGGGCTGGCCTCTGTGTTTTGTGAAAGTTCGAGTTTCCACAGCCTCTGAGAAGATGCTGGGCCCTGAGGGAGGGTGTGGACCAGAAGGAAGTCACGGGGTGAGTGGAGGGGGAGGGAAGCTTATGTGACATTTTAAGAA--------GACGACAGCAAAAACAG-GAAAATCCTATTTATCTGAATCCTATGTGATTCCACTTGAATTTTCAATAATTTAGACAAAAGTAAATTGGCGTTTACTTTTGCATTAGCCAAAAGGAGCAGAG--GGAGAAATTTGCTC---CCTAGAATATG---AGTGTTGACGTGTTGCTGACATCAAAACAGAATTTAAACTTTGAGGAAAGAGAGATGCCAGTGCTGCCACAAAGGC---------ACCGACGCCCGAG-ACAGCAGGGCTCGTGTTTCTTCACGCAGACCATCTGTGCCGCCGTTGGCCATCGGAGGTGATGAAACTGGGCTGCTTCCAATGCATTCCAGAATGTAAACCCCTCACCGTGTT--------TCTTCTTGGTTTGATCCCTGGAGTGCCTGTGCTTTGTCTTCAAGTCACACTTGGGATT-----------------TTGCTAGTTTTCCAAGA-------------------------------------------------------------------------TTATCGCATTTTTTT-- s mm5.chr11 121460263 807 + 121648857 -------------------GGAAGGGATAAGTTTACCCTAAGCAAATTTGTGGAGCATGCTAGAAAGCCTTGGAAGATGGCTTGGGTCCTCAGGTGAAATGATCTTGGAGCAGGG--AGCATCTGG--------------ACAG---GTGGTCTCTTTGAAGTCTGGCTCCATCCATAGAAAAGGAATAATGAAACTTCCTCAAGTCAGGGCCAGACAAACCTCCGTGT----TGAAGGCTCCAGTTTCTGGA-TCTCCAAGAAAGTCCAAGGT------------------CCAAAAAGAAGTCCT----------------------------TGCACTGTTTTAGAAAGTGACGCTGAAGGCAGGAAAGAGGGAGAAAGTGGTTCTGACCTCGGTCTTAC----TCTCCTTTGAATTTGTGGCACTTCAG--AAGAGTGGCTCAGAGTTGTCTTCTGTATCAGTTATGAGAAGCAGAGCTGAGAGAAGCTGCACAGGCTAAAAATATGAAAAATGTT----TGTTACTGACATCAGAACCAACCTTGGTTTTTGTTGTCAAGCAGAAGC--ATACCATGGTAGAGGCTATGCAACGGCTGATGCTCAAGAAAAGCTGTATTGGGGTTTCTTCTCACAGAT--GTAATGCTGCCATTCTCTTCTGGAGGCAGCACAAGTGGTAC-CCTCCAGCACCTTCCCAGGCACTGGCTCCTCTCTGCTTCTGTACACATCTCCATGGCTTGGTTGCTGGGGCGT---TGCTTCCTCTTTTAGTCACTCCTGGGACTGCCGGCTTTGCATTGCCTTTTTGTTTTCCTAAGAAGATGAATTGAATCTTGTGATACCAAGGCCATGTTTGGATCTTGCCTTGTTGTATGGTTCTGGCCAGAAATGTTGATGACATTTTTTT-- s rn3.chrUn 69997445 680 - 75822765 -------------------GGAAGGGATAAGTTCACCGTAGGCATGTTTGTGGAGCATGCTAGAAAGCCCTGGAGGATGGCTCGAGTCCTCA---------------GGTTAACGTGATCTTGGAGTAGGGAGCATCTTGACAG---ATGGTCTCTTTGAAGTCTGGCCCCATCCATAGAAAAGAAAGAATGAAACTTTCTCAGGTCAGGGCCAGACAAACCTCTGTGT----TGAAGGCTCCAGTTTCTGGA-TCTCTAAG------------------AAAGTCTGAGGTCCAAAAAGAAGCCCT---------------------------CTTCACTGTTT--------------GA----------------GAAAATGGCACTGACCTCAGTCTTAC----TCTCCTTTGAATTTGTGACAATTCAG--AATAGTGGCTCAGTGTTGTCTTCTGTATCAGCTATAAGGAGCAGAGCTGGGAGAAGCTGTGCAGGCTAAAAATATG-AAAATTTT----TGTTACTGACATCAAAACCACCCTTAGTTTTTGTTTCCAAGCAGAAGCAGGC--CATGGTAGAGGCTATGCAACTTTTGATGCTCAAGAAAAACTGTGTTTGGGTTTCTTCTCGCAGATGTGATGTGCTGT--TTCTCTCCTGGAGGCAGCAAAAGTGGTAT-CCTCCGGTGCATTCCCAGGCAGTGGCTCCCCTCTGTTTCTGTAAACTTCTCCGAGGTTCAGTTGCTGGGGCTT---TGTTTTCTCTT--AGTCACTCCCGGGGCT-------------------GCCAGCTTT-------------------------------------------------------------------------------TCACTGCTTTTTTTCCC a score=26918.0 s hg17.chr17_random 2056764 257 + 2618010 TGAACAAAGTAAATCAGTTTCCGACAATGCCACTGTCGTGTTAGGGTTTCTCGGCGTGTCGCCTGGCTCTGGCCGGGGTTGTGTGTGACGCTTCCT-ACCCGTGC----TGCCTTGCACATTTATGGAGCAGGGGGTTTGCCGGCAGCGGTCTT-GGTTCCTTATAATCCTGTCATCGTCCTCGTCGTCAGCCCCCTCCTTCCCCTGCTCTTCCTCTGTTGTCCCAGCAAGACTTTCAAAGAACCAGCTATTGCTCAAGTGGT s panTro1.chrUn_random 4101868 257 + 240967748 TGAACAAAGTAAATCAGTTTCCGACAATGCCGCTGTCGCGTTAGGGTTTCTCGGCGTGTCGCCTGGCTCTGGCCGGGGTTGTGTGTGACGCTTCCT-ACCCATGC----TGCCTTGCACATTTATGGAGCAGGGGTTTTGCCGGCACCGGTCTT-GGTTCCTTATAATCCTGTCATCGTCCTCGTCATCAGCCCCCTCCTTCCCCTGCTCTTCCTCTGTTGCCCCAGCAAGACTTTCAAAGAACCAGCTATTGCTCAAGTGGT s rn3.chrUn 69998125 236 - 75822765 CTAAGAAGGTACATTGG-ATCCTACGGTACCACTGCCATGTTTGGA--TCCTATTTTGTTGACT---------CAGAAATG-GTGTGACATTTTCTCATCCAGGCCTAATACATAG-ACATCTATGG-GCACAGATTCTGTGGGCACTGACTTCAGGGTCTTGATAATGCTGTCGGT-TCACAGGCCTCAGCCTCCTC--------GTCTTGTATTTATTCCACCCATGAGATGTTTAGGGGAC---ATACTGTTAGTATGAT a score=2336.0 s hg17.chr17_random 2057021 20 + 2618010 CTTTTAGAGAATGTGCACAC s panTro1.chrUn_random 4102125 20 + 240967748 CTTTTAGAGAATGTGCACAC s rn3.chrUn 69998703 18 - 75822765 CTGCCAGACAATGAGCAT-- a score=20115.0 s hg17.chr17_random 2057041 80 + 2618010 Ctctcaaccactccacaacacctca-agattgcagtggttgtgtttcgggttcacatacatgtatatcgagactcagggaa------------ s panTro1.chrUn_random 4102145 80 + 240967748 CTCTCGACCACTCCACAATACCTCA-AGATTGCAGTGGTTGTGTTTCGGGTTCACATACATGTATATCgagactcagggaa------------ s mm5.chr11 121461587 93 + 121648857 CTTTCGCTTTTTCTATCACATTCCACAGTTGGTGGTAGTGGTATTTTTGATTCGCACAAATGGATGTTGAGACTCGAAGAGCATAAACAACTT s rn3.chrUn 69998721 93 - 75822765 CTTTTGCTTTTTCTATCACATACCACAGCTGGTAGTGGTGGTGTTTTTGATACACGTGAATAGATGTTGAGACTCAAAGAGCATAAACAACTT a score=17034.0 s hg17.chr17_random 2057121 51 + 2618010 gtccagggccacaca----ggaagtggcag-----agccaagatttagacctgatctagc s panTro1.chrUn_random 4102225 51 + 240967748 gtccagggccacaca----ggaagtagcag-----agccaagatttagacctgatctagc s mm5.chr11 121461680 53 + 121648857 GCTCAGAGCCACAT-----GATTATGACAAAAC--AGCCAGGATTTGGACCAAGTCTGGC s rn3.chrUn 69998814 55 - 75822765 GCTCAGAGCCACAT-----GATTATGACAAAACTGAGCTAGGATTTGGACAGAGTCTGGC s canFam1.chrUn 59452916 55 + 91062872 GCCCAGGGCCGCACGGTGCGGAGGTGACGG-----GGCAGCATTTGGGACCAAAGGCGGC a score=0.0 s hg17.chr17_random 2057172 4 + 2618010 tcca a score=1899.0 s hg17.chr17_random 2057172 4 + 2618010 tcca s panTro1.chrUn_random 4102276 4 + 240967748 tcca s mm5.chr11 121461733 4 + 121648857 TCTA s rn3.chrUn 69998869 4 - 75822765 TCCA a score=47468.0 s hg17.chr17_random 2057176 219 + 2618010 aatcccag--cttct--------ctg--ttgctg-------------gccacgcAGGATGA---------------------------GCTCTGTTT---------------------------CCCAGGCAGGCTGA---------GCAAATGTCCAGGATGGCAGGTTCTTGGCAGGGCCCTGG-------GGGC--TGAGGCCACAGAAGGCCTCCTCACAGGAGTGGGGGTGAAGGGCCCCAGGTCCAGGCTGGATGACCTTCTGCCCTTCCTGATGC-GGGTGACCTGGCTGTGCTGGTTTGAAGTAAAAAC s panTro1.chrUn_random 4102782 219 + 240967748 AATCCCAG--CTTCT--------CTG--TTGCTG-------------GCCATGCAGGATGA---------------------------GCTCTGTTT---------------------------CCCAGGCAGGCTGA---------GCAAATGTCCAGGATGGCAGGTTCTTGGCAGGGCCCTGG-------GGGC--TGAGACCACAGAAGGCCCCCTCACAGGAGTGGGGGTGAAGGGCCCCAGGTCCAGGCTGGATGACCTTCTGCCCTTCCTGATGC-GGGTGACCTGGCTGTGCTGGTTTGAAGTAAAAAC s mm5.chr11 121461737 255 + 121648857 AATCCCAGAACTTCT--------CCTCCTTGCTGTCATGTTCTGTACACCAAACACAGTGA---------------------------CCACAGCTTCAAAAAGTACCTCCCTTCCCAGTGTAACCCTGGCGCACTGGAGCAGCCTCACAAACATCTGCACTGGCAGGTTTTTGGCAGGGTCCTGG-------GGGC--GGAGGCTAT-GCAAGTCTCCTGACAAGGGTAAGGGTTTGGG--CCCAGGACCAGA--------------GCTAATCCTGATTT-GGGTGACCTGGCTGGTTTGGTCTGAAATCAAATG s rn3.chrUn 69998873 256 - 75822765 AATCCCAGACTTTCT--------CCTCCTTGCTGTCATGTTCTGTACACCAAACACAGTGACTACAGCTTCAAAAAGTACCTCCCTTCCCAGTGTAA---------------------------CCCTGGTTCACTGGAGCAGCCACACAAACATCCGCACTGACAGGTTTTTGGCAGGGTCCTGG-------GGGC--GGAGGCTAT-GCAAGTCTCCTGACAAGGGTAAGGGTTTGGG--CCCAGGACCAGA--------------GCCAATCCTGCTTTGGGGTGACCTGGCTGGTTTGGTCTGAAATCAAACC s canFam1.chrUn 59452971 220 + 91062872 GACCACGG--CTCCTGGGGGGGCCTCCCTTCCTG---------------------GGATGA---------------------------GC-CCGATT---------------------------CGCGGGCGGGCCGA---------GCACGCGTGTGGGGCGCCGGGCTCCTGGTGGGGTTCAGGGCCTGCTGGGCCACGGGGCTGC-GGGG-----CCGAGGGGCCGAGGGGAGGAGGGCTCCTGGGTCCGGGGGGACACCCCCTGCCCCATGCTGCTGC-GG--GACGCGGGAG-GCGGGCGTGGAAGGGAAGC a score=55271.0 s hg17.chr17_random 2057395 247 + 2618010 GCTGTTGGCAGAGAATCGAGACGCGGGGAAGGTTAGTTCAGGGCAGGGATGTTGGTGTCTGCGGGTGATGACTGCAGCCTCCCTGTGTGTTGTGTTTCCCGGTTGGCACACCTCTGTTTATTGTCT--GCGCCAGCCTCATACCCCCTTTCCCTCAGCGTATTTCCTTCATAACAGGATGGCAGACTCAGCGGCTGCTATGGGGCTGTTCCAACTACTGAAAACACTGAGATAAGGCCCACGGTGGCAG s panTro1.chrUn_random 4103001 247 + 240967748 GCTGTTGGCAGAGAATCGAGACGCGGGGAAGGTTAGTTCAGGGCAGGGATGTTGGTGTCTGCGGGTGATGACTGCAGCCTCCCTGTGTGTTGTGTTTCCCGGTTGGCACACCTCTGTTTATTGTCT--GCGCCAGCCTCATACCCCCTTTCCCTCAGCGTATTTCCTTCATAACAGGATGGCAGACTCAGCGGCTGCTATGGGGCTGTTCCAACTACTGAAAACACTGAGATAAGGCCCACGGTGGCAG s mm5.chr11 121461992 221 + 121648857 CATGTTGGCAGAGGCTC-AGATACCATGAAGGTTAGCTCAGGGCAGGG-TAGTGGTGTCATC-AGCCATGATT-TAGCCT-CTTGGGTGTCCTG-TTCTTTCTTGGCTCACTTTTG-TTATTGTCT--GTGTCAG--TCACACTCCC---------------TTCCTTCATAACAGGATGGCAGACAAAGCTGCTGCCCT-GGGCTGTTCCAGCTACTGAAAACACTGAGATAAGCCCCTCAA-AGCAG s canFam1.chrUn 59453191 203 + 91062872 ---GCTGGCTGCGG----AGGTGCCGGGCCGT--------GGGCAGAG-------------------------GCGGCCGCCCTGGTCACCCCGCTGCCCTCTTGGCTCACCTCTGTTTATTGTCTCCGCGTCGG-CTCACGCCCCT-TCCCCTGGGCGCGTTTCCTTCATAACAGGATGGCGGACGTGGCCGCTGTCG--GGGCTGTGCCAGTCGCTGAAAACAC--AGACAGACGCCACGACGGCAG a score=10154.0 s hg17.chr17_random 2057642 79 + 2618010 AAATCCCTGAGGCTGCCAAGGGTGCCCACATCCCAGATGCCGGGGCTCTGAGAGTCGCCTCC-----TCTGTTCTTAGTTGCCT s panTro1.chrUn_random 4103248 79 + 240967748 AAATCCCTGAGGCTGCCAAGGGTGCCCACATCCCAGATGCCGGGGCTCTGAGAGTCGCCTCC-----TCTGTTCTTAGTTGCCT s mm5.chr11 121462213 78 + 121648857 AAATCCCTATGATTGCAAAGTGTTCAC---TCCTTGAC-CTTGCTCTTTGAGAGTTGTGTCTGTCTGTCTGTCTTT--CTGCCT a score=7839.0 s hg17.chr17_random 2057721 81 + 2618010 CGGATGTGAACAGGCGGCCATCAGGGGGTGTCATCCTGAGCCCTGAGGTGGGGCCTGGGGTCTGCACTCGAATTCACGGTG s panTro1.chrUn_random 4103327 81 + 240967748 CGGATGTGAACAGGCGGCCATCAGGGGGTGTCATCCTGAGCCCTGAGGTGGGGCCTGGGGTCTGCACTCGAATTCACGGTG a score=54974.0 s hg17.chr17_random 2057802 221 + 2618010 CCCTGATGCTAAGTTTTAATTCTTAAAAAGCTTTTCTAGCTCAAGATACTCCTCAATATATT----AATTATTGGCTGAAAAA--AGCCTAAATTTTTAATCTTGCAAATGCTAGaatttctgagctccctatg-ttttctctcaattctgctgcaagcttggctttcctttctgagcttatctttttc----ttgaggtactttatcaaatgcagtagcaatgatt-attca s panTro1.chrUn_random 4103408 221 + 240967748 CTCTGATGCTAAGTTTTAATTCTTAAAAAGCTTTTCTAGCTCAAGATACTCCTCAATATATT----AATTATTGGCTGAAAAA--AGCCTAAATTTTTAATCTTGCAAATGCTAGAATTTCTGAGCTCCCTATG-TTTTCTCTCAATTCTGCTGCAAGCTTGGCTTTCCTTTCTGAGCTTATCTTTTTC----TCGAGGTACTTTATCAAATGCAGTAGCAATGATT-ATTCA s mm5.chr11 121462373 230 + 121648857 CCCTGATAACTCTCTTACATTC-TGGAAGCCTTTTCTAGTTGAAGGCCCTAGATTGAATATTCCACAATTATCAGCTGAAGAAACAATCACAGTTTTTTGTCTCACAAAAGCTAT-ACTTCTGGGACTCCTATA-TTTTCTCTCAGTTCTTCTGCCAATTTGCTTATTCTTTTGTGGATTAACTTTTTCCCCTTCAAGGTATGTTACTGAGCACAGTAGAAACAACTAATTCA s rn3.chrUn 69999319 227 - 75822765 CCTTGATGCTT-TCTTACACCC-TGGAAGTCTTTTCTAGTTAAAGGTCCTTGGTTGCGTATTCCTCCGTTATCA-CTGAAGAAATGATCACATTTTTTCGTCTTGCAAAAGCTAT-ACTTCTGGGACTCCTCTACTTTTCTCTCAGTTCTTCTGCCAATTTACTTATTCTTTTGTGGATTAACTTTTTCCCCTTCAAGGTGTTTT--TGAGCGTAGTAGAAATAGCTAATTCA a score=45867.0 s hg17.chr17_random 2058023 89 + 2618010 ctctagagacattttgcttggaaagcttttcacccaatgccaggattacattgggtatgtttcctgctttctaagttattacaggagcc s panTro1.chrUn_random 4103629 89 + 240967748 CTCTAGAGacattttgcttggaaagcttttcacccaatgccaggattacattgggtatgtttcctgctttctaagttattacaggagcc s mm5.chr11 121462603 83 + 121648857 TTCTGGTGATGTTTTGTTTGGAAAGCTCTTTG--CAAAGCCAGGGCTACATTAGGTACATTTCCTGTTTTCTAGGTTATTGGAGG---- s rn3.chrUn 69999546 83 - 75822765 TTCTGGTGATGTTTTGCTTGGAAAGCCCTTTG--CAAAGCCAAGGCTACACTAGGTACATTTCCTGTTTTCTAGGTTATTGGAGG---- s canFam1.chrUn 6368870 88 + 91062872 CCCCCGGGATATTTTGCTTGG-AAGCCCTTCGCCTGGAGCTGGGGTTGCGTTAGGTGCGTTTCCTGTTTTCCAGGACAACGCAGGAGCC a score=36938.0 s hg17.chr17_random 2058112 227 + 2618010 catgttagtgattttttttttacc---------attacatgtcacaagttgccattccccgactttctaaagtagtttattcaccacccagtctatcagccagtgccacatattaatactttaggttttattatggcagcacctacttttggcaccaaattcTCTATTGGTCAGCTATTGCTATAATAATGCTGTGTAACAAATGGCCCCACCAATCCCAGTGGTTTAGAAGAAGC s panTro1.chrUn_random 4103718 226 + 240967748 catgttagtgattttttttt-acc---------attacatgtcacaagttgccattccccgagtttctaaAGTAGtttattcaccacccagtctatcagccagtgccacatattaatactttaggttttattacggcagcacctacttttggcaccaaattcTCTATTGGTCAGCTATTGCTATAATAATGCTGTGTAACAAATGGCCCCACCAATCCCAGTGGTTTAGAAGAAGC s mm5.chr11 121462686 142 + 121648857 CACTTTTGTGATTTAAGACAAAACAAAACAAAAATTACATAACACAATTTGCCGTTTC-----------------------------------------------------------------------------------CCTGCTTTGGGCCCCAGATCCTTT-----TCAGCTATTGCTACAACAGTGCTGTAC-ACTAACTGCCCTGCTGATCCCACTGGGTTAGGA----- s rn3.chrUn 69999629 147 - 75822765 CAGTTTTGTGATTTAAAACAAAACAAAACAAAAATTACATAACACAAATTGCCATTTC-----------------------------------------------------------------------------------ACAACTTTTGACACCAGATTCTTTTCTAGTCAGCTATTGCTACAACAATGCTGTAT-ACTACCTGCCTTGCTGATTCCACTGGTTTAGGA----- a score=32090.0 s hg17.chr17_random 2058339 314 + 2618010 TGTTTGTCTCTCATGCCTATGTCGGTGTAGTGGCCGCAGCATCTACTTCAGGCTGCAGGTGCCTCTCAGGTGTGTGGCTT-----GGCTCTCATTTTGAGACCTGAT----GGAAGAGGCAGAAGGTCCCCCCGGGGCACTTCCCAGGCCAGGCGTGCAGGAGGGCAAGTGGAAGCACATACTT----------ACCTGTACTCAGAACTGCCCCCACTGTCCCCTT--CCACACTTCAGTGGTCACAGCAAGTCCCAT-TTCCAATCCATGGTGCTGGGACTGGGAGGGAAGGAA-GGACTGTGAGTGTACAATGCCACCTGCCACAGGAATGGCT s panTro1.chrUn_random 4103944 314 + 240967748 TGTTTGTCTCTCATGCCTATGTCGGTGTAGTGGCCGCAGCATCTACTTCAGGCTGCAGGTGCCTCTCAGGTGTGTGGCTT-----GGCTCTCATTTTGAGACCTGAT----GGAAGAGGCAGAAGGTCCCCCCGGGGCATTTCCCAGGCCAGGCATGCAGGAGGGCAAGTGGAAGCACATACTT----------ACCTGTACTCAGAACTGCCCCCACTGTCCCCTT--CCACACTTCAGTGGTCACAGCAAGTCCCAT-TTCCAATCCATGGTGCTGGGACTGGGAGGGAAGGAA-GGACTGTGAGTGTACAATGCCACCTGCCACAGGAATGGCT s mm5.chr11 121462828 270 + 121648857 ----CTTCTCTGA-----ATTTCCGCTT--CTGCCGCAACATC----TCATATTAGAGTCACTCCTCA------------------TCCCTCTTTCTAAGATCCTGT----GGAAGATGCAGAAG--CATGATAGGGCAAGTTCCAGACAGAAACTGCAAGAGGGT---TAGCAGGATGTGTTTTGCCTCTGAAACCTTTGCTCAGAACAATTCC--TTGTTCTGTTGACCACATTCCAATATTTACACCAGGTTTCAT-GGCC-ATCTGTGGTACTGAGGATGGGAGGAAA------------------ACAAT--CTTCTGCTAT-GGGGTGGCT s rn3.chrUn 69999776 276 - 75822765 ----TTTCTCTTA-----ATTTCTG--------------CTTCTGGCACA----------ACATCTCATATTAGAGTCTTTTCTCTTCCCTCTTTCTAAGGAAGGGTCTAAGGAAGATGCAGAAG--CACGACAGGGCAAGTTCCAGACAGAAACTGCAAGAGGTT---GAGCAGAATGTGTTTTGCCTCTGAAACCTCTGCTCAGAGCAACTCC--TTGTCCGTTCAACCACATTCCATTGCTTAC-CCAGGTCCCGTGTGCCCACCTGTGGTACTGAGGATGGGAGGAAA------------------ACAAT--ATTTTGCTACGGGAGTGGCT s canFam1.chrUn 6369115 262 + 91062872 ----TGTCTCTCGCTCACGCGTGTGCGTCGAGGCCGCGGGGGC-GTTTGGGCCTGCGCTTGTCTCTCTGGCACCCGGACCGGAG-GCCCCGCTCCCTGGGCCTGTCC--------------------TCCCGTGGAGCA--------GCCGGG---GCGTGAGGATGAGCAGCAGCAGGTCTCGTGTCTGA---GCCCCTGCCCAGACCCGCCCA--CTGCCCTCTC--CCACAGTTCA------------------------CAGGCTGGGGTGGCGGCTGCGGTGGGGCAAGACTTGGCTCCAGGCGC-------CGTTTTCCAAGGACATGGCC a score=18358.0 s hg17.chr17_random 2058653 183 + 2618010 CAAGGATGGAGGCAAAGTTAACACCAGGAGTTGCCCT-GTCCCTCTGCTCCTGAAGCCCTTGGCTTTGCAGAGATGATGTGGTGCAGTGGAAAGGACACAGTGCATGGC-GGGCCAGCTCGGCTGC-CCTGACACA--CTGTGGCCAGCTGGCCT------CTCCTCGGTGTCCCTGGAG---CTGCA-GCTTTGATG s panTro1.chrUn_random 4104258 183 + 240967748 CAAGGATGAAGGCAAAGTTAACACCAGGAGTTGCCCT-GTCCCTCTGCTCCTGAAGCCCTTGGCTTTGCAGAGATGATGTGGTGCAGTGGAAAGGACACAGTGCATGGC-GGGCCAGCTCGGCTGC-CCTGACACA--CTGTGGCCAGCAGGCCT------CTCCTCGGTGTCCCTGGAG---CTGCA-GCTTTGATG s mm5.chr11 121463098 149 + 121648857 GAAGGATTAAGGCAAGG-TAAAAATAGGATAAG-------CATCCTGCTCT-----CTCTT-------------------------GTAGAGAGGACAGATCTCCAGCCAAGGCCAGCTAGGCTACTCCTTACATGACCTATGACCTA-TAGCCT------CTCATTAGCTTTCTTTGAG---CTGCA-GCTGAAATG s canFam1.chrUn 6369377 138 + 91062872 -------------------------CCGAGGGGCCCTCATCCCTCGGCTCCTGACGCCCTT----------------------------GGGAGGGCAGCGTGCAGGGCCGAGCCAGCCAGGG----CCCCACATG--CTCCCAGGAGCTGGCCTAGCAGGCTCCTTGG-GGCCCCGGAGCACCTGCACTCTGCGCTG a score=96914.0 s hg17.chr17_random 2058836 773 + 2618010 CCAGGGTAGAAGATGAGTGGGAGGCGGAGGGGCATTTCCAGCCAACTCTATACACTGAGAAGCACTAAAGATTAACAGGTGACTGTCTGGGAAGAGCCAGCTTTGTAAGAGACACTGAGAGGCACCACTTCCCAGGCCTTCAT----CTTCCCTCTGGATGGGTGGAGGAACAGGGACACCAAACCTGACATTGCTCCCA-TACTGAGTGCCAGCCATGGCCCCACCTTGCACAGCCCATGCCTCAAGGGGGCCATGGCTAGCACTATCTGACAAGAGGATGCTGGGCAGGTGGGTGGGAGCAGAGGACCAGGTG-AAGGCTGGGGCCTGTGTACCCCAGTTGAAGGGAGCTAGATTTA--ACTCCCTGAGACCCAAGAAGCATCCGTCTGGCCACC-------CCAGTCTAATTGG--CTAGGAATTTGGTGGTGGCACAGGTGAGAAGGTCCCTGCTCCGTGGAGCTTGCAGGTTCTGGAAACAACCCCACCACATCTGTTGCAACACCTGCAGCCGTCTTCTTGCATCTTTGCTTTGTGCTGGACGCTTCCATATGGAACACCTAACACAACATCtgtagtgggctgagggtaaccc--tcaaagatatatgtccacatcctaattcccagaacctgggactgtgaccttatttggaaaaggggtctttgcagatttaattaagtgaagggtattgagttggggagaccattcttgtctatctgggtgggctct-agtccactgataagtattcttagaagacaga---agaggaggaggccatgtgtccaca s panTro1.chrUn_random 4104441 773 + 240967748 CCAGGGTAGAAGATGAGTGGGAGGTGGAGGGGCATTTCCAGCCAACTCTATACACTGAGAAGCACTAAAGATTAACAGGTGACTGTCTGGGAAGAGCCAGCTTTGTAAGAGACACTGACAGGCACCACTTCCCAGGTCTTCAT----CTTCCCTCTGGATGGGTGGAGGAACAGGGACACCAAACCTGACATTGCTCCCA-TACTGAGTGCCAGCCATGGCCCCACCTTGCACAGCCCATGCCTCAAAGGGGCCATGGCTAGCACTATGTGACAAGAGGATGCTGGGCAGGTGGGTGGGAGCAGAGGACCAGGTG-AAGGCTGGGGCCTGTGTACCCCAGTTGAAGGGAGCTGGATTTA--ACTCCCTGAGACCCAAGAAGCATCCGTCTGGCCACC-------CCAGTCTAATTGG--CTAGGAATTTGGTGGTGGCACAGGTGAGAAGGTCCCTGCTCCGTGGAGCTTGCAGGTTCTGGAAACAACCCCACCACATCTGTTGCAACACCTGCAGCCATCTTCTTGCATCTTTGCTTTGTGCTGGACGCTTCCATATGGGACACCTAACACAACATCtgtagtgggctgagggtaaccc--tcaaagatatatgtccacatcctaattcccagaacctgggactgtgaccttatttggaaaaggggtctttgcagatttaattaagtgaagggtattgagttggggagaccattcttgtctatctgggtgggctct-agtccactgataagtattcttagaagacaga---agaggaggaggccatgtgtccaca s canFam1.chrUn 6369515 665 + 91062872 -------TGAAAAGGGGTGAGAGGCGG------CCCTCCAG--------------------GGGCCCAGGGCAGACCGGTGTCCTTCCCTGCAGGGCCTGCCCTG--ACGCATGCTGAC-TGCGCCGCTCCTCAAGCCTTCCTTCTGCCTCCCTCTGGGTGGGTGCAGGGGCA--------------------GCCCCCAGTACTGAGTGCGAGTCGTG----CACCTCGCA---------GCTCAGGGGACACAC-------------------------------CGGGTGTG-GGCAGCAGAGGAGTGGCTGCAAGGCAGCACCCTGAGCACCCCAGCCGCACAGAGCCCGACCGAACACTCGCTGGGAGCAGAGAAGCGTCCGGCCAGCAGCCCCCCCCGCCAGGCAGACTGGGTCTGGGGCCTCCGTGACGGCCACGGAGGACAGATCCCGGCCCCGT-GAGCTCGC-GGCTCTAGAAATGA-CCAACAGCACCCGTCACTGCACCTGCAGCTGGCCTCCCGTGCCCCCGTCTTGCGCCGGACATTTGC-TCTGAAGCCTTCAGCACACTGTCTGCAGaggcccgattgtggtcccaccaacgg-----gtccccttcctccttcccggaatctgtggatgggaccccgtgtagaaaatgtgtgtttgcaggtgtaatgaagtgaggggc-ctgagt-------------------tatctgagtcggtcctgaattcaatggcatgtgtccttacaaaggagaggcaggggCGGAGG-GATGCGGCCACA a score=2119.0 s hg17.chr17_random 2059609 22 + 2618010 gaggcagaggctagagtgCTGT s panTro1.chrUn_random 4105214 22 + 240967748 gaggcagaggctagagtgctgt a score=19566.0 s hg17.chr17_random 2059631 246 + 2618010 GGGACCACGCCCCCTCTGGCAGCTCGTGAGGGGCCACGCCTCCTCTGGCAGCTCGTGAGGGACCCACAACAGGGAGGACTGGGGCCTTGCTGGGCTGGAGAGCCCAGAGGAACAAGCAGGGGGCTAGGGCCCCTGAGATGCTGTATGACTGGTCCATTGTTCCTGTTCCTTTCCCATAGAAGAAAAAGGAGAGTAGT----TTGGGGACAGattcatgcacatatgcacacatacatactgcacacacat s panTro1.chrUn_random 4106110 243 + 240967748 GGGACCACGCCCC-TCTGGCCGCTCGTGAGAGACCACGCCCCCTCTGGCAGCTCCTGAGGGACCCACAACAGGGAGGACTGGGGCCTTGCTGGGCTGGAGAGCCCAGAGGAACAAGCAGGGGGCTAGGGCCCCTGAGATGCTGTATGACTGGTCCATTGTTCCAGGTCCTTTCCCATAGAAGAAAAAGGAGAGTAGTTGCGTT-----CAGGTTCATGCACATACGCACACATACATA-TGCACACACAT a score=3321.0 s hg17.chr17_random 2059877 39 + 2618010 acatactatatacaatacagtgggtatacatatagacac s panTro1.chrUn_random 236860227 39 - 240967748 acatactatatacaatacagtgtgtatacacatagacac a score=7087.0 s hg17.chr17_random 2059918 77 + 2618010 tacagcacatgcacacacacacacattctgcacacaatactgcatgcatgcacatacggcacagcacatacatgcac s panTro1.chrUn_random 236860266 77 - 240967748 tacagcacatgcatgcacacacacattctgcacacaatactgcatgcatgcacatacggcacagcacatacatgcaC a score=5590.0 s hg17.chr17_random 2059997 60 + 2618010 atgcTGCAGCACACACAATACTGCACACAGAGCATACAATCCTGCAAGTACACCATACAC s panTro1.chrUn_random 236860347 60 - 240967748 ATGCTGCAGCACACACAATACTGCACGCAGAGCATACAATCCTGCAAGTACACCATACAC a score=139788.0 s hg17.chr17_random 2060088 1543 + 2618010 TACTCTTCCAGACCctcattttgtccttacagcagctctctggggtgggcctccccaactccctttaatggatgaagatgctgagacttaagggttacaaagtctgcttgaa-gtcacaAGGTGCTGCGACTTGAGCTCAGGGCCAGGTGAATCCCTGATGTTCCTGGCAATCTGCTCCTGAAGGGTGCAGCAGGGCCTCTCTGGTCTGGTTCTCCCTCTTCCTGTAACCTTTGAGGTAGTGCCTGCAGGAACCCTGGGACCCCCCCAC-CCCCACCCCAATTTGCCTGCTCCTGTTCCCTGGGCTCAGCAGAGTCACCATCCCAGCCCCAGGACAAGTGTCCTCCTTGGTGGGGGACATGTGGTCATTGCTGGGGCG--ATACAGTGAGATGTGGCCACACAGCCATGT-CCAGACCTTGGGCACCATGCTGCTCATGCTCCAG-ACTGCTGGGGAGCACCTGGTCC-TGGTTGTGTCTGGCTTTGGGTCCTTCAATTTCTGCTGTCTGCTTTCCTGTCATTGCTCCCACTTCTCAACCCTGCCTTGGTAGCTTCTCTGATATGATCAGGCAAGATCTTAGAGCACAGTTGCATGTTTATATTATAGCTTCTCTATCACTCCTGTGGGTGTGCACATGTTGTATGGTGTGTGTGTGGATGTGTTTCTCTA-CGAGTACAGAGCACATATGTTTGCATGCATTCTGTGTGTGCACAAGGCATGTTTAACATATCTGGTGTATACA-CAGGGTATCCATAAGGTTTATGTGGTATGTGTGCATACTGTGTATGGTGTACTTGCAGGATTGTATGCTCTGTGTGCAGTATTGTGTGTGCTGCAgcat-gt-gtgcatgtatgtgctgtgccgtatgtgcatgcatgcagtattgtgtgcagaatgtgtgtgtgtgtgcatgtgctgtagtgtgtctatatgtatacccactgtattgtatatagtatgt-atgtgtgtgcagtatgtatgtgtgcatatgtgcatgaatctgtgCTCTGAAAAGAAAGCCAACACAGTGGCTGGACAACATTCTACCAGTCCCTTGAGACTATCAAAAGTCAGTGTGTTCAGTCACACAGAGGAGCCTTtgaagacttcagatgaatgactcaggagcccctcagtcatctcagcagaagacagagataggactatgtgaaaggcctagggaggaccttcttgtgaaatagagtgaatcctgtgtgtgacatacacaggagaccacaaagttcttgagaatgttatatcagcagaaacactgccaacttggactgaagggaacagagaaagtatgaaatgaaagatgaaagagcactgttggactctccaaaattctgcaggaaggaagcaggctgataaaaccactcagtggcaaacatgtgctacctttcatgaaaaaggaaggatgactccaagggtggagccatgagcccagatgttggacctgggacccacagaggattattttctcaggccttgaaatctaatgtttgcttagctggtttttcaaagtgcttgggactgaggactcctttt s panTro1.chrUn_random 4106556 1553 + 240967748 TACTCTTCCAGACCctcattttgtcctcacagcagctctctggggtgggcctccccaactccctttactggatgaagatgctgagacttaagggttacaaagtctgcttgaaagtcacaAGGTGCTGCGACTTGAGCTCAGGGCCAGGTGAATCCCTGATGTTCCTGGCAATCTGCTCCTGAAGGGTGCAGCAGGGCCTCTCTGGTCTGGTTCTCCCTCTTCCTGTAACCTTTGAGGTAGTGCCTGCAGGAACCCTGGGACCCCCCCACGCCCCACCCCAATTTGCCTGCTCCTGTTCCCTGGGCTCAGCAGAGTCACCATCCCAGCCCCAGGACAAGTGTCCTCCTTGGTGGGGGACATGTGGTCATTGCTGGGGCGTTATACAGTGAGATGTGGCCACACAGCCATGTGCCAGACCTTGGGCACCATGCTGCTCATGCTCCAGGACTGCTGGGGAGCACCTGGTCCATGGTTGTGTCTGGCTTTGGGTCCTTCAATTTCTGCTGTCTGCTTTCCTGTCATTGCTCCCACTTCTCAACCCTGCCTTGGTAGCTTCTCTGATATGATCAGGCAAGATCTTAGAGCACAGTTGCATGTTTACGTTATAGCTTCTCTATCACTCCTGTGGGTGTGCACATGTTGTATGGTGTGTGTGTGGATGTGTTTCTCTAGCGAGTACAGAGCACATGTGTTTGCATGCATTCTGTGTGTGCACAAGGCATGTTTAACATATCTGGTGTATACAGCAGGGTATCTATAAGGTTTATGTGGTATGTGTGCATACTGTGTATGGTGTACTTGCAGGATTGTATGCTCTGCGTGCAGTATTGTGTGTGCTGCAGCATCGTCGtgcatgtatgtgctgtgccgtatgtgcatgcatgcagtattgtgtgcagaatgtgtgtgtgcatgcatgtgctgtagtgt--ctatgtgtatacacactgtattgtatatagtatgtgatgtgtgtgcagtatgtatgtgtgcgtatgtgcatgaatctgtgCTCTGAAAAGAAAGCCAACACAGTGGCTGGACAACATTCTACCAGTCCCTTGAGACTATCAAAAGTCAGTGTGTTCAGTCACACAGAGGAGCCTTtgaagacttcagatgaatgactcaggagcccctcagtcatctcagcagaagacagagataggactatgtgaaaggcctagggaagaccttcttgtgaaatagagtgaatcctgtgtgtgacatacacaggagaccacaaagttcttgagaatgttatatcagcagaaacactgccaacttggactgaagggaacagagaaagtatgaaatgaaagatgaaagagcactgttggactctccaaaattctacaggaaggaagcaggctgataaaaccactcagtggcaaacatgtgctacctttcatgaaaaaggaaggatgactccaagggtggagccatgagcccagatgttggacctgggacccacagaggattattttctcaggccttgaaatctaatgtttgcttagctggtttttcaaagtgcttgggactgaggactcctttt a score=19873.0 s hg17.chr17_random 2061631 174 + 2618010 ttccttccattttctccctttttgaatgagaatgtctataactgtcaactgatgcctgtcctaatgttgggtctgacagcagatcatttgtttcttgagttttgcaggtttacaggtggagcagaattatgcatctggatggattatac------cctaacccaaccctaatttacatta s panTro1.chrUn_random 4108109 173 + 240967748 ttccttccattttctccatttt-gaatgagaatgtctataactgtcaactgatgcctgtcctaatgttgggtctgacagcagatcatttgtttcttgagttttgcaggtttacaggtggagcagaattatgcatctggatggattatac------cctaacccaaccctaatttacatta s rn3.chrUn 70001205 162 - 75822765 TCTCTTTTATTTTCTTGCTTTT-TGATGGGAAGGTTGATATCAGT----------CTGCCACATTGTCATACTTGAGGAGCAAGTAACTGTCCCCTCA------TAGGCCTGTGAACGGAG-AATACTATACATCTGGATAGACTATATCTAGAGCCTCACTTACTCCTGACTGAGACGA a score=5893.0 s hg17.chr17_random 2061805 29 + 2618010 tgaaatttgggacact--tgaactaa-gtaaa s panTro1.chrUn_random 4108282 29 + 240967748 tgaaatttgggacact--tgaactaa-gtaaa s mm5.chr11 121464547 30 + 121648857 TGAAGTTTGGGAGTTT--AAAACTGGTTTATA s rn3.chrUn 70001367 31 - 75822765 TGAGACTTGGGATATTTATGTACTAA-TTTAA a score=868.0 s hg17.chr17_random 2061834 11 + 2618010 tttagatgaga s panTro1.chrUn_random 4108311 11 + 240967748 tttagatgaga s mm5.chr11 121464577 8 + 121648857 TTTAGACT--- a score=342644.0 s hg17.chr17_random 2061845 1391 + 2618010 tttctggactttgacttaatgctgtaatgaggtagatgttcacagatgctggggtggagtg---GCATCCT---TGTGAGTCTTTGGAAGCCAGGGGCCAACtgtagtcagcaggataatggcccccaaagatgtccacatctcactcccca--------------ctaccttatatgtcaagagggagtttgcaggtgtgattaaattaagggtcttgaggtgggggattatcctggattaaccaggtggccagtgcaatcatgaaagtcctcacaagaaggaagcaacactgttagcatcagagaagatgtaactacggaagcaaaagtcagagtgatgagtttgctttagaggtggagggaggaacccagaggcatggaaga-------------------taggtaacctcta-------------gaagctggaagaggcacggaagtgaattctccccagagcc--tccagaaagaagagactcttgctgacgcc------ttggtttagtccagtgaaacccatgtgggacttctgatttccaaaaccataagatgataag--------tgtgtgttgctttaagccactaagtctgtggtcatcggccgtagcagcaataggaagcaaatacaGGCAT----------GAACATCAAAAGAGCAGG-----AGACGGGCATTCCGGAAGTCGCAGGAAGAACACGCTTTCTACTG----------CTCCtgttgggtgttgtcgatcagccaagatgagggctgagaactgatgccaggg--ttagcctttgccggtaacat-------cggc-----aaaagcacgttta-----------------------------------------------------------------gtggaataggggaggtaaaatctagcttagcgaggactcaggaaagaccaggaagagaggaagtggagaagg-aagactgtgttcttagaggggcatcttgaaaaagagcagagagacagccagcagctg-----gggggCCCTGGCCGGCAGGA-----GAGGGGACAGCA------TGACTGTTGTTGAGGGTGGCCCCACTGAGGGGGCAACCAGAGCTCCTGGCCAGC-CTGGAGTGGGggacg-gcggtgggtctggctggccaggcacagttgggtgggaagatggtg-----tggtcggagcacgtggaca------------ttcttttctgattgcttctattttctcagtgagatgggaaacaatcatcTCCTTT----TTGCTAAATGTGCTGAGCAGGCTTGAGGGATGCCTGGACTTCAGCAGGAAGCAATAGTCATGCCTCGCACATGCGGCTTTCAATCCTGTTTGGTTGGAGAAATAATATACCGCCCAACTAGTTTGTTTTAAATTAGACAAACACCCCGGAGCCTGCCTGCTGCTGGAG----------ACGGCTGTGTTTGGAGTGGGGCTCTCGGCGGTGCTGAGGTCAGCTCTGTTTGACATTCCTGATGTGTGAAGGGCGCACTTAGGACAACACCACCAGGCCACGGGCGTGCAGCTCCCTGGAGCTGCTCCAGGGGCCCTGCCTG s panTro1.chrUn_random 4108322 1396 + 240967748 tttctggactttgacttaatgctgtaatgaggtagatgttcacagatgctggggtggagtg---gcatcct---tgtgagtctttggaagccaggggccaACtgtagtcagcaggataatggcccccaaagatgtccacatctcactcccca--------------ctaccttatatgtcaagagggagtttgcaggtgtgattaaattaagggtcttgaggtggggggttatcctggattaaccaggtggccagtgcaatcatgagagtcctcacaagaaggaagcaacactgttagcatcagagaagatgtaactacggaagcaaaagtcagagtgatgagtttgctttagaagtggagggaggaacccagaggcatggaag--------------------taggtagcctcta-------------gaagctggaagaggcacggaagtgaattctccccagagcc--tccagaaagaagagactcttgctgacgcc------ttggtttagtccagtgaaacccatgtgggacttctgatttccaaaactgtaagataataaa--------tgtgtgttgctttaagccactaagtctgtggtaatcggctgtagcagcaataggaagcaaatacaGGGAT----------GAACATCTAAAGAGCAGGCCAGGAGACAGGCATTCCGGAAGTCTCAGGAAAAACACGCTTTCTACTG----------CTCCtgttgggtgttgtcgatcagccaagatgagggctgagaactgacgccaggg--ttagcctttgccggtaacat-------cagc-----aaaagcatgttta-----------------------------------------------------------------gtggaataggggaggtgaaagctagcttagcgaggactcaggaaagactaggaagagaggaagtggagacgg-aagactgtgttcctagaggggcatcttgaaaaagagcagagagacagccagcagctg-----gggggCCCTGGCCGGCAGGA-----GAGGGGACAGCA------TGACTGTTGTTGAGGGTGGCCCCACTGAGGGGGCAACCAGAGCTCCTGGCCAGC-CTGGAGTcggggatgaggggtgggtctggctgggcaggcacagttgggtgggaagatggtg-----tggtcggagcacgtggaca------------ttcttttctgattgcttctattttctcagtgagatgggaaacaatcatcTCCTTT----TTGCTAAATGTGCTGAGCAGGCTTGAGGGATGCCTGGACTTCAGCAGGAAGCGATAGTCATGCCTCGCACATGCAGCTTTCAATCCTGTTTGGTTGGAGAAATAATATACCGCCCAACTAGTTTGTTTTAAATAAGACAAACACCCCGGAGCCTGCCTGCTGCTAGAG----------ACGGCTCTGTTTGGAGTGGGGCTCTCGGCGGTGCTGAGGTCAGCTCTGTTTGACATTCCTGATGTGTGAAGGGAGCACTTAGGACACCACCACCAGGCCACGGGCGTGCAGCTCCCTGGAGCTGCTCCAGGGGCCCTGCCTG s mm5.chr11 121464585 1402 + 121648857 TTTGTAAACTTGAACTTAATAT--TAATGGGTTAGATTTCTATAGATGCTGGGATTATGTGAATGAATTTTATGTATAAAATTTTGGAGACCGGG------TTGTGATCAGCATAACAATTATCTCCAAAGAAACCAACATCCTAGTCCCCAAAGCTGTCACTATGCTGTGCTATATGTCAAAAGAGGTTTTGCAGATGAAAATGAG-AAAAGATGATGAGATAG-------TTCTGAAAGAGTTA------------------CAACATCTTTA-AAAAAGGGAACAATACTATTAGCACCAGAGTAGATGTAAGGACAGAAGCGGAGGTCGGAGGGGTGAGATTGGCTTGGAAAGGGAGGGAGGGATCATGAAGCATGG-------------------------------------------------GCAGCTGGGAAAGTC-CAGAATTAAGGTTTCACTTGGATCTTTTTAGGAAGAGGGTGATCTTGCTAAATCCTGATTTTTTTTTTTTCCCAGAGAAGCTGTTTTTGGAGTTCTGTTATTCAAAACCATGAGATCACATACAGTTTTTTGAAAGTTGTTTGAAGCCACTAACTTTTCAATGGCTTGTTTTAGCAGAAGTAAGAAAATAATACAGGGCCATGGTGACGAGAACAGCTAAAGAATAGGCCTGGAAAT----------GAAGTTA-AGGAAGAACTCATTTTCCATAGGGCATGATACCCTGTGTGGGATGTCGCTGATAAGCTGAAA-GAACACTAAGATTTGATGCCCAGA--TGGCAACTGGTAGGCCACTTATGAGCCCAGCTAAAAAAAATTGTGTGTG----------------------------------------------------------------TGTGTAATGGAGAAGATAACGTCT--CCGGGAAAGGATTAAGAAAAGTGTAGGA------TATGTGAAGATGACAATACTATCTTCTTGACTGT---TCCTAGTAAAGGGC--AGAGACAGTCAGTGG--------------CCAAGCCTGCAGGCTTTGTATGGTGACCCCATTGACCTGACTGGTGTGGAGG--GACCCAGCTTGGAGGAGGATCA------CTGTCAAGCTCCTGAATTAAGGAAG---TTCTAGTCTGGGTGTGTTCACAGAGTTGGCTAGGGATCAGGAGATGCCTGGAGGAAACACATGGAAATCTTTTTTTTTTTTTTTTTTTGATTCCTTCTAATTTTTCAGTGAAATGAGAAACAATCATCTCTTTTCCACTTGCTAAATGTGCTGAGCAGGCTTGAGCGATGCATGCAGTTCA----GGAGCAGTAGAGATG-GTTGTGCATGCAGC-GTCAATAGTATTTGGTTGGAGAAGTAATACACCATCCAACTAGCTTGTTTTAAACTAGACAAACACTCCAGA-TCTGCCTGCTGCTGGAGAGCACAGCCCAGGGCTCTGTTTGGAGTGGGGCTCTCAG-GGTGCTGAGGTCAGCTCTGTTTGACATTCCTGATGTGTGAAGGGCG-GCTTAGAACAACAGCA-CAAGCTATGGGCGTGCAGCTCCCTGGAGCTATTCCAGAGGCCCTGCCTG s rn3.chrUn 70001496 1458 - 75822765 TTTATAAACGTTGTCTTAATATTACAATGGGTTAGATTTTTATAGATGCTGGAATAATGTGAATGACTTTTGTGTATAAAATTTTGGAAGTCGGG------TTGTGGTCAGCATAATAATAACCTCCAAAGAAACCAACATCCTAATCTCCAAACCTGTCACTATGCTGCATTATATGTCAAAAGATGTCTTGCTGATGCAAATGAG-AAAAGA---TGAGATGG-------TTCTGAAGGAGTTA------------------CAACGTTTTTT-AAAAAGGGAACAATACTATTGGCACCAGACAAGACTTAAGGACAGAAGCAGAGATCAGAGGGATGAGATTGGCTTGTAAAGAGAGGGAGGGACCGTGAACTATGAATGAGATTGGCTTGTAAAAAGAGGAGGGACCCTGAAGTATGAAGCATGGACAGCTAGGAAAGTC-CAGAATTAAGGTTTCACTTGAATC-TTTCAGGGGGTGGGTGATCTTGCTAAATCC------TGATTTTTGCCCAGAGGAGCCATTTTTAGAGTTCTGTTATTCAAAACTGTAAGACCACTTACAGATTTTTGAAAGTCATTTGAAGCCACTAACTTTCCGATGGCTTGTTTTAGCAGAAGTAAGAAAATAATACAGGGCCATGGTGATGAGAACAGCTAAAGAATGGCCC------TGGAAAT----GAAGTTA-AGAAAGAATTCATTTTCCATAGGGCGTGATGCTCTGTGTGGGATATTGCTAA-----------GAACACTAAGATTTGATGCCCAGGCTTGGCAACTGGTAGGCCACTTAAGAGCCCAGC-----AAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGTGTGTGTGTGTGTGCGTGTAAAATGGAGGAGATAAAATCT--TAAGGAAAGGGTTAAGAAAAGTGTGAAA------TATGTGGAGATAACAATACTGTCCCCTTGACTGT---TCTCAGTAAAGAGC--AGAGACAGGCAGTGGCCAAGCCTGAAGGCCTTATACAGT-GAC-----CCCCTGAAGTCA------TGACTGGTGTGGAGG--GACCCAGCTAGGGAGAGGATTC------CTGTCAAGCTCCTAAGTCACAGAAG---TGCTAGTCTGGGT------------------------AAGGAGATGCCTGGAGGAAACACATGGAAA---------------TCTTTTGATTCCTTCTAATTTCTCAGTGAAATGAGAAACAGTCATCTCTCTTCCACTTGCCAAATATGCTGAGCAGGCTTGAGGGATGCAGGAAGTACA----GAAGCAGCAGAGATG-GCTGCGCGTGCAGC-TTCAGTATTATTTGGTTGGAGAAATAATACACCATCCAACTAGCTCGTTTTAAATTAGACAAACACTCCAGAGTCTGCCTGCTGCTGGAGAGCACAGCCCAGGGCTGTGTTTGGAGTGGAGCTCTCAG-GGTGCTGAGGTCAGCTCTGTTTGACATTCCTGATGTGTGAAGGGCG-GCTTAGAACAACAGCA-CAAGCCATGGGTGTGCAGCTCCCTGGAGCTATTCCAGAGGCCCTGCCTG a score=2549.0 s hg17.chr17_random 2063236 10 + 2618010 AGAAATGTTC s panTro1.chrUn_random 4109718 10 + 240967748 AGAAATGTTC s mm5.chr11 121465987 10 + 121648857 AGAAATGTTT a score=135715.0 s hg17.chr17_random 2063246 1046 + 2618010 CAGTCCTTGAAATTTCTCCCCAGTTTTAAACATCTGTTGGTGCTTGTGGAAAATAAGGTCGGGATTGTTGTGCTCACCGCCCGTGAAAGCTGCCATTGCACGGT-CTGTAAAGTGCTGGTGATGAACACTTCACACCGACAGGCTGAGCCTCGGCCCTGGCCACGTCGCTGGGGCCCAGCTTCTGATCAGTCTGTATGGTTCAGCTCTCCGTGGAGTTAAGTCATGACAACCAAGGAACACAGGCATTTGAGGGGATAGCTCTGTTCCCTCCGCCATGTCCTGGGGCGAGCTGTGTAGAC-----GTCTGTTATCTTGATAAACCCAAACCTCTTGGGGCCAGGTGCCCTGTGCCT--TCCT--TTGTCCTTCTGTCCACCTGGCCTTCCATGAGCCTCTGGGGTG-------GGGC-TGTCTCCTTTCTC---TCCTGACTTCCCAAAGCACAACTGAAAGCAAACTCTTCCACCCACCATGAGTCTCATTCCATCTCTCCAGTGGGCGAGACACG---TAGTGTTTTGTTTTATTTCATTTGCTTTG--TTTTTTCAATCAAGCTGAGGCCAGCTTGGAGGCCTGTTTTCCTTGGGATGGTGGACACATGGATCTCAGGAGTTTGGGGGTGCCCC-TTCTGGTCGCAAGGGACCTTCTGGACCCTGTGCCTCCCTCCCACCAGCCTCCCCTGACACCGCCTCCGTGCTGCTCCTCTCCCGGTGGGCTCCACCCTCACTAGGGCTTCAAACCTGGAATGCTCTTTCCTGGCCTCCTGCCTGTCCCCTTCCCACCAAGCCC----CCCAGTTCCTGCTGAGTGCCACTTCCTGGCTCAGCTGCTCCCATCCAGTGCTGGG--CTCAGCCTCGTCACCCACGCCCCACCATAAAGGGTTCTTTACAGCAGATGGCATCGCTGTCGGCCCCCCAACCGG-AGGCGCCCTTCAGGGCAGGAGCCTGTTTC----TTGTGGAAGTGTCTTAAGCCCTAAAACGGTGCCCAGTGCACAGTTAAATAAAAATCAGAGCCCCAAGAGCAAACCTTAGCCCCTCAC---------GGTGACTACAGCCCTTCCAAAGAGGG s panTro1.chrUn_random 4109728 1047 + 240967748 CAGTCCTTGAAATTTCTCCCCAGTTTTAAACATCTGTTGGTGCTTGTGGAAAATAAGGTCGGGATTGTTGTGCTCACCGCCCGTGAAAGCTGCCATTGCACGGT-CTGTAAAGTGCTGGTGATGAACACTTCACACCGACAGGCTGAGCCTCGGCCCTGGCCACGTCGCTGGGGCCCAGCTTCTGATCAGTCTGTATGGTTCAGCTCTCCGTGGAGTTAAGTCATGACAACCAGGGAACACAGGCATTTGAGGGGATAGCTCTGTTCCCTCCTCCATGTCCTGGGGCGAGCTGTGTAGAC-----GTCTGTTATCTTGATAAACCCAAACCTCTTGGGGCCAGGTGCCCTGTGCCT--TCCT--TTGTCCTTCTGTCCACCTGGCCTTCCATGAGCTTCTGGGGTG-------GGGC-TGTCTCCTTTCTC---TCCTGACTTCCCAAAGCACAACTGAAAGCAAACTCTTCCACCCACCATGAGTCTCATTCCATCTCTCCAGTGGGCGAGACACGC--CAGTGTTTTGTTTTATTTCATTTGCTTTG--TTTTTTCAATCAAGCTGAGGCCAGCTTGGAGCCCTGTTTCCCTTGGGATGGGGGACACATGGATCTCTGGAGTTTGGGGGTGCCCC-TTCTGGTCGCAAGGGACCTTCTGGACCCTGTGCCTCCCTCCCACCAGCCTCCCCTGACACGGCCTCCGTGCTGCTCCTCTCCCAGTGGGCTCCACCCTCACTAGGGCTTCGAACCTGGAATGCTCTTTCCTGGCCTCCTGCCTGTCCCCTTCCCACCAAGCCC----CCCAGTTCCTGCTGAGTGCCACTGCCTGGCTCAGCTGCTGCCACCCAGTGCTGGG--CTCAGCCCCGTCACCCACGCCCCACCATAAAGGGTTCTTTACAGTAGATGGCATCGCCGTCGGCCCCCCAACCGG-AGGCGCCCTTCAGGGCAGGAGCCTGTTTC----TTGTGGAAGTGTCTTAAGCCCTAAAACGGTGCCCAGTGCACAGTTAAATAAGAATCAGAGCCCCAAGAGCAAACCTTAGCCCCTCAC---------GGTGACTATAGCCCTTCCAAAGAGGG s mm5.chr11 121465997 849 + 121648857 TAGT-CTAGAGATTCCTCCCCAATTTTAAACATCTGTTGGTGCTTGTGGAAAATAAGGTTGGGATTGTTTTGCTCACAGCCC-TGGAAGCT-----------GT-TTGCAAA--GCTGATGATGGATGCTATACA-------------CTTTGGCTCAAGTTAAGCAGCAGGGTCCCACCT----GTTTGTTGGTACAGTTCAGCTGTTCCCAAGATTGTGCAGGG---ACTGAGACACATAGGCATCAATGGG----------------------TTCCCCGAGGTGAGCTGTACTGGCTTTCGGCTTGATACTTCTCTGCACTCAGATTGCTTTCGGTTACATGCTCAGTGCTT--CCCTGCTTCCTCTTCTGTCTACCT--------------TTGTAGAGTGTTAGAGTGAGC-TGCTTCACTTCTTACGTACTGG-TTCCCTGAGCACACATCAAAGCAAACT-------------TAAATCTCACTTCACATCTCCAATAGGCCAGACATAT--AAGTGTAGCATTTTACTTTAT----------TATTTTTAGTCAAGTTGAAGCCAGATTGGAGTCCCATTTTCCCTACGATGATGAAAATATGAAACTCGGGCATTGCAGGTCACCTTACCCTGATCTAGAAAGACCATCTAGATCCCGAGTTGCCTCTGTTCTGGCCTC-------------------CTGCTTTTCTAATGTTAGGGTCCTCTCT---------------------------TTCCCTGGCCTCCT--CAAGCACTCTTCCACCAAAGCTATGGTCCAG-CCTTGCTGATAGAC---TCGTGG------------------GTGCTGGGTACTGATCTTCATGAGCTGCCCTTCTCTATATATGGCCCCCTA------------------------TCCTGACTGG--GGTGCCCTATGGATC------------------------AGTGCCTTTGCCC----ACTGATGTGCAGTATATGGATGGGGAATAAT---------GAGAATAAGCTTTGGCCCCTTA----------AGTGACTGTAGATCACCTAAAGAAGG s canFam1.chrUn 6371043 857 + 91062872 CGGGCCCTGAGGCTCCGCCCCGACTTCCAACATCTGCTGGTGCTCCTGGAAAATGAGGTCGGGGTTGTTTGGGT--CTGGCCACGCCAGCTGCCACGGGCCAGTGTTTTAACGCGTTGGTGACGGATCCTTCACA--------------CGCGGCCCAGGGC-----GCAGGGCCCC------------------------CGGCCCCCAGAGAGCT-----CCTGACGCCCCGGAGCC-------------------GCTCTCTGCCCTGTCGCAT---CCTTGGTTAGCTGCGTAGGC-----GTCTG---------TGCTCCCCAGTGTCTGAGGCACTGGAGGCCGGAGCCCGGCCCG--TCGTCTGTCCGTCTGCCC-------------------GAGCG-------AGGCGTGGCTTCCGTCGC-----------------------------AGCAGACCCTTCCCCGCACCAAGCGTCTCATGCC---TCTCCAGCGAGCCAGGTATGTCATAGCTTTTTGTTTTA-TTCACTTGTTTGGTTTGTTTTAAATCAAGCTGAGTCCCATTTGCAGCCCCATCTCCCCTGAGGTGGTAGCAGCGTGCGCTGCAGGCGCCGACGGGTGCCGTTTCCTGGTCTTGAGGGAACTT-TGGACCCAGTGTCTCCGCT------GCCCC---------CGTCTCCTCACTGCTCCTCC--------------TCCTCGCTCGAGCCGAGGTGCTGGAGCGCTCGTCCCTGGCATCCT-----------TCCCACTGAGGCT--------G-CGCTGC-----------GCCTG------CTGACCCCAGGCTGCCCTGGC--CGGAGC-TCGGCAGGAGCGT----CTGTGAACGGCCTCTTG-----------ATCGTGGCATTTCTCCCTGCTGGAAGGTGTCCTTCTGGACAGGGGTCTGTGTCTGTTTTATGGATTTGTCACAAACCCTAGACAAAT--CCACCTGGCCGTCAGGTAAAAATAAGAAGCCACGTGGCAAATCTTGGCTCCTCCCTGACCACTGGGTTACAGCATTATacacacacac-- a score=6334.0 s hg17.chr17_random 2064292 44 + 2618010 GCCATAT-CACGTGCACAGTGACCCTCTCCACGTGGGTCCCTTGG s panTro1.chrUn_random 4110775 44 + 240967748 GCCATAT-CACGTGCACAGCGACCCTCTCCACGTGGGACCCTTGG s canFam1.chrUn 6371900 44 + 91062872 -acacacacacacacacacacacGCTATACACGTGGGTCACTTGG a score=1810.0 s hg17.chr17_random 2064336 19 + 2618010 TTTGTGAGGGCCTTGGTTT s panTro1.chrUn_random 4110819 19 + 240967748 TTTGTGAGGGCCTTGGTTT a score=2423.0 s hg17.chr17_random 2064355 30 + 2618010 GCAGGCCATAGACTGACACAGTGGCACCTG s panTro1.chrUn_random 4112873 30 + 240967748 GCAGGCCATAGACCCACACGGTGGCACCTG a score=20166.0 s hg17.chr17_random 2064385 218 + 2618010 GTGTGAGGGGAAGAGGGTGTGG--------------------------------------------------AGGCCACAGACCCACACGGTGGTACCTGGTGTGAGGGAAAGAGGGTGTGGGGGCCACAGACCCACACGGTGGTACCTGGTGTGAGGGGAAGAGGGTGTGGAGGCCACAGACCCACACGGTGGCACCTGGTGTGAGGGGAAGAGGGTGTGGAGGCCACAGACCCACACGGTGGCATCTGGTGTGAGGG-AAGAGGGTG s panTro1.chrUn_random 4112903 269 + 240967748 GTGTGAGAGGAAGAGGGTGCGGAGGCCGTAGACCCACACGGTGGCACCTGCTGTGAGGGGAAGAGGGTGCACAGGCCACAGACCCACACGGTGGCACCTGGTGTGAGGGGAAGAGGGTGCGTAGGCCATAGACCCACACGGTGGCACCTGGTGTGAGGGGAAGAGGGTGTGGAGGCCATAGACCCACACGGTGGCACCTGGTGTGAGGGGAAGAGGGTGCGGAGGCCATAGACCCACATGTTGGCACCTGGTGCGAGGGGAAGAGGGTG s rn3.chr3 13898878 218 + 170969371 GCGAGTGGGAAACGGGAGACAG--------------------------------------------------AGGCCCCGCCCCTGCAGAGAGCAGCAGTGCATGTGGGAAAGAGGATGCAGAGGCCCCGCCCCTGCAGAGAGCAGCAGTGCGAGTGGGAAACGGGAGACAGAGGCCCCGCCCCTGCAGAGAGCAGCAGTGGGAGTGGGAAAGAGGATGCAGAGGCCCCGCCCCTGCA-GAGAGCAGCAGTGCAGTGGGAAAGAGGAGA a score=2986.0 s hg17.chr17_random 2064603 19 + 2618010 TGGAGGCCACAGACCCACA s panTro1.chrUn_random 4113172 19 + 240967748 CGGAGGCCATAGACCCACA s rn3.chr3 13899096 19 + 170969371 CAGAGGCCCCGCCCCTGCA s canFam1.chrUn 6372940 19 + 91062872 TGGGAACAGCTGGCTGACA a score=8799.0 s hg17.chr17_random 2064622 49 + 2618010 CGGTGGCACCTGGTGTG-AGGACCTTCTGAAGGTACCCGTGGGTGAGGGG s panTro1.chrUn_random 4113191 49 + 240967748 CGGTGGCACCTGGTGTG-AGGACCTTCTGAAGGTACCCGTGGGTGAGGGG s canFam1.chrUn 6372959 50 + 91062872 TGGTGGCCCTTGGGGGACGGGGTCTTCTGAGGGTAGCCGTGCGTGGTGGG a score=0.0 s hg17.chr17_random 2064671 26 + 2618010 ATCATTTGGATGGATTGCAAAATGGC a score=555.0 s hg17.chr17_random 2064671 6 + 2618010 ATCATT s panTro1.chrUn_random 4113240 6 + 240967748 ATCATT a score=3045.0 s hg17.chr17_random 2064677 20 + 2618010 TGGATGGATTGCAAAATGGC s panTro1.chrUn_random 4113246 20 + 240967748 TGGATGGATTGCAAAATGGC s mm5.chr11 121467398 20 + 121648857 TAAATAGATTAGGACACAGC a score=21513.0 s hg17.chr17_random 2064697 108 + 2618010 CATGTGGCTTTAGTGACACCTTTAGGATGTAATAAACTTCAGAGTCAACCTTAATTCTGGGAGAGAGACATCTTCACTTTTCTGGTGCCATAACTGCCTCTTTGTGGA s panTro1.chrUn_random 4113266 108 + 240967748 CATGTGGCTTTAGTGACACCTTTAGGATGTAGTAAACTTCAGAGTCAACCTTATTCCTGGTAGAGAGACATCTTCACTTTTCTGGTGCCATAACTGCCTCTTTGTGGA s mm5.chr11 121467418 105 + 121648857 CACATAGTGAGAGTGACACTTGTAG---ATTATAAGCTCTTGCATTAACCTCATTCCTGGGTAAGGCCTGTCCTCATGTTCCTGATTTAGTGCCTGCCTCTCTGTGGA s canFam1.chrUn 6373009 86 + 91062872 CATATGACATCTGACACATATTTAAGTTATAATAACTTCTAAAGTCAACCTCATTCTT--------------------TTTCTGGTGCAGAAACCAC--CTTTGTGGA a score=21665.0 s hg17.chr17_random 2064805 173 + 2618010 ACGCAAAGCAAAACTAAAGTCATTTTTCTTGTTTGTTTTTAAGGCCCTTCAGGCTCTAGGGTGAGTTTCTGGTTTGAGGGGAAGGCCTTTCCTCCTGACTCCA----GCCCTCCTTGACAAGGTCTCCGTAAAGCATGCTTTCTCTTAGGGACCCTCAGAGGGAGGCTTGGTGGGGA s panTro1.chrUn_random 4113374 173 + 240967748 AAGCAAAGCAAAACTAAAGTCATTTTTCTTGTTTGTTTTTAAGGCCCTTCAGGCTCTAGGGTGAGTTTCTGGTTTGAGGGGAAGGCCTTTCCTCCTGACTCCA----GCCCTCCTTGACAAGGTCTCCGTAAAGCATGCTTTCTCTTAGGGACCCTTAGAGGGAGGCTTGGTGGGGA s canFam1.chrUn 6373095 139 + 91062872 ------AACACAGATAAAGCCATTTGGTTAGTTTGATGTTA---------AGGTTTTAAGGTGGGTTCCTGGTCTG-GGGGAGTTTCTGTCCTTCTCACTCTCACGTGCTCTCTGTGGCGAGGTCCTC----------------------AACACTGGGCTAGGGGTGGGGTGGGGG a score=14063.0 s hg17.chr17_random 2064978 159 + 2618010 CATGGGGTCAGGGACATCATCAAATGCTAGACGCCCGGCTGGGGCTGCCCCGAGGGCTCTGAGAGGAGGGGGCAATCCTGCGTGGCCAGGTGGGTGGTGAGTGTGACCTGGGTGGTTGGCAGTGGCTTCCGTCCAAGGTCCTGGCCAGGAGCGGAATCC s panTro1.chrUn_random 4113547 158 + 240967748 CATGGGGTCAGGGACATCATCAAATGCTAGACGCTCAGCTGGGGCTGCCCCGAGGGCTCTGAGAGGAGGGG-CACTCCTGTGTGGCCAGGTGGGTGGTGAGTGTGACCTGGGTGGTTGGCAGTGGCTTCCGTCCAAGGTCCTGGCCAGGAGCTGAATCC a score=9852.0 s hg17.chr17_random 2065137 90 + 2618010 CACAGCCACGGCAGGCCATTAGTGGCTGAGTGA---AGTTTG-----TTCAGGGTGGCCTGACCAAAGGCAGGCCCTGAGGACAG--CTGTTGCTGGCTC s panTro1.chrUn_random 4113705 90 + 240967748 CACAGCCACAGCAGGCCATTAGTGGCTGAGTGA---AGTTTG-----TTCAGGGTGGCCTGACCAAAGGCAGGCCCTGAGGACAG--CTGTTGCTGGCTC s canFam1.chrUn 6373389 97 + 91062872 CACGCCCAGGGAAGGCCACCCCTGGCACCATAAGCCAGCTGGGGCACTTCCACGTGGCAAG---GGTGGTGGGCCGTGGGGGCAGAACAGCTGGTAGCCC a score=1945.0 s hg17.chr17_random 2065227 8 + 2618010 TTGGTGGA s panTro1.chrUn_random 4113795 8 + 240967748 TTGGTGGA s mm5.chr11 121467550 8 + 121648857 TCAGTGGG s canFam1.chrUn 6373486 8 + 91062872 ACGGCAGA a score=7424.0 s hg17.chr17_random 2065235 49 + 2618010 AAGAGGCTGAGGCCAAAGGGTTTATAGGTGTTCAAATTGGAAAGTGGAA s panTro1.chrUn_random 4113803 49 + 240967748 AAGAGGCTGAGGCCAAAGGGTTTATAGGTGTTCAAATTGGAAAGTGGAA s mm5.chr11 121467558 49 + 121648857 ATGAGGCTGAAGCCAAAGACCTTCAAGGCATCTACCTGGGTAACTTGGG a score=1575.0 s hg17.chr17_random 2065284 5 + 2618010 CAGGA s panTro1.chrUn_random 4113852 5 + 240967748 CAGGA s mm5.chr11 121467607 5 + 121648857 GAGGA s canFam1.chrUn 6373521 5 + 91062872 CATGA a score=25195.0 s hg17.chr17_random 2065289 209 + 2618010 GACCTAAGTAC-----GCTCCCTCTGACCAGGTTAGGGGGTACTGATGGGGAGTCCCTCAGTAGAGGCAGGGGCCACCTCTTCTGACCCCAAGGGAC-------------CCAGGCCAAGAA---GGAGCCCCCTCTCCCCCAGGGCCAGGGGGACCCCAGCCTGCCCCACACTGGCACTTTGCAGCACCAGGGAGAGACCAGGCCTC-CTCTGGGACAGGTTCCAGGCTT s panTro1.chrUn_random 4113857 209 + 240967748 GACCTAAGTAC-----GCTCCCTCTGACCAGGTTAGGGGGTACTGATGGGGAGTCCCTCAGTAGAGGCAGGGGCCACCTCTTCTCACCCCAAGGGAC-------------CCAGGCCAAGAA---GGAGCCCCCTCTCCCCCAGGGCCAGGGGGACCCCAGCCTGCCCCACACTGGCACTTTGCAGCACCAGGGAGAGACCAGGCCTA-CTCTGGGACAGGTTCCAGGCTT s canFam1.chrUn 6373526 204 + 91062872 AAGCCACCTACCAGCGGCTCCTGGTGCTCAGGT-----GCTCCTGA---------CCTCGGT-----CAGAGGCC------TCAGAGCCCCCGGGATGGTCTAGTTGGAACTGGAGCAGGGAGTCGAAGCATACGACCTTCTGAGGCCTGTGAGACCCCAGCC--CATCACACTGGCCACTTGGAGCATCAGGGAGGGGCCAGCCCCCTCTCTGGGACGGACACCAAGGTC a score=39548.0 s hg17.chr17_random 2065498 417 + 2618010 -ACGGGAGCTTTGGTCAGAGGGGCAGCCACCCCTGCCCACTCTAAGAACGTGACCCCAGAAAGGGGCA---------TC---ATTTCTTCAACAGAAGAGGAGGCGAGA--TGAGCTTGGTGCCAGTTCCACGGAGC--------------------------------------------------------------------------------------CACAGTGACATAACCCTCCGAACATTCGTGACCAACCACGGAGCACAGTGACATAAACCTCCAAACATTCATGACCAACCTCGATTATACAGTCACACCCAGCCCCGAGTGGATTTACCAGAGACAGGATGTTCCCCACCAGGCTCTCCCACTAGGCAGATCCTCAGCACTTGGCTCAAGAG----TGGAACAGAC-----CCCACTAGCCATTGCAGGCCGTTGGGCAGGCAGCCCTCCGACCTCAGCCCATGTGCATATGGGGTGGGGGACCCGTGGGCAAAAC----TTGGGGTCCTAACCT-GGG s panTro1.chrUn_random 4114066 504 + 240967748 -ACGGGAGCTTTGGTCAGAGGGGCAGCTACCCCTGCCCACTCTAAGAACGTGGCCCCAGAAAGGGGCA---------TC---ATTTCTTCAACAGAAGAGGAGGCGAGA--TGAGCTTGGTGCCAGTTCCACGGAGCCACAGTGACATAACTCTCCGAACATTCGTGACCAACCACGGAGCACAGTGACATAACCCTCCGAACATTCGTGACCAACCACGGAGCACAGTGACATAACCCTCCGAACATTTGTGACCAACCACGGAGCACAGTGACATAACCCTCCGAACATTCGTGACCAACCTCGATTATACAGTCACACCCAGCCCCGAGTGGATTTACCAGAGACAGAATGTTCCCCACCAGGCTCCCCCGCTAGGCAGATCCTCAGCACTTGGCTCAAGAG----TGGAACAGAC-----CCCACTAGCCATTGCAGGCCGTTGGGCAGGCAGCCCTCCGACCTCAGCCCATGTGCATATGGGGTGGGGGAACCATGGGTAAAAC----TTGGGGTCCTAACCTGGGG s mm5.chr11 121467633 339 + 121648857 -ATGGAGACTTTGGACAAAGGACCAGACACACTTGTCCACTCTGAGAACCTAATCTCAGAAAAGAAAG---------TCTG-GTTCTATTGACAGACCCCGAGAAAAGATGTGAGCTTGGTG-----------------------------------------------------------------------------------------------------------------------------------------------GCATGATGGCATATTCCTCTGAACACTAATGATGGATGTGAATTCTACAGTCATACCAGAATT--AGTGGCTTTACT-GAGAAAGAAGGT-----GCCAGACT--------------------GGTACTTGGTTTGAGTGCAGATAGACAAGGA-----ATCATTAGC---TGTAGGGCACTGGGCAACAACTACTCTGCCTTGGTCCCATCTATAAAT--AGTTGAACAGCTATGGATAAGATGTAGTTAGTATCCATACCT-AGG s canFam1.chrUn 6373730 347 + 91062872 AGCGGTGGCTTTGG-CAGAGGTGTGGCCACGTCTG-CCACTTCAACAA--------TAGAAAGGAGCAAGTGGCACTTCTGTGTTTCCCAAGTAGAAGGGGAGGTAAGG--CCA--CTAGTGTCAACTCCGTAGAGT--------------------------------------------------------------------------------------GACGAGGGCATAGATCCCC--------------------------------------------AACATCTGCGAGGGATCTCGATTAGACA--CACACCCAGGGCTGCGTGGGTCTGAGGAAGATGGGAACTTGAGCGCCACCGT-CCCTACTAGGCTGGGCCC-GGCACCCAGCGGCAGAG----AGGGACAAACCTGCACTCACCAGC---CACAGGGCCCTGGACAAA----CCTCTGCCCTCGGT--------------GAGTCAGGAGCTGCGG-----------GCGGGGTCCTGGCCC-GGG a score=7586.0 s hg17.chr17_random 2065915 97 + 2618010 GGGGTCAAACCCTCCACACGCAAGTCCTGGTCAGAATCACTCAGAACTGACCCTcccctgtgccagcccctcccctgtaccagctcct-cccctgtgc s panTro1.chrUn_random 4114570 80 + 240967748 GGGGTCAAACCCTCCACACGCAAGTCCTGGTCAGAATCACTCAGAACTGACCCTCCCCTGTGCCAGCCCCTCCCCTGTA------------------C s canFam1.chrUn 6374077 78 + 91062872 AAGGTC--ACACGGGGCATGGGAGCCCGGGGCAGAGTTGCTTAAAACT--------------CCAACCACGTCCCTCCA----CCCTTACCCCTGTGC a score=9843.0 s hg17.chr17_random 2066012 136 + 2618010 cagcccctcccctgtaccaagcccctcccctgtaccagctcctcccctgtacc-agcccctcccctgtgccagctcctcccctgtgccggcccctcccctgtaccagctcctcccctgtaccagccccTCCCCTGTA s panTro1.chrUn_random 4114650 135 + 240967748 CAACCTCTCCCCTGTACAAAGCCCCTCCCCTGTACCAGCCCCTCCCCTGTACCAAGCCCCTCCCCTGTGCCAGCCCCTCCCCTGTACCAGCTCCTCCCATGTACCAGCCCCTCCCCTGTA-CAGCTCCTCCCC-GGG a score=6670.0 s hg17.chr17_random 2066148 45 + 2618010 CCAGCCCCTCCCCTGTACCAAGCCCCTCCCCTGTACCAGCTCCTc s panTro1.chrUn_random 4114785 43 + 240967748 CCAGCCTCTCCCCTGTAC--AGCCCCTCCCCTGTACTAGGACCTC s danRer1.chr13 4691456 44 + 20521091 CCAGGCCCTCCGCTGCTCC-AGGCCCTCCGCTGCTCCAGGCCCTC a score=582.0 s hg17.chr17_random 2066193 6 + 2618010 ccctgt s panTro1.chrUn_random 4114828 6 + 240967748 CCCTGT a score=5811.0 s hg17.chr17_random 2066219 145 + 2618010 agcccctcccctgtaccagcccctcccctgtaccacctcctcccctgtgcaaagcccctcccctgtaccagctcctcccctgtaccagctcctcccctgtaccagctcctcccctgtaccagcccctcccctgtaccagccccTC s rn3.chr16 81768819 136 + 90224819 AGTCTCTTCCT-----CAGCCCCTCCCA-ACATCAGCCCCACCCCTAGGTTAA-CCCCTCCCCTACATCAGACCCTCCCCTACACAAGCTCCTCCCCTACATCAGACCCTCCCCTACACAAGCCCCCCCCAGGT--TAACCCCTC a score=7957.0 s hg17.chr17_random 2066364 66 + 2618010 CCCTGTACCAGCTCCTCCCCTGTGCAAAGCCCCTCCCCGTACCAGCCCCTCCCCTGTACCAAGCCC s rn3.chr16 81768955 65 + 90224819 CTCTACATCAGCCCCTCCCCTACACAAGCCCCTCTCCTATACAAGCCCCTCTCCTACACC-AGCCC s danRer1.chr13 4691500 66 + 20521091 CGCTGCTCCAGGCCCTCCGCTGCTCCAGGCCCTCCGCTGCTCCAGGCCCTCCGCTGCTCCAGGCCC a score=899.0 s hg17.chr17_random 2066430 24 + 2618010 CTccccagtaccagctcctcccct s rn3.chr16 81769020 23 + 90224819 CTCCCTA-CATCAGCCCCTTTCTT a score=1469.0 s hg17.chr17_random 2066603 45 + 2618010 TCCCCTGTACCAGCCCCTCCCCTGTGCAAAGCCCCTCCCTTGTAc s danRer1.chr13 4691566 44 + 20521091 TCCGCTGCTCCAGGCCCTCCGCTGCTCCAGG-CCCTCCGCTGCTC a score=852.0 s hg17.chr17_random 2066769 23 + 2618010 agctcctcccctgtaccagc---ccc s mm5.chr11 121467996 26 + 121648857 AGTGCCTCTCCTTTAACAGCTTTCCC a score=-9686.0 s hg17.chr17_random 2066792 191 + 2618010 CAG--ACCCTGAACAGCACTGGCCACTACACGGAGCCACCACCCTGGCCCTGGCC---TGGGTGGGTGGGGGTCCCCCGGGGAGCACAGCGCAGTGCTAGGGCCCCTGTAGCAGATTCCCAGGAGACACACACCCAGCTG---GGCCTGCTGACACTAGCCCTGCATTCCCACACCCCCTCCC--CTGGCCCTCTCAGCTG---- s mm5.chr11 121468022 166 + 121648857 TAGCTAGCTTGCTTAGTACTGGCCTCTGTGTGGAGTATTACTGGTAGATCTGGTCCACTGATTA---------CCTCTCAGGAGTAGGGC-CAGTGCTGGAGACATGATGGCAGATCCCCAGGTGATATAATCTCA--------------------TACCCCT-CATCTGTATAACCTCATACATCTGACTCCATTA-------- s danRer1.chr13 4691610 105 + 20521091 CAG--GCCCTCCGCTGCTCCAGGCCCTCCG-------------------CTGCTC-----------------------------------------------------------------------CACGCTCCACGCTGCATGGTCC--------TGGCCCTCCATCCCTCCCCCAGTTCCGCCTCCGCTCCACCTCCCGCCTG a score=1012.0 s hg17.chr17_random 2066983 57 + 2618010 CCTTGTCCTCTC-CTGGTC-AGCTGCCTGGGGACACTGTCGCGATGCCTGGCCCCTGAC s mm5.chr11 121468188 57 + 121648857 --TTAACCACCCACTGATTGAGTTGTATTTGGATTCTTTTGTGATGCTCAGATCCTGAC a score=14238.0 s hg17.chr17_random 2067040 113 + 2618010 CTTGCCCGAAGCTCCTCGGT-GTCTGGACATTCAGCCCGACATGctctgaggtttggggc-aggtccagcactctgtgggtccaccccatcagccctcagggtgggactcatgca s panTro1.chrUn_random 4115256 114 + 240967748 CTTGCTTGAAGGTCCTCGGAAGACTGGACGTTCAGCCCAACATGCTCTGAGGTTTGGGGC-AGGTCCAGCACTCTGTAGGTCCACCCCAACAGCCCTCAGGGTGGGACTCATGCA s mm5.chr11 121468245 109 + 121648857 -CTGATCTTGACATTTTGGC-ACCTAGATA--CAGCCTAACATGCTCTGCTGTTGGGGGTGAAGGCTGGTATTCTGT--GTTCACTCCATGAGCCTGCAAAGTGGGACTAACTCA a score=7016.0 s hg17.chr17_random 2067153 75 + 2618010 gccacagtttgagaGTTCCAGGAACCACAAGTCCTGAGTCAGCGGGCACCTGACCCCTTATGTCACCTGCCCCAG s panTro1.chrUn_random 4115370 75 + 240967748 GCCACAGGTTGAGAGTTCCAGGAACCACAAGTCCTGAGTCAGCGGGCACCTGACCCCTTATGTCACCTGCCCCAG a score=3710.0 s hg17.chr17_random 2067228 20 + 2618010 GTGGAAGGAGACGCTACAGG s panTro1.chrUn_random 4115445 20 + 240967748 GTGGAAGGAGACGCTACAGG s mm5.chr11 121468435 20 + 121648857 ATGGAGTAAGAAGCTAGAGG a score=3181.0 s hg17.chr17_random 2067248 20 + 2618010 GACCAAGCATGGTTGGTAAA s panTro1.chrUn_random 4115465 20 + 240967748 GACCAAGCATGGTTGGTAAA s mm5.chr11 121468618 20 + 121648857 GGTCACACATTGTTAGTGCA a score=84940.0 s hg17.chr17_random 2067268 547 + 2618010 ----CGTGTGTGTGTATGTGCACTCACGCCTGTGTG--TTAAAATGCTTCAGAGAAAGAGCAGCCCAGGAACGTGGGGGTTGGACGGGATGTGGAGGTGTGGGCTGTGCCTAG-GGGTCCCTCCTGGGGCTGTGTGGGTGTGAGTGGA------GGACTGAGGAAAAGCCTCCTTACCCGGGAGTGTGTGGGGG-TGCTGTTTCTCGTATACTTTATTTCCTGTTTTAACACATGTGGGTGTCCTGAAA-TAAAAGCCGTTAG-CCGCCCACAAGAATGAGCAGGTTTGCTGGATCACAGTCCCCCACCCGGTGCCAGGCTGCCTGCCT-GGGAGACTCAGGGTCCTCCCCAATCCTGCCTCCCCACCTCCACACAAGG-GTGAATCTGAAGCCCCAGGCACCCACG-------CCAGGGGAACTGAGGTAGA----GCAGACCTCCAGCA---TCCCCCCGTGACCTGGCAGATGGCAGTGGACATTGCCCTCCCCAGACAC---CCCTGTGAGTTGTCAGCTCTGCCTG------------------CTGGGGTGGAGCCCCT---------GACTTGGGTGAGCCAAGGGTGGGGGGG---AGGGTGGT s panTro1.chrUn_random 4115485 546 + 240967748 ----TGTGTGTGTGTATGTGCACTCACGCCTGTGCG--TTAAAACGCTTCAGAGAAAGAGCAGCCCAGGAACGCGGGGGTTGGACGGGATGTGGAGGTGTGGGCTGTGCCTAG-GGGTCCCTTCTGGGGCTGTGTGGGTGTGAGTGGG------GGACTGAGGAAAAGCCGCCTTCCCCAGGAGTGTGTGGGGG-TGCTGTTTCTCATATACTTTATTTCCTGTTTTAACACATGTGGGTGTCCTGTAA-TAAAAGCCGTTAG-CTGCCCACAAGAATGAGCAGGTTTGCTGGATCACAGTCCCCCACCCGGTGCCAGGCTGCCTGCCT-GGGAGACTCAGGGTCCTCCCCAATCCTGCCTCCCCACCTCCACACAAGG-GTGAATCTGAAGCCCCAGGCACCCATG-------CCAGGGGAACTGAGGTAGA----GCAGACCTCCAGCA---TCCCCCCGTGACCTGGCAGATGGCAGTGGACATTGCCCTCCCCAGACAC---CCCTGTGAGTTGTCAGCTCTGCCTG------------------CTGGGGTGGAGCCCCT---------GACTTGGGTGAGCCAAGGGTGGGGGG----AGGGTGGT s mm5.chr11 121468638 530 + 121648857 ----TGGGTACATGCTTACATATGCACATATGTTCTCCTTAAACAGCTTCAGAGAAAA---ATCCCAGAAA--TGGGGGCAGA--GGAATGCA-----GTACACTGTGCCTGGTGGATCCCTTCTATTGCTGTACAGGAGCAGGTAGGACATAAGACCAGAAGAAGAGCCT-----CCCATGCGTATATGGGGA-TGCTGTTTCTCACATACTCAGATTCCTACTTTAACTTATGTGGGTATCCTGAAG-TGAAAGCTGCAAGACTTCTCATGTG-TCAAGCAGGTTTGGCTAAGGTCAGAACTTTACCC-------CACTGCCTGTTTGGGGAGGTATGAAACCCTTCCCAGGACTGTCTTCTCA-------ACATGGTGGGAGTCTGGAGCCCCAGGCACTCAGGTTCTGGTCCCAAGAAGCAGAGAAAGATACGGAACATCCAAAGCA---TCTCTT----------TAGGTTACAGCAGGTAATCTTCTGACAGGATGCTGACCTTATGTTGTGTCAGTTCTTCAGG------------------GCTAGGTAGA-CCCTT---------GATCAGAGTAAAGTAAGAGCAAAGGTC---AGCCTTGT s canFam1.chrUn 6374576 534 + 91062872 cgtgtgtgtgagtgtgcgtgtgtgcatatgtgtgtg-GTTTAAGCGCTTCAGGGGACAAGCAGCCCAGGAATGCGGGCCTTGGGCAGGACGCG--------GGCCGGGCCTGG-GGTCTCCCCGCGGGGCCGTGTGGGGGCGGGTGGAGCCGA-GGCCCCCGGAAGAGCCTCCT--GCCGGGAGTGTGTGGGGGATGCTGGTTCTCACACACTTTATTTCCTGTTGTAACACATGTGAATGTCCTGAAATTAAAAACTG-----GTCCCCATGAGAATGAGCAGGATTGCTGGG-CTCAAACCCTCCCCC--------GCTGCATGTCC-TGGAGA--CGGGGTGCTCCCCCGGCC-----------------ATCAG--CTGAGCCCCAGGACCTATGC-CTCATG-------GGTTGGGGACCGAGGGGGG----CGACCTTCCCCTCACGGCCCCCCCGTGAAGTGCC---------CAGGCCCGGCTCACCCAG--------CCTCGCGCTGTCTCTGGGTTCCCTGAACCTCTTCCCCGGGCCTCTGGAGGAGCTGCCCTGGGAGGCCGGGCCTCGGTGCTCCCCAGGTCAGGGGGTGAAGGGTGGC a score=5664.0 s hg17.chr17_random 2067815 62 + 2618010 GAACCAGCCGGCCCCC--------CAGGTTTCCTGAACCCTTTCTCAGTCTCCTGGAAGGGGCTGAGGGG s panTro1.chrUn_random 4116031 62 + 240967748 GAACCAGCCGGCCCCC--------CAGGTTTCCTGAACCCTTTCTCAGTCTCCTGGAAGGGGCTGAGGGG s canFam1.chrUn 6375110 65 + 91062872 GACAGAGACCCTCCCCTGTCGGGATGGATTGCTCGGGC-----AGCAGCACCCCGGAGGAGGCCCGAGGA a score=31850.0 s hg17.chr17_random 2067877 357 + 2618010 CCTGGCACCTTCCCACCAGAGcagtggtccccaacccttttgacaccagggacaggttttgtggaagacacttattctgtgggtgttggagagaagaagggatggtttccctctcagatcatcaggcattagattctcataaggagcggacaacctagatcccttgcgtgc--agttcacaataggg---------------gtcacgctcctgtgagaagtgaatgccgccgctgatccgagaggaggcggagctcagggtcaggccggtccaccgctcacctcccaccgcgcggccggttcctaacagaccacagcctggggacccctgctccagaggacggggaGTGTCTCTCTGTCATCCCCAACGGGCC s panTro1.chrUn_random 4116093 374 + 240967748 CCTGGCACCTTCCCACCAGAGcagtggtccccaacccttttgacaccagggacaggttttgtggaagacacttattctgtgggtgttggggagaagaagggatggttgccctctcagatcatcaggcattagattctcataaggagcagacaacctagatcccttgcgtgcgcagttcacaataggacacaataggagcgcagtcacgctcctgtgagaagtgaatgccgccgctgatccgagaggaggcggagctcagggtcaggctggtccactgctcacctcccgccgcgcggccggttcctaacaggccacagcctggggacccctgctccagaggatggggaGTGTCTCTCTGTCATCCCCAACGGGCC a score=5355.0 s hg17.chr17_random 2068234 79 + 2618010 AGTGATCCCGCTG------------------------GAGGGGCTGGGG---------CTGCACAGGACACAGGCTCAGCT-------GTGCTGCT-------------------GGCCA------------CCCATGACCCAATCAGAG- s panTro1.chrUn_random 4116467 79 + 240967748 AGTGATCCCGCTG------------------------GAGGGGCTGGGG---------CTGCACGGGACACAGGCTCAGCT-------GTGCTGCT-------------------GGCCA------------CCCATGACCCAATCAGAG- s canFam1.chrUn 6375246 151 + 91062872 CGTGCTCCCGCGGAGATGAGGACCCCAGGCCCCCCCTGAAAGGCTGGGGCACCAGCTTCTGCCTGGATCACGGTCTCGGCTGGAGCCAGGGCTTCTGAGGTCAGGACGGAGCAGGGACCAAGGACGAGGAGGCCCAGGCTGCCCTTGGGGG a score=75630.0 s hg17.chr17_random 2068313 843 + 2618010 GC-TCAGGTCAG------------AGGGCAAA--------GATGTCCACTGAAGCGGCTCCAGAAT----------------------------CCCTCAAGGA------------------------AGGTGACATCCG-----CTTCGCTTCCTCCTCCAGCCCCACCTTC---------------------GCTTCCG-GGACC------------ACAGAGCCC----CTGGAGCCTGCACGCCACGGAGTCT---------CCCACTGA----------GGAGTGAG---GAGGCCTCTTGT---------GGGGACAGATCTGGGTGAGTCAGGAGGCCCTGCGgggct-gggctgggctg----------ggctTAGGGGCTGG----AGCGGGGAGGGTTTCTCAGACTGG------------------AGTGGGAGACTTGA-----------------------------------GGTGGAGATGTGGGTTAGGTCAGGGTCAACCCTGAAAGATTGAGAATCACACGGGGCTGCTCACCTTGGGCGTGAGGAGCAAGGTCTCTGGGACTGACTAGGTGAAG--ACCGGTTTCCTGGGACG-GGCACGACAGG--GACTTG-AGACCCGTCTTAGGCTGTGTCAGGGCAGCTGAGAAACT-TGCTGGCTTGTGGGTCATGGAGCCCCAGGAGCC--------------GGTC-------GAGGTGCAGGAGGGGGCCTGGGTGGGGCTGAGTCAAGGGCTCCGGCC--AAGCCCCTGTGGCCCAGGCGGTATTTGTTTATGCCT---CATGGCCGGGAGGAGCCACTGCCTTCACCACATCCCACCGGGGTGGGGCGG---GTACCACCCTCTGGGACAGGGAA----------ACTTCAAGTGGGAATTTGGGCAAATTTGAACTCAGCTGGATTTTCAGTTTGTTGTTCTTTGAAGGAATTCAGGACTGTGTGCCAGCGCTGGCCACACCACCAGGAGGCCTG---GCCTGGCCCGAGAGGGATGCCAGC-TTGGCATCTCCCACAGGGCAGGGCGTGTTGGGAGCCGCTGTTGGCTGGGGGCTGGCCTGAGCCT s panTro1.chrUn_random 4116546 837 + 240967748 GC-TCAGGTCAG------------AGGGCAAA--------GATGTCCACTGAAGCGGCTCCAGAAT----------------------------CCCACAAGGA------------------------AGGTGACATCCG-----CTTC-----CTCCTCCAGCCCCACCTTC---------------------GCTTCCG-GGACC------------ACAGAGCCC----CTGGAGCCTGCACATCACGGAGTCT---------CCCACTGA----------GGAGTGAG---GAGGCCTCTTGT---------GGGGACAGATCTGGGTGAGTCAGGAGGCCCTGCAgggct-gggctgggctg----------ggctTAGGGGCTGG----AGCGGGGAGGGTTTCTCAGACTGG------------------AGTGGGAGACTTGA-----------------------------------GGTGGAGATGTGGGTTAGGTCAGGGTCAACCCTGAAAGATTGAGAATCACATGGGGCTGCTCATCTTGGGCGTGAGGAGCAAGGTCTCTGGGACTGAATAGGTGAAG--ACCAGTTTCCTGGGACG-GGCACGACAGG--GACTCG-AGCCCCGTCCTAGGCTGTGTCAGGGCAGCTGAGAAACT-TGCTGGCTTGTGGGTCATGGAGCCCCAGGAGC---------------GGTT-------GAGGTGCAGGAGGGGGCCTGGGTGGGGCTGAGTCAAGGGCTCCTGCC--AAGCCCCTGTGGCCCAGGTGGTATTTGTTTATGCCT---CGTGGCCTGGAGGAGCCACTGCCTTCACCACATCCCACCGGGGTGGGGCGG---GTACCACCCTCTGGGACAGGGAA----------CCTTCAAGTGGGAATTTGGGCAAATTTGAACTCAGCTGGATTTTCAGTTTGTTGTTCTTTGAAGGAATTCAGGACTGTGTGCCAGCGCTGGCCACACCACCAGGAGGCCTG---GCCTGGCCCGAGAGGGATGCCAGC-TTGGCATCTCCCACAGGGCAGGGCGTGTTGGGAGCCGCGGTTGGCTGGGGGCTGGCCTGAGCCT s mm5.chr11 121469642 752 + 121648857 GC-CCATGTTTA------------AGGGTGAA--------GG-GCTCATTGGTGTGGCACTAATGT----------------------------CTCATAAGGA---------------------------CCATACACT-----CTTGGTCCTTTTTTGTAATGTCACTATCTACTGACCACTACTGTTAATGACCCCCGAGGAAT------------ACAGAACTA----GTGG-GCCTACATGCCTCTGAG----------------CTGC----------TAATATAT---CAGATCCTTT------------GGGAGAGGCTTGGGTGTGTCAGGAGCCCTAACC--------ACTGGCCTG------------------------------------GGAGTTCTATGGCTGG------------------GGACTGAGCC--AA-----------------------------------GGTCCAGATATAG--------AGAGTCTTTCCAGAA-------------------GTTATT--TCCTG---GTAAGGGTCAAAGTCTTTGAG-----TTAGAAGAGG--ACCTGCCACCAGGGCTATGGCTATATGGA--GACACACAGTTTCGATGTAAGC--TGCCTGGGTATTTGAACAACTATTTTTAAGTGTGGTTCAGCAAGCCCCAGGAGCCAGGAAGCATATTCAGGCCATTTAAGGAGGGAGAGGTAGGAGCCAGAGTAGGTC--AGCTATTAGC-CCTGCT--GAGTTTTTCTTGTTCAG--------------TGTGT---CGTGGCTAAGAGGAACTG-TGGCTTCACCTTGTCCCA------TGGGGCAGGAAGTAGTATAATCTGGGACAGGGAATCTGAGATGTTCTCTATGAGGAGATGTGAAGAGATTTGGAAGCAGTTGGGT------TTTATAGATATTGGTTGGAATTCAGCACTGTGGGTGTGAGCTGGCCATACCACACAGAGGCTTG---GTTCAG---GGTAAGGATGCTAGC--AACCTCCTCATGAAGAGCAG-------------------------------TGACCTGGGTCT s canFam1.chrUn 6375397 962 + 91062872 GCGTCAGGCCAGGGGTGGCAGGGCAGGGCACACGGGGTGGGGTGGGCAGGGCTGCCGCTGCAGGGTAGAAGTTGGGGAGCCAGGCTGTGCCTCACCCCCAAGGGCGTTCTGGAATGAGCACACTGCGTGGGCGCTGCCCTGGTGACCTGGGTGCCTTCTCGGGCACCACGCCC---------------------GCCCCTG-GGGCCTGGGTCAGCCCGGCAGGGTTCACAAGCGGGGCCTGGGCGCCCCAAGGCCTGGGAGGGCCCCAGCTGCTTTCAAACATGGGCTGAGCCTGGGGTCGCCGCTCCCAACCCAGGCGGTGGACGTGAGGGCG-AGGGAGGTCCCGTAGGTCCAAGGGTGCACCGCTCCCGGAGGGGCTGAGAGGCTCTTCCCAGTCAGCAGGTGCTCTCCGCCTGGGCACCTCTTGGGTGAGCCAGGAAGGGACCTGACCCAGGCGAGGCCAGAGGAGGGGCCAGGTGTCTCCGGCGGGGGTGTGAGATCAG--AGGACCCACCCAGGC--CCCCAGAGTGGCAGGGGGTCGCTCACCTTGGGCGTGAGAAGCAAGGTCTGCAAGGGGAGCTGGGCCAGGTAGCAGACTTCCTGGGTGG-GGCGGGGTGGGGAGACCCC-AGCCCTACTGTGGGTTGTGTTGGGGCTGCTGAAAAACT-AGCCTGGCTGTGGGTCA-CGAGCCCCGGGAGGAAGGCGA--------GGCCCCTGC--AAAGGGCAGGAGGTGG---AGGTGGGATGTGGGCTggggcccgggccgggggccccACCAGCCAAGG----GTCTGTTTCTGCTTGGAGGTGGCAGGGAGAAGGGA------------CCTGCCA-------AGGGCTC-------------------CAGG--------------------GTGGGAATTTGGGCGCGTTTGGGTTCAGCTGGAATGTTAGTTTGTTGTTTTTTGATGGAATTCAGGACCGCGGGCCAGTGTCGCCC------------GGCCTGGGTGTGTGGGGGGTGCGGGCTGCCAGCGTGGGCCCCTCCCACAGGGCAG----------------------------GGCTAGTCTGAGCCC a score=7107.0 s hg17.chr17_random 2069156 81 + 2618010 GACTGCCTATGTGGAGCTGGCAAGGAGTGAAGACCCTGCTGCC-AGCACAGGGCCGAGGCTCTCCGGCTAAGGACAGGCTTA s panTro1.chrUn_random 4117383 81 + 240967748 GACTGCCTATGTGGAGCTGGCAAGGAGTGAAGACCCTGCTGCC-AGCACAGGGCCGAGGCTCTCGGGCTAAGGACAGGCTTA s mm5.chr11 121470394 66 + 121648857 G--------TGAGGATCCAG--------GATGACTTCTTTGCCTGGCTCAGGATGGATGCTCTTGTACTGATAGATGCCTAG a score=91972.0 s hg17.chr17_random 2069237 449 + 2618010 GGACAGGCCTA-GGCTCTGGGGTCCTCAGCCCCCTCCCAGCAGGG----CCCGGCCCATGCTGCCA----GACCTGGGATGTGCCCCTGGACCTCCCTACCTCGGGCCTCTGCCCACCCCAGCCTCCTCCCCCAGACCCCTCGGTCTCTGCCCCTGGAGGAAGCCGGGAGTGTTTCTTTTGGAAATGACCCCAGTTTGTGGTTGTTCTTTGTAGACACACCCCCTGCTGGGGATGAGAAGTCCCCCTGGACCTTGGTTT-GGGCGGGAAACCGGCTGTGTCCCACGTTAACCTAAATCGTCTTTTCCTCTTTACGTTCCAGAGTCATGCTTGAGGCCAGGCTCGAATCCTGCCTGCCTTTGGTGGCTCTGAGATTCAGGGCTGTCTTTTCTGAGAGCACCCAAGTGAG---GTGCCTTGGGATGCCC----CTGACTTGGAGACACAGAGGAGGCTGGGCACCCCT s panTro1.chrUn_random 4117464 449 + 240967748 GGACAGGCCTA-GGCTCTGGGGTCCTCAGCCCCCTCCCAGCAGGG----CCCGGCCCATGCTGCCA----GACCTGGGATGTGCCCCTGGACCTCCCTACCTCGGGCCTCTGCCCACCCCAGCCTCCTCCCCCAGACCCCTCGGTCTCTGCCCCTGGAGGAAGCTGGGAGTGTTTCTTTTGGAAATGACCCCAGTTTGTGGTTGTTCTTTGTAGACACACCCCCTGCTGGGGATGAGAAGTCCCCCTGGACCTTGGTTT-GGGCGAGAAACGGGCTGTGTCCCACGTTAACCTAAATCGTCTTTTCCTCTTTACATTCCAGAGTCATGCTTGAGGCCAGGCTCGAATCCTGCCTGCCTTTGGTGGCTCTGAGATTCAGGGCTGGCTTTTCTGAGAGCACCCAAGCGAG---GTGCCTTGGGATGCCC----CTGACTTGGAGACACAGAGGAGGCTGGACACCCCT s mm5.chr11 121470460 438 + 121648857 AAACAGACTCAGGGGCCTGACACCCATGTCTCTCTCCTAGCAA-------CCTCCCATTTCAGTCAGGGTGGCTTAGTTTGTGCTCC--AACCTCC---TCTAGGGACCTT------CCCAGCTCTCTTAGTCAATCCCCTCAGCCTTGGCCCCTGTAGGAAACTAGGGCCATGTCTTTTGGAAATGACCCCAGTTTGTTGTTGTTTTTGGTAGACACGCTCTCAGCTGGGGAAGAGAGGTCTCCCTAGGCCTTGGTTTGGGGTAAGACACGTGCTCTGT-CGACATTTCACCAAGTAGTATTTGTTCTTTAACTTTCAGGCTTTAAATTTGAGGCCAAGTTTGGATCCTATCTGCCTTTGGACACTCTGGGATTCAGGGCTGGCTTCTCTTAGGACACTCCAGTGAGTGAATGCCTTATGCTGTTCAGTTCTGAGGTGG-----TAGA----GCTGGACACCCTT s canFam1.chrUn 6376391 384 + 91062872 GGATCGGTGTA-GACCCTG----CCTCAG-----TCCCAGCAGGACAACCCCCCACCACCCGCCCC----CACCTGGG--GCACCGCTGGCACTCACCCCTTGGGG--------------------CTCCCCCAGAACTCCTAGCCCTTCCCCC------AGGCCGG-----TGTCTTTGGGACACGACCCCGGTTTGCTGTCATTTTTTGCAGGCTCACCCCTAGCTGGGCATGGAGGGCTGCCTTCAACCTTGGTTTGGGGCAGGAAATGGGCTGTGG-CCACGTTCACCTAAATGGTATTTTTTACTCTAAAGTT-----------------CCAGGCATGTATCCTGCCT-CCCTTGGTGGCTCTGAGACT------TGTCTCCTCTGAGAATACT-GGGCGAG---GTGGCCTGGGGTGCT-----CCAAGGTGG-GGCGGGCAGGAGGTCCGGTACCCCT a score=20249.0 s hg17.chr17_random 2069686 266 + 2618010 TTTCCCCGACGCACTGAGCCAGGTCAGCAGAGGTGCTGGGGCCTGGCATGGCCCCTGGGAAAGAACCTGCTTTCCTCTTG----------------------TGGG---------------------------AAGTCAAATCCTCGCACTC-------------------------AGTGCCG-GCACCCCTTGGC-------------------GGGTGA---CAAGAGGGC-------ATCTCGAAGGCCACTGTGCTATGG-----------------------------------------------GAGTTAC-----------------GGCTTTGACTCTGAGACGGGGGCCTGGG-------------------------TGAGGACCTGGTATCCTCAAAGTCCCCGTGGCTGCCCTGTGGAGAAGACT-----------------------------CTGTTGGGAGAGGGCGCTGC s panTro1.chrUn_random 4117913 261 + 240967748 TTTCCCCGACGCACTGAGC-----GAGCAGAGGTGCTGGGGCCTGGCATGGCCCCTGGGAAAGAACCTGCTTTCCTCTTG----------------------TGGG---------------------------AAGTCAAATCCTCGCACTC-------------------------AGTGCCG-GCACCCCTTGGC-------------------GGGTGA---CAAGAGGGC-------ATCTCGAAGGCCACTGTGCTATGG-----------------------------------------------GAGTTAC-----------------GGCTTTGACTCTGAGACGGGGGCCTGGG-------------------------TGAGGACCTGGTATCCTCAAAGTCCCCGTGGCTGCCCTGTGGAGAAGACT-----------------------------CTGTTGGGAGAGGGCGCTGG s canFam1.chrUn 6376775 476 + 91062872 -------CACTTGCTGAGACTGCTCTGCAGAGGGGTGGGCACCTGGCGTCACCAAGGGGGACGG---TGCCTTCTGCTGGGCAGGGAGGGAGGGCGAGTGGATGGGTGAGTGCCCCTCTCTGTCCCCAACCGTGGGTCACCTCTCTGGATTCCCTGCTTCCTCTCAGGGATGTGTGGGGTGCTGTGGACCCCTGGGTCATGGGGGATGTTGGGGTAGGGTGGGCCCATGGGGGTGTTGAGGGTCCCGTGGACCCCTGGGTCATGGGGGGTGTTGGGGTAGGGTGGGCCCATGGGGGGTGTTGAGGGTCCTCAGAGTTGCGGGGCCATCCGGGGTGTGGCTTTGACCCTGAG-CTGAGGCCTGGGGAGGCAGGCAGCACAGGAGATGGCATCTGGCCCAGGTGTCCACGGTGTCCCTG-GGCTTCCTCGTGGAGAATACCTCACGGGGCCACCAGGAGAGAGAGGACAACTAATGGCAGAGGGAAGGGC a score=56281.0 s hg17.chr17_random 2069952 482 + 2618010 CTCCCAGAAGTGTCCCAAGGTCCAGGAAGGAA-TGGGGGGAAGAGGACAGGAGGGTGT-------TCTCACAGTC---ACTGTGA-CCTCTGGTGAGCAGAGGGTCC-------------------------------TTCTCAAGCTACTGAATCCTCATGGGGCTT----GGGTGAGGGAGCGAGGA-------TAGGCCAGGAGCCAGAGGCTCAG---GAGGGGATGGCCTCACTGTGGAAGGTGCAGGGGTGGTCCAGCCTGAGCCCTCTGCCCCCC------------GCTGCAGCTCAGCACCCCCCCCCCACGCACACTTACCCAGGGGGTTGCAAAGTGATGGGTGTTGGCT----------------CTGGAACTAGTCCCATGTTGTTTCCCAGG-GAAGGAGCCACACCCTTCTCAGACCTCTGGGC-TGATGCACGAAACGGCAGCCCTGCCTGGGCTGCCCACCGCCCGTCACAGAACGATCCCGCTGCAA-----ATTTCACAGGCATCTGGATCGAATAACAGGCTGATAGGGCGTATAAAATTAGAGACAGAACTCT s panTro1.chrUn_random 4118174 496 + 240967748 CTCCCAGAAGTGTCCCAAGGTCCAGGAAGGAA-TGGGGGGAAGAGGACAGGAGGGTGT-------TCTCACAGTC---ACTGCGA-CCTCTGGTGAGCAGAGGGTCC-------------------------------TTCTCAAGCTACTGAATCCTCATGGGGCTT----GGGTGAGGGAGCGAGGA-------TAGGCCAGGAGCCAGAAGCTCAG---GAGGGGACGGCCTCACTGTGGAAGGTGCAGGGGTGGTCCAGCCTGAGCCCTCTGCCCCCC------------GCTGCAGCTCAGCA--CTCCCCCCACGCACACTTACCCAGGGGGTTGCAAAGTGATGGGTGTTGGCTCTGGGTGGAAAAACACCTGGAACTAGTCCCATGTTGTTTCCCAGG-GAAGGAGCCACACCCTCCTCAGACCTCTGGGC-TGATGCACGAAACGGGAGCCCTGCCTGGGCTGCCCACTGCCCGTCACAGAACGATCCCGCTTCAA-----ATTTCACAGGCATCTGGATCAAATAACAGGCTGATAGGGCATATAAAATTAGAGACAGAACTCT s mm5.chr11 121471164 447 + 121648857 CTTCCTGAAGTGCTCTAAGCT-CAGGTGGGAA-CTGGGGAGGGAG---AGGAGGATG--------ACCCAATGTC---ATGGTGC-AATCAGATGAGCCCAGGTTCC-------------------------------TCCTT-GGCAGTGGAAATTTGCAGTAACTT------GTGGTATAGTGAGGA--------AGAACAGTAGCCCCAAGCT-------GGGAGATAGCTTTAATGTGA-----GCGAGACTTGTCC--CCAAACCACTCCTTTCTCCTTCTATTGAGATGCCACAGCACAGATGTTGGCTCCAGCGTGTACT---CCCTGTAGTCCCTGAGAGC----------------------------CTGGAAT--GGTCCAGGTTGATCCCCAGG-GA------CAGACCCT--TCAGTCTTTATTCC-TGGTTCTTAAGATAGGAGCCCTTTGT-GGCCAACCACCATCCACCCCATG--TATCCAGCTGTGA----TTTTTCACAGACATCTGTATCAAATTATTGGTTCATGTCACAAACGAAATTAGGGCAGGTGCCCA s canFam1.chrUn 6377253 515 + 91062872 CTCCTGGAAGTGTTGTGAGGTCCAGGCTGGAAGCAGAGGGAACAGGAGCGCAGGGCAGCAGCACATCACACTGCAGGGACGGTGAGCTTCTGGGGGGCACGGGGCCCCGATGTGCCAACAGTCCAGGGCTGCCCCGTGTCCACCCACCGCTGAG----CACGTGGCCTCCGAGGCTGGCGGGCAGAGGGTTCTGACTGGGCCTCTGGCCCTTGGGTGAGTGAGGAGGGACAGGCCCTCCATGTAGGTTGGGAACCTGG---GGCCAGACCATTCCCACGCCC-----------------AGCCC----CCCGACCCCCACGC-----CGTCCCTGGGGCCA-GGGGCGCTGGAAATCCAC-----------------CTGGAACGAGGCCCACACTGTTTCCCAGGCGAGGGAGCCCCTCCCT----AGACCCGGCTCCGTGATTCAGGAGGCGGGAACCCTGCCCGGGCCG-CCACC-CCCGTC-CAGGATGGTCCCAGTGCAACGCGCATTTCAAAGGCATCTGGATCAAATAACTGCCTGATCGCGTGTGT-AAATCAGAGACGGAACTTT a score=-284.0 s hg17.chr17_random 2070434 33 + 2618010 C-----CAGAAGGCAGGGT---------------------------------GGAGGCTGCAGCTCCCTGG s mm5.chr11 121471611 38 + 121648857 CCCTAGCAGAAGCCAGAAG---------------------------------CCAGAAGCCAGCTACCTGG s canFam1.chrUn 6377768 66 + 91062872 -----CCGGAAGGCAGAGACATGGCGATTCATCCCAGGGTGATGCATGCAGCCGGGGCCACGGCTCCCTGA a score=818.0 s hg17.chr17_random 2070467 39 + 2618010 GATTCCACGT-------GAGAAGGCAGTGATGCTGC------------TGCCCCCACG s canFam1.chrUn 6377834 57 + 91062872 GATTTCGAGTCAGCCCAGAGAAGTC-GTGACGCTGCCCACACAGGCTCTGCCCCCGTG a score=855.0 s hg17.chr17_random 2070532 9 + 2618010 AAGACAGTG s panTro1.chrUn_random 4118856 9 + 240967748 AAGACAGTG a score=55107.0 s hg17.chr17_random 2070541 626 + 2618010 GGAAGCCCAGCCTGGA-----GGGGAACGGGGGACG----GGGTGGGGGGTGGTCCAGAA----------------------------------AAAGCAGCAGGCGG--------------TTGGGGTGGGACACAGGGACTGTCCCGCCCGGGGAGG--------CCCC----CAGACCAGGAGGG------------CCAGACCCTACC----------GCCCCTCTGCAGGACCCCATCCCTGCTTCACTCCCTTGCTCCTAGTTCTGAGTTGGGCCCAGC-------CTGAGTCTCCA-CCAGGTGGACAGTAGCTCCTCGGGGCAGCTGGGTGTGGGATCTGCAGG-CTCAGGCAGCCACCCAGATACTAGCGGCCTCCCTGCCCTCCAAAAGCCCAGCCTGGGATGAACCTTGACAAAGGCCCTAGACCACAGCAACCACCCCACCAGGG--CTCTGAGTTCTCCATGAGGACTGGTTTCCCTGGAAGGTGAACACTCAGGGGCTGGGACCCTTAAGGATTGTTCTTCTCAGGTCTTCACCGTTTCCAGACGTGTGCCTTAGACATCTGCACGGACATCTCTTCCCAGGGATGGGCGTCTCAGGGCAGGTGCATTTAAACTTGTGATAGAGACTCCAAATCACCTCTCAAAAGCCTGTTCCCATTCACACCCCTGCATACGGCATGTCAGTGGATCCCTTCCTCACTGGAGCAACACTAGA s panTro1.chrUn_random 4118865 618 + 240967748 GGAAGCCCAGCCTGGA-----GGGGAACGGGGGACG----GGG------GTG-TCCAGAA----------------------------------AAAGCAGCAGGAGG--------------TTGGGGTGGGACACAGGGAGTGTGCTGCCCGGGTAGGT-------CCCC----CAGACCAGGAGGG------------CCAGACCCTACC----------GCCCCTCCGCAGGACCCCATCCCTGCTTCACTCCCTTACTCCTAGTTTTGAGTTGGGCCCAGC-------CTGAGTCTCCA-CCAGGTGGACAGTAGCTCCTCGGGGCAGCTGGGTGTGAGATCTGCAGG-CTCAGGCAGCCACCCAGATACTAGCGGCCTCCCTGCCCTCCAA--GCCCAGCCTGGGGTGAACCTTGACAAAGGCCCTAGACCCCAGCAACCACCCCACCAGGG--CTCTGAGTTCTCCATGAGGACTGGTTTCCCTGGAAGGTGAACACTCAGGGGCTGGGTCCCTGAAGGATTGTTCTTCTCAGGTCTTCACTGTTTCCAGACGTGTGCCTTAGACATCCGCACGGACATCTCTTCCCAGGGATGGGGGTCTCAGGGCAGGTGCATTTAAACTTGTGATAGAGACTCCAAATCACCTCTCAAAAGCCTGTTCCCATTCACACCCCTGCATACAGCATGTCGGTGGATCCCTTCCTCACTGGAGCAACACTAGA s canFam1.chrUn 6378053 581 + 91062872 GGGAGCCCGGGCTGGGGCAGTGAGGAAAGGGCAGCGCCCCGGG------AAGGTCCAGGATATCAGGGACGGTGACACACCGCGGCCTGACACGGAGGCAGCATGGGGCCCATCATGAAGAACTGGAATGGGA-GCCGGGCCTGGAGGGGCCGGGTGGGGTGGGGGACCCTGGAACAAAACAGGAAGGGGTGGGGGTACCCCAGGGCTTGCCCTGAGATGGGGTGCCCCAGAGGGACAC-----------CACTCCCCAGAGCAGGG----AGGTCAGGTCCTGCTGCCCGGCTGCGTCTCCAGGCAGGGGTGCAGCTAAGCCACGGCCCGGCCAGGC-----CTCCGCAGGCCCCAGGGTGGCA---GGATATGGA---------------------GCCCAGGCAGGGATGCCTCCC-------TCCCGGGACCCCCCCCCCCACCACAACGGGGACCTCCAGGCTGTCGGCGCGGA-----GTTCCCAGAGGCCGGAAGCTCAGG----GTGCCCCCAAGGGGCTG---TGCTCAGGGCTTCGCCG------------------------------GGGC------------------GAGTTTCAGTGCAGACGC--TTAAA--TGTGGCAGAGGCTCCAAATCA-----------CTGGTTCGTG-------CCCTGCACATGGTTTGT-------GCTCTTCCTCACCGAATGGATCCTGGA a score=135120.0 s hg17.chr17_random 2071167 655 + 2618010 TTTAGTCATAAAATATTTTTCAATTTCTTATTTCTATGATTAATAGGGAGGTTGGATATTTTGTGATATTCATTAGTTTATTTGACTATGTTtctg--tttttaccctttaccacttttctagctagtcatttgcttttttcttgttgatttgtgggagttctttatatatgatgaatatcagtactttgtgtttacattgcagatattcgttcccagtctgctgcttattattttacctttttaaggttgt--tcttttcatcacataaaag-----tttttaaa-----ttttaagtagtcaaa--------tGGTTTCCTTTAAGGCTTTGGATTTTGCATTTT----------------TATACCAAAATGCTCTTGTA----TTTTCTTCCAAA--CtttataattattctttttttttttttttttttGCCTTTAAGTTCATTTTGGGGCATGGGGTGAGACAGAATAGCACCA-TTTTTCCACATT-AAATCTTAGATATTGTGAGCCCTGGAGGACACAAATtacagcttagaggcctggagcat-gattctggagccaggcttcctgggccggagtccacgtcctgcccatggtggctggc----cattgctttggggagcctctctgagcctcagtgtcc----tctttgaaagagtggttgttcagagtaAGAGGGTATCTTCCTGTGGAC---------GACTCAGC s panTro1.chrUn_random 4119483 650 + 240967748 TTTTGTCATAAAATATtttt-aatttcttatttctatgattaatagggaggttggatattttgtgatattcattagtttatttgactatgtttctg--tttttaccctttaccacttttctagctagtcatttgcttttttcttgttgatttgtgggagttctttatatatgatgaatatcagtactttgtgtttacattgcagatattcgttcccagtctgctgcttattattttacctttttaaggttgt--tcttttcatcacataaaag-----tttttaaa-----ttttaagtagtcaaa--------tGGTTTCCTTTAAGGCTTTGGATTTTGCATTTT----------------TATACCAAAATGCTCTTGTA----TTTTCTTCCAAA--Ctttataattattcttttttttttttttt----GCCTTTAAGTTCATTTTGGGGCATGGGGTGAGACAGAATAGCACCA-TTTTTCCACATT-AAATCTTAGATATTGTGAGCCCTGGAGGACAAAAATtacagcttagaggcctggagcat-gattctggagccaggcttcctgggccggagtccatgtcctgcccatggtggctggc----cactgctttggggagcctctctgagcctcggtgtcc----tcTTTGAAAGAGTGGTTGTTCAGAGTAAGAGGGTATCTTCCTGTGGAC---------GACTCAGC s mm5.chr11 121473557 647 + 121648857 TTTTGTCCTTAAATGTTTTTCAAGTT----TTGTTATGTTGAATAGGGAAGTCTTATATTTTTTCCTATCCATT-----------CTAATGTCCTGCATGTTTATCCTTCACTGTTTCTGTCGGGAGTC---TGCTTCTTTC-TGTTGATCTGTGGTAGCTCTCTGTGTACAATGAGTATCAAGACTTTGTGTTTACATTGCTGATG-------------------TTGCCAATTTACCTTTCTAATGGTGCTATTTTTTCCCCACACAAAAGTACTTTTTTTAAAAAAATTTTTATAAAGCCAAATTAGTCAGTTGTTTCCTAT-AGGCTTTGGAATTTGCCTCTTGCCTGCTCTCCTG--AGAGGGCAAAGACTTCATTTAGTGTTTTTCTTCCAAAACTTTTATAATTATGCTTTTTGTCCCTAATC---------TAAGTTTATTTTGGGGTATGGGGTGAGACAGAGTGGAACCATTTTTTCCACATT-AAACCTTAGCTATCTTGAGCCCTGGAGGACACAAATTATAGCCTAGAGGGCTGGA-----GAGACTGGGGCCA-ACTTCCTGGGCTGGAGTCCA--GCCTG--CATTAAGGCTGGG----TGCTGGCTGGTGG-------CTGAGCCTCTAGTTCCTTCTTCTCCAAGAACATGGTTGTACCGAAGAAAACAATACCCTCTGGTGAACCCTTCCGGTGTCTCAGC s canFam1.chrUn 6378634 669 + 91062872 ---TCTTGCGAAACATCTTCCAACTTCTCCTTTCTGTGATTAGT--GGAGATTGAATAATTCTCTGCGTCCATGGAGATGTT---TTACGTCTTTC--TCGTTCtcctttgccacttttctgttgagctgt-tggtttctccttactgacttgcaggtgctctttacatgtgataaacgccagcac-tcgcgcttac-ttgcaggggcttgtgcctggttcctcgctggacatttt-cgctcctccggctgc--tcgatccgtcccacagaag-----tcctcgg------ctttccgtagtcccatctgtccgttgttt-ctgtgacgc-ttagattctgcatcgggtcccttttcctgacagcgtgcacttttcccttgta----tccccttccagttcttttataattatactttttgcctttaatc-----tatgtgagttgatttt-gggtatggggtgagacagagtggaacca-cttctccacatTAAAATCTGAGATATCAGGAGCCCTGGAGGACACAAATtatagcgttcgggcttggagcacaggccctggagccgggcttcctgggctggaatccatgcccggccccccatggcgggcatgtcggccatgtgctgagcctgctccagcctcagtttct-tcttcCCCCAAAGGATTCTTGTGCAGATCGAACAAGCACCTTTGTGTAAGC---------CACTCGGG a score=0.0 s hg17.chr17_random 2071822 16 + 2618010 TTGCGTCTCAGCCCAC a score=169.0 s hg17.chr17_random 2071822 6 + 2618010 TTGCGT s panTro1.chrUn_random 4120133 6 + 240967748 TCGCTT s mm5.chr11 121474204 6 + 121648857 TTTGGT a score=973.0 s hg17.chr17_random 2071828 10 + 2618010 CTCAGCCCAC s panTro1.chrUn_random 4120139 10 + 240967748 CTCAGCCCAC a score=21163.0 s hg17.chr17_random 2071838 138 + 2618010 AGTGAGCGAAGAACCAGGGGGTCTCACAGAGCCCTGACTCAGGCGCTGAGGGTCCCCCTAACCTCCAGGCAATTCGGCCTGCACCCCCACCCCCGCTTCTTCTTGCCTCTTCTAGAAGAGAGGAG---GGTGGCGGTAAGG s panTro1.chrUn_random 4120149 138 + 240967748 AGTGAGTGAAGAACCAGGGGGTCTCACAGAGCCCTGACTCAGGCCCTGAGGGTCCCCCTAACCTCCAGGCAATTCGGCCTGCACCCCCACCCCCGCTTCTTCTTGCCTCTTCTAGAAGAGAGGAG---GGTGGCGGTAAGG s canFam1.chrUn 6379303 127 + 91062872 AGTGAGT-------CCGGTGGTCTGACTGAGCCC-AAATCGGGCCCTGGGG--CCTCCCAGCCTCCAAGCCGTT---CCCAGACCCTGGGCCTCACCTCTTCCTGCTTCTTCCAGAAGAGTGGGGACAGGTGG-GGCAGGG a score=55439.0 s hg17.chr17_random 2071976 834 + 2618010 CTGGAAGGGGGAAGA-------------------------------AAATCTGTTTCCCAAAGCCTCCAGGTGATTCA----------------------GCCAGAGTGAGACC----AAATG-------------GCTTG-------------------------------GGTCTTGGG--------------TTTTCAGCTTCCTCACCTGTGCGGTGCAGGTGACAGCA------------CCCCA----------CTTCCTA--------------------CTCTGTGGGCAGGTAACACCTGCGTGCTCTGAGAAGGGGAAAACATCTCCACCCTCCCCAGAGGCCTGCACGGCCGGAGGTCACAGTGAGGCGGCCACACGCCCCGGGCTCTT-GCTCCGAGG---GGACGCTGTCC------------CAACAAGAGGCCCCCTCACAGTCTGTCCT-------GACCCTGGCTCTGTGGCCCCTCCTT--CTCCTTGAT-----CAGGCCCCTCCCGGGTCTACCGGGATCTCTGGCTGCCCCCCGACCCCCTGCTGCAGCCCCAACCCTAGGTCTCCACAAAGACTTCGGGATGC-CCCGTGAGCCCCTGGGTCCT------GGACCCCTCTTCCTCCTCCAGCCCCTCCTCTCCCAGCTGCTCCTGGCTGCCCTT----TAATTGCTCAGAGCTGTTCAGCAACCTGGCGC--GTAGCTGG------------------------------------------------------TACATAAGTGGCTGTTGGTTGGAGTC-AAGTGAGTGATGGGGAGATGCTAAGAAGAGTGAAAGAAGCCT---CGGCACCCGCCGGGAGCAGGTGCTGGGGGTGTGAGTGCCGCTGAATGAACGCGTCCTGGGACGGGATCCTGAAGCCCACCCTCCCGCCGGGCCCCCACAACCCAGAGCGCACACCAA-ACTTTCT------ACGTGTCTTTCCCGGTCAGCCTGAGCCCAAA---CCACCCATG--------TCCCTGAGCTTGTCCTTGTCTGAAAGAGGAGGGAAGTGTCTGTGTCCTCAGGAGCCCCTGGCCTTAAAGA s panTro1.chrUn_random 4120287 827 + 240967748 CTGGAAGGGGGAAGA-------------------------------AAATCTGTTTCCCAAAGCCTCCAGGTGATTCA----------------------GCCAGAGTGAGACC----AAATG-------------GCTTG-------------------------------GGT---------------------TTTCAGCTTCCTCACCTGTGCGGTGCAGGTGAAAGCA------------CCCCA----------CTTCCTA--------------------CTCTGTGGGCAGGTAACACCTGCGTGCTCTGAGAAGGGGAAAACATCTCCACCCTCCCCAGAGGCCTGCATGGCCGGAGGTCACAGTGAGGCGGCCACACGCCCCGGGCTCTT-GCTCCGAGG---GGACGCTATCC------------CAACAAGAGGCCCCCTCACAGTCTGTCCT-------GACCCTGGCTCTGTGGCCCCTCCTT--CTCCTTGAT-----CAGGCCCCTCCCAGGTCTACCGGGATCTCTGGCTGCCCCCCGACCCCCTGCTGCAGCCCCAACCCTAGGTCTCCACAAAGACTTCGGGATGC-CCCGTGAGCCCCTGGGTCCT------GGACCCCTCTTCCTCCTCCAGCCCCTCCTCTCCCAGCTGCTCCTGGCTGCCCTT----TAACTGCTCAGAGCTGTTCAGCAACCTGGCGC--GTAGCTGG------------------------------------------------------TACATAAGTGGTTGTTGGTTGGAGTC-AAGAAAGTGATGGGGAGATGCTAAGAAAAGTGAAAGAAGCCT---CAGCACCTGCCGGGAGCAGGTGCTGGGGGTGTGAGTGCCGCTGAATGAACGCGTCCTGGGACGGGATCCTGAAGCCCACCCCCCTGCCGGGCCCCCACAACCCAGAGCGCACACCAA-ACTTTGT------ACGTGTCTTTCCCGGTCAGCCTGAGCCCAAA---CCACCCATG--------TCCCTGAGCTTGTCCTTGTCTGAAAGAGGAGGGAAGTGTCTGTGTCCTCAGGAGCCCCTGGCCTTAAGGA s mm5.chr11 121474390 787 + 121648857 CTGGGATAGAGATAA-------------------------------ACCTCAGGCTGCCAAGGGTTTTAAGAGACTCA---------------GACTCTGGCCAGCCTGGGGCTTCTAAGATGGAAAC--TACCATGCTTG------------CTGGGGGGCTCTAGGAGCAGGTTTGGAGATGTGTAGCCCAGTGTCTCAGCTTTCTCATTTGCTAAGCAGAGTCCACAATG------------CTC------------CTTGTTA--------------------TTCTAT-AATATATAACACC-----ACCCAGATGAGGATGAAA---CTGTGTTTACTCCACAGGCCT-------------TTCTAGTCCTGTGACTAC---CACTGGGCTCTG-GAGGCACAT---GATGGTCTTCCTTGCTGGCTAGGCATTGAGGGACACCCTTCTAGACTCTCCTCTAGTTGGACTGCTGCTCTGTAGCACTTTTTC--TTGCT--------------CTCATTCAGGCCTATCGGG----------GCTGCCTGA--ACTTGCACAATCCCAAACTC---GACTTTACAAAG-CTTTAGGAGGCATCTTTGAGCCTCTGGGTC-----------TCCTTAGTCCTCTTCC------------CCTAGCTTGTTGTAGCTGTCTGC----TAATTGTTCAAAG------------------------GCTGG---------------------------------------------------------GTAGGCAGCCTCCTGCTGAGAGC-ATGC-----ATGGAGA-----CCAGAGAAGAGAAGGGAGTCTGTCTGGAGCTGGCTTAGAGTTGGTGTTAAGAGGACAGGCACCACTGATCAGGTCAG---TGGGACAG--TCCTGATGCTC---------CCAGGCCACTGCTACCCAGGGCACTGACAGACAATCTCT------ACAAGTCCCCCAGGCTTGACTTGGACCTGGATGTTCATGCAGG----------CCTGAGTGCACATTTGTTTGAAAGGGAGA---------TGTGCCCTCAAGATATTCAGGCCTCAAGGA s canFam1.chrUn 6379430 995 + 91062872 CCGAGGAGGGAAGGAGGTGGGCCACCTCCAGGTGAGTGACATCAACACCTGAGCGCCCCAATGACTTCGGGAGAGCCGTCCGCACTGCCGGAGGCTTCTGGGGAGAGAACGGTC----ACATTGGGGTCGTGCCCAGCCTGGCCTCTGCAAGCCGGGACGGCTCCTGG----GATCTGGAAGTG-----------GATGTAGGTCCTGCTTCTGCACGGAGCCGGGGGCAGAAACGGGGCTGCAGCCCCAGAGGCACAGGCTCCTCACCTGTGAAAGCAGGTAGCGGCCCTGTGCGCAGGTGGCACAGGTGTGCAC-GAGAGGGGGG------CCCCACCCACC-----GGCTGGCAT-----------------CGGTCACCGCGGCCCCCGGGAGCTGAGCTCCGGGGGCTGGAGCACAACC------------TGACCCTGGCCTCCCTTGGGGTCCGGCTC---------------CTGCGGGACACCTTCCTGACCCCTGGCTGGGCCCAGGCCCCTTTCGGCTGCTCCGGG-------GCTGACCTCTGTGACCC-----CAACCCCGACCCCCACGTCCTGCAT---CCTCCTGTTTT-CCTGCTGGGCACCGGCTCCCGGGAGAGGACCAGCCACCTTCCTCTTGTTCCTCTTC-CCCTGCTGC-CCCGGCTGCCCGCCGCGTCCCTGCCCAGCGCTGCCCAGCCGCCCGCCGCTTGCTGCTGGAGGACCAGAAGGGGGCCTGAGCCAAGAAAGTGGTTAAAAAAAAAAGGAAAGAAAAGAAAAAGTGGTTGTTAATTTGTGCCAAAGTGAGTTA-GGGGAGGGGCTAAGGATAGTGAGACGTG------GGGTCCCGACTGCGAGTGAGAGCTGAGGCTGTGTGGGTCGTGGG--------GACCGAGGGAGGGTCCTCGCAGGCCACC--GCTGCCCGGAGCACACCAGGCGGGGGGCTGCCCAG-GGGCTGCAGGAGGACGGAGCTGACGCGGGGGCCACAGACCCGGA---CCACGAGTGGGAGCCCTTCCCGCAGCCTCTCCTCGTCTGCAAGGGGAG-GGGGAGCTGGGGTCCGGAGGAGACCCTCACCCCAAGGA a score=12304.0 s hg17.chr17_random 2072810 106 + 2618010 TAGGCACCCTGGCTCTGGCAGGCAGGTGGCCCCTGGCAGCCTCGCC-CACGCCCGCGGTGACTAGCTCTCGGGCAAGCGATGCAAGTGCAGAAACCAGCTCTGTGTG s panTro1.chrUn_random 4121114 106 + 240967748 TAGGCACCCTGGCTCTGGCAGGCAGGTGGCCCCTGGCAGCCCCGCC-CACGCCCGCGGTGACTAGCTCTCGGGCAAGCGATGCAAGTGCAGAAACCAGCTCTGTGTG s canFam1.chrUn 6380425 94 + 91062872 --------CGGACGCT-----ACAGGTGGCCCTTGGTCCCTCGGCCGCCCGGCAGCCCTGCCGTCCCCACGACCAGGCGTTCCCCGCGCGGAAACCCGCTGGGCGCC a score=106786.0 s hg17.chr17_random 2072916 737 + 2618010 GTCAGTGCCCCGGAGCTGCAGCGGCAGCAGAGGTCGGAACACCTTCCTCTGTGGGCACGCCACGGAAA---TTTAAAGACACAGGGTGCTCTTTCGCAAACCGGGCTCGTTGATTCTACAGGAGAAGGTAACTATTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTT---------CGGAGGGT-------GCTCTG---TGGCGATTAATATTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAAAACTGACTAAAGGAGAAGTTGGTGTCTTCCTCATACAAGAAATACATAAATCAGTTAAAAATAGTTCTCCGAGCGGATATGATGATGTCGTGGCCGTCACAGGAAACACATGAATCAGCCTCATCCTCAGTTCCAGGGAAGTGGGG-ACAGTCGGTGGTCCTTGGACCCCTCTTGGGGCGCGTGGGTGAGGCAGGGTCCCTCTGGCTTTACCTCATACCCGGACTGGCAAAGCTGCCTGGGAGGACAACTAAAACCATGCTCCTTTGATTCTGTGGACATTGCTAATTGCTGGGCGTTCATTTCTTGAATTCAGACCTTCTCATGAACCAGAGGAGCTGGCTCAGAAAAATGCCGGTGACGCATGGGCCTGAACTGGTCAGTGCAGCTCAGAGATGCTCGCCGTGGGGGAC-GTGCAGTT-----TGCCTGTGGGCCAGTTGTCCACCCGTCAC--CGTTACCCCGCTGAG s panTro1.chrUn_random 4121220 737 + 240967748 GTCAGTGCCCCGGAGCTGCAGCGGCAGCAGAGGTCGGAACGCCTTCCTCTGTGGGCACGCCACGGAAA---TTTAAAGACACAGTGTGCTCTTTCGCAAACCGGGCTTGTTGATTCTACAGGAGAAGGTAACTATTATTGAGTTTCTTCTTTTTCAGAATGAGTGGCATCCAAACCTGACTCATATTTCCAACTTTATTAATTTTTGCAAGACTT---------CGGAGGGT-------GCTCTG---TGGCGATTAATAGTGCTGAGCTGAGCACAGCTGCAATACTTTCCTGTAACACTGACTAAAGGAGAAGTTGGTGTCTTCCTCATACAAGAAATACATAAATCAGTTAAAAATAGTTCTCCGAGCGGATATGATGATGTCGTGGCCGTCACAGGAAACACATGAATCAGCCTCATCCTCAGTTCCAGGGAAGTGGGG-ACAGTCGGTGGTCCTTGGACCCCTCTTGGGGCGCGTGGGTGAGGCAGGGTCCCTCTGGCTTTACCTCATACCCGGACTGGCAAAGCTGCCCAGGAGGACAACTAAAACCATGCTCCTTTGATTCTGTGGACATTGCTAATTGCTGGGCGTTCATTTCTTGAATTCAGACCTTCTCATGAACCAGAGGAGCTGGCTCAGAAAAATGCCGGTGACGCATGGGCCTGAACTGGTCAGTGCAGCTCAGAGATGCTCGCTGTGGGGGAC-GTGCAGTT-----TGCCTGTGGGCCAGTTGTCCACCCGTCAC--TGTTACCCCGCTGAG s mm5.chr11 121475257 621 + 121648857 GTTAGTG---------GGTAGAGCCAGTATCCATCCATAAACTCTCTTCCATGG---CATCTCTGAAAGGTTTTAAAGAAACAGTGCATTCTCTCTCAAGATGGATGTGTTTATTAATCAGAAAGACCTGAC---AACTGAGTTTC--CTTTTTCAAAATGAGTGGCCTGCAAGCCTGACTCACACTTCTAAGTTCA-TAAATTTTGCATGATTT---------TTGAAGGCCCGACTGGCTCCATCCTGGTG-TCAATACTGCTGACATGAACACA-TTGCAGAA--GTCTTGCAGAAATG-----------AGCTGATACCTTCCTCATATAAGAAATACATAAGTCAGTTAAAAATAGTCCTCAGAACGGATGTGATGTTGCTGCGGCTGTCACGGGAAACACATGAATCAGTC------------ACAGGAAGATGTGG-ACAGTCCATGGGTTTGGGGCTCTTTCTTGGCTGTTTGG--------AAGTTCTTC--ACCTTACCTTATACCCTG------------GCCCAAGGAAGCACCTAACATTGTG-------GCTTCCAT--ACCTT-TTGAAGGCTGG--GGTTGCTTCCTGGATTCAGACT--------AACCA---GAGCTGGTCTGGGAAGAGGGGGGC-ACATATGTGTGTG-------------------TGGATACTCCAC------AGC-CTTCAAGC-----TTCCTCTGGGCCCATGCTCCCCC----------TTACCT-----GG s canFam1.chrUn 6380519 631 + 91062872 GTCAGGGCTGGGAGGCGGCCGGG-----------------------------AGGCGCG------------------------------------------TGGGCTTGTGGGGCCCACGGGGGAGGGAA-----TGGTGAGCGTCCCTCTCCGCGGAATGAGTGGCGGCC-AGCCTGCCCGACATTTCCGACTTTATTACTCTCTG-AGGCCGTGTTGCCCAGCCGGGCGCCCCCGCCGCTGTG---CGGGG-CGAGTCCTGCTGAGCTGAGAGCGGTTGCAACACTTCCCTGTAG-ATGGATGAAAACAGAACTCGGTGCCTTCCTCGGACACGAAACACATAAGTCAGTTAAAAATAGTTCCCCGAGCGGATGTGATGATACGGTGGCTGTCGCAGGAAGCACGTGAGTCAGGCTCATCGCCACTGGCAGGGCCGTGGGGCAGAGTCCTGGGCCTCTGGGCGCCTCCCCGGGGGACTCGGAGG----AGGTCCCTGCGCGTCCACCGGGCACCGGGCTAGGCCGGGGCCGTCAGAGGGATGGCTAAGCCA--------------------GCATTGGTTGTTGCCGGCTCTTTATTTCCTGG-CTCAGACCCCCT----GCCTAGCACAGGGGCCCCAAAGACACGC-----GTGCAAGGCCTCG-----------CCGGCCCAGGGCCGCTCTTCCCTGGGGACAGCGCAGCTGGCGGTGTCCGTGGAGCCGT---------GTCACTGTGCCGCTCCGCCGGG a score=131107.0 s hg17.chr17_random 2073653 1145 + 2618010 GAAGCTGTGGGTGCCACCCAGAG---AGCTTGGGTACAACACGGTCTCTGCTTTACTCATAAAAAGCCAAGACCTATGTGGTCATGGAGCGTTAAAACAGAAATTTCACACCACGCCGTACGGTCCCCGAGGCCAGGGTGTTGGCACATTTCACATC-----CAGGAGGTGCCGTCGCTGTCACTGGCTCAGCAAAGCCAGTGCCGAAGCCACTGCAACTGCCTGAGGCCCAGCGGTGGCTGGGAGCCAATTGGTGTCACTCGGTTACCACAGGGAAGGAGACGTGGCTGTAGAGGCTTGTCGCAGGTCACAGAGAAGGGACTTTTGGGCTCCAGGCCTAGTGGGTTCGAGTC---------AGCACG--GTGTCTTCCCCGACACCAAACCCAAGGACCCTCAGCACTTCCTGACCTCAGGTTTCTATTTCTAGGGTGGGGAGTAGAGGTGAA-GGGAAGCAAAGTCAG--AGTTGAATATAAAGCTCCAGAAAAACTCAGCTCAGAATTGACTAGAGGGTTGAGAGCCTGAGATCCCTAAGGGGACATGTCAACCCAGGGCAGCCGCTGAGGGAGATTGACATGGTTTCCATGGTCCTTCCACTGGGCTGGGGCCCTCCCTGGGGA--GTCTGTGCTGGGCTGGACCTTCTTCCCTG-CCAGTGGCCTCTCCTGGCTGG------------GTGGGGAGCTCCGGGGGAGCAGACGGCAAGAGTCTTGTTTGGAAACATGCCCTTCCCAGGAAATCCCCAAAACAAAACC----TGAGAAGATCTCCTGGAAGCTCAAAAGCAATTTTCTTTTCATATGTCGGGCCAATAAGAGTTAATTTCACCCAG----------------------------------TTTCTATATTTTCATGGGTCCTTAGAAGCTTTCTGACCCTGTGCCC----TGAGACTTAGGGTCTGATGGCTGAAGGAACCTTGGTCCCAGGTCCCTCTCCTGTGGAGGGGCCGTCAGAGGGAGAGAAGAGCTCGCCCTGGTTCACTTGGCCTGTCCTGAAAGAGAACCAGGAGGGAGAGCAGCCTAGCATGGG--TGCACACAAGCATATGTACAAACATGTGCTAGGGCAactcacacacgtccacatgcatgcacatacac--acatgcccacacccatgcacacttatgtgtgcacacagattcagactgtacctgtacacttccacact----tccacatgca s panTro1.chrUn_random 4121957 1148 + 240967748 GAAGCTGTGGGTGCCACCCAGAG---AGCTTGGGTACAACACGGTCTCTGCTTTACTCATAAAAAGCCGAGACCTATGTGGTCATGGAGCGTTCAAACAGAAATTTCACACCACGCCGTACGGTCACCGAGGCCAGGGTGTTGGCACATTTCACACC-----CAGGAGGTGCCGTCGCTGTCACTGGCTCAGCAAAGCCAGTGCCGAAGCCACTGCAACTGCCTGAGGCCCAGCGGTGGCTGGGAGCCAATTGGTGTCACTCGGTTACCACAGGGAAGGAGACGTGGCTGTAGAGGCTTGTCGCAGGTCACAGAGAAGGGACTTTTGGGCTCCAGGCCTAGTGGGTGCGAGTC---------AGCACGGTGTGTCTTCCCCGACACCAAACCCAAGGACCCTCAGCACTTCCTGACCTCAGGTTTCTATTTCTAGGGTGGGGAGTAGAGGTGAA-GGGGAGTAAAGTCAG--AGTTGAATATAAAGCTCCAGAAAAACTCAGCTCAGAATTGACTAGAGGGTTGAGAGCCTGAGATCCCTAAGGGGACATGTCAACCCAGGGCAGCCGCTGAGGGAGACTGACATGGTTTCCATGGTCCTTCCACTGGGCTGGGGCCCTCCCTGGGGA--GTCTGTGCTGGGCTGGACCTTCTTCCCTGCCCAGTGGCCTCTCCTGGCTGG------------AAGGGGAGCTCCGGGGGAGCAGAAGGCAAGAGTCTTGTTTGGAAACACGCCCTTCCCAGGAAATCCCCAAAACAAAACC----TGAGAAGATCTCCTGGAAGCTCAAAAGCAATTTTCTTTTCATATGTCGGGCCAATAGGAGTTAATTTCACCCAG----------------------------------TTTCTATATTTTCATGGGTCCTTAGAAGCTTTCTGACCCTGTGCCC----TGAGACTTAGGGTCTGATGGCTGAAGGAACCTTGGTCCCAAGTCCCTCTCCTGTGGAGGGGCCGTCAGAGGGAGAGAAGAGCTCGTCCTGGTTCACTTGGCCTGTCCTGAAAGAGAACCAGGAGGGAGAGCAGCCTAGCATGGG--TGCACACAAGCATATGTACAAACATGTGCTAGGGCAactcacacacgtccacatgcatgcacatacac--acatgcccacacccatgcacacttgtgtgtgcacacagattcagactgtacctgtacacttacacact----tccacatgca s mm5.chr11 121475878 1032 + 121648857 GAAGTTGTGGGTATCATGTACAGCATGGCCAATCTATGGTCTGGCTTCTGTTTAACTTCTGAAGAAGCAAAGCCTGTGTGGTC-------------ACCGATGTTTCACAATGTCCTATACAGTCACC----CAAGGCTGCTGGCACATTTTCTGACTGTGTCAGAAGCTTGCTTGGTTTGTATTAGCTTAGGAAAATGGGTGCTGAGACC----------TTAGAAGCTCAG----------------------ACTACTAGGTTACCATA--------------------------TGT------TCAGAGGAAAGTGAGCTTGTGGCT-----TCTACTGGGTTTGGGTTCTGTGGGCAGAGACG--GCTCATTCATCTACCTGAAGCCTGAGGGCCCTTAGAACTCTCTGACTTCAGGTTTCCATTGCTAGGATGGGGTGGAAGGGTCAGCAAAGAGCCCAGACAGCCAGTTTGCTAGAAAACT-------AGCTTGACTGTGAGGTG-TTAGAAAAACGGCAG--TGATGTCCCTAAGAGGACATGCAGAACTA--CCAGCCGCTG----------------------------CTGCGGTAGGCTGGGG------CTGGAGATTGCTCACCCTGGACTGACCCTTCTTTCCTG--------GTTCTTTCGGCTGGATAAGTGCTGATGTGAAGAGTTC-------GTAAACTGGAGGGGCT---TCTAGGAATGCATACTTTATAGTGAATCCCCCAAACAAAATCTTGGTGTGATAAT------AGAGATCAAAATCAATGTTCTTTT-ATATTTTGAGCCAGTGGAAGTTATTTTTCTCTAGGTTCAATTTTTTATTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGATTCCTAGAAGCTCATGGACTCTGTGCCCTGAGTGAGCTTTAGATTCTGATTGTCAGAAGAACCAAGGCTTCAGACCCTCTGCTTGGCTGGTATTTTTCAGAAGAAGGATTG--------CTTGCTTACCTGG----------------ACCAGGAG-----------CACCATGAGCCTGCCCCCAGGTACACATGCATTCATTTACTCATATAGCCTCTATACATGCACACCCATGCATATACACCTGTATGTGCATGCTCAGACAGGACTGT-----CCCATACATTT-GACTATACACGAGCCCATCCATGCTCATGTCCACATACA a score=2492.0 s hg17.chr17_random 2074798 26 + 2618010 tgcacatacacacatgcccacaccca s panTro1.chrUn_random 4123105 26 + 240967748 tgcacatacacacatgcccacaccca a score=30700.0 s hg17.chr17_random 2074824 331 + 2618010 tgcacacttgtgtgtgcacacacaGATTCAGACTGTACCTGTACACTTACTTCcacatgcatgcacatacatgtccacgcccatgcacacttgtatgtgcttgcacagattcacacgtgtacatgcacacacacattagcatgtccttgcatatgc-acacatacacacatctgacttcacattacatacacacatgtacatgcacatacatgacacacaTGGCTCGAACTGGAGGGGAGGGTCCCAGTTGCTCCCCTCGCCTGACCATCTAGTAAGTGTTGTGCCCCATGCTGCCCCATCCTGGGCTCCTGGCCAGGCTCTAAGATTAACT s panTro1.chrUn_random 4123308 332 + 240967748 tgcacacttgtgtgtgcacacacagattcagactgtacctgtacacttacttccacatgcatgcacatacatgtccatgcccacgcacacttgtatgtgcttgcacagattcacacgtgtacatgcacacacacattagcatgtcctagcatatgccacacatacacacatctgacttcacattacatacacacatgtacatgcacatacatgacacacatGGCTCGAACTGGAGGGGAGGGTCCCAGTTGCTCCCCTCGCCTGACCATCTAGTAAGTGTTGTGCCCCATGCTGCCCCATCCTGGGCTCCTGGCCAGGCTCTAAGATTAACT a score=103900.0 s hg17.chr17_random 2075155 970 + 2618010 AGAGAGGCTCTGTCC-CTAAGAAAGGTCACGCACTTCAGGGTAGGTAAGGTGGACAGGCAAGGCCTGG-TGACCTCGGCCC-------------ATCCTTGTG-CCTCCAGAAGCCGTAACTCACCTCAAAG-AGGTTTTCCTGCTGGAGGGAACTATCTCTGAGCAACAGGGGCAGACTTCACAGCTCAGGCGCCCTCCTGAAGGTAAGAGGCACTGGGCTCGCCTATCAAAGACACTCTCCTGTCCCCGCAGGTTCCCCTATGTCCCATCAGGGAGCTGGGCTCCAAAGTCTCCCGCCCTGCTTCTCCTAGAGAATGCAAAGGCTGCCTCTCTTCCCTCCCAGTGTAACCTGACCCTCCTCTGTGCCCCTTGGCCACCCTTGCATCCTCTAGCTCCTTCTGACACCTTCTTTTTGACTGTTCACAGAGGGCAG-GATCTGAAGCC-----------TGCAGAG-----GTGACCCTT---GGTGCCTTGTGCAAGGC-----------------TGGCCAGCAAGTAAGC-ATGACTTTTGGCTCTGCTGCCAGCTGGGCCATTTGATCTACACACA------CTTTTCTGCCTCTACCTGGAGTTAGGCGA-GGCTCTCTATAGAATGGGTACTTGTCAACAAAGTGGGCTTAGACTCCGGGCAGTAGCAGTT-------------------GAGGCAGGAGCAGTGGGAGAAGTCTGGGCTAATGGCAAGCACCCAGTCCCCTCTGTGAGCTGCCCACTTGTCCCAGGCTCTGCCATGGCCCTTCCTCTGATTTTTAGGAGCTTTCATGAGGCCTCGCACAGCCT-GAAGGAGCAGAGCTTGTTGTGCTAATCCCCAGCATCCTCTGCAGAGTTCTCAACACCTTGTGGCCGAAAGGTCCTTCAGATTGTCCAGGCACCCACCCCGAAAACCAG-----CCCTGGCATGGGGGTGCTGACCC-CTCCCGGAGCAGTGGGGTGCAGGGCTCATAAGGCGGGGTCTGCAAAGCATGCTGGGGTCTTGCTCTGTGCTTACTCCAAGGATGCAGCCCG s panTro1.chrUn_random 4123640 989 + 240967748 GGAGAGGCTCTGTCC-CTAAGAAAGGTCATGCACTTCAGGGTAGGTAAGGTGGACAGGCAAGGCCTGG-TGACCTCAGACC-------------ATCTTTGTG-CCTCCAGAAGCCGTAACTCACCTCAAAG-AGGTTTTCCTGCTGTAGGGAACTGTCTCTGAGCAACAGGGGCAGACTTCACAGCTCAGGCACCCTCCTGAAGGTAAGAGGCACTGGGCTCGCCTATCAAAGACACTCTCCTGTCCCCGCAGGTTCTCCTATGTCCCATCAGGGAGCTGGGCTCCAAAGTCTCCCGCCCTGCTTCTCCTAGAGAATGCAAAGGCTGCCTCTCTTCCCTCCCAGTGTAACCTGACCCTCCTCTGTGCCCCTTGGCCACCCTTACATCCTCTAGCTCCTTCTGACACCTTCTTTTTGACTGTTCACAGAGGGCAG-GATCTGAAGCC-----------TGCAGAG-----GTGACCCTT---GGTGCCTTGTGCAAGGC-----------------TGGCCAGCAAGTAAGC-ATGACTTTTGGCTCTGCTGCCAGCTGGGCCATTTGATCTACACACA------CTTTTCTGCCTCTACCTGGAGCTAGGCGA-GGCTCTCTATAGAATGGGTACTTGTCAACAAAGTGGGCTTAGACTCCGGGCAGTAGCAGTTGAGGCAGGAGCAGTGGGAGGAGGCAGGAGCAGTGGGAGAAGCCTGGGCTAATGGCAAGCGGCCAGTCCCCTCTGTGAGCTGCCCACTTGTCCCAGGCTCTGCCATGGCCCTTCCTCTGATTTTTAGGAGCTTTCATGAGGCCTCGCACAGCCT-GAAGGAGCAGAGCTTGTTGTGCTAATCCCCAGCATCCTCTGCAGAGTTCTCAACACCTTGTGGCTGAAAGGTCCTTCAGATTGTCCAGGCACCCACCCCGAAAACCAG-----CCCTGGCGTGGGGGTGCTGACCC-CTCCCGGAGCAGTGGGGTGCAGGGCTCATAAGGTGGGGTCTGCAAAGCATGCTGGGGTCTTGCTCTGTGCTTACTCCAAGGATGCAGCCTG s canFam1.chrUn 6382958 806 + 91062872 AGGGCGGCCCAGCCCACCCAGAGTAGCCAGGAGCATCCCAGTAGGTCAGGCGGGTGGCCGCGGCAGGGATGACCCCTGCCCCAGCTGTAACTCTCCCACTGTGTCCTCCAGAAGCTGCAACTCCACGAGATGCCAGTTTTCCTGATGGAGGAGACTGTCTGCAGGCAAC---------CCCCACC-CTCAA-----CCTCTGAGAAGAAG-------------------------------------------GGTGcccct------cctca--------------------cccctccccgcccctc----------------ctgcctctcctccatccc-------tctGGCA-------GTGCTCATTG-----------------------CTTCCAGCATCTTCTCTCTGGCTGTGCA-GGAGGGCGGTGACCTGCAGGCACTCTGTTCTGGGTAGAGTGTTTGCGACTCTCAGAGGCACATTTTGCAAATCGAGGAAGGGCCCCCAGGTGGCCAGCAAGCGGGCTAACCCTCTGGGCCCTGCCAGCAGCCGGGCCGTTCCATCAAAGCTCAGGTTCTCCCTCCCGTCTCTGGCTGGAGCTAGGTGAGGGCGCGCGCAGGAATGGCTGCTTATTAACAAGG-AGGCTTGGACTCAGGGCAGCGGCAGGT------------------CAAGGCCGTGGTGTAGGGAGGCTGCAGAG--GGTGGC---------GGCCCCTC------------------------CCCTGCC----CCCCTGCGCTG---------------CGTGGGGACTC-TGCAGCCCAGAAGGAGCAGGGTTTGCTGTGCTGA-CCGCAGC---------------CTTGACACC------------GG------AGAGTAGCCAGGGACCCGC----AGAACCAGGGCATCCAGGGTGTGCAGGTGGTAGCCTGCTTTTGGAGCAGGTGGATGGA-AGCTCTCGGCGCAGGGCCTGCACGGTGGCCCTGGACTTCGCGTTCTGCTTTCAAC-AGGATGAGGCTTG a score=2752.0 s hg17.chr17_random 2076125 30 + 2618010 GAGTGCCACTGCTCTTGGACTTTCCTTGAG s panTro1.chrUn_random 4124629 30 + 240967748 GAGTGCCACTGCTCTTGGACTTTCCTCGAG a score=151948.0 s hg17.chr17_random 2132753 1672 + 2618010 tagcgccagtgcctgggaaggcacccgttacttagcagaccaggaaagggagagagttagagaagactctgctccacgacctcttgtggaagatctttgtcaggcccacccgcagccatgcccacagccatctggaggcctaaacgtctccctgtgatgctgtgcttcagtggtcacgctccttgttcattttcatgttccactctgtgcacctagcctggccttctagacagcggtagcagaattagtgaaagtattaaagtctttgatctttccgagaaatgcatagaagaaataatgacgtaagctgtcccctctctgtctccacctcagctaccaaatagggaagggcccc-tgtccagtggtcacgtgactcacgtgaccttacctatcattggagatgacctgcactccttaccctgcccccttgccttgtatacaataagtaacagcacagccaggcattcggggccactaccggtctccgcgtcttggtggtagtgttcacccgggcccagctgtcttttattctatctctttgttttgtgtctttatttctatgatctatcatctccacacacaagagaaaaccccaaaggccctgtagggttggaccctacatctggcgcccaacgagaatttctctctcgctgtgtgaagttgcactttgagcgtgaaacacagcagaggatttcaatgacagattcctgaggattgaggtcaataagcttggtggtaagcttgggcactcagagtatcccagggacaccaagggacaggcctgtactaagtactcagcttatttaaattttataaaaactctccttaaagaaggagtggttaaaagtatctactgataagttaattgaactgtttgatgttgtagatcttctttgcccttggtttcctactgagggaactttagaacttaaggattgggatgagattggcagacattcaaaattgctcataaaggcgggcatattattccacccccaatttggtcaatctgggcttcggttcgctctgtcctagactctttacagactcaggaggacaacatggagactgatccctctttcctctgaggaggctgaggaagtgcttagttctttttcacctgaggatactgcacagattgaggccatagttctacagatggacctccactctgatattcctttggtgccaccacctacgccagagcctaccatgccccagttatcgctttatgatgaacttttaactgatctgaatgaatttatttcccccaaccagcaaaatccagctgaaagatattatcaacagccatcacagctgtaccctcctacctttcctcaaactctcaactctccagctatgcagATAGAAAATGAGATGATGCAGCCTGAAAAAGAGGCTCTAAACTATGTTTTCATGCAGCCTGGTACAGAGGCTCCAATTTCTACACAGCCCGGTGAAGAGGCTCTCAATtccctgcctggtaatgaggccctgaaccctatccctgttcagccctgctgtagagctctcaacttcttgcctattcagcctggtaatgaggccctcaaccctatctctgttcagccccgctgtggggctctcaactttctaccagttcagcccagttatgaggccctcaaccctatccatattcaacctaTTTTTCCAC s panTro1.chr19 40647469 1665 - 82489036 tagcgccagtgcctgggaaggcacccgttacttagcagaccaggaaagggagagagttagagaagactctgctccaccacctcttgtggaagatctttgtcaggcccacccgcagccatgcccgcagccatctggaggcctaaacgtctccctgtgatgctgtgcttcagtggtcacgctccttgttcactttcatgttccactctgtgcacctagcccggccttctagatagcggtagcagaattagtgaaagtatta--gtctttgatctttccgagaaatgcatataagaaataatgatgtaagctgtcccctctctgtctccacctcagctgccaaatagggaagggccccctgtccagtggtcacgtgactcacgtgaccttacctatcattggagatgacctgcactccttaccctgcccccttgccttgtatacaataagtaacagcacagccaggcattcggggccactaccagtctccacgtcttggtggtagtgttcactcgggcccagctgtcttttattct----ctttgtcttgtgtctttatttctatgatctgtcatctccacacacaagagaaaaacccacaggccctgtagggttggaccctacatctggcacccaacgagaat--ctctctcactgtgtgaagttgcactttgagcgtgaaacacagcagaggatttcaatgacagattcctgaggattgaggtcaataagcttggtggcaagcttgggcactcagagtatcccggggacaccaagggacaggcctgtactaagtactcagcttatttaaattgtataaaaactctccttaaagaaggagtggttaaaagtatctactgataagttaattgaactgtttgatgttgtagatcttctttgcccttggtttcctactgagggaactttagaacttaaggattgggatgagattggcagacattcaaaattgctcataaaggcggacatattattccacccacaatttggtcaatctgggcttcggttcactctgtcctagactctttacagactcaggaggacaacatggagactgatccctctttcctctgaggaggctgaggaagtgcttagttctttttcacctgaggatactgcacagtttgagaccatagttctagagacggacctccactctgatattcctttggtgccaccacctacgccagagcctaccatgccccagttatcactttatgatgaacttttaactgatctgaatgaatttatttcccccaaccagcaaaatccagctgaaagatattatcaatagccatcacagctgtaccctcctacctttcctcaaactctcaactctctagctatgcagATAGAAAATGAGATGATGCAGCCTGAAAAAGAGGCTCTAAACTATGTTTTCATGCAGCTTGGTACAGAGGCTCCAATTTCTACACAGCCCGGTGAAGAGGCTCTCAATTCCCTGCCTGGTAATGAGGCCCTGAACCCTATCCctgttcagccctgctgtagagctctcaacttcttgcctattcagcctggtaatgaggccctcaaccctatctctgttcagccccgctgtggggctctcaactttctaccagttcagcccagttatgaggccctcaaccctatccatattcaacttatttttccac a score=28972.0 s hg17.chr17_random 2134425 234 + 2618010 CTCTCTCTTCTCGTTCTCTTTTGACAAGTCAGTCTCCCTTGAAGCCTGGACCTCTCTTGGTAAATCAGGCTCCC----------------------------------TTGAAGCCTGGGTCTCTTTCAGAAATCAGGCTCCTTTGAAGCCTGGGTATCTTTTGGCAAATCAGTCTCCCTCGAAGCCTGGGTCTCTTTCGGCAAATCACACTTCCTTGAAGCCTGGGTCTTTTCTGACAAATCAGGCTCCCTTGAAACCTCAGGCTCT s panTro1.chr19 40649134 268 - 82489036 ctctctCTTCTCGTTCTCTTTTGACAAGTCAGTCTCTCTTGAAGCCTGGACCTCTCTTGGTAAATCAGGCTCCCTCAAAGCCTGGGTCTCTCGGTAAATCAGGCTCCCTTGAAGCCTGGGTCTCTTTCAGAAATCAGGCTCCTTTGAAGCCTGGGTATCTTTTGGCAAATCAGTCTCCCTCGAAGCCTGGGTCTCTTTTGGCAAATCACGCTTCCTTGAAGCCTGGGTCTTTTCTGACAAATCAGGCTCCTTTGAAACCTCAGGCTCC s fr1.chrUn 327451854 235 + 349519338 CTCTGGCTGATCAGGCTTCTCTGGCTGATCAGGCTCCCCTGGCTGATCAGGCTCCCCTGGCTGATCAGGCTCCT---------------------------------CTGGCTGATCAGGCTTCTCTGGCTGATCAGGCTTCTCTGGCTGATCAGGCTCCTCTGGCTGATCAGGCTCCTCTGGCTGATCAGGCTCCTCTGGCTGATCAGGCTTCTCTGGCTGATCAGGCTCCTCTGGCTGATCAGGCTCCTCTGGCTGATCAGGCTCC a score=187233.0 s hg17.chr17_random 2134659 2103 + 2618010 cttgaagcctggtccacagttactgcggcagcctcaggcccatgaaagacctgcccagcaggtaatctcgtctcatcctggcctacaggttctcaactcttcctccattcaaaattccaacctttttcctgcttctggtccagttgctactgtggtggccaataccaccattgccgctcataagcaatgagctatatacatccctgaaaatgacactccttttatgagggctatagctcagacaagagaatatggggatcccgaagcctggcaatttcctgtaattttacaacctccaatacccgccgtcccagtggcacaaaatcagccacagcctgctgatccttctcagcaggcggctgatcccgcaacccgtcaagatcaa---------------------cagcctgacaatcaggctgctcaggaaaataatcaggctccacaactgcctgccgctgagacacagccagttcctgatgttccagtagttcaggcagtagttcaacctgaccctatacatccaggccaggttcagctatgtcccgctacttaggaaagtttttttttc--ttttctttct--ttttttttttttttgagatggagtctcgctctgtctcccaggcATGCCCGGCTAAtttttttttttttttttttttttttttttttgtatttttagtagagacagactttcaccctgttagccaggatggtctcgatctcctgaccttgtgatccacctgcctgggcctcccaaagtgctgggattacaggagtgagccaccgcacctggccaagtttttcttttaaattcctcaaagatttcaaagaatctgtgaagcagtatggcaccaactccccttttgtccattccaaattaaaagccctagcagaaaataa-acacttggtgccctatgactgggagattttagcagtcagtcttatctaaatcccaatatttacaattcaggacttggtgggttgatgctatccaggaatgcattcgtctttgggctctaatcctcctgttaatgttacagccgacca-attactgggaat--gggccagt-gggctgcaa-ttcgaaaccaaactatactaaatgatgaggttattgaacaactgtggaaatgctgcttagatgcttgggacaagattcaagatgatgacaaactatgcccatgttttacagccgtcagacggggacaacatgaaccgtatccagactttattgcccatcttcaagacgcagcagaaaaagctatccctgatagccagggccaatgacttgttatagaacttatggcttatgaacaagtaaatccagactgtcaggtggctatttgccccattaaaggcaaaattccaccagggggtgatgtactcacctcatacattaaagtctgtgaaggcgtgaggggaactctgcgtacagcaatggtcatggcacaagccatggtctctattcgaatgcctggacaattccctggcaaatgcttcctatgcagccaatcgggatattctaaaagaaattgtccttggcatacaggccgctgttcttttcaacaccaacaaccaaaattttttcaacaacaagccccactttctactatatgcccacgatgccaaaaaggaaatcactgggtggctcaatgccattcaaaatttgatattgatggcaatcccttacggtcacttccaggtaaacgggaagaggggccagccctaggcccctccaaacaatggggcattcctcaactctgagcccctggcgtccagcaagatgagcgccttgccagcccaatccattcaacgtacatcccaattcccacttcagcaatttgtgccacaggatctaatggctctgccccaacacgaatctcagtacaatgcttgtcccctgccaccacaggctcagcatcagtagatctctgttgtaccagagatatttctctgttacctggagagccacctattgctgttcccacaggtgtttttggccccttgccgactggcagtgtcggtttgctatttgatctctcaagcctaaatttaaaaggtgttcaagtacatactggtgtaattgattctgactattcaggtgaaattcatattgtcattagctctg s panTro1.chr19 40649402 2131 - 82489036 cttgaagcctggtccacagttactgtggcagcctcaggcccatgaaagacctgcccagcaggtaatctcgtctcatcctggcctacaggttctcaactcttcctccattcaaaattccaaccttttttctgcttctggtccagttgctactgtggttgccaataccaccattgccgctcataagcaatgagctatatacatccctgaaaatgacactccttttatgagggctatagctcagacaagagaatatggggatcccgaagcctggcaatttcctgtaattttacaacctccaatacccgccgtcccagtggcacaaaatcagccacagcctgctgatcccgctcagcaggcggctgatcccgctacccctcaagatcaacagcctgagaatcaagcccctcagcctgacaatcaggctgctcaggaaaataatcaggctccacaactgcctgcagctgagacacagccagttcctggtattccagtagttcaggcagtagttcaacctgaccctatacatccaggccaggttcagctatgtcctgctacttaggaaagtttttttttcttttttcttttttcttttttttttttctgagatggagtctcgctctgtcgcccaggcATGCCCAGCTAA--TTTTTTTTTTGTTTGTTTGTTTTGtttttgtatttttagtagagacagagtttcaccctattagccaggatggtctcgatctcctgaccttgtgatccacctgcctgggcctcccaaagtgctgggattacaggagtgagccaccgcgcctggccaagtttttcttttaaattcctcatagatttcaaagaatctgtgaagcagtatggcaccaactccccttttgtccattccaaattaaaagccctagcag-aaataacacacttggtgccctatgactgggagattttagcagtcagtcttatctaaatcccaatatttacaattcaggacttggtggattgatgctgtccaggaattcattcgtctttgggctctaatcctcctgttaatgttacagccgaccacattactgtgaatgggggccagtggggctgcaacttcgaaaccaaactatactaaatgatgaggttattgaacaactgtggaaatgttgcttagatgcttgggacaagattcaagatgatgacaaactatgcccatgttttacagccgtcagacggggacaacatgaaccatatccagactttattgtccgtcttcaagacgcagcagaaaaagctatccctgatagccagggccaatgacttgttatagaacttatggcttatgaacaagtaaatccatactgtcaggtggctatttgccccattaaaggcaaaattacaccagggggtgatgtactcacctcatacattaaagtctgtgaaggcgtgaggggaactctgcgtacagcaatggtcatggcacaagccatggtctctattcaaatgcctggacaattccctggcaaatgcttcctatgcggccaatcgggacattctaaaagaaattgtccttggcatacaggccgctgttcttttcaacaccaacaaccaaaattttttcaacaccaagccccactttctactatatgcccacgatgccaaaaaggaaatcactgggtggctcaatgccattcaaaatttgatattgatggcaatcccttacagtcacttccaggtaaacgggaagaggggtcagccctaggcccctccaaacaatggggcattcctcaactccgagcccctggcgtccagcaagatgagcgccttgccagcccaatccattcaacctacatcccaattcccacttcagcaatttgtgccacaggatctaatggctctgccccaacaggaatctcagtacaatgattgtcccctgccaccacaggctcagcatcagtagatctctgttgtaccagagatatttctctgttacctggagagccacctattactgttcccacaggtgtttttggccccttgccgactggcagtgtcagtttgctatttgatctctcaagcctaaatttaaaaggtgtttaagtacatactggtgtaattgattctgactattcaggtgaaattcatattgtcattagctctg a score=65387.0 s hg17.chr17_random 2144385 729 + 2618010 tcccctgcctcagcctcccgagcagctgggactacaggcatgtgccaccacgcccggctaactttgtatttttagtacagatggggtttctccacgttggtcaggctggtctccaactcccgacctccggtgatctgcccagctgccgcctcccaaagtgttgcttgcgattacaggcttgagccaccgcTCACCCTGGCttttttttttttttttttttttttttttttttttt--cagacaaactctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcagcctctacctcccgggttccagcgattctcctgcctcagcctcctgggtagctgggattacaggcgcaggccaccacgcccggctaatttttgtatttttagggggtttcgccatgtcggccaggctggtctcgagctcctgacctcaggcgatccgcccgcctcggcctcccaaagcgctgggattacaggcgtaagccaccgcgccgggctctttcattctgtctttattttctgagatagagtctcgctcggacgctcaggttggactgcaacggcgtgatctcggctcgctgaaacttccgcctcccgggttcaagcgattctcctgtctcagcctcccgagtagctgggattattgacgggcagcaccacgcccggctactttttgtggtttttgtaTGTTCTGTCTTCTGCTCTTTAGTACCGCAT s panTro1.chr19 40645182 718 - 82489036 tcccctgcctcagcctcccgagcagctgggactacgggcatgtgccaccacgcccggctaagtttgtatttttagtacacatggggtttctccatgttggtcaggctggtctccaactcccgacctccggtgatccgcccagctgccgcctcccaaagtgttgcttgcgattacaggcttgagccaccgcTCACCCTGGCttttttttttttttttttttt-------------tggcagacaaactcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcagcctctacctcccgggttccagcgattctcctgcctcagcctcctgggtagctgggattacaggcgtaggccaccacgcccggctcatttttgtatttttagggggtttcgccatgtcggccaggctggtctccagctcctgacctcaggcgatccgcccgcctcggcctcccaaagcgctgggattacaggcgtaagccaccgcgccgggctCTTTCATTCTGTCtttattttctgagatagagtctcgctcggacgctcaggttggactgcaatggcgtgatctcggctcgctgaaacttccgcctcccgggttcaagcgattctcctgtctcagcctcccgagtagctgggattattgacgggcagcaccacgcccggctaccttttgtggtttttgtaTCTTCTGTCTTCTGCTCTTGAGTACCGCAT a score=48967.0 s hg17.chr17_random 2145114 395 + 2618010 AGAGCCGCAGAAGACTAGCGAGTCGAACAAACGGCCCCTCTTGCAGCAGTTGTTGATCACGGGGCTGCCCCCCGGTACTCATCCTGTGTCTCTCGTCCAAATCCCCGCTCCTCCTCAGCTATCACCTCTGCCGATGCTAGTGGTTTCCCTGGGTACCGGGAACCAAACTCTCATTCCCCAGGGGCCTAAGCCCCCCGTGGCCAGGCCCTTCTCAAGTCAGGGTT------CCTGCACATTCACAGTTACGGGTGGCCCTGGGAGTAACACCTGGCACCCAAACAGGTCACC-AGAGTCCACACATAGTCCACCTGCCCTCCCTGCGTAAGATCAGCTC--TTCCTCCTCCCGACGATAGATCAGGGTCAATGATCCCTGCCAAGATGGCGACTGCTCCAGCCTG s panTro1.chr19 40645900 394 - 82489036 AGAGCCACAGAAGACTAGCGAGTCGAACAAACGGCCCCTGTTGCAGCAGTTGTTGATCACGGGGCTGCCCCC-GGTACTCATCCTGTGTCTCTCGTCCAAATCCCCGCTCCTCCCCAGCTATCACCTCTGCCGATGCTGGTGGTTTCCCTGGGTACCGGGAACCAAACTCTCATTCCCCAGGGGCCTAAGCCCCCCGTGGCCAGGCCCTTCTCAAGTCAGGGTT------CCTGCACATTCACAGTTACGGGTGGCCCTGGGAGTAACACCTGGCACCCAAACAGATCACC-AGAGTCCACGCATAGTCCACCTGCCCTCCCTGCGTAAGATCAGCTC--TTCCTCCTCCCGGCGATAGATCAGGGTCAATGATCCCTGCCAAGATGGCGACTGCTCCAGCCTG s canFam1.chr2 13222480 364 - 87725193 AGAACCTGGGAGGAAT-GTTAGTGGGACAAACTAGATCCCCCGCCACTGCAGACTGGCTCAGGGCTGCAGCT-GATAATCATC--ATGTCTCTTCTCC---TCTATGATTCCACCCTACTGTCA-----GCTGGCCTCAGTGGCTCATCT-GGTGGCATGATCCGGCCCCTCCTCCTCGAGGAGCCTGAGCCCCTGGTCTCCAGGACCTTCTCAGGCCAGAGTTGTATTATCTGGCCATTTATAGTCACAGCTGTACCAAGGAGTATCACGAAACACTCCAATAGATCACCTGGAGTCGA------------TTATCCTAATTGTGTAACAGCAGCTTTATTCCTTTT-------ATA-AGCAGGGTCAACCCCTCCCCCT-------CGTCCTCCCCAGCCTG a score=88511.0 s hg17.chr17_random 2145509 1002 + 2618010 CTGGTCCAACCTGTCCAGCCACAGCTGTTGCTCGAAGGCTTGAAGTTCAATGGGACCCTCTCCCGCTTTCTACAAACTGGTTCCtttatttttatgtttatttatttgggacggggtctggctctgtcacccaggctggagtgcagtggtgcaatcactgctcactgcagcatccacctcccagcgtccacccatcctcctggcctcagcctccggaacagctggggtacaggtacgccccaGCCCGAACAGGTTTTCACTAGGTTGCCTGGGCTCTTTCTTTCTTTGTCTGTGTTTGTTTGTTGGTTGGTTGGTTGGtttttgtttgtttgtttcgagacggggctccggctctgccgccgggggctgcagtgcaatggcgcgatctcacctcactgcggccttctgggctcaagcgatcctcccacTGTGCCCGGCCTGAAGACAGCCTTTAGAGAAAGAAGCAGGGGgagttcttccgaggacagacaagatttctggagtttggaaagggtgagagactgggtcagcgaaaggaacattccggtctttatgttgggatgcaacgt---atagatacagggatgaGACCCAAAAGAGCCGGCAGAGGTTTGTCATCGTGCTCGCAAGGCAACTGCCGGTGGCTGATCCCGTAAAGGATACACATACCTAGAGCGGAGCCTAAAGATGCATCCAGCATGACGGGTGGAGCCACGATGCTTGGACTCGAGCTCTGCTCCTGTGCGTTCCGTGATCAATGGCTTATACTACCTGCACCTCAGTTTTTCCCGGGCAAAAAAGGAAGCTTGCTGCCGGTGCGTTGGCACCTGCCTTAAAGTGCCAGCTACTCAGCGGGCTGAAGAGGAAGAAGTtcctactaggaagacacgtggacacgtatgtttactgcagcactatttacaatagcaaa---gacttggaaccaactcgaatgcccatgaatg---ataggctggataaagaaagtgtggcacgtatacagcatggaat s panTro1.chr19 40646294 1002 - 82489036 CTGGTCCAACCTGTCCAGCCACAGCTGTTGCTCGAAGGCTTGAAGTTCAATGGGACCCTCTCCCGCTTTCTACAAGCTGGTTCCTCTAttttcatgtttatttatttgggacggggtctggctctgtcacccaggctggagtgcagtggtgcgatcactgctcactgcagcatccacctcccagcgtccacccatcctcctggcctcagcctctggaacagctggggtacagatacgccccagcccgAACAGGTTTTCACTAGGTTGCCTGGGCTCTTTCTTTCTTTGTCTGTGTTTGTTTGTTGGTTGGTCGGTTGGtttttctttgtttctttcgagacggggctccggctctgccgcc-ggggctgcagtgcaatggcgcgatctcacctcactgcggccttctgggctcaagcgatccccccacTGTGCCCGGCCTGAAGACAGCCTTTAGAGAAAGAAGCAGGGGgagttcttccgaggacagacaagatttctggagtttggaaagggtgagagactgggtcagcgaaaggaacattccgatctttatgttgggatgcaacgtataatagatacagggatgaGACCCAAAAGAGCCGGCAGAGGTTTGTCATCGTGGTCGCAAGGCAACTGCCGGTGGCTGATCCCGTAAAGGATACGCATACCTAGAGCGGAGCCTAAAGATGCATCAAGCATGACGGGTGGAGCCACGATGCTTGGACTCGAGCTCTGCTCCTGTGCGTTCCGTGATAAATGGCTTATACTACCTGCACCTCAGTTTTTCCCGGGCAAAAAAGGAAGCTTGCTGCCGGTGCGTTGGCACCTGCCTTAAAGTGCCAGCTACCCAGCGGGCTGAAGAGGAAGAAGTtcctactaggaagacacgtggacacgtatgtttactgcagcactatttacaat---aaaggggacttggaaccaactcgaatgcccatgaatacttata---tgg-taaagaaagt-tggcacgtatacaccatggaat a score=39077.0 s hg17.chr17_random 2146511 428 + 2618010 tactacgcagccataaaaaaggatgagttcatgacctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagcgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcatgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtacctatgttccaaacctgcacgtcctgcacatgtaccccagaacttGGGAGGGGGTGGGGGAAACCAAAagagagagcgagggagaggcggggaggggg-ggggaaagagagagagagacagag s panTro1.chr19_random 2005908 429 + 57627672 tactacgcagccataaaaaaggatgagttcatgtcctctgcgggaacgtggatgaagctggaaggcctcattctcagcaaactgacacaggaagcgaaaaccaaacaccgcatgttctcgctcctaagtgggagttgaacagtgagaacacatgggacacagggaggggaacatcacacgccgggccctgacggggcgtggggggcaaggggagagagagcattaggacaaatagccaacgcgtgcggggcttcaaacctagacgactggtggataggtgcagcaaagcaccgtggcacacgtgtatctatgttccaaacctgcacgtcctgcacatgtaccccagaacttgggagggggtgggggaaaccaaaagagagaacggaggagaggcggggggggggtgaagagagagagaaagagacagag a score=29341.0 s hg17.chr17_random 2146953 400 + 2618010 gagagagagagagagacagagagacagagacagacacagagagacggagagacagagagagagagagaaagagagagagagagagagagagagagagagagagagaCAGGAGAAAGAAG---AACTCCGGGTGGGTCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCGTGGCCTTCCCAAAGCGCAGTAGCCACGGTGGAAACGAAAGCGTGCCGCATAAGCCTACCGTCTACCGCCC-------GCACATCAGGAACCTCAC-----GGTACTTCAGGGAAGCAGTTAAGTCAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGGTGCTACCGTCTCTCACCTCCCTCTACTTTTAGG s panTro1.chr19_random 2108074 377 + 57627672 gagagagagaaagagaccgagaga--------------------------------------gagagaaagagagagagagagagagagagagagagagagagagagaggagaaagaAGTTCAATTCCGGGTGGATCCCATTCCTTTAAAAGGTCGCCACCCACTCGACTGCCAAGCTGAGATCCTAAGGACCTCCCCAAAGGAGGAGGTCGTGGCCTTCCCAAAGCGCAGTAGTCACGGTGGAAACGGAAGCGTGCCGCATAAGCCTACCGTCTACCGCCCACCGCCTGCAGATCAGGAACCTCCCTCACTGGTACTTCAGGGAAGCGGTTAAGTCAAGCCGGCGCGTCACAGGCACTCGGCGTGCAAGCCGCCCCGCAGATGCTACTGTCTCTTACCTCTCTCTGCTTTTAGG a score=28309.0 s hg17.chr17_random 2147353 370 + 2618010 AAACACGTTGTATCCCCGGAGGGggtgcaccgttcctggaggtactgcaacaccaggtcgatgcgtggagtggacggagcaagctcctattccatctccctgctccaaaaatccatttaatata-ttgtcctcggatagaggacgtatcagatattaaactgataagaacagatactacacttgatcttagccgaaaggccgagaagcgatG-CGCTCGCCTTCGCGCCCGCCGTCACCGTCCCACTCTCATCCACATTCAAGTCGCGGTGAGAGCCCCAGCCTCGCTCCTTGCCCCATTCCCTCTGTCTCGTCCACAGCGCTATTGACGCCCTTACACTCTCGGGCTGATTTCTTATTCTCCGCCTTTGAA s panTro1.chr19 41903060 371 + 82489036 AAACAGGTTGTAGCCCAGGAGAGggagccccattcctggaggtactgcaataccaggtcgacgcgtggagtggacagagcaagctcctatttcatctccctgctccaaaaatctatctaatataattgtcctctgatagaggacgtatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggacgagaagcgatGTCG-TCGCCTTCCTCCCTGCCATCACCGTCCCACTCTCATCCACATTCAAGACGCGGTGAGAGCCCCAGCCTCGCTCCTTGCCTCATTCACTTTGTCTCGTCCACACCAATATTGACGCCATTACACACTCGGGCTGATTTCTTATTCTCCACGTTTTAA a score=17198.0 s hg17.chr17_random 2147723 281 + 2618010 AAGGGAAATCTTACACCCGTGCTTCTTCCGGCGTTCCCGGGCTTTCATTTCGAATTTGCATGCCCC-GCCCTTTCACAGAGGGCGTGGCCTCCGCCGTTGACTCCGCCCCCGGGGCCGCCTCTGCCTGGGGGAGCCGGGGCTCCGCTGGGGGCGACTTCCTTGTTCGTATCGAGCCAGCGAAAAGACAGAACCGGAAGAGACCGGGGGCGAAGGCGACAGG---GGTCTGTGGAAGAGACCTGTCGGCGGAGAGCGGTCCACGTTTTCCTGGAGAAAGACGAGGC s panTro1.chr19 41904127 276 + 82489036 AAGAGAAATCTTACACCAGTTCTAGTTCCGGGGTTTCCGGGCTTTCATTTCGAATTTGCATGCCCCTGCCCTTTCCCAGGAGGCGTGGCCACCGCGGTTGACTCCACGCCCGGGCCCGCCTCCAGCTAAGG-AGCCGCGGCTGGGCTAGGGGCGACTTCCTTGTTTGTATG-----AGCGAAAAGACTGAACCAAAAGAGACAGGGGATGAAA---ACAAGATAGGTCTGTGGAAGAGACCTGTAGGCGGAGAGCGGTCCCTGTTTTCCTGGAGAAAGACGAGTC a score=64888.0 s hg17.chr17_random 2148019 875 + 2618010 CGGGCTGCGCTGGGCCTTTACTTCGCCGCCCGCGGGCGGGGAGACCGGCCCCGTACCCGAGGGGACGAGGGGACGAGGGGCCCATGCCCAGTCAGGGAAGCCGAAGGCCTGGAGGGGCTTCCGGGAGCAGGGGCTGGAGTTCCTCTGCCAGGCAGGAGGCTGGCACCAGACACCCGGCAGAGGGAGGCGGCG-----------AGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGGGCTGTGTAGGGAACGCTGCCTCTCTGCTCGGGACGTGGATTCCTTTCCCCTCCTCCTCGCCTGGCTACTTCTGACGCAGGTCGTCAGGACTCCGCTTGGGTGTCACCCGTGCAGGAAGCCTCCCTTAGTCAAGGGCCCTCGGCACCCGCCCCATATGTGACTAGCAGCCCTCCTGTGTATTTCATCGCGCCCCCGTTGTTTATATCAGCTATTCCACTCACCACCCTTCTGGGCAACCCTttatctcccgctctgaaatcccatcgctgagggctgggacccctcctcagtgcttatccctgtttccccgcgcgagtc----tggcgcctggcgtgtggaaggcgctcagtaaacgtttgtggagcgaagaaaCGACGCAAAG---GTGATGAGCAC-------------------GACGCAGTTAGGAGGCTATTGGCCCGGCGCGGGGGAAAAGGGGGAAGGTCGGGCTCGGGGTGGCAGGACCCCAGAGGGCAGGGGTGACTGCCGGGGTGCTCTTGGGGCAAGGTGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAAGTTTCTCTCCGAGGCACAGACTGCCGCCT---GCGGGCTCAGCATTTACCTCTCCCTTCCTCCTTCCTAACGCAAC s panTro1.chr19 41904428 898 + 82489036 CAGGCTGCGCTGGATCTTTACGTCGTCACCAGTGGGCGGGGAGACCAGCCTCGTACCC---------ACTGGACAACCGGCCCATTCCGAGTCAGGGAAGCAGAAGGCCTGGAGGAGCTTCGGGGAGCAGGGGCTGGAGTTCCTCTGCCAGGCAGGAGGCTGACACCAGACACCGGGCAGAGGGAGGCGGCGCATGGACGGCGAGGGCCCAGCAAGGATTCTCCCCAGCCCCTGTGCCTGCGTCTCCTGCGGCTTCTGTGCGCGGACCGTGTCCTGTGCTGTGTAGGGAAAgctgcttctctgctcgggacgtggattcctttcccctcctcctcgcctggctacttctgacgcgggtcgtcaggactccgcttgggtgtcacccgtccaggaagcctcccttaattaagggccctcggcacccaccccatatgtgattagcagccctcctgtgtatttcatcgca-ccccgttgtttatatcaactactccactcaccacccttctgggcaatcctttatctccccctctgaaatccgatcgctgagggctggga-ccctcatcagtgcttatccccgtttccctgcgctagtctaattagtgcctggcaagttgaaggcgctcagtaaacgtttgtggagcgaagaaaCGACGGATAGGGCGTAATGAGCACGACACACGCAATCAGAGAGGACGCAGTTAGGAGGCTATTGGCCCGGGGCAGGCGTGAAGGGGGAAGATCGGGCTCGGGGTGGGAGGACACCAGAGGGC-GGGGTGACTGTCGGGGTGCTC-TGGAGGAAGATGGGCGTCAAGGCCCCCAGCAAGGTTGGGATAAATTTTCTCTCTGAGGCACAGACTG-CGCCTGTAGCG---TCAGCATTTACCATTGCCGTCCTCCTTCCTAACACAAC a score=20397.0 s hg17.chr17_random 2148894 218 + 2618010 TTCAGCGGAGGGCTGAGGGCTCTACTGCGCATTACCTGGAAAACTTATTTCACTCCACGGCCCTAAGAGGTGGGCCTTATTATTAGCcacggccagggttagggtgaggccactcctccagggcagaatttcagggggtgcccacccccccgccctaaatcattcagcaatcaacataaattatagttcaacgcaatatATCTTATCTtgtgggccgc s panTro1.chr19_random 55303120 218 - 57627672 TTCAGCGGAGGGCTGAGGGCTCTACTGCGCATTACCTGGAAAACTTATTTCACTCCACGGCCCTAAGAGGTGGGCCTTATTATTAGCcacggccagggttagggtgaggcctctcctccagggcagaatttcagagggtgcccacccccccgccctaaatcattcagcaatcaacataaactatagttcaacgcaatatATCTTATCTtgtgggccgc a score=126711.0 s hg17.chr17_random 2149112 1431 + 2618010 aagccacccaggtgcccaggcaagagcctgaaggcacaagctgttccagtacagcaaagaaaataattagaataagaaaagttttactagagataggaaacggataggattatatctgaccattattaatcattagtttgtagcatcactctttgttctattaccataatgatctctgttctattatgattaccttgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccagaagacgagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcagacccggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcatccggaggctccaacgtctgtctccctgtgatgctgtgcttcagtggtcacgctccttgttcactttcatgttcagcctgtgcacctggctcctccttttaagttcttagaagacagcagtagcagaactagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcattggagatgactggcactccttaccctgcccccttgccttgactacaataaatagcagcgcctccaggcactcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgc--acacacgcgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCAGCTACAACATAATCAGGATATTCACGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTAGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACACAATCTCCGCCGCCCTGTCTTGTCATCCCCATTCTACAGCCCAgcacggtgtagtatggcagccgctagccacaggtatccagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacatgggattttgacggcagtgggagcaaaaTTCTCCCAAttctttttttttttttttttttttttcagacggaggttccgctcttgttacccagcctg-gagtccaatggcgcgatctaggctctctgcaa-cctccgcctcccgggttcaagcgat s panTro1.chr19 40635290 1421 - 82489036 aagccatccagatgcccaggcaagagcctgaaggcacaagctgttccagtatagtaaagaaaattattagaataagaaaagttttactagagataggaaacggataggattatatctgactattattaatcattagtttgtagcattactctttgttctattaccataatgatctctgttccattatgattaccctgggggaaaccaggccacacagagttaggagctgaagggccacagtgagaggtgaccaggagacaagagtgtgagccctcattcacgcccagagaagggccgctggagggctccttggcctagcggtaatgccagtgcctgggaaggccctggttacttagcaggccttggtctagcggtggccccagtgcctgggaaggcacccgttacttagcaggccgggaaagggaatctccctctctccaggggagacagagaacgctccgctccaccacctcttgtgggaggtctgacattagccaggccggcccgcagtcagccggaggctccaacgtct----ccctgtgatgctgtgcttcagtgggcacgctccttcttcactttcatgttccgcctgtacacctggctcctccttttaagttcttagaagacagcagtagcacaattagtaggagtaccacagtcttcgatctttctgataagtgcatagaagaaacgctgacgtttgctgtcctccctctccacctcggctaccacaaagggaaaggccccctgtccagtggacacgtgactcgcgtgacctatcgatcactggagatgactggcactccttaccctgcccccttgccttgactacaataaatagcagcgcctccaggcattcggggccactacctgtctgtctccgcgctttggtggcagtggtcccccgggcccagctgtctttcttcctatctctttgtcttctgtctttatctcttcgatctctcgtctccgcgcacacacacgaagagaaaacccacagacccggtaggggtggaccctacaTTATCTCGGCTACAACATAATCAAGATATTCATGTGGACTACTGAGTCTTTCGGTGCCCCCTTGCTGTTTTGGTTTTGTCCTGCGGCCGAGTGTTTCCCTCGCTTCACGCCAACCCAATCTCCGCCGCCCTGTCTTGTCATCCCCATTCTACAGCCCAgcacggtgtagtatggcagccgctagccacaggtatctagggagccctggaaatgtggtcagttctaatggagctgtgctgtaagtgtgaaatacacatgggatttTCACGGCAGTGGGAGCAAAATTCCCCCAA----------tttttttttttttttttaaacggaggtttccctcttgttacccagcctgagagtcaaatggcgcgatttaagctctccgcaaccctccccctcccgggttcaaccgat a score=65537.0 s hg17.chr17_random 2150543 724 + 2618010 tcccctgcctcagcctcccgagcagctgggactacaggcatgtgccaccacgcccggctaactttgtatttttagtacagatggggtttctccacgttggtcaggctggtctccaactcccgacctccggtgatctgcccagctgccgcctcccaaagtgttgcttgcgattacaggcttgagccaccgcTCACCCTGGCtttttttttttttttttttttttttttttt--cagacaaactctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcagcctctacctcccgggttccagcgattctcctgcctcagcctcctgggtagctgggattacaggcgcaggccaccacgcccggctaatttttgtatttttagggggtttcgccatgtcggccaggctggtctcgagctcctgacctcaggcgatccgcccgcctcggcctcccaaagcgctgggattacaggcgtaagccaccgcgccgggctCtttcattctgtctttattttctgagatagagtctcgctcggacgctcaggttggactgcaacggcgtgatctcggctcgctgaaacttccgcctcccgggttcaagcgattctcctgtctcagcctcccgagtagctgggattattgacgggcagcaccacgcccggctactttttgtggtttttgtaTGTTCTGTCTTCTGCTCTTTAGTACCGCAT s panTro1.chr19 40645182 718 - 82489036 tcccctgcctcagcctcccgagcagctgggactacgggcatgtgccaccacgcccggctaagtttgtatttttagtacacatggggtttctccatgttggtcaggctggtctccaactcccgacctccggtgatccgcccagctgccgcctcccaaagtgttgcttgcgattacaggcttgagccaccgcTCACCCTGGCttttttttttttttttttttt--------tggcagacaaactcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcagcctctacctcccgggttccagcgattctcctgcctcagcctcctgggtagctgggattacaggcgtaggccaccacgcccggctcatttttgtatttttagggggtttcgccatgtcggccaggctggtctccagctcctgacctcaggcgatccgcccgcctcggcctcccaaagcgctgggattacaggcgtaagccaccgcgccgggctCTTTCATTCTGTCtttattttctgagatagagtctcgctcggacgctcaggttggactgcaatggcgtgatctcggctcgctgaaacttccgcctcccgggttcaagcgattctcctgtctcagcctcccgagtagctgggattattgacgggcagcaccacgcccggctaccttttgtggtttttgtaTCTTCTGTCTTCTGCTCTTGAGTACCGCAT a score=48548.0 s hg17.chr17_random 2151267 395 + 2618010 AGAGCCGCAGAAGACTAGCGAGTCGAACAAACGGCCCCTCTTGCAGCAGTTGTTGATCACGGGGCTGCCCCCCGGTACTCATCCTGTGTCTCTCGTCCAAATCCCCGCTCCTCCTCAGCTATCACCTCTGCCGATGCTGGTGGTTTCCCTGGGTACCGGGAACCAAACTCTCATTCCCCAGGGGCCTAAGCCCCCCGTGGCCAGGCCCTTCTCAAGTCAGGGTT------CCTGCACATTCACAGTTACGGGTGGCCCTGGGAGTAACACCTGGCACCCAAACAGGTCACC-AGAGTCCACACATAGTCCACCTGCCCTCCCTGCGTAAGATAAGCTC--TTCCTCCTCCCGACGATAGATCAGGGTCAATGATCCCTGCCAAGATGGCGACTGCTCCAGCCTG s panTro1.chr19 40645900 394 - 82489036 AGAGCCACAGAAGACTAGCGAGTCGAACAAACGGCCCCTGTTGCAGCAGTTGTTGATCACGGGGCTGCCCCC-GGTACTCATCCTGTGTCTCTCGTCCAAATCCCCGCTCCTCCCCAGCTATCACCTCTGCCGATGCTGGTGGTTTCCCTGGGTACCGGGAACCAAACTCTCATTCCCCAGGGGCCTAAGCCCCCCGTGGCCAGGCCCTTCTCAAGTCAGGGTT------CCTGCACATTCACAGTTACGGGTGGCCCTGGGAGTAACACCTGGCACCCAAACAGATCACC-AGAGTCCACGCATAGTCCACCTGCCCTCCCTGCGTAAGATCAGCTC--TTCCTCCTCCCGGCGATAGATCAGGGTCAATGATCCCTGCCAAGATGGCGACTGCTCCAGCCTG s canFam1.chr2 13222480 364 - 87725193 AGAACCTGGGAGGAAT-GTTAGTGGGACAAACTAGATCCCCCGCCACTGCAGACTGGCTCAGGGCTGCAGCT-GATAATCATC--ATGTCTCTTCTCC---TCTATGATTCCACCCTACTGTCA-----GCTGGCCTCAGTGGCTCATCT-GGTGGCATGATCCGGCCCCTCCTCCTCGAGGAGCCTGAGCCCCTGGTCTCCAGGACCTTCTCAGGCCAGAGTTGTATTATCTGGCCATTTATAGTCACAGCTGTACCAAGGAGTATCACGAAACACTCCAATAGATCACCTGGAGTCGA------------TTATCCTAATTGTGTAACAGCAGCTTTATTCCTTTT-------ATA-AGCAGGGTCAACCCCTCCCCCT-------CGTCCTCCCCAGCCTG a score=22165.0 s hg17.chr17_random 2151662 240 + 2618010 CTGGTCCAACCTGTCCAGCCACAGCTGTTGCTCGAAGGCTTGAAGTTCAATGGGACCCTCTCCCGCTTTCTACAAACTGGTTCCtttatttttatgtttatttatttgggacggggtctggctctgtcacccaggctggagtgcagtggtgcaatcactgctcactgcagcatccacctcccagcgtccacccatcctcctggcctcagcctccggaacagctggggtacaggtacgTCC s panTro1.chr19 40646294 240 - 82489036 CTGGTCCAACCTGTCCAGCCACAGCTGTTGCTCGAAGGCTTGAAGTTCAATGGGACCCTCTCCCGCTTTCTACAAGCTGGTTCCTCTAttttcatgtttatttatttgggacggggtctggctctgtcacccaggctggagtgcagtggtgcgatcactgctcactgcagcatccacctcccagcgtccacccatcctcctggcctcagcctctggaacagctggggtacagatacgccc a score=3985.0 s hg17.chr17_random 2152682 63 + 2618010 ATGTCTGTTCTTGTAGTTTCTCTGACATGCCCGGCCTCCCGAGGGATGTCGCCGAGCACTCGC s canFam1.chrUn 60374036 63 - 91062872 ACGTCTTCGCGTGGAGTCCCTCGGACATGCCCGGCATACCGAGGGATGTCGTCGAGCACTCGC a score=63255.0 s hg17.chr17_random 2152745 700 + 2618010 TGGATATTCGGGCCGGAGCCCGACCCGACCTGGATCCTCTGCGCCGATTCGACGAGGAGAAGC--------------GCAGAGCGATAGCGCGAGGAGATCCACCAGCTAATGGCAGCCGGGTTCATCAAAGAGGTATTCCATCC--GCGAATGGCTTGCCAACCCTGTGCTTGTGATAGAGAAACGGG---GGAAATGGTGGATGTGTGTAGACTACACTGGTCTCAACAAAGCATGTCCGAAGGT--TCCCTACCCTCTGCCTCACAGCGAGCTAATCGTGGATTCC---ACTGCTGGGTGCGAGAC-CCTGGCTTTCCTCGACGCCTACTCGGGGTACCACCAAATCAGGATGA---GAGAGTCCGACCAGCTCGCGACTTCTTTCATCACGCCCTTCGGCATGTAC----TGCTATGTCACCATGCCGCTCGGTTTGAGGAATGTGGGCGCGACGTACCAGCGGTGCATGAACCATGTGTTCGGCGAACACATCGGTCGCACAGTCGAGGCCTACGTCGATGACATCGTAGT------CAAGACGAGGAAAGCTTTCGACCTCCTCTCCGACCTTGAAGTGACATTCCGATGTCTCAAGGCGAAAGGCGTCAAGCTCAATCCCGAGAAGTGTGTCTTCGGGGTGCC-CCGGGGCCTGCT-CTT-GGGTTCATCGTCTCCGAGTGGGGCATCGAAGCCAACCCGGAGAAGATCGCAGCCATCACCAGCATGGGTCCCC s canFam1.chrUn 60374099 699 - 91062872 TGGACATCCGAGCCGGAGCCCGACCCGTCAAGCAGCCTCTGCGCCGATTCGACGAGGAGAAGC--------------GCAGAGCCATAG-GCGAGGAGATCCACAAGCTAATGGCGGCAGGGTTCATCAAAGAGGTATTCCATCC---CGAATGGCTTGCCAACCCTGTGCTTGTGAGAAAGAAAGGGG---GGAAATGGCGGATGTGTGTAGACTACACTGGTCTCAACAAAGCATGTCCGAAGGT--TCCCTACCCTCTGCCTCGCATCGATCAAATCGTGGATTCC---ACTGCTGGGTGCGAAAC-CCTGTCTTTCCTCGATGCCTACTCAGGGTATCATCAAATCAGGATGA---AAGAGTCCGACCAGCTCGCGACTTCTTTCATCACACCCTTTGGCATGTAC----TGCTATGTCACCATGCCGTTCGGCATGAGGAATGCGGGCGCGACGTACCAGCGGTGCATGAACCATGTGTTCGGCGAACACATTGGCCGCACGGTCGAGGCCTACGTCGATGACATCGTAGT------CAAGACGAGGAAAGCTTCCGACCTCCTTTCCGACCTTGAAGTGACATTCCGATGTCTCAAGGCGAAAGGTGTCAAGCTCAATCCCGAGAAGTGTGTCTTCGGGGTGCC-CCGAGGCATGCT-CTTGGGGTTCATCGTCTCCGAGCGGGGCATCGAAGCCAACCCGGAGAAGATCGCAGCCATCACTAGCATGGGGCCCA s danRer1.chr9 10502767 706 + 28422069 TGCACAATCCATCTGAAATCCGACGCAACTCCAGTCGTGTATCCC----CCAAGAAGGGTACCTCTGGCCCTATGTGGCAGACTGAAAG----AAGAGCTGCAAAATATGGAGAGACAAGGGGTCATAATAAGGGTAACAGAGCCCACTGACTGGGTAAATGCACTCGTAGTTGTGGAAAAACCGCGAACCCGCAAACTTAGAATATGCTTAGACCCCCGTGACCTCAACAAAGC--GATCAAACGTCCTCACTACCCTTTACCGACGATTGAAGACATC----ACACCCAAATTAATGGGTGCAAAATACTTTAGTGTGTTGGATGCCCGTTCAGGGTACTGGGCAATCAAACTGACAGAGGAGTCATCCAAGCTCACGA---CATTTAACACTCCATTTGGAAGGTACAGATTTCGACGTCTC----CCATTTGGCATCATTTCCGCACAGGATGAATTTCAACGCAAAATTGATGAGACGTACGAAGGTTTAAGGGGT------GTTGTTGCAATCGTTGACGATATCCTGGTGTACGGACAAACCAAAAAGGAGCATGAC------GACAACTTGCATGCGATGTTGCAAAGGTCTCGTGAGAAAGGTGTAAAACTCAACCCTGAGAAAAGCATTGT--GAGTGCTACCGAGGTTCGCTACTTTGGTCACTGCTTATCTGCTGAAGGAATCAAGCCGGACCCCGAAAAGGTCTCAGCGATCAAAAACATGGAGCCAC a score=2743.0 s hg17.chr17_random 2153445 38 + 2618010 ATCAGGACTTTAAGGGCGTACAGAGGGTCATGGGATGT s canFam1.chrUn 60374798 38 - 91062872 TCAAGGACTTGAAAGGCGTACAGAGGGTCATGGGATGT a score=2161.0 s hg17.chr17_random 2154141 24 + 2618010 AAGGTGATGAGTGAGGTATCCGTA s canFam1.chrUn 30684478 24 + 91062872 AAGGTGACGAGTGAGGTATCCGTA a score=14016.0 s hg17.chr17_random 2154165 253 + 2618010 TCCCTGATGCGTACGAATCCCTCTTCTCCGTCAGCCTTGGCTGCTTACTCTGAACTCCGACGTTTTCAGGATCCACTTTTCGAAGACTCACAAAGCACGAAAGATATTCTGGCAGAAGAGATCTTTCTCCGAGGAAATTTC--ACGCAGAGGGGGTTCCCCCCCTTTAA--CACCGAGGGGAGGTCTGGCTATGCCGAGGTGAGG-CGACCCTT-CTTGATGAC--AAACTCGCTACGATGCGAGGTATATGATT-ACTTGA s canFam1.chrUn 30685346 261 + 91062872 TCCCGGAGGCGTAGGAGTCCCTCGGCTCGGTCAGCCTTGGCTGCTTACG-TGTACTCCGTCGTTTTTAGGATCCACTTTCGAAGTAGTCAAAAAGCACGAAAGACATTCTGGCAGAAAAGATCTTTTTTCGAGGAAAATTTCGACGCAGAGGGGGTTCCCCCCCTTTTAGCCCCCAAGGGAGGGTCGGGCTTTGCCGAGGCGAGGCCGACCCTTCCTTGATGACTAAACTTTGCGTGGGTGCGAGGTATATGATCAACTTGA a score=5620.0 s hg17.chr17_random 2154521 74 + 2618010 GGAGAATAAGAAATCAGCCCGAGAGTGTAAGGGCGTCAATAGCGCTGTGGACGAGACAGAGGGAATGGGGCAAG s panTro1.chr19 40585614 74 - 82489036 GGAGAATAAGAAATCAGCCCGAGTGTGTAATGGCGTCAATATTGGTGTGGACGAGACAAAGTGAATGAGGCAAG a score=53300.0 s hg17.chr17_random 2154595 699 + 2618010 GAGCGAGGCTGGGGCTCTCACCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCGAAGGCGAGCGCatcgcttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtgttgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGTAGAGGGAGGTGAGAGACGGTAGCACCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACTGCTTCCCTGAAGTACC-----GTGAGGTTCCTGATGTGC-------GGGCGGTAGACGGTAGGCTTATGCGGCACGCTTTCGTTTCCACCGTGGCTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGACCCACCCGGAGTT---CTTCTTTCTCCTGtctctctctctctctctctctctctctctctctttctctctctctctctgtctctccgtctctctgtgtctgtctctgtctctctgtctctctctctctctctctctctctctcctct s panTro1.chr19_random 55518934 643 - 57627672 GAGCGAGGCTGGGGCTCTCACCGCGACTTGAATGTGGATGAGAGTGGGACGGTGACGGCGGGCGCAAAGGCGACCGCatcgcttttcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatacgtcctctatccgaggacaatatattaaatggatttttggagcagggagatggaataggagcttgctccgtccactccacgcatcgacctggtattgcagtacctccaggaacggtgcaccCCCTCCGGGGATACAACGTGTTTCCTAAAAGCAGAGAGAGGTAAGAGACAGTAGCATCTGCGGGGCGGCTTGCACGCCGAGTGCCTGTGACGCGCCGGCTTGACTTAACCGCTTCCCTGAAGTACCAGTGAGGGAGGTTCCTGATCTGCAGGCGGTGGGCGGTAGACGGTAGGCTTATGCGGCACGCTTCCGTTTCCACCGTGACTACTGCGCTTTGGGAAGGCCACGACCTCCTCCTTTGGGGAGGTCCTTAGGATCTCAGCTTGGCAGTCGAGTGGGTGGCGACCTTTTAAAGGAATGGGATCCACCCGGAATTGAACTtctttctcctctctctctctctctctctctctctctctctctctctctttctct-----------------------------------------------------------------------ctct a score=39216.0 s hg17.chr17_random 2155294 430 + 2618010 ctctgtctctctctctctctttccccccccctccccgcctctccctcgctctctctTTTGGTTTCCCCCACCCCCTCCCaagttctggggtacatgtgcaggacgtgcaggtttggaacataggtacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcatgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcgctgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggtcatgaactcatccttttttatggctgcgtagta s panTro1.chr19_random 55621335 429 - 57627672 ctctgtctctttctctctctcttcacccccc-ccccgcctctcctccgttctctcttttggtttcccccaccccctcccaagttctggggtacatgtgcaggacgtgcaggtttggaacatagatacacgtgtgccacggtgctttgctgcacctatccaccagtcgtctaggtttgaagccccgcacgcgttggctatttgtcctaatgctctctctccccttgccccccacgccccgtcagggcccggcgtgtgatgttcccctccctgtgtcccatgtgttctcactgttcaactcccacttaggagcgagaacatgcggtgtttggttttcgcttcctgtgtcagtttgctgagaatgaggccttccagcttcatccacgttcccgcagaggacatgaactcatccttttttatggctgcgtagta a score=88258.0 s hg17.chr17_random 2155724 1002 + 2618010 attccatgctgtatacgtgccacactttctttatccagcctat---cattcatgggcattcgagttggttccaagtc---tttgctattgtaaatagtgctgcagtaaacatacgtgtccacgtgtcttcctagtaggaACTTCTTCCTCTTCAGCCCGCTGAGTAGCTGGCACTTTAAGGCAGGTGCCAACGCACCGGCAGCAAGCTTCCTTTTTTGCCCGGGAAAAACTGAGGTGCAGGTAGTATAAGCCATTGATCACGGAACGCACAGGAGCAGAGCTCGAGTCCGAGCATCGTGGCTCCACCCGTCATGCTGGATGCATCTTTAGGCTCCGCTCTAGGTATGTGTATCCTTTACGGGATCAGCCACCGGCAGTTGCCTTGCGAGCACGATGACAAACCTCTGCCGGCTCTTTTGGGTCtcatccctgtatc---tatacgttgcatcccaacataaagaccggaatgttcctttcgctgacccagtctctcaccctttccaaactccagaaatcttgtctgtcctcggaagaactcCCCCTGCTTCTTTCTCTAAAGGCTGTCTTCAGGCCGGGCACAgtgggaggatcgcttgagcccagaaggccgcagtgaggtgagatcgcgccattgcactgcagcccccggcggcagagccggagccccgtctcgaaacaaacaaacaaaaaCCAACCAACCAACCAACAAACAAACACAGACAAAGAAAGAAAGAGCCCAGGCAACCTAGTGAAAACCTGTTCGGGCtgggacgtacctgtaccccagctgttccggaggctgaggccaggaggatgggtggacgctgggaggtggatgctgcagtgagcagtgattgcaccactgcactccagcctgggtgacagagccagaccccgtcccaaataaataaacataaaaataaaGGAACCAGTTTGTAGAAAGCGGGAGAGGGTCCCATTGAACTTCAAGCCTTCGAGCAACAGCTGTGGCTGGACAGGTTGGACCAG s panTro1.chr19 41841740 1002 + 82489036 attccatggtgtatacgtgcca-actttcttta-cca---tataagtattcatgggcattcgagttggttccaagtccccttt---attgtaaatagtgctgcagtaaacatacgtgtccacgtgtcttcctagtaggaACTTCTTCCTCTTCAGCCCGCTGGGTAGCTGGCACTTTAAGGCAGGTGCCAACGCACCGGCAGCAAGCTTCCTTTTTTGCCCGGGAAAAACTGAGGTGCAGGTAGTATAAGCCATTTATCACGGAACGCACAGGAGCAGAGCTCGAGTCCAAGCATCGTGGCTCCACCCGTCATGCTTGATGCATCTTTAGGCTCCGCTCTAGGTATGCGTATCCTTTACGGGATCAGCCACCGGCAGTTGCCTTGCGACCACGATGACAAACCTCTGCCGGCTCTTTTGGGTCtcatccctgtatctattatacgttgcatcccaacataaagatcggaatgttcctttcgctgacccagtctctcaccctttccaaactccagaaatcttgtctgtcctcggaagaactcCCCCTGCTTCTTTCTCTAAAGGCTGTCTTCAGGCCGGGCACAgtggggggatcgcttgagcccagaaggccgcagtgaggtgagatcgcgccattgcactgcag-ccccggcggcagagccggagccccgtctcgaaagaaacaaagaaaaaCCAACCGACCAACCAACAAACAAACACAGACAAAGAAAGAAAGAGCCCAGGCAACCTAGTGAAAACCTGTTcgggctggggcgtatctgtaccccagctgttccagaggctgaggccaggaggatgggtggacgctgggaggtggatgctgcagtgagcagtgatcgcaccactgcactccagcctgggtgacagagccagaccccgtcccaaataaataaacatgaaaaTAGAGGAACCAGCTTGTAGAAAGCGGGAGAGGGTCCCATTGAACTTCAAGCCTTCGAGCAACAGCTGTGGCTGGACAGGTTGGACCAG a score=48222.0 s hg17.chr17_random 2156726 396 + 2618010 CAGGCTGGAGCAGTCGCCATCTTGGCAGGGATCATTGACCCTGATCTATTCGTCGGGAGGAGGAAGAGCTGATCTTACGCAGGGAGGGCAGGTGGACTATGTGTGGACTCT-GGTGACCTGTTTGGGTGCCAGGTGTTACTCCCAGGGCCACCCGTAACTGTGAATGTGCAGG------AACCCTGACTTGAGAAGGGCCTGGCCACGGGGGGCTTAGGCCCCTGGGGAATGAGAGTTTGGTTCCCGGTACCCAGGGAAACCACCAGCATCGGCAGAGGTGATAGCTGAGGAGGAGCGGGGATTTGGACGAGAGACACAGGATGAGTACCGGGGGGCAGCCCCGTGATCAACAACTGCTGCAAGAGGGGCCGTTTGTTCGACTCGCTAGTCTTCTGCGGCTCT s panTro1.chr19 41842742 394 + 82489036 CAGGCTGGAGCAGTCGCCATCTTGGCAGGGATCATTGACCCTGATCTA-TCGCCGGGAGGAGGAAGAGCTGATCTTACGCAGGGAGGGCAGGTGGACTATGCGTGGACTCT-GGTGATCTGTTTGGGTGCCAGGTGTTACTCCCAGGGCCACCCGTAACTGTGAATGTGCAGG------AACCCTGACTTGAGAAGGGCCTGGCCACGGGGGGCTTAGGCCCCTGGGGAATGAGAGTTTGGTTCCCGGTACCCAGGGAAACCACCAGCATCGGCAGAGGTGATAGCTGGGGAGGAGCGGGGATTTGGACGAGAGACACAGGATGAGTACC-GGGGGCAGCCCCGTGATCAACAACTGCTGCAACAGGGGCCGTTTGTTCGACTCGCTAGTCTTCTGTGGCTCT s canFam1.chr2 74502349 364 + 87725193 CAGGCTGGGGAGGACG-------AGGGGGAGGGGTTGACCCTGCT-TA-----TAAAAGGAATAA-AGCTGCTGTTACACAATTAGGATA------------ATCGACTCCAGGTGATCTATTGGAGTGTTTCGTGATACTCCTTGGTACAGCTGTGACTATAAATGGCCAGATAATACAACTCTGGCCTGAGAAGGTCCTGGAGACCAGGGGCTCAGGCTCCTCGAGGAGGAGGGGCCGGATCATGCCA-CCAGATGAGCCACTGAGGCCAGC-----TGACAGTAGGGTGGAATCATAGA---GGAGAAGAGACAT--GATGATTATC-AGCTGCAGCCCTGAGCCAGTCTGCAGTGGCGGGGGATCTAGTTTGTCCCACTAAC-ATTCCTCCCAGGTTCT a score=20133.0 s hg17.chr17_random 2157122 222 + 2618010 ATGCGGTACTAAAGAGCAGAAGACAGAACAtacaaaaaccacaaaaagtagccgggcgtggtgctgcccgtcaataatcccagctactcgggaggctgagacaggagaatcgcttgaacccgggaggcggaagtttcagcgagccgagatcacgccgttgcagtccaacctgagcgtccgagcgagactctatctcagaaaataaagacagaat-aaaGAGCC s panTro1.chr19 41843136 223 + 82489036 ATGCGGTACTCAAGAGCAGAAGACAGAAGAtacaaaaaccacaaaaggtagccgggcgtggtgctgcccgtcaataatcccagctactcgggaggctgagacaggagaatcgcttgaacccgggaggcggaagtttcagcgagccgagatcacgccattgcagtccaacctgagcgtccgagcgagactctatctcagaaaataaaGACAGAATGAAAGagcc a score=100.0 s hg17.chr17_random 2207344 1 + 2618010 G s panTro1.chrUn_random 177423618 1 - 240967748 G a score=14080.0 s hg17.chr17_random 2207345 151 + 2618010 AATTCTTGGTATTATTCCTTTTGAGTACCCCTATTTATGAGAGAGAAAACGAAGGTTTTCTTTTCCGTAGCCCCACTTTATATCACATGGGGTGGTTGGGGGAGGGCATAGCTCATTTTAGTTCCAGGTGCCCATAGAGGTGGGAGTCACA s panTro1.chrUn_random 177423619 151 - 240967748 AATCCTTGGTATTATTCCTTCTGAGTACCCCTATTTATGAAGGATAAAACAAAGGCTTTCTTTCCCATAGCCTCTCTTTATATCACACGGGGTGGTGGGTGGAGGGCATATCTCATTTTAGTTCCAGGTGCCCACAGAAGTGGGAGTCACA s canFam1.chr10 37329840 127 + 72717409 AATCCTTGTGGTCAGACACATCAAGTACACAT-TTTGTAGTGTAGGAAACTGAG---TCCTTTCCTATAGCCCCTGTCTACAC----------------TGAAGGATATGTGCC----CAGTTTCAGGAGCCGAGAGCTGTCGACATTAGG a score=25626.0 s hg17.chr17_random 2207496 172 + 2618010 -ACCCCTGTCCTGTCCTCTTGAAACAGCTGGGAAGATCCCCAGGCCTGGAAGAACCCAGGGAACCTGGAGGATCCTT-------CATCGCATGCTGT--------CAGCTCCTGGTCATGTAGCTGGGGGAGTGGATGCCTCTACCTCATGGCAAAGCTGCCTCTT--CTATTTCTTCCCGTTTTGTCAC s panTro1.chrUn_random 177423770 172 - 240967748 -ACCCCAGTCCTGTCCTCTTGAAACAGCTGGGAAGGTGCCCAGGCTTGGAAGAACCCAGGGAACCTGGAGGATCCTT-------CATCGCATGCTGT--------CAGCTCCTAGTCATGTAGCTGGGGGAGTGGTTGCCTCTGCCTCATGGCAAAGCTGCATCTA--CTGTTTCTTCCCCTTTTGTCAC s rn3.chr3 163471873 180 - 170969371 -ACCTCCGCCCTGCCCTCCAGGCTAGTCTGAGGATGGTCCCTGACAAGCA--GACCCTGGGAATCT-TAGCATCTCTCTGTCCACAGCGCCTGCCGTACAATAGGCACCCCC----AATGTTGCTAGGAGACTGGACGCCTCAGCCCCAAGACAGAGCTGCCTCCT--GCCTCTTCTTCCACCTCACCAC s canFam1.chr10 37329967 157 + 72717409 AGCCCTGGCCTTATCCTCTGGAGACTACTGGGA------TATGGCCAGGCAGGGCTATGGGGACTTTGAGAGTCCCT----------CTCATGCTGT--------GGACCTCTAGATGTATCACCAGGAGAATAGATGCCCCTTGTCTG---------TGCCTCCAACTTCTTTCTTCTTTTTTTGTCCC a score=43249.0 s hg17.chr17_random 2207668 479 + 2618010 TTCTCTGGTTTCCTCT-TCTCTAACCTCAC--------CTCCAT----GATCTCCACCTT---AGAAGCCtgtgtgtgtgtgtgtgtgtg--------gtgtgtttgtgtgtTCATGGCTGCACACCTATGTGAGAA----TAAGAAAGGGTAGAA-AGCCCAGGTAGAAAGTAG-ACCACAGGGTTTTCCAGGA-CTTAGGAGCACTCATTTCCAAAGCAAACCTGATGGGTGGGGTGCATGCAAGGCCTTGGAAGCTGGATCCCTCCCTAATACTCTGTGCTCTTCCCAATTTCTGGGATATGGACCAGTCTTTGCCTTTTTTGGGGGCCTCAGTCTTCCTGTTGTAAAATGGATAGGTGGTCACAAAACTGCATAAACACATGCTCAGTGAAGACAGGGTGTCATGCTCAAT----ACCAGAGAGAATATTGGGATGGGGAGAGTTTGAGCAGACTTATGTGTCCACGGTA---GCTCAGGCCTCTGAACAGGGCAAATGCAGGTGAACATAAA s panTro1.chrUn_random 177423942 499 - 240967748 TTCTTTGGTTTCCTCT-TCCCTAACCTCACTTTAGAATCTCCACTTTAGATCTCCACTTT---AAAAGCCtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtgtttgtgtgtgCATGCCTGCACGCCTACATGACAACTTTTGAGA----GTAGAA-AGCCCAGGTAGAAAGTAG-AGCACAGGGTTTTCCAGGA-CTCATGGGCTCTCATTTCCAAAGCAAACCTGATGGGTGGGGTGCATGCAAGGCCTAGGAAGCTTGCTCCCTTCCTAATACTCTGTGCTCTGCCCAATTTCTGGGATATGGACCAGTCTTTGCCTTTTTTGGGGGCCTCTGTCTTCCTGTTGTAAAATGAAGAGTTGGCTACAAAACTGTATGAGCACATGCTCAGTGAAGACAGGGTGTCATGCTCAAT----ACCACAGAGAATATTGGGATGGGGAAATTTTGGGCAGACTTAGGTGTCCAC---ACATGCTCAGGACTCTGAACAGGGCCAATGCAGGCGAACATAAA s canFam1.chr10 37330124 453 + 72717409 TTGCAGGGATTCTGCTCTCCTTAACCATCC--------CTCAAT-----GTCTCCAACTGTGAAAAAGTCTGTTTCCATTTGTGTATGCCC-------ATGTACTTCTGGG---------------------GATGA----GGTGA----GTAAAATGGCCCATATTGGAAGGGGTTGTGCAAGGATAACAAGGATCTTAGGGACTCTAGTTTCCAAAGTAAATGTGCTGAGAGGGTTGAACTCTGTTCTAAGGAAGCCAAAGTAGTCACATTTCTTCTGGGATCTTCCTATGTACTGAGACCTGGACCA-TCCCTGCTTCTTTT-AGGGCCTCTGACTCCCAGATGTATAAAGAGCGTTGGGATGTGGAACTGTGAAAGTATGTGCACAG-GAGGATATGATCTCTGGCTCCATCCTCACTGGATGGGGTGTTCGTTTGGGTGGCCTCTG-GCAGGCACAGGTATACAA---G---TCTC----CTCT-AACATGGCTAAAGTGGCTGGACATGGA a score=3944.0 s hg17.chr17_random 2208147 46 + 2618010 GCACGGCACAGCCAGGTTTTCTTACCAGGGCTACGGGATGAAACAG s panTro1.chrUn_random 177424441 46 - 240967748 GCATGGCACAGCCAGGTTTTCTTTCCAGGGCTACAGGATGAAACAG a score=8723.0 s hg17.chr17_random 2208193 56 + 2618010 TGCACCACAGGCTCTGTTCTGGAGGCTGGTCCCGCAAGATTTTCCCACCTTCAACC s panTro1.chrUn_random 177424487 56 - 240967748 TGCACCACAGGATCTGCTCTTGAGGTCGGTCCCGCAAGATTTTCCCACCTTCAACC s canFam1.chr10 37330687 56 + 72717409 TGCACCAAGAGATCTGCTCAGTAAGCAAGTTCTTTGTGATGCTCTCACCTGCAACC a score=12316.0 s hg17.chr17_random 2208249 152 + 2618010 AGCAACTGTTTGATGAATTTCATGTCCTGTGAAGCCCATATCCACCCCCATTACAGTGAGGGGCACAGGGCACTAGACCTGTAAAATAATGTCTTTTGCCtttttttcttttcttttctttttctttttctttatctttttcttttAACTGA s panTro1.chrUn_random 177424543 144 - 240967748 AGCAACTCTTTGATGAATTTCATGTCCTGTGAAGCCCATATCCACCCCCATTACAGTGAGGGGCACAGGGCACTAGACCTGTAAAATAATGtcttttgcctttttttcttttcttttctttttctttt-------cttttt-ttttAACTGA a score=8194.0 s hg17.chr17_random 2208401 46 + 2618010 GTGGCTGTTTCTTCTTTCTCTTTTTCTGTTTTGTTTGTTTTTTAAC s panTro1.chrUn_random 177424687 46 - 240967748 GTGGATGTTTCTTCTTTCTCTTTTTCTGTTTTGTTTGTTTTTTAAC s rn3.chr1 71310949 46 + 268121971 GTGCCTATTCTTATTTTAACTTTTTCTGTACTCTTAGTTTTTTAAC a score=162424.0 s hg17.chr17_random 2208447 2007 + 2618010 TAATTTTTAAGAGGTCTTTACAggtcagctgtggtgcctcacatctgtaatttcaacactt-gagaggctgaggcgggcggatcatttgaggtcaggagttaaaaaccagcctggccaacctggtgaaaccccgtctctactaaaattacaaaaaa-ttagccgggaatggtggcacaagcctgtagccccagctactcaggaggctgagacagaagaattgctgaaacttgggaggcagaggttgcagtgagccgagattgcacgactgcactcaagacatggtgacagagttagtctctgtggaaaaaaaaaa----gagagagagagagggagagagagagTGCCCTTTATGGAAATGCGAGCCCCTTTGTAATTTCATGAGTTGTAAATATTTATTCCAATTTGGGAAtttcttttcttattgtggtgttctctttaagtttgttttggatgttattagtgttttgttttgctttgtttCTATGTAACTTctcactaaattgattcatagatttccattttcacaatacaatattttggcagaaatcttgtggaaactgtctaatcagtttaaaaaatttaaatacatataaaaaa-tcgaagaaatgtaaaaactgtcctgaagaataacaaagtttgtgagcttaaaatgacatatattcagacttagattaaagctatagtaataaaagctatctatggtagtaatgcaaaaataggcacaaagaaaactagaaaaactcgagagtccaactcagactcacacatttggacattttgtatattacaaaaaaggcacagaagaggagtg-----aagacagtcttctcggtaaatagccttgagtcaaccagttatttatgtgagaaa-----aaacactcctatcttatattattaacaaattccaatgaaaagtggattttaaattttaaggtcaaagctgaaaacaatatttctagtagataacatagataaatatgtccatgact--ggcacaggcccagatttctcgggacacaaaatgcattaattctcaagacaaaaatatgacaaattggactttattagaattaaaaccttctcttcataaaaaaaaagcttcaggagagctgaaaggcaagaacaaagtggaaatcaacatatgtcatatatttatgtggcaaaagacttttatctagtttatttaactaaatcccatcaattaataaacaaagatgcaatacattgaacaaaattggcaaacatgtgacttggagttccacatacagaaccgaagggccaacaagtagatgaacacatccacatccttatgcaccagaacaatgcatatgaaaactacaattgaataccactatgcaatcattaacatttttgaaaactgacaaaattaagtactagtgatgatgtcaagcaactggaactttcttataccattctgtgtgcaaactgttataacggcgttcaaaacctcttgagtagtaactccttaca-tacacgatgtacataagcacactctaggacccagaaactctgctactaggtatat-acacccaatagaaatgccagcatattttccaatgcagaaaaatgctctaagcagcattatttggtacttttccaaactgaaaaaaactcaaatgtgcatcaataataaaataactaaataaaacagctacatattcctttataaggggacattatacagatataaaattaattggagacatattaaaatatacaaaaatctaacaaatacaatTTAATTAGATTtaaaagtcctatccacagcaatcagccaatagaaaagaaaaaggcatacaaatagaaaaaaaaa--ttgaattctcttt-ctccatttgcaatatgagtcactatgtagacaatgctaaagtctttccaaaactccttttggagaaaacttgaaaagcctcctgaaatggataagcaagtaaagttttaggacacaaaaccaatgtacaaaaaccagtagtatttctatgcatcaacaacTTTGAATTCCTGA s panTro1.chrUn_random 177424733 2023 - 240967748 TAATTTTTAGGAGATCTTTACAggtcagctgtggtgcctcgcacctgtaatttcaacactttgggaggatgaggcaggtggattatttgaggtcaggagttcaaaaccagcctggtgaacctggtgaaaatccatatctactacacttacaaaaaaattagccgggaatggtggcacaagcctgtagccccagctactcaggaggctgagacagaagaattgctgaaacttgggaggcagaggttgcagtgagccgagattgcacgactgcactccagactgggtgacagagtgagtctctgtaaaaaaaaaaaaaagagagagagagagagggagagagagagTGCTCTTTATGGAAATGTGAGCCCCTTTGTAATTTCATGTGTTGAAAATATTTATTCCAATTTTGGAATTTCTTTTCTTATTGTGGTGTTCTCTTTAAGTTTGGTTTGGATGTTATTAGTGTTTTCTTTTGCTTTGTTTCTATGTAACTTctccccaaattgatttatagatttccattttcacaatacaatattttggcagaaatcttgtggaaactgtctaatcagtttaaaaa-tttaaatacatataaaaaaatcaaagaactgtaaaaactgtcctgaagaataacaaagtttgtgagcttacaatgccatatattcagacttagattaaagctatagtaataaaagctatctatggtagtaatgcaaaaataggcacaaagaaaactagaaaaactcgagagtccaactcagactcacacatttggacattttgtatattacaaaacaggcactgaagaggagtggagagaagacag-catctcggtaattagccttgtgtcaactggtcatttatgtgagaaagaaataaac----ctatcttatactgttaacaaatttcaa-gacaagtggattttaaattttaaggtgaaaattgaaaacaatatttctagaagataacatagataaatatgtccatgactttggcacaggccaagatttcttgggacacaaaatgcataaattctcaagacaaaaatatgacaaattggactttattagaattaaaaccttctcttcataaaaaaaaaccttcaggagagctgaaaggcaagaacaaagtggaaatcaacatttgtcatatattgatgtggcaaaagctttttatctagattattaagctaaatcccatcacttaataaacaaagatgca-tacattgaacaaaattggcaaagatatgactaggagttccacatacagaaccgaagggccaacaagtagatgaacatatccacatccttatgcatcagaacagtgcatattaaaactacaattgaataccactaagcaatcgttaacatttttgaaaactgacaaaattaagtactagtgatgatgtcaagcaactggaactttcttataccattctgtgtgtaaactgttataaccacattcaaaaccacttgagcagtatctccttacactacacgatgtatgtaagcacactctagaaaccagcaactctgctactaggtatatcacacccaacagaattgccagcatattttccaatgtagtaaagtgctcgaagcagcattatttggtacttttccaaactgaaaaaaactcaaatgtgcatcaataataaaataaataactaaaacagctacttattcctttataaggggacattatacagatataaaattaattggagacatattgaaatatacaaaaatctaacaaacacaatTTAATTAGATTtaaaagtcctatccacagcaatcagccaatagaaaagaaaaaggcatacaaatagaaaaaaaaaaattgaattctcttttctccatttgcaatatgagtcactacgtagagaatgctaaagcctctccaaaactacttttggggaaaacttgaaaagcctcctgaaatggataagcaagtaaagttttaggacacaaaaccaaagtacaaaaatcagtagcatttctatgcatcaacaacTTTGAATTCCTGA a score=7529.0 s hg17.chr17_random 2210454 51 + 2618010 ACATCTTCTGG-TTTTATTGCATTTTCAATTTTTTCCCTCCATTAACTATAC s panTro1.chrUn_random 177426756 51 - 240967748 ACATCTACTGG-TTTTATTGCATTTTCAATTTCTTCCCTCAGTTAACTATAC s canFam1.chr11 56025582 52 + 75769841 ACATGTCCTAGTTTTTACTGTGGTTTTCACCCCTTCCCTCGGTTATCGACAC a score=0.0 s hg17.chr17_random 2210505 1 + 2618010 A a score=91.0 s hg17.chr17_random 2210505 1 + 2618010 A s panTro1.chrUn_random 177426807 1 - 240967748 A a score=20790.0 s hg17.chr17_random 2210506 105 + 2618010 TTTTTT-CTTTTTTCAGCTAAACTAATTTATTCTTCTGTATAATTTCACCTTGTTAA-TAAACCCCAGGCCAAAAAGTGGGAATAAA--GTATTTGTCTGCATCCTGTT s panTro1.chrUn_random 177426808 107 - 240967748 TTTTTTTCTTTTTTCAGCTAAACTAATTTATTCTTCTGTATAATTTCACCTTGTAAAATAAACCCCAGGCCAAAAAGTGAGAATAAA--GTATTTGTCTGCATCCTGTT s mm5.chr4 45134494 94 + 154141344 TTTCTT-TTCTTTTCAGCTAAAATGAATCCTGTCTTTATTTTACTTCACCCTG--------------GACCAAACAATGAGTCTAAAAGGGTTTTGTATTCATCTCTTT s canFam1.chr11 56025634 97 + 75769841 TTTCCT-CTTTTTCCAGCTAAAATTAATT---------CAATATTTCACCTTGTTAATAAAACCCAGGACCAAAAAAGGGGAATAAA--AGGGTTTTCTACTCACTGTT a score=92401.0 s hg17.chr17_random 2210611 806 + 2618010 TCCTCATTTTGAAAA-CTAGTCTAGATGAAACCTATACTTGTTCTAGGGAGTTGGCATAGACAGCATTTATTTCCATTCTCTGCAGGGATGCCAGCCAGAAAGAGGGAGTT------------------------------------------------------------CCCCATTTTCAC---TTTGGTTAGACAGGACTCTGGATGGTTGTAGGGGAAAAGATCCAAACTCTAAGGGAGTCAAATC-AGACATTGCAAAGATTTATACATTTACTCTGGGAGCAATTATTGTGT-TAAATTTTGTGCAAAACACTGCGCAAACAGCAATTAAAG-----TGAAAATTATTAAGGCATTACCTTTACCTTGGGAAACTCACACTAGTCAGATTCTCCGAACCCCAGAACATAACAACAACC-TAGTAAAATCTTGTTCAGAGTGAAGAGAGGGTGGG---------AG------------CAGGAAGGTAAGTTTAAAAATTAGGCTGGGTGAATGAGATAATTACCCCTAGTCAAGCAGTGGAAGTATGGATGGCTTTGGGATGGGTGAAGACAAAAGAATCTCAGCAGAGGGTGCAGATAAAAAAAGGCAGAAACAC------AGGAGGCTTATGCAGGAAGAGGAATGAGTTTGCTGGACTGGGGAGAGTGACAGTAAAAAGCAGAGGATAATAGGCATCTCTGGTCATCTAGGGACTATAGGGTGGATTAGTTGGGGGTTACAGAATCAGTGAGGTACTTTTTAACAGTAGGATGGGTAAATAAGAGCTATAATTTGGAATAATTATGTAGCAA-TGGTGGTTAGGAGC---AATAGAAACTCAAAGTATTACATAAATAT-TTTTTTTCTTATTCTCCCACACAAGCGTTTTGCCT-------------TTCCTC s panTro1.chrUn_random 177426915 829 - 240967748 TCCTCATTTTGAAAAACTAGTCTAGATGAAATCTATACTTGTTCTAGGGAGTTGGCATAGACAGCATTTATTTCCGTTCTCAGCAGTGATGCCAGCGAGAA-GATGGAGTT------------------------------------------------------------CCCCATTTTCAC---TTTGGTTAGACAGGACTCTGGATGGTTGTAGGGGAAAAGTTCCAGACTCTAAGGGAGCCAAATA-GGACATTGCAAAGATTTATGCGTTTACTCCGGGAGTAATTATTGTGT-TAAATTTTGTGCAAAACACTGCGCAAAGAGCAATTAAAG-----TGAAAATTATTAAGTCATTACCTTTACCTTGGGAAACTCACAGTAGTCAGATTCTCCGAACCCCAGAAATTAACAGCAACA-TAGTAAAATCTTGTTCAGAGTGAAGAGAGGGTGAACAGCAACATAGTAAAATCTTGTTCAGGAAGGTAAGTTTAAAAATTAGGCTGGGTGAATGAGATAATTACCCCTAGTAATGCAGGGGAAGTATGGATGGCTTTGGGATGGGTGAAGACAAAAGAATCTCAGCAGAGAGTGCAGATAATAAAGGGCAGAAACCC------AGGAGGCTTATGCAGAAAGAGGTATGAGTTTGCTGGACTGGGGAGAGTGACAGTAAAAAGCAGAGGATAGTAGGCATCTCTGGTCATCTAGGGACTATAGGGTGCATTAGTTGGGGGTTACAGAATCAGTGAGGTACTTTTGAACAGTAGGATGGATAAAGAAGAGGTATATTTTGGAATAATTATGTAGCAA-TGGTGGTTAGGAGC--GAATAGAAACTCAAAGTATTACATAAATATGTTTTTTTCTTATTCTCTCACACAAGCCTTTCGCCT-------------TCCCTC s canFam1.chr11 56025731 860 + 75769841 TTTTAATTTCTGAAA-CTAGTCTGGATGGAATGATCACTTGCTGTAGGAAGTTGTAATAGGGTGCATTTACTAGCAATTGGGACAGAGATCTCTGCTAAGG-GGAGGAATTTTCTTGGAAGTTAGGTACCTCACAAAGCGCAGAAAACCTTCAAGTCAGGTTCAGCGATAACCCCGTGTTGTCAGGTCTGGCCATGTAGGACTCTGGCTGGCTGTGTGGGAAAGGG-ACAAACTCTAGGAGTGTCAGATCAGGACATTCCAGCTATGCATGCATTTACCCAGGGAATAGTCACTGTGTCTGAACCACGTGCAAGATGCTGTGCGAAGGGCAACTGAAGCTGAATCAGAATTAGTGACCATATACCTGCCCTTCAGGAAACACCTACT--CTGGATGTTCTGAACTCCGGTATTTGCCAGCAACCACCATACACGCACATCCAGAGACAGGAGAGGGGCCA---------GG------------GGGTGAGGGAAG--------------TGAGTGGCCGGGACACTTGCCACTGGT-----AGTGGAAGGCTGGCTGGGTCTGGGATGTGTGGATGC----------CAGCAGAGGAGCAGGGTGAGGGAGGCCGGGGGAGCAGGGCGAGGGGGCATATGCAGGAAGAGTGGAGAGTTGGCTGAAGCAGGAAGGGTCCGGGTGGGAACCAGACG--TGGGGGCCTCTGTGCTCATCTA-GGACTGGGAGTTGGACTTGGCAGGGGCTGCAGAGTTGGTGAGGGACTTCTGAGCCAGAGAGAGGGCAGGGCAGAGTGGTGG--TAGGAGGGCTATGGGGTAGTTAGTGGTGAGGAGGATGAAT-GGAACTCAGAGTTTTAGA-AAATAA-TCTTTTCATCCTAATTCCAGACAAGCCTGAGGCCTGAATTCTGAGCACTTCATC a score=31798.0 s hg17.chr17_random 2211417 168 + 2618010 TTAAACTGAGAACGGAGTGGTTTGCTATGATGT-TTTTAAATTCTCACAGACAAGCATTATTCTTTGC---TGCCTTTTAGTAAAGGTTAGTTTTAACCAAATTAAAGAAGATTGAATGGATTTTCTTGCTCATAATGGTTGAGTGCAACA-----TCTCATACCTTCTACTAGTTT s panTro1.chrUn_random 177427744 168 - 240967748 TTAAACTGAGAAAGGAGTGGTTTGCTATGATGT-TTTTAAATTCTCACAGGCAAGCATTACTCTGTGC---TGCCTTTTAATAAAGGCTAATTTTAACCAAATTAAAGAAGATTGAATGGATTTTCTTGCTCATAATGGGTGAGTATCACA-----TCTCATACCTTCTACTAGTTT s mm5.chr4 45135062 173 + 154141344 TTAAAGTGGGAAAGATCTTATTTCTTTCAGTGTCTTTCAGATTCTTACAGGCAAGGGCCACTTTGTGC---TGCCTGCCTGCACAGGTTGATTTTAACCCGTGCAACAATGAGAGACTGGA-TTCCTTGACCACAACAGTCAAGATCTGCACAGGCTTTCTAACCTCCTACTAGCTT s canFam1.chr11 56026591 161 + 75769841 TTCAA----GAAGATGGTCTTTTTTAGAGATGC-ATTCAGCTTCTTACAGCCAAGCA-----CTGTGCTCATAGTTGACAGCACAGGTTGGTTTTAACCTA-GCAAAGCAGATGGGATGGATTTTCTTGACAACCATGGCTGGGAGTTACA-----GCTCCTGTTCTCTTTCAGTTT a score=3687.0 s hg17.chr17_random 2211585 59 + 2618010 T------------------------------CAGTAT--AACTGAAGTAACAGAGTGTCAATACTCCATGGAGGGGTGCTCCGCTTGCTAA------- s panTro1.chrUn_random 177427912 59 - 240967748 T------------------------------CAGTAT--AACTGAAGTAACAGAGTGTCAATACTCCATGGAGGGGTGCTCCTCTTGCTAA------- s mm5.chr4 45135235 96 + 154141344 TTGGGAACTTTTAAAGGGCGCTCCAAGGACCCAACATTAAAAAGAAGTGGT-GAGTTTCACTACTCCACGT-GGGCCTCTGCTGTTGCTGAGTGACCT a score=6922.0 s hg17.chr17_random 2211644 61 + 2618010 GGCTCCC-------------TCCTCTG----GGCTAGGCCTTCT------------------------------ACACCATGGCTGTCCTGCTG-------TGGCTGGAGCTGGA s panTro1.chrUn_random 177427971 61 - 240967748 GGCTCCC-------------TCCTCTG----GGCTAGGCCTTCT------------------------------ACACCATGGGTGTCCTGCTG-------TGGCTGGAGCTGGA s mm5.chr4 45135331 114 + 154141344 GGCTCCCTGAGAAGGAAGTGTGCTCAGGGACGGCCACGCCCCCTCGTGTTGCCCCATCCCTCGCGTTGCCTAGGAAACCACAGC-GTCCTGCTGCAGTTGCTGGCTTCAGGGTGA s canFam1.chr11 56027111 59 + 75769841 GGCTCCC-------------CCCTCTG----CGTT--GCCTTGG------------------------------AGACCAAGTGCGTCCAGCTG-------CAGTTGAGGCTGGA a score=320.0 s hg17.chr17_random 2211705 17 + 2618010 ATTTGGATT-------------------------------GACCTC-----TG s panTro1.chrUn_random 177428032 17 - 240967748 ATTTGGATT-------------------------------GACCTC-----TG s mm5.chr4 45135445 53 + 154141344 ATCTGAACTTCAGATGCGGGAGCCTCCAGGCTTGGGTAAGGACCTCAAAATTG a score=-138.0 s hg17.chr17_random 2211722 12 + 2618010 TGTGTCTT-----------------CCTA s panTro1.chrUn_random 177428049 12 - 240967748 TGTGTCTT-----------------CCTA s mm5.chr4 45135498 29 + 154141344 CTGGGCTTGGGGGACAGCGGGCTGATTGA s canFam1.chr11 56027344 12 + 75769841 TGGGTCTT-----------------CTCA a score=40208.0 s hg17.chr17_random 2211734 181 + 2618010 GCACACAATAG-------GTGTC-----CAATTAGCATGGG-CAGAATCAAGCTCCTCCCTCTCACCATTT-----ATTTCTCCATTTGTCCCTTGTTG-------GGAATGGAGAG--------------TCCTGCCACTGAGTTCAGCCCAGGGTTG-------------AAGTTCAAATCTCAGCTGATACTTGGTGGATGTTGACTTTTTTGAGAAGAACTTGGGAGAA s panTro1.chrUn_random 177428061 181 - 240967748 GCACACAATAA-------GTGTC-----CAATTAGCATGGG-CAGAATCAAGCTCCTCCCTCTCACCATTT-----ATTTCTCCATTTGTCCCTTGTTG-------GGAAAGGAGAG--------------TCCTGCAACTGAGTTCAGCCCAGGGTTG-------------AAGTTCAAATCTCAGCTGATACTTGGTGGATGTTGACTTTTTTGAGAAGAACTTGGGAGAA s mm5.chr4 45135527 164 + 154141344 GCAGATAGGAAGATGGGCGTGTCGCAAACAGTAGGCATAGGCCAGAATCAAACTGCTCCTTCCC----TTTGCAACACTCCCCTATTTCTCCC------------------GGAGGA-----------------TGTGACTAGG------------------------------GTTCCAGTCCCATCTGACATCTGAGGCAGATTGACGGTCCCTAGAAGAGCTCTAGTGGA s rn3.chr5 62403897 151 + 173106704 GCAAACAGTCG-------GCATC-----TAATTAGCGAGGC-CAGAATCAAACTTTTCCTTCCC----TTTGCAGCACTCCCCGATTTCTCCT------------------GGAGGA-----------------TGTGGCTGGG------------------------------GTTCCAGTCCTACCTAACGTCTTAGGCGGATTGACCATCCCCAGAAGAGCTCAAGTCGA s canFam1.chr11 56027356 215 + 75769841 GCATACAGTAG-------GTGCC-----TAATTAGCATGGC-CAGAGTCAGGCTGCGCCCTCCCTCCGGTG-----CCCCCTCTCTGTGTCCACTCTTGGCGGGGAGTGGCGGAGGGGGCCCGGCAAGGGTCCTTGTAACCGCGTTGAGCTCCAGGTTGGGAGTTCAAGGCCAGGTTGAAATCCAAGCGGACACCTTGGGCATGCTGACTTTTCCCAGGAAAGCTTGGGACAG a score=802.0 s hg17.chr17_random 2211915 8 + 2618010 TAAAACAT s panTro1.chrUn_random 177428242 8 - 240967748 TAAAACAT s rn3.chr5 62404048 8 + 173106704 GCACAGAC s canFam1.chr11 56027571 8 + 75769841 TGAAGCAC a score=937.0 s hg17.chr17_random 2211923 5 + 2618010 TATAA s panTro1.chrUn_random 177428250 5 - 240967748 TATAA s rn3.chr5 62404056 5 + 173106704 AATAA a score=25729.0 s hg17.chr17_random 2211928 304 + 2618010 AGGCGCTggccaggcacggtgtctcatgcctgtattcctggcatattgattggctgaggagatagaattgcttgaggccaggaatttgataccagccttgtcaacatagtgagaccccatttatacaaaaaacttgaagcattaaaaacatttagccaggtgtgatagttccaaactgttgtctcagctatgctggatattgaggcagaggatcacttgagccaggagttctaggctgcggtgaactatgatcacgctactgcactccaaaca-ggcaaccacgcaagatgattcaaaaataaaa s panTro1.chrUn_random 177428255 305 - 240967748 AGGCGCTggccaggcacggtgtctcatgcctgtattcctggcatattgatgggctgaggagatagaattgcttgaggccaggaatttgataccagccttgtcaacatagcgagaccccatttatacaaaaaacttgaagcattaaaaaaatttagccagctgtgatagttccaaactgttgcctcagctatgctggacattgaggcagaggatcacttgagccaggagttctaggctacagggagctatgatcgtgctgctgcaatccaaccagggcaaccatgcaagatgtttcaaaaataaaa a score=1740.0 s hg17.chr17_random 2212232 18 + 2618010 TCTTTTATTATTCTTCAC--- s panTro1.chrUn_random 177428560 18 - 240967748 TATTTTATTATTCTTCAC--- s canFam1.chr11 56027589 18 + 75769841 ---TTTGTCATTCATCTCTGC a score=11312.0 s hg17.chr17_random 2212250 86 + 2618010 CCCTATAGTCTCTCCAGAACTTGTGCACTATGTAGCAGAAAGAATCAAACTCCCCAAGAGTTTGGTTCTTGCTTATGATTTGGTTT s panTro1.chrUn_random 177428578 86 - 240967748 CCCTATAATCTCTCTAGAACTTGTGCACTATGTAGCAGAAAGAATCAAACTCCCCAAGAGTTTGGTTCTTGCTTATGATTTGGTTT s rn3.chr5 62404072 55 + 173106704 CCAGAAAGTGTCTGTGGGATTTACGCCCTGTGCGCTAGAGAAAACCCA-------------CTGTGTC------------------ s canFam1.chr11 56027607 85 + 75769841 CCCCAAAGTCCCTCTGGGATTTGAACCCTGCGGGGCTGGAAGAGCCTGCCTTCTCTGAATTCTG-CTCTTGCCTGAGGTTTGTTTC a score=46677.0 s hg17.chr17_random 2212336 396 + 2618010 TCTGCTGCTTGGCTGCCCCGTCATGTCCCCATTTTGTATAAAATAAGAACC------CCCCAGTGAA--------------------------GTGGAGTTTCTCCCCAGCAGAGGGTCTCACCAAGGCCCCAAGACT-GGCA------------CTTTAGG-TGGAGGCTT--------GCCTTTCAGCCTCTG--AATAATAATTGATACTAAAATTGAGAAGT--TTTCCAGACACCAGCTTCCTGAAAGGAGCATCCAGTC-------AGAAGACAAGATGAGGTCAGTAGCGAAGGTGACTCAGG--CTGAGTGGGGAAGTCCACCAGCGTATCTGAAGACTGAGCTAGGGGAGG-GTTTCCCTAATGTTCACTCCTTCTGCCCTCCATATATTCCTCTACTTTTCC--CAAACTTCCCTCTGACATCCTCCAAACTTTCTATCTTCCCAGGGCTTTCTTG- s panTro1.chrUn_random 177428664 327 - 240967748 TCTGCTGCTTGGCTGCCCCCTCATTTCCCCATTTTGTAT-AAATAAGAACC------CCCAGGTGAA--------------------------GTGGAGTTTCTCCCCAGCAGAGGGTCTCACCAAGGCCCCAGGACTGGGCA------------CTTTAGG-TGGAGGCTT--------GCCTTTCAACCTCTGT-AATAATAATTGATACTAAAATTGAGAAGT--TTTCCAGACACCAGCTTCCTTAAAGGAGCACCCAGTC---------GAGACAAGATGAGGTCAGTAGCGAAGGTGACCCAGG--CTGAGTGGG---------------------------------------------------------------------CCGTACATTCCTCTACTTTTCC--CAAACTTTCCTCTGACATCCTCCAAACTTTCTATCTTCCCAGGACTTTCTTG- s mm5.chr4 45135778 363 + 154141344 CCTCCTGCTCCCCCGCCCCCCCCCCACCTAATTTTGTTTGAAAT--------------------------------------------------CTAAGTTTCCCCTTAA-ACAAGGTGTCCTGTGGGATCTAGTGCT-GT--------------CTTTAGGCTGGAGGTCCTAGCAAGAGGGTCCCAGCCTCTG--AGTAAAAACTAAGACCAAGTCCCAAGTGTA-TTTCCAGAA-----------CGAAGAGGAATTGGGCC-------AGCAGTCAAGATGTCGCCAGTGGGAAAGGTGTCCCAAGTACAGAATGGCAAAGTCTACCAGCAGATCT---TCCAGGCCCAGGTAGGT-GTCCTGCTGGCCTTTGCTC----------CCTTTCCCTCCCCTGGTCTCCCCACAAACTTTC--CTGGTCCTTTCTAATTTTTCTTTGTTCTGAGAGTTTCCCTG- s rn3.chr5 62404133 356 + 173106704 CCTTCC-CCCACCCGCTCCACGCACACCTTATATTGTTTGAAAT--------------------------------------------------CTAAGTTTCTCCTTAA-ACAAGGTGTCCTGTGGGATCTAGTGCT-GT--------------CTTTAGGCTGGAGGTCCTAGCAAGAGGGTCCCAGCCTCTG--GGTGGAAACTAAGACCAAGTTCCAAGTGTG-TTTCCAGAA-----------CCAAGGGGAATTGGGTC-------AACAGCCAAGATGTCGCCAGTGGGAAAGATGTCACAAGTACAGAATGGCAAAGTCTACCAGCAGATCT---TCCACGCCCAGGTAAGGCGCCCTGCTGGCCTCTGTTC----------CCTTTCTCTC----AGTTTCCA--CAGACTTTC--CTGGTCCCTTCTAA-TTCTTTTTGTTCTGCGAGTTTCCCCG- s canFam1.chr11 56027692 399 + 75769841 CTTTTGGCTTCTTTGCCCCTCC----CCTCTTTTTGTTTAAAATGAAAACCCCGATGCCTGAGCGGAACCCCATGCTTTCACTCAGACAGTGGGGTGGGTCATGCCCCAG-CCGGGTTGCCTAGATGGGTCTGGTCCTAGGCAGAGAGGACTTGTCCTGGGGTTGGGGTGTC-------AGTTTTTCAACCTCTGTGGGTCAGAATAGAGATCAAACCCCAGACAGGATTCCTGGACAATGAATTCCCAACAGGAGTGTCCAGGCCAGCAGCCAAGGTCAAGATGTCCTCAGTGGGGAAGGTGACCCAGGTTCCCAGCGGGAAACTCTACCAGCAGATCT---TCGAGGCTGAGGTAGG-------------------------------TCTGACCCTC------TTCTCT-------------CTG---CTCCCCAAACTTTCCTCCCGCTGAAGGCTTTTGTCA a score=12661.0 s hg17.chr17_random 2212590 67 + 2618010 GAAGTCCACCAGCGTATCTGAAGACTGAGCTAGGGGAGG-GTTTCCCTAATGTTCACTCCTTCTGCCC s panTro1.chrUn_random 5221943 67 + 240967748 GAAGTCCACCAGCATATCTGAAGACTGAGCTAGGGGAGG-GTTTCCCTGATGTTCACTCCTTCTGCCC s mm5.chr4 45136012 64 + 154141344 AAAGTCTACCAGCAGATCT---TCCAGGCCCAGGTAGGT-GTCCTGCTGGCCTTTGCTCCCTTTCCCT s rn3.chr5 62404366 59 + 173106704 AAAGTCTACCAGCAGATCT---TCCACGCCCAGGTAAGGCGCCCTGCTGGCCTCTGTTCCCT------ s canFam1.chr11 56028001 42 + 75769841 AAACTCTACCAGCAGATCT---TCGAGGCTGAGGTAGGT-------CTGACC---------------- a score=91.0 s hg17.chr17_random 2212657 1 + 2618010 T s panTro1.chrUn_random 5222010 1 + 240967748 T a score=1953.0 s hg17.chr17_random 2212732 7 + 2618010 CCAGGGA s panTro1.chrUn_random 177428991 7 - 240967748 CCAGGGA s mm5.chr4 45136141 7 + 154141344 TCTAAGA s canFam1.chr11 56028091 7 + 75769841 CCCGGGA a score=8720.0 s hg17.chr17_random 2212739 45 + 2618010 GTCTAATGAAGTAAAAGCTTTAAAATTGCTTTGATTTTAAAAATA s panTro1.chrUn_random 177428998 44 - 240967748 GTCTAATGAAGTAAAAGCTTTAAAATTG-TTTGATTTTAAAAATA s canFam1.chr11 56028098 44 + 75769841 ATCCAATGAAAT-AAGGCTTTGAAATTGCTTTCATTTTAAAAATA a score=91.0 s hg17.chr17_random 2212784 1 + 2618010 A s panTro1.chrUn_random 177429042 1 - 240967748 A a score=4952.0 s hg17.chr17_random 2212785 23 + 2618010 TTTTATTGATTCTTAAAATGTAC s panTro1.chrUn_random 177429043 23 - 240967748 TTTTATTGGTTCTTAAAATGTAC s canFam1.chr11 56028144 23 + 75769841 TCTTATTGGTTCTTAAAACATAG a score=9080.0 s hg17.chr17_random 2212808 63 + 2618010 CGACACAAAATTAGAATACCAATTCTTAAAATGCTTAAAAAGTAAATTAAGTGTAAGTTTACA s panTro1.chrUn_random 5222161 63 + 240967748 TGACACAAAATTAGAATATCAATTCTTAAAATGTTTAAAAAGTAAATTAAGTGTAAGCTTACA s canFam1.chr11 56028167 63 + 75769841 GAATACAAAATTAGAATCTCTATTCttgaaaagcaaagaatttacattaaaattgtaattaaa a score=7769.0 s hg17.chr17_random 2212871 100 + 2618010 TTTAATTATCTTATTTGATTCCtaattaaaatacaaaaaaattttttttgaaacaaggtcttgctctgtcacccagactggagtgcagtggtgagatctt s panTro1.chrUn_random 5222224 97 + 240967748 TTTAATTAACTTATTTGATTCCtaattaaaatacaaaaaaa---attttgacacaaggtcttgctctgtcacacagactggagtgcagtggtgagatctt a score=20015.0 s hg17.chr17_random 2212971 241 + 2618010 gggttattgcaacctccaccccctaggttcaagcgattctcatgcgtcagcctcccaagtagctgggactacaagcacacaccaccaattggctaatttttgtgtttttagtagatatgaggttttgccatggtgcccatagtggtcgcaaactcctcgtctcaagtgattcacccacctcggcctcccaaaatgctgggattacaggtttgagtcaatacacctgaccttat-tttttttt s panTro1.chrUn_random 63532931 241 + 240967748 gggttattgcaacctc-accccctaggttcaagagattctcatgtgtcagcctctcaaatagctgggactacaagcacacaccaccaattggctaatttttgtgtttctagtagatatgaggttttgccatggtgcccatactggtcacaaactcctggtctcaagtgattcacccacctcggcctcccaaagtgctgggattacaggtttgagtcaccacacctgaccttaaatttttttt a score=20230.0 s hg17.chr17_random 2213212 109 + 2618010 ttaaattataggtaaatttaaattaCTCAGAAATAGTCAGAATTAACCGTTGGATACCCTGAATCTTTTTCCCATGCATA-----------AGCCTTTCTAATCTTTCTATTCAAATTTA s panTro1.chrUn_random 63533172 109 + 240967748 ttaaattataggtaaatttaaattaCTCAGAAATAGTCAGAATTAACCGTTGAATACCCTGAATCTTTTTCCCATGCATA-----------AGCCTTTCTACTCTTTCTATTCAAATTTA s canFam1.chr11 56028230 120 + 75769841 ttagattaaatttaagcttaaattattcagaaatagccagaattaaccattggatatcttgggacctttttctatgcacaaaagcattcctagttttttttttttttctatttaaaaatg a score=78533.0 s hg17.chr17_random 2213321 509 + 2618010 GGATTTGATTCGGTTCTAGTGTTTTAAAACCTGCTTTTTTCCTTCAAAGAA----ATGCAGACCATCTCTCAG-------GCCAATGGACA-TCACGGATTTTCTGATGCTTAGAGGCTGACTGGTTGTTTATCTATGACCTCCCATAA----TGTACTTAAG---TAACACCCTCTTGATGATGGGGTTAAGTTGTTGAAATTACCTTGTCTT-----------TTCTGAAGCACTACGTGGAAAATATTAGATCTTGAAAGAAACACATAAACCCATACCACACACTTCCTTTGAAATTCTCT-GCTGCTTATTTAAA--GAGATGtttattcctgactaaggtcctacattacactctctgtagaacttttggaaactataaaagtacaagagaatcaataaagcaatttaatttctcacaggatcctgattcc--tataagaaacacatcaattcc-----------------------------------------tataattcgg--------------catatttcctctcaatcatttttctacaca-----------ttttaaattt-----------------------------------------tgagttctaa-tgtat-----------aagtttggttatacttttt s panTro1.chrUn_random 63533281 510 + 240967748 GGATTTGATTCAGTTCTAGTGTTTTAAAACCTGCTTTTTTCCTTCAAAGAA----ATGCAGATCATCTCACAG-------GCCAATGGACA-TCACGGATTTTCTGATGCTTAGAAGCTGACTGGTTGTTTATCTATGACCTCCCATAA----TGTACTTAAG---TAACACCCTCTTGATGATGGGGTTAAGTTGTTGAAATTACCTTGTCTT-----------TTCTGAAGCACAACGTGGAAAAATTTAGATCTTGAAAGAAACACATAAACCCATACCACACACTTCCTTTGAACTTCTCT-GCTGCTTATTTAAA--GAGATGtttattcctgactaaggtcctacattacactctctgtagaacttttggaaactataaaagtacaagagaatcaataaagcaatttaatttctcacaggatcctgattcc--tataagaaacacatcaattcc-----------------------------------------tataattcgg--------------catatttcctctcaatcatttttctacaca-----------ttttaaattt-----------------------------------------tgagctctaagtgtat-----------aagtttggttatacttttt s rn3.chr5 62405125 586 + 173106704 GGGTCTTTTTCTGTAATAGGGTTTTGAATCTCCCTTTTCTCCTT----------------GGCAGTCTCTCAGAACTCATGCCCATGG----CCAGGGGTATTCTCACAC-------CTCACTGGTACCCAGTCTCTGACTCCTTAGAGGACTTGTCTTACAGGGTTAAAGCTTCCTTGGCCAT--GGCTAA--TGTAAAGATTGCTATGCCTT-----------CTTGAATGTACCTTGCAGA-------------CCAAAGAGACCTACAAA----------------CATTAAATCTAGTGT-GCTGCTTATCAAAG-TGATATTTTTATTACTCATTTGAGCCATAAATCATCCTTCCCGTATAACCTTTAGAAATAATAAAACTAT-AGAGAAACCAGAGAGC--TCAAATTACTCACATGACTCAGCTCCTTATATAAGCAAGATATTATTCTCAACCTTCTGTTGTTTTTCCATCTATTTTTAAATTTGAAATTTAAAATTCAGGTTGTATTTTTTTCTTTCTTTTTTTTCTTTCTTTTTTTTGCAAAAAAGGTGGCGTTGTTAAATGTACTAGAAGGGACAGCAGGTCTAGCAGTATCCAAAGTGCCCATAATCTTTAA-CTTATGCTTTAAAACAAGATTTATATTTATTTTGT s canFam1.chr11 56028350 513 + 75769841 -ggtttgattcaatgccagtgttttgaaacctgcttttcccctattaacagtatcacacagaccttccc-cat-------gccaagaggcagtcatgtatttcaggatgctgagaggttgccttattgttaatctaggacttaccataa----cgtattcaag---taataccctcttgacaac-catataggttgctgggattgccttgttgtctataaaAAGCCTATAAAAAACTGCACGGACAAGAT---ATCTTAAAAGAAACACACAAACTTGAACC-----CTTCCTTTGAAGTTCTGTAACTGCTTATTTAAAAGGGAGTTTTCATTCCTACTTTAAGCCCTAaataatgctttctgtagaagacttggaaattgtacaagcataaggagagcacagaaac----aaattactcacatgatcctgctgcc--tggaagcaacacaccattctt-----------------------------------------cac-atttag--------------cacactttctctgggtcatttttctaagag-----------tttaaagttt-----------------------------------------tgaaatcatactgtat-----------aattttggttataattttt a score=3181.0 s hg17.chr17_random 2213830 9 + 2618010 aatgtgtgc s panTro1.chrUn_random 63533791 9 + 240967748 aatgtatgc s mm5.chr4 45137842 8 + 154141344 AATTTGTG- s rn3.chr5 62405731 9 + 173106704 AGTATGTGT s canFam1.chr11 56028863 9 + 75769841 aatttatgc a score=24021.0 s hg17.chr17_random 2213839 66 + 2618010 ctttcattaatttgtttaatgttatatcatctcataatcacttctccatgtgataaaaaattcttt s panTro1.chrUn_random 63533800 66 + 240967748 ctttcattaatatgtttaatggtatatcatctcataagcacttctccatgtgataaaaaattcttt s mm5.chr4 45137850 64 + 154141344 TTTTAATTGCTATGTTTAATGATACACTATTGGGTAATGG--TTTCCTTGCCATAAGACATTTGTG s rn3.chr5 62405877 64 + 173106704 TTTTAACTAATAGGTTTAATGATACATTATTGGTTAACAG--TTTCCTTGTCATAAAAAATGTGTG s canFam1.chr11 56028872 61 + 75769841 ttttaattgatatgttttatggtatatca-----aaagcatttccccatgtcataaaaaaagcctt a score=0.0 s hg17.chr17_random 2213905 8 + 2618010 gtacatcc a score=812.0 s hg17.chr17_random 2213905 4 + 2618010 gtac s panTro1.chrUn_random 63533866 4 + 240967748 gtac s mm5.chr4 45137914 4 + 154141344 GTCA s rn3.chr5 62405941 4 + 173106704 GTAA a score=1117.0 s hg17.chr17_random 2213909 4 + 2618010 atcc s panTro1.chrUn_random 63533870 4 + 240967748 atcc s mm5.chr4 45137918 4 + 154141344 TTTC s rn3.chr5 62406137 4 + 173106704 ATTC a score=164272.0 s hg17.chr17_random 2213913 544 + 2618010 catttttaatacatatatgtagctccaaagaaaaggcatatcttgtttactcttctaatcccgtagtattcgaaa--------------------------actttgtttttc---------caattctttgagataataaaCTG-GTT--------------AGGGTTAGTATTT------TGGTCCCCATTTAAATTTTCTAAGATTTGCCTTTCTACAAGTGGCTAAGTGACTGTTACAAGGAGAAGAGCCCTCCTGAAGGGG-TGTGCCATGGGGTT-GAGGCCTCCCTGCAAAGTGCCTTCCTTGTGGCAGATCCCCATGTGTCTTTCTAAAAT-----------CAGCACAGTCAGACTGAGAGTGATTGG-AATTCTGCAGCT-----GTGAGCCCTCTCGAATCTTCCTTGAATTCAGATGCAACTAATCTCCTCCTTGGTGGACACCAGCAAGTAGGCTGTAGAGCATTCTGTGACCCTGAAGAATGACACGATGTTCTTGATGAAGAGGGTGGATATTCCTGAAGGAGAAATAATGTTTTCTCAACAGCAGAAGCAGATATCAAGTTTATTCAATGACTGGGTCATGGAAAATCCTGTTCTCTACAGGT s panTro1.chrUn_random 63533874 545 + 240967748 catttttaatacatatatgtagctccaaagaaaaggcatatcttgtttactcttctaatcccgtagtattcgaaa--------------------------actttgtttttc---------caattctttgagataataaaCTG-GTT--------------AGGGTTAGTATTT------TGGTCCCCATTTGAATTTTCTAAGAGTTGCCTTTCTATAAGTGGCTAAGTGACTGTTACAAGGAGAAGAGCCCTCCTGAAGCGG-TGTGCCATGGGTTT-GAGGCCTCCCTGCAAAGTGCCTTCCTTGTGGCAGATCCCCATGTGTCTTTCTAAAAT-----------CAGCACAGTCAGACTGAGCGTGATTGGTAATTCTGCAGCT-----GTGACCCCTCTCGAATCTTCCTTGAATTCAGATGCAACTAATCTCCTCCTTGGTGGACACCAGGAAGTAGGCTGTAGAGCATTCTGTGACCCTGAAAAATGACACGATGTTCTTGATGAAGAGGGTGGATATTCCTGAAGGAGAAATAATGTTTTCTCAACAGCAGAAGCAGATATCAAGTTTATTCAATGACTGGGTCATGGAAAATCCTGTTCTCTACAGGT s mm5.chr4 45137922 579 + 154141344 TGTCTCTAGTAAGCAACTACCCTTCCATCAAAGGATTTTTACTTAGCCCATCTCCTATTACTGAATGGTTCTGGGTTATTTTGCTCTGTTTTTGTTGTTTTGTTTTGTTTTTCATTTATTATCAGTTTCTTATGATTACAAA---------------------AATAATTGTATTCACTAAATGATCTTCATTCAAAATTTTCTACATATACCTTTCTTGAAAC-ACCCTGTGCCTGTT--------AAGAGATCTTCTGCACTGG-------GTGGGCAT-GGAGTCTGAGTACAGGGAGCCTTCTGGATGCCAGGTGCCTCCATGTCCTCCTACAACGTCCTCCGACATGTCACAGTCGTCAAGAAAG-GCTTGG-GCACCTGAAACTTTCACATTACCTGCGTCTCATCTTTCCCGTACTCAGGTGCAGCTGGTTCAGTCTCTGGCAGCTACCAGGAAGCAGGCTGCAGAGCGTTCTGAGACTCAAAAGAATGTCAAGACACCCATGATGAAGAAGGTGCCATTACCTGAGGGGGAAACTATGACCCCTCGCCAGAGGAAGTGGGTGCGTAGCCTCCCCAACGACTGGGTCACGGAAAACCCAGTTCTTTATAGGT s rn3.chr5 62406141 570 + 173106704 TGTCTTTAGTAAGCACCTACCATTCCATCGAAGGAATTTTACTCAGCCAGTCTCCTTTTACTGAATGGTTCTGGTTTATTTT-------------------GCTTTGTTTTCACTTTTTGTTTTGTTTTTCAT--TTATCATCCG-TTTCTTATGGTTACAAAAATAATTGTGTACACCAAATGATCTTCATTCAGAGTTCTTTACGCACACCTTCCTTGAAAC-GCCCCATGCCTGTT--------AAGAGATCTTCTGCAGTGG-------GTGGGCAT-GGAGTCGGAGTACAAGGTGCCTTCCGAATGCCAGGTGCCTTCATGTCCTCCTACGTC--------ACATGTCACAGCCATCATGAAGA-GCTCGG-GCACCGGAAAAGTTCACAATCCCTGTGCTCCATCTTTCTTGCACTCAGGTGCAGCTGGTTCAGTCCCTGGCAGCCACCAGGAAGCGGGCTGCAGAGCATTCTGAGACTCCAAAGAACGTCAAGACACCCATGATGAAGAAGGTGCCGCTACCTGAGGGGGAGACTATGACCCCTCGGCAGAGGAAGTGGGTGCATAGCCTCCCCAACGACGGGGTCACGGAAAACCCAGTTCTCTATAGGT s canFam1.chr11 56028933 537 + 75769841 tgttcttaataaatacctaacattccattgaaaggacatggcaagtttactcaaccagtcccctaaaattgtaca--------------------------gccccatttttc---------taattccttgtgattatgaaagatgct--------------ggcataagcgtct------tGGCCCTCATTAAAATTTCTTAAGAGATATCTTTCTAGATG--GCTGAATATTTGGG--------GGTGGGGTGCCTGCATGGCAAATACCCTGGGGTTAAAGGCCTCCCTGCAAAGTGTCTTCCTTCTGGTAAGTTCCCCCATGACCTTATGAGAC----------------AGGCCAGGGTGCTGGGGAGTGG-ATGTTTTGGGATGTTTGGAGAATCCACTGGGATCTTTTGTGGATACAGGCACAGCTGGTCCGCTCTCTGGCGTCCACCAGGAAGCATGCTGTGGAGCGGTCCATGACCCCAAAAAATGGCAAGAAGCCCTTGATGAAGAGGATGGATATCCCTGAAGGGGAGATGTTGTCTGTTCGGCAGCAGAAGTGGGCACACAGCCTACCCAATGACTGGATCACAGAAAACCCTGTTCTCTACAGGT a score=13064.0 s hg17.chr17_random 2214457 88 + 2618010 TGATGCTGCATTCCA---GGCAAACCCACACCCTCGGTGTATGCCAGAGGCTTCAGAAACACAAA-GGAGCTCATACAAGATGAGTGCCAGG s panTro1.chrUn_random 63534419 88 + 240967748 TGATGCTACATTCCA---GGCAAACCCACACCCTCGGTGTATGCCAGAGGCTTCAGAAACACAAA-GGAACTCATACGAGATGAGTGCCAGG s mm5.chr4 45138501 66 + 154141344 AAGCCTTGC-TACCA---AG-----CCACATTGCAGGT-----CCCCAGTCTTCAAAGACTCAGA------------AAGATGTATGCCCAG s canFam1.chr11 56029470 92 + 75769841 AGGTCCTGTGGTCAACACTGCACCTCCACACACTGGAGGTGTGTCAGAGTCTTCAAAGACTCAGAAAGATCTCATGCAAGATGAGGGCCAAG a score=1594.0 s hg17.chr17_random 2214545 10 + 2618010 CAGCTATGAA s panTro1.chrUn_random 63534645 10 + 240967748 CAACTATGAA s mm5.chr4 45138567 6 + 154141344 ----GAGGAA s canFam1.chr11 56029562 10 + 75769841 TAGGAATGAA a score=1309.0 s hg17.chr17_random 2214555 6 + 2618010 AAGAGC s panTro1.chrUn_random 63534655 6 + 240967748 AAGAGC s mm5.chr4 45138573 6 + 154141344 CAGAGC a score=13700.0 s hg17.chr17_random 2214561 149 + 2618010 TGAGATTCTAAACCACAAATACAGACAACTACGAATATAGGTGAGACAAAAAACTGTAAACCTTCTTAAGGGTGTACAACATGTAACAACGGCTCCAATTAGCTCATGTTTAGATACCAAGGAAATAATAGCAGGAATGTTTTATGTTC s panTro1.chrUn_random 63534661 149 + 240967748 TGAGATTCTAAACCACAAATACAGACAACTACGAATATAGGTGAGACGAAAAACTGTAAACCTTCTTAAGGGTGTACAACATGTAACAACGGCTCCCATTAGCTCATGTTTAGATACCAAGGAAATAATAGCAGGAATGTTTTATGTTC a score=18125.0 s hg17.chr17_random 2214710 117 + 2618010 ACATTCCAAACAAAACCTATTATCATTCATCGTCAGTTCATTTAGTCCTGTTTTATTCATACTTGTTTTACTCTATCTT--GTAAGCACATATGCTTCTCTGCTAGAATTA-GAGAAATA s panTro1.chrUn_random 63534810 117 + 240967748 ACATTCCAAACAAAACCTATTATCATTCATCGTCAGTTCATTTAGTCCTGTTTTACTCATACTTGTTTTACTCTATCTT--GTAAGCACATATGCTTCTCTGCTACAATTA-GAGAAATA s canFam1.chrX 68576549 120 - 126913094 atattccaaacaaaagccataattatccttcatcagttcactcagtcccatggaattcatccttgctctgcttgatcttgggttggcagttttatgaacccACTGGAGTTCTGaaaaata a score=14063.0 s hg17.chr17_random 2214827 80 + 2618010 ACTTAGTCCACCGATAGTGTTTCAAAGTTATGTAAGTCATTCTATCAGAAGCCTGTTTATAGGAGTACTTGGTACAGTTA s panTro1.chrUn_random 63534927 80 + 240967748 ACTTAGTCCACTGATAGTGTTTCAAAGTTATGTAAGTCATTCTATCAGAAGCCTGTTTATAGGAGTACTTGGCACAGTTA s canFam1.chrX 68576977 80 - 126913094 ACTCAGTTCAGTGGTGTGGTCTCAAAATCATTTAAGCAATGCCATCAGAAGCCTGTGTCCCAGACTACATGGCACAGTCC a score=9435.0 s hg17.chr17_random 2214907 31 + 2618010 TTTCTGTGGGTCTCTGAGACATTCTTATTTT s panTro1.chrUn_random 63535007 31 + 240967748 TTTCTGTGGGTCTCTGAGGCATTCTTATTTT s mm5.chr15 60392446 31 + 104138553 TTTCTGTGGGTATCTGGGATAGTTCTATTTT s canFam1.chrX 68577057 31 - 126913094 TTTCCAGGGCTCGCTGAGACTATTAAATTTT a score=16035.0 s hg17.chr17_random 2214938 73 + 2618010 GTTGAAGACAAAGCCCTGTGGCCTGGAACTGATTTGCAAGCACTTTTAGAAAAATAGCCGAGTACAACCAAAA s panTro1.chrUn_random 63535038 73 + 240967748 GTTGAAGACAAAGCCCTGTGGCCTGGAACTGATTTGCAAGCACTTTTAGAGAAATAGCCGAATACAACCAAAA s mm5.chr15 60392477 67 + 104138553 GTTGCTGATAAAGCCCCCTGCC------CTAATTTGCTGGTGATAGTTAGGAGGTGTCAGAGTATAAACACAA s canFam1.chr7 61731491 68 + 83037113 GTTAAAGATAAAGCCCACTGGCCTGAAA-----TTGCAAGAGCCTTCAGGGAAGCAACAGAGCAAAACAAAAA a score=50447.0 s hg17.chr17_random 2215011 583 + 2618010 GTATATACTAATGAAAAAGTAAGCCATGCTTTCAGGTATGTAGTTAGTTGATACACTAAAATATTCTTTTATATAATGCAAACAGCACTAACACTTTAAAAAATAGAATTatattatgcacagtgagggcactggaaattttttaaaaaactttaatttctggattatttacgttaataacaattaggtaaaaaatttaacctaggggaagctaagcatatgtcttattATTTAATATAACAATATGCAAAATAGGCACGTTTCCATGTATGATAGTAGGACATAAAGTGTGCTGATACAAATATGAAACATAAAATATAAGTAAGAAATAGAAAAAATGACCTGTGTATGTTGATTATTTATATGTGT--TTATTACTATTTTTAGTAAATTAGATTATGTAAATATGTATTATATTTTAGGCAGCAGCAAATATTAACATATTTTTTAACTTGCAGCTTAGATAAGAATTGATGATTACAATTTATTAATATTAGCTACTTACGACAAACATTATGCAAAAAGAAATTCTAAAAATAATTTTGTATTAACTTTGAAAA-TTTTAAACTCTTTTCCACAGAAGTT s panTro1.chrUn_random 63535111 585 + 240967748 GTATACACTAATGAAAAAGTAAGCCATGCTTTCAGGTATGTAGTTAGTTGATACACTAAAATATTCTTTTATATAATGCAAACAGCACTAACACTTTAAAAAATAGAATTatattatgcacagtgagggcactggaaatttttttaaaaactttaatttctggattatttacgttaataacaattatgtaaata-tttaacctaggggaagctaagcatatgtcttattATTTAATATAACAAGATGCAAAATAGGCACATTTCCATATATAATAGTAGGACATAAAGTGTGCTGATACAAATATGAAACATAAAATATGAGTAAGAAATAGAAAAAATGACCTGAGTATGTTGATTATTTATATGTGTGTTTATTACTATTTTTAGTAACTTAGATTATGTAAATATGTATTATATTTTAGGCAGCAGCAAATATTAACATATTTTTTAAGGTGCAGCTTAGATAAGAATTGATGATTACAATTTATTAATATTAGCTACTTACGACAAACATTATGCAAAAAGAAATTCTAAAAATAATTTTGTATTAACTTTGAAAAATTTTAAACTCTTTTCTACAGAAGTT a score=8339.0 s hg17.chr17_random 2215594 50 + 2618010 TTTAAATTACAGACAATAAAATAGAAAGTTTATAAAAAAGAAAATGGTAC s panTro1.chrUn_random 63535696 50 + 240967748 TTTAAATTACAGACAATAAAATAGAAAGTTTATAAAAAAGAAAATGCTAC s rn3.chr1 71331636 50 + 268121971 TTTAAATAGCAAAAAATAGAAAAGATAGTTAAAAAAGAAAGAGAGAATAC a score=124993.0 s hg17.chr17_random 2215644 1399 + 2618010 TGAGAAATAGTTGGATTTTGATTCATTATTTTTTCTGAATATTAGTACTTGGAGCTTCACTGTTAATAATGCCAATAGGCTACACAGATTTTCTCTTCAGTAAAATGGCAAAACAGAAGACATTCAATTTTTAAATATAAGATGCAATTTT-ATTACCGTTTTTCTATATAAAAGACACAAAATTTAGACCAATAAAAACAGAATTTCTTCCATGAAATTtcaagagctgagctgagctgggaagagctaacctgcttaatatcagagtt-ttaaattaaagcaagaggcccacatcaaagaaatagttatgcctttttgtcttcctttctgtgattgtgttaaacaacaggcaacattagatcaagcaccgactcctcattgttccattttttcctcatggaaaagcaccaggaaagggtcagatggatcagcacaaacatggggcactgtctcactgccgaggtggcaccctcataaaaa-caggcccgcaattttgtggaaaagggggcaggagagcgtagaggagaatgtatgagcaagattaaagagaattgaatattaataggaatctataaaaattattatcaaagttccatttcttctccagaaacagggatctgaacaaaagtttctgaagaaggcctcaaccaaaaggccctcaggaaggtgcccctgaatctagatgcctggactgggaatgaaaatctacatgtgagcctcagtggccaagatttccggtattgtttatttcagccccttagagactgcaaagcgctgacATTTACATGCTTCTCCTAAATGCACATGTCAGCAGCAGTGTAACAACCAA-TGCTTTCAAAGATATAATGTGGGTATGAGAGTTTCTGGCAAAAATTTAGATAATCTTATCTTTTCAACCTCAAATAACAATATATGCTGAGAAACTTCAAAGGCATGTACCTCCACAAATAATTTTTCAGGAAAGAATAAAGAAGCACAGCTGTAGAATAAAAATTAGGCTGGAAGTTGATGCTACCTGTGGGAATTGCTAATAATGGAAGCACAGGTTGTTAGAATTTAACGTGTCTGATTGGTGAATATAATGTCACAGCAGCATAGATGCAGGAGTACTTGGATCTGACTATGCTATCTAAAGCTAGAATCCTTAAATTTTCAAAAGTTTAGAAAAATAGGTTAGTTAGTGGAGGTGGTATTTCTCCTCTTTGGTTGATTTGGGAATTAACACCAATCATCATATGAGTTTCTGGTTTATATGTACACTATGTGTTTTACTCAGGACAATTTAGGTAAATATATAGACTTAATCATTTTCAGTTGTCTGTAAAGGGTGCATTATTAACATTACAGATAACTTTTCACTGGAATAAAATACCTCGACCCAGAATCTTCAATGGCCCCA s panTro1.chrUn_random 63535746 1403 + 240967748 TGAGAAATAGTTGGATTTTGATTCATTATTTTTTCTGAATATTAGTACTTGGAGCTTCACTGTTAATAATGCCAATAGGCTACACAAGTTTTCTCTTCAGTAAAATGGCAAAACAGAAGGCATTCAATTTTTAAATATACGATGCAATTTTTATTACCGTTTTTCTATATAAAAGACACAAAATTTAGACCAATAAAAACAGAATTTCTTCCATGAAATTtcaagagctgagctgagctggggagagctaacctgcttaatatcagacttcttaaattaaagcaagagacccacatcaaagaaatagttatgcctttttgtcttcctttctgtgattgtgttaaacaacaggcaacattagatcaagcaccaactcttcattgttccattttttcctcatggaaaagcaccaggaaagggtcagatggatcagcacaaacatggggcactgtctcactgccgaggtggcaccctcataaaaaacaggcccacaattttgtggaaaagggggcaggagagcgtagaggagactgtatgagcaagattaaagagaattgaatattaataggaatgtataaaaattattatcaaagttctatttcttctccagaaacagggatccgaacaaaagtttctgaagaaggcctcaaccaaaagcccctcaggaaggtgcccctcaatctagatgcctggactgggaatgaaaatctacatgtgagcctcagtggccaagatttccggtattgtttatttcaacccctcagagactgcaaagcactgacATTTACATGCTTCTCCTACATGCACATGTCAGGAGCAGTGTGACAACCAAATGCTTTCAAAGATATAATGTGGGTATCAGAGTTTCTGGCAAAAATTTAGATAATCTTATCTTTTCAACCTCAAATAACAATATATGCTGAGAAACTTCAAAGGCATGTACCTCCACAAATAATTTTTCAGGAAAGAATAAAGAAGCACAGCTGTAGAATAAAAATTAGGCTGGAAGTTGATGCTACCTGTGGGAATTGCTAATAATGGAAGCACAGGTTGTTAGAATTTAACATGTCTGATTGGTGAATATAATGTAACAGCAGCATAGATGCAGGAGTACTTGGATCTGACTATGCTATCTAAAGCTAGAATCCTTACATTTTCAAAAGTTTAGAAAAATAGGTTAGTTAGTGGAGGCGGTATTTCTCCTCTTTGGTTGATTTGGGAATTAACACCAATCATCATATGAGTTTCTGGTTCATATGTACACTATGTGTTTTACTCAGGACAATTTAGGTAAACATATAGACTTAATCATTTTCAGGTGTCTGTAAAGGGTGCATTATTAACATTACAGATAACTTTTCACTGCAGTAAAATACCTCGACCCAGAATCTTCAATGGCCCCA a score=22541.0 s hg17.chr17_random 2217043 240 + 2618010 TCAATTGAGGTCAGTCATTTATAATAAAAT-----GAAGTCTACTATTCTTTTTAAAATATACAAAGTAAAAGTCATCAAGATCAAAGT-TATTAAGAAACAAAATTATAAGAAAAACACAGCTGTAC----CATTACATCTTAATAAATCCCAAAATTGTATATATACTGTAGAA-ATAATATAAGTAGTTATAATGTTTAAATATATTAGAGGAA-----AAGTTTAAAAGTAAGATCAAAATAAGTTATATTA- s panTro1.chrUn_random 63537149 240 + 240967748 TCAATTGAGGTCAGTCATTTATAATAAAAT-----GAAGTCTACTATTCTTTTTAAAATATACAAAGTAAAAGTCATCAAGATCAAAGT-TATTAAGAAACAAAATTATAAGAAAAACACAGCTGTAC----CATTACATCTTAATAAATCCCAAAATTGTATATATACTGTAGAA-ATAATATAAGTAGTTATAATGTTTAAATATATTAGAGGAA-----AAGTTTAAAAGTAAGATCAAAATAAGGTATATTA- s danRer1.chrNA 224601138 252 + 390413307 TAAATTAAAAATGACAATTTACTGCAAAATTTACAGTAAGTTTTTGGCCATTTGTTGCTAGAAAGACTGTAAGTTTACAAACACACTGTAAATTAATAATTACAATTGTAATGTAAAAAACGCATTACCTTTCATTACATTGCTGTAAAT-TAAAAATTACa-atttactgtaaaatttactgtaaaTTACTGGCAATTTTGG--TTGCCAGAAAAAACTGTAAATTTACAAGCACACTGTAAATAAA-TAAACTAA a score=7593.0 s hg17.chr17_random 2217283 96 + 2618010 TCaaaataattaggtaaaaattttaaatttaaaggatagaatgcatagaaaaattacataattgaaaaagaaattatg-aattagaagatatgatga s panTro1.chrUn_random 63537389 96 + 240967748 TCAAAATAATTAGGTAAAAATTT-AAATTTAAAGGATAGAATACATAGAAAAATTACATATTTGAAAAAGAAATTATGCAATTAGAAGATATGATGA a score=17588.0 s hg17.chr17_random 2217379 175 + 2618010 agtga-atatttagaagtcccaatagggata-aaacaaataaacaat-atgaaaaattaa-aatacataaaAATCTAAAATAAGTCATGTTGTTTAAGTGCAAGTTCGAATACATAAAATGGAGTGAATGTCAA-ATAGGGaataaaaatatataattattaaaata-attaattat----------aata s panTro1.chrUn_random 63537485 176 + 240967748 AGTGA-ATATTTAGAAGTCCCAATAGGGATA-AAACAAATAAACAAT-ATGAAAAATTAA-AATACATAAAAATGTAGAATAAGTTATGTTGTTTAAGTGCAAGTTCGAATAAATAAAATGGAGTGAATGTCAAGATAGGGaataaaaatatataattattaaaata-attaattat----------aata s canFam1.chr20 54069237 177 - 61172541 AGTGAGACATTTTTAAATGCTTAAAGACATACAAACATACAAAaaataatgaaatatgaagaaaatacataattttaaaatactaccaggtgtattaa---------aaaaacaacaaatgaaactaactctta-----ggaacaaaaaaataaaataaatataatatactagtaatggatatgtgaaata a score=2567.0 s hg17.chr17_random 2217554 94 + 2618010 GC---TTAAAGGCATTCTGAT---CAAAAGAAAAACAATAGT------TAAAAGCATAAT----ACCATAATAGAGAAAATCACG-TAAAGCTATCTAAGATAAAATTCAA- s panTro1.chrUn_random 63537661 94 + 240967748 GC---TTAAAGACATTCTGAT---CAAAAGAAAAACAATAGT------TAAAAGCATAAT----ACCATAATAGAGAAAATCACG-TAAAGCTATCTAAGATAAAATTCAA- s canFam1.chr20 54069414 77 - 61172541 gctgtttaaacaca----gtt---gaagagagaattagt-----------gaactagaat----attagactaaag------------gggttattcaggatgtagttcat- s danRer1.chrNA 224601464 109 + 390413307 ---GTTTATGGTAATTTTGGTTTCCAAACGTAATTTACAAGCACACTGTAAAATAATGATTGCAAATGTAATGTAAAAAACCACATTACAATGCTCTAAATTACAAGTTATA a score=-4986.0 s hg17.chr17_random 2217648 96 + 2618010 ATTAATTATAAAGCAATGAAAAGACACATATTT----------CTCAATATGTGAAT------------------AAGAT---CA-AGAATCCAA-----TAGGTT---ATGGTTTTCAAAG--------------TTCTGAGGGAAAAA s panTro1.chrUn_random 63537755 96 + 240967748 ATTAATTATAAATCAATGAAAAGAAACACATTT----------CTCAATATGTGAAT------------------AAGAT---CA-AGAATCCAA-----TGGGTT---ATGGTTTTCAAAG--------------TTCTGAGGGAAAAA s rn3.chr4 101179233 123 - 187371129 ATTAATTATAAATAAACAGGGACATG-ACATTTTCATTAAGTACTCATTAAATAACT---------------GTAAAAAT---GA-AAAAACTAA-------AGTTCACATTATTTTTATGGACCCAGATAAATTATTGTTAGGGGAAAA s canFam1.chr20 54069491 100 - 61172541 -agaaatagaggtggaaaatatgaaaaagatta----------atgaatagagaaa-------------------aaaat---aataaggtttaacacactgaatt---ggaacttcacaaa--------------tagtgaggaaaagg s danRer1.chrNA 224601573 109 + 390413307 ATTTACTGTAAA------ATTTACAGTAGGTTT----------CTGGCAATGTGTGTTGCCAGAAGGACTGTAAAGAAATTTACA-AGCATACTG-----TAAATT---AATAATT--ACAG--------------TTGTAATATAAAAA a score=305.0 s hg17.chr17_random 2217744 3 + 2618010 CAT s canFam1.chr20 54069595 3 - 61172541 caa s danRer1.chrNA 224601682 3 + 390413307 CAC a score=815.0 s hg17.chr17_random 2217744 3 + 2618010 CAT s panTro1.chrUn_random 63537851 3 + 240967748 CAT s canFam1.chr20 54069595 3 - 61172541 caa s danRer1.chrNA 224601682 3 + 390413307 CAC a score=-24937.0 s hg17.chr17_random 2217747 184 + 2618010 ------GTAAATTTAAAATTACATATATTTGAAAA-------------------GTTATTTTCAG----------------------------GTTTAAGGACAAAATGTAACTTAATACACAAA----TACAATGTAA---GTATAATTACGTCAGTGA---------AATGCATTTAAAATTTGCTGAAAA----------TTTAGTTTATAAA------------------GAAAAACACTCTTCCTGAGAACAAACATT--------GAGATAAAATAAATGTGC s panTro1.chrUn_random 63537854 187 + 240967748 ------GTAAATTTAAAATTACATATATTTGAAAA-------------------GTTATTTTCAG----------------------------GTTTAAGGACAAAATGTAACTTAATACACAAA----TACAATGTAAACAGTATAATTACGTCAGTGA---------AATGCATTTAAAATTTGCTGAAAA----------TTTAGTTTATGAA------------------GAAAAATACTCTTCCTGAGAACAAACATT--------GAGATAAAATAAATGCGC s mm5.chr6 66863706 196 + 149721531 ------GTAAATTAAA----ATATTTTTTTAAAAA-------------------GTCACTATCAGCAAGGATCATCTTTTATATAACATCAGAATTAAGGGAACATTTATGATATAGAGCAAAAA----GGAAGGACTA---AGAGAATTCCTGTGGAGA---------TATGAATTTATGATGTATAATGAA----------TTT--------AA------------------GAACCATATACTTCTTGGCAGCAAAAAT------------GTCAAAGGAATGAAT s rn3.chr4 101179356 183 - 187371129 ------ATAAACCTAAGATAAAATATTT-----AA-------------------ACTATTTTTTG----------------------------AT-----GAGTAAAAGTAAATTAAAATCAAAA----GAAAGCTTAA---AATCAATATCAACAGGGATTTATTTTGATTAAGCTCAGCATCAAATAAATA----------TTTAATATTTAAA------------------GTAAAAAA--------GAGAAAGAGAATTCATGTGGAAATATCAAATTATTGTGT s canFam1.chr20 54069598 204 - 61172541 --------gtatttgaggtgataaagatataaaa-----------------------cttctcaggaAGTAC---------------------ATTGATTGAGCCTTGATAA---GACACACATA-----ACAATATGA---ATGTAGTAAGGATATCCA---------CATGTAGACAAATTTTAGTGAAAATATGGGATACTTTAATACAAGAAATTAAAACCACCAAGAGTGGAAGGAATTTTCCTTAAAAGATA-------------AAGATAAAGAAACTATTT s danRer1.chrNA 224601685 197 + 390413307 ATTAATTTAAATTGAAAAATGCAATTTACTGTAAATATTCACAGTAACCTACTGGCAATTTTC------------------------------GTTGCCATTAAAACTGTAAATTTGCAAGAAAACTGTAAATAAATAA---ATACAATTGCAATATACA---------AAAATACATCACAT-TACTGTAAA-----------TT----------------------------GACAGTAAATCCTTTAGTGTACATATATT--------CAAAT--AATGAACGCTG a score=-3887.0 s hg17.chr17_random 2217931 30 + 2618010 AAA--CAT-------CTAAATAGAT-----------GGAAACT---ATATTAA s panTro1.chrUn_random 63538041 30 + 240967748 AAA--CAT-------CTAAATAGAT-----------GGAAACT---ATATTAA s mm5.chr6 66863902 37 + 149721531 AAG--TATAATACTACAAATTCTAT-----------TTAAACC---ATATGAA s rn3.chr4 101179539 46 - 187371129 AAAATTAT-------CTTAAGAACTCTCCGCTACTATGCAACTGAAATGTCAA s danRer1.chrNA 224601882 33 + 390413307 ----CCATAG-----TTGAACACAT--------ATAGAGAAGT---ATAGTTA a score=-358.0 s hg17.chr17_random 2217961 9 + 2618010 CACTGTGTG-- s panTro1.chrUn_random 63538071 9 + 240967748 CACTGTGTG-- s rn3.chr4 101179587 8 - 187371129 CAATGTAT--- s danRer1.chrNA 224601915 9 + 390413307 --ATATATTTG a score=-6382.0 s hg17.chr17_random 2217970 133 + 2618010 AAATTATA----CACA-ATATGTGATATATCCATGTGAAGCA--------TATTTATGGAAGCATAAAAGAAAA--TGTTATCCCAAG---AGTTATATTAAA-----------TAAAAGAGTAAATTTGGTAATAGATGAGTAACTTATTTTATATCAGTA----- s panTro1.chrUn_random 63538080 133 + 240967748 AAATTATA----CACA-ATATGTGATATATCCATTTGTAGCA--------TATTTATGGAAGCATAAAAGAAAA--TGTTATCCCAAG---GGTTATATTAAA-----------TAAAAGAGTAAATTTGGTAATAGATGAGTAACTTATTTTATATCAGTA----- s rn3.chr4 101179595 133 - 187371129 AATTTGTAATAGCACA-A-ATTTTATTTAATCATATGTTGAATCTTGCTTTACTACTTGAACCATTAAAG-----------TTTAAAG---AACTGTATTTGG------------GGGATAGGGAGCTGGGGATGCAAAGGATAATTCTTTATAC-TCAGTG----- s canFam1.chr20 54070083 136 - 61172541 AAATTATC----TACA-ATTTACTTTTTATCCATATATATTA--------AGATTACCATGTTACAACAGAAAATTTATAATCCCATGTTTAATCAATTTTTT-----------TCAGAGAGAAAATTCTGTGAAACATAAG--ATTGTTCTAATGAGAGTG----- s danRer1.chrNA 224601924 138 + 390413307 GACATATA----GGTATACTTGTAAT---TCCAATGGTTGAA--------AAAATAT----TCATGTAAACAGA--CATTATTGCTAT---ATTTGTTTTTTACATATTTTATATACATGTGAAAATT-----AAACATGTTGTATTTCGTATATATGAAGTTTGCA a score=1744.0 s hg17.chr17_random 2218103 6 + 2618010 TAATGT s panTro1.chrUn_random 63538213 6 + 240967748 TAATGT s rn3.chr4 101179840 6 - 187371129 TAATAG s canFam1.chr20 54070220 6 - 61172541 AAACAT s danRer1.chrNA 224602062 6 + 390413307 TAACTT a score=7730.0 s hg17.chr17_random 2218109 49 + 2618010 ATATTTAAGAGATTTTTGTCACTAAATTATTAAATATTGAGTGCAAATC s panTro1.chrUn_random 63538219 49 + 240967748 GTATTTAAGAGATTTTTGTCACTAAATTATTAAATGTTGAGTGCAAATC s rn3.chr4 100619026 38 - 187371129 ATATTTAAAAAAATCTTGTGGC-----------ACTTTGAATGCATGTT s canFam1.chr20 54070228 49 - 61172541 TTTCTTAAGATATTTCTATTGCTGTTTTGTTAAACCCTGACCTTTTCTC s danRer1.chrNA 224602068 48 + 390413307 ATATATGGGATATGTTTGCCAATGAATGATTGCACCTTGAGAAAAATT- a score=-1506.0 s hg17.chr17_random 2218158 10 + 2618010 ----CTATATACTG s canFam1.chr20 54070279 8 - 61172541 ----CCACATGG-- s danRer1.chrNA 224602116 10 + 390413307 TGAGATTCAT---- a score=-1509.0 s hg17.chr17_random 2218158 10 + 2618010 ----CTATATACTG s panTro1.chrUn_random 63538268 10 + 240967748 ----CTATATACTG s canFam1.chr20 54070279 8 - 61172541 ----CCACATGG-- s danRer1.chrNA 224602116 10 + 390413307 TGAGATTCAT---- a score=1276.0 s hg17.chr17_random 2218168 12 + 2618010 TTTGAACAA-TAC s panTro1.chrUn_random 63538278 12 + 240967748 TTTGAACAA-TAC s mm5.chr6 92598735 12 - 149721531 TTTGAGCAA-GTT s rn3.chr4 100619064 12 - 187371129 TTCCAGCAT-AAT s canFam1.chr20 54070287 13 - 61172541 TTTGCATAATTTT s danRer1.chrNA 224602126 12 + 390413307 GATGAACAC-CAC a score=113767.0 s hg17.chr17_random 2218180 278 + 2618010 TATTATTTTCTCAGCAAA---GATCAGCACTGAAAGACTGACTCCTGCATAGCCACTGACCAC-AGCTTCTGGAACAACAAAAGCATTGAATCATTAATCCTGAATGTGGCCAATGAGCA-TG-AGATGAGGAAATCTACCCAGTTCATGACCAC-AAAGCAACTCACCAGCAGCTGGATGGCCTGGGTAG-CTTATTTCTCTGGAGAGACTCTTAGACAGTGACTCCTGATACAGAGATGCTGAGACTGCATTTTGTGCCTGGAGGAGAGAATTACCACGTGTGA s panTro1.chrUn_random 63538290 281 + 240967748 TATTATTTTCTCAGCAAA---GATCAGCACTGAAAGACTGACTCCTGCATAGCCACTGACCAC-AGCTTCTGGAACAACAAAAGCATTGAATCATTAATCCTGAATGTGGCCAATGAGCAGTGCAGATGAGGAAATCTACCCAGTTCATGACCACCAAAGCAACTCACCAGCAGCTGGACGGCCTAGGTAG-TTTATTTCTCTGGAGAGACTCTTAGACAGTGACTCCTGATACAGAGATGCTGAGACTGCATTTTGTGCCTGGAGGAGAGAATTACCACGTGTGA s mm5.chr6 92598747 279 - 149721531 AATTATTCTGTTATCAGAACTGATTTGTACCAATGGAGTAATTGTAGGATAGGCATTCATCACAAACTTCTGAACAGTCAGGATGACTGGGTCATACATCCATAACAGGACTGAGGTGGA-TG-AGATGATGAAGTCCACCCAGTACATGACCAC-AAAGAAAACCACCAGCAGCAAGATGGTCTGGGTGG-CCTTTTTCTCAGGGGATGCTCTCAG---GTGTCTGATGCTATGAAGATGCTTGCACTGCCTCTGATGCCTGAACAAGATTATCACCATGTATGT s rn3.chr4 100619076 279 - 187371129 TATTATTCTGTTATCAGAACTGATTTGTATCAAAGGAGTAATTGTGGGATAGGCATACATCACAAACTTCTGAACAGTCAGGACAACTGGGTCATACATCCATAACAGGACTGAGGAGGA-TG-AGATGATGAAGTCCACCCAGTATATGACCAC-AAAGCAAACCACCAGCAGCAAGATGGTCTGCGTGG-CTCTTTTCTCAGGGGATGCTCTCAA---GTGGCTGGTGCTATGAAGATGCTTACATTGCCTGTGATGCCTAAACAAGATAATCACCATGTACAT s canFam1.chr20 54070300 277 - 61172541 TATTATTTGTTTCTCAGCACTGATTAGCACCAAGGG----ACTGTGTCATGGCCATTGACCATGAGCATCCGGATACATACCAGGATTGGGTCATTTGTCCATGTCATGCCTGTGGAAAA-TG-AAATGATGAAGTCCACACAATATATGATCAC-AAAACAACTTAGCAGCAGCAGAATTGTCTGAGTAGCCCTTTTTTTCCGGGGAGCTTTTTGGAGGGAGACTCTTGCTGTGAAGATGCTCTGACTGCTGCTTATGTCTGCACAAGAGAATTATTGTGTAA-- a score=36945.0 s hg17.chr17_random 2218458 98 + 2618010 TTGAGAGCATCAGTGTTCCTCCAGAAGAGACATTTCTAAATGCTGCTAGTGTGAAAAAGGAGCTTATGTTCACTTAGCCCCTGGGGGAAGAAAAACAG s panTro1.chrUn_random 177444818 98 - 240967748 TTGAGAGCATCAGTGTTCCTCTAGAAGAGACATTTCTAAATGCTGCTAGTGTGAAAAATGAGCTTATGTTCACGTAGCCCTTGGGGGAAGAAAAACAG s mm5.chr6 92599028 98 - 149721531 TTGTAATCAGCATGACTCCTACAAGAAACACATCTCTAGAGGTTGTTACTGTTAAAATCAATCCCCTGATAATATAGTTCATTGGGAAGAGAGAACAG s rn3.chr4 100619357 98 - 187371129 TTGTTGTCAGCATGACTCCTACAAGAAAAACATCTCTGGAGACTGACACTGTTAAAATCAAGCCCTTGATGATGTAGTTCTTGGGGAAGAGTGAACAG s canFam1.chr20 54070581 98 - 61172541 CTGACAGGACCATAAGACCCATGAAGAAGACAGCTCTAAATGCCTTCAGTGTGAAAAAGAAGCCCCTGTGGATATAGATTATGGGCAAAAAGGAACAG a score=91.0 s hg17.chr17_random 2218556 1 + 2618010 T s canFam1.chr20 54070679 1 - 61172541 T a score=546.0 s hg17.chr17_random 2218556 2 + 2618010 TA s panTro1.chrUn_random 177444916 2 - 240967748 TA s mm5.chr6 92599126 2 - 149721531 TA a score=1019.0 s hg17.chr17_random 2218558 11 + 2618010 ATATTTAACAG s panTro1.chrUn_random 177444918 11 - 240967748 ATATTTAACAG a score=22923.0 s hg17.chr17_random 2218569 136 + 2618010 TACATTTTAAGAACCAATAA-AATTATTTTTAAAATCAAAGCAATTTTAAAGCTTTTACTTCATTAGACTCCCTGGCAA-GAAAGTCCTGGGAAGACAGAAAGTTTGGAGGATGTCAGAGGGAAGTTTGGGAAAAGTA s panTro1.chrUn_random 177444929 136 - 240967748 CACATTTTAAGAACCAATAA-AATTATTTTTAAAATCAAAGCAATTTTAAAGGTTTTACTTCATTAGACTCCCTGGCAA-GAAAGTCCTGGGAAGACAGAAAGTTTGGAGGATGTCAGAGGGAAGTTTGGGAAAAGTA s canFam1.chr11 19741675 134 - 75769841 TATGTTTTAAGAACCAATAAGAATTATTTTTAAAATGAAAGCAATTTCAAAGC-CTTATTTCATTGGATTCCCGGGTGACAAAAGCCTTCAGCGGGAGGAAAGTTTGGGGAG---CAGAGAGAAGAGGGTCAGACCTA a score=1246.0 s hg17.chr17_random 2218705 13 + 2618010 GAGGAATGTACGG s panTro1.chrUn_random 177445065 13 - 240967748 GAGGAATGTACGG a score=45526.0 s hg17.chr17_random 2218718 364 + 2618010 CCCACTCAG--CCTGGGTCACCTTCGCTACTGACCTCATCTTG---------TCTCGACTGGGTGCTCCTTTCAGGAAGCTGGTGTCTGGAAAACT--TCTCAATTTTAGTATCAATTATTATT--CAGAGGTTGAAAGGCAAGC-CTCCACCTAAAGTGCCAGT--------CCTGGGGCCTTGGTGAGACC-----------CTCTGCTGGGGAGAAACTCCACTTCACC---------------------------------TGGGGGTTCTTA-TTTATACAAAATGGGGAAATGAGGGGGCAGCCAAGCAGCAGAAAACCAAATCATAAGCAAGAACCAAACTCTTGGGGAGTTTGATTCTTTCTGCTACATAGTGCACAAGTTCTGGAGAGACTATAGGGGTGAAGAATAATAAAAGAtt-ttatttt s panTro1.chrUn_random 177445078 364 - 240967748 CCCACTCAG--CCTGGGTCACCTTCGCTACTGACCTCATCTTG---------TCTCGACTGGGTGCTCCTTTCAGGAAGCTGGTGTCTGGAAAACT--TCTCAATTTTAGTATCAATTATTATT--CAGAGGTTGAAAGGCAAGC-CTCCACCTAAAGTGCCAGT--------CCTGGGGCCTTGGTGAGACC-----------CTCTGCTGGGGAGAAACTCCACTTCACC---------------------------------TGGGGGTTCTTA-TTTATACAAAATGGGGAAATGAGGGGGCAGCCAAGCAGCAGAAAACCAAATCATAAGCAAGAACCAAACTCTTGGGGAGTTTGATTCTTTCTGCTACATAGTGCACAAGTTCTGGAGAGATTATAGGGTTGAAGaataataaaatatt-ttatttt s canFam1.chr11 19741840 422 - 75769841 CCCGCTGGGAACCTGGGTCACCTTCCCCACTGAGGACATCTTGACCTTGGCTGCTGGCCTGGACACTCCTGTTGGGAATTCATTGTCCAGGAATCCTGTCTGGGGTTTGATCTCTATTCTGACCCACAGAGGTTGAAAAACTGACACCCCAACCCCAGGACAAGTCCTCTCTGCCTAGGACC------AGACCCATCTAGGCAACCCGGCTGGGGCATGAC-CCACCCCACTGTCTGAGTGAAAGCATGGGGTTCCGCTCAGGCATCGGGGTTTTCATTTTAAACAAAAAGAGG----GGAGGGGCAAAGAAGCCAAAAGGAAACAAACCTCAGGCAAGAGCAGAATTC-AGAGAAGGCAGGCTCTTCCAGCCCCGCAGGGTTCAAATCCCAGAGGGACTTTGGGGGCAGAGATGAATGACAAATTATTGTTTT a score=3835.0 s hg17.chr17_random 2219082 45 + 2618010 tgaaacatcttgcatagttgccctggttggagtgcagcagcacga s panTro1.chrUn_random 177445442 45 - 240967748 tGAAACATCTTGCATGGTTGCCCTGGTTGGATTGCAGCAGCACAA a score=23543.0 s hg17.chr17_random 2219127 257 + 2618010 tcatagctccctgtagcctagaactcctggctcaagtgatcctctgcctcaatgtccagcatagctgagacaacagtttggaactatcacacctggctaaatgtttttaatgcttcaagttttttgtataaatggggtctcactatgttgacaaggctggtatcaaattcctggcctcaagcaattctatctcctcagccaatcaatatgccaggaatacaggcatgagacaccgtgcctggccAGCGCCTTTATAA s panTro1.chrUn_random 63539242 257 + 240967748 tcatagctccctgtagcctagaactcctggctcaagtgatcctctgcctcaatgtccagcatagctgaggcaacagtttggaactatcacagctggctaaatttttttaatgcttcaagttttttgtataaatggggtctcgctatgttgacaaggctggtatcaaattcctggcctcaagcaattctatctcctcagcccatcaatatgccaggaatacaggcatgagacaccgtgcctggccAGCGCCTTTATAA a score=32374.0 s hg17.chr17_random 2219384 200 + 2618010 TGTTTTATTCTCCCAAGTTCTTCTCAAAAAAGTCAACATCCACCAAGTATCAGCTGAGATTTGAACTT-------------CAACCCTGGGCTGAACTCAGTGGC-AGGACTCT----------------CCATTC----CCAACAAGGGACAAATGGAGAAATAAATGGTGAGAGGGAGGAGCTTGATTCTGCCCATGCTAATTGGACACCTATTGTGTGCTAGGAAGACACA s panTro1.chrUn_random 63539499 200 + 240967748 TGTTTTATTCTCCCAAGTTCTTCTCAAAAAAGTCAACATCCACCAAGTATCAGCTGAGATTTGAACTT-------------CAACCCTGGGCTGAACTCAGTTGC-AGGACTCT----------------CCTTTC----CCAACAAGGGACAAATGGAGAAATAAATGGTGAGAGGGAGGAGCTTGATTCTGCCCATGCTAATTGGACACTTATTGTGTGCTAGGAAGACACA s canFam1.chr11 19742263 234 - 75769841 TGCTTCACTGTCCCAAGCTTTCCTGGGAAAAGTCAGCATGCCCAAGGTGTCCGCTTGGATTTCAACCTGGCCTTGAACTCCCAACCTGGAGCTCAACGCGGTTACAAGGACCCTTGCCGGGCCCCCTCCGCCACTCCCCGCCAAGAGTGGACACAGAGAGGGGGCACCGGAGGGAGGGCGCAGCCTGACTCTGGCCATGCTAATTAGGCACCTACTGTATGCTGAGAAGACCCA a score=5823.0 s hg17.chr17_random 2219584 63 + 2618010 CAGAGGTCAATCCAAATTCCAGCTCCAGCCACAGCAGGACAGCCATGGTGTAGAAGGCCTAGC s panTro1.chrUn_random 63539699 63 + 240967748 CAGAGGTCAATCCAAATTCCAGCTCCAGCCACAGCAGGACACCCATGGTGTAGAAGGCCTAGC a score=6371.0 s hg17.chr17_random 2219647 56 + 2618010 CCAGAGGA------GGGAGCCTTAGCAAGCGGAGCACCCCTCCATGGAGTATTGACATTCTG s panTro1.chrUn_random 63539762 56 + 240967748 CCAGAGGA------GGGAGCCTTAGCAAGAGGAGCACCCCTCCATGGAGTATTGACACTCTG s canFam1.chr11 19743042 47 - 75769841 CCAGGGGACACCTCAGGAGCCT---CCAGAGCAGCACGC------------TTAATGTTCTG a score=0.0 s hg17.chr17_random 2219703 18 + 2618010 TTACTTCAGTTGTACTGA a score=1179.0 s hg17.chr17_random 2219703 14 + 2618010 TTACTTCAGTTGTA s panTro1.chrUn_random 63539818 14 + 240967748 TTACTTCAGTTATA a score=640.0 s hg17.chr17_random 2219717 4 + 2618010 CTGA s panTro1.chrUn_random 63539832 4 + 240967748 CTGA s mm5.chr4 109006105 4 - 154141344 CCAA a score=14264.0 s hg17.chr17_random 2219721 76 + 2618010 AAACTAGTAGAAGGTAAGAGA-----TGTTGTACTCAACCATTATGAGCAAGAAAATCCATTCAATCTTCTTTAATTTGGT s panTro1.chrUn_random 63539836 76 + 240967748 AAACTAGTAGAAGGTATGAGA-----TGTGATACTCACCCATTATGAGCAAGAAAATCCATTCAATCTTCTTTAATTTGGT s mm5.chr4 109006109 80 - 154141344 AAGCTAGTAGGAGGTTAGAAAGCCTGTGCAGATCTTGACTGTTGTGGTCAAG-GAATCCAGTCTCTCATTGTTGCACGGGT s canFam1.chr11 19743089 75 - 75769841 AAACTGAAAGAGAACAGGAGC-----TGTAACTCCCAGCCATGGTTGTCAAGAAAATCCATCCCATCTGCTTTGC-TAGGT a score=19478.0 s hg17.chr17_random 2219797 110 + 2618010 TAAAATTAGCCTTTATTAAAAGGC---AGCACAGAGTAATGCTTGCCTGTGAGAATTT-AAAAACATCATAGCAAACCACTCCGTTCTC--AGTTTA-------AGAGGGAAGGCGAAAGGCT s panTro1.chrUn_random 177445487 110 - 240967748 TAAAATTAGCCTTTATTAAAAGGC---AGCACAGAGTAATGCTTGCCTGTGAGAATTT-AAAAACATCATAGCAAACCACTCCTTTCTC--AGTTTA-------AGAGGGAAGGTGAAAGGCT s mm5.chr4 109006189 109 - 154141344 TAAAATCAACCTGTGCAGGCAGGC---AGCACAAAGTGGCCCTTGCCTGTAAGAATCTGAAAGACACTGAAAGAAATAAGATCTTTCCC--ACTTTA---------AAGTAAGTTGGAAGGCT s canFam1.chr11 19743164 117 - 75769841 TAAAACCAACCTGTGCTGTCAACTATGAGCACAG-----TGCTTGGCTGTAAGAAGCT-GAATGCATCTCTAAAAAAGACCATCTTCTTGAAGATGAAGTGCTCAGAATTCAGGCCTCAGGCT a score=95456.0 s hg17.chr17_random 2219907 789 + 2618010 TGTGTGGGAGAATAAGAAAAAAACATATTTATGTAATACTTTGAGTTTC--TATTGCTCCTAACCACC-ATTGCTACATAATTATTCCAAAATATAGCTCTTCTTTATCCATCCTACTGTTCAAAAGTACCTCACTGATTCTGTAACCCCCAACTAATCCACCCTATAGTCCCTAGATGACCAGAGATGCCTATTATCCTCTGCTTTTTACTGTCACTCTCCCCAGTCCAGCAAACTCATTCCTCTTCCTGCATAAGCC------TCCTGTGTTTCTGCCCTTTTTTATCTGCACCCTCTGCTGAGATTCTTTTGTCTTCACCCATCCCAAAGCCATCCATACTTCCACTACTTGACTAGGGGTAATTATCTCATTCACCCAGCCTAATTTTTAACCTTACCTTCCTG--------------------CT-CCCACCCTCTCTTCACTCTGAACAAGACTTTACTA-GGTTGTTGTTATGTTCTGGGGTTCGGAGAATCTGACTAGTGTGAGTTTCCCAAGGTAAAGGTAATGCCTTAATAATTTTCA-----CTTTAATTGCTCTTTGCGCAGTGTTTTGCACAAAATTTA-ACACAATAATTGCTCCCGGAGTAAATGCATAAATCTTTGTAATATCCT-ATTTGGCTCCCTTAGAGTCTGAAACTTTTCCCCTTCAACCATCCAGAGTCCTGTCTAACCAAA---GTGAAAATGGGG------------------------------------------------------------AACTCCCTCTTTCTGGCTGGCATCACTGCTGAGAACGGAAATAAATGCTGTCTATGCCAACTCCCTAGAACAAGTATAGGTTTCATCTAGACTAGTTTTCAAAATGAG-GA s panTro1.chrUn_random 177445597 810 - 240967748 TGTGTGGGAGAATAAGAAAAAAACATATTTATGTAACACTTTGAGTTTC--TATTGCTCCTAACCACC-ATTGCTACATAATTATTCCAAAATATACCTCTTCTTTATCCATCCTACTGTTCAAAAGTACCTCACTGATTCTGTAACCCCCAACTAATCCACCCTATAGTCCCTAGATGACCAGAGATGCCTACTATCCTCTGCTTTTTACTGTCACTCTCCCCAGTCCAGCAAACTCATACCTCTTTCTGCATAAGCC------TCCTGGGTTTCTGCCCTTTATTATCTGCACTCTCTGCTGAGATTCTTTTGTCTTCACCCATCCCAAAGACATCCATACTTCCACTGCATTACTAGGGGTAATTATCTCATTCACCCAGCCTAATTTTTAAACTTACCTTCCTGAGCAAGATTTTACTATGTTGCTATTCACCCTCTCTTCACTCTGAACAAGATTTTACTA-TGTTGCTGTTAATTTCTGGGGTTCGGAGAATCTGACTAGTGTGAGTTTCCCAAGGTAAAGGTAATGACTTAATAATTTTCA-----CTTTAGTTGCTCTTTGCGCAGTGTTTTGCACAAAATTTA-ACACAATAATTACTCCCGGAGTAAACGCATAAATCTTTGCAATGTCCT-ATTTGGCTCCCTTAGAGTCTGGAACTTTTCCCCTACAACCATCCAGAGTCCTGTCTAACCAAA---GTGAAAATGGGG------------------------------------------------------------AACTCCATCTT-CTCGCTGGCATCACTGCTGAGAACGGAAATAAATGCTGTCTATGCCAACTCCCTAGAACAAGTATAGATTTCATCTAGGCTAGTTTTCAAAATGAGTGA s canFam1.chr11 19743281 829 - 75769841 --TGTCTGGAATTAGGATGAAAAGATTATTTTCTAAAACTCTGAGTTCCATTCATCCTCCTCACCACTAACTACCCCATAGCCCTCCT--ACCACCACTCTGCCCTGCCCTCTCTCTGGCTCAGAAGTCCCTCACCAACTCTGCAGCCCCTGCCAAGTCCAACTCCCAGT-CCTAGATGAGCACAGAGGCC--CCCACGTCTGGTTCCCACCCGGACCCTTCCTGCTTCAGCCAACTCTCCACTCTTCCTGCATATGCCCCCTCGCCCTGCTCCCCCGGCCTCCCTCACCCTGCTCCTCTGCTG----------GCATCCACACATCCCAGACCCAGCCAGCCTTCCACT-----ACCAGTGGCAAGTGTCCCGGCCACTCA---------CTTCCCTCACCCCCTGG--------------------CC------CCTCTCCTGTCTCTGGATGTGCGTGTATGGTGGTTGCTGGCAAATACCGGAGTTCAGAACATCCAG--AGTAGGTGTTTCCTGAAGGGCAGGTATATGGTCACTAATTCTGATTCAGCTTCAGTTGCCCTTCGCACAGCATCTTGCACGTGGTTCAGACACAGTGACTATTCCCTGGGTAAATGCATGCATAGCTGGAATGTCCTGATCTGACACTCCTAGAGTTTGT-CCCTTTCCCACACAGCCAGCCAGAGTCCTACATGGCCAGACCTGACAACACGGGGTTATCGCTGAACCTGACTTGAAGGTTTTCTGCGCTTTGTGAGGTACCTAACTTCCAAGAAAATTCCTCCCC-TTAGCAGAGATCTCTGTCCCAATTGCTAGTAAATGCACCCTATTACAACTTCCTACAGCAAGTGATCATTCCATCCAGACTAGTTTCAGAAATTAA-AA a score=22015.0 s hg17.chr17_random 2220696 105 + 2618010 AACAGGATGCAGACAAATAC--TTTATTCCCACTT-TTTGGCC-TGGGGTTTATTAACAAGGTGAAATTATACAGAAGAATAAATTAGTTTAGCTGAAAAAAGAAAAAA s panTro1.chrUn_random 177446407 106 - 240967748 AACAGGATGCAGACAAATAC--TTTATTCTCACTTCTTTGGCC-TGGGGTTTATTTACAAGGTGAAATTATACAGAAGAATAAATTAGTTTAGCTGAAAAAAGAAAAAA s mm5.chr4 109006756 94 - 154141344 AAAGAGATGAATACAAAACCCTTTTAGACTCATTG-TTTGGTC--------------CAGGGTGAAGTAAAATAAAGACAGGATTCATTTTAGCTGAAAAGAAAAGAAA s canFam1.chr11 19744110 97 - 75769841 AACAGTGAGTAGAAAACCCT--TTTATTCCCCTTT-TTTGGTCCTGGGTTTTATTAACAAGGTGAAATATTG---------AATTAATTTTAGCTGGAAAAAGAGGAAA a score=0.0 s hg17.chr17_random 2220801 1 + 2618010 T a score=61.0 s hg17.chr17_random 2220801 1 + 2618010 -T s panTro1.chrUn_random 177446513 2 - 240967748 AT a score=6507.0 s hg17.chr17_random 2220802 51 + 2618010 GTATAGTTAATGGAGGGAAAAAATTGAAAATGCAAT-AAAACCAGAAGATGT s panTro1.chrUn_random 177446515 48 - 240967748 GTATAGTTAACTGAGGGAAGAAATTGAAAATGCAAT-AAAACCAGA---TGT s canFam1.chr11 19744207 52 - 75769841 GTGTCGATAACCGAGGGAAGGGGTGAAAACCACAGTAAAAACTAGGACATGT a score=208911.0 s hg17.chr17_random 2220853 2386 + 2618010 TCAGGAATTCAAAgttgttgatgcatagaaatgctactgatttttgtacattggttttgtgtcctaaaactttacttgcttatccgtttcaggaggcttttcaagttttccccaaaagtagttttggagaggctttagcattctctacgtagtgactcatattgcaaatggagaaagagaattcaatttctttttctatttgtatgcctttttcttttctattggccgattgctctggataggacttttaAATCTAATTAAattgtatttgttagatttttgtatattttaatatgtctccaattaattttatatctgtataatgtccccttataaaggaatatgtagctgttttagttatttattttattattgatgcacatttgagtttttttcagtttggaaaagtaccaaataatgctacttcgagcactttactacattggaaaatatgctggcaattctattgggtgtatatacctagtagcagagttgctgggttctagagtgtgcttatgtacatcgtgtatgtaaggagttactactcaagtggttttgaatgtggttataacagtttgcacacagaatggtataagaaagttccagttgcttgac-atcatcactagtacttaattttgtcagttttcaaaaatgttaatgattgcatagtggtattcaattgtagttttcatatgcattgttctgatgcataagaatgtggatatgttcatctacttgttggcccttcggttctgtatgtggaactcctagtcatatctttgccaattttgttcaatgtatgcatttttgtttattaagtgatgggatttagcttaataatctagataaaaagcttttgccagatcaatatatgacaaatgttgatttccactttgttcttgcctttcagctctcctgaagctttttttttttatgaagagaaggttttaattctaataaagtccaatttgtcatatttttgtcttgataatttatgcattttgtgtcccaagaaatcttggcctgtgccaaagtcatggacatacttatctatgttatctactagaaatattgttttcaattttcaccttaaaatttaaaatccacttgtttcgaaatttgttaacaatataagataggtttatttctttctcacataaataaccagatgacccaaggctaattaccgagatgctgtcttctctccactgctcttctgtgcctgttttgtaatatacaaaatgtctaaatgtgtgagtctgagttggactctcgagtttttctagttttctttgtgcctatttttgtattactaccatagatagcttttattactatagctttaatctaagtctgaatatatggcattgtaagctcacaaactttgtcattcttcaggacagtttttacagttctttgattttttaatatgtatttaaatttttaaactgattagacagttt-ccacaagatttctgccaaaatattgtattgtgaaaatggaaatcaataaatcaatttggggagaa--------------------------acactaataacatctaaacCAAACTTAAAGAGAACACCACAATAAGAAAAGAAATTGCAAAATTGGAATAAATATTTTCAACACATGAAATTACAAAGGGGCTCATGTTTCCATGAAGAGCActctctctctccctctctctctctctctttttttttttttttacagagactcactctgtcacccagtctggagtgcagtcgtgcaatctcggctcactgcaacctccgcctcccaagtttcagcaattcttctgtctcagcctcctgagtagctggggctacaggcttgggccaccattccccgctaatttttttgtaagtttagtagagacggattttcaccagattcgccaggctggttttgaactcctgacctcaaataatccac--ctgcctcatcctcccaaagtgttgaaattacaggtgtgaggcaccacagctgaccTGTAAAGACCTCTTAAAAATTAGTTAAAAAACAAACAAAACAGAAAAAGAGAAAGAAGAAACATCCACTCAGTTaaaaaaaaaaaaaaagaaaaagaaaagaaaagaaaaaaaGGCAAAAGACATTATTTTACAGGTCTAGTGCCCTGTGCCCCTCACTGTAATGGGGGTGGATATGGGCTTCACAGGACATGAAATTCATCAAACAGTTGCTGGTTGAAGGAGGGAAAATCTTGCGGGACCAGCCTCCAGAACAGAGCCTGTGGTGCACTGTTTCATCCCGTAGCCCTGGTAAGAAAACCTGGCTGTGCCGTGCTTTATGTTTGCCTGCACTGGCCCTGTTCAGAGGCCTGAGCACGCATGGACACCTAAGTCTGCCCAAACTTTCCCCATCCCAATATTCTCTGTGGTATT s panTro1.chrUn_random 177446563 2406 - 240967748 TCAGGAATTCAAAgttgttgatgcatagaaatgctactgatttttgtacattggttttgtgtcctaaaactttacttgcttatccatttcaggaggcttttcaagttttccccaaaagtagttttggagaggctttagcattctctatgtagtgactcatattgcaaatggagaaagagaattcaatttttttttctatttgtatgcctttttcttttctattggctgattgctgtggataggacttttaAATCTAATTAAattgtatttgttagatttttgtatattttaatatgtctccaattaattttatatctgtataatgtccccttataaaggaataagtagctgttttagttatttattttattattgatgcacatttgagtttttttcagtttggaaaagtaccaaataatgctgcttcgagcactttactacattggaaaatatgctggcaattctattgggtgtatatacctagtagcagagttgctgggttctagagtgtgcttacatacattgtgtatgtaaggagatactactcaagtggttttgaatgtagttataacagtttacacacagaatggtataagaaagttccagttgcttgactatcatcactagtacttaattttgtcagttttcaaaaatgttaatgattgcatagtggtattcaattgtagttttcatatgcattgttctgatgcataaggatgtggatatgttcatctacttgttggcccttctgttctgtatgtggaactcctagtcatatctttgccaattttgttcaatgtatgcatctttgtttattaagtgatgggatttagcttaataatctagataaaaagcttttaccacatcaatatatgacaaatgttgatttccactttgttcttgcctttcagctctcctgaagctttttttta--atgaagagaaggttttaattctaataaagtccaatttgtcatatttttgtcttgataatttatgcattttgtgtcccaagaaatcttggcctgtgccaaagtcatggacatatttatctatgttatctactagaaatattgttttcaatcttctccttaaaatttaaaatccacttgtcttgaaatttgttaacaatataagataggtttatttctttctgacataaataaccagttgacccaaggctaattaccgagatgctgtcttctctccactgctcttctgtgcctgttttgtaatatacaaaatgtctaaatgtgtgagtctgagttggactctcgagtttttctagttttctttgtgcctatttttgcattattatcatagatagcttttattactatagctttaatctaagtctgaatttatggcactgtaagctcacaaactttgtcattcttcaggacagtttttacaattctttgatttttttatatgtatttaattttttaaactgattagacagttttccacaagatttctgccaaaatattgtattgtgaaaatggaaatctataaatcaatttggggagaacttacatAGAAACAAAGCAAAACAAAACACTAATAACATCCAAATCAAACTTAAAGAGAACACCACAATAAGAAAAGAAATTCCAAAATTGGAATAAATATTTTCAACACATGAAATTACAAAGGGGCTCACGTTTCCATAAAGAGCActctctctctc------tctctctctctttttttttttttttacagagactcactctgtcacccagtctggagcgcagtcgtgcaatctcggctcactgcaacctctgcctcccaagtttcagcaattcttctgtctcagcctcctgagtagctggggctacaggcttgtgccaccattcccggctaatttttttgtaagtttagtagagatggattttcaccaggttcgccaggctgattttgaactcctgacctcaaataatccactgctgcctcatcctcccaaagtgttgaaattacaggtgcgaggcaccacagctgaccTGTAAAGACCTCTTAAAAATTAGTTAAAAAACAAACAAAACAGAAAAAGAGAAAGAAGAAACATCCACTCAGTTaaaaaaaaagaaaa-gaaaaagaaaagaaaagaaaaAA-GGCAAAAGACATTATTTTACAGGTCTAGTGCCCTGTGCCCCTCACTGTAATGGGGGTGGATATGGGCTTCACAGGACATGAAATTCATCAAACAGTTGCTGGTTGAAGGTGGGAAAATCTTGCCGGAGCGACCTCAAGAGCAGATCCTGTGGTGCACTGTTTCATCCTGTAGCCCTGGAAAGAAAACCTGGCTGTGCCATGCTTTATGTTCGCCTGCATTGGCCCTGTTCAGAGTCCTGAGCATGCGTGCACACCTAAGTCTGCCCAAACTTTCCCCATCCCAATATTCTCTGTGGTATT a score=28666.0 s hg17.chr17_random 2223239 251 + 2618010 GAGCATGACACCCTGTCTTCACTGAGCATGTGCTCATACAGTTTTGTAGcc-aactcttcattttacagcaggaagactgagacctcccaaaaaggcaaagactggtccagatccc------agaaact-gggcagagcacagag-tattaggg-agggatccagcttcctaggccttgcATGCACCCCACCCATCAGGTTTGCTTTGGAAATGAGAGCCCATGAGTCCTGGAAAACCCTGTGCTCTACTTTCTACCTGGG s panTro1.chrUn_random 177448969 256 - 240967748 GAGCATGACACCCTGTCTTCACTGAGCATGTGCTCATACAGTTTTGtagcccaactcttcattttacaacaggaagactgaggcccccaaaaaaggaaaagactggtccaTATCCC-----CAGAAATTTGGGAAGAGCACAGAGGTATTAGGGGAGGGATCCATCTTCCTAGGCCTTGCATGCACCCCACCCATCAGGTTTGCTTTGGAAATGAGAGCCCCTGAGTCCTGGAAAACCCTGTGCTCTACTTTCTACCTGGG s canFam1.chr9 43844829 235 + 53642819 GAGCAGGGCGCCGGGCCCGCGCTCAGCGCGCGCTTACGCAGTTCCGCGTCC-AGCCCCTCCTGGTACAACTGGGAAACTGAGA---CCAGGAGAGGCGGGGATTGGCCCGGGGCGCGCGAGGGGAGAGGTGAGCCGAGTCCAGAG-----AAGGAGAGGTTCTGGTCTCCCAGGCCAGGGCT-CGCCCCTCCTATGGGGTTTCCAGTGG--------------GAATCCTGGGGACCCCTTCACCC--CCTCCCATCTGGG a score=2922.0 s hg17.chr17_random 2223490 37 + 2618010 CTTTCTACTCTTCAATGTTGTCACATAGGCGTGCATG s panTro1.chrUn_random 177449225 37 - 240967748 CTTTCTACTCTTCAATGTTGTCATGTAGGCATGCAGG a score=69386.0 s hg17.chr17_random 2223527 579 + 2618010 CATGcacacacaaacacatcacacacacacacacacaca--------GGCTTCTAAAGTGGAGATCTAAAGTGGAGATTCTAAAGTGAGGTTAGGGAAGA---GGAAACCAAAGAAGTGACAAAAGGGGAAGAAACAGTAGATGCAGCTTTGCCATGAGGCAGAGGCATCCACTCCCCCAGCTACATGACCAGGAGCTGACA--------------GCATGG------GATGA---AGGATCCTCCAGGTTCCCTGGGTTCTTCCAAGCCTGGGGACCTTCCCA-GCTGTTTCAAGAGGACAGGA-CTGGGGTTGTGACTCCCACTTCTGTGGGCACCTGGAACTAAAATGAGCTATGCCCTCCACCCACCACCCCGTGTGATATAAAGACAGGCTACGGGAAAGAAAGCCTTTGTTTTCTCCCTCATAAATAGGGGTACTGAGAAGGAATAATACCAAGGATTCTAGATACTCATAG--GTGTCTGCCGCCCTTGGCTTTTCATTGGTAAATCACTGTGCTTTGAGACTCTGGGAAGAGGCTTTTCAGTTTCTAGAGGTCCTTCAGAGAAGAGAGAGGCCTAGAGACTTG-GGCGGATGAGGACTTGGAATAAAGCA s panTro1.chrUn_random 177449262 587 - 240967748 CATGcacacacaaacacatcacacacacacacacacacacacacacaGGCTTCTAAAGTGGAGATCTAAAGTGGAGATTCTAAAGTGGGGTTAGGGAAGA---GGAAACCAAAGAAGTGACAAAAGGGGAAGAAACAGTAGATGCAGCTTTGCCATGAGGCAGAAGCATCCACTCCCCCAGCTACATGACCAGGAGCTGACA--------------GCATGC------GATGA---AGGATCCTCCAGGTTCCCTGGGTTCTTCCAAGCCTGGGGACCTTCCCA-GCTGTTTCAAGAGGACAGGA-CAGGGGTTGTGACTCCCACTTCTGTGGGCACCTGGAACTAAAATGAGCTATGCCCACCACCCACCACCCCGTGTGATATAAAGAGAGGCTACGGGAAAGAAAGCCTTTGTTTTCTCCCTCATAAATAGGGGTACTCAGAAGGAATAATACCAAGGATTCTAGATACTCATAG--GTGTCTGCTGCCCTTGGCTTTTCATTGGTAACTCACTGTGCTTTGAGACTCTGGGAAGAGGCTTTTCAGTTTCTAGAGGTCCTTCAGAGAAGAGAGAGGCCTAGAGACTTG-GGCGGATGAGGATTTGGAATAAAGCA s canFam1.chr9 43845074 553 + 53642819 CACGCGCCCACAGGTACAT-----------ACACACACT--------GACTTCACAGATGGGGGCC-------------ATGGGATGGGGTCGGAGGAGGAGTGGACACTGCGGAGGTGACAAGAGGGAAAGAAGAAAGGGATTGGAGGCAGCCATGGGGCGGGGGCATCCAGTCTCCTGGGAGGATGTCCAGG-GCTCATACGTGGCAAGGGGAGACATGCCCGGCTGATGACCGGGGCTCCGCAGGGTGCCCAGGGGGCTGCCTGG-CTGGACACTTTCCTAGGGCACCTGGGGAGGACAGGCTCTGGGGTCCTGGCACACCATCC--TGGGCACCTAG-ACTAGGAAGAG---------ACACCCGCC-----------TAGGTGGAGGGGCTACGAGACAG---GCCTCAGCTTACTCCTCTGAAGGTTGGGCTGCATAGA--GCAGGGCACCTAGGGTCCCACAGGCTTGTGGAAGAATATCTTGGCCCTGGATCTCCATCCCTGACTTACTCCGCTCCCAGGC-CAGGGAACATGCTTGGGACTGCCTGGAGGTCCTTCTGAGCAGAGGGCAGCCTGGGGGCTTGAGGGGAATGAGGAGCTGGG--TATGCA a score=5516.0 s hg17.chr17_random 2224106 68 + 2618010 GAATGTGACAATGCACTGGGCTCTGGAGTGTGCGGCCCAGAAAAAAATACTAGTTTTTTGGGCTGTCC s panTro1.chrUn_random 177449849 67 - 240967748 GAATGTGACAATGCACTGGGCTCTGGAGTGTGGGGCCCA-TAAAAAATACTAGTTTTTTGGGCTGTCC a score=80743.0 s hg17.chr17_random 2224174 731 + 2618010 TTGAGGTCCTCATTCGGAAGTGGAAG---------AAAATAATGTCG-CCGAATGCTGTTAAAATGTTTAATGAGTGCACAGCACACCCAAGGAGGCTGAGGAAAATAGGAATCAAGGGAGGTTTCCGAGGTCACTTTTA--TGGCCCTTGGAGCCTTCAGATACTGCTCCTTTTCCCAGGGGTCCCTGAATAGCCACTGCCTTGAGAATTCCCCAATGCAGGTACC----TGTTTTGTGATGCTTCCACCTGGGACTTCAGTGCTAGTGGAGATCTCTAGGTGGCGGCAGACCCCGTGTTTCTTATGCCAGCTGGACTTTACTGGAGTAGCTGGAGC-CGGGGGAGAGACAGGCTGAGGTCCT----------------------------GCACCTC----CTGTTATCA-TTCTTGATCTCCACATTATTGGGTGACCGAAAGCAGGAAGGACTTTGTGATTTTC-CATGTTATTTTACTCAGCGGCTCTTCCCCTAGCACTCACCCTGTGGCAGCTACCTTGGTAGGTTCACCATGTGGTACCAAAAATGATTATGTTATCCCTGCCTCCCGGC-GGGAGCCCACAGTCTGAGGACAGCAGGACAAAAACACTAAAGCAAGTACATGTGAAAGAAAAGAGCATTT----TATAATGGAAATAAAGTAGAATGTTTGGAGGGAGGGCTGGGGAGAGGTTGACTGCAGGGGACATGAATACCTCACTGA-GCTGACATTATGTTGTGACCAGAATGACAACTGCG-------------------CAGGTGTGGAAAGTGTGTCAG s panTro1.chrUn_random 177449916 735 - 240967748 TTGAGGTCCTCATTCGGAAGTGGAAG---------AAAATAATGTCGCCCGAATGCTGTTAAAATGTTTAATGAGTGCACAGCACACCCAAAGAGGCTGAGGAAAATAGGAATCAAGGGAGGCTTCCGAGGTCACTTTTA--TGGCCCTTGGAGCCTTCAGATACTGCTCCCTTTCCCAGGGGTCCCTGAATAGCCACTGCCTTGAGAATTCCCCAATGCTGGTACC----TGTTTTGTGATGCTTCTGCCTGGGACTACAGTGCTAGTGAAGGTCTCTAGGTGGCGGCAGACCATGTGTTTCTTGTGCCCGCTAGGCTTTACTGGAGTAGCTGGAGCAGGGGGGAGAGACAGGCTGAGGGCCT----------------------------GCAGCTC----CTGTTATCATTTCTTGATCTCCACATTAGTGGGTGACCGAAAGCAGGAAGGACTTTGTGATTTTC-CATGTTATTTTACTCAGCGGCTCTTCGCCTAGCACTCACCCTGTGGCAGCTACCTTGGTAGGTTCACCATGTGGTACCAAAAACGATTATGTTATCCCTGCATCCCCGCGGGGAGCCTACACTCTGAGGACTGCAGGACAAAAACACTAAAGCAAGTACATGCGAAAGAAAAGAGCATTT----TATAATGGAAATAAAGTAGAATGTTGGGAGGGAGGGCTGGGGAGAGGTTGCCTGGAGGGGACATGAATACCTCACTGA-GCTGACATTATGTTGTGACCAGAATGACAACTGCG-------------------CAGGTGTAGAAAGTGTGTCAG s canFam1.chr6 76033345 751 - 79106041 TCAAGGTCCTCATTTGGATGTACAGGAGTGGGTGCAGAATCACTCTT-CTGGCTGCT-TGAGAGTGCTGTGTTAGTAAAGAGGACA-CCATGGGAGTGAACAGAAAAGGGAGTAAAAGGAAGCTTTTGAGG--ACTTTTAATCTGCCTCTAGAG---GAAGATCCTGCTCTTTTGCCCCTGTGATTCTGGAAAGCCACTGCTTTGAGGACACCCAAATAAAGGCATCCCTTTCTTTGGTAGTGTGCCTGTGTGAGACT-------------GGACAACACGATGCAGGAAGCCTCCTTGTCCATGGCACCTAGAGAGTTCTGGTGGAGGAACTGGAGC---AGGAACAGTCATGCAGAGGCCATTTTGGTTGGTTGTCTCCCTTGCCCAGAAACAGCTTGAAACTGTTAGTA-GCATTTTTCCCTGCAGTCTAGGTGGTTAGAAGGAGAGGTGGGCTCTAAGACCTTCTCatgt--attcattcagtaactatgtcctaag----caccctctgccaggtaccttggtgggccca-tgtgtggagctgaaaat-actaaggtctccctgccgtt-----aggaactcacagtctggagat----ggataaaagcacaaaagcaaaggcacgtgatagaagacagcaagtaatatgtactacaaatgaagtgtgctat-------gaaggctgggagccattggataggaaggtatg-aaaggccttactgaggatgatgt--tgctgggaacagaatgacaaaagggagctagacgttcatgagtctgggtgcaga----gtgtcag a score=8222.0 s hg17.chr17_random 2224905 43 + 2618010 GGAAAAGCCACTCTTTGTGAAAAGACTCAGAGGCACAAGTCAG s panTro1.chrUn_random 177450651 43 - 240967748 GGAAAAGCCACTCTTTGTGAAAAGACTCAGAGGCACAAGTCAG s mm5.chr6 90561912 43 + 149721531 GGAAAACATGCTTTTTCTGAAGTAACTCAGAGGTATAAGTGAG s canFam1.chr6 76034096 42 - 79106041 aaagaagggatcactgctgcagacactca-ctacagaagccaa a score=67510.0 s hg17.chr17_random 2224948 550 + 2618010 TTTAGCAGAGGAGGTTATAAAGG-GACAAGTGTGGCGGCAGGCAGCCTGAGA-------AAGAAAGGAAAAGAGGGGAGGGTGTATCCTGGGGTCTGAAAGAGGAGGTTAGTCAT---TTGCCCGTCTCtgacaacattgccctga-------atttta----gcacattttgacaacaaatactatctcacaatttttgtgaac-cagaatctcgatatagcttagttgggtgcctctgcctcaaggtcccttatgaggctggggctgtgatttcaactgaagctggatttggggagagatcagcctccaatctgcctcatggaaattggcaagattcaatgtgaactgagaaccccagtttcttcctgttgattggcctgggcagttcctcagttctctatcatgtggg-tctgtgcctagagcatcttaggaca-ctggagatcgcttccTCATCTTGAAGAATACAATagagagatggaaaatgaaagagatagacagacatatgcacagaaaaagagaaagggagacagagagattgagagaTGAAACACAGGACAG-AGCAAGTGGGAGG s panTro1.chrUn_random 177450694 551 - 240967748 TTTAGCAGAGGAGGTTGTAAAGG-GGCAAGTGTGGCGGCAGGCAGCCTGAGA-------AAGAAAGGAAGAGAGCGGAGGGTGTATCCTGGGGCCTGAAAGAGGAGGTTAGTCAT---TTGCCTGTCTCtgacaacactgccctga-------atttta----gcacattttgacaacaaatactatctcacaatttttgtgaac-cagaatctcgatatagcttagttgggtgcctctgcctcaaggtcccctatgaggctggggctgtgatttcaactgaagctggatttggggagagatcagcctccaatctgcctcatggaaattggcaagattcagtgtgaactgagaaccccagtttcttcctgttgattggcctgggcagttcctcagttctctatcatatggg-tctgtgcctagagcatcttaggaca-ctggagatcgctcccTCATCTTGAAGAATACAATagaaagatggaaaatgaaagagatagacagacatatgcacagaaaaagagaaagggagacagagagattgagagacgaaacacaggagagaAGCAAGTGGGAGG s canFam1.chr6 76034138 497 - 79106041 tttggcagatgaggtgaaagagacggccagtgtggctgcagggaaactaggagagcagtgaggaaggaagagggcaggaagag-atgCTGAGACCTGGTAGA--Ctgttagttatctgttgttcctctgttattacattgccccaataccttcatcttaaaatgcatatatt---------taatttctcacaggttttttggatgaaggatccaggta---attagcttggttcctcagcctcaaggtatgtca-gaggctgtggctgtg------actgaggccagactagcagag-gattttctcccaagtttgctcacatgatt---ccagatgccatttggactcagagcctgagtttctgtgtgtcttttggccttggcactgccttggttctctgccatgtgagctcta----tatggcagctgaaaacatctgta--------------cttgaat--ttaggttcagggatagagaa--------------------------agtaaaagggaaagggaggaaaagagaagg------gaaacatgagagga-agtaactaggaag a score=135276.0 s hg17.chr17_random 2225498 1540 + 2618010 AAAATAATAGCTATTTTAGAAATATAACTTTGGAAGTTGCAGTAGACTAtgtgattccccaccatattcacattccagaacattaattcccagtgtaatggccttagcaggtcagaggtaattaagtaagtcctaagcatgaggccctcgtgatagagattactggctttgtaaaagaaaccgcagaaagctgtctgtccctctctttgctaaatgagaatacaacctgaagtctggagtttgaaactcagaagagagtccttaccagaccccaaccatgctggaagccaatctcaaatttctagcctccagaactaaagtcttttgtttataagttgcctagtctatgttttttggtatagaagtctgaacTAAGTCAGAAGTGATAACCTATCACATTTGTTGTTTTCTCTTTGACAGAAACTAGAACCAGGTccccaaagagttcaaccaatgactagcagaaattcttcagtttgcagaatgacagataagaaaagatagaacttgttgaaagaatgaaatttattccacttatgagacttctaaaaagtggctaaaattggtcggaaccaatatggtcaactggagtctgtgtgaaataagctcactgatgtcagagcccaaatttccatcacatgttttgtactaactgtccccaaatttgcacatgacctgtgtgtagcaagaaaagatggctgttcatgcccagtgactttccatacatttttcctttcagcaattccctgctaaacaagaagccacctcttaaacctttctgagaatattactacctttaagtaagcacagggaaagaggcttcagctggaatccaatgcctttgttggAAACCCGGTGTTATAGTACCGGCTTCTGAGGCACTGAGAGGTGAGCTGCGTTTTAAAATAACAGAGTCACTCACAACTT-AGTGTTGTTGTGAGA---CTTTGTTGGGGGCGCCCACCACATAGGCTGAGATGAAGCATATACATGTGATTCCAAATATAATGCACAGCACTGGAATATTTAATGCCAGAATACAGTATCTGATTTTCTTTTGATTTCAACCTCTTCTGCTGTAGAATGGAAAAATAAGGCCatatatataaaatatatatcttttatgtatacagatatatgaaatatatatcttttatacataaaggtgtatatgtataagtttatatattatatataatatataaatataaat-tatatatacatagtatatat-tttttttgagacacagtctcgctctgtcacccaggctggagtgcagaggcatgatcaaggctcaatgtaatctctgcttccttggctcaggtgattcttacacctcagcctcctgagtggctg-ggattacaggcaagcatcaacacatctggctaatttttgcatttttagtggagaagggtttttgccatgctggccatggctggtttcaaacccctggccttaagtgttccacccgtcttggtctaccaatctgctaagattacaagcaagagcaactacatccCACTGATTTTGATTCATTCTATCT s panTro1.chrUn_random 177451245 1543 - 240967748 AAAATAATAGCTGTTTTAGAAATATAACTTTGGAAGTTGCAGTAGACTAtgtgattccccaccatattcacattccagaaccttaatccccagtgtaatggccttagcaggtcagaggtaat----taagtcctaagcatgaggccctcgtgatagagattactggctttgtaaaagaaaccgcagaaggctgtctctccctctctctgctaaatgagaaaacaacctgaagtctggagtttgaaactcagaagagagtccttaccagaccccaaccatgctggaagccaatctcaaatttctagcctccagaactaaagtcttttgtttataagttgcctagtctatgttttttggtatagaagtctgaaTTAAGTcagaagtgataacctatcacatttgttgtattctctttgacagaaactagaaccaggtccccaaagagttcaaccaatgactagcagaaattcttcagtttgcagaatgacagataagaaaagatagaacttgtcaaaagactgaaatttattccacttatgagacttctaaaaagtggctaaaattggtcggaaccaatatggtcaactggagtctgtgtgaaataagctcactgatgtaagagcccaaatttccatcacatgttttgtactaactgtccccaaatttgtacatgacctgtgtgtagcaagaaaagatggctgttcatgcccaatgactttccatacatttttcctttcagcaattccctgctaaacaagaagccacctcctaaacctttctgagaatattactacctttaagtaagcacagggaaagaggcttcagctggaatccaatgtctttgttggAAACCCGGTGTTATAGTACCGGCTTCTGAGGCACTGAGCGGTGAGCTGCGTTTTTAAATAACAGAGTCACTCACAACTTAAGTGTTGTTGTGAGAGACCTTTGTTTGGGGCACCCACCACATAGGCTGAGATGAGGCATATACATATGATTCTAAATATAATGCACAGCACTGGAATATTTAATGCCAGAAGACAGTATCTGATTTTCTTTTGATTTCAACCTCTTCTGCTGTAGAATGGAAAAATAAGGCCATATATATAAAATATATATCTTTTATGTATACAGATATATGAAATTTGTATCTTTTATACATAAAGGTGTATATGTCTAAGTTtatatattatatataatatataaatatgaatatatatataattagtatatatatatttttgagacacagtctcgctctgtcacccaggctggagtgcagaggcacgatcatggctcaatgtaatttctgcttccttggctcaagtgattcttacacctcagcctcctgagtggctgaggattacaggcatgcatcaacatatctggctaatttttgcatttttagtggagaagggtttttgccatgccggccatggctggtttcaaacccctggccttaagtgttccacctgccttggtctaccaatctgctaagattacaggcaagagcaactacatccaaccGATTTTGATTCATTCTATCT a score=83964.0 s hg17.chr17_random 2227038 659 + 2618010 CATATATCGCCAATGACTCTTTCTGGAAGTTGATGCTAGCCTAATCCCATTATGCATACTTCAGGGCTGGGGAG-AACTGAAGCGCACAGTCATTTTCATATGGTCACA----GAAATGAAAA---GGAAAAGAAGATTTTAATCCAACTCTCTTCTCTCAAACCTGGGGCCCTGGCTGTATTT--AGATCTTTATGGGGAGTAAGAGGCATAATTGTGTTTGCATAACTGTTTACA---GGAAAAGAGTTGACATGGGAGAGGAGGGTGAGC-AATCAGCAGCCCAGCAGGGACTTTGCATAGAT-TTATGGAGGAAAAGGGCTCAGGGGATAAAACCTT-GAAGAAGTTAACAGACTTCCCTTGTGACAGAACCTAACA-GAATTTAGAACTTT-GGAACCAGAAACCCACATTCTAGAGACAGCCCTCTATCTAGCTAATTTCATGGGAGATGCTTGAGAGAGCACTGTGTTCTCATTGTGTGCTATATTCCTA--------AGCTGTTGCCTGAGAAAGGTTCAAAGTGAGAGCCTTTTCTGACCATATACATATTGGCTCAGCCCACATCCTTGATACCACTGGCCATTCAACAAGAGGCAAACACAG------GTAACACAGTGAAGCCTAGGTCAGGTCCGTCCATGCCAGGCCACCCGTGTCATCTAATCTGGGCAACCCGAC s panTro1.chrUn_random 177452788 661 - 240967748 CATATATCACCAATGACTGTTTTTGGAAGTTGATGCTAGCCTGACCCCATTATGCGTACTTCAGGGCTGGGGAG-ACCTGAAGCACTCAGTCATTTTCATATGGTCACA----GAAATGAAAA---GGAAAAGAAGATTTTAATCCAACTCTGTTCTCTCAAACCTGGGGCCCTGGCTGTATTT--AGATCTTTTTGGGGAGTAAGGGGCATAATTGTGTTTGCATAACTGTTTACA---GGAAAAGTGTTGACATGGGAGATGAGGGTGAGC-AATCAGCAGCTCAGCAGGGTCTTCGCATAGAT-TTATGGAGGAAAAGCGCTCAGGGGATAAAACCTTAGAAGAAGTTAACAGACTTCCCTTGTGACAGAACCTAACA-GAATTTAGAACTTTGGGAACCAGACACCCACATTCTAGAGACAGCCCTGTATCTAGCTAATTTCATGGGAGATGCTTGAGAGAGCACTGTGTTCTCATTGTGTGCTATATTTCTA--------AGCTGTTGCCTGAGAAAGGTTCAAAGTGAGAGCCTTTTCTGACAATATACATATTGGCTCAGCCCACATCCTTCATACCACTGGCCATTCGACAAGAGGCAAACACAG------GTAACACAGTGAAGGCCAGGTCAGGTCCGTCCATGCCAGGCCACCCGTGTCAGCTAATCTGGGCAGCCCGAC s canFam1.chr6 76035263 647 - 79106041 CACATACACTTGATGATGTCCCTAGGAAGTAGATTCCAGCCTGATCCCACTATGCAGGTTGGGACACTGGGGAATACATGAAAGACACAATGA-----ATAAGAACACAATTGGGAATACAAACAGACAAGAAAAGGTCTGAATTCAATTCTGTCTCCTGAAAATTAGGACTCTAATTACATTTCCAGAGAGTTGTGGCTAG-----GGCA------TGTTTAACTCATTGTGTACAGTTGTTAAAGAGGTGACATGGGTGAGAAAGGTAAGCTAGTCAACTGCCAAGAAGGGACTTTGGATAGGTATGACTGAACAAAGGGGACCAGGTACTGGAATCTT-GAAAAAGTGACCTCACCTCCTTGGTGATAGGCCCCCAAATGAACTTAGAACTCTGGTGACTAGGCACCTAGAGTCTAGAGACAGCCTGCTTTCCAGCTCACTTGACTGGAGACATTCAAGAGTACAAGAGGTTC----TGT-TGCTATATTCCTACTTTCAGGGGCTCTGGGCTCAAGAAAGTCCAGA--CAGAGACTTTTATATCATTGTAGATGTTGGCTCAGCCCTCTTCTCCAGAGCTTCTGGTCATGTGGTAGGAGACACCAACAGCTCAGAGCAGTACACCGGAG--------------------AGCAAGCCACAACTGTGATCCCACCTGAACAGGCCAAC a score=1634.0 s hg17.chr17_random 2227697 22 + 2618010 CCTGTCTACCATTACCATGTGT s panTro1.chrUn_random 177453449 22 - 240967748 TCTGCCTACCATTACCCTGTGT a score=112414.0 s hg17.chr17_random 2227719 1014 + 2618010 TGCAGGGGGAGCAGGAAAGGAGGGG---GCTCTTTCT-CACAGGGGCAGGCTGTAAGGCATTGGAACCCTGGCGGGTATGTCATGTTCGTA-CCCAGGTCATGGCTGGTGGAATAAAAAGTTGAGCA-TTGTGGAC-CAAGTGTGTCTACTCAGATGTGAATCCCAAGGCCTTAAGCTGTCCTCGGGTTTCCTCATTGGCTGGGGGTCTATGCAGATACTCCTATGTTCCTGATCTAGGAAACAGAATTTCTAATGGAGATGTTACCTGGTGGTAAAAACAAAGGAAATAATTAA-ttttttttcttttttc---ttttttttttttCTGCTTCGCTGCTGGGAACACTCTTTGTAGGGTTTCATT---AAAA-TCATTGAGCAGGTATTTGATGGGTTCAAGTCCCCCAACTCCTTGGACAACTGGCAGGTTCACCACACCCCCAAGCATGGCATACAGTGAGTTATGGTGAGAGCAGGCACATGGGGATCTCTACAGACAGGGGTCTGACAAAACCAGGATGGGCCCAGGATCCAGAACCAAATATGGAATTTCTCTGCGCTTTCTCT-TAGGGGATTTCCATGAGTGACCCAAAG--ATCTGCCTC-CCAAAAATCTAGCCTTAACTAGTCCCAAAGGCAACTTGGTTAAGTGTAAAGTCCCTTTTTACATTCTTGTAGAAATATCAGAGAAGACCTT---TGTGTTG------------------------TTTTTACTTTACACTAGGC----TGTATTTATTCATGTTACTACAGTTGGTATGGTTTTAATTATT-CCCCCTGGTATCACCTGTAGCAGGCAGCTTCACGGCACTGCCAGACCTTCCCCAAGACTTCA-AAGCCACCACTAGCATTAATACTCTAGAAAAATAGGGAAGAGTTTACACGAAAAG------GGGGTTATACTGTTCCCTGCATTTGTGTGCAATGTGTCATCTCAGAGAACACATCCCTCTA------GCCCATCAGGGCAGAAGTGTTACCCTCACATATCTTTGTAATGTTCTATAATGGGGGTCA-CTTCCCAGAGTGGTTTAGCCTTTCA s panTro1.chrUn_random 177453471 1022 - 240967748 TTCAGGGGGAGCAGGAAAGGAGGGG---GCTCTTTCT-CACAGGGGCAGGTTGTAAGGCATTGGAAACCTGGCGGGTATGTCATGTTCATA-CCCAGGTCATGGCTGGTGGAATAAAAAGTTGAGCATTTGTGGACTCAAGTGTGTCTACTCAGATGTGAATCCCAAGGCCTTAAGCTGTCCTCGGGTTTCCTCATTGGCTGGGGGTCTATGCGGATACTCCTATGTTCCTGATCTAGGAAACAGAATTTCTAATGGAGATGTCACCTGGTGGTAAAAACAAAGGAGACAATTAAtttttttttcttttttctttttttttttttttCTGCTTCGCTGCCGGGAACACTCTTTGTAGAGTTTCATT---AAAACTCATTGAGCAGATATTTGATGGGTTCAAGTCCCCCATCTCCTTGGACAACTGGCAGGTTCACCACACCCCCAAGCATGGCATACAGTGAGTTACGGTGAGAGCAGGCACATGGGGGTCTCTACAGACAGGGGTCTGACAAAACCAGGATGGGCCCAGGATCCAGACCCAAATATGGAATTTCCCTGGGCTGTCTCT-TAGGGGATTTCCATGAGTGTCCCAAAG--ATCTGCCTC-CCAAAAATCTAGCCTTAACTAGTCCCAAAGGCAACTTGGTTAAGTGTAAAGTCCCTTTTTACATTCTTGTAGAAATATCAGAGAAGGCCTT---TGTGTTG------------------------TTTTTATTTTATACTAGGC----TGTATTTATTCATGTTACTACAGTTTGTATGGTTTTAATTATTCCCCCCTAGTATCACCTGTAGCAGGCAGCTTCACGGCACTGCCAGACCTTCTCCAAGACTTGA-AAGCCACCACTATCACTAATACTCTAGAAAAATAGGGAAGAGTTTACATGAAAAG------GGGATTATATTCGTCCCTGCATTTGTCTGCAATGTGTCATCTCAGAGAACACATCCCTCTA------GCCCATCAGGGCAGAAGTGGTGCCCTCACATATCTTTGTAACGTTCTATAATGGGGGTCA-CTTCCCAGAGTGGTTTAGCCTTTCA s canFam1.chr6 76037077 946 - 79106041 GGAAGAGGGGACAGAAAATGAGGGACATGCCCTTCCTGGGCAGAAGCAAGGTGCCATGTGTTGAAAGCCTGGTACATCTTTCATGCTCATACCCCAGGTCGTAGCAGG-------ATAAGACGAGTG-CTAGGGAT-GAAGTTCAGCTACCTATATGGTATTCATGAGCGCTTGAGTT-TCATCTGGCTTCCTCCTT-GCTGAATGTCTTTTCAGCTGCCCCCTTG-GCCTGAACTGGAGAACACAATTTCTAATGGGGGTGTCCCCTTGTGGTGATGTCCAGGGAAGGCCTTAA------TGTCTCTTGGC-----------------------CTG----------TATTTGCAGAGCTGCACCCAGGAGA-TCTTTGAGGAGCTAGTCTGCAGCTTCAACTACTCTGGATCCCTAGACAAGTGTCAGGTGCACCAGGTCCCTGC-------------TGCTCTGAGGTGAGAAGGGA---AGAGGGTTCTCCACACCTAGGGCTCCCATGCAA----------------ATATGGGGACAAAGCTGGGTCCCCCCCATAGTATTTTTACAAGAGTGCTCCACAGG---CCCAAAGTAATCTGAATCTCCACATCTCTGCCACCAGCTA-----------------------TGTGAAGATACCTTTCACATTA-TGTTGGAATGGTAAAGAACATATTTAATGTTTTGGGGAGATTTTTTGGTCTGTTTTACTTTTTACTTTTCACAAGGCCAAGTGTATCTTTGCACTTTACTACTGTT----TTATTTCACCTACTCGCCCCAGATACC-TGTGTAGAACTCAGCTCCATTGTCCTTGCAGAACTTCTCCAAGCCCTTACAAACCATCAC----------ACT-------AAAAAGAGTGATTTAACACAAGAGAAAGTGTGGGACGAAGCCATTCTATATTTTTCTCTGCAACATGTCATCTCTCAGAATACATCAAATCATTGTAGGACCAACAAGTCACAATCTCTGTCCCTATATGTCTTCATAATATTCCAGAAAGGAGGTCATCTGCCTACTGTAATTTAGCATTTCA a score=72904.0 s hg17.chr17_random 2228733 865 + 2618010 GTGACtattatttctgatcaaaatggaataaaactagaaatgaataacagaagaaaacaaaaatagcaacatatatatggaaattaaacaactcacttttgagcATGCTcatgtttaagggttgtaagacttgatattatgaagaatgctcatgatgcctaaagc-gagttacagattcaat-gtaat-cccttttaaattagcaatttttttgaaatagaaaaaggaaccaacaaa-ttatgtggaatgtcaagcgaccataaagagcccaaaaatgttt-aaaaaaaaaacaatgttagcggcctcaacttttctgatttcaaagcacattacaaagcaacagcaatgaaaacagtttgtttctagcataaagacagacaatttttccaataaaacagaaggtagcacagacgtaaacctcgcacatATGAGcaaatagttatttgcatacccatattcgttgcagcattattcagaaaggccaataggtgaaagcaacacaaactttcctcatagaatgaataaataaatataatttgtaatacaaaagtaatggaatattactcagcttttaaaggcagaaaatcttgtagcatccacaataaagagaaatcttgagaacatgatgctaagtaaaattagtcacaataaaacagatactctatgattctacttatatgtaatatctaaagtattgaaacttagaaccagaaaatagaatgatttttatcatgagccaggtggtaaggacaatgggtagttgtcatttcatgtgtactgagtttcagttttgcaaaagaaaaaagtttt-caaatatgttgcaaagcaatgtaaatacattaacatgactgaactgtataagaaaaaa s panTro1.chrUn_random 177454493 860 - 240967748 GTGACtattatttctgatcaaaatggaataaaactagaaatgaataacagaacaaaacaaaaatagcaacatatatatggaaattaaacaactcacttttgagcATGCTcatgtttaagggttgtaagacttgatattatgaagaatgctcatgatgccttaagcggagttacagattcaatggcaatccccttttaaattagcaatttttttgaaatagaaaaaggaaccaacaaatttatatggaatgtcaagcgaccataaagagcccaaaaatgtttaaaaaaaaaaacaatgttagtggcctcaacttttctgatttcaaagcacattacaaagcaacagcaatgaaaacagtttgtttctagcataaagacagacaatttttccaataaaacagaaggtagcacagacgtaaacgtcgcacatATGAGcaaatagttatttgcacacccatattcatt---gcactattcacaaaggccaataggtgaaagcaacacaaactttcctcatagaatgaataaataaatataatttgtaatataaaagtaatggaa--------agcttttaaaggcagacaatcttgtaccaaccataataaagagaaattttgagaacatgatgctaagtaaaattagtcacaataaaacagatactctatgattctacttatatgtaatatctaaagtattgaaacttagaaacagaaaatagaatgatttttatcaggagccaggtggtaaggaaaatgggtagttgtcatttcatgtgtactgagtttcagttttgcaaaagaaaaaagttttacaaatatgttgcaaagcaatgtaaatacattaacatgactgaactgtataagaaagaa a score=11800.0 s hg17.chr17_random 2229598 65 + 2618010 tgttaaagattctaaattttatgttatgtatttttaccacaatcgaaaTTAAAA-ATGACACCCAA s panTro1.chrUn_random 177455353 65 - 240967748 tattaaagattctaaattttatgttatgtatttttaccacaatcgaaaTTAAAA-ATGACACCCAA s canFam1.chr5 26672530 66 - 92064832 tggttaagatgataaattttatgtcatgtgttttgaccacagttaagaaTAAAATATAACAATTAA a score=2720.0 s hg17.chr17_random 2229663 32 + 2618010 TGGCTAAGAGAgatggctcatgcctgtaatct s panTro1.chrUn_random 177455418 32 - 240967748 GGGCCAAGAGAGATGGCTCATGCCTGTAATCT a score=22186.0 s hg17.chr17_random 2229695 257 + 2618010 cagcactctgggaggctgaggcatgcagattacttgaggccatgagttcaagaccagcctggccaacatggtgaaaccccagctctatgaaaaacacaaaaattaaccaggcgtggtggtgcacacttttaatgccagctactcaagaggcagcagctggagaattgctttaacctgggaggtggaggttgcagtgagccaagattgtgccactgcactttggcgacagggtgagagtctgtcaaaaaataaataaa s panTro1.chrUn_random 177513353 257 - 240967748 cagcactttgggaggctgaggcatgcaggttacttgaggccatgagttcaagaccagcctggccaacatggtgaaaccccagcttcatgaaaaatacaaaaattagccatgcgcggtggtgtacaactttaatgccagctactcaagaggcagcagctggagaattgctttaacctgggaggtggaggttgcagtgatccaagattgtgccactgcactttggtgacagggtgagagtctgtcaaaaaaaaaaaaaa a score=504.0 s hg17.chr17_random 2229952 22 + 2618010 TAAGTAAA----GACACCCGAAGAGA-- s panTro1.chrUn_random 177513610 26 - 240967748 aaaaaaaaaaaaGACACCTGAAGAGA-- s fr1.chrUn 323272708 23 + 349519338 TAAACAAT----AATACCT-AAAAGATA a score=13231.0 s hg17.chr17_random 2229974 56 + 2618010 GAGAGTTACAAAGTTTTTGAAAAATTATCTTCAAATCGCATAAGTCTTTCTTTCAC s panTro1.chrUn_random 177513636 56 - 240967748 CAGAGTTACAAAGTCTCTGAAAAATTATCTTCAAATCGCATAAATCTTTCTTTCAC s canFam1.chr5 26672605 56 - 92064832 TAGAGGTATAAGAGTTTGTAAAAATTACCTTCAATTCAAAAAAGTGTTTCTCTCAC s fr1.chrUn 323272731 52 + 349519338 CATAGTTATGATAGTTTT---AAATTATATTCAAAAC-CAAATGTGTTTCTCCCAT a score=23055.0 s hg17.chr17_random 2230030 114 + 2618010 ACTAGGATAATATAAAC---------AATA-GATGTTGAAATTAAGACAATTTCCATGATTACTCACTTAGACAGAAT----CAATTATTGGC--CATCAAACAAGAAGA-AAATGCAC-----AAGTCATAAACA s panTro1.chrUn_random 235757551 114 - 240967748 ACTAAAATAATATAAAC---------AATA-GATGTTGAAATTCAGACAATTTCCATGATTACTCACTTAGACAGAAT----CAATTATTGGC--CATCAAACAAGAAGA-AAATATAC-----AAATCATAAACA s canFam1.chr5 26672661 133 - 92064832 AC--AGAAAATATAAATTTATCAATAAATA-GATGATGAAATTAATTCTATTTTTATGACAACTCACCTAGACAGGATAACACAATCATTGATAACATTAACCAGCAAAAGAAACGAACAAGGTAAGTCATGAACA s fr1.chrUn 323272783 128 + 349519338 GCAAAAATCACATATATTCACAAATTAATAGGATGTTGAAATTACAAGAATTT-CATGACTTCTCATCTACACAGGATTAAAAAACTATTCAC--AACAAACCTTCACAACAAATATAC-----AAGTTATAAAAA a score=27003.0 s hg17.chr17_random 2230144 132 + 2618010 -AAATAGGGGCAATATTTATACAAGCAAA------CAAACAATTAAATCATTATATTAACAAAAGACCATAGGGATGGTTCATATTT----TTTGCCTCACACTGTCTTAAGGTGTACAGATTTGAATATTGTCATAGAAAAT s panTro1.chrUn_random 177513692 138 - 240967748 -AAATAGGGGCAATATTTAAACAA---AATAGGGGCAAACAGTTAAATCATTATATTAACAAAAGAC-ATAGGGATGGTTCATATTTGACTTTTGCCCCACACTGTCTTAAGGCATACAGAGTTGAATATTGTTATACaatat s canFam1.chr5 26672794 135 - 92064832 -AAGCATGGGTAACatttatttatataga------taaatatatatataaCTTTACTGAAAATAGAC-ATACGGCTGATTCATACTTGAATTAAACCCCATTTTGTCTTAAAATGCATTGAGTTGGAAAATGTCATAAAAAAA s fr1.chrUn 323272911 128 + 349519338 AAAACAAGGATAACATTTTTCCAGGCAAA------TAG------AGATAATTCTATTGG-AAAAGAC-ATATGGCTAATTCATATATGAT-TTTGCTCCACAATGTCTTAAATTGTACAAAGTTAAATATTGGCATGCACAAT a score=8127.0 s hg17.chr17_random 2230276 60 + 2618010 TATATTATATAAATTCAAA---CTAAAAACAATAAACTGATGTAAGGTGCCCTACCCTAAAAC s panTro1.chrUn_random 177513830 60 - 240967748 tatattatataaattaaaa---cttaaaacaataaactaatataaGGTGCCCTACCCTAAAAC s fr1.chrUn 323273039 61 + 349519338 --TAGAATATATACTAAAAAATCAAAACACAATTAACAGATGTGTTGTGACATACCCTCAAAT a score=5794.0 s hg17.chr17_random 2230336 83 + 2618010 ATGAAACACAGAAATGCAAAATT-GCAAAACAAACTTAAAAGAAACCTT---CCCCGAATTCTTACTTGAATAATGTAATTCAAAAT s panTro1.chrUn_random 177513890 87 - 240967748 ATGAAACACAGAAATGTAAAATTTGCAAAACAAAGTTAAAAGAAACATTAACCCCCAAATTCTTATTTGAATAATGAAATTCAAAAT a score=89752.0 s hg17.chr17_random 2230419 755 + 2618010 CATAATAAATAGGTAGAAAGTAAAAACACAATTAACTGCTGTGAGACAGCCTACTCTAAA-----AAATACAGAAACATAAA-TTCTAAAACATAATTAAGAGAAACTTTGATCTATAAAATCCTGAAT-AAACATA---GTGTCCAACTGAAAAAGAATCCTAGGTAACTACAATTTTCAACTCTTCCTTTGAATCCATAAAAAGTATAAATTTTGAATTATTTGGATACAATTA--AGGCAACAACATTTCAAAGAAACCATATTATAATTATTAAAAAGAGATGTGATGAGAAAGTTTTAAGGAATAAATATTTAAGTAATACTAGAGAAAGTTTTAAATTATGCTACTGAT---GCATTGCTTCTTTCCTTACACAAAAGGGTAAGGCTGTAATCTAGCCTTTAATAG---------------------------------------------------------------------------------------------AAAGGTCTTACATTTTTACATATGGTAACAATATAAATATTGT-AAATACAGTATAAAACATTGACAGATAAAATAAAAACTGGAAATAAATTGTACTATTAGTCAAATAAAAGTTGGGAAAA-CTGGAAGAAAATGCTAATAGTAATATTGTGCCTAGACTCAA-TTAAACATACAAGCCaaatattttaataatt----aattatataattGATAC---------------ATAACATATACATTTGAGCATGCTGTTTTACAACTTCTCAAACTGAAATTACAGAAAAATGTGACACATGATAATTCAGAAAGTGAAAACACAGTCATAGTAATCTTCATATTAAAGAAAACAGAATCATAAAATAATAAGTGAGAA s panTro1.chrUn_random 177513977 760 - 240967748 CATAATAAATAGGTAGAAAGTAAAAACACAATTAACTGATGTGAGACAGCCTACTCTAAA-----AAATACAGAAACATAAAATTATAAAACATAATTAAGAGAAACTTTAATCCATAAAATCCTGAAT-AAACATA---GTGTCCAAATGAAAAAGAATCCTAGGTAACTACAATTTTTAACTCTTCCTATGAATCCATGAAAAGTATAAATTTTGAATTATTTGGATACAGTTA--GGGCAACAACATTTCAGAGAAAACACATTATAATTATTACAAAGAGCTGTGATGAGAAAGTTTTAAGGAATAAGCATTTAAGTAATACTAGAGAAAGTTTTAAATTATGCTAATGAT---GCATTGCTGCTTTTCTTACACAAAACGGTAAGGCTGTAATCTAGCTTTTAAGTG---------------------------------------------------------------------------------------------AAAAGTCTTACATTTCTAAATATGGTAACAATATAAATATTGT-AAATACAGTATAAAATATTGACATATAAAATAAAAATTGGAAACAAATTGTATTATTAGTCAAATAAAAGTTGGGAAAAACTGGAAGAAGATGCTAATAGTAACATTGTGCCTAGAGTCAA-TTAAACATACAAGCCaaatattttaataaattataaattatataatttataC---------------ATAATGTATACATTTGAGCATGCTATTTTACAACTTCTGAAAG-GAAATTACAGACAAATGTGACACATGATAACTCAGAAAGTGAAAACACAGTCATAGTAATCTTCATATTAAAGAAGACAGAATCATAAAATACTAAGTGAGAA s canFam1.chr5 26672929 843 - 92064832 CATAGTACATAGGTAAAAGACAAAACCACAATTAACCAATGTTGTGGAAGCTACTATTAAAAGACAAGTATATTGTTATGGAATTGCAAAACAAGAATAAGGGAAAATTTAACCCCCAAAATTCTAAATAAAACACAGATGTATCAAGTATCAAAGAGATCCTATAAAACTACTATTTTAAATTATGACTGTGTGCCCATGAAAAGCAAGTGTTTTGAA-TATTGGCATGTGTTTATGTGGCAGTAAAACTGGGCAGAAAATTCATTACACTCAATCATAAAAGCTCTAATGAAG----TTTAATGAATAAGCATTTAAATTACATTAGAGAAATTC----ATTATGTTATTAATATAATATTGCTCCTACTCTTACACAGAATGTAAAGACTGTAATCCATCCCTTAGATGCAAAAAATaaaaaagagaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaCTAAACAAACAAAAAAACCTCTTCATTCTGAATAAAGGAATACCATGAAAGTTGTAAAATATGCTGAGAATCGCTGATACATA----AACATTTGAGATTAAGTTACACCACGGTTCAGATACATTTCGAAGAAA-GTGGATGATAATTCCAATAATTACTTTTTGTCTGAAGTAAACCTATATTTATGAACCAAACATTTTAATAAAT-ATGAAGTGCCTACTAAGTACCCTGGCTCACTTATAAAAATGTGTACATTCCAGCACATTCTATCAGAACTTTTGGATCTAAAATCATAGACGAATTTCACATAAGTTCAATCAGAAAGTGaaaac-----------------------aaaaaaaaaaaaa----aaaaaagaaaGTGAAAA a score=15760.0 s hg17.chr17_random 2231174 161 + 2618010 ATAAGGTAATAATTGTGAATTCAATATATGTTGAA---CAATATTCTAA--------TTTCTCTTACGGAAAAAGTTT-TTGTAAGAAATCTGTAAAATGAGTACTTACAATAAACCATCCTACAGTAGAGGCTGTTG-GCATACAGTGTTTAAATTTCTATGATTAGGTCCTA s panTro1.chrUn_random 177514737 162 - 240967748 ATAAAGTAATAATTGTGAATTCAACATATGTTGAA---CAATATTCTAA--------TTTCCCTTACGGAAAAAGTTTCTTGTGAGAAATCAGTAAAATGAGTACATACAATAAACCATCCTACAGTAGAGACTGTTG-GCATATAGAGTTTACATTTCTATGATTAGGTCCTA s canFam1.chr12 34540654 159 - 75455811 AT-TGGTAGCAATTGACTATT----ATATGATAAAAGTCTAAGTTCTAAATGTTCTTGTTCTCTTATGGCATTACTTT-ATGTAGGAATTC--TAGGATGTA-------AACAAATTATTTTACTACTGAGAAATTGGAGCACATAGAGTTGACATTTTTAGTGTTAGTTCATG a score=14767.0 s hg17.chr17_random 2231335 143 + 2618010 CTAAGGAAAAGaaaattttaaaataaaataattaGATTTTCCTATTTAATAAGATAATTTTTGCCT--ATAAAGTTTTTCAGTCTAATTTTTTTTGTAGAATTAGGTTTT-AGCCTTCATAAAACTTGACATTATGAAGCAGAAAA s panTro1.chrUn_random 177514899 142 - 240967748 CTAAGAAAAAGGaaattttaaaataaaataattaGATTTTCCTATTTAATAAGATAATTTTTGCCT--ATAAAGTTTTTCAGTCTAATTTTCTTT-TAGAATTAGGTTTT-AGCCATCGTAAAACTTGACATTATGAAGCAGAAAA s canFam1.chr5 26673832 138 - 92064832 TTAAAAAAAATAAGGT-----GATGAGGCACTTGGGTGGCTCATTTTAGGGAGATGTTCTGTACTCTGATGAAATCGTGGACTCTGAATTTTG---CACAGTGATGTCTGAAGCCCCCATTAGATTGGAGATAATAAAACAGAAAA a score=38462.0 s hg17.chr17_random 2231478 172 + 2618010 CAGGTGTCAT-CTGTCTCTGTTGTTCCTGGAATTTCTAACCCAAATGCCAATTCCTCCACAACTCCCCTCACACACTTCTGAATTGAAGCA-CAACAGATTTATTAAAAATGGC---ATAACA-GCGGTCTCCAGAAATGTGCAGAGATTTTCCCAGATCCCTA---AAAGGAA----TGACAAA s panTro1.chrUn_random 177515041 174 - 240967748 CAGGTGTCATGCTGTCTCTGGTGTTCCTGGAATTTCTAACCCAAATGCCAATTCCTCCACAACTCCCCTCACACACTTCTGAATTGAAGCAGCAACAGATTTATTAAAAATGGC---ATAACA-GCGGTCTCCAAAAATGTGCAGAGATTTTCCCAGATCCCCA---AAAGCAA----TGACAAA s canFam1.chr5 26673970 173 - 92064832 CATGTGGCAT-CTGTCTCCAGTGTTCCTGAGATTTCTGAACCAAATCTCAGTATTGTCACA---CCCCTCAGAGACTTCAGACATGAAGCCAAACCAGAATT----TAAATGGCTTTAACACA-GAGGTCCTCAGCAATGGGCACAGATTCTTCCAGATGCCCA---GAAGGAAGTGGTGGGAAA s fr1.chrUn 307421890 173 + 349519338 CAAGTAACAT-CTGTCATTGATGTTCCTGAGATTTCTGAAACAAATCTTAATGTCACCACT---GCTCTCACACACTTCAGATATGATGGAAAAAGAAAACT-TCAGAAATGAT---CTAACATGCACTTCCTCAAAATACTCAGAGATATTCTTATATCCCCCCTTGAAGCAA----TGGAAGA a score=2668.0 s hg17.chr17_random 2231650 18 + 2618010 CTATTcagatcatttagg s panTro1.chrUn_random 177515215 18 - 240967748 CTATTcagatcatttagg s canFam1.chr5 26674143 18 - 92064832 ACATTCAGTTCCCGCAGG a score=7157.0 s hg17.chr17_random 2231668 105 + 2618010 ttctcacaagattctgggaggacttcggctttcagtgtgaattcactggaagattctaagagagaggaAGAGAGAGAGAAtgtgtgtgtgtgtgtgtgtgtgtgt s panTro1.chrUn_random 177515233 92 - 240967748 ttctcacaagatactgggaggactttggctttcagtgtgaatgcactggaagattctaagagagaggGGGAGAGAGAGAATGTGTGTGTGTG------------- a score=11242.0 s hg17.chr17_random 2231773 85 + 2618010 gtgtgtgtgtTGAAATCAGAACCCCACCTTATGTGTTTATTGTGGAATTTGGAAATGAAAGCCTAAAGC-CCAAAATTAAAATCAC s panTro1.chrUn_random 177515325 73 - 240967748 ------------AAATCAGAACCCCACCTTATGTGTTTATTGTGGAAATTGAAAATGAAAGCCTAAAGT-TGAAAATTAAAATAAC s canFam1.chr9 14289290 86 - 53642819 GTGTGTGTGTTGAATCCAGAACTCTGGCTTCTGTGCTCAGGATGGAATTTGTAAGTGGAGGCCTGAAATGTGAAAATCGGGTTCAC a score=0.0 s hg17.chr17_random 2231858 1 + 2618010 A a score=91.0 s hg17.chr17_random 2231858 1 + 2618010 A s panTro1.chrUn_random 177515398 1 - 240967748 A a score=3332.0 s hg17.chr17_random 2231859 4 + 2618010 CATG s panTro1.chrUn_random 177515399 4 - 240967748 CATG s mm5.chr11 74271662 4 + 121648857 CATG s rn3.chr10 61954189 4 + 110733352 CATG s canFam1.chr9 14289376 4 - 53642819 CGTG a score=4588.0 s hg17.chr17_random 2231863 64 + 2618010 ATAGCAC-GTTGCAAACTGTTTT------------CTGTGCTAGATGGGTCGTTCTAG---GGTGTAGGACCCTGGAAAC s panTro1.chrUn_random 177515403 64 - 240967748 ATAGCAC-ATTGCAAAGTATTTT------------CTGTGCTAGATGGGTCGTTCTAG---GGTGTAGGACCCTGGAAAC s mm5.chr11 74271666 54 + 121648857 AAAACAC---TGAAAA----TCT------------CATTGCAAGCCAGGTTATTCCA-------ACAGGGCTATAGTAAT s rn3.chr10 61954193 56 + 110733352 AAAGCAC-TCTGCAAA----TCT------------TGTTGCAAGTCAGGTTATTCTA-------ATAGGGTTATAATAAT s canFam1.chr9 14289380 65 - 53642819 GTAGCACCATGGCACACT--TGT------------CCATGCTAGATAGGTTGTTGCAGCA-GGGAGTGGGCCCTGCTAAC s danRer1.chr15 18348880 75 + 23217395 ATTGTAC-TTTACTAACTGTTTTAAAAATGTGAACTTTCGCTTG--AGTACATTTTAGTGTTATCTAGGGCTAT--TAAT a score=180137.0 s hg17.chr17_random 2231927 177 + 2618010 ACCGTTTTCCCCTCCTTCCGGAAAGAGCTACTCACACTGCTCAAAGCCTGCATCCACATGTACCATGTCAAAGACCAGCTCAAGAGCCTGGACCCATATGCCACCTTCAGCAGGGTTGACTGCAGCTCCTTGTTCTTCCTGAGCATCTTCTCCAATGGTGACCTGAGAGTTGCG--------GGA s panTro1.chrUn_random 177515467 177 - 240967748 ACCCTTTTCCACTCCTTCCGGAAAGAGCTACTCACACTGCTCAAAGCCTGCATTTACATGTACCATGTCGAAGACCAGCTCAAGAGCCTGGACCCATCTGTCACCTTCAGCAGGGTTGACTGCAGCTGCTTGTTCTTCCTGAGCATCTTCTCCAATGGTGACCTGAGAGTTGCG--------GGA s mm5.chr11 74271720 172 + 121648857 GC---TTTTCCTTCCT--CTGGCAGAGCCTTACACGGTGCGTGAGGCCCGAATCCATGTGCGTCATGTCAGAGACCTCCTCAAGAGCTTGGACCCATCTGATGCCTTCAATGGAGTTGACTGTAACTCCTTGTCCTTCCTGAGTGTCTTCACTGATGGTGACTTAGGAGGTGCG--------GGA s rn3.chr10 61954249 173 + 110733352 GC--TTTCACCCTCCT--CTGACAGAGCCTTACACAGTTCGGGAGGCCCGAATCCACGTGCGCCATGTCCGAGACCTCCTCAAGAGCTTGGACCCATCTGATGCCTTCAATGGAGTTGACTGTAACTCCTTGTCCTTCCTGAGTGTCTTCACTGATGGTGACTTAGGAGGTGCG--------GGG s canFam1.chr9 14289445 177 - 53642819 ACTCTGCCCCTCACCCTCCCGACAGAACCATACACAGTACGTGAGGCCCGCATCCACGTGCGCCACGTCCGAGACCTGCTCAAGAGCCTGGACCCATCTGATGCCTTCAACGGGGTTGATTGCAACTCTTTGTCCTTCTTGAGCGTCTTCACTGACGGCGACTTGGGAGGTGCG--------GGA s fr1.chrUn 264579314 183 - 349519338 ATCATCTTGTCTTCAT--TCTCTAGAACCCTACACAGTGCGTGAGGCTCGCATTCATGTGCGTCACATCAGAGATCTTCTGAAAAGTTTAGACCCTTCCGACGCCTACAATGGAGTGGACTGTAACTCACTGTCATTCCTCAGCATCTTCACCGATGGAGACCTTGGAGGTGCGTTACCCTCTGA s danRer1.chr15 18348955 173 + 23217395 --GCTGTTGTGCGTTT--CCTGTAGAGCCCTACACAGTGCGTGAAGCTCGCATTCATGTCCGTCACATCAGGGACCTGCTGAAGAGCCTGGATCCATCAGATGCTTATAATGGAGTAGACTGCAACTCCCTCTCCTTCCTCAGCGTCTTCTCAGAAGGAGATCTTGGAGGTCAG--------TGA a score=110607.0 s hg17.chr17_random 2232104 295 + 2618010 GGCATTGGGGCCAGGA-TTGAACAGAGGAAAAAGGAGCACGGAGGCCAGGTGCTGAGGACCAGGCCATCTTACCTGGAGAGTTCTGGCCCTGAGACATCCAGACCAACATGACGTTTAGGTGCAGACAGCTGGCCCTGGGTGGCCCTGTGCTGATCACC--GGCCTCGGCCCCTCAAACAGTGGGAAATGGAAGAA---TGGCTTGGAAATGGGCCCTGTCGACTGTGTGTCATCTGAGCACATTCTCCCAGGGGCCCAAGAAGGGCCATCGTGT---------CTCCAGAACCAGAACTGGAAGGT-AAA s panTro1.chrUn_random 177515644 296 - 240967748 GGCATTGGGGCCAGGA-TTGAACAGAGGAAAAAGGAGCATGGAGGCCAGGTGCTGAGGACCAGGCCATCTCACCAGGAGAGTTCTGGCCCTGAGACATCCAGACCAGCATGACATTTAGGTGCAGACACCTGGCCCTGGGTGGCGCTGTGCTGATCACC--GGCCTCGGCCCCTCAAACAGTGGGAAATGGAAGAA---TGGCTTGGAAATGGGCACTGTCGACAGTGTGTCACCTGAGTACATTCTCCCAGGGGCCCAAGAGGGGCCATCGTGT---------CTCTAGAACCAGAACTGGAAGGTGAAA s mm5.chr11 74271892 276 + 121648857 AAAATTGGCACTTGGACTTGTGCAGAGGGACAAAGGCCTGAAGGGCTGGGGGCTGGGGGTT--------------------TGCTGAAGTTAAGA----CAAGCCAGAGATACATTAAGTAACAGAAA--------TAGTTGGTTCCTGGCTGACCACCAAGCCTTGGGTTCCTCAGACAGTGGGAAGCGGAAGAA---AGGCTTGGAGATGGACCCCATCGACTGCACCCCACCTGAGTATATCCTGCCGGGGAGCCGGGAGCGGCCTCTCTGTCCCCTGCAGCCCCAGAACCGTGACTGGAAGGTAAGA s rn3.chr10 61954422 271 + 110733352 AAAATTGGCACTTGGACTTGTGCAGAGGGACAA---------AGGCTGGGGGTTGGGG---------------TGGGAGCTTGCTGAAGTCAAGG----CAAGCCAGGGACACATTAAGTAACAGAAA--------TGGTTGGTTCCTGGCTGACCACC-AGCCTTGGGTTCCTCAGACAGTGGGAAGCGGAAGAA---AGGCTTGGAGATGGATCCCATCGACTGCACACCACCTGAGTATATCCTGCCAGGGAGCCGGGAGCGGCCTCTGTGTCCCCTGCAGCCCCAGAACCGTGACTGGAAGGTAAGA s canFam1.chr9 14289622 289 - 53642819 GGCATTGGGACTGGAGCTTGGGCAGAGGGACCAGGGGCC---AGGGAAGGGGCCAGGGACAAGGCCTTCCCACCATGAGGGGGCAGGGCTGGAGTCATCCACACTGG-----CATTGGTTTGC----------CCCGGGGTGGCCCTGTGCTGACCACC-GGCCTCGGGTCCCTCAGACAGCGGGAAGCGGAAGAA---GGGCTTGGAGATGGACCCCATTGACTGCACACCACCTGAGTACATCCTCCCTGGGAGCCGGGAGCGGCCATTGTGTCCCCTGCAGCCCCAGAACCGTGACTGGAAGGTAGTA s fr1.chrUn 264579497 199 - 349519338 GATATT-----------TT------------------------------------------------------CTTGAGCAGTCTTTACATGTGA---------TGGGGATACA----------------------TATCTTCTCCTTGTTTGATGCTG---------------CAGATAGTGGCAAGCGTAAGAAAAGAGGCAACGAGCTTGAGCAGATTGACTGTACCCCTCCAGAGCACATTCTGCCCGGCAGCAAAGACCGCCCTCTGGTGCCTCTCCAGCCACAGAACAAGGACTGGAAGGTGAA- a score=2404.0 s hg17.chr17_random 2232399 29 + 2618010 CTGTCAGGG-GGGACAAGGAAGAGGGTCCT s panTro1.chrUn_random 177515940 29 - 240967748 CTGCCAGGG-GGAACAAGGAAGAGTGTCCT s mm5.chr11 74272168 27 + 121648857 CT-TTAGAA-GCATCAAGGAAGTAAGACC- s rn3.chr10 61954693 23 + 110733352 CT-TTAGAA-GCATCAAGGAAGA----CC- s canFam1.chr9 14289911 28 - 53642819 CT-CCGGAGCAGAGCCAGGGGGCAGGTCT- a score=160579.0 s hg17.chr17_random 2232428 227 + 2618010 CAG----TTGGGT-----GGAGGGTCTCACA-GCAAGACGCCTGGCTTA--ATCAAACTTGGCCAT--------TCC--TGAAGCACGTTCAGTGACTAAAAGTGCCTACCATGAGCAGCTGGAACCCACTCCCTGAGAGCTGCAAGATCCATGGGGACCTCATGTACCTGTTTGTAATTACAGCCAAGGACCAGCAGCAGGCAGCATTACTGCATCCAC-ATGGGCTTTTGCTGGAACCAGTAAGTCTC s panTro1.chrUn_random 177515969 227 - 240967748 CAG----TTGGGT-----GGAGGGTCTCACAAGCAAGACGCCTGGCTTA--ATCAAGCTTGGCCAT--------TCCCCTGAAGCACGTTCAGTGACTAAAAGTGCCTACCATGAGCAGCTGGAACCCACTCCCTGAGAGCTGCAAGATGCATGGGGACCTCAAGTACCTGTTTGTAATTACAGCCAAGGACCAGCAA---GCAGCATTACTGCATCCAC-ATGGGCTTTTGCTGGAACCAGTAAGTCTC s mm5.chr11 74272195 217 + 121648857 -------CTGGTG-----GGAGGATCCCAAA-------AGTCCTGTCTC--CTCATGTTTGGCCAT--------TTG--TGCAGCCCCTGCAGTGTCTGAAAGTACTTACCATGAGTGGCTGGAACCCACCTCCTGGGAACCGCAAGATGCATGGGGACCTCATGTACCTGTTTGTGATCACTGCTGAGGACCGGCAA--GTCAGCATCACTGCATCGACGAGGGGCTTCTACCTGAATCAGTAAGTCTT s rn3.chr10 61954716 217 + 110733352 -------CTGGTG-----GGAAGATCCCAAA-------AGTCCTGTCTC--CTCATGTTTGGCCAT--------TTG--TGCAGCCCCTGCAGTGTCTGAAAGTGCTCACCATGAGTGGCTGGAACCCCCCTCCTGGGAACCGCAAGATGCATGGGGACCTCATGTACCTGTTTGTGATCACTGCTGAGGACCGGCAA--GTGAGCGTCACTGCGTCCACACGGGGCTTCTACTTGAATCAGTAAGTCTC s canFam1.chr9 14289939 230 - 53642819 -------CTGGCGGGGCAGGGGGCTCCCCCA-CCTAGAGGCCCGGCCCCCACTCACACTTGGCTAT--------TCC--TGCAGCCCCTGCAGTGCCTGAAAGTGCTCACCATGAGCGGCTGGAACCCACCCCCCGGGAACCGTAAGATGCATGGGGATCTCATGTACCTGTTTGTGATCACAGCTGAGGACCGGCAA--GTCAGCATCACGGCATCCACGCGGGGCTTTTATCTGAACCAGTAAGTCCC s fr1.chrUn 264579741 237 - 349519338 CAGTGGATTCATG-----GGTATCTTTTGCA-GAAATAAATTAAAATT---CTAAATCTTGTTCATCTAACTCCTCC--AGCAGCCTATGCAATGCCTGAAGGTCTTGACTATGAGCGGCTGGAACCCTCCCCCTGGAAACAGGAAGATGCATGGTGACCTCATGTACTTGTACATTGTGACTGTGGAGGAGCGTCAT--GTCAGCGTCACTGCCTCTACACGTGGCTTCTACCTCAACCAGTCAGTATC a score=98410.0 s hg17.chr17_random 2232655 426 + 2618010 --AGCCAGCCCCTCCCAGGCTCCTGGGATG-CCACTTGTTCTGGGTCTGTGGACAGATAACCAGGATACTTGCTCAGTGTCCA-TCCACTCCTTGT-GGTCTGAAGCCTATCGC-TCAACCCTAGCCCCACCAGACC-TGCTTCCTAAGCCATTCC-------------------------------TCATGC--------------------------------------CAGAAGGAAAGGCAATGCCTTTGTCCCACAGCCCCTGCCTTGTGTCATGTCATGTGGGGGTATGGAATGAATCG-TCAGCCGAAACTCCAGTCCTTCTGCCTGAGAAATCTAT---------CCCCTCTGTCT--GAGTTACCCT----CTAGGGAGCTGTCAGTGGGAGAGAGAGCAGCTGTGGAAGAGAGTCCCACCTGCTTCTGTTTGACT-TCAGGGCAGCCTCTCAGGGCA--AGAACCCAGAGCAGGTGGAGGCCTCACAGAAG-----CCTGTGGCAGGGCTCTGGGC s panTro1.chrUn_random 177516196 407 - 240967748 --TGCCAGCCCCTCCCAGGCTCCTGGGATG-CCACTTGTTCTGGGTCTGTGGACAGATAACCAGGACACTTACTCAGTG------------------------AAGCCCATCGC-TCAACCCCAGCCCCACCATACCCTGTTTCCTAAGCCATTCCC------------------------------TCATCC--------------------------------------CAGAAGGAAAGGCAATGCCTTTGTCACACAGCCCCTGCCTTGTGTCATGTCATGTGGGGGTATGGAATTAACCGGTCAGCCTAAACTCCAGTCCTTCTGCCTGAGGAATCTGT---------CCCCGCTGTCT--GAGTCGCCCT----CTAGGGAGCTGTCAGTGGGACAGAGAGCAGCCCTGGAAGAGAGGCCCACCTTCTTCTGTTTGACT-TCAGGACAGCCTTTCCGGGCA--AGAACCCAGAGCAGGTGGAGGCCTCAGAGAAG-----CCTGTGGCAGGGCTCTGGGC s mm5.chr11 74272412 452 + 121648857 --TCCTAGTCTTCCACGTGC-CATGGCGTGTCCCCGTGTTCTGAGTCTAATGACAAATACTTACGGCACCTGCTTTGTG---A-CCCTCTCCTTACAGGTCCACGGCCTACCACTTCAACCCCAAGCCTGCCAGCCCCCGCTTCCTCAGCCATTCCCTAGTAGAGCTGCTC----AAC-----CAGATCAGCCCAACCTT---------CAAAAAGAACTTTGCTGTGCTGCAGAAGAAAAGGTAGCGCCTCTGCCAC-CATGCCCTGCCCTGCCTCCAGTCACAGG-------------------CTGGACCCCACAGCAGCACCTCTGCCTGAAGAAATGGTG--------TCCCAGTGCCT--GAGAGTCCCTAGTCCAAGGGGGC----------------AACAGCCTTGGGAGAGGTGCCCATTTGC-TCTATTTGACT-TCTGGTTGGCATCCATGGGTAGGAGATGCCAGAACA-GTGAGGGCCTCAGAGAAGAGACACTCACAACTAGGCTCTAAGC s rn3.chr10 61954933 436 + 110733352 --TGCTCGTCCTCCACGTGC-CCTGGCGTGTCCCCGTGTTCTGAGTCTAATGATAGATACTTAGGGCACCTGCTTAGTG---ACCCCTCTCCTTGCAGGTCCACAGCCTACCACTTCAACCCCAAGCCTGCCAGCCCCCGCTTCCTTAGCCATTCTCTAGTAGAGCT----GCTCAAC-----CAGATCAGCCCAACCTTCAAAAAGAAC---------TTTGCTGTGCTGCAGAAGAAAAGGTAGCACCTTTGCCAC-CGTGCCCTGCCCTGCCTCCAGTCACAGG-------------------CTGGACCCCACACCAGCATCTCTGCCTGAAGAAATGGTG--------TCCCTGTGCCT--GAGAATACCTGGTTCAAGGGGGC----------------AACAGCCCTGGGAGAGATGCCC-------------------TTTGGTTGGCATCTATGGGTAGGAGATGCCAGAACA-GTGAGGGCCTCAGAGAAGAGGAGGTCACACCTGGGCACTAAAC s canFam1.chr9 14290169 447 - 53642819 TGTGTGAGCCCATTTCAGGTCTTTAGGCCG-CTACTTG-------------------------GGTGCCCTGTGCCGTGACCA-CCCTCTCCCCTCAGGTCCACAGCGTATCACTTCAATCCCAAGCCTGCCAGCCCTCGCTTCCTTAGCCATTCCCTGGTGGAGCT---------GCTCAACCAGATCAGCCCAACCTT---------CAAAAAAAACTTTGCTGTGCTACAGAAGAAAAGGTAGAGCCTTTGCAAC-ATCTCCACCCCTTGTCTCACGTCCCACAAGAGGGTGGGTGAACATG-CCAGCCTGAACTTCTTCACGTCTGCCCTAAGAAGCCATGCCTTCAGCCCCCAGCACCCCAGAGCCTCCCT----TTAG---------------------GGCAGTCCTAGAAGACGTGCCCATTTGCTTCTGCTCGCCTCTCCAG--GGTCTCGGTGGG-A--AGACATGAGAGCTGGTTGGTGCTTTAGGGCAGGGG--CCCAGGGCAGGGCTCTGAGC a score=150180.0 s hg17.chr17_random 2233081 206 + 2618010 TTGATGGGCTGAGCATC--TCCCTATCTGCTGTCTGCAATGGGGCCCAGAACCATCCATTCAAGAGGGTCACCACCATATTGCAGGTGTGCAGCTGGACTGTTCCCAAGGCAGAGGCTGCCATGGACTGCAAGCACACAGAGGATGT--ACACCTTGAGCGTGGACTATGAGGAGAACATTTTTGAAGAGGTGCATGCAGC--CTGGCCCTG s panTro1.chrUn_random 177516603 206 - 240967748 TTGGTGGAATAAGCATC--TCCCTCTCTGATGACTGCCATGGGGCCCACAACCAATCATTCAAGAGGGTCACCACCACACTGCAGGTGTGCAGCTGGACGGTTCCCCAGGCAAAGCCTGCCATGGACTGCATGCACACAGAGGATGC--ACACCTTGAAGTTGGACCATGAGGAGAACATTCCTGAAGAGGTGCATGCAGC--CTGGCCCTG s mm5.chr11 74272864 206 + 121648857 TTGGAGGGGTGTTCCACCTTTCCATTCCCCTGCCTGCCACAGGGTCCAGCGCCACCCATTCGAGAGGATCGCCACCCCGTTCCAGGTATACAGCTGGACAGCCCCCCAGGCAGAGCATGCCATGGACTGTGTGCGTGCGGAGGACGCCTACACCTCGAGGCTGGGCTACGAGGAGCACATTCCTGGACAGG----TGCTAC--CCAGACCCG s rn3.chr10 61955369 204 + 110733352 TTGGAGGGGTGTCCCACCTTCCCATTCCCCTGCCTGCCACAGGGTCCAGCGCCACCCGTTCGAGAGGATCGCCACCCCGTTCCAGGTATACAGCTGGACAGCCCCCCAGGCGGAGCATGCCATGGACTGTGTGCGTGCTGAGGACGCCTACACCTCAAGGCTGGGCTACGAGGAGCACATTCCTGGACAGG----TGCTAC--CCAGACC-- s canFam1.chr9 14290616 205 - 53642819 TTGGCAGTTTCTCCATC--TCCCCCTCTC---GCTGCCACAGGGTCCAGCGCCACCCATTCGAGAGGATTGCCACCCCGTTCCAGGTGTACAGCTGGACAGCCCCCCAGGCGGAGCATGCCATGGACTGTGTGCGTGCGGAGGATGCCTACACCTCGAGGCTGGGCTATGAGGAGCACATTCCTGGACAGGTGCCTGCAGC--CTGGCCCTG s fr1.chrUn 264580819 202 - 349519338 TTGATGGTATCAAAAAA--ACTCTAT--------TGTTGCAGAGTTCAGCGACACCCCTTTGAAAGGATAGCAACACCTTTCCAGGTGTACAGTTGGACAGCTCCACAGGTAGACCACGCCATGGACTGTGTTCGGGCCGAAGATGCCTACACCTCCCGTTTAGGCTACGAGGAACACATACCTGGACAGGTACCTGCTGCCGCTGAACCTG a score=117275.0 s hg17.chr17_random 2233287 286 + 2618010 CCTTCACTGGGAA------CCCCCTTCCTT-CTGGGTACTAGACAGAATTCTGTACACTTTCCTGG-AGGCTCCAT------TCTGGTCTGTTCATTT-GGAAGTTT--CAGGCTGTCTGTGAGGAAGTAAAAAAAAGAGATGTCTCAAAGCAGGTTGTGGGG-CACAGGCTGAGCCCTTGTCTCCCTCCCTAGTCCCTCTGCAGACACGGGGCTGGAAGAAGGACCTGTGGATAATAAGGGAACTGCTCTTCGAGAACCGGCCTGAGCAGCTGCTTCAAGAAAGAGCCACATTAAAGGTGCCT s panTro1.chrUn_random 177516809 287 - 240967748 CCCTCACTGGGAA------CCCCCTTCCAT-CTGGGTACTAGACAGAATTCTGTGCACTTTTCTGGGAGGCTCCAT------GCTGGTCTGTTGATTTTGGAAGTTT--GATGCTGTCCGTGAGGAAGTAACAAAA-GAGATATCTCAGAGCAGGTTGTGGGG-CACAGGCTGAGCGATTTTCTCCCTCCCTAGTCCCTCTGCAGACATGGGGCTGGAACAAGGACCTGTGGATAATGAGGGAACTTCTCTTCGAGAACCTGCCTGAGCAGCTGCTTCAAGAAAGAGCCACATTAAAGGTGCCT s mm5.chr11 74273070 247 + 121648857 CCCTTCCT---------------------------------GCCAGGCTCATATGCACCTCCCAGT-AGGCTCCC------------TCTGTTCTCTA-GG---------GGCCTATCCACAGGGAAGTGGAAGAAGGGGATAACCCAGAGCAGGTCAGCAGA-CATAGGCTGAGCCTGCCTCTGCCTCCCTGGTCCCTCCACAGACCCGGGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCCGCAAGAACCTGCCTGAGCGGTTGCTCCGAGAACGAGCCATATTCAAGGTGACT s rn3.chr10 61955573 246 + 110733352 -------------------CGCCCTTCT-------------GCCAGGCT-CTATGCACCTCCCAAT-AGGCTCCC------------TCTGATCTCTA-GG----------GCCTATCCACAGGGAAGTGGAAGAAGGGGATAGCCCAGAGCAGGTCAGGAGA-CACAGGCTGAGCCTGCCTCTGCCTCCCTGGTCCCTCCACAGACCCGGGACTGGAATGAAGAGCTGCAGACAACAAGGGAGCTGCCCCGCAAGAACCTGCCTGAGCGATTGCTTCGAGAAAGAGCCATTTTCAAGGTGACT s canFam1.chr9 14290821 301 - 53642819 CCCTCCCTGGCACCTCTCTCGCCCTCCCTTGCTGGGTGCCGGGCTGGGATCTGTGCGCCTCCCTGG-AAGCTTATCTATTTATCTGTCTTGTTTACTT-GGGAGCTTTGGAGGCTGTCCATAGGGAGGTAGAGGGA-GGGATGGCCCAGAGCAGGTCTTGGGGCCATGGGCCAAGCTGGCATGCCCCTCCCTGGTCCCTTTGCAGACCCGGGACTGGAACGAGGAGCTGCAGACGACGAGGGAACTGCCCCGCAAGAACCTGCCTGAGAGGCTGCTTCGAGAAAGAGCTATATTCAAGGTGCCT a score=2313.0 s hg17.chr17_random 2233573 6 + 2618010 ATAGCC s panTro1.chrUn_random 177517096 6 - 240967748 ATAGCC s mm5.chr11 74273317 6 + 121648857 ACAGCC s canFam1.chr9 14291122 6 - 53642819 ATGGCT a score=563.0 s hg17.chr17_random 2233573 21 + 2618010 ATAGCCCCTGATGAGGGAATG s canFam1.chr9 14291122 21 - 53642819 ATGGCTCTTTATGCCTGACTG a score=1923.0 s hg17.chr17_random 2233579 15 + 2618010 CCTGATGAGGGAATG s panTro1.chrUn_random 177517102 15 - 240967748 CCTGATGAGGGAATG s canFam1.chr9 14291128 15 - 53642819 CTTTATGCCTGACTG a score=8336.0 s hg17.chr17_random 2233594 32 + 2618010 GCAGCCTCAGGCCCGCCTGCCA-----TCTGTGAGCA s panTro1.chrUn_random 177517117 32 - 240967748 GCAGCCTCAGACCCGCCTGCCA-----TCTGTGAGCA s rn3.chr10 61955819 37 + 110733352 GCAGCCTTAAGCCTCCCTGTTACTGGGCTTGTGGGTA s canFam1.chr9 14291143 32 - 53642819 GTAGCCCCAGGCATGCTTGCCT-----CCTGCCAACA a score=9032.0 s hg17.chr17_random 2233626 103 + 2618010 GGTTTTCTTCCTAACAGGATGAAAGCAAAGAAAGCTGGAATGAGCCCAGCCCTCTCAGGCAGCTTGAAGGCTGTTGGGGCTCTTTCCAGGCCTTCTAGCCTTA s panTro1.chrUn_random 177517149 103 - 240967748 GGTTTTCTTGCTAACAGGATGAAAGCAAAGAAAGCTGGAATGAGCCCAGCCCTCTCAGGCACCTTGAAGACTGTTGGGGCTCCTTCCAGGCCTTCTAGCCTTA s rn3.chr10 61955856 79 + 110733352 ---------------AAGAGAAAACCAGAG---GCTGGCACTAGCCTACCTTTGTTGGCAACACTGGAGAT------AGACTTTGCAGGGTATGTCAACCTCC a score=9280.0 s hg17.chr17_random 2233729 47 + 2618010 TGCTTTTTGGCAGGCCACTTAGGCACCTTTTTCCAGCCT--CTGAGACT s panTro1.chrUn_random 177517252 47 - 240967748 TGCTTTTTGGCAGGCCACTCAGGCACCTTTTTCCAGCCT--CTGAGACT s rn3.chr10 61955935 49 + 110733352 TGCCTCTCAGAAAACCACCTCAGGTTTTTGCTATGGCTTCACTGAGATT s canFam1.chr9 14291206 49 - 53642819 CACCTCTGGGCACACTATCTCAGCTCTGTTTTGTGACTCCTCTGAGACT a score=12503.0 s hg17.chr17_random 2233776 103 + 2618010 -----TCCATGTTCTGGAAGGA-----GAGGGTCCCACTTTTCACTAGGCTATGGGGC-AGGCCCATCCAGC-TCCCAGCTGCCACTAACAACCATGGGGCTCTCACCTGGGCAC s panTro1.chrUn_random 177517299 104 - 240967748 -----TCCATGCTCTGGAAGAA-----GAGGGTCCCACTTTTCACTAGGCTATGGGGCCAGGCCCATCCAAC-TCCCCGCTGCCACTAACAACCATGGGGCTCTCACCTGGGCAC s canFam1.chr9 14291255 115 - 53642819 TGGAGTCCTGGGGCTAGGTGGAGGGTGGGGGGACCTCCTCCATTGTGGACTGTGTGACAGGTTTCTTCCGGCTTCCCACCTACCACTGTCTGCCATTGGGACCTTGCCTGGGCAC a score=13459.0 s hg17.chr17_random 2233879 147 + 2618010 CCACTGCCCAAACATGGCCCTTCTAAGGCAGAAGATCATGTGTCTTGCAGTTTCAGCTTGCTAGGGCTTAAAAGTTATCAGTGCTGTTATTAAGATAGGGAAGTGAGAAAGGAAAACTTGCTGTAAAAGTTTCCCATAATCTTACCA s panTro1.chrUn_random 177517403 147 - 240967748 ACACTGCCCAAACATGGCCCTTCTAAGGCAGAAGATCATGTGTCTTACAGTTTCAGCTTGCTAGGGCTTAAAAGTTATCAGTGCTGTTATTAAGATAGGGAAGTGAGAAAGGAAAACTTGCTGTAAAAGTTTCCCGTAATCTTACCA a score=33066.0 s hg17.chr17_random 2234026 191 + 2618010 CGGAGATCATCAGCACAGATGACAGCACAGGTGGGGCTGCTGGGGAG---GCTGAGGGAGAGTGTCC-AGCCTGTTCTGCCAGCTGGTCCTTGCCAGGGGT----------GTCTCGTGACCCAGTCCCTTAGAGAAGCATGCAGATATCTTAGCAAGTATCTGGAAGGTGCAGATCAGGGCAACCCAGCACCACT-----GATGGTGGA s panTro1.chrUn_random 177517550 192 - 240967748 CGGAGATCATCAGCACAGATGACAGCACAGGCAGGGCTGCTGGGGAG--AGCTGAAGGAGAGTGTCC-AGCCTGTTCTGCCAGCTGGTCCTTGCCAGGGGT----------GTCTCATGACCCAGTCCCTTAGAGAAGCATGCAGATACCTCAGCAAGGACCTGGAAGGTGCAGATCAGGGCAACCCAGCACCACT-----GACGGTGGA s mm5.chr11 74276131 174 + 121648857 CAGAGACCATCGCCTCAGATGATGGCACAGGTGGGGTTCCTT--------GCTTGTTTGGAGAGCCCAAGCTGGTCCTGGCAGCTTAGCCATG--GGGGGTGGGGGTGGTGGTGTCATGA-----TCTCTGAGAGAGGCAGGCAGATATCCCTAGAGTGGGTTGGGTGA-GAGGCTCACGGT------GCACAGCT-------------- s rn3.chr10 61959235 137 + 110733352 CAGAGACCATCGCCTCAGACGATGGCACAGGTGGGGCTGCTG--------------------TGCTT-GTTTGGTTGTGGCAGTTTAGCTC----ACAGAT---------------------------CTCTGAGGGGCAGGCAGACATCCCTAGAGCGGGTGGGCAA--GAGGCTCATAGC-----AGCACAACT-------------- s canFam1.chr9 14293846 178 - 53642819 CAGAGACCATCGCCTCTGACGACGGGACAGGTGGGGCTGCTGTGGATGTGGGGAGGGCGGAGCTCCA-GTGCTGTCCCTGTAGCTG---------ATGGCT----------------TGACCTAGC--CTGAGGGAGGCCGGCAGGTGTCCCCAAATGGAGCTGGG----GAGGCTCAGGGTAGCGCAGCCCCACCCCCCTGATGGGGGA a score=438.0 s hg17.chr17_random 2234217 25 + 2618010 GTGGGCCTACCTCCCATCAAGCTG------T s panTro1.chrUn_random 177517742 25 - 240967748 GTGGGCCTACCTCCCATCAAGCTG------T s mm5.chr11 74276305 23 + 121648857 ------CTACCTACCATCC--TTGCCCGCCT s rn3.chr10 61959372 17 + 110733352 ------CTACCTCCTATCC--TCA------C s canFam1.chr9 14294024 25 - 53642819 GGGGAGCTGCGTCCCAGCCGACCT------T s danRer1.chr15 18351121 25 + 23217395 GTGAACGTAAATTCAATTTGACTC------A a score=4441.0 s hg17.chr17_random 2234242 5 + 2618010 GTCTC s panTro1.chrUn_random 177517767 5 - 240967748 GTCTC s mm5.chr11 74276328 5 + 121648857 GTCTC s rn3.chr10 61959389 5 + 110733352 ATCCC s canFam1.chr9 14294049 5 - 53642819 GTCTC s danRer1.chrNA 65294018 5 + 390413307 GCCGC a score=89863.0 s hg17.chr17_random 2234247 105 + 2618010 CAC-AGCTGACCCTTGAAGCCAGGAGGTGATTTACAACATGTGCAAGGCAGTGAGCTCCATCAGCTGTGTGGCCTTCAACATTCACTTCAACTCGGACA---TCTCACC s panTro1.chrUn_random 177517772 105 - 240967748 CAC-AGCTGACCCTTGGAGCCAGGAGGTGTTTTACGACATGTGCAAGGCAGTGAGCCCCATCAGCTGTGTGGCATTCAACATTCACTTCAACTCGGACA---TCTCACC s mm5.chr11 74276333 108 + 121648857 CAC-AGTAGACCCTCGAAGCCGAGAGGTGATCCGAAATGCCTGCAAGGCTGTTGGCTCCATCAGCAGCACGGCCTTTGATATTCGCTTCAATCCTGACATCTTCTCCCC s rn3.chr10 61959394 108 + 110733352 CAC-AGTAGACCCTCGAAGCCGAGAGGTGATCCAAAACGCCTGCAAGGCTGTTGGCTCTGTCAGCAGCACAGCCTTTGATATTCGCTTCAATCCTGACATCTTCTCTCC s canFam1.chr9 14294054 108 - 53642819 CAC-AGCAGACCCTCGGAGCAGGGAGGTGATACGCAACGCATGCAAGGCAGTTGGCTCCATCAGCAGCACAGCCTTTGACGTTCGCTTCAACCCTGACATCTTCTCACC s fr1.chrUn 264583302 108 - 349519338 CAC-AACAGACGCCAAAAGTCAAGAGGTGGTCCTGAATGCATGCAAGGCAGTGGGTTCCATCAGCAACACATGTTTCGACATCCGCTTCAACCCAGACATATTCTCTCC s danRer1.chrNA 65294023 93 + 390413307 CACAAGCCAGCCTTC--ACCGAGGAGGACATCCTGAACATTTTCCCTGTTGTGAAGCACGTCAACCCCAAAGCCTCAGATGC---CTTCCA-----------TTTCTTC a score=0.0 s hg17.chr17_random 2234352 6 + 2618010 AGAAAG a score=2865.0 s hg17.chr17_random 2234352 2 + 2618010 AG s panTro1.chrUn_random 177517877 2 - 240967748 AG s mm5.chr11 74276441 2 + 121648857 AG s rn3.chr10 61959502 2 + 110733352 AG s canFam1.chr9 14294162 2 - 53642819 AG s fr1.chrUn 264583410 2 - 349519338 AG a score=745.0 s hg17.chr17_random 2234354 4 + 2618010 A-AAG s panTro1.chrUn_random 177517879 4 - 240967748 A-AAG s mm5.chr11 74276443 5 + 121648857 GCAAG s rn3.chr10 61959504 5 + 110733352 GCAAG s canFam1.chr9 14294164 5 - 53642819 GCAAG a score=-4179.0 s hg17.chr17_random 2234358 29 + 2618010 CAGTGG---GGACTGG----CCAATGCA-GAAGCCTG s panTro1.chrUn_random 177517883 29 - 240967748 CAGTGG---GGACTGA----CCAATGCA-GAAGCCTG s mm5.chr11 74276448 30 + 121648857 TAAGAA---TGGATAA----TCAGTGAGTGAACCCTG s rn3.chr10 61959509 33 + 110733352 TAAGAA---TGGATGGATACTCAGTGAG-TGAACCCG s canFam1.chr9 14294169 27 - 53642819 TTTTGGGTTGGGGTGG----ACA------GAAGACTG s danRer1.chrNA 65294116 24 + 390413307 CAGAGC---GGACAGG----CCAAGGTT-CAG----- a score=7252.0 s hg17.chr17_random 2234387 25 + 2618010 CAAAGT----GGAACAGA--GCGTCATGGGG s panTro1.chrUn_random 177517912 25 - 240967748 CAAAGT----AGATCAGA--GCTTCATGGGG s mm5.chr11 74276478 25 + 121648857 CAACTG----AGGGCAAA--GCATCATGGGA s rn3.chr10 61959542 25 + 110733352 CAACTG----TGGGCGGA--GCATCATGGGA s canFam1.chr9 14296572 27 - 53642819 CAAAGT----ACAGCAGGGTGCGTGACCAGG s danRer1.chrNA 65294140 29 + 390413307 CAAGGTAACAAAAACAAA--TGATCATCGGT a score=0.0 s hg17.chr17_random 2234412 5 + 2618010 TGGGG a score=2790.0 s hg17.chr17_random 2234412 5 + 2618010 TGGGG s panTro1.chrUn_random 177517937 5 - 240967748 TGGGG s mm5.chr11 74276503 4 + 121648857 TGGG- s rn3.chr10 61961636 5 + 110733352 TGGGG s canFam1.chr9 14296605 5 - 53642819 TGGGG a score=-8514.0 s hg17.chr17_random 2234417 48 + 2618010 GATGTGGGG--CCTGC-------CTGCTCATCTGAGCACTGCTCCCTG-AGGGTGTGA s panTro1.chrUn_random 177517942 48 - 240967748 GATGTGGGG--CCTGC-------CTGCTCATCTGAGCACTGCTCCCTG-AGGGTGTGA s mm5.chr11 74276507 41 + 121648857 ---CTTGGG--CTCTT-------CAG--CAGCAGAAAGCTTCTCCCC---TGATGTCA s rn3.chr10 61961641 50 + 110733352 GAAATGGGAGTGTCTC-------TTGCCCAGCCCTGACCTTGCCACCC-TGGCTGCCT s canFam1.chr9 14296610 49 - 53642819 GGAGGGGTG--TCCCC-------TGGCCCAGCCCTGACCTTGCCACCCTTGGGGGTGC s danRer1.chrNA 65294169 48 + 390413307 GCTTTGACA--CCTTCAACGTTTTTGCAGAGCTGATTGATGCGTCCT--TGG------ a score=-798.0 s hg17.chr17_random 2234465 5 + 2618010 TCTGC-- s panTro1.chrUn_random 177517990 5 - 240967748 TCTGC-- s mm5.chr11 74276548 5 + 121648857 TCTGC-- s rn3.chr10 61961691 3 + 110733352 CTT---- s canFam1.chr9 14296659 5 - 53642819 CCTGC-- s fr1.chrUn 264585234 5 - 349519338 TTTTC-- s danRer1.chrNA 65294217 5 + 390413307 --TGCGC a score=172925.0 s hg17.chr17_random 2234470 140 + 2618010 AGGCTTCCTGAAGGAGGGCTGTGAGCTCATCTGCGAGGCCCTGAG-CCTGTGGAAC-ATGGCT--GAGGCCAAGCCCATGGGG-ATTTGTGTCTACTTGCACCTCCTTGCTCATCT-CAGTACACTACAGGTGA-CTGTGCCGAGGT s panTro1.chrUn_random 177517995 143 - 240967748 AGGATTCCTGAAGGAGGGCTGTGAGCTCATCAGCGAGGCCCTGAGTCCTGTGGAAC-ATGCCT--GAGGCCAAGCCCATGGGGGATTTGTGTCTACTTGCACCTCCTTGCTCATCT-CAGTACACTACAGGTGAACTGTGTCAAGGT s mm5.chr11 74278707 144 + 121648857 AGGCTTCCTGAAAGAGGGCTGTGAGCTCATCAACGAGGCTCTGAA-CCTGTTCAACAATGTCTACGGAGCCATGCACGTGGAG-ATCTGTGCCTGTCTGCGTCTTCTGGCCCGCCTCCACTACATCATGGGTGA-TTATGCTGAGGT s rn3.chr10 61961694 144 + 110733352 AGGCTTCCTGAAGGAAGGCTGTGAGCTCATCAACGAGGCTCTGAA-CCTGTTCAACAATGTCTATGGAGCCATGCATGTGGAG-ATCTGTGCCTGTTTGCGGCTTCTGGCCCGCCTCCACTACATCATGGGGGA-TTATGCTGAGGT s canFam1.chr9 14296664 144 - 53642819 AGGCTTCCTGAAGGAGGGCTGTGAGCTCATCAATGAGGCCCTGAA-CCTGTTTAACAACGTGTACGGAGCCATGCACGTGGAG-ATCTGCGCCTGCTTGCGCCTCCTTGCTCGTCTCCACTACATTATGGGTGA-CTATGCCGAGGT s fr1.chrUn 264585239 144 - 349519338 AGGTTTTCTGAAGGAGGGTTGTGAGCTGATAAATGAGGCTCTAAA-TCTCTTCAACAATGTGTATGGTGCAATGCACGTAGAG-ATTTGTGCCTGTCTGCGCCTCCTGGCACGTCTTAATTACATCATGGGAGA-CCACCCTGAGGT s danRer1.chrNA 65294222 144 + 390413307 AGGCTTTCTAAAAGAGGGTTGTGAGCTCATCAACGAGGCCTTGAA-CCTCTTCAACAATGTGTATGGAGCCATGCATGTGGAG-ATCTGTGCCTGCCTGCGTCTTCTGGCTCGACTCAACTACATCATGGGCGA-TCACCCAGAGGT a score=20630.0 s hg17.chr17_random 2234610 837 + 2618010 GGGCCTTGAGCATCCCCTGGGCTGTGTTAGCAAGGGGCTCTGGGCCTGGCCTGGCATTGA--GGGATGGC---AAATAAGGGGCCTGGGGTTGCATTGTCACCCCCTATGGTAGCATAAAATGAGAGAGTCC-GACCTGCAGGACTGGAACCCTA-----TCAAGGGGG-TTAGGAGGCTGCTCACTTTCCCTCAG-GAACCCATGTGGAGGAGCTGAGGGAGGTTAAGGAGACCCTAGGGACTCACTTGTTCTGTCTGGGCT---TCCCTCTGCTCCATCGTTTGATGACCATT---------TTCTGGGAAGAGCTCAGGAACCTCCTGTGCTCT-------AGTGAGATGGG---GCCTCCCCT------CACAGGGTAT-TCTGAGACTGTGAGTGAGAAGCT--AACACAGT-----GCCTTGCAATACTCACGGGAGCTGT---CATCCTCTGTGACCATCACGTGGCCTTGTAGTGTTCAGAC--------TGCCTGGCCTGCCTGGGGTTTGGTGA------GGCTGTTTT-CTGGTCAGC------------TGCTTTAGAATCTCACTTTCTCTGC-AATCAAACAGTGACTGTCTTTGTGTCTGTTTATGGGTTTAAAAAA-TCCTAATATTTCATTT----ATAGTAGTTTCAGCT--------TGCATGTGTTTATTTGTATAAATTTTATTAGAATAAAGAAAGCTTAAGACAACAGCATTTTAA-GGTCTT--AATGAGGCATAGACTTTCAT-ATCACAACA---GCTATTGTTGACCTC-TGTTTGCTACCTTTATGTAATGTATACACATAAAGTACAGCCAGAGGTGACTAGAGCTGAGCTTCTTGGGCTTGCTTGCTGGCCTGCAGTCAGGTGGACTCTGGCTGTGAGGCGGTGCCCACCCTGGATCTACATCCCCCA s panTro1.chrUn_random 177518138 843 - 240967748 GGGCCTTGAGCATCCCCTGGGCAGTGTTAGCAAAGGGCTCTGGGTCTGGCCTGGCATTGA--GGGATGGC---AAAAAAGGAGCCTGGGGTTGCATTGTCACCCCCTATGGTAGCATAAAATGAGAGAGTCCAGACCTGCAGGACGGGAACCCTAAC--ATCAAGGGG--TTAGGAGGCTGCTCACTTTCCCTCAGAGGACCCATGTGGAGGAGCTGAGGGAGGTTAAGGAGACCCTAGGGACTCACTTGTTCTGTCTGGGCT---TCCCCCTGCTCCATCGTTTGATGACCATT---------TTTTGGGAAGAGCTCCGGAACCTCCTGTGCTCT-------AGTGAGGCGGG---GCCTCCCCT------CACAGGGTAT-TCTGAGACTGTGAGTGAGAAGCT--AAAACAGT-----GCCTTGGAATACTCATGGGAGCTGT---CATCCTCTGTGACCATCATGTGGCCTTGTAGTGTTCAGAC--------TGCCTGGCCTGCCTGGGGTTTGGTGA------GGCTGTTTT-GTGATCAGC------------TGCTTTAGAAGCTCACTTTCTCTGCGAATCAAACAGTGACTGTTTTCATGTCTGTTTATGGATTTAAAAAAATCCTAATATTTCCTTT---TATAGTAGTT-CAGCT--------TGTATGTGTTTATTTGTATAAATTTTATTAGAATAAAGAGAGCTTAAGACAATAGCATTTTAA-GGTCTT--AATGGGGCATAGACTTTCAT-GCCACAACA---GCTAATGTTGACCTC-CTTTTGCTGCCTTTGTGTAAAGTACACATAAAAAGTGCAGCCAGAGGTGACTACAGCTGAGCTGCTTGGGCTTGCTTGCTGGCCTGCAGTCAGGTAGACTCTGGCTGTGAGGCGGTGCCCACCCTGGATCTACATCCCCCA s mm5.chr11 74278851 631 + 121648857 GTG--------------TAGGCTGTGGCA-------CTTCTGGCT---GTCACGTATTAGTTGGGACTGCATGAAAGAAAGGTCTGGGGACCCCACCATCACCCCCTGT-------TAAAAC-AGGGAG---------------------------------AATGGG--TT----------------------------TCCATGTAG-------------------GGAGGTCCAAAG----TTCTTGTTCCG--TGAGCT--------------CATCAGCTCTTGTTGCTG---------TCCTTGGGAGAACTCAGTAGCTGCCTGTGCTCT--------GCAAGGTGAACATGACACCGCTCAGGGACACAGGCAAG---AGAGCCAGTGAGTAAG-AGCTGCGACACAATACCTGGCCTTTGAGTGACCATGGGAA-----------------GACCAGCCGATGGTCT------------------------CTTGTTTTCTTTGGTGTTCTGTGGCATTCCAGCTATTTTGCTGGTCTTCAGGCTCTCGGTATGCTTTGGG---CCCCCTGCTCTCT----CAACCAGAGGCTGTCCTAGGA-------AAGCTTTTTAAAAA---------------TT----AATGCATTTTCAG-------------ATGTTGGTTTTTGCATAGGCTTTGTTAGG--GAAGAAGATGTAGAATGATAAGTTTCGGATGGTCTC----TGTGGCGAAGACCTCCTCAGTCAAAGCA---GCCATTAT----------CCTTCTGCCTGTGTGCAAAGG----ATAGAAACTGCAG-----GCTAGCCCGTGCTGGG-----TGGGGCTGCT-------------------------CAGTTGGGGAGCAGTGCTCACCTGAGATGGA-------TA s rn3.chr10 61961838 635 + 110733352 GCG--------------TTGGCTGTGGCG-------CTTCTGGCG---CTCATGTATTAGTTGGAGCTGC----ATGAAAGGTCTGGGGGCCCCACCAT---------------------------------------------------CACTGCCTTGTTAAA-----ACAGGAGAATGCTC----TCCCTTGG-GTTTCCACGTAG---------TGGCATCCCAAGAGCTCCAAAG----TTCTTGTTC------------------------CATGAGCTCTCAACCATTCACTTGCTGTCCTTGGAAGAGCTCAGTAGCTACCTGTGCTCT--------GTAAGGTGAG---------CAT------GACATGACAGCTCAGAGATGGTGGC-----------AATAGAGT------------------TGTAAGAGCTGT-GGCACAATATCTGGCCTTTGAGTGACCGTGGGAAGACCAGCCAAAGGTCTCTTTTGTTTTCCTCAGTGTTGTGTGA------TTTTATTCC-------AGC------------TATTTCGAT---GGCCCTGGGCTCT----CAATCAGAGGCTGTC--AGGG-------AGGTGTTTTAGAAG---------------TG----AATGCATTTTCAGTTAAGTTTCAGATCTGTTTGTTTTTGCATAGACGACTTTAGG-----GAAGATGTAGAACAGTAAGTTTCAGGTGGTCTC--AGTGTGGCCAAGACCTCCAGAGTCACAGCCCCTGCTATTAT----------CTTGCTGCCTGTGTGCAAAGG----ATAGAAGTTGCAG-----GCTAGCC------------------CATGCTGGTGGGGCTGCT-------------CAGTTGGGAAGCAGTGCTCACCTGAGATGGA-------TA s canFam1.chr9 14296808 722 - 53642819 GGGCCTTGAGCACCCTCCGGGCTGTGTCAGCAGAGGCCTTGGCGCCTGGCCTGGCACTGG--GGGATGGC---AAGTGAGGGAGCTGGGGCTGTGTTCTCACCCCATGC-----CGCAGGAAGCGGGAGTCCAGGCCTGGGGAGCTGAACCCC------ATCTGTGGGGCCGAGGGTGCTGCTC-----TCCTTGG-GGCCCCCTG-GGAGGTACAGCCAGAGACCAGGGAGACCCTGGGGAGCTGCTCATTCTGCCTGGCTTTTCTTCCCCTGCTCTGCAACTCTGTAGTTATA---------TTCTTGGGAGAGCT----GCCCTGCTGTGGACACAGTCGGAGTGATGGCAG---GGCCTCCCT------CGCAGGCACA--------TTGGGAAGGATAGATT--CTCAGAGT----------CGGAGCTGCATGA-AGCTGTTGGCAGCATCTCTAAGTGCTCCTTGGCCTTCTGGTGTTCACC---------TGCCTCCCTGGCCTGGGCCTTTGCCC------G------------------------------TGCTTCACG-----------------GGGCAAGTGCAGCCTGTCT------------CTGCTCCTCAA----CCCTAGACTCTTATTTGCGTGTGCCCTTTTTAGAT---------CTGTATATATCTTTGCACAGATTTTGTTAGG-GGTAAAAGGCTCAAGACAAGCTATTTAAAAAGGCCTCGGAGTGGGGCATGGCCTTCCGTGCTCACCGTAA--GTGAGTTTTGAACACTCCTTTGCTG------------------ATG--------AG-----GCTGA--------------------GTTGCTCGGGGGCC-------AGGCGGAC--TCGATGTGGGGAGGCACCCACCCGGGATGACGCTTCCCCA a score=1861.0 s hg17.chr17_random 2235447 7 + 2618010 CCCTCTC s panTro1.chrUn_random 177518981 7 - 240967748 CCCCCTC s mm5.chr11 74279482 7 + 121648857 CCATCTC s rn3.chr10 61962473 7 + 110733352 CTATCCC s canFam1.chr9 14297530 3 - 53642819 CC----T s danRer1.chrNA 65297596 7 + 390413307 CCTTCTC a score=118832.0 s hg17.chr17_random 2235454 95 + 2618010 -TCCTTAGTCCCTGAGTAACCAAC--AAGGCCGTGCTAATGAGCGGGCAAGTGATGGGCATCGGGTACCCCAATACTATCTGGGAAGATTTGAAT------GCC s panTro1.chrUn_random 177518988 95 - 240967748 -TCCTTAGTCCCTGAGTAACCAAC--AAGGCCGTGCTAATGGGAGGGCGAGTGATGGGCATCGAGTACCCCAGTACTATCTGGGAAGATTTGAAT------GCC s mm5.chr11 74279489 98 + 121648857 -TTTCCAGGCCCTCAGCAATCAACAGAAGGCCGTGCTGATGAGTGAGCGGGTGATGGGCATTGAGCACCCCAACACCATTCAGGAATATGTGAGT-----AGCC s rn3.chr10 61962480 98 + 110733352 -TTTCCAGGCCCTCAGTAATCAGCAGAAGGCTGTGCTGATGAGTGAGCGGGTGGTGGGCATTGAGCACCCCAACACCATCCAGGAATATGTGAGT-----AGCC s canFam1.chr9 14297533 98 - 53642819 -CTCCCAGGCCCTGAGTAACCAACAGAAAGCAGTGCTGATGAGTGAGCGAGTGATGGGCATCGAGCACCCCAACACCATCCAGGAATATGTAAGT-----AGCC s fr1.chrUn 264585455 103 - 349519338 -TCCACAGGCTCTTAGCAATCAACAGAAGGCTGTTCTGATGAGTGAGCGGGTCCTTGGCATTGAGCACCCCAACACGATTCAAGAATATGTAAGTCATCGCACC s danRer1.chrNA 65297603 98 + 390413307 TTTTTAAGGCTCTGAGCAACCAGCAGAAGGCTGTGCTGATGAGTGAGAGAGTGCTGGGTATTGAACATCCCAATACTATTCAAGAATATGTAAGT------GTC a score=131996.0 s hg17.chr17_random 2235549 198 + 2618010 A-TCTGGGCTGGAGCT-----------GTTGGGATTAGGGTCTGTGGCTGCCTTGGCTTGTCATGGTGCCACCCACAGATGTGCCT-GCCCTGTGCTGCTTCTCCAGCAACCGGCTGCCCATGGCCCTGAGCCTGTCACACCATTCTTGCTACCTCATACTGCTTGTGTTT-GAAAAACCCATCCAGAGATGGCATTGCTGGATGTGAGTGC s panTro1.chrUn_random 177519083 198 - 240967748 A-TCTGGGCTGGAGCT-----------GTTGGGATTAGGGGCTGTGGCTGTCTTGGCTTGTCATGGTGCCACCCACAGATGTGCCT-GCCCTGTGCTGCTTCTCCAGCAGCCGGCTGCCCATGGCCCTGAGCCTGTCACACCATGCTTGCTACCTCATGCTGCTTGTGTTT-GAAAAACCCATCCCGAGATGACGCTGCTGGATGTAAGTCC s mm5.chr11 74279587 201 + 121648857 AGGCTGGGGTTGGCTT-----------GTAGGTGTAGGTGCCTGAGGCTACCCTGACCCACCGTGACCCCACCCACAGATGCACCTGGCCCTGTACTGCTTCGCCAGCAGCCAGCTGTCCACAGCCCTGAGCCTCCTGTACCGTGCCCGCTACCTCATGCTGCTTGTGTTTGGGGAGGATCACCCTGAGATGGCATTGTTGGATGTGAGTGT s rn3.chr10 61962578 201 + 110733352 ATGCTGGGGTTGGCGT-----------GTAGGTGTGGGTGCCCGAGGCTACCCTGACCCACCATGACCCCACCCACAGATGCACCTGGCCCTCTACTGCTTTGCCAGCAGCCAGCTGTCCACAGCCCTGAGCCTCCTGTACCGTGCCCGCTACCTCATGCTGCTTGTGTTTGGGGAGGACCATCCTGAGATGGCATTGTTGGATGTGAGTAT s canFam1.chr9 14297631 209 - 53642819 GTGGGGGGACTGGGCCTTggggcccgggccggggccggggccTGGGCCTGAAGTGGCTCCCCCCG---CCCCCCGCAGATGCACCTGGCCCTGTACTGCTTCGCCAGCAGCCAGCTGTCCACCGCACTGAGCCTGCTGTACCGCGCCCGCTACCTCACCCTCCTCGTGTTTGGGGAAGACCACCCCGAGATGGCCCTGCTGGACGTGAGTGC s fr1.chrUn 264585558 198 - 349519338 A-GATAACATGAACATTTA--------GCTTACGTGTTGGCCCCAGACTCATCTG-CTTATCTT----TTCTTTGCAGATGCACTTGGCTCTATACTGCTTTGCCAATGGCCAGCTATCAACTGCCCTAAAACTCTTGTATCGAGCCCGTTACCTCTTGCTGCTGGTTAGTGGGGAGGACCACCCAGAGATGGCGCTGTTAGATGTGAGTGC a score=26714.0 s hg17.chr17_random 2235747 91 + 2618010 TGAAAAGGGG-----------------------------GCAGCACCTTTGTCCTGGGGGATTAGGAGCTGACCAGATTCCTCCTGACTCC-CTCCCAGAACAA-GTGGGTCAGGTGCTGCA s panTro1.chrUn_random 177519281 91 - 240967748 TGAAAAGAGG-----------------------------GCATCACCTTTGTCCTGGGGGATTAGGAGCTGACCAGATTCCTCTTGACTCC-CTCCCAGAACAA-GTGGGGCAGGTGCTGCA s mm5.chr11 74279788 106 + 121648857 TGGCGAGGAGAATGTGGGTGACCAGA--------CCGT-GGATGGACTTTGTACAGGGG----AGGAACTGACTTGGTTTCTTCC--TTCT-CCCCCAGAACAACATCGGGCTGGTGCTGCA s rn3.chr10 61962779 106 + 110733352 TGGAGAGGAG----------TCTAGGTGAACAGGCCGTGGGATGGACTTTGTGTAGGGGG---AGGAACTGACGTAGTTTCTTCC--TTAT-CCCCCAGAACAACATCGGGCTGGTGCTGCA s canFam1.chr9 14297840 94 - 53642819 TGGGCAGGGG------------------------TGGC-GGGGCAGCCTCATCCCGGGGAAG-CGGAACTGACCCGGGGCCCTCC--CGCTGCCCCCAGAACAACATTGGGCTGGTGCTGCA a score=2218.0 s hg17.chr17_random 2235838 10 + 2618010 ATTAATGATG s panTro1.chrUn_random 177519372 10 - 240967748 ATTAATGATG s mm5.chr11 74279894 10 + 121648857 TGGAGTAATG s canFam1.chr9 14297934 10 - 53642819 TGGAGTGATG a score=100.0 s hg17.chr17_random 2235848 1 + 2618010 C s panTro1.chrUn_random 177519382 1 - 240967748 C a score=76738.0 s hg17.chr17_random 2235849 234 + 2618010 CCCCCAGAAGATGTGTT-TACACTGGCTGAGCAAATACACTATGCAGAATCCTAAATGAAGACACG-TGAATGGGGTGTAT-GGACATCAGTTAGCAACTG-GGAAACAGGTGCCTCTCAGGTCTC-----------------------------TCGTGCTCCAGCAAGTGTG---GAATATG-------------CCTGTGCCCATGA-------------------------------------------------GTGTAGACATC--------------------------------------------------------TGGAGTG-----------------------TATACATT--------TGGCTGCTGCTTTTGCTGCCACTATCCCCAGGTCCAACCTGGCTTAA s panTro1.chrUn_random 177519383 234 - 240967748 CCCCCAGAAGATATGTTCTGCACTGGCTGAGCAAATATACTATGCAGAGACCTAAATGAAGACACG-TGAATGGGGTGTGC-GGACATCAGTTAGCAACTG-GGAAACAGGTGCCTCTCAGGCCTC-----------------------------TCATGCTCCAGCAAGTGTG---GAATATG-------------CCTGTGCCCATGA-------------------------------------------------GTGTAGACATC--------------------------------------------------------TGGCGTG-----------------------TATACATT--------TGGCTGCGGCTTTTGCTGCCACTATTCCT-GGCCCAACCTGGCTTAA s mm5.chr11 74282334 299 + 121648857 CCCCTAAAAGATGGTTT-TGCACTGGTTCAATGAATATTCAATGCAGAGGCCTAATTGAAGACACG-AAAGTAAAGTGTGT-AGGCATCAGCTC-CAGCTGAGGGGGCAAGTGCCTCCCCAGC-------------------------------------ATCAAGCAGATGTG--------TG-------------TGTGTGTCCATGC-------------------------------------------------CTGTGGATGTC--TTGCTCCGTCCTTCCTGATGTACATAGCCCAGTCAGTTCTGAGTGG-------ATGACGTGCAGATGCAATTTCTCAGGTCATTTATATGTTTGACATTATGGCTGCTGCTTTTGTTGCCACTACCCCTGGGTCCAGCCTGGCTTAA s rn3.chr10 61965159 294 + 110733352 CCCCTAAAAGATGGTTT-TGCACTGGTTCAATGAATATTCAATGCAGAGGCCTAATTGAAGACAAGAAAAATGAAGTGTGTAAGGCATCAGCTC-CAGCT--GGGGGCAAGTGCCTCCCCAGCCTCAAGCCGATGTATGTCCATGCCTGTGGATGTCTTGCTCCGTCCTTCCTG---ATGTATATAGCCCAGTCAGTTCTGAGTGGATGA------------------------------------------------CGTGCAGATAACAATTTCTCA-----------------------------------------------GGTCATT-----------------------TCTATGTTTGACATTATGGCTGCTGCTTTTGTTGCTACTACCCTTGGGTCCAGCCTGGTTTAA s canFam1.chr9 14300099 311 - 53642819 CCCCCCAAAGATGTTTT-TGCACTGGTTCAATGAATATACGATGCAGAGGCCTAATTGAAGATACA-TGAATGGAGTGCGT-GGGCGTGAGTCCCCAGCTG-GGGGGCAGGTGTCCCCCTGGCCTCC----------------------------CCATCTTCAAGCAGGTGTGTGCGAGTGTG-------------TCCATGCCTGTGAGCGTCTCGATCCGTCCTTCCTGACTTGTACATAGCCCCACCTTGGTTCTGAGTGGATGAC----------------------------------------ATGAAGAGATTTCTCAGGTCATT-----------------------TGTATGTTTGACGTTATGGCTGCTGCTTTTGCTGCCACTGCCCCAGGGCCTGACTTGGCTTAA a score=10954.0 s hg17.chr17_random 2236083 34 + 2618010 AGTCCAGGTTTTAAGTAAAAAAATGGGAG-GCTTT s panTro1.chrUn_random 177519617 33 - 240967748 AGTCCAGGTTTTAAGT-AAAAAGTAGGAG-GCTTT s mm5.chr11 74282633 34 + 121648857 AGTCCAGGTTTCAGCCAAAAAAGATGGGG-GCTTT s canFam1.chr9 14300410 35 - 53642819 AGTCCAGGTTTGAAGCCAAAAAGAAGGGGAGCTTT a score=11399.0 s hg17.chr17_random 2236117 129 + 2618010 TTGCCATAcagctacttgagaggctgaggtgaaagcatcactggagcctaagagtttgaggctgcagtgacccatgattcagccactgcactgacacagtgagaccTGCGTGTGCCTTTCTACAGAGAA s panTro1.chrUn_random 177519650 129 - 240967748 TTGCCATAcagctacaaaagaggctgaggtgaaagcatcactggagcctaagagtttgaggctgcagtgacccatgattcagccactgcactgacacagtgagaccTGCGTGCACCCTTCTACAGAGAA a score=1621.0 s hg17.chr17_random 2236246 24 + 2618010 TACCTCTGGG--GCAT----TTGGGGATCC s panTro1.chrUn_random 177519779 24 - 240967748 TAGCTCTGGT--GCAT----TTGGGGATCC s rn3.chr10 61965676 28 + 110733352 TACCCCGGGTGAGCATAACCTTGGGGGC-- a score=129.0 s hg17.chr17_random 2236270 16 + 2618010 CTACAGTCCGGGAC--AT s panTro1.chrUn_random 177519803 15 - 240967748 CTACAGTCCCGGGC---C s mm5.chr11 74282847 18 + 121648857 CTACAGGCTTTGACTTGC s rn3.chr10 61965704 17 + 110733352 CAACAGTCT-GAATGTAT a score=-32356.0 s hg17.chr17_random 2236286 113 + 2618010 CTCCCTGTCCCCTGTGGCC-------------------------------------TGTGCTTCTT---------------------------------------------CCC-------------TTGCCT-------GCTG------------------------TCA--------GAGCCTAA-----------------------------------CATGGAGG-----------AGGAG---GTTGCTGCCCTGTGAGC-----------------------------------------CTG--------------------------------------------------AGGGAGCTGTGTCT-GACTGGGGCTTCT s panTro1.chrUn_random 177519818 110 - 240967748 CTCCTTGTCCCCTGCTGCC-------------------------------------TGTGCTCCTT---------------------------------------------TCC-------------TTGCCT-------GCTG------------------------TCA--------GAGCCTAA-----------------------------------CATGGAGG----------CA-------GTTGCCACCCTGTGAGC-----------------------------------------CTG--------------------------------------------------ATGGAGCTGTGTCT-GACTGGAACTTCT s mm5.chr11 74282865 248 + 121648857 CTCCCTGCTCCCTGTACCCCAGGTGAGCATAACCTTGGGGGCCAACAGTCTGAATGTATCTTTCTC---------------------------------------------CCCATTTAAACCTGAGCTGCCT-------AATGCACAGTTGGGTAAGGGGTGGGGACCCA--------GGGCTGAA------TTGTGGAT-------------------CCCAGGGAAAGTGCTATGCACAGGAGTGATTTGTCACCTCTGGAGC-----------------------------------------CTGGCTCCTCCTTGGTCTTTGCCATATAAGCACTTATAC-------------AAAGAAGCTCTGGGG-TGTTGGGGCTCCT s rn3.chr10 61965721 308 + 110733352 CTTTCTCCCCATTTTAACC-------------------------------------TGAGCTGCCTAATGCATAGTTGGGTAAGGGGTGGGACCCAGGGCTGAATTGTGGATCCCAGGGAAAGTGCCATGCCTAGGAGTGATTG------------------------TCACCTCGGTGGAGCCTGACT-CCTTCTTGGTTTTTGCCATATAAGCACTTACACAAAGAAGCTCTTGGGTGTTGGGGCT-CCTACTGCCTTGGCTGCCCTCTCTCTCTCCCCTCCCTGCCTGTGTCGTTTTTCTTTGTCTG---------------CTGTCCCTGAAGGAGATGGCCACCCTTTGAGCCTAAGAGAGCTGTTTTA-GGCAGATCCTCT- s canFam1.chr9 14300869 119 - 53642819 CTCCCTCCCGCCCG---CC-------------------------------------CGCGCTGCTT---------------------------------------------CTC------------TGTGCCT-------GCTG------------------------TTG--------GAGCCCCGATGGGTCGGTGGGT---------------------CAGGGAG--------------------CTCGCCACCCCAGTGAG-----------------------------------------CTG---------------------------------------------------GGGAGCTGTCCCTGGGCCGGGGCCTCT a score=129960.0 s hg17.chr17_random 2236399 297 + 2618010 GTCTGGGGTTTTGCGAAGAGCTACTTATGAATATGGTCTGTCCAGATACCTTGTTTCAAAGGAAGTGAGCATGAGCTAGCAAGTGTAGCCACCCCACAGCTGATAAACAACTTTGTCTTGTTTTTAAATCATCA-GTCTTCATTTCACATTGGAATAAAGTAAT----TGAAACATGCTACCCCAGCCTCGCCCGTGTGTTCTGTAAGCCAGACTCATT---TCGTTGTGTGGGCT--GTTGTCAG-AAA---TGTTATAAAAAAAT---------------TATGCATAAATAAGATCAAATGTAAAAGTATGCTTATAATGTCA s panTro1.chrUn_random 177519928 299 - 240967748 GTCTGGGGTTTTGCGAAGACCTACTTATGAATATGGTCTGTCCAGATACCTTGTTTCAAAGGAAGTGAGCAAGAGCTAGCAAATGTAGCCACCACACAGCTGATAAACAACTTTGTCTTGTTTTTAAATCATCA-ATCTTCATTTCACATTGGAATAAAGTAAG----TGAAACCTGCTACCCGAGCCTCGGCCATGTGTTCTGTAACCCAGACTCATTG--TGGTTGTGGGGGCT--GTTGTCAGAAAA---TGTTATAAAAAATT---------------TATGCATAAATTAGATCAAATATAAAATTATGCTTATAATGTCA s mm5.chr11 74283230 293 + 121648857 GCTTGGGGCTTTTCT-GGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGTTTCAAAGGGAATGGGCATGGGCCAGCAAG----GCACCCCCACAGCT-ATCAAGAACGTTTTCTTGTTTTTAAACCATCACGTCTTCATTTCACATTGGAATAAAGTGAGTTTTTGAAACCTGCTGCCCCAGCCTTTCCTGTGTGCTCTGTG----GAACTTGTTC--CTATTGCTTGAGTG--AGGCTCAG-AAGTACTGCTGGGAGGTAAT---------------TGTGTATATATTATGTCAAACTCAACGTTATGTTC---AAGTCA s rn3.chr10 61966029 289 + 110733352 ACTTGGGGCTTTTCT-GGAGCTGCTGATGGATAGTATCTGTCCAGGGACCTTGTTTCAAAGGGAATGGGC---GGCCAGCAAG----GCATCCCCACAGCT-ACTAAGAACGTTTTCTTGTTTTTAAACCATCACATCTTCATTTCACATTGGAATAAAGTGAGTTTTTGAAACCTGCTGCCCCAGCTTCCCCTGTGTGCTCTGTG----AAACGTGTTC--CTATTGCTTGAGTGAAGCTGTAAG-AAGTACTACTGGGAGGTAAT---------------TACACATACATTGGGTCAAACTCAA---CATGTTC---AAGCCA s canFam1.chr9 14300988 319 - 53642819 GCCTGGGACTTTGCGGGGAGCTGCTGATGGGTATAGTCTGTCCAGATACCTTGTTTCAAAGGCAGTGGGTGTGAGCTAGCAAGCGGAGCCTCCCCACCGCTGATCAAGAACTTTTTCTTGTTTTTAAACCATCACGTCTTCATTTCACATTGGAATAAAGTGAGTTTTTGAAACCTGCTGCCCCAGCCTCTCC--TGTGCTCTGTA--CCAGTCTCCTCCATCTGGGGGGAGGGCT--GTTGCCAC-ACCTGGTACTAGTAGAAGAGTTTAAAACACACGAATGTGTACAAATTAGGTCAGATGGAAGACTCTCCTTAAAATATTG a score=-329.0 s hg17.chr17_random 2236696 15 + 2618010 CTTGAGTGGGTGGTA s canFam1.chr9 14301307 1 - 53642819 --------------A a score=3840.0 s hg17.chr17_random 2236696 9 + 2618010 CTTGAGTGG s panTro1.chrUn_random 177520227 9 - 240967748 CTTGAGTGG s mm5.chr11 74283523 9 + 121648857 CTGAAGTGG s rn3.chr10 61966318 9 + 110733352 CTGAAGTGG a score=483.0 s hg17.chr17_random 2236705 4 + 2618010 GTGG s panTro1.chrUn_random 177520236 4 - 240967748 GAGG s mm5.chr11 74283532 4 + 121648857 AAGG a score=0.0 s hg17.chr17_random 2236705 6 + 2618010 GTGGTA a score=182.0 s hg17.chr17_random 2236709 2 + 2618010 TA s panTro1.chrUn_random 177520240 2 - 240967748 TA a score=9943.0 s hg17.chr17_random 2236711 37 + 2618010 AGAGGGTAGAGTCACAGGAAATCTGTTGGGGTTTACA s panTro1.chrUn_random 177520242 37 - 240967748 AGAGGGTACAGTCACAGGAAATCTGTTGGGGTTTACA s rn3.chr10 61966327 37 + 110733352 AAGGGGTATGGCCCCAGCTATCCAGCTGGGCCCTACA s canFam1.chr9 14301308 37 - 53642819 AGGGGGTGGAGTCACAGGCGCCCAGCTAGAGTTTACC a score=55818.0 s hg17.chr17_random 2236748 581 + 2618010 CCCCTGCTACTTACCAAGCTCATGAGAGTG------TGGCAGAGGTGATCATCACCTGATATTTGTGGCAGAAGAGAAAAGTCCAGCGTGAAGGC---CAGGTAGGGGAGACGTGCCAGGCTGTGGGGCCAGGCCCTGCACATGCTGGGCCTGTT--ATGTCA-CTGAACATCTAACTGCCCAGGAAACGGCTCTTTTCACATCATCTGAGGTAAGAGGATGGAGAAGCACTCTCCAGAAGTCACACTGCGCTGGGAGAATGGAGGAGAGCCTACAACTCACCATCCTAAGGTAGGTTTTAGATTGA-GCTGAACTGTCT--TCGAGAGCTAATGAGATGGGAGGAAGACAGTCCCCCAGG-TGCACCTGACAGCCAGAGCCTATGAAGTTAGGGGGGTTGTGT-GGGGGTGGCCTGTCCCTATGAGAAGAGGAGCTTAAAGCTACTAAAGCTGGTGGCCGCTGCTCTGCCATCCCTCTACAGAGCAGGCAGGTCCTCAGCTGCATGTATAGCTGAATCTCTTTTGGAGTGTTAGAGA-------CTCCTCTATGTCTT--AGAAATTTTG-AAAAGAAAAACAAATCTCAATTTTAATGTTGATTGG s panTro1.chrUn_random 177520279 587 - 240967748 CCCCTGCTACTTACCAAGCTCATGAGAGTG------TGGCACTGGTGACCATCACCTGACATTGGTGACAGAAGAGAAAAGGCCGATGTGAAGGC---CAGGTAGGGGAGAGGTGCCACGCTGTGGCACCAGGCCCTGCGCATGCTGGGCCTGTTAGAT-TCACCTGAACATCTAACTACCTGGGAACCAGCTCTTTTCATATCATTTGAGGTAAGACGATGGGGGAGCACTCTCCAGAAGTCACACTGAGCTGGGAGAATGGAGGAGAGTCTACATCCCACCAGCTTACGGTAGGTTTTAGATTGAGGCTGGACTGTCTTGTGGAGAGCTAATGAGATGGGAGGAAGACAGTCCCCCAGGATGCACCTGACAGCCAGAGCCTATGAAGTTAAGGGGGTTGTGTGGGGGGTGGCCTGTCCCTATAAGAGGAGGAGCTTAAAGTTCTTAAAGCTGGTGGCTGCTGCTCTGCCATCCCTCTACAGAGCAGGCAGGTCCTCAGCTGCACAAATATCTGAATGTCTTTTGGAGTGTTAGAG---------TCCTCTATGTCTT--AGAAATTTTGAAAAAGAAAAACAAATCTCAATTTTAATGTTGATTAG s canFam1.chr9 14301345 530 - 53642819 TGACTTCCAGTCACTAGACCTATGAGAATGGCTCCTTCGTAGAGCTG--------------TGTGTGGT--------ACAGGTTAGAGTGAAGGCGGATGGGAATGAGGGGTGGGGTAGGGTAGGGGCCCAGGGCCTGGACCTGCTGGCCCTGATAGGT---GCCTGAACACCTGATT--TTGAGCATCTGTGCTTGTC----CCTTTGAGTC---AGAACTGGGCAGCAACCCCTGGAAGACTAGGAGTGCTG---AAATGGAGGGGTGTC--AAGTTTGCTGTCCTAGGGTAAATTTTGGGTGGA--CTAGGCTCTC---TGGAGACTCAGTGAGATGGAGGAAAGGGTAACCCCAGAG-GGGGCTTGAGGGGCAGGGCCTGTGAGGTGGGAAAGGTTCTGAGGGGAGCTGTCTG--------AGAAGGGAAG--------TCCCATAACTGGCAGCTGCTACTTGGCCATCCTT-----GAGCAGGTAAGGCCTCAGCAAC----ATACTTGAATACCTTTCTGGGTACTTGGGGAGAGTTTTTTTTTTTTGTCTTTAACAAATTCTCTGGAGAGAAAAAATATTCCAACT----TGTTAC---- a score=9471.0 s hg17.chr17_random 2237329 48 + 2618010 TTTCTCTGAGCCAGTT-GGGAAAAAAGATGTCCTTCACCTCAAAGGTTT s panTro1.chrUn_random 177520866 49 - 240967748 TTTCTCTGAGCCAATTGGGGAAAAAAAACGTCCTTCACCTCAAAGGTTT s mm5.chr11 74283949 44 + 121648857 TTTTCCTAAGCCAGT---GGGAGAAAGATGTTTCTGATCTTGATA--CT s canFam1.chr9 14301875 44 - 53642819 TTTTCCTGAGCCAACT-----GGAAAGACATCCTTGACCTTGAAGTTGT a score=42684.0 s hg17.chr17_random 2237377 293 + 2618010 AAGT-------GACA-CCGAAGGGTAGCCACCAGTG-TCTCGGCCACTGAAGCCT--CATGCAT-------GCTCCCACTACCAGTT--TGATTTGCAGC-------CCCATAGTTGTG-TTGTACTAAATATTCTTTCC--------TCTGG-CCTTG-----------TCCAGTGAACACGGTTCACATGGCTAA-----------------------------------CACCACTTCTTGAGATGCGAGCACCAT---GCAAAGCTGAGA---------ACGGATTGGGTTTTGTGACCATTGTGCCTCCTCCTCACCTGAGAGGCCCATTTTTCCTGGTTGATT-CATTAAGTGTATTAGTGCTGTCAGTCGCCTCT-GGACAAT s panTro1.chrUn_random 177520915 294 - 240967748 AAGT-------GACA-CCGAAGGGTAACCACCAGTG-TCTCGGCCACTGAAGCCT--CATGCAT-------GCTCCCACTACCAGTT--TGATTTGCAGC-------CTCATAGTTGTG-TTGTACTAAATATTCTTTCC--------TCTGG-CCTTG-----------TCCAGCGAACACGGTTCACATGGCTAA-----------------------------------CACCACTTCTTGAGATGCGAGCACCAT---GCAAAGCTGAGA---------AGGGATTGGGTTTTGTGACCATTGTGCCTCCTCCTCACCTGAGAGGCCCATTTTTCCTGGTTGATT-CATTAAGTGTATTAGTGCTGTCAGTCGCCTCTGGGACAAT s mm5.chr11 74283993 368 + 121648857 AAGT-------AACATCCGTTAAGTACTTACCAATGATTTTGACCATTTAAGCCTACTGTGTAT-------GTTCCCTTTATAATTTGGTGATTTGAAGCAAGGTCTCTTAGAGCCAAGACTGGCCTCAAAATCCCTTTTAAGCTGAGTGTGA-CTTTGAGTTCCTGGTTACCGGTGTGCACATGACACCTGGTTCATTTTGTCGTAAATGTGTTTGTTGACTTGTTGGACTCCCCACTTCTGGAAAG--GGACATCAC---ACAAAGTTGAGGCTGCTCTGCATGAGCTTAATAGTTTAATCA-GATGCTTACAAGTCACCCTAGAAGCCCATTTTTCTTGGTTGGTTCCCTTAAGCATATTAGTGTTATTAAATTCCTTT-GTAAAAT s canFam1.chr9 14302071 294 - 53642819 AAGTTTTCTAAGCCA-------------TGCCGGTA-GAATCCCCGTTGCTGCCT--GATGCATGCACCCCGCCCCCACCACCACTT--TCCTTGGCAGT-------TTCAAGGTTGTG-TT---CTGAACGTGCCTTCC--------TATGGTCTTTG-----------TCCTCTGAACACCAGCAATGTGCTTCA-----------------------------------CAGCACTTGCAGAAGGG-GGGCATTATCTGGTAAGGCTGAGA---------AATGCTCAGGTTTAATTACCATTGTATCCACCAGTCACCTAGAAGGCCCG-TTTTCATGGTTGATC-CGTTAAGGATATTGGTGCTGTCAGATACCTTC-CAACAAG a score=38597.0 s hg17.chr17_random 2237670 320 + 2618010 TGAAATGACAAGTGGCTGTTGATTCATAAAGAAAATGAAGGCTTTAGATGCGAAACCCTCATTTTCTCTTGTCCTTCTCTTAGGTGA-AAGATTTTATTTTTTTCAAAAGGCTACATACTGGTATCCCAGCAGGTGTAGTGTGAGAACTGGCATATGTTAGGCTATGGTGTCAGTGTGGATGGGCAATTCTTCAAGATGGAAAACCAAGTCTCACTGAGTTGCTGGAGCCACAGTGACCTTTCTCCACATCCCCCACCGTGGGCTTTC----ACTTTTCTCCTGTGCTTGAATTTTTTTCACATACAAATTCTTTATacacacac s panTro1.chrUn_random 177521209 316 - 240967748 TCAAATGACAAGTGGCTGTTGATTCATAAAGAAAATGAAGCCTTTAGATGTGAAACCCTCGTTTTCTCTTGTCCTTCTCTTAGGTGA-AAGATTTTATTTTTTTCAAAAGGCTACATACTGGTATCCCAGCAGGTGGAATGTGAGAACGGGCATTTGTTAGGCTATGGTTTCAATGTGGATGGGCAATTCTTCAAGATGGAAAACCAAGTCTCACTGAGTTGCTGCAGCCAAAGTCACCTTTCTCCACATCCCCCACCATGGGCTTTC----ACTTTTCTCCTGTGCTTGAATTTTTTTCACATACAAATTGTTTATACAC---- s canFam1.chr9 14302365 294 - 53642819 CCAAATGATAAGGGACTGTTGTTTA--AAGGGAACAAAAGGTTCTAAGTGTGAAATCCACTCTTT---------TCCTCTTAGTTGACAAAATGCCATTTTTAAAATAAGGTGAC-TAGTGGTATCCAGGAAGGGTTGGTGTGGGAGCCAGCA--TGTTAGGTTATGGTCT--GTGTTGATGGGCACCTGTTGAAGAC-TAACATTAAGT----CTAAATTGTGTGAGCCACACCCACCCGT-TTCATGTACCCCATGCTAGTCTTTCCAAAACTCTTC-----TGTTTGGATTTAACATGCATGTTACTTTTATAAATAC---- a score=32131.0 s hg17.chr17_random 2237990 407 + 2618010 acagacacacacacacaTAtctcactctgtcaatgcagtggctgaatcatgggtcactgcatcttcaaattcttaggctccagtgatgctttcaaatcag-cctctcaagtagctgggactacaggcatgcaaagctacacccagacaatttttaaatatttttctagagactgagcctacttatgttgctcagactcgtcttgaactcctgggatcaagcgatcatcccaccttggccaccc-aaagtg-tttagattacaggtatgagctagcactctcagcAAAAATATATTTTAAAGAACCATTACAACCAAATTAtgagttatcattatgccactgccctccagcctgggcaccagagcaagaccttgtatccaaaaactaagcaaaactaagcaagaacaaaaa s panTro1.chrUn_random 177521525 405 - 240967748 ----ACACACACACACACGTCACACTCTGTCagtgcaggggctgaatcttggttcactgcagcctcaaactcttaggctccagtgatgctttcacctcagccctgtcaagtagctgggactacaggcatgcaaagctacgcccagacaatttttaaatatttttctagagactgagcctacttatgttgcccagacacgtcttgaattcctgggatcaagcgatcatcccaccttggccacccaaaagtgttttagattacaggtgtgagctaccactctcagcAAAAATATATTTTAAAGAACCGTTACAACCAAATTAtgagttatgattatgccactgccctccagcctgggcagcagagcaagaccttgtatccaaaaactacgcaaaactaaacaagaac-aaaa a score=89080.0 s hg17.chr17_random 2238397 731 + 2618010 aaaaaCCT--TATAACTAAATTAAACTTTGAAGATTGTGTCATC------------------TGTGTCCTTCCCTGCCCTCCAAGCTATCAATGTTAAATATAATGGTTATTGAGAAAA---TGGTTAGATATTATTAAGAAATTTCTATATATCCTCCAGCTGAGAATAGGTATTCTGATGTGGCCCAAATATTTTCTCACCGCTACCTTCAGGGTCTAAACTAGCA-------------------AGTCAGGACACCTGCAGAGGACAGTTGACCATTTTCAAATAGAAA--GAGAAATA-CCCCGTTCATGAGAGTAATCCAGTGATTTTCAAAAAGACAAGACACACTGACATCCAGCGCAGTCAGGGCACAATTA-CCTTGGAAAAATCACCTCACACAGAATGGTTGAGGAGACTTTCTAAGGTGAGCAAATTTGGGAAACATAATCCTTTCTTATTTATTTCCAGCCCCCGCTGCCCCCCTGATTCCTAATGGTCACACAACAGTGTGGTCAGCAGTGGGGTGCAGTGTTGTGAGAGAGGGGCTCAGGGATGGGATGAAGGTCTTTACCGC-GTTACAAAAATGCAGGTTAAAAAGTTGCTAAAAAGATGTCT-AAATATTCTAATTCCTACTGTTACATAGCTGCTAAGATGCA-TTATACAACAGA-CCCAGGTAAGGGAAAGAGCATGTGCAT-----TTCAAGTCTCAGCT-CACGTCTGAATTAGCTGTGATACTCTGGGCACGTGACCCCAAAT-ATAGGAGCCTGTTTGCCTGT s panTro1.chrUn_random 177521930 736 - 240967748 aaaaaCCT--CATAAACAAATTAAATTTT-AAGATTATGTCATC------------------TGTGTCCTTCCCTGCCCTCCAAGCTATCACTGTTAAATATAATGGTTATTGAGAAAA---TGGTTAGATATTATTAAGAAATTTCTATATATCCTCCAGCTGAGAATAGGTATTCTGATGTGGCCCAAATATATTCTCACCGCTACCTTCACGGTATCAACTAGCA-------------------AATCAGGACACCTGCAGAGGACAGTTGGCCGTTTTTAAATAGAAA--GAGAAATACCCCCGTTCATGACAGTAATCCAGTGATTTTCAAAAAGACAAGTCAGACTGACATGCAGTGCAGTCAGGCCACAATTACCCTCGGAATAATCACTTCACACAGAATGATTGAGGAGACTTTCTAAGATGAGCAAATTTTGGCAGCGTAATCCTTGCTTATTTATTCCCGGCCCCCGCTGCCTGCCTGATTCCTAATGGCCACCCTACAATGTGGTCAGCAGTGGGATGTAGCATGGTGAGAGAGGGGCTCAGGGATGGGATGAAGGTCTTTCCTGCTATTATCAAAATGCAGGTTAAAAAGTTGTTAAAAAGATGTCCAAAATGTTCTAATTCCTACTCTTAAATAGCTGCTAAGATGCATTTATACAACAGACCCCAGGTAAGGGAAGGAGCATGTGCAT-----ttcaagtctcagct-cacgtcttaattagctgtgatactctgggcatgtgaccccaact-atatgagcctgtttGCCTGT s canFam1.chr9 14302665 711 - 53642819 AAAAAGCTAGCATAGCCAAATTAGCTCTG-AAGATTGTATCATCAAGGAAAAAAAGATTTTATGTCTCCACTCATGCCCTGCAAACTGCCTTTGTGA-----AATGGGTATTGAGAGCGCTCTAGTTAGACTGCACCCAGGAA--CCTGTATACCCTGAGGCAGAGAACAAG--------------------GTTATCACATTCCTCCTGCCAGGGTCTAAACTATCAAATCAAGCAAGGCATGTGTAATCAGGACGCCTACAGAGGACAGGTGGCC---CTCAAATGTAAACTGAGAAAAA-CCCCATT----AGGCAAATCCATTGATTAAAAAAAAAAAAAGAGAGA--GAGATGCAGACTAGGCAGGACCGAATTATCCTGAGAACAGTCATTTCACAAAGAATGATTTAGGAGCTTTCCAAAAGT--TCAAGTGTAGGCAGCATAATCCTTGCTGACCCATTCCCAGGCTCCG-------CCCCATTCCTAATGGCCTTCTCACAG---AGTTCCCAGTGTGGTGCAAT---GTGATAGAGGGCCTCCGGGATGGGACGAGGGTCATTCCTGC-ATGGCTAA-----AGGTTAAACTG-------AAAGAGGTCA-GAAGG-------TCCTCCTTACACTTAGCTAACAAGATGCC-TAACA-GGCAGA-ACCAGGTAAGGGAAAGAGCCTGCGCATTTGGGTTGGAGTCCCAGCTCCCCTTCTAGATTAGTATTAATACCCTTGGCCTAAGACCTTGCCTCAAGTGCACCTGTTTTCTTGT a score=240759.0 s hg17.chr17_random 2239128 2966 + 2618010 CAACccaaaacaatcctaagcaaaaacaacaaagcttgaggcatcctgctacccgacttcaaactatactacaaggctacagtaaccaaaacagcacagtactgataccaaaacagatatatagacaaatggaacagaacagaggcctcagaaataacatcacacatctacaaccatctgatctctgacaaacctgacaaaaacaagcaatggggaaagatttcctacttaccaaatggtgctgaaagaactggctagccacattcagaaaacag-aaattgtaccccttccttacaccttatgcaaagattatcttaagatggattaaagtcttaaatgtaaaacaccaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgagcaaagacttcatgaataaaataccaaaagcaatcacaacaaaagctaaaattgacaaattagatctaactaaactaacgagcttctgcacagcaaaagaagctatcaccagagtgaccaggcaacctacagagtgaaagaaaatttttgcactctatccatgtgtcagaggtctaatatccagaatctacaaagaacttaaacaaattcacacacacacaca--aaaaaaccatcaaaaagtgggcacagaatataaacagactcttttcaaaagaagatatttggctgggcgcggttgatcaagtctgtaatcccagcactttcagccgtggaggcaggtggatcatgaggtcaggtgttcaagacca-gcctgggccgcatggcgacaccacatttctactaaaaacacaaaaaattagtaggatgtgttggcgggtgacctgtaatcccagtttctggggaggctaaggcaggagaatcacttgaacctgggtggcagatgttgcagtgagccgagatacttccactgcactccagcctgggtgacagagcaagactccatcttaaaaataataataataagtaaaataaat----agaaaaagaagaaggagaaggagaaggagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaggggacctttatgtggtcaacaaacaca------aaaaagagaaaagctcatcatcactggagactagagaaatgcaaatcaaaaccacaatgggataccttctcacaccatgttgaatggcagttattaaaaagttaggaaacaacagatgctggtgaggctgtggaggaatagaaacacttttacactgctggagggagtgtaaattagttcaaccattatggaagacagtgtggtgattcctcaaggatctagaaccagaaataccatttgatccagcaatctcattactgggtatatacccaaaggaatataaatcattctagcataaagacacatgcactcatatgtctattgcaccactgtttgcaatagcaaagacttggaaccaaccttaatgcccatcattgatagattggaaaaagaaaatgtggcacatatacaccatgaaataatatgcagccataaaaagaatgagttcatgtcctttgcagggacgtggatgaagctgggaaccattaacctcagcaaactaacacgggaacaggaaagcaaacaccatatgttctcactcatatgtgggagttgaaaaatgagaacacatggacacctggagccaaagatcacacactaaggcctgttaaggggttgaggtcaa-ggggagggagaaaattaggacaaatacctaatgcatatggggcttaaaacctagatggcaggttgataggtgcagcaaaccaccatggcacatgtaaaactatgtaacaaacctgcacgttctgcacatgtattccagaactta----aaaacaaactaacaaaaGTGCACTAAGTCTGAGGGGGAGTGGGGGTAAGGGCAGGAGtcaggctcgggtgggtgcgtcctggagtttta-tccaatcattgacactgatgtgggaaccgcccaatcaggcgcgcagttggagaggacaggagaggagggcgtggcttcctgcatttggcggggtctttgtctctcgctggcgctggcacaggaacttgggatccgtctcctctttcgcctcctgcaccttgggagccccgggctactctcccacag-cccctgttgccctgtgatctgtaggtccttggggacgcatagtcaaggtgccaggacatcctggaagctgggaaatggtgagtatacggggtt-cgccatcccgagaggggagaacagactgtgaaaccggcaggaccgtcctccccacggttagctccgagtctcccgcagcttggccctcagtcccctgtggctgcaagatggccgctgggccagcagcgagggccccacgtcccgtccggcccatccggtcctgtccctgggcagcgccctgctctgcgcccacagccatgagtatttcccagattgttcagggaggcctggtgggtcatcagggaaaaaccgcgactgggtgtttgcgtgggaggagctgcggcccgtggggtccccagtctctcttGTTAAAAATTAACGGGAGTCTATGTT-aaacgttaaccagtttatctgaacaaagagtgattggtgaaatggaaagcacccagccatgatttctggtccaccagaggggcataaaggaaaggctttcataagatgcatgagaaagcagcccaaattcaagaattggttccagttatatggtagccttatttgaactatccagatggaaatgtcctggttacatattcagaggttaattgcatgtttgtcatgggttaaacctgcattttgcttcaggctaagatagtgttttataggaaatatatttgagttaggttttagatttttttttgtttgttt-tttgtttttt--acctatgaacacagggcactagagccactttagactaattttctgatctttaattattttaac s panTro1.chrUn_random 177522666 2970 - 240967748 CAACccaaaacaatcctaagcaaaaacaacaaagcttgaggcatcctgctaaccgacttcaaactatactacaaggatgcagtaaccaaaacagcacagtactgataccaaaacagatatatagaccaatggaacagaacagaggcctcagtaataacatcacacatctacaaccatctgatctccgacaaacctgacaaaaacaagcaatggagaaagatttcctacttaacaaatggtgctgaaagaactggctagccacattcagaaaacagaaaactggaccccttccttacactttatacaaacattttctcaagatggattgaagtcttaaatataaaacgccaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgagcaaagacttcagaaataaaataccaaaagcaatcacaacaaaagctaaaattgacaaatgagatctaattaaactaacaagcttctgcacagcaaaagaatctatcatcagagtgaccaggcaaagtacagaatgacagaaaatttttgcaatctatccatgtgtcagaagtctaatatccagaatctacaaggaactt----aaattcacacacacacacaagaaaaaaacatcaaaacgtgagtaaagaatatgaacagactattctcaaaagaagacatttggctgagcgtggttgatcaagcctgtaatcccagcactttcagccgtggaggcaggtggatcatgaggtcaggtgttcaagactaggcctgggcaacatggtgaaaccatgtctctactaaaaacacaaaaaattagcatggtgttttggcgggtgg-ctgcgattccagcttcttggggggataaggcaggagaatcactttaacctgggtgggagatgttgcagtgagctgaggtcctgccactgcactccagcctgggtgacagagcaagactccgtcttaaa---aataataataaataaaataaaTGagaagaaaaggaagaaggaga---------agaagaagaagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagacatttatgtggtcaacaaacacacaaaaggaaaagaaaaaagctcatcatcacttatgattagagaaatgcaaatcaaaaccacaatgggataccatctcacaccatttggaatggcagttattaaaatgtcagg-aacaacagatgctggtgaggctgtggagaaatagaaacgcttttacactgctggagggggtgtaaataagttcaaccattatggaagacagtgtggtgattccccaagtatctagaaccagaaataccatttgacccagcaatctcattactgggtatatacccaaaggaatataaatcattctagcataaagacacatgcactcatatatctattgcagcactgtttacaaaaacaaagacttggaaccaacc-taatgcccatcattgatagactggaaaaagaaaatgtggcacatatacaccatgaaataatattcagccataaaaagaatgagttcatgtcctttgcagggacgtgaatgatgctggaaaccattctcctcagcaaactaaaacgggaacaggaaacaaaacaccatatgttctcactcatatgtgggagttgaacaatgagaacacatggacaccgggaacaaaacatcacacactggggcctgttagggtgttgagatcaagggggagggagaaaattaggacaaatacctaatgcatatggggcttaaatcctagacgtcaggttgatagaagcagcaaaccaccatggcacatgtaaaactatgtaacaaacctgcacgttctgcacatgtattccagaacttaaagtaaaacaaactaacaaaaaTGCACTAAGGCTGAAGGGGAGTGGGGGTAGGGGCAGGAGTCAGGCGGGGATgggtgagtcctggagttttagtccagtcattgacactgatgtgggaaccgcccaatcaggcgctcagttggagaggacaggagaggagggcgtggcttccggcgtttggcgggatctttgtctcttcctggcgttggcacaggaacttgggatccgtctcctctttcgcctcctccactttgggagccccgggctactctttcacagccccctgttgccctgtgatctgtacgtccttggggacgcacagttaagatgccaggacatcctggaagctgggaaatggtgagtatacggggttacgccatcccgagaggggagagcaggctgtgaaaccggcaggaccggcctccccacggttagctccgagtctcccgcagcttggccctcagtcccctgtggctgcaagatggccgctgggccagccccgaggcacccacgtcccgcccggcccatccggtcctgtccctgggcagcgccctgctctgcgcccacagccatgggtatttcccagattgttcagggaggcctggtgggtcatcagggaaaaactgccactgggtgtttgcgtgggaggagctgcggcccgtggggtccccagtctctcttgttaaaaattaaggggagtctatgttaaaacgttaaccagtttatctgaacaaacagtgattggtgaaatggaaagcacccagccatgatttctggtccaccagaggggcataaaggaaaggctttcataagatgcatgagaaagcaaccaaaattcaataattggttccagttatgtagtcaccttatttgaactatccagatggaaatgtcctggttacatattcagaggttaattgcatgtttgccattggttaaacgtgcattttgtttcaggctaagataatggtttataggaaatgtatttgagttaggttttag---tttgtttgtttgtttgtttgtttttttaacctatgaacacagggcactagagccactttagactaattttctgctctttaattattttaac a score=28579.0 s hg17.chr17_random 2242094 214 + 2618010 aCTCCAGAGGAGGACTGGTTTTCTCCTGTGTTTTTTTAATGTATGGCAAGTGGAACCTCTAATCGACCACCCTGTTTTTCATCCTA------ACTCAGGCTTGCAGTAAA-----ATTATCAGTTCCCACTTTCTTTGCTGCATTCTCAAATGCAACACATGAGACCAGCTTTCCCTTGCCAATTTACAATGCTG---TTAACTATATGTCCTTTATTATACATTTCa s panTro1.chrUn_random 177525636 215 - 240967748 aCTCCAGAGGAGGACTGGTTTTCTCCTGTGTTTTTTTAATATATGGCAAGTGGAACCTCTAATCGACCACCCTGTTTTTCAGCCTA------ACTCAGACTTGCGGTAAA-----ATTATCAGTTCCCACTTTCTTTGCTGCATTCTCAAATGCAACACAGGAGAACAGCTTTCCCTTGCAAATTTACAATGTTG--ATTAACTATTTGTCCTTTATTATACATTTCa s canFam1.chr20 52428267 210 + 61172541 ACTCCCAAGGGGCACCTGTTTTCTCCTGAGTGTTCCAGATGTTTGGAAAACTGAGCCTCAAATCCACGACCCTGTCCCCAAGCCTATCCTTTCCTGGGACTGGCAATAAATGCTTGTTTCCAGATCCCGCCC------CCGCGTCCCCAGACGC------------CAGCTTCCCCTGTCCAGTTCAGAGCATCAGTATCAGCTGTTTGTCCTCCGTGGTGCATTTCA a score=142677.0 s hg17.chr17_random 2242308 1730 + 2618010 ttaaagttttctattatttggtttctttctacttctccctacagttctggcaatatttgctttttatatttagaagcctcccttttgggtgcataaatatataaagctatattctcttgagaaattaacctctattattattctatggtaaactcatttcatgcttgtgagagacattgctagaaagtctattttgtctaatttaagcat---taccgttgcactcctttggttattgtttgcatggaatatcattttctatcctttcacttttagcctatgctc-ttaattcataattgagtctcttgtaagcagcatattacgaggtttaaacgattaatttatccactcTGTCtgctttagtctcttttggctgctataactgaatatcacacactggtaattaataaagaatagaattttatttgacttatgattctggaggctgggaagccaaaacaacatgatactggtatatgttgaaggtctagttgctggataataacatagacaaagatgtgagggagagagagc---ttttttttttaatatataacagatccattcttgttataattagcccattcccataataagaacattaatccattcatgagggcagagttcttagagcttaattaatttttaaaggttccacctcttaattctaacatgttggctattaaattttatcctaaattttggagatgacattcaGTGTACAGCAGtatctgtttagtagatactttaatctttttatttgtaaggtagtgataggtaaggagttactattgtaaatttgtagttttctgtccattttaagtttgcttcttttttttctggttctgtctttcctgtggtattgttcatttttgttgagacaaagttatgctttcttgctcagactgaagtgcagtggcatatcacagctcactgtagcttcaacctcctgggctcaaataatcctcccaccttagccacccaagtagcttggactac--agacacgtaccacaacacccaaggagatt-tcatccttccaccttggcctcccaaagtgttggaattataagcaggagacaccatatccaatgtgtaatttttgttgtttgtgtatgctttaattactttctctttttctttactgcagtttttttttcctagtggttatcatgagacttaggtaaaacatcttgtattttaatagtctagtttaagatgataacaatttaTAGTATTCTGAAATTCAGTATGTATTTACCA-TTTTAGTGACATTTATACTTTAGTATTTTTCATATTGTTAGTTAGCATTTCATCATATCAATGTGAAGATTTCTtccagaccatggctggagaaggaaagaaggtgtgttttgcctgactcagtgactatagagagaaccaagttctgcaggcctgtcacctaagtctcaggtgagtatgaattctcttgtgtttttcacagattgttgcagtggcaggaccaaggtcaaatgagttatagccaagtctacagtaaga-tgtggcagtattctgttttgaagccgggaccatgattggcaagcttgccacttggtcaagtgctcaccctctgaaaatgtcttccttggtctttgcctccagctgggtgccacaaactctgaactggattccaaggctttcatgaatgcacttatgtttgctgtggcagctgcattatgtcgtgggggatgtggatgcagaacctcacattctgtcgt s panTro1.chrUn_random 177525851 1734 - 240967748 ttaaagttttctattattggatttatttctacttctccctacagttctgcccatatttactttttatatttagaagcctcccttttgggtgcataaatatatatagctgtatttgcttgacaaattaacctctattattattgtatggtaaactcatttcatgcttgtgagagacattgctagaaagtctattttgtctaatttaagcataactaccattgaactcctatggctattatttgcatggaatatcattttctatcctttcacttttagcctatgctcttttattcataattgagtctcctgtaagcagcatattacgaggtttaaaagtttcatttatccactctgtCtgctttagtctcttttggctgttataacagaatatcacagactggtaattaataaagaacagaattttatttgactcatgattctggaggctgggaaggtaaaacaccatgttactggtatctgttgaaggtctagttgctggataataacatggccaaagatgtgagggagagagagctttttttttttttaatatataacagatccattcttgttaaaattagcccattcccataataagaacattaatccattcatgagggcagagtgcttatagcttaattaatttttaaaggttctgcctcttaattctatcacattggct-----attttatcctaaattttggagatgacattcagtctacagAAGTATCTGTTTAGTAGATAATTTAATCTTCTTATTTGTAAGGTAGTGATAGGTAAGCAGTTACTATTGTACATTTGTAGTTTTCTGTCCATTTTAAGTTTGCTTCTTTTTTTTCTGGTTCTGTCTTTCCTGTGGTATTGTTCAtttttgttgagacaaagttatgctttcttgctcagactgaagttcagtggcatatcacagctcactgtagcctcaatctcctgggctcaagcaatcctcccaccttagccacccaagtagcttggactacttggacatgtaccacaacacccAAGGAGCTTATGATTCTTCCACCTTGGCCTCCAAAAGTGTTGGAATTATAAGCAGGAGCCACCATATCCAATGTGTAATTTTTGTTGTTTGTGTATGCTTTAATTACTTTCTCTTTTTCTTTACTAT-GTTTTTTTTCCCCAGTGGTTATCATGAGACTTATGTAAAACATCTTGTATTTTAATAGTCTAGTTTAAGATGATAACAATTTAGAGTATTCTGAATTTCAGTATGTATTTACCATTTTTAGTGGCATTTATACTTTAGTATTTTTCATATTTTTAGTTAGCATTTCATCATATCAATGTGAAGATTTCTtccagaccatggctggagaaggaaagaaggtgtgttttgcctgattcagcgactatagagagaaccaagttctgcaggcctgtcacctaagtctcaggtgagtatgaattctcttgtgtttttcacagatttttgcagtggcaggaccaaggtcaaatgatttgtagccaagtctacagtaagagtgtggtagtattctgttttgaagcgaggaccatgattggcaagcttgccatttggtcaagtgcttaccctctgaagatgtcttccttgctctttgcctccagctgggtgtcacaaactc--aactggattctaaggctttcatgaatgcacttatgtttcctgtggcagctgcattatgttgtgggggatgtgcatgcagaacctcccattctgtcgt a score=65818.0 s hg17.chr17_random 2244038 603 + 2618010 cttgcttatgttactcTCCTTTATG-TTTCACTTTCTCA---AATGAATGTCAAGCAGG----TGATTTTCAGATTCAAAAGTTCTAAAATAAATTGCTCAAATTTATACAT-----TATGTAAGCTGTTAATAAAATTTCTTGTAGGTGCTACATATTTGTTAAAATTTTTGGTT-GTAATTTTAAGCTCACTGTAGGCAGAAAGGAATCATTAAGATTTCTATTC---TTTTTTAGTCTGTATCTAAATGACCATATATTTTAATTCCAAATATTTACTTTATACTTCAGTAATGCTCATTGTATTTTGCAAAATTTATATTGTTCTTTTATTTGAAAATATAAGGCT----------------------------------------------------------------------------------TTTTTTAGCTCCTGAAAGCTATATTATAGTCATATAGTTTTATTATAGTATTTGATAAGAAGAGCAGCAACATATTGAGAACA-GATAAAATTCTGC--TGTCTTTTTAATGATTATTTATTAAATTCTTCTCATTAGAGCCTATTATTAATGATTGTAATGTATTTACTGTATAATTTTTCTGCAAT-TTATTAAATGCCAATGACTTCCAA--TGTCTGCTTTTCATGACTGCA----CACAGTTTAAAGCTGTAGATATCTAATGGGTTATTTTTCa s panTro1.chrUn_random 177527585 605 - 240967748 cttgcttatgttactcTCCTTTATG-TTTCACTTTCGCA---AATGAATGTCAAGCTGG----TGATTTTTAGATTCAAAAATTCTAAAATAAATTGCTGAAATTTCCACAT-----TATGTAAGCAATTAATAAAATGTCTTGTAGGTGCTACATATTTATTAAAATTTTTGGTT-GTAATTTTAAGCTCACTGCAGGCAGAAAGGAATCATTAACATTTATATTC-TGTTTTTTAGTCTGTATCTAAATGATGGTATATTTTAATTCCAGATATTTACTTTATACTGCAGTAATGCTCGTCATATTTTGCAAAATTTATGTTGTTCTTTTATTTGGAAATATAAGGC-----------------------------------------------------------------------------------TTTTTTAGCTCCTGAAATCTATATTATAGGCATATAATTTTATTATATTTTGTGGTAAGAAGTGCAGCAACATATTGAGAACATAATAAAATTATCC--TGTCTTTTTAATGATTATTTATTAAATTCTTCTCATTAGAGCCTGTTATTAATGATTGTAATGTATTTTCGGTATAATTTTACTGCAAT-TTATTAAATTCTAATGACTT--AATTTGTCTGCTTTTCATGAGTGCA----CACAGTTGAATGCTGTAGATATCTAAAGAATTATTTTTTg s canFam1.chr5 65391066 675 + 92064832 CtttctttttttttttttttttttgttttCACTTTCTGATTGAACTTATGTGAAATTCGTCTATGATTTT-AGATCCAAAAGTTCTGATAGAATGTGCTGGAATGTACACATTTTTATAAGTGAGC------CAGGGTACTTAGTAGGCACTTCATATTTATTAAAATGTTTGGTTCATAAATATAGGTTTACTTCAGACAAAAAGTAATTATTGGAATTATCATCCACTTTCTTCGAAATGTATCTGAACCGTGGTGTAACTTAATCTCAAATG-----TTTATGTATCAGCGATTCTCAGCATATTTTACAACTTTCATGGTATTCCTTTATTCAGAATGAAGAGGTTTTTTTGTTTGTTTAGtctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttctcttttttATTTTTTG-CATCTAAGGGATGGAT-TACAGTCTTTACATTCTGTGTAAGAGTAGGAGCAATATTATATTAATAACATAATGAATTTCTCTAATGTAATTTAAATGCTTATTCATTAAACT----TCATTAGAGCTT-TTATGATTGAGTGTAATGAATTTTCTGCCCAGTTTTACTGCCACATAAACACATGCCAAT-ATTCAAAA--CACTTGCTTTTCATGGGCACACAGTCATAATTTAAAATAGTAGTTTTATA--------------- a score=23378.0 s hg17.chr17_random 2244641 303 + 2618010 gcccggcatggtggctcacgcctgtaatcccagcactttgggaggccaaggtgggtggatcacgaggtcaggagatcaagaccatcctggctaccatggtgaaaccccgtctctactaaatatagaaaaaattagccgggcatagtggtgggtgcctgtattcccagctactcgagaggctgaggcaggagaatggcgtgaacccagtgggcggagcttgcagtgagccgagatggcaccactgcactacagcctgggcgacagggtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaa s panTro1.chrUn_random 177528190 303 - 240967748 gccggttgtggtggctcatgcctgtattcccagcactttgggaggccaaggcgggtggatcacgaggtcaggagatcgagagaaccctgactaacatggtgaaaccccgtctctactaaatatacaaaaaattagccgggcatagtggcaggcgcctgtattcccagctactcaggaggctgaggcaggagaatggcgtgaactcagtgggcagagttttcactgagccgagattgcgccactgcactccagcctgggcgtcagggcaagaccctgtctcaaaaaaaaatttaaaaaaaaaaa a score=856.0 s hg17.chr17_random 2244944 25 + 2618010 GGGCTTATTTTT----CATTGTATATTTA s panTro1.chrUn_random 177528493 24 - 240967748 CGG-TTATTTTC----CATTGTAAATCTA s canFam1.chr5 65391741 27 + 92064832 -GG-ATCTCTTTGATACTTGATACATCTG a score=11071.0 s hg17.chr17_random 2244969 288 + 2618010 TGTTGTATTCAGGATTTTATGC----------ATTTAATCTCTC----TTCTTATGTT-CAATTCTGTGTTGTTGTGTTTCTTTTCTTGGGGGGGTATGTTTTCTCAGATCAGTTAATTGTATTTTTGCTTTTAAAGCTTGA--TATCATG-AGTTGAATGATAATTTTTTAACTCGGT--ACACTTTA---TGACAATGTGATATTTAATTTATATGTGAATTAGCCG-TGTTT--------------GTTGCTTATACATATATCTAT----GTGTTTTTCACCTAT--------GTATGTCATTTTTTTCAT-------CTTTTTTCCTTGTTTTT-------TT-TTTT s panTro1.chrUn_random 177528517 292 - 240967748 TGTTGTATTCAGGATTTTATGCTCG------AA---AATCTCTC----TTCTTGTTTT-CAATTCCGTGTTATTGTGTTTCTTTTCTT-GGGAGTTATGTTTTCTCAGATCAGTTAACTGTATTTTTG-TTTTAAAGCTTGAGGTATCATC-AGTCGAAAGATAA-TTTTTAGCTCGGT--ACAGTTTAGTCT--CAATGTGTTGTTTAATATATGTGTGAATTAGCTG-TGTTT--------------GTTGCTTATAGGTATATCTGT----ATGTTTTTCACTTAT----GTAAGTATGACATCTTTTTC---------CTTGTTTTTTTGTTTTT-------TTCTTTT s canFam1.chr5 65391768 299 + 92064832 TGTTTTATTTAGAATTTTGGGG----------GTTAAATTTTCCCTTATTCTTGTTTTGCAATTCCATAACAATATACTTGTCTTTTA---ATAGTAGCTTCCACAACATTGGTTAATTGTGGTTTTG-TCTTTTACCTATG--TACTATGTTTTTTTATGACAT-TTTCCAACTCAAT--GCATTTTA---AGACAAAATGGGGTTTAATTCAAGTATGAATCAGCCG-TATGTCTATTTTCAGTAAAGttatatatatatttatctatataaataaatGTTACCCAT---------------GCTTTGTTCA--------TGACTTACCTTGTTCGT-------TTCTTT- s danRer1.chrNA 106812650 306 + 390413307 TGTTGAATGGAAGGTTTTGCATATGCCTGTAGATCCAATTGTTCTATGTTGTGAGTTC-AAGTCCTCTGTTTCTGTATTAATCTTTTG---------------------TCTGGTTGCTTTATCCATT-GTTGAAAGTGAGAAATATAAAT-CACTTACTACTAT-TGTGGAGCTTTCTCAACCTTTAACTCTGTCAAAAT-TTGCTTCATATATTTTTAAACC--CTGATGTTT--------------GTTACATACATATATATATAT----ATACTTTTTATCTCTCCTTGGCAAATTGGCCCTTTTATCAGTGTAAAATGTCCTTCTTTGTCTCTTATAACATTTTTT- a score=399.0 s hg17.chr17_random 2245257 5 + 2618010 AAGTT s panTro1.chrUn_random 177528809 5 - 240967748 CAGTT s danRer1.chrNA 106812956 5 + 390413307 GACTT a score=530.0 s hg17.chr17_random 2245262 8 + 2618010 TCAGATAC s panTro1.chrUn_random 177528814 8 - 240967748 TCAGATAG a score=-257.0 s hg17.chr17_random 2245270 33 + 2618010 GCtttctttttcttttttt-----------------tgtttttttctttt s panTro1.chrUn_random 177528822 16 - 240967748 GCTTTTATTTTTTTTT---------------------------------- s rn3.chrX 26411622 43 + 160775580 GCTATTTTTTTTTTTTTTTGGATACAAACCACTCCATGTTTAT------- a score=221287.0 s hg17.chr17_random 2245303 744 + 2618010 AAAGAGAATTTTAAAACAGAGTCAAATGAACAAAAATCAGTTATTTGTCCTCTTGCAGGGCGGGTAGAC--CTTCCTTCCCCACGGGTTTGAGGCTATGGCTAAGTGGTGA----------------------GCCTTGGGG---AGATGCAG-GAA---GGATCCATCCCAGGCACT-TGGCTAGAGGTAAGTAAAAATAGCCTTTGGACCAGAAGACCTGATAGTT-TGGGTACT----CGTCTGAACATAAGTCCCCATCTTCCCAGAAATGTCGTCTTTTGTCTGCAACAACTGGCTGGAGAAATA---TTTCAGAAAGATGTGTGCCTGGAACACCC-AAAGACGT-----ACCTTTCCTTTCTCTTTGGCATAGGCCTTGTAGCACTGTAGAAAGACC-AGGTTT--GCAATGGAGCCTTCAATACTCTTCATCCCTATGGATCTCAGGGGCTCATAGGGTGACAGGAGAGGAGAC-AAGCTAGCTTGGGAAGAGTCTTTGTACTTCAGCTTCT--CCCCTACTGAAACACTATATACTTGGGGCCACAGTTCATCACAAAACACACATGCT--------CTCTTTCTTTCTCTCACACCCACAT-----CTTGGGAACCCAACAACTTGATGGCAGGTAGCTCTGGGTATCCTTGGTCTGGCATTCACCCACTGGGCATCTAAGCTGTCCTAAAGCTCTTTTCAATCAC-TTCTCACTCTTTCCAGGCCCATGTGGGTAGGTGTTCCAGCCTT---CACTCTTTCAGGCTGATCATAGAGGCACAGTGTGGGAAAATCCCCTACTG s panTro1.chrUn_random 177528838 744 - 240967748 -AAGAGAATTTTAAAACAGAGTCGAAAGAACAGAAATCAGTTATTTGTCCTCTTGCAGGGCAGGGAGACAACTTCCTTCCCCACAGGTTTAAGGCTATGCCTAAGTGGTGA----------------------GTCTTGGGG---AGATGCAG-AAA---GGATCCATCCCAGGCAGT-TGGCTGGACTTAAGTAAGCATAGCCTTTGGGCCACAAGACCTGATATCT-TGGGTACT----GGTCTGGACGTAAGTCCCCATCTTCCCAGAAATATCGTCTTTTATCTGCAACAACTGGCTGGAGAAATA---TTTCAGAAAGATGTGTGTCTGGAACACCC-AAAGGCAT-----ACTTTTCCTTTCTCCTTGGCATAGGCCTTGCAGCACTGAAGAAAGACCTAGGTTT--GCAATGGAGCCTTCAACAGTCTTAATCCCTATGGAACTCAGGGTCTCATAGGGTGACAGGAGAGGAGACAAAGCTAACTTGGGAAGAGTC--TGTCCTTCAGCTTCT--CCCCTACTGAAACACTATATATTT-GGCCCACAGTTCATAGCAAAACAAACATGCT--------CTCTTTCTTTCTCTCACACCCACAT-----CTCGGGAACCCAAAAACTTGATGGCAGGTAGCTCTGGGTATCCTTGGTCTGGCATTCACCCACTGGGCACCTAAGCTGTCCTAAAGCTCTTTTCAATCAC-TTCTCACTGTTTCCAGGCCCATGTGGGTAGGTGTTCCAGGCTT---CATTCTTTCAGGCTGATCATAAAGGCACAGTGCGGGAAAATCCCCTACTG s mm5.chr10 114839 698 - 130633972 AAAGAGATTTTTA----AGAGTTAAAAGAACAGAAATCAGCTATATGTCCTCCTCCAGGGCAGAGAGAAGACCTCCTTTCCCATGGGAGTAGGACTATGGCTTGGGAGTGAGA--GGCTGGCCTG--------GCACTGGAGCCCGGGTACAGAGAA---GTGCCCATGGCAGGCATTCTTGCTGGAGCCAGGT----GTAGCCCATAGGACACAGAACCTGGTGG----------------GTCTGCGAACATGCTCTCATATTCCCAAACA----------TGTCTGCAGCTGCTGGCTAGGTTTCTGTGTTTTCTGAAAGATGTGTGTCTGG-GCATCC-AAAGCAGCCTCCGGCCTCTCCCTTCTCCTTGGCACAGGTCTTG--ATGCTGAGGGAAAGCCATGGTTT-GGCGAGGGAGCCTACAATAGTTTTCATGGCTGTAAAGCTCAGTAGCTCACAGCATAGCAGGAAAGAAGACAAA--TGACTTGGGTTGAGTCCTTATCTTTCAGCTTCTC-CCCCTACTGCACAACTGGGCACCCAGGACCATAGTTTACCG-GACGGGCACATGCA--------CGCACACACACCCACACAACCA--------CCTGGGAACTGAGCA--CGGGGTGCAGAGAGCTCTGGGT---CTTGGTCTGA---TTTCCTGCTCTGCGTGTGACCT--------GCTTTTGTCCCACACGCCCTGGCTACTTGCAGACCC-TGTCAGTG--------------------------AGGCTGACCACAAAGGCACAGTGTAGCAGAGTCCCCTGTTG s rn3.chrX 26411665 688 + 160775580 AAAGAGAACTTTA----AGAGTTAAAAGAACAGAAATCAGC----TGTCCTCTCCTAGGACAGAGAGAAGACCTCCTTTCCCATGGGAGTAAGACTATGGCTTGGGAGTGAGG--------------------AGGCTGGCC---TGGTACTG-GAGCCTGGAGACAGAGAAGCAATT-CTGCTGGAGTCAGGT----GCAGTCCATAGGACACAGGACCTGGTGG----------------GTCTGTGAACATGTCCTCATCTTCCCAAA------------CGTCTGCAGCTGCTGGCTAGA---------TTTCT---AGGTGTGTGGCTGG-GCATCTGAAAGCAGCCTCTGGCCTCTCCCTTCTCCTTGGCACAGGCCTGGTGATGTTGAGGAAAGGCCATGGTTT-GGCAGGGGAGTCTACAACAGTTGCC-TGGCTGTGACACTTAGCAGCTCCCAGGGCAGCAGGAAAAGAGACAAG--AGACTTGGGTCAAGTCTTGATCTTTCAGTTTCGC-CCCCTACTG-GCCACTGGGCACCGTGGACCATAGTTTACTG-GACGGGCACATGCACATGCATGCGCACACACAAACACACACCCACACGCACACTTGGGA----GACA--CAGGGTTCAGAGAGCTCTGGGT---CTCAGTCTGA---TTTCCTGCTCTGCATGTGACCTGCCATACAGCTCTTGTCTAGCAT-----------------GCCC---TGGGTA---CTTGCAGACCCTGACAGTC----AGGTTGATCACAAAGGCACAGTGTAGCA-AATCCCCTGTTG s canFam1.chr10 4943314 752 + 72717409 AAAGAGAATTTTAAA--AGAGTCTAAAGAACGGAAA--AGTTACTTGTCCTCCTCCAGGGCGGGGAGAAGACCTCCTTCCCCACAGGTTCGAGGCTATGGCTAGGTGATGAGGAAGGCAGGCCCGGCGCCCACACCTCGGGG---AG--ACAG-AGA---GGGCCCATGCCAGGCACT-CGGCTGGAGGCAGGT---------------------GGACCTGATGGCTGCAGGCGCCACTGGTTCTGGAAACAAGCTTTCATCTTTCCAGACGTGTTGTCTTCTGTCTGCGGTAGCTGGCTGGAGAAAGG---TTTCAGAAAGGCGTGTGCGTGGGACACCGGAAGGCAGCCTCTGATTCACCCTTTCTCCTTGGCATGAGCCTTCCGACACCGAGGAAAGGCCATGGCTTTGGCATCAGAGCCTTCAACAGTCCTC-TCTGGATCGAGCTCAGGGGCTCTCAGGGTGACTGGAGAGGAGAC-ACGCTAATTTGGG--GAGTCTCCATCTTTCAGTTTCTCTCTCCACCTGAGACACTTCTATCGTGGGGCCACCACTCAGGGTGAGacacacagacacacacagtcacacggacacacacacactcaca------TTTGGGAACCCAACT--CAGGATCAGACAAGCTGTGGGT---CTGGGTCTGACACGTGCCCACCTCGCATCTATCCCGTCCTAAAGCCCTGTGCGGCCAC-TT----CTACCCCCAGGCCCCGTTGGGTGAGAGGCTCAGCTTC---TGCTCCGTCAGGCTGGTCATAAAGGCACAGTGTAGGAAGGTCCCCTCCTG a score=34856.0 s hg17.chr17_random 2246047 57 + 2618010 TGATGGCCATTGCTGGGAAGC-AGGGAAGGTTA-------------AGGGCCCACTGCTGCCCAAGGCTAG s panTro1.chrUn_random 177529582 57 - 240967748 TGATGGCCATTGCTGGGAAGC-AGGAAAGGCTA-------------AGGGCCCACTGCTGCCCAAGGCTAG s mm5.chr10 115537 56 - 130633972 GGATGGCCGTTTCTTGG-AGC-AGGAAGGCTAA-------------GGGGCCCGCAGCTGCCCAAGGCTGG s rn3.chrX 26412353 56 + 160775580 GGGTGGCCATTTCTTGG-AGC-AGGAAGGCTAA-------------GGGGCCCGCAGCTGCCCAAGGCTGG s canFam1.chr10 4944066 57 + 72717409 GGATGGCCATCGCTTGG-AGCGGGGAAGGCTAA-------------GGGGCCCGCAGCTGCCCCAGGCTGG s danRer1.chr9 28040182 70 - 28422069 TGGCAGTCAGTGCTACTCAAC-ATGGAGGTTTAGCGTATGGATTATGGAGCCCTGAGTTGTTGGAGTCTGC a score=61941.0 s hg17.chr17_random 2246104 60 + 2618010 TGCAGAGGCCCTCTGCTCCTCCACTCATCTCCTCAAAGAATGATATCAGGTGCAGCAGCT s panTro1.chrUn_random 177529639 57 - 240967748 TGTAGACACCCTCTG---CTCCACTCATCTCCTCAAAGATTGATATCAGGTGCAGCAGCT s mm5.chr10 115593 57 - 130633972 TGTAGACATCATCAG---TTCCACTTAGCTCCTCGAAGACTGGAATCAGGTTCAGCAACT s rn3.chrX 26412409 57 + 160775580 TGTAGACATCATCCG---CTCCACTCAGCTCCTCGAACACTGGAATCAGGTTCAGCAACT s canFam1.chr10 4944123 57 + 72717409 TGTAGACATCCTCTG---CTCCGCTCAACTCCTCAAAGATGGGGATCAGGTTCAGCAGCT s fr1.chrUn 122619380 57 + 349519338 TGTAAACGTCCTCCT---CCTTGCTGAGGCCCTCCAGCAGGGGGATCAGATCCAGCAGCT s danRer1.chr9 28040252 57 - 28422069 TGTAGACGTCTTCAG---CTTGGCTTAACTCTTCAAATACTGGGATGAGGTGAAGCAGCT a score=6142.0 s hg17.chr17_random 2246164 18 + 2618010 GC----TGTCTGGAATGTTATC s panTro1.chrUn_random 177529696 18 - 240967748 GC----TGTCTGGAATGTTATC s mm5.chr10 115650 19 - 130633972 CTG---TATCTGCCATGTCATC s rn3.chr11 79372855 18 + 87800381 --AG--TGTCACTCATGTTATC s canFam1.chr10 4944180 19 + 72717409 ---CCGTGTCTGCCATGTCATC s fr1.chrUn 122619437 19 + 349519338 ---CCGTGTCCGTCATGTCGTC a score=20447.0 s hg17.chr17_random 2246182 18 + 2618010 AAACCAGGACTGCACAGG s panTro1.chrUn_random 177529714 18 - 240967748 AAACCAGGACTGCACAGG s mm5.chr10 115669 18 - 130633972 AAACCAGGACTGCACAGG s rn3.chr11 79372873 18 + 87800381 AAACCACGAGGCCACTGG s canFam1.chr10 4944199 18 + 72717409 GAACCACGACTGCACGGG s fr1.chrUn 122619456 18 + 349519338 AAACCAGGACTGCACCGG s danRer1.chr9 28042290 18 - 28422069 AGAGCAGGAGAGCGAGGG a score=184789.0 s hg17.chr17_random 2246200 173 + 2618010 -----CACTGCATTCTCTGTGTGGAAGA-GGTAAGAAGCAGGCTAGTTGTCCAGGAT--GAGTTTTCCTCAGGTCCCTCCCCAGATGGCTGACGTTCTTGACATAGCAGCCCTGGTGAAACAAACATGACTCATGGGTCAGGCAGCCCCAAACCATCCCATACCCGTCCAGCTCACCCGTC s panTro1.chrUn_random 177529732 176 - 240967748 -----CACTGCATTCTCTGTGTGGAAGACGTTAAGAAGCAGGCGAGTTGTCCAGGATGAGAGTTTTCCTCAGGTCCCTCCCCAGATGGCTGAGGTCATTGACATAGCAGCCTTGGTGGAACAAACGTGACTCATGGGCTAGGCAACTCCAGAACACCTCACACTGGTCCATCACACCCATC s mm5.chr10 115687 175 - 130633972 -----CACTGCATTTTCTGGGTGGAAGA-TGTAAGATGCAGGGGAGTTGTCCAGGATGACAGTTTTCCTCAGGTCCCTTCCCAGGCGGCTGAGGTCCTTGACATAGCAGCCCTGGTGGAACACACAAGCCTCTCGGAACAGGCGGGCCCGGAACACCCCGCACCGGTCCAGGAGATCAGTC s rn3.chr11 79372891 175 + 87800381 -----AACGGCATTGTCTGGATGAAAGA-CGTATGAGGCGGGTGAGTTGTCTAAGATTAGCACCCGCCGCAGGTCTCGGCCCAGCCTGCTCAGGTCTTTTACGTAGTTTCCCTGATGGAAGACACAGGACTCTCAAAACAGCCTGGTACAGAAGGCTCCCCACTTGTCCAGCAGATCAGCT s canFam1.chr10 4944695 175 + 72717409 -----CACTGCATTCTCCGGGTGGAAGA-TGTAGGAGGCGGGCGAGTTGTCCAGAATGAGGGTTTTCCTCAGGTCCCTTCCCAGGCGGCTGAGGTCCTTGACGTAGCAGCCCTGGTGGAACACGCAGGACTCCCGGAACAGGCGGGCCCGGAACACCCCACACCTGTCCAGCAGGTCGGTC s fr1.chrUn 248106168 175 + 349519338 -----CACAGCATTGTTGGGGTGGAAGA-TGTAGGAGGCAGGAGAGTTGTCCAGGATCAAGGTCTTGTGAAGGTCTCTGCCCAAACGACTTAAGTCCTTCACGTAGCAACCCTGGTGAAAAACGCAGGACTCTCGGAACAATCTAGTCCGAAACACACCGCACTGGTCCAGGAGGTCCGTC s danRer1.chr9 28042308 180 - 28422069 CGACCCACAGCGTTCTCAGGGTGGAAGA-TGTAGGAGGCAGGAGAGTTGTCCAGGATCAGGGTTTTGTGGAGCTCACGGCCAAGGCGACTCAGGTCTTTCACATAACAGCCTTGATAGAAGACACAAGATTCACGGAAGAGACGCGTCCGAAACACACCGCACTGATCCAGCAGGTCTGTC a score=-8116.0 s hg17.chr17_random 2246373 39 + 2618010 ACAGGATCTGCCTACTTGTTCAGGCTGGGAAG-------------------------------------AAGAGAG-------------------------------------------------------- s panTro1.chrUn_random 177531235 39 - 240967748 ACAGGATCTGCATACTTGTTCAGGCTGGAATG-------------------------------------AAGAGAG-------------------------------------------------------- s mm5.chr10 115862 28 - 130633972 ACAGGGTCAGCATACTTGGCCAAGCTG------------------------------------------------G-------------------------------------------------------- s rn3.chr11 79373066 28 + 87800381 ACAGGGTTTGCGTACTTGGCAAGACGG------------------------------------------------G-------------------------------------------------------- s canFam1.chr10 4944870 39 + 72717409 ACCGGGTCGGCGTACTGGGAAGAGAGGAGAGG-------------------------------------AGGAGAG-------------------------------------------------------- s fr1.chrUn 248106343 47 + 349519338 ACTGGATCTGCATACTATTGGGGGGTGGGGGG-----------------TGGGGG------------TAAGGAGAA-------------------------------------------------------- s danRer1.chr9 28042488 132 - 28422069 ACAGGGTCTGCATACTAGCACAGCCGTGGGTTACTACACAACTCTAGAATGCTAGCCAACAAGCATCTAATGAGGGCTTTCTACTCTTATTTTCTACAGGAATGTTATGTTTCCATACCTTAGCAAGGCTAG a score=8497.0 s hg17.chr17_random 2246412 6 + 2618010 CAATGA s panTro1.chrUn_random 177531274 6 - 240967748 CAAAGA s mm5.chr10 115890 6 - 130633972 CAGTGA s rn3.chr11 79373094 6 + 87800381 CAGTGA s canFam1.chr10 4945311 6 + 72717409 CAGTGA s fr1.chrUn 248106392 6 + 349519338 CAGGGA s danRer1.chr9 28042620 6 - 28422069 CAGTGA a score=1433.0 s hg17.chr17_random 2246418 5 + 2618010 CGAAA s panTro1.chrUn_random 177531280 5 - 240967748 AGAAA s mm5.chr10 115896 5 - 130633972 AGAGA s rn3.chr11 79373100 5 + 87800381 ACAAC s canFam1.chr10 4945317 5 + 72717409 AGAGC s danRer1.chr9 28042626 5 - 28422069 ACAGA a score=73293.0 s hg17.chr17_random 2246423 66 + 2618010 ACACATTTAAACATTTCCTCCATTCATGTCAGGAACTCATCC-ATATAAGGCCTCATGAGCACATGG s panTro1.chrUn_random 177531285 57 - 240967748 ACACATTTAAACAGTTCCTCCAGTCATCTCAGGAACTCATCC-ATATAAGGCTTCATG--------- s mm5.chr10 115901 67 - 130633972 ACACATTCGAAGAGCTCCCCCATCCGTCTCAGGAACTCATCCGACGTAAGGCCTCTTGAGCACATAC s rn3.chr11 79373105 66 + 87800381 ACATACTCAAAGAGCTCGCCCATTCGCTGTAGGAACTCATCT-ACGTGGGGCCGTTTCAGTACATAG s canFam1.chr10 4945322 66 + 72717409 ACACATTCAAAGAGTTCCCCCATCCGTCGCAGGAACTCATCC-ACATAAGGCCTCTTAAGCACATAC s fr1.chrUn 248107012 66 + 349519338 ACACATTCAAACAGCTCTCCCATCCTCTGCAGGAACTCGTCC-ACGTGTGGCCTCTTCAACACATAG s danRer1.chr9 28042631 66 - 28422069 ACACATTCAAACAGTTCCCCCATCCGCTGGAGAAACTCATCC-ACGTACGGCCTCTTCAACACATAC a score=7812.0 s hg17.chr17_random 2246489 10 + 2618010 ATCTGGTGCA s mm5.chr10 115968 10 - 130633972 ACCTGGTGCG s rn3.chr11 79373171 10 + 87800381 ACCTGGTGAA s canFam1.chr10 4947608 10 + 72717409 ACCTGGTGGG s fr1.chrUn 248107392 10 + 349519338 ACCTGGTGCG s danRer1.chr9 28042697 10 - 28422069 ACCTAAAACA a score=422.0 s hg17.chr17_random 2246499 1 + 2618010 T s mm5.chr10 115978 1 - 130633972 T s rn3.chr11 79373181 1 + 87800381 C s canFam1.chr10 4947618 1 + 72717409 T s fr1.chrUn 248107402 1 + 349519338 T a score=62600.0 s hg17.chr17_random 2246500 48 + 2618010 GGTCCCCTCAAGCTCTACAGGCACTAGGCAGTCAGCATTGCTGATTGG s panTro1.chrUn_random 177531342 47 - 240967748 -GTCCCCTCAATCTTTACAGTCACTAGGCAGTCAGCATTGCTGATTGG s mm5.chr10 115979 48 - 130633972 GGTCCCCTCAATCTCTACAGGCACTATGAAGTCAGCATTGTTGATCGG s rn3.chr11 79373182 48 + 87800381 CACTCCATCAATCTCCACTGGGATGATGAAGTCAGCGTTGTTTACTGG s canFam1.chr10 4947619 48 + 72717409 GGTCCCCTCAATCTCTACAGGCACTACGAAGTCGGCATTGTTGATTGG s fr1.chrUn 248107403 48 + 349519338 AGTCCCCTCAATTTCCACAGGCACAATAAAGTCGGCGTTGCTGATGGG s danRer1.chr9 28046938 48 - 28422069 GGTCCCCTCAATCTCCACAGGCACAATGAAATCTGCATTGCTTATTGG a score=112054.0 s hg17.chr17_random 2246548 88 + 2618010 CTTAAAGGAGCTATGCACAAGGGTTTCATCCAGGTCAGTGACCATACAGATCCTTCCTTGATTTTTCTCTGTCACCTCTGGGAGCAGG s panTro1.chrUn_random 177531389 88 - 240967748 CTTAATGGAGCTATGCACAAGGGTTTCATCCATGTCAGTGACCATACAGATCGTTCCTTGATTTTTCTCTGTCACCTCTGGGAGCAGG s mm5.chr10 116027 88 - 130633972 CTTAAAGGAACTGTGCACAAGGGTCTCATCCAGGTCAATGACCACGCAGATCCTGCCTTGATCTTGCTCTGTCACCTCGGGGAGCAGG s rn3.chr11 79373230 88 + 87800381 CTTGAAGGAGCTGTGCACCAGGGTCTTGTCCAGGTCGATGACAACGCAGATCTTGTCTGAGTCCTGGGCCTTGACCTCGGGAAGCAGG s canFam1.chr10 4948157 88 + 72717409 CTTAAAGGAGCTATGCACAAGGGTTTCATCCAAGTCAATGACCACGCAGATCCTTCCTTGATCTTCCTCTGTCACCTCTGGGAGCAGG s fr1.chrUn 248108404 88 + 349519338 CTTGAAGGAACTGTGCACCAGCGTCTCATCCAGGTCTATGACCACGCAGATCTTTCCCTGGTCCTGGTCTTCCACGGCAGGCAGGAGG s danRer1.chr9 28047165 88 - 28422069 CTTAAAGGAGCTGTGCACCAGTGTTTCATCCAGATCTATGACCACACAGATCTTCCCCTGGTCGTGAGAGGTCACTGCTGGCAGCAGA a score=10617.0 s hg17.chr17_random 2246636 17 + 2618010 CAGGTTCCTGGGATCTG s panTro1.chrUn_random 177531477 17 - 240967748 CAGGTCCCTGGGATCTG s mm5.chr10 116115 17 - 130633972 CAGGTCCCAGGGATCTG s canFam1.chr10 4948245 17 + 72717409 CAGGTCCCCGGGATCTG s fr1.chrUn 248108492 17 + 349519338 CAGATTTCATGCTGCTG s danRer1.chr9 28047253 17 - 28422069 CTCTCGCCTGGTATCTG a score=4140.0 s hg17.chr17_random 2246653 7 + 2618010 ATAAAAC s panTro1.chrUn_random 177531494 7 - 240967748 ATAAAAC s mm5.chr10 116132 7 - 130633972 ATAAAAC s canFam1.chr10 4948676 7 + 72717409 ATAAAAC s fr1.chrUn 248108509 7 + 349519338 TCAGGAC a score=12930.0 s hg17.chr17_random 2246660 30 + 2618010 TGATATTGGAGACGCTGGAGCTGATCCGAC s panTro1.chrUn_random 177531501 30 - 240967748 TGATACTGGAGACCCTGGAGCTGATCCGAC s mm5.chr10 116139 30 - 130633972 TGGTACTGGAGACACTGGAGCAGATCGGAC s canFam1.chr10 4948683 30 + 72717409 TGGTACTGGAGGCAGTGGAGCAGATCCGAC a score=-155.0 s hg17.chr17_random 2246690 1 + 2618010 A s panTro1.chrUn_random 177531531 1 - 240967748 T s mm5.chr10 116169 1 - 130633972 T a score=40155.0 s hg17.chr17_random 2246691 127 + 2618010 TAGCAATGGTGTTGACTCCCTCCTTATGTGTGGA----TTGCTCAGCGGGGGAACTTGACTGTCCAACATGCTGGGTGCAAGAACAGCAGAAAGGGGACTTTTAAGATGTGGCAAACATGAGGCCTCTTCG s panTro1.chrUn_random 177531532 127 - 240967748 TAGCAATGGTGTTGACTCCCTCCTTATGTGTGGAGAAGT----CAGTGGGGGAACTTGACTTGCCAACATGCTGGGTGCAAGAGCAGCAGAAAGGTACCTTCTAAGATGTGACAAATATGAGGCCTCTTCG s mm5.chr10 116170 123 - 130633972 TGGCGATGGTGTTGGCCTCCTCCTTGTGTGTGAG-------CTCAGTGGAAGAGCTGGACTGGACAACATGCTGTGTGTGGAAACAGCACAAGAGGGCCTT-GAAGATGCTGCGGCCACGGGGCTTCTTAG s canFam1.chr10 4950413 126 + 72717409 TAGCAATGGTGTTGGCTTCCTCCTTGTATGCGGA----GAGCTCAGTGGAAGAGCTTGACTGGCCAACATGCTGGGCACGAAAACAGCAGAAAAAGGCCTT-GAAGATGTTCCGTCCACGAGGTTTCTTAG a score=5799.0 s hg17.chr17_random 2246818 21 + 2618010 GAGAGGACTTTGGAAACCAGG s panTro1.chrUn_random 177531659 21 - 240967748 GAGAGCACTTTGGAAACCAGG s mm5.chr10 116293 20 - 130633972 GCGAGGAC-TTGGAGACTAGG s canFam1.chr10 4950539 20 + 72717409 GAGAGGAC-TTGGAGACCAGG s danRer1.chr9 28052835 16 - 28422069 GACAGAGCTTTGCCTA----- a score=4365.0 s hg17.chr17_random 2246839 3 + 2618010 CCT s panTro1.chrUn_random 177531680 3 - 240967748 CCT s mm5.chr10 116313 3 - 130633972 CCT s canFam1.chr10 4950559 3 + 72717409 CCT s fr1.chrUn 248110047 3 + 349519338 CCT s danRer1.chr9 28052851 3 - 28422069 CCT a score=54251.0 s hg17.chr17_random 2246842 69 + 2618010 -TGCTTGGTAAGGACCAGGGCATCTTCCCTCCATGCCTGGGTGATGATGGAGCCTTGTTCCATCTAACAA s panTro1.chrUn_random 177531683 69 - 240967748 -TGCTTGCTAAGGACCAGGGCATCTTCCTTTCATGCCTGGGTGATGATGGAGCCTGCTTCCATCTAACAG s mm5.chr10 116316 69 - 130633972 -TGCTTGGTGAGCACCAGGGCGTCTTCCCTCCGCGCCTGGGTGATGATGGAGCCGTGTTCCATCTAACAA s canFam1.chr10 4963829 69 + 72717409 -TGCTTGGCGAGCACCAGGGCGTCTTCCCTCCGCGCCTGGGTGATGATGGAGCCGTGTTCCATCTAACAA s fr1.chrUn 248110051 65 + 349519338 -TTTTCGGGGA-CACCGAGACGTCTTCTTTCTGGACCTGGGTGATAATAGAACT---TTCCATTTGACAA s danRer1.chr9 28052854 66 - 28422069 GTTTTCGAAGA-CAACCGAGTATCCTCTCTCTGCACTTGAGTGATGATAGAACT---TTCCATCTAACAA a score=-11660.0 s hg17.chr17_random 2246911 14 + 2618010 TCCTGAGGGC---------------------------------------------------------------------------------------------TGGG s panTro1.chrUn_random 177531752 57 - 240967748 TCCTGAGGGCTTG--------------------------------------------------GCTGGCTGGGTGGGAAGACAGCGGGCACGTTGGGCTGTATTGGG s mm5.chr10 116385 49 - 130633972 TCCCGCGGGCCCGG----------------------------GCTGGCTGGGCGGGAAGACGCGCGGGCGGGC------------------------------TGGG s canFam1.chr10 4963898 57 + 72717409 ccccgcgggcccgggctggctgcgcgcggggccggcgggcgcgcAGGCggggc--------------------------------------------------tggg s fr1.chrUn 248110116 14 + 349519338 TCACGGAGCCCTGG--------------------------------------------------------------------------------------------- a score=61846.0 s hg17.chr17_random 2246925 193 + 2618010 CTGGGGGGCATGGGCTGGGGCCT-----GATTCAGTTC-----------------------------------------------------CCGAGATTCTGACCTCCACAGCTGTTCACATACCCCTTCTCCTTTCCAT-ACTGGTCGGGAAGGGAGGTGGCTTGTAGGGAGGGTGGTTGGCCTTGGCAGCAGCTCCCCAGTGTGCCCCCATCCCCGATTCCCCCAGCGAGAGCTTCAAGATCCTCAGTTT s panTro1.chrUn_random 177531809 193 - 240967748 CTGGGGGGCATGGGCTGGGGCCT-----GATTCAGTTC-----------------------------------------------------CCGAGAGTCTGACTTCCACAGCTGTTCACATACCCCTTCTCCTTTCCATCACAGGCCGGGAAGGGAGGCGGCCTGTAGGGACAGTGGACGGCCTTGGCAGCAGCTCCCCAGGGTGCACCCAGCCCCAATT-CCCCAGTAGGAGCTTCAGGATCCTCAGTTT s mm5.chr10 116434 196 - 130633972 CTGGGGGGCCTGGGCGGGGGCCCGTCGGGCTCCGGCTC-----------------------------------------------------CCGAGACTCCGACTCCCGCAGCTGTTCACAT-CCCCCTCGCGTTTCCTCCCCGGGCCGGGAAGGGAGGCGGCCTGCACAGAGGGCGGGCGGGCCAGGCGGCGGCTTCCCCG-GTGCCCCCAGCCCCGATC-CCCCGGTGGCAGCTCCGGGCTCCTCAGTTT s canFam1.chr10 4963955 245 + 72717409 ct-gggggcctgggcgggggccc-----gctccggctccggctgcggctgcggctgcggctgcggctgcggctgcggctccggctgcggctCCGACGCTCGCGCTCCCACAGCTGCTCACATCCCCGCCCTCGCGTCCTCCCCGGGCCGGGAAGGGAGGCGGCCTGTACGGAgggcgggcggcccgggcagcggctcccccgggtgcccccggccccgATC-CCCCGGCAGCAGCTCCGGGCTCCTCAGTTT a score=4111.0 s hg17.chr17_random 2247118 20 + 2618010 GGGTCTAA-CATAGAGAATCC s panTro1.chrUn_random 177532002 21 - 240967748 GGGTCTAATCATAGGGAATCC s canFam1.chr10 4964200 20 + 72717409 GGGTCCAA-CATGGAGAATCC a score=273046.0 s hg17.chr17_random 2247138 3517 + 2618010 ACTAGAAACACAt------ttttttttcaagttttattttaagttcaggggtccatatgTGATAAAGtttatttttcaacttctattttaagtttaggggtccatgtgcagactatgcaggtctcttacatacataaatgcgtaccactgtggtttactgcacagatcatctcatcacccaggtaccaagcccagcatccgcagctattcttcctgatgctctccttcccctcccccatgccatgaaacaggtgtccagtgtgtgttgttcttcctgatgtgtccatgtgttctcattgatctgcttctgctaataagttagaataataataggcggtgtttggttttctgttcctgcattagtttgctgggagtaatggcttcaaattccaaccatgtccctgcaagggacatcatctcattatattttatggcttcatagtgttccatggtgtatgtgtaccacatttcctttatccagtgtatcattgatgggcatgtagattgattacatgatgttgctattgtaaatagtgctgcaatgagcatttgtatacatgtatttttaaaatagaattatttatattcctttgggt---------gtaatggtattgctgggtcaaatggtagttctgcttctaggtctttgaggaatctccacactctcttcctcaatgcttgaaataatttacactcccaccaacagtgtaaaagtgttcccttttctccacaacctcgccagcatctgtttt--ttttttttttactttttattaatagccattataatttgtgtgagatggtatctcattatggttttgatttgtatttatgcagttatcagtgatgttgagcttttcatgtttgttgggcacatgtatgtcctcttttgagatatgtctgttcatgttctttgacccttttttaatggggccttttttttttcttttgtaaattttgttaaattcctcctagattctggatattagacatttgtgagatggataggttgcataatttttctcccattctctaggttgtctgctctgatgatagtttctttggctccgcagaagctctttagtttaattagaccccattagtcaatttttgcttttgttgctatagctttttgcctttctgtcataaagtcttttctcatgcctatatcctgaatggtattatctagattttttcttctaagggttttatagttttgggttgtacatttaagtctttaatccatcttgagttaatttttgtacatggtgttaagaagggttccagtttaaattctctgcatatggctagccagttctcctggcaccattttttgaatagggacacctttccctaattccttgtttttgttaac-tttgtcaaagatcaggttgttgtaggtttttggctttatttctaggttctctactttgtttcatttgtctatgtgtctgtttctataccagtaccatgctgtttttgttactgtactcttctagtatagtttgaagttaggtagagtgacacttccagctttttttttttttcttaaggttggcttggctatttgggctcttttttggttccatatgaacttt-aaaagtttttatttttctaattctctgaagaatgtcagtagttcaatgggaatagcattgaatctatgaattacttagggccatatgcccatattcatgatactgattcttcctctccatgagc--atggaatatttctccatctgttttgtgtccactctgatttctctgagcagttgtttgtggttctccttgaagaggtccttcactttctttcttagctgtattcctagg-tatttttttctctttgtagcaaatgtgaatgaaag-ttcattcatgatttgtctccctgcttgcctgttgtttgtgcatgggaatgctagctacttttgcacattgattttatatcctgagattttgctactgttgcttatcaccttaagaagctttgggcctgagacaatgaggttttctagatgtaggatcaggtcatctgcaaacaaagataatttgacttcctctctttctattagaatactctttatttcttcctctggcctgattttcctggccaaggcttctgatactata------ttg-aatggtagtggtgaaagagggcattcttttcttgtgccagttttcaggtggaacgtttctagcttttgcacattcagtatgatattggctgtgggtttgttgtatatggctcttattattttcaggtatgtttcttcacttcctagtttattgagaattttaaacctgaaggaatgctgaattttattggatgctttttctgcatttattgagataatcatgtggtttttgt--atttagttctctttatgtgatgagtcacatttattgatttgcatatgttgaatcaaccttgcatcctggggacaaagccaactccattgttgcggatgaactttttaatgtgctgctggatttggtttgccagtattttattgaggatttttgcacagtgtttaccaaagacattggcatgatg------------------tgttgttgttgttgttgttgtagtatctatgttaggttttggtatctggatgatgctggcctgatagaatgagttagagagaacttctttgtcttcaattttttttggatggttttaggagaaaaggtaccatctcctctttgtacctctgctcaaattcagcttgcttggtaggctagtttttactgcctcagtttcagaacacattattgatctattcagggttcagtcttgtggagggtttattttgcaaggaaattgtctatttcttctagattttctggtttatgtgcatacatatgtttatagtgttctctgattgttgttcatatttccatgggatcagtgatgatatctcccttattatttctaattgtgtttggttctcctttcttttcttatttatttgcctagctagtgttccatcta-gtttattaa---tttttttcataaaaacagctcctggatttgttga---------------cttttttttttggaagag-ttttcagtgtctctatctccctcagctctactttgatctt-ggttatttcttgttttctgctacctttctggttagttttcacttggttttctagttcttttaatcaagatgtta-ggctgttaattttagatc-ttctagtttctcttttttttcttcttgtggcagagtctcactctgtcacccaggctggagtacagtggcatgatctccgctcattgcaacctccacttctcagttttaagtgatttctgctgtctcagcttcctgagtagctgggattacagatgtgcatcacaaaaaccagctaatttttgaattttttttgtagaggtggggttttgttgtgtggtccagactggtcttgaacatctggccttaagtgatttgcctaccccagcctcccaaagtgctggaactacaggcatgagccaccacacccagccctttctatctttttgatgtggacattagtgctataaatttccctctTTTCTTG s panTro1.chrUn_random 177532023 3553 - 240967748 AC------CTCATACTCAGTGTTTTTTCAAGTTTTATTTTAAGTTCAGTGGTCCATATGTGAT-AAGCttttttttcaacttttattttaagtttaggggtccatgtgcaggataagcaggtctcttacatagataaacgtgtgccattgtgctttactgcacagatcatttcatcacccaggtactaagcccagcatccacagctattcttcctgttgctctccttcccctccctcatgccatgaaacaggtgtccagtgtgtgttgttcttcctgatgtgtccatgtgttctcattgatctgcttctgctaataagttagaataataataggtggtgtttggttttctgttcctgcattagtttgctgggagtaatggcttcaaattccaaccatgtccctgcaaacgacatcatctcattacattttatggcttcatagtgttccatggtgtatgtgtaccacattttctttatctagtgtatcattgatgggcatgtagattgattacatgacgttgctattgtaaatattgctgcaatgaacatatgtatacatgtatatttaaaatag----atttatattcctttgtgtgtatgcccagtaatagtattgctgggtcaaatggtatttctgcttctaggtctttgaggaatctccacactctcttccacaatgcttgaaataatttacaatcccaccaacagtgtaaaagtgttcccttttctccacaacctcaccagcatctgtttttatttcttttttactttttattaatagccattataatttgtgtgagatggtatctcattgttgttttgatgtgtatttatccagttatcagtgatgttgagctttccctgtttgttgggcacatgtatgtcttcttttgagatatgtctgttcatgtcctttgaccactttttaatggggttgtttgtttttctcttgtaaatt---ttaaatccctcatagattctgtgtattagacatttgtcagatgaatacgttgcaaaatttttctcccattctctagcttctctgctctgatgatagcttctttggctctgcagaagctctttagtttaattagaccccattagtcaatttttgcttttgttgctatttcttttggtctttttgtcatcaaatccttcctcatgcctatatcctgaatggtattatctagattttttcttctaaggtttttatagttttgggttttacattcaagtctttaatccatcttgagtcaatttttgtctatggtgttaggaagggttccagttttaattctctgcacatgactagccagttatcctagcaccatttattgaatagggagacttttccctaattccttgtttttgttgacttttgtcaaagatcaggttgttgtaggtttttggctttatttctatgctctctattttgtttcatttgtctatgtgtctgtttctataccagtaccatgctgtttttgttactgtactcttctagtacagtttgaagttaggc--aatgaccctttcagc-ttttttttttttcttaaggttggcttggccatttgggctcttttttggttccatatgaattttaaaaagttttt-tttttctaattatctgaagaatgtcagtagttcaatgggaacagcattgaatctataaattacttagggcaatgtgctcatattcgtggtactgattcttcctctccatgagcgaatggaatgtttctccatttcttttgtgtccactctgattcctctgagtagttgtttgtagttctccttgaagatatccttcactttccttcagagctgtattccttggatatttttttctctttatagcaaatgtgaatgaaagattcattcatgatttgtctccctgcttgcctgttgcttgtgtatgggaatgctagctacttttgcacattgattttatatcctgagattttgctactgttgcttatcaccttaagaagctttggggctgagacgaagaggctttctagatattgggtcaggtcatctgtaaacaaagataatttgacttcctctctttctatttgaatactctttatttcttcctctggcctgattttcctggacaaggtttccga------acgggagttgtaatgggagtggtgagagagagcatgcttttcttgtgccggttttcaaggggaatgtttccagcctttacacattcagtatgatattggctgtgggtttgttgtatatggctcttattattttgaggtatgtttcttcagttcctagtttattgagaattttaaacgtgaaggaatgttgaattttactgggtgctttttctgcatctattgaggtaatcatgtggttttttttaatttagttttctttatgtgaagagtcacatttgttgatttgcatatgttgaatcaatcttgcatcctggggacaaagccaattccattgtggtggatgcactttttaatgtgctgctgggtttggtttgccagtattttattgaggatttttgcacagtgttcatcaaagacattggcatgatgtgttgtgttgtggcttgttgttgttgttgttgttgttgttgtatctatgttaggttgtggtatcaggatgatgctggcctgacagaatgagttagagagaacttctttgtcttcaattttttttggatagttttaggagaaaatgtactatctcctctt--tacctcaagtcaaattcagcttgcttggtaggctagttcttactgcctcaatttcagaacacattattgatctattcagggttcagtcttgtggagagtttattttgcaaggaaattgtccatttcttctagattttctggtttatgagcatagaggtgcttatagtattctctgatcgttgttcttatttccatgggatcagtgatgatatctcccttattatttctatttgtgttttgtt---ctttcttttcttatttatttgcctagctagtgttccatctaggtttattaattttttttttcataaaaacagctcctggattggttgagttattagttattattttttttttttggaagagtttttcagtgtctctatctccttcagctctactctgatcttgggctatttcttgttttctgctagctttcaggtttgttttcacttggttttcttgttcttttagtcaagatgttagggctgttaactttagatctttctaat-----tttttttttttcttgtgggacagtttcactctgtcacacaggctggagtacagtggcataatctcggctcactgcaacctccacttctcggttttaagtcacttctgctgtctcagcctcctgagtagctgggattacagttgtgaatcaccacacctagctaatttttgta-tttttttgtagagatatggttttgctgt-tgg-ccaggctggtcctgaacacctggtctcaagtgatctgcctaccccagcctcccaaagtgctggaattacaggcatgagccaccatgaccggccctttctagctttttgatgtggacattagtgctataaatttccctctTTTCTTC a score=23709.0 s hg17.chr17_random 2250655 195 + 2618010 GTTTCCAGTGATTATTTTATTCTATCTTGGTGAGTCATCAGGGAAATAATCTTAAATTTACAATCAACATATAGTTTA--AATCCATATAAT-TGTGTGAGAAGAACCCTTTGTT-ATTTGAAGGTGATGTTTGAAAGATTTTCTAACTGTGCC-----TTTTAGTTA--GTCTTAAATTTCTAATTGTAGTTAAAA-ACA-TGCCAT s panTro1.chrUn_random 177535576 198 - 240967748 ATTTCTAGTGATTATTTTATTCTATCTTGGTGAGTAGTCAGGGAAATAATCTTAAATTTACAATCAACTTATAGTTTAAGAATCTAAATAAT-TATGTGAGAAGAACCCTTTGTT-ATTTGAAGGGGATGTTTG-AAGATTTTGTAACCGTGCC-----TTTTAGGTA--GTCCTAAAtttctaattgtagttaaaacacactgccat s canFam1.chr5 65392078 204 + 92064832 GTTATCAATGATTGTGTTATCCTGTCTAGGTGAGTTGTCATAAAAATAGAATTAATTTCATCATCTATTTATTG-ATA--AATTTATATTTTCTGTGTGAGAGAAACACTTTTTTGAATTGAAGGTAATTTTTACAAACTCTTATACCTCTATTATCAACTTTAATTGTTATATTTTAttcttaactgtggtcaaaacaca-tgacat a score=120799.0 s hg17.chr17_random 2250850 1593 + 2618010 TGTCATTTCTGACATTTTAAGTATATGGTTTAGAAGTGGTTAGTATAGTTCTA--TTGTTTTGCAGTAGGTTTTAGATAATTTGTGTCTTACAAAAGTAAAAGTGAATACTC-ATTACTTAtgaaagaagttagttagcttgccttaggtagatagcaagagaagagtccctggaaagtccct--------ggtcagtgcctcatccctgcataacatataaagaagcctggaaaaaatcaagctgcagacactaacaagggaactagcatatgttgttgtgcttggggacatgcccgtggctgcacagatagaaaaacctctggcccatttggataaaaacttgtagaaacctccagctcactcagataaaggaacaagaacgacctagcatagaaatgcctttgtttggccaggcacggtggatcatgcctgtaattccaacaatgtcggaggcagctgtgggcggatcatctgaggtcgggagtttgagaccagcatgaccaagatggacaaactctgtctttactaaaaatacaaaactagccaggcatggtgctgcatgcctataatcccagctacttgggaggctgaggcaggagaatcgctagaacccaggaggcggaggttgctgtgagccgagatcgcaccattgcactccaggctgggcaacaagagcaaaactgc-------aaaaaaaaaataa--aaaaaaataaa--aaaagaaagtacatctcaaaaaaaa---gaaaga--caagaaaaaga-----aaaaaaagaagcacttttgt-ctttgtacagtcagtgggctcccaggaaaatgttccttctctttttgttggcatgggcactgtgggatctggtgcattccggtcgacactctcgtttatttggactgtaagtctgacctctatgaataattacttcagcccctgagtgctcccgggccaagctccttggccaaactttcaccttagcttctgataagtcttgggccaagctaagcagcatctatcaatcatcccttcagctcctgattgatcccgggccaaaggcctgggccaagctgagccacacgtttttcaagacagcctgtgaactaggcacgtatc-----cttcccttcccagtccataaaaaccctgga-cccagcctcgtagagggcaccactttcagacacctatctctgctggcaaagagctttcttctcttgcttcttaaactttcactccaacctcacctttgtgttcacgctccttaatctccttagaggtagaacaaagaactctggatgttatctcagactacgagagactgttacatcttggtgcactgctgagactacgacaCTTGgtttctttgagtttgactaaatgttttacatgagtgtaattatacagctttcctttttgactgtcttattttacttaacagaatgttttgaagatttgtccttattgtagtacttttcaagatttccttatttttaaggctgaatgctatcccagtgattgtacgtgccttgtttgctgaatctactcatccttaagggtacatttgcttccaggtaacatgtttgtgagtaatactacaa----------tgtgcatatatctattccatgttctgctttG-TCT s panTro1.chrUn_random 177535774 1642 - 240967748 tttcatttctaacattttaagtatatggtttagaagtggtaagtatagctctatttttttttgcaatatgttttagataatttttgtcttacaaaagtaaaagtgaatactcaattaattgtgaaacaagttagttagcttgctttagttagatagcaagagaagggtccctggaaagtccctggcccttgggtcagtgtctcatccctgcataacataaaaggaatcctggaaaaaatcaagctgcagacactaacaaggtaactagcacatgatgttgtgcttggagacatgcccatggctgcacagacagaaaaacctctggcccatttggataaaaacttgtacaaacctccagctcactgagataagggaacaagaccgacctggcatagaaatgcctttgtttggccaggcacggtggcttatgcccgtaattccagcaatttgggaggcagaagtgggcggatcacctgaggtcaggagttcgagaccagcatgaccaacatggagaaaccccgtctctactaaaaattcaaaattagccgggcgtggtgcctcatgcctgtaatcccagctacttgggtggctgaggcaggagaatcacttaaacccaggtggcggagtttgctgtggaccgagatcacaccattgcactccagcctgggcaacaagagcaaaactacgtctcaaaataaataaataaataaataaataaatgataagaaagtacatctcaaaaaaaaaatgaaagaattaaagaaaagaaaacgaaaaaaagacacgcctttgtactttgtgcagtcagtgggctcccaggaaaatgtttcttctccttttgtgggcataagcgcagtgggccctggtgcattccggtcgacactctcctttacttgaactgtaagtctgacctctgtgaataattacttcagcccctgattgctcccgggacaagctcctgcgccaagctttcactttagcttctgataagtcttgggccaatctaaatagcatctatgaatcatcccttcagctcctgattggtcccgggccaaagtcctgggccaagctgagccacacttttttcaagacagcctgtgaactaggcacatttccttctcttcctttcccagtccataaaaaccttggaccccagcctcacagaggtcaccccattcaga-aactatctctgctggcaaagagctttcttctcttgcttatcaaactttcagtctaacctcacctttgtgttcacgctccttaatctccttagaagtagaacaaagaactttcgatgctatctcagactatgagagactgttacatcttggtgcactgctgagactacaacacttggtttctttgagtttgactaaatattttacataggtgtaattatacagttttcctttttgactgtcttgttttacttaacagaatgttttcgagatttgtccttattgtagcacttttcaagatttccttatttttaaggctgaatgctatcccagtgaatatacatgccctgtttgttgaatctactcatccttaaaggtacatttgcttccaggtagtatgtttgtgagtaatgctacagtgtacataattgtgcatatatctattccatgttctgctttgccct a score=9681.0 s hg17.chr17_random 2252443 61 + 2618010 GTTTGGGATA-TTTTTCATACACTGATTCAGTA-CCATGTGTA-TTCCCTTGCTTTTGTTGTCT s panTro1.chrUn_random 177537416 64 - 240967748 gtttgggatatTTTTTCACACACTGATTTAGTACCCAtgtgtatttcccttgcttttgttgtct s rn3.chr14_random 282941 61 - 1825095 GTCCAGGACA-TTTTTCTTGTGCTTATTGAGTA-CTATGTGTA-TTTCTTTGCTTTTATTATTT a score=207103.0 s hg17.chr17_random 2252504 2642 + 2618010 CATCCGTTGATGCTACGTCCCCCaaattattgcc--acgaccagttgtaatgaagcttcacccttctgtattgtgctaggaattttacagttataggttttacattatagtcttcattcattttttaaaattgacacatgtaattgtgcatattttggggaaacaattatatatatgttttgtataacaataaaaatc--agtactt-ctatatttgttgcctcatgcatttgttatttttgtggtgagaatattcaaaagctccttctctagctattttATTTTATCTTTATGTATTAAttttttttagagacaggatcttgctctaacacccagactggtgtgcagtggtgcaatcctagctcactgtaacttcaaacagtcttctaacctcagcttcccaattagctgagactacaggaagctgccaccatgcctggctaatgttttaatttttcatacagacggggtcacactatgttgtccaggctcatcttgaacttctgacgtcaagtgattctcctacctcaatctcccaaaatgtatggattgcaagaatatgccaccgAAACTGGtctcttttagctattttgtaatatgagataacttttcattaattattattattctactgtgtaataaaaaacaaaaacttatttcccctatctaatcataacacaatacctgtgaagcagccttttcccatcctcctgcttcagtctctggtaacccctgttgtactctttgcttctatcaaccctttttttcaggttcctcaaatgagtgagataataagatcataaagtatttgtgtttctctatgtggcttattttacttaacatggtatgctcaaggttcatccatgctctttt-aactgacagaattttat-gctttcttatggctgaatagtatttcgctgtgtatatatagtacattttccttatccatttatctgttgctgtacatttgaattgattccatatataagctattataaatagttctgtaatgaacatgggaatgcaaatatctttttgacacagtaatatcctttcttttggatatacacccagaagtaaaattgctggatcatataatagatatatttttaatttctttcag-aaacctccatactattttctataatggccatactaatttacaattccaccaacaaggtatacatccactcttttttatatcctcattagttcttgatttatttatttatttatttttattatagccattct-aatgggaatgaggtggtacttcattgcagtttggatttgcatttccttggtgattagtaatgtagagcatctttttatgttccagttagccatttttgtatctctttttgacaaacatctattaagatcttttgcattttttaaattagattataagtgtattttattttgagattttaaagtttcttatatattctgaatattagccttttgtcacatgtata---tgagaacattttctgtcatcgcctaagctgtctcttcaaacttttagttgtttttttaatatgaaaaagcattttagtttgacataatgttgtttgtttattctcgattttgttgcccatgttttgaaatcttattttaataatcctttcaccgtccaatgttataaagcatttttttatgtttttctctaatagtttcataattgatggcattacatttaagtctttagttttagttgattatcatatatggcaaggtacaagggtctagtattatttttctgcatataaatatttaaatggccctgcaccatttattaaagagattagtttttctctaaagtgtgttcttggtaattttgttgacaatcagttggctttaggtgcataaattaacttctgggcttattgggcacattagtctatgtgtttgtttttatgccagtacagtgctgttttggttactgtagctttatagcaagttttgaagtttgatgaagtgatgcctttagctttgcttattttgctcaaagttgctttgtctattcagagttttttgtggatccatataaatttaaa----tttttttatttctgtcaaaaaatgtcattggtattttgataaaaatcacattaagtctgtagatcactttgggtagctatatcaacagtattcttccagtgtataaacacaatatttttt-atttattcatttgtattttatattttttatccatgttttgtcgttttcagagtagagatcttttaccttttt-agttaagtttgttgctaggtgtattagttGGGCTTCCCTAGAGAgatcatgagatcccacaataggttgtctgcaagtttgaggagcaaggagaggtggtccatgtcccaaagctgaagaacttggagtctgatgtttgagggctgcaagtgtccagcacaggagaaagatgtagtctgggagcttaggccagtctctctttttcacgtttttctgcctgctttatattcactgtcagctcattagatggtgctcacccaattaagagtggatctccctttcccagcccactgactcaaatgttaatgtcctttggcaacaccctcacagacacacccaggatcaatgctttctatcctccaatccaatcaatttgacaccctgtattagccatcaca s panTro1.chrUn_random 177537480 2626 - 240967748 ggtccgttgatgttacatcccccaaattattgcccga-gaccaattgtcatgaagcttcacccttctgtattgtgctaggaattttacagctatagattttacattatagtc----ttaattttttaaaattgacacatgtaattgtacaaattttggggaaacaattatgtatatatgttgtatagcaataaaaatcagagtacttagtgtaattattgcctcatacatttgttatttttgtggtgagaacattcaaaagcttcttctctagctatttt-ttatatctttatgtattaactttttttagagacaggatcttgctctaacacacagattggagtgcagtggtgcaatcctagctcactgtaacctcaaacaatcttctaacctcagcttcccaattagctgagactacaggaagctgcctccatgcctggataatgtttaaatttttcatagagacggggtcacactatgttgtccaggctcatcttgaacttctgtcttcaagtgattttcctacctcattctcccaaaatgtatggatggcaggaatgtgccaccacaactggtctcttttagctattttgtaatatgcgataccttttcattaattattattattctgctgtgtaacaaaaaacaaaaacttatttctcctatctaattgtaacacaatacttttgaagctaccttttaccatctccctgcttcagtctctggtaacccctgttgtactctttgcttatatcaaccctttttttcaggttcctcaaatgagtgggataataagatcataaagtatttgtgtttctctatgtggcttattttacttaacatggtatgctcaaggttcatccatgctcctttaaactgacaaaattttatccctttcttatggctgaatagtatttcactgggcatatatagtacattttccttatccatttatctgttgctgtacatttgaattgattccatatataagctattataactagttctgtaactaacatggaaatgcaaatatctttttgacacagtgatatcctttcttttgtatatacatgcaggagtaaaatcgctggatcatgtaatacatctatttttaatttctttcagaaaacctccatagtattttctatagtggccatactaatttacaattccaccaacaatgtatacattcactc-attttatatcctcattagtacttg----ttttattaatttttttttattatagccattctaaatgggagtgaggcagtacctcattgtggtttggattttcatttccttggtgattagtaatgtagaacaactttttatgttccagttagccatttttgtatcactttttgacaaacatctattaatatcttttgcattttttaaattagattataagtgtattttattttgagattttaaagtttcttatttattctgaatattagccttttgtcatatgtatagcctgaaagcattttcttttattgcctaagctgtctcttcaatcttttagt--tttttttaatatggaaaagcattttagttggacataatgttgtttgcttatttttgattttgttgcctatgttttgacatgttattttaataatccttttcccgtctaatgttataaagcatttttt--agtttttctctaatagcttcataattgatagcgttacatttaagtctttagtttgagttgattatcacatatggcaaggcactggggtctagtataatttttctgaatttaaatatttaaatggccctgctccatttattgaagagattagcttttccctaaagtgtgttcttggcaattttgttgacaatcagttggctttaggtgcataaactaacttctgggcttattgggcacattagtctatgtgtttgtttttatgccagtacagtgctgttttggttactatagctttgtagcaagttttgaagtttgataaagtgatgcctttagctttgcttactttgctcaaagtta-tttgtctattcagagttttttgtggatccacataaatttaaaatattttttctatttctgtgaaaaaatgtcattgatattttgataaaaatcactttacgtctgtagatcactttgggtagctatattaacagtattcttccagtgtataaacacaagattttttcatttattcatttgtattttatattttttatccatgttttgtcgttttcagagtagagatcttgtacccttttaagttaagtttgttgctaggtgtattaGTCAGGC-TCCCTAGAGAgatcacaagatctcacaataggttgtctgcaagttttaggagcaaggagaggcagtccacgtcccaaagctgaagaacttggagtctggtgtttgagggctggaagcgtccagcacaggagaaagatgtagactgggagcttaggccagtc-----------------tctgcctgctttatattcactggcagctgattagatggtgctcacccaattaagagtgggcctccctttcccagcccactgactcaaatgttaatctcatttgtcaacaccctcacagacacacccaggatcaatgctttctatcctccaatccaatcaatttgacagccagtattaaccatcaca a score=3049.0 s hg17.chr17_random 2255146 15 + 2618010 TTAAGTATTTTCATT s panTro1.chrUn_random 177540106 15 - 240967748 TTAAGTATTTTAATT s danRer1.chrNA 106813129 15 + 390413307 CTATGTATTTTCATT a score=123927.0 s hg17.chr17_random 2255161 1558 + 2618010 TTTGTAGCTTTTGCATatgcagaagaagaattggatgaaattcagccttgattatgatgaaaactctcaacaagttaggaatagaaggtatgtgccttaactcaataaaggccatttatgaaaaagcaatgctaactttatactgaataaggaaaagttgaaagctttctctctgagatctggaacaagacaaatcgtccaaactttcagccctcttattcaacatagtactggaagtcctagccaaggaaattaggcaagaggaagaaataaaagtcatactaat-tgaaaggatgatgtcaaatggtctctgattgtggacaaaataatcttatatgtgaaaaactctaaacactacaccaaaaactattagaactactaaacaaattctgtaacattgcagaaaattaacacagtagtagctttctgtatgatgatagcgaactatctgaaaaataaaattttaaattccgttttaatagctaccaaaaaTTAGTTATTTTGAGtttatttctttatttgtggtggagcctttctctgtcaccaggctggagcgcagtgacatgatctcagctcactgaaactcttgcctcccggattccagagattctcctgcatcagccgcctgagtgtctggaactgcaggcatgtgccaccaccgccaactaatttttgtttgtatttttagtagagacgttgtttccccatgttggccaggatggtcttgatatcctgaccttgtgattcacttgtctcagtcacccaaagtgctgggattacaggtgtgagccaccacacccagccttgagtttatgtttttatctgttgcaagttaaagtctaactttgttagtttttccttgta-aatttttattattcccaatactgtttgttgaagagactgttctttcctttttgtg-attcttggaacacattttaaaaatatgtttactatacccatgaggacttatgtctggactctctcatctgtttcatcattcatttgtctttatgtcagtaccaaactgttttgattactatatgtt-catagtatgtttagaaaatagaaagtatgatgcctctgtctttatatttttttcccaatattgtttggctgtttgtgatcacttgaaattccataaaaattgtagaatattttaaaacttctgcaaaaagtttcattggtattttgatagaaagtatattgaatcagctgagggttgtggctcatgcctgtaatcccagcactttgggaggctgaggaaggtggaacacctgaggtcaggagtt-ccagaccagccatggagaaaccccatctctactaaaaatacaaaattagccaggtgtggtggcacatgcctgtattcccaactactcaggaggctgaggcaggagaacagcttgaacccaggaggtggaggctgcagtgaactgagatcacaccattgcactccaccttgggcaacaagagcaaaactccgtctcaaaatacaaagaaagaaaagaaaagaaagaacattgaatccgtagaccacttttggtagtagtgacattttaac s panTro1.chrUn_random 177540121 1561 - 240967748 TTTGTACCTTTTGCTTatggagaagaaaggttggatgaaattcaacattcattatgatgaaaactctcaacaaattaggaatagaagttatgttcctcaacacaataaaggccatttatgacaaagcaatgctaacattatactaaataaggaaaagctgaaagctttctctctgagatctggaacaagactaatcatccccactttcagacctcttattcaacatagtactggaagtcctagccaaggacattatgcaagaggtagaaat-aaagtcatactaataggaaaggatgaagtcaaatggtctctgattgtggacaaaataatcttatatgtgaaaaactctaaacactacaccaaaacctaatagaactactaaacaaattctgtaacattgcagaaaatcaacagagtagcagctttctgtatgctgatagcaaaatatctgaaaaataaagtttaaaattccattttaataactaacaaaaaTTAGTTATTTTGAGtttatttctttatatgaggtggagtctttctctgtcgccaggctgaagcacagtggtgtgatctccgctcactgaaactcttgcctcccgggttccagagactctcctgcttcatcctcctgagtggctggaactataggcctgtgccaccaccaacaactaatttttgtttgtatttttagtagagacgttgtttccccatgttggctaggatggtcttgatctccttaccttgtgattcacttgcctcagcctcccaaagtgctgggattacaggtgtgagccaccacacccggccttgagtttatgtttttat-tggtgcaaggtaaggtctaactttgttattttttccttgtacaatttttattattcccaatactgtttgttgaagagactgttctttccttattgtgaattcttggaacagtttttaaaaatacgtttactaaacccatgaggtcttatgtccgaactctctcatctgtttcatcattcatttgtctttatgtcagtaccaaactgttttgattactataccttatatagtatgttttgaaattagaaagtatgatgcctctatctttatatttttttcccaatattatttggctgtttgcaatcacttgaaattccataaaaattatagaatattttaaaacttctgcaaaaagtttcattgatattttgatagaaagtatattgaatcagctaggggtggtggctcatgcctgtaatcccagcactttgggaggctgaggaaggtggatcacctgaggtcaggagttgcgagaccagccatggagaaaccccatctctactaaaaatagaaaattagccaggtttggtggcacttgcctgtaatcccagctactcaggaggctgaggcaggagaatggcttgaacccaggaggtggaggttgcagtgaactgagatcacaccattgcactccaccttgggcaacaagagcaaaaacccatctcaagataaaaagaaagaaaagaaaagaaagagcattgaatcagtaaaccactttcggtagtagtgacatgttaaa a score=51715.0 s hg17.chr17_random 2256719 503 + 2618010 aatattaag----tctATAACCTCTT-GAACAAGAGTGTgtttgagaatttgttgtttaatttttacttattctttgacatgctagtgttt--------ttaacttcttgttttattgtatcatagttaggaataatttgtg---taattcca-tctgctgaaatttgctaag-atgtgttttttaacttaacaggtggtctatctggaatattgtggcatgtgtgattaaaagtattgcatattc---tactgttgagtggagagatataaatgtgactgttaggtctaattgttctattgtgttgttgaaatcctctgtttacttattcatcttatgtttgttttttaattta--cattactaaaagtatgataaaaaagtcatctactgttat----gtgctggctacttcatgtttcaattctgtaaaatgttgcttcatat-tttgggaactgtgatgtaaggcacatacattactgttgc--ttttattgttgcatgttgtttta---ttgttgcttttattgatgtatg s panTro1.chrUn_random 177541682 514 - 240967748 aatattaag----tctATAAcctcttcgaacaagagtgtgtttgagaatttgttgtttaatttttacttattctttgacatgctagtgttt--------ttaacttcttgttttattgtatcatagttagcaataattt-tg---taattccattctgcttaaatttgctaagaattcgttttttaacttaacaggtggtctatctggaatattgtggcatgtgtgattgaaagtattgcagagtc---tactgttgagtggagagatataaatgtgactgttaggtctaattgttctatcgtgttgttgaagtcctctgtttacttatccatcttatgtttgttttttaattta--cattactaaaagtcagatataaaagtcatttactgttatca-ggtgctggctacttcatgtttcaattctgtaaaatgttgcttcatatgtttgggaactgtgatgtaaggcacatgcgttactgttgttgttttattgttgtatgttgttttaatgttgttgcttttattgttgtatg s canFam1.chr25 11551683 495 + 54436876 aattttaagttcctctctgactcctt--------aat-tattcagaaacatgcgatttaatctccacatacatttgaattttccagttttccacctgtgttgatttctacttccatactattgtgatcagaaaagattattgaaatgattataatgttctttaatttgttaac-acttgttttgtggtgtaatatatgatctatcccagaggatgttccatatgcttttgaaaataatgtgtattctgttgctattgcatagaatattctgtacttatctgtttggtccatatggcctaacacatgatttaagtccaatattttcttattgacttactgtctg---gataatctatccattgatgaaagtggggtattagagttccctactattattgtattgctgtctatttctccctttagttctgtcaatatttattttatatacttaggtgccccactgttggatgcataaat-----------attta----caaatgttatgttc---tt----------ttgatatacg a score=-954.0 s hg17.chr17_random 2257222 39 + 2618010 ttgtttt----ttgttgcttttattgttgttgttttTATTGTC s panTro1.chrUn_random 177542196 43 - 240967748 ttgctttattgttgttgcttttattgttgttgtttttatagtc s mm5.chr17 73916046 43 + 93559791 TTCTTTCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTC s canFam1.chr25 11552178 7 + 54436876 ------------------------------------taatgaa a score=-2167.0 s hg17.chr17_random 2257261 112 + 2618010 CTTTTCTTCTTCTCTCTTGAGG-----AAG--TTTTTGATATAAT-ATATATTTTGT------CTACCATGACAGTATTTGATTTTGCA---------TTTAA----TTTTTTTTATTCTTTCATGTATGGCTTATGCg s panTro1.chrUn_random 177542239 115 - 240967748 cttttcctctTGTCTCTTGAGG-----AAG--TTTTTGATATAAT-ATGTATTTTGT------CTACCATGACAGTATTTGATTTTGCA---------TTTAATAT-TTTTTATTATTCTTTCATGTACAGGTTATATG s mm5.chr17 73916089 104 + 93559791 TTTCTTCCTTCCTTTCTTTA-------CAG--TTTTTGACTTGAC-ATCTCCTTTAT------TTGATATAAAATTAGCTAATGTAGC-------------------TACCTCTGCTCTCTTCACTTACCATGCATATG s canFam1.chr25 11552185 58 + 54436876 ctt-----------------------------tttttaatataatgaccttctatgt------ctttggagaatttagtccattt-aca---------tttaa------------------------------------ s danRer1.chrNA 106813204 137 + 390413307 TTTTTATTTTGTCCTATTTATGCCTTAAAGCTTTTTTGACCCT-C-ATTTTTTCCATTGCTTCCTTACATGTGTTTAGTTGATTTTGTAGTGACATGTTTGGATACATTTCTCCTTTCCTTTTGTGTATATTCTATACT a score=-6319.0 s hg17.chr17_random 2257373 184 + 2618010 tg------------ttccagatcat---aatgtggt------catttgtaggaagcagagagttgaatctt--gtttcatgaatttatttagtgaaagtatgtttttgattgacataatttatatatatataaaatcattactaaaagggaataatttccta---tgactttctattgaattttgtttcttttttgttttaggtcctgta s panTro1.chrUn_random 177542354 172 - 240967748 TG------------TTCCAGATCAT---AATTTGGT------TATttgtaggaagcagagagttgaatctt--gtttcatgaatttatttagtgaaagtatgtttttgattgacataattaatttatat-taaaa-aattactaaaagggaatgatttc-------------gtattgtattttgtttcttttttgttttaggtcctgta s mm5.chr17 73916193 204 + 93559791 GACTTCCCCTTTACTTTCAGAGTGTGTGAAGCTGGCACAAGACCCTTGTAAATGATACATAGTGAGCTCTTTGGTTTT---TATTCATGTGGCCACTTTATGTCTT---TTGACTTAATCCATTTACTTAACAAGTAACTATTGATAGGCAAGAACTTTATAGTGTAACTTTTAGTTGCTTTCTATTCTTTTGTGTATATGCGACATATG s canFam1.chr25 11552243 48 + 54436876 -----------------------gt---aat-----------tatttata-----------------------gt-----------------------------------------------------tatggaatcactatt----------------------------tctactgga----actcttcta----------------- a score=-827.0 s hg17.chr17_random 2257557 3 + 2618010 gc---------------t s panTro1.chrUn_random 177542526 18 - 240967748 gctttttttttttttttt s canFam1.chr25 11552291 3 + 54436876 gc---------------t a score=21434.0 s hg17.chr17_random 2257560 304 + 2618010 ttttctgttgagacggagttttgctctgttgcccaggctggagtgcagtggtgcaatcttggctccctgcaagctccgcctcccggattcacgccatactcctgcctcagattccccagcagctgggaattcaggcacccgccaccatgcccggctatttttatttttatttgtttattttttttagtagagacagggtttcactgtgttagccaggatggtctcaatctcctgacctcgttgatccacccacctcggcctcccaaattgctaggattacaggcgtgagccaccgctcctggcc s panTro1.chrUn_random 177542544 296 - 240967748 tttttttttgagatggagtgtctctctgtcgcccaggttggagtgcagtggtgagatcttggctcaatgtaagctctgcctcccgggttcatgccattctcctgtctcagattccccagcagctgggattgcaggagcctgccaccacgcccggctatttt--------ttttttttttttttttggtagagacgtggtttcaccgttttatccaggatgggcttgatctcctgaccttgttgatccacccacctcagcctcccaaattgctaggattacaagcgtgagccaccgcccctggcc a score=15512.0 s hg17.chr17_random 2257864 139 + 2618010 ggtcctgtagctattat--ttcctgtttttctctcttgttctctttcttagcgtattattga-tctttatagtgacatgttttaattcttttctcactactctctctgtgt-----gtatGTCTTTGTGTGTGTGTACTAT-AGGTAt s panTro1.chrUn_random 177542840 140 - 240967748 ggtcttgtagctatt-tcgttcttatttttctctcttgttctctttcttagtgtactattga-tttttgtagtgacatgttttaattcctttctcactactctctgtgtgt-----gtatGTCTTTGTGTGTGTGTACTAT-AGGTAC s canFam1.chr25 11552294 146 + 54436876 -gttttgtaattcat-ttatccccttcttcctctcgtgttctattcttttgtggtttggtgattctctatattggtaggcatagattactttctttttatctcttgtatatctacagtaggtttttgtttttgattcttatgaggttt a score=20542.0 s hg17.chr17_random 2258003 253 + 2618010 ttcctttttttttttttttttgaca-gggttttgctctgtcacccaggctggagggcagtggcacaatctctgcttattgcaagctctgcctctcaggctcaactcaaacaatcctcccaccacagccttctgagtacctgggaccacagatgtgcaccagtactcctggctaatttttgttatttttcatagagacagggttttgccatgttgcccagactagtctcaaaatcctAAGTACTATAGGTATTTT s panTro1.chrUn_random 177542980 251 - 240967748 TTCC--TCtttttttttttttgacaggggtcttgctctgtcacccaggctggagtgcagtggcacaatctctgcttact-caagctctgcctctcaggctcaactcaaacaatcctcccaccacagccttctgagtacctgggaccacagatgtgcaccactactcctggctaacagttgttattttgcatagagacagggttttgccatgttgcccagactagtctcaaaatcctAAGAACTGTAGGTATTTT a score=2528.0 s hg17.chr17_random 2258256 12 + 2618010 CTTTGTTGTTAC s panTro1.chrUn_random 177543231 12 - 240967748 CTTTGTTGTTAC s mm5.chr17 73916827 12 + 93559791 CTTTGTAGTTTC a score=-223.0 s hg17.chr17_random 2258268 69 + 2618010 TA--TAGATATTACCAAAAATAACTACTAT---------AGCATAT-------AAAACCCTGCCTCTTTATGGCTGCC------TATGTGTTT s panTro1.chrUn_random 177543243 69 - 240967748 TA--TAGATATTACCAAGAAAAACTACTAT---------TGCATAT-------AAAACCCTGCCTCTTTATGGCTCCC------TATGTGTTT s mm5.chr17 73916839 77 + 93559791 CACCCAAAGATTACATAAAACATCTGATATTTTTAGCAATGTATTTTAAGCTGAGAACAACAACTTTTTGTTGTTG----------------T s danRer1.chrNA 106813401 68 + 390413307 --GATTGATATTAACT----TAACTTTAAT---------AGCATAC------AAAAACTACTCCTTTGTATTTCTACCCCACCTTATAT---- a score=33122.0 s hg17.chr17_random 2258337 140 + 2618010 TATTGATGTCGCGAATTACATCATTTTGTATTGTGAATCTATTGGC------ACAGTTATATAGTCATTTTTAAGTCTTTGTTATCTCAACTACATAGCAGAATTAAAAGTAT-TCTGTGCATCTTCATTATAATAACAAAGAATAT s panTro1.chrUn_random 177543312 139 - 240967748 TATTGATGTCACAAATTATATCATTTTGTGTTGTGAATCTATTGGC------ACAGATTTATAGTCATTTTTAAGTCTTTGTTATCTCAAATATATAGCAGAATT-AAAGCAT-TCTGTGCATCTTCATTATAATTACAAAGAATAT s mm5.chr17 73916916 142 + 93559791 TACTGATGTCACAATTTACATCATTCTGTATTGTGTATCTATTAACAAGTTAACATATCTACAGCTAATAATATAT-TTTGCGGTC-CATTTGCACACAATAGTTAAAAGTGG-CCGGGCCATCACCATTATGGTATT--AGAATAT s canFam1.chr25 11552722 138 + 54436876 TTTTGATGTTTCAATTTACATATTTTTATATTGTTTATCCATTAAC------TGATTATTATAGTTATTTATAATTCTTTTGCCTTTAACCTTTATACTAGAGTTGTaagtga-tttacctactaccattacaatatt--agaatat s danRer1.chrNA 106813469 139 + 390413307 TATTGATGTAACAAATGACATCTTTATATATTATGTACCCATTTGC------ATAGATTTATCATCATTTTCATGGATTTACCTTTTAAATCCAGTA--AAAAATAAAAGTGGAATTATAAACCAAAAGTACAAAAATGCTGGGTTT a score=7196.0 s hg17.chr17_random 2258477 95 + 2618010 TAT-AATTGTG--TACATAATTATC--TGTTAGAAAACTTTA-TATTTTACATAATTCTGTGTTGCTCTCATCATTATTTTATT-TTTTAATGTCAATGAC------T s panTro1.chrUn_random 177543451 103 - 240967748 TATGGattgtg--tacataattttctttattagaaaacgtcattattttacataattttgtgttgctctcatcattatttcatt-ttttaatgtgaatgact--attt s canFam1.chr25 11552860 104 + 54436876 ttt-gattttaactatatatttacctttaccagtgagtattatacttttatgtattcttatccta--ctggttagaatcttttc-ttttatcttgaaaaactccattt s danRer1.chrNA 106813608 96 + 390413307 TAT-ATTTGAC--TATGTATTAGCCTTTACAGGGGACCTTCA-TATTTTACATGGCTTTGCATTA--TTGTCTAGCATTCTTTCATTTCAAATTGAAGGACT------ a score=22431.0 s hg17.chr17_random 2258572 244 + 2618010 agcattttt--ttatacaggcctactgtgcataaattaatacagtttttgttgatcttgaatattctttatttttattttttaattcatttgaaatgatagc---------tttggcaga-catagtgttcttggttggtacttgccatttttttcagcactttgagtatgtcatcctacaacc-tcttgcctgcatgcta------ttggctgagacatctgctggtcatcctataggggtaacattgtacatgctaagtca s panTro1.chrUn_random 177543554 245 - 240967748 agcattttt--taagacaggcctagtgggtataaatttatacagtttttgttgatcttgaatattctttatttttattttttaattcatttgaaatgatagt---------tttggcagagcatagtgttcttggctggtacttgcca-ttttttcagcactttgagtatgtcatcctacaacc-tcttacctg-----taagtttttttgctgagacatctgcttgtcatcctgcatgggtaaacttgtacatgctaagtca s canFam1.chr25 11552964 242 + 54436876 aacatttcttgtaagaccagtctagtggtgatgaaatccttcagcttttgtttgtctggaaaactctatgcc----tccttcaattctgaaggacacatagaggatcctggtttgccagg-tagagaatac-tggtttgcagttttt--ttctttcagtactttgaatatatcatgatactcccttccagcctgcaacatt------tcttctgaaaaatctgatag------taca-agtttattttttatgtaccaggttg a score=56427.0 s hg17.chr17_random 2258816 551 + 2618010 ttttttcttgctgacttcaagattctcggtgttttaacatttgaatct---ctgattaaaatgtgtcttgtcatgggtctccctg-----------tgttgctactagtt------ggtaaagtttcattaaattttaggccattttctccttcaaattttgag-agttctcagccactgttt--------gtttcttga--aataactttgctgctctcttttctctctttttattttagaattcccattagaagtatattggccatcttaatggtatcccataagtcccttaggctctcttaatttttaaaattatttttaccctcctcaccat--------ataatttcaaaagacttcttatgaagcttgctggat-tttttcctgctagatcaaaccagttgttggac-------------------------------cttctagtgaatctctaaattcaggtattttatttttcagctccacactttatgtttctattttgtacttttaatcacttcattgataatctcattatcttcatgaattgttttctttttctgtttagctttctatgt----tcttctttagctgaatgagcatctttaagctaggtgtttt s panTro1.chrUn_random 177544577 551 - 240967748 ttttttcttgctgacttcaagattctcggtgttttaacttttgaatct---ctgattataatgtgtcttgtcatgggtctccctg-----------tgttgttattagttagagttggtaaagtttcattatattttaggtcattttctccctcaaattctgag---ttctctgtcactgttt--------gtttcttga--aataactttgctgctctcttttctct--ttttattttagaattcccattatgagtatattggccatcttaatggtatcctgtaagtcccttaggctctcttaattttttaaattatttttagcctcctcaccct--------ataatttcaagtgacttcttatgaggcttgctgaat-tttttcctgctagatcaaacctgttgttggac-------------------------------cttctagtgaatctctaaactcaggtattttacttttcagctctacatgtt--gtttctattttgcacttttaatcacttctttgataatctcattatcttcatgcactgttttccttttctgtttagttttctatat----tcttctttagctgactgagcatctttaagctaggtgtttt s canFam1.chr25 11553207 561 + 54436876 ttctttctagcttctttaaagattatc----tcttaacctttaacttttgactaattataatgtgtgtctgtgtgggtctctttggtttatcctttttttagtactcttt------gg----gtttcctggatctggatgtctgtttctttcctcaggttagagaaattttcagatattattttttagatagtattttgattaataat-------atctcttttctac--ttctg----ggaccccctattacatgtatcttagtctgcttgatgg--tcccataagtcccttaagtggtcttcccgttttcattcttttttctcttttttcttctctggttggatgaattccaccaaccgatctttgaaattactaaatctttctttcatttgatctagtcagtttttgaactactctattggatttttctttcttttttttttttctattggatttttcaattcagtcattatattcttcaacacta----tt--gtttctatttgatactttaaa----------aata--------------------ttttttatgtttatgttgaaattctcatgcattgtcttcctgacctcagtgagaatctttatgactgttatttt a score=158780.0 s hg17.chr17_random 2259367 2004 + 2618010 agccaggcacaatgatatgtgtgtctaattccagctactttgaaagctaaggcaaggggattactgtattaataaattctcatgctgttaataaagacataaccaagactggataattcataatgaaaaaggtt--aatggcctcacagtttcacatggctggggaggtctcacaattattggagcaagcaagagactttgttcaggggaacctccacttataaaaccatcagatcacgtgagacttttttgctatcatgagaacagcatgggaaaatcccacccccatgattcaattacctcccacagggtccctcccaggacatgtggagattattacaattcaagatgagatttggttggggacagagagccaaaccatatcaattacttaaggctaggagtttgagaccaccctgggcaatattgtgagaagctatatgtaaaaaatatttttacagattaatcatgaatggtggaatgttcctgtagtctc-ggaagttggaggctgatgtaagattattccttgagttccc-aggaatttgacgctgcattgagttataaccatgatattgtattcctgtctgggtgagagagtaagaccGCCTTTTAGAAtttcaaatttgttttagatttaggaggtacctacacaggttttttacatgggtattttgtatagtgctgaggtttgaaatataagtaattccatcacttatgcagtgagcatagtactaaatagacagtttttcagttcttgatccctccctctctccaccctctaagagttgtcttttatttttatttttatgtccatgtgtacccagtgttaatttccatttataagtgagaacat-cagtatttttgttttccatttctgcattaatttgatt-gtagaatgacctttagttgtattaatgttgctgcaaaggacaagtttttttgttgttgttgttgtttttgctaagtagtattgctgtacatgtgacactttttaaattcaatttagcattaataggctggacacggtggctgatgcctgtaatcccagcactgtgggaggccaaggtgagtggatcatgaggtcaggagatcgagaccatcctggacagcataatgaaacccccgtctctactgaaaatacaaaagttagccggacgtgttgtcatgagcctgtagtcccagctactcgggtggctgaggcaggagaattgcttgaacctgggaggtggaggttgtagtgagctgagatagtgccactgcactccagcctgggcaacagagtgagacttcatctcaaaaaaaaaaaaa--taccattaatagtcacgtaggttgattcatgtctttcctgttataaataatgcagtgatgaaccaacaagtgcatgtgctgttttggtagaatagtttattctcttctgggtatacacccagcggtgaaatt-ctgcgttgaatcatagttcaactctcagttattt-ggaaaatctccaagctgctctccacagtggctgaactaatttatattcctataaacagtgtataagtggttttttccctctaaaaccccaccaa-tatctactatcattttactttttaacaaaagccattctaactggtgtacgatggtgtcttactgt--ggtttttatttacatttccttgatgg--ttagtgat---aagcttttttcatgttgtttggccacttgtatgtattcttttgaac-attgtctgttattgcccactttttcatggggtaattttttgcttgtgaattctttaagtttcttatagattctgagtattagattttgtcaggtttataggttgtgaatatttttgccattctgccagctttggggttagtttgtttttgtttttctagtttctctaagtgtgatgttaaattgttagtttgagatcattctaacttcttgatgcaggtatttagcactctcaactttcctcttaacagagcttttcctacaacccagacattttagtatattgtgtctcttc s panTro1.chrUn_random 177545128 2012 - 240967748 agccaggcacagtgacatgtgcatgtaactccagctactttgaaagctaaggcaagaggactactgtattaatccattatcatgctgataataaggacataaacaagactatgtaatttatcatgaaaaaagttttaatggcctcacagtttcacatggttagggaggtctcaccattattggaacaagcaagagactttgttcaggggaacctccacttataaaaccatcagatcacatgagacttatttgttatcatgagaacagcacgggaaaatcccacccgcatgattcaattacctcccacagggtccctcccaggacatatggggattattaccatttaagatgagatttgattggggacacagagccaaaccctatcaattacttaaagccaggagtttgagactcccctgggcaatattgtgagaagctattggtaaaaaatattttcacagattagtcaggcattgtggaatgttcctgtagtctcaggaagttggaggctgatgtaagattattccttgtgttccccaggaacttgaggctgcattgagctataatcatggtattgtgttcctgtctgggtgagagagtaagaccTCTTTTTAGAAtttcaaatttattttagatttaggaggtacctacacaggttttttacatgggtattttgtataatcctgaggtttgaagtatgagtaattccatcactcaagtagtgagcatagtactaagtagacagtttttcagttcttggtccctccctctctccaccctctaagagttgtctattatttttgtttttctgtccatgtgtacccagtgttaatttccatttataagtgagaatatgcagtattttcattttccatttctgcattaatttgctttgtataatggcctttagttgtgttaacgttgc-gcaaagga--ggttttttt-----tgtt--tgtttttgctaagtagtattgctgtacatgtgacactttttaaattcaatttaccatcaataggctggacacggtggctgatgcctgtaatcccagtgctgtgggaggccaaggcgggtggatcatgaggtcaggagatcgagaccatcctggacaacgtaatgaaacccc-gtctctactggaaatacaaaagttagccaggcttgttgacatgcgcctgtagtcccagctactcgggtggctgaggcaggagaattgcttgaacctgggaggtggaggttgtagtgagctgagatagtgccactgcactccagcctgggcaacagagtgacacgtcatctcaaaaaaataaaaaattacctttaataggcacgtaggttgattcacgtccttcctcttatgaatcgtgtagtgatgaaccaacaagggcatgtgctattttggtagaatagtttattctcttttgggtatatacccagcggtgaaattgctgggttgaatcacagtttaactctcagttattttggaaaatctccaagctgctctccacagtggctgaactaatttacattcctattaacagtgtataagtggttttttccctctaaaacctcatcaaacatctattatcattttactttttaacaaaagccattctaactggtgtacgatggtgtcttattgtccggtttttatttacatttccttgatggggttagtgatgataagcttttttcatgttatttggccacttgtatgtgttcttttgaaccagtgtctgttattgcccactttttcatggggtaattttttccttgtgaattctttaagtttcttatatattctgagtattagattttgtcaggttcataggttatgaatatttttcccattctgctagctttggggtaagttagtttttatttttctagtttctctaagtgtgaagttaaattgttagtttgagatcattctaacttcttgatgcaggtatttagcactctcaactttcctcttaacagagctcttcctacaacccagacattttgttatattgtgtctcttc a score=78708.0 s hg17.chr17_random 2261374 1030 + 2618010 tatttcaaattttttttaagtttctgcctcaattttgttgtttacccaaaattcattcaggagcaagttgtttaatttcaatgccattctgtgattttgtgagattttgttggtattgatatttatcttttttccattgtggcctgacagtatggttggcataatttt----catttttaaaaaatgtatggataattgctttatggctaggaagtggtcaatcctagagtatattctgtgagcga-tgagaagaatttatgttccttagatgatgtgtggtgtatactataaatgtctattagtttcaattgatcaagtgcgaaatcaaactccagaatttctttgttaagtttctgcctagataatctgacaaacactgttattggggagttgcgtttccctactattattgcgtggctacttgagtcttattgtaggtctagcagtacttgttgtataactctatgttccccaaagttgggtgcatctatatttaggatagttaagtcttcttgttgaattgaactctctatcgttatgcaatgcctttctttgttttattttactattaatgatt--taaagtcctttttTCTTAAAAGAGAAACAATTccaggtatggtggctcatgccagcactttcagactgaggcagtaggattgcctgagaccaggagtttgagaccagccgaggcaacataacaacattctgtttgtacagattctt-ttaaagaaactatacaggtgtggtagtgtgcccaactgtggtcatatttactcaggagacataggaggcatgactgctttacttcagaaatttgaggttacagtgagctgtgattgcaccactgccatctgtcccaggagatagagtaagatcctgtgtataaaatgaaaaaa-taaagaaaaaTAAAATGATTTTAAGTTAAAAAA-Taattcatagatctccacttctttagggtcacttgaatatatattttt-------------ctcgtttcattaggctatatttcctggttgcttttaaGTACTGTGGTTTTGTTAAG s panTro1.chrUn_random 177558225 1038 - 240967748 tatttcaaaatctttttaattttctactttaatttttttctttacccaaaattcattcaggagcaagttgtttaatttcaatatgattctgtgattttgtgagattttcttggtattcatttttatctttgttccattgtggcctgacagtatggttggcataattttgttttttttttaaa---tgtattgagaattgctttatggctagtaagtggtcaatcctagactatattttgtgagcaaatgagaagaatttac-ttccttagatgatgggtggtgtatactataaatgtctattagtttcaattgatcaagtgtcaaatcaaattccagaatttctttgttaagtttctgcctggataatctgtcaaacactgttagtgaggagttgcattcccctactattattgtgtgtctgcttgagtcttattgtaggtctagcagtacttgttttataactctatgttccccaaagttgggtgcatctacatttaggatagttaagtctttttgatgaattgaaccctttatcgttatgcaataactttctttgttttattttactattaatgattcttatagtcttttttTCTTAAAAGAGAAACAATTccaggtatggtggcttatgccagcactttcagactgatgcagtaggattgcctgagaccaggagtttgagaccagccagggcaacataacaacattctgtttgtacaaatttttcttaaagaaactatacagctgtggtagtgtgcccaacagtggtcatatttactcaggagacataggtggcatgactgctcgacttcagaaatttgaggttacagtgagctgtgattgcaccactgcactctgtcccaggagatagagtaagatcctgtgtacaaaataaaaaaaataaagaaAAATAAAATGATTTTAAGTTAAAAAAATAATTCTTAGATCTCCACTTCTT-----------GAATATATATTTTTAAGATATATTTTTCTCATTTGATTACGCTATATTTCCTGGTTGCTTTTACATACTGTGGTTTTGTTAAG a score=54799.0 s hg17.chr17_random 2262404 717 + 2618010 GTTTTGGTCAATTAAGAAACCACTACCTATTTTATCCTTTATGAAAAAGCTTTGTACATGGGAAAATTGACAATATTCAGCCACACTAGTCATTCCGGGAGCTTCTCCAATCTGTTGTCAAAATGTGTCTTCTTTG---TACTGTATGTATTTTCTTGTTAATAAGGTTTACCTCTCTTTCCTCTTAGGAGCCTTTA-GTCTCTTCTCTTTGTCACTGTTGCAGGCACTACAGTCTCT-TTGTTGT---AAGAAATATTTATCTTTATTCTCAGTCGACCCAAGCTGTCATTTAAACTCTATCTCTATTCT---------GGTCAACACTAAATGTTAAAGG------------------------------TATAAAT-CAATAAGTCAGAAGTTTGCATACACGTTTCACTC-TGTTTTCTTTCCCGAGGGAGAATCATGGAATGGACAGAATTTT----ATCTAACTGCACTGTTCT------GTAGTGCAGAAATGTAACCAAATTTTCTTTCTTC-TAAATGTGGTTATGGTTGGCTTT-TTTCTCATGAGGGGTGCTACAAACT--CAACTGG-CTTT---GCTCACCCAATTGCAGT----TAAGTTCATACATCCATTGAGAGAAACAGGATCTCAGG-----TTCTTCTTCAACTATCATTGTGTTCTCAGCTGGCC--TCATTTTGTTCATTAGATTTATAAAATATATTTACCTTAATTTCATCACCGaattttttaaaaaattattattttCCAGCT----TTTAGCATTATATCCAAC-AAGACCTA s panTro1.chrUn_random 177559263 764 - 240967748 GTTTTGGTCAATTAAGAAATCACTGCCTATTTTATCCTTTATGAAATAGCTTTATATATGGGAAAATTGACAACATTCAGCCACACTAGTCATTCCGGGAGCTTCTCCAATCTGTTGTGAAAATGTGTCTTCTTTGGACTACTGTATGTATTTTCTTGTTAATAAGGTTTACCTCTGTTTCCTCTTAGGAGCCATTA-GTATCTTCCCTTCATCACTGTTATAGGCACAACAGTCTCTGTTGTTGT---AGGAAGCATTTATCTTTATTCTGATATGACCCAAGTTGTCATTTAAACTCTCTCTCTTTTCTTTAACATTTAGTCAATACTAAATGTTAAAGGAAGCAATTTCCAGTCTTTGGATAACCCTGGTACAACT-CAGTAAGTCAGAAGTTTGCATACACATTTCACCC-TTTTTTCTTTTCCGAGGGAGAATCATGGAATGGACAGATTTTT----ATCTAACTGCTCTGTTCT------GTAGTGCACAAATGTAACCAAATTTTCTTTCTTC-TAAGTGTGGTTATGGTTGGCTTT-TTTCTCATGTGGGGTGCTAGAAACT--CAACTGGACTTT---GTTCACCCAATTGTAGT----TAAGTTCATATGTCAGTTGAGAGAAACAGGATCTCAGG-----TCCTGCTTCAACTGTCATTGTGTTCTCAGCTGGCC--TAATTTTGTACATTAGATATATATAATATATTTACTTTAATCTCATAACCGaattttttaaaaaattattatttttCAGCTCT--TTTAGCATTATATCCAACCAAGACCCA s canFam1.chrUn 10815918 716 + 91062872 TATTTGGGAATATAAAAACCAGCCCCAGGTCCCAGGCTTTCTGAATTTGCTTTGTATAGAAGAA----GACAA-AGTCAGTTGTGCTAGTAAATTCTGAATCCTATTCAACATATTCTGAGGGCGTATAAAGTCTGAGATTTTGTA---ATTTCCCAATTAAGGAAATGTTTGTTGGTTCCTATTTAGAATATGTTACATTTCTCTCCCTGATGTTTGATTTTAGCTCTGCCATCTCT-CTGGTGTTTGCAGAAATACTTA------------------ATATGCTGCCATT----CCCTCTGCCCTTGCT----------------GTCATGTGTGACAGA----------------ATCAAGTCCCCTCAGGCAGCTGCAATGAAGTAGATCACGGCCCACACAGGTCACTCATGTCTTCTTTCCTGAG---------CAGAGTTGAGAGTTTTCTCACAATCTTGCCATGCAGTGCCAGGTGAGTGGTGAGCAAGCATAAAAACCTTTTTGTCCCTCTTTCATATGGTTCTTCTTCATTTTGTGTTTCCTTGGGGGTACTGTGTTCTCCCAGCTGGATTCTGGAGCACTCCAAAAGGCAGTCTCATCAGTTTGTTTCTCCAT--GGAGGAGCAAAGTCTTGGTGCTTCTTATTCCTCTAATCTGCTCATGTCCTGTGATGGGCATCAATTTTTTACATTAGCACCTTATAGTATATGCACATAAGTATAGTAAGCGG-------AATAATCTAATCTCTTTCAGTTATGCCTTTTCATCACACTTTGT---GCTATG a score=38252.0 s hg17.chr17_random 2263121 322 + 2618010 GACAAAACAGTACATAGGAGCTTCTTTTCAAAAAGTA----ATATTGGGAAGATATGGGAGCTCTGGCCTTGAAAATTTACACTTAAGGAGAGTGGGAAATTGAAGGATAAGTGTAAAGGGT-ACAAAGGATGC------TATGATGAAT--------ATACCAGATATAGAGCAACT-------ACCTACAGCAAAAATGTCACTGCTAGAAGAGCTCAAAACCATAAAGTATTT--TGGAAAAAGCATAATTAATGTTGATTCTTTT---------TTCTGAACTATATATTTGTATAATTACATATCAATAACAATTTTTG----------AAAC--ATCATGTTTTTGAA-----ACAAAATTTAGAAAATC s panTro1.chrUn_random 177560027 324 - 240967748 GAGAAAACAGTACATAGAAGCTTCTTTTCACAAAGTA----ATATTGGGAAGATATGGGAGCCCTGGCCTTGAAAATTTACACTTAAAAAGAGTGGGAAATTGAAGGATAAGTGTAAAGGGT-ACAAAGGATGC------TATGATGAAT--------ATATCAGATACACAGCAACT-------ACCTACAGCAAAAATGTCACTGCTAGAAGAGCTCAAAACCATAAAGTATTT--TGGAAAAATCATAATTAATGTTGATTCTTTT---------TTCTGAACCATATAGTTACATAATTACATATCAATAATGATTTTTG----------AAACATATCATGTTTTTGAA-----ACAAAATTTAGAAAATC s canFam1.chrUn 10816634 326 + 91062872 GACAAAGACAGACA---AAGATTCTTTCCATGGGGTGGGTTATATTGGGACGATATGGAAACTGTGGCCATGAGAATTGAGTTAGTGAAAGACTGGGAAGATGAGGGGGGAGTGGGAAGAGC-AGAAGGAATAT------TATGATGGAT--------AGAACGAAACTGGAGTACTT-------ACCCATAATGAAATCCTTACTGCCAGGAGAGATCAAGGATCTAAAACATTTGGGGGAAAAATCTTACTTTATGACAGCTATGTT---------TGCAGAACAATGTCTTTATG-AATGCCAGGACCCAAACCACGTTTT----------AAACATACGTATGCTCCAAA-----ACAAAATTTGGTAAACC s danRer1.chrNA 150746068 345 - 390413307 GAAAAATCGCAAAATATGACATTTTTTTGA-----------AAAATCGCAAAATATGAAA----TGTTTTTGAAAAATCGC------AAAATATGAACAATTTTTGAAAAATCGCAAAAAATCACAAAAAATGAAAATTGTTTGAAAAATCGCAAAAAATCACAAAAAATGAAAACTTTTTAAAAAATCACAA-AAAATTTACATTTTTTGAAAAATCGCAAAACATGAAATTTTT--TGGAAAAATCGCAAAATATGATAATTTTTTTGAAAAATCGCAAAAAATGACATTTTTGAAAAATCGCAAAATATGAAATTTTTTTGAAAAATCGCAAAACATGAAATTTTTTTGAAAAATCACAAAACATG------- a score=690.0 s hg17.chr17_random 2263443 24 + 2618010 GCAATAGTGGCCTAGGCCAGGAAt s panTro1.chrUn_random 177560351 24 - 240967748 TAAATAGTGGCCTAGGCtaggaat s danRer1.chrNA 150746413 23 - 390413307 AAAATTTTGGGAAAAATCGCAAA- a score=231042.0 s hg17.chr17_random 2263467 3045 + 2618010 atatcttctaatgctatccctcccatagtcccccacttcctgacaggctccagtgtgtggtgttccccttcctgtgtccctgtgttctctttgtttaactcccaactatgagagagaacatgtgatgtttgcttttctactcttgtgttagtttgctgagaatggtggtttccagcttcatccatgtccctgcaaaggacatgaactcatcctttttatgactgcattgtattccatgatgtatacatgccacattttctttattcattctaccactgatgggcatttggtttggttcaaagtttttgctcttgtgcacagtgccataataaacatatgtttgcatgtgtctaagtagtagaataatttataatcatttggttatatacccagtaatgggattgctggatcaaatggtatttctcattgtagatccttgaggaattgccatactgtcttccacaatggttgaactaatttacactctcaccaacagtgtaaaagtgttcctatttctccacatcctctccagcatctgttgtttcctga-tttttccaatgatcaccattctaactggagtgagatggtttctcactgtgtttttgatttgcatttatctaatgaccagtgatgatgagtttttttt-tcatatgtttgttggctgcataaatgtcttcttttcagaagtgtctgttcatgtcctttgcccatttttgatatggttgtttgtttttttcttgtaaatttg-cttaagttttttgtagattctgcatattagcccattgtcagatggatagattgcataaattttctcct-ttctgtgggttgcctgttcactctgatgatagtttcttttgttgtgaagaagctctttactttaattacatctcgtttgtcaattttggcttttgttgccattgtttttgctgttttagtcatgaagtc-tttgcccacgcctatgtcctgaatggtaatgcctttgtttt-ttggggggtttttatggttttaagtcttacatttaagtctttaatccatcttcagttaatttttgtataactagtaaggaagacgtccagtttcatttttttgcatatggctatctagttttcccaacaccatttattaaataaggaatcctttccccattacttgtttttgtcaggttcatcaaagatcagatggttgtagatgtttgatgttatttctggggcctctgttctgttccatttgtcaatatatctgttttggtaccagtaccatactgtcttggttactgtggccttttagtatagtttgaagatagctagtgtgatgcctccact-tttgttctttttgcttaggattgtcttgtctatgcaggatcttttttgattccatatg-aaatttaaagtagtttttttttctaattatgtaaagaaagtcaatggga-gcttgatggggataacactgaatttataaattactttgggcagtatggccattttcacaatattgattcttcctatccatgagcacggattgtttttcatttgtttgtgtcctctcttatttccttgagcagtggtttgtagatctccttgaagaagtccttcccatccctt-ttaagttggattcctaggtattttattctctttgtaa-caattgtgaatgagagttcatgcatgatttggctctctgtttgtctattattgtg-tataggaattcttgtgatttttgaacactgattttgtatactgagacttttttgaagttgcatattggtttaaggagattttgggctgagacg-atggggttttctaaatatacaatcatgtcagctgcaaacagagacaacttgagttcctct---tcctatttgattacgctttgtttctttctcttgactgattgccctggccagaacttccaatactatattgaataggagt-gatgagagagggtattcttgttttgtgcagattttcaaaaggaatgtttcaagttttttcccattcagt---atattggctgtgcgtttgtcataaatagctcttaatatgttgagataagttccatcaatacataattcattgagagtttttaccatgaagaggtgttgaattttgctgaaggccttttttgcatctattgagataatcatgtggtttttgtcattagttctgtttatgtgatggaatacatttattgatttgcatatgttgaacaagctttgcatccgagggattaagctgactagatcgtggtggataagctttttgatgtgctgctggattcggtttgccagtattttattgaggattttcgcatcgatattcatcagggatacgggcctgaaattttctt-tttctggtgtgtctttgccaagttttggtttcaggatgatgctggatgcataaaatgagttaaggaggagtac-ctcttttctattgtttgaaatagtttcagaaggaatggtaccagctcctctttgtacctttggtagaattcggctgtgaatccttctggttctggacttcttttggttggtaggctattagttactgcctcaattttagaacttgttattggcatattcaggcattcgacttcttactggtttggacttgggagggtatatgtgtccaggaatttatccatttcgtctagattttctagttaatttgcaaagagttttttataatattctctaatggtaatttttatttctgt-ggatcaatggttatatcccctttatcatttcctattgcatgtatttgattcttctcttcttccttattactctggctagcagtttattta-tttcttgat-cttttcaaaaaaacagctcctggattcgttgattttttggacgggctttttgtgtgtctatctccttcagttctgctgtgatcttaattatttcttgtcttctgctagcttttgaatttgtttgctcttgcttccctag-atttttaattgtgatattatgatgccgattttagaccttttctgctttctcttgtgggcatttagtgccataaatttccctttgcacactactttagctgtatc s panTro1.chrUn_random 177560375 3036 - 240967748 atttcttctaattctatccctcccataggcccccacttcccgacagtctccagtgtgtgaagttccccttcctgtgcccatgtgctctctttgtttaactcccaattatgagtgagaacatgcgatgttcgcttttctactcttgtgttagtttactgagaatgatggcttccagcttcatccatgtccctgcaaaggacatgaactcatcctttttatgactgcatcatattccatgatgtgttcatgccacgttttctttattcagtctatcactgatgggcatttggtttggttcaaagtttttgctcttgtgaacagtgccctaataaacatatgtatgcatgtatctttataatagaataatttgtaatcctttggctatatacccagtaatgggatggctgggtcaagtggtatttctccttgtggatccttgaagaatcaccatactgtcttccacaatggttgaactaatttacactctcaccaacagtgtagaagtcttcctatttctcgacattctctccggcatctgttgtttcctgattttttttaatgatcaccattctaactggtgtgggatggtttctcattgtgtttttgatttgcatttatctaatgaccagtgatgat--gttctttttgtcatatgtttgttggctgtataaatgtcttcttttgagaaatgtctgttcaaatcctttgcccattttcggtgtggttgtttgtttttttcttgtaaatttgttttaagttctttgtagattctgcatattagcccattgtcagatggatagattgcagaaattttctcccattctgtaggttgcatgttcactctgat-atagtttcttttgttgtgcagaagctctttagtttaattatatctcatttgtcaattttggcttttgttgccattgtctttcgtggtttagttatgaagccttttccccatgtctatgtcctgaatggtactgccttggttttcttctggggtttttatggttctaagtcttatgtttaagtctttaatccatcttccgttatgttttgtataatgagtaaggaagaagtccagtttcagttttttgcatatggctagctagttttcccaacaccatttattaaatagggaatcctttccccattacttgtttttgtcaggttcatcaaagatcagatggttgtagaagtttagtgttatttctgaggcctctgttctgttccatttgtcaatatatctgtttcggtaccagtaccatcctgtcttggtttctgtggccttttagtatagtttgaagacaggtagcatgatgcctccactctttgttctttttgcttaggattgtcttgtctacgcaggatcattttggattccatatgaaaatttaaagta-tttttttttctaattctgtaaagaaagtcaatgggaggcttgatggggatagcactgaatttataaattactttggtcagtatggccatttccacaatattgaatcttcctatccatgagcacggattgttttccgtttgtttgtgtcctctttcatttccttgagcagtggtttgcagttctccttgaagagatcctttacttcccttgtgaagttggattc----------------ctttgtagtcaattgtgaatgagagttcacacatgatttgg----ctgtctgtctataattgcgctataggactgcttgtgatttttgaacattgattttgtatcctgaggctttgctgaagttgcttatcagtttaaggagattttgggctgagatgaatggggttttccagatatacaatcatgtcatctgcaaacagagacaatttgacttcctctctctcctatttgaatacgctttatttctttct-ttgccttatt------gccagaacttccaatactatattgaataggagtgggggagagagggtgttcttttcttgtgcaggttttcaaagggaatgcttccggtttttgcccattcactatgatattggctgtgcatttgtcataaataactcttattatgttgagattggttccatcaatacataattcactgagagtttttaccatgaagaggtgttgaattttactgaaggccttttatgcatctattgagataatcatgtgttttttgtcattagttcggtttatgtgatggattacatttattgatttgcataagttgaaccagctttgcatcccagagattaagctgactagatcgtggtggataagctttttgaagtgctgctggattcggtttgccagtattttattgaggattttcgcatcgatattcatcaggggtacgggcctgaaatttttttgttgttgttgtgcctttgccaggttttggtttcaggatgatgctggctccataaaatgagttagggaggagtacgcgtttttctattgtttgaaatagtttcagaaggaatggtaccagctcctctttgtacctttggtataattcaggtgtgaatccgtctggtcctcgacttcttttagttggtaggctattaattactgcctcaattttagaacttgttattggtctattcagggattcgtcttcttactggtttggacatgtgagggtatatgtgtccaggaatttatccattttgtctagattttctagttaatttgcaaagaggtatttataatattctctaatgatactttttatttctgtgggatcaatggttatatcccctttatcatttcctattgcatgtatttgattcttctcttcttccttattagtctggctagaagtttatttattttcttgatacttttcaaaaaatgagctcctggattcattgatttttttgatgggctttttgtgtctctatctccttcagttctgctctgattttaa----atcttgtcttctgctagcttttgaatttgtttgctcttgcttccctagtttttttaattgtgatgttacggtgtcgattttaaaccttttctggtttctcttgtgggcacttagtgctataaatttccctttgcacactactttagctgtgtc a score=33557.0 s hg17.chr17_random 2266512 470 + 2618010 ATATTTTAATTTTT-----AAGCCCTCAATCTTTCTTTTTC-----ATCATGACAGTCTTGACTGTTTT------------ATGTTTATGAAAACTGTAAAATTGTCTACACAGTTT-TTACAAAGACTTTACC-AAAAT----ATTTTATTGAGAATGTACAAACCTGTCAGTCAATTAGGGGAGAAGTTGC----------ATTGTAGTAATAAATAGCCACAAAACAAAA--CCCTGAAGGACATCCAAACCAGAATAAAACAAAACATTTTAACAAAGAGAAAAAGAACAATCTCGCAACAAATATGTGCAGTTT-----ATATCACAAAGATGTTCACATCTCCACTTTAAAGAGAGCTTTT--AGAAGTTGATTTAAAATATGGGAAAAGACATTATCCCACAC--CACAGAAAAAATAAA----TTTAAGCAGCTCTTAACACATGAACGTATTATCAAG---CTCAGATGGAATCAAAATT-AAATATTTGACAACAGATTCTACAGTTTGAGAGAAAT s panTro1.chrUn_random 177563411 473 - 240967748 GTATTTTACTTTTT-----AAGCCCTCAATCTTTATTTTTC-----ATCATGATAGTCTTGACTGTTTT------------ATGTTTATGTAA--TGTAAAATTGACTACACAGTTTGTCATAAAGATTTTACCAAAAAT----ACTTTATTGAGAATGTACAAACCTGTCAGTCAATTAGAGGAGAAGTTAC----------ATTGTAGTAATAAATAGCCACAAAGCAAAA--CCCCAAAAGACATCCAAACCGGAATAAAACAAAACATTTTAACAAAAACTAAAAGAACAAACTGACAACAAATATGTGCAGTTT-----ATATCACAAAGATGTTCACATCTCCACTCTAAAGAGAGCTTTT--AGAAGTTGATTTAAAATATGACAAAAGGCATTATCCCACACTTCACAGAAAAAATAAA----TTTAAGCAGCTGTTAACACATGAACATGTTATCAAG---CTCAGATAGAATCAAAATTAAAATATTTGACAAGAGATTCTACAGTTTGAGAGAAAT s danRer1.chrNA 150746436 468 - 390413307 ATATGATAATTTTTTGAAAAATCACAAAAAATGACATTTTTGAAAAATCGCAA-AATATGAACAATTTTGAAAAATCGCAAAAAATCACAAAAAATG-AAAATTGTTTGAAAAA----TCGCAAAAAA-TCACAAAAAATGAAAATTTTTTTAAAAAATCACAAAAAATTTA---CATTTTTTGAAAAATCGCAAAATATGAAATTTTTTTGAAAAATCACAAAAAATGAAAATTTTTTGAAAAATCGCAAAATCACAAAAACTGAAAAATTTTTGAAAAA----------------TCGCA--AAATATGAACAATTTTTGAAAAATCGCAAAA-------------------AATGAAAATTTTTTGAAAAATCG---CAAAATATGAAA------ATTTTTTGAAAA--ATCGCAAAAAATGAAATTTTTTTGAAAAATCACAAAAAATGAAAATTTTTTGAAAAATCGCAAAATCACAAAAAAAT-GAAAATTTTTTGAAAAATTGCAAAATATGAAAAAAAT a score=16490.0 s hg17.chr17_random 2266982 244 + 2618010 AGAAAAGTGTTTTTTTCTTTTCTCCAGGTCCACAAGTCTAGTTTCTTGGACTCTCTCACTATAATGGAGGTTGTCATCAGCTCCCCAAAATAAGGGAAGCACAGAGCAGATGGTGGCTGAAGGTGGGGAATCCTGTGAAATCATATTTAAGATCATAGCC-CGTGGTCCA-TTGTATTGTAATCAGCTGGCTCAGGAAAGAAGATCTGGATCTCCTGAGCT-CTACACCTACTGCAATGG-ATATGTC s panTro1.chrUn_random 177563884 245 - 240967748 AGAAAAGTGTTTTTTTCTTTTTCCCAGGCCCACAAGTCTAGTTTCCTGGGCTCCCTGACTATAATGGGGGTTTTCATCAGCTCCCCAAAATATGGGAAGCACAGAGCAGGTGGTGGCTGAAGGTGGGCTATCCTGTGAAACCATATTTAAGATCAGAGCCTCTTGGTCCATTTGTATTGTAATCAGCTGGCTCAGGA---AAGACCTGGCTCTCCAGAGCTCCTATACCTACTGTACTGGCTTATAAC a score=56413.0 s hg17.chr17_random 2267226 653 + 2618010 AGGAGTCCCGAGAACCTCTGGGGCCCAAACCCCTCCCACCAAAATATATCATCCAGTATTGA-GGACTCTGACACCAAATTCTcacagagcatatgcttatgcaattttacatttaatttctcattacattacaattgggaaaatgaggccccaaaagaggcagggactgatccagatctcaggaggtgggcaggctccagagcattagagagagctccagcttcctaggccttggctccatccCACCTATCAGGTTTGCTTTGGAAGTTAGAGCCTGTAG-------------------------CTTC---------------------------------------------------------------------------------ACATTCAGG---------------------------------------------------------GGCACAGAGAATGAGCAG------------------ATCCAGGGTTCTGT-TCACATGGGGACCTCTCCATGTC-----------------------------AATTTCAAGATGACAGGACTGGGGTTT----TGCATCCAGCTCTGAGGGCACCTGGAAGTAAAATGAGC---TATGCTCCACCTCAGCCTAATGTAGAGAATGCCTGCAGGAAAG---CCTGTTTTCTTCCTCATAAATAG-GGCTGTTTGAACTGGGTGACCTCGACGATTTCACAT-ACTCATAAGTGTCTTCCAGCCCTG-ATTC---------------TTG--CTCTGAGACTGTGCAGAAATGCATCCACTCTCTGTAGGT-CCTTCAAATCAGAGGGA-------GGCATGGCCACTTCAGAGGCATCTTG-GGTAGATGAAGATGAGACGGAGCTA s panTro1.chrUn_random 177564129 656 - 240967748 AGGAGGCCTGAGAACCCCT-GGGCCCAAACCCACTCCACCCCAATATACCATCCAGTATTGA-GGACTCTGACACCAAATTCTCACAGAGCATATGCTTGTGCAGTTTTACATTTAATTTCTCATTACATTACAATTGGGAAACTGAGGCCACAAAAGAGGCAGGGACTGGTCCAGATCTCAGGAGGTGGATAGGCTCCAGAGCATCAGAGAGGGCTCCAGTTTCCTAGGCCTTGGCTCCATCCCACCTATCAGGTTTGTTTTGGAAATTAGAGTCTGTAG-------------------------CTAC---------------------------------------------------------------------------------ACTTTCAGG---------------------------------------------------------GGCACAGAGAATGAGCAG------------------ATCCAGGGTTCTGT-TCACATGGGAACCCCACCATGTC-----------------------------AGTTTCAAGATAACAGGACTGGGGTTC----TGCATCCAGCTCTGTAGGCACCTGGAAGTAAAATGAGC---TATGCTCCACCTCAGTCTAATGTAGACAGTGCCTACAGGAAAG---CCTGTTTTCTTCCTCATAAATAGCGGGTGCTTGAAGTGAGTGACCTCGATGATTTCACATGACTCATAAGTGTCTGCCAG-CCTGTGTTC---------------TTG--CACTGAGACTGTGCAAAAATGCATCCACTCTCTGCAGGTCCCTTCAAATCCGAGGGA-------GGCATGGACACTTCAGAGGCATCTTGAGGTAGATGAAGATGAGACAGAGCTA s canFam1.chr10 35386861 866 - 72717409 AGGAGACTTGTATACCTGTGCCTGCCAGAGGCCACCCAAACGAACACCCCATCCAGTGAGGATGGAGCCAGAGATCATATCCTC-CTGTGCACATACTTTCACAGTTCCACATCCCAACGCTCTTTA---TACATCTGGGAGTCAGAGGCCCTAAAAGAAGCAGGGA-TGGTCCAGGTCTCAGTACATAGGAAGATCCCAGAAGAAATGTGACTACTTTGGCTTCCTTAGAACAGAGTTCAACCCTCTCAGCACATTTACTTTGGAAACTAGAGTCCCTAAGATCCTTGTTATCCTTGCACAACCCCTTCCAATATGGGCCATTTTACTCACCTCATCCCCAGAAGTACATGGGCATACACAAATGGAAACAGACTTTTTCACAGTTGGAGACATTGAGGGATGGTTAAGGAGAGCAGAATCCCTGCAAGGGACAAAAAAAGAAGAAAGAAGTTGGAGGCACAGACAAGGGGCATCTATTCTCCTGGTGATACATCTAGAGGTCCACAGCATGAGAGGGACTCTCAAAGTCCCCATAGCCCTGCCTGGCCATATCCCAGTAGTCTCCAGAGGATAAGGCCAGGGCTCCTAATGTCGACAGCTCT--CGGCTCCTG-----AAACTGGGCACATATCCTTC----------AGTGTAGACAGGGGCTATAGGAAAGGACTCAGTTTCCTACACTACAAA-AT-GTGTACTTGATGTGTCTGACCACAAGGATTATGTCTGTTTGGAAAGTTTTT---AGACCTTAGTTCAGAACCAAAAGCTCATTGTTCTCTGAGAACATGGACAAATGCTTTC-CACTCCATGAGT-TTTTCAGAGAAAAGGGAACATTGGAGCTTGGCAAATGAGGAG----TTTG-----GGTGGAGAGGAGGCAGAGCCA a score=118559.0 s hg17.chr17_random 2267879 1120 + 2618010 AATGTTCCAGAGCACTGGACTCTGAGGCTGAAGTCCACGGAAAATCCCAGCTCCTGTTGGGTTCTTAAGGTCCTCATTTGAAA--------GTGGTAG-AAACTAATTTCACTGGAT-AAGGGGAGGATATCTCATGGATAAATAGCACAACCCAAAAGGTAGAGGCAAATAGAAGGCAAAGGGGGATTCCAAGGTCACTCATTGTA-CTTGGGGCCTTCAGATTCTGCTACTTTATCCCCTAGGACCTTGAAGAACCA-GTGTCTTGA-GGACAGAAAAATCAAGATACCTGATTTGTTCCATAGTGCTCCTGCATTGGGCCATAGAGTTAGTGATGGCCTGGAGGTGGTTACAGCCAGCTCTGTTT---CTGGTGCCCACTGAGCTTTGCTGGAGCAGCTGGAACAAGTAAGAGTCACACATCTCATGTTGTTATCAATGATCTC------------------CACATTATCA-----------------------GGTGGTCAAAAGAGGAAGGGATATTAGAGATCCTCCATATAA-TCACT---TAG-CCAGTC-TTTTTTCCCTTG--CGCTCACCCTTTGCCAGCTA-ACCAGGTGGGTGCAAC---GTGGTACAGAAAAT--TATTACATGATGCCTGCACCCCCCA-ACCCAGGACCAAACATTCTGAGGACAGCTGGATAAAAGCACTAAAGCAAGTATATGTGAAAGAAAAGAGGAAGGACTATA----ATATAAAGTGGAATGTTGAGAAGAAAAGCTGGAAAATTATTGCATGGGAGGAACT--AAGGCCTCATTGT-GGTGATGTTTAATCCATGATAAGGATGACAACAGGGAGACATCTCTGCACAAGT---------ATGTGTCAGGGAGAAGCCACCCTTAGTGAAGAGACTCATAGGTGTGAGTTCGGC----AGAGGTTAGAA--------AGTTTGGC--TGCAAACAGCCTGAGGAAGATA--TAAGTAGAGGGATGGAG-----AATCCTAGGGCCTGGGAGATGAAGTTAGAtatc---tgctcctttctgacaacattgccctaaaagtcagc-act-tttcaac---aacatataatatctcataatttatgtggacca-gaatctggacacagttca-gttgggtacctctgcctttaggtcttttatgacattgggactgtggtcttaactgaagctggactgggaaagcatgagcctttaagctgactca s panTro1.chrUn_random 177564785 1144 - 240967748 AGTGTTCCAGAGCATTGGACTCTGAGACTGAAGTCCACGGAAAATCCCAGCTCCTGTTGGGTTCTTAAGGTCCTCATTTGAAA-------GGTGGTAG-AAAATAATTTCACTGGATAAAGGGGAGGTTACCTCACGATTAAATAGCACAACCAAAAAGGTGGAGGCAAAGAGAGGGCAAAAGGGGATTCCCAGGTCACTCATTATA-CTTGGGGCCTTCAGATCCGGCTACTTTATCCCCTAGGACCTTGAAGAACCAGGTGTCTTGAGGGACAGAAAAATCAAGATACCTGAATTGTTCCGTAGTGCTCCTGCATGGGGCTGTAGTGTTAGCGATGGCCTGGCGGTGGTTACAGCCTGCTGTGTTT---CTGGTGCCCACTGAGCCTTGCTGGAGCAGCTGGAACAAGTAAGAGTCACACACCTCATGTTGTTATCAGTGATCCC-----------------TCACATTATCAG----------------------GGTGGTCAAAAGAGGAAGGGATATTAGAGATCCCCCATATAATTCACC---TAGCCCAGTCTTTTTTTCCCTTGCACACCCACCCTTTGCCAGCTACCCCTGGTGGGTCCAACGTTGTGGTACAGAAAAT--TTTTACATCATGCCTGTACCCCTCATATCCAGGACCAAACAGTCTGAGGACAGCTGGACAAAAGCACTAAAGCAAGTATATGTGAAAGAAAAGAGCAAGGACTATA----ATGTAAAGTAGAATGTTGAGAAGAAAAGCTGGAAAACTATGGCATGGGAGGACAT--CAGGCCTCACCGA-GGTGACTTTTAATCCATGATGAGGATGACAACAGGGAGGCA--TCTGCACAAGC---------TTGTGTCAGGAAGAAGCCACCCTTAGTGAAGAGACTCATAGGTGTGAGTTTGGC----AGAGGTTAGAAAGGGA-CTAGTTTGGC--TGAAGACAGCCCGAGGAAGAGA--TAAGCAGAGGGATGGAG-----AATCCTAGGGCCTGGGAGATGAGGttagatatc---tgctcctttctgacaacattgccctaaaactcagctactgtttcaac---aacatataatatctcataatttgtgtggacca-gaatctggacacagttcaggctggctacctctgccttcaggtcttttatgagattggggctgtggtcttaactgaagctggactgggaaagcatcagcctttaatctgactca s canFam1.chr34 15582258 1181 + 45232793 aaaatgccAGAGCACTGTACACTGCATCTGGGGTCCAGGGACAAGACCAGTCTCCACAAGGCCTTCAGGATCCTCATTTAGATAGGCATGGGTGAGAGCAGGGTCACTCTTCTGGCT-GAGGTGAGGTTCCGTATTTGTAAAGTAG-AC-ACCAATGGAGAGAACAGGAAAGGAATGAAAGGGAGGATTCTGAGGTCCTTTACTCTGCCTTGGAGCCCATAGGTCCTGTTCCTTTG-CCCCTGTGATTCTGGAAAGCCA-CTGCCTTGA-GGACACCCAAATAAAGCTGTCC--TTTCTTTGGTGGTGTGCCTGCCTGGGGCTGTATTGCTAGAGCTGG---AGAACACGATGCAGGAAACCTCCTTTGCAATGGTAACTAGGGACTTCTGCGGGAGGAACTGCAG-AGGAAAGACTCATGCAG---AGGTCATTGT-GGTCATCCCCCTGCCCAGAGACAACTTGAAACTCTTAGTGGCATTTCTCCCTTCAGTCTAGATGGCTGAAAGGGGAAGTGGGTTCCAAGAACTTCTCattgattcattccataa-ctaggc-------actaag--tactcaccctatgccaggta-ccttggtgggcccatgg--atggagctgaaaataccatgagttcctgcctgt-------------aggaactcacagtctgg----aggtggacaaaagcacaaaaacaaagacacgtgaaagaaaagagcaagtgctatattctacacaagactgtatgccgggaaggaaggttgggaaatcattggagagaaaggtataaaaggtctcactgagggtgacatt---gctgagaacagaataacaaaagggagttagatctacacgcgtctggggacagtgtgtcaggaagaagggacccctgatgcagatactaacagaagctgggttggccagaggaggtgaaatgggcagccagcgcggctgtgaggaaag---gaggaggagatctgaggagagggaagagggcagcgaTGCTGAGGCCTGGTAGACt--gttagctatctattgttcctctgttactgtgttgccccgacaccttgc-atc-ttacaattcatatatttaatttctcatcggttttgtggatgaggaatccagacacaaatta-gcttggttcctcaacctcaaggtacatca-gaggttgcagctgtgacctcatgggaggctagcctagcagaggattttctcccaaagtgactca a score=109340.0 s hg17.chr17_random 2268999 1463 + 2618010 tgtgaaaattggcagggtttagtgtggctggagagcctgactttccttctctctactggtctgagcaccccctcaggctc--tgttatgttggtctttacatggagcatctcatagcattgaagcttgcttcCTGTGTTTGAGGTATACAATAGAGAGAGAGAATTAGACAAAAAGGTGTACACAAAAAGAGAC----AGAGAAAGATTGAGGGCGCAAACAGGAAAAACCCAGTAGGAGAAAAATGAGAGCTTTAGAAAAATCTTGACAgggtgcggtggctcacacctgtaatcccaacactttgggatgctgagacgggtggatcacctgaggtcaggggtttgaaagcagcctggacaatatggtgaaaccaccgtctcttctaaaagtacaaaatgagcaaggtgtggtggtgcatgcctgtaatcccagctacttgggagactgacgcaggggaatcatttgaacctgggaggcgaaggttccagcaagccgagatcacaccactgcactcctgcctgggatacaagagtgaaac--tgtctcaaaaaaaaaaaaaaag-------------gaaacaaaaaTCTTGAGAGTTCCAATAATTTTTCTCCTGTATTtatgttaaaattgtaacccccgttgtaatgctatacggatgaaagatgtacttaactcctgagggtgggaccttcataatagagattact-ggctttatacaaggaaccgcagagggctctcttcctccttctgcaaaatgatggtaaaacttgaagtctgcagtctgaaattcagaagcgagtcatcaccagagctcaaccgtgctgacaacctgatctcaaatttcgaacctatagaagtatgagaaattaagtcctgttgtctataagctgcttatctatggttctttggcatagcagcctgaacTAATAC-AAAAGTGATATCCTTTTCTGTATTTCATTGGACAGAAGCTGAATTTG-TACCCCTATGC-TGTT--AAAAAAATGACTT--AAAAtggattttcaga--atgaaagataggaaatggcttgttgaaacactaaaattttatgtgcttataagatttttaaacattggctgaaattgttggaactgatat-ggccaaatgaagtccatgaagaatcagattgcatatgtta-gagcccaaatttccattgtgtgtttcatactaactctccctgaatttgcatgtgacttgagaggaagcaagaagagatgacagtatatgtctcatgactttccatattcctactttccttccagcaatcccttacagaacccacctcttaggccttttctaatcactgccttaaagccagtataagaaaacaaatttcagctggactgctatctcctttttggccaa-cctacaacatgatattttcctcaaaaccc-aagggccatattactgtcatcaggctgtaggccattttATTCAATAAAAAACTGAGTCACTAACCACCTAGTA s panTro1.chrUn_random 177565929 1485 - 240967748 tgtgaaaatcggcagggtatagcgtggacagagagtctgactttccttctctctactggtctgagcaccccctca-gctctttgttatatgggtctctacatggagcatctc--agcattggagcttgcttcctGTGTTTGAGGAATACAATAGAGAGAGAGAATTAGACAAAAAGGTTTACACAAAAAGAGACAGAGAGAGAAAGATCGAGGGCGCAAACAGGAAAAACCCAGTAGGAAAAAAATGAGAGCTTTAAAAAAATCTTGACAgggtgcaatggctcacacctgtaatcccagggctttaggatgctgcgacgtgtggatcgcctgaggtcacgggtttgaaaccagcctggacaacatggtgaaacccccatctcttctaaaaatacaaaatgagccaggtgtggtggcgcatgcctgtaatcccagctacttgggagactgaggcaggagaatcacttgaacctgggaggcaaagtttccaataagccgagatcacaccactgcactcctgcctgggatacaagagtgaaactgtgtctcaaaaaaaaaaaaaaagaaagaaagaaaaaGAAAAAAAAA---CGAGAGTTACAATAA-TTTTCTCTTATATTtgtgttaaaattgtaacccccggtgtaacgctataaggaggtaggatgtaattaactcctgatagtgggaccctcataagagagattactgggctttatacaagaaaccgcacagggttctcatcctccttctgcaaaatgaggataaaacctgaagtgtgcagtctgaaattcagaagcgagtcctcaccagagctcaaccatgctgacaccctgatctcaaattt-gaacctctggaagtatgagaaattaagtcctgttgtctataagctgcatatctatggttttttggcacagcagcctgaaGTAATACAAAAAGTGATATCCTTTTCTGTATTTCATTGGACAGAAGCTCAATTTGCTCCCCCTACACTTGttaaaaaaaaatgacttaaaaaatggatcttcagatgatgaaagataggaaacggcttgttg-----ctagaattttatctgcttataaggtttttaaacattggctgaaattgttggaaccaatatgggccaactgaagtccatgaagaatcagtttgcagatgttaggagcccaaatttccagtgtgtgtttcatactaactctccttgaatttgcatgtgacctgtgaagaagcaagaagagatgactgtgtatgtctcatgactttccatattcctactttccttccagcaatcccctacagaacccacttcttaggccttttctaatcactgccttaaagccagtataacaaaacaaatttgagctggactcctgtctcctcgttggccaaccctacaagatgatattttccccaaaaccctaagggccatactacgggcatcaggcagtaggccattttATTCAATAAAAAACTGAGTCACTAACCACCTAGTG a score=12459.0 s hg17.chr17_random 2270462 98 + 2618010 CTGTGAGATTTTGTGAAGAGTTTCCCTGTCATAGA-CGTGAGAAGGCACATGGATATGATTCTAAATATAAAGAGAAAGCACTAGAAAGTTGAATGGCt s panTro1.chrUn_random 177567414 98 - 240967748 CTGTGAGATTTTGTGAAGACTTCCCCTGTCATAGG-CGTGATAAGGCACATGGATATGATTCTAAATATAAAAAGAAAGCACTAGAAAGTTGAATGGCT s canFam1.chr34 15583712 99 + 45232793 ctgggagccattgtgaagctTGCAGCACCCAGAGACCAAAACGAGGCAACTAGATCTCATTCTAAATATAACAGGAAACAATTGGACGGTTTTATTACA a score=24713.0 s hg17.chr17_random 2270560 331 + 2618010 -gtattaggactttgtcatactgcaatgatgaagtacttgagactgggtaattgataaagaaaagaagtttaattgactcacagttccacataattg----ggagggcacctcagaaaccttccaattacagt-ggctgacaagtgaagtgagtgagagcatgggatgtaccagatgcttatgaaactatcagatctcatgaga----actcactatcacaagaacagcatgaggagaacccgtccccataatccaatcatctcccctcaggtttctcccttaacacctgggggttataatacacagagaagtttgggt-ggaacacacagctaaactatat s panTro1.chrUn_random 177567512 337 - 240967748 Ggtattagatcattctcataatgcaatgatgaagtacctgagactgggtaattgataaagaa---aagtttaattgactcacagttccacataattgcgtaggggg--acttcagaaaccttccaactacagtgggctgacaagcgaagtgagtgagagcaggggatataccagatgcttatgaaactatcagatctcatgagaactcactcactatcacaagaacagcatgaggagaacccgaccccataatccaatcatctcccctcaggtttctcccttaacacctgggggtgataatacacaatgaggtctgggtggggacacacagctaaaatatat a score=126415.0 s hg17.chr17_random 2270891 1127 + 2618010 GAATGCCAGAGGACAGTATCTACATTT-----AATTTCAACTTCATACTGGAG-CAGAATgaaaatgaag-cgcagtggagaagtgacattcccaagatcaccctgccaga---cCCAGGCT-TGTTTGAGTTGTGGCCCATGCTACCTTCTACATATTCTCCTAATGCTTCCATCTCTAAGTGTGTGCATT--ATCTACAGGTAACA---CCA---CATGAtttttatgttttatcttatatacatctaatacaatccctaggaagtagatgttagcatcatccccactgtgtatgcttggaggctggggaa-gcctcaaatacacagtgacttttattgggtcccagagatggtaagAAAAAC---------AAGGTTATGTTCCAGCTGTCTCTTATATCCTGGAACCCAGGCTGCATTTAGTTC---TTTCCAAGGAATTAAGGGGAAGTTGTGTTTGCATACTTGTGTACAAATGAAGAGTTGACATGGAAGAGGAGACTGAACAATTAGTAGCATAGTGGGGCTTTTGGGTAGGTCTTACAGAAAGAAGGGACCCAGTAGATGGAACCTTGAAGAGTTTAACACACTTTCTTGGTGAC--AACCCAACATCAGTTAAGA--------AACCAGGAACCCACATTCTTGAGACAGCTCTGTATCCACCTCTGTTAGTGAGAGATGCTCAAGAGAGTGAGATGTTCTTTCATTGTGCCCTGAAATTTCTGAGTTTTGACTTTACAAAGGCTCAGTGTAAAAGCCTTATCTGAAAACACGGATGTCAACTCAGGCCTCATCATTGATGCCCCTGGCTAT-TGGCT-GGGTGCACCTACAAATAACACAGGGCAGCTCAGGACAGG---CCCCAGAGCCAGGCCTCTCTTGTCAACTCATCTGGGAAGTCCCACAC-------------CATTTCTTA-----------------------------------------GTACCATGAGTTGTATGGGGAGCAAGAG-GGAGGGCACTCTTCTTTTACTGAAGCAGATTGTCAGGTGTTGGAACCCTTGTGTACCTGTCATGTTCATACCT-AGGCCATAGCTGGCAGAATAAAAAGAAGAGGGTTGGAGAACGAGTCTGTGTACTCAGATGTGAAT------TCCAAGACTTTAACTTGTCCTCTGGTTTCCTTCCTTGCTGGAGATTCATACAGATTCTCCTTATGTGCCTAATCTGAAGAG s panTro1.chrUn_random 177567849 1135 - 240967748 GAATGCTAGAGGACAATATCTACATTT-----AATTTCAACTTCATACTGGAG-CAGAATGAAAATGAGGCCCCAGTGGAGAAGTGACATTCCCAAGATCACCCTGCCAGA--CCCCAGGCC-TGTTTGAGTTGTGGCCCACGCTCCCTCCCACCTATTTTCCTAATGCTTCCATCTCTAAGTGTGTGCATC--ATCTACAGGTGACA---CCACATCATTAtttttatgtcttatcttatatacacctaatacattctctaggaagtagatgttagcatcatccccactgtgcatgctaggaggctggggaa-gcctcaaatacacagtgacttttattgggtcccagagatggtaagagaaac---------aaggttaagttccagctgtgtctTCTATCCTGGAACCCAGGCTGCATTTAATTC----TTCCAGGGAATTAAGAGGAAGTTGTGTTTGCATAATTGTGTACAAATGAAGAGTTGACATGGAAGAGGAGGCTGAGCAATCAGTAGCATAGTGGGGTGTTTTGGTAGGTCTTACAGAAACAAGGG-CCCAGTAGAGGGAAACTTGAAGAGTTTAACACACTTTCTTGGTAACAGAACCCAAAAGCAGTTAAGA--------AACCAGGAACCCACATTCTTGAGACAGCTCTGTATCCACCTCTGTTGGTGAGAGATGCTCAAGAGAGTGAGAAGTTTTCTCATTGTGCCCTGACATTTCTGAGTTTCAGCCTTACAAAGGCTCAATGTAAAAGTCTTATCTGACAACACAGATGTCAACTCAGCCCTCATCCCTGATGCCCCTGGCTAT-TGGCCGGGGTGCACCTACAAATAACACAGGGTAGCCCAGGACAGGCTCCTCCA-TGCCAAGCCTTTCTTGTCAACTCATCTGGGCAGTCCCATGC-------------CACTTCTTA-----------------------------------------GTACCATGAGTTGTAGGGGGAACAAGAG-GGAGGGCACTCTTCTTGGACTGAAGCAGATGGTCAGGTGTCGGAACTCTTGTGTATCTGTCACGTTCGTACCC-AGGCCATAGCTGGCAGAATAAAAAGAAGAGGGTTGGAGAATGAGTCTGCGTACTCAGACGTGAAT------TCCAAGACTTTAACTTGTCCTCCGGTTTCCTTCGTTGCTGGAGATTTATACAGATTCTCCTTATGTGCCTAATCTGAAGAG s canFam1.chr34 15583811 1197 + 45232793 GA-----AGATGACAATGTCTGCATCTTGGAGCATTTTCACCTCATTGTGGTGCCCCCGTTAACATGAGG--CCAGACGGAAAGTGACTATTGTGATATTACATTGCTGGAGACCCCAGGCCACTTTTGAGTGGTCCTTCATGCCACATCCCACCCCTTCTTGTCAATCTTCCATCCTTAAATTTCTACCTCAGATATACAGGATACAGGCCCA---CATGTGttataaacatcatc-catagacacctgatgatgtccctaggaagcagatgctagcctggcccccactgtgcaggttaggaaactggggactatgtgagagacacagtgg-gttaggcaggacacagaactgggaaaacaaacagagaaataagggtctaaattcagctctgtctcct---------caaagGTAGGATTTTACTTGCATTTTCAGAGAGTTGTGGCTATGGCATTTTTGGCTCATTGTGTACAGTTAAAGAGATGACATTGGGG-------TAAGCAGTCATCTGCCAAGAAGGGGCTCTAGATAGGTCTGACTGAAGGAAGGGGCCCAGGTGCTGGAATCTTGAAAAAGTGACCTCACTTCCTTGGTGACA-AGCCCACAACTGACTTAGAACTCTGGTAACCAGGAACCTACATTCTAGA-CCTTCCCACTTTTTAGCTCACTTAACTGGAAATGGTCAAGAATACAAGATGTTCTGTTGCTATATTCCTACTTTCTGGTGCTCTGGGCTCAGGAGAGTCTAGAGTGTGAGATTTTCACGTCGCTGTCTATGTCAGCTTGGCCCTCTACTCTGAAACTTCTGGTCATGTGGCG-GGAGACACCAACAGGTACCACAAGGCTGTGTGGGACAGCCCACTGGA-GAGCAGGCCACAC-TGTGATCACACCTGATCAGGCCCAGACCTCAGCAGGCCCACACCTCTTACCCCTCATtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtATCCGTGGGTGGAGAGGGGACAGGAGAGGAACATGCCCTTC-TGGGCAGAAACCAGCTGCCAGGTGTTGGAAGCCTGACACATCTTTTGTGTTCAGACCCAAGGTCATAACAGGCAAGATGAGAAGGTGAGTGCTGGGGACCAAGCTCAACTGCGAATATGTTAGTCATGAGCCCAAGAATCT---CTTTCATCTGACTTCC-TCCTTGCCAGATATCTCTTCAGCGGCCCCTCTTGGTCTGAACTAGAAAA- a score=11520.0 s hg17.chr17_random 2272018 172 + 2618010 CAGAAtttcttttct----------tttcttttc-tcttTTATtttcttt----ctttc------------tttctttctttctttctttctttctttctttctttctttctttctttctttcttctttctttctttctttctttctttctttctttctttcttctttctttctttcttctttctttctttctttctct s panTro1.chrUn_random 177568984 197 - 240967748 CAGAAtttcttttcttttctttttgtttcttttctttttttcttttcttttctcctttcttctcttttccttttctttctttctttctttctttctttctttctttctttctttcttcctttcttttttctttctttctttctttctttctttctttc-ttcttctttctttgttt-ttctttctttccttctctctct a score=3242.0 s hg17.chr17_random 2272190 51 + 2618010 ttctttctttctttctttcttctttttttctctttctttctttctttcttt s panTro1.chrUn_random 63241577 42 + 240967748 ttctttctttctttctttctt---------tctttctttctttctttcttt a score=4820.0 s hg17.chr17_random 2272247 65 + 2618010 ctttcttcttccttacttccttctgtctttctttctctctttttctttttctttttccctttttg s panTro1.chrUn_random 63679757 59 + 240967748 ctttcttcttccttacttccttctgtctttctttctctctttttcttttttttttt------ttg a score=3793.0 s hg17.chr17_random 2272312 43 + 2618010 aggaagcctcgctctgtcacccaggctggagtgcagAGAAAAG s panTro1.chrUn_random 177569189 43 - 240967748 atgaagtctcgctctgtcacccaggctggagtgcagAGAAAAG a score=57850.0 s hg17.chr17_random 2272355 575 + 2618010 CAGAATTTCTAGTGGAGGTGTCACA-TACGGTGAAAACAAGGCAGACCACTGACTTTTCTTTGCGTGG--TTTCTAGGCACTT--TTTACAGAGCTGCATTC---AGATTGATGAGGAGCTTCTTGATGTGGCCAACTCCTCCCTCTTTTTGGAAAAAGACCAGGTGCACTAAGCCAGCAACCACAGCCAGCACCGGGCTGTGGTAAGAGCAGCCACATAGGGGTCTCTACAGACAGAAACC-----CGAGAAGACCGGGACAGACCCAGTACCCAGACTCCAGTATGAAAACTCTCTGGGCTGTGTCCTATGATCTT--CCCATGAGTAACTCATAGTCTT-GATCCAGTGGAATCTG-GCCTTCA---TTAGTCTCAGTGGCAAGTTGGTTATGTGGAAAGTCTCTGTTCACTCACTTGGGTGAATAACAGTAAAGACCTTTC-----------------------TATTGTTTTCACTTTACATTAGGCCATGAGTATTTGTGCCTGTAGCTGCAGTTTGTGTTAGTTT-CCTAC----CCCAGGTATCTCCTGCAGCATGCAGCTTCA--GTCCTACCAGACCCTC----AAAACTTAAAAGCGAACACTATTTCTAGGGAGGAT s panTro1.chrUn_random 177569232 574 - 240967748 CAGAATTTGTAATGGAGGTGTCACA-TACGGTGAAAACAAGGCAGACCACTGACTTTTCTTTGCGTGG--TTTCTAGGCACTT--TTTACAAAGCTGCATTC---AGATTGATGAGGAGCTATTTGATGTGGCCAACTCCTCCCTCTTTTTGGAAAAAGAGCAGATGCACTAAACCAGCAACCACAGCCAGCACCGGGCTGTGCTGAGAGCAGCCACAAAGGGGTCTCTACAGACAGAAACC-----AGAGAAGACCGGGACAGACCAAGGACCTAGGCTCAAATATGAAAACTCTCTCGGCTTTTTCCTATGGCCTT--CCCATGAGTAACTCATAGTCTT-GTTTCAGTGGAATCTG-GCCTTCA---TTAGTCTCAGTGGCAAGTTGGTTATGTGGAAAGTCTCTGTTCACACACTTGTGTGAATAACAGTAAAGACTTTTA-----------------------TATTGTTCTCACTTTACATTAGGCCATGAGTATTTATGCCTGTGGCTGCAGTTTGTATTAGTTT-CCTG-----CCCAGGTATCTGCTGCAGCATGCAGCTTCA--GTCCTACCAGACCCTC----AAAACTTAAAAGCTAACACTATTACTAGGGAAGAT s canFam1.chr34 15585008 576 + 45232793 CATGATTTCTAATGGGAGTGTCCCCTTGTGGCGATGTCCAGGGAGGACCCTAATGTCTCTTGGCCTTGCATATATGGGCACTGTATTTGCAGAGCTGCATCCAGGAGATCTTGGAGGAGATGGTCTGTGGCTTCAACTAATCCAACTCCCTAGACAATTATCAGGTGCACT--------------GGCAAACAAGGATTAGTGCTGTGAGAATGGGAAGAGGGTTCTCCACAGAAATATACCCCCCACACAAACATGGAGAGAAACCTGGGGCCC-------------------------------TCCCATAGTGCTGCCACATGGGTGTCGCACAGGCCCAAATGCAAAGAGATCTGAACCTCCACGCCTAGCCCC--CAGCCACATGATGAGGTGGGAAGACACTCTTCAACTA--TGTTGGAATAGTGCAGAATATATTTAGTGTTTTGAGGGCTTGGTGGGGTTGTTTGTTTTGTTTTTCACAAAGTGATGAGTATCTTTACATTTTACTACTGTTTTTACTATTTCACCTACTCGTCCCAGATATCCTGTGTAGAACCCAGCTCCACTGTCCCTGAAGAACTTCTCCAAAACCTTAAAAATCATCAC----ACTAAAGAGGAT a score=1767.0 s hg17.chr17_random 2272930 25 + 2618010 TTTGCAGGAAAATGGAGAAAGGGTT s panTro1.chrUn_random 177569806 25 - 240967748 TTCACAGGAAAATGGAGAAAATGTT a score=26685.0 s hg17.chr17_random 2272955 210 + 2618010 ACACACAAAAAAGG------TTAAACTACTCTATGCATGTTTCTGCAATGTGTTATCTC-AAGAATTTATC------TCTGTAGCCCATCAGGGCAGGAGCTGGTCTCTCAC--CTGTTGATAATATTCCATAAGGGAGGTTCTTCCCCACAGTGTTTAGTCTTCCGACGCTGGTATAGCCTGACATGATGACATTCTACTTTCATGTTGGTCGTGCTGCAGGGA s panTro1.chrUn_random 177569831 208 - 240967748 ACACAC-AAAAAGG------TTAAACTTCCCTATGCATGTTTCTGCAATGTGTTATCTC-AAGAACTCATC------TCTGAAGCCCATCAGGGCAGGAGCTGGGCTCTCAT--CTTTTGATAATATTCCATAAGGGAGGTTCTTCCCCACAGTGTTTAGTCTTCTGA-GCTGGTACAGCCTGACATGATGACATTCTACTTTCAAGTCGGTCATGCTGCAGGGA s canFam1.chr34 15586142 225 + 45232793 ACACAAAAGGAAGGGTGGGATGAAGCCTTTCTATATGTTTCTCTGTAATGCTTCCTCTCTCAGAACTCATCAAATTATTGTAGGCCCAACATGTCATGAGCTATGTCCTTATAGATCTTCATAGTACTCTATAAATGAGGCCGTCTGCCACAGGATTCAGCCTTTCAAGGCCCTTGGCACTTGACCTGATGCCATTCTCTTGCCATTTCTGCAGTGCTGCAAGGA a score=2722.0 s hg17.chr17_random 2273165 35 + 2618010 GAATTCTGTGAGTGTCCTAATAGGCTGGAATCACT s panTro1.chrUn_random 177570039 35 - 240967748 ATATTCTGTGAGTGTCCTAGTAGGCTGGAATCATT a score=3704.0 s hg17.chr17_random 2273200 26 + 2618010 TGCTAAGTTGAACCCCATCTTTGGTG s panTro1.chrUn_random 177570074 26 - 240967748 TGCTAGGGTGAACCCCATCTTTGATG s rn3.chrUn 51006788 26 - 75822765 TGCTGAGTTAAATTCCACAGTTTGTA a score=14136.0 s hg17.chr17_random 2273226 44 + 2618010 CTCACTTTTCTGTTATCTTATAATTAGCTTTATTCTAAGCAAAT s panTro1.chrUn_random 177570100 44 - 240967748 CTCACTTTTCTGTTAACCTATAATTAGCTTTATTCTAAGCAAAT s rn3.chrUn 51006814 44 - 75822765 CTAAATTTTCAGTGCTTTTAAAATCAGCTGTATTGTAAGCAAAT s canFam1.chrUn 90446460 44 - 91062872 TTGGTTTTTGTGTGCTCTTAGAATCAGCTTCATTCTAAGCAAAC a score=2384.0 s hg17.chr17_random 2273270 14 + 2618010 CCATGTCTATTTTA s panTro1.chrUn_random 177570144 14 - 240967748 CCATGTCTATttta s rn3.chrUn 51006858 12 - 75822765 C--TGTCTACTTTA a score=27143.0 s hg17.chr17_random 2273284 334 + 2618010 TTTATCTGTTTATTAACTTATTTTTATGTATGGAAAAACACAtttttttatttgcttatttatttagagacagggtctccctctgtcatccaggctggaatacagtggtagattggagtgatcatggctcattgcag-cctcaaactcttgagctcaaatgattctctcacctcagcctcctgtg-ccaccatgccctgctagttgattttaatttgttataaagaaagtgtc-tcattatgctgcccaggctggtctcaaactcctgggcccaagcaattctctcatctcagcctcccaaagcactaggattaaaaacatgagccactgTACTGCG s panTro1.chrUn_random 177570158 337 - 240967748 tttatctgtttatttacttatttTTATGTATGGAAAAACACAtttctttatttacttatttatttggagacaggatctccctctgtcacccaagctggagtacagtggtagagtgttgtgatcatggctcattgcagccctcaaacatttgggttcaaatgattctctcacctcagcctcctgtgcccacaatgccctgctagttgattttaattttttataaagaaggagtcttcattatgctgcccaggctggtctcaaactcctgggcccaagcaattctctcatctcagcctcccaaagcactgggattaaaaacatgagccactgTACTGCG a score=11025.0 s hg17.chr17_random 2273618 53 + 2618010 C-TGTGCCTACTTCAAAGGACTGAAAATAAAAAATAAATAAATCTTTGCCAAAT s panTro1.chrUn_random 177570495 54 - 240967748 CGTGTGACTACTTCAAAGGACTGAAAATAAAAAGTAAATAAATCTTTGCCAAAT s canFam1.chrUn 90446504 52 - 91062872 -CTGTGTCTACTTCAAAAGACTGGAAATAGAAAA-AAATAAATCTTTGCCAAAT a score=271289.0 s hg17.chr17_random 2273671 3593 + 2618010 TAAAAAAcaaagcaatagtttccaggtcttagataaagacaattctctgtcatgaagaatgacagaaggcttatttagctgttaaaatgatttgcttatatttcaaagaagcagagaaaaaaaggtacatgtaaaagtgttccaggccactcatggtggttcatgcctgtaatctgaacatttggggaggccaaggcatgaggataccttcaagccaaatgtttgagtccagtacaggcaatatggtgaaattctgtcactacaaa-----aaaataaaataaatatggctgggcatgttggctcacacctgtaatcccagcactttgggagtctgaggcaggtggataatgaggtcagggggtggagaccagc-ctggccaaaatggtaaaacccattctctactaaaaataataataacaaaaaattagccagacatg-gtggtgtgcgcctgtaatcccagctactcaaaaggctgagacaggagaattgcttgaacctgggaggtggaggttgcattgagacaagatcatggcactacactccagcctagcccacagagcaagacactgtcttgaaaaaaaataaaaacaaaaataaataaagctagccaggcatggtggttcatgcctatagtcctaggtaattaagcggttgatgcaggaggactgctcaaacccaagaggttaaggttaccgtgagctatgattatgccgttgcacttcaggctaagtaaaagagtaagattctgcctcaaaaaattactaattaaagttttccagattacattgtttaagaaaaaggaaaagaaaaaa--atctttttttt--attttcaaatgggagaatagagcctctcatttctaatttgtattgccttCTGCAAAAACTTAGTCTAGGCCCATGGTCTTGAACTACTGGACATCTGAATTTTGGTAGGTGCTGGATTCAGGCAACTGAGGGGTGGCCTTGGGCACACTGTGTGCACATAAAAGAAAGGGTTTGAGGTGAACTAAAAGGTAAAAGAGGGGAAGGTGCTATTAAGAAAC-CAGAAgtgagagactgtacagggttggtgggaggactggttcatgctacagacactgacccaggtgaaacttttctctgagttatttctatgttcatgcaggaagacgagattatgatcaggtggcacagaaatct-gcgatggtgaaaaaaccaggttgccactgc-agattcggtgtctgaagtagaacatatgccaggggtcttgtaggcacgtgtgtgggtttttggtgggaaagtctatgaggaaaggtaggatgggcaacaatcttgatgccaaagccttgtcctgagaggggcttgaccacgtcaacatgcagtgtgtatgttcagtgggtgaaaaacatgtggtgacctcaggttggcaggagggtagaaggcatctgttctcagaacttcttccctcagagtcgtcggtccttcttaccatgggaggatgcctggaaccacagggcagtgcatggcgtagcagcctgtgtgcagagcagaacctaccttccccgagacacctggagtctctctccagcaaaggccccCACATtgtctttctccttacaacacttttgatcctaaatgtgtaaagttccctgaaaacccactgcttctccaacacccatttcttgccccaaaatttaattctgacacaacttagagttcgcacagatcccacaaattcagggctaagtcccacatcacccctctcactgcagaggttagtcacatgtcccataagcccatctatacttctgagcta-ctgcctataaatctgagactcccataaaccccttttc-aagttaaataatttgatagag-ttactcaaaaaa---actcaacaaataagtcta-attatatttaccactttattataaaaatacaactcagaaactgacaaatgaaagagatgtctaggaaaaggAACAGTTGTGGGTGAAGGTAAtcctggaaatagctatatttaaagaaattcccccattctttgtgttctcaaagaacagcttagtgaagagaaacgtgcttcccattatgactttgtggatgttccccccccccccc----ttttttttaacctatcacaaagacggacacagattacaaattcctatttttaaaaatgaacaaccattctgtaatttagtcttcagtggtcaaaacagagtacttgttaacaaaactttgcttgttccccttcttcc--ctcagcccctgaactttgactcacccacagcctcagagaacctacaacccatatttatacatatccctcctaagaacaggctgacttcaagatgaaacattatcttatctgggatctgattttgctaccctccatcctgtgcttcctttccaaccttctttgtaaacttattttctcctccctatgaaataaaacc-cttttccacctaacctttgagatcctcaaagatctaatcatttgtactttttccttgttacaaCACTTCTTAAGTAACTTCTTAGacaaagtctataaacagtctcaggacaataacaactccattctagaaagaatatcccaacttttcttcaatctcaaccccaactgcatctgcctgtcaacttccagcttaccaaagctctgtatcttctgacagtgacaaaggctccttctatggttggtgtgagcagactttgatgtctgcagggcagacacccaggaataatcaactgggccttcagtggcccccttttgcagggtcaacgttagccttagcttttagt-caacggtctaagacttctacttaccagttaaagtcattcaattagttttcaatttaaaaaatacttcatgtttgaagaatccagcaaaaatcattcaaatctaaggtttaaaagagaggaaattatggtcgggcatggtggctcatgcctgtaatccctgcattttgggaggctgaggcgggcagattacctgaggtcaggagttcgagaccagcctcactaacatg-aagaaacacagtctctactaaaaatacaaacttaaacgggggtggtcgtgtattcctgtaatcccagttacttgggaggccgaggcaggagaattgcttgaacccgggaggtggaggttacagtgagccaatatcgtgccattgcactccagactgggcaacaagagtgacactaagtctaaaaaataaaat-------taaaat-----------------taaaaaagaaa----gttataaggggcttacattttataactcaacaagaaaagccaaagtatctatccctttcagaaaataaacatgtaatttaattatgttcataacaaatcatttagtaaACAA----TCATATGTGAACACTTCCAGGCGGTGCCAAGTCCCAGCTCCTAAAACTTAGCGTTACCCTCAAACACCCAGATGACAGCATATGGAACAGAGATACTCACTATCAGAAGTTCTCTGTTTtg-aaaaaagaataactgatgtgataaatttatgtaatttaacaattaatctacctcacgtgcttgtaggtatgtattcatttcctaccaccgtagtggaagagagactatccctatCAATACACCTGGTAACATTCCCAACAGTAAGCCGTGAGATTCTGC s panTro1.chrUn_random 177570549 3632 - 240967748 TAAAAAACAACGCA--Agtttccaggtcttagagaaagacaattctgtgtcacgaagaatgacaaaaggcttatatagctgttaaaatgatttg-ttatatttcaaagaagcagag-aaaaaaggtacatataaaagttttccaggccaggcatggtggttcatgtctgtaatcccaacatttggggaggccaaggcaggaggatctcttgaagccaaatgtttgagttcagtataggcaagatggtgaaattatctcaccataaaaaaataaaataaaataaatctggctgagtatgttggctcacgcctgtaatcccagcactttgggagtctgaggcaggtggataatgaggtcaggggttcgagaccagtgctggcccaaatggtgaaaccctttctctcctaaaaataataacaataaaaaattagccagacatgagtggtgtgcgcctgtaatcccagctactcaaaaggttgaggaaggagaattgcttgaacctgggaggcagaggttgcattgagctaagatcatgccactacactccagcctggcccacagagcaagacactgtcttgaaaaagaa-aaaaacaaaaataaataaagttagccagtcatggttgttcatgcctatagtcctaggtaattaagaggttgatgcaggaggactgctcaaacccaagaggttaaggttacagtgagctatgattatgctattgcacttcagggtaagtaaaagagtaagattctgtctcaaaaaattaataataaaagttttctaaattacattgtttaagaaaagggaaaagaaaaaactatc---tttttaaatttttaaatggaagaatagagcctctcatttctaacttgtatttccttCTGCAAAAACTTGGTCTAGGCCTATGGTCTTGAACTACTGGACATCTGAATTTTAGTAGGTGCTGTATTCAGGCAACTGAGGGTTAGCCTTAGTCACACTGTGTGCACATAAAAGAAAGGGTTTGAGGTGGACTAAAAGGTAAAAGAGGGAAAGGTGCTATTAAGAACCACACAATtgggagacagtagagcgttgatggaaggactgg-tcatgctacagatactgacccaggtgaaactttgctctgacttatttctatgtccatgcaggaagatgagattatgatcaggtggcacagaaacctggggatggtgaaaaaactaggttgccactgcaagattcggtgtctgaggtggagcatatgctaggggtcttgtaggcatgtgtgtgggtttttggtgggagagtctatgaggaaaggtagcgtgggcaacaatcttgatgctgaagccttgtcctgagaggggcttgatcacatcaacatgcagtgcgtatgttcagtggttgaaaaac-tgtggtggcctcaggttggcaggagggcagaaggcatctcttcttagaagttcttccctcagagttcttggtccttctcacagtgggaggatgcctggaaccacagggcagtgcatcgtttagcagcctctgtgcagagcagagcctaccttccccaagacacgtggagtctctctccagCAAAGTCCCCCACATtgtctttctttttacaacgcctttgatcctaaatgtgtaaagttccctgaaaacccactgattctccaacacccatttgttgccccaaaatttaattctgacacaacttggagtttgcacagaccccacaaattcagggctcagtcgcacatcaccgctctcactgcagaggagagtctcatgtcccggaagcccatctatacttctgagctacctccctataaatctgagactcccataaaccccttttctaagttaaataatttgatagaatttactaaaaaaaaagactcaacaaataactctagattatatttaccactttattataaaaatataactcagaaacagctaaatggaagagatgtctaggacaaggAACAGTTGTGGGTGAAGGTAAtcctggaaatagctatatttaaagaaatt-atccattttttttgttctcaaagaacagcttagtgaagagaaatgtgcttcccattatgactttgaggatg---------ctccccactgttttttttaagctatcacaaagatggacacagattgcaaacttccatttttaaaaatgagcaaccattcagtaatttagtcttcagtggtcaaaacaaagtactcgttacaaaaactttgcttgtttctcttcttccaac-cagcccctgaactttgactcacccacagcctcagcaaacctacaacccttatttgtacataaccctcttaagaacaggctgacttcaaggtgaaacattatcttttctgggacccgatttcgctatcttccatcctgttcttaccttccaaccttctttgcaaacttgttttctcctccctatgaaataaggccgcttttccacccaatctttgagatcctcaaagatctaatcatttgtactttttctttgttgcaataCTTCTTAGTTAACTTCTTAGaccaagtctagaaacagtctcagggcaataacaattccattttagaaagaatctctcaacatttcttctatcccaacctcaactgcatctgcctgtgaactttcagcttaccaaggttctatgtcttctggtagtgacaaaggctccttccatggttggtgtgagcaggcttagacacctgcagggcagacacctaggaataatcaactgggccttcagt-gcccccttttgcagggtcaatgttgtccttagcttttagtccaatggtctcagacttctacttaccagttagagttattcagttcgttttctatttaaaaaatacttcatatttgaagaatccagcaaaaatttttcaaatctaaggtataaaagagaggaaattatggccaggcatggtgacttatgcctgtaatccctgcattttgggaggccgaggcaggcagatgacctgagatcaggagtttgagaccagcctgaccaacatgaaagaaaccccgtctctactaaaaatacaa--ttacccgggtgtggtggggtatgcctgtaatcccagctactcgggaggctgagacaggagaatcatttgaacccaggagatggaggttgcagtgagccgaggtcatgccattggactccagcctgggcaacaagagtgaaactacatcttaaaaataaaataataagataaaataaaataaaataataaaataaaatagaaacaacattataaggggcttacatcttataactcatcaagaaaagccaaagtatctatccctttcagaaaataaacttgtaatttaattatgttcataacaaatcatttagtaaacaattactcatatgtgaacaattccaggaggtgccaagtcccagctcctaaaacttagcattaccctgaaacacccagatggcagcatatggaacagagatattcactttcacaagttctttgttttgaaaaaaagaacaactgatatgataaatttatgtaatttgacaattaatctacttcatttccttgtggatatgtattcatttcctaccactgtagtggaagagagaatatccctatctttacacctggtagCATTTCCAACAGTAAGCTGTGAGATTCTGC a score=31333.0 s hg17.chr17_random 2277264 250 + 2618010 TTGAAATCACCTCTCAGACAAATAAAAAACAGTCCTGGGAAATGTACGACACTCATTCTGCTAAAGAAATAGGCAAGT-AACAATTTTTAAC-AAGTGAAATATATTACT--ACTTAATTTTATTCAAAATTCACCAACTTAATG-TGCTTTATAAATATTTTCATGCCT---TTCAAGCTCTACTGATAAAACATAGtttacagttaattaaaaagtgaagttaaagtaagtacaaaaacattttcaaggtgacaaa s panTro1.chrUn_random 177574181 252 - 240967748 TTGAAATCACCTCTCAAACAAATAGAAAACAGACCTGGGAAACCTACTACACTCATTCTGCTAAAGAAATATGTAAGTAAACAATTTTTAACAAAATGAAATATATTACT--ACTTAATTTTATTCAAAATTCACCAACTTAATG-TGCTTTATAAATATTTTCATACCT---TTCAAGCTCTACTGATAAAACATAATTTACAGTTAATGAAAAAGTGAAGTTAAAATAAATACAATAATATTTTCCAGGTGACAAA s canFam1.chr20 8788708 243 - 61172541 TTGAAACCACCC-----AGAATTAAAGAATAGGCCTCAAAAACTTACAACACACTCTCTGGACAAGAAAAAGTGAAAT-TAAAATCCTTAAC-AAATGGAATGTAATACTAGAATATCTTTTTTCTGAAATTCACCACATTTTTACCTCTTTGGAAATATTTT-ATACTTTTCTTCAAGCTCtattaattaaataaattttatCCCTATTGGAAAAA-GAAAT--AAATTAGTAC----ATCTTTTTAAAATGACAAA a score=15928.0 s hg17.chr17_random 2277514 199 + 2618010 attagaaggtgacagtgccgattgaaacacagacatatcagacccaagggtcAAGTCAAGCCATTCTATTACTTGGGATATTTTCCCCACTCACATCTGGTTCAGTGAAGTGGGTCATGACCATCCTACCAGGAGCCGCTACCCTGTGCTCCTCTGTGTCCCTGAGGTGCATTTTACTTT-GCAGGTTTTTGCACTGCCT s panTro1.chrUn_random 177574433 199 - 240967748 ATTAAAAGGTGACAATGCCGATTGAAACACAGACATATCTGACCCAAGGGTCAACTCAAG-CATTCTATTACTTGGGATATTTTCCCTGCTCCCATCTGGTTCAGTGAAGTGGGTCATGAGCATCCTACCAGGAGCCGCTACCCTGTGCTCCACTGTGTCTGTGAGGTGCATTTTACTTTCGCAGGTTTTTGCACTGCTT a score=9759.0 s hg17.chr17_random 2277713 67 + 2618010 CACTAGGTTGGGTTTCTTTGTCCTTTGAAATATTTTCTCTCCCTTCACCAATCTGAGAACATTTTTT s panTro1.chrUn_random 177574632 67 - 240967748 CACTAGGTTGGGTTTCTATGTCCTTTGAAATATTTTCTCTCCCTTCACCAATCTGAGAACACTTTTT s mm5.chrX 85906926 67 + 160634946 CATAAGGTACATTTTCTTTTTTCTTTGGCATAGTTTATAGAACTTTATCAACACTGAAACATTTTTT a score=26119.0 s hg17.chr17_random 2277780 313 + 2618010 CCTCAATATCAGCATCCATTTGCCTGGCCTGCAATGTGTCTCTAAGGAATGGAAACTAAGCTTTGGGGTAAGAAAATCTTAATGACCTAATGGGTTTGCTTTTAGCGCAAGGGTATACCTAGAGATTCCTTCCAGGCACAGCTCAAACAACCACTCCACAGAGAGGCTGCATTCCCATACCTTGGGCTGTTCCCTGAGAGGAGATGACACAAGGGATGCTATTTACTAGACACTTCAAGAGTCATGGCCACTGTTGGCATCTTGGGGAATCCTCAAACAGTTTTGAAATTCAAAACCAAGAAAATA--ACAGGAT s panTro1.chrUn_random 177574699 315 - 240967748 CCTCAATATCAGCATCCAGTTGCCTGGCCTGCAATGTGTCTCTAAGGAATAGAAACTAAGCGTTGGGGTAAGAAAATCTTAATGTCCTAAGGGGTTTGCTTTTAGTACAAGGGTATACCTGGAGATTCCTTCCAGGCACAGTGCATCCAACCGCTCCACAGAGAGGCTGCATTCCCATACCTTGGGCTGTTCCCTGAGAAGCAATGACACAAGGGATGCTATTTACTAGACACTTAAAGAGTCATGGCCACTGTTGGCATCTTGGGGAATTCTCAAACAGTTTTGAAACTCAAAACCAAGAAAATAACACAGGAT a score=31246.0 s hg17.chr17_random 2278093 355 + 2618010 GGCTG--AGGATGTATTGCCCTGTGAAGTTTCCAAAATGAAACCTGAACCC-AAAGGCTTTCTGATGGGGTGTCTGTG-CCAAGAGAAGTTTAAACAAAG-GGGCACAAAGGTTTTCCGCTTTTTATTTATTTTTTTTACAGTGGGGTGTCAGGGGATTATTCTCTGCTTTCATCT-CCTGTAAAATGT-------------------TTACAAATGAG------------AAAAAATTTTTTTAAATGACATCCACTGCT--TTTTGACAAAAA--GAAGAATTGAAATACTGTGTCTGAAATGTACAATAAAG------AACAGTTGATA---ATGTTGTGAATTATGGAAGGTTAGTTAGTGTTGGTGAGTGTCAGGAAAGAACTGGAAATTTAAAATCTGA s panTro1.chrUn_random 177575014 347 - 240967748 GGCTG--AGGATGTATTGCCCTGTGAAGTTTCCAAAAGGAAACCTCAACCC-AAAGACCTTCTGATGGGGTGTCTGTG-CCAAGGGAAGATTAAAGAAA--GGGCACAAATATTTT---CTTTCT-----TTTTTTTTATTGTGGAGTGTCAGGGGATTATTATCTGCTTTCATCTCCCTGTAAAATGT-------------------TTACAAATGA-------------AAAATATTTTTTTAAGTGTCATCCACTGCT--TTTTGA-AAAAATCGAAGAATTAAAATACTGTGTCTAAAATGTACAATAAAG------AACAGTTGATA---ATGTTGTGAGTTACACAGGTTTAGTTAGTGTCGGTGAGTGTCAGGAAAGAACTGGAAATTTGAAATCTGA s canFam1.chr20 52381360 374 + 61172541 GGCTGGCAGGACAGATCACCCAGGAAACTTTCAAAAGAGGAACCTCCCCCCAAAAGGACTTCCCACAAGATGTCTGTGCCCAGGAAAAGATCGTGGGAGGAGAGTAACAGGATTTC--------------------ATAAAATGTAGTTACAGGTGGTTATTCTCTGCTTGCTTCT-CACGTAAAATATCCAGACAAAAATATAAACATTTAAAATGAGCCGTCCaaaaaaaaaaaa-------aaaaaaaaGCCGTCACTGACTGTGA-AAACGCTAAACGATTAAAACACTGTCTGCTAGAATTGCACCAAGGAAGACAAACAGTTGATACTGATGCTCTGAACTGGACAGGGGAAGCTGGCGTCTGGGGACGCGGGGCAGGATCTGGAAACAAGCATTTA-- a score=15123.0 s hg17.chr17_random 2278448 100 + 2618010 TTGCAAGCC------AGAGTTAGGCTGGGGCAACAGGGAGTTAGATTTGAGTCTCTGCCTGCCACACATTTGGAAAATGCATGAGAAAACTAGTTCCCTTTTGGAG s panTro1.chrUn_random 177593342 100 - 240967748 TTGCAAGCC------AGAGTTAGGCTGGGGTAACAGGGTGGTAGATTTGAGGCTCTTCTTGCCACACATTTGGAAAATGCATGAGAAAACTAATTCTCTTTTGGAG s canFam1.chr20 52381734 105 + 61172541 TTGCCAGTCCCAGGAAAGGATAGGCTTGGG-GACAGGGTCGTGGATTTGATCCTCTGCTTCCCAAACATTTGGAACACTCAGGAGAAAACGGGCGCCCCCCAAGAG a score=66602.0 s hg17.chr17_random 2278548 871 + 2618010 tgttaaaataactaaaaaacaggtgattatgttgaggtggctctagtgtcctgagctcTGAGTGgagagacaggccaaggcctccgtacttccaaaaagctgcccattcttctccagctgtgcacctgattagatagtttccactccaagacccatgattggatgtagttcaattccctaccctgccgcctcagaccatgagtgacatatgtgatttgacactgggttgaataaagcaagaattataggtttttcctggatccttttctagcagggcttcctctgtgaactagaaactggcccTGCCTGTAAAATATTTGCATTTACATTTGTATGTAAGATTATTTGTATTAATGAATAATATATATGTGTTATTCATATATGGAATCAATATAATGACAATTGTTTTAAAATTTCAGATGTTTTACTTTCCTGGCACATCCAGGTTTTAGAGCAGGCAGCCTGAGATTTCAAAAGGGAGGCAATTCTTTAAGAAATAATATGAGAGGCACAAGTGAATTTTAAATATTCTGGTAACTACATTTTAATAAATACAccgggcatgcttccctgtgcctgtaggtcgaactattagggagactgaggtgggaggatcacttgagaccaggagtttgagaccagcccaggcagcatagagaaagccatctctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattgaaaaattagccaggcctggtggtgcatgacttcagtcccagctactcagaaggctggagctggaggatcacctgagcctgggaggtcaaggctgcaatgaaccatgatcacacaactgcactccagcctggctgacagagcaaaactctgtctcaaaaaaCT s panTro1.chrUn_random 177593442 844 - 240967748 tgttaaaacaactaaaaaacaggcgattgcattgaggtggctctagtgtcctgagctcTGAGTGGagagacaggcaaaggcatccctagatccaaaaagctgcccattcttctccagctgtgcacctgattagataatttgcactccagaacccatgattggatatagttcaattccccaccacgccccctcag--------tgacatatgtgatttgacactggattgaataaagcaagaattataggtttttcctggatccttttctggcagggcttccttcatgcactggacactggcccTGCATGTAAAATACTTGCATTTTCATTTGTGTGTAAGATTATTTGTATTTATGAAAAATATATATGTGTTATTCATACATGGAAGCAATATAATGACAATTATTTTAAAATTTCAGATTTTTTACTTTCCTGGCACACCCAGGTTTTAGAGCAGGCAGCCTGAAATTTCAAAAATGAGGCAATTCTCTAagaaataatatgtgaggcacatgtgaattttaaatattctagtagctacattTTAATAAATACAccaggcatgcttgcctgtgcctgtaggttgaactctttgggagactgatgtaggaggatcatttgaggccaggagtttgagactagcccaggcagcatagagaaagccatctccacaaaaaaaaaaaaaaaaaaa---------------ttgaaaaattagccatgcctggtg---tatgccttcagtcc-agctactcagaaggctggagctggaggatcacctgagcctgggaggtcaaggctgcagtgagccatgatcacaccactgcactccagcctcactgacagaacaaaactctgactcaaaaaaCT a score=26789.0 s hg17.chr17_random 2279419 206 + 2618010 GATCT-CTGGAAAGGCAATTTGTTTTTCTGCAATGTAGCCAAGCAGCTAAGTATGTAT-TGAAGCCATCCTTTAATTTTTAACAGGGCAAGAAAGCTTTCTAAGACCCCGAACTCCAGATATGCGATGGGGCAAATCCTGAAGCGTACATGGCTATCTCTCACAGCTAAAGCATCCCTCACCCCTATCcagtgcttcttacccctggc s panTro1.chrUn_random 177594286 206 - 240967748 GATCT-CTGGAAAGGCATTTTCTTTTTCTGCAACGTAGCCAACTAGCTAAGTATGTAT-TGAAGCCATCCTTTAATTTTTAACAGGGCAAGAATATTTTCTAAGACCCCGAACTCCAGATATGTGATGGGGCAAATCCTGAAGTGTACATGGCTATCTCTCACAGCTAAAGCATCCCTCACCCCTATCcagcgcttcttacccctggc s canFam1.chr35 8085722 172 + 29506910 GATCTGCTAAGAAGACATTTCCTCCTATTGTAGTTTAGACAAATAGCTGAGT---TATCTGAAGTAGTCCTTTGA-TTTTAACAGGGCAGAGCTGTTTTCTAAAACCCC------------------------------AGAGCGCACACA--CATCACTTACAGCAGATGCATCCCTGGCCTTGAATCTGTGGTCCTCACCACGGGC a score=2652.0 s hg17.chr17_random 2279625 29 + 2618010 gcaagagaatcacctgcggggaggaaaac s panTro1.chrUn_random 177594492 29 - 240967748 acaagagaatcacctgcggggaggaaaac a score=81040.0 s hg17.chr17_random 2279654 587 + 2618010 tttcaaaatcccttaaacccaagttgtaaccgcacaactaaatcagaatccttggagctggatctgaaaaaaatatggttgaaagtcgtgcaggtgattacaatgtgtaggcaagccagaaaaccaTGGCTTTAACGAGCAGCTT------------TTGTTAGAAATGATTTCTCCAATGAA-TGTGAAAACGTTTGCTGCTGAATTGTGACCTTTCCATTTTATCTGCT-TTTCCTGCAAAGTATATTTTGCAGACCCGGGCTGGCTTCTCCTTCT------GTTCCTGGTTCACCCAGTGCCGTGTGTGCTCAGTGCATCCTGTGCACGGGTCACTGTG-----TGCCCTGGCCTGGGTGAGCATCATTCTTCGGG---GAGAACCTTGATG--AAAACAAAGCTGCATTCCAAAAAGTTAAAACCATGCTACTTACTGTGTTGAAGTAAAAATTAAAAGACCCAGGGGGGCTCACCCAAAAGTTAAAACATAAATAAATAACTTGG-AACATTAACATACACCTGATGATGTCCTGAGTGAACACGCCCCACTTG-------AAAACAAAACAAAACATTGCTATTATTCTAAAATATTAATTTAGGATTGTTATGCAAAC s panTro1.chrUn_random 177594521 592 - 240967748 tttcaaaatcccttaaacccaagttgtaaccgcacaactcaatcagaatccttggagctggatctgaaaaaaatacggttgaaagttgtgcaggtgattacaatgtgtaggcaagccagaaaaccaTGGCTTTAATGAGCAGCTT------------TTGTTAGAAATGATTTCTCAAATGAA-TGTAAAAACATATGCTGCTGAATTGTGACCTTTCAATTTTACCTGCT-TTTCCTGCAAAGTATATTTTGCAGACCCAGGCTGGCTTCTCCTTCT------GTTCCTGGTTCACCCAGTGCCGTGTGTGCTCAGTGCATCCTGTGCACGGGTCACTGTGCTGTGTGCGCTGGCCTGGGTGAGCATCATTCTTCGGG---GAGAACCTTTCTG--AAAACAAAGCTGCATTCCAAAAAGTTAAAACCATGCTACTTACTGTACTGAGGTAAAAATTAAAAGACCTAGGGGA-CTCTTCCAAAAGTTAAAATGTAAATAAATATCTTGGTAACATTAATATACACCTGATGATGTCCTGAGTGAACACGCCCCACTTT-------AAAACAAAACAAAACATTACTATTATTCTAAAATATTAATTTAGGATTGTTATGCAAAT s canFam1.chr35 8086108 605 + 29506910 TGCtgaaattcccagaacccaaattacaacagatcaatcaaatccaaatccctggagtgggacctgggcatcagcatttttagagctcttcaggtgatcacagtgtctgaccaaggctgaacagcactgCTTTAA--ACCAACATCACTGGGTCAACTAGTTGCAAATAGTGGATTAAATAAAGTGTAAAAATGTTTGCCGGTGAG-TGTAACCTTTCGGTCTTATCTACCATCACCTGCTCACTCTCCTGTGCA----CAAACAAGCCTCTTGTACTAGGTTGGTTCCC-GTCCACACAGCTACACGAGTA--TGGTGTATACCACGTGCAAGGCACTGCGCTAGGTGTCCTGGTGCTGGTAAACA----TCTTTGGAAATGAGGACTTCTCTGGAAAAAAAAAAATGCATCATAAAAAATCAAAACCATGTGACTTACCAAATTGAAGCAAAAATAGAAAGACCCTAGGAA-CTCACCCAAAGTTTAGGAC----AGTAATACTTTGG-AATATTAAAATCCACTTGACGATGCCCTGAGCAAACATGTTGTACATGTTAACACAAAACACAACAAAATGCTGCTGTTATTCTGCGATATAGAGTTAGGATTTTTATGCAAAT a score=4001.0 s hg17.chr17_random 2280241 24 + 2618010 ATGCACTCtttacatttttattga s panTro1.chrUn_random 177595113 24 - 240967748 ATGTACTAtttaaatatttattga s canFam1.chr35 8086918 24 + 29506910 ATGTAGTATTTAAATTTTAATTAA a score=20797.0 s hg17.chr17_random 2280265 146 + 2618010 taaata---------------------------acatgcatacagcaatataggcacaaagcatttagggaatgtttgatgaattattactaaataaatacacttgtgtatctaa------gaatcagatTTGTTCATGC-CCCTGA----CACTTTCCCCTTCC--------CAAAGGTAACCAAGACCTT s panTro1.chrUn_random 177595137 146 - 240967748 tgaata---------------------------acatgcatacagcaatataggaacaaaatatttatggaatgcttgatgaattattactaaataaatacacttgtgtaTGTAA------GAATCAGATTTGCTCATGC-CCTTGA----CACTTTCTCCTTCC--------CAAAGGTAACCAAGACCTT s canFam1.chr35 8087110 192 + 29506910 CAAATAAGTCCTAAAAATAATTGTTTAATTGACatatgcatacagaaatatatgcagacacaattcatgtaaagctcagtgaattattacagactgaatacacttgtatagccaAGAGCTTGAACCAGCTTCGTTCAGGCTTCCTGATAATCACTCTCCCCCTCCCTCTGTCACAAAGGTAACCGATGTATt a score=27237.0 s hg17.chr17_random 2280411 364 + 2618010 AAGAGCTAAGTGTAGATAAACTTTGTCATTTTGTACAAGTGTTTTATTACAGATCACTAAAAAC--ATACACAATACAAAAAAA-GTATAacagaccagtcacccagctttaacagctgctagtcatgtgtcatttttgttttatctatacttccaGCCATGCCCCCACCCCCAATTTCATTATTTTTTAGGCTTTTTGGATAAAATGTATATTCATTGCAAGGTACAATGCGAACTGTAAATAGTAGagagatggggttttaccatgttggtcaggctgttcttgaactcctgacctcaggtgatccactctcttc---cacctcgcaaagtgctgggattacag-gcgtgagccaatatactcggccTG s panTro1.chrUn_random 177595283 365 - 240967748 AAGAGCTAAGTGTAGATAAACTTTGTCATTTTCTACAAGTGTTTTATTACAGAACATTAAAAATGTATACACAATACAAAAAAAAGGATAacagaccagtcacccagctttaacagctactagtcatgtgtcatttttgtttcacctatacttccagccat--tcccacccC-AATTTCATTATTTTTTAGGCTTTTTGGATAAAATGTATATTCATTGCAAGGTACAATGTGAACTGTAAAtagtagagagatggggtttcaccatgttgaccaggctagtcttgaactcctgtcctcaggtgatccacctgcttcggctacc---caaattgctgggattacagagcgtaagccaatatactcggcCTG a score=5748.0 s hg17.chr17_random 2280775 31 + 2618010 AGAATTCATATTTCTAATAAAGTACAAATCC s panTro1.chrUn_random 177595648 31 - 240967748 AGAATTCATATTTCTAACAAAGTACAAATCC s canFam1.chr25 40315894 31 + 54436876 AAGATTCGGGTTTTTAATAAGATACAGGTCC a score=14112.0 s hg17.chr17_random 2280806 146 + 2618010 ATAGGGCA-----CATGACAACTGCAATGTCTATCTACAGTAAAAACAGTTTGATGAATAAAATGAAAGGCAATTGACTTAAGGTGGGAAA-----AAAA--------CAATCAAAGCATGGGTACTATGTGCCATCTGTAGGAGCATTTGGTTAAGAATAACA s panTro1.chrUn_random 177595679 154 - 240967748 ATAGGGCA-----CATGACAACTGCAATGTCCATCTACAGTAAATACAGTTTGATGAATAAAATGAAAGGCAATTGACCTAAGGTGAAAAA-----AAAAACAAAAAACAATCAAAGCATGGGTACTATGTGTCATCTGTAAGAGCATTTGGTTAAGAATAACA s canFam1.chr25 40316102 144 + 54436876 ATAAGGTACAGATCATACCAACCTC-CTTTTTATTCCCAG---ATAAACTTTGATGAATAAAA------ATAATTTACAAAATGTCTTCAATGCTTAAAA----------GTTAAGATACCTGCATAATATGTCAAATTTGGAAGaattttattaataatgaaa a score=10202.0 s hg17.chr17_random 2280952 118 + 2618010 AACAAACCAGTTTTATTGTTTTAATAACCGAAATTGGCAAAATTTCTAGTTTTTCTTTCATAGGAATGCTCTTAGCAAGAAAAAATTTTCATATGGTGAGAGCAAAAATGACAACCAT s panTro1.chrUn_random 177595833 118 - 240967748 AACAAACCAGTTTTATCGTTTTAATAGCCGAAATTGGCAAAATTTTTAGTTTTTCTTTCATAGGAATGCTCTTTGCAAGAAAAAATTTTCATATAGTGAGAGCAAAAATGGCAACCAT a score=23138.0 s hg17.chr17_random 2281070 213 + 2618010 TTGCAAGTAAATGTCTT-------------ATGAAATTAAGTAGCAGATATCAAGCTCATGA-------CCTTCAGATTGTTACCCCTAACTCAATCATTTACATAGCAAGTGCAGATAATTTTCATAGTTCCCCATTAAAATTATACTTTACTCCC--CTTACAAATTGTGACT-GTTTTTAAATAAAGTTCACTAACTAAAATTTTGTATATGACATATGATAAATTTCCCTTC s panTro1.chrUn_random 177595951 213 - 240967748 TTGCAAGTAAATGTCTT-------------ATGAAATTAAGTAGCAGATATCAAGCTCATGA-------ACTTCAGATAGTTACCCCTAACTCAATCATTTACATAGCAAGTGCAGATAATTTTCATAGCTCCCTATTAAAATTATATTTGAATGCC--CTTACAAATTGTGACT-GTTTTTAAATAAAGTTGACCAACTAAAATTTTGTATATGACATATGATAAATTCCCCTTC s canFam1.chr25 40316758 228 + 54436876 TTTtaaataaattaattaaataaattaaaaataaaaataaataaaAACTACACACCACATAGGTGGGTCCTTTCACGGATTTTATCAAAATGTAATCATTTGCAGACCAAATGCAGA-----TTAATAGTATTCTATTTAGATTATAGTTTAAAACCTACTCACACAACTTGACTCATTTTTTAACAAAACTAATTA---AAAATAGTTCATATTCCAGTTTAATAAGTTCCTTTC a score=2492.0 s hg17.chr17_random 2281283 34 + 2618010 AAGTCACCTTATATTTACTTAATTGTGTTAGCCA s panTro1.chrUn_random 177596164 34 - 240967748 AAGTCACCTTACATTTACTTAATTTTATTAGGCA a score=11082.0 s hg17.chr17_random 2281317 120 + 2618010 GTGTCTGTCTACCTCCCAACAATAC--TTTGGGATTCTCCCTCCATTTGCACAGGCATCATAGCTGGGGAA-CAGGGATTCAAAAGACCCAG-----GCTGTTCCCTACATATGTTTCCTCCTCAGAC-- s panTro1.chrUn_random 177596198 121 - 240967748 GTGTCTGTCTACCACCCAATAATAC--TTGAGGATTCTCCCTCCATTTGCACAGGCATCATACTTGGGGAAACAGGGATTCACAAGACCCAG-----GCTGTTCCCTACATATGTTTCCTCCTCCGAC-- s canFam1.chr25 40317788 119 + 54436876 GTGTCTGCATGTGTCCCCGAAGTGCTGTCTGGGATT---CCAGCATCTGCACACATGCCA-AGCTGGAGAAGCA------CTGCAGAACCAGAAACAGCTGCCTCTTACATCTTTGTCCTTGTC-GATGC a score=3137.0 s hg17.chr17_random 2281437 65 + 2618010 ATCAGTT--AATCAGT--CAATCAAGTCAAGTGAGAGTGGAGGC--CATGTATTCCCTC---------TTATTCTTGGGC s panTro1.chrUn_random 177596319 65 - 240967748 ATCAGTT--CATCAGT--CAATCAAGTCATGTGAGAGTGGAGGC--CTTGTATTCCCTA---------TTATTCTTGGGC s rn3.chr16 74704318 75 + 90224819 ATCAGTTTGAAACAAT--CTGGCAAGTC---TGAGTAGGGAGGTGGCATCTGTTCTTCAGGTGGCAGGTTATTCTCCATC s canFam1.chr25 40317907 68 + 54436876 ----------AGCAATAACCTCCAAGTCACATGAGACAAGGATG--CATTCACATCCTGCAAGGGGTCTCCCTCCCAGTC a score=44566.0 s hg17.chr17_random 2281502 280 + 2618010 ACTCTCCTCCAAGGAGGAA-AAGGCCAGGAGGTCCTGTTAGAGGATGC--------ACTCTGAGAG-------CCCGGGCTCCCTAAGGTAT--GAGAGTTCTAACCAGCAGGTGTAGACTTTTCAGGAGTGAGGAATGAGGCAGGCA-TTCCAAA--CCTGGAGCTTCATCACCTTTTGTTTCATCTC---AAGACAATTCTGAGGGGCTGTTTTGGAGCGTGTCTGGAAGGTGAACGTTGAAGAAGAGTGTGGGCTTTGATGTGACTCAGATGAGATCTTTCATGGGGAGGCAGGAATTCAA s panTro1.chrUn_random 177596384 280 - 240967748 ACTCTCCTCCAAGGAGGGA-AAGGCCAGGAGGTCCTTTTAGAGGATGC--------ACTCTGAGAG-------CCCGGGCTCCCTAAGGTAT--GAGAGTTCTAACCAGCAGGTGTAGACTTTTCAGGAGTGAGGAATGAGGCAGGCA-TTCCAAA--CCGGTACCTTCATTACCTTTTGTTTCATCTC---AAGACAATTCTGAGGGGCTGTTTTGGAGCGTGTCTGGAAGGTGAACGTTGAAGAAGAGTGTGGGCTTTGATATGACTCAGTTGAGATCTTTCATGGGGAGGCAGGAATTCAA s mm5.chrX 85907458 289 + 160634946 ACTCTCCTCAAAGGAGGGAGGAGGTTGCAATGTTACTTACGAGGG-----------ACCCAGGAAGACGGTCCCCCAGACCTCTTCAGGAAG-AGCGAAATCTTACCAGGAGTTATTTTCTTCTTAGAAATATAGTACGAGGAAGT---TTCCAAGATCTTGGAGCTCCAGCAGTCATTTTTCAGTCTAGTGAAGACCATTCGGAGGGGTTGCACTGGAACGTGGCTAGCCAGTGGATGATGGAACTCAGTGTAAGGCTGAGTGAAATTCAGGAGAGCTGTGTTGTGTGGAGGCTGCTGTTCAA s rn3.chr16 74704393 272 + 90224819 ACTGTCCTCTGAGGAGGAG-GAGACCTGAAGGTCCTCATAGAGGACACT-CAGTTTGACCTGGGATCCTGCTGCCTCCCCTTCCTCAGGGAAGGAAGGGCTCTGGAAAGCAGGTGTTTGCTTCTC---AATGGGAAGTGGTGCGGGCACTGTCAGGAACCTGGAGCTCCAGAAATTATGGCTGTGTTTGGTAAAGATCATTCTGAGGGCTTGGCC---------------------------AGACTCAATACAGGGTCTGGTTGAGACCAGAGCAGCCCTGCCATGTAGCTGTTGTTGGTCAG s canFam1.chr25 40317975 258 + 54436876 ATTCTTCTC-----AGGGG-GACACCAG-AGGTCTTCACAGAGGACACTAAAGGGGACATAGGGAC-----------AGCATCTGGAAAAAC-TGAGGCGTCTGAAATTGAGGTGTATGCTTCTCAGGTGGATGGAATGAG--AGC---TGCTATGAATCTGGAGCTTCATCAATCGCCGTCTACTGTGCTGAAGACCATTCTGAAGGATTGGCCTAGAACATGGCTGGATGGTGAAGAATGAGGACCAGTGCAGGTGGAGACGGCATTCAGATGAAGTCTG---------------------- a score=36841.0 s hg17.chr17_random 2281782 261 + 2618010 TGCCCAGAATCTGGGCTGGTGTCTTTGAGGTCA-GTAGGTTGCCTCTTTGTATCCAAGTCCATTGTTACTAAATTGGAGGCTGGAGATTCTAAATGGCTTCCAGACCATCTCTC---TGATTCTCTTTGGGAGATTGGGTCTGAAAAAGACAATG----TCAGTATTTTTGGGAAATTCTAGAAAGTCTGCTTGGAAACCTGGGAAGACCTCTTGCCTAGTGCCTAAATATTCAATGTGCAGCTCTAGCCATGT------------AGATGCTTGGTAGGT s panTro1.chrUn_random 177596664 259 - 240967748 TGCCCAGAATCTGGGCTGGTGTCTTTGAGGTCA-GTAGGTTGCATCTTTTTATCCAAGTCCGTTGTTACTAGGTTGGAGGCTGGAGATTCTAAATGGCTTCCAGACTGCCTCTC---TGATTCTCTTTGGGAGATGTGGTCTG--AAAGACAATG----TCAGTATTTTTGGGAAATTCTAGAAAGTCTGCTTGGAAACGTGGGAAGAGCTCTTGCCTAGTGCCTAAATGCTCCATTTGCAGCTCTAGCCAAGT------------AGATACTTGGTAGGT s rn3.chr16 74704665 272 + 90224819 TGCTGGGCACCTGGACTGTTATTTTCTTGCTCATTTCACCTGCATCTTTTAGTTCAAGTCTGTTGGCAATGGGAT-AAGACTGAATGTCCAGGGTGCTCTTGGAAGCAGTCCTTGCATGGCTCTCCTCTGGTGCATTGGT-----AGAGTCGATT---CTCTGTTTCTTCAGGGGATTCTGTCTAGGTTGTGTGGGGCACTGGGACATTTCCTCATCTGGGGCCCAGAAGCTGAGTTTTGGGTTCTGTCTATCCTGGTGGATGACAGGATGCTTGCTAGGT s canFam1.chr25 40318233 258 + 54436876 TGCTCAGAACCTCAGCTGCCATCTTCCTGGTCATGTGGGGT-TTTCCTTTGGTCCAAGTCCAGTTGTAATGGATA-GAAAGTGGAGAGTTTGAACAGTGTCCAAATCAGGTCTC---TGAGGCTCTCCTGG----GTGATCTA--GAAGGGAAGGAGTCTCAGTTTATTTGGGGGCTTATGGGGAGTCCAGATGGACATCTGGTCAGATCTTTTGCCTGATACCTTGAGGCTGAGCTTAGAATCCTGGCCCAGT------------GTCCACGCAGCAGGC a score=21968.0 s hg17.chr17_random 2282043 179 + 2618010 -ATAGAGCTGGGTTTTCATTTATATCA----GCAAAACCTATGTCAGA--GTTGAAGAAGTAGTCAAGACAAAGTGTCTTGGTCGCAGGCC-GGGGAACATCTTAAAAGCAAACTTCTAGCCTGATGACTCT-----TGGCAATGAGTGTTGGGTCCTGGCTAAAGTGCCTTGAATGCAGCATGAGGCCAAT s panTro1.chrUn_random 177596923 180 - 240967748 -ATAGAGCCGGGTTTGCATTTATATCA----GCAAAACCTATGTCAGA--GTTGAAGAAGTAGTCAGGAAAAAGTGTATTGGTCACAGGCCGGGGGAACGTCTTAAAAGCAAACTTCTAGCCTGCTGACTCT-----TGGCAATGAGTGTTGGATCCTGGCTAAAGTGCCTTGAATGCAGCATGAGTCCAAT s canFam1.chr25 40318491 191 + 54436876 CATGAGTTCAGGTTTGAGTTTACATCATGACACTAGATTTGTGCCTGATGGATTAGGACATGGCCCAGTCTACATGTTTTAGAGGCAGCCC-AGGGAACATCATGGGAACAGACTTCAGGCCCGTTGTCTGCCAAAGTGATAATGAGGGCAGGGTCTGGGCCACAGTGCCTGGACAGTGTCATTGTGTCAGT a score=3048.0 s hg17.chr17_random 2282222 36 + 2618010 CCATGAATCCAACTTCCAATGGAGAAATGTTAATAT s panTro1.chrUn_random 177597103 36 - 240967748 CCATGAATCCAACTTCTCATGGAGAAATGTTAATAT a score=92622.0 s hg17.chr17_random 2282258 679 + 2618010 TTTTTCAGTTTGAATCAATCAGGGTGAAATTACCTTGCTATTGGTTTGCTTACTTTTTATTATTTCATATAAAATCTAAGACAAAATACATTAAATG-CTTATTG-ATATATGTATTTATTCTT-CACCTGGCTCATAATATTTGCCTAATTTTAAACTTTCTTCTATTTTGTAGGTTTCAACTTATTTCA-TTGTAAGATATTGTTAAATCTAATACGGGCATTGTCACTTTTACAAATAATTTTATTTTATTTCATGT-ATTTCCTATTCACTTTTTACATTTAAATTATGGACCATTTCATCATATAAAAAGCTCCATTTCTATTTTA-AAAATAA--GTCTTTGGGTTTT---TTTGTCTTGTAATTTCCATATTACATAGTAATGAGATAAACGTTAATGTTTTCAGGGtattttaaattttaaataattaCTCATTATATCCACGTGAAATTTGTTTTTACTGCATGTGTGAGTTGGAGAACCGTTTTC-----ACTTCT-GACTCATCTTTACTGTGATCTCCTCAGAACTCATACCTC---TTGTAGTTGGGAGATTGCAGTATATAATTCCAATAAATGGGGCAAATTCAATAATAACATAATACAAATGAGTTTGAAAGCAGGACATGTCTTCAAAGCATACACAACATGGGCCTATATATGTACAACAATAATAATTTATAAGTTACA s panTro1.chrUn_random 177597139 682 - 240967748 TTTTTCTGTTTGAATCAATCAGGGTGAAACTACCATGCTATTGGTTTGCTTACTTTTTATTATTTCATATAAAATCTAAGACAAAATACATTAAATGCCTTATTGAACATATGTATTTATTCTT-CACTGGGCTGATAATATCTGCCTAATTTTAAACTTTCTTCCATTTTGTAGGTTTCAACTTATTTTA-TTGTAAGATATTGTTAAATCTAATACAGGCATTGTCACTTTTACatataattttattttatttcatat-atttCCTATTGGCTTTTTACATTTAAATTATGGACCACTTCATCATATAAAAAGCTTCAATTATATTTAA-ACAGTAA--GTCTTTGGATTTT---TTTGTCTTGTAATTTCCATATTACATAATAATGAGATAAACATTAATGTTTTCAGGGTACTTTAAATTTTAGATAATTACTCATTGTATTCATGTGAAATTTGTTTTTACTGCATGTGTGGGTTGGAGGACTGTTTTC-----ACTTCTGGATTCATCTTTACTCTTATCTCATCAGAGCTCATACCTC---TTGTAGTTGGGGGATTGCAGTTTATAATTCCGATAAATGGGGCAAATTCAATAATAACATAATACAGATGAGTTTGAATGCACAACATGTCTTCAAAGCATACACAACATGGGCCAACATATGTATAACAATAATAATTTATAAGTTACA s canFam1.chr1 107039762 625 + 124897793 TTGTTCAGTTTGATGAACTCATGGTGAAGTCACCATG-----------------TTCAGTTATTTTATATAAAATCTGAGTCAAGATATATT------GTTAATGACCATATGTATTTATTCCTACAGCTGGCTCATATTATATGCCTAATTTAAAATTTTCTTCTATTTTATAAATTTCAAGTTATCCTGCTTATGAGAGGATATTAAAACTAATGTAGATAC--TCATTTTT---TATAG----ATTTTATTTTACATGGTTTCCTATTTGTATTTTACACTGAGATCATGCAGTCTTTCATCaaataaatatatataattttatGTAAGAAAATAAACATTTTTGGGTATTATGTTTGGTTCATGATTTCCCTATTACA-AGTGATGAAATAAA----AATGCTTTTCATGTATTCTG--------------------TTTATCCAAATGGAGTTTG-TCTTATGGCAGGTGTGGGTTAGGAGGCTGCTTTCTTTTTACGTCT-ACTTTATTTCCACCTTGACTTTTCTCTGCCTCGTAGCTCTTATTATAGGAAGGGAATAGCAGTTAATCATCCCAATGAGTGGGGC-AATTCAATGATAGTATATTACAAATCAATTTGAACCCATGACATGGCTTCAAATTATATGAAACAAATGCCCACATATGTACAA--------------AAATTACA a score=10192.0 s hg17.chr17_random 2282937 122 + 2618010 GTTTGGATGGGAATTAAAAGTACAGAAAATTtgttaaaataaattaaaatggagatcacgtctcaataatctctgagcagacgaaattagttaggtctcataagtgatctcaaccttgcttg s panTro1.chrUn_random 177597821 122 - 240967748 GTTTGGATGGAAAGTAAAAGTACAGAAAATTtgttaaaggaaattaaaatggaaatcatgtctcaataatctcagagcagacaaaattagttaggtctcataagtgatctcaaccttgcttg a score=59883.0 s hg17.chr17_random 2283059 703 + 2618010 atttgcaaatacaagcaaaacttaaa-tatttcttgtagctgcctatttaaaaaagagaaatgaagctcaaccaatcaggagtagccaacatccttatataaatagaaactgtccaacaagataaacagacgaacaaaaaacaat-aaaaaagttgtgctaccaccaatcaaatgatttttttgtttctacattttttcaataaatacttgcttcttactctgtcagagaagcactaaataacttttggtctgatattttataatttatcaattgctcttactcaaatagacacttggcaatttcattgtgtctcaaattactttttAGCAGaataaaataaactaggaataaacattacaaaaatgtgtacagaatatg---agaaaaacatagaaagtttatgaaatatatgaatgtagacataagcaaatagacaatttgtatca-tattcttaggcagcaaatctcaatattatc-aacatcaattgtccttaagtttatt-tataaattcaattttgttcctatacagataccattaaat----attggaagta--cacgttact------------------ataaaatattatatagatgaaaacacacataagaatagacaagaaaac--tctgaaaaaaaagcaaaaaacaag-------actggcaagctcTGTGAAAAATCTTGATTGATT-AAAAACTCATATGTCACTGAAACTAAAAATTCAGAAATAGAC s panTro1.chrUn_random 177597943 709 - 240967748 atttgcaaatacaaacaaaacttaaattatttcttgtagctgcatatttaaaaaagagaaatgaagctcaaccaatcagaagtagccaacaaccttatataaatagaaactgtccaacaaggtaaacagacaaacacaaaacaataaaaaaagttgtgctaccaccaatcaaatgatttctttgtttctacatttttcaaataaatacttgcttctcacactgtcaatgaagcactcaatatctttccatctgatattttataatttatcaattgctcttactcaaataaacactttgcaatttcattgtgtctcaaattactttttagcag-----aataaactaggaataaatattacaaaaatgtctacggaatatg---gaaaaaacatagaaagtttatgaaatatatgaatgtagacataagcaaatagacaatttgtatca-tattcttaggcagaaaaactcaatattatc-aacatcaattgtccttaaagttatt-tataaattcaattttgttcctatacaggtaacattaaat----attgcaagta--cacgttact------------------ataaaatattatatagatgaaaacgcaaacaagaatagacaagaaaac-ttctgaaaaaaaaaaaaaaaaaaaaaaaaaaCACTGGCAAGCCCTGTGTAAAATCTTGATTGATTAAAAAACTCATGGATCACTGAAACTAAAAATTCAGAAATAAAC s canFam1.chr1 107040387 467 + 124897793 ATTTGCAAGT-----------------TATATTTGGGGGTTG-------------GGG--------------------------------------ATATAGTTACAAAAGGATCAGaaaaataaa-------------------------------------------------attttattttatttatttttttttagaaaa-------------------------------------------------------ataa------aatt--------ttaaataattac---------------------------------aacaaaataaaat-atctgagaataaatccaataaaaatg--tatcaaatgtgtataagaaaccatgtaaaatttctgaaatatatgaaaatagacaaaaata-------aaatcacatcactgttcttgggtaggaaaattccatattatcaaacatcaa---tccctaagctaattatataaatttaatttggtcctgatacagataccaTCAGTTACTCATTGGAGCTAGGCATGTTATTGCaaaaaaaaaaaaaaaaaaaaaaaaTCTTACAGATGAAAATACAAATAAGGATAGGCAAAAAAAAAATCTGAAAAAAaatgagga-----------------------------taaagttttagttaggc-aaga-------------tgaa---taaaatccagagctatac a score=26568.0 s hg17.chr17_random 2283762 305 + 2618010 CAAAGTGCCTAAGAAAGtgtcatagtgcatccaggctgctataacaaaatacctcagactgggtaaaggataaacaacagaaatgtatttttcacagttatggagtctggaaagtgcaagatcaaggcagcagaaaatttagtatatgttgagagccctgttccccatagatggtaccatcttgcacacgggacaagggcattgccttcaacttcccttgaaagagcactgattccattcatgaagatgaagaactcttggcctcaccacttccccaaaggccacacgcctaaaattatccacat s panTro1.chrUn_random 177598652 305 - 240967748 CAAAGTGCCTAAGAAAGtgtcatagtgcatcttggctgttataacaaaataccttagactgggtaaaggataaataagagaaatgtatttttcacagttatggagtctggaaagtgcaagatcaaggcagcagcaaatttagtatatggtgagagccctattccccatagatggtaccatctcgcacacgggacaagggcattccctttaacttcctttgaaagagcactgattccattcatgaagatgaagaactcttggcttcaccactttcccaaaggccacacgcctaaaattatccacat a score=28411.0 s hg17.chr17_random 2284067 197 + 2618010 aggaatttgcaaagggacataaacattcaggccatCACAACAAAAACTACATGGGGGATGGCATCATTAATACTTGAGGTGTAAAAATGTGATGTTCTTATCGCAAAGGAAATAAATGATTTATTCTTCATGGCATATAACAAAATAAAGGTCCAAAGAAAATATTTTTTATGAAGATAAATCTATATGGTAAAAAA s panTro1.chrUn_random 177598957 197 - 240967748 aggaatttgaaaggggacataaacattcaggccatagcaATAAAAAGTACATGGGTGATGGCATCATTTATACATGAGGTGTAAAAATGTGATGTTCTTATCACAAAGGAAATAAATGATTTATTCTTCATGGCATATATCAAAATAAAGGTCCAATGAAAATATTTTTTATAAAGATAAATCTATATGGCAAAAAA s canFam1.chr1 107041037 165 + 124897793 AAGTATTTGAGAAAGTTAATAA--------------GCAATAAA----ATATGGGGGATGACATTATTAATACTTAGGGTTTGGGAACTTGATATTACCATCACAAAGTAAGAAATTGATTTACTCTTCACATCCTATAACAAGGTAAAGATTCAATGAGAA--------------ATACAACCATATGGCAAAAAA a score=8695.0 s hg17.chr17_random 2284264 113 + 2618010 CTAAGTGT-TGATAAGGTTAACCCTACAGGTTGCATCAGGATTTTCAAGGTTTCTGGTGATGAGCAAGGCCCCAGAGTTTCCTCCTGTGACATTTACCTGGAAGTTGCTCATGC s panTro1.chrUn_random 177599154 114 - 240967748 TTAAGTGTCTGATAAGTTTAACCCTACAGGTTGCATCAGGATTTTCAAGGTTTCCAGGGATGAGCAAGGCCCTGGACTTTCCTCCTGTGACATTTTCCTGGAAATTGCTCATGC a score=95323.0 s hg17.chr17_random 2284377 964 + 2618010 TGTTATTCAATTTGAAAGTAGATAATATTGTTTGTTTCTGTTCCAATATTTACT-------AAATTCAAAATAATATAGGGCTCTTTATGCGTAATTGTCAAACAGTCATTCAGTCAATGGTCCTCTGCTGAGGAAGAGCACAGATACATCCAAACACATATGATG-----TTCCTCAAATAGAGGACTTCTCCCTGTG--CGGGAGTCACCTATGTTGCACTTGATCAGA-GGCTTTCCCAGGCGAGCATTTCTCTGCAGCCCTACCAC--------AGACTTAACCCTGGAAATCTGACTCAGAAGGTGATA-GATGAACACCCAACCTAGCATTCTAATCTAATGG----ATCCT-----CTCTTAATAATCCCTTCCAGGGA----------------TCTGGGAGCTTTCCTGGATTCGTCTGCCACACACAGCT-AGGCT-----AAAACATTTGGATAGAAGCTTTGATCCTCACTGGCCCTCCTGCCCTGTTCTACCAGCTTCTCTAGAAGTATGCTTCTCTAATTGATCCTGAGAGAC-CCATCTAAGGCTATCTCTCTGTGCCAATATAATTGATCTCATAAAGTGGGAAGAGAAAC-----AGGCAAGAGTCCAGCTATGCTAGAAGCTGTGTCTAGGGTTCC-TTATCTGCTTTATGTCTCTGATTTACCTAAATATTGACAAATACAGATTAATCTCTAGGTAGT-----AGAAAAACAGAAGGAGAAATCGCAGTTCACAGA-AGAAGAAGAAAATGCAATCAGTAATTCCTAGAGTCCCGCTTAAGCTCAGCCACAGGGTACTAAGTCTCTTCAGGAAAAAGCAATGGTTGTCCATCATCTG--------AAAAACTGTG-GCGTTGAACCATGGGCACCGAGAGTGCACACTGCCCACTAGAGTTCCATGCCTACATCACAGAGAGATAGAATAGTCTCAAAGGATTCTTAA----GAGTAACGTGGAGACCAAAAGGAGCTGAATCCACAGCCTCTGTCTTACCGTCT-GTT----CTAATAGTATTTCCAGA s panTro1.chrUn_random 177599268 974 - 240967748 TGTTATTCAATTTGAAAGTAGATAATATTGTTTGTTTCTCTTCCAATATTTACT-------AAATTCAAAATAATATAGGGCTCTTTACTCATAATTCTCAAACAATCATTCAGTCAGTGGGGCTCTGCTGAGGAAGAGCACAGACACATCCACACACGTATAATG-----TTCCTCAAATAGAGGACTTCTCCTTGTG--CTGGAGCCACCTATGTTGCACTCGATCAGAGGGCTTTCCCAGGATAGCATTTCTCTGCAGCCCTACCAC--------AGACTTAACCCTGAAAATCCCACTCAGAAGGCGACG-GATGTACACCCACCCTAGCATTCTAATCTAATGG----ATCCT-----CTCTTAACAATCCCTTCCAGGGA----------------TCTGGGATCTTTCCTGGATTCGTCGGCCACACACAGCTAAGGCTCA---AAAATTTTTGGACAGAAACTTTGATCCTCATTGGCCGTCCTGCCCTGTCCTACCAGCTTCTCTAGAAGTATGCTTCTCTAATTGCTCCTGAGAGACACTATCTAAGGGTATCAACCTGTGCCAATATAATTGATCTCATAAAGTGAGAAGGGAAAT-----AGGCAAGAGTCCAGCTAGCCTAGAAGCAGTGTCTAGGGTTCC-TTACCTGATTTATGTCTCTGATTTACCTAAATATTGACAAATACAGATTCACCTCTA---AGTCACGCAGAAAAACAGAAGGAGAAATCCCAGTTCATAGA-GGAAGAAGAAAATGCAATCAATGCTGTCTAGAGTCCTGCTTAAGCTCAGCCACAGGGTACTAAGTCTCTTCAGGAAAAAGCAATTGTTGTCCATCATCTG--------AAAAACTGTG-GCCTGGAACTATGGGCACCGAGAGTGCACACTGCCCACTAGAGTTCCATGCCTACATCACGGAGAGATAGAATAGTCTCAAGGGATTCTTAA----GAGTAATGTGGGGGCCAAAAGGAGATGAATCCACAGCCTCTGCCTTACCGTCT-GATCTAACTAATA-TATTTCCAGA s canFam1.chr7 33823337 970 - 83037113 TGTTATTT--TTTAAAAGAAGGTAAAAGAATT--------TTCTATCATGTATTTTAAAAAACACTCAAAAAGA---AGGGCTTCCTTTTTGTGATCTTCTAAATATTTCCCAGTCAATAGCCCTCTACTGAGGACAGGTACAAA-ATCTCTGACCTTAGATGATGTATGATTTATTAGATACGATTCTTCTCCTTGAGACCAGAGCTCAGCTTTA--GCATCTGATGAAA-GGCTTTCAGAGGTTCATACTCACTTTAAGAATCATTTCTAAGATGAAGAATGAGCCAGAGACATGAGGTATGGAAAGAGGAATGATGAACTGTTATGGTGTGACTCTGTTCCCCTAGACATATCCTACACCCTCTTAATAATCCATTCCAAGGACAGAGAATCATAATATTTTAGATTTTATCCTGGAGTTCTCTACCACCCCCAGAC-AGATGTATTTGTGAACTTTGGATAGAA----TAATCTTCCCTGATCACTCTGCTCT--------------TTTAAAAGGAAAATGTTCTCATGTTTCTTGAGAGAGGCCATCTCAGA-TATCTGCTTATGTAAACATAATTGATTTGGTAAAGTGGGAAGAGTAATAAGGAAAGCATGAGTCCCTCCACACTAAGCACTGAATTTAGGGTTCCTTTACTCTGTTTCTGCCTATTTTTTCCACAAAT------------GGATTCATCTGTAGGGAGT---ATAGAAAAATA-----AGGAATTTC--CTCATAGATACAAAAGGAATATATTAGTTAAGATGACTCAAG---AATTTGAGTT------TGGGGCACTGTGGCTGTTCAGGAGATAGAAATCTGTCTCCAACTTTTGCTCCCTCTAGCAGCAATGAACATTGAACTATGAACC-------TGTATGTTCCAACCTAGAGGTCCAGGCCTCTGTCACAGAGCCAAGGGATGATCACAAATGACTCTCAAACATGAAAGATGGGACAGGAAATAGAAAATGAACTTCTAACCCCT-CCTCACTGCCTAGAT----CCAATAGTACATCCTGA a score=478698.0 s hg17.chr17_random 2285341 6124 + 2618010 CTCTTTTGTGGGCTGCACCAGGGGTTATTCAGAAAGAAAAAAAGTTGTTAATGTCCCACCATTCCCCGTAGCTTCCGAGGTCTAAGTTGTTCATttcccacgttccaggttgttgttctccctctatctccacagaatcagtgtgtctcattccgatatctataatctcacctttattctagtcgccctttacttttttctagacattttgtgtagtagagccaggtaaaacagatacaagaatatttacataaaacttaaccagaaCTAAGTTGGAGTCCCATAACTGCTGCTAGGCTGGGATGCAACTCAGAGG-ATACAAAAGCCA-GGCTGGTCTAGAATTGCAGGTATGGGAAAGAAAG---ACA-TTTCACCCAGGAATTATTAGCACGAAATT--CCAAATTTGTGAAATAGATTCCT-AGATCCCCCAAACATTTCATCCTTATCTTGGAGGCAATCTGGAAGAGATAATCCCCTTTCAGAGAAAAGCATACCTAATCAACGAATTATCTAACCAACATGTGTGGAAAAGGAGGGAACATCGTAGAGTTGGCCCATTTTAGT-CGATGTGGTGAAAAATGCCACGAAGTCAGAGCTCAATTG-GCCTCAAAAGCCTAAAAGGTGGCACAGATTAGCTTCAAGGGACACATGGTATGGCTGGAGTCAG-ATGACTGTTATGCTGAAGAAGTCAACAGTGGTGACTGATATCTCAAGAAGTGGGCTAAAAGTCCACTTCTGGTTACTCTGCTAGGTATGGTCTAGGAATTCTTCAACCATGAGACAGATAGGTCAACTTTCACCAGCAACCCCAAGTCTGGTTTGCAGTATTAGACTCTGGGTTGGACACAGATTTaggttcaatctgcagcttgattgtggtcactctctggaaaaca----cttaccatggacttctagatgagtgacccagttagatcagcatctggggttgtttccggtttgcagcccaaaagaTATTCAGACAGTCTACACTTTCCATTGTAGATAACCAAACAGATAGAATATGTGCCATTATCCCAAACCCtgagttctgacctttgagaggagcaaccactcatgtcaggttctgtatggctggcacaggttaaacagccacagcggcccagtggacatcatgaggtttcaccttccctgactcatctatgaaccaggaccagtcatataggaaacactcagtaaattgggggccccacagagacagcagctttgcttcagaggatagaaggaggcacaaaatttcAACCAgctggggatgccctagccctctataggtcaaacttagtttgtcaggagttctgtagcaagctcttagctgactttcaaatcagtgtaaccagtagtagtgtcaagatagctctgagtccaaaaggccaaagaacacctctaggtggaagctaatcctttactggaggctccaaattttaaaatcaAGATTTTCTTGACCTCAGGATGAACTGATCAATGCAAATCTCCCCAAATATTTTCACTAATCCTTAATTGGAAAGTAAGACTCCAGATTTTTTAACCTTCACTAAAAATAAATATCTGATTTTTTTTCACCTGGGATCTAtgtatgtgtgttggagcatgcttttactaatcagcataaagttacaactctccttgtgcctctattttctacttgtgcagagtttaaagtacacaggtgacagcttagggttttctgggtcttttgctaagcatgtacctgaccctgagcatccccatttccccatttctttgttgatctcaaagaccattatcacagtcctaattcccaggagcttttcctcctagagctttttggcatgattattcttagacccaactgatatccTTTGTTCCTGGTGAACTG-GTAGCTTATTTCCATTTAAATGCTTTTACAAACATTAAGCTATTGATTTAAGATTTCTGTGCTTTTT-AAATTAAGTAATGCTACTGTTAGCTTTCCACAGCAATTCAGGGTTAT---aaaaaagggaagaaaataattattttataccaatagtaggaaaaagagactggggatgactatattaatagcagacaaaatagacttaaaaagttacaagagacaataagacattatataatcatagaacgtgcatttggcaagaagatagaaatagtttaaacacttacatacctaataataaaacatttagatatagaaagactaagttgacagaattaaagggacaaatagacagttctaaaataatagttgaagatgttaatactccactctgagtaatgaatagaaaaatgagatgaatgacaaattaggaaatagaggacttgactaactcaatgaactaaattgatctaacagatatatacaatatactccatccaacaaaacagagtacacactcttctcaaatgcacatggggaattctccaggatgggctgtatagtagatctcaaattaaatcaataacagatgaaatgctagaaagtttacaaaattgtataaattaaacaac-tacacaattacaacttaaagaattacaaaattgtataaattaagtaaaggaagaaatcacggaagaagtaggaaca----tacagaggaagaaaaatgaaaacaaaacatatcaaaagttatgggaaacagcaaaaacagtgttaagatgaaaagtttgcagctaagatacatttaaaaagagcaaagatttcaaataaataataactttatcacctagtaaattagaaaaataacaccaaattagatgcaaagcaaagagaaagaagaaagtattgaagattttagcagagataaatgcaatagagattacacaaacaacagaattccaaaaaaccaaaagttcactctcagttcttc-aaaaaattaacaattggcaaaacttcagctacacacacgaaaaattaacagcatattcacatactaaaatgagtaatgaaagtgggacattactactaattcaaagaaataaaatg-tttaaaaaagtgtactgtgaactatgataggatgataaattggaaaacctagataaagtgggcagattcctacttatgcaagacttgattacaaagaaatacaaaatctgaatagatagaaaactactaaggaaatggaatcagtaattaaaaacctc-tcatgaagaaaagcccttgttttgttggcttcactggtgatgtagatcaagcatttatagaacaaaaatcctttccaaaatctaccaaaatcctgaagagagcagttccaaacttattccatgatgccagcattagctcataccaaagccagacaaagagactacaaaaacccatagactaatatcccttatgaacacggatgcaaaactactcagcaacatcctagctaaccacattcagcagcatactagcaagattacaccccatgaccaaggggaatttattactggaatgtaaggaagatttagcgtatggctggtttcagtgcaatggtgtttacaactaattgatcacaaccagaatagatttctttattctttttccagtctcactggttcacttagctagcctttcttaacaaaagttttagcatatgaaaaat-aatcaatgcatatgacaca-ttaacaaaatttttagaaaacattatctcattaatacaga--aaatgtattttacaaaattcaaaatattttataataaaaacaataaattacgaataaaagaaaaccatctttgtaaaattcacgtataaaaacccacagcaaactacatgttctagaggaaaagaccaaaattatttcgtctaagctcagaagaca----gaatgtctgctcttgccagccacttttattcaacactgtattagaagtttcattcagagaaattaaaaaagacaatgaaataaacttcatcaaagtgtgtacagaaaatatattcttttatgtagaaaatcttaaagattccacacaaaaaatattaaaattaataaattcagcagagtagtagcatacaaaatcaacatagaaaaataaactgtattttatgtagtaatacgaataatctgagaagaaaattatgaaaacaactcaatttacaatagcatcaaaagaataa---aattaggaaGTAACCAAGaagcaaaatgccaatta-ttttgtgtagatattaaaaaatcaatttttaagtttatgaggaatctcaagggaccctaaattgcaaaaataattttgaaaaaaaaataccaaagttagagaagtcacacttaatgatttcaaaacttactac-aaaattccaaaatagcatgctacaaatagactaatggagtaatatagaaagccaatataaataaaccctcatatatatggtcaaatgatttttatgggaaatgaactgcctttacaacagttagtgctggggaaattgggtacctacatgtaaaagagtgaaactgttcccttaacttataccataagaaaaaattaactaactcga-caaaaacctaaatgtaagagctaaaactacaaaattcttagtataaaatgtaggtaaaacatgtcataacgctggatttcgcagtgattttttttaacaggacacaaaaaatgcaagaaacaaaagaaaa----ataaagaggactctatccagaatatacaaagaacaattcagcaataataaaacaaaatacttgtttaaaatatgggcaaaatacttaaacagacatttctttaaaaattatgtgaaatggctaataagtccatgaaaaggtgctcaacaaaac---------taatcattagtaaaatgcaaatataa-ctccaaatgatatatcacttaatacacatcagcatagttactaccaaaagaaacaaaacaaaacagaaaatcacaagtgttggtgaggacgtggagcaattagaacccttgtacactgttgttggaaatgtaaaatgttgcagctgctataaaataacagtataataactaaaaaatgtacaccaaaagtcaccatatgatcccacaatttcacatctgggtatgtagcaaaagatgtgaaagcaaag-acacaaaataatacacgtacacctaggctcatggcagcattactcacatcacccaaaaggtttgtgaattacccgtgttgtttgaattatcatcaatgaataaataaataaaatgtgatttatacatatattggaacgttattcagttatgtaaaataagaaaattctgacacatggtacgttatgcatgaaccttaaggacattgtgcaaagtgacataagccagtcataaaaggacaaatactgtatcattccacttatgagatacttagagtagtt-aaattctagaaatccaagtagaagagtggttcctaggagctggagggggagtaacagggagctgttatttaatgtgcattaaattttggttttggaagttgaaagaaggtccctatgaatgagaataatagttgcaaaacaatgtgagtgtagttaatttttctgagctgcacacttaaaatagctaaaatggttaattttatgtatactttgccacaatataaaaaaTATTTTTTAaataaacaaactatagctatctgcaataggatgaattaatatcataaatataaagttgcatagaagaaagtagatgtaaaagtatacatgttgtacaatttcacttatataaaatccagaaaGTGAACACAACTGAGGTTCTGGCTTCCAGTAATAATGAAGTAGAGTAGATTGTTCAATAACTGTTTCACATAT-ACTATAATAAAGTTTAATAAAATACTATATTTTGCTATATAGAAACGCACACTGTTTAGaagaactgaatgaagattttagtat---tgccactgtagaagagataaggattggggtttgcatctattcaaattaactccctcataaaataataattttcaaagaaatacaacagaagccagagtccctgtaattcctatcacacaatttaaaaatttatgagatgcgtgaagaaggatgaaaatgtaatcgattcacaagataaaaagcagacaatagaacctattctcaagatgtgcaagatgctgtaatcggtaggtaagatttgaaagaagctatggtaagtatgttcatggggttaaaggaaaacagtctcatgacaagtgaacag-atGTGTAACTGTGCAC s panTro1.chrUn_random 177600242 6122 - 240967748 CCTTTCTGTGGGCTGCACCAGGGGTTGTTCAGAAAGAAAAAAAGTTGTTAATGTCCCACCGTTTCCCGTAGCTTCCGAGGTCTGTGTTGTTCATAccccaggttccag---gttgttctcccactacttccacagaatcagtgtgtctcattccggtacctataatctcatctttattctagtcgccctctacttttttctagacactttatctactagagccaggtaaaatagagacaagaatatttacataaaaCTTAGCTGGAACTAAGTTGGAGTCCCATAACTGCTACTAGGCTGAGATGCAACTCAGAGGAATACAAAAGCCAGGGCTTGCCTAGAATTGCAGTTATGGGAAAGAAAAGTCACACTTCCACCCAGGAATTATTAGCACGAAATTTCCCAAGTTTGTGAAATAGATTCCTAAGATCCCCCAAACATTTCATCCTTATCTTGGAGGCAATCAGGAAGAGAAAAT-------------AAACCATACCTAATCAACAAATTATCTAACCAACATGTGTGGAAAAGGAGGGAACATCATAGAGTTGGCTTGTTTTAGTACG-TGTGGTGAAAAATGCCACGAAGTCAGAGCTCAGTTGAGTCTCAAAAGCCTAAAAGATGGCACAGATTAGCTTCAAGGGACACATGGTATGGATGGAGTCGGCAT-ACTGTTATGCTGAAGATGTCAAGAGTGGTGACTGATATCTCAAGAAGTGGGCCAAAAGTCCACTTCTGGTTATTCTGCTAGGTATGGTGTAGGAATTTTTCAACTATGAGacaaataggccaactttcaccagcaaccccaagtctggcttgcagtattagactctgcgttagacacaGATTTaggttcaatctgcagcttgattgttgtcactctctagaaaacaaacccttaccatggacttctagatgagtgatccagttagatcagcatctgatattgtttccggtttgcaacccaaaagaCATTCAGACAGTCTACAGTTTCCATTGTAGATAACCAAACAGATAGAATATGTGCAATTACCACAAACCCtgagttctgacctttgagaggagcaaccactcatttcaggttctgtatgactggcacagattaaacagccacagcggcacagtggacatcatgaggtttcaccttccctgactcatctatgaaccaggaccagtcatataggaaatgctcagtaaattgggggccccacagagacagcagctttgcttcagaggatagaaggaggcatgaaatctcTAGCAgttggggatgctctagccctctatgggtgaaactgagtttggcaggagttctgcagcaagctcttagctgactttcaaatcagtgtaaccagtagt-gtgtca--------ctgagtccaaaagcccaaagaacacctctgggaggaggctagtcctttactggaggctccaaatgccaaaatcaAGATTTTCTTGACCTCAGGATGAATTGATCAATGCAAATCTCCCCAAATATTTTCACTAAACCTTAATTGGAAAGTAAGACTCCAGATTTTTTAACTCTCACTAAACATAAATATCTGA--TTTTCTCACCTGAAATCTAtgtatgtgtgttggagcatgcctttaccaatcagcataaagttacaactctccttgtgcctctactttctacttgtgcagagtttaaaatgcagaggtgagcgcttagggttttctgggtcttttgctaagcatgtacctgatcctgagcatccccaattccccatttccttcttgatcccaaagaccgttatcacagtcctaattcccagcagcttttcctcctggagctttttgacatgattattcttagagccaactgatatcctttgttcctggtagactgcgtagctcatttccatttaaatgcttttacaaatATTAAACTATTGATTTAAGATTTATCTGTTTTTTAAAATTAAGTAATGCTGCTCTTAGCCTTCCACAGGACTTGAGGGTTATAAaaaaaaaaggaagaaaataattattttataccaatagtatgaaaaagagactgggaatgactacgttaatagcagacaaaatagacttaaaaacttaaaagagacaataagacattatatagtcatagattgtccatttggcaggaagatagaaatagtttaaac----ccatacctaataataaaacatttagatatagaaagcataagttgacagaattaaaggggcaaaaaggcggttctaaaataatagttgaagatgttaatactccactctgagtaatgaatagaaaaatgagatagatgataaattaggaaatagaggacttgactaactcaatgaaccaaattgatctaacagatatatacaatatactccatccaacaaaagagactatacacttttctcaaatgcacatggggaattccccacgatgggctgtatagtagatctcaaattaaatcaataacagaagaaacgttagaaagtttacaaaactgtataaattaaacaacatac---------ccttaaaca---acaaa-----------taagtaaaagaagaaatcacagaggaagtaggaacatacttacagaggaagaaaaatgaaaacaaaacacatcaaaagttaagggaaacagcaaaaagagtgctaagatgtaaagtttgcagctaaaatacgtttaaaaagaacaaagatttcaaataaataataactttatcacctagtaaattagaaaaataacaccaaattagatgcaaagcaaagacaaagaagaaaatattaaagcttttagcagagataaatgcaatggagattatacaaaccacagaattccaaaaaaacaaaagttcattctcacttcttcaaaaaaattaacaattggcaaactttcagctacatgcaaaaaaaattaacagcatattcacatactaaaatgagaaatgaaagtgggacattactactaattcaaagaattaaaatattttaaaaaagtgtactgtgaactatgataggatgataaattggaaaacctagataaagtgggcagattcctaggtatacaagacttgattacaaagaaatacaaaatctgaatagatacaaaactactaaggaaatggaatcagtaattaaaagcctcttcataaagaaaagcccttattttgttggcttcactagtgatttagatcaagcatttatagaacaaaaatcctttccaaagtccaccaaaagcctgaagagagcagttccaaacttattccatgaagccaccattagctcataccgaagccagacagagatactacaaaaacccatagactaatatgccttatgaacacggatgcaaaactagtcagcaacatcctagctaactacattcagcagcatactagcaagattacaacccatgaccaaggggagtttattattggaatgaaaggaagtttcagcatatgggtggtttcagtgcagtggtgtttacaaataattgatcacaaccagtatagatttctttattctttttccagtctcactggttcacttagctagcctttcttaacaaaagtttaagcatatgaaaattaaatcaatgcatattccacatttgtcaaaatttttaaaaagtattctctcattaatacaggataaacgtattttacaaaattcaaaatattttataataaaaacaataaattaggaataaaaggaaaccagcattgtaaaattcacatataaaaacccacagcaaacaacatattccagaggaatagatcaaaagtatttcctctaagctcagaagacagagtgaatatctgctcttgccagccacttttattcaacactgtattagaagtttcattcagagaaattaaaaaagacaatgaaataaactgcatcaaagtgtgtacagaaaatatattcttatatttggaaaatctttaagattccacacaaaaaatattacaactaataaattcagctgagtagtagcatacataatcaacacacaaaaacaaactgcattttatgtagtaacatgaataatctgagaagaaaactctgaaaacaattcaatttacaatagtatcaaaagaataaagtagttaagaaGTAACCAAGAAGTaaaatgccaattacttttgtgtagatattaaaaaatcaatttttaagtttatggggaatctcaaagatctttaaattgcaaaaataattttgaaaaaaaaataccaaagttagagaagtcacacttaatgatttcaagacttactacaaaaattccaaaatagcatgctacaaagagactaatggagtaatatagaaagcccatataaataaaccctcatatataaggtcaaatgatttttatgggaaatgaactgcctttacaacaattagtgctggggaaattgggtgcccacatgtaaaagagtgaagctgggcccttaacttctactataagaaaaaattaactaactggatcaaagacctaaatgtaagagctaaaactacaaaattcttagtataaaatgtaggtaaaacatgacataaggctggatttggcagtgattttttttaacaggacaccaaaaacgcaagaaacaaaagaaaaatagataaagaggactctatccagaatatacaaagaacagttcagcaataataaaacaaactacttgtttaaaatatgggcaaaatacctaaatagatatttctctaaaaattatgtgaagtggcttataagcccatgaaaaggtactcaacaaaaccttttcattt--tcattagtaaaatgaaaatctaagccccaaatgacatatcacttaatacacatcagcataactagtaccaaaag----aaaaaaaaacagaaaatcacaagtgttggtgaggaagtggagcagttagaacccttgtacactgttggtggaaatgtaaaatgctgcagctgctataaaacaacaccatagtaacgaaataatttacactcaaaatcaccatatgatccagcaatttcacatcttggtacgtagcaaaagatgtgaaagcaaagaacacaaaataatacacgtaaacctaggctcatagcagcattactcacatcacccaaaaggtttttgaattacccgtgttgtttgaattatcatcaatgaataaatagataaaatgtgatttatacatacagtgggatattattcagttatgaaaaataaggaaattttgacacatgatacgtcatgcatgaaccttaaggacattgtgcaaagtgacatgagccagtcataaaaggacaaatactgtatcattccacttatgagatacttagagtagttaaaattctggaaacccacgtagaagagtggttcctaggaactggcgggggagtaacagggagctgttatttaacgtgtatagaattttgg-tttggaagctgaaaaaagatccctatgaatgggaataatagttgcaaaacaatgtgagcgtagttaatttctctgagctgcacacttaaaatagttaaaatggttaattttatgtatactttgccacaatgtaaaaaaTATTTTTTAAATAAACAAACTATAGCTATCTGCAATAGCAAGAATTAATATCATAAATATAAAGTTGCCTAGAAGAAAGTAGATGTAAAAGTATACATATTATGTAATTTCACTTGCATAAAATCCAAAAAGTGAACACAACTGAGGTTCTGGCTTCCAGTAATAATGAAGTAGACTAGTTCGTTGAATAACTATTTCACAGATAACAATAATAAAGCTTAAAAAAATACTATATTTTGCTATATAGAGAGGCAGACTGTTTagaagaactgaatgaagattt---tatctatgccactgtggaatagataaggattggggtttgaatctattcaaattaactccctcttaaaataataattttcaaagaaatacaacacaatccagagtccctgtagttcctatcacacaatttaaaaaatcatgagatgcgtgaagacgcatgaaagtgtaatcgattcacaagataaaaagcagacaatagaacctattctcaagatgtgcaagatgctgtaatcagtagataagatttgaaagaagctattgtaagtactttcatgggggtaaaggaaaacagtctcatgataagtgaacagaaagtgtaaCTGTACAC a score=47096.0 s hg17.chr17_random 2291465 584 + 2618010 TCCCAGTCCTTTGGTCACAGGGCTGCAGGACtaaggaaggaaattaaagaaaaatgaaattaaaaggaaagagaaataagttt--tcttgtattaggctgatttgtcccagaggcagcaataggcacagcccagacccaggaaaattcttgataatattatgtaatgtgctctggaggttctcccaacactcccccaacacagggaaaagaaaaacaaattccctttgttttatggaatgagtttatagattcttgttctctgtaactagtgacttcaagtattgtgttttatcgaagaagtacaatgaaagtcatgagaagcctgagtaggctgaactacagctgtttgggcaccatagtgagggttataggataagcccatgcccagggaaacctagataatggacatgtgggttgcttggcaacggtcatgtgcaatcctgtctttgtcctgcctctgtattcctgctttcacgccactgtaagctcgcttcaagctagcccacccccttttgtgaagtgtgtataaaagtcaggtgttgt-ctgtgttccgggcccggtctttttgacgtgagtcagctggtc s panTro1.chrUn_random 177606823 585 - 240967748 TCCCAGTCTTTTGGTCACAGGGCTGTGGGACtgaggagggaaattaaagaaaaataaaatttaaaagaaagagaaataaatttagtcttgtattgggctgacttgtcccagaggcatcaacaggcacagcccagaaccaggaaaagtcttgataatattatctaatgtgctctggagtctctcccaattttcccccaacatacggaaaagaaaaacaaatttccttttttttacggaatgagtttatagattattgttctctgtaaccagtgacttcaagtattctgttttatctaagaagtacgatgtaagtcatgagaagcctgagtaggctgaactacagctgtttggtcaccatagtgagggttataggataagcccatgcccagggaaacctagaaaatggacgtgtgggttgcttggcaacggtcatgtgcaatcctgtc--tgtcctgcctctgtatccctgctttcacgccactgtaagcttgcttcaagctagcccacctccttttgtgaagtgtgtataaaagtcaggtgttgtcctttgttccgggcccagtctttttgacgtgagttagcttgtc a score=90675.0 s hg17.chr17_random 2292049 1205 + 2618010 ctgagtgcactcaataaagattctcctgtttcaacctgaggtctgtctcgtcctcctgaatcccgcaacaGGAGAATTCCAGTATGCACCATGTTCAGGGAACAGTGCGCG-TCACTGAAGGAAAAGTGGGGCGGGAGGGGGTGGTGCATGGCTGTGAGAGCCTCTTGGGCTTGCTGGGAGATGTAGTCTTATAAAG-ACTCCCAGCCCCTTTGTCACAGGGCTGCAGCACCACAATCCCAGCATACAACGGAATCAGGGACAGTGCGCGTCGCTAGAAGAAGAGGTAGAGCTGTGCATAACTCGCTGGGCTTGCTGGAAAATGTAATCTCATGAACACTCCTTAGTGAACAGTGAGCGTCACTGGAGGAAAAGGCGGGGCTGTGCAGGCCTTGCTTTAGTTGCTGAGA-GATGCGGTCTCATAAACACTCCCAGCCCTTTGGTCACAGGGCTGAAGGACTACATTTCCATCATGCACCGGGATCAGGGATAGTGCGTGTGCCTGGATGAAGAGGCAAAGCTTTGTGTGCCTCCTTTGGCTTGCTGGGAGATGTAGTTTCATAAAGTCACC-AGACCTTTCATTACAGGGCCGCAGAACTACAATCCCAGTATGCACCAAGATCAAGGATAGTGCGCGTTACTGGAGGATGAGGAGGGATTGTACACGTCTCGCTGGGCTTGGT--GGGATATGTATTCTCATAAATACTCCCAAACCTTTGGTCACAGGGCTGCAGGACTACACTCCCAGC---------------------------------------------------------------CAGCACCGGGTTCAAGGAAATTGCGCGTCACTGGAGGAAGAGGCGGGGTTGTTTGTTACTCGCTGGGCTTGCTGGGAGATGTATTCTCATAAATCCTCGCAGCCCTATCGTCACAGGGCTGAAGGACTACACTTCCAGCCCCAGCATGCACTGGGCTCAGGGACAGCACACGTCACTGGAGGAAGAGGGAGGGCTGTGCGCTTCTCACTCTGCTTTTTTGGGAGATGTAGTCTCATTAACACT-CCTAGCCCTTTGGTCATAGATCG--CCAAGGACTGCAATCCCAGCATGCACCCAGCTCAGGGACAGTGCGCTAGTCACTGCAGGAAGAGGCAGGGCTGTGTGCACCTCCTGGGAGTACTGGGAGATGTATTCTCATAAACACTCCCAGCTCTTTGCTCACAGGGCTGCAGGAATACATTCCTAGTATGCACCCAGCTCAGTGACAGTGCGCTAGTCTA s panTro1.chrUn_random 177607817 1272 - 240967748 ctgagtgcactcaataaaaattctcctgtttcaacccgaggtctctctcatcctcctgaatcccacaacaGGAGAATTCCAGCATGCACCAGGTTCACGGGACAGTGCACGGTCACTGAAGGAAAAGTGGGGCGGG-GAGGGTGGTGTGCGGCTGTGAGCACCTCTTGTGCTTGCTGGGAGATGTAGTCTTATAAAGGACTCCCAGCCCTTTGGTCACAGGGCTGCAGCACCGCAATTCCAGCATACACCGGAATCAGAGACAGTGCGCGCCGGCAGAGGAAGAGGTAGAGCTGTGCGTGACTCTCTGGGCTTGAAGGAAAATGTAATCTCATGAACACTCCTTAATGAACAGTGCGCCTCACTGGAGGAAAAGGCGGGGCTGTGTAGGCCTTGCTTTGCTTGCTGAGAAGATGCAGTCTCATAA-CACTCCCAGCCCTTTGGTCACAGTGCTGCAGGACTACATTCCCATCATGCACCGGGATCAGGGATAGTGCATGTGCCTGGGCGAAGAGACAAAGTTTTGAGCGCCTCCTTTGGCTTCCTGGGAGATGTAGTTTCATAAAGACACCCAGACTTTTCATTACAGGGCAGCAGGACTACAATCCCAGTATGCACCAAGATCAAGGATAGTGCGCGTAACTGGAGAATGAGGCGGGATTGTGCACGCCTCGCTGGACTTGGTTCGGGATATGTATTCTCATAAACATGCCCAAACCTTTGGTCACAGGGCGGCAAGACTACAATCCCAGCATGCACCTGGCTAAGAGACAGTGCCTGTCACTGGAGGAAGAGGCGGAAGACTACAATCCCAGCCAGCACCGAGCTCAGGAAAATTGTGCGTCAGTGGAGGAAGACGCGGGGTTGTGTGCTACTCGCCAGGCTTGCTGGGAGTTGTATTCTCATAAACCCTCCCAGCCCTTTCATCACAGGGCTGAAGGACTACACTTCCAGCCCCAGCATGCACTGGACTCAGGGACAGCGCGCGTCACTGGAGGAAGAGGTAGGGCTTTGCGCTTCTAGCTGTGCTTTTTTGGGAGATGTAGTCTCATTAATGCTTCCCAGCCCTTTGGTCACAGA--GATCCA-GGACTGCAACCCCAACATGCACCCAGCTCAGGGATAATGCGCTAGTCACTGCAGGAAGAGGCAGGGCTGTGTGCACCTCCTGGGCGTACTGGGAGATGTATCCTCATAAACACTCCCATCCCTTTGGTCATAAGGCTGCAGGACTACAATCCTAGCATGCACCCAGCTCAGTGACAGTGCGCTAGTCTA a score=12698.0 s hg17.chr17_random 2293254 78 + 2618010 AGGAGAAAGAGGCCGGGCAGTGTGCGCCTTGCTGGGTTTCCTGAGAGTTGTAGTCTCATGGCCTCTCCCTGTCCTTTG s panTro1.chrUn_random 177609089 78 - 240967748 AGGAGAAAGAGGCAGGGCAGTGTGCGCCTTGCTGGGCTTCCTGGGAGATGTAGTCTCATGGCCTCTCCCTGCCCTATG s mm5.chr18 83485179 78 - 91083707 AGGAAGAGGGGGCTGTGAATTGTACAATTTTCTGGGCTTCCTGGGCTTCTCTGTTTCATGACCTCCCCTAGTCCTGTG a score=18942.0 s hg17.chr17_random 2293332 255 + 2618010 GTCACGGTGCTATAAGACTACAATCCCAGCATGCTTGGGGCTCACGGACAGTCTACATCACTGGAGAATGAGGGGAAGGTTGTGTGCACCTCGCTGCACTTGCTAGGAAATGTAGTTTCATAAAGACTCTGAGACCTTTTGTCACGGGACTGCAGGACTCCAATCCCAGAATGCATCAGGATCAAAAACAGCATGCGTCACTGGGAAAAGATGTGGGGCTGTGTGCGTCTCCCTAGGTTTTCTCGGAGATGTAGT s panTro1.chrUn_random 177609167 254 - 240967748 GTCACAGTGCTATAAGACTACAATCCCAGCATGCACGGGGCTCACGGAGAGTCCACATCACTGCAGAAAGAGGGGCAGGTTGTGCGCACCTCGCCGCGTTTGCTGGGAGATGTTGTTTCATAAAGACTCTCAGACCTTTTGTCACAACGCTGCAGGACTACAATCCCAGGATGCATCGGGATC-AAAGCAGTATGCGTCACGGAGAAAAGATGCGGAGCTGTGTGCGTCTCCCTAGGTCTTCTGGGAGATGTAGT a score=13564.0 s hg17.chr17_random 2293587 150 + 2618010 CTCGTGTCCTCTCCCTACCCTTGGCTCACAGTGCTATAAGACTACAATCCCAGCATGCTTGGGGCTCACGGACATTCCCCTTCACTGGATAAGGATGGGAAGGTTCTGCGCACCTCGCTGCGCTTCTTGGGAAATGTAGTTTCATAAAGC s panTro1.chr3_random 33829130 150 + 55759144 CTCGTGTCCTCTCCCTACCCTTGGCTCACAGTGCTATAAGACTACAATCCCAGCATGCTTGGGGCTCACGGACATTCCCCTTCACTGGATAACGATGGGAAGGTTGTGCGCACCTCGCTGCGCTTGCTGGGAAATGTAGTTTCATAAAGC a score=10356.0 s hg17.chr17_random 2293737 139 + 2618010 CTCTCAGACCTTTTGTCATAGGGCTGCAGGAC-TACAATCCCAGTATGTATCAGGATCAAAAA-CAGTATGCGTCACTGGGAAAAGATGTGGGGCTGTGTGCCTCTCCCTACGTTTTCTGGGAGATGTAGTCTCATAAACA s panTro1.chrUn_random 63263372 141 + 240967748 CTCTCAGACCTTTTGTCACAGGGCTGCAGGACCTACAATCCCAGGATGCATCGGGATCAAAAAACTGTATGCGTCACGGGGAAAAGATGCGGGGCTTTGTGCCTCTCCCTAGGTCTTCTGGGAAATGTAGTCTCAAAAACA a score=9153.0 s hg17.chr17_random 2293876 169 + 2618010 CTCTTGGCCCTTTGGTCACAGGGCTGCAGGACTACAATCCCAGCATGCAGCGAGTTCAGGGACtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCCTGGAGGAAGACGTGGAGCTGTGC--GTGCCTCGCTGGGCTTGCTGGGAGATGCATTCTGATAAC s panTro1.chrUn_random 177609421 139 - 240967748 CTCTTGGCCCTTTGGTCACAGGGCTGCAGGACTACAATGCCAGCATGCAGCGGGTTCATCGAC--------------------------------AGTGTGTATCACTGGAGGAAGACGTGGAGCTCTGCGTGTGCCTCGCTGGGCTTGCAGGGAGATGCAGTCTCATAAC a score=45052.0 s hg17.chr17_random 2294045 645 + 2618010 CAATCCCAGCCCTTTCATCACATAGCTGTAGGACTACAATTCCAGCATGCACGGGGCACCGGGACAGTTCGCCTCAATGGAGGAAGAGAAAGGGGTACATGCGTCTCGCTGGGCTTTCTGGGAGATGTAGTCTCATTATTTCTCCCAGCCCTTTTGTCACAGGGCTTCAGGACTACAATCCCAGCATGCACCGTGCTCAGGGAGAGCGCGCCTCAGTGGAGGAAGAAGTGGACCTGTGCTCTTCTCGCTATGCTTTTTCGGAGATGTATTCTC--ACACACTCTTAGCCCTTTGGTCACTGGGCTGCCCTTTGGTCACAGGGCTGCAGCACTACAATCCTAGCATGCAT-GGGACTGAGGGAGCATGCGCTAATCAGTGGAGGAAGGGGCGAGGCTCTGCACGCCTCTCTGGGCTTGGTGGAAGATGCAGTCTCATAAACACTCACAGCCCTTTTGTCACAGGGCTGCAGCGCTACAATCCTAGCATGCACCGGGCTCAGGGAAAGTTGGCGTCACTGGAGAAAGAGGCAGGGTTGTGTGCACCTC-CTGGGCTTGGTAGGAGATGTAGTCTCATAAACACTCCCAGACCTTTCATCACCGGGCTGCAGGACTACAATCCCAGCATGCACCCAGCTCAGGGACAGTGCG s panTro1.chrUn_random 177609701 629 - 240967748 CACTACCAGCCCTTTCATCACATCGCTGTAGGACTACAATTCCAGCATGCACGGGGCGCCGGGGCAGTCCGCCTCACTGGAGGAAGAGAAAGGGGTGTGAGCGCCTTGCTGGGCTTTCTGGGAGATGTTGTCTCTTTATTTCTCCCAGCCCTTTGGTCACAGGGCTTCAGGACTACAATCCCAGCATGCATCCTGCTCAGGGACAACGCGCGTCACTGTAGGAAGAGGTGGACCTGTGCTGTTCTCGCTATGCTTTTTGGGATACGTATTCTCGTAAACACTCCCAGCCCTTTGGTCACT-------------------GGACTGCATCACTACAATCCCAGCATACATCGGGA-TCAGGGAGAGTGCGCTAATCAGTGGAGAAAGGGGCGAGGCTCTGCACGCCTCGCTGGTCTTGCTGGGAGATGCAGTCTCATAAACACTCCCAGCCCTTTGGTCACTGGGCTGCAGCGCTACAATCCTAGCATGGACCGGGCGCAAGGAAAGTGCGCGTCACTGGAGGAAGAGGCAGGGTTGTGCACGCCTCTCTGGGCTTGGTGGGAGTTGCAGTCTCATAAACACTCCCAGACCTCTCATCACCGGGCTGCAGGACTACCATCCCATTATGCACTGGGGTCAGAGACACGGCC a score=10526.0 s hg17.chr17_random 2294690 139 + 2618010 CATTACTGGAGGAAAAGGCTAGGCTGTGGACCCCTCCTTCTGCTTCCTGGGAGAGGTAGTTTCATGGAGACTCCCAGAACTTTCATCACAGGGATGCAGGACTACCATCCCA-GTATGCACTGGGGTCAGGGACAGTCCG s panTro1.chrUn_random 63264421 137 + 240967748 CATTACTGGAGGAAAAGGCTAGGCTGTGGACACCTCCTTCTGCTTGCTAGGAGATGTAGTTTCATAAAGACTTCCAGAACTTTCATCACAGGGCTGCAGGACTACCATACCAGGTATGCACTGGGGTCAGGGACA---CG a score=9983.0 s hg17.chr17_random 2294829 127 + 2618010 CGTCAGTGGAAAAAGAGGCGGGGCTGTGTGCGTCTTCCTAGGCTTGCTGGGAGATATATGCTCATAAACACTCCCAGCCCTTTGGTCGCAGAGCTTCAGGACTACAATCTTAGCATGCACCTGTCTC s panTro1.chrUn_random 177610330 127 - 240967748 CGTCAGTGGAGAAAGAGGCGGGGCTGTGTGCGTCTCCCTCGGCTTGCTGGGAGATGTATTCTCATAAACACTCCCAGCCCTTTGGTCAAAGGGCTACAGGACTACAATCCCAGCATGTGCCAGTCTC a score=5685.0 s hg17.chr17_random 2294956 66 + 2618010 AGGGACAATGCGTATCACTGGGGGAAGAGGCGGGGCTGTGTGCTCCTCCCTAGGATTGCTGGGAGT s panTro1.chr3_random 33830468 66 + 55759144 AGGGACAATGAGTGTCACTGGAGGAAGAGGCGGGGCTGTGTGCTCCTCCCTAGGATTGCTGGGAGA a score=8708.0 s hg17.chr17_random 2295022 106 + 2618010 TGTATTCTCATAAACACTCCCAGCCCTTTGGTCAAATGGCTACAGGACTACAATCCCAGCATGCGCCAGTCTCCGGGGTAAGGCATAGCCCTGGAAGAAGGGGCAA s panTro1.chrUn_random 63264615 106 + 240967748 TGTATTTTCATAAACACTCCCAACCCTTTGGTCAAAGGGCTACAGGACTAGAATCCCAGCATGCGCCAGTCTCCGGGGCGAGGCACAGTTCTGGAAGAAGGGGCAG a score=83447.0 s hg17.chr17_random 2295128 1051 + 2618010 AGTTGTACATGCCCCACCTAATATGCTGGGAGCTGTAGTCCGTTAACTGCTCTCAGCCTATTTGTCGGTGGGCTTCAGAACCATAATCTCAGCATATACCGGGATCCGGGGTGCATAGACCTGGAGGGAGGGACAGAGCGGTGTGGACTTCCCAGTGTCCAAAGCATTGCTGAGTTCTTATGCTATGCCGACTCTTTGCCACAGAGAGTGAGTACAGAGGTGGACCTGGAGGACAGGTCTGGGCTGAGCATTGAGGAGGGTATTACCCTATGTAGGCACCTTACCTTTGCCCAAATCAGGCGGGTTATCCTCACCCGATTGGCCCTATGCTTCTCAGGTTCCTCTTTCAGCTGCACCCAGGGTTCCTTCCAGAGCATTGCACCTTCTGCAGCTCAGGGCACTGCCTTTTTTCCTAAACTACTGTGGAAACTGTCCTGATGTCTGAGACACTGTCCATTGTGCAGCAGCCCTCTTTTTTCTCTAGCCAGAGCGCGTGCTCAATGGCTTTTGAGAGAAATCTTCCACATGGCCTGCTTGTGAACAGCTTCAGAGCTCTGCAGGGGCTGACAAGGGCTGAGCCTTCCTGGAAACGTCACTCTCAATGGCGCCTTTTTCACGAATGTGAAAGTCGAGGCATCAGGAA-GTTAGTTTAATGGGTTGCAGAAAAT---CTAAGAGCAAGGGAGAAAACCCGCTTTCCAAGGCGTGAGTTTTGTGAGCCA-TTTTCATCAACCCA-TTTAAGTGGACAAGCTCCAAAATGTAACCTGAAGCTGCTGACTATTTAGGCATTTTACAATTAAAATCATCGGTCTCATCCCAAGTCGTGCCTCACTTGCCAGTGTCTCAGAGACACAAATGGGACCTGATCCCTCAGGAACAGATAGTGTTCCAGGTTCGTGGGAGCGACTTTTAAGTTGTGGAGCACTTGGGGTCGTTTGAAACCCActatcttcagtagggacttttacgtctagagagcatgtgcattttgattttatctgtcttcaagctgaacctttgctcattttaacaagtaaaaacacattcctgggtg s panTro1.chrUn_random 177610492 1055 - 240967748 AGTGGTACACGCCCCACCTAATATGCTGGGAGCTGTAGTCTGTTAACTGCTCTCAGCCTGTTTGTCGGTAGATTTCAGAACTATAATCACAGCATGTACCGGGATCCGGGGTGCATAGCCCTGGAGGGAGGGGCAGAGCGGTGTGGACTTCCCGGTGTCCAAAGCACTGCTGAGTTCTTATGCTATGCCGACTCTTTGCCAAGGAGAATGAGTACATAGGTGGACCTAGAGGACAGGTCTGCGCTGAGCATTGAGGAGGGTATTACCCTACGTAGGCACCTTACCTTTGCCCAAATCGGGCGGGTTGTCCTCAACTGATTGGCCCTATCCTTCTCAAGTTCCTATTTCAGCTGCACCCAGGGTTCTTTCCAGAGCATTGCGCCTTCTGCAGCCCAGGGCGCTGCCTTCTTTCCTAAACTGCTGTGGAAACTGTCCTGATGTCTGAGACACTGTCCATTGTGCCGCGGCCCTCTTTTTTCTCTAGCCAGGGCTCATGCTCAACAGCTTTTGAGAGAAATCTTCCATGTGGCCTGCTTATGAACAGCTTCAGAATTCTGTAGGGGGTGACAAGGTCTGTGCCTTCCTGGAAATGTCACTCTCAATGGCGCCTTTTTCACGAATGTGAAAGTTGAGGCATCAGGAAGGTTAA-TTATTGGGTTGCACAAAATCTGCTAACAGCAAAGGAGAAAACCCCATTTCCGAGGCATCAGTCTTGTAAGCCATTTTTCATCAACCCATTTTAAGTGGACAAGCTCCAAAATGAAACCTGAAGCTGCTGACTATTTAGGCATTTTACACTTGAAATCATCGATCTCATCTCAAGTCACGCCTGACTTGCCAGTGTCTCAGAAACACAAATGGGACCTGATCCCTCAGGAGCAGATAGTGTTCCAGCTTTGTTGGAGCGACATTTAAGATGTGGAGCACttgagctcgtttgaaacccgctatcttcattagggacttttacttctagagagcatgtgcattttgattttatctgtcctcaaactgaacttttgctcattttaat-agtaaaaacacattcctaggtg a score=40000.0 s hg17.chr17_random 2296191 509 + 2618010 atgctaatgagacatgaaacatatgcaaaaatatgtacagctactgcacatgtgcacccagaagaccagtcaaagcatgccttctataacacttctttccaccttcttatgaataatcatgtaaaactcccagaaggagggtttctccagcaacaattaatgctgtctcactcttatgagcaggctgccctggaatctctttctcagactgtaccgtctattctgcacttgattttcaacgtattcttttc-ttttttgtgtgcaataaattactctatgctgtacttcttttgctgcatgtttcctgtttaaattcttttaagctaagaagataagaa-ccaaggtattacatcagccatcaacatttcttttgccatggcccggagagaggtttgtctgcttcattaatttcagtttcccttttcttgcagtgaatactatggcacttccagactacctggttaactatcgctggttgttccagcgctgtttcactaaagttctggggg s panTro1.chrUn_random 177611557 511 - 240967748 atgctaatgagacatgcaatgtatgcacaaatatgtacagttagtgcacatgtgcacccagaagaccactcaaaacatgcttacactaacacttctttccaccttcttatgaataatcgtgcaaaacccccagaaggagggtttctccagtaacaattaatgctgtctcactcttatgagcagcctgccctggaatctctttctcagaatgtaccgtctgttctgcacttaattttcaaagtagtcctttctttttttgtgtgcaataaattactctatgctgtacttcttttgctctgtgtttcttgtttaaattcttttaaactaagaaaataataattcaaggtgttacatcagccatcaacaTTTCTTTTGCCATGGCCCGGAGAGAGGTCTGTCCGCTTCACTGATTTCACTTTCCCTTTACTTGCCGTGAATACTGTGCCACTTCCAGACTACCTGGTTAACTACCGCTGGTTCTTCCAGCACTGTTTCACTAAAGTTCTGGGGA a score=23290.0 s hg17.chr17_random 2296700 300 + 2618010 aaacgtgtttaaatcacctatattctctagagagagaatatatgtctgctctccttttggctgctgcatctgtactatccataaatgacactcaccgcatgggttgctctcaacatttcatattcgggctagtttgctgcttagtttcacatctttctggccacacttcagactcagcttatcgtttgctgtcccttcggcaatactcgatcgccacctagtggctattgtactttattttctgatcgggttttctgtttaca----------gttttgtcttgttttgttttgagtggaatattaagag s panTro1.chr3_random 33765604 309 + 55759144 aaacgtttttaagtaacatatattctttagagagagaatatatgtccgctctccttttggctgctgtgtctgtactctccataaat-acactaactacatgggttgctctcaacatttcatattagggctactttgctgcttagtttcacACCTTTCTGGCCACACTTCAGACTCAGCTTATTGTTTGCTGTCTCTTCAGCAATACTTGATCGCCACCTAGTGGCTATTGTAATTTATTTTCCGGTCAGGTTTTCTGTTTACAAttttgttttgttttgttttgttttgttttgAGTGGAACATTAAGAG a score=393116.0 s hg17.chr17_random 2297000 4859 + 2618010 aaccctgtcccttcaggctttatgcatttcccacctccttgaaattgttcttcaacaggttttctttgctgaacaaacgactcaaagtcatgtagatgcccggtcgtggggtttgaatctgagcattgcaggtgtcataattcggcatcataaattgcaaaccagtaaattagggaaaggcttgtcagccagacatctgccccccagccagcagtgggggtcatctcggcacggctggagatgtgcagcgcttgtgagagataggacggtgtatggcacatgcctatgacctcctagagcttcagttaatggggtctcgaggggctgtgctggacacct-tggtgg-ttccacttgtcccattgtga-tgcccatggcctcctggactttagtacatgttctgacgtt-gcaag-attccgtcggcaccatgggagccgcttcctctactgtcattgaaacacccctgggatgtatatttaaaaattgaaacagcttttggctagatgaaccaaaaaaaaaAAAAagaaaagaaaaaacttatcttcttttgtaatactatttagcttgcatacagattagctcacaaaacatggctggggaatgagactgtgaactttaacaccctcctacagctagatcttttctgtagaaatcagggaaaatggtctgaaatatcctatgtgcaaacctttatggcctgacaacaaaacccagctctatgcaGCACCTGTGGGCTAAAGCCTAGTAAGCCACAAAGCCCCTCAGAAGCATTAGAAGATCATCTCTTATTAAGGGGAAGGGACCCCAGACCCAACAGCCCAACACCAGCTCCAGATAGGGACTCTCAAGGGCCTACACCTCCTGTAGAATCCGCAGCATCCCCACACTATCAGAGTCTTCTGTAGAATCTAAGCTTGTTTCACCTCCTCCTTATGCTCCTCTCTATCAGCCTTTGCCAGGTACAATAGTGAGCAGCCCAGCTGTAGTTACTCGCGGTGGAACTTCACACCATGCAGGGCCAGAGAATTTGATCCGCTTACAGAAAGTCCCAAATGGAGAGAGGACCATCAGAGTGCTTGTTCTCTTCTCAATAAATGATCTAATCCAATGCACGCAACAGCTCTGATGGCTCCCAAAGAACTTCAGCGCATTTACTGAAGCCTTCCAGGCTCTAACTTTGACCACCATTCAACTTCACCATCCATAAATGGACCCAATGACTGCTGACCACGTAGCTGCAGAAAACTTTTGCTTATTGGCAAAAAATAGAAAAGACTTAaaacttttgctgctttcaccatttcaatgcagaattcctttgcagcacaaatgtcaccataaggtggagccttgggaatccagtataaactatctcagaaaatctcagtgtgtccccaacaggcagcagagggcctcaatagacttcaacaacatctggact-ccatggccactgtagtccgacaaaaccaaggagcctgggatcttctcccagccgggtaaagaggaacatgtttatatctaaaagaagaatgctg-tttttgagatcaatcagtctggtttagtcgaagaaaatattaataatatcatcacccaggcagacaaaattgaatctctaggaacttccatgggaacatgaaagctatgtccgttgtctgccttgctctctttaatagtacccgtcattattatattttcaacttttacttttgttccaattttgtttaaaatgttaactgatttcttgctctcttgcttacggcaactccatgtttgcatgatggttttgcaaggctttcaacctttggttgccagcatcttcccactggttccacgaacgacatggtttacaccctgttagatcacacaggaagaaactttaaggcccaggctaggcagaagtaacacccgctcagcaggaaacagctccagaaataatggcctaacccctcaacctccaatatgattattgccctaaaatctcttagggggaaattgaggcagaatagatagtacagaaaatgaccatgatctcaggatacagaaaccatggtgactgtacagccaacacaataagccgtagcattcgcattgtaattgggcttattcaagcaaagttatcctcattaaggactttctgttctagaaagcatgtgcattttgatttcacctgtcctcaaacttaactttcgcttattttaatagcaaaaaatataggccctagccaggcaaggtggctcataactgtactcccagcactttgggaggctgaggaagatggatcacttcaaaccagaagcttgagactagactggccaacatagtgaaatctcgtctcaactaaaaatacaaaaattagcagggtatggtggtgcatgcctgtaatcccagatactctggaggcagaggcatgagcatggcttgaactca-ggaggcggaggttgcagtgagcagagatcacaccactgcactccagcctgggtaacacggggagactctgtct----caaacaaacaaacaaacagaaatacactcctgggtggagatctaagatgctaacgagacatgcaacatatgaacaagcatgtatagtcactgcgtatgtgcacccagaatatcactcag--aacatgcttataagcaactcc-tcttccctccaccttattaat-aataatgtaaaactcccgtaagggggtttctccagcgacagtccacgctgtctcactcttacgagcagcccgccctggagtatctctctcagggtgtactgtaatctgcacttaactttcaagtattttcttttccaataaattatgctgtactttttttccttgtgtctcttgtttaaattcttaaaaactaagaagacaagaacagaggtatcacatcacttgtcaacacagcaataagtcagcctccttcttgtaagcatagcccatgcagaaaaggagagtcgcatcacctaggtgctggatccagagatatgtcacaacttatcccaggcaccaagttaaggtcattgaagatagtcgtgttaaatagtttctggccccagggatatgtcacaatggctcctgtgagcagagatcaggcagcataatcacataaccggtgtgctggacacagcgataagccactctttcatctgtgggcatgacccgggcaagaaagaagagccacagcatttaggtgcttgctgcagaggtacgtaacaatctctcttatgggcaaaactcgggtaagagaggagagtcaaatctccaaggtgattcatgtagaaatttgtcacaagaaactttttaggcagggcccatgttggatcttcttatcttccagaagttaggtccagggatacgtcagaatacccaaaatacacagggctcagtcaataaaggagagtcacatcacccaggtgctttgtctagacatatgtcacatctcttttatgggga-aagctcaggtaaaaaaggaaggtcacatcaaatagttgatagacccagagatatgtcactttgcctcctgcttgaagtgtctaggccaaa-gactcacatcacctcagtgttaggcccgtgttcatatataaacattcaaccagagttgaaatggtggcccacatctaaactcagctcataggcaagggaggactctcctatcctgacctagttaattgtaatgatgttgactctcatacc--gggcttaatgctacaagtacgatcatgggtccctaccattaggaaggtgtcaaagttgattacgactctcatgcatagagtatagggccattgggtagtacacagagcgtgctaactgggccgagcacacaggtgagattgtgacactcatatgcacacccagccaacagtaactattgtcatcctctcacgggaacacaggtcagtctgcagaggaattgagactctcaTGCACAAATCCAGTCTGGTGTTGAGAGGGTTATTCGTGAGCTTAGACCCAACATACAGGAGGTGTTGAATGTCATGCCTACAACTGAGacagttgtgggattgttaatctaattcctggaccattctgcagctttcatggtgaaatttgccggtgcctagcacctgagtgacttgatggtctcacatggacccagcccacagatgggatattaacatattgctggatccagcacattgagggtgtaactctattctccttccttggcactgcccacagtgagcattttgacatatcgctagaccttgcaccc-ggagatgtgagtctcctcttctgccttggcgctgccctcaggaagcattgttatatatagcttggcctcgcatccaggttatgtgactctccggcttgtgcattgcccatatgggacactgtgttatattgctgggtccactactcaggctatgtaacccaacagcctgggccctgccttacaggggcattgtgacatatctctgtgctcatcagcctggtaatgtgattctcttctcctgcctggtccctttacacagaagggattgtgacacgttgctgggcttagcaccaagt---tgatgatgtgaatcttctgcctggatcgagttcacagaaggcatcgtgacatacctctgggtccatcatctatttgatgcaactctcctctcttacctgagcattgcccataagacagattgtgacataaccctgggtctagcaccgggatgatgtgactcctctccttgcctggggcatgcccacagaaggaagtgtgacttataactgggaacagcacaggggtgatgtgattcttctgcctggtccctaccta---caggagtcattgtcaaatgcctctgggcccat-catctagactatgtgactctctacttcttcctatggccggctcacataagga s panTro1.chrUn_random 177612068 4853 - 240967748 AACCCTGTCCCTTCAGGCTTTATGCATTTCCCAGCTCCTTGAAATTGTTCttcaacaggctttctttgctgaacaaaagatgcacagtcgtgtatatgcccagtcatagggtttgaatctgagcattgcaggtgttataattgggcatcataaatggcaaaccactgaattagggaaaggcttgtcagccagacatctgctccccagcgagcagtgggggtcatctcggcagggctggagatgtccagcgctggtgagagctaggacagtgcatggtaaatgcctatgacttcctagagcttcagttaatggggtttcaaggggatgagttggacaactctggtgggttccacttggcccatgggggctgcccacagcctcctggactttagcacatgttctgtcgtttgcagggattctttcggcaccatgggaatcacttcctctactgtcactgaaacacacctgggatgtatatttaaaaattgaaacagcttttggctaaatgaagcaaaaaaacaa-----------------ttatcttcttttgtaaaactatttagcctgcatacagattagctgacaaaacatggctggagaatgagactgtgaaatttaacaccatcatacagctagatcttttctgtagtaatcagggaaaatggtctgaagtatcctatatgcaagactttctggcccgacaacaaaacccagctctatgcaGCACCTGTGGGCTAAAGCCTAATAAGCCACAAAGCCCCTCAGAACCATTAGAAGATCATTTGTT-TTATGGGCAAGGGACCCCAGACCCTACAGCCCAATTCCAGCTCCAGATAGGGGCCCTCAGAGGCCTACACCTGCTTTAGAATCCCCAGCGTCCCCACACTATCAGAGTCTTCTGTAGAATCTAAGCTTGTTTCATCTCCTCCTTATGCTCCTCT--ATCAGCCTTTGCCAGTTACAATAGAGACCAGTCCAGCTGCAGTTACTCACAGTGGAGCTTCACACCATGCAGGGCCAGAGAATTTGATCCGCTTACAGAAAGTCTCAAATGGAGAGAGGACCATCAGAGTGCTTGTTCTCTTCTCAATAAATGATCTAATCCAACGTAAGCAACAGCTCTGATGGCTCTCAGACAACTTCAGCGCG-TTACTGAAGCCTTTCAGTCTCTAACTTTGACCACCGTTCAACTTCACCATCCATAAATGGACCCAATGACTGCTGCCAACTCAGCTGCACAAAAGTTTTTCTTATTTGCGAAAAATAGAAAAGATTTAaaacttttgctgctttcaccattttaaagcagaattcttttgcagcacaaaggtcaccatAAGTTGgatccttgggaatccagtataaactatctcagaaaatctcagtgtgtccccaacagggagcagagggcctcaatagacttcaacaacatctggactaccatggccactgtagtccaacaaaaccaaagagcctgggatcttctcccagccaggcaaagaggaacatgtttatatctaaaagaagaatgctgttttttgagatcaatcagtctggtttagtcctagaaaatattaataatatcatcacccaggcagacaaaattgaatctctaggaacttccatgggaacatgaaagtgatgtccattgcctgccttgctctctttaatagtaccagtcattattatattttcaacttttacttttgttccaattttgtttaaaatgttaactgatttcctgctatcttgcttgtggcagctccatgtttgcatgatgg-tttgcaaggctttcaatctttggctgccaacatcttcccactggttccacgaacgacatggtttacaccctgttagatcacacaggaagaaactttaaggcccaggctaggcagaagtaacacccactcagcaggaaacagctccagaaaaattggtctaacccctcaacctccaatatggttattgccctaaaatctcttagggggaaattgaggcagactagatagtccagaaaatgaccatgatctcgggatacagaaaccgtggtgactgtacagccaaaacaataagccttagcattggcattgtaattgggcttattcgagcaaagctatccttattaaggactttctgttctagagagcatgtgtattttgatattacctgccctcaaacttaaattttgcttattttaatagcaaaaaatgcaccccctagccaggcacggtggcttatacctgtactcccagcactttgggaggctgaggaagatggatcacttcaaactagaagcttgagactagactggccaacatagtgaaaccccgtctaaatgaaaaatacaaaaattagcagggtatgatggtgaatgcctgtaatcccagatactcaggaggcagaggcacgagcatggcttgaactcagggaggcagaggttgcagtgagcagagatcacaccactgcacaccagcttgggcaacacggcgagactctgtctcaaacaaacaaacaaacaaacagaaatacactcctgggtggaaatataagatgctaacgagacatgcaacatatgaacaatcatgtacagctactgcgcatatgcacccagaatacca--cagataacatgcttactagcaactccatcttccctcctccttattaataaataatgtaaaactgccataaaggggtttctccagcgacaatccacgctgtctcactcttatgagcagtccgccctggaatatctctctcagggtatactgtattctgcacttaattttcaaatattttcttttccaataaattatgctgtactttttttcttggtgtctcttgtttaaattcttaaaatctaagaagacaagaacagaggtatcacatcagttgtcaacacagcaataagtcggcctccttcttgtaagcatagcccatgcagaaaaggagagttgcatcacctaggtgctggatccagaggtatgtcacaatttatcccatgcacaaagttaaggtcattgaggagagtcgtattaaatagtttctgggcccagggattagtcacaacggctcctgtgagaagagatcaggcagcataatcacataaccggtgtgctggacacagcgataagccac-ctttcatctgcgggcatgacccaggcaagaaagaagagtcacggcatttaggtgcttgctgcagaggtacgtaacaatctctcttatgggcaaagctcaggtaagagagaagagtcaaatctccaaggtgattcatgtagaaatttgtcacaagagactttttaggcagggcccatgctggatcttcttatcttccggaagttaggtacagggatatgtcagaatacccaaaatacacaggactcagtcaataaagaagagccacatcacccaggtgctgggtctagacatatgtcacatctcttttatggggagaagctcaggtaaaaaaggaaggtcacatcaaatagttgatagacccagagatatgtcacattgcctcctgcttgaagtgtctaggccaaaggactcacatcacattggtgctaggcccGTGTTCATATATAAACATTCAAccagagttgaaatggtggctcgtttctaaacccagcttataggcaagggatgagtctcctatcctgacctagttaattgtaatgatgttgactctcat-ccttgggcttaatgctacaagtatgatcatgggtccctacgattaggaaggtctcaaagctgattacaactctcatgcatactgtatagggccattgggtagtacacagagagtgctaactgggccgagcacacaggtgagattgtgacactcatatgcacacccagccaacagtaactattgtcatcctctcacgggaacacaggtcagtctgcagaggaattgagactctcaTGCGCAAATCCAGTCTGGTGTTGAGATGATTATTCGTGGGCTTAGACCCAACATACAGGAGGTGTTGAATGTCATGCCTACAACTGAGacagctgtgggattgttaatctaattcctggaccattctgcagcttccattgtgaaattt-ccggtgcctagcacctgagtgacttgatgatctcgcgtggacccagcccacagatgggatattaacatattgctggatccagcacattgagggtgtaactctattctccttccttggcactgcccacagtgagtattttgacatatcgctagaccttacacccaggtgatgtgagtctcctcttctgccttggcgctgccctcaggaagcgttgttatatatagcttggcctcgcatccaggttatgtgactctccggcttgtgcactgcccatatgggacactgtgttatattgctgggtccactactcaggcgatgtaactcccctgcctgggccctgccttacaggggcattgtgatatatctctgtgctcatcagccaggtgatgtgattctcttctcctgcctggtccctttacacagaagggactgtgacacgttgctgggcttagcaccaagttcatgttgatgtgaatcttctgcctggatcgagttcacagaaggcatcgtgacatacctctgggtgcatcacctatttgatgagactctcctctcttacctgagcattgcccataagagagattgtggcatatccctgggtctacccctgggatgatgtgaat--tctccctgcctgggtcatgcccacagaaggaagtgtgacttataactgggcacagcacacgggtgatgtgattcttctgcctggttccta---aaagcaggagtcgttgtcaaatgcctctgggcccgtccatgtaga-gatgt-actctctacttcttcctagggcctgctcacaTAAGGA a score=41116.0 s hg17.chr17_random 2301859 499 + 2618010 ttgtgacatattactttgcccagtacctacatcatgtgacttttctctcatatctgggctccgtcttggagatgaatgtgacacatagctaggcctagcccctaggttctgtaacttctcttttttcaaaatcctacccaccagggtcattgaaacatctctctgggcacttcacttaggtaatgttatcctgttgcctggagcctcccctctggggggtatggtgacatattgctggacacagtacctatgtgatatt-ctctcctttcttgcctgggccttgtatacattgtgtattataatatatggctgggttcaatgactaggtgttgcaactctcatgcataggtcctacccgcagggacattatgacatttctttagctctgactctcctctttttccttagccctgccaaaaagggaggtggtgacatataactggacctagcaaccagctaatatgagtctcctcttttgcctgcacccagcatattttag s panTro1.chrUn_random 63271328 499 + 240967748 ttgtgacatattactttgcccagtacctacatcatgtgacatttctctcatgtctgggctccttcttggagatgaatgtgacatatagctcggactagcccctaggttctataacttctcgtttttcaaaatcctacccaccaggggcattgaaacatctctctgggcacttcacttaggtaatgttacattgttgcctggagcctcccctc-agggggtattgtgtcatattgctggacccagtaccttcatgatattactctcctttcttgcctgggccttgtatacattgtgtattataatatatggctgggttcaatgactaggtgatgcaactcttatgcatagcacctacgcacagggaccttatgacatttctttagctctgactctcctctttttccttagccctgccaaaaagggaggtggtgacatatatctggacctagcaaccagctaatatggctctcctcttttgcctgcacccagcgtattttag a score=333012.0 s hg17.chr17_random 2302358 4116 + 2618010 gtgttgtatcatatcctttgtctcaacACCTGCAGGATGAAAGGCTCCTGCCTGAGcccagccatctgtcaaaattgtcattctcccacacgaacatggaacataaatgaggttctgaaactcacacccagaggcagtgaaaagttggaaaattggctctaataagtggatgttgtccttaagtgggtttgtgactccctgaccaagatccaaaacacttgtgaggctgtgagtcCACTAAGATAACTCCGTTTTCAAAAGGGATTAAGGCTCTCATGGAAAAAacccattcctccattgagattgtgacttatgcacatagatgcaacatacaggaggcgttcactctcatatccagaactggcacttatgagggattgttaatctcatccatggaccttcctgcaggtgtgattctgacgtacacctctagccagctcctgagtgatttgacttttttgcctgggtgtagcccacagatgagattgtgatatatccttgaatccagcatctaattaatatgcttctaatctcctgtcttggcactgcccataaagggtatcctgacctaacactggtcctggcactttgttatatgactgtgtcctgtgctttgcccacatgagccattgtgacatattgctgggtccaacacccaggtgatgtaactcttgtctagactttacctacatggggtcattgtgacatatctgtgcactgttcacccaggtgatgggactctcttgtcctgtctggtgcctgttcacagctgggattcttacacatcgctggggacagactctaactaatgtgactgtctttttactgaggactacccacaggaggaattg-gaaatatctatgggcctctcacttaaatgatgtgactcttttcctgggctcatttctcagggttattgtgacatatggctgacctcagcatggaggtgatgtgagtttcttctactgctagggctctgaccaaagacagatt-acaatgtatcatcgggcccagcacctgggtgatttgactctcccctcttggctgggccctgcatatattgtgtattgtgacatatcactgggtccaacacctaggtaatgtgacttacctgcatggcccatttccacctgggtattatgacatatctttttgttcatcacttaggtgatgcaactctcctctttgccttgggccctgcataatttagctattgtgttgtatcactgggccaatcgcctagacaataggaatcttctgccaaggccctgactactggggaccttgtgacatagctctgcatttatcacctagaaaatgtgattccccc----atttctgcctgagccctgctcacaagaaaaactgtagcatatttctgggcccagcaaacaggtgatgtgtttctcctgcctgtgccttgctcacagggaaaattgtgacatatcgctggacccagaacccaggtgaggtgactctgctgcatgtgtcatgctttcaggagggaacaagaacatatccctggcagaatacctagggatgtgactttcttgccttgtccctgtcctcaggggagaatgtgacgtatccctgacaatgacccaggtgatgagaccctcctgcttgctgactactcaaat-gtgagattgtcacatatattttggcctaacatgtaggtgtgatgatgacattcataccttaaaccaaccaataggagagatactttgtctcatatccaggctttacaaaatgtgcaaaattatgggtcttctcttactatgaaggtcagagaaaataagcactcttgcatatcctgtaaagcactcagatggtacagtgtcatcacagggcccagaacacaggtgagattgtgttctctgtgtgcacacccaccaatcatcagaattgtcattcctacacaggaacagaggtgattagggaggtctaaacctcatacctgaatgccgtccacagctggaattgtaactaccacatgtgaacatccagtcacagttgggatagtgacttatttctgaacccagtttacagccaagtaaagatcctcttatctgaatccagccagctggagagatgttgactctcatacctgggcttatggccacaggtatgatcataggttcatatcagcatgaagacctcagagtggattatgtttaatgcatactctacaaagcccataggaggtacatagtgtcctaacagggcccagcaaacaggtgagattctaacactcatgcacactctggtgacaataaaagtta---tcctcaaaaatgagcacaaccggccgggtg---cggtggatcaggcctgtaatcgcagcactttgggaggcc-gaggcgggtggatcacgaggtcagga-gatcaagaccatcctggccaac-gtggtgaaaccccgcctctctactatttat--------------------------------------ttattattattattttgagacagaatcttgctctgtcacccagactgg-agtgcagtggcaccatctagtcttactgtaacctccgc-ctcccaggttcaaacaattctcttgtctcagcttcccgagt-agctgggactacaggctcatgtcaccatgcccagttaatttttatatttttggtagagacggggtttcaccatattgattagactggtgtcaaactcctgacttcaagtgatccacccacttcgacctctcaaagttctgggattacgggcatggaacactgtgcctggcaaccccatctctactaaaaatacaaaaattagctgggcatggtggcatgtacctgcaatcccagctactcaggaagctgaggcaggagagtcgcttgaacccaggaggcagaggttgcagagaaccgagatcgtcccactgcactccagcctggcaatagagtgagactccatctcaagggagaaaaaaaaaaaaaagaaagcaaagaagaaagaaagaaagaaagaaagacagaaagaaagaaagagagaaagaaagaaa--aagagaaagaa----agaaggaaggaaaagaaagggagaaagaa------aagaa--aagaa--aagaaagaaagaaagaaagaaagaaagaaagaaggaaagaaagaaagaaagaaagaaaga--gaaagaaaaaaa-aGAAAATtgactctcatatatggatcttgtccacaggtaggtgggtgactctcaaaccaaaattcattacatctgtgagactgtaactctcctaaggggacacgg---------tcagccagagaagacacatttatgaatccagttcactgttgagattgagactGGTGTACTTAGGCCCAACATGCAAATTCTCATACCTGGAATCCGGACATGTGTGGAGTTGTTCATCTCATCCCTGTCGCTTTCTGcaggtgggattgtgacatacatctctgcccagctcccgagtattttagctctgtttcctgtgcccagctcacagatgggattctgatatatcactgaagccagcacctaggttatgtgactcttacctcctgccttggtgctgcccacaggggacattgggacatatcacttggccttgcacctaggtaatgtaagttttctgtcttgcattagtgctactcaccggggcgttgtgatgtattgctgggtctcacatccatgttatgtgactcttctgccggtgcccaggccacaatggccattgtgacatactgttgcatacaaaacctagatgatctacctctccttcctgagctttgcctaaggggacattgtgaaatatctatgagcccatcacccatgtggtgtgattttcttctcctgcctagtccctgcttaaagaaaggattgtgacatatcactgtgcccagcacctacctcatgttactcttcttttgttttttaggatttgtttggaaggagattgtgatacattggtgggtccaacttcgaggtgacattactctgttgactttgccctgcaagcagaaagcactgtgacacattattaggccca--------------tctcctgcctgaagcctgcctacagcaatttgtaacatatggcattgggacatatctctgagcccatcaactatttgataaaactcttcttttttaacaaaggctttgcctataggagagattgtgac-taattctgagctcagaaaataggt s panTro1.chrUn_random 177617398 4189 - 240967748 GTGTGGTATCATATCCTTTGTCTCAAAACCTGCAGGATGAAAGGCTCCTGCCTGAGcccagccatctgtcaaaattgtcattctcccacacgaacatggaccataattgaggttctgaaactcacacccagaggcagtcaaaagttggaaaattggctcttaaaagtggatattgtccttaagtgggtttgtgactccctgaccaagatccaaaacgcttgtgaggctgtgagtcCACTAAGATAACTCCGTTTTCAAAAgggattgaggctctcatggaaaaaacccattcctccattgagattgtgatttatgcacatagatgcaacatacaggaggcgttcactctcatacccagaaccggaacttatgtgggattgttaatctcatccatggaccttcctgcaggtgtgattctgacgtacacctctagccagcacctgagtgatttgacatttttgcctgggtgtagcccacagatgagattgtgatatatccctgaatccagcacctaattaatatgcttctattctcctgtcttggcactgcccataatgggtatcctgacctaacactggtcctggcactttgttatgtgactctgtcctgtgctttgcccacatgagccattgtgacatattgctgggtccaacacccaggtgatgtaactcttgtctaggctttgcctacaggggg-cattgtgacatatctctacactgaccacccaggtgatgggactcacttctcctgactgctacctgttcatagcagggattgttacaaatcGTTGAGGGCAGACTctaggtaatgtgactgtctttttactgagcgctacccacaggagccattgcaaaatatctgtgagcctctcacctaaatgtagtgactctttgcctgggctcatttctcaggggtattgtgacatatggctgacctcagcaccgaggtgaactgagttt-ttctactg-tagggctctgaccaaagagagatttacaatgtatcaccgggcccagcacctgagctatttgactctccgctcttggctgcgccctacatatattgtgtattgtgacatatcactgggtccaacacgtaggtaatgtgactcacttgcatgggccatttccccatgggtactatgaagtatcTTTTTGTTCATCacttaggtgatgcaactgtcctctttgccttgggccccacataatttagctattgtgacgtatcactgggccaatcacctagacaataggaagcttctgccaagaccctgactactgggggccttgtgacatagctctgcatttatcacctagaaaatatgatcccccccaccatttctgcctgaaccatgctcacaagaaaaattgtagcatatttctgggcccagcaaacaggtgatgtgtttcacctgcctgtgcttagttcacagggaaaattgtgacatatcactgggcccagaacccaggtggggtaactctgctgcatgtgtcgtgctttcaggagggaacaagaacatatccctggcagaacacttagggatgtgactctcttgccttgtccctgtcctcagggaagactgcaacatgtccctgacacagacccaggtgatgagactctcctgctt-ctgactacccaaatcgtgagattgtcacatatattttggcctagcatgtaggtgtgatgatgatattcataccttaaaccaaccaatagcagagatactttctctcacagccaggcttaacaaaacttgcaaaattatgggtcttctcttactatgaaggtcagagaaagtaagcactcttgcatatcctgtaaagcactcagattgtacagtgtcatcacagggcccagaacacaggtgagattgttttctctgtatacacacccaccaatcatcagaattctcattcctacacaggaacagaggtgattagggaggtctaaagctcatacctgaatgcagtccacagttggaattgtaactatcatatgtgaacatccagtcacagttgggatagtgacttatttctgaacccagtttacagccaagtaaagatcctcttatctggatccagccagctggagagatgttgactctcatacctggacttatggccacaggtgtgatcataggttcatatcagcatgaagacctcagagtggattatgtttaatgcatactctacaaggcccacaggaggtacatagtgtcctaacagggcccagcaaacaggtgagattctaacactcatgcacactctggtgacaataaaagttaccatcctcaaaaatgggcacaaccGGT---GTggctcagtggctcatgcctgtaatcgcagcactttgggaagcccgaggcggacagatcacgagatcaagaagatcaagaccatcctggccaacagtggtgaaaccacatctctctactatttatgatgatgatgatgatgatgattattattattattattattattattattattttgagacagagtcttgctctgtcacccagactggcagttcagtggcaccatctaggcttactgcaacatccgcgctctcgggttcaaacaattctcttgtctcagcttcccgagtcagcagggactacaggctcatgccaccatacccagctaatttttgtatttttagtggagacggggtttcaccatattgattaggctggtctcaaactcctgacctcaggtgatccccccacctcgacctcccaaagtgctgggattacagacatgggacactgtgcctggccaccccatctctactaaaaatacaaaaattagctgagcgtggtggcacgtacctgcaatcccagctactcgggaagctgaggcaaaagagttgcttgaacccaggaggcagaagttgcagagagccgagatcgccccactgcactctagcctggcgatagagtgaaactccatctcaagggaccaaaacaaaaa---------------gaaagaaagaaagaaagaaagaaagaaagaaagagaaagagaaagaaagaaaggaaaagaaagaatgaaagaagaaagaaagagaaagaaagaaagaagaaagaaagaagaaagaaggaaggaagaaagaaagaaagaa-gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaaaTtgactctcatatatggatcttgtccacaggtaggtgggtgactctcaaaccaaaattcattacatctgtgagactgtaactctcctaagggga----gaagttcttctcagccagagaagaatcatttatgaatccagttcactgttgagattgggactGGTGTACCTAGGCCAAACATACAAATTCTCATACCTGGAATCCGGACATGTGTGGAGTTGTTCATCTCATCCCTGTCGCTTTCTGcaggtggaattgtgacatacatctctgcccaggtcctgagtgttttagctctgtttcctgtgtccagctcacagatgggattctgatatatcactgaagccagcacctagatgatgtgactcttatctcctgccttggtgctgtccacaggggacattgggacatatcacttggccttgcacctaggtaatgtatgttttctgtcttgcattagtgctactcacggtggtgttgtgatgtattgctgggtcccacatccatgttatgtgactcttctgccggtgcccagtccacaatggccattttgacatattgttgcatccaaaacctagatggtctacctctccttcctgagctttgccaaaggggacattgtgaaatatctatgagcccatcacccatgtggtatgattttcttctcctgcctagtccctgcttaaagaaaggattgtgacatatcactgtgcccagcacctagctcatgttactcttcttttgttttttaggatttgtttggaaggagattgtgatacattggtgggtccaacttctcggtgacattactctgttgactttgctctgcaagcagaaagcactgtgacacattattgggcccaaccaacaaggtgagtctcctgcctgaagcctgcctacagtaatttgtaacacatggcattgggacatatctctgagcccatcaactatttgacaagattctccttttttaacaaaggctttgcccataggagagattttgacataattctgagcccagAAAATAGGT a score=44463.0 s hg17.chr17_random 2306474 564 + 2618010 gatgtttctttagtttttctgcttgagccccacattgtgatgtatttctggtcccaacaactgagggaagggaatctcctgtctgggtcttgcctacagggagacttgtgaaatatttccgcgttcatcaccttaaatatgtgaccctcatcttctg-cgtggccatgtttacagaagggagaatgggttattcctagacccagcacacagatcatgtgattctgcatcctggtctcttcagagggttcattttgacatatctccagactcatcaactagatgatgtgacggtcctcttctccctgaaacctatccata---------gtggagattgtgaaatacagcctggcacagcacctacatgatggtgctctcttctcatgcctgggtgctgcccacaggggtcattgtgac--atagctgggtacagtcttcaggtgatgtaactctcctctattttggggtgcacacacacagggcattaccatatagctctgctcctcagacctaggtgatgtgactctcctgtctgttacctcctcttagggggtattgtgatatattgctgggcc s panTro1.chrUn_random 63275983 574 + 240967748 gatgtttcttttg-ttttctgcttgagccccacattgtgatatattcctgttctcagcaactgagggaagggaatctcctgcctgggtcttgcatacagggagccttgtaaaatctttccaca-ccatcacctaacagatttgaccctcatcttctgccttggccatgtttacagaagggagagtgggttattcctagacccagcacacagatcatatgattctgcatcctggtctctctagaggggtcattttgacgtatctctagactcatcaactagataatgtgatgctcctcttctccctgaaacctatccatattgtgaaatatggagattttgaaatacagcctggcacagcacctacatgatggtactctcttctcatgcttgggcgctgcccacaggcatcattgtgacttatagctgggtacagtcttcaggtgatgtaactctcctctgtttttgggcccacacacacagggcattaccatatagctctgctcctctgacctaggtgatgtgactctcctgtctgttacctcctcttagggggtattgtgatatattgctgggcc a score=207692.0 s hg17.chr17_random 2309502 2565 + 2618010 aaaaGTTGAAAAACTGACTCTCATATGTGAGAGTCACAGATATGTTGATGACTCTCATATCATGAGTCGGCACACCTGTGAAGCCGTGATTTCAA-TTAGGGGAGAAagtctgcaagagaaaatggggctgccatgcacaaatttagtccactattgagatagtgacttgtgtacttagatcaaacatacagaaggtgttcactctcatgcgtaaaaccagAATATGTGCGGGATTCATCCCAtgtctagaacttcctgcaggtgtcattgtgacaaacatacacatttgtccagcacctgagtgagtagactctcctgtttaagcccagctcacaaataaaattgggacatatcattggacctagaacgtaggtgatgtggctctattctctcgactt-gtgctgcccacagggagcattgtaacatatcactgaacttaacacctaggagattgggggctcctgcctgaactctgcccacagggaggcagagcatatttctgccttgtagcatatttctgcctccatcaccagatgatgtgactctcctttctgcctgcaccttgcccacaggaaaaattctgacatatcactgggcctagtaatcagtaatcaggtgatgtgtctctcctgccatggctttacccacagggagtgtggtgacatatcactgagctcaatattcaggtgatttgactctgctgcttgtactctgatttcaggaggggattgtaacatatcccaggtgagcacacaagtgatgggactcccttcctagcctccgacctcataaaagattgttacatat-ccctggcccag-ccttaggtatgtga-ctctcctacctggtccctgc------------------------------------------------gactctcctgctcactccctacccacaggagagattgaaacatatatcttggccagctcacaggtgtaataatgactctcatacctcaaacctgccactaagagaaatgctgtttttcctagtgaggctttggaaaatcagtaggtcctaaatcttctctttgtatgagggtcttagaggaataccactctctcttatattatataaagcccttaaatggtacaaagagtgttaccacagggatatgttgcataacctaggggaggggtccagttatatgtcacaattagcccagggggcagggcacaggcatgaga--agaatctcaccacatatgtgctggcctaagtgatacatcatcatccccactgtggacaggtcgcagtaagaacaggagagtcacatcattcttataatggtctcagatatacatcacaatgactcccctgggcagaaagaagggataagagtcacatcacctgtgggctaggcccagagatgtcactcttacttctgtgggcatgtctcaggctggagaggagaatcacattacctaagcactggaccaagaaatacgtcacagtctttctcatgggcaaagtccaggtaagagaatagagccacatcaaatagttcatgggctcagagatatgtcactatgctccctgtgggcagggttcaggtaggacccttacattaccttggtgctggttcagcaatatgtcccaatgccttctaaggacagaacaaagacaaaagagtaaaatcattttggtgttttacccatcgatatgtcacaatcttccccgtgggcagaacctgaaaaaagggaagagtcatattagctaaatgctgcgcctagcgataagtcaaaattcaccctgtaagcagggactagacagaagatagagttacatcatctggtggctggtgcagggatacgccaccatgccctctctaggcaggatccagacaggagagctatgttgcctgtgttttggacccaaaaatatgtcacaaacgcccatggacagagcacaggaaagacaggcacataacctgaatatcaggttcagtggtatgtcccaatgcctcctgtgagcattccaaggcaggagaggagactcacattacctgtgtgcaagacccagtgatacgtcacacggaggagtaccactgtcttgcatattgtgtaaactatggtagagaaattgtcaccaaagggctcagcacactggtgagattatacttctcagattcacaccacaccaatattcaggatggtctctatcacatgtggagagagcccactcttgaggtcctgaattacacatgcagacatagtccacaactgggattctgactttcatatgtgaacatccagccacaggtgggatggtgactcatttttaaacgcagctcataggcagttaagaactcttatttggacccatccaagtagaaagatgttgactgtcataccagggcttaaagctaaaggtacaaggaggggtcc----------gtgcctgcttaaggtttcagagagaattgttacactcatgcatactctataaaggcttcatatggtgaagagagtgtcctgctagggcccagaacaaaggtgagattgtgat-actcatatgtacactgagcgaagagcaaaaattgtcatc-ttttcacatgaacacagcccaat-gttaaggttccgaatct-cacacctg s panTro1.chrUn_random 177634082 2611 - 240967748 AAAAGTTGAAAAATTGACTCTCATATTTGAGAGTCACAGATGTGTTGATGACTCTCAGATCATGAGTCAGCACACCTAGGAAGCTGTGATTTCAATTTAGGGGACAAAGTACGCAAGAGAAAATGGGGCTGCCATGCACAAATTTAGTccactattgagatagtgacttgtgtacttagatcaaacatacagaaggtgttcactctcatgcgtaaaaccagaatatgtgcgggattcatcccatatctggactttcctgcaggtgtcattgtgacaagcatacacatttgtccagcacctgagtgattagactcttctgtttaagcccagctcacaaataaaattgggacatatcattagacctagaacataggtgatgtggctctattctcttgccttcgtgctgcccacagggagcattgtaacgtatcactgaacttaacacctaggagattagaggctcctgcctgaactctgtccacagtga----------------gccttgtagcatatttctgcttccaacaccagatgatgtgactctcctttctgcctgcaccttgcccacaggaaagattctgacatatcactgggcccagtaatcagtaatcaggtgatgtttctctcctgctatggccttgccctcagggagtgtggtgacttatcactgagctcaatattcaggtgatttgactctgctgcttgtactctgatttcaggaggggattgtaacatatcccctgtgagcacacaagtgatgggactcccctcctagcctctgacctcagaaaacattgttacatatcccctggcccagcccttaggtatgtgacccctcctacctgttccctgccatcagggaagatattgacagatctcaggccaagcatcctggtgacgtgactctcctgctcactccctacccacaggacagattgaaacatatatcttggccagctcacaggtgtaataatgactctcatacctcaaatctgccactaagagaaatgctgtttttcatagggaggctttggaaaactggtaggtcttaagtcttccttttgtatgaaggtcttagaggaatacaactctctc--atattatataaagctcttaaatggt----agagtgttatcacagggATATGTTGCATAACCTATGGGAGgggcccagttatatatcacaattagcccagagggcagggcacaggcatgagaagagagtctcaccacatatgtgctggcctaagtgatacatcatcatccccactgtggacaggtcgcagtaagaacagaacagtcacatcattctaataatggtctcagagatacatcacaatgactcccctgggcagaaacaagggataagattcacatcacctgtgggctaggcccagagatgtcactcttacttctgtgggcatgtctcaggctggagaggagaatcacattacttaagcactggatcaagaaatacttcacaatctttctcatgggcaaagcccaggtaagagaatagagccatatcaaatagttcatgggctcagagatatgtcacaatgctccctgtgggcagggttcaggtaggacaatcacattaccttggtgcttcttcagcaatatatcccaaagccttctgatggcagagccaagacaaaagagtaaaatcattttggtGTTTTACAAATcgatatgtcacaatctaccccgagggcagaacctgaaaaaagggaagagtcacattagctaaatgctgcactgggtgataagtcacaattcaccctgtaggcagacactaggcagaagatagagtcacatcatctagtggctggtgcagagatatgccaccatgccctctctaggcagagttcagacaggagagttatgtcacctgtgttttggacccagaaatatgtcacaaaagcccatggacagagcacaggaaagacagtcacataacctgaatatcaggttcagtggtatgtcccaatgcctcctgtgagcattccaaggcaggagaggagactcacattacctgtgtgcaagacccagtgatatgtcacaaggaggagtaccactgtcatgcatattgtgtaaactatggtagagaaattgtcaccacagggctcaccacactggtgagattatgcttctcagatgcacaccccaccaatattcaggatggtctctatcacacgtggagagagcccactcttgaggtcctgaattacacatgcagacacagtccacagttgggattgtgactttcatatgtgaacatccagccacaggtgggatggtgactcatttttaaacacagctcataggcagttaagaactcttatttggacccatccaattagaaagatgttgactgtcataccagggcttaaagctaaaggtacaaggagggttccgcttaaggaggtgcctgcttaaggtttcagagaggatttttacattcatgcatactttataaagacttcatgtggtgaagagagtgtcctgacagggcctagaacaaaaac-agattgtgatcactcatatctactatgagccaagagtaaaaattgtcatctttttcacatgaacacagcccactggttgaggttccaaatctacacaCCTG a score=163260.0 s hg17.chr17_random 2312067 1812 + 2618010 ttgatctacctgctgatggaatagtctgtcaagagaaagcagagatgcacgagcatcaatctggaaaacagcaataatggtagtgtgcaccaggattcagatatcttcctagtattgttttctccaaacctctttattcgtaattcaccatttgtttcattgccattcgggcaactaggtagtaagaccattttctgctaagcaagagtaggtatacaagtaacaaatccctctggcctcctcctgaatagttcagagaacagattctagttcagccagctggctgctaacacccctcccttcctcagaaatgcttatgtttttaacaggattataagccacggcctcccagcatcgggtcccatcaatatatttggtggaatcatcagcaaaccaagcatgtctctgatcgtctgggcttggttctttaaaggatttgccccattgggcaggggaggtttccttccttatctgcaggacttgctcagtggtttgctgagctggcaagttttgcacatcctcatttaaaaatgatacctgttttggttccggcttagcctggtcttgtatgtgccatttccatttactttcttgagtgtaccctatccaatgaggtttgagggagttcatgacccaagtcatattaggaatttggggcctcataaaaacatcatgattaagacaaaggtgttctgtttcctgtaaagcccagtagcaggtcaacagctgcttctcaaagagtataagctttgctagcctctgacagcttctgggtctaaaaccccaaaggtatctcttcccatcttgtttctacctaaggctccaatgagcgtgttgatctaggacagttacttgcagttctactggcccatcctgtaagggccatactgttgctctgcttgtttggctggttgaaaagccacgctcactttctgtcttcagtgaaagtcatagcgttttctagtgactgcatgcagaggttgtaaaatgttacccaaatggggaatatgatgtctccagaatccaaacaaaccaatacaattttggacctccttttcagtggtagggctgcaaattctagtattttagccttagcctttggtaaaatggactgttt--ccctgcattccataggatgccaaggaacttta-cagtttgtggaggtccttgaattttactagggttaacttcccatccttgagataggatttgggtttttaccggatccaagccccagctgactagttcttcagttttaccctgactgggccactcaggcagctgcttttttcagcaataggctgataactttgaggctgatcagtcaagacataggcctggccatgggccagggccagcctggaagtcagattagcattttcttttctggcttacatttctgttgtagcagctgattcctatcttgacacattaacttataagcagtaagcaagcaccatccatgccgggaaattctctcagcatcccatttaccaactgggattccctgcacctcctcacacacagccaatgattcaaaatgcactaacttagattgcctattttcacaaacgtcagctcccttggaccactgaatggccaaggggaagaactaagggagttcccatctgaagatatggaaagtccccgagctcccagtctggtccctgcaccaaaaaatggcatgcttttgctttcggatcctgttcgtgaagccaaaaatgttctgcgcaggaaatgctcaaggagagaaggaaacacacacacacacacacacacacacacacacacacacacacaatacctttaagggt s panTro1.chrUn_random 25567862 1793 - 240967748 ttgatctacctgctgatggaatagtctgtcaagagaaagcagagatgcatgagcatcaatgtggaaaacagcaataatggtagtgtgcaccaggattcagatatcttcctagtattgttttctccaaacctctttattcgtaattcaccatttgtttcattgccattcgggcaactaggtagtaagaccattttctgctaagcaagagtaggtatacaagtaacaaatcccactggcctcctcctgaatagttcagagaacagattctagttcagccagctggctgctcacacccctcccttcctcagaaatgcttatgtttttaacaggattataagccacggcctcccagcatcgggtcccatcaatgtatttggtggaatcatcagcaaaccaagcatgtctctgatcgtctgggcttggttctttaaaggatttgcctcattgggcacgggaggtttccttccctatctgcaggacttgctcagtggtttgctgagctggcaagttttgcacatcctcatttaaaaatgatacctgttttggttccggcttagcctggtcttgtatgtgccatttccatttactttcttgagtgtaccctatccaatgaggtttgagggagctcatgacccaagtcataataggaatttagggcctcataaaaacatcatgattaagacaaaggtgttctgtttcctggaaagcccagtagcaggtcaacagctgcttctcaaagagtataagctttgctagcctctgacagcttctgggtctaaaaccccaaaggtatctcttcccatcttgtttctacctaaggctccaattagcgtgttgatctaggacagttacttgcagttctactggcccatcctgtaagggccatactgttgctctgcttgtttggctggttgaaaagccacgctctctttctgtcttcagtgaaagtcataccgttttctagtgactgcatgcagaggttgtaaaatgttacccaagtggggaatatgatgtctccagaatccaaacaaaccaatacaattttggacctccttttcagtggtagggctgcaaattctagtattttagccatagcctttggtaaaatggactgttttcccctgcattccataggatgccaaggaactttagcagtttgtgcaggtccttgaattttactagggttaacttcccatccttgagataggatttgggtttttaccggatccaagccccagctgactaattcttcagttttaccctgactgggccactcaggcagctgcttttttcagcaataggctgataactttgaggctgatcagtcaagacataggcctggccatgggccagggccagcctggaagtcagattagcattttcttttctggcttacatttctgttgtagcagctgattcctatcttgacacattaacttataagcagtaagcaagcaccatccatgccgggaaattccctcagcatcccatttaccaactgggattccctgcacctcctcacacacagccaatgattcaaaatgcactaacttagattcccaattttcacaaaggccagctcccttggaccactgaatggccaaggggaagaactaggggagttcccttctgaagatatggaaagtccccgagctcccagtctggtccctgcaccaaaaaatggcatgcttttgttttcggatcctgttcgtgaagccaaaaatgttctgtgcaggaaatgctcaaggagagaaggaaacacacacacacacacacaca----------------------atacctttaagggt a score=229597.0 s hg17.chr17_random 2313879 3336 + 2618010 aaacaaactgtatcccacgtaaatggcaatgcagatataataagcaaatgatataataagcaagttgcaatgggacggagagaagggaaaagagatatatatat--ttacactcatcagactatggaggattcaccaccagactgcgaagcaacagactgggctccagagttggccacttgtccgtgaacagatgagaagagatctcatgaagttttggcacagtctggaactctagctctttttgtaatgagttatctggcatgacgtccagtcaggagggcccttcatttctgggctcaaggaaaagaaaaaggtcaacttgtttttttgattgtctgttgtttttcagtaactaacatataggaataaattgaaatagagatttatccgaaacagcgctggatgaaagcctcaaggggctcacacaacctgttccaggacttggtgaccattgtttgagtcca--gattcaattgagttcaaatttaatatttaaattttactccacaAAGTGTCAAAAGTAATTCCTTCAAATGCAGGAAATTATGTAACTACTCACAAACTAAACTTCTCAACCAAAAGTCATAAATTGAGTATAGGAATTAAAAAAAAAAAGAAAGAAAATCTAACTACATCTGTCTA-AAGGGACTCAatttattta----tttatttattttagagacttggtattgctttgtttcccaggctggtctcaaactcctggtttcacgtgatcctcccacctcaatctcctaaaatgctaggatgacagatatgagccatcTTACTCTATAGTAACAAAAACAGACTAAATGTGGCAAGATGCATCCAAAAAA--TTATGCAAATCATAACCAAATGAGGACAGACTATGTCACA-----ATTATAGTATGCAAAATGCTTTTTAAATAACTGTCTTAGTTTATAAAATATATTATGAAATCAAATTGTCAGA-AAAACAAAGGACAAAATAATAAAAGGGTTTATTCACTGGAAACCTATGACAATTATACACATTTACATAAT---------------TGTGTGTATATATCTAATTATGTAT----TCACACCaatatgtatgcaccttacatgagtatttttaaatatctcaataatatcttgacagaacataagc-aaaaacggcaatatattaaaagtataatattttaatacaccagttctgtaattaataaaaaagccagatagaatattaaaaagtaaacagacgacatgaaaatactgtaaagcaattagatataacagatgcatacagaacactctacacaaaaacaaaactcacaatcttctcaaaagctcatgaaacattctcctaaaaataactatgaagccaaaaaacaattctgaacagaatttttgaaaaattgaatgttacaaaaaa---ttc-aaaaaatcaatgaatatagga-----gttatttttttgaaaagatcaacaaaatagact-----gctagcaagactaata---aagaaaagagagaagaatcaaagagaagcaataaaaaatgataaaggggctatcacccctgatcccatagaaatacaaactaccatcagagaatgttataaacacctctacgcaaataaactagaaaatctaggagaaatgggtaaattcctgg--acatatacatcccccacaagactaaacaaggaagaagttgaatctctgaatagaccaataacaggttctgaaattgaggcaataattaatagcctaccaaccaaaacaagtcgaggaccagacggattcacagctacattctaccagaggtacaaaggggagctggtaccaacccttctgaaactattc-caatc-aatggaaaaagagggaa-tcctctctaactcattttatgagaccagcatcatcctgataccaaagtctggcaaagacacaacaaaaagagaaaattttaagccaatat-tcctcatgaacatcgatgcaaacattctcaataaaatactggcaaaccgaatcaggcagcacttcaaaaagcttaaccaccaagatcaagtgtgcttaatccctgggatgca-----ggttcaacatatgcatatcagtaaacataatccatcacataaacagaacaaatgacgaaaaccacatgattatctcaatagatgcagaaaaggccttcgaaaaaattcaacagcctttcatgctaaaaaatgctc--aataaactagatattgacagaatgtacctcaaaataataggaactatttatgacaaactcacaaccaatatcatgcagaatgggcaaaaactggaagcactccctttgaaaaccggcacaagacaagaatgtcctctctcatcactcctattccacatagtgttggaagttatggccagggcaatcaggcaagagaaagaaataaagcatattcaactagg-aaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaactccgtcgtctcagccaaaaatctcct--aagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaaacattccta-----caatacca----tacagagagtcaaatcctgagtgaactcccattc-acaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctctttaaggagaactacaaaccactgctcaacgaaataaaagaggacacaaacaaatggaagaacattccgtgctcatggaaaggaagaatcaatattgtgaaaatggccatgctgcccaaggtaatttatggattcaatgtcatccccaccaagctaccattgactttcttcacagaattgg-aaaaaactaccttgaagttcatatggaaccaaaaaagagcccgcatagtcaagacaat-cctaagcaaaaagaacaaagttggaggaatcgcgctacctgacttcaatctataatacaaggctacagcaaggaaagcagcatggtactggtaccaaaacagatacatagaccaatggaacagaacagaggcctcagaaataacaccaaacatctacaaccatccgatctttgaaaaaaactgacaaaaacaagcaatggggaaaggattccttatttaataaatggtgctgggaaaactggctggccatatgcagaaaactgaaactggatcccttccttacactgtatacaaaaattaagtgaaaatggattaaagacttaaatgtaagacctaaaaccataaaaacttacaagaaaacctaggcaatac---------cataggcatggacaaagacttcatgactaaaacaccaaaagcaatggcaac-aaagccaaaattgacaaacgggacctacttaaactaaagagcttct s panTro1.chrUn_random 177641222 3375 - 240967748 aaacaaactttatcccacttaaatggcaatgcagatataataagcaaat---ata-taagcaagttgcaatgggacggggagaagggaaaagatatatatatatatttacactcaccaaactatggaggattcaccaccagactgtgaagcaacagcctgggctccaga-ttggccactcttccgtgcccagacgacgtgagatctcatgaagctttggcgcagtctggaaccccagctctttttgtaatgagttatttggcatgaagtccggtcaggaaggctcttcacaacggggctcaaggaacacaaaaaggtcaacttgtttttttgattgtctattgtttttcaataactaagatataggaataaattgaaatagagatttatctgaaacagcgctggatgaaggcttcaaggggctcacacaacctgttccgggacttggtgaccattgtttgagtccactg-ttcaattgagttcaaatttaatatttaccttttacttcacaAAGTGTCAAAAGTAATTCCTTCAAATGCAGGAAATTATGTAGCTACTCACAAACTAAACTTCTCAAACAAAAGTCATAAATTGAGTACAGAGAT-----AAAAAATAAAATAAAATCTAACTACATCTGTCTACAGGGGATTCAatttatttatttttttatttattttagagacatggtattgctttgtttcccaggctggtctcaaacttctgggctcaagttaacctccaacctcaatctcctaaaatgcttggatgacagatatgagccatcTTACTATATAGTAACAAAAACAGACTAAAAGTGGCAAGATGCATCAAAACAATTTTATGCAAATCGTAATGAAATGAAGACA----ACGTCACAAGCACATT----TATGCAAAATACTTTTTAAATAACTGTCTTAGTTTATAAAATAAACTATAAGTTAAAACTGTCAAAGAAAACAAAGGACAAAATAATAAAAAAGTTTATTCACTGGAAACCTAGGAAAATtatatacatttatataatatacatttatataactgtgtgtatttatctaattatgtatacagacacac--atatatatGAACCTCACATGAAGATTTTAAAATAAATCAATAATATTTTGTCAGAACATAAACAAAAAACTGCAATATACTGAGA--ACAATattttaatacaccagttctgtaattaataataaagccagagagaatgttaaaaagaaaacagaggacatgaaaatactgtaaaacagttagatgtaacagatgcatagagatcactctacacaacaacaaaactcacagtcttgtcaaaagctcataaaactttgtcctaaaaataaatataagg---aaaaaaaatttttaacagaa-tttaaaaaaattgaatgttacagaaaacacttcaaaaaaatcaatcaacacagaaagccgg----ttttttgaaaagattaacaaaataga-tagatggctattaagacaaataaagaagaaaagagagaagaatcaaagagacacaataaaaaacgacaaaggggatatcaccaccaaacccacagaaatacaaactaccatcagagaatactataaacacctctacggaaataaactggaaaacctagaagaaattgataaattcctggaaacatccacacctc---caagactaaacgaggaagaagttgaatctctgagtagaccagtagcaggttctgaaattgaggcaataattaatagcttacgaaccaaaaaaagtccaggaccagacgaattcacaactgaattctaccagaggtacaaagaggagctgctaccatcccttctgaaaatattcgaaatcaaatagaaaaagagggaattcttccttaactcattttatgaggtcagcatcctcctgataccaaagcctggcagagacacaacaaaaaaa-------------caatatcccctgatgaacatcaatgcaaacatcctcaataaaatactgacaaaccaaatccagcagcacatccaaaagcttatccaccacgatcaattcagcttcatccctgggatgcaagcctggttcaacatatgcaaatcaataaacataattcatcacataaacagaaccaatgacaaaaatctcatgactatctcaatagatgcagaaaaggccttcaacaaaactcaacagcctttcatgataaaaa---ctctaaataaactaggtattgatggaacatatctgaaaataataagagctatttatgacaaacccacagccaatatcatgcagaatgggcaaaacctggaagcattccctttgaaaaccagcacaagacaacgatgccctctctcaccactcccactcaacatagtattggaaattctggccagggccatcaggcaagagaaacaaataaaggacattcgattaggaaaaagaggaagccaaattgtctctgtttgcagatgacatgattgtatatttagaaaaccccattgtctcagcccaaaatctccttaaatctgataagcaacttcagcaaagtctcaggatacaaaat-aatgtgcaaaaatcacaagtatttccatacaccaataacagacgaacagagagccaaattatgagtgaactcccactcaacaattgctacaaagagaataaaatacctaggaatccaacttacaagggatgtgaagggcattttcaaggagaactacaaaccactgctccatgaaataaaagaggacacaaacaaatggaagaacattccatgctcctggaaaggaagaatcaatatcatgaaaatgaccatgctgcccaagataacttacagattcaatgctatccccatcaagctaccactgactttcttcacagaattggaaaaaaactactttgaagttcacatggaaccaaaaaacagcctgcataggcaagaaaatccctacgcaaaaagagaaaagctggaggtatcacactacctgacttcaatctatactacaggtctacagtaaccaaaacagcacggtactggtaccaaaacagatatatagatcaatggaaaaaaacagaggcctcagaaataccaccacacatctacaaccattggatc-ttggacaaatgtgacaaaaacaaacaatggggaaaggattccttatttaataaatgttgctgggaaaaatggcgagccatatgcagaaaactgaaactggatttcttccttacaccctatacataaattgactcaagatggattaaagacttaaatgtaagacccaaaaccataaaaacctaagagaaaacctgggcaataccattcaggacataggcatgggcaaagacttcatgactaaaacaccaaaaacaatagcaacaaaagccaaaatatacaaatgaaatctaattaaacttaaaagcttct a score=52944.0 s hg17.chr17_random 2317215 600 + 2618010 TGTAAAgggcccgctaggcatacccaaagcgggcagaaggctcctcaggggaaggtaaggtttgagggagtgcaggtgaggcacctgtggcagaaaaa-aaaaaacgcaaaaca---aaaaaaaaaaattcgccgccaagaagcgttcctggttcccccacggacgaaagtgccttcccatcagtccctgcactgggccttggatactctggcgtccctggttcgaacccagggagcgactcaggcccgctaggggtaccccaaagcgggcagaaggcccctgaggggaaggttaggtttgaggaaagggaggtgaggcacctgtggatgaaaaaaaaaaaaagaaaaaaactcagcgtcgagacgcattcctgggtcccccacggaagaaagtgccttcccatcagtccctgcgctgggccccggtgaccctggcgtccccggttcgaaccaagggtgcgtctcgggcccgctaggggtaccccaaagcgggaagaaggtccttgaggggaagttaaggtttgagggaggggagatgaggcacctgtggcagg--aaaaaaaaaaaccgcgccgccaagaagcggagactgggtcccccaaggac s panTro1.chrUn_random 25572989 605 - 240967748 TGTAAAgggcccgctaggcgtacccaaagcgggcagaaggctcctcaggggaaggtaaggtttgagggagtgcaggtgaggcacctgtggcagaaaaagaaaaaacgcaaaacaaacaaacaaaaaaactcgccaccaagaagcgttcctggttcccccacggacgaaagtgccttcccatcaatccctgcactgggccttggagactctggcgtccctgattcgaacccagggagcaactcaggcccactaggggtaccccaaagcgggcagaaggcccctgaggggaaggttaggtttgaggaaagggaggtgaggcacctgtggatg-aaaaacgaaaaagaaaaaaactcagcgtcgagacgcattcctgggtcccccacggaagaaagtgccttcccatcagtccgggcgctgggccccggtgaccctggcgtccccggttcgaaccaagggtgcgtctcgggcctgctaggggtactccaaagcgggcagaaggtccttgaggggaagttaaggtttgagagaggggagatgaggcacctgtggcaggaaaaaaaaaaaaaccgcgccgccaagaagcggagcctgggtcccccaaggac a score=331184.0 s hg17.chr17_random 2317815 3698 + 2618010 gaaagtgccttcccatcagcccccgcgcatggccccgtgaacctggcgtccctggttcgaacccagggtgcgtctcgggcccgctaggggtactccaaagctagcagaaggcccttgaggggaaggttaggtttgagggaggggaggcacctgtggcaggaaaaaaaaaacaaaccgagccgtcgagaagccgagactgggtcccccagggacgaatgtgccttcccatcagcctctgctctggg-cctggggaccctggcgtcactggttgaacacaaggagcgtctcgggcccactagggatacctcaaagtgggcagaaagcccc-tgcggggaaggtaaggtgtgagggagaggaggtgagtcacc-tgtggcacaaaaaaaaaaaaaaaaa-----------cgcgccaccgagaagcgttcctgggtcccccacggacgaaagttccttcccatcagcccctgtgctggaccgcggggaccctggcgtccctgcttagaacccacgcagcgtctcgggccggctaggggtacaccaaagcggacaaaagccactgaggggaaggtaagctttgagggaagggaggtgaggcacccgtggcaggaaataaaaaaaaaaa--gcgccccggagaaccggggcctgggtcccccacggacaaaagtgccttcccatcagtccctgggttgggctccggttaccatggatcgccggttccaactcagggccctctcgggcccgctaggggtaccacaaagcgggcagaaggcccctgaggggaagttaaggtgtgagggaggggtggtgaggcagctgtagcagaaaaaaaaaggaaaaaacagcgcgcctccgagtagcgttcctgggtccttctcggaagaaagtgccttcccatcagcccctgcgcatggccccgggaccctggtgtccct---tcgaacccagggagaatctcggcccgctagggtttccccagtgcgggcagaaggcccctgaggggaaggtggggtttgagggagggaaagtgcagcacctgtggcaggaaaaaaaacaaaacagaa------ctcgccaccaggaagcgttcctgggtcctgcacgcacgaaagttccttcccttcaatccctgcgctgggacccggggaccctggcgttcctgattccaacccagggagggcctcgggccagctaggggtatcgcaaagtgggcagaaggcccctgaggggaaggttaggtttgagggaggggatgtgaggcacctgtggcaggaaaaaaaaaaa--------tcgcgccgccgagaagcggggcctgggtcccccatgcacgaaactgccttcccttcaacccctgctctgggtcccagggaacctggcgcccctgattcgaacccatggagcttctcgggcccgctaggggtaccccaaagcgggcagaaggcccctgaggtgaaggtaagatttgagggaggggaggtgaagcacctgtgtcaggaaaaaaaaaaaaaaaaatcaaccgcgctgccgagaagcgttcctaggtcttccacggacgaaagtgccttcccatcagcccctgcacatggccccggaccctggttcgaacccagggagcgtctcggtcccgctatgtgtaccccaaagcgggcagaaggcccctgaggggaaggttaggtttgagggaggggaggtgagtcacatgtggcagggaaaaaaaagaaaaaaaaagaaaa-aaaaacctcacagccgagaagcggggcctgtgtcccccatgcacgaaagtgccttcccatcagccctcgctcacagccccgggaccgtagcgtacctggttcgaaaccagggtgcaaacaaaactattatcagattgaacaggcaacctacagaatgggagagaatttttgcaatctacccatctgacaaagggctaatatcaggaatctacaaatagctaaaacaaatttacaagaaaaaaaaacaaccctatcaaaaagtggggaaaggatataacagacacttttcaaaggaagacatttatgcagccaacagacatatgaaaaattgctcatcattggtcatcagagaaatgcgaatcaaatccacaatgagatatcatctcacgccagttagaatggcgatctttaaaatttcaggaaacaacagatgctggagaggatgtggaaaaatagaaacacttttacactgtgggtaggagtgtaaattagttcaaccattgtggaagacagtgtggtgattcctcagggatctagaaccagaaataccttttgactcatcaatcccattactgggtatatacccaaagagttataaatcatgctactataaagacacacacacacatatgtttattgcggcattattcacaataacaaagtcttggaaccaacgcaaatgtccatcaatgatagattg-gattaagaaattgtggagcatatacagcatggaatactatgcagccataaaaaggatgggttcatgtcctttacagggacatggatgaagatggaaaccatcattctcagcaaactatcacaaggacttcaaaccaaacaccgcatgttctcacttataggttggagttgaa-caatgagaacacatggacacagggcggggaacatctcacattggggcct-gtttgggggtgacggactatgaaaggaatagcgttaggagaaatacctaatgtaaatgatgagttgatgggagcagcaaaccaacatggcacatgtatacctgtgtaacaaacctgcacgttctgcacatgtaccctagaacttaaagtataataaaaaaaTTGaatgttacatactataatttctgaccaaaaaggattaaaactagcaatcgataacagaagaaaattcatacaattcacaaatatgtaaaaattaagcaatttactcttgaacaTGCTTTtgttcaagagttagaaaacttactattttgaacatgtctataatgccaaaagtgacctacagatttaatacaatccctataaaattcttaattttatttttgacagatacagaaaatgtgactcccaaaagtatatggaatttcaggagaccacaaagaactctacagttttcaaaaagagaaaaattttggaaacattacagttcctgttttcaaaacctgttacaaatctacagtaatctaagtagtttgttactggcataaagacagacaaatagactaataaaaccgagtgcaaaaaagatgtaaacgctcacgtatttattgtagctttacttacaaaaatcaataggttaaagcaatccatacttccctcaacaaacaaatgaatgggtacaatttggaatataaaaacaatagaatattacccagcttttgaaaagcagaaaaccttttatctataataaaaataaaatcttgatgacattatgctaaataaaataagccagctacaagacagatactgagtgtatccacatgtataaaatatctaaagtagtaacatccttagaaacagagaataagatagcatttgtaaagggctgaacaaaggagaagacaggcagttgtttcaggtgtattgagttttagttttgtaagataaaaatgttctagagatacgtcgaataatgtcaatgtgctgaaaagtctaaactatataattattgtcattgtaaattattgtaaaattgtaaataattgtcaattttatatgtttcttataacaatgt s panTro1.chrUn_random 25573822 3730 - 240967748 gaaagtgccttcccatcagcccccgcgcatggccccgggaacctggcgtccctggttcgaacccagggtgcgtctcgggcccgctaggggtactccaaagctagcagaaggcccttgaggggaagcttaggtttgagggaggggaggaacctgtggcaggaaaaaaaaaacaaatcgagccgtcgagaagccgagactgggtcccccacggacgaatgtgccttcccatcagcctctgctctgggtcccggggaccctgtcgtcactggttgaacacaaggagcgtctcgggcccactagggatacctcaaagtgggcagaaggccccctgcggggaaggtaaggtgtgagggaggggaggtgagtcaccctgtggcacaaaaaaaaaaaaaaaaaaaaaaaaaaaacgcgccgccgagaagcgttcctgggtcccccacggacgaaagttccttcccatcagcccctgtgctggaccgcggggaccctggcgtccctgcttagaacccatgcagcgcctcgggccggctaggggtacaccaaagcggacaaaagccactgaggggaaggtaagctttgagggaggggaggtgaggcacccgtggcaggaaaaaaaaaaaaaaaaagcgccccggagaaccggggcctcggtcccccacggacaaaagtgccttcccatcagtccctgggttgggctccggttaccatggatcgccggttccaactcagggccctttcaggcccgctaggggtaccacaaagcgggcagaaggcccctgaggggaagttaaggtttgaaggaggggtggtgaggcagctgtagcaggaaaaaaa-ggaaaaaacagcgcgcctccgagtagcgttcctgggtccttctcggacgaaggtgccttcccatcagcccctgcgcatggccccgggaccctggcgtccctgttttgaccccagggagaatctcggcccgctagggtttccccaatgcgggcagaaggccccagaggggaaggtggggtttgagggagggaaagtgcagcacctgtggccggaaaaaaaaaaaaaaaaaaaaaaaactcgccaccaggaagcgttcctgggtcccgcacgcacgaaagttccttcccttcaatccctgcgctgggacccggggaccctggcgttcctgattccaacccagggagggcctcgggcccgctaggggtatcgcaaagtgggcagaaggcccctgaggggaatgttaggtttgagggaggggatgtgaggcacctgtggcaggaaaaaaaaaaaaaaaaaaatcgcgccgccgagaagcggggcctgggtcccccatgcacgaaactgccttcccttcaacccctgctttgggtcccagggaacctggcgcccctgattcgaacccatggaacttctcgggccagctaggggtaccccaaagcgggcagaaggcccctgaggtgaaggtaagttttgagggaggggaggtgaagcacctgtgtcaggaaaaaaaaaaaaaaaaa--aaccgcgccgccgagaagcgttcctgggtctcccacggacgaaagtgccttcccatcagcccttgcacatggccccgtaccctggttcgaacccagggagcgtctcggtcccgctatgggtaccccaaagcgggcagaaggcccctgaggggaaggttaggtttgagggaggggaggtgagtcacaagtggcaggggaaaaaaa--aaaaaaaagaaaagaaaaacctcacagccgagaagcggggcctgtgtcccccatgcacgaaagtgccttctcatcagcccttgctcacggccccgggaccgtagcgtacctggttcgaaaccagggtgcaaacaaaactattatcagattgaacaggcaacctacagaatgggagagaatttttgcaatctacccatccgacaaagggctaatatcaagaatctaaaaatagctaaaacaaatttacaagaaaaaaaaacaaccccatcaaaaagtgggcaaaggatataacagacacttttcaaaggaagacatttatgcagccaacagacatatgaaaaattgctcatcattggtcatcagagaaatgcgaatcaaatccacaatgagataccatctcacgccagttagaatggcgatctttaaaatttcaggaaacaacagatgctggagaggatgtggaaaaatagaaacacttttacactgtgggtaggagtgtaaattagttcaaccattgtggaagacagtgtggtgattcctcagggatctagaaccagaaataccttttgactcatcaatcccattactgggtatatacccaaagagttataaatcatgctactataaagacacacacacgcatatgtttattgcggcattattcacaatagcaaagtcttggaaccaaccaaaatgtccatcaatgatagattgagattaagaaattgtggagcatatacagcatggaatactatgcagccataaaaaggatgggttcatgtcctttacagggacatggatgaagatggaaaccatcattctcagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcacttataggttggagttgaatcaatgagaacacatggacacagggcggggaacatctcacattggggcctagtttgggggtgagggactatgaaaggaatagcgttaggagaaatacctaatgtaaatgatgagttgatgggagcagcaaaccaacatggcacatgtatacctgtgtaacaaacctgcacgttctgcacatgtaccctagaacttaaagtataataaaaaaaTTGaatgttacatactataatttctgaccaaaaaggattaaaactagcaatcgataacagaagaaaattaataaaattcacaaatatgtaaaaattaagcaatttactcttgaacaTGCTTTtgttcaacagttagaaaacttaatattttgaacatgtctataatgccaaaagtgacctacagatttaatacaatccccataaaattcttaattttatttttgacagatacagaaaatgtgactcccgaaagtatatggaatttcaggagaccacaaagaactctatagttttcaaaaagagaaaaattttggaaacattacaattcctgttttcaaaacctgttacaaatctacagtaatctaagtagtttgttactggcataaagacagacaaatagactaataaaacagaatgcaaaaaagatgtaaacgctcacatatttattgtagctttacttacaaaaatcaataagttaaagcaatccatacttccctcaacaaacaaatgaatgggtacaatttggaatataaaaacaatagaatattacccagcttttgaaaagaagaaaaccttttatctataataaaaataaaatcttgatgacattatgctaaataaaataagccagctacaagacagatactgagtgtatccacatgtataaaatatctaaagtagtaacatccttagaaacagagaatgagatagcatttgtaaagggctgaacaaaggagaagacaggcagttgtttcaggtgtattgagttttagttttgtaagataaaaatgttctagagttatgtcgaataatgtcaatgtgctgaaaagtctaaactatataattattgtcattgtaaattattgtaaaattgtaaataattgtcaattttatatgtttcttataacaatgt a score=6624.0 s hg17.chr17_random 2321513 56 + 2618010 aaacaaTAAT-----AATATCTAAGTGAGATACCGTTTTAATGCATTTCAATAATTATCTT s panTro1.chrUn_random 25577552 56 - 240967748 aaacaaTAAT-----AATATCTAAGTGAGATACCGTTTTAATGCATTTCAATAATTATCTT s canFam1.chr4 31566585 57 - 91326168 aaGCGATAACTGGCAAATATTCATATGTTATA----TTAACTACATTTAAATCACTTACCT a score=291.0 s hg17.chr17_random 2321569 3 + 2618010 CAG s panTro1.chrUn_random 25577608 3 - 240967748 CAG a score=1911.0 s hg17.chr17_random 2321572 5 + 2618010 GACCT s panTro1.chrUn_random 25577611 5 - 240967748 GACCT s rn3.chr2 79988142 5 + 258222147 GACCG s canFam1.chr16 24337627 5 + 60307850 GGCCT a score=100571.0 s hg17.chr17_random 2321577 199 + 2618010 CGGCAAAACCTGAGTCCTGTCCTCTCGCTT-----TC---CTCCCCGTACACAGCGAGCTTCACCACTTGCTCCG-CACCTTCTCCATCAACTACTACCTGTCCCTGGGATCTGTCCAGTCGCCCAGCTAAAGTGCTCAGCAGGTCAGCAG---CGCGGCGAGCTTCTATG-AGGCG-TGGGGTCTGGGGCTCCTGGATCTCTGTGTCCCATT s panTro1.chrUn_random 25577616 200 - 240967748 CGGCAAAACCTGAGTCCTGTCCTCTCGCTT-----TC---CTCCCCGTACACAGCGAGCTTCACCACTTGCTCCG-CACCTTCTCCATCAACTACTACCTGTCCCTGGGATCTGTCCAGTCGCCCAGCTAAAGTGCTCAGCAGGTCAGCAG---CGCGGCGAGCTTCTATGCAGGCA-TGGGGTCTGGGGCTCCTGGATCTCTGTGTCCCATT s mm5.chr13 2036423 203 - 116458020 CGGTGGAACTCCTGTCCTGTTCTCTCGCTTCACTCTC---CTCTTCAGACAAAATGAGCTTCACCACCCGCTCCACCACCTTCTCCACCA---ACTACCGGTCCCTGGGCTCTGTGTCGACTCCCAGCCAGCAGGTCCGGCCTGCCAGCAG---TGCAGCCAGCGTCTATGCAGGTGCTGGGGGCTCCGGTTCCC-GATATCCGTGTCCTGCT s rn3.chr2 79988147 204 + 258222147 CAGCGGAACTCCAATCCTGGTCTCTCGCTTCACTCTC---CTCTCCAGACAAGATGAGCTTCACCACCTGCTCCACCACCTTCTCTACCA---ACTACCGGTCCCTGGGCTCTGTGAGGACTCCCAGCCAGCGGGTCCGGCCTGCCAGCAG---CGCCGCCAGCGTCTATGCAGGTGCTGGGGGCTCAGGGTCCCGGATATCCGTGTCCCGCT s canFam1.chr16 24337632 206 + 60307850 GGCTCAAGCCTGAGCCCTGGCCTCCTGTGTCACCCTCTTACTCTCCAAACAGCACGAGTTTCACCACCCGCTC---CACCTTCTCTTCCA---ACTACTGGTCCCTGGGCTCTGTGCAGTCGCCCAGCCGCTGTGTCTGGCTGATCAGCAGCAACATGGCCAGTGTCTATGTAGGCA-CAGGGGCTCAGACTCCTGGATCTCTGTATCCTGCT a score=1213.0 s hg17.chr17_random 2321776 3 + 2618010 TCA s panTro1.chrUn_random 25577816 3 - 240967748 TCA s mm5.chr13 2036626 3 - 116458020 CCA s canFam1.chr16 24337838 3 + 60307850 CCA a score=697.0 s hg17.chr17_random 2321779 2 + 2618010 CA s panTro1.chrUn_random 25577819 2 - 240967748 CA s mm5.chr13 2037549 2 - 116458020 CA s rn3.chr2 79989299 2 + 258222147 CG s canFam1.chr16 24338801 2 + 60307850 CT a score=103349.0 s hg17.chr17_random 2321781 238 + 2618010 GAGATTGCCACCTACTGCCGCCTGCTAGAAGATGGGGAGGACTTCAATCT------TGGTGGTATTCTGGACAGCAGCAAATACCTGTAAAGCATCCAAAAGACCAACACCCACAGGATAGTGGACGGCAAAGTGGTGTTTGAGACCAACATCACAGACGTCTTGAGGTGCTAAACCAGCAGAAGCAAGGTCCCTTTGCGGAGCAGGAGGGCAATAAAAACTTCTGTGGTCa---aaaaaaaaaaaa s panTro1.chrUn_random 177646632 224 - 240967748 GAGATTGCCACTTACTGCCGCCTGCTAGAAGACGGGAAGGATTTCAATCTCCCGGATG------CTCTGGACAGCAGTAAATACCTGCAAGCTATCCAAAAGAACAGCCCCCACAGGATAGTGGACGGCAAAGTGGTGTCTGAGACCAACAATACAGACGTTTTGTTGTGGTAAGCCATGAGAAGCAAGGTCCCTTTGGGGAGCAGGAGGCCAGTAAAAAGTTCAGAGGT----------------- s mm5.chr13 2037551 236 - 116458020 GAGATTGCCACCTACTGTCACTTGCTGGAGGATGG---AGATTTCAGTCTCAACAATG------CCCTGGACTCTAGCAACTCCATGCAAACTGTGCAGAAGACAACTACCCGTAAGATCATAGATGGCAAAGTAGTGTCCAAGACTAATGACACCAGAGTTCTGAGGTACTGGGGCAG-AGAAAGAGGGAACCCCTGGGGACTGAGGGATCAAT-AAAAGTTGAGAGCTCACTGGAAAAAAAAAAA s rn3.chr2 79989301 236 + 258222147 GAGATTGCCGCCTACCGCCGCTTGCTGGAGGATGGGGATGATTTCAGTCTCAACGACG------CCCTGGACTCCAGCAACTCCATGCAAACTGTCCAGAGGACAACTACCCGTAAGGTCGTGGATGGCAAAGTGGTGTCCGAGACCAATGATACCAGAGTTCTGAGGCACTAAGGCTC-AGAAGAAGGGAACCCCCTGGGACTGAGGGACCAAT-AAAAGTTGAGAATTCACTGGAAAAAAAA--- s canFam1.chr16 24338803 230 + 60307850 GAGATTGCCACCTACTGTCGCCTGTTGGAAGACAGGGAGGACTTCAGTCTTACTGATG------CCCTGGACAACAGTAACTTCTTGCAGACAATCCAGAAGACCACCACCTGCAAGACGGTGGACAGCAAGGTGGTGTCTGAGACCAACGACACCAAAATTCTGAGGCGTAGAGGCAGCAGAAACAGGGA--------GGAGCAGGAGGCCAATAAAAAGTTCAGAGGTTAAAAAAAAAAAAA--- a score=1638.0 s hg17.chr17_random 2322019 3 + 2618010 aaa s panTro1.chrUn_random 177646856 3 - 240967748 AAA s mm5.chr13 2037787 3 - 116458020 AAA s canFam1.chr16 24339033 3 + 60307850 AAA a score=3565.0 s hg17.chr17_random 2322022 9 + 2618010 aaaaaaTTA s panTro1.chrUn_random 177646859 9 - 240967748 AAAAAATTA s mm5.chr13 2037790 9 - 116458020 AAAAGATCA s canFam1.chr1 18327405 9 - 124897793 AAAACATCA a score=1279.0 s hg17.chr17_random 2322031 11 + 2618010 CCCCCGCATCA s panTro1.chrUn_random 177646868 11 - 240967748 CCTTCAAATCA s canFam1.chr1 18327414 11 - 124897793 CCTTTAATTCA a score=7815.0 s hg17.chr17_random 2322042 38 + 2618010 CAGAGGTGTTTTCCTCA-CGCAAACGTAATATAGATTCA---- s panTro1.chrUn_random 177646879 39 - 240967748 CAGAAGTGTTTCCTTCAACACAAAAGTAATATAGATTCA---- s canFam1.chr1 18327425 40 - 124897793 AAGAGATATTTTTTTCA---CAAAGGGAATATATGTTCATCCT s fr1.chrUn 323272765 38 + 349519338 CAAATGTGTTTCTCCCA-TGCAAAAATCACATATATTCA---- a score=2296.0 s hg17.chr17_random 2322080 4 + 2618010 TTAA s panTro1.chrUn_random 177646918 4 - 240967748 TTAA s canFam1.chr1 18327465 4 - 124897793 TTAA s fr1.chrUn 323272803 4 + 349519338 CAAA s danRer1.chrUn 349887742 4 - 367113659 TTAA a score=25790.0 s hg17.chr17_random 2322084 301 + 2618010 TACATAGATGTGGAAA---------------------------------TTAGGGCAATTTCC--ACAACTACTCACCCAGAGAGGATTAAAAAAATAATTGACCACCAACTAATTAAATAAATACAG-------------------AAGTCATAAA-TAAAGCATGAGTA---------ATGTTTATACAGTCAAACGAACAGAGAATTATGTTTG-------------------CAATACACATATGGTTGATTCA-TATTTGACTTTTT----TTCTACACTCTTTTAAAGTGTACA-CAG--TTAAATATAGTCATAAAAAATTATAACATATAAGCAGAAACTAAAAACACAATTAAATGATGTAAGACAGCCTATCCTAACAGGAA s panTro1.chrUn_random 177646922 294 - 240967748 CATATAGAAGTGGAAA---------------------------------TTAAGACAATTTCC--ACAACTACTCACCCAGAGAGGATTAAAAAAATAATTGACCACCAACTAATAAAACAAATACAC-------------------AAGTCATAAA-TAAAGAATGAGTA---------ATGTTTATACAGGCAAATGAACAGAGAATTATGTTAG------------------GCAATAGACGTGTGGTTGATTCA-TATTTGACTGATTCATATTCAAC------------TGTACA-CAG--TTGAATATAGTCATACAAAATTATAATATATAGGCAGAATCTAAAAACACAATTAAATAATGTAAGGCAGCCTATCCTAACAAGGA s canFam1.chr1 18327674 299 - 124897793 TAAATAGACAATGACC---------------------------------TTAATTCTATT-----ATAACAATTCACCAAGAACGGA-TAAAACAACCGCTGACCACTCACTAACCAAAAAAAGAAACA----------AACAAGGAAAGTCATGAACCAACGTATGAGTA---------ATATTTATACAAACAAATACCCATGTAATTTTATTGG-------------------CAATTGACATATGGCTGATTAT-TACTTGAA---------CCCTACACAGTCTTAAAAT-TACT-AAG--TTGAAAATTGTTATCCAAACAGAACAGAAAAAAAAAAAAAC-AAAAACACAATTCGTTGAGGCTGTAGAAACTATCAT-ACAAAAG s fr1.chrUn 323272808 293 + 349519338 TAATAGGATGTTGAAA---------------------------------TTACAAGAATTTC---ATGACTTCTCATCTACACAGGA-TTAAAAAACTATTCACAACAAACCTTCACAACAAATATAC-------------------AAGTTATAAAAAAAAACAAGGATA---------ACATTTTTCCAGGCAAATAG--AGATAATTCTATTGG--------------------AAAAGACATATGGCTAATTCA-TATATGATTTTG-----CTCCACAATGTCTTAAATTGTACA-AAG--TTAAATATTGGCATGCACAATTAGAATATATACTAAAAAAT-CAAAACACAATTAACAGATGTGTTGTGACATACCCT--CAAATA s danRer1.chrUn 349887746 368 - 367113659 AAAAAATGTGTGGAGTGAAAGGTAAGtaatttataatattatataattattaaaattattttCTGAAAATATCTCGCCCACGGAAGGTTTACAATATAATTGACTTTCAATAAAAGAAATGAATTCTTGTTTGGTTGTCAACA----AAATTATCA--TAAAACATTTGTAAGTCACAGCATTTTAGTCACTTCAACCACCTAAAGTTTTATGCTTATTTTGTGCATTTATTATATTATTACAAATATTGTGTATTTATTATATTAGTCTTT----TCTTGCATTATACTGAAACATGCATCAGGCTTACCAATAG--ATACAAAAAGGTTCCACTGAAGGGGATAT-------TTGATTATTTTCTGAAGTGCTATCTGTC----CAAAA- a score=14159.0 s hg17.chr17_random 2322385 249 + 2618010 AATACAGGAA---------TATAAAATATTACAAAACAA-AATTGGATAAACATTAACCTGTGAAA-TACTGAATAAAC--AAATCATGCAACTGAAGAAGACTCTTTCTAGATAACTGAA--ATATTCAACCATAACTGGACACCCATA-AAGAACAGAT-T----TTGAATTATTA--GCATATG----------------GTTA----GAGTAACAAAA------TTTCACAACAAATGCATTATAATCTTCTATAAAGAACATTTAGAAGAAAATTTTAATGAAGATTTCAATG s panTro1.chrUn_random 177647216 250 - 240967748 AATACAAGaa---------tatataatattagaaaataa-aattaaataaaCATTAGCCTGTGAAA-TACCGAATAAAC--AAAGCATGCAATGGAAGAAGACTCTTTCTATATAAC--AAGCATGTTCAACCATAACTGGGCTCCCATAGAAGAGCAGAT-T----TTGAATTCTTA--GCATATG----------------GTTA----CAGTAACAAAA------TTGCACAACAAATACATTATAATCTCCCATAAAGAGCATTTAGAAGAAAATTTTAATAAAGATTTCAATG s canFam1.chr1 18327973 271 - 124897793 GAAGCATTGT---------TATGGA--ATTATAAAACAAGAATAAGAGAAATTTTAACTCCCAAAACTTCTGAATAAATTATAGGTATTTTATCAAAAAAGGATTCTTGTATGTAACTGTA--ATTTTAAACTGGGACTGTTC-CTCATG-GAAAGCAAACAT----TTGAAGCACTA--GCATGTGTTATATTGCTTAGAAAATTACCATCAATCATAAAA------TGTTCTAATAAAAATTTTATGAATAACCATATAAATGACATTAGAGAAAGTTGTTATTAATATTTCCACT s danRer1.chrUn 349888114 242 - 367113659 AATATACCCACTGTGCCTGTATGAAAAAGTA-AAAACAA-AAGAGAAAAAA--TTAA----TGAAA-GAATGCTTAAAT--TCATAATGAGATCAA------TTTTTTTTTGTTAAGCAAACTATAGTCAAATATA-----------ATA-AGCAACAGAT-TTTTCTTGAATGTTTAATGAAGACA----------------CTTG----TAAGAACACAGGGTGTCCTTTCTCAGAAAAATCTGATA------CACAGATAATGATCAGAAACGACTTTTATTTATGATATAAATG a score=-1997.0 s hg17.chr17_random 2322634 11 + 2618010 ATATTAGAGA-----------------------------------------a s panTro1.chrUn_random 177647466 52 - 240967748 ATATTAGAGACACTTTTTATTATGTTCTTAATATATTACTCCTCTTTTTATA s canFam1.chr1 18328244 11 - 124897793 TTTTCACAGG-----------------------------------------A a score=17698.0 s hg17.chr17_random 2322645 314 + 2618010 ca-----------------------------------------------gagtctcgctctgttacccaggctggagtgtagtggcgagacctcggctcactgcatcctccacctaccaggctgaagca----attctc-tgccccagcctcccgagtagctgggattataggcacccgcccccatgccctgctcattctttctgtggtttttgtggagacggggtttcaccatgttggccaggctggtcttgaacccctgacattgtgatccacccacctcagcctcttaaagtactgggattacaagcgtgagccaccgcactggccTATAATTTGTTTTTTTTTTTAAGTAAAGAAAAGCTTT s panTro1.chrUn_random 177647518 359 - 240967748 CAAATGGAAAGGCTATAAtttatttatttatttttaattttttgagatggagtctcgctttgtcacccaggctggagtgtagtggcgagacctcggctcactgcaacctccacctcccgggtt----cacaccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccatcacgcccggctaatt-tttgtgtatttttagtatagacggggtttcaccgtattagccaggaaggtcttgaactccggacctcgtgatccacccatctcaaccttttaatgtgctgtgattacaagcatgaaacacagcactggccTATAATTTATTTTTTTCA--AAGCAAAGAAAAGCCTT a score=21432.0 s hg17.chr17_random 2322959 186 + 2618010 ACATTTTTAAATATGGGAACAACATGAATACTGAAAAATATGCAATGAAACACTACTACATAA-TAAGCAATGAG----AAATAAATTATACTATCATTCAGATAA-TGTTGAGGAAAGTTAATAGAAACACTAATGATAAGTTTTTCTATGCAGTAAACTTA-------GACACACAAACTGAAA-TTTTATTAATGTG s panTro1.chrUn_random 177647877 186 - 240967748 ACATTTTTACATATGGGAACAACATGAATATTGTAAAATATGCTGTGGAAAACTACAATATAA-TAAGCAATTAG----AAATAAATTATACTATCATTCAGATAAATGTTGAGGAAAGTAAATGGAAACACTAATGATAAGTTTTTCTATGCAGTGAACTTA-------GACACA--AACTAAAACTTTTCTTAATGTG s canFam1.chr1 18328295 194 - 124897793 ACATTTCTTACTAAAGAAACCCCATGAATGTTGTAAAGTAATCTCAGGATTACTAACACATAAGTATACATTTGGGTTAACATTAATTATACCACAATTCAGATACATTCTGTGGAAAGCAGATGAAAATCCTAATGATTACTTTTTGACTGAAGTAAATTTATGTTTGTGAAGAA--AAC---AA-TTTAATACATACG a score=30337.0 s hg17.chr17_random 2323145 310 + 2618010 AGGTGCATACTAAGTAATTCACTTTTTATATAACACATAAAT-TCAAGTATGCTATTCTGAAATCCCTGAAGCTAAAATTATAGGCTAATTTGGGATACATAAA--AATCAAAA-AGTGAAAACGTGCAGATCACAGTCCCACTA-AGCTTTATAT----AAGATTAAATAATAAAATAAC--TCAATAAGAAATCATGTAACAATTAAGAATTTATTCTATTCTTGGCAGGTTTCTAAGTTTTTCTATGGCATTAAGGTCTT---------------TAAAAATTCTTTGAGGTGAGTAGATACAATAAACTATTCCACAGGTGAGGTGCTTG-GC s panTro1.chrUn_random 177648063 308 - 240967748 ATGTGCATACTATCCAATTCACTTTTTATATAACACACAAAT-TCAAGTATGTT-TTCTGAAACCCCTGAAGCTAAAATTATAGGCTAATTTGACATACATAAA--AA-CAGGATAGGGAAAACGTACAGATCACAGTCCCACTA-AGCTTTATAT----AAGATTAATTAATAAAATAAC--TCATTAAGAAATAATGTAACAGTTAAGAATTTGTTCTATTCCTGGCATGTTTCTAAGTTTTTCTATGG-ATTAAGATCTT---------------TAAAAATTCTTTGAGATGAGTAGATACAATAAACTATTCCACAGGTGAGATGTTTG-GC s canFam1.chr1 18328713 324 - 124897793 GGGTTTTGACTACCTAAATCACATCTTATAAAACACATGTACATCAAACATGGTATATGAGTACTTTAGAATCTAAAATCACAACCAAATTT----CACAGAAACTAATCACAG-AAGGATAACATCTGGGACATAGACATACAGCAACTTTACATAAACAAGCCAAAATTATAAAATGATAGTTGTGAAGAAATACGGTAACAATGTATGCTTTATTATATTTTGGACAATGTTCTAAGCTCCCCTATGACGTTAATATTTTAGCAATTATATGATGTAAAAA--ATATGATGTAAATAGATATTAT------TTTTACCATTTAGGAATTAGAGA a score=4788.0 s hg17.chr17_random 2323455 19 + 2618010 ATAGAGAGTTCACGTTTTT s panTro1.chrUn_random 177648371 19 - 240967748 ATAGAGAGTTCACATTTCT s canFam1.chr1 18329037 19 - 124897793 ACACAGAGTTGAAATTTCT s danRer1.chrUn 349888920 19 - 367113659 ATAGTGAAATAACATTTTA a score=11088.0 s hg17.chr17_random 2323474 74 + 2618010 --------AAGTTAATTTCTACCAAGGAAAAGAAAACTTTTTGACCTACATTACCAGAGATGAAAAAAAGAATAAAG----TGAAA s panTro1.chrUn_random 177648390 74 - 240967748 --------CAGTTAGTTTCTACTAAGGGAAAGAAAACTTTTTGACCTACATTACCAGAGATGAAAAAAAGAATAAAG----TGAAA s mm5.chr9 81553700 78 + 124177049 --------AAATTAATCCATACAAAGGAAAAGAAAGCTTGTTAAGCTATATTGCTAGGTATGCAGAAAAGAAGCAAAATATTGAGT s canFam1.chr1 18329057 41 - 124897793 --------ATGTTAGTTCATATGAAGAAAAAGGGAATTT---------------------------------TGAAG----TGAAA s danRer1.chrUn 349888939 67 - 367113659 CAATTCGTACTGTATTTTTTATC-----AAATAAATCTTGGTAAGC----------AGGATAAGCTAAAGAATAAAG----TTAAA a score=976.0 s hg17.chr17_random 2323548 14 + 2618010 TAGAAGCTTCA-CTA s panTro1.chrUn_random 177648464 15 - 240967748 TAGAAGATTCAGCTT s mm5.chr9 81553778 14 + 124177049 TAGGAATATTA-CTA s canFam1.chr1 18329098 14 - 124897793 TACAAATGTTC-TTA a score=975.0 s hg17.chr17_random 2323562 6 + 2618010 TATCAT s panTro1.chrUn_random 177648479 6 - 240967748 TATCAT s canFam1.chr1 18329112 6 - 124897793 TTTTAT a score=10707.0 s hg17.chr17_random 2323568 90 + 2618010 ATGTGCT---------GAGGTGTTTTGGGCTCTGATAAAAGTTTTT---CCGATTT---TTTTGCAGGATCACATTTGAAA---TCATAGGACTGAAAATTATGAAGC s panTro1.chrUn_random 177648485 91 - 240967748 ATGTGCT---------GAGGTGCTTTGGGCTCTGATAAA--TTTTTTTTCTGATTT---TTTTGCAGGAACACATTTGAAA---TCATAGGACTGAAAATTATGAGGA s canFam1.chr1 18329312 102 - 124897793 ATGTTCTTATTTTAGGGAGGTGCCTTGTACTCTGATGAA---CTTA---CTGAGTGGGATTTTGTAAGATGACGTTTGAGGCCTCCATGAGATTGGAAATCATAAAGT a score=80460.0 s hg17.chr17_random 2323658 491 + 2618010 AGAA--------ACATTTGTCCTTGGTGTTTCTGAAATATGTGAACCAAACCCCAATGCCTGCACTTTTACTCTCACAAACTTCTGACATGAGGAACAGAT----TTTTACAAAATAGCTTAATATAGAAGTCTCGCAAA-ATGTGCAGATTTCCCCAGATCCCCC---AAAACAATGGAAAAGCACTCAGACCAC--AAGGCCTTCAAGGGAATAACAGAAAGAAGAGGAGAACTTCGGCTGTCACTGTGAATGCCCTGGAATGTTAGTGGAGGGACAGGAGGAGCCTTAGAAGATTTAGGAGCATAATAAGCATAGGGTAGGAAATGTCCATCTGTGGCAGCAAAAGAAGTA-AATCTAGGATCTTCCAGAACCAATTTCATTGAAGC-GAACTTCCCACATCACATTTT----TAAAGTTTCCTCCTTGGCCTTTGCACCTCTCATCTTTGTTATTTG-----TTCATTATTGCCTATTGGGGTGATG-CCTATTATTTTCTCTCTTTTTACATTCCA s panTro1.chrUn_random 177648576 493 - 240967748 AGAA--------ACATTTGTCCTTGGAGTTTCTGAAATATGTGAACCAAACCCCAATGCCTGCACTTTTACTCTCACAAACTTCTGACATGAGGCACAGAT----TTTTACAAAACAGCTTAACATAGAAGTCTCACAAA-ATGTGCAGATTTCCTCAGAT-CCCA---AAAACAATGGAAAAGCACTCAGACCAC--AAGGCCTTCATGGGAATATCAGAAAGAAGAGGCGAACTTTGGCTCTCACTGTGAATGCCCTGAAATGTTAGTGGATGAACAGGAGAAGCCTTAGAAGATTTAAGAGCATAATAAGCATAGGGTAGGAAATTTCCACCTGTGGCAGCAAAAGAAGTAGAATTTATAATTTTCCAGAACCAATTTCTTTGAAGCAGAACTTCCCACACCACATTTT----TAAGGTTTTCTCCTTGGCCTTTGCACCTCTCATCTTTGTTATTTG-----TTCATTCTTCCCTATTGGGGTGATGCCCTATTATTTTCTCTCTTTTTACATTCCA s canFam1.chr1 18329414 495 - 124897793 AGAAGATATGTGATATCTATCTCCAGTGTTTACAACTTTTCTGAA------CCTAATATTCTGACCACTCCCCTTGCATATTTCTGTCAAGAAGCAAAAATGGAATTTTA-AAATTGGGTTCAAACAAATTCCTCAGAAATAGGCACAGATTTCGCCGGGTCCCCC---AAAGCAATAGAAACACAGATATATCAATGCAGGCCCTCACAGG--CAATGGAAAG---------TCCTTTATCCTCACTATGAATAGGTTGGAGGACCAGGGGAACAGAAAGAGAATCCTTAGAGGATATAGGAGCATGGGGAGTGTTAGATAGG-ATTGTCCCTTTGTCATAGCAAGGGAAATG-AACTTAATATTCTAGAAAGTTATTTTCATTCAACA-AAGTTTCCCAAAACGCGCTTTATGGTCTGGCTTCCTCCTTAAATTTTGGAC--CTAAGCTATGTCATCTGCTTCATTCATTCCCACCTGCCTGGATATAAGGCTACTGTCTCTTTTCTCTTAATATTCCA s fr1.chrUn 307421892 487 + 349519338 AGTA--------ACATCTGTCATTGATGTTCCTGAGATTTCTGAAACAAATCTTAATGTC---ACCACTGCTCTCACACACTTCAGATATGATGGAAAAAGAAAACTTCA-GAAATGATCTAACATGCACTTCCTCAAAATACTCAGAGATATTCTTATATCCCCCCTTGAAGCAATGGAAGAGGAGGCATATCAT-GCAGCACCTTATAAG----CCATAAAGAGG------ACTTTAGCTCTCACGGTACCTTCAAAGGAAAATCACTAAATAGCAAGTAACGTCCATAGAGAATTTAATGGTATG---------GGACAAATGATGCTCCTATACAAAAGCTACAGAATAA-AAAATGGC-TTTTTAGGAAACATTTCCACTGAAGCAGAGCATCCCATACCACATTTTAAGGTCTGCAATTCTTTTTGACCTTTGTACCTCTCGTCTGTGTTATCTGCTTCATTCATGCTTACCTGCCTGAGTATTTGACCACTGTCTCATGTCTCTTCACATTCCA a score=3822.0 s hg17.chr17_random 2324149 29 + 2618010 AAGATATTTCCTTTACTGTAGAACAGGGG s panTro1.chrUn_random 177649069 29 - 240967748 AAGATATTTCCTTTACTGTAGAAcagggg s fr1.chrUn 307422379 28 + 349519338 GGGGTCTTTTATTTGCT-CAAGGCAGGAG a score=1032.0 s hg17.chr17_random 2324178 13 + 2618010 CATCCAAGGGAGA s panTro1.chrUn_random 177649098 13 - 240967748 catccatgggaga a score=6063.0 s hg17.chr17_random 2324191 67 + 2618010 ATCTCACCACGACCCCAGGTCTAGAGCGCCCGGAGTCCGCCATCCCTGGGAATGGAGGCGGCTTCGG s panTro1.chrUn_random 25580238 67 - 240967748 ATCTCACCACGACCCCAGGTCTAGAGCGCCCGGAGTCCGCGATCCCTGGGAATGGAGGCGTCTTCGG a score=3311.0 s hg17.chr17_random 2324258 48 + 2618010 CCTGGGGTCGTGGTGAGATTCGTTGGT-GGCTGCGCGATTGTGGCGGAG s panTro1.chrUn_random 177650166 49 - 240967748 CCTGGGGTGGTGGTGAGATTCGTTGATTGACTGCGCGATGGTGGCTGAG a score=170.0 s hg17.chr17_random 2324306 12 + 2618010 TTGCAA-GCAA--AC s panTro1.chrUn_random 177650215 15 - 240967748 TTGCAAAGCAAGAAT s rn3.chr19 58576007 10 - 59223525 TTTCAA-GCAA---- a score=5308.0 s hg17.chr17_random 2324318 15 + 2618010 GGGTTTCATCACCTT s panTro1.chrUn_random 177650230 15 - 240967748 GGGTTTCATCACCTT s rn3.chr19 58576017 15 - 59223525 GGGCTTCATTGCTGT s canFam1.chr7 76903002 15 - 83037113 GAGTTCCATCGCCCT a score=96392.0 s hg17.chr17_random 2324333 200 + 2618010 AAATGGTTTTGAACCAAAGAAGCTGTATTCCCTTAAAAAGACGGACAACCCATCGTGTGAACTATAGAGTTTGTGAACAAATTTATATTGGGTTCATAGT------------GGCGTCATGCACGCAGA--------CTCCTGCGAGTTCCCCTAAGTTCTTAGAGGACTGCTTTGCCTTTTG-ATCTGAGAGTTGCAAATTTCCCTAAAGAATGGCCCTT s panTro1.chrUn_random 177650245 199 - 240967748 AAATGGTTTTGAACCAATGAAGCTATATTCCCTTAAAAAGACGGACAGCCCATCGTGTGAACTATAGAGTTTGTGAACAAATTTATATTGGGTTCATAGT------------GGCATCATGCACACAGA--------CTCCTGCGAGTTCCCCTAAGTTCTTAGAGGACTGCTTTACCTTTTG-ATCTGAGAGTTGCAAAGTTCCGTAAAGAATGGCCC-T s mm5.chr3 87542182 216 + 160575607 AAAGGGTTGTGAACCGATAAAGCCACACCCCCCTAAGAAGAAAGGCAGCCCACCACCAGAGCTGT--AGCTTGTTGACACAGTTATTTTGGGTTCA-AGTACACACATGTTGGGCCCAGTGCACACAGACTCACAGTCTCATGGGAGTTCCCCTAGGTTCTTAGCTCACTGCTTTGCCCTTTG-AT-TCATATCTGCAAAGTTTGTCAAAGAATGACCTTT s rn3.chr19 58576032 196 - 59223525 AAATGGTGGTGAACCGATGAAGCTGCGCCTCCTGAAAAAT-----CAGCCCATCGCATGAGCTGTAGAGTTTGTGAACACATTTATATTGGGTCCATAGT------------GGTGCAATGCACACAGA--------CTCCTGTGAGTTCCCCTAAGTTCTTAGCAGACTGTTTTGCCTTTTGAATCAGAGAGTTGCAAAGTTCAATAAAGAATGGCCCTT s canFam1.chr7 76903017 198 - 83037113 AAATAATTTTAAGCCAATAAACCCAGATTCCCTTAAAAAGACAAACAGCCCTTTGTGTGAACGAT--AGCATACAGACAGCTTTATATTGGGTTCATAGT------------GACATAGTGT-CATGCA--------CTCCTGCTCATTCTCTTCAATTCTTAGGGGACTGCTTTGCCTTTTGAACCAGAGGGTTGCCAACTTCCATAAAGAATGGCCCTT a score=21926.0 s hg17.chr17_random 2324533 46 + 2618010 GTGGATAAGCGCTAAGTCAAGAGACAGTGATTGGACAGAATTTGTG s panTro1.chrUn_random 177650444 46 - 240967748 GTGGATAAGCGCTAAGTCAAGAGACAGCGATTGGACAGAATTTGTG s mm5.chr3 87542398 28 + 160575607 GTGGATAAGCACAGAGTC------------CTGGA------TCATG s rn3.chr19 58576228 46 - 59223525 GTAGATAAGCACAAAATCAAGCAGCAATGATTGGACAGGGTTTGTG s canFam1.chr7 76903426 46 - 83037113 ATGGATAAGCACAAAATCAAGAGACAGCAATTGGACAGAATTTATG a score=68224.0 s hg17.chr17_random 2324579 42 + 2618010 AGGAATTCGCCCCCAGATCATGAAAGTCACCCTGA-ACCCCGC s panTro1.chrUn_random 177650491 43 - 240967748 AGGAATTCGCCGCCAGATCATGAAAGACCCCCCAAGACCCCGC s mm5.chr7 12428879 43 - 133051633 AGGTATCCGCCCCCAGATCATGAACGGCCCCCTGCACCCCCGC s rn3.chr19 58576275 43 - 59223525 AGGTATCCGCCCCCAGATCATGAACAACCTCCTGTACCCCCGC s canFam1.chr28 5158058 43 - 42450431 AGGTATCCGCCCCCAGATCATGAACGGCCCCCTGCACCCCCGC s galGal2.chr6 2458478 43 - 33893787 AGGTATCCGTCCTCAGATCATGAACGGCCCCATGCACCCCCGG s fr1.chrUn 323948808 43 - 349519338 AGGTATCAGGCCCCAAATCATGAACGGGCCCATGCATCCGCGC s danRer1.chr17 8188418 42 + 35757233 AGGTATAAGGCCTCAGATCATGAATGGCCCCATGCACCCCCG- a score=17910.0 s hg17.chr17_random 2324621 13 + 2618010 -CTCGTGGTGGCTC s mm5.chr7 12428922 13 - 133051633 -CCCCTGGTGGCAC s rn3.chr19 58576318 13 - 59223525 -CCCCTAGTGGCAC s canFam1.chr28 5158101 13 - 42450431 -CCCCTGGTGGCGC s galGal2.chr6 2458521 13 - 33893787 -CCCCTGGTGGCAC s fr1.chrUn 323948851 13 - 349519338 -CCGTTGGTGGCGC s danRer1.chr17 8188460 14 + 35757233 GCCGCTGGTGGCTC a score=177946.0 s hg17.chr17_random 2324634 98 + 2618010 TGCTGGATGGACGGGACTGCACTGTGGACATGCCCATCCTGAAGGACCTG-GCCACC-TGGCCTTCTGTGAGGCTCAGTCCATGCAGGAGATCCACGAGA s panTro1.chrUn_random 177650547 98 - 240967748 TCCTGGTCGGCCGTGACTGCACCGTGGACATGCCCATCCTGAAGGACCTGTGCCACCGTGGCCTTCTATGATG--CAGCCCACGCAGGAAACCCACGAGA s mm5.chr7 12428935 99 - 133051633 TGCTGGATGGCAGAGACTGCACTGTGGAGATGCCCATCCTGAAGGACCTG-GCCACTGTGGCCTTCTGTGATGCACAGTCCACTCAGGAAATCCATGAGA s rn3.chr19 58576331 92 - 59223525 -------TGATGGAGACTGCACTGTGGAAATGCCCATCCTGAAGGACCTG-GCCACTGTCTCCTCCTGCAATGCACAGTCCACTCAAGAAATCCATGAGG s canFam1.chr28 5158114 99 - 42450431 TGCTCGATGGCAGAGACTGCACCGTGGAGATGCCGATCCTGAAGGACCTG-GCCACTGTGGCCTTCTGTGACGCACAGTCCACTCAGGAGATCCACGAGA s galGal2.chr6 2458534 99 - 33893787 TGCTGGATGGCAGGGACTGCACGGTGGAGATGCCCATTCTGAAGGACTTG-GCGACCGTGGCGTTCTGTGATGCACAATCAACTCAGGAGATCCACGAGA s fr1.chrUn 323948864 99 - 349519338 TCCTGGACGGGCGCGACTGCACCGTGGAAATGCCCATCCTGAAAGACTTG-GCTACCGTGGCCTTCTGCGACGCTCAGTCCACACAAGAGATACACGAGA s danRer1.chr17 8188474 99 + 35757233 TGCTGGACGGGAGAGACTGTACTGTGGAGATGCCCATCCTAAAGGATTTG-GCAACCGTGGCGTTTTGTGATGCACAGTCCACGCAGGAAATCCATGAGA a score=7617.0 s hg17.chr17_random 2324732 4 + 2618010 AAGT s panTro1.chrUn_random 177650645 4 - 240967748 AAGT s mm5.chr7 12429034 4 - 133051633 AGGT s rn3.chr19 58576423 4 - 59223525 TGGT s canFam1.chr28 5158213 4 - 42450431 AGGT s galGal2.chr6 2458633 4 - 33893787 AGGT s fr1.chrUn 323951809 4 - 349519338 AGGT s danRer1.chr17 8188573 4 + 35757233 AGGT a score=91.0 s hg17.chr17_random 2324736 1 + 2618010 T s danRer1.chr17 8188577 1 + 35757233 T a score=-265.0 s hg17.chr17_random 2324736 1 + 2618010 T s panTro1.chrUn_random 177650649 1 - 240967748 T s mm5.chr7 12429038 1 - 133051633 G s rn3.chr19 58576427 1 - 59223525 G a score=91.0 s hg17.chr17_random 2324736 1 + 2618010 T s canFam1.chr28 5158481 1 - 42450431 T a score=91.0 s hg17.chr17_random 2324736 1 + 2618010 T s galGal2.chr6 2459709 1 - 33893787 T a score=-114.0 s hg17.chr17_random 2324736 1 + 2618010 T s fr1.chrUn 323951813 1 - 349519338 G a score=220841.0 s hg17.chr17_random 2324737 137 + 2618010 CTAAACGAAGTCGT-GGGCGCCATGATGTA-CCACACCTTCTCCCTCACCAGGGAAGACCTGGAAAATTTCAAGGCCCTGAGAGTGATCGTGCAGGTGGGCAGTGGCTACGACAACGTGGCCATCAAGGCTGCTGGCGA s panTro1.chrUn_random 177650650 136 - 240967748 CTAAACAGAGCCGTGGGGCGCCATGATGCA-CCACACAATC-ACCTCACCAGGGAGGTTCTGGCAAATTTCAAGTCCTTGAGAGTGATCGTG-GGGTGGGCAGTGGCTATGACAACGTGGACATCAAGGCTGCCAGTGA s mm5.chr7 12429278 137 - 133051633 TTGAATGAGGCTGT-GGGTGCCATGATGTA-CCACACCATCACCCTCACCAGGGAAGACCTGGAGAAGTTCAAGGCCCTGAGAGTGATCGTGCGAATCGGTAGTGGCTACGACAACGTGGACATCAAGGCTGCTGGCGA s rn3.chr19 58576428 136 - 59223525 TTGAATGAGGCTGC-AGGTGTCATGATGTA-CCACACTATCACCCTCACCCGGGAAGACTTGGAGAAGTTCAAGGCCCTGAGAGTTATTGCT-GAATTGATAGTGACTAAGACAACGTGGACATCCAGGCTGTTGGCGA s canFam1.chr28 5158482 137 - 42450431 CTAAACGAAGCCGT-GGGTGCCATGATGTA-CCACACCATCACCCTCACCAGGGAGGACCTGGAGAAGTTCAAGGCCTTGAGGGTGATCGTGCGGATAGGCAGCGGCTACGACAACGTCGACATCAAGGCCGCCGGCGA s galGal2.chr6 2459710 137 - 33893787 TAAAAGGAAGCTGT-GGGGGGGATGATGTACCCACACC-CCACGCGGACTCGAGAAGACCTGGAGAAGTTCAAGGCCTTGCGGGTCATTTTTCGAATAGGCAGCGGCTACGACAACATCGACATCAAAGCAGCGGGGGA s fr1.chrUn 323951814 137 - 349519338 CTGAACGAGGCAGT-GGGGGCCATGATGTA-CCACACCATCACCCTGACCAGAGAGGACCTGGAAAAGTTCAAAGCTCTGCGAATCATCATCCGCATCGGCAGCGGCTACGACAACATCGACATCAAGGCGGCCGGAGA s danRer1.chr17 8192455 137 + 35757233 TTGAACGAGGCGGT-GGGTGCGATGATGTA-CCACACCATCACCCTGACCAGAGAAGACCTGGAAAAGTTCAAAGCCCTCCGGATTATCATCCGCATCGGCAGTGGATACGACAACATCGACATTAAAGCTGCCGGAGA a score=4761.0 s hg17.chr17_random 2324874 3 + 2618010 GCT s panTro1.chrUn_random 177650786 3 - 240967748 GCT s mm5.chr7 12429415 3 - 133051633 GCT s rn3.chr19 58576564 3 - 59223525 CCT s canFam1.chr28 5158619 3 - 42450431 GCT s galGal2.chr6 2459847 3 - 33893787 GCT s fr1.chrUn 323951951 3 - 349519338 GCT a score=1500.0 s hg17.chr17_random 2324877 1 + 2618010 C s panTro1.chrUn_random 177650789 1 - 240967748 C s mm5.chr7 12429418 1 - 133051633 C s rn3.chr19 58576567 1 - 59223525 C s canFam1.chr28 5158622 1 - 42450431 C s galGal2.chr6 2459850 1 - 33893787 C a score=-114.0 s hg17.chr17_random 2324877 1 + 2618010 C s fr1.chrUn 323952664 1 - 349519338 A a score=3129.0 s hg17.chr17_random 2324878 3 + 2618010 GAA s panTro1.chrUn_random 177650790 3 - 240967748 GGA s mm5.chr7 12432860 3 - 133051633 GGG s rn3.chr19 58576568 3 - 59223525 GGG s canFam1.chr28 5162725 3 - 42450431 GGG s galGal2.chr6 2462182 3 - 33893787 GGG s fr1.chrUn 323952665 3 - 349519338 GGC a score=341708.0 s hg17.chr17_random 2324881 204 + 2618010 ATTGCTGTGTGCAGCATCCCGTCCGCAGCCGTGGAAGAGACAGCCGACTCCACCACCGGCCACATCCTCAATCTGTACTGGGGGAACAGGTCGCTGTACCAGGCACTGAGGGAAGGCACGCGAGTTCAGAGCGTGGAGCAGAT-TGGCGAGGTGGCCTC---AGTAAAGGCTCGCATTCGTGGGGAGATATTGGGCCTCATCGGCTTC s panTro1.chrUn_random 177650793 204 - 240967748 ATTGCTGTGTGAAACATCCTGTCCGCAGCCGTGGAAGAGACAGCCAATTCCACCAACTGCCACATTCTCAACATGTACCGGAGGAACACATGGCTGTACCAGGCACTG-TGGAAGGCAAGCGGGTTCAGAACATGGAGCAGATCTTGCGAGGTGGCCTCGGGAGT---GGCCCGCATTCGTGGGAAGACGCCGGACCTCATCGGCTAC s mm5.chr7 12432863 204 - 133051633 ATCGCTGTGTGCAACATCCCATCTGCTGCAGTGGAGGAGACAGCAGATTCGACAGTCTGCCACATTCTCAATCTGTATCGGCGGAACACATGGCTCTACCAGGCCCTCCGAGAAGGCACTCGAGTACAGAGTGTGGAACAGAT-CCGTGAGGTCGCCTCAGGAGC---TGCTCGGATCCGAGGGGAAACACTGGGCCTCATTGGCTTT s rn3.chr19 58576571 204 - 59223525 ATCGCCATGTGCAACATCCCATCTGCTGTGGTGGAGGAGAGAGCAGATTCGACAGTCTGCCACATCCTCAATCTGTATCAGTGGAACACATGGCTGTACCAGGCCCTACGAGAAGGCACAAAGGTACGAAGTGTGGAACAGAT-CCAGGAGGTTGCCTCGGGAGC---TGCTCGGATCCGAGGGGAAACATTGGGCCTCATTGGCTTT s canFam1.chr28 5162728 204 - 42450431 ATCGCCGTGTGCAACATCCCGTCGGCCGCCGTGGAGGAGACGGCGGACTCCACCATCTGCCACATCCTCAACCTGTACCGGCGGAACACGTGGCTGTACCAGGCGCTGCGGGAGGGCACGCGGGTGCAGAGCGTCGAGCAGAT-CCGGGAGGTCGCCTCGGGAGC---CGCCCGCATCCGCGGGGAGACGCTGGGCCTCATCGGCTTC s galGal2.chr6 2462185 204 - 33893787 ATCGCCGTCTGCAACATCCCCTCGGCCGCCGTGGAGGAGACGGCCGACTCCACCGTCTGCCACGTCCTCAACCTCTACCGGCGGAACACGTGGCTCTACCAGGCGCTGCGGGAGGGCACGCGGGTGCAGAGCGTGGAGCAGAT-CCGGGAGGTGGCCTCTGGTGC---TGCACGTATCCGGGGCGAGACGCTCGGCCTCATCGGCTTC s fr1.chrUn 323952668 204 - 349519338 ATCGCCGTGTGCAACATTCCCTCGGCAGCTGTGGAGGAGACGGCCGACTCCACCCTGTGCCACATCCTCAACCTCTACCGACGAAACACCTGGCTCTACCAGGCCCTGCGAGAAGGCACGCGCGTCCAGAGCGTGGAGCATAT-CCGCGAGGTGGCGTCCGGGGC---CGCGCGCATCCGCGGCGAAACCTTGGGTCTCATCGGTTTC s danRer1.chr17 8194733 204 + 35757233 ATTGCGGTGTGTAATATTCCGTCGGCTGCGGTGGAGGAGACGGCGGACTCGACGCTCTGCCACATCTTGAATCTCTACCGCAGGAACACGTGGCTGTATCAGGCCATGCGGGAAGGCACACGGGTGCAGAGCGTGGAGCAGAT-CAGAGAGGTGGCGTCAGGAGC---CGCACGAATCAGAGGAGAGACGCTCGGACTCATCGGCTTC a score=15197.0 s hg17.chr17_random 2325085 11 + 2618010 GGTCGCACGCA s panTro1.chrUn_random 177650997 11 - 240967748 GGTCGCACGCA s mm5.chr7 12436449 11 - 133051633 GGTCGCACAGG s rn3.chr19 58576775 11 - 59223525 GGTCGCACTGG s canFam1.chr28 5165448 11 - 42450431 GGTCGCACGGG s galGal2.chr6 2463120 11 - 33893787 GGTCGCACGGC s fr1.chrUn 323955207 11 - 349519338 GGTCGTACCGG s danRer1.chr17 8194937 11 + 35757233 GGTCAGAAACA a score=36096.0 s hg17.chr17_random 2325096 30 + 2618010 GCAGGAGGTTGCAGTTCGAGCCAAGGCCT----------------------------------------------------------T s panTro1.chrUn_random 177651008 62 - 240967748 GCAGGCTTTTGCAGTTCCAGCCACAGCCTTTGGATTCAGCGTCATATTTTATTA--------------------------CCCCTACT s mm5.chr7 12436460 62 - 133051633 GCAGGCAGTTGCTGTTCGAGCCAAGGCCTTTGGATTCAGC-------------GTCATATTTTATGA-------------CCCCTACT s rn3.chr19 58576786 62 - 59223525 GCAGGCAGTTACTGTTCAAGACAAGGCCTATGTATTCAGC-------------ATCATATTTTATGA-------------CCTCTACT s canFam1.chr28 5165459 62 - 42450431 GCAGGCGGTTGCTGTTCGAGCCAAGGCCTTTGGATTCAGC--------------------------GTCATATTTTATGACCCCTACT s galGal2.chr6 2463131 62 - 33893787 GCAGGCGGTTGCGGTCCGAGCCAAGGCGTTCGGCTTCAAC-------------GTCATATTCTACGA-------------CCCGTACC s fr1.chrUn 323955218 62 - 349519338 GCAGGCGGTGGCGGTGCGCGCTAAGGTCTTCGGCTTCAAC-------------GTCATCTTCTACGA-------------CCCCTACC a score=266419.0 s hg17.chr17_random 2325126 139 + 2618010 TGCAGGATGGGATCGAGCGGTCCCTGGGTGTGCATAGGGTCTACA-CCCAGCAGGATTTGCTGTATCAGAACGACTGCGTCTTCTTGCATTGCAATCTCAACGAACAAAACTACC-ACCTTATCCATGACTTTACTATAAA s panTro1.chrUn_random 177651070 140 - 240967748 TGAAGGATGGGATCGAGCAGTCCCTGGGCATGCAGAGGGTCTACACCCCTGCAGGATTGGCTGTATCAGAGCGACTGCGTCTCCTTGCGCTGCAGTCTCAACGAACATAAGCATC-ACCTCATCAATGAATTTACCATAAA s mm5.chr7 12436522 139 - 133051633 TACAGGATGGGATAGAACGATCTCTGGGCGTGCAAAGGGTCTACA-CCCTGCAGGACTTGCTATATCAGAGCGACTGCGTCTCCTTGCACTGCAACCTGAACGAGCACAACCATC-ACCTCATCAATGACTTCACTATCAA s rn3.chr19 58576848 140 - 59223525 TACAGGATGGGGTAGAGCGGTCTCTGGGCGTGCAAAGGGTCTACA-CCCTGCAGGACTTGCTGTACCAGAGTGACTGTGTCTCCTTGCACTGCAATCTGAACGAGCACAACCACCAACCTCATCAATGACTTCACTACCAA s canFam1.chr28 5165521 139 - 42450431 TGCAGGATGGGATAGAGCGGTCCCTGGGCGTGCAGAGGGTCTACA-CCCTGCAGGACTTACTGTATCAGAGCGACTGCGTCTCCTTGCACTGTAATCTCAACGAACATAACCACC-ACCTCATCAATGACTTTACTATAAA s galGal2.chr6 2463193 139 - 33893787 TGCAGGATGGCATAGAGCGGTCCCTGGGAGTCCAGCGGGTGTACA-CGCTCCAGGACCTGCTCTATCAGAGCGACTGCGTCTCGTTGCACTGCAACCTTAACGAACACAACCACC-ACCTCATCAACGACTTCACGATTAA s fr1.chrUn 323955280 139 - 349519338 TGCAGGACGGCCTGGAGCGCTCGCTGGGCGTCCAGCGCGTCTACA-CCCTGCAGGACCTGCTCTACCAGAGCGACTGCGTCTCCCTGCACTGCAACCTGAACGAACACAACCACC-ACCTCATCAACGACTTCACCATCAA s danRer1.chr17 8197229 139 + 35757233 TGCAAGACGGTCTGGAGCGCTCGCTGGGCGTGCAGAGAGTTTACA-CCTTACAGGACCTGCTGTACCAGAGCGACTGTGTGTCTCTGCACTGCAACCTGAACGAACACAACCATC-ACCTCATCAACGACTTCACCATCAA a score=-31.0 s hg17.chr17_random 2325265 1 + 2618010 G s danRer1.chr17 8197368 1 + 35757233 A a score=100.0 s hg17.chr17_random 2325265 1 + 2618010 G s fr1.chrUn 323956517 1 - 349519338 G a score=100.0 s hg17.chr17_random 2325265 1 + 2618010 G s canFam1.chr28 5165660 1 - 42450431 G a score=600.0 s hg17.chr17_random 2325265 1 + 2618010 G s panTro1.chrUn_random 177651210 1 - 240967748 G s mm5.chr7 12437053 1 - 133051633 G s rn3.chr19 58576988 1 - 59223525 G a score=100.0 s hg17.chr17_random 2325265 1 + 2618010 G s galGal2.chr6 2463332 1 - 33893787 G a score=12662.0 s hg17.chr17_random 2325266 7 + 2618010 CAGATGA s panTro1.chrUn_random 177651211 7 - 240967748 CGGATGA s mm5.chr7 12437054 7 - 133051633 CAGATGA s rn3.chr19 58576989 7 - 59223525 CAGACGA s canFam1.chr28 5165979 7 - 42450431 CAGATGA s galGal2.chr6 2463333 7 - 33893787 CAGGTAA s fr1.chrUn 323956518 7 - 349519338 CAGATGC s danRer1.chr17 8201357 7 + 35757233 CAGATGC a score=215299.0 s hg17.chr17_random 2325273 121 + 2618010 GGCAGGGAGCATTCCTTGTGAACGCAGCCCGTGGTGGCCTGGTGGACGAGAAAGCCTGAGCACACATCCTCAAGGAGGGCAGAATACGAGGGGCAGCCCTCGACGTGAATGAGTCGGAGCC s panTro1.chrUn_random 177651218 121 - 240967748 GGCAGGGAGCATTCCTTGTGAACGCAGCCCGTGGTGGCCTGATGGATGAGAAAGCCTTAGCACAGGCCCTCAAGGAGGGCAGGATAGGAGGGGCAGTCCTCGACGTGAATGAGTCGCAGCC s mm5.chr7 12437061 121 - 133051633 GGCAAGGTGCATTCCTTGTGAATGCAGCCCGAGGTGGCCTGGTGGATGAGAAAGCCTTAGCTCAGGCCCTCAAGGAGGGCAGGATACGAGGAGCTGCCCTGGATGTGCACGAGTCTGAGCC s rn3.chr19 58576996 121 - 59223525 GGCAAGGAACATTCCTTGTGAATGCAGCCCGAGATGGCCTGGTAGATGAGAAAACCTTAGCTCCGGCCCTCAAAGAGGGTAAGATACAAGGAGCTGCTCTAGATGTACATGAGTCTGAGCC s canFam1.chr28 5165986 121 - 42450431 GGCAAGGAGCCTTCCTGGTGAACGCGGCCCGCGGCGGGCTGGTGGATGAGAAGGCCTTGGCCCAGGCCCTCAAGGAAGGCAGGATACGAGGGGCCGCCCTCGACGTGCACGAATCGGAGCC s galGal2.chrUn 130665537 121 + 165033910 GGCAGGGAGCGTTCCTGGTGAACACGGCGCGCGGTGGGCTGGTGGATGAGAAGGCCTTAACTCAAGCCCTGAAGGAGGGTCGGATACGAGGGGCTGCGCTCGACGTGCACGAGTCGGAACC s fr1.chrUn 323956525 121 - 349519338 GTCAGGGTGCGTTCCTGGTCAACACCGCGAGGGGAGGCCTGGTGGACGAGAAGGCCCTGGCGCAGGCGCTCAAAGAGGGGAGGATACGCGGAGCCGCGCTGGACGTTCACGAGACGGAGCC s danRer1.chr17 8201364 121 + 35757233 GACAGGGAGCGTTTCTCGTGAACACAGCTCGCGGTGGTCTGGTGGATGAGAAAGCTCTGGCTCAGGCTCTGAAAGAGGGCAGGATACGCGGCGCTGCCCTGGACGTTCATGAGTCTGAACC a score=3773.0 s hg17.chr17_random 2325394 2 + 2618010 CT s panTro1.chrUn_random 177651339 2 - 240967748 GT s mm5.chr7 12437182 2 - 133051633 CT s rn3.chr19 58577117 2 - 59223525 CT s canFam1.chr28 5166534 2 - 42450431 CT s galGal2.chrUn 130665658 2 + 165033910 CT s fr1.chrUn 323956646 2 - 349519338 CT s danRer1.chr17 8201485 2 + 35757233 CT a score=1179.0 s hg17.chr17_random 2325396 1 + 2618010 T s panTro1.chrUn_random 177651341 1 - 240967748 T s mm5.chr7 12437184 1 - 133051633 T s rn3.chr19 58577119 1 - 59223525 T s canFam1.chr28 5166536 1 - 42450431 C s galGal2.chrUn 130665660 1 + 165033910 T s fr1.chrUn 323956648 1 - 349519338 T a score=60.0 s hg17.chr17_random 2325396 2 + 2618010 TT s danRer1.chr17 8206516 2 + 35757233 TC a score=91.0 s hg17.chr17_random 2325397 1 + 2618010 T s fr1.chrUn 323957232 1 - 349519338 T a score=294.0 s hg17.chr17_random 2325397 1 + 2618010 T s panTro1.chrUn_random 177651342 1 - 240967748 T s mm5.chr7 12437185 1 - 133051633 C s rn3.chr19 58577120 1 - 59223525 C s canFam1.chr28 5166537 1 - 42450431 T s galGal2.chrUn 130665661 1 + 165033910 C a score=223745.0 s hg17.chr17_random 2325398 127 + 2618010 AGTTTTGCTCGGGGTCTGTTGAAAGATG----CCTGGAATCTCATCTGCACTCCTCTCACTGCCTGCTA-CAGCCAGCAGGTGTCACTGGAGATGAGCGAGGCAGTTGCCACTGAGATCCGCCAAGCCATCA s panTro1.chrUn_random 177651343 129 - 240967748 AGCTTTGCTCAGGGTCCGTTGAAAGATGCCCCCC---AATCTCATCTGCACTCCTCACACTGCCTGCTACCAGCCAGCAGGTGTCACTGGAGATGAGGGAGACAGCTGCCACCAAGATCCGCCGAGCCATCA s mm5.chr7 12437666 127 - 133051633 AGCTTCGCCCAGGGCCCATTGAAGGATG----CTCCAAATCTCATCTGCACACCACACACAGCCTGGTA-CAGTGAACAAGCATCACTAGAGATGAGGGAAGCAGCAGCCACTGAGATCCGCCGAGCAATCA s rn3.chr19 58577121 127 - 59223525 AGCTTTGCTCAGGGCCCATTGAAGGATG----CTCCAAATCTCATCTGCACACCACACACAGCCTGGTA-CAGAGAACAAGCATCACTAGAAATGAGGGAAGCAGATGCCCCCAAGATCCGTCGAACAATCA s canFam1.chr28 5166538 127 - 42450431 AGCTTTGCTCAGGGTCCCTTGAAAGATG----CGCCGAATCTCATTTGTACGCCGCACACCGCGTGGTA-CAGTGAGCAAGCCTCACTAGAGATGAGGGAGGCAGCCGCCACCGAGATCCGCCGGGCAATCA s galGal2.chr6 2463733 127 - 33893787 AGTTTTGCTCAAGGCCCATTGAAAGATG----CTCCTAATTTAATCTGCACGCCGCACACGGCCTGGTA-CAGCGAGCAGGCGTCGCTGGAGATGAGAGAAGCTGCTGCTACCGAAATCCGGCGCGCCATCA s fr1.chrUn 323957233 127 - 349519338 AGCTTTGCTCAGGGCCCCCTGAAGGACG----CTCCCAACCTGATCTGCACGCCACACACAGCCTGGTA-CAGCGAGCAGGCGTCTCTAGAGATGAGGGAGGCGGCCGCCACCGAGATCCGGAGGGCCATCA s danRer1.chr17 8206518 127 + 35757233 AGTTTCACTCAGGGTCCTCTGAAGGACG----CGCCCAATCTGATCTGCACCCCTCACACAGCCTGGTA-CAGTGAGCAGGCCTCACTAGAGATGAGAGAGGCAGCAGCCACCGAGATCCGCAGAGCCATCA a score=-31.0 s hg17.chr17_random 2325525 1 + 2618010 T s danRer1.chr17 8206645 1 + 35757233 C a score=205.0 s hg17.chr17_random 2325525 1 + 2618010 T s panTro1.chrUn_random 177651472 1 - 240967748 C s mm5.chr7 12438116 1 - 133051633 T s canFam1.chr28 5167338 1 - 42450431 C s galGal2.chr6 2463860 1 - 33893787 C a score=-31.0 s hg17.chr17_random 2325525 1 + 2618010 T s fr1.chrUn 323957360 1 - 349519338 C a score=6006.0 s hg17.chr17_random 2325526 4 + 2618010 AAGT s panTro1.chrUn_random 177651473 4 - 240967748 AGGT s mm5.chr7 12438117 4 - 133051633 AGGT s canFam1.chr28 5167339 4 - 42450431 AGGT s galGal2.chr6 2463861 4 - 33893787 AGGT s fr1.chrUn 323957692 4 - 349519338 AGGT s danRer1.chr17 8206646 4 + 35757233 CGGT a score=2100.0 s hg17.chr17_random 2325530 1 + 2618010 C s panTro1.chrUn_random 177651477 1 - 240967748 C s mm5.chr7 12438121 1 - 133051633 C s rn3.chr19 58577248 1 - 59223525 C s canFam1.chr28 5167343 1 - 42450431 C s galGal2.chr6 2464400 1 - 33893787 C s fr1.chrUn 323957696 1 - 349519338 C a score=145807.0 s hg17.chr17_random 2325531 105 + 2618010 GCATCCCGGGAAGCTTAAGAAACTGTGTGAACAAGGAATTCTTTG-TCACATCAGCGCTTTGGTCCGTAATAAACCAGCAAGAAATTCATCCTGAGCTCAGTGGTG s panTro1.chrUn_random 177651478 89 - 240967748 GCATCCCAGGAAGCTTAAGAAACTGTGTGAACAAGGAATTCTTTG-TCACATCTGTGCTTTGGTGGGAAATAGACCAGCAAGCAATTCGT---------------- s mm5.chr7 12438122 105 - 133051633 GCATCCCAGAAAGCTTACGAAACTGTGTCAACAAAGAATTCTTCG-TGACTTCAGCTCCTTGGTCAGTCATTGACCAGCAAGCAATTCACCCCGAGCTCAATGGTG s rn3.chr19 58577249 104 - 59223525 AGGTCCCAGAAAGTTTACAAAAC--TGTCAACAAAGAAGTCTTCGTTTACTTCAGCTTCTAGGTCAGTCATTAACCAGCAAACAATTCATCCTGAGCTCAGTGGTG s canFam1.chr28 5167344 105 - 42450431 GCATCCCCGAAAGCTTAAGAAACTGCGTGAACAAGGAATTCTTTG-TCACAACAGCTCCCTGGTCGGTCATCGATCAGCAGGCCATCCATCCGGAGCTCAACGGCG s galGal2.chr6 2464401 105 - 33893787 GCATCCCAGAAAGCCTAAGGAACTGCGTGAACAAGGAATTCTTTG-TCACAACAGCTCCGTGGTCAGTAATAGATCAGCAAGCGATCCATCCAGAGCTCAATGGTG s fr1.chrUn 323957697 105 - 349519338 GTATCCCGGACAGCTTAAGAAACTGCGTCAACAAGGAGTTCTTTG-TCACCACGGCACCGTGGGCAGTTTTGGACCAGCCGGGCGTTCACCCCGAGCTCAACGGCG s danRer1.chr17 8210501 102 + 35757233 GTATTCCAGACAGTCTCAGAAACTGCGTCAACAAAGAGTTTTTTG-TGACTACGGCGCCGTGGGGGGTGATGGAGCAGCAGG---TTCATCCGGAGCTCAACGGCG a score=33523.0 s hg17.chr17_random 2325620 16 + 2618010 CCTGAGCTCAGTGGTG s panTro1.chrUn_random 25581668 16 - 240967748 CCTGAGCTCAGTGGTG s mm5.chr7 12438211 16 - 133051633 CCCGAGCTCAATGGTG s rn3.chr19 58577337 16 - 59223525 CCTGAGCTCAGTGGTG s canFam1.chr28 5167433 16 - 42450431 CCGGAGCTCAACGGCG s galGal2.chr6 2464490 16 - 33893787 CCAGAGCTCAATGGTG s fr1.chrUn 323957786 16 - 349519338 CCCGAGCTCAACGGCG s danRer1.chr17 8210587 16 + 35757233 CCGGAGCTCAACGGCG a score=6172.0 s hg17.chr17_random 2325636 7 + 2618010 CTACCTA s panTro1.chrUn_random 25581684 7 - 240967748 CTACCTA s mm5.chr7 12438227 7 - 133051633 CCACATA s rn3.chr19 58577353 7 - 59223525 CCACATA s canFam1.chr28 5167449 7 - 42450431 CCACATA s galGal2.chr6 2466397 7 - 33893787 CTGACTC s fr1.chrUn 323957802 7 - 349519338 CCGCCTA s danRer1.chr17 8210603 7 + 35757233 GAGCCTA a score=3878.0 s hg17.chr17_random 2325636 7 + 2618010 CTACCTA s mm5.chr7 12438227 7 - 133051633 CCACATA s rn3.chr19 58577353 7 - 59223525 CCACATA s canFam1.chr28 5167449 7 - 42450431 CCACATA s galGal2.chr6 2466397 7 - 33893787 CTGACTC s fr1.chrUn 323957802 7 - 349519338 CCGCCTA s danRer1.chr17 8210603 7 + 35757233 GAGCCTA a score=100.0 s hg17.chr17_random 2325643 1 + 2618010 C s danRer1.chr17 8210610 1 + 35757233 C a score=100.0 s hg17.chr17_random 2325643 1 + 2618010 C s fr1.chrUn 323959075 1 - 349519338 C a score=600.0 s hg17.chr17_random 2325643 1 + 2618010 C s panTro1.chrUn_random 25581691 1 - 240967748 C s mm5.chr7 12438234 1 - 133051633 C s rn3.chr19 58577360 1 - 59223525 C a score=300.0 s hg17.chr17_random 2325643 1 + 2618010 C s mm5.chr7 12438234 1 - 133051633 C s rn3.chr19 58577360 1 - 59223525 C a score=100.0 s hg17.chr17_random 2325643 1 + 2618010 C s canFam1.chr28 5169230 1 - 42450431 C a score=100.0 s hg17.chr17_random 2325643 1 + 2618010 C s galGal2.chr6 2466404 1 - 33893787 C a score=6423.0 s hg17.chr17_random 2325644 4 + 2618010 AGAT s mm5.chr7 12439873 4 - 133051633 AGGT s rn3.chr19 58577361 4 - 59223525 AGGT s canFam1.chr28 5169231 4 - 42450431 AGAT s galGal2.chr6 2466405 4 - 33893787 AGGT s fr1.chrUn 323959076 4 - 349519338 AGAT s danRer1.chr17 8210611 4 + 35757233 AGGT a score=8546.0 s hg17.chr17_random 2325644 4 + 2618010 AGAT s panTro1.chrUn_random 25581692 4 - 240967748 AGAT s mm5.chr7 12439873 4 - 133051633 AGGT s rn3.chr19 58577361 4 - 59223525 AGGT s canFam1.chr28 5169231 4 - 42450431 AGAT s galGal2.chr6 2466405 4 - 33893787 AGGT s fr1.chrUn 323959076 4 - 349519338 AGAT s danRer1.chr17 8210611 4 + 35757233 AGGT a score=51774.0 s hg17.chr17_random 2325648 65 + 2618010 --------------------------------------------------------------------ATCTGCCAGGCATGGTGGGCGTGGCTCCAGGAGGACTT--CTGCAGCC---------AGGGAAGACATCATCCCTG s panTro1.chrUn_random 177651567 61 - 240967748 -------------------------------------------------------------------------CCAGGCATCATGGGTGTGGCTCCAGGAGGACTT-CCTGCATCC---------ATGGAAGGGATCTTCCCTG s mm5.chr7 12439877 66 - 133051633 --------------------------------------------------------------------ATCCACCCGGCATTGTAGGTGTGGCTCCAGGAGGGCTT-CCTCCAGCG---------ATGGAAGGGATCATCCCTG s rn3.chr19 58577365 65 - 59223525 --------------------------------------------------------------------GTCCACCAGGCATTGTAGGTGTGGCTTGAGGAGAGCTT-CCTCCAGCT---------ATGGAAGGAATCATCCCT- s canFam1.chr28 5169235 66 - 42450431 --------------------------------------------------------------------ACCCGCCAGGCATCGTGGGTGTGGCTCCGGGAGGACTT-CCTGCAGCC---------ATGGAAGGGATCATCCCCG s galGal2.chr6 2466409 66 - 33893787 --------------------------------------------------------------------ACCCGCCCGGGATGGTCAGCGTGGCACCAGGAGGAATA-CCAGCAGCC---------ATGGAGGGCATCATGCCCG s fr1.chrUn 323959080 66 - 349519338 --------------------------------------------------------------------ACCCACCGGGTGTAGTTGGAGTGGCTCCAGGCGGCATC-CCAGGGGCG---------TTAGAGGGCATGGTGCCCG s danRer1.chr14 11290548 144 + 34612130 GACTGCCTTTAGTGTGTCTATAGTTTGGCTGTGTATTTGTAAACAAGACTCCCTTCTTTGTCGTAGGTTTCCTGCAGGGCTGATTGGCGTAACCGCGGGTGGGCTGACCGGCACCGGGGCCCGGAGTGGAGGGCATTGTGGCTG a score=5149.0 s hg17.chr17_random 2325648 5 + 2618010 ATCTG s panTro1.chrUn_random 25581696 5 - 240967748 ATCTG s mm5.chr7 12439877 5 - 133051633 ATCCA s rn3.chr19 58577365 5 - 59223525 GTCCA s canFam1.chr28 5169235 5 - 42450431 ACCCG s galGal2.chr6 2466409 5 - 33893787 ACCCG s fr1.chrUn 323959080 5 - 349519338 ACCCA s danRer1.chr14 11290548 5 + 34612130 GACTG a score=151407.0 s hg17.chr17_random 2325713 128 + 2618010 GAGACATCCCAGTGACTGACAACCTCCC--------AACAGTGGTACATCCTTCCCAAGGGCCCTCTCCCAA-CAGCCCACAAAACACGGGGACAGTCGAGAGCATCCCAACGAGCAATAGCAG-----AGAATGCCGGAAG s panTro1.chrUn_random 177651628 128 - 240967748 GAGACATCCCGGTGACTCACAAACTCCC--------GACAGTGGCACATCCTTCCCAAGCGCCCTCTCCCAACCAGCCCTC-AAACACGGGGACAATCGAGAGTACGCCAACGAGAAATAACAG-----ACAATGCCGGAAG s mm5.chr7 12439943 129 - 133051633 GGGGCATCCCCGTGACTCACAACCTCCC--------CACAGTGGCACACCCCTCCCAAGCTCCTTCCCCCAACCAGCCCACAAAACACGGGGACAATCGAGAGCACCCCAACGAGCAATAGCAG-----AGAATGCCTGAAG s rn3.chr19 58577430 118 - 59223525 -----------GTGACTCACAACCTCCC--------CATAGTGGCCCACCCTTCTCAAGCTCCCCCCTTCAACCAGCCCACAAAACACGGGGACAATCGAGAGCACTCCAATGAGCAATAGCAG-----AGAAAGCCTGAAG s canFam1.chr28 5169301 129 - 42450431 GAGGCATCCCCGTGACTCACAACCTCCC--------CACAGTGGCACACCCTTCCCAAGCTCCCTCTCCCAACCAGCCTACAAAACACGGGGACAATAGAGAGCACCCCAATGAGCAATAGCAG-----AGAATGACGAACG s galGal2.chr6 2466475 129 - 33893787 GGGGCATCCCTGTGACTCACAACCTCCC--------CACGGTGGCACATCCTTCCCAAGCTCCGTCTCCGAACCAGCCCACGAAACACGGCGACAACAGGGAACATCCCAACGAGCAATAGCAG-----ATAATTTAAAACA s fr1.chrUn 323959146 134 - 349519338 GTGGGGTGCCCATCGCCCACACCCTGCC--------CTCTGGTACGCACCCCTCCCAGGCCCCGTCACCCAACCAGCCCTCCAAACACGGCGAGACCAGAGAGCACCTCACCGAGCAATAGCAGCCGAAGGGACGCGAGCGG s danRer1.chr17 8214764 134 + 35757233 GAGCTTTCTCAGT--CTGACTGCTTCTCTCGCTCAGCAGAGTCGCCCAGCCGCTCCCAGCCGTCTCTCCCGG-CGGCCTGCAAGACAAAATGTATACCTAAACAATGACAGGTAAATATTGCTG-----AAAGTCCCCGAAG a score=16396.0 s hg17.chr17_random 2325841 65 + 2618010 GTAA--TTAT-TCAGATATACTTGGGA-------ACAGTG-AAAAATA---GATAATCTAAGAGAAA------AAGAATCTG--ACG s panTro1.chrUn_random 177651756 72 - 240967748 GTAA--TCAT-TCAGATACACTTGGGAACAAGAGACAGTG-AAAAATA---GATAAACTAAGAGAAA------AAGAATCTG--ACG s mm5.chr7 12440072 53 - 133051633 CTAA-------TCCGATAAACTTGGGACCAAGAGACAGTA-GAAAACG---GAT---------------------GAATTTG--ATG s rn3.chr19 58577548 55 - 59223525 GT----CCAT-TCAGAGAAACTTGGGACCGAGAGACAGTA-GAAAATG---GAT---------------------GAATTTG--ATG s canFam1.chr28 5169430 71 - 42450431 GTCA--TCAT-TCAGATAAACCTGGGACCAAGAGACAGTGAAAAAATA---GATGAACTGAGAAAAG--------GACTTGG--ACC s galGal2.chr6 2466604 81 - 33893787 ACAAAATCCT-TCA-ATAAACTTGGGACCAAGAGACATTG-GAAAAAA---AAAAAAAAAAAGAGAACTACAAATGAATTTGATACG s fr1.chrUn 323959280 68 - 349519338 GAAA--CCATCTCA--------TCTGACCTGTTGTCACTC-AAAAACACCCGACCAACTGGGACCAA------GAGACAGTG--AAG a score=233201.0 s hg17.chr17_random 2325906 523 + 2618010 GCCTTTTTAGC--TGA-TTCCGGACATATGCATCATTGTTGTTGC-AGTGTTAAA----------------ACAAGAGCT---------------AGAAAA----CTGACAATGTCGTCTGCTTACGGAAGCTCTGAAAGACTAGGGTGTGATTTATTAACGCCC-AACTTCTATTATTGTGTGTTAAGTTT--TTCATCTGTGCATCAAATCACAAAGA-ATAAATAGAACTTTTCCCTTTATCAGTCCCTTAGGCACAGCAGGTCCTGAACACCCTGCTT-A-TATGTTGCATCAGCA-GTTCAAATATGA---AAATAAAAACCAT-GAAGAGGAAATCCGCATCCTGTGACTGGAGTCCCTTCAGTCTACAGGGACTGGTTACCGCTTTTTGCTAATAGGAAGATT-------------ACATTACTAGAAAA---------------TGTG---------GAGTAAACTGTTTGCCTGTGG------TAAACACCTGCATGCAAAGGATTGAAGACAGTACCGGCTCCTGTACAGAGACGCGTCTCTCACATCTGAGCTGCATATTGAG-CGGCAAGTTGGTTGTAAGTTCAGTAAAAGCCGC-TGAT----------------------GATGC s panTro1.chrUn_random 177651828 527 - 240967748 CTCTTTTTAGC--TGA-TTCTGTACGTACGC-TCATTGGTATTGCGGGTGTTAAAACT-------------ACAAGACCT---------------AGAAAA----CTGAAGATGTCGTCTGCTTACGGAAGCTCTGAAAGACTAGAGTGTGATTTATTAACAACC-AGCTTCCGTTATTGTGTGTTAAGTTT--TTCATCTGTTCGTCAAATCACAAAGA-ATAAATACAACTTTTTCCTTTATCAGTCCCTTGGGCACAGCAGGTCCGGAACACCCTGCTC-AGAATGTTGCATCAAGA-CTTCAAACATCA---AAATAAAAACCATGGAGGAGGAAATCCCCATCTTGTGACTTGAGTCCCCTCAGTCTACAGGGACTGTTTACAGCTTTTTGCTAATAGGAAGATC-------------ACATTACTAGAAAA---------------TGTG---------GAGTAAACTGTTTGCCTGTGG------TTGACACCTGCACGCATAGGATTGAAGACAGTACCGGCTCCTGTACAGAGAAGCA--TCTCACATCTGAACTACATACTGAGAGGGCAAGTTGGTTCTAAGTTCAGTAAAAGCCTC-CGAT----------------------AATAC s mm5.chr7 12440125 506 - 133051633 GTCTTTTAAAC--TGA-TCCTGGACA------TCACTGATACTGC-AGTGTTAAAGCT-------------ACAAAAGCT---------------AGAAAA----CTGAAGATGGTATCTGCTTCCAGAGGTGTGGGAAGACTAGGACGTGA-TTATTAACGACC-AACTTCTGTTATTGTGTGTTAAGTTT--TTCATCTGTGCATCAAATCACAAAGA-ATAAATAGAGCTTTT-CCTTTATCAATCCCCTGGGCACAGCAGGTCCTGCAGAGCTTGCTCTAGAATGTTGCATCAAGAGCTCCGAATATC-----AATAAAAA--GT-TGAGAGGAAATCCCCATC--AAGACT--AGTCCCTTTGGTCTCCAGGGGCTGGTGCC-----TCTGCTGATAGGAAGATT------------AAAATTAAGCCAAGA---------------TGGG---------GAGGACATTGTTTGCCTGT-G------TAGACATCTCCACGCACAGGATTGAAGA-AGTAAAAGCTCCTATACAGAAGG-----TTTCACATCTGAGCAGCA----GAG---------------TCGGTTCAGTAAAACCCTC-TGATACAAAAAAAAAAAAAAAACAAAAAAAC s rn3.chr19 58577603 489 - 59223525 GTCTTTTAAAC--TGA-TCCTGGACA------TCAATGATACTGC-AGTGTTAAAGCT-------------TCAAAAGCT---------------AGAAAA----AC-AAGATGGTATCTGCTTCCAGAAGTGTAGAAAGACTAGGATGTGA-TTATTAATGACCAAACTTCTGTTAGTGTGTGTTAAGTTT--TTCATCTGTGCATCAAATTACAAAG-----AATAGAGCTTCT-CCTTTATCAATCCC-TGGGCACAGCAGTTCCTGGGCAGCTTGCTGTAGAATGTTGCATCAAGAGCTCCGAATATC-----AATAAAAA--AT-TGAGAGGAAATCCCCATC--AAGGCT--AGTCCCTTTGGTCTCCAGGGGCTGGTGCC--TCCTTTGCTGATAGGAAGATT------------AAAATTAAGACAAGA---------------TGGG---------GAGGACATTGTTTGCCGGT-G------TAGACATCTCTGCGCACAGGATTGAAGA-AGCAAAAGCTCCTGTACAGAAGG-----CTTCACATCTGAGCAGTG----AAG--------TCAGTTGTGAGTTCAGTAAAACCCTC-TGAT----------------------AATAC s canFam1.chr28 5169501 535 - 42450431 GTCTTTTGAAC--CGA-TTCCGGACATATGCATCATTGACGTTGC-AGTGTTGAG-------------------AGAGCTCGAAGCCGAGGCGTGGGAAGG----CTGAAGCTGTCATCTGGTCACGGAAGTGCGGAAAGACTAGGACGTGATTTATTAACGACC-AACTTCTGTTCTTGTGTGTTACGTTC--TTCATCTGTGCATCAAATCACAAAGA-ATAAATAGATCCTTTTCCTTTATCAGCCCCTTGGGCACAGCAGGTCCTGAACACCTTGCTCTAGAATGTTGCATCAGGAATTCCAAACGTCAAATAAAAAAAAAATAC-TAAGAGGATATCCCCCTCCTATGACTCTAGTCCCTTTGGTCCATGGGGGCTGGTGAC-CTCTTTTGCTGATAGGAAGATT------------TAAATTACTACCAAA---------------TGGG---------GAGAAAACTGTTTGCCCGTGT------TAGACAACT----GCGTAGGATCGAAGACCGTACAGGCTCCTGTACAGAAGTC----TCTCCCATCTGAACTGCATACTGAGCGGGCGAGTTGGTTCTGAATTCAGTAAAACCCTCTTGAT----------------------GATGC s galGal2.chr6 2466685 560 - 33893787 AAATTTGTAACGTTGATTTTTGGACAGATGCATCGTCGATGTTCC-GGTGTTACCGATGCGGTGATAGCAGCCAAGACTG---------------GGGAGAAGCCCTGAAGAAGGCACCTGCTCACCGAGATGTGATACGTTAAGGAT-CGA------AATGATC-GACTTCTGTTCTTGTGTGTTAAGTTTCCTTCATCTGTGCATC-AATCACATGAATAAAAATAAGATTTCTTTTCCCCTCCATTCCTTGGGAAGAACAGGGTGTCCGCACCCGTTTCCAAACAATTGCATTAAGCAATCCTTACCGAGTTAACGTAGAAA--TG-GAAGAGGAAA-CCACGCC--GTGGCTTCAGCCCTTTCCTT------GCTCTGGTTCC----CTCTGACAGAAGGAGGCACCAGCACTGGCTCAGCAGCGGAAGAAAAACCAATGACATCCTTTGTGCAGCCTCCCGGGGCCGATGTGTGCCAGCAGAGCTCCTGCAAGGCTGGGGGCACGGGGCTGGGAG-GGCAGAAGA------ACAAAGCAGCACTCCTCCCTGCCCAGCTCTC-AGTGAG--------GCAGCTGCGCACACATCCGCGCCCTG-CAGT----------------------GATGC a score=100.0 s hg17.chr17_random 2326428 1 + 2618010 C s fr1.chrUn 316538478 1 - 349519338 C a score=4255.0 s hg17.chr17_random 2326429 16 + 2618010 AAA--------------AAAAAAA-----------------AAAAAA- s panTro1.chrUn_random 177652355 13 - 240967748 -----------------AAAAAAA-----------------AAAAAA- s mm5.chr7 12440631 33 - 133051633 AAA--------------AAAAAAAAAGGAAAAGAACAAAAGAAAAAA- s rn3.chr19 58578092 26 - 59223525 AAA--------------AAGGAAA-------AGAACAAAAGAAAAAA- s canFam1.chr28 5170036 46 - 42450431 aaaaaaaggaaacaaagaaaaaaagaaaaaaaaagaaaga-aaaaaa- s fr1.chrUn 316538479 16 - 349519338 -AA--------------AAAAAAA-----------------AAAAAAG a score=62693.0 s hg17.chr17_random 2326445 51 + 2618010 GTATTAAGTTTCA-----CAAGTTGTTAGTAATCAAGTATATTTTCTCAGTTTCAG s panTro1.chrUn_random 177652368 51 - 240967748 GTATTAAGTTTCA-----CAACCTGTTTGTAATCAAGTATATTTTCTCAGTTTCAT s mm5.chr7 12440664 51 - 133051633 GTATTAAGTTTCA-----CAAGCTGTTTGTACTCAAATCTATTTTCTCAGTTTCAG s rn3.chr19 58578118 51 - 59223525 GTATTAAGTTTCA-----CAAGCTGTTTGTACTCAAATATATTTTCTCAGTTTCAG s canFam1.chr28 5170082 51 - 42450431 gTATTAAGTTTCA-----CAAGCTGTTTGTACTCAAATATATTTTCTCAGTTTCAG s galGal2.chr6 2467303 51 - 33893787 GTATTACGTTTCA-----CACACTATTTGTACTCAAATATATTTTCTCAGTTTTAA s fr1.chrUn 316538495 56 - 349519338 GTGTTCATTTTCATTGTTCGATTTGCTCCTAAATTGATTTTTTTCATTGTTTTCAG a score=34866.0 s hg17.chr17_random 2326496 37 + 2618010 ATCCTCTGCGATTTTATTGAGTGG-AAAGTCTTGCGCT- s panTro1.chrUn_random 177652419 37 - 240967748 ATCCTCTGCTATTTTATCGAGTGG-AAAGTCTTGCACT- s mm5.chr7 12440715 37 - 133051633 ATCCTCAGCTATTTTATTGAGTGG-AAAGTCTTGGACG- s rn3.chr19 58578169 37 - 59223525 CTCCTCAGCTATTTTATTGAGTGG-AAAGTCTTGGAGA- s canFam1.chr28 5170133 37 - 42450431 ATCCTCAGCTATTTTATTGAGTGG-AAAGTCTTGAGCT- s galGal2.chr6 2467354 39 - 33893787 ATCTGCAGCTATTTTATCAAGTGGAAAAGTCTTGGGCTG a score=225455.0 s hg17.chr17_random 2326533 199 + 2618010 GAAAGGGTTCAAGAAAAATAATAT-TGCATTTCCTTATGTCACAGG-AAACACTTTTA----ATGGTAACTTGTCAGA-------CTATGAACAAA-------CCCACTTTTTAAGATATTGATAAAG-TCTTCTTTTCTTCA-------------CGTGATATTT---TATACAAGT-ACACTTCAG-ATG---TATTGGATGTGGCTGA-TTTTAACAAATCCTATTAGATTTGTATCAA s panTro1.chrUn_random 177652456 203 - 240967748 AAAAGCGTTCAAGAAAAATAATATATGCATTTTCTTATGTCACAGG-AAACACTTTTA----ATGGTAACTTGTCAGA---TGGTCTATGAA-AAA-------CCCACTTTTTAAGACACTGATAAAG-TCTTCTTTTCTTCA-------------CGTTGTGTTT---TACACAAGA-ACAGTTCAG-ACG---TATTCGATGTGACTGA-TTTTAACAAATTCTATTAGATTTGCATCAA s mm5.chr7 12440752 203 - 133051633 AGAAGGGTTCAAGAAGAATAATGT-TGCATTTCCTTATGTCTCAGG-AAACACTTTTT----ATGGTAACTTGTCAGA---TTGTCTATGAACAAA-------CCCACTTTTTTAGACATTGATAAA----TTCTTTTCTTCA-------------CGTGATATTT---TATACAAGA-ACACTTCAG-ATGTGCTATTAGATGTGACTGA-TTTTAACAAATCCTATTAGATTTGTATCAG s rn3.chr19 58578206 204 - 59223525 AGAAGGGTTCAAGAAGAATACTGT-TGTATTTCCTTATGTCTCGGG-AAACACTTTTT----ATGGTAACTTGTCAGA---TTGTCTATGAACAAA-------TCCACTTTTTTAGACATTGATTAAA---TTCTTTTCTTCA-------------TGTGATATTT---TACACAAGA-ACACTTCAG-ACATGCCATTAGCTGTGACTGA-TTTTAACAAATCCTATTAGATTTGTATCAG s canFam1.chr28 5170170 205 - 42450431 AAAAGAGTTCAAGAAAAATAATGT-TGCATTTCCTTATGTCTCAGG-AAACACTTTTT----ATGGTAACTTGTCAGA---TTGTCTATGAACAAA-------CCCACTTTTTTAGACATTGATAAA--TCTTCTTTTCTTCA-------------CGTGATATTT---TATACAAGA-ACACTTCAG-GTGTGTTATTAGATGTGACTGA-TTTTAACAAATCCTATTAGATTTGTATCAA s galGal2.chr6 2467393 206 - 33893787 GAAAGGGTTCAAG---AATAATGT-TGCATTTCCTTATGTCTCAGG-AAACACTTTTT----ATGGTAACTTGTCAGA---CTGTCTATGAACAAAC------CCCACTTTTTTAGACATTGATAAAAGTCTTCTTTTCTTCA-------------CGTGATATTT---TATACAAGA-ACACTTCAGAACGTGTTATTAGATGTGACTGA-TTTTAACAAAGCCTATTAGGTTTGTATCAA s fr1.chrUn 323960211 224 - 349519338 GAAAGGGGTAAAGCAAA------C-CCAACTTTCTAATGACTCAGGAAAACACTTTTTGCAGATAGTTTATTCCCAGAATTTTGTCTTAGAGGAAAAAAAGAGACTACTCTGGTTAGTCTGGATA----TTTTCTCTCCTCCCTCATTCTCTCCATTGTGGTATTTTTATATACGAGGTGCATCCCCG-------TTTTTGGTGTTAAAGAGTTTTGAAGAGTCCTGTTAGATTTGTATTGC a score=180481.0 s hg17.chr17_random 2326732 207 + 2618010 TTAGTTACATGTTC---TATTCATAGTCTTTTGTGA--ATCATTGCC----------------------TTTTTGTTT-AAAAA--GATGGCCTATTTTGAGCCTTTGTATAAG--------------TACAT-----TCCTGT-TTTTGTG-------ACAAAAGAAAAA--------------------------CTTTAAATTTGTCCCAAAGAGAAAAA-----TAATGGCTATCAGAAGTATGCTTT--GTTT-----TAGTGCGAGTTACCGTT--ACTGTATTTGTGTATTGTA-AAG s panTro1.chrUn_random 177652659 215 - 240967748 TTAGTTACATGTTC---TATTCATAGTCTTTTGTGA--ATCATTGTC----------------------TTTTTGTTT-AAAAA--GATGGCCTATTTTGATCCTTTGATTAGG--------------TACATT---CTCCCGT-TTTTGTA-------AGAAAAGAAAAAT------------------------TTTTTAAA-TTGTCCCAAGCAGAAAAA-----TAATGGCTATCGGAAGTACGTTTT--GTTTTAGTGTAGTGCGAGTTACCGTT--ACTGTAGTTGTTTATTGTA-AAG s mm5.chr7 12440955 211 - 133051633 CTAGTTACATGTTC---TATTCATAGTCTTTTGTGA--ATCATTGCC----------------------TTTTTGTTT-TTAAA--GATGGCCTATTTTGAGCCTTTGTATAGG--------------TACAT-----TCCTGT-TTTTGTGACACAAAAGAAAAAAAAAA--------------------------CTTTAAA-CTGTCCCAAACAGAAAAA-----TAATGGCTATCAGAA--ATGTTTT--GTTT-----TAGTGTGAGTTATCGTT--ACTGTATTTGTTTATTGTA-AAG s rn3.chr19 58578410 205 - 59223525 CTAGTTACATGTTC---TATTCATAGTC--TTGTGA--ATCATTGCC---------------------TTTTTTGTTT-TTAAA--GATGGCCTATTTTGAGCCTTTGTATAGG--------------TACAT-----TCCTGT-TTTTGTG-------ACAAAAGAAAAA--------------------------CTTTCAAACTGTCCCAAACAGAAAAA-----TAATGGCTAT-AGAAGTATGTCTT--GTTT-----TAGTGTGAGTTTCCATT--ACTGTATTTGTTTATAGTA-AAG s canFam1.chr28 5170375 230 - 42450431 CTAGTTACATGTTA---TATTCATAGTCTTTTGTGA--ATCATCGCC----------------------TTTTTGTTT--AAAA--GATGGCCTATTTTGAGCCTTTGTATAGG--------------TACAT-----TCCTGT-TTTTGTG-------ACaaaaaaaaagcaaaaaaaaacgacaaaaaaaaaaaCCTTTAAAACTGTCCCAAACAGAAAAA-----TAATGGCTATCGGAA--GTGTTTT--GTTT-----TAGTGTGAGTTACCGCT--ACTGTGTCTGTTTATTGTA-AAG s galGal2.chr6 2467599 207 - 33893787 CTAGTTACATGTTA---TCCTCATAGTCTTTTGTGA--ATCATCGCC----------------------TTTTTGTTT-TTAAAACGATGGCCT-CTTTGAGCCTTTGTATGGG--------------TACAT-----TCCTGT-TTCTGTG-------ACAAAGAAA-----------------------------TCTTAAG-CTGTCCCCAACAGAAGAAGAAACCAATGGCTATCAGCAGTATGTTTT--GTTT-----TAGTGT--GTTACCGTT--ACTGTATTTGTTTATTGTA-AAG s fr1.chrUn 323960435 221 - 349519338 CTAGTTAAATGTTCCTATAACCATAGTCCTCTGTGA--GCTACCCTCTCCCTCCCTCCTCCTTCTCTTTTCTTTGTTT--TATT--GAAGGCCAGGTT-----CTTCGGGCA--------------------------TCCTGTACTCTGTAAGAGCA-ATAGCAGAAACT--------------------------CGTTTAG--TGTCCCAACAATAGCAG-----AAGAGGCAGCCAGCAGTATGTTTTTGTTTT-----TAGTGTGAGTATT--------TGTATTTGTTTCTTGTACAAG s danRer1.chrNA 270061121 213 + 390413307 TTATTTACCTGTGC---TGTTCCTGGTCAAAGGTGACCGCCATAGCA----------------------AATTAATGGGACTAA--AATCATCCATTATGTCTAATTCTATAAAATCCTGTCAAACACTACATTGAGACCTTGT-TT------------ACAGCTAAAGAA--------------------------GGTTAAA-------------TAAAAA-----TAATGGTTTTGAAAAATGTTTTCT--GTGC-----TAGTTTAAGAGACCGGTCAGTTTTGTCCAGGAACAGTA-AAG a score=14472.0 s hg17.chr17_random 2326939 8 + 2618010 GTGGACAT s panTro1.chrUn_random 177652874 8 - 240967748 ATGGACAT s mm5.chr7 12441166 8 - 133051633 GTGGACAT s rn3.chr19 58578615 8 - 59223525 GTGGACAT s canFam1.chr28 5170605 8 - 42450431 GTGGACAT s galGal2.chr6 2467806 8 - 33893787 GTGGACAT s fr1.chrUn 323960656 8 - 349519338 GTGAACAT a score=8662.0 s hg17.chr17_random 2326947 27 + 2618010 TC--TAATTA-----------------CATTAAAATGTAATTAGAA s panTro1.chrUn_random 177652882 39 - 240967748 -------TTAGCATTCAGTGCAGTTTTCAATAAAATGTAATTAGAA s mm5.chr7 12441174 38 - 133051633 T------TTAGCATTCAGTGCAGTTTTCAATAAA--GTAATTAAAA s rn3.chr19 58578623 38 - 59223525 TA-GCATTCA-------GTGCAGTTTTCAATAAAAAGTAATGAAAA s canFam1.chr28 5170613 39 - 42450431 TTAGCGTTCA-------GTGCAGTTTTCAATAAAAAGTAATAAAAA s fr1.chrUn 323960664 27 - 349519338 -------TTAGCATTCAGTGCAGTT------------CAAATAAAA a score=3342.0 s hg17.chr17_random 2326974 27 + 2618010 aaaagtgcttaatgaacaaaaacagaa s panTro1.chrUn_random 177652921 27 - 240967748 AAAACTgcttaatgaacaaaaacagaa s canFam1.chr7 76905852 20 - 83037113 aaatttgttt-------aaaaaaaGAA a score=3331.0 s hg17.chr17_random 2327001 21 + 2618010 catagacaacaa-aa----gaatatt s panTro1.chrUn_random 177652948 21 - 240967748 catagacaacaa-aa----gaatatt s mm5.chr3 35553887 25 + 160575607 TTAAAATATCAA-AAAATTGAATCTC s canFam1.chr7 76905872 22 - 83037113 CAAAGACATGAACAA----GAGTATT a score=4570.0 s hg17.chr17_random 2327022 50 + 2618010 -------agaagtgatgcatgaagaaaacgagatat----caataaaaagatttttaaaaa s panTro1.chrUn_random 177652969 53 - 240967748 aga----agaagtgatacataaagaaaatgagatat----tgataaatagatttttaaaaa s mm5.chr3 35553912 60 + 160575607 ATACATGAGAAGATTTGGAGGAAAGAAATG-GATATTGTACGATTAAATTAATCTCAAAAA a score=84391.0 s hg17.chr17_random 2327072 1228 + 2618010 ccaagaaaaattgtgactctgaagaacacagtaactatattaaaaatttaatcagcagtcacaaaagtggatttaata-aagcagaaaaaattagacagttgataacattgcacttataaatactgattcatgaaaacaaattttttaaacagaatagagaaaaaatgaaaattgggacttacttacagcacaccaccaagtggaccactgtatttataaaaggagtcttagaaaaacagtataggagaaaaataataaagaggatatttttaaaaagtagctgagaactccctagatGACAAGGTAATTAAACaa-gaagaaatcatgctaaacaaaaaccttcaactggaataatttcacttcagaa--aaaaaagttaagcatttccaaaacaaataaaagttgagtgtgttactgaccactggaacactgctaaaggaaatgtaaaagaaagtctatcacgtccaaaaatgacaatatatgctgcacagcgtcataaaagcatatgaaaatagaaagctctctattaaatgtaaatacataaacagctatagaaacctctactgtcataatgatggtGCACAAAACTTTCACGTTATTGCTATGGAATTTAAAAAATGAAGCAGAAAGCTGCATAAATATGGGTTCATAGATACTCAATAAGAAAAGATAACAAgtgatattaataacaaagtgggggtataaagaggtaaagctttgcattccattgaaatatagtcattatatattgtcataactttaagatgttttatgaagtctttatttctcaagatgatta-caaaaaaacctgtagatggtatgcagaagcaaatgagaaagaaactgaatcatgtcactacaaaatcaatgaagaaaaataaagcagtaagagaaaaaaatgataaataacacatctacaagaaacacagaagacaattccaaataataatagtaacttcattaactacagtaattacttcaaatacaaaaagttaaataccttaaacaaaatgcagaaaatgatttaatggattaagaacaaagaagatccagcaatgtactctctacaagagtcattttagctctaaggacccaaataagttgaaagtagcagtataaagaaaatatattttatgcaaagagtagctacaattggaggggcatggtcataattatattaaacaaaatatattttaagttaaaaattttaaaaagagacagattgttatt s panTro1.chrUn_random 177653022 1209 - 240967748 cc---aacaattgtgaatctgaagaacataatagctatattaaaaatttaatcaacagtcacaaaagcaga-ctaatacagggagaaaaaattacacagttgacgacattgtagttataaatactgagtgatgaaaacaaattatttaagcagaatgaagaaaaaagta----tgggacgtatt----gcacaccatcaagtggaccattatatttatgaaaggagtcttacaaaaacaatataggagaaaagtaataaagaggttatttttaaaaagtagctgagaaatccccagatGACAACGTAATTAAACaaggaagaaatacttccaaacaaaaaccttcaactggagtaatatcacttcagaaataaaaaaactaaacctttccaaaataaataaaagttgagtgtgttactaaccactagaaccgtcctaaaggaaatgtaaaag--agtctatcacgtccaaaaatga-aatg-atgctgcacagcatcataacagcacatgaaaatagaaagctctctattaaaggtaaatatataaacaggtaaagaaatctctactgtcataatcatggtGCACAAAACTTTCAAAATATTGCCATGGAGTTTAAAACATGAAGCA-AATTCTGCataaatttgtgttcttaga----ccataaggaaagataatatgtgatattaataaaacagtgggggtgtgaagaggtacaactttgcattcagttgaaatatagttgttatatactgtcataactttaagatgatttatgaagtctttatttctcaggatgattaccaaaaaaacctgtagaatgtaagcaaaggcaaatgagaaagaaattcaatcacgtcactacaaaatcaacaaacagaaataaagcagtaagag-aaaaaatgataaataacacatctacaagaaacacagaagacaattacaaataataa-agtaacttcattaactgcagtaattacttcaaatataaaaagttaaataccttaaagaaaat-taataaataatttaatggaataagaacaaagaagatccagcaatgtgctctctacaagagtcacttcagctctaaggactcaaataagttgaaagtaacagtataaagaaaatatattttatgcaaacagtagctacaattggagggccatggtcataattatactaaacaaaatatattttaaatcaaaaatatgaacaagagacagattggtatt a score=147151.0 s hg17.chr17_random 2328302 1946 + 2618010 gtaacggtgacatggattaacttgcaagaaatccataacaataatttagaaatcatatatata--ATTTGAAAAATCTGCAAAAATATACCATTGGGATTTTGataaaaattacattaaatttttatattactataaataaCACTGATA----tctttcttatttttttttttggagatagagtttctgtctcccaggctggaggacaatggcacgatctcgcgattggctcacttcaacctccacctcccaggttcaactgattctcGTctttcaaatatgtaaaaccaatattgacagaagtcaagcaagaaatatatagcaacacaacaattgcggactccaagactccactttcaataatgactagaatagtcagatgtaatatcagtaagaaagccaaacctgaacattatagacctaacaagcatttacagaactctgcgatcgaaagcagcaaaatatgcaatattctcaatcacacatggcacattctgttaggatacatgtcttattaaatttaagaaaactgaagtcatgcaatgtaaatgaaactagaa---atcaaaagcaagaaaatgtttcagatacgtaaataagaggaaattaagcaagatCTTACATATAGTCTTGCTCAAGTGTCAGGTgatttaatattgttaagatgtcagggccggcacgtgactcatgcctgtaatcccaggactttgggaggccaaagtgtgtggatcacttgagatcagaagtttgagactagcctggccaacatggcaaaaccctatctctactaaaaatacaaaagttagctatacatgttggtgcatgactgtaatcccagctactctggtggctgagactggagaattgcttgaacatgggaagcagagcttgcagtgagcacagctc-acaccactgcccttcagcctgagtgactcactaaaactccatctccaaaggaaaaaaaaaaa-------gttgtcagtattacccatgatgatataaaaatgtaatgtaattttcatctaaatcccaat-ggtattttttttgca-gaatttttgtgtat-aattctaaaa-gttgttt-aggaactgtgacta-ggcaaacaccctttaaaaaggacaaagagttattacattttctgatttaaaatcatgatacaaagctacaaaaataaaaacaatatggtattgccacaaaaacggatacatagatgatgaaacagaatagacatcctggaaataaaccctcgcatacgtgataaaataatcttccatatgctttccatgaccatgcaatagaaaaataagaatctctttaacaaagaattttcaaaattgaatgtttacagag-caaaaataaagttggatgcttcttttgtattatacataaaaagaaaagttgttttataatggatttaatgcttaaacataaaaactaataaaattcttagaagtaaacataggggaaaagtttatgacataagtcttaaaa--ctttgcttaagtatgacatcaaattcataagaaacaaggaaaaGAACAA-----AAAAGAAAGGAACTACATTAACCTTCAAGTATTCTACACATCAAGGAAAA-ATTTAGTGGCATACAAATGTCACCTAATAAGTGGGTGAAACctgggcatgctggctcatgcctataattctagaaatttaggaggccaagtcagaacgatcatttgaggccaaaagtttgagactagccatgaaaatatatcaagaccctgtctTGTATAGGGTAATATATGTGCATACATACATACATATAACAAAAAAGTGTAaaaatattttctaatcacatatttcgtaggtgttaatttccaaaagatataaacttctaaaattcaacaac--aacaaaatgttaataacttgatttagaatggtaaatgtttgaaatgacctttctccaaagaagacatagaaatgactaggtatttaaaaggatactcG s panTro1.chrUn_random 177654559 1968 - 240967748 gtaatgctgagatggattaactttccaggaatctataacaataatttataaatcatatatatataatTTGAAAAATCTGCAAAAATATACCATTGAGATTTTGACAGAAATTACATTAAATTTTTGTATTACTATAAATAGCACTGACAtctttctttcttttttttttttttagag--agagtttctttctctcaggctggagggcagtggcacgatctcgcgataggctcacttcaacctcctcctcccaggttcaactgattctcGTctttcaaatatgtaaaacaaatattgacagaagtcaagcaagaaatacatagcaacacaacaatggtggacttcaagactccactttcagtaatgactagaatagtcagaagtaatatcagtaagaaagccaaacctgaacattatagacccaactagtatttacagaactctccaatttaaaggagcaaaatctgcaatattctaaatcacacatggtacattctgttaggatacatgtcttattaaatttaagaaaattgaagccatacaatgtaaatgaaactagaatacat--aaagcaagaaaatgtggcaaatatgtaaataagaggaaattaagcaaaatCTTTCATATAGTCTTGCTCAAGTGTCAGGTGACTTAATATTGTTAAGATGTCAGGGCCGGCATGAggctcatgcctgtaatcccaggactttgggaggccaaagtgggtggatcacttgagatcagaagtttgagactagcctagtgaatatggcaaaaccctatctctactaaaaatacaaaagttagctagatgtgatggtgcatgactgtaatcccagctactctggtggctgagactggagaattgcttgaacctgggaagcggagcctgcagtgagcacatctcaacacc-ccgcccttcagcctgagtgactcactaaatctccatctccaaaaaaaaaaaaaaaaaaaaaaTGTtgtcagtactactcatgatgatataaaaatgtaaggtaatttttgtcaaaatcccaatgggtattttttttgcacgaatttttgtgtataaattctaaaaggttgcttaaggaaaggtgactacgccaaacaccctttaaaaagaacaaagcggtattacattttctgattcaaaatcatgatacaaagctacaaaaataaaaacaatatggtattgccacaaaaacagatacatagatgatgaaacagaatagagatcccagaaataaacccttgcatatgtgataaaataatcttccataagctttccatgaccacacaatagaaaaataagaatctatttaacaaataattttccaaattgaatatttacagagaaaaaaataaagttggatgcttcctttgtatcatatataaaaagaaaagt--ttttaaaatgaattcaatacttaaacataaaacctaataaaattcttagaagtaaacataagggaaaagtttatgacataagtcttaaaactctttccttaagtttgacatcaaattcataagcaacaaggaaaagaacaacgaccaaaa-aaagggactacattaagcttcaactattctacacatcaaataaaacaTTTAGTGCCATACAAACGTCACCTAATAAGTGGGTGAAagctaggcatggtgtctcatgcctttaattctacaactttaggaggccaaggcagaacaatcacttgaggccaaaactttgagactagccatgaaaacatagcaagaccctgtctTGTATAGGGTTACAGATATGCATACATACATACATATAACAaaaaagagtaaaaatattttctaatcacatatttggtaggtgttaattttcaaaatatataaattcctaaaactcaacaacaaaacaa---gttaataacttgatttagaatggcacatgtttgaaatga-ctttctccaaagaagacatagaaatgactaggcatttaaaaggatactcg a score=3161.0 s hg17.chr17_random 2330248 34 + 2618010 TCCGAGGGCAGGACTATGGGAGGCTGCCCTGTAC s panTro1.chrUn_random 127259603 34 - 240967748 TCTGAGGGCAGGACTATGGGAGGCTGCCCTGTAC a score=8430.0 s hg17.chr17_random 2330282 15 + 2618010 GGAAAATAAGAAGAA s panTro1.chrUn_random 127259637 15 - 240967748 GGAAAAGAAGAAGAA s mm5.chr11 75557797 15 - 121648857 GAAAAAGGAGAAGAA s canFam1.chr12 53478273 15 + 75455811 GGAAAACGAGAAGGA s galGal2.chr18 142248 15 - 8919268 GGAAGAGGAGGCGCA a score=27501.0 s hg17.chr17_random 2330297 51 + 2618010 ATGGCAGTAAAGAGGGCAAC-----CATCATTC------------CACCCAGCCCAAAAGGAATAAGA s panTro1.chrUn_random 127259652 51 - 240967748 ATGGCAGTAAAGAGGGCAAC-----CATCATTC------------CTCCCAGCCCAAAAGGAATAAGA s mm5.chr11 75557812 51 - 121648857 ATGGCAGTGATGATGACAAC-----CACCCTCC------------TCCCCAGACCAAAAGGAGCAGTA s rn3.chr10 59725223 56 + 110733352 ATGACAATGAGGAAGACAACACCGTCCCCCTCC------------CCCTCATTTGAAGAGGAGTAGGA s canFam1.chr12 53478288 63 + 75455811 ATGGCAATGAAGAAGACTGC-----TATGTTCCCATGCCCTTCCACCCCCAGACCAAAAGGAGTAGTA s galGal2.chr18 142263 48 - 8919268 ATGGTAATGAAGATGACAGT-----CATATTCC---------------ACAGACCAAACGTAGTACCA a score=23797.0 s hg17.chr17_random 2330348 30 + 2618010 GAAACCCTATCTTTCAGGATTCTCAAGACA s panTro1.chrUn_random 127259703 30 - 240967748 GAAACCCTATCTTTCAGGATTCTCAAGACA s mm5.chr11 75557863 30 - 121648857 GGAACCCCATCTTCCAGGACTCCTGGGACA s rn3.chr10 59725279 30 + 110733352 AGGACCAGGCCTTACAGGATCCTTGAGCTA s canFam1.chr37 10333407 30 + 33897405 GAAACCCTGTCTTTCATGATTCTTGGGACA s galGal2.chr18 142311 30 - 8919268 GGAATACCGTCCTTCAGGACTCTTGGGACA a score=100.0 s hg17.chr17_random 2330378 1 + 2618010 C s galGal2.chr18 142341 1 - 8919268 C a score=24201.0 s hg17.chr17_random 2330378 47 + 2618010 C--AGTTTTCATGGAGTGATAATGAAAGG------AGCAGCAGCCGCCTTAATAT s panTro1.chrUn_random 127259733 47 - 240967748 C--AGTTTTCATGGAGTGATAATGAAAGG------AGCAGCAGCCGCCTTAATAT s mm5.chr11 75557893 55 - 121648857 CAGAGTCTTCAAGCAGCGACAGTAGTGGGAGCAGCAGCAGCAGCAGCATCAACAG s rn3.chr10 7425529 50 - 110733352 C--AGTCTTCAAGCAGTGACAGCGGTGGG---AGCAGCAGCAGCAGCATCAACAG s canFam1.chr37 10333437 55 + 33897405 CAGAGTCTTCAAGCAGTGATAGTGGTGGGagcagcagcagcagcagcatcagcag a score=154341.0 s hg17.chr17_random 2330425 186 + 2618010 CCCAGAGAGAGCAGGTGGACCAGAAAGCAACTTAAACCAGATTGTTACTGAA--------------CCCAATGCAAACTTTCCCCAGTTCTTGCATGAGGGGTATGTACCATGCCAAGGTCTTTACTCCCATATCAACCAGACCTTGAAGGAGGCTCACTTCAACAGCCTGCAGCAGTGAGGGCAAGCTCCAACATGATG s panTro1.chrUn_random 127259780 186 - 240967748 CCCAGAGACAGCAGGTGGACCAGAAGGCAACTTAAACCACATTGTTACTGAA--------------CCCAATGCAAACTTTCCCCAGTTCTTGCATGAGGGGTATGTACCATGCCAAGGTCTTTACTCCCATATCAACCAGACCTTGAAGGAGGCTCACTTCAACAGCCTGCAGTAGTGAGGGCAAGTTCCAACATGATG s mm5.chr11 75557948 200 - 121648857 CCCAGACAGGGCCAGTGGGCCAGAGAGCAGCCTGAGCCACACCATCCCCGGATCCTGCCCCAGCACCCCCACACACACGCCCCCCAGCCGATGCCTGAGCAGTCTGCACTATGCCAAGGCCCTTACTTCCACATCAACCAGACCCTGAAGGAGGCTCACTTTCATAGCCTACAGCACCGAGGCCAGCCGCCGACAAGATG s rn3.chr10 7425579 186 - 110733352 CCCAGACAGGGCCAGTGGGCCAGAGAGCAGCCTGAGCCACATCATCCCTGGA--------------TCCTGCCCCAGTACCCCCCAGCCGATGCCCGAGCAGTCTGCACTGTGCCAAGGCCCTTACTTCCACATCAATCAGACCCTGAAGGAGGCTCACTTTCACAGCCTACAGCACCGAGGCCGGCCTCCGACATGATG s canFam1.chr37 10333492 185 + 33897405 cCCGGACAG-GCAGGCGGGCCGGAGAGCAGCTTGAACCACACGGCTGCTGAG--------------TCCGGCCCTCACACCCCTCAGCCTGTTCCCGAGCAGTCTGCACTGTGCCAAGGCCCTTACTTCCACATCAACCAGACCCTGAAGGAGGCCCACTTTCATAGCCTACAGCACCGAGGACGGCCTCCAACATGAAG s galGal2.chr18 147378 186 - 8919268 cCCTGACAGAGCGAGCGGCTCAGAACCCAGCCTGAACCCCATAGTTACGGGA--------------TCCAGCCCTGTCTCCTCTCAGTCCTTCCATGAGCAATCTGCACTAAGTCAAGGTCCTTACTTCCACATCAACCAGATCCTGAAGGAGGCACACTTCCACAGCTTACAGAGCCGGGGACGCCCTCCTACATGATG a score=4970.0 s hg17.chr17_random 2330611 14 + 2618010 AATTAGGACTTCCT s panTro1.chrUn_random 127259966 14 - 240967748 AATTAGGACTTCCT s rn3.chr10 7425765 14 - 110733352 CTCCGGCAGTTTCT s canFam1.chr37 10333677 14 + 33897405 TGCCGGCAGTTTCT s galGal2.chr18 147564 14 - 8919268 AACCAGCAGTTCCT a score=81212.0 s hg17.chr17_random 2330625 170 + 2618010 -----------------TATTCCAACCTAA-ACTGTGTTTATAAAAGTA----ATTGCATACAAACTAAAAAAAAA-GTCTATTGGTTTTTAAGTCTAAATTT-----TAAGTAACAAGTTAATGGGCAGTAGTTTAATTGGGGTTTTACTTCACTGCTATACTTTTAAAGGGGC-TGTGAATAAATGTTTATGAAATT s panTro1.chrUn_random 127259980 169 - 240967748 -----------------TATTCCAACCTAA-ACTGTGTTTATAAAAGTA----ATTGCATACACACC-AAAAAAAA-GTCTATTGGTTTTTAAGTCTACATTT-----TAAGTAACAAGTTAATGGGCAGTTGTTTAATTGGGGTTTTACTTCACTGCTGTACTTTTAaaggggc-tgtgaataaatgtttatgaaatt s mm5.chr11 75558201 173 - 121648857 -----------------TATTTCAACTTAATGATTTGTTTTTAAAAG-------TTGCACACAGAAGAAAAAAAAATGCCTATCGGTTTTC-CGTCTGTATTTGAGTGTGAGTGCCGGGTCAGCAGGT-GCTACTTACTCAGGGTTTTGCTGCACTGTTGCGACTTCGGAGGGGCTTGGGAGCAGTTTTTTATAGGATT s rn3.chr10 7425815 165 - 110733352 -----------------TATTTCAACTTAATGATTTGTTTTTAAAAG-------TTGCACACACACACAAAAAACT-GCCTGTTGGCTTTC-AGTCTATATT------TGAGTACCGGGTCAGCAGGC-GCTGTTTACTT-GGGTTTTGCTGCACTATTGCGATTTCAGAGGGGCTTGGGAGCAATTTTTTATAGGATT s canFam1.chr37 10333727 158 + 33897405 -----------------TATTTCAACTTAT-GA--TGTTTTAAAAAA-------TTGCAC--------AAAAATAT-GCCTGTTGGCTTTTCAGTCTATATTT-----GAAATAACAGGTCAACAGGCAGTTGTTTACTTGTGGTTTTGCTGCACTATTGCAATTTCAAAGGGGCTTTGAAGCAATTTTTTATAGGATT s galGal2.chr18 147578 195 - 8919268 TGCCTTCTGTGAAGGGACAGCACTGTGTAG-ATTGGATATTTCAACTTAGTTTGTTAAAATGAAATTGCACAAAAC-GCCTGTTGCCTTTTCAGTCTATATTTGAAATGAAATAACAGGTTAACAGGAAATTGTTTACTTGTGG-TTTGCTGCACTATTGCAATGCAAAAGGGGCTTTGAAGCAA-TTTTTATAGGATT a score=122796.0 s hg17.chr17_random 2330795 1392 + 2618010 AAAAAaat------aaaaaataaaaggatactcgacatcactcttctagaaaaatgcaaagcaaagtcacaataatctacggcctcaagccgatatttaaaatagtatgacagctcttcaaaaaatttaaaatgagattattatataatccagcaaacccccttctggctatgtacttaaaatgtacaacgcagatctggaagagatatttgcacaaccaaatttattgcaatattattaacacaagccaaaaggcagaaacaatccagatgtcccttgaccaatgaacagattaataacaagtggcacatacacaaagtcgaatattattcagtctttaaaaagacacattatatgataattctggagaagatcatgttaattgaaataagccaggaacaaagtgacagtctatgattccattcataatcaggtatcttaagtagataaactcataggaaaaaaaagttagaatggtgcttgtcaaggactgaagagatggtaaaatgggcagttgttttattttttatttttttattttttttatttttttaaattatactttaagttttagggtacatgtgcacattgtgcaggttagttacatatgtatacatgtgccatgctggtgtgctgcactcactaactcgtcgtctagcattagttgtatttcccaatgctatccctcccccctccccccaccccacaacagtccccagagtgtgatattccccttcctgtgtccatgggatctcattgttcaattcccacctatgagtgagaatatgcagtgtttggttttttgttcttgcggtagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacgttttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaataatgccacaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatgcccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgacttccacaatggttgaactagtttaca-gtcccaccaacagtataaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattgtaactgatgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagcgatgatgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtcctttgcccactttttgatggggttgtttgttt s panTro1.chrUn_random 127260149 1391 - 240967748 aaaaaaataaaataaaaaaataaaaggatactcgacatcactcttctagaaaaatgcaaaacaaagtcacaataatctatggcctcaagccgatatttaaaataatatgacagctcttcaaaaaatttaaaatgagattattatataatccagcaaacccccttctggctatgtacttaaaatatacaacgcagatctggaagagatatttgcacaaccaaatttattgcaatattattaacacaagccaaaaggcagaaacaatccagatgtcccttgaccaatgaacagattaataacaagtggcacatacacaaagtcgaatattattcggtctttaaaaagacacattatatgataattctggagaagatcatgttaattgaaataagccaggaacaaagtgacagtctatgattccattcataatcaggtatcttaagtagacaaactcacaggaaaaaaaagttagaatggtgcttgtcaaggactgaagagatggtaaaatgggcagttgttTTATTTTTTATTTTT---ATTTttttattttttt-tattatactttaagttttagggtacatgtgcacattgtgcacgttagttacatatgtatacatgtgccatgctggtgcgctgaacccactaactcatcatctagcattaggtatatctcccgatgctatccctcccccctccccccaccctacaacagtccccagagtgtgatattccccttcctgtgtccatgggatctcattgttcaattcccacctatgagtgagaatatgtggtgtttggttttttgttcttgcgatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattattggacatttgggttggttccaagtctttgctattgtgaataatgccacaataaacatac----gcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgagtcaaatggtatttctagttcttgatccctgagggatcgccacactgacttccacaatggttgaactagtttacaggtcccaccgacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattccaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgttttttggctgcatagatgtcttcttttgagaagtgtctgttcatgtccttcgcccactttttgatggggttgtttgttt a score=150752.0 s hg17.chr17_random 2335697 1803 + 2618010 atccgctattagtctgatgggcttccctttgagggtaacccgacctttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcgaggagtatctttgtggcgttctctgtatttcctgaatctgaacgttggcctgccctgctagattgtggaagttctcctgaataatatcctgcagagtgttttccaacttggttccattctccccatcactttcaggtacaccaatcagacgtagatttggccttttcacatagtcccatatttcttggaggctttgttcatttctttttattcttttttctctaaacttcccttctcgcttcatttcattcatttcatcttccattgctgataccctttcttccatttgattgcatcggctcctgagtcttctgcattcttcacgtagttctcgagccttagttttcagctccatcagctcctttaagcacttctctgtattggttattctagttatacattcttctaaatttttttcaaagttttcaacttctttgcctttggtttgaatgtcctcccatagctcagaggaatttgatcgtgtgaagccttct---ctcagctcgtcaaagtcattctccatccagctttgttccgttgctggtgaggaactgcgttcctttggaggaggagaggcgctctgcgttgtagagtttccagtttttctgttctgttttttccccatctttgtggttttatctacttttggtctttgatgatggtgatgtacagatgggttttcggtgttgatgtcctttctctttgttagttttccttctaacagacaggaccctcagctgcaggtctgttggaataccctgctgtgtgaggtgtcagtgtgcccctgctggggggtgcctcccagttaggctgctcgggggtcaggggtcagggacccacttgaggaggcagtctgctggttctcagatctccagctgcgtgctgggagaaccactgctctcttcaaagctgtcagacagggacatttaagtctgcagaggttactgctgtctttttgtttgtctgtgccctgcccccagaggtggagcctacagaggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcccggctgctttgtttacctaagcaagcctgggcaatggcgggcgcccctctcccagcctcgctgccgccttgcagtttgatctcagactgctgtgctagcaatcagtgagattccgtgggcgtaggaccctccgagccaggtgcgggatataatctcgtggtgcaccgttttttaagccggtgtgaaaagcgcaatattcgggtgggagtgacccgattttcc---------aggtgc-gtccgtcacccctttctttgacttggaaagggaactccctgactccttgcacttcccaagtgaggcaatgcctcgccctgcttcggctcgcgcacggtgcgcgcacccactggcctgggcccactgtctggcactccctagtgagatgaaccgggtacctcagatggaaatgcagaaatcacccatcttctgcttccctcaggctgggagctgtagaccggagctgttcctattcggccatcttggctcctctctcTTGCTTCACTGTTAAAGGGGTAATGTTCTATCTAAAACTTGGAGTCAGCTGATATAAAAGTTTTAACTCTTAAGTGGAGATAGGGATGCTATGTAGCAAGATTGCTGACCTGCAtgcatggcttaacacttgccttgcactgcc s panTro1.chrUn_random 28229101 1803 - 240967748 atccgctgttagtctgatgggcttccctttgtgggtaacccgacctttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgctcttctcgaggagtatctttgtggcattctctgtatttcctgaatctgaacgttggcctgccttgctagattggggaagttctcccggataatatcctgcagagtgttttccaacttagttccattctccccatcactttcaggtacaccaatcagacatagatttggtcttttcaaatagtcccatatttcttggaggctttgctcgtttctttgtattcttttttctctaaactttccttctcacttcatttcattcatttcatcttccattgctgatacactttcttccagttgatcacatcggctgctgagtcttctgcattcttcacgtatttctcgagccttggttttcagctcc---------tttaagcacttctctgtatttgttattctagttatacattcttctaaatttttttcaaagttttcaacttctttgtcttcggtttgaatgtcctcccatagctcagagtaatttgaccatctgaagccttcttctctcagctcatcaaagtcattctccatccatctttgttcatttgctggtgaggagctgcgttcctttggaggaggagaggcgctctgatttttagagtttccagtttttctgttctgtttttttcccatctttgtggttttatctacttttggtctttgatgatggtgatgtacagatgggtttttggtgtgcatgtcctttctgtttgttagttttccttctaacagacaggactctcagctgcaggtctgctggagtaccctgcagtgtgagttgtctgtgtgcccctgttggagggtgcctcccagttaggctgctcgggggtcaggggtcagggacccacttgaggaggcagtctgccggttctcagatctccagctgcgtactgggagaaacactgctctcttcaaagctgtcagacagggacatttaagtctgcagagggtactgctgtctttttatttgtctttgccctgcccccagaggtggagcctacagaggcaggcaggcctccttgagctgtggtgggctccacccagttcgagcttcccggctgctttgtttacctaagcaagcctgggcaatggcgggcgcccctcccccagcctcgctgccgccttgcagtttgatctcagactgctgtgctagcaatcagcgagactccgtggg-gtaggaccctccgaaccaggtcggggatataatctcgtggtgcaccgttttttaagcccgtcggaaaagcgcagtattcgggtgggagtgacccgattttcccgattttccaggtgctgtccgtcacccctttctttgattaggaaagggaactccctgaccccttttgcttcccgagtgaggcaatgcctcgccctgcttcgcctcatgcacggtgcgctc--ccactgacctgcgcccactgtctggcactccctagtgagatgaaccccgtacctcagatggaaatgcagaaatcacccgtcttctgcgtcgctcaggctgggagctgtagaccggagctgttcctattcagccatcttggctcctccctcTTGCTTAACTGTTAAAGGGGTAATGTTCTATCTAAAACTTGGAACCAGCACATATAAAAGTTTTAACTCTTAAGCGGAGATAGGGATGCTATGTACCAAGATTGCTGACCTTGAGGCATGGCTT-ACACTTGCCTTGCACTGCC a score=70854.0 s hg17.chr17_random 2337500 848 + 2618010 ttaaattgtgacaataatttggtattatattgccacagagtcagttttgtcagtcttatgatctctattttaacattagtgctgatgatttgttgtacctaaagagcaaacagaggtacaacagcaaacaggtgtgtaacaaggcctgtctgtctcctcctgttctgtgtgggagatgctgatgggagaagaaaagacacacacacaatacctttaagggtaaacaacttttttatcccatgtaaatggtattgcagatatctatatctatatctatatttttatctatctatatatatgtatgtatgtatctatctatctatatctatatctatgtatatgtactcaccagactatacagcattcatggccagatggggaagcaacagcctaggctccagagttggctactacacccaccagactatggaggattcaCttttcagcttcaagatcaccgctggaagctcagggacttcccatattccaggatagaaactcctccagttctccctcttggcaattgaatggtcggggggaactgaccttagtgaaaattgggtatctaaattagtggaatttgaacctttgactgtgcatgaagtgctgcaggggatttcagtcagcaaaggagatgccagggggatctcttagcatagatggtgcttgcttactgcttataagttaatgtgttgagatagaaatcaattg-ctacaagataaatgtaagctggaaaaagaaaacactactctgacttccagact-ggccctgg---ctcaatttcaggcctatgtcttgactgatcaggct-caaagctaacagattattgatgagaaaaacagctgtgcaag s panTro1.chrUn_random 239006260 837 - 240967748 ttaaattgtgacaataatttggtattatattgccacagagtcagttttgtcagtcttatgatctctattttaacattagtgctgatgatttgttgtacctaaagagcaaacagaggtacaacagcaaacaggtgtgtaacaaggcctgtctgtctcctcctgttctgtgtgggagatgctgatgggagaagaaaagacacacacacaatacctttaagggtaaacaac-tttttatcccatgtaaatggcattgcagatatctatatcta------------tatctatctatatctatgtatgtatgtatctatctctctatatctatatctatgtatatgtactcaccagactatacaccattcatggccagatggggaagcaacagcctaggctccagagttggctactacacccACCAGACTGTGGAGGATTcacttttcagcttcaagatcacggctggaagctcaggaacttcccaccttccaggatagaaactcctccagttctccctcttggcaattgaatggtccgggggaactgaccttagtgaaaattgggtatctaaattagtggaatttgaacctttaactgtgcatgaagtgctgcaggggatttcagtcagcaaaggagatgccagggggatctcttagcatagatggtgcttgcttactgcttataatttaatgtgttgagataaaaatcaattgcctac-agataaatgtaagctggaaaaaaaaaacactactccgacttcccgactgggccctggcctct---tttcaggcctatgtcttggacgatcaggctccaaggctaacagattattgataaaaaaaacgcctgtgcaag a score=144357.0 s hg17.chr17_random 2340024 1614 + 2618010 ggccaagaatgcatttagcaactgggtagccaccgctgcaaaagaagtcaactgcagttagagctgccttttagtcgaattgccacaggctgcagggaatgggctcccttaaaaaattgtctctgccaacatttccaagtggttacatcactaccaagggggtcaggagaatagcacctgtaatcccacctggacttcttttaaccaaatcaaagagtctatttttgcccaagtctgacaaaaggagaaatccacttttgcaatgcatcaaaggcctttgtatcctacccaatatacttggaaagacatatacagggaacctaccataccggtagctgaactccatatggcaccgcacccccgctttgtctggaggccttaaatggctcttttaatgttactctggggtttctcccaccagacaattgtcaacacatactccaaatcaacagcattgtccccaatgaaacacaacctctttcctaaatctagatgcttccaaacatcactggttacaaatgcgccagaatccctgatggggtgtaccctataacagtgttctcctctgccactgatacaattctgtttcagcaaaaaatttaaatattaagcttacatgtagaaaaagctcttaatggtagtagcactggacttatgttgttatcagaggaatttgctcagttgtgtactgttgtgttgcaaaatcaaatggcattaggtatgcttacc-gcagcccaaagagcgtttcagccttgctgcatactgaattttgtgtgtgtatccctgacagttctcacaatattactctcctcgcccaagacatgcaaggacaagcaaaacaaaatctaactgtcaggaccccatcatgaattggctgtccaactggcattggcgttggccttggtgggtgcggtttttattaactgtgttttaattctcctctgcttaccctgcttctgtaacctctaccaattatgtattcctcgtatatctgtaagcgtattttcttacatttgagtatcaattgggacagaaTACGCagaaaaagttaaataatatatttaaactcaattgaacatggacacaaataatggtcaccaagtctcggaataggttttgtgagccccttgaggcattcatccagcactgtttcagagaaatctctatttcaatctattcctatactttagttattgaaaaacaacagacaacggcaaaagcaaa-ttgacctttttgtgttcctttgtgcatggatgagtggctgactctggagcccaggctgttgcttctcggtctggtgatgaatcctccatagt-ctatcctc---atatatatatatacacacacatttttttccttctccccttccc-actgc-aatttgcttattgtatcaatttg-cttattctatcatttgcttattatatctgcattgccatttatgtgggatcgagtttgttgacctttaaaggtattgtgtgtgtgtgttttcttcttccctggagcatctcctgtacataacacc-tctcttgctgtcatagccagaaattcagtttttaagtttttttctggggtcttcttgctcaagaggaagtatgttcagttgatacggggcttaga s panTro1.chrUn_random 39183939 1623 - 240967748 ggccaagaatgcatttagcaactgggtagccaccgctgcaaaagaagtcaactgcagttagtgctgcctattcatcgaattgccacaggctgcagggaacgggctcccttaaaaaattgtctctgccaacatttccaagtggttacatcactaccaagggggtcaggagaatagcacctgtaatcccacctggacttcttttaaccaaatcaaagagtctatttttgcccaagtctgacaaaaggagaaatccacttttgcaatgcatcaaaggcctttgtattctacccaatatacctggaaagacatatacagggaacctaccataccggtagctgaactccatatggcaccgcaccccc-ctttgtctggaggccttaaatggctcttttaatgttactctggggtttctcccaccagacaattgtcaacacatactccaaatcaacagcactatccccagtgaaacacaacctctttcctaaatctagatgcttccaaacatcactggttacaaatgcgccagaatccctaatggggtgtaccctataacagtgttctcctctgccactggtacaattctgcttcagcaaaaaatttaaatattaagcttacgtgtagaaaaagctcttaatggtagtagcactggacttatgttgttatcagaggaatttgctcagttgtgtactgttgtgttacaaaatcaaatggcattaggtatgcttacccgcagcccaaggagcgtttcagccttgctgcatactgaattttgtgtgtgtatccctgacagttctcacaatattactctcctcgcccaagacatgcaaggacaagcaaaacagaatctaactgtcaggaccccatcatgaattggctgtccaactggcattggcgttggccttggtgggtgcggtttttattaactgtgttttaattctcctctgcttaccctgcttctgtaacctctaccaattatgtattcctcgtatatctgtatgggtattttcctacaattgagtatcaattgggaccgaaTACGCagaaaaagttaaataatatatttaaactcaattgaacatggacacaaataatggtcaccaagtctcggaataggttttctgagcctcttgaggcattcatccagcactgtttcagagaaatctctatttcaatctattcctatactttagttattgaaaaacaacagacaacagcaaaagcaaacttgacctttttgtgttcctttgtgcatggatgagtggctgactctggagcccaggctgttgcttctcggtctggtgatgaatcctccatagttctatccttcatatatatatatatatatacacatttttttccttctccccttccccactgccaatttgcttattgtatcaatttggcttattctatcatttgcttattatatctgcattgccatttgtgtgggatcgagtttgttgacctttaaaggtattgtgtgtgtgtgttttcttcttccctggagcatctcctgcacataacaCcctctcttgctgtcatagccagaaattcagtttttaagtttttttctggggtcttcttgctcaagaggaagtatgttcagttgatacggggcttaga a score=51725.0 s hg17.chr17_random 2341638 357 + 2618010 attttatttatagcttTTATTACATTCTAAAACCCCCAGCAGAAACAAGTCTTAACAAACACAGATTTTAATTTCTGAACATTCTTCTAATAAGTTTTGCACAGGTA-------GCGGAACAACTAAAAAAACTGTTTTTT-GCATTGATGGTCTACCTCATTACAATTTAACCTCTAAAGGGTGTTTTAGTCAGCTCTAGAGTCTGCTACGGTTAAGGTGAATTTACTGCTTCTTCCCATAATAAAGAATGGTATTTTAAAATAACATAACTTCTATGGCATATATTTTTAAAGCATGACCACAATTTGAATAATTAGAACATTTAAAAATTCGAAATATTGTTATACTGACACTGCACCAAAA s panTro1.chrUn_random 39185562 352 - 240967748 attttatttttagcttTTATTACATTCTAAAACCCCCAGCAGAAACAAGTCTTAACAAACACAGATTTTAATTTCTGAACATTCTTCTAATAAGTTTTGTACAGGTA-------GCAGAACAACTAAAAAAACTGTTTTTTTGCATTGATGGTCTACCTCATTACAATTTAACCTCTAAAGGGTGTTTTAGCCAGCTCTAGAGTCTGCTACGGT------GAATTTACTGCTTCTTCCCATAATAAAGAATGGTATTTTAAAATAACATAACTTCTATGGCATATATTTTTAAAGCATGACCACGATTTGAATAATTAGAACATTTAAAAATTCGAAATATTGTTATACTAACACTGCACCAAAA s canFam1.chr25 38974768 353 - 54436876 ATTTTA--CATCACATATATTACTTCTTAAAACTCCCAACAGAAGGAAGTCTTAACAAATGCCAGGTTTAATTTCTGAACACTCTTCCAGTAAGATCTGTAAAGATGAAGGGGTGGGGGGAGAGAAAAGGACTTGCTCTGT-GTGCTCCTGGTCTGCGTCACCAACACTTGA--TCCTGGGCGGGTTCGTGGCAGCCACACAGGCTGCTCGGGTTCTGACAGAT----CACTTCTTTCCAGGGTAGAGAATGACATTTGAAAAGAACGTAACTGCTATGACACGAGGTTTCCAAACATGGCCTCAACCTGAAACGTTAGAGTACTTAAGAATTCTAAAGACTGGTGCAC---CACTGAGCCAGAA a score=89214.0 s hg17.chr17_random 2341995 339 + 2618010 TTTATCCTTCCAATGATGACAGGGaatttttaatagttgttatttttatagtaaaattaaa-ctttaataaaataaCTGACTTACAAACTTCAGCAAGAAG-ACACATATTCAGCCAGAGATATCAGTTCCCCTTTAGAAAAAAATACTCACTT---CTCATTAAAATCTCTCT----GTATCTTACTGATTTCAGATAGAATTTAAATTTCACCTTAATAACAGA----AACAAAAGAACTAGTTA-ATCTAACAAAAACTAATAAACGTATGCCCAAATTTACTGGCAGAATCATGGGTACGTCATATAATAGTAACATTCTACCAGTTTTAAGTAAAATAAATAAGGAAA s panTro1.chrUn_random 39185914 340 - 240967748 CTTATCCTTCCAATGATGACAGGGaatttttaatagttgttatttttatagtaaaattaaa-ctttaataaaataaCTGACTTTCAAACTTCAGCAAGAAG-ACACATATTCAGCCAGAGATATCAGTTCCCCTTTAGAAAAAAATACTCACTT---CTCATTAAAATCTCTCT----GTATCTTACTGATTTCAGATAGAATTTAAATTTCACCTTAATAACAGA----AACAAAAGAACTAGTTAGATCTAACAAAAACTAATAAACGTATGCCCAAATTTACTGGCAGAATCATGGGTACGTCATATAATAGTAACATTCTACCAGTTTTAAGTAAAATAAATAAGGAAA s mm5.chr7 117879693 306 - 133051633 TTTATCATT---ATAGCAACAGGGAATTCCTA-------------CTTTACTGAAATTAAAGCTTTA--AAAAAAAATGACAAACTAAC-----CAAGGAG--CAAATGCTCACCCAGAGA---CAGTCCCTTCT-----GACAGCACTGACCCCA-CTCATTGCAATGAT--------TATCCTAGTGATTTCAGCTAGAATGTTCAGTTCAGCTTGAAAACAGAAATGAACAACAGAACTACTTC-AGCTGAC--AAACTAATAAA-ATATGCTAAAACTTGCTGGTAGAGTCACTGGCACTTCACACAATGCTTAGACTCAACCAG-TTTAAGTAAAATAAATGAGGGAA s canFam1.chr25 38975126 341 - 54436876 TTTATTGTTCCAACTGTGACAGGGAATTTTTGATAGCTTT--TTATTATACTGAAATTAAA-GCTGAAT------ATTGATTTATAAACTATAACAAAAAGGACAAATGTTTAGCCAGAGATATCAGTTCCTCCT-GAAAAAGAATATTTACCTCCTCTTGTTGCAATTTTTCTTAAGGTATCCTAC-GATTTAAAATAGAGTTTAAAATTCACCTTAAAAATAGAAACAAACAGAAGGACTAGTTA-AACTGACAAAAACTAATAAAAATATGCTCAAATTTACTGACAGAATCGTGGGCACTTCACACAATACTTAGACTCTACCAGTTTTAAGtaaaataaataagaaaa a score=324.0 s hg17.chr17_random 2342334 9 + 2618010 TAATCTTAA s panTro1.chrUn_random 39186254 8 - 240967748 TAATCTTA- s canFam1.chr25 38975467 9 - 54436876 aaattataa a score=181424.0 s hg17.chr17_random 2342343 2027 + 2618010 CAGTGCAACCTACCAGGAGGGGCCTATCCCTACTCCCAGGTGAGTGGGAACCCTGCGCTCTGGGGGGGTTGCGCCTCAGCCTCTGGCACCTCTTGTTGGCAGCGTCGCCGTTGCAGGCACAGGGCAGGCGTTGGGGGACGTGCAGTGGGCCAGGCCCAGGCACGTCCTTTGCCAGGGGCTGGGCAGGTGCGGAGAGGGGCGGAGCGGTGCTGCCCTGGTCGAGGGAGCCTCCAGCTCTGGACAGTTTGCTGCCCCTGCCCCAGGGGGG-GTTAAAGGAGCTGAGTGGGGAAGCGGAGGGACGAGGGGATTCAGGCCAGGCCAGGTGGCCCTTTAGCCCTGGGTGATGCAGGAGGGGCTGTGGAAGACCAGAGAAGACCCGGAGCAGAAACTGGGAACTGATATCTCTGGCTGAATATTTGTCCTCTTGCTGAAGTTTGAAAGTCAGTTATTTCATTAAAGtttaattttattataaaaataGCAACTATTAAAAATTCCCTGTAGTCACTGGAATGATAATTTTTGGTGCCGTTTCAGCATAATAATCTTTGGAGTTTTTAGATATTCTAATTATTCAAATTGCGGCCATGTTTCAAAATATATGCCATATAATTTTATGGCATTCGCCTCTGTGTCCCTGTTGGCTCAGGAAACGTGCTTCTTCCTCCTTCCGCAGACTCGGATCAGGCCGCCCTTCCTCCTGGCGTCTGAGGCGGGCATGGGGACAGCCTGCCAGCGAATATCCTGACAATGCCCGGCCTGTGCCCTGTGCTCAGCGTGGGGTCCTGGTTGGTGCCCCTCAGAGCCCCTCACAAAGTAGCGCGACAGGTGTGGAAGGACCCAGCACCCGGCAGCGGTGAGCAGATGGATGCTCCAGGGATGTGGGGCAGCTGGCAGTCAAGAACCCACTGCCAAATTCAATGGCATAACGTTGCATATTTTTCCCTTATATTTTTGTGTAGGAGTTTTACAGCTTTCAGCCTTACATTtgtattttcttaacataggattccagaacaatgctacgagggtctgaatgcctgtcccacacgtaggattccagaacacatcagctgtggtctgaatgattgcccctcacatatgattccagaacagtcctgctgtggtctgaatgattgtgcctcacacagggttctagagcactcctcccctagtctgaatgtttgtccgtcagacaagattccagaacactgctgctgggttctgagtgtttgtccctcacatacaattccagaacactgctaggtgggtctgaatgtttgtacctcacataagattccagaacactgttatgagggtctgaatctttgtccctcacgtaggactccagaacactcctgctgtgttctgaatgtgatttcctaacataggattacagaacaatgctacgagggtctgaatgcttgtcc--cacaagtaggattccagaacactccagctgtggtctgaatgattgtccctcacataggattccagaacactgctgctgggttctgagtgtttctcccttacataggattccacaacagtgctacgagggtctcaatgtttgtcccgcacataggactccagaacactcctgctgtgttctgaatgtattttcctaacctaggaatccagaacagtgctacgagaatctgaatgcttgtcccacacttaggattccaggagatgccagctgtggtctgaatgatggtccctcatataagattccagaacaatgctgctgggttctgagtgtttgtccctcacataggactgcagaacactgctacgagggtctgaatgattgtacctcacataggattacggaacactcctgctctggtctgaatgtttgtccctcagatgggattccagaacactgagtttgggatctgagtgtttgtccctcacgtatgactccagaacactgcct-catggttgtaaatgtttgtccatcacataggattccagaacactgctatgaggg-----attgaaagtttgtcccgcacataggactccagaaca s panTro1.chrUn_random 39186262 2028 - 240967748 --GTACAACCTACCAGGAGGGGCGTGTCCCCACTCCCAGGTGAGTGGGAACCCTGCGCTCTGGGGGGGTTGCGCCTCAGCCTCTGGCACCTCTTGTTGGCAGCGTCGCCGTTGCAGGCACAGGGCAGGCGTTGGGGGACGTGCAGTGGGCCAGGCCCAGGCACGTCCTTTGCCAGGGGCTGGGCAGGTGAGGAGAGGGGCGGAGCGGTGCTGCCCTGGTCGAGGGAGCCTCCAGCTCTGGACAGTTTGCCGCCCCTGCTCCAGGAGGGCGCTGAAGGAGCTGAGTGGGGAAGCGGAGGGACGAGGGGATTCAGGCCAGGCCAGGTGGCCCTTTAGCCCTGGGTGATGCAGGAGGGGCTGTGGAAGACCAGAGAAGACCCGGAGCAGAAACTGGGAACTGATATCTCTGGCTGAATATTTGTCCTCTTGCTGAAGTTTGAAAGTCAGTTATTTCATTAAAGtttaattttattataaaaataGCAACTATTAAAAATTCCCTGTAGTCACTGGAATGATAATTTTTGGTGCCGTTTCAGCATAATAATCTTTGGAGTTTTTAGATATTCTAATTATTCAAATTGCGGCCATGTTTCAAAATATATGCCATATATTTTTATGGCATCCACCTCTGTGTCCCTGCTGGCTCAGGAAACGTGCTTCTTCCTTCTTCCGCAGACTCGGATCAGGCCGCCCTTCCTCCTGGCATCTGAGGCGGGCATGGGGATAGCCTGCCAGCGAATAGCCCGACAACGCCCGGCCTGTGCCCTGTGCTCAGGGTGGGGTGCTGGCTGGTGGCCCTTAGAGCCCCTCACAAAGTAGCGCGACAGGGGTGGAAGGACCCAGCACCTGGCAGCGGTGAGCGGATGGATGCTCCAGGGATGTGGGGCAGCTGGCAGTCAAGAACCCACTGCCAAATTCAATGGCATAACGTTGCATATTTTTCCCTTATATTTTTGTGTAGGAGTTTTACAGCTTTCAGCCTTACATTtgtattttcttaacataggattccagaacaatgctacgagggtctgaatgcctgtcccacacgtaggattccagaacacatcagctgtggtctgaatgattgcccctcacatatgattccagaacagtcctgctgcggtctgaatgattgtacctcacacagggttctagaacactcctctcctagtctgaatgtttgtccgtcagataagattccagaacactgctgctgggttctgagtgtttgtccctcacatacaattccagaacactgctaggggggtctgaatgtttgtacctcacataagattccagaacactgttacgagggtctgaatctttgtccctcacataggactccagaacactcctgctgtgttctgaatgtgatttcctaacataggattccagaacaatgctacgagggtctgaatgcttgtccagcacaagtaggattccagaacactccagctgtggtctgaatgattgtccctcacataggattccagaacactgctgctgggttctgagtgtttctccctcacataggattccacaacagtgctacgagggtctcaatgtttgtcccgcacataggactccagaacactcctgatgtgttctgaatgtattttcctaacctaggattccagaacagtgctacgagagtctgaatgcttgtcccacacgtaggattccaggagatgccagctgtggtctgaatgatggtccctcatataagattccagaacaatgctgctgggttctgagtgtttgtccctcacataggactccagaacactgctacgagggtctgaatgattgtacctcacataggattacggaacactcctgctctggtctgaatgtttgtccctcagatgggattccagaacactgagtttgggttctgagtgtttgtccctcacgtatgactccagaacact-cctacggggttctaaatgtttgtccctcacataggattccagaacattgctaagagggtccgcatta-----ttgtccctcacataagattccagaaca a score=19272.0 s hg17.chr17_random 2344382 342 + 2618010 tctgaatgtttgtccctcagataggattccagaacacagcttc--tgggttctgagtatttgtccctcacataggattccagaacactgctac-gtgggcctaaatgtttgtccctcacataggagtccagaa-cactgctgctttggtctgaatgtttgtccctcacttaggattccagaacactccttctgtggtctgaaagtttctccctcacaaaggattacagaacactgctcct--ggtttctgagtgtttgtcttttacataggattccagaacactgctacgagggtctgaatgtttgtccctcatataggattccagaacactactgctgtggtctgaa s panTro1.chrUn_random 39188302 343 - 240967748 tctgaatgtttgtccctcacataagattccagaaccctgctgcagtgg--tctgaatggctgatcctcacataggattccaaaacactcctgctgt-ggtctgggtgtttgttcctcaggtgagattccagaatcaatcttgctgtggtctgaatgtgtctccctcacataggattccaaaacattcctgctgtgatctgagtgattgttcctcaaataggattccagaacactgctactcggg--tctgacagtttgtccctcacataggattccagaacactgctacaagggtctgaattattctccctcacataggattccagaacactcctgctgtgatctgaa a score=22921.0 s hg17.chr17_random 2344814 425 + 2618010 tctgaatgtttccccctcagataggattccaaaacatttcttctct--------ggtctgagtgtttctccctcaaataggattccaaaacactgctactggagtctgaatgtttgtccctcacataggattccagaacactgctacgagggtctgaa--ttattctccctgacatagcattccagaacactcctgctgtgttccgaatgtttgtctctcactcaggattccagaacactcgtgctgtggtctgaaagtttgtccctcacttaggattccagaacactgctgttggtttctgagtg-tttgtac-ttaacgtaagattccagagcacagctacttgggtctaaatgtttgtccctcagataggattccagaacactgcta-agaggttctgaatgttt-gtccctcacatagcatttaagaacactgct s panTro1.chrUn_random 39188685 428 - 240967748 tctgagtgtttttccctcatgtaagattccagaaca--------ctgctacgtgggtctaaatgattgtgcttcaaatacgattccagaacactgcttctggggtctgaaagtttgtccctcacatcggattccagaacattcctgcagtggtctgaaagt--ttgtccctcacataggattccagaacactgatgctgtgttctgaatgtgtgtccctcacataggattccagaacactccttctgtgatctgaatgtttttccctgacaaaggattccagaacactgctgctgggttctgattgctttgttctttcacttaggattccagaacactgatatgagggtct-gatgtttgtccctcatataggattccagaacactgctgctggggttctgactgtttcttccttcacataggattccagaacactgcc a score=12755.0 s hg17.chr17_random 2345244 324 + 2618010 ggtctgaatgttt-tccctcacataggat----cgaagagcactgctgctgggatctgaatgtttt----tgggcacataggattccagaactctcctgatgtggtctttatgtttgtccctcacatagaattccagaacactgctgctgag-ttctgcttgtttgtccctcatttaggat-------------------------------------------------tcaagaacactcctgctgtgttctgaatgtgtgtctctcacataggattccagaacattgccaggagggtctaaatgtttctctgt----cacctaggattatagaaca---ctgctgctgggttctgagtgtttctccctcactttggattccagaaca s panTro1.chrUn_random 39189166 374 - 240967748 ggtctgaatgtttgtccctcatatgggattccac----aacactgctgctgggttttgagtgtttttccct---cacataggattccaggacacttctaagagggtcttaatgtttgtccctcacctaagattccagaacaatgctac-gagagtctgaaagtttgtccctcacataggatttctgaacactgctacaaatggtctgaatgtttgtcccgcacaagggagtccagaacactccagcggtgttctgaatgtattttcctcacataggattccagaacaatgctatgagggtttgcatgct----tgccccacacgtaggattccagaacatcccagctg-tgg--tctgaatgattgt-cctcacataggattccagaaca a score=64001.0 s hg17.chr17_random 2345592 1271 + 2618010 tccctcacataggactccaaaacactcctgctgtggtcggaaag-tttgtccctcacattggattccagaacgctgatgct---gtggtctgaatgtttgcccctcatataggattccagaatactcct--gatgtaatctgaatgtttgtacctcacataggattcctgaacactcctgctgtggtccgaatgtttgtccctcacatggcattccagagcactgctgctggggtctgaatgtttgtccttgacataggatttcacaaca---ctgctaagtgggtctgaatgtttgtcccttacttaggataccagaaaactcctgctgtactgtgaatgtttattcctcaaatacaattccagaacactgcttctgtagtatgaaaggctgtccctcacagaggattccagagcactggtagga-------aat-----------------------------------------tctgaatgtgagtccctaaca--taggattccagaacactgctgctgggttctgagggtttgtacctgcct----taggatttcaggacactgttacgagggtctgattgtttctccctcacataggattccagaacactgctgc-tgggtctgaatgtttgtccctcacataggattccagaacactgctaagagtgtctcaatgtttgtccctcacataggattccaaaacac------------------------------------------------tgctacgaggttctgaatgtgagtccctcacataagattccagaacactgctgctgtggtctgattgtttgtccctcacataggattccagaacactgccgct---------gt---------------------------------------ggtctgaatgtttgtccctcacataggattccagaacactcctgctgtggtctgaatgtttgtccctcacttaggattccagaacagtactgtggggttctgagtgtttgtccctcacgtatgattccagaacactgctactt-----gggtctaaa-tatttgtccctcacataggattccagaacactgctgctggggtctgaatgtttgtcccttacataggagtccagaacactcctgttgtagtctgaatgtttgtccctcacataagattccagaaca---ctgctgctggattccgagtgtttgt--ctc------------------------------------------------tcacataggattccagaacactcctacgggggtctgaatgtttgtccctcacataggattccagaacattgctaagagggtccgcattattgtccctcacataagattccagaacaatgctaacagggtctgaatgtttgtccctcacataag-attccagaa---ccctgctgcagtggtctgaatggctgatcctcacataggattccaaaaca s panTro1.chrUn_random 39189612 1463 - 240967748 tccctcacataggactccagaacactcctgctgtggtctg--agttttctccctcaaaaaggattccagagcac---tgctaaggcggtctgaatgtttgtccctcacgtaacattccagagcactgctacgaggt--tctgaatgtttatccctcacataggattccagaacactactgctgtggtctgagtggttgaccctcacatatgattccagaacactactgctgtggtctgggtgcttgtgcttcgcacgggattccagaacaatcctgct--gt-ggtctgaatgtttctcactcacataggatttcaaaacattcccgatgtggtctgagtgtttgtccctcaaataggactccataacactaccattggggtatgaatgtttgtccctcacataggattccagaacactgttacgagggtctgaattattctccctcacatagctttccagaatatgcctgctgtggtctgaatgtttgtccct--caattaggattccagaacactgccgttgggttctgag----tgtccgtgcctcacgtatgattccaaaacactgctacgtgggtctaaaggtttgtcccacacataggattccagaacactgctacaggggtctgaatgtttgtcccgcacataggactctagaacaccgctacgagggtctgaatatttatccctcacataggacttcaaaacactcctgccgtgttctcaatgtattttcctcacataggactccagaacaatgcgacgagggtctggatgcttgtcctacccataggattccagaacaccccagctgtggtctgcatgtttgtccctcagataggattccagaacactgctgcttgattttgagtgtttgtccctcagagatgattccagaacactgctatgagggtctgaatgtttgttcctcacatgagattcgagaacactcctgctgtggtctgaatgtttgtcccaaacctaggattccagaacactgttgctgggttctgagtgtttgtctctcacataggattccagaaca-----aatttacgagggtctgaattattt-tccctcacataggattccagaacactcctgctcttgtctgaatatttgtccttcacaaaggattccagaacactactgctgtgatctgaatggttgaccctcacacaggattccagaacatttctgctg-tgg--tctgggtgtttgtgcctcacatggggattccagaacaattctcactgtggtcttaatgtttctacttcacataagattccaaaacatttctgctgtggtctgagtgtttgtccctcaaaaaggattccagaatcctgttaggagggtctgaattat--tctctctgataggattccagaacacggctacgagagtctgaatgtttgtccctcaca-aagtactccagaagactcctgat---gtgttctgaatgtattttcctgacataggattccagaaca a score=60058.0 s hg17.chr17_random 2346875 1197 + 2618010 tctgggtgtttgttcctcaggtgagattccagaaca--------atcttgctgtggtctgaatg--tgtctccctcacata-ggattccaaaacattcctgctgtgatctgagtgattgttcctcaaataggattccagaacactgctactcgggtctgaaagtttgtccctcacataggattccagaacactgctaccagggtctgaattattctccttcacataggattccagaacactcctgctgtgatctgaaagtgtgtccctcccctaggataccagaacactgctgttgtgttctgagtgtttttccctcatgtaagattccacaacactgc--------------tgttgtgt-------------------------------------tctgagtgtttttcc------------------------------------------------ttcatgtaagattccagaacactgctacgtgggtctaaatgattgtgcttcaaatacgattccagaacacttcttctggggtctgaaagtttgtccctc------------------------------------------------acatcggattccagaacactcctgcagtggtctgaaagtttgtccctcacatagtattccagaacaatgatgctgtgttctgaatgtgtgtccctcacataggattccagaacactccttctgtgatctgaatgtttttccctgacaa--aggattccagaacactgctgctgggttctg-attgtttgttcttcacttaggattccagaacactgatatgagggtctg-atgtttgtccctcatataggattccagaac-------------------------------------------------actgctgctgggttctgactgtttctccttcacataggattccagaacactgccttgacggtctgaatgattatacctcacataggattccagaacactcctgccccggtctgaatgtttgtccctcatatgggattccacaacactgctgctgggttttgagtgtttttccctcacataggattccaggacacttctaagagggtcttaatgtttttccctcacataagattccagaacactgctacgagagtctgaaagtttgtccctcacataggatttctgaacactgctatgaatggtctgaatgttt-------------------------------------gtc------------ccacacaaaggagtccagaacactccagcggtgttctgaatgtattttcctcacataggattccagaacaa------------------------------------------------tgctatgagggtttgcatgcttgccccacacgtaggattccagaacatcccagctgt---ggtctgaatga-ttgtcct-cacatagga-ttccagaacactcctgctgt s panTro1.chrUn_random 39191087 1493 - 240967748 tctgaatgcttgtcccacacataggattccagaacaccgcaacga-------gtgttctgaatgattg--tccctcacatagggattccagaacaccccagctgtgttttgagtgattgtccctctcataggattccagaacactgctgctgtgttttgagattttctccctcacataggattccaaaagactgctacgaggttctgaattattctccctcacataggattccagaacacccctgctgtcgtctgaatgtttctccctcacatagggttccataacactactgctgggttctgagagtttttccctcacataggattccagaacactgctacgagggtcagaatgtt-tgtcccatcccatttaattccagaacaatcccgcttcttgtctgaatgtttgtccctcacataagattccagaactctgcagctgggttctgattctttgtctctcacgtaggattccagaacacttctacgagggtctgaatgtctgtccctcacataggattccagaacactgctgctgggatatgagtgtttgtccctcacataggattccagaacacggctacgagggtctgtattattctccttgacataggattccagaacactcctgctgtggtatggatgtttctccctcacttaggattccaatacaatactgctgtggtctgaatggttgtctctcacataggattccagaacaatcatgctgtcatctgagtgtttgtccct--caaataggattccagaacactgctacgaaggtctgtattattc-tccctcacataggattccaaaacaatgctacgagggtctgaatgtttttcccccacttaggattccggaacaccccagctgtggtctgaatgactgtcccctaacataggattcctgaaaactgctgctgggttctgagtgtttttccctcacataggattccaaaacactgctacgaggctctgaatgtttgtcccttacaaagggttccagaacactactgctgtggtctgaatatttgatcctcacataggattccaaaacacagctgctgggttcttagtgtttctccctcgcataggattccagaacactgctaagaaagtctgaatgtttgtccctcacataagaatccagaacactgctaagaggttctgaatgtttgtccctcacataagattcctgagcactgctacgag-ggtctgaatgtttctgcttcacatagcatttccagaacaccaatgctgtggtctgaatggttgaacctcacataggattccagaacactcctgctgtggtatggatgtttgtgcctcacatgggattccagaacaatcatgctgtcatctgagtgtttgtccctcaaataggattccaaaaccctgctacaaaggtctgtattattctccctcacataggattccagaaca---cggctacgagggtctgaa-gatttgtcccacacataggacttccagaacactcctgctgt a score=52119.0 s hg17.chr17_random 2348092 1018 + 2618010 acatggaattccagaacaatcctgctgtggtttgaatgtttttccctcacataggactccagaacactcctgctgtggtctga------gttttctccctcaaataggattccagagcactgctaaggc---ggtctgaatgtttgtccctcacgtaacattccagagcactgctacgaggttctgaatgtttatcccttccataggattccagaaccctactgctgtggtctgagtggttgaccctcacatatgattccagaacactactgctgtggtctgggtgtttgtgcttcgcatgggattccagaacaatcctgctgtg---gtctgaatgtttctcactcacataggattccaaaacattcctgatgtggtctgagtgtttgtcc--ctcaaataggactccataacactac---------------------------cat---------------------tggggtatgaatgtttgttcctcacataggattccagaacactgttacgagggtctgaattattctccctcacatagctttccagaatacgcctgctgt----ggtctgaatgtttgtccctcaattaggattccagaacactgccgttgggttctgagtgtccgtgcctcacgtatgattccaaaacactgctacgtgggtctaaatgtttgtcccacacataggactc---tagaacaccgctatgagggtctgaatatttatccctcacataggacttcaaaacactcctgccgtgctctcaatgtattttcctcacataggactccagaacaatgcgacgagggtctggatgcttgtcctacccttaggattccagaacaccccagctgtggtctgcatgtttgtccctcag-ataggattccagaacactgctgcttgatt-----tgtttgtccctcaga---gatgattccagaacactgctatgagggtctgaa---tgt--------------------------------------------ttgttcctcacatgagattcgagaacactcctgctgtggtctgaatgtttgtcccaaacctaagattccagaacactgttgctgggttctgagtgtttgtctctcacataggattccagaa s panTro1.chrUn_random 39192600 1078 - 240967748 acataggattccagaacaatgctacgagggtctgaatgcttgtcccacacgtaggattccggaacaccccagctgtggtctgaatgactg-----tccctaacataggattcctgaacactgct---gctgggttctgagtgtttttccctcacataggattccaaaacactgctacgagggtctgaatgtttgttcctcacaaaggattccagaacactactgctgtggtctgaatatttgaccctcacataggaatccaaaacactgctgctgggttctgagtgtttctccctcgcataggattccagaaca---ctgctacgaaagtctgaatgtttgtccctcacataagattccagaacactactgctgtggtctgaatggttgacccacccaa--aggattccagaacactcctgctgtggtctgtgggtttttgcctcacatgggattccagaagattcctgctgtgatctgagtgtttctccttcaaataggattcctgaacactgctacgagggtctgaattattctcccacacataggattccagaacactcctgctatgcgaggtctgaatgtttgtccctcacttaagattccagaacactgatgttgggttctgactgtttgtccctcacatacgattccagaaccctgctacgtgggtctaaatgtatgtccctcacataggattcctgtaagactc--ctacgagggtctgaatgttt-------------------------ctcccg-----------------------cacataggactccagaacactgctatgagggtctgaatgcttgtcccacacgtaggattaaagaacaactcagctgtggtctgaatgattgtcccctaacatgggattccagaatactattcctgggttctgagtgtttgtccctcacataggat--ttccagaacactgctatgagggtctgaaaattgtccctcacataggattccagaacactgctacgagcacctgaattattgtccctcacataggattccagaacactcctgctgtggtctgaatatttgtccctcacataggattccagaacactcctgctgtggtctgaatggttgaccctctcataggagtccagaa a score=36864.0 s hg17.chr17_random 2349141 832 + 2618010 cacataggattccagaacactcctgctcttgtctgaatatttgtccttcacaaaggattccagaacactactgctgtgatctgaatggttgaccctcacacaggattccagaaca--------------------ttt----------------------------ctgctgt-----------------------------------------------ggtctgggtgtttgtgcctcacatgggattccagaacaatcctc--ctgtggtcttaatgtttctact-----tcacataagattccaaaacatttatgctg-tgg--tctgagtgtttgtccctcaaaaaggattccagaa---tcctgttag-----gagggtctgaattattctctctgataggattccagaacacggctacgagagtctgaatgtttgtccctcacaaagtactccagaagactcct------gatgtgttctgaatgtattttcctgacataggattccagaacaatgctacgagtttctgaat-----gcttgtcccacacataggattccagaacacccccgctgtggtctgaatgattgtccctctcataggattccagaacactgctgctgtgttttgagattttctccctcacataggattccaaaagactgctacg-aggttctgaattattctccatcacatgggattccagaacacccctgct------gtcttctgaatgtttctccctcacatagtgttccataacactactgctgggttctgagagtttttccctcacataggattccagaacactgctacgagggtcagaatgtttgtcc--aacccatttaattccagaacaatcccgc---------tcttgtctga--atgtttgtccctcacataagattccagaactctgcagctgggttctgattctttgtctctcacgtaggattccagaac s panTro1.chrUn_random 39193709 929 - 240967748 cacatgggattctagaatactcctgctgttgtctaaatgtttgtcactcacataggattccagaacactactgctgtggtctgaatgattgaccctcacataggattccagaacactgctacgagggtctgtatgtttgtcccgcacgtaggtctccaggacactactgctgtattctgaatgttcttcctcaaataggatttcagaacaatgctatgagggtctgaatgtttgtgccacacgtagggatccagaaaaatcc-cagctgtggtcttgatg-----actgtccctcacataggattccagaacac---tgctgctggattctgagtgtttctccctcacataggattccagaacactgctgttggattctgagagttt------ttccctcacgtaagattccagaaaacagttatatgggtctatatgtttatccctaacagaggattccagagcactgctacgaagg------tctgaatgtttgtccctcacataggattccagaacactgctacaggtgtctgaattattctctt------cacataggattccagaacactcctgctgttgtctgaatgtttgtccctcacttaggattccagaacactgctgttgggatttgagtgtttgtccctcacgtacgattccataaccctgctacgtgggtactaaatgtttgtccctcacataggattccagaaca---ctgctacgagggtcct---aatgtttgtcctgcacataggattccagaacactcctgctgtgttctgattgtgttttcctgacataggattccagaacaatgctacgagtgtctgaatctttgtcccaaac---ttggattccagaa----cccaccagctgtggtctt-tctgacga------tctctcacataggattccagaacactgatgctgggttctgagtgtttctccctcacataggaatccagaac a score=49250.0 s hg17.chr17_random 2349985 955 + 2618010 gtctgaatgtctgtccctcacataagattccagaacactgctgctgggatatgagtgtttgt-ccctcacataggattacagaacacggctacgagggtctgtatttttctccttgacataggattccagaacactcctgctgtggtctggatgtttctccctcacttaggattccaatacaatactgctgt-----ggtctgaatggttgtctctcacataggattccagaacaatcatgctgtca---tctgagtgtttgtccctca--------------------------------------------aataggattccagaacactgctatgaaggtctgtattattctccctcacataggattccaaaacaatgctagaagggcctg----------aatgtttttcccacacttaggattccggaacaccccagctgtggtctgaatgactgtccctaacataggattcctgaaaactgctgctgggttctgagtgtttttccctcac------------------------------------------------ataggattccaaaacactgctacgagggtctgaatgtttgtcccttacaaaggattccagaacacta------------------------------------------------ctgctgtggtctgaatatttgatcctcacataggattccaaaacacagctgctgggttattagtgtttccccctcgcataggattccagaacactg----------ctaaga--------------------------------------gggtctgaatgtttgtccctcacataagattcctgagcactgctacgagggtctgaatgtttctgcttcacatagcatttccagaacaccaatgctgtggtctgaatggttgaacctcacataggattccagaacactcctgctgtggtatggatgtttgtgtctcacatgggattccagaacagtcatgctgtcatctgagtgtttgtccctcaaataggattccagagc---cctgcta-------------------------------cga--------------cggtctgtattattctccctcacataggattccagaacacggctacgagggtctgaagatttgtcccacacataggactccagaacactcct s panTro1.chrUn_random 39194650 1191 - 240967748 gtctgaatgtgtgtacctcacttaggtttccagaatactgctgttgggttctgagtgtttgtcccctcacatacgattccagaacactgctacgtgggcctaaatgtttgtccctcacataggattccagaacactcctcctgtggtctgaatgtttgtcccttacttaggattccag---aacactg--gtacgtgggtctaaatgtttgtccctcacttaggattccagaaca---ctgctgttgggttctgagtgtttgtccctcacatactattccagaacactggtacgtgggtctaaatgtccctctcataggattccagaacactactacgagtgtctgaatgtttgtccctcacataggattccggaacact----------cctgctgtggtctcaatgtttgtccctcacttaggattccagaacactcctgctgtggtctgaatgtttgtccctcactgaggattccagaacactgctgttgggttctgagtatttgtccctcacgtagggatccagaacagtgctacatgggtctaagtgtttctcccagatatgggattccagaacactgctacgagagtctaaatgtttgtccctcacataggattccagaacactgctacgagggactgaatgattgtacctcacataggataccagaacactcctgctctcgtctgaatgtttgtccttctaataggattccagaacactgctgctactttctgagtgtttatccctcacataggatgccagaacactgctgctggggtctgagattttgtctctcacataacattccagaactctgctgctgggttctgagtgtttgtccctatcatacgattccagaacactgttgcgaggttctgaatgtttgtccctcacatagga-ttccaggacactactgctgtggtctgaatggttgaccctcacataggattccagaacactcctgctgtggtctgggtgtttgtgcctcacatggcattccagaataatcctgctgtggtctgaatatttctccctcacataggattccaaaacattcctgctgtggtctgagtgtttgttcctcacttaggtttcgagaactctcctgctgtggtctgaatgtttgtcccttacataggaatccagatcactgcttctgggttctgagtgtttgtccttcacataggattccagaacactgct a score=78040.0 s hg17.chr17_random 2350962 1740 + 2618010 ctaacataggattccagaacaatgctacgagggtctgaatgcttgtcccacacgtaggattccggaacaccccagctgtggtctgaatgactgtccctaacataggattcctgaacactgctgctgggttctgagtgtttttccctcacataggattccaaaacactgctacgagggtctgaatgtttgttcctcacaaaggattccagaacactac-----tgctgtggtct--at--ttgaccctcacataggaatccaaaacactgctgctgggttctgagtgtttctccctcgcataggattccagaacactgctacgaaagtctgaatgtttgtccctcacataagattccagaacactactgctgtggtctgaatggttgacccacccaaaggattccagaacactcctgctgtggtctgtgggtttttgcctcacatgggattccagaagaatcctgctgtga---tctgagtgtttctccttcaaataggattcctgaacac---tgctacgagggtctgaattattctccctcacataggattccagaacactcctgttatggtctgaatgtttgtccctcacttaagattccagaacactgatgttgggttctgactgtttgtccctcaagtacgattccagaaccctgctacgtgggtctaaatgtatgtccctcacataggattcctgaagactcctacaagggtctgaatgtttctcccgcacataggactccagaacactgctatgagggtctgaatgcttgtcccacacgtaggattaaagaacaactca---gctgtggtctgaatgattg--tccctaacatgggattccag---aatactac-----tc----------------------------------------ctgggttctgagtgtttgtccctcacataggattccagaacactgctatgaggg-----tctgaaaattg-----tccctcacataggattccagaacactgctacgagcatctgatttatt------------------------------------------------gtccctcacataggattccagaacactcctgctgtggtctgaatatttgtccctcacataggattccagaacactgctacgagggtctgtatgtttgtcccgcacgtaggtctccaggacactactgctgt---------attctgaatgttcttcctcaaataggatttcagaaca---atgctatgagggtctgaatgtttgtcccacac---gtagggatccagaaaaatcccagctgtggtctggatgactgtccctcacatagg------------------------------------------------attccagaacactgctgctggattctgagtgtttctccctcacataggattccagaacactgct---gttggattctgagagtttttcccttacataagattccagaaaaca--------gttatatgggtc----tatatgtttatccctcacagaggattccagagcactgc-----------------------------tacga--------------------aggtctgaatgtttgtccctcacataggattccagagcactgctacaggggtctgaattattctct-tcacataggattccagaacactcctgctgttgtctgaatgtttgtccctcacttaggattccagaacactgctgttgggatttgagtgtttgtccc-tcaagtatgattccagaaccctgctacgtgggtctaaatgtttgtccctcacataggattccagaacactgctacgagggtcct--------aatgtttgt--cctgcacataggattccag-aacactcctgctgtgttctgattgtgttttcctcacataggattccagaacaatgctacgagtg------tctgaatctttgtccc------aaacttggattccagaa s panTro1.chrUn_random 39195863 1887 - 240967748 ctcacataagattccagaacactgctacgaggatctgaatgtttgtctcacacgtaggattccagaacaccctagctgtggtctgaatgattgccccacacaaagcattctacaatactgtcgctggtttctgagtg-ttgtccctcaaatagaatt-cagaacactgctacgagggtctgaatgtttgcccctctaataggattccagaacactgcgacgatg----ggtctgaattattgtcccttatgtagaattccataacactgcttttgggttctgagtgtttttccctcatgtttgattccagaacagtgttacatgggtctaaatgtttgtccctcacataggactccagaacactgctacgagggtctgaatg------------------------------------ttggtc------------cctcacataggattccagaaca---ctgctacaagcgtctaaattattctccctcacataggataccagaacacacatgct---ggagtcggaatgtttgttcctcacttacgattccggaacactcctgctgtggtctgaatgtttctccctcactcaggattacagaacactgctgttggattcagagtgcttgtccctcaagtacaattgcagagccctgctacttgggtttaagtgcttgtccctcacataggattccagaacactgctatgagggtctgaatgtttgccgcacacataggattccggaacactgctataagggtctgaatgtttgtcccgcacataggactccagaaca---cacctgctgtgttctgaatg--tgtttccctaacctaggattccagaacaatgctacgagggtctgaatgctagtcccacacgttgaattccagagcaccctagctgtgctctgaatgattttctctcacataggattccagaaccctgct-----ggtgggttctga----tggcttctccttcacataggattccagaaaactgctgcgaatgtctgaatgattgtaaatcacaaaggactccataacactaatgctgtcttctgaatattggtacctcagattggattccagaacacagcagctgggttctgagtgtttgtccctcagaaaggattctagaacactcctacgagggtctgaaagtttgtccctcacataggattccagagcactactgctatcaactgaaaatt-tga-------ccctcacataggattccagaacactcctgctgt-----------tgtctgttcctcacttggta---ttccagaacaatcct-gctgcagtctgaacgtttctccatcacataggattccaaaacattgcttctgttgtctgagtgtttgtcccaaaatagaaattccaggacactgctgctgggttgtgactgtttgtccctcacaaagcattccataacactgctgccgtcg---tctgaatgtttgtccctcacatacgattcc--aaaacattcctgctgt------ggtctcaatatctgttcctccctt----aggattccagaacaatgctgtgaggttctcagtgtttgtctcacacttacgatttccagaacgctgctgtgtgggtctaaatgtttgtctctcacataggattccagagcactgctcctgggtattgaatgtttgtccatcacataggattccagaacactcctgttgtggtctgaatgtttgtccctcacataggattccagaacactgccgctgggttgtgagtgtttgttccatgacgtacgattccagaacactgctacgtcggtctaaatgtctgtccctcacataggattccagaacactgcc-------tccttgggactgaatgtttctcccct-cacataggtttctagaaacactcctgctgtggtctgaatgtttgtccctcacataagattcgagagcactgc------tgctttgttctaaaactttgcccctcacataa-----gattctagaa a score=35279.0 s hg17.chr17_random 2352729 647 + 2618010 ctcacataggattccagaacact-----gatgctgggttctgagtgtttctccctcacataggaatccagaaccatcctgctgtt---gtctgaatgtgtgtccctcacttaggtttccagaatactgctgttgggttctgagtgtttgtccctcacgtacgattccagaacactgctacgtgggcctaaatgtttgtccctcacatagggttccagaacac-------------------------------------------------tgctatgagggtctgaatatttgtcccacacttaggtttccagaacaccccagctatggtctgaatgattggccctcacataggattctggtacactgcttctgggttctgagagattctctctcacataggatttcaggtcactgctgctggggtctgaatgtttgtccctcacataggattccagaaaactgcta-----cgaggttctgaattattctccctcacataggattccagaacactcctcctgtggtctgaatgtttgtcccttacttaggattccagaacagtgctgttgggt---tctgagtgtttgtccctcacgtactattccagaacactggtaagtgggtctaaatgtttgtccctcacttaggattccagaacactgctgttgggttctgagtgtttgtccctcacatactattccagaacact s panTro1.chrUn_random 39197779 692 - 240967748 ctcacataggattccagaacacttctaaga-----ggatctgaatgtttgtccctcacataagattccagaac---actgctattgtggtctgaatgtttgttcctcacataggattccggaacactgctgctgggttcttagtgtttttccttcatataggattccagaacacagctacgagggtctgaatatttgtcctgcacataggactccagaacactccttctgtggttctgaatgtattttcctaacagaggattccagaacaatggtacgaggttctgaatgcttgttctacacgtaggattccagaacagcccagctgtggtctgaatgattgtccctcacattggattccagaacactg---ctgggttcgcagtgtttgtctctcacataggattcgagaacagtgcta-tgaggtctgaatgtttttccctctcataggattcaagaacactgc-agcaaccg----tctgaattattctcccacacatgggattccagggcactcttgctgtggtctgaatgtgtgtccctgaattaggattccagaacactcctgct---ttaatctgaatgtttgtccctcacataggattccaaaacactcctgatttgatctgaatgtttgtccctcacatgagattcaagaacactgctgctggggtctggaagtttgtccctcacatttgatttcagaacact a score=56493.0 s hg17.chr17_random 2353386 1138 + 2618010 tctaaatgtttgtccctctcataggattccagaacactactacgagtgtctgaatgtttgttcctcacataggattccagaacactcctgctgtggtctcaatgtttgtccctcacttaggattccagaacactcttgctgtggtctgaatgtttgtccctcactgaggattccagaacactgctgttgggttctga------------------------------------------------gtatttgtccctcacgtagggatccagaacagtgctacatg-ggtctaagtgtttctcccagat---atgggattccagaacactgctacgagagtttaaatg------------------------------------------------tttgtccctcacataggattccag------------------------------------------------aacactgctacgagggactgaatgattgtacctcacataggataccagaacactcctgctctcgtctgaatgtttgtccttctaataggattccagaacactgctgct--------------------------------------act-----------ttctgagtgtttatccctc--acataggatgccagaacactgctgctggggtctgagattttgtctctcac-----ataacattccagaactctgctgctgggttctgagtgtttgtccct--atcatacgattccagaacactgttgcgaggttctgaatgtttgtccctcacataggattccaggacactactgctgtgg---tctgaatggttga--ccctcacataggattccagaacactcctgctgtggtctgggtgtttgtgcctcacatgggattccagaataatcctgctgtggtctgaatatttctccctcacataggattccaaaacattcctgctg-tgg--tctgagtgtttgttcctcacttaggtttcgagaactctcctgctgt------ggtctgaatgtttgtcccttacataggaatccagatcactgcttctgggttctgagtgtttgtccttcacataggattccagaacactgctacgagagtctcaatgtttgtccctcacgtaagattccagaacac------------------------------------------------tgctacgaggatctgaatgtttgtctcacacgtaggattccagaacaccctagctgtggtctgaatgattgccccacacaaagcattctacaacagtgtca----ctgggttctgagtg-ttgtccctcaaatagaatt-cagaacactgctacgagggtctgaatgtttgcccctctaataggattccagaaca s panTro1.chrUn_random 39198529 1381 - 240967748 tctgagtgtttttctctcacataggattccagaacactgctatgagtgtccgaatgtttgtccctcacatgggattcctggacactcctgctgtggtctgaatgtttgtcccacacacaggactccagaacaatgctgctg-ggtgtgaatgtttgtcactcacacaggattccagaacactcctgttgtgttctgaatgtttgttcatcacatagacttccagaacactcctgctgtggtctgggtgtttatctctcacataggattccagaacagtgctgc-tgtggtctgaatgtttgtccc---tcgcataggattccagaacactgctacgaagatttgaatgtttgtctgtcacataggattttagaacactgcagcagggttctgaatatttgtccttcacataggattccagttcactactgctgtggtctgaatgtttgtcctttacataggatttcacaacactgctacgagggtctgaatgtttgtcccttaaataggataccagaaaactcctgctgtgctgtgaatgtttattcctcacataggattccagaacactgctgctttggtctgaaaggttgtccctcacagaggattccaaaaactctggtacgaggttctgaatgtgagtccccctaacataggattccagaacactgctgctgggttctgagtgtttgt-----acctgcaataagattccagaacacttctgctggggtctgaatgtttctccctcaa--ataggattccagaacactgatacgaggttctcaatgtttgtccctcacataggattccagaac---actgctatgaggttcagaatg--tgagtccctctcttaggattccagaacactgctgctgtgatctgaatgtttgtccctctcacaagattccagaacactcctgctgtggtctgaatgtttgtctctcacataggattacagaaca---ctggtgatgggttctgagtcgttgttcctcacgtacgattccagag------tactgttacgtgggtctaaatgcttctccctcacataggattccagaacactgctgcgagggtctgaatatctgtcccgcacataggactccagaacactcatacgagtgtctcaatgtttgtcccgcacataggaccccagaacactcctgctgtgctctgaaagtattttcctaacataggattccagtacattgctacgagggtctgaaggcttgtcccacaagtaggattacagagcatcc-agctgtgttctgaatgattgtccctcacatcggattccagaaca----cagctgctgggttctgagtgtttctccctcatataggattccagaacactgcagtgagggtctgcattattgtccctcacataggattccagaaca a score=34963.0 s hg17.chr17_random 2354551 790 + 2618010 cttatgtaggattccataacactgcttttgggttctgagtgtttttccctcatgtttgattccag--------aacagtgttacatgggtctaaatgtttgtccctcacataggactccagaacac--------tgctacgagggtctgaa--tgttggtccctcacataggattccagaacactgctacaagcgtctaaattattctccctcacataggataccaga-----------------------------actcaca-------------------tgctggagtctgaatgtttgttcctcacttacgattccggaac----------------------------------------------actcctgctgtggtctgaatgtttgtccctcactcaggattacagaacactgctgttggattcagagtgcttgtccctcaagtacaattgcagagcactgctacttgggtttaagtgcttgtccctcacataggactccagaacactgctacgagggtctgaatgttggtc------------------------------------------------cctcacataggattccagaacactgctacaagcgtctaaattattctccctcacataggataccagaacacacatgctggaatctgaatgtttgttcctcacttacgattccggaacactcctgctgtggtctgaatgtttgtccct------------------------------------------------cactcaggattacagaacactgctgttgga----------------ttca--------------------------------gagtgcttgtccctcaagtacaattgcagagcactgctacttgggtttaagtgcttgtccctcacataggactccagaacactgct-acgagggtctgaatgttggtccctcacataggattccagaacactgctacaagcgtctaaattattctccctcacataggataccagaacac s panTro1.chrUn_random 39199937 1023 - 240967748 ctcacttaggattccagaacagtgtttttgggttctgagtgtttgtccctaaagtacgattcctgataactgcaac-------ca-gggtctgaatgtttgtcccgcacataggcctccaaaacactcctgctgtgtta--------tgaatgtgtt--ttcctcacataggattccagaacaatgcaacgag-gtctgaatgattttcccacacataggattccggaagaccccagatatggtctgaaagattgtcagtcacatagggttcccgaacactgctgttgggttctgagagtttgtccctcaaataggattcgggaacactgctaagagtgtctgaatcattctccctcacaggatttgagaaaactcctgctgtgatctgaatgtttgtccctcacttcggattcccgaacactgctgttcggttctgagtgttta-acctcacttacgattccagaacactgctacatgtgtctaaatgtttgttcctcacataggattccagaatattgcaaggagggtccgaatgtttgtcccgccaataggactccacaacactcctgctttgttctgaatgtgttttcctcacatatgatttgaggacactgctacgagggtctgaatgattgtctctctcacaggattccagaagactgctgctgggttctgagtgtttgtccctcatatacgattccagaacactgctacgagggtctgaatgtttgaccctgacataggattccagagcactgttatgagcgtctaagtttttctctcacacataggattccagaacactcctgctggagtctgaacgtttgttcttcacttaggattcaagaacactcctgctctggcctgaatgtttgtccctcacttaggattacagaagattgctgc-tgggttc---tgtttgtccctcacatacaattccagaacactactcacaacggtctgaatgtttgtccctcacataggattccagaacactgttacgagggtctgaattattctccctcacataggattccagaacac a score=25205.0 s hg17.chr17_random 2355358 602 + 2618010 tgtttgttcctcacttacgattccggaacactcctgctgtggtctgaatgtttgtccctcactcaggattacagaaca---ctgctgttggattcagagtgcttgtccctcaagtacaattgcagagcactgctacttgggtttaagtgcttgtccctcacataggattccagaaca---ctgctacaagggtctgaatgtttgtcccgtacataggactccagaacacacctgctgtgttctgaatgtgtttccctaacctaggattccggaacaatgctacgaagttctgaatgctagtcccacacgtagaattccagagcaccctagctgtgc--------tctgaatgattttctctcacataggattccagaaccctgctgct----gggttctgatggcttctccctcacataggattccagaaa-----actgctgcgaatgtctgaatgattgtaaa---tcacaaaggattccgtaacactaatgctctcttctgaatattg-----------gtacctcagattggattccagaac-----------------------------------------------acag--cagctgggttctgagtgtttgtccctcagaaaggattctagaacactcctacgagggtctgaa--agtttgtccctcacataggattccag s panTro1.chrUn_random 39201072 651 - 240967748 tgtttgtgcctcacgtgggattccagaacaatcctgctgtcgtctgagtgtttctccctcacttaggattgcaaaacattcctgctgt--ggtctggagtgcttgttcctcacgtaggattccagaacacggctacgggggtgtgaatgtttgtccctcacataagattccagcacactcctgctac---ggtcagaatgtttgtccctcacataagattccagaacactggtgctgggttctgagtctttgtccctcacataggattccagaacaatgttacgagggtctgaaggtttgtccctcacataggatttgagaacac--------tgctgatgggttctgagtgtttgtccctcacataagatttcaaaac---actgctaagaggg-tctgaatgtttgtccctc-catagaattccag--atcactactgctgtg---gtgtgaatggttg---accctcacataggattccagaacact-------ccttctg----ttgtctgcgtgtttgtgcctcacatgggattccagaacaatcctgctgttgtctgaatgattctcccctcatgtaggattccaaaacagtcctgctgtcttctgagtgtttgtccctcaaatagggttcgagaacactgctatgagggtctgaatta--ttctccctcacataggattccag a score=57092.0 s hg17.chr17_random 2355977 1227 + 2618010 ctgaaaatttgaccctcacataggattccagaacactcctgctgttgtctg-------tgcctcacttggtattccagaacaatcctgctgcagtctgaacgtttctccatcacataggattccaaaacattgcttctgttgtctgagtgtttg-tcccaaaatagaattccaggacactgctgctgggttgtg-------------------------------actg-----------------tttgtccctcacaaagcattccataacactgctgccgtc------gtctgaatgtttgtccctcaga------taca------------------------------------------attccaaaacattcctgctgtggtctcaatatctgttcctcccttaggattccagaacaaagct----ctgaggttctcagtgtttgt--ctcacacttatgattccagaacg---ctgctgtgtgggtctaaatgtttgtctctcacataggattccagagcactgctcctg-ggtactgaatgtttgtccatcacataggattcca--------------------------------------------------gaacactcctgt-tgtggtctgaatgtttgtccctcacgtaggattccagaacactgccgctgggttgtgagtg-tttgttcctgacgtacgattccagaa-cactgctacgtcggtctaaatgtctgtccctcacataggattccagaacactgctcctt----gggactgaatgtttctccctcac------------------------------------------------ataggtttctagaacactcctgctgt------------------------------------------------ggtctgaatgtttgtccctcacataagattctagaacactgctgctttgttctaa--aactttgcccctcacataagattctagaacactgctgctttgttctaaaactttgcccctcacataggattccagaacacttctaagaggatctgaatgtttgtccctcacataagactccagaacactgctat------------------------------------------------------------------------------------------------tgtggtctgaatgtttgttcctcacataggattccggaacactgctgctgggttcttagtgtttttccttca--ta----------------------------------------------taggattccagaacacagctacgagggtctgaatatttgtcctgcacataggactccagaacactccttctgtgttctgaatgtattttcctaacagaggattccagaacaatggtacgaggttctgaatgcttgttctacacgtaggattccagaacaccccagctttggtctgaatgattgtccctcacattggattccagaaca---ctgctgggttcgcagtgtttgtctctcacataggattcgagaacagtgctacgagggtctgaatgtttttccctctcataggattcaagaacactgc s panTro1.chrUn_random 39201741 1627 - 240967748 ctgaatgtttgtccgtcacatatgattcctgaatactcctgctgtggtctgaaagtttcccctcaaataggattccagaacagtgctgctgggttctgagtgtttttccctcacatatgattccagaacactgctacgagtgtcctaatgtttgttcctcacataggattacagaacactgctgctgtgttctgtgtatttttcactcacataggattccagaacactgctacgagggtctgaatatttgttcctcacataatattccagaacactgc------caagagagtctgaatgtttatccctcagataagattacagaacaatgctacgaggctcagaatgtttgctcttcacatcggattccagaacactactgcagtggtctgaatggttgatgctcacataggattccagaaca---ctccagctgtgg-tctgggtgtttgtgcctcaca--tgggattccataacaatcctgctgt---ggtctgaatgcttctctgtcacataggattacaaagcattcttgctgtggt-ctgagtgtttgtccctcacataggactccagtaacattcctgctgtcatgggaatgtttctccctcacttatgtttccaggaacactcctgcgtgtggtctgaatgtttatccctcacttaggattccagaacactgctgttgggttctgagtgttttgtgcctcacatacgattctagaatcacttctacgttggtctaaatgctcgtccctcacatagggctccagaaaactac----tatgagggtctgaatgtttgtccctcacctaagactccataacactgctaagagagtctgaatgtttgtcccgcatgtagaattccagaacactcctgctgtgttctgaatgtattttcctcacttaggattccagaacaatgctacgagggtctgaatggttgtcccacacttaggattccagaacaccccagctgtggtctgaataa--ttgtccctcacataggattccagaacactgctgctgggttctgagtatttgtccctcacataggattccagaacactgttaagatggtctgaatgtttgtccctcaaataggattccagaacactgctatgagggtataaattattctccctcacgtaggattccagaacactcctgctgttgtctgaatatttgttccccactaagtattcaagagcactcctgctgcggtctgagtgtttgtccctcacttaggattccagaacactactgttgggttctgagtgtttgtccctcaggtacaattccacaacactgccacgtgggtctatatgtttgtctgttacgtaggattccagaacagtgctacgatggtctgaatgtttttctcgcacataggactccagaacactcttgctgtgttctgaatgtattttcctatgataggattccagaagaatgttatgagtgtctgaatgcttgtcgcacatgtaggattccagaaaaccccagctgtggtctgaatgattgtccctcacataggattccagaacactgctgctgggttttcagagtttgtccctaccatagcattccagaacactgcgacgagggtctaaatatttgtcattcacataggattccagaacactgc a score=201870.0 s hg17.chr17_random 2357211 4117 + 2618010 gtctgaattattctcccacacatgggattccagggcactcttgctgtggtctgaactgtgtgtccct--------------gaat----------------------------------taggattccagaacactcctgctttaatctgaatgtttgtccctcacataggattccaaaacactcct------gatttgatctgaatgtttgtccctcacataagattcaagaacactgctgctggggtctggaagtttgtccctcac------------------------------------------------atatgatttcagaacacttctacgggtt----tctcaatctttgtccctcacataggattccagaaatctgcttctggcttctgagtg------------------------------------------------tttttctctcacataggattccagaacactgctatgagggtctgaatgtttgtccctcacataggattcctggacactcctgctgtggtctgaatgtttgtcccacacacagaactccagaacaatgctgct-gggtgtgaatgtttgtcactcacac--aggattccagaacacccctgctgtgttctgaatgtttgttcatcacatagacttccagaacactcctgctgtggtctgggtgtttatctctcacataggattccagaacagtgctgct-----gtggtctgaatgtttgtccctcgcataggattccagaacactgctacgaagatt------tgaatgtttgtctttcacataggattttagaacactgca------gcagggttctgaatatttgtccttcacataggattccagatcactactgctgtggtctgaatgtttgtcctttacataggatttcacaacactgctacgagggtctgaatgtttgtcccttaaataggataccagaaaactcctgctgtgctgtgaatgtttattcctcacataggattccagaacactgctgctttgg--tctgaaaggttgtcc------------------------------------------------ctcacagaggattccaaaactctggtac-gaggttctgaatgtgagtt---cctaacataggattccagaacactgctgctgggttctgagtgtttgtacctgca-ataagattccagaacacttctgctggggtctgaatgtttctccctcatgtaggattccaaaacagtcctgctgtcttctgagtgtttgtccctcaaatggggttcgagaacactgctatgagggtctgaattattctccctcacataggattccagaacacggctatgagggtctgaatgtttgtccctcacatatgattcctgaatactcctgctgt------ggtctgaaagtt--tccctcaaataggattccagaacagtgctgctgggttctgagtgtttttgcctcacata------tgattccagaaca---ctgctacgagtgtcct-aatgtttgttcctcacataggattacagaacactgctgctgggttctgtgtatttctcactcaca--taggattccagaacactgctacgag----ggtctgaatatttgttcctcacataatattccagaacactgccaagagagtctg-------aatgtttatccctcagataagattacagaacaatgctacga------ggctcagaatgtttgctcttcacatcggattccagaacactactgcagtggtctgaatggttgatgctcacataggattccagaacactcctgctgtggtctgggtgtttgtgcctcacatgggattccataacaatcctgctgtggtgtgaatgcttctctgtcacataggattacaaagcattcttgctgtggtctgagtgtttgtccctcacatagggctccagaacattcctgctgtcgtgg----gaatgtttctccctcacttatgtttccagaac------------------------------------------------actcctgctgtggtctgaatgtttatccctcacttaggattccagaacactgctgttgggttctgagtgttttgtgcctcacatacgattctagaacac-------------------------------------ttctacat-----------tggtctaaatgctcgtccctcacatagggctccagaaaactactatgagg-----gtctgaatatttgtccctcacctaagactccataaca---ctgc---taagagagtctgaatgtttgtcccgcatgtagaattccagaacactcctgctgtgttctgaatgtattttcc-tcacttaggattccagaacaatgctacgag----ggtctgaatggttg----tcccacacttaggattccagaacaccccagctgtggtctgaataattgtccctcacataggattccagaacactgctgctgggttctgagtgtttgtccctcacataggattccagaaca------ctgttacgatggtctgaatgtttgtccctcaaataggattccagaaca---ctgc--tatgagggtataaattattctccctcacataggattccagaacactcctgctgttgtctgaatatttgttcccca------------------------------ctaagtat------------------tcaagagcact------------------------------------------------cctgctgcagtctgagtgtttgtccctcacttaggattccagaacactactgttgggttctgagtgtttgtccctcaggtacaattccacaacactgccacgtgggtctatatgtttgtctgttacgtaggattccagaacagtgctacgagggtctgaatgtttttctcgcacataggactccagaacactcttgctgtgttctgaatgtattttcctatgataggattccagaagaatgttatgagtgtctgaatgcttgtcgcacatgtaggattccagaaaaccccagctgtggtctgaatgattgtccctcacataggattccagaacactgctgctgggttttcagagtttgtccctaccatagcattccagaacactgcgacgagggtctaaatatttgtcattcacatagaattccagaacactgctactgggttctgagtgtttgtccctcacaaaggattcctgaacaatgctgctgtggtctgaatgtttgtctctcatataggattccagaacactactgctgtggtctcaacgtttgaccctcagatatgattccagaatactcctgctgtgatcagggtgtttgtgtctcacatgggattccagaacaatccttctgtggtctgaatgtttctccctcacataggattccaaaacattcctgctgcagtctgagtgtttgtccctcaaacaggattgtagaacactgctactggggtctgaatgtttgtccctcacataggattccaaaac---cctgacaggagggtctgaattattctccctctgataggattccagggcactcctgttgtggtctgaatg---tttgtccctcacttaggattccagaacactgctgttaggttctgagtgtttgtccctcatgtgcgattccagaaca------atgttacgtgggtctaaatatttgtccctcacataggattccagaacactgctaggagggtctgaatgtttctctcgcacgtaggactccagaacactcctcctgtttcctgaatgtatt-ttcctcacatgggattccagaacaatgctaccagggtctgaatgtt--tttcccacacttaggattccagaacacctcagctgtgttctgaatgattgtccctcccataggattccagaacactgctgctgggttctgagtgtttctccctcacatacgattccagaacactgctacgagggtctgaatgattgtagttcacataggattccagaacactcctgctctgt--tctgaatgtttgtcactcagataggattccagaaaaaaggtgctg--ggttctgaatgtttgtccctcacataggatttcagaacactcttgctgtggtctgaatgtttgtccctcacataggattgcagaacactactgctgtggtctgaatggttgaccctcacataggattc------------------------------------------------cagaacatccctgctctggtctgggtgtttccccc-------ttaaataggattccagaacactgctgctgggttctgagagtttgtccaacacacaggatcccagaactctcttgctgtgt---tctgaatatttgtcactcatataggattccagaaccct-----gatgctgtggtctgaatggttgaccctcacataggattccagaacaatcctgctgtggtctgtgtgtttttaccgcacatggtattccagaacaatcctgctgta---gtctgaatgtttctccctcgcataggcttccaaaacattcctcc---tgt-gtctgagtgtttgtccctcaaataggattccagaacact s panTro1.chrUn_random 39203423 4547 - 240967748 gtctgaatgtttgtctctcatataggattccagaacactactgctgtggtctcaacggt-tgaccctcagatatgattccagaatactcctgctgtgatcagggtgtttgtgtctcacatgggattccagaacaatccttctgtggtctgaatgtttctccctcacataggattccaaaacattcctactgcag------tctgagtgtttgtccctcaaacaggattgtagaacactgctactggggtctgaatgtttgtccctcacataggattccaaaaccctgacaggagggtctgaattattctccctcctataggattccagagcactcct----gttgtggtctgaatgtttgtccctcacttaggattccagaacactgctgttagtttctgagtgtttgtccctcatgtgcgattccagaacaatgttacgtgggtctaaatatttgtccctcacataggattccagaacactgctaggagggtctgaatgtttctctcgcacataggactccagaacactcttcctgtttcctgaatgtattttcctcacatgggattccagaacaatgctaccagggtctgaatgttttt--cccacacttaggattccagaaccccccagctgtgttctgaatgattgtccctcccataggattccagaacactgctgctgggttctgagtgtttctccctcacatacgattccagaaca---ctgctacgaggt--tctgaatggttgtagttcacataggattccagaacactcctgc------tctgttctgaatgtttgtcactcagataggattccagaa------aaaaggtgctgggttctgaatatttgtccctcacataagatttcagaacactcttgctgtggtctgaatgtttgtccctcacataggattgcagaacactactgctgtggtctgaatggttgaccgtcacataggattccagaacacccctgctctggtctgggtgtttcccccttaaatagaattccagaacactgctgc--tgggttctgagagtttgtccaacacacaggatcccagaactctcttgctgtgttctgaatatttgtcactcatataggattccagaaccctgatgctgtgg-tctgaatg---gttgaccctcacataggattccagaacaatcctgctgtggtct--gtgtttttacct-cacatggtattccagaacaatcctgctgtagtctgaatgtttctccctcgcataggcttccaaaacattcctgctgt-gtctgagtgtttgtccctcaaataggattccagaacactggtattggcatcttaatgtttgtccctcacttaggattccagaacactgctgttgggttctgagtgtttg-ccctcacgtacgattccggaaca------ctgttacgtgggtcttaatgttagccctccacagaggattccagaacacggctaccagggtctgaatg--tttgcctcacacataggactga----agaacaatcctgct----gtgttctgaatgtattttcctcacataggattccagaacaatgctacgagggtctgaatgtttgt--cccacaagtaggattccagaacac----accagctgtgggctgaatgattgtccctcacatgggattccagaacaatgcta-------ctgggttctaaatgtttgtccctcaggtaggattcctgaac------acgactgctggggtctgaatatttgtccctcatctaggattccagaagactactgctgtggtctgaatgtttgaccctcacataggattccagaacatgcctgctgtggtctgggtgtttgtgcctcacatgggattccagaacagtcctgctgtggtctgaatgtttctccctcacatatgattccaaaacatttctgctgttgtctgagtgtttgtccctcaaataggattctagaacactgctactg----gggtatgaatatttgtccctctcataggattccagaacactgctacgagggtctgaattattctaccccacataggattccaggatactcctgctgtgctcagaatgtttgtccctcacttaggattcctgaacactgctgttgggttctcagtgtttggc-cctcacatacgattccagaacaccacagctgtggtctgactgtttgttcctcagatgggattccagatcactcctgctgttgtctgaatgtttttccctcttataggattgcagaacactact-----gctgttgtctgaatggttgaccgtcacataggattccagaacacccctgctctt------gtctgggtgtttgtccccaaaataggattccagaacactgctgctgcgttctgagtgtctgtcccttcacataggattccagaacagtgct----gatatggtttgaatgtttgttcctccca----tagaattctagaacaatcctgctgtaatctgaatgtttgtctctcatacaggattccagactactactgctgtggtctgaatgtctgaccatcacataggattccagaacaatcctgctg------tggtctgggtgtttgtgcctcacatgggattgcagaacaatcctgcagta-----gtctgaatgtttctccctcacattggattccaaaacattcctgctatcgtctgagtgtttgtccctcaaatacgattccagaacactggtattgaggtctgaatatttgtccatcacataggaatccagaacactatcacgagggtttgaattattctccctcacataggataccagcgcactcctgctgtggtctgaatgtttgtccctca-ttaggattccagaacactgctgttgggttctgagtgtttgtccctcacgaacaattccagaacactcccatgtgggtctaaatgtttttccctcacataggattccagaataccgctaagagggtctgaatgtttgtcccgcacataggaccccagaacactcctgatgtgttctcaatgtattttcctcacataggattccagaacaatgctacaagggtctgaatgcttgtcccacacgtaggattccagaacaccccagctgtggtctgaatgattgtaccttacataggactcctgaacactgctgctgggttctgagtgtttctccatcacataggattacagaacactgctgctgggttctgagtggttctccatcacataggattccagaacactgctacaagggtctgaaccattgtatctcacataggattccagaacactcctgctgtggtcttaatgtttgttcctcaaataggattacagaacactactgctgtggtctgaaaggttgaccgtcatataggattccagaacactactgctgtggtctggctgtttgtgcctcacgttggattctagaacaatccttctgtgttctgaatgtttcttcctcatataggcttccaaaatattcctgctgtggtctgagtgtttgtccctcaaataggattccaaaacactgctacttgggtctaaaggattgtccctaacataggattctggaacactcct-aca--agggtctgtatgtttcttccgcacataggactccagaacactcctgctgtattgtgaatgaatttt---cctcaaataggattgcagaacaatgctgcgagggtctaaatgtttgtctcacaggtaggattccagaacaccccagctgt------ggtctgaatgattgtccctcacataggattccataacactgctgctgggttctgagtgtttctcccccacataggaaaccaggacactgctactgggttctgaatg-attgtacctcacattggactccagaacactcctactgtggtatgaatgtttgtctctcagac--aggattacagaacactgttgctgggttctgaatgtttgtcactcacataagattccagaacactgctcctgtgttctgaatgtttgttcctcacataggatttcagaacactcctgctgtggtccgaatggttgaacctcatataggattccagaacactcct--tctgtggtctgggtgtttgtgccttacatgggattccagaacaattctgctgttg--tctgaatgtttctctctcacataggattccaaaacattcctgctgtggactgagtctttgtccctcaaataagattccagagccctggtactggggtctgaatgtttgtccctcacataggattccataacactgttacgaggttctgaattattctcccacacataaggttgcagaacactcctgctgtggtctgaatgtttgtccctatcttatt-------attccagaacactgatgttgggttctgagtgtttgtccctcacgtacgattccagaacac---tactatgtgggtctaaatgtttgtccctcacatagaattccagaacactgttacgaggttg-----tgaatgtttgtcccgcatataagactgcagaacactcctgctgttttctgaatgtcttttcctcacatagcattccagaacaa---tgctacaagggtctgaaagtttgtcccacatgtaggattccagaaca---ccccaggtgtggtctgaatgattgtccctcaaataggattacagaagact a score=43006.0 s hg17.chr17_random 2361338 789 + 2618010 tcttaatgtttgtccctcacttag------------------------------------------------gattccagaacactgctgttgggttctgagtgtttat-cctcacgtacgatgccggaacactgttacgtgggtcttaatgttagccctccacagaggactccagaacacggcta--caagggtatgaatgtttgcctcacacataggactgaagaacaatcctgctgtgttctgaatgtattttcctcacataggattccagaacaatgctacgagggtctgaatgtttgtcccacaaataggattccagaacacaccagctgtgggctgaatgatt--gtccctcacatgggattccagaacaatgctactgggttctaaatgtttgtccctcatgtaggattcctgaacactactgctggggtctgaatatttgtccctcatctaggattccagaagactactgctgtggtctgaatgtttgaccctcacataggattccagaacacgcctgctgtggtctgggtgtttgtgcctcacatgggattccagaa----cagtcctgctgtgg---tctgaatgtttctccctcacata-tgattccaaaacatttctgc--tgttgtctgagtgtttgtccctcaaataggattctagaacactgctactggggtatgaatgtttgttcctctcataggattccagaacactgctacgagggtctgaattattctaccccacataggattccaggacactcctgct-gtggtcagaatgtttg-tccctcacttagtattcc-tgaacactgctgttgggttctcagtgttt--ggccctcacat s panTro1.chrUn_random 39208028 842 - 240967748 tctgaatgattgtccctcacataggattccagaaccctcctgctgtggtctgaatggttataccttacatccgattccagaacactgctgctgggttctgagtgtttgtccctcacataggattccagaacacttctatgagggtctgaatgtttgtccctcacataggattcaagaacac--ccaatctatggtctgaatgattgtctctcacataggattccataacactactgctgggttctgagtgtttctctctcacataggattccagaacattactatgaggttctgaatgattgtacctctcataggattccagaatactcctgctttggtctgaat--ttccgtccctcagatagaatgccagaacactgctgctgggttcttagtgtttgtcccttacgtaggattccagaacactgttacgagggtatgaatgtttgtccctcacatagaattctagaacactactgctgtggtctgaatggttgaccttcacatagcattctagaacactcctgctgttgtctgagggtttgtgcctcacatgggattccagaaatatc-------ctgtggtcatctgaatgtttcttcctaacatagggattccaaaacatccctgtagtgt--tctgagtgtttgtccctcaaataggattccagaacgctgctactgggttctaaatgtttgtccctcacataggattccagagcaatgctatgaccatctgaattattctccctcacataggattccagaacactactgctggtggtctgaaagtttgacccctcatatagggttccaagaacact-ct-ttgtgttctccgtgttttgtgcccttacat a score=78191.0 s hg17.chr17_random 2362146 1673 + 2618010 gctgtggtctgaatgtttgttcctcag-atgggattccagatcactcctgctgttgtctgaatgtttttccctcttataggcttgcagaacact---actgctgtt--gtctgaatggttgaccgtcacataggattccaga------------------------------------------------acacccctgctcttgtctgggtgtttgtcc----ctaaaataggattccagaacactgctgctgcgttctgagtgtctgtccct-----------------------------------------------tcacataggattccagaacagtgctgatatg---gtttgaatatttgttcctc----catagaattctagaacaatcctgctgt----------------------------------aa--------------tctgaatgtttgtctctcatacaggattccagactactact--gctgtggtctgaatgtctga---ccatcacataggattccag-aacaatcctgctg-tgg--tctgggtgtttgtgcctcacatgggattgcagaacaatcctgcagtagtctgaatgtttctccctcacattggattccaaaacattcctgctatggtctgagtgtttgtccctcaaatacgattccagaac---actggtattgaggtctgaatatttgtccatcacataggaatccagaacact---------------atcacgagggtttgaattattctccctcacataggataccagcgcactcctgctgtggtctgaatgtttgtccctcat-taggattccagaac---actgctgttgggttctgagtgtttgtccctcacgaaa---gattccagaacactccca-tgtgggtctaaatgtttttccctcacataggattccagaataccgctaagagggtctgaatgtttgtcccgcacataggactccagaacactcctg-----------atgt-------------------------------------gttctcaatgtattttcctcacatag---gattccagaacaatgctaccggggtctgaatgtttttcccacatatag---gattccagaacaccccagctgtgg---tctgaatgattgtaccttacataggactcccgaacactgctgctgggttctgagtgttt----ctccatcacataggattccagaacactgctgctggattctgagtggttctccatcacataggattccagaacactgctacaagggtctgaaccattgtatctcacataggattccagaacactcctgctgtggtctgaatgtttgtacctcatctaggattcccgagcactgctgctgtggtctgaatggttgaccatcacataggatggcagaacactcctgctgtggtctgggtgtttgtgcctccaatgggattccagaacaatcctgctgtggtctgaatgtttctccctcacatagggttccaaagcatccctgctgtgctctgagtgtttgtccctcaaataggattccagaacactgctactgtggtctgaatgtttgttcctcacataggattgcagaacactgctacgaggctctgaattattctcccttacataggattccagaacactcctgctgtggtctgaatgtttgtccctcacttagaattccgcaacgctgatgttgggttctg-agggtttgtccctcacgtacgactccagaacactgctacgtgggtctaaaggtttctccctcacataggattccagaacactgctacaagcctctgaatggttgtcccgcacataggactccagaagattcctgatgtgttctgaatgtgttttcctcacatgcgattccagatc s panTro1.chrUn_random 39208889 1861 - 240967748 gctgtggtctgaatgtttcccccttaacatgggattctaaaatattcctgctgtggtctgagggtttgtccctcaaataggattccagaaaactgcaac-----ttgagtctgaatgtttctccctcacataggattccagatcactgctatgagggtctgcattattctccctcacaaaggattccaggagactcctgttgtggtctgaatgtttgttcctcacta----aggattccagaccactgctgttgggttctcagtgtttgtccctcacgtacgattacagaacactgcttcatgagtctaaaagtttttccctca-ataggattccagaaca---ctgctatgagtgtctgaatgtttg---ctccgaacataggaatccagaacactcctgctgttttctccatgtgttttcctcacagtggattggagaacaatgctacgagggtctgaatgtttttcccacacgtaggattccaga--acaacccagctgtggtctgaa----tgatagccctcacacaggattccagaaaca---ctgttgctggcttctgtgtgtttgtctctcacataggattccagaacactgctgctgtagtctgagtgcttataccttacataggattccagaacacgcctgatgtggtctgaaagtttgt-cctcatataggattccagaactctactg---ttgtgttctgaatgtttggccctcacataggattctagaaaactcctgcgctggtatccat-------gtttg--------tgcctcacatgggattccggaacaatcctgcagtggcctgaatatttctccctcacataggattccaaaactttcctgccgttg---tctgagtgtttgtccctc---aaataggattccagaatactgctactg-gggtctcaatgtttctccctcacataggattccagaacactgctacgaaggtctgaatttttctccctcacatgggattccagaacactcctgccacgctctgaatgtttgtccccccctaaggaatccagaacactgctgttgggttctcagtgtttgtccctc---tagtacgattccagaacactgctgttgggttctcagtgtttgtccc---tctagtacgattccagaacact---gctacgaggctctgaatgattgtaactcacataggattccaagacactcttgctctgttctgaatgtttgccgc----tcaaataggattccagaacaccgctgctggcttctgagtgtttgtccctcatgtatgattccagaacactgctgctgtggtctgaatgcttgttcctcacataatattccagtacactactgctgtggtatgaatgattg----tcatataggattccagaacactactattgtagtctcaatggttgaccctcacatgggattccagaaaactgctgctgtagtctcagtggttttacctcacatgggattccagagcaatcctcttgtggtctgagtgtttctcactcacaaaggattccaaaacaatcctgccatggtctgagtgttcgtccctcaagtaagattccacaacactgctattgggctctgaatgtttgtccctcacataggattccagaacactgctactagagtttgaattattctccctcacataggaatccgcaacactcctgctgtggtctgaatgtttgtccctcacttaggattccagaacactgctgctgagtt-tgcagtgtttgtccctcacatcggattccagaacactgctaggagagtttgaatgtttgtccctcacataggattcaagaacactgctacgagggtgtgaatgtttgtctctcagataggattccagaacactcccgctgtggtctgaaagtttgtccctcacataggattccagaac a score=14515.0 s hg17.chr17_random 2363831 282 + 2618010 gtctgaatgtttgttccacacgtaggattacagaacaccccagctgtggtctgaatgattgtccctcacataggattccagaacactgctgctggtttttgagtgtttctccctcacgtaggattccagtacactgctacgagtgtctcaatgattgtact----------------tcacagaggattaaagaacactcctgctctggtctgaatgtttgtccctcagataggattccagaacactgctgcaaggttctgagtgtttgtccctcacatgagattccagaacactgat s panTro1.chrUn_random 39210762 278 - 240967748 gtctgaatatttgtctctcacataggattccagaacaatcctgctgtggtgtgaatgtttgtacctaaaataggatttcggaacactgctgctggcgtctgaatgtttgtacctcacatgggattccagaaca--------------------atcgtgctgtggtctgaacgttactcacataggattccagaactttccttctgtggtctgaatgtttctccctcacgtcggattccagaacactgctacgagagtctgaatacttttccctcacataggatttcagaacactgct a score=11698.0 s hg17.chr17_random 2364174 256 + 2618010 tgtttgttcctcaaataggattacagaacactactgctgtggtctgaaaagttgaccgtcatataggattccagaacactagtgct-----gtggtctg--gctgtttgtgcctcacgttggattctagaacaatccttctgtgttctgaatgtttcttcctcacataggcttccaaaatattcctgctgtggtctgagtgtttgtccctcaaataggattccaaaacactgctacttgggtctaaaggattgtccctaacat s panTro1.chrUn_random 39211101 252 - 240967748 tgtttgtccttcacatcggattctaaaacactgccacaggagtctgaaagtttgtccctcacataggattcaagaacac---tgctaagaggt--tctgaagc--tttgtccctcacatagaattctggaaaaattttgctgtggtctgaatgtttgttctgcacaaaggattccagaaaacttctgctgtggtctgtatatttgtccctcacataggattccagaacacccctgctgggttct----ggctgtccctcacat a score=28132.0 s hg17.chr17_random 2364456 609 + 2618010 tctgtatgtttcttccgcacataggactccagaacactcctgctgtattgtgaatgaat----tttcctcaaataggattgcagaacaatgctgc-gagggtctaaatgtttgtct-----cacaggtagga---------------ttccagaacaccccagctgtggtctgaatgattgtccctcacataggattccataacactgctgctgggttctgagtgtttctccctcacataggaaaccaggacactgctactgggttctgaatgattgtacctcacattggactccagaacactcctactgtggtatgaatgtttgtctctcagacaggattacagaacactgttgctgggttctgaatgtttgtcactcacataagattccagaacactgct-cttgtgttctgaatgtttgttcctcacataggatttcagaacactcctgctgt---ggtctgaatggttgaacctcatataggattccagaacactccttctgtggtctgggtgtttgtgccttacatgggattccagaacaattctgctgttg---tctgaatgtttctctctcacataggattccaaaacattcctgct----gtggactgagtctttgtccctcaaataagattccaga s panTro1.chrUn_random 39211380 611 - 240967748 tctgtatgtttgtccctcacataggattccagaacactgctgctg----gggactaaatgttattccttcaaaaaggattccagaacacttctgctgggggtctggatgttt-tctccctccaca--taagattgcttaaaaaatgcttctag--------------gctctaaatgtttgttcatcacataggattccagaaccgttctgctggtttctgactgtttctcccacacataggtatccagaacactgctgcaggggtccaaatgtttatccatcacataggattaaagaagactcctgcttgggtctgaatgtttgcccctcatataggattccagaacaatgcttctgccatctgaatgtttgtcactcgcataggattccacaacactgctgctggt-ttctgagtgtttgaccttcacataggattccagaa-----ctgctaccagggtctgaatgtctgcctctcacataggattccagaacattcctcctgtggtatgaatgtttgtccctctcataggattccagaaca---ctgctgctgggttctgagtggttagccctcacaaaggattccagaaca---ctgctaagag-ggactgaatgtttgtccctcaaatagcattccaga a score=6552.0 s hg17.chr17_random 2365079 113 + 2618010 gtctgaatgtttgtccctcacataggattccataacactgctatgaggttctgaattattctcccacacataaggttgcagaacactcctgctgtggtctgaatgtttgtccc s panTro1.chrUn_random 39212053 112 - 240967748 gtctgaatctttgtccctcac-tagtattccagaacactgcttcaagggtctgaatgtttgtccctcacaggggattctagtacactcctgttgtggtctgactgtttgtccc a score=63423.0 s hg17.chr17_random 2365201 1453 + 2618010 attccagaacactgatgttgggttctgagtgtttgtccctcacgtacgattccagaacactactaagtgggtctaaatgtttgtccctcacatagaattccagaacactgttacgagggtgtgaatgtttg--cctcacatagcattccagaaca-------------atgctacaagggtctgaaagtttgtcc--cacatgcaggattccagaacaccacaggtgtggtctgaatgattgtccctcaaataggattacagaagactgccgctgggttctgagggtttctccctcacacaggattccagaataccgctacgagggtctgaat-----------------------------------------------------------------gat-------------------------------tgtccctcacataagattccagaaccctcctgctgtggtctgaatggttataccttacatccgattccagaacactgctgctgggttctgagtgtttgtccctcacataggattccagaacacttctatgagggtctgaatgtttgtccctcacataggattcaagaacacccaat----ctatggtctgaatgattgtccctcacataggattccatatcactactgctgggttctgagtgt-----------------------------------------------ttctctctcacatag------------------------------------------------gattccagaacattactacgaggttctgaatgattgtacctctcataggattccagaatactcctgctttgg----tctgaa--tttccgtccctcagatagaatgccagaacactgctgctgggttcttagtgtttgtcccttacataggattccagaacactgctacgagggtatgaatgtttgtccctcacatagaattctagaac-actactgctgtggtctgaatg---gttgaccttcacatagcattctagaacactcctgctgttg---tctgagcgtttgtgcctcacatgggattccagaaaaatcctgtggtca------------tctgaatgtttctccctaacataggattccaaaaca---tccctgtagtgttctgagtgtttgtccctcaaataggattccagaatgctgctactgggttctaaatgtttgtccctcacataggattccagagcaatgctatgaccatctga-----------------attattc-------------------------------tccctcacataggattccagaacactact----gctgtggtctgaatgtttgaccctcatatagggttccagaacac-----------tct---tgtgttctccgt--------------------------------------gtttgtgccttacattggtttctggaacaatcctgctgtggtctgaatgtttctccctaacatgggattctaaaatattcctgctgtggtctgagggtttgtccctcaaataggattccagaaaactgtaact--tgag-tctgaatgtttctccctcacataggattccagatcactgctacgagggtctgcattattc-tccctcacaaaggattccaggagactcctgctgtggtctgaatgtttgttcctcactaagaattccagaaca-----------------------------------------------------ctgctgttgggttctcagtgtttgtccctcacgtacgattacagaacactgctac s panTro1.chrUn_random 39212174 1790 - 240967748 attctagtacactcctgttgtggtctgactgtttgtcccccacataggattccagaacactgctaggaggaactaaatgcttacccctcacataggtttccggaacactcttaccagggtctgaatgtttgtccctcacaggggattctagaacactcctgttgtggtat-----------------gtttctccctcacat--atgattccagaacactcctgctgttgtctgaatgattttccctcacacaggttcccagaacactcctgttgggttgtgagtgtttgtctctctcctaggattccagaaaactgctacgaggttctgaatatttgcccctcacataggactccaggacactgctgctgtgttgtaaatgtttgtttctcacacaggatttcagaagactcctgctgttgtcttaaattttgtcccacacataggattccaaaacactcccgctgttgtttgaatgtttgtcccttacataggattccaaaacaatgctgctggcgtctgaatgtttgtccctcacgtaggattcaagaacaccgttacgaatgtttgaatgtttgttcctcacataggatttcagaa----caatacagctgtgatctgactgtttgtccctcaaatagggttccagaacactgctgctgggttctgagtgtttgtccctcacatcggattcctgaacaccgtgcgagtgtctgaatgattctccctcacataggattcgagaacagtgctgctgaggtctaaatgtttgtctgacacatatgattccagaacactgctacgagggtctgaaggtttgttcctcacacagaattccagaacactgctgc----gagcatctgaaagttt--gtccctcacactgaattccagaacactgctacaagcatctgaatgattgtccctcatataggattccagaacactgctgctggggtgtgaatgtttgtccctcacataggattccagaacgaatgctgctggagtctatatgtatgtt---cttcacatg--attccagaac---cctgctgctgggttctgagtatttctccctcacatagaattccagaa------------cactgcgacgagggtctgaatgtttgttcataacataggattccagaacactttcgctgt--tgtttt-aatgtttgtccctcacataggattccagaacactgctgctgaggtctgaatgtttgtccctcgcataggattccagaacactgctgagactgtctgaatgtttgtccctcacatattattccagaacattgttacgattgtctaaatgtttgtccctaacatagcattccagaacaatgctccgag----ggtctgaatgtttgtccctcacataggattctggaacactgatacgattgtctgaatgt-ttctccctcacatatgattctggaacactgctacgagggtctcaaaatttgtccctcacataggattccaaaacactactgctgtgttctgagtgtttgtccctaacataggattccagaacaatcctgcagtggtctgaatgtttgtccctcacatagggttccagaacactg---ctgctgggttctgagtgtttgtacctcacataggattccagaacacttctacgagagtctg-aatgttcatccctcacataggattccagaacactgctgctatggtctaaatgtttgtccatcacgtaggattccagaacattggctacgagggtctggaatgtttcttccccacaggggattctgtaacattcctgctgt---ggtctgaatgtttgtccctcagacaggattccagaacactgctac a score=129468.0 s hg17.chr17_random 2366678 2790 + 2618010 ataggatttcggaacactgctgctg-gcgtctgaatgtttgtacctcacatgggattccagaacaatcgtgctgtggtctgaacgtt----actcacataggattccagaacattccttctgt---ggtctgaatgtttctccctcacgtcggattccagaacactgctacgagagtctgaatactt-ttccctcacataggatttcagaacactgctaagagggtctgaatgtttgtccttcacataagatccaagaacactgcct-ctgggttttgatcgtttgtccttcacatcgaattctaaaacactgccacaggagtctgaaagtttgtccctcacataggattcaagaacactgctaagaggttctgaagctttgtccctcacataggattctggaaaaattttgctgtggtctgaatgtttgt-tctgcacaaaggattccagaaaacttctgctgtggtctgtatatttgtccctcacataggattccagaacacccctgctgggttctgg----ctgtccctcacataagacgcaataacccttctgctgt----------gatctgtatgtttgtccctcacataggattccacaacactgctaggagggtctgaatgtttgtccttcacataggattccagaacactgctgctggggactaaatgttattcct----tcaaaaaggattccagaacacttctgctggggtctggatgttttctccctcacataggattgcttaaaaatgcttc--------------------------tagg---------ctct-------------aaatgtttgtc-----catcacagaggattccagaaccgttctgctggtttctgactgtt--tctcccacatataggtatccagaacactgctgcaggggtctgaatgtttatccatca-tataggattaaagaacactcctgcttaggtctgaatgtttgcccctcatataggattccagaacaatgcttctggcatctgaatgtttgtcgctcgcataggattccacaacactgctgctggtttctgagtgtttggccttcacataggattccagaacactgctaccagggtctgaatgtctgtctctcacataggattccagaacattcctcctgtggtatgaatgtttgtccctctcataggattccagaacactgctgctgggttctgagtggttagccctcacaaaggattccagaacactgctaagagggactgaatgtttgtccctcaaatagcattccagaacactcctgatgtggtctaaatatgcgttcctcacataggattccagaagaattctgctctagtctgaatctttgtccctcac-tagtattccagaacactgcttcaagggtctgaatgtttgtccctcacaggggattctag--------tac-actcctgttgtggtctgactgtttgtcccccacataggattccagaacactgctaggag--------------------------------gaa---------------ctaaatgcttacccctcacataggtttccggaacactcttaccagggtctgaatgtttgtccctcacaggggattccagaacactcct------gtt----------------------------------gtgata--------tgagtgtttctccctcacatatgattccagaacactcctgctgtt------gtctgaatgcttttccctcacacaggttcccagaacactcct------gttgggttgtgagtgtttgtccctctcctaagattccagaaaactgctacgaggttctgaatatttgcccctcacataggactccaggacactgctgctgtgttgtaaatgtttgtttctcacataggatttcagaagactcctgctgttgtcttaaagtttgtcccacacataggattccaaaacagtcccgctgtt-----gtt-tgaatgtttgtcccttacataggattccaaaacaatgctgc-----tggcgtctgaatgtttgtccctcacgtaggattcaagaacaccgttacgaatgtctgaatgtt------------------------------------------------tgttcctcacataggatttcagaacaatacagctgtgatctg-actgtttgtccctcaaatagggttccagaacactgctgctgggttctgagtgtttgtccctcacatc-ggattcctgaacaccgctgcgagtgtctg-aatgattgctc-ctcacataggattctagaacagtgctgctgaggtctaaatgtttgtccgacacatatgattccagaacactgctaagagggtctgaaggtttgttcctcacacagaattccagaaca---ctgctacgagcatctgaaagtttgtccctcacacaggattccagaacactgctacgagggtctgaaagtttgtccctcacacagagttccagaacactgctacgagcatctgaaagtt---tgtccctcacacagaattccagaacactgctacaagcatctgaatgattgtccctcatataggattccagaacgctgctgctggggtgtgaatgtttgtccctcacataggattccagaacaatgctgctggagtctatatgtatgtccttcacat--gattccagaaccttgctgctgggttctgagtatttctccctcacatagaattccagaacactgcgacgagggtctgaatg-------------------------tttgttca----------------------------taacataggattccagaacactttcgctgttgttttaaagtttgtccctcacataggattccagaacactgctgctgag-------------------------------------------gtctgaatgtttgtccctcgcataggattccagaacactgct-----gagactgtctgaatgtttgtccctcacatattattccagaacattgctacgattgtctaaatgtttgtccctaacatagcattccagaacaatgctccgagggtctgaatgtttgtccctcacatacgattctggaaca s panTro1.chrUn_random 39213989 2945 - 240967748 acagaattccagaacactgct-ctgagggtctgaatgattgtccctctcatgttattccagtacactactgatggggtctgaatgtttgtccctcacataggattccagaaca---cttctaccagggtctgaatgtttgtccctcacataggattccagaacacttctacgattgtctgaat-cttggtccctcgcataggattccagaacattgttatgagggtctgaatgtttgttcctcacaggggattccaaaacact-cctgctgtgttctgagtgtttgtccctcacataggattccagatcactgcaacgagggtctgaatgaatgtgcctcatataggattccagaacgctgc------------------------------------------------tgctgaggtccgaatgtttctctctg-acatagggtttcagaaaactgctacaagggtctgaatgtttgtccctaatataggattccataacactccggctgtggtctgaatgtctgtccctcacacaagattccagaactctgctgctgtagtatgaatggatc----------tccatcacatagcattccagaacactgctacgagagtctgaatgtttgtgcctcaaataggattccagaacactgctgctggggtccgaatgtt-----tgtgctcacataggattccaaagcactgctacgagattctgaatgtttt-tccatcacataagattccagaaaactgctacgagcgtctggaagtttgtgcctcacataggaccaaagaactctgctgctagaatgcgaatgtttgttgctaacat-aca----attccagaacactcctgct-gtgtctgaatgtttgtctttcaca-aaagat-tccagaacactcctgccggggccttaatttttgtccctcactataggattcaacaacactgctgctggggtctcaaagtttttccctcaggtaggattccagaacactgctgctggggtctaaaagtttgtctgtcacataggatgccagaaaactgctgttagtttctgagtgtttctccctcacatagaattccataacaatgcaatgaggatctgaatgtttgtccataacataggatttcagaacactccagctattgtttcaatgtttgtccctcgcatagga------------------------------------------------ttccagaacactgctaagagggtcggaatgtttgtccctcacataggattccaaaacactcctgctgtgttctgagtgtttgtccttcacataggattccagatcaatcatgcagtggtctgaatgtttgtccctcacataggtttccagaatactgcaacaggggtctgaatgttttcccctcacattgcattccagaaaactgctacgattc---------tctgaatgtttgccccccacataggattccagaaccctgctatgagggtctgatttttttttctcacattggaccccagaactctgttgttggggtctatatgtttgtctgtcaaataggattccagaaccctgatacgagggtctgaatgtttgttcctcacaggggattccagaacactccttctttggtttaaagctttgtccctcacacggaattacagaacagtggtacgagggtctgaatgattgtccctcccataggattcaagaaca------ctgttatgatagtcttaatatttgtccctcacataggattccagaacactgctacgatagtc------tgaatgtttgtccctaacataggattccagaacactgctatgaggatctgaatatttgtctctcacataggattccaaaacactcttgctgtgttccgagggtttgtctctcacataggatgccagaacaccgctacgacagtctgaatgtttgtccctcacattggatttaagaaca------ctgttatgaagttctgaatgtttgtccctcacataggattccagaacactgctacgattatg-----tgaatgtttgcccctcacataggattccagaacactgctatgagggtctgaatatttgtcccccaagttggattccaaaacactcctgctgttttctgagtgtgtgtccctcacatagaattccagaacaatcctgctgtggtctgaaatgtttgtccctaacatagcgttccagaacactgcagctgggttctgagtgtttgtccctcacatcaggattccagaacactgctacgagtgtctgaaatg-tttctctctcacataggattccagaacactgctgctggggtttaaatgattgtccatcacataggattcctgaacactgctacgagtgtctcaatgtttgttcctcacaggggattccacaacacccctgctgtg---gtctgaaagtttgtgcctcacactgaattccagaaaactgcaaggagggtctgaatgtttgtccctcacacagaattccagaacactactacgagggtctga---ttgactgtccctcac------------------------------------------------gtaggattccagaacactgcttctggggtcttaatgtttgtcctccacataggactccagaacactgctgcaggagtctatgtgtatgtctttcacatcggattccagaacactgaggccgggttctgagtgtttctccctcacatagaattccagaacactgcatcgagggtctgaatgtatgtttctttttattttatattatttcgtttattattattataCTTGgaatttatgtttctaacgtaggattccagaacactcccgctgttttttgaatgttttcccctcacataagattccagaacactgctgctggggactgaatatttttcactcacattccagaacagttctacggttgtctgaatgtttctccctcacataggattccagaacactgctacaagg-----gtctgaatgtttgtccctcagataggatttcagaacacttctacgattgtctgattgttggtccctcacatcggattccagaacactgcgacgagggtctgaatatttgttcctcacaggggattccaaaaca a score=61874.0 s hg17.chr17_random 2369486 1379 + 2618010 tgtttctccctcacatatgattctggaacactgctacgagggtctcaa--aatttgtccctcacataggattccaaaacactcctgctgtgttctgagtgtttgtccctaacataggattccagaagaatcctgcagtggtctcaa--tgtttgtccctcacatagggttccagaacactgctgctgggttctgagtgtttgtacctcacataggattccagaacactgc--------------tgctatg-----------------------------------gtctaaatgtttgtccatcacgtaggattccagaacattgctacaagggtctgaatgtttcttcct--cacagggcattccgtaacactcctgctgtggtctgaatgtttgtccctcagacaggattccagaacactactacgaggttcctaatgtatgtccatcacacagaattccagaacactgct-----ctgagggtctgaa--tgattgtccctctcatgttattccagtacac--------------------------------------------------------------------------------------------tactgatg---gggtctgaatgtttgtccctcacataggattccagaac------------------------------------------------actgctacggggctctgaatatttgtcactcacatagaattccagaac---ccttctacgattg-tctgaatgtttgtccctcacataggattccagaacaccgctacgaatgtctgaaggtttgtccctcacttaggattccagaagaataca-------gctgtggtcggaatgtttgtatctcacatagggttccagaacactgttgctgggttctgagtatttgtacttcacataggattccagaacactgctacgagtgtttgaatgactgtccctcacataggattccagaacacttctacgattgtctgaatgttggtctctcacacagggttccagaagactgcagctgggttctgagtgtttgtccctcacttagaattccagaacactgcaatgatggtttgaatatacgttcctaacataggattccagaacactcccgctcttgtttgaatgtttgtccctcacataggattccagaacactgctacggttttctgaatgtttgtccctcacataggattccagaacacttctacgattgtctgaatgttggtccctcgcataggattccagaaca------ttgttatgagggtctgaatgtttgttcctcacaggggattccaaaacactcct-----gctgtgttctgagtgtttgtccctcacataggattccagatcactgcaacgagggtctgaatgaatgtgcctcatataggattctagaacgctgctgctgaggtcc-gaatgttt-------------------------------------------------------------------------------------------------ctctctgacatagggtttcagaaaactgctacaagtgtctgaatgtttgtccctaatataggattccataacactccggctgtggtctgaatgtctgtccctcacacaagattccagaactctgct s panTro1.chrUn_random 39216948 1620 - 240967748 tgtttgtccctcacataggattccagatcactgcaacgagggtctgaatgaa--tgtgactcatatagtattccagaacactgctgctggggtctgaatgtttgtccctcacataggattccagaacactgctgctgcagtct--acttgtgtgtccctcatattggatgccagaacactgctgct-ggttctgagtgtttctgccacacatagaattccagaacactgcaacggcggtctgaatg-tatgatcctaacataggattccagaccactcccgctcttgtttgagtgtttgtctgtcacataggattccagaacactgctgctagggtctgaatgtttgtccgtaacatagg--actccagaacactcccgctgttgtttgaacgtttctccctcatataggattctagaacactgcttctaggttctgaatgtttgtccctcacataggattccagaacactgctacaaatt----gtctgaacctg--tgtccctcatataatattccagaacactttctgtgaggatcgaaatgtttgtcgcaatattattacagaacacccccgctcgtggtctgaatgtttctcccgcacataggatgacagaatactgctgagagggtctgaatgattgtccctcaagtaggattccagatcaatgctgctggggtctaaaggtttgtccgtcacatcggattccaggctactgctacagggttctgaatgtttattcctcacaggggattccagatcactccttctg----tgttctgaaagttttaccctcacataggattctggaacactgccatgattgtctgaaagtttttccctcacacagaattccagaacaatgcaacgaggggct-------gaatgattgtctctcatgtaggatttcagaagactgctgctggggactgaatgtttgtccctcacgcaggattccagaacaatgttacgattatattaatatttgtccataacataggattacagaacactcccgcagttgtttgaa------------------------------------------------tgtttgtccctctcaaaggattccagaacactgctatgagggtctgaatgtttgtccgtaacatatgattcaaggacactcccgctgttgtttgaatgtttgtccctcacataggattccagaacactgctgctgtggtctaaatgttggtccctcacataggattacagaacactgccacgagggtctgaatatttgttcctcacaggggattccagaacactcctgctgt------ggtctgaatgtttgtcaatcacataggattccagaacactcctatgaggc-----tctgaatgtttgtccctcacacagaattgcagaacactgcagccagggtcttaatgattatccctactctaggattccagaacactgctgctggggtctagaatgtttgtccgtcatcacaggattccagaacaatgctgctggggtctacatgtgtgtccatcccataagattccagaacactgcagctggtttctaagtgttcctccctcacataggattccagaacactttgatgagggtctgaatgtttgtccgtaacataggattacagaacactcccgctgttgtgggaatgtttgtccctcacataggaatccagaacactgct a score=67150.0 s hg17.chr17_random 2370912 1412 + 2618010 tacgagggtctgaatgtttgtgcctcaaataggattccagaac--actgctgctg--gggtccgaatgtttgt-gctcacataggattccaaagcactgctatgagattctgaatgtttttccatcacataatattccagaaaact---gctacgagcgtctggaagtttgtgcctcacatagga--ccaaagaactctgctgctagaatgcgaatgtttgttgctaacatacaattccagaacactcctgctg----tgtctgaatgtttgtctt--tcacaaaagattccagaacactcctaccg------gggtcttaatttttgtccctcacataggattcaacaacactgttgctggggtctcaaagtttgtccctcaggtaggattccagaacactgctgctggggtctaaaagtttgtctgtc----acataggatgccagaaaactgctgttagtttctgagtgtttctccgtcacatagaattccataacaatgcaatgaggatctgaatgtttgt--ccataacataggatttcagaacactccagt-tattgttt-caatgtttgtccctcgcataggattccagaacactg---ctaagagggtctgaatgtttgttcctcacataggattccaaaacactcctgct------gtgttctgagtgtttgtccttcacataggattccagatca---------atcatgcagtggtctgaatgggtgtccctcacataggtttccagaacactgcaacaggggtctgaatgtttttccctcacattgcattccagaaaactgctac----gattctctgaatgtttgtctcccacataggattccagaacactgctacgagggtctgattgtttttttctcacattggaccccagaactctgttgctggggtctatatgtttctctgtcaaataggattccagaaccctgatacgagggtctgaatgtttgttcctcacaggggattccagaacactccttctttggtttaaagctttgt--------------------------------------------------------ccctcac-acggaattacagaacagtggtacgagggtctgaatgattgtccttcccataggattccagaacactgctatgatag-------tcttaatatttgtccctcacataggattccagaacactgctac---gatagtctgaatgtttgtccctaacataggattccagaacactgctatgaggatctga-----atatttgtctctcacat-aggattccaaaacactcttgctgtgttctgagggtttgtctctcacatagg-attccagaacaccgctacgacagtctgaatgtttgtccctcacattggatttaagaacac---------tgttatgaagttctgaatgtttgtccctcacataggattccagaacactgctacga--ttatgtgaatgtttgctcctcacataggattccagaacactgctacgagggtctgaatatttgtc s panTro1.chrUn_random 39218618 1475 - 240967748 tatgattgtcttaatatttgtccctcacataggattccagaacaaac-----ctggagggtctgaatgtttgtccctctcataggattccagaacactgctacgagggtctgagtgtttgtccataacatatgattcaagagcactcccgctgt---cgtttgaatgtttgtccctcacataggattcc--agaacactgctgctggggtctgaatgtttgactctcacataggattccagaaca---ctgctacgattgtctgaatgtt--tcttcctcacctagaattccagaccact------gagatgagggtcagaatttttgtccctca-ataggattccagaatgctgctgctagggtctgaatgtttgtccctcacttaggattccagaacactgctgctggggtctaca--ttta--tgtcagaaacataggattccagaacactgctgctggtttctgagtgtttctcactcacaaacaattccagaacactgcgacgagggtttgaatgtttgtccccgtaacataggattcaaaaacactcaagtattttatttgaaatgtttgtccctcacataggattccagaacactgccactga---ggtatgaatgtttgtccctcacgtaggatttcaaaaca---ctgctacgagggtg---tgaatgtttgtccctcacataggattccagaacactgccactga---------ggtatgaatgtttgtccctcacataggatttcaaaacactgctacgagggtgtgaatgtttgtccctcacttaggattccagaacactcctgctgtgga----ctgaatgtttgtccctcagaaaggaagccagaacagtgctaccagggtctgaatatttgtccctcacataggattcaagaaccctgctgctggggcctaaatgtttgtccttcaaataggattccagaacaccaatacgagggtctgaatgtttgttcctcacaggggattccagaacacttctgctgtggtctgaatgtttgtccactccacatgggattcccacatacatcactgctatgagtgtctgaatgtttgtcccctcacaaagaaattccagaacactgctacaagggtctgtatgactgtccatcacataggataccagaacactgc-------ggctggggtctgaatgtttgtccctcacacaggattccagaacactgctgctggg---gtctgaatgtttgtccgtcgcaaaggattccagaacactgct-----gctctggtctacatgtatgtccttcacataaggattccagaacactgctgctgggttctgagtgtttctccctcacataggaattccagaacactgcgacgagggtctgaatgcttgtccgtgacataggattccagaacactcctgaggatgtt---------tgaatatttttcactcatataatattccagaacactgctacgacgttctg-aaata-ttgtccctcacatgagattctataatactgctgctggggtctaaatgtttgtc a score=22494.0 s hg17.chr17_random 2431932 248 + 2618010 gaattctgctgtgaatctgcctagtcctggacttttttttgttggtaattttttaattaccattcaatctcactggttgttattggtctgttcagggtatctaattcttctcgatttaagttaagagggttgtatttttccctgaatttatccatctcttctaggttttctagtttatgtgcataaaggtgttcatagtagccttgaatgatcttttgtatttgtgtggtgtcagttgtaatagctcc s panTro1.chr19 42703235 247 - 82489036 gaattctgctgtgaatctgcctagtcctggacttttttttgttggtaattttttaattaccattcaatctcactggttgttatttgtctgttcagggtatctaattcttctcgatttaagttaagagggttgtatttttccctgaatttatccatctcttctaggttt-ctagtttatgtgcataaaggtgttcatagtagccttgaacgatcttttgtatttgtgtggtgtcagttgtaatagctcc a score=68682.0 s hg17.chr17_random 2432180 665 + 2618010 catttcatttcttagtgaggttatttagattttttctcc-cttttcttggttaatctt----gctaatggaacatc--attcaaagctgaccaaagtatttt-------------------------------------------------------------------------ttttaactcctgtcaatatgaacctgtgggttccagttcatatccccattggtgctcaa-ataacaaacttcaagttggtctctggctacttttgacgtgaatctagtagattttttttaatatatatataataagatattccaggttcatttgtatat-ttccttacccacact-tatattcagccatttctccaaggaacccctgttccttgtagtgaatatggcatttgg-gacgaaagattgaaatgtaaaaatgatgagtattactaaattgattattttctctcaactttttcagtgtccacaactagaaaata-tttgCTTAAAAGATAAAGTACATCAGCGTTTCTACTGATAATTACA------------GGATTTTTACTTAACCTCATATCTTTTTCCTAAATCTCTTTTATTCCTTGCCAAAAAT----------AACAGTTCCTTGATGTAATTACTCATTTTCTTTATTACCTAATGCTTGCACAACAATCTTGGAATAATATTGCCAATACTAATAACAACAGTGTAGTTATTGCAAACAAACTTAACAGGTTTTTGAAAAAAACATTTTGGCCTTGGGATA s panTro1.chr19 42703482 664 - 82489036 catttcatttcttagtgaggttatttagattttttctcctcttttcttggttaatctt----gctaatggGAcatc--attcaaagctgaccaaagtatttt-------------------------------------------------------------------------ttttaactcctgtcaatatgaacctgtgggttccagttcatatccccattggtgctcaa-ataacaaacttcaagttggtctctggctacttttgacgtgaatctagtagattttttt--atatatatataataagatattccaggttcatttgtatat-ttccttacccacact-tatattcagccatttctccaaggaacccctgttccttgtagtgaatatggcatttgg-gacgaaagattgaaatgtaaaaatgatgagtattactaaattgattattttctctcaactttttcagtgtccacaactagaaaata-tttgCTTAAAAGATAAAGTACATCAGCGTTTCTACTGATAATTACA------------GGATTTTTACTTAACCTCATATCTTTTTCCTAAATCTCTTTTATTCCTTGCCAAAAAT----------AACCATTCCTTGATGTAATTACTCATTTTCTTTATTACATAATGCTTGCACAACAATCTTGGAATAATATTGCCAATACTAATAACAACAGTGTAGTTATTGCAAACAAACTTAACAGGTTTTTGAAAAAAACATTTTGGCCTTGGGATA s canFam1.chr23 42702090 692 - 55586079 cattgcaattattattATTATTTTTTCATTTTTTAACCC-tttatttttattatttttttaaaataataaaataataaaCTTAAAaataataaatttatttttattggtgttcaatttaccaacatagagaataacacccagtgctcatcccgtcaagtgccccactcattgcaattattattcttattgat-----------ggt-------------cccattgttgggcagtagagttctcttcaacatgactcctgagtcctttagatatgatcccag-aaacctttgagagctcctttgctctctgatattagatgtgtgatcttacacacttcttgccctgactctggaatcagccatttctccaaggagtcctggcttctttttttgagtatggtatttagcgtctaaaatttgga------------------------------------------agcCTTTTCAGAAGACAGACCTAGGAGAAACTTTGTTTTGAGAGAAAAATGCATCATGAGTTCTTTTGGTACTTCTACTTCAAAGCTATAGGTTTTCACTTCAGTTGATCTTTACTTTC---------TTTTTCCTATGCTAAGAATCCTGTTTCCCAGCAACTCC--AACTGAAGAACTCACTTGCTTTATTTCACAATCCACCCACAAGGCTCTTAGTATGACAATACTAGTACTGCCACCAACTGTATGGTTATTGAAAAC-AGTTTAAGATATATTTTTTAAGTTCTTTTTGTCCTTAAGGTA a score=20835.0 s hg17.chr17_random 2432845 207 + 2618010 GTTAC-TTTCTCTGAAGTTATGCCTGGATATACAGTTAGATTCCATTGT-------------------TGTGGTGGTGGTTTTA-------GTGATTTTGAGAGATTTTA-----------------AAAattta-----atatttttataagtatgtaaaatatttacatgggtgcaaagt----ccaagctacagaaaaagatacattcaaaaataatctagtgtctgtttctatcttctctattctattccctccat s panTro1.chr19 42704146 207 - 82489036 GTTAC-TTTCTCTGAAGTTATGCCTGGATATACAGTTAGATTCCATTGT-------------------TGTGGTGGTGGTTTTA-------GTGATTTTGAGAGATTTTA-----------------AAAattta-----atatttttataagtatgtaaaatatttacatgggtgcaaagt----ccaagctacagaaaaagatacattcaaaaataatctagtgtctgtttctatcttctctattctattccctccat s canFam1.chr13 39018953 247 - 66159989 GTTACATTGCACTAAAA--ATTTTTTAGTAAATGATTATGTTATAAAGTCATCTGAAATATTTTCTCCTGTGGTTATGACACTAACTCAGTATACTATTAAGTCATTTTACTTTACtttttatttataaatattacttatgtatttatataaCTATGCAAAATATTAATGT-ATTCCAAAGTTATATCATGCAATAG--------ATATTC-AGGGTAATTTAACTTCTAACATTAT-TCCCCTCTCCTGTTTCCTCCAT a score=39890.0 s hg17.chr17_random 2433052 466 + 2618010 cctctatGGGTCAATTTTTAAAAAACAAACATGggctgggtgcggtggctcacgcctgtaatctcagcacttttgcgaggctgaggcagg-gaatcatgaggtcaggtgttcaagaccagcctggccaagatggtgaaaccccatgtctattaaaaatacaaaaattaactgggtgtggtggtgggcgcctgtaatcccagttactc-aggaggct-gaggcagagaattgcttgaacacaggaggtggaagttgcagtgagc---caagatcgctccactgcactccagcctgggtgacaacgtgagactccgtctcaaacaacaacaacaacaacaacaacaacaacaaAACCAAATGTGGTTGATTCTTCCATTATTTTTTTCTTTttttttcagctacattaaattacaattgacatataataaataaactgcatgtacttaaaatgcacaatttgatgttttgacaG s panTro1.chr19 42704353 466 - 82489036 cctctatGGGTCAATTTTTAAAAAACAAACATGggctgggtgtggtggatcacgcctgtaatctcagcacttttgcgaggctgaggcaggtgaatcatgaggtcaggtgttcaagaccagcctggccaagatggtgaaaccccatgtctattaaaaatacaaaaattaaccgggcgtggtggtgggcgcctgtaatcccagttactcgaggaggctcgaggcagagaattgcttgaacacaggaggtggaggttgcagtgagctcacaagatcgctccactgcactccagcctgggtgacaaagtgagactccatctcaaacaacaacaacaacaataacaacaa------AACCAAATGTGGTTGATTCTTCCATTATTTTTTTCTTTGtttttcagctacattaaattacaattgacatataataaataaactgcatgtacttaaaatgcacaatttgatgttttgacaG a score=17169.0 s hg17.chr17_random 2433518 101 + 2618010 AAGTCCCTCTTTCCTGTTTTCTCATCTCCTCTCTCTCTATTCTTCTGTCGTTT-----TTTAA---AGTGTAAGCAAATATACTTTCAATATTTATATCCTGGATTTTT s panTro1.chr19 42704819 101 - 82489036 AAGTCCCTCTTTCCTGTTTTCTCATCTCCTCTCTCTCTATTCTTCTGTCGTTT-----CTTAA---AGTGTAAGCAAATATACTTTCAatatttatatcctggattttt s canFam1.chr9 14262940 109 + 53642819 aagtccctttttaGTTTTGTTTTCTCTCCTCTTTCTCTATACTTCCAGTATTTAAAAATTTAATGTAATATAAGCAAATATATTTCCTATACGTATTCCCTTATTTTTT a score=105669.0 s hg17.chr17_random 2433619 591 + 2618010 AAAACATTGTTGCAGAACAattgtacacattttcctcca-ctgctttatcgtctcctaacaatatctactggagattaatttatagtagcctatagagacactccttattccttttgacagctgcatagtactccatcatgggaaggcaccacagtttatacaccagtaccctattgaaggacacctgggttgtatccag-tgttgttgtagtttttagtttttttcccaaatagaactcttatgaatcgtcttgtgcaatatc-tttcatatatttacctgagtatctttgagatattttatggaattgggatagctgagtcaaagaataatgctgctagttattgccaaaccttcacaagacaaatacgagcatgcctattttcacatcatctcacttccagagaatgctatcagattttgaatttttgataatctaacaggtgagaagtatcgtaccatattatttcatttctcttactatgcatgagattgagtatatttatatggtggtaaaatatttgcattttattttCCCATTAGGCTGTTGGTCTGTTTTCTATCTATTTCCAGAAGCCTTTTTTTCTTCTTCTt---------- s panTro1.chr19 42704920 591 - 82489036 aaaacattgttgtagaacaattgtacacatttttctcca-ctgctttatcgtctcctaacaatatctactggagattaatttatagtagcctatagagacactccttattccttttgacagctgcatagtactccatcgtgggaaggcaccacagtttatacgccagtaccctattgaaggacacctgggttgtatccag-tgttgttgtagtttttagtttttttcccaaatagaactgttatgaatcgtcttgtgcaatatc-tttcatatatttacctgagtatgtttgagatattttatggaattgggatagctgagtcaaagaataatgctgctagttattgccaaaccttcacaagacaaatacgagcatgcccattttcacatcatctcacttccagagaatgctatcagattttgaatttttgataatctaacaggtgagaactatcataccatattatttcatttctcttactatgcatgagattgagtatatttatatggtggtaaaatatttgcattttattttCCCATTAGGCTGTTGGTCTGTTTTCTATCTATTTCCAGAAGCCTTTTTTTCTTCTTCTt---------- s canFam1.chr9 14263254 551 + 53642819 GACACATTgt---agaac-actataggcactttattccatctgttttatcatcttttaataatatatcctggtgattacttcatagtggcatatagagatattccttattcctttttatagctgaatagaactccatcatggggatgtaccatagcttattcaccactatcctactgaaggacacctaggttgtgtctagctcttgttgttgtattta----------caaatagcattgccatgaataattttgcataacatcttttcataattttgtctgagtacctt--ggttaatttataaaattgggatagcagagtcaaagaataatgccactaattattgtcaaatcttcataggaaagatatgagcatgactatttccacataatctcactattaaagaatgtagtcaaattatgagtttttcacagtctcataggtgagaagtggtatcctgtataacttcatttctattcctatgtgggagactggacatctttatatgatgaagaaagatgtgcatcttatttttccattagg-------------------------------------ttttcttcttctccagtctaatt a score=24811.0 s hg17.chr17_random 2434210 288 + 2618010 ctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctgggctcaggcaatcctcccaccttagcttcctgagtagctgggaccacagaccacagatgcatgccacctcgccatttttttttttttttt--------gcttttttttgtttttttggtagagatggggttttgccaagttaaccaagttggtctcaaattcctaacctcaaacaatccgcctgccttggcatcccaaagtgctgggattacaggtgtgagccaccgtgtccagtc s panTro1.chr19 42705511 295 - 82489036 ctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcaacctccgcctcctgggctcaagcaatcctcccaccttagcttcctgagtagctgggaccacagaccacagatgcatgccacctagcctttttttttttttttttttttttttgcctttttgtgtttttttggtagagatgggggtttgccaagt-aacgaagttggtctcaaattcctaacctcaaacaatccgcctgccttgggatcccaaagtgctgggattacaggtgtgagccaccgtgtccagtc a score=16822.0 s hg17.chr17_random 2434498 115 + 2618010 TCAGAAGTCTTTTATATACT------ATTAACCCTTTGTCCGTGATATTAATTGCTAGTTCTTTTTTTATTATTTAGTCATTTGTGTTTTTACTTTGTTTATGATGGTTTCTTA-CCATACA s panTro1.chr19 42705806 115 - 82489036 TCAGAAGTCTTTTATATACT------ATTAACCCTTTGTCCGTGATATTAATTGCTAGTCCTTTTTT-ATTATTTAGTCATTTGTGTTTTTACTTTGTTTATGATGGTTTCTTAACCATGCA s canFam1.chr9 14263805 107 + 53642819 ttagaagtgctttatatattaaagTCATTGACTCTT------TGGTATAAATTACAAGGTTTTTTGC--------AGTCATTTGTCTTTTTACTTTGTTTCTGGTGatatttta-aaataca a score=24346.0 s hg17.chr17_random 2434613 271 + 2618010 ttttttttttttaa-ttttactttaagttttgggatacatgtgcagaacatgcaggtctgttacatagttatacatatgccatgatggtttgctgcacctatcaatccgtcatctgggttttaagcccgacatgcatcaggtatttgtcctaatgctctccctccccttgtccctcacccccgacaggctccagtgtgtgatgttcccctccctgtgtccatgtgatctcattgttcaactcccacttaggagtgagaacatacCTTGCATC s panTro1.chr19 42705921 272 - 82489036 TCttttttttttaaattttactttaagttttgggatacatgtgcagaacatgcaggtctgttacatagttatacatatgccatgatggtttgctgcacctatcaatccgtcatctgggttttaagcccgacatgcatcaggtatttgtcctaatgctctccctccccttgtctgtcacccctgacaggctccagtgtgtgatgttcccctccctgtgtccatgtgatctcattgttcaactcccacttaggagtgagaacatATCTTGCATG a score=11959.0 s hg17.chr17_random 2434884 69 + 2618010 tttttaattataaataattgt-ttttaaatatCAGGAGGGATTTAATTGCAAAATGTTCATGCGCAAAAT s panTro1.chr19 42706193 69 - 82489036 tttttaattataaataattgt-ttttaaatatCAGGAGGGATTTAATTGCAAAATGTTCATGCACAAAAC s canFam1.chr9 14263912 66 + 53642819 ttttttattacaaataattatCTTTTTACTATCA----GAATTTAATTGCAAAATGTATTTGTATACAAT a score=191.0 s hg17.chr17_random 2434953 2 + 2618010 GT s panTro1.chr19 42706262 2 - 82489036 GT a score=7221.0 s hg17.chr17_random 2434955 37 + 2618010 TCCTTGAACACTCTAGGAGAGACGCCCTTTCCCTGTT s panTro1.chr19 42706264 37 - 82489036 TCCTTGAACACTCTAGGAGAGACGCCCTTTCCCTATT s canFam1.chr9 14264844 37 + 53642819 TCTTTGAATATTCTAGGAAAGAACCATCTTCCTTATT a score=0.0 s hg17.chr17_random 2434992 3 + 2618010 ACA a score=836.0 s hg17.chr17_random 2434992 3 + 2618010 ACA s panTro1.chr19 42706301 3 - 82489036 ACA s mm5.chr11 22341508 3 - 121648857 ACT s rn3.chr10 22125690 3 - 110733352 ACT a score=137923.0 s hg17.chr17_random 2434995 411 + 2618010 GACTGTgtgacttcaatctatctgggcctcaagtaccttggatgtaaagaatttagaaaaattgtgtctacatagcag-aatccttgtgaagtataaacaagataacaattatagaggactcagaaaattcctgacacatagtaagcactcaaaaaattataactattagtattGTTTCATCTTTCATTGGAAGTGTACAGA-TTAAATACATAATTGTTATTTTGTTCACTAATCAC----------ACCATTCTCT---------------------------------------AAATAGTTGCTAAATTCTTTCCTATACATGTTTCTTATTTGTCTTGTTTAAGCTTCTGTAGGACAGAAATTA-AACTTGATCCTTTGTTTCTTTTCTCCATGTATCAAGC-AAAATATCTCCAACAT-ACATTGT--GAGAAAAAGCAGCTTTCGAGTATGAGAAAATCT s panTro1.chr19 42706304 411 - 82489036 GACTGTgtgacttcaatctatctgggcctcaagtaccttggatgtaaagaatttagaaaaattgtgtctacatagtag-aatccttgtgaagtataaacaagataacaattatagaggactcagaaaattcctgacacatagtaaacactcaaaaaattataactattagtattGTTTCATCTTTCATTGGAAGTGTACAGA-TTAAATACATAATTGTTATTTTGTTCACTAATCAC----------ACCATTCTCT---------------------------------------AAATAGTTGCTAAATTCTTTCCTATACATGTTTCTTATTTGTCTTGTTTAAGCTTCTGTAGGACAGAAATTA-AACTTGATCCTTTGTTTCTTTTCTCCATGTATCAAGC-AAAATATCTCCAACAT-ACATTGT--GAGAAAAAACAGCTTTCGAGTATGAGAAAATCT s mm5.chr11 22341511 397 - 121648857 GGCTATGTCCCTTCAGTCCATTTAGG--------ACCGTAG-TGTAAGGAATTAACAAGAATTGCACCCATTTCACAG-AGTCCTCGAGAAATGTAAATAAGACAACAATTACAGAGGACTCCAAAAATGCCAGGCACACAGTAGGTATTCAACCAATTTTAACTATCAGAATTATCTCACTGCCAACTGGGAATGCACTGACTTAAACACATGATT-TTATTGACTTTATTAAGCATGTGATTTCCAACAACCCTTG---------------------------------------GAAAATCTGACAAGCTCTTTACCATGTACGTATCATGTTC-CCTTAGTTA----TCTGCAAAAGAATGCTTATGACTTTATC---TGTGTCTTATC--------TGAAGCAAAAACTTCTCCAATAT-ACATTAT--TGAGAAAAATAAC-TCAGAATATGAACAAGACA s rn3.chr10 22125693 429 - 110733352 GGCTATGTCCCCTCAGTCCATTTGGG--------ACTTCAG-TGTAAGGAATTAATAAGAATAGCACCCACTTCATAG-AGGCCTTGAGAAGTGTAAATAAGATATGAATTACAGAGGACTCCCAAAATTCCTGGCACACAGTAGGTATTTAACCTATTTTATCTGTCAGAGTTATCTCACTGTCCACTGGGAATGCACTGGTCTAAACACACGGTTGTTATTTTATTGACTAATCCA----------ACATCCCTTCACGGTTGTTATTTTATTGACTAATCCAACATCCCTTGGAAAAAACTTGACAAGCTCTTTACCATGTACATGTCCTGTCC-CCTTAATCA----TCTGCGAATGAAAGTTTATGCCTTTATT---TGAATCTTATC--------TGCAGCAAAAACTTCTCCAATAT-GCATTCTTGGGGGAAAAATAAC-TCAGGATATGAGAAAGACA s canFam1.chr9 14264881 383 + 53642819 GACTACATGATTtcaatctatctaagcctcagttacctcatgtctgaagaattaagaaaaatcctgaccacctcttagaagcccctgtgaagtataaataaggtaacaattacagaagactcagaaaattcctgacacacaacaggcactcaa-aaatagtaattttTAGCATTATCTCATATTTCAT---AAGTGTATACATTTAAATACATAATTGTTATTT---------ATCAC----------ACAATGTTCT---------------------------------------ACATGCTTTCCAAACCCC------TACATATGTGTTCTTTGTCTTATTGAAGTGCCTATAGGACACAAATTAAAGCTTAACTCCTTAGATCTCATT----TATATCAAGC-AAAATACCTCAAACATAACTTTTT--GAGAGACAAAAGC-TCAGAATATAA-------- a score=2281.0 s hg17.chr17_random 2435406 11 + 2618010 ACTTTCAATAA s panTro1.chr19 42706715 11 - 82489036 ACTTTCAATAA s rn3.chr10 22126136 11 - 110733352 ATTTTTATTTA s canFam1.chr9 14265264 11 + 53642819 ATATTCAACAC a score=0.0 s hg17.chr17_random 2435417 12 + 2618010 CACTTCAGTTAA a score=-1692.0 s hg17.chr17_random 2435417 12 + 2618010 CACTTCAG-------------------------TTAA------------- s panTro1.chr19 42706726 12 - 82489036 CACTTCAG-------------------------TTAA------------- s rn3.chr10 22126147 50 - 110733352 TTCTTTGGGAATTTCGTGCATGTAGACAATTTATTAAGATCATTACTTGC a score=268847.0 s hg17.chr17_random 2435429 784 + 2618010 ACACATTC-AGTGGGTATCTTGA-CTTACCAACAAAATAGAACAAAA-ATGTTCCTTATGATCCCCATCTCTGAAGAACATGCCAACAATAATTT-ATAA-------AGGGACCTA-TCATGCCAAT--GTATTTTTACTTGT--AAAGCAATGAATCATTGCATTATATCTGTTTCAAGCTAAATAGAGTCAATAACATGAAA----CAGGAATTTCAGTGGGATCTTTTATATCTCACTGACCAGCCACAAAATTCAAAGGAATCACAGTGTTCCTTATTATACACAAGTTACCTCCTAT-----CAC--CCCCCAAAGATGAATCTTTCATCACATTTTCCTACCAGCATTCTATGTAATTTATTTTTAACCTCTTTGAGAGCAGAGGAGATTTAGTCATCATAAAATCTATTTTCAACTTATTATCCAGGAGTCAAAT----AAATAAAGAATT----------------AATCAAACAATGTCATGTAATGGGTCTACACATCAGAAGACACATCAGATGAAGGAAGGAGAATGAGAGCTGATTCACTT-GGCTTAACCAAATTGGATAGCTCAGAATACAACAGGAAAAGGAAATGTTGCCTTTTCTATTTATAGAAATATTTACCAGATAAGGACAACTATCTAATTTACTAAAAAACAACTGATTCTCTATTAGTAAT-GTGCAAACCACAAG-------ATTATTCACATGG--TCATAGTGGTTCTCAGCAGGGTATAAAAAGCAAAAGAGAGAACAAGGAGAGATCAAACTCAGAACACTCACTCTCCTGGAAACCCACCGAGAACCTCCACCCTCTGACACCATGGTCAA s panTro1.chr19 42706738 801 - 82489036 ACACATTC-AGTGGGTATCTTGA-CTTACCAACAAAATAGAACAAAA-ATGTTACTTATGATCCACATCTCTGAAGAACATGCCAACAATAATTT-ATAA-------AGGGACCTA-TCATGCCAAT--GTATTTTTACTTTT--AAAGCAATGAATCATTGCATTATATCTGTTTCAAGCTAAATAGAGTCAATAACATGAAG----CAGGAATTTCAGTGGGATCTTTTATATCTCACTGACCAGCCACAAAATTCAAAGGAATCACAGTGTTCCTTATTATACACAAGTTACCTCCTAT-----CAC--CCCCCAAAGATGAATCTTTCATCACATTTTCCTACCAGCATTCCATGCAATTTATTTTTAACCCCTTTGAGAGCAGAGGAGATTTAGTCATCATAAAATCTATTTTCAACTTATTATCCAGGAGTCAAAT----AAATAAAGAATTAAC--TTATGAAATCCAATCAAACAATGTCATGTAATGGGTCTACACATCAGAAGACACATCAGATGAAAGAAGCAGAATGAGAGCTGATTCACTT-GGCTTAACCAAATTGGATAGCTCAGAATACAACAGGAAAAGGAAATGTTGCCTTTTCTATTTATAGAAATATTTACCAGATAAGCACAACTATCTAATTTACTAAAAAACAACTGATTCTCTATTAGTAATCGTGCAAACCACAAG-------ATTATTCACATGGCCTCATATTGGTTCTCAGCAGGGTATAAAAAGCAAAAGAGAGAACAAGGAGAGATCAAACTCAGAACACTCACTCTCCTGGAAACCCACCGAGAACCTCCACCCTCTGACACCATGGTCAA s mm5.chr11 22341983 735 - 121648857 ACATATTC-ACTAGGCTTGTTGA-CTTACCAA-AAGGCTGATCAAAATATGCCTTTAACTCTTCCCA-CTCTGATGAACATAAAACTAAAAATTTAATAATTTTT--AAGGACCCA-TCATGCCAAC--ATGCTTTTGCTATTCAAAAGTAATT-ATCACTGCAAGAT---TGTTTTACCTTTGAGAGATTAAATAAGACAAAA----CTG--------CTAGGACCCTCCCTA-----------AACTAGACTATTTGA--GAAATACAGTATTCTTTGTTGATTACAAGCTTCCACCCGCCTTCACAC--TCCCAAAATAACAGTATTTCATCCTGTTTTCCCACTTGTATCTCTAAAGACCCAGTTCTAACCT-GTTGTGGCCA---GAGATACAATCACCATAAAGTCCATTCTGAACATATTTCCCCAGGATAAGAC-CAGAAATAAGCAATGAAC----ACTCAACCCAAAGAGACAA-GTCATGGACTGTGTCT--ACTTTAGGGGATATA--ATATCAAAGTGAGAAAAGGAAAGTTGATTCTCTTGGGCTTTGCCAAATTGGATAGCTTGGAATATAGCAGGAAAAGGAA--GCAGCTTTTTCTATATATAGA--------------TAACACAACTAATTAACTC-----AAACTAACTGATCTTCCATA-------GTATAAACAAGAG-----------------------TCAT-GTGACCCTCAGCAGGGTATAAAAAGCAGGAGACAGCAAAGGAAGAGACTAGACAAGGAACTCTCCCCATCTTGTAAGCCTACCCAGAACCTCCA-CCTCTGACACCATGGTCAG s rn3.chr10 22126197 761 - 110733352 ATGTATTC-GCTGGGTTTGTTGACCTTACCAA-AAGGCTGATCAAAATATGACTTTAACCTACCCTA-CTCTAAATAACATAGCACTAAAAATTT-ATTT---TT--AAGGACCCA-ACATGTGAAC--ATGTGTTTGCTAGTCAAAAGTAATT-ATCACTACAAAAT---TGTTTTGCCTTTGAGAGATTAAATAAGACAAAAATGCTAGAACCCTCCCTAAGCTTGCTCACA----GCAGACCAACT-----GTTTGA--GAAATGCAGTACTTTTTGTTAATTGCAAACTACCACCTTG----GCAC--TCCCAAAATACCAATATTTCACCCTGTTTTCCCACCAGTATCCCATAAGTCCTGATTCTAACCT-GTTGCTGCCA---GAAATATAGTCACCATGAAGTCCATTCTGAACACATTTCCCCAGGGTAAGTC-CAGAAATAAAGAATTAAC----ACTCAAACCAAGGAGACAAAGTCGTGAACTGTGCCT--ACCTTAGGGGATATA--ATATCAAAGTGAGAAAAGGAAAGTTGATTCTCTTGGGCTTTGCCAAATTGGATAGCTTAGAATAGAGCAGGAAAAGGAA--GCAGTCTTTTCTATATAAAGA--------------TAACAATACTAATTAACAC-----ATGCTAATTGATCTTCTGTA-------GTATAAACAAGAGT------CACCACCCACGTGGTTGGTTAGTAGTCCTTAGCAGGGTATAAAAAGCAAGAGACAGTAAGGAAAGAGACCAGACTAAGAACTCTCTCCATCTTGTAAGCCCACCCAGAACCTCCA-CCTCTAACAACATGGTCAG s canFam1.chr9 14265275 806 + 53642819 ACATATTCAATTGGGTATATTCA-TCTACCAA-AATAAGAGAAAAAA-CACTCCTTTATGATACCCT-CTCTGAAGAACATGTTCataataatttaataatttttaaaaGAACCTATTCATGCCAATGAGTTTTTTTACTGTGTAAAAGTAGTGAATCATTACATTATA--ACTTTCAAATCGAATAGATTCAATAAGACAAAAGAGATAGGTACTTTGCTAGGATTTTTTATACCTCACTGACCA-TCATAAAATCCAAAGGAATCACAGTATTCCCCACTGAACATAAGTGATTGCCCGC-----CCCCGCCCCCCAAGATGGCTCTTTCACCCTATTTTCCTACCAGCCTTTCATATGACTTG---TTAACCTCTTGGCTAG-----AAGATTTAGTTGACATAAAATCCATTCTCAACATATTATCCTGGAGTTAAATACATAAATGAGGATTTAACACTTGTAAAATCCAAAGAAATAATGTCATAGGA-GAGTGT--ACTTTGGAAGACACATCAGACAAGGAAAAAAATATGGAAGCTGATTCACTTGGTTTTAACCAAATCAGATAGCTCACAATACAACAGGAGAAGGAAATGGAGCCTTTTCTATATATAGGTATATTTACCAGATAAACATAATTATCTAATTTACTA-AAACTACATGATTTTCTATTA------GGATAAACAACAAGAAGAGTTGTCCTGCCCATGG--TCCTAGTGGCCCTCAGCAGGGTAT-AAAAGTGACAGATGGCA---GGGGAGATCACACTTGAGAACTTCATTCTTCTGGAAACCCACCCAGAGCCCCCACCCTCTGACACCATGGTCAA a score=39246.0 s hg17.chr17_random 2436213 62 + 2618010 CTCCTG-TTGTGGCTCTGTGTGCTCTGACCA--GGGCTGTGGCCTGGAGAACTGCTGCC-------GCCCCA s panTro1.chr19 42707539 62 - 82489036 CTCCTG-TTGTGGCTCTGTGTGCTCTGACCA--GGGCTGTGGCCTGGAGAACTGCTGCC-------GCCCCA s mm5.chr11 22342718 56 - 121648857 CTC----TTGTGGCTCTGTCTGCTCTGAAGA--GGGCTGTGGCC---AAGGCTGCTGCC-------AGCCCA s rn3.chr10 22126958 59 - 110733352 CTCCTG-TTGTGGCTCTGTCTGCTCTGAGGA--GGGCTGTGGCC---AAGGCTGCTGCC-------AGCCCA s canFam1.chr9 14266081 62 + 53642819 CTCCTG-TTGTGGATCGGTCTGCTCTGACCA--GGGCTGTGGCCAGGAGACCTGCTGCC-------GCCCCT s danRer1.chrUn 146352868 72 - 367113659 CTCCTGATTCTGCCTGTTTGAGTCCCGACTGCTGTACTGAGGACTCTCCTGCTGCTGCCTGTTTGAGTCCCG a score=78579.0 s hg17.chr17_random 2436275 188 + 2618010 GCTGCTGCCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAG-CTGCTGCAGG--------CCCCAGTGCTGCCAGTCTGTGTGCTGTCAGCCCACCTGCTGCCGCCCCAGCTGCTGTCAG-------ACCACCTGCTGT----AGGAC-CACCTGCTGCC----------GCCCCAGCTGCTGTG--------TGTCCAGCTGCTGC s panTro1.chr19 42707601 188 - 82489036 GCTGCTGCCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAG-CTGCTGCAGG--------CCCCAGTGCTGCCAGTCTGTGTGCTGTCAGCCCACCTGCTGCCGCCCCAGCTGCTGTCAG-------ACCACCTGCTGT----AGGAC-CACCTGCTGCC----------GCCCCAGCTGCTGTG--------TGTCCAGCTGCTGC s mm5.chr11 22342774 113 - 121648857 GCTGCTGCCAAACCACCTGCTGTAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAG-CTGCTGCAGG-----------------------------------------------------CCCAGCTGCTGTGTG-------TCCAGCTGCTGC----AG-------------------------------------------------GCCCAGTTGCTGC s rn3.chr10 22127017 158 - 110733352 GCTGCTGTCAGACTACCTGCTGTAGGACCACCTGCTGCCGCCCCAGCTGTTGTGTGTCCAG-CTGCTGCAGG---------CCCAGC--------------TGCTGTGTGTCCAGCTGCTGCAGGCCCAGCTGCTGTGTG-------TCCAGCTGCTGC----AGG--------------------------CCCAGCTGCTGTG--------TGTCCAGCTGTTGC s canFam1.chr9 14266143 113 + 53642819 CCTGCTGCCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAG-ctgctgccgc---------------------------------------------------------------------------ccctcctgctcc----gg--------------------------ttccagctgctgtg--------gctccagctgctgc s fr1.chrUn 303307444 131 + 349519338 GCTGCTGCTGTAGCTACTGCTGTAG------CTGCTGCTACTACTGCTGCTGCTGCTGTAG-CTGCTACTGC--------------------------------------------TGCTGCTGCTGTAGCTGCTG----------------CTGCTGC----AG-------CTGCTGCT----------GCTGCTACTGCTGTA--------GCTGCTGCTGCTGC s danRer1.chrUn 146352940 211 - 367113659 ACTGCTG----------TACTGAAGACTCTCCTGCTGCTGC--CAGTT----TGAGTCCAGACTGCTGTACTGAGGACTCTCCTGCTGCTGCCAGCTTGAGTCCCGACAACTGTACTGAGGACTCTCCTGCTGCTGCCAGCTTGAGTCCCGACTGCTGTACTGAGGACTCTCCTGCTGCTGCCTGTTTGAGTCCCGACTGCAGTATTGAGGACTATCCTGCTGCTGC a score=2726.0 s hg17.chr17_random 2436463 5 + 2618010 AGACC s panTro1.chr19 42707789 5 - 82489036 AGACC s mm5.chr11 22342887 5 - 121648857 AGGCC s rn3.chr10 22127175 5 - 110733352 AGACC s canFam1.chr9 14266256 5 + 53642819 aggcc s fr1.chrUn 303307575 5 + 349519338 TGTAG s danRer1.chrUn 146354254 5 - 367113659 GGACT a score=55052.0 s hg17.chr17_random 2436468 54 + 2618010 ---CCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGCTGCTG s panTro1.chr19 42707794 54 - 82489036 ---CCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGCTGCTG s mm5.chr11 22342892 54 - 121648857 ---CCAGTGCTGCCAGTCTGTGTGCTGCCAGCCGACCTGCTGCCGCCCCAGCTGCTG s rn3.chr10 22127180 54 - 110733352 ---CCAGTGTTGTCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGCTGTTG s canFam1.chr9 14246481 54 + 53642819 ---ctcctgctgcCAGACCACCTGCTGCAGGACCACctgctgccgccccagctgctg s fr1.chrUn 303307580 54 + 349519338 ---CTGCTGCTGCTGCTGCTGTAGCTGCTACTACTGCTGCTGCTGCTGTAGCTGCTG s danRer1.chrUn 146354259 57 - 367113659 CTCCTGCTGCTGACAGTCTGAGTCCCGACTGCTGTACTGAGGACTCTCCTGCTGCTG a score=-31.0 s hg17.chr17_random 2436522 1 + 2618010 T s danRer1.chrUn 146354316 1 - 367113659 C a score=-31.0 s hg17.chr17_random 2436522 1 + 2618010 T s fr1.chrUn 303307736 1 + 349519338 C a score=422.0 s hg17.chr17_random 2436522 1 + 2618010 T s panTro1.chr19 42707848 1 - 82489036 T s mm5.chr11 22342946 1 - 121648857 C s rn3.chr10 22127234 1 - 110733352 T s canFam1.chr9 14246535 1 + 53642819 t a score=4114.0 s hg17.chr17_random 2436523 14 + 2618010 -------CAGACCACCTGCTG s panTro1.chr19 42707849 14 - 82489036 -------CAGACCACCTGCTG s mm5.chr11 22342947 14 - 121648857 -------ATTTCCAGCTGCTG s canFam1.chr9 14246536 14 + 53642819 -------gtgtccagctgctg s fr1.chrUn 303307737 11 + 349519338 ----------TGTAGCTGCTG s danRer1.chrUn 146354317 21 - 367113659 CAGCTTGAGTCCCGACTACTG a score=-106.0 s hg17.chr17_random 2436537 2 + 2618010 CA s panTro1.chr19 42707863 2 - 82489036 CA s mm5.chr11 22342961 2 - 121648857 TC s canFam1.chr9 14246550 2 + 53642819 cc s danRer1.chrUn 146354338 2 - 367113659 TA a score=24047.0 s hg17.chr17_random 2436539 89 + 2618010 GGACCACTtgctgccgccccagctgctgtgtgtccagctgctgcagaccccagtgctgccagtctgtgtgctgccagcccacctgctgc s panTro1.chr19 42707865 89 - 82489036 GGACCACTTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGACCCCAGTGCGGTCAGTCTGTGTGCTGCCAGCCCACctgctgc s mm5.chr11 22342963 80 - 121648857 AACCCTCCTGTGGTAGCTCCAGCTGCTGTGGTTCTAGTTGCTGCCGCCCCTGCTGCCGCC------CCTGCTG-CAGCC--CTTGCTGC s canFam1.chr9 14246552 89 + 53642819 gcccctcctgctccagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctgt a score=30687.0 s hg17.chr17_random 2436628 75 + 2618010 cgccccagctgctgcatctccagcagctgctgcccctcttgctgtgaatccagctgctgccgcccc------------------------tgctgctgc s panTro1.chr19 42707954 75 - 82489036 tgccccagctgctgcatctccagcagctgccgcccctcttgctgtgaatccagctgctgccgcccc------------------------tgctgctgc s mm5.chr11 22343043 63 - 121648857 AGCCCCTGTTGCCGTCCCT------GCTGCCGACCCTGCTGCCG------CCCCTGTTGCCGCCCC------------------------TGCTGCTGT s rn3.chr10 22127235 99 - 110733352 CGCCCCAGCTGCTGCATCTCCAGCTGCTGCCAACCCTCCTGTGGTGGTTCCAGCTGCTGCCGCCCCTGCTGTCAGCCCTGCTGTCGTCCTTGCTGCTGT s canFam1.chr9 14246641 57 + 53642819 ggctccagctcctgtggctctagctgctgccgcccctcctgctg------------------cccc------------------------tcctgctgc a score=11448.0 s hg17.chr17_random 2436703 11 + 2618010 CTGCGTCCAGT s panTro1.chr19 42708029 11 - 82489036 CTGCGTCCAGT s mm5.chr11 22343106 11 - 121648857 CTGAGACCAGT s rn3.chr10 22127334 11 - 110733352 CTGAGACCAGT s canFam1.chr9 14246698 11 + 53642819 cTGCGCCCAGT s danRer1.chrUn 146354715 11 - 367113659 CTGTGGCCAGT a score=74973.0 s hg17.chr17_random 2436714 107 + 2618010 CTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCATCTCCACCTGCCC------------------------CCGCCCCTTGTGCTGTGCCTCCTCTTGCTGCTA--AATCT-CTGCTG s panTro1.chr19 42708040 107 - 82489036 CTGTGGCCGAGTCTCCTGCCACACCACTTGCTATCACCCAACCTGTGTCATCTCCACCTGCCC------------------------CCGCCCCTTGTGCTGTGCCTCCTCTTGCTGCTA--AATCT-CTGCTG s mm5.chr11 22343117 104 - 121648857 CTGTGGTCAGGTCTGCTGCCAAACCACTTGCTACCGCCCCACCTGTGTCATCTCCACCTGCCC------------------------CCGCCCCATGTGCTGTGCCATCCCCTGCTGCTA--AATCT----CTT s rn3.chr10 22127345 107 - 110733352 CTGTGGTCAGGTCTGCTGCCAAAGCACCTGCTACCGCCCCACCTGTGTCATCTCCACCTGCCC------------------------CCGCCCCATGTGCTGTGCCACCCCCTGCTGCTA--AATCT-TTTGTT s canFam1.chr9 14246709 108 + 53642819 CTGTGGCCGGGTCTCCTGCCACACTACCTGCTATCGCCCCACCTGTGTCATCTCCACCTGCCC------------------------CCGTCCCATGTGCTGTGCCTCCTCTTGCTGCTG--AGCCCCCTGCCC s fr1.chrUn 303307751 132 + 349519338 CTGTAGCTGCTGCTGCTACTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTACTACTGCTGCTGCTGCTGTAGCTGCTGCTGCTACTGCTGTAGCTGCTGCTGCTGCTG--TAGCTGCTGCTG s danRer1.chrUn 146354726 92 - 367113659 -TTGAGTCCCGTCTGCTG----------TACTGAGGTCTCTCCTGATTCTGCCTGTTTGAGAC------------------------CCGACTGCTGTACTGAGGACTCTCCTGCTGCTGCCAGCTT------- a score=-662.0 s hg17.chr17_random 2436821 28 + 2618010 TGAACACACCACTTC--CTTATTACGTCCT s panTro1.chr19 42708147 28 - 82489036 TGAACACACCACTTC--CTTATTACATCCT s mm5.chr11 22343221 24 - 121648857 TGAATATGCCA------TTTATCTCTTCAA s rn3.chr10 22127452 24 - 110733352 TGAATGTGCCA------TTTACCTCCTCAA s canFam1.chr9 14246817 28 + 53642819 TGTGACCACCACCTCTGTTTACCTCTGC-- s danRer1.chrUn 146354818 26 - 367113659 --GAGTCCCAACTGC--TGTACTGAAGACT a score=9132.0 s hg17.chr17_random 2436849 24 + 2618010 -------TTCCTACAGATGAAGGCTCTCATT s panTro1.chr19 42708175 24 - 82489036 -------TTCCTACAGATGAAGGCTCTCATT s mm5.chr11 22343245 24 - 121648857 -------TCTCAGCAGATGAAGTCCTTCCTT s rn3.chr10 22127476 24 - 110733352 -------TCTCTACAAATGAAGTCCTTCCTT s canFam1.chr9 14246845 22 + 53642819 ---------CCCACAGATGTAGACCATTCTT s fr1.chrUn 309587122 24 + 349519338 -------TTCCAACATTTAAAGTCTCCAGTT s danRer1.chrUn 146354844 30 - 367113659 CTCCTGCTGCTGCCAGCTTGAGTCCCGACT- a score=-5776.0 s hg17.chr17_random 2436873 90 + 2618010 GCAAACA-TGCGGACTGTTC-AAGAGAAT--------TGAT---CTGGGTCCCATAAGCAAACC---TCA----TCCTTAGAAATTCTGTATTTGCATTCTACCTTTTGT s panTro1.chr19 42708199 91 - 82489036 GCAAACA-TGCGGACTGTTCTAAGAGAAT--------TGAT---CTGGGTCCCATAAGCAAACC---TCA----TCCTTAGAAATTCTGTATTTGCATTCTACCTTTTGT s mm5.chr11 22343269 94 - 121648857 CTAAAAAGTGCATAGTGTTT-GAGGGACT--------TGATCTCCTGAGTCCCAGAAGTCAGAC---TTG----TTTGCAATTGTTCCGTGTGAACATTCTGACTTCTGT s rn3.chr10 22127500 92 - 110733352 CTAAAAA--GTGCAATGTTT-GAGGGACT--------TGATCTCCTCAGTCCCAGAAGTCAGAC---TTG----TTTGCAATTGTTCCCTGTGCACATTCTGCCTTCTCT s canFam1.chr9 14239452 63 + 53642819 ---ACCA-TGTGGATGCCTT-AGGGG-----------TGGC---------------------------CA----TTCCCAACAACTGTATGCCCACACCCCAGCCTCAGG s fr1.chrUn 309587167 101 + 349519338 GCAAACA-AATGACCTGAAC-AAACCAGTTAAATATCTGAC---CTAATACCAGCCAGTAAGCCGCTGCT----GTCATGGCAACACTGTAATTTTTATCTGCTGTTTTT s danRer1.chrUn 146354874 89 - 367113659 GCAGTAC-TGAGGACTCTCC-----------------TGCCTGTTTGAGTCCCGACTGCTGTAC---TGAGGACTCTCCTGATTCTGCCTGTTTGAGTCCCAACTGCTGT a score=-4511.0 s hg17.chr17_random 2436963 17 + 2618010 -CCAAACTCCCTTCCT-------------------------------------TC- s panTro1.chr19 42708290 17 - 82489036 -CCAAACTCCCTTCCT-------------------------------------TC- s mm5.chr11 22343363 15 - 121648857 -CCAAAACTCTTGC---------------------------------------TT- s rn3.chr10 22127592 15 - 110733352 -CCAAAGTTCTTCC---------------------------------------TT- s canFam1.chr9 14239515 54 + 53642819 -CCAAACTCTCACCTTTGTTGACCATTTCCTCAGGTGGACTCAGAGTATGAAATT- s danRer1.chrUn 146354963 17 - 367113659 ACTGAGGACTCTCC---------------------------------------TGC a score=19778.0 s hg17.chr17_random 2436980 95 + 2618010 CAAAGGAATTCATTGACAATCTCCTAATAAATTGACAAATTGTCCTCCAACATCCTCCCACCTCTTTGACTTCAGGACATTTATTCATCATGCCT s panTro1.chr19 42708307 95 - 82489036 CAAAGGAATCCATTGACAATCTCCTAATAAATTGACAAATTGTCCTCCAACATCCCCCCGCCTCTTTGACTTCAGGACATTTATTCATCATGCCT s mm5.chr11 22343378 87 - 121648857 AAAATGATTTTATCAAATACCTCCAAATAGCTTAACAGAT----CTCCCACAACATGTCTCACCTTGTATTTT----TATCTATTCATCATGCTG s rn3.chr10 22127607 87 - 110733352 AGAATGATTTTATCAAAAACCTCCATATAGCTTAACAGGT----CTCCCCCAACATGCCTCAGCTTGTATTTT----TATCTATTCATCATGCTG s canFam1.chr9 14239569 85 + 53642819 AGATGATATTCATAGAAGAAATTACTAGAATTGCCCAAAT------TCTACATCTGACCT----TTTGATTTCTGGGTGCCAAGTCACTCTGTCC a score=50087.0 s hg17.chr17_random 2437075 185 + 2618010 AAGGAATTTGAAGATTGCCTCCATCATTTGTAGGGCCACAGATCTTAAAGCCTC-CAACCTTGAAGTCCAGTGAAGTCTCTCTCTTAAAGT-CTTTTGCAAACATTTTT--GTACCTTGTTATTTCCATGT-ACCAAAATAAACCTCTATTCTATTGGCACTGAAAATTGAATATGATTCTTATTCTCTT s panTro1.chr19 42708402 185 - 82489036 AAGGAATTTGAAGATTGCCTCTATCATTTGTAGGGCCACAGATCTTAAAGCCTC-CAACCTTGAAGTCCAGTGAAGTCTCTCTCTTAAAGT-CTTTTGCAAACATTTTT--GTACCTTATTATTTCCATGT-ACCAAAATAAACCTCTATTCTATTGGCACTGAAAATTGAATATGATTCTTATTCTCTT s mm5.chr11 22343465 182 - 121648857 GAGGAATTT--AAATTATCCCTGGCACTTAGATGAGTATGCATTTTTAATCCCCATGACATTAAAATCCACTAA---TTGTCTTTTATAG--CTTTTGCAAAGATTTTT-CATACTTTACTACTTCTGTGTAACAAAAATAAACATCCAACACAAGGATAATAAAAATTGAATGCGACTGCTTCTTTCTT s rn3.chr10 22127694 179 - 110733352 CAGGAATTT--AAATTATCCCTGGCACTTGGAGGAGCGTGCATTTT-AAGCTTG-TGACATTAAAATCTATTAA---TTGTCTTTTATAG--CTTTTGCAAAGTTTTTTTTATATTTTACTACTTCTGCATAACAAAAATAAACATCCAACACAAGGATAATGACAATTGAATGTGACTGCTTCTTTC-- s canFam1.chr9 14246952 184 + 53642819 AAACAAGATGGATATGGTCCAGAGCACTTATCCAGAAACAGATTTT--ACCCTT-CAACCTGACAAT-TGGTGAACTCATTCTCCCAACTTCCCTTTCCTAGGCCTTTTCTGTAACCTGATATATTTTTGT-ACCAAAATAAAGTTACACTTCCTTG-CATTAACAATTCAGTGTGATTGTTGCTCCCTT a score=0.0 s hg17.chr17_random 2437260 7 + 2618010 TTTAAAA a score=3822.0 s hg17.chr17_random 2437260 7 + 2618010 TTTAAAA s panTro1.chr19 42708587 7 - 82489036 TTTAAAA s mm5.chr11 22343891 7 - 121648857 TTTAAAA s rn3.chr10 22127873 7 - 110733352 TTTAAAA a score=-1018.0 s hg17.chr17_random 2437267 17 + 2618010 AGGG------------------TTTTATATTTAGG s panTro1.chr19 42708594 17 - 82489036 AGGG------------------TTTTATATTTGGG s mm5.chr11 22343898 35 - 121648857 AGAGAGAAAGAAACCTTGAAGCCTTTGCATATGTT s rn3.chr10 22127880 17 - 110733352 ATGT------------------ATGTGTAAATATG s canFam1.chr9 14247136 17 + 53642819 AAGA------------------TTTTGTCTTCAGC a score=2811.0 s hg17.chr17_random 2437284 8 + 2618010 TCCTGGGT s panTro1.chr19 42708611 8 - 82489036 TCCTGGGT s mm5.chr11 22343933 8 - 121648857 TCCTGGGT s canFam1.chr9 14247153 8 + 53642819 TTGTAGGC a score=4128.0 s hg17.chr17_random 2437292 21 + 2618010 GATTACATTTAAC-TACACCTG s panTro1.chr19 42708619 21 - 82489036 GATTACATTTAAC-TACACCTG s canFam1.chr9 14247161 22 + 53642819 AAGTATATTTAACTTACACCTG a score=825.0 s hg17.chr17_random 2437313 17 + 2618010 TAGGGCTCACAGCACAG s panTro1.chr19 42708640 17 - 82489036 TAGGGCTCACAGCACAG s mm5.chr11 22345518 17 - 121648857 AAAAGCAGACAACATAT s canFam1.chr9 14247183 14 + 53642819 CAGGATATACA-CAT-- a score=18473.0 s hg17.chr17_random 2437330 154 + 2618010 ATTAGTCAACCTTCT-AACAGAGGTCAACTGACATCG-------------ATCACTGCCTAG----------TTTTTTTCTAGAAAAGTCTTTTCAGGCT-TA-----GGCAAATCAATTA--GTCATTTTGTATTCTTTAGACAAAAAGAGTGAAGCTGAAGTCATGAAAT------ATCCATGAATATAA--- s panTro1.chr19 42708657 154 - 82489036 ATTAGTCAACCTTCT-AACAGAGGTCAACTGACATCG-------------ATCACTGCCTAG----------TTTTTTTCTAGAAAAGTCTTTTCAGGCT-TA-----GGCAAATCAATTA--GTCATTTTGTAGTCTTTAGACAAAAAGAGTGAAGCTGAAGTCATGAAAT------ATCCATGAATATAA--- s mm5.chr11 22345535 143 - 121648857 ATGAGTCAAACTTCT-GAGAGA----AATGCGTGTTG-------------ATCACTCCCTCG-----------TTTTCTCTAG-AAAGTCTTCTTTGTTT-CA-----GATAAATTAATTG--CTTGGTAGTTTTTTTTTAGGGGAGTAGGATTAA----AAATGATGAAGC------AGCCGTGAGTAC-A--- s rn3.chr10 22129868 177 - 110733352 ATGAGTCAAAATTCT-GAGGGAAATGAAGTAGCCTCGTGTTTAGAAAGTCTTCATTGTTTCAGGTAAATTAATCACTTTCTAGGGATGTTTGTTTTGTCT-TGTTTTTGTTTGTTTGTTTG--TTTGTTTGTTTGTTTTTAGGGGAGTGGAATTAA----AGATAATGGAGC------AGCCATGAGTAC-A--- s canFam1.chr9 14247197 158 + 53642819 ----GTCA--CTTCTCAATAAAAGTCAGGTTCTATTA-------------TTCACTGCCTGA----------TTCTTTCCTA--CATGCCTTCTTATTTCATG-----GGCTAATCACCTAACACTATGAACCCGTTCTTGGAAAAGAAACAAAAAAGTGAAAACTAGAAGTTTGGAAGACTGTAGGTAT-ATAA a score=12200.0 s hg17.chr17_random 2437484 39 + 2618010 CAACAGGG-GAAACATTTTGAAAGATTGATCACAACTCAT s panTro1.chr19 42708811 39 - 82489036 CAACAGGG-GAAACGTTTTGAAAGATTGATCACAACTCAT s mm5.chr11 22345678 40 - 121648857 TAACAGGGAGAATTATCTAGGAAGACTGCACACAGCCCAC s rn3.chr10 22130045 40 - 110733352 TAGCAGGGAGAATTATCCAGGAAGACTGAACACAGCCCAC a score=42666.0 s hg17.chr17_random 2437523 466 + 2618010 CATCTTTTAAAAAATAAtttcaacttttattttagaatcaaagagtacatattcgtatttgttacatgttgtgtgatgctgaggtttgggctacaaatgattctgtcaccaggtactgagcagtgggtcatttttagcccttcctctctccctctctcccccctttttggagtccccagttgttctcatctttgtgtccatgtgtatccaatgtttagctcccatttgtaagtgacaacatgcaatatttggttttctgttcctggaaaaatttgcttaagataatgtcctccagccacatccatgttgctgcaaaggacaaaatttcattcttttttatggctgtgtagtattccatggtgtgaaaatgtcacatgttctttatccaatgcactgttgatgggcacctagactgattccatgtctttactattgtgcacagagctgtgatCTTTTAAAACACTGT s panTro1.chr19 42708850 465 - 82489036 TATCTTTTAAAAAATAAtttcaacttttattttagaatcaaagagtacatattcgtatttgttacatgttgtgtgatgctgaggtttgggctacaaatgattctgtcaccaggtactgagcagtgggtcatttttagcccttcctctctccctctct-ccccctttttggagttcccaattgttctcatctttgtgtccatgtgtatccaatgtttagctcccatttgtaagtgacaacatgcaatatttggttttctgttcctggaataatttgcttaagataatgtcctccagccacatccatgttgctgcaaaggacaaaatttcattcttttttatggctgtgtagtattccatggtgtgaaaatgtcacatgttctttatccaatgcactgttgatgggcacctagactgattccatgtctttactattgtgcacagagctgtgatATTTTAAAACACTGT a score=925.0 s hg17.chr17_random 2437989 8 + 2618010 ATTTCAAT s panTro1.chr19 42709315 8 - 82489036 ATTTCAAT s mm5.chr11 22345730 7 - 121648857 ACTTCAA- a score=145134.0 s hg17.chr17_random 2437997 833 + 2618010 TTCTTTTTTTTTCCAGTAAAAGCAGCTATTAGGTGGTTTAGCAAAGTCCATGTATTTTCTACT---GAGTCATGTGTAATGAATCCTCAACACAAACACAGTGGATCTCCTTCATTCTGACTGGCAGAGTTTCAATGGGGAGTTCATGCTGCCATGTAGAGAGGGCCACCTTCACGGCCAGGCAGGTGATGGAAATGAAGGAAGCAGGCCTAGTGAAAACTCACAG-GTATGCTGGAGACTGATTTTTTTTCTTTTCGTCCAAAGTCATGCCCTTTTTTTAGGatgaaactataaagacccacatttctcccc---aactagggatgcctctaatgggtcatctcatctccagaactccctataggttcatctgagacttccacggagattgccctgcag-tttgatttatcccagtgtcaaacttgatctttctctcactttcccttcctttcccttcccttcccttccctt--------------------------------------------------------cccttcccttcccttcccttccctttccctccccttccccttccctttccctttcccctcccctccctttcccctcccctgccctccccagtgttaatcccaagagcatgcttcaataaacctcctgcatattgctctccatctcagtgactgcttcctggggaacccagcctgTCCCCCAAAACAATTTGAAATTCATGATAGCTAATTTGAGAGCTCAAATGACTGACTGAAATGTACTTTTAATATTTTAGTTCCTGAAAGAAATAAGAATGTAAACATAATAGCAGAAAATATATTTAACAGAATATGT-AGAAAAATTATGAATTTTATATAAATCACATTTATTATTTTCTAAGGATGTTTAG s panTro1.chr19 42709323 889 - 82489036 TTCTTTTTTTTTCCAGTAAAAGCAGCTAATAGGTGGTTTAGCAAAGTCCATGTATTTTCTACT---GAGTCATGTGTAATGAATCCTCAACACAAACACAGTGAATCTGCTTCATTCTGACTGGCAGAGTTTCAATGGGGAGTTCATGCTGCCATGTAGAGAGGGCCACCTTCATGGCCAGGCAGGTGATGGAAATGAAGGAAGCAGGCCTAGTGAAAACTCACAG-GTATGCTGGAGACTGATTTTTTTTCTTTTCGTCCAAAGTCATGCCCTCTTTTTAGGatgaaactatagagacccacatttctctcc---aaccagggatgactctaatgggtcatctcatctccagaactccctataggttcatctgagacttccatggagattgccctgcag-tttgatttatcccagtgtcaaacttgatcttcctttcactttcctttcctttcccttcccttcccttcccttcccttcccctcccttcccttcccttcctttcccttcccttcccttctgtttccctccccttcccttcccttcccttctctttccctccccttccccttccctttccctttcccctcccctccctttcccctcccctgccctccccagtgttaatcccgagagcatgcttcaataaacctcctgtatgttgctctccatctcagtgtctgcttcctggggaacccagcctgTCCCCCAAAACAATTTGAAATTCGTGATAGCTAATTTGAGAGCTCAAATGACTGACTGAAATCTACTTTTAATATTTTAGTTCCTGAAAGAAATAAGAATGTAAACATAATAGCAGAAAATATATTTAACAGAATATGT-AGAAAAATTATGAATTTTATATAAATCACATTTATTATTTTCTAAGGATGTTTAG s mm5.chr11 22345737 667 - 121648857 ----TGTTGAGGGAATTAAACACAACCAGTGGTCAGCTTAGCAATATCATTATATGTTCTACTCCAGAGTCAAGTGTGGT-AAGCCTGTGTCCACATCCAG-------GCTTCACCGGG---GGCAGATTATCAGTGGGACATACATCCTTCTGCATAGA-AAGACCATCTCTGAGG-CAGACAGGTAATGTGGATGAAAA--------CTGGGCAGAACTCATTGCAGTTGCTGAAGG-TGGTGACATTTC------CCCAAGGCTG---CCCCTTTCCCGGGTGGCATGATCAAAAAGCACATTTCCCTCCCGAATTTAGACGTGCTTCAAACACGTCATTCCATGTTCTGAACTCCGCAGAAGACAGACTTAGCCTGCCCGTGAGGTATCCTTCCAGTTTTGTTTTGTCCCAGTATCTAA-----------TCCCAGTATCTCTTTCCTTCCCTTCCAGGACA-----------------------------------------------------------------------------------------------------------------------------------------------------------GTTGATCCCCAGAACATGTCCCCATGAGCCTTCAGCATGCCGATCTCTGCCTCAGCACATGCTCTCTGGAGATTTCCATCTATTCC----AAAAACCTG---CCCACGATCGATGACTTGAGAGCTGTAACTATTCATTAAAGTGAATGTTCAATCTGCCTGTGCCTCGTAGAAATAAGAATACAAGCATGATGGCAGAAACT-CGTTGCACATAATCCATGAAGAAAATTATTAAGTTTATTCAATTAACATTT---------------------- s rn3.chr10 22130096 680 - 110733352 TTCTCATTGGGAGGATTAAAAACAGCCAATGGGCAGCTTAGCAAAATCTTTACATGTTCTACTCCAGAGTCGAGTGTGGTGAACCTCGTGTCCACATGCGT-------GCTTCATGAG----GGCAGGTTATCCATGGGGCATTCATCCTCTCATGTAGA-AAGACCATTTCTGAGG-CAGACAAGTGATGTGAATGAAAG--------GCAGGTAAAGTCCTTTGCAGTTGCTGGAGG-TGGTGGTTTTC-------TCTGAGGTTG---TCCCTTTCCCAGGTGGCGTGATAAAGAACCACATTTCCC------ACTTAGACATGCTTCAAACATGTCATTCCATGTTCTGAACTCCCCCCAAGACTA-CTAAGCCTGCCCACGAG-TACCCTTCCAG-CTTTGTTTTTCCCAGTATCTAA-----------TCCCACTCTC-------TTTCCTTCCCTTCCA------------------------------------------------------------------------------------------------------------------------------------------------------CGAGAGCTGATCCTTAAAACATGTCCC-ATGAACCTGCCGCACGCTGATCTCTGTCTCAGCTCATGCTTTCTGGAGATTCCCACCTCCTCC----CAAAACCTG---TTCATGATTGATGGCTTGAGAGCTAGAACCATTCATTAAAATGGATGTTCAATCTCTCGGTGCCTCGTAGAAATAAGAATGCAAGCACGACGACAGAAA-TATGTTGCACGTGATCCAAGAAGAAAATAACAAAGTTTATATAAATAACATTTATTCCTTTCTAGGAAAATCTCT a score=3057.0 s hg17.chr17_random 2438830 11 + 2618010 ATCATTTATAC s panTro1.chr19 42710212 11 - 82489036 ATCATTTATAC s mm5.chr11 22346404 11 - 121648857 ATCATTTATAC a score=58842.0 s hg17.chr17_random 2438841 663 + 2618010 ACAAATATATGCTCTTTAAACATTTAGACAATACAAAAGAATGTGACAATGTGAAC-AAAAGTAAGTTTCCCATCATGATCTTTGCCAATCCCATTCAATACCTAATGTTGCAAATTGAGATACATCCTCATTAAATGCATGCATAAAACATGTATGTATTTATTTGAAAACTTGGCTTTCGTTGCACATCTCTTGTTCTGACATTTATTCAAACATTATTTTATGTCCTTCCGGAAATGTTAACATTTTCCTTCACAAAGGCTTGGCAGATTTATTTACATATTTTTCTATTTACTCTTGAGAACTGTGAGTACATGCTTCttttttttttt--attatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatttctcctaatgctatccctcctccctccccccaccccacgacaggccccagtgtgtgatttttctcCATTAAATTTTAGAGAGAATTATTGCTAGTGTATAAAAAGTCTATGGATTAGTATAAGTTCATATTTTATCTGATCTCGCGATTCACACTAATACCCAGCTGACTCTACAGGATTTTACAGGTGTGCAATCATGGTGGCCAAGTGCCTCCAGC s panTro1.chr19 42710223 663 - 82489036 ACAAATATATGCTCTTTAAACATTTAGACAATACAAAAGAATGTGACAATGTGAACAAAAAGTAAGTTTCCCATCATGGTTTTTGCCAATCCCATTCAATACCTAATGTTGCAAATTGAGATACATCCTCATTAAATGCATGCATAAAACATGTATGTATTTATTTGAAAACTTGGCTTTCGTTGCACATCTCTTGTTCTGATATTTATTCAAACATTATTTTATGTCCTTCAGGAAATGTTAACATTTTCCTTCACATAGCCTTGGCAGATTTATTTACATATTTTTCTATTTACTCTTGAGAACTGTGAGAACATGCttc---tttttattaaattatactttaagttctagggtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatttctcctaatgctatccctcctccctccccccaccccacgacaggccccagtgtgtgatttttctcCATTAAATTTTAGAGAGAATTATCGCTAGTGTATAAAAAGTCTATAGATTAGTATAAGTTCATATTTTATCTGATCTCACGATTCACACTAATACCCAGCTGACTCTACAGGATTTTACAGGTGTGCAATCATGGTGGCCAAGTACCTCCAGC a score=4862.0 s hg17.chr17_random 2439504 30 + 2618010 CTCAGGCTTGTCCCTggggttcgtccccag s panTro1.chr19 42710886 30 - 82489036 CTCAGGCTTGTCCCTggggttcgtccccag s rn3.chr10 22131397 30 - 110733352 CTCACTCACACACCTGGGCTTTGCCCACAG a score=89205.0 s hg17.chr17_random 2439534 437 + 2618010 ctgcccacagtgggggccttaccattaacacaaacactgttgggattttctacctttcctgtctta-ctttcaccgtttcctcacttgtgcttcctgggatcatcccccaaataaattatgtgcactcaggtctttttctcaaggtt-tgcattgggtagaa-tttaagctaagacaACAGATTATCAGCAAACATTTTTGGCTGACTGATACGAAACAGGAAATAATAGTTATTTCAATCAACAAGAGTAAAACGAGGAAGTCAGGAG----GTGAAGGAGAACCAGTGCTACCATCTGGCGTTTACTTCCTTCCTGTCT--TTTTACT-GTGTGAATATAGGCATGCACGTTCAACACTGTATTCT-------------TGGTTATCTATAAACAAGTCTCATTCTATAAATTGAATCTTGACTTCCGCAGTTTCC-ACGTATGTTATTTATCAGGTGA s panTro1.chr19 42710916 438 - 82489036 ctgcccacagtgggggccttaccattaacacaaacactgctgggattttctacctttcctgtctta-ctttcaccgtttcctcacttgtgcttcctgggatcatcccccaaataaattatgtgcactcaggtctttttctcaaggtt-tgcattgggtagaattttaagctaagacaACAGATTATCAGCAAACATTTTTGGCTGACTGATACCAAACTGGAAATAATAGTTATTTCAATCAACAAGAGTAAAACGAGGAAGTCAGGAG----GTGAAGGAGAACCAGTGCTACCATCTGGCGTTTACTTCCTTCCTGTCT--TTTTACT-GTGTGAATATAGGCATGCATGTTCTACACTGTATTCT-------------TGGTTATCTATAAACAAGTCTCATTCTATAAATTGAATCTTAACTTCCGCAGTTTCC-ACGTATGTTATTTATCAGGTGA s mm5.chr11 22346695 391 - 121648857 CTGCCCACAGT-ATAATCTCATCATTAATACAAATGCT-TTGGGTTTTTCCTTCCTCTTTGGACCA-TTTTCCCCATTTCCTCTCTCGAACTTTCTGGGAT---------------------------GGAGTCTTTGTTCAAGGTTCTAGAGTGTATACAA-TTCAAGCAAAGTCAGGGGACGTTCAG-AAATATTTTCGCCTAATTG-----------------ATAGTT-TTCCTAGCAGTAAGAGTAAAACTGGGAAGTCTGGGGC--AATAAAAAAAAATAGGTGTTATGATTTGG---TTAGTGCCTCCCTTCCTACCCTTGCC-CTATGGCTGTAGACAAGTGAGTTGAGCAGTGTGTTTG---------TTGATGGACATCTGTAAACGAGTCTTCCCCTGCAAATCAAGT-----TTTCTGCAGCTTCCTGCACATAGCCTTTATGTGGTGA s rn3.chr10 22131427 394 - 110733352 -----------TTTAATCTCATCATTAATACAAATGCT-TTGGATTTCCCCCCACTCTTTGGACCAGTTTTCCCCAATTCCTCTCTTGGACCTTCCAGGAT---------------------------GGAGTCTTTGTCCAGGGTTCTGTAGTGTGTGAAA-TTCAAGCAAAGTCAAAGGGTGTTCAG-AAATATTTTGGGCTAATTG-----------------ATAGTT-TTCCTAGCAGTAAGAGTGAAACTGGGAAGTCTGGGGCAAAAACAAAAAATATGGATGTTATGGTTTGG---TAAGTGCCTCCCCTCCTACCCCCACTCCCATGGCTGTAGACATGTTAGTTGAGCAGTGCACTCTCAGTGCACATTCATGGACGTCTGCAAACAAATCTTCCACTGCAAATCAAGG-----CTTCTGCAGCTTTCTACCCATAGCCTTTATCTGGTGA a score=2578.0 s hg17.chr17_random 2439971 43 + 2618010 --CATGTTACCTATCACACAAATGAGTTTAGTCTTCCTGAAATG------------A s panTro1.chr19 42711354 43 - 82489036 --CATGTTACCTATCACACAAATGAGTTTAGTCTTCCTGAAATG------------A s rn3.chr10 22131821 57 - 110733352 GACACCCTCAGTGCCGCATAAGCAATATGAATATTTGGCTAATGGATTAGATAAATA a score=9072.0 s hg17.chr17_random 2440014 81 + 2618010 AATTATGATTTCTTTGTTTGGGATGTTTTCCTCCCTTTTATCCAGAAGTCAAAAGATATATACATTTTTTAAAGGACCTTA s panTro1.chr19 42711397 81 - 82489036 AATTATGATTTCTTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATATATACATTTTTTAAAGGACCTTA s rn3.chr10 22131878 55 - 110733352 AATGGTGACTTTT-------GAACTATTTCCTGTCTTTTCTCCA-----------ATACATAC-------AATGGCCCAT- s canFam1.chr9 14264392 70 + 53642819 AATCATATCACCATTGTCT-GAATATTCTTTTTTCTTTTCTCCA----------TCCATATATATTATCTATAGTATGATA a score=3616.0 s hg17.chr17_random 2440095 45 + 2618010 -----------CATGCCTCTATGTCATCAAAAAAACCttcattcactcaacaaaca s panTro1.chr19 42711478 44 - 82489036 -----------CATGCCTCTATGTCATC-AAAAAGCCttccttcactcaacaaaca s mm5.chr11 22347193 32 - 121648857 -----------CCTGCTCCTATG------------CCTCCATCCATTCCACAAAC- s rn3.chr10 22131933 27 - 110733352 -----------------CTTGCG------------TTTCCATCTACTCCACAAACC s canFam1.chr9 14264462 55 + 53642819 AAGGGTGAGTAAATGC-ACTATGTTTTCAATAAATCCCAcattcatttaattaaca a score=-2826.0 s hg17.chr17_random 2440140 109 + 2618010 tttaccaccagtgttctctgtgctgagtatcatggtaacgagaataaatgccatagcgcaagccttcagggtat-ttgcattgcacgtggtggaaagacagaagtaaatg------- s panTro1.chr19 42711522 109 - 82489036 tttaccaccagtgttctctgtgctgagtatcatggtaacaagaataaatgccatagcgcatgccttcagggtat-ttgcattgcacgtggtggaatgacagaagtaaatg------- s mm5.chr11 22347225 6 - 121648857 -----------------------------------------------------------------------------------CACTTG---------------------------- s canFam1.chr9 14264517 112 + 53642819 ttcattcagagtaat-----tgctaggcaccatgtttgtatatatgaataagacagtctggcctcatggagtatatagaaggactggaggaaaaaagatataagccaattatgttag a score=58863.0 s hg17.chr17_random 2440249 438 + 2618010 actatgatacaggagaatgta-taaattatgagcacaaggcaggaaatcatgatacatgaatggggtagcttagcaggaaagatattattgaggaggaaatattttaactgggtcttgacacatgagtaggagtttgcagagtggacaaaaaaagatgaaacattccaaga-agatgaagcagtttcagcaagcttagCAAATT-GTATTCTTTACGGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaaccttggacaagttgtttgtttgtttgttttaagtttttaatgcttcttttgagtattcccctaaaagactaataagaatataa-actagttcataaggttctat-taaagcgtgaa-aatgaaacaaatgtaa------gatatttggt--------------------------------------------acaatgcctgctacatagt-------------------------------------------------------caatacttcacaagtAATA s panTro1.chr19 42711631 434 - 82489036 actatgatacaggagaatgta-taaattatgagcacaaggcaggaaatcatgatacgtgaatggggtagcttagcaggaaagatattattgaggaggaaatattttaactgggtcttgacacatgagtaggagtttgcagagtggacaaaaaaagatgaaacattccaaga-agatgaagcagTTTCAGCAAGCTTAGCAAATT-GTATTCTTTACGGCTTTCTTGGCTACACTAAGACGTATTAGGcttactttctctttaaccttggacaagttgtttgtttgtttgttttaactttttaatgcttcttttgagtattcccctaaaagactaataagaatataa-actagttcataaggttgtat-taaagtgtgaa-aatgaaacaaatgtaa------gatatttggt--------------------------------------------acaatgcctgC----TAGT-------------------------------------------------------CAATACTTCACAAGTAATA s mm5.chr11 22347231 391 - 121648857 ----------------------------------ACAAGGAGGG---TCATGACATGTGAGAGGGCCA-TTTAGCAGGACAGACACCACGCAGGAAAGAACATCTCTGTTGAGCCTTGATGGCTGAGCAG-------------------------------CATTCCAAGA-AGATAAAACACCTCCAGCAAAGGCTCCAAGCT-TAATTCTTCAT-TCTCCTTCTGCTACTCAGAGGCAGGTTCAGCTCACGTTGTGTTTCCTCTTGGGCAGATGTTTTG-------ATTTTAGCCTCTCTGTGCTTCTTTAAGCTCCTCTATCAAAAGAAGAATGAG----TAG-AC---TTCATAGAACTGT----------TAAA-AACAGAAAAAATATAATCACACAATGTTTGATTCATGGTGACACTTTACAATTTATTCCCCCTAGACACAACCCACACAGTGTCTAATATGTAGG--------------------------------------------------------GACATTTTACAAAC---- s rn3.chr10 22131960 429 - 110733352 ACTATCATGAAGTAGAATGTGCTGAGTT------AGAAGTTAGG--GTCATGACATGTGAAGAGGGACGTTTAGCAGAACAGACACCGTGCAGGAGCAAACATCTCTGCTGAGTCTTGATGGGCGAGCAG-------------------------------CATTCCAAGA-AGATGAAACACCTCCAGCAAAGGCTGCAAGCT-TAATTCTTCAC-ACTCCCTCTGCTACTCAGAGGCAGGTTCAGCTCGCGTTGTGTTTCCTCTTGGCCAGATGTTTCG-------GTTTTAGCCTCTCTGTGCTTCTTTAGTCCGCTCTATCAAAAGAAGAATGAA----TAGCAC---ATCAGAGAACTATGT--------TAAA-AACAAAAGAAATACAA------TACAATCAC---------------------------------------------AAAGTGCCTGATACATAGTTACACTTTACAAACTATATCCCCTACACACAGCACACACAGGGTCAAATGTGTAGCAACATTTTACAAAC---- s canFam1.chr9 14264629 413 + 53642819 agtgtgataccttatatcacaggtatcttggagcaaaagggaaagaaagattcattttgaatggggta-gatgtcaagaaagacattagaaatgagttgatatccagactagacatttatatatgagcaagagttagttaaattgacaagggagaaag---cacattaacacaaatgaaacagtatgaggaaggacATGGGATTATTACTCCTCAT-AAGTCTTTGAATATTCTAGGAAAGAACCA----------TCTTCCTTATTGACTACATGATTtc------------aatctatctaagcctcagttacctcatgt-ctgaagaattaagaaaaatcctg-accacctcttagaagcccctgtgaagtataaataaggtaacaattacag------aagactcag---------------------------------------------aaaattcctgacacacaac-------------------------------------------------------aggcac-tcaaaaatagta a score=54227.0 s hg17.chr17_random 2440687 212 + 2618010 TACATA-CCATGA-GGGTGTATGGAACTTATCCACATATTATACATTTTTTATTTTAGTTGTTTAATGAAAATAATTG---------TAATTCTTTTCATTTCTGCCAAACTGTTTCCTATCCATGTGTCTTATGCAAGTACCTGCAAGAAAAAGTTGAGGGTTTATCTGTTCTACACCCAGAGTACCCAATAGAACATCTTGGATGCATGTTATTGAAGGCT s panTro1.chr19 42712065 214 - 82489036 TACATACCCGTGAGGGGTGTATGGAACTTATCCACATACTATACATTTTTTATTTTAGTTGTTTAATGAAAATAATTG---------TAATTCTTTTCATTTCTGCCAAACTGTTTCCTATCCATGTGTCTTATGCACGTACCTGCAAGAAAAAGATGAGGGTTTATCTGTTCTACACCCAGAGTACCTAATGGAACATCTTGGATGCATGTTATTGAAGGCT s mm5.chr11 22347622 219 - 121648857 TACACTCCCACCAAGAGTACATGGGACACATTCATATACTGCATA-TTTTGATTTTAGTTGCTTCATTTAAGTCATTGCATTAAGATTAAGTCTTAAT-CTTGTGCCAAATGCTTCCCTCTGCCTGTGTCCTATCCAACCACTCACAGAAAGGAGT--AAGGGCTACTTGTTCTGTGCTAAGAACAGTCAGCAAAAACTCTTTCATATATATTGCCAAAGTCT s rn3.chr10 22132389 210 - 110733352 TACACCCCCACCAAAGGTACGTGGAACACATTCAAATACTGCACA-TTTTGATTTTAATTATTTCATTAAAGTCATTG---------GAATTTTTTAT-CTTGTGCCAAATGGCTCCCTCTGACTGTGTCTTTTCCAACCACTCACAGAAAGGAGT--GAGGGTTACCTGCTCTATGCCTAGAATAGCCAGCAGAAACTCCTGCACATATATTGCCAAAATCT a score=273.0 s hg17.chr17_random 2440899 1 + 2618010 T s panTro1.chr19 42712279 1 - 82489036 T s mm5.chr11 22347841 1 - 121648857 T a score=364.0 s hg17.chr17_random 2440900 4 + 2618010 AATA s panTro1.chr19 42712280 4 - 82489036 AATA a score=1870.0 s hg17.chr17_random 2440904 11 + 2618010 ATTCTAAATAT s panTro1.chr19 42712284 11 - 82489036 ATTCTAAATAT s mm5.chr11 22348787 11 - 121648857 ACTCTGTACAT a score=12180.0 s hg17.chr17_random 2440915 72 + 2618010 TCTTTATATATAACAAATGCTTTTGTA---AATGAAAAATCCAT-CATGCAATTTTGATGATC-AAAGATTAATCAg s panTro1.chr19 42712295 73 - 82489036 TCTTTATATATAACAAATGCTTTTGTA---AATGAAAAATCCATCCATGCAATTTTGATGATC-AAAGATTAATCAg s mm5.chr11 22348798 61 - 121648857 TTTTT----------AATGTCTTGGTGAGCAAAAAAAAATCTAC-TGTGCAGTTTC-ATGATTAAAAGATGAA---- s rn3.chr10 22133320 68 - 110733352 TCTGTGTGTTTTTTGAATGCCTTAGTG---AGCAAAAAATCTAC-TATGCAGTTTC-ATGATTAAACAATGAA---- a score=24219.0 s hg17.chr17_random 2440987 291 + 2618010 gctgggt---gttgggggctcatgcctgcaatcccaacactttgggaagccaaggcaggtggatcacggggtcaagagatcgagaccatcttggccaacatgatgaaaccctgtctctactaaaaatacaaaagtaagctgggtgtgat-ggcgcaaaccaccttactcgggaggctgaggcaaaagaatcgtttgaacccaggaggtggaggttgcagtgagcagagatcatgccactgtactccagcctggcgacagattgagaatctgtcaaaaaaaaaaaaaaaagataaa s panTro1.chr19 42712368 288 - 82489036 gctgggtgcagt----ggctcatgcctgcaatcccaacactttgggaagccaaggcaggtggatcacggggtcaagagatcgagaccgtcttggccaacatggtgaaaccctgtctctactaaaaatacaaaagtaagctgggtgtggtgggcgcaaacctccctactcgggaggctgaggcagaagaatcgcttgaacccaggaggtggaggttgcagtgagcagagatcatgccactgtactccagcctggcgacagattgagaatctgtc---aaaaaaaaaaaaagataaa a score=13844.0 s hg17.chr17_random 2441278 53 + 2618010 TCAAAACTTCCTACTCATAATGCATATACTGTAAGACATACAGCAAAA-----TGTGT s panTro1.chr19 42712656 53 - 82489036 TCAAAACTTCCTACTCATAATGCATATACTGTAAGACATACAGCAAAA-----TGTGT s mm5.chr11 22348859 54 - 121648857 TAAAATTTCCCCACTCTTAATCGTTCTTCAGAAAGACATACAAAAAAA----CTGAGT s rn3.chr10 22133388 58 - 110733352 TAAAATCTCCCCACTCTTATTCGTTCTTCAGAAAGACATACAAAAATAATAATTGAGT a score=1820.0 s hg17.chr17_random 2441331 2 + 2618010 TT s panTro1.chr19 42712709 2 - 82489036 TT s mm5.chr11 22348913 2 - 121648857 TT s rn3.chr10 22133446 2 - 110733352 TT s canFam1.chr9 14245649 2 + 53642819 tt a score=15529.0 s hg17.chr17_random 2441333 81 + 2618010 TTACCCTTTAAAGGCAG-TGAGTCATGGGTAAGTACTTTCGCTGGAGGCTGTGGAATAAGATCTGAC--AGAGTTTAGAACTTC s panTro1.chr19 42712711 81 - 82489036 TTACCCTTTAAAGGCAG-TGAGACATGGGTAAGTACTTTCGCTGGAGACTGTGGAATAAGATCTGAC--AGAGTTTAGAACTTG s mm5.chr11 22348915 80 - 121648857 CTATTATTTCTAGGTAGTTGCACCACTGCCAAGCTCTTCGACTTAAGAGACTGGAATGAGATCTGAT----AATTTAGAATGTT s rn3.chr10 22133448 80 - 110733352 CTATTATTTCTAAGTGGTTGCACCACTGCCAAGCTCTTTGACTTAAGATAGTGGAGTGAGAGCTGAC----AATTTAGAATGTT s canFam1.chr9 14245651 80 + 53642819 tcaatatTTACAAACAA-TGAGTCATTGGTAACGGTTCCAAACTGAACACAGGAAGTGATACTTAGCACATACTTTGAGAC--- s danRer1.chrUn 236495693 81 + 367113659 TTACCTTGGTAAAGAGG-TTGGCCAGGGCCAAGTACGTCCGGTGGAGGC--TAAAGTTACAGTGATCACGGAGTTTCCAATTCC a score=67834.0 s hg17.chr17_random 2441414 299 + 2618010 TTGGGATCTGACCATCTGCCC----GACCATCCGAGATGCACACATGGGATCAGAGTCATCCTCATTACAGATGGGACATCCTTCCCCAAATGAGTGCTTCCTTCTAATTCCTTCCCAACATTTCACCTGACCAGGACATTCTTTGACAACAAAAGATACATTCACA-TTATAAAAATCATCCCCCATGATTTGCAGACAGCAATCTGCAGGTAGGAGGGAGAG-TCACATTT-AAAAACA-AAATGTCAGAGAGTCCTGTGACCAGTGCTTTGTAAAAGACACTGCATAGACCAGGGACAAAGGTG s panTro1.chr19 42712792 299 - 82489036 TTGGGATCTGACTATCTGCCC----GACCATCCAAGATGCAAACACGGGATCAGAGTCATCCTCATTACAGATGGGACATCCTTCCCCAAATGGGTCCTTCCTTCTAATTCCTTCCCAACATTTCACCTGACCAGGACATTCTTTGACAACAAAAGATACATTCACA-TTATAAAATTCATCCCCCATGATTTGCAGACAGCAATCTGCAGGTAGGAGGGAGAG-TCACATTT-AAAAACA-AAATGTCAGAGAGTCCTGTGACCAGTGCTTTGTAAAAGACACTGCATAGACCAGGGACAAAGGTG s mm5.chr11 22348995 271 - 121648857 CTCAGGTCTGCACATTTCCCA----GATCCTCTA--ATGGACACACAAAATCACCATCATTCTCATGAAAGAT-GGACAGTCTCCTTCTAAATGGCCTTTCCTTCTAACTCCTTCT---AATCTCACCTGGGAGGAACACTCCTTGATAGCAAAAGGCATACTGGAATTTGTGGAAGAGCATTTCTATGATTTTCA---AGGAATGTACGGATGGAAGGGAATG-CCACGTTTAAAAAACA-AAATGCCAGAGAGTCCTGTGACAAGTTACTTGTAGCA---------------------ACAGGTG s rn3.chr10 22133528 276 - 110733352 CTCAGGCCTGCTCATCTCCCA----GATCCTCTA--CTGGACGCACAAAGTCACCATCGTCCTCATGAGAGAT-GGACAGCCTCCTTCTAAACAGTCTTTCCTTTTAACTCCTTCCTG-AATCTCGCCTGGAATGAACATTCCTTGACAGCAAAAGGCATACTGGATTTTGTGAAAGATTATTTCTATGATTTGCAAGGAATGGTGTTCAGATGGGGGAGAATG-TCATATTTGGAAAACA-AAATGCCAGAGAGTCATGGGACAAGTTACTCGCAACA---------------------ACAAGTG s canFam1.chr9 14245731 260 + 53642819 ----AGCCAGATTGTATTCCCTAATGAGTATTTGTGACTCACACATAGGGTC--TGTCTTCCTCATAGCCCAC-AGGTAAC--TCATAAAAATGAACTTTTCTCT--ATTCCCTACTATAATTATACCT---------CTCTTTTGACATCAAAAGAGACTTTGATA-TCATGTGA----------ATAATTTGTCCA-AACAACATCATGGTAGGATATACAGATCATAG---GAAAACATCAATGATTGA-ACCCATGTGATGGGTCCTTTTGATAA----------AGAAAATAGA-AAAGACA a score=10473.0 s hg17.chr17_random 2441713 50 + 2618010 ACTCCCCACTAATGAAGAAATATGACATGCATTTCCAATGGAAACACAGG s panTro1.chr19 42713091 50 - 82489036 ACCCCCCACTAATGAAGAAATATGACAAGCATTTCCAATGGAAACACAGG s mm5.chr11 22349266 48 - 121648857 ACCCACTATGGA--AAAAAATGCGAACAGTGTTTCAGTTGCAAACACAGG s rn3.chr10 22133804 38 - 110733352 ----------GA--AAAAAATGCAAGCAGTGTTTTAGTTGCAAATACAGG a score=65329.0 s hg17.chr17_random 2441763 173 + 2618010 AGCACAGCAGGAAAAGGAAATGGGTTATTTTCTCT--GTTTTGGAGTATTTAACTGG--AAAC---ACAATGAT--GTAATTACATGATTAATT-TTTCC-AGTAGGTAAATAATAACAAGGAAATAATGA-TGTGGTGGCAATGGGCCTTCAGGAGGGTAT-AAAGGGACTACAGGCC-CAGGAGA s panTro1.chr19 42713141 175 - 82489036 AGCACAGCAGGAAAAGGAAATGGGTTATTTTCTCT--GTTTTGGAGTATTTAACTGG--AAAC---ACAATTAT--GTAATTATATGATTAATT-TTTCC-AGTAGGTAAATAATAACAAGGAAATAATGACTATTGTGACAATGGGCCTTCAGGAGGGTAT-AAAGGGACTACAGGCCTCAGGAGA s mm5.chr11 22349314 177 - 121648857 AGC-CATCAGGAAAAAGAAATGTCATGTTTTCTTT--CTTTTGGAGTATTTAACTAG--AAACATTACAATTAT--GTAATTAAATAATTAACT-TTTCCAAGAAGGAAAATACTAACAAGGAAATAATGA-TGTAGTCATATGAGGTGTTCAGCGAGGTATAAAAGGGGGCGTGGGGC-AAGGAGA s rn3.chr10 22133842 176 - 110733352 AC--TATCAGGAAAAGAAAATGTCATGCTTTCTTT--CTATTGGAGTATTTAACTAG--AAACATTACAATTAT--GTAATTAAATGATTACGT-TTTCCAAGAAGGTAAATACTAGCAAGGAAATAATGA-CGTAGTCATATGAGGTGCTCAGTGGGGTATAAAAGGGGGTGTGGGGC-AAGGAGA s canFam1.chr9 14253856 171 + 53642819 AACACTGCAGAAAAGGGTAA-ATTATGCTTTACTTAGATATTGGCATATTTAACCTGATAAAC---ACGATTATTAGTAAC------ACTAATTGTTTCCTGGTAGGAAA--AACAACAAG--AATGTTGCTCATAGTAACATCAACTACTCAGCAGAGTATAAAAGGGGACAGAGGT--AAGGAAA a score=32070.0 s hg17.chr17_random 2441936 70 + 2618010 CTTCCAAACA--CAAGAACTTCACTCTCCTAGAAACCCAACTAGATC----------------CTTCACCCTCTGACA---CCATGGTAAA-------------- s panTro1.chr19 42713316 70 - 82489036 CTTCCAAACA--CAAGAACTTCACTCTCCTAGAAACCCAACTAGATC----------------CTTCACCCTCTGACA---CCATGGTCAA-------------- s mm5.chr11 22349491 69 - 121648857 CTTCCAAACC--CAACATCTTCACTCTCTCAGAAACCCACCCAGAAT----------------CTCCA-CCTCTGACA---CAATGGTCAA-------------- s rn3.chr10 22134018 69 - 110733352 CTTCCAAACC--CAATACCTTCACTCTCTCATAAATCCACCCAGAAC----------------CTCCA-CCTCTGACA---CCATGGTCAA-------------- s canFam1.chr9 14254027 85 + 53642819 CATTCAAAGT--CAAGAAA-CCACCCTAGTGGAAACCCACTCAAATCCACCTGTGGAACCCAACTCCTTTCACTGACA---CCATGGTCAA-------------- s danRer1.chrUn 236498431 87 + 367113659 CCTCCAAAGCTGCCAGATCTTCAGTCACCTCCAGAGCTG-CCAGATC----------------CTCAT-TCACTGCCAGAGCCATGGTTGCCAGTGCTACCAGAG a score=3785.0 s hg17.chr17_random 2442006 3 + 2618010 CTC s panTro1.chr19 42713386 3 - 82489036 CTC s mm5.chr11 22349560 3 - 121648857 CTC s rn3.chr10 22134087 3 - 110733352 CTC s canFam1.chr9 14254112 3 + 53642819 CTC s fr1.chrUn 303307883 3 + 349519338 CTA s danRer1.chrUn 236498518 3 + 367113659 CTG a score=93850.0 s hg17.chr17_random 2442009 141 + 2618010 CTGTTGTGGCTCCGTGTGCTCTCACCAAGGCTGTGGCCAAGACCTCTGC--------------------------------------------CAGGAGAC-------------------CTGCTGCCGCCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACCTACTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAG s panTro1.chr19 42713389 141 - 82489036 CTGTTGTGGCTCCGTGTGCTCTCACCAAGGCTGTGGCCAAGACCTCTGC--------------------------------------------CAGGAGAC-------------------CTGCTGCCACCCCAGCTGCTGTGAGACCACCTGCTGCAGGACCACCTGCTGTCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAG s mm5.chr11 22349563 126 - 121648857 TTGTTGTGGCTCTGTCTGCTCTGAGGAGAGCTGTGGCCAAGG------------------------------------------------------------------------------CTGCTGCCAGCCCAGCTGCTGCCAGACCACCTGCTGTAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAG s rn3.chr10 22134090 126 - 110733352 TTGTTGCGGCTCTGTCTGCTCTGAGGAGGGATGCGGCCAAGG------------------------------------------------------------------------------CTGCTGCCAGCCCAGCTGCTGTCAGACCACCTGCTGTAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAG s canFam1.chr9 14254115 204 + 53642819 CTGTTGTGGCTCCGTCTGCTCTGACCAGAGCTGTGGCCAAGAGACCTGCTGCCGTCCCACATGCTGTGGTTCCAGCGGCTGTGGCTCCAGCTGCTGCAGGCCCAGCTGCTGCATCTCTAgctgctgccgcccctcctgctgccagaccacctgctgcaggaccacctgctgccgccccagctgctgtgtgtccagctgctgccg s fr1.chrUn 303307634 123 + 349519338 CTGCTGTAGCTGCTGCTGATGTAGCTGCTGCTGCTGCTG------------------------------------------------------CTGTAG---------------------CTGCTACTACTGCTGCTGCTGCTA------CTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTGTAG s danRer1.chrUn 236498521 135 + 367113659 CTGTCATCAGTGC---TGCCACCACCAGAGCTGTTGCCAGAACCATTGC--------------------------------------------TGGCAGAG-------------------CCGCTGCCGCCCGAGCTCCCTGAATGGCCGCCGCTTGAGCTCCTTATATGGCCGCCGCCTGAGCTTTCTGAATTTCTGCCA--- a score=6532.0 s hg17.chr17_random 2442150 7 + 2618010 GCCCCAG s panTro1.chr19 42713650 7 - 82489036 GCCCCAG s mm5.chr11 22349734 7 - 121648857 GCCCCAG s rn3.chr10 22134246 7 - 110733352 GCCCCAG s canFam1.chr9 14254348 7 + 53642819 gctccag s danRer1.chrUn 236498656 7 + 367113659 CCGCCTG a score=58408.0 s hg17.chr17_random 2442157 80 + 2618010 TGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGATGCTGCATCTCCAGCTGCTGTCGCC---------------CCAGC-TGCTG s panTro1.chr19 42713657 81 - 82489036 TGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGATGCTGCATCTCCAGCTGCTGTCGCC---------------CCAGCCTGCTG s mm5.chr11 22349741 80 - 121648857 TGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGTTGCTGCATTTCCAGCTGCTGTCGAC---------------CTTCC-TGTGG s rn3.chr10 22134253 65 - 110733352 TGTTGTCAGTCTGTGTGCTGCCAGCCTACATGCTGCCGCC---------------CCAGCTGCTGCCGCC---------------CCAGC-TGCTG s canFam1.chr9 14254401 95 + 53642819 tgctgcCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCCGCCCCTCCTGCTCTAGTTCCAgc-tgctg s fr1.chrUn 303307764 80 + 349519338 TGCTACTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTACTACTGCTGCTGCTGCTGTA---------------GCTGC-TGCTG s danRer1.chrUn 146354980 72 - 367113659 TGCTGCCTGTTTGAGTCCCGACTGCTGTACTGAAGACTCTCCTGCTGCTGC--------CTGTTTGAGTC---------------CCGAC-TGCAG a score=-8071.0 s hg17.chr17_random 2442237 56 + 2618010 ---TG-----TGTCCAGCTGCTGCAAGCC--------------CCAG----------------TGCTGCCAGTCTA-TGTGCTGCCAGCCCACTt s panTro1.chr19 42713738 56 - 82489036 ---TG-----TGTCCAGCTGCTGCAAGCC--------------CCAG----------------TGCTGCCAGTCTG-TGTGCTGCCAGCCCACct s mm5.chr11 22349821 26 - 121648857 ---TA-----GCTCCAGCTGC--------------------------------------------------------TGTGGTTCTAGC-----T s rn3.chr10 22134318 11 - 110733352 ---TG-----TGTCCAGC----------------------------------------------------------------------------T s canFam1.chr9 14254496 86 + 53642819 ---tg-----gctccagctgctgcaggcccagctgctgcatctctagctgctgccgccccacctgctgccagacca-cctgctgcaggaccacct s danRer1.chrUn 146355052 61 - 367113659 TATTGAGGACTATCCTGCTGTGGCCAGTT----------------------------------TGAGTCCCGTCTGCTGTACTGAGGACTCTCCT a score=34787.0 s hg17.chr17_random 2442293 84 + 2618010 gctgccgccccagatgctgcatctccagctgctgtcgccc---------------cagctgctgtgtgtccagctgctgcagaccccagtgctgccagt s panTro1.chr19 42713794 84 - 82489036 gctgccgccctagctgctgcatctccagctgctgtcgccc---------------cagctgctgtgtgtccagctgctgcagaccccagtgctgccagt s mm5.chr11 22349847 45 - 121648857 GCTGCCGCCC------------------CTGCTGCCGCCC---------------------------------CTGCTGCAGCCCTTGCTGCAGCC--- s rn3.chr10 22134329 84 - 110733352 GTTGCAGGCCCAGCTGCTGTGTGTCCAGCTGTTGCAGGCC---------------CAGCTGCTGTGTGTCCAGCTGTTGCAGGCCCCAGTGTTGTCAGT s canFam1.chr9 14254582 99 + 53642819 gctgccgccccagctgctgtgtgtccagctgctgccgcccctcctgctccagttccagctgctgtggctccagctgctgcaggcccagctgctgcatct a score=39222.0 s hg17.chr17_random 2442377 100 + 2618010 ctgtgtgctgccagcccacctgctgc---------------caccccagctgcagcatctccagctgctgccgcccc-tcttgctgtgaatcc---------------agctgctgccgcccc------------------------tgctgctg s panTro1.chr19 42713878 101 - 82489036 ctgtgtgctgccagcccacctgctgc---------------caccccagctgcagcatctccagctgctgccgccccctcttgctgtgaatcc---------------agctgctgccgcccc------------------------tgctgctg s mm5.chr11 22349892 58 - 121648857 ------------------CCTGCTGC---------------CGCCCCTGCTGCCG----TCC--CTGCTGCCGCCCC----------------------------------TGTTGCCGCCCC------------------------TGTTGCTG s rn3.chr10 22134413 139 - 110733352 CTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGCTGTTGTCGCCCCAGCTGCTGCATCTCCAGCTGCTGCCAACCC-TCCTGTGGTGGTTCC---------------AGCTGCTGCCGCCCCTGCTGTCGGCCCTGCTGTCGCCCTTGCTGCTG s canFam1.chr9 14266441 127 + 53642819 ccagctgctgtggctccagctgctgc---------------aggcccagctgctgcatctctagctgctgccgcccc-tcctgctgtggctccagctcctgtggctctagctgctgccgcccctcctgctgcccc------------tcctgctg a score=44085.0 s hg17.chr17_random 2442477 63 + 2618010 CCTGCGTCCAGTCTGTGGCG---GAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCAT s panTro1.chr19 42713979 63 - 82489036 CCTGCGTCCAGTCTGTGGCC---GAGTCTCCTGCCACACCACTTGCTATCGCCCAACCTGTGTCAT s mm5.chr11 22349950 63 - 121648857 TCTGAGACCAGTCTGTGGTC---AGGTCTGCTGCCAAACCACTTGCTACCGCCCCACCTGTGTCAT s rn3.chr10 22134552 63 - 110733352 TCTGAGACCAGTCTGTGGTC---AGGTTGGCTGCCAAAGCACTTGCTACCGCCCCACCTGTGTCAT s canFam1.chr9 14266568 63 + 53642819 ccTGCGCCCAGTCTGTGGCC---GGGTCTCCTGCCACACTACCTGCTATCGCCCCACCTGTGTCAT s danRer1.chrUn 236498803 63 + 367113659 CCTGA---CTGGCCGTTGCCTCATGATCCCGAGCCACTTCAGTTCCTTGATCCAGAGCCATTTCAG a score=34568.0 s hg17.chr17_random 2442540 41 + 2618010 CTCCA---------GCTGCCCCCGCCCCTTGTGCTGTGCC---TCCTCTTGCT s panTro1.chr19 42714042 41 - 82489036 CTCCA---------CCTGCCCCCGCCCCATGTGCTGCGCC---TCCTCTTGCT s mm5.chr11 22350013 44 - 121648857 CTCCA---------CCTGCCCCCGCCCCATGTGCTGTGCCACACCCTGCTGCT s rn3.chr10 22134615 41 - 110733352 CTCCA---------CCTGCCCCCGCCCCATGTGCTGTGCC---ACCCCCTGCT s canFam1.chr9 14266631 41 + 53642819 CTCCA---------CCTGCCCCCGCCCCATGTGCTGTGCC---TCCTCTTCCT s fr1.chrUn 303307844 41 + 349519338 CTACT---------GCTGTAGCTGCTGCTGCTGCTGTAGC---TGCTGCTGCT s danRer1.chrUn 236498866 50 + 367113659 CTCCATGATCCAGGGCCACTGCAGCTCCATGATCCAGGGC---CACTGCAGCT a score=506.0 s hg17.chr17_random 2442581 50 + 2618010 GCTGAGCCCACTGCCCT--GGCTCA-TCTCTCCCT--TCACTGCAGGC-CCACAGT s panTro1.chr19 42714083 50 - 82489036 GCTGAGCCCACTGCCCT--GGCTCA-TCTCTCCCT--TCACTGCAGGC-CCACAGT s mm5.chr11 22350057 38 - 121648857 GCTGAGATCCCTAATCTA-GGCACA-TCTCCACGT----------------ACAGA s rn3.chr10 22134656 38 - 110733352 GCTGAGTTCCCTGCTGTA-GACTCA-TCTCCTCTT----------------ACAAA s canFam1.chr9 14266672 53 + 53642819 GCTGAGCCCCCTGTCCTGTGACCCACTATTTCCAT--TTACCTCTGCC-CCACAGA s fr1.chrUn 303308269 50 + 349519338 GCTGCTGCTACTGCTGT--AGCTGC-TGCTGCTGT---AGCTGCTGCTGCTGCTGC s danRer1.chrUn 236498922 49 + 367113659 TCCAGGGCCACTGC-----AGCTCC-ACTCACCAGGCCTTCTGCAGCT-CCACGAT a score=49704.0 s hg17.chr17_random 2442631 160 + 2618010 TGTAGACCATTCTTCTGTGCTGACTATTAGGACACATGGAGTGGGATTGATGTCATTCAGCAGGGTGGACTTCATGTTTCCAATGAGC---------------------------CCATCACCATC--CCACTGACTCTGTGAGAACATTCTGGTTCATTTTAAACTCCCTCCCTTGCTTTCTTTCTCT s panTro1.chr19 42714133 158 - 82489036 TGTAGACCATTCTTCTGTGCTGAATATTAGGACACATGGAGTGGGATTGATGTCATTCAGCAGGTTGGATTTCATGTTTCCAATGAGC---------------------------CCATCACCATC--CCGCTGACT--GTGAGAACATTCTGGTTCATTTTAAACTCCCTCCCTTGCTTTCTTTCTCT s mm5.chr11 22350095 158 - 121648857 TATGTACCATTCTTGCATGTGAACCCGTAGGACACGTGGAATCTGTTTGGCATCATTTAGCAGGATGGACCACACAATTCTTGTGAGC-------------------------------CACCATCTTCCGCAGAATCAGTCAACACCTCCTGGCTCACATTACATTCTCTTGTTTGCTACCATGTCTT s rn3.chr10 22134694 159 - 110733352 TGTGTACCATTCTAGCGTGTGAAGCCACAGATCACATGGAATGTGTTCTACATCATTTAGCAGGATGGACCATAAAGTTCCAGTGAGC---------------------------C---CACCATCCTCCCCAAAGTCAGTCAACACCCCCTGGCTCACTTTACATTCTCTTGTTTGCTACCATGTCTT s canFam1.chr9 14266725 155 + 53642819 TAAAGACCCTTCTTTTGCGCTGAGTGTTAGGACACATGGAGTCTGGTTAACATCATTGAACA-GTTGAGCCTCATGATTCCAGGGATC---------------------------CCACCACCATC--CCATTGACTCAGT----ACATTCTGGTTTATGTTAAGCTCCTTCCATTATTATCTTTTCCT s fr1.chrUn 303308319 165 + 349519338 TGTAGCTGCTGCTGCTGTAGCTGCTGTT------------------TTGATG----TGGGCTGTGCTTACTGCTCTGTGCTAATGTGCAGCTCGGAGCTCAATCACGCCACCTCGCTAACATCCTC--CTGTGGGCTCTGTGTCGTTGATCCTCGTGACCTTTAACCCCCTGTCTCACATTCATTCCCT a score=43753.0 s hg17.chr17_random 2442791 136 + 2618010 TCCAGTCATGGCACCAAATATG--AAATAATTTGTAATCCACTAGCTAAGAAATTATTCCAATCCTCTAAATTCCTCATT-TTTTAAATCG-TTTTGAGCCTACAGAATATCCTTCCCAGTGAGGTACACATTATCTCCA s panTro1.chr19 42714291 136 - 82489036 TCCAGTCATGGCACCAAATATG--AAATAATTTGTAATCCACTAGCTAAGAAATTATTCCAATCCTCTAAATTCCTCATT-TTTTAAATTG-TTTTGAGCCTACAGAATATCCTTCCCAGTGAGGTACACATTATCGCCC s mm5.chr11 22350253 125 - 121648857 TCTAATGTTTGCACTGTGCTGA--AATTAATCTCTAAGTTGTGAGCTAAGAATTCATCCTAGTTCTCCAAA-------------TGGATTGACTTTGTAGCTCTAAATTATTCTTCCCAGTAAATAAGACACTTTCTACA s rn3.chr10 22134853 125 - 110733352 TCTAATATTGGTACTGTGCTGA--AATTAATCTCTAAGTTATGACCTAAGAATTTACCCCAAGTCACCAAA-------------TTGATTGGCCTCGTAGCTCTAAATTATTCTTCCTAGTAAATCAGACATTTTCTACA s canFam1.chr9 14266880 136 + 53642819 TTCAGTATTGGCACCAAATATGTATATTAATTTGTAACCTATCAGCTAAAAAATTATCCCATTCCTCTAAATTTGTCATTCTTCCTTATCA-CTTTGGGGCTCTAGATTATCCTTCCTAACAAAATG---ATTATCTGCA a score=447.0 s hg17.chr17_random 2442927 4 + 2618010 TTTC s panTro1.chr19 42714427 4 - 82489036 TTTC s canFam1.chr9 14267016 4 + 53642819 ACTC a score=7895.0 s hg17.chr17_random 2442931 83 + 2618010 AAACATATTATTTGTCTGTCAGCCTTTCAGTCATTCTTTTCTCTTGGAAAGGTAGGAGGCTGCCCCTCCCATGCTCTCCTGCT s panTro1.chr19 42714431 83 - 82489036 AAACATATTATTTGTCTGTCAGCCTTTCAGTCATTCTTTTCTCTTGGAAAGGTAGGAGGCTGCCCCTCCCATGCTCTCCTGCT a score=33591.0 s hg17.chr17_random 2443014 250 + 2618010 TTCTCCCTGTTCTCTCTTTGTCTCTGTTTGTTCAAGTTTGCCAGAATTTTTCTATTTTATTGGTTCT-------------------------------------TTATCTTTATTGTGTTCACAAAATATATTGTATTAAACTTTTCATTTAGAAATCTTTTATTGTTTTTTGCATTTTTTTGTGATAATTTTCACTGAGTTTACTGATTCATGGGGGTGAGGTGGGAATGCAGTAGAAG--GGGATTCTC--AAAGCATGATTCCAAAGTAAGACTTCAAGGATGAACTC s panTro1.chr19 42714514 250 - 82489036 TTCTCCCTGTTCTCTCTTTGTCTCTGTTTGTTCAAGTTTGCCAGAATTTTTCTATTTTATTAGTTCT-------------------------------------TTATCTTTATTGTGTTCACAAAATATATTGTATTAAACTTTTCATTTAGAAATCTTTAATTGTTTTTTGCATTTTTTTGGGATAATTTTCACTGAGTTTACTGATTCATGGGGGTGAGGTGGGAATGCTGTAGAAG--GGGATTCTC--AAAGCATGATTCCAAAGTAAGACTTCAGGGATGAACTC s canFam1.chr9 39374099 264 - 53642819 TTCTTCTTTTTCTCTC----TCTCTCTTTGATTAGTTTTACGAGA--CTTTCTATTTCATTAGTTTTTAAATCTTTGTTTATATAATTGCTTTTATTAAACTTCTTGTTTTTATTGTATTTATGTA----ATTTTGTTAAGATTTTCACTTAAAAATATGTTATTAATGTTTAAA-TCTGTCATTATAACTTT-------TCTA------CATAGGGTTTA--TGGGAATGTAATAGAAGGAGGGATTTCCCAAAAGTGTGATTCCAAAGCATAGCTTCAAGAA-gaaccc a score=607457.0 s hg17.chr17_random 2443264 6699 + 2618010 ATAGTGCCAAACTGCTCCAATGTCACGCATAAACTAAAATAAAATAGAAGCTTTTGATTGTTTCAATTTGATATATGGAATGCTTTGGGATAGGTAAAGCCCCAGTATTGTTGTTTGTAAGTTCATCCATGATTTTAGAACTTATGATATCATGGTAATACTCCTCACTCTTCTGTGTCAAATTTAAAAGGCACATCTCATCCTACTGCATTCCATCTTGATTCAAATCAGTTAAGGCAGACTCCAAATGTTATATAAGGGAATTTTGTTATTTtgttgtcggtggaccagttcaggttcttgaatttgctgtgcaaaagaatttgagagcaaatccaaagtaagagtaagcgaagaaatttgttgcaaagcaaaagtactctttgagaggcagagtggggtgctcagtgggagagacagcagctagtgctgtaaga-ggaattccttttat-gggagctatacgtacataatcataaaata-ctggtgaggtcaagtatgcaaaggcagacctgcggttggcacatgtgctcaggatccacgtggtctaacacccatcgcatgtatcattagcatatgaaatctccgccttggggtgtttttcttgttgtggttgtttttactattaaaatgagGAAATGGTTACTATAAGCTGAACCTTGATCCTAGCTGTGCATGCAGGACCCCAGAGAAGTCCCTGCCCACCCTCCCAAACACCCCACCCCAGGAAGGAATTTGTAGTTAGGAGTTTCTTGGGCTTTTGGTGCAAATTGGCTAGAGATTGGGGAAGCTGCATCAGGAATAAAGGGCTTTTGCTCTCTTTCCCAGGTTGTACTAGGTATCAGGAACTTGTAACCCTCTGGTGGGTCTGCTTCGATTCTGTAGGACCCCTTATCTTGTGAAAGAGTTAGGCACTGATGCACAAAGGTTCAAGTGAAAAGAGCTTGCTGTGAAAGGATCCTGCTGGGCTTCACACAGGGGACAAGTCAGTATGGCCTtgtgaacccccaaaatcggagacaggtctcagtttatttagaaagtttattttgccaaggttggggatgtacacctgtgacacagcctcaggaggttctgaagacatgtgcccaaagtggtcagagcacagcttggttttatacattttagggagacatgagacatcaatcaacatatgtaagatgaacagtggttccgtccggaaaaggcgggacaagtctaagcggggaggggcttccaggtcataggtagataagagacaaatggttgctttctttagagtttctgattagcctttccaaaggaggcaatcagatatgcatttaactcagtgagcagaggggtgactgtgaatagaatgggaggcaggtttgccctaagcagttcccagcttgactttcccctttaccttagtgatttcagggccccaaggtttattttcctttcaAATttccccccttttcttaaaaatctttttgagaaagcctttttgaagaaagtcagtctttggtctcaagtttcatctgatatctcatggctaggattgtttattcctagaaagataattcctgagttattaggaaagttcatttttagcaggttgtgaagtttcatgtcctatgaagagaaaatagggggaggaagggagaaaaacaaaaataaacaaaagaacaatcctggaaaatcaatatgggccacattactctgaagtccatacatcagtaggcaggtatgaaagtggcttatgtatgtaaacaggttgctggtattttcttctgaagtttaaattctctagctccagttcgcagggcttttacaaaagcacagatgagttttcagtgactccaaattaggaaaaatgggggaaagaagaagaaaaaaaaactgaaaacaatcttttgaagacctgtagccaagaaaaattagaattcagtcgaaactgtagaaaataataaaaatgtgaaaacattaggcaagactagaatctaacaacaggtgtattatcattttttgaaacataattcttctctctcccatttcccatttttactaaagacaaatcatggcagggctgattttctttattatacttgacctgattatttgtatacagcgcagccatagtaatactttttttttgcataagcttttaaattgcctttgatggaactgaagcaggatgtttccctgacccctttgtgggacttgtgacgggtgcctcgtttattcagcctgccactctcaactccttgcaggagcgagcatgcaagcaaatgaggcaggaactggagtgcac-tgtgctggaatcggcactgcagcacggtaggatcaaacttcactcactgggacctgctgcagtcccctgcttgtgggaggaagcatgcaggtgaatcagtgcaggagccaaagtgagtgcttttggccaccggcaggagcaaactctgtgtgggccccacagcagcatctaggtgggggtgcctgcgacccccatagccccagagggcatgttacagtgttcttttaactctgccttccatggatggcttaagtgtcaacagctcagtgaggcctctgcctttttgtgtgaggcagctgccctccaccagcaagggcagagggccagtgtgacagtcttttgtatctgctctcctggctcccaagctcttgtcttgtgtccaggaaaagtgaggtcacatgaaccaatcaaaggatggtaaatgtgggggattttgttgctgatgaaagtggctcttagcagaaaggggagctgaaaaaggatggggtgggtaggtaatcttcctcaaagttaggctgtatccagctggattcttctccaagattacaccatcaagctgtccctctg-aatcaagctgcttctctctgacgtccagctgtagttcccaatgtccagctgcttcttgcctctgccagctgagtctggcatcttcacaggcataggat-ggacaggatggagccatgagtggtttagaaaaaggcaactttcaagcaggaaaacagggatataagttctcactttgggccgtggtttaaggcttttcagcttgaaggtggggttttgtcagagacctacccttttctgcctagaatttctcagccccctgtctctatcagaactttgttccatagaaggaatttcggataagacttttggaaagcttagcctagccatggatttgtaccatcaaatacctatgagttgcatgaattcctctgctcttgaggttccaagataaacttggggctcctggaactgttagaaagtgacatgctttacttaccacaggtcaggaaccctgtacagggactgtgtagataaggtatgaggccagttctcccaaggggcttttattggctccataagtcaaatttgattccttaaaggagagcacaccattccagtcaaagccttggtaaaatgaccaatttctccaattgtgtcttgttacacatgaaaacagattattattgcacttatgcaaataactgtattgccataagttaagaatactcaca-gatagtttccaattctggggaaaatcaggtagagagaaacaaatatgctccaaatatttttcacaggagtatactaacttgttaaaagctgacaacagctcaaataaaagtttccttgactaaaaaaaggaaaacaaggagcagcaacattttaagcaaaaagtcaaaaagattacgttgctcttctattagttcagttcatgcagttaattcctgttctgcttgctattcatgaacatttcaggtctccatgagttctgaaagcttttcctccattctgatgtcacagtctccaaagttattagaaacttgccttcaagaacacgtgttagagttttat-agctgattataaaaccatcttctaaaaaggactaaaacaaaacaattgt-ccatgggtgacaaaaagttttaggtcagccataatcaaagacacaattgacaagaaaatttgttaccactgtggcacacgataattttatataacaattataattattagtgatattgtacaccatgtcatatcagaattataggagtttcccataattttggtgcacataccaataacatttttatacaaatacagcccaaagaaaaccaaacaccattttatatttgacaatgcttcctgtataatttttataccaaataagtcatttatttcatttttggactttagggaaactaatatcttagaggattaattaggtcagaaaaatacacaacttgtaatttgattctggaaactttgccaaatatcaaaagtttaaaatacttgat-----aggtcatcataaaataagtcaatttttcaaacattaagcccaaataaaacagcataaagccaattaaatttgttttttgaaattttattatcaatctttaaaattttaatcttgaccataagatacagcttccataagccttttttaacctttataacctttattaaggggtcggttaacacttcaagaaaacctttttaatctgatgcaggggcccgtatgctggtattgcatcagtgtgcctttgacatcaattattaacttgcagagaaactgaacttattttgtctctcaaaatcagcccttacaatctcacatgcctacctcttctgtggtagttcctgagccttgaggagttgaatagcttttacttctggccttatgtctcaggaatgcagtttattttgattggcatcttctaccaggcctgaagatgaggttttaattgctgtcagtgcttaagatttagcagaccttggtgtccttgttagacccaggagtcaaaggcctgtaacttaatgtcacaggtactttcaaagcacctacagaaatatacatggatgtaataaccttaattttaaaaaattatctcagatactttttcctgagcaaatcaaaaattaataataacagcataacattgtttcaataagccataaaatctgttaggtcaattacccaaaggcaaaagaaaagaccttctacactgcacagaatattactttggaagaaaacattttctttagacttttagaaaacattgttagcatcagaccataacaaatagaatttaaggaaaataacttatatgagctgcaaacgagttgaaggggagagaaaacagcgagtaaacagttgaactttgggttaaaaaaattaaaatctcttataatttaataagagtaaatcaatcccttaagaaaatttcatcgctctaactattttgtttatcagtgcttttttttttttacatgaagcccaatcttcaggaagactattataatttccttttaattacagacaacttgaccatataaaagtttgttggttttttttttaatcctcttattatgacttttacagactgttcatgatatgcttggactttctggtttgttttgaacatccatctttcttaaacaatcattttattttaggtctaaatttaccatacaagatcttttctcatatgaaattatttctctttaagcttccttaccaaaaagaaccctctttatcctctttatttttatacctttctttacatctctctgatttcctggttccttttaacttgtcttatacataatctttaaataagcattgaattagatgacaattgttcacctttttaaaaaggaattgtttacctagattatttatgaaaactgcaatagtcatcatttaaagttatggaactgccattgcaaaattataactgagacagtgaaaaagatctgacctaattgactccatcttgcttctaacctccaaactgttcttgttcaatcctgggcacaggctgaacagacgttgagaggaacatagtttatagtttacctttgaaacaaagattataacagttcattctcaaactaaatcttactgcctgtggactagaccaccaaaaccacaaaattagaagttacagtaatctcactaaattcaagatgtgactatttttattaaaccaatatcaatgtcttatttattaaagattatacaagcaaagatcattctattacagttttgtaactccatggcaaattttgacaccttatggtatttgacagggataagcatgaaattgcttgattaataaatgcaaacaaaaatgcatgctggcaatttttaagacatgtctaatattactttaccaataattttaaagctagcttatttattaaagattttacttgttacataaacttcagaaagcattcaactagtcttttcttttttcctgataaagtattagattcaagtgctttttatcttaagccaattaattagaactcttttatatattttcagtagcgagaaattgtgtacacatcacataaatatatagacatagtaggcatgctgatagaagtacatcgtatagatacttaaggagcttttttcccctatcttaggctttcaaattcttaataacctgttttactcccctagggagttgtcagctaaatagccttaagtttgcatgttaaaggaaacaactcaggcaaaaatcaaatagcaaaattatatcataaggtacagagagaaaaagtctggtggtgctagagggaagtcaaaatggatttaattgccaattaaacataaaattataaaaatTATAAAGGCCTTTTAAATAGATacacacacacacacacacacacacac s panTro1.chr19 42714764 6707 - 82489036 ATAGTGCCAAACTGCTCCAATGTCATGCATAAACTAAAATAAAATAGAAGCTTTTGATTGTTTCAATTTGATATATGGAATGCTTTGGGATAGGTAAAGCCCCAGTATTGTTGTTTGCAAGTTCATCCATGATTTTAGAACTTACGATATCATGGTAATACTCCTCACTCTTCTGTGTCAAATTTAAATGGCACATCTCATCCTACTGCATTCCATCTTGATTCAAATCAGTTAAGGCAGACTCCGAAAGTTATATAAGGGAATTTGGTTATTTtgttgttggtggaccagttcaggttcttgaatttgctgtgcaaaagaatttgagagcaaatccaaagtaagagtaagcgaagaaatttgttgcaaagcaaaagtactctttgagaggcagagtgggctgctcagtgggagagacagcagctagtgctgtaagagggaattccttttatggggagctatacatacataatcataaaatacctggtgaggtcaagtatgcaaaggcagacctgcggttggcacacgtgctcaggatccacatggtgtaacacccatcgcatgtatcattagcatatgaaatctccgcctaggggtgtttttcttgttgtggctgtttttactattaaaatgaggaaaagtTTACTATAAGCTGAACCTTGAGCCTAGCTGTGCATGCAGGACCCCAGAGAAGTCCCTGCCCACCCTCCCAAACACCCCACCCCAGGAAGGAATTTGTAATTAGGAGTTTCTTGGGCTTTTGGTGCAAATTGGCTAGAGATTGGGGAAGCTACATCAGGAATAAAGGGCTTTTGCTCTCTTTCCGAGGTTGTACTAGGTATCAGGAACTTGTAACCCTCTGGTGGGTCTGCTTCTATTCTGTAGGACCCCTTATCTTGTGAAAGAGTTAGGCACTGACGCACAGAGGTTCAACTGAAAAGAGCTTGCTGTGAAAGGCTCCTGCTGGGCTTCACACAGGGGACAAGTCAGTATGGCCTtgtgaacccccaaaatcggagacaggtctcagttaatttagaaagtttattttgccaaggttggggatgtacacctgtgacacagcctcaggaggttctgaagacatgtgcccaaagtggtcagagcacagcttggttttatacattttagggagacatgagacatcaatcaacatatgtaagatgaacagtggttccgtccggaaaaggcgggacaactctaagcggggaggggcttccaggtcataggtagataagagacaaatggttgctttctttagagtttctgattagcctttccaaaggaggcaatcagatatgcatttaattcagtgagcagaggggtgactgtgaatagaatgggaggcaggtttgccctaagcagttcccagcttgactttcccctttaccttagtgatttcagggccccaaggtttattttcctttcaAATttccccccttttcttaaaaa-ccttttgggaacgactttttgaagaaagtccatctttggtctcaagtttcatctgatatctcatggctaggattgtttattcctagacagataattcctgagttattaggaaagttcatttttagcaggttgcgaagtttcatgtcctatgaagagaaaatagggggaggaagggagaaaaacaaaaataaacaaaagaacaatcctggaaaatcaatatgggccacaatactctgaagtccatacatcagtaggcaggtatgaaagtggcttatgtatgtaaacaggttgctggtattttcttctgaagtttaaattctctagctccagttcgcagggc-tttacaaaagcacagatgagttttcagtgactccaaattaggaaaaatgggggaaagaagaag--aaaaaaactgaaaacaatcttttgaagacctgtagccaagaaaaattagaattcagtcgaaactgtagaaaataatagaaatggaaaaacattaggcaagactagaatctaacaacaggtgtattatcattttttgaaacataattcttctctctcccatttcccatttttactaaatacaaatcatggcagggctgattttctttattatacttgacctgattatttgtatacagcgcagccatagtaatac-ttttttttgcataagcttttaaattgcctttgatggaactgaagcaggatgtttccctgacccctttgtgggacttgtgacgggtgcctcgtttattcagcctgccactctcaactccttgcaggagcaagcatgcaagcaaatgaggcaggaactggagtgcacgtgtgctggaatcggcactgcagcacagtgggatcaaacttcactcactgggacctgctgcagtcccctgcttgtgggaggaagcatgcaggtgaatcagtgcaggagccaaagtgagtgcttttggccaccggcaggagcaaactctgtgtgggccccacagcagcatctaggtgggggtgcctgcgacccccatagccccagagggcatgttacagtgttcttttaactctgccttccatggatggcttaagtgtcaacagctcagtgaggcctctgcctttttgtgtgaggcagctaccctccaccagcaagggcagagggccagtgtgacagtcttttgtatctgctctcctggctcccaagctcttgtcttgtgtccaggaaaagtgaggtcacatgaaccaatcaaaggatggtaaatgtgggggattttgttgctgatgaaagtggctcttagcagaaaggggagctgaaaaaggatggggtgggtaggtaatcttcctcaaagttaggctgtatccagccggattcttctccaaggttacaccatcaagctgtccctctgcagtcaagctgcttctctctgatgtccagctgtagtccccaacatccagctgcttcttgcctctgccagctgagtctgagatcttcacaggcacaggatgggacaggatggggccatgagtggtttagaaaaaggcaactttcaaccaggaaaacagggatataagttctcacttcgggccgtggtttaaggcttttcagcttgaaggtggggttttgtcagagacctacccttttctgcctagaatttctcagccccctgtccctatcagaactttgttccatagaaggaatttcagataagacttttggaaagcttagcctagccatggatttgtaccattaaatacctatgagttgcatgaattcctctcctcttgaggttccaagataaacttggggctcctggaactgttagaaagtgacatgctttacttaccacaggtcaggaaccctgtacagggaccgtgtagataaggtatgaggccagttctcccaaggggcttttattggctccataagtcaagtttgattccttaaaggagagcacaccattccagtcaaagccttggtaaaatgaccaatttctccaattgtgtcttgttacacatgaaaacagattcttattgcacttatgcaaataactgtattgccataagttaagaatactcacaggatagtttccaattctggggaaaatcaggtagagagaaacaaatatgctccaaatatttttcacaggagtatactaacttgttaaaagctgacaacagctcaaataaaagtttccttgactgaaaaaaagagaacaaggagcagcaacattttaagcaaaaagtcgaaaagattacgttgctcttctattagttcagttcatgcagttaattcctgttctgcttgctattcatgaacatttcaggtctccatgagttctgaaagcttttcctccgttctgatgtcacaatctccaaagttattagaaacttgccttcaagaacgcgtgttagagttttatgagctgattataaaaccatcttctaaaaaggactaaaacaaaacaattgtaccatgggtgacagaaagttttaggtcagccatagtcgaagacacaattgacaagaaaatttgttaccactgtggcacacgataattttatataacagttataattattagtgatattgtacaccatatcatatcagaattataggagtttcccataattttggtgcacatatgaataacatttttatacaaatacagcccaaagaaaaccaagcaccattttatatttgacaatgcttcctgtataatttttataccaaataagtcatttatttcatttttggactttagggaaactaatatcttaaaggattaattaggtcagaaaaatacacaacttgtaatttgattctggaaactttgccaaatatcaaaagtttaaaatacttgatatgacaggtcatcataaaataagtcaatttttcaagcattaagcccaaataaaacagcatacagccaattaaatttgttttttgaaattttataaacaatctttaaaattttaatcttgaccataagatacagcttccacaagccttttttaacctttataacctttattaaggggtcggttaacacttcaagaaaacctttttaatctgacacaggggcccgtatgctggtattgcatcagtgtgcctttgacatcaattattaacttgtagagaaactgaacttattttgtctctcaaaatcagcccttacaatctcacatgcctacctcttctgtggtagttcctgagccttgaggagttgaatagcttttacttctggccttatgtctcaggaatgcagtttattttgattggcatcttctaccaggcctgaagatgaggttttaattgctgtcagtgcttaagatttagcagaccttggtgtcctttttagacccaggagtcaaaggcctgtaactcaatgtcacaggtactttcaaagcacctacagaaatatacatggatgtaataaccttaattttaaaaaattatctcagatactttttcctgagcaaatcaaaaattaataataacagcatagcattgtttcaataagccataaaatctgttaggtcaattacccaaaggcaaaagaaaagacattctacactgcacagaatgttactttggaagaaaacattttctttagacttttagaaaacattgttagcatcagaccataacaaatagaatttaaggaaaataacttatatgagctgcaaacgagttgaaggggagagaaaacagcgagtaaatagttgaactttgggttaaaaaaattaaaatctcttataatttattaagagtaaatcaatcccttaagaaaatttcatcgctctaactattttgtttatcagtgcttttttttttttacatgaagcccagtcttcaggaagactattataatttccctttaattatagacaacttgaccatataaaagtttgttgg-tttttttttaatcctcttattatgacttttacagattgttcatgatatgcttggactttctggtttgttttgaacatccatctttcttaaacaatcattttattttaggtctaaatttaccatacaagatcctttctcatatgaaattatttctctttaagcttccttaccaaaaagaaccctctttatcctctttatttttatacctttctttacatctctctgatttcctggttccttttaacttgtcttatacataatctttaaataagcattgaattagatgacaattgttcacctttttaaaaaggaattgtttacctagattatttatgaaaactgcaatagtcatcatttaaagttatggaactgccattgcaaaattgtaactgagacagtgaaaaagatctgacctaattgactccatcttgcttctaacctccaaactgttcttgttcaatcctgggcacaggctgaacagacgttgagaggaacatagtttatagtttacctttgaaacaaagattataacagttcattctcaaactaaatcttactgcctgtggactagaccaccaaaaccacaaaattagaagttacagtaatcttgctaaattcaagatgtgactatttttattaaaccaatatcaatgtcttgtttattaaagattatacaagcaaagatcattctattacagttttgtaactccatggcaaattttgacaccttatgatatttgacagggataagcatgaaattgcttgattaataaatgcaaacaaaaatgcatgctggcaatttttaagacatgtctaatattactttaccaataattttaaagctagcttatttattaaagattttacttgttacataaacttcagaaagcattcaactagtcttttcttttttcctgagaaagtattagattcaagtgctttttatcttaagccaattaattagaactcttttatatattttcagtagcaagacattgtgtacacattacataaatatatagacatagtaggcatgctgatagaagtacatcgtatagatacttaaggagcttttttcccctatctaaggctttcaaattcttaataacctgttttactcccctagggagttgtcagctaaatagccttaagtttgcatgttaaaggaaacaactcaggcaaaaatcaaatagcaaaattatatcataaggtacagagagaaaaagtctggtgatgctagagggaaatcaaaatggatttaattgccaattaaacattaaattataaaaatTATAAAGGCCTTTTAAATAGATacacacacacacacacacacacacac a score=48042.0 s hg17.chr17_random 2449980 601 + 2618010 tcctatagcttttacttcagaactttagccatgagacaaatacaaattcaccaggttgcaaacaaaaagcctgttgtatccaaacagtggttttgatcttaatagaaaaataacagcagatttaaagcaggcagaaaagaaaatagagaaaaaagagaacttaggaactctgtagtttgtaggttgaccttaaggctcttcttttctttctttttcttttctttctttctttctttctttctttctttctttctttctttctttctttcttttctttctttctttcttgcttgctttctttctttcttgcttgcttgctttcttgcttgcttgctttctttccttcttttctttctcttctaaaaaaaa--tgaaatacacatgcaggagaacgtgcaggtttgttacataggtatatgtgtgccttggtggtttgctgcacctattgacccatcctctaaattccctcctctcattccccaccccccaacagcccctgatatgtgttgctctcctctctgtgtccatgtgttctcaaagttcaactcccatatatgagtgagaacatgttgtatttggtattctgtttctgtgttagtttgc s panTro1.chr19 42737857 567 - 82489036 tcctatagcttttacttcagaactttagccatgagataaatacaaattcaccagcttgcaagcaaaaaaactgttgtatccaaacagtggttttgatcttaatagaaaaataacagcagatttaaagcaggcagaaaagaaaatagagaaaaaagagaacttaggaactctgtagtttgtaggtcgaccttaaggctcttcttttctttctttct---ttctttccttctttctttctttctttctttctttctttctttctttctttcttt---------------------ctttctttctttct----------ctttc--gctttcttgctttctttccttcttttctttctcttctAAAAAAAAAATGAAATatacatgcaggagaacgtgcaggtttgttacagaggtatatgtgtgccttggtggtttgctgcacctattgacccatcctctaagttccctcctctcattccccaccccctaacagcccctgatatgtgttgctctcctctctgtgtccatgtgttctcaaagttcaactcccatatgtgagtgagaacatgttgtatttggtattctgtttctgtgttagtttgc a score=229223.0 s hg17.chr17_random 2450581 2619 + 2618010 tgaggatgatggtttccagcttcatccatgtccctacaaaggacatgatctcact----ccgttttatggctgcatcgtattccatggtgtatatgt-accacattttct-ttatcaagtctataattgatgggcgtttgggttagttccatgtctttgctcttgtaaatagtgctgcaataaacatacatgtgcctgtgtctttatagtagaatgatttgtattcctttgggtatataacaagtaatgggattgctggatcaaatggtatttctgattctagatccttgaggaatcaccatactgtcttccacaatggttgaactaatttacatgggccctttctttcttaatgtaaatatgcacaaagaccatattacttccattttacttaaactctggcaagtacaggtgccataaaacctatggagtgcttgaaagggaatcattctctttgctttctcctcattcttagattatttgtttcccagttttcttcttaaaaagaggaactgagctgaggcttagaggttttctgtggtggatcaatatgtgccatttgtgggcaggactccacagtgggtcaccactgaaaacaacagttcagttcctcatgcaaatgcacacagacaagctgaattgagcttaatttggggagaaaaagcaacagagaagatcctttagaatgcatttgtgaactagaattaggatctttaaatgacaaattcctagaaggaaaacaaaacaacAGCCAAGACCACTTTTTGTAAACCTTGCTCAGCCACCCCTTAACTTTGTAGCTCTCATCTACCACTATACACAACAAGGTcaaagccaaagaggtcaggtcatgcaatacaggaaaatagaggtttagagttaagaagaatctacccatgactcttgaaactccacaaagaaaacaaaacaccccaaaaggggtgagtggcaacctttgttctgaattctttaagggggttcaagtcattagaagccttctctagactttttggtactgcatatggcaaagggggaggaggtatatggtgcaagaaaagtaaacgaaagaacaTTCGTGTTTTAAGACAGGAAGCAAACACAGAAACCAAGTGCATGGGTTTTTGGTTCTTTTTGTTTGTTTTCTTCttttgcagctgcaatgaattttagccaaattagagaggttttgttacccgtaattttgaattctcacttggatttgaccaagtcaggtagagttggtcaagtctgatgggagaaagaccaaaacaaacaacaaaatctccaaccataggattaccaagcactctaatgataaggagaaattaagagcagctagctggttgttaaactttagcccagacaaagccccagttcagctacttacctagggatgggtctcaggctgaaggctgctttctaccaccctagaagcaggaaaaaaactcaaactggtcttccctgctgggagtgagctcaaactctacatgcctttcatcatcatggaagcaggaaatcttgccttccttgtaaaggaagtaaaagtaaatcttgccttccttataaggaagtaaaagtaaatcttgccttccttataaggaaggcaagtaagcaagtaaaactccaaaaacaaaaataggtggggcagttgtacagcaaaatgaactttagttcttcaccaaatttggggagatcagggattctttggggagggtgctcccagacctcagcaaattgtcctattgatttgagccataaagttagctcatgctattaccaggcaccaacaggatattcgtcaaaggtcaagggcatctccactcagaatcctttcacagttaccaAAAtgttaacccagaaaatctgagacaggtctcagttaattgagaaagtttattttgctaaggttgaggatgctccggtgacacagcctcaggaagtcctgatgacatgtgtgtaaggtggtcagataacacttttgttttatacattttagggagacatgagatatcaatcaacatatgtaagatgaacacggatttggtccagaaaaggcaagacaactcgaagcaaaggcgggacaactcgaagctgggagggggcttccagatcataggtatataagagacaaatggttgccttcttttgagtttctgattagcctttcccaaggaggcaatcagatatgcatttatctcagtgagcagaggggtgactttgaatagaatgagaggcaagtttgtcctaagcagttccgagtttgccttttccctttagcttagtgatttggggaccccaatatttattttactttcacaGCCTCCTAACCTTATTTATCCTGCCTCATGTTTAAGAAGGCATCATAACTCTATGACTGAGATCTGGACAACATTTTTCTTAAGGCATCTGAAAAAATATGAAGCTTATTTTTCATATTTGAACATATCTGAACAAATCATCTTAAACTTGATTGGCTCAATAGCTTAAGGCCATTTCAGAGCTGATAATAGTCAAATAAAAGTAAAAACATCAAGAGCAGGTGCTCCTACTAGAATGCCAAGTTATAGTCACTTACCATATTCTTTCAGATTCAAATGAAGGCACCTCTCTTGGAAATTCTAATTA s panTro1.chr19 42721986 2580 - 82489036 tgaggatga-ggttttcagtttcatcctt-tccctacaa-ggaca-gatttcattaattc---tttatggctgcatcgtattccatggtgtatatgttacc-cattttctgttttcaagtctataattgatgggcgtttgggttatttccatgtctttgctcttgtaaatagtgctgcaataaacatacatgtgcctgtgtctttatagtagaatgatttgtattcctttgggtatataacaagtaatgggattactggatcaaatggtatttctgattctagatctttgaggaatcaccatactgtcttccacaatggttgaactaatttacatGGGCCCTTTCTTTCTTAATGTAAATATGCACAAAGACCATATTActtccattttacttaaactctggcaagtacaggtgccataaaacctatggagtgcttgaaaggggatcattctctttgctttctcctcattcttagattatttgtttcccagttttcttcttaaaaagaggaactgagctgaggcctagaggttttctgtggtggatcaatatgtgctgcttgtgggc-gaactccacagtgggtcaccactgaaaacaacagttcagttcatcctgcaaatgcacacagacaagctgaattgagcttaatttggggagaaaaagcaacagagaagaccctttagaatgcatttgtgaactagaattaggacccttaaa---caacttcctagaaggaaaacaaaacaacAGCCAAGACCACTTTTTGTTAACTGTGCTCAGCCACCCCTTAACTTT-TAGCTCTCATCTACCACTATACACAACAAGGTcaaagccaaagaggtcaggtcatgcaatacaggaaaatagaggtttagagttaagaagaatctacccatgactcttgaaactccacaaagaaaacaaaacatcccaaaaggggtgagtggcaacctttgttctgaattctttaagggggttcaagtcattagaagccttctctagactttttggtactgcaaatggcaaagggggaggaggtatatggtgcaagaaaagtaaacgaaagaacaTTCGTTTTTTAAGACAGGAAGCAAACACAGAAACCAAGTGCATGGGTTTTTGGTTCTTTTTGTTTGTTTTCTTCttttgcagctgcaaggaattttagccaaattagagaggttttgttacccataattttgaattctcacttggatttgacgaagtcaggtagagttggtcaagtctgatgggagaaagaccaaaacaaacaacaaaatctccaaccataggattaccaagcactctaatgataaggagaaattaagaccagctagctggttgttaaactttagcccagacaaagccccagttcagctacttacctagggatgagtctcaggctgaaggctgctttctaccaccctagaagcaggaaaaaaactcaaactggtcttccctgctgggagtgagctcaaactctacatgcctttcatcaccatggaaacaggaaatcttgccttccttgtaaaggaagta--------------------------------aaagtaaatcttgccttccttataaggaaggcaaataagcaagtaaaactccaaaaacaaaaatagatggggcagttgtacaacaaaatgaactttagttcttcaccaaatttggggagatcagggattctttggggagggtgctcccagacctcagcaaattgtcctattggtttgagccataaagttagctcatgctattaccaggcaccaacaggatattcatcaaaggtcaagggcatctccactcagaatcctttcacagttaccaAAAtgttaacccagaaaatctgagacaggtctcagttaattgagaaagttgattttgccaaggttgaggatgctccggtgacacagcctcaggaagtcctgatgacatgtgtgtaaggtggtcagataacacttttgttttatacattttagggagacatgagatatcaatcaacatatgtaagatgaacacggatttggtccagaaaaggcaagacaactcgaagcaaaggcgggacaactcgaagctgggagggggcttccggatcataggtatataagggacaaatggttgctttcttttgagtttctgattagcctttcccaaggaggcaatcagatatgcatttatctcagtgagcagaggggtgactttgcatagaatgagaggcaagtttgtcctaagcagttccgagtttgccttttccctttagcttagtgatttgggggccccaatatttattttactttcacaGCCTCCTAACCTTATTTATCCTGCCTCATGTTTAAGAAGGCATCATAACTCTATGACTGAGATCTGGGCAACATTTTTCTTAAGGCATCTGAAAAAATATGAAGCTTATTTTTCATATTTGAACATACCTGAACAAATCATCTTAAACTTGATTGGCTCAATAGCTTAAGGCCATTTCAGAGCTGATAATAGTCAAATAAAAGTAAAAACATCAAGAGCAAGTGCTCCTACTAGAATGCCAAGTTATAGTCACTTACCATATTCTTTCAGATTCAAATGAAGGCACCTCTCTTGGAAATTCTAATTA a score=5704.0 s hg17.chr17_random 2453200 55 + 2618010 GGATATGCACCCCAGCTGCGAC---CTACTCAAGACTGAACTAATTCCAATAAAATAA s panTro1.chr19 42724566 55 - 82489036 GGATATGCACCCCAGCTGCGAC---CTACTCAAGACTGAACTAATTCCAATAAAATAA s rn3.chr10 88596129 50 + 110733352 GGATGTGCACCCCCACCACACCTGGCTACTATGACCTCAACTCCTT------AAAC-- a score=57371.0 s hg17.chr17_random 2453255 248 + 2618010 TTCTTAAAAAGAAAAGCGAGCCTTGAAATTTTCATCCTTTCTGGGTTTATATATATTAAAATGTTAAGTGTGGAGTTGTTTAAATTATAATGTAAACCCGTAGAGACCACAGTCAGCAATATACCATGCTATCCAGATGAACTACAGCTC----------------AATATGCTTTTTTGTCTCAGCAGAACTCACTGGGAAATAAAGCCCACTTTTTGATTATAAATTCCAAAATGTTG--TTATTGAGTAAAATGAATTCAGTA s panTro1.chr19 42724621 248 - 82489036 TACTTAAAAACAAAAGTGAGCCTTGAAAGTTTCATCCTTTCTGGGTTTATATATATTAAAATGTTAAGTGTGGAGTTGTTTACATTATAATGTAAACCCATAGAGACCACAGTCAGCAATATACCATGCTATCCAGATGAAATACAGCTC----------------AATATGCTTTTTTGTCTCAGCCGAACTCACTGGGAAATAAAGCCCACTTTTTGATTATAAATTCCAAAATGTTG--TTATTGAGTGAAATGAATTCAGTA s mm5.chr11 99297181 261 + 121648857 TCCTCAAAAAGAGAAAAGGAGCTTAAGAATTCCAGTCTTGA-AGGTATGTTTCTGATAAAATATTAAGAATGGAAATGCTTGAGGTACAA---AGACTCCAAAAGACCACGTTCTGAAACATTCCACACTATCCAGATGAGTCACAGGCCCTTGAAAACACAACAAAATACGCATTTCT-TCAGAGTGCAATTCCATGAGTAATACAAGTCACTTTGTGATTATAAATTTTCACATGCTGATTCTTTAATTGAAATAAGTTGAGGA s rn3.chr10 88596179 247 + 110733352 TCTTCAAAAAGAGAAAAGGAATTTAAGAGTTCCAGTCCCGCAGGGTGCATATCTGTTAAAATATAAAGAATGGAAATCCTTGAGATACGG---AGACCCTAAAAGACCACGCTCTGAAATACTCCGCACTATGCAGACGAGTCATGTGCACGTGAAAACACAACAAAAT----------------GCGTGATTCCACGAGTAAAACAACTCACTTTGTGACTATAAATTCTGAAATGCTGCCTCATTAATTGAAATAAGTCGAAGA a score=133.0 s hg17.chr17_random 2453503 10 + 2618010 CATGA-----------------AATTC s panTro1.chr19 42724869 10 - 82489036 CATGA-----------------AATTC s mm5.chr11 99297442 27 + 121648857 CATTGTTTTATATTAGTCTATTAATTA s rn3.chr10 88596594 10 + 110733352 CATTA-----------------CATTT a score=27486.0 s hg17.chr17_random 2453513 123 + 2618010 TTTATAGAAGATTTCCCTTC--TTTCATTGGTGTCTAATTT--------TCAGAAATTTGGTTTTATCTTTTTTGTCAAAACAGGGACGATAGTATTATGAGATATAATGTGTTAAAGATA-AAATGTGTT--TCA s panTro1.chr19 42724879 123 - 82489036 TTTATAGAAGATTTCCCTTC--TTTCATTGGTGTCTAATTT--------TCAGAAATTTGGTTTTATCTTTTTTGTCAAAATAGGGACGATAGTATTATGAGATATAATGTGTTAAAGATA-AAATGTGTT--TCA s mm5.chr11 99297612 132 + 121648857 TTTTTAAAAGATTTTTTTTTTATTTCACTGGCATGTACTTTTTTT-CCCTCAGAAATTTGCTTTTATGTTCT---ACAAAATTGATTTGATTGGGATTAAAGGTGTCATATACTAAAGGCATAAGTATTTTAATTA s rn3.chr10 88596604 133 + 110733352 TTAAAAGAAGATTTTTCTTG-ATTTCACTGGCATGTACTTTTTTTCCCCTCAGAAATTTGCTTTTACATTCTTGTACAAAAGTGAGCTGATTGG--TTAAGGGTAGAATATACTAAAGGCATAAGTATTTTAATTA a score=11166.0 s hg17.chr17_random 2453636 21 + 2618010 AGAGC-TAAGGTATGAATTAAA s panTro1.chr19 42725002 21 - 82489036 AGAGC-TAAGGTATGAATTAAA s mm5.chr11 99297744 21 + 121648857 AGAAC-AAAGATGTGAGTTAAA s rn3.chr10 88596737 21 + 110733352 AGAAC-AAGGATCTGAGTTGAA s canFam1.chr9 39375222 22 - 53642819 AGAGCTAAAGACATGAATTAAG a score=19059.0 s hg17.chr17_random 2453657 127 + 2618010 ACTGTCTTAATTTAGGATATTAAGACACATGTGcacacacacacacacaca-tacacacacatata-cacacaGCACTTCTATTCCA----------ATACCGTAAATTATCTA---TATTCGATATAGCATGT--ATCTTCAA s panTro1.chr19 42725023 113 - 82489036 TCTGTCTTAATTTAGGATATTAAG--------------acacacacacaca-cacacacacatata-cacacaGCATTTCTATTCCA----------ATACCGTAAATTATCTA---TATTCGATACAGCATGT--ATCTTCAA s mm5.chr11 99297765 128 + 121648857 ATTTTCCCAATAT---------AGACACATGT------ATACAAATACACATTTCGTGGGTTTATATCACATAGCATTTATCTTTTAAATGATTTATATATAGTTAAATTTCTACTGTATTT-ATATAAAATGTAAATCTTCAA s canFam1.chr9 39375244 112 - 53642819 TCTGTCCCAGTTTAGGATATTAAG--------------ACATATGCATGTA-CACATACACATATA-CATGTGCTGCTT-TGTTCCA----------ATATCCTAAATTATCTA---TATTTGATAAAGCACTT--AGTCTCGA a score=2538.0 s hg17.chr17_random 2453784 9 + 2618010 AGTGATTTC s panTro1.chr19 42725136 9 - 82489036 AGTGATTTC s canFam1.chr9 39375356 9 - 53642819 AGTGATTTC a score=5704.0 s hg17.chr17_random 2453793 43 + 2618010 AACACGGGTTGCTTTTCCTGCATCTTTGTGTAAAATATAATTG s panTro1.chr19 42725145 43 - 82489036 AACACGAGTTGCTTTTCCTGTGTCTTTGTGTGAAATATAATTG s canFam1.chr9 39375568 33 - 53642819 AACATGAGT---------TGTATCATCATGT-AAATATAGTTG a score=859.0 s hg17.chr17_random 2453836 10 + 2618010 -TCAGGGAATC s panTro1.chr19 42725188 10 - 82489036 -TCAGGGAATC s mm5.chr11 99298297 10 + 121648857 -TCGATGATTG s canFam1.chr9 39375601 11 - 53642819 TCTAGTTATTG a score=96681.0 s hg17.chr17_random 2453846 286 + 2618010 AGTAAAATAATTATGAAAGCAATAGAGAATGATACCAATGAA-TTCTTATGTACAG-AAATTTTATTAAAAAGCAGAGATGCAACAAAGCATAAGAAATTCACACTAGGAGAA---ACACAGAATATAACTGGGCGGCTGGATCTGAGGGTGC-----AACCTC---------AGTGACAAA----------ACTGGTCCTGCAGATAATGTCTGCCTCACTGAGAAGAAGATCTGTACCTCAAAGTGATAAAG---------AAAATGAGGAAATTAGAGGATTGGAAT-AATTTCTAGCTAGTGGATTACAAATTAATTCACA s panTro1.chr19 42725198 287 - 82489036 AGTAAAATAATTATGAAAGCAATAGAGAATGATACCAATGAA-TTCTTATGTACAGAAAAGTTTATTAGAAAGCAGAGATATAACAAAGCATAAGAAATTCACGCTAGGAGAA---ACACAGAATATAACTGGGCGGCTGGATCTGAGGGTGC-----AACCTC---------AGTGACAAA----------ACTGGTCCTGCAGATAACGTCTACCTCACTGAGAAGAAGATCTGTACCTCAAAGTGATAAAG---------AAAATGAGGAAATTAGAGGATTGGAAT-AATTTCTAGCTAGTGGATTACAAATTAATTCACA s mm5.chr11 99298307 279 + 121648857 AGTGCAATGGTTATGGAAGACACAGACA---GTACCAATGAA-TTCTTATATGTAAGAAAGTTTATTAGAAAGAATAGAAACAACAGAATAAAAGAAATTCATTTTAGGGGAAAACATACAGAATAGACCCAGCCCCTCAGGTCTGGGGTTGT-----AAAGTC---------AATGCTAAG----------ACAAAGGCTGTAGAAAGTGTCTTATTTACTGGGAAGAA------TAATTTAGAGCTACAAAG---------TCAAT---CCATTTGGAGAACTAGGATGAATTCTTAGCTCACAACTTAGAGATTAATTTCAG s rn3.chr10 88598208 273 + 110733352 AGTTCAATGGTTATGGACAACACAGAGAACAGTACCAATAAATTTTTTATAT-TAATAAAATTTATTAGAAGGAATAGAAACAACAGAATACAAGGAATTCATTTAAGGGAAAAA-ATACAGAGTATATCCAAACCCTAAGGTCTGGGGTTAT-----AAAGTC---------AATAA------------------GGGCTGTAGAAAATGTCTGATTTACTAGGAAGAA------TAATTTAGAGCTACGAGG---------CCAAT---CAATTTGGTGACTTGGGGTAAATTCTTAGGTCATAACTTAGAGATTAATTTCAG s canFam1.chr9 39375612 307 - 53642819 AGAAAAATGATCATGAAAACAATAGAGAACAAGGCCAGTGAA-TTTTTATGTGTAGAAAAGTTTATTA-AAAGCAGAGAAGCAACAAGACATAAGAAATTCACTCCTTCAGAAA--ATACATAAT-----TGGACCCCCAGGTCTTAGGGTATAACTGAACCTCAGATCAGAGAGTGTCAAATCAGTATGGCACAGGAGTTGCAGATAAT---CATTTTGTTAGGAAGGA------TAATCTAGAGCCCCAAAGTGATAAGGAAGAATGACAAATTTAGAGGAATGGGATAATTTTTTAGCTGATAGGTTACAAATTAATATACA a score=10647.0 s hg17.chr17_random 2454132 26 + 2618010 --TTTGGTGCCACCACCGGAAGAAAAAG s panTro1.chr19 42743272 26 - 82489036 --TTTGGTGCCACCACCGGAAGAAAAAG s mm5.chr11 99298586 26 + 121648857 --CACAGTGCAAACATTAGAAAGACATG s rn3.chr10 88598481 26 + 110733352 --CACAGTACCAATATTAGAAAGACATG s canFam1.chr9 39375919 28 - 53642819 TATTTGGTGCCAATACTGAAAGGAAAAG a score=56523.0 s hg17.chr17_random 2454158 155 + 2618010 AAAGCAAGGGAGGGAGTTTAAAATGAATCAGAATGTTCTCAAAGAGTCAGTGAAATGGTGATGGGCTCATTGGAAACATGAGTTCCATTCTATTGAATGACATCAACCCCACTTCCTGTATCCTAATGGTCAGCACAGTAGAAGGGTCTACATCT s panTro1.chr19 39774753 153 + 82489036 AAAGCAAGGGAGGGAGTTTAAAATGAACCAGAATGTTCTCACAG--TCAGCGGGATGGTGATGGGCTCATTGGAAACATGAAATCCAACCTGCTGAATGACATCAATCCCACTCCATGTGTCCTAATATTCAGCACAGAAGAATGGTCTACAACT s mm5.chr11 99298612 153 + 121648857 GTAGCAAACAAGAGAATGTAATGTGAGCCAGGAGGTGTTGACTGATTCTGCGGAA-GATGGT-GGCTCACAAGAATTGTGTGGTCCATCCTGCTAAATGATGCCAAACAGATTCCACGTGTCCTACGGGTTCACATGCAAGAATGGTACATATCT s rn3.chr10 88598507 154 + 110733352 GTAGCAAACAAGAGAATGTAAAGTGAGCCAGGGGGTGTTGACTGACTTTGGGGAG-GATGGTGGGCTCACTGGAACTTTATGGTCCATCCTGCTAAATGATGTAGAACACATTCCATGTGATCTGTGGCTTCACACGCTAGAATGGTACACATTT s canFam1.chr9 39375947 150 - 53642819 ATAATAATGGAAGGAGCTTAACATAAACCAGAATGT----ACTGAGTCAATGGGATGGTGGTGGGATCCCTGGAATCATGAGGCTCAA-CTGTTCAATGATGTTAACCAGACTCCATGTGTCCTAACACTCAGCGCAAAAGAAGGGTCTTTATCT a score=666.0 s hg17.chr17_random 2454313 29 + 2618010 GTGGGCCAGTGGTGAAGGGGGAGA-TAAGC---- s panTro1.chr19 39774906 29 + 82489036 GTGGGCCTGCAGTGAAGGGAGAGA-TGAGC---- s mm5.chr11 99298765 16 + 121648857 GT-------------ACGTGGAGA-TGTGC---- s rn3.chr10 88598661 16 + 110733352 GT-------------AAGAGGAGA-TGAGT---- s canFam1.chr9 39376097 30 - 53642819 GTGGGGCAGAGGTAAATGGAAATAGTGGGT---- s danRer1.chrUn 75491312 34 - 367113659 GTGGATCAGGAGGGAAGGTCCAGGGTGGGTTCAG a score=746.0 s hg17.chr17_random 2454342 5 + 2618010 CAGGG s panTro1.chr19 39774935 5 + 82489036 CAGGG s mm5.chr11 99298781 5 + 121648857 CTAGA s rn3.chr10 88598677 5 + 110733352 CTACA s canFam1.chr9 39376127 5 - 53642819 CACAG s fr1.chrUn 46210988 5 - 349519338 CAAAA s danRer1.chrUn 75491346 5 - 367113659 CAGGT a score=65856.0 s hg17.chr17_random 2454347 110 + 2618010 CAGTGGGCTCAGCAGCAAGAGGAGGCACAGCACAAGGGGCGGGGGCAGCTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAG--ACTGG s panTro1.chr19 39774940 110 + 82489036 CAGTGGGCTCAGCAGCAAGAGGAGGCGCAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAG--ACTGG s mm5.chr11 22191812 112 - 121648857 CAGGTGGGGCGGCAGCAGCTAGAGATGCAGCACTGGGGTCTGCAGCAGCTGGACACACAGCAGCTGGGCCTGCAGCAGCTGGGGCGGCAGCAGCTAGATCCACAGCAGCTAG s rn3.chr10 88598683 110 + 110733352 CAGGGAACTCAGCAGCAGGGGGTGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGCTTTGGCAGCCAACCTGACCACAG--ACTGG s canFam1.chr9 39376134 110 - 53642819 CAGGGGGCTCAGCAGGAAGAGGAGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGATAGCAGGTAGTGTGGCAGGAGACCCGGCCACAG--ACTGG s fr1.chrUn 46210993 108 - 349519338 CAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGTAGCAGCAGCAGCTACAGCAGCAGCAG---CAGCTACAGC-AGTAG s danRer1.chrUn 75491351 103 - 367113659 CAGGGGCCCCGGCAGGGAACCAGAGTGTAGCCGAAGGGTCCGTCCCGAGTGGTGGAGAGGCA-------CACCAGGGAGGAGTGGGAGAGATGACCCAGGGACAA--TCCAG a score=-3431.0 s hg17.chr17_random 2454457 7 + 2618010 ACGCACg- s panTro1.chr19 39775050 7 + 82489036 ACGCAGG- s mm5.chr11 22191924 5 - 121648857 AACTA--- s rn3.chr10 88598793 7 + 110733352 TCTCAGA- s canFam1.chr9 39376244 7 - 53642819 GCGCAgg- s fr1.chrUn 46211101 8 - 349519338 CAGCAGCA a score=85553.0 s hg17.chr17_random 2454464 170 + 2618010 ------------------------cagcagcaggggcggcagcagctggattcacagcaagagggg-cggcagcagctggagatgctgc---------------agctggggcggcagcagttgggctggcagcacacagactggcagcactggggcttgcagcagctggacacacagcagctggggc-gacagcagctggagatgcagca s panTro1.chr19 39775057 171 + 82489036 ------------------------cagcagcaggggcggcagcagctggattcacagcaagagggggcggcagcagctggagatgctgc---------------agctggggtggcagcaggtgggctggcagcacacagactggcagcactggggtctgcagcagctggacacacagcagctggggc-gacagcagctggagatgcagca s mm5.chr11 22191929 170 - 121648857 ------------------------CCACAGCAGGGGCGGCAGCAGCTGGAGATGCAGCACTGGGGT-CTGCAGCAGCTGGACACACAGC---------------AGCTGGGCCTGCAGCAGCTGGGGCGGCAGCAGCTGGAAATGCAACAGGTGGGGCGGCAGCAGCTAGATCCACAGCAGCTGGAAC-TACCACAGCAGGGGCGGCAGCA s rn3.chr10 88598800 209 + 110733352 CAGCAGCAAGGGCGACAGCAGGGCCGACAGCAGGGGCGGCAGCAGCTGGAACCACCACAGGAGGGT-TGGCAGCAGCTGGAGATGCAGCAGCTGGGGCGACAACAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGACAACACTGGGGCCTGCAACAGCTGGACACACAGCAGCTGGGCC-TGCAACAGCTGGACACACAGCA s canFam1.chr9 39376251 153 - 53642819 ------------------------cagcaggaggggcagcag------------------gagggg-cggcagcagctagagccacagg---------------agctggagccacagcaggaggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagcagctggaactgggagcaggaggggcggcagca a score=375.0 s hg17.chr17_random 2454634 1 + 2618010 C s panTro1.chr19 39775228 1 + 82489036 g s mm5.chr11 22192099 1 - 121648857 G s rn3.chr10 88599009 1 + 110733352 G s canFam1.chr9 39376404 1 - 53642819 g s fr1.chrUn 46211109 1 - 349519338 G a score=56773.0 s hg17.chr17_random 2454635 110 + 2618010 CTAGGGTGGCA--GCAGGTCGTCT---------------------------------------------CACAGCAG-------------------------------CTGGGGCGACAGCAG---------------GTGGGTTGGCAGCACACAGGCTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAACAGCTGGG s panTro1.chr19 39775229 186 + 82489036 ctagggcggca--gcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGGCTGGGGCGACAGCAGCTGGAGATGCAGCATCTGGGGCGGCAGCAG---------------GTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGAAGCAGCTGGGCACACAGCAGCTGGG s mm5.chr11 22192100 110 - 121648857 CTGGAAATGCA--ACAGGTGGGGC---------------------------------------------GACAGCAG-------------------------------CTGGGGCGGCAGCAG---------------GTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAGCTGGACACACAGCAGCTGGG s rn3.chr10 88599010 125 + 110733352 CTGGGCCTGCA--ACAGCTGGACA---------------------------------------------CACAGCAG-------------------------------CTGGGGCGGCAGCAGCTGGGGCGGCAGCATGTAGGCTGGCAGCACACAGACTGACAACACTGGGGCCTGCAGCAGCTGGAGATGCAGCAGCTGGG s canFam1.chr9 39376405 95 - 53642819 ctagagatgca--gcagctgggcc---------------------------------------------tgcagcag-------------------------------ctggagccacagcag---------------ctgg--------------aactgg-agcaggaggggcggcagcagctggacacacagcagctggg s fr1.chrUn 46211110 107 - 349519338 CTACAGCAGCA--GCAGCAG---T---------------------------------------------AGTAGCAG-------------------------------CTACAGCAGCAGCAG---------------CTACAGCAGCAGCAGCTACAGCAGTAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCA s danRer1.chrUn 75491454 101 - 367113659 CAGGAGAGACAAGGCAGGAGGTCT---------------------------------------------GTGGGGAG-------------------------------C-----------CAG---------------CTGGATGAGAGGCAACTGGACTGGAATCGGCAGAGCTGGAGGCAGGTGGACAGGAACCGGCGGGG a score=23446.0 s hg17.chr17_random 2454745 88 + 2618010 GCGGTAGCAGG------------TGGTCCTGCAACAGGTGGTCTGACAGCAGCTGGGGCGGGAACAAGTGGGTTGGCAGCACACAGACTGGCAGC-------ACTGG s panTro1.chr19 39775415 88 + 82489036 GCGGCAGCAGG------------TGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCTGCAGTAGGTGGGTTGGCAGCACACAGACTGGCAGC-------ACTGG s mm5.chr11 22192210 100 - 121648857 GCGGCAGCAAGGTCTACAGCAGCTAGAAATGCAGCAGCTGGGGCGACAGCAGCTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAAC-------ACTGG s canFam1.chr9 39376500 95 - 53642819 gcggcagcagg------------tggtctggcaacaggtggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagcagctggaaccgg s fr1.chrUn 46211217 70 - 349519338 GCTACAGCAGC---------------------AGCAGCTACAGCAGCAGCAGCTACAGCAGTAGCA---------GCAGCAGCAGTAGTAGCAGC-------AGCAG s danRer1.chrUn 75491555 58 - 367113659 TTGGAGGCAAA------------TGG-------ACAGG---------AGCCGGCAGGGCTGGAGGGAGCTGGATGGGAGCCGGTGG--------------------- a score=413.0 s hg17.chr17_random 2454745 88 + 2618010 GCGGTAGCAGGTGGTCCTGCAACAGGTGGTCTGACAGCAGCTGGGGCGGGAACAAGTGGGTTGGCAGCACACAGACTGGCAGC-------ACTGG s canFam1.chr9 39376500 95 - 53642819 gcggcagcaggtggtctggcaacaggtggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagcagctggaaccgg s fr1.chrUn 46211217 70 - 349519338 GCTACAGCA---------GCAGCAGCTACAGCAGCAGCAGCTACAGCAGTAGCA---------GCAGCAGCAGTAGTAGCAGC-------AGCAG s danRer1.chrUn 75491555 58 - 367113659 TTGGAGGCAAATGG-------ACAGG---------AGCCGGCAGGGCTGGAGGGAGCTGGATGGGAGCCGGTGG--------------------- a score=-1713.0 s hg17.chr17_random 2454833 1 + 2618010 G-------- s panTro1.chr19 39775503 1 + 82489036 G-------- s mm5.chr11 22192310 1 - 121648857 G-------- s canFam1.chr9 39376595 9 - 53642819 agcaggagg a score=338.0 s hg17.chr17_random 2454833 2 + 2618010 GG s canFam1.chr9 39376595 2 - 53642819 ag s danRer1.chrUn 75491613 2 - 367113659 GG a score=300.0 s hg17.chr17_random 2454833 3 + 2618010 GGC s danRer1.chrUn 75491613 3 - 367113659 GGC a score=-1500.0 s hg17.chr17_random 2454834 1 + 2618010 ------------------------------G s panTro1.chr19 42743912 1 - 82489036 ------------------------------G s mm5.chr11 22192311 31 - 121648857 GTCTGCAGCAGCTGGACACACAGCAGCTGGG a score=100.0 s hg17.chr17_random 2454835 1 + 2618010 C s panTro1.chr19 42743913 1 - 82489036 C s mm5.chr11 22192342 1 - 121648857 C s rn3.chr10 88599135 1 + 110733352 C s canFam1.chr9 39376605 1 - 53642819 g a score=27247.0 s hg17.chr17_random 2454836 24 + 2618010 CTGCAGCAGCTGGATACACAACAG s panTro1.chr19 42743914 23 - 82489036 CTGCAGCAGCTG-ACACACAGCAG s mm5.chr11 22192343 24 - 121648857 CTGCAGCAGCTGGACACACAGCAG s rn3.chr10 88599136 24 + 110733352 CTGCAGCAGCTGGACACACAGCAG s canFam1.chr9 39376606 24 - 53642819 cggcagcagCTGGACACACAGCAG s fr1.chrUn 46211287 24 - 349519338 CAGCAGCAGCTACATCAGCAGCAG s danRer1.chrUn 75491616 24 - 367113659 TGGAGGCAGCTGGACAGGAGCCGG a score=28152.0 s hg17.chr17_random 2454860 27 + 2618010 ---CTGGGGCGGCAGCAGGTGGTCCTGCAG s panTro1.chr19 42726213 27 - 82489036 ---CTGGGGCGGCAGCAGGTGTTCTTGCAG s mm5.chr11 22192367 27 - 121648857 ---CTGGGGCGGCAGCAGGTGGTCCTACAG s rn3.chr10 88599160 27 + 110733352 ---CTGGGGCGGCAGCAGGTGGTCCTACAG s canFam1.chr9 39376630 27 - 53642819 ---CTGGGGCGGCAGCAGGTGGTCCTGCAG s fr1.chrUn 46211311 27 - 349519338 ---CTACAGCAGCAGCAGCTACAGCAGCAG s danRer1.chrUn 75491640 26 - 367113659 CGGTTCTGGAGGCAGCTGG----ACTGGAG a score=52673.0 s hg17.chr17_random 2454887 93 + 2618010 CAGGTGGTCTCACAGCAGCTGGGGCGGC----AGCAGGTCTCCTGACAGAGGTCTTGGCCGC--------AGCCCTGGTCAGAGCACACGGAGCCACAACAGGAG s panTro1.chr19 42726240 93 - 82489036 CAGGTGGTCTCACAGCAGCTGGGGCGGC----AGCAGGTCTCCTGACAGAGGTCTTGGCCGC--------AGCCCTGGTCAGAGCACACGGAGCCACAACAGGAG s mm5.chr11 22192394 78 - 121648857 CAGGTAGTCTGGCAGCAGCTGGGCTGGC----AGCA---------------GCCTTGGCCAC--------AGCCCTCCTCAGAGCAGACAGAGCCACAACAGGAG s rn3.chr10 88599187 78 + 110733352 CAGGTGGTCTGACAGCAGCTGGGCTGGC----AGCA---------------GCCTTGGCCGC--------ATCCCTCCTCAGAGCAGACAGAGCCGCAACAAGAG s canFam1.chr9 39376657 81 - 53642819 CAGGTGGTCTGGCAGCAGGAGGGGCGGC----AGCAGGT------------CTCCTGGCCAC--------AGCCCTGGTCAGAGCAGACCGATCCACAACAGGAG s danRer1.chrUn 75491666 89 - 367113659 CGGCTGGGCTGGAGGCAGCTGGACTGGAGCTGGGCAAGAC-----------GTCTGGGTGGCGTTGGTAAGGCGAGGAGCTGGGCTGGCGGGGC-----AAGGAG a score=22018.0 s hg17.chr17_random 2454980 57 + 2618010 CTGACCATGGTGTCAGAACGGGGAGGATCTGGGT---GGGT---TTTCAAGAGAGTGAAGTTC s panTro1.chr19 42726333 57 - 82489036 CTGACCATGGTGTCAGAACGGGGAGGATCTGGGT---GGGT---TTCCAAGAGAGTGAAGTTC s mm5.chr11 22192472 55 - 121648857 CTGACCATGGTTTTAGAG-GTGAAGGTTCTTGGT---AGGT---TTATAAGAAGATG-GGTTG s rn3.chr10 88599265 56 + 110733352 TTGACCATGGTGTCAGAG-GTGGAGGTTCTGGGT---GGAT---TTATGAGAGAGTGAAGGTA s canFam1.chr9 39376738 57 - 53642819 TTGACCATGGTGTCAGAGGGTGGGGGCTCTGGGT---GGGT---TTCCAGAAGAATGAAGTTC s fr1.chrUn 283346302 48 + 349519338 ----CTGCTGGGTTAGTA------GCTGCTGGGT---TAGTAGCTGCTAGGTGAGT--AGCTG s danRer1.chrUn 75491755 59 - 367113659 -CAGGGCTGGGGCCGGCAGGGCAAGGAGACGGGCTGGGGGC---TGGCAGGGGCAGGACCTTC a score=19838.0 s hg17.chr17_random 2455037 79 + 2618010 TTGGGTTTGGAAGT-----CTTCTGGGTCCATAGCCTCC--TTTATACCCTGCTGAAGGCCCATTGCCACCACGT------CATTATTTCCT s panTro1.chr19 42726390 79 - 82489036 TTGGGTTTGGAAGT-----CTTCTGGGTCCATAGCCTCC--TTTATACCCTGCTGAAGGCCCATTGCCACCACGT------CATTATTTCCT s mm5.chr11 22192527 88 - 121648857 GAAGGTTTGGAAGTGGGAGTCTCCCTGCCCACATCCCCT--TTTATACCCTGCTGAGGGGCTGTTGTCCTCACATGCAG--CATTCTTTCCT s rn3.chr10 88599321 79 + 110733352 TTGGGTTTGGAAGT-----CTCCTTGCCCCACACCCCCT--TTTATACCCCACTGAGCACCTCATATGACTACGT------CATTATTTCCT s canFam1.chr9 39376795 80 - 53642819 TCAAGTGTG---AT-----CTCCCCTGCCATCTGTCACT--TTTATACCCTGCTGAGGGCC-ACTAGGACCATGGGCAGGACAAC-TCTTCT s fr1.chrUn 283346350 77 + 349519338 CTGGGTCAGTAG-------CTGCTAGGTGAATAGCTGCTGGGTCAGTAGCTGCTG--GGTCAGTAGCTGCTGGGT------CAGTAGCTGCT a score=26157.0 s hg17.chr17_random 2455116 100 + 2618010 TATTA----TTTA-CCTCGTGGAAAACTTAATCATGT----------AATTACATAATTGT-GTG--------CTTCTACTTAAATACTCCAAA-AGAGAGAAAATAACCCATTTCCTTTTCCTG s panTro1.chr19 42726469 100 - 82489036 TATTA----TTTA-CCTCGTGGAAAACTTAATCATGT----------AATTACATAATTGT-GTG--------TTTCTACTTAAATACTCCAAA-AGAGAGAAAATAACCCATTTCCTTTTCCTG s mm5.chr11 22192615 101 - 121648857 TGTTA----TTG---TTTGTGTTAA---TAAACATGT----------GGTTATCAAATTAG-GCAAGTTCCATTTCCTGGCTAAATTATCAAGGTAGATGGAAAACA---CAGTTTCTTTTCCTG s rn3.chr10 88599400 105 + 110733352 TGCTAGTATTTAC-CTTCTTGGAAAACGTAATCATTT----------AATTACATAATTGTAATG--------TTTCTAGTTAAATACTCCAAT-AGAAAGAAAGCATGACATTTTCTTTTCCTG s canFam1.chr9 39376875 105 - 53642819 TGTTG----TTTATCCTAATAGAAA-----ATCATGTAGTTTTAGTAAATTAGATAATTAT-GTT--------TATCTGG-TAAATATACCTAT-ATATAGAAAAGGCTCCATTTCCTTCTCCTG a score=-962.0 s hg17.chr17_random 2455216 2 + 2618010 CT- s panTro1.chr19 42726569 2 - 82489036 CT- s mm5.chr11 99299537 2 + 121648857 AT- s canFam1.chr9 39376980 2 - 53642819 -TT a score=60.0 s hg17.chr17_random 2455216 2 + 2618010 CT s canFam1.chr9 39376980 2 - 53642819 TT a score=87115.0 s hg17.chr17_random 2455218 442 + 2618010 -------GTGCTCCTGTGTTT--------CTATTGGAAACACTTGTCATA-TTTCTTCCTTAGTGGGGGTCACCTTTGTCCCTGGTCTCTGCAGTGTCTTTTACAAAGCACTGGTCACATGA--CTCTGACACTTTA-TTTCTAAATGTGATTCTCCCTCCTACCTGTAGATTGCTCTCTGCAAATCATGGGGGACAATTTTTAT-AATGTGAATGTGTC-------TTTTGTTGTCAAATAATGTCCTGGTCAGATGAAATGTTGGAAAGGAATTAGAAGGAAGGACTCAT-TCGGGAGAAGGATGT---------CCCATCTATAATGAAGATGACTCTGATTCCGTGTATGCTTCTTGAATGGTTGGGGAGATGGTCAGA--TCTCAAGGAAGTTATAAACTCTGTGTCAGATCTCATTCCACCACTCCAAGTGAAAGTACTTA--GCCATGACTC-ATTGCCTTTAATGAGTAAAAACAC s panTro1.chr19 42726571 440 - 82489036 -------GTGCTCCTGTGTTT--------CTATTGGAAACACTTGTCATA-TTTCTTCCTTAGTGGGGGTCACCTTTGTCCCTGGTCTCTGCAGTGTCTTTTACAAAGCACTGGTCACATGA--CTCTGACACTTTA-TTTCTAAATGTGATTCTCCCTCCTACCTGTAGATTGCTCTCTGCAAATCATGGGGGACAATTTTTAT-AATGTGAATGTGTC-------TTTTATTGTCAAATAATGTCCTGGTCAGATGAAATGTTGGAAAGGAATTAGAAGGAAGGACTCAT-TCGTGAGAAGGATGT---------CCCATCTATAATGAAGACGA--CTGATTCCGTGTATGCTTCTTGAATGGTTGGGGAGATGGTCAGA--TCTCAAGGAAGTTATAAACTCTGTGTCAGATCTTATTCCACCACTCCAAGTGAAAGTACTTA--GCCATGACTC-ATTGCCTTTAATGAGTAAAAACAC s mm5.chr11 99299539 409 + 121648857 -------G-GCTCCTGTGTTT--------GCAACTGAAACACTGTTCGCATTTTTTTCCATAGT--GGGTCACCTGT---------------------TGCTACAAGTAACTTGTCACAGGACTCTCTGGCATTTTGTTTTTTAAACGTGGCATTCCCTTCCATCCGTACATTCCT---TGAAAATCATAGAAATGCTCTTCCACAAATTCCAGTATGCC-------TTTTGCTATCAAGGAGTGTTCCTCCCAGGTGAGA---TTAGAAGGAGTTAGAAGGAAAGGC-CAT-TTAGAAGGAGACTGT----------CCATCTTTCATGAGAATGATGGTGATTTTGTGTGTCC--ATTAGAGGATCTGGGAAATGTGCAGA--CCT-GAGAACATTCTAAAT----TATCAGATCTCATTCCAGTCTCTTAAGTCGAAGAGCTTG--GCAGTGGTGCAACTACCTAGAAATAATAGAAACTC s rn3.chr10 88599505 405 + 110733352 -------ATAGTCCTGTATTT--------GCAACTAAAACACTGCTTGCA-TTTTTTTC-----------CACTTGT---------------------TGTTGCGAGTAACTTGTCCCATGACTCTCTGGCATTTTGTTTTCCAAATATGACATTCTCCCCCATCTGAACACCATTCCTTGCAAATCATAGAAATAATCTTTCACAAAATCCAGTATGCC-------TTTTGCTGTCAAGGAATGTTCATTCCAGGCGAGAT-TCAGGAAGGAGTTAAAAGGAAAGAC-TGT-TTAGAAGGAGGCTGT----------CCATCTCTCATGAGGACGATGGTGACTTTGTGCGTCC--AGTAGAGGATCTGGGAGATGAGCAGG--CCT-GAGAACATTCTAAAT----TGTCAGCTCTCACTCCACTATCTTAAGTCAAAGAGCTTG--GCAGTGGTGCAACCACTTAGAAATAATAGAAACTC s canFam1.chr9 39376982 437 - 53642819 GTATTGTGAGCTATCTGATTTGGTTAAAACCAAGTGAATCAGCTTCCATA-TTTTTTTC-------------CTTGT-----------CTGATGTGTCTTCCAAAGTACACTC-TCCTATGA--CATTATTTCTTTGGATTTTACAAGTGTTAAATCCTCATTTATGTATTTAACTCCAGGATAAT-----------ATGTTGAGAATGGATTTTATGTCAACTAAATCTTCTAGCCAAGAGGTTAACAAGTCATATGAAAGGCTGGTAGGAAAATAGGGTGAAAGAGCCATCTTGGGGGGCGGGGGCGGGCAATCACTTATGTTCAGTGGGGAATACTGTGATTCCTTTGGATT--TTATGATGGTCAGTGAGGTATAAAAAATCCT-AGCAAAGTACCTATC----TCTTTTGTCTTATTGAATCTATTCGATTTGAAAGTTATAATGTAATGATTC-ACTACTTTTACACAGTAAAAAAAC a score=22893.0 s hg17.chr17_random 2455660 89 + 2618010 A-----TTTTTCTGTATGTCTTACAGCATAGGCATTTGGAGTAGGAAGTTTTGATTTACCTTTGATCATCAAAACTGCATGATGGA-TTTTCATT s panTro1.chr19 42727011 90 - 82489036 A-----TTTTTCTGTATGTCTTACAGTATAGGCATTTGGAGTAGGAAGTTTTGATTTATCTTTCATCATCAAAATTGCATGATGGATTTTTCATT s mm5.chr11 99299948 90 + 121648857 AG----TTTTTTTGTATGTCTTTCTGAAGAACGATTAAGAGTGGGGAAATTTTATTCATCTTTTAATCATGAAACTGCACAGTAGA-TTTTTTTT s rn3.chr10 88599910 95 + 110733352 AATTATTATTTTTGTATGTCTTTCTGAAGAACGAATAAGAGTGGGGAGATTTTATTCATTGTTTAATCATGAAACTGCATAGTAGATTTTTTGCT a score=583.0 s hg17.chr17_random 2455749 9 + 2618010 GAC-AAAAGC s panTro1.chr19 42727101 10 - 82489036 GACAAAAAGC s rn3.chr10 88600005 9 + 110733352 CAC-TAAGGC a score=1638.0 s hg17.chr17_random 2455758 3 + 2618010 ATT s panTro1.chr19 42727111 3 - 82489036 ATT s rn3.chr10 88600014 3 + 110733352 ATT s canFam1.chr9 39377533 3 - 53642819 ATT a score=2399.0 s hg17.chr17_random 2455761 30 + 2618010 TGTTATATGTAAACAATATTTAGAATTATT-- s panTro1.chr19 42727114 30 - 82489036 TGTTATATGTCAACAATATTTAGAATTATT-- s canFam1.chr9 39377536 28 - 53642819 GAATATGTGTGTTGAATATTTA----TATTCT a score=-31.0 s hg17.chr17_random 2455791 1 + 2618010 A s canFam1.chr9 39377564 1 - 53642819 G a score=273.0 s hg17.chr17_random 2455791 1 + 2618010 A s panTro1.chr19 42727144 1 - 82489036 A s mm5.chr11 99301015 1 + 121648857 A a score=108318.0 s hg17.chr17_random 2455792 610 + 2618010 AGCCTTCAAT-------AATATGCATCCAAGACATTCTATTGGGTAC-TCTGGGTATAGAACAGATAAACCCTCCTCTTTTTCCTGCA-GGTACTTGTATAAGACACAT---GCATAAGAAACAGAATTTGGCA-AAAATGAAAA------------GAAT-----TACAATTATGTTCATTAAACAACTAAAATAAAAATGTATAGTATGTGGATAATTTCCACACACCCTC------AGTGTA----------------TATATAT-----------------------------------------ATTacttgtgaagtattgactatgtaccagacattgtgctaaatatctt-------tttcatt-------ttcactctttaatacaa--ccttaaaaagta-ggtacattcttattactcttttagcagaatactcaaaagaagcattaa--aaagctaaaacaaacaaacaaaatacttgtccaagattaaagagaaagtaagCCTAATATGTCTTAGTGTAGCCAAGAAAGCGATAAAGAATAC-AATTTGctaagcttgctgagactgcttcatct-tcttggaatgtttcatctttttttgtccactctgcaaactcctactcatgtgtcaaaacccagttaaaatatttccttctcaataatatatttcctaaTAAGCTACCCCATTCATCTATTATTATTT----CCTGTCTT s panTro1.chr19 42727145 620 - 82489036 AGCCTTCAAT-------AATACGCATCCAAGACATTCTATTGGGTAC-TCTGGGTATAGAACAGATAAACCCTCCTCTTTTTCCTGCAGGGTACTTGTATAAGACACAT---GCATAAGAAACAGAATTTGGCA-AAAATGAAAA------------GAAT-----TACAAGTATGTTCATTAAACAGCTAAAATAAAAATGTATAGTATGTGGATAAGTTCCACACACCCTC------AGTGTA----------------TATAtat-----------------------------------------gttacttgtgaagtattgactatgtaccaaacattgtgctaaatatcttatatttatttcatt-------ttcactctttaatacaa--ccttaaaaagtactgtagattcttattactcttttagcagaATACTCAAAAGAAGCATTAA--AAAGTTAAAACAAACAAACAAAATGCTTGTCCAAGATTAAAGAGAAAGTAAGCCTAATATGTCTTAGTGTAGCCAAGAAAGCGATAAAGAATAC-AATTTACTAAGCTTGCTGAAActgcttcatct-tcttggaatgtttcatctttttttgtccactctgcgaactcctactcatgtgtcaaaacccagttaaaatatttccttctcaataatatctttcctaaTAAGCTACCCCATTCATTTATTATTATTT---CCCTGTCTT s mm5.chr11 99301016 613 + 121648857 AGACTTTGGC-------AATATATATGAAAGAGTTTTTGCTGACTGT-TCTTAGCACAGAACAAGTAGCCCTTACTCCTTT--CTGTG-AGTGGTTGGATAGGACACAG---GCAGAGGGA--AGCATTTGGCACAAGATTAAGA----------CTTAATCTTAATGCAATGACTTAAATGAAGCAACTAAAATCAAAATATGCAGTATATGAATGTGTCCCATGTACTCTTGGTGGGAGTGTAGTTTGTAAAATGTCCCTACATATTAGACAC-----------TGTGTGGGTTGTGTCTAGGGGGAATAAATTGTAAAGTGTC-ACCATGAATCAAACATTGTGTGA---------------TTATATT-------TTTTCTGTTTTTAACAG--TTCTATGAAGTC-------TACTCATTCTTCTTTTGATAGAGGAGCTTAAAGAAGCACAGA--GAGGCTAAAAT-------CAAAACATCTGCCCAAGAGGAAACACAACGTGAGCTGAACCTGCCTCTGAGTAGCAGAAGGAG-AATGAAGAATTA-AGCTTGGAGCCTTTGCTGGAGGTGTTTTATCT-TCTTGGAATG-------------------------------CTGCTCAGCCATCAAGGCTCAACAGAGATGTTCTTTCCTGCGTGGTGTCTGTCCTGCTAAA-TGGCCCTCTCACATGTCATGACCC--TCCTTGTCAA s rn3.chr10 88600753 609 + 110733352 AGATTTTGGC-------AATATATGTGCAGGAGTTTCTGCTGGCTAT-TCTAGGCATAGAGCAGGTAACCCTCACTCCTTT--CTGTG-AGTGGTTGGAAAAGACACAG---TCAGAGGGA--GCCATTTGGCACAAGATAAAAA--------------AT-----TCCAATGACTTTAATGAAATAATTAAAATCAAAATGTGCAGTATTTGAATGTGTTCCACGTACCTTTGGTGGGGGTGTAGTTTGTAAAATGTTGCTACACATTTGACCCTGTGTGTGCTGTGTGTAGGGGAT-----------ATAGTTTGTAAAGTGTA-ACTATGTATCAGGCACTTTGTGA---------------TTGTATTGTATTTCTTTTGTTTTTAACATAG--TTCTCTGATGTG------CTATTCATTCTTCTTTTGATAGAGCGGACTAAAGAAGCACAGA--GAGGCTAAAAC-------CGAAACATCTGGCCAAGAGGAAACACAACGCGAGCTGAACCTGCCTCTGAGTAGCAGAGGGAG-TGTGAAGAATTA-AGCTTGCAGCCTTTGCTGGAGGTGTTTCATCT-TCTTGGAATG-------------------------------CTGCTCGCCCATCAAGACTCAGCAGAGATGTTTGCTCCTGCACGGTGTCTGTTCTGCTAAACGTCCCTCTTCACATGTCATGA------CCCTAACTT s canFam1.chr9 39377565 589 - 53642819 AGCTTTTGTCTCTCAAAAAGTTATGTTTGAGGTATTTTGCTTGATATAAATGAGATCTAAGGAGTTAAGCTTTAATTTGTGTCCTATA-GGCACTTCAATAAGACAAAGAACACATATGTA--GGGGTTTGGAA-AGCATGTAGAACATTGTGTGATAAAT-----AACAATTATGT-ATTTAAATGTATACACTTATGAAATATGAGAT-----------------------------AATGC-----------------TAaaaatt----------------------------------------actatttttg-agtgcctgttgtgtgtcaggaattttctga-gtcttctgtaattgttacctt-------atttatacttcacaggggcttctaagaggtg------gtcaggatttttctt-------aattcttcagacatgaggtaactgaggcttagatagatt--gaAATCATGTAGTCAATAAGGAAGA----------TGGTTCTTTCCTAGAATATTCAAAGACT-TATGAGGAGTAATAATCCCATgtccttcctcatactgtttcatttgtgttaatgtg---ctttctcccttgtcaatttaactaactcttgctcatatataaatgtctagtctggatatcaactcatttctaatgtctttcttgacatc-taccccattcaaa----atgaatctttctttccctt a score=1104.0 s hg17.chr17_random 2456402 3 + 2618010 GTG s panTro1.chr19 42727765 3 - 82489036 GTG s mm5.chr11 99301629 3 + 121648857 GTG s canFam1.chr9 39378154 3 - 53642819 ttg a score=368.0 s hg17.chr17_random 2456402 6 + 2618010 GTGCTC s canFam1.chr9 39378154 6 - 53642819 ttgctc a score=873.0 s hg17.chr17_random 2456405 3 + 2618010 CTC s panTro1.chr19 42727768 3 - 82489036 CTC s canFam1.chr9 39378157 3 - 53642819 ctc a score=6408.0 s hg17.chr17_random 2456408 28 + 2618010 ATAATTTGATACATTCTACTGTATCATA s panTro1.chr19 42727771 28 - 82489036 ATAATTTGATACATTCTACTGTATCATA s rn3.chr10 88601362 28 + 110733352 CTAACTCAGCACATTCTACTTCATGATA s canFam1.chr9 39378170 28 - 53642819 gtgatataaggtatcacactctaacata a score=0.0 s hg17.chr17_random 2456436 3 + 2618010 GAC a score=300.0 s hg17.chr17_random 2456436 1 + 2618010 G s panTro1.chr19 42727799 1 - 82489036 G s rn3.chr10 88601390 1 + 110733352 G a score=191.0 s hg17.chr17_random 2456437 2 + 2618010 AC s panTro1.chr19 42727800 2 - 82489036 AC a score=25787.0 s hg17.chr17_random 2456439 242 + 2618010 ATTTACTTCTTTCATtcccccatatacagtgc----aaataccctgaatgcatgggctatgatgtttctttttgttaccatgatactcagcacagagaacactggtgataaatgtttcttgagtgaatgaaGGCTTT-TTGATGACATAGAAGCATGTAAG-GTCCTTTAAAAGTGTAT-----ATATCTTTTGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAGGG----------GATCAGAGTTTCATTTCAGG s panTro1.chr19 42727802 242 - 82489036 ATTTACTTCTTTCATTCCTCCGTATACAGTGC----AAATACCCTGAACGCATAGGCTATGATCTTTCTTTTTGTTACCATGATACTCAGCACAGAGAACACCGGTGATAAATGTTTCTTGAGTGAATGAAGGCTTT-TTGATGACATAGAAGCATGTAAG-GTCCTTTAAAAATGTAT-----ATATCTTTTGACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAGGG----------GATCAGAGTTTCATTTCAGG s canFam1.chr9 39378198 249 - 53642819 attggcttatatcttttttcc---tccagtccttctatatactccatgaggccagactgtcttattcatatatacaaacatggtgcctagca-----attactctgaatgaatgttaattaaatgaatgTGGGATTTATTGAAAACATAG-TGCATTTACTCACCCTTTATCATACTATAGATAATATATATGGA----TGGAGAAAAGAAAAAAGAATATT-CAGACAATGGTGATATGATTGAATGGGGGTTTATTTTTGG a score=0.0 s hg17.chr17_random 2456681 10 + 2618010 AAAACTACAC a score=937.0 s hg17.chr17_random 2456681 10 + 2618010 AAAACTACAC s panTro1.chr19 42728044 10 - 82489036 AAAACTACAC a score=5900.0 s hg17.chr17_random 2456691 73 + 2618010 TTATTTCTATGGTAAGTAACATGTCCCCTGATAAATAACATATGTGGAAAGTTGTGGAA-GTTAGGATTCTGTT s panTro1.chr19 42745761 72 - 82489036 TTATTTATGTGGTAAGCAACATGTCCCCTGATAAATAGCATATGTGGAATCTTGTGGAA--TTAGGATTCTGTT s canFam1.chr9 39378447 68 - 53642819 CCTCTGATGGAGTAAATGACTTGTTC------GGATGGTATGTGTAGGAGGGTAAAGAAAAATAATAGTCTACT a score=2797.0 s hg17.chr17_random 2456764 14 + 2618010 TATAGAATGAGACT s panTro1.chr19 42745833 14 - 82489036 TATTGAATGAGACT s mm5.chr11 22196999 14 - 121648857 TATAAAAGGGGACA s canFam1.chr9 39378515 14 - 53642819 GCTAAAATGATATT a score=1370.0 s hg17.chr17_random 2456778 10 + 2618010 TGGTTATAGA s panTro1.chr19 42745847 10 - 82489036 TGGTTACAGA s mm5.chr11 22197013 10 - 121648857 TGGGCAGGGA a score=50010.0 s hg17.chr17_random 2456788 589 + 2618010 TAACCAGGAAtaccgtgtcttcccactgtggaaggaaaaagagagggtgagacagagaaagagggagtcaaactcatccttttataaggaaccctcttttgtgataacagcattaatccactcatgagggtggtgtcaccatgacccaaacatctcctgttaggcccaacctcccaacactgcggcattgaggatcaagtttccaacacatgaactttgagggacacattcaaaccattgcattccacccttggtcccccaaatccatgtccttctcgtacacaaaatatattcattttattccaatagtcccaaagtattaacttgttccagcaccaacttaaaagtcaaaatgtaaatctaagagtctcatgtgactctgatatgaataagactcaacacaggacttatcctgaggcaaattctcctccatatgtgaacctattaaagacgttatctagttccaaaatccaatggtgggagaggcataggatagacaggcccattccaaaaggcagcaacaggaaagaaaaaagggtaactggccccaggtgagtccaacagggaagacagcattaaatcttaagac s panTro1.chr19 42745857 580 - 82489036 TAACCAGGAATACCATgttatcccattgtggaagg---gagagagggtgagacagagaaagaaggagtcaaactcatccttttataaggaacccactcttgtgataacaacattaatccactcatgagggtggtgtcaccatgacccaaacatctcctgttaggccccacctcccaacactgctgcattgaggatcaagtttccaacacatgaactttgagggacacattcaaaccattgcattccacccttggccccccaaatccatgtccttctcatacgcaaaatatattccttttatcccaatagtcccaaagt-----catgttccatcaccaacttaaaagtcaaaatgtaaatctaagagtctcatgtgactctaatatgaatgagactcaacacaggacttatcctgaggcaaattctcctccatatgtgaacctattaaagaagttatctagttccaaaatccaatggtgggagaggcataggatagacaggcccattccaaaagggagcaacaggaaagaaaaaagggtaactggccccaggtgagtccaacagggaagacagca-taaatcttaagac a score=-100.0 s hg17.chr17_random 2458219 13 + 2618010 CCAGCCCACCCAA s danRer1.chrUn 46117193 13 + 367113659 CCGGCTCCTTGCT a score=91.0 s hg17.chr17_random 2458231 1 + 2618010 A s fr1.chrUn 303307885 1 + 349519338 A a score=100800.0 s hg17.chr17_random 2458232 147 + 2618010 CTGCTG---TCACCCCAGCTGT-TGTCAGACCACCTGCTGCAGAACCACCTCCTGCTCCCACAGCTGCTCTGTGTCC------AGCTGCTGC---------------AGACCCCAGTGCTGCCATTCCGTGTGCTGCCAGCCC---------------ACCTGCTGCCGCCCCAGCTGCTGTCAGAC s panTro1.chr19 42713446 147 - 82489036 CTGCTG---CCACCCCAGCTGC-TGTGAGACCACCTGCTGCAGGACCACCTGCTGTCGCCCCAGCTGCTGTGTGTCC------AGCTGCTGC---------------AGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAACCC---------------ACCTACTGCAGCCCCAGCTGCTGTCAGAC s mm5.chr11 22197144 147 - 121648857 CTGCTG---CCAGCCCAGCTGC-TGCCAGACCACCTGCTGTAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCC------AGCTGCTGC---------------AGACCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCC---------------ACCTGCTGTCGCCCCAGCTGTTGCATTTC s rn3.chr10 22127003 132 - 110733352 CTGCTG---CCAGCCCAGCTGC-TGTCAGACTACCTGCTGTAGGACCACCTGCTGCCGCCCCAGCTGTTGTGTGTCC------AGCTGCTGC---------------AGGCCCAGCTGCTG------TGTGT---------CC---------------AGCTGCTGCAGGCCCAGCTGCTGTGTGTC s canFam1.chr9 14246319 177 + 53642819 ctgctg---ccgcccctcctgc-tgccagaccacctgctgcaggaccacctgctgccgccccagctgctgtgtgtcc------agctgctgccgcccctcctgctctagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctgcCAGAC s fr1.chrUn 303307886 153 + 349519338 CTGCTG---TAGCTGCTGCTGC-TGTAGCTGCTGCTGCTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTACTGCTGTAGCTGCTGC---------------TGCTGCTGTAGCTGCTACTACTGCTGCTGCTGCTGT---------------AGCTGCTGCTGCTGTAGCTGCTGCTGATG s danRer1.chrUn 46117206 138 + 367113659 CTGCTGACACCAGCCCGGCTCCTTGCCCTGTCGGCTCCAGTCCAGCTGCCTCCAGCCCCAccagctcct----gtcc------agctgcctc---------------cagcc------ctgccagctcctgtccagct---cT---------------GCCTCCTGCCCCGCCGGCTCCTGTCCAGC a score=10858.0 s hg17.chr17_random 2458379 19 + 2618010 CACCTGCTGCAGGACGACC s panTro1.chr19 42713593 19 - 82489036 CACCTGCTGCAGGACCACC s mm5.chr11 22197291 19 - 121648857 TAGCTGCTGCAGGCCTTCC s rn3.chr10 22127135 13 - 110733352 CAGCTGCTGCAGG------ s canFam1.chr9 14246496 19 + 53642819 CACCTGCTGCAGGACCACc s fr1.chrUn 303308039 19 + 349519338 TAGCTGCTGCTGCTGCTGC a score=24153.0 s hg17.chr17_random 2458398 28 + 2618010 TGCTGCCACCCCAGCTGCTGTGTGTCCA s panTro1.chr19 42713612 28 - 82489036 TGCTGCCGCCCCAGCTGCTGTGTGCCCA s mm5.chr11 22197310 28 - 121648857 TGCTGCCGCCCTAGCTGCTGTGTGTCCA s rn3.chr10 22127148 19 - 110733352 ---------CCCAGCTGCTGTGTGTCCA s canFam1.chr9 14246515 28 + 53642819 tgctgccgccccagctgctgtgtgtcca s fr1.chrUn 303308058 22 + 349519338 TGCTACTACTGCTGCTGCTGCT------ s danRer1.chrUn 46117558 28 + 367113659 TGCCTCCAGCCTCGCCGGCTCCTGTCCA a score=20705.0 s hg17.chr17_random 2458426 23 + 2618010 GCTGCTGCAGACCCCAGTGCTGC s panTro1.chr19 42680859 23 - 82489036 gctgctgcAGACCCCAGTGCTGC s mm5.chr11 22197338 23 - 121648857 GCTGCTGCAGGCCTCAGTGCTGC s rn3.chr10 22127167 23 - 110733352 GCTGTTGCAGACCCCAGTGTTGT s canFam1.chr9 14246543 23 + 53642819 gctgctgccgcccctcctgctcc s fr1.chrUn 303308080 23 + 349519338 ACTGCTGTAGCTGCTGCTGCTGT s danRer1.chrUn 46117586 23 + 367113659 GCTGCCTCCAGCCCCGCCGGCTC a score=4566.0 s hg17.chr17_random 2458449 7 + 2618010 CATTCCG s panTro1.chr19 42680882 7 - 82489036 CAGTCTG s mm5.chr11 22197361 7 - 121648857 CAGTCTG s rn3.chr10 22127190 7 - 110733352 CAGTCTG s canFam1.chr9 14246566 7 + 53642819 agttcca s danRer1.chrUn 46117609 7 + 367113659 CAGTCCA a score=8193.0 s hg17.chr17_random 2458456 11 + 2618010 TGTGCTTCCAG s panTro1.chr19 42680889 11 - 82489036 TGTGCTGCCAG s mm5.chr11 22197368 11 - 121648857 TGTGCTGCCAG s rn3.chr10 22127197 11 - 110733352 TGTGCTGCCAG s canFam1.chr9 14246573 11 + 53642819 gctgctgtggc s fr1.chrUn 303308358 11 + 349519338 TGTGCTTACTG s danRer1.chrUn 46117616 11 + 367113659 GCTGCCTCCAG a score=3151.0 s hg17.chr17_random 2458467 6 + 2618010 -CCCACc s panTro1.chr19 42680900 6 - 82489036 -CCCACT s mm5.chr11 22197379 6 - 121648857 -CCCACC s rn3.chr10 22127208 6 - 110733352 -CCCACC s canFam1.chr9 14246584 6 + 53642819 -tccagc s danRer1.chrUn 46117627 6 + 367113659 CCCCGC- a score=12369.0 s hg17.chr17_random 2458473 56 + 2618010 tgctgc---------------caccccagctgctgcatctccag------------cagctgctg---------------------------------------------------------------------------------------------cccctcttgctgtg-----------------------------------------aatc s panTro1.chr19 42680906 161 - 82489036 tgctgc---------------cgtcccagctgctgcatctccagctgctgccgccccagctgctgtgtgtccaggtgctgcaggccccagtgctgccagtctgtgtgctgccagcccacctgctgtcatcctagctgctgcatctccagctgctgccacccctcttgctgtg-----------------------------------------aatc s mm5.chr11 22197385 112 - 121648857 TGCTGC---------------CGCCCCAGCTGCTGCATTTCCAG------------CTGCTGCAG------------------------------------------------------------------------------ACCTTCCTGCTGCCGCCCCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCTCTTGCTGCATCTCCAGCTGCTGTC s rn3.chr10 22127214 71 - 110733352 TGCTGCCGCCCCAGCTGTTGTCGCCCCAGCTGCTGCATCTCCAG------------CTGCTGCCA---------------------------------------------------------------------------------------------ACCCTCCTGTGGTG-----------------------------------------GTTC s canFam1.chr9 14246590 56 + 53642819 tgctgc---------------aggcccagctgctgcatctctag------------ctgctgccg---------------------------------------------------------------------------------------------cccctcctgctgtg-----------------------------------------gctc a score=7358.0 s hg17.chr17_random 2458529 26 + 2618010 ---------------gagctgctgctgcccc------------------------tgctgctgcC s panTro1.chr19 42681067 26 - 82489036 ---------------cagctgctgccgcccc------------------------tgctgctgcC s rn3.chr10 22127285 50 - 110733352 ---------------CAGCTGCTGCCGCCCCTGCTGTCAGCCCTGCTGTCGTCCTTGCTGCTGTC s canFam1.chr9 14246646 53 + 53642819 cagctcctgtggctctagctgctgccgcccctcctgctgcccc------------tcctgctgcc a score=100.0 s hg17.chr17_random 2458554 1 + 2618010 C s fr1.chrUn 303308371 1 + 349519338 C a score=31602.0 s hg17.chr17_random 2458555 63 + 2618010 TGCGTCCAGTCTGTGGTCGAGTC---TCCTGCCACGTCACTT-GCTATCATCCAACCTGTGTCATCT s panTro1.chr19 42681093 63 - 82489036 TGCGTCCAGTCTGTGGCCGAGTC---TCCTGCCACACCACTT-GCTATCGCCCAACCTGTGTCATCT s mm5.chr11 22197612 65 - 121648857 TGTGTCCAG-CTGCTGCAGACCCCAGTGCTGCATCTCCAGCT-GCTGCCGCCCCACCTGTTGCCAGA s rn3.chr10 22127335 63 - 110733352 TGAGACCAGTCTGTGGTCAGGTC---TGCTGCCAAAGCACCT-GCTACCGCCCCACCTGTGTCATCT s canFam1.chr9 14246699 63 + 53642819 TGCGCCCAGTCTGTGGCCGGGTC---TCCTGCCACACTACCT-GCTATCGCCCCACCTGTGTCATCT s fr1.chrUn 303308372 62 + 349519338 TGTG-CTAATGTGCAGCTCGGAG---CTCAATCACGCCACCTCGCTAACATCCT-CCTGTGGGCTCT a score=21362.0 s hg17.chr17_random 2458618 34 + 2618010 CCACCTGCCCCCACCCCTTGTGCT---GTGcctcccc s panTro1.chr19 42681156 34 - 82489036 CCACCTGCCCCCGCCCCCTGTGCT---GTGCCTCCTC s mm5.chr11 22197677 37 - 121648857 CCACCTGCTGCCGCCCAGCATGCTCTAGTGGCTCTTG s rn3.chr10 22127398 34 - 110733352 CCACCTGCCCCCGCCCCATGTGCT---GTGCCACCCC s canFam1.chr9 14246762 34 + 53642819 CCACCTGCCCCCGTCCCATGTGCT---GTGCCTCCTC a score=91.0 s hg17.chr17_random 2458652 1 + 2618010 t s canFam1.chr9 14246796 1 + 53642819 T a score=-1551.0 s hg17.chr17_random 2458652 1 + 2618010 t------------- s panTro1.chr19 42681190 1 - 82489036 T------------- s mm5.chr11 22197714 14 - 121648857 CTGCTGAGAACCAT a score=-232.0 s hg17.chr17_random 2458653 2 + 2618010 cc s mm5.chr11 22197728 2 - 121648857 CA s canFam1.chr9 14246797 2 + 53642819 TG a score=1298.0 s hg17.chr17_random 2458655 19 + 2618010 -----ccttcccctccccttccct s panTro1.chr19 42709763 19 - 82489036 -----cctttcccttcccttccct s mm5.chr11 22197734 19 - 121648857 -----CAGTCTCCTGTTCTTCATC s canFam1.chr9 14246799 19 + 53642819 CTGCTGAGCCCCCTGCCCT----- a score=1228.0 s hg17.chr17_random 2458674 8 + 2618010 tccccacc s panTro1.chr19 42709782 8 - 82489036 tcccttcc s mm5.chr11 22197753 8 - 121648857 ACCCCACC a score=496.0 s hg17.chr17_random 2458682 18 + 2618010 cgttcccctccctttc------tt s panTro1.chr19 42709790 23 - 82489036 c-ttcccctcccttcccttccctt a score=2604.0 s hg17.chr17_random 2458700 30 + 2618010 cctttcccttgccctcccctc-----ccctccccg s panTro1.chr19 42709813 35 - 82489036 cctttcccttcccttcccttctgtttccctcccct s rn3.chr10 88893000 26 + 110733352 ACTATCCCTCTCCGTCCCCTC-----TCCTT---- a score=5162.0 s hg17.chr17_random 2458730 86 + 2618010 cccttcccctcccctcctctccccagtgttaatcccctccccttccccttcc----------ccttctctcccttcactttcccct----cccctcccct s panTro1.chr19 42709848 65 - 82489036 tcccttcccttcccttctct------------ttccctccccttccccttcc----------ctttccct---------ttcccct----cccctccctt s rn3.chr10 88893026 48 + 110733352 --------------------------------CCCCCTCTCCCTCCCCCTCT----------CCTTCTCC------ATCTTCCTCT----CCCTCTTCCT s canFam1.chr9 14254869 90 + 53642819 CACACTACCTGCTATCGCCCCACCTGTGTCA-TCTCCACCTGCCCCCGTCCCATGTGCTGTGCCTCCTCT---------TGCTGCTGAGCCCCCTGCCCT a score=1620.0 s hg17.chr17_random 2458816 32 + 2618010 cccctcccctcccctcccctcatttccccagt- s panTro1.chr19 42709913 23 - 82489036 ----tcccctcccctgccctc-----cccagt- s rn3.chr10 22130480 28 - 110733352 CCACTCTCTTTCCTTCCCTTC-----CACGAGA a score=25053.0 s hg17.chr17_random 2458848 92 + 2618010 gttaatcccaagagcatgcttcaataaacctcctgcatattgctctccatctcagtgtctgcttcctggggaacccagcctgTCCCCCAAAA s panTro1.chr19 42709936 92 - 82489036 gttaatcccgagagcatgcttcaataaacctcctgtatgttgctctccatctcagtgtctgcttcctggggaacccagcctgTCCCCCAAAA s mm5.chr11 22346157 88 - 121648857 GTTGATCCCCAGAACATGTCCCCATGAGCCTTCAGCATGCCGATCTCTGCCTCAGCACATGCTCTCTGGAGATTTCCATCTATTCC----AA s rn3.chr10 22130508 87 - 110733352 GCTGATCCTTAAAACATGTCCC-ATGAACCTGCCGCACGCTGATCTCTGTCTCAGCTCATGCTTTCTGGAGATTCCCACCTCCTCC----CA a score=23813.0 s hg17.chr17_random 2458940 93 + 2618010 CAATTTGAAATTCATGATAGCTAATTTGAGAGCTCAAATGACTGACTGAAATGTACTTTTAATATT-TTAGTTCCTGAAAGAAATAAGAATGTA s panTro1.chr19 42710028 93 - 82489036 CAATTTGAAATTCGTGATAGCTAATTTGAGAGCTCAAATGACTGACTGAAATCTACTTTTAATATT-TTAGTTCCTGAAAGAAATAAGAATGTA s mm5.chr11 22346245 90 - 121648857 AAACCTG---CCCACGATCGATGACTTGAGAGCTGTAACTATTCATTAAAGTGAATGTTCAATCTG-CCTGTGCCTCGTAGAAATAAGAATACA s rn3.chr10 22130595 90 - 110733352 AAACCTG---TTCATGATTGATGGCTTGAGAGCTAGAACCATTCATTAAAATGGATGTTCAATCTC-TCGGTGCCTCGTAGAAATAAGAATGCA s fr1.chrUn 303308464 90 + 349519338 CTGTCTCACATTCATTCCCTGTAATGTCTGAGC----AGAATTAATTAAACAGAAAGGTGAATCTGATTGGTTCTTAGCTCGAATGAGTGTCTA a score=18082.0 s hg17.chr17_random 2459033 85 + 2618010 AACATAATAGCAGAAAACATACTTAACAGAATCTGTAGaaaaaattatgaattttatataaatcaaatttattattttCTAAGGA s panTro1.chr19 42710121 84 - 82489036 AACATAATAGCAGAAAATATATTTAACAGAATATGTAGAAAAA-TTATGAATTTTATATAAATCACATTTATTATTTTCTAAGGA s mm5.chr11 22346335 73 - 121648857 AGCATGATGGCAGAAACT-CGTTGCACATAATCCATGAAGAAAATTATTAAGTTTATTCAATTAACATTTATCA----------- s rn3.chr10 22130685 84 - 110733352 AGCACGACGACAGAAA-TATGTTGCACGTGATCCAAGAAGAAAATAACAAAGTTTATATAAATAACATTTATTCCTTTCTAGGAA a score=3745.0 s hg17.chr17_random 2459118 36 + 2618010 TTTTTATATCATTTATACACAAATATATGCTCTTTA s panTro1.chr19 42710205 36 - 82489036 TGTTTAGATCATTTATACACAAATATATGCTCTTTA s mm5.chr11 22346408 28 - 121648857 --TTTATACCTTT------CTAGGATAACCTCTCTA a score=2298.0 s hg17.chr17_random 2459154 26 + 2618010 AACATTTAGACAATACAAAAGAATGC s panTro1.chr19 42710241 26 - 82489036 AACATTTAGACAATACAAAAGAATGT a score=3004.0 s hg17.chr17_random 2459180 38 + 2618010 AACCAAAGGTAAGTTTCCCATCACGGTCTTTGCCAATC s panTro1.chr19 42710276 38 - 82489036 AACAAAAAGTAAGTTTCCCATCATGGTTTTTGCCAATC a score=55063.0 s hg17.chr17_random 2459218 600 + 2618010 CCATTCAATACCTAATGTTACAAATTGAGATACATCCTCATTAAATGCATGCATAACACATGTATGTATTTATTTGAAAACTTGGCTTTCGTTGCACATCTCTTGTTCTGACATTTATTCAAACGTTATTTTATGTCCTTCAGGAAATATTAACACTTTCCTTCACATAGGCTTGGCAGATTTATTTACATATTTTTCTATTTACTCTTGAGAATTGTGAGCACATTGttcttttttaaaattattcttaaagtcctagggtacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtgtttctcctaatgctatccctccctcctccccccaccccacgacaggccccactgtgATTTTTCTCCATTAAATTTTAGAGACAATTATTGCTAGTGTATAAAAAGTCTATAGATTAGTATAAGTTCATATTTTATCTGATCTCATGATTCATACTAATACCCAGCTGACTCTCCAGGATTTTGTAGGTGTGCAATCATGGTGGCCAAGTGCCTCCAGCCTCAGGCCTGTCCCcggggttcatccccaga s panTro1.chr19_random 18278985 600 + 57627672 CCATTCAATACCTAATGTTACAAATTGAGATACATCCTCATTAAATGAATGCATAACACATGTATGTATTTATTTGAAAACTTGGCTTTCGTTGCACATCTCTTGTTCTGACATTTATTCAAACGTTATTTTATGTCCTTCAGGAAATATTAACACTTTCCTTCACATAGGCTTGGCAGATTTATTTACATATTTTTCTATTTACTCTTTAGAACTGTGAGCACGttgttctttttttaaattattcttaaagtcctagggtacatgtgcacaatgtgcaggtttgttacatatgtatacatgtgccatgttggtgtgctgcacccattaactcgtcatttacactaggtatttctcctaatgctatccctccctcctccccccaccccacgacaggccccagtgtgATTTTTCTCCATTAAATTTTAGAGAGAATTATTGCTAGTGTATAAAAAGTCTATAGATTAGTATAAGTTCATATTTTATCTGATCTCATGATTCATACTAATACCCAGCTGACTCTCCAGGATTTTGTAGGTGTGCAATCATGGTGGCCAAGTGCCTCCAGCCTCAGGCCTGTCCCcggggttcatccccaga a score=93554.0 s hg17.chr17_random 2459818 439 + 2618010 tgcccacagtgggggtcctaccattaacacaaacactgttgggattttctaccttttctgtctta-ctttcgccatttcctcacttgtgcttcctgggatcatcccccaaataaattatgtgcacccaggtatttttctcaaggtt-tgcattgggtagaatttaagttaagacaACAGATGATCAACAAACATTTTTGGCTGACTGATACGAAACTGGAAATAATAGTTATTTCAATCGACAAGAGTAAAACGAGGGAGTCAGGAG----GTGAAGGAGAACCAGTGCTACCATCTGGCGTTTACTTCCTTCCTGTCT--TTTTACT-GTGTGAATATAGGCATGCACGTTCAACACTGTATTC-------------CTGGTTATCTATAAACAAGTCTCATTCTATAAATTGAATCTTAACTTCCACAACTTTCCACATATGTTATTTATCAGATGACA s panTro1.chr19_random 18279585 439 + 57627672 tgcccacagtgggggtcctaccattaacacaaacactgttgggattttctacctttcctgtctta-ctttcgccatttcctcacttgtgcttcctgggatcatccctcaaataaattatgtgcacccaggtatttttctcaaggtt-tacattgggtagaatttaagttaagacaACAGATGATCAACAAACATTTTTGGCTGACTGATATCAAACTGGAAATAATAGTTATTTCAATCGACAAGAGTACAACGAGGAAGTCAGGAG----GTGAAGGAGAACCAGTGCTACCATTTGGCATTTACTTCCTTCCTGTCT--TTTTATT-GTGTAAATATAGGCATGCATGTTCAACACTGTATTC-------------CTGGTTATCTATAAACAAGTCTCATTCTATAAATTGAATCTTAACTTCCACAACTTTCCACATATGTTATTTATCAGATGACA s mm5.chr11 22346696 392 - 121648857 TGCCCACAGT-ATAATCTCATCATTAATACAAATGCT-TTGGGTTTTTCCTTCCTCTTTGGACCA-TTTTCCCCATTTCCTCTCTCGAACTTTCTGGGAT---------------------------GGAGTCTTTGTTCAAGGTTCTAGAGTGTATACAATTCAAGCAAAGTCAGGGGACGTTCAG-AAATATTTTCGCCTAATTG-----------------ATAGTT-TTCCTAGCAGTAAGAGTAAAACTGGGAAGTCTGGGGC--AATAAAAAAAAATAGGTGTTATGATTTGG---TTAGTGCCTCCCTTCCTACCCTTGCC-CTATGGCTGTAGACAAGTGAGTTGAGCAGTGTGTTT---------GTTGATGGACATCTGTAAACGAGTCTTCCCCTGCAAATCAAGT-----TTTCTGCAGCTTCCTGCACATAGCCTTTATGTGGTGACA s rn3.chr10 22131418 405 - 110733352 TGCCCACAGT-TTAATCTCATCATTAATACAAATGCT-TTGGATTTCCCCCCACTCTTTGGACCAGTTTTCCCCAATTCCTCTCTTGGACCTTCCAGGAT---------------------------GGAGTCTTTGTCCAGGGTTCTGTAGTGTGTGAAATTCAAGCAAAGTCAAAGGGTGTTCAG-AAATATTTTGGGCTAATTG-----------------ATAGTT-TTCCTAGCAGTAAGAGTGAAACTGGGAAGTCTGGGGCAAAAACAAAAAATATGGATGTTATGGTTTGG---TAAGTGCCTCCCCTCCTACCCCCACTCCCATGGCTGTAGACATGTTAGTTGAGCAGTGCACTCTCAGTGCACATTCATGGACGTCTGCAAACAAATCTTCCACTGCAAATCAAGG-----CTTCTGCAGCTTTCTACCCATAGCCTTTATCTGGTGAGA a score=2079.0 s hg17.chr17_random 2460257 41 + 2618010 TGTTACC-----TACCACGTAAATTAGTTTAGTCTTCCTGAAATG------------A s panTro1.chr19_random 18280024 41 + 57627672 TGTTACC-----TACCATGTAAATTAGTTTAGTCTTCCTGAAATG------------A s rn3.chr10 22131823 55 - 110733352 ---CACCCTCAGTGCCGCATAAGCAATATGAATATTTGGCTAATGGATTAGATAAATA a score=11228.0 s hg17.chr17_random 2460298 123 + 2618010 AATTATGATCTCTTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATATATACATTTT---------TAAAGGAC-CTTACATGCCTCTATGTCATCAA-AA-GCCttccttcactcaacaaaca s panTro1.chr19_random 18280065 124 + 57627672 AATTGTGATCTCTTTGTTTGGAATGTTTTCCTCTCTTTTATCCAGAAGTCAAAAGATATATACATTTT---------TAAAGGAC-CTTACATGCCTCTATGTCATCAA-AAAGCCttccttcactcaacaaaca s rn3.chr10 22131878 82 - 110733352 AATGGTGAC-------TTTTGAACTATTTCCTGTCTTTTCTCCA-----------ATACATAC----------------AATGGC-CCATCTTGC------------------GTTTCCATCTACTCCACAAACC s canFam1.chr9 14264392 125 + 53642819 AATCATATCACCATTGTCT-GAATATTCTTTTTTCTTTTCTCCA----TCC----ATATATATTATCTATAGTATGATAAAGGGTGAGTAAATGC-ACTATGTTTTCAATAAATCCCAcattcatttaattaaca a score=10792.0 s hg17.chr17_random 2460421 109 + 2618010 tttaccaccagtgttctctgtgctgagtatcatggtaacaagaataaatgccatagcccatgccttcagggtatttgcattgcacgtggtggaatgacagaagtaaatg s panTro1.chr19_random 18280189 109 + 57627672 tttaccaccagtgttctctgtgctgagtatcatggtaacaagaataaatgccatagcccatgccttcagggtatttgcattgcacgtggtggaatgacagaagtaaatg s canFam1.chr9 14264517 90 + 53642819 ttcattcagagtaat-----tgctaggcaccatgtttgtatatatgaataagacagtc--tggcctcatggagtat------------atagaaggactggaggaaaaa a score=5044.0 s hg17.chr17_random 2460530 30 + 2618010 -actatga------tacaggagaatgtaacaaattat s panTro1.chr19_random 18280298 30 + 57627672 -actatga------tacaggagaatataacaaattat s rn3.chr10 22131960 30 - 110733352 -ACTATCA------TGAAGTAGAATGTGCTGAGTTAG s canFam1.chr9 14264607 37 + 53642819 agatataagccaattatgttagagtgtgataccttat a score=1173.0 s hg17.chr17_random 2460560 4 + 2618010 gagc s panTro1.chr19_random 18280328 4 + 57627672 gagc s canFam1.chr9 14264659 4 + 53642819 gagc a score=368.0 s hg17.chr17_random 2460560 6 + 2618010 gagcac s canFam1.chr9 14264659 6 + 53642819 gagcaa a score=-534.0 s hg17.chr17_random 2460564 2 + 2618010 -ac s panTro1.chr19_random 18280332 2 + 57627672 -ac s mm5.chr11 22347231 2 - 121648857 -AC s canFam1.chr9 14264663 2 + 53642819 aa- a score=115120.0 s hg17.chr17_random 2460566 611 + 2618010 -aaggcaggaaa---tcatgatacatgaatggggtagcttagcaggaaagatattattgaggaggaaatattttaactgggtcttgacacatgagtaggagtttgcagagtggacaaaaaaagatgaaacattccaaga-agatgaagcagtttcagcaagcttagCAAATT-GTATTCTTTACGGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaaccttggacaagttgtttgtttgttttaagtttttaatgcttcttttgagtattcccctaaaagactaataagaatataa-actagttcataaggttgtat-taaagtgtgaa-aatgaaacaaatgtaa------gatatttggt--------------------------------------------acaatgcctgctacatagt-------------------------------------------------------caatacttcacaagtAATATACATACCATGAGGGTGTATGGAACTTATCCACATATTATACATTTTTTATTTTAGTTGTTTAATGAAAATAATTG---------TAATTCTTTTCA----GTTCTG--------CCAAACTGTTTCCTATC---CATGTGTCTTATGCAAGTACCTGCAAGAAAAAGATGAGGGTTTATCTGTTCTACACCCA-GAGTACCCAATAGAACATCTTGGATGCATGTT-------ATTGAAGGCT s panTro1.chr19_random 18280334 611 + 57627672 -aaggcaggaaa---tcatgatacatgaatggggtagcttatcaggaaagatattattgaggaggaaatattttaactgggtcttgacacatgagtaggagtttgcagagtggacaaaaaaagatgaaacattccaaga-agatgaagcagTTTCAGCAAGCTTAGCAAATT-GTATTCTTTACGGCTTTCTTGGCTACACTAAGACATATTAGGcttactttctctttaaccttggacaggttgtttgtttgttttaactttttaatgcttcttttgagtattcctctaaaagactaatacgaatataa-actagttcataaggttgtat-taaagtgtgaa-aatgaaacaaatgtaa------gatatttggt--------------------------------------------acaatgcctgctacatagt-------------------------------------------------------caatacttcacaagtAATATACATACCCTGAGGGTGTATGGAACTTATCCACATACTATACATTTTTTATTTTAGTTGTTTAATGAAAATAATTG---------TAATTCTTTTCA----TTTCTG--------CCAAACTGTTTCCTATC---CATGTGTCTTATGCAAGTACCTGCAAGAAAAAGATGAGGGTTTATCTGTTCTACACCCA-GAGTACCCAACAGAACATCTTGGATGCATGTT-------ATTGAAGGCT s mm5.chr11 22347233 608 - 121648857 -AAGGAGGG------TCATGACATGTGAGAGGGCCA-TTTAGCAGGACAGACACCACGCAGGAAAGAACATCTCTGTTGAGCCTTGATGGCTGAGCAG-------------------------------CATTCCAAGA-AGATAAAACACCTCCAGCAAAGGCTCCAAGCT-TAATTCTTCAT-TCTCCTTCTGCTACTCAGAGGCAGGTTCAGCTCACGTTGTGTTTCCTCTTGGGCAGATGTTTTG---ATTTTAGCCTCTCTGTGCTTCTTTAAGCTCCTCTATCAAAAGAAGAATGAG----TAG-AC---TTCATAGAACTGT----------TAAA-AACAGAAAAAATATAATCACACAATGTTTGATTCATGGTGACACTTTACAATTTATTCCCCCTAGACACAACCCACACAGTGTCTAATATGTAGG--------------------------------------------------------GACATTTTACAAACTACACTCCCACCA--AGAGTACATGGGACACATTCATATACTGCATA-TTTTGATTTTAGTTGCTTCATTTAAGTCATTGCATTAAGATTAAGTCTTAAT-----CTTGTG--------CCAAATGCTTCCCTCTG---CCTGTGTCCTATCCAACCACTCACA--GAAAGGAGTAAGGGCTACTTGTTCTGTGCTAA-GAACAGTCAGCAAAAACTCTTTCATATATATT-------GCCAAAGTCT s rn3.chr10 22131990 609 - 110733352 -AAGTTAGG--G---TCATGACATGTGAAGAGGGACGTTTAGCAGAACAGACACCGTGCAGGAGCAAACATCTCTGCTGAGTCTTGATGGGCGAGCAG-------------------------------CATTCCAAGA-AGATGAAACACCTCCAGCAAAGGCTGCAAGCT-TAATTCTTCAC-ACTCCCTCTGCTACTCAGAGGCAGGTTCAGCTCGCGTTGTGTTTCCTCTTGGCCAGATGTTTCG---GTTTTAGCCTCTCTGTGCTTCTTTAGTCCGCTCTATCAAAAGAAGAATGAA----TAGCAC---ATCAGAGAACTATGT--------TAAA-AACAAAAGAAATACAA------TACAATCAC---------------------------------------------AAAGTGCCTGATACATAGTTACACTTTACAAACTATATCCCCTACACACAGCACACACAGGGTCAAATGTGTAGCAACATTTTACAAACTACACCCCCACCA--AAGGTACGTGGAACACATTCAAATACTGCACA-TTTTGATTTTAATTATTTCATTAAAGTCATTG---------GAATTTTTTAT-----CTTGTG--------CCAAATGGCTCCCTCTG---ACTGTGTCTTTTCCAACCACTCACA--GAAAGGAGTGAGGGTTACCTGCTCTATGCCTA-GAATAGCCAGCAGAAACTCCTGCACATATATT-------GCCAAAATCT s canFam1.chr9 14264665 589 + 53642819 aagggaaagaaagattcat----tttgaatggggta-gatgtcaagaaagacattagaaatgagttgatatccagactagacatttatatatgagcaagagttagttaaattgacaagggagaaag---cacattaacacaaatgaaacagtatgaggaaggacATGGGATTATTACTCCTCAT-AAGTCTTTGAATATTCTAGGAAAGAACCA----------TCTTCCTTATTGACTACATG--------ATTtcaatctatctaagcctcagttacctcatgt-ctgaagaattaagaaaaatcctg-accacctcttagaagcccctgtgaagtataaataaggtaacaattacag------aagactcag---------------------------------------------aaaattcctgacacacaac-------------------------------------------------------aggcac-tcaaaaatagta----------------attttTAGCATTATCTCATATTTCATA------AGTGTATACATTTAAATACA-TAATTG---------TTATTTATCACACAATGTTCTACATGCTTTCCAAACCCCTACATATGTGTTCTTTGTCTTATTGAAGTGCCTATAGGACACAAATTAAAGCTTAACTCCTTAGATCTCATTTATATCAAGCAAAATACCTCAAACATAACTTTTTGAGAGACAAAAGCT a score=-31.0 s hg17.chr17_random 2461177 1 + 2618010 T s canFam1.chr9 14265254 1 + 53642819 C a score=273.0 s hg17.chr17_random 2461177 1 + 2618010 T s panTro1.chr19_random 18280945 1 + 57627672 T s mm5.chr11 22347841 1 - 121648857 T a score=4047.0 s hg17.chr17_random 2461178 28 + 2618010 --AATAATTCTAAATATTCTTCATATATAA s panTro1.chr19_random 18280946 28 + 57627672 --AATAATTCTAAATATTCTTCATATATAA s canFam1.chr9 14265255 26 + 53642819 AGAATA----TAAATATTCAACACACATAT a score=6143.0 s hg17.chr17_random 2461206 46 + 2618010 CAAATGCTTTTGT----------AAATGAAAAATGCATCACGCAATTTTGATGATC s panTro1.chr19_random 18280974 46 + 57627672 CAAATGCTTTTGT----------AAATGAAAAATGCATCACGCAATTTTGATGATC s rn3.chr10 22133333 45 - 110733352 TGAATGCCTTAGT----------GAGCAAAAAATCTACTATGCAGTTTC-ATGATT s canFam1.chr9 14265282 56 + 53642819 CAATTGGGTATATTCATCTACCAAAATAAGAGAAAAAACACTCCTTTATGATACCC a score=518.0 s hg17.chr17_random 2461252 13 + 2618010 AAAGATTAATCAg s panTro1.chr19_random 18281020 13 + 57627672 AAAGATTAATCAg s rn3.chr10 22133378 10 - 110733352 AAACAATGAA--- a score=26555.0 s hg17.chr17_random 2461265 302 + 2618010 gctgggtgttgggggctcacgcctgcaatcccaacactttgggaagcaaaggcgggtggatcatgaggtcaagagatcaataccatcttggccaacatggtgaaaccctgtctctactaaaaatacaaaagtaagctgggtgtggtggcacacacctgtagtcccagctactcggaaggctgaggaaaaggaactgcttgaacccaggaggtggaagttgcagtgagccgagatcatgccactgtactccagcctggtgacagagggagaccccgtcagaaaaaaaaaaaaaaaaagataaa s panTro1.chr19_random 18281033 299 + 57627672 gctgggtgttggtggctcacgcctgcaatcccaacactttgggaagcaaaggcaggtggatcatgaggtcaagagatcaagaccatcttggccaacatggtgaaaccctgtctctactaaaaatacaaaagtaagctgggtgtggtggcgtacacctgtagtcccagctactcggaaggctgaggaagaggaactgcttgaacccaggaggtggaagttgcagtgagccgagatcatgccactgtactccagccaggtgacagagggagactctgtcagaaaagaaaaaaaaa---gataaa a score=11705.0 s hg17.chr17_random 2461567 39 + 2618010 TCAAAACTTCCTACTCTTAATGCCTATACTGTAAGAAAT s panTro1.chr19_random 18281332 39 + 57627672 TCAAAACTTCCTACTCTTAATGCCTATACTGTAAGAAAT s mm5.chr11 22348859 39 - 121648857 TAAAATTTCCCCACTCTTAATCGTTCTTCAGAAAGACAT s rn3.chr10 22133388 39 - 110733352 TAAAATCTCCCCACTCTTATTCGTTCTTCAGAAAGACAT a score=62848.0 s hg17.chr17_random 2461606 263 + 2618010 ACAGCAAAA-----TGTGTTTTTACCCTTTAAAGGCAG-TGAGTCATGGG--TAAGTACTTTTGCTGGAGGCTGTGGAATAAGATCTGACAAAGAGTTTAGAACTTGTTGGGA--TCTGACCATCTGCCCGACCATCCGAGATGCACACACGGGATCAGAGTCATCCTCATTACAGATGGGAGATC-----------CTTCCACAAATGAGTCCTTCCTTCTAATTCCTTCCCAACATTTCACCTGACCAGGACGTTCTTTGACAATGAAAGATACA-TTCACAT s panTro1.chr19_random 18281371 263 + 57627672 ACAGCAAAA-----TGTGTTTTTACCCTTTAAAGGCAG-TGAGTGATGGG--TAAGTACTTTTGCTGGAGGCTGTGGAATAAGATCTGACAAAGAGTTTAGAACTTGTTGGGG--TCTGACCATCTGCCCGAACATCCGAGATGCACACACGGGATCAGAGTCATCCTCATTACAGATGGGACATC-----------CTTCCCCAAATGAGTCCTTCCTTCTAATTCCTTCCCAACATTTCACCTGACCAGGACATTCTTTGACAACAAAAGATACA-TTCACAT s mm5.chr11 22348898 255 - 121648857 ACAAAAAAA----CTGAGTTTCTATTATTTCTAGGTAGTTGCACCACTGC--CAAGCTCTTCGACTTAAGAGACTGGAATGAGATCTGATAA----TTTAGAATGTTCTCAGG--TCTGCACATTTCCCAGATCCTCT--AATGGACACACAAAATCACCATCATTCTCATGAAAGATGGACAGTC-----------TCCTTCTAAATG-GCCTTTCCTTCTAACTCCTTCT---AATCTCACCTGGGAGGAACACTCCTTGATAGCAAAAGGCATA-CTGGAAT s rn3.chr10 22133427 261 - 110733352 ACAAAAATAATAATTGAGTTTCTATTATTTCTAAGTGGTTGCACCACTGC--CAAGCTCTTTGACTTAAGATAGTGGAGTGAGAGCTGACAA----TTTAGAATGTTCTCAGG--CCTGCTCATCTCCCAGATCCTCT--ACTGGACGCACAAAGTCACCATCGTCCTCATGAGAGATGGACAGCC-----------TCCTTCTAAACA-GTCTTTCCTTTTAACTCCTTCCTG-AATCTCGCCTGGAATGAACATTCCTTGACAGCAAAAGGCATA-CTGGATT s canFam1.chr9 14265390 271 + 53642819 ATGCCAATG-----AGTTTTTTTACTGTGTAAAAGTAG-TGAATCATTACATTATAACTTTCAAATCGAATAGATTCAATAAGACAAAAGAG----ATAGGTACTTTGCTAGGATTTTTTATACCTCACTGACCATCA--TAAAATCCAAAGGAATCACAGTATTCCCCACTGAACATAAGTGATTGCCCGCCCCCGCCCCCCAAGATGGCTCTTTCACCCTATTTTCCTACCAGCCTTTCATATGACTTGTTAACCTCTTGGC--TAGAAGATTTAGTTGACAT a score=0.0 s hg17.chr17_random 2461869 3 + 2618010 TAT a score=-744.0 s hg17.chr17_random 2461869 1 + 2618010 T- s panTro1.chr19_random 18281634 1 + 57627672 T- s mm5.chr11 22349153 1 - 121648857 T- s rn3.chr10 22133688 2 - 110733352 TT a score=302.0 s hg17.chr17_random 2461870 2 + 2618010 AT s panTro1.chr19_random 18281635 2 + 57627672 AT s rn3.chr10 22133690 2 - 110733352 GT a score=1646.0 s hg17.chr17_random 2461872 27 + 2618010 AAAAATCGTCCCC--CATTATTTGCAGAC s panTro1.chr19_random 18281637 27 + 57627672 AAAAATCATCCCC--CATGATTTGCAGAC s rn3.chr10 22133692 27 - 110733352 GAAAGATTATTTC--TATGATTTGCAAGG s canFam1.chr9 14265661 28 + 53642819 AAAATCCATTCTCAACATATTATCCTGG- a score=26061.0 s hg17.chr17_random 2461899 77 + 2618010 AGCAATCTACAGGTAGGAGGGAGAGTCATATTT---------AAAAACAAAATGTCA---GAGAGTCCTGTGACCAGTGCTTTGTAAAA s panTro1.chr19_random 18281664 77 + 57627672 AGTAATCTACAGGTAGGAGGGAGAGTCATATTT---------AAAAACAAAATGTCA---GAGAGTCCTGTGACCAGTGCTTTGTAAAA s mm5.chr11 22349181 78 - 121648857 AGGAATGTACGGATGGAAGGGAATGCCACGTTTA--------AAAAACAAAATGCCA---GAGAGTCCTGTGACAAGTTACTTGTAGCA s rn3.chr10 22133719 78 - 110733352 AATGGTGTTCAGATGGGGGAGAATGTCATATTTG--------GAAAACAAAATGCCA---GAGAGTCATGGGACAAGTTACTCGCAACA s canFam1.chr9 14265689 77 + 53642819 AGTTAAATACA--TAAATGAGGATTTAACACTTGTAAAATCCAAAGAAATAATGTCATAGGAGAGT----------GTACTTTGGAAGA a score=2309.0 s hg17.chr17_random 2461976 21 + 2618010 GACACTGCAT-AGACCAGGGAC s panTro1.chr19_random 18281741 21 + 57627672 GACACTGCAT-AGACCAGGGAC s canFam1.chr9 14265766 17 + 53642819 -----CACATCAGACAAGGAAA a score=145.0 s hg17.chr17_random 2461976 21 + 2618010 GACACTGCAT-AGACCAGGGAC s canFam1.chr9 14265766 17 + 53642819 -----CACATCAGACAAGGAAA a score=410.0 s hg17.chr17_random 2461997 34 + 2618010 --------AAAGGTGACCCCC---------ACCAAGGAAGAAATATGACAA s panTro1.chr19_random 18281762 34 + 57627672 --------AAAGGTGACCACC---------ACCAAGGAAGAAATATGACAA s rn3.chr10 22133797 23 - 110733352 --------ACAAGTG--------------------GAAAAAAATGCAAGCA s canFam1.chr9 14265783 51 + 53642819 AAAATATGGAAGCTGATTCACTTGGTTTTAACCAAATCAGATAGCTCACAA a score=3696.0 s hg17.chr17_random 2462031 22 + 2618010 GCATTTCCAATGGAAACACAGG s panTro1.chr19_random 18281796 22 + 57627672 GCATTTCCAATGGAAACACAGG s rn3.chr10 22133820 22 - 110733352 GTGTTTTAGTTGCAAATACAGG a score=2007.0 s hg17.chr17_random 2462053 7 + 2618010 AGCACAG s panTro1.chr19_random 18281818 7 + 57627672 AGCACAG s rn3.chr10 22119002 7 - 110733352 AACAATG s canFam1.chr9 14253856 7 + 53642819 AACACTG a score=16018.0 s hg17.chr17_random 2462060 90 + 2618010 CAGGAAAAGA-AAATGAGTTATTTTCTCTGTTTTGGAGTATTTAACTAGAAACACACAATGATG---TAATTACA-TGATTAATTTTTTCAGTAG s panTro1.chr19_random 18281825 90 + 57627672 CAGGAAAAGG-AAATGAGTTATTTTCTCTGTTTTGGAGTACTTAACTAGAAACACACAATGATG---TAATTACA-TGATTAATTTTTTCAGTAG s mm5.chr11 22204646 88 - 121648857 CAGGAAAAGA-AACTGTGTT-TTCCATCTACCTT-GATAATTTAGCCAGGAAATGGAACTTGCC---TAATTTGA-TAACCACATGTTTATTAAC s rn3.chr10 22119009 94 - 110733352 TAGAGAAAGA-AAATGATGCTCTTTCTAAATGCTGGAATATTTAACCTTGCAAACATGATTATGCCTTAATAACACTAATTAATTTCCTGGTTAG s canFam1.chr9 14253863 89 + 53642819 CAGAAAAGGGTAAATTATGCTTTACTTAGATATTGGCATATTTAACCTGATAAACACGATTAT----TAGTAACACTAATTG--TTTCCTGGTAG a score=-1284.0 s hg17.chr17_random 2462150 2 + 2618010 -GT s panTro1.chr19_random 18281915 2 + 57627672 -GT s mm5.chr11 22204734 2 - 121648857 -AC s canFam1.chr9 14253952 2 + 53642819 GA- a score=28473.0 s hg17.chr17_random 2462152 78 + 2618010 AAATAATAACAAGGAAATAATG----ACGTGGTGGCAACGGGCCTTCAGGCGGGTAT-AAAGGGGCTATGGACCCAGGAA-----ACT s panTro1.chr19_random 18281917 78 + 57627672 AAATATTAACAAGGAAATAATG----ACGTGGTGGCAACGGGCCTTCAGGAGGGTAT-AAAGGGGCTATGGACCCAGGAG-----ACT s mm5.chr11 22204736 88 - 121648857 AAACAATAACAAGGAAAGAATGCTGCATGTGAGGACAGCAGCCCCTCAGCAGGGTATAAAAGGGGACATGGGCAGGGAGACTCTCACT s rn3.chr10 21988799 88 - 110733352 AAACAATAACAAGGAAAGAATGCGGCATGTAAGGACAGCAGCCCCTTGGCAGGGTATAAAAGGGGATGTGAGCAGGGAGACTCCCACT s canFam1.chr9 14253954 75 + 53642819 --AAAACAACAAG-----AATGTTGCTCATAGTAACATCAACTACTCAGCAGAGTATAAAAGGGGACAGAGGTAAGGAA------ACA a score=56934.0 s hg17.chr17_random 2462230 127 + 2618010 TCCAAACTCAAGAACT---TTACTCTCTTGG---AAACCCAAATAGATC----------------CTTCACCCTCTGACACCAATGGTCAACTCCTGTTGTGGCTCCGTGTGCTCTGA--CCAAGGCTGTGGCCAAGA---CCTCTGCCAGGAG s panTro1.chr19_random 18281995 126 + 57627672 GCCAAACTCAAGAACT---CTACTCTCTTGG---AAACCCAAATAGATC----------------CTTCACCCTCTGACACCA-TGGTCAACTCCTGTTGTGGCTCTGTGTGCTCTGA--CCAAGGCTGTGGCCAAGA---CCTCTGCCAGGAG s mm5.chr11 22204824 121 - 121648857 TCCAAACCTTCCAAC----CCACCTTGTTGT---AAACCTACCAAGAAC----------------CTCCA-CCTCTAACACCA-TGGTCAGTTCCTGTTGTGGCTCTGTCTGCTCTGA--GGAGGGCTGTGGCCAAGG---CTGCTGCCAG--- s rn3.chr10 21988887 121 - 110733352 TCCAAACCTTCCAAC----CCACCTTCTTGT---AAACCCATCCAGAAC----------------CTCCA-CCTCTGACACCA-TGGTCAACTCCTGTTGTGGCTCTGTCTGCTCTGA--GGAGGGTTGTGGCCAAGG---CTGCTGCCAG--- s canFam1.chr9 14254029 144 + 53642819 TTCAAAGTCAAGAAA----CCACCCTAGTGG---AAACCCACTCAAATCCACCTGTGGAACCCAACTCCTTTCACTGACACCA-TGGTCAACTCCTGTTGTGGCTCCGTCTGCTCTGA--CCAGAGCTGTGGCCAAGAGACCTGCTGCCGTCCC s danRer1.chrUn 291621744 128 + 367113659 TTCCATCTCCAGAACCGTGCGTCTGTGTTGGCTCCAGCCCCAGTACATG----------------CT----CCTCTGACTTCAACTATCGCCCCCTCCTCTCACTCGGGGAGACCAGGATGGAAGGTCCTGCCCCTGC---CAGCCCCCAG--- a score=126909.0 s hg17.chr17_random 2462357 240 + 2618010 AC------------------------------------------------------------CTG-----------------CTGCTGC--------------------------------------------------------------CCCAGCTGCTGTCAGACCACCTGCTGCAGGACCACCTGCTACCGCCCCAGCTACAG---TGTGTCCTGCTGCTG---------------------------------------------------------------------------CAGACCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGATGCTGCATCTCCAG---------------------------------------------------------------------------------------CTGCTGTCGCC---------------CCAGCTGCTGTGTGTCCAGCTGCTGCAAGCCCCAG-------------------------------TGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCACCCT s panTro1.chr19_random 18282121 240 + 57627672 AC------------------------------------------------------------CTG-----------------CTGCTGC--------------------------------------------------------------CCCAGCTGCTGTCAGACCACCTGCTGCAGGACCACCTGCTACCGCCCCAGCTACAG---TGTGTCCTGCTGCTG---------------------------------------------------------------------------CAGACCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACctgctgccgccccagatgctgcatctccag---------------------------------------------------------------------------------------ctgctatcgcc---------------ccagctgctgtgtgtccagctgctgcaagccccag-------------------------------tgctgccagtctgtgtgctgccagcccacctgctgccgccct s mm5.chr11 22204945 315 - 121648857 -------------------------------------------------------------------------------------------------------------------------------------------------------CCCAGCTGCTGCCAGACCACCTGCTGTAGGACCACCTGCTGCCGCCCCAGCTGCTG---TGTGTCCAGCTGCTG---------------------------------------------------------------------------CAGACCCCAGTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGTCGCCCCAGCTGCTGCATTTCTAGCTGTTGTAGACCTTGCTGCCGCCCCACCTGCTGTGTGTCCAGCTGCTGCAGGCCTTCTTGCTGCATTTCTAGCTGCTGTAGGCCTTCCTGCTGCCGCC---------------CCAGCTGCTGTGTGTCCAGCTGCTGCAGGCCTCAG-------------------------------TGCTGCCAGTCTCTGTGCTGCCAGCCCACCTGCTGCCGCCCC s rn3.chr10 21989008 243 - 110733352 -------------------------------------------------------------------------------------------------------------------------------------------------------CCCAGCTGCTGCCAGACCACCTGCTGTAGGACCACCTGCTGTCGTCCCAGCTGCTG---TGTGTCCAGCTGCTG---------------------------------------------------------------------------CAGACCTAGCTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGCCGCCCCAGCTGTTGCATTTCTAG------------------------------------------------------------------------CTGCTGCAGGCCTTCCTGCTGCCGCC---------------CTAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCCAG-------------------------------TGCTGCCAGTCTGTGTGCTGCCAGCCTACCTGCTGCCGCCCC s canFam1.chr9 14254173 420 + 53642819 ACATGCTGTGGTTCCAGCGGCTGTGGCTCCAGCTGCTGCAGGCCCAGCTGCTGCATCTCTAgctg-----------------ctgccgc--------------------------------------------------------------ccctcctgctgccagaccacctgctgcaggaccacctgctgccgccccagctgctg---tgtgtccagctgctgccgcccctcctgctctagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctgcCAGACCACCTGCTGCAGGACCACCTGCTGCCGCCCCAGCTGCTGTGTGTCCAG---------------------------------------------------------------------------------------CTGCTGCCGCCCCTCCTGCTCTAGTTCCAgctgctgtggctccagctgctgcaggcc-cagctgctgcatctctagctgctgccgccccacctgctgccagaccacctgctgcaggaccacctgctgccgcccc s fr1.chrUn 303308103 213 + 349519338 ------------------------------------------------------------AGCTG-----------------CTGCTGC--------------------------------------------------------------TGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCT---ACTGCTG---TAGCTGCTGCTGCTG---------------------------------------------------------------------------TAGCTGCTGCTGCTGTA---------GCTGCTACTACTGCTGCTGCTGCTGTAGCTGCTGCTGCTACTG---------------------------------------------------------------------------------------CTGTAGCTGCT---------------GCTGCTGCTGT------AGCTGCTGC----------------------------------------TGCTACTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTGC s danRer1.chrUn 291621872 307 + 367113659 -----------------------------------------------------CCCGTCTCCTTGCCCTGCCGGCCCCAGCCCTGCTCCTTGCCCCGCCAGCCCAGCTCCTCGCCTTACCAACGCCACCCAGACGTCTTGCCCAGCTCCAGTCCAGCTGCCTCCAGCCCAGCCGCTCCAGT----CCAGCTGCCTCCAGAACCGCCGGCTCCTGTCCAGCTGCCT---------------------------------------------------------------------------CCAGCCCCACCGGCTCCCATCCAGCTCCCTCCAGCC------CTGCCG-----GCTCCTG----TCCAT---------------------------------------------------------------------------------------TTGCCTCCAAC---------------CCCGCCGGTTCCTGTCCACCTGCCTCCAGCTCTGC-------------------------------CGATTCCAGTCCAGTTGCCTCTCATCCA---GCTGGCTCCCC a score=1740.0 s hg17.chr17_random 2462597 2 + 2618010 Ag s panTro1.chr19_random 18282361 2 + 57627672 ag s mm5.chr11 22205260 2 - 121648857 AG s rn3.chr10 21989251 2 - 110733352 AG s canFam1.chr9 14254593 2 + 53642819 ag s danRer1.chrUn 291622179 2 + 367113659 AC a score=5423.0 s hg17.chr17_random 2462599 10 + 2618010 ctgctgcatc s panTro1.chr19_random 18282363 10 + 57627672 ctgctgcatc s mm5.chr11 22205262 10 - 121648857 CTGTTGCATT s rn3.chr10 21989253 10 - 110733352 CTGTTGCAGG s canFam1.chr9 14254595 10 + 53642819 ctgctgtgtg a score=67122.0 s hg17.chr17_random 2462609 162 + 2618010 tcc----------------------------------------------agctgctgcc------------------gcc---------------ccagctgctgtgtgtccagctgctgcaagccccagtgctgccagtctgtgtgctgccagc------------------------------ccacctgctgccaccctagctgcagcatctccagctgctgccgcccctcttgctgtgaatccagc---------------------------tgctgccgcccctgctgctgc s panTro1.chr19_random 18282373 226 + 57627672 tccggctgctgtcgccccagctgctgtgtgtccagctgctgcaagccccagctgctgccagtctgtgtgctgccgtcgcc---------------ccagctgctgtgtgtccagctgctgcaagccccagtgctgccagtctgtgtgctgccaac------------------------------ccaactgctgccaccccagctgcagcatctccagctgctgccgcccctcttgctgtgaatccagc---------------------------tgctgccgcccctgctgctgc s mm5.chr11 22205467 161 - 121648857 TCC----------------------------------------------AGCTGCTGCC------------------GCC---------------CCAGTTGCTGTGTGTCCAGCTGCTGCAGACCCCAGTGCTGCCAGTCTCTGTGCTGCCAGC------------------------------CCACTTGCTGCCGCCCCAGCTGCTGCCGCCCCAGCTGTTGCATTTCTAGCTGCTGCAGACCTTCT---------------------------TGCTGCCGCCCCAGCTGCTG- s rn3.chr10 21989263 173 - 110733352 ----------------------------------------------CCTTCCTGCTGCC------------------GCC---------------CTAGCTGCTGTGTGTCCAGCTGCTGCAGGCCCTCTTGCTGCATCTCCA---GTTGCCGCC------------------------------CCTGCTGTGGTAGTTCTAGCTGTTGTGGATCCAGCTGCTGCCGTCCCGCCTGCTGCATTTCTAGCTGTTGCAGGCCT------------TCTTGCTGCCGCCCCAGCTGCTG- s canFam1.chr9 14254605 234 + 53642819 tcc----------------------------------------------agctgctgcc------------------gcccctcctgctccagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctccagttccagctgctgtggctccagctgctgcaggcccagctgctgcatctctagctgctgccgcccctcctgctgtggctccagctcctgtggctctagctgctgccgcccctcctgctgcccctcctgctgc a score=24875.0 s hg17.chr17_random 2462771 84 + 2618010 GTGCGTCCAGTCTGTGGCCGAGTCTCCTGCCACA----------------CCACTTGCTATCGCCCAACCTGT------GTCATCT---------CCACCTGTCCCCGCCCCGTG s panTro1.chr19_random 18282599 84 + 57627672 CTGCGTCCAGTCTGTGGCCGAATCTCCTGCCACA----------------CCACTTGCTATCGCCCAACCTGT------GTCATCT---------CCACCTGCCCCCGCCCCATG s mm5.chr11 22205628 100 - 121648857 -TGTGTCCAG-CTGCTGCAGGCCCCAGTGCTGTAT-------------CTCCAGTTGCTGCCGCCCGACCTGTTGCGAGACCACTTGCTGCAGAACCACCTGTTGTCGCCCAGCA s rn3.chr10 21989436 85 - 110733352 -TGTGTCCAG-CTGTTGCAGACCCCAGTGCTGCAC-------------CCCCACCTGCTGCCAGACTACCTGT------TGCAGGA---------CCACCTGCTGCCGCCCATCA s canFam1.chr9 14254839 84 + 53642819 cTGCGCCCAGTCTGTGGCCGGGTCTCCTGCCACA----------------CTACCTGCTATCGCCCCACCTGT------GTCATCT---------CCACCTGCCCCCGTCCCATG s danRer1.chrUn 291622181 95 + 367113659 AGACCTCCTGCCT-----TGTCTCTCCTGCTGGATTGTCCCTGGGTCATCTCTCCCACTCCTCCCTGGTGTGC------CTCTCCA---------CCACTCGGGACGGACCCTTC a score=19991.0 s hg17.chr17_random 2462855 37 + 2618010 TGCTGCGCCTCCTCTTGCT---------------------GCTGAGCCCA--CTGCCCTG s panTro1.chr19_random 18282683 37 + 57627672 TGCTGTGCCTCCTCTTGCT---------------------GCTGAGCCCA--CTGCCCTG s mm5.chr11 22205728 39 - 121648857 TGCTCTAGTGGTTCTTGCT---------------------GCTGAACCCCGTCACCCATG s rn3.chr10 21989521 37 - 110733352 TGCTCCAGTGGTTCTTGCT---------------------GCTGAGCACT--GTCACCCA s canFam1.chr9 14254923 37 + 53642819 TGCTGTGCCTCCTCTTGCT---------------------GCTGAGCCCC--CTGCCCTG s fr1.chrUn 303308316 58 + 349519338 TGCTGTAGCTGCTGCTGCTGTAGCTGCTGTTTTGATGTGGGCTGTGCTTA--CTGCTCTG s danRer1.chrUn 291622276 37 + 367113659 GGCTACACTCTGGTTCCCT---------------------GCCGGGGCCC--CTGACCTG a score=3465.0 s hg17.chr17_random 2462892 29 + 2618010 ----GCTCATC-TC-TCCCTTCGCCGCTGGTCCAC s panTro1.chr19_random 18282720 29 + 57627672 ----GCTCATC-TC-TCCCTTCACCGCTGGTCCAC s mm5.chr11 22205767 28 - 121648857 ----GTCTCTC-CT-GTTCTTCATCACC-CTCCAC s rn3.chr10 21989558 26 - 110733352 ----GTCC--C-CT-GTTCTTCATAACCC-TCCAC s canFam1.chr9 14254961 30 + 53642819 ----GACCACCACC-TCTGTTTACCTCTGCCCCAC s danRer1.chrUn 291622313 34 + 367113659 CTGAACCCACC-CTGGACCTTCCCTCCTGATCCAC a score=613.0 s hg17.chr17_random 2462892 29 + 2618010 GCTCATCTCTC------CCTTCGCCGCTGGTCCAC s danRer1.chrUn 291622313 34 + 367113659 -CTGAACCCACCCTGGACCTTCCCTCCTGATCCAC a score=7597.0 s hg17.chr17_random 2462921 14 + 2618010 ---AAATGTAGACCATT s panTro1.chr19_random 18282749 14 + 57627672 ---AAATGTAGACCATT s mm5.chr11 22205795 17 - 121648857 TTGTGATGTAAAGCATT s rn3.chr10 21989584 17 - 110733352 TTGTGATGTAGACCATT s canFam1.chr9 14254991 14 + 53642819 ---AGACGTAGACTCTT a score=0.0 s hg17.chr17_random 2462921 53 + 2618010 AAATGTAGACCATTCTTCTGTGCTGAATATTAGGACACATGGAGTGGGATTGA a score=300.0 s hg17.chr17_random 2462935 1 + 2618010 C s panTro1.chr19_random 18282763 1 + 57627672 C s mm5.chr11 22205812 1 - 121648857 C a score=0.0 s hg17.chr17_random 2462935 1 + 2618010 C a score=1020.0 s hg17.chr17_random 2462936 6 + 2618010 TTCTGT s panTro1.chr19_random 18282764 6 + 57627672 TTCTGT s canFam1.chr9 14255005 6 + 53642819 TTTGGT a score=10365.0 s hg17.chr17_random 2462942 32 + 2618010 GCTGAATATTAGGACACATGGAGTGG-----GATTGA s panTro1.chr19_random 18282770 32 + 57627672 GCTGAATATTAGGGCACATGGAGTGG-----GATTGA s mm5.chr11 22334251 36 - 121648857 GTTGGCGACAGGGGCATACAGAGTCATA-TCGATGGA s rn3.chr10 22119821 37 - 110733352 GTTGGCTACAAGGGCATACAGAGTTGTATTCGATGGA s canFam1.chr9 14255011 32 + 53642819 GCTCACCATTAGGACACATGAAGTGG-----GGTTAG a score=11741.0 s hg17.chr17_random 2462974 140 + 2618010 TGTCATTCAGCAGGGTGG-ACCTCATGTATCCAATGAGC-------CCATCACCATCCCGCTGACTCTGTG-AGAACATTCTGG-TTCATTTTAAACTCCCTCCCTTGCTTTATTTTTCTTCCA-GTCATGGCACCAAATACGAATTAATT s panTro1.chr19_random 18282802 140 + 57627672 TGTCATTCAGCAGGGTGG-ACTTCATGTTTCCAATGAGC-------CCATCACCATCCCGCTGACTCTGTG-AGAACATTCTGG-TTCATTTTAAACTCCCTCCCTTGCTTTCTTTTTCTTCCC-GTCATGGCACCAAATACGAATTAATT s mm5.chr11 22334287 114 - 121648857 TGTTGTTTTGCTGAGTAACATCTCTATATTTCATTGGAC-------CCAACA--------ATGGCT-----------ATTCTAGCTTCAATCCACATTCTTTA---TGTGGACCTTTCCTTCC----CATAG----AAGTGTGAATTAGCT s rn3.chr10 22119858 111 - 110733352 TG---TTTTGCTGAGTTACATCTCTGTATTTTATTGGAC-------CCACCA--------GCAGCT-----------ATTCTAGCTTCAATCCAAATCCCTCA---TGTGCACCTTCGCTTCC----CATTA----AAGTGTGAATTTGCT s canFam1.chr9 14255043 132 + 53642819 TAATGCTCCACTGAGTTGGGTCTCACGATTCCAACGAGC-------CCATCACTGTCCCACTGACTCTGTA-AGCATATTCTGGCCTCAGTCCAAATTCTACT---TCTGGATCTTTCCCTTT----CATTC----AAGTATGAATTTCCT s fr1.chrUn 303308374 133 + 349519338 --------TGCTAATGTGCAGCTCGGAGCTCAATCACGCCACCTCGCTAACATCCTCCTGTGGGCTCTGTGTCGTTGATCCTCG--TGACCTTTAACCCCC-----TGTCTCACATTCATTCCCTGTAATGT--CTGAGCA-GAATTAATT a score=7259.0 s hg17.chr17_random 2463114 15 + 2618010 TGTAATCCACTAGCT s panTro1.chr19_random 18282942 15 + 57627672 TGTAATCCACTAGCT s mm5.chr11 22334401 15 - 121648857 TCTACTGCACCAGCT s rn3.chr10 22119969 15 - 110733352 TCTACTGTACTAGCT s canFam1.chr9 14255175 15 + 53642819 TACAATATACCAACT a score=1982.0 s hg17.chr17_random 2463129 7 + 2618010 AAGAAAT s panTro1.chr19_random 18282957 7 + 57627672 AAGAAAT s rn3.chr10 22119984 7 - 110733352 GCTAAAT s canFam1.chr9 14266927 7 + 53642819 AAAAAAT a score=16416.0 s hg17.chr17_random 2463136 82 + 2618010 AATTCCAATCCTCTAAATTCCTCATTTTTTAAAATCATTTTGAGCCTACAGAATATCCTTCCCAATTAGGTACACATTATCT s panTro1.chr19_random 18282964 82 + 57627672 AATTCCAATCCTCTAAATTCCTCATTTTTAAAAATCATTTTGAGCCTACAGAATATCCTTCCCAGTGAGGTACACATCATCT s rn3.chr10 22134905 70 - 110733352 TACCCCAAGTCACCAAATT------------GATTGGCCTCGTAGCTCTAAATTATTCTTCCTAGTAAATCAGACATTTTCT s canFam1.chr9 14266934 79 + 53642819 TATCCCATTCCTCTAAATTTGTCATTCTTCCTTATCACTTTGGGGCTCTAGATTATCCTTCCTAACAAAATG---ATTATCT a score=16900.0 s hg17.chr17_random 2463218 186 + 2618010 CCCTTTCAAACATACTATTTGTCTGTCAGCCTTTCAGTCATTCTTTTCTTTTGGAAAGGTAGGAGGCTGCCCCTCCCGTGCTCTCCCGCTTTCTCCCTGCTCCCTCTTTCTCTCACTGTTCAAGTTTGCCAGAATTTTTCTATTTTATTAGTTCTTTATCTTTATTGTGTTCACAAAATATATTGT s panTro1.chr19_random 18283046 186 + 57627672 CCCTTTCAAACATACTATTTGTCTGTCAGCCTTTCAGTCATTCTTTTCTCTTGGAAAGGTAGGAGGCTGCCCCTCCCGTGCTCTCCCGCTTTCTGCCTGCTCTCTCTTTCTCTCTCTGTTCAAGTTTGCCAGAATTTTTCTATTTTATTAGTTCTTTATCTTTATTGTGTTCACAAAATATATTGT a score=6006.0 s hg17.chr17_random 2463404 48 + 2618010 ATTAAACTTTTCATTTAGAAATCTTTTATTGTTTTTTGCATTTTTTGT s panTro1.chr19_random 18283232 48 + 57627672 ATTAAACTTTTCATTTAGAAATCTTTTATTGTTTTTTGCATTTTTTGT s danRer1.chrUn 291622785 48 + 367113659 ACTGCACAATTTCATTAAAAAACTGCACTTGAATCTAACACCTTTTGT a score=184453.0 s hg17.chr17_random 2463452 2045 + 2618010 GATAATTTTCACTGAGTTTACTGATTCATGGGGGTGAGGTGGGAATGCAGTAGAA-GGGGATTCTCAAAGCATGATTCCAAAGTAAGACTTCAGGGATGAAATCATAGTGCCAAACTGCTCCAATGTCACACATAAACTAAAATAAAATAGAAGCTTTTGATTGTTTCAATTTGATATACGGAATGGTTTGGGATATGTATAACCCCTAGTAATGTCACAGATAAACTAAAATAGAAGAGAAGCTT-TTCATTGTTTCAATTTGATATACGGAATGCTTTGGGATAGGTAAAGCCCCCAGTATTGTTGTTTGTAAGTTCATCCATTATTTTAGAACTTATGATATCATGGTAATACTCCTCACTCTTCTGTGTGAAATTTAAAAAGTACATCTCATCCTACTGCATTCCATCTTGATTCAAATCAGTTAAGGCAGACTCCAAATGTTATATAAGGGAATTTTGTTATTTtgttgttggtggaccagttcagattcttgaatttgctgcgcgaaagaatttgagagcaaatccaaagtaagagtaagcgaagaagtttgttgcaaagcaaaagtaccctttgagaggcagagtgggctgctcaatgggagagacagcagctagtgctgtaaaaggaattcctctcatgagagctatacgtacataatcaaaaagtaccggtgaggtcaagtatgcaaaggcagacctgcggttggcacatgtgctcaggatcaacatggtgtaacacccattgcatgtatcattagcatatgaaatctccgcctaggggtgtt-tttcttgttgtggctgtttttactattaaaatgagGAAAAGGTTACTATAAGCTGAACCTTGAGCCTAGCTGTGCATGCAGGACCCCAGAGAAGTCCCTGCCCACCCTCCCACACACCCCACCCCTGGAAGGAATTTGTAGTTAGGAGTTTCTTGGGCTTTTGGTGCAAATTGGCTAGAGATTGGGGAAGCTACATCAGGAATAAAGGGCTTTTGCTCTCTTTCCCAGGTTGTACTAGGTATCAGGAACTTGTAACCCTCTGGTGGGTCTGCTGGTATTCCGTAGGACCCCTTATCTTGCGAAAGAGTTAGGTGCTGATGCACGAAGGTTCAAGTGAAAAGAACC-TGCTGTGAAAGGCTCCTGCTGGGCTTCACACAGGGGACAATTCAGTATAGCCTTCtgaacccgcaaaatcagagagaggtctcagtttatttagaaagtttattttgccaaggttggggatgtacacctgtgacacagcctcaggaggttctgaagacaggtgcccaaagtggtcagagcacagcttggttttatacattttagggagacatgagacatcaatcaacatatgtaagatgaacagtggttccgtccggaaaaggcc-gggacaactctaagtggggaggggcttccaggtcataggtagataagagaaaaatggttgctttcttcagagtttctgattagcctttccaaaggaggcaatcagatatgcatttatctctgtgagcagaggggtgactgtgaatagaatgggaggcaggtttgccctaagcagttcccagcttgactttcccctttaccttagtgatttcagggccccaaggtttattttcctttcacaTTTCCGCCCATttcttcttaaaaatctttttgagaaagcattttagaagaaagtcagtctttggtctcaagtttcatctgatatctcatggctaggattgtttattcctagacagataattcctgagttattaggaaagttcatttttagcaggttgtgaagtttcatgtcctatgaagagaaaatagggaaaggaagggagaaaaacaaaaataaacaaaagaacaatcctggaaaatcaatatgggccacattactcggaagtccatatatcagtaggcaggtatgaaagaggctcaagtatgtgaaaaggttgctaatattttcttctgaagtttaaatcttatagctgcagttcacagggctttataaaagcacagatgagttttcggtgactccaaatta s panTro1.chr19_random 18283280 2049 + 57627672 GATAATTTTCACTGAGTTTACTGATTCATGGGGGTGAGGTGGGAATGCAGTAGAACGGGGATTCTCAAAGCATGATTCCAAAGTAAGACTTCAGGGATGAACTCATAGTGCCAAACTGCTCCAATGTCACACATAAACTAAAATAAAATAGAAGCTTTTGATTGTTTCAATTTGATATATGGAATGGTTTGGGATACGTAAAGCCCCTAGTAATGTCACAGATAAACTAAAATAAAATAGAAGCTTCTTCATTGTTTCAATTTGATATATGGAATGCTTTGGGATAGGTAAAGCCCCCAGTATTGTGGTTTGTAAGTTCATCCATGATTTTAGAACTTATGATATCATGGTAATACTCCTCACTCTTCTGTGTCAAATTTAAAAAGTACATCTCTTCCTACTGCATTCCATCTTGATTCAAATCAGTTAAGGCAGACTCCAAATGTTATATAAGGGAATTTTGTTATTTtgttgttggtggaccagttcaggttcttgaatttgctgcgcgaaagaatttgagagcaaatccaaagtaagagtaagcgaagaagtttgttgcaaagcaaaagtaccctttgagaggcagagtgggctgctcaatgggagagacagcagctagtgctgtaaaaggaattcctctcatgagagctatacgtacataatcaaaaagtaccggtgaggtcaagtatgcaaaggcagacctgcggttggcacatgtgctcaggatccacatgatgtaacacccattgcatgtatcattagcatatgaaatctccgcctaggggtgttgtttcttgttgtggctgtttttactattaaaatgaggaaaagtTTACTATAAGCTGAACCTTGAGCCTAGCTGTGCATGCAGGACCCCAGAGAAGTCCCTGCCCACCCTCCCACACACCCCACCCCTGGAAGGAATTTGTAGTTAGGAGTTTCTTGGGCTTTTGGTGCAAATTGGCTAGAGATTGGGGAAGCTACATCAGGAATAAAGGGCCTTTGCTCTCTTTCCCAGGTTGTACTAGGTATCAGGAACTTGTAACCCTCTGGTGGGTCTGCTGGTATTCCGTAGGACCCCTTATCTTGCGAAAGAGTTAGGTGCTGATGCACAAAGGTTCAAGTGAAAAGAACCATGCTGTGAAAGGCTCCTGCTGGGCTTCACACAGGGGACAATTCAGTATAGCCTtgtgaacccccaaaattggagacaggtctcagttaatttagaaagtttattttgccaaggttggggatgtacacctgtgacacagcctcaggaggttctgaagacatgtgcccaaagtggtcagagcacagcttggttttatacattttagggagacatgagacatcaatcaacatatgtaagatgaacagtggttctgtccgg-aaaggccggggacaagtctaagcagggaggggcttccaggtcataggtagataagagaaaaatggttgctttcttcagagtttctgattagcctttccaaaggaggcaatcagatatgcatttatctctgtgagcagaggggtgactgtgaatagaatgggaggcaggtttgccctaagccgttcccagcttgactttcccctttaccttagtgatttcagggccccaaggtttattttcctttcaAATTTCCACCCATttcttcttaaaaatctttttgagaaagcattttagaagcaagtcagtctttggtctcaagtttcatctgatatctcatggctaggattgtttattcctagacagataattcctgagttattaggaaagttcatttttagcaggttgtgaagtttcatgtcctatgaagaggaaatagggagaggaagggagaaaaacaaaaataaacaaaagaacaatcctggaaaatcaatatgggccacattactcggaagtccatatatcagtaggcaggtatgaaagaggctcatgtatgtgaaaaggttgctaatattttcttctgaagtttaaatcttatagcttcagttcacagggctttacaaaagcacagatgagttttcggtgactccaaatta a score=825101.0 s hg17.chr17_random 2465497 9156 + 2618010 ggaaaaatggtgg-aaagaagaagaagaaaaaaa-ctgaagacaatctttt--gaagacctgtagccaa-gaaaaattagaattcagtccaaactgtaaaaattaataaaaatggaaaaacattaggcaagactagaatctaacaacaggtgtactatcattttttgaaacaattcttctctctcccatttaccatttttactaaagacaaatcatggcagagctgatttgctttattatacttgacctgattattgtacacagcacagtcatagtaatagtaataatttttttgcataagcttttaaattctctttgatggaagtgaagcaggatgtttccctgacccttctgtgggacttgtgacagggcctcatttattcagcctgccactctcacctccttgcaggagagagcatgcaagcaaatgaggcaggaactggagtgcatgagtgctggaatcagcacttcagtgctgcaggatcaaacttcactcacttggacctgctgcagtcccctgctcatgaaaggaagcatgcaggtgaatgggtgcaggagccagagtgagtgcttttgggtgctggcaggagcaaactctgtgcgggccccacagcagcatctaggtggaggtgcctgcaactcccatagccccagaagtcatgttacagtgctcttttaactctgccttccatggatggcttaagtgtcaacagctcactgagccctctgcctttttgcatgaggcagctgccctccaccagcaagagcagaaggccagtgtgacagccttttgtatctgctctcctggctcccaagctcttgtctggtgtccaggaaaggtgaggtcacatgaacctatcaaaggatggtaaatgtgggggattttgttactgatgaaagtggctcttagcaggaagag-agctgaaaaaggatggggtgggtaggtaatcttcctcaaagttaggctgtatccagccggattcttctccaaggttacaccatcaagctgtccctctgcagtcaagctgcttctctctgatgtccggctgtagtccccaacatccagctgcttcttgcctctgccagctcagtctgagatcttcacaggcacaggatgggacaggatggggccatgagtggtttagaaaaaggcaactttcaagcaggaaaacagggatataagttgtcactttgggccatggtttaaggcttttcagcttgaaggtggggttttgtcagagacctatccttttctgcctagaatttccctgtcccctgtccctatcagaactttgttccatagaaggaatttcggataagacttttggaaagcttagcctagccatggatttgtaccatcaaatacctatgagttgggtgaattcctctcctcttgaggttccaagataaacttggggctcctggaactgttagaaagtgacatgctttacttaccacaggtcaggaaccctgtacagggactgtgtagataaggtatgaggccagttctcccaaggggcttttattggctccataagtcaagtttgattcctcaaagaagagcacaccattcaagtaaaagccttggtaaaatgaccaatttatcgtgtcctgttacaaatgacaacagattcttattgcacttacgcaaataactgtattgccataagttaagaatactcacagatagtttccaattctggggaaaatcaggtagagagaaacaaatatgctccaaatatttttcacaggagtatactaacttgttaaaagctgacaacagctcaaaagaaaagtttccttgactgaaaaaaacaaaataaagggtcagcaatgttttaagcgaaaagtcaaaaagattacttcagtcttctgttagttcagttcatgcagttaattcctgttctgcttgctattcatgaacatttcaggtctccatgagtcctgaaagcttttccttcattgtgatgtcacaatctccagagttattagaaacctgcattcaagaatacctgttagagttttatagctgattataaaaccatcttctaaagaggactaaaacaagacaaaaattgtccatgggtgacaaaaagttttaggtcagccataggcgaaaacacaattgacaagaaaatttgttaccaccatggcacaaaataatttaatataacaatcataattattactgataatgtacaccaggtcatatcagaattataggagtttcccataattttggtgcacataccaataacaattttatacaaatacagcccaaataaaaccaaacaccattttatatttgacaatgcttcctgtataatttttataccaaataagtcaaattatttcatttttggacttgagggaaactaatatcttaaaggattaattaggtcagaaaaatacacaacttgtaatttgattttggaaagtttgtcaaatatcaaaggtttaaaacacttgatatgacaggtcatcataaaataagtcaatttttcaaacaataagcccaaataaaacagcataaagccaattaaatttgtttttcaaaattttttaaacaatctataacattttaatcttgaccataagatacaactttcataagccttttataacctttataacctttattaaggggtcagttaacacttcaagaaaaccttgttaatctgacacaggggcccatatgctggtattgcatcagtgtgcctttgacatcaattattaacttgtatagaaactgaacttattttatctctcaaaatcagcccttataatctcacatgcctacctcttctgtgatagttcctgagccttgaagagctgaatagctttgatttatggccttacgtctcagaaatgcagcttattttgataggcatcttctaccagtcctgaagatgaggttttaattgctgtcagtgtttaagatttagcagatcttggtctcctttttagatccaggagttaaaggccggtaactcaatgtcacaggtactttcaaagtgcacacagaaatatacatggatgtaataacgttaattttttaaaaaaattgtctcagtttctttttcctaagcaaaccaaaaattaataataatggcataggaattgtttcaataagccataaaatctgttaggccaattaccaaaaggcaaaagaaaagaccttctacactgcacagagtattactttggaagaaaacatttcctttagacttttagaaaacattgttagcatcaggccacaacaaacggaacttaaggaaaataacttatatgagctgaaaacaagttgaaggggagagaaaacagcaagtaaatagttgaactttgggttaaaaaattaaaatctcttataatttattaagagtaaatcaatcccttaagaaaatttcatcgctgtaactaattatttagtctataagtgttttttttagcatgaagcccaatcttcaggaagaccattataatttccctttaattatagacaactcaatcatataaaagttttttggtatttttttaaaataaatcctcttattatgacttatagagactgttcatgatatgcttggactatctagtttgttttgaacatccatctttcttaaacaatcagtcattttattttaggtctaaatttaccatacaagattctttctcatatgaaattatttctctttaagctttcttaccagcacaggctgaacagactttgagaggaaaatagtttatagtttacctttgaaacaaagattataatatttcattcccaaagtaaatattactgcctgtggactagaccactaaaagccacaagattcgaagttatggtaatctgactaaattcaagatgtggctatttttattaaaccagtatcaatgtcttatttattaaggattacacaagcaaagatcattctatcacagttttgtaaccccatgccaaattttgacaccttatagtatttgacagggataaacatgaaattgcttgattaataaatgcaaacaaaatgcatgctggcaattcttaagacatgtctaatattactttaccaatcattttaaaagtagcttatttattaaagattttacttaagttacataaacttgagaaagcattcaactagtcttttcttttttcctaataagtatttgatttaagtgctttttttcttaagccaattaattagagctcttttatatattttcagtagtgagacattgtgtacacaacacataaatacatagacctagtaggcatgttgatagaagtacatcttatagattcataagaagatttttccactatcttagactttcaaattctcaataacctgttttaatcccctaggaagttgtcagctaaatggctttaagtttgcatattaaaggaaacaactcaggcaaaaatcaaagagcaaaatttatgtcttaaggtacagagagaaaaagtctggtggtgctagagggaaattaaaatggacttcattgccaaataaacataaaattataaaaatTATAAAGGCCATTTAAATacacacacacacacacacacacacacacacacacacacacatcctatagcttttacttcagaactttagccatgagacaaatacaaattcaccagcttgcaagcaaaaaaactgttgtatccaaacagtggttttgatcttaatagaaaaataacagcagatttaaagcaggcagaaaagaaaatagagaaaaaagagaacttaggaactctgtagtttgtaggtcgaccttaaggctcttcttttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttct--ctttctt--------gctttcttgctttctttccttcttttctttctcttctAAAAAAAAA-TGAAATatacatgcaggagaacgtgcaggtttgttacataggtatatgtgtgccttggtggtttgctgcacctattgacccatcctctaagttccctcctctcattccccaccccctaagagcccctgatatgtgttgctctcctctctgtgtccatgtgttctcaaagttcaactcccatatgtgagtgagaacatgttgtatttggtattctgtttctgtgttagtttgctgaggatgatggtttccagcttcatccatgtccctacaaaggacatgatctcactccgttttatggctgcatcgtattccatggtgtatatgtaccacattttctttatcaagtctataattgatgggcgtttgggttagttccatgactttgctcttgtaaatagtgctgcaataaacatacatgtgcctgtgtctttacagtagaatgatttgtattcctttgggtatataacaagtaatgggattgctggatcaaatggtatttctgattctagatccttgaggaatcaccatactatcttccacaatggttgaactaatttacatGGGCCCTTTCTTTCTTAATGTAAATATGCACAAAGACCATATTActtccattttacttaaactctggcaagtacaggtgccataaaacctatggagtgcttgaaagggaatcattctctttgctttctcctcattcttagattatttgtttcccagttttcttcttaaaaagaggaactgagctgaggcctagaggttttctgtggtggatcaatatgtgccatttgtgggcaggactccacagtgggtcaccactgaaaacaacagttcagttcctcatgcaaatgcacacagacaagccgaatcgagcttaatttgtggagaaaaagcaacagagaggaccctttagaatgcatctctgaactagaattaggatctttaaacaacagcttcctggaaggaaaacaaaacaacAGCCAAGACCACTTTTTGTAAACTGTGCTCAGACACCCCTTAACTCTGTAGCTGTCATCTACCATTATACCCAGCAAGGTcaaagccaaagaggtcaggtcttgcaatacaggaaaatagaggtttagagttaagaagaatctacccatgactcttgaaactccacaaagaaaacaaaacaccccaaaaggggtgactggcgacctttgttctgattctttaagggggttcaagtcattagaagccttctctagattttttggtactgcggatggcaaagggggaaa-gaggtatatggtggaagaaaagtaaatgaaagaaaattTGTTTTCTAAGGCAGGAAGCAAACACAGAAACCAAGTGCACGGATTTTTGGTTCTTTTTGTTTGTTTTCTTCttttgcagctgcaatgaattttagccaaattaaagaggctttgttacccataattttgaattctcacttggatttgaccaagtcaggtagagttggtcaagtctgatgggagaaagaccaaaacaaacaacaaaatgtccaacaaaacgattaccaagcattctaatgataaggagaaattaagaccatctggttgttaaactttagccaagacaaagccccagttcagctacttacctagggatgggtctcaggctgaaagctgctttctaccatcctggaagcaggaaaaaaactcaaactggtgttccctgctgggagtgagctcaaactctacatgcgtttcatcatcatggaagcaggaaatcttgccttccttgtaaaggaagtaaaataaatcttgccttccttgtaaaggaaggcaagtaagccagtaaaactccaaaaaaaaaaaaaaaatagatggggaagttgtacagcaaaatacactttagatcttcaccaaattttgggagatcatggattctttggggagggtgcttccagaactcagtaaattgtcctcttggtttgagccataaggttagctcatgctattaccaggtaccaactggatatttgtcaaaggtcaggtgcatctccactcagaatcccttcAGAATTACAAAAAtgtgaacgctgaatatctgagacaggcttcagttaatttagaaagtttattttgccaaggttgaggatgcttcagtgacacagcttcaggctgctccagtgacacagcttcaggaagtcctgacaacatgtgtgtaaggtggtcagataacacttttgttttatacattttcgggagatatgaggcatcaatcaacatatgtaagataaacacagatttggttcagaaaaggcaggacaactcgaagcaaagccgggacaactcaaagctgggagggggcttccagatcataggtatataagagacaaatggttgcattcttttgagtttctgattagtctttcccaaggagtcaatcagatatgcatttatctcggtgagcagaggggtgactttgaatagaatgagaggcaagtttgtcctaagcagttccgagtttgccttttccctttagcttagtgatttgggggccccaatatttattttactttcacaGCCTTCTAACCTTATTTATCCTGCCTCATGTTTAAGGAGGCATCATAACTCTATGATTAAGACCTGGGCAACAATTTTCTTAAGGCATCTGAAAAAATGTGAAGCTTATCAATGATATCTGAACAAATCATCTTAAACTTGATTGGCTCAATAGCTTAGGGCACTTCAGAGCTGATAATTGTCAAGTAAAAGTAAAAACATCAAGAGCAGGTGCTCCTACTAGAATGCCAAGTTATAATCACTTACCATATTCTTTCAGATTCAAATGAAGGCACTACTCTTGGAGATTCTAATTAGGATATGCACCCCAGCTGCGACCTACTCAAGGCTATGAACTAATTTCAAAAAAAAATTCTtttttttctcaatttatttatttatttatttatttttatgatactttaagttttagggtacatgtgcacaacatgcaggttagttacacatatacatgtgccatgttggtgtgctgcacccatcaacttgtcatttaacattaggtatatctcctaatggtatccttccccc-tccccccacccccacaacaggccccggtgtgtgatgtttcccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgcggtgtttggttttttgttcttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttatatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatgattgttggacatttggcttggttccaagtctttgctattgtgaatagtgccgcaataaacatacatgtgcatgtgtctttacagcagcatggtttataatcctttgggtatatacccagtaatggattgctgggtcaaatggtatttctagttcaagatccctgaggaatcgccacactgtcttccacaatggttgagctagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgatcgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatatgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatggggctgtttgttttttggtctttgacaaacctgacaaaaacaagaaatggagaaaggatcccctatttaataaatggtgctgtgaaaactggctagtcatatgtagaaagctgaaactggatcccttccttacactttatacaaaaattaattcaggatggattaaagacttacatattagacctaaaaccttaaaaaccctagaataaaacctaggcaataccattcaggacataggcatgggcatggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagggtgaacaagcaacctacagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatattgagaatctacaatgaactcaaacaaatctacaagaaaataattcttaaaaagAAAAGTGAGC s panTro1.chr19 42733285 9140 - 82489036 ggaaaaatgttgggaaagaagaagaaggaggaaagctggagacaattttttttgaagaccggtagccaaagaaaaattagaattcaggccaaactgtaaaaattattaaaaatggaaaaacattaggcaagactagaatctaacaacaggtgtactatcatttttcgaaacaattcttccctctcccatttcccatttttactaaagacaaatcatggcagagctgatttgatttattatacctgacctgattattgtatacagcacagtcatagtaatagtaataatttttttgcataagcttttaaattcgctttgatggaagtgaagcaggacgtttccctgacccctttgtgggacttgtgacagggcctcatttattcagcctgccactctcaactccttgcaggagggagcatgcaagcaaatgaggcaggaactggagtgcatgagtgctggaatcagcacttcagtgctgcaggatcaaacttcactcactcggacctgctgcagtcccctgctcatgggaggaagagtgcaggtgaatgggtgcaggagccagagtgagtgcttttgggtgctggcaggagcaaactctgtgcaggccccacagcagcatctaggtggaggtgcctgtgactcccatagccccagaagtcacgttacagtgctcttttaactctgccttccatggatggcttaagtgtcaacagctcagtgagccctctgcccttttgcatgaggcagctgccctccaccagcaagagcagagggccagtgtgacagccttttgtatctgctctcctggttcacaagctcttgtctggtgtccaggaaaagtgaggtcacatgaaccaatcaaacggtggtaaatgtgggggattttgttgctgatgaaagtggctcttagcagaaaggggagctgaaaaaggatggggtgggtaggtaatcttcctcaaagttaggctgtatccagccggattcttctccaaggttacaccatcaagctgtccctctgcagtcaagctgcttctctctgatgtccagctgtagtccccaacatccagctgcttcttgcctctgccagctgagtctgagatcttcacaggcacaggatgggacaggatggggccatgagtggtttagaaaaaggcaactttcaaccaggaaaacagggatataagttctcacttcgggccgtggtttaaggcttttcagcttgaaggtggggttttgtcagggaccgatccttttctgcctagaatttccctgtcctctgtccctatcagaactttgttccatagaaggaattttggataagacttttggaaagcttagcctagccatggatttgtaccattaaatacctatgagttgggtgaattcctctcctcttgaggttccaagataaacttggggctcctggaactgttagaaagtgacatgctttacttaccacaggtcaggaaccccgtacagggactgtgtagataagatgtgaggccagttctcccaaggggatttcattggctccataagtcaagtttgattcctcaaagaagagcacaccattcgagtaaaagccttggtaaaatgatcaatttattgtgtcctgttacaaatgagaccagattcttattgcacttacgcaaataactgtattgccataagttaagaatactcacagatagtttccaattctggggaaaatcaggtagagagaaacaaatatgctccaaatatttttcacaggagtatactaacttgttaaaagctgacaatggctcaaaagaaaagtttccttgactgaaaaaaacaaaacaaagggtcagcaacgttttaagcaaaaagtcaaaaaggttacttcggtcttctgttagttcagttcatgcagttaattcctgttctgcttgatattcatgaacatttcaggtctccatgagtcctgaaagcttttccttcattgtgatgtcacaatctccaaagttattagaaacctgcattcaagaatacctgttagagttttatagctgattataaaaccatcttctaaagaggactaaaacaagacaaaaattgtccatgggtgacaaaaagttttaggtcagccatagtcaaagacacaattgacgagaaaatttgttaccaccatggcacacaataatttaatataacaatcataattattactgataatgtacaccaggtcatatcagaattataggagtttcccataattttggtgcacataccaataacatttttatgcaaatgcagcccaaagaaaaccaaacaccattttatatttgacaatgcttcctgtataatttttataccaaataagtcaaattatttcatttttggacttgagggaaactaatatcttaaaggattaattaggtcagaaaaatacacaacttgtaatttgattttggaaagtttgtcaaatatcaaaggtttaaaacacttgatatcaccggtcatcataaaataagtcaatttttcaaacaataagcccaaataaaacagcataaagccaattaaatttgtttttcaaaattttttaaacaatctataaaattttaatcttgaccataagatacaacttccataagccttttataacctttataacctttattaaggggtcagttaacacttcaagaaaaccttgttaatctgacacaggggcccatatgctggtattgcatcagtgtgcctttgacatcaattattaacttgtagagaaactgaacttattttatctctcaaaatcagcccttataatctcacatgtctacctcttctgtggtagttcctgagccttgaagagttgaatagctttgatttatgggcttatgtctcagaaatgcagtttattttgattggcatcttctaccaggcctgaagatgaggttttaattgctgtcagtgcttaagatttagcagatcttggtctcctttttagatccaggagttaaaggcctgtaactcaatgtcacaggtactttcaaagtgcacacagaaatatacatggatgtaataacgttaatttttttaaaaaattatctctgtttctttttcctaagcaaaccaaaatttaataataatggcataggaattgtttcaataagccataaaatctgttaggtcaattatcaaaaggcaaaagaaaagaccttctacactgcacagagtattactttggaagaaaacatttcctttagacttttagaaaacattgttagcatcaggccgcaacaaacagaacttaaggaaaataacttatatgagctgaaaacaagttgaaggggagagaaaacagcaagtaaatagttgaactttgggttaaaaaattaaaatctcttataatttattaagagtaaatcaatcccttaagaaaatttcatcgctctaactaattatttagtctataagtgttttttttagcatgaagcccaatcttcaggaagaccattataatttccctttaattatagacaactcaatcatataaaagttttttggtattttttaaaaataaatcctcttat---gacttatagagactgttcatgatatgcttggactttctagtttgttttgaacatccatctttcttaaacaatcagtcattttattttaggtctaaatttaccatacaagattctttctcatatgaaattatttctctttaagctttcttaccagcacaggctgaacagactttgagaggaaaacagtttatagtttacctttgaaacaaagattataatatttcattcccaaagtaaatattactgcctgtggactagaccactaaaagccacaagattagaagttatggtaatctgactaaattcaagatgtggctatttttattaaaccagtatcaatgtcttatttattaaagattacacaagcaaagatcattctatcacagttttgtaaccccatgccaaattttgacaccttatagtatttgacagggataaacatgaaattgcttgattaataaatgcaaacaaaatgcatgctggcaattcttaagacatgtctaatattactttaccaatcattttaaaagtagcttatttattaaagattttacttaagttacataaacttgagaaagcattcaactagtcttttcttttttcctaataagtatttgatttaagtgctttttt-cttaagccaattaattagagctcttttatatattttcagtagtgagacattgtgtacacaacacataaatacatagacctagtaggcatgttgatagaagtacatcttatagattcataaga---tttttccactatcttagactttcaaattctcagtaacctgttttaatcccctaggaagttgtcagctaaatggctttaagtttgcatattaaaggaaacaactcaggcaaaaatcaaagagcaaaatttatatcttaaggtacggagagaaaaagtctgatggtgctagagggaaattaaaatggatttcattgccaaataaacataaaattataaaaatTATAAAGGCCTTTTAAATacacacacacacacacacacacaca----------------tcctatagcttttacttcagaactttagccatgagataaatacaaattcaccagcttgcaagcaaaaaaactgttgtatccaaacagtggttttgatcttaatagaaaaataacagcagatttaaagcaggcagaaaagaaaatagagaaaaaagagaacttaggaactctgtagtttgtaggtcgaccttaaggctcttcttttctttctttctttctttccttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctctttcgctttcttgctttctttccttcttttctttctcttctAAAAAAAAAATGAAATatacatgcaggagaacgtgcaggtttgttacagaggtatatgtgtgccttggtggtttgctgcacctattgacccatcctctaagttccctcctctcattccccaccccctaacagcccctgatatgtgttgctctcctctctgtgtccatgtgttctcaaagttcaactcccatatgtgagtgagaacatgttgtatttggtattctgtttctgtgttagtttgctgaggatgatggtttccagcttcatccatgtccctacaaaggacatgatctcactccgttttatggctgcatcgtattccatggtgtatatgtaccacattttctttatcaagtctataattgatgggcgtttgggttagttccatgtctttgctcttgtaaatagtgctgcaataaacatacatgtgcctgtgtctttacagtagaatgatttgtattcctttgggtatataacaagtaatgggattactggatcaaatggtatttctgattctagatccttgaggaatcaccatactgtcttccacaatggttgaactaatttacatGGGCCCTTTCTTTCTTAATGTAAATATGCACAAAGACCATATTActtccattttacttaaactctggcaagtacaggtgccataaaacctatggagtgcttgaaaggggatcattctctttgctttctcctcattcttagattatttgtttcccagttttcttcttaaaaagaggaactgagctgaggcctagaggttttctgtggtggatcaatatgtgccacttgtgggcaggactccacagtgggtcaccactgaaaacaacagttcagttcctcatgcaaatgcacacagacaagccgaatcgagcttaatttgtggagaaaaagcaacagagaggaccctttagaatgcatctctgaactagaattaggatctttaaacaacaacttcctggaaggaaaacaaaacaacAGCCAAGACTACTTTTTGTAAACTGTGCTCAGACACCCCTTAACTCTGTAGCTGTCATCTACCATTATACCCAGCAAGGTcaaagccaaagaggtcaggtcttgcaatacaggaaaatagaggtttagagttaagaagaatctacccatgactcttgaaactccacaaagaaaacaaaacaccccaaaaggggtgagtggcgacctttgttctgattctttaagggggttcaagtcattagaagccctctctagattttttggtactgcggacggcaaagggggaaaagaggtatatggtggaagaaaagtaaatgaaagaaaattTGTTTTCTAAGGCAGGAAGCAAACACAGAAACCAAGTGCATGGATTTTTGGTTCTTTTTGTTTGTTTTCTTCttttgcagctgcaatgaattttagccaaattaaagaggctttgttacccataattttgaattctcacttggatttgaccaagtcaggtagagttggtcaagtctgatgggagaaagaccaaaacaaacaacaaaatgtccaacaatatgattaccaagcattctaatgataaggagaaattaagaccagctggttgttaaactttagccaagacaaagccccagttcagctacttacctagggatgggtctcaggctgaaggctgctttctaccatcctggaagcaggaaaaaaactcaaactggtgttccctgctgggagtgagctcaaactctacatgcatttcatcaccatggaagcaggaaatcttgccttccttgtaaaggaagtaaaataaatcttgccttccttgtaaaggaaggcaagtaagccagtaaaactcccaaaaaaaaaaa----tagatggggaggttgtacagcaaaatacactttagatcttcaccaaattttgggagatcatagattctttggggagggtgcttccagaactcagtaaattgtcctcttggtttgagccataaggttagctcatgctattaccaggtaccaactggatatttgtcaaaggtcaggtgcatctccactcagaatcccttcagaattaccaAAAtgtgaaccctgaatatctgagacaggcttcagttaatttagaaagtttattttgccaaggttgaggatgcttcagtgacacagcttcaggctgctccagtgacacagcttcaggaagtcctgacaacatgtgtgtaaggtggtcagataacacttttgttttatacattttagggagatatgagacatcaatcaacatatgtaagataaacacggatttggttcagaaaaggcaggacaactcgaagcaaaggcgggacaactcaaagctgggagggggcttccagatcataggtatataagagacaaatggttgcattcttttgagtttctgattagtctttcccaaggaggcaatcagatatgcatttatctcagtgagcagaggggtgactttgaatagaatgagaggcagattttccctaagcagttctgagtttgccttttccctttagcttagtgatttgggggcctcaatatttattttactttcacaGCCTTCTAACCTTATTTATCCTGCCTCATGTTTAAGAAGGCATCATAACTCTATGATTAAGATCTGGGCAACAATTTTCTTAAGGCATCTGAAAAAATGTGAAGCTTATCAATGATATCTGAACAAATCATCTTAAACTTGATTGGCTCAATACCTTAGGGCACTTCAGAGCTGATAATTGTCAAGTAAAAGTAAAAACATCAAGAGCAGGTGCTCCTACTAGAATGCCAAGTTATAATCACTTACCATATTCCTTCAGATTCAAATGAAGGCACTACTCTTGGAGATTCTAATTAGGATATGCACCCCAGCTGCGACCTACTCAAGGCTATGAACTAATTTTAAAAAAAAATTCTTTTTCTTCTCTATTTATttatttatttat--------attatacttcaagttttagggtacatgtgcacaacatgcaggttagttacatatatacatgtgccatgttggtgtgctgcacccatcaacttgtcatttaacattaggtatatctcctaatggtatccttcccccctccccctacccccacaacaggccccggtgtgtgatgtttcccttcctgtgtccatgtgttctcattgttcaattcccacctatgagtgagaacatgccgtgtttggttttttgtccttgcgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttatatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatgattgttggacatttggcttggttccaagtctttgctattgtgaatagtgctgcaataaacatacatgtgcatgtgtctttacagcagcatggtttataatcctttgggtatatacccagtaatggattgctgggtcaaatggtatttctagttcaagatccctgaggaatcgccacactgtcttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgcccttctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttgtcatgtgtcttttggctgcataaatgtcttcttttgagaagtgtctgttcatatcctttgcccactttttgatggggctgtttgttttttggtctttgacaaacctgacaaaaacaagaaatggagaaaggatcccctatttaataaatggtgctgtgaaaactggctagtcatatgtagaaagctgaaactggatcccttccttacactttatacaaaaattaattcaggatggattaaagacttacatattagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcatggacttcatgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagggtgaacaggcaacctacagaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatcgagaatctacaatgaactcaaacaaatctacaagaaaataattcttaaaaagAAAAGTGAGC a score=34107.0 s hg17.chr17_random 2474653 238 + 2618010 CTTGAAATTTTCAGCCTTTCTGGGTTTATATATATTAAAATGTTAAGTGTGGAGATGTTTAAATTATAACGTAAACCCATAGAGACCACTGTCAGAAATATACCATGCTATCCAGAT----------------AAAATACAGCTCAACATGCTTTTTTTTCTCAGCAGAACTCACTGGGAAATAAAGCCCGCTTTTTGGTTATAAATTCCAAAATGTTG-TTTATTGAGTGAAATGACTCGAGTACATTA-----------------AATTC s panTro1.chr19 42742425 238 - 82489036 CTTGAAATTTTCAGCCTTTCTGGGTTTATATATATTAAAATGTTAAGTGTGGAGATGTTTAAATTATAACGTAAACCCATAGAGACCACTGTCAGAAATATACCATGCTATCCAGAT----------------AAAATACAGCTCAACATGCTTTTTTTTCTCAGCAGAACTCACTGGGAAATAAAGCCCGCTTTTTGGTTATAAATTCCAAAATGTTG-TTTATTGAGTGAAATGACTCGAGTACATTA-----------------AATTC s mm5.chr11 99297202 267 + 121648857 CTTAAGAATTCCAGTCTTGA-AGGTATGTTTCTGATAAAATATTAAGAATGGAAATGCTTGAGGTACAA---AGACTCCAAAAGACCACGTTCTGAAACATTCCACACTATCCAGATGAGTCACAGGCCCTTGAAAACACAACAAAATACGC-ATTTCTTCAGAGTGCAATTCCATGAGTAATACAAGTCACTTTGTGATTATAAATTTTCACATGCTGATTCTTTAATTGAAATAAGTTGAGGACATTGTTTTATATTAGTCTATTAATTA a score=16060.0 s hg17.chr17_random 2474891 123 + 2618010 TTTATAGAAGA--TTTCCCTTATTTCATTGGTGTCTACTTTTCT-------GAAATTTGGTTTTATGTTTTTTGTCAAAATAGGGACAATAGTATTGTGAGATATAATGTGTTCATGATA-AAATGTGTT--TCA s panTro1.chr19 42742663 123 - 82489036 TTTATAGAAGA--TTTCCCTTATTTCATTGGTGTCTACTTTTCT-------GAAATTTGGTTTTATGTTTTTTGTCAAAATAGGGACAATAGTATTGTGAGATATAATGTGTTCATGATA-AAATGTGTT--TCA s mm5.chr11 99297612 132 + 121648857 TTTTTAAAAGATTTTTTTTTTATTTCACTGGCATGTACTTTTTTTCCCTCAGAAATTTGCTTTTATGTTCT---ACAAAATTGATTTGATTGGGATTAAAGGTGTCATATACTAAAGGCATAAGTATTTTAATTA a score=8636.0 s hg17.chr17_random 2475014 35 + 2618010 AGAGCT-AAGGCATGAATTAAA--TGTCTTAATTTAGA s panTro1.chr19 42742786 37 - 82489036 AGAGCT-AAGGCATGAATTAAATCTGTCTTAATTTAGA s mm5.chr11 99297744 34 + 121648857 AGAACA-AAGATGTGAGTTAAAATTTTCCCAATAT--- s canFam1.chr9 39375222 38 - 53642819 AGAGCTAAAGACATGAATTAAGTCTGTCCCAGTTTAGG a score=15278.0 s hg17.chr17_random 2475049 51 + 2618010 ATATTAAGACACATGTGCACATACACACA-----------CATATACACACAGCACTTTTAT s panTro1.chr19 42742823 51 - 82489036 ATATTAAGACACATGTGCACATACACACA-----------CATATACACACAGCACTTTTAT s mm5.chr11 99297778 55 + 121648857 ------AGACACATGTATACAAATACACATTTCGTGGGTTTATAT-CACATAGCATTTATCT s rn3.chr14 6437471 51 + 112220682 ACATTACCCCATGTGTGCACACTAACACA-----------TATGTGTACATAGCACATCTGT s canFam1.chr9 39375260 50 - 53642819 ATATTAAGACATATGCATGTACACATACA-----------CATATACATGTGCTGCTTTGT- a score=10292.0 s hg17.chr17_random 2475100 47 + 2618010 TCCAATACCTTAAATTATCTATAT--------------------TTGATATAGAATGT--ATCTTCAAA s panTro1.chr19 42742874 47 - 82489036 TCCAATACCTTAAATTATCTATAT--------------------TTGATATAGAATGT--ATCTTCAAA s mm5.chr11 99297833 61 + 121648857 T--------TTAAATGATTTATATATAGTTAAATTTCTACTGTATTTATATAAAATGTAAATCTTCAAT s canFam1.chr9 39375310 47 - 53642819 TCCAATATCCTAAATTATCTATAT--------------------TTGATAAAGCACTT--AGTCTCGAA a score=1994.0 s hg17.chr17_random 2475147 8 + 2618010 ATGATTTC s panTro1.chr19 42742921 8 - 82489036 ATGATTTC s canFam1.chr9 39375357 8 - 53642819 GTGATTTC a score=3516.0 s hg17.chr17_random 2475155 29 + 2618010 AACACGGGTTGCTCCTCCTGTGTCTTTGT s panTro1.chr19 42742929 29 - 82489036 AACACGGGTTGCTCCTCCTGTGTCTTTGT s canFam1.chr9 39375568 20 - 53642819 AACATGAGT---------TGTATCATCAT a score=4171.0 s hg17.chr17_random 2475184 19 + 2618010 GTAAAATATAATTGCCAGG s panTro1.chr19 42742958 19 - 82489036 GTAAAATATAATTGCCAGG s canFam1.chr9 39387355 19 - 53642819 GTAAAATATAGTTGTCCAG a score=0.0 s hg17.chr17_random 2475203 11 + 2618010 GAATCAGTAAA a score=473.0 s hg17.chr17_random 2475203 5 + 2618010 GAATC s panTro1.chr19 42742977 5 - 82489036 GAATC a score=1642.0 s hg17.chr17_random 2475208 6 + 2618010 AGTAAA s panTro1.chr19 42742982 6 - 82489036 AGTAAA s mm5.chr11 99298307 6 + 121648857 AGTGCA s rn3.chr10 88598208 6 + 110733352 AGTTCA a score=65803.0 s hg17.chr17_random 2475214 309 + 2618010 ATAATTATGAAAGCAATAGAGAATGATAC-----CAATGAATTCTTAAGTGCAGAAAA------GTTTATTAGAAAGCAGAGATGCAACAAAGCATAAGAAATTCACCCTAGGAG-----------AAAC--ACAGAATACAATTGGGTGGCTGGATCTGAGGGTGCAAC-ATCAGTGACAAAACTGGTCCTGCAGATAATATCTACCTCACTGAGAAGGAGAATCTGTACCTTAAAGTGATAAAGAAAATAAGGAAATCAGAAGATTGGAATAATTTCTTAGCTAGTGTATTACAAATTAATTCACATTTGGTGCCACCACCAGAAGAAAAAG- s panTro1.chr19 42742988 310 - 82489036 ATAATTATGAAAGCAATAGAGAATGATAC-----CAATGAATTCTTAAGTGCAGAAAA------GTTTATTAGAAAGCAGAGATGCAACAAAGCATAAGAAATTCACCCTAGGAG----------AAAAC--ACAGAATATAATTGGGTGGCTGGATCTGAGGGTGCAAC-ATCAGTGACAAAACTGGTCCTGCAGATAATATCTACCTCACTGAGAAGGAGAATCTGTACCTTAAACTGATAAAGAAAATAAGGAAATCAGAAGATTGGAATAATTTCTTAGCTAGTGTATTACAAATTAATTCACATTTGGTGCCACCACCGGAAGAAAAAG- s mm5.chr11 99298313 299 + 121648857 ATGGTTATGGAAGACACAGACA---GTAC-----CAATGAATTCTTATATGTAAGAAA------GTTTATTAGAAAGAATAGAAACAACAGAATAAAAGAAATTCATTTTAGGGG----------AAAACATACAGAATAGACCCAGCCCCTCAGGTCTGGGGTTGTAAA-GTCAATGCTAAGACAAAGGCTGTAGAAAGTGTCTTATTTACTGGGAAGAATAAT-------TTAGAGCTACAAAGTCAATC---CATTTGGAGAACTAGGATGAATTCTTAGCTCACAACTTAGAGATTAATTTCAGCACAGTGCAAACATTAGAAAGACATG- s rn3.chr10 88598214 293 + 110733352 ATGGTTATGGACAACACAGAGAACAGTAC-----CAATAAATTTTTTATATTAATAAA------ATTTATTAGAAGGAATAGAAACAACAGAATACAAGGAATTCATTTAAGGGAA---------AAAAT--ACAGAGTATATCCAAACCCTAAGGTCTGGGGTTATAAA-GTCAATAA--------GGGCTGTAGAAAATGTCTGATTTACTAGGAAGAATAAT-------TTAGAGCTACGAGGCCAATC---AATTTGGTGACTTGGGGTAAATTCTTAGGTCATAACTTAGAGATTAATTTCAGCACAGTACCAATATTAGAAAGACATG- s canFam1.chr9 39387374 296 - 53642819 ACTGTATTGAAAATCTTAAAGAAGAGTACTGTCACACTGAATTTTCA--TACAGGAAAGTGGTGGTTTATTTTGACATAGAGTTATAACATAGGACAA----------TTTGGAGAATAAGAATTATAAA--AAAGAATCCA-TTGGACAATTAAGAGAGAGGCTATAAATATCTGTAATGTAGAA-ATACTGAAATTAAACTTTAGCTCCTTGAACTTGATGAG-------TTGGTGCCCCACAGTTGAGA---ATTTAGGAAGAATTAGTCAATACAACAGTTGGTATATTGTAAGGAAATTC-------------ATACTTGAATGAAAGGG a score=60078.0 s hg17.chr17_random 2475523 198 + 2618010 --AAAGCAAGGGAGGGAGTTTAAAATGA-ACCAGAATGTTCTCACAGAGTCAGTGAAATGGTGGTGGGCTCTTTGGAAGCATAAGGTCCATCCTATTGAATGA-CATCAACCCCACTTCATGTATCCTAATGGTCAGCACAGTAGAAGGGTCTACATCTGTGGGCCAGTGGTGAA-GGGGGACGTGAGCC-AGGGCAGTGGGCT s panTro1.chr19 39774753 196 + 82489036 --AAAGCAAGGGAGGGAGTTTAAAATGA-ACCAGAATGTTCTCACAG--TCAGCGGGATGGTGATGGGCTCATTGGAAACATGAAATCCAACCTGCTGAATGA-CATCAATCCCACTCCATGTGTCCTAATATTCAGCACAGAAGAATGGTCTACAACTGTGGGCCTGCAGTGAA-GGGAGAGATGAGCC-AGGGCAGTGGGCT s mm5.chr11 99298612 184 + 121648857 --GTAGCAAACAAGAGAATGTAATGTGA-GCCAGGAGGTGTTGACTGATTCTGCGGAA-GATGGT-GGCTCACAAGAATTGTGTGGTCCATCCTGCTAAATGA-TGCCAAACAGATTCCACGTGTCCTACGGGTTCACATGCAAGAATGGTACATATCTGT-------------A-CGTGGAGATGTGCCTAGATTAGGGATCT s rn3.chr10 88598507 185 + 110733352 --GTAGCAAACAAGAGAATGTAAAGTGA-GCCAGGGGGTGTTGACTGACTTTGGGGAG-GATGGTGGGCTCACTGGAACTTTATGGTCCATCCTGCTAAATGA-TGTAGAACACATTCCATGTGATCTGTGGCTTCACACGCTAGAATGGTACACATTTGT-------------A-AGAGGAGATGAGTCTACAGCAGGGAACT s canFam1.chr9 39387670 203 - 53642819 AAAGATCCAGAAGTAGAATTTGGACTGAGGCCAGAATATGCTTACAGAGTCAGTGGGACAGTGATGGGCTCGTTGGAATCGTGAGACCCAACTCAGTGGAGCATTACTAACCCCACTTCATGTGTCCTAATGGTGAGCAC-CAAAAAGAGTCTACGTCTGTGGGGCAGAGGTAAACAGAGGTGGTGGTCACAGGGCAGGGGGCT a score=82039.0 s hg17.chr17_random 2475721 96 + 2618010 CAGCAGCAAGAGGA---GGCACAGCACAAGGGGCGGGGACAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAG s panTro1.chr19 39774949 96 + 82489036 CAGCAGCAAGAGGA---GGCGCAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTTGGGCGATAGCAAGTGGTGTGGCAGGAGACTCGGCCACAG s mm5.chr11 99298796 99 + 121648857 CAGCAGCAGCAGGGTGTGGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGGTTTGGCAGCAGACCTGACCACAG s rn3.chr10 88598692 96 + 110733352 CAGCAGCAGGGGGT---GGCACAGCACATGGGGCGGGGGCAGGTGGAGATGACACAGGTGGGGCGGTAGCAAGTGCTTTGGCAGCCAACCTGACCACAG s canFam1.chr9 39387873 96 - 53642819 CAGCAGCAAGAGGA---GGCACAGCACATGGGACGGGGGCAGGTGGAGATGACACAGGTGGGGCGATAGCAGGTAGTGTGGCAGGAGACCCGGCCACAG s fr1.chrUn 46211338 96 - 349519338 CAGCAGTAGTAGCA---GCTACAGCAGCAGCAGCAGCTACAGCAGTAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTACAG a score=19899.0 s hg17.chr17_random 2475817 48 + 2618010 ACTGGACGCA------------Ggcagcagcaggggcggcagcagc---------atgggcggcagcag s panTro1.chr19 39775045 34 + 82489036 ACTGGACGCA------------GGcagcagcaggggcggcagcagc----------------------- s mm5.chr11 99298895 45 + 121648857 ACTGGTCTCA------------GACAGCAACAGGGGCGGCAACAGG------------GGCGGCAGCAG s rn3.chr10 88598788 57 + 110733352 ACTGGTCTCA------------GACAGCAGCAAGGGCGACAGCAGGGCCGACAGCAGGGGCGGCAGCAG s canFam1.chr9 39387969 60 - 53642819 ACTGGGCGCAggcagcaggaggggcagcaggaggggcggcagcagc---------tagagccacaggag a score=3301.0 s hg17.chr17_random 2475865 9 + 2618010 ctggattca s panTro1.chr19 39775079 8 + 82489036 -tggattca s rn3.chr10 88598845 9 + 110733352 CTGGAACCA s canFam1.chr9 39388029 9 - 53642819 ctggagcca a score=20882.0 s hg17.chr17_random 2475874 58 + 2618010 cagcaagagggg-cggcagcagctggagatgcagc---------------agctgggacggcagcagGT------------------------------TGGCT s panTro1.chr19 39775087 59 + 82489036 cagcaagagggggcggcagcagctggagatgctgc---------------agctggggtggcagcaggt------------------------------gggct s mm5.chr11 99298955 46 + 121648857 CGGCAGCAGGGG-CTGCAGC------AAGGGCTGC---------------AGCAGGGGCGGCAGCAGG------------------------------------ s rn3.chr10 88598854 73 + 110733352 CCACAGGAGGGT-TGGCAGCAGCTGGAGATGCAGCAGCTGGGGCGACAACAGCTGGGGCGGCAGCAGGT------------------------------GGGCT s canFam1.chr9 39388038 88 - 53642819 cagcaggagggg-cggcagcagctagagatgcagc---------------agctgggcctgcagcagctggagccacagcagctggaactggagcaggaggggc a score=23366.0 s hg17.chr17_random 2475932 41 + 2618010 GGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCACCTG s panTro1.chr19 39775146 41 + 82489036 ggcagcacacagactggcagcactggggtctgcagcagctg s mm5.chr11 99299001 29 + 121648857 GGC------------GGCAGCAGCTAGAACCACAGCAGCTG s rn3.chr10 88598927 41 + 110733352 GGCAGCACACAGACTGACAACACTGGGGCCTGCAACAGCTG s canFam1.chr9 39388126 41 - 53642819 ggcagcagctagagatgcagcagctgggcctgcagcagctg s fr1.chrUn 46211456 41 - 349519338 AGCAGCAGCTACAGCAGCAGCAGCAGCTACAGCAGTAGCAG a score=57473.0 s hg17.chr17_random 2475973 171 + 2618010 GACACAcagcagct---------------ggggcgacagcagctggagatgcagcagctggggtggcagcaggtgggctggcagcacacagactggcagcactggggcttgcagcagctggacatacagcag-ctggggcggcagcagctggagatgcagcacct---------------agggtggcagcagGTCGTCT---------------------------------------------CA s panTro1.chr19 39775187 217 + 82489036 gacacacagcagct---------------ggggcgacagcagctggagatgcagcagctagggcggcagcagGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGCAGCAGCTGGACACACAGCAGGCTGGGGCGACAGCAGCTGGAGATGCAGCATCT---------------GGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCTTGAAGCAGCTGGGCACA s mm5.chr11 99299030 126 + 121648857 GAGCTACCACAGGA---------------AGGTCGACAGCAGCTGGAAATGCAGCAACTGGGGCGGCAGCAGGTGGGCTGGCAGCACACAGACTGGCAGCACTGGGGCCTGCAGCAA----------------CTGGGTCTGCAGCAGCTAGACA------------------------------------------------------------------------------------------CA s rn3.chr10 88598968 126 + 110733352 GACACACAGCAGCT---------------GGGCCTGCAACAGCTGGACACACAGCAGCT---------------------------------------------GGGCCTGCAACAGCTGGACACACAGCAG-CTGGGGCGGCAGCAGCTGGGGCGGCAGCATGT---------------AGGCTGGCAGCACACAGACT---------------------------------------------GA s canFam1.chr9 39388167 201 - 53642819 gagccacagcagctggaactggagcaggaggggcggcagcagctggacacacagcagctggggcggcagcaggtggtcctgcagcaggtggtctggcagcaggtggggcggcagcagctagagatgcagcag-ctgggcctgcagcagctggagccacagcagcTGGAACTAGAGCAGGAGGGGCGGCAGCAGCTGGACA---------------------------------------------CA a score=-7224.0 s hg17.chr17_random 2476144 55 + 2618010 CAGCAGCTGGGGCGACAGCAGGTGG---------------------------------------------GTTGGCAGCACACAGACTGGCAGCA-------------------------------CTGGG s panTro1.chr19 39775404 100 + 82489036 CAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGGTGGTCTGACAGCAGCTGGGGCTGCAGTAGGTGGGTTGGCAGCACACAGACTGGCAGCA-------------------------------CTGGG s mm5.chr11 99299156 10 + 121648857 CAGCAGCTGG------------------------------------------------------------------------------------------------------------------------- s rn3.chr10 88599094 40 + 110733352 CAACACTGGGGCCTGCAGCAGCTGG------------------------------------------------------------AGATGCAGCA------------------------------GCTGG- s canFam1.chr9 39388368 86 - 53642819 CAGCAGCTGGGGCGGCAGCAGGTGG---------------------------------------------TCCTGCAGCAGGTGGTCTGgcagcaggaggggcggcagcagctagagatgcagcagctggg s fr1.chrUn 46211497 46 - 349519338 CAGCAGCTACAGCAGCAGCAGCAGT------------------------------------------------AGTAGCAGCTACAGCAGCAGC------------------------------------- a score=69979.0 s hg17.chr17_random 2476199 86 + 2618010 GCCTGCAGCAGCTGGACACACAACAGCTGGGGCGGTAGCAGGTGGTCCTGCAACAGGTGGTCTGACAGCAGCTGGGGCGGCAGCAG s panTro1.chr19 42743912 81 - 82489036 GCCTGCAGCAGCTG-ACACACAGCAGCTGGG-CGCAAGCAGGTG-TCTTGCAGCAG-TGGTCTCACAGCAGCTGGG-CGGCAGCAG s mm5.chr11 99299166 86 + 121648857 GCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGGTGGTCCTACAGCAGGTGGTCTGGCAGCAGCTGGGCTGGCAGCAG s rn3.chr10 88599134 86 + 110733352 GCCTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGGTGGTCCTACAGCAGGTGGTCTGACAGCAGCTGGGCTGGCAGCAG s canFam1.chr9 39388498 86 - 53642819 ggcggcagcagctggacacacagcagctggggcggcagcaggtggtcctgcagcaggtggtctggcagcaggaggggcggcagcag s fr1.chrUn 46211543 83 - 349519338 AGCTACAGCAGCAGCAGCTACAGCAGTAG---CAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAGCTACAGCAGCAGCAG a score=41087.0 s hg17.chr17_random 2476285 121 + 2618010 GTCTCCTGA----------------------CAGAGGACTTGGCC-----GCAGCCC-TGGTCAGAGCACACGGAGCCACAACAGG-AGCTGACCATGGTGTCAGAACGGGGA----------------GGATCTGGGTGGGTTT--TCAAGAGAGTGAAGTTCTTGG s panTro1.chr19 42743993 120 - 82489036 -TCTCTGGA----------------------CAGAGGTCTTGGC------GCAGCCCCTGGTCAGAGCACACGGAGCCACA-CAGGGAGCTGACCATGGTGTCAGACCGGGGA----------------GGATCTGGGTGGGTTT--CCAAGAGAGTGAAGTTCTTGG s mm5.chr11 99299252 105 + 121648857 -------------------------------------CCTTGGCC-----ACAGCTC-TCCTCAGAGCAGACAGAGCCACAACAAG-AGTTGACCATTGTGTCAGAG-GTGGA----------------GATTCTGGGTGGGTTT--CTGAGAGAGTGAAGATGTTGG s rn3.chr10 88599220 105 + 110733352 -------------------------------------CCTTGGCC-----GCATCCC-TCCTCAGAGCAGACAGAGCCGCAACAAG-AGTTGACCATGGTGTCAGAG-GTGGA----------------GGTTCTGGGTGGATTT--ATGAGAGAGTGAAGGTATTGG s canFam1.chr9 39388625 158 - 53642819 GCCGCTGGAACCACAGCATGTGGGACGGCAGCAGGTCTCTTGGCC-----ACAGCTC-TGGTCAGAGCAGACGGAGCCACAACAGG-AGTTGACCATGGTGTCAGTGAAAGGAGTTGGGTTCCACAGGTGGATTTGAGTGGGTTT--CCACTAGGGTG-GTTTCTTGA s fr1.chrUn 41033528 127 - 349519338 --------------------GCGGTCGGGCCCAGAGCAGGCGGTCAGCAGGCGGTCG-GGCCTGGAGCAGGTG--GTCGGGACCAG-AGCTGGTCCTGGTCCTGGAC-CCGGA----------------GCCGCCTGGCTGGTCCAGCTGTGAGCAGGAAGCTCTGGG a score=78401.0 s hg17.chr17_random 2476406 240 + 2618010 GTTTGGAAGTCTTCTGGGTCCATAGCCTCCTTTATACCCTGCTGAAGGCCCATTGCCACCACG-TCATTATTTCCTTATTA----TTTACCTCGTGGAAAACTTAATCA-TGTAATTACATAATTGT-GTGCTTCTACTTAAATACTCCAAAA--GAGAGAAAATAACCCATTTCCTTTTCC----TGCTGTGCTCC----------------------------TGTGTTTCT--ATTGGAAACACTTGTCATA-T-----------------TTCTTCCTTAGTGGGGGTCACCTTTGT s panTro1.chr19 42744113 240 - 82489036 GTTTGGAAGTCTTCTGGGTCCATAGCCTCCTTTATATCCTGCTGAAGGCCCATTGCCACCACG-TCATTATTTCCTTATTA----TTTACCTCGTGGAAAACTTAATCA-TGTAATTACATAATTGT-GTGCTTCTACTTAAATACTCCAAAA--GAGAGAAAATAACCCATTTCCTTTTCC----TGCTGTGCTCC----------------------------TGTGTTTCT--ATTGGAAACACTTGTCATA-T-----------------TTCTTCCTTAGTGGGGGTCACCTTTGT s mm5.chr11 99299357 241 + 121648857 GTTTGGAAGTCTCCTTGCCCCACGCCCCCTTTTATACCTCGCTGAACACCTCATATGACTACA-TCATTATTTCCTTGTTAGTATTTTCCTTCTTGGAAAAGTTAATTA-TTTAATTACATAATTGTAATGTTTCTAGTTAAATACTCCAAAA--GAAAGAAAACATGACATTTCTTTTTCC----TGATG-GCTCC----------------------------TGTGTTTGC--AACTGAAACACTGTTCGCATT-----------------TTTTTCCATAGT--GGGTCACCTGT-- s rn3.chr10 88599325 230 + 110733352 GTTTGGAAGTCTCCTTGCCCCACACCCCCTTTTATACCCCACTGAGCACCTCATATGACTACG-TCATTATTTCCTTGCTAGTATTTACCTTCTTGGAAAACGTAATCA-TTTAATTACATAATTGTAATGTTTCTAGTTAAATACTCCAATA--GAAAGAAAGCATGACATTTTCTTTTCC----TGAT--AGTCC----------------------------TGTATTTGC--AACTAAAACACTGCTTGCA-T-----------------TTTTTTC-----------CACTTGT-- s canFam1.chr9 39388783 284 - 53642819 CTTTGAATGTTTCCTTACCTC-TGTCCCCTTTTATACTCTGCTGAGTAGTTGATGTTACTATGAGCAACATT--CTTGTTG---TTTTTCCTACCAGGAAAC--AATTAGTGTTACTA-ATAATCGT-GTTTATCAGGTTAAATATGCCAATATCTAAGTAAAGCATAATTTACCCTTTTCTGCAGTGTTAAGATTCATTGAACCACTTTCGAATTTTTCTCTAATGTATCTTCTAAGTTGGAGC---TGTCACA-TGATATTCAGTTACTGGGTTTTTCC---ATGTGTCCCACTTTTGT a score=18711.0 s hg17.chr17_random 2476646 133 + 2618010 CCCTGGTCTCTGCAGTGTCTTTTACAAAGCAC-TGGTCACATGA--CTCTGACACTTTA-TTTCTAAATGTGATTCTCCCTCCTACCTGTAGATTGCTCTCTGCAAATCATGGGGGACAATTTTTAT-AATGTGAATG s panTro1.chr19 42744353 133 - 82489036 CCCTGGTCTCTGCAGTGTCTTTTACAAAGCAC-TGGTCACATGA--CTCTGACACTTTA-TTTCTAAATGTGATTCTCCCTCCTACCTGTAGATTGCTCTCTGCAAATCATGGGGGACAATTTTTAT-AATGTGAATG s mm5.chr11 99299598 115 + 121648857 -------------------TGCTACAAGTAAC-TTGTCACAGGACTCTCTGGCATTTTGTTTTTTAAACGTGGCATTCCCTTCCATCCGTACATTCCT---TGAAAATCATAGAAATGCTCTTCCACAAATTCCAGTA s rn3.chr10 88599555 118 + 110733352 -------------------TGTTGCGAGTAAC-TTGTCCCATGACTCTCTGGCATTTTGTTTTCCAAATATGACATTCTCCCCCATCTGAACACCATTCCTTGCAAATCATAGAAATAATCTTTCACAAAATCCAGTA s canFam1.chr9 39377039 113 - 53642819 -CCTTGTCT----GATGTGTCTTCCAAAGTACACTCTCCTATGA--CATTATTTCTTTGGATTTTACAAGTGTTAAATCCTCATTTATGTATTTAACTCCAGGATAAT-----------ATGTTGAG-AATG------ a score=80348.0 s hg17.chr17_random 2476779 335 + 2618010 TGTCTTTTGTTGTCAAA----------TAATGTCCTGGTCAGATGAAATGTTGGAAAGGAATTAGAAGGAAGGACTCATTCGGGAGAAGGATGTCCCATCTATAATGAAGATGACTCTGATT---CCGTGTATGCTTCTTGAATGGTTGGGGAGATGGTCAG----------ATCTCAAGGAAGTTATAAACTCTGTGTC---------AGATCTCATTCCACCACTCCAAGTGAAAGTAC-----TTAGCCATGACTC-ATTGCCTTTAATGAGTAAAAACACA-----TTTTTCTGTATGTCTTACAGCATAGGCATTTGGAGTAGGAAGTTTTGATTTA-CCTTTGATCATCAAAACTGCATGATGGATTTTCATT- s panTro1.chr19 42744486 335 - 82489036 TGTCTTTTATTGTCAAA----------TAATGTCCTGGTCAGATGAAATGTTGGAAAGGAATTAGAAGGAAGGACTCATTCGTGAGAAGGATGTCCCATCTATAATGAAGATGGCTCTGATT---CTATGTGTGCTTCTTGAATGGTTGGGGAGATGGTCAG----------ATCTCAAGGAAGTTATAAACTCTGTGTC---------AGATCTTATTCCACCACTCCAAGTGAAAGTAC-----TTAGCCATGACTC-ATTGCCTTTAATGAGTAAAAACACA-----TTTTTCTGTATGTCTTACAGTATAGGTATTTGGAGTAGGAAGTTTTGATTTA-CCTTTGATCATCAAAACTGCATGATGGATTTTCATT- s mm5.chr11 99299713 325 + 121648857 TGCCTTTTGCTATCAAG----------GAGTGTTCCTCCCAGGTGAGA---TTAGAAGGAGTTAGAAGGAAAGGC-CATTTAGAAGGAGACTGT-CCATCTTTCATGAGAATGATGGTGATT---TTGTGTGTCC--ATTAGAGGATCTGGGAAATGTGCAG----------ACCT-GAGAACATTCTAAAT----TATC---------AGATCTCATTCCAGTCTCTTAAGTCGAAGAGC-----TTGGCAGTGGTGCAACTACCTAGAAATAATAGAAACTCAG----TTTTTTTGTATGTCTTTCTGAAGAACGATTAAGAGTGGGGAAATTTTATTCATCTTTTAATCAT-GAAACTGCACAGTAGATTTTTTTT- s rn3.chr10 88599673 331 + 110733352 TGCCTTTTGCTGTCAAG----------GAATGTTCATTCCAGGCGAGAT-TCAGGAAGGAGTTAAAAGGAAAGAC-TGTTTAGAAGGAGGCTGT-CCATCTCTCATGAGGACGATGGTGACT---TTGTGCGTCC--AGTAGAGGATCTGGGAGATGAGCAG----------GCCT-GAGAACATTCTAAAT----TGTC---------AGCTCTCACTCCACTATCTTAAGTCAAAGAGC-----TTGGCAGTGGTGCAACCACTTAGAAATAATAGAAACTCAATTATTATTTTTGTATGTCTTTCTGAAGAACGAATAAGAGTGGGGAGATTTTATTCATTGTTTAATCAT-GAAACTGCATAGTAGATTTTTTGC- s canFam1.chr9 39389593 341 - 53642819 TCTCTTTTTTTGTCAAAGTAGGAAAATGCATGCTACTGTCAGGTGAAGTGCTGATAAGGAAATAGAAGGATTCAT-CACT------GGGGTTAC-TTGTGTACAATG--GATGGGGAGGACTGGACTGTGTTTCC----TGGATGATTGCAGAGTTAGGGGGCACAAAAGGCATTCCAAACTCATTGTAATGACTGTGCCTCAAGATATAGCTTTGACTCATTCTTTTTCAATGAAAGAACCATTTTCAGAAATGATTT-TTTTCCTT-------CAGGAAC--------CTTCTCCACATATAGTATGCTAAAGAT-----GAATGGG----TTTGACCTTTCTTTTGGCTGGCCAACATATGTAATAGATTCTGCATT a score=1538.0 s hg17.chr17_random 2477114 8 + 2618010 -GACAAAAG s panTro1.chr19 42744821 8 - 82489036 -GACAAAAG s rn3.chr10 88600005 8 + 110733352 -CACTAAGG s canFam1.chr9 39389934 9 - 53642819 ACATGGAAG a score=0.0 s hg17.chr17_random 2477122 5 + 2618010 CATTT a score=1119.0 s hg17.chr17_random 2477122 4 + 2618010 CATT s panTro1.chr19 42744829 4 - 82489036 CATT s rn3.chr10 88600013 4 + 110733352 CATT a score=91.0 s hg17.chr17_random 2477126 1 + 2618010 T s panTro1.chr19 42744833 1 - 82489036 T a score=2792.0 s hg17.chr17_random 2477127 30 + 2618010 GTTATATGTAAACAATATTTAGAATTATTA s panTro1.chr19 42744834 30 - 82489036 GTTATATGTCAATAATATTTAGAATTATTA s canFam1.chr9 39389943 26 - 53642819 GTTTTATTTAAAGCATCTGT----TTCTTG a score=24043.0 s hg17.chr17_random 2477157 138 + 2618010 --AGCCTTCAATAATATGCATCCAAGACATTCTATTGGGTACTCTGGGTATAGAACAGATAAACCCTCCTCTTTTTCCTGCAGGTACTTGTATAAGACACATGCATAAGAAACAGAATTTGGCAAAAATGAAAAGAATTA s panTro1.chr19 42744864 138 - 82489036 --AGCCTTCAATAATACGCATCCAAGACATTCTATTGGGTACTCTGGGTATAGAACAGATAAACCCTCCTCTTTTTCCTGCAGGTACTTGTATAAGACACATGCATAAGAAACAGAATTTGGCAAAAATGAAAAGAATTA s rn3.chr10 88600753 133 + 110733352 --AGATTTTGGCAATATATGTGCAGGAGTTTCTGCTGGCTATTCTAGGCATAGAGCAGGTAACCCTCACTCCTTT--CTGTGAGTGGTTGGAAAAGACACAGTCAGAGGGAGC--CATTTGGCACAAGATAAAA-AATTC s canFam1.chr9 39389969 130 - 53642819 TGCTCTTTCAATAATTCAAATTCAAGTCATTCTGCTTAAGA----AGATGTA-AACAGATAAGTCTTGCTGTTTG---TATAGGCACTTAAATATAGTATATTGAAAGGCAAG--ATTCTGGAAAATATTCAAAGCATCA a score=58165.0 s hg17.chr17_random 2477295 511 + 2618010 CAATTATGTTCATTAAACAACTAAA-ATAAAAATGTATAGTATGTGGATCAGTTCCATACATCCTC----AGGGTAT--------------------------------------------------GTATATTacttgtgaagtattgactatgtaccagacattgtgctaaatatctttttcattttcactctttattac---------aaccttataaagtagtgtacattcttattgctcttttagcagaatactcaaaagaagcattaaaaagctaaaac--aaacaaacaaaatgcttgtccaagattaaagagaaagtaagtCTAATATGTCTTAGTGTAGCCAAGAAAGTGGTAAAGAACAA-AATTTGctaagcttgctgaaactgcttcatcttcttggaatgtgtcgtctttttttgtccactctgcaaactcctactcatttgtcaaaacccagt-taaatatttcctcctcagtaatatctttcctgataaactaccccattcatttatcattatttcctgccttgtgctc----------ataatgtgatacattctactgtatcatagacgttt- s panTro1.chr19 42745002 511 - 82489036 CAATTATGTTCATTAAACAACTAAA-ATAAAAATGTATAGTATGTGGATAAGTTCCATACATCCTC----AGGGTAT--------------------------------------------------GTATATTacttgtgaagtattgactatgcaccagacattgtgctaaatatctttttaattttcactctttattac---------aaccttataaagtaatgtacattcttattgctcttttagcagaATACTCAAAAGAAGCATTAAAAAGCTAAAAC--AAACAAACAAAATGCTTGTCCAAGATTAAAGAGAAAGTAAGCCTAATATGTCTTAGTGTAGCCAAGAAAGTGGTAAAGAATAA-AATTTGCTAAGCTTGCTGAAActgcttcatcttcttggaatgtgtcgtctttttttgtccactctgcaaactcctactcatttgtcaaaacccagt-taaatatttcctcctcaacaatatctttcctgaTAAACTACCCCATTCATTTATCATTATTTCCTGCCTTGTGCTC----------ATAATGTGATACATTCTACTGTATCATAGACGTTT- s rn3.chr10 88600886 511 + 110733352 CAATGACTTTAATGAAATAATTAAA-ATCAAAATGTGCAGTATTTGAATGTGTTCCACGTACCTTTGGTGGGGGTGTAGTTTGTAAAATGTTGCTACACATTTGACCCTGTGTGTGCTGTGTGTAGGGGATATAGTTTGTAAAGTG-TAACTATGTATCAGGCACTTTG-TGATTGTATTGTATTTCTTTTGTTTTTAACAT---------AGTTCTCTGATGTGCTATTCATTCT------TCTTTTGATAGAGCGGACTAAAGAAGCACAGAGAGGCTAAAAC---------CGAAACATCTGGCCAAGAGGAAACACAACGCGAGCTGAACCTGCCTCTGAGTAGCAGAGGGAGT-GTGAAGAATTA-AGCTTGCAGCCTTTGCTGGAGGTGTTTCATCTTCTTGGAATG-------------------------------CTGCTCGCCCATCAAGACTCAGCAGAGATGTTTGCTCCTGCACGGTGTCTGTTCTGCTAAACGTCCCTCTTCACATGTCATGA--CCCTAACTT----------------CTAACTCAGCACATTCTACTTCATGATAGTGGTTT- s canFam1.chr9 39377724 482 - 53642819 CAATTATGT---------ATTTAAATGTATACACTTATGAAATATGAGATAATGCTAaaaat--------------------------------------------------------------------tactatttttg-agtgcctgttgtgtgtcaggaattttc-tgagtcttctgtaattgttaccttatttatacttcacaggggcttctaagaggtggtcaggatttttcttaattcttcag-----------------acatgaggtaactgaggcttagatagattgaAATCATG--------TAGTCAATAAGGAAGATGGTTCTTTCCTAGAATATTCAAAGACTT-ATGAGGAGTAATAATCCCATgtccttcctcatactgtttcat-ttgtgttaatgtg-ctttctcccttgtcaatttaactaactcttgctcatatataaatgtctagtctggatatcaactcatttctaatgtctttcttgac-atctaccccattcaaaatgaatctttctttcccttttgctccaagatacctgtgatataaggtatcacactctaacataattggctt a score=23571.0 s hg17.chr17_random 2477806 221 + 2618010 acttctttcattcccccatatgcaatgcaaatagcctgaaggcatgggctatgacttttctttttgttaccatgatactcagcacagagaacaccggaaataaatgtttgttgaatgaatgaaGGCTTT-TTGATGACATAGAAGCATGTAAG-GTCCTTTAAAAATGTATATATCGTTTG-ACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAGGAGAT s panTro1.chr19 42745513 221 - 82489036 ACTTCTTTCATTCCCCCATATGCAATGTAAATAGCCTGAAGGCATGGGCTATGATGTTTCTTTTTGTTACCATGATACTCAGCACAGAGAACACCGGAAATAAATGCTTGTTCAATGAATGAAGGCTTT-TTGATGACATAGAATCATGTAAG-GTCCTTTAAAAATGTATATATCATTTG-ACTTCTGGATAAAAGAGAGGAAAACATTCCAAACAAGGAGAT s canFam1.chr9 39378206 215 - 53642819 atatctttt-ttcctccagtccttctatatactccatgaggcca--gactgtcttattcatatatacaaacatggtgcctagca-----attactctgaatgaatgttaattaaatgaatgTGGGATTTATTGAAAACATAG-TGCATTTACTCACCCTTTATCATACTATAGATAATATATATGGATGGAGAAAAGAAAAAAGAATATTCAGACAATGGTGAT a score=64526.0 s hg17.chr17_random 2478027 704 + 2618010 CAGAGTTTCATTTCAGGAAAACTACAATTATTTATGTGGTAAGCAACATGTCCCCTGATAAATAGCATATGTGGAACCTTGTGGAATTAGGATTCCGTTTATAGAATGAGACTTGGTTATAGATAACCAGGAATACCATgttatcccattgtggaagggagagagggtgagacagagaaagaaggagtcaaactcatccttttataaggaacccactcttgtaataacaacattaatccactcatgagggtggtgtcaccatgacccaaacatctcctgttaggccccacctcccaacactgctgcattgaggatcaagtttccaacacatgaactttgagggacacattcataccattgcattccacccttggtcccccaaatccatgtccttctcatacacaaaatatattccttttatcccaatagtcccaaagtcatgttccatcaccaacttaaaagtcaaaatgtaaatctaagagtctcaggtgactctgatatgaatgagactcaacacaggacttatcctgaggcaaattctcctccatatgtgagcctattaaagaagttatctagttccaaaatccaatggtgggagaggcataggatagacaggcccattccaaaagggagcaacaggaaagaaaaaagggtaactggccccaggtgagtccaacagggaagacagcattaaatcttaagac s panTro1.chr19 42745734 703 - 82489036 CAGAGTTTCATTTCAGGAAAACTACAATTATTTATGTGGTAAGCAACATGTCCCCTGATAAATAGCATATGTGGAATCTTGTGGAATTAGGATTCTGTTTATTGAATGAGACTTGGTTACAGATAACCAGGAATACCATgttatcccattgtggaagggagagagggtgagacagagaaagaaggagtcaaactcatccttttataaggaacccactcttgtgataacaacattaatccactcatgagggtggtgtcaccatgacccaaacatctcctgttaggccccacctcccaacactgctgcattgaggatcaagtttccaacacatgaactttgagggacacattcaaaccattgcattccacccttggccccccaaatccatgtccttctcatacgcaaaatatattccttttatcccaatagtcccaaagtcatgttccatcaccaacttaaaagtcaaaatgtaaatctaagagtctcatgtgactctaatatgaatgagactcaacacaggacttatcctgaggcaaattctcctccatatgtgaacctattaaagaagttatctagttccaaaatccaatggtgggagaggcataggatagacaggcccattccaaaagggagcaacaggaaagaaaaaagggtaactggccccaggtgagtccaacagggaagacagca-taaatcttaagac a score=84979.0 s hg17.chr17_random 2479891 939 + 2618010 aaggatggcctttactccagtttccaattcttgttcctcatttccatctgagatctcatcagaatagcctctattgtccatatttctctcagcattctggccacgaccacctaaataacctataagaagattcatactttccctacagctattattttcttctgagccctgaccagaatcacccttaatgctctcttcatagcaTTAcagtattccttccctatctgtggatttactttccatggtttcagttacttatggtcaaccacggttctaatgtatt-aatggaagattccagaaataaacaatttgtaagttttaaattgcatgccattctgagttgtatgatgaaatatcaccaatcctgctctgtcttgcctgggacaaatgtcctccctgtgtccatactgtatacatgaccaccctttaatccccgagtaattatctcagttaccagactgactgttgtagtactgtaggatatgcagtgcttgctttcaaataaccctcattttacttaatgatggccccaaagtgcaggCTACACTAATTTGGTTGACTTGGACTTTAGAAAATAATGTCACTTaatgctattccaccataaaatcataataaaatcatgtattttgcagcaacatggatggaactggagatcattatcttaaatgaaacaaatcagacacagaaagacaaatatcgcatattctcacacatgggggctacataatgtgtgcacatggacatagagagtagaatgatagaccatggacactcagaaagcttagagagtgagagtggggttgacaatgagaaattacttaatgggtacagtttatgttactcatgtgatgatggcctaaaagctctgacttgctaattatgcaatctatgcatgcaacaaagtcacacttgtacctcaaaacttaaaaaatgaaaTAA s panTro1.chr19 42748244 939 - 82489036 aaggatggcctttactccagtttccaatttttgttccttatttccatctgagatctcatcagaatagcctctattgtccatatttctctcagcattctggccacgaccacctaaataatctataagaagattcatactttccctacagctattattttcttctgagccctgaccagaatcacccttaatgctctcttcatagcaTTAcagtattccttccctatctgtggatttactttccatggtctcagttacttatggtcaaccacggttctaatgtatttaatggaagattccagaaataaacaatttgtaagttttcaattgcatgccattctgagttgtatgatgaaatatcaccaatcctgctcagtcttgcctgggacaaatgtcctccccatgtccatactgtatatatgaccaccctttaatccccgagtaattatctcagttaccagactgactgttgcagtattgtaggatatgcagtgcttgctttcagataaccctcattttacttaataatggccccaaagtgcaggCTACACTAATTTGGTTGACTTGGACTTTAGAAAATAACGTCACTTaatgctattccgccataaaatcataataaaatcatgtattttgcagcaacatggatggaactggagatcattatcttaaatgaaacaaatcagacacagaaagacaaatatcgcatattctcacacatggaggctacataatatgtgcgtatggacatagagagtagaatgatagaccatggacactcagaaagcttagagagtgagagtggggttgacaatgagaaattacttaatgggtacagtttatgttactcatgtgatgatggcctaaaagctctgacttgctaattatgcaatctatgcatgtaacaaagtcacacttgtacctcaaaacttaaaaaa-gaaataa a score=19999.0 s hg17.chr17_random 2480830 91 + 2618010 AATAATAATGTCATTTAGCTTCTTCCCAATACATTTAAA-CATAATTAAGCATCATAGCTAAAGAATGCTTCTAAGTGATGAGGTTCAAGGC s panTro1.chr19 42749183 91 - 82489036 aATGATAATGTCATTTAGCTTCTTCCCAATACATTTAAA-CATAATTAAGCATCATAGCTAAAGAATGCTTCTAAGTGATGAGGTTCAAGGC s canFam1.chr9 39439778 91 - 53642819 AAAAATATTGCCTTTTAGCTTCTTTCCAACACATTTAAAGCATAATTAAGAATCATAACTAAAGAATGCTTCTAAGTGAT-AACTTCAAGGC a score=155736.0 s hg17.chr17_random 2480921 854 + 2618010 TCAAGTACAGAATAATA--TGATTCACTTGCAATTAGCACAAAGTACATTCACGCTAGGTTAAATATATCTTCTGTAATTACATTTACCTTCCCAATTTGTC-------CATGAATTTTGTGGAAGATGCCAATTTTCCC-TCGGTACAGGCCAGGGAAAATTAGCCTGCACATGTC---------------CCAAATTAATAAGATTTTGTTGTATGATGATCAATTATAGCAAGAAATTTAGGAAGCGTAGGAGATATTCAGGACATTGTCCTAATTCTTTTCTATGATGTAACCTGATCATCAGAATTTCAGGTAATATGTTAGTCAAGTAATGAATTATTGCCCCAACATACAATACTCCTAGGAATACATAATGCCAATAGAATAGAAT----------AGA-----GCAAAAGTGAATCACTAATGCCACAGTCTTCAATGTTCAGAATATTCACAGGGTCATGTAGGGATCGGCTTAGGGCCTTGAAGAGCCCTGTGTGACTCACAGGTGGGATCACAA-TAGCAGGTCCATGTGTGCAGATGAGCTTTATATTGGTCAGAAATGTTCTT-TTGGAAGGTCTTTGTTGGGTTTGATATAATCGGAAATTAGGAGTCCTATACAGCTATAGATCATCATTCACTTATCTATTC---AACAATGG-TGAGAACTCTCTCATTCTGTTCTACAGACTGTGCAGGAACCTCCATTCTACTTGTTCTTTAAGACTTAGGTGCTATTACCTCCACAAGCAAACCTTTCCTGATGCTCTCTGCCCAAGCCACCTCTCCCTTAAGTTGCCCTCTTCTAAGATCCTGGCAGCATGTTTCTCATGTGTTTCATATTGTTGAATTTATTGTTAG--CTTTTTGAAagctttttggagatataattg s panTro1.chr19 42749395 859 - 82489036 TCAAGTACAGAATAATA--TGATTCACTTGCAATTAGCGCAAAGTACATTCACGCTAGGTTAAATATATCTTCTGTAATTACATTTACCTTCCCAATTTGTC-------CATGAATTTTGTGGAAGATGCCAATTTTCCC-TTGGTACAGGCCAGGGAAAATTAGCCTGCACATGTC---------------CCAAATTAATAAGATTTTGTTGTATGATGATCAATTATAGCAAGACATTTAGGAAGCGTAGGAGATATTCAGGACATTGTCCTAATTCTTTTCTATGATGTAACCTGATCATCAGAATTTCAGGTAATATGTTAGTCAAGTAATGAATTATTGCCCCAACACACAATACTTCTAGGAATGCATAATGCCaatagaatagaat----------agaatagaGCAAAAGTGAATCACTAATGCCATAGTCTTCAATGTTCAGAATATTCACAGGGTCATGTAGGGATTGGCTTAGGGCCTTGAAAAGCCCTGTGTAACTCACAGGTGGGATCACAA-TAGCAGGTCCATGTGTGCAGATGAGCTTTATGTTGGCCAGAAATGTTCTT-TTGGAAGGTCTTTGTTGGGTTTGATATAATCGGAAATTAGGAGTCCTATACAGCTATAGATCATCATTCACTTATCTATTC---AACAGTGG-TGAGAACTCTCTCATTCTGTTCTACAGACTATGCAGGAACCTCCATACTACTTGTTCTTTAAGACTTAGGTGCTGTTACCTCCACAAGCAAACCTTTCCTGATGCTCTCTGCCCAAGCCACCTCTCCCTTAAGTTGCCCTCTTCTAAGATCCTGGCAGCATGTTTCTCATGTGTTTCATATTGTTGAATTTATTGTTAG--CTTTTTGAAagctttttggagatataattg s canFam1.chr9 39439869 858 - 53642819 ATAGGTACAGAATAATACCTGATTCACTTGCAATTAGCGTTAAGTAGGTCCACTTTGAGTTAAATATAACTTCTGTAATTATATTCACCATCTCAATTTGCCTTACAAACAATAATTTTATTGAAGATGCCAAATTTCATGTGGGTGCAGGCCAGGAAAAATTACCCTACACATGTCCCTGATGGAATGTGTCCAAATTAATGATATTTTATTGTGCAAATGTC----ATAGCAAGAGATCTAAAGGATGTAGGAGACATTCAGGACATTGTCCTAATCCTTTTCTGAGGGATGG---------------TTCAGGTAATGTGTCAGCCAACTGATGGATTATTGCCCCAATACATGACACTCCCAGGAATGTATAATGTCCTTAGAATTGAATTACTGTCCTGGGA-----GTGAAAGTGAGTCACTGATTTCACAGTCTTAAATGTTTAGAATATGCACAATATCATGTAGGGATTGTGTTGCAGCCTTAAAAGCCCCCAAGTGATTCACAGTTGGGATCATAATTAATAGGCCCATGTTTGCAGATAAGCTACATGTTAGTTAGAAATATTCTTCTTGAAAGGTCTTTATTGGGTTTGATAGAATCATAAAACTAGAGTCCTATAGAGTTGTAGATTGTCACTCATTGTTATATTTTCAAACAGCAGTTGAAAGCTTCCCTATTCTCTTGCAGGCTCTATGCATGAACCTCCATAGTACTTGTTCTTTAAGACTCTGGTGTTAATACCTCCTCCAACAAACCCTTCCTGATAGTCTCCACCCAAACTACCTCT-----------CCCTCTTCTAATATTCTGG-AGTATATTCCTTGTGTGTTTTACATTGTT-------TTATCAGCACTTTTCTTAAGCTTCTT-AAGATACTAATG a score=166123.0 s hg17.chr17_random 2481775 1831 + 2618010 acaagtaaaaattgcatatattcaaggtgtacaaaataatgttttgatatacatatacattgtgaagtagatgaccacaatcaaactaattaacatatcaatcacctcacatagttattctttttgtggtgaaaatacttatgttctagcaaatttcaagtgtacaatacagtattgttaactatagtcacattgccatacattcaatttccagaacttactgattttggatagctgaaactttatactctttgaccaacgtctaccagtttcttcctcattccaccccatgcaaccaccatataagtcagatcatgcagtatcggtctttgtgtgtctagcttatttcacttagcttaatgtcctctgggttcatccatgttgttataaatgacaggattttcttccttttaaaggctgaattgcattttgaataatgacatttatatacattttctttatccactcatctgtggatgggcatatagatatttctgtatcttagtagctgtgaataatgctgcaatgtacatacaagtgcagatatcttcaagatagtgattttatttactttggatatgtatccagaagtggaattgctggttcacaggtgagttctatttttaattttttgaggagcctccatactgttttccataatggctgcatcaagttacattcccaccaacaatgtataagagttccctttacaccacatccttgccaacacttatcttttgactttttgataacagccatcctaacaggcatgaggtaatatcttattgtggttttcattatcacttccctgatgattagtgatgttgagcaccttttcaAAGACTACATTTGACAGTAATTTAGAATTCTCAGGTCAattgggaagttggaacacaaagggagaggaagaatggtggctgttggatagagagggatgtaagagctaaattctcatcacacataacagtgggccaatagataatatctaaactttaaaagtcaagaaatagtactgtaaccacaccatttagaaagatCTTttttcctagagttctccctccaaaatcttcatcttactgttctcctctgcactgattgctttctaggcttgctgtacggttgccatttttggatttaccttgaatgcaattctgattttctgacttgaaattcctgttttctgaatctgtgttctcctctttgtcaacttcttcttcatgttggtggtgcacatcctccagacgttactttagaaagggttcacggacaataaggatttttttgggcttttcatatctgaaaatgttactattcctttgtttctgtttggtagtttggccaggcatggaattctaggctaaaaaacatcccactgagaaattttaaggcatttcccattgtcttctggcttccggtgttgatgttgaaaagtgtgatgccatttcgcctcctgaaccttggtatgggaaccacatattattttcctcattggacgcttttagtaccattttcatatccctaatattctgagatttcacagtgatgtatcttgatgtaagccttacattcactgttctcagcgctggtggtcttttaatctggagctcccttctgaaagaaattttcttatactatttctttgat-agttttctcccttgtatttccttccttcctt------------cttctttccttccctccctcccttcctctttctctatttccctttcttcctgtcttccttcc-tttctttttcttccttgtctttctttcttttccttccttcctctttctctttctttctctcctttccttcctccctctcttctttccttccttc s panTro1.chr19 42750254 1844 - 82489036 acaagtaaaaattgcatatattcaaggtgtacaaaataatgttttgatatacatatacattgtgaaatagatgaccacaatcaaactaattaacatatcaatcacctcacatagttattctttttgtggtgaaaatacttatgttctagcaaatttcaagtgtacaatacagtattgttaactatagtcacattgccatacattcaatttccagaacttactgattttggatagctgaaactttatactctttgaccaacatctacccatttcttcctcattccaccccaggcaaccaccatataagtcagatcatgcagtatcggtctttgtgtgtctagcttatttcacttagcttaatgtcctctgggttcatccatgttgttataaatgacaggattttcttctttttaaaggctgaattgcattttgaataatgacatttatatacattttctttatccactcatctgtggatgggcatgtagatatttctgtatcttagtagttgtgaataatgctgcaatgtacatacaagtgcagatatcttcaagatagtgattttatttactttggatatgtatccagaagtggaattcctggttcacaggtgagttctatttttaattttttgaggagcctccatactgttttccataatggctgcatcaagttacattcccaacaacaatgtataagagttccctttacaccacatccttgccaacacttatcttttgactttttgataatagccatcctaacaggcatgaggtaatatcttattgtggttttcattatcacttccctgatgattagtgatgttgagcaccttttcaAAGACTACATTTGACAGTACTTTAGAATTCTCAGGTCAGttgggaagttggaacacaaagggagaggaagaatggtggctgttggatagagagggatgtaagagctaaattctcgtcacacataacagtgggccaatagataatatctaaactttaaaagtcaagaaatagtagtgtaaccacaccatttagaaagatc-tttttcctagagttctccctccaaaatcctcatctttctgttctcctctgcactgattgctttctaggcttgatgtacggttgccatttttggatttaccttgaatgcaattctgattttctgacttgaaattcctgttttctgaatctgtgttctcctctttgtcaacttcttcttcatgttggtggtgcacatcctccagacgttactttagaaagggtgcagggacaataaggatttttttggacttttcatatctgaaaatgttactattcctttgtttctgtttggtagtttggccaggcatggaattctaggctaaaaaacatcccactgagaaattttaaggcatttcccattgtcttctggcttccggtgttgatgttgaaaagtgtgatgccatttcacctcctgaaccttggtatgggaaccacatattattttcctcattggacgcttttagtaccattttcatatccctaatattctgagatttcacagtgatgtatcttgatgtgagccttacattcactgttctcagtgctggtggtcttttaatctggagctcccctctgaaagaaattttcttatactatttctttgataagttttctcccttgtatttccttccttccttccttcttccttccttccttccctccctccctcccttcctctttctctatttccctttcttcctgtcttccttccttttctttttcttccttgtctttctttcttttccttccttcctctttctctttctttctctcctttccttcctccctcccttctttccttccttc a score=279560.0 s hg17.chr17_random 2483606 3140 + 2618010 ctccctccttccttcccttcttccttccttcccttcttccttccttcccttcttccttccttctcttccttccttcccttcttccttccttcccttcttcctttc-----ttcctttctttctttctttctttctttctttctttttctttctttctttcttt-tctttctctttctctctctctctttctctctctctttctttctttctcccttcccttcctGTCttcttttttccttttgagacaagacttctctatgttgcccaggctggcttcaaatccctgggcccaagggaccctctcacctcagcctcccaagtaactgggactataggcacaggcaaccATTACACCTGACTCCTTATGttttctcatttgtctttctaaaatttttcttcattgagtggtagatctcctgaattgatcctctgtgttattatagtttctttaatgtccatttctttcacttctttttataatttttttt-acatatcttcaagacaggagaacaaattatttgactccttgttctactttaccttccaaacattttactgaacgtttttctaattttttctatcacattttaattctcaagctttcactcaacttctctgactgctcctgtttcttagaatcttgtttttatttcaaacagaatttcttctcttagctctcttgagtattttatttacaatagttcttgttttacaattttttagttctattctgctccctgtagtttctattcctgtcaaatttgtttttccccctttttctttttttctttttaaattagtgtgaattgtcaggctggagacatttcccaagtgtctgaagcatattggttaacatggcactaaaaagccaattgaaagttctgtgtggacagcagggcttgttaattgatctcttcacctctcctccccttcatccacaaaaaagaagtcaagatttatatgtttagtttctttagaggagaatcttccaatatcctgcttggaaagcttatggccatcag--tcctggatgctgagcacagtgctcagattttcactgcatgagtctgttttctgttctattcttgacttttgttcactttagtattcccaaatctggagtctctgtcactaaattttctggaagataacccttgtttctcctggttggaagtgggggaggcctaatgaccaactttgtagggtggggtagggatccaggggtcgaaGCATCCTGCTGCCTACCCTGCCTTCAGGTGTATTACCTGGTGACTCCGGGTTCTGAGCCTTTCTGAGGATTCAAGGAAAACCAACTTTACACTCTGTGGTACTCTCTCTGTATGCATTCACATTGTAGCTCCTTTTGTTATCTTTAGTTGACCACCATTGCTCTTGCCCCAAATTTGCTACACTTTCTTATCTGCTATTGTCTCCTGTCCTGAGAAAGTAAGATGAGGGTTTCTGTTTTTTAACACCTTTTAAAAGTTGGTGTATCATAATGGATTCAAAGAGGATAAGAGGACATAAAAGTTAATTTTCTGACATTTTAAGGACCTGCTATTACTAAACTGTTAAAATTAGACTTAGTATCTCATATATACACTCCCCCTTAAGTGTTCCTGAAGTAAACTAGTGCCCATGCTCCAGATGTTGGTGAGATTCTTTCTCTGTGTTTCCAAAGCATGTTAAATAATCCTGAAGGTTAATTTTATTTTCCAATATTTTATTCACGCCTAAACTGCATTGAAGGGCAAAAAAAATTGTGgcatgcctgtggtcccagctacttgggaggctgaggtggcaggatggcttgagtccaggagttggagcttgcagtgagctgaaatggtgccaccacactccagcttaggtgacagaatcagaccctgtTATTTTGatccacacaagctattggtcatgtgtgaaggcaatggaaagatttcctcatagattcaaggactcgggatatataacttccctttaaaattcctttaagaaatattcccattgactgaaatacaagtcaaaataaagaattcCATTACAGTATAGATGTCATGCATAAAATAATGGTTCTGAGAGATGAAGCTGATAAAATTTAAAAAGATTCAAATATATTCTAAAAGTGGTAGGGGATAAAAA-TAGCAAAGAATACACAAGTGGTAGGCAAATTAAAAAATGGGGTAACAATACCTATATTTTCTGGTAATAAAGTgggtgtggtggcttgcacctgtaatcccagcactttgggagaccgaggtgggtggattgcttgagctcaggagttcaagaccaacctgggcaacatagtgagaccctgtctccacaaaaaatacaaaaattaactagacatggtggtgcatgcctgcggtcctagctacttgggaggctgaagtagctaggggaggttggcttgagccgtggagttgaattttgcagtgagctgacatggtgccactgcacaccaacttaggtgacagagccagatcctgtcttttaaaaaaaggaaaaaaTTCAAAAATGAAGATAACATATTTATAAATGTTTATGTGCCATAGAAGAGATCATAGAAATGAATAAAACAAATACAGTTTTGCAATATGCAGATATGACAGAATAGGCATCATTACTAGTTTGAGGCTCTGATAGATTTCTCAGGCCTAGGTACTTAAGCAATACTGAAACGAGAAACAGCTTGTATAGACCATTTATGGTCCTGGAATAAATTGAAGAGGGATGCCTGAGCCCAAAGATACGATTCTCACGTCGCATTACCATATCAATTTCTGAATATGTTGTTTTGAGTTTTGTGCTTACTTTACTTTTTTATTTTCCTCTTCAGCTAAAAGTTTTGCCTAGAGCTCTTGAGCCTACTGATATCATTTTGATTGATATCATTTTGAAATGGAAGGAAATGGCTTGAAAAGACACAGGAAATACAATATGAACTGAACTCCCAATGCAAAAGGGAATCTCAAAGTTATAAAGGAAACACAGGTAGCTGGGTGACTTGATCCAGGTCATGTGGAGTGAGCCCTAACCTTTGCATGTCTCATAGGTAGACCTGCATGCAAATTCTGCAATTGGAGCTTTAATGGAGCATGAGTGGATGAATATCATTAATGGGTCAGTGAAGCATCT s panTro1.chr19 42752205 3130 - 82489036 Ctccctccttccttcccttcttccttcc----cttcttccttcct-------------ctttcacgtgcttccttcccttcttcctttctttctttcttccttTAAGGGGTTtctttctctttctctctctctctttctctctctctctctctctctctctctctctctctctctctctctttctctttctctctctctTTATTTCTTTGGCGCTTCCCTTCCTGtcttcttttttccttttgagacaagacttctctatgttgcccaggctggcttcaaatccctgggcccaagggaccctctcacctcagcctcccaagtaactgggactacaggcacaggccaccATTACACCTGAttccttatgttttctcatttgtctttctaaaatttttcttcattgagtggtagatctcctgaattgatcctctgtgttattatagtttctttaatgtccatttatttcacttctttttataatttttttttacatatcttcaagacaggagaacaaattatttgacttcttgttctactttaccttccaaacattttactgaacgtttttctaattttttctatcacattttaattctcaaggtttcactcaacttctctgactgctcctgtttcttagaatcttgtttttatttcaaaca--atttcttctcttagctctcttgagtattttatttacaatagttcttgttttataattttttagttctattctgctccctgtagtttctattcctgtcaaatttgtttttccccctttttctttttttctttttaaattactgtgaattgtcaggctggagacatttccaaagtgtctgcagcatattggttaacatggcactaaaaagccaattgaaagttctgtgtggacagcagggcttgttaattgatctcttcacctctcctccccttcatccacaaaaaggaagtcaagatttatatgtttagtttctttagaggagaatcttccaatatcctgcttggaaggcttatggccatcagagtcctggatgctgagcacagtgctcagattttcactgcatgagtctgttttctgttctattcttgacttttgttcactctagtattcccaaatctggagtctctgtcactaaattttctggaagataacccttgtttctcctggttggaagtgggggaagcctaatgaccaactttgtagggtggggtagggatccaggggtcaaagcagcctgctgcctaccctgccttcaggggtattacctggtgactccgggttctgagcctttctgaggattcAAGGAAAACCAGCTTTACACTCTGTGGTACTCTCTCTGCATGCATTCACATTGTAGCTCCTTTTGTTATCTTTAGTTGACCACCATTGCTCTTGCCCCAAATTTGCTACACTTTCTTATCTGCTATTGTCTCCTGTCCTGAGAAAGTAAGATGAGGGTTTCTGTTTTTTAACACCTTTTAAAAGTTGGTGTATCATAATGGATTCAAAGAGGATAAGAGGACATAAAAGTTAATTTTCTGACATTTTAAGGACCTGCTATTACTAAACTGTTAAAATTAGACTTAGTATCTCATATATACACTCCCCCTTAAATGTTCCTGAAGTAAACTAGTTCCCATGCTCCAGATGTTGGTGAGATTCTTTCTCTGTGTTTCCAAAGCATGTTAAATAATCCTGAAGGTTAATTTTATTTTTCAATATTTTATTCACGCCTAAACTGCATTGAAGGGTGAAAAAA-TTGTGgcatgcctgtggtcccagctacttgggaggctgaggtgggaggatggcttgagtccaggagttggagcttgcagtgagctgaaatggtgccaccacactccagcttaggtgacagaaccagaccctgtTATTTTGatccacacaagctattggtcatgtgtgaaggcaatggaaagatttcctcatagattcaaggactcgggatatataacttccctttaaaattcctttaagaaatattcccattgactgaaatacaagtcaaaataaagaattcCATTACAGTATAGATGTCATGCATAAAATAATGGTTCTGAGAGATGAAGCTGATAAAATTTTAAAAGATTCAAATATATTCTAAAAGTGGTAGGGGACAAAAAATAGCAAAGAATACACAAGTGGTAGGCAAATTAAAAAATGGGGTAACAATACCTATATTTTCTGGTAATAAAGTgggtgtggtggctcgcacctgtaatcccagcactttgggagaccgaggtgggtggattgcttgagctcaggagttcaagaccaacctgggcaacatagtgagaccctgtctttacaaaaaatacaaaaattagctagacatggtggtgcatgcctgcagtcctagctacttgggaggctgaagtagctaggggaggttggcttgagccatggagctgaattttgcagtgagctgacatggtgccactgcactccaacttaggtgacagggccagatcctgtcttttaaaaaaaggaaaaaaTTCAAAAATGAAGATAACATATTTATAAATGTTTATGTGCCATAGAAGAGGTCACAGAAATGAACAAAACAAATACAGTTTTGCAATATGCAGATATGACAGAATAGGCATCATTACTAGTTTGAGGCTCTGATAGATTTCTCAGGCCTAGGTACTTAAGCAATACTGAAATGAGAAACAGCTTGTATAGACCATTTATGGTCCTGGAATAAATTGAAGAGGGATGCCTGAGCCCAAAGATACGATTCTCACGTCGCATTACCATATCAATTTCTGAATATGTTGTTTTGAGTTTTTTGCTTACTTTACTTTTTTATTTTCCTCTTCAGCTAAAAGTTTTGCCTAGAGCTCTTGAGCCTACTGATATCATTTTGATTGATATCATTTTGAAATGGAAGGAAATGGCTTGAAAAGACACAGGAAATACAATATGAACTGAACTCCCAATGCAAAAGGGAATCTCAAAGTTATAAAGGAAACACAGGTAGCTGGGTGACTTGATCCAGGTCATGTGGAGTGAGCCCTAACCTTTGCATGTCTCATAGGTAGACCTGCATGCAAACTCTGCAATTGGAGCTTTAATGGAGCATGAGTGGATGAATATCATTAATGGGTCAGTGAAGCATCT a score=22822.0 s hg17.chr17_random 2486746 168 + 2618010 CAAAAATAGAACTCATCTGCAAT-TCCAATTTGGTTTCCATCACTTTCTTTCCCATAATGACGTGTTTCATCACTCATGCTCGCTGATTTTCCCACTGACTCTATGGCTTCAGCCTAAAAT-TATGCCTCTTATTTTTCCATAGAACTCA-CCATGAATTAATC-TTGACAT s panTro1.chr19 42755335 168 - 82489036 CAAAAATAGAACTCAACTGCAAT-TCCAATTTGGTTTCCATCACTTTCTTTCCCATAATGACGTGTTTCATCACTCATGCTCGCTGATTTTCCCACTGACTGTATGGCTTCAGCCTAAAAT-TATGCCTCTTATTTTTCCATAGAACTCA-CCATGAATTAATC-TTGACAT s canFam1.chr9 39443782 159 - 53642819 CAAAAATGAAACGCAACCATAATCTCCAAC----------TAACTTTCCTTCCCATAA--ACATGTGTCACCCACCGTACTAACTTA-TCTCCTACTGCATCTGTAGTTTCAACTGAGAATCTCTGGCTCTTGTCTTCTCATTGTTCCAATCTGTGAATTAATTATTGAAGT a score=78574.0 s hg17.chr17_random 2486914 278 + 2618010 ATCCCTCCTCCTTAAAAGGACTATAATTTTT--TAAATGTCTTTTTAATAAGACTACCCTTCATAAAGATATAAATATTCGGCTGTGATCTGAT--TCTCCTTCACATAATCTTACGTGTTTGAGACCTGTGCATGTTAACCTGAATTTTCAGAATTGACACATTTTATTTCTATGAATCAATCCTTACGTATGTATTACTTTTCTCCAATAGAATAGAGTCCTTTTTCTCACTAATATTACCAACATACTCTCCCTGACATATGCATTTAAATTAAATTCA s panTro1.chr19 42755503 277 - 82489036 ATCCCTCCTCCTTAAAAGGACTATAATTTTT---AAATGTCTTTTTAATAAGACTAGCCTTCATAAAGATATAAATATTCGGCTGTGATCTGAT--TCTCCTTCACATAATCTTACGTGTTTGAGACCTGTGCATGTTAACCTGAATTTTCAGAATTGACACATTTTATTTCTATGAATCAATCCTTACGTATGTATTACTTTTCTCTAATAGAATAGAGTCCTTTTTCTCACTAATATTACCAAAATACTCTCCCTGACATATGCATTTAAATTAAATTCA s mm5.chr11 99516971 243 + 121648857 ATCCCCTCTCTTTGAAAGTACCATAATGT-------------------TAATAGTTCCTTTCATAAGATCATGAACATCTAGCCCTTATTCAGT--TCATTTTGGC----TTTTTTGTGGTTCACGCATTTGCAAGCTGTTC----ATTTTAGACTTGAGTGATTTTATTTCTTTGAATTAA----CATTTGTATATTACACTTCTCTCATAGAATG------CTTTTCACACCAATATTACTGCCATGGTTTGCCTGGCATAGATCTTCCTGTCAAGTTCA s rn3.chr10 88798023 242 + 110733352 ATCCCTTCTCTTTGAAAGTACCACTATGT-------------------TACTAGTTCCTTTCATAAGATTATGAACATCTAGCCCCCATTCAGT--TTGTTTTGAC-----TTTTTGTGGCTCATGCGTTTGTAAGCTGTAC----ATTTTAGACTTGAGTGATTTTATTTCTGTAAATCAA----CAATTGTACATTACACTTCTCTCATAGAATG------CTTTTCACATCAGTATTACTGCCATAGTCTGCCTGGCATAGATCTTCCTATAAAATTCG s canFam1.chr9 39443941 250 - 53642819 ACTTCTACTCCTTAACTGG-TTATTATGTTTTCTTGGTACTTTTTAAATAAAGATTGCCTTCACAAAAATATAAACACTCCACT-TTACCCAATTCTCTCCTTCACTTTGTCTTATGTGTCTGTTAGCTGAATACCTACCCCTGAGTTTTCAAACCTGACACATTTCATTTCTAGGAATCAG----TCCTTAACTGTTACTCTTCTC--------------------------CAGTATTATCAACACActgtacctgacatttctcttcctgttaaattca a score=964.0 s hg17.chr17_random 2487192 5 + 2618010 TGATT s panTro1.chr19 42755780 5 - 82489036 TGATT s canFam1.chr9 39444191 5 - 53642819 agatt a score=31326.0 s hg17.chr17_random 2487197 347 + 2618010 AATTGAATTAATTGAGTGGAGAGGGAAAGGAAAGAAAAATAACTTTCAgaccacgtgtggtggctcaagcctgtaataccagcactttaggaggccgaggcaggtggatcacctcagttcaggagttcaagaccagcctgatgaacatgaagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggttcatgcctgtaatcccagctacttgggaggctgaggcaagagaatcacttgaacccgagaggcagaggttgccatgagctgagatcatgccactgcactccagcctgggaaacaagagcgaaaccccatctcaaaaaaaaaaaaaaaaa---- s panTro1.chr19 42755785 351 - 82489036 AATTGAATTAATTGAGTGGAGAGGGAAAGGAAAGAAAAATAACTTTCAgaccaggtgtggtggctcatgcctgtaataccagcactttaggaggccgaggcaggcggatcacctcagttcaggagttcgagaccagcctgacgaacatgaagaaaccccgtctctactaaaaatacaaaattagccgggcatggtggttcatgcctgtaatcccagctacttgggaggctgaggcaagagaatcacttgaacccgagaggcagaggttgccgtgagctgagatcatgccactgcactccaacctgggaaacaagagtgaaaccccatctcaaaaaaaaaaaaaaaaaaaaa a score=546.0 s hg17.chr17_random 2487544 1 + 2618010 T s panTro1.chr19 42756136 1 - 82489036 T s mm5.chr11 99517216 1 + 121648857 T s rn3.chr10 88798267 1 + 110733352 T a score=176300.0 s hg17.chr17_random 2487545 568 + 2618010 CCATGATTATGTTGTGAGTTACCTAA--GGGAAAAGAAGTGGGTCTCATTCATTTTATGCAATTCCCAGAGCCCAA------TAG-----------CTTGCTAATTT----------------------GTTCTTAATTTAATTACAGTAAAAATTG----AGTTCTTGTTTTGTCTCAATAAACTTGATGGCAGGTAAAGTGAGCAATCTGTTTTGGATTAAAA-----AATGAATTATTTGGC-ATTTTCTCTAATACAGGCTTTGGCTGATACATATAATATCAATTTTTTTGTTATTGCCCATACAATAGGAACTCAAAC-CATTTTACAAAT-AAATAATCAACAGTAAGAAATACTGAAAGGTCACAAATGTTTTTGATACCAAGAG----AGTGTTTATTGAGATATAGTTACTCTACCA-GACGTAA-TTCATTGCAAAGTCCAGACCACACTCGGCAATTGTAAGCTTAGAAGCCTGTTCCAATGAAATAGTGTGAGATATCTGGTCATCTGACTGCACACCAAGCATAGAAGT--------TGGAGGTTTTGTACGATA-TGCATTTAAATTTTTGCTTTTAAAATAGTTGCTTGGTGGAATGAACAATGAGCTATATAAATGTAG s panTro1.chr19 42756137 568 - 82489036 CCATGATTATGTTGTGAGTTACCTAA--GGGACAAGAAGTGGGTCTCATTCATTTTATGCAATTCCCAGAACCCAA------TAG-----------CTTGCTAATTG----------------------GTTCTTAATTTAATTACAGTAAAAATTG----AGTTCTTGTTTTGTCTCAATAAACTTGATGGCAGGTAAAATGAGCAATCTGTTTTGGATAAAAA-----AATGAATTATTTGGC-ATTTTCTCTAATACGGGCTTTGGCTGATACATATAATATCAATTTTTTTGTTATTGCCCATACAATAGGAACTCAAAC-CATTTTACAAAT-AAATAATCAACAGTAAGAAATACTGAAAGGTCACAAATGTTTTTGATACCAAAAG----AGTGTTTATTGAGATATAGTTACTCTACTA-GACGTAA-TTCATTGCAAAGTCCAGACCACACTCGGCAATTGTAAGCTTAGAAGCCTGTTCCAATGAAATAGTGTGAGATATCTGGTCATCTGACTGCACACCAAGCATAGAAGT--------TGGAGGTTTTGTAAGATA-TGCATTTAAATTGTTGCTTTTAAAATAGTTGCTTGGTGGAATGAACAATGAGCTATATAAATGTAG s mm5.chr11 99517217 577 + 121648857 CCCAGACTGCACAGTGAATTATCTAAAGAGGATAGGAACATGGTCTCAGGCAGCATGTGCTCTTGCCACAGCCCAAGACTATTGG-----------TCAGCCCATAGACAAAAACCAATGAGAAAAAAAGTTACTGGTTTTATTATTATTATTATTATTATTATTATTATTATTATTAAATAAGCTTGAAAGT-----AAGTGGGAAATCTGGCTTGGGGAAAAAA---CAACTAATGATTTGGCAATTTTCTTTCATATAGAACTTGATGGACATATAAA-----AATTTTATTTTCTTTATTTAGATCACAGAAATGCAAACATATTTCTCAAAT-AAAAAATAAATGCTAAAAA-----TAAAGTTTACAAATGTGTATGATACCAATAA----AGCATTTACAGGGACATAG----CCTATCA-TAAAGAATTTCATAAAAAAGGCGA----------GTTATGTGCAATAGCAGGAGCCTGCTCCAGTGAAATAGTGTGACACATCAGGTCATCTGACAGAATGCCATGACCATAGGCA-------TGATAGTTCCATATGGCATTGGCTTTAAAAATTGGCTTT--AAGTAGTTGATTGATATCATGACCAGTGGGTGA-ATACATATAG s rn3.chr10 88798268 545 + 110733352 CCCAGATTGCACAGTGAATTATCTAAAGAAGATAGGAA-TTGGTCTCAGACAACATATGCTCTTGCCACAGCCCAG--------G-----------ATTGTTGGTCA----------------------GTCCATAGTCAAAAACCAGTGAGAAAGA----AGTTACTGGACTTTTAAAATAAACTTGAAAGT----AAAATGAGAAATCTGGCTTGGGGGAAAAAACCCAAGTAATGATTTGGCAATTTTCTTTCCAGTAGAATTTAATGGACATATAAA-----AATTTTATTTTCTTTATTTGGACCACAGAAATACAAACATTTTTCTCAAATGAAAAAATAAATGCTAAAAA-----TAAAGTTTACAAATGTTTATGATACCCATAA----AGCATTTACAGGAACATAA----CCTATCACAAAGCGA-TCTGTATAAAAGGCGA----------GTTAAGTGCAATAGCAGAAGCCTGCTGTAGTGAACTAGTGTGACATATCAGGTCGTCTGACAGAAAGCCATGGCCATAGACG-------TGATAGTTCCATGTGGCATTGGCTTAAAAATGTT--TTT--AAGTAGTTGCTTGATATCATGATCCATGGGTGA-ATGCACACAG s canFam1.chr9 39444196 567 - 53642819 --------ccattgtgaactacatga--gggatgggaactggatctcatatagcatgtgtacttcccagagcccaa------tagcacaCAAAAACCTTGCTAGGTG----------------------GTCTATAATTCAATTTCTAATAAAAAGA----CATTCTTGTTTTCTCTCCATAAACTTGTTGACAGGTAAGGTGGATAATATGATTTTGGGGGAA------ATTTAATTATTT-GC-ATTTTCTCTAACATAGGCTTTGATTGATATGTGCA-----AAATTAGTTTTCTTTGTTTGCCTGAGAGAAGCTCAAAC--TTATCTCCAGT-TCATAACCAACATTAAAAAATAATTAAGGACCACAAATGTTTCTGACACCAAGAGAGTAAGTATTTATTGAGACATAGTTATTCTGTCA-CACATGA-TTCATTGTAAAGGCCAAGCCATGCACAGCAATCATAAGATTAGGAGCCTGTCCCCATGAAGTAGTGT---------AGACATTTGACTGAATGCCAAAGAAATAGGCATAGAACTTGGAGGGTCTGTGTGGTATTTAGTTTAGATTGTTGCTCTTTAAATAGTTGGTTGGTGGCATAACCAATGGGATAAATAAATATAG a score=21640.0 s hg17.chr17_random 2488113 45 + 2618010 TGG-------TGGATCAGGGCAAGGCCAGGTCCAGTGGAGAAGGGGAATGAG s panTro1.chr19 42756705 45 - 82489036 TGG-------TGGATCAGGGCAAGGCCAGGTCCAGTGGAGAAGGGGAATGAG s mm5.chr11 99517794 52 + 121648857 TAGCAGGTAACAGGTCAGAGCAAGGCCAAGTGTGGTAGACAAAAGAAATGAA s rn3.chr10 88798813 52 + 110733352 TAGCAGGTAACAGGTCAGAACAAGGCCAAGTGTAGTAGACAAAGGAAATGAA s canFam1.chr9 39444763 45 - 53642819 TGA-------CAAATCAGAACAGGGCCAGATGCTGTGGACAAAAGAAATGAG s danRer1.chrUn 44299226 44 + 367113659 TGG-------GGGAGGGATGGAGGGCCAGGACCA-TGCAGCTGGGGCATACc a score=30795.0 s hg17.chr17_random 2488158 90 + 2618010 AATG--ACTGGTACACTGACAACAAGGTGGTTGAACCAGGGCTGGTG-----GTCAGGAATGAAGTTCAACAGCAAGAGG--------ATTCATAGGAGACTGGA s panTro1.chr19 42756750 90 - 82489036 AACG--ACTGGTACACTGACAACAAGGTGGCTGAACCAGGGCTGGTG-----GTCAGGAATGAAGTTCAACAGCAAGAGG--------ATTCATAGGAGACTGGA s mm5.chr11 99517846 87 + 121648857 GAAG--TCTGGTGCTTAGGCAACATGTTGGTTGGCCTGAGAGTAGTG-----GTCAGGAAAGAAATTCAA---CAAGACG--------ATCCACAGGAGAGTGGG s rn3.chr10 88798865 87 + 110733352 GATG--TCTGATACTCAGACAACATGTTGGCTGGCCTGAGAGTAGTG-----GTCAGAGATGAAATTCAA---CAAGATG--------ATGCACAGGAGGGTGGG s canFam1.chr9 39444808 92 - 53642819 AACAATACCAATATATTGGCATGATGGTGTTTAATTCAGGGCTGGTG-----GTGAAGAGCAAATTTCAACAATAAGAGG--------ATCCACAGCATATTTGG s danRer1.chrUn 44299432 98 + 367113659 -AGG--GCCTGGATCGTGAGGCTGCGACCATTGAGGCAGCTTAGGTGGCAGCGCCATTCAGGAAGTTCAG---CAGGCGGCGGCGGCCATTCA-GGAAGCCCAGG a score=3001.0 s hg17.chr17_random 2488248 5 + 2618010 CCACA s panTro1.chr19 42756840 5 - 82489036 CCACA s mm5.chr11 99517933 5 + 121648857 TGACA s rn3.chr10 88798952 5 + 110733352 TGACA s canFam1.chr9 39444900 5 - 53642819 CAACA s fr1.chrUn 46211626 5 - 349519338 CTACA s danRer1.chrUn 44299530 5 + 367113659 AGGCG a score=23752.0 s hg17.chr17_random 2488253 66 + 2618010 GCAGGTGGTCTGGTAGCAG---------------ACTGGACAGCAGCAGCTGGACACACAGCAGCCAG----GG------------TGGCAGCAGCT s panTro1.chr19 42756845 66 - 82489036 GCAGGTGGTCTGGTAGCAG---------------ACTGGACAGCAGCAGCTGGACACACAGCAGCCAG----GG------------TGGCAGCAGCT s mm5.chr11 99517938 51 + 121648857 ACAGGTGACCTGCCAAGGG---------------ACTGGATGGCAGCAGCTAGAT-------------------------------TTACAGTAGCT s rn3.chr10 88802361 78 + 110733352 GCAGGTAGTCTGGCAACAG---------------ACTGGACGGCAGCAGCTGGACACACCACAGCTAG----GGCGACAGGTGGTCTGGCAACAGAC s canFam1.chr9 39444905 81 - 53642819 GAAGGTGGTATGGCAGCAGGGGATCTGATAGCATGCTGGGCAGAAGCAGCTGGAGCCATAGCAGGAAA----GG------------TGGCAGCAGCT s fr1.chrUn 46211631 51 - 349519338 GCAG------TAGCAGCAG---------------------CAGCAGTAGTAGCAGCTACAGCAGCAG-------------------CAGCAGCAGCT s danRer1.chrUn 44299535 60 + 367113659 GCGGCCATTCAGGAAGCTC---------------AGGAGGCGGCAGCCATT----------CAGGAGGTTCAGG------------AGGCGGCAGCT a score=0.0 s hg17.chr17_random 2488319 10 + 2618010 AGAAGTGCAG a score=669.0 s hg17.chr17_random 2488319 9 + 2618010 AGAAGTGCA s panTro1.chr19 42756911 9 - 82489036 AGAAGTGCA s mm5.chr11 99517989 9 + 121648857 GGACACACA s rn3.chr10 88802439 9 + 110733352 TGGGCGGCA s canFam1.chr9 39444986 9 - 53642819 GGACACATA s fr1.chrUn 46211682 9 - 349519338 ACATCAGCA a score=1500.0 s hg17.chr17_random 2488328 1 + 2618010 G s panTro1.chr19 42756920 1 - 82489036 G s mm5.chr11 99517998 1 + 121648857 G s rn3.chr10 88802448 1 + 110733352 G s canFam1.chr9 39444995 1 - 53642819 G s fr1.chrUn 46211244 1 - 349519338 G a score=0.0 s hg17.chr17_random 2488328 1 + 2618010 G a score=4827.0 s hg17.chr17_random 2488329 3 + 2618010 CAG s panTro1.chr19 42756921 3 - 82489036 CAG s mm5.chr11 99517999 3 + 121648857 CAG s rn3.chr10 88802449 3 + 110733352 CAG s canFam1.chr9 39444996 3 - 53642819 CAG s fr1.chrUn 46211245 3 - 349519338 CAG s danRer1.chrUn 44299595 3 + 367113659 CTG a score=1329.0 s hg17.chr17_random 2488329 73 + 2618010 CAGAAGGG--TGGCAGC---AGGAGGGCTGGTAGTACTGGGGATTATAACAGCTGGGCCTGGAGCAGGTGGACACACT s danRer1.chrUn 44299595 74 + 367113659 CTGGAGGGTCTGGCAGCTCTGGAGGGTCTGGCAGCTCTGGAGGGTCTGGCAGCT----CTGGAGGGTCTGGCAGCTCT a score=8727.0 s hg17.chr17_random 2488332 70 + 2618010 AAGGGT-------------GGCAGCA---------------GGAGGGCTGGTAGTA------CTGGGGATTATAACAGCTGGGCCTGGAGCAGG---------------TGGACACACT s panTro1.chr19 42756924 70 - 82489036 AAGGGT-------------GGCAGCA---------------GGAGGGCTGGTAGTA------CTGGGGATTATAACAGCTGGGCCTGGAGCAGG---------------TGGACACACT s mm5.chr11 99518002 68 + 121648857 CTGGGT-------------AGCAACA--------------------GCTGATAACACAGCAGCTGGGG---CAAACAGCTGGGCACGCAACAGC---------------TGGACACACA s rn3.chr10 88802452 83 + 110733352 CTGGACACTCCACAGCTAGGGCGGCA---------------GGTAGTCTGACAGCACA----CTGGGCG--GCAGCAGCTGGACTGACAGCAGG---------------TGGTCTGGCA s canFam1.chr9 39424214 100 - 53642819 aggggc-------------ggcagcagctagagatgcagcaggaggggcggcaaca------gctggagccacagcagctggaactggagcaggaggggcggcagcagctagacacaca s fr1.chrUn 46211252 70 - 349519338 AGCAGT-------------AGCAGCA---------------GCAGCAGTAGTAGCA------GCAGCAGCAGCAGCAGCTACATCAGCAGCAGC---------------TACAGCAGCA s danRer1.chrUn 44299598 71 + 367113659 GAGGGTCT-----------GGCAGCT------------CTGGAGGGTCTGGCAGCT------CTGGAGGGTCTGGCAGCT----CTGGAGGGTC---------------TGGCAGCTCT a score=18792.0 s hg17.chr17_random 2488402 61 + 2618010 GCAGCTTGA---------------------------------------------GTGGCAGCAGCTAGAAATGCAGCAGCTGGGGCAG-------------CACAGGGACTGG-----CAGCAC s panTro1.chr19 42756994 61 - 82489036 GCAGCTGGA---------------------------------------------GCGGCAGCAGCTAGAAATGCAGCAGCTGGGGCGG-------------CACAGGGACTGG-----CAGCAC s mm5.chr11 99518070 64 + 121648857 GCAGCTGGG---------------------------------------------GTGACAACAGCTGGGATGGCAACAGCTGAGGCAG---------------CAGTAAATGGAAACCCAACAG s rn3.chr10 88802535 61 + 110733352 GCAGACTGG---------------------------------------------GCGGCAGCAGCTGGACACTCCACAGCTAGGGCGG-------------CAGGTGGTCTGA-----CAGCAC s canFam1.chr9 39424314 124 - 53642819 gcagctggggcggcagcagGTGGTCCTGCAGCAGGTGGTCTGgcagcaggtggggcggcagcagctagagatgcagcagctgggcctgcagcagctggagccacagccactggaaccacagcag s fr1.chrUn 46211691 61 - 349519338 GCAGCTACA---------------------------------------------GCAGCAGCAGCTACAGCAGCAGCAGCAGTAGTAG-------------CAGCTACAGCAG-----CAGCAG s danRer1.chrUn 44299669 53 + 367113659 --GGAGGGT---------------------------------------------CTGGCAGCTCTGGAGGGTCTGGCAGCTCTGGAGG-------------------GTCTGG-----CAGCTC a score=-2916.0 s hg17.chr17_random 2488463 6 + 2618010 -GGGGGC s panTro1.chr19 42757055 6 - 82489036 -TGGGGC s mm5.chr11 99518134 6 + 121648857 -CTGGAT s canFam1.chr9 39424439 5 - 53642819 -agggg- s fr1.chrUn 46211753 5 - 349519338 -AGCAG- s danRer1.chrUn 44299722 6 + 367113659 TGGAGG- a score=53878.0 s hg17.chr17_random 2488469 69 + 2618010 ---CTGCAACAGCTGGACACAGAGCAGCTGGGATGGTAGCAGATGGTTCTGCAGTAGGTGGTCT-----GGCAGCAA s panTro1.chr19 42757061 69 - 82489036 ---CTGCAACAGCTGGACACAGAGCAGCTGGGATGGTAGCAGATGGTTCTGCAGTAGGTGGTCT-----GGCAGCAA s mm5.chr11 99518140 71 + 121648857 ---CTGCAGCCACTGGACACA---CAGCTAAACTGGCAGCAAGTGGTCCTGTAGCAGGTGGTCTGGTAAGGCAGCAG s rn3.chr10 88802686 69 + 110733352 ---CTGCAGCAGCTGGACACACAGCAGCTGGGGCGGCAGCAGGTGGTCCTGCAGCAGGTAGTCT-----GGCAGCAG s canFam1.chr9 39424444 69 - 53642819 ---cggcagcagctggacacacagcagcttgggcggcagcagGTGGTCCTGCAGCAGGTGGTCT-----GGCAGCAG s fr1.chrUn 46211758 57 - 349519338 ---CTACAGCAGCAG------CAGCAGCTACAGCAGTAGCAG------CAGCAGCAGCTGCAGC-----AGCAGCAG s danRer1.chrUn 44299728 66 + 367113659 GTCTGGCAGCTCTGGAGGGTCTGGCAGCTCTGGAGG-GTCTGGCAGCTCTGGAG-----GGTCT-----GGCAGCAG a score=16961.0 s hg17.chr17_random 2488538 28 + 2618010 CTGC---AGCAGCAGCAGGTCTGGCAGAGGC s panTro1.chr19 42757130 28 - 82489036 CTGG---GGCAGCAGCAGGTCTGGCAGAGGC s mm5.chr11 99518211 31 + 121648857 GTGGCCTGGCAGCTGCTCTCCTGGCAGCACC s rn3.chr10 88802755 31 + 110733352 CTTGGCTGGCAACAGCTCTCCTGGCAGGGAC s canFam1.chr9 39444999 28 - 53642819 CTGA---GGCAGCAGCAATTCTATCAGAGGC s fr1.chrUn 46211815 28 - 349519338 CTAC---AGCAGCAGCAGCAGTAGCAGCTAC s danRer1.chrUn 44299794 28 + 367113659 CTCT---GGCAGTAACAGCTCTGGTGGTGGC a score=24931.0 s hg17.chr17_random 2488566 45 + 2618010 CTTGGCCACAGCTCTATTCAGAGCAG--ACAG----AGCTACAACAGAAGC s panTro1.chr19 42757158 45 - 82489036 CTTGGCCACAGCTCTATTCAGAGCAG--ACAG----AGCTACAACAGAAGC s mm5.chr11 99518242 45 + 121648857 TTTGGCCACAGCCCTGCTCAGAGCAA--TCAG----AGCCACCACAGAAGC s rn3.chr10 88802786 45 + 110733352 TTTGATCACAGCCCTGCTCAGAGCAG--ACAG----AACCACAACAGGAGT s canFam1.chr9 39445027 33 - 53642819 CATGG------------TCAGAGCAG--AAAG----AGCCACAAAAGGAGG s fr1.chrUn 46211843 51 - 349519338 AGCAGCAGCAGCAGTAGTAGCAGCAGCTACAGCAGTAGCTACAGCAGCAGC a score=8219.0 s hg17.chr17_random 2488611 11 + 2618010 TGACCATGGTG s panTro1.chr19 42757203 11 - 82489036 TGACCATGGTG s mm5.chr11 99518287 11 + 121648857 TGACTGTGATG s rn3.chr10 88802831 11 + 110733352 TGACCATGATG s canFam1.chr9 39445060 11 - 53642819 TGACCATAGTG a score=652.0 s hg17.chr17_random 2488622 5 + 2618010 TCAGA- s panTro1.chr19 42757214 5 - 82489036 TCAGA- s rn3.chr10 88802842 5 + 110733352 TCAAA- s canFam1.chr9 39445071 5 - 53642819 -CAAAA a score=2554.0 s hg17.chr17_random 2488627 29 + 2618010 TG-AGAATC----GCAGATGACGAGCAGAAGGAG s panTro1.chr19 42757219 29 - 82489036 TG-AGAATC----ACAGATGACGAGCAGAAGGAG s rn3.chr10 88802847 34 + 110733352 GGTAGAGTTCTGAGTAGATTTCCAGGAGAGTGAG a score=55781.0 s hg17.chr17_random 2488656 603 + 2618010 GCACTTCTTCCTGTACAATGTGTCTCCATGTGGTTCAAGGAAGTAGCCACACTCACCAAGCAACAAGATAAATGGTCTTTGACCCACACAAGATTCACCGGAAATACTGATATCCTTTCAAGTCACTAAGTCTTTGGTCTTTCCCGCCTTGTAAAAAAGCTTGGCTCTTTATGCCGTACTTCACAGAGCCCTACTCCTGATTCATCTTCTTGAGAATACAAAGTCGCAGTTATATTTGAATTTAGGCCACAGTCTTATGGATGGAATTGCACCCAGCAAGGAGTTGATGAGAAGGTCATGGCCTTGGACTCTTCTTGGCATC-TTCCTAGAACATCTCAGGCAGTTTTGTTTTTAATAAATATAGATTTCTAGGCAATGCTCTTGGATATGCTGTGTCACTTGATTATTAtcctgagtagctgggattacaggcacctgccaccatggccagctaatttttgtatctttagtagagccaggatttaaccatgttggccaggctggtgttgaactcctgacctcaaatgatcagcccacctcggcctcccaaagtgctgggattacaggcatgagccaccactcccATCCCAAAATAGAATTTCT s panTro1.chr19 42757248 604 - 82489036 GCACTTCTTCCTGTACAATGTGTCTCCATGTGGTTCAAGGAAGTAGCCACACTCATCAAGCAACAAGATAAATGGTCTTTGACCCACACAAGATTCACCGGAAATACTGATATCCTTTCAAGTCACTAAGTCTTTGGTCTTTCCCGCCTTGTAAAAAAGCTTGGCTCTTTATACCATACTTCACAGAGCCCTACTCCTGATTCATCTCCTTGAGAATACAAAGTCGCAGTTATATTTGAATTTAGGCCACAGTCTTATGGATGGAATTGCACCCAGCAAGGAGTTGATGAGAAGGTCATGGCCTTGGACTCTTCTTGGCATCTTTCCTAGAACATCTCAGGCAGTTTTGTTTTTAATAAACATAGATTTCTAGGCAATGCTCTTGGATATGCTGTGTCACTTGATTATTAtcctgagtagctgggattacaggcacctgccaccatggccagctaatttttgtatctttagtagagacaggatttcaccatgttggccaggctggtgttgaactcctgacctcaaatgatcagcccacctcggcctcccaaagtgctgggattacaggcatgagccaccactcccATCCCAAAATAGAATTTCT a score=1908.0 s hg17.chr17_random 2489259 18 + 2618010 AATGAAATAGACATAATC s panTro1.chr19 42757852 18 - 82489036 AATGAAATAGACATAATC s canFam1.chr9 14275628 15 + 53642819 AATGCAGTGAACATC--- a score=143526.0 s hg17.chr17_random 2489277 628 + 2618010 TAATTTGATCTTCTAGAAGTC-TTTTCCAAGCCTCACA-CAAAGATTATTAAAATAATTGATTCTCTACTTTGGTAGATTAGATTATTCCTTATTAATGTTTACTCTCCCCCCTCCTCCCACCCAACTCCAGAAGTAtc--------ctctcccaccctctgacttggactttgccatgtgagttgctttgaccaatg-------agaAGGCATGACCC---GAAGACTCAA-AATGTGA-----------GATTGTTCCCTTGGGCCTTTGTTCTCAGAG--GAGGA--TGGCCCCtaaaataccggacactccattaaa-atggaattccagacaaacaacaaataatttttaaatgtaagtat-acccatgcataatcagatataattgtaataaaattatttgttgtttttctgaaattgacatgtaactggggaacctgtatttttatttgctaaatatgacaactctCATTCAAAAGAAAGTCCCAAACCAACCTGTGGGCAGAAGCTAAGGCCAACCTT-AATCAAccaaaccccaactaacctacaaatatatgaccaataaataaatacttgttacaataagctatgagagtttgtggttgcttgctatgcagcaa---tagctgt--ctaattcaACCATGGTAGCAATGTGAAGCCAGCTT s panTro1.chr19 42757870 635 - 82489036 TAATTTGATCTTCTAGAAGTC-TTTTCCAAGCCTCACA-CAAAGATTATTAAAATAATTGATTCTCTACTTTGGTAGATTAGATTATTCCTTATTAATGTTTACTCTCCCCCCTCCTCCCACCCAACTCCAGAAGTAtc--------ctctcccaccctctgacttggactttgccatgtgagttgctttgaccaatgagatgtcagaaggcatgacCC---GAACACTCAA-AATGTGA-----------GATTGTTCCCTTGGGCCTTTGTTCTCAGAG--GAGGA--TGGCCCCtaaaataccggacactccattaaa-atggaattccagacaaacaacaaataatttttaaatgtaagtat-acccatgcataatcagatataattgtaataaaattatttgttgtttttctgaaattgacatgtaactggggaatctgtatttttatttgctaaatatgacaactctCATTCAAAAGAAAGTCCCAAACCAACCTGTGGGCAGAAGCTAAGGCCAGCCTT-AATCAACCAAACCCCAActaacctacaaatatatgaccaataaataaatacttattacaataagctatgagagtttgtggttgcttgctatgcagcaa---tagctgt--ctaattcaACCATGGTAGCAATGTGAAGCCAGCTT s mm5.chr11 22354702 543 - 121648857 TGATCTCACTCTCTAAAAGGCATTGTGTAAGCAGCCCAGTAGAAATTACTAAAATAGTTGATTCTTAACTTAAGTAGATT------TTTCTGCATTATCTCTACACT-CTCTCTTCTCCCATCCA---------------------------------------------------------------------AATA-------------------------AAGACTTAATAATGTGT-----------TGTGGGCTCCT-----CTCTCTAGCAGGAG--TAGGA-CTGTCACCTAAAACACAGGACAATTCATTAGATTTTTAACTTCAAATAAACAACAAATACTTTGAAAATGTAAATATGGGTAATCTACACTCAGATACAATTATTATACAGTTATTCATTGTTTATCCTATATTTGCATGTGTCTAGAAAATAGATAATTTTATTTTTGAAATACGACTCCCTTAATTCCTAAAGAAGTCCCACACTAACCTGTGACCAGAAGCCACGCCCAGGTTTAAATCAGTCA------AACTAAACTGCAGACAGGTAACCCAGAAATAAACACGTATTATTGTGCATGGTGAGAGTTTGCAGATGCTTATTATAGACCACATTTGAATGCAACTAACTCAATCACAGTCATAAT---AAACTAACTC s canFam1.chr9 14275643 651 + 53642819 TAATTTGACTTTTTAGAAGTCTTTGTCCAAGCTTCACAACAAAGATTCCTAAAATAATTGATGCATTGCTCTGGTAGATTAGATTATTCTTCATTAGTGGTTACTCT-CTTCCCCTTCCCACCC--CTCTAGAAGTATCCTCACCCActctcccaccctgtgactttgacttcaccatgtgacttgctttggccaatgggatgttagaggacatgatccattaaagacttga-aatatgtctgcaTGACTGCATTGCTGCCTCATG-CTATGCCATCAGAACCAAGGCTCtgtcaattaaaatacaggacacctcactaaa-ttttaatttcagataaataacaaataaaattgtgataaaagtatgacccttgcatattcaaac----ttatactaaagat-ttatttgtttatctgaaatccaattttaact-gggcacctgtatttttatttactaaatctggtaactctaATTCAGAAGTAAGTCCCAAACTAACCCACTACCAGAAGCCA-GACCAACCTT-AATCAGCCAAAACCCAAATGACCTGCAGACACATGACCAAGAAA-AAATATCTGTTATTGTATATTCTGAGAGTTTGTGGTTGCTTGTTATGCATTA----CAGCTGA--CTAAGTCAACCATGGCGGCAAAGAGAAACTAGCCT a score=39532.0 s hg17.chr17_random 2489905 285 + 2618010 AATACACCAATCAATACACAAGGATGAACAGATGGCTTTCTACAAAGAAAATAAAAATAGAACAGTGGCCAAGTATTTGTGACAGGGTTGGTTTTATGGTAAATTTTGATAAATTTTCTGGAGGGGATAGTTAGTTAAATTTTTAGCTTTATCAATATAATGAGGATTAATGGATAGTGCAAAGTGAGCCTATTCAAATTAATTCAAAGGAGAATCTCATT-TTCATAAGCCTATTTGTGAAAACACAGCTTT-CGATTTAGACATGCTTGGATTTGAATCTAGACT s panTro1.chr19 42758505 285 - 82489036 AATACACCAATCAATACACAAGGATGAACAGATGGCTTTCTACAAAGAAAATAAAAATAGAACAGTGGCCAAGTATTTGTGACAGGGTTGGTTTTATGGTAAATTTTGATAAATTTTCTGGAGGGGATAGTTAGTTAAATTTTTAGCTTTATCAATATAATGAGGGTTAATGGATAGTGCAAAGTGAGCCTATTCAAATTAATTCGAAGGAGAATCTCATT-TTCATAAGCGTATTTGTGAAAACACAGCTTT-CGATTTAGACATGCTTGGATTTGAATCTAGACT s mm5.chr11 22355245 278 - 121648857 AGTATGCCAGACATTGTGCAAAGATAGGAAGATAGTTTTCCACAAAGACAGTAAAAATTAAATGATGTTGAAGAATATGTGCCAGGTTAAATTT-----TGAATTTTAATAAGTTTT---GTGATCATAAATTAATAAATCTGGAGGCTAATAGATAAAACTGTGAAT-ATGGAGAGTGTAAAGCCAACTTATTAGCATTAAGTTGTAGAATGATTCCATTGTTTGTAATCATCTTAGTTTAAGCATAAATTTACCAGTGAGGCACAGCTGACTTTGTATCCAGACT a score=16758.0 s hg17.chr17_random 2490190 176 + 2618010 GTTATCTAAGAGCCTacagttcaatgctgttctggtcaggctatggcagaagctcaagctggaagagtgcttcacaaaggagcctcaggctcagcccgctgccctcccacagaggaatggcaggtgccagcccctttatactaggatgaaggccaaggtcccagaatcccaAGGGC s panTro1.chr19 42758790 176 - 82489036 GTTATCTAAGAGCCTacagttcaatgctgttctggtcaggctatggtagaagctcaagctggaagagtgcttcacaaaggagcctcaggctcagcccgctgccctcccacagaggaatggcaggtgccagcccctttatactaggatgaaggccaaggtcccagaatcccaAGGGC a score=77599.0 s hg17.chr17_random 2490366 618 + 2618010 CTTTGCCCCTATCTGATGGCTTCCGCTACGCCTTGACTTGTGCAGACACCTGC----ATGGGGCTACTGTAGGTGTATCCCAGCAAGTATGTTACCCAGAAAACCACCATAAAAAGACTGG---AGTTATATGTAGCCTGTGGCGTCCCCACTGATATCAACAGTGCCCAGGGCTCTCACTTTACCATATACAAAGTGCAGGAATCGGTGGAGGCCCTGGATATCCATTGGCATTTCTACCTGCCATACAACCCTATAGCAGCGGGGCTGATTGAATGGATGAAACAACCATTGAAGAAACAACTCTGGCAGGAGACGCCCTCTCTGGCTCTGTGGACACACTGCTTACCAGCACCCATCTGCGCCctgaatgaaactatccaaattagatgtatcactttgcaaaatcacatgccctggacgcttagtgtggatcttctgcattaattaaaactgaatgttgtgtatatatatccctgattactctcacaatgtaactcaggccgtgcaggcccaagatatccctgaattaacaggtgtgctctcaTCTCCCCAGTGCACACACTCTTCTGGCTCAAGGACCTGATACCACCATCACGATCCAGGTTGA------CAGTGTAAGGGATGG s panTro1.chr19 42758966 624 - 82489036 CTTTGCCCCTATCTGATGGCTTCCGCTACACCTTGACTTGTGCAGACACCTGC----ATGGGGCTACTGTAGGTGTATCCCAGCAAGTATGTTACCCAGAAAACCACCATAAAAAGACTGG---AGTTATATGTGGCCTGTGGCATCCCCACTGATATCAACAGTGCCCAGGGCTCTCACTTTACCATATACAAAGTGCAGGAATCGGTGGAGGCCCTGGATATCCATTGGCATTTCTACCTGCCATACAACCCTATAGCAGCGGGGCTGATTGAATGGATGAAACAACCATTGAAGAAACAACTCTGGCAGGAGACGCCCTCTCTGGCTCTGTGGACACACTGCTTACCAGCACCCATCTGCGCCCTGAATGAAACTATCCAAATTAGATGTATCACTTTGCAAAATCACATGCCCTGGATGCTTAGTGTGGATCTTCTGCATTAATTAAAactgaatgttgcgtatatatatccctgattactctcacaatgtaactcaggccgtgcaggcccaagATATCCCTGAATTAACAGGTGTGCTCTCATCTCCCCAGTGCACACACTCTTCTGGCTCAAGGACCTGATACCACCATCACGATCCAGGTTGACCATCCCAGTGTAAGGGATGG s canFam1.chr15 52324110 456 + 67237905 CCCTGTCCCTCTCCATTGGCTTCTGTTATACTTTGATATGTACTGACACTTATTCAGACAGGACTCCTGCAAGCCTACCCCAGTAAACATGCTAACTACAAAGCTACCATCCTCAGTCTGGAATAGCTGTGTGCTGCTTATGGGGT-ACCACCGACATTGGCAGTGACCAAGGCTCCCACTGGACAGGACATGAAGCACAAGAGTGGGCCAGCACTCAAAGCATCCATTGGCATTTCCATCTACTGTATAATCCCACTGCAGCTGGGTTGATAGAATGCATGAAACGACTGTT---GAAACAATTGGAACAAGGAATTCACTCACTGGCCTATTGGACAAGCTGCCTA-------------------TTAATAAGAC---------------------------------------------------------------------ATTAAAA-----------------------------------------------------------------------------GAACAGGTACATTCTCATCAGTCCAGTGCCTATACTCTACTCACTCAAGGACCTGCTGTCCCCCTTAGAATACACATAGA------GAGCATGCAGGAAGG a score=3728.0 s hg17.chr17_random 2490984 43 + 2618010 TACCCCCCTCCTTTGCCTCAACCTGGGACTCAACCTGGGGCTA s panTro1.chr19 42759590 43 - 82489036 TCCCCCACTCCTTTGCCTCAACCTGGGACTCAACCTGGGGCTA a score=45758.0 s hg17.chr17_random 2491027 364 + 2618010 TGCCCTTGCCATAGGACCTACCCACTGGAGAGCACATCATTACATGGGCCCGGAAATCACAAACCAGCCCCAGTTGGTACAGTTTTTTCACTCCATGGGGCAAGGGCGTAGAAAATGATATACAGATCACACCTATTTTACATCCTATTCCTCCTTGTACTTCTAAAATAATCAATCCTAGTCCCCACTTGTGCAAGGGAG---TGATCATCCTGTCATTATGGGACATTACAATATCCACACTGTCTTACT----GTGGCTGCAACGTGTTGCAGAAGTGGGCAATCCATGTGGTATTGCAAACCAGG--------CACAGGTTGCTGCTGGGGGTGGTGATCTCTCAGAACGACACAACTTCCTG--TCTTGTTAGATG s panTro1.chr19 42759633 364 - 82489036 TGCCCTTGCCATAGGACCTACCCACTGGAGAGCACATCATTACATGGGCCCGGAAATCACAAACCAGCCCCAGTTGGTACAGTTTTTTCGCTCCATGGGGCAAGGGCATAGAAAATGATATACAGATCACACCTATTTTACATCCTATTCCTCCTTGTACTTCTAAAATAATCAATCCTAGTCCCCACTTGTGCAAGGGGG---TGATCATCCTGTCATTATGGGACATTACAATATCCACACTGTCTTACT----GTGGCTGCAACATGTTGCAGAAGTGGGCAATCCATGTGGTATTGCAAACCAGG--------CACAGGTTGCTGCTGGGGGTGGTGATCTCTCAGAACGACACAACTTCCTG--TCTTGTTAGATG s canFam1.chr15 52324681 365 + 67237905 TGTCCTTGCCACAAGATCCATCTAACAGGGAAAATATAATTAAATGGCTCTGGAAATGACAAAGAAGTCCATGACTGTTTGGGTTTTTGGCCTGATGGGGAATCGGAATAGAACAGGAC-TAATCATCACCACATTTCTTCACCCCACTCCATTGAAGACAATGAGGATATACAACCCCAGGTCTCATTAAAAAAAAAAGGACATAGTCATC------TTATGGGGCATTGTTATACTCCCACTACCCTTTTCAGCTTTGCCTCACTGTGTAAAGAAGGGAGGCCAATGATTGGTTACTATAAACCTGGAGCTCAACCACAGTC---------AGGTGGTGTGATCCCAGAATAACATCACCTCCTGCATTTTATTAGACA a score=17970.0 s hg17.chr17_random 2491391 228 + 2618010 GCCTGACTTGCCCtttcttcttttttttttttttttttggagatggagttttgctcttgttgcccaggctagagtgcagtggcatgatctcagctcactgcaatctctgcctcctgggttcaagagattctcctgcctcagcct-cccaagtagctgggattacaggcatgcaccaccacgcctgcctgatttttttgtatttttagtagagacagggtttcaccatgt s panTro1.chr19 42759997 224 - 82489036 GCCTGACTTGCCCtttcttc--ttttttttttttttttggagatggagttttgctcttgttgcccaggctagagtgcagtggcatgatctcggctcactgcaatcttcgcctcctgggttcaagtgattctcctgcctcagcatggccaagtggctgggattacaggcatgcaccaccacgcctgcgtgatttttttgtattttt--tagagacgggg-ttcaccatgt a score=6742.0 s hg17.chr17_random 2491620 94 + 2618010 ggtcagctggtctcgaactccagacctcaggtgttccacacgccttggcctccaaaagtgttgggattacagacgtgagccactgtgcccggcc s panTro1.chr19 42760354 90 - 82489036 ggtcagctg-tctcga-ctccagacctcag-tgttccacacgcctgggc-tccaaaagtgttgggattacagacgtgagccactgtgcccggcC a score=92712.0 s hg17.chr17_random 2491714 805 + 2618010 AACTTGCCCATTCTTCTACCCACTAGGTATCTCACCTGTCACCCATAGGTGGTGT-------ACCTCTTCACCAACTGGGTGCAAATGGCGACCTTTCCCCAAAACAAAACAGACTGTTGCATCTGCAGGGAGCTGCCCTTCTCCTCCAGCATCA---GCCTGCCATGGTGCATCCAAGCAGCTAACCTCAGTATCTGGAGCCATTTCTATACTTGGTATAATGACCCTCACC-CATTTCCCTTTAGCAATAACCACACTTCATGTG-ATAAGTTTCCCACCATCAGAGATGAGACAA--CATATTTTCCACCTAGTATAGGAGCAGGTTAATGTCACCCCCACTGTGGGGTATTCTGTAGATGATGGGCCAGGGTGGACAACAGCAGTATAGATACAGCTTGTGGGCTGTGCACCCACATGTATTAAAAGGCATGATAATAGCATGCCACAAGCTAAAACCAGTAGTATGGGATGGCTACCCCCACAGTGTAATGTAATCTATTTCTTCAGGTAATAGACATGGAATATGACAGCAATGAAACCAATCTCTTCAGGTAACCAGTGATACTTGACTGCGACGACAGA--GTGACTCTCCACCtgggggcctaccacaccccttaggatggctgtgggcatgcggcatccacagttggccttacttaccctataactggactggtagatgcacct-ggggacatcctcatttgctgggatacatcgtgcccagtttagacaccattcttactaactgggaaattgtaaaagccaggcactg--ctggaagcatgcatccctgtggttttacccgttggccacttt s panTro1.chr19 42760444 805 - 82489036 AACTTGCCCATTCTTCTACCCACTAGGTATCTCACCTGTCGCCCATAGGTGGTGT-------ACCTCTTCACCAACTGGGTGCAAATGGCAACCTTTCCCCAAAACAAAACAGACTGTTGCATCTGCAGGGAGCTGCCCTTCTCCTCCAGCATCA---GCCTGCCATGGTGCATCCAAGCAGCTAACCTCAGTATCTGGAGCCATTTCTATACTTGGTAAAATGACCCTCACC-CATTTCCCTTTAGCAATAACCACACTTCATGTG-ATAAGTTTCCCACCATCAGAGATGAGACAA--CATATTTTCCACCTAGTATAGGAGCAGGTTAATGTCACCCCTACTGTGGGGTATTCTGTAGATGATGGGCCAGGGTGGACAACAGCAGTATAGATACAGCTTGTGGGCTGTGCACCCACATGTATTAAAAGGCATGATAATAGCATGCCACAAGCTAAAACCAGTAATATGTGATGGCTACCCCCACAGTGTAATGTAATCTATTTCTTCAGGTAATAGACATGGAATATGACAGCAATGAAACCAATCTCTTCAGGTAACCAGTGATACTTGACTGCGACGACAGA--GTGACTCTCCACGtgggggcctaccacaccccttaggatggctgtgggcatgcggcatccacagttggccttacttaccctatcattggactggtagatgcacct-ggggacatcctcatttgctgggatacatcgtgcccagtttagacaccattcttactaattgggaaattgtaaaagccaggcactg--ctggaagcatgcatcccagtggttttaccAGTTGGCCACTTT s canFam1.chr15 52325051 748 + 67237905 GACTTGTCTTTTGTGGTGCCTACCAAACAGCTTACAT-TTGCCTTTAGATTCTGTATGGGACACCCATTCCCCCATTGGGTCCTGACCATGGCTTCTATGCAGAGTAAGACCAGCTGTTGGATGTGCAGTGAA-----TTTTCCCATCAGTGCTACAGGCCTCCTCTGGCAAATCTACATTGCCAACCTTGGCACTTGGAGATGCTTCTACACTTGGTATAAC--CCCTCCTTGCTCTTACCTGGACCGATGCATGTTCCCCAGGTATCCAGGCTCCCCCTCCCCAAAGATGTAAAGAGGAAAATTTTCCGATTGGTAGAAGAGCAGGTAAATAAAGACTAC-CAATAGAATATGCCATTTAGGATGGCCTAGGATACTTAACTGCAACCCAGGTACAAATTATGATAGTGGCCTCATCATGTGTAGAGTAGCAAAACAGGGCCAT---AAATGCTACAGGTCATAATGTGGGGTGG--------------------------------------ATAGCCAT--------ACAACAATGCAATCACACTATATTCATTACTGCTGATATCTGGCTAAGGAGACAAAAGGTGCCTTCCCTTCT---------------CTGTGGGGATGGTTATGGGCATGTGGTACCCATGGCTAGCTTTACTTATTTCATAACTGAGCTAACA-CTGCATCTGGGGGGCACTCCTATGTACCAGACTATCTACTCACCTACTTAGAGGAGAAATCTATCAGTTGGGATGTGGTCAGGCCCTAACACAGAACTAAAAGAA--CATCTTGGTGTTTCTGTCCCCTCTCTATTTT a score=104122.0 s hg17.chr17_random 2492519 1187 + 2618010 tgccATGTCCCCCCCCCCACTCCCCCCACCACTCACCACCCAAGTGGTGACAATAGACATACAGCTgcaagttgaggccctggcttaacatagggctgcagtctttaatgatatctgccatgatattactcttctcactgaagaaactgcccaaattaggtgtgttactttgcaaaattgcatggcccaggacatcttaaccgcttatcagggcagaacctgtgcattaattaaaactgaattttgtgtatatatccctgattactctcacaatgtaacaCAGGCCATGTGGGCCCTAGATACCCAGATTTCTGCTATAGAATCTCTATCTTATGACCCTGTAACCACATggtttaatcaactcctgagtgcttggaaaaactttctatacagtacaattgttgttacattcattattcttttttgttgtagtagtttatgttgctgctgaaacatctggttgcaatgctcctctgcatatcctagccccagggaaatctcagaagaatggtgtgattagaatgtaagggctattcaagggtatgctgaggtggagggtatggcagacacatctggcagcaataacttaacttaagcataccctgagaatgatcctacaatcaaagaagaatgtatgcttggagttctgagctaaggatctgggagtggccaacttggagatccactccttatctatgaaggacatttgaatccccacctcatccattagaacacaggtcatactggggattgaggccctttgttttggattaaatggaggttgttaggtggagggttctaatgaaaatactgtgtgaactgcatgctttttacaaataatagcagttctcctgtccagataccaccactggaccacccttgtatgtaagttccactaataaaccctgcatcatgttagctttctccaggtcccttctctagcctctcagacacattgtcatacttagtggagtcaatgggggtccaggatgacaATGTGTCATCTGGGCAAAACATTTCCCTAATTCTCTTCCAG-TACCACTTCTAACCTTGCTGCTGAAAG---GAAAGTT---CATT----------------------------ACTTAt---------------------------------------ttttttaaatctgtgtttaatatgtataaatgtaagaggttcaaatgcagcattgttacatgg-atatattgcatagtggcatgaagtctggg-cttctactTTAATAT s panTro1.chr19 42761249 1263 - 82489036 TGCCATGTCCCCCTCCCCCCGCCCTCCACCACTCACCACCCAAGTGGTGACAATAGACATACAGCTgcaagttgaggccctggcttaacatagggctgcagtctttaatgatatctgccatgatattactcttctcactgaagaaactgcccaaattaggtgtgtaactttgcaaaattgcatggcccaggacatcttaaccgcttatcagggcagaacctgtgcattaattaaaactgaattttgtgtatatatccctgattactctcacaatgtAGCACAGGCCATGTGGGCCCTAGATACCCAGATTTCTGCTATAGAATCTCTATCATATGACCCTGTAACCACATggtttaatcaactcctgagtgcttggaaaaactttctatacagtacaattgctgttacattcattgttcttttttgttgtagtagtttatgttgctgctgaaacatctggttgcaatgctcctctgcatatcctagccccagggaaatctcagaagaatggtgtgattagaatgtaagggctattcaagggtatgctgaggtggagggtatggcagacacatctggcagcaataacttaacttaagcataccctgagaatgatcctacaatcaaagaagaatgtatgcttggagttctgagctaaggatctgggagtggccaacctggagatccactccttatctatgaaggacatttgaatccccacctcatccattagaacacaggtcatactggggattgaggccctttgttttggattaaatggaggttgttaggtggagggttctaatgaaaatactatgtgaactgcatgctttttacaaatagtagcagttctcctgtccagataccaccactggaccacccttgtatgtaagttccactaataaaccctgcatcatgttagctttctccaggtcccttctctagcctctcagacacattgtcatccttattggagtcaatgggcgtccaggatgacaATGTGTCATCTGGGCAAAACATTTCCCTAATTCTCTTCCAGGTACCACTTCTAACCTTGCTGCTGACAATGTGAAAGTTGGGCATTCACTTTCCTTTTTTTAAAACTATGTTTAACTTGTATAAATGTAAGAGGTTCAAATGCAGCATTGTTAACATAGTTTTTTAAAACTATGtttaatatgtataaatgtaagaggttcaaatgcagcattgttacatgggatatattgcatagtggcatgaagtctggggcttctaCTTTAATAT a score=4617.0 s hg17.chr17_random 2493706 19 + 2618010 ATGTTTTCTTTCCTGTCTA s panTro1.chr19 42762512 19 - 82489036 ATGTTTTCTTTCCTGTCTA s canFam1.chr9 14277017 19 + 53642819 ATGTTCTCTTTCCTGCCTG a score=408787.0 s hg17.chr17_random 2493725 898 + 2618010 AAGACCATGGTTTACTGAATCCAATGAGCATAAAACTCATAGTAGGGGCTACTTACTGcagactgaggagacctggatctcagacctcatatggtgacctcattgtgtgaccttggtacactctcaggacctcagccgt-agagtgagggcata----ggcctacatattctccgcaatcccttccCGGACTCTACAGATGCAACGACTAATTCCAAACAAATTACAAATAT--AATAATTGCAATGGATCCTTGAAGAGGGTTTTACAATCAAGGTAGAAGTTGAGTTTGGATTGGAAGGATGAGGAGGGCATTCCAGGTGAATGATGACACATCAAAACCAAGGCAGGAAAGCCCAGGTCCTAGTCAGGGGAGAGTGACCACACCA--GTGGCCAGGGATCTGCAT-TTCGTGTGGTCCCTGCTCATATGAAAAACCACAAGCCTATCTTTAAGTGAGTCATGGAAGGAGCTATCTGTGAAGCAGATGACTACTGGTCTGCACTAGGATGATGCAATTAACCTGCTACCATCATGCCCATGTGCATTAATAAGGCAAGTCACTGCTTGGGTGCCGGTGATGGGAGCCTTTGAAGACAAGGAATAACATGCTAATTTTAGCGCCAAAGGGCAGAGCGATTAGACA-----CTAATTTAGAAAACACATTCTTTT-CTCTCTTATGGGTTAGGAATATTTCAAAGGAAAATTAATCAGAAGTGAATCCAATGTCTAAATTTAGTGAGGATAAACAATACAAGAAAATGAGCGAATATTTGTGGTGTATGTACATGAATATGTATGAGGTGAAG----AGTGACCAAAATACCATTAG-TCAATGCTAAATCTTCACTTAATTGGCCAGAAGATGCACAAGAAAATGATCATATGTTGA---AGGGTCATCAGCTCCCAGCCA s panTro1.chr19 42762531 898 - 82489036 AAGACCACGGTTTACTGAATCCAATGAGCATAAAACTCATAGTagaggctacttactgcagactgaggagacctggatgtcagacctcatatggtgacctcattgtgtgaccttggtacactctcaggacctcagctgt-agagtgagggcata----ggcctacatattctccgcaatcccctccCAGACTCTACAGATGCAACGACTAATTCCAAACAAATTACAAATAT--AATAATTGCAATGGATCCTTGAAGAGGGTTTTACAATCAAGGTAGAAGTTGAGTTTGGATTGGAAGGATGAGGAGGGCATTCCAGGTGAATGATGACACATCAAAACCAAGGCAGGAAAGCCCAGGTCCTAGTCAGGGGAGAGTGACCACACCA--GTGGCCAGGGATCCGCAT-TTCGTGTGGTCCCTGCTCACATGAAAAACCACAAGCCTATCTTTAAGTGAGTCACGGAAGGAGCTATCTGTGAAGCAGATGACTACTGGTCTGCACTAGGATGATGCAATTAACCTGCTACCATCATGCCCATGTGCATTAATAAGGCAAGTCACTGCTTGGGTGCCGGTGATGGGAGCCTTTGAAGACAAGGAATAACATGCTAATTTTAGCGCCAAAGGGCAGAGCGATTAGACA-----CTAATTTAGAAAACACATTCTTTT-CTCTCTTATGGGTTAGGAATATTTCAAAGGAAAATTAATCAGAAGTGAATCCAATGTCTAAATTTAGTGAGGTTAAACAATACAAGAAAATGAGCGAATATTTGTGGTGTATGTACATGAATATGTATGAGGAGAAG----AGTGACCAAAATACCATTAG-TCAATGCTAAATCTTCACTTAATTGGCCAGAAGATGCACAAGAAAATGATCATACGTTGA---AGGGTCATCAGCTCCCAGCCA s mm5.chr11 22356389 878 - 121648857 AAAATGATGGTTTACAGAG--CGCTAAGCATAGACCTTAGGGCAGATACAATTTACTGATAAGTAAGGGGACTCAGAACTCAGATCTCACACTGCACCCTTGCTGTGTGACCGCAGTAAACCCT-AAAACTTCAGCCGCAAGAGGGAAGGGATATGTGGGCCCATAGACTCTCCACAATCCTTTCCCAGAGTCTACTGATGCAGTGACTAATCCTAAATAAATCCCAAAGATAAAAAAATCTTGAGGGATCTCGGAAGCAGGTTTTATGATCAACGTGGAAGTTGAGTTCAGGTTCTGAGGACAAGAAGGGCATTCCAGGTCAATATGAAAACA--ACAGCCAGGACTGGAAAGCCCTGATCCTCAGCCAGAGAGAGTGATCAAGCCA--GTGTGACAGGCTATAAATGCCCGTGTGGTCCTTCATCAGATGTGAAACCACAAACCTG-CCAGAAATGCATCCTG---GGAGTTCTCTGGGAAGCAGATG-CGGATGGTCAGGCTTATAGTGGTGGTATTAATCTACTGCTGTCATGTCCATGTGTACTAACAAGGTAAGTCACTGCTTGGGTGGCAACCTGGGGAGGCTTTGAAGACAAA-------ATGATGACGTCAGAGACAAGGAG-AGAGTGGTTAGATCTTAT-CTGGTTTGGAAAACAAATTCTTTTCCTCTTTGATGACTTAGAAATATTCC------AAACTCATCGTAATTCAATCCCGTGTTTAGAGTCAGTAAGAATAAACCACAAAAGAAAATAAAGGGATATTTGTGATGTGTATGCATG-ATATGTAGGGAGTG--------GGGACAAAAATACCATTAG-TCAATGCTAACTCTTCTCTTAATTAGCCAGAGCATTTACAAG--AGTGATCATGTGCCTG---GGGGTCATCAGCACTGTCC-- s rn3.chr10 22141951 872 - 110733352 AAAATCATGGTTTACAGAG---------CATAGGCCTTAGGGAAGATACAGTTTACTGATAAGTAAGGGGACTCAGGACTCAGACCTCACACTGCGACCTTGCTGTGTGACCTCCATAAACCCT-AAAACTTCAGCCACAGGAGGGAAGGGATG----GGCCCAGAGACTCTCCACAATCCTTTCCCAGAGTCAACAGATGCTGTGACTAATCCTAAATAAATTCCGAAGAT--AAAAATCTCGAGGAATCCCTGAAGCAGGTTTTAGGATCAAGGTGGAAGTTGAGTTCAGGTTCCGAGGACAAGAAGGGCATTCCAGGTCAATAAGAAAACA--AGAGCCAGGACTGGAAAGCCCTGATACTCAGCAGGAGAGAGTGATCGAGCCA--GTGGGACAGCCTACAAATGCCCATGTGGTCCTTCATCACGTGGGAAACCACACTCCTG-CCAGAGATGCATCCTG---AGAGTTCTCTGGGAAGCAGATGACGA-TGGTCTGGCTTACAGGGGTGCCATTAATCTGCTGCTGTCACACCCATGTGTACTAATGAAGTAAGTCACTGCTTGGGTGGCAAGCCAGAGAGCCTTTGAAGGCAAA-------ATGATGACATCAGAGTTGAGGAG-AGAGTGGTTAGATCATAT-CTGGTTTAGAAAACAAATTCGTTC-CTCCTTGATGACTTAGAAATATTTC------AAACTCGTCATAATTGAATCCAGTGTTTAGATTCAGTAAGAATAAACCACAAAAGAAAATAAAGGGATATTTGTGATGTGTATGCATG-ATACGTAGAGGGGGGAGGGGTAGAGACAAAATTTCCATTAG-TCAATGCTAACTCTTCTCTTAATTAGCCAGAGGATTTACAAG--AATGATCATGTGCCTA---GGGGTCATCAGCACTGTCC-- s canFam1.chr9 14277036 860 + 53642819 AAGAGTATGGTCTACTGAACCTGATAAACATAAAGCTCATAGTAGAGGCTGCTTACTAAGGAGTGAGGAGACCTAGA--------------------CCCCTTTGTGTAACTGTGGTGAACCCACATGACGTCTCctgt-aagatgaggggata----agcctatatattctctatagtcctttccTAAAATCTACACATGTGAT-ATTAATCCTGAATAAATTACAAAGAT--AAAAATTGCAACAGATCCTTGATGAAAATTTTACAGTCTAGGTAGAGGTTGAGTTTGGTTTGGAAGGAAGAGGAGGGCATTCCAGATGAATGGGGAGACA--ACAATCAGG----------------CCCCACTGGGGAAAAGTGACTAAACCAAGGTGGCAGGAGTCTAGGAT-ATCATGTGGTCCCGCCTCATCTG-AAAACCACAAATCTGCCTCTTAGTGAGTCGTGGAAGGAGACATCTGGGAAGCAGAAGTCTACTGGCCTGCACGAGAGTGTTGCTATTAACCTATTACTATTAGGGGCATGGGTGTAAATAAGGCAAGTCACTGTTTGGGTGGTAATTATGTGAGTCTTTGAAGTCCAGGAATAAAATGCTGACTTCAAAGCCAAAGGTCAGAGTGATTAGATACTATCCTAGTTTAG-AAACACATTCTTTT-CTCTTGTATGAGTTAGGAATATTTC-AATAAAAATTCATCAGAATTGAATCCAATGTGTAGATTTGGTTAGAATAAACAATAT-AGAAGACAAAGGAATGTTTGTGGT-TGTATGCATGGATGTGTACAAGGTAAAG----AGTTA-AAAAATATCATTTGCTCAATGCTAACTCCTCACTTAATTGGATAGAAGATTAAGA----AATGATCATGTGTCCAGAGGGGGTCATCAGCACCTGGGCA a score=50310.0 s hg17.chr17_random 2494623 101 + 2618010 GGGTATATAAAGGGCCCAGAGGGGGAGGAGGACATTCACACCTGAGAACATCCAGCTCCTCTCAATAGCCCAA-CCCACACCAGCCTCAGACACCACCATGA s panTro1.chr19 42774067 101 - 82489036 CGGTATATAAAGGGCCCAGAGGGGGAGGAGGACATTCACACCTGAGAACACCCAGCTCCTCTCAACAGCCCAA-CCCACACCAGCCTCAGACACCACCATGA s mm5.chr11 22357267 99 - 121648857 AGGTATATAAAGGGACCCAATCCAGAGGA-GACA-TCACACCTGAGAACTCCCAACCTCTCCTCACTTCTCAGCCCCACTCCAGCC-CAGACACCACCATGA s rn3.chr10 22142823 99 - 110733352 AGGTATATAAAGGGACCCGACCCAGAGGA-GACA-TCACACCTGAGAACCCCCAACCACTCTTCACCTCTCAGCCTCACTCCAGCC-CAGACACCACCATGA s canFam1.chr9 14277896 101 + 53642819 GGGTATATAAAGGGGCCAAAGCAGGACAAAGACATTCACACCTGACAACACCCAAATCCTCTCACCAGTCCAG-ACCTAAACAGCCCCACACATCACCATGT a score=230629.0 s hg17.chr17_random 2494724 310 + 2618010 CCGGCTCCTGCTGCGGCTCCACCTTGTCCTCCCTGAGCTACGGGGGAGG------------------------------------------CTGCTGCCA----GC--CCTGCTGCTGCC---------------GCGACCCCTGCTGCTGCCGCCCCGTGACCTGCCAGACCACCGTGTGCCGC----------CCCGTGACCTGCGTGC--CCCGCTGCACGCGCCCCATCTGCGAGCCCTGCCGCCGCCCGGTGTGCTGCGACCCCTGCTCCCTGCAGGAAGGCTGCTGCCGCCCCATCACCTGCTGCCCC-TCGTCGTGCACGGCTGTGGTGTGCAGGCCCTGCTGCTGGGCCACCACCTGCTGCCA-------GCCTGTGTCTG-TGCA s panTro1.chr19 42774168 310 - 82489036 CCGGCTCCTGCTGCGGCTCCACCTTCTCCTCCCTGAGCTATGGGGGAGG------------------------------------------CTGCTGCCA----GC--CCTGCTGCTGCC---------------GCGACCCCTGCTGCTGCCGCCCCGTGACCTGCCAGACCACCGTGTGCCGC----------CCCGTGACCTGCGTGC--CCCGCTGCACGCGCCCCATCTGCGAGCCCTGCCGCCGCCCGGTGTGCTGCGACCCCTGCTCCCTGCAGGAAGGCTGCTGCCGCCCCATCACCTGCTGCCCC-TCGTCGTGCACGGCTGTGGTGTGCAGGCCCTGCTGCTGGGCCACCACCTGCTGCCA-------GCCTGTGTCTG-TGCA s mm5.chr11 22357366 322 - 121648857 CAGGCTCCTGCTGTGGAT---CCTTCTCCTCCCAGAGCTGTGGAGGAGG------------------------------------------CTGCTGCCA----GC--CCTGCTGCTGCCAGCCCTGCTGCTGCAGGGACCCCTGCTGCTGCCGCCCAGTGTCCTGCCAGACCACAGTGTGTCGC----------CCTGTGACCTGTGTGC--CCCACTGCACCAGGCCCATCTGTGAGCCCTGCCGCCGCCCCATCTGCTGTGACCCCTGCAGCCTGCAGCAGGGCTGCTGTCGCCCCATCACCTGCTGCCCC-ACCTCTTGCACAGCTGTGGTCTGCAGGCCTTGCTGCTGGGCCTCCACCTGCTGCCA-------GCCCATCTCAG-TGCA s rn3.chr10 22142922 304 - 110733352 CCGGCTCCTGCTGTGGAT---CCTTCTCCTCCCAGAGCTGT---GGAGG------------------------------------------TTGCTGCCA----GC--CCTGCTGCTGCA---------------GGGACCCCTGCTGCTGCCGCCCAGTGTCCTGCCAGACCACTGTGTGTCGC----------CCTGTGACCTGTGTGC--CCCACTACACTAGGCCCATCTGTGAGCCCTGCCGCCGCCCCATCTGCTGTGACCCCTGCAGCCTGCAGCAGGGCTGCTGTCGCCCCATCACCTGCTGCCCC-AGCTCTTGCACAGCTGTGGTCTGCAGACCCTGCTGCTGGGCCTCCACCTGCTGCCA-------GCCCATCTCAG-TGCA s canFam1.chr9 14277997 353 + 53642819 CTGGCTCCTGTTGTGGTTCCATCTGCTCCTCCCAGGGCTGTGGCACAGAATGctgccagccctcctgctgccagccctcctgccagccctcctgcTGCCA----GC--CCTGCTGCTGCC---------------GCGACCCCTGCTGCTGCCGCCCCGTGAGCTGCCAGACCACTGTGTGCCGC----------CCCGTGACCTGCACCT--GCCGCTGCACGCGCCCCATCTGTGAGCCCTGCCGCCGCCCTGTGTGCTGTGACCCCTGCTCCCTGCAGGAGGGCTGCTGCCGCCCCATCAGCTGCTGCCCCGACGTCCTGCACTGCCGTGGTCTGCCGCCCCTGCTGCTGGGCCTCCACCTGCTGCCA-------GCCCATCTCTG-TGCA s fr1.chrUn 23789841 306 + 349519338 CCGCCTGTTGCCGAGGCCCCGCCTGTT---------GCCGAGGTGCCGC------------------------------------------CTGTAGCCGCGGTGCCGCCTGTTGCTGAG---------------GCCCCGCCTGTTGCTGAGGCCCCGCCTGTTACCGAGGCACCGCCTGTTGCTGAGGCCCCGCCTGTTACCGAGGCACCGCCTGTTGCCGAGGTGCCGCCTGT-AGCCGCGGTGCCGCCTG--TTGCTGAGGCCCC---------------GCCTGTTGCCGAGGCCCCGCCTGTTGCCGAGGTGCCGCCTGTGGCCGCGG--TGCCG--CCTGTTGCTGAGGCCCCGCCTGTTACCGAGGCACCGCCTGTTGCCGAGGCA a score=0.0 s hg17.chr17_random 2495034 2 + 2618010 GT a score=707.0 s hg17.chr17_random 2495034 2 + 2618010 GT s panTro1.chr19 42774478 2 - 82489036 GT s mm5.chr11 22357688 2 - 121648857 GG s rn3.chr10 22143226 2 - 110733352 GG s canFam1.chr9 14278350 2 + 53642819 GG a score=54063.0 s hg17.chr17_random 2495036 76 + 2618010 CCCCCTGCTGCCGG---CCCCCCTGCGGCCAGCCGACCCCTTG-CAGCACCACCTGCAGGACCTCCTC------------CTGCTGAGACCC s panTro1.chr19 42763842 76 - 82489036 CCCCCTGCTGCCGG---CCCCCCTGCGGCCAGC-GACCCCTTGGCAGCACCACCTGCAGGACCTCCTC------------CTGTTGAGACCC s mm5.chr11 22357690 88 - 121648857 CTCCCTGCTGCAGG---CCCCCTTGCTGCCAGCCTGCTCCCTG-TCGCACCACCTGCAGGACCTCCCCATGCAACACCTGCTGCTGAGCTCC s rn3.chr10 22143228 88 - 110733352 CTCCCTGCTGCAGG---CCCCCCTGCTGCCAGCCTGCTCCCTG-TCGCACCACCTGCAGGACCTCCCCCTGCAACACCTGCTGCTGAGCTCC s canFam1.chr9 14278352 79 + 53642819 CGCCCTGCTGCCGC---CCCTCCTGCTGCCAGCCTGCCCCCTG-CCGCACCACCTGCAGGACCTCCCC---------CTGCTGCTGAAACCC s fr1.chrUn 23790147 73 + 349519338 CCGCCTGTTGCCGAGGCCCCTTCTGTTGCCGAGAACCCGCCTG-TTG------CCGTGGTGCCGCCTG------------TTGCCAAGGCCC a score=136445.0 s hg17.chr17_random 2495112 402 + 2618010 CAA-TGCCCCCACAGAGCAATACACTGAAGCCTAAACA------TCTATCTGGTGTTTT-------------------TAAAAAGTTAAAAGAAAAATAGATTTTTTTTCACAAGGTGACAATAG-------TGATTTTTACCA-TCTGGATACAGCCTGGTGTAAGCAGACGTCCATTACCACCCTCACCCACATTTTCAGGTGTCTACATCAG----CCTTAGTCATTATGGATAGTAAATCGACCTTTAAGAATTCCTGGGGTGGACTTTGCAAACACATTCTACAACCTGATGGTTTTTACTGCTCAAACTGTCACCATCATCTTTTGCAATGTGTTGCTCAC-TGTTGTCAATAAACTAATTTTTCCTGGCATAGCAGACTGCCCTGCTCCCTGATTTGTTCGTTAGTGCATGTTTATTAGCGTACACAGATAAGC s panTro1.chr19 42763918 402 - 82489036 CAAATGCCCCCACAGAGCAATACACTGAAGCCTAAACA------TCTATCTGGTGTTTT-------------------TAAAAAGTTAAAAGAAAAATAGATTTTTTT-CACAAGGTGACAATAG-------TGATTTTTACCA-TCTGGATACAGCCTGGTGTAAGCAGACGTCCATTACCACCCTCACCCACATTTTCAGGGGTCTGCATCAG----CCTTAGTCATCATGGATAGTAAATCGACCTTTAAGAATTCCTGGGGTGGACTTTGCAAACACATTCTACAACCTGATGGTTTTTACTGCTCAAACTATCACCATCATCTTTTGCAATGTGTTGCTCAC-TGTTGTCAATAAACTAATTTTTCCTGGCATAGCAGACTGCCCTGCTCCCTGATTTGTTCGTTAGTACATGTTTATTAGCGTACACAGATAAGC s mm5.chr11 22357778 397 - 121648857 TGG-CATCCCCAC----CAGGACAT----GCCTCTACATGCTTGTTCACTTGGGCTTTT-------------------AATAAAATTGAAAGAAA---ATATTTTCCTCCCAAAGGTGGCAACAG-----CTTAACATCCTCCAGCCTGAATACCATGTGAGATAAGGAGATGGCCATTCCTGCCTTATTCCAAATTCCCAAACATCTCTATCAGCGGACATCATTTGCTGTGGATGGTAAAT-GACCTTCAGAAGTCCCCAGAATGGACTGGACAAGCCCATTTTGAGCCCTTTTGATTCAGGCAGATCAAATCTTCACCAGTATC-TCTGCCATGTGTTGTTCAC-TGTT-TCAATAAAATGA-TTTTCCTGGCATAGCAAA-TGCCACACT-CTTGCTTCATTCATTAGTATGTG-TTATTAGTGTGTGCTGATGAGC s rn3.chr10 22143316 401 - 110733352 TGG-CACCCCCAC---GAAGGACATGCCTTCCCCTACACACCTGTTCACCTGGGCCTTT-------------------AATGGAATTGAAAGAAA---ATATCTTTCCCCCAAAGGTGACAACAA-----CTTACCATCCAACAGCCTGGATCCCATGTGAAATGAGGAGATGG-CATCCCAAGCCTATTCCAAATTCCCAGACATCTGTATCAGCAGACATCATTTGTTGTGGATGGTAAAT-CACCTTCAGAAGTCCCCAGAACGCACTGGACAAGTCCATTTTGAGCCCTTGTGATTCGGGCAGATCAAATCCTCACCAATATC-TCTGCCATGTGTTGCTCAT-TGTT-TCAATAAAATGA-TTCTCCTGGCATAGCAAA-TACCACACT-CCTGCTTTATTCATTAGTATGTG-TTATTAGTGTGTGCACAGGAAC s canFam1.chr9 14278431 409 + 53642819 CCACCATCTCCAAAGAGCAACTCACTGGAGCCTAAGCA------CCTATTCTGCATTTTAAGAAAGTGGAAAAAAAAAAAGAAAGTGGAAAGAAAAATAGATATTTTT-CATAAAGCAACAATAGTCATTTTTACATCCCACCA-TTTGGATAC--------ACAAGCAGATATCCATTGCCACCCTCAGCCAAATTACCAAGTGCCTCCATAAG----CAGAAAACACCATGGATGGTAAATCTTTCTTCAGAAGTCCTCAGAGTGGACTCTGCAAACCCATCCTGAATTCCGAAG------GCAGCTCAAACCCTCCCTGCCACCTTTTGCAATGTGCTGTTTGCTTGTTTTCAATAAATTAATTTTTCCT------GTAAACTTCCCTGCTCTCTGATTCATTCAGCAGTGCATGTTTATTAGTGTACATGGCTGAGC a score=7888.0 s hg17.chr17_random 2495514 29 + 2618010 AAGATTTTGGAACCTGCACAAGGGAAACA s panTro1.chr19 42764320 29 - 82489036 AAGATTTTGGAACCTGCAAAAGGGAACCA s mm5.chr11 22358175 28 - 121648857 AGGAGTCTAGACTCTGCCCAA-GGAAACT s rn3.chr10 22143717 29 - 110733352 AGGAGTCTAGACTCTGCCCAAGGAAAGCA a score=5345.0 s hg17.chr17_random 2495543 48 + 2618010 AAGCTCAACCTAAGCAAAACCTTATCCATAGAAATCTCATCTattcag s panTro1.chr19 42764349 48 - 82489036 AAGCTCAACCTAAGCAAAACCTTATCCATAGAAATCTCATCTattcag s mm5.chr11 22358203 37 - 121648857 GAGTTCATTTGTCTCAAA----TATCC-------TTTCATCTACTTAG a score=67068.0 s hg17.chr17_random 2495591 731 + 2618010 tcattcaggaattgtttatcaagggacctccagttgacaggtgctgcctgattagtgatgaacaagctacatgccttgtatccaagaagcttatggtctaatggaatagacaaaaggaaagacaatgttcatgaagaggggtagaagtgggaATAGCATATGCCAAGCCCAGAATGACCACTGGTAGTAAACTGACCAGCACAGCGCATCTCATCTTCTTACCACAGTTCCTAGAGTAGCATttttcaaagtgtggcccatgcgtcatacacaatagaatctcttgcaattgcctattaaaatgcacattcttaggccccaaaccaaacctaatgaatcaaaatctctgggagtggggcccaaggctgtttattttctatcacttccatgtaattcATTAGAATTTCAGGACCATTATTTCAGAGGAAGACCAGGATTTGAGCTCCTTGAGGGCTTAACAAGCATGGCCTGGAAGCCTTCCAAGAATAGTCACAAGGACAAGCCACAATGAAGACACCCAAAGTGAAGAAAAAAATGTAATATAATAATAAGTATGAAACAGCACCTGCTAAACTGTAATCAGAAGAATCGGTTTGGCAGAGAAGTGAATGTAAATGAATGTGCAAAAAAA-CAGTATCTTGAGTTTGTCATAGGTGGAATAAAATGACAACaaaaaaagagagacaaaaagtaagagataagggatgaataaaaagtgaagaggggaggca s panTro1.chr19 42764397 731 - 82489036 tcattcaggaattgtttatcaagggacctccagttgacaggtgctgcctgattagtgatgaacaagctacatgccttgtatccaagaagcttatggtctaatggaatagacaaAAGGAAAGACAATGTTCATGAAGAGGGGTAGAAGTGGGAATAGCATATGCCAAGCCCAGAATGACCACTGGTAGTAAACTGACCAGCACAGCGCATCTCATCTTCTTACCACAGTTCCTAGCGTAGCATttttcaaagtgtggcccatgcatcatacacaatagaatctcttgcaattacctattaaaatgcacattcttaggccccaaaccaaacctaatgaatcaaaatctctgggagtggggcccaaggctgtttattttctatcacttccatgtaagtcATTAGAATTTCAGGACCATTACTTCAGAGGAAGACCAGGATTTGAGCTCCTTGAGGGCTTAACAAGCATGGCCTGGAAGCCTTCCAAGAATAGTCACCAGGACAAGCCACAATGAAGACACCCAAAGTGAAGAAAAAA-TGTAATATAATAATAAGTATGAAACAGCACCTGCTAAACTGTAATCAGAAGAATCGGTTTGGCAGAGAAGTGAATGTAAATGAATGTGCAAAAAAAACAGTATCTTGAGTTTGTCATAGGTGGAATAAAATGACAACaaaaaaagagagacaaaaagtaagagataaggaatgaataaaaagtgaagaggggaggca a score=55167.0 s hg17.chr17_random 2496322 354 + 2618010 aggcaatgaataggaggaagagtgaagaggaagatgatggagatgatgagaaagacagaagaggaaCAGAGACAGGCACTAGGATTCCTGGTACAAGTATTTGGTATTTGAAGATGTTACAGGAGAGCTAGGCCAGTCCTCAGATTACCCATGTGGCTAGGAAGTGTGTGCACATCAGGTGGTCTGCTGCCTGTCCTTTGCCCATCTCTATAGATCCATGTCTCACTGCTCCCCACTAAGATTCACTTCAAGCAACACTGACCTTATAGTTATTAA-ACAT---TTGCAGTTCCAAATGTTTCGCTTTTCCTCATGTTCTTTCACTTATCTG------TTCTTTTACACACTCTTTCTCTTCAC s panTro1.chr19 42765128 352 - 82489036 aggcaatgaataggaggaagagtgaagaggaagatgatggagatgatgagaaagacagaagaggaaCAGAGACAGGCACTAGGATTCCTGGTACAAGTATTTGGTATTTGAAGATGTTACAGGAGAGCTAGGCTAGTCCTCAGATTACCCACGTGGCTAGGAAGTGTGTGCACATCAGGTGGTCTGCTGCCTGTCCTTTGCCCATCTCTACAGATCCATGTCTCACTGCTCCCCACTAAGATTCACTTCAAGCAACACTGACCTTATAGTTATTAA-ACAT---TTGCAGTTCCAAATGTTTTGCTTTTCCTCATGTTCTTTCACTTATCTG------TTCTTTTACACACTCT--CTCTTCAC s canFam1.chr9 14278840 344 + 53642819 AGACAAGGAATAGGAAGAAGGATGAC-------ATGACAGAGAAGATGAGGAAAACAGGAGAGGAA-AGGGAGAGGTGCTAAGAATAGTGGTATGA-------GTCTTGGAAGGTGGTACAGGATGGCCAGGCTAGTCCTCTGACTGCTTACATGGGTAGAAAATCTGT-CATATGGGGTTCTTCGGTCTCTTCCCTTCATCCACATGTCCAGGTTCATATCTCAGCATGCCCCACTAAG--TCACTGCAAATAACACAG--CTCACAGTAACTGGCACATGCCCTGCAGTCCCATATGTCCTTGCTCTTATCATGTTCTTTCATTTATCTGGAGTCTTTTTTTCACCTACCACTTCCCTCCAC a score=0.0 s hg17.chr17_random 2496676 14 + 2618010 CTTCATCACCTACT a score=268.0 s hg17.chr17_random 2496676 5 + 2618010 CTTCA s panTro1.chr19 42765480 5 - 82489036 CGTCA a score=2059.0 s hg17.chr17_random 2496681 9 + 2618010 TCACCTACT s panTro1.chr19 42765485 9 - 82489036 TCACCTACT s rn3.chr10 22143769 9 - 110733352 TCATCTGCT a score=26852.0 s hg17.chr17_random 2496690 81 + 2618010 TAACTCTGATTCATTTCCAAGATTCAATTCAGTCTTCTCCAGTAGTCCTGTCCCAACCCCTGTATcacacaaacacatgtg s panTro1.chr19 42765494 81 - 82489036 TAACTCTGATTCATTTCCAAGATTCAATTGAGTCTTCTCCAGTAGTCCTGTCCCAACCCCTGTATcacacaaacacatgtg s rn3.chr10 22143778 80 - 110733352 TAGCTGTGATTCATTTCTAAGAGTCACCTCAGTC-TCTCCAGAAGACACGTCCTAAACTTCATACCACATATGCGCATGTG s canFam1.chr9 14279184 81 + 53642819 TAACACGGAGTCATTTCAAAGATTCAGCTCAGCCTTCTGTAATTGTCCTATCCTAACCCCTGTATCACATAAACACATGAA a score=9888.0 s hg17.chr17_random 2496771 69 + 2618010 caaatgcatacacacacacacacacacacacacacacatacaGGTTAGGAGCTCTCAGCAAGTTCCAAT s panTro1.chr19 42765575 65 - 82489036 caaatgcatacacacacacacacacacacacacacaca----GGTTAGGAGCTCTCAGCAAGTTCCAAT s canFam1.chr9 14279265 67 + 53642819 CATGTGTGTGCATGTGTACATGCATGTGCACACACACAGA--GGTTAGGTGGCCCTAATATGTGCCAAT a score=55416.0 s hg17.chr17_random 2496840 254 + 2618010 ---------AGCTTACCTCCCTCCCCATAAGGCATTGTATTGAGATTATATGTTTTTTTGCCTCCAAGGAGGGGACCACAGTTTGT---TTTTGGCTTCCAATACTGAGCTCAAAGTTTAATACGTAGCCGGTACTTAATTTCTGTTTGTTTAGTT--GTCAAAATAAAAGGAAATTGTCTTTACCACAAGAATTTTAAAAGGTAGATA-ATTATTTAAAGAAA--------------------------------AAATTTTGGCATTA---GTgtaacttaacctctctgactctcgagttt s panTro1.chr19 42765640 254 - 82489036 ---------AGCTTACCTCCCTCCCCATAAGGCATTGTATTGAGATTATATGTTTTTTTGCCTCCAAGGAGGGGACCACAGTTTGT---TTTTGGCTTCCAATACTGAGCTCAACGTTTAATACGTAGCCAGTACTTAATTTCTGTTTGTTTAGTT--GTCAAAATAAAAGGAAATTGTCTTTACCACAAGAATTTTAAAAGGTAGATA-ATTATTTAAGGCAA--------------------------------AAATTTTGGCATTA---GTgtaacttaacctctctgactctcgagttt s rn3.chr10 22143921 287 - 110733352 ---------GGCTGTCCCACTCCCTAATAAAACCCTACAGTAAGATTATCTATTTCTCTGCATCTGGGAAAAAGATTGCCAATTATCAGCTTTGTCTGTACAGAGGGAGGTCCATGCTTACTACAAGGTCAGTGCTCGTCCCCCACTTATTAAATGAAATTAAATCGCAAAGGAACTGCCTTTACAGGAATAA----AAACAAGAGATA-TTTACTTAGAGCAAAAGCAGACAAAACAAAACAAACAACAGACAACAAAACCTTTCATTGT--ATTTAACTTAAAGTCTCT-ACCTTCTAGTTT s canFam1.chr9 14279332 272 + 53642819 AGCATCCTATGTTTACCTCCCTCCCCATAAGGCATTATCTTGAGATGATCTATTTCTCTGTCTCCAATGAAGGGGCTACAATTTATTTATTCTGACTTTCAGTACTGAGCTCAATGTTTAGAATATGGTTGGTACCTGATTTCTATTTGTTATGTCAAACAAAACAAGAAAGTAATTATCTTCTTTACAAGAATTATAAAAGGTAAATATTTTACTTAAAACAG--------------------------------AATCTTCAGCATCATTAGCATAacttaacttctttgacattcaggttt a score=2806.0 s hg17.chr17_random 2497094 14 + 2618010 tctcatccgcaaaa s panTro1.chr19 42765894 14 - 82489036 tctcatccgcaaaa s canFam1.chr9 14279604 14 + 53642819 cctcatttgccaaa a score=78693.0 s hg17.chr17_random 2497108 383 + 2618010 tgggaaaagcaacatttaccaatgtagattgctagggaagttaaataacaattataactttttatgtatgcaagatgcctggcacatagttaaatgcccagtaaCATTCATTTATATTCCTTGTGGAGCATTTGGACATCACTGTATCGAACAGGCTCAAAA-GATGTGCTATCTACTACATATCAACTCACTGGGAATGGGAACAAATTCAGGGGAGGGCTTTACTAACCAAACTTAAATTGTAATTTTTTTT-CAGGATAGTCTACATCTACCAGTAGGAATAGATTTTCTAATA--------AATATAATGAAGA------AGGCAAAAAAAAAAA----CCCACAACAACTTGGCATCAGATTAAGGCTGTCTCAGAATGAAAATAATCTTTAAAAATT s panTro1.chr19 42765908 388 - 82489036 tgggaaaagcaacatttaccaatgtagattgacagggaagttaaataacaattataactttttatgtatgcaagatgcctggcacatagttaaatgcccagtaaCATTCATTTATATTCCTTGTGGTGCATTTGGACATCACTGTATCGAACAGGCTCAAAA-GATGTGCTATCTACTGCATATCAACTCATTGGGAATGGGAACAAATTCAGGGGAGGGCTTTACTAACCAAACTTAAATTGTAATTTTTTTTTCAGGATAGTCCACATCTACCATTAGGAATAGATTTTCTAATA--------AATATAATGAAGA------AGGCAAAAAAAAAAAAAAACCCACAACAACTTGGCATCAGATTAAGGCTGTCTCAGAATGAAAATAATCTTTAAAAATT s rn3.chr10 22144430 316 - 110733352 TGGGAAACGGAGCACTACTCAATATAGATCTCTGGAAAAGTTGAGCGATGACTAAGGGTT----------------------CACACA-CTAAATGTTCAGTGCCA-----TCATACT---------GTGTCAGAGCATCTCTATGCCAAACAAACTTAAAACAAAATGCTCTCCAGTTCAAATGAAGTCACTGAGAGTCAGAGAGAATTCAGGAGAAA--TTGTGTGCATACATTTCAAT----ATTTTTTTC-TGAGATACCTCACATGCCCCAGCAGAAATACATTTTCTAATT--------AAT-----------------------------------GCCAATATACCTTGGTATCAGATTAATATGGTCTCTGAATGAGGGAAATCTTTAAAGCTT s canFam1.chr9 14279618 364 + 53642819 tgggaaagttaatacttaccaatgtagattgctgggaaagttaaatgac-----------cttatgtatgtaaagtgcctggcacaca-gtattcacccagtaCCATTCACTGATATTCCTTGCTACACATTTGAACATCACTGTATCAAAGGGGCTCAAAA-GATGTTCTATTCATTACATATTATGTCACCGAGAATGGGAGAAGGCTGAGGGGAAGGCTTT---------------------TTGTTTTTT-CAAGATAGTCCACATCCACTGGCAGAAACAGATTTCCTAATATAACAAAGCATATTCCTAAGATTTCCTAAGTATAAGAAAGGA----GGAAAAAAAATTCATCATCATATTGAGGCCAACTCAGACTGAAAGTGTCCTTTAAAAGTT a score=15653.0 s hg17.chr17_random 2497491 67 + 2618010 CATTCTACAAGTCCACAGGAATGAGTCCTAGATTATAGG--ATTTATGAATAGGAGTGCAGCATCAGGT s panTro1.chr19 42766296 67 - 82489036 CATTTTACAAGTCCACAGGAATGAGTCCTAGATTATAGG--ATTTATGAATAGGAGTGCAGCATCAGGT s rn3.chr10 22144750 69 - 110733352 TAGCTTTTAAATCAATAGAAACAAGCTCTAGACTTTAGGATATTTCCAAGGAGGGTTTAATAACCAGAG s canFam1.chr9 14280208 67 + 53642819 TGCTATGCTAATCCATAGGAAAGAGCCCTAGGTTACAAG--ATTTATGAATAAGGGTTTAGTGTCGGGA a score=48593.0 s hg17.chr17_random 2497558 140 + 2618010 ---AAAAGAAGGATTGAGCAACATGTAAGTATCTGATGGTTCGACTCTTTCTTTCACATTGAACCTTCCAAGGGAATTAAACAACTCAAAGCTGTAATAGACCTCAAAAGATTACTTTG------CCTTCCCTGACTTTAGGCAAATGA s panTro1.chr19 42766363 140 - 82489036 ---AAAAGAAGGATTGAGCAACATGTAAGTATCTGATGGTTCGACTCTTTCTTTCACATTGAATCTTCCAAGGGAATTAAACAACTCAAAGCTGTAATAGACCTCAAAAGATTACTTTG------CCTTCCCTGACTTTAGGCAAATGA s mm5.chr11 22360112 132 - 121648857 ---AAGAGCAATACTATGCACTATGT--GTATCTGAAAG------CCTTTCTCTTGTACCTGCCCATTCAAGGGAATTTAAAATCTAAAAGCAATATGAGATTCCAAAAGACTGGTTGA------ATTTTCCTGACTTCAGGCCGATGA s rn3.chr10 22144820 129 - 110733352 ------AATAGCAATATGTACTATGT--GTATCTGAAAG------CCTTTCTCTTCTAATTGCCCATTCAAGGGAAATTAAAATCTAAAAGCAACAGAAGATTGCAAAAAATTAGTTTA------ATTTTCCTGACTTTAGGCAGATAA s canFam1.chr9 14280275 142 + 53642819 ACAAAGAGAGCTGGGAAATAATACAT--GCATCTGATGG----ACTTTTCTTTCTACTCTGAACCACCCAAAGGAATTAAACAACTCAAA-CTGTAAGAAACTCTGAAAGATTACTTGGGTTAGTCTTCCCTGGGCTTCAGGCAAATGG a score=-1564.0 s hg17.chr17_random 2497698 41 + 2618010 ATATCTAAA------AAA----------------------------------------CTCAGATGAAATTTT--------------------------------------------------------------------------------TAAAAAAATTCTAG s panTro1.chr19 42766503 40 - 82489036 ATATCTAAA------AA-----------------------------------------CTCAGATGAAATTTT--------------------------------------------------------------------------------TAAAAAAATTCTAG s mm5.chr11 22360244 140 - 121648857 ATATTTAAACTTAAGAAAGATTAGTTGGATGTATGGTTGATA-----------GATTGTTTATATATAATTTTATAATCTGTGATATATACATGTACAT----------------TACACACACACACACACACACACACACACACACTTAAATATACATGCTACAG s rn3.chr10 22144949 156 - 110733352 ATATTTAAACTTAAGAAAGATTAGCTA-----------GATATATGGTCAGTAGATTATTTATATGTAATTTTATAATCTGTGTTATATACATGTACATCACACACACACACACACACACACACACACACACACACACACACACACACTTACATATACATGCTACAG a score=81184.0 s hg17.chr17_random 2497739 362 + 2618010 CAACAAATTCCACCAGTCCCCTGATCATTT--AGTTTTTCTGTCTCTCACAACTAAACTCTTTTCTTTT-----CTAATTATAT-----CTAATTAATTATATCCCTTTC-TCTGTCTTCCATGTTTGTATGGATTTTATGATAAGCC-AGCCTCTGAAGAACACCAGGCACCGAAGACTCTGcccattttacaga--tgaggaaac---c-tggctaagggtaagtcatttactctaag--ttagacaactgcaaagaggtggagaaaggactggaatccttctttatcttctccattttcctcctgcccTGTGCCCGTCAATATTCCCCATCC-CATCCCTGACTCTTATGATTGGAGGATATTTTTAAGATTATTTCTGAGA s panTro1.chr19 42766543 362 - 82489036 CAACAAATTCCACCAGTCCCCTGATCATTT--AGTTTTTCTGTCTCTCACAACTAAACTATTTTCTTTT-----CTAATTATAT-----CTAATTAATTATATCCCTTTC-TCTGTCTTCCATGTTTGCATGGATTTTATGATAAGCC-AGCCTCTGAAGAACACCAGGCGCCGAAGACTCTGcccattttacaga--tgaggaaac---c-tggctaagggtaagtcatttactctaag--ttagacaactgcaaagaggtggagaaaggactggaatccTTCTTTATCTTCTCCATTTTCCTCCTGCCCTGTGCCCATCAATATTCCCCATCC-CATCCCTGACTCTTATGATTGGAGGATATTTTTAAGATTATTTCTGAGA s mm5.chr11 22360384 245 - 121648857 AAACAAATTCACTGAGTTCCCTAACCATT----GCTTTTCTGAATTTTGAAATTTGACCATCTTCTCTT--------------T-----TTGGTTAATTATAT------------TCATCCA--TTTGTGTG--------AATAAATC-AGTCTGTGAAGAACTCCAGGCAGTGATGACT----CCACTTGACAGA--TGCAGAAGC---TGTGGCTGGGAAGATGTCCTTTGC-CTGAG--ATACACAG-------------------------------------------------TTCCCTCTTCCC--------TCAACCCTCCCCATCCTCATTTCTGGCTCCTATGA-------------------------CTATGA s rn3.chr10 22145105 280 - 110733352 AAACAAATTCGCAAAGTTCCCTGACCATT----GCTTTTCTGTATTTTGCAATTGGACTATTTTCTCTTTTTTTTTAATTATATGCATGCTGGTTAATCATAC------------TCATTTG--TTTGTGTG--------GATAAATC-AGCCCAAGAAGAACTCCAAACAGAAATGGTG----CCATTTGATACA--TGAGGAAAC---CGTGGCTGGGAAGATGTCATTTGC-CTGAG-----------------------------------------------------------TTCCCTCTTCCC--------TCAACCCTCCCATTCT-CATTTCTTGCTCCTGTGACTGGAGAATATTTTAAAGATTGCTACTCAGA s canFam1.chr9 14280589 352 + 53642819 AAAAAAATCCCACCCACTCCCGAATCATCTAGAATTTTTCTATCTAAAACA-----------TTCTCTT--------------T-----TAAATGAATGATATCCATTTCTTTTGTCTTCCGC-ATTGTACAGATTTCATGATAAACCTGGCCTGTGAACAACATCAGGAACAGAAGACTCTTCCCCTTTTACACAACTGAGGACACATGC-TGGCAGGGGACAGGG-ATCAGCTGTAAGCCACACACAACTTCGAGGTAAGAGAGGAAGGATCTGAAGCCCTACTTGTCTTCCCAATCCTTCTTCTGCCCTTTCTCCCTCATTCTTCCCCATATCCATCTCTGCCTCCTATGATTGGAGGATATTTCAAAGATCATTTTGGAGA a score=201317.0 s hg17.chr17_random 2498101 606 + 2618010 ACGAAGTCCTTAAGG-AATGTATTTTCTAATTTTAGAATTTTAATAATTTTCCTAACATCTAGTGGCTT---CCAGACTAGTTCCTAACAAAATATAATTCATAAAACTATTAAGAAGAGGGCATGGCCCACCATCACAAGAGGTCACCAACACTACATTCTTTATCTATCCAACTACAAAAATCTCACAAGTTATTTTCACTGTGCTTCAGATTTACTTGTTTCCATCCTGGTGATTATGCACTTGAAGAATGTGTGGAACTTGAATAACATGACTAAAAAAGTCCATGTGGTAAAGaccagggatacatctcttgtccaatagcttagga-ctattaatgtgctacagcaagggagaccacatggctgaggaccatggggcatcctcccaaacaaaggaggagaaatgttattataaaatgttga-----ggaatggtgggg-----taaaattacgtgacatagtgttttcataggctc-aagaaaaacagggctgtgtataaaaaataattaacaccagacctgagctgtgaaacagacttatggtcc-tctttcactggaaactgt-ata-gttgagacaaatggggaatgttgtgtctgcaagtcacttgtctgaaatt s panTro1.chr19 42766905 607 - 82489036 ATGAAGTCCCTAAGGGAATGTATATTCTAATTTTAGAATTTTAATAATTTTCCTAACATCTAGTGGCTT---CCAGACTAGTTCCTAACGAAATATAATTCATAAAACTATTAAGAAGAGGGCATGGCCCACCATCACAAGAGGTCACCAACACTACATTCTTTATCTATCCAACTACAAAAATCTCACAAGTTATTTTCACTGTGCTTCAGATTTACTTGTTTCCATCCTGGTGATTATGCACTTGAAGAATGTGTGGAACTTGAATAACATGACTAAAAAAGTCCATGTGGTAAAGaccagggatacacctcttgtccaatagcttagga-ctattaatgtgctacagcaagggagaccacatggctgaggaccatggggcatcctcccaaacaaaggaggagaaatgttattacaaaatgttga-----ggaatggtgggg-----taaaattacgtgacgtagtgttttcataggctc-aagaaaaacagggctgtgtataaaaaataattaacaccagacctgagctgtgaaacagacttatggtcc-tctttcactggaaactgc-ata-gttgagacaaatggggaatgttgtgtctgcaagtcacttgtctgaaatt s mm5.chr11 22360629 561 - 121648857 ATGGACTCTCTATGA-AAAACATACTCTGTTTTCAGAATTGTAG-ACACCCCCTGACATCTAGAAGCCCCCGCCAACCTAGTTCCTGAGAGGACACAA-TCATAAAACTATTGAGATGAGGACACGGCCTACCAACA------GTCACCATCATTATGTTCTTTGCCAATCAAATGAC--AAGTCTCATGATTAATTATCATTATCCTTAAAATGTGCATATTCCCA--CTGGTGATTACACTCTTGCAGAATGCTTGGAACTAGAATAATATGAGATTAAAAGATCATGTCATAAAGTTTAGGGACAGTCTCCATGT--AACAAGTCCAT--CCCTGACTGTGTGTCAGCAAGAG------------------------------CTCTAGAGCAGAAGAACCAAAA-GTGGTCGTAGGAT-CTGACCGTGGCAGCGTTCTGG-----TATCCTTGCACGGGATTGTGTCTGGATAAGCT-------GAACACGACTGTACACAAAACAT--CCAATGTCAG-TGTGGGTTATGGAACAAACATATGACCCATCTTCCAGAGGAAATAATGATATGGTGAAAGGAAAGAACAGTATTACAACTTCACATCTCCTACCTGAAATT s rn3.chr10 22146967 557 - 110733352 ATGGATTCCCTATAA-AAAGCATATTCTGTTTTCAGAAATTTAG-ACACCTCCTGACATCCAGAAACCC---CCAAACTAGTCCCTGAGATGACACAA-TCATAAAAGCATCAA-ATGAGGCGACGGCCTACCAACA------GTCACCATCATTATATTCTTTTCCAATCAAACCACAGAAGTCTCACAGTTAATTATCATTATCCTTAAAATGTACATGTTTCCA--CTGGTGATTATGCCCTTGCAGAATGCA-GGAACTGGAATAATATGGCATTAAAAGCTCATGTCATAAAGTTTGGGGACACTCCCCTTGC--AACAAGTCCAT--CCATGAATGTGTGTCAGCAAAGC-------------------------GCAAGTGC---AGCAGAAGAGCCAAGA-GTTGTCATGGGGT-CTGAAGGTGGTGGCATTCTGG-----TATCCTTGCAGGGAATTATGTCTGAATAAACT-------GAACTCCACTGTACACACAAGAT--CCAACATCAG-TGTGGGCTGTGGAACAGACACAGGACCCACCTTCCACAGGAAATGAT-GT--GGTGAACAGAAAGGGCAGTGTTACAATTTCATATCTCCTACCTAAAATT s canFam1.chr9 14280941 592 + 53642819 ---------ACAGGG-AATGCATATTCTGTTATCAGAATTTAAA-AATCTTCCTAACATCTAGTGGTTT---TCAAACTAGTTCCTAACAAAACACAAGTCATGAAACTTTGAAGAAGGGGGCATGGTTCACCATCAGAAG--GTCACCAACATTCCATACTTTTTCAATCCAACCACAAAAATTCCACAATATATTGCCATCATGGTTAACATTTACTTGTTCCCACTCTGGTGATTATGCTCTTGCAGGACATCTGGAATTCAAATACTAGGACTAAAAAAAGCCAAATGGTAAAGAATGgggaca-atctcttgtccaacaagcttaggcttattcatgtgctacagcaaagaagactgtacaggaaaggaccagggg----catcccacccaaaaaaggaaaagtttttttataggattttga-----agaatggtagatttatctaaaattacacaaaatggtgttttaatgggttcaaagcaaaagaggggtttgcgcaaaggaa--ttaacatcaggactgggttgtgata-ggactta-ggtct-cctttctttgaaaactgc-ata-gttaagataaatgagcaatgctgtatctgaaaatctcttttctgaaact a score=21976.0 s hg17.chr17_random 2498707 140 + 2618010 ctgtacctgggttgg-gtactgaggttgc--ttctctgtccagatgacttagatcctgtcta-ggcaagagtgaaatgtttccttcttactgatgtggcttggaag-agcaaggtttctaacagcctataattttagaaaacagt s panTro1.chr19 42767512 140 - 82489036 ctgtacctgggttgg-gtactgaggttgc--ttctctgtccaaatgacttagatcctgtcta-ggcaagagtggaatgtttccttcttactgatgtggcttggaag-agcaaggtttctaacagcctataattttagaaaacagt s mm5.chr11 22361190 88 - 121648857 ------TGGAGTCTT-GTACT--AGTTAC---TATCTGTTGTGACAACAT---TCCTGACTGTGGCAA-------------------------------TTGAAGGAAGCAAGGCTTTT-----------ATTTTAAAGTGCAAT s canFam1.chr9 14281533 143 + 53642819 ctgcctttgtgttggaatattgaggctaccattctgtgttaaggcgactcagatcttttcct-agaaatagtgggctcttccattcttactgatatggcttgaaag-agcaaagtttctgacagtctatgatttcaggacccaga a score=69701.0 s hg17.chr17_random 2498847 417 + 2618010 atttcttagtACTGTGTTCTTTT-----GTTAACAAAAGCAGTGGATTTACAGACATATTTCTCTTTTTAGT-TTGGCATCTCTGTATACATTCCAAAACAAAGAACAGAATGCTAAACCATGTATCAAGTGAGTACTTATTTTATTTCACTAAAGGGAATAAAACTT--TTTAATAACTACTGCTACATGTTATCTATTTTG-AGTGACTCCGAGTTGGAAAAAGACTGGGAGACA-TCACCAGTGTTTCTACTCCACAGAAGACCTGTGGTATTGCTAAATATTTGCCACTCTTTGATCCGTACGACTTTGGAGGAATTCATTTTGTAAATCTGGTCTTCCAAAAACTGTGATGGACTATGATGGATCATAGACTCAAAGGACTTCAAAGATCAGGGATATGATAGACCAAAGGGTGTATTTTTA s panTro1.chr19 42767652 417 - 82489036 atttcttagtACTGTGTTCTTTT-----GTTAACAAAAGCAGTGGATTTACAGACATATTTCTCTTTTTAGT-TTGGCATCTCTGTATACATTCCAAAACAAAGAACAGAATGCTAAACCATGTATCAAGTGAGTACTTATTTTATTTCACTAAAGGGAATAAAACTT--TTTAATAACTACTGCTACATGTTATCTATTTTG-AGTGACTCCGAGTTGGAAAAAGACCGGGAGGCA-TCACCAGTGTTTCTACTCCACAGAAGACCTGTGGTATTGCTAAATATTTTCCACTCTTTGATCTGTACGACTTTGGAGGAATTCATTTTGTAAATCTGGTCTTCCAAAAACTGTGGTGGACTATGATGGATCATAGACTCAAAGGCCTTCAAAGATCAGGGATATGATAGACCAAAGGGTGTATTTTTA s canFam1.chr9 14281676 421 + 53642819 atttcttagtATTCAGTCTTTTCTGTTAGTTAACAAATGCAGTTAGTTTATAGACATCTATCTATTCCTAATATTTGAATTGCTGTATATATTCTAATAAAAAAAACAGTACACTAAACTGTAAATCAAGCAAGTTTCCATTTTATTTCAATAGATGA---GAAACTTGATTTGATAACTATGATTACCTGTTCACTAGTCTGAAGTAACTGAGAGTTGG-AAAAGTCTAGAGGTCATTCATCGGTGTTTATAGTCAAGAGAAGACC-ACACTGTCGTCAACTATTTACCATGCTTTTATCTGCATGACTTTAGAGAAA-TCATTTCACAAATCAAGCCCCTCAGAACCTGTGAAGGACTATTATGGGTCACAAACTCAAAGACCTTCAAGGACCTGGCCTGTGGCAGACGAATGAATGTATATATA a score=-222.0 s hg17.chr17_random 2499264 20 + 2618010 ----AAAAGAGAAAACAAAACAAA s panTro1.chr19 42768069 20 - 82489036 ----AAAAGAGAAAACAAAACAAA s mm5.chr11 22361608 20 - 121648857 ----GACAATCCAAACTAGCCATC s canFam1.chr9 14282097 19 + 53642819 TGTGGTCATATCAAATAAA----- a score=95295.0 s hg17.chr17_random 2499284 287 + 2618010 ACACAC-CTCAGAGGTAAATTTGCACTGAAGACC-ATCAGCATTCCTTGGACAATGTTATCTTTAATCTACCTTCCAACTCTAAATTTATTTTCTGTATTC--CTATTCATCTTTGCTATGGCTGGAAAAGAC-AAAGCTATTTTATTGGTCACCAGCTAAACTAATTCCCCTTGTCTTTTTCATAATGCCACCTTCCCACCTCATAAACAAACAAAACCCTCAGCCAACAAACTAAAGA---AGCTGTGACAGAAAGATAATTGATTCCTTTGTAGATATTGTCCATAGATTTT s panTro1.chr19 42768089 287 - 82489036 ACACAC-CTCAGAGGTAAATTTGCACTGAAGACC-ATCAGCATTCCTTGGACAATGTTATCTTTAATCTACCTTCCAACTCTAAATTTATTTTCTGTATTC--CTATTCGTCTTCGCTATGGCTGGAAAAGAC-AAAGCTATTTTATTGGTCACCAGCTCAACTAATTCCCCTTGTCTTTTTCATAATGCCACCTTCCCACCTCATAAGCAAACAAAACCCTCAGCCAACAAACTAAAGA---AGCTGTGACAGAAAGATAATTGATTCCTTTGTAGATATTGTCCATAGATTTT s mm5.chr11 22361628 269 - 121648857 ACACACACTCAGAGGCAAACTTGATCCAGAGTCC--TCAGCAATCCTTGTCCAATG----CATACAGCAGCCTCCCAAACCTTGACTTATCTCTGGTATCTGACTAT----------TGTAGTGGTGATACAT-AAAATTCTTTATGCAGTCACTA-CTCCACTAAGT---CTTGTCCTTCTAATAATCTTATA-TCATATTTTATAAGCAGTCACAATTCTCAGCCATCAATCCACATA-TTGACT---ACAGTAAGATAATTGATTCCTCCTCAAATATGTTCAATAGATTTT s rn3.chr10 22147936 269 - 110733352 --ACACACTCAGAGGCAAACTTGATCCCAAGGTC-TTCAGCAACCCTTGTTCAATG----CTTACAGTAGCCTCCCAAACCTTGACTCGTCACCTTTATCC----------CCTTGTTGTCGTGGTGATACAC-AAAGTTCTTTATTCAGTGACTA-CCTCACTAAAT---CCTCTCCTCTTAATAACCTTATC-TCATAGTTTAGAAGCCGTCACAATTCTCAGCCAACGACCCACAGTATTGACT---GCAGAAAGATAATTGATTACTTCTCAAATATTTTCCATAGATTTT s canFam1.chr9 14282116 286 + 53642819 ACATTT-TGTGGAGGCAAATTTGGTCTGAGAGTCAATCAGCAAGACTTGGACAATGTCATCCTTAATCTACCTTCTAACTCTACATTTATTATTTATACTC--CCACTTTCTTTAGCTGTGTTTGAGACAGACAAAAGCTATTTTATCAGTCATCAGTACACCTGGTTACCCTTGTTTTCTC--TGAAGCCAATTTCGCACTTCATAAGCAACCA-AACCCTTAGCCAACAGACTGAAGCATCTACT---AGAGAAAGATAATTGATTTCTTTATAAATATTTTCAATATGTTTT a score=2451.0 s hg17.chr17_random 2499571 16 + 2618010 TAAGTATGTAATACAA s panTro1.chr19 42768376 16 - 82489036 TAAGTATGTAATACAA s canFam1.chr9 14282402 16 + 53642819 GAAGAACTCAGTACAA a score=0.0 s hg17.chr17_random 2499587 1 + 2618010 A a score=273.0 s hg17.chr17_random 2499587 1 + 2618010 A s panTro1.chr19 42768392 1 - 82489036 A s mm5.chr11 22362098 1 - 121648857 A a score=9049.0 s hg17.chr17_random 2499588 54 + 2618010 GTGCATAT-GTCAAAGCAAGAAAGCAAGAAATAGCCCAATTTCAATTTTATTTCT s panTro1.chr19 42768393 54 - 82489036 GTGCATAT-GTCAAAGCAAGAAAGCAAGAAATAGCCCAATTTCAATTTTATTTCT s mm5.chr11 22362099 32 - 121648857 TTGCCTCT-GTCGCACTTAGGAAGCAAGAAATA---------------------- s canFam1.chr9 14282418 55 + 53642819 GTGTTTATGGTCACACCTGTAAAGAAAGAGCAACCTCAATTTCAATTATATTTCT a score=349511.0 s hg17.chr17_random 2499642 877 + 2618010 AGGTCAATAATCAGGGAAGGGC--ATTCAGAAAGGCACAGA-ATGAATGAAATCCCCATTTAGTTTGACCTTATTGTTCCCAGAAAAGTTCTTTCCCTTTAATTGCTTGATTTATCTTTGTCTTGCCTTACTAAAAGTTATGATTACTATGTGATAGGAAACTATTTGAAAGCTATTTTTCTTTCCTTTCCCCCTCCACCCCCAAATAGTACAGTACCATCTACATAATAAGTGTCTCATAAGTGTTAATGAGTTATAAACCAACTCAGA---TTACTAAAATAAAATCAGTCTAGCAGCTTTGGTGATGATTTTCTTATAAACAAGGT-------TAGGCACTGTGTCATTAAACACTGGGCCATTCTTTCCATAGCAGAATCAATACACATCTGCTCTTATGAGCCATTTTGGT--------------TTTTAAGAAATTCTTGCTTGATCTCAATGCCAATCAGAAACCCAGCCTGTGA-CTCATGAACATTCCAGTCCCATGCTTAAGTCACGGATGGC------AGCGAACAAGAGGAAAGTGTGATGGTGG-----CTGGATTCTTCAAACTTGCACCTTCTCACATGGCATGGCCTGGAAGGACTAGCTGATAGATGAGCAATTGTTCTGATGATATACATGACCAGGTATTCCGTTCT---AGGGAAAAAGTAGACAGGTAGAAAACAAAGCATTCTTTAGTGATTTAGGGATCGCTGCCTCAGCAGTTAAATCCAGAGTTCTC-ATTTCAACGGGCAGCTACAACTCCAGGAAATGACCTCATGTCCT--GGGGGTCATCAGCATCCAGCTAGGATATATAAAGGGCCCAGAGTGGAACGAGGACATTCACACCTGAGAACATCCAGCTCCTCTCAACAGCCCAA-CCCACACCAGCCTCAGACACCACCATGA s panTro1.chr19 42768447 877 - 82489036 AGGACAATAATCAGGGAAGGGC--ATTCAGAAAGGCACAGA-ATGAATGAAATCCCCATTTAGTTTGACCTTATTGTTCCCAGAAAAGTTCTTTCCCTTTAATTGCTTGATTTATCTTTGTCTTGCCTTACTAAAATTTGTGATTACTATGTGATAGGAAACTATTTGAAAGCTATTTTTCTTTCCTTTCCCTCTCCACCCCCAAATAGTACAGTACCATCTACATAATAAGTGTCTCATAAGTGTTAATGAGTTATAAACCAACTCAGA---TTACTAAAATAAAATCAGTCTAGCAGCTTTGGTGATGATTTTCTTATAAACAAGGT-------TAGGCAGTGTGTCATTAAACACTGGGCCATTCTTTCCATAGCAGAATCAATACACATCTGCTCTTATGAGCCATTTTGGT--------------TTTTTAGAAATTCTTGCTTGATCTCAATGCCAATCAGAAACCCAGCCTGTGA-CTCATGAACATTCCAGTCCCATGCTTAAGTCACGGATGGC------AGCGAACAAGAGGAAAGTGTGATGGTGG-----CTGGATTCTTCAAACTTGCACCTTCTCACATGGCATGGCCTGGAAGGACTAGCTGATAGATGAGCAATTGTTCTGATGATATACATGACCAGGTATTCCGTTCT---AGGGAAAAAACAGACAGGTAGAAAACAAAGCATTCTTTAGTGATTTAGGGATCGCTGCCTCAGCAGTTAAATCCAGAGTTCTC-ATTTCAACGGGCAGCTACAACTCCAGGAAATGACCTCATGTCCT--GGGGGTCATCAGCATCCAGCTAGGGTATATAAAGGGCCCAGAAGGGAACGAGGACATTCACACCTGAGAACACCCAGCTCCTCTCAACAGCCCAA-CCCACACCAGCCTCAGACACCACCATGA s mm5.chr11 22362131 824 - 121648857 ----TAATAATCAAGAGACAA---ATTTAGAAG---ACAGGCATGAGTAAAACTGTCACTTGGTTTGATCTTATTT------ACAAAGTTTTTCACCTTAAATGGCT---TTTAGTTTTAGCTTGTCTCCTTACAAATCGTCACTGCTCTGTGGTAGGAAAT--TTCAAGGCCTAGTTTTTTCTTCTCTAT-------CCCCCAAATTGTCCTGTTC-----ACATATTAAGTGTCTCATGAGAAGTTTCCAGTTACGGGACAATTCAAGACCTTTCTCAAAT---GCCACTCTGAT-GCTTTGGTGACTCAGTCTCCAGGAACAAGGTAA-----TAATCCATTTTCCA-GAAGCCCTGGGGCATATTTTCCATAACAACATAGACACACACCTACTTTTATGAGCCATCTTGGC--------------TCTTCAGGAATTGTTACTGGGTCTGGATGTCACTCAGAGCTCAGGCTGGTGA-CTCATGTGCATTGTAGGCTCACACC---GACTCAGA-GAC------TGTGAACAAGGGGAAAGTGACATCACCA-----GTGTGTCCTCTGGACTTTCAATCTGTCACATGGTCTAGCCTGGGAGGATTGACTGACAGGTGAGCAATAGTTCTGATGATACAAATTACCAAGTGTT-CATTCC---AAGGGAATAGGAGAAGGCTAGGAAGAAAAGCATCCTTGCA-GATATTAGAAATGTTGCCT-GGCAACTGAATCCAGGGCTCTC-TTTTCATTGGGTAACCACAAGTCCAGGAAATGGCC-----------GTTGGTCAGCACTGTTCA-----GGTATATAAAGGGACCCAACCTAGAC-AAGACA-TCGTACCTGAGAACTCCCAACCTCTCCTCACTTCTCAGCCCCACTCCAGCC-CAGACACCACCATGA s rn3.chr10 22148449 834 - 110733352 AGAACTATAATCATCAAAAACCAAATTCAGAAG---ACAGGCATGAGTAAAACCTTCATTTGGTTTGATCTTATTGACCTTTAAAAAGTTCTTCACTCTTAATGGCT---TTTAGCTTTAGCTTGTCTCCCTACAAATCGTCACTACTTTGTGGTAAGAAA---TTTCAGGGCTTAGTTTTTCTTCTCTCT-------CCCCCTAATTGCCCTGTTC-----ACAAACTAAATGTCTCCTGAGAGGTTTCCTGCTACAGGACAATTCCAGTCCTTTCTAAAAT---GCCACTCTGAT-GCTTTGGTGATGATATCTCCATGAACAAGGTAA-----TAATCTATTTTCCA-GAAGCCCTGGGCCATATTTTCCATAACACAATAGACACACACCTACTTTGATGAGCCATCTTGGC--------------TCTTCGGGAATTGTTACAGTGTCTGAATGTCAATCTAAAGTCAGGCTGGTGA-CTCATGTGCGTTATAGTTTCATACC---TCCTCAGA-GAC------TGTGAACAAGGGGAAAGTGACATCATTG-----GTGTGTCCTCCAGACTTTCAATCAGTCACGTGGCCCAGCCTTGGAGGATTGACTGACAGGTGAGCAATAGTTCTGATGATACAAACCATCAGGAGTTCATTCCA---AGGGAAATAGCAAAAGGCTAGAAAGAAAAGCATCCTTGCA-GACACTGGAACTGTTGCCT-GGCAACTAAACT---AACTCTC-TTTTCATTGGGTAACGACATGTCCAGGAAATGGCC-----------TTTGGTCAGCACTGTCCA-----GGTATATAAAGGGACCCGACCCAGAG-GAGACA-TCACACCTGAGAACTCCCAACCACTCTTCACCTCTCAGCCTCACTCCAGCC-CAGACACCACCATGA s canFam1.chr9 14282473 909 + 53642819 AAGACCATACTCAGGGAGGGGC--ATTCAAAAT-GCATAAT-ATGAATAAAGTTTTCACTTAGTTTGACTTTATTGTTCCATGAAAAG-CCTTCTCCTTCAATCACTTAATTTACCATTGTCTTGCCATCCTAACATTTGTAATTACCGTGTGATAAGAAACT-TCTTAGAACTTAATTTTCTTCCTTTCCCTCTTCACTCCCAAATAATGTGGTGCTGTTTATACAGTAAGAGTCTCAGAAGTGACTGTGATTTATAGGCCAACTATGG---TTACTAAAAA-ATATCACTCCAGCGGCTCTGGTAATTATTTCCTTATAAACAAGGTGAAGCACTATGTTGTTTTCCA-GAAGCACTGGGCAATTCTTCCCTTAGCAGTATCAGTACACGTCTCCTTCTATGAGTAATTTTGGCTTTTTTTTTTTTTTTTTTTAGAAATTCTTGCTTCATTTCAATGTCATTCAGAAACCAGGCCTGTGACCTCATGAAC-TTACAATCTCACACTTA-GTCATGGATGGTGAACAAGACGAACAAGAGGAAAGTATGATGGTAGCAACACTGGGATCGTCAAACTTTCAACTTGTCATGTGACATGGTCTGGAAGGGCTGGTTATTCCACGAGTAATTTTTTGGATGATATAAATCATCAAGTATTCATTTCAAGGAGGAAGAAAGCAGACAGGCAGAAAGGAAAGCATCCTTCCATGATGTTGGAGTTGCTGCTTCAGCAATTGAATCCACCAATCTAGAGGTCAATGGGCAACCACAACTCCAGGAAATGATCATGTGTCCTGGGGGGGTCATCAGCACCTGGGCAGGATATATAAAGGGCCCAAAGCAGGACAAAGACATTCACACCTGACAACACCCAAATCCTCTCACCAGTCCAA-ACCTAAACAGCCCCACATATCACCATGT a score=284306.0 s hg17.chr17_random 2500519 406 + 2618010 CCGGCTCCTGCTGCGGCTCCACCTTGTCCTCCCTGAGCTACGGGGGAGG---------------CTGCTGCCA----GC--CCTGCTGCTGCCGCGACCCCTGCTGCTGCCGCCCCGTGACCTGCCAGACCACCGTGTGCCGC----------CCCGTGACCTGCGTGC--CCCGCTGCACGCGCCCCATCTGCGAGCCCTGCCGCCGCCCGGTGTGCTGCGACCCCTGCTCCCTGCAGGAAGGCTGCTGCCGCCCCATCACCTGCTGCCCCTCGTCGTGCACGGCTGTGGTG----TGCAGGCCCTGCTGCTGGGCCACCACCTGCTGCCA-------GCCTGTGTCTGTGCAGTCCC--CCTGCTGCCGG---CCTCCCTGCGGCCAGCCGACCCCTTGCAGCACCACCTGCAGGACCTCCTC------------CTGCTGAGACCCCACCTCTCCTCTCAACGC s panTro1.chr19 42769324 406 - 82489036 CCGGCTCCTGCTGCGGCTCCACCTTCTCCTCCCTGAGCTACGGGGGAGG---------------CTGCTGCCA----GC--CCTGCTGCTGCCGCGACCCCTGCTGCTGCCGCCCCGTGACCTGCCAGACCACCGTGTGCCGC----------CCCGTGACCTGCGTGC--CCCGCTGCACGCGCCCCATCTGCGAGCCCTGCCGCCACGCGGTGTGCTGCGACCCCTGCTCCCTGCAGGAAGGCTGCTGCCGCCCCATCACCTGCTGCCCCTCGTCGTGCACGGCTGTGGTG----TGCAGGCCCTGCTGCTGGGCCACCACCTGCTGCCA-------GCCTGTGTCTGTGCAGTCCC--CCTGCTGCCGG---CCCCCCTGCGGCCAGCCGACCCCTTGCAGCACCACCTGCAGGACCTCCTC------------CTGCTGAGACCCCACCTCTCCCCTCAAGGC s mm5.chr11 22362955 402 - 121648857 CAGGCTCCTGCTGTGGAT---CCTTCTCCTCCCAGAGCTGTGGAGGAGG---------------CTGCTGCCA----GC--CCTGCTGCTGCAGGGACCCCTGCTGCTGCCGCCCAGTGTCCTGCCAGACCACAGTGTGTCGC----------CCTGTGACCTGTGTGC--CCCACTGCACCAGGCCCATCTGTGAGCCCTGCCGCCGCCCCATCTGCTGTGACCCCTGCAGCCTGCAGCAGGGCTGCTGTCGCCCCATCACCTGCTGCCCCACCTCTTGCACAGCTGTGGTC----TGCAGGCCTTGCTGCTGGGCCTCCACCTGCTGCCA-------GCCCATCTCAGTGCAGGCTC--CCTGCTGCAGG---CCCCCCTGCTGCCAGCCTGCTCCCTGTCGCACCACCTGCAGGACCTCCCCCTGTAACACCTGCTGCTGAGCCATCACAT------------- s rn3.chr10 22149283 399 - 110733352 CCGGCTCCTGCTGTGGAT---CCTTCTCCTCCCAGAGCTGT---GGAGG---------------TTGCTGCCA----GC--CCTGCTGCTGCAGGGACCCCTGCTGCTGCCGCCCAGTGTCCTGCCAGACCACTGTGTGTCGC----------CCTGTGACCTGTGTGC--CCCACTACACTAGGCCCATCTGTGAGCCCTGCCGCCGCCCCATCTGCTGTGACCCCTGCAGCCTGCAGCAGGGCTGCTGTCGCCCCATCACCTGCTGCCCCAGCTCTTGCACAGCTGTGGTC----TGCAGACCCTGCTGCTGGGCCTCCACCTGCTGCCA-------GCCCATCTCAGTGCAGGCTC--CCTGTTGCAGG---CCCCCCTGCTGCCAGCCTGCTCCCTGTCGCACCACCTGCAGGACCTCCCC------------CTGCAACACCTGCTGCTGAGCCCTCTAAT- s canFam1.chr9 14283382 411 + 53642819 CCGGCTCCTGCTGTGGTTCCATCTGTTCCTCCCAGGGCTGTGGCACAGAATGCTGCCAGCCCTCCTGCTGCCA----GC--CCTGCTGCTGCCGCGACCCCTGCTGCTGCCGCCCCGTGAGCTGCCAGACCACTGTGTGCCGC----------CCCGTGACCTGCACCT--GCCGCTGCACGCGCCCCATCTGTGAGCCCTGCCGCCGCCCTGTGTGCTGTGACCCCTGCTCCCTGCAGGAGGGCTGCTGCCGCCCCATCAGCTGCTGCCCCACGTCCTGCACTGCAGTGGTC----TGCCGCCCCTGCTGCTGGGCCTCCACCTGCTGCCA-------GCCCATCTCTGTGCAGGCGC--CCTGCTGCCGC---CCCTCCTGCTGCCAGCCTGCCCCCTGCCGCACCACCTGCAGGACCTCCCC---------CTGCTGCTGAACCGCCCATT------------- s fr1.chrUn 23789841 397 + 349519338 CCGCCTGTTGCCGAGGCCCCGCCTGTT---------GCCGAGGTGCCGC---------------CTGTAGCCGCGGTGCCGCCTGTTGCTGAGGCCCCGCCTGTTGCTGAGGCCCCGCCTGTTACCGAGGCACCGCCTGTTGCTGAGGCCCCGCCTGTTACCGAGGCACCGCCTGTTGCCGAGGTGCCGCCTGT-AGCCGCGGTGCCGCCTG--TTGCTGAGGCCCC---------------GCCTGTTGCCGAGGCCCCGCCTGTTGCC----GAGGTGC-CGCCTGTGGCCGCGGTGCCG--CCTGTTGCTGAGGCCCCGCCTGTTACCGAGGCACCGCCTGTTGCCG---AGGCACCGCCTGTTGCCGAGGCCCCTTCTGTTGCCGAGAACCCGCCTGTTG------CCGTGGTGCCGCCTG------------TTGCCAAGGCCCTGCCTGTTGTCGCGGTGC a score=73658.0 s hg17.chr17_random 2500925 261 + 2618010 ACGAAACATTCCCAGGTGCACAGAAGCTTGTGCAGACTCTTCTACCCCTTCTGGATCAGATGAGAGACTCCACCTTTGCAGCCTAGCTGATCCTCAAGCACGAATTCAACAATAACATCCTATCTATTTCCCCACATAATTATGCAGCTAATCCTGGCCCTCTCTGACAATCTTGAGAAAAATTCCAGCTTTCATCATTCGAATTCCTGGCTTG-AAAAAAAAAACGAGTAAATAAAAATCAAAGCTCCTCTTGAATAGAAC s panTro1.chr19 42769730 262 - 82489036 ACGAAACATTCCCAGGTGCACAGAAGCTTGTGCAGACTCTTCTACCCCTTCTGGATCAGATGAGAGACTCCGCCTTTGCAGCCTAGCTGATCCTCAAGCACGAATTCAACAATAACGTCCTATCTATTTCCCCACATAATTATGCAGCTAATCCTGGCCCTCTCTGACAATCTTGAGAAAAATTCCAGCTTTCATCATTCGAATTCCTGGCTTGAAAAAAAAAAACGAGTAAATAAAAATCAAAGCTCCTCTTGAATAGAAC s mm5.chr11 22363357 233 - 121648857 AGGCAGCTTCTCCGGGTGAACAGAA-CTCG---------TCCTACTCCTGATGGAGCA---GAGAGACACCACTTTTGCAGCCCATCTGTACTTCCCCAGTTCACCCAACCGTAAAGGCCTATCAAGTTCTCCATATATATATTCAGCTAGTC--------ATCTGCATAGCTCTAGACATATTCTAGCTCCCATCAGCAGAATTCTTGGC----ATCAAAAGCATATGTAAGCAAATGTTAAGTTTTTTCATGAAGA---- s rn3.chr10 22149682 173 - 110733352 AGGCAACTTTTCCAGGTG--------------------------------ATGGAGCAGAAGAGAGACACCACCTTTGCAACCCATCTGTTCTTCCACAAGTCACACAACTATAAAGACCTATCAAACTCCCCACACGTATATGCAGCTGGTC--------ATCTGCATAGCTCTAGACATATCCTAGCTCCCACCAGCAGAATTCTCG------AAGA------------------------------------------- s canFam1.chr9 14283793 255 + 53642819 GAGAAATATTCCCA-GTGTTCAGAAACATGCAAAAACACTTCCCACCCCAGAGGATCCTATGAGAGATACCTCCTTTGCAACTTACCTGCTCTTCAGTAACTAACTCAACAGTATCTGTCTATCCACTTTCCCACATAATTACCCAGTTAATATCGGCCTCTTCT-ATAACCTTTAGAAACATCCCAACTTTCATCATTTGAATTCCTGGCTTG-AAAA----AATGAGTGAACAAAGATCAAAATTCCTCTTGAATGGAGC a score=90994.0 s hg17.chr17_random 2501186 438 + 2618010 TCTGTCCCACTGACTCATCACCCTTTTTTCTACT--GTTTCAAGGTTCTCAGATGAGATTTTTTTCTTCCAGGATAATACTATTTGTATGCTGTATTTTTGCACTGtaaaaaaaaataaaattatatttCTGGGGAAGCAA--ACATTTCTTTTTATTTATTGTTTATTG---------CTCTTCAAAAGCTCATATTTAG----------CTTACATTACAGCATGCAGAACCAGAAGAACGAAAGGAGAGAT---------------------TTTCTAAGGGCCAT-TTTTGAGCTTT--------AGAATAGGAACAACTCAGGTGGAAGGTCTATAATTTTA-ATAGCATTTCAAATAAATCTGATCATCTCA--TGATTCACCTTCATATTTCGAGTCGCAGGTTTT-ATGGTGATGCTGACGAAATGGTGAG-ACTAC-AGTAGGTCTCTGTAAACATAAACTTGACTTATGAATAATTCACACACATGA s panTro1.chr19 42769992 440 - 82489036 TCTGTCCCACTGACTCATCACCCTTTTTTCTACT--GTTTCAAGGTTCTCAGATGAGATTTTTTTCTTCCAGGATAATACTACTTGTATGCTGTATTTTTGCACTGTAAAAAGAAATAAAATTATATTTCTGGGGAAGCAAACACATTTCTTTTTATTTATTGTTTATTG---------CTCTTCAAAAGCTCATATTTAG----------CTTACACTACAGCATGCAGAATCAGAAGAACGAAAGGAGAGAT---------------------TTTCTAAGGGCCAT-TTTTGAGCTTT--------AGAATAGGAACAACTCAGGTGGAAGGTCTATAATTTTA-ATAGCATTTCAAATAAATCTGATCATCTTG--TGATTCACCTTCATATTTCAAGTTGCAGGTTTT-ATGGTGATGCTGACGAAATGGTGAG-ACTAC-AGTAGGTCTCTGTAAACATAAACTTGACTTATGAATAATTCACACACATGA s mm5.chr11 22363590 433 - 121648857 TCCATCCCATTGAGTCACTGTAATTTTTTTTTTTTAATTTCAAGGT--TCAGATGGGATATGT---TTTCAGCATGG---TATCCTTGTGCTATGGTTTTGCATGATAAAAA-AAATAAAATTTTATTTTTGGTGAAGTAC--ACACATCCTTTT-TGTATTCTTTCTTG---------ATGTTTGAAACCTCAT-TGATG----------TGTAAATTACACTGTTCAGAATGGGATGTCTAGAAGGAGAAATG--------------------TTCCTAACAGCTGTATTTTGACCTTCCCTCCCCACCCCCAAGAGCCTTTGAGGTGCATGGTCCATGATGGTG-AAAAGAATTTGAACATTTCAGATCATCTCGC-CAATGGGCTTTCGTCTTTAAAGACACAGACTTCGGTGGTAACAGGACAAAAATAGTGAG-AC-------AGATCTTCG--ATCCTGAGTATGATTTGGGAGTGGTTCATACACACAA s rn3.chr10 22149855 426 - 110733352 TCAATCCTATTGAGTCACTGTAATTTTTTTTTTA--ATTTCAAGGT--TCACATAGGAACTAT---TTTCAGCATGG---TGTTTTTCTGCTGTGGTTTTGCATGATAAA---AAATAAAATTCTATTTCTGGCAAAGC----ACACATCCTTTT-TGTGTTCTTTCTTG---------ATGTTCAAAACCTCAT-TTATG----------TATAAATCGCCCTGTTTGGAATGGAAGGACTGGAAGGAAAATG---------------------TTCCTCCCAGCTATATTTTGACCTTT-CCCCCAGCTTCCAAGAGCATTTGAGGTGCGTGGTCCATACTGGTGCAAAGAAATTCAAACATGTCAGATCATCTCAC-CAACGGACTTTCATCTTTAAAGGCACAAACTTTGGTGGTAATGGGACAAAATTAGTGAG-GT-------AGATCTTTG--ATCTTGGATAGGACTTGGGATTGGTCCATACACACAA s canFam1.chr9 14284048 438 + 53642819 TCTATCCTGCTGACTCATCATCA-CATCTCTGCT--GTTACATGAC--------GGGACATTT---TTTGAGGATATCATTATATTTATGCTAGGTTTTTACATGGCaaaat-aataaaaattttatttCTGGTTATC-----AAAAATGTTTCTCTTTATTGTTTATTA---------ATCTTCAAAAGCTTATTTTTAG----------TTTATGGTATGATAGGCAGAATCAGAAAAACCAGAGAAAAAAGGATTTTTCAAGGGCCATTTTTTTTTCAAGGGCCAT-TTTTAAGCTTT-------------AGGAACAAATCAGGTTCAAGGTCTATAATTTTA-ATGGCAG-TCAAATAATGCAAAACATCTCATGTGAGGCACC-TCATAGTTCAAGCCATAGGTTTT-ATGGTAAAGTTGAGGAAATGGAGAG-ACTAC-AGCAGGTTTCTCTGAGCATGCACCTGACCCATGAACCATCCCCACACATGT s danRer1.chrUn 311856705 390 - 367113659 TCTGTTCCACTTG--CATCTTTAAGCATTTCATT---TTTTAAGACTAATGCTTGAAAGATTTTTACTCTGAAAAAGCACAATAATAATACAGTA------------------AAATA-------------------------GCAAACTAGTTTATATAATGTTTATTAACAAAAAACATGTTCACCTTCTCTGGTTTAAGAATTGGTCTTTTACCTTTCACC--TGAAAACCAGAATAGCAGAGAGAGAGAT---------------------TTTTGAGTAGTTTT-TTATAATATGA-------------AAAAAAAAAAAAGTCAACTAGTTAAAGTTATTA-GT---------AACTAATAAAGTTATCATAA-CTAATAACCTCAACATTTT----------TTTT-ATTTTTATAGCTATACAATAATGTGCACTTCTTATAAATCTGCTTTAAAACTAGAATTATTGTGTATTGTGTCACAAACTTGA a score=62909.0 s hg17.chr17_random 2501624 237 + 2618010 TAAGGGGGAGGAAGTCTAAGCTAAGTTATAGCCCTATTTGTTCACCAATGTAGGAAACTGTACGGTAATTGATGTCAAACAAGACCTGGGAATCCCTAGCCACTGAA--CATCCTATGCTGGAGGAACCACTATCCCATCTTCTCCATGG-TTCCCGTCAGCACCACCATGGCCAGTTCTACTTCCAGTGGAGTGGCTGCTGCTGAGAAGACAGGGAGAAATGAAGCCTTGGTTGTAATC s panTro1.chr19 42770432 237 - 82489036 TAAGGGGGAGGAAGTCTAAGTTAAGTTATAGCCCTATTTGTTCACCAATGTAGGAAACTGTACGGTAATTGATGTCAAACAGGACCTGGGAATCCCTAGCCACTGAA--CATCCTATGCTGGAGGAACCACTATCCCATCTTCTCCATGG-TTCCCGTCAGCACCACCACGGCCAGTTCTACTTCCAGTGGAGTGGCTGCTGCTGAGAAGACAGGGAGAAATGAAGCCTTGGTTGTAATC s mm5.chr11 22364023 212 - 121648857 GAAAAGGAACAAAGTC-----CGAGTTACAGCCCCGCTCGCTTCCCAACATAGAAAACTATGCCATGGTC-ATCTC-------ACCCAGAAACCCCTCATCACTGAGGTCTTCTTTAGCTCCTGGGTCAGTCTTTCTCTCATCTCC-------CCAGCCAGCACCACCACAG-CAGCTAGGTTTC---TGATGCAGCTGCTGATGAGAACA----GAATTATACAGCCTTTGCTAGAATC s rn3.chr10 22150281 218 - 110733352 GAAAAGGAAGAGCGCC-----CGTGTTACAGCCCTGCTTGCTTCCCAACATAGAAAGCTATGCCATGATC-ATACCACCTAGCACCCAGAAAACCCTCTCTACTGAG--TTCCTTTTATTTACTGAATCAGTCACTTATCTCCC---------CCAGCCAGCACCACCACAG-CAGTTAGGTTTC---CAAAGTGACTGCTGATGAGAGTA-ACAGAGTAACACAGCCTTTGTTAGAACC s canFam1.chr9 14284486 221 + 53642819 GAAAAAAGGAAAAGCC-----TAAGTTAGACCCGCGTTTATATCCTGATTTAGAAAACTGTGCTGCGATTAATAT-AATTGGTACCTGGGAATCCCGAACCACTGAA---GGCGTAGGCTGGAAGAACCACTATCATATCTTTTCCATGACTCTCCTCCCCCACCACTGTGG------CTGATTCTAATGGAGTCACTGCTGCTGGGAAAA---GGAGATTTGTAG-TTTGGCTGGAACC a score=9171.0 s hg17.chr17_random 2501861 61 + 2618010 ATCCTAGTTTTGAGCTCCGCATA--CATCTTAACCATTTAAACAACTGCAATGCGGTTGAAAT s panTro1.chr19 42770669 60 - 82489036 ATCCTAGTTTTGAGCTCCGCATA--CATCTT-ACCATTTAAACAACTGCAATGCGGTTGAAAT s canFam1.chr9 14284707 61 + 53642819 ATTCTAATTTAGAACCCCAAATGATTATTTT-ACCATTAAAACAATGCCAATAT-GTTGAAAT a score=22483.0 s hg17.chr17_random 2501922 111 + 2618010 GCTGATAACATTAATCCATACTGCATATATTTTTGATTTTGTTAAATACTTGTATGTTGGTAAGGAAGGCTAACCACTATCAT----TTTCCTGATAAATATCTTTTTAGTTCCT s panTro1.chr19 42770729 111 - 82489036 GCTGATAACATTAATCCATACTGCATATATTTTTGATTTTGTTAAATACTTGTATGTTGGTAAGGAAGGCTAACCACTATCAT----TTTCCTGATAAATATCTTTTTAGTTCCT s mm5.chr11 22364305 108 - 121648857 GGTGATTACATTAACCCTTTGTG-GGGCAGTTTCACTGTTGTCAGATAA------ACCAGTCAGGAAGGCTAACCACTGGTTTTGGGTTTATTTATTTATTTATTTATGGTTTCC s canFam1.chr9 14284768 109 + 53642819 AGTAA-AACACTAATCCACACTGGATATGATTTTGTGGTTGTTAAACATTTTTAAGCTGACTAGGAA-ACTAACTACTATTGT----TTTCCTGAGAAATATGCATTGAGTTCCC a score=19800.0 s hg17.chr17_random 2502033 107 + 2618010 AGCATGTGATAGAAAAGA----------------------------------------------------------GATTTCTTTGATTGTTCAGCATGTATTCCTGGGCATATCTACCTGCCCATTGAGAGAAGTGAGGCAAGGGAAGCTTTGTGAGGGCAGGG s panTro1.chr19 42770840 107 - 82489036 AGCATGTGATAGAAAAGA----------------------------------------------------------GGTTTCTTTGATTGTTCAGCATGTATTCCTGGGCATATCTACCTGCCCATTGAGAGAAGTGAAGCAAGGGAAGCTTTGTGAGGGCAGGG s mm5.chr11 22364660 163 - 121648857 AACAAGAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAGCAATGTAAAACTTTGTGTCTTTGGAACCAAATATAAGTGAATCTTTTAAAATGTGCTGCTTGTACGCTTAGCCCTACGCA-CTGATTAGTGAGAGAAGTCAAGTAA-GAAAGCTTTGTGAGGAGAGGG s canFam1.chr9 14284877 100 + 53642819 AACATATGCTCTAAAAGA-----------------------------------------------------------GTTTTTTGGAATGTGCTGCTTGTCTGCTTGGGC--ATCTACCTACCCAGAGAGAGGAGGCAGGCCAGgtaagctttgtgaaggg---- a score=-547.0 s hg17.chr17_random 2502140 2 + 2618010 GT- s panTro1.chr19 42770947 2 - 82489036 GT- s canFam1.chr9 14284977 2 + 53642819 -tt a score=89831.0 s hg17.chr17_random 2502142 961 + 2618010 CTTTAGTCtttttaatttaaatttatttcaagttcaggggtacatgtgcacgtttgttatataggtaaattgtgtgtcacagggttttggtatacagattatttcatcacccaggtaataagcatagtaacagatggccaggtgcagtggctcaagcctgaaatcccagcactttgggaggctgagatgggtaggtcacttgaggccaggaattcaagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaagtagctgggcatggtggcatgcgcctgtaatccaagctactcaggaggctgaatcaggagaatcgcttgaacctgggaggcagaggctttggtgagacaaggttgcgccactgcactcctgcctgggtgacagagtgagactctgtctcaaaacttaattaattaattaatttaattaaacaaaagcatagtaacagatagatggtttttttatcctcaccctcttcccaccatctgccctcaagtaagcttcagtatctgttgttcccttatttgtgtccatatgtactcaatgtttagctaccacttataagtgagaacatgccgtatttggttttctgtatctgtgttagtttgcttaggataatggcctccagcttcatccacattgctacaaaggacataatttccttttttatggctgtatagtattccatggtgtatgtgtaccacattttctttatccagtccacccttgatgggtatttaggttgattccatatctttgctactttgaacagtgctgcaataaacatatgcatgtatatgtctttatggtagaatgatttcaatccctctgggtccatacccactaatgggattgctgggttgaatggtaattctgttttaaatactttcagaaattgccaaactgctttccacaatggctgagctaatttacattgagggcca s panTro1.chr19 42770949 961 - 82489036 CTTTAGtctttttaatttaaatttatttcaagttcaggggtacatgtgcacgtttgttatataggtaaattgtgtgtcacagggttttggtatacagattatttcatcacccaggtaataagcatagtaacagatggccaggtgcagtggctcaagcctgaaatcccagcactttgggaggctgagatgggtaggtcacttgaggccaggaattcaagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaagtagctggacatggtggcatgtgcctgtaatccaagctactcaggaggctgaatcaggagaatcgcttgaacctgggaggcagaggctttggtgagacaaggttgcgccactgcactcctgcctgggtgacagagtgagactctgtctcaaaaattaattaattaattaatttaattaaacaaaagcatagtaacagatagatggtttttttatcctcaccctcttcccaccatctgccctcaagtaagcttcagtatctgttgttcccttatttgtgtccatatgtactcaatgtttagctaccacttataagtgagaacatgccgtatttggttttctgtatctgtgttagtttgcttaggataatggcctccagcttcatccacattgctacaaaggacataatttccttttttatggctgtatagtattccatggtgtatgtgtaccacattttctttatccagtccacccttgatgggtatttaggttgattccatatctttgctactttgaacagtgctgcaataaacatatgcatgtatatgtctttatggtagaatgatttctatccctctgggtccatacccaataatgggattgctgggttgaatggtaattctgttttaaatactttcagaaatcgccaaactgctttccacaatgactgagctaatttacattgagggcca a score=873.0 s hg17.chr17_random 2503103 3 + 2618010 gga s panTro1.chr19 42771910 3 - 82489036 gga s canFam1.chr9 14284979 3 + 53642819 gga a score=59734.0 s hg17.chr17_random 2503106 348 + 2618010 tctcgactaactttgttcactactagattcccactgatctgcacgatatttggcacattgagtataatcagaaatgatgtgttgaatga-taaatGAGTAAGTTCTAAGGGGATTGGTTAAAACAGAGAAAGACATTATCATTCC-ATCCCAACTCTCAACTCATGCTGGATATGCATATTCTTAAAATAAAAC-AATAAACCA-ATCATGAAGAAAGATCTTTTTTCTGGAAATATGGT--------AAAAGTTTCTCAACAAGAAGACTGTTATATTCAA-----------------AAACTTTA-----CATTTG---------CAGTACGTGCACAATGGAGTTTTATCTTTTTTAACGGTTT------------------------GGTAATTA---ACCAATGGA---TAGGCTC s panTro1.chr19 42771913 348 - 82489036 tctcaactaactttgttcactactagattcccactgatctgcacaatatttggcacattgagtataatcagaaatgatgtgttgaatga-taaatGAGTAAGTTCTAAGGGGATTGGTTAAAACAGAGAAAGACATTATCATTCC-ATCCCAACTCTCAACTCATGCTGGATATACATATTCTTAAAATAAAAC-AATAAACCA-ATCATGAAGAAAGATCTTTTTTCTGGAAATATGGT--------AAAAGTTTCTCAACAAGAAGACTGTTATATTCAA-----------------AACCTTTA-----CATTTG---------CAGTACGTGCACAATGGAGTTTTATCTTTTTTAACGGTTT------------------------GGTAATTA---ACCAATGGA---TAGGCTC s mm5.chr11 22364823 355 - 121648857 TCTGGGCTGGCTTCAGTCAAGACTGGATTTTTATTCATCTGCACGATACATGGCACATAGAAAATAAT---AAAT--TATATTGA------AAATAAGTAAGCGTTAAG----TAGGTGAGAGGAGAGGAAGACA----CATTCCTAGCCCCATTCTCCTTTC-----TGATATGTGTATTCTTA----------------------------------------TTCTGCTAAGCTGGCTTTCTCCACAAAGTGTTGCAACAAGAAG--TAATATGTACAGGGTGTTCTGTGGCTAGCAACTTTTAGGAACCATTTGATAAAAATTTAGTATGTGTACAATGGGTTGTTACTATTATCATTTGTTTATTACTATTGTTGTTATTATTGAGGGCAATTATTTCCCAGCAGGCCTTTGGTTT s canFam1.chr9 14284982 329 + 53642819 acttgattgactttgttcactgctggactcctactgatctgcaccatatttggcacataggatataatcagaa----tttggtgaatgagggaatGAATAAGTTCTACA-GCATTGG----AGGAGAGAGAAACATCTTTATCCC-TCACTGATTCTCTCCTCATGCTGGATATGTGCATTCTTACAATAAAATAAATTAGCCACCTCACGATGGAAAGCATTT-TTCTTGAAATATGGT--------AAAAACTTCTCAACAGGAAGTCCATTAGAATCAA-----------------AACATTTA-----CA--------------------TACACAATGGAGTTTTCTCTTTAGTAAGAGTTT------------------------AATGGTTT---ACT-GTAGA---CAGGATG a score=3584.0 s hg17.chr17_random 2503454 29 + 2618010 ACAAGTC--------------------------------------------------------------------------------------------------TAATTTCTTTCTATATATTCTT s panTro1.chr19 42772261 29 - 82489036 ACAAGTC--------------------------------------------------------------------------------------------------TAATTTCTTTCTATATATTCTT s mm5.chr11 22365178 127 - 121648857 ACAGATCCCATTTCTTTATATCATTCTCTCAGTGCTGGGGTTGGAGCCTTACAAACATTAAGCAAGAGTTCTATCACTGAGCTACATCCCTCTCTCTATATAAGTCAATCTCTTTCTACATATCTTT s rn3.chr10 22153456 29 - 110733352 ATAAGAC--------------------------------------------------------------------------------------------------AAGTCTCCTTCTATATATCTTT s canFam1.chr9 14285311 28 + 53642819 ACAAGTC--------------------------------------------------------------------------------------------------CAGTTTCTTTCTACATATTTT- a score=98810.0 s hg17.chr17_random 2503483 282 + 2618010 GATCACTGTTTTCAAA--ATTCGTTAAGTACATCTGTTTTTCTCCTCTCAGAGTTTTT-CTTGTTAGCCTTCTAGAGAC---CTCCTTATTTAAAAGTGTTTTCTCAAATGGACAA-TGCCTTGTTTCCCCTCAAACCTATCATTATTATTGGATCTCATTTATTCCCACAGTCACCCCATTCTCTGGTTGGCTGAAGTGGCTGGTGCAGATCTGGGTAAGCCTATAAGAAACCATGCAAGTGGTGTGATCAATAAGAATGCTTACACTTGAACCTTCAACTTCAGATC s panTro1.chr19 42772290 282 - 82489036 GATCACTGTTTTCAAA--ATTAGTTAAGTGCATCTGTTTTTCTCCTCTCAGAGTTTTT-CTTGTTAGCCTTCTAGAGAC---CTCCTTATTTAAAAGTGTTTTCTCAAATGGACAA-TGCCTTGTTTCCCCTCAAACCTATCATTATTATTGGATCTCATTTATTCCCACAGTCACCCCATTCTCTGGTTGGCTGAAGTGGCTGGTGCAGATCTGGGTAAGCCTATAAGAAACCATGCAAGTGGTGTGATCAATAAGAAGGCTTACACTTGAACCTTCAACTTCAGATC s mm5.chr11 22365888 282 - 121648857 GCTCACCATTTTAAAA-TAATCTCTAAACACCTCTGCTTTATTCCCCTCAGTACTTTT-AGTCTTAGACATATAGAAACTTTCTCTTTATCTTGCTGTGCTTTCTCAGACAGAAGA-TGTTGTGTTGTCTTCCACA-CTATCTTTATTATCA---TTCATTTGTCTCTGTGGTAACCCTGTGCCTGTGTCAACTACACTGGCTGCTAGCATGCTGAGTGACCCTGTAAGGAACTGTATAAGCAGCAGGACGGATGGCAAGGGGTAAACCAGAGCCTTCAACCACAGATC s rn3.chr10 22153485 284 - 110733352 GCTCACAACTTAAAAAATAACCTCTGAACACCTCTGCTTCACTCCCCTCAGTACTTTT-CTCCTTTGATTTGTAGAAACGTTCTTTTTATCTTGCTGGGCTTTCTCAGAGAGATAACCATCATGTTTTCTTCCA----TGTTATCATCACGGGAACTCGTTTGTTCCTGAGGTAACCCTGCACCTAGGACAGCTACTCTGACTGCTATCGAGCTGAGTGACCCTGTAAGCAACTGTGCAAGCGGCCGGACAGACGGGAAGGAGTGAACTGGAGCCTTGGAACACAGATC s canFam1.chr9 14285339 277 + 53642819 GAACACCATTTTAAAA--GTTCTCTAACTACAG----TTTTCTCCTCTCAGGATTTTTCCTTGTTAGCCTTCTAGGGAA---TTCCTTGTCTTAA--TATTTTCTCAGATGTAGAA-TTCTTTGTGTACTCCCAAGCTCATTGTTATTTTTGGATTGTGTTTGTTTCCACAGTAAATCCATGCCATGGTGAGCAACAGTGGTTGGTGTGATTCTGAGTAAACCTGCCAGAGGCTATGCAAGCAGAATGATCAGAAAGGAGGCTGACACCACAGTCCTCAGCCACAGATC a score=0.0 s hg17.chr17_random 2503765 80 + 2618010 TAttaggctggtgcaaaaataattgtagcttctgccattgaaagtgccaaaaaccacaattactttttgcaccaacctaa a score=-471.0 s hg17.chr17_random 2503765 2 + 2618010 TA s panTro1.chr19 42772572 2 - 82489036 TA s mm5.chr11 22366170 1 - 121648857 T- s rn3.chr10 22153769 2 - 110733352 TA a score=1912.0 s hg17.chr17_random 2503767 78 + 2618010 ttaggctggtgcaaaaataattgtagcttctgccattgaaag---tgccaaaaaccacaattactttttgcaccaacctaa s panTro1.chr19 42772574 81 - 82489036 ttaggctggtgcaaaaataattgtagcttttgccattgaaagtaatgccaaaaaccacaattactttttgcaccaacctaa s mm5.chr11 22366171 3 - 121648857 ---------------------------------------AAG--------------------------------------- a score=7268.0 s hg17.chr17_random 2503845 27 + 2618010 TAGAACAGTCTTAGTTGTAAAGGAAAA s panTro1.chr19 42772655 27 - 82489036 TAGAACAGTCTTAGTTGTAAAGGAAAA s mm5.chr11 22366174 21 - 121648857 ----GCAGAAATAATTGCAGAG--AAA s canFam1.chr9 14285616 27 + 53642819 TAGAACAGACTTAGTTATAAAGCAAAA a score=50516.0 s hg17.chr17_random 2503872 254 + 2618010 GGTCAGAACCAAGTAAATTAAGAGGCAAAGACTCAAAAGTGATTG---AGTGACATAATTTGCCTACAAGTCATGACAGTTTGAAACAATTAAAAATGACAATTGGTTCCATAAGCAGAAATGAGCCCCAGCATAGCACACAGGGAGATGTTGAAG--ACACTGAGGTATGGGCCAGATGAGGCCCGAGAACACGTTCAAGTGGGATCACTACTGAAGGGTTTTGTTATACCGCAAGACTGCAACCTTCCTCTACATAG s panTro1.chr19 42772682 254 - 82489036 GGTCAGAACCAAGTAAATTAAGAGGCAAAGACTCAAAAGTGATTG---AGTGACATAATTTGCCTACAAGTCATGACAGTTTGAAACAATTAAAAATGACAATTGGTTCCATAAGCAGAAATGAGCCCCAGCATAGCACACAGGGAGATGTTGAAG--ACACTGAGGTATGGGCCAGATGAGGCCCGAGAACACGTTCAAATGGGATCACTACTGAAGGGTTTTGTTATACCGCAAGACTGCAACCTTCCTCTACATAG s mm5.chr11 22366195 209 - 121648857 GGACAGACACAGG-------AGCTGTAAAATC-----------------ATGACCTAAGTTTTGCAGAAGGCCTGAGAGTTTGACGCAATTGAACATCACAGTTGGTTCTGTGGGTGGGAATGA-------------ACTTGAGGAGGTGTTGGAG--ATACT-AGATATAGACAAGGTAGA---CGAAGACTGCTTTGTATTGAA--ACTAGCTAGGACTATTCT----CCTCAGGGATGGAAGC-CCCTCTGGATAG s rn3.chr10 22153771 229 - 110733352 AACCAGAACTCACTGCAGAGAAAGG-ACAGACGCGAGAGCGATAAAATAATGACCTGTTTTG--TAGAAGGCCTGAGAGTTGGACACAACCAAGCGTTGCA---GATTCTGTGGGCGGGAATGA-------------ATTTCACGAGGTGTTGGCG--ATAAG-AGATATACACGAGATAGGAC-CTAAGACCGCTTTGTATTGAA--ACTAGCTAGGACTCTTCT----ACTAGGGGATGGAAGC-CTCCCTGGGTGA s canFam1.chr9 14285643 239 + 53642819 GGTCAGAACCAGC-------AAATCCAGAGTCTACAAAATGGCTG---TGTGAAATGATTTTCCT----------ACAGTCCCAAACAATTGAGAATCACAATTGGCTCTGTAAGCAGGAATATGCTCAAGCATAGTGCATGGGGAGACACTGGAGCAAGACAGAGGTATGGGCAAAGCAGGCCTGGAGACCACCTTTGGTGGGGATCACTACCTGGGAGCTCTGTTGTGCTGGCAGACTGCAGCCTTCATCTAGATGG a score=1464.0 s hg17.chr17_random 2504126 9 + 2618010 ACT-----TGTTTG s panTro1.chr19 42772936 9 - 82489036 ACT-----TGTTTG s mm5.chr11 22366404 14 - 121648857 GCTCAAGGTCTTTG s rn3.chr10 22154000 14 - 110733352 GTTCAGGGTCTTTG a score=206390.0 s hg17.chr17_random 2504135 618 + 2618010 ACTTCCTCACCATATTGGTGGCTTTGTTCACAATACCCCATAATCATTCAGTTATGCCCAACTATGACACTATCTCCTTAGGGTATGTTTCGACATTTTCAGAAGGCTGAA------TAGAAGGTAATTCTTCCCACTCCTGAGGCTG-TTGGTAAGACATAGAGTCCTTTCAACCGACTCTAAAAATTAGACATATCATAAATAACAACTGTTTTCAAAGTAAATACACTGTAAAAGCTCCTAAATAAAATAGACATTCCTTAATACCTGGGAATGTGGTACCTACAATCCATTCTTTAGCTACAGTGAGTTCTTCAGCTTTTTGGGCTGATAAATAATGTTCCCAcagatatttctggaatgagtattggctccaacacttactaggtacatgaccttgggta-agtcacttatctggttccttatgtgtgaaatgagaaata-aacaatatccacatcctaagaatgttatgaagattagattaatgcatgtattt--tttaatat-gatgcttggaacatagt---tacaacttaatgaTACTGGCTATCATGAAGAT----TACAGTGAAATTTACCTTGGTCTGGAAAGATACAACCATAGAAATCAATGAACATATCTCTAAGACAAAAA s panTro1.chr19 42772945 618 - 82489036 ACTTCCTCACCATATTGGTGGCTTTGTTCACAATACCCCATGATCATTCAGTTATGCCCAACTATGACACTATCTCCTTAGGGTATGTTTCGACATTTTCAGAAGGCTGAA------TAGAAGGTAATTCTTCCCATTCCTGAGGCTA-TTGGTAAGACATAGAGTCCTTTCAACCGACTCTAAAAATTAGACATATCATAAATAACAACTGTTTTCAAAGTAAATACACTGTAAAAGCTCCTAAATAAAATAGACATTCCTTAATACCTGGGAATGTGGTACCTACAATCCATTCTTTAGCTACAGTGAGTTCTTCAGCTTTTTGGGCTGATAAATAATGTTCCCACAGATATTTCTGAAATgagtattggctccaacacttactaggtacatgaccttgggta-agtcacttatctggttccttatgtgtgaaatgagaaata-aacaatatccacatcctaagaatgttatgaagattagattaatgcatgtattt--tttaatat-gatgcttggaacatagt---tacaacttaatgaTACTGGCTATCATGAAGAT----TACAGTGAAATTTACCTTGGTCTGGAAAGATACAACCATAGAAATCAATGAACATATCTCTAAGACAAAAA s mm5.chr11 22366418 585 - 121648857 ACTTCCTCACCTGTTTGGTGGCTTTGTTCAAAGTGTCCCATGACCGATTAACTATGCCCAATTGTGACACTCTGT-TTGGAGGCATGTTTTAGAATTTTGAGAATTCCCAAATTATGTGAGACTCAATTCTTCTAGTTCCTGGAGATACTTGGTAAG--AGAGAATGTGTACAGATGACTCTGAAG-------GTGTCACAAATAACAA---TTATAAAAGTATATACACCATTAAAATTCTTAAAGCAAAT----ACTCCATTAGACCTGGTCATGTGGTCCTCGTCATT------------------AATTCTGCAGCTCGTTGGACTTATGAACAATATCATGGCACATATTTGGGGACTGAGTATTGGCTGTAGCATTTACTA-ATGTTTGACATTGAGAA-AATCACTTACCGAGTCTGATATAGGGAAACCAAAAGATATCATAATCCTCACCTTGTAGGGAT-TTATTAAGAATAAATTAATACATGTATTTAGTTAAGCAT-GATGTTTG--ACACAGA---TAGCATTGAGCAATATTAA-----ATAAAAATAGTAAACAATGGAATTCCTTTTGTCTCAGAAAAGTAAGACCCTGAAAATCAGCGAATGTGTATCCAAGGCCA--- s rn3.chr10 22154014 548 - 110733352 ACTTCCTCACCCTTTTGGTGGCTTTGTTCAGAGGGTCCCATGACCGTTTAATTATGCCCAGTTGTGATGCTCTGC-TTGGAGGCATGTTTTAGAATCTTTAGAATTCCCAAATTATGTGGGACTCAATTCTTCTAGGTCCTGGGGATGTTTGCTAAG--AGAGACTGTGTGTGTATGACTCTGAAA-------ATGTCAGAAATAACTA---TCGCAAAAGTAAACACACCATTAAAATTCTTAAGGACAAT----GTTCCACAAGACCTGGTCACATGGTCCTCATCATT------------------AATTGTGCAGCTCGTTGGACTTACGAACAATATCATGGAGCATATTTGGGGGATGAGTATGGGCTGCAGCATTTGCTA-ATGTTTGACATTGAGAAGAACCACTTACCAAGTCT------------------GATG-----------------TAGGAAT-TTATAAAGAATAAACTAATACGCTTATTTAGTTAGGGGTCGATGTTTGAAACCACGT---------TCAGCAAGACTAA-----ATAGAGGTAGTGAACATTGGAATTCCCCTTGACTTAGAAAAGTAAGACCCTGAAAATCAGGGATTGTGTAACCAAGGCAA--- s canFam1.chr9 14286317 587 + 53642819 attctttcttctcATCAATGGCTTTGTTCATAGTGCCCTGTAACCCTTTAGTGATGTCCAACTTTGATGCTATCTCCTTAGGATATGTTTGGAA--TTTTAGAAAGCTTTG------TGGGAGATAATTATTTGAATTGTTGAGAATA-TTGGGAAG--ACAGAGTCCTTTCAGATAGCTCTAAAAATTAGACATTTTATGAATACCAACTATTTTAAAAATATATTCACTGTTAAAATTCCTACATAAAAG--ACATTCCTTAATGCCAGGGAATACAGTAACCACATTCCATT------------------CTTCAGCAACTTGGCCTTATGAATTATGTTCCCACAGATGTTTTTGCAATAagtcctggctccaacac-tagtaggcatatgaccttagaca-a-----------agtcatacatgtgtaaaatgaggaatc---caatacttacctcataggattattatgaagaataaattaatacatttatttcttttagcac-aatatttagaatacagttattagaagtcaatgatactagctatcatGAAGAT--TAAAAAATGAAATTCACCATGGTTTGGAAAACCACAACTATGGAAAATAATGAGCACATATTTAAGACcaaaa a score=998.0 s hg17.chr17_random 2504753 8 + 2618010 CCACTGGA s panTro1.chr19 42773563 8 - 82489036 CCACTGGA s mm5.chr11 22367003 4 - 121648857 ----TTGA s rn3.chr10 22154562 5 - 110733352 ---CTGAA a score=212703.0 s hg17.chr17_random 2504761 551 + 2618010 TGATGGAAACCTACTAAAATGCATTCTTGTACCTCCAAAAAGGGGACAGGAAAATTCTTCTTTTACTGAGAAATCCT----GACTTTTAAACTATCCCTGTA-----GTATTATCCTCAACTT-------------------GTTTTGCCC--------AGGAAGCTTAGCAGTGGCAAAGAATACTAACAACTTGAGATGCTCGCTTTACTTCAACTGCTAGCAAGTAATAACCCTCAGAGCATGCAGAGCACAACAGCTGCTTTGAGCTATCAAAACAGCAACTAGCAAAAGCGTCATTGAATTATAACGATAATTGGAGACTTTGAAGTTAGGGTCATTAAATTCATATTTGAACCATAAATAGCAAAATATAATGGGTCTACACTAAATAAGGA----AAATAGACTTTTATGTGTACCTGAGCATCTAAACAATGTCTACAAAACTTACTAATCTG-CTGGTGTTATTTCAGGAAGAATAAG--TGAAAACAAGGAAATGACCTTGTGTCC-T-GGGGG---TCATCAGCTCCCAGCCAGCGTATATAAAGGGCCCAGAGGGGGAGGAGGACATTCACACCTGAGAACATCCAG s panTro1.chr19 42773571 551 - 82489036 TGATGGAAACGTACTAAAATGCATTCTTGTACCTCCAAAAAGGGGACAGGAAAATTCTTCTTTTACTGAGAAATCCT----GACTTTTAAACTATCCCTGTA-----GTATTATCCTCAACTT-------------------GTTTTGCCC--------AGGAAGCTTAGCAGTGGCAAAGAATGCTAACAACTTGAGGTGCTCGCTTTACTTCAACTGCTAGCAAGTAATAACCCTCAGAGCATGCAGAGCACAGCAGCTGCTTTGAGCTATCAAAACAGCAACTAGCAAAAGCGTCATTGAATTATAACGATAATTGGAGACTTTGAAGTTAGGGTCATTAAATTCATATTTGAACCATAAATAGCAAAATATAATGGGTCTACACTAAATAAGGA----AAATAGACTTTTACGTGTACCTGAGCATCTAAACAATGTCTACAAAACTTACTAATCTG-CTGGTGTTATTTCAGGAAGAATAAG--TGAAAACAAGGAAATGACCTTGTGTCC-T-GGGGG---TCATCAGCTCCCAGCCACGGTATATAAAGGGCCCAGAGGGGGAGGAGGACATTCACACCTGAGAACACCCAG s mm5.chr11 22367007 496 - 121648857 AAATACAGGCCTGCTAGGGTGTGTTCCTGGAGCTCC--CGAGGAGATAGAAAA--------------------------------TTCGTATTAACTCTGT-------CAACACTCTTGCTTT-------------------GTTTTGTGC--------AGAGAGTTGAACAATGGAGAAGAA--ACAGCAAGATGATTTGCTGAATTCACTTCCACTGTGAGTAAGTAA----CCCCA--------ATGGCACAGGAGCTCTTTTGCGACATCAAAATACTACCTAGCAA-----------AACTATGAACGTAATTGGCGACTTTGAAGTTAGAGCCATTAAGTTCATATTTGAACCATAAATAGCAAGATATAATGAGCTGTCATTAAGTAAGGGACACAAATAATCTTTTACGAGGTCCTGAGCACTTGAAACACACCCAGAGAACTTACCAATCCA-CCAATGCCCTTCTAGAAGGGACAAA-CCCAAAACAAGGAAATTGTCCTCAGTCC-TGGGGGG---TCATCAGCACT--GCCCAGGTATATAAAGGGACCCAATCCAGAGGA-GACA-TCACACCTGAGAACTCCCAA s rn3.chr10 22154567 509 - 110733352 TG--GAAGGCCTACTAGGATGTGTCCCTGGAGCTCC-CGACGGAGACAGAAA------TTTCTTATTAACCCATTTTGACAGACTCTTAGA-------------------ACATTCTTGCTTT-------------------GTTTGGTCC--------AGAAAGTTGAACAGTGGAGAAGGA--ACTGCACTACTATTTGCTGAATTCACTTCCACTGTGAGTAATGAA----CCCCA--------ACGGCATGGGAGCTCTTTTGTGACATCGAAATGCCAACTGGCAA-----------AACTATGAAGGTATTTGGCGACTTTGAAGTTGAAGCTATTAAGTTCATATTTGAACCATAAATAGCAAAATGTAATGAGCTGCCATTACGTAAGGGACACAAATAACCTTTTATGAGGTCTCGAGCACTTAAAACAAGTCCAGAGAACTTACTAATCCA-CCAATGCCCTTCTAGAAGGAACAAACCCAAAAACAAGGAAATTGTCCTCTGTCC-T-GGGGG---TCATCAGCACT--GTCCAGGTATATAAAGGGACCCAGCCCAGAGGA-GACA-TCACACCTGAGAACTCCCAA s canFam1.chr9 14287749 574 + 53642819 TGCTGAGAAGATGATAAGGTGCATTCCTGTAGCTCCAAAAAGTACACAGCAAAACT--TATTTTCCTGAGAGACCAT----GACTTTTAAAATAGTCCCTTATTTTTTTTTTTTCCTAAACTTAAGCTTAGGGAAAGCTTAAGCTTCCTTCCCTAAGGAGGGAACCTTAGCAGTGGAAACAGATACTCACAACTTGGG-----GAATTTACTTCCACTATTAGTAAGTAA----CCCTA--------AGAGCATGACAGCTACTTTGTGCTATCAAAACATCAATTGGCAAAAACATCACTGAATTATGAAGATAATTGGAAACTTTGAAGTTAGGGTCATTAAATTCATATTTGAACCATAAATAGCAAAATATAATGGGTCTCTATTAAATAAGGAAAGCAAATGGTGTTTCATGAGTAGGTGAGCACCTAAAAAAATGTCGAGGAAATTGGTAGCCTATCTAGTGCCATTTCAGAAAGAATAAA-CAATAAACAAGGAAGTGATCATGTGTCCAT-GGGAGACATCATCAGCACCTGGGCAGGGTATATAAAGGGCCCAAAGCAGGACAAAGACATTCACACCTGACAACACCCAA a score=8077.0 s hg17.chr17_random 2505312 28 + 2618010 CTCCTCTCCACAGCCCAA-CCCACACCAG s panTro1.chr19 42774122 28 - 82489036 CTCCTCTCAACAGCCCAA-CCCACACCAG s mm5.chr11 22367503 29 - 121648857 CCTCTCTTCACTTCTCAGCCCCACTCCAG s rn3.chr10 22155076 29 - 110733352 CCACTCTTCACCTCTCAGCCTCACTCCAG s canFam1.chr9 14288323 28 + 53642819 ATCCTCTCACCAGTCCAA-ACCTAAACAG s fr1.chrUn 303306734 28 + 349519338 CTGCTCTTCACAATTTCA-TCCCAAGAGT a score=11780.0 s hg17.chr17_random 2505340 17 + 2618010 CCTCA-GACACCAC-CATG s panTro1.chr19 42774150 17 - 82489036 CCTCA-GACACCAC-CATG s mm5.chr11 22367532 16 - 121648857 CC-CA-GACACAAC-CATG s rn3.chr10 22155105 16 - 110733352 CC-CA-GACACCAC-CATG s canFam1.chr9 14288351 17 + 53642819 CCCCA-CATATCAC-CATG s fr1.chrUn 303306762 19 + 349519338 CCACAGGATACGACACATG s danRer1.chrUn 326869764 17 - 367113659 CCTGA-AATACCAT-CACC a score=241014.0 s hg17.chr17_random 2505357 331 + 2618010 ACCGGCTCCTGCTGCGGCTCC------ACCTTCTCCTCCCTGAGCTACGGGGGAGG---------------CTGCTGCCAGCCCTGCTGCTGCCGCGACCCCTGCTGCTGCCGCCCCGTGACCTGCCAGACCACCGTG--TGCCGCC-CCGTGACCTGCGTGCCCCGCTGCACGCGCCCCATCTGCGAGCCCTGCCGCCGCCCGGTGTGCTGCGACCCCTGCTCCCTGCAGGAAGGCTGCTGCCGCCCCATCACCTGCTGCCCCT-CGTCGTGCACGGCTGTGGTGTGCAGGCCCTGCTGCTGGGCCACCACCTGCTGCCAGCCTGTGT----CTGTGCAGTCCCC-CT---GCTGCCGGCCCC--- s panTro1.chr19 42774167 331 - 82489036 ACCGGCTCCTGCTGCGGCTCC------ACCTTCTCCTCCCTGAGCTATGGGGGAGG---------------CTGCTGCCAGCCCTGCTGCTGCCGCGACCCCTGCTGCTGCCGCCCCGTGACCTGCCAGACCACCGTG--TGCCGCC-CCGTGACCTGCGTGCCCCGCTGCACGCGCCCCATCTGCGAGCCCTGCCGCCGCCCGGTGTGCTGCGACCCCTGCTCCCTGCAGGAAGGCTGCTGCCGCCCCATCACCTGCTGCCCCT-CGTCGTGCACGGCTGTGGTGTGCAGGCCCTGCTGCTGGGCCACCACCTGCTGCCAGCCTGTGT----CTGTGCAGTCCCC-CT---GCTGCCGGCCCC--- s mm5.chr11 22367548 328 - 121648857 ACAGGCTCCTGCTGTGGAT---------CCTTCTCCTCCCAGAGCTGTGGAGGAGG---------------CTGCTGCCAGCCCTGCTGCTGCAGGGACCCCTGCTGCTGCCGCCCAGTGTCCTGCCAGACCACAGTG--TGTCGCC-CTGTAACCTGTGTGCCCCACTGCACCAGGCCCATCTGTGAGCCCTGCCGCCGCCCCATCTGCTGTGACCCCTGCAGCCTGCAGCAGGGCTGCTGTCGCCCCATCACCTGCTGCCCCA-CCTCTTGCACAGCTGTGGTCTGCAGGCCTTGCTGCTGGGCCTCCACCTGCTGCCAGCCCATCT----CAGTGCAGGCTCC-CT---GCTGCAGGCCCC--- s rn3.chr10 22155121 325 - 110733352 ACCGGCTCCTGCTGTGGAT---------CCTTCTCCTCCCAGAGCTGT---GGAGG---------------TTGCTGCCAGCCCTGCTGCTGCAGGGACCCCTGCTGCTGCCGCCCAGTGTCCTGCCAGACCACTGTG--TGTCGCC-CTGTGACCTGTGTGCCCCACTACACTAGGCCCATCTGTGAGCCCTGCCGCCGCCCCATCTGCTGTGACCCCTGCAGCCTGCAGCAGGGCTGCTGTCGCCCCATCACCTGCTGCCCCA-GCTCTTGCACAGCTGTGGTCTGCAGACCCTGCTGCTGGGCCTCCACCTGCTGCCAGCCCATCT----CAGTGCAGGCTCC-CT---GCTGCAGGCCCC--- s canFam1.chr9 14288368 346 + 53642819 TCAGGCTCCTGCTGTGGTTCC------ATCTGCTCCTCCCAGGGCTGTGGCACAGAATGCTGCCAGCCCTCCTGCTGCCAGCCCTGCTGCTGCCGCGACCCCTGCTGCTGTCGCCCCGTGAGCTGCCAGACCACCGTG--TGCCGCC-CCGTGACCTGCACCTGCCGCTGCACGCGCCCCATCTGTGAGCCCTGTCGCCGCCCTGTGTGCTGTGACCCCTGCTCCCTGCAGGAGGGCTGCTGCCGCCCCATCAGCTGCTGCCCCA-CGTCCTGCACTGCCGTGGTCTGCCGCCCCTGCTGCTGGGCCTCCACCTGCTGCCAGCCCATCT----CTGTGCAGGCGCC-CT---GCTGCCGCCCCT--- s fr1.chrUn 303307440 304 + 349519338 AGCTGCTGCTGCTGTAGCTACTGCTGTAGCTGCTGCTACTACTGCTGCTGCTGCTG---------------TAGCTGCTACTGCTGCTGCTGCTGTAGCTGCTGCTGCTGCAGCTGCTGCTGCTGCT--ACTGCTGTAGCTGCTGCTGCTG----CTGTAGCTGCTGCTGCTGCTGCTGTAGCTGCTACTACTGCTGCTGC------TGCTGTAGCTGCTGCTG-CTGTA-----GCTGCTGCTGATGTAGCTGCTGCTGC------------TGCTGCTGTAG-CTGCTACTACTGCTGCTG---CTGCTACTGCTG-TAGCTGCTGC----TGCTGTAGCTGCTGCT---GCTGTAGCT------ s danRer1.chrUn 326869781 306 - 367113659 -TGAGCCACCAGAATGGCC------------TCCACCACCTGAGTTACTGCCAGAG---------------CTGCCACCACCAGAGCTGTTACTACCAGAGCTGCCACCGCCACCTCCAGAGCTGCCAGACCCTCCAG--AGCTGCC----AGACCCGCCAGAGCTGCCAGACCCGCCAGAGCTGCCAGACCCGCCAGAGC------TGCCA-GACC--------CTCCAG------TGCTGCCAGATCCTCCAGCGCTGCCAGATCCTCCAGCGCTGCCAGATCCTCCAG----CGCTGCCAGACCGTCCAGTGCTGCCAGATCCTCTAGAGCTGC-CAGATCCT-CTAGAGCTGCAAGAGTCTAC a score=23564.0 s hg17.chr17_random 2505688 49 + 2618010 CCTGCGGCCAGCCGACCCCTTG----------CAGCACCACC---TGCAGGACCTCCTCCTG--- s panTro1.chr19 42774498 35 - 82489036 CCTGCGGCCAGCCGACCCCTTG----------CAGCACCACC---TGC----------------- s mm5.chr11 22367876 49 - 121648857 CTTGCTGCCAGCCTGCTCCCTG----------TCGCACCACC---TGCAGGACCTCCCCATG--- s rn3.chr10 22155446 49 - 110733352 CCTGCTGCCAGCCTGCTCCCTG----------TCGCACCACC---TGCAGGACCTCCCCCTG--- s canFam1.chr9 14288714 49 + 53642819 CCTGCTGCCAGCCTGCCCCCTG----------CCGCACCACC---TGTAGGACCTCCCCCTG--- s fr1.chrUn 23790402 40 + 349519338 CCTGTTGTC------------G----------CGGTGCCGCCTGTTGCCGAGGCCCCGCCTG--- s danRer1.chrUn 326870087 62 - 367113659 GCCGCAGCCAGAGTCTACGCCGGAGCCAGAGTCTACACCACA---GCCAGCGCCACAGCTGGACA a score=8326.0 s hg17.chr17_random 2505723 14 + 2618010 AGGACCTCCTCCTG---- s panTro1.chr19 42782055 14 - 82489036 AGGACCTACTCCTG---- s mm5.chr11 22367911 14 - 121648857 AGGACCTCCCCATG---- s rn3.chr10 22155481 14 - 110733352 AGGACCTCCCCCTG---- s canFam1.chr9 14288749 14 + 53642819 AGGACCTCCCCCTG---- s fr1.chrUn 23790431 11 + 349519338 ---GGCCCCGCCTG---- s danRer1.chrUn 326870135 14 - 367113659 ----GCCACAGCTGGACA a score=5300.0 s hg17.chr17_random 2505737 15 + 2618010 CTGAGCCACCACCTG s panTro1.chr19 42782069 15 - 82489036 CTGAGCCACCACCTG s mm5.chr11 22367925 9 - 121648857 ------CAACACCTG s rn3.chr10 22155495 9 - 110733352 ------CAACACCTG s fr1.chrUn 23790445 15 + 349519338 CCGAGGCCCCGCCTG s danRer1.chrUn 326870149 15 - 367113659 CGCAGCCAGAGTCGA a score=-4654.0 s hg17.chr17_random 2505737 18 + 2618010 ------CTGAGCCACCACCTGCTG s mm5.chr11 22367925 1 - 121648857 ------C----------------- s rn3.chr10 22155495 1 - 110733352 ------C----------------- s fr1.chrUn 23790445 18 + 349519338 ------CCGAGGCCCCGCCTGTTG s danRer1.chrUn 326870149 18 - 367113659 CGCAGCCAGAGTCGACGC------ a score=-562.0 s hg17.chr17_random 2505752 3 + 2618010 CTG- s mm5.chr11 22363340 3 - 121648857 CTG- s fr1.chrUn 23790460 3 + 349519338 TTG- s danRer1.chrUn 326870164 3 - 367113659 -CGC a score=-211.0 s hg17.chr17_random 2505752 3 + 2618010 CTG- s panTro1.chr19 42782084 3 - 82489036 CTG- s mm5.chr11 22363340 3 - 121648857 CTG- s fr1.chrUn 23790460 3 + 349519338 TTG- s danRer1.chrUn 326870164 3 - 367113659 -CGC a score=-117.0 s hg17.chr17_random 2505755 20 + 2618010 -CC-AGCCTGTGTCTGTGCAGT s panTro1.chr19 42782087 20 - 82489036 -CC-AGCCTGTGTCTGTGCAGT s mm5.chr11 22363343 21 - 121648857 -CTGAGCCATCACATAGGCAGC s canFam1.chr31 561865 20 - 41215879 -CA-AGCCTGTCTGCTGTGAGT s fr1.chrUn 23790463 20 + 349519338 -CC-GCCTTGTCTACCCGTGTT s danRer1.chrUn 326870167 21 - 367113659 CGC-AGCCAGAGTCGACGCTGT a score=-24105.0 s hg17.chr17_random 2505755 69 + 2618010 CC-AGCCTGT----------GTCTGTGCAGTCCCCCTGCGGCCAGCCGACCCCTTGCAGCACCACCTGCAGGACCTCCTC s panTro1.chr19 42774533 11 - 82489036 ---------------------------------------------------------------------AGGACCTACTC s mm5.chr11 22363343 51 - 121648857 CTGAGCCATC----------ACATAGGCAGCTTCTCCGGGTGAACAGAACTC-------------------GTCCTACTC s canFam1.chr31 561865 72 - 41215879 -CAAGCCTGT-------CTGCTGTGAGTCCTCCCCCTGCTGCCAGCAGTCTAGCTGCCAGCCCTCCTGCTGCAACTCCTC s fr1.chrUn 23790463 64 + 349519338 -CCGCCTTGT----------CTACCCGTGTTTTCTGAATAGACGGCAGATTT-----CCCATCATAAGCCAGCCCGTCGC s danRer1.chrUn 326870167 75 - 367113659 CGCAGCCAGAGTCGACGCTGTTACCTGAGCTCGCTGAATGGCCGCCGCCTCC-----TGAGCTTCCTGAATGGCCGCCGC a score=-78141.0 s hg17.chr17_random 2505755 145 + 2618010 -CCAGCCTGTGT--------CTGTGCAG--TCCCCCTGCGGCCAGCCGACCCCTTG-CAGCACCAC--CTGCAGGACCTCCTCCTG------------CTGAGCCACC--ACCTGCTGCCAGCCTGTGT-CTGTGCAGTCCCCCTGC---------------GGCCAGCCGACCCCTTGCAG------CACCACC s panTro1.chr19 42774533 102 - 82489036 ------------------------------------------------------------------------AGGACCTACTCCTG------------CTGAGCCACC--ACCTGCTGCCAGCCTGTGT-CTGTGCAGTCCCCCTGCTGCCGGCCCCCCTGCGGCCAGCCAACCCCTTGCAG------CACCACC s mm5.chr11 22367926 24 - 121648857 ------------------------------------------------------------------------AACACCTGCTGCTG----------------------------------------------------------------------------AGCCAACTGA----------------------- s rn3.chr10 22155496 24 - 110733352 ------------------------------------------------------------------------AACACCTGCTGCTG----------------------------------------------------------------------------AGCCAATCAG----------------------- s canFam1.chr31 561865 169 - 41215879 -CAAGCCTGTCT-------GCTGTGAGTCCTCCCCCTGCTGCCAGCAGTCTAGCTGCCAGCCCTCCTGCTGCAACTCCTCCCCCTGCCAGGAAGACAGCTGTGTGTCT--GTCTGCTGCAAGCCCGTGT-GCTGCACCCCTGTCTGC---------------TGCCAGGCCTCCCCCTGCTGCCAGCCCAGCCCC s fr1.chrUn 23790463 125 + 349519338 ------CCGCCTTG-----TCTACCCGTGTTTTCTGAATAGACGGCAGATTTCCCATCATAAGCC-------AGCCCGTCGCCCCT---------------------------TGAGACCAGGCTGGGGACTGAGCA-------------------------GTCCAGCTCGCCATCTGCCGTCGCACAACCGCC s danRer1.chrUn 326870167 142 - 367113659 CGCAGCCAGAGTCGACGCTGTTACCTGAGCTCGCTGAATGGCC-GCCGCCTCCTGAGCTTCCTGA-------ATGGCCGCCGCCTC------------CTGAGCTTCCTGAACGGCCGCCGCCTCCTGA-GCTTCCTGAACGGCCGC---------------CGCCTCCTGAGCTTCC----------------- a score=245.0 s hg17.chr17_random 2505783 14 + 2618010 -GGCCAGCCGACCCC s panTro1.chr19 42782025 14 - 82489036 -GGCCAGCCGACCCC s mm5.chr11 22363371 14 - 121648857 -GGTGAACAGAACTC s canFam1.chr31 561896 14 - 41215879 -TGCCAGCAGTCTAG s fr1.chrUn 23790491 14 + 349519338 -AGACGGCAGATTTC s danRer1.chrUn 326870201 14 - 367113659 TGAATGGCCGCCGC- a score=1503.0 s hg17.chr17_random 2505797 16 + 2618010 TTGCAGCACCACCTGC s panTro1.chr19 42782039 16 - 82489036 TTGCAGCACCACCTGC s canFam1.chr31 561910 16 - 41215879 CTGCCAGCCCTCCTGC s fr1.chrUn 23790505 11 + 349519338 -----CCATCATAAGC s danRer1.chrUn 326870215 16 - 367113659 CTCCTGAGCTTCCTGA a score=4818.0 s hg17.chr17_random 2505900 14 + 2618010 TGCAGGACCTCCTC s panTro1.chr19 42774635 14 - 82489036 TGCAGGACCTCCTC s canFam1.chr31 562034 14 - 41215879 TGCAGACCCTCTTC s fr1.chrUn 23790410 14 + 349519338 CGCGGTGCCGCCTG s danRer1.chrUn 326870309 14 - 367113659 TGAATGGCCGCCGC a score=-129.0 s hg17.chr17_random 2505914 15 + 2618010 CTGCTGAGCAGCCCG s panTro1.chr19 42774649 15 - 82489036 CTGCTGAGCAGCCCG s mm5.chr11 22367950 2 - 121648857 -------------CA s rn3.chr10 22155520 2 - 110733352 -------------CT s canFam1.chr9 14288763 15 + 53642819 CTGCTGAGAAGTATA s fr1.chrUn 23790424 15 + 349519338 TTGCCGAGGCCCCGC s danRer1.chrUn 326870323 15 - 367113659 CTCCTGAGCTTCCTG a score=15754.0 s hg17.chr17_random 2505929 115 + 2618010 TTATCACGAAGGGCCCCTCAGAAGATGGCCAGGTCCATCC-CGCTGCCCCTCAGGGCTTCACCGCAGAG-------------CAATACACGTTTCCTT----------------------------------------------------------------GAGAAGCCCATTTCTCATCTCTTCATACTAG s panTro1.chr19 42774664 115 - 82489036 TTATCACGAAGGGCCCCTCAGAAGATGGCCAGGTCCATCC-CGCTGCCCCTCAGGGCTTCACCGCAGAG-------------CAATACACGTTTCCTT----------------------------------------------------------------GAGAAGCCCATTTCTCATCTCTTCATACTAG s mm5.chr11 22367952 100 - 121648857 TTACCACTAAGGATCCCT-AGGTGATGGCTAGGTTCATCC-TGCTGTCACTCAGGACATGATTAT-------------------ATATATAATTTCTT----------------------------------------------------------------TAGTAGTCTAG--------TCTTCAAACTGT s rn3.chr10 22155522 183 - 110733352 TTACCAATAAAGATACCT-GGGAGATGGCCAGGTTCGTCC-AGCTGTCACTCAGGACATGATTAAATAATTTATATCTATATCTATATATCTTACCTTTGTGCTCAGAATATATATATACATATATATATGTGTGTATATGTATATATATATATATGAAGAAGAGAAGTCTAA--------TCTTCAACGTAT s canFam1.chr9 14288778 107 + 53642819 TCATCATTGAGGGTCGCT-AGTAGATGGTGAAGTCCATCCATCCTGCCCTTCAGGAC--------AGAA-------------AAGCATGACTTTTCCT----------------------------------------------------------------GAGAAGCCCATTTCCCGTTTCTTCAAACTAA s fr1.chrUn 23790439 101 + 349519338 CTGTTGCCGAGGCCCCGC-CTGTTGCCGCCTTGTCTACCC-----GTGTTTTCTGAATAGACGGCAGAT----------------------TTCCCAT----------------------------------------------------------------CATAAGCCAGCCCGTCGCCCCTTGAGACCAG a score=194266.0 s hg17.chr17_random 2506044 687 + 2618010 CTCACACTATGCATTGAAGACA---CCTTTTCAGACCAACCACAGAT-GAGAAATACTTTTCC----TAGGACTCCAGTCTAACTCCTATATCATGTTGTCTGCTTTCTAATAAACTCAATACTCCTACCATAGAAATCATGGTCTTTGTGATATTTTCTTCTGGGAGATTGTCTCTTTTTTTCT--------AGAGATAC----TCAAAGCAAGATGCAGAATAATCCTCTTATACAGTTCTC-------ATAACTTAAGTCTGAGTAGTTTTC-TTATAATCATTGTAAATGGCATTTATGGAGCACAG---CTGAGTCAGGAAGATGGATACAACTATGACTTTATCATGTGTACAGAGTCACTTGTGCCCAAAATTCCAGGCATGCATTGAACACCTGAGAAATGTTCTGCAACAAGAAACACGCTAGGAGGCCGCACC-------------------TGGGTTGAAACTTACATTCCCAGCCTAATGGTGTGTTTACTGATCCGACACCTGTTGGAACatcatagaa--cgcccagggtgttagaggtggaagaagccttaggcaacctctggccaattacctctgtttttgaagttaaagaaac-----ATGAATAATGTAAGAGTAAATAAGTTACTTACT-------AATGTAATTATAATCCCAAAAGTTCAGAAAAGAC--CCTGGAGAATACA-AGTTTCCTGCATTTAGACC-TCAGGTCAAACACTT---CTTAGTATGGTGAGA s panTro1.chr19 42774779 687 - 82489036 CTCACACTATGCATTGAAGACA---CCTTTTCAGACCAACCACAGAT-GAGAAATACTTTTCC----TAGGACTCCAGTCTAACTCCTATATCATGTTGTCTGCTTTCTAATAAACTCAATACTCCTACCATAGAAATCATGGTCTTTGTGATATTTTCTTCTGGGAGATTGTCTCTTTTTTTCT--------AGAGATAC----TCAAAGCAAGATGCAGAATAATCCTCTTATACAGTTCTC-------ATAACTTAAGTCTGAGTAGTTTTC-TTATAATCATTGTAAATGGCATTTATGGAGCACAG---CTGAGTCAGGAAGATGGATACAACTATGACTTTATCATGTGCACAGAGTCACTTGTGCCCAGAATTCCAGGCATGCATTGAACACCTGAGAAATGTTCTGCAACAAGAAACACGCTGGGAGGCCGCACC-------------------TGGGTTGAAACTTACATTCCCAGCCTAATGGTGTGTTTACTGATCCGACACCTGTTGGAACatcatagaa--cgcccagggtgttagaggtggaagaagccttaggcaacctctggccaattacctctgtttttgaagttaaagaaac-----atgagTAATGTAAGAGTAAATAAGTTACTTACT-------AATGTAATTATAATCCCAAAAGTTCAGAAAAGAC--CCTGGAGAATACA-AGTTTCCTGCATTTAGACC-TCAGGTCAAACACTT---CTTAGTATGGTGAGA s mm5.chr11 22368052 674 - 121648857 TTCAACCTATACATGGAAGATATCTTCTTTTAGGGCCCCTTTCTGAT-AGAGAACATTGTTCCCTCTTTATACTGTGATCTAAC-----CGTGGTATTGTCTGTTTTCTAATAAACTCAGCATTCTCAGCATAGATATCACGAGTGTTATGATGTTTTCCTTTGGTCTGTTGCTTCAATCACCAG--------AGAGGTTCTTTTTCAAGACAAGGTTCAGAATAACCTT------CAATTTTTCTGAAAAACAACTTATGTCTGAGTTGTTCTCTTTGGGCTCACTGCAAATGGCACATG--------------------ACGAGAATGGTGACAGTCA----GTCACCATCTGTTCA---TTACATAATCC--AAATTCCACCCTTAC--CAGCCAACTGAGAACCTGCCTGCATTGACCAGCCTGTTAGGAAGCAGTGTT-------------------CAGACAGCATC-TGCATGCCCAGTCTGGTAGCTTGTCACTTGAGCAGCTACCTGTTGGTACATCATGAAAATCTTCAAAGCT----GAGGTGGGAGAAACTCCAGGCTATGTCTGCTGAATCATCTCTGAGTTTGAAG-TAAAGAAATAGCTAATGGGTA----GAAAATACATTGGTTATTAATTGAGGTCAAATGTAATTATAGTTATAGGTGTCAATAAATTACCTCCCAGAGAGTAGAGAATTCCCCAAAATTCCACC-TTGAAGTCAACACTTGTGCTCCATATGGT---A s rn3.chr10 22155705 675 - 110733352 TTCAACCTATACACAGAAGACA---CCTATTTGGGCCCCTTTCTGAT--AAAAACATTGTTCCCTTTTTGGACTGTGATCTAGCTCTTCTGTGATATTGTCTGTTTTCTAATAAAC-----ATTCTCAGCATAGAAATCATGAGTGTTGTGATATTTTCCTTTG-------GTCTCAATCACCAA--------AGAGGTTCTTTTTCAGAACGAAGTTCAGAACGACCTT------AAATTGTTCTGAAAAGCAACTTAAGTCTGAGTTGTTCTC-TCGGGCTCGCTGCAAATGGCACATG--------------------ATGAGACTGGTGACA--------GTCGCCATCTGCTCA---TTACATAATCC--AAATTCCATCCTCGC--CAACCAACTGAGAACCTGCCTGCAGGGCCCAGCCTGACTAGACGCTGTGTCCAGGCAACATCTGCATGAACAGGCAACATC-TGTATGCCCAGTCCGGTGGCTTGTCGCTTGAGCAGACGCCTGTTGGTACATCATTCAAATCTGCCAAGCT----GAGGTAGGTGAAACCCCGAGCTACGTCTGCTGAATCGTCTGTGCTTTTGAAG-AAGAGAAAGGGTTAATGGGTG----GGAAATATATTGCTTATTAGTGGAGGTA-AAAATAATTATAGTTATAGGTGTCAATAAATTACTCCCCAGGGAATAGAGAATTCCCAA----TTCAGC-TTGAAGTCAACGCTTGAGCTCCGTGTGGTAAAA s canFam1.chr9 14288885 689 + 53642819 CTCAGAGTACGCATTGGGGCCC---CCTTTTCAGACCGACTACTGATGGGAGAGTACTCTGTCCTCTCAGGACCCCTGTCTAACTCCTCAATCATGTCTTCTGTTTTCTAATAAACTTAGTATTTCCAGCATAGAAATCGTGGTCTTTGTGATACTTCCTTTAAGTAGGTTTTCTCTCTCTCTTTTTTTGTTCAGACATAT----TCAAAGCAGGATGCAGAATAATTCTCTC---AAATTGTTCACTGAAATAACTTAGGTCTGGGTAATCTCA-TTG---TTCTTGTAAGGAGCATTTATAAGGCACAATATCCAAGTGAGAAAGGTAGGCATAGCTGTATCTTCACCACATATATAGAGTCACATGTGCTC-ACAATCCAGACATGC--CAAACATCTGAGAGATGTCCTTTAACAA-CACTCGGTAAGGAGGCTGCATC-------------------TAT---------TACATCCCTGGGCTCAAGTTTCATTCACTGAAT-GATACCTGTTAGTACAGCTTAGAA--AACCTAGTATGTTAGAGGTGGTAAGACCCTTAGGCAACATCTGGCAAAACAA----GTTTATGAAGTTGCAGAGCA-----ATGAGTAATGAAAGATTAAGTAAGTTTCCTAT--------AATATGATTATAATCACTGATGTTCAGAAAAGAC--CCAGGAGAACGTT-AGCCCCCTGACATTAAGCCTTTAAGTCAAACACTTCCTCTTAGTATGGTAGGA a score=1596.0 s hg17.chr17_random 2506731 8 + 2618010 GACATGTT s panTro1.chr19 42775466 8 - 82489036 GACATGTT s mm5.chr11 22368726 6 - 121648857 GAAATG-- s canFam1.chr9 14289574 8 + 53642819 GACACGTT a score=5053.0 s hg17.chr17_random 2506739 49 + 2618010 AATCACAAAATGGTTGTACATTCTA--CAACTTTATTTTACATTTCAATAG s panTro1.chr19 42775474 49 - 82489036 AATCACAAAATGGTTGCACATTCTA--CAACTTTATTTTACACTTCAATAG s mm5.chr11 22368732 43 - 121648857 -----AAAGAAGCTTGTTCATCCTGTCCAAGT---CCTTACATCTCCTTAG a score=3798.0 s hg17.chr17_random 2506788 21 + 2618010 CCACACACACACATATACACA s panTro1.chr19 42775523 21 - 82489036 CCACACACACACATATACACA s mm5.chr11 22370313 20 - 121648857 CCACACA-AAATATATTCACA a score=167986.0 s hg17.chr17_random 2506809 1825 + 2618010 CTTcctaggaatacatctagccaaggaagtgaaaaatctctacagagaaaactacagaacacgacttaaagaaatgataggtgacacaaacgaatggaaaaacatcccatgccaatggattggaagaatcagtatcattaaaatgaccacactgcccaaagcaatctacagattcaatgctatttctatcaagctaccaatgtcatttttcacagaactagaaaaaaactattctgaaattcataaggaaccaaaaagagcccaaatagccaaagcaatcgtaaataaaaagaaaactgaaggcatcacattacctgacttcaaactatgctataagactacagtaaacaaaacagcatggtactggtacaaaaacagaaagttgtaaaatataaagtggcatagacaaaaggaacagaatagagaacccagaaataaagccatgctcatacaacaatctaatctttgatatcattaacaaaaataagcaatgaggataggactccctattcaataagtggtgctgggatagctggctagctttatgcagatgattgaaactagaccctgactttcaccatatagaaaaattaactcaagatggattaaagatttaaatgtaagacctcaaactttaaaaaccctaggagaaaatctagaaaacataattcttaacatcaaccttgggaaagaatttatgactaagtcctcaaaagcaattgcaacaaacacaaaaattggcaagtgggacctaattaaactaaagagcttctgcacagtaaatgaaactatgaacacagtaaatagacaacctacagaatgagagaaaatattcacaaactgtgcatccaacaaaggcctaacatccagaatctataaggaacttaaacaattgaacaagcaaaaacaaataatcccattaaaaagtgggcaaaggacttgaacaatcacttctcaaaacaagacatacaagcagccaaacacacatgtgaaaaaatgctccacatcattattcatcaaagaaatgcaaaatcaaaaccacaatgagataccatcttacaccagtcaaaatggctattattaaaaagctcagtaactgaagccccatactttcagaataaagaaaaaaatagttaaaaaacaacagatgctgacaaggctgttgagaggagagaatgcttatatgctgttgatgggaatgtaaattagttcagctactatggaaagcagtgtggagatttctcaggaacttaaagtagaactatcatttgacccagcaatccctttacttggtctgtagccaaaagaaaacaaatcattctaccaaaaagacacatgcacttgcatgtttgtcacagtacaattcacaatagcaaagacatggaatcgacctaggttcccatcagtggtggactggatagagaaaatatggtacacatacaccatggaatactactcacccataaaaaacaatgaactcatgtccttcacagtaacatggatgcagctgggggccattatcctaaacaaattaacccaggaacagaaaaccaaatgccatattttctcactgacaaatgggagttaaacatcgggtactcattgacataatgatggcaacaatagacactggggactactagagcaggcagagcgggagggagacaagggctgaaaaactgttgggtgctacactcagtcctgggtgacaggatcgatcataccccaaacctcagcatcacacagtatacccacataacaaactggcacatcacacaatataccacctgaatctaaaggaaaagttgaaataatgaaaaaaaaa s panTro1.chr19 42775544 1825 - 82489036 CTTcctaggaatacatctaaccaaggaagtgaaaaatctctacagagaaaactacagaacacaacttaaagaaatgataggtgacacaaacgaatggaaaaacatcccatgccaatggattggaagaatcagtatcattaaaatgaccacactgccccaagcaatctacagattcaatgctatttctatcaagctaccaatgtcatttttcacagaactaggaaaaaactattctgaaattcatatggaaccaaaaagagcccaaatagccaaagcaatcctaaataaaaagaaaactgaaggcatcacattacctgacttcaaactatgctacaagactacagtaaacaaaacagcatggtactggtacaaaaacagaaagttttaaaatataaagtggcatagacaaaaggaacagaatagagaacccagaaataaagccatgctcatacaacaatctaatctttgataacattaacaaaaataagcaatgaggataggactccctattcaataagtggtgctgggatagctggctagctctatgcagatgattgaaactagaccctgactttcaccatatagaaaaattaactcaagatggattaaagatttaaatgtaagacctcaaactttaaaaaccctaggagaaaatctagaaaacatcattcttaacatcaaccttgggaaagaatttatgactaagtcctcaaaagcaattgcaacaaacacaaaaattggcaagtgggacctaattaaactaaagagcttctgcacagtaaatgaaactatgaacacagtaaatagacaacctacagattgagagaaaatattcacaaactgtgcatccaacaaaggtctaacatccagaatctataaggaacttaaacaattgaacaagcaaaaacaaataatcccattaaaaagtgggcaaaggacttgaacaatcacttctcaaaacaagacatacaagcagccaaacacacatatgaaaaaatgctccacatcattattcatcaaagaaatgcaaaatcaaaaccacaatgagataccatcttacaccagtcaaaatggctattattaaaaaactcagtaactgaagccccatactttcagaataaagaaaaaaatagtaaaaaaacaacagatgctgacaaggctgttgagaggagagaatgattatatgctgttgatgggaatgtaaattagttcagctactatggaaagcagtgtggagatttctcaggaacttaaagtagaactatcatttgacccagcaatccctttacttggtctgtagccaaaagaaaacaaatcattctaccaaaaagacacatgcacttgcatgtttgtcacagtacaattcacaatagcgaagacatggaatcgacctaggttcccatcagtggtggactggatagagaaaatatggtacacatacaccatggaatactactgacccataaaaaacaatgaactcatgtccttcacagtaacatggatgcagctgggggccattatcctaaacaaattaacccaggaacagaaaaccaaatgccatattttctcactgacaaatgggagttaaacatcaggtactcattgacataatgatggcaacaatagacactggggactactagagcagggagagcgggagggagacaagggctgaaaaactgttgggtgctacactcagtcctgggtgacaggatcaatcataccccaaacctcagcatcacacagtatacccacataacaaactggcacatcacaaaatataccacctgaatctaaaggaaaagttgaaataatgaaaaaaAGA a score=1965.0 s hg17.chr17_random 2508634 7 + 2618010 TTTGTTC s panTro1.chr19 42777369 7 - 82489036 TTTGTTC s canFam1.chr9 14291401 7 + 53642819 TTTGTTC a score=93624.0 s hg17.chr17_random 2508641 432 + 2618010 ATAATGTTATTGTTAAATGATAATGTGAAATAAAGCTCTGGAGTTTGTTACACAAAATCTGTTGTCCATCACCATGAGAAATCTGTCTAAATCAATTTGAAGGC-TTTTTTTTTTAAGGATGCTTCTCTAAGACCCCATTCTGTA-TTGCATGGGCTGTGGGGTTCTCAGTAGGGGTCTTGTTGCTATACACAGTCCTG---------ACAGATATGCCTTCTG-----TCAGTT---CAACAATAGCCTGACTCCCTT-CACAGAGGTAAGTGCTCAATGAGAAGGTGCTCTGTTTCTTCCTTCCAGGTGCTTTTATTTTATTTCATGCTATTAATGGAACTTACTACTGAATA---ATGTTATTTCATGTGTATTGTTTGGTGACTGAGCAGAGAACTAACCATTTGC-CATAACAAATATGTTGGTCTTTTTTCTAAACTTAAAGTTTAGAAT s panTro1.chr19 42777376 433 - 82489036 ATAATGTTATTGTTAAATGATAATGTGAAATAAAACTCTAGAGTTTGTTACACAAAATCTGTTGTACATCACCATGAGAAATCTGTCTAAATCAATTTGAAGGCTTTTTTTTTTTAAGGATGCTTCTCTAAGACCCCATTCTGTA-TTGCATGGGCTGTGGGGTTCTCAGTAGGGGTCTTGTTGTTATACACAGTCCTG---------ACAGATATGCCTTCTG-----TCAGTT---CAACAATAGCCTGACTCCCTT-CACAGAGGTAAGTGCTCAATGAGAAGGTGCTCTGTTTCTTCCTTCCAGGTGCTTTTATTTTATTTCATGCTATTAATGGAACTTACCACTGAATA---ATGTTATTTCATGTGTATTGTTTGGTGACTGAGCAGAGAACTAACCATTTGC-CATAACAAATATGTTGGTCTTTGTTCTAAACTTAAAGTTTAGAAT s mm5.chr11 22370333 364 - 121648857 ACAATGTTATTG----------------AATGGAGGTCTATGATTTGATAATCAAAATATATTACCCACCACTGCTAGGAAGCTTTCTAAATTCTTTACAAACC-TTTACAAAAAAAAAAAA-------AAGAC---------TG-TTGC-TGGGTGGTGGTGTTTGCAGTAA------------CACACACCGTCCAGGGCTCTGAAGCATACTTGGCCTCTGGCCTCTTCACT---CAGCAGGAGTCTAATTCCCCT--------GGAAATG-------------------GTTTCTTCTTTCTTGGTACATTAATTTTACTTTATGATATTAAGAAAACTCACCATTAAATATTCATCTTATTTGGTGGGCATCCTGTGGCGGCTG--------------CAGTGGCTCACATCACACATGCTGA-CTTTACTCTGAATTCAAATTTTAAAGT s canFam1.chr9 14291408 430 + 53642819 ATAATGCTATTGTTGAATGGTAGTGTTAAATAAAGCCCTACCATTAGTAATACAAAATATGTTGCCCATCACCCTCAGGAATCTGCCTGTATTACTTTTAAGTC-TTT-----TAAACGATGTTTTTCTAAGAGTTCACTCTGTGTTTGCATGGACTGTGGGGTTCTCAGTCGGGTTCAAGACACTATCCACAATTCCG---------ACACATATGCTTCTTG-----TAAATTCTGCAACAATAACCTAACTCCCCTTTCCAGAAACTAGTG-TTAAAAAGAGGGAGCTTCATATCTTCCTTCTAGGCATTTTTATTTTATGTCATGCTATTAATGAAACTCTCCAATAGATA---ATATTATTTAGAATATTTTCTGTGGTGACTGGGCAAACAGCTGGCCATTTGC-CATATCAGATATGTTCA-TCTAATTCTAAACTCAAAATTTAGAGT a score=7488.0 s hg17.chr17_random 2509073 39 + 2618010 TTAGAAAGTACCAATGTAACATGACCTTTTGCtatatat s panTro1.chr19 42777809 39 - 82489036 TTAGAAAGTACCAATGTAACATGACCTTTTGCtatatat s canFam1.chr9 14291838 39 + 53642819 TTATAAGGCACCCACATAACATGGCtttttaaaatatat a score=12867.0 s hg17.chr17_random 2509112 147 + 2618010 acatatggtatacatatagtaaatatatatagtatatgtaaaatacatatagtaaaatatatatacatatttgtatatatacatatatactatatatagtaaaatatatctagtatatctgtatatataaatatataatatattata s panTro1.chr19 42777848 147 - 82489036 acatatggtatacatatagtaaatatatatagtatatgtaaaatacatatagtaaaatatatatacatatttgtatatatacatatatactatatatagtaaaatacatatagtatatatgtatatataaatatgtaatatattata a score=11280.0 s hg17.chr17_random 2509260 160 + 2618010 tatatattttactatatataatatattatatatattttactatatataatatattatata---tttactatatataatatattatatatattttactatacataatatattatata---tttactatatataatatattatatatattttactatata--taatatat s panTro1.chr19 42777998 164 - 82489036 tatatattttac--tatataacatattatatatattttac--tatataacatattatatatattttactatatataacatattatatatattttactatatataacatattatatatattttactatatataatatattatatatattttactatatatgtaatatat a score=4116.0 s hg17.chr17_random 2509538 142 + 2618010 ttttactatatata-atatattatatatattttac-tatatataatatat------tatatatattttactatatataatatattatatatattttactatatata---atatattatatatattttactatatatataatatat---tatatata s panTro1.chr19 42777835 142 - 82489036 TTTTGCtatatatacatatggtatacatatagtaaatatatatagtatatgtaaaatacatata---------gtaaaatatat-atacatatttg--tatatatacatatatactatatatagtaaa--atacatatagtatatatgtatatata a score=129635.0 s hg17.chr17_random 2509699 1435 + 2618010 ttatatatattttactatatatataatatattatatatattttactatatataatatattatatatattttactatatatattatattatatatattttactatatatataatatattatatatattttactatatatgtaatatattatatatattttactatatatgtaatatatatgtaccatattatcggggaacctgccccgataatcacgtatgttcttttctattttcctaagcatcggctggcttgagaaataaagggacagagaacaaaagagagaaactttaaagctgggtgtccgggggagacatcacattttggtaggatccgtgatgccccacaagccacaaaaaccagcaagtttttattagggagtttcaaaaggggagagagtatacgaataggtgtgagtgacagacatcaagtacttaacagggtaatgcaatatcacaaggcaagtggaggcagggcgagatcagaggaccacaggaccgaggtgaaattaaaattgctaatgaagttttgggcaccactgtcattgataacatcttatcaggagacagggttttgagatcaaccggtctgaccaaaagttattaggtgggaatttcctcttcctaataagcctgggagcgctatgggagactggagtttatttcacctctgcaatctcgaccataagagacaggtacaccccgggggggccagttcagagacctacccctaggtgcgcattctctttctcagggacgttccacgctgagaaaaagaattcagcgatgtttctcccatttgcttttgaaagaagagaaatatggctctgttctgcccggctcaccagcggtcagagtttaagattatctctcttattccctgaacaattgctgttattctgttcttttttcagggtgcccacatttcatattgctcaaacagacatgctgtacaatttttgtagttaatgcaattattacagggtcctggaatgatatacatcctcctcaactgacaggattaagagattaaagtaaagacaggcataggaaatcacaagggtattgattggggaagtgataagtgtccatgaaatctttacaatttatgtttagagatttcagtaaagacaggcataagaaattacaaaagtattaatttgaggaactaataaatgtccataaaatcttcacaatccacgttcttctgtcatggcttcagtcagtccctccgtttggggttcctgacttcccgcaacaCCatatacatatatagtatacatacatatatactgtatacatatatactatacatattttactatatatgtaatacatatgtatatatacatatatactatatatattttactatatatatagtaaaaggtcatgttactatatatgtgtatatatgtgtgtatatatatatttact s panTro1.chr19 42777995 1425 - 82489036 ttatatatattttactatata----acatattatatatattttactatata--acatattatatatattttactatatataacatattatatatattttactatatata--acatattatatatattttactatatat--aatatattatatatattttactatatatgtaatatatatGTACCATATtatcgggggacctgccccgataatcacgtatgttcttttctattttcctaagcatcggctggcttgagaaataaagggacagagaacaaaagagagaaactttaaagctgggtgtccgggggagacatcacattttggtaggatccgtgatgccccacaagccacaaaaaccagcaagtttttattagggagtttcaaaacgggagggagtatacgaataggtgtgagtgacagacatcaagtacttaacagggtaatacaatatcacaaggcaagtggaggcagggcgagatcagaggaccacaggaccgaggcgaaattaaaattgctaatgaagttttgggcaccactgtcattgataacatcttatcaggagacaaggttttgagatcaaccggtctgaccaaaatttattaggtgggaatttcctcttcctaataagcctgggagcgctatgggagactggagtttatttcacctctgcaatctcgaccataagagacaggtacaccccgggggggccagttcagagacctacccctaggtgcgcattctctttctcagggacgttccacgctgagaaaaagaattcagtgatatttctcccatttgcttttgaaagaagagaaatatggctctgttctgcccggctcaccagcggtcagagtttaagattatctctcttattccctgaacaattgctgttattctgttcttttttcagggtgcccacatttcatattgctcaaacacacatgctgtacaatttttgtagttaatgcaattattacagggtcctggaatgatatacatcctcctcaactgacaggattaagagattaaagtaaagacaggcataggaaatcacaagggtattgattggggaagtgataagtgtccatgaaatctttacaatttatgtttagagatttcagtaaagacaggcataagaaattacgaaagtattaatttggggaactaataaatgtccataaaatcttcacaatccacgttcttctgtcatggcttcagtcggtccctccgtttggggttcctgacttcccgcaacaCCatatacatatatagtatacatacatatatactgtatacatatatactatacatattttactatatatgtaatacatatgtatatatacatatatactatatatattttactatatatatagtaaaaggtcatgttactatatatgtgtatatatgtgtgtatatatatatttact a score=80240.0 s hg17.chr17_random 2511134 618 + 2618010 atatatatatatatTTAACAAATACAAGACactaagtgccagacattgtttgttcttagcacttgacaaatattagctcatgtaatcct--tacaattctgatatgaactattattatggcccaaggacacacagccagtaagtggcagagctttaaatgagcattgtccagtttca--gaataagtgGGGTCAGAAAATAGGATGTGACTTGCCACCAAGTGTCAAACCGCAGAGCTGTCTGTGCTCTTACAACTCTGAGGCATGAATAACTGAAGCATGACCCATATTTTCTCTGCCTGAAAACGAAGTTTGGCTATGGGGTGTGGATAAGTGTCTTAGAGTGAATAAACA---CTAGAAAGGTTACTGAGTGATGCACAGATTATCTTTTTGGACCTTTATAAAGGGGAGACAGATCCTTATAAAGGGGAGAGACAGATCTTTATAAAGGGGAGAGACAGATCTCTTTAGAATGACCTTGGGTTTGAAGTTTCTGCAGTAGAGAAATGAGTCTTGTTAATGTGATGATTTAAGTCTTCCAAAGAGGCTCCCATTGCATAAAATGTG--ATTATCATGAAGACTCCACAGCAGCATGAAAATAAATTATGAGATAATATGTCTCG s panTro1.chr19 42779420 615 - 82489036 atatatatatat--TTAACAAATACAAGACactaagtgccagacattgtttgttcttagcacttgacaaatattagctcatgtaatcct--tacaattctgatatgatctattattatggcgcaaggacacacagccagtaagtggcagagctttaaatgagcattgtccagtttca--gaatAAGTGGGGTCAGAAAATAGGATGTGACTTGCCACCA-GTGTCAAACCGCAGAGCTGTCTGTGCTCTTACAACTCTGAGGCATGAATAACTGAAGCATGACCCATATTTTCTCTGCCTGAAAATGAAGTTTGGCTATGGGGTGTGGATAAGTGTCTTAGAGTGAATAAACA---CTAGAAAGGTTACTGAGTGATGCACAGATTATCTTTTTGGATCTTTATAAAGGGGAGACAGATCCTTATAAAGGGGAGAGACAGATCTTTATAAAGGGGAGAGACAGATCTCTTTAGAATGACCTTGGGTTTGAAGTTTCTGCAGTAGAGAAATGAGTCTTGTTAATGTGATGATTTAAGTCTTCCAAAGAGGCTCCCATTGCATAAAATGTG--ATTATCATGAAGACTCCACAGCAGCATGAAAATAAATTATGAGATAATATGTCTCG s rn3.chr10 22158489 550 - 110733352 ATACATTCACTCATCTAACAAAGATGAGACACTAAATGTCTGAC----TCTGCTCTCAGTGTTTCATGAGTATTAGCTCATTTAACCCTCGTGGAAACCAGATATGCACAATTA-TATGACACAAGGACACAAAGCCAGTGAGTGGCACAGCCTCATGTGAGTATTG---AGTGTTATTGGACACATGGTTTTGGAAAACAGCATCTGTCTTGCTGCCC-ATGCCAGAGCAAGCAGTTG-----GGTCCTCGAGCCCTGCATCATGGATAATGGGAACATGAACCATGTGCCC----------AATGAGGATGGGGTAGGAAGCCAGGATAAGTGTGCTACAAT-AACAAAAATGTCTGAAGAGTTTGCTGAGCCATCCTCAGACTCTCTCCTTG-------------------TAGATCGCTG------------------CTATATAAGAAGGAGAAA-AGATCACCGTGGAGTGA---TTGATGAGAAGTACACGCACCAGAAAAATCTGTGTTATAAAGTTGCTG--TTGTGTCTTTAGAGGAGACTCCCATTGCAAAGAGAGAGAAATAACCATG-AGATGCCATAGCAACATGAAATCTGGATAT----CAATGTGC---- a score=15074.0 s hg17.chr17_random 2511752 62 + 2618010 AAAAGAGCAGAATATACAACTTTTTACCTAGTTACCTCTGGTTACCACTTTGAAAAACAAAA s panTro1.chr19 42780035 62 - 82489036 AAAAGAGCAGAATATACAACTTTTTACCTAGTTACCTCTGGTTACCACTTTGAAAAACAAAA s rn3.chr10 22159039 43 - 110733352 ------ACTGAACATACAACTGTTTAT-------------ATTGCTGGTTTGAAAAGGAAGA s canFam1.chr9 14293069 59 + 53642819 AAAAGAGCAGAATATACAAGTTTTTATCTTGGT---TCTGGTTACTGCTTTTAAAAAAAAGT a score=23745.0 s hg17.chr17_random 2511814 127 + 2618010 ATCCCAC----GTCCGTAA-ACAAAGAAAAGAATGTAAAACAG--GAGAGTCAAAGGTCTCTAGCGATGAGATTGTGCCTGATATCTCCCTCTTCTGTTTCCCTAATTGTGACTACCGGGTCCAGTCAATTTAC s panTro1.chr19 42780097 127 - 82489036 ATCCCAC----GTCCATAA-ACAAAGAAAAGAATGTAAAACAG--GAGAGTCAAAGGTCTCTAGCGATGAGATTGTGCCTGATATCTCCCTCTTCTGTTTCCCTAATTGTGACTACCGGGTCCAGTCAATTTAC s rn3.chr10 22159305 121 - 110733352 AAGCCAC----ATNGNGAATACAAAGGGAAGATTTTAGAGCAT--GTGACGCA----CCTTTAGCCATAGACATAT-CTACATTTCTCCCTCCTCTATCTCTCTGG-TATAAC-AATATACTCAGTCAACTCAC s canFam1.chr9 14293128 128 + 53642819 ----CATGTGGGTCCCTGG-ATAAGAGATAGAACATGAAATATGAGAGAGTTGAAGGTCTTCATTGATGAGACCATGCTTCATTTCTCCCTCTTCTGTCTCCTCAGTTATGACTA-TACACTCAGTCAGTTTAC a score=41948.0 s hg17.chr17_random 2511941 208 + 2618010 ATTCCTCTTAAAGTTTTGAAATTATGCTTGAAATTCCATTTGGGGAGCTTTAGATGTCCGGCCCCAAGGCACATTCTTTCAAATAAAGAAAATGATCCCGAAGTGATTCAAAACCCTGTCTGGTGACTAACAGgaggagtaaagctggaaagtaatgggactgtttccc--ccatgtagttcctgaactgcccctggcaacacttcctga s panTro1.chr19 42780224 208 - 82489036 ATTCCTTTTAAAGTTTTGAAATTATGCTTGAAATTCCATTTGGGGAGCTTTAGATGTCCGGCCCCAAGGCACATTCTTTCAAATAAAGAAAATGATCCTGAAGTGATTCAAAATCCTGTCTGGTGACTAACAGgaggagtaaagctggaaagtaatgggactgtttccc--ctatgtagttcctgaactgcccctggcaacacttccTGA s canFam1.chr9 14293256 209 + 53642819 ATTCCTTTTAAACTTTTAAAATTATGTTTAAAATTCCATTTGGGGAGCTTTAGTTCCTGGGGCTTGAGGTACATTCTTTTGAATGATGGGAATGATCCTAAAGTGACTCAAAACCCTGCCTGGTGAATAATAAGAGG-GAAAAGCTGAAAAGTAACGAGACTTCTTCCCCACCATGCAATTCTCCAAGAGCCTCTGATGACCCTTCCCTA a score=5115.0 s hg17.chr17_random 2512149 152 + 2618010 agaagcgcatccatcacgcttttagcagtgccacagcagaaca-ctgggcagcctccca-atgcgtctacCCCTGAACAGTGTTCTGGATATGTGTGCAATGTTGGTTGAAAACCC-CTTTCTTGTCACTTGCTAATCAGAGCACCTATGTCAAA s canFam1.chr9 14293465 145 + 53642819 AGAAGCATGTCTACCACACTTCTAGCAGTACTGTCACAGAACAGCTATGCAGTCCCCTACATAAGTTT---TCTGATCAATGTATTGTCTACGTCAGCAATGCTGGTTGGAAACCCTCCATCTTGTCA-------GTCATAGTGCCCATGTCAAA a score=26262.0 s hg17.chr17_random 2512345 286 + 2618010 gcccaagctggagtgcaatggcatgatctcggctcactgcaacctccgcctttggggctcaagtgattctcgttccccagcctccggcacagctgggactacaggcac-tgccaccacacccagctaattttttgtattttattagagttgaggtttcaccatgttgcccagggtggtcttgaactcctgagctcaggtgatccacctgccttggcctccccaggtgttgggattacaggcatgagccactgcgcccggccAACAAGGTATATTCAGAAAAATTTCC s panTro1.chr19 42780628 287 - 82489036 gcccaagctggagtgcaatggcatgatctcggctcactgcaacctccgcctttggggctcaagtgattctcgttccccagcctccggcacagctgggactacaggcacctgccaccacacccagctaattttttgtattttattagagttgaggtttcaccatgttgcccagggtggtcttgaaatcctgagctcaggtgatccacctgccttggcctccccaagtgttgggattacaggcgtgagccactgtgcctggccAACAAGGTATATTCAGAAAAATTTCC a score=9458.0 s hg17.chr17_random 2512631 44 + 2618010 CATTACAGAATTCTTCATTACATGCACAAGAAAGGCAACGCTAA s panTro1.chr19 42780915 44 - 82489036 CATTACAGAATTCTTCATTACATGCACAAGAAAGGCAACGCTAA s canFam1.chr9 14293851 44 + 53642819 CATTACATGATTCTTTATCATATACACAAGAAAGGCAAATATAA a score=31646.0 s hg17.chr17_random 2512675 138 + 2618010 ---AAAATGACATGTTTCAGAGATAAAAATCAGCATCTTATGAC-AGAAAGACCAGAGTTGCACAGAACCTGAACTAGAGAAAAGAAAA-------CATGCAAGGCAGTCTTGGAGGTTTTATTCCAACACTTA-GTGGTTTGCAAAAAT s panTro1.chr19 42780959 139 - 82489036 ---AAAATGACATGTTTCAGAGATAAAAATCAGCATCTTATGACCAGAAAGACCAGAGTTGCACAGAACCTGAACTAGAGAAAAGAAAA-------CATGCAAGGCAGTCTTGGAGGTTTTATTCCAATACTTA-GTGGTTTGCAAAAAT s rn3.chr10 22160581 138 - 110733352 ---AAGAAAATAGGATTTAGAGAT-AAATTCAGTTCCCTATGACGAGAAGCATCAGTGATATGTGCACCATGAACTACAGAAAAGTATG--------ATGCTCAGTGACCTTAGATGATTTCATTTAATATAGACATACTTTATAAGAAT s canFam1.chr9 14293895 149 + 53642819 AAAAAAATGTCATGTCTCAGAGATAAAAATCAACATTCTGTAGCCAGAAGGACCACAGTTGCTCA-AGCCTGAACAGAAGAAAAGAAAAGAAAAACAATGGAGGGCAGCTGTGGATATTTTATTCCAATTCTTAGCTGTTTTACAAAAAT a score=50532.0 s hg17.chr17_random 2512813 312 + 2618010 TTTTGTCTGTCCTGTACAACTCTATGAGCTGCTATCCTATTCAAGGCCTATGTATCCCACTATATCAAGTGATAATCAAACGTATTCCCAAGCAG----ACTACGTGGGAGGGCTTGTCTAACACTCGTGTGATTCACGTTTCACATGTAGGTGCTTCCAAGGACTTGAGTCCCCTATTGGGGTC-AGGATAGGCTCTACTCAATGTTCTATGTACTTCTC--TATGTTTTTAAT--TTCTTTTAAAAACTG-AAGTTTTTTTAGACCGTTTTGTCCAGATTTGATC-CAGTG-TTATCTACTCAAAATAAGCATCAAGAGCTA s panTro1.chr19 42781098 310 - 82489036 TTTTGTCTGTCCTGTACAACTCCATGAGCTGCTATCCTATTCAAGGCCTATGTATCCCACTATATCAAGTGATAATCAAACGTATTCCCAAGCAG----ACTACATGAGAGGGCTTGTCTAACACTCGTGTGATTCACGTTTCA-ATGTAGGTGCTTCCAAGGACTTGAGTCCCCTATTGGGGTC-AGGATAGGCTCTACTCAGTGTTCTATGTACTTCTC--TATGTTTTTAAT--TTCTTTTAAAAACGG-AAGTTTTTT-AGACCGTTTTGTCCAGATTTGATC-CAGTG-TTATCTACTCAAAATAAGCATCAAGAGCTA s rn3.chr10 22160952 292 - 110733352 TTTTAATTTTTTTGTA------TTTGAACTGCTGTTCTAGCTAAGGAATTCGTATTCTCTTGTACCAAATGTTAAATAAATGTATTGTCAAAGAATCCCATTAAAT-AAAGAATGTTCCAAGTGCTTGTTTGGTTTAT-------AGACACCTGCTTCCA-------GAGTAGCC-ATTAAGG----GAGGAGAATCCAGTAGGTGATCTCTGTACCTGGTAGCATGTTATGTATGATTATGTTAAAAACTG-AGTTCTTTTGTGGCCATTTGATCCAGGTT--ATCTTAATG-TTGG-TAGTTGAAATGAG-ACCCAGAGATA s canFam1.chr9 14294048 296 + 53642819 TTTTATCTTTCCCAACAAGTTATCTGAGCTGCAGTCTTATTCAAGGTACATGCATTCCAT--TATCAAGTGATAGGTCAATAAAGTCCTAAGGAG----TCTACACCCAAGGACATGTCTAATACCTGTCTGATTCAC-------ATACAGGT-TTCTCA-------GGGCATCTCCTAAGAGTCAAATACAAGATCCAGTCAGTACTCTAGAAACCCC----TATATATTTGAT--TTATTTTAAAACTTGCAGTTCTTTTAGGATCATTTTCTCCAAGATTCATC-AGGTGCTTATCTACCCAAAATATGCATCAAGAGCTG a score=2244.0 s hg17.chr17_random 2513125 6 + 2618010 CTATCA s panTro1.chr19 42781408 6 - 82489036 CTATCA s mm5.chr11 22374199 6 - 121648857 CTATCA s rn3.chr10 22161244 6 - 110733352 GTAGAA s canFam1.chr9 14294344 6 + 53642819 CTCTCA a score=870.0 s hg17.chr17_random 2513131 6 + 2618010 CCTCAA s panTro1.chr19 42781414 6 - 82489036 CCTCAA s mm5.chr11 22374205 4 - 121648857 CCTC-- s canFam1.chr9 14294350 6 + 53642819 CCTAAA a score=94914.0 s hg17.chr17_random 2513137 243 + 2618010 ATGACGATGAGTTCTTAGATTTTCAC---------CCAATGTGAGTACATCCATACTTAGAGATAAAACAAGAGCTC-TTTAGTGA-GATAATGAGTGTGTCAC-----AAGCAACCA-TTAGTCAAAACAAAATTCTACTTAATTGGCCAAAAGGTAAACGAAAAGG---GTCACCTGCACCCGGCCAGGGTATATAAAGGGCCCAGAGGGGGAGGAGGACATTCACACCTGAGAACATCCAGCTCCTCTCCACAGCCCAA-C s panTro1.chr19 42781420 243 - 82489036 ATGACGATGAGTTCTTAGATTTTCAC---------CCAGTGTGAGTACATCCATACTTAGAGATAAAACAAGAGCTC-TTTAATGA-GATAATGAGTGTGTCAC-----AAGCAACCA-TTAGTCAAAACAAAATTCTACTTAATTGGCCAAAAGGTAAACGAAAAGG---GTCACCTGCACCCGGCCAGGGTATATAAAGGGCCCAGAGGGGGAGGAGGACATTCACACCCGAGAATACCCAGCTCCTCTCAACAGCCCAA-C s mm5.chr11 22374209 236 - 121648857 ATAGCTGTAATTTCCAAG-TTTCCACAATGAACAGTGAGTGTAAG-ATGTTCATATTTAGAGATGCAATGAGAATTA-CTTAATGAGGGCAATCAATG-----------ACTCAACCA-TTAGCCAAAGAGACATT-GGCTTAATTAGTCAAAAGATAAACAAGAGGT---GTCATCAGCAC-------AGGTATATAAAGGGACCCGACCCAGAGGA-GACA-TCACACCTGAGAACTCCCAACCTCTCTTCACTTCTCAGCC s rn3.chr10 22161311 240 - 110733352 ATGGCTGTAATTTTCAAG-TTTCCACAGTGAATAGTGGGTATAAG-ATGTTCATATTT--AGATGCAATGAGAATCATTTTAATGAGGGAAACCAATG-----------ACTCAACCA-TTAGTCAAACAGACATT-GGATTAATTAGTCAAAAGATAAACAAGAGGG---GTCATCAGCAC--TGTCCAGGTATATAAAGGGACCCGACCCAGAGGA-GACA-TCACACCTGAGAACTCCCCACCACTCTTCACCTCTCAGCC s canFam1.chr9 14294356 257 + 53642819 ATGACTGTGAGTGCTTAGATTTTGATGATGAACAGCATGTAT----ATATCCATATTTAGGAATGCAACAAGAGTTC-TTTAATGA-GATCATGAGTATGTCACAAGCAATGCAATCATTTAGTCAAAACAAAATCCTACTTAATTGGCCAAAAGATAAATGGGGGGGGGTGTCATCAGCACCTGGGCAGGATATATAAAGGGCCCAAAGCAGGACAAAGACATTCTCACCTGACAACATCCAAATCCTCTCACCAGTCCAA-A a score=15870.0 s hg17.chr17_random 2513380 30 + 2618010 CCACACCAGCCTCAGACACCACCATGACCG s panTro1.chr19 42781663 30 - 82489036 CCACACCAGCCTCAGACACCACCATGACCG s mm5.chr11 22374445 29 - 121648857 CCACTCCAGCC-CAGACACAACCATGACAG s rn3.chr10 22161551 29 - 110733352 TCACTCCAGCC-CAGACACCACCATGACCG s canFam1.chr9 14294613 30 + 53642819 CCTAAACAGCCCCACATATCACCATGTCCG s danRer1.chrUn 326870370 30 - 367113659 CCGCCGCCTCCTGAGCTTCCTGAACGGCCG a score=70214.0 s hg17.chr17_random 2513410 89 + 2618010 GCTCCTGCTGCGGCTC-----CACCTTCTCCTCCCTGAGCTACGGGGGAGGCTGCTGCCAGCC---------------CTGCTGCTGCCGCGACCCCT---GCTGCTGCCGC s panTro1.chr19 42781693 89 - 82489036 GCTCCTGCTGCGGCTC-----CACCTTCTCCTCCCTGAGCTATGGGGGAGGCTGCTGCCAGCC---------------CTGCTGCTGCCGCGACCCCT---GCTGTTGCCGC s mm5.chr11 22374474 86 - 121648857 GCTCCTGCTGTGGAT--------CCTTCTCCTCCCAGAGCTGTGGAGGAGGCTGCTGCCAGCC---------------CTGCTGCTGCAGGGACCCCT---GCTGCTGCCGC s rn3.chr10 22161580 83 - 110733352 GCTCCTGCTGTGGAT--------CCTTCTCCTCCCAGAGCTGT---GGAGGTTGCTGCCAGCC---------------CTGCTGCTGCAGGGACCCCT---GCTGCTGCCGC s canFam1.chr9 14294643 89 + 53642819 GCTCCTGCTGTGGTTC-----CATCTGCTCCTCCCAGGGCTGTGGCACAGAATGCTGCCAGCC---------------CTGCTGCTGCCGCGACCCCT---GCTGCTGTCGC s fr1.chrUn 303307744 89 + 349519338 GCTGCTGCTGTAGCTG-----CTGCTGCTACTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTG---------------CTGTAGCTGCTACTACTGCT---GCTGCTGCTGT s danRer1.chrUn 326870400 112 - 367113659 CCACCTCCTGAGCTTCCTGAACGGCCGCCGCCGCCTGAACTCCCTGAACGGCCGCCGCCGCCTGAACTCCCTGAACGGCCGCCGCCGCCTGAACTCCCTGAACGGCCGCCGC a score=3178.0 s hg17.chr17_random 2513499 6 + 2618010 --CCCGTG s panTro1.chr19 42781782 6 - 82489036 --CCCGTG s mm5.chr11 22374560 6 - 121648857 --CCAGTG s rn3.chr10 22161663 6 - 110733352 --CCAGTG s canFam1.chr9 14294732 6 + 53642819 --CCCGTG s danRer1.chrUn 326870512 6 - 367113659 CGCCTG-- a score=211786.0 s hg17.chr17_random 2513505 281 + 2618010 -ACCTGCCAGACCACCGTGTGCCGC----------CCCGTGACCTGCGTGC--CCCGCTGCACGCGCCCCATCTGCGAGCCCTGCCGCCGCCCGGTGTGCT------GCGACCCCTGCTCCCTG------CAGGAAGGCTGCTGCCGCC----------------CCATCACCT-----GCTGCCCCTCGTCGTGCACGGCTGTGGTG----TGCAGGCCCTGCTGCTGGGCCACCACCTGCTGCCA-------GCCTGTGTCTGTGCAGTCCC--CCTGCTGCCGG---CCCCCCTGCGGC------C---AGCCGACCCCTTGCA---GCACCAC-CTGC-----AGGACCTCCTCCTG s panTro1.chr19 42781788 281 - 82489036 -ACCTGCCAGACCACCGTGTGCCGC----------CCCGTGACCTGCGTGC--CCCGCTGCACGCGCCCCATCTGCGAGCCCTGCCGCCGCCCGGTGTGCT------GCGACCCCTGCTCCCTG------CAGGAAGGCTGCTGCCGCC----------------CCATCACCT-----GCTGCCCCTCGTCGTGCACGGCTGTGGTG----TGCAGGCCCTGCTGCTGGGCCACCACCTGCTGCCA-------GCCTGTGTCTGTGCAGTCCC--CCTGCTGCCGG---CCCCCCTGCGGC------C---AGCCGACCCCTTGCA---GCACCAC-CTGC-----AGGACCTACTCCTG s mm5.chr11 22374566 281 - 121648857 -TCCTGCCAGACCACAGTGTGTCGC----------CCTGTGACCTGTGTGC--CCCATTGCACCAGGCCCATCTGTGAGCCCTGTCGCCGCCCCATCTGCT------GTGACCCCTGCAGCCTG------CAGCAGGGCTGCTGTCGCC----------------CCATCACCT-----GCTGCCCCACCTCTTGCACAGCTGTGGTC----TGCAGGCCTTGCTGCTGGGCCTCCACCTGCTGCCA-------GCCCATCTCAGTGCAGGCTC--CCTGCTGCAGG---CCCCCTTGCTGC------C---AGCCTGCTCCCTGTC---GCACCAC-CTGC-----AGGACTTCCCCATG s rn3.chr10 22161669 281 - 110733352 -TCCTGCCAGACCACTGTGTGTCGC----------CCTGTGACCTGTGTGC--CCCACTACACTAGGCCCATCTGTGAGCCCTGCCGCCGCCCCATCTGCT------GTGACCCCTGCAGCCTG------CAGCAGGGCTGCTGTCGCC----------------CCATCACCT-----GCTGCCCCAGCTCTTGCACAGCTGTGGTC----TGCAGACCCTGCTGCTGGGCCTCCACCTGCTGCCA-------GCCCATCTCAGTGCAGGCTC--CCTGCTGCAGG---CCCCCCTGCTGC------C---AGCCTGCTCCCTGTC---GCACCAC-CTGC-----AGGACCTCCCCCTG s canFam1.chr9 14294738 281 + 53642819 -AGCTGCCAGACCACCGTGTGCCGC----------CCCGTGACCTGCACCT--GCCGCTGCACGCGCCCCATCTGTGAGCCCTGCCGCCGCCCTGTGTGCT------GTGACCCCTGCTCCCTG------CAGGAGGGCTGCTGCCGCC----------------CCATCAGCT-----GCTGCCCCACGTCCTGCACTGCCGTGGTC----TGCCGCCCCTGCTGCTGGGCCTCCACCTGCTGCCA-------GCCCATCTCTGTGCAGGCGC--CCTGCTGCCGC---CCCTCCTGCTGC------C---AGCCTGCCCCCTGCC---GCACCAC-CTGC-----AGGACCTCCCCCTG s fr1.chrUn 23789936 292 + 349519338 -TGTTACCGAGGCACCGCCTGTTGCTGAGGCCCCGCCTGTTACCGAGGCACCGCCTGTTGCCGAGGTGCCGCCTGT-AGCCGCGGTGCCGCCTG--TTGCT------GAGGCCCC---------------------GCCTGTTGCCGAG----------------GCCCCGCCT-----GTTGCC----GAGGTGC-CGCCTGTGGCCGCGGTGCCG--CCTGTTGCTGAGGCCCCGCCTGTTACCGAGGCACCGCCTGTTGCCG---AGGCACCGCCTGTTGCCGAGGCCCCTTCTGTTGC------CGAGAACCCGCCTGTTGCCGTGGTGCCGC-CTGTTGCCAAGGCCCTGCCTGTT s danRer1.chrUn 326870518 303 - 367113659 AACTCCCTGAACGACC----GCCGC----------CGCCTGAACTCCCTGA--ACGGCCGCCGCCGCCTGAACTCCCTGAACGGCCGCCGCCGCCTGAACTCCCTGAACGGCCGCCGCCGCCTGAACTCCCTGAACGGCCGCCGTCGCCTGAACTACCTGAACGGCCACCGCCTCCTAAGCTTCCTCAATGGTCGCAGCCTCATGATC----CAGGGCCACTGCAGCT------CCAC--GCTCCAG-------GCCCTCCGCAG------CTC--CACGCTCCAGG---CCCTCC-GCAGCTCCACGC---TCCAGGCCCTCCGCA---GCTCCACGCTCC-----AGGCCCTCCGCAGC a score=-3154.0 s hg17.chr17_random 2513786 81 + 2618010 --------CTGAGCCACCACCTGCTG----CCAGCCTGTGTCTGTGCAGTCCC-CCTGCGGC----CAGCCGACCCCTT------GCAGCACCAC-CTG------CAGGAC s fr1.chrUn 23790232 96 + 349519338 --------CGGTGCTGCCTGTTGCTGAGGCCCTGCCTGTTGCTGAG--GCCCCGCCTGTTAC----CGAGGCACCGCCTGTTGCCGCGGTGCCGC-CTGTCGCCACGGTGC s danRer1.chrUn 326870821 87 - 367113659 TCCACGCTCCAGGCCCTCCGCAGCTC----CACGCTC---------CAGGCCC-TCCGCAGCTCCACGCTCCAGGCCCT----CCGCAGCTCCACGCTC------CAGGCC a score=-806.0 s hg17.chr17_random 2513786 3 + 2618010 -CTG s panTro1.chr19 42782069 3 - 82489036 -CTG s fr1.chrUn 23790229 3 + 349519338 -TCG s danRer1.chrUn 326870821 3 - 367113659 TCC- a score=-1968.0 s hg17.chr17_random 2513789 12 + 2618010 ---AGCCACCACCTG s panTro1.chr19 42782072 12 - 82489036 ---AGCCACCACCTG s mm5.chr11 22374847 9 - 121648857 ------CAACACCTG s rn3.chr10 22161950 9 - 110733352 ------CAACACCTG s canFam1.chrUn 24523589 12 + 91062872 ---TGCGTCTGTCTG s fr1.chrUn 23790232 12 + 349519338 ---CGGTGCTGCCTG s danRer1.chrUn 326870824 14 - 367113659 ACGCTCCAGGCCCT- a score=-3966.0 s hg17.chr17_random 2513801 66 + 2618010 CTGCCAGCCTG-------------TGTCTG-TGCAGTCCC-CCTGCGG--CC-AGCCGAC--CCCT--TGCAG------CACCAC-CTG------CAGGAC s canFam1.chrUn 24523601 89 + 91062872 CTGCAAGCCCATCTGCTGCACCCCTGTCTGCTGCACCCCCGTCTGCTG--CC-AGGCCTC--CCCTGCTGCTGCCAGCCCAGCCC-CTG------CAGACC s fr1.chrUn 23790247 81 + 349519338 CTGAGGCCCTG-----------CCTGT-TGCTGAGGCCCCGCCTGTTA--CCGAGGCACC--GCCTGTTGCCGCGG---TGCCGC-CTGTCGCCACGGTGC s danRer1.chrUn 326870838 70 - 367113659 CCGCAGCTCCA-----------------CGCTCCAGGCCC-TCCGCAGCTCC-ACGCTCCAGGCCCTCCGCAG------CTCCACGCTC------CAGGCC a score=-488.0 s hg17.chr17_random 2513801 23 + 2618010 CTGCC-AGCCTG-------------TGTCTG-TGCAGT s panTro1.chr19 42782084 23 - 82489036 CTGCC-AGCCTG-------------TGTCTG-TGCAGT s canFam1.chrUn 24523601 37 + 91062872 CTGCA-AGCCCATCTGCTGCACCCCTGTCTGCTGCACC s fr1.chrUn 23790244 25 + 349519338 TTGCTGAGGCCC-------------TGCCTGTTGCTGA s danRer1.chrUn 326870838 20 - 367113659 CCGCA-GCTCCA-------------CGC----TCCAGG a score=-3966.0 s hg17.chr17_random 2513801 66 + 2618010 CTGCCAGCCTG-------------TGTCTG-TGCAGTCCC-CCTGCGG--CC-AGCCGAC--CCCT--TGCAG------CACCAC-CTG------CAGGAC s canFam1.chrUn 24523601 89 + 91062872 CTGCAAGCCCATCTGCTGCACCCCTGTCTGCTGCACCCCCGTCTGCTG--CC-AGGCCTC--CCCTGCTGCTGCCAGCCCAGCCC-CTG------CAGACC s fr1.chrUn 23790247 81 + 349519338 CTGAGGCCCTG-----------CCTGT-TGCTGAGGCCCCGCCTGTTA--CCGAGGCACC--GCCTGTTGCCGCGG---TGCCGC-CTGTCGCCACGGTGC s danRer1.chrUn 326870838 70 - 367113659 CCGCAGCTCCA-----------------CGCTCCAGGCCC-TCCGCAGCTCC-ACGCTCCAGGCCCTCCGCAG------CTCCACGCTC------CAGGCC a score=4827.0 s hg17.chr17_random 2513824 43 + 2618010 CCCCCTGCGGCC-----AGCCGACCCCT-----TGCAG------CACCAC-CTG------CAGGAC s panTro1.chr19 42782226 43 - 82489036 CCCCCTGCGGCC-----AGCCGACCCCT-----TGCAG------CACCAC-CTG------CAGGAC s canFam1.chrUn 24523639 51 + 91062872 CCGTCTGCTGCC-----AGGCCTCCCCT---GCTGCTGCCAGCCCAGCCC-CTG------CAGACC s fr1.chrUn 23790273 55 + 349519338 CCGCCTGTTACC----GAGGCACCGCCTGTTGCCGCGG------TGCCGC-CTGTCGCCACGGTGC s danRer1.chrUn 326870858 50 - 367113659 CCCTCCGCAGCTCCACGCTCCAGGCCCT----CCGCAG------CTCCACGCTC------CAGGCC a score=2202.0 s hg17.chr17_random 2513867 6 + 2618010 CTCCTC s panTro1.chr19 42782269 6 - 82489036 CTCCTC s canFam1.chrUn 24523690 6 + 91062872 CTCCTC s fr1.chrUn 23790328 6 + 349519338 CGCCTG a score=886.0 s hg17.chr17_random 2513867 6 + 2618010 CTCCTC s canFam1.chrUn 24523690 6 + 91062872 CTCCTC s fr1.chrUn 23790328 6 + 349519338 CGCCTG a score=886.0 s hg17.chr17_random 2513867 6 + 2618010 CTCCTC s canFam1.chrUn 24523690 6 + 91062872 CTCCTC s fr1.chrUn 23790328 6 + 349519338 CGCCTG a score=152.0 s hg17.chr17_random 2513867 6 + 2618010 CTCCTC s fr1.chrUn 23790328 6 + 349519338 CGCCTG a score=10285.0 s hg17.chr17_random 2513873 8 + 2618010 CTGCTGAG s panTro1.chr19 42782275 8 - 82489036 CTGCTGAG s mm5.chr11 22374856 8 - 121648857 CTGCTGAG s rn3.chr10 22161959 8 - 110733352 CTGCTGAG s canFam1.chr9 14295019 8 + 53642819 CTGCTAAG s fr1.chrUn 23790334 8 + 349519338 TTGCTGAG a score=6560.0 s hg17.chr17_random 2513881 12 + 2618010 CAGTGCACTGAC s panTro1.chr19 42782283 12 - 82489036 CAGTGCACTGAC s mm5.chr11 22374864 12 - 121648857 CAGTGAGCTGAG s rn3.chr10 22161967 12 - 110733352 CAGTGAGCTGAG s canFam1.chr9 14295027 12 + 53642819 AAGTGTACCGAC a score=3593.0 s hg17.chr17_random 2513893 55 + 2618010 TGCCCGGAACGCGTAACTCACCTTCTGAAAA--AGTCACACTCCCATTTCTCTACTT s mm5.chr11 22374876 51 - 121648857 CACCTGGGGCAAG--AGTCATCCTTTAGAAAATAGTCATGTTCCAGTTTCT----TC s rn3.chr10 22161979 54 - 110733352 CACCTGGGGCAAG--AGCCATCCTTCAGAAAGTCGTC-TGTTCCAGTTTCTCTGTGT s canFam1.chr9 14295039 52 + 53642819 TGTCTAGAACAAGCTATCAACTTTCTGAAAA--CGTAGTACTCCCATCTCTACC--- a score=147.0 s hg17.chr17_random 2513948 3 + 2618010 TAA s mm5.chr11 22374927 3 - 121648857 TTG s canFam1.chr9 14295091 3 + 53642819 TAA a score=464.0 s hg17.chr17_random 2513948 5 + 2618010 TAACA s canFam1.chr9 14295091 5 + 53642819 TAACA a score=114.0 s hg17.chr17_random 2513951 2 + 2618010 CA s panTro1.chr19 42782395 2 - 82489036 CA s mm5.chr11 22374930 1 - 121648857 -T s canFam1.chr9 14295094 2 + 53642819 CA a score=59901.0 s hg17.chr17_random 2513953 212 + 2618010 AACCTCCTGCCCTGAGCCCACAA-AACCCCACATCAACCAAGCAGGG-AACCGAGCACTGGGCTCATCTATTAAGACCTGGGCCATTCTGAAGTCTGTAAA--AGAAGCAATTTCCTTCTT-----------CTTAAGATTTCGTGGCATGTTTATTTTCTAATAAATATCTGTTCTTTGGCCTTGCAAAAAGA--TTTGGTTTTATTTACTCATTCt------------aatattttgta s panTro1.chr19 42782397 212 - 82489036 AACCTCCTGCCCTGAGCCC-CAA-AACCCCACATCAACCAAGCTGGGCAACTGAGCACTGGGCTCATCTATTAAGACCTGGGCCATTCTGAATTCTGTAAA--AGAAGCAATTTCCTTCTT-----------CTTAAGATTTCGTGGCATGTTTATTTTCTAATAAATATCTGTTCTTTGGCCTTGCAAAAAGC--TTTGGTTTTATTTACTCATTCt------------aatattttgta s mm5.chr11 22374931 188 - 121648857 AAACTCCTGCCCTGAGCC-------ATCCTAAATCAGCCAGCTTGTG-AATGGAGGCCCAG-----------AAGACTTGTGC-------AAGTCTTTATA--GCTGTCTGTGTCCTTCTTTCTCTCTTGGGTCTAAAGTCTTGGATCATATTCATTTAAAAATAAATTTCACTTCTTGGGCCTCACA----------TTGCTTTGATTGTTCTTCCG------------TGTGCCTT--- s rn3.chr10 22162033 215 - 110733352 AAACTCCTCCCGCGAGCCACCGATACCCCTGAATCAACCAGCTTGTG-AATAGAGGCCCGG-----------AAAACTTGTGC-------AAGTCTTTATA--GCTGTCTGTGCCCTGCTTTCTATCTTGGGTCTAAAGTCTTGAAACATGCTTATTTTAAAATAAATTTCTCTTCTTGGGCCTCACCAACCA-----TTGCTTTGATCGTTCTTACTTGTACCTTTTAAAATATTTTGCA s canFam1.chr9 14295096 227 + 53642819 AACCTCCTGCCCTGAACTATCAA-GACCCCAAGTCAACCAGAGGTTG-AATGGAAATACAGGCTCACTTATTAAGACTTGGGCTGTTCTCAAGTCTTTGTAACACTATCAACTCCCTTCTTCCCACTGTAGATCTTAGATCTTGTGGCATGCTTCTTTTCTAATAAACTTCTCATCTTTGGCCTAGAAAATACATTTTTGGTTTTACTTGTTCATTCT------------AATTTTTTTCA a score=4806.0 s hg17.chr17_random 2514165 13 + 2618010 ttaaattaatttt s panTro1.chr19 42782609 13 - 82489036 ttaaattaatttt s mm5.chr11 22375119 13 - 121648857 TTAAAATATTTTT s canFam1.chr9 14295323 13 + 53642819 TTAAGTTTATTTT a score=819.0 s hg17.chr17_random 2514178 3 + 2618010 tta s panTro1.chr19 42782622 3 - 82489036 tta s canFam1.chr9 14295336 3 + 53642819 TTA a score=207268.0 s hg17.chr17_random 2514181 2283 + 2618010 attaaaaaaactgacacataattgtacatatttatggggtgcaatgtaatgtttccatacatgtatacgttgtgtaataatcaagtcagggtgtttagcatattcgtcacctcatacatttatcatttcttcatggtaagatcatttaaaatattctctgatcgctattttgaaatatatgataaaatattactaaccacagtcaccctactgtacattagaataccaaaacttatccctcctatctacctgtaactttgtacctgtagaccaatctctgcctatcctcccctcctctcaccctccccagcctctggtagtcactattctactctctacttctatgagatcaacttctttagatttcacataggagtgagtgaatgtgctatttgtctttctgtgcctggttaatttcacttaacataatgtcccccaggttcatccatgttgctgcacatgacagtatttcattctttttcatggctgatagtatttcattgtgtgtttgggtgtgagtgtgtgtcacattttctttatccattcatccattgatgaacacttagattgttttcatatgttggctgttgtgaatcgtgctgcaataaacatggaagtgcagaaatctcctcaacatactgatttcatttcctttgcgtatatactcagtagtgggattcctggatcacatgatcgtcctatttttaatttttggggaaccctccatactgttttccataatggctatactactttacattccctctaaccttgtatgagttcccttttttccacatccacaccagcatttgttatctttttgtatttttgataatagccattctaattgtggtgatatggtatctcattgcggttttgatttgcatttcctgatgattagtgatgctgagcacttcttcatatatgtgttggaaatttgtatgttttcttttgtgaaatatctattcaggtcttttacctatttttaattggattttttattattattcactgttgagttgttcaagttccttatatattctagatattaacccctggtcagatgcatagtttgaaaatattttctcccaaatttttgcaatctactcatctgacaaagggctaatatccagaatctacaaagaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaataagtgggtgaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaa-tgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggtgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagacagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctataaagatacatgcacatgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagattggattaagaaaatgtggcacatatacatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggagggggaacatcacacaccggggactgttgtgtggtggggggaggggggagggatagcattaggagatatacctaatgtaaatgatgagttaatgggtgcagcacaccaacatggcacacgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaaagtataataaaaaaaaaaGTACCAAAAAAGAaaatattttctcccattctctaggctgtctcttcactctgctgatttgattgtttcctttgctgtgcagaaggttttaattttatataatcccatttgtttactttcacttttgttgcctgtgcctttgaggtcttatccccccaagaaaaaaccattgcccagacaagtgtcataaaatgtttcctgtgggttttcttctagttgttttattatatgtggtcttatatttaagtatttaatccattttggg s panTro1.chr19 42782625 2282 - 82489036 attaaaaaa-ctgacacatatttgtacatatttatggggtgcaatgtgatgtttccatacatgtatacattgtgtaataatcaagtcagggtgtttagcatattcgtcacctcatacattaatcatttcttcatggtaagatcatttaaaatattctctgatcgctattttgaaatatatgatacaatattattaaccacagtcaccccactgtacatcagaataccaaaacttatccctcctatctgcctgtaactttgtacctgtagaccaatctctgcctatcctcccctcctctcaccctccccagcctctggtagtcactattctactctctacttctatgagatcaacttctttagatttcacataggagtgagagaatgtgctatttgtctttctgtgcctggttaatttcacttaacataatgtcccccaggttcatccatgttgctgcacatgacagtatttcattctttttcatggctgatagtatttcattgtgtgtttgtgtgtgagtgtgtgtcacattttctttatccattcatccattgatggacacttagattgttttcatatgttggctgttgtgaatcgtgctgcaataaacatggaagtgcagatatctcctcaacatactgatttcatttcctttgcgtatatactccgtagtgggattcctggatcacatggtcgtcctatttttaatttttggggaaccctccatactgttttccataatggctatactactttacattccctccaaccttgtatgagttcccttttttccacatccacaccagcattttttatctttttgtatttttgataatagccattctaattgtggtgatatggtatctcattgcggttttgatttgcatttcctgatgattagtgatgctgagcacttcttcatatatgtgttggcaatttgtatgttttcttttgtgaaatatctattcaggtcttttacctatttttaattggattttttattattattcactgttgagttgttcaagttccttatatattctagatattaacccctggtcagatgcatagtttgaaaatattttctcccaCatttttgcaatctactcatctgacaaagggctaatatccagaatctacaaagaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaataagtgggtgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggtgatcattaaaaagtcaggaaacaacaggtgctggacaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagacagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattattaatcatgctgctataaagatacatgcacatgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagactggattaagaaaatgtggcacatatacatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaatcatcattctcagcaaactatcgcaaggacagaaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggagggggaacatcacacaccagggcctattgtgtggtggggggaggggggagggatagcattaggagatatacctaatgtaaatgatgagttaatgggtgcagcacaccaacatggcacacgtatatatatgtaaaaaacctgcacgttgtgcacatgtaccctagaacttaaa-gtataattttaaaaaaaGTACCAAAAAAGAaaatattttctcccattatctaggctgtctcttcactctgctgatttgattgtttcctttgctgtgcagaaggttttaattttatataatcccatttgtttactttcacttttgttgcctgtgcctttgaggtcttatccccccaagaaaaaaccattgtccagaccagtgccataaaatgtttcctgtgtgttttcttctagttgttttattatgtgtggtcttatatttaagtatttaatccattttggg a score=984.0 s hg17.chr17_random 2516464 20 + 2618010 -ttgtttttaaatgagttaag---- s panTro1.chr19 42784907 20 - 82489036 -ttgtttataaatgaattgag---- s canFam1.chr9 14295339 25 + 53642819 TTTTTACTTAAATCAATTTGCCAAC a score=20833.0 s hg17.chr17_random 2516484 82 + 2618010 aaatagggtctaaATGTGCTGCTTGCCTACCATATGCAAGTCACAGGCTATATGG--TATAAAATAGAAAGTAAAATTGAATTA s panTro1.chr19 42784927 82 - 82489036 aaatagggtctaaATGTGCTGCTTGCCTACCATATGCAAGTCACAGGCTATATGG--TATAAAATAGAAAGTAAAATCGAATTA s mm5.chr11 22375390 76 - 121648857 AATTAGGTCTCAAAAATGCTAATTGCTTAGCACCTGCAAGTCACAGACTGCACGGACTATAAGA--------AACATTCAATTG s canFam1.chr9 14295364 74 + 53642819 ATATA------AAATATACTGATTGCCTA-CATCTGCAAGTCACAGGCTAGATGG--TATATGATA-AAATTAAAATTGAGTTG a score=27094.0 s hg17.chr17_random 2516566 117 + 2618010 AAAATGTTCCCATCTTCAAAAAGATTCTAGAGACATGAGTCATATTCACCTATAATTCATCTAAAAACTAGAATATTAAAAAATAAAAGTACAACACTGTGTGGTGTCAACACAGAA s panTro1.chr19 42785009 117 - 82489036 AAAATGTTCCCATCTTCAAAAAGATTCTAGAGACATGAGTCATATTCACCTATAATTCATCTAAAAAGTAGAATATTAAAAAATAAAAGTACAACACTGTGTGGTGTCAACACAGAA s mm5.chr11 22375970 110 - 121648857 AAAATGTTTCT-TTTATTAAAAGCCTCTGGGAAGATGAGTCATATCTACCT-TGACACAACTACATAGATGAATA-TGAGAAATAGAAGTATA----CATATAGGATCCACGAAGAT s canFam1.chr9 14295438 115 + 53642819 AAAATGCTCCCCTCTTCAAGAAACTTCTAGGGAGATAAATGAAATTCACAA-TGATGCAACTAAAAATTATAAAA-TGAAAAAAAAAAGTACGACATACATTGATGTCAACAGAGAA a score=116276.0 s hg17.chr17_random 2516683 329 + 2618010 GTCACTGT-----TGGTTGGG----GAAAATAAGAAAGATTGAAAAGAGAAGCTAACATTTTATATAGGTTCAGATTGTGGTGTCCAGATCACAGGGA---TGGCATTCTCAGCAATAGAAATAGTATGAGCAAAGGTGTGGAGGGAGGGGA--ACCATAGGGTTGTTCAGAGTACGGTTTGGCTGGGGGCACTGGATATATATAGAGTGATAATGAAAGAAAGATTTGGAAAATTTGTATGCTTTGAATACTAGCCAACGGAGTACACCCTTAATGCAATAAGCAGTAAGGAGTTGTTGAAAGCTTTGGGGCAGGAAAATGGCATAACAAGAGCAGGGCATT s panTro1.chr19 42785126 329 - 82489036 GTCACTGT-----TGGTTGGG----GAAAATAAGAAAGATTGAAAAGAGAAGCTAACATTTTATATAGGTTCAGATTGTGGTGTCCAGATCACAGGGA---TGGCATTCTCAGCAATAGAAATAGTATGAGCAAAGGTGTGGAGGGAGGGGA--ACCATAGGGTTGTTCAGAGTACGGTTTGGCTGGGGGCACTGGATATATATAGAGTGATAGTGAAAGAAAGATTTGGAAAATTTGTATGCTTTGAATACTAGCCAACGGAGTACATCCTTAATGCAATAAGCAGTAAGGAGTTGTTGAAAGCTTTGGGGCAGGAAAATGGCATAACAAGAGCAGGGCATT s mm5.chr11 22376080 309 - 121648857 GTTACTATTCTTGTTATTAGA----AAGAATAAGGAAGTTTGAAAA---CTGTTAGTATCTTATATGAGTTAAAATTTAGTTACCCAGACTAGAAGGAAAGTGGTGACCTCATCCATGGAAACAGTATG-GCCGAGGTATGGGGGAAGT-----ACCTCAAGGCCCATC--TATACAATTTGGCT-AGAGCACTGGATATATGAAGA--------GGAAGGATCATTTAGAGAATTAATATGCTTTGCCTATCAGCCAGTCGAG--------TCAGAAAGAAAGCTCTAAGGAGCTGTCTAAAGCCTCGGGTCCAT-GCATGGCACAATAGGAGT-TGGTGCT s rn3.chr10 22163110 303 - 110733352 GTTACTAT-----TGTTTAGA----AAGAATAAGGAAGTCTGAGAA---ATGCTAATATCTTATATGAGTTAAAATCTTGTTGCCCAGACTAGAAGGAAAGTGGTGTTCTCATCCATGGGAACAGAATGGCCAGAGGTATGGAGGGAGGGAAGTACCTCAAGGGCCATC--TATACATTTTGGCT-ACAGCACTGGACAGATAAAGAGCAAGAGAGGAAGAACAATTTAGAGAATTAATGTGCTTTCCCTATCCATC---------------------CATAAGCTCTAAGGAGCTGTTTAAAGCCTTGGGTCCAT-ACATGGCATGAGAGGT---CGAGGCT s canFam1.chr9 14295553 318 + 53642819 ATCGGTAT-----TGACTAGGGAGAGAGAACAAGGAAAACTGAGAA-GGGAGCTAGCATTTTGTATAGGTTAACATTTTGACATGCAGGTATAAAAGATGATAGCATTCTCAACACTGGTAATAATACACATGAAGGTATGGAGAGAGGGAC------------TGTTCAGAGGATAGTTTGGCTGGGAACACTGGATATATGTAGAATGATAGTGGAAAATAAATTTGGAAAATGTGTATGCTTTGAATACTAACCAAAGGAGTATGCCCTTAGTGCAGTAAGTACTAGGGAGCTGTTGAAAGTCTTGGGGCAAGTGAATGGCACAAA-------GGGTATT a score=0.0 s hg17.chr17_random 2517012 9 + 2618010 GGGACAATT a score=3572.0 s hg17.chr17_random 2517012 8 + 2618010 GGGACAAT s panTro1.chr19 42785455 8 - 82489036 GGGACAAT s mm5.chr11 22376389 8 - 121648857 GGGATAGT s rn3.chr10 22163413 8 - 110733352 GGGATAGT a score=91.0 s hg17.chr17_random 2517020 1 + 2618010 T s panTro1.chr19 42785463 1 - 82489036 T a score=6684.0 s hg17.chr17_random 2517021 27 + 2618010 CTCATGATAGCTCCTTATAAAGACAGA s panTro1.chr19 42785464 27 - 82489036 CTCATGATAGCTCCTTATAAAGACAGA s rn3.chr10 22163421 25 - 110733352 -CTATGAC-GTTTCTTATGACGACAAA s canFam1.chr9 14295871 27 + 53642819 CTTATGGTAGCTGCTTATCAAAAATAA a score=12646.0 s hg17.chr17_random 2517048 80 + 2618010 GGTCAAAGGCCAGAGAAATGAGTCGTACAGAACTATACAGAAACTAATCAGGAAGATATTGCCTTGGT-CAAGTGAT-TACA s panTro1.chr19 42785491 80 - 82489036 GGTCAAAAGCCAGAGAAATGAGTCGTACAGAACTATACAGAAACTAATCAGGAAGATATTGCCTTGGT-CAAGTGAT-TACA s canFam1.chr9 14295898 74 + 53642819 GGCCAAAGGCTAGACATATA--------ATAGCTATACAGAAACAATTCAAGAGGCCATTGTACTGGTCCAAGTGATATACA a score=4230.0 s hg17.chr17_random 2517128 28 + 2618010 ATAAGAGCTCAACTAAGATAATACCCAT s panTro1.chr19 42785571 28 - 82489036 ATAAGAGCTCAACTAAGATAATACCCAT s rn3.chr10 22163792 28 - 110733352 ACACACACACACACACACACACACACAC s canFam1.chr9 14295972 28 + 53642819 GTAAGAACTGACCTACAATGATAGCCAT a score=35366.0 s hg17.chr17_random 2517156 79 + 2618010 GGAATAAAGAAG-ACACAATGAGTATAGCAGATGTAGAAACCCAGAAAGTATATTAACTTAGTTGAATGTGGGAAACAAA s panTro1.chr19 42785599 79 - 82489036 GGAATAAAGAAG-ACACAATGAGTATAGCAGATGTAGAAACCCAGAAAGTATATTAACTTAGTTGAATGTGGGAAACAAA s mm5.chr11 22377042 76 - 121648857 GAGAGAGAGAAGTCCACAATGAAGATGACAAGCAAAGAAAACCAGAAAGTCTGTTA----AATTCAAAGTGGGAGTCAAG s rn3.chr10 22163820 75 - 110733352 -GCACAGAGGAATCCACAATAAAAATGACAAACACAGAAACCCAGAAGGTCCATTA----AATTCAAGGTGGGAAACAAG s canFam1.chr9 14296000 74 + 53642819 GGAATAAAGAAG-ACACAAAGAGTAGGGCAGACATAGAAACTCAGAAGATATATTA-CCTAATT----GTGGGAAACAAA a score=93031.0 s hg17.chr17_random 2517235 286 + 2618010 AAACAACT-----------AGGAGGCAAATGTGACTTATTCCAATTATAAGT----CTCT----GGTCCAGATACTTAAAAGAACTTTAACATATTTGTACTTATTTATTGTGTATTTAAAATCACTACTCCATAGTGCCATCTCTCTACCATCTAATATTTCTATTCTTGTGCTATTACAAAATACCTTTTTTTTTTAGAAAAAAAGACAAAGAC-AAAGAGCCTTACTAACATTAATTGATTCTgaaaagcagcatgg-tataaaataaaaagaactggtctaggaacaagtgataggaatttta s panTro1.chr19 42785678 284 - 82489036 AAACAACT-----------AGGAGGCAAATGTGACTTATTCCAATTATAAGT----CTCT----CGTCCAGATACTTAAAAGAACTTTAACATATTTGTACTTATTTATTGTGTATTTAAAATCACTACTCCATAGTGCCATCTCTCTACCATCTAATATTTCTATTCTTGTGCTATTACAAAATACCTTTTTTTT--AGAAAAAAAGACAAAGAC-AAAGAGCCTTACTAACATTAATTGATTCTgaaaagcagcatgg-tataaaataaaaagaactggtctaggaacaagtgataggaatttta s mm5.chr11 22377118 271 - 121648857 GAACTGCT-----------AGAAGGTAAATGTGACTTCTTTCAATTCTGGGT--------------TTAAAATGCTTAAAGGGGCTATAACATACTTGTACATCTTTGCTGTGTCTTTCACATTATTATTCCATAGTTTATCCTACCCAACACCTCATGTCTATATTTTTGAACTTCTAAAA-------TCTATTT--AAAATAAAGGTGATACATAAAAGAGTTTGACTGATACTCACTGAATCTGGAAAGCAGCCAGGCTAGAAAAGAAAAAGAACTGG-CTAAGGACAGGAGAGGGGGCTTTA- s rn3.chr10 22163895 255 - 110733352 AAGCAACT-----------AGAAAGTAAATATGACTTATTTCAATTCTGGGC--------------TAAAAATTCTTGAAGGGGTTATAACATATTTATACATCTTTGCTGTGTGTTC-GCATTATTATTCCATTGCTTATCTTGCCCAACACCTCATATTTATATTTTTGAACTGCTGAAA-------CCTATTT---------------AAGAT-AAAG-GCAGTACTGATACTCACCGAACCCAGAAAGCATCAGGC-TAGACAATAAAAAGAACTGG-CTGGGGGCAGGAGAGGAGGCTTTCA s canFam1.chr9 14296247 283 + 53642819 aaataaataaaatcttttaaaaaatCAAATGTG--TTATTGCAGCTTTAGGTAAAACTCTTTTGTGAGAAGACACCTAAAAGAATCTTAACATATTCATGCTTATTTACTGTATGTTT------ACTACTCCATAGCAT-TTCTGCCCACTA-CTAGTATTTCTCTTCTTGAGCTATTCTAAAGT----ATTTTTT--AAAAATAAGG----AGAC-AAAGAGTTTTAATA--CTTAATTGATCCTggaaaacagcatgg-tataaaataaaatgaattgatgtaggagggagagatagaagtttta a score=391762.0 s hg17.chr17_random 2517521 1164 + 2618010 tacccagctcttctggttgtgtactgtgtgaatggaacaagccact---------------taacctcttcaa--------gactcaaga-----gtattctaacatcagccgatgttaagtgaaaatgaaaagtgctccatagcacaTCACCAATGTTCCCATTTAGAA-CTTTGAGACTAAATGGTTCTATACTCAACTCTTTTCCTTGATTAATCCCTCCTATTGCTACTACACTGAT---TTTTATACTAGAGCAAGATACAAAACAAATAGATGGGATCTTGCTTTCTGTATAAGCCTTTAGTGCTCTGGGCATAGT---AGAAGTTAATAAATATGTGCTATTTATAATAAGAATGAT--------------------GtcagtttctacacctataaaattaagtggtggaacaagataatttactacatttttgatctccaacattcattgattACATATAACCATTTTCAACTTCATACCTACAGTCATGGTTACCATATGACGTGAACATCTTTACTGAAGCTGGCATGAATCACATTGTGATATAACCCCATTCCTGTACAAACAAATGCCACCACCTCATAAAAAGCTAACTATGTGTTTCTATTCATGATTGGAAGGGAGAAATAAACCTACCCCAAGTAGAAATAATATG--TTTTTGACCAGC----CTTTTTTCATTTAT-CTCACGT-AACCCTAAACT---CCCAGTGAAAATTA----CATTCTTTCTTCTGGCAATGACCAGGAATTGTTTTAACTTTTATTTTGCTGAAATTTTTCTTAATCTCTTT-----------------------------------------------------------------------GCATT-----------------------------------------TATTA-----------------TACT-AC-ACCTCTTG---AACTATATTTGGTCACCCATTTT--------CTAACCTGCCTTATA--------AAGCAGATAAAAGTA----TTTTCTAACTCTTGCTTTTTCTTTGATTTATTCCCTTTCCTAAATTCAGTTGTCATGCTCTTTGGTCTAATATCTTTTC--ACAGGACACATGGTTTAGTAACTTGAAATGAC-ATAAATTAAAATTAAATTCTGCCTTTGAAAAATTA----TATGCCAGATAATCCATATACAAGTGATTTTTGTCTTT-CATAGAGAAGTGTAAATTTTGTTAAAATATTT----TGCAAT-TTTTTCCAATTACTGAATAT-GAATTTTAGCCTCTTTTTTAAGA-----------------------GACATTGAAATTGAACAGGTTTTGTTTTATATATCCTCCTGAGTGATCAATGTTTCCTAAAATATGAA-TG--TGAAGTTCAGGAGA s panTro1.chr19 42785962 1164 - 82489036 tacccagctcttctggttgtgtactgtgtgaatggaacaagccact---------------taacctcttcaa--------gactcaAGA-----GTATTCTAACATCAACCGATGTTAAGTGAAAATGAAAAGTGCTCCATACCACATCACCAATGTTCCCATTTAGAA-CTTTGAGACTAAATGGTTCTATACTCAACTCTTTTCCTTGATTAATCCCTCCTATTGCTACTACACTGAT---TTTTATACTAGAGCAAGATACAAAACAAATAGATGGGATCTTGCTTTCTGTATAAGCCTTTAGTGCTCTGGGCATAGT---AGAAGTTAATAAATATGTGCTATTTATAATAAGAATGAT--------------------GtcagtttctacacctataaaattaagtggtggaacaggataatttactacatttttgatctccaacattcagtgattACATATAACCATTTTCAACTTCATACCTACAGTCATGGTTACCATATGACGTGAACATCTTTACTGAAGCTGGCATGACTCACACTGTGATATAACCCCATTCCTGTACAAACAAATGCCACCACCTCATAAAAAGCTAACTATGTGTTTCTATTCATGATTGGAAGGGAGAAATAAACCTACCCCAAGTAGAAATAATATG--TTTTTGACCAGC----CTTTTTTCATTTAT-CTCATGT-AACCCTAAACT---CCCAGTGAAAATTA----CATTCTTTCTTCTGGCAATGACCAGGAATTGTTTTAACTTTTATTTTGCTGAAATTTTTCTTAATCTCTTT-----------------------------------------------------------------------GCATT-----------------------------------------TATTA-----------------TACT-AC-ACCTCTTG---AACTATATTTGGTCACCCATTTT--------CTAACCTGCCTTATA--------AAGCAGATAAAAGTA----TTTTCTAACTCTTGCTTTTTCTTTGATTTATTCCCTTTCCTAAATTCAGTTGTCATGCTCTTTGGTCTAATATCTTTTC--ACAGGACACATGGTTTAGTAAAGTGAAATGAC-ATAAATTAAAATTAAATTCTGCCTTTGAAAAATTA----TATGCCAGATAATCCATATACAAGTGATTTTTGTCTTT-CATAGAGAAGTGTAAATTTCATTAAAATATTT----TGCAAT-TTTTTCCAATTACTGAATAT-GAATTTTAGCCTCTTTTTTAAGA-----------------------GACATTGAAATTGAACAGGTTTTGTTTTATATATCCTCCTGAGTGATCAATGTTTCCTAAAATATGAA-TG--TGAAGTTCAGGAGA s mm5.chr11 22377892 1131 - 121648857 AAGCCAGCTCTTCC---------CTATGTGAATTCAGTGC-TCATT---------------TAACTTTTGCAAATTTATCTGATCCCAGATCACTGTGTTCTCCTAACAATTGACACTGAGGGAAAATGAGAAGTCACCTCTACCAGCACACAGATGTTCCAATCTAGGATTTTTGAG----AATGGCTCTGTATTGAATTCATTTTTTTAAATGA--------------ACTCCACTGATACCTTGTGCACCCCAGCAAAAT--GAAACAGATAATTCTACTCTTTCTTTAT-----AGCCTTTAGTGTTCTGTGCAGAGT---AAACCAAAACAAGTTTGTGATACTTCTAATGAAAGC-AT--------------------ATTGCTTTCTGCACCCAAAATATGAAGTGGTCGAA-AAGATGACTTATTAGTTTTTC--TTTGCATTATTCAGTGGTTACATGTAACCATTTTCAACTTCATGTCTGTAGTCATGGCTACCAGACAGCAT--CCACCTTTACTGAGACTGGTATGCATGCTATTCCAGTGTAATCTTAGCGCTGTTTGCAACAGTATCACCCTCTCCTAAAAGGC-AACTTTGTGTTTCTAGCCACATGTACAAGG--TCAGTAAACACACTACAGGCAGCAAAAGTG-G--CTTTTGGCCACTAC-ATGTTTTTCATGTCCACTCACGT-AACCCTAAACA---CTTAGTGGAAATAAATATCACATTGCCTTCTGTTGGCTACCAGGAATTGTTTTAGCTTATTGTTTGTTAAGATTTACCTTAAG-TTTTT-----------------------------------------------------------------------GCATT-----------------------------------------TATAA----------------CCACTAAC-ACATATTGATAAACCATTTTCAATCTCC--------------CTTACAAACATTATG--------AAGCAGAAAAAAATACTATTTTCCTGACTCCATTTGTATCCTTG----GCTCCTCTTTATAAATTGACCTGTTGTCCTCTTTGTT------------------GCACACATGGCACAATAACAT-AAATGAC-ATAAATTGAAATC-AACTCTGACTTTGAGGGATGT----TGC-CCGGATGATCCACATAGCATTAATTTTTTAATGCACATAAAGAAGTATAAATTTCACTTGAAGATTTTGTGTGTGTT-TTTCCCCAGTTACTATTTATAAAATTTTAGCCTCTTCTTCAAAT-----------------------TGAATTGGAGTGCAACAGGATTTGTTCCATATACTCTTCTGAGTGACAAATGTTTCCTCAAATATTAA-TAACTTAAGTGTAGAAAA s rn3.chr10 22164150 1144 - 110733352 AAGCCAGCTCTTCC---------CCATGTGGGTACAGGTGCTCGTT---------------TAACCTCTGCAGATTTATCTGATCCCAGATCACGGTGTTCTCCCAACAGCTGATGCTGAG-GGAAATGAGAAGTCACTTCTACCAGCACACCAGTGTTCCAGTCTAGGATTTTTGTGAATGAATGGCTCTGTATTTAATTCAATTTTTAAATTAA----CTCCATTGAGACCTAACTGCT---TTGTGCACTGGAGCAAAA-ATGAGACAAATGAATCTACTCTTTCTTCAT----AACCCTTCAGCGTTCTGTGCATAGT---AAAACAAAGCCGTCTTGTGATACGTCTACTGAAAGT-AT--------------------ACTGCTTTCTGCACCTAAAATATGAAGTGGTCCA--CAGATGACTTAGT---TTTTC--TTTGCATTATCCAGTGGTTACATGTAACCATTTTCAACTTCATGCCTATAGTCATGGCTACCAGACAGCAC--TCATCGTCTCTGAAGCTGGCATTCATACTATTCCAGTGTTGTCTTAACACTGTTTGGAACAGTTTCCCCATCTCCTAAAAGCC-AGCTTTGTGTTTCCGTCCACATGTGCAGGG--TCAGCAAAATCACCACAGGCAGCAAAAATGAC--GTTTTGATCACT---GTGTTTTTCATGTCCCCTCACGG-AACCCTAAACA---CTGAGCAGAAATAAATA-CACATTGCCTTCTGTTGGCTACCAAGAATTA-TTTAACCTTTTGTTTGCTAAGA------TTAAGGTTTTT-----------------------------------------------------------------------GCATT-----------------------------------------TGTAA----------------CTACT-ACTACATATTG--------------GTAAACCACTTTCAATCTCCCTTACAAACATTATG--------AAGCAGGAAAAATTAGTA-TTTCCTAATTCCTTTTGTCTCCTTC----ACTCCTCTTTATAAACTGACCTGTTGTCCTCTTGAATGCAGTGCCCTCTCTGCCAGGGCACGAAGTGCAATAACGTAAAATGACAATAAGTTGAAATCAAACCCAGACTTTGAGGGACAC----TGT-CCAGATAATCCACGTAGCATTAATTTTTAACTCT-CATAAAGAAGTATAAATTTCACTTGAAGGTTTTGTGAGTGTT-TATCCCCACTTACTAATTAT-AAATTTTAGCCTCTTCTTTAAA-----------------------------TTGAGTGCAACAGGATTTGTTCCATACACTCTCCTGAGTGACAAATGTTTTCTCAAATATTAA-TGACCTAAGTATAGAAGA s canFam1.chr9 14296530 1358 + 53642819 tacccagctcttctggctgtctattgtgtgaattaaccaagtcactaatctctcCAAAATGCAGCCACTCCTA--------GACTCAGTA-----GTATTCTAACATCATCTGATGCCAAGAGGAAATTAAAAGCAGTCTATACCAAAAAATCAGTGTTCCAACTTAAAA-CTATAAGGATGGATGTTAGTATATTTGAATCTTTTCCTCGATTCATCCCTCCTATCAGTACTACAATGAT---TTGTACACTAGAGCAAGATATGAGGCAGACAGATTGAACCTC-CCTTCTGCACAACCCTTTAGTGCTCTGTGCATAATATGATGATTTAATAAACATTTGATACTTATAAAAACAATGATGTCAGTTTCTTTTAAAAAATGTCAGTTTCTATAACTATACAATCAAATGTTTGGACAAAACAATTTATTG--TTTTTGATCTCTGATACTTGATGATTCCTTCAACCACTTTTCAACTTCATACATGTGGTCATGGTTATCATATGACATGAATATCTTTCTTGATACTGGCATGAATCACATTCTAATGTAATTCTATCACTGTTCAAACCAATACTTCCACCTCATAAAAAGCTAACTATGTGCTTCTATTCAAGATTGGAAGGAAAGAATAAACCTACCACAAATAGCAATAATATGCTCTTTTGGCCACCACTTCTTTTTTCATTTCCCCCCATGTAAACACTACACATTCTTCTTTTGACAACA----TGTTCTTTCTTTTGGTAACCACCAA-AACTGTTTCAAATT-TATTTTCCTGA-ATGTATATCCAGCTTTCTGGCTATGTACTGTGTAAATGGAGCAGCTAGTCACTTACCTCTCCAAATTATAGTCATTCCTAGATTCAACAGTATTCTAACATTGGCTGGTGGTGAGGGGAAATTAAAAGTGGTCTATATCAAAAGATCAATCCTTTTCCACTTAT-ACCTATTG---AATGATATTTGATCATTCATTTC--------CTACCCTGCCTTATATGCACTGTAATCCAGAAAGGTTA----TTTCCTAACTTCTGCTTTTCCTTTTAGTGGTTCCCCTTCATAAATTCAATTGTTGTGCTCTTTGGTCTAATATCCTTTC--ACAGGACACATGGT------------GATTAC-ATAAATTGAAAATAAATCCCACTTATGAGAAATAAATACTAT-CTAGATAATCTATATAGCAGTGATTTTTATCATT-CATAGAAAAATATAAATTACACTTACATTTCT---GTGTAGTATTTTCCTCATTAATGGCTAT-GAATTTTAGGCTTTCTTTTAAATTTTGGCTAATAAAATATCCATAGTAAATTGGAATGGAACAGTTTTTGTTCTCTACATCTTCCTGAGTG----ATGTTTTCTCAAGTCTGAAGTG--TGAGATTCAGGAGA a score=657.0 s hg17.chr17_random 2518685 3 + 2618010 TAT s panTro1.chr19 42787126 3 - 82489036 TAT s mm5.chr11 22379023 3 - 121648857 TAC s canFam1.chr9 14297888 3 + 53642819 GAT a score=4387.0 s hg17.chr17_random 2518688 25 + 2618010 CAC-AGAAATT-GGAAAGATTCCATTT s panTro1.chr19 42787129 25 - 82489036 CAC-AGAAATT-GGAAAGATTCCATTT s canFam1.chr9 14297891 27 + 53642819 CATGAGAAATTGGGAGAGATTCAATTT a score=19095.0 s hg17.chr17_random 2518713 61 + 2618010 CAGGGAAAAATCTATGAATTTCTATGAATATAGAGTTTATCAGAGTTTCTATCTGGCTAAT s panTro1.chr19 42787154 61 - 82489036 CAGGGAAAAATCTATGAATTTCTATGAATATAGAGTTTATCAGAGTTTCTATCTGGCTAAT s mm5.chr11 22379150 55 - 121648857 TATGGAGGAATCTGTAAATACCTGTCAATGTATAATATATCA------CTTTCTGAGCAAC s canFam1.chr9 14297918 60 + 53642819 -CTGGAAAAATCTATGGATTTCTATCAATGTGAAGTTTATCAGAGTTTCTATCTGACTAAC a score=0.0 s hg17.chr17_random 2518774 9 + 2618010 AAGATTATA a score=13.0 s hg17.chr17_random 2518774 8 + 2618010 AAGATTAT s panTro1.chr19 42787215 8 - 82489036 AAGATTAT s mm5.chr11 22379205 5 - 121648857 AATGT--- a score=273.0 s hg17.chr17_random 2518782 1 + 2618010 A s panTro1.chr19 42787223 1 - 82489036 A s rn3.chr10 22165497 1 - 110733352 A a score=224503.0 s hg17.chr17_random 2518783 505 + 2618010 TCGAGAGAGGATAATCTTA---TTAGTCTA---------------------------------------AAAAATACAAAG-CA----GTCTTACATAAGGGCAA-TCATGATTAATAATTCTTTTCTGGAGACCTGAGGTTTGGTGAATATGATCTCCAAAATCACATCACCTTATGGGTGAGAGTCACTTTGTCAGGTGATATACCCACAAGTGCAAACCTGAAGCTGAAGCTCAAGTGGAAATTATACCATTGTTTGTAAACAAAATG-TTAACATTTTTACCAAGGACAAACACATTTGGTGAGTATTAGCTGAGCAATAAGGAAAAATCAATTTTGAGATATATTTAAAACAATTCAGCATTTGAACCATCAGAGGGCCCTAGAAAGGCTGGTTTAAAGAGTAACAAGATAAAAATGTTGCTCGCCACAAATAGAGGAATTGGCCCAGACTTATAAAAAGCC-GGCAGTGGAATAGGCAGCCATAATTCAGAAACTCCTCCAAGCAACCCAACCTTCAGATCAACTCCTGACACCATGGCCTGCTGTCAG s panTro1.chr19 42787224 506 - 82489036 TCGAGAGAGGATAATCTTA---TTAGTCCA---------------------------------------AAAAATACAAAG-CA----GTCTTACATAAGGGCAA-TCATGATTAATAATTCTTTTCTGGAGACCTGAGGTTTGGTGAATATGATCTCCAAAATCACATCACCTTATGGGTGAGAGTCACTTTGTCAGGTGATATACCCACAAGTGCAAACCTGAAGCTGAAGCTCAAGTGGAAATTATACCATTGTCTGTAAACAAAATG-TTAACACTTTTACCAAGGACAAACACATTTGGTGAGTATTAGCTGAGCAATAAGGAAAAATCAATTTCGAGATATATTTAAAACAATTCAGCATTTGAACCATCAGAGGGCCCTAGAAAGGCTGGTTTAAAGAGTAACAAGATAAAAATGTTGCTCGCCACAAATAGAGGAATTGGCCCAGACTTATAAAAAGCCCGGCAGTGGAATAGGCAGCCATAATTCAGAAACTCCTCCAAGCAACCCAACCTTCAGATCAACTCCTGACACCATGGCCTGCTGTCAG s mm5.chr11 22379210 485 - 121648857 ---AGAAACTGTGATCTTA---CCAATAAA----------------------------ATATAACT---AGAAGCATAAAGACA----GTCTTTTTGAAGTACAACCCAGGGTCAACAACTCTTTCCTGAATACTTGAGATTTGGTGAGTATG-TCCCCATTATTATAATTCC-----GATGAGAGTCACCTTGTCAGGTGCTGTGACCACAAACACAAAACTGAAGCTAAGACTCAAGTGGAAATCACAACTCTGTTTGGGCTTAAAGCATTTAACATGTCTACCTCAGATGAGCATATGTAATGAGCATTAGCTGAGCAACAAAGACACACCCACTTACAGATATGTTTAAAGTAAC---------------TCAGAGGGCC--AGAAAGTCTGGTTTTAGGAGTAACAAGATAAATATGTTACCTGTCGC----AGAGTGACTGGCCAAGGATTATAAAAGGCT-CTTGGTAGGATAGGCAGCCAGAATCCAGAAACTCCTCTCAACTACACAGCTCTCAACTCAACG-GTAACACAATGGCCTGCTGTGCT s rn3.chr10 22165498 484 - 110733352 TCCAAAAACTGTGATCTTA---CCAATAAA----------------------------ATAAAACT---AGAATCATAAAGACA----GTCTTCTTGAAGGACAACCCAAGGTCAACAAGTCTTTCCTGCATACTTGAGATTTGGTGAGTATG-TCCCCATAACTATTGT--------GGTGAGAGTCACCTGGTCAGGCGCTGTGACCACAAACACAAGACTGAGGCTAAGACTCAAGTGGAAATCACGACTCTGTTTGG--TTAAGACATTTAACACGTCTACCTCAGGTGAACATGTGTGATGAGCATTAGCTGAGCCACAAGGACACACCCATTTACAGATATGTTTGAAGTAAC---------------TCAGGGGCCC--AGAAAGTCTGGTTTTAAGAGTAACAAGATAAAAATGTTACCTGTCGC----AGAGGGACTGGCCAAGGCATATAAAAGGCG-CTGGGTGGGATAGGCAGGCAGAATTCAGAAACTCCTCTCAACTACACTGCTCTCAACCCAACGCCTGACACCATGGCCTGCTGCTCT s canFam1.chr9 14297978 532 + 53642819 TGTAAAGACTATAATCTTAATTATAGTCAATTTCCATGATCTCTCCTGAATCTCACACTTCAGACTTGAGAAAACATCACT-CAAAATGTCTTACATAAGAAAGT-CAATTGTTACTAATT-TTTTCTGGAGACTTGAG-TTTGGTGAATATG-ACCCTAAAATCACATCATCTTATGAGTGAGAGTCACTTTGTCAGGTGAT------------GCAGAATGGAAGCTGAGACTTAAGGAGAAATTACAGCATTGTTTGGAAATGAAACA-ATAACATTTCTATTAAGGATGAA-ACATTTAGTGAATATTAGCTGAGCAATAAGGAAAAACCAATCTGAGGATGCATTTAAAATAACTCAATATTTGAACAATCAAAGGACTCTGGAAAAGCTTGTTTAAAGAGTAACAAGATAAAAATGCTGTCCACCACAAACAAAGGAACTGGCCAAGACCTATAAAAGGCC--CAAGTGGAATAAGCAGCTCTCACTCAGAAACTCCACTAAGCAACCCAACTCTCAACCCAGCTCCTG--ACCATGGCCTGCTGCTCC a score=39054.0 s hg17.chr17_random 2519288 55 + 2618010 ACCAGCTTCTGTGGATTTCCCAGCTGCTCCACCAGTGGGACCTGCGGCTCCAGCT s panTro1.chr19 42787730 55 - 82489036 ACCAGCTTCTGTGGATTTCCCAGCTGCTCCACCAGTGGGACCTGCGGATCCAGCT s mm5.chr11 22379695 46 - 121648857 ACAAGCTTCTGTGGCTTTCCCACTTGCTCCACAGGT---------GGCTCCAGCT s rn3.chr10 22165982 55 - 110733352 ACTAGCTTCTGTGGCTTTCCCACCTGCTCCACTGGTGGCACCTGTGGCTCCAGCT s canFam1.chr9 14298510 55 + 53642819 ACTAGCTTCTGTGGATTTCCCACCTGCTCCACCAGTGGGAACTGTGGCTCCAGCT s fr1.chrUn 303307833 55 + 349519338 AGCTGCTGCTGCTACTGCTGTAGCTGCTGCTGCTGCTGTAGCTGCTGCTGCTACT a score=25879.0 s hg17.chr17_random 2519343 85 + 2618010 GCTGCCAGCCAAGCTGCTGTGAGACCAGCTCCTGCCAGCCACGCTGCTGTGAGACCAGCTGCTGCCAGCCAAGCTGCTGCCA-GAC-- s panTro1.chr19 42787785 85 - 82489036 GCTGCCAGCCAAGCTGCTGTGAGACCAGCTCCTGCCAGCCATGCTGCTATGAGATCAGCTGCTGCCAGCCAAGCTGCTGCCA-GAC-- s mm5.chr11 22379741 85 - 121648857 GCTGCCAGCCCACCTGCACCCAGTCCAGCTGTTGCCAGCCCAGCTGTTGTGAGGCCAGCTGCTGCCAGCCAAGCTGTTGCGA-GAC-- s canFam1.chr9 14298565 55 + 53642819 GCTGCCAGCCTAGCTGCTGTCAGAC------------------------------CAGTTGCTGCCAGCCAACCAGCTGCCA-GAC-- s fr1.chrUn 303307888 73 + 349519338 GCTGT------AGCTGCTGCTGCTGTAGCTGCTGCTGCTGCTGCTG---------TAGCTGCTGCTGCTGTAGCTGCTGCTGCTACTG a score=3936.0 s hg17.chr17_random 2519428 5 + 2618010 ---CAGCT s panTro1.chr19 42787870 5 - 82489036 ---CAGCT s mm5.chr11 22386570 5 - 121648857 ---CAGCT s canFam1.chr9 14298620 5 + 53642819 ---CAGCT s fr1.chrUn 303307961 8 + 349519338 CTGTAGCT a score=7838.0 s hg17.chr17_random 2519433 48 + 2618010 TCTGTGGATTTCCTAGCTTCT-CAACCGGTGGGACTTGTGACTCTAGCT s panTro1.chr19 42787875 48 - 82489036 TCTGTGGATTTCCTAGCTTCT-CAACCAGTGGGACTTGTGACTCTAGCT s mm5.chr11 22386575 30 - 121648857 GTTGCCAG---CCCAGCTGC----------------TGCCAATCCAGTT s canFam1.chr9 14304410 48 + 53642819 TCTGTGGATTTCCCACCTGCT-CCACCAGTGGGAACTGTGGCTCCAGCT s fr1.chrUn 303307969 45 + 349519338 GCTGCTGCTGCTGTAGCTGCTACTACTGCTG----CTGCTGCTGTAGCT a score=234.0 s hg17.chr17_random 2519433 48 + 2618010 TCTGTGGATTTCCTAGCTTCT-CAACCGGTGGGACTTGTGACTCTAGCT s fr1.chrUn 303307969 45 + 349519338 GCTGCTGCTGCTGTAGCTGCTACTACTGCTG----CTGCTGCTGTAGCT a score=39008.0 s hg17.chr17_random 2519481 47 + 2618010 GCTGCCAGCCAAGCTGCTGTGAAACTAGCTGCTGCCAGCCAAGCTGC s panTro1.chr19 42787923 47 - 82489036 GCTGCCAGCCAAGCTGCTGTGAAACTAGCTGCTGCCAGCCAAGCTGC s mm5.chr11 22386605 47 - 121648857 GCTGCCAACCTTGCTGCTCCCAGACCAGCTGTTGCCAGCCCAGCTGC s rn3.chr10 22166037 47 - 110733352 GCTGCCAGCCCAGCTGTTGTGAGACCAGCTGCTTCCAGCCAAGCTGC s canFam1.chr9 14298625 47 + 53642819 GCTGCCAGCCAACTTGCTGTCAGACCAGCTGCTGCCAGCCCAGCTGT s fr1.chrUn 303308014 47 + 349519338 GCTGCTGCTGTAGCTGCTGCTGATGTAGCTGCTGCTGCTGCTGCTGC a score=4297.0 s hg17.chr17_random 2519528 14 + 2618010 TACCAGACCAGCTC s panTro1.chr19 42787970 14 - 82489036 TACCAGACCAGCTC s mm5.chr11 22386652 14 - 121648857 TGCCAGCCCAGCTG s rn3.chr10 22166084 14 - 110733352 TGCGAGACAGGCTC s fr1.chrUn 303308061 11 + 349519338 TACTA---CTGCTG a score=386.0 s hg17.chr17_random 2519528 18 + 2618010 TACCAGACCAGCTCCTGC s fr1.chrUn 303308061 15 + 349519338 TACTA---CTGCTGCTGC a score=391.0 s hg17.chr17_random 2519542 4 + 2618010 CTGC s fr1.chrUn 303308072 4 + 349519338 CTGC a score=1953.0 s hg17.chr17_random 2519542 4 + 2618010 CTGC s panTro1.chr19 42787984 4 - 82489036 CTGC s mm5.chr11 22386666 4 - 121648857 CTGT s fr1.chrUn 303308072 4 + 349519338 CTGC a score=1081.0 s hg17.chr17_random 2519546 11 + 2618010 -GGAACTGGCTG s canFam1.chr9 14298672 11 + 53642819 -GGGACTGGCTG s fr1.chrUn 303308076 11 + 349519338 TGCTACT-GCTG a score=5431.0 s hg17.chr17_random 2519546 11 + 2618010 -GGAACTGGCTG s panTro1.chr19 42787988 11 - 82489036 -GGAACTGGCTG s mm5.chr11 22386670 11 - 121648857 -GGAACTGGCAG s canFam1.chr9 14298672 11 + 53642819 -GGGACTGGCTG s fr1.chrUn 303308076 11 + 349519338 TGCTACT-GCTG a score=200704.0 s hg17.chr17_random 2519557 285 + 2618010 TGGCATTGGTGGTGGCATTGGCTATGGCCAGGAGGGCAGCAGTGGAGCTGTGAGCACCCGTATCAGGTGGTGCCGCCCAGACTGCCGTGTGGAGGGTACCTGCCTGCCCCCCTGCTG-CGTGGTGAGCTGCACACCCCCATCCTGCTGC--CAGCTGC-ACCACGCCGAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGTTGCCGCCCAGTCTGCTGCTGCTA---------------CTGCTCTG--------------------AGCCCACTTGTTGAAAACCTCCTTCTGCTGGGGATCCTGATAAGATGGC s panTro1.chr19 42787999 285 - 82489036 CGGCATTGGTGGTGGCATTGGCTATGGCCAGGAGGGCAGCAGTGGAGCTGTGAGCACCCGTATCAGGTGGTGCCGCCCAGACTGCCGTGTGGAGGGTACCTGCCTGCCTCCCTGCTG-TGTGGTTAGCTGCACACCCCCAACCTGCTGC--CAGCTGC-ACCACGCCCAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGTTGCCGCCCAGTCTGCTGCTGCTA---------------CTGCTCTG--------------------AGCCCACTTGTTGAAAACCTCCTTCTGCTGGGGATCCTGATAAGATGGC s mm5.chr11 22379826 297 - 121648857 TGGCTTTGGGGGTGGCATTGGCTGTGGCCAGGAGGGTGGCAGTGGAGGTGTGAGCTGCCGTGTTAGATGGTGCCGCCCTGACTGCCGCGTGGAGGGCACCTGCCTGCCCCCCTGCTG-TGTGGTGAGCTGCACACCCCCAACCTGCTGC--CAGCTGC-ACCATGCCCAGGCCTCCTGCTGCCGTCCATCCTACTGTGGACAGTCTTGCTGCCGCCCAGCATGCTGCTGCTACTGCTGCCAGCCCAGCTGCTCTG--------------------AGCCCAGCTGTTGAAAG---CCTTCTGGCAAGAATCTTAGGAAGATGAC s rn3.chr10 22166098 297 - 110733352 TGGCATCGGGGGTGGCATTGGCTATGGCCAGGGGAGTGGCAGTGGAGCCGTGAACTGCCGTGTTAGATGGTGCCGCCCTGACTGCCGTGTGGAGGGCACCTCCCTGCCCCCCTGCTG-TGTGGCGAGCTGTATACCCCCAACCTGCTGC--CAGCTGC-ACCATGCCCAGGCCTCCTGCTGCCGTCCATCCTACTGTGGACAGTCCTGCTGCCGTCCAGCCTGCTGCTGCTACTGCTGCCAGCCCAGCTGCTCCG--------------------AGCCCAGCTGTTGAAAG---CCTTCTGACAAGAATCTTAGGAAGATGAC s canFam1.chr9 14298683 302 + 53642819 TGGCATTGGTGG------------TGGCCAGGAGGGTGGCAGTGGAGCTATGAGCTGCCGAGTCAGGTGGTGCCGCCCTGACTGCCGCGTGGAGGACACCTGCCTGCCCCCCTGCTG-CGTGGTGAGCTGCACACCCCCAACCTGCTGC--CAGCTGC-ACCATGCCCAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTCCTACTGCTGCCAG-----CCCACCTGCTGCCAGCCCACCTGCTGCCAGTCTACTTGTTGAAAACCTCATTCTAA-AGGAATCCTGAGAAACTGGT s fr1.chrUn 303308087 253 + 349519338 TAGCTGCTGCTGCTGTAGCTGCTGCTGC--------------TGTAGCT----GCTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTGC------TGCTACTGCTGTAGCTGCTGCTGCTGT----AGCTG------------CTGCTGCTGTAGCTGCTACTACTGCTGCTGCTGCTGTAGCTGCTGCTGCTACTGCTGTAGCTGCTGCTGCTGCTGTAGCTGCTGCTGCTACTGCTGTAG------CTGCTGCT--------------------GCTGTAGCTGCTG-----CTGCTGCTGCTGTAGCTGCTGCTGCTGTAGC a score=206436.0 s hg17.chr17_random 2519842 653 + 2618010 ACCTTAAAACTAGCCAAATTAGAATCCT---AACAATCTTCTGAACTCCAGTACCTATAACTGGGCTTGCAACCTCTCATCACACAGCCACATAAATTCCCTAGGAAGTAAATTCATTTACAATGGAAGACCAAAAATTTTTCCTAGACCTGGTTGTCAGCCAAAGTCCTACAATGTGAAAAGAGTTAGATACTATTTTACTATAAATATCACCTGAAATATTTCAACAGTT-ATTGGGACTTAAATTTAATAAAAGT--TTTCATCTCTTCAATGAT---GAAGTTGTTGTTTGAACTTTCTTTGCTTTGGAATTTATTAACAATATTGGGGTACTGGGATTTTTCAAAATATCAA----CATGACATGACACTATGGTTTTTCTGTACTT--------TTGCTCTTTTAATGATGATATTTAACAG-CAATTTTCCTTTGTTTTACCATTAAATGGTCCAATATTT-TGCAGCCAAGACATATGATTAAAGGAAC-----------------------TTGACAACATTTAGGA------------------ACTGTTTCCTAAGGTCCTCTCATGTGCAAAGTGGTGGGCTAGGTATTCCAACAGAT--------------------------TGATTCAGCTTCTTGAGGTTTTGCCAAATCTATTCATTCATCCATTCATATATGAGGTTGTATACAATTATTTCTGTCCTCCAAGATATACAAAAGCATAATAAAAA s panTro1.chr19 42788284 653 - 82489036 ACCTTAAAACTAGCCAAATTAGAATCCT---AACAATCTTCTGAACTCCAGTACCTATAACTGGGCTTGCAACCTCTCATCACACAGCCACATAAATTCCCTAGGATGTAAATTCATTTACAATGGAAGACCAAAAATTTTTCCTAGACCTGGTTGTCAGCCAAAGTCCTACAATGTGAAAAGAGTTAGATACTATTTTACTATAAATATCACCTGAAATATTTCAACAGTT-ATTGGGACTTAAATTTAATAAAAGT--TTTCATCTCTTCAATGAT---GAAGTTGTTGTTTGAACTTTCTTTGCTTTGGAATTTATTAAGAATATTGGGGTACTGGGATTTTTCAAAATATCAA----CATGACATGACACTATGGTTTTTCTGTACTT--------TTGCTCTTTTAATGATGATATTTAACAG-CAATTTTCCTTTGTTTTACCATTAAATGGTCCAATATTT-TGCAGCCAAGACATATGATTAAAGGAAC-----------------------TTGACAACATTTAGGA------------------ACTGTTTCCTAAGGTCCTTTCATGTGCAAAGTGGTGGGCTAGGTATTCCAACAGAT--------------------------TGATTCAGCTTCTTGAGGTTTTGCCAAATCTATTCATTCATCCATTCATATATGAGGTTGTATACAATTATTTCTGTCCTCTAAGATATACAAAAGCATAATAAAAA s mm5.chr11 22380123 615 - 121648857 ACTTCAAAATGAACT-AATTACAACCCTTAAAATAATCTTCTAAACTTCAGTATTGATAACTCAG----------CTATTGACACGGCTACATAATTTCCC-AGGAGGTAAATTCATTTGGGGTGGAAGAGCCAACATCTTTGTT-GGCTTGAACACCAACAAAAGACCCACTGTGTGGAAAGGAGTGTATACTACATTACTATAAATATTACCAGAACTACTTCAATAGCCAATTGGGATTTGTATTTAATAAAAAGTATTTTGTCTCTTCAATGGT-AAAAAGTTATTGTCAATGCTTTCTGTTCCTTGAAATATTTTAATAATACT-GAGTATTGGATTCTTTCAAAATCTCA---------ATAAGCCACTACAGTTTTTC--------------------ATTTTAATAATTCTCTTT--------------CTTTGATTCTCC-CTCAATGGCCCATTATTTCTGCAACTGAAATACATCACCCACAAAAC-----------------------ACAACAATAATTAAGACACCTGAACAGAGTGGCCCCTGTGTACCAAAGTCAGTTT---TACAAAGAGGAAGTTTGTGTCCT--------------------------------------TTTGGTGTCTAG-GGCATTGCCAAACC---CCTCTCGT-CACTCAAATGTGAGTCTACATCTGATTCTTTCAAGCATCAAAGGGATTCTGAGGTGTGATGCAGA s rn3.chr10 22166395 608 - 110733352 ACTTCAAAATGATCC-AACTAGAAGCCT-AAAAAAGTCTTCTAAATTTCAGAATTGATAACTCAG----------CTATTGTAACAGCTACGTAATTTCGC-AGGAGGTAAATTCATTTGGGGTGGAAGAGCCAACTTCGTT----GACTTGAACTCCAACAAAAGGCCCACACTGTGGAGAGGGATGGGTAAAACATTACTATAAATTTTACCAGAACTACTTCAATAGCCAACTGGGATTTGTATTTAATAAAATGCATTTGGTCTCTTCAATGATTAAAAAGTTATTGTCAATGCTTTCTTT-TTTTGGAATATTTTAATAAT---------TTGGAATTTTTCAAAATCTCA---------ATAAGCCACTGCAGTTCCTTACCCTTTAAATGTGGTTGTTCTTTTAATAATTCTCT----------------CTTTGATTTCCC-CTAAATGGCTCATTATTTCTGCAACCAA-ATATATCACTAAGAAAAC--------------------------ACAATAATTAAGA-----CACTCACCTGGCCCCTGTGTTCCAAAGTTT-------TACAAAGAGGACGTTTGAGTCAT--------------------------------------TTTGATGTCCGA-GGCATTGTCAAGCC---TCTCTAGT-CACTCAAACGTGAGTCTACAGATGATTGTTGCGAGCATCAAAGGGATACTAAGGTGTAATGTAGA s canFam1.chr9 14298985 693 + 53642819 ACTTCAAAATGAGCCAATGTAGAGTCCC---AACAA-CATCTGAGCTCTAATACTCAAAATCCAGCTTGCAAACTCTTATCACATGGCTACATAATTTTCCTAAGATGTGAATTAATTTATAATCGAAGACCAAAAATATTTCATAAACGTCGATATGAACAGAAGTCCTACAAGTTTAAGAGAAATATGTAAAATTTTACTATAAATGT---CTGAAGCAGCTCAACAGCTCTTTGGAGTTGGGATTTAATAAAA----TTTTTATTCTTCAGTGAT---GTAGTCATTGTTGGAGCTTTCTTTTCTTTGGAATTTTTTATTGCTATTGGGGTACTTGGATTTTTCAAAATCTCAATAACTATGCTATGACAGTATGGTTTTTCTTAATTT--------TTGTCCTGTT-ATAAAGGTCTTTGAAAGATGGTTTTTCTTTGTTTTACCATTAAATAGTCTAATATC--TGCAGCCAAAATCTATGATTAAAAGAATCTATCAGAAAAAAAAAAAAGAATCTATCAGTATTTAAGA------------------ATTATTCCCCAAGGTCCTCACATATGCAAACTGATGGGCTAGGTGTTCCAGAAGATCAATTTTACAAAAAGGAATTTTTATGTCATTTAGCTTCTTGAGGTGTTACTAAATC---TTTTTATTTCAGTC--ACATGACTCAGTGTACAATTCTTTCAATTATCAAGGGTATA--AAAGGGTAATACATA a score=-556.0 s hg17.chr17_random 2520495 2 + 2618010 -TT s panTro1.chr19 42788937 2 - 82489036 -TT s canFam1.chr9 14299678 2 + 53642819 AT- a score=-369.0 s hg17.chr17_random 2520495 2 + 2618010 -TT s canFam1.chr9 14299678 2 + 53642819 AT- a score=7654.0 s hg17.chr17_random 2520497 31 + 2618010 GTGAAAGAATACAAACACAAGATTACAGAGT s panTro1.chr19 42788939 31 - 82489036 GTGAAAGAATACAAACACAAGATTATAGAGT s rn3.chr10 22167003 31 - 110733352 ACGAAAGACCATAAACGCTGGCTGGCAAAGT s canFam1.chr9 14299680 31 + 53642819 TGGAAAGACAGTAAACATAAGATTTCAAATT a score=1506.0 s hg17.chr17_random 2520528 8 + 2618010 AATAGCAT s panTro1.chr19 42788970 8 - 82489036 AATAGCAC s rn3.chr10 22167034 8 - 110733352 AACAGCGT a score=94043.0 s hg17.chr17_random 2520536 1040 + 2618010 GTAACGAATATACACAtttcattcaaggtctaggctcataactcccatagcccttttattgatgttagggcactttacacttcagaagcaggcctcagaaaacagaatctctctctctctc--------------gctctcgctcactcacttgctcTTGCTCTCTCTCTCtctct--ggccttctccccacctcttttcacctgctccttttactcctcaaggcaagaatcttcccccactgttcttggcactggccatcaagatattctcctacctaccttgcctgattgtaggtcataagatccccatttcagaagaggttctgccccatgccctggaggaaggaaggctgcatagagagaccaagaaggatctgacagacagg----------tttcatcactcactctactaacattagatcatactctttttgtccaatcacgtttctaatggttgtccatcatgcccatccactgaagtccccgtaaaatgttcaaaaaaaaaaaaaaaaaaaaacccacagagtttgaggagcttccagatagctgaatgtgtggaggttcctggaatgtgctgttcccagagaggttatgaaagctcctcataccccttcccccacacctcaccctatgcatctcttcttctgtgccatttgtaattgtctttataataaaccaataagctaaatgtttccctgagtcctgggacctgccctagcacattcatcaaacttgagggtgtcatggaattcccaatttatggctggttggtcagaagcacaggcaaaacaacctggagcttgtgcttggcactggaagtagggggcagtcttacagaactgagccctccccctgtaaaacctgacactatcaccaagtaaatagcgttagaatggaattggagtggaaaacatgcagctggtatctgctgcagaatttatttccttgcttcttgatggggagaaatccccacacattagccacagaaatcttctgtgttgattgttgttgagtgagagagtagaaagaacatttgagtgtgttttTTTTT-CCTTCTACCC s panTro1.chr19 42788978 1063 - 82489036 GTAACAAATATACACAtttcattcaaggtctaggctcataactcccatagcccttttattgatgttagggcactttacacttcagaagcaggcctcagaaaacagaatctctctctctctctctctcgctctctcactctcgctcactcacttgctcttgctctctctctctctctctggccttctccccacctcttttcacctgctccttttactcctcaaggcaagaatcttcccccactgttcttggcactggccgtcaagatattctcctacctaccttgcctgattttaggtcataagatccccatttcagaagaggttctgccccatgccctggaggaaggaaggctgcatagagagaccaagaaggatctgacagacaggccttactgggtttcaccactcactctactaacattagatcatactctttttgtccaatcacgtttctaatggttgtccatcatgcccatccactgaagtccccataaaatgttcaaaaaaaaaaaaaaaaaa----ccacagagtttgaggagcttccagatagctgaatgtgtggaggttcctggaatgtactgttcccagagaggttatgaaagctcctcataccccttcccccacacctcaccctatgcatctcttcttctgtaccgtttgtaattgtctttataataaaccaataagctaaatgtttccctgagtcctgggacctgctctagcacattcatcaaacttgagggtgtcatggaattcccaatttatggctggttggtcagaagcacaggcaaaacaacctggagcttgtgcttggcactggaagtagggggcagtcttacagaactgagccctccccctgtaaaacctgacactatcaccaagtaaatagcgttagaatggaattggagtggaaaacacgcagctggtatctgctgcagaatttatttccttgcttcttgatggggagaaatccccacacattagccacagaaatcttctgtgttgattgttgttgagtgagagagtagaaagaacatttgagtgtgttttTTTTTTCCTTCTACCC a score=11583.0 s hg17.chr17_random 2521576 91 + 2618010 AATAGCATAAGATGTAAAAATAGCTTATGCTATtgggtagaagaacaaaaagctaaatcaagactcctgagttctagtcccaactttgtaa s panTro1.chr19 42790041 91 - 82489036 AATAGCATAAGATGTAAAAATAGCTTATGCTATtgggtagaagaacaaaaagctaaatcaagactcctgagttctagtcccaactttgtaa s canFam1.chr9 14299711 49 + 53642819 ACTAGCATAAGATGTAAAGGCA------------------------------------------Tcctgagttcttgtcactacttggtaa a score=52566.0 s hg17.chr17_random 2521667 208 + 2618010 ctagctatccatgaatccttgagcaagtcccttcactt-gcctgggtacctatttctaatttgggaaatgagagaattga--gtcattactgacaacatcccttccagGCATAAGAGGGTAGATAATTTCCTAAACAGGCTACA---CACTGACCAGTAATAGCTTCAGATGCCCAAAGAGGAAAAAATATACAGTGGTCAAATTATGTtgtat s panTro1.chr19 42790132 208 - 82489036 ctagctatccatgaatccttgagcaagtcccttcactt-gcctgggtacctatttctaatttgggaaatgagagaattga--gtcattactgacaacatcccttccagGCATAAGAGGGTAGATAATTTCCTAAACAGGCTACA---CACTGACCAGTAATAGCTTCAGATGCCCAAAGAGGAAAAAATATACAGTGGTCAAATTATGTtgtat s mm5.chr11 22380856 184 - 121648857 CCAATGATCCTTGACTCCTTGAGTAAGTCACTTCACTTGGCCTGGGCAACTACTTCTCATCTGG---------AAACTGT--GTTAT----------ATCCCTTCCATGGAGAGATATATAGATCATCTAATAAACA-GTAGCA---TGCTGC----TATTATCCTCAGACATCCACATAGG-AAAAGTACTCAATGACCCAATAATATCACAA s canFam1.chr9 14299760 210 + 53642819 ctaagaatctatggattcttgagcaaggccttttgcct-gcctgggcaccagttgaaagcctggaaaataagagaattgactttcattgcttacaacatccctctcagGCA---GAGGATAGATTATTTCCTAAACAGGTAATAATGCACTGACAATTAGTCTCTTCAGATACCCAATAGGGAAAAAGTATTCAGTGGTCAAATAATGTTGCAT a score=137.0 s hg17.chr17_random 2521875 7 + 2618010 --gctttat s panTro1.chr19 42790340 7 - 82489036 --gctttat s mm5.chr11 22381040 7 - 121648857 --GCTTTAT s rn3.chr10 22168313 5 - 110733352 --ACTGT-- s canFam1.chr9 14299970 7 + 53642819 GCATTTT-- a score=8812.0 s hg17.chr17_random 2521882 42 + 2618010 cacctttttgcaagtt---tataaagccacactggaatattaaag s panTro1.chr19 42790347 42 - 82489036 cacctttttgcaagtt---tataaagccacactggaatattaaag s rn3.chr10 22168318 42 - 110733352 ---CATCTTGAAGATTTTCTAAGAAGTTGCTTTAGAACATTAACA s canFam1.chr9 14299977 42 + 53642819 CACCATTTTAAGGTTT--ATATAAAG-CACAATAGAATATTAAAG a score=3771.0 s hg17.chr17_random 2521924 39 + 2618010 ggactgagatggcctgcaataaataaagctCTACAACCA s panTro1.chr19 42790389 39 - 82489036 ggactgagatgccctgcaataaagaaagctCTACAACCA s rn3.chr10 22168360 27 - 110733352 AGGCCATGTTGTCTTGCAAGAA------------GACCA a score=28102.0 s hg17.chr17_random 2521963 305 + 2618010 GTggccgggctcagtggctcacacctgtcatcctagcacttccggaggctgaggcaggtggatcacctgaggtcacaagttcgagaccagcatgacaaacatggcaaaaccccgtgtctactaaaaatacaaaaattagccaggcgtcatggcgggcacctgtggtcttacaggctgaagcaggagaatcacttgaatccaggaggtggaggttgcggtgaaacaagatcgcgccactacactacagcctgggtgacagagtgagagtccatctcaaaaaaaaaaaaaaagaaaaagaaaagaaa s panTro1.chr19 42790428 305 - 82489036 GTggctgggctcagtggctcacacctgtcatcctagcacttccggaggctgaggcaggtggatcacctgaggtcacaagttcgagaccagcatgacaaacatggcaaaaccccgtgtctactaaaaatacaaaaattagccaggcgtcatggcgggcacctgtggtcttacaggctgaagcaggagaatcacttgaatccaggaggtggaggttgcggtgaaacaagatcacgccactacactacagcctgggtgacagagtgggagtccatctcaaaaaaaaaaaaaaaaaagaaaagaaaaaa a score=1150.0 s hg17.chr17_random 2522268 6 + 2618010 AAAAAA s panTro1.chr19 42790733 6 - 82489036 aaaaaa s mm5.chr11 22382202 6 - 121648857 AGAAGA a score=284.0 s hg17.chr17_random 2522274 5 + 2618010 ACAAC s panTro1.chr19 42790739 5 - 82489036 aCAAC s mm5.chr11 22382208 5 - 121648857 TCATT s canFam1.chr9 14300019 5 + 53642819 AAAGC a score=152140.0 s hg17.chr17_random 2522279 410 + 2618010 TCTATAACCATCACTCCCAAACTA---ACTTAGCCAGAAAACTCTCTATTTTTATGTTACCTGTTAACACCCTGTAACACAAATACTCCTCAAAATATACTTTGAAAAATGATGAAAGGGAGT--ATCAA---------CTGATGTTTTTATAATACCTGTATAATCTTCTTATGTATTGTGAAGCAGAAAATAAATGTTCACTGCAAGGATGGATTTAAAT--------------------ACTGTCACTGTTCTTATTCTAATTTTC--AGAGAGAGTTCTAGA-TGAAGCAAGCATTAAAT-AAAAGACGCATAGTGAGG-CTTTCATTCCAAGGGATAAA-ATCTTTTGTCATTaaatcaaagtggtgagccagtgcctgggggtagaggggtatgggaagtgattgcttaaaggtcatgggggtgttcttctgcgatgatggaaa s panTro1.chr19 42790744 428 - 82489036 TCTATAACCATCACTCCCAAACTA---ACTTAGCCAGAAAACTCTCTATTTTTATGTTACCTGTTAACACCCTGTAACACAAATACTCCTCAAAATATACTTTGAAAAATGATGAAAGGGAGT--ATCAA---------CTGATGTTTTTATAATACCTGTATAATCTTCTTATGTATTGTGAAGCAGAAAATAAATGTTCACTGCAAGGATGGATTTAAATGAATGTGATGTTGGCTATATACTGTCACCGTTCTTATTCTAATTTTC--AGAGAGAGTTCTAGA-TGAAGCAAGCATTAAAT-AAAAGATGCATAGTGAGG-CTTTCATTCCAAGGGATAAA---CTTTCGTCATTaaatcaaagtggtgagccagtgcctgggggtagaggggtatgggaagtgattgcttaaaggtcatgggggtgttcttctgcgatgatggaaa s mm5.chr11 22382213 406 - 121648857 TCTAC--CCATCGTGCCCAAACTGAGTAGTAAGCCAGGATGTTTACTGTTCTTATCTTACTTGTTAACATCTTGTA--ACTAGTGTTCCTAGATATGTACTTTGGGAAATGATGAAAGGAGCT--ATCAGACTACCAATCTGCAGTTTT----GTACCTATACAATCCTCTCGAGTCCCATGAGGCAGAATACAG------AACACAATCTTGG--TCACAT--------------------CCTGTCACCATTCTTGCCCTAATCTCC--AAAGAGTCTTCTAGAGCCAAGCAAGCATGAAAC-AGAAGATTCATAATGGAG-CTTCTATGCCATAGGATAAAAATCTTTAGTCATAGAATCATCATGGTGAACTACAGGTCATGGTTAGCAAGGTACAGCAAGTGATT-TTTGAAGGTTAT-AGGGTATTCTTCTGGGGTAATAAAAA s rn3.chr10 22168387 399 - 110733352 TTTCTAGCCATTAGGCTCGAACTG---AGTAAGCCAGGACGTTTGCTGCTCTTAT----CTAGTTAACATCTTGTA--ACTAGCGTTCGTAGATATGTACTTTGGAAAATGATGAAAGGAAGTTCATCAGTCTACCAATCTGCATTTTT----GAACCTATACAATCCTCTCAAGTCCCGTGAGGCAGAATACAG------AAT-----CTTGG--TCACAT--------------------CCTGTCACCATTCTTTCCCTAATCTCC--AAAGAGTCTTCTAGAACAAAGCAAGCCTGAAAC-AGAAGATACATCATGGAG-CTTCTGTTCCATGGGATAAAAATCTTTAGTCATAGAATCAACAAGATGAACTACAGGTCATGATTAGTAGGGCACCGCAAGGGATTGCTTAAAGGTTAA-AGGGTGTTCTTCTGAGGTAACAAAAA s canFam1.chr9 14300024 403 + 53642819 TCTAAAACTATTATTCCCAAGTTG---ATTTAATCAGGGAATCTTCCATTTATTTATTATTAACTAACATCCTGTAACACTAGTATTCTTCAAAATATACTTTGGAAAATGATGAAAGGGAAT--TTCAA---------CTAATGTTTCTCTAACATCTATACAGTTCTTTCATGTATTGTTAAGTAGAAAACAAATATTCATTACAGGAAGGG-TTTAAGCAAGCATGATACTGGCATTC-ACTATGTCCAGTCTTATTCTAATCTCCAGAGAGAGAGGTCTAGAATGAAGCATGGATGAAATAAAAAAACACATAGTAAGACCTTCCATTTTAATGGATAaa----------------atcaaagtggtaaatgagtggcaggagataaagggaaatggggaatgatt-actaaagattat--------------tagctgatgaaaa a score=-134.0 s hg17.chr17_random 2522689 9 + 2618010 a-gtttttga s panTro1.chr19 42791172 9 - 82489036 a-gtttttga s mm5.chr11 22382619 10 - 121648857 GCACTTTTGA s canFam1.chr9 14300427 8 + 53642819 -agttttta- a score=3126.0 s hg17.chr17_random 2522698 32 + 2618010 agctagagagagatgatg----------------------------------------ttgcccaatattat s panTro1.chr19 42791181 32 - 82489036 aactagagggagatgatg----------------------------------------ttgcccaacattat s mm5.chr11 22383091 72 - 121648857 AGCTAGAGGACAATAATGAAGAGTCCTCATAGTGCCATCTGGGCTCCCCCGTAGGCACATGCCTAGGAATGT s canFam1.chr9 14300435 35 + 53642819 agctagagaaagg-aatg------------------------------------gcggttgcaaaacattat a score=102045.0 s hg17.chr17_random 2522730 330 + 2618010 aaatatactatatgtcactcaattatacactttaaaatggttaattgtaggttatgtga--atttaacctccatttta-aa----aaATCAAAAGAAcaggacctctgctagcacaactttaaaagaattag--gaaaaggcaccactttggag--aagatacagacagaggagtgcacagtttgttgagcctccagc----ttgatgtaagaaataatatgctccttcctctgagtggacagagccaca-------catcagggcgcgacctgtacatctatacacaatggccctACAATGTAGTCAACATTTTATTCCCCTCATTTAGAGCTCTGTTGTCTCTGAGAGGG--------- s panTro1.chr19 42791213 337 - 82489036 aaatatactatatgtcactcaattatacactttaaaatggttaattgtaggttatgtga--atttaacctccatttta-aa----aaATCAAAAGAATAGGACCTCTGCTAGCACAACTTTAAAAGAATTAG--GAAAAGGCACCACTTTGGAG--AAGATACAGACAGGGGGGTGCACAGTTTGTTGAGCCTCCAGC----TTGATGTAAGAAATAATATGCTCCTTCCTCTGAGTGGACAGAGCCACAAGCCACACATCAGGGCGCGACCTGTACATCTATACACAATGGCCCTACGATGTAGTCAACATTTTATTCCCCTCATTTAGAGCTCTGTTGTCTCTGAGAGGG--------- s mm5.chr11 22383210 326 - 121648857 AAATGCACTAAACGTCACTTTATTGTACACATTTAAATAGTT-ATTTCACATTATATGATTTTTTTTCCTTCAATTTATTA----AAAGGAGAGGAGTGAGGCCTCCA-TAGTACAACTTTACAACAATCAGAAAAAAAAACGCCATCTTGACATTAACATATACCCAAGGAA---CACGGCTTTTCAGACCTACAGTACA-TTGGCATGAAGAATGATATGTGCCTTCTTCTGTGTGAACACAGCCCCA-------CATCCAGAAACAACCTGTGCTT--------GGTGAGGTTACAACCCAATCAACGTCCCA-GATCCTAACATATAGGTCTCCTGACTCCCAACTGG--------- s rn3.chr10 22169524 307 - 110733352 AAATGCACCAAATGTCACTTTATTGTGTA--TTTAAATGGTT-TTTTCACATTATATGA--GTTTTCCCTCAATTTAT----------------GAGTGAGACCCCTC-TAGTACAACTTTATAACAATCAG----AAAAACACCACCTTGACA--TCAGCATACCCAAAGAA---CACAGTTTATCAGACCTACAGTACATTGGGCGTGAAGAA--ATATGTTCCTTCTTCTGTATGAACACAGCTCCA-------CATCCGGAAACAACTTGTACATCTGTACTTGCTGGGCTTATAACATGGTCACTATCCCA-GATCC----ATATATGTCTCTTGACTCCCAACGAG--------- s canFam1.chr9 14300470 343 + 53642819 ggatgcactaaaagtcattcaattgtacattttaaaatggtttagtatacattatgtga--atttcacttcaacttaa-aaaaCTAAGTCAAAGGCATGGGGTTTCCACTAACACGAC-TTACCAGCATTAG-AAAAAAAGCACCACCTTTAGG--TAGACACAGTCTATAGAATATACAGCTTACTGagcctataggatc-tttgtgtgaaaaaggct---ctccctcctctgagaggacagagcctcc-------catcagggcacaACCTACACATTCATACACAATGTGTCTAAAACATGTTCAACACTCTACGTCCCTCATATACCACTCTCTTAGCTTCCAACAGATTAGGAAGA a score=19196.0 s hg17.chr17_random 2523060 82 + 2618010 TTTAGGTTGGATGTACCTTTTAATTAAAAGGACTTTGGCTCAGAAGCACCCCAAAAAATCCTGGTTGGCATTCAGGAGGGAA s panTro1.chr19 42791550 82 - 82489036 TTTAGGTTGGATGTACTTTTTAATTAAAAGGACTTTGGCTCAGCAGCACCCCAAAAAAGCCTGGTTGGCATTCAGGAGGGAA s rn3.chr10 22169840 78 - 110733352 TTAAGAGTTGCAACATCTTTCACTTAGAAGAACATTAACTCAGAGGCA-TCAAAAGGATATAGGTTGGTGTTTGAAA---AA s canFam1.chr9 14300813 79 + 53642819 CTTAGGTTGGATGCACCTTTTACTTAGAAGGGCTTCAGCTT-GAAGCA--CCAAAAGAGCCAAGTGGACATGCAGAAGAGAA a score=33510.0 s hg17.chr17_random 2523142 145 + 2618010 GAGATAGATCTTGTGACTTGGCTTAGGATAAAAGTTGGTAGTAAGAGGAGGTCCTTGAAGTTTATGTGTTATCTGGTCTAGATTACTAGGATGGAAGCCCAGA-GCAGAAGCACAGAAGCCCTACATAGGAATGTTGTATTCATTT s panTro1.chr19 42791632 145 - 82489036 GAGATAGATCTTGTGACTTGGCTTAGGATAAAAGTTGGTAGTAAGAGGAGGTCCTTGAAGTTTATGTGTTATCTGGTCTAGATTACTAGGATGGAAGCCCAGA-GCAGAAGCACAGAAGCCCTACATAGGAATGTTGTATTCATTT s mm5.chr11 22383789 146 - 121648857 AAGGAAGGCCTCATTGCTTGATTAAGGCTAGAAAGCTGGGATGCAAGGAAGTCCTTGAGGCTTATTCGTTGCCCAATTGAGGTCACTGGGACGAATTACAAAACACAGGAGCACAGATGCCCTAAGCAAGGATGCTGTGCTCATGT s rn3.chr10 22169921 145 - 110733352 -AAGGAGACCTTATTACTTGATTAAGGCTAGAGAGTTGGGGTGAGAGGAAGTCATTGAGGCTTTTCTGTTGCCCAGTTGAGGTCACTGGGATGGATTACAATCCACAGCAGCATAGATGCCCTAGGCAAGGATGTTCTAAGCAGTT s canFam1.chr9 14300892 48 + 53642819 ---GAAGATCTTATTACTTGATATAGAATAAAAAATGG------------------------------------------------------------------------------------------GGGATGTTCAACT----- a score=40444.0 s hg17.chr17_random 2523287 189 + 2618010 GACTGGTACATCAATCAT---GTTTTATTTCTCGAGAATCTAAGTAAGGCAGTCACAACCGAATTAGAGAACTAGTAAAACGGAGATGAAGAAATTGGGAGAATCCCCAGAACTTGTAACTAGAAAACCAGAACCATGATATCTTAAAGAAAAATAATTTCAAACATTAGTGTCTGTGTTAAAC-------CAAAGCCA s panTro1.chr19 42791777 189 - 82489036 GACTGGTACATCAATCAT---GTTTTATTTCTCGAGAATCTAACTAAGGCAGTCACAACTGAATTAGAGAACAAGTAAAATGGAGATGAAGAAATTGGGAGAATCCCCAAAACTTGTAACTAGAAAACCAGAACCATGATATCTTAAAGAAAAATAATTTCAAACATTAGTATCTGTGTTAAAC-------CAAAGCCA s mm5.chr11 22383935 173 - 121648857 GGCTCGTGTATCAACCACCAAGCCACATCCTTCAGAGATCTAA-------AATCA-GACTGGCTTAGAGTCCTGGTGAAATGAACATGAAGAAAG-----------CCAGAAC-----ACTCCGAAA-TAGGACTGTGCCATCTTAAACAGAAACCACTCAAAACATTAGGA-CACTCTTAGACAGAGAGTCAAAGTTA s canFam1.chr9 14300940 182 + 53642819 GGTTGGCATATCAACCAT---ATCTTATCACTCAGGA----AAGTAAGGCAGAGGCAACTGAATTAGAGAACTAGTAAAATGGACTTTAAGGAATTGAGAGAAGCCCCAAAATTTACAATAAGAAACTCAGAACCTTGATCTCTTAAAGAAAAATAACTCAATATATAAGTATCTA---TAAAC-------AGAAGGTA a score=1152.0 s hg17.chr17_random 2523476 15 + 2618010 CGTTCAGGAATAACA s panTro1.chr19 42791966 15 - 82489036 CATTCAGGAATAACA s mm5.chr11 22384108 15 - 121648857 AAAGAAACAAAAACA a score=2625.0 s hg17.chr17_random 2523491 6 + 2618010 GACAAA s panTro1.chr19 42791981 6 - 82489036 GACAAA s mm5.chr11 22384123 6 - 121648857 AACAAA s rn3.chr10 22170224 6 - 110733352 GGCAAA a score=29142.0 s hg17.chr17_random 2523497 87 + 2618010 C----------ACATTCTTTCTTCTTATGGTACTGGAATGGTCTACAGCCCATCACTTAAATGAAGTAATGAATGCCAGAGGGAATCAGCACAGTAA s panTro1.chr19 42791987 87 - 82489036 C----------ACATTCTTTCTTCTTATGGTACTGGAATGGTCTAGAGCCCATCACTTAAATGAAGTAATGAAAGCCAGAGGGAATCAGCACAGTAA s mm5.chr11 22384129 90 - 121648857 TAGCTAAAAAAAAGTACCTTGTTCATA---TAATGGTGTGGTCTGT-GCCCTCCA---AGATGATGTAGTGGAATCTGAAGAGAATAAGAAAGATAA s rn3.chr10 22170230 80 - 110733352 G-------------TCCCTTGTTCTTGTTGTAATGATGTGGTCTGC-ACCCTCCA---AGATGACGTAGTGGAAGCTAAAGAGAATAAGAAGGATAA s canFam1.chr9 14301364 86 + 53642819 ----------CACATCCTTTCTTCTTTTGGTACTACTGT-GTCTGGGCCCCATCACTTAAATGAAGTAATGAAAACCAAAGAGAATAAGCAAAGTAA a score=61.0 s hg17.chr17_random 2523584 97 + 2618010 TAAGaaat-gtggtatatacac----------------------------acaacgga---atac-tattgagtctataaaaagcaggaaat---------------tcgg---------tcacatattacaacataccta--------aacttgaaggata- s panTro1.chr19 42792074 97 - 82489036 TAAGaaat-gtggtatatacac----------------------------acaacgga---atac-tattgagtctatacaaagcaggaaat---------------tcgg---------tcacatattacaacataccta--------aacttgaaggata- s rn3.chr10 22170314 140 - 110733352 TATGACATCATTGTCCAGACACA------TGCATTTCCCTTT------AGACCACAGATGCAAGT-TCTTGTATCCAAAAAGGATAGAAAATCTACAAAGAAAAGCATCGT---------GAATATTTTTTAATATTTCCATGAAAATCAATACAGAAGAAA- s canFam1.chr9 14301450 159 + 53642819 --TAAAATAGTTTTAAATGTAAAATGACTGGCATTCTTTTCTCAAAGAAGACCACAGATAGAGATATCCAGCATTTAAACAGGACATAAAATCTACACAGAAACA--TCATGAATGATTATAACTTCTTACTCTATTTGTATGAGAACCAATCAAGAAGAAAT a score=35865.0 s hg17.chr17_random 2523681 104 + 2618010 taatgtaa--agtgaaataaAATAAATTTCATT----------TTCTTAATTTACTTAGAGGAGGTAAGGGAATGTTCAGATTAGTCTTCGTTCTGTGGCACAGGA-----GTCAAATTCT s panTro1.chr19 42792171 104 - 82489036 ttatgtaa--agtgaaataaAATAAATTTCATT----------TTCTTAATGTACTTAGAGGAGGTAAGGGAATGTTCAGATTAGTCTTCGTTCTGTGGCACAGGA-----GTCAAATTCT s mm5.chr11 22384381 114 - 121648857 TGGTAGAA--AGAAAAAAAAAAGAAGTCTGGTTACATCCGGTGTTCTTGATTTATTCAAGGCTGGTGAGGGAATGTTCAGACTCGGCTTCACCCTGTGACAGAGAA-----GGAGAGCTCT s rn3.chr10 22170461 114 - 110733352 TAGTG------GTAGAAAAAAAGAAGTCCGGTTACCTCCATG-TTCCTGATTTATTTCAGGCTGGTCAGGAGATGTTTAAACTCAGCTTCACCTTGTGACAGAGGGGAGCTGTCAAATTTT s canFam1.chr9 14301609 97 + 53642819 GGATTTAAGCGGTAGGAGaaaataa-ttttatt----------ttcttaatttattt-GGGAAGGTAAGGGAATGTTCAGATTTG-------TCTGTGGCAGAGGA-----GTAGAATTCT a score=5757.0 s hg17.chr17_random 2523785 19 + 2618010 CAAG---TAAGTGTCATACCTT s panTro1.chr19 42792275 19 - 82489036 CAAG---TAAGTGTCATACCTT s mm5.chr11 22384495 22 - 121648857 CAAATTTTGAGTGACAGGTTTT s canFam1.chr9 14301706 22 + 53642819 CAAATTTTAAGTGTCATACCTT a score=2109.0 s hg17.chr17_random 2523804 7 + 2618010 AAATTTT s panTro1.chr19 42792294 7 - 82489036 AAATTTT s mm5.chr11 22384517 7 - 121648857 CGACTTT s canFam1.chr9 14302205 7 + 53642819 AAGTTTT a score=1952.0 s hg17.chr17_random 2523811 13 + 2618010 GCATTGAGG-AAGA s panTro1.chr19 42792301 13 - 82489036 GCATTGAGG-AAGA s mm5.chr11 22384713 13 - 121648857 TCATGAAAG-TAGA s canFam1.chr9 14302212 14 + 53642819 GCACCAATGTTAGA a score=114582.0 s hg17.chr17_random 2523824 251 + 2618010 TGTTGAAAATAGTGCCACAGTAGAAAAGCCCAGAAAGGGAGAACTGATATGCAACGCCACTGTCTCCAGTGCTCTTATCAATAATGTATTTCAGGTCCTCAGATATCTGAGCCTTTTGCAAAAGGAGATACATCTGTTTAGTATCAAAGATTCTGCTAAATTTAGATC------TGAATTAAATAGCTCCCGAGATTGTTGTCATGACACACCCACGTATTTCAAGCATCCAACATAAAAAATATTAGCTAATCAAA s panTro1.chr19 42792314 251 - 82489036 TGTTGAAAATAGTGCCACAGTAGAAAAGCCCAGAAAGGGAGAACTGATATGCAACGCCACTGTCTCCAGTGCTCTTATCAATAATGTATTTCAAGTCCTCAGATATCTGAGCCTTTTGCAAAAGGAGACACATCTGTTTAGTATCAAAGATTCTGCTAAATTTAGATC------TGAATTAAATAGCTCCTGAGATTGTTGTCATGACACATCCACGTATTTCAAGCATCCAACATAAAAAATATTAGCTAATCAAA s mm5.chr11 22384740 236 - 121648857 TGTTAAAAACGGTGCCA-AGTAGAAAAGTCCAGAAACAATAATGCCACACATAATGTCATTATCTCCAGGGCTTTTATCAACAATGCACTGCAACATCTTAAACACCC----------------GAGATCAGTATCTGTAGTATCAAGCATCCTGCTGAATTCAAATTTCATCATGAATGAAATAGTCCCTGAGATGGTTATCAGGCCAC--CTGCATATTTCAAGCACTTAAAGTGAAAA--AATACCCAACCAAA s rn3.chr10 22170812 236 - 110733352 TGTTAAAAACGGTGCCA-AGTAGAAAAGTCCAGAAACAATAATGCCGTGCACAATGACATTATCTCCAGGGCTTTTATCAACAAGGCAGTGCAACATCTTAAACACCC----------------AAGATCAGTATCTTTAGTACCAAGCATCCTGCTGATTTTGAATTTCAGCGTGAATTAAATGGTCCCCAAGATTGTTATCAGGACAC--CTGCACATTGCCAGCGCTTAGAGTAAAAA--AGTACCTAACCAAA s canFam1.chr9 14302226 249 + 53642819 TGCTAAAAACAGTGCCACACCAGAAAAGTACAGAAATAGAGATTTAACCAACAACATTACTATCTCCAGTGCCTTTATCAG-GAGGTATTTCAACTCCTCAAACATCTGAATTGTTTGCAAGGGGAGATAAATGTTTTTAGTATCAGAGATTCTACTGAATTTAAATA------TGAATTAAATAGCTCCTGAGATTGTAATGGTGACAAACCTACATATTCCAAACATCCAAGGTGGAAAA-ATTAGCTAATCAAA a score=2769.0 s hg17.chr17_random 2524075 6 + 2618010 GAATCT s panTro1.chr19 42792565 6 - 82489036 GAATCT s rn3.chr10 22171048 6 - 110733352 GAAGCT s canFam1.chr9 14302475 6 + 53642819 GAATCT a score=119304.0 s hg17.chr17_random 2524081 702 + 2618010 GTGATGTAGCTTTGCTTA---AGAAGAAGCAAGGAATTCACAAAGAATCATATCTTTTAAACC-AAATTTGATGTGGGATTTGAAAATATGTCTTAATTCTGACTCAGAAAGAGTTATGATGTAAACTCAAAGCTGTCATTTCTAGAGAAGCAGAACT-ACCACTTGGTGTTCTGGTTCAAAATCCAAGAGTAGCATCGTAACTTGCATTTCTCAGTAAT-GAACCCATACTCCATGGAGGCCTGGTCACCTTTTATTGCATCTAAACAAAACCTTTATATTCACCGTCATCAGCTGTCTCATTCAAATTATATAAACTTTCCAGTTCACTGGATTAGTCTCTAATATCTATAAT----AAACTGCATACAGCCGATCTAACACTCTGTAGTAAATCACATACTCCAGTATTAATATGTTAAAAACTATAATTTTATGCAGTTAAAAAATCTAAATCTATAGAATATCCTAAGATAAAAGATGAGACAAAGTCACAAG-----AAGGT---TAACTTTTTTAGCACTTAAGATTTTCTTGAACTGTGCTTATTATGCTGTTAATAAATAAATAAAATCTCTAGGAATGGCTGTAGTAAACTGTGTTATTACTTACCCTAAGCTCTCCCTTCCTTCCTTTTACTCTCAAAAAAGTCCGTAAGAAAGGAAGCAAATTTTTACGGCTTGCTTTCACCATTGGAATTTCCTTAGAATGACTTTT s panTro1.chr19 42792571 706 - 82489036 GTGATGTAGCTTTGCTTA---AGAAGAAGCAAGGAATTCACAAAGAATCATATCTTTTAAACC-AAATTTGATGTGGGATTTGAAAATATGTCTTAATTCTGACTCAGAAAGAGTTATGATGTAAACTCAAAGCTGTCATTTCTAGAAAAGCAGAACT-ACCACTTGGTGTTCTGGTTCAAAATCCAAGAGTAGCATCGTAACTTGCATTTCTCTGTAAT-GAACCCATACTCCATGGAGGCCTGGTCACCTTTTATTGCATCTAAACAAAACCTTTATATTCACCGTCATCAGCTGTCTCATTCAAATTATATAAACTTTCCAGTTCACTGGATTAGTCTCTAATATCTATAATTAATAAACTGCATACAGCCGATCTAACACTCTGTAGTAAATCACATACTCCAGTATTAATATGTTAAAAAGTATAATTTTATGCAGTTAAAAAATCTAAATCTATAGAATATCCTAAGATAAAAGATGAGACAAAGTCACAAG-----GAGGT---TAACTTTTTTAGCACTTAATATTTTCTTGAAGTGTGCTTATTATGCTGTTAATAAATAAATAAAATCTCTAGGAATGGCTCTAGTAAACAGTGTTATTACTTACCCTAAGCTCTCCCTTCCTTCCTTTTGCTCTCAAAAAAGTCTGTAAGAAAGGAAGCAAATTTTTATGGCTTGCTTTCACCCTTGGATTTTCCTTAGAATGACTGCT s canFam1.chr9 14302481 646 + 53642819 GTGATGTAGATTTGCTTAAGGAGAGGAGGCAAAAAATTCA--------CATACCTTTTAACTCAAAATTTGATGTGGGATTTGAAA--GTGTCTTAATTTTGACTTGGGAAGAATTATGATCTTAACTCAAAACTGTCATTTCTGGAGAAGCAGGACTGAACACCTGGTATTCTGATTCAACCTGTATAAGTAGCATTTTAAAATTCATTTCCCTATAATAGAATCCATACTCAACAGAGACCAGGTCACCTTTCATTGCACCTGCACAAA--------------------------------TTCAATTATATTAGCTTT-CAGTGAGTTGGACTAGTTTCTAATATGTACAGT----AAACTGCATATTGCAGATCTAACA-------------CACATGCTCCAGTGTTAATACACTGAGTGTGAT--TTTTATGCAGTTAAGGACATTTAAACTATAGGACATTCTAATATCAAAATTTAGATAAAGTCACAAGTCAAATAGGTTAATAACCTTTTTAGCACTTGAGATTTTCTTGAAATGTGCttattatatagt---taaaaaaataaaattttCAGAGAAGCCTCT----AATTGTGTTGTTACTTACCCTAAATGCTGCCTTTCTTCCTTTGACTCTAAAAAAAGTTTGAAAG---TGGGCCACATTTTTACATCTTTCTT--ACCCTTTGATTTTCTCTACAACAATTGCT a score=1500.0 s hg17.chr17_random 2524783 5 + 2618010 TACAT s panTro1.chr19 42793277 5 - 82489036 TACAT s mm5.chr11 22167061 5 - 121648857 TAAAA s canFam1.chr9 14303127 5 + 53642819 TACAT a score=1991.0 s hg17.chr17_random 2524788 77 + 2618010 ---AAAAaaagaaga------aaggaaagaaagaa-aggagaaagaagaaaaagaaagaaagaaagaaagaaagaaagaaagaaaga s panTro1.chr19 42793282 32 - 82489036 ---aaaaaaagaaga------aagga---------------------------------------------aagaaagagagaa-ga s mm5.chr11 22167066 78 - 121648857 ---AGAAGAAGAAGA------AATAATAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG s rn3.chr10 21968304 74 - 110733352 ---AGAAGAAGAAGA------AGTAG----AAGAAGAAGAAGAAGACGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAG s canFam1.chr9 14303132 79 + 53642819 TTGGAAAACAGAGCATTTTTTAAGATTTTATTTATTTAAGAGAGAGAGTGTGTGCATGTGTGTgagagagagagaaaga-------- a score=18737.0 s hg17.chr17_random 2524865 130 + 2618010 aagaaagaaaggaaggaaggaaggaaggaaggaaggaagga-----aggaaggaaagaaagaaagaaaggaaagaaagaaagaaagaaggaaagaaagaaag-aaagaaagaaagaa-agaaagaaagaaag--aaaga s panTro1.chr19 42793314 80 - 82489036 aagaaagaa-------------------------------------------------aagaaagaaa-------aagaaagaaagaa--aaagaaagaaaggaaagaaagaaagaa-agaaagaaagaaagggaagga s mm5.chr11 22167144 135 - 121648857 AAGAAGAAGAAGAAGAAGAAAAAGAAGAAAGAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGAAGAAGATGAAAAGAAGAGAAGAAGAAGAG-AAGAAGAAGAAGAA-AAGAAGAAGAGGAG--GAGGA s rn3.chr10 21968378 131 - 110733352 AAGAAAGTA--GAAGGAGGAGAAGGAGGAGAAGGAGGAGGAGGAGGAGAAAGAGGAGAAGGAGGAGGAGGAGA--AGGAGAAGAAGAA--GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA--GAAGA a score=10597.0 s hg17.chr17_random 2524995 37 + 2618010 agaaaggagggaaggaaggaaggaagggagaaagaca s panTro1.chr19 42793394 33 - 82489036 agaaaagagggaaggaaggaagg----gagaaagaca s mm5.chr11 22167279 37 - 121648857 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA s rn3.chr10 22171393 37 - 110733352 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA a score=5935.0 s hg17.chr17_random 2525032 7 + 2618010 gagagaa s panTro1.chr19 42793427 7 - 82489036 gagagaa s mm5.chr11 22167316 7 - 121648857 GAGAGAG s rn3.chr10 22171430 7 - 110733352 GAGAGAG s canFam1.chr9 14303211 7 + 53642819 gagagag a score=286.0 s hg17.chr17_random 2525039 33 + 2618010 agagagaaagaattgactatagtg------------------------------tttaaagag s panTro1.chr19 42793434 33 - 82489036 agagagaaagaaTTGACTatagtg------------------------------tttaaagag s mm5.chr11 22167323 62 - 121648857 AGAGAGCAACATTTTACCATCTAGCTTACTATCTGGAGGTTATTCTGTTTTCATTTTAAAAA- s rn3.chr10 22171437 21 - 110733352 AGAGAGAGAGAGAAGGCTAAG------------------------------------------ s canFam1.chr9 14303371 34 + 53642819 TGGAAAAAagtattgactatagtg-----------------------------gttgaaagag a score=17771.0 s hg17.chr17_random 2525072 33 + 2618010 tttagtctggaatcagaggttgtggattcaaat s panTro1.chr19 42793467 33 - 82489036 tttagtctggaatcagagggtgtggattcaaat s mm5.chr11 22385348 33 - 121648857 TTTTATCTGCAGTCAGATGGTAGAAGCTCAGAC s rn3.chr10 22171458 33 - 110733352 TTTTATCTGCAATCAGATGGTAGATGTTCAGAC s canFam1.chr9 14303405 33 + 53642819 tttagtctggagtcagatgatgtgggttcaaat a score=11485.0 s hg17.chr17_random 2525105 13 + 2618010 ttcagattcacta s panTro1.chr19 42793500 13 - 82489036 ttcagattcacta s mm5.chr11 22385381 13 - 121648857 TTCAGATTCACCA s rn3.chr10 22171491 13 - 110733352 TTCAGATTCACCA s canFam1.chr9 14303633 13 + 53642819 TTcagattcacca a score=5146.0 s hg17.chr17_random 2525118 39 + 2618010 gatactagtgtgaactagggtaagttacttcaacctgtt s panTro1.chr19 42793513 39 - 82489036 gatactagtgtgaacttgggtaagttacttcaatctgtt s mm5.chr11 22385397 37 - 121648857 GGTTTTTTTATGGCTTTGAGGAACTTCTTTC--TTTGTT s canFam1.chr9 14303646 39 + 53642819 cttcttgctgtgaaactaggcaagagatgtaaatctgtt a score=70.0 s hg17.chr17_random 2525157 1 + 2618010 -g s canFam1.chr9 14303685 2 + 53642819 tg a score=38.0 s hg17.chr17_random 2525157 1 + 2618010 g s panTro1.chr19 42793552 1 - 82489036 g s mm5.chr11 22385750 1 - 121648857 A a score=274352.0 s hg17.chr17_random 2525158 694 + 2618010 tggctcagttttctcacatggttgatgggagtggcagtgatacctagcccata--gattgccgtgaaaattcagcaaattgatacatgcgaagtactcagaactatttaggcacataatcagtgat-gggaaaatgttATCAATAGCAATTAATGCAAATCTCCCAGGCCC----AAGAAAGCATCCCTTTCTGGCCAGCTGAATATAGTCTTGCTTCACAGTCAAAGGGAAGATAAGAAAGTTAGAGAAGGAGCCACAGTTA--------AAATTGGAGGGAATTAAACTGTCATGTGAGACCCAATCACCCAGTTGTAAGGGTCAACACTGAGTAA-TATTGACAATCCTTAAAGGTGAG--GCATCA---------GTCAATTATTCCT-TGACCATGAGGAAATTTTAAGAAACATGAGGAGTTAGGGATCATATTCCTAATTAATGCCAATGACTTCTTGACCATGGTAAAGAAGCCTAATTGCAGACCAAATACAATCAAC-TTTCAAAGGCTCTCAGTAGGTTCAACAAATAATTCAGGGAGAGGCCAATTATCATTCAGAGACAAATTAT-CCAACACAAATAAGCAAGAGACTTCTGGAATTATGTAAACAGTAGCTGGCCCAGGCTTATAAAAGGCCCAATGTGGCAGCCATCACCAAAACTC-AGAAACTCCTCCAAGCAACCCAGACTT-----CATACCAGCTCCCAACACCATGAC s panTro1.chr19 42793553 693 - 82489036 tggctcagttttctcacatggttgatgggaatggcaatgatatctagcccata--gattgctgtgaaaattcagcaaattgacacatatgaagtactcagaactatttaggcacataatcagcgat-ggaaaaatgttATCAATAGCAATTAATGCAAATCTCCCAGGCCC----GAGAAAGCATCCCTTTCTGGCCAGCTGAATATAGTCTTGCTTCACAGTCAAAGGGAAGATAAGAAAGTTAGAGAAGGAGCCACAGTTA--------AAATTGGAGGGAATTAAACTGTCATGTGAGACCCAATCACCCAGTTGTAAGGGTCAACACTGAGTAA-TATTGACAATCCTTAAAAGTGAG--GCATCA---------GTCAATTATTCCT-TGACCATGAGGAAATTTTAAGAAACATGAGGAGTTAGGGATCACATTCCTAATTAATTCCAATGACTTCTTGACCATGGTAAAGAAGCCTAATTGCAGACCAAATAGAATCAAC-TTTCAAAGGCTCTCAGTAGGTTCAACAAATAATTCAGGGAGAGGCCAATTATCATTCAGAGACAAATTAT-CAAACGCAAATAAGGAAGAGACTTCAGGAATTATGTAAACAGTAGCTGGCCAAGGCTTATAAAAGGCCCAATGTGGCAGCCATCACCAAAACTC-AGAAACTCCTCCAAG-AACCCAGACTT-----CAGACCAGCTCCCAACACCATGAC s mm5.chr11 22385751 669 - 121648857 TGGCTCAGTTTCTTCCCCTGAATTATGACAGCAGCAGTAGAGCCCACCCTTAA--GGTTGATGTGAAAAAGAAGTGGATTTATACA----AGATATAGACAGTTGTCTAGATACATGATAAGTGCT-CAGCAATCATTAGTGATAACGAACCATTCACATTTCCCAGGTGCAGAGAAGGAGGCAT-CTTTTCTGTCCAGTTGAACCCA-CCTTTCATCCCAGTCAAAGGAA-------------------------ACAGGCA--------AAAAT-------ATTGAACTTCCATGTGAGATTCAAG-AACCAATTACAAATGTCAACACTGAGTAATTTTTGACTCTCCTTAAATAGGAGTAGCATTA---------GTCAATTAGTCGT-TGGCGGTAGGAAGATTATAGTGAATATGGGTGATCCAGGCTCATGTTTCCAATGAACGCTAATGACTACTTCACTGTAGTCAAGAAGTCTAATTGAACACCAAATAAAATCAGCTTTTTACGGGCTTTCAGAAGTCTGAACAAGTAACTCAGAAACAAA-CAATTATCATTTAGAGAAAAACTACATAAACATAAACAAGGAAGACACTTTGGAAATTAGGGAAACAGCAGCCAGCCAGGGATTATAAAAAGACTGGAGTGGCACTCACCACACAAATTCAAAAAACTTCTCTAAGCAAACAAACCTTCAGCACAGATCAACTTCTGACACCATGGC s rn3.chr10 22171847 643 - 110733352 TGGCTCAGTTTCTTCCCCTGTGTTA-GACAGCAGCAGTAGAGCCCACCCCTGAAGGATTGCTGTGAAAATGAAGTGGATTGATACA----AGACATAGACACTTGTGTAGGTTCATGATGAGTGCC-CAATAATCATCGGTGATAATGAACTATTGACATTTTCCAGGTGT------------GT-CTTTTCTGTCCAGCTGAACCCACCTTTGCTTCCCAGCCAAAGGAAATA-------------------------GACA--------AAGTT-------ATTGAACTCCCGTGTGAGATTCAAG-ATGCAATTACAAGGGTCAACACTGAGTAATTTTTGACTCTCCTTAAATAGGAGCAGCATTA---------GTCAATTAGTTGT-TGGCAGTATGAAAATTATAGCGAATATGGGTGATCCAGGCCCATGTTTCCAGTGAACACTAATGACGACTTCACCGTAGTCA--------------ACACCAAATAAAATCAACTTTTTACGGGCTTTCAGAAGTCTGAACAAGTAACTCGGGAACAAA-CAATTATCGTTCAGAGGAAAATTACATAAACATAAACAAGGAAGACACTTTGGAAATTAGGGAAGCAGCAGCCAGCCAAGGATTATAAAAGGACTGGAGTGGCAGTCACTACCCAAATTCAAAAAACTTCTCTAAGCAAACGAACCTTCAG--CACAGCAACTCCTGACACCATGGC s canFam1.chr9 14303687 706 + 53642819 aggctcagtttcattacatggatgatgggagtagctataggcgtggctcatgg--gatcgcagtaaaaattaaatgaactgatacaggcaaagtagtcagaaccatttgggcaccca---agtgctccagaaaCTGTGATCAGTAACAATTCATCCACATTTCTCAGTCAC---CCAAAAAGCATCCCTTTCTGGCCAGCTGGATCA--CTTTGTTTCATGGTCAAATTGAAGATAAGAAAGATAAATGGGCAGTAGTTGACATCAGGGCCATGTTGCTGGGAATTAAACTGTCATGTGAGGCCCAAGAGCTCGATTATTAGGATCAACATTGAGTAA-TACTGACACTCCTTAAAGATGAG--GCATTATTGGTCATTGCCCATTATTCTTAGGGCAATGACCAAATTTTAACAAATATGAGGGACTGTGGGATGTGTAGCCAATGAATGCCAATGATTACTTGACTGTGGTAAAGAATACTAATTGTAGACCAAATAAAATGAAC-TTTAAAAGCCTTTTAG-AGGTTGAA-AAATAACTCAGGAACAGGGAAATTATTATTCAGAGACAGATTATTTATACACAGACAAGAAAGAGATTTTGAGAATTATGTAAATCATAGCTAGCCAAGCCTTATAAAAGGCCCAGCATGGAAGTCACTACCAAATCTC-AAAAACTTCTCTTAGCAACCCAGCTCT-----CAACCTAAGTTCTG--ACCATGGC a score=312099.0 s hg17.chr17_random 2525852 497 + 2618010 CTGCTGCCAGACCAGCTTCTGTGGATATCCCAGCTGCTCCACCAGTGGGACATGCGGCTCCAGCTGCTGCCAGCCAAGCTGCTGTGAGACCAGCTGCTGCCAGCCAAGCTGCTGCCAGACCAGCTTCTGCGGATTTCC-TAGCTTCT-------CAACTAGTG--GGACCTGCAGC------TCCAGTTGCTGCCAGCCAAGCTGCTGTGAGACCAGCTGCTGCCAGCCAAGCTGCTGCCAGACCAGCTCCTGCGGAACTGGCTGTGGCATTGGTGGTGGCATTGGCTATGGCCAGGAGGGCAGCAG-TGGAGCTGTGAGCACCCGTATCAGGTGGTGCCGCCCAGACTGCCGT----GTGGAGGGTAC-----CTGCCTGCCCCCCTGCTGTGTGGTGAGCTGCACACCCCCAACCTGCTGC--CAGCTGCACCACGCCGAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGTCTGCTGCTGCT---------------------------------------------ACTCCTGTGAGCCCACCTGCT s panTro1.chr19 42794246 496 - 82489036 CTGCTGCCAGACCAGCTTCTGTGGATATCCCAGCTGCTCCACCAGTGGGACATGCGGCTCCAGCTGCTGCCAGCCAAGCTGCTGTGAGACCAGCTGCTGCCAGCCAAGCTGCTGCCAGACCAGCTTCTGCG-ATTTCC-CAGCTTCT-------CAACCAGTG--GGACCTGCAGC------TCCAGTTGCTGCCAGCCAAGCTGCTGTGAGACCAGCTGCTGCCAGCCAAGCTGCTGCCAGACCAGCTCCTGTGGAACTGGCTGTGGCATTGGTGGTGGCATTGGCTATGGCCAGGAGGGCAGCAG-TGGAGCTGTGAGCACCCGTATCAGGTGGTGCCGCCCAGACTGCCGT----GTGGAGGGTAC-----CTGGCTGCCCCCCTGCTGTGTGGTGAGCTGCACACCCCCATCCTGCTGC--CAGCTGCACCACGCCGAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGTCTGCTGCTGCT---------------------------------------------ACTCCTGTGAGCCCACCTGCT s mm5.chr11 22386420 515 - 121648857 CTGCTGCGCTACTAGCTTCTGTGGCTTTCCCACATGTTCCACTGGTGGCACCTGTGGCTCCAGCTGCTGCCAGCCCAGCTGCTGCCAGCCCAGCTGCTGCCAGCCTAGCTGCTCCCAGTCCAGCTGCTGCC-A--GCC-CAGCTGCTGCCAGTCCAGCTGTTGCCAGCCCAGCTGCTGCCAATCCAGTTGCTGCCAACCTTGCTGCTCCCAGACCAGCTGTTGCCAGCCCAGCTGCTGCCAGCCCAGCTGCTGTGGAACTGGCAG------------------------TGGCCAGGAGGGTGGCAG-TGGAGCCGTGAGCTGCCGTGTTAGATGGTGCCGCCCTGACTGCCGC----GTGGAGGGCAC-----CTGCCTGCCCCCCTGCTGTGTGGTAAGCTGCACACCCCCAACCTGCTGC--CAGCTGCACCATGCCCAGGCCTCCTGCTGCCGTCCATCCTATTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTGCTACTGCTGCCCACCCAGCTGCTCTGA---------------GTCTAACTGCTGTGAGCCTACCTGTT s rn3.chr10 22172490 485 - 110733352 CTGTTGCGCTACTAGCTTCTGTGGCTTTCCCACCTGCTCCACTGGTGGCACCTGTGGCTCCAGCTGCTGCCAGCCCAGCTGCTGCCAGCCCAGCTGCTGCCAGCCCAGTTGTTGCCAACCCAGCTGCTGCC-A--GTC-CAGTTGCTGCCAGCCTAGCTGCTG-----CCAG----------TCCAGCTGCTGCCAGCCCAGCTGCTGCCAATCCAGTTGCTGCCAACCCAGCTGCTCCCAGACCAGCTGTTGCCAGCCCAGCTG---------CTGTGGCACTGGCAGTGGCCAGGAGGGTGGCAG-TGGAGCCGTGAGCTGCCGTGTTAGATGGTGCCGCCCTGACTGCCGA----GTGGAGGGCAC-----CTGCCTGCCCCCCTGCTGTGTGGCGAGCTGCACACCCCCAACCTGCTGC--CAGCTGCACCACGCCCAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTGCT---------------------------------------------ACTGCTGCCCACCTAGCTGCT s canFam1.chr9 14304393 449 + 53642819 CTGCTGCTCCACTAGCTTCTGTGGATTTCCCACCTGCTCCACCAGTGGGAACTGTGGCTCCAGCTGCTGCCAGCCTAGCTGCTGTCAGACCAGCTGCTGCCAGCCAACCAGCTGCCAGACCAGCTGCTGCC-A---------------------------------------------------------------GCCAACTTGCTGTCAGACCAGCTGCTGCCAGCCCAGC------------------TGTGGGACTGGCTGTGGCATTGGTGG------------TGGCCAGGAGGGTGGCAG-TGGAGCTATGAGCTGCCGAGTCAGGTGGTGCCGCCCTGACTGCCGC----GTGGAGGACAC-----CTGCCTGCCCCCCTGCTGCGTGGTGAGCTGCACACCCCCAACCTGCTGC--CAGCTGCACCATGCCCAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTCCT---------------ACTGCTGCCAGCCCACCTGCTGCCAGCCCACCTGTTGTGAGCCCACCTGCT s fr1.chrUn 303307715 467 + 349519338 CTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTACTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTACTACTGCTGCTGCTGCTGTAGCTGCTGCTGCT-ACTGCTGTAGCTGCT---------GCTGCTGCTGTAGCTGCTGC------TGCTACTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTGCTGCTGTAGCTGCTGCTGCTGTAGCTGCTGCTGCTACTGCTGTAGCTGCTGCTGCTGCTGTAGCTGCTACTACTGCTGCTGCTGCTGTAGCT----GCTGCTGCTGTAGCTGCTGCTGATGTAGCTGCTGCTGCTGCTGCTGCTACTACTGCTGCTGCTGCTACTGCTGT------AGCTG------------CTGCTGCTGTAGCTG--------------CTGCTGCTGTAGCTGCTGCTGCTGTAG------CTGCTGCTGCTGTAGCTGCTGCTGCT---------------------------------------------ACTGCTGTAGCTGCTGCTGCT a score=5071.0 s hg17.chr17_random 2525977 48 + 2618010 TCTGCGGATTTCC-TAGCTTCT-------CAACTAGTG--GGACCTGCAGC------TCCAGTT s panTro1.chr19 42794371 47 - 82489036 TCTGCG-ATTTCC-CAGCTTCT-------CAACCAGTG--GGACCTGCAGC------TCCAGTT s mm5.chr11 22386545 60 - 121648857 GCTGCC-A--GCC-CAGCTGCTGCCAGTCCAGCTGTTGCCAGCCCAGCTGCTGCCAATCCAGTT s rn3.chr10 22172615 45 - 110733352 GCTGCC-A--GTC-CAGTTGCTGCCAGCCTAGCTGCTG-----CCAG----------TCCAGCT s canFam1.chr9 14312005 48 + 53642819 TCTGTGGATTTCC-CACCTGCT-------CCACCAGTG--GGAACTGTGGC------TCCAGCT s fr1.chrUn 303307840 48 + 349519338 GCTGCT-ACTGCTGTAGCTGCT---------GCTGCTGCTGTAGCTGCTGC------TGCTACT a score=152235.0 s hg17.chr17_random 2526349 518 + 2618010 AAAAGCCAGTTTGCTGATTTTCAACTTGAAATTTCCACTTTCAGTTCCAT----TCATGAACGAATTATTTCTTCAAGCACTTATGGACAACGAACAAATTCTTCAACCTTTCTTTGTCTTTCTTA-TGGGGGTTACCAAATATTTTGGCCTCAGAAT--TATCTGATTCCTTTCAATTCCAGAAAGACCTTACTCTTCTCTCTGAGGACGCCAAAATACAAATTTGACCCAAGAAATGAAAAAGCCGATTTACCTTGAAACTGAGCCTTTGCAAGCATTGAAGCCCACGCTCTGAGTCTCAGCGCCGACGAGACCATGGAAGAGCCATCTGTCCTTCTC-AGGACACTCACTTCCTGTA-TCCCACCGTCCTGCAAATTGCACCCCCTAT-GAAAGAGGAATAATATACCAAGGTCTAATAAATTTTAACTATTGGTGCAACAAACATATCTTTTTTTTTTCATTGAGTGTACTCAGGATGTATATTTCATAGAATGTCATATGAAAAACTTTAATCTGCTTTTGAT s panTro1.chr19 42794742 518 - 82489036 AAAAGCCAGTTTGCTGATTTTCAACTTGAAATTTCCACTTTCAGTTCCAT----TCATGAACAAATTATTTCTTCAAGCACTTATGGACAACTAACAAATTCTTCAACCTTTCTTTGGCTTTCTTA-TGGGGGCTACCAAATATTTTGGCCTCAGAGT--TATCTGATTCCTTTCAATTCCAGAAAGACCTTACTCTTCTCTCTGAGGACGCCAAAATACAAATTTGACCCAAGAAATGAAAAAGCCGATTTACCTTGAAACTGAGCCTTTGCAAGCATTGAAGCCCACGCTCTGAGTCTCAGCGCCGACGAGACCATGGAAGAGCCATCTGTCCTTCTC-AGGACACTCACTTCCTGTA-TCCCGCCGTCCTGCAAATTGCACCCCCTATTGAAAGAGGAATAATATACCAAGGTCTAATAAATTTTAACTATTGGTGCAACAAACATATCTTTTTTTTT-CATTGAGTGTACTCAGGATGTATATTTCATAGAATGTCATATGAAAAACTTTAATCTGCTTTTGAT s mm5.chr11 22386935 413 - 121648857 AAGACCCAGGTTGCTGATTCCCAA------------------------------------------------------------------------AGGATCTTGAATTTTGATATGGCTTGTGTT-TGGGG---CACAAATACTTGGCCTTACTAAA--CATTTTTTTCCATCTAATACTGGAAAGGCTTTGATATCCTCTATGAAAATAATAAAATACAAACTTGATCCCC-AAACAAGAAAATCAATTTACCTTGGGATTGTCCCT------------------ATTTTCCAAGGCTTGGTGCTGTCAAGGCCATGGAAGATTCTTCTACACG-----AAGATAGTTTTCATTCTTC-TTCCATTGTTCTGTAAATT---CCTCTTAT-AAATGAAGGCTAATGTATCCAAA-ATAATAAATTATATCTGTTGGCATATCAAAACTTGCTTCTTTT---TATTTAGTGTGCAAATAATAGATACTTCATGGAGATCCATCTAAAAGATT----TCTGAGTTTGAT s rn3.chr10 22172975 475 - 110733352 CTGAGTCTAACTGCTGTGAGCCTACCTG-----------TTAAGACCCAGAGGATCCCCAAAGGATCAGAGCTTTCA--ACTCCTGGGCCACTACCACGTTCTTGAACTTTGATATGGCTTGTGTT-TGGGGG--CACAAATACTTGACTTCGCAAAA--CATTTTTTTTCATCTAATACTGGAAAGGCTTTGACATCATCTATGAAAACAACAAAATGCAAATTTGATCCCC-AAATGAGAAAATCAACTTACCTTGGGATTGTCCCTTT-----------------TGTTCCAAGGCTTGGCGCTGTCAAGGCCATAGAAGAATCTTCTATGCT-----AACATACCTTTTATTCTTCTTTTCACTGTTCTGTAAACC---ACTCTTAT-AAAAGAAGGCTAATGTATCAAAA-ATAATAAATTATATCTGTTGGCATATCAAAATTTGCTTCTTTT---TATTTAGTGTGAATATAATAGATACTTCATGGGCATTCATATAAAAGATT----TCTGAGTTTGAT s canFam1.chr9 14304842 492 + 53642819 AAAAGCCAGGTTGTTGATTTTTGATTTGAAGTTTCAACTTCCAAATCAAT----TCATGAACTAATTTTCTCTTCCACTAATCATGGACCACTAACAAATTCTTGAACTTTTATTTGGATTTTGTTGTGGGGGATACCACACATTTGGGCCTCACAGATCTATCTGATTCCATTCAATTCTGGAAAGACCTCATTCTCCCCACTGAGGTTGCCAAAATATAAATTTAACTCAAGAAA-------------TTGCCTTCAGGACGCATGT------------GAATTTACTCTCTATGACTCAGTGCCACCGATGCCACAGAAGAACCATCTGTCCTTCTCAGATATGTACACCTCCTCTA-TGCCACCGTTCTGCAAGCTGCAGTTTTTAT-GAAAGGGAATTAATATACCAAGGTCTATTAAATTTTAT---TTGGTGCAACAAACATATCTATTCTTCTTCATTGAGTGTGTTCTTTATATGTATTTCATAAAAAGTCACT--AAAGATTTTAGTCTGTTTTGGAT a score=10814.0 s hg17.chr17_random 2526390 51 + 2618010 CAGTTC----CAT----TCATGAACGAATTATTTCTTCAAGCACTTATGGACAACGAAC s panTro1.chr19 42794783 51 - 82489036 CAGTTC----CAT----TCATGAACAAATTATTTCTTCAAGCACTTATGGACAACTAAC s mm5.chr11 22397170 55 - 121648857 CAGATCATGGTAT----TCTTGAATTGTGCATCTCCTTAACCAACTCTGGAGCAGTAAC s rn3.chr10 22173005 53 - 110733352 AAGACC----CAGAGGATCCCCAAAGGATCAGAGCTTTCA--ACTCCTGGGCCACTACC s canFam1.chr9 14304883 51 + 53642819 CAAATC----AAT----TCATGAACTAATTTTCTCTTCCACTAATCATGGACCACTAAC a score=31552.0 s hg17.chr17_random 2526867 186 + 2618010 ATCCCTTCTCTTCTAATACCACAT-------TAGGAAATTTGTTATCCAGAGGTCCAGTGGAGGTTAATGACCATAAAAACATAGAGTAAGTGTAGTTATTTAGGGCCTCAGAAATGGCAAAGGCTCTGTTACCATAACTTAACCTTACACAGTGCTTTCACAACCAGGAAGTTACAGAAATCAAAATCTCTg s panTro1.chr19 42795260 186 - 82489036 ATCCCTTCTCTTCTAATACCACAT-------TAGGAAATTTGTTATCCAGAGGTCCAGTGGAGGTTAATGACCATAAAAACATAGAGTAAATGTAGTTATTTAGGGCCTCAGAAATGGCAAAGGCTCTGTTACCATAACTTAAACTTACACAGTGCTTTCACAACCAGGAAGTTACAGAAATCAAAATCTCTg s canFam1.chr9 14305334 167 + 53642819 ---------------ATCCCACATTGCTGTCTAGGAAATTTA--ATC---AGATCCAATGGATGTTAATCCCCATAGAAAGATAAAGCAAAGGCAGTTATATAGGGCCTCAGAAGTGGCACAGGCTCTATTTCCAAATCTTGACCTCACAAAATGTTTCCATA------GAGTTACAGAAATCGGGAACTCTG a score=231683.0 s hg17.chr17_random 2527053 2532 + 2618010 gctgggtacggtggctcacacctgtaatcccagcattttgggaggccaaggtagacagatcacgaggtcgggagtttgagatcagcttggccaacatggtgaaaccccatctctactaaaaaaaataaattgcatttctatatactaaccatgaaaaatctgtaaggaaaattttaaaaacaattccatcaaaagaataaaatacttatggccgggcatggtggctcatgcctgtaatcccagcactttggtaagctgaggtgggcagatcacctgaggttaggagctcaagtccagcctggccaatatagtgaaaccctgtctctactaaaaatacaaaaattagccaggcatgttcgtggatgcctgtggtcccagctactggggaggctgaggcatgagaattgcttgaacccaggaggtggaggttacagtgagccaagattgtgccacttcactccagcctgggtgacagagtgagactccatttcaaataataataataataataaaataaAGAATAAAAtacttaggaacaaacttagccttggaggggaaagactcgtacaccagaaactacaaaatgttactgaaagaaattaaagaagacacaaataaatgaaaagacatcctgagatcatggattataggatttaatattgttaagatgtcaatactacccagagaatctacagatttaacgcaatccctataaaaatcccaatgatgtttttgcagaaattttaaaaaaatccatcctaaaatacatatgaaattagaaggggtcctatatagccaaaacaatcttaaaaaagaacaaagttggtctcacattttcctgtttcaaaatttactgtaaagctacagtaatcataacagtgtgatactgatataaagacagatatataaagcaatggaaaagaacagagagcctagaaataaaccctcaaatacacatatggttaaATGAGTTCATTTATTTAtttatttgaattgacaaaaattatatgtatttattgtgtacaacacatttttttggaatatgtatacttcgtacaatggctaaatcaaactaattaacatatgcattacctcacataagtttttttgtagtgaaaacacaaaatctactctcttagcaattttcaggactgtaacatattgttatgaactatagtctctatgttgtacaatagatctcttgaatttattcctcttatctaactgaaattttgtaatcctttgaccaacatcttcccaacacactccaccaccaccctaccccc-ggtaaccaccattctactttctacttccatgaattcaactttttCTTTTTTTT-GAGGtttttttgtttttattatactttaagttctagggtacatgtgcacaacttgcaggtttgttgcatatgtatacatgtgccatgttggtgtgctgcacccaataacttgtcatttacattaagttccacttgtaagtgagaaagtgcaatattagtctttttctttgtctgacttatttcacttagtataatgttctcaagtttaatctgt--tgccccaaatagcaggatttccttcttttatgaccaataatattccagtgtgtgagtgtgtgtgtgtgtatgtgtgtgtgtatcacattttctttatccactcatttaatgatggacatggacacttaggttgcttccatatcttggctattgtgagtaatgctgcaatgaacatgggaatgcagatgtctcttcaaaatactgatttactttccttcgggtatatacacagaagtgggattgcttgattatatgacagttctatttttaattttctgatgaaccttcatattgttttccataatggctgtactaatttacatttccaccaacagtgtgccagagttctcttttctccacttcctctccaacacttgctatcttttgtctttttgataataactatctaatatgtgtgagacgatatctcattgtggtttcaatttgcattatccgatgattggtgattttgaaaatttttcatatacctgttggcaatttgtagattttttttgagaaatgtctatttagattttttgcccatttttcaattacgttatttgttttcttactacaggtattgagttgtttgagtttcctctatactttggatattaaccctttatcagatatgtggtttataaatattttctcccattcagcggtttgcgtcttcactcagtttagtgttttattggctgtgcagaagctttttagtttgatgtaatcccacttgtctatttttgctgatgcttttggattcatgttcacaatatcacaatattggccaggcaaaagtcatggagtttcctctgttttcttcttatagttttatcattttgagtctttcttacatttcagtcttttaatccattctaagttggtttttgtatataatgtgagacaatggtctaatttcatttcttctgaatgtgaatGTGGTCAAATGATTTTCAACAAGGGTGACAAGACTatttac s panTro1.chr19 42795446 2531 - 82489036 gctgggtacggtggctcacacctgtaatcccagcattttgggaggccaaggtgggcagatcacgaggtcgggagtttgagatcagcttggccaacatggtgaaaccccatctctactaaaaaaaataaattgcatttctatatactaaccatgaaaaatctgtaaggaaaattttaaaaacaattccatcaaaagaataaaatacttatggccgggcatggtggctcatgcctgtaatcccagcactttggtaagctgaggtgggcagatcacctgaggttaggagctcaagtccagcctggccaatatagtgaaaccctgtctctactaaaaatacaaaaattagccaggcatgttcgtggatgcctgtggtcccagctactggggaggctgaggcatgagaattgcttgaacccaggaggtggaggttacagtgagccaagattgtgccacttcactccagcctgggtgacagagtgagactccatttcaaataatagtaataataataaaataaagaataaaatacttaggaacaaacttagccttggaggggaaagacttgtacaccagaaactacaaaatgttactgaaagaaattaaagaagatacaaataaatgaaaagacatcctgagatcatggattgtaggatttaatattgttaagatgtcaatactacccagagaatctacagatttaacgcaatccctataaaaatcccaatgatgtttttgcagaaattttaaaaaaatccatcctaaaataca-atgaaattagaaggggtcctatatagccaaaacaatcttaaaaaagaacaaagttggtctcacattttcctatttcaaaatttactgtaaagctacagtaatcataacagtgtgatactgatataaagacagatatataaagcaatggaaaagaacagagagcctagaaataaaccctcaaatacacaTATGGTTAAATGAGTTCATTTATTTAtttatttgaattgacaaaaattatatgtatttattgtgtacaacacatttttttggaatatgtatacttcgtacaatggctaaatcaaactaattaacatatgcattacctcacataagtttttt-gtagtgaaaacacaaaatctactctcttagcaattttcaggactgtaacatattgttatgaactatagtctctacgttgtacaatagatctcttgaatttattcctcttatctaactgaaattttgtaatcctttgaccaacatcttcccaacacactccaccaccaccctaccccctggtaaccaccattctactttctacttccatgagttcaactttttCTTTTTTTTTGAGTtttttttgtttttattatactttaagttctagggtacatgtgcacaatgtgcaggtttgttgcatatgtatacacgtgccatgttggtgtgctgcacccaataacttgtcatttacattaagttccacttgtaagtgagaaagtgcaatattagtctttttctttgtctgacttatttcacttagtataatgttctcaagtttaatctgtgttgccccaaatagcaggatttccttcttttatgaccaataatattccagtgtgtgagtgtgtgtgtgtgtatgtgtgtgt--atcacattttctttatccactcatttaatgatggacatggacacttaggttgcttccatatcttggctattgtgagtaatgctgcaatgaacatgggaatgcagatgtctcttcaaaatactgatttactttccttcgggtatatacacagaagtgggattgcttgattatatgacagttctatttttaattttctgatgaaccttcatattgttttccataatggctgtactaatttacatttccaccaacagtgtgccagagttctcttttctccacttcctctccaacacttgctatcttttgtttttttgataataactacctaatatgtgtgagacgatatctcattgtggtttccatttgcattatccgatgattggtgattttgaaaatttttcatatacctgttggcaatttgtagattttttttgagaaatgtctatttagattttttgcccatttttcaattacgttatttgttttcttactacaggtattgagttgtttgagtttcctctatactttggatattaaccctttatcagatatgtggtttataaatattttctcccattcagtggtttgcatcttcactcagtttagtgttttattggctgtgcagaagctttttagtttgatgtaatcccacttgtctatttttgctgatgcttttggattcatgttcacaatatcacaatattggccaggcaaaagtcacggagtttcctctgttttcttctaatagttttatcattttgagtctttcttacatttcagtcttttaatccattctaagtcggtttttgtatataatgtgagataatggtctaatttcatt-cttctgaatgtgaatgtGGTCAAATGATTTTCAACAAGGGTGACAAGACTatttac a score=7048.0 s hg17.chr17_random 2529585 54 + 2618010 aaatggttaagatggttaatgtaaatggttcataaattttatggtatgtatatt s panTro1.chr19 42797977 54 - 82489036 aaatggttaagatggttaatgtaaatggttcataaattttatggtatgtatatt s mm5.chr11 22393064 45 - 121648857 AATTAGTTAAAATGATTGACATAA-----TGTTAAAAATATTGACATGAA---- s canFam1.chr9 14310820 53 + 53642819 aaatggttactatgttaaatttca-tattatatgtattttattataagtacaat a score=39683.0 s hg17.chr17_random 2529639 221 + 2618010 ttaccacaattaaaaaTTTGTAACTATAAACATGTGTAGGAGACCCAAACTTTTCTGAAATAGAAGATATATATGTATATATGCTGGTTTA------------------TATTTGCAGAAGCAAGGATAAAGGTGTCAAAGAATGTGCACCAAATTCTTAATATTGATTACCTCTAGAGCATTAGTTTTGGAAGAGATGTGTGCATCT-------TCCAGGA----AGGGAAAAGACAC-TAATTTTTCTT s panTro1.chr19 42798031 221 - 82489036 ttaccacaattaaaaaTTTGTAACTATAAACATGTGTAGGAGACCCAAACTTTTCTGAAATAGAAGATATATATGTATATATGCTGGTTTA------------------TATTTGCAGAAGCAAGGATAAAGGTGTCAAAGAATGTGCACCAAATTCTTAATATTGATTACCTCTAGAGCATTAGTTTTGGAAGAGATGTGTGCATCT-------TCCAGGA----AGGGAAAAGATAC-TAATTTTTCTT s mm5.chr11 22393109 239 - 121648857 TTTCCACAACTAAAA--TTATAATT-TACACATGCAT---AAAGCCAAACTTTATTGAAATTGAAGACACACACATGTGCACGCACACATACAAACACACACACATTATTACTTCAAGGAGCAGGAATGAA-----TAAAGAATAAACACCAACTGC-CAATATTGGTTATCTTTGTTACACTAGTTTTGAAAAAGATATTTGCATATGTGTATGTCTGTGACACTAGGGAAAGGGAATATCAGTTTTCCT s canFam1.chr9 14311058 199 + 53642819 -CACTATAAGTACAATTTTTAAAAAATAAGTACATAT---AGACCCCATTATTTACTTAACTAAATATATTTATG-----------GTTTA------------------TGTCTGCAAAAGCAGGGAGAAG--TGTCAAAGAATATGCACCAAA--CTGAATATTTATTATTTCTGAAGTACTAGTTTTGGATCAGATGGATGT-----------TTTGGGA-AAGAGAGGAAAAATAA-TAATTTTTT-- a score=310984.0 s hg17.chr17_random 2529860 763 + 2618010 TATATACCTCTGT-AC---TCTTTGACTTGTTACAATGTGTACTCATTACTA---------------GCACATATGTTTA---------------------------------------ATTTA-------ATAGAGTCAGAAAACAATCTACAAGCAAAAGTCATTAAAGATTTTAGTTAGCAATTTGTACATTCACTATTACTGAAGGCAAGAATATTAGATAGAGCTCTGAGGATCCTATAACTTGCACAAATTGATCATAGAAAGGCATACTTGGTTTGAAAGTTGATACATCAGGTT--GTAGTTCATGTTTTGATGACACTAATGTTAGTCTTTCCAAGTCTGGACAAA--TTGTTTATAAAATCATGAT-CATAGTTAAGTGACCATTTAAGGAA-AAATGATCAGTTAAGATAAATTC-TGCCTAAAGGTTATCAAAGGACAACTATGACAAAACGTGCCAGGGCGACACTTGGCTCAAGGCTAGTCTGTCATGTGACTTGCATAAAGAGGCACTTCGGTGCTTGGCTTCCATGATGAGCCTTCACTTCGCCCAGAGGGCAAAGAAGAAACATAATGAGACTTAATTGTACAATGGA---AAAAGGCTATTGAAATGCTATTTATAACTTTATAAACACCTCAGGTATTAGC----CAGAGACTCACACTGAAATTGACATCAAGAAAAG-------GTGTTGGGTAAATATGCAGCTCTAGGGAACATATCAAAGGACAGATATAGAAGGTACAGCCCAAACTCAGAAACCTCTCTT----AACACAGCTCTCAACCCAACTCCTGACACCATGGCCAGC----------------------------------------------------------TGTTCCACCAGTGGGACCTGTGGC s panTro1.chr19 42798252 763 - 82489036 TATATACCTCTGT-AC---TCTTTGACTTGTTACAATGTGTACTCATTACTA---------------GCACATATGTTTA---------------------------------------ATTTA-------ATAGAGTCAGAAAACAATCTACAAGCAAAAGTCATTAAAGATTTTAGTTAGCAATATGTACATTCACTACTACTGAAGGCAAGAATATTAGATAGAGCTCTGAGGATCCTATAACTTGCACAAATTGATCATAGAAAGGCATACTTGGTTTGAAAGTTGATACATCAGGTT--GTAGTTCATGTTTTGATGACACTAATGTTAGTCTTTCCAAGTCTGGACAAA--TTGTTTATAAAATCATGAT-CATGGTTAAGTGACCATTTAAGGAA-AAATGATCAGTTAAGATAAATTT-TGCCTAAAGGTTATCAAAGGACAACTATGACAAAATGTGTCAGGGCGACACTTGGCTCAAGGCTAGTCTGTCATGTGACTTGCATAAAGAGGCACTTCGGTACTTGGCTTCCATGACGAGCCTTCACTTCGCCCAGAGGGCAAAGAAGAAACATAATGAGACTTAATTGTACAATGGA---AAAAGGCTATTGAAATGCTATTTATAACTTTATAAACACCTCAGGTATTAGC----CAGAGACTCACACTGAAATTGACATCAAGAAAAG-------GTGTTGGGTAAATATGCAGCTCTAGGGAACATATCAAAGGACAGATATAGAAGGTACAGCCCAAACTCAGAAACCTCTCTT----AACACAGCTCTCAACCCAACTCCTGACACCATGGCCAGC----------------------------------------------------------TGTTCCACCAGTGGGACCTGTGGC s mm5.chr11 22393348 821 - 121648857 TATATGACTCTATCAC---TCTTTGCCTTGTTAAA---CATATCCATTGATATAATTTTACACACACACACATATATATATATACATATATATATATATATATATATATATATATATATATGTAAGTATATATGAAGACAGAAAACAATGTAGAAGGCAAAGTCGTTAAAAGCTTCGGTTTGTAAAGTGTGCATTGATGACCA--AAAGGAAGTAGCATT-----GAGCCTTAAGGATCTTCTAACCTGCGCAGACTGATCCCAGGAAGGCAGACTTTGTTTGGATGCTG----ATCAGTTT-AATAGTTCATGTTTTTATGACATCAATATTAGTCTTACCGAGTCTGAGTAAA--CTGTTTATGAAATCATG-----------AGTGGCTGCTTAGGAAATAAATTTTCAGTTTGGATAAACTTGTGCCT-AAGGTTATCAAAGGTCAGCTGAGGCAAAGCAAGCCATGGTAGT----------------GTTTGTCATTTGACTTTTATAGAGGG---CTGCTGTGTTAGG------TAATATACCTTCCCTTAGACCAGAGGGGAAAGAGGAAGCACAGGGCCACTTAATTGATCACTGACTATAGCAGATGATGGAAGCACTGTTTATACGTTTCTAATTA-CTCAGATACTGACCAATCAAAGACTGACTTTGCAACTTGCGTCAAGGGAAGATGCTAAATGTTAGATGAATACGCAGCTATAGGGAATATATAAAAGACCAGGTGAGGAAGACACAAACCAAACTCAGAAACTTCTCCT----CACAGAACAACCAAATTGACTCCAGACACCATGGCCTGCTGCGCTACTAGTTTCTGTGGCTT-----------TCCCA-----------------CTTGCTCCACTGGCGGCACATGTGGT s rn3.chr10 22178846 763 - 110733352 TATATACATATAT-ACATATATGTGTTTTGTC------CATAT------------------------ATACATATAT------------------------------------------ATGTATAGAAGCATGAAGACAGAAAATGATGGAAAAGGCAAAGTCGTCAAAGGCTTGGGTTTTCAAAGTGTGCATTGATGACC-CAAAAGGAAGTATCATT-----GATCTGTAATCAT--TCTAATCTGCACAGTCTGATCCCAGGAAGGCCGACTTTGCTTGGATGCTG----ATCAGCTA-AACAGCTCATGTTTTGATGACACCAATATTAGTCTTACCGAGTCTGAGTAAA--CTGTTTATGAAATGATGAT-TGTTACTGAGTGGATGCTAAGGAAATAAATTTTCAGTTTGGATAAACTG-GGCCT-AAGGTTATCAAAGGTCAGCTGAGACAAAGCAAGCCAGGGTAGT----------------ATATGACATGTGACTTTTATAGAGGA---CTACTGTGCTTGG------TAATACACCTTCTCTTAGACTAGAGAGAAAAGAGGAAGCACAGTGCCACTTAATTGATCACTGACTATAGCAGATGCTGTAAACACTGTTTATAGTTTTTTCAATTATTCAGGTACGGGCCAATCAAAGACTGACTTTGCAACTAGTGTCAAGGGAAGACGCTAAATCTTAGATGAATACGTAGCTATAGGGAATATATAAAAGGCCAGGTGAGGAAGACACAACCAAAACTCAGAAACTTCTCCT----CACAGAACAACCAACTTGACTCCTGACACCATGGCCTGCTGTGCTACTAG-----------CTTCTGTGGCTTTCCCA-----------------CCTGCTCCACTGGTGGCACCTGTGGC s canFam1.chr9 14311257 789 + 53642819 TATGCACCTGTGT-AC---TGTTTGACTTGTTAAAACACGTATTCATCACTG---------------AATTTTATTTTTA---------------------------------------ATTTA-------GTAGAGTCAGAAAACAATCTACTAGCAAAAGTCATTAAAGGTTTCAACTGGGAATATGTACACTGATGGTT---GAAGGCAAAAATACTGGTTAGAGCTCTTAGTGTCCTATAACTTGCACAAACAGATCCTAGGAAGGCATAGTTCTTTTGGATGTTG----ATTAATTTGGATAGTTCATGTTTTGATGACCCTAATATCAGCCATTCCAAATCTGAACAAATTCTTTTTATGAAGTCCTGATCCCTAATTTAATGATCACTTAGGAAGAAAATGTTCAGTTTAGATAAACTC-GGTCTCAAGGTTAACAAAGGATAGGTATGATAAAGCAAACCAGGGTTAG------CCCAACTCTAGTCTGTCATGTGATTTGCATAAAGAGGTGTTGCTCTGATTGGCTTCCATAATGA------------TCCAGAGAGCAAAGACAAAACATAATGAGATCTAATTGAATAATGACCA-AGCAGTCTATTGAAATGCTATTTATAACTTTCTAAACAACTCAAGTATCAGCCAATCAGAGACTTACTTTGCAAATGGTATCAAGGAACAATGCTGAATGTTAGGGAAATAGGCAGCTCTAGGAAATATATAAAAGGCCAGATGTAGAAGGCGCAGCCAAAACTCAAAAACTTCTCTTTAACAACCCAGCTCTTAACCTAAGTTCTG--ACCATGGCCTGCTGCTCCACTAG----------------------------CTTCTGTGGATTTCCCACCTGCTCCACCAGTGGGAACTGTGGC a score=21374.0 s hg17.chr17_random 2530623 30 + 2618010 TCCAGCTGCTGCCAGCCAAGCTGCTGTGAA s panTro1.chr19 42799015 30 - 82489036 TCCAGCTGCTGCCAGCCAAACTGCTGTGAA s mm5.chr11 22394169 30 - 121648857 TCTAACTGCTGTCAGCCCAGCTGCTCCCAA s rn3.chr10 22179759 30 - 110733352 TCCAGCTGCTGTCAGCCCAGCTGCTGCCAG s canFam1.chr9 14312046 30 + 53642819 TCCAGCTGCTGCCAGCCTAGCTGCTGTCAG a score=391901.0 s hg17.chr17_random 2530653 866 + 2618010 ACTAGCTGCTGCCAGCCAAGC---------------------------------------------------------------------------TGCTGCCAGACCAGCTCCTGCGGAACCGGCTGTGGCATTGGTGGTGGCATTGGCTATGGCCAGGAGGGCAGCGGTGGATCTGTGAGCACCCGTATCAGGTGGTGCCACCCAGATTGCCACGTGGAGGGCACCTGCCTGCCCCCCTGCTACCTGGTAAGCTGCACACCCCCATCCTGCTGCCAGCTGCACCACGCCGAGGCCTCCTGCTGCCGCCCGTCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTGCCACTGC------------------------------TGTGAGCCCAC--------------------CTGC------------------------------TAAAAGCCAGGTTGCTGATCGCTTAAGAATGAAAGGGGAAGCACAGCAAAATTGTGCTGATTTCTGAAGAACTGTTCGATTTTACTTGGATGCTAAGTACCATGATGTTGTTAAGCTGCTCAGAGATAATGAAACTCCTAGTTAGGA-CACTGTGGATGTGCC-GAATTCACTTACTGAA-AGATGTATCAATCAG--TGT-TCTGGATAGCTTGCGTTGCTTGAGCAGAGGAC-CAGGATGGAATAGTTCATCATTTCAGTGACATCTCTGCTCCCCCAACTCTCTCTTGATGCTCATGCATCTTCAGACCTGGTTTTTCCTTGAATAT-CTCTGATTAATCCAAATAAAATGTTTTAATGTGCA-AAGCAAACTGAGTTATGTCC-TCCTTCTACCTTTAAACATGTCTTCTTGTAGCTGGTATTCAAG--------AGTGGATTTGCAATTTGATAATAATACCAAGGCATAACCATAAAGTCTAAACCAGAAAGATTAAATACAAAGTAAATTATGCTTGAATCCATCAGCTTA--AAAATGCTCCATGAATTAAAGAATTTTTATAG---TTCAAATATTTACA s panTro1.chr19 42799045 865 - 82489036 ACTAGCTGCTGCCAGCCAAGC---------------------------------------------------------------------------TGCTGCCAGACCAGCTACTGCGGAACTGGCTGTGGCATTGGTGGTGGCATTGGCTATGGCCAGGAGGGCAGCGGTGGAGCTGTGAGCACCCGTATCAGGTGGTGCCACCCAGATTGCCACGTGGAGGGCACCTGCCTGCCCCCCTGCTACCTGGTAAGCTGCACACCCCCATCCTGCTGCCAGCTGCACCACGCCGAGGCCTCCTGCTGCCGCCCGTCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTGCCACTGC------------------------------TGTGAGCCCAC--------------------CTGC------------------------------TAAAAGCCAGGTTGCTGATCGCTTAAGAATGAAAGGGGAAGCACAGAAAAATTGTGCTGATTTCTGAAGAACTGTCCGATTTTACTTGGATGCTAAGTACCATGATGTTGTTAAGCTGCTCAGAGATAATGAAACTCCTAGTTAGGA-CACGGTGGATGTGCC-AAATTCACTTACTGAA-ACATGTATCAATCAG--TGT-TCTGGATAGCTTGCGTTGCTTGAGCAGAGGAC-CAGGATGGAATAGTTCATCATTTCAGTGACATCTCTGCTCCCCCAACTCTCTCTTGATGCTCATGC-TCTTCAGACCTGGTTTTTCCTTGAATAT-CTCTGATTAATTCAAATAAAATGTTTTAATGTGCA-AAGCAAACTGAGTTATGTCC-TCCTTCTACCTTTAAACATGTCTTCTTGTAGCTGGTATTCAAG--------AGTGGATTTGCAATTTGATAATAATACCAAGGCATAACCATAAAGTCTAAACCAGAAAGATTAAATACAAAGTAAATTATGCTTGAATCCATCAGCTTA--AAAATGCTCCATGAATTAAAGAATTTTTATAG---TTCAAATATTTACA s mm5.chr11 22394364 850 - 121648857 TCCAGCTGCTGCCAGCCCAGC---------------------------------------------------------------------------TGCTGTCAGACCAGCTGCTGTGGAACTGGCAG------------------------TGGCCAGGAGGGTGGCAGTGGAGGCCTGAGCTGCCGTGTTAGATGGTGCCGCCCTGACTGCCGTGTGGAGGGCACCTGCCTGCCCCCCTGCTGTGTGGTGAGCTGCACACCCCCAACCTGCTGCCAGCTGCACCATGCCCAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTGCCACTGT------------------------------TGTGAGCCCAG--------------------CTGCTCTAAGCCCAGCTGCTCTGAGCCCAGCTGTTAAGAACCAGGTTCCTGAATAGTTAGAAATGCAACAGAAAGCCCTGAAGAATTGTGTGGACTGCTGAGGATGTGTTCTGTGTGG--TGGATGCTAAGTATCTTCATGTTGTTAACCTGTTCCTGGA-GGTGGAACTCTTCATCAGGATCCCCAAAGGCGTGCTGGAATTAGTCCACTGAACACGCGTCTCAATCAGCATGT-TCCAGGGACCCTTCTTTGCTTAGATGATGCACAAAGGATGCAGCAGTACATCATTCCAGTGAGGTGTGGACTTTATTCCCTAGTCCTCGGTCCCCACACGTCTTCCATCAAGCTTTCCACTTGAAGAGACCCCGATGCTCTCAAATAAAGTGTTT---TGTGCACAAGTGAATAGATTTCTGTGC-ATCTTCTAATTTTAAGC-TGCCCATCTATAGA----------------------------------TGATAGTAATCTTCAGGCATAGGCACATAATCTAAAGCAAAATGGTTGTATGAAAATTAACTTATGTTTGAAT-CGTCTGCTAAT-AAAATGTTCTGTGCATTAAATAATATTCATGGCTATTTAAATGTGTGAA s rn3.chr10 22179789 855 - 110733352 ACCAGCTGCTGCCAGCCTACC---------------------------------------------------------------------------TGCTGTCAGACTAGCAGCTGTCAGACCAGCTG---------CTGTGGAACTGGCAGTGGCCAGGAGGGTGGCAGTGGAGCCACGAGCTGCCGTGTTAGATGGTGCCGCCCTGACTGCCGCGTGGAGGGCACCTGCCTGCCCCCCTGCTGTGTGGTGAGCTGCACACCCCCAACCTGCTGCCAGCTGCACCACGCCCAGGCCTCCTGCTGCCGTCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTGCCACTGT------------------------------TGCGAGCCCAGTTGCTCTAAGCCCAGCTGCTCTGA--------------------GCCCAGCTGTTAAGACCCATGTTCCTGAGTTGTTAGAAATGAAATGGAAAGCACTGAAGAGTTGTGTAAACTGCTACGGACATGTTCTGTGTGG--TGAACGCTAAGTATCTTCACTTTGCTAACCTGTTCATC-ATAGTGGAACTCTTCAACAGGATCCCCACAGACGTGTTGGAATTAGTGCACTGAACACATGTCTCAATCAGAATGT-TCTGGGGATCTTTCTTTGCTCAGGTGACACAC-AAGGATGCATCAGTACATCATCCCAGTGACTTGTGGACGTTCTC------CTCTAGTTCCCTACACATCTTCAGCCATGCTTTCTACTTGAAGAGACCCCGATGCTCTC----AAAGTGTTT---TATGCCCAAGTGAATAGATTTCTGTTC-ACCTTCTAACTTTACGC-TGCCCC-----------TGTTTAAA-----------------------TGATAGTAACCTTCAGGCATAGACACATAATCTAAAGCAAAATGGTTTTATGAAAATTAACTTATGTTTGAAT-TGTCTGCTAATAAAAATTTTCTATGCATTAAATACTCTTCATGGCTATTTAAATGTGTGAA s canFam1.chr9 14312076 971 + 53642819 ACCAGCTGCTgccagccaaccagctgccagaccagctgctgccagccgagctgctgccagccaaccagctgccagaccagctgctgccagccaacttgctgtcagaccagctgctgccagccCAGCTGTGGGACTGGCTGTGGCATTGGTGGTGGCCAGGAGGGTGGCAGTGGAGCTATGAGCTGCCGAGTCAGGTGGTGCCGCCCTGACTGCCGCGTGGAGGACACCTGCCTGCCCCCCTGCTGCGTGGTGAGCTGCACACCCCCAACCTGCTGCCAGCTGCACCATGCCCAGGCCTCCTGCTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTCCTACTGCTGCCAGCCCACCTGCTGCCAGCCCACCTGTTGTGGGCCCAC--------------------CTGC------------------------------TAAAAGCAAGGCTGCTGATTAATCAAGAATGAAATGGGAAGC-TAAATCAGCTGCTCTGATCTCTGAAGAAGTGTTCAATTTTA---------TTCCCATCATGATGTTTCTAAGCCAATCAGAAATAATGAA--TCTTAATCAGGCCCCTCTTGGATGTGCT-GAATTAGCACAGGGAATACATGTATCAATCAG--AGTATCTAGATATCCTGCCTTG-TTAGAGAAGGCAT-CAGGGTAGGGTATTTCTTTATTTCAGTGACATCTCCCGTCTCCTCCCTATCTTTTGATCCCTGCATATTTTTAGATTTGCTTTCTCCTTGAATATACCAT--TAATTTCAAATAAAATGTTTAAATGTGTA-AAGCAAACTGAGTTATTTTCTTTTTTCTACCTCTAAGCTTATCCATCTTTAGTTGGAATTCAAGTTAGTTTAGTTGGATTTGCATTTTGATAATAATCTTAAAGCATAA--ACAAAATCTAAACTGGAAAGATTAAATATTAATTACATTATGCATGAATCCATCAGTAAGT-AAAATGTTCCATGCGTTAAATAATCTTTATAGTTATTCAAATACTTAAA a score=181891.0 s hg17.chr17_random 2531519 515 + 2618010 TGCTCTAATCTATTATGATTAGGTCTAGACCA-----ATAAAGGTTGACCTTTAGCTAAAATGTTAAGGTTGATCAAAGCTAT-TGATTTCTATCTAAATGTAATTCTACCATCTTTTGTCTCCTTCCATTTA----ATATACTAAATG--TTCTCCTTCATTTATGCCCCAAAATCTAAAGAAATTG---CATTACCTTCTAAATAGATTTAAAAATAGCTACTAGATACTACCT----------ATTTTCCAAGAGAATTTAGGTTTAATTTCTACACCTTAGCCTTTCACATTCTTCCCACTGATCCTTGAATTGCTCTCTAAGCTTCAACTCCCACTATTCACCTTCATTTGATGTACGTATGCATAAGGTGTATCTTTGGTCTAAAT-GATAGTAGAAGAAACAGCTATAGAGAGCACCCGCTGAGTTCTACCATTGCCATTTGTCAGACAGAAGTGTTAGAAATCTGAAACAGCTCGATTATATTTTGCACTTTGCAACCCAACTTAAAAGATAT------TCTCTTAAGAAGTTAACACg s panTro1.chr19 42799910 515 - 82489036 TGCTCTAATCTATTATGATTAGGTCTAGACCA-----ATAAAGGTTGACCTTTAGCTAAAATGTTAAGGTTGATCAAAGCTAT-TGATTTCTATCTAAATGTAATTCTACCATCTTTTGTCTCCTTCCATTTA----ATATACTAAATG--TTCTCCTTCATTTATGCCCCAAAATCTAAAGAAATTG---CATTACCTTCTAAATAGATTTAAAAATATCTACTAGATACTACCT----------ATTTTCCAAGAGAATTTAGGTTTAATTTCTACACCTTAGCCTTTCACATTCTTCCCACTGATCCCTGAATTGCTCTCTAAGCTTCAACTCCCACTATTCACCTTCATTTGATGTACGTATGCGTAAGGTGTATCTTTGGTCTAAAT-GATAGTAGAAGAAACAGCTATAGAGAGCACCCGCTGAGTTCTACCATTGCCATTTGTCAGACAGAAGCATTAGAAATCTGAAACAGCTCGATTATATTTTGCACTTTGCAACCCAACTTAAAAGATAT------TCCCTTAAGAAGTTAACACg s mm5.chr11 22395214 448 - 121648857 TG------TTTATTA-AAATGGACCCAGACCA-----ATAGAG--TTACCCTT---------------------------CAT-GGACTTT-------------TTATACCAACTCAAACCTTGTCCCATTTA----ATACAGTAGATG-ATTTTTCTTTATCCATGCAC---AACATAAAGAAACTAGATTATTATCTACTAACTCTTTTGCTAAATATCTGCCA-ATACCA---------------TTTCCAATAGAACTTGGGTTCAGTTCCTACAACTTGGCCT---AACTCCATTCTGCTGATCTCCA----GCTGTATAAACTTCAACTCCCAGTATTCACCTGCACTTACTGGGTGTATG----AGGGATACATCTGTACTAGAT-AAGAGTAGAGCAAGCAGCTTTGAGGTATAACTGCTGAATTCCACCACCAC-----ATCATACAAATGCCTTAGAAATCTCAAACAGCAATATCACAATTTATAATTTGCAATCCAATTGAAAAAAAAT---GCCTTTCTTAAGAAGTTAACACA s rn3.chr10 22180644 452 - 110733352 TGT-----TTTATTA-AAATAGACCCAGACCC-----ATAGAG--TTACCCTG---------------------------CAT-GGACTTT-------------TTATATCAAGTTTAACCTTGTCCCATTTA----GTACAGTAGATTTTTTTTTCTTTATTCATGCACT--GCTTAAAAGAAACTA---GATTATCTACCAAGTAGATTGGAAAATATCTGCCA-GTACTA---------------TTTCTAATAGTACTTGGGTTTAATTCCTACAACTTGGCCT---AACTCCACTCCACCGATGTCCA----GCTGTGTGAGCTTCAACTCTCAACATCCAGATGTACTTACTGGGTGGGTG----AGGGATACATCTGTACTTGACAGAGAGTAGAGCCAGCAGGTGTGAGGTGTAACTGCTGAGTTCCACCATCAC-----ATCATACAGACGCATTAGAAATCTCAAACCGCAGCATCACAGTTTGTAACTTACAAGCCAATTGAAAAAAAAAAATGCCTTTCTTAAGACGTGAACACA s canFam1.chr9 14313204 521 + 53642819 TGCTCTAACCTATTATGATTAGGTCTAGACAATAGACCTAAAG--CCACTTTTGGCTAAAAATTTTAGGTTGCTCAAATCTATGGGATTTCCACCTAGATATACCTCTACCAT-TTTAATCTCCTTGCAGTTAGTTTATACACCAGATG-GTTCTCCTTTATGCATGCCT---AATATCTAAAGATTA---TATTACTTACTAAATAGATTTTAAAATATCTACCAGATACTATCTATTAGATGGCATTTTCCAAGAGCATTTAGGTTTAATTCCTATGTCTTAGCCTATTATATTCTTCCCACTGATCCCCAAATTACTCTTCAAATTTCAACTCCCAACACTCACCTCCATTTACTGTAAGTGTGTATAAAGTGTA--TCTGATCTAAAT-GAGGGTAGAACAAAAAGCCAGGGAGATTTTCTG-TGAGTTCTACCAACACCAATGGTCAGACACATGCATTAGATATCTCAAACTA------TATATGTTGCACTTTGTAATCCAATTTGAAAGATGT------TCTCTTAGGAAGTTAACACA a score=26297.0 s hg17.chr17_random 2532034 300 + 2618010 ctggacacggtggcttacgcctgtaatcccagcactttgggaggctgagatgggtggatcacgaggtcaggagattgagaccatcctgactaatatggtgaaacccagtctttactaaaaatac---aaaaaaaaaattagtcaggtgtggtcgtgggtgcctgcagtcccagctacttgggaggctgaggcaggagtatggcgtgaacctgggaggcagagcttgcagtgagccaagatcacgccactgcactccagcctgggcaacaagcaagactctgtctc-----aaaaaaaaaaaTTAACAC s panTro1.chr19 42800425 308 - 82489036 ctgggcacggtggcttacgcctgtaatcccagcactttgggaggctgagatgggtggatcacgaggtcaggagatcaagaccatcctggctaatatggtgaaacgcactctttactaaaaatacaaaaaaaaaaaaattagccaggcatggtcgtgggtgcctgcagtcccagctacttgggaggctgaggcaggagtatggcgtgaacctgggaggcagagcttgcagtgagccaagatcacgccactgcactccagcctgggcaacaagcaagactctgtctcaaaaaaaaaaaaaaaaTTAACAC a score=460031.0 s hg17.chr17_random 2532334 1148 + 2618010 AACCTAGAACAAAACAAAACATATTTTACCATTTAATTTTTAAATTCTTCATTAGGCATTAGAGTGTAATACACAAAATACAATAGGATGCAAATATAGAAA-------GAAACACGTTTTCCACATTATTTACAAGCTCCCAGAACTTACCTCTAT-ATTTAATTGGTAGCAATGATGGATTACACACAAAATTATGCAATTTCCAAGAGGAATAAAGTAGATGGCAGTACATTT-TTCAAAGTGTCATAACTCCTAGATATTTTTTCCCGAG-CCCGGTTCCACTACTAAATCCAA---------------AAAATAAAATAAAATAAACCAAAAAACACATTTCCTAGTCTCTTT-----ACAGCAAATAACAAGACTCTTTCATGAGAAGTACTACAGCTTGAAAGTTCTCTTTAATCATGTTTGAGTGGTATTGATATCCATGAATCAAGCCTTTTACTCCA-CCTATTCAATAAACATTTATTGAATCAGATTCAGTAAACATTTATTAAGGTTCTACCACAAACTAAGGACTCTGCTGGATACCTTCCTA-----------------------AATACTATGTCAGTTTGGTTCCCAAGAACAGA----TTTCTGGTCTGGAACAGGAATAATAGTCACACATTCCAAATTGGTTGAAATCAAAGGAACTATAATCGGTAATTCAATAAGACATTGGAACAAAAAAAGGTGAAA---TCTGCGAATTATGTATGACCAAAGGTATTCCTTCAGTTCAGTAGATATCCAGATATCCAAAATTCAATAAAATTTAGTCTATATATCTAGGAGG-AAAAAATAATAGTTAAATATAACAGCACAATTATTACTCTTAGCCTTAGAGGTATGGATAGAT-TGTCACGTGGAATAACTA-TTATGTAAAATGAGAGCATTCATTTGGACTAAAATGGAAGTACTCTTTGAACATGGGAAACCACAAACA-TATTCCAAAGAGCAAAGGACTGATATGAGGAGTCCAGAAGAAACTATAAAACA--GTAATTTCTAAACTATTGCTCATAATGTGTCACAAGTATTTCAACATAAGCCAATCAGAGATCCACGGAGTAACAAATTTAAAC-AAAAACAAAGAAAATATGTTAACAATTTTGTAAACAGCAGCTGGTTCAGATATATAAAAGGACCAACGTGGAAGTCACCACCAAACCTCAGAAACTCCTCCAAG s panTro1.chr19 42800733 1163 - 82489036 AACCTAGAACAAAACAAAACATATTTTACCATTTAATTTTTAAATTCTTCATTAGGCATTAGAGTGTAATACACAAAATACAATAGGATGCAAATATAGAAA-------GAAACACGTTTTCCACATTATTTACAAGCTCCCAGAACTTACCTCTAT-ATTTAATTGGTAGAAATGATGGATTACACACAAAATTATGCAGTTTCCAAGAGGAATAAAGTAGATGGCAGTACATTC-TTCAAAGTGTCATAACTCCTAGATATTTTTTCCCGAG-CCCGGTTCCACTACTAAATCCAAaaaataaaataaaataaaataaaataaaataaaCCAAAAAACACATTTCCTAGTCTCTTT-----ACAGCAAATAACAAGACTCTTTCATGAGAAGTACTACAGCTTGAAAGTTCTCTTTAATCATGTTTGAGTGGTATTGATATCCATGAATCAAGCCTTTTACTCCA-CCTATTCAATAAACATTTATTGAATCAGATTCAGTAAACATTTATTAAGGTTCTACCACAAACTAAGGACTCTGCTGGATACCTTCCTA-----------------------AATACTATGTCAGTTTGGTTCCCAAGAACAGA----TTTCTGGTCTGGAACAGGAATAATATTCACACATTCCAAATTGGTTGAAATCAAAGGAACTATAATCGGTAATTCAATAGGACATTGGAACAAAAAAAGGTGAAA---TCTGCGAATTATGTATGACCAAAGGTATTCCTTCAGTTCAGTAGATATCCAGATACCCAAAATTCAATAAAATTTAGTCTATATATCTAGGAGG-AAAAAATAATAGTTAAATATAACAGCACAATTATTACTCTTAGCCTTAGAGGTATGGATAGAT-TGTCACGTGGAATAACTA-TTATGTAAAATGAGAGCATTCATTTGGACTAAAATGGAAGTACTCTTTGAACATGGGAAACCACAAACA-TATTCCAAAGAGCAAAGGACTGATATGAGGAGTCCAGAAGAAACTATAAAACA--GTAATTTCTAAACTATTGCTCATAATGTGTCACAAGTATTTCAACATAAGCCAATCAGAGATCCACGGAGTAACAAATTTAAAC-AAAAACAAAGAAAATATGTTAACAATTTTGTAAACAGCAGCTGGTTCAGATATATAAAAGGACCAACGTGGAAGTCACCACCAAACCTCAGAAACTCCTCCAAG s mm5.chr11 22395662 1077 - 121648857 AACCTAGAACAAAAGGAGGTAGAGTCTATCATGTAATTTT--AGTTCTTATATAAGCAGTTGACTA-AATACACAAAATACATAAAGACTTAA-----------------GACTTTTTTTTTCAGGATATTTACAAGTCCCCACCACTTACCTCTCTCATTAAATTGGCAGCAACGATGGATTACAAATAGAATGGTACA-TTCCAGAAAAGAGAGAATTGAATGACTGT---------------------ACTCCTAGATA-TTTTTCTCAAG-CTTTTTCCAACCACTAAATTCAG---------------ACA-------AAAATAGCTCA------CTATTCCCTACTGTCTTC-----ACGGCA------AAGAAGTCTTTGTGGGCAGCGCTACAACTTGAAAGTGCTC-TTACTCACTCTTGAGTGGTTCAGGCGTTCATGAATCATACCCTATACTCCGCCCCCCTTAGTTAATCACCCCTGAATCAGATTCAGTAAACATTTAATAAGAATATGCGAAAATCAG--------TCTGGATACTTTCTGAAGAGAAAAAGAAAAAAAAAAAATAAAAACAAGTCA-TTTAGTTCACAGTGAAAGAA--CTCTCTGGCCTGAAATACAAATAACGCTTACACATTTCCAATCTATTGAAATGGAAAGAGCTACGA-------------AGACCATTTGATT-----ATGGTGACAGTGTCGATGGGGTAGATGTTAC---ATGTATGC--TCAATTTGGCAAATACACCAATGCTTTAAATTCAATAGAATTTAGTCTATCTATGCAAGAGA-GAAAAATAATGCTTG-----AAAGGCAGTCATATGGCCTTCTGCTTCAGAGGTTTGGCTAGAC-GGCCAAGTGGAATGACAA-CTATTCAGAGTAAGGGTGTTGTCTTAACCTACAGTAAGAAGACTCTTTGAACAT-GGAAACCACAAACGCTACTCCAAAGAGTATGCGGCCAATAGAACGAGTCACAGCGACCTTATAAAACA-----------AAACCATC-CCCATAATATGTCACAAGTATTTCAATGGAAGCCAATCAGAGGACCACTGAGGAACAAATTTAAACAAAAAACAAGAAAAATATGTTAAGAATTTTATAAACAGCAACTTGCTTGACTATATAAAAGGCCCCATGCTCAGGTTTGCTCCCAAACTCAGAAACTCATCCAAC s rn3.chr10 22181096 1095 - 110733352 AACCTAGAGCAAAAGGACATAGATTCTATCGTGTAATGTT--AATTCTTATACAAGCAGTTGACTACAATACACAAACTACATAAAGACCTAA------------------GAAATTTTTTTCAGGCTATTTACATATCCCCAGCACTTACCTCTCTCGTTAAATTGGCTGCCATGATGAATTACAAACAAAATGGTACA-TTCCAGAAAAGAGAGAATTGGATGACTGTACATTTGTCCAAGGTGTCATCGCTCCTGGATA-TTTTTCTCAAG-CTTTTTCCAACCACTAAATTCAA---------------ACA-------AAAATAGCTCA------GCATTCCCCAGTGTCTTC-----ATGGCA------AATAAGTCTTCGTGGGCGGCGCTACAACTTGAAAGTGTTT-TTACTCATTCTTGAGTGGTGCAGGCGTTCGTGAATCATACCTTATACTCCA-CCCCCTCAGTTAATGACCACTGAATCAGATTCAATAAACATTTAATAAGAATATATGAAAATCAG--------GCTGGAAACTTTCTGA-----------------AAAAAAATAAACAAGTTG-TTTGGTTCACAGTGAAGGAACTCTCTCTAGCCTGAACTCTAAATAATGCTTACATATTTCCAATCCATTGAAATGAAAAGAACCAGAAAGACCATTTGACTCTGGTGCTGGAGTCAATGTGGTAGATG---TTTCC--ATTGCATGTGACCAAAGTTGTGC--TCAATTTGGCCAGTCCGCCAGTGCTTTAAATTCGATAGAATTCAGTCTACATATGCAAGAGA-GAAAAGTCATTCTTGA----AAAGACCCA---ATTGCCTTCTGCATTAGGGGTTTGGGTGGATGGGCCAAGTGGCATGACAA-CTATTCAGAATCAGGGCGTTGCCCTAACCTACAGTGAGAAGACTCTTTGAACAT-GGAAACCACAAACACGACTCTAAAGAGTATGTGGCCAATAGAACGAGTCACAGCGACCTTATAAAACA-----------AAACCATC-CCCATAATATGTCAC-AGTATTTCAATGGAAGCCAATCAGAGGACCACTGAGGAACAAATTTCAAC-GAAAACAAGAAAAATATGTTAAGAATTTTATAAACAGCCACTCGCTCGACTATATAAAGGGCCCCATGCTCAGGTTTGCACTCAAACACAGAAACTCATCCAAC s canFam1.chr9 14313725 1094 + 53642819 AATCTAGAACAAA---AAATACATTTTACCATTTAATTTTT-AATTCCTCATTAAGTATTTTAATGCAACATCCAAAATAAAATAGGACAAAA-TATAGGACACTTTATGTAAAATATTTTCCAAGTTATTTACAAGATCCCAGCACTTACCTCTATCATTTAATTGGCAGCAATGATAGAT--CAAATGAA---------TTTC---AAAGAATATAATAAATGGCGATGCATTC-TTCAAAACATCATAAATCCCAGATGGTTTTCCCTGAGACTTGGTTCAACTATTCAATGTAG---------------A---------AAAATATTTCA------GCACTTCCTAGTCTCTTTTGACAATGACA------GGGACTCCTCCATGGACGGCGCTACAGCTTGAAAGTTCTATTAAATCATTTGTAAGTGGTCCATGTGTCCATGAATCATGCCTTTTACTCCA-CCTATTCAA-------------AATCAGATTCAGTGAGCATTTACTGAAGTTCTACCTGAGGCTTAGCACTCTGCTAGATACTTTTATA-----------------------TAAACTATGTCA-CTTGGTTCACAAGAAAAGA----TTTCTCATCTAGAACATGAACAATATTTACATATTTCAAACTGATTGAAATCAAAGAAATTATAA-CAGTAATTTGATGTGATGTTGGAGT-----AAACTAGAA---GCTTTTAGTTACGTATAACCAAAGGTACTC-TTCTATTCAGAGGAAGTCCCAATGTCCTAAACTCAACAGAATTCAGTCTATACAGCCAGAAGGAAAAAAATAATAGTTGAAAATAAAAGCACA---ATTATCCTTAGCCTTAGAGATATGAATAGAG-TGTCACGTGGAATAACCACCTCTACAAAATGAGGGTGTTGACATGGAGTAAAATGGACAGACTCTTTGAACATGGAAAACCACAAATG-TATTCCAAAGGGCAAAGGACCAATATGAGGAGTTCAAATGAAACTATAAAACGAAGTAATTTCTAAACTGCTGCTCATAATGGGTCATAAGTATTTCAATGTAAGCCAATCAGAGGACCAATGAGGAACAAATTTAAAC-AAAAACAAGGAAGATATGTTAAGAATTTTATAAATAGAAGCTGGCTCAGATATATAAAAGGCCTGACATAGACCTTACCACCA--------AAACACCTCCAAG a score=43079.0 s hg17.chr17_random 2533482 128 + 2618010 CAACCTAACTCTTAACCCAACTTCTGACACCATGACCTGCTGCCAGACCAGCTTCTGT------GGATAT--CCCAGCTTCTCCATCAGTGGGACCTGTGGCT-----CCAGCTGCTGCCAGCCAAGCTGCTGTGAGACCA s panTro1.chr19 42801896 128 - 82489036 CAACCTAACTCTTAACCCAACTTCCGACACCATGACCTGCTGCCAGACCAGCTTCTGT------GGATAT--CCCAGCTTCTCCACCAGTGGGACCTGTGGCT-----CCAGCTGCTGCCAGCCAAGCTGCTGTGAGACCA s mm5.chr11 22396739 41 - 121648857 CTACTCAACATCCAA-CCAACTCCTGACAACATGGCCTGCTG--------------------------------------------------------------------------------------------------- s rn3.chr10 22182191 127 - 110733352 CTACTCAACATCCAA-TCAACTCCTGACACCATGGCCTGCTGCTCTACTAGCTTCTGT------GGCTTT--CCCACCTGCTCCACTGGTGGCACCTGTGGCT-----CCAGCTGCTTCCAGCCCAGCTGTTGTGAGACCA s canFam1.chr9 14314819 126 + 53642819 CAACCCAACTCTCAACCCAGCTCCTGAC--CATGGCCTGCTGCTCCACTAGCTTCTGT------GGATTT--CCCACCTGCTCCACCAGTGGGAACTGTGGCT-----CCAGCTGCTGCCAGCCTAGCTGCTGTCAGACCA s danRer1.chr2 4850408 136 - 32943701 CAGTCCGGCTCTTTGCTCTACCGACCTCGCTCGGGCTCTTTGCTCTGGCAGCTCCTGTCCCGCCGGCTCCAGCCCAGCTGCCTCCT-----GTCCCGCTGGCTCCAGCCCAGCTGCCTCCTGTCCCGCCGGCTCCAGCCCA a score=59970.0 s hg17.chr17_random 2533524 86 + 2618010 CCAGACCAGCTTCTGT------GGATAT--CCCAGCTTCTCC----ATCAGTGGGACCTGTGGCTCCAGCTGCTGCCAGCCAAGCTGCTGTGAGACCA s panTro1.chr19 42801938 86 - 82489036 CCAGACCAGCTTCTGT------GGATAT--CCCAGCTTCTCC----ACCAGTGGGACCTGTGGCTCCAGCTGCTGCCAGCCAAGCTGCTGTGAGACCA s mm5.chr11 22394117 86 - 121648857 CGCTACTAGTTTCTGT------GGCTTT--CCCACTTGCTCC----ACTGGCGGCACATGTGGTTCTAACTGCTGTCAGCCCAGCTGCTCCCAATCCA s rn3.chr10 22182232 86 - 110733352 CTCTACTAGCTTCTGT------GGCTTT--CCCACCTGCTCC----ACTGGTGGCACCTGTGGCTCCAGCTGCTTCCAGCCCAGCTGTTGTGAGACCA s canFam1.chr9 14314859 86 + 53642819 CTCCACTAGCTTCTGT------GGATTT--CCCACCTGCTCC----ACCAGTGGGAACTGTGGCTCCAGCTGCTGCCAGCCTAGCTGCTGTCAGACCA s danRer1.chr2 4850450 94 - 32943701 CTCTGGCAGCTCCTGTCCCGCCGGCTCCAGCCCAGCTGCCTCCTGTCCCGCTGGCTCCAG----CCCAGCTGCCTCCTGTCCCGCCGGCTCCAGCCCA a score=2000.0 s hg17.chr17_random 2533610 2 + 2618010 GC s panTro1.chr19 42802024 2 - 82489036 GC s mm5.chr11 22394203 2 - 121648857 GC s canFam1.chr9 14314945 2 + 53642819 GC s danRer1.chr2 4850544 2 - 32943701 GC a score=22663.0 s hg17.chr17_random 2533610 108 + 2618010 GCTGCTGCCAGCCAC------------------------------GCAGCTGCCAGACTAGCTTCTGCGGATTTCCCAGCTTCTCAACCAGTGGGACCTGCAGCTCCAGTTGCTGCCAGCCAAGCTGCTGTGAGACCA s panTro1.chr19 42802024 138 - 82489036 GCTGCTGCCAGCCACGCTGCTGTGAGACCAGCTGCTGCCAGCCAAGCTGCTGCCAGACCAGCTTCTGCGGATTTCCCAGCTTCTCAACCAGTGGGACCTGCAGCTCCAGTTGCTGCCAGCCAAGCTGCTGTGAGACCA s mm5.chr11 22396780 86 - 121648857 --TGCT--------------------------------------------------ACTAGCTTCTGTGGCTTTCCCACTTGCTCCACTGGTGGCACCTGTGGCTCCAGCTGCTGCCAGCCCAGCTGTTGTGAGACCA s canFam1.chr9 14314945 60 + 53642819 GCTGCTGCCAGCCAA------------------------------CCAGCTGCCAGA------------------------------------------------CCAGCTGCTGCCAGCCGAGCTGCTGCCAGACCA s danRer1.chr2 4850544 105 - 32943701 GCTGCCTCCAGTCCC------------------------------GCCGGCACCAGACCAGCTGCCTCCAGTCCCTCCTGCACCAGACCAGCTG--CCTCCAGTCCCTCCTGC-ACCAGACCAGCTGCCTCCAGTCCC a score=10574.0 s hg17.chr17_random 2533718 78 + 2618010 GCTGCTGCCAGCCAAGCTGCTGTGAGACCAGCTGCTGCCAGCCAAGCTGCTGCCAG----ATCAGCTCCTGCGGAACTGGCT s panTro1.chr19 42802162 48 - 82489036 GCTGCT------------------------------GCCAGCCAAGCTGCTGCCAG----ACCAGCTCCTGCGGAACTGGCT s mm5.chr11 22396866 33 - 121648857 GCTGCTTCCAGCCAAGCTG-------------------------------------------------CTGTGGGACAGGCT s rn3.chr10 22182318 33 - 110733352 GCTGCTTCCAGCCAAGCTG-------------------------------------------------CTGTGAGACAGGCT s canFam1.chr9 14315005 60 + 53642819 GCTGCTGCCAGCCAACTTGCTGTCAGACCAGCTGCTGCCAGCCCAG----------------------CTGTGGGACTGGCT s danRer1.chr2 4850649 82 - 32943701 TCCGGCACCAGCCCAGCTGCCTCCAGTCCCGCCGGCACCAGCCCAGCTGCCTCCAGTCCCGCCGGCTCCAGTCCAGTTGCCT a score=14485.0 s hg17.chr17_random 2533747 45 + 2618010 AGCTGCTGCCAGCCAAGCTGCTGCCAG----ATCAGCTCCTGCGGAACT s panTro1.chr19 42802168 38 - 82489036 -------GCCAGCCAAGCTGCTGCCAG----ACCAGCTCCTGCGGAACT s mm5.chr11 22394367 45 - 121648857 AGCTGCTGCCAGCCCAGCTGCTGTCAG----ACCAGCTGCTGTGGAACT s canFam1.chr9 14315034 27 + 53642819 AGCTGCTGCCAGCCCAG----------------------CTGTGGGACT s danRer1.chr2 4850678 49 - 32943701 CGCCGGCACCAGCCCAGCTGCCTCCAGTCCCGCCGGCTCCAGTCCAGTT a score=32018.0 s hg17.chr17_random 2533796 52 + 2618010 GTGGCATTGGTGGTGGCATCAGCTATGGCCAGGAGGGCAGCAGTGGAGCTGT s panTro1.chr19 42802210 52 - 82489036 GTGGCATTGGTGGTGGCATCAGCTATGGCCAGGAGGGCAGCAGTGGAGCTGT s mm5.chr11 22396899 52 - 121648857 ATGGCATTGGGGGTGGAATTGGCTGTGGCCAGGAGGGTGGCTTTGGAGGTGT s rn3.chr10 22182351 52 - 110733352 ATGGCATTGGGGGTGGCATTGGCTATGGCCTAGAGGGTGGCAGTGGAGCCGT s canFam1.chr9 14315065 40 + 53642819 GTGGCATTGGTGG------------TGGCCAGGAGGGTGGCAGTGGAGCTAT a score=148130.0 s hg17.chr17_random 2533848 200 + 2618010 GAGCACCCGTATCAGGTGGTGCCGCCCAGACAGTCGTGTGGAGGGCACCTACCTACCCCCCTGCTGTGTGGTGAGCTGCACGCCCC-----CATCCTG-----CTGCCAACTGCACCATGCCCAGGCC--TCCTG--------CTGCCGCCCGTCCTACTGTGGACAGTCCTGCTGCCGCCCAGTCTG---------------------------------------CTGCTGTGAGCCCACTTGCTGAAAGCCAGTTT s panTro1.chr19 42802262 200 - 82489036 GAGCACCCGTATCAGGTGGTGCCGCCCAGACAGTCGTGTGGAGGGTACCTGCCTGCCCCCCTGCTGTGTGGTGAGCTGCACGCCCC-----CATCCTG-----CTGCCAACTGCACCATGCCCAGGCC--TCCTG--------CTGCCGCCCGTCCTACTGTGGACAGTCCTGCTGCCGCCCAGTCTG---------------------------------------CTGCTGTGAGCCCACTTGCTGAAAGCCAGTTT s mm5.chr11 22396951 207 - 121648857 GAGCTGCCGTGTTAGATGGTGCCGCCCTGACTGCCGCGTGGAGGGCACCTGCCTGCCCCCCTGCTGTGTGGTGAGCTGTATACCCC-----CAACCTG-----CTGCCAGCTGCACCACGCCCAGGCC--TCCTG--------CTGCCGTCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGTTGCTGCTA------------------------------CTGCTGCTAATCCACCTATTAAGAGCTAAT-- s rn3.chr10 22182403 207 - 110733352 GAACTACCGTGTTAGATGGTGCCGCCCTGACTGCCGCGTGGAGGGCACCTCCCTGCCCCCCTGCTGTGTGGTGAGCTGTATACCCC-----CAACCTG-----CTGCCAGCTGCACCATGCCCAGGCC--TCCTG--------CTGCCGTCCATCCTACTGTGGACAGTCCTGCTGCCGTCCAGCCTGCTGCTGCTA------------------------------CTGCTGCTAATCTACCTATTAAGAGCCAGA-- s canFam1.chr9 14315105 239 + 53642819 GAGCTGCCGAGTCAGGTGGTGCCGCCCTGACTGCCGCGTGGAGGACACCTGCCTGCCCCCCTGCTGTGTGGTGAGCTGCACACCCC-----CAACCTG-----CTGCCAGCTGCACCATGCCCAGGCC--TCCTG--------CTGCCGCCCATCCTACTGTGGACAGTCCTGCTGCCGCCCAGCCTGCTGCTCCTACTGCTGCCAGCCCACCTGCTGCCAGCCCACCTGTTGTGAGCCCACCTGCTAAAAGCCAGGTT s danRer1.chr2 4850776 194 - 32943701 GATCCTCCGTG---GGTCATCCCTCCC--GCCCCTCCCTGGTGG-------------CCCTTACCATTTTTTGGGACGGATTCCCCGGCTGCACCCTGGCTTCCTGCCAGGTGCCTGACCCACAGACTCACCCTGATCTGGTCCTCCCATCCCTCCCTTTGT------TCCTGCT-CCGCTCTGCCCCCC-------------------------------------CCTCTGGGAACTTGTCTG---GAAGCCGCTCT a score=293636.0 s hg17.chr17_random 2534048 628 + 2618010 GCTTATTTTCAATTGCCTAGGTCACAGTGTCTCTGAACTGTTCATC-CCTTGACCACCTCTGGACCACTAACAAGTTCTCAGACTT----TGCATTGCTTGTGATGGAGACTACTAAGTATATGAGC-TCACAATTCTATCTGATTCCATTCTACAATGAATACCTTGACCCTTCACTGGGGACACAGAAATGCTACAAAGCCACCTGCTGATCATCAATTTGCTTGGGATATACTATTTCTGATATTTCTGCAGGATTAAAAATTACTGACATGTTGTGGAATTTATCCATGAGAACTATCCACAAGTCTAAT--GTTTCCATGCTTTATAATCTA-TTTTATCT--------TGTTTACCTAAAATTTTTTGCAACATCAAAGACACCAAATTATAGCCAAGTGACATTCCTCAA--GTCACCAGAG-AGAATGGAAGCTCATCACCCAACATTCAGCTTCTAAGAAGTAGGCTGGACT-TTCCACATTTTAACATCTGATCCATCCCTTG--GTTTT----------TGGATCATAATGATCTTGCCTGCTGGATATTTCAGTTATATCTGTGATACAATGTCTTCTGTCATTTCTTAATAAATATTATATACTAGGCAAAGAAACCATTGTCTTTGTTTTCACTTGTACATCACCTG s panTro1.chr19 42802462 628 - 82489036 GCTTATTTTCAATTGCCTAGGTCACAGTGTCTCTGAACTGTTCATC-CCTTGACCACCCCTGGACCACTAACAAGTTCTCAGACTT----TGCATTGCCTGTGATGGAGACTACTAAGTATATGAGC-TCACAATTCTATCTGATTCCATTCTACAATGAATACCTTGACCCTTCACTGGGGACACAGAAATGCTACAAAGCCACCTGCTGATCATCAATTTGCTTGGGATATACTATTTCTGATATTTCTGCAGGATTAAAAATTACTGACATGTTGTGGAATTTATCCATGAGAACTATCCACAAGTCTAAT--GTTTCCATGCTTTATAATCTA-TTTTATCT--------TGTTTACCTAAAATTTTTTGCAACATCAAAGACACCAAATTATAGCCAAGTGACATTCCTCAA--GTCACCAGAG-AGAATGGAAGCTCATCACCCAACATTCAGCTTCTAAGAAGTAGGCTGGACT-TTCCACATTTTAACATCTGATCCATCCCTTG--GTTTT----------TGGATCATAATGATCTTGCCTGCTGGATATTTCAGTTATATCTGTGATACAATGTCTTCTGTCATTTCTTAATAAATATTATATACTAGGCAAAGAAACCATTGTCTTTGTTTTCACTTGTACATCACCTG s mm5.chr11 22397158 622 - 121648857 -----TTTTTGATTGCCCAGATCATGGTATTCTTGAATTGTGCATCTCCTTAACCAACTCTGGAGCAGTAACAAGTTCTCCAACCTTTGCTTCGTTGTCTTTTATGAGGCCT-CAGAGTACAGGCGCATCACAGCCCTGTCCGAGTCTGTTCTATAACCAATACCTTGACCCTCTACAGTGGATCCAGAAATGCTGAGAACCCACAGGCTGACCACCAAATTGTTCTGGATGTATTGCATCTGAAACTCTTGCAGAATTGAAAATTGTCAAAATCTTGAAGAATATTTTCTTTAGAACAATCTGTAATCCTATT--CTTCC--TGCTTGGTGACCAACTTTTATCT------TCTGTTTACTTAAAGCTTTTC-TAACATCAAAGACACCAGCCCACAGCTGAGAGACATTCTTCAGATGTCATCAGAGAAAAATGGAAGTTCCTTAACCAACTTCTGGCTGCTAAGAAATAGGCCAGACCATTCTACACTTTTCCACTGGATCCTTTCCTTATTTTTTT----------TGGATCATAATTCGTTTGCCTGCTGGCCATTCCA-TTATATCTGTAGCATTGTGACTTCTGATGTTTCTTAATAAAGCTTATATCCTGGGCAAATTAACTATGG--TTTGTTTCTACTTG---------TG s rn3.chr10 22182610 630 - 110733352 -----TATCCAACTGCCCAGATCATGGTATTCTTGAACTGTGCATCTCCTTGACCAACCCTGGACCAGTAGCAAGTTCTTCAACCTTTACTTCACTGTCTTTCATGAGGCCT-CAGAGTACAGGTGCATCACAGCACTGTCCCGGTCTGTTCTATAATCAATATCTCAACCCTCTACAGTGGATCCAGAAATGCTCAGAATCCACAGGCTGACCACCAAATTGTTCTGGATATTGTGCATGTGAAACCCTTTCAGGATTGAGAATTGTCAAAATCCTGGAAAATATTTCCTTAAGAATAATCTGCAACCCTATT--CGTCC--TGCTTGGTGACCAACTTTTATCT------TCTGTTTACTTAAAGCTTTTC-TAACATCAAAGACACCAGACTACAGCTGAGAGACACTCTTCAGATATCTTCAGAG-AACATGGAAGTTCTTTACCCAACTTCCAGCCTCTAAGAAACAGGCCAGACCATTCTACTCTTTTCCATTGGATCCTTTCCTTA-CTTCTT----------TTTATCATAGTTAGCCTGCCTGTTGGCCGTTTCCATTATATCTGTAGTGTTGTGTCCTGTGATGTTTCTTAATAAAGCTTATATCCTGGGCAAAGAAACCGTGG--TTTGTTTCTACTTGTGTTTCACCTG s canFam1.chr9 14315344 645 + 53642819 GTCA-TTTCCAATTGCCCAGGACACAATATCTCTGGATAGCAGATCTCCTCAATCACCCTTGGGCCATCAG-AAGTTCTTAGACTTCCATTTAGGTTTAAGTTATGGAGTT--CTAAGTATATGAGT--------TTTATCTGATTTCATCCTGCACTGAATACCTTGGCTATCCACTGTGGTCACAGAAAAGCTGCAAACCTACCAGTTGGTTATCAAAATGCTTTGGATATACTATTTCTGATTTTTCTGTAGGGTTGAAAACTATTAATATTCTGTGGAATTAATCTTTGAGAACTATCCACAAGTCTAATTCTTTTCCCTGCTTTATAATCTTTTTTTTTTTTTTAGTTCTATTTACCTAACATTTTTTCTAACATCAAAGGCACCAGAGTAGAGTCAAGTGACTTTCCTCAGGTGTCATCAGAA-AAAATGGAAGCTCTTCACCCAAAATTCACCTTCTAAGAAGTAGGCTAAACTTTTTCATAATTCAACATCTGATTCCAACCCTT--TTTTTGCAGGGGGTGGGGATCATAATGATCTTGCCTGTTGGCTGTTTCAATTACACCTGTGATACAGTGTTTTCTGTCATTTCTTAATAAATATTATA-ACTGGGCAAATAAACCTTAGTCTGTGTTTCTACTTGTACATAGAATG a score=8373.0 s hg17.chr17_random 2534676 34 + 2618010 GTTTAACTGCTTATAATTCAAGAATGTCTACTTG s panTro1.chr19 42803090 34 - 82489036 GTTTAACTGCTTATAATTCAAGAATGTCTACTTG s mm5.chr11 22397780 34 - 121648857 TTTCATCTGCTTATGGTATTAGAAAATGTACTTA s canFam1.chr9 14315989 33 + 53642819 GGTTAACTG-TGATAATTTGTGAGTGCCTACTTG a score=311.0 s hg17.chr17_random 2534710 2 + 2618010 Ag s panTro1.chr19 42803124 2 - 82489036 Ag s mm5.chr11 22397814 2 - 121648857 AA a score=23392.0 s hg17.chr17_random 2534712 265 + 2618010 gccaagagcagtggttcacacctgtaatcctagcattttgggaggctgaggtgagtggattacctgagctcacgagtttgagaccagcctgggcaacatggtgaaaccctgtctctactaaaaatacaaaaaaaaaaaaaaaaaattagctgggcgtggtagtgcacacctgtagtcccagctacttgggaggctgaggaaggagaatcgcttgaacccaggaggcagaggtttcagtgagctaagatcatgctactgcactcca s panTro1.chr19 42803126 262 - 82489036 gccaggagcagtggttcacacctgtaatcctagcaatttgggaggctgaggtgagcggattacctgagctcacgagtttgagaccagcctgggcaacatggtgaaaccctgtctctactaaaaatac---aaaaacaaaaaaaaattagctgggcgtggtggtgcacacctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggcagaggtttcagtgagctgagatcatgctactgcactcca a score=273.0 s hg17.chr17_random 2534977 1 + 2618010 T s panTro1.chr19 42803388 1 - 82489036 T s mm5.chr11 22399497 1 - 121648857 T a score=62286.0 s hg17.chr17_random 2534978 279 + 2618010 TACACTATGCAATAAACTGCAGCAAGCTCTC-AAAATGGCAATTTCCTATATATGACACCAAAGAAGACATAAAGTGCATTAAAAAGTTAAGTAATGGTAAAAAGACACATATTTCCAAGTCGAAAGCAAATGTGGGAGCTTTTCTTTTATTGAGGATCATTGGCCAT-GTAAGGGTAGGTGG--------ACAACGAAAGGGATGAAGCAAGAT---------GAATTAAGGTATCgaaggatggagacaagaatgaaaagggggagaagagaacaaaa-----tataggagaaaagacaga s panTro1.chr19 42803389 279 - 82489036 TACACTATGCAATAAACTGCAGTAAGCTCTC-AAAATGGCAATTTCCTATATATGACACCAAAGAAGACATAAAGTGCACTAAACAGTTAAGTAATGGTAAAAAGACACATATTTCCAAGTCGAAAGCAAATGTGGGAGCCTTTCTTTTATTGAGGATCATTGGCCAT-GTAAGGGTAGGTGG--------ACAACGAAAGGGATGAAGCAAGAT---------GAATTAAGGTATTAAAGGATGgagacaagaatgaaaagggggagaagagaacaaaa-----tataggagaaaagacaga s mm5.chr11 22399498 271 - 121648857 TACATGGTACAGATGGCTGTAAACAACTCTCAAAAATGGCAGTTTCCTACATACAGTATCTACTG-----------GCCATAAACAGTCAAGTAATGACAAAAGAACACACATTTAAAATCCCAAAGCAGAAGTGGGAATGTTCCTTCAAAGGAGGAATATT-GCCAT-TGGAAGGTTGATGTTTCTCATCCCAAC-CAATGGACGGAAAACGAG---------GTATTAAA----TAAAGGATGGGGA-GAGAATCACAAGATGAAAAAAAGAACAAAATAGTTTATCTGAGCAAAAA---- s canFam1.chr9 14325165 279 + 53642819 TACACTATGCAGTAGACTGCAGTAAGCTCTC-AAAATGGAAACTTCCTATATATGATACCTAAGAGCATTTGAGATGCA-TAAACAGTTCAGTGATAGGAAAAGCACATTAACTGCAAATTCTAAAGCAAGAATGGGGA-GTACTTTTAATTGAGGTTCATTGATGATAATGTGAGTAGATGG--------ATAATAAGAGGGATAGAAGAAAATCAGGGGGGCAGATTAAGG---TAAGAAATGGAGAAAAGAATGAAAAG-----GAAAAGCACAAAA-----CAGAGGAGAAAAGACAGA a score=1878.0 s hg17.chr17_random 2535257 19 + 2618010 gagaagacacagtgaaaaa s panTro1.chr19 42803668 19 - 82489036 gagaagacacagtgaaaaa s mm5.chr11 22399769 6 - 121648857 -------------GGAAAA a score=69854.0 s hg17.chr17_random 2535276 358 + 2618010 ggctaggtatgagaggctgaaagaaaaggaggaagagTGATGGAGAAGACACACCTGAAGGGAAAGGAGGTGAACCAGCGTGGCCTTG-TTAGtaccatatgctgtg-catgtgccaggtacacatcatgcgaactttgcttcacataacatctatactgatcctgtgaaatagatat-tgtgatcctggct----tgtagataag-----taagtctaaaagaagttaaatagcttgcttacagtcacata-gctcataagtttagaaacaaaactgaaatctgaatgcaactct---gtctgactccaaaatttatgGAGAGAATGAAATTAAGAAAATAGATATAAAGAAACGTGTGGGAAAGTTTGTAAG s panTro1.chr19 42803687 358 - 82489036 ggctaggtatgagaggctgaaagaaaaggaggaagagTGATGGAGAAGACACACCTGAAGGGAAAGGAGGTGAACCAGCGTGGCCTTG-TTAGtaccatatgctgtg-catgtgccaggtacacatcatgtgaactttgcttcacataacatctatactgatcctgtgaaatagatat-tgtgatcctggct----tgtagataag-----taagtctaaaagaagttaaatagcttgcttacagtcacata-gctcataagtttagaaacgaaactgaaatctgaatgcaactct---gtctgactccaaaatttatgGAGAGAATGAAATTAAGAAAATAGATATAAAGAAACGTGTGGGAAAGTTTGTAAG s mm5.chr11 22399775 288 - 121648857 G----GGGATGAGAGGCAGAGTTAATA-----AAGAGTCTTGAGAAAGATACCCAGGGAAGGAAAAGATG-GAAACAGCCCGGCCTTG-TACTTAGCAT-------------TG------ATACTTCATGCTAGGCTTATTTTGTGTAACCCTTGTA-TCATCCTACAAAATAGACATGTGTG-CCCTGGCTCATATGTGAATAAG-----TAGATCTAAAAAAGGTAAAATGTCTTGCTT----------------------------------------TCTGAATCCACCTCT---ATCTAACTCCAAACTCCATTAAAAG---GAAACTAAAGAATTGGATGGAGAG---TGTGTGTCAAGGTTCACAAG s canFam1.chr9 14325661 355 + 53642819 GACTAGGGACTAGAGGCAAAAAAGAAAAGGGGAA-AATGACGGGGGAGAGGGGCATGAAGGAGAGAGatgaaaaccaacatgaccttgtttagtgccagacactgtgccatacgctaattatactt--tgcgcacttta--tcatttaacacttacatcaatcct-tgagataaatat-tattatcctggct----tgtagataaggaaaataaatctaaatgaaactaaatagcttgctta-agtcacatattcttttaag--taaacaaaaaactaaaatctgaacccaaaactaaaatctgactccaaaactc----AGAGAATGAAATTAAGGAATTATATTTGAAG-GAGGTATGGGGAGGTTCAGGAG a score=10831.0 s hg17.chr17_random 2535634 55 + 2618010 ATTTAAAGACGGC-----TATTTCAGAGACTGTGGGCTTCAGAATAAGTTACTCtgtgct s panTro1.chr19 42804045 55 - 82489036 ATTTAAAGACGGC-----TATTTCAGAGACTGTGGGCTTCAGAATAAGTTACTCtgtgct s mm5.chr11 22400286 60 - 121648857 ATTTATTGAAAACATTTTTACTTTAGGAATCACGAGTTTTGGTAGAAGTTCCTAGATGCT s canFam1.chr9 14326016 47 + 53642819 ATTTAAGAATGGC-----TGTTT-AGAAGCTGTG-------GAATAAGTTCCTCTTTTCT a score=15607.0 s hg17.chr17_random 2535689 123 + 2618010 gctggttaagttgtggtctcagaactccacatcctccctacgatactcagctttatgatgtt-agtgatga-aatctgcaagccacattgttgcttttccagctctccatattaggccttgctcc s panTro1.chr19 42804100 123 - 82489036 gctggttaagttgtggtctcagaactccacatcctccctacgatactcagctttatgatgtt-agtgatga-aatctgcaagccacattgttgcttttccagctctccatattaggccttgctcc s mm5.chr11 22400346 115 - 121648857 GGTACATAGGCTCTCGTCTTATAGCTTGGCCACTCCCCTTCCATGCTCTGTTTGGGGAGGCTGGGTGGTGGTACTATGCAAACCACATCACTGCT----------TCCATGACAGACTTTGTTCA a score=20381.0 s hg17.chr17_random 2535812 202 + 2618010 agccagccagcaccccatcctcagaattctga-gtcaggtccactgggactatcctccaagttcaga-gccatcag------------aatatgtcaag--aaaa---aatatgactgtcagttctgcaggacccagcctctaaacttacacattttaataactcctaactcttcctt-------gttccttcaaccctaggg---------tcagt------------------agctgcttcctgtagtt-----------gct--------------- s panTro1.chr19 42804223 202 - 82489036 agccagccagcaccccatcctcagaattctga-gtcaggtccactgggactatcctccaagttcaga-gacatcag------------aatatgtcaag--aaaa---aatatgactgtcagttctgcaggacccagcctctaaacgtacacattttaataactcctaactcttcctt-------gttccttcaaccctaggg---------tcagt------------------agctgcttcctatagtt-----------gct--------------- s mm5.chr11 22400461 240 - 121648857 AGCCACCCATCA-CCCATCCT-GGAGCTC------CCGGTCCACTGGAGCCATCCTTCAAGTTCAG--GACATTAG------------AAAACATCAAG--AAGATGCACAATGAGTG-CATCCCTTCAGGACAT-TCCCCTTGATTTGTATATTTTATTGCTCTCTGACTCTTCCCTTCCCATAGCTGCTTCTTCTATAAGAAACTATTCTTCTGTCTTCTTTTCTAACTACTAAGCTACCTCCTATAGCTAACCAATAATGGCT--------------- s canFam1.chr28 23903486 236 + 42450431 agccatgcagtacttcctcttcagagtttggaccccagctctgcaaagtcccttttctatgttcctatgctattagctacagctgcatagtaccccatgctcaag---gatctgagtctcatttctccagggcaacctctccaagttttcagattctggaaattcc--actaattttt-------atacctcagtcctcaggggCACAAT--TCTGT--------------------TAGTGTTCTATTTTT-----------ACCTTTCCATCCTCTAAT a score=-169.0 s hg17.chr17_random 2536014 2 + 2618010 --------ac s panTro1.chr19 42804425 2 - 82489036 --------ac s mm5.chr11 22400701 10 - 121648857 TATATTAAAT a score=34063.0 s hg17.chr17_random 2536016 212 + 2618010 ttccgtgttcaaat---aattggcatggattttgtctcctcactagatgctgactgataGAAAAGTTGTTACCAGGAGTGGCCCTGGAAAGTAGACCTTCATAGATGGG-------------ACTTGGGGATTGCTTTGGTAAAGTCCCTGAGCTTGAACCCAGTGTTAAACTCCTTGCCAATAAAAAATGAAATG---------CATTGCATGCAATAACATCACCATT-ATTACTT s panTro1.chr19 42804427 212 - 82489036 ttccgtgttcaaat---aattggcatggattttgtctcctcactagatgctgactgataGAAAAGTTGTTACCAGGAGTGGCCCTGGAAAGTAGACCTTCATAGATGGG-------------ACTTGGGGATTGCTTTGGTAAAGTCCCTGAGCTTGAACCCAGTGTTAAACTCCTTGCCAATAAAAAATGAAATG---------CGTTGCATGCAACAACATCACCATT-ATTACTT s mm5.chr11 22400711 218 - 121648857 TATCAAGGTCAAGGGTAAACTGGCACTTCTTCC-CCTCCTTATTAGGTATTTGCTAACACAAAAGTTGGTATCAAGAGTGATTCCAGAAAAAGGAAAAAAAAAAAAAAGAAGCAACAATCCTATTTTGTGGCTACTTTAACAGAATCCCTAAACTTGTACTTTGTGTTAAATTTCTTGTTGATAGGAAATGAA------------------ATAGAATCATACCACAATT-TTTACTT s canFam1.chr27 47751519 214 + 49087461 tttcctgttcaaat---tactggtgtggggtctgtctcctgattggaccctgac-----atCAAATTGATATTGGAA--GGTCTGGGGAGACAGACACTCAGAGATAGG-------------ATTTGAGAATGAGTTTGGTCAGGTGTTTGCATCAAAGGGCAGTGCTGAGTTCCTTGTCAGTGGAAAATCAGATGCTAGTCATCCATGATAAGGAGTGGCATTCCAGTTAATTAAA- a score=90504.0 s hg17.chr17_random 2536228 707 + 2618010 TTGTTGTTTA-aataaagcacctattgaaataagtggcttgggggctcaagttgctgctgctcttgactattaagacagtcatgatgattataagcattgttgtggaggatg---tcttctgagtgtactgtgtgctttcagaaagaaaaatggcaaattcaagaccttaatatctcaggtcaggtcataatcagagatacagaaaagattcagcagcagccctaaaataataacttgtttgttatagccacaggactgatactgccccatattaaacactaactaaatttaattgtgtgagttgcataattgaaagttaagctgaattcacagcttcaacaagactgtcatgtgaaagttagggaattgataaagaagaagttttagaattgaaacctggcataaggatttctgtctgaactcaaaggggactgaagatcttgaatctccaagtcattctgagcctcctctaccagtaaaaatagatttccctcctgagtctgatga-gaacagctgtccactgctggaaaatcctctaataacctcacttggg--aaatgtacttatatggaatgcctattgtgctgaatagccaccataactataaatttttcctactagtcctgtatttctgatcacatttcag-atgctccatagg-gcaaatacaatgtatgatccagga-aaaatagctcatacatgaaaaaacatgca--a s panTro1.chr19 42804639 709 - 82489036 TGGTTGTTTA-AATAAAGCACCTATTGAAATAAGTGGCTTGGGGGCGCAAGTTGCTGCTGCTCTTGACTATTAAGACAGTCATGATGATTATAAGCATTGTTGTTGAGGATG---TCTTCTGAGTGTACCGTGTGCTTTCAGAAAGAAAAATGGCAAATTCAAGACCTTAATATCTCAGGTCAGGTCATAATCAGAGATCCAGAAAAGATTCAGCAGCAGCCCTAAAATAATCACTTGTTTGTTATAGCCACAGGACTGATACTGCCCCATATTAAACACTAACTAAATTTAATTGTGTGAGTTGCATAATTGAAAGTTAAGCTGAATTCACAGCTTCAACAAGACTGTCACGTGAAAGTTAGGGAATTGATAAGGAAGAAGTTTTAGAATTGAAACCTGGCATAAGGATTTCTGTCTGAACTCAAAGGGGACTGAGGATCTTGAATCTCCAAGTCATTCTGAGCCTCCTTTACCAGTAAAAATAGATTTCCCTCCTGAGTCTGATGA-GAACAGCTGTCCACTGCTGGAAAATCCTCTAATAACCTCACTTGGG--AAATGTACTTATATGGAATGCCTATTGTGCTGAATAGCCACCATAACTATAACTTTTTCCTACTAGTCCTGTATTTCTGATCACATTTCAG-ATGCTCCACAGG-GCAAATATGATGTATGATCCAGGA-AAAATAGCTCATACATGAAAAAACATGCAATA s canFam1.chr27 47751733 637 + 49087461 TTATCACTTGTGATGAAGTGTTAATTATAGCAAATGCCCTGGGAGCCCAAGAGGCTGCTGCACTT-ATTGTTATGGCAGTAGTAATG---ACAAGGACTGTGGTGTGGAACTGACTTTCCTGAGTATACTGTTT-------AAAAAAAAAAAAACAAGCTTAGGA--------------------TCATAATCTGAGAATCAG-AGAGCTTCCATGGCAGCCCTGATATAATATTTTATTTCTTGTAACCA--------ATATTG----------------AATCAAATTTAACTGTTCAAGtggctgaattacaacagcagttgaatttgcagcctttacaactttcttatgtgaaaattagaactctgagaaacaatgagacc-----ttgaaatttggaatgaggaaatctggtaggattcaa-----gttgagattctaaaatctccaagtcactctgagcatttctttgcaatagaagcagatc---------agtactacaatgactagccttcctttgctagaaaactct----ggagctcatctggggcagatgtcttgacaagg-atgcttattctcctcaagatgcactatcatcacctcttgttgttactagactcacaacttgggtcaaatctcagcatgtttcagggactcagacacatagtatgacccaggaggaaatggcttatactttaaatgagttaca--a a score=81573.0 s hg17.chr17_random 2536935 908 + 2618010 taggccaaaatccagaatactgacaacaccaaatgctgacaagaatatggagcaacaggagttctcattcattgctggtgggaatggaaaatggtacagccactttggaagacagtttgatgttttcttacaaaactaaacatattcttaccatacaatctggcaagcatacaacttggtatataccttaaaaagttgaaaacatatgtccactcaaaaacctgcatatggatgtttaaagtagctttatacataattgcccaaacttgaaaacaatcaagatgcccttcagtaggagaatggataaactgtggtacatccagacaatgaaatactatttagtactgaaaagaaatgagttatcaagtcatgaaaagacatagatgagatttaaatgcatatgactaaatgaaagaagccatttgaaaaggctaaatactgtatgactccaagtatatgacattctgaaaaaagtaaaactatggagactaaaaaaatgagtggttgccaggggtt-ggggtaaaaggggtggaataggaacaacaaaaaaaggattttagcgcagtggaactattctgtatgatactataaggtgggtacaaattatgtatttatccaaacccataaaatgaacaacaacaaaagtgaacccaaatgaaaactatggactctgggtgattatgtgtcaatgtagatttatcagttgtaaaaaatgtatcactctagtgggggatgctgataatgggggaagctacacatgtgtgaaaaca--gggtatataggaaacctgtgtgctcgattttgctgtgaactcaaaactactctggaaataaagtgtatttttaaaaaacattattgtattattatatattagcagaaacctgaggaatatgtgtaagtgtattttt-gg s panTro1.chr19 42805348 911 - 82489036 TAggccaaaatccagaatgctgacaacaccaaatgctgacaagaatatggagcaacaggagctctcattcattgctggtgggaatggaaaatggtacagccactttggaagacagtttgatgttttcttacaaaactaaacatattcttaccatacaatccagcaagcatacaacttggtatataccttaaaaagttgaaaacatatgtccactcaaaaacctgcatatggatgtttaaagtagctttattcataattgcccaaacttgaaaacaatcaagatgcccttcagtgggagaatggataaactgtggtacatccagacaatgaaatactatttagtgctgaaaagaaatgagttatcaagtcatgaaaagacatagatgagatttaaatgcatatgactaaatgaaagaagccatttgaaaaggctaaatactgtatgactccaagtatatgacattctgaaaaaagtaaaactatggagactaaaaaaatgagtggttgccaggggttaggggtaaaaggggtggactaggaacaac-aaaaaaggattttagcgcagtgaaactattctgtatgatactataaggtgggtacaaattatgtatttatgcaaacccataaaatgaacaacaacaaaagtgaacccaaatgaaaactatggactctgggtgattatgtgtcaatgtagatttatcaattgtaaaaaatgtatcactctagtgggggatgttgataatgggggaagctacacatgtgtgaaaacagggggtatataggaaacctgtgtgctcgattttgctgtgaactcaaaactactctggaaataaagtgtatttttaaaaaGCATTATTGTATTATTATATATTAGCAGAAACCTGAAGAATATGTGTAAGTGTATTTTTGGG a score=52970.0 s hg17.chr17_random 2537843 482 + 2618010 ggtagtaaaccaaagaagatggaatatgacactcttatagtctcacttggggaagttgcttatatggaatgcctaaatgacgtggttacacttaaagattctggatgtaaattttttgtacaaagaattatttga------tttgtttgttt-----aaacttgaaatcaaccatggcctatgtttactgatgctcagatgtcaggacttttttgacataacataaaggaaaggaatcaaagacttaaggagataggaattttggagaagatttatcatgttacactgcacacat----acgcagcaccaagtaacttcccaa---------------aagtcccagagaaaactgccttcactcaaggattttata-----ttcatgggggACTCTTGCAGTAGCCTAGATATGATGGTGGAGATACTCCC------TCTCCTTGATTTCAGTAGAGATAATAGGATCTCAGAGCACTGGAAGCTAAGTCACAAAACTTGACTACCAAAGTAAAAGTAAGTG s panTro1.chr19 42806259 482 - 82489036 GGTAGTAAACCAAAGAAGATGGAATATGACACTCTAATAATCTCACTTGGGGAAGTTGCTTATAAGGAATGCCTAAATGATGTGATTACACTTAAAGATTCTGGATGTAAATTTTTTGTACAAAGAATTATTTGA------TTTGTTGGTTT-----AAACTTGAAATCAACCATGGCCTATGTTTACTGATGCTCAGATGTCAGGACTTTTTTGACATAACATAAAGGAAAGGAATCAAAGACTTAAGGAGATAGGAATTTTGGAGAAGATTTATCATGTTACACTGCACACAT----ACACATCACCAAGTAACTTCCCAA---------------AAGTCCCAGAGAAAACTGCCTTTACTCAAGGCTTTTATA-----TTCATGGGGGACTCTTGCAGTAGCCTAGATATGATGGTGGAGATACTCCC------TCTCTTTGATTTCAGTAGAGATAATAGGATCTCAGAGCACTGGAAGCTAAGTCACAAAACTTGACTACCAAAGTAAAAGTAAGTG s canFam1.chr2 74499327 482 + 87725193 ggtggggAGTCAAGAAggaaagaatataatagttgatcagtgtgatt--------ttattgatatgaatgcccttactagagcttctagacttaacg--------tgttaactctcacagctgaaagtaacttgaatattgcttgttgaattgacggaaacCGGTGTTCAA-CATGACCCGTATACACTGAGGTTGAGATGTCAGCATTTCTCTG------------GTTAATGTCTCTCCTGTCCAAGAAGACAGGAGTATTGG---AGATTTATCACATGAGACTGCATCTATTCCCTCATCCCATTGAGGACATCCCCCACCTTGCTGTTGAGATAAGCACAAGTGAGA---------ACACCAGGATCCTTGAGAAATTTTATGGTGGATGTCCTCTGCAGTTTGGGTATACCGGGAGAGGCAGTGCTGAGGTGGCTCCCTGATTTCATTAGGGGTGATGGGTTCCTGAAGGAGTAGAGGGCAAGCGGCAGGGCTGAGCTGCCAGCGTCAAGGTAGATG a score=20435.0 s hg17.chr17_random 2538325 227 + 2618010 CAGTTGGCCTgtttgaattacatgggtccacttacacgcaga-tttttttcaaccaaacactgattgaaatacagtattctcaagatgcaaaacttgcatatatggagggccaacttttcataaacactccacagggctgagcgtgagacttgaatatgtgcagattttgtatatgcaggaggcctggaaccaatcccccccacccagtacactgagagacaactgTA s panTro1.chr19 42806741 228 - 82489036 CAGTTGGCCTgtttgaattgcatgggtccacttacacgcagattttttttcaaccaaacactgattgaaatacagtattctcaagatgcaaaacttgcatatatggagggccaacttttcataaacactccacagggctgagtgtgagactggaatatgtgcagattttgtatatgcaggaggcctggaaccaatcccccccacccagtacactgagagagaactgTA a score=16743.0 s hg17.chr17_random 2538552 121 + 2618010 CATTCactgtaaagagaaacagagatatagtggtagccagaatgctttgacccacagggatctgtcagtagatagtttattatggtatccttggaatgaaattaaggggaagcctattaaa s panTro1.chr19 42806969 121 - 82489036 Cattcactgtaaagagaaacagagatatagtggtagccagaatgctttgacccacagggatctgtcagtagttagtttattatggtatccttggaatgaaattaaggggaagcctattaaa s canFam1.chr2 74499809 99 + 87725193 CTTTCTCTGCA-----------GGATGAAGTGATCACCAGGATGTTTTCACTTGCAGGGACCTTTGATCAGA-----------GTTGCCCTAGGAATGAAATAGATGAGCAGCTTATTAGA a score=59352.0 s hg17.chr17_random 2538673 653 + 2618010 atgttggttgatatctatactcagaTATTCAGGGGATtgtattagtttccaaatgctcctctaacaaattaccataaaattggcaacctaaaacaacacaaatgtattatctcacagattttgtgggtcaggagtacagcagggcatggtgagattctttgctcttggtcttacaggaataaaaccaaagtatcagctggtcctcatctgaggctcagtcttcttccaggaattgttttgttggcaggattcatttctttCTCATGttttcatatagtcccctccatcttcaaaccagcagtggtaggtcaagttcatgttatactttgaatctctgatttcctaccctacccccacttccctctccaatatcctcttctgctgtcagctgggaaaaaaatgttccgcttttaacggcacatataattacactggacacacctggataattcaggctattgtcactatcttgaagtccactgattagtaaccttaattacatttgaaatg--------------tcccttttgttatgtagcAGACATGCTACATAACATCCCCAAGTCCCATCTATGAAGGTCTACTTTCCAGGACCACTCCTGGTAACAACTTTTCtatcagtcagcatctagtgaggagacaaaatccatgccaattatttgaa s panTro1.chr19 42807090 667 - 82489036 atgttggttgatatctatactcagaTGTTCAGGGGATtgtattagtttccaaatgctcctctaacaaattaccataaaattggcaacctaaaacaacacaaatgtattatctcacagattttgtgggtcaggagtacagcagggcatggtgagattctttgctcttagtcttataggaataaaaccaaagtatcagctggttctcatctgaggctcagtcttcttccaggaattgttttgttggcaggattcatttctttctcatgttttcatatagtcccctccatcttcaaaccagcagtggtaggtcaagttcatgttatactttgaatctctgatttcctaccctaccccaacttccctctccaatgtcctcttctgctctcagctgggaaaaaaatgttctgcttttaacagcacatataattacattggacacacctggataattcaggctattgtcactatcttgaagtccactgattagtaaccttaattacatttgaaatgtcccttttgttatatCCCTTTTGTTATGTAGCAGACATGCTACATAACATCCCCAAGTCCCATCTATGAAGGTCTACTTTCCAGGACCACTCCTGGTAACAACTTTTCtatcagtcagcatctagtgaggagacaaaatccgtgccaattatttgaa a score=11020.0 s hg17.chr17_random 2539326 49 + 2618010 caTGGAAGTAGCAACTACAGGAAGCAGCTACTGACCCTAGGGTTGAAGG s panTro1.chr19 42807757 49 - 82489036 catggaagtagcaactacaggaagcagctactgaccctagggttgaagg s rn3.chr5 58412640 49 - 173106704 CAGAGAAGTAGCAACTGCCGGAAGGAGCCACTGACCTTGAGGTTGAGGG a score=214571.0 s hg17.chr17_random 2539375 2334 + 2618010 TACATGACCTTGGGTCATGACACAAGGGCTCAGAGGCCTTGGAGGCTGAAATTCTGCCAATCACaggaactattagacactaagttgacactaatttctagagacccaaatgccactggtcctccaaaaaaaagtggtgacttttggtggccagatgatagttagaatcttggtctacgtttgaatcacagtggacccagtgggcctgcaggacaattccccaatttgtgaatgtataattggaataatcatgtttgacaactggcagaatccccacattggcactgaggaataaagctcatttggtaaaaaagggccaagttgaagcccccagaagtttccttgatacaagaatagtaaataaaaaataatactatattgatgggaaaattttgaagatgggtgccattatcagagacttggaaaaagctgggttgtgatacctaccatctccccattgagcttgtttatcccgtagacaaagcagataaaccctggagtataacagaacaattatgtattattattttaaatgaattcaggtgatgacctcaactggagatgatgtcccaaatgttgtatcttgaatggagcaaattaagacagcccctggcacctggtatgcagctattgacaagaaaatgcatttttctctgtatcagggcagccagaagtacttttctttgacctggcatggccaacagtaaccttccaagcattgcctcagggctatgtcaactatcctgctctctgtcctaatatactcatgctattaatcatcttgactttccatacaacatcataacagtccactacatcaatgacatcttgctggtgacatttgatgagcaggaagtaacaagtaccttagaggacttggtaaaacattaatgaactccagggcaagaaacaaactctacaaaaattaaaaagctcacagcctcaatgaagtttcttgaagtcaaattgtctggaacacactgacatatcctttccaaggtgaaagaaaaactgctgtattttaagctaacttcagctaaaaaggcacaactcttggtgggcatttttgtattttggggtcaacatatgccatatttgagtgtgttatttcaacccacttaatgaataactcaaaatgctgctaggttttagggcaagagcaagagaaggctctaaagaaaagtcccagctATgggcgtggtggcacgcacctgtaatcccagctacttgagaggctgaggcaggagaattgcttgaacctgggagacagagcttgcagtgagcccggatcacgccactgcactccagcctgggtgacagagcaagactccataaaaaaaaaaaaaaaaaaaaaagaagaaGAAGAAAGAAAGAAaagtcccagctataattcaagctgctatttcatttgagccttataatccagcacatccaaccatatttgaagtgtctatggaaaacacacgctcaccgtatatagcctctggcaagcatcaatagaagaattacaggtcagacttataaggttttggagaaaatccatgccctcctctgaaaataactactgtccttttgataaactacttccggcttgctagtgggcaagaactggaaaaaatggaatgactgtgcaacctgagcttctcatgcttagctgggtgttatctacccaccaaactataaggctggatgtgcacaggagcaatctattaAGGcaggggcccccaacccctgggcagtggaccggtaccagttgtggcctattaggaaccaggcagcacagcaggaggtgagccactggccagaagcattactgcttgagctctgtctcctgtcagatcagctgtggcattagattctcatagaagcgcaaaccctattgtgaaccgcgcatgtgatggatctaggttgtgggctccttatgagactctaatgcctgatgatctgtcactatctcctatcactcgcaggtgggaccatctagttgcaggaaaacaagctcagggctcccattgattctacattatggtgagttgtataattattacattatatattacactataataataatagaaataaggtgcacaataaatgtaatgcccttgaatcatcctgaaccatcctacccacctccctggtccatggaaaaattgtcttccatgaagccagtccctcgtgccaaaaaggttgggggctactgccgtatgttataccccaagctaagtaagcttcatattaacctaatttcattgaatacttacatcaatcctgtaaaatagatactgttaccttacctttgtagatgaggaaatcaaacctaaaggcggttca s panTro1.chr19 42807806 2328 - 82489036 tacaTGAACTTGGGTCATGACACAAGGGCTCAGAGGCCTTGGAGGCTGAAATTCTGCCAATCACAGGAACTATTAGACActaagttaacactaatttctagagaaccaaatgccactggtcctccaaaaaaaagtggtgacttttggtggtcagatgatagttagaatcttggtctatgtttgaatcacagtggacccagtgggcctgcagaacaattccccaatttgtgaatgtataattggaataatcatgcctgacaactggcagaatccccacattggcactgaggaataaagctcatttggtaaaaaagggccaagttgaagcccccagaagtttccttgatacaagaatagtaaataaaaaataatactatattgatgggaaaattttgaacatgggtgccattatcagagacttggaaaaagctgggttgtgatacctaccatctccccattgagcttgtttatcccgtggacaaagcagataaaccctggagtataacagaacagttatgtattattattttaaatgaattcaggtgatgacctcaactggagatgatgtcccaaatgttgtatcttgaatggagcaaattaagacagcccctggcacctggtatgcagctattgacaagaaaatgcatttttctctgtatcagggcagccagaagtacatttctttgacctggcatggccaacagtaaccttccaagcattgcctcagggctatgtcaactatcctgctctctgtcctaatacactcatgctattaatcatcttgactttccatacaacatcataacagtccactacatcaatgacatcttgctggttacatttgacgagcaggaagtaacaagtaccttagaggacttggtaaaacattaatgaactccagggcaagaaacaaactctacaaaaattaaaaagctcacagcctcagtgaagtttcttgaagtccaattgtctggaacacactgacatatcctttccaaggtgaaagaaaaactgctgtatattaagctaacttcagctaaaaaggcacaactcttggtgggcatttttgtattttggggtcaacatatgccatatttgagtgtgttatttcaacccacttaatgaataactcaaaatgctgctgggttttagggcaagagcaagagaaggctctaaagaaaagtcccagctATgggcgtggtggcacgcacctgtaatcccagctacttgagaggctgaggcaggagaattgcttgaacctgggagacagagcttgcagcgagcccggatcacgccactgcactccagcctgggtgacagagcaagactccattaaaaaaaaaaaaaaaaaaa------aagaagaaagaaAGAAaagtcccagctacaattcaagctgctatttcgtttgagccttataatccagcacatccaaccatatttgaagtgtctatggaaaacacatgctcactgtatatagcctctggcaagcatcaatagaagaattacaggtcagacttataaggttttggagaaaatccatgccctcctctgaaaataactactgtccttttgataaactacttccagcttgctagtgggcaagaactggaaaaaatggaatgactatgcaacctgagcttctcatgcttagctgggtgttatctacccaccaaactataaggctggatgtgcacaggagcaatctattaAGGcaggggcccccaacccctgggcagtggaccggtaccagttgtggcctattaggaaccaggcagcacagcaggaggtgagccaccggccagaagcattactgcttgagctctgtctcctgtcagatcagctgtggcattagattctcatagaagcgcaaaccctattgtgaaccgcgcatgtgagggatctaggttgtgggctccttatgagactctaatgcctgatgatctgtcactatctcctatcacttgcagatgggaccatctagttgcaggaaaacaagctcagggctcccattgattctacattatggtgagttgtataattatttcattatatattacactataataataatagaaataaggtgcacaataaatgtaatgcccttgaatcatcctgaaccatcctacccacctccctggtccatggaaaaattgccttccatgaagccagtccctcatgccaaaaaggttgggggctactgccgtatgctataccccaagctaagtaagcttcatattaacctaatttcattgaatacttacatcaattctgtaaaatagatactgttaccttacctttgtagatgaggaaatcaaacctaaaggcagttca a score=14228.0 s hg17.chr17_random 2541709 76 + 2618010 atagtttattcataagtaaaaaacagaaatacaaacccaactctgaccccaaaattcatgATGAGACCATGAAGTT s panTro1.chr19 42810134 76 - 82489036 atagtttattcataagtaaaaaacagaaatacaaacccaactctgaccccaaaattcatgATGAGACCATGAAGTT s canFam1.chr9 14329096 71 + 53642819 ATAGCTTATACGT-----AAAAACCAAAATATGAACCCAACTCAGGCTCCAAAACTCAGAACAAGACAATGAAATT a score=91.0 s hg17.chr17_random 2541785 1 + 2618010 A s canFam1.chr9 14329167 1 + 53642819 A a score=273.0 s hg17.chr17_random 2541785 1 + 2618010 A s panTro1.chr19 42810210 1 - 82489036 A s mm5.chr11 22403246 1 - 121648857 A a score=10482.0 s hg17.chr17_random 2541786 24 + 2618010 AGGAATTGGAAGTAAAGATTGGTG s panTro1.chr19 42810211 24 - 82489036 AGGAATTGGGAGTAAAGATTGGTG s mm5.chr11 22403247 21 - 121648857 AGAAACTAGAAGTCAA---TGATG s rn3.chr10 22189264 24 - 110733352 AGAAACTCTAAGTAAATGACGTTG s canFam1.chr9 14329168 24 + 53642819 AGGAACTGGAAATAAAGAATGGTG a score=574.0 s hg17.chr17_random 2541810 5 + 2618010 TTGGG s panTro1.chr19 42810235 5 - 82489036 TTGTG s mm5.chr11 22403268 5 - 121648857 TGTGG s rn3.chr10 22189288 5 - 110733352 TGTGG a score=235433.0 s hg17.chr17_random 2541815 891 + 2618010 AGATTCAGTAGATCCAAGGATATCTCCTTGGGCAGCTGTGGGC-TTCAGAATAAGTTCCTCT-TTGTGCCC---ATTATGTTCCTATTTCTCGGCTTCAAGGCCTCCCTTCTG-----------------Tactctgcaaaacacactgtg----------------------------------gctttgaccgcagttctgttaggcttttctactagggggtgacagaggaaaactgcaaagctggaataggaaggcaggatttgttccttcc-----------ttctgctccatttgggacttcctgtatgctaagcagatcccaggataatcgccccaagtcacacttctcactccagcaggtgcagatcctgcccatggcagcacacgaattcagtttgcagttttctcaacacttgaagaaccagcttcattgtctccttt---ccagggtcaccag---gaccaaccagtcctctcttaaaacaac-agtttcagcgctacaggacatctccCTCTCTAA-------GGT-TTAATTCCTTGCCTCCTGCATTTAAAGCTAGGCCTTTAAAGCTTCCCTGGAAAACTAGGGCTTTCTGCAGTTTCCACATTTGTGGTATTTTAGGGTCCTCTT------TTTTT----ACCTAGTGAACAGC----TTAAAAATTATTCTTATGAATTTTATTCAATAGAAAAAGAAAGGGTTTGGTTCTCATCTTCTGCGGGACCC-TAACTGTTATACTCTTACTGCCTTTGAAAAA--TTAGATTATTTAGTGAGCCATTTGTACAGAATGTTCACTTACTCCCTTTCATTAATCACCATAGTGGATTATGAGAAAAAAATTA-TATCTGAG------CTTTGGAGATGGCAGTCAGAGAATTACAGCATTTTAGACCTGTT-AGAATCCAATTGAGAAACTAGAAAGATTACTCAACAACATTAAGCTCTGTAGTTAAGAAAGTTCCACCTTTTCT s panTro1.chr19 42810240 885 - 82489036 AGATTCAGTGGATCCAAGGATATCTCCTTGGGCAGCTGTGGGC-TTCAGAATAAGTTCCTCT-TTGTGCCC---ATTACGTTCCTATTTCTCGGCTTCAAGGCCTCCCTTCTG-----------------Tactctgcaaaacacactgtg----------------------------------gctttaaccgcagttctgttaggcttttccactagggggtgacagaggaaaactgcaaagctggaataggaaggcaggatttgttccttcc-----------ttctgctccatttggggcttcctgtatgctaagcagatcccaggataatcgccccaagtcacacttctcactctagcaggtgcagatcctgcccatggcagcacacgaattcagtttgcagttttctcaacacttgaagaaccagcttcattgtctccttt---ccagggtcaccag---gaccaatcagtcctctcttaaaacaac-agtttcagctctacaggacatctccctctctaa-------gGT-TTAATTCCTTGCCTCTTGCATTTAAAGCTAGGCCTTTAAAGCTTCCCTGGAAAACTAGGGCTTTCTGCAGTTTCCACATTTGTGGTATTTTAGGGTCCTCTT------TTTTT----ACCTAGTGAACAGC----TTAAAAATTATTTGTATGAATTTTATTCAATAGAAAAAGAAAGGGTTTTGTTCTCATCTTCTGTGGGACCC-TAACTGTT------TTACTGCCTTTGAAAAA--TTAGATTATTTAGTGAGCCATTTGTACAGAATGTTCTCTTACTCCCTTTCATTAATCACCATAGTGGATTATGAGAAAAAAATTA-TATCTGAG------CTTTGGAGATGGCAGTCAGAGAATTACAGCATTTTAGACCTGTT-AGAATCCAATTGAGAAACTAGAAAGATTACTCAACAACATTAAGCTCCGTAGTTAAGAAAGTTCCACCTTTTCT s mm5.chr11 22403273 865 - 121648857 AGATTCAGGATATCTAAGGAT---------GACTGTCTTGAAT-TTC----TCAGCTCCTCCATTCTGACC-----TCTGTGGCAATCTCTGAG-----ATGCCTGTAGT-GG-----------------TACTCAGTAAACCTCTTTGTT----------------------------------GCTCTGCCAGTGGCTGTGCTAGACTTGACCACTAGGGGGCAAGAGAGGAAAACCGCGCCGTCTGCAGAGTAGGGT----CCTGTCCCTTCC------------TCTTTACTGTTTTCTGCTTACTCCTTTGTCAGCTGGTGCCAGCGTTATCACCTCAGATTCGCTGCCTCGATCCAGCAGGCACGCATCCTTGCCCTGGCAGTACCTGGGTTCCATTTGTAGTTCTCTCCACTC-TATAGAACTAACTCCACTG-CTCTTTTCAGCCCATGACACGAGCTAAGCCTGCCACACCTTTCCCAAAATG---CGTTTCA-CTCTTCAGGGTAACATCCTCTCTAA----CTCTGT-ATGTTTTCTTTTTCCTTCTTTCT---------TTTTTCCTTCTTTCTTTTAAAATGCACATGTTCTGCATTTACTAAACTTATGATGTCGTAGGAGTTTCTTTAAACCTTTTTAATCACCTAACCAACAACTTAGTTAAAAATTGTTTT----AAATTAATTCAAT--GCAAATCATGTGTGTAGTTCATGTCTCCTGACTAAGCC----CTGTTACAT--TTGCCTCCTTTAAAAAAATTAAAATTATTTAGTGAACTATTCACTCAGACT-TACACTCACTCCTTTTGGTTGCTCGTCAGAGCTGATTGTGGGGAACATGGAA-CATATTAGTCTCTACTTTAGAGAAAACACCTAGGGAATCACA----TTCGGGCAATAC-TGAATCTAGTTTAGACACTAGAAAGATTGC-CAGCCCCACTGAACGTGGTAGCTAAGAAATCTCC-CCATTTCT s rn3.chr10 22189293 869 - 110733352 AGATTCAGAACGCCTAAGGATGACTGTCTTGGCTTGTGTAGAT-TTCAACGTGCACTGATCC-GTCTGCCTGTTGTTAAATTGC-ATTTTTCACCTCCTCCATCCTCCCTCTG-----------------ACCTCTGTAGCAATCTCTGTGATCCCTGTGGTGGCGCCCAGCAAATCTCTTCTTTGCTCTGCCAGTGGCTCTGCTAGACTTGACCACTAGGGGGCAAGAGAGGAAAACTGCGTCGTCTGCAGAGCAGGGT----CCTGGCCCTTTC------------TCCTTTCTGTTTTCTGCTCC---TATGCCCAGCGGGTGCCAGGATCGCTGC--------------CTCACTCCAGCAGGCGTGCATCCTTGCCCTGATGGTGCCTTGGTTCTATTTGTAGTTCTCTGCACTCTCTTAGAACTAACCCCATTG-CTCTTCTCCGCCCATCACACGAGCT-AGCCAGCCACACCTTTCCAAAAAGTG--GGTTTTA-CTCCTCAGGGTAACACCCTCTCTAA----CTCTGT-GTGCTTTCCT-TTTCTTTCATTT---------TTTCCCCTTCTTTCCTTCAAAATGCACACATTCTGCATTTACTAAATTTATGATGTCGTAGGGGTTTCTTTAAACCCTTTTAATCACGTAGCCAACAACTGGGTTAAAAATTGATTT----AAATTAATTCAGC--ACAAATAGTGTGTTTAGTTCGTGTCTCCTGATTAACCC----CTCTTCTAT--TTGCCTCCTTTAAAATT--TTAAAATATTTAGTGAACTGTTTGCTCGGAGT-TTCACTCACTCTTTTTGGTTGCTTGTCAGGGCTGATTGCGGGGAACATATTAGTCTCTGTA------CTTTAGAGCAAACACCCAGAGAATCACA----TTCCGGCCACAC-TGAATCTACTTTAGACACAAG-AAGATCGCCCAGCACCACTGAAC----------------------------- s canFam1.chr9 14329425 889 + 53642819 GGGTTCAACTGATTTAAAGATGTCTATTTGGGAAGCTGTGGGCTTTCAGAGTAAGCTCCTCT---GTGCCA--GGTGTTGTTCCTGTCTCC---CTTCATACCCTCCCTGCTGTTCAGTTGGGTTAGTGATGCTCTGCAAACCActctgtc----------------------------------g--------------------ggattcaccactagggagtgacagaggaaaactgcaaagct-gaagaggaagaaggctcctgctccttcctttttgtttccttctgcttca-ttgggactttttgtatgct-ggcaattcccaggattacctc--ctagtaacactgtttgctccagcagctgcagagcccatccagagaagcatctaaacccagcctgcagttttctcaacacgtgtagaacctgcttcattg-cacaccccactcagagtcaccagcc-aaccagt------tttcctgaaacatctgagttcagctctacaggataaccccctccctaaatttctaagtgttaattccctcccacttccctcagaaaaaaaaagtatca---tttcc--------aagggtttgctacagctcctacatctgtaacatctcagtatccccttctaaccctttt----agttatctaacaacttagtttaaaattctccatataaaattcacttgat--tcaaataatgggtgtgattcttgtttcctgaaggaacccttactgttataCTCTTGTTGCCTTTAAAAAT--TCAGATTATTTACTGAACCATTTGTTCAGACT----TCCCACTTACTTTGATTAATCTTGGAAACTGACT--GAAAAAAAAATTAGTCTCTGAG------CTTTGGAAGTGGCAACCAGAGAATTACA---TTATAGGTCTGACAAGAATCTGATTGAAGAACTGGAAAGATTACTTGGCACCACTTAGCTCTGCAGTTAAGAAAGCTCTACCATTTCT a score=126788.0 s hg17.chr17_random 2542706 322 + 2618010 ATCAAAGGCCTTCCATGAAAAGTGGGATGTGCCCAG-AGACCTGACTGCAGACGGCCCTTTGTTAA----TGACTGACTTATCCCCAGAATCATAACTCTGACTTAAGAAACCTATTCTCCATCATGATTATTCTGTTAAGTGCGATTAGAC-AGAATTAGTTTTAAAAGCTCAAAGACACAAAGGGATGTTGAGAAACT-TGAAGGGAGAAAATGTTGAATCATCACATCAACTAAAGCATGAAAGCCTTGGGTAAGACCGGAGATTTGAGAGTTTAGTAAAATTGTTT-TGTGAGGTTGAGAGAGACTAATCCAAAGCACCAACTATT s panTro1.chr19 42811125 322 - 82489036 ATCAAAAGCCTTCCATGAAAAGTGGGATGTGCCCAG-AGACCTGACTGCAGACGGCCTTTTGTTAA----TGACTGACTTATCCCCAAAATCATAACTCTGACTTAAGAAACCTATTCTCCATCATGATTATTCTGTTAAATACGATTAGAC-AGAATTAGTTTTAAAAGCTCAAAGACACAAAGGGATGTTGAGAAACT-TGAAGGGAGAAAATGTTGAATCATCACATCAACTAAAGCATGAAAGCCTTGGGTAAGACTGGAGATTTGAGAGTTTAGTAAAATTGTTT-TGTGAGGTTGAGAGAGACTAATCCAAAGCACCAAGTATT s mm5.chr11 22404138 299 - 121648857 ATAGAAACTTTCTTATAGGAAGAGGATAATATCCAG--------------GAAGACCCTCTGTTGA----CTCCTGAGATGCCC---AAACCACAGCTCTAATAGAAGAAACCAGAACCCACTC-----TGCTCT-TTAAATGCCAATGGGCAAAAATCATTTTTAGAAGTCAAAGGACATAGAGCAATTTGGGGAAATTCTGAAGGCAGAGACTG-TGAATCATCACATCCACTGAAGCATGGAAGCTTTGGGTGAAGCTAAGGATTTGAGAGCTAAGCAGAGTCGTTTATGTAAGCGTAACAAATGCTAATCCACAGCAGTAAG---T s rn3.chr10 22190162 284 - 110733352 ----------------AGGGAGAGGATAATGCCCAG--------------GAAGACCCTCTCTTGA----CTCCTGAGGTGCCCCC-AAACCACAACTCTAATGGAAGAAGCCTGAACCCCACT----CCGCTCT-TTAAACGCCAAAAGGCAAGAATTATTTTTAGAAGTCAAAGGGCATATGGCAATTTGGGGAAATTTTGAAGGGAGGGACTG-TGACTCATCACATCCACTGGAGCACAGAAGCCCTGGGTGAAGCTAAGGATTTGAGAGGTAAGC--AGTCGTTTTTGTAAGCGTGACGAATGCTAATCCAGAGCAGTAAG---T s canFam1.chr9 14330511 325 + 53642819 ATTAAAAACCTTCTCTGTAAAGTGGGCTGTGCCATGGAGACCTGACAGCAGGTAGCCCTTTGTTAATTACTGACTGACTTATCCCCAAAACCATAACTCTGACTTGAGAAACCTGCTTTCCAACATGATTATTCT-ATAAATGCTAATAGGC-AAACTTAGTTTTAAAAGCCCAAGAATACAAAGGGATTTTGAGAAACT-TCAAGGGAGAAAATGTTGAGTCATCACATCAACTGAAGCATGAAAGCCTTAAGTGAGCCTGGGGA-TTGAGAATTAAGTAATTTTGTTCTAATAAGGTTCGGAGAGACTAATCCA-AGCACTAACTATT a score=2519.0 s hg17.chr17_random 2543028 12 + 2618010 ATGAGCCTATGT s panTro1.chr19 42811447 12 - 82489036 ATGAGCCTATGT s mm5.chr11 22404437 12 - 121648857 GTGACTGCACAT s rn3.chr10 22190446 12 - 110733352 GTGACTGCACAT a score=16615.0 s hg17.chr17_random 2543040 43 + 2618010 TGGGCCTATTCATTTCTAAGCACGTTCTCTTTTTTCTTCTTTG- s panTro1.chr19 42811459 43 - 82489036 TGGGCCTATTCATTTCTAAGCACGTTCTCTTTTTTCTTCTTTG- s mm5.chr11 22404449 36 - 121648857 AGGGCCTGTTCCTTTCTAAGCGAAATCTCCAT-------TGTG- s rn3.chr10 22190458 36 - 110733352 GGGGCCTGTTCATTTCTAAGCACAGTCTCCAT-------TGTG- s canFam1.chr9 14331073 44 + 53642819 TGGGGCTATTCATTTCTAAAAACATTCTTTTTTTCTCTTCTTGA a score=7590.0 s hg17.chr17_random 2543083 36 + 2618010 TTCTTGCATTACAAATATGGGATAGAGAAACAGGAG s panTro1.chr19 42811502 36 - 82489036 TTCTTGCATTACAAATATGGGATAGAGAAACAGGAG s mm5.chr11 22404485 36 - 121648857 TGTTAACAATACTGTGGGAGGAAGGAGTAACAGGGG s canFam1.chr9 14331117 36 + 53642819 TTCCTACATCACAAATACAATACAGAGTAAAAGAAT a score=-311.0 s hg17.chr17_random 2543119 6 + 2618010 TGGTAG--------- s panTro1.chr19 42811538 6 - 82489036 TGGTAG--------- s canFam1.chr9 14331153 15 + 53642819 TGATATACTATGTGg a score=45946.0 s hg17.chr17_random 2543125 269 + 2618010 -----AATACACAACATGAAAATCAAAATTCCTGGCTTTTAATGGGTTAATATTTAACATACAAAATTTC--GACTTTTATTTTCTCAATTTTTTAATATCTTATTTATTTTAGTTGCATGAATGAAACAAACGAGATATTTTCCCAAAAGGATCAGAGAAATCTTGGTCCAAATGGGGCCAGAGTAAAGAACTACAATTATGTTATCTCTAAGACAGTACTGACTTGTTCAAAAGATGACACCTGTGACCCTGGAAAAAAAAGATCCTAGTGGGC s panTro1.chr19 42811544 269 - 82489036 -----AGTACACAACATGAAAATCAAAATTCCTGGCTTTTAATGGGTTAATATTTAACATACAAAATTTC--GACTTTTATTTTCTCAATTTTTTAATAACTTATTTATTTTAGTTGCATGAATGAAACAAACGAAATATTTTCCCAAAAGGATCAGAGAAATCTTGGTCCAAATGGGGCCAGAGTAAAGAACTACAATTATGTTATCTCTAAGACAGTAATGACTTGTTCAAAAGATGACACCTGTGACCCTGGAAAAAAAAGATCCTAGTGGGC s canFam1.chr9 14331350 250 + 53642819 TATATACTACATGACCTCAAAATCAAAAATGCTGGCTTTTACTAGAATAACATTGAAAACACAAAATTTCAAGACTTTTG-TCTCTTAGTTTTTCAATATAGTATTGATCTTCA----GTGGAAGAGACAAACTAAATCTTTTCCCAAAAGGATGAGAGGAATCTTGGTCTGAAGGGAGCCAGAATAAAGTA-------------------AAGATAGTATTGTTTTGTTCAAAAGATAAGATCTGTAAACCTG--CAGAAAAGATGCCAGTAGGC a score=15863.0 s hg17.chr17_random 2543394 59 + 2618010 TGATAACCTTACGGTAGGAAGAAGGGAAAGAACTCAGGATTTTCAGAGCAACTGAAGCC s panTro1.chr19 42811813 59 - 82489036 TGATAACCTTACGGTAGGAAGAAGGGAAAGAACTCAGGATTTTCAGAGCAACTGAAGCC s rn3.chr10 22190494 57 - 110733352 TGCTAACAATACTGTGGGATGAAGAG--GTATCTGGGGATCTCCAGAGGAGCTGGCATC s canFam1.chr9 14331600 59 + 53642819 TTATAACACTGTGGGATGGAGAAGTGAAGGAACTCAGGATTTTCAGAACCACTGAAGTT a score=97443.0 s hg17.chr17_random 2543453 334 + 2618010 AGGAAGCATGAGGAAGTTTGAGAAGAGTTAGAGATGG----CAGAGGTT----GACAGCAACAGCCACAAAAAACTCTGAACAGAAGGA---AATTCAACGTTCTCTATTCAGGAGAGGT--TGAGGGAGACA--AAACAATA----GAATCCTAGAGATAGAATTCAGGAAA------------CTCTGAGGTTAACATTTTTGCCCTTTACTCCAACGCTTGTTGGTTTAG-TGATCAGAAGGGACCAAACAGAAAGAGAACTGCACAAAAGCCAGGGATAGTAGTTAGAGGGAACCAGAAGCTGAGACTAGAAGTCATACAAAACACTTGTTTTGTGTGTTAACGTGTACTAAGCAAAACAAA s panTro1.chr19 42811872 334 - 82489036 AGGAAGCATGAGGAAGTTTGAGAAGAGTTAGAGATGG----CAGAGGTT----GACAGCAACAGCCACAAAAAACTCTGAACAGAAGGA---AATTCAACGTTCTCTATTCAGGAGAGGT--TGAGGGAGACA--AAACAATA----GAATCCTAGAGATAGAATTCAGGAAA------------CTCTGAGGTTAACATTTTTGCCCTTTACTCCAACGCTTGTTGGTTTAG-TGATCAGAAGGGACCAAACAGAAAGAGAACTGCACAAAAGCCAGGGATAGAAGTTAGAGGGAACCAGAAGCTGAGACTAGAAGTCATAGGAAACACTTGTTTTGTGTGTTAACATGTACTAAGCAAAACAAA s mm5.chr11 22404552 309 - 121648857 ----------AGGGAGTTTGAGAAGAGCTAGAAGTGA----CAGCGTGT----GGGAGTGACGGCTGAGAAGGGCGCAAAGCAGACAGACGGGGTCCGAGGTTCTTCACGACGGAGGTGA--CAAGGAAGACA--AAATGATA----GACGTTT-GACCTAGCACTCA-GAAC------------GTACAAGCTTCGTGTTTTTAAACCTTATTCAAACACTCACT-GTTTAG-TGAGCAGAGAGGACCTGG-ATAAACGAAACGGCAGAAAGGCCAGGGAGAG-AGT------------AAAGCTGGGTTTGGGAGG-ATGCCGGCGTCTCCGTTGATGTGTTGGCATGCGCTAAGCGAAACAAA s rn3.chr10 22190551 323 - 110733352 AGGAATGACGAGCGAGTTTGAGGAGAGTTAGAAGTGACAGCCAGCGTGT----AGGAGTGGCAGTCTCGAAGAGCACAAAGCAGACAG----GGTCCGAGCTTCTTCACTGCGGAGGTGG--CAAGGAAGACA--AAACGATA----TAAGTTT-GACCTCGTACTCAGAAAATACGAGGTCCATGTTTGAGGTCCGTGTTTATAACCCTTATTACAATACTCACT-ATTTAG-TGAGCAAAAAGGACCAGA-ATAAA---------AGAAAGACCAGGGAGAG-AGT------------AAAGCTGGGTTTGGGAAG-ATGCCAATGTCTTATTTTGTATGTTAGCATGCGCTAAGTGAAACAAA s canFam1.chr9 14331659 308 + 53642819 GTCAACCATGAGAAAGTTCAAGAAGAGTCA-AGATGA----CAGATGTTTATCTAGAATAACAGCCAGGAAGATCTTGATGCAGGAGA----AATTCATGGTTCTCCCCTTAGGGGGCATCCCTGGGGAAACAGGAAACAATACAATGAATCCTGAAGATAGAATTCAGGAAA------------CTCTGAAGTTAGTATTTTGAACCTTCATTCCAATATTTACA-GTTTAATTGAACAGAAGAGACAAAAATGAGAGAGAAGTACACAAAGGTTAGGAATAGAAATTAGTATGGACCAGGGGCTGAGACTGGAAGT------------------------------------AAGCCAAACAAA a score=0.0 s hg17.chr17_random 2543787 5 + 2618010 CTTGT a score=67.0 s hg17.chr17_random 2543787 1 + 2618010 C s panTro1.chr19 42812206 1 - 82489036 C s mm5.chr11 22404861 1 - 121648857 T s rn3.chr10 22190874 1 - 110733352 T a score=241.0 s hg17.chr17_random 2543788 4 + 2618010 TTGT s panTro1.chr19 42812207 4 - 82489036 TTGT s rn3.chr10 22190875 4 - 110733352 TACT a score=2500.0 s hg17.chr17_random 2543792 9 + 2618010 TATGTTGTT s panTro1.chr19 42812211 9 - 82489036 TATGTTGTT s rn3.chr10 22190879 9 - 110733352 TGGCTGGTT s canFam1.chr9 14331967 9 + 53642819 TATATTGTT a score=884.0 s hg17.chr17_random 2543801 4 + 2618010 TCTc s panTro1.chr19 42812220 4 - 82489036 TCTc s rn3.chr10 22190888 4 - 110733352 TTTC a score=31423.0 s hg17.chr17_random 2543805 341 + 2618010 aggggtccccaagccccgggttgcagagcgatacctgtccctggcctgttaggaactggatcacatggcaggaggtgagcagccgaggagcaagtgttcccacctgagctttgcctcctgtcagctcagcagatcggcggtggcattagattctcacagaagcgcaaagcctattgtgaaccgcacgtgcgagggatcaaggttgcacgttccttgtgagaatctgtctgaggtgggacagtttcatcccaaaaccatcccaccttcatcccacccacagtccatggaaaaattgtcctccatgaaaccggtccctggtgtcaaaaagaatggggactgct s panTro1.chr19 42812224 341 - 82489036 aggggtccccaagccccgggctgcagagcgatacctgtccctggcctgttaggaactggatcacatggcaggaggtgagcagccgaggagcaagtattcctgcctgagcttcgcctcctgtcagatcagcagatcggcggtggcattagattctcacagaagcgcaaagcctattgtgaaccgcacgtgcgagggatcaaggttgcacgttccttgtgagaatctgtctgaggtgggacagtttcatcccaaaaccatcccaccctcatcccacccacagtccatggaaaaattgtcctccatgaaactggtccctggtgtcaaaaagactggggactgct a score=1119.0 s hg17.chr17_random 2544146 4 + 2618010 ATTG s panTro1.chr19 42812565 4 - 82489036 ATTG s canFam1.chr9 14331978 4 + 53642819 ATTG a score=25765.0 s hg17.chr17_random 2544150 119 + 2618010 TATTTGAGTATAGGTTG-ACACTTTAATCACTCTGAAGATGTTTTT-AACTGTAGGAaggggcagagagtgggatga-gaaaggaatcagaagacctgagtttaaaatcccaactctactca s panTro1.chr19 42812569 119 - 82489036 TATTTGAGTATAGGTTG-ACACTTTAATCACTCTAAAGATGTTTTT-AACTGTAGGAAGggacagagagtgggatga-gaaaggaatcagaagacctgagtttaaaatcccatatctactca s mm5.chr11 22404862 89 - 121648857 AACTTGAGT----------------------------GGTGTTTCC--ACTGTAGGCA-GGACACAGAAGAAGATGATGAAAGGAGTCAGGAATCCCAAGTTCAAA--CTCAAATCTACTCT s canFam1.chr9 14331982 109 + 53642819 TATTTGAGTACAGATTGTACACTCTGATCACTTGAAAGACATTTTTTAACTGTAGGAAGGGACAAA------------AAAAGGAATCAGAAGACCTAAGTG-AAAATCCCAAATTTACCCA a score=20425.0 s hg17.chr17_random 2544269 197 + 2618010 ctcactgactgt-----gaccttagacaagtcttctcagaagctcagtttttgtcttctatatcaaatgggggttctaatatgtcacagtattgctgtgaataacaaataaggttattaatagtaatatgcctggcatatagtaggtgctccagaaattttattttctattCCTCTTCTCCACTCAAGTGTATGTCTTCAGG s panTro1.chr19 42812688 197 - 82489036 ctaactgactgt-----gaccttagacaagtcttctcagaagctcagtttttgtcttgtatatcaaatgggggttctaatatgtcacagtattgctgtgaataacaaatgaggttattaatagtaatatgcctggcatatagtaggtgctcaagaaattttattTTCTATTCCTCTTCTCCACTCAAGTGTATGTCTTCAGG s mm5.chr11 22404951 155 - 121648857 CTGGCTGACTGTAGATGGGTCTCAGAGA----TCCTCTGAAGC-CATTTTTAAACCATTGTTT---AGGGAGAGTTCAATGTCTCG-AGAACTACTGTGAGC-ACCACTAAAATACTCAATAG-----------------------------------GTTATTTTCCCTGCTTC--CTTCATTCAAATCTATGTCTTTTGG a score=19934.0 s hg17.chr17_random 2544466 106 + 2618010 AGCAGAA----------AGCCCTTTTGGCTATGGAGAGGATAGCATGAGCCAGATAGTCATGTGT--GG----AAAATAGCTTTAAAAA-TAGGAAGAGC-ATTGCTCAGGGTGATGTTGTATT s panTro1.chr19 42812885 106 - 82489036 AGCAGAA----------AGCCCTTTTGGCTATGGAGAGGATAGCATGAGCCAGATAGTCATGTGT--GG----AAAATAGCTTTAAAAA-TAGGAAGAGC-ATTGCTCAGGGTGATGTTGTATT s mm5.chr11 22405106 121 - 121648857 AGGAGGAAAAAAAACCCAACTCTTTAGAGTATTGTGAGGACAGAAGACACCAGACACTCGGGTGT--GGGTGAGAAATAGCTGTGCCAA-CAAGAAAGGAGATTAACTCGAGTAATTTCTCATT s canFam1.chr9 14332106 109 + 53642819 AGCACAA----------AACCCTGTTGACTGTTAGGGGACTAACAATGCCCAGATACACAAGAGTCAGG----AATAAAGCTGAGAAAACTAGGAAGAAG-GCTGCCCAGGATGATGTTTTACT a score=5283.0 s hg17.chr17_random 2544572 52 + 2618010 CCATTTGAATAAAATGGATCACATAAAAAtggtcatctcattctcagtccaa s panTro1.chr19 42812991 52 - 82489036 CCATTTGAATAAAATGGATCACATAAAAATGGTCATCTCATTCTCAGTCCAA s canFam1.chr9 14332215 31 + 53642819 CCATTTG--------------------GGTGGTTG-CTCCTTCTTTATCTAA a score=0.0 s hg17.chr17_random 2544624 53 + 2618010 gcgcttcatagtaagcacagttttcatctatatgttggagccttccaaatctt a score=4599.0 s hg17.chr17_random 2544624 50 + 2618010 gcgcttcatagtaagcacagttttcatctatatgttggagccttccaaat s panTro1.chr19 42813043 50 - 82489036 GCGCTTCATAGTAAGCACAATTTTCATCTATATGTTGGAGCCTTCCAAAT a score=174.0 s hg17.chr17_random 2544674 3 + 2618010 ctt s panTro1.chr19 42813093 3 - 82489036 CTT s mm5.chr11 22405408 3 - 121648857 CAC a score=6517.0 s hg17.chr17_random 2544677 58 + 2618010 cacctccagcactgaGCGTGGTGTACTCTCGAAAATCAAAACACAC--AATATTAGTGGG s panTro1.chr19 42813096 58 - 82489036 CACCTCCAGCACTGAGCGTGGTGTACTCTCGAAAATCAAAACACAC--AATATTAGTGGG s mm5.chr11 22405411 31 - 121648857 CACTCCTAGTACTCGTGGGAATGTTCTCT-----------------------------GG s canFam1.chr9 14332246 45 + 53642819 CACATC---------------TGCACTCTCAAAAATCAAAACACTCTTAATATTTGTAGG a score=15678.0 s hg17.chr17_random 2544735 40 + 2618010 -AACGTTTATCTC-----ATGTTATCTTCCT--CCTTTCTGCTCTTTT s panTro1.chr19 42813154 40 - 82489036 -AACGTTTTTCTC-----ATGTTATCTTCCT--CCTTTCTGCTCTTTT s mm5.chr11 22405442 45 - 121648857 -AACGTTCTCCTCGCACAGTGTTCCTTCCTT--CCTTTCCGCTCTTTT s rn3.chr10 22199048 45 - 110733352 -AATATTCTCCTCATGTAATAATCCTTCCTT--CCTTCCCGCTCTCTT s canFam1.chr9 14332291 43 + 53642819 AATTTTTTTCCAC-----ATGTGATGTTCCTCACCATTCTGTTCTTTT a score=90452.0 s hg17.chr17_random 2544775 543 + 2618010 CATCC----CAATGGACTCAGATGTCAAATTTCCACTCAGGAAAACTGACCGGCTATAATTACAAGCTGTTGCAATACATCTTATTCTACAGAGGAAATTTTTAACTGTATCAAAATATAAATTGTGTCACTTC-ATGTAAATCACAGATAGTAATAAGA-AAGAATG---AGGAAGAAGTCACGCTCAAGCAGCTAGAGCATTTCTTCAGTCCCCTCTGAGTAATAAATCCTGCTAGGCGTTTGTGATGACTGCCTCCTGAAAAAGGCAACGTGGTAGAGGGGACATGAGGAGTGCACACTGCTTACCAGTGATCTCACAGGGTTCCAGCAAAGCAAGGTCGAGGGGCA-CAGTTTG-CTTTTTGGAGGCGGGGTCTTCACTGGTTACAAAAACTATAATGAAGACTATCAACAGGCAGGCTTTCCAGGCGTGGGAAACCTAAAAGCTAAACTCCCAAATTTAGCCCTAGATTCCCTATCGTCGGAGAGAAAGAATACCTGAAAATGACGGGGAAGAAAAAAGCTCCAGCCTCCCTCTGCTTATTTAGTAACA s panTro1.chr19 42813194 543 - 82489036 CATCC----CAATGGACTCAGATGTCAAATTTCCACTCAGGAAAACTGACCGGCTATAATTACAAGCTGTTGCAATACATCTTATTCTACAGAGGAAATTTTTAACTGTATCAAAATATAAATTGTGTCACTTC-ATGTAAATCACAGATAGTAATGAGA-AAGAATG---AGGAAGAAGTCACGCTCAAGCAGCTAGAGCATTTCTTCAGTCCCCTCTGAGTAATAAATCCTGCTAGGCGTTTGTGATGACTGCCTCCTGAAAAAGGCAACGTGGTAGAGGGGACATGAGGAGTGCACACTGCTTCCCAGTGATCTCACAGGGTTCCAGCAAAGCAAGGTCGAGGGGCA-CAGTTTC-CTTTGTGGAGGCGGGGTCTTCACTGGTTACAAAAACTATAATGAAGACTATCAACAGGCAGGCTTTCCAGGCGTGGGAAACCTAAAAGCTAAACTCCCAAATTTAGCCCTAGATTCCCTATCGTCGGAGAGAAAGAATACCTGAAAATGACGGGGAAGAAAAAAGCTCCAGCCTCCCTCTGCTTATTTAGTAACA s mm5.chr11 22405487 450 - 121648857 CTTTCTTCACACCCGATCAAGAAGCCAAATTCCCTCTC------ACTGACCAACTAGAA-TATGAACAGTTCCCTCCTCTCTCATACCCTAACTACATTGCCTAAGTGTATTGAAATG------ACATCCTTTCTATATAAGTCGTAAGGGTTAATGACATCCGAGGG---ACAGAGAAGTGGTAGTCAAGCTCACAGA--------------------GAATATGGGAGCCAGCT--------------GCTTCTTTCTG-----GTTAACCT-------------------GTCCACAC-----ATAGGTAACATCACAGGACTCCAGCAGGGCGAGGCAAAGAGACATCAGCCCT-TCTGGAGAAGGCAGGGCCTCCACTGACTTGAAAGGTTTGGATGAAGACTGATAA-----AGACCTTCCACAAGTGAGACACCACGGAGCTAAAACCTCAACTTTA-CCTCAGGCTCCCCATAGG-GGACAGAAAGAAT-----------------AATAAAAGAGCCCCGGTTCCCCCACTCCTGTTCAACAACA s rn3.chr10 22199093 448 - 110733352 CTTTCTTCACACCGAACCAAGAAACCAAATTCCCTCTC------GCTGACCAACTAGAA-TGTAAACAGCCCCCTTCTATCCCATCCCCCAACTACACTGTCTACGT-----------TGAATGACGTCCCTTCAGTATGCGTCACAAGTGTAAATGATA-AGCAAAGCACAGGAAGACGTAGGAGCCAAGCTCACAGA--------------------GACTCTGGGGCCCAGCTGGCTCTTTCTGAT-------------------TAACCCG-------------------TCCACAC-----GTGAGCCACGGCACAGGACTCCAGCCGAGCAAGGCAGAGAGACATCAGCCCCGTCTGGAGAAGGCAGGGACTCCACTGACTTCAAAGGTTTTGTTGAAGACTGGGAA-----AGACCTTCCAGAAGTGAGACACTAGGAAGCTAAAACCTCAGCTTAA-CCTCAGACCACCCATAGG-GGACGTAAAGAGT-----------------AATAAAAGAGCCCCAGCTCCCACCTTCTTATTCAACAACA a score=40547.0 s hg17.chr17_random 2545318 438 + 2618010 ACAATCACACCTATTAGAatcatttattgaggacttactatgttccaggcactgcattgcacattttaatgctttctttaatttattctttaaacatcctatcaatgtgatagtaacattagccatatttacaaatgacggagttaaagAGGTAACTTCCTGCCTTAGAAAAATATATACCAGTGGTTCTCCATGGGTCTACTTAATTCAAGTTCAAACACCTCATCCTGGGGTCAAGACTCTACATCTTGCTTTTATCTCACACAATTGTTctctagacacagcgcactattcatggcttcctaacaaccatttgttcttttccacttctatgcatttactgctgctgttccctatagctggaatgccttcctactcctctgccttgcattcaagccctgtgtaccctgcgaatcccagtaaattctcagatatTTA s panTro1.chr19 42813737 438 - 82489036 ACAATCACACCTATTAGAatcatttattgaggacttactatgttccaggcactgcattgcacattttaatggtttctttaatttattctttaaacatcctatcaatgtgatagtaacattagccatatttacaaatgaaggagttaaagAGGTAACTTCCTGCCTTAGAAAAATATATACCAGTGGTTCTCCATGGGTCTACTTAATTCAAGTTCAAACACCTCATCCTGGGGTCAAGACTCTACATCTTGCTTTTATCTCACACAATTGTTctctagacacagtgcactattcatggcttcctaacaaccatttgttcttttccacttctatgcatttactgctgctgttccctacagctggaatgccttcctactcctctgccttgCATTCAAGCCCTGTGTACCCTGTGAATCCCAGTAAATTCTCAGATATTTA a score=137441.0 s hg17.chr17_random 2545756 782 + 2618010 AGAGTACACC-AtgtcctgcttgtccttgaatgccttaaatctcctagcacagtacaaagcaaacagcaggtgctcaacagagataggttgaaATAAACCAAGTTATAT--------------------------ATTTTCTCTTGAAAAATGCAATAATCAATAATAGAGAAATTATAAACTAATgtatagtgactaagaatgcagactctggggtcaggtggccttggttcagattttaattccatcacttaccag-------------------------ctat-----------tgactttgagcaacttacttaaccactctatgcctcagtttccttcagctatgaaagagaggatagctttaataccaacctcatagggctgtggtaagaattaaatgacatgatacgtgtagtgcacttttaaaaaaatctgtcacacagaaaattctGTATGAGAATTTGCCCTTACCATATAGCCAACTATATGTTTAGTAAAATAAGCTAAAAACTCAAAGTATATTTTAAAGCCATAGTGTCAGCTAATATTTAAATACAT-AACAATTAAGTCTC-----TTCAAAAAATTTCAAGTAC-TGCAGGAGCTCTTTGGAAAATCAGTGGTCATTCAATTCAATACAGTAGTCAGATTTATCTAATCAATGGAGAAAAAAGTCTCTGATTCAAAATAAATTTATAA---------------AGT----------------------------------------------------------------------ACAACTA-----TTGTTAGAAAATAATTCCAAGGATGAAAATTCCAAAGCTTACTCTAGAATAATTGTAAGTTTAAATATCTCAAT-----ACTTCACATAGTAGGCAGCTGAAAATTTTATTTTACcagtgcctggcatatagt---aggtactc s panTro1.chr19 42814175 787 - 82489036 AGAGTACACC-AtgtcctgcttgtccttgaatgccttaaatctcctagcacagtacaaagcaaatagcaggtgctcaacagagataggttgaaATAAACCAAGTTATAT--------------------------ATTTTCTCTTGAAAAATGCAATAATCAATAATAGAGAAATTATAAACTAATgtatagtgactaagaatgcagactccggggccaggtggccttggttcagattttaattccatcacttaccag-------------------------ctat-----------tgactttgagcaacttacttaaccgctctatgcctcagtttccttcagctatgaaagagaggatagctttaataccaacctcatagggctgtggtaagaattaaatgacatgatacgtgtagtgcacttttaaaaaaatctgtcacatagaaaATTCTGTATGAGAATTTGCCCTTACCATATAGCCAACTATATGTTTAGTAAAATAAGCTAAAAACTCAAAGTATATTTTAAAACCATAGTGTCAGCTAATATTTAAATACAT-AACAATTAAGTCTCTTAATTTCAAAAAATTTCAAGTAC-TGCAGGAGCTCTTTGGAAAATCAGTGGTCATTCAACTCAATACAGTAGTCAGATTTATCTAATCAATGGAGAAAAAAGTCTCTGATTCAAAATAAATTTATAA---------------AGT----------------------------------------------------------------------ACAACTA-----TTGTTAGAAAATAATTCCAAGGATGAAAATTCCAAAGCTTACTCTAGAATAATTGTAAGTTTAAATATCTCAAT-----ACTTCACATAGTGGGCAGCTGAAAATTTTATTTTACcagtgcctggcatatagt---aggtactc s canFam1.chr9 14333248 925 + 53642819 aAAGTACACCTGtgtcctgcccatccctaagtcccctaaatcccctagtacagtgcaaagcaaatagcaggggctcaacaaagattggctgaaATAAGCCAAATAATTCAATTATTTGAAATTTGAAAATTTCTAATTTTCTCTTGAAAAATATAATAATCAATAATGGAGTGATTATGGATtagtatacactgattaagaacacagaccttggagccagagagctggggttcaaatcccaactccactatttaccagtggctggggttcaaatcccactccactatttaccagtggctgaccctgaacaacttatt----ctctctgtgtctcagtttccctcatctgtaaaacagaggataccttcaataccaagct--ttggactgttgtaagaattaaatgacataatacatgtaaagcac------agaacCTTATCA---ATTAAATACTA-GTAAGCCTTTGCTGTTATCATAAAATCAGCTGTATGT----TATAGTAAACTAACAACTGAAGATATGTTTTAAAGTTATCATGTCAGCtaatatttaaatacataaacatttaattatcttaatttttaaaaatttCAACTACTTACAGGAGCTGTTTGGAAATCCAGTAGCTATTTGATTCAATCCAGTAATCAGATTTGTCTAACCAATGGACaaaaa--tatttaattcaaaataaaattataaCTATTTGGTAACAATAGTTATTTGGTAACTAATTATTTGGTAACAATGGCTATAATTTTATTTTGAATTAGATGTTTTTGATTTGATAACAAATAATTATTTGTTATCAAATAATTCCAAGGATAAAAAGCCCGACTTTTACTCTAGAATAATTGTA--TTTAACTATCTCAATCTTCAATTTCACACAATGAAGAGCTGGAAATTTTATTTTCCCAGTGCCT-GCATATATTCAAATATATTC a score=2865.0 s hg17.chr17_random 2546538 11 + 2618010 aaATTTTATGG s panTro1.chr19 42814962 11 - 82489036 aaATTTTATGG s rn3.chr10 22200295 11 - 110733352 AACTGTTACTC s canFam1.chr9 14334173 11 + 53642819 AAATTTTACTG a score=73393.0 s hg17.chr17_random 2546549 359 + 2618010 AGTGTCTATTTTCCTAAACATATTAATTTTAGTTAA-CACATAT-TTTTATATATTAGTTAATCATAAAGAATTATCTGTTACTATCTGTATACTCCACAGCCTACAATAATACATAAGAATTAAACTGAAAGCCTAGGGTTCCC------AGGAAAAATAGGTAACACTTCCAGCC------AGCTGG-CTAAGCAATCACTTGCAAGAATGTTGCATGTGCCA-CGGGACTGAAAGCTATGAGATC-------------------------------AGCCC-TGCATGTTGCCAGATGACAAT--------------TATAGA------------------------------------------GACT------------ATCAGATGTCCTCA--AGT--------GGAAAACACCACTACTTCCATTTAAAAGAAATT---CAATTTGGGGGTAATTTTCAGTGCAAGCTAATAAGGTGATG s panTro1.chr19 42814973 359 - 82489036 AGTGTCTATTTTCCTAAACATATTAATTTTAGTTAA-CACATAT-TTTTATATATTAGTTAATCATATAGAATTATCTGTTACTATCTGTATACTCCACAGCCTACAATAATACATAAGAATTAAACTGAAAGCCTAGGGTTCCC------AGGAAAAATAGGTAACACTTCCAGCC------AGCTGG-CTAAGCAACCACTTGCAAGAATGTTGCATGTGCCA-CGTGACTGAAAGCTATGAGATC-------------------------------AGCTC-TGCATGTTGCCAGATGACAAC--------------TACAGA------------------------------------------GACT------------ATCAGATGTCCTCA--AGT--------GGAAAACACCACTACTTCCATTTAAAAGAAATT---CAATTTGGGGGTAATTTTCAGTGCAAGCTAATAAGGTGATG s mm5.chr11 22406681 403 - 121648857 AGTGTCCCTTTTCCTAGACATATTAACTTTGGTAAAGTATTTAC-TTCTGCATGCTA-----------------CTCTCTTTCTCTCTACATCCTCTGTAATTTACAATAATACGTGAGACTAAAGC---GAACCTACAGACCCCCCCCCAAAAAAAAATGGTTCAGAATTCCAGCCAAAGGAAGCTGG-TTAAGCAAGAACTTGAAAGAATATTGCATGTATCA-TGTAACTAAACACCATGAGGTCT------------CTACTGGCATATTCAATGAAATC-AGTAAGTCCACAGGAAACAGT--------------GAGAGAG---------TTGCCTCTTTTGCACACCTATACAACAGCCATGGAT------------AACAACTGAGCTCA--------------GAAAATATCACTAAAGCCATCTAAAAACAATGTTACAACTTAAAGGCCATTTTCAGTGCAAGATAATATAGTAGCA s rn3.chr10 22200306 415 - 110733352 AGAGCCCCTTTCCCCAGCCACATTAACCTTGGGAAAGTATGTAT-TTCTTCA---TAGTTAAAC-TGCATGCTAGTCTCTCTCCCTCTTCAGCCTCTGTAGCTTACAGTAAAATACAAGACTAATAAAGCAAACCTACAGTTCCC--------CCAAAATTGTTCAGAATTCCAGCCAGAGGAAGCTGGTTTAAACGAGAACCTGAAAGGATACTACATGCACCCTTGTGCACAAACAGCTTGAGAGCTCTTGCGGCATAACCGATG------------AGATCGCATAAGTTGGCAGGGACCAGT--------------GAGAGAG---------TCACCTC-------------------------TGTTACATACCTACCCAACAGCCGTGCACACAAGTTGAGCTCAGAGAACTATCACTACTGCCGTTTAAAAAGAATGATACAACCTGAAAGCAATTTTCAGTGCAAGATAAGATAGCAGCA s canFam1.chr9 14334184 365 + 53642819 -GAAATCTATTTCCCAATCAGGTTAATTTTACTTAG-CACATATACTTTATACTTTCCTTAACTGTGTATAATATCCTATGACTATCTGCACATTCCATAGCCCACAATAATGAATGAGAATTAACC--------------CCCC------GAGAAAAATAGGCAACACTGCCAGCCAGCATAAGCTGGGCTAAGC-----------------TTGTGTGTGCCG-TGTGCCAGAGTACTGTGAGGGGGCTAGC-------------------------TGCCCTGGCATGTTGCATTGAGATCATACATGTCCACATGAGATAGAGTGGAAGGGCTCATCCCTTTTAAGT-----------------CAGT------------ATCAGCTGTCTTCA--AGT--------CGCAA--AACATTACTTCCATTTAAAAGAAACC---CAA--------------TCAGCACAGGCTAATAAGCTGGCA a score=-525.0 s hg17.chr17_random 2546908 3 + 2618010 AGA- s panTro1.chr19 42815332 3 - 82489036 AGA- s mm5.chr11 22407084 3 - 121648857 AGG- s rn3.chr10 22200970 3 - 110733352 AGT- s canFam1.chr9 14334549 4 + 53642819 AGCA a score=308687.0 s hg17.chr17_random 2546911 955 + 2618010 TATATCAGGCTTGACTATAACCACAAACTGGA--AAAAAAAAAAATCTGATGCAACTG-GAAAACACTCCCAAAGTTCACCATTTAACCCAAGCCCAGAATCCTTTGCATGAATTTT----CAGCATATA-------GCAAAGTAAACAAAGAATAAATTGATGTCAATGGCAGCCTTGATACCAGCCATTCTTTCTTTCAATCTAT-ACTATAAAGGAATGCACTGGCAGTTTCAAAGATCATGCA---------ATTCAGGAAATGAAGACC----------AAATGTTTTTATTTACTAGACATTTTTATTAGGATGACAAACTTTAAAGGTTTCTATATCCTGCTTTTGTGAAGGGATGAA---GAATTCCAACAGGCTTTAGGAAAATTGAGTGGCCCTAAGGTGTGAAGCTTC------CTAACATCCCTGCTGACTCAGGAGGTGACACTGTGGAAGGTGTTTCCCAACAGCCACCCACAAATTCACTGAGTTGTTGGGAGATGGATATTCGTAAGGCACAAAGTGGCTCACAGCAAAACATGACTAACGCACATAAAAGTGACTATCTCG-TTCTCAGTCCAGGCACATCATTGTAAGCAAAATTTTT-CCTGTATGTTGGAGCCTCCCAAATCTGCACGTCCAGCTCTGCTCCCTCTCACGG-CTTCAGGATGCTTTG-TCTGTAGGTCCCAAACTAAACTCATCTCCAATCCCTTTCCTATCACCCCAGACAGCAGCT-----G--------------TTTCTACGAGTAAATCTGACACC----TAGACATGATCCTTGGCTcc-------acacatcctctcaatcagcatgacctatcatctccactttc-aaaagggcttccaaactctaccacttcttaacagttcatcaaaaactagcatcaactgtctatcctcacac--------tttctagtcgtgccagtttccac-tttgctctgctgtagttcattttcctttgaacataaggaaaatgttatcactcccttctttaagtcatcc-agtgg s panTro1.chr19 42815335 955 - 82489036 TATATCAGGCTTGACTATAACCAAAAACTGGA--AAAAAAAAAAATCTGATGCAACTG-GAAAACACTCCCAAAGTTCACCATTTAACCCAAGCCCAGAATCCTTTGTGTGAATTTT----CAGCATATA-------GCAACGTAAACAAAGAATAAATTGATGTCAATGGCAGCCCTGATACCAGCCATTCTTTCTTTCAATCTAT-ACTATAAAGGAATGCACTGGCAGTTTCAAAGATCATGCA---------ATTCAGGAAATGAAGACC----------AAATGTTTTTATTTACTAGACATTTTTATTAGGATGACAAACTTTAAAGGTTTCTATATCCTGCTTTTGTGAAGGGATGAA---GAATTCCAACAGGCTTTAGGAAAATTGAGTGGCCCTAAAGTGTGAAGCTTC------CTAACATCCCTGCTGACTCAGGAGGTGACACCGTGGAAGGCGTTTCCCAACAGCCACCCAGAAATTCACTGAGTTGTTGGGAGATGGATATTGGTAAGGCACAAAGTGGCTCACAGCAAAACATGACTAACGCACATAAAAGTGACTATCTCA-TTCTCAGTCCAGGCACATCATTGTAAGCAAAATTTTT-CCTGTATGTTGGAGCCTCCCAAATCTGCACCTCCAGCTCTGCTCCCTCTCACGG-CTTCAGGATGCTTCG-TCTGTAGGTCCCAAACTAAACTCATCTCCAATCCCTTTCCTATCACCCCAGACAGCAGCT-----G--------------TTTCTAAGAGTAAATCTGACACC----TAGACATGATCCTTGGCTcc-------acacatcctctcaatcagcatgacctatcatctccactttc-aaaagggcttccaaactctaccacttcttaacagatcatcaaaaactagcatcaactgtctatcctcacac--------tttctagtcgtgccagtttccac-tttgctctgctgtaattcattttcctttgaacataaggaaaatgttatcactcccttctttaagtcattc-agtgg s mm5.chr11 22407340 916 - 121648857 TATGTCAGACTTGACTCTAACTACAAACTAGA--GAAAAACACCATTTTAC---------AGGATGTCTGAGATGGGCACCACTTAACCCAGGCTTAAAATTCTTTGCATGTATGCT----CCACAAAAT-------GGGCATTCTGCAGTGCGAAGATCAATATTCCCAGCAGCCCTGATGACGACCACATTTCCCTTCCATCTTC-TTTATAAAGTAA---------AATATCAGAAACCAGGAA---------GATTGTGTAAGACAGACC-----TACCTAAATGTTCTTGCTCAC-AGCCACTTTTATTAGAGTGAGAAACCTT-AAGATTTCTA-------CTATGATGAAGAGATAAACTCCTCCTCCAAACAGTTTCGGAAGTACTGAGTGACCCACGAGTGGGAAGCTGC------TTAGCACAGCAGCTGAATCAGGAGATGCCGGACTGGGAGGGTTCACCCAAGATCAACCCGGAAATCCACGGTGCTGTTG--------------GTTAGGCACTGGGAGGCTCACAACAAAGTGTGACTAACACATATAAAA---AGCATCACGAGCCTCCGTTTGG----AAGGTAGTAAGCAGAATTTCCATCTGCGTGCTGGAGCCG-CCAGCTCTTCAC-TCTAGCCCTACTTGGTCACGTGG----------GCTTGGCCCTGTTGGCCCCAAACTGAAGGCAACATTGATCGCTTTCCTACCA-CCCAGGCAGCTTTT-----GCTCAGGGCCCC---TTCCTATGAGTAGATCTGAGACCTGGATGGATAGGATTCCTGACCTCTCTCCGTATACAGCCTCTCGGTCAACAAAACACCTCACCCCTCCTTTC--TAATGTCACCCAAACTCTGCCTTCTCGTATCAGTTGCTCAGTGTCTACCCTC--TTGCCTAGCCTC--------------TATAATTCAGCCTACTTCCATGCCTGCCCTG-GGCAGATCATTCTCCTTCAAACAT-----GAAACCTATCACTCTCTGCTCTAAATCAACCGAGTAG s rn3.chr10 22200973 905 - 110733352 TATGTCAAACTTGACTCTGACTGTAAACTAGAGTAAAAAACACCACTTGATGGGGGTGTGGGGATGTCAAGGGTGGGCATCACTTAACCCAGGCTCAAAATCCTTTGCATGGATGCTTCACCTACAAAGT-------GGTCGTTCTGCAATGCAAGGATCAATATTCCTAGTATCTCTAGCGACAACCATATTTCCCTTCCATCTTC-TTTACAAAGAAATAA------AATATCAGAAACCCGGAAGAGTGTGTCATTTAGGTAAGACAGACCAGACCTACCTGAATGTTCTTGCTCAC-AGCCACTTTTATTAGAATGAGAAACCTCAGAGATTGCTA-------CTATTGTGAAGAGATAAACTCCTCCTCCAAACAGTTTGGGAAGTCCTGAGTGACCCACGAGTGGGAAGCTGC-------TAACACAGCCGCTGATTCAGGAGATGCCGGAGTGGGAGGGGTCACCCAAGATCAACCCGGAAATCCACAGTGTTGTTG--------------GTTAGGCACAGGGAGGCTCGCAACAAAGTGTGACTAACGCATATAAAA---AGCATCAGGAGTCTCCGTTTGG----AAGGTAGTAAGCAAAATTTCC-----------------------------------AGCTCTGCCTGGTCACGTGG----------GCTTGGCTCTGTCGGCCTCAAACTGAAGGCAACATTGATTGCTTT--------CCCTAGCAGCTTTT-----GCTCAGCGCCCC---TTCCCTTGAGTAGATCTGAGACCTGGATGGAGAGGATCCTCGGCTTCTCTCTGTACACAGTCTCTCAGTTAGCAAAGCAAGTCAACACCTCCGTG-CTAATGTCACCCAAACTCTACCTTCTTGTATCAGTTGGCCAATGTCCACCCTC--TCTCCTGGCCTC--------------TATAATTCAGCCTGCTTCCATGCCAGCCCGG-GGCAGATCATTTTCCTTCAAACGT-----GAAACCTATCACTCTCTGCTCTAAATAA----AGTGA s canFam1.chr9 14334553 950 + 53642819 CTTATCTGTCTTGGCTATAACGACACACTAGA--AAA------TATCTG----------GAAAAGGCCCCAAAAGTACACCATTTAACCCAAACCCAGAATCCTCTCCCTGCCTGCT----CAGCAAAGAATAAAGCGGACATTATACAATGAAAGGACTGATGCCAATAGCAGTCCTGAAGCCAGATACTTTTTTCTTCCAACTGCTATTATTAAGGAGTTCACCAGAAATAGAAAAGATCATGCA---------ATTCAGAAAACAAAGACT----------GAATGTTTTTACTTAC-AGGCATTTTTATTAGGATGACAAACTGAAAAGGCTCCTAATACCTGCTTGTGTGAAGGAATGAA---GTGCTCCATCAGGCTTAAAGAAAATTGAGTTGCCTCGAAGTGTGAAATCTCCCCACACTGACATTCTTGCTGACTCGGGAGGTGCCGTCATGGGAGGGTTTTCCCAACAGCACCCTAGAAATCCA---GGATGTTG--------------GTAAGGCA----------CACAACAAACTGTGACTAACACACATAAAAGTGACCTTTC---ATCCTAGGCCAGGAACTTAGTAGTAAGCACATTCTGTGTCTGGGTGTTGGAGCCTCCTGTGTCTTC------AGCCCTGCTACCTCTCATGGGCTTCAGGCTGCTCAT-CCTGCAGGTCCTACAATGACCTCACCATCCCCCGCTTC-CCACCACTCCAGATGGCAGCTCTGTGGCTCAAGCCCCCTCTTACCTACGAGTAAATCTGAGACC----TAAATATGAtcctttgtttctctctccacatgtcttcttaatcagcacaacctatcatctctactttcaaaaacatatccccaactcttccaactcttactggtttatcaatcactggcatc-actgttcatcctctcacctggaccactgattgttctgtctgtttccactttgaccctgctgcatctcactttctgcagaacat----aacatgttatcgccccctgctccaaagcatcc-agtgc a score=11208.0 s hg17.chr17_random 2547866 77 + 2618010 -atttcaacacccttagagtaaaatctaaactgtgtagaacaactaaaaaattctacatggcctgccacctgcc-acct s panTro1.chr19 42816290 77 - 82489036 -atttcaacacccttagagtaaaatctaaactgtgtagaacaactaaaaaattctacatggcctgccacctgcc-atct s rn3.chr10 22201878 61 - 110733352 ----GCAAAAT-----AAGTAACTTCTGATTTTTTTATGGCCCCTGAAAAATTC-AGATCATCTGCCAATT-------- s canFam1.chr9 14335503 77 + 53642819 attctcagtgcctttagaataaaacctaaactctattgagc--ctacaaaatcctacatggcccggcacctacctacct a score=11157.0 s hg17.chr17_random 2547943 140 + 2618010 tctgtaaccttatttcctattatactccttcaaaatcctacacgg-------cctgccacctgccaccttctgtAACCTTATTTCCTATTATACTCCTTCAAAATCCTACACGGCCTGCCACCTGCCAC------CTGCCACCTTCTGTAACC s panTro1.chr19 42816367 147 - 82489036 tctgtaaccttatttcctattatactccttcAAAATCCTACACGGCCTGCCACCTGCCACCTGCCACCTTGTGTAACCTTATTTCCTATTATACTCCTTCAAAATCCTACACGGCCTGCCACCTGCCAC------TTGCCACCTTCTGTAACC s canFam1.chr9 14335580 81 + 53642819 ccatgaacttcatctactttcacactcct----------------------------catttgccacact--------------------------------------------ccagccacctggcaagagaagttgccaactgccctggcc a score=0.0 s hg17.chr17_random 2548083 22 + 2618010 TTATTTCCTATTATACTccttc a score=1483.0 s hg17.chr17_random 2548083 16 + 2618010 TTATTTCCTATTATAC s panTro1.chr19 42816514 16 - 82489036 TTATTTCCTATTATAC a score=1806.0 s hg17.chr17_random 2548099 6 + 2618010 Tccttc s panTro1.chr19 42816530 6 - 82489036 Tccttc s mm5.chr11 22408532 6 - 121648857 TCCTTG s rn3.chr10 22202188 6 - 110733352 TCCCCG a score=56098.0 s hg17.chr17_random 2548105 310 + 2618010 aaaatcctacacggcctgc--cacctgccacc-ttctgtaacctcatttcctattacgctcctt-----gtcttcactatagtccagccactctgaccACTCTAACTA-AGGTAATACA------------ctccctggcactt-------------------------------c-----------------------------------------tct-ggagttcttatttattcatttgttagttttcttattgtc----tgtctctcccac--ttgac--------aacaaggaccttatctgacctgtttattgctctatgcttagcacctagcatagtcttagacatTTTGTTGAGGGCATTAATAAA-TTTAAAAAATACATGAGCATAATCTACAATTATATAAAATTTA s panTro1.chr19 42816536 310 - 82489036 agaatcctacacggcctgc--cacctgccacc-ttctgtaacctcatttcctattacactcctt-----ctcttcactatagtccagccactctgaccACTCTAACTA-AGGTAATACA------------CTCCCTGGCACTT-------------------------------C-----------------------------------------TCT-GGAGTTCTTATttattcatttgttagttttcttattgtc----tgtctctcccac--ttgac--------aacaaggaccttatctgacctgtttattgctctatgcttagcacctagcatagtcttagacattttgttgagggcattaataaa-tTTAAAAAGTACATGAGCATAATCTACAATTATATAAAATTTA s mm5.chr11 22408538 365 - 121648857 AAAACCGAGCCTGACCAGC--TGCTGAATGAC-TACTTTGATACGGTCTCCTATCACAGTTCTTCAGCAGCCCTGGCTAAGA---AGAC-CTCTGACTTCCCTAATCACAGGGGCCACCCTCCATTGCTATCTCCCTGTCACTC-------------------------------CATGTGTCAGTGTGCTTTCTTTCCTTCTAGCACCTGTCACTGTCT-AAAGTTCTTAGGTGTTCAATGGTTTATTTCATGGCCATCAGGTTGACGTTACTACGATAGACACTGT---AACAAGGAGCCAATCTGA-ATGTTTATTGGTGTACTCTTACTACCAAACATAGCACAGGTTATTTTTTAATGGG--TTAGTAAA--TGAAAAAATATATAA-------TTATAATTATATAAAATTTA s rn3.chr10 22202194 368 - 110733352 AAAACCCTATCTGACCAGC--TGCTGACTGAC-TTCTTTGACACCGTCTCCCATCGTAGTTCTT------CACTCACCCTGGCAAAGAC-CTCTGACTTTCCTAATCACAGGGGCCACACTCCAATGCTCTCTCCTTGTCACTCACATGTCAATATGTTTTCTTTCTTTCTAGCAC--------------------------------CTGTCACTGTCTAAAAGTTCTTATGTGTTCAGTGGTTTGTTTCGTGACTGTCAGTTGGAAGTCACAGTGATGGACACTGT---AACAAGGAACCAATCTGA-ATGCTTATTGATGTACTCTGACTACCAAACACAGCACAGATTATTTT-TAATGAG--TTAGTAGA--TGAAAATATACATATATATAATCTAAAATTATATAAAGTTTA s canFam1.chr9 14335661 269 + 53642819 aatggagtgcactccctgcatcacctcccaccactctgtcacttca----ccattttattttct---------------------------tctggc------------a------------------------cctgttactt-------------------------------c-----------------------------------------tca-----ttgtcatttctttatttttt--tttattgcctatc----ttcccctactagaatgaataccctgaccacaaggctcttatccgacctgttaacttctatatgcatagcacctaccatggtgctgggtattttgctgaatgaattaactaattttaaaaaatgaatgaatACAGTTTACAGTTGTGTAAAATTTA a score=-2565.0 s hg17.chr17_random 2548415 27 + 2618010 ATTC---------CACAAAAATA----------------------TCGATTT---------------TGTGCA s panTro1.chr19 42816846 27 - 82489036 ATTC---------CACAAAAATA----------------------TTGATTT---------------TGTGCA s rn3.chr10 22202564 73 - 110733352 ACTGAAGACATAGCTCAAGGGTAGAGCACTTGAAAGATTCTATGTTCAATTCCTCAGTGTGTGTGTGTGTGTA s canFam1.chr9 14335930 35 + 53642819 ATCC---------CAGAAAAATG----------------------CTAATTT-----TTACTATAAATATG-- a score=46822.0 s hg17.chr17_random 2548442 161 + 2618010 AACTATTGCTATTAGGTGAGCCATcgttcactagtagtgtgactttagaatca-ttacttaatatcctta--ttcttggtttcatcatctgggaaatgggtacagtaatagtgtacccaatagtgatcttaaagggttgtaagatgtaaggaagaagatgcaca s panTro1.chr19 42816873 157 - 82489036 AACTGTTGCTATTAGGTGAGCCATcgttcactagtagtgtgactttagaatca-----ttaatctcctta--ctcttggtttcatcatctgggaaatgggtacagtaatagtgtacccaatagtgatcttaaagggttgtaagatgtaaggaagaagatgcaca s mm5.chr11 22409068 133 - 121648857 AGCTATGG-TGTCAGCTAAGTCATTTTTCATTAGCCATGCAACTCCATACTCAATAATATAATATCTTTG--CTCT---TTTTATCACCAAGAAAGTGGGCATAGT----------------TTGGTCTTA--------TAGGATAT-AGAAAGAACATGCATA s rn3.chr10 22202649 129 - 110733352 AGCTGTGA--ATCAGATAAGTCATTCTTCATTGGCTATGCAACTCCATACTCA-----ATAATATATTTATGCTCT---TTTTATCACCAAGAAAAGGGACATAGC----------------TTGGTCTTA--------TAGGATGT-AGAAAGAAAATGGATA s canFam1.chr9 14335965 151 + 53642819 AAGAATTGCTGTTAGACAAGctgtcattcactaggtgtatgacttta-aatca-ttatttattatcctta--ctctcagttttgtcttctgagaattaggtgtattaatagtc---------ctgatcttatagggttataagaaataaagaagaaaatgtgca a score=67874.0 s hg17.chr17_random 2548603 193 + 2618010 at--aatacttagcaccatgcctgacacatggtatacat--ccaatCCATGAAAAGTGTTAGCAGAGGATTAG-------TGTTCCCATTACCTTAAAAACAAAAATATTAATTTTATTGTGGAAACTGCTGTACCACCCAGATGGTGGTCCCTAA-AAACTGAATGATGTGATAAGAAATCTCTGGTA-ACTCCCACTT--CTCTAT s panTro1.chr19 42817030 193 - 82489036 at--aatacttagcaccatgcctgacacatggtatacat--ccaatCCATGAAAAGTGTTAGCAGAGGATTAG-------TGTTCCCATTACCTTAAAAACAAAAATATTAATTTTATTGTGGAAACTGCTGTACCACCCAGATGGTGGTCCCTAA-TAACTGAATAATGTGATAAGAAATCTCCGGTA-ACACCCTCTT--CTCTAT s mm5.chr11 22409201 176 - 121648857 TTA-AATACTTAGTATTATGCCTGAGACAACAAATACAT--------------AAGTTTTAGTGGAGGATCAG-------TGTTGCAGTTATCTTAAACATATGAATATAAACCATA-----AGAACTGAT-TGCCACCTAGAAAATGGTTCTCCC-AAACTGAACAATGTGATGAGAAATCCTAGGTT-ATGTTTTCCT--ATCCAT s rn3.chr10 22202778 185 - 110733352 TTT-AATACTTAGTATTATGCCTGGGACAGTGAAT-------CAATAAGTGCTAGGCTTTAGTGGAGGATTGG-------TGTGACAGTTAATTTAAACATACGAACATAAACTGTA-----AGAACTGAT-TGCCACCTAGAAAGTGGTTCCCCC-AAACTGAACAATGTGATGAGAAATCCCAGTTC-ATGTTTTCCTACCCCCAT s canFam1.chr9 14336717 197 + 53642819 --aaaatactcagcactatgcttagcacttggtatatgtattcaataaatgctacctattaGCAGAGGATAAGATGACCATATTCTAGTCATCTTAAAAACACAAATG--AGTTTTATTGTGGAAACTGATGTGCCACC-----AGTGGTCCCCAAGAAATTGCATAGCGTGATGAGAAATCCCAGATATATCCCTTCTT--CTCTAA a score=-604.0 s hg17.chr17_random 2548796 4 + 2618010 TCCC s canFam1.chr9 14336914 1 + 53642819 G--- a score=111.0 s hg17.chr17_random 2548796 2 + 2618010 TC s panTro1.chr19 42817223 2 - 82489036 TC s mm5.chr11 22409795 2 - 121648857 AC s rn3.chr10 22202982 2 - 110733352 TT a score=1200.0 s hg17.chr17_random 2548798 2 + 2618010 CC s panTro1.chr19 42817225 2 - 82489036 CC s mm5.chr11 22409797 2 - 121648857 CC s rn3.chr10 22203384 2 - 110733352 CC a score=93982.0 s hg17.chr17_random 2548800 294 + 2618010 ACAAAACTATG--ATATCTTCTAAGACACTCCTCACTCCCCTAGAACACCCAAATAGTTTCCTAATTATTGTCCTTGTCTTCAAGTTTCCTCCTTTCTACAGCATAGTCTTTTGATTAAGAAAATAG-CTCTAAACTCAA--CTCCCCTTGTGGTCCCAAGACCTTCAATGACCTGGCCTCATCCTTCCTACCAATCTTACACTCAACTAATCTTGAGGGTCTTCTGCACTGTAGTCAG-ACAATACCCCT----------------------------AAAGCAAGAGGGaat-----------------------ctggcacagtgattaagaccatggagtctgaagc s panTro1.chr19 42817227 294 - 82489036 ACAAAACTATG--ATATCTTCTAAGACACTCCTCACTCCCCTAGAACACCCAAATAGTTTCCTAATTATTGTCCTTGTCTTCAAGTTTCCTCCTTTCTACAGCATAGTCTTTTGATTAAGAAAATAG-CTCTAATCTCAA--CTCCCCTTGTGGTCCCAAGACCTTCAATGACCTGGCCTCATCCTTCCTACCAATCTTACACTCAACTAATCTTGAGGGTCTTCTGCACTGTAGTCAG-ACAATACCCCT----------------------------AAAGCAAGAGGGAAT-----------------------CTGGCACAGTGATTAAGACCATGGAGTCTGAAGC s mm5.chr11 22409799 281 - 121648857 ATACAACTATGCCATACCTCC-------CTGCTCACACCCCTCCATGTCACCAACATCAACCCAGTCACTTCCCCTACCTTCAAATCATCTTGTTTGTATAGCATAGAATTTTGATTAAGAAACTAGTCTGTAAAGTCAAC-CTTCTCTTACGGCCCCAGGACTTTGGACAACCTGGACTAACATTTCCTATC-----TACATTTG---CATATTGAAAGCCTTCCTCTTTCTGGTAGGAACACCACCCCC----------------------------ACAGCAGGAGGACAT--------------------------GTAAAGTAGTGAAGAACATGGAATGTGGAAA s rn3.chr10 22203386 280 - 110733352 ATCCAACTATGCCATACCTCC-------CTGCTCACAACCCTTCAATACACAAACATCTCCCCAGTTACTCCCCCTACCTTCAAATCATCTTGTTTGTATAACATAGTATTTTAATTATAAAACTAGTCTGTAAAGTCAAC-CTTCTCTTACAGCCCCGGGACTTTTGACTACCTGGACTCACATTTCCTACC-----TACCTTTG---CACAGTGAAAGCCTTCTTCATTTTGGTAGGAACAGCACCTCC-----------------------------CAGCAGGAGGACGT--------------------------GTGAGGTAGTAAAGAACATGGAACATGGAAA s canFam1.chr9 14336915 308 + 53642819 ACAGAAATC----ATACCCTC-------CTCAACACCCCCC------------ATAG------AACCACTGTCCCTGCCTTCAAATTATTTCCTTTCTACTGC-TAGCATTTTAGTTAAGAAAACAGGCTCTAAAATCAGCTCCCCTTTTATGGTCTCAAGACTTTCAATAACCTGATCCTACCCTT-CTACC------------AACTCATCTTGAGGGTTGTTTTCACTCTAGTCAGAACAGTCCCTCCACCACCATCCCCACCACCACCCTGATACCAAGTAAAAGGGCATAGTATGGCATAAAAGGGCatagtatggcatagtggttgagagtgcagaatctggagc a score=8197.0 s hg17.chr17_random 2549094 26 + 2618010 catactgcttggcttcaaatgccagc s mm5.chr11 22410080 25 - 121648857 CACACAG-TTGACTTCAAATGCCAGC s rn3.chr10 22203666 25 - 110733352 GACACAG-TTAACTTCAAACACCAGC s canFam1.chr9 14337223 26 + 53642819 cagactgcttggcttcaaatgctagc a score=23525.0 s hg17.chr17_random 2549120 590 + 2618010 t-----actcacccactagctacttagcctctctatgctgcaggttcctcgtctgtcaaagggcaaggataatatcattgcatacatcatcataaggttgttgtaagaactgtatgaaataatgcatgcaaagcactcagcacattacctaatacttagtaagtgGCAATGATAACCATGATGAGCCTTCCCTCAAAAACTACAGTATCCTTCCAAAA-----TCTAGTCATGTCACATGCCTGTTCAGCAACCTTTACATAATGCCTATTGCCTACAAGATAAAGTTCAAAATCCTAAGTGTAGGATACTAAGCACAGTACAAATTCTTCATACTGTGGCACTAACCCACCTTTCCGTCTTCAT-TCCAAC----------------------------AGATTCAGAACctatg-------cttcaaccaggcaacactttttgtcataccatgggggccctgtggcattttgtttcaatg--------gctgaaatctccttcctatttatttctatctgctcagctccttttcacccttcaagatccaaacagatgttctctttttgtgaagggcttcctaagttttctaggagaagtctgtggcttctacctctaaattctcatatcataacctggaaa s canFam1.chr9 14337249 622 + 53642819 tccataacttactcatttactagttagtttgtctatgccccaggttcctcatctgtaaaatggcaaggatagcaacattgcgtacatcat---aagcttgtggtaagaactatgt-----aacacacataaagcactcagcacaaggcctaatatttagtaagTAATGATG-----CA-GCTGAGCCTTTACTCAAAAACTa-gttgtctttctaaaaacaaatccaatcatgtcccatatctgttcaa-aacctttcattaatgttccttgccaagaggatgaagttcaaagtcctgagtgtagcatactaggcacagtgcaaattcttcctactgtgtcactcacccac-tttccaactccatctcccactgttctccACAGCCTCCCCAAGTAAGGGAAATCCAGAATCCATGTTTTGTGCTTCTCCCAAGCAATGCTTTT-GTCATCCCATGAACGTACTGTGGCATTTTGTTTCCctgcttcacctgttgaaattctctgactattcctttctacctgctaagctcctaatcatggttctctacctacacaactgctaccttctcatgaagtacttcccgaaccttccaggtaaagtctgtggtacctacttctaagctccca----atcatctagaaa a score=45700.0 s hg17.chr17_random 2549710 274 + 2618010 atctaaatgtacaatcctttgttattgtttgctggtttacttctctgtgtctgtcttcttctctatgacccctgtaagggcaggagcctat----tgcgactttttgcatgatgcccaacatacaacaggtgttcaatcaatgAGCATTTTATATGTAAATTCTAATTTTGATATGTAAATATCTAAG--AGAGATGT------------AAATTCTAGCATAGGAATCCAAAACTGCAAAATCATTCCAATAA----GAAAATGGCTAAAAAGAAAGCAGTTTCATGCTAAGCAT s panTro1.chr19 42818137 274 - 82489036 ATCTAAATGTACAATCCTTTGTTATTGTTTGCTGGTTTACTTCTCTGTGTCTGTCTTCTTCTCTATGACCCCTGTAAGGGCAGGAGCCTAT----TGCGACTTTTTGCATGATGCCCAACATACAACAGGCGTTCAATCAATGAGCATTTTATATGTAAATTCTAATTTTGATATGTAAATATCTAAG--AGAGATGT------------AAATTCTAGCATAGGAATCCAAAACTGCAAAATCATTCCAATAA----GAAAATGGCTAAAAAGAAAGCAGTTTCATGCTAAGCAT s canFam1.chr9 14337871 275 + 53642819 acctgaatgtacaaccctgtgttgtcatttgccagttcacgtctctgtgtc-----tcttctctacaacctcctcaaggtcaggcacctctttgcttcttttttttgtgtaatgtctgacttatagcaggtgttccatgaatgAGGTTTTGA---------------CTGGACTAAGAGATATCTATGGAAGGAATGTGGACAACAAGCAAAATTTTAGCAGAGGAA-CCAAAACCACAAAATCATTCTAGTAGTGGCTAAAATGGCTAAAATGAAAGCAATTTCATGTTAAGCAT a score=47629.0 s hg17.chr17_random 2549984 267 + 2618010 TTTTTTAATCCAACATCTTGTTGATTTGCATCTCATTTGGCTTCTGATTCCTCTGCATTGTGCAATTTTCTAC------TTTAGAACTTGAGCCATCTTATCTGAAAAAATGGGTCAAGAAAATATGTACATGTTTTTAAGCCTTTCTAAGTAAGCCATTTCTAAAGGTTTTACCAGTTTAGTATTTTTCATATTCTAAAGTAATTCTAAATCATCATACTAAATTTTCTACCTTTATCTACTTTTAAAACTTTATTTTTAGAGTTTTAGTGG s panTro1.chr19 42818411 267 - 82489036 TTTTTAAACCCAACATCTTGTTGATTTGCATCTCATTTGGCTTCTGATTCCTCTGCATTGTGCAATTTTCTAC------TTTAGAACTTGAGCCATCTTATCTGAAAAAATGGGTCAAGAAAATATGTACATGTTTTTAAGCCTTTCTAAGTAAGCCATTTCTAAAGGTTTTACCAGTTTAGTATTTTTCATATTCTAAAGTAATTCTAAATCATCATACTAAATTTTCTACCTTTATCTACTTTTAAAACTTTATTTTTAGAGTTTTAGTGG s canFam1.chr9 14338258 254 + 53642819 CCTTTCGATCCATCTTCTTG-TGAT----------TTTGGCTTCTGATTCCTTTTTGTTGCATAATTTTCTACTTATTTTTTAAAGCCTAAGCCATTTTACATG--AAAATGGGTCAAGGAAACATAT-----TCTTTAAGATGTTCAAAGTAAAATATTTCTAAA-GTTCTACTAGTTTAATGTTTTTCCTACTCTAAAGCAATTCTAAAACATCATAGTAAGTTTTACATCTTTATGTATTTAAATAATTCTATCATTAGGGTTTTAGTAG a score=25674.0 s hg17.chr17_random 2550251 281 + 2618010 TTTAGATGAAACTCGGAAATGTCTCTATTCTGGACCACAGAGCCTGGAAGTAAGAcaggggtgttcaatgttttggcttccctgggccacattgaaagaagaattgtcttgggccacacataaaatacactaacactaatgacagctgatgagcaaaaaaagaaaaaaaa-tcacaaaaaaa-tctcataatgttttaagaaagtttatgaatttgtgttgtgctgcattcaatgcctttctgggccacaggttgaacaagcttgCTGTAAGATGTTGCTAAA s panTro1.chr19 42818678 283 - 82489036 TTTAGATGAAACTCGGAAATGTCTCTATTCTGGACCACAGAGCCTGGAAGTAAGAcaggggtgttcaatgttttggcttccctgggccacattgaaagaagaattgtcttgggccacacataaaatacactaacactaatgacagctgatgagcaaaaaaagaaaaaaaaatcacaaaaaaaatctcataatgttttaagaaagtttatgaatttgtgttgtgctgcattcaatgcctttctgggccacaggttgaacaagcttgCTGTAAGATGTTGCTAAA a score=2305.0 s hg17.chr17_random 2550532 11 + 2618010 TCTCCCCAAGT s panTro1.chr19 42818961 11 - 82489036 TCTCCCCAAGT s canFam1.chr9 14338729 11 + 53642819 TCTCCCCACCT a score=837700.0 s hg17.chr17_random 2550543 1644 + 2618010 ATGTTTCATAAAGCACTGACCTATAGAGCTAATCTCTGA----AAACAAACAAAAAGCAGt-ccatggtcaagtaagtttggagaaaaatatatgctatatctctgtattgaaaagtcatagagcattttagcacattaaaggctccgagaggcccaacaatgaagaattcagcatttcccaaacttacttaccagaaaacACTTTCAAGTCCCTTGGAACCAGTGTTCATGGAACTCAGTCTGGTAAATACTGCATCATTTAGCTTCTGAATGGCCCAATACAACCAGCCTTT-TGGTTATAAATAATCTCCATTTATAACACAGTTGGATGGAGCTTA-AAGGACACCCATCTTTGTCACCCATGAAGGTCTTCATTCCCACCTGCATGTTCTTACCAAGTTATTGTTCAGAGCATATTTGAAAGGAATGCAGAACAAACGATTTGTTatagctctgtttgaaagtgcctctttacacaaaaccaaaatctatttctctatagattctatccattcatcttc-attcagtttattggagccacaaataataaatctaaAATGTTATATCACTTTTTCAGCCTGAGGGCCTAAAGGATCACATAG-AACCTGTAGTCACTGGTAGAACAGCAA-ACAAAAAGCTTACTTGTCCTCTTCATCTGAAAAGTAAACAAAAGAA-GTGGGAAACGTTTGCAGATGCCTGGCATACCGAGCCATTATTAGTGAGGGTATAATGATTAGAAGATAATGGCCCGGTACCTTTGAAGACTGGA---ATGAAGATTTCTGTGTAGTGACACACTGG-CAATGTGAATAGTCCTAATTTGACAACAAAACAACCTAAATCTCTTTTATGAGGTGAGCAGTGTATCTTAGGTAATAAACACTTAAGTAATTAGGCAT-TTTTTATGGAAATAACTATAAACTGAAACATGGGGGAAAAACCCTCAGTAATAGGCTGACGCCCAGGGAGATGGGTATATAAGAGCCAGAGCAGAAGAGAGGAGCATCGAGACACCAACAGACTTCT---CTCAACTCAACAAAAACCCACCTCCCATTGCCATGTATTGCTGTGCTCTCCGCTCCTGCAGCGTCCCCACCGGCCCTGCCACCACCTTCTGCTCATTTGATAAAAGCTGCCGCTGTGGAGTCTGCCTACCCAGCACCTGCCCACATGAGATCAGCCTCCTTCAGCCCATCTGCTGTGACACCTGCCCCCCACCCTGCTGCAAGCCTGATACCTATGTGCCAACTTGCTGGCTGCTCAACAACTGTCACCCGACTCCCGGACTGAGTGGGATCAACCTGACCACCTATGTTCAGCCTGGCTGTGAGAGTCCCTGTGAGCCCCGCTGTTAACCAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCTTCAGCACTCACTACTGCCTACATCAAG---GCTAAGGCCATCCCAATCCCCGGGGCC--AAGTCTTGATGAAT--------CTTCTTAATTATTTGCACATTTGGGTACCATTGGAGACCTCCCTTCTGTCTTTTAGGCT--ATTTCATCACTCTTTGAGAAATAACCATTTTGACCATTTGTTAATAAACTTTATTCTGGCTTAGCAAATATGACCTTGTGATTATTTATTTTCATGTCTCCCATTAG s panTro1.chr19 42818972 1647 - 82489036 ATGTTTCATAAAGCGCTGACCTATAGAGCTAATCTCTGA----AAACAAACAAAAAGCAGt-ccatggtcaagtaagtttggagaaaaatatatgctatatctctgtattgaaaagtcatagagcattttagcacattaaaggctccgagaggcccaacaatgaagaactcagcatttcccaaacttacttaccagaaaacACTTTCAAGTCCCTTGGAACCAGTGTTCATGGAACTCAGTCTGGTAAATACTGCACCATTTAGCTTCTGAATGGCCCAATACAACCAGCCTTT-TGGTTATAAATAATCTCCATTTATAACACAGTTGGATGGAGCTTA-AAGGACGCCCATCTTTGTCACCCATGCAGGTCTTCATTCCCACCTGCATGTTCTTACCAAATTATCGTTCAGAGCATATTTGAAAGGAATGCAGAACAAACAATTTGTTatagctctgttagaaagtgcctctttacacaaaaccaaaatctatttctctatagattctatccattcatcttc-attcagtttattggagccacaaataataaatctaaAATGTTATATCACTTTTTCAGCCTGAGGGCCTAAAGGATCACATAG-AACCTTTGGTCACTGGTAGAACAGCAA-ACAAAAAGCTTACTTGTCCTCTTCATCTGAAAAGTAAACAAAAGAA-GTGGGAAAGGTTTGCAGATGCCTGGCATACCGAGCCATTATTAGTGAGGGTATAATGATTAGAAGATAATGGCCCGGTACCTTTGAAGACTGGA---ATGAAGATTTCTGTGTAGTGACACACTGG-CAATGTGAATAGTCCTAATTTGACAACAAAACAACCTAAATCTCTTTTATGAGGTGAGCAGTGTATCTTAGGTAATAAACACTTAAGTAATTAGGCAG-TTTTTATGGAAATAACTATAAACTGAAACATGGGGGAAAAACCCTCAGTAATAGGCTGACGCCCAGGGAGATGGGTATATAAGAGCCAGGGCAGAAGAGAGGAGCATCGAGACACCAACAGACTTCTTCTCTCAACTCAACAAAAACCCACCTCCCATTGTCATGGATTGCTGTGCTCTCCGCTCCTGCAGCGTCCCCACTGGCCCTGCCACCACCTTCTGCTCATTTGATAAAAGCTGCCGCTGTGGAGTCTGCCTACCCAGCACCTGCCCACATGAGATCAGCCTCCTTCAGCCCATCTGCTGTGACACCTGCCCCCCACCCTGCTGCAAGCCTGATACCTATGTGCCAACTTGCTGGCTGCTCAACAACTGTCACCCGACTCCCGGACTGAGTGGGATCAACCTGACCACCTATGTTCAGCCTGGCTGTGAGAGTCCCTGTGAGCCCTGCTGTTAACCAGCCGAGTCTGCACAGGTTCCGTGAGGTGGCTGCCCAATGTCCTCTGCACCATCTGGGCTTCAGCACTCACTACTGCCTACATCAAG---GCTAAGGCCATCCCAATCCCCGGGGCC--AAGTCTTGATGAAT--------CTTCTTAATTCTTTGCACCTTTGGGTACAGTTGGAGACCTCCTTTCTGTCTTTTAGGCT--ATTTCATCACTCTTTGAGAAATAACCATTTTGACTATTTGTTAATAAACTTTATTCTGGCTTAGCAAATATGACCTTGTGATAATTTATTTTCATGTTTCCCATTAG s mm5.chr11 22410105 1644 - 121648857 ATGCTCCAGAAAAGACTGACCTATCAAGCAAATCTATGAAGATAAACAAACTAAACGTAGTGGTATGGTCAAGGAGGTTT-GAGGGAGATATACGTTATATCACCTTAATGAAAACATCCAGAGACTCTTAGCATGTTGGAGGCTCTGAGAAACCCTCCAGTCGGGAAGTCAGTATTCCCCCATGTTACCT-CGAGAGTCTCATTTTGTGTCTCCTAGAGCAGCGGTTCGAGAACCTCAGTTTAG-AAACACTCTACCCTTTCATTCTTAAGT--CCTAACACAACTCATCTTT-GAGTGATAAATAATCTAAGTGCATGGTGCAATCAGACGAAGTTCT-AAGGGCACTGGACCTTGTCACCCATAGAGCTCTTGATGGCCATCCACGTGCCCCTCCAGAGTCATCATTCAAACCATGTACAAAGGGAAAGAAAATGAGAGATTTTTCTAGAATTCTATAGAAAAGTACTTCTTTGCCCATTGCCCAACCTGCTCTCTCTA---ATTCTACTC---CTTTTCA-AGTCAACGCCTTGGCACTACCAGACATAAATCTAATTTTTTTTCTCACTTTTT-AGTCAGAGAGTCTATATTATCTCATAGAAAACCATGGTTGCTGGAAGAAGAGAAATGCAAAATGCCTA--TGGAGTCTTTGTCTGTAAAGTAGACACGGAGC-ACAGGGAAGAGCTGC-GATACCTGCCATTCCAAGCCACTATTAGTGA-TGTGGAATGATTAGAAGATAATGGCTCAGAGCCTTTGAAGACCAAAATGATGAAGCTCTCTGTGCAATGACA-ACTGACCAATGTGAAGAGTCCTTACTTGACGACAAAACAACCTGAATCCCTTTTATGAGGTAAAGAATGTGTCTTAGGTAATAAACACTTAAGTAATTAGAAGG-ATTTTATGGAAGCAGCCATAAACTGAAACATGGGGAAAATATCTTGA-CCATAGGTTGACGCCCAGGGAGGCGGGTATATAAAAGCCAGGGCAGACGACA-GAGCATTCAGACATCAACTGACTTCTCCTCTCAACCTTACCACAACCCAACTCCCAAAGCCATGGCTTGCTGTGTCGCCCGCTGCTGCAGTGTCCCCACCGGCCCTGCCACCACCATCTGCTCCTCAGACAAGTCCTGCCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACATGAGATCAGCCTCCTGCAGCCCACTTGCTGTGACCCCTGCCCCCCACCCTGCTGCCAGCCTGAAGTGTACGTGCCAACCTGCTGGCTGCTCAACTCTTGCCACCCAACTCCCGGCCTGAGTGGCATCAACCTGACCACCTACGTGCAGCCCGGCTGTGAGAGTCCCTGTGAGCCCTGCTGTTAAGCAGTCAAGTCTTCCCAGGTTCAGTGGCCTGTCTGCTCAGCATCCTCTCTTTCACCTGCCCTTCAATAACTGCTTCTGCTTGCATCAAA---GCTCAATCAACCCCAATGCCCAGAAAC--AGGGGCCCATGGACATGTTTAAATTCTTAATGCTTTATTCCTTTGGGAACAGATGAA----TGATGTCTCTCTTTTAAGCTC-ATTCCTGCTTTTTTTGAGAGATAACCATTTGGACTACTTATTAATAAACTTCATTCTGGCTTAGCATCCATGGCCTCGTAGCTGTTTATGTCTGTGTTTCCTCTTAG s rn3.chr10 22203691 1576 - 110733352 GTGTTCCAAAGAATGCTGACCTATCGAGCTAATTTATGAAAATAAGCAAACTAAACGTGGT---ATAGTCAAGGAGGTTT-GAGGGAGATACATGTTATGTTATCTTACTGAAAGCACCCAGAGCCTCTTAGCATATTGGAGGCTCTGAGAAACCCTCTAGTGGGGAAGACAGTATTCCCCGCATTTCCT--CAACAGTCTCCTTTGGTGACCCCTGGAGCAGTGGTTTGAGGACATCAGTTTAG-GAACACTGTACACTTTCATCCTTAAGG--TCCAACACAAGTCATCTTT-GAGTGATAAATAATCTAAGTGCATAGCACAGTCAGATGAGGTTAT-AAGGGCACTGATCCTCATCACCCATACAGCTCTTGATGGCCACCAACATGCCCCTCTGGAATCATC------------------------------------------TAGAATCCTATAGGAAAGTACTTATTTCCCCATTGCCTGACCTG--CTCTTTATAGACTCCATCTACTCCTTTCCAAGTCAATGCCTTGG----------CATAAATCTTATTTTTTCTCTCACTTTTACAGTCAGAGAGTCTGAACTATCTCATGGAAAACTGTGGTTGCTAGAAAAAGAGAAATCCACAACGCCTA--CACGCTCTTCATCTGTCACGTAGACACGGAGC-ACGGGAAAGAGCTGTGGATACCTGCCATTCCAAGCCACTATTAGTGA-TGTGTGATGATTAGAAGATAATGGCTCAGAGCCTTTGAAGGCAGAAATGATGAA---------GCAATGACA-ACTGGCCAATGTGAAGAGTCCTTATTTGACAACAAAACAACCTGAATCCCTTTTATGAGGTAAGGAATGTGTCTTAGGTAATAAACACTTAAGTAATTAGATGGATTTTTATGGAAGCAGCCATAAACTGAAACATGGGGGAAATATCTTGG-CCATAGGTTGACGCCCAGGGAGGCAGGTATATAAGAACCAGGGCAGACGACA-GAGCATTCAGACATCAACTGACTTCTCCTCTCAACACTACCACAACCCAACTCCCAAAGCCATGGCTTGCTGTGTTGCCCGATGCTGCAGTGTCCCCACTGGCCCTGCCACCACCATCTGTTCCTCTGACAAGTCCTGCCGCTGTGGAGTCTGCCTGCCCAGCACTTGCCCACATGAGATCAGCCTCCTGCAGCCCACTTGCTGTGACCCCTGCCCCCCACCCTGCTGCCAACCTGAAGTGTACGTGCCAACCTGCTGGCTGCTCAACTCTTGCCACCCAACTCCCGGCCTGAGTGGCATCAACCTTACCACCTATGTGCAGCCTGGCTGTGAGAATCCCTGTGAGCCCTGCTGTTAAGCAGTCAAGTCTTC-----TTCCCAG--------GCTCAGCACCCTCTCCATCACCTGCCCTGCAGCA---ACTTCTGCCTGCATCAAGTCTGCTTAATCAACCCCAAGGCCCAGGACCAGAGGGGTCCATGGACATGCTTCAATTCTTAATGCTTCGTTCCTCTGGGAACAGATGGA----TACCTTCTCTCTTCTAGGCTCTATTCCTGC-TTCTTTGAGAGATAACCATTTGGACTACTCATTAATAAACTTTATTCTGGCTTAGCAACCATGGCCTCGTAGCTGTTTGTGTCTGTGTTTCCTCTTAG s canFam1.chr9 14338740 1621 + 53642819 GTGCTCTATAGAACACTAATCTATGAAGCTAACCTATGGAAACTAACAAACAAAATG-Att-ccatggccaagtaattttggagaaaaatacctgttatatctcttaattggaaagtcagagagcattttagcatattaaaggctctgaaaggtccaccaatgaagaactc--tatttCTCAAATGTATTTACCAGATAACCTTTTAATGTTCCATCAAACAGGTGTTCATGGAACTCATTTTAGGAAATATTGCAGAGTTTAGTCTCTAAATGGCCCCACAAAACTGTTTTCTGGGGTCATCAACAATCTTAATCTATAACATCGTTGGTCTGAGTTTTGAATGGCATCTGCCACTGTCA-CTGTACAATTCCTGACTCCCATCTACCTGTCCCTGACAAGTTATTGTTTACTGTATGCATGGAGGGAACGGAAAGTAAATGATTTT-TACA----TCTAagaaagtgtttctttacactggatcagaatctccttctctatagatcccatccattcatctta-attcagcttcttagggccatgaaaaataaatctaaGACTTT-TAGCACTTTTTCAGCCAGAAGACCTAAATTATCACATAG-AATCTTTGGTTGCTGTTAGAATAGCAA-TCAAAAAGCCTACTTAT-CTCTTCATCTGAAAAGCAGGCAAAGAAATGTGGAGATGATTTGCAGATACCTGGCATACCAGGCCATCACTAACGA-TGTATAATGATTAGAGAATAATGACTCGGTGCCTTTGAAGACTGAA---ATGAA-ATGTCCTTGAGGTGACA-AAGAGCCAACATGAAGAGTCCTAATTTGACAACAAAACAACCTAAACCCCTTTTATGAGGTAAAGAGTGTGTCCCAGGTAATAAACACTTAAGTAATTAGCTGG-TTTTAATGGAGATAGCTATAAACTGAAACACAAGGAAAAAAGTCTTGGTAATAGGCTGACACCCAGGGAGGTGGGTATATAAGAGCCAGGGCAGAAGAGAGAAGCATTGAGACACCAACAGACTCCTCTTCTCAACCCAACGAAAACCCAACTCCTGACATCATGGCTTTCTGTGTTCCCTGCTGCTGCAGCGTCCCCACCGGCCCTGCCACCACCATCTGTTCCTCTGACAAATGCTGTCGGTGCGGAGTCTGCCTGCCCAGCACCTGCCCCCATGACATCAGCCTCCTTCAGCCCACCTGCTGCGACACCTGCCCTCCACCCTGCTGTGAGCCTGACACCTATGTGCCAACTTGCTGGCTGCTCAATTCTTCCCACCCAACTCCTGGACTGAGTGGGATCAACCTGACCACCTATGTTCAGTCTGGCTGTCAGAATCCCTGTGAGCCCTGC---TAAGCAGCCA----TGCACAGGT---GTGGGATG-CTGCTCA------------CCATCTGGCCTTCAACACCCACTACTACCTGTCTCAG----GCTCAATCAATCCCAAGCCCCTGGGCC--ATGTTTTCATGAATTCACCCAACTTCTC----CTCTCCTCTTTTGAGTGGAGTTGGAGACCTTCTTTCTGTCTTTTAGGCC--ATTTTACTGCTCTTTGAGATATAACCATTTTGACTATTCCTTAATAAACTTTATTCTGGCTTAGCAAATTTGGCCTTGTGATGATTTGTTCTCATGTTTCTTCTTGG a score=27818.0 s hg17.chr17_random 2552187 82 + 2618010 GGAAAGTGGAATGCCTACCTAAACCTGAACAGTAGGTTATCACACTATCCAAGATTTA-CCCCAACAGAATAAGAGCTCTCAT s panTro1.chr19 42820724 80 - 82489036 GGAAAGTGGAATGCCTACCTAA-CCTGAACAGTTGCTT-TCACACTATCCAAGATTTA-CCCCAACAGAATAAGAGCTCTCAT s mm5.chr11 22411749 81 - 121648857 GGAAAGGGGAATGCCTAGCTCT-GGTTGACAGCAGGTTCTTATACAACCCAATGTCCA-TCCCAGCACAGTGAGAAGTCTTAT s rn3.chr10 22205267 69 - 110733352 GAAAAGCAGAATGCCTGTCTCT-GGTTGACAGCAGGTTCTTAC------------CCA-TCCCAGCACAGTGAGAAGCCTCAT s canFam1.chr9 14340361 80 + 53642819 CGAAAGTGGAATGCCTATCTAAACCTGAATAGCAGGTCATCAT---ATCTAAGATTTATCCCCAGCAGAAGGAGCACATTTGT a score=18677.0 s hg17.chr17_random 2552269 156 + 2618010 AGTGGAATTTATCGAAAAAATAGATACTGGTTATTTGTGATAAGTTAAAAAGTAAAAAATGTGGTAG---TTCATTTTATAGAAGCTTTTTATTTAACAGATatttatttaatagatattattggaagacatccactgtg-caagcactatgctagagtc s panTro1.chr19 42820804 155 - 82489036 AGTGGAATTTATCGAAAAAATAGATACTGGTTATTTGTGATAGGTTAAAAAGTAAAAAATGTGGTAG---TTCATTTTATAGAAG-TTTTTATTTAACAGATATTTATTTAATAGATATTATTGGAAGACATCCACTGTG-CAAGCACTATGCTAGAGTC s mm5.chr11 22411830 133 - 121648857 -GTG--------CGAACA-----------GTTCCCTCTTTGGAGTGGGAAAATAGTAGATGTGTAAAAGCTTTAGCATTTAGAACTAGCTTGCCTGGAAAAGCTTAAATGTGTAAATA--AATAGAAATTACATA----G-CATGAAACATAGAGGAATC s canFam1.chr9 14340441 141 + 53642819 GGTGGAA-TCACTGAAAAATTACATACTAGCTCTTTGTGATGGGTTGAAAACTAAAAAATTCACTAT---GCCATTTTGTAGAATCTTtttactca---------------ataggtattttttgaagacaactactatgccaagccctttgctggaacc a score=74284.0 s hg17.chr17_random 2552425 330 + 2618010 tagagattaacagAATGT--TTTAAAAATACTTGATTTTA---------------------GTTTCCATTGATTCTGACATTGATTTTTCTTTCTTCCTTAATTGACTAAATGAATTGA--TCACTGTGCTGGTGTGTATAAATAATTTG-ATTATCCTAG---TCCTCACAGTCATCTGAAATTCTGAGCTCAAAATGCAAA-GCAA----------TTTTGAGAAGTGTATATATCCATTTCTTCATATATGCTGTCTTCCAAAACAATCCATTTTTAATTAATGTTAGCATTTATCGAGTATTCATTGATTCCTCAAATGGGGCTTACATTGGTTTACAT--TAGTCATGACTATGATTAGAAGTTTGC s panTro1.chr19 42820959 330 - 82489036 TAGAGATTAACAGAATGT--TTTAAAAATACTTGATTTTA---------------------GTTTCCATTGATTCTGACATTGATTTTTCTTTCTTCCTTAATTGACTAAATGAATTGA--TCACTGTGCTGGTGTGTATAAATAATTTG-ATTATCCTAG---TCCTCACAGTCATCTGAAATTCTGAGCTCAAAATGCAAA-GCAA----------TTTTGAGAAGTGTATATATCCATTTCTTCATATATGCTGTCTTCCAAAACAATCCATTTTTAATTAATGTTAGCATTTATCGAGTATTCATTGATTCCTCAAATGGGGCTTACATTGGTTTACAT--TAGTCATGACTATGATTAGAAGTTTGC s mm5.chr11 22411963 346 - 121648857 -AGAGACCAAAGGCATTTAAGTCAATAATACTGGAGATCAAG--ACACCTGACATGAAATTGCTTTCATT--TTTAGTTTTTTCTTTTCTTTTCTTTCCCATGGTGTCTTATGATTTGAACTCCCTTGGCTG-----------TAATTTACATCAGCCAAA---CACTCATTGC--TCTGGTATTTATTGCAAAAAGAGACAA-GCAAGAATTCCCATCCTTGAAGGGTCCTAGAGAAGAGGTTTGGATGGATGCTGTCTTGCTGAATAATTGGTTTTATGTAAATATCAGCATTATTTG----TTGTTTGCTCCCTCCAGGGAGGGCTCTGTGAGTTTACAGAAGAGCCCCAACTATTCTTAGAAGTTGAT s rn3.chr10 22205473 336 - 110733352 TGGAGACCAAAGGCAAATAAGTCAATAATACTGTAGATCACGACA--CCTGACATGAAACTGCTTTCATT--TTTAGGTA-------TCTTTTTTTTACCATCATGTCTTATGATTTGAGCTCCCTGGGCTA-----------TAATTTACATCAGCCAAA---CACTCACTGC--TCTGGTATTTATTGCAAAAAGAGAGAA-GGAAGAATTCCTACCTTTGAAGGGTCCTAGAGAAGAGGTTTGGATAGATGCTGTCTTGGTGAATAATTGGTTTTATGGAAATATCAGCAT--ATTG----TTTCTTGCTCCCTCCAGTGAGGGCTC--TGAGTTTACATAATAACCCCAACTATTCTTAGAAGTTGAT s canFam1.chr9 14340582 325 + 53642819 tggagaTTAATATAATGT--TTTTTAAATGTTTTACTTAA-------TTTA----------ATTTCCATTGTCCCTGAAATTGATTTTTCTTTCTTCCTTACCTGGCTAAACAAATTGA--TCACTTTGCTGTCATGTAGAAACAATTTTGATTGCTTTAGTTATAATCATTGG----TGAAATTCCAAGCTCAAAATGCAAACGTAA----------TTTGGGGAAGAACATATACCCATTACTTGATATATGCTGTCT---AGAAAAGTCAATTCCGAAAAAATATTCATATTTATTGGCTATTCCTTGCACCCTCAAATGAGGC-----TTGTTTTAC----TTGTAAGAATTATCTTTAGAAGTTTAC a score=74659.0 s hg17.chr17_random 2552755 282 + 2618010 TAGTCTAAGTG----ACATATAATATCATGACATTGAAATATGCTTAAAATATCAGACTACAGTGTAGTATTTTCTATACACCAGAAATAGTCACACAATTCTGAGAGCAAAAACACACA--------GTTTCTATTAG-----AACAAAACTACTACGATAACCACTAATTCATGTCCTTATTTATCTTAGAAAAATCTAGGTGCAATTAGGTCTTTGCAAAAAATAAAGGTATTGTGATtatatatatatatatatatat------aCACACACACACACTTTTGGACTTGCCTTTGGCCTTT s panTro1.chr19 42821289 296 - 82489036 TAGTCTAAGTG----ACATATAATATCATGACATTGAAATATGCTTAAAATATCAGACCACAGTGTAGTATTTTCTATACACCAGAAATAGTCACACAATTCTGAGAGCAAAAACACACAGTTTCTATGTTTCTATTAG-----AACAAAACTACTATGATAACCACTAATTCATGTCCTTATTTATCTTAGAAAAATCTAGGTGCAATTAGGTCTTTGCAAAAAATAAAGGTATCGTGATtatatatatatatatatatatacacacacacacacacacacTTTTGGACTTGCCTTTGGCCTTT s mm5.chr11 22412309 286 - 121648857 TGGTTCAAGCA---TATGCATGCTATCATGTCACTGAAATATCTGTAATGTATTAGACCAAAATTAAATATTCTTTATACAACAGAAATAGCCATGACCTTCTGATAGATATAACAAACA---------TTCCTCTTAGGGAAAAAAGAAATCTCTGTGTTGACCATTATGTTATTTCCTTAGTTGTGATGGAAAAATCTATATACAGTAAGGTCTTTCAAGAAAATGCCCAGACTGCTACAATCTAGTTGCATAATTATTT------TCTTACTCTC-CTCTCTCTCTCTCTCTCTCTCTCTCT s rn3.chr10 22205809 224 - 110733352 TGGTTCAAGAGGCATATGCATACTGTCATGTCACTGAAATATCCATAATATATTAGACCAAAATGAAGTGTTCTTTAAACAACAGAAATAGCCATGACTTTCCAATGGC----ACAGACA---------TTCCTCTTGGGGAAAAAAGAAATCTCTGTGTTGATTATTATATTATTTCCTTACCCAGAGTGCTGCAATCTAGTTACAT---GGT---------------------------------------TAAATATTT--------------------------TCTTACCTGGGGCCTTT s canFam1.chr9 14341099 254 + 53642819 TAGTCCAAGTA----ACATATAGTATCATGGTGTTGAAATAAGCTGAAAATGCCAGGCTATAGCACAGTATTATCCATCCACCAGAAATGG-CACACAATTCTGGAAGCAAAAAC--ACA--------GTTCCTGTTAG-----AATAGAACTTTTATGATGACCATTAATTCATCTCCTCAGTTGTCCTGGAAAATTCCAAATGTA-TAAGGTTTTTACAGGAAGTATCCAAAGAACAATCT----------CATCTATTT--------------------TCTTGGacttgtcttgggacttt a score=1335.0 s hg17.chr17_random 2553037 12 + 2618010 GGGCCAATTGCT s panTro1.chr19 42821585 12 - 82489036 GGGCCAGTTGCT s mm5.chr11 22412595 1 - 121648857 -----------C s canFam1.chr9 14341353 12 + 53642819 gggccattcact a score=59742.0 s hg17.chr17_random 2553049 251 + 2618010 TCCCTCTCAGTCTCAATTTCCCTGTTATTAAAGTGA--------TTTCCTACCTATAGCGTGGTTTCCTACCTATAGCTTGGTTTC-CTACAGGCTCAGTTAGCTTGTTATTACTCTCTGCCCTGCTTTTGTCTCAGGATTATTGTGAGGACCAGATGCCCTGAAGTGTAGAAACCAC---------CGTGTCCACAGCATCAACCTGTTACACATGAGAGACTCTCACCATTACTGCCATATGGAAGTTCCCAACTTTCTCACCAAAA s panTro1.chr19 42821597 251 - 82489036 TCCCTCTCAGTCTCAATTTCCCTGTTACTAAAGTGG--------TTTCCTACCTATAGCGTGGTTTCCTACCTATAGCTTGGTTTC-CTACAGGCTCAGTTAGCTTGTTATTACTCTCTGCCTTGCTTTTGTCTCAGGATTATTGTGAGGACCAGATGCCCTGAAGTGTAGAAACCAC---------CGTGTCCACAGCATCAACCTGTTATACATGAGAGACTCTCACCATTACTGCCATATGGAAGTTCCCAACTTTCTCACCAAAA s mm5.chr11 22412596 231 - 121648857 TCTCTCTCTCTCTCTCTCTCTCTCTCTCT---------------CTCTCTCTCTCTCTCCTG-----CTATCTGTAGCCTGGTATC-CGACAGCCTAGCTGACCTTATTATGATCTTACCCTCTGCTTATGTCTTAAAACTGCTATAAGGACTGAATGACCCAAAGGATAGATACTAC---------TTCATTCATAGTAGTGAGCTGTCCC-------AGCCTCTCACTGTGACTTCTAC-CAGATATTTCCAGATTTCACTCCAAAA s rn3.chr10 22206090 244 - 110733352 NCCCTCTCCCTCTTCCTCTCCCCCCTC-----------------TTCCCCCCTTCTCTCCTG-----ATACCTGTAGCCTGGTATCACAACAGTCTAGCTTCCCTTGTTATGATCCCATCCTCTGCTTATCTCTTAGAACTGCTATAAGAACTGAATGACCCAAAGGACAGAGACCGTTTTAATATGTTTATATATAGCAGTGAGCTGTCCC--AGGAGAGCCTTTCAATGTGACTTCTAC-CAGATAGTCCCAGCTTTCTCTCCATAA s canFam1.chr9 14341365 181 + 53642819 tttctctcaaccttagttttctcgtcatcacagcagaaataatactcccaccc--------------ctgcctgtatcctggcctc-------------------------------------------------aggattattgtgagactcagatgaCCCAA-----------------------CATGTCAACAGCCCCATTCTAAATG--GTGACAGACACTCGCCATTACTGCCACATAATGGTTCCCAGCTTTCGCACCAAAA a score=67.0 s hg17.chr17_random 2553300 1 + 2618010 G s panTro1.chr19 42821848 1 - 82489036 G s mm5.chr11 22412827 1 - 121648857 A s rn3.chr10 22206334 1 - 110733352 A a score=33788.0 s hg17.chr17_random 2553301 376 + 2618010 ACATCTTTTAAAAA----tatttatttatttatttatttatttatttCCGtagcttttgggttacaggtggtttttggttacatggatgaattatatagtggtggtgaattctgagattttagtgcacccgtacccaaggagtatacatggtagctaatgtgtagtgttttatccctggcctccctcccaccctccactttttgagtctctaaagtcc-attatatcactccatatgcatctgcatacttagtttagctcccacttataagtgaaaacatggttttttgttttccattcctgtaatttcccactccatttcactcagaataatggcctccagctccatccaagttgccacaaaagacattgtttcattccc s panTro1.chr19 42821849 381 - 82489036 ACATCTTTTAAAAAtatttatttatttatttatttatttatttatttCTGtagcttttgggttacaagtggtttttggttacatggatgaattatatagtggtggtgaattctgagattttagtgcacctgtacccaaggagtatacatggtagctaatgagtagtgttttatccctggcctccctcccaccctccactttttgagtctctaaagtccaattatatcactccatatgcatctgcatacttagtttagctcccacttataagtgaaaacatggttttttgttttccattcctgtaatttcccactccatttcactcagaataatggcctccagctccatccaagttgctacaaaagacattgtttcattccc a score=66562.0 s hg17.chr17_random 2553758 518 + 2618010 GGCATCTTTTTATTTCTTGAAATATGTA-TTTTTCCCAAATGGCTTTCTTAAA-AATGTTTATTAATTCCTTCATTTGTGTTCATAAATACATTTATAAATATCAATTAAATGTTTAGGATTACTATAGAATAACCTTTGTTACCATGCCAAGTTACCTTTTTTCTAGTCAAAAACAAAGAATTTTCATGTTTTCATACATGCTAGTAAGGGATAAAA-ATTAGAGTTT-GTTTTTAATACCTAAAATAACTCGAAGT-TCCTATTACTACTACCATGGTCTTT--AGCATTCACGGGCCC--tggcctagttataaatccccaactggaaaccagaagatgtgttgttttagtcctggctctgcctt-gagctgcctctgtggccctaagcaagtcaattaagttcttggggtctcaggtgttaaagcagtaaaatgggttggttgatcacaccatctctaaggttgcttttcgttttaacattctatgattctaGA--TCATCCAGAAGCATTCTAAGTAACAAGTAC-- s mm5.chr11 22412828 431 - 121648857 GACATTCTTCCATTTGGAAAAACATGCATTTTTTCCTAGATGACTTTACTAAATACTTTTTTTTAATTTCTTTTTTCTTTTTTCT---------------CATCAAT---GGGTTAAGTATTGGTATA----------------CATGAGGTGTCAGCATATACATGGTAA----------------------CCATTTGTCCTTATAAGGGATAAAT-TTTAGTTTTCAATTTTTGATATTGAAAACAGCTCTAAATGTGTTACTACAACCACCACACAGTTT--AGCATGCAAAGGCCCCTTGGGTCAGTGAAAAAGGCCCA-------------------------------------CTGCTTC-AGGCTGCTTCTGTGGCCCTGAACAAGTTTCATAAGATCTCTGGGTCTGTAGCCTTAAGTTGGTAAAATGGGTTGGTTAACCAGATCATATTTAAAGTGTCTTCCTGTTTAAACACACTGC-ATTGTAGC-TTTTTCCAGAAACACTTCAGATAACAAATAC-- s rn3.chr10 22206335 400 - 110733352 GACATTCTTCCACTTGGAAAAACATGCA-TTTTTCCCAGATGACTTTCCTAAA----TTTTTTTAATTCCTTCATTT-TTTTGAT---------------CATCAAT---GTGTTAAGTATTGGTGTA----------------TACAGAGTATCAGCATATTTATAGTAACCATCAATC-------------CTATCTGTCCTTATAAGGGATAAATGTTTAGTCTTCATTTTTTGATATTGAAAATAGTTCTAAAA--------------------------------------GGCCCCTTGGATCAGTGAAAAAAGTCTA-------------------------------------CTGCTTC-AGGCTGTTTCTGTGGCCCTGAACAAGTTTTGTAAGATTTCTGGGTCTGTAGCCTTAAGCTGGTAAAATGAGTTGGTTAACCAAATCACATTTAAAGTGTCTTCCAGTTTAAACACACTGC-ATCGTAGATTTTTTCCAGAAACACTTCAGATAACAAATAC-- s canFam1.chr9 14341546 491 + 53642819 GGCATCCTCTTATTCTTTGAAAAATATTATTTTTTCCACATACCTTTGTAAAATAACCCATTTC--TTCCTTCATGTTTGTTCATAAATACATTCATAAGCATTGGTGAGAATTTTAGGATTAATATG----------------CCCAAGTT----TCCTTTTTTTAGTCATAAGCAAAGAATTTTGACATTTTCATATATGTTTGTAAGGGTTAAATATTTAGATTTT-ATTTTTAATACTGAAAGTAAATCTGAGTGTCCTAGAAATACCACTGTGGACCTTTAGGCACTCAAAGACCCTTGGCACTAATTTAAATGACCCAGATGGAACACAGATGTGTGgct---------------ctgctcctaagctgcct-tgtggccctgagccagtcacttgagttctgtgggtctcaggtcttaaatcagtcaaacaggcttgttgaccagaatttctctagagagactttcagctttaacattctacggtcctaGG--TTATCCAGAAGCATTTTAAGTAACAAGTATAC a score=407.0 s hg17.chr17_random 2554276 5 + 2618010 CCCAT s mm5.chr11 22413259 5 - 121648857 TTTGT s canFam1.chr9 14342037 5 + 53642819 TCCAT a score=4547.0 s hg17.chr17_random 2554281 90 + 2618010 GCAACTAACCAAGCCCATTCTACCTCATTACTTTTA---CTGCTTTCATTAGGAATAGCTCACACTGAGTGAGTATCTACTGGACATACTAAt s canFam1.chr9 14342042 93 + 53642819 GCCACTAACCAACTGCATCCCACCTGATCACTTTTAGTGCTACTTTCATTCataatagctaacatttggtgaatatctattgggtattctaat a score=992.0 s hg17.chr17_random 2554389 55 + 2618010 ctactccagaagcggggctcagatactggaccaaattgagg------gctagctaaaacag s mm5.chr11 22413384 56 - 121648857 TTATTCCA-----TGGGCTCGGGTCCTGAACTCAATGAAAGACAGAAGTCAGCTGAAACCT a score=904.0 s hg17.chr17_random 2554864 19 + 2618010 gcagaaactcaggctgaga s mm5.chr11 22414215 19 - 121648857 GAAGAAACAGAAGCTAAGA a score=28189.0 s hg17.chr17_random 2554883 360 + 2618010 aagactaaattacttgcaaaagttacataaatcataagtgagagagaaggacttaaaccccaaa-----ctaagtcc-gaagtcccttctctttccactacaccaAAGC-ACTCACCTTCCCCACAGACAGCAATATGTCAAAGAGAAATGTGACTATAGGTGGCTCTCTTTATTCAGGAG-AAAGTATATGACACTTG----ACAATATATTCTCTACTATCCCTGTCAATTGTATCTTTTGTTGT------------TTTCTCTGTTTTCTCTGT-GGTGATTATAGTCTAAAATAAAATGAGTGTATACAATGAGTATTAAAAAAGGTATCCGTGTTTCTAAGTTAAGAAC--AAACC----TTTTTTAAAAAGTCAGACTT-----TACTGA s mm5.chr11 22414234 364 - 121648857 AAGACTAAGCAACTTCCAAATGTTGCAAAACTCACTAGTGACAAAGACAGATTTAAATCCCAAAACTACCAGAACCC-CAAGTTTCTTCCTTCTCTACCATGTTAAATCTACCTGCCTTCTTTCCAGATAGGAAGA----------AAATGTTCTTGTACCTGG--CCCATTATTTGGCAG-AACATAAATACCACTCGGTACACAA------CTCTACAATCCCTTGAGATTGTAAGCTTGGCTATGTAATATCAAAGCTTTTCAGCTTTCTTCATGGGTGAGTATAAGGTAAGACAAAACAAGAGTATGTAGAAAATATAAGAAAAA------AAGTTTCTAAACTAAGAGCATAACTC----TTTTTCTTTCAGTTGGACTT--AAAGACTGA s canFam1.chr9 14342227 377 + 53642819 aaaactgag--actcgaaaaagttacacaaatagtaagtgattgagtggggattaaacctaaaa-ctgcctgaatccaaaagctgcttctctttcctctacaccaAAGC-ACACACTTCCTTTGCAGACAGCAATATGCCCGAGATAAATG-GATTACATGTGGCTCTCTTTATCCAGGAGAAAAGTATATGCCACTTA----ACAGTACATTTTCTTCTGGCCCCCTAAATTGTATATTTGGTTGT---ATATAGTAACTC----ACTTTCTCTGG-GGTGATTACAGTCTAAGGCAAAATGAGTACATACAAAGAGTCTAGGAAAAGCTCTTTGTGTTTCTAAGGTGAAAAC--AAATCATCTTTTTTTTTTCAGCCAGACTTTAAAATACTGA a score=36213.0 s hg17.chr17_random 2555243 197 + 2618010 TTAGCAGTGTCAGCAGAGAAGAAATATTGGCTG---CATCATTAACTTTGAATTGAAATGCAGAATGTTTGGCAACTCAAACAC--------ATTTTCAGTTCAACTTCAGCATCAATAATCAAGGT-AAAAC-AACTGCCCTTAACATTAATAATTGTTTATCCTTGATAATATAATAAAAAA-CAAGATATTTCATTTTTCCTTCAAAT s panTro1.chr19 42822230 198 - 82489036 ttAGCAGTGTCAGCAGAGAAGAAATATTGGCTG---GATCATTAACTTTGAATTGAAATGCAGAATGTTTGGCAACTCAAACAC--------ATTTTCAGTTCAACTTCAGCATCAATAATCAAGGT-AAAAC-AACTGCCCTTAACATTAATAATTGTTTATCCTTGATAGTATAATAAAAAAACAAGATATTTCATTTTTCCTTCAAAT s mm5.chr11 22414598 195 - 121648857 CTGGCATTATCAGTACCG-------TTTCGCTGTCTAACCATTCAGCTTGAGTTAAAATGTGGACTATTTGGCAAATGCGATAT------CAATTTTC--TTGAGTTTCAAGGACCTGTAGCAAAGC-AAAACAAACTGCCCTTAAATTAAGTAATTATGTGTTGTTGCCAACAGAATAAAGGGCCAAGGAATTGTATTTCTTCTTCAGCT s canFam1.chr9 14342604 167 + 53642819 TTAGCAACCTTCACACAG-------GTTAA-TG---GGTCATTAACCTTGCGCTGAAATACAAAATGTTTGGCAACTCAAACACATTTTTTAATTTTCTGAGGAGTTTCAATAACCCAGTTCAAAGTGAAAACAAGCTACCTGTAAAGTTAATAATTGT---------------------------------TTTCATTTTTCTTTCAAAT a score=846.0 s hg17.chr17_random 2555440 3 + 2618010 TGT s panTro1.chr19 42822428 3 - 82489036 TGT s mm5.chr11 22414793 3 - 121648857 TGT a score=14144.0 s hg17.chr17_random 2555443 155 + 2618010 TATTGAggccaggcacagcgactcgtgcctgtaatcccagcactttgggaggctgaggtgggtCTactgtgagtccattaaacttctttcctttataaattacccaatctcgggtatgtccctatagcagcatgagaacagactaatacaGTATG s panTro1.chr19 42822431 155 - 82489036 TATTGAggccaggcacagcgactcgtgcttgtaatcccagcactttgggaggctgaggtgggtctactgtgagtccattaaacttctttcctttataaattacccaatcttcggtatgtccctatagcagcgtgagaacagactaatacaGTATG a score=10185.0 s hg17.chr17_random 2555598 48 + 2618010 GATGTGTCTACATG----TGAGTAAGTGGAAAACTACACTGACACCATTTTG s panTro1.chr19 42822586 48 - 82489036 GATGTGTCTATATG----TGAGTAAGTGGAAAACTACACTGACACCATTTTG s canFam1.chr9 14346183 52 + 53642819 GAAGTATTTACCTGTGATTGAGTAAGTGAAGAACTACACTGATACCATTTTG a score=1638.0 s hg17.chr17_random 2555646 3 + 2618010 AAA s panTro1.chr19 42822634 3 - 82489036 AAA s mm5.chr11 22418025 3 - 121648857 AAA s canFam1.chr9 14346235 3 + 53642819 AAA a score=590752.0 s hg17.chr17_random 2555649 1104 + 2618010 CTACAACAGAAAGCAAGTTTGAATGCAGCAACACAACTAAATAAAACTGAAGGAGAGCTCATCCCCTGTCTGATACATAAGAAGTTAGTGAGTTATTTTTACAGAATTAGGTAAACAGCAACAAGGATGTTCCGTCCAACATTCTGATGGACAGAAGCCGTGTTCCCTGAGATAGGTGGATATAAAAGACCCATAGAGGACAACCTTGTAGAAGAAAGCC-TTCCTTTGCCACAAAACATTGTCCTGGTCCACTGTCACTATGTCTTGCTGTGATTCCTATCTCCAAGGATGCTGCAGCGTCC---CCACTGGCCTGGCCACCACTATCTGCCCCTCTGACATAAGCTGTCAATGTGAAGTCTGCCTACCCAGCACCTGTCCTCATGAGATCAGCCTCCTTCAGCCCACCTGCTGTGA-ACCTGGCCCCTGCCTGGCTGCATGCCTGACTCCTATGTGCCATCCTGTTGACTGCTCAACAAATGCCACCCAGCTCCAACCCTGAGCGGGCTCTCTGTCACCACCTGCATCCA-------GAGTGTGAACCACCTTGCTGCTAG----------CCAAA-------------GAG----CTTGCCCACATTACCCTGAGGACCTTCAG---TAGTCATTAAGCGCTGC-TCAGCAAATGGCCTTTAATGAGGCCATTTGGAAGAAAA---TATAGCACTGTGCCTTCAGTTTTACAGAAGTTTTCTTTTCCTGTTTTGAACAATGATTTCAAATGAGAAATGGGAAAAAAAATGCTACCATGGATCCCCTTACTTCAAAACTAAATAAACACCACTACTCCCCAAACCACATACTGCCTCAACATTTAATGCTATAATTACCCAACGACTCTTGACACATG----CATCATGAACTTAAAAATACATCCAGCAGAATTACACTTTCTGATGACATCAACATAAAT-TTCATAGCCAAAAAGAGGCCTCACAGGCATACGTAGATACCTGAAGAAAACTGTGAGGATAGTGAAATGCATTAGGCTCTAAGCTTAGAATCG-TTTTAAATGCCAAGGTCAGCATCTACCTTTGATTTTTAT-TTTTTCCCTGCCTCTAAATA---AACTC--ACGTGTC--CTTAAAGAGGCAGTGAAGCTAGCAATTTGAGATCAACATGCTCACA s panTro1.chr19 42822637 1104 - 82489036 CTACAACAGAAAGCAAGTTTGAATGCAGCAACACAACTAAATAAAACTGAAGGAGAGCTCATTCCCTGTCTGATACATAAGAAGTTAGTGAGTTATTTTTACAGAATTAGGTAAACAGCAACAAGGATGTTCCGTCCAACATTCTGATGGACAGAAGCCGTGTTCCCTGAGATAGGTGGATATAAAAGACCCATAGAGGACAACCTTGTAGAAGACAGCC-TTCCTTTGCCACAAAACATTATCCTGGTCCACTGTCACTATGTCTTGCTGTGATTCCTATCTCCAAGGATGCTGCAGCGTCC---CCACTGGCCTGGCCACCACTATCTGCCCCTCTGACATAAGCTGTCAATGTGAAGTCTGCCTACCCAGCACCTATCCTCATGAGATCAGCCTCCTTCAGCCCACCTGCTGTGA-ACCTGGCCCCTGCCCAGCTGCGTGCCTGACTCCTATGTGCCATCCTGTTGACTGCTCAACAAATGCCACCCAGCTCCAACCCTGAGCAGGCTCTCTGTCACCACCTGCATCCA-------GAGTGTGAACCACCCTGCTGCTAG----------CCAAA-------------GAG----CTTGCCCACATTACCCTGAGGACCTTCAG---TAGTCATTAAGCGCTGC-TCAGCAAATGGCCTTTAATGAGGCCATTTGGAAGAAAA---TATAGCACTGTGCCTTCAGTTTTACAGAAGTTTTCTTTTCCTGTTTTGAACAATGATTTCAAATGAGAAATGGGAAAAAAAATGCTACCATGGATCCCCTTACTTCAAAACTAAATAAACACCACTACTCCCCAAACCACACACTGCCTCAACATTTAATGCTATAATTACCCAACGACTCTTGACACATG----CATCATGAACTTATAAATACATCCAGCAGAATTACACTTTCTGATGACATCAACATAAAT-TTCATAGCCAAAAAGAGGCCTCACAGGCATACGTAGATACCTGAAGAAAACTGTGAGGATAGTGAAATGCATTAGGCTCTAAGCTCAGAATCG-TTTTAAATGCCAAGGTCAGCATCTACCTTTGATTTTTAT-TTTTTCCCTGCCTCTAAATA---AACTC--ACGTGTC--CTTAAAGAGGCAGTGAAGCTAGCAATTTGAGATCAACATGCTCACA s mm5.chr11 22418028 1107 - 121648857 CTGCAGCAGGAAGCAAGTTTGGGTAAAGCAACACAGCCAAATAAAACTTCAGGAGTGTGTGTCCCGTGGCTGATA---AAGAAGGCATTGCGTTATTTGTGTGGAGTTGTGCAAACACCAACAAGGA----------AGCAGACTGA-AGACTGAGGCCATGGTCCCTGAAATAGGTAGGTATAAAAGGCCCTCCAAGGGCAACTTTGTGGAAGAACGCCGTTCCTCAGCAACAAAA------CCTGGTTCACTGTCACCATGACCGGCTGCAATTCCTATCTGCAAGGATGCCGTATCGTCC---CCATTGGCCCGGCCACCACCCTCTGCTCCTCTGACATATACTGTCCGTGTGGAGTCTGCCTGCCTAGTACCTGTCCACACAAGATCAGCCTCCTTCACCCCAGCTGCTGTGACACTTGCCCCCCATCCTGCTGTGTGCCTGATTCCTATGTGTCATCGTGTTGGCTGCTCAACAAGGGCTACCCTGCCCCAAACCTGAAGGGGATCTCTGTTTCCACCTGTGTTGAACCCTGTGAGTGTGACCCCTCTTGCTGCTAAATGAAAGCACTTAAA-------------AAGCTTCCTTCCCTACCTTGCCTTAAGGATCTACAAAGTTTGCCACTGACGGCTGCATTAACAAATGG-CTTTAGTGAGGCACTTTGGAATACGT---TTTGACCCTGAGGCTTCATTTTTACAGAAGTATTCTTTCTGTGTTTTGAGCAATGATTTCAGGT---AAATGG---AAAAATTGTTCTCCTAGATCCCCATGTTTTAAAAGTAAATAAACACCTCTACTCCCCAAATCTTGTGTTGTCTCGGTGTCTGATGCTATAATTACCCAAGGACTCTTGACACAAG----CATCATGAAGCTATAAATGTGTACAGCAGAGTTATGCTTTCTGATGACATCAACATAAATCTCCATAGCTGAAAGGAAGTCACACTAGGATACGCAGATACACGCAGGAGACTGCCTGACTCATAAAACACATTC-ATACTGAGCTTAGAATTGTTTTTAAATTCCAAGATCAGCACCTACCTTTAACTTTTGT-TTTCCCTGAATATTTAAACA---AACTCAAATGTGTC--CTTGTAGGCACAGCCAAGCTGATCATTAGACATGCACACACTCACA s rn3.chr10 22210947 1100 - 110733352 CTGCAGCAGGAAACAAGTTTGAGTGAAGCAACAGAGCCAAATAAAACTACACGAGTGCTTGTCCCATGCTTGATA---AAGAAGGCACTGTGCTATTTGTGTGGATTTGTGCAAACATCAACAAGGA----------AGCATTCTGA-AGGCGGAGGCCATGTTCCCTGAAATAGGTGGGTATAAAAAGCCCTCCACGGGC-ACCTTTTGGAAGAACACC-TTCCTCAGCAACAAAA------CCTGGTTCACTGTCACCATGACTGGCTGCAATTCCTATCAGCAAGGATGCTGTAGCGTCC---CCATTGGCCCAGCTACCACCCTCTGCTCCTCTGATGTATACTGTCCATGTGGAGTCTGCCTGCCTAGCACCTGTCCACACAAGATCAACCTCCTTCAGTCCAGCTTCTGTGACACTTGCCCCCCACCTTGCTGTGTGCCTGACTCCTATGTGTCATCGTGTTGGCTGCTCAACAAGGGCTACCCTGCCCCAAACCTGAAAGGAATCTCTGTTTCCACCTGTGTTGAACCTTGTGAGTGTGACCCCTCTTGCTGCTAAAGGAAAGCATGTAAA-------------GAG----CTTCCCTACCTTGCCCTATGGATCTGCAAAGGTTGCTATTGAGGGTTGC-TTAGCAAATGG-CTTTAGTGAGGCACTTTGGAATATGC---TTTGACCCTGAGACTTCATTTTTACAGAAGTATTCTTTCTGTGTTTTGAACAATGATTTCAAAT---AAATGG---AAAAATTGTTCTCCTGGATCTCCATATTTTTAAGGTAAATAAACACCACTACTCCCCAAACCTTGTGTTGTCTCGGTGTCTAATGCTGTAATTACACAAGGACTCTTGACACATG----CATCATGAAGCTATAAATGTGTACAGCAGAATTATACTTTCTGATGACACCAACATAAATCTCAATAGCTGAAAGGAAGTCACACTAGGATACGCAGATACATGCAGACGACTGCCTGACTCATAAAACACATTT-ATACAAAGCTTAGAGTTGTTTTTAAATTCCAAGATCAGCACCTACCTTTAACTTTTGT-TTTCCCTGAATATTTAAACA---AACTCAAATGTGTC--CTTGAAGGCACAGCCAAACTGGCCATTAGACATGCACACATTCACA s canFam1.chr9 14346238 1082 + 53642819 TGGCAGCAGGAAGCACGTTTGAATGTAGCAACACAACCAAATAAAACTGAAGGAGAGCTTATT-----GCTGATAAATAAGAAGTTAGTGAGTTATTTGTATGGGATTATACAAACAACAACAGGGA----------AACATTCTGATGGGCAGAAGCCATGGTCCCTGAGACAGCTGGATATAAAAGACTCACAGAGAACAACTTTGTAGA--------------CAGCAACAAAA------------------------TGTCTTACTGTGAGTCTTGTCTCCAAGGCTGCTGCAGGATCCCCACCACCGGCCCCACCACCACCATATGCTCCTCTGACCTGTGCTGTCAATGTGGAATTGGCCTGCCCAGCACCTGCCCACACCAGCTCAGCCTCCTTCAGCCCACCTGCTGCGACCCCTGCCCCCCACCCTGCTGTGTGCCTGACTCCTATGTGCCATCATGTTGGCTTCTCAACAGCTGCCACCCTATTCCAAACCTGAGTGGGATCTCTATCACCACCTGTGTCCAACCCTGTGCATGTGAAGCACCAGG-TGCTAG----------CCAAAGATATGGCTATGGGAG----CTTGCCCACATTGCCCCAAGAGACAACAA---TAGTCATTAAGGGCTGC-TCAGCAAATGGTTTTTAATTAAAAGCTCTGGAAGAAAACGTTCTGACACTGTGCTTTCAGTTTTGCAGAACTGTTCTTTCTGTGTTTTGAATGATGACTTACAGTGAGAAGTCG---AATAAACACTGTCATGAGCCTCCTCACCTTAAAACTAAATAAGCACCACTGTGCCCCAAACCATGTACTGTCTC-GTGTTTAATGCTATAATTACTGCACAACTCTTAACGCATGTGCACATCATAAACCTATAAATACGTCCAGCAGAATGACATTAACTGATGACATCAACATAAAC-CACATAAGCAAAAAGAGGCCTCACAAGGTTATGTAAATACTTGAAGAAAATTGCCTGAATGGTCAGATATATTAAGATGTAAGCTTAAAATCA-TTTTAAATTCCAAGGTCAGCCCCTGCTTTTAATTTTAATGTTTTCCTGTCTCTCTAAGTAAATAACTCACATATGTCTGTTTAAAGATTCTGAGAAACTGACAATCAAATATCAACATACA---- a score=14476.0 s hg17.chr17_random 2556753 74 + 2618010 GAAAGGACCTCAAAGATTGAGCCAAGCCCATTTTTTTCGCTGTCTCATTTAGGTAAATCTTTGAATTTAAAAAT s panTro1.chr19 42823741 74 - 82489036 GAAAGGACCTCAAAGATTGAGCCAAGCCCATCTTTTTCACCGTCTCATTTAGGTAAATCTTTGAATTTAAAAAT s canFam1.chr9 14347320 74 + 53642819 GAAGAGACCCCGAAGACTGAGCTGACCCATATTTTTTCATTGACTCATTTAGGTGAAGCTTTGAATGTAAAACT a score=26921.0 s hg17.chr17_random 2556827 301 + 2618010 GTTggccaggcatggtggctcacgcctctctaatcccagcactttgggaggctgaggcgggcggatcacctgaggtccggagttcaagaccagcctgaccaacatggtgaaagcccgtctctactaaaaatacaaaattagccgggcatggtagagcatgaatgtaatcccatctattcctcaggctgaggcaggagaatggcttgaacccgggaggcagaggttactgtgagccaagatcgtgccattgcactccagcctgggcaacaagagcaaaactccatctcaaaaaaaaaaaaaa s panTro1.chr19 42823815 298 - 82489036 GTTggccaggcatggtggctcacgcctct--aatcccagcactttgggaggctgaggcgggcggatcacctgaggtccggagttcaagaccagcctgaccaacatggtgaaagcccgtctctactaaaaatacaaaattagccaggcatggtagagcatgaatgtaatcccatctattccgcaggctgaggcaggagaatggcttgaacccgggaggcagaggttgctgtgagccaagatcgtgccattgcactccagcctgggcaacaagagcgaaactccatctcaaaaaaaaaaaaG- a score=80025.0 s hg17.chr17_random 2557128 447 + 2618010 GTTTTGACAACTGTAAAGCAATTCACACAAAAAATGAATCACTCTCTTTATATAA---------AGTGTTACTGTTATAAAAGGCCATTATAAAAATAAATAAATACC-TTTTTAATTCTAATCTGAAATGTAATCCAattcaacaaatatttatcaaatgcctaccctgtttcaggcattgtcctaggtgcttgaa-aaagacaaataaaactaacatacgattaccacttccaagaaccttgcattggagtgaggaaaacaaatttaagtgacaaactacaaaatatagcagaaagaaatgaggttgaaagggaagaataggcagcccattttgtgagagcagagaaaaggatgcaaacatctagaagaatcacctagagtttctttatgaaggggatgtttg-gctgaatcttgagggatcaacaggatttggaaactagagaattgggaaaggtc s panTro1.chr19 42824113 447 - 82489036 GTTTTGACAACTGTAAAGCAATTCACACAAAAAATGAATCACTCTGTTTATATAA---------AGTGTTACTGTTATAAAAGGCCATTATAAAAATAAATAAATACC-TTTTTAATTCTAATCTGAAATGTAATCCAattcaacaaatatttatcaaatgcctaccctgtttcaggcattgtcctaggtgcttgaa-aaagacaaataaaactaacatacgattaccatttccaagaaccttgcattggagtgaggaaaacaaatttaagtgacaaactacaaaatatagcagaaagaaatgaggttgaaagggaagaataggcagcccattttgtgggagcagagaaaaggatgcaaacatctagaagaatcacctagagtttctttatgaaggggatgtttg-gctgaatcttgagggatcaacaggatttggaaactagagaattgggaaaggtc s canFam1.chr9 14347394 440 + 53642819 GTTTTGACAAGTGTAAAGCACTTCAC-----AACTGAATTGTTCTGCTTATGTAAattattattattattattattatAAGGGTATATTCTAAAAATAAATACATACCTTTTTTCATTCTAATCTGTAATTTGATCCAattcaatatacatttatcaaatgcctactatgttccaggcactgaatgaagtacttgaatagagacaaagaagatgaagacataattcccattttcagagagtttgcactggagtgaggaagacagatataaatgatgaaccataatatataacagactaacacaaggtctaaatataaagacaggcagcacactttgtgaaagcaaaga-------------atctagaagaaccacctaaaagcta-ccgtgaaggagatatttgaattgatgcttgagtaatgagtagcatttgaaaagtagagaatcagggaaggac a score=1119.0 s hg17.chr17_random 2557575 12 + 2618010 actttaagctaa s panTro1.chr19 42824560 12 - 82489036 actttaagctaa a score=14038.0 s hg17.chr17_random 2557587 79 + 2618010 agaaacagtatgaacgaggtcacagagg-gtaaagtacctagGAGACTCCCGCCTTCACTTTATGTAATGTGCTGTATGa s panTro1.chr19 42824572 79 - 82489036 agaaacagtatgaacgaggtcacagagg-gtaaagtacctagGAGACTCCCGCCTTCACTTTATGTAATGTGCTGTAtga s canFam1.chr9 14348038 78 + 53642819 AGAAACAGTATGATCACAGTCACAGAGATGTTAAGTACCTAGAAGGCTTTAACCAC--TTTTATTTGATATGCTTTGTGA a score=91.0 s hg17.chr17_random 2557666 1 + 2618010 t s canFam1.chr9 14348116 1 + 53642819 T a score=18621.0 s hg17.chr17_random 2557666 128 + 2618010 ttaacatatgcgtgactcacatagttatcatttttgt-----gatgagaacacttaatccattctctcagcgtttttcaaaaatgcaatatatggttattcactatagtcaccatgttgtacagtagatctcc s panTro1.chr19 42824651 128 - 82489036 ttaacatatgcgtgactcacatagttatcatttttgt-----gatgagaacccttaatccattctctcagcgtttttcaaaaatgcaatatatggttattcactatagtcaccatgttgtacagtagatctcc s mm5.chr14 94401723 124 + 117079080 TTAACATGGGCTTTAC-CGCATG--TATCAATTTTTTTCCACAGTGAGAACACTTAA--CATATACTCAGCA-TTTGCAAAACTACAATACA---TTATTAATTACCATCACCTTGTGGTATAATAGATCTAT a score=54545.0 s hg17.chr17_random 2557794 248 + 2618010 tgaatctatATAATATTTCAAAATCGATTTTAAAAGAGAAGTCAGAGAGAACACAGAGAATG----GGAGAGGGTC-TTCTTCATATATTCTACTTGCCAAGCCACTGG--CTTCTAG---ATGAGAGAGACTGGTAAGTCAAGAGTAAGTAAACATTAAACATTTCCTTGACGATTTCAATACTAGTTCATTAACTTTGAATTTT-----ATAATATACTGGGAAAGCCACTTGAATT-TGCTTATCTGTTCTTCAGTGGTAA s panTro1.chr19 42824779 248 - 82489036 tgaatctatATAATATTTCAAAATCGATTTTAAAAGAGAAGTCAGAGAGAACACAGAGAATG----GGAGAGGGTC-TTCTTCATATATTCTACTTGCCAAGCCACTGG--CTTCTAG---ATGAGAGAGACTGGTAAGTCAAGAGTAAGTAAACATTAAACATTTCCTTGACGATTTCAATACTAGTTCATTAACTTTGAACTTT-----ATAATATACTGGGAAAGCCACTTGAATT-TGCTTCTCTGTTCTTCAGTGGTAA s mm5.chr14 94401847 222 + 117079080 TGGACTTGT---TCACTTTATGATAACTTTTAAAAGAAATCGTAAAAATGAAATA---------------------------CATACTTTCCATCTTCCAAGCCTCCAGTTCTTATAG---AAGAGTGAAATTATTAAGCTAAGAATAGATAAGCATGGAGCATTTTGTTGGTGAATTCAATGCAAGTTTAGCAACTTTGAATTTTGCTCCATTATTTCCTTGGAAGCACACTTCCATCATGCT---------TTCAATATTAA s canFam1.chr22 32783720 247 + 64236280 TGAAATTGTACAACATTTCAAGATAAATTTT-AAAGAGAAGTCAAAGAAAAGGCAGAGAATGTAACAGAGGGGCTCTTTCCTCATCTATTCTACAGGCCAAACCATGGG--CTTATAGACAATAAGAGAGATCAACAAGTCAGGTGTAAGCAAACATTAAAAATTTCCTTGATGGTTTCAATACTAGTTCATTAACTTGAAATTTT----TACAATATATTGAAGAACTTGC--GAATT-TGCTTA-------TTCAGATTTAA a score=1513.0 s hg17.chr17_random 2558042 7 + 2618010 AGTGCAG s panTro1.chr19 42825027 7 - 82489036 AGTGCAG s canFam1.chr22 32783967 7 + 64236280 GGTACAG a score=82509.0 s hg17.chr17_random 2558049 902 + 2618010 GTATtgaggcaggagactagcaaagggaattaaaacttggataaagggtggagtgaataaaagcagagaccagaagcaaggtgaaggggcaggtaagcaagaagcaagataagaagcagaagttagaccaggcgcggtggctcatgctgtaatcctggcattttgggaggccgaagcaggtggatcacttgagatcaggagttcaagaccagcctggccaacatggagaaacacccc-tctctacaaaaaatacaaaacttagctgggtgtggtggcgggcacctgtaatcccagctgctacttgggagtctgaggtaggagaatcacttgatcccagaaagtagaggctgcagtgagcagagaatgccactgcactccagccaaaacaaaaagtaagatagagaagaaagcaaggcccccatggccggcaagataaggaccaaaccagtaaggggcaactcttcatggataagcatgtgcattaaagagaaaacgtatccttaacatgaccttgtatgaaaatcagctcattcaggcttatgcatatggactgcatatcatgtatgt-acttaaaattatgggctggaggtggtgcgcaagcacacaggggccaaagtaactaagcaacacacctgtcaatcaaagaggcaaacactggctagagattaggcagccttgggaagggacacacacacacacatacacacacacacacacacacaaagacgcaaactgcaccaagctgggggctgatctcatctcacagaggctggtttgctctccccctcttagagtgtaatactgtgcttaatacacttttgtttctttgttttgctgtgggtgtctcgtccaattctttg----ggacaccaaaagcctggaactgcatggcaccatctggtaaca s panTro1.chr19 42825034 906 - 82489036 GTATtgaggcaggagactagcaaagggaattaaaacttggataaagggtggagtgaataaaagcagagaccagaagcaaggtgaaggggcaggtaagcaagaagcaagataagaagcagaagttagaccaggcgcggtggctcatcctgtaatcctggcattttgggaggccgaagcaggtggatcacttgagatcaggagttcaagaccagcctggccaacatggagaaacaccccctctctacaaaaaatacaaaacttagctgggtgtggtggcgggcacctgtaatcccagctgctacttgggagtctgagataggagaatcacttgaacccagaaagtagaggctgcagtgagcagagaatgccactgcactccagccaaaacaaaaagtaagatagagaagaaagcaaggcccccatggccggcaagataaggaccaaaccagtaaggggcaactcttcatggataagcatgtgcattaaagagaaaacgtatccttaacatgaccttgtatgaaaatcagctcattcaggcttatgcatatggactgcatatcatgtatgttatttaaaattatgggctggaggtggtacgcaagcacacaggggccaaagtaactaagcaacacacctgtcaatcaaagaggcagacactggctagagattaggcagccttgggaagggacacacacacacaca--cacacacacacacacacacaaagacgcaaactgcaccaagctgggggctgatctcatctcacagaggtcggtttgctctccccctcttcgagtgtaatactgtgcttaatacacttttgtttctttgttttgctgtgggtgtctcgtccaattctttgtttgggacaccaaaagcctggaactgcatggcaccatctggtaaca a score=18974.0 s hg17.chr17_random 2558951 60 + 2618010 GTATGATGTTCGACA---CCCTTGGCATTTGTTGTAAATTCCTGCTAATAAAAATGATTTG-AA s panTro1.chr19 42825940 60 - 82489036 GTATGATGTTCGACA---CCCTTGGCATTTGTTGTAAATTCCTGCTAATAAAAATGATTTG-AA s mm5.chr14 94402077 64 + 117079080 ACATGACAGTCAACAGCGTCCTTGCTATTTACTGTAAACAACAGCAAATAAAAGTGGTTTGAAA s canFam1.chr22 32783974 60 + 64236280 AGATGATGTTCAACA---CCCTTCACATTTGTTGTAAATTTCTGCTAACAAAAACGACGTG-AA a score=1992.0 s hg17.chr17_random 2559011 7 + 2618010 GCTGTTT s panTro1.chr19 42826000 7 - 82489036 GCTGTTT s mm5.chr14 94402141 7 + 117079080 GCTGTTT a score=39693.0 s hg17.chr17_random 2559018 428 + 2618010 TCTGTTtttttgtttttaacttttaagttcaggggtacctgtgcaggtttgttacataggtaagctggtgtcatgggggtttgttgtacagattatctcatcacccacgtattaagcctagtacctaccagttatttttcctgatcctgtccctcctcccaccttccaccctctgataggttctagcatctgttattcccctctatgtgtccatgcgttctcatcatttagctaccacttataagtgagaacatgcagtattcggttttctgtttctgcattagttactaaagataatagcctccagctccatccatgtttcttcaaaggataggagctccttattttttatggctgcatagtattctatggcatatatgtaccacatatttttGTTGTTAAAGAAAAAGATAAACTGGTTGTTTTAA s panTro1.chr19 42826007 428 - 82489036 TCTGTTtttttatttttaacttttaagttcaggggtacctgtgcaggtttgttacataggtaagctggtgtcatgggggtttgttgtacagattatctcatcacccaggtattaagcctagtacctaccagttatttttcctgatcctgtccctcctcccaccttccaccctctgataggttccagcatctgttattcccctctatgtgtccatgtgttctcatcatttagctaccacttataagtgagaacatgcagtatttggttttctgtttctgcattagttactaaagataatagcctccagctccatccatgtttcttcaaaggataggagctccttattttttatggctgcatagtattctatggcatatatgtaccacatatttttGTTGTTAAAGAAAAAGATAAACTGGTTGTTTTAA a score=11529.0 s hg17.chr17_random 2559446 51 + 2618010 CGTATAACGTATAAGGCTTACCTACCAATGACATTTGATATTTTCCACTGA s panTro1.chr19 42826435 51 - 82489036 CGTGTAACGTATAAGGCTTACCTACCAATGACATTTGATATTTTCCACTGA s canFam1.chr9 14348172 51 + 53642819 CGTAAAATGCATGAGGTTTATTTACCAAGGACATTTAATATTTTCCACTGA a score=12838.0 s hg17.chr17_random 2559497 62 + 2618010 ----TTTTAGCCAGCTTTCTTCTCTTTTAAGTAGATCGTACTGGTTTTTGGTAATGTCCCCTCAGA s panTro1.chr19 42826486 57 - 82489036 ----TTTTAGCCAGCTTTCTTCT-----AAGTAGATCGTACTGGTTTTTGGTAATGTCCCCTCAGA s mm5.chr11 22419638 59 - 121648857 ----TCTCAGTTATCCTTCTTCT--TTTAAACATGTCCTGTTGG-ATGAAACAATATCCCACCAAG s canFam1.chr9 14348223 66 + 53642819 TTTGTTCCAGCTGGGCTTCTTCCCTTTTAATCAGGCCAAGTTGGTTTTCAGTAATGTCTCCTCAGA a score=984106.0 s hg17.chr17_random 2559559 2477 + 2618010 AACAACCTACC-CGGAATCTTTGCTTTCTGTTAAGTCAACA---AATTGCCAC--------------ATAACGAG-TATGTAATTTAAATTATACAATATTATCTGAAAGGATTTGTGCTGATCATGGACAGGTGTAGGAAGATGTTGGAATCTAGAATATTACACATTTGATATTA-------TCTAGT----------TCAATCTCT----------------------GGCTGACTTAAGTAAATAATGTTGTTTAAGGCATACCTCAAAGGAATTTCAAT-CTAGTTCAAGATCCAAGGTATGAAAACAAATAAACATGCAAAGTAGGGAGTAAGTCAGTG-AAAAAGTGATTTTT----ATGAATGCCATAGTTCTAAATTGCATTGAGTCAGATTCCCTGCCAAAATCCATGATT-GTTCTGTGACTCTTGTGGTTTCTCCTTTTAATTCTTATTTCATCTTATTTTAAAGTATGTACACCATTCATGTGAAAATGAATCAAGGCTGAGGTGGTTTTCTTTTAGTGGTATATTCAACAAAGAATGGCCACTG----TGTGGATCCT--------TCCTTCCAATGA-ATTTATACTTTGATTCA-CCACAAGATTGGCATAACTTT--GAGAATAGAG--------------------------------ACTATTTTAGAAAA-------------------------------AAAAAATCCATAGAATAATACAACATTGAGAAATTCACTACAGatttaataaaaataataaaaaGGAGTTTCTTCATCCTGTACCATTCTA----CCACTTTGCTTGCTCAATAGAACCTGAATTATAATATCACTAAATAATGCAAACATGTCCGAGATGCCTGTAGTCACATGAAACATTCATCTGTAAATAGCCATATTCTTGTTGACTTTATTGAGTTGAAAATGGTCCAGTTCATCATTTGAGTTACTCATTCTGAAATT-----AGTCATTA-----GAAATCACATTATCCATAGTATTTTAAATTAAGAGGGA--AAAACAAGA---AGAGTTTGGCCTCCAAAATTACAGCTGAATTGTCACTTGGATTGATTACCCATAAAAGTCATATAAGGTTTGGCATG-CCAGAAACCTGTGAAGACAAAATGTGATGATCTTGTGACAAAAATGACAAGTCAATGAGTCAAAAATAT-GATTAA-CTTAATAAGAGCGGGAACTCTTAATGGAC--ATGTAAATGACAAACTGATTAGAGAATCTCAGTGAAAAAGGGTGCCATAAAC-AAAACA---------GGAAGGCTTCCAGTTGGACCAATGCCCACTTGGGAGGGTATATAAGAGCCCTAACAAAAGAGGAGACATTTGTACCTCAGAATCCTCATCTAAGAAA----CTGAAAGCTAACCAGACGCCCATTGCCATGGATTGCTGTGCCTCTCGCAGCTGCAGTGTCCCCACTGGGCCTGCCACCACCATCTGCTCCTCCGACAAATCCTGCCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACACACAGTTTGGTTACTGGAGCCCATCTGCTGTGACAACTGTCCCCCACCCTGCCACATTCCTCAGCCCTGCGTGCCCACCTGCTTCCTGCTCAACTCCTGCCAGCCAACTCCGGGCCTGGAGACCCTCAACCTCACCACCTTCACTCAGCCCTGCTGT---GAGCCCTGCCTCCCAAGAGGCTGCTGATGGATGGCTACTTTGCTCAGTGCCCGACAACGAAGAATCCAGAAGCTGTCCCTTCAGTATTCACTTGCCTCAGTAGTTTGCCAGATGTTAAGGTAGACCAGATGACCC-AGATATGAAGAACTTACCTTTGGTTTTAATGGGGGAAAAAAAGAAAAGTATTTTTTATGGTTATTTAGCTGAAAAACCATTTGGTTCCTGTGGGCAGGTGAATGAGTTTTATTAGCAAAATACTGTTTCAATCTTTAAGACCTCAGATTAC-ATGTTCTTGATCATATTGCTTCCTGGCTCTTGTTTCTTGTACTGGGTATTTTCATAG--AAGAAAATTTCTTGGTGGGTTTTCCAATAAACTATATTTCTCTGGCAAGATGTGTCATTTGTTTATGTT-AGTTTTGGG--TATATTTCTTCCATTTTA----------------------------------------------------AAAAGGTAAAAACAGGATGATTATTTTAATCTTTTAAAGAAGACTCTATTGGCAGAATGAC--TAACATTCTTGCTA--CTACTAACATGG-----------------------CTTGCTAACTT-TTAACAGGTTCTCTTTCATGTTTGCCTTCTCTTCTCTCTTCTTCCTCAGACAAGTGCAATTTTGGTGTGAACCAACATTTATTTATCTACTCTTCACCA-GTAA-----ATTATTGATT----TAGTCCTTAAAACAGCACTAATGgataagaaaaaatgaagttttaag--cgttattcaacattctgaaagtcataaagttaattacttagaaaatcagaattcagcctcttgtatgtctgactctaaagcccaatttttcctaccacatcaTAGAACCTTCAATACTAATGAAACCAGAAGCTTAATGAGCACAGTTATGAAATAAACCCAAAATATGC---AAGAGAAAT--------------AAAACATGTAAGATTCTTTAACAAAATCC--ACATCGGATTATAATAGAAAAAGAGTACATTGGTTCATAGATTAAA s panTro1.chr19 42826543 2529 - 82489036 AACAACCTACC-CGGAATCTTTGCTTTCTGTTTAGTCAACA---AATTGCCAC--------------ATAACGAG-TATGTAATTTAAATTATACAATATTATCTGAAAGGATTTGTGCTGATCATGGACAGGTGTAGGAAGATGTTGGAATCTAGAATATTACACATTTGATATTA-------TCTAGT----------TCAATCTCT----------------------GGCTGACTTAAGTAAATAATGTTGTTTAAGGCATACCTCAAATGAATTTCAAT-CTAGTTCAAGATCCAAGGTATGAAAACAAATAAACATGCAAAGTAGGGAGTAAGTCAGTG-AAAAAGTGATTTTT----ATGAATGCCATAGTTCTAAATTGCATTGAGTCAGATTCCCTGCCAAAATCCATGATT-GTTCTGTGACTCTTGTGGTTTCTCCTTTTAATTCTTATTTCATCTTATTTTAAAGTATGTACACCATTCACGTGAAAATGAATCAAGGCTGAGGTGGTTTTCTTTTAGTGGTATATTCAACAAAGAATGGCCACTG----TGTGGATCCT--------TCCTTCCAATGA-ATTTATACTTTGATTCA-CCACAAGATTGGCATAACTTT--GAGAATAGAG--------------------------------ACTATTTTAGAAAA-------------------------------AAAAAATCCATAGAATAATACAACCTTGAGAAATTCACTACAGatttattaaaaataataaaaaGGAGTTTCTTCGTCCTGTACCATTCTA----CCACTTTGCTTGCTCAATAGAACCTGAATTATAAAATCACTAGATAATGCAAACATGTCCGAGATGCCTGTAGTCACATGAAACATTCATCTGTAAATAGCCATATTCTTGTTGACTTTATTGAGTTGAAAATGGTCCAGTTCATCATTTGAGTTACTCATTCTGAAATT-----AGTCATTA-----GAAATCACATTATCCGTAGTATTTTAAATTAAGAGGGA--AAAACAAGA---AGAGTTTGGCCTCCAAAATTACAGCTGAATTGTCACTTGGATTGATTACCCATAAAAGTCATATAAGGTTTGGCATG-CCAGAAACCTGTGAAGACAAAATGTGATGATCTTGTGACAAAAATGACAAGTCAATGAGTCAAAAATAT-GATTAA-CTTAATAAGAGCGGGAACTCTTAATGGAC--ATGTAAATGCCAAACTGATTAGAGAATCTCAGTGAAAAAGGGTGCCATAAAC-AAAACA---------GGAAGCCTTCCAGTTGGACCAATGCCCACTTGGGAGGGTATATAAGAGCCCTAACAAGAGAGGAGACATTTGTACCTCAGAATCCTCATCTAAGAAA----CTGAAAGCTAACCAGACGCCCATTGCCATGGATTGCTGTGCCTCTCGCGGCTGCAGTGTCCCCACCGGGCCCGCCACCACCATCTGCTCCTCCGACAAATCCTGCCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACACACAGTTTGGTTACTGGAGCCCATCTGCTGTGACAACTGTCCCCCACCCTGCTACATTCCTCAGCCCTGCGTGCCCACCTGCTTCCTGCTCAACTCCTGCCAGCCAACTCCAGGCCTGGAGACCCTCAACCTCACCACCTTCACTCAGCCCTGCTGT---GAGCCCTGCCTCCCAAGAGGCTGCTGATGGATGGCTACTTTGCTCAGTGCCCGACAACGAAGAATCCAGAAGCTGTCTCTTCAGTATTCACTTGCCTCAGTAGTTTGCCAGATGTTAAGGTAGACCAGATGACCC-AGATATGAAGAACTTACCTTTGGTTTTAATGGGGGAAAAAAAGAAAAGTATTTTTTATGGTTATTTAGCTGAAAAACCATTTGGTTCCTGTGGGCAGGTGAATGAGTTTTATTAGCAAAATACTGTTTCAATCTTTAAGACCTCAGATTAC-ATGTTCTTGATCATATTGCTTCCTGGCTCTTGTTTCTTGTACTGGGTATTTTCATAG--AAGAAAATTTCTTGGTGGGTTTTCCAATAAACTATATTTCTCTGGCAAGATGTGTCATTTGTTTATGTT-AGTTTTGGG--TATATTTCTTCCATTTTAAAAAGGTAAAAACAGGAAACTTAAAGTATaataaaaaaataaataaataaataaaAGGTAAAAACAGGATGATTATTTTAACCTTTTAAAGAAGACTCTATTGGCAGAATGAC--TAACATTCTTGCTA--CTACTAACATGG-----------------------CTTGCTAACTT-TTAACAGGTTCTCTTTCATGTTTGCCTTCTCTTCTCTCTTCTTCCTCAGACAAATGCAATTTTGGTGTGAACCAACATTTATTTATCTACTCTTCACCA-GTAA-----ATTATTGATT----TAGTCCTTAAAACAGCACTAATGgataagaaaaaatgaagttttaag--agttattcaacattctcaaagtcataaagttaattacttagaaaatcagaattcagcctcctgtatgtctgactctaaagcccaatttttcctaccacatcaTAGAACCTTCAATACTAATGAAACCAGAAGCTTAATGAGCACAGTTATGAAATAAACCCAAAATATGC---AAGAGAAAT--------------AAAACATGTAAGATTCTTTAACAAAATCC--ACATCGGATTATAATAGAAAAAGAGTACATTGGTTCATAGATTAAA s mm5.chr11 22419697 2416 - 121648857 GCCAA--------GGAATCTGTACTCTGCACTTAACCAAAAATGATTTGCCATCCAAATGTTTAAAAAAAAAAAA-TCTGTGCTTTCGATTGCAC-----TGGCTG-AGGGGTTTGTGCTGA------AGAGATATGTGAAGATGTCAGAACC------GTTGCACAGTAGGCATTGTTGTGTCTCTCCT----------TCAGCCTACAGGAAACACAAACACAAGCCAAGGCCAGCTGAAGTGAGGGATCTTGTAGAAGGCCT--CTCAATGGAATGTACTA-TCAGCCAAAGCTCCAAGGGGGGAGTACAAACACCTATGCA------GATGAAAGTCACT----AACATGATTTTTTTTAATGAAGTCCCTCATTCTACCTTGCATTG----------CCATCTAAACCCCGCCGTTAACTCTGTGAAGAGT--------------------------------------AAGTGTGTGTGTCACTCACATGAAAATGAATGACGACCAGGTTAGTTTTCTTTTCATGACATAG--AATCAAGGAAAGCCGTGGGTTTTTTGGTTTTTTTTTTTACTCTTTCCAATGATTTTTATACTTTGACTCATCTTTAAGAATAGTGAAGCTGTAGGAAAATAAAATACA--------------------------ATACCACCTTTGAAAGAT-------------------------CTCCAGACAAACAACAAAACAAAACAGCATT------TTTTTTAAACA---ATTAAAAAAAAAAAAAA-------CCTAGCACCACAACATTCTG----CCCCATTGCTTGCTCAGGAGACCCTGAATTCCATTATCAATAAATAA--AAGAAATGGTGGAAGTGTACATTGTCA-GTGAGATAGCTATAGATAAGTGGCCATGTTCTTGATGGTTTCATTGAGTGGAGAGGTATCCAATTGATCATTTGAGCTAATTTCTCTAGAACTTTTCCATACATGT-----GACATCATACAATGCATACTATTGAAAACTTAGAAG------AACTGAG---AAATTTTAAACCCTAAAAGTGCCCATGAGTTGTCACTTGAGCAAATTACACATAAC--TCATACAAGTGTGGGCATGCCCAGAATTCTGTAAAGGTAAACTGTGATGGTATTTTGAC-AAAATGGCAGGTCCATGAGTCAAAACTCC-AACTGA-ATTAATAAGGGCAGGTAGTTTTAATAGAC--AAAAAAATGCCAAACTGATTAGATAATCTCAGTGGAATAGGGTGTCACAAAC-AAAACAGGACAGGAGGGAAGCCTTCTGATTGGACTCATACCCACTGAGGAAGGTATAAAACAGTCCAGAC-TGAGAGGACACATTTGAACCTCAGAAACTTCATCTTTGAAA---GACCAAAGCCAAGCAGAC-TCCAGCACCATGGCTTGCTGTGTTGCCCGCTGCTGCAGTGTCCCCACCGGCCCTGCCACCACCATCTGCTCCTCAGACAAGTCCTGCCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACACACCATTTGGCAGCTGGAGCCCACCTGCTGTGACAACTGCCCCCCACCCTGCCACATCCCTCAGCCCTGTGTGCCCACCTGCTTCCTGCTCAACTCCTGCCACCCAACCCCAGACCTGCTGACTGTCAACCTCACCACCTATGTGCAGCCAGGCTGTGAGGAGCCCTGTGTCCCAAGGTGCTGCTGACCTGTGGCTCCCTTGCTTGACGCCTCATACTGAAAACCCCAGGAACTGCCCAACCACCACCTGCTTGTCTCAATAGTTTTCACAATGTTAAAATAGG-CAGATGACCTAAGCCATGGAAACCCTACTTTTATTTTTAA---GGGCAAGAAATCAAGGTTTTGCTTAT-GTGATCCGGATGAATAGCCATTTGACTGATTTCAACAGGTGAACATCTTCCATTATGAAAGTGCTATTGAAATCTTTAAGATTTCAAACTATGGGGGTTTGGGCCATGTTGCTTCTGGGATCTCATTTTCTGTATTGAGTATTTTCAGAGGCAAAATAATCTCCTGATGGGTTTTCTAATAAATTGTATTTCCCTGGCCATAAGTGTTCTTTATTTATGTT-AGTATTTGG--GACACATTTCTTGTTTAA---------------------TAGATTATCTT--------------------TATCATTATTATTATTATTATTATTATTATTATTAATTGAAGGTT-------CAAAATGAAGGCAGCACCAGAGCGAGCTTGCTAGCTCGC-----------------------CTTCCTGATTTGTTATCAG----TCTTTACTGTCCATCTTCTCTCCTTTCT-----CTCAAAC------------------------------------------TCATCA-------------------------AATCCTCAAAACAACACTATATAATGATATGGGAT-ACGTTGTCGGTTTGTTATTAAATGTTCTCAATATTATAGAGTTAATTACTAAGGCAAGCAGAATTTAACCCCTGGCGTGTCTGACTCAAAAGACCAATTCTTTC--CCACATCACAAAGCCTCGAATACAAAGAAAAGAAGAAAC-TAGTCAG--CAGCTTTGACACAGATTCAAAACATACCTGAAAAAAAATTTAAAAATGAAAAAAAAAAATGTAAGATTCCTCAACAAAATCATGATGTCCAATTTTGACTGAAAGGGGGTAAATCGGCTC--TAATCAAA s rn3.chr10 22212510 2412 - 110733352 AACACCTCACCGAGGAATCTGTACTCAGTGCTTAATCAAAAATGATTTGCCATCCAAATT-------TAAAAAAA-TCTGTGATTTCAATTCCAC-----TGGCAG-AGTGGTTTGTGCTAA------GGAGATATGTGACGATGTCAGAACC------ATTGCACATTAGGCATTGTTGTGTCTCGACT----------TCAGCCTAC-------AGGGAGATAAATCAAGGCCAGCTGAGGTGACAGATGTGTTAGAAGGCCT--CTCAAAGGAATGTACCA-TCCAT------TCCAAGGGAGTAAAACAAACACATATGCA------GATGAAAGTCCCT----AACATGATTTTT---AATGAAGTCCCTCGTTCTACCTTGAATTG----------CCATCTAAGACCTGGTGTTAACTCTGTGAATCACGTGGTTTCTCTGATGGGATCCCATTCTGCCCTGTTTTAAAGTGCATGTGTCACTCATGTGAAAATGAACGATGACTAAGTTAGTCTTCTTTTCATGACATCT--GATCAAGGAGAGCCATGG--------GATTTT---TTTACTCTTTTCAATGTTTTTTATTCTTTGGCCTA-----------------TCTTT--AAGAATAGAG--------------------------------AA-GCTGTGGAAAAATAATGTAACACCCCCCTTTGAAAGGCCTCTAGACAAACAACAAAACAAAACAACAGTG-----CATACTACAGATTTATTAAAAAAGAAAAAAA--------CTAACCCTGCAACATTCTG----CCTCATTGCTTGCTCAG-AGAGCCTGAATTCCATCATCAGTGAAGAA--AGGAAATGTTTGAAGTGTACATTGCCAGATGAAATATTAATAAATAAGTGACCATATTCTTGATGGTTTCGTTGAATGGAAAAGTATCCAATTAATCATTTGAGCTAATTTCTCTAAAATGTTTTAATACATGA-----AACATCATATAGTGCACACTACTGAAAACTAAGAAG------AACTGAG---AAATTTTAAACCCTAAAAGTGTCCATGAGTTGTCACTTGGGCAAATTACACATAAC--TCATACCAGTTTGAGCATGCCTAGAATTCCATAAAGGTAAACTATGATGGTCTTATGAC-AAAATGGTTGGTCCATGAGTCAAAACGCCAAATTGA-ATTAATAAGGGCAGGAACTTTTAATAGACAAAAAAAAATGCCAAACTGATTAGATAATCTCAATGGGAAAGGGTGTCACAAACAAAAACAGGACAGGAGGGAAGCTTTCTGATTGGACTCACACCCACTGGGGAAGGTATAAAACAGTCCAGAC-TGAGAGGAGACATTTGAACCTCAGAAACTTCATCTTTGCAAG-AGACTAAAGCCAACCAGAC-TCCAGAACCATGGCTTGCTGTGTCACCCGCTGCTGCAGTGTCCCCACAGGCCCTGCCACCACCATCTGCTCCTCTGACAAGTCCTGTCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACACACCATTTGGCAGCTGGAGCCCACCTGCTGTGACAACTGTCCCCCACCCTGCCACATCCCTCAGCCCTGTGTGCCCACCTGCTTCCTGCTCAACTCCTGCCACCCAACCCCAGACCTGCTGACCGTCAACCTCACCACCTATGTGCAGCCAGGCTGTGAGGAGCCTTGCACCCCAAGGTGCTGCTGACCTGTGGCTCCCTTACTCCTCACATCATAATGAAAACCCCAGGATCGTCCCAATCACTGTCTGCTTCTCTCAGTAGTTATCACAATGTTAAAGTAGG-CAGATGACCTAGGCTATGGAAACCCTACCTTTGTTTTTAA---GGGAAAGAAATCAAGACTTGGCTTAT-GCAATCTGGATGAATGGTCATTTGATTGATTTCAGCAGGTGATCA---TCTATTATAAAAGTGCTATTGAAATCTTTAAGATTTTAAAGTATGGGGGTTTGGGTCATATTGCTTCTGAGGTCTTATTTTCTGTATTGAGTATTTTCAGAAGCAAAATAATCTCCTGATGGGTTTTCTAATAAATTGTATTTCCTTGGCCGTCAGTGTTCTTTATTTATGTT-AGTGTTTGGGATATATTTCTTGCGTTTAA---------------------TAGATTAT----------------------------------------TTATTATTGTTATTATT----------------------ATTGT--TATCATCATCGTTA--TTATTATCATAGAATGTTCCAAATGAAGGCACCACCTTCCTAACTTGTTGTCTG----TCTTTGCTGTCCATCTTCTCTCCTTTCT-----CTCAAAC------------------------------------------TCAATG-------------------------AATCTTCAAAACAACACTATATAATGATATGGGCA-AAATTGTTAG---CTTATTAAATGTTCTCAAAGTTATAAAGTTTGTTACTAATGCAAGCAGAATTTAATCCCTGGCATGTCTGACTCAAAAGGCCAACTCTTTC--CCACATCATAAAGCCTTGAATACAAAGAGAGGAAGAAAC-TAATCAG--CAGCTTTGACACAGATTCAAAGCATGCCTGGAAAAATGT-AAAAAATGAA---AAAAAAAGTGACATTCCTCAACAAAATCATGACATCCAATTTTGACTAAAAGGGGGTAAATTGGCTC--TAATCAAA s canFam1.chr9 14348289 2511 + 53642819 AACACCCATCCAAAGAATCTGTACTTCATGTTTACTCAACAGCAACTTGCTAT--------------CCAACAAATTATGTAATTTAAATTCTAC-----TAACTGAATAGTTTTGTGCTGATCAAGAGGAAGTATGTGaaaatgctggaatc-tggatgttacatattagagattattcagt-ccaagttcctcatctgtcaacctac-------agaatggcaaatcaaggccaactaaggtgaagAATGATGTATAAGGCATTCCTCAAAAGAATTTACAACCCAATTGAAGATCCAAGGTGTGAAAACATTCACA------------GTAGGAAGTCAGTGAAAAAAAGGATTTCT-------------ATAGCTCTAAATCACATTGGATTGGATCCCCTTCCAGAAGCCACTGTT-GTTTTATGAACC-TATGACTTCTCTTTTTAGTTCTTGTTTCAATTTATTTTAAATTAAGTATAGCATTCATTTGAAAATGAATAAAGA-TGAAGTGATTTTCTTTTACTGGTACATTTAACAAAGGTCAGCAACCG----GGTGCATCTT--------TCTTCCCAAAGA-ATTTACATTTTGACTCA-CTATGAGATTGGCATAACTTT--GAGAATAAAAttcttttttttttttttttttttttttatttttttttttttGAGAATAAAATTCTTAA-------------------AAAAAAGTATAAGGGTAATACAACCTTTGGAAACTTGCAATAG----ATTAAAAATAATGAAAGGGG----TTTCATCTTATTCCATTCTGGTTATCACCCCACTTGCTCAATAGAACCTGAATTATATCCTCAATAAATAAGGTAAATATGTCTGAGGTGCATATAGCCATATGTAACATTCATCTGTAAGTAGCCATGTCCTTACTGACTTTATT---TAGAGAATGGTCCATTTAACCGCTTGAGTTACATGTACCAAAATT-----AGTAATTAAAGATGATATCATGTTATGCATACTATTTTAAATTAAGGGGGAGGAAAACAGGGAGAAGAATATAGCCTCTGAAACTATAGCTAAATTTTCTCTCAGACTGATTATCCATAAT--------CAAGTTTGGCATT-CCAG-ACCCTGTGAAGATAAAATGCAACCATCTTATGACAAAAATGACAAGTCAATGAGTCAAAAACAT-GATTTACCTTAATAAGGGCAGG-ACTCTCAATGGAC--AAGTAAATACCAAACTGATTAGAGAATCTTAGTGAAGACAGGTGGGATAAACAAAAATGGGA------GGAAGCTTTCTGGTTGGACCAACACCCACCAGGGAGCATATATAAGAGCCTCAAAGCAAGAGGAGACATTTGTATCCCAGAAACCTCATCTTTGCAAGAAACCAGAAGCAAACCAGATTCTCAACACCATGGCTTGCTGTGTTCCCTGCTGCTGCAGCGTACCCACTGGCCCCGCCACCACCATCTGCTCCTCTGACAAATGCTGCCGGTGTGGAGTCTGCCTGCCTAGCACCTGCCCACACACGACTTGGTTACTGGAACCAACCTGCTGTGACAACTGCCCCCCACCCTGCCATATTCCTCAGCCCTGTGTGCCCACCTGCTTCCTGCTCAACTCCAGCCACCCTACCCCAGGCCTGGAGACCCTCAACCTCACAACCTACACTCAGCCCTCCTGT---GAGCCCTGCATCTCAAGCTGCTGCTGAATGATGATTGCTTTGCTCCATGGCTGACAATGAAGAACCCAGAAGCTGTCTATTCAGTATTCACTTGCCTGGGCAGTTTATCATTTGTTGAGGTAGACCAGATGGCCC-AGATATGGAAAGCCTACCTTTCATTTTAAT--GGGAAAAAAATTGAGACATTTTTTATGGTTATTCGGCTGAATAATCATTTGGATCATTTGGGCAGGTGAACATCATCTATTATCAAAATACTACTAAAATCTGTCAGAGCTCTGACTAT-ATTTTCTTGGTCATGTTGCTTCTTGGATCCTATTTCTTATACTGGATATTTTCATAGAGAAAAAAAT-TCTTGATGGGTTTTCCAATAAAC--TATTTCTCTGGCAAGATATGTTGTTTGTGTACATTCATTTTTTGG--TATATTTCTTTAATTTAA---------------------------------------------------AAAAAGGTAAAGATAAGATGATTATTTTATTTTTTTTTAACTGATT-----AGAAGAATGAT--TGGAACTA--GCTAGCTTCCTA----GG-----------------------CTTCCTAACTT-CAAATTGGTTATCTTTTATG------TTCTCCCCTTTTC-----CTCACCCAAATACAATTTGGAGGTGAGACAGTATTTATTTACCTATATTTTGCTGCGTAAATCACATTATTAATTCACATAATCCTTAAAACATCACtcatagatgagaaaaatg-aagctgtaag--aattgctcaacattctcaa--------agttacttagtaagaaatccagaattcaggtcttcatatgtttgactttaaagcccaattctttctaccaaatgacagagcctcCAATACTAA--GAGCCAGAAGTTGAGTGAA--CAGGTAGGACATCAACTTAAGACATGC--AAGAAAAAAT--------------TTTAAATGTAAGAATCTTTAGCAAAATCATCATATCTGATTGTAATAAAAAAAGGATCTATTGGCTCACAGATTAAA a score=63065.0 s hg17.chr17_random 2562036 210 + 2618010 ATTGGCAAGTATTCAATTCTAAAATCTGGGC-ATTTTGAAGGTGTACC-------------TATTTCAACTTCATTTTCTCTTAGAGAGAACTCAAAGTGGTCAACTCTAGTAACAAGGCACCAGGGACATACCTTTATTTGCCACCATACTCAGCACAGATGTTCTACCACAGTAATCAATAGAATGCCA-ATACTTTTCAGG----TGTCTCAGGTTGAGAGCTAAA s panTro1.chr19 42829072 210 - 82489036 ATTGGCAAGTATTCAATTCTAAAATTTGGGT-ATTTTGGAGGTGTACC-------------TATTTCAACTTCATTTTCTCTTAGAGAGAACTCAAAGTGGTCAACTCTAGTAACAAGGCACCAGGGACATACCTCTATTTGCCACCATACTCAGCACAGATGTTCTACCACAGTAATCAATAGAATGCCA-ATACTTTTCAGG----TGTCTCAGGTTGAGAGCTAAA s mm5.chr11 22422113 188 - 121648857 ATTGACAAATATTCAGCTGTAAGAGCTGGGT------------------------------CACTTCAATCTCATTTTTGCTT--ACAGAACTCAGAATGGTCAACTCTAGCATCAGGACA-CAAACACATG-CTTTGTTTGCCCCCCCTGTTATCACAGAGGTGATAGTCCAGTAGTCAATAGGATATCAGATGCTCT---GG----GATGACAGATTGAGAGCTAAA s rn3.chr10 22214922 163 - 110733352 ACTG-CAGATATTCAGCTCTAAGAGCTGGGT------------------------------TGCTTTAATCTTATTT------------------------TCAACTCTAGCGTCTGGACA-CTAACACATG-CTTTGTCTGCCACC--TGTTATCAGAGAGGTGATAGACGCGTTGTCAGTAGGATGCAAGCTGCTTT---GG----GATGATAGATTGAAAGCTAGA s canFam1.chr9 14351007 226 + 53642819 AGTAGCAGATATTCAGTTCTAAGATCTGGGTCATTTAGTGGGCCTACCAATTTTGACTTCACTTTTTGACTTCACTTTCCCTTAAGGAGAATTTAAGTGGA--AACTCTAGAATCAGGGCACTAGGAATATATCTCTACTTGCCACCATCCTCTGCACAGAAGTTCAACCTCAGTGATCAACAAAATGCCA-AAACTCTTCAGGTCATGAGCTAAGAAGTAGAGCTAGA a score=-2754.0 s hg17.chr17_random 2562246 5 + 2618010 ACTCT- s panTro1.chr19 42829282 3 - 82489036 A--CT- s mm5.chr11 22422301 3 - 121648857 G--GT- s canFam1.chr9 14351233 5 + 53642819 -GTCTT a score=25817.0 s hg17.chr17_random 2562251 129 + 2618010 GATTACGTATGCTTTAATTCG----------TTACTTAATTTTATCAACCTACTTAATTTTATCTCATGAAGATTTTTCTTTTCCAAGCCTAG---AGAGAACAAG--tat----------atattata-tatataatacatccaatacatttat s panTro1.chr19 42829285 131 - 82489036 GATTACATATGCTTTAATTCG----------TTACTTAATTTTATCAACCTACTTAATTTTATCTCATGAAGATTTTTCTTTTCCAAGCCTAG---AGAGAACAAGtatat----------atattata-tatataatacatccaatacatttat s mm5.chr11 22422498 139 - 121648857 GATATTGGCTATTTAAACCCA----------TTAGCTGATTTTATGAACATACATAAATTTATGTGATAGAGAAAACCCTTTTCTGAGCCTAC---AAAGAATATGCGTATTGGATGTGTAAAGTTATACTATATAAGACAC---ATACACATAT s canFam1.chr9 14351238 137 + 53642819 GATTAAACATGATTTAATCTATGCCTTAATTTTACTTATTTTTACCAACCTACTTAATTTTATCTTGAGCAAATTATCCTTTTTCCAACCTTACTTAGAGAatacc--tat----------ataatata-tatttaacacatatcatg-----at a score=4161.0 s hg17.chr17_random 2562380 30 + 2618010 gtaacacatata-aatatatgtgtgtatgta s panTro1.chr19 42829416 30 - 82489036 gtaacacatata-aatatatgtgtgtatgta s canFam1.chr9 14351375 29 + 53642819 gt-atacatgtataatacatgtata-atgta a score=20287.0 s hg17.chr17_random 2562410 88 + 2618010 tatctatacacaatacatatataAAGA-----------------------------CACAAGTCAAAATCTGAAAATGCATTGAAATAAAACCACAAGAAGACATGCAAGAAACAGA---------- s panTro1.chr19 42829446 88 - 82489036 tatctatacacaatacatatataAAGA-----------------------------CACAAGTCAAAATCTGAAAATGCATTGAAATAAAACCACAAGAAGACATGCAAGAAACAGA---------- s mm5.chr11 22423168 116 - 121648857 TAACTAAATAAAATTTAAAAAAAAAAAAGAAAAAGAAAGAAAACGGAGATGAAAGTCACAAGTC-AAATCTGAAAAAGCCCTGAGACAAAGCCAAAAGAATGTGTGAGAAAAAAAAA---------- s canFam1.chr9 14351404 95 + 53642819 --tatatgtgtcattcatatacaAAAG-----------------------------CACAAGTCAAAATCTGAAAA-ACATTGAGCTAAAACTGAAAGAATATATGCAAAAAAAAAAAAAAGTCAGG a score=65633.0 s hg17.chr17_random 2562498 341 + 2618010 GTAGG---ACAAGGAAGGGGAGAAGCAAATGCTTTTTAACAAACTTGTTTTAAAATGTCCTCAATGTACCTGTTAGTGTCTTGAGAGAGAAATTTCTCACGGGATTCCATAGGCTTTTTACAGCTCAACCTTAAATGAACAGAACTTAGCAGCCATGGAGTCTATGGGACACTACAGAGGATATTGTCAACAAGAGATCTAGTCCATTCactcattcatttgtcc-atatttcctgagtgtttgccctatgtcaggcatcatattgatgccaggagtaaaaagataaaagaaatgctattacctcaagtctcaagtgccctcaagtctctcccaaatctagtgaa s panTro1.chr19 42829534 341 - 82489036 GTAGG---ACAAGGAAGGGGAGAAGCAAATGCTTTTTAACAAACTTGTTTTAAAATGTCCTCAATGTACCTGTTAGTCTCTTGAGAGAGAAATTTCTCACGGAATTCCATAGGCTTTTTACAGCTCAACCTTAAATGAACAGAACTTAGCAGCCATGGAGTCTATGGGACACTACAGAGGATACTGTCAACAAGAGATCTAGTCCATTCactcattcatttgtcc-atatttcctgagtgtttgccctatgtcaggcatcatattgacgccaggagtaaaaagataaaagaaatgctattacctcaagtctcaagtgccctcaagtctctcccaaatctagtgaa s canFam1.chr9 14351499 333 + 53642819 GCAAGGAAGCAAGGAAGGGACGAAGTAAATGCCTTTCAATAAACATGTTTCTAAATGCCCTTAGTGTGCCTGCCAGTCTCTCCAGAGAGGGATTTCTCAGAGGATCTCACAGGCTTGTTAGTGGTC-----TGAATGAAGAGAACTTAGCAGCCACAGGGCACATGGAACACAACCTACAATACTGCCAATAAGGGATTTAGTATATCCactcatttgtttggccaatatttcacgagtgcttcccctatgccaggcaccatatctgtgctagaagtataaagataaaagaaatgttattac-------ctagagtgctctcaagtttctttcatatctggtgag a score=100.0 s hg17.chr17_random 2562839 1 + 2618010 g s panTro1.chr19 42829875 1 - 82489036 g a score=79280.0 s hg17.chr17_random 2562840 507 + 2618010 aagaaagacaagttatcataataataa---------------------------------ttgcaatgctgag-ggattctgctgtgactgggaggtgagcagcatggcatgcaagcatacagaaagaataactaaaaccctgatttggtgattcagtgtcaaaggtgagaaatagctacggaaagcctctgagctatccagtctaagctttaaaagatgaataggcagcaggagag----------gtagggaacagttgttccagacagaatagcagcttaataaatcatggaggcagcggaaaggttggtgtctttaagccacaggaggtagttgggaatgactggatgaacaatgcattgaagagggtgaggcagagaaga---cagaaatgcaaagacccagaCATAAGGGGCTCCTCAAAGCAAAGGGGTTTGGACTGAAACTTTGAAGCAATGAAATATTTCAAGCAAGAGACCAATATAATCATGTTTTGCTTCTGTCTCTTTTCATTATTAATCTTTGATTTACATCTGCACTGTCCCAGATCCC s panTro1.chr19 42829876 507 - 82489036 aagaaagacaagttatcataataataa---------------------------------TTGCAATGCTGAG-GGATTCTGCTGTGACTGGGAGGTGAGCAGCATGGCATGCAAGCATGCAGAAAGAATAACTAAAACCCTGATTTGGTGATTCAGTGTCAAAGGTGAGAAATAGCTACGGAAAGCCTCTGAGCTATCCAGTCTAAGCTTTAAAAGATGAATAGGCAGCAGGAGAG----------GTAGGGAACAGTTGTTCCAGACAGAATAGCAGCTTAATAAATCATGGAGGCAGCGGAGAGGTTGGTGTCTTTAAGCCACAGGAGGTAGTTGGGAATGACTGGATGAACAATGCATTGAAGAGGGTGAGGCAGAGAAGA---CAGAAATGCAAAGACCCAGACATAAGGGGCTCCTTAAAGCAAAGGGGTTTGGACTGAAACTTTGAAGCAATGAAAGATTTCAAGCAAGAAACCAATGTAATCATGTTTTGCTTCTGTCTCTTTTCATTACTAATCTTTGATTTACATCTGCACTGTCCCAGATCCC s canFam1.chr9 14352016 492 + 53642819 AAAACAGATAAGTTGTTATAATCACAACACATGTGTTCTACATACAGTGTATGAATATATTTATAATGCCATGTGGTTCCTGCCGTGACAAGG-TGTGAGCAGCAAGGCATGCAAGCACACAGAGGAACTAAT-----CCCAGATTTGGTGATTCAGTGTCAGGGG-GAGGGAGAGTTATGGAAAGCCTCTGAGCTCTCCAGGCTAAGCATTGAAAGATGACAAGGCAGGAGAGGTGGTGTGTGTGTGTGGGAGGGTGCTGTTCCAGACACAACAGCAGCTTACTAACTCATGGATTGAGCG---------------------CACTGAA-------------------------AATGGAGAGAAGAGGGTAAGGGGAGGAGGAAAGAAGAAATGCAGAGACCCTAAGGT-TGGGGCTCCCTAAGCCAAGGGCTTTAAGACTAAAACCTATAAGCAAAGAGAGATTTGAAGCAAGAAACTAA--CAATCATATTT------TGTTTCTTCTTATTATCAACTTTCAATTTATGTCTTCACTATCACCGATACC a score=30220.0 s hg17.chr17_random 2563347 151 + 2618010 TCCATTGACTATAGAAAGATATAATTAAAACTGGACTTCTTGGAtgtgtgagtgtgcgtgtgcgtatgtgtgtgtgtgtCTAGATTTTTAGCACCCCGAAAATCTACCATCTCATCAAGAATCACCATGTTTTTCCTACATTCACTTAAAG s panTro1.chr19 42830383 151 - 82489036 TCCATTGACTATAGAAAGATATAATTAAAACTGGACTTCTTGGAtgtgtgagtgtgcgtgtgcgtatgtgtgtgtgtgtCTAGATTTTTAGCACCCCGAAAATCTACCATCTCATCAAGAATCACCATGTTTTTCCTACATTCACTTAAAG s canFam1.chr9 14353265 131 + 53642819 CCCATTGACTATAGACAG-TATAATTAAAACTGG-------------GCAAGTTCTTGTGTGTGTATGTGTATG------TAGATTTTCAGCAACTTGAAAATCTACCATCTAATCAAGAATCACCATGCTTTTCCTGCATTCACTTAAAG a score=161443.0 s hg17.chr17_random 2563498 668 + 2618010 AAAAAAGATACGCGTTGTTTTTAAAAATAAAATGCTTAGTATCTCTGACACATAGTTTAAACTTCCATTTCTAACCACATAAAA--GGTAGCTCAATCCCAATAGGTCCTATATTTAGTTTTTAACACACTGGCTCCCGAACCatctaaggcaaatcatctcacctctctatgaatcactgtcatcatttataaacaaaggagagtaattctcaggtctcttagaccactgcagagaaaatacattttaataaagtgctGCAAGTCTTGTCAATAAAAGAGAAGAGCTTATTATAATAAACTTGTTGCATTACAACTGTTTGTAATCTGT-----AACCTT---GTCTTATTTATGATTAGAGAAACACAATGTGCTGCATA-AACAGTAATAGTTGCTCTAAGCTTTTATGGTGAACTCAAAGTAATATTGTATCCCAGGTAAGAAGCTGATAGCTTTCTGCCATGAAATTCTAATCCTGAGGGTCTGCAAGCCATGTTTCCTTTGTAATGTTTCCC--------TCAAAATA--ATTTTTTCTTTTATTTTTTGTCTT------TTACTCTTT-TTCTTTCCTATTATAATGTATAATAGCAGCAGCTTATAATAATATGTTATGTGTATGAAAAATtcttccaccaaactgtaaacttcatgagggcaaggatggtgcctatcttgtttattg s panTro1.chr19 42830534 668 - 82489036 AAAAAAGATACGCGTTGTTTTTAAAAATAAAATGCTTAGTATCTCTGACACATAGTTTAAACTTCCATTTCTAACCACATAAAA--GGTAGCTCAATCCCAATAGGTCCTATATTTAGTTTTTAACACACTGGCTCCCGAACCATCTAAGGCAAATCATCTCACCTCTCCATGAATCACTGTCATCATTTATAAACAAAGGAGAGTAATTCTCAGGTCTCTTAGACCACTGCAGAGAAAATACATTTTAATAAAGTGCTGCAAGTCTTGTCAATAAAAGAGAAGAGCTTATTATAATAAACTTGTTGCATTACAACCGTTTGTAGTCTGT-----AACCTT---GTCTTATTTATGATTAGAGAAACACAATGTGCTGCATA-AACAGTAATAGTTGCTCTAAGCTTTTATGGTGAACTCAAAGTAATATTGTATCCCAGGTAAGAAGCTGATAGCTTTCTGCCATGAAATTCTAATCCTGAGGGTCTGCAAGCCATGTTTCCTTTGTAATGTTTCCC--------TCAAAATA--ATTTTTTCTTTTATTTTTTGTCTT------TTACTCTTT-TTCTTTCCTATTATAACATATAATAGCAGCAGCTTATAATAATATGTTATGTGTATGAAAAATtcttccaccaaactgtaaacttcatgagggcaaggatggtgcctatcttgtttattg s rn3.chr10 22215674 587 - 110733352 AAGAAAAAAATCCTTTATTTTTACAAATAAAATTTT----------------------------------------ACAGAAAT--GGTAGATTGCTGCCACTGGGTCCTACATTTAGCCTTTAGCGAGTGAGTCAGCAGATGATCTAAGG---ATTGTGTCACCTTTCCAGCTCTCACTAGCTTCCCTGGT-----AAGTGTAGTAGCTTCCACGTCTTGTGGGCCTCTGAGGAGAAAATGCATTC--ATAAAGTACTGCATCTCTGCTCAGAAAGAATGACG-----GTCATCATAGATTTATCATTTAATAACTGTCT-CGGTCTATTAATATACCTTTAAATCTCATTTATGACTAGAGAAACATGAAGTCCTACATA-CACAATAATA--------AGTCTTTTATTGTAGATACGAAATAACAGCGT----------------------CTTTCAGCCATGAAAATCTGAT------GGCCTGCACACCATTTTTTTTCC----TGTCTCCA-GAAAATGTCAGAGTAACATCCTGCCCTTTGTTATTTGCTGTAAGAACGTAATCTTT-CCTTCCCCCATTATGATTCATAATATCAGCAATGTATAA--------TACATGTATCACAAGCCTTTCCAACAGACTGTAAATTCCACAAGGACACAGATAAAGTTTATTTTGCTTGCTG s canFam1.chr9 14353396 663 + 53642819 GAAAAAGGGGCTCTTTGTTTCTAAAAATAAAATGTTTAGTATCTCTGACACATACTTTAAACTTACATGTTAAACCACAAAAAAAGGGTAGCTCAATTTCAATAGGTTCTATATTTATTATATAACAAGTTAGTCACCAGGCCatctaaggcaaattagctcacctctctaggattcactgtcttaatttacaaacaaaggagAGTTATTCCCAGGTCTCTTAGACCATGGCAAAGAGAAGAAATTTTAATAAAGTGTTGCAAATCTTTTCAATAAGAGAGATG--TTTATTATCATAAGCTTATTATTTTACAACTGTTTCTAATCTAT-----AACTTT-ACATATTATTTGTAATTATGGAAACATAACATTCTACACAGAACAGTAACAATTTCTCTAGCCTTATAAGCCTGACTCAAAGTAACACTGCATTCTAAATAAGAGAGCGATTTCTTTCTGCCATGGAATTATG----TGAGAATCTGCAAAC------TCCTCTGTAATGTTTTTCTTAAAATGTCAAAATA--AT--TTCCTTCTGCTTATAATTTT-----TATACTCTTGAAACTCTTCTACCATAATGTATAACAACAGTAACTTATAATAA-----TATGTGCATAATAAA-Ccttccatcagactccaagttccatgacagcaagaatgatgtctattttgttcactg a score=16742.0 s hg17.chr17_random 2564166 78 + 2618010 ctataaatccaacatttatcacagtgactagcacatagtaactgctcagtaaatgtctgttgaatTACTTTTTAAATA s panTro1.chr19 42831202 78 - 82489036 ctataaatccaacatttatcacagcgactggcacatagtaactgctcagtaaatgtctgttgaatTACTTTTTAAATA s canFam1.chr9 14354059 78 + 53642819 ctgtgtatccaacatttatcacagtgcttggcacgtgggaactgcccaataaacgtccattaaatTATTTTTAAAATA a score=249637.0 s hg17.chr17_random 2564244 830 + 2618010 ATAAGTGAAATACTAATCAGTTCTAAGTAAAAGGGTGCACACTTCGGCAGGCATTCATACAAAGATAAATCTGGGGAAAGTCCAGGAACCAGAAGATATCATGAATTCTCCCTTTCAATC-AGAGCCATA-GGGAGCTTTTCAAATTTTTAGGTTTGTTAA-----TTTATATGCCAACCACTTTCTCTAATCGTAGATGTGAttatttattt---atttatttatttGTATAAA-----------CTAATATAAAT-----------GTTTGCTCTTTCCTGTAAGGTTGCTCTCTTACT---------TACCTTCATCTCATTTTCTTTTCTTCTTTTGACTATGTTTCTTTTATCTTTACCTTGCCTTGAATTTCATCTGTAATTTGTTTCAATCATGATAATAATTTATTTTTGCATAGCATTATATGGTTGTCCATGAGCTTTCA-CCCTTTttatcacatgtgaacctcacaataatc-ttctaagtggaggaatatgcatgctattaccctgatttcgcagagaaaaaggatgaagctcctaaaagtgaattacttaccataacgaggaagataaccagcagcaccgggaacagtca---agagctattctgactcctcaggtg-gtcctcttgactacACGTCCCCATTCCCAAAACATACAAACATGC-ACACCACAATGCACCACTCAACAGGTGTGCCTAAAAGAGGAGGTATGAAGAATGTGAGAAGAACCATGGCTTGCAAGAAGCATGAGACCAAGCTGAGCGGAAATGGTTCGAGGTGTATAAATGATATTGGCCACAAGCCCACCTTGTGCTCCCTCTTAAACACTGAACTATGCCTGCAGTCTAAATAGCGTACTGGTACT s panTro1.chr19 42831280 829 - 82489036 ATAAGTGAAATACTAATCAGTCCTAAGTAAAAGGGTGCACACTTCGGCAGGTATTCATACAAAGATAAATCTGGGGAAAGTCCAGGAACCAGAAGATATCATGAATTCTCCCTTTCCATCTAGAGCCATAGGGGAGCTTTTCAAATTTTTAGGTTTGTTAA-----TTTATATGCCAACCACTTTGTCTAATCGTAGATGTGa----ttattt---atttatttatttgtataaa-----------ctaatataaat-----------GTTTGCTCTTTCCTGTAAGGTTGCTCTCTTACT---------TACCTTCATCTCATTTTCTTTTCTTCTTTTGACTATGTTTCTTTTATCTTTACCTTGCCTTGAATTTCATCTGTAATTTGTTTCAATCATGATAATAATTTATTTTTGCATAGCATTATATGGTTGTCCATGAGCTTTCA-CCCTTTttatcacatgtgaacctcacaataatc-ttctaagtggaggaatatgcatgttattaccctgatttcgcagagaaaaaggatgaagctcctaaaagtgaattacttaccataacaaggaagataaccagcagcaccgggaacagtca---agagctattctgactcctcaggtgagtcctcttgactacACGTCCCCATTCCCAAAACATACAAACATGC-ACACCACCATGCACCACTCAACAGGTGTGCCTAAAAGAGGAGGTATGAAGAATGTGAGAAGAACCATGGCTTGCAAGACGCATGAGACCAAGCTGAGCGGAAATGGTTCGAGGTGTATAAATGATATTGGCCACAAGCCCACCTTGTGCTCCCTCTTAAACACTGAACTATGCCTGCAGTCTAAATAGCGTACTGGTACT s mm5.chr11 22424741 755 - 121648857 ACACATGAAATATTCATTTTCCCTAAGCAAGCCAATGTGCAATTTAGCAGCTATTCATTCAGTGATAAATC-----------------------------------------------TC-----------TGAAGATTCTTGAGTATTGCAGTAACTTAG-----TGTATATGCCAGCCATTTTCTCTGCTCTCGGGTGTTAACACTTATTTTTATTTTGTTGACTTAC-TTAA-----------CTAGCATGAACTCTGAAATCAGGCCCCCTGTCTCACCTGAGGTGTCCCTCTTACT---------TGTGTT--TCTCTTCTCCTCCTCCTTCTGTGAC--TGTTTCTTTTATCTTTACTTTGCCTTG--TGTGATCTGCACCTTATTTCAATCATCATGGT-GCTCATCTTTGCACA---------------CCATGGACTTTAAGCTCTTTTCATCTCATGTGAGGCTCACAATGCTC-CTTTAAGTAAGAGAGTGTACGTGCTACTGCCCCTCCTTTGCAG---AAAAGGGCAAGTTTCCCAAAAGTGAACTGCCTACAATAACAAGGTAGGTAACCAGTACTCCTTGGACCAATAATACAGAGCTCCTCTGCCTCCAAACATG-G-CCTCTTGATTCTATATGCCTGCTTTCCAAATATACAAACACAC-CTATCATCATAGACTGACGGACAGGTAGCCTTAGAGTGGGAGGGGAGACGAGTATGAGA----------CTTAAAGGCCGCATGAGTCTAAGCTGAGCAGAAATACTCTAAGCTACAAGCATGATCCTGCCCAGGAACACACCTAGTACTTGCTCTTGAGCACTGAAGTGTATCTGAAGTCTAAATGGCACTCTGGAAGG s rn3.chr10 22216981 810 - 110733352 ACACACGAAATATTCATTTTCCTTAAGCAATCCAGT-TGGAACTTAGCAACTATTCATTCCGTGATAAATCTCCAAAGGTTCTAG--AGTATTACAGACTGTCAACACTCTCTTTCAAAG-AAAACCGTG-GGAATCGTTTTTTTTTTTTTTATTTTTTAACCTAGTGTACCTGCCAACCATTGGCTCTGCTCTCAGATGTTAACACTGATGT------TGCTTACTTACGTAACTAGCCAGAACTCTGAGATCAGT-----------GCCCGCTGTCCCATCTGAGGTGTCCCTCTTACC---------TAGATTCCTCTTCTC-CCTCCTCCTTCTGTGAC--TGTTCCTTTCATCTTTGTGTTGCCTTG--AGTGATCCGCGCCTTATTTCAATAATCATGGT-GCCCATCTTTGCATA---------------TCACGGACTTGAAGCTCTTTTCATCTCACATGAAGCTCACCGTGGTCTTTTTAAGTAAGAGAATG-------TAGTGCCCTCCCTTTTCGGAGAAGAACAGCAAGACACACAACAGTAAACTGCCTACACTAACAAGGGAGGTAACCAGTCCTCCTCGGACCAATAATACAGAGTTCTGCTGGCTCCAAACATG-GGCCTCTTGGTTCTATATGCCTGTTTCCCAAATATACAAATACAC-CTAACATCATAGACTGATGGACAGGTAGCCTTAGAGTGGGAGGGGAGAGGAGTATGAGA---ACCGTGCCTTAAAGGCTGCA-GAGTCTAGGC-GAGCATAAGCACTCTAAGCTACAAGCACGATACTGCCCAGGAATACACCTAGTTCTTACTCTTAAGCATTGAAATGTATCTGAAGTCTAAAT--CACTCTTGTGCT s canFam1.chr9 14354137 751 + 53642819 ---CTGAAAATGTTAATCAGTCCTAAGCAAAAGAGTGAGCAATTTGGCAGGTATTCACTCAAAGATAAATCTGGTTGAAATCAAG-------CAGAGATTACAAATCCTTTCTTCCAAGC-AGAGTCATAGAGAACTTTTTTAAAATTTGAAGTTTATTAA-----TTTCTGTGCCA-CTATTTTATTTAATTGTGGGTATGAACC----------------------------------------TTCAGATAAAT-----------GTTTCCTATTTTCTATAAGGTTGCTATTTTACTATCTACAGATATATT------------TTTTCTTCTTTAAAC--TATTTCTTTCTCCTTTCTCTCACTTTGAATTTGATCTGCAACTTACTTGGATAAT-------GATTATCTTTGTGTAACACTTTATGGTTGTCTATGG--------------------------------acaacaatc-tcctgagtagaagaatgtagatattatgatccttattttgcagaggcgaaagatgaaaatctaaaatgtgaatgacttgccataacaagaaaggctatcagctggacagggaccagtaa---agagctcttctgaggcctaatATG-ATCATAATGAATCTATACCCCTTCCAGAAAAACACACAGACATGCTCCTCCATCATGCACAGAGACACAGGTATACTTAAAGTAGGAAGTGGGAAGCAAGTGAGAAGAATCATGACTTGAAGAATGAGTGAATCAATGTTAAGTGTAAATAATGTGAGG-GTCAGGATGATCCTGCACAGAAGCCCACTCCATGTTCCCTCTTAAATATTGAACCATGCCTGAAGCCTAAATGATGTATTGGAATG a score=15923.0 s hg17.chr17_random 2565074 149 + 2618010 --AGAA-CCAGGTCTTTCCTACCACAGCTACATTTGATTTCAGGAAAAAATGCAATACCTTGCAAAAAAAAAAAGA-------AAAAAAAGAGAGAGAGAGAATGAAATCAAATGTCAACAGATTAATCTAGCTCAGGCTCA-----TAAGTTTCCTTTGGTAA s panTro1.chr19 42832109 155 - 82489036 --AGAA-CCAGGTCTTTCCTACCACAGCTACATTTGATTTCAGGAAAAAATGCTATACCTTGTaaaaaaaaaaaaaaaaaaagaaaaaaaGAGAGAGAGAGAATGAAATCAAATGTCAACAGATTAATCTAGCTCAGGCTCA-----TAAGTTTCC-TTGGTAA s mm5.chr11 22425496 79 - 121648857 --AGAC-TTGGGTCTTTCA------------------------------------------GCAAACAGAACAAGA------------------------------AATTAAA---------ATCTATCCGGTTGAGGCCCA-AAGTTGGCTTTCTATTGTGAT s canFam1.chr9 14354888 130 + 53642819 AAAGAGTCCAGGTGTTTCCTACCACAGATACATTTGATTTAGGGAGAAAATGCACTACTT--------GAAAAAAA---------------------ACTGAATAAAATCAAATGTAGACAGATTAA-----CTTAGGCCCTTAACTTCGATTTCTATTGGTAG a score=170031.0 s hg17.chr17_random 2565223 650 + 2618010 TAAT----TTTACTTGAATTTTAG-TTTTGTATTCTTAAGTTATTATTTTATTTAGT------------CTATATAGACAGAAGCTAAAAATTCAA----TTTG-CCCACAATTAGCAGT----GAAGGAAACAAAGCAa----------------gccaactctcaatag-aagacagatggccaatatg---catatg-aaggaata-tttcaacctagc-tggttataaa-agaaa-tacagacac-aacaa--tcataaaattg--tgtttttca-ccaatg-aaattgg-aaaacacctttaaaataaagtatctgtcaaaggtatacg-aaatgggaattcttaatcaaacacatctggtggaaatagataatttgaaaaaaaaagtaggtaaatagaaccattctgaaaaacagtatggcaatg-atatgaaaggccttaaaaatactggaaattaacatttgcccctataattctaccaaataattaattctgtttctgaaataatcaaaaatatg--cacaaagatttacatacagaggtgct-ctgttgccaaaattattgtagagaaaagtggaaaataacctcaatgca------taataataTAAAATTTTAAAGTAACATAGAAGTGCAATTATATAATAAATGCTAAGAAATATTAAAAGTAACACTATCAAATATCCtttaaaatataagataattatatatat s panTro1.chr19 42832264 652 - 82489036 CAAT----TTTACTTGAATTTTAGTTTTTGTATTCTTAAGTTATTATTTTATTTAGT------------CTATATAGACAGAAGCTAAAAATTCAA----TTTG-CCCACAATTAGCAGT----GAAGGAAACAAAGCAA----------------GCCAACTCTCAATAG-AAGACAGATGGCCAATATG-GCGATATGTAAGGAATATTTTCAACCTAGCGTGGTTATAAACAGAAATTACAGACACAAACAATTTCATAAAATTGGTGGTTTTTCACCCAATGAAAATTGGAAAAACACCTTTAAAATAAAGTATCTGTCAAAGGTATAGG-AAATGGGAATTCTTAATCAAACACATCTGGTAGAAATAGATAATTTGAAAAAAAAAGTAGGTAAAtagaaccattctgaaaaacagtatggcaatg-atatgaaaggccttaaaaatactggaaattaacatttgcccctataattctaccaaataattaattctgtttctgaaataatcaaaaatatg--cacaaagatttatatacagaggtgct-ctgttgccagaattattgtagagaaaagtggaaaataacctcaatgca------taataatataaaattttaaagtaacatagaagtgcaattatataataaatgctaagaaatattaaaagtaaca------------ctttaaaatataagataat--tatatat s mm5.chr11 22425575 587 - 121648857 CAATCAGCTTTACATGAATTCTAA-ATTTGTAGTCTCAACTTATTATTTCATTTAGTGTTTCATTTTTATTCTACATACAGA--TTAAGAACTCAACTGCTCTGTTCCACATTGAACAGC----CAAAGAAATGAAGCAACAGT-GCAGAATCCGGGCTAATTCATGCTAG-GAGGCAAATGCCCAGGACCTGAGCAATG-GGAGCATG-TGTCAGCCTAAC-GTGCTATGGG-AGAAA-----------CGCAA--TAAAAGAAATG-TCATCTTTCGTCT--TGCAAATTGG-AAAAGACTTTGAAAAT----------------GTTTACA---------------AACCGAACACAACTG----------------------AAAAAATA----------------CTGGAGGGCAGAAGTGTAATGAATAGTAAAGGCTTTGAAATTATTGGACATTTACATTTGTCCCCATAACTCTATCTGGTAAATATTTCTACTTCAG-AATAATTAGAAACAAA--TGCAAGGATT--CATGTAGAGAATCT-CTATTGCCACTGTTATCAAAGCAGATGCTTGAGATTAATTAAAAAGCAAATAATTAATAAAATGAAATCTTAAAGTAACCCAAAAGTTCAATTAT-TGATAAATACTAGGAAACATTAAAAATCAGG------------------AATGCAAGATAAT--------- s rn3.chr10 22217791 565 - 110733352 ----TGGCTTTACCTGGATTCTAA-ATTTGTAGTCTCAATTTA--------------------------TTCTACGTAAAGA--TAAAGAATGCAGCTGTCCTGTTCCCCATTGAACAGC----CAAGGAAGTGAAAACACGGTAACAGAATCAGGGCTAATTCATGATAG-GAGTCAAATGCTCAGGACAGGTGCAATG-GGAGCATG-GGTCAGTCTAAC-TTGCTATG---GGAAA-----------CGCAA---AAATGAAATG-TTATCGTTCGTCT--TGCAAACTGG-AAAGGACTTTGAAAAT----------------GTTTACC---------------AGCCAAACACAACAG----------------------GAAAAGTA----------------CTGGAGGGCAGTAGTATAATTAGTATTAAAGGCTTTGAAATTATTAGACATTTACTTTTGTCCCTATAACTCTATCTAGTAACTATTTCTATGTCAG-AATAATCAGAAACAAGGACACAAAGATT--CAAATAGAGAATCT-CTATTGCCACAGTTATTAAAGAAAATGGTTGAGATTAA-TAAAAAGCAAATAATTAATAAAATGAAACCTTAAAGTAACCCAGAAGTTCAATTAC-TGATAAATACTAGGAAACATAAAAAATCAGG------------------AATGCAAGATAATGGAATGTAT s canFam1.chr9 14355018 623 + 53642819 TAAT----TTCATGTGAATACTAG-TAGCATGGTTTTGAATTTTTCTTTTACTTAGG--------------ATGCAGATATAAGCTACAAATTCGA----CTTT-CCCACACTTAGCAGTAAGAGaaggaaacaaagcaa----------------gccagttctcaatagagaaataaatggctaatgca---catatg-aaataatg-tctcaacctaac-tcattataaaaagaaa-tacaaatac-aacaa--taacaaaattt--catttttcaccc--aacaaattgg-caaa------taaaat-----atccatcaaaagtacagggaaatggtaattc----tcaaatatagcttgtggggatacataaa-------tagaaagaggcaaagagaaccattctggagggcagtatgacaatgaatatcaaaggtcttaaaa-tattgttaactagcatttgctccaataattctatccaataattatttctgttcctaagatgatcagaaatgtg--cataaagatttctatccatagttgttactactgccacaattaccac--------cttgcaaataacctaaataat------taatcatataaaattcttaagtaacttagaagtataactatatgatgaatgctaggagacattaaaaataacattatcaaatatacttaagaattcaagataat-gaaaat-- a score=12723.0 s hg17.chr17_random 2565873 83 + 2618010 atataatatatatGCACACACACAAAGGCAAGTTTCAGAACC-TATGCACAATATGATTCCAGTAATGTAA-------------------------------------------------------TGTAATGATAAAC s panTro1.chr19 42832916 83 - 82489036 atataatatatatgcacacacacaaaggcaagtttcagaacc-tatgcacaatatgattccagtaatgtaa-------------------------------------------------------tgtaatgataaac s mm5.chr11 22426162 134 - 121648857 --GAAATATATGAGCTTATGCAAGAAGGTACGTTATAGAATC-TA--CATAAAATGATTCCAGAAATATAAAAATAGATGATTGCATATAGTCAAAAATAATCCCATCATATTTATATGTGTGCTGTGTAATATCAATA s canFam1.chr9 14355641 76 + 53642819 -----atat-tatgtttaagcaaaaaggcaagatacagaatagtaggtata--atgattccagcAACataa-------------------------------------------------------aaaaataataaaa a score=3760.0 s hg17.chr17_random 2565956 13 + 2618010 -AATGTATACAAA--A s panTro1.chr19 42832999 13 - 82489036 -aatgtacacaaa--a s mm5.chr11 22426296 15 - 121648857 -GATATTTCCAGATGA s rn3.chr10 22220347 13 - 110733352 -AATGAATATGAA--A s canFam1.chr9 14355717 14 + 53642819 aaatgtatagaaa--a a score=692358.0 s hg17.chr17_random 2565969 1433 + 2618010 TAT------------------------TTTGT-----------AGTAAAAAACTA-------------------GAATAATAAGCGTTTTTTA-AAGTTTTTCCATATTTCTTAATGGCATATTTC-----------------------------------TTCATGTTAA-TGTAATTT--------------TGATCTTCAAAAGCCTCAAAGCTAAAAGAAAG----TAAAATTAAGTTCAACTCTTTAAAACA-AGAATACTTTATCAGACAAATTGGTATAGATAAAGTGAC--AGATTAAA-AATAAAGCAGCACTGGAGAGCAGGCCCACATATTACAGACTCACTGTCATGCA---ATATTCCCCAGCAGGGCTGGTGTTGAAAATATAATAACAGAAGGCTTTGGTGATACCTCATAAAGCTTGTGTTCCAGTGACAAATAGCAAGGGTAATCAGTTCAGATTTAGCAACGAACTCAAATAAAAGTTAATTAGGAAAATGGGGACTCTTTACAGA-GTCTAAATGTCAAACAAATTAAAGAATAATGGGTACACTAACATAAACAAGAACCAGG-AAAGAAGCCTCTTGGCTGGACCAACTCCCAGTGGAGAGGGTACATAAGAGCCCCAGAGAAAGGAGAGATATTCACACCTCAGAAGCCTTATCCTTCTTTTCAATCAAACCCATAAATACCA--CAGACTCTAATAGCCATGGATTGCTGTGCCTCTCGAGGCTGCAGTGTCCCCACCGGGCCTGCCACCACCATCTGCTCCTCTGACAAATCCTGCCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACACACAGTTTGGTTACTGGAGCCCACCTGCTGTGACAACTGTCCCCCACCCTGCCACATTCCTCAGCCC-TGCGTGCCCACCTGCTTCC-TGCTCAACTCCTGCCAG-CCAACTCCAGGCCT-GGAGACCCTCAACCTCACCACCTTCACTCAGCCCTGC-TGT---GAGCCCTGCCTCCCAAGAGGCTGCTAATGGAT-GGCTACTTTGCTCAGTGCCTGAGATTGAAAAAGTCAACATAGAAGCTTTAGCATTCACCTATCTCAGTACCTACAACTAATGTACTCTGCTTTAGAAATTGGAAC--AAGGATGGTACTACCACAATCACCCCCTGCA----AAAAAAAAGAGACCAAGAAACTTTCAATGACCATTCAG-------CTATAACCAAC----TGCAGTTTGAATCAGTGGATGCCTATAGCTTCCTGAAGCTGTTCGATTCCTTCATATTAAAGTGTCTCTTTCTGTGGGTGGTTTGGGAATTCTGTTTTCAGTCTTGGGTGGTATCTTTCTGAAAATTAAGGAAGTTCTTCATGATTATCCTAATAAATTTTACATCTCTGGCATAGCACAAGTGTCTACAATTACTTCTGTTTATTTCTGTTCATTCATTAAATGCGT-------------TTCTTAACTCTGAACATTGGCATTTAAAGAAAAACTGGAAACAT------TAGTGAAACTGAAAATGGTGGCAGTATGGACAAAAATTTCTTAATTTTGCTGTTCTTGCTGTTTTAAGAAAA s panTro1.chr19 42833012 1437 - 82489036 tat------------------------tttat-----------agtaaaaaacta-------------------gaaTAATAAGCGTTTTTAA-AAGTTTTTCCATATTTCTCAATGGCATATTTC-----------------------------------TTCATGTTAA-TGTAATTT--------------TGATCTTCAAAAGCCTCAAAGCTAAAAGAAAG----TAAAATTAAGTTCAACTCTTTAAAACA-AGAATACTTTATCAGACAAATTGGTATAGATAAAGTGAC--AGATTAAA-AATAAAGCAGCACTGGAGAGCAGGCCCACATATTACAGACTCACTGTCATGCA---ATATTCCCCAGCAGGGCTGGTGTTGAAAATATAATAACAGAAGGCTTTGGTGATACCTCATAAAGCTTGTGTTCCAGTGACAAATAGCAAGGGTAATCAGTTCAGATTTAGCAATGAACTCAAATAAAAGTTAATTAGGAAAATGGGGACTCTTTACAGA-GTCTAAATGTCAAACAAATTAAAGAATAATGGGTACACTAACATAAACAAGAACCAGG-AAAGAAGCCTCTTGGCTGGACCAACTCCCAGTGGAGAGGGTATATAAGAGCCCCAGAGAAAGGAGAGATATTCACACCTCAGAAGCCTTATCCTTCTTTTCAATCAAACCCATAAATACCA--CAGACTCCGATAGCCATGGATTGTTGTGCCTCTCGAGGCTGCAGTGTCCCCACCGGGCCTGCCACCACCATCTGCTCCTCTGACAAATCCTGCCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACACACAGTTTGGTTACTGGAGCCCACCTGCTGTGACAACTGTCCCCCACCCTGCCACATTCCTCAGCCCGTGCGTGCCCACCTGCTTCCTTGCTCAACTCCTGCCAGCCCAACTCCAGGCCTGGGAGACCCTCAACCTCACCACCTTCACTCAGCCCTGCTTGT---GAGCCCTGCCTCCCAAGAGGCTGCTAATGGAT-GGCTACTTCGCTCAGTGCCTGAGATTGAAAAAGTCAACATAGAAGCTTTAGCGTTCACCTATCTCAGTACCTACAACTAATGTACTCTGCTTTAGAAATTGGAAC--AAGGATGGTACTACCACAATCA-CCCCTGCA----AAAAAAAAGAGACCAAGAAACTTTCAATGACCATTCAG-------CTATAACCAAC----TGCAGTTTGAATCAGTGGATGCCTATAGCTTCCTGAAGCTGTTCGATTCCTTCATATTAAAGTGTCTCTTTCTGTGGGTGGTTTGGGAATTCTGTTTTCAGTCTTGGGTGGTATCTTTCTGGAAATTAAGGAAGTTCTTCATGATTATCCTAATAAATTTTACATCTCTGGCATAGCACAAGTGTCTACAATTACTTCTGTTTATTTCTGTTCATTCATTAAATGCGT-------------TTCTTAACTCTGAACATTGGCATTTAAAGAAAAACTGGAAACAT------TAGTGAAACTGAAAATGGTGGCAGTATGGACAAAAATTTCTTAATTTTGCTGTTCTTGCTGTTTTAAGAAAA s mm5.chr11 22426311 1430 - 121648857 TATCTTTATGCTCTTTTACATTTTCAATTTTT-----------AATAAATATGTAATAT------TTTGTATAGAAATAATAA-CTATTTGCA-AGGTTCGTCCATATTTCTC--------ATCAA-----------------------------------ACCACTTTAG-TGTAGTGT--------------TAAGCTGCAAGTGCCTCAGTGCTCATAGACAGTAACTAAAATGCAGTTCATCTCTTCAAAACG-TAAACA-TTCATCAGGC----TGATAGAGAAAGGGCAAA-GAGACTAAA-AGGTTGTCAGCAATAGCAAGGAGAGCAGCACTCTACAGA-TTACTGTCATGCCCCTGTGGTCCCCTATA-GCCTGGTAGTGACACTGTAATTGTAGAAGCCTTTTGTGGTACATCATAAAGCTTGTGTCCTAGTGACAAACAGCAAGTGTAATCAGTGAAGATTTGGCAATGAATTCAAATAAAAGGTAATTAGCAGAATAGGGACTCTTTACAGGCATCTAAATGGCAGGCCAATTAAAGGATAATGGGAAC----------ACGAGAACCAGGAAAAGAAGCCCATTGGTAGGGTCAACGCCCACTGGAGAGGGTATATAAGAACCCCAGAGCAAGAGGAGACATTTGAACTTCAGAAATTTCATCTTT----------GAAGAGATCAAAGCCAACCAGACTCCAGCA-CCATGGCTTGCTGTGTTGCCCGCTGCTGCAGTGTCCCCACCGGCCCTGCCACCACCATCTGCTCCTCAGACAAGTCCTGCCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACACACCATTTGGCAGCTGGAGCCCACCTGCTGTGACAACTGCCCCCCACCCTGCCACATCCCTCAGCCC-TGTGTGCCCACCTGCTTCC-TGCTCAACTCCTGCCAC-CCAACCCCAGACCT-GCTGACTGTCAACCTCACCACCTATGTGCAGCCAGGC-TGTGAGGAGCCCTGTGTCCCAAGGTGCTGCTGACCTGT-GGCTCCCTTGCTTGGCACCAGTCTTCGAAAGAGTCAACCCGGGAGCTCTAG-GCTTACCTG--GCAGAACCTGCAATTAGCTTATTCTGATTTAGAAGTTGGAGTTGAGTGATATTGTCATGACAATGGCCTCTCCCACCTCAACAAAAAGAAACC-AGAGTCTT----TGGTAATGCAA-------CATTTACCGACCGTGTGCAGTTCGGACTA-TTGATGCTTCAAGATGTCTGAAGGCGTT-GACTCCTTCATCTTAATGTGTGCCTTTCTTTGGGT-GTTTGGGGTTTCTGTTTTCAGTCTTGGGGGGTATTTTTCTGCAAATCGAGGAATTTTCTCATGATCTTCCTAATAAATTTTGTGTCTGTGCCATAGCACAAATGTCTATAAT---TTTTGTTTATTTCTATGACTTTGTTAAATGTGT-------------TTCTTAACTCCTGA---TGTCATTTTAAGAGAAACCGAGAGC---------------CATGAAAATAGTGGCAGCAAAG--CAAGACTTACTGGTTTTGTTGCTCTTGCTATTCTAGGGAAA s rn3.chr10 22220360 1362 - 110733352 TAT------------------------TTTAT-----------A-TAA--------------------------AAGCAATAT-CTATTTGTA-AAGTTTGTCCATCCTTCTC--------ATCAA-----------------------------------ACCACTTTAG-TGTAGTGT--------------TGAGCTTCAAGTGCCCCAAAGCTCATGGACAGTAACTAAAATACAATTCATCTCTTCAAAAAATAAAAGAGTTCATCAAGC----TGATAGAGAAAGGGGCAAAGAGACTA-------------------------GAGCAGCATTCTGCAGA-TTACTGTCATGCCCCTGTGGTCCCTCATA-GCCTGGTGGTGACACTGTAGTTGGAGAAGCCTTTTGTGGCACATCATAAAGCTTGTGTCCCACTGACAAACAGCAAGTGTAATCAGTTAAGATTTGGCAATGAATCCAAATAAAAGGTAATTAGCAGAACAGGGACTCTTTACAGGCATCTAAATGGCAGGCCAATTACAGGATAATGGGATTAGGAACATAAACTAGAACCAGG-AAAGAAGCCCATTGGTAGGGTCAACGCCCACTGGGGAGGGTATATAAGAACCCCGGAGCAAGAGGAGACATTTGAACCTCAGAAACTTCATCTTT---------ACAAGAGACCAAAGCCAACCAGACTCCAGA--CCATGGCTTGCTGTGTCACCCGCTGCTGCAGTGTCCCCACAGGCCCTGCCACCACCATCTGCTCCTCTGACAAGTCCTGTCGCTGTGGAGTCTGCCTGCCCAGCACCTGCCCACACACCATTTGGCAGCTGGAGCCCACCTGCTGTGACAACTGTCCCCCACCCTGCCACATCCCTCAGCCC-TGTGTGCCCACCTGCTTCC-TGCTCAACTCCTGCCAC-CCAACCCCAGACCT-GCTGACCGTCAACCTCACCACCTATGTGCAGCCAGGC-TGTGAGGAACCCTGCACCCCAAGGTGCTGCTGACCTGT-GGCTCCCTTACTTGGCACCAGTCTTCGAAAGAGTCAACCAGGGAGCTCTAT-GTTTACCCG--GGAGACCCTGCAATCAGTTTATTCTGATTTAGAAGTTGGGGTTGAGTGAAATTGTCATGACAACGTCCTCTCCTGCCTCAGCAAAAAGAAACC-AGAGTCTT----TGGTGACACGG-------TGCT-----------TACCGTGTGGACTG-TTGATACTTCAAGATGTTTGAAGATGTT-GACTCCTTCATGTTAATGTGTGCCTTCCCTTGGGT-GTTTGGGGTTTCTGTTTTCAGTCTTGGTGGGTATCTCTCTGCGAATCAAGGAATTTCCTCATGGTCTTCCTAATAAATCTTGCGTCTATGGCATAGCAGAAATGTCTATAAC---TTTTGTTTATTTCTATGGCTTCATTAAATGTGT-------------TTCTTAACTCCTGA---TGTCATTAGAAGAAAAACTGAGAGC---------------CTTGAAAACAGTGGTGGTAAAG--CAAGACTTACTGGATTTGTCATTTTAGCTAGTCTGGGGAAA s canFam1.chr9 14356026 1538 + 53642819 tat------------------------tttattcaaatttttaaataaatacataatatGTATGGTCAAAAATGGAAAAATAGCTGTCTTTTACAAGTCTGCACATGTTTCTCAAAAGCATGTTAAGATATGATCTTCAAAAGTCCCAACACTTAATAAGTTACACGTTGATTATAGCTTAACAAAAAATTAAGTAATATTTTAAAGTCCCAAAGCTAAAAGAAAGTTACTAAACTTAAGTTCAACTTTTTCAAACA-AGAATACATCATCAGGCCCACTGATACAGATAAAGGCAAAGAGAATAAACATTAGACCTGCACTAGAGATAAGGCTTACATAGTGCAGGTATACTATTGTGCA---ATATTCCCCAGAAAGTCTGGTGTTGGAATTATAATAGCAGAAGCTTTTGGTGATATGTCATAAAACTTGTGTTCCAGTCACAAACAACAAGAGTAATCAGTTCAGATTTAGCAAGGAACTCAAATAAATGTTAATTAGGAGAATAGAGACTCTTTACAAGCATCTAAATGTCAAACCAATCAAAGGATAATGGGTACACTAATATAAACAAGAACCAGG-AAAGAAGCCTTCTGGTTGGACCAACACCCACTGGGGAGGGTATATAAGAGCCTCAAAGCAAGAGGAAACATGCACATCTTAGAAGCCTCATCTATCGTTACAACCAAATCAATTTAAAACA--CAGATTCCCACG-CCATGGCTTGCTGCGTTCCCTGCTGCTGCAGCGTACCCACTGGCCCCGCCACCACCATCTGCTCCTCTGACAAATGCTGCCGGTGTGGAGTCTGCCTGCCTAGCACCTGCCCACACACGACTTGGTTACTGGAACCAACCTGCTGTGACAACTGCCCCCCACCCTGCCATATTCCTCAGCCC-TGTGTGCCCACCTGCTTCC-TGCTCAACTCCAGCCAC-CCTACCCCAGGCCT-GGAGACCCTCAACCTCACAACCTACACTCAGCCCTCC-TGT---GAGCCCTGCATCTCAAGCTGCTGCTGAATGATGGGCTGTTTTGTTCCATGCCTGACAATGAAGAACTCA-----GAAGCTTTAGTGTCCACCTGTCTCAGTACCTACAACTAATTGACTCTGCTTTCCAAGTTGGAAC--AAGGATGACATTATCCCTGAAAACCCTCACT------CAAAAAGAAACCAAGAGACTTTCAGTGGCCACGTGGTAGATATTAGTGACCAAA----GGCAATTTGAATATGTGGATGCTATTGGCTTCCCAAAGTTTTTCATTTCCTTCGTATTAAAGTTTATCTTTCTTTGGTG-CTTTGGGGAT--TGTTTCCAGTGTTGGGTGGTATCTTTCTGGGAACTAAAGATCTTTTTCATGATCATACTAATAAATTTTCCATCTCTGGCATAGCACAAATGTCTATAATTATTTTTGTTTATTCCTATTAATTCATTAAATGTATTCATCAAATGTACTTCTGAACTCTAAAAGTCAACATTTTAAGAAAAACAGAGTATCTGCAAAACCAAAAAAAAAAAAAAAAAGACTGTACAGGCAAATATTTCTTGCTTTTATTGTTCTTATTGTTTTAAGAAAA a score=153740.0 s hg17.chr17_random 2567402 890 + 2618010 TTAAACATCCTTGCATGTAAGATGGTCTAGTACATCGGCATATTTGAAAGTAGACTTTTCCTGACTTGTCCTCCCAAAAAATGGTTTCAGACAGGTTGAGAAATACTGAACATTACCCAAACACCAAATATGACAAAATATATAAACTAATCCAGGTGACATGATCTATT-----TATGAAAAAAATATA--------ATAATGTCATTATTTATTCAACTAAGATTTATTAAATGTCT-ATTGTGTGTCCTGTGTTTTATTGTCTCTGCTGAAAATAAGCTAACCATCTGGCAGGTGAAGCAAATACAAACACAACATCCATTTGTTTCTTCCTACGGTTAATAATTA---TCGAATGCCAGTTGCTGTGTTATAATAAAAAA-AGATGTGTTCTACCAGCAGTATTAGTAAAGTGCTGTGGGATCATAAAATTGAGAACAATGAAGACTGTTGTCATGG---------GGGTAAAGTGGGAAAGACATAGTCAAAGAGGAATTGACTGCAGCTAGTCATCAAAGGGATATGGAGGAAAAGAAAATATCAAAGAAAGACTAGACAGTGGAGTTATGTCACCAATTGAGCCTAGGAGCCGAGAAGGAGAAGAGAGTTCAAGATGGAAATACTCTGTTCTTCTTGCTCTACACAGGTCATGTTTGCAACACGAGTAGCTATATCTAAATGGG----------------GTTTGGAAAGTTATTCTGGAGAGGAAGAAGATATACGTAGGTAAGTAAAGAAGACTGTGTAAAAGTTC--TCAAGTACTTACAGAAGGCACAGTTGCAAATACGCTGGCTGAAATTCCATCAGGCATAGCAAAGAGTGGCTGCTGGGTGATTAGAAGCTGAGTGGAGATACCAGAGGTCATTCACTATTAACAGACTTTGAGGTT-CCAGCCTAGCCAGGGTagaaaaa s panTro1.chr19 42834449 890 - 82489036 TTAAACATCCTTGCACGTAAGATGGTCTAGTACATCGGCATATTTGAAAGTAGACTTTTCCTGACTTGTCCTCCCAAAAAATGGTTTCAGACAGGTTGAGAAATACTGAACATTACCCAAACACCAAATATGACAAAATATATAAACTAATCCAGGTGACATGATCTATT-----TATGAAAAAAATATA--------ATAATGTCATTATTTATTCAACTCAGATTTATTAAATGTCT-GTTGTGTGTCCTGTGTTTTATTGTCCCTGCTGAAGATAAGCTAACCATCTGGCAGGTGAAGCAAATACAAACACAACATCCATTTGTTTCTTCCTACGGTTAATAATTA---TCGAATGCCAGTTGCTGTGTTATAATAAAAAA-AGATGTGTTCTACCAGCAGTATTAGTAAAGTGCTGTGGGATCATAAAATTGAGAATGATGAAGACTGTTGTCATGG---------GGGTAAAGTGGGAAAGACATAGTCAAAGAGGAATTGACTGCAGCTAGTCATCAAAGGGATATGGAGGAAAAGAAAATATCAAAGAAAGACTAGACAGTGGAGTTATGTCACCAATTGAGCCTAGGAGCCGAGAAGGAGAAGAGAGTTCAAGATGGAAATACTCTGTTCTTCTTGCTCTACACAGGTCATGTTTGCAACACGAGTAGCTATATCTAAATGGG----------------GTTTGGAAAGTGATTCTGGAGAGGAAGAAGATATACGTAGGTAAGTAAAGAAGACTGTGTAAAAGTTC--TCAAGTACTTACAGAAGGCACAGTTGCAAATACGCTGGCTGAAATTCCATCAGGCATAGCAAAGAGTGGCTGCTGGGTGATTAGAAGCTGAGTGGAGATACAAGAGGTCATTCACTATTAACAGACTTTGAGGTT-CCAGCCTAGCCAGGGTagaaaaa s canFam1.chr9 14357564 897 + 53642819 CTAAATGGCCTTGCATATCAGATGGTCCATTATATCAGCACGGTCACAAGTATACTTTCCCTAACTTGTCCTACCAAAAAGTGGTTTAAGGTAAATTGGGAAGCACTGAACATGATATGAA----------GATATAACATATCAACT--TCCA-GTGACCTGATGTGTTGTTTATGTAAAAAAAAAATAGTAACTTCATAATGTTATAATTCATTCAGTAAACTTTTATTAAATATCTAATTATGTGCCCTATATTTTATTATCACTGCTCAAAATGAGCAGACTGTCTAGCAGGTCATGTAGATAGAAACATAATACTCATTCATTCCTATGTACAATTAACAATTATTTTTGAATGCTGAGTACTGTATTATAACAAAAAATATAAATGTTCTACTAGTAGTATTAGTAAAGTGCTGTGATACCATAAAATTGAGAACAATTAAGATTGTTGCCATGGTGATAAGCAGGAGAAAGAGCAAAAAAGAGAGTCAAAGA-----CCACTAGAGCTGGTGGCCAAAAAGATTTAAAAGAGAAGAAGGTGTCAAAGAGAGATTAGACAGTGGGGTTATGTCACTAAGTAAGCATAGGAGCAGAGAAGGAAGAGAGAATTTTAAAAAGACATAATGTATTC----TGCTCTGAATATG--------GAGGCACAACT--CCGTATCTAAATGGGAATTTAGAGAGCTGGAATTTGCACAAGTGTTCTAGAGAGGAAGAAGACGTATGAAGGAAGGTGTGCAAGTCTGTGTAAAAGTTCTATCAAATACTTGCAAAGGGCTGGGTTG----TATGCAGGATAAAATTCCATGAGGC-TAAC--AGACTGGCTGCTGGGGGATAAAGAGCTGAATGGAGATACCAGAAGTCAACCAATATGAACAGATACTGAAGTTCCCAGCACATTCAGAGATGACAAA a score=152779.0 s hg17.chr17_random 2568292 1707 + 2618010 aggattgaaaaagaaattgaagaaactaagaagcctgtgggaaagtaccaagtggtgaaatgaggatgaaattggagtctcagaatgagaggagttaaagaataggaaataaaaatttgggagggaataaaagcaaaaattttcgaaatttggtgacattttattaacccatatattcaagagtctcaataaacacttagcaggataattgcaat----acacacacacacacacacaccacctacacatatcatagtcaaactgctgaataccaattaagaaaaaaaaacaaatcaaatagaaggcagcaaagaaaaaatggatgtctgacttctttttaggtaaaatggatgtcagaggaaaatcaaacctcatttaaaaggtcctaaaggaaaaaaaattgtgaacactacagtctgcaaaaacaaccttcaaaattaaagaaaaaataaaaacacttttaggtgaataaaGCTGACTTCTTTTTTAAGTGCCTGAAGATCTACACTATAAGAAACAATAAGGAAGTCCTTTTGGTTTAAGAGTAAttttacctcaaagacaaaaaacaaacaaaccagttcagaaatggacagagaacttgaatagactttcttcaaagaagatatacaaatagccaatcagcacaggcaaaggtactcagcatcac-tcactaatcattagcaaagtgcaaatcaaaactacaatgagatactacctcccacccattaggatggctgccataaaataaataaataaataaataaataaatacaaaaaacaaaacagccaggtgtggtggcttatgcctataatc-ccagcactttgggaggccaaggcaggtggatcacttgaggtcaggaatttgagaccagcccagccaacatggtgaaatcccgtctctactaaaaatacaaaaattagctgggcgtggtggtgggctcctgtaatcccagctacttgggaggctgaagcaagagaatcacttgaacccaggaggcagaggctgcactgggccaagatggcaccactgcactacagcctgggtgacagagcaagattccgtctcaaaaaacaaaaaacaaaacaaaaccccttatatatatatacacacatatatatgtaaaatatataatatatacattatatatatatagagagagagagagagagaaattggaaccctcaagcattgctggtaggaaggtaaaattgtacagtgactgtgaaaaacaatatagcacttcctcaaaaaattaaatgtagaattgccttatgatcttgcgcttccacttctgggtatatacccaaaagaattgaaagcagggtcgctaaaagacatttgtatacttgcgttcatagcagcaataattgcaatagctaaaatatgaaaacaaacaagtgctcattgatagacggatggataatcaaaatatggtacatccatac--aatggaatattattcagccctaaaagggaaggactttctgacacatgccacaacatgaattaaccttgaagatgttgtgctaagtgaagtaagccag-cacaaaaagatactattcacttatatgctttcacttatatgaggtagttaaaagtagtaaaaaaatcatagagatgaaaagcagaacaatggttgccaggacacaagggcgggcttcatgggcagttg-tttaaagggaacagagtttcagttttaaaaggtgaa s panTro1.chr19 42835339 1711 - 82489036 aggatggaaaaagaaattgaagaaaccaagaagcctgtgggaaagtaccaagtggtgaaacgaggatgaaattggagtctcagaatgagaggagttaaagaataggaaataaaaatttgggagggaataaaagcaaaaattttcgaaatttggtgacattttattaacccatatattcaagaatctcaataaactcttagcaggataattgcaatacacacacacacacacacacacaccacctacacatatcatagtcaaactgctgaataccaattaagaaaaaaaaacaaatcaaatagaaggcagcaaagaaaaaatggatgtctgacttcttttcaggtaaaatggatgtcagaggaaaatcaaacctcatttaaaaggtcctaaaggaaaaaaaattgtgaacactacagtctgcaaaaacaaccttcaaaattaaagaaaaaataaaaacacttttaggtgaataaagctgacttcttttttaagtgcctgaagatcaacactataagaaacactaaggaagtcctttTGGTTTAAGAGTAATTTTACCtcaacgacaaaaaacaaacaaaccagttcagaaatggacagagaacttgaatagactttcttcaaagaagatatacaaatagccaatcagcacaggcaaaggtactcagcatcacatcactaatcattagcaaagtgcaaatcaaaactacaatgagatactacctcccacccattaggatggctgccataaaataaataaataaataaataactaca---aaaaaacaaaacagccaggtgtggtggcttatgcctataatctccagcactttgggaggccaaggcaggtggatcacttgaggtcaggagtttgagaccagcccagccaacatggtgaaatcccgtctctactaaaaatacaaaaattagctgggcatggtggtgggctcctgtaatcccagctacttgggaggctgaagcaagagactcacttgaacccaggaggcagaggctgcactgggccaagatggcaccactgcactacagcctgggtgacagagcaagattctgcctcaaaaaacaaaaaacaaaacaaaaccccttatatatatatacacacatatatatgtaaaatatataatatatacat--tatatatagagagagagagagagagagaaattgggaccctcaagcattgctggtaggaaggtaaaattgtacagtgactgtgaaaaacaatatagcacttcctcaaaaaattaaatgtagaattgccttatgatcctgcgcttccacttctgggtatatacccaaaagaattgaaagcaaggtcgctaaaagacatttgtatacttgcgttcatagcagcaataatcgcaatagctaaaatatgaaaacaaacaagtgctcattgatagacggatggataatcaaaatatggtacatccatacagaatggaatattattcagccctaaaagggaaggactttctgacacatgccacaacatgaattaaccttgaagatgttgtgctaagtgaagtaagccagtcacaaaaagatactattcacttatatgctttcacttatatgaggtagttaaaagtagtaaaaaaatcatagagatgaaaagcagaacaatggttgccaggacacaagggcgggcttcatgggcagttgatttgaagggaacagagtttcag-tttaaaaggtgaa a score=154548.0 s hg17.chr17_random 2571808 1700 + 2618010 cacctgatcattgttttatggtgagaacatcaaaaatctactctttcagcaaccttgaaataaacaatacattagtattaatctgatgaacatcaagccagattgatgggggaagcatgagataaaacacaaattaccaatatctggaattaaatagtgagaatttatagacactgcagatactaaaattcatgataaggattattatgaacaactttatttcagtatttttgcaacttaggtgaagtgaacaaactccttgaaaaatgcaactttcacacaaaatgaaatagaacaactgaatagCATTGTGAGGTTTCTATAAGTAGAGGTAAGCAATTTGATGTAGAGGTCAGCAAATATACATATATTtgcgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgaaatggagtctcactctcacccaagctggagtgcaatggtgtgatctcggctcaccgcaacatctgccttccaggtttcagcaattctcatgcctcagcctcccgaaaagctaggactacaggtgttcgccactatgcccaactaatttttgtatttttagtagagacaagccttcagcatattagccaggctggtctcaacctcctgcccttaagtgatctgcctgcctgggcctcccaaagtgctgggattacaggcttgagccaccgcgcccagACATTTTTTTTCCTAGTTAAAAACAAAACACaactttttcacatgggagactcctggaagaggtggcctcactggactccatcaaacatttaaggaataaataacactaatcttacagaatttcatgaaataaagaggaaacatttcccaatttaatttatgaacagtattactccattctcacactgttataaagaaatatctgagactggataatttataaaggaaggaggtgtaattgagtcccagttccacatggctggggaggcctcaggaaacttacaataatggtggaaggggaagcaggcacttcttacatgggggcaggtgagagagagcgtgggaaggaggaactgtcacacacttacaaaaccattagatttcctgagaacgaactcactatcacaagaacagtatacgggaaactgcccccatgatccaatcatccaggtccctcccctaacacgtggggatttggggtttataatttgagatgaagtttgggtggggacgcagagctaagtcatattgtgaacccagtatgtaacttgataccaaaacctaacaagatcattagaagaaaagaaatttacaggaaatatttctcaagaacatagatgggggtggaaatccatttgctaatcctatcaactaactgaataaaacaatttacataaaggataatgtagagtgaccaagtTATTCAATATGATTGATCATGTtgtagggtcacccagatcatccctccacttccttctttgccttgggaaacagattaccttgaccaccctgtggcccagccagctgtgtgtttcccctgcagcttgaacccgagctgacccttgaacattcccaggcactgttaaaagttatttaggttgttgcccaaaacagtgaaaatcaaccaagttgctgcacgtggatactagctctggccctgagccaaatttcttaaggcctcatgtaaactcttataacctgTCGCAC s panTro1.chr19 42838971 1671 - 82489036 CACctgatcattgttttatggtgagaacatcaaaaatccactctttcagcaaccttgaaataaacaatacattagtattaatctgatgaacatcaagccagattgatgggggaagcatgagataaaacacaaattaccaatatctggaattaaatagtgagaatttatagacactgcagatactaaaattcatgataaggattattatgaacaactttatttcagtatttttgcaacttaggtgaagtgaacaaactccttgaaaaatgcaactttcacacaaaatgaaatagaacaactgaatagcattgtgaggtttctataagtagaggtaagcaatttgatgtagaggtcagcaaatatacatatatttg------------------------tgtgtgtgtgtgtgcgtgtgtgtttgtgtgtgtgtttgaaatggagtctcactctcacccaagctggagtgcaatggtgtgatctcggctcaccgcaacatctgccttccaggtttcagcaattctcatgcctcagcctcccgaaaagctaggactacaggtgttcgccactatgcccaaccaatttttgtatttttagtagagacaagccttcagcatattagccaggctggtctcaaactcctgcccttaagtgatctgcctgcctgggcctcccaaagtgctgggattacaggcttgagccaccgcgccca----ttttttttcctagttaaaaacaaaacacaactttttcacatgggagactcctggaagaggtggcctcactggactccatcaaacatttaaggaataaataacactaatcttacagaatttcatgaaataaagaggaaacatttcccaatttaatttatgaacagtattactccattctcacactgttataaagaaatatctgagactggataatttataaaggaaggaggtgtaattgagtcccagttccacatggctggggaggcctcaggaaacttacaataatggtggaaggggaagcaggcacttcttacatgggggcaggtgacagagagcgtgggaaggaggaactgtcacacacttacaaaaccattagatttcctgagaacgaactcactatcacaagaacagtatacgggaaactgcccccatgatccaatcatccaggtccctcccctaacacgtggggatttggggtttacaatatgagatgaagtttgggtggggacgcagagctaagtcatattgtgaacccagtatgtaacttgataccaaaacctaacaagatcattagaagaaaagaaatttacaggaaatatttctcaagaacatagatgggg-tggaaatccatttgctaatcctatcaactaactgaataaaacaatttacataaaggataatgtagagtgaccaagtTATTCAATATGATTGATCATGTtgtagggtcacccagatcatccctccacttccttctttgccttgggaaacagattaccttgaccaccctgtggcccggccagctgtgtgtttcccctgcagcttgaacccgagctgacccttgaacattcccaggcactgttaaaagttatttaggttgttgcccaaaacagtgaaaatcaaccaagttgctgcatgtggatactagctctggccctgagccaaatttcttaaggcctcatgtaaactcttataacctgTCGCAC a score=12830.0 s hg17.chr17_random 2573508 76 + 2618010 AAATGTTAAAAGCAACAAGACAACTGCTATAGCAGAGATGCGTGCAAAGTGCTCTGGGAGGAGCC-ACATCTCCACA s panTro1.chr19 42840642 76 - 82489036 AAATGTTAAAAGCAACAAGACAACTGCTATAGCAGAGGTGCGTGCAAAGTGCTCTGGGAGGAGCC-ACATCTCCACA s canFam1.chr9 14368001 77 + 53642819 AAAAGTTTAAAGAGCTGTGACAACCGCTGTAGTGGAGGTGTATGCAGAGTGCAAGAGGAAAAGCCTCCATCTCAGCA a score=89434.0 s hg17.chr17_random 2573584 431 + 2618010 TGAGGCAGTTGAACgacgtttcagctgagtcttgacatgtgagttcatccaggaaacgaatagcagaagagcatttgaccaagaaaatagtacctacgaagcttgaaggatggctggagctt-------------------------agggtttgtgagacagaacatcaggaagtgagcccagaaaggtaaattggcaccaggttaggga----aggtcatatttgccaaggtagaaagtttgCATTCCATAAGTGGAAGGCGA-CAAA------AAGCAGGTTTGTATTTTAGGAAAATGATTCTGGCAGCC----TAGGTGGATGTTGTAAGGTAAGAGCATAGTATTATGCAAAATAAACTACCGTGTTGTTGTCGGTTTTTTTTTTT----ATCATGGCCTTTCATG--ATGTCTAT--------TTCTTTTTCTCTATTCCCAATGTTCCTTTCTTCTGGTGATGATATGCTATAGAAA s panTro1.chr19 42840718 435 - 82489036 TGAGGCAGTTGAACgacgtttcagctgagtcttgacatgtgagttcatccaggaaaggaatagcagaagagcatttgaccaagaaaatagtacctacgaagcttgaaggatggctggagctt-------------------------agggtttgtgagagagaacatcaggaagTGAGCCCAGAAAGGTAAATTGGCACCAGGTTAGGGA----AGGTCATATTTGCCAAGGTAGAAAGTTTGCATTCCATAAGTGGAAGGCGA-CAAA------AAGCAGGTTTGTATTTTAGGAAAATGATTCTGGCAGCC----TAGGTGGATGTTGTAAGGTAAGAGCATAGTATTATGCAAAATAAACTACCGTGTTGTTGTCGGTTTTTTTTTTTTTTTATCATGGCCTTTCATG--ACATCTAT--------TTCTTTTTCTCTATTCCCAATGTTCCTTTCTTCTGGTGATGATATGCTATAGAAA s rn3.chr10 22225777 405 - 110733352 TGAAGCAGCTGGATAGCATTGCCACTGGGTTTTGACATGAACCTTAAGCCAGGAAATGAAGGGCAGGAG---------------AAATAATATCTATG-AGCGGGGAGAGTGGCCGGAGCTT--------------------------GGGTTTGTGA--------ACCAAGTAATAAGCC-------ACAAGGTGGCTGTCAGCCAGGGAAGTGAGATTCTGTTTGGCAAGGTAGATTGCTTGGGTTGTATCAGTAAAGAATAA-AAAATTAAAGAAATGGAATCATATTTTTGAAAACCTATTCTGGCAGCAGGAGTCAGTGGATGTCCCAAAGCA--ATCATGG-ATGCCATCAATGAAACAGCCATG---------------CTTGTT----ATTGTGGCCTCTCATGAAACAACCATGAAAGAGCCTGTTTTCCTCTGTTCCCAGTGGCCTCTGCTTCTGAGGATCATGAGCTGCAGATG s canFam1.chr9 14368078 426 + 53642819 TGAGGTTGCTGAATGCCATTCTAGCT--GTCTTAACAAGTAGGATCATGCCGG------GTGGCAGAAGAGCAATGAATCAAGGCAGCA-----CACAAAGCTTGAAGGATGACTACAGTCAAGGCTGTACAGTCAAAGATGACTACAGGGTTTGTGAGACAAAGTATCAGGAAATTAGCCTAGAAAAGTAAACTGGCACCAGATTGGAAA----AGGTTGTTTTTGTCAAGCCAGAAAGTCTGGATTTCATAGGTGGAAAGTGACCAAA------AAATAGATTTGTATTTTGCTAAAGTGAGTCTAGCAGCG---GTAAGTGGATTTTCTGAGGTAAGGGCAT---ATTACA-AGAAGAAACAATAATG--------------GCATCTT----CTCATGACCTTTAATG--GCATCTAT---------TCATTTTCTTTATTCCCAGTGTTCCCTCCTTTTGAGGATAATATGCGATAAAAA a score=136.0 s hg17.chr17_random 2574015 2 + 2618010 Tt s panTro1.chr19 42841153 2 - 82489036 Tt s rn3.chr10 22226182 2 - 110733352 TG a score=49940.0 s hg17.chr17_random 2574017 540 + 2618010 gtcacgggtgattagcaactatctggggctggtggcatgggggtaagaagaatttatcaagatagttgtaggtaaagaaaggcagatatattagagaacgtatgaaaatacgttgcaaggaagcaatgggcagcacagcagagaaggggctgtctgcaaggagacaaaggcgtgctggagattttacaggatggtgcttgtactgtgtgctgaagagggtttgtgtggtactgataacactaaggttgcagtgagctaagttacatttttctatcagctgaaggtctggtgatagctgggtgcaggaatattgtgcaggagggctatgtgtcctggaccatgaagaaggtgagtcttatacattacctgctttctttctttgttttTTGTTTTTTGGTTTTTTTTATTTATTTATcacattgtgcaggttagttatatatgtatacatgtgccatactggtgcgctgcacccactaacttgctttcctctggtcctgccagcctgacttcttttccctaaggaggactccacaGAAATGA s panTro1.chr19 42841155 539 - 82489036 gtcacgggtgattagcaactatctggggctggtggcatgggggtaagaagaatttatcaagatagttgtgggtaaagaaaggcagatatattagagaacgtatgaaaatacgttgcaaggaagcaatgggcagcacagcagagaaggggctgtctgcaaggagacaaaggagtgctggagattttacaggatggtgcttgtactgtgtgctgaagagggtttgtgtggtactgataacactaaggttgcagtgagctaagttacatttttctatcagctgaaggtctggtgatagctgggtgcaggaatattgtgcaggagggctatgtgtcccggaccatgaagaaggtgagtcttatacatgacctgctttctttctttgttttttgttttttg-ttttttttatttatttatcacattgtgcaggttagttacatatgtatacatgtgccatactggtgcgctgcacccactaacttgctttcctctggtcctgccagcctgacttcttttccctaaggaggactccacaGAAATGA a score=1504.0 s hg17.chr17_random 2574557 7 + 2618010 ATTCTGG s panTro1.chr19 42841694 7 - 82489036 ATTCTGG s rn3.chr10 22226185 7 - 110733352 ACCCTGG a score=1431.0 s hg17.chr17_random 2574564 10 + 2618010 GTGATTTCTA s panTro1.chr19 42841701 10 - 82489036 GTGATTTCTA s rn3.chr10 22226192 10 - 110733352 CCCCCTCCCA s canFam1.chr9 14368669 10 + 53642819 GTAATTTCAA a score=11757.0 s hg17.chr17_random 2574574 33 + 2618010 TATTCTACGATGG-----AGACTATAGCTATAGATCAT s panTro1.chr19 42841711 33 - 82489036 TATTCTACGATGG-----AGACTATAGCTATAGATCAT s rn3.chr10 22226202 27 - 110733352 TGTTCT------G-----AGAGTACAGCTATCCATTAC s canFam1.chr9 14368679 33 + 53642819 TATTCTAAGATGA-----GAACTAAAGCTATAGATCGT s danRer1.chrUn 142371313 38 + 367113659 TATTAAAGGATGGTACACAGACTAGGGCTAAAAATCAC a score=16860.0 s hg17.chr17_random 2574607 44 + 2618010 TATACAACACTACCTAATTAATCAAGACCAAAATAAATAGTCCT- s panTro1.chr19 42841744 44 - 82489036 TATACAACACTACCTAATTAATCAAGACCAAAATAAATAGTCCT- s rn3.chr10 22226229 45 - 110733352 TGTGCAAAACTGTCTATTTCATCAAGACCAAAACGAATAGCCATG s canFam1.chr9 14368712 44 + 53642819 CATACAATACTATCTAATTAATCAAGCCCAAAATAAATAGTCCT- a score=13039.0 s hg17.chr17_random 2574651 65 + 2618010 ACCTGCAGG-----ACAATAA--------------------------CCAGTAACAAATAATTTACAATTAGAAATTAGTTCCAGACAGAAGGAAA s panTro1.chr19 42841788 65 - 82489036 ACCTGCAGG-----ACAATAA--------------------------CCAGTAACAAATAATTTACAATTAGAAATTAGTTCCAGACAGAAGGAAA s rn3.chr10 22226274 66 - 110733352 ACCCACAGA----CACAAGAA--------------------------CCAGCAGCCAAAACTCTCCAGTCAGAATTTACTTTGAGGCAAAAGGAGA s canFam1.chr9 14368756 96 + 53642819 GTGTGTTTGTTCTCTCACTACTTTtctctctctttctctctctctctcCATATGTCAACATTTTACAAATAGAAATTAGCTCAAGATAAAAGAAAA s danRer1.chrUn 142371471 59 + 367113659 ATCTGCAAG-----------A--------------------------AATGTAATCAATAATCTACAATTTTAGATGAATTCAATAAAGAAAAAAA a score=12169.0 s hg17.chr17_random 2574716 49 + 2618010 TATTTCTTA-TTTTACCTGCACTT------ACATGA----------CTGCATTTTAGCTAAC------TGGA s panTro1.chr19 42841853 49 - 82489036 TATTTCTTA-TTTTACCTGCACTT------ACATGA----------CTGCATTTTAGCTAAC------TGGA s rn3.chr10 22226340 61 - 110733352 TATTCCTAA-TTTTATCTGCAGTTAATTTAAAATAA----------TAACATGTTATGTAACACTTTTTGGA s canFam1.chr9 14368852 66 + 53642819 TATTTCTTATTTTTACCTGCAGTTACTTTAAAATAATGACACAATGCTGCATTTTAATTAGC------TGAA a score=32844.0 s hg17.chr17_random 2574765 168 + 2618010 GCCTGTGAT--GGACAACC---------AAAACATGGGTTTTCTTCACAGATATTTTTCTTTTGACTCATTAGGTTACTGTGAAAAGATAA--TTTTCTTTCAGAGATTTGTA------ATTTTTCAGAAGTGTTTTTGAATCCTTGAACTC-ATATTTGTTGCAGAGCAGCGTCAATATACCATGAG s panTro1.chr19 42841902 168 - 82489036 GCCTGTGAT--GGACAACC---------AAAACATGGGTTTTCTTCACAGATATTTTTCTTTTGACTCATTAGGTTACTGTGAAAAGATAA--TTTTCTTTCAGAGATTTGTA------ATTTTTCAGAAGTGTTTTTGAATCCTTGAACTC-ATATTTGTTGCAGAGCAGCGTCAATATACCATGAG s rn3.chr10 22226534 177 - 110733352 ACCTGTGTCTAGGACAGCTGGCTAGTGAAGAAGAGCATTTCTCTTCAACGAGGTTTTGTATGTTAGTTATCAGTTTGCTCCTGGGTTGTGG--CTTTATTTTAGGTATTAAT--------CTTTTCAAGTGCGTCTTTGAACTCTCAGCCCC-ACTTCCTTCACAGAGTAGTATCAGTACACTGTAAA s canFam1.chr9 14368918 152 + 53642819 ACCTATGAC--AGACAACC---------AAGACACGGATTCTC-------------------------ATTCAGTTACTGTGGAAATTAGATTTTTTTTTTCAGAGATTTGTAACTTTCAATTTTCAAATATGTTTTTGATTCCTTGAACTCTCCATCTATTGCAGAACAGCATTAATATACCATCAG a score=1172.0 s hg17.chr17_random 2574933 7 + 2618010 ACACTCT s panTro1.chr19 42842070 7 - 82489036 ACACTCT s rn3.chr10 22226711 7 - 110733352 CCCCTCT a score=33904.0 s hg17.chr17_random 2574940 218 + 2618010 AAGAACTTTTTGCA-TAAGTGTTGATGTGTAAAGAGAATCACTAAATTCAAACC----------CAGCTCTGCC------------------------------------------------CAGG----------------------GAGTAATAAATCCTAAGAGACTATTTTAACTCACTTACATATGTTCTTCtggtttggtttgg--tttgg--tttCTACTATCAGGTACCTAGGAAGTAGCACTCAAGAT-----TAGGAGAAAAAATAAG-TTTATTCTGGATCAAAAATTTTTTAACTTT s panTro1.chr19 42842077 218 - 82489036 AAGAACTTTTTGCA-TAAGTGTTGATGTGTAAAGAGAATCACTAAATTCAAACC----------CAGCTCTGCC------------------------------------------------CAGG----------------------GAGTAATAAATCCTAAGAGACTATTTTAACTCACTTACATATGTTCTTCtggtttggtttgg--tttgg--tttCTACTATCAGGTACCTAGGAAGTAGCACTCAAGAT-----TAGGAGAAAAAATAAG-TTTATTCTGGATCAAAAATTTTTTAACTTT s rn3.chr10 22226718 175 - 110733352 AGAA---TGTAGCA-GAA-------------------------CAATTTAAA------------CAACT-TGC------------------------------------------------------------------------------GAATAAATCCCAGGATGCTAT---------CTTATATAC-TCCTTCTGATTTTTTATTA--CTGTA--TTTTCATTGGCAGCTACCTGGGAAGTGATGCTCAGGGTAGGAATGGGAGGTTAATTGTGTTTTGTTTCAGATCATGAATTTTTTTTCCTT s canFam1.chr9 14370284 304 + 53642819 AAGAACATTTAGCATTAAGTGTTGAAATGTGAAGAGAATCACTAAAATCAAACCCAAGAgtctacaaccataccaccctgaaagtgttccaatcctatctgatcttggaagctaagcagggtcaggcccggttagtatttagatgggagaGTAATACATACTAAGGGACTATTTAAGTCCATCTATTTAAGACCTCTTGGTTTGTTTTTGGTTTTGGTTTTTCCATCATCAGCTACCTAGGAAGTAGTGTTCAGAGT-----TAGAAAAAAATTTTTAGTTTTTTCTGGATCATGAAAATTTTAACTTT a score=2027.0 s hg17.chr17_random 2575158 29 + 2618010 TTCAGATTAATCTGTTTTTTTCCTATA-----------AT s panTro1.chr19 42842295 29 - 82489036 TTCAGATTAATGTGTTTTTTTCCTATA-----------AT s rn3.chr10 22228456 40 - 110733352 TCAACATTAATGTCTACTTTCCACATACATGCATATCCAT s canFam1.chr9 14370588 28 + 53642819 GTCAGAATAGTGGGCCTTTTCCAGTAA-----------A- a score=144960.0 s hg17.chr17_random 2575187 426 + 2618010 GTTCTTAAAAATTCTAGAGACAATTTTCTCTATGCAC-CTTTGAAAATGAAATAAATGTAACGACTAAAACCAAGCAAAGTGAAATAGATTATCC--------TTCACAATGGAGGTGAAATCCA-AGAGATAATTCAAAAAAATTACGTATCTCAAGTTCCT--GTCTGTCAGATTTGGCACCAGAGA--TTTCATCCAGTGGAATTACTGATTTGGAACCTAAAT---AGAATTTTATTTTCCAAGTTCCAGTATTTTCAATTTTCATGAAATTCAGGCCTT-CATAAATAAATAAATAGGAGAAAACAGGCTCTACA--TCTCAGAAGAAAAGATTCCTGTGGGTTCCTTGCCCCTACTCTGAAGTATAATCATTAAGG-----AATTCCCAAGGGACTAAAAGGTTA---------------------------------TAACTTAGA-------------------------------ATTTATATTTCAC--------TCT-------------TAT------------------TAGGAATACAGG s panTro1.chr19 42842324 426 - 82489036 GTTCTTAAAAATTCTAGAGACAATTTTCTCTATGCAC-CTTTGAAAATGAAATAAATGTAACGACTAAAACCAAGCAAAGTGAAATAGATTATCC--------TTCACAATGGAGGTGAAATCCA-AGAGATAATTCAAAAAAATTACGTATCTCAAGTTCCT--GTCTGTCAGATTTGGCACCAGAGA--TTTCATCCAGTGGAATTACTGATTTGGAACCTAAAT---AGAATTTTATTTTCCAAGTTCCAGTATTTTTAATTTTCATGAAATTCAGGCCTT-CATAAATAAATAAATAGGATAAAACAGGCTCTACA--TCTCAGAAGAAAAGATTCCTGTGGGTTCCTTGCCCCTACTCTGAAGTATAATCATTAAGG-----AATTCCCAAGGGAGTAAAAGGTTA---------------------------------TAACTTAGA-------------------------------ATTTATATTTCAC--------TCT-------------TAT------------------TAGGAATACAGG s mm5.chr11 22433122 511 - 121648857 GCTCTTATTGATGCTGAAAGCAATTTTCTCTGTGTAA-TTTTGAAAGTGAAATAAAAACTATGA--AAAGTCAGACAACATGAAAT------TCCAG------TTTACAGTAGAGGTGAAATCCCTAGAACCAATACAAAGAAGTTCTGTCTCAAATGCTCATTCATCTATCTAGTGCTGTACCAGAGG-TTTTTACTCAGAGGGACTGTTGG-TTGAAACAGACATCACAGAATCATATTCCCCAGGTCCCAATACTTTTAATTTTCATGAAATTGAGACTTT-CCTAAATAAACAA----GAGGATACAGACTCCATA--TAACCAAAAGTAAGATTTTTGCAGCTTCCTTGGCTCTACTCCGAAGTATAATGGGTGAGG------TTTCTCAAGGGACTGAAACATTACAGCCACACCCCCATTTCTCTCTCTGCTCTCCTTAATATAGGTAAGGACAGGGATTGTAGGTTGGGGTACATCATTTATGTACCATGAACAATATCT-------------TATGATTGATCTTCAACTGTGCAGGAAGGCAGG s rn3.chr10 22228551 423 - 110733352 ACTTTTATTGATGCTGAAAGCAATTTTCTCTGTGTAATTTTTGAAAGTGAAATAAAAACCACAATTAAAATCAGACAACATGAAAC------TCCAGTTTATAGTTATAGTAGAGGTGAGATCCT-AGAACCAAT------------------------------GTCCATCTAGTTCTGTACCAGAGGTTCTTAACTCAGTGAAACTGTTAG-CTGAAACAGACATCACATAATCATATTCCCAACATCCAAATATTTTTCATTTTCATGAAATTGAGACTTT-CCTAAATAAAAAA----GAGGAGACAGACTCCATATTTTTTTAAAAGTAAGATTTTTGTGGCTTCCTTGGCTCTATTCCCAAGTATAATGGGTAAGG-----AGCTCC-------GTCACAGATTA---------------------------------CAGCTAAAC---------------------------CCTCATTGCAATTTCTC--------TCTCTGCTCTCCTTAATATAGGTAAGGAC--------TGGGACTATAGG s canFam1.chr9 14370616 433 + 53642819 AATCTTAAAGATTCTAGAGGCAATCTGTTCTGCCCAC-CTTTGAAAATGAAATACATACCACAATT-ATGCCAAGGAAAGTGAAAGAGATTATGC----TACATACATAATAGAGATGAAATTCA-AAACAAAATCCAAAAAAGTTATG--TCTCAAATCGCT--ATCCATTTGGTACTGCACCAGGGA--TTTCATCCAATGGAACTCCTGGTCTGGAACTCAAATTATAAAATTTTATTCCCCAA-CGCCAGTATTTCACATTTTTATGAAATTGTGACCTTAAAAAAATAAGTAAATAAGAGAAAACAGATTCTA----TCTCAGAAGAAAAGTCTTTTATAGCTTCCTTGCCCCTATTCTGAACTGTATCCAATGAGGGTTTAGTTTCCCAAGAAACTAAAAGATTG---------------------------------TAACTTAGA-------------------------------AATTGTATTTCAC--------TCT-------------TAT------------------TATTAATACAGG a score=-339.0 s hg17.chr17_random 2575613 1 + 2618010 T- s canFam1.chr9 14371049 2 + 53642819 TG a score=273.0 s hg17.chr17_random 2575613 1 + 2618010 T s panTro1.chr19 42842750 1 - 82489036 T s mm5.chr11 22433736 1 - 121648857 T a score=91.0 s hg17.chr17_random 2575613 1 + 2618010 T s rn3.chr10 22228974 1 - 110733352 T a score=4551.0 s hg17.chr17_random 2575614 38 + 2618010 AAAAT-----------AGTATAACTTATCTAAC--------------------------------------AATAAGCAATGAGAAA s panTro1.chr19 42842751 38 - 82489036 AAAAT-----------AGTATAACTTATCTAAC--------------------------------------AATAAGAAATGAGAAA s mm5.chr11 22433737 87 - 121648857 AAAATGTAAATGAGAAAGCAAAGCTTATGTATCTGACTATCCACTCAGAGCATACACATCCAATCTCACCAACTAAGCAGGGTGAGG s rn3.chr10 22229088 38 - 110733352 AAAAC-----------AGCATAACGCTTCTAAA--------------------------------------ATGTAAACATGAGAAA s canFam1.chr9 14371051 38 + 53642819 AAAAT-----------AGTATACATAATCTAAA--------------------------------------AATGAGGCATAGGTAA a score=834.0 s hg17.chr17_random 2575652 11 + 2618010 TGTGG---------------AGAAGG s panTro1.chr19 42842789 11 - 82489036 TGTGG---------------AGAAGG s mm5.chr11 22433824 26 - 121648857 CATGGTTAGTGCTTGGCTACAGACCG s canFam1.chr9 14371089 11 + 53642819 CATAG---------------AGAAAG a score=274002.0 s hg17.chr17_random 2575663 674 + 2618010 CAAGTTTCAGGAAATCAAAGATCATAATTCCAGCTC----TAACCAATTTATATTTTAGCCTGCAGAAAAACAAGTTATTCCTATCAGTTA--TGTAAAGTGACTTTTCCATTTGTACGCAGGTA-GACATGGTTTG--------------CACAC------------------ACACACACACTTTAAACCCAATATATAGCTCACTCCTCCAGTCTTTATCAGCACATGCTCTGAGATCAC-------------------------------------AAAAAGCATTGA-AAGATTACTAATCACACTGACCATTTTTATGG----TGGTGGCACAAACAAATAATTGTCATTTTGTGAGCTGTAATACTAATTTTAAAAGGGGACACAAGCAAT---CAATCCACAGAATCAAAATCTGTGGACATATTATTTTCCTGATTTGTAATGAGTTGTATCTATAATTATTCATTGGCCAAATTTTCTCTTTCTTTTATTATTCTGTCAAAAGCACAATGCTTCCTATGACGATTTTCTGAAATAAGTGTTTTGTCTT-----GCACATGGAAATGGTGTGGGTCCTGCTTTGGTAACCTAAAGTTATCCCTATTTTATGAGGCATAAAACTCTTCCTCAGTAAATAAACAACTCTAATGAGATGTTTGTACGAAAACTGGCACCATCAGTGATAAAGAAAACATCCGGTGCAGTCTGTAAACACCCATTTT-GGGGGGTTATAAAACTCTCAGGAG-----AGG----AGAG s panTro1.chr19 42842800 689 - 82489036 CAAGTTTCAGGAAATCAAAGATCATAATTCCAGCTC----TAACCAATTTATATTTTTGCCTGCAGAAAAACAAGTTATTCCTATCAGTTA--TGTAAAGAGACTTTTCCATTTGTATGCAGGTA-GACATGGTTTGcacacacacaaacacacac------------------acacacacacTTTAAACCCAATATATAGCTCACTCCTCCAGTCTTTATCAGCACATGCTCTGAGATCAC-------------------------------------AAAAAGCATTGA-AAGATTACTAATCACACTGACCATTTTTAGGG----TGGTGGCACAAACAAATAATTGTCATTTTGTGAGCTGTAATACTAATTTTAAAAGGCGACACAAACAAT---CAATCCACAGAATCAAAATCTGTGGACATATTATTTTCCTGATTTGTAATGAGTTGTATCTATAATTATTCATTGGCCAAATTTTCTCTTTCTTTTATTATTCTGTCAAAAGCACAATGCTTCCTATGACGATTTTCTGAAATAAGTGTTTTGTCTT-----GCACATGGAAATGGTGTGGGTCCTGCTTTGGTAACCTGAAGTTATCCCTATTTTATGAGGCATAAAACTCTTCCTCAGTAAATAAACAACTCTAATGAGATGTTTGTACGAAAACTGGCACCATCAGTGATAAAGAAAACATCCGGTGCAGTCTGTAAACACCCATTTTGGGGGGGTTATAAAACTCTCAGGAG-----AGG----AGAG s mm5.chr11 22433850 668 - 121648857 CAAATTCTGGATGACCAAAGATCACAATT-CAGATCTTGATAACCAGTTCATATTTTGGCTC-----------AATTATTCTCATCAGTC---------------------------------TA-AAAATGA-----------------------------------------ATGCACACACTTCACATTCAGCATAAACCT---TTTCCTATGCCATGCAAGCATATGCTTCAAGCTCACTAAATTAAATTTAATTTAATTTAATTTAATTTAATTTAAAAACCACTTC-AAGATTGTTAACCACAATGACCATTTCCACAGTAGTTGGTAGCACAAACAAATACATGCAATTTAATAAGCTGTGATGTCCGTTTGTTAGGTAGACCAGAGCAAT---CAATTTTCAAAATAAAACCCTATGGG--------TTTTAATATTTCTAATGACCTCTACCTATAATTACTGATGGCTCGATTTTTCTCTTTGGTTCCTTATTCGTTCAAAAGGATAATGCTTACTATGACCATTTGCTGAAATAAGAATTTTTATCCAAGCAGCATGTGGAAATGGCGTTAGTCCTGATTTAGTAACCTGAAGTTATCCTCCTTTTACGAGGCATAAAA--CTTCCTCCATAAATAATCAACACTAATGAGATGTTTGTAGGAAAACTGGCACCTGTAGCACTAGAGAAAACAT-CGGTGTGTCCTGTAAATACCCATTTGAAGGGAGATATAAAAGTCTCAGGAGGCCAAAAGTCCTAGAC s rn3.chr10 22229218 641 - 110733352 CAAATTCTAGATGACCAAAGATCGCAATT-CAGATCTTGATAACCAATTCATAGTTTGACTC-----------AATTATTCTCATCAGTC---------------------------------TATAAAATGA-----------------------------------------ATGCACATAATTTGCACTCAGCATAGACCT---TTTCCTGTACCATGTAAGCACATACTTCAAACTCACTAAAA--------------------------------AAAAGACACTTC-AAGATTGAGATTGCTAACCGCCATTTTTACAGTGGTTGGTAGCACAAACAAATA----CAATTTAATAAGCTGTGATGTCCATTTGTAAAGTAGACAAGAGCAAT---CAATTTTCAAAATCAAACCCTGTTGGAATATTACTTTCTGTATCTCCAATGATCTCTACCTTTAATTACTGATGGCTCGATTTTTTTCTTTGGTTCCTTATTCATTCAAAAAGGTAGTGCTTCCTATGGCCGTTTGCTGAAATAAGAATTTTTATCCAAGCAGCATGTGGAAATGGCGTTAGTCCTGATTTAGTAACCTGAAGTTATCCTCCTTTTACGAGGCATACAA--CTTCCTCCGTAAATAATCAACACTAATGAGATGTTTGTAGGAAAGCTGGCATCTGCAAGGCTAGAGAAAACAT-CGGTGTGTCCTGTAAACACTCATTTGAAGGGAGATATAAAAGTCTCAGGAAGCCAAAAGTCCTAGAC s canFam1.chr9 14371100 699 + 53642819 CAAGTTTCAGGAAATCAAAGATCACAACTCCAGATCTTGATAACCAGTTTGTATTTTGGCCTGCAG-GCCACAGATTATGCCCATCAGTTATTTATAAAGTGACTTTTCAATTTGCACACAGGTA-GATGTAGTTcatacacacaca----cacacacacacacatatgcatgtgcacacacacTTTAAACCCAGTACACACCTCACTCCTCTA--CCATGTGAGCACA----ACAAGACCAT-------------------------------------AAAAAGCATTGCAAAGATGGTTAACTACATGGAACATTT-TATGA----TGGTA-CACAAACAAATAAATGGCATTTAATGAGATGTAATATGAATTTTAAAAGGATAGATAAACAATTTACAAT--ACAGGAGCAAAATCTGTGATAATATCATTTTTGTTATTTGTAATCAGTTGTATCTGCAATTACTGAGTG-CCAAATGTCCTCTGCCTTTCTGTATTCTACCAAAAAGATAATGCATCTCATGAAGATTCTCTGAACCAAGCGTCTTATCCT-ACTGGCAGATGGAAATATT----GCCCTTACTTAGTAACCTGAAGCTATGCCTCTTTTATGAGGCATAAAA--CTTCCTCAGAAAACAAACAACACTAATGA-ATGTTCATATGAAAACTGGCACCAACAGTGATAAACAGAACATCCGGTATGTTCTGTAAATACCCATTTGCAGGCTG-TATAAAAGTCTCAGGAGGG---ATG----GAGA a score=57119.0 s hg17.chr17_random 2576337 145 + 2618010 TTTT-GGAGTCAAGGC--AACTGAAG---TTTTGCAGCCAGTCTCTGTCTTTGCTTCTGGAAGGATGACTTCTGACTGCTCCTCCACACAC-TGCTCTCCTGAG-----TCCTGTGGCACGGCTTCCGGTTGTGCACCTGCCTCAAGCTGCTCCGTG s panTro1.chr19 42843489 145 - 82489036 TTTT-GGAGTCAAGGC--AACTGAAG---TTTTGCAGCCAGTCTCTGTCTTTGCTTCTGGAAGGATGACTTCTGACTGCTCCTCCACACAC-TGCTCTCCTGAG-----TCCTGTGGCACGGCTTCCGGTTGTGCACCTGCCTCAAGCTGTTCCGTG s mm5.chr11 22434518 145 - 121648857 CTTT-GGAGACTAGGCGAGACCGAAGCAATACTACATCCTGTCT-----GTTCCTTCTCAGAAGATGGCTTCCGATGGCTCCCCTAGCTGC-TGCTCTTCTGAG-----CCCTGTGCAGGGGCTTCCGGCTGCGCAACTGCCTCATTCTGCCCCACC s rn3.chr10 22229859 150 - 110733352 CTTTGGGAGACTAGGCGAGACCTAAGCAATACACCATTCAATCT-GTTCATTCCTTCTCAGAAGATGGCTTCCGAAGGCTCCCCTGACTGC-TGCTCTTCTGAG-----CCCTATGCAGGGGCATCGAGCTGCACAACTGCCTCATTCTGCCCCACC s canFam1.chr9 14371799 145 + 53642819 CTCT-GGGAACCAGTC--AATTGGAG---TTTTGCAACTAGTCTTGTTCTTCACTTCTAATAGGATGACTTCTGACTGTTTCCCCACGTGC-TGCTCTTCTGAA-----TCCTGTGCCCAGGCTTCCGACTGTGCACTTGCTTCAACCTGTTCCATG s danRer1.chrNA 376793918 132 + 390413307 TTCT-CCAGGCAGAGC--AGACGACG-------ACAGCAGGACT---------CCATCAAAATGATGTCTTCTTCATCCACCCGCACCTACATGTCCTCAGGAGGATCTTCCCGAGTCTCTGTCTCTGGTGGTGGAGCTG----GTCGTGTCACA-- a score=28054.0 s hg17.chr17_random 2576482 64 + 2618010 GAAACAGCTTGTCTCCCCGGTACCTGTGCTACATCCCGATGTCAGACTCCAAGCTTCCTATCCA s panTro1.chr19 42843634 64 - 82489036 GAAACAGCTTGTCTCCCCGGTGCCTGTGCTACATCCCGATGTCAGACTCCAAGCTTCCTATCCA s mm5.chr11 22434663 64 - 121648857 AACACAACTTGCCTCCCCAACACCTGTTCCACATCCAGATGTCAAACCCCAAGCTTCCTCTGCA s rn3.chr10 22230009 64 - 110733352 AGCACAACTTACCTTCCCAGCACCTGCGCCACATCCAGATGTCAAACCCCGAGCTTCCTCTGCA s canFam1.chr9 14371944 64 + 53642819 GAGGCCACCTGCCTCCCCAGTGCCCCTGCTACATCCAGATGCCAGACCCCTAGCTTCCTATCCA s fr1.chrUn 253378985 64 + 349519338 GGAGCAGTCCTTCTGCCCCGAAGGCGTACAGTGTGTCAGAATTTGGCTTCAGACAGCCCTCCCG s danRer1.chrNA 376794050 43 + 390413307 GGAATG------------CGTGCCGGTAGTGTGT----ATGGAGGAGCAGGAGGATCCG----- a score=242065.0 s hg17.chr17_random 2576546 298 + 2618010 GGTCTCGCGGGCTGAC-------TGGTTGCCTCCTGCCATGCTACT-TTACTGGGAGTTGTAATAGTC-------CCTGCTTGGTG---GGGAACTGTGCC--TGGTGTGAGGATGGGGTGTTCACTAGCAATGAGAAGGAGACGATGCAGTTCCTGAATGACAGACTCGCCAGCTATCTGGAGAAGGTGCGCAGCCTGGAGGAGACCAACGCAGAGCTGGAATCCAGGATCCAAGAACAAT--GTGAACAGGATATCCCAATGGTGTGCCCG-GATTATCAGCGTTACTTCAACACCATTGAAGATCTCCAACAAAAGGT----- s panTro1.chr19 42843698 298 - 82489036 GGTCTCGCGGGCTGAC-------TGGTTGCCTCCTGCCATGCTACT-TTACGGGGAGTCGTAATAGTC-------CCTGCTTGTTG---GGGAACTGTGCC--TGGTGTGAGGATGGGGTGTTCACCAGCAATGAGAAGGAGACGATGCAGTTCCTGAATGACAGACTCGCCAACTATCTGGAGAAGGTGCGCAGCCTGGAGGAGACCAACGCAGAGCTGGAATCCAGGATCCAAGAACAAT--GTGAACAGGATATCCCAATGGTGTGCCCG-GATTATCAGCGTTACTTCAACATCGTTGAAGATCTCCAACAAAAGGT----- s mm5.chr11 22434727 298 - 121648857 GGGCTTCCCTCCCAGC-------CTGTTGCCTCTCACCGTGCTACT-TGGCTGGTGGCTGTAACAGTC-------CTTGCCTGGTG---GGGAGCTGTGCA--TGGTGTGAGGAAGGATCGTTCAACAGTAATGAGAAGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCAGCTATCTGGAGAGGGTGAGAAGCCTGGAAGAGAACAACGCAGAGCTGGAGTGCAGGATCCGAGAGCAAT--GCGAGCCCAATGCCCCTCTGGTCTGCCCC-GATTATCAGCGGTACTTCGACACCATTGAAGAACTCCAACAAAAGGT----- s rn3.chr10 22230073 298 - 110733352 GGGCTCACCTCCCGGC-------CGGTTGCCTCTCACCGTGCTACT-TGACTGGCGGTTGTAACAGTC-------CTTGCCTGGTG---GGGAACTGTGCA--TGGTGTGAAGAAGGGACGTTCAACAGTAATGAGAAGGAGACCATGCAGTTCCTGAATGACAGATTGGCCAGCTACCTAGAGCGGGTGAGAAGCCTGGAAGAGAACAATGCAGAGCTGGAGTGCAGGATCCGAGAGCAAT--GTGAGCCCGATGCCACACCGGTCTGCCCG-GATTATCAGCGGTACTTTGACACCATTGAAGAGCTACAACAAAAGGT----- s canFam1.chr9 14372008 298 + 53642819 GGTCTCGCTTGCCAAC-------TAGTTGCCTCACACCATGCTACT-TTGCTGGGAATTATAATATTC-------CTTGCTTGGTG---GGGAACTGTGCT--TGGTGTGAGGATGGGGTGTTCAACAGCAATGAGAAGGAGACGATGCAGTTCCTGAATGACAGACTTGCCAACTATCTAGAGAAGGTCCGTGGCCTGGAAGAGATGAACGCAGAGCTCGAATGCAGGATTCGAGAACAAT--GTGAAGAGGATATCCCACTGGTGTGCCCT-GATTATCAGTGTTACTTTGACACTATTGAAGAGCTTCAGCAAAAGGT----- s galGal2.chr27_random 588609 293 + 721164 GGCCTGGGAGGCGGATAT----GGAGGTGCCTTCAGCA--GCAGCT-TTAGTGCAGGCTTCGGTGGTG-------GCTA--TGGCG---GGGGCTTGGGC------TCTGGTGACGGTCTCCTCTCAGGGAATGAAAAGACAACGATGCAAAACCTGAATGACCGCCTCGCGTCCTACCTGGACAAAGTGCGTGCGTTGGAAGAAGCAAACTCAGATCTTGAAACTAAAATCCGGGAGTGGT--ACCTAAAACAAGGACCAG-GCCCTGCCCGAGACTACAGCCCTTATTACAAGGCTATTGAAGACCTCCGAGACCAGGT----- s fr1.chrUn 253379049 312 + 349519338 CATCTCCTCTGCCAGCGTCCGCACCGTGTCCTCTGGGTATGGAGGTGGTGCTGGGGCTGGTGGTGGTTGCTTTGACTTGTCCAGCGCCCTGGACCTTGGCCAGCGCTCTGGTGGCGTGCAGGT------GAACGAGAAGGCCACCATGCAGAACCTGAATGACCGACTGTCCAACTACCTGGACAAGGTTCGCTCTCTGGAGGCGGCCAACGCCAAGCTGGAGATCCAGATCAGGGAGTACT--ACGAGAATAAGGGTCCCGCTGCAGAGAAG-GACTACAGCAACTACTGGGCCATCATCAATGACCTGAAGGACAAGGT----- s danRer1.chrNA 376794093 293 + 390413307 GGGTTCGCATCTCCAG-------TTCTTCTCTTTCTCGATCCTACT-CTTCTGGAAGCACTGGCTATG---------------GCG---CTGGCTTCCATC--TG-TCTGATGCCATTGACGTGTCTGCGAATGAGAAAGCCACCATGCAAAACCTCAATGACCGTCTGGCCTCCTACCTGGAGAAGGTGC-CACCCTGGAGAGGGCCAATGCAGATCTTGAGCTGAAGATCCGCCAGTTCCTGGACAGCAAGACGGCTCCC---TCTGCTCGGGACTACAGTGCCTACTATGCAACAATCAGTGACCTCCAGGTCAAGGTACTGT a score=-4276.0 s hg17.chr17_random 2576844 4 + 2618010 C-TGT s panTro1.chr19 42843996 4 - 82489036 C-TGT s mm5.chr11 22435025 5 - 121648857 TGGGT s rn3.chr10 22230371 5 - 110733352 TGGGT s canFam1.chr9 14372306 5 + 53642819 CTGGT s galGal2.chr27_random 588902 4 + 721164 A-AGT s fr1.chrUn 77130209 4 - 349519338 -ATAT s danRer1.chrNA 376794386 4 + 390413307 -ATGT a score=100.0 s hg17.chr17_random 2576848 1 + 2618010 G s danRer1.chrNA 376794390 1 + 390413307 G a score=1500.0 s hg17.chr17_random 2576848 1 + 2618010 G s panTro1.chr19 42844000 1 - 82489036 G s mm5.chr11 22435030 1 - 121648857 G s rn3.chr10 22230376 1 - 110733352 G s canFam1.chr9 14372311 1 + 53642819 G s galGal2.chr27_random 588906 1 + 721164 G a score=9965.0 s hg17.chr17_random 2576849 15 + 2618010 TCCTGTTGCCCTAGT s panTro1.chr19 42844001 15 - 82489036 TCCTGTTGCCCTAGT s mm5.chr11 22435031 15 - 121648857 TCTCACTGCCTTAAT s rn3.chr10 22230377 15 - 110733352 TCTCACTGCCCTAAT s canFam1.chr9 14372312 15 + 53642819 TTTCATTGCCCTAAT s danRer1.chrNA 376794391 15 + 390413307 ACATGTTAGCCAAGT a score=48187.0 s hg17.chr17_random 2576864 195 + 2618010 GCTCCACC----------TTCCTGATCTATGGTTTGCTTTATCTTTCTACT--AGAAGGGGCTGTTTTACAGAAGG-------AAACCAAGGGAAAGGAAAATTCTAAGAGTTAGTGATACATAGgggagagcaccggactgaaagtcagaaaacctcagcatcagccccagagctacccctgattactgagtgactataataaagtaacttgc s panTro1.chr19 42844016 195 - 82489036 GCTCCACC----------TTCCTGATCTATGGTTTGCTTTATCTTTCTACT--AGAAGGGGCTGTTTTACAGAAGG-------AAACCAAGGGAAAGGAAAATTCTAAGAGTTAATGATACATAGgggagagcaccggactgaaagtcagaaaacctcagcatcagccccagagctacccctgattactgagtgactataataaagtaacttgc s mm5.chr11 22435046 148 - 121648857 GTTTCCCA----------TTTCTGATTTCT-------CTCATAGCTATACT--GGGGCAGGTTGCTTTGTGGATGT-------AAAACAAAGGAAAGAGGGATTCCCAGAGCTAG------------------------------GTCAAATAA--TCAGTCTCATTCTCTG--------CGAATTATTGGGTGACTATAGAAATGTCACCTTG s rn3.chr10 22230392 165 - 110733352 GTTTCCCAATGTTCTCTGTTTTCCAATTCTGTTTTCTCTCATAGCTGTACT--AGGGCAGGTTGCTTTGTGGATGT-------AAAACAAAGGAAAGGGGGATTCCCAGAGTTAG------------------------------TTCAAATAA--TCAATCTCATTCTCAG--------AGAATTATTGGGTGACTATAGAAATGTCACCTTG s canFam1.chr9 14372327 190 + 53642819 GCTTCACC----------CTCCCAATCTGTGATTTGCTTTATCTTTATACTAAAAAAAAGGCTGTTCTATGGAAGTTCCCCCCATCCCCAGGGAAAGGGGTTCTCCAGGAGGAAA--------------AGGTGGTGGGCTGAAATTCAGCAAAAATTAGCATGAGCCGTGGGGCTGCCAGTAATCATTGAATGGCCAAAATAAACTCACTCAC a score=33827.0 s hg17.chr17_random 2577059 149 + 2618010 ctgtagacttttccttcatcatctatagaatgcagaaaaactgtattata------tccaaaatcgcttTTGTACGTGACACTGAACATTTACATTATCTG-AACACAGATCATGAAATGCCATCTTTTTAACT--ACCTAGTAATCATTTTCT-TCTC s panTro1.chr19 42844211 149 - 82489036 ctgtagacttttccttcatcatctatagaatgcagaaaaactgtattata------tccaaaatcgcttTTGTACGTGACACTGAACATTTACATTATCTG-AACACAGATCATGAAATGCCATCTTTTTAACT--ACCTAGTAATCATTTTCT-TCTC s mm5.chr11 22435194 148 - 121648857 CTATAGACT---------TCGTCTACAGTGTG-AGGGAAATTGAATTATGATATCTTCTAAAATCTGTTCTGCATGTATCATTGCATATTTATATTCTTTACCAAACAGGT-ATTGAATACCATCCATTTGAGTTCACCTAGTAATCGTTCTCTATTTG s rn3.chr10 22230557 144 - 110733352 CTGTAGACT---------TTGTCTACACTGTG-AAGGAAATTGAGTTATGACGTCTTCTAAACCCCATTCTTCATGTATCATTGCGTGTTTATATTCTTTATCAAACAGAT-ATTGAATGCCATCCATTTGAGT---TCTGGAAATCGTTCTCTATTT- a score=-411.0 s hg17.chr17_random 2577208 7 + 2618010 TC---CATGA s panTro1.chr19 42844360 10 - 82489036 TCCTTCACGA s mm5.chr11 22435342 7 - 121648857 TT---GATGA s rn3.chr10 22231062 7 - 110733352 ---TTGATGG a score=4670.0 s hg17.chr17_random 2577215 38 + 2618010 ATTTCTATTATTATGGGAGAGGATATACTCATAATACA s panTro1.chr19 42844370 38 - 82489036 ATTTCTATTATTATGGGAGAGGATATACTCATAATACA s rn3.chr10 22231069 34 - 110733352 ATTTCTGTGACCACAG----AGATGCAATTCTAACAAA a score=15728.0 s hg17.chr17_random 2577253 64 + 2618010 AACTACTGATGGAGAAAACATTAATGGTGTTCAACTGCCTGAGAATGTTGCAAAATGTCTTATG s panTro1.chr19 42844408 64 - 82489036 GACTACTGATGGAGAAAGCATTAATGGTGTTCAACTGCCTGGGAATGTTGCAAAATGTCTTATG s rn3.chr10 22231103 64 - 110733352 CACTAGCAGTGTGGGAAACTTCAACAAAGCTCAAAAGCCAGTGATGGTGACAAAATGCCCTGCA s canFam1.chr9 14372517 60 + 53642819 AACTACCTATGGAGAAAAATCCAA----GTTCAACTGCCAAGGAATATTGCAAAATGTTTTAGG a score=4794.0 s hg17.chr17_random 2577317 16 + 2618010 TTATTAAAAAACTAAA s panTro1.chr19 42844472 16 - 82489036 TTATTAAAAAACTAAA s rn3.chr10 22231167 16 - 110733352 TCACTGATAAAGGAAA s canFam1.chr9 14372577 16 + 53642819 CCACTGAAAAACGGAC s danRer1.chr5 1527220 16 - 40038624 TTATTAAATTATTACA a score=-369.0 s hg17.chr17_random 2577333 3 + 2618010 CCT-- s panTro1.chr19 42844488 3 - 82489036 CCT-- s mm5.chr11 22435784 3 - 121648857 CTC-- s rn3.chr10 22231183 3 - 110733352 CCT-- s canFam1.chr9 14372593 3 + 53642819 CCT-- s danRer1.chr5 1527236 3 - 40038624 --TGT a score=50984.0 s hg17.chr17_random 2577336 146 + 2618010 TTTTATTTCATTATTTTGTTTCTAAATTGGCTCTG------CTTTTTTTCTTCATGAAGTGACAAGGTTAATAAAAAAAAGCAGGCTGAGGGTGATTTTATACT----------TTCTTATAAAGACTTTCA---AAAGATAGCTAATGGCATAG--CTGTTGGATA s panTro1.chr19 42844491 145 - 82489036 TTTTATTTCATTATTTTGTTTCTAAATTGGCTCTG------CTTTTTTTCTTCGTGAAGTGACAAGGTTAAT-AAAAAAAGCAGGCTGAGGGTGATTTTATACT----------TTGTTATAAAGACTTTCA---AAAGATAGCTAATGGCATAA--CTGTTGGATA s mm5.chr11 22435787 151 - 121648857 TTTTATTTCTGTATTTTGTTTCTAGGTTGGCACTGAATGTTTTTCTTTCCTTCATGTAGTGGTGTAGTTAAT-AGGAAACCTGGGTTGAAAGAGATGTTATGTT----------AACTTGGAAAGACTTCCA---TAAACTAGTGAATGGTATGG--CTATTAAAAC s rn3.chr10 22231503 149 - 110733352 TTTTGCTTCTGTATTTTGTTTCTCAATTGGCACTGAATG--TTTTTTTATTCTGTGAAGTGGCACAGTTAAT-AGGAATCATGGGTTGGAAGAGACATTATGTT----------AACTTGGAAAGACTTTCA---TAAACTAATGAGTGGCAAGG--CTGTTAAAAT s canFam1.chr9 14372596 144 + 53642819 TTTTATTTCTATATTTATTTTATGAA-TGGTCCTG------CTTTTTTCTTCATTGAAGTGACATGCTTAAT-AAGAAAAATAGGCTTCAAGCTATTTTATACT----------GTCTTATAAAGACTTTTA---AAAGATAAATAATGGTATAG--TTGTTAAATG s danRer1.chr5 1527239 149 - 40038624 ACTTACTATATTGTTGGGGTTGGAATGTGGGTTAG------GTT---------AAGGGTTAGTTACATTAA--AATAAGCACAATTCGTTGTAATTACTATAGTAAACGGATGGAACGTGTAACTACGTCCATCTAAACATGCTGAGTGTCAGATTCTTGTGAAAT- a score=17739.0 s hg17.chr17_random 2577482 55 + 2618010 GAAGTTTACTTAGGTTTCTCTCAAAGAA-TCATTTATCACAT---AATGACTTGCTTCC s panTro1.chr19 42844636 55 - 82489036 GAAGTTTATTTAGGTTTCTCTCAAAGAA-TCATTTATCACAT---AATGACTTGCTTCC s mm5.chr11 22435938 52 - 121648857 AGA---TATGTGGGTTTCTTCTAAAGAG-CTGTTCATTAAAT---GGTGACTTACCTCT s rn3.chr10 22231652 52 - 110733352 AGA---TATGTGGATTTCTTCTAAAGAG-CTCCTCACTAAAT---GATGACTTACCTCT s canFam1.chr9 14372740 58 + 53642819 AATAAATATTTAAGTTTCTTTCAAAGAG-CCCTCTAGTATATATAACTAACTTACTTAC s danRer1.chrNA 376794495 55 + 390413307 -GAGATCAAATTTGCACCTTTTAAAAAATTTATTCATCCTGT---GCCACTACAGATCC a score=29485.0 s hg17.chr17_random 2577537 46 + 2618010 CAG-ATCTTATGCACGAAAGCAGAGAATTCTAGACTTGCTGTACAGC s panTro1.chr19 42844691 46 - 82489036 CAG-ATCTTATGCACGAAAGCAGAGAATTCTAGACTTGCTGTACAGC s mm5.chr11 22435990 46 - 121648857 TAG-ATATTGTGCACAAAGGCAGAGAATTCTAGACTTGCCGTTCAGG s rn3.chr10 22231704 46 - 110733352 TAG-ATATTGTGCACGAAGGCAGAGAATTCTAGACTTGCCGTGCAGG s canFam1.chr9 14372798 46 + 53642819 CAG-ATCTTATGCACGAAGGCAGAAAATTCCAGACTTGCTGTGCAAC s galGal2.chr27_random 590358 46 + 721164 CAG-ATCCTTGCTGCCACTATCGACAACTCGAAGGTTGTCCTGCAGA s danRer1.chrNA 376794550 39 + 390413307 -AGCATGCTACTGGTTTAAACGGAGGGATCTACCTCAGCA------- a score=80009.0 s hg17.chr17_random 2577583 45 + 2618010 TTGACAACTGCAAACTGGCCACTGATGACTTTAAGTCAAAGTAAG s panTro1.chr19 42844737 45 - 82489036 TTGACAACTGCAAACTGGCCACTGATGACTTTAAGTCAAAGTAAG s mm5.chr11 22436036 45 - 121648857 TGGACAACTGCAAACTGGCTGCTGATGATTTCAGGTCAAAGTAAG s rn3.chr10 22231750 45 - 110733352 TGGACAACTGCAAACTGGCTGCCGATGATTTTAGGTCAAAGTAAG s canFam1.chr9 14372844 45 + 53642819 TTGACAACTGCAAACTGGCTGCTGATGACTTTAGGTCAAAGTAAG s galGal2.chr27_random 590404 45 + 721164 TTGACAATGCCAGACTGGCCGCTGACGACTTCAAGACCAAGTGAG s fr1.chrUn 77130394 45 - 349519338 TTGATAATGCAAAATTGGCAGCCGATGACTTTAAAACCAAGTGAG s danRer1.chrNA 376794589 45 + 390413307 TTGACAACGCCAAGCTGGCTGCCGATGACTTCAGAGTCAAGTAGG a score=91.0 s hg17.chr17_random 2577628 1 + 2618010 T s danRer1.chrNA 376794634 1 + 390413307 T a score=91.0 s hg17.chr17_random 2577628 1 + 2618010 T s fr1.chrUn 127667304 1 + 349519338 T a score=1365.0 s hg17.chr17_random 2577628 1 + 2618010 T s panTro1.chr19 42844782 1 - 82489036 t s mm5.chr11 22436081 1 - 121648857 T s rn3.chr10 22231795 1 - 110733352 T s canFam1.chr9 14372889 1 + 53642819 T s galGal2.chr27_random 590449 1 + 721164 T a score=-1604.0 s hg17.chr17_random 2577629 3 + 2618010 TTA s panTro1.chr19 42844783 3 - 82489036 tta s mm5.chr11 22436082 3 - 121648857 CAA s rn3.chr10 22231796 3 - 110733352 CAA s canFam1.chr9 14372890 3 + 53642819 TAA s galGal2.chr27_random 520990 3 + 721164 CAA s fr1.chrUn 127667306 2 + 349519338 TA- s danRer1.chrNA 376794635 3 + 390413307 TAC a score=-123.0 s hg17.chr17_random 2577632 1 + 2618010 A s danRer1.chrNA 376794638 1 + 390413307 T a score=910.0 s hg17.chr17_random 2577632 1 + 2618010 A s panTro1.chr19 42844786 1 - 82489036 a s mm5.chr11 22436085 1 - 121648857 A s rn3.chr10 22231799 1 - 110733352 A s canFam1.chr9 14372893 1 + 53642819 A a score=91.0 s hg17.chr17_random 2577633 1 + 2618010 T s rn3.chr10 22231800 1 - 110733352 T a score=837.0 s hg17.chr17_random 2577633 4 + 2618010 TTTA s panTro1.chr19 42844787 4 - 82489036 ttta s canFam1.chr9 14372894 4 + 53642819 TTTG s danRer1.chrNA 376794639 4 + 390413307 TGCA a score=546.0 s hg17.chr17_random 2577637 2 + 2618010 At s panTro1.chr19 42844791 2 - 82489036 at s danRer1.chrNA 376794643 2 + 390413307 AT a score=27993.0 s hg17.chr17_random 2577639 308 + 2618010 tttattttatttatttattttgagatggagtttcactcttgtcacccaggctagagctcaatggtgctatctcagctcactgcaacctctgcctcctgggttcaagtggttctcctgcctcagcctcctgagtagccgggattacaggcaggcgtgcaccgccacacctagctaatttttgtatttttagtagagacagggtttcaccatgtgggccaggttggtctcgaactcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgggattacaggcatgagccaccacgcccggct s panTro1.chr19 42844793 308 - 82489036 ttaatttagtttatttattttgagaaggagtttcactcttgtcacccgggctagagcgcaatggtgctatctcggctcactgcaacctctgcctcctgggttcaagtggttctcctgcctcagcctcctgagtagccgggattacaggcaggcgtgcaccgccacacctagctaatttttgtatttttagtagagacagggtttcaccatgtgggtcaggttagtctcgaactcctgacctcaggtgatctgcccgccttggcctcccaaagtgctgggattacaggcatgagccaccacgcccggct a score=937.0 s hg17.chr17_random 2577947 5 + 2618010 TTAAT s panTro1.chr19 42845101 5 - 82489036 TTAAT s mm5.chr11 22436134 5 - 121648857 TTAAA a score=-15.0 s hg17.chr17_random 2577952 3 + 2618010 TTT- s panTro1.chr19 42845106 3 - 82489036 TTT- s mm5.chr11 22436139 3 - 121648857 TTT- s danRer1.chrUn 142377801 3 + 367113659 -TTG a score=8136.0 s hg17.chr17_random 2577955 30 + 2618010 AATTTGAAAATAACTTATGG----CTCTCTCTCT s panTro1.chr19 42845109 34 - 82489036 AATTTGAAAATAACTTATGGctctctctctctct s mm5.chr11 22436142 30 - 121648857 AATTAGAAAATAATTTATAA----AATTATAATT s canFam1.chr9 14372898 30 + 53642819 AATTTGAAAATAATTCATGG----CTGtctctct s danRer1.chrUn 142377804 30 + 367113659 TATCTGAGTCTAAATTCTTC----ATCTGTTTGT a score=3180.0 s hg17.chr17_random 2577985 17 + 2618010 CTCAATCTCTCTCTCTc s panTro1.chr19 42845143 16 - 82489036 ctcaatctctctctct- s canFam1.chr9 14372928 17 + 53642819 ctctctctctctctcac s danRer1.chrUn 142377834 17 + 367113659 CTTCAGATCTCCCTTGC a score=2239.0 s hg17.chr17_random 2578002 18 + 2618010 acacacacacacacacac----------------- s panTro1.chr19 42845159 17 - 82489036 -ctcACACACACACACAA----------------- s canFam1.chr9 14372945 35 + 53642819 acacacacacacacacacacacacatgcacacTAC a score=910.0 s hg17.chr17_random 2578020 1 + 2618010 a s panTro1.chr19 42845176 1 - 82489036 A s mm5.chr11 22436203 1 - 121648857 A s rn3.chr10 22231915 1 - 110733352 A s canFam1.chr9 14372980 1 + 53642819 A a score=5001.0 s hg17.chr17_random 2578021 8 + 2618010 ---AATATTCT s panTro1.chr19 42845177 8 - 82489036 ---AATATTCT s mm5.chr11 22436204 8 - 121648857 ---AATATTCT s rn3.chr10 22231916 8 - 110733352 ---AATATTTT s canFam1.chr9 14372981 8 + 53642819 ---AATATTCT s danRer1.chrUn 142377858 8 + 367113659 GACAATGC--- a score=13313.0 s hg17.chr17_random 2578029 29 + 2618010 CTATATAA--TA--T---TTTAA---AGTTAAGAATGTT s panTro1.chr19 42845185 29 - 82489036 CTATATAA--TA--T---TTTAA---AGTTAAGAATGTT s mm5.chr11 22436212 30 - 121648857 CTGCATAA--TA-TT---TTTTT---AACTGAGAATGAT s rn3.chr10 22231924 32 - 110733352 CTGCATAA--TA--TATATTTTT---AACTGAGAATGTT s canFam1.chr9 14372989 31 + 53642819 CTACATAAGCTT--T---TTTTA---AGCTAAGAATGCT s galGal2.chr27_random 629888 32 + 721164 TTGCAGAA--TA--T---GTTAACAGAATTACTAATACT s danRer1.chrUn 142377866 28 + 367113659 ---CAGAA--TCATC---CTTCA---GATTGATAATGCC a score=0.0 s hg17.chr17_random 2578058 11 + 2618010 TTAAAAGCTTG a score=-4664.0 s hg17.chr17_random 2578058 8 + 2618010 TT-AAAAGC s panTro1.chr19 42845214 8 - 82489036 TT-AAAAGC s mm5.chr11 22436242 6 - 121648857 T---GAACC s rn3.chr10 22231956 6 - 110733352 T---GAACC s canFam1.chr9 14373020 8 + 53642819 CA-CAAAGC s galGal2.chr27_random 629920 9 + 721164 ATGAGAATT a score=2553.0 s hg17.chr17_random 2578066 3 + 2618010 TTG s panTro1.chr19 42845222 3 - 82489036 TTG s mm5.chr11 22436248 3 - 121648857 TTG s rn3.chr10 22231962 3 - 110733352 CTG s canFam1.chr9 14373028 3 + 53642819 TCA s galGal2.chr27_random 629929 3 + 721164 TTG s fr1.chrUn 127667397 3 + 349519338 TGG a score=-40788.0 s hg17.chr17_random 2578069 98 + 2618010 AATTTATCATT-----ACTTAGGAATTA-AG-------AGAAATT-ATGC--ACATGGCTTCCTGAAGTCCGTGTGTCGATCCTC--CAT--------------GTATCCCCACACTTTGCACA---G-CGTTC s panTro1.chr19 42845225 98 - 82489036 AATTTATCATT-----ACTTAGGAATTA-AG-------AGAAATT-ATGC--ACATGGCTTCCTGAAGTCCATGTGTCGATCCTC--CAT--------------GTATCCCCACACTTTGCACA---G-CGTTC s mm5.chr11 22436251 89 - 121648857 AACTCACCATC-----ATTTGGAATGCA-AG-------GGAAATTGAGGC--ACGTGGCTCCCTGGAGTCCATGTGTCATCTTCC--CCT--------------GCACCCCAGCACT--------------TTT s rn3.chr10 22231965 89 - 110733352 AACTCACCTTC-----ATTTGGAATGTA-AG-------GAAAATTGAGGC--GTGTGACTCTCTGGAGGCCATGTGTCATCCAAC--CCT--------------GCATCCCAGTACT--------------CTG s canFam1.chr9 14373031 72 + 53642819 CATT-------------------------------------AATT--GGG--ATATAGCTTCCTTGAGTCGTtgtgtcattcatcagcat--------------g---cccagcatcttgcaca---g-tgtct s galGal2.chr27_random 629932 63 + 721164 --------TTC-----ATTAAGATTTCATAG-------CAAAAGC-----------------------TATATGAGTAGAGTAACAGTGT--------------GCATTTGACCACA--------------TTA s fr1.chrUn 127667400 107 + 349519338 AAGTCAACAT------------GAAACT-GG-------AAGAACTGGTTCTGAGGTGGCTTCCTG----CGTCACGTCGACTCTC--TTTTGTTGTGGCTGTTGGTGGTAACACAGTTTGTGCGGGTG-CATTT s danRer1.chrUn 142377894 102 + 367113659 AATTTGTCAGCTGAGGACTTCAGAGTCA-AGTTAGTACAACAAACAATGC--ATTTCAAAACCTT---TCTAAGGAATTCTCTTC--TAT--------------GAGGTCCTAGATT----------GCCATTC a score=1285.0 s hg17.chr17_random 2578167 2 + 2618010 AG s panTro1.chr19 42845323 2 - 82489036 AG s mm5.chr11 22436340 2 - 121648857 AG s rn3.chr10 22232054 2 - 110733352 AG s canFam1.chr9 14373103 2 + 53642819 ag s galGal2.chr27_random 629995 2 + 721164 GC s fr1.chrUn 127667507 2 + 349519338 AA a score=-5207.0 s hg17.chr17_random 2578169 16 + 2618010 CAAAGTAAGCG-----TTGGA s panTro1.chr19 42845325 16 - 82489036 CAAAGTAAGCG-----TTGGA s mm5.chr11 22436342 16 - 121648857 CCGACTAAGCC-----CCTCC s rn3.chr10 22232056 16 - 110733352 CCAATTAAGCC-----ACTTC s canFam1.chr9 14373105 16 + 53642819 caAAATAAGCA-----CCATC s galGal2.chr27_random 629997 21 + 721164 CACATTAAAAGGATATTTAAT s fr1.chrUn 127667509 14 + 349519338 CAAGG--AGCC-----GTGTG s danRer1.chrNA 376794677 11 + 390413307 CAAAGTACTCA---------- a score=4042.0 s hg17.chr17_random 2578185 13 + 2618010 TTTCTCTTTTGC----T s panTro1.chr19 42845341 13 - 82489036 TTTCTCTTTTGC----T s mm5.chr11 22436358 16 - 121648857 CCTCCCTTTCTCCTG-T s rn3.chr10 22232072 17 - 110733352 CCTCCCTTTCTCCTACT s canFam1.chr9 14373123 13 + 53642819 TATCTCTTTTGC----T s galGal2.chr27_random 630018 12 + 721164 TACTTATTTTTC----- s fr1.chrUn 77130542 13 - 349519338 TTTCTTTCTTAC----A s danRer1.chrNA 376794688 13 + 390413307 TTTCAGTTTTAC----T a score=-1500.0 s hg17.chr17_random 2578198 5 + 2618010 -GTGAA s panTro1.chr19 42845354 5 - 82489036 -GTGAA s mm5.chr11 22436374 5 - 121648857 -CTGAA s rn3.chr10 22232089 5 - 110733352 -CTGAA s canFam1.chr9 14373136 5 + 53642819 -GTGAA s fr1.chrUn 77130555 2 - 349519338 ----CA s danRer1.chrNA 376794701 5 + 390413307 TGTGC- a score=240779.0 s hg17.chr17_random 2578203 165 + 2618010 AGGTACGAGAGTGAACTGTCCCTTCGCCAGCTGTTAGAGGCTGACATCAGCAGCCTGCATGGGATCCTGGAGGAACTGACCCTGTGCAAATCTGATCTGGAGGCCCATGTGGAGTCTCTGAAGGAAGATCTCCTTTGCCTTAAGAAAAACCATGAAGAGGTAAGG s panTro1.chr19 42845359 165 - 82489036 AGGTACGAGAGTGAACTGTCCCTTCGCCAGCTGTTAGAGGCTGACATCAGCAGCCTGCATGGGATCCTGGAGGAACTGACCCTGTGCAAATCTAATCTGGAGGCCCATGTGGAGTCTCTGAAGGAAGATCTCCTTTGCCTTAAGAAAAACCATGAAGAGGTAAGG s mm5.chr11 22436379 165 - 121648857 AGATATGAGAGCGAACTGTCCCTGCGCCAGCTGGTGGAGAACGACATCACTGGCCTTCGTGGGATCCTGGGTGAACTGACCCTGTGCAAGTCAGATCTAGAGGCCCACGTGGAGTCTATGAAAGATGATCTGATTTGCCTTAAGAAAGGCCATGAAGAGGTGAGC s rn3.chr10 22232094 165 - 110733352 AGGTATGAGAGCGAACTGTCCCTGCGCCAGCTGGTAGAGAATGACATCAGTGGTCTTCGTGGGATCCTGGGTGAACTGACCCTGTGCAAGTCAGATCTGGAGGCCCATGTGGAGTCTCTGAAAGATGATCTACTTTGCCTTAAGAAAGACCATGAAGAGGTGAGT s canFam1.chr9 14373141 165 + 53642819 AGGTATGAGTCTGAACTGTCTCTTCGCCAGCTGATAGAGACGGACATTGGTGGCCTGCGTGGGATCCTGGATGAGCTGACTCTGTGCAAAGCTGATCTAGAGGCCCATGTGGAGTCTCTGAAGGAAGATCTCCTTTGCCTTAAGAAAAACCACAAAGAGGTAAGG s galGal2.chr27_random 521255 165 + 721164 AGGTTTGAGACGGAGCAGGCCCTGCGTCTGAGCGTGGAGGCCGACATCAACGGGCTGCGCAGGGTGCTGGATGAGCTGACCCTGTCCAGGGCTGACCTGGAGATGCAGATTGAGAACCTGAAGGAGGAGCTAGCCTACCTGAAGAAGAACCACGAGGAGGTGAGC s fr1.chrUn 77130558 165 - 349519338 AGATATGAGAATGAGCTGGCCATGCGTCAGTCAGTGGAGGCCGATATTGCCGGTCTGAAGAAACTCTTGGATGAGTTGACTTTGGCCAGATCAGACCTGGAGATGCAGATAGAAGGACTCAGAGAGGAGCTGATCTTCCTCAAAAAGAACCATGAGGAGGCATGT s danRer1.chrNA 376794706 165 + 390413307 AGGTATGAGAATGAGCTGAGCATGAGGCAGTCTGTGGAAGCAGACATCGCTGGCTTGAGGAGGGTGCTGGATGAGCTCACAATGACCAGATCTGACCTGGAGTTGCAGATCGAGGGTCTGAGAGAAGAACTGATCTTCCTCAAGAAGAACCACGAGGAGGTAAAG a score=2445.0 s hg17.chr17_random 2578368 3 + 2618010 AAA s panTro1.chr19 42845524 3 - 82489036 AAA s mm5.chr11 22436544 3 - 121648857 GAA s rn3.chr10 22232259 3 - 110733352 GGA s canFam1.chr9 14373306 3 + 53642819 AAA s galGal2.chr27_random 521420 3 + 721164 GCA s fr1.chrUn 77130723 3 - 349519338 AAA a score=-1684.0 s hg17.chr17_random 2578371 19 + 2618010 GTGGCAACTCCGCTGAAGG s panTro1.chr19 42845527 19 - 82489036 GTGGCAACTCCGCTGAAGG s mm5.chr11 22436547 18 - 121648857 GTGGCCGCTGGGCC-AAAG s rn3.chr10 22232262 18 - 110733352 GTGGCCGCTGGGCC-AAAG s canFam1.chr9 14373309 18 + 53642819 GTGTAAAAT-TGCTGAATG s galGal2.chr27_random 521423 19 + 721164 GTGCCGGTACCCCCTGGGG s fr1.chrUn 240921798 14 - 349519338 ATGATAACACCTCA----- a score=1166.0 s hg17.chr17_random 2578390 20 + 2618010 ACTCCGAGAGTAACGTACTT s panTro1.chr19 42845546 20 - 82489036 ACTCCGAGAGTAACGTACTT s mm5.chr11 22436565 15 - 121648857 ACTACAGGAAGGGC-----T s rn3.chr10 22232280 15 - 110733352 ACTATAGGAGGAGT-----T s canFam1.chr9 14373327 20 + 53642819 AATGTGGAGGTGACAAAGTC s fr1.chrUn 240921812 19 - 349519338 ACTCTGGAGAT-ACGTAGTT a score=31287.0 s hg17.chr17_random 2578410 72 + 2618010 ACATTGACAGATGATCTGTTGATGTTTGTAAATCGAATTTGGGCAGATGTTGTTTAAGCTGGAATAAAACTA s panTro1.chr19 42845566 72 - 82489036 ACATTGACAGATGATCTGTTGATGTTTGTAAATCGAATTTGGGCAGATGTTGTTTAAGCTGGAATAAAACTA s mm5.chr11 22436580 66 - 121648857 CTGCTGAGAGAT------CTCATATGTATAAACTGAACAGGGACAAATACTGCCTAAGCTGGAACAGACCTA s rn3.chr10 22232295 66 - 110733352 CTGTTGAGAAAT------CTCATGTGTATAAATTGAACAGGGACAGACACTGCCTATACTGGAACAAAACTA s canFam1.chr9 14373347 71 + 53642819 AAACTGATAGAT-TTCGTTTTGTGTATATAAATCAAACTCGGGCAGATATTGCTAAAGCTGGAACAAAATTA a score=2084.0 s hg17.chr17_random 2578482 8 + 2618010 CTTGAGGC s panTro1.chr19 42845638 8 - 82489036 CTCGAGGC s canFam1.chr9 14373418 8 + 53642819 CTCGAGGC a score=29347.0 s hg17.chr17_random 2578490 320 + 2618010 AGggccaggcatggtggctcacacctgtaatccaagcactttgggaggctgaggcaggaggatcacaaggtcaggagttcgagaccagcctgaccaatatgatgaaacctcatctctactaaaaatacaaaaattagctgggcatggtggcaggcgcctgtagtcctagctactcgggaggctgaggcaggagaatcacttgaactcaggaggcggaggttgcagtgagccgagatcttaccactgcactccagcctgggtgacagggcgagactccatctcaaaaaacaaacaaacaaacaaacaaacaaaAACTACTC s panTro1.chr19 42845646 316 - 82489036 AGggccaggcatggtggctcacgcctgtaatccaagcactttgggaggctgaggcaggaggatcacaaggtcaggagttcgagaccagcctgaccaatatgatgaaacctcatctgtactaaaaatacaaaaattagctgggcatggtggcaggcgcctgtagtcctagctactcgggaggctgaggcaggagaatcacttgaactcaggaggcggaggttgcagtgagccgagatcttaccactgcactccagcctgggtgacagggcgagactccatctcaaa----aaacaaacaaacaaacaaacaaaAACTACTC a score=2677.0 s hg17.chr17_random 2578810 8 + 2618010 GAGGCATT s panTro1.chr19 42845962 8 - 82489036 GAGGCATT s mm5.chr11 22436646 8 - 121648857 AAGACGTG s rn3.chr10 22232361 8 - 110733352 GAGACATT a score=20605.0 s hg17.chr17_random 2578818 91 + 2618010 ATTACTATTCAACCTGATCATTCCAGTGTGTCTC----------T-GATTTAAGG------------TGTGAAATAACCCCTAGACAGCGCCAGAGGAAGGAATCAAACTCTTC s panTro1.chr19 42845970 91 - 82489036 ATTACTATTCAACCTGATCATTCCAGTGTGTCTC----------T-GATTTAAGG------------TGTGAAATAACCCCTAGACAGTGCCAGATGAAGGAATCAAACTCTTC s mm5.chr11 22436654 112 - 121648857 CTCATTGCGTAGCATGATTGCCCCAGTGTCTTTCAAGGTAGATGT-GGTGCACAGCGGGTATCATTATGTAAGACAACCCTCAG-CAGTGCCAGGGAGGTGAGGCCACTCTTTC s rn3.chr10 22232369 108 - 110733352 CTCACTGTGTAGCATGATTGCCCCAGTGTCTCTCAAGGTAGATGT-GATGTACAGCATGCATC----ATTAACATAACCCTCAT-CAGTGGCACGGAGGTGAGGTCACTCTTTT s canFam1.chr9 14373426 90 + 53642819 ACTAATGTCCAGCCTGATGACTCTGGCATATCTC----------TGGGTGTATA-------------TGTGAAATGGGCCCTGGCTAGTACCACTTGAAAGA-CCAAATTGTTC a score=69484.0 s hg17.chr17_random 2578909 185 + 2618010 TCCTGCCCTTGCCTTTGTGGAGGAGGTAACTTCACAAATGGCTTCCTTTGGAGGCTTTATGCCACCCCTAGCTCCAGTCCACAGGGTATGAAAATCAGGCTGA-GGA-ACAGACTGTGAAGTCCATTTCAAAAAAGGGATAAA-GACTGTGCACTATCTGGACCAGTGTTTTTAAATATTCCGCATTT s panTro1.chr19 42847387 185 - 82489036 TCCTGCCCTTGCCTTTGTGGAGGAGGTAACTTCACAAATGGCTTCCTTTGGAGGCTTTATGCCACCCCTAGCTCCAGTCCACAGGGTATGAAAATCAGGCTGA-GGA-ACAGACTGTGAAGTCCATTTCAAAAAAGGGATAAA-GACTGTGCACTATCTGGACCAGTGTTTTTAAATATTCCGCATTT s mm5.chr11 22436766 167 - 121648857 TCCTGCCATTGCTTGGGT-AAAGATGTAATCCGACTCGTGGTTTTCTCCGTAAGCTCTAT-----------------TGTATAAG--AAGAAAATTGAGCTGATTAA-ACAGGCTGCGTATCCCATTCCAAAAGAGGGACAAATAATCATGCAATATTTGGGATCATGTTTTCAGGTACTGTGCATTT s rn3.chr10 22232477 166 - 110733352 TCCTGCCATTGCTTGGGT-TGAGAAGTAACTCAACTCATGGTTTTTT------------------CCATAGCTCTATTGTATAAC--AAGGAAATTGAGCTGATAAA-ACTGACTGTGTATCCCCTTCCAAAAAAGGGATAAACAATCACACAATACTTGGAATCATGTTTGTAGGTATTGTGTGTTT s canFam1.chr9 14373516 186 + 53642819 ACCTGCTATTGCTTTCGTGAAGGAGGTAACTTTACAAATGGCTTTCCTTGGAGGCTTTATGCCA--CATAACTCTAATCCATAAGCTACAAAAATCAGGCTGATAAACACAGGGCATGAAGGCCATTTCAGAAAGGGGATAACATCTTATGCAATATTTGGACCAATATTTTAAAATATTCTACATCT a score=13638.0 s hg17.chr17_random 2579094 113 + 2618010 ATAAACTTCTAA----AAATCATAAAATATACAGCCACTGA------TATATTGATAAAGCTAGAAAATGAAA-------------AGCTGAATGATGTAACAAAG--TACATT-------TGCTCT-----TTGAACGTTTGTTGATGA s panTro1.chr19 42847572 113 - 82489036 ATAAACTTCTAA----AAATCATAAAATATACAGCCACTGA------TATATTGATAAAGCTAGAAAATGAAA-------------AGCTGAATGATGTAACAAAG--TACATT-------TGCTCT-----TTGAACATTTGTTGATGA s mm5.chr11 22436933 82 - 121648857 ATAATCGTGTTT----GTATCATAAACT---------------------------------------ACGAAA-------------TACAGAATGATGTAACAAAG--TAAAACAAA---GTTCACT-----CTGAATATT--TTGATGG s rn3.chr10 22232643 85 - 110733352 ATAATTTGATTC-----TGTCATAAGCTAT---------------------------------TAAAATGAGA-------------AGCAGATTGATGTAACAAAGAAAAAATT-------TACTCT-----TTGAATATT--TTGATGG s canFam1.chr9 14373702 118 + 53642819 ATAAACTTTCTA-----AATCATAAAATACGAAGTATATGACTATCTCATGTTGATAAAGCTAAAAAGTGAAA-------------AACTTAATGATGTAAAATGG--TATATT-------TTCCCT-----TTGAGCATGTGTTGatga s fr1.chrUn 240922286 136 - 349519338 ACAAACTGCTCAGACAAGATCATTAAAAA-----------ACCCTCTAATATTTTTGAAACT-GAAAATGGCAGTTTGTGGGTTTTATATGAATTCTATACCAGTT--GACGTTATACTGGTGAACTGGAAACTGGGGGTTTGGAAATGA a score=52860.0 s hg17.chr17_random 2579207 174 + 2618010 Caatcatagc-----------------------------------taacatttattgacaccttactatgtgtcataattaacttttataagttaattat----------gtgtagattgactcttctagatctcacaataactttctggaaaaatgtcca-attattatgtccattttacagacgaagaaactgaggccctt---ctaagtggtga-----------aaagag s panTro1.chr19 42847685 173 - 82489036 Caatcatagc-----------------------------------tagcatttattgacaccttactatgtgtcataattaacttttataagttaattat----------gtatagattgactcttctagatctcacaataactttctggaaaaatgtcca-attattatgtccattttacagacgaagaaactgaggcCCTT---CTAAGTGGAG------------AAAGAG s mm5.chr11 22437015 185 - 121648857 TAACAATAGC-----------------------------------TGGCAATTATGGATACCTTAGCGTGGGTCA----TCAATTTTATAGATTTATTGT----------GTGTGTACTAACTCTTCCCTGTCTCACAATAACCCTCTGGGAAAGGGTACACAATATTACACCCATTTTGCAGAGGAAGAAGCTGAGACATTTAAACCTAATGGAAAGAGGGGATGGGAAAATG s rn3.chr10 22232728 213 - 110733352 TAACAATAGCTGGCAAGTGTGGATACCTTAGCTGGTAACAATAGTTGGCAATTATGGATACCTGAGCGTGTGTCA----TTAATTTTATAGATTTACTGTGTGTGTAGTAGTGTGTAGTAACTCTTCCCTGTCTCACAATAATCCTCTGGGAAAGGGTACA-AA-ATTACACCTGTTTTGCAGACAAAT-AGCTGAAACATTTGGACCTAATAG--------------AAAGAG s canFam1.chr9 14373820 150 + 53642819 taa------------------------------------------tagcatttattgagaccttcctatgtgcca---aggactttcataagtgctttat----------atgaacatcaactcatatc--tctcacaataactctctaggaaag-gtaaa-attattatacaccttttgtggatgcagagactg--------------aatgatga-----------aaagag a score=3087.0 s hg17.chr17_random 2579381 7 + 2618010 attcagc s panTro1.chr19 42847858 7 - 82489036 ATTCAGC s mm5.chr11 22437200 7 - 121648857 ACTCAGC s rn3.chr10 22233054 7 - 110733352 ATGTGGC s canFam1.chr9 14373970 7 + 53642819 agTCAAC a score=2908.0 s hg17.chr17_random 2579388 20 + 2618010 ccaggcaatctgaa----------tcaaaa s panTro1.chr19 42847865 20 - 82489036 CCAGGCAATCTGAA----------TCAAAA s mm5.chr11 22437308 30 - 121648857 ACAGGCACACTTAAATGTAAATTTTTAAAA s rn3.chr10 22233063 21 - 110733352 ACAGACACACATAAAT--------GTAAA- s canFam1.chr9 14373977 20 + 53642819 CTAAGCAATCTGAA----------TCTAAA a score=-2297.0 s hg17.chr17_random 2579408 21 + 2618010 tctcac-------------------------------------------acttttacccactGC s mm5.chr11 22437338 64 - 121648857 TCTTTCTTAAACAGAAGTAATGAGAAGAGACCTAACCAAGAGAATCTGAACTTTTACCCAGTGT s rn3.chr10 22233084 13 - 110733352 ---------------------------------------------------TTTTAAAAATCTT s canFam1.chr9 14373997 21 + 53642819 TCCCAC-------------------------------------------ACTTTTACTCACTTC a score=-213.0 s hg17.chr17_random 2579429 5 + 2618010 TCCAA s mm5.chr11 22437402 5 - 121648857 GCCAA s rn3.chr10 22233097 5 - 110733352 TCTTA s canFam1.chr9 14374018 2 + 53642819 TC--- s fr1.chrUn 240922422 5 - 349519338 TCCAA a score=-22221.0 s hg17.chr17_random 2579434 38 + 2618010 AAAACAGAAGTAGAATGCCAT----------TGGATGTCAAATGGA----------TT s mm5.chr11 22437407 47 - 121648857 AAATCA-AAGTGCAATGCTTTTTTCATCACATTAACATCACAGACA----------CA s rn3.chr10 22233102 11 - 110733352 AA--CAGAAGTAA--------------------------------------------- s canFam1.chr9 14374020 39 + 53642819 ----CAGAAATTGGATGCTCTT---------GGGATGTCAAGGTGAATTC------TT s galGal2.chr27_random 521457 48 + 721164 AGAGCAGAGGGGGTCAGGCAT----------GGGGTGCAGAGCCGTCTGCAATTAGGG s fr1.chrUn 240922427 35 - 349519338 --GGCAGAAGAGACTACAGATA---------AGTGTTTAAATGGGA------------ a score=3895.0 s hg17.chr17_random 2579472 30 + 2618010 TTTCCCCACCATTCTGTGACATTCTTTACA s mm5.chr11 22437454 30 - 121648857 CACACACAGAGCACTCTGACATTCTTCACT s rn3.chr10 22233113 23 - 110733352 -------ACCCCACTCTGACATTCCTTACT s canFam1.chr9 14374059 30 + 53642819 CTTCCCCACCACTCTGTGACTTTCTTTACT s galGal2.chr27_random 521505 28 + 721164 CTGTCGCTCCTGTGTGTATCATGCATT--T a score=2345.0 s hg17.chr17_random 2579502 2 + 2618010 CC s mm5.chr11 22437484 2 - 121648857 CC s rn3.chr10 22233136 2 - 110733352 CC s canFam1.chr9 14374089 2 + 53642819 CC s galGal2.chr27_random 521533 2 + 721164 CC s danRer1.chrNA 376794936 2 + 390413307 CT a score=-603.0 s hg17.chr17_random 2579504 5 + 2618010 A-TCCC s mm5.chr11 22437486 6 - 121648857 ATTTCC s rn3.chr10 22233138 6 - 110733352 ATTTCC s canFam1.chr9 14374091 6 + 53642819 ATTTCC s galGal2.chr27_random 521535 6 + 721164 TTTTCC s fr1.chrUn 77130806 5 - 349519338 ATTTC- s danRer1.chrNA 376794938 5 + 390413307 ATTGT- a score=91.0 s hg17.chr17_random 2579509 1 + 2618010 A s danRer1.chrNA 376794943 1 + 390413307 A a score=-96.0 s hg17.chr17_random 2579509 1 + 2618010 A s mm5.chr11 22437492 1 - 121648857 A s rn3.chr10 22233144 1 - 110733352 A s canFam1.chr9 14374097 1 + 53642819 T a score=91.0 s hg17.chr17_random 2579509 1 + 2618010 A s fr1.chrUn 77130811 1 - 349519338 A a score=1133.0 s hg17.chr17_random 2579510 4 + 2618010 CTTT s mm5.chr11 22437493 4 - 121648857 CCCA s rn3.chr10 22233145 4 - 110733352 TTCT s canFam1.chr9 14374098 4 + 53642819 CTTT s fr1.chrUn 253379972 4 + 349519338 CGTT s danRer1.chrNA 376794944 4 + 390413307 CCTT a score=31435.0 s hg17.chr17_random 2579514 48 + 2618010 CAGGAAGTCAACTTGCTTCGTGAACAGCTTGGCGACCGCCTCAGTGTG s mm5.chr11 22437497 48 - 121648857 CAGGAGGTCAACCTGCTTCGTGAGCAGCTTGGCGATCGGCTCAGCGTG s rn3.chr10 22233149 48 - 110733352 CAGGAGGTCAACTTGCTTCGTGAGCAGCTTGGAGATCGACTCAATGTG s canFam1.chr9 14374102 48 + 53642819 CAGGAGGTTGACTTGCTTCGTGGACAGTTGGGTGACCGACTCAGTGTA s galGal2.chr27_random 591483 48 + 721164 CAGGAAATGAGTGCCCTGGGAGGACAGGTAGCCGGCCAAGTCAGTGTG s fr1.chrUn 253379976 48 + 349519338 TAGGAGCTGGCAGCGCTGCGCTCTCAGCTTACTGGCACTATCAACGTG s danRer1.chrNA 376794948 48 + 390413307 CAGGAACTCTTGGCAGTGCGTGCCCAGATGACCGGACAAGTCAACGTA a score=265173.0 s hg17.chr17_random 2579562 330 + 2618010 GAGCTGGACACTGCCCCCACCCTTGACCTCAACAGGGTCCTGGATGAGATGCGCTGTCAGTGTGAAACGGTGCTTGCCAACAATCGCAGAGAAGCTGAAGAATGGTTGGCTGTTCAGG---------------------------TCAGTACCC--A------------------GATTGAAAAA--ATGTCA-------------------------------------GGCTTACAGACTTCT-------------------------------GCCTTTTTTGAATTCTCTAATGGTGTCTGTGTTTCAGACAGAAGAGCTGAATCA-GCAGCAACTGTCCAGCGCGGAGCAGCTGCAGGGCTGCCAGATGGAGATCTTGGAACTGAAACGCACAGCCAGTGCTCTGGAAATTGAGCTCCAAGCACAGCAAAGCCTGGTGCGTGA s panTro1.chr19 42847985 330 - 82489036 GAGCTGGACACTGCCCCCACCCTTGACCTCAACAGGGTCCTGGATTAGATGCGCTGTCAGTATGAAACGGTGCTTGCCAACAATCGCAGAGAAGCTGAAGAATGGTTGGCTGTTCAGG---------------------------TCAGTACCC--A------------------GATTGAAAAA--ATGTCA-------------------------------------GGCTTACAGACTTCT-------------------------------GCCTTTTTTGAATTCTCTAATGGTGTCTGTGTTTCAGACAGAAGAGCTGAATCA-GCAGCAACTGTCCAGCGCGGAGCAGCTGCAGGGCTGCCAGACGGAGATCTTGGAACTGAAACGCACAGCCAGTGCTCTGGAAATTGAGCTCCAAGCACAGCAAAGCCTGGTGCGTGA s mm5.chr11 22437545 326 - 121648857 GAGCTGGACACTGCCCCCACTGTGGACCTCAACAAGGTCCTGGATGAGATGCGATGTCAATACGAGAGGGTGCTGGCCAACAACCGCAGGGATGCAGAGGAGTGGTTCGCTGCTCAGG---------------------------TCAGTGCCC------------------------TCGGTAA--AGGACT-------------------------------------GGCTTCCGGGAGGGT-------------------------------GCCCTGCCTGAGCTCTCTAATGGGGCCTTTGTTTCAGACAGAAGAGCTGAACCA-GCAGCAGAAGTCCAGCGCGGAGCAGTTGGAGGGCTGCCAGACTGAGATGTTGGAGTTGAAGCGCAAGGCCAACACTCTGGAAATTGAGCTCCAGGCGCAGCAAACCCTGGTGCGTGG s rn3.chr10 22233197 326 - 110733352 GAGCTGGACACTGCCCCCACTGTGGACCTCAACAAGGTCCTGGATGAGATGCGGTGTCAATATGAGAGGGTGCTGGCCAACAACCGCAGGGATGCGGAGGAGTGGTTCGCTGCTCAGG---------------------------TCAGTGCCC------------------------TTGGGAA--AGGGAA-------------------------------------GACTTCGGGGAGGAT-------------------------------GCCTTGCCTGAGCTCTCTAACAGGGCCTTTGTTTCAGACAGAAGAGCTGAACCA-GCAGCAGATGTCCAGTGCAGAGCAGCTGCAGGGCTGCCAGACTGAGATGCTGGAGTTGAAGCGTACAGCCAACACTCTGGAAATTGAGCTCCAGGCACAGCAAACCCTGGTGCGTGG s canFam1.chr9 14374150 330 + 53642819 GAGCTGGACACTGCCCCCACCATCGACCTCAACAGGGTCCTGGAAGAGATGCGTTGTCAGTATGAAACCGTGCTGGCCAACAACCGTAGAGACGTGGAAGAATGGTTTGCTGTTCAGG---------------------------TCAGTACCC--A------------------GAGCAAGAAA--ATGACA-------------------------------------AGCTTCCAGACTTCT-------------------------------GCCTTATTTGCATCCTCTAATCATACCTGGTTTACAGACAGAGGAGCTGAATCA-GCAGCAGCTGTGCAGCGCAGAGCAGCTGCAAGACTGCCAGACAGAGATCCTGGAACTGAAACGCACAGCCAATGCTCTGGAAATTGAGCTCCAAGCACAGCAAAGCCTGGTATGTAA s galGal2.chr27_random 591531 401 + 721164 GAAGTGGACTCTGCTCCAGGCATTGACCTGTCCAAGATCCTGGCCGATATGAGAGACCAGTATGAACACATGGCGGAGAAGAACAGGAAGGATGCTGAGGCCTGGTTCCACAGTAAGGT-------------------------ATCAAAAGCTTCA------------------TACTAAATAA--ATGCTGATTCTTAAATCCACAAAGGAAACAAAGTGAC-TCTGTAACTTACAGAAAACCAACCCCAAAGCCTCACAACCTCTGCTCAGAGGCCCTATGGGTCTCATGTGGGGTTTTCCCTTTTTCAGACTGAGGAGCTGAACCGTGAGGTAGCCGT-CAATACCGAACAGCTACAGAGCAGCAAGTCTGAAGTCACTGACCTGAGACGCACCCTCCAAGGGCTGGAGATAGAGCTGCAGTCCCAGCTCAGCATGGTATGTTA s fr1.chrUn 253380024 372 + 349519338 GAGGTGGACGCCAAACCCCAGCAAGACCTCAACAGAGTCCTGGACGAGATCCGCCTGCAATACGAAACCATCTGCGACAAACAGCGCCGTGAGCAGGAGGCCTGGTTTACTGAGAAGGTAGAAGAATTTCCCATAGCTAAAACCATCACTCTCC--ACACTTCGATGGCTCAAATTACTGAGAAACTATGACA-------------------------------------ATCAAGGGGGACACC-------------------------------TTCACACCTGCGATCTTTGCA-----TTTCTTCTCAGTCGGCAAACCTGAACAA-AGAGGTGGTCGAAAGCACAGAAATCATCCAGACGACCAAGACAGAGATCTCGGACCTGCGGCGCACACTCCAGGGCCTGGAGATCGAACTGCAGTCTCAGCTCAGCATGGTGAGAAA s danRer1.chrNA 376794996 333 + 390413307 GAGGTCGACGCAGCACCACAGGAAGACCTGACAAAGATCATGGCTGAAATCCGTGAACACTACGAATCAGTTGCTGCCAAGAACCGCAAAGATCTTGAGGCTTGGTTCCAGGCCAAGG---------------------------TAAAATGCT--G--------------ATATTTTTAAAGAA--AGCACA--------------------------GTGATGTTTCAAACCAAGAAAA-----------------------------------GACTTACCTGACTGTTTTA--------CCTTTCACAGACCGAAACCCTCACCAAGGAAGTTGCTGT-GAGCACAGAAACCCTTCAAATATCCCGCTCTGAAATCACAGAGGTTAAGCGCACACTCCAGAGTCTTGAAATCGAACTTCAGTCACAACTCAGCATGGTAAGTGA a score=-390.0 s hg17.chr17_random 2579892 4 + 2618010 GGCA s danRer1.chrNA 376795329 1 + 390413307 G--- a score=-1306.0 s hg17.chr17_random 2579892 3 + 2618010 --GGC s panTro1.chr19 42848315 3 - 82489036 --GGC s mm5.chr11 22437871 3 - 121648857 --GAT s rn3.chr10 22233523 3 - 110733352 --GAT s canFam1.chr9 14374480 3 + 53642819 --GGG s fr1.chrUn 253380396 3 + 349519338 CAG-- a score=700.0 s hg17.chr17_random 2579895 1 + 2618010 A s panTro1.chr19 42848318 1 - 82489036 A s mm5.chr11 22437874 1 - 121648857 G s rn3.chr10 22233526 1 - 110733352 G s canFam1.chr9 14374483 1 + 53642819 A s galGal2.chr27_random 631560 1 + 721164 A s fr1.chrUn 253380399 1 + 349519338 A a score=385.0 s hg17.chr17_random 2579896 2 + 2618010 -AA s panTro1.chr19 42848319 2 - 82489036 -AA s mm5.chr11 22437875 2 - 121648857 -AA s rn3.chr10 22233527 2 - 110733352 -AA s canFam1.chr9 14374484 2 + 53642819 -AA s galGal2.chr27_random 631561 2 + 721164 -GA s fr1.chrUn 253380400 2 + 349519338 -AA s danRer1.chrNA 376795330 2 + 390413307 CA- a score=4851.0 s hg17.chr17_random 2579898 19 + 2618010 GGCAGTGTCCG-TTGTGTCA s panTro1.chr19 42848321 19 - 82489036 GGCAGTGTCCG-TTGTGTCA s mm5.chr11 22437877 18 - 121648857 --CAGTGCCAGCCTTTGTCA s rn3.chr10 22233529 18 - 110733352 --CAGTGCTAACCTTTGTCA s canFam1.chr9 14374486 19 + 53642819 GACAGCTCTGT-TTTTGTCA s galGal2.chr27_random 631563 17 + 721164 --CAGAGAACC-TTCTCCAA s danRer1.chrNA 376795332 19 + 390413307 AGCAGAGAGCA-TTCTTCCA a score=-151.0 s hg17.chr17_random 2579917 126 + 2618010 CTGATAAGTCAGGCCCTGAGATGTTAAGCCCTCTTCCATA-------------------------------------------------------------------------TCCGAGGATC------------------------------ACATTTCCTTGCCTTTCCCGAGTACTGCCGTTTACCCAGCTATTAAT--AGAAGCAGAAGTGACAGGTCCACAG--CTTG s panTro1.chr19 42848340 126 - 82489036 CTGATAAGTCAGGCCCTGAGATGTTAAGCCCTCTTCCATA-------------------------------------------------------------------------TCCGAGGATC------------------------------ACATTTCCTTGCCTTTCCCAAGTACTGCCGTTTACCCAGCTATTAAT--AGAAGCAGAAGTGACAGGTCCACAG--CTTG s mm5.chr11 22437895 163 - 121648857 GCAGCA-------TCCAGAGATGCTATGCTCTTTGACAGAAGTCCAG----------------------------------------GGAGATGCTCACAGTTCAGCAGCAGGTCTGGGTATCCAA-------TTAGC--------CTAGCTGGCATTTCCCTCCCTTTCTTCACATATGTTACTTGTCCA-----CAGT--AGAAACAGAA-TGACAGATCAACGGGCTTTG s rn3.chr10 22233547 139 - 110733352 GCAGCA------TCCCAGAGATGCTATGCTCTTTGACAGAAG-----------------------------------------------------------------------TCCAGGGAGACACTCACAGTTCAGCCAATTAACCTAGCTGGCTTTTCCCTGTCTTTCTTCACAAACATTACTTACCCA-----TATT--GGAAGAA----TGACAGACCAACAG------ s canFam1.chr9 14374505 171 + 53642819 CTGAAGAATTAAGCCCTGAGATGCTAGTCCCTCTTCCATGAACCCAAGGAGAGATCCACAGTTCATGTGGCAGAAAGTCTGAATTTCCAATA---------------------TGCAAGGATT------------------------------GTA-TTCTTTGACTTACCCAAATACTGCTGTTTACTGA------GCT--AGAAGCAGAAGTGATAGGTCAACAG--TCTG s galGal2.chr27_random 631580 116 + 721164 CTTACCAGATC--TTTTTAGACCTTATACTTTTCTACAGGA------------------------------------------------------------------------TTGAAGGTTT------------------------------GCATTT------ATTTCCTAATAAATCCTGCATTCTTT-----CGGTTCTTAAATAGCAGTCATATATATACAA--CTGG a score=63723.0 s hg17.chr17_random 2580043 270 + 2618010 TCCTCT-------AAGATGCCTTACCTTCACTCCTGGGCTTGAGTCTG--ATGCTGCAGCAGCCTCCAGAGACAGGGAGGG-----------AGAAGCAGAGCTGGAGAGAAACCTCCGGGCCATGGTCGCTTAAGCATTCTGGCAGGTTTTAATTCTCATTTGATTCA--GGCCAGTTTTCCAGGCTCACTGTTATATCTAAAACAAAGAATCA--TTTTCAAAC------------ATTTCAT-----------CCTACAGTTTCCCAGGAT----CTACACTTCAACCTTATCCTTCACTGCACCACCCCCCACTCAA s panTro1.chr19 42848466 270 - 82489036 TCCTCT-------AAGATGCCTTACCTTCACTCCTGGGCTTGAGTCTG--ATGCTGCGGCAGCCTTCAGAGACAGGGAGGG-----------AGAAGCAGAGCTGGAGAGAAACCTCTGGGCCATGGTCGCTTAAGCATTCCGGCAGGTTTTAATTCTCATTTGATTCA--GGCCAGTTTTCCAGGCTCACTGTTATATCTAAAACAAAGAATCA--TTTTCAAAC------------ATTTCAT-----------CCTACAGTTTCCCAGGGT----CTACACTTCAACCTTATCCTTCACTGCACCACCCCCCACTCAA s mm5.chr11 22438058 288 - 121648857 TCCTCTC---ACCAGGGTGCCTCCCTGGCCCTCCTAAGCCTAAGCATG-TCTCCAATACCATCAGCTAGAGACAAGAAAAGTCT-------CAGAA-CACAGTGGGACAGGGAGAGCTGAGCCAAAGGCCCTTAAGCTTAGCAACAGATTTTCCTT-TCCTCTAATCGA-TGAACAGTTTTACAGATTCACCGTAGTGTCTAAAACAAAAAAACA----AACAAACAAACAAAAAAAAACCACAT-----------C---AAGTTTCAAGTGGTCATACAACAGCTAAGACCCGCACATCACCATAGCCCTCCCCACCCA- s rn3.chr10 22233686 265 - 110733352 -CCTTT---------GTGGTCTCACTGGTCCCCCTAAGCCTGAGCATGCCCCCCAGTAACATCCACGAGAGACAAGAAAAGTCT-------CAGAA-CACAGTGGGACAGGGAGAGGTGAGCCAAAGGCCCTTAAGCTTAACAATGGATTTTCATT-TCCTTTAGTTTGATGAACATTTTTCCAGTTTCACCGTAGTGTCTAAAACAAACAAAAAACACATCAAGTTTCCAG------TGTTCAT-----------ACTACAGTT----AAGAT----CTGCACATCA---CCACACTTC---------TTCCCCACCCAC s canFam1.chr9 14374676 293 + 53642819 TACTGTCCCAACAGGATTCCCTGACCTTCCCTCCTGGGCTTGAGCATG--ATCCTGCAGCACCTTCCAGAGACAGAAAAAGAACAGGAGGGCAGGAGCAGAATGAGAGTGGAACCTCTGAGCTGAAGGCACTGAAGCATTCCAGTGGGTTTTAATTGTGCTTTGATTTG--GGCCAACTTCTCAAACTCAGCATCATAT------AAAAGAATAA--TATTCAAAC------------TTTGCATTCTTCCACTACCCTAAGCTTTTCCAGGAT----CCACACCTCAACTGGACCCTTCACTCCACCCCATTTCACCCAG a score=47645.0 s hg17.chr17_random 2580313 151 + 2618010 GCAACAGGAACACCATGCGTTCAAGATGACATGAACCAGTTCTGGTCAAGCACCACTGTG-----TGCATGTCATTAGGCCCTGCGGAGAACACCTAGAAGAACAATAGCTGAGCATTCATCCTGTGAGAGGCACTATGctgatttaaggctcaca s panTro1.chr19 42848736 151 - 82489036 GCAACAGGAACACCATGCATTCAAGATGACATGAACCAGTTCTGGTCAAGCACCACTGTG-----TGCATGTCATTAGGCCCTGCGGAGAACACCTAGAAGAACGATAGCTGAGCATTCATCCTGTGAGAGGCACTATGctcatttaaggctcaca s mm5.chr11 22438346 141 - 121648857 --CACAAGAACACCATGCAGTGAAAGTCACGTATACCAGGTCCCATCAGGCACTGTGGTACCAGTTGAGCTTCAT------CCAAGGAGTTTACCTAGATGAACGTCACCTGAGCATCCA-CCTAGGAGAGGCATGGTGC-AATCTATGGC----- s rn3.chr10 22233951 146 - 110733352 GCAACAAGAGCACCATGCAGTGAAAGTCACATATACCAGGTCC-ATC-GGCAGCGCAGTATGTGTTGGACCACAT------CCAAGGAGTATACCTAGATGAACCTCACCTGAGCATTCA-TGTAGGAGAGGCATGGTGT-AATCTATGGCAGACA s canFam1.chr9 14375094 142 + 53642819 TTAAAAAGGATACCATGCATTGAAGATCACATTAGCCAGTTCCAGTCAGACACCACTGTC-----TGTGCCACATTGGGGCCTATAGAGACTATCTGGGTGAATAATAGCTACATATTTATCTTGTGAGAGGCTTAA---------ACGcctcata a score=13917.0 s hg17.chr17_random 2580464 98 + 2618010 gtaactttaccggatagatacctt---tatcccatg-acacagataaggaaaactgagactcagattaagtaacttgcaaag---gatgcaatt-----------------------------------ctaagaggcaa s panTro1.chr19 42848887 98 - 82489036 gtaactttaccggatagatacctt---tatcccatg-acacagataaggagaactgagactcagattaagtaacttgcaaag---gatgcaatt-----------------------------------ctaagaggcaa s mm5.chr11 22438487 90 - 121648857 ---------------AGACACCTTCACTAGCCCGGGTGAACAGGTGGGGGAAAGCTAGGGTCAAAGGAAGAAAGTTCCAGAATGTGCTGCAGTT-----------------------------------CTCAGTAGAAA s canFam1.chr9 14375236 134 + 53642819 ataacttgatgggataaatccttttactaaacccat-tatcagatgaggaagactgagactcagattaagta----gcaggg-gtcatgcagttgttttttttttttttttttttttttcatgcagttgttaagaggcaa a score=6024.0 s hg17.chr17_random 2580562 30 + 2618010 acttggaagctgagttcagccagttgaatc s panTro1.chr19 42848985 30 - 82489036 acttggaagctgagttcagccagttgaatc s canFam1.chr9 14375370 30 + 53642819 aagtggaagctggatccagctggttcaatc a score=32085.0 s hg17.chr17_random 2580592 354 + 2618010 ccagagtctcttctctCTCTCTTTTTAAAtttatttttattgatatataatatgcgtaaattttttttacgtagatgtgatattttgttacatgcatagaatgtgtaatgatcaagtcaggatatttagagcatccatcacctcaagtatttatcatttctatgtgttgggagcatttcaagtcctcccatctagctattttgaaatgcacagtgtattgttgttaactgtagtcacacttctctgctgtccaacatgaaaacatattctttctgtctaactgtatgtttgcacccattaaccaacctctcttcatccccttaccacacatatgccagtcccagcctctggtat s panTro1.chr19 42849015 354 - 82489036 ccagagtctcttctctCTCTCTCTTTAAAtttatttttattgatatataatatgcgtaaattttttttacgtagatgtgatattttgttacatgcatagaatgtgtaatgatcaagtcaggatatttagagcatgcatcacctcaagtatttatcatttctatgtgttgggagcatttcaagtcctctcatctagctattttgaaatgcacagtgtattgttgttaactgtagtcacccttctctgctgtccaacatgaaaacgtattccttctgtctaactgtatgtttgcacccattaaccaacctctcttcatccccttaccacacatatgcccatcccagcctctggtat a score=5142.0 s hg17.chr17_random 2580946 25 + 2618010 cCAGAGCCTCTTCTCTTAATAGCAC s panTro1.chr19 42849369 25 - 82489036 ccaGAGCCTCTTCTCTTAACAGCAC s canFam1.chr9 14375400 25 + 53642819 ccagagcctcttctctgaaccattc a score=4016.0 s hg17.chr17_random 2580971 18 + 2618010 TATACTACCCCTCCCTGC s panTro1.chr19 42849394 18 - 82489036 TATACTACCCACCCCCGC s mm5.chr11 22438612 18 - 121648857 TGTACCAACACTCACTGC s canFam1.chr9 14375425 18 + 53642819 tataTGGCTCTTTCCTGC a score=44488.0 s hg17.chr17_random 2580989 164 + 2618010 CAAGA-GCCCAAACTCAA-TCTTTCCTCTCATATGTTGTGGATAGTCCTTAAGCTTCAC-AAATATGTCATGTATTGCTGTAGTCATAGTGGTGGTAGTGATAGTTGACACGT--AGAACAGTGGCAgtatggct-ggcactgttctaaatgctttacgcacattaactc s panTro1.chr19 42849412 164 - 82489036 CAAGA-GCCCAAACTCAA-TCTTTCCTCTCATATGTTGTGGATAGTCCTTAAGCTTCAC-AAATATGTCATGTATTGCTATAGTCATAGTGGTGGTagtgatagttgacacgt--agaacagtgacagtatggct-ggcactgttctaaatgctttacgcacattaactc s mm5.chr11 22438630 163 - 121648857 GCAGATGCTCAGACTCAAGGGTTTCTTCACAAATGATGACAACCCTCCTTGAGCTACCCAAAAAAAGTTCTGGCTGACAATTGTTCTAATGATAGAAGCGAC-----ACATTT--AAAGGCCTTGAGTTGCTTCTAGGCACTGTTCCAAATTCTCCCCAAGTATCAGCTC s rn3.chr10 22234236 161 - 110733352 CAAAT-GCTCAGACTCAAGAGTTTCTTCCCAAGTGGTGACAACCCTCCTTGAGCTACCC-AAAAGAGTCCTGGGTGACAAATGTTATAACGATAGAGGTGAC-----ACATTT--AAAGGCCTTCAGTTGCTTCCAGGCACTGTTCCAAATGCTTCCCATATGTCAGCTC s canFam1.chr9 14375443 158 + 53642819 CCCAA-GTCCATACTCAA-CTTCTCCCCTCAAATGCTGTTGATCTTCCTTA---------ATATATATTACAGGTTGTGATGGGCA-AGTGGTGATAGTAATAACTAACCCTTGCACAGTTTTGAAATTTTTTccaggcactgttcacagtgttttacacatattaattc a score=-123.0 s hg17.chr17_random 2581153 1 + 2618010 t s canFam1.chr9 14375601 1 + 53642819 a a score=25461.0 s hg17.chr17_random 2581153 285 + 2618010 tttttttttttttttggacggagtctccctctgtcgcccaggctggagtgcaatggcatgatcttgacttactgcaagctttgcctcccgggttcacaccattctcctgagtagctgggactacaggcgtccaccaccgtacccagctaattttttatatttttagtagagacggggtttcaccgtgttagccaggatggtctcgatcttctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcctgagccaccgcgcccagcccgc s panTro1.chr19 42849576 283 - 82489036 ttttttttttttt--ggacggagtctcgctctgtcgcccaggctggagtgcaatggcatgatcttgactcactgcaagctttgcctcccgggttcacaccattctcctgagtagctgggactataggcgcccaccaccatacccagctaattttttatatttttagtagagatggggtttcaccatgttagccaggatggtctcgatcttctgaccttgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagcccgc a score=847.0 s hg17.chr17_random 2581438 7 + 2618010 atattaa s panTro1.chr19 42849859 7 - 82489036 atattaa s mm5.chr11 22438793 7 - 121648857 ATCTCAC a score=597.0 s hg17.chr17_random 2581445 3 + 2618010 ctc s panTro1.chr19 42849866 3 - 82489036 ctc s mm5.chr11 22438800 3 - 121648857 CTC s rn3.chr10 22234397 2 - 110733352 -CT a score=58536.0 s hg17.chr17_random 2581448 192 + 2618010 ttaatcttcacaaccgtctaatgaaacagatactttgtattctccactatacagagaataaaactgagactcacagaagctaaataatttgcca-gtggtcacatagctagaaaagggtaag-caggaatttgaaagtaggcactctggcccgagagactgcacttcat--ggtcctttggacaatgtt----tcctccc s panTro1.chr19 42849869 192 - 82489036 ttaatcttcacaaccgtctaatgaaatagatactttgtattctccactatacagagaataaaactgagactcacagaagctaaataatttgcga-gtggtcacatagctagaaaagggtaag-caggaatttgaaagtaggcactctggcccgagagAATGCACTTCAT--GGTCCTTTGGACAATGTT----TCCTCCC s mm5.chr11 22438803 156 - 121648857 CCCAGCCTC-------CCCCATGACATAGGTACTTTGCATTCTCCATTGACTCTAGAATAAAAC--AGGCTCAGAGAAGCTAAGTAACTGGCCCTGAGGTCTCTGAGCTAGAAAGGGGTACA----------------------------TCGAGGGTCTG----TCATAGGGTCCTTCTGAGAAGGTTC---TACTCTT s rn3.chr10 22234399 170 - 110733352 CTCACCTTCCCAGCTCCCCCATGACATAGGTACTCTGCATTCTCCATTGACTGCAGAATAAAAC--ACACTCAGAGAAGTTAAGTAACTCACCCTAAGGTCTTGGAGCTAGAAAGGGGGGGA----GGGTTCA-----------------TCAAGAGTCTG----TCATAGAGTCCTTCTGAGAAGGTCT---TCCTCTT s canFam1.chr9 14375603 195 + 53642819 tcaatccgcacaaccatcctatgaaataagtactttgcattggtcattttttataaaataaaac--agcctcagagaagctaagtaattttccc-aaagtcacatagatgcactagggtagatcaaggatttgaaaaccagcactctggccccaaggactatgctacac--agcccttctgAATATACTCTTTTTCTTCT a score=1314.0 s hg17.chr17_random 2581640 1 + 2618010 G s panTro1.chr19 42850061 1 - 82489036 G s mm5.chr11 22438959 1 - 121648857 G s rn3.chr10 22234569 1 - 110733352 G s canFam1.chr9 14375798 1 + 53642819 G s galGal2.chr27_random 592024 1 + 721164 G s fr1.chrUn 253380560 1 + 349519338 A a score=317407.0 s hg17.chr17_random 2581641 229 + 2618010 CAGACAGAATCTCTGGAATGCACCGTGGCAGAAACCGAGGCCCAGTACAGCTCCCAGCTGGCCCAAATTCAGTGTCTGATCGATAACCTGGAGAACCAGCTGGCCGAGATCCGCTGCGACCTGGAGCGACAGAACCAGGAGTACCAGGTGCTCCTGGACGTGAAGGCCCGGCTGGAGGGTGAGATCAACACGTACTGGGGCCTGCTGGACAGCGAGGACAGCAGGCAAG s panTro1.chr19 42850062 229 - 82489036 CAGACAGAATCTCTGGAATGCACCGTGGCAGAAACCGAGGCCCAGTACAGCTCCCAGCTGGCCCAGATTCAGTGCCTGATCGATAACCTGGAGAACCAGCTGGCCGAGATCCGCTGCGACCTGGAGCGACAGAACCAGGAGTACCAGGTGCTCCTGGACGTGAAGGCCCGGCTGGAGGGTGAGATCAACACGTACCGGGGCCTGCTGGACAGCGAGGACAGCAGGCAAG s mm5.chr11 22438960 229 - 121648857 CAGACGGAGTCTCTGGAGTGTACTGTGGCAGAAACCGAGGCCCAGTACAGCACACAACTGGCCCAAATGCAGTGCCTAATTGACAGTGTGGAGCACCAGCTGGCTGAGATCCGCTGTGACCTGGAGCGTCAGAACCAGGAGTACCAGGTGCTGCTGGACACCAAGGCCCGGCTGGAGTGTGAGATCAACACGTACAGGGGCCTGCTGGAGAAGGAGGACAGCAGGCAAG s rn3.chr10 22234570 229 - 110733352 CAGACAGAGTCTCTGGAGTGTACTGTGGCAGAAACTGAAGCCCAGTACAGCACACAACTGGCCCAAATGCAGTGCCTAATTGATAGTGTGGAGCACCAGCTGGCTGAGATCCGCTGTGACCTGGAGCGTCAGAACCAGGAGTACAAGGTGCTACTGGACACCAAGGCCCGGCTGGAGTGTGAGATCAACACATACAGGGGCCTGCTGGAGAAAGAGGACAGCAGGCAAG s canFam1.chr9 14375799 229 + 53642819 CAGACAGAGTCTCTGGAATGCACTGTGGCAGAGACGGAGGCCCAGTATAGCACCCAGCTGGCCCAGATGCAGTGCCTGATTGATAACGTGGAGAACCAGCTGGCTGAGATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTATGAGGTGCTGCTGGACACAAAGGCTCTGCTGGAGGGTGAGATCAACACATACCGAGGTCTCCTTGAGAGTGAAGACAGCAGGCAAG s galGal2.chr27_random 592025 229 + 721164 CAGAAAGGCGCGCTGGAGAGCACCCTGGCAGACACCGAAGGGCGTTACGGCGCACAGCTGGCGCAGATCCAGGACATGATTGGCAGCATTGAGGCGCAGCTGGCTGAGCTCCGCGCTGATATGGAGCGCCAGAACAGCGAATACAAGATGCTCATGGATATCAAGACCCGTCTGGAGCAGGAGATCGCTACTTACCGGCAGCTCCTGGAGGGTCAGGAGTCCCAGTAAG s fr1.chrUn 253380561 229 + 349519338 CAGAAAGGGGCGCTGGAGAACACGCTAGGTGAAACGGAGGCACGCTACAGCGCCATGCTCTCCGGCTACCAGAACACCATCAACATGCTGGAGGGAGAACTGGCCAACGTGCGCGCCAGCATCGAGCAGCAGGGTCAGGACTACAAGATGCTGCTGGACATCAAGAGCAGGCTGGAGCAGGAGATCGCCATCTACAGGGGCCTTTTGGAGACAGAGGAGTCCAGGTACC s danRer1.chrNA 376795429 229 + 390413307 CAGAAAGCGTCATTGGAAGGTACTCTGGCAGACACACAGGCCCGCTATGCTGCCATGCTATCTGGCTACCAGTTCCAGGTGAGCAGCCTGGAAGAGCAGCTGGTGCAGCTTCGTGGTGACCTTGAGCGTCAAAGCCAGGAATACAAGATGCTTCTGGACATCAAGACCAGACTGGAGATGGAGATTGCAGAGTACAGAAGACTGCTGGATGGAGAGGCTACAAGGTGAG a score=1911.0 s hg17.chr17_random 2581870 1 + 2618010 T s panTro1.chr19 42850291 1 - 82489036 T s mm5.chr11 22439189 1 - 121648857 T s rn3.chr10 22234799 1 - 110733352 T s canFam1.chr9 14376028 1 + 53642819 T s galGal2.chr27_random 592254 1 + 721164 T s fr1.chrUn 253380790 1 + 349519338 T a score=-123.0 s hg17.chr17_random 2581870 1 + 2618010 T s danRer1.chrNA 32115480 1 - 390413307 A a score=-4234.0 s hg17.chr17_random 2581871 66 + 2618010 TCCACAG-----------------TTACTCATGAAATCCCCC--AGAGTCACAAA-GAGGCTGATGTAAAA-------GAATCCTGTTTCCCC s panTro1.chr19 42850292 66 - 82489036 TCCACAG-----------------TTACTCATGAAATCCCCC--AGAGTCACAAA-GAGGCTGATGTAAAA-------GAATCCTGTTTCCCC s mm5.chr11 22439190 43 - 121648857 TACACAG-----------------------------ACCCCC--AGAGTCCC------------CCCAGGA-------GAACCCTGTTTCCTC s rn3.chr10 22234800 42 - 110733352 TACACAG-----------------------------TTCCCC--AGAATCCC------------CACA-GA-------GAACCCTGTTTCCTC s canFam1.chr9 14376029 67 + 53642819 TCCACAC------G---------ATTATTCTCAAAATCCCCC--A-AGTCACAAA-GAAGCTCATGCAAGA-------GAATCTTGCCTCCTC s fr1.chrUn 253380791 70 + 349519338 -------------GATACCTGT-ATTTGACATAAAATCCTCCTAACAGATAAAAG-GATGCAGATGTT-CA-------CATCCTTTCTTTCTC s danRer1.chrNA 32115481 89 - 390413307 --CACAACTACGGAAAACCTTTAGCTAAACATGTAAACATTG--ATGATAAAAAATGAATATAATGTAACATGCTTCCTATTTCTATTTCTCC a score=18734.0 s hg17.chr17_random 2581937 57 + 2618010 AAAGTCTGGACAAGTTC-----AGACCTCCCCAGTGTGTTTAGGGATCTTC----TTAAAAAAGTG s panTro1.chr19 42850358 57 - 82489036 AAAGTCTGGACAAGTTC-----AGACCTCCCCAGTGTGTTTAGGGATCTTC----TTAAAAGAGTG s mm5.chr11 22439233 53 - 121648857 AAGGCCTGACTAAGGCC-----AATTC-------CATGTTTCGGGGTCTTCCTT-TTCAAACAGTG s rn3.chr10 22234842 58 - 110733352 AAGGCCTGACCAAGGCC-----AATTC--CATAATATGTTTAGGGGTCTTCCTT-TTTGAACAGTG s canFam1.chr9 14376096 57 + 53642819 AAGGTCTGCCCAAGGTG-----AAACCTCCCTCATGTGTTAAATGATCTCC----TTacaagagta s danRer1.chrNA 32115570 66 - 390413307 AGTGTATCCACAAGCTCAAGCAAAACCTCCACCACACGCAAAGTAGTAACCATTGTGGAAGAGGTG a score=822.0 s hg17.chr17_random 2581994 8 + 2618010 -----CTGAAAAG s panTro1.chr19 42850415 8 - 82489036 -----CTGAAAAG s mm5.chr11 22439286 8 - 121648857 -----AAAGAAAG s rn3.chr10 22235427 8 - 110733352 -----CTGCACAG s canFam1.chr9 14376183 6 + 53642819 -------aaaaaa s danRer1.chrNA 32115636 13 - 390413307 GTGGATGGAAAAG a score=13982.0 s hg17.chr17_random 2582002 134 + 2618010 ----TGGCT--------GAGGTTAAGAACATGACACTAGAGATATTTTTAAAATATTCTAAAG-------GCAGATTAATT----ATTA-GTGTAACATT-------TCATGCT-GGCATCTC----CCTTTGTTCCTGTTTTCCACTAAAGGAAAATCAGGAATAGGCC s panTro1.chr19 42850423 134 - 82489036 ----TGGCT--------GAGGTTAAGAACATGACACTAGAGATATTTTAAAAATATTCTAAAG-------GCAGATTAATT----ATTA-GTGTAACATC-------TCATGCT-GGCATCTC----CCTTTGTTCCTGTTTTCCACTAAAGGAAAATCAGGAATAGGCC s rn3.chr10 22235460 106 - 110733352 ----TAGCT--------GAGGCTAAGTCTATGAT-----AAATGTTCTAAAATCGCCTCAAAT-------TCTGAATTAGA----ATGG-TTTTCATAGA-------TCATA----------------------------TTTCCACACGAGGGAAATAGGGAGCATACG s canFam1.chr9 14376191 142 + 53642819 ----caGCT--------GAGGCTAATCACATGACAGTAGAAGTATTC-AAAAGTATTCCAAAGTTCTAAAGCAGAATAAGT----ATCACATACAAAATT-------TCATGCTGGGCGTCCC----CCTTTGTTCCTGACTTCCACCAAAGAGAAATCAGGAACATGCA s danRer1.chrNA 32115649 153 - 390413307 TGGTCAGCTCATCCTCCAAGGCCACAAGCCAGAC--TAAAACCACTTAAAAGAAATCTTCA---------GCAAAAGAGTTCTCAATCA-GTGTGATAATAAAGTCAATAAACT-GGTCTCACTGTATTTTTGTGCTTGTCTTGTTTT----GGAATTCATGCATCATTT a score=0.0 s hg17.chr17_random 2582136 4 + 2618010 TAAG a score=726.0 s hg17.chr17_random 2582136 2 + 2618010 TA s panTro1.chr19 42850557 2 - 82489036 TA s rn3.chr10 22235566 2 - 110733352 TG s canFam1.chr9 14376333 2 + 53642819 TA a score=1910.0 s hg17.chr17_random 2582138 2 + 2618010 AG s panTro1.chr19 42850559 2 - 82489036 AG s mm5.chr11 22439902 2 - 121648857 AG s rn3.chr10 22235568 2 - 110733352 AG s canFam1.chr9 14376335 2 + 53642819 AG a score=12581.0 s hg17.chr17_random 2582140 22 + 2618010 ATAACATTTGCAAAATCAAGAA s panTro1.chr19 42850561 22 - 82489036 ATAACATTTGCAAAATCAAGAA s mm5.chr11 22439904 22 - 121648857 ATAACATTTCACAAGCTAAAAA s rn3.chr10 22235570 22 - 110733352 ATAACATTTCACAAGCTAAAGC s canFam1.chr9 14376337 22 + 53642819 ATGACATTTGCAAAGTGAAATA s danRer1.chrNA 32115802 22 - 390413307 ATATCATGTATAATAGCAAAAA a score=383034.0 s hg17.chr17_random 2582162 1041 + 2618010 AAAATATAAAAT--ACTATTCAACTGCCACTGCTACAGTGAACA--TGAAGT------------GGCAATTCTGGGTGCAGAGAAGAAACAGGCTTCAGTCAA-TGCTATTGTGCAGAGTTTTTTTCAGAACATAATTTGTAGGGCAAATTTTGACACGG-TTTTTCTGAGTTGCCATTTTATCAACA-TTCCCTTGTTAATCTTGGTTGAAAATCGATTTTTCCCCAGGCTTTCCTGTAGCCCATGTTC--GACCACATGCACC----------------------TCGAGCAACACTTGTGAGCCATGCTCAGCCTATGTCATCTGCACTGTTGAAAACTGCTGCTTGTGAATGTTAAG-------GACAGCAGGTAGAGGAATCAAAGCCAGCAGCATCCTAGAAAGGAGATGGGGCTTCAACCAGG-GACATCCAAACCGGAAGCACAAATC---------------CAGGA----------------------------------------GGCTC--TCATATCCTGGAATTGCCCTCCAGG-------TATCCTCAGTCTT--TCTGCTTTACTATTTCCTCTCCTTCCGGCTTATTTGTGGTATACTGGAAGCCCATAAAGCATTCTTGCTCATCTCCAAATAAAACGTGTTTTATTCCTTTAGCGTGGTAAATATAGCTCTATGGCTGATTACTGTTGATAGAATATTCATTTTATGGCAAGGAAATCATCTAAACCCATAACCATAGTTTCAATGTACATAAACCCAGGCTGAAAATATTTTTTAACTCCTCAAATACAAATAAATTAATGAACCCATGAGAAATGTCATATATCTTAGAAAATAGTTGTGTGTATCTTTCTGAGGAAAAATATTAGGAATAAAATATGATAAAATGTAttt----tttgattataaaagtactagattc--tctt-tttttaaatttggctcattaaaagggaaaaggtcacttatgatttcatcttccaaacagccatagtcaatattttggggtactttcttccagttttctttcttataatagatttttccacacagctataatcatactaacatatgcacacacttgtgtaaac--tttctttcatttatgtcatctaagcatttttaattctaataaaaacataagattgt s panTro1.chr19 42850583 1041 - 82489036 AAAATATAAAAT--ACTATTCAACTGCCACTGCTACAGTGAACA--TGAAGT------------GGCAATTCTGGGTACAGAGAAGAAACAGGCTTCAGTCAA-TGCTATTGTGCAGAGTTTTTTTCAGAACATAATTTGTAGGGCAAATTTTGACACGG-TTTTTCTGAGTTGCCATTTTATCAAGA-TTCCCTTGTTAAGCTTGGCTGAAAATCGATTTTTCCCCAGGCTTTCCTGTAGCCCATGTTC--GACCACATGCACC----------------------TCGAGCAACACTTGTGAGCCATGCTCAGCCTATGTCATCTGCACTGTTGAAAACTGCTGTTTGTGAATGTTAAG-------GACAGCAGGTAGAGGAATCAAAGCCAGCAGCATCCTAGAAAGGAGATGGGGCTTCAACCAGG-GACATCCAAACCGGAAGCACAAATC---------------CAGGA----------------------------------------GGCTC--TCATATCCTGGAATTGCCCTCCAGG-------TATCCTCAGTCTT--TCTGCTTTACTATTTCCTCTCCTTCCAGCTTATTTGTGGTATACTGGAAGCCCATAAAGCATTCTTGCTCATCTCCAAATAAAACGTGTTTTATTCCTTTAGCATGGTAAATATAGCTCTATGGCTGATTACTGTTGATAGAATATTCATTTTATGGCAAGGAAATCATCTAAACCCATAACCATAGTTTCAATGTACATAAACCCAGGCTGAAAATATTTTTTAACTCCTCAAATACAAATAAATTAATGAACCCATGAGAAATGTCATATATCTTAGAAAATAGTTGTGTGTATATTTCTGAGGAAAAATATTAGGAATAAAATAGGATAAAATGTAttt----tttgattataaaagcactagattc--tctt-tttttaaatttggctcattaaaagggaaaaggtcacttatgatttcatcttccaaacagccatagtcaatattttggggtactttcttccagttttctttcttacgatagatttttccacacatctataatcatactaacatatgcacacacttgtgtaatt--tttctttcatttatgtcatctaagcatttttaattctaataaaaacataagattgt s mm5.chr11 22439926 1061 - 121648857 GAAAGA--------GTTGTGCAGCAATGTCTGCTGCAGTGAAC---TGAAGCAGCCATGGGCGGGGCTGTTCTGGGGCCAAAGATGGAACGGGCTAGAGTCAA--------ATGCAAAG-CCTCCGCTGAGGACAATTGGGAAGGCAGTCTCTAA------TGTTTCTGAGATGACTTGCTACCAGCA-TTCTCTTACTAAACTTAGTTTGAATTGG--TTTCCCCCAGACTCCCCTGCAATCCAGGCTCCGGAGCACCCATGCCGAACAGCACATGTGAGCCGTGTTCAAACAGCATGTGTGAGCCGTGTTCAGCCTATGTGATTTGCACAGTTGAAAACTGCTGTGCATGACAATTAAATC-----TCCAGCACGC---TGGATGAAAATCAAAACTGCTCAAGAAAGAAGTCCAGACCTGATCCTGGCTACACCCAACCTTGAGACACAGATCTGTCCC----GGAGTCAGGACCTCAAACATGCTCCACCCAGTGCAGAAACAGATCTACTGGGATT--TCAGATCCTGAAAATCTGCACTAAG-------CATCCCGGGTCTG-------TTGATCATAGCTTCTGCCTTAAGCTTGCTTTTGGTATTCTAGAAGCCCATGAAGCCTTCTTGCTAATCTCCAAATAAAACTTGTTTCACTTCTTTAGGGTGGTAAATACAGTTTAGTGGTCAATGGCCTTGGCTATAATAGGCATTTAACAGAAGAGAAGTTGTCTAAACCCAGGACTGTAGTTTCAATTTGCCTAACACCAGTCTGAAAATATCTTT--ACTCCT------CAAACAGATTAAATAATCCATGAGAAATGTTGCATATATAAAATGATGGATGACTGCATCTTTCTCAG-----------------AAATAAATTAACATGTATTTTATGTTTAATTCTCGATGAATAAGGTTC--TCCTATTTTTAACATTTGCATATTAAGGGGAAATA-------TACAGTTCCGGCCCACAAATGGC------CAATATTTAGAAGGGA---CTTCTAATTTTCATTCTTATAATTGG-TTTTCTACATAGGGATAATTATACTTAACAATTTATACAGTTTCATA-----TTCTTTTCACTTATGTTACCAAAGCACTTTAATCCCAACTTAAAAGAAAACATTTT s rn3.chr10 22235592 1010 - 110733352 GGA-----------GTTGTACCGCAATGCCTGCTGCAGTAAAC---TGAAGCAGCCATGGACCGGGCTGCTCTGGCACCAAAGATAGAACAGGCTAGAGTCAA--------ATGCAAAG-TCTCTACTGAGGACAATTCGTAAGGCAG--TTTAA------TGTTTCTGAGATGACGGGCTACCAGCA-TTCCCTTACTAAACTTACTTTGAATTGG--TTTTCCCCAGACTCCCCTGCAATCCAGGCTC--CACAGCCTCCATA----------------------TCAAACAGCGCATGTGAGCCGTGTTCAGCCTACGTGATTTGCACGGTTGAAAACTGCTGTGCATGACAATTAAATC-----CCCAGCACGG---TGGATGGAAATGAAAACTGCTCAAGAAGGAAATCGAGACCTCACCCAGGCTACACCCAAGCTGGAAACGCAGATCTGTCCCTGGGGGAGTCGGGACCTCAACCA-------------------------------GGCTCCGCCCAATGCAGAAACGGATCTACCGGGACTCCAGATCCTGGGTCTG-------TTGATCATGGTTTCTGCCTTAAGCTTGCTTTTGGTATTCTGGAAGCCCATAAAGCCTTCTTGCTAATCTCCAAATAAAACTTGTCTCGCTGCTTTAGGGTGGTAAATACAGTTTAGTGGCCAATTGCCTTGGCTCTAATGACCATTTAACAA-AGAGGAATTGTCTAGACCCATGACTGTAGTTTGGATTTGCTTAA-CCCAGTCTGAAATTACCTCT--ACTCCT------CAAACAGATTTAATAGTCCACGAGAAATGTTGCGTATCTAAAACGGTGGATGTATGTATCTTTCTCAG-----------------AAATAAAATAGCATGGATTTTATTTTTAATTCTAAGTGAACAAGGTTC--TCCTGTTTTTAACTTTTGCATATTAAAGGAAAACA-------TACAGTTGCAACCCAAAAATAGC------CAATATTTAGGAGAGA---CTTCTAGTTTTCATTCTTATAATTGG-TTTTCTACAGAGAGATAATTATACTCAACAATTTATACAGTTGCA-------TTTTTTTCACTTGTGTTACCTAGGCACTTTAATCCCAACTTAAAAGAAAATATTTT s canFam1.chr9 14376359 1019 + 53642819 AATACACAAAACTGTGTATTCAACTGGCACAGGGGCAGTGAGCATTCCTAGT------------GGCAATGCTGAATCTAGGCCTGAAATAGGCTTAGGTCAAATGCTACTCTGCAAAG-AGTGTTCAGAACATCATTTGCAGGGCAAATTTTGGCACGATCTTTTCTGAGTTGAAATTTTACCTGGATTTCCCTTGTTAAGCTTACTTCAAA------ATTTCCACAGGCTTCCTTGTAACCCGTGTTC--TACAATAAGCACA----------------------TCAAGCAACACTTGTGAGGCATGCTCAGCGTATCTGATTTGCACGGTCGAAAACTACTGTGCATGAATGTTCAACCCTCGGCGCAGTGGATAGAGGAGTCAAAGCCAGCAGTGTCCTGGAAAGGAGATGGGACTTCAATCAGA-TGCATCCAAATCTAA-----AAGTC---------------AAGAA----------------------------------------GGGGT--TTCTACCCTAAATTTGTCCTCTAAA-------CATCCCCATTATATTTCTGCTTTGTCATTTCCTCTCCTGCCTGCTTATTAGTGATATTCTAGGAGTCTATAAAGCTTTCTTGCTAATCTCCAAATAAAATATGTTTCATTCCTTTAGCATGGTAAATATAGCTTTGTGGCTTATAACTGTGGATATAAGAACCATGTGATGC------------CTAAACCCATGTCGATAGTTTGATTTTGCACAAACCGAGGCTGAAAATAGTTTTTAACTCCTCAAATACAAA-AGTTTAACTAATCCATGCAAAATGTCATACATCTTGGAAGACAGTTGTATGTATCTTTCTAAGAGGAAATTTAA------GAATAAA--------TGTCTTATTTGTAATTATAAAAGTACAGGATTCCATTTT-TTTCTCAATTTGGCACATGAAAGGGGAaaaaattagttacaattcca-cccccaaacacccgttatcagtattttgggag-----cttccagctttctttcatataataggtttttccacataatggaaatcatatttacatatgcacatagttgagtaaactacttttttcac-tatgtcatgtaagcattttcaatccaaataaacctataagattgt a score=26838.0 s hg17.chr17_random 2583203 321 + 2618010 attgtagccatcactttttttattttttattttttttttgagacagagtcttgctgtgtcacccaggctggagtgtagtcacactatctgggctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggtgtctgccaccacaccaggctaa-tttttttttttttttagtagagacagggtttcaccgtgttagccaggatggtctcaatctcttgaccttgtgatccaccagcttcagcctcccaaagtgctgggattacaggtgtgagccactgcacccagcc s panTro1.chr19 42851624 311 - 82489036 attgtagccatcact-------tttttttttttttttttgagacagagtctcgctgtgtcacccaggctggagtgcagt----ctatctgggctcactgcaacctccacctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggtgtgtgccgccacaccaggctaattttttttttttttttagtagagacagggtttcaccgtgttagccaggatgatctcaatctcttgaccttgtgatccaccagcttcagcctcccaaagtgctgggattacaggtgtgagccactgcacccagcc a score=27932.0 s hg17.chr17_random 2583524 93 + 2618010 tgtagccatcattttactggttgca-----taatgtaccataaggtacattgatctgttattggacatttaggttatAAGAATAATTATTCTCATATA s panTro1.chr19 42851935 93 - 82489036 tgtagccatcattttactggttgca-----taatgtaccataaggtacattgatctgttattggacatttaggttatAAGAATAATTATTCTCATATA s mm5.chr11 22440988 80 - 121648857 TGTACTCAACATTTTAGCAGTTGCATTATTTAATCTATCATAAAGT------------------ATACCTAGGTTATAAAAATAATTACTCTCACATA s canFam1.chr9 14377380 92 + 53642819 tgtgactgttattttagtggctaca-----taaaataccataaggt-tattggcctgttattggacatttggggtatAAGAATAATTATTCATACACA a score=18816.0 s hg17.chr17_random 2583617 100 + 2618010 TTTAaaaaacaaggtagagaact-----tccagaa---------tgatgtatatttccatattcctcctccta----------aaaaccctggaaattacatatcaaataaacataagaggact s panTro1.chr19 42852028 100 - 82489036 TTTAaaaaacaaggtagagaact-----tccagaa---------tgatgtatatttccatattcctcctccta----------aaaaccctggaaattacatatcaaataaatataagaggact s canFam1.chr9 14377472 124 + 53642819 Tttaaaaagcaaagtggagaactccacctccaaaaaaatgaaatggatgtacatttcctcattcctcttcctaagtctggctgaaaaccagggaaattacatataaaagaaatataagcagatt a score=41916.0 s hg17.chr17_random 2583717 212 + 2618010 ctgaaaggtagaagaagaagccaaaccacctaaagatgttgagactccaggagtgacactgtggtgagctccctggattagctttttatctcatatatcccagagggggagctggagaaaccaacaac-cagaaacaccaacaggtgcagaca----aaacaaacaaacaaacaaaca-------gaaagagcttg----ctctgcttaaagaaccagaaaagaggca s panTro1.chr19 42852128 216 - 82489036 ctgaaaggtagaagaagaagccaaaccacctaaagatgttgagactccaggagtgacactgtggtgagctccctggattagctttttatctcatatattccagacggggagctggagaaaccaactac-cagaaacaccaacaggtgcagacaaaacaaacaaacaaacaaacaaaca-------gaaagagcttg----ctctgcttaaagaaccagaaaagaggca s rn3.chr10 22238030 208 - 110733352 CTAAAAGGTGGAGGAAGC--CCAGAGCTGCTGGAGAT-TAGCGTCTCAATGAATGACATTGTGGTGGGATTCTTGGGATC-CTTTTCTCCTCTTATATCCCAAAGCAGGAACTGAAGAGATCAATATC---------CCTGTAGGATCAAAAA----GCACAAAC---CAGAAAAATATGTCTTGGGGAAAACTTAGTCTCTCTAGATAAAGAACCAGAAAGGGGACC s canFam1.chr9 14377596 190 + 53642819 ctgaaaggtggaagaag---ccaaaccaactagaatcat----attcaaggaacagca----agcgagttccttgggttttcttttggcctcatatatcccatgttgggagctgaagaaaccaacaacccataaataccagcaggggcagaca----gaaaaaCAAAATCTCCAAgag-------gagag----------------tcaagggacttgaagagaggta a score=97539.0 s hg17.chr17_random 2583929 816 + 2618010 gcctagaaaggcggaaaacctttagacaataaccactcaactcagccaaacaccacag----aaaatatcatttcacc---cacccatatccacacaaggaaaggccaggtggggagtccagacttctatccttcccaggctgtaataaggcactcaaacttcaccactggggtggaatcagggaaggctaagt-gagagatccaggactttcattcctactatgagacatggaagcactccctgtcccaccatcatggtatcagtggagaccacacgggaagcctggacttaactctacaggctgcagtgaggctcttcttttctcctctggggttagtgtcacaagagtcctactggacagtcagaactctttccctcctccagcagtaccaaggccacccccatgcagtgtcagtggaagctgcatgggagcaataacaagatattcctgcccctcctggccagggtggtatcagcagaggccaggtaaggagtctaaaatcctccctcccagcagtgatgaggggggctctccccttgggtgtcaataggggcaaagtggagagaacctgtatttctactcccacctggtaggaatgaagcagtgtcccccttcccctgccaaaacagtgtcagaggagacctgctagaacataagattaaacagtatcctgaatctcataacataatgccccaatgtccaggtttcaatcaacaattgctctttataccaaggatcataaaatc-tcaacttacaggaaaaaagatgatcaacaaattc--aaacatcaagaggaaaaagacgttagaattaactgacaagg s panTro1.chr19 42852344 811 - 82489036 gcctagaaaggcggaaaacctttagacactaaccactcaactcagccaaacaccacag----aaaatatcatttcacc---cacccatatccacacaaggaaaggccaggtggggagtccagacttctatccttcccaggctgtaataaggcactcaaacttcaccactggggtgaaatcagggaaggctaagt-gagagatccaggactttcattcctactatgagacatggaagcactccctgccccaccatcatggtgtcagtggagaccacacgggaagcctggacttaactctacaggctgcagtgaggctcttcttttctcctc-----ttagtgtcacaagagtcctactggacagtcagaactctttccctcctccagcagtaccaaggccacccccatgcagtgtcagtggaagctgcatgggagcaataacaagatattcctgcccctcctggccagggtggtatcagcagaggccacgtaaggagtctaaaatcctccctcccagcagtgataaggggggccctccccttgggtgtcaataggggcaaagtggagagaacctgtatttctactcccacctggtaggaatgaagcagtgtcccccttcccctaccaaaacagtgtcagaggaggtctgctagaacataagattaaatagtatcctgaatctcataacataatgccccaatgcccaggtttcaatcaacaattcctctttataccaaggatcataaaatc-tcaacttacatgaaaaaagatgatcaacaaattc--aaacatcaagaggaaaaagatgttagaattaactgacaagg s rn3.chr10 22238238 683 - 110733352 ACCTAGAAAGACAGAAAACCTTTAGACACTAGCCACTCAACCCAAGCAAACGCCATAGGAATAAAAGAGCATTTTGTCTGTCACC-----------------AGGCCAACCAGTA---CAAGTCTTCCCATCTTCCCAGGACATAA-AGGCCACCCAA--CTCCCCACTGGGGTCAAGTCAGAGAAGGCTGAGGAGGGGGACCCAGGACTTTCATTTCTACTAGGTAATACTGAAACCTCCCC----------CTAAGG---CAGTGAAGACT--------------------ATTCTA------GCTGTGAGAA-ATTCTCTTCAGCT------TTGGTATCCAAGGAAGCCTA-GAGATA----------------------AACAATAGCAAAGGCACACA--------------GAAAAC--------AGTATTAACAAGATACT----ATCCTTCTAGCCA----------AGTAATGCCCGGAGAAGGAGTC-AAATCTCAGCCTTCCAATACT--TAGGAAAAGACCTCCTTTCAAGTGTTAAAACAGG--AAGTG--GAGAAGCTGGGCCTCCTCTCCTCTTTGAC-GTAATGAGATAGCATCTCCCTTCCCTTCACAAAG-AATGTCAG-GGAGCCCTGTTTGAA-GCAGATTGAAACGACAGCAAAAGTCTCAGAATATAATATCCCAGTGTTCCAGTGTCTATCAGAATTCACTTGTCCTTTCAGAAGCCAGAAAAGCAACAAGGCAAATGAAACTGTGCAAACAACAGATTCCAAGACGCCCCGGGG-----GACGCTACAATAACCTGGAGAGG a score=17302.0 s hg17.chr17_random 2584745 184 + 2618010 gtttttaactttttatttgttatttttctgggtacatagatgtatatatttatggggtacatgagatgatttgacacaggcatgcaatgtgtaataatcacatggagaatggggtgtccatcccctcaagcatgtatctttggtgttacaaacatccagttacactattttacttattgacaat s panTro1.chr19 42853155 184 - 82489036 gtttttaactttttatttgttatttttctgggtacatagatgtatatatttatggggtacatgagatgatttgacacaggcatgcaatgtgtaataatcacatggagaatggggtgtccatcccctcaagcatgtatctttggtgttacaaacatccagttacactattttacttattgacaat a score=38026.0 s hg17.chr17_random 2584929 300 + 2618010 gatttttaaatagtcatcataaaaatgcttcagtaagcaatgcttcaataaactcttacaacaaatgcaaaa-atagagaagactcaat------gaagaagatg---gaaagactccagtggaaatttcagaactgaaacataccatagaacc---aaaatagaaacctcaatggagatgggcttaacagcagaat--gcaggccagagaggaaaacatcagggaatttgatgatacaata-atagacatcatccgacctgaaaaac-ggaaaaaaaatagtgttaaaaagatagag--tctcagggaattttggggc s panTro1.chr19 42853339 304 - 82489036 gatttttaaacagtcatcataaaaatgcttcagtaagcaatgcttcaataaactctcacaacaaatgcaaaa-atagagaagactcaat---gaagaagaagatg---gaaggactccagtggaaatttcagaacggaaacataccgtagaacc---aaaatagaaacctcaatggagatgggcttaacagcagaat--gcaggccagagaggaaaacatcagggaatttgatgatacaata-atagacatcatccgacctgaaaaacagaaaaaaaaatagtgttaaaaagatagag--tctcagggaattttagggc s rn3.chr10 22238921 315 - 110733352 GATTCCAAAGAAGTTGTCATAGAAAAGCTTCCCTGA-CTGTTATGTGATCAGCTACTTCAATAAATGAGAAACACAGGAAACACTAGGTAAAAAAAAAAAAGATGGCAGGAAGAGCCCAGGAAAATTTTCAGAACTGAAAAAAATTCCACAAACAAAAAAATGTGACTCTCAGTG--GATAGACTCAGTCACAGACCTGGCATGCTGAAGAGAGAAAGATCAGTAAATCTGATCATGGGGCAGAAAAATGTCACCCAGACTGAACGAC-AAACAGAAAATAATACAGAAGCCCTGGAGCATTCTGGGGAACTTTGGGAC a score=555.0 s hg17.chr17_random 2585229 6 + 2618010 tatatc s panTro1.chr19 42853643 6 - 82489036 tatatc a score=25161.0 s hg17.chr17_random 2585235 193 + 2618010 aaacgatctaacattcatgtcagtggagttctgtaagggaggaga--aaaagtga--agccaaaaacatttgaaggaataaacactgaaaatttacaaatatggcaaaagacaaaaacctacagattccagaaaccaagcaaaccccaaaaatgataaaccctaa----gaaatctacaccaggaaatat-------catattcaaac s panTro1.chr19 42853649 193 - 82489036 aaatgatctaacattcatgtcagcggagttctgtaagggaggata--aaaagtga--agccaaaaacatttgaaggaataaacactgaaaatttacaaatatggcaaaagacaaaaacctacagattccagaaaccaagcaaaccccaaaaatgataaaccctaa----gaaatctacaccaggaaatat-------catattcaaac s rn3.chr10 22239661 191 - 110733352 GGACCACCTAAGCTTCATATC--------------ATGGAGGAGATTGAAGGTGCTTGGCCAAATGTATTTCTAGAAATAAAAATTACAATTTTCCACATCTTGCAAAGATC--AAACTGATAGATTCAAGAAGACAAGCCAACATCCAAAAGGATACATTTAGAAATCAAAATCCACA-CAGGATATGTGTGTGTACATATACAAAC a score=49487.0 s hg17.chr17_random 2585428 604 + 2618010 ttttgaaagctaaagacaaaaaaaattatgaaagcagtgagagagaaatgacaccttaccaatagaagaaaacaatttaattgatggcaggtatgtcaccataaaccatggaagccaatatgaagtaatacaatagttttcaaatgctaaaag--aaaaaaaAAAACTGTCggccaggcgtggtgactcacacctgtaatcccagcactttgggaggccaaggaggatggattacaaggtcaagagatcgagaccatcctggccaacatggtgaaaccccatctctactgaaaatacaaaaatttgctgggtgcggtggcgggcacctgtaatcccagctactcgggagactgaggcaggagaattgcttgaacccgggaggcggaggttgcagtgagcagagatcgtgccactgcactccagcctgggtgacagagcaagacaaaaaagaaa----aaggaaggaagggagggagagagggagggagggaaggaAAGgaaagagaaacaaagagagagagagaaagaaagaaagagaaagaagagaagagaaggaaggaaggaaagaaag-----aaggaaaaagaaaagagaaaagaaaagaagaaaagaaag s panTro1.chr19 42853842 597 - 82489036 ttttgaaagctaaagac-aaaaaaattatgaaagcagtgagagagaaatgacaccttaccaatagaagaaaacaatttaattgatggcaggtatgtcaccataaaccatggaagccaatatgaagtagtacaatagttttcaaatgctaaaagaaaaaaaAAAAAACTGTCagccaggcgtggtgactcacacctgtaatcccagcactttgggaggccaaggaggacggattacaaggtcaagagatcgagaccatcctggccaacatggtgaaaccccatctctactaaaaatacaaaaattagctgggcacggtggcgggcacctgtaatcccagctactcgggagactgaggcaggagaattgcttgaacctgggaggcggaggttgcagtgagcaaagatcgtgccactgcactccagcctgggtgacagagcaagacaaaaaagaaaaaggaaggaaggaagggagggagagagggagggagggaaggaaaggaaagagaa--agagagagagagagaaagaaagaaag------------aaagaaagaaagaaagaaagaaagccaaaaagg---aagaaaagaaaagagaagagaaggaaggaaag a score=138801.0 s hg17.chr17_random 2586049 1535 + 2618010 aacgaaggaaggag-ggagggagggaggaagggaaggaaggaaggaaaagaagaaggaaaggaaggaaggaatgaaggaagggagggagggaaggaaggaaggaaaagaagaaggaaaggaaggaaggaagaaagaaagaaagaaagaaagagagaaagaaactgtcaacccagatttatataccctttgaaaatatcgttcagaaaaccaaagagaaatcaagacattctcagatgaaggaaacttaaaagatgtggccagcaaaccaacctaaaacaatgactaaagaaaattccctaaacacaaacaaaactataaaataaggaaacttggaagatcagacaggaaaaaatataataaaaaattaatatatgattaatttaaataaatttctttctcctcctgagttttctaaattatgtttcatggttgaggcaagaagtataacactgtctgatgtggttctcaatatatgtgtagaaaatatttaagacaattatattaaaatggaggcgagtaaaggaatataaacaaaggcgagttttccacacttcacttaaactgataaaacgttaacactggtagactatggtaagctatgcatacagcatgaaatacccagagcaactatttaaaaagctatgccaataggtatactaaaaaacactatagataaatcaaaatggaactctaaagcatattcaagtaacccacagaaaggcaggaaaaagaatacagagaaacaaacaaaaaacagaatgaacaaacagaatacaataaatacaatacaggctaaatatagaaaattacagcaagtggaaagagtctaaagacatagaaaaaagacagatcttggcagagtggataaaaaagcatgatccaactgtacgatacattctgcaaaaagctaaatataacaatataggtaggttgaaagtaaaaggattgaagaGAtgcacaattgttcatagcagctttgtttgtaatagccaaaaactagagatcacagaaatgtcctAAAGatctcaaggccatcatgccgagtgaaaaagggcaattcaaagggccatatatttgataattctatgtatataacattcttgaaatgacacaattataagaatggagaacaaattagGCATAGGACAAAGGAAAGCTCTGTGGTGATTGAATAGTTCCATATTTTGATTGCACCACCCATGTGAAGAAAACATATATGTggccaggtgcggtggcacacacctctaaccccagcactttgggaggctgaggcaggcagatcatgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctccactaaaaatacaaaaattaaccaggcatagtggtgcacgcatgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtaagctgagatcgcgccactgcactccagcctgggcgacagagtgagactccgtctcaaaaaaaaaaaaaaaaaaGTGCCCACGATTCAGAA s panTro1.chr19 42854743 1522 - 82489036 aatgaaggaaggaatgaaggaagggagggagggaaggaaggaaggaaaagaagaaggaaaggaaggaaggaatgaaggaagggagggagggaaggaaggaaggaaaagaagaaggaaaggaaggaag----aaagaaagaaagagagagagagagaaagaaactgtcaacccagatttatataccctttgaaaat---gttcagaaaaccaaagagaaatcaagacattctcagatgaaggaaacttaaaagatgtggccagcaaaccaacctaaaacaatgactaaagaaaattccctaaacacaaacgaaactataaaataaggaaacttggaagatcagacaggaaaaaatataataaaaaattaatatacgattaatttaaataaatttctttctcttcctgagttttctaaattatgtttcatggttgaggcaagaagtataacactgtctgatgtggttctcaatatatgtgtagaaaatatttaagacaattatattaaaatggaggcgagtaaaggaatataaacaaaggtgagttttccacacttcacttaaactgataaaacgttaaccctggtagactatggtaagctatgcatacagcatgaaatacccagagcaactatttaaaaagctatgccaataggtatactaaaaaacactatagataaatcaaaatggaactctaaagcatattcaagtaacccacagaaaggcaggaaaaagaatacagagaaacaaacaaaaaacagaacgaacaaacagaatacaataaatacaatacaggctaaatatagaaaattacagcaaatggaaagagtctaaagacatagaaaaaagacagatcttggcagagtggataaaaaagcatgatccaactgtacgatacattctgcaaaaagctaaatataacaatataggtaggttgaaagtaaaaggattgaagaGAtgcacaattgttcatagcagctttgtttgtaatagccaaaaactagagatcacagaaatgtcctAAAGatctcaaggccatcatgccgagtgaaaaagggcaattcaaagggccatatatttgataattctatgtatataacgttcttgaaatgacacaattataagaatggagaacaaattagGCATAGGACAAAGGAAAGCTCTGTGGTGATTGAATAGTTCCATATTTTGATTGCACCACCCATGTGAAGAAAACATATATGTggccgggtgcggtggcacacacctctaaccccagcactttgggaggctgaggcaggcagatcacgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattaaccaggcatagtggtgcacgcatgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagagtgagactctgtctcaaaaaaaaaaa-------GTGCCCACGATTCAGAA a score=2245.0 s hg17.chr17_random 2587584 24 + 2618010 ATCtaatatttacaatattagatt-- s panTro1.chr19 42856265 24 - 82489036 ATCtaatatttacaatattagatt-- s mm5.chr11 22451102 25 - 121648857 ATCTAAAGTGTCTATTGTT-GATTGA a score=73564.0 s hg17.chr17_random 2587608 375 + 2618010 taatattttaaatatttaatctatgtaa------atttaatatttaCAATTCATGGATTCCTCACTGGCTCTACAGAGGCAGATAAGGCCTTCCTATCACTCAGCTACTGGTCTCAGGCTGGCCCCAGTGCCCATTCTTCCTATGTTGTGCAC--AACCCCTTTCTCAGAAA-----GACAGGGGCAAAGCTGTCA--AGAGAACTTTCTATCACTTCCAGATTCGATCTTCCAGGC---AGTGTGGACTTGAGTTTTTACAGCTGAGATTCTCCAAAATGACA--CTCAAAAAAAGAAAAGAGAAGAGAGAAGCACT---TCTAGAACAGCTGCCTTCTCAGTGCCTGGGGCAGGGAAGAGACAGCCCAAAGATCTTGAACCAGAAAACAAAGCCTT s panTro1.chr19 42856289 375 - 82489036 taatattttaaatatttaatctatgtaa------atttaatGTTTACAATTCATGGATTCCTCACTGGCTCTACAGAGGCAGATAAGGCCTTCCTATCACTCAGCTACTGGTCTCAGGCTGGCCCCAGTGCCCATTCTTCCTATGTTGTGCAC--AACCCCTTTCTCAGAAA-----GACAGGGGCAAAGCTGTCA--AGAGAACTTTCTATCACTTCCAGATTCGATCTTCCAGAC---AGTGTGGACTTGAGTTTTTACATCTGAGATTCTCCAAAATGACA--CTCAAAAAAAGAAAAGAGAAGAGAGAAGCACT---TCTAGAACAGCTGCCTTCTCAGTGCCTGGGACAGGGAAGAGACAGTCCAAAGATCTTGAACCAGAAAACAAAGCCTT s mm5.chr11 22451127 346 - 121648857 TAATATTTT---TATATAAGACATG---------ATT--GTGTTTACAATTCAAGGAACCCTTACTGGCTCTATAGAAGGAGCTAGACCCTGCCTAGCCCACAGCTATTCACCTCAGACTGGCTGCTAAGCCACCTTCCCCTCTCCTCTGCCCAGAAGGTTCTACCCAGAA--------------CAAAGCTGT---------GCCTGTCGTTTCTCTCAGATTTAATCTTACAGGAGAGAAGTTGAACATACACTTTTACTACTCAGAAATCCCAAAATGGCATGCCCAAACAAAGAGAA-AACGCATAGAAGTCCTGTACTCATAACATACACCACTTCAGCATTC--------------CCTGTCCCAGAATCTTGAGTCAGAAATCAAGGGCTT s rn3.chr10 22247348 370 - 110733352 TATTATTTTATGTATATATTTTTTATTATATTTTATT--GTGTTTACAATTCAAGGAACCCTTACTTGCTCTATAGAAGGAGATAGACCCTGCCTAGCCCTCAGCTACTCACCACAGACTGGCTGCTAAGCCATCCTTTCC--TGTCCTGCAC--AGCCCCATGCCCAGAAGCCTCTGCCCAGAACAAAGTTGTGAGCATAATGCCTGTCA----TTTCAGATCTACTCTTACAGGGGAGAAGTTGAATGTACACCTTTGCTCCTCAGAAATCGCAAAATGACATGACCAAAAGAAGAGAA-----------AGCACC---TCTAAGTCCGGTAC----TTAGAGCATGCAGCACCTCAGATGCATTCCATGTCCCTTGAATCAGAAATCAAAGGCTT a score=6672.0 s hg17.chr17_random 2587983 71 + 2618010 GGTAATACCCTGcctaactgcaaaggggcaagagagggtaagcctcccatgtgcccaaaaggagaggagaa s panTro1.chr19 42856664 71 - 82489036 GATAATACCCTGcctaactgcaaaggggcaagagagggtaagcctcccatgtgcccaaaaggagaggagaa a score=10997.0 s hg17.chr17_random 2588054 81 + 2618010 ccagatatGCGTGAGCCCGAGTCTCTTCCAGAACAGCCTTGAAACACACAGATGAAGAAAGGTAGAGGGAACCCCCACAAT- s panTro1.chr19 42856735 81 - 82489036 ccagatatGCGTGAGCCCGAGTCTCTTTCAGAACAGCCTTGAAACACACAGATGAGGAAAGGTAGAGGGAACCCCCACAAT- s rn3.chr10 88483391 80 + 110733352 CCAGAGATG-ATGAACAC-AGTTTCCTCCAGAGGAGACAAGAGGTACACAGATGAGGGGACATCGGGGAAACTTCTAACAGC a score=6633.0 s hg17.chr17_random 2588135 14 + 2618010 AAATGTGCAGTGGG s panTro1.chr19 42856816 14 - 82489036 AAATGTGCAGTGGG s mm5.chr11 99195105 14 + 121648857 AAAAGTGCAGTGGA s rn3.chr10 88483471 14 + 110733352 AAAAGTGCAGTGGA a score=21880.0 s hg17.chr17_random 2588149 135 + 2618010 -------GGAACAGGGCAGGAAGAGCTTG-------GGGAATAGCAAAGGATGCAGTTGGGCTAGAATGTATAGAGTGGGTCGGGGGTCCTGGAATATGAGATAAAGTCAGCTGGGTCAATATTGTGGAGGGTCTTGGTTGCCAGGCAA s panTro1.chr19 42856830 135 - 82489036 -------GGGACGGGGCAGGAAGAGCTTG-------GGGAATAGCAAAGGATGCAGTTGGGCTAGAATGTATAGAGTGGGTCAGGGGTCCTGGAATATGAGGTAAAGTCAGCTGGGTCAAGATTGTGGAGGGTCTTGGTTGCCAGGCAA s mm5.chr11 99195119 116 + 121648857 -------AGGACTAGGCAGGGAGAGTATA-------GAAGACAGCTGAGGATACAACTTCGGTAGGATG-------------AGGGGTAGTAG-TTACAGGACAAGGTTGTCTAGGGTCAGGCCGTACAA-----TCATTGCTAGGCAA s rn3.chr10 88483669 130 + 110733352 GCAACAGAGAAGTGCACTGGAAGGACTAGGCAGGGAGAGGAAGGCTGAAGATACAGCTTCGGTAGGATG-------------AGGGG-----GTGTTCAGGACAAGGTTGGCTAGGGCCAGGCCATACAG-ACAATCATTGCTAGGCAA a score=5145.0 s hg17.chr17_random 2588284 60 + 2618010 ACAAGAATTTGAGCCTTGCTCTGTCTGTAGGAAG-GTTGAACATTTCTGCACCAGCAATGG s panTro1.chr19 42856965 59 - 82489036 ACAAGAATTTGAGCCTTGCTCTGTCTGTAGGAAG-GTTGAAC-TTTCTGCACCGGCAATGG s mm5.chr11 99195235 52 + 121648857 CTAAGAACCTGAG-CTTGT----TCCATAGGAATCATTAAGTAGTTTTGTA----CACTAA a score=3365.0 s hg17.chr17_random 2588344 41 + 2618010 AGCTATATGAAGGTAGAT----------------------------------------------AAAGAAGATCTCCAAAGTGGAGA s panTro1.chr19 42857024 41 - 82489036 AGCTATATGAAGGTAGAT----------------------------------------------AAAGAAGATCTCCAAAGTGGAGT s mm5.chr11 99195287 87 + 121648857 ACTAATATGCTTGTTGATTAAGATTCCTATAACTTTTATGTTTGTTGACTAGCTCACGAAGGCCAAAGAAGCACGTCAAGGTGGATT s rn3.chr10 88483891 41 + 110733352 GACTATGTCAAGCTGACC----------------------------------------------AAAGAAACACATCAAGATGGGTT a score=58859.0 s hg17.chr17_random 2588385 250 + 2618010 ATGTGGTAAAGTAATTTACAGGC-TAGCCAGATTGACAAAAGTTAACAAATG----ACCTGGTGGTAGAAAAATAAAGACAATAAG---TACCCACTATTCTGTCAAAAGGTTTGGTAATGAAAAGAAGGCAGAAGC-CACCTTCATGGAAGAAGTGCCTCATGGTTACGGGTCAGAC--ATTGTAGGATCAGTTAACAGATGTGCTTATAGGGAAAGAAAAAATGATCCAGTAGTAAAGAAGACATGAAAGAGGCAAGAA s panTro1.chr19 42857065 250 - 82489036 ATGTGGTAAAGTAATTTACAGGC-TAGCAAGATTGACCAAAGTTAACAAATG----ACCTGGTGGTAGAAAAATAAAGACAATAAG---TACCCACTATTCTGTCAAAAGGTCTGGTAATGAAAAGAAGGCAGAAGC-CACCTTCATGGAAGAAGTGCCTCATGGTTACAGGTCAGAC--ATTGTAGGATCAGTTAACAGATGTGCTTATAGGGAAAGAAAAAATGATCCAGTAGTAAAGAAGACATGAAAGAGGCAAGAA s mm5.chr11 99195374 241 + 121648857 ATGTAGAACAGCCAT-----GGCATAGCCAGAATGCTGAAAGTGAACAGAGGCTCTAGCTGGTGAT-GGAAAATGGTGATGACAAA---TCCCCACTGCTCTATCA----------CAACAAAAAGAGGGAGGACAA-TGCCTTCATGGAAGAAGAGCCTCTCGACTACAGGGAAGACAGATTTTATGGATGGGAAACAAACATGCTTACAGGGAAAGGAAAATTGACCACATAGTAAAGGAGACACAGAAGAGGCCAGAA s rn3.chr10 88483932 240 + 110733352 ACATAGAATACCCAC-----GGCATAGCCAGAATGCTGAAAGTGAGCAGATGCTTGGGCTGGTGGTGGGAAAATGGTGGTGACAA----TCCCCACTGTTCTATCA----------CAAAGAAAAGA-GGAGGAGGA-TGCCTTCATGGAAGAAGAGCCTCGCGGCTACAGGGAAGAGGGATTTTATGGATGGGAAACAAACTTGCTTACAGGGAAAGGAAAATTGACCACATGGTAAAGAAGGCACAGAAGAGGCCAGAA s danRer1.chr22 13205978 221 + 32001892 ATTTGATTAACCAAATGAGAAGA-TAGCTTATTCAAGAACAATTAAAAAATT----TACAGCAGTAAGAAAAAAAGAGCCATTAAAGGCTACTGTCTACATCCTCA---------GCAAGTACTAAATGATCTATGATCACCTTTA------GAGTACATTGCTGTTATTGGCTAATA--GCTAT------------------TAATTATTGGTTAATGGCAAACCGATAGCTAGTTAAGAAGATATATGAGATATATAAt a score=26805.0 s hg17.chr17_random 2588635 135 + 2618010 AAGGGGGAGCATAATGGATGAAATGTGGCCCTGAAGAAATCAAAAGGGAATCAGCCAAGGAAGGAACAACTCTGCATGTGAGACACAAGAGGAAAAGAAT------AAAAATTATTAGAAAGGTATGGAGGCAGAAAAAAA s panTro1.chr19 42857315 135 - 82489036 AAGGGGGAGCATAATGGATGAAATGTGGCCCTGAAGAAATCAAAAGGGAATCAGCCAAGGAAGGAACAACTCTGCATGTGAGACACAAGAGGAAAAGAAT------AAAAATTATTAGAAAGGTATGGAGGCAGAAAAAAA s mm5.chr11 99195615 118 + 121648857 GAAGAAG---TTAATGGATGGATTGTGGTTTTGCAGGAATCAAAGGCGAATCAGTT----------CAATAGTACA--------ACACGAGGAAGTGACTCATGGGAGAAATGACTTAAAGG--ACGGAAGCAGAGAGAAA s rn3.chr10 88484172 118 + 110733352 TAAGAAG---TTAATGGATGGATTGTGGTTTTGCAGGAATCAAAGGCGAATCAGTTCAGTAGTACAAAACAAGGAA---GTGACTCATGGG---------------AGAAACAACTTAGAGG--ACAGAAGCAGAGAGAAA a score=0.0 s hg17.chr17_random 2588770 12 + 2618010 GTCTAAGAAACT a score=258.0 s hg17.chr17_random 2588770 7 + 2618010 GTCTAAG s panTro1.chr19 42857450 7 - 82489036 GTCTAAG s mm5.chr11 99195733 7 + 121648857 CACAAAT a score=464.0 s hg17.chr17_random 2588777 5 + 2618010 AAACT s panTro1.chr19 42857457 5 - 82489036 AAACT a score=9679.0 s hg17.chr17_random 2588782 86 + 2618010 AACGAAGCAGAAACAGTTTTGCAGACAATTTTTCTAATGATTCTAAAAGAGATAC-ATTCAATTTGTGGAATTTGTGGAATAAAAAC s panTro1.chr19 42857462 86 - 82489036 AATGAAGCAGAAACAGTTTTGCAGACAATTTTTCTAATGATTCTAAAAGGGATAC-ATTCAATTTGTGGAATTTGTGGAATAAAAAC s rn3.chr10 88484290 71 + 110733352 CATGAATCCCAAAC----TTGC-------CTTCCT--TGGCCCTGAAAGGAATTCAAACCGACTTGAGGAATTTAT---ATAAAAGC a score=63186.0 s hg17.chr17_random 2588868 326 + 2618010 ------AAGAAAATAATATTCATCAGTAACTATAAAATGC-AAAGAATTTCACTGCTAACCTCTTGATTTATTTACTTTCAGTATTTTTCATACATTTTCAAACTAATGGACTATTTCAAACACTGCTattttatgaagtcaaatttatcgtattttttacaggttcttaatttcaagtcactgttacaaaggccttcctcat-ctgaatttgtaaaagtattctcctatattttattttagtacatttatgattttcacttttcacatttgaatctttgatccatttgtaattt------aagtatatagataaagtagTGAACATTCATG----CAGCTGCA s panTro1.chr19 42857548 326 - 82489036 ------AAGAAAATAATATTCATCAATAACTATAAAATGC-AAAGAATTTCACTGCTAACCTCTTGATTTATTTACTTTCAGTATTTTTCATACATTTTCAAACTAATGGACTATTTCAAACACTGCTattttatggagtcaaatttaccgaattttttacaggttcttaatttcaagtcactgttacaaaggccttcctcat-ctgaatttgtgaaagtattctcctatattttcttttagtacatttatgattttcacttttcacatttgaatctttgatccatttgtaattt------aagtatatagataaagtagTGAACATTCATG----CAGCTGCA s mm5.chr11 99196216 284 + 121648857 ------AAAAAGATAGTTATCGTGAAGAGTTACAAATTGCAAAAGAATGGTACCATTAGTACTGTTATATGTCTCCTTCTAGCCTTCTTTATACAGCTATGAGATTAGAAATTGTCTCAAGCATTGT----------AGTGACCCCTATC-AGTATTTTACAGATTCATAATTTTGAGTTGTTGTCACAAAGTTCTTCCACAT----------------------------TCCCTTTTTAGCATGTTTGCGATTT--ACGTTTTATTTTTGAGAGCTTGATCTATTTGGAATTTCTTTGGAATTTGATCTATTTGGAAGT-----TTCTTG--------TGTA s rn3.chr10 88484361 324 + 110733352 ACACTGAAAATGATAATTACCATGGAGACCTACAAATGGCAAAAGAGCGCCACTGTTGGGACTGTCCTATGTCTCCTTCCAGCCTTCTGTGTACAGCTGTGCGATTGGACATGGTCTCAGGCATGCT----------AGTCAAGTTCATC-AGTGTTTTACAGATTCTTAATTTCGAGTTGCTGCTACAAAGTTCTGCCACAGCCTGAAGTTGTAGAACAGATTCTACATGTTCT-TCTCAGCATGCTTGCGATTT--GCATTTGATATTTGAGAGCTCGGTCTATTTGGAATTT------GAATATATAATGAAAGTAGTGAAGGTTTGTGTGGACAGTTGCA a score=23587.0 s hg17.chr17_random 2589194 83 + 2618010 CAGTTGTATCAAATCTTAACTTTTTATGTTAACTCCACTTTattgagatacaattttcagacaataa-gatgcatcaattgaaa s panTro1.chr19 42857874 84 - 82489036 CAGTTGTATCAAATCTTAACTTTTTATGTTAACTCCACTTTattgagatataattttcagacaataaagatgcatcaattgaaa s mm5.chr11 99196500 79 + 121648857 CATTTGTAGCACATCTTAATTTCTAATTTTAACTGTGTTCTCTTAGAGCTCAATTT----ATAATGA-AATACATCCATTGAAA s rn3.chr10 88484791 79 + 110733352 TAGTTGCAGTTCATCTTAATTTGTAATTTTAACTCTGTTCTCTTAGAGTTCATTTT----ACAACAA-AATGCATCAATTGAAA a score=311.0 s hg17.chr17_random 2589277 2 + 2618010 gt s panTro1.chr19 42857958 2 - 82489036 gt s rn3.chr10 88484870 2 + 110733352 AT a score=28836.0 s hg17.chr17_random 2589279 309 + 2618010 gcgcaggtcaggctgggcacagtggctcacgcttgtaatcccagtgctttgggaggccaaggtgggaggatcagttgaggttaggagtttatgccagcctgggcaacataatgaggccccatctctaaaaaaatttttttaaattagccaggcatggtggcatgtgcctgtagtcccagctacttgggaagctgaggtgggaagacaacttgagcccagtaattcaaggcttcagtgagctatgatcatgctactaaactccagcctgggcaatagagtgagaccctgtgtctaaaaataaaaataaaa s panTro1.chr19 42857960 309 - 82489036 gcgcaggtcaggctgggcacagtggctcacgcttgtaatcccagtgctttgggaggccaaggtgggaggatcagttgaggttaggagtttatgccagcctgggcaacataatgaggccccatctctaaaaaaattttttttaattagccaggcatggtggcatgtgcctgtagtcccagctacttgggaagctgaggtgggaagaccacttgagcccagtaattcaaggctgcagtgagctatgatcatgctactaaactccagcctgggcaatagagtgagaccctgtgtctaaaaataaaaataaaa a score=456.0 s hg17.chr17_random 2589588 4 + 2618010 gtag s panTro1.chr19 42858269 4 - 82489036 gtag s mm5.chr11 99196579 4 + 121648857 ATAT a score=22866.0 s hg17.chr17_random 2589592 156 + 2618010 gcagcttcatggagtttgaaa--------------------------gcacatgaatttgtgtaatcaacacccagatcaagatacagaatagcatttcaaaatgta----------gaacatca------accttagaaattctttcttgttgctttccagccagtacatctctctgacagagacaaccactactct s panTro1.chr19 42858273 156 - 82489036 gcagcttcatggagtttgaaa--------------------------gcacatgaatttgtgtaatcaacacccagatcaagatacagaatagcatttcaaaatgta----------gaacatca------accttagaaattctttcttgttgctttccagccagtatatctctctgacagagacaaccacgattct s mm5.chr11 99196583 171 + 121648857 GCAGCCTCCGGAGGTTTGAAAACACACACACACACACACACACACACACACACACACACACACACTCATCACCCAGATTTAGATATATAA-AGAATATCAGA-------------------ACCA------GCCCTGTAACTGCCCTCGTGTT-CTTTCCAGCAGAATTACCCTCCTTGTAGTGACCACCACTTATGT s rn3.chr10 88484872 164 + 110733352 GTAGTCTGTGGAGGTTGGAAA--------------------------ACACACACACACACACA-----CACACACATGCACGCACACACACGCATCACCAAATTTAGAGATATAATGAATATCAGATGCCAGCCTATAACTTCCCTCATGTT-CTTTCCAGAAAAACCACCCTCCTTGTAGTGGCCACCACTTCA-- a score=4551.0 s hg17.chr17_random 2589748 39 + 2618010 tatctctaaccatgtcaaagatgagttttgcctgttctt s panTro1.chr19 42858429 39 - 82489036 tatctctaaccatgtcaaagatgagttttgcctgttctt s rn3.chr10 88485036 36 + 110733352 GAGACACAACACTATC---GACAAGCCTTGCTTGTTCTA a score=2286.0 s hg17.chr17_random 2589787 9 + 2618010 gaagttaat s panTro1.chr19 42858468 9 - 82489036 gaagttaat s mm5.chr11 99196962 9 + 121648857 GAAGCATAT s rn3.chr10 88485072 9 + 110733352 AAAGCTTGT a score=43653.0 s hg17.chr17_random 2589796 153 + 2618010 ataaatgtagtcatactgttcgtactgttttgtgcctgacttcttcagctcaatatgtttttgagatttttccatggtgtcatgagtaccggcagttcattctttattgttgttgcatactactccattacataaacatgtcacagtttgttg s panTro1.chr19 42858477 153 - 82489036 ataaatgtagtcctactgttcatactgttttgtgcctgacttcttcagctcagtatgtttttgagatttttccatggtgtcatgagtaccagcagttcattctttgttgttgttgcatactactccattacataaacatgtcacagtttgttg s mm5.chr11 99196971 145 + 121648857 ATAAATATAATCGTATTGTTTATATTTCCTTGTCCCTGACCCCTTCATCTCATCAGGTATCTGAGATTCATCCACACTCTGATA---ACTAGTAGCTCA----TTATTGCTGCTGGGTACTATACCATTACAT-ATTATGCCTCAGTTTATTG s rn3.chr10 88485296 145 + 110733352 ATAAAAAAAATTATATTGTTTATATTTCCTTGTCCCTGACCCCTTTGTCTCATCAGGTATCTGAGATTCACCGGTACTCTGATA---ACTAGTAGCTCA----TTACTGCTGCTGTGAACTATACCATTACCC-AGTATGTCTCAGCTTACTG a score=116771.0 s hg17.chr17_random 2589949 1328 + 2618010 tccattattctgtttatgagcagttatttttattttagtgctattaagaatatagctgctataagcattcttgtgcaaatattattgtgtgtataaaatatatacattcatctctcttggacatatacctaaccatgaaattgctaggtccttgggggaggtCCTTTGTCagagagagagagagagagagagagagaTAGTATATTACTGTATAAATAAATATGTGTTTATTTATTTTTATACACATATTTATTTATAGagtcatgtgccacataatgacatttcagtcaacaatgatggaacatacacatacaaaagctgtcccaaaaaactataatgtcatatttttattgtaccttttctatgtttaaatgtgtttccagataacaaatacttaccattgtgttacagttgcctactgtattcagtacagtaacatgctgtgcaggtttacagcctatgagcaatagactataccatatagcctaagtgtgttataggctataccatccaggttcatgaagtccactgtgatgtttacacaacaacaaaatcactaaaggtgaatttctcagaatatattcccattgttaCAAAAGATATGACGTTGTGTATGTATGTGTTCTAATGTGTGCGTTGGGGGGTGG---GTGTATGAAGAGAGAGAGAGaatattttaacccaggctgtagcttgccttttcactttcttagctatttatctgatcaacaaaaggttttcattttgatgaagtctaatctatttattatagtgtcctccatgagcttagaagtcttct-catggcagaaggttatgaatataatcttctgagttttcttctaaaaactttagacttgaaatcttcacaattaagtgtttaatccaacctgaattaagttttatacgtagcgtgaggtagagatcaagatgtattcattttggctatacaagtatccacttgattcagcgacaagtattgaacagtattgaaaaaacagtattgaaaaagctttccttttctcattgacttgctttgggatctttgtcagaaatcaattgaccacatatatgtgagtctatttctaaactctatattctttctcattgatctactttccaacccttatgccaatatcacactgttttaattgtagtagcattatagtaacttGCATGAATTTACAtttcattgccacaagcaatgagagtgctataggcagtgaatgtatctgttatcaaactttgatttttttcagtttgataggtggaaaactaaaatatctcagtataatttaaatttacatttctcttttcatgagtgacattgagca s panTro1.chr19 42858630 1321 - 82489036 tccattattctgtttatgagcagttatttttattttagtgctattaagaatatagctgctataagcattcttgtgcaaatattattgtgtgtataaaatatatacattcatctctcttggacatatacctaaccatgaaattgctaggtccttgggggaggtCCTTTGTCAGAGAGAGAGAGAGAGAGA--------TAGTATATTACTGtataaataaatatgt--ttatttatttttatacacatatttatttataGagtcatgtgccacataatgacatttcagtcaacaatgatggaacatacacgtacaaaagctgtcccaaaaaactataatgtcatatttttattgtaccttttctatgcttaaatgtgtttccagataacaaatacttaccattgtgttacagttgcctactgtattcagtacagtaacatgccgtgcaggtttacagcctatgagcaatagactataccatatagcctaagtgtgttataggctataccatccaggttcatgaagtccactgtgatgtttacacaacaacaaaatcactagaggtgaatttctcagaatatattcccattgttaCAAAAGATATGACGTTGTGTATGTATGTGTTCTAATGTTTGTGTGGGGGGGTGGTGGGTGTATGAAGAGAGAGAGAGaatattttaacccaggctgtagcttgccttttcactttcttagctatttatttgatcaacaaaaggttttcattttgatgaagtctaatctatttattatagtgtcctccatgagcttagaagtgttttgcatggagaaaggttatgaatataatcttaggagttttgttgtaaaaactttagactagaaatgttcacaataaagtgtttaatccaacctgaattaagtattatacgtagcgtgaggtagagatcaagacgtattcattttggctatgcaagtatccacttgattcagcaacaagtattgaacagtattgaaaaa-cagtattgaaaaagctttccttttctcattgacttgctttgggatctttgtcagaaatcaattgaccacatatatgtgagtctatttctaaactctatattctttctcattgatctactttccaacccttatgccaatatcacactgttttaattatagtagcattatagtaacttGCATGAATTTAcacttcattgccacaagcaatgagagtgctataggcagtgaatgtatctgttatcaaactttgatttttttcagtttgataggtggaaaactaaaatatctcagtataatttaaatttacatttctcttttcatgagtgacattgagcg a score=273.0 s hg17.chr17_random 2591277 1 + 2618010 t s panTro1.chr19 42859951 1 - 82489036 t s mm5.chr15 62282779 1 - 104138553 T a score=3212.0 s hg17.chr17_random 2591278 84 + 2618010 tttttcttatttt--aagt----------gccttttgtattttccttt-------tggtcactgtctagag----------tgtaattgtaat----attgtttcccagtttgtcat s panTro1.chr19 42859952 84 - 82489036 tttttcttatttt--aagt----------gccttttgtattttccttt-------tggtcactgtctagag----------tgtaattgtaat----attgtttcccagtttgtcat s mm5.chr15 62282780 73 - 104138553 TTTTTCTCAT--------------------CCATTTCTATCGTCTTATGA-GAGATTGTTCTTGTTTAA-------------TTAGTTGAAGT----GTTCTTTCATG------TGT s canFam1.chr5 79665792 116 + 92064832 CTTTACTTATTTTTAAAATTGGATGGTTGGCTTTTTCTTTTTTCTTTTTAGGAAGTGATTATCTATTAGGGAGCTTAGTCTTTTGCCTTTGATACAAATTGTGTC-CAGTTTAGCAt a score=9285.0 s hg17.chr17_random 2591362 91 + 2618010 cttgtcttctggttttACAGGTTGTATTTTTCACCCAAG--CACAAGTTCAAACACTGTTA-TTTTATGGAGTCAAATCTAACAG-----TTTTTTACG s panTro1.chr19 42860036 90 - 82489036 cttgtcttctggttttACAGGTCGTATTTTTCATCCAAG--CACAAGTTCAAACACTGTTA-TTTTATGGAGTCAAATCTAACAG-----TTTTT-ACG s mm5.chr15 62282853 88 - 104138553 TTTGCTTTCTGGCTTTGACTATAGCTTTTCTCCCCCCATTCCCCATGTTTGA-----------TATGTATAGCAACATTTACCAAGTTTTTTTTTTATA s canFam1.chr5 79666091 85 + 92064832 CATTTCTTTT-ATTTTGTGGATTGTTTATTTGTTT------TGCATGCCTGA--ATTTTTATTTTCATGTAGTCAAATCTGTCAG-----TCTTTTACA a score=33558.0 s hg17.chr17_random 2591453 120 + 2618010 GCTTCTTAATTTTGAGTCATCATTGGAAAAGTCTTCTGACTCCAAATTTATAAAATAA---TTATCCTTTTGGGCATATTTATTA--TTTATTTTTCATATCTCAATCTTTGATCTACTTGTAAT s panTro1.chr19 42860126 120 - 82489036 ACTTCTTAATTTTGAGTCATCATTGGAAAAGCCTTCTGACTCCAAATTTATAAAATAA---TTATCCTTTTGGGCATATTTATTA--TTTATTTTTCATATCTCAATCTTTGATCTACTTGTAAT s mm5.chr15 62282941 122 - 104138553 GTTTCTGATTTTTGAATCATGTTTTAAAAGATTATCCCACTCCATATTTATAAAGATA---TTATTTTTTCTAGTGTAATTATGATTTTTATATTTTCTGGTTAACTCTTTGATCTATTTATAAT s canFam1.chr9 14381807 124 + 53642819 GTTTCTTTATTTTG-GTCCTTTTTATAAAGGCTTTCTGACTTCAAATTTATAAAAGAACTCTCATATTTATTAGTACAATTATGATTTCCTTTTTTCATATTTGAATCTTTGATCAATTTGTAAT a score=21800.0 s hg17.chr17_random 2591573 125 + 2618010 TCGTCCCACTGTAAAGGATGAAGTATGGTTTCAACATTCCCTGCCCCCAC----ACCAAAGGGAATACAAAATTGTCCCCAAAGTACATATAATACATATAACGGTCTACCTTTTCCCCATGGCtttta s panTro1.chr19 42860246 116 - 82489036 TTGTCCCACTGTAAAGCATGAAGTATGGTTTCAACATTCCCTGCCCCCAC----ACCAAAGGGAATACAAAATTGTCCCCAAAGTACATATAA---------CGGTCTACCTTTTCCCCATGGCtttta s canFam1.chr9 14381931 120 + 53642819 TTGTCCTACTGTAAGGCATGAAGTATGATTCCAATATTCCCTGCCCCACCTTCGACCTCAAGTGAAATAGAATTGTCCTCAAATTATATATGA---------TAGCCTATCTTTTCCCCACTGATTTTA a score=97736.0 s hg17.chr17_random 2591698 1065 + 2618010 ttttgtattttattttattttatt-----aaaaatgaaatcgcactgtgttgcccacctgaacttgaactcctgggttcaagtaattcttctgcctcagcctcctacagaatgggagaaaatttttgcaatctgtccatctgacaaagggctaatatacagaatctacaaggaacttaaacaaatttacaagaaaaaacaaacaaccccatcaaaaaaatgggctaaggatatagaaagacacttctcaaaagaagacatttatgtggccaacaaacatatgaaaaaagctcatcatcactggtcactagagaaatgcaaatcaaaccacaatgagataccatctcacaccagttagaatgacaatcattaaaaagtcaggaaacaacagatgctggagaggatggagagaaattggaacacttttacacagttggtgggagtgtaaattagttcaaccaatgcagaagacagtgtggcaatttcttaaggatcaagaaccataaatacagtttgacccagcaatcctattacttgatacatacccaaaggattataaatcattctactataaagacacatgcacatgtatgtttattgcagcactattcacaatagcaaagacatggaaccaacccaaatgcccatcaatgatggactggataaagaaaatgtggcacatatacaccatggaatactatacagccataataaaggattagttcatgtcctttgcagggacatgaataaagctggaaaccatcattctcagcaaactcacacaggaacagaaaaccaaacactgcatgttctcactcataagtgggagttgaacaatgagcacacatggacacagggaggggaacatcacaccggggactgtgagggggtgaggggctaggggtgggatagcattaggagaaatacctaatgtagatgacaggttgatgggtacagcaaaccaccatggcacttgtatacctatgtagcaaacctgcacgttctgcacatgtatcccagaactcaaagtacaaAAAATCTCATAATTCAAGAAAAAAAAAAAaggatgaa s panTro1.chr19 42860362 1067 - 82489036 ttttgtattttattttattttattttattaaaaatgaaatcgcactgtgttgcccacctgaacttgaactcctgggttcaagtaattcttctgcctcagcctcctacagaatgggagaaaatttttgcaatctgtccatctgacaaagggctaatatacagaatctacaaggagcttaaacaaatttacaagaaaaaacaaacaaccccatcaaaaaaatgggctaaggatataaaaagacacttcccaaaagaagacatttatgtggccaacaaacatatgaaaaaagctcatcatcactggtcactagagaaatgcaaatcaaaccacaatgagataccatctcacaccagttagaatgacgatcattaaaaagtcaggaaacaacagatgctggagaggatggagagaaattggaacacttttacacagttggtgggagtgtaaattagttcaaccaatgcggaagacagtgtggcaatttctcaaggatcaagaaccataaatacagtttgacccagcaatcctattacttgatacatacccaaaggattataaatcattctactataaagacacatgcacatgtatgtttattgcagcactattcacaatagcaaagacttggaaccaacccgaatgcccatcaatgatggactggataaagaaaatgtggcacatatacaccatggaatactatacagccataataaaggattagttcatgtcctttgcagggacatggataaagctggaaaccatcattctcagcaaactcacacaggaacagaaaaccaaacaccgcatgttctcactcataagtgggagttgaacaatgagcacacatggacacagggaggggaacatcacaccggggactgtgagggggtgaggggctaggggtgggatagcattaggagaagtacctaatgtagatgacaggttgatgggtgcagcaaaccaccatggcacttgtatacctatgtagcaaacctgcacgttctgcacatgtatcccagaactcaaagtacaaAAAATCTCATAATTCAAGAAAAAAAAa---ggatgaa a score=3887.0 s hg17.chr17_random 2592763 19 + 2618010 aaggggccactagctgagg s panTro1.chr19 42861429 19 - 82489036 aaggggccactagctgagg s canFam1.chr9 14383021 19 + 53642819 aagaggccacaggctaagt a score=100.0 s hg17.chr17_random 2592781 1 + 2618010 g s rn3.chr10 22251219 1 - 110733352 G a score=496998.0 s hg17.chr17_random 2592782 1064 + 2618010 -atgtggacagcctgtagaagctggaaaaggcaagaaaa-tgatgttcccctagagcctccataaaggattagcagcAAGTAACTT----------TCTGAAGAAAATGCTGAGTAA--GTATTCCTCAGAAAGAAAACACACCCCTTTCAATGAATCCTATTTAAACATCCAGTATAAACCAACACTGTGATACATTTTTATCTAATGTAATACCACAAGCAAACACCAAGCACTAAAAATGTTATAAAATGTGGACTTTGGAAAACCAAAAGAGAGCTAGTCTCTTTTCCAAGAAATTTCTTATTAGCAATCAAACCCTACCTTTTCCCCATGGCttttattttatttcatattttatttatattttattttatgttattacattttatGGAAAGCTAAAACATAAATCTAGCAATTATCTTTAAAACAAGACTTTTAAAAGACTAACA-TTTTAATTCATACTCACATTGTCCTGACACTGAAAATGGGGAAACCATTTGGGCAGAACAAACTAAAATATTGACTTCTGATTTCTAAGTTTACCAATAATTATTAAACATTAATAGTTTCCCTTTTCTAGAGAAGAAAGG-AAAAGAAGGATGAACTCATTCCTGGTTAAGCTCAGTGCCAAGTGGAGAGGTCAACAAGAATGTAATGAACTTAGTATACTCACACCTGCTTAATAATGGATGCTGTTAGGA---------CAGTTCCTTTTGAAGACATAATTTGAAGCTCTGGGTCCAATAGACAAGTAGTAGTTATGATGGGTAATAACTTACTAACAGCCTAAATGCACATGTTTATGAGACAAATAACTCTTCTTAAGCAAGTAAAAAGCAGACTAATAAGATGTTCCTACAGGATTTGATATAAACCTGAGAAAGGAAAACATCCCACCTG-TGTGACACCACGTAGAAGAGAGGCTATATAAGCACTTCAAAGAGGAAAACACCAAGAGCCTTGGAATTCAGACTCTGTGGAGGTGGCTTGAGCTTTTCATCCTGGTGACCACAGACCTGGAA-CAAACTAAAGCCAGACACATACTATGGACACCAAGGGCTGTACAACAACCAATTCTC s panTro1.chr19 42861448 1065 - 82489036 -atgtggagagcctgtagaagctggaaaaggcaagaaaa-tgatgttcccctagagtctccataaaggattagcagcAAGTAACTT----------TCTGAAGAAAATGCTGAGTAA--GTATTCCTCAGAAAGAAAACACACCCCTTTCAATGAATCCTATTTAAACATCCAGTATAAACCAACACTGTGATACATTTTTATCTAATGTAATACCACAAGCAAACACCAAGCACTAAAAATGTTATAAAATGTGGACTTTGGAAAACCAAAAGAGAGCTAGTCTCTTTTCCAAGAAATTTCTTATTAGCAATCAAACCCTACCTTTTCCCCATGGCttttattttatttcatattttatttatattttattttatgttattacattttatGGAAAGCTAAAACATAAATCTAGCAATTATCTTTAAAACAAGACTTTTAAAAGACTAACA-TTTTAATTCATACTCACATTGTCCTGACACTGAAAATGGGGAAACCATTTGGGCAGAACAAACTAAAATATTGACTTCTGATTTCTAAGTTTACCAATAATTATTAGACATTAATAGTTTCCCTTTTCTAGAGAAGAAAGG-AAAAGAAGGATGAACTCATTCCTGGTTAAGCTCAGTGCCAAGTGGAGAGGTCAACAAGAATGTAATGAACTTAGTATACTCACACCTGCTTAATAATGGATGCTGTTAGGA---------CAGTTCCTTTTGAAGACATAATTTGAAGCTCTGGGTCCAATAGACAAGTAGTAGTTATGATGGGTAATAACTTACTAACAGCCTAAATGCACATTTTTATGAGACAAATAACTCTTCTTAAGCAAGTAAAAAGCAGACTAATAAGATGTTCCTACAGGATTTGATATAAACCTGAGAAAGGAAAACATCCCACCTG-TGTGACACCACGTAGAAGAGAGGCTATATAAGCACTTCAAAGAGGAAAACACCAAGAGCCTTGGAATTCAGACTCTGTGGAGGTGGCTTGAGCTTTTCATCCTGGTGACCACAGACCTGGAAACAAACTAAAGCCAGACACATACTATGGACACAAAGGGCTGTACAACAACCAATTCTC s mm5.chr11 22455555 955 - 121648857 -ATGTGGGTCACCTCTAGAAGCTGTGAAAAGTGAGAAAAGTCATTCTCTCTTGGAGGCTGTATGAAGAATCAAAACCAAGTAACTTATTTTAAAAATTAGAAGAAGAAGGTGAAAAGCTGTTTCCCTCAGAAATAACATGCCTGCCTTTC---------------AACATCAAATCAAGCCCAACA----GGTTCAT--------------GTACCACA--CAAACACTGGGCAATATGAATGCTATCAAATATAGACTGTGGGCCATCAGAAAGTAATCAGCGTCTTTCCCAGGGAATGTTCTATTAGCAGTCAAATCCTATC------------------------------------------------------------------AGAAAAGCTCAAACATGATCCCGGCAATTGGATTGGTCAAACTCTGTTTA-------AATA-TTTTAATCTATATTCACCATCTCCAAGTGGTAAAAATGGAGAAATGAGCCAGTCAGATCAAAGTCAAA-ATAAAATGCTGATTTCTAAGTTCTCCGGTAATTACAGGATATTACTAGTTTCCCTTTTCTGGAGAAGAAAGGAAAAAGAAGGTTGGACTCATTCCAGGTCAAGTTAAACGTCAGCCAGAAAGGTCGGCAAGGATTTAAAGGTCGAAACACCCTCACACCTGCTTAATGATGGGTGCTGTTAAGAGTGTGGCGGGAGTTCCTTTTGAAGACCCAGTGCGAAGCTCTGGACCGGAT-GACAAGTAGCAGTTGCGACGGGTAATAACTTAGTAACCGCCTAAATGCACATTTTTATGAGACAAGTAACTCTTCTC-----------GGGCAGATTAATGAGGAGTTCCTGTGGGATTCGACATAAACATGAGAAAGGAAAGCATGCCACCTC-TGTGTCACCACCTGGAAGGAAGGCTATATAAGCACTTCAAAGGAGAAAA-GCCACAGGC--TGGCATTTGGGCTTGGTTGAGGGTGCTTCGG---------GTGGTGACCTCAGACTCAGAGACAACGTGAAGCTGAACACACACCATGGATACCAAGGGCTCTACAGTGACGATTTCTT s rn3.chr10 22251220 933 - 110733352 -ATGTGGGGCACCTCTGGAAGCTGGGAAAAGTGAGAAAA-TGATTCTCTCTTGGAGGCTGCAT--------------CAGTAATCT----------TAAAAAATAAAATGTGAAAAGCTGTTTTCCTCAGAAATAACATGCCTGCCTTTT---------------AACACCAAATCAAGCCCAATG----GGCTCGT--------------GTACCACA--CAAACTCTGGAAAATAAGAATGCTATAAAATATAGACTATGGGCCATCAAAAAGTAGTCAGTGTCTTTCCTAAAGAATGCTCTGTTAGCAGTCAGAGCCGATC------------------------------------------------------------------GGAAAAGTTTAAACGTGATCCCAGCAATTGGATTGGTCAAGCTCTGTTTA-------AACATTTTTAATCCCGATTCACCATGCCCAAATGGTGAACATGGTGAAATGAGTTGGTCAGATCAAAGTCAAAAATCCAAGGCTGATTTCTAAGTTCTCTGATGATTATCAGATATGAATAGTTTCCCTTTTCTAGAGAAGAAAGG-AAAAGAAGATTGGACTCACTCCAGGTCAAGATAAACGCCAGCCGGAAAGGTTGGCAAGGATTTAAAGGTCGCAACACACTCACACCTCTTTAATGATGGATGCTGTTAAGAGTGTGGCGGGAGTTCCTTTTGAAGACCCAGTGTGAAGCTCTGCACCCGAC-GACAGGTAGCAGTTGCGACGGGTAATAACTTAGTAACCGCCTAAATGCACATTTTTATGAGACAACTAACTCTTCTC-----------AGGCAGATTAACGAGATGTTCCTGTGGGATTCGATATAAACATGAGAAAGGAAAACATCCCGCCTCTTGTGTCACCACCTGGAAGGAAGGCTATATAAGCACTTCAAAGGAGAAAA-ACCACAGGC-TTGGCATTTAGGCTCAGTTGAGGGTGCTTCTG---------GTGGTGACCTCAGACTCTGAGACAACGTGAAGCTGGACACACACGATGGATACCAAGGGCTCTACAGTGACTATTTCTT s canFam1.chr9 14383040 986 + 53642819 agcataaacagcctctagaagctgcaaaaggcaaggaaa-ttattctctcctagaacctccataaaggaTCAGAAACAAATAACTT----------TCTTAAGAAAATGATGAGAAA--GTATTCCTGAGAAAGTAAACACATGCCTTTCAATAGATCATGTTTAAACAATAAATATAAGCCAACACCATAACACATTTTTAGCTAATGTAATTCCACAAGCAAACACTGAGTGCTAAAAATGTCATAAAATGTGGGCTTTAGAAAACCAAAAGGTAACCAGCCTCTTTCCCAGGAAATTTCGTGTTAGTAACCAGACCCTACC------------------------------------------------------------------TGGCAAACTGAAACAGGAAACTAGCAACTATATTTAAAAAGATTCTTACTTAAAACTAACA-TTTTAACCCAT----ACAATGTCTGAACAATGAAAATGGGAAAATCGGTTGGGCGGAACAAAATAAAACA-------CTGGTTTCTAAGTTCACCAATAATTATTAGATATTAATAGTTTCCCTTTTCTAGAGAAGAAAGG-AAAAGAAGGATGAACTCATTCCTGATCAAGCTTAATGCCAGTTGGAGAGGTCAACAAGGATTTAATGAACTTAATATACTCACACCTGCTTAATAATGGATGCTGTTAGAAATGTGACGACAGTTCCTTTTGAAGACTTCATGTGAAGCTCTGGGTCCAAT-GACAAGCAGTAGTGGTGATGGGTAATAACTTAGTAACAGTTTAAATGCACATTTTTATGAGACAAGTAACTCTTCTCAGGCAAGTAAAAAGCAGACTAATGAGATGTTCCTATGGGATTTGATATAAACATTAGAAAGGAAAACATCCTGCCAGCTGTGACTCCACCTAGAGCAAAGGCTATATAAGCACTTCAAAGAGGAAATAACCAAGAAGCTTGGAATTCAAACACAGTCACAGCTGCTTGAGCTTTCC---ATCAGGACCACAGACT------GAAACGAAAACTGGGTGCTCACTATGGATACTAAAGGCTGTACA---ACGATTTCTT a score=68073.0 s hg17.chr17_random 2593846 187 + 2618010 CTTCAACCCCATGTCAAAACTGCTCTAGGA---TTACAAATGTTAGTACCATC---TCTTCTAACAACGGCTGCCATCCTGGTGGCCTTACAGT--CAACAACTGTCAAC----CAGCTGGCCACGTTCTCAGAATTCCCTGGGACCAGGGCTGCC-AACCCACTCCTCGCTTTTGTCGCAA-----------GCCCATCTACCTAATGAA------- s panTro1.chr19 42862513 187 - 82489036 CTTCAACCCCATGTCAAAACTGCTCTAGGA---TTACAAATGTTAATACCATC---TCTTCTAACAACGGCTGCCATCCTGGTGGCCTTACAGT--CAACAACTGTCAAC----CAGCTGGCCACGTTCTCAGAATTCCCTGGGACCAGGGCTGCC-AACCCACTCCTCGCTTTTGTCGCAA-----------GCCCGTCTACCTAATGAA------- s mm5.chr11 22456510 172 - 121648857 CTTCAACCCCACCCCAAAACTGCTCTGGGA---ATACAAATTTTAGGACGAACTCTTCTTCTAACAAGAGCTGTTGTCATGATGGC--------------------CAGT----CAACTGGCTGTGCTCTACAAACTCCCCAGGGCCAGGGCTGTG-GATCCAGCCCTTGCCTTTATCGATG-----------CCCTCATTACTTGATAAG------- s rn3.chr10 22252153 169 - 110733352 CTTCGACCCCACCCCAAAACTGCTCTGGGA---ATACAAATGTCAGGACTAAC---TCTTCTAACAAGAGCTGTTATCATGATGTT--------------------CAGT----CAACTGGCCATGCTCTACAAACTCCCCAGGGCCAGGGCTGTC-GCCCCAGCCCCTGCCTTTATCGCTG-----------CCCTAACTACTTGATAAG------- s canFam1.chr9 14384026 172 + 53642819 GTTCAACGCCACAGCAACGCTGCTCTCGGA---TTACAAATTTTCAGACCATT---TCTTCTAACGCTAACTGCCAACACAGTGGTCTTGAAGC--CAACAGCCGCCAAC----CAACTGGCCACGTTCTGT----------------GGGCTGCCAGACCCACTCCTTGTTTTTATTTCAC-----------ACCCATCTGCTTAATAAA------- s danRer1.chrUn 197924229 195 + 367113659 CTCCAACCCCAAGTC----CTGCTTTAGCACCTTCTCCAATAGCTGTTCCGTG---TCTTCAGTGACCGTTCCTCGTCATTGTAGA---ACAGTTACAACAAAAGCCCACAGTGTATATGGTTGCGGTGT----------TGGAGGAAGGAC--CC-GCATCTCTTCTTGCTCCTATCGTCCAAATACTTGCTCCCCATGTCCATTATACAAACTTGA a score=8814.0 s hg17.chr17_random 2594033 25 + 2618010 CAACTTCAATGCCCGTTTTTCTCTG s panTro1.chr19 42862700 25 - 82489036 CAACTTCAATGCCCGTTTTTCTCTG s mm5.chr11 22456682 25 - 121648857 AACCTACAGCTTCCATCCTTGTCTG s rn3.chr10 22252322 25 - 110733352 AACCTACAGCTTCCACCCCTGTCCG s canFam1.chr9 14384198 25 + 53642819 CAACGTCAATGCCTGTCTACCTCTG a score=1840.0 s hg17.chr17_random 2594058 2 + 2618010 GA s panTro1.chr19 42862725 2 - 82489036 GA s mm5.chr11 22456707 2 - 121648857 GA s rn3.chr10 22252347 2 - 110733352 GA s canFam1.chr9 14384223 2 + 53642819 GA s danRer1.chrNA 376803398 2 + 390413307 GC a score=14001.0 s hg17.chr17_random 2594060 15 + 2618010 TGACTGCAGCTGGTA s panTro1.chr19 42862727 15 - 82489036 TGACTGCAGCTGGTA s mm5.chr11 22456709 15 - 121648857 TGATGGCAGCAGGTG s rn3.chr10 22252349 15 - 110733352 TGACTGCAGCCGGTG s canFam1.chr9 14384225 15 + 53642819 TGACTGCGGCTGGTG s fr1.chrUn 39364224 15 - 349519338 CAGCTACAGCACGTC s danRer1.chrNA 376803400 15 + 390413307 TGGCTTCAACCTGTC a score=235093.0 s hg17.chr17_random 2594075 209 + 2618010 TGGTGAAGGCATCAAC---------AGTAATGAGAAGGAGACCATGCAAATCTTGAACGAGCGCCTTGCTAACTACCTGCAAAAGGTGCGAATGCTAGAACGAGAGAATGCTGAACTGGAATCTAAAATCCAGGAA---GAAAGTAACAAAG-AGCTCCC--TGTTCTATG-TCCTGATTACCTGTCTTACTACACTACCATTGAGGAGCTCCAGCAGAAGGTAA s panTro1.chr19 42862742 209 - 82489036 TGGTGAAGGCATCAAC---------AGTAATGAGAAGGAGACCATGCACATCTTGAACGAGCGCCTTGCTAACTACCTGCAAAAGGTGCGAATGCTAGAACGAGAGAATGCTGAACTGGAATCTAAAATCCAGGAA---GAAAGTAACAAAG-AGCTCCC--TGTTCTATG-TCCTGATTACCTGTCTTACTACACTACCATTGAGGAGCTCCAGCAGAAGGTAA s mm5.chr11 22456724 209 - 121648857 CACTGAAGGCATTAAC---------ACTCATGAGAAGGAGACCATGCAGATTTTGAACGAACGCCTTGCAAACTATCTGGAAAAGGTGCGGATGCTGGAAGGAGAGAACGCGGACCTAGAGGATAAAATCCAGGAG---GCATGCAGCAAGG-CGCTCCC--CATCCTGTG-TCCTGACTACCTGTCCTACTACACCACCATCGAGGAGCTGCAGCAGAAGGTAA s rn3.chr10 22252364 209 - 110733352 CTCTGACGGCATTAAC---------AGTCATGAGAAAGAGACCATGCAGATTTTGAACGAACGCCTTGCAAGCTATCTGGAAAAGGTGCGGATGCTGGAAGGAGAGAACGCGGACCTAGAGGATAAAATCCAGGAG---GAGTGCAGCAAGA-CACTCCC--CATCCTGTG-TCCTGACTACCTGTCCTACTACACCACCATCGAGCAGCTGCAGCAGAAGGTAA s canFam1.chr9 14384240 209 + 53642819 TGGTGAAGGCATCAAC---------AGTAATGAGAAAGAGACCATGCAAATCTTGAATGAGCGCCTTGCTAACTACCTGGAGAAGGTACGGACCTTGGAAAAAGAGAATGCTGAACTGGAATGCAAAATCCTGGAG---GAGTGTAACAAAG-AATTCTG--TGTTGTATG-TCCTGACTACATGTCCTACTACGCTACCATTGAGGAGCTCCAGCAGAAGGTAA s galGal2.chr27_random 596570 221 + 721164 TGGTGGAGGTGACGGCCTTCTTTCTGGCAACGAGAAGATAACGATGCAGAATCTGAACGACCGCCTGGCCACGTACCTGCAGAAGGTGCGAGCCTTGGAAGATGCAAATGCAGAATTAGAAGTCAAAATCCGAGAC---TGGTACCAGAAGGAAGCTCCCAGCAGCCCAGC-TCGAGACTACAGCAACTACTACAAGATAATTGAAGATCTCCAAGATAAGGTAT s fr1.chrUn 39364239 215 - 349519338 CGGGACGGACGACAACCTGATC---GGAAACGAGAAGTTCGCCATGCAGAACCTGAACGACCGCCTGGCCACCTACCTGGAGAAGGTGCGCTCGCTGGAGAAGGCCAACGGAGAGCTGGAGCTGAAGATCCGGCAGTATGTGGAGAGCAAGG-TCGGCCC--CACCAC----CCGAGACTACGGCGCCTTCTTCATCACCATCGCAGAGCTGCAGGGCAAGGTAA s danRer1.chrNA 376803415 212 + 390413307 ---TGATGGCATTGATTCGTCT---GCAAATGAGAAAGCCACCATGCAAAACCTCAATGATCGTCTGGCCTCCTACCTGGAGAAGGTGCGCATCCTGGAGAAGGAAAACGCAGATCTTGAGCTGAAGATCCGCCAGTTCCTGGACAGCAAGG-----CCA--CGCCTAATGCTCGTGACTACAGTGCCTACTATGCGACAATCAGTGACCTCCAGGCCAAGGTAT a score=-5327.0 s hg17.chr17_random 2594284 8 + 2618010 --GATTCCTA s panTro1.chr19 42862951 8 - 82489036 --GATTCCTA s mm5.chr11 22456933 7 - 121648857 --GA-GCTCA s rn3.chr10 22252573 7 - 110733352 --GA-GCTCA s canFam1.chr9 14384449 8 + 53642819 --GATTCTTA s galGal2.chr27_random 596791 8 + 721164 --GACGCTCA s fr1.chrUn 77130219 6 - 349519338 ----GGCTCG s danRer1.chrNA 376803627 3 + 390413307 GTG------- a score=13827.0 s hg17.chr17_random 2594292 97 + 2618010 --------AGAACCTGTTTAATCGTGTTGTGAATTAATGG-TTTCCAAGCAACAGTT---ATTTGCTAAACTTTAATATTTTTTGTTCAGTTGATGCTG--AAAATTTTTT s panTro1.chr19 42862959 97 - 82489036 --------AGAACCTGTTTAATCGTGTTGTGAATTAATGG-TTTCCAAGCAACAGTT---ATTTGCTAAACTTTAATATTTTTTGTTCAGTTGATGCTG--AAAAATTTTT s mm5.chr11 22456940 97 - 121648857 --------GCAAGATGCTGAATTAAACTGTGGATGGATGC-TCTCCACACAATGGTT---ATCTGTTTAATTTTATTCATTCTAGAACCTTCTGTGCTG--CTATGTTTAA s rn3.chr10 22252580 97 - 110733352 --------GCAATGCGCTGAATCAAACTGTGGATCAATGC-TCTCCACACCATGGTT---ATCTGCTCAATTTTATTCGTTCTAGAACTTTCTATGCTG--CTATGTTTTT s canFam1.chr9 14384457 98 + 53642819 --------AGAATGTGTAT-ATCAGGTTGTGTCATGATAT-TCTCCAAGCAATAGAC---ATTTGCTAAGCCTTAATATACTTAGTTCATTTTATTTTGGAAAAGATATTT s fr1.chrUn 77130227 89 - 349519338 -----------AGTTATTG--CTAAGTAACATATTAAATC-ATTCCACACTGTCAGTAACATTTGCTGAG----AATAGGTTTTGG--AATTAATACTT--ATGAGTTTGT s danRer1.chrNA 376803630 97 + 390413307 ACAACTTTTGAATGTGTTG-ATTAGTTTA---ATCATTGCATTTCCAAACAA---AC---AAATTCCAAATATCTTTTTATGAAGG--TTTTGATGCTT--CAAATAATTT a score=0.0 s hg17.chr17_random 2594389 5 + 2618010 TGAAG a score=-319.0 s hg17.chr17_random 2594389 5 + 2618010 TGAAG s panTro1.chr19 42863056 5 - 82489036 TGAAG s mm5.chr11 22457037 5 - 121648857 AAAAA s rn3.chr10 22252677 5 - 110733352 TTTTA s canFam1.chr9 14384555 5 + 53642819 TGTAG a score=5519.0 s hg17.chr17_random 2594394 59 + 2618010 AATAGAAAAATTTCTTGAGTGAAATT-------------------------------------------------GTCATCTTGAGGCAGCATTCAGAGTCTGATAGT s panTro1.chr19 42863061 59 - 82489036 AATAGAAAAATTTCTTGAGTGAAATT-------------------------------------------------GTCATCTTGAGGCAGCATTCAGAGTCTGATAGT s mm5.chr11 22457042 108 - 121648857 GAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAACTTGAGATGGTACACAAAGTTCTATAGT s rn3.chr10 22252682 43 - 110733352 ATTAAAAAAA-----------------------------------------------------------------GAAAATTTGACATAATATACAAAGTTTTATAGT s canFam1.chr9 14384560 59 + 53642819 AATAAGAAAATATCTTGAATGAAATT-------------------------------------------------ATCATCTTGAGGCAATATTCAGAGTTTTATACT s danRer1.chrNA 376803727 54 + 390413307 AAGAAAAGCATTGCATTTGTCAA----------------------------------------------------GTTCTCCCATAAGAGTGGTCTAAAATTGATC-- a score=2648.0 s hg17.chr17_random 2594453 7 + 2618010 ATTTCTg s panTro1.chr19 42863120 7 - 82489036 ATTTCTg s mm5.chr11 22457150 7 - 121648857 TTCTTTG s rn3.chr10 22252725 7 - 110733352 TCCTTTG s danRer1.chrNA 376803781 7 + 390413307 ATTTATG a score=30937.0 s hg17.chr17_random 2594460 341 + 2618010 gtcaggcgcagtgatgcacacctgtaatcctaacactttgggaggctgaggcagacagatcacttgagcccaggagttctagaccatcctgggcaacatgatgaaattccatccttacacacacacacacacacacacacatacacacacaaaaaaaaattagatgggcgtggtggcacatgcctgtggtcccagctacttgggaggctgaggtgggaggatcacttgagcccaagaggttgaggctgccatgagccaagatcctgccactgcactccagcccagacaaaagtgagactatgtctttaaaaatcagaaacaaaaagaaGAGTCTCATGGTG s panTro1.chr19 42863127 339 - 82489036 gtcaggcgcagtgatgcacacctgtaatcctaacactttgggaggctgaagcagacagatcacttgagcccaggagttctagaccatcctgggcaacatgatgaaattccatccttacacacacacacacacacatacacacacacacacaaaaaaa--ttagatgggcatggtggcacatgcctgtggtcccagctacttgggaggctgaggtgggaggatcactcgagcccaagaggttgaggctgccataagccaagatcctgccactgcactccagcccagacaaaagtgagactctgtctttaaaaatcagaaacaaaaagaaGAGTCTCATGGTG a score=733.0 s hg17.chr17_random 2594801 11 + 2618010 --TTTCCTTTCTC s panTro1.chr19 42863466 11 - 82489036 --TTTCCTTTCTC s canFam1.chr9 14384619 11 + 53642819 TATTTGTCTTC-- a score=3326.0 s hg17.chr17_random 2594812 11 + 2618010 CAGAAATACAC s panTro1.chr19 42863477 11 - 82489036 CAGAAATACAC s rn3.chr10 22252738 11 - 110733352 CAAGAGTATGT s canFam1.chr9 14384630 11 + 53642819 CAGGGATACAT a score=112694.0 s hg17.chr17_random 2594823 438 + 2618010 TCTACCA--TTATAACTAGATGACTCAGGACCAAAAGATGTTAACAGCAAGTTGTTGCCATTTTTTA-------------------------------------------------------AATAAAAATAGGGAAACAGAGATC-----AGAGAAAATAA--------------ATTTTG--CTTTAATGAGTTTCTAAGCAA-TTTAGTTTTTATCCATTTTTCAACCATCACCACCTTTTTCTCCTTTTATGCTTATGTTATCATCTCCACATTGCTTGGTT-----TGTTTCTACACCAAACCTAAGTTTGTTATGCACAGACGTA-----------TTCTGCTACTACATAT-CTGGATTTATTCAG-Tttta-ttcattcaacaaatgtttactgagcagcaacaacattgggccaaacattgttctagattctgggaaaatattgg--tgacctttaaaaagtccctgccctcatggagttgacattctagtggaTCATGGT--ATTTATATAAATTTAGGATGGATtttat s panTro1.chr19 42863488 493 - 82489036 TCTACCA--TTATAACTAGATGACTCAGGACCAAAAGATGTTAACAGCAAGTTGTTGCCattttttattttttattttttatttattttttttaCAGCTAAAATCATTGTTGCCATTTTTTAAATAAAAATAGGGAAACAGAGATC-----AGAGAAAATAA--------------ATTTTG--CTTTAATGAGTTTCTAAGCAA-TTTAGTTTTTATCCATTTTTCAACCATCACCACCTTTTTCTCTTTTTATGCTTATGTTATCATCTCCACATTGCTTGGTT-----TGTTTCTACACCAAATCCAAGTTTGTTATGCACAGACGTA-----------TTCTGCTACTACATAT-CTGGATTTATTCAG-Tttta-ttcattcaataaatgtttactgagcagcaacaacattgggccaaacattgttctagattctgggaaaatactgg--tgacctttaaaaagtccctgccctcatggagttgacattctagtggaTCATGGT--ATTTATATAAATTTAGGATGGATTTTAT s mm5.chr11 22457174 430 - 121648857 TCTGCCATTTTATAACCAAATAACTCGGGACTGAAACTT------AATGAGTCGCTTCCACAGCTTA---------------------------------------------------AGTAAAGAGAAAGAGAAAAACAGAGAGAGAGAGAGAGAGAACAGGGCTCTGAGAAGCTATTTTGACTTTTAAAAATTCTCTAAATAGTTTTAGTGTTTATCCATGTTACAACAACTAGTGCC---------TTTCATACCCACGTTGTCATTGTGACAGTATTTAAATA---GTGTCTCTATACCAAACCTGTTTCCGGTCT------AATCA-----------TTCT-CTGATGCCTTC-CTGGGTTTACTTAATTTTTA-TTTTTTCCACAAATATTTACTAAACACCAACGAAAATGTTCCAGCCACCATTCTAGGCTCTGAGAA------------------AAAATATGTCTGGCCTCA--AAATTG-CATTCTAGAATGCCAAGGTAAATTTGGGGAAATGTAGATAAGACATGCT s rn3.chr10 22252749 411 - 110733352 TCTGCCATTTTATCAACAAATAACTCAGGGCTGAAACCT------AATGAGTTGCTACCACAACTTA-------------------------------------------------AATTTAAAAAGAGAGAGAG-AACAGGGCTC-----TGAGAAGCT----------------ATTTTGA-TTTTAAAAATTCTCTAAATAGTTTTAGCATTTATCCATGTTACAGTGGCTAGTGCC---------TTTCAAACCCACATTGTCAT-TTAAGAGTATTTAAAGAG-TGTGTCTCTACACCAAACCTGTTTCCTGTCC------ATTCA------------TCTACTGCTGCATTC-CTGGGTTTACTTAATTTTTATTTTTTTCCACAAATGCTTGCTAAGCACCAACAAAAATGTTCCAGCCACCATTCTAGGCTCTGAGAAAAAATATGTCTGACCCCCAAA--------------------TTG-CATTCTAGTATGCCATGGTACATTTGGGGAAAATTAGAAAAGACTATAT s canFam1.chr9 14384641 433 + 53642819 TCTGCTATGTCAGAAGTGTGTCAACATGTGTCAAAATGTGT----CACCTATTGCTGCCATTTCTTT-------------------------------------------------------AACAAAAATAAGAAAACAAGGATC-----TGAGAAAGAGC--------------ATTTTG--CTCTAATAAGTCCCTTAACAG-TTTAGGTTTTATCCATTTTTCAATCATCACCACTCTTTCCCCCTTTTATGCTCATTTCATCATCTCCAAATTGTTTCAATGGTTTTTTTCCAACACCAAGCCTATCTCCTTCCT------AATCATAGTGATGTGCTGTTGCTACTGCACATGCCAGATTTATCCCA-Tttta-cttgttcaacgactatttactgaacaccaccgacaacacactagacattactctaggctctgggaaaatattaa--tgaact--aaaaagcccctgccctcatgacgattacattccagaggaT--------------GCAAATCAAATGCAGATTTTAT a score=91.0 s hg17.chr17_random 2595261 1 + 2618010 t s rn3.chr10 22253160 1 - 110733352 T a score=56858.0 s hg17.chr17_random 2595261 629 + 2618010 tttattttttatttatttatttatgtatttattgagatggagtctcactctgtcaccaggctggagtgcaatggcgcgatctctgctcactgcaacctccagctcccaggttcaagcgattctccctcctctgcctctctagtagctgggtctacaggcacgcaccaccacacccagataatttttgtattttttttttttttt-gagacggagtctcgctctgtctcccaggctgcagtgcagtggcgcgatctcggctcactgctagctccgcttcctgggttcatgccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacgcccagctaattttttttttttttatattttt------agtagagacggggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatctacccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccaatttttgtattttttagtagagacagggtttcaccatgttggccaggatggtcttgatctcttgacctcgtgatccgcccgcctcagcctcccaagtgctgatattacatgggtgagccactgctctcagccTGG s panTro1.chr19 42863981 636 - 82489036 tttattttatatttatttatttatgtatttattgagatggagtctcactctgtcaccaggctggagtgcaatggcgcgatctctgctcgctgcaacctccagctcccgggttcaagcgattctccctcctctgcctctcgagtagctgggtctacagtcacgcaccaccacacctagataatttttgtattttttttttttttttgagacggagtctcgctctgtctcccaggctgcagtacagtggcgcgatctcggctcactgctagctccgcttcctgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcacccgccaccacgcccggctaattttttttttttttttttttttttttttagtagagacggggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccaatttttgtattttttagtagagacagggtttcaccatgttggccaggatggtcttgatctcttgacctcgtgatccgcccgcctcagcctcccaagtgctgatattacatgggtgagccactgcgctcagccTGG a score=1365.0 s hg17.chr17_random 2595890 5 + 2618010 ATTTT s panTro1.chr19 42864617 5 - 82489036 ATTTT s canFam1.chr9 14385074 5 + 53642819 ATTTT a score=0.0 s hg17.chr17_random 2595895 8 + 2618010 TTAACAAC a score=1343.0 s hg17.chr17_random 2595895 7 + 2618010 -----TTAACAA s panTro1.chr19 42864622 12 - 82489036 ATATTTTAACAA s mm5.chr11 22457604 12 - 121648857 ATATTTTAGTAG a score=-150.0 s hg17.chr17_random 2595902 1 + 2618010 C s panTro1.chr19 42864634 1 - 82489036 C s mm5.chr11 22457616 1 - 121648857 G a score=94592.0 s hg17.chr17_random 2595903 218 + 2618010 AACAACA-AAAAAAATACTTAAAAG-TTTCTAGTTAAGTACTTTTTGCTGA-TCTTTTAGGAAAATAACAGGAAATCTGACTTTCTGAAGTTT--TCCAAGCTTTGTGAGCATAGCTATGAAGATTAATAAAAAGTCTACTTAGCCTTCCCCTGTTACTTGACACACACACAAACCCCTTGGTTCTTAAAGAAGGAAA-TCTTGGTGTTTGCTTCATTTGTGTG s panTro1.chr19 42864635 215 - 82489036 AACAA----AAAAAATACTTAAAAG-TTTCTAGTTAAGTACTTTTTGCTGA-TCTTTTAGGAAAATAACAGGAAATCTGACTTTCTGAAGTTT--TCCAAGCTTCATGAGCATAGCTATGAAGATTAATAAAAAGTCTACTTAGCCTTCCCCTGTTACTTGACACACACACAAGCCCCTTGGTTCTTAAAGAAGGAAA-TCTTGGTGTTTGCTTCATTTGTGTG s mm5.chr11 22457617 207 - 121648857 ---------AAAACATACAGAAATGATTTTTATTTGCATGTGTTTTGATAA-TCTCTTAGAAAACTAACAAGAACTCTGATTGTCCAATGTTTCCCCCATGTTTCTTAAGCATGGCTCTGAAGAGTCAGGAAAATTCTAACCAGTCTT---CTGCTAACTAGAACACAC---GGTCCTTTGGTTCTTAAAGTACGGGA-TCCTGGTGTTTGTCTCATTTGTGTG s rn3.chr10 22253162 204 - 110733352 --TAATAGAAAAACAGACACAAATGGTTTTTATTTGCATGGTTTTTGGTGA-TCTCTTAGGAAACTAACAAGAACTCCGATTCTCCAATGTTG--CCCACGTTTCTTCAGCATCTCACTGAAGAGTCAGGAAAATTCTT------------TTGCTAACTAGAACACAC---GGTCCTTTGGTTCTTAAAGTAGGGGAGTCCTGGTGTTTGTCTCATTTGTGTG s canFam1.chr9 14385079 206 + 53642819 ---AACAGTAATACACATACAGAAG-TTTTTATTGGAGTGGCTTTTGCTGATTTTTTTAGGAAAATAACAAAAACTCTGACTTTCCAAAGCTT--CCCAAGCTTCCTAAGCATAGCTATG----------AAAAGCCTAACTGGCCCTTCCCTGTAAACTGCAACACACACAAG-CCCTTGGTTTTTAAAGAAGGATA-TCCTGGTGTTTGTCTCATTTGTGTG a score=5338.0 s hg17.chr17_random 2596121 5 + 2618010 TACAA s panTro1.chr19 42864850 5 - 82489036 TACAA s mm5.chr11 22457824 5 - 121648857 TGCAA s rn3.chr10 22253366 5 - 110733352 TGCAA s canFam1.chr9 14385285 5 + 53642819 TACAA s danRer1.chr17 12064237 5 + 35757233 TATAA a score=133007.0 s hg17.chr17_random 2596126 110 + 2618010 --TCTCTTAATTCTAGATCTTGTGTACCAAGGCCG---------AGAATTCCAGACTGGTCTCGCAAATTGACAACACCAAACTGACTGCAGATGACTTGAGAGCCAAGTAAGCCCACCCA s panTro1.chr19 42864855 110 - 82489036 --TCTCTTAATTCTAGATCTTGTGTACCAAGGCCG---------AGAATTCCAGACTGGTCTTGCAAATTGACAACACCAAACTGACTGCAGATGACTTGAGAGCCAAGTAAGCCCACCTA s mm5.chr11 22457829 110 - 121648857 --TCTCTTAATTCTAGATCTTGTGTACCAAGGCTG---------AAAATTCCAGACTGGTCTCACAAATTGACAACACCAAACTGGCTGCAGATGACTTGAGAGCCAAGTAAGCCTGCCCA s rn3.chr10 22253371 110 - 110733352 --TCTCTTAATTCTAGATCTTGTGTACCAAGGCTG---------AAAATTCCAGACTGGTCTCACAAATTGACAACACCAAACTGGCTGCAGATGACTTGAGAGCCAAGTAAGCCTGCCCA s canFam1.chr9 14385290 110 + 53642819 --TTTCTTAATTCTAGATCTTGTGTACCAAGGCTG---------AGAATTCCAGACTGGTCTCACAAATTGACAACACCAAACTGGCTGCTGATGACTTGAGAGCCAAGTAAGCCCACCCA s galGal2.chr27_random 597079 110 + 721164 --TTTCCAACTGCCAGATCCTTGCAGCTACTATCG---------ACAACTCCAGGGTCGTTCTGGAGATTGACAACGCCAGGCTGGCTGCAGATGACTTCAGACTGAAGTAAGTTTGCCTG s danRer1.chr17 12064242 121 + 35757233 TTTCTTCAAATGCTTTGTTTTTCAGATTAAAAATGCAACCACGCACAACGCCAACATTCTCCTGCAGATCGACAACTCTAAACTGGCTGCTGATGACTTCAGGCTGAAGTAAGATCCCCAA a score=57416.0 s hg17.chr17_random 2596236 193 + 2618010 ACACCGTCATCAATGACAGAGCTCACCCTGAGTCTGAC-CGAGATGCCCTCAACAAAATTGTCCCCATGTCTACTAACCCTCTTGCCCCAGATGATGTTGGCACAAGCCCAG-AAAAGA----CTTTCAAATTCAATGAATGATTAAGATTAATAACTGCTCACATGTATACAG-TACCTATAGTTTCTAACTT---GTGAAc s panTro1.chr19 42864965 193 - 82489036 ACACCGTCATCAATGACAGAGCTCACCCTGAGTCTGAC-CGAGACGCCCTCAACAAAATTGTCCCCATGTCTACTAACCCTCTTGCCCCAGATGATGTTGGCACAAGCCCAG-AAAAGA----CTTTCAAATTCAATGAATGATTAAGATTAATAACTGCTCACATGTATACAG-TACCTATAGTTTCTAACTT---GTGaac s mm5.chr11 22457939 187 - 121648857 GCACTGTCACTGGTGATAGACTTCA-TCTGAGTCTGAT-TTAAATATTCCCAGGGAGACTGTCCCCACATGCACCAAGCCTCCCACTCCATAGCCTATCAAAAGTAACCCAG-AAAAGA----CCTTCAGATTCAATG--TGATTAAGATTAATAGCC-CTAACCTGCACACGG-CACCTCCGG--GATGACAA---AAGGAC s rn3.chr10 22253481 186 - 110733352 GCGCTGTCACTGGTGAAAGACTTCA-TCTGAGTCTGAT-TTAAATATTCCCAGGGAGACTGTCCCCACATGCACTAAGCCTCCTGTTCCATAGCCTATCAACAGTGACCCAG--AAATA----CCTTCAGATTCAATG--TGATTAAGGTTAATAGCC-CTAACCTGCACACAA-GGCCTCCGG--GATAATGT---AAGGAC s canFam1.chr9 14385400 194 + 53642819 GCACTGGCATTCACAACAGATTTCACCCTGCCTCTGACTCTGCACACTGCCATGAAGATTATTCCTAAATCTGCTAAACCTCCTGCTCCATACCATATTAGCACTAGTCCAGAAAAAAA----CTTTCATATTTGATAAATGATAAAGCTT-ATAACCACTCACATGTAAATAA-TCCTTGTAGTTTCTAACAT---ACGaac s galGal2.chr27_random 597189 156 + 721164 AAAC-------------------------ATATTTGTC-CTCTCTCTCCTT-------TTCTCCCTTTCTCAAACCAGCTTTCTG--AAGTGTTTTATTACTTCCCATCTAG-AAAATAAAGTTCTTCAG--CCACTGAAAGAT--------GTATTT-CCAAATTACAGACAGATGCTTTTCTTTAATAACTTCTAATGAAA a score=73097.0 s hg17.chr17_random 2596429 205 + 2618010 ccatttgattacctacacaatagttcagtaaaatagataggactaatatattgttactctctttaaggtgagaaatctgtggcttagtgaggctaagtta---ctcacccaaaggtaagcataactagcacaagtcaaaaccgaaacttggacacatgttttctgagccctaatccagtgctttcttcacttacattgcattgccact s panTro1.chr19 42865158 205 - 82489036 ccatttgattacctacacaatagttcagtaaaatagataggactaatatattgttaccctctttaaggtgagaaatctgtggcttagtgaggctaagtta---ctcacccaaaggtaagcataactagcacaagtcaaaaccgaaacttggacacacgttttctgagccctaatccagtgctttcttcacttacattgcattgccact s mm5.chr11 22458126 194 - 121648857 TCATATGATTGCCCCC---------TAGTGAGATAAGTAGGGTCAATGTCTTGTAACCTTGCTCCAGGCCAGAAAACCTTGATAAAATGAGAAAAAAAAAAACCTTACACTAAAGTGTGTGTGTGTGATACAAGTGAGAGCCAAAATGCAGACCCACACTTCCTGAGCCCAAACCCAATGGTTTT----CTTACACT-TGTTGCCTTT s rn3.chr10 22253667 187 - 110733352 CCATATGATTACCATC---------CAATGAGATAAGTAGGGTCAGTATCTTGTAACCTTGCTCTAGGCAGGAAAACCTTGGTAAAATGAGAAGAAA--A---CTTAGACTCAAGTGTGTACGG--GATACAAGAGAGAGCCAAAATGCTGACCCAAAATCCTTGAGCCCAAACCCAATGGTTTT----CTTACATT-TGTTGCCTCT s canFam1.chr9 14385594 201 + 53642819 ccatctgattacctgcacagtaattcaggaaaataggtagggccaatctgtagttaccttgtttaaggtgagaaaactctggtttaatgggattcagcta-----tatccgaagaca--tacaactaggacaagacacagctaaaacttggatgcaaattttctaactcctaatccactgctctttccacttccactgcattgctttt a score=31399.0 s hg17.chr17_random 2596634 69 + 2618010 AGGGGCAGAGGAAGGACAATAAATTCCCATATCTCAAAGAACAGCAATGTAG-ATCCCCCTAGCAAACTA s panTro1.chr19 42865363 69 - 82489036 AGGGGCAGAGGAAGGACAATAAATTCCCATATCTCAAAGGATAGCAATGTAG-ATCCCCCTAGCAAACTA s mm5.chr11 22458320 70 - 121648857 AGGAGCAAAGATGGGAAAATGAATTCCTTCATCTCAAAAGACACTAAGGTGGCATCGGGCAGGTGGACTA s rn3.chr10 22253854 70 - 110733352 CGGAGCAAAGGAAGGACAATTAATTCCCTCATCTCAAAAGACAGCAAGGTGGCATCATGCTGGCAGACTA s canFam1.chr9 14385795 70 + 53642819 GAGGGCAGGAGAAAGAGCATAAATTCCCTTATCTCAAAGACCAGCAATGTGGCCTCATGCTGGCAAACTG s galGal2.chr27_random 597345 63 + 721164 AATCGCTGGCCAAAAAAAATGA-------TATGACGAAGGATCAGAACACAGCAACCAGATTGCTGAGCT a score=13761.0 s hg17.chr17_random 2596703 148 + 2618010 ------ATTTGGGAATAATAATTAAGTTATGATCTATATCAAATGGTTTCACCTCCAAAG--AGAATAAAACT-----TCTAATA----GAAATAC--------ACTAAGTGAGGTGCCCA---GAGCAAAATGCAGATGAGAGTT-----CTG--CTTGGCTTGGTTTGCA-TCATCTCCTTT--------- s panTro1.chr19 42865432 147 - 82489036 ------ATTTGGGAATCATAATTAAGTTATGATCTATATCAAATGGTTTCACCTCCAAAG--AGAATAAAACT-----TCTAATA----GAAATAC--------ACTAAGTGAGGTGCCCA---GAGCAAAATGCAGATGAGAGTT-----CTG--CTTGGCTTGGTTTGCA-TCATCTCCTT---------- s mm5.chr11 22458390 134 - 121648857 ------ACTTAAGCCTAACAACCAAGTCATGAT---------ACAGTTTCACTGCTACAA--AGAATAACGTC-----TTCCATA----GAAACAC------------AGAGAGAGACCCA---GAGGACAAAGAAGCGGGAAGTT-----CTG--CCGAGCCCACCGTGTG--CATCTACATT--------- s rn3.chr10 22253924 135 - 110733352 ------ACTTAAGCCTAAGAACCAAGTAGTGAT---------ATGGTTTTACTGCTACAA--CGAATAATGTC-----TTC-ATA----GAAACAC--------AG--GGAGAGAGGCCCA---GAGCAAAAAGAAGCAGGAAGTT-----CTG--CTGAGCCTGCCTTGTG--CATCTACATT--------- s canFam1.chr9 14385865 147 + 53642819 ------ATTAAGGAATAAAAATTAAGTGGTTATTTTTATCAAATAATCTCACATCTAAAG--AGAATAAAACC-----CACAACA----GAAATAT--------AATAAATGAGAAAATAA---AAG-AAAATGTGGAAAGGAGTT-----CTG--CTTGGCTTGATTTACA-CCATCTATATT--------- s galGal2.chr27_random 597408 137 + 721164 ------GTTTATATAT-ATAAATAAATCACGTC---------TCAGTTTTTTTAGTGATG--CTCTTAAC-TA-----TTTAATAGCCTGAATCAC--------AGGCAAAAAGAAGACAG---GAA-------TAGTTTGGGTTT-----TTGACTTAAGGCTCCACTGCATTCAAACTCGTG--------- s danRer1.chr17 12065299 185 + 35757233 ATTTGTTTTTAGCACTGATAAA-AAGAAATGTTTCTGA----AGGTTCTTATGACTAAAGACAAAATGAAGCTGTGGATCTAATATATTAAAACATTGTCCTTAATTGAGAGAGTGCCTCATGCAGGCAATATAAGTAAAAGTGCTAATAACAG--TCAAATCTGTTTTTGA-ACATCAGTATGTGCACATTT a score=-10222.0 s hg17.chr17_random 2596851 14 + 2618010 ----------CAGATGTCT--CTCTT s panTro1.chr19 42865579 14 - 82489036 ----------CAGATGTCT--CTCTT s mm5.chr11 22458524 16 - 121648857 ----------CTAATGGCTTGTTCTT s rn3.chr10 22254059 16 - 110733352 ----------CTAATGCCTTGTTCTT s canFam1.chr9 14386012 6 + 53642819 ----------TTTGTt---------- s galGal2.chr27_random 597545 15 + 721164 ----------CAGATGCCA-ACACTT s fr1.chrUn 39364668 14 - 349519338 ----------CGGAGGCCTCGCCC-- s danRer1.chr17 12065484 19 + 35757233 GTCATGTTTACTAATTTAT------- a score=-10621.0 s hg17.chr17_random 2596865 11 + 2618010 TTCCC------ATCTGG s panTro1.chr19 42865593 11 - 82489036 TTCCC------ATCTGG s mm5.chr11 22458540 12 - 121648857 TCCCC-----TTTCTGG s rn3.chr10 22254075 13 - 110733352 AACCCA----TTTCTGA s canFam1.chr9 14386139 10 + 53642819 -----TT--ATGTCTCA s galGal2.chr27_random 597560 6 + 721164 ---------ATTTCT-- s danRer1.chr17 12065503 11 + 35757233 ------TTCCTATGTGA a score=228237.0 s hg17.chr17_random 2596876 170 + 2618010 TTTTTAAAGAT------ACGAAGCTGAGGTGTCTCTACGCCAGCTGGTAGAGTCAGATGCCAATGGCCTCAAGCAGATCCTGAATGTGCTGACCCTGGGCAAGGCCGACCTAGAGGCACAAGTCCAGTCTCTGAAAGAGGAGCTCCTTTGCCTCAAGAACAACCACAAAGAGGTGA s panTro1.chr19 42865604 170 - 82489036 TTTTTAAAGAT------ATGAAGCTGAGGTGTCTCTACGCCAGCTGGTAGAGTCAGATGCCAATGGCCTCAAGCAGATCCTGAATGTGCTGACCCTGGGCAAGGCCGACCTAGAGGCACAAGTCCAGTCTCTGAAAGAGGAGCTCCTTTGCCTCAAGAACAACCACAAAGAGGTGA s mm5.chr11 22458552 170 - 121648857 CATTTAAAGCT------ATGAAGCTGAGTTGTCCCTGCGCCAGCTTGTGGAAGCCGATGCCAATGGCCTGAAGCAGATCCTGGATGCACTCACTCTGAGCAAGGCTGACCTGGAGGCCCGAGTCCAGTCTCTGACGGAGGAACTTCTGTGCCTCAAAACGAACCATGAGGAAGTAA s rn3.chr10 22254088 170 - 110733352 CATTTAAAGCT------ATGAAGCTGAATTGTCCCTACGCCAGCTCGTGGAAGCCGACGCCAATGGCCTGAAGCAGATCCTGGATGCACTGACTCTGAGTAAGGCTGATCTGGAGGCTCGAGTCCAGTCTCTGACGGAGGAACTTCTGTGCCTCAAAACAAACCATGAGGAGGTAA s canFam1.chr9 14386149 170 + 53642819 TTTTTAAAGGT------ATGAAGCTGAGGTGTCTGTACGCCAGCTGGTGGAGGCTGATGCCAAAGGCCTACAGCAGATTCTGAATGCACTGACCCTGGCCAAGGCTGACCTGGAGGCACAAGTCCAGTCTCTGAGGGAGGAGCTCCTCTTCCTCAAAAACAAGCATGAAGAGGTTA s galGal2.chr27_random 597566 175 + 721164 -TTGTAAAACTGCAGGCATGAGAATGAGCTTTTCCTGCGCCAGAGCGTGGAGTCTGACATCAACGGGCTGCGCAGGGTGCTGGATGAGCTGACCCTGTCCAGGGCTGACCTGGAGATGCAGATCGAGAGCCTGAAGGAGGAGCTGGCCTACCTGAAGAAGAACCACGAGGAGGTGA s fr1.chrUn 39364682 170 - 349519338 GTCCCGCAGGT------TCGAGAACGAGCTCACCATGCGTCAGTCGGTGGAGGGCGACACCGCCGGGCTGAGGAGAGTCCTGGATGAGCTGACGCTGCAACGGACCGACTTGGAGATGCAGATCGAAGGTCTGCGGGAGGAGCTGGTCTTCCTGAAGAAGAACCACGAGGAGGTCG s danRer1.chrNA 32126563 170 - 390413307 TCTGTGCAGGT------ATGAGAATGAGCTGACCATGAGGCAGTCTGTGGAAGCAGACATTGTTGGCTTGAGGAAGGTGCTGGATGAGCTCACAATGACCAGATCTGACCTGGAGTTGCAGATCGAGGGTCTGAAAGAAGAACTGATCTTCCTCAAGAAGAACCACGAGGAGGTAA a score=-480.0 s hg17.chr17_random 2597046 1 + 2618010 G- s panTro1.chr19 42865774 1 - 82489036 G- s mm5.chr11 22458722 1 - 121648857 G- s rn3.chr10 22254258 1 - 110733352 G- s canFam1.chr9 14386319 1 + 53642819 G- s galGal2.chr27_random 597741 1 + 721164 G- s fr1.chrUn 39364852 2 - 349519338 GT a score=-2080.0 s hg17.chr17_random 2597047 20 + 2618010 --ACAAAGACCA--------ATAGA-----GTAAT s panTro1.chr19 42865775 20 - 82489036 --AGAAAGACCA--------ATAGA-----GTAAT s mm5.chr11 22458723 18 - 121648857 --AAAGAGACCA----------AGA-----ATCAG s rn3.chr10 22254259 18 - 110733352 --AAAAAGACCG----------AGA-----GTCAG s canFam1.chr9 14386320 17 + 53642819 --AGA---ACCA--------AGAGA-----GTCAT s galGal2.chr27_random 528823 29 + 721164 ------ATACCCCTCAGCCTAAAGAAATCCGTGGG s fr1.chrUn 39364854 20 - 349519338 ACAGAAACAGCA----------GCA-----GTGAT a score=12182.0 s hg17.chr17_random 2597067 29 + 2618010 CACAAGCTAAGTCCCTAAAAGTAGCATCA s panTro1.chr19 42865795 29 - 82489036 CACAAGCTAAGTCCCTAAAAGTAGCATCA s mm5.chr11 22458741 29 - 121648857 TACAGGCTGAACCCCGAAAATTAGCATTG s rn3.chr10 22254277 29 - 110733352 TACGGGCTGAACCCCTAACATTAGCATTG s canFam1.chr9 14386337 25 + 53642819 TACAAGC----CTCTAAAAAATAGCAACA s galGal2.chr27_random 528852 29 + 721164 AAGAAAGGAACTTCCCACAGGTGGGAACA a score=20337.0 s hg17.chr17_random 2597096 35 + 2618010 GTTCCTTTGAGTTGCACCTGACAAAGGGTGTGCCC s panTro1.chr19 42865824 35 - 82489036 GTTCCTTTGAGTTGCACCTGACAAAGGGTGTGCCC s mm5.chr11 22458770 35 - 121648857 GTTCCTTTGAGTTGTACATAGCAAAGTGTATTCCC s rn3.chr10 22254306 35 - 110733352 GTTCCTTTGGGTTGTGTATAGCGAAGTATATTCCC s canFam1.chr9 14386362 35 + 53642819 ATTCCTTTGGGCTGAATTTGGCAAAAGGTGTCTCC a score=884.0 s hg17.chr17_random 2597131 4 + 2618010 GCTt s panTro1.chr19 42865859 4 - 82489036 GCTt s canFam1.chr9 14386402 4 + 53642819 GTTT a score=34055.0 s hg17.chr17_random 2597135 365 + 2618010 gtattagttcgttctcacactgctataaagaaataactgagagtaggtaatttataaaggacagaagtgtaactgagtcacagttccacatggctggggaggcctcaggaaacttacaatcatggcttaaggggaagcaggcacatctcacttggcagcaggagacagagagagaccaaagggggaagagccctttataaaactatcagatcttgtgagaactcactcactatcctaagaacagcatgggggacaccacccccatgatccaatctcctcccactaggtccctcccttgacacatgggaattatgggaattacaattcgagatgagatttgggtggggacacagagccaaaccaCT s panTro1.chr19 42865863 365 - 82489036 gtattagtttgttctcacactgctataaagaaataactgagagtaggtaatttataaaggaaagaagtgtaactgagtcacagttccacatggctggggaggcctcaggaaacttacaatcatggcttaaggggaagcaggcacatctcacttggcaacaggagacagagagagaccaaagggggaagagccctttataaaactatcagatcttgtgagaactcactcactatcctaagaacagcatgggggacaccacccccatgatccaatcacctcccactaggtccctcccttgacacatgggaattatgggaattacaattcgagatgagatttgggtggggacacagagccaaaccaCT a score=611.0 s hg17.chr17_random 2597500 3 + 2618010 GCT s panTro1.chr19 42866228 3 - 82489036 GCT s mm5.chr11 22458805 3 - 121648857 ACT a score=322.0 s hg17.chr17_random 2597503 14 + 2618010 ---ACGTACTACTCTGG s panTro1.chr19 42866231 14 - 82489036 ---ACGTACTACTCTGG s mm5.chr11 22458808 13 - 121648857 ---AGGCACTTCGCCA- s rn3.chr10 22254341 16 - 110733352 ACAAGACGCTTTGCCA- a score=167406.0 s hg17.chr17_random 2597517 536 + 2618010 TTTAGCCCTGAAAATACCTACTGCTACTAGCACTGGTTCAAGGTAGTATTTCAAATCCACTGGCTCCAACACAATATCTGGAGCCATAAGGGGAAGAAAGGCCTCCAACATCCCCTCCAGCTTTT-CTACAAGAAGGAACCCAATTTTTCTGTCCTTACAGTCTTCCCATGTT------TGTAGGCATCCCTATACAGGCTTCTGCCACCTCCCATTGGTACAAGTCAATATTGGTGCAAGTCAATATTGGCACAATCCCGTATTTGCACCATAGAGACTATAA-----TCTCTCATGATCAATTCCACCTTTAT--CCTGTTTCACCCATTATCCAGCCCTGGAAATGATC-TAAATTTTTTGGAACTCTG-------------GTCTTGCTACTC--------------ATTTTTTTTTAATTTTGCACACATTTAAACACACAGTCCTACCTGAAAGAGTCTTAAATCATTTTATAGCATCTCAATAACACCTGTAAATCATGTATTCCTTTGTTGTGGGCTATATTTTAGACACAATTAAGCTAAATCGTAGCAGTTAGAGTGAAACAAGAACA s panTro1.chr19 42866245 535 - 82489036 TTTAGCCCTGAAAATACCTACTGCTACTAGCACTGGTTCAAGGTAGTATTTCAAATCCACTGGCTCCAACACAATATCTGGAGCCATAAGGGGAAGAAAGGCCTCCAACATCCCCTCCAGCTTTT-CTACAAGAAGGAACCCAATTTTTCTGTCCTTACAGTCTTCCCATGTT------TGTAGGCATCCCTACACAGGCTTCTGCCACCTCCCATTGGTACAAGTCAATATTGGTGCAAGTCAATATTGGCACAATCCCGTATTTGCACCATAGAGACTATAA-----TCTCTCATGATCAATTCCACCTTTAT--CCTGTTTCACCCATTATCCAGCCCTGGAAATGATC-TAAATTTTTTGGAACTCTG-------------GTCTTGCTACTC--------------ATTTTTTTT-AATTTTGCACACATTTAAACACACAGTCCTACCTGAAAGAGTCTTAAATCATTTTATAGCATCTCAATAACACCTGTAAATCATGTATTCCTTTGTTGTGGGCTATATTTTAGACACAATTAAGCTAAATCGTAGCAGTTAGAGTGAAACAAGAACA s mm5.chr11 22458821 476 - 121648857 --TAGCTCTGGTCATACT-----------GCAACCGCCCA---TACTATGTT--ATTTACT-------ATGTAACACCTAATGCCATATTAGGTACGATAATCTCCATGGTCC---------------------------------------------CAGTTTTGTCATATTCATTGGTATAGACATCCTGGAACAGA-TTCTGCCACATCCTAATGGGAAAAAAAAA---------AAGCCAATTCTGGCATGAGCTCATATGAGCAGCCTAGAGATGGTAGGTAGTCTTTCCATAA--AATCCCACTTCTGTGATCTGCCT---CCATTTTTTCATTCTATAAATGGTC-TTAAAATTTCTGAATTTTGATACTGTCAGTCAATATTGTTAGTC--------------ATTCCCTCTTCTTTTCCCACAAGTTCGAGCACAC--CCATACCTGAAATCACCTTCAGTCACCATAGGGCATCCCAATAACACCTACAAGTCATGTGCCCCTCTGTTGTGTACTGTATTCCAGACACAATTAAACTAAATTATTTCTGTAATATTGAAACAAGAACT s rn3.chr10 22254357 470 - 110733352 --TAGCTCTGGTCATACT-----------GCTACGGCCCA---TACTATGTT--ATTTACC-------GTATTATATCTAATGACATG-TGGGTAGGATATTCTTCATTGTCC----------------------------CAATTTTCTCATCTTCAATGGTTT--------------TATAGACATCCTTGAACAGA-TTCTGCCACATCCTAATAGAAAAA--------------AAGCCAATTCTGGCACGAGCTCATATGAGCAGCCTAGAGATGGTGG----TCTTTCCATAA--AACCCCACCTCGGTGATCTGCGT---CCATTTTTCATTCCTATGAATGGTCTTAAAATTTCTGGAAATCTG-------------ATACTGTTAGTCCACATCATTAGTCAATTCTCTCTTCTTTTTACACATGTTCAAGCACAG--CCATACCTGAAATCACCTTCGGCCACCATAGGGCATCCCAATAACACCTACAAGTCATGCAGCCCTCTGTTGTGTGCTGTATTCCAGACCCAATGACACTAAATT-TTTCTGTTAGATCAAAACAAGAACG s canFam1.chr9 14386406 492 + 53642819 TTCAGCCCTGACAATACCTACTGCTACCACCACTGGTTCA---ATGTGTTTCAAATCCATC-ACCAAAACACAATATCTGAAGC------------------CTCCTTTGCCCTCTCCAGCTTTTACAAAAGGAAACAACCCAATTTTCCTGTCCTCACAAATGTCCCATCTTTT----TGTAGGCATCCCTACACAGACTTCTACCAC--------------------TATTGTTCGAAGTCCATATTGGCAAAAGCCCATATTTTTGTCTTAGAGACTATGG-----TCTCTTACTATAAATTCCACCTCTCT--GCTGCTTCA-CCATTACCCATTCCTGGAAATGGTC-TAAATTCCTTACGACTCTG-------------ATCTTGCTAATT--------------AATTCCTTTTAATGTTTCACGTATTTGAATAGAG--TCATATCTGAAATAGCTTTAAGTCATTTTATAGCATCTCAATGGCACCTATAAATCATCTATTCCTTTATTGTGAGCTATATTTCAGATACGATTAAGCTAAATTATTGCTATTAGAC--AAACAAGAATA a score=13889.0 s hg17.chr17_random 2598053 39 + 2618010 CA-----AAGGGGTTATCTGTTCACCAAGTGACTTCACAGTCTT s panTro1.chr19 42866780 39 - 82489036 CA-----AAGGGGTTATCTGTTCACCAAGTGACTTCACAGTCTT s mm5.chr11 22459297 44 - 121648857 CAGTAGGGAATGGTCATCTGTTCACTAAACCACTTCACATTCTT s rn3.chr10 22254827 43 - 110733352 TGGCAGGGAATGGTCATCCATTTACTAAAGAACTTCACATTCT- s canFam1.chr9 14386898 39 + 53642819 CA-----AGAGTGTCATCTGTCCAATAAGTGACTTCACATTCTT s fr1.chrUn 253387550 38 + 349519338 CA-----AGGAGCTTGTTTCCTCACGTAAAGCTGACTCGTCTC- a score=3863.0 s hg17.chr17_random 2598092 11 + 2618010 TTTCTTTCCTT s panTro1.chr19 42866819 11 - 82489036 TTTCTTTCCTT s mm5.chr11 22459341 11 - 121648857 TCCTTTTCCAC s rn3.chr10 22254870 7 - 110733352 ----TTTCTAC s canFam1.chr9 14386937 11 + 53642819 TTTCTTTCAAT s galGal2.chr27_random 528887 11 + 721164 TCCCTGTCTGC s fr1.chrUn 253387588 10 + 349519338 -TCTCGCTCAT a score=19281.0 s hg17.chr17_random 2598103 22 + 2618010 AGGAAATCAATTCTTTACAGTG s panTro1.chr19 42866830 22 - 82489036 AGGAAATCAATTCTTTACAGTG s mm5.chr11 22459352 22 - 121648857 AGGAAGTTAATTCCTTACAGTG s rn3.chr10 22254877 22 - 110733352 AGGAAATTAATTCCTTACAGTG s canFam1.chr9 14386948 22 + 53642819 AGGAAATCAACTCCTTACAGAG s galGal2.chr27_random 528898 22 + 721164 AGGAAATGAGCTGCCTGAGGAA s fr1.chrUn 253387598 22 + 349519338 GGTCGTTTAGGAGCTGATAGCG s danRer1.chr17 12065870 22 + 35757233 AGGAGATGGCTGCACTGAGGTG a score=284648.0 s hg17.chr17_random 2598125 392 + 2618010 TCAGCTTGGGGAGAGACTTGACATTGAAGTGACTGCTGCCCCTTCTGCTGACCTAAACCAGGTTCTACAAGAAATGAGATGTCAATATGAGCCCATCATGGAGACAAACCGCAAAGATGTGGAACAGTGGTTCAACACGCAGGT------------------------------------GGGGGATAT-----------AGAAAAGTCAAAAA---CAATAAGCTGATG-------------CTGCATTTCTA-------GGGCCCTTTAATCAAAGTCATG-----------------TTTTCCTCCCATAATATTC-TCAGTCTCTGGCTGTGTGTTTCAGATAGAGGAGCTGAATCAACAAGTGGTGACCAGCTCTCAACAGCAGCAATGCTGCCAAAAGGAGATCATAGAACTGAGACGCAGTGTGAACACTCTGGAGGTTGAACTGCAGGCCCAGCATCGAATGGTACTGAGCA s panTro1.chr19 42866852 392 - 82489036 TCAGCTTGGGGAGAGACTTGACATTGAAGTGACTGCTGCCCCTTCTGCTGACCTAAACCAGGTTCTACAAGAAATGAGATGTCAATATGAGTCCATCATGGAGACAAACCGCAAAGATGTGGAACAGTGGTTCAACACGCAGGT------------------------------------GGGGGATAT-----------AGAAAAGTCAAAAA---CAATAAGCTGATG-------------CTGCATTTCTA-------GGGCCCTTTAATCAAAGTCATG-----------------TTTTCCTCCCATAATATTC-TCAGTCTCTGGCTGTGTGTTTCAGATAGAGGAGCTGAATCAACAAGTGGTGACCAGCTCTCAACAGCAGCAATGCTGCCAAAAGGAGATCATAGAACTGAGACGCAGTGTGAACACTCTGGAGGTTGAACTGCAGGCCCAGCATCGAATGGTACTGAGCA s mm5.chr11 22459374 383 - 121648857 CCAACTAGGGGACAGAATCAACATTGAAGTAACAGCTGCCCCTTCTGTTGACCTAAATCAAATCCTACAAGAAATGAGATGCCGGTACGAGTCCATCATGGAGACAAACCGTAAAGACGTAGAAGAATGGTTCAATACACAGGT------------------------------------TGGGAGAGC-----------CAACAAGTCAAAAAAATCCATAAGCT-----------------CCATATGTCTAC------GAGTCCTTAGAT--ATGTTATG------------------CTTCCTTGCAAATTACCT-GGAATCTC------TGTGTTTCAGATGGAGGAACTGAATCAACAAGTAGTGAGCAGCTCTCAGCAGCAGCAATGCTGCCAGAAGGACATCATAGAGCTGAGACGGACCATAAGTGCCCTCGAGATTGAGCTGCAGGCCCAGCACAGAATGGTACCCAACA s rn3.chr10 22254899 381 - 110733352 CCAACTTGGGGACAGAATCAACATTGAAGTAACAGCTGCCCCTTCTGTTGATCTAAATCAAATCCTACAAAAAATGAGATGCCAGTATGAGTCCATTGTGGAGACAAACCGTAAAGACGTAGAAGAATGGTTCAATACACAGGT------------------------------------GGGGAGAAT-----------CAGCAAGTCAAAAA--TCAATAAATT-----------------ACATATCTCTAG------GAGTCCTCCTAT--ACATGATG------------------CTTCCTTGCAAAGTACCT-GGAATCTC------TGTGTTTCAGATGGAGGAACTGAATCAACAGGTAGTGAGCAGCTCTCAACAGCAGCAATGCTGCCAGAAGGACATCATAGAGCTGAGACGGACCATAAGTGCCCTCGAGGTTGAGCTGCAGGCCCAGCATCGAATGGTACCCAACA s canFam1.chr9 14386970 390 + 53642819 CCAGCTTGGGGACAGACTCAACATTGAAGTGACTGCTGCCCCTTCTGTTGACCTAAACAGGGTTCTACAAGAAATGAGATGTCAGTATGAGTCCATCATGGAGACAAATCGCAGAGAAGTGGAACAGTGGTTCAACACACAGGT------------------------------------GGGGAGGGT-----------AAAAAAGCCCAAAA---CAAAAAGTTGACA-------------TTGCATTTCCAG------GTGACCTTTAATCAAAGTCATG------------------TTTTCTTTCATAATATTC-ATGGTCTTTAAC--CATGTTTCAGATGGAGGCACTGAACCAGCAGGTGGTGACCAGCTCTCAACAGCAGCAGTGCTGCCTGAAGGAGATCACTGAACTGAGACGTACCATGAATGCTCTGGAGATTGAACTGCAGGCCCAGCACCGAATGGTACCCAGAA s galGal2.chr27_random 598172 398 + 721164 TCAGCTCAGCGGAAAAGTCAGTGTGGAAATGGATGCTGCTCCTGGCATCGATCTGACAAGGATCCTCTCGGAGATGAGGGAGCAGTACGAGGCTCTGGCTGAGAAGTACCGTAAGGACGCTGAGGCATGGTTCCTCACCCAGGT-------------------------------------------AT-----------GGTTATGTCAGCAA--CCATCAACCTGATGCACTGCCCCATCACTGCTTCTGCAGCAGGACGGATAAGCTTAC--AGTTTAT-------------------TTTTCATGCATTTAATTCTGCAGTTGCTTT---TTTCTTTCAGACTACTGAGCTGAACCATGAAGTTGCCACCCACACTGAGCAGATACAGAGCAGCAAATCGGAGATCACAGAACTGAGACGCACGATGCAGAGCCTGGAGATCGAGCTGCAGTCACAGATAAGCATGGTATGGAG-- s fr1.chrUn 253387628 378 + 349519338 TCAGCTTACTGGCACTATCAACGTGGAGGTGGACGCCAAACCCCAGCAAGACCTCAACAGAATCCTGGATGAGATCCGCTCCCAATACGAGAACATCTGCGACAAACACCGCCGTGAGCAGGAGGCCTGGTTTAATGAGCAGGT--------------------------------------------------------ACACAAGCCCACAT---TAAATTACTGGAA-------------TTATATCT----------AGAGACTTTAATTAAACCTACATGA------------GCTCTTCTTTATAAA----TC-TGACTTTTTAT---CCCACTGTAGTCGACAGTCTTGAGCAAAGAGGTGGCCATAAGCACAGAAACCCTCCAGACGTCCAAGACAGAGATCACTGACCTGCGGCGCACACTCCAGGGCCTGGAGATTGAACTCCAGTCTCAGCTCAGCATGGTGAGAAACA s danRer1.chr17 12065892 440 + 35757233 TCAGCTGACAGGCACGGTGAACGTCGAGGTCGATGCTGCTCCTCAACAAGATCTGAACAAGGTTCTGGAGGAGATTCGTACTCATTACGAGAACATTATTCAGAAACACCGCAGGGAACAGGAAGCCTGGTTTAAAGACAAGGTAAGACTTCTGATTGCTCTCTTGAATCCCATGTTTGTGAATGGCATCTTAGTGCATGGTAGCAGTCAGATT---TACTAAATT-----------------CAATTTTACTCA------AATGTAACTAAA--ATGTTATGCGATTATTACACCTGATTTCCCCATATGCAATGCTT-TTA-----------TCTGTTTTAGACGGCACCATTGAACAAAGAGGTGGCTCACAGTACAGAGACCATCCAAACATCCAGGTCACAGATCACAGAGCTGCGAAACACATTGCAGAGTTTGGAGATCGAGCTACAGTCTCAGCTCAGCATGGTGAGACACA a score=1090.0 s hg17.chr17_random 2598517 2 + 2618010 AG s panTro1.chr19 42867244 2 - 82489036 AG s mm5.chr11 22459757 2 - 121648857 GG s rn3.chr10 22255280 2 - 110733352 GG s canFam1.chr9 14387360 2 + 53642819 TG s danRer1.chr17 12066332 2 + 35757233 AG a score=30473.0 s hg17.chr17_random 2598519 65 + 2618010 CTGACCAAGCCTAGCTCAGCAAAGA----TGGAAACAGTCCCTTACACCTGTGTGCTGCAGTATTTCCC s panTro1.chr19 42867246 65 - 82489036 CTGACCAAGCCTAGCTCAGCAAAGA----TGGAAACAGTCCCTTACACCTGTGTGTTGCAGTATTTCCC s mm5.chr11 22459759 65 - 121648857 ATGACCAAGCCTAACCTTACACCGG----TGGCAACAGTCCCCGGTGACTGAGTGTTACGCTATTTCCC s rn3.chr10 22255282 64 - 110733352 CTGACCAAGCCTAACCTTACACTGG----TGGCGACAGTCCC-GATATCTGAGGGTTACGCTGTTTCCC s canFam1.chr9 14387362 61 + 53642819 ----CAATGCCTAACACAGCTGTGA----TGGCAATAGCCCTTGACAACTGCATGTTGCAATGTTTCCC s galGal2.chr27_random 598570 65 + 721164 ----CTGTGCCCAGCACAGCACGCGCCATTGCCAGAAGCCTCCCCCACCCCCCTCCTCCCTTGGTTCCC a score=350660.0 s hg17.chr17_random 2598584 819 + 2618010 AAACTGTGTCTTTCAGAACAATAGTTCCTC-ATTTGTTAAAGCGTCTATGGCTGAAAAAGagctttgtggccaaataagtctacgaaacgctgcactaaaccaaggttaaacagggtgccttcctgtgagcca-ttaataagctaatatacaccatgaatctccaggaagggggtatatggtattcagcattccaaaacttatttgactgtggaTCCCCCCACTTTTTT---TAGAACATCTCATGGTATTAATGATTCATGAAGTACACTTTGGGAAACACTGGGAgagcat----tttattatatgcaaagcatttttacaagctatcacatgagatttataaagca--atcctaagagggggggtggcataattattaa-cgaatgttacagatgaggctccaagagctaaagtgattttcccaag-caaatccaaggtaagtttcagcccacctatttt------atagagacactgagatcctgagacattaagaaactcatccaaagtcacaaaagaaataagagtctgagccagagtttagattccaaagccagtatca-ttctgtctcatgataatgcctctctgAAGTAGAGAATTGCTTACATGCTCTGATGTGA----------------------------Aggcttttgggaagaccttgccccaca-ctggttttgtcaccagctagtcatgtgaccttggacaacatattgaaccacttgaacctcagttttctcatctataaaaattgggataatcatgcAAATAAT--AGGCTATTAAAACCTAAAATCCCATCATTATCcatagacttacagaatgatagagcaggaatgaaatttactcat--cagtttcaac s panTro1.chr19 42867311 819 - 82489036 AAACTGTGTCTTTCAGAACAATAGTTCCTC-ATTTGTTAAAGCGTCTATGGCTGAAAAAGagctttgtggccaaataagtctacgaaatgctggactaaaccaaggttaaacagggtgccttcctgtgagcca-ttaataagctaatatacaccatgaatctccaagaagggggtatgtggtattcagcattccaaaacttatttgactgtggaTCCCCCCACTTTTTT---TAGAACATCTCATGGTATTAATGATTCATGAAGTACACTTTGGGAAACACTGGGAGAGCAT----TTTATTATATGCAAAGCACTTTTACAAGCTATCACATGAGATTTATAAAGCA--ATCCTAAGAGGGGGGGTGGCATAATTATTAA-CGAATGTTACAGATGAGGCTCCAAGAGCTAAAGtgattttcccaag-caaatccaaggtaagtttcagcccacctatttt------atagagacactgagatcctgagacattaagaaactcatccaaagtcacaaaagaaataagagtctgagccagagtttagattccaaagccagtatca-ttctgtctcatgataatgcctctctgAAGTAGAGAATTGCTTACATGCTCTGATGTGA----------------------------AGGCTTTTGGGAAGACCTTGCCCCACA-ctggttttgtcaccagctagtcatgtgaccttggacaacatattgaaccacttgaacctcagttttctcatctataaaaattgggataatcatgcAAATAAT--AGGCGATTAAAACCTAAAATCCCATCATTATCcatagacttacagaatgatagagcaggaatgaaatttactcat--cagtttcaac s mm5.chr11 22459824 809 - 121648857 AAACTGTGTCT--------------------ATTAGTTAAAGGGTCTGTGACTAGAAAAGAACTTCATGGTCAAGTAAGTCTTGGAAATGTTGGATTTCACAAAGGCTA--------GCCTTTCTGCAAGCTAGCCTACAAAGTGGCATGTGCCATGGATCTCC---AAGGAGGTGTGCAGGACTCAGCATTCCAAAACTTATTTGATTATGGGTGCTTTCCCTCTCCTCCCCAGAGTATGTCACAGTGACCATGACCCATGGAAAACACTTTTGGAATCACCAGGAAAGCATTAGATTTCTCTTATGCAAAGCATTATCGTAAACTCTCATATTGGGATTATGACACAACATTCTGAAAGAGGTGAC-GTAAAACCATTCA-CCAACTTTACTGATGACATTCTAAGAACCAGGGTGGTTTTCCCAAGCCAGAACCACAATACAAGCCATCACACCCTACTCACAG--ATGGAGACACTGAGGTCCCAAAGCTATGAGTGACCTTCCCAAAGTCACCAAAGGAA--------TGAGTCAG-GATCGGATCCCACTGCCAGCATC---TCTGCTTCTTGAGACTGCGACTCAGAAATAAGACAGTACTCAAAAGTCCTGCTAGGAGCGGCAAGCATGTCCTGCTCGGAGCGGCAGGCATTAGCAAAACCCT--CCCCA-----GGTTACATCAGCTGCTACTCATGAGATGTTGGGC---------AATTCCCTGAACCTCATTTTTCTCATCTGTAAAAGTTGAGATAACCCCGTGAATAACCAAGGTTATTAAAACCTAAAACCCCGCCATTATCTGTAGACTTACAAAATGATAGAACAAGAAAGAACTTGACCCATTCCAGTTTCAAC s rn3.chr10 22255346 776 - 110733352 AAACTGTGTCT--------------------ATTGGTTAAAGGGTCTGTGGCTAGAAAAGAACTTCATAGTCAAGTAAGTCTTGGAAATGTTGGATTCCACAAAGGTTA--------GCCTTTCCACAAGCTAGCCTACGAAATGGCATGTACCATGGATCTCC---AAGGAGGCGTGCAGTACTCAGCATTCCAAAATTTATTTGATTATGGATGCTTTTCCCCCTCCTCCCAAACTATGTCACATTGAGCATGACCCATGGAAAATAGTTTTGGAATCACCTGGAAAGCATTAGAGTTCTCTTATGCAAAGCATTATTGTAAATTCTCATATTGGGATTATGAAAAA--GTTCTGAAAGGTGATGT----GAACCATTAT-CTAACTTTACTGGTGACATTCTAAGAACCAGGGTGGTTTTTCCAAGCAAGATCCACACTAAGAGCCATCACAGCCTGTTCACAG--ATGGAGACACTGAGATCCCAAAGGTGTGAGTGACCTTCCCAAAGACACCAAAGAAA--------TGTGTCAG-GATCAGATCCCATAGCCAGCACCACCTCTGCTTCTTGAGACCACATCTCAGAAATAAGACAGTACTCAAGTGTCCTGCTAGGA-----------------------GAGGCAGGCATT-------AGCT---GCCA-----GGTTTCATCAGCTTCTACTCACGGGATGTTGAGC---------AACTCACTGAACCTCATTTTTCTCACCTATAAAAGTTGAGATAACCATGTGGATAACCGAGGTTATTAAAACCTAAAATCCCACCATTATCATTAGACTTACAAAACAATAGAACAAGAAAGAACTTGACCCATTCCAGTTTCAAC s canFam1.chr9 14387423 810 + 53642819 AAATTGTGTGCCTCCGA-----AGTTCCTCTGTTTGCTGAAAGGTCTATGCCCAAAAAAGGCc--cgtggtcaaataagcctgggaaatgctggaataaacataggttaaatggggtaccttcctataggcct-ttaataagctaatatacactatggatctccaagaaggagatatatggtattcagcattcc-aaacttatttgactgtggaTCCCTTCCTTT-------AAAAGCATCTCATGGCAATAATGATCCATGGAGTACACTTTGGGAAACAGTAAGAGAGCTT----TTTATTACATGCATAATAGTTTTACAAACTATCAAAT-----TTATAAAAAT--AATCTTATAAAGGAGGTGGCATAATTATTAAGCAAATTTTACAGATGAGGCTCAGGGAGCAAATGTGATTttcccacactaaatcccaggtgagttccatcttgcctattttatagcaatggagacactgaggtcctgaggcattaagtaacttgttaaaagtcacaaaagaaa--tgaatctgagccagaattcaggttccaaagttggaaccacttctgcttcattgtactgtctctATAAAGTAGGGAATTATTTAAATGCTCTGATATGA----------------------------AGAGTATTTggaagaccctgccccaaagctagctttgtcaccaattagtcatatgaccatgggcaactcatttaaccccttgaacctcagttttctcctctctaaatgttgggaaaaccatgcAAATAAT--AGATTATTCAAGCCAAAGATTC---CATTATCCCTAGGCTTATAGAATGATGGAGCAGGAAAGAACTCTAACCATCAAAATTTCAAC a score=-243.0 s hg17.chr17_random 2599403 2 + 2618010 tt s panTro1.chr19 42868130 2 - 82489036 tt s mm5.chr11 22460633 2 - 121648857 AC s rn3.chr10 22256122 2 - 110733352 AC a score=47609.0 s hg17.chr17_random 2599405 105 + 2618010 tcatattttacatataaaggaattgaTCTGGTGGATAAATTGTATATGGTAAAACATTGCTTCCTTCCTTTTTTAAGACACGAACACTCACTGAATGAAGTGCCA s panTro1.chr19 42868132 105 - 82489036 tcatattttacatataaaggaattgaTCTGGTGGATAAATTGTATATGGTAAAACATTGCTTGCTTCCTTTTTTAAGACACGAACACTCACTGAATGAAGTGCCA s mm5.chr11 22460635 104 - 121648857 TCATATTTTACTTATAAAGGAATTGACACACTGAGGCAAATGATTCTAGTTAAACATTGCTCACTTCC-TTTCAAAGGCTCAAACGCAGGCTGAATGAGGTGTCC s rn3.chr10 22256124 104 - 110733352 TGGTGTTTTACTTATAAAGGAACTGACACACTGAGGGAAATGCTTCTAGTTAAACATTGCTCACTTCC-TTTCAAAGGCTCAAACGCAGGCTGAATAAGATGTCC s canFam1.chr9 14388444 104 + 53642819 TTGTGTCTTAGATATAAAGGAATGGATTGAGTAAGAGAATTCTTTATGGCTAAATGCTGCTAACTTCT-TCGCTAAGGTACAAATATTCATAGAATGAGATGCCA a score=2838.0 s hg17.chr17_random 2599510 5 + 2618010 TGGTA s panTro1.chr19 42868237 5 - 82489036 TGGTA s mm5.chr11 22460739 5 - 121648857 TGGTA s rn3.chr10 22256228 5 - 110733352 TGGTA a score=28135.0 s hg17.chr17_random 2599515 304 + 2618010 ATGCttttttttttttttctttttgagatggagtctcactctgtcgcccagactggacagcagtggcacgatctcgggtcactgcaacctccacctcccgggttcaagcaattctctgccttagcctcccaagtagctgggattacaggtgcccaccagaacacccagctaattttttgtatttttagtagagacggggtttcaccatcttggccaggctggtcttgaactcctgaccttgtgatccacccacctgggcctcccaaagtgctgggattataggcgtgagccactgcgcccagcc s panTro1.chr19 42868242 303 - 82489036 ATGCttttttttttttt-ctttttgagatggagtctcactctgtcgcccagactggacagcagtggcacgatctcgggtcactgcaacctccacctcccgggttcaagcaattctctgccttagcctcccaagtagctgggattacaggtgcccaccacaacacccagctaattttttgtatttttagtagagacggggtttcaccatcttggccaggctggtcttgaactcctgaccttgtgatccacccaccttggcctcccaaagtgctgggattataggcgtgagccactgcgcccagcc a score=1009.0 s hg17.chr17_random 2599819 7 + 2618010 AGTAATG s panTro1.chr19 42868545 7 - 82489036 AGTAATG s canFam1.chr9 14388549 7 + 53642819 ACTAACA a score=91614.0 s hg17.chr17_random 2599826 305 + 2618010 CATTTTTAATGCCTGGGTGTGCATTAAGTT--------ATTATTTTTTCTCTCCTAAGT---AGGAAAGTGTGGTGCGAGACT-ATTGG--TTGGTCaagaaagagaaagtgaaacaaatacttacagagaagcaaaaagagaaagagagaaagagggaagagataaaggaaagCAGATTTTAGCATAGTTGATCATTTGGGTTTTGGATTTATTTGATTAGGAAACAATAAATAAAGTGCTTGGAGATCTATCAGTA-GTGTCACAAAGAAACCATTTTTTTTAAATGATACAGGTCACAGGTGACCT------GGGCTTAAAGG s panTro1.chr19 42868552 305 - 82489036 CATTTTTAATGCCTGGGTGTGCATTAAGTT--------ATTATTTTTTCTCTCCTAAGT---AGGAAAGTGTGGTGCGAGATT-ATTGG--TTGGTCaagaaagagaaagtgaaacaaatacttacagagaagcaaaaagagaaagagagaaagagggaagagataaaggaaagCAGATTTTAGCATAGTTGATCATTTGGGTTTTGGATTTATTTGATTAGGAAACAATAAATAAAGTTCTTGGAGATCTATCAGTA-GTGTCACAAAGAAACCATTTTTTTTAAATGATACAGGTCACAGGTGACCT------GGGCTTAAAGG s mm5.chr11 22460744 271 - 121648857 TGATTTTAATGCCTGAGCCTTCAGTGAAGTGAGGTGGGGGTTTTTTCTCTCTCATGAGCCAGAGGAAAA--------GAGACTAAGTGGTTTTAAAAAAAAAAGACAAAGAGAAATAAAC-----CAGAGAGATAGGAA---------------AGAGAAGGGATAAAGGAAAGCAAACATT--------------TTTG---TTTGGATTTATTTGGTTAGGAAGTAATAAAGGA----CTTAGAGAACCCTTAGTA-CTGTCACAGAGAAGCTA-TCGTTTAAAATGGCTTTAACC----GTGACCTTCTGGGAAGTTTAAAGG s rn3.chr10 22256233 270 - 110733352 TGATTTTAATTCCTGAGCCTTCAATGAAGTGAGGTGGATTTTTTTCCTCTTTCATGAACCAGAGACTAA--------GAGAATAAGTGG--TTA---AAAAAAAAGACAGAGAAATAAAC-----CAGAGAGATAAAAA---------------AAAGAAGGAATAAAGGTAAACAAACATC-------------ATTTTTGTTTTGGGTTTATTTGGTTAGGAAGTAATAAAGGA----CTTAGAGAACTCTTAGTA-CTGTCACAGAGAAGTTA-TTGTTTAAAATGTCTTTTACA----ATGGCCTTCTGGGAATTTTAAAGG s canFam1.chr9 14388556 285 + 53642819 GGTTCTTAAAGCCCAGGTGTGAAATAAGTT-----GGAATATTTTTTTGTCTCACAGAT---AG--AAGTGTGGTAGCATATT-ATCAA--GTG------AATAATAAAGAGAAGTAAATACTTAAAGGGAGGCAAAAATAA------------ATAAAGAGGATAAAAGGAAGTGAGCTTTAGCATAGTAGATAATTTTTGTTTTGGATTTATTTGGTTAGGAAGTAATAAGAGG---GTTTGGAGACTCATTAGTACCTGTCACAAAGAAACCA-TTGTTTAAAATGATTCATTTCACACATGACCT------AGGCTCCAAGA a score=862.0 s hg17.chr17_random 2600131 12 + 2618010 -AGTCAT---TATAAA s panTro1.chr19 42868857 15 - 82489036 -AGTCATCATTATAAA s mm5.chr11 22461015 10 - 121648857 -AGTCAT-----TAGA s rn3.chr10 22256503 12 - 110733352 -AGTCAT---CTTAGA s canFam1.chr9 14388841 15 + 53642819 -GGTCATCATTGTAAG s danRer1.chrNA 32127264 12 - 390413307 AGTTTAT---ACTAA- a score=91.0 s hg17.chr17_random 2600142 1 + 2618010 A s fr1.chrUn 253388494 1 + 349519338 A a score=278735.0 s hg17.chr17_random 2600143 251 + 2618010 TCCTACTATCCTTCTCCAT----GGTAGAGAGATTCCCAAGAGTGCATCCTAACGGAGACAGAGGCTCGCTACACGGCCTTGCTGAC----CCAGATCCAGAGTCTGATTGATAACCTGGAAGCTCAGCTGGCAGAGATCCGGTGTGCCCTGGAAAGACAGAACCAAGAATACGAGATCCTGCTGGACGTCAAGTCCCGGCTGGAATGTGAGATTACCACATACCGCAGCCTTCTGGAGAGCTCGGATGGCAAGTATGT- s panTro1.chr19 42868872 251 - 82489036 TCCTACTATCCTTCTCCAT----GGTAGAGAGATTCCCAAGAGCGCATCCTAACGGAGACAGAGGCTCGCTACACGGCCTTGCTGAC----CCAGATCCAGAGTCTGATTGATAACCTGGAAGCTCAGCTGGCAGAGATCCGGTGTGCCCTGGAAAGACAGAATCAAGAATACGAGATCCTGCTGGACGTCAAGTCCCGGCTGGAGTGTGAGATTACCACATACCGCAGCCTTCTGGAGAGCTCGGATGGCAAGTACGT- s mm5.chr11 22461025 251 - 121648857 GTCTGTATGCCTCCTCTTC----CATAGAGAGAGTCCCAGGAATGCATCCTGACGGAGACGGAGGCCCGCTACACAGCCCTGCTGGC----CCAAATCCAGAGTCTGATCCACAACCTGGAGGCTCAGGTGGCAGATATCCGCAGTGCCCTGCAAAGACAGAGCCAGGAATATGAAGTTCTGCTAGACATCAAGTCCCGGCTGGAGTGTGAGATAGCCACATACCGAAGCCTTCTTGAGAGCTTAGATGGCAGGTATGT- s rn3.chr10 22256515 251 - 110733352 ATCTGTTTCCCTCCTCTTC----CACAGAGAGATTCCCAGGAATGCATCCTAGCAGAGACAGAGGCCCGATACACAGCCCTGCTGGC----CCAAATCCAGAGTCTGATCCATAACCTGGAGGCTCAGGTAGCAGAAATCCGCAGTGCCCTGCAAAGACAGAACCAGGAATATGAAGTTCTGCTAGACATCAAGTCCCGGCTGGAGTGTGAGATAGCCACCTACCGCAGTCTTCTGGAGAGCTTGGATGGCAGGTATGT- s canFam1.chr9 14388856 251 + 53642819 TCATACTTTCCTCCTCCAT----GGTAGAGAGATTCCCAAGAATGCATCTTGGTGGAGACAGAGGCCCGCTACACAGCTTTACTGGC----CCAGATCCAGTGTCTGGTCGATAACATAGAGGCTCAGCTGGCAGAGATACGGTGTGCCCTGGAAAGACAGAACCAAGAATATGAGATTCTGCTGGACGTCAAGTCCCGGCTGGAGTGTGAGATTGCCATATACCGCAGCCTTCTGGAGAGTTCAGAAGTCAAGTAAGT- s galGal2.chr27_random 598675 249 + 721164 TTCTAATGTCTTCCTTCAT------TAGAAAGCTGGACTGGAAGCCAACCTGCGAGATACAGAAGGACGATACTGCGCACAGCTGGC----ACAAATTCAGAACCTCATCACCAGTGTTGAGGAGCAACTGAGTGAAATCAGATGCGACATGGAGCGCCAGAACCAGGAGTACAGAATGCTCATGGACATCAAAAGCCGCCTGGAGCAGGAGATCGCCACGTACCGCCAGCTGCTGGAGACCCAGGACTCTCAGTACGT- s fr1.chrUn 253388495 255 + 349519338 TTCTGTCCTCCCATTCCATCTCTCACAGAAAGGGGCGCTGGAGAACACGTTAGCTGAAACGGATGCACGCTACAGCGCCATGCTCAC----CACCTTCCAGAGCACCATCAACATGCTGGAGACAGAAATCGGCAACGTGCGCGCCAGCATCGAGCAGCAGGGTCAGGACTACAAGATGCTGCTGGACATCAAGAGCAGGCTGGAGCAGGAGATCGCCACCTACAGGGGCCTTTTGGAGACAGAGGAGTCCAGGTACAT- s danRer1.chrNA 32127276 249 - 390413307 TAATAATGACTTTCCCC-C----AACAGAAAGCGTCATTGGAAGGCACTCTGGCAGACACACAGGCCCGCTACACCAACATGTTAATGGTACCAGTTCCAG------GTGAGCAGCCTGGAAGAGCAACTGATACAGCTCCGTGCTGATCTGGAGCGCCAAGGTCAAGAGTACCAGATGCTTCTGGACATCAAGACCAGACTGGAGATGGAGATTGCAGAGTACAGAAGACTGCTGGATGGAGAGGCTACTAGGTGAGAC a score=-1035.0 s hg17.chr17_random 2600394 39 + 2618010 AAAATAA--CAGCAACTTCTATGACAAAA-AAGTG-------------------------TAAATGA s panTro1.chr19 42869123 39 - 82489036 AAAATAA--CAGCAACTTCTATGACAAAA-AAGTG-------------------------CAAATGA s mm5.chr11 22461276 64 - 121648857 AAAATTA--AAGCAACATAGATGAAAGAA-ATGTGTGTGTTACAAACACACACACACACACACACAC s rn3.chr10 22256766 49 - 110733352 AAAATTA--AAGCAACATAAATGAAAGAG-GTGTG---------------TATATACACACACATAC s canFam1.chr9 14389107 36 + 53642819 AAAATAA--AAACAGCTTCTATGAGAAAATATGTT-----------------------------CAC s fr1.chrUn 253388750 39 + 349519338 AGAATGATTCATCTATTACGTTAATAAGA-ATATA---------------------------ATTAA s danRer1.chrNA 32127525 36 - 390413307 ACAACTA--CAGAAAACCTTTAGCTAAAC-ATGTA---------------------------AATA- a score=5052.0 s hg17.chr17_random 2600433 9 + 2618010 ACGCAGATA s panTro1.chr19 42869162 9 - 82489036 ACGCAGATA s mm5.chr11 22461340 9 - 121648857 ACACACACA s rn3.chr10 22256815 9 - 110733352 ATACACACA s canFam1.chr9 14389143 9 + 53642819 ATACATTTA s danRer1.chrNA 32127561 9 - 390413307 TTGCAGATA a score=53481.0 s hg17.chr17_random 2600442 203 + 2618010 TATGTACT----------------------GCCACTGGCAACAGGG---------GTCAAGTGCTTTG-TTTGACCTTCTTGCCAGTGATGGGGA-GCTTGGACAGAGGCATCCACACACCCTCTCAAGCTGTGCCATGAGGAAGACTTGCAATTGTAACCTTATCCAAATTTGAGGCATTGGCTGACCTGAGCTGTTCTGAAGAGCC-CATGGGCCAGGTTAATTTCTTATAGGTT s panTro1.chr19 42869171 203 - 82489036 TATGTACT----------------------GCCACTGGCAACAGGG---------GTCAAGTGCTTTG-TTTGACCTTCTTGCCAGTGATGGGGA-GCTTGGACAGAGGCATCCACACACCCTCTCAAGCTGTGCCATGAGGAAGACTTGCAATTGTAACCTTATCCAAATTTGAGGCATTGGCTGACCTGAGCTGTTCTGAAGAGCC-CATGGGCCAGGTTAATTTCTTATAGGTT s mm5.chr11 22461349 194 - 121648857 CACACACA----------------------CACACGGGAAATAGAG---CATCCATTCAAGAACTATGCTTCGACTTTCTTGACAATAAGGGGGACATCTGGATGGAGATTATCAAATATTCTCT----------------AAAGACCTTCAATTGTAACATAGTCCTAACTTGAGATGTGTGTGGAACTAAATCGGTTTGAAGAGATGCAT--ACCAAATTAATTCCTCATAGGTT s rn3.chr10 22256824 216 - 110733352 CACACACACACACACACACACACACACACACACACACGAAATGGGGCATCATCCATTTGAGAACTATGCTTTGATTTTCTTGAAAATGAAGGGGACATCTGGGTAGAGATTATCAAATGTTCTCT----------------AAAGACCTTCCATTATAACGTAGTCCTAACTTGAGGTATGGGTGGAAGTAAATTGGTTTGAAGAACA-CA-GTACCAAATTAAATCCTC---GGTT s canFam1.chr9 14389152 178 + 53642819 TTACTACT----------------------GTCACTGGCAACAAGG---------GGCGTGCAC-----TTTGCTCTTCTTGCCAGTGATGGGAACTTGTG-------------ATATATAGTCTCAAGCTGTGCTGTTT-GGAGA---TCAGTTGTAACCTACTCCAAATTTGAGGTCTTAG-----CTGAGTCATTCTGAAAAGCC-AGTGTACCAGGCTAACTCCTTATATGTT a score=0.0 s hg17.chr17_random 2600645 13 + 2618010 GCTTACCTTCTTA a score=600.0 s hg17.chr17_random 2600645 1 + 2618010 G s panTro1.chr19 42869374 1 - 82489036 G s mm5.chr11 22461543 1 - 121648857 G s rn3.chr10 22257040 1 - 110733352 G a score=924.0 s hg17.chr17_random 2600646 12 + 2618010 CTTACCTTCTTA s panTro1.chr19 42869375 12 - 82489036 CTTACCTTCTTA s rn3.chr10 22257041 11 - 110733352 -CATCCCACTAA a score=1146.0 s hg17.chr17_random 2600658 2 + 2618010 GA s panTro1.chr19 42869387 2 - 82489036 GA s rn3.chr10 22257052 2 - 110733352 GA s canFam1.chr9 14389330 2 + 53642819 GA a score=12649.0 s hg17.chr17_random 2600660 76 + 2618010 GTTTTAAAAATTACTAGAGAAAAAATTATTTCCCCATAGAT--GAATATTCCTGGTGACCATTACAGATGTTTCCCCA s panTro1.chr19 42869389 76 - 82489036 GTTTTAAAAATTACTAGAGAAAAAATGATTTCCCCATAGAT--GAATATTCCTGGTGACCATTACAGATGTTTCCTCA s canFam1.chr9 14389332 76 + 53642819 GTTTTTTTAAGTAGAAGAGGAAAAATGGTTTCCCCAAATATTCAAATATTCCTGGCAAC--TTATAGATTCTCCCCCA a score=5612.0 s hg17.chr17_random 2600736 36 + 2618010 CTGAGATGAACGTCTGATTTTCATGAGCTTGTACAA s panTro1.chr19 42869465 36 - 82489036 CTGAGATGAACGTCTGATTTTCATGAGCTTGTACAA s mm5.chr11 22461775 36 - 121648857 CTACGTTGAACATGGGACTTTGCTGATGTAAGAAAG s canFam1.chr9 14389408 29 + 53642819 CTGAGATGCAC-------TTTTATGAGATCCAATAG a score=811524.0 s hg17.chr17_random 2600772 1897 + 2618010 AACAACCCAGGCTCCTTTGGAGGAACAT----TCTGCTCAGGCTGAAACCCCTAACCCTATCTAGCCACTAGTCCTTGAGGCCAACAGAAGCATGTACACATGTATGTTTTAGCATCttt---tttaaaaaataaaagttataat-ttttGTAAGCAATAAGAAGCTAACCAACCCAT----AAGTAAACATATATGGAGG----ATGAGTTCTTT-----GAAGCAACTCAGTCCAAACTAAAACCCCAG----AGACTTAGTTACAATTGCAAAGGAGACCTACTTCCCGAAAATAATCAGTGAACTC--TTCACAGCATTCTTTTAATTGGC--------ATGACCACATTATGTGAGCACAA-TGGTCATCAATGCT-GTCACCTTTAGGAGCTGTGATCATATACCAAAATACCTCGAATCATCAAAGAAAGATTATGT-TTATAAAAAGAGTGTTTACTATGAACTGCTTTTTACTTCAGT----TCTCTAAAA-------------------------------ACTATGCATAGACAGCCAGAA--GGCACTTTGAAGCTTCCTGATGACACAGTGAGGACTCTTTCATAGCTGGGGTTCAGGCCACCACTATTAGTATGACTAACTCCTC---AATG--AGAAAAATATCTGGTTAATTTCCATTCCTCGGATAATAATGCCCTCAACTTGTTCCTTATCACTGTTGatcctgtgggtttagtttccattatatccattctgcagatgaaaaactaaaggttgagtgcg-ttaaatgacttagctgaggtcaccagctggtaaaggacagagctggtctctgcctcagtcttttgactgctagtgcagtattctttccacAATGTGATGGTATTGACT-----AATGGAAACTTACATAATCGAATACTTCTAAACCTAGGATGCTGATTTCCAATGGATTTAATCTGATTCTTTTTCTTCCAGTAACTACAGTACAAAATAAATGAATAAGCATTTAGAAGTATGTACTTGTCTT-GAGCAACACGTGTTAAAAAAATTAGCCACAATCATTTTTCTCCATGACCATCATCGCCTTCCCTCAATCACAGCTAAAATTGTG---------------------------------------------------------------------------------TTTTTTTTCCTTAGGCGTCCCTGTTACCCACGTGCCACCAAATGTGAGCCTTCCCCTTGGACATCTTGTAAGTCCGGAGCCATAGAAAGCACGGCCCCAGCTTGCA------CATCCTCATCCCCCTGCAGCTTAAAGGAGCACTGCAGTGCCTGCGGACCCCTGTCCCGGATACTGGTTAAAATTTGCACCATCACCAAGGAGATTAAGGATGGGAAGGTCATTTCTTCTTACGAGCATGTGCAGCCTTGTTTCATCATCAGACCTGCCAAAGTCTAACATCCCAAGGTGATGAAAATGACCCACATTTATGAAACAGAGGCCAATACATGCTCCTGCCAGAGAGGTTTAAGAAAACTCCCCAGTCCC-TTAAGGTACTTAGTTTCTTACTACTACAGCGGGTCCCCATTGCTAGGTAGAATATCTTTTATTCTGCTCCTTCCCTAACTCACCACTGCTAACATGATAATAAA-----TTACATTTCTCTGGAAGGATGTTTTGCATTTATCTGAGGGATGGGAACTGATTTGTAAGCACCCAGGAAGATGGCCTACATTGCTTGACTACCCAGGTGATTGATGGGCAGGTCTCTCTCTTGTTTACTCAGGCCTTGTTTACCGACATTCCTCCTTAGAGCCAGTCAGACAAGTT-TAGGGTTGTTTTTGGCCACCGGCACCTGAAG-GTGAAAAGCTACAACCTT--CCCTTCTAAAT---GTCTTTGGATACAGAAAGAAACATATATGGGAACAGTATAAATAGGGGAAAAGATCTTTAATATTTAATTCACTTGTGT-AGATAGTCACGAGTATGGATCCTATTAAACTCTGCT----GTCTTAATTA--TGATTTATCTATACTAACATACTTTACCTTTCCAAAGAT----------------------------------------------------ATTTTTT s panTro1.chr19 42869501 1897 - 82489036 AACAACCCAGGCTCCTTTGGAGGAACAT----TCTGCTCAGGCTGAAACCCCTAACCCTATCTAGCCACTAGTCCTTGAGGCCAACAGAAGCATGTACACATGTATGTTTTAGCATCttt---tttaaaaaataaaagttataat-ttttGTAAGCAATAAGAAGCTAACCAACCCAT----AAGTAAACATATATGGAGG----ATGAGTTCTTT-----GAAGCAACTCAGTCGAAACTAAAACCCCAG----AGACTTAGTTACAATTGCAAAGGAGACCTACTTCCCGAAAATAATCAGTGAACTC--TTCACAGCATTCTTTTAATTGGC--------ATGACCACATTATATGAGCACAA-TGGTCATCAATGCT-GTCACCTTTAGGAGCCGTGATCATATACCAAAATACCTCGAATCATCAAAGAAAGATTATGT-TTATAAAAAGAGTGTTTACTATGAACTGCTTTTTACTTCAGT----TCTCTAAAA-------------------------------ACTATGCATAGACAGCCAGAA--GGCACTTTGAAGCTTCCTGATGACACAGTGAGGACTCTTTCATAGCTGGGGTTCAGGCCACCACTATTAGTATGACTAACTCCTC---AATG--AGAAAAATATCTGGTTAATTTCCATTCCTCGGATAATAATGCCCTCAACTTGTTCCTTATCACTGTTGatcctgtgggtttagtttccattatatccattctgcagatgaaaaactaaaggttgagtacg-ttaaatgacttagctgaggtcaccagctggtaaaggacagagctggtctctgcctcagtcttttgactgctagtgcagtattctttccacAATGTGACGGTATTGACT-----AATGGAAACTTACATAATCGAATACTTCTAAACCTAGGATGCTGATTTCCAATGGATTTGATCTGATTCTTTTTCTTCCAGTAACTACAGTACAAAATAAATGAATAAGCATTTAGAAGTATGTACTTGTCTT-GAGCAACAAGTGTTAAAAAAATTAGCCACAATCATTTTTCTCCATGACCATCATCGCCTTCCCTCAATCACAGCTAAAATTGTG---------------------------------------------------------------------------------TTTTTTTTCCTTAGGCGTCCCTGTTACCCACGTGCCACCAAATGTGAGCCTTCCCCTTGGACATCTTGTAAGTCCGGAGCCATAGAAAGCACGGCCCCAGCTTGCA------CATCCTCATCCCCCTGCAGCTTAAAGGAGCACCGCAGTGCCTGTGGACCCCTGTCCCGGATACTGGTTAAAATTTGCACCATCACCAAGGAGATTAAGGATGGGAAGGTCATTTCTTCTTACGAGCATGTGCAGCCTTGTTTCATCATCAGACCTGCCAAAGTCTAACATCCCAAGGTGATGAAAATGACCCACATTTATGAAACAGAGGCCAATACATGCTCCTGCCAGAGAGGTTTAAGAAAACTCCCCAGTCCC-TTAAGGTACTTAGTTTCTTACTACTACAGCGGGTCCCCATTGCTAGGTAGAATATCTTTTATTCTGCTCCTTCCCTAACTCACCACTGCTAACATGACAATAAA-----TTACATTTCTCTGGAAGGACGTTTTGCATTTATCTGAGGGATGGGAACTGATTTGTAAGCACCCAGGAAGATGGCCTACATTGCTTGACTACGCAGGTGATTGATGGGCAGGTCTCTCTCTTGTTTACTCAGGCCTTGTTTACTGACATTCCTCCTTAGAGCCAGTCAGACAAGTT-TAGGGTTGTTTTTGGCCACTGGCACCTGAAG-GTGAAAAGCTACAACCTT--CCCTTCTAAAT---GTCTTTGGATACAGAAAGAAACATACATGGGAACAGTATAAATAGGGGAAAAGATCTTTAATATTTAATTCACTTGTGT-AGATAGTCACGAGTATGGATCCTATTAAACTCTGCT----GTCTTAATTA--TGATTTATCTATACTAACATACTTTACCTTTCCAAAGAT----------------------------------------------------ATTTTTT s mm5.chr11 22461811 1905 - 121648857 GACAACCCTGG-TCCAGTAGAGGCACGCAGTGCGTGCTCAGGCTGAAACCCCCAACCCTGTCTAGATGTGAG-CCTTCACCCCAACAGCAGCGTGCTGACAAG--GGTTTCCACATCCTTTCATTTACAAATTAAGACTTTGTAT-GTTTTTTAGTGATAATAAGACAGCCAACCCATCCAGAATTCAACTAATC----------ATGAGTTTGTT-----GAAGCAACTCAGGCCAAACTAACCCCACAA----AAACCTCATTGAAACTGCAAAGGACACCAACTGTGCCACAGTAATCAGTCACCTTCGCTCGCTGTGTTCTCTT---------------GTGTACAC--------AGCACAAGTATTAAGGGGCACT-ATTCCTTTAAAGAACT---ATAGCATAGCAAAG-ACCACCAGTTACCCAGTAAAAATCATGTATTGTAAAAAGAATGTTTAGTGCAAACTATTGGCTACTCCAACTATATATATATAT-------------------------------ATAACATACAGACATTCACAAGGGGCACTTTGACACTTCCTGGTGATATGCTAAAGATTCCTCTGTAAGTAGCGTTCAGACCACCTCTAATTGTATAACAAACTCCCCCCACACC--AGAAAATGACCTAACTCATCTCCATTCGCCAGATAGAAAGCCCCTCCACTCTCTGCATACCCT------TTATGGGAGTTAAGTCCCCATTGTGTCCATTCTGACCACACAAAACTAAAGTTCAGGAGGGCTTGACTGCTTCAGCCAAGGTCACCCACTAGCAAACAAGAGAACTGGGCCCTGCCCCTGTC-TTTGATTGCTGGTGCAGTGTGTTTCCCATGGAGCTAGAATAGCAGTT----------GAACCCAGGT-----AATACTTCTCAAGCCAGGAAGCTATCTTCCAATGGATCTGCTCTAATTCTCAATCTTCTGCTAACTACAGCACAAAATGAATGAATGAGCATTTAGTG----GTGATTGTGTTCAAGTGACAAGTATT-GAAGACTTAGCCACTCCCA-TCTTCTTCGTAGCGATCATTGCCCTTCCTCGATCA---CTAAAATTCTG------------------------------------TTGCTGCTCTTGTTATTGCTGCTGCTATTGTTGTTGCTGTTCTCATTGTTTCTACTTAGGCTTCCCTGTAACCCATGTGCCACTAAGTGGGAGC------------CATCCTGCCAGGCCAGAGCTATGGAGTGTTTTACCCCAGTTTATA------CATCTTCATCACTCCCTGGGATTCACAAGCCCTGCCGTGCCTCTGGACCCCCATCCCGGATACTTGTTAAGATATGCACCATCACCAAGGAGATCAAGGATGGGAAGGTCATTTCTTCTTACGAGCATGTGCAGCCTTGCTACATCACCAGAGCTACCAAAGTCTAGCATCTCAAGGTGATAAGAATGACCTCCATTCATGAAAGAGAGGCCAGTGCATGCTCCTGCCAGAAAGGCTTAAGAAA--CCCCCAGTCCC-TTAAGGTACCTAGTTTCTTACTACTACAGTGGGCTCCCA------------------TGTGTTCTTCTCCTTCCCTAAGTCACTGCTACCAACATGATAATAAG-----TCACATTTCTCTGGAAGGACATTACGTA-TTGTCGCAGGGATGGGAACTGGTTAGCTAGT-------------GCCTACATTGCTTGCCTAGTCAGGTGTCGGACAGGCAGGTTTTCCTTTTGTTTATTCAAGCCTTGTTTATCTCTGTACCTCTGTAGAGCCAGTCAGACAAGTTCTGGGGTTGGTTTTGGCAGTTGGCACGTGAAACGTAAAAAGCCACAGCCTT--GCCTTCTGAATTCCTTCTTTGGATGTAGAATGAAGCCGACACAGGAACCGAATAAATAAGGAAGA----CCCAGATGACTAGTCCCCAGGAATGAAACAATGATATGCCTGGATCCTGCTGACCTTCGCC----ACCTCAACCAATTGATTC-TCTGTACTAGTATATTTTCCTGTTACCAAAACAGAACT-----------------TGGGGGGGGGGGCTTTCTGCATGCTCTAGATTCTTC s rn3.chr10 22257418 1925 - 110733352 GACAACCCTGG-TCCGGTAGAGGCACACAGTGCATGCTCAGGCTGAAACCCCCAATCCTGTAAAGATGTGGC-CCTTCACTCCAACAGCAGTATGCTAACATGTA-----------CTTT---TTTAA---------------------------TGATAATAAGCCAACCAACCCATACAGAACTCAACTAATC----------ATGAGTTCGTT-----GAAGCAATTCAGGCCAAACAAACCCCACAA----AAGCCTCATTGAAATTGCAAAGGACACCAACTGTCCCTCAGTAATCAGTCATCTCCGTTCACTGCGTTCTCTTTACTGTT--------ATGACCACGC------AGCATGGATGTTAATGGCCACT-GTTCCTTTAAAGAACT---ACAGAATACCAAAG-GCTACCAGTTACCCAGTGAAAATCGTGTATTGTAAAAAGAATGTTCACTGCAAACCACTGGCTATTCCAAT----TTTCTGAAAAAAAAAAAAAAAACAAAACAAAACAACAACGACAACATATAGACATCTAATGGGGGCACTTTGACACTTCCGGGTGATATGCTAAAGATTCCTCTGTAAGTTGTATTCAAACCACCTCTAATTGTATGATGAACTCCCC---CATGCCAGAAAATTATCTAACTAATCCTCATTCTCCAGATAGGAAGCCCCTCCACTTTCTGCATACCCTTGTTGATC-TGGGAATTTAGTCCCCATTATGTCCATTCTG---ACACAATACTAAAGCTCAGGAGGTCTTGACTGGTTCAGCCAAGGTCACCCACTAGCAAACAAGAGAGCTGGGCCCTGCCTC-GTC-TTTGACTGCTTTTGCAGTGTGGTTCCCATGGAGCTAGAGTAGCAGTT----------TAACCCAGGA-----AATATTTCTCAAGCCAGGAGGCTGTCTTCCAACGGATCTGCTCTAATTCTCCTTCTTCTACTAACCACAGCACAAAATGAATGAAAAAGCATTTAGTG----GTGATTATGTTTGAGTGACAAGTATT-GAAAACTTAGCCACTCCCA-TCTTCTCCATAGCGATCATTGCCCTTCCTTGATCA---CTAAAATTCTGTTGCTGTTCTTGTTGTTGTCGCTGTTGTCATTGCTGTTGCTGTTGTCATTGTTG---------------------------TTGTTTCTACTTAGGCTTCCCTGTAACCCATGTACCACTACATGGGAGC------------CATCCTGCCAGGCCAGAGCTATGGAGTGTCTTACCCCAGTTTATA------CATCTATATCACTCCCCGGGATTCACAAGCCCTGCCGTGCCTCTGGACCCCCATCCCGGATACTGGTTAAGATATGCACCATCACCAAGGAGATCAAGGATGGAAAGGTCATTTCTTCTCACGAGCATGTGCAGCCTTGCTACATCACCAGACCTGCCAAAGTCTAGCATCCCAAGGTGATAAGAATGACCTCCATTCATGAAAGAGAGGCCAGTGCATGCTCCTGCCAGAAAGGCTTAAGAAA--CCCCCAGTCCC-TTAAGGTACCTAGTTTCTTACTACTACAGCGGGCCCCCA---------------TCTTTTGTTCT--CCCTCACTTAAGTCACC------AACATGATAATAAG-----CCACATTTCTCTGGAAGGACATTCTGTA-TTGTCGCAGGGATGGGAACTGATTAGCTGGT-------------GCCCACATTGCTTGCCTAGCCAGGCGATGGACAGGCAGGTTTTCTTTTTGTTTATTCAAGCCTTGTTTATCTCTGTACCTCTGTAGAGCCAGTCAGACAAGTTCTGGAATTGGTTTTGGCAATTGGCACGTGAAG-GCAAAAAGCCACAGCCTT--GCCTTCTGAATTCCTTCTTTGGATGTAGAATGAAGCCGACACAGGAACAGGACAAATAAGGAAGA----CCCAGATGTCTAGTCTCCAGGAATGAAACAATGACATGCCTGAATCCCGCTGACCTTCACTCGTCACCTCAACCAACTGATTC-TCTGTACTAGTATATTTTCCCGTCACCACAAAATAACTTGCGGGGGCTTTTCTGCACACTCTAGATTCTTCCCCCACTCCTA--ATTTTTC s canFam1.chr9 14389437 1883 + 53642819 ACTGACCCTGTTCCCTTTGGAGGAACAT----TCTGCTCAGGCTGAAATGCCCACACCTATCCAGCCACTTGTTCTTGATGCCAATAGCAGCATGTAGATATGTGTGTTTTAACACCATT---TTTTAGAAAAAGAAATTATAATGTTTTTTCAATGATAAGAAGCCAACCAAATCAT----AAG-GAACTGACCTAGAGAGACCACAAGTTGTTTAGAGGAAAGCAACTCAGTCCAAACTAACACCCTAGGTGCAGACTTAGTTACAGTTGTTACAGAGACCTTCTTCTCCAAAATAAGCAGTGAACTCTGTTCATAGGATTCTTTTAACTGGCACATTTTAACTGCCACATTATACCAGCACAA-GATTCACCCCTGCTAGTCACTTTGAGGAGCT---ACAATATACCAAAGTTGCTTGAATCATCAAAGAAAGATGATGCTTTCTAAAAAGAGTT----CTGTTAACTGCTTCCAACTCCAAT----TCTGTAAAG------------------------------TTTCATTTAAATACGCCCAGAA--GGCACTTTGAAGCTTCCTGAAAAAACCTCGAGGACTCTTCCATAGATGAGGTTCAAGCCATCAGTACTATTGTG----GCTCTCT---GATA--AGAAAAATATCTGATTAACTTGCTTTCCTCAGATAATAAGCCCCTTAACTTGTCCCTTATCACTGTTGACCATGTACGTTtagttctcactatacttattgtgcaggtgaagaactaaagctcaggagga-ctcactgatttatcttaggtcaccagctggtgaaggacaaagcta--ctacaccctggtc-tttaactcctggcattacgtcctt-ccacCGTGTG-TGGTAGCATTCTCCATAATAGCAGCTTACATAACCTAACGCTTCTAAACCTAACTTGCTGCTTTCCCATGGATCTGGTCTCATTCTTTTTCTTCCACTAATGATAGAATAAAATTAATGAATAAGCATTTGGGA----GTACTTGTTTC-AAGTGATGCAT----GAAAAACTGCCCACCGCTATTGTTTTCTATCACCA-CATTACCTTCCCTCAGTCACAGGTAAAATTCTG---------------------------------------------------------------------------------GTTTTTTTC--TAGGCTTCTCTGTAACCCGTGTGCCACCAAATGTGAGC------------CTTCAAGTAAGGCCAGCGCCATGGAATGCACAGCTCTGGTTTACAATACACCATCCTCAGATTCCCGCAGGACACAGGAGCCTTGCTGTGCCTACAGAGTCCTTCCCCGAATACTGGTTAAAATCTGCACCATCACTCAGGAGATTCAGGATGGCAAAATCATTTCTTCCCATGAGCATGTGCAGCCTTGCTTCCTTATCAGAATTGCCAGAGTTTGACATCCCAAGGTGAAGAAAATATCCCTCGTTCATGAAAGAGAGGTCAATACTTGTTCCTACCAGAAAGGCTTAAAAG---TCCCCAGCCCCTTTAAGGTACTTAGTTTCTTA-TACCACAGTGGGTGTGCACTGCTAAACAGAATACCTTGTATTCTGATCCCTCCCTAAGTTGCAGCTGTCAACGTGATAATAAGATGGATGAAATTTCTCTAGGAGCACATTACCCATTTCTCTGAGAGACAGGCAGTGATTTGTAGGTGCCCAGGAAGGTTCCCTACATTACTTGACTTCACAAGTGATATGC-----GGTTTCTCTTTTGTTTACTCAGGTCTTGTGTACTTATATTCCTCACTAGAGCCAGTCAGACAAGTTCTAGGATTGCTTTTCGCCA-TGGTACATGAT--GTCAAAAGCTGCAACCTTCCCCCTTCTAAAATCCTTCCTTGGCCATGGAAAGAAGCCTCTATTCGAATAGCATGAATAGGGGAAAAGATCATTAATGTTCAGTTTCCTTGAAA-----AGTCATGAGTCTGTCTCCTGTTGAACTCCGCT----GTCT--GTTA---------TCCATACTGACATACTTCATGTTCCCCAAGAT----------------------------------------------------ATTTCTG a score=-123.0 s hg17.chr17_random 2602669 1 + 2618010 T s canFam1.chr9 14391320 1 + 53642819 A a score=-31.0 s hg17.chr17_random 2602669 1 + 2618010 T s rn3.chr10 22259483 1 - 110733352 C a score=273.0 s hg17.chr17_random 2602669 1 + 2618010 T s panTro1.chr19 42871398 1 - 82489036 T s mm5.chr11 22463716 1 - 121648857 T a score=634202.0 s hg17.chr17_random 2602670 1693 + 2618010 AAATGTCCATGGTCTCCAAAACTTTGTGACCTATTAGGC---TCTCCAAATATTT---TATTTGAGAAT-CAGATAAGTTGTGGGGAGTGAATCTA---------------GAACACTTTGAAGAAATAGCATGGGTCTTTTCATTAAACATTTGCTATTTCTCTTTCTATTCTTTAGGGAATGGGAGTTTGTTCTGATTGTTTGACAAGGAACATTTAGCTGGAATTCTCAAGAAATAACCCTTCTTCCCCTCCCTGTGAAGAGTGACAAAGAAAAACATAGCTTAGATTCCTGCTTCAATCTATCCATCAGAG---TAAATGGACATAATATCCACACATTTTGCAGAAAAGCAAT-AGTGAATAATTGCTGCTTGTAAGTGCAAGGCAG-TCCCAATGTGAGAAGGCATCATTTAT-ATACCAGCCATCATCACAGCTTCTTACAGGATAGTCTCAGAATATGTAAGTCATTCCT---GACAATAAT-CATTGGACATTGCCAGAGGT------TTTAAGAAATAATTCAAAATCAaacacaga-tgggtagtcaaaaggcctgaagtcctacacctgc--atttcccagctgtgaccttggggaaaacatttagacttcatcaaatttaatttctgtgtttgttaaatgaggatcatgcctacttcacagggttgttgtgatgatcaaatgaaattgtttatgtgacactgcttTGAATGCTGAAAAGCACCAC-CCAATGTAATTTTTATGTAAGTTTTGCTTTTAGCTACAGCCCTAGACCTATTTTT-----GTAATTATCTCATTTTAAAATTCTTTCTTCATGAATTTAGTTATCCAGTCATGATTTTGGAG-TTTTAATAGTGTTTAAC----TTTTAGGA--GAAAAAAAAACAT-----GATTTCC-TGTGATCAGGCCCACA---ATTCTACTCAATAAAGCATTTTTCAGTTCTTAGGGTATGTATCGCATATCAATGAGTCAATAATGCCTGATGCCCACATCAAAGACACATGCATTGTGTAACTTACAGCTTGATGATTTACTTCCTCCAGACAAGTAGCAACTTACACTAGGCAAGTGGAATGCAGAACTCCCAGAATGACCTCTTTTAAATCAATAATTTCTCTCTCATCTGAGTGGGCAGAGTACCTCCGGTCAGTAGTTAACTGCGTACTATCTCAGGCTgcaggatgaaaatgtggaaagagcatggaactgggattcagaaaccttgggacggagtctcaatccagcctgggcatgtatgacctcgagtaaatAGGATATAACAATATAAGCCCTGCCTACCACACGGCTGCAAGGATAAAATGGAATAATAATGGTGAAAGGGTCTCATAAAC--TGTAAGGTGCTTTGCAGAAGGGCATTCCTATTCCCTATATTTAAACCTAGACACATGTCGTTTCCATCAATACCTTCTTCCTTTCTTTCTGGTTCAGTGCTGGGCCCAGGTGGAC----CTTGATATATATCATCCACACTAAA----------------------------------ATCTGCTCCGAGCTA--------------------------------CAAAATTAGGGTTGAGGAATCTCACTGGACTCAAGCTAAGATTGAACTGATGCAGCAGTGCCATTTTCAGTTTAT-CCTAGAAGTAGGATGCCTTCCTCCTATGGAGAGCAAAATATCCCCCATGCCATTCATGGTTTTAA--AAAATATATGATTATAAGCTGCACAGTAAAGAGGGGAGTTAGCCACTCGAAGGC--TTGCAGTTTTGT--TTTTTTTTTTAAGTGTCT s panTro1.chr19 42871399 1691 - 82489036 AAATGTCCATGGTCTCCAAAACTTTGTGACCTATTAGGC---TCTCCAAATATTT---TATTCGAGAAT-CAGATAAGTTGT-GGGAGTGAATCTA---------------GAACACTTTGAAGAAATAGCATGGGTCTTTTCATTAAACATTTGCTATTTCTCTTTCTATTCTTTAGGGAATGGGAGTTTGTTCTGATTGTTTGACAAGGAACATTTAGCTGGAATTCTCAAGAAATAACCCTTCTTCCCCTCCCTGTGAAGAGTGACAAAGAAAAACATAGCTTAGATTCCTGCTTCAATCTATCCATCAGAG---TAAATGGACATAATATCCACACATTTTGCAGAAAAGCAAT-AGTGAATAATTGCTGCTTGTAAGTGCAAGGCAG-TCCCAATGTGAGAAGGCATCATTTAT-ATACCAGCCATCATCACAGCTTCTTACAGGATAGTCTCAGAATATGTAAGTCATTCCT---GACAATAAT-CATTGGACATTGCCAGAGGT------TTTAAGAAATAATTCAAAATCAaacacaga-tgggtagtcaaaaggcctgaagtcctacacctgc--atttcccagctgtgaccttggggaaaacatttagacttcctcaaatttaatttctgtgtttgttaaatgaggatcatgcctacttcacagggttgttgtgaagatcaaatgaaatggtttatgtgacactgcttTGAATGCTGGAAAGCACCAC-CCAATGTAATTTTTATGTAAGTTTTGCTTTTAGCTACAGCCCTAGACCTATTTTT-----GTAATTATCTCATTTTAAAATTCTTTCTTCATGAATTTAGTTATCCAGTCATGATTTTGGAG-TTTTAATAGTGTTTAAC----TTTTAGGA--GAAAAAAAAACAT-----GATTTCC-TGTGATCAGGCCCACA---ATTCTACTCAATAAAGCATTTTTCAGTTCTTAGGGTATGTATTGCATATCAATGAGTCAATAATGCCTGATGCCCACATCAAAGACACATGCATTGTGTAACTTACAGCTTGATGATTTACTTCCTCCAGACAAGTAGCAACTTACACTAGGCAAGTGGAATGCAGAACTCCCAGAATGACCTCTTTTAAATCAATAATTTCTCTCTCATCTAAGTGGGCAGAGTACCTCCGGTCAGTAGTTAACTGCGTACTATCTCAGGCTGCAGGATGAAAATgtggaaagagcatggaactgggattcagaaaccttgggacggagtctcaatccagcctgggcatgtatgacctcgagtaaatAGGATATAACAATATAAGCCCTGCCTACCACACGGCTGCAAGGATAAAATGGAATAATAATGGTGAAAGGGTCTCGTAAAC--TGTAAGGTGCTTTGCAGAAGGGCATTCCTATTCCCTATATTGAAACCTAGACACA--TCATTTCCATCAACACCTTCTTCCTTTCTTTCTGGTTCAGTGCTGGGCCCAGGTGGAC----CTTGATATATATCATCCACACTAAA----------------------------------ATCTGCTCCGAGCTA--------------------------------CAAAATTAGGGTTGAGGAATCTCGCTGGACTCAAGCTAAGATTGAACTGATGCAGCAGTGCCATTTTCAGTTTAT-CCTAGAAGTAGGATGCCTTCCTCCTATGGAGAGCAAAATATCCCCCATGCCATTCATGGTTTTAA--AAAATATATGATTATAAGCTGCACAGTAAAGAGGGGAGTTAGCCACTCGAAGGC--TTGCAGTTTTTTG-TTTTTTTTTTAAGTGTCT s mm5.chr11 22463881 1666 - 121648857 AGATGTCCACAGTCTCTGAAACTTGAGGAACCACAAGGCTCTTCTCCAAATACTT---TCTTTAAGAATGAAGATTAGTTGTGTAGTATGAATCCAAGGGTCTCTCTTTAGGATCATGTTGAAGCAATAGCCTGGGTCCGCTCATTAAAGGTTGGCTGTTTCTCTTCCTATCCCTTAGGGTATGGGAGTTTGATCTGCTTGTTTGACAATGGGCATAGAGCTGGATTTCTCAAGACATAAGACC--------------TGATGGGTAACAAGGACAAA-ATAGCTTAGATGCCTGCATCAATCCTTCCATCAGAG--AGGGATGGAATTAAGAGCACCAAACTTTCCAAAAGAGCATT-AGTGAGTAATTTCTGCTTGCCAGTAAGAGGCTGCTGCAAATACCAGCAGTCACCATTCAG-CT-CCAGCCAGTATCACAACTT-TTAGAGCAGGTCCACAGAGCAGGGGAGTCATTCTT---AAAAAAAATATATTGGACCTTTTCAGAGGTGTCAGCTTAAAAAAAAAAGTCTAAATCAAACACAAACTGTAGAGTTCCAAGACCTG-ATTCTTAAACTTGCCAATTTCCTATC-ATGACTCTGCATAAAATGTCCAGCCTTCCTCAAA-CTGATATCCTTATTTACTCACTGAGGGTCACACCTGCTTCAAAGGGCTGTTGTGGAGATCACTTGAAACCCATTCTGTACC----------------------------------TGGTCCTTGTGTATGTTTAGCCATTAGCTAATTAGCTAGACTTAATTTTCTTTCATCATTACTTCATTTTAAAATTCTTTCTCTGCGAATTTAGTTATCCAGTCATGATTCAAAAGTTTTTAACAATGTTCAGCAATGGTGTGGGG--GGTGCAAAAATA------GAACATC-TGTGATTATACTCATA---ATTATACTAAATAAAGCATCTCTGAATTCTTAGAGTGTGTGTCAGATACCAGT--------------TGATGCTCACATCAAAGACATTTGCGGTGCTGGACTCACAGCTCAGCCGAATGCTTCCTCCAGAAGAACAGTGGCTTACACAAGGCAGATGGGATGCAAGCCTCCAGGAAGAGTCTCTTCT--GTTGTCAGTTTCTCAATGACATAA----GCAGAGTCACTCCTGTCAGCCCCTCACTATGTATTGGCTCAGTCTGCAAGATGGCACTATGGACAGAGTAAAGACATGGTGCTCAGAAACCATGAAC---AGCTTCCACCCAGGGTGTGTGTGTGTGACCTTGAGTAAAAGTGATTTAACAGCATTGGCCTTGCCTGGCATATAA-TGGAAGGGTTCAATGGGCTAAT--------GAAGACTTTGTAAATGATGCGTAGTGCTAGGCAGAAATAAGTTCTTGGTCCTTAAATTGGGCACTAGACATGTGTCATTTTTATCCATAGTTGTTTCCTTTTGGTTTGACTCCGTGCTAGG-CCAGGTAGATCCTGCCTGCTATACACCATCAACACTAAATAAGAAGTT-------------------------GTTTGCTAAGAGGTGAGAGGTACTCACCTTGCTCTCTTGATTCCATCTGAACCTAGGATTTAGGAACCT-------------CTAACCTTGGGCAGATGCAACAATGACACTCTCCATTTATGCCCCAAAAGAAGACACCTTTCTCCTACTCTGATCAAAATATCCCCCATGCCACCCCATGCAAAAAATAAAATAAAATACTATGATCTGCATAATAAAAACAAAACCTGGCACCTCTAAGAC--CTA-----------TTCC---------TGTTT s rn3.chr10 22259484 1642 - 110733352 AGATATCCATGGTCTCTGAAACTCGGGGAACCACAAGGCTCTTCTCCAAATATTT---CCCTTAAGAATGAAGCTTAGTTGTGTGCGATGAATCCAAGGGTCTCTCTTTAAAGTCATGTTGAAGCAATAGCCTGGGTCCTGTCATTAAAAGTTAGCTATTTCTCTTTCTATCCCTTAGGGGATGGGAGTTTGATCTGCTTGTTTGACAAGGGGTATAGAGCTGAATTTCTCAAGGCATAAGACC--------------CGATGGGTAACAAGAACAAA-ATAGCTTAGATCCCTGCTTCAATCTTTCCATCAGAGAGAGAGATGGAATTAAGAGTCCCAAACTTTCCAAAAGAGCATT-AGTGAGTAATTTCTGCTTCTCAGCAGAAGGCCACTCCAGATGCCACAAGGCACCATTCAG--TACCAGCCAGTATCACAACTT-TTACAGCAGGTCCACACAGCAGGAAAGTCATTCTTTGAAAAGAAAAT-TATTGGACCTCTTCAGAAGTATCAACTTTAAAAAAAAATT--AAATCAAACACAAATTGTAGAGTTCCAAGATCTG-TTTCTTAAACTTGCCAATTTCCTACC-ACAAC--TGCATAAAACGCCCGGTCTTCATCAAA-CTGTTTCCCTTATTTGC--ACTGAGGGCCACACCTACGT---AGGGCTGTTGTGGAGAGCACTTGAAACCCATCT--------------------------GTACC---------TGACCATTGTATATGTCTTGCCATTAGCTAATTAGCTAGACCTAATTTTCTTTTATCATTATTTCATTTTAAAATTCTTTCTCTGCGAATTTAGCTATCTAGTCATGACTGGGAAGTTTTTAACAACGTTGGGG--------AGGG--GGAACAAAAATAG---AACATCTTC-TGTGATTATACTCATGATTATTATACTAAATAAAGCGTTTCTGAATTCTTAGAGTATGTGTCTGATTCCAGT--------------TGATGCTCACATCAAAGACATTTGCCTTGCTGGACTCACAGCTCAGCCGAATGCTTCCTCCAGAAGAGCAGTGGCTTACACAGAGCA-GTGGAATGCAAGTCTCCAGGAAGAGCCTCTTCT--GTTGTTAATTTCTCAATGAAATAT----GTAAAGTAGCTCCTGTCAGCCCCTCATT-CGTATTGGCTCAGCCTGCAAGACGGAAATATGAACAGAGTAAAGACCTGGTGCTCAGAAACCATGAAC---AATCTCCACCCAGTCT----CCGTGTGACCTTGAGTAAAAGTGATCTAACAGCATTGGCCTTACCTGGCATATAA-TGGAAGGGTTCAATGGGCTAAT--------GAATACTTTGTAAATGATGTGTAGTGCTAAGCAAAAATAAGTTCTTAGTTCCTAAATTAGACACTAGACATGGGTCATTTTTATCCATAGCAGTTTCCTTTTGATTTAACTCAGTGCTAGG-CCTGGTAGAT----CCTGTT-CACAGCATCAACAGTAACTGGAAAACT-------------------------ATTTGCTAAGAGGTGAGAGCTACTCACCTTGCTGTCTTGATTCCGTCTGAATCTAGGCTTTAGGAACCT-------------CTGACCTCGGGCTGCTGCAACAATGACATTCTTCATTTATGCCCCAAAAGAAGACACCTTTCTCTTACTCAGATCAAAATATCCCCCATGCCACCCCATACT---A--AAAATAAAATATTATGACCTGCATAACAAAGACAAAATCTGACACCTCTAAGGC--CTA-----------TAAT---------TGTCT s canFam1.chr9 14391321 1691 + 53642819 AGATGTCTGTGTTCTCCAAAACTTTG-AAATGATTGGGC---TCTCCAAATATTTTCATCATCAAGAGTCAGGAAGAGTTGT--GGAGTGAATCTA---------------GAGCATTTTGAAGGAATAACATGGATCCTTTCACTAAATGTTTGCTATTTCTCTTTCCACTCTTTAGGGAATGGGAGTTGTTTCTGACTATTTAACAAAGAACATGGAGCTGGAACTCTCACACGCTATTCCT---CCATCTCCCTGGGACTGATGACCATGAAAAC-ATAGCTTAGCTTCCTCCTTCAATCTATCCATCAGAG--AGAAATGGATTTGATATC-ACAAACTTTGCAGAAAAGTAATCATTGAGTAATTGCTGCTTGCAAGCACAAGACAG-TCCCAA-GTGAGAATGGTATGTACATGGTACTGGCCATCATCAGAGCTTCTCACAGCAAGGTCACAAAGAGATTCAGTCAATCCC---TACAAAAAT-TATTCAGTATTTCCAGAAGT------TTTAGTAAATAATTACAAATTAAATATAGAATGtggagtc-aaagacctgaagtcctaaactagt----ttctt----gagaccttagacaaaacatctagccttcatcaaatttaatttccttatttgttaaatgagaaccttggctacttgacaggtttgttgtgcagatcaaatgaaattgttcatatcatgctacttagtacactgAAGAACATGGTGCAAATGTTATTTTTACATAAGCTTTACTTTTAACTACAGCCCTAGACCTGT---------GTTATTATCTCATGTCAAAATTCTTTCCCCATAAATTTAGTTATCCACTCATGATTTGGGGAGTTTTAATAGTGCTTGGC----TTTGAGGGGTGAAAAAAGAACAGAACAAGATCTTCTTGTCATCAAGCCTGCA---ATTTTACTCAGTAAAGTGTTTCTGAAG--TTAGGGTCTATATCAGATATCAGT-------TGATGGCTGGTGCCCACAGCAAAGACAAAAGTGTCGTTTAACTCAT-GCTCAGCAG-CCACTTCCTCCAGACTAGTAGCAACTTGCACTGAGGGAGTGGAATGCAGAACTCCCAGAGAGATCTCTTTCTTGTCAATAACTTCCTTCCCATCCAAATTCCCAGATTACCCCTGGT-AGCACATCACTGCATACCATCTCAGACTGAATGATAGAAATGTGGGAAGAGCAGGGGGCTTGCACTCAGAAGCCATAGGAGAGAGTCTCACCCCATTCT--ATGTGTATGACCTTGAGTAAAAGGGACATAAAGATGTAGGC----CCTAACACAC---TAGAGGGATTAAATGGAATAATAATAGTGAAAGGGTCCTTTAAGT--TATACAAGGCCAGGCAGAAGGGAGGTTTTGTCCCCTG-ATTGGAAACCAGGCATTTGTCATTTCCTTACATA-CTTCTTCCTGTGTGTCTGGTTAAGTGATGGTCCCCAGTGGAT----CAC-ATATGTACTATCAACACTAACTGGAAAACCAGTTAAGGAGAGGCTGGAGTTCTCAGTCTGCCCTAAGTTT----------------------TGATTTCAACAGGATTCAGAGTTTAGGAACCTTTCTGGACTCAGGCTAAGCTTGGGCTGCT------ATGGCATTCTCAGTTTAT-CCACAAAACAAGATCTCTTCTTCCCACTCCAGGCA----------TGTGCCACACTCGGCC------AAATTATAGGTATTTGAA----ACCAAAAAGACAGGATCCTAGTCCTGTAGGGCAGTTATAACACCAGGTTCCTTTCTCTGAAAGTCT a score=38332.0 s hg17.chr17_random 2604363 123 + 2618010 TCTTCGTATAAGAGAATGTAAAACCAT--TTGCTGG---TTGTATGCATGTGGTCAAAACTTT--------TAAAGGCAATAAGGAGACTGGATTTTTACTAGGAGGCTAAATAAGTATCCTACACAGCCACAGGA s panTro1.chr19 42873090 123 - 82489036 TCTTCGTATAAGAGAAAGTAAAACCAT--TTGCTGG---TTGTATGCATGTGGTCAAAACTTT--------TAAAGGCACTAAGGAGACTGGATTTTTACTAGGAGGCTAAATAAGTATCCTACACAGCCACAGGA s mm5.chr11 22465547 135 - 121648857 CCTTTGTATATGAGCATGTAAAACTATAGCTTCAGGATTTTCTTTGCCTATGGCCAAAAACATAAAATAAATCAAAGCAGTATCAAGTCGAGATTTTT-CTAGAAAACTGATTAAGTATCCTATACAGCCACAGGG s rn3.chr10 22261126 133 - 110733352 CTTTTGTATAAAAGCGTGTAAAACTAT--CTTCAGGATTTTGCTTGCCTATGGCCAAAAACGTAAAATAAATCAAAACAGTATAAAGTCTAGATTTTT-CTAGAAAACTAAATAAATATCCTATACAACCACAGGA a score=300.0 s hg17.chr17_random 2604486 1 + 2618010 G s panTro1.chr19 42873213 1 - 82489036 G s mm5.chr11 22465682 1 - 121648857 G a score=3666.0 s hg17.chr17_random 2604487 39 + 2618010 GAAATTTAAGGTTTTATGACAGTTCAGCATAAGTCAGCA s panTro1.chr19 42873214 39 - 82489036 GAAATTTAAGGTTTTATGACAGTTCAGCATAAGTCAGCA a score=110257.0 s hg17.chr17_random 2604526 701 + 2618010 GCTAGAGCAGAAAAGGGGCTCGTGGGGAGGGAAAGTGTAATTTTAGCACAGTTCGAAAGACAACCATGAATCAGGAAACACAGCATGGTGTCCAGAGCCTGAGGTCAAATCCTATATCTCTGCTTCTCACTCTGAGGGTCCATAATTATATTTCTTAAAAAGGGAGATATTTTAGATATATTTTTTCTAGATTTTTTTCCTTTCTTCTTGTTGACTCCA-CTTCATGTCATAGCTAGTTTAAACTCTTCCAAACACAGAGGTAAGTAACCACGCTTCCCCCTTTCTCCTTGCCTCTCACCCCTTAACTGTCCCCCATCACCTGCCCCCATCACACAGCCCACACCCTTTGCATCCTTACTTCCCAGAGCCAATTCCAGCAATTGCTGATCAGAAGAGACTACCCAGAAACTTTTCCTCCAGAGTTCAGTTAGTGGTAACCCCTTACCTGACGTCCCGCCAAAACTTCTCCAGTGTGACCCAGAAGCCACCTGCAATTGCATTAATAGGGGAGTCTGTATCattcagattcctgggccttaccccagacctcctgtatctgcatctccagctgtgggacctgggaatccaaattttaacaaaagtctcagctgaagtgtgtgcactgaat--taaaagccactgCTTTATCACTGAT-GGGGGCTTTTGGCTTAAAGATCTGAATGACTTGATGACTTATTTGAGG s panTro1.chr19 42873253 702 - 82489036 GCTAGAGCAGAAAAGGGGCTCGTGGGGAGGGAAAGTGTAATTTTAGCACAGTTCGAAAGACAACCATGAATCAGGAAACACAGCATGCTGTCCAGAGCCTGAGGTCAAATCCTATATCTCTGCTTCTCACTCTGAGGGTCCATAATTATATTTCTTAAAAAGGTAGATATTTTAGATATATTTTTTCTAGATTTTTTTCCTTTCTTCTTGTTGACTCCA-CTTCATGTCATAGCTAGTTTAAACTCTTCCAAATACAGAGGTAAGTAACCACGCTTCCCCCTTTCTCCTTGCCTCTCACCCCTTAACTGTCCCCCATCACCTGCCCCCATCACACAGCCCACACCCTTTGCATCCTTACTTCCCAGAGCCAATTCCAGCAATTGCTGATCAGAAGAGACTACCCAGAAACTTTTCCTCCAGAGTTCAGTTAGTGGTAACCCCTTACCTGACGTCCCACCAAAATTTCTCCAGTGTGACCCAGAAGCCACCTGCAATTGCATTAATAGGGGAGTCTGTATCattcagattcctgggccttaccccagacctcctgtatctgcatctccaggtgtgggacctgggaatccaaattttaacaaaagtctcagctgaagtgtgtgcacggaat--taaaagccactgCTTTATCACTGATAGGGGGCTTTTGGCTTAAAGATCTGAATGACTTGATGACTTATTTGAGG s canFam1.chr9 14393081 584 + 53642819 GCTAGAGCCTG--------TCTCAGAGAGGGAAAGAATA-----------------------------------------------------------------TCAAAACCCA----------------TTTGGTGGTCCATAATTTTATTTCTAAACAAAGGAGGT-TTAGGGATATATTTTCTCTAGATTTCGT--CTTTTTTCATGTTGACTCCACCTTAATATGACAGCTGGTTTAAACACTTCCAAAT------------------GCTTCTCTCTTCCCCTTCATCTCTCAATCATTAATTGCCTTC-----CCAACCCCTAT-ACATGACTCACAATCTCTCCATCTTCAGCCTCTAGGATCAATTCCAGCAATTTCTGCTTAGAAGAAGTGGCCTGAAAATTTTCCCTCAAGAGTTCAGTTAGTGGTAACCCCTTACATTACTTGCCACGAGGATTTCTCTAGT-TAACCTAGAAACCACTTCTATCCAAGtcccctgaggaacctataaaattcagattcttgggccctaccctagacctcctacattagcatctccaggtgtgggacctgggcatccaaatttt-acaaaattttcagccaaagcatgtacgccaaattataaaagccactgCTTGCTAACTGACAAATGCTTTTTGGTTTAAAGATCTGGATGACTTGCTGCC---TTCGGGG a score=76021.0 s hg17.chr17_random 2605227 432 + 2618010 CTTTTAGATTTGGGCA-TAGCTTGATAGACAACCACA-----CATGCAGAT-TCCCCCCTCCTTCGTGTCTATTCGCCTGTTTATAAAATGGAGTTAATCAATAA--TGACCAATAATTTAATAAA--TATCatcaactcatttaatcctcacaaccccatcatgaagtagatattattaatagccccatttcacagatgaggaaactgctgggcagaa-aatttaactgactcatccatgccgcacaATAATGGG-ATTGAATTATCAGTACTTTTATTTCCTT-AGAAAGGTCAAATAGCACCTGATA--------------CAAGAAC----AGAAATAATCTGTAGTAGCAACAG----------------------------------------------CTTGCTTTT-CAACTCTTCAAAGCACCCTTCTCCA----GCTCATCACAG----CTTCCAGTGAGAATC-ATCCAAGGAGTCTT-------------------TATCCCTCATCCAGAAATGCAGAGAATATGT s panTro1.chr19 42873955 436 - 82489036 CTTTTAGATTTGGGCA-TAGCTTGATAGACAACCACA-----CATGCAGAT-TCCCCCCTCCTTCGTGTCTATTCGCCTGTTTATAAAATGGAGTTAATCAATAA--TGACCAATAATTTAATAAA--TATCatcaactcatttaatcctcacaaccccatcatgaagtagatattattaatagccccatttcacagatgaggaaactgctgggcagaa-aatttaactgactcatccatgccgcacaataATGGG-ATTGAATTATCAGTACTTTTATTTCCTT-AGAAAGGTCAAATAGCACCTGATA--------------CAAGAAC----AGAAATAATCTGTAGTAGCAACAG----------------------------------------------CTTGCTTTT-CAACTCTTCAAAGCACCCTTCTCCAGCTTGCTCATCACAG----CTTCCAGTGAGAATC-ATCCAAGGAGTCTT-------------------TACCCCTCATCCAGAAATGCACAGAATATGT s mm5.chr11 22466139 482 - 121648857 CTTGTAAACTCTGACATTAGCCTTATCAATGACCTCACCCCCCAGACAG----CTCCTCTTCCCCATGTCTATCTACATGACTCTAAAATGGGATAAGCCAAT---------AATACATTAGCAAAGTTTTTTTTAACTCATTTGATGATCACACAGCCATCATAATGTAGCTACTACCAATAATATCATTGAACCGTTGGAGAAACCACTGGTTACAG-ATGTTAGC--ACTCA---GAGTTGCACAATAATGAGTGATGAAGTCTAAGTGCTTTAAATTCCCT------TGTTGTATGATGTATTATG--------------CAGTCTCCTCTAGCAGAAATCCACATTAGCTTTAGTGGGTGGTTTTGGGGGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTT-CAGCTCTTCTGAGTTCCATTCCCAC---------TTGCTG----TCTCTAATGAGAAAC--CAAAATGAACCTTGTGTCATTAGCACCCACAGTCCTCTTCACCCAT--GTTCACGGGCTAGGT s canFam1.chr9 14393670 473 + 53642819 CTTTTAAGCTCTGACACTAGCTTGATAGATGACCACG-----CTCACAGACAATTCCTCCTCTACATATCTATCCATGTGTTTATGAAGGAGGATTAATAAAAAAGCTAAGAAGTAACTCATTTAA--TA--actaattcatttaatcctta-----ctaccacggaagagctaccactaatattcccatttaacagataaagcaactaatgggtaaagcaattcaatgttttccccagtgtcacacaataataag-ATTGAATTTTAAGTACTCTGATTTCCTTAAGAAAGTTAAAATAGCACGGGATACATTTCACAGTCTCCAAGAAT----AGAAGCAATTCACAGTAGCAACAG----------------------------------------------ATTATTTTTCCAACTCTTCAAGGAACTATTCTATAGCCTGCTTGTCAATGATTCATTCCAGTGAGAGACCATCCAAGGAATCTA-TGATATTAGCCTTTGTCATTCTTTTTGTCCAGAAATTCATAGACTGAGT a score=367.0 s hg17.chr17_random 2605659 3 + 2618010 GGA s panTro1.chr19 42874391 3 - 82489036 GGA s mm5.chr11 22466621 3 - 121648857 GAG a score=27389.0 s hg17.chr17_random 2605662 142 + 2618010 TTTTTGAATGCGGAAGGTA-TTGGATGGCAGCTAATAGC-ATTTTTAATGTGAGAGATGGAGAATCTGGGGCACAGAAAGAACAGTAACTGGTCCATGGTACGTGGGTCGAAAAGAGGACC----AGTGCTCTTTCTTCTGCTCCTCA s panTro1.chr19 42874394 146 - 82489036 TTTTTGAATGCGGAAGGTA-TTGGATGGCAGCTAATAGC-ATTTTTAATGCGAGAGATGGAGAATCTGGGGCACAGAAAGAACAGTAACTGGTCCATGGTACGTGGGTCGAAAAGAGGACCAGTGAGTGCTCTTTCTTCTGCTCCTCA s mm5.chr11 22466624 123 - 121648857 CTTTAACATTAGAAAGGGGTTTTAATAGCAGCTAGTTGG-CTTCTTCGTGTCACA----GAGAATTGAGGACCCAGAGAAAAAGGCAACTGGACAATG---------------AGAAAATC--CAAG---TCTTTCTTCTACTTCACA s canFam1.chr9 14394706 142 + 53642819 tttgaaaATTAGAAAGATT-TCTGATGACATCTAATAGCTTTTTTTTGTATCAGAGGTGAAGAA-ATGGGGTCCACAGACAAAGGAGATTGGTCCATGACTCAT-AGTCAGTAAGAGAATC---CAGTGCTCTTTCTTCTACTTCTCA a score=0.0 s hg17.chr17_random 2605804 39 + 2618010 CTCTCCTTGTTCCCCGTCTTCTGCTCCTCACTCTCCTCG a score=750.0 s hg17.chr17_random 2605804 29 + 2618010 CTCTCCTTGTTCCCCGTCTTCTGCTCCTC s panTro1.chr19 42874540 29 - 82489036 CTCTCCTTGTTCCCCGTCTTCTGCTCCTC s mm5.chr11 22466747 4 - 121648857 TCCT------------------------- a score=1530.0 s hg17.chr17_random 2605833 10 + 2618010 ACTCTCCTCG s panTro1.chr19 42874569 10 - 82489036 GCTCTCCTCG s rn3.chr10 22261996 10 - 110733352 ACTCTTCTAT a score=21742.0 s hg17.chr17_random 2605843 84 + 2618010 TTC----CCAGGCACATCTGTAGTGAACA--GGTGTGGACTGA-------ggcctaatgt-gaagaacactggacc----ccaagacagtgacctcaggctc s panTro1.chr19 42874579 84 - 82489036 TTC----CCAGGCACATCTGTAGTGAACA--GGTGTGGACTGA-------GGCCTAATGT-GAAGAACACTGGACC----CCAAGACAGTGAGCTCAGGCTC s mm5.chr11 22466751 91 - 121648857 ----------AACACATCCACACTAGACAACAGTAAAAACCAAACAGGAGGGTCTAATGG-AGTCAACCCTGAGCCAACTACAAGTCACTGGTCTCTGATTC s rn3.chr10 22262006 101 - 110733352 TTCGCATCCCAACACATCCACACTAGACAGCAGTAAAAACCAAACAGGAGGGTCTAATGG-AGTCAACCCTGACCCAATTACAAGACATTGAACTTGGGTTC s canFam1.chr9 14394848 85 + 53642819 TTC----CCCACCACATCTGGAGTAGACAGCACTG-GAACTG--------GGTTTGATGGAAAACAAAATTGAACC----ATCAGGCAGTGACCTTCCATTC a score=91.0 s hg17.chr17_random 2605927 1 + 2618010 t s panTro1.chr19 42874663 1 - 82489036 T a score=142566.0 s hg17.chr17_random 2605928 407 + 2618010 aactctcagaagtaccatttggcttctctgtgcttagactct-gggcagtcaccatggactcttcaaagcttacgtccttagtttcTCTTACAAGC----------TCTGACATTACTTATCATGTCTAGCTTTCTACCTCTGTAAATAAGAACTGACACCAAAAAAAGTCTTCCAACCC---CCCCCACCCCACTTTGCC-----AGTGTCTTTT--AAAGGCAATTGGATGGTATCAGTGAGATCTTCATG-TCTTTAGAAGATA---ATGACTCTATGTTGTTATTAATTCCCATAATTTCCATTTTTCAAACAATGAAGAAAAGTATCTTACTCTAGACAGAAAC--GGATCCCTTACCTGAGTAAGTTTATCCTATTTCTGTCCATTTTGATTTAAAATTAAAGTTTT-TATAATGAAAACACA-TTTTAA s panTro1.chr19 42874664 410 - 82489036 AACTCTCAGAAGTACCATTTGGCTTCTCTGTGCTTAGACTCT-GGGCAGTTACCATGGACTCTTCAAAGCTTACATCCTTAGTTTCTCTTACAAGC----------TCTGACATTACTTATCATGTCTAGCTTTCTACCTCTGTAAATAAGAACTGACACCAAAAAAAGTCTTCCAACCCCTGCCCCCACCCCACTTTGCC-----AGTGTCTTTT--AAAGGCAATTGGATGGTATCAGTGAGATCTTCATG-TCTTTAGAAGATA---ATGACTCTATGTTGTTATTAATTCCCATAATTTCCATTTTTCAAACAATGAAGAAAAGTATCTTACTCTAGACAGAAAC--GGATCCCTTACCTGAGTAAGTTTATCCTATTTCTGTCCATTTTGATTTAAAATTAAAGTTTT-TATAATGAAAACACA-TTTTAA s mm5.chr11 22466842 406 - 121648857 -AGTCCCAGAGGCATCACTTGCCTTCTCTCTG--TATGTTCTAGAGTGTTCATCATAGACTCTTCAAATCAAATGTCCTTGGCTTCTCTTATAAACACATATGGGATTTGACTCACCCTGTTGTGTCTAGTCATCTATATCTATAAACAGGAGGTGATGCCAGAAA--------TAACAA---CCTCAAACTCCTCTTCCA-----GGTATCTTTT--AAAGGCCA-TAAATGCTGTCGGTGATCTCTATATGATTTTTAGCAACTAGATATGATAGTGTCTTACTA-TAACTCCC-TGATTTCCGTGTAGCTAGCAATG-AGAAATGTATCTTACTCTAGGATGAAAT--GAGCCTATTTCTTGGCTAAGTTTATCCTA-ATCTGCCCATTTT-ATTTAAAAGGAAAGTTTTCTCTAATGAAAAAGCA-TTTTAA s rn3.chr10 22262107 409 - 110733352 -AGTCCCAGATGCATCATTTGCCTTCTCTCCA--TATGTTCTAGAGTGTTCATCATAGACTCTTCAAATCTAATATCCTTGGCTTCTCTTATAAACACTAATGTGATCTGACTCACCCTGTTATGTCTAGTCATCTATATCTATAAACAGGATGTGACGCCAGAAA--------TAACAA---CTTCAAACCCCTCCTCCA-----AGTATCTTTT--AAAGGCTA-TAAATGTTTTTGGTGATCTCTATATGATTTTTAGCAACTAGATACGATAGTGTCTTAGTA-TAACTCCCTTGATTTCCACACAGCTAGCAATG-GGAAATGTATCTTACTCTAGGCAGAAATGAGAATATTTTTCTTGGCTATGTTTATCCTA-ATCTGCCCATTTT--TTAAAAAGTAAAGTTTTCTCTAATAAAGAAGCATTTTTAA s canFam1.chr9 14395089 362 + 53642819 AGTTCTTAGAAGCATCA-TTGACTTCTCTGCGCTTAGAC-CT-GG-----------AGATTTTTCTGATCTATTATCTAAA---TCCCTGATGTTC---------------CTCACCTTATTGTGTCTTGCCTTCTGCAACTGTAAATAGAAAATAGCATCAAAGA--------TAACAT---CCTCCAATTCCTTCTCTCTCTGAAGTCTTTTTTAAAAAGGCAATCAGATGCTATTGATAAGATCTTTAAGTTTTTTAGAAGCTA---ATTATTGTATGTTCTTC-TTAT-----TGATTTTCATGTATCAAACAATGGATAAAAGTGTATTGCTC-------------------ATTGCATGAGTAGGTCTACCCTAATTCTGTCCATTTTGATTTAAAATGCAAGTTCT-GATGATAAAGA-GCA-Ttttat a score=3065.0 s hg17.chr17_random 2606335 19 + 2618010 AAGCAAACATCCACTTTAA s panTro1.chr19 42875074 19 - 82489036 AAGCAAACATCCACTTTAA s mm5.chr11 22467248 9 - 121648857 AGGCAAAT----------G s rn3.chr10 22262516 19 - 110733352 AAGCAAATGTACTCTTCAG a score=512089.0 s hg17.chr17_random 2606354 1333 + 2618010 ATGAGAG------AAGGGGGGAA--ACATTAAAATTCAAGAGAAAAGGAAAGTGTCCC---CAAAGAGAAGAGAATAGGTCATTATTAGGTTAGGAAGAATTTCTAGGCTGAGGCAATCAGCATCCGTGACACAGA--CTTGGGTTAGTCTCAGGGCAAGCAAACCTTGAATA----CATTGTTTCAACACTGTGATCAAATGTCTTTTATAGGAAATGAATCCTCTGGGTATTGGGCTGGCTAGAAATATCTGATCAGTGTGTTCATGAATGATTCACAAGTTTCATGGGAACAACCCACGCACCCAGTTCAAATGGGAACAAC----CCTGTTTGGCAACATT-GAAAGGTTTGCTGTAATT------ATCCTTTCAGGTTAAACATCATATTTGGAGAG-CTTTCCTAGGTGATGCTTTTGAGCCACAGGCTACCACTTACATGCACATGGGAAAAAAT---GTATATCAATG-----TTTCTAA-ACATCTTAA-GAAGGCATCA-CAATAGCAAAATTTCTGAATATGTTTTCT---TGATCctctctc---------tctctctctctctctctctctttctctctctcaccccccccccctctttc---tctctctctGGAACAACCCAATAG-------TCAAGGCGGACATACTAGTCGTACCTGGAGAAAACATCTCAGACAGTAAGATCTCTTACTTTTTTC-AGGAGGAGAGCAAGTTTGGGACTCCTTTCTCTTTTTCCTTCTCcaaaaacaaacaaacaaaaaaaacagaaacaaaaaagaatcaaaaaGGCCTTTCTGCTAATCCAGAAGCAAAAATTTCCGATATTACAGCTCGTTATGGAGGGCCACTGGG-CACGCTAGTGCTCAAGAGT-TTCCTGGAAAGGGTTGTATCCACCCATTTGGTATCTGTGGCCCTTAAAGAAACTGCCTAACTCTACTGACCCAGAAGACCTAGAGAGAGACCATGCTTTGGGCTGAACATCTCTAAACATGGGTAGCTGGTCATAAAGAACTACCCAT---CAAC-TGTATGTAAGAGTAAAAAGGTCTTCTCTCTGCACTTCTGTGGAGGATAAATGTCTGTCAGCTCAT-TTTCCATTGACC--------------GGAAAAAAATAACTGTGTTCTCTTCCTTCACTGCCACTTTCTAAGAAA-CACCCCCTTCCCCACTCCCAGCATAGACTC--TGGTTGCAGGGAGAAGTCTCACAGTGGAAGGTAAAT-AAAATTACTACCCATGTAAGAGGACTCTGTTAAGTTCAGTGGGGAAAGGAGACTAGGATGAAATCTCAGAACAAGCA--CCCTTTTAA------------AGGTATTAGAAAAACCTAGAAAAGAACTTTGGCCACCTTTGTTTAAAAAGcagaatcatgtactgattaataacacatac s panTro1.chr19 42875093 1329 - 82489036 ATGAGAG------AAGGGGGGAA--AAATTAAAATTCAAGAGAAAAGGAAAGTGTCCC---CAAAGAGAAGAGAATAGGTCATTATTAGGTTAGGAAGAATTTCTAGGCTGAGGCAATCAGCATCCGTGACACAGA--CTTGGGTTAGTCTCAGGGCAAGCAAACCTTGAATA----CATTGTTTCAACACTGTGATCAAATGTCTTTTATAGGAAATGAATCCTCTGGGTATTGGGCTGGCTAGAAATATCTGATCAGTGTGTTCATGAATGATTCACAAGTTTCATGGGAACAACCCACGCACCCAGTTCAAATGGGAACAAC----CCTGTTTGGCAACATT-GAAAGGTTTGCTGTAATT------ATCCTTTCAGGTTAAACATCATATTTGGAGAG-CTTTCCTAGGTGATGCTTTTAAGCCACAGGCTACCACTTACATGCACATGGGAAAAAAT---GTATATCAATG-----TTTCTAA-ACATCTTAA-GAAGGCATCG-CAATAGCAAAATTTCTGAATATGTTTTCT---TGATCctctctc---------tctctctctctctctttctc--tctctctccccccacccccccttctttc---tctctctctGGAACAACCCAATAG-------TCAAGGCGGACATACTAGTCGTACCTGGAGAAAACATCTCAGACAGTAAGATCTCTTACTTTTTTC-AGGAGGAGAGCAAGTTTGGGACTCCCTTCTCTTTTTCCTTCTCcaaaaacaaacaa--aaaaaaaacagaaacaaaaaagaatcaaaaaGGCCTTTCTGCTAATCCAGAAGCAAAAATTTCCGATATTACAGCTCATTATGGAGGGCCACTGGG-CATGCTAGTGCTCAAGAGT-ATCCTGGAAAGGGTTGTATCCACCCATTTGGTATCTGTGGCCCTTAAAGAAACTGCCTAACTCTACTGACCCAGAAGACCTAGACAGAGACCATGCTTTGGGCTGAACATCTCTAAACCTGGGTAGCTGGTCATAAAGAACTACCCAT---CAAC-TGTATGTAAGAGTAAAAAGGTCTTCTCTCTGCACTTCTGTGGAGGATAAATGTCTGTCAGCTCAT-TTTCCATTGACC--------------GGAAAAAAAAAACTGTGTTCTCTTCCTTCACTGCCACTTTCTAAGAAA-CACCCCCATCCCCACTCCCAGCATAGACTC--TGGTTGCAGGGAGAAGTCTCACAGTGGAAGGTAAAT-AAAATTACTACCCATGTAAGAGGACTCTGTTAAGTTCAGTGGGGAAAGGAGACTAGGATGAAATCTCAGAACAAGCA--CCCTTTTAA------------AGGTATTAGAAAAACCTAGAAAAGAACTTTGGCCACCTTTGTTTAAAAAGcagaatcatgtactgattaataacacatac s mm5.chr11 22467257 1282 - 121648857 ATAAGAGGGAATTAAATGGGGAA------TAAGGTTCAGAAACAAAGTGAAGTGTGTCACACACACAAAAGAAAAATGCTCATT------TTAGGAAGAAGTCATGGGCAAAAAGAATGACCATCCAAACTACAGAGCCCTGGGTTAGCATCAGCACAGACAAGCCTGGTATGTGTTCATTGCTTCAACACTGTAATCAAATGTCTTTTATAGGAAATGAATCCTTCCCCTATTTGACTGGCTGGAAATACCTGGTCAATGTGTTCATGCAGGATTCAC-AGCTTCATGGGAACTACCCACGCATGCAG-GCAGAGGGGAGCAAC----CGTGTTTGGCAACAGCAGGAAGGTTTGTTTTAGTTGGAATGATCCTTTCAGGTTGAGCATCATGCTCGGAGAGTTTTTCTTAGGCCATGCCTTCAAGCTATAGGTCACCATTTCCAGGCACA-GAAAAACAAC---ATAGAAAAATGCCAGTTTTCTAAGACACCTCAATAAAGGTATCA-CAGAAGCAAAGTTCCTGAAAAAGTTCTCTGTGTCGTCCTTTCTCAGAATCTG-TTCCTTGCCTTTTCTCTCTC--CATCCTATCCACTCCCTAACCTTCTCCCCCTTCTCTGTCTTGCATGATGCAACAG-------CCGAGA-AGACATACTGGTATTTCCTGAAGAAACTA--------------------------------------------------AGCTCCTTTCCCTGTGTCCTTGT------------------------CATAAGGAAAAAATAATCAAGTCCACCTTCCTCCTAAGGCAAAAGCAAAAG--TCTGCTATCATAGCTCCTTATGGTGACCCAGTGGGACCAGCAGGTGCTTCAGAGTCATGCTGGAGATGGCTTTAC---TTCATTTGGTATCAGAGGTACTTGGAGAAGCCACTTAAC-CTACTGACCCAGAAAAGTCGGGAAGAGACAGCATT------------TATCTGAAGCTGTGT--TTGGTCATAGAACACTATCT-C---CAAC-TGTAGGTAACAGTACAAGAGTCTTGTCTGAACA------TGAGTGGGCATTGCTGATGGGTTTATGTTTCCACTGACCAACCAG---AAAAAAAAAAAAAAGAACTGTGCCCTCCTGCTTCACTGTCACTGCCTGAGAAA-CACCTGC-CCTGCACT-GCAGTGT-GACCT--TGATTGAAGAGAGAAGTCACAAGGTGGAAGGCAAAT-AAAGCTACAGCCTACTCAAGAGGAATCTG-AAACCTGAATAGGAGAAGGAGACTCAGACAAAGATCCAGAAGAAGCG--CTCTAGAAAACCCTAGAAGTGAGACATTAACAATAGCTAGAAGAGATC-ATGCCCATGTCTGGTCAAGAAGCTGAAACATGCACTGATTAAGAACAAATAC s rn3.chr10 22262535 1272 - 110733352 ATGAGAGGGAATGAAAAGGAGAA------TACGGTTCAGAAACAAAGTAAAGTGTGTC--ATACACTAAAGGAAAT-GCTCATT------TTAGAGAGAACTCATGGGCTAAGACAATGAGCATCCAAACTACAGAG-CCTGGGTTAGCATCAGCACAGACAAGCCTGGAATGTGTTCATTGTTTCAACACTGTCATCAAATGTCTTTTATAGGAAATGAATCCTTCACCTATTTGGCTAGCTGGAAATACCTGGTCAATGTGTTCATGCAGGATTCAC-AGCTTCGTGGGAACTACCCACGCAGGCAG-GCAAAGGGGAGCAAC----CCTGTTTGGCAACATCAGGAAGGTTTGTTTTAATTGGACTGATCCTTTCAGGCTGAACATCATGCTTGGAGGGTTTCTCTTAGGCAATGCCTTCAAGCTATAGGTTACCATTTCCAGGCATG-GAAGAACAAC---ATAGA--AATGCCAATTTTCTAAAACATCTCGATAAAGGTGTCA-CAGAAGCAAAGCTTCTGAACAAGTTTTCTGTATCATCCTTTCTCAGACTCTGTTCCCTTTCCTTTTCTTTCTC--CATCCTCTCCACTCCCTAACATTTTCCTCCTTCTCTGTCTTG-------CAATAG-------CTGAGA-AGACATACTGGTATTACCTGAAGAAACGATCTAAGA----------------------------------------------TCCTTTCCCTGTGTCCTTCTCGGA-----------------------AGAAAAATAATAATCATGTAGGTCTTCTTTCTAAACCAGAAGCAAAAA-GTCTGCTATCATAGCTCTTTATGGTGACCCAGTGGGACCATCAGGTGCTTCAGTGTCATGCTGAAGATGGTTTTAC---TGCATCTGGTATCCAAGGACCTTGGAGAAGCCACTTAAC-CTACTGACCCAGAAAAGTCAGGAAGAGATTGCATT------------TCTTTGAAGCTGTTC--TTGGTTGTAGACAACTATCTATGCACAAC-TGTAGGTAAGAGTACAAGAGTCCCATCTGCACA------TGAATGGGGATTGTTGATAGACTTATGTTTACACTGACCAACC----------AGAAAAAAAGAACTGTGCCTGCCTGCTTCACTGTCACTGCCCAAGAAA-CACCTGC-CCTGCATT-ACAGTGG-GAACC--TGGTTGAAGAGAGAAGTCCCATGGTAGAAGGCACAT-AGAACTACAGCCTATTCTAGAGGAATCTG-AAACCTGAACAGGAAAAGGAGACTA-GACAATGATCCAGAATAAGCG--CTCTAGAAAACTCCAGAAGTGAGACATTAGCAAAATCTAGAAGAGAGT-GTGCTCATGTCTGGTCAAGAAACAGAATCATGCACTGATTAAGAACAAATAC s canFam1.chr9 14397118 1295 + 53642819 --GAGAA------AGAAGGAGAAAGAGATTAAAATTCAAGAGAAACAGAAAGTGTCCC--AGATGAGAAAGAAAGAGCACCATC--CATGTTAGAAAGAATTTGTAGGCTGAGGCAACCAGCGTCCATGACACAACG-CCATGCCTAGTATCAGTGCAAGCAAGCCTGGAATG----CACTGTTTCAACACTGTAATCAAATGTC-TTTATAGAAAATGAATCTTTTGGCTGGTTGGCTAGCTGGAAATATCTG----GCGTGTTTCTGAATGATTCACAAGCTTCATGGGAACAACCCACGCACCTAGTTCAAATGCGAACAACCAATCCTATTTGGCAACATTGGAAAGGTTTA-TGTAGTC-AAATGATCATTTCAGGTTGAGCATTATATTTGGAGGG-TTTTCTTATATGATGCTTTTAAGCCACAGGCCACCACTTATATGAACATAAGAAAATATATAATATGCCAATG-----TTTCTAA-ATATTCCAGTTCAGGTGTCACCAGTAGCAAAGTTTCTAAGCACACTTTCT---TGCTGTTCCCAC---------CAcctccctcccctctcctc--tcccttcttctctcc---------ttcc---tctcTGTCTGGGACAACATAAGTGGTGGATATCAAGGTGAACATATTGGTGGTACCTGAAGTAAATATCTGAGATTAAAGTTTATCTTACTATTTCCTAGAAATAAAGCAGGTTTGTGGCTCTCTTCTTTGTGTCTTTCT---------------------------ATAAAGAAAAAAATCAAAAA--TCCTTCTTCTAAGCCAGGGGTGAACC-CTCTGCT-TTATAGCTCATTGTGGTAGCCCATTGGGCCCAGCAAGTGCTTGAGAGTTACCCTGCAGAGGACAGTACTTACCTACTTAATACC-----------------------AACTCTACTAAACCAGAAGAGCTAGG--GAGACCACATTTGGGACTGAATTTCTCCAAATCCATATAGTTGATTATAGAGAACTGCCTATCCCCAACTTGTTTGTCAGGATAGAAAGGTCTTCTCTTTGCC----------CCATAAATGTTTTTCAGCTCAT-TTGCCACTGACCCATCAGAAAAAAAAAAAAAAACATAAGTGTGCCCTCCTCCATCACTGCCACTCTCTGAGAGACCACCTTCCCCAACACT--CAGTATAGCTTTTGTGGGTGCAGAGAGAAGTCTCACAAGGAAAGGCAAATAAAAATCATAGCCCATTTAAGAGAACTCTG-TAACTTGAGGGAGAAAAGGAGACTAGCGTGAAAATTCAAGACAAGTGGTGCCTACTA-------------AGGCATTAGAAAAAGCCACAAGAGAACACTGGCCACTTGGGGTCAAGAAGTACAACCAcatgctgatttggaacagattc a score=150868.0 s hg17.chr17_random 2607687 399 + 2618010 ttgaatctagaccagctgggtctctgatt-cccagccctgccacataccatgagatcttgggcaagttacttaatctctc------tatttcctcatctttaaaatggggctattaatagcatctacttcatagggctgagatgacatcattaattaatgcatgcaaagctcctagagcatgcctggcacccagtaaCCTTGTTAGTAGGATTGCATTATACTGCTTCGTGAAGCTTAC-TTCAGTTGGCAAAACAATCACATGAGAGCTAATGAATTATTTCACTTGAGCCAAATGACAATGGCATAGTCATGC-AAAGCCATTCTGATAAC-TAATGAAAGTGCTATATTAAGGATAGAACCTTTCTTTTT----------------------AAAAGAAAGCTGAGTCAC-------------ACCTG-----------------------------ACCCAAAGTAAAA s panTro1.chr19 42876422 399 - 82489036 ttgaatctagaccagctgggtctctgatt-cccagccctgccacataccatgagatcttgggcaagttacttaatctctc------tatttcctcatctttaaaatggggctattaatagcatctacttcatagggctgagatgacatcattaattaatgcatgcaaagctcctagagcacgcctggcacccagtaaCCTTGTTAGTAGGATTGCATTATACTGCTTCGTGAAGCTTAC-TTCAGTTGGCAAAACAATCACATGAGAGCTAATGAATTATTTCACTTGAGCCAAATGACAATGGCATAGTCATGC-AAAGCCATTCTGATAAC-TAATGAAAGTGCTATATTAAGGATAGAACCTTTCTTTTT----------------------AAAAGAAAGCTGAGTCAC-------------ACCTG-----------------------------ACCCAAAGTAAAA s mm5.chr11 22468675 356 - 121648857 TTGAATTTAGACAAGCTGGG--TCTGATT-CCCAG------------CTGTGAGATCCTATGGGAGTTACTTAACTTCTC------CACTCTACTTCCTGTATAATGGGGCTATTAATAGCATGCACTTCATAGTGTTGGGGTGACAACATTAATTAATGTATACAAAGCACTTAGAGCATGTCAGACACCCCATAACATTATTAGGAAGGTGTCCTTTTGATGTTTTGAAGAACTTACATTCCATTGGTAAAACAAACACCCTAACCCTTACAAGTTATTTCACTTAAGCTAATTGACAACACAGCAGTCAGCC-AAAGTCATCCTAACTAC--------------------------------TTCCTTCC----------------------ACTAGAAAGTAGAACCAT------------GGAATG-----------------------------GCCCAAAGGAAAA s rn3.chr10 22263937 338 - 110733352 TTGAATCTAGACAAGCTGGA--TCTCATTCCCCAG------------CTATGAGATCCTATGGGAGTTTCTTGATTTCTCCA-CTTCACTTCCTTGTCTGTATAATGGGGCTATTAATAGCATGTACCTCATAGTGTCAGGGTGATGACATTAATTAGTGTATGCAAAGCACTTAGAGCATGTCAGACGTCCCATAAC-----------------------ATGTTTGGAGGAACTCACATGCCATTGGTAAAACAAACTCACTAGCACTTACAAATTATTTCACTTAAGCTAATTGACAACAGAACAGCCATCC-AAAGTCATCCTAACTAC--------------------------------TTCCTTCC----------------------ACTAGAAAGTGGAACCAT------------GGAATG-----------------------------ACCCAAAGGCAA- s canFam1.chr9 14398413 457 + 53642819 atgaagccagaccagctggg--tctgatt-ctcagccctgccacctactgtgagatcttgggaaagttactaaacctctgtatctccacttcctcatctttagaatgaggctattgataatatctacttcatagggttggcatgattacattaatgaatgtatgcagagctcttag-gcatgcctggcacctagtaaCATTGTGAGTATGATTTCATTGTGCTGCTCTAAAACACTTAC-CTCC-------AAACAGTCACACTCAAGCTAGTGAAGTACTTCATTGGAAC----TGATAATGACATTGTCAAGCAAAAGCCATCCCAATAATTTAATAAAAGCACCAGATTAAGGATGGGACCTTTCtttttttattttactatttattttttaaGGAAAAATTGTATCTATTTAAGATGTTTTGACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgCGCATAGGGAAA a score=3928.0 s hg17.chr17_random 2608086 15 + 2618010 ACCACATAAAGGTCC s panTro1.chr19 42876821 15 - 82489036 ACCACATAAAGGTCC s rn3.chr10 22264275 15 - 110733352 ATGGAGCACAGGTCC s canFam1.chr9 14398875 15 + 53642819 ATCACATGTAGGCCC a score=1430.0 s hg17.chr17_random 2608101 6 + 2618010 AACTCT s panTro1.chr19 42876836 6 - 82489036 AACTCT s canFam1.chr9 14398890 6 + 53642819 AACTTT a score=524.0 s hg17.chr17_random 2608101 7 + 2618010 AACTCTT s canFam1.chr9 14398890 7 + 53642819 AACTTTT a score=273.0 s hg17.chr17_random 2608107 1 + 2618010 T s panTro1.chr19 42876842 1 - 82489036 T s mm5.chr11 22469084 1 - 121648857 T a score=73661.0 s hg17.chr17_random 2608108 201 + 2618010 CTGTTTTCCAGAATGTTAGGGAGCTCAGTTGTAAAGGACCTCTCCATCATGTATCAACCTTCACAATCTTTG-CGGCCAGTAGGAAGAAGATAGCCCTGGAGGAGAAGGGAGAACAGTTTGAAGTCATCCCTGT-A---ACAGGATCACTTTTGTGGACAACTGAAATGACAGGGCAATTCAGAGAGGACT----GATGGCCCTTCT-CCT s panTro1.chr19 42876843 201 - 82489036 CTGTTTTCTAGAATGTTAGGGAGCTCAGTTGTAAAGGACCTCTCCATCATGTATCAACCTTCACAATCTTTG-CGGCCAGTAGGAAGAAGATAGCCCTGGAGGAGAAGGGAGAACAGTTTGAAGTCATCCCTGT-A---ACAGGATCACTTTTGTGGACAACTGAAATGACAGGGCAATTCAGAGAGGACT----GATGGCCCTTCT-CCT s mm5.chr11 22469085 207 - 121648857 CTCTCTCTCAGAATGTCATGGAATTCTTTTGGAAAGGTCTTCCTCCAAATA-ACTAACCTTCAGATTTCCTA-CAATCAACAGGAAGAAGAT-GCCCTGTCAAAAGAGAGGGACAATCTTGAAGTCAGTCCTGC-ACTTACACAATCAGTATTGTGGAAATGAGAAAGAGCAGGGCAGCTCAGATGGGTCTGTGAGGCTGCCCTTCTCCCC s rn3.chr10 22264290 165 - 110733352 CTCTCTCCCAGAATGTCATGGAATTCATTTGGAAAGGTCCCTA---------ACTAACCCTCAGATTTCCTA-CAATCAACAGGAAGGAGGT-GCCCTCCCAAAGAGAGGGGACAAGTTTGAA------------------------------ATGGAAATGAGAAACAGCAGGGCAGTTCATATGGGTCT----GTCAGCACATTA-TCT s canFam1.chr9 14398897 202 + 53642819 CTATTTTCTGGAATGTGATGGAACTCAGTTGAAAAGGACCTCCCCATAATATATCAACC-TCATACTCTTTGTCAGCCAATAGTAAGAAGACGGCCCAGGAAGAGGAGGGAAAACAGTGTGAAGTCAGCCCTATGA---ACAGGATCACTTTTGTGGAGATTGAACATGACAGAGCAGCCCAGATAGGACT----GGGGGCCCTTCT-CCA a score=81480.0 s hg17.chr17_random 2608309 410 + 2618010 AGTACAATATCTGTTACCCTTGTCTCTTGTGGCCCTGATGTTTCCTGGAGTCAGGTTATGGTGTCAATGGAGAAAACAGCTGGAAGG--------------------------------CTTCTCC-------------ACCGCCAACACATAATAAAAGTAATCACAGATGCACAGAAGCCACAGTGTCTCCTAGGGCCAAAAAGTAGAAAGAGTAATGCTtctttcattcaattaaaaactgattaaatattatgcctctagacattgtgctacatgctttacatgaattatctcactcaattctcacaatggccctaccatactatggttattaccacattactaacaagtgaactaaggcttacagaagttaagtaatttgctcagtgtc--acagctagtaaatgttaaagtcaaaatctgaacaaactcaaatcctcta--ttccaaatgccc s panTro1.chr19 42877044 410 - 82489036 AGTACAATATCTGTTACCCTTGTCTCTTGTGGCCCTGATGTTTCCTGGAGTCAGGTTATGGTGTCAATGGAGAAAACAGCTGGAAGG--------------------------------CTTCTCC-------------ACCGCCAACACATAATAAAAGTAATCACAGATGCACAGAAGCCACAGTGTCTCCTAGGGCCAAAAAGTAGAAAGAGCAATGCTTCTTTCATTCAATTAAAAACTGATTAAATATTATGCCTctagacattgtgctacatgctttacatgaattatctcactcaattctcacaatggccctaccatactatggttattaccacattactaacaagtgaactaaggcttacagaagttaagtaatttgctcagtgtc--acagctagtaaatgttaaagtcaaaatctgaacaaactcaaatcctcta--ttccaaatgccc s mm5.chr11 22469292 256 - 121648857 AGCACAGTATCTGGTGTCTTTGTTCTTCCTGGTCTCGGTGTTCATTGAAACCAGGTT---------ATAGAGAAATCAATAGGAGGG--------------------------------ATCCT---------------------------------------------------------------------------------GCGGAA--------------------------------------------------------------------CGTCCCACGGATGATCTCACTTACCTCTCAAGATTCCCCTGTAATGCTGTCATTATTTACACA--GCTACCAACTGAACCAAGGCTTTGAGAAGTCAACTAAC---CTCAATGCCTTGCAATTAGTACATGGCAAGGCCAAAATTTAAA------CAAATTCTATA--CTCCAAATGGCC s canFam1.chr9 14399099 448 + 53642819 AGAACAGATTCTGCTGCCCTTATCTCTCCCAGCCCCAATGTTCCCTGGAGTCAGGTTATGGGCTCAACAGAGAAAGTAGCAGGAAAGTAGCAGTAGTAGGAGGAAGTCTCAAAAAAAAACCTGTCCCAATTAACACAGAACAATCAACACATAATCAAAGCCATGA------GACAGAAGCCACAGATCCTCCTATGGTCAACAAGTAGAAAGAGTAATGCTTCTTCTAGCCAACTGAAAATCAGTTGACtattatgcctc-agacactgtgctcagtgctgtacctgagttagcttgctcaatcatcacaacaaccttacaatgatattattatccccacttcaccaataagtgaactaaggcttacagaagttaactaccttgctcagcatc--aca--cagtaaacagtcaagtaaaaatttgaacaaattcgtgtcttccattttccaaatgccc a score=0.0 s hg17.chr17_random 2608719 3 + 2618010 AAT a score=273.0 s hg17.chr17_random 2608719 3 + 2618010 AAT s panTro1.chr19 42877454 3 - 82489036 AAT a score=38689.0 s hg17.chr17_random 2608722 281 + 2618010 CAATTAAATAATTACTCAAGTTTGAAAATGTCATACA--TGTAGCCTAATGAAAGCTATAAAGAATTAAAGAAATAATGCTTGTCTTGGAGGTCTAAAGAAGGTGAGCCATATCCCTGGTGGTTCAAGTGGTTAAGAAAATATTTTAAAAAGAGAAAGTGAGCCCTAAAAACACAACACAACAGTG------TCCAGCCCAATCCAGGAAGGGGCAACACTGAACTCATGAACACCATCTAAGCACGTGTGGACTTGAGGCAGTTTTTCA-ACCTCATTCCTCAAGACCC s panTro1.chr19 42877457 281 - 82489036 CAATTAAATAATTACTCAAGTTTGAAAATGTCATACA--TGTAGCCTAATGAAAGCTATAAAGAATTAAAGAAATAATGCTTGTCTTGGAGGTCTGAAGAAGGTGAGCCATATCCCTGGTGGTTCAAGTGGTTAAGAAAATATTTTAAAAAGAGAAAGTGAGCCCTAAAAACACAACTCAACAGTG------TCCAGCCCAATCCAGGAAGGGGCAACACTGAACTCATGAACACCATCTAAGCACGTGTGGACTTGAGGCAGTTTTTCA-ACCTCATTCCTCAAGACCC s canFam1.chr9 14399547 223 + 53642819 tggtt--ctaatcactCAAATTTGGCAGTATTATATATTTGTAGCCCAATCAAAGGCACAAATAGTTAAAGAAAT-GTGTTTGTCATGGAGTTCTGAAGAAG-------------------------------------------------------GTGAGCTCTAAAA--GCAACTCAACAGTGTTTATATCCAGCCCAATCTGGAAAGATGGGACATTGTATCCA-----AACACATTAGCAC--ATGGAGTCAGGGCAGTTCCTCCTGCCACACTCCTTAAGACCC a score=11828.0 s hg17.chr17_random 2609003 61 + 2618010 CATATCCCTCTTCTAGTTCCATTTTTGACAAA--AGCCTTCATATTACAATTTGGTTTCTCTA s panTro1.chr19 42877738 61 - 82489036 CATATCCCTCTTCTAGTTCCATTTTTGACAAA--AGCCTTCATATTACAATTGGGTTTCTCTA s mm5.chr11 22470272 46 - 121648857 CTGGTCTCTCTTATGGCTCCATCTTTGCCA----------------ATTAATTAATGTATCT- s canFam1.chr9 14399770 63 + 53642819 CACATCTCTCTTCTGGTTCCATTTTTTACCAACCAACTTCCATATCACAGTCTGGTTTCCCTG a score=190596.0 s hg17.chr17_random 2609064 523 + 2618010 ATTCTTAGGTACAACAAAGAAGGTGCATTGATTTGCAGTTGGGAACTCTGTGGTTGCAAAATGGATCATC-TTTCAATGTTAAATTAATAAGTTTGCATTCTGTCTCTTTCATCTGGCACTTAAAAGTCAGGTTACTCTGAGTCAGCTCCTGAGAATCCCTTTGGTTCTGGTGCACTAA---------------TAACCCACCAGCCTAAGAACAGACATAGACCACTGTGACTTCACAAGAAAGTATCACCTTGTGAAGTTCTGCTTTGGAGACCAGATGACCTAACTCAACAGCATCTTCATCTCTTCTCATTCTAACCACAACAATTAGGCTGTTGGATTTGTGTGAAGTTTATTGCTAGAAGATTGGCACAGTATAGCCCTGCTCTACTAGATATAAAGCCAAGAGGTCTTGAATGGAGAAGCA--TTGGGAAAGTGTAGGTCTCATTTCTAAC-TAGTTCATATTCATGGCGAGCATAGGCTCAAAACAATGAATGCCGGATATTCATGTTTCCAACA----ATTTGTGGCTTCATCAGCA s panTro1.chr19 42877799 524 - 82489036 ATTCTTAGGTACAACAAAGAAGGTGCATTGATTTGCAGTTGGGAACTCTGTGTTTGCAAAATGGATCATC-TTTCAATGTTAAATTAATAAGTTTGCATTCTGTCTCTTTCATCTGGCACTTAAAAGTCAGGTTACTCTGAGTCAGCTCCTGAGAATCCCTTTGGTTCTGGTGCACTAA---------------TAACCCACCAGCCTAAGAACAGACATAGACCACTGTGGCTTCACAAGAAAGTATCACCTTGTGAAGTTCTGCTTTGGAGACCAGATGACCTAACTCAACAGCATCTTCATCTCTTCTCATTCTAACCACAACAATTAGGCTGTTGGATTTGTGTGAAGTTTATTGCTAGAAGATTGGCACACTATAGCCCTGCTCTACTAGATATAAAGCCAAGAGGTCTTGAATGGAGAAGCA--TCGGGAAAGTGTAGGTCTCATTTCTAACTTAGTTCATATTCGTGGCGAGCATAGGCTCAAAACAATGAATGCCGGACATTCATGTTTCCAACA----ATTTGTGGCTTCATCAGCA s mm5.chr11 22470318 502 - 121648857 ATTCTGAGCTGTGATGAACAAAGTGCTCCCAGCTTCCGATGGAAACTA---GGCTGC-AGATGCTTTGCC-TCTGGGTG-----TTGGTGAGCTTGAATTCTA----GTTCACACGGCATTTAAAAG--GTGCAACTGTGAGTTGGCTCTTGAGAATCTCTTTGGTTCTTGGGCACTGAGATAAATAGTACTCTGAATTCACCAGTCTGAGAACAGATACAGGTTATTGT--------AAATAAGTA-CAGGCTGTGCTGTGGAGACCTGGAGACCAGAAGACTGTGCTAGACAGCA--TTCATCCCACCACATTCTCAATGCACAAGTCCAGTTGTTGGGTTCACATG-AGTTTATTGATCAAATACTG----------GTTCTTCCCTACCAGCTGCAAAACTAAGAGGTCTTAACTGGAGGAACAAGCAGGAATGGGGGAAGCCTCATTTTCAAT------CTCGTTCATGATGAGTATAGTGTTAAAACAGTAGCTTCCAGACATCCATGTTTCCAACACTCCACTTGTGGTTTCATCAGCA s rn3.chr10 22266870 499 - 110733352 ATTCTCAGCTGTAATGAACAAAGTGCTTCTGGCTTCCCATGGAAACTT---AGTTGC-AGATGCTTTGCCGGTTGGGTG-----TTGATGAGCTTGAATTCTA----GTTCACGTGGCATTTGAAAG--GTGCAATTGTGAGTTGGCTCTT--AAATCCCTTCCGTTCTTGGACACTACTATAAATGGTACTCTGGATTCACCAGTCTGAGAACAGGTACAGGTTATTGTA-------AACCAAACAAAGGGCTATCATGTGAAGACCGAGAGAACGGAAGACC--ACTAGACAGCA--TCCATCCCACCTCATTCTCAATGCACAAGTCCAGTTGCTGGGCTCACATA-GGTTTGCCGCTTGAATACTG----------GTTCTGCCCTACTAGATGCTAAACTGAGAGATCTTAATTGGAGGAACA--AGCAGAAAAGGGAAGCCTCCTTTTCAAT------CTCATTCATAATGAGTATAGTGTTAAAAGTGTAGCTTCCAGACATCCATGCTTCCAACACTCAACTTGTGGTTTCATCTGCA s canFam1.chr9 14399833 518 + 53642819 ATACTCAGACACAACA-------------------CAGGTGGGAATATTGTGGTTGCAGAATGGATCATC-TCTCTATGTTAAATTAATAAGTTTGCATTCTGGCTAGTTCATCCGGCACCTAAGAATTAGGTTACTGTGAGTCGGCTTCTGAGAATCCCTTTGTTTCTGGTGCACTAATAAAATGGTACCTTTGAACTCACCAGCCTAAGAAGACACTCAGACCACAGTGACTGCATAAGGGAGTGTCACCATGTGAAGCTCTTTCTCAGAGATCAGACAGTCCAACTAGATAGCACCTCCATCTCATTTCATTCTAAATACAGGAGTTAGGTGGTTCAGTTCATGTGAAGTTTACTATTTCAGGGCTGGCATGGAATGGCACAGTTCTA-----TACTAGACCAAGAGGCCTTATTTGGAGACGCA--TTAGGAAAGCATAGATCTCATTTTAACC-CTGTTCATAGTCATAATGAGCACAAGGTCAAAACAATGGCTGCCAATCATCCATGTTTCCAACAGATAATCTGTAGCTTCAATATCA a score=46393.0 s hg17.chr17_random 2609587 97 + 2618010 ATTGTGGGCTGCCAAAGCTGCAGGGGACTTCCTGGTTTTGACCCATCCCAAGAGTAACAGGACACAAGGC-----TGATAGGATGAAATATCCAAAGTCCAC s panTro1.chr19 42878323 97 - 82489036 ACTGTGGGCTGCCAAAGCTGCAGGGGACTTCCTGGTTTTGACCCATCCCAAGAGTAACAGGACACAAGGC-----TGATAGGATGAAATATCCAAAGTCCAC s mm5.chr11 22470820 96 - 121648857 ATTGTGGGTTGTAAGAGCTGTAGAGGACTTGTTGGTTCTGACCTATCTTACAATTAACAGGATACGGGG------TAATCAGGTTTGATCTTCAGGGTCTAT s rn3.chr10 22267369 96 - 110733352 ATTGTGGGTTGTAAGAGCTGTAGAGGACTTGTTGGTTCTGACCTATCCTTACAATTGAAGGACACAGGG------TAACAGAATGGGATCTCCAAGGTCTAT s canFam1.chr9 14400973 98 + 53642819 aTCATGGGCTGCTGAAGCTGCAGGGGACTTTCTGGTTGTGACCT----TAAGATTAACAGGATATAGGAAGAGGGTGATAGGATAGGAAGTCAAATGCCCAC a score=4705.0 s hg17.chr17_random 2609684 9 + 2618010 CCCCAGGAT s panTro1.chr19 42878420 9 - 82489036 CCCCAGGAT s mm5.chr11 22470916 9 - 121648857 TCCCAGGAT s rn3.chr10 22267465 9 - 110733352 TCCCAGGAT a score=29638.0 s hg17.chr17_random 2609693 336 + 2618010 TCCAttttttttctttttttttttttgagacagagttttgctcgtgttgcccaggctggagtgcaatggcacgatctcggctcaccgcaacctccacctcctgggttcaagtgattctcctgccttggcctcccaagtagctaggattacaggcatgcgccaccatgcccagacaattgtggtttttttttttttttttagtagagacagagtttctccacgttggtcaggctggtctcgaactcctgacctcagatgatccacctgccttggcctcccaaagtgctgggattacaggtgtgagcaaccacacccACTGCCCCCCCCCACCCCCAC s panTro1.chr19 42878429 331 - 82489036 TCCAttttttttc--tttttttttttgagacagagttttgctcgtgttgcccaggctggagtgcaatggcacgatctcggctcaccgcaacctccacctcctgggttcaagtgattctcctgccttggcctcccaagtagctaggattacaggcatgcgccaccatgcccagacaattgt--tgtatttttttttttttagtagagacagagtttctccacgttggtcaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctgggattacaggtgtgagcaaccacacccgCTG-CCCCCCCCACCCCCAC a score=1222.0 s hg17.chr17_random 2610029 6 + 2618010 AGGGTC s panTro1.chr19 42878760 6 - 82489036 AGGGTC s canFam1.chr9 14401095 6 + 53642819 AGAATC a score=193617.0 s hg17.chr17_random 2610035 651 + 2618010 CCTTTTAAGAAAGGCTACAAATTATAATTAGAGGGATGGTAATCAGAAATGAAATCAAACGTGTTGGGTTCA---GAAAAAAACAGAAGATGCTATA-TTAGTGTATTCAGGAGAGGCACTGGGAGAAATAGACAAAATAAGAAAGAGAAAGGAGCAAAATGGATATGTTT---TTGTGGCTGCAGAGTAAGAAGAACCAAGAGGTCATTTGGAGCTCACTTACATGGAACAGAATGTACAGTGGGACTAAGATTGCAGGGACCGTGTCCAGCGTCCCAGTTACAGCACCGTCTCTTTGTAGTAATGACACAAAGACTATGTAGTAAATAATAATTAAGGATGAAAGA------------------------------------------------------------------------------CGAGCTGTGGACAAAG------GGTGAGATCAGGAGGGAAATAGGCTTTGGTTGTAAATAAAAGAC-ACATATTCACATT-TGCCCTAATGATGGTTCCCAC--GTGCCGTGGATCTTCAGGAACAGCCTTCCTTTTATGTAATTTTATGCTTCTCCGTAAAAATTATTTGTAAAATGTTTAATTAAATGTGATTT-AAATTCTATAATTTTCTGAGGTATATCatatatattaatttgaa--aatttaaaaatCCACCTATAATTTGCCT-TTTTAGGGTTTATGAAATATAGTAACTATAACCATCTTTGCTGTTACGCTAA s panTro1.chr19 42878766 651 - 82489036 CCTTTTAAGAAAGGCTACAAATTATAATTAGGGGGATGGTAATCAGAAATGAAATCAAACGTGTTGGGTTCA---GAAAAAAACAGAAGATGCTATA-TTGGTGTATTCAGGAGAGGCACTGGGAGAAATAGACAAAATAAGAAAGAGAAAGGAGCAAAATGGATATGTTT---TTGTGGCTGCAGAGTAAGAAGAACCAAGAGGTCATTTGGAGCTCACTTACATGGAACAGAATGTACAGTGGGACTAAGATTGCAGGGACCATGTCCAGCGTCCCAGTTACAGCACCGTCTCTTTGTAGTAATGACACGAAGACTATGTAGTAAATAATAATTAAGGATGAAAGA------------------------------------------------------------------------------CGAGCTGTGGACAAAG------GGTGAGATCAGGAGGGAAATAGGCTTTGGTTGTAAATAAAAAAC-ACATATTCACATT-TGCCCTAATGATGGTTCCCAC--GTGCCGTGGATCTTCAGGAATAGCCTTCCTTTTATGTAATTTTATGCTTCTCCGTAAAAATTATTTGTAAAATGTTTAATTAAATGTGATTT-AAATTCTATAATTTTCTGAGGTATATCatatatattaatttgaa--aatttaaaaatCCACCTACAATTTGCCT-TTTTAGGGTTTATGAAATATAGTAACTATAACCATCTTTGCTGTTATGCTAA s mm5.chr11 22470925 594 - 121648857 CTCTTTAAGAAAGG-GACAAAT--------------TGGCTGTCAGGGA-----------------------------------------------------------CAGGAGGGGTAT-----------GACAATG-AAGAAAGA--------CAAAAT-----TGTTTGCGCTGTGATCAGAAAGTGAGGAGAGCCAAGGAGTCATCTGGAGCTCACCCAAGCAGGACAGAATGTCCAGTGGCTCT-AGGTCACCAAGACCACATCCATTGTCTCAATTACAATTCCATCTCTTCATAGCAATG---TTAAGCCTGTGTGGTAAACAGCAATTAGTGGTGAAGAAACCC---------------------------TGTGCCCGGGTGGCCCTGCCTGAGAAGTAGGTCCATAAAGGATGTTGAGAGCTGTGGACAAAG------GATGA-CTCTGGGAGGAGACAAGCTTGAGTCATAATGAAAAGATAACATATTCACTTTAAGTCCTAATTGTGGGGCCTGA--GGGAACTAAATGTTCAGAAACAGTTGTGATTCTGTGTCATTTCAACCTCTCCTGTAAGAA---------------TGAATTAAATATGACTTGAAAATCCACAGCTGTGTGAAGTCTTACAGAAATACATGTTCTCATTGTTTTAAAAA--CACCTATAAACTGGGTAAGTTCAGATTTGGGACCTAAAGCAGCTACAGTTGTCTGTGCTGTTATGCCAA s rn3.chr10 22267474 574 - 110733352 CTTTTTAAGAAAGG-TACAAAT--------------TGGGTGTCAGGGA-----------------------------------------------------------CAAGAGAGGTAT-----------GACAGTG-AGGAAAGG--------CAAAAT-----TGTTTGCCCTGTGGCCACAGAGTAAGGAGAGCCAAGGTGTCAACT-GAGCTCACCCAATCAGGACAGAATGTCCAATGGCTCT-AGGTCACTGAGACCAGAGCCATTGTCCCAATTACAATGCCATCTCTTCATAGCCATG---CTAAGCC--TGCAGTAAACAGCAATTAGCAGTGAAGAAACCC---------------------------TGTGCCCTGGTGGCCCTGCCTGAGAAGAAGGTCCATAAAGGATGTTGAGAGCTGTGGACAAAG------GATGA-CTCTGGGAGGAGACAAGCTTGAGTCATAATGAAAAGAT-A-ACATTCACCTTAAGTCGTAACTGTGGGGCCTGA--GGGGACTAGATGTTC-----------------TGTGTCACTTCACCCTCTCCTGTAAGAA---------------TTAATTAAATGTGACTTGAAATTCCACAGCTGTGTGAAGTCTTATAGAAATGCATGTTCTATTTTTTTAAAAAAGGCACCCATAAACCGGGAAAGTTCGTCATTGGAGAGTAAAGCTGCCATGATTGTTTGTGTTGTTACGCCAA s canFam1.chr9 14401101 702 + 53642819 CCTTTTACTATAGGCTACAAAT---TATTGGAGGG-CAGCAATCAGAAGTGGAATGAAATGTACTAGGTTTAGATGATAAAAGTGGAAGGTATTATGTTTGGCAAATTCAGGGGAGATACTGGGAGATGCAGACAAAATATGACAGAAGAAGGGTGAAAACAGATATTCTC---TTATGGCCACAGAGGGAGATAAGACAAG--GTCATTTACAACTCACCCAAACAGAACAGAATGTTTGGGGGCAGT-GGACTGCAGGAATCATGTTCAGCACCCCAGTTATAGCACCACCTCTTCATATTAATGATATGAAGCCTATGCAGTAAACAGCAATTAGTGATAAACAAACCTGTGGTTCAGGTAGCTCTGAAAGGAAGGTCCACAGAGGTGTTCA-------------------------------GGAGCTGTGGCCAGAGGTAGGAGATGAGATGACAGGGGAGATACCCTTGGGTTATAATTGAAAAAC-AAATATTCACATC-CACCCTAATGATGGTACCCACATATGCCCTGGATCTTCAAGAAAAGCCCTGTTTTTTTGTAATTTTATACCTTTCAATAAAAATCATTTATGAGCTGTTTAAGTAAATATAGTTT-AAACTCTTTAATTTTGTAAGATATATAATATATTCTAAATTGCA--AATTTAAAAATCTGCCTGTAATTTGGATAGTGTAGAGTTTATGAAAT--AGTTACTACAATCATCTTTGCTATTATGCTAA a score=20267.0 s hg17.chr17_random 2610686 90 + 2618010 TAATTAAAGATCTAGACTAAGTATGTGTATGGAAA-ATATGTTTTATAAATCACATGGAAAACACATTCTATTCACCTTGATTTAATCTTt s panTro1.chr19 42879417 90 - 82489036 TAATTAAAGATCTAGACTAAGTATGTGTATGGAAA-ATATGTTTTATAAATCACATGGAAAACATATTCTATTCACCTTGATTTAATCTTt s rn3.chr10 22268048 76 - 110733352 TAGT--------CATACTCAGTGCATGTGTTGAA----ATG-TTTATAAATAACACTGAAAATAC--TCTAATTGCTTTAATTAAATCTTC s canFam1.chr9 14401803 83 + 53642819 CAACTAAAAATCCATG------ATATATGTGAAAATACATGTTTTATAAATGACATTGAAAATAT--TCTATTCACCTTAATTTTATCTTT a score=43535.0 s hg17.chr17_random 2610776 464 + 2618010 gtaggagattggtcagagtggtgggagaaactatagggaaaggatgcaaaccttctgaaagttcagaaggctctgcatagcttcaggggagaataagctgaaggcagctgttctctgatcctgaggcagagggcaaggagtaggtacaaggaggtgtaggggaatttatcgtaaacaggcttgtttacttaggttgtccagaaaccgacctttgataatctgtgcacatgactgctccctgaaaaggggaacaataatgttaattacccgcagattgtgtttgctccaggctttcggcattatgtctgtactgaataaaagcaagcagcttcagctgttcgcagctgctctcttctttggccctaagtgccggcagacccctagctgctcttacactgcacgcctgtgttgtcagtactcccttcatccgacgctcggccagggtctgcaggacagacctggca s panTro1.chr19 42879507 464 - 82489036 gtaggagattggtcagagtggtgggagaaactatagggaaaggatgcaaaccttctgaaagttcagaaggctctgcatagcttcaggggagaataagctgaaggcagctattctctgatcctgaggcagagggcaaggagtaggtacaaggaggtgtaggggaatttatcgtaaacaggcttgtttacttaggttgtccagaaaccaacctttgataatctgtgcacatgactgctccctgaaaaggggaacaataatgttaattacccgcagattgtgtttgctccaggctttcggcatcgtgtctgtactgaataaaagcaagcagcttcagctgttcgcagctgctctcttctttggccctaagtgccagcagacccctagctgctcttacactgcatgcctgtgttgtcagtactcccttcatccgacgctcggccagggtctgcaggacagacctggca a score=1584.0 s hg17.chr17_random 2611240 8 + 2618010 AATCTTCA s panTro1.chr19 42879971 8 - 82489036 AATCTTCA s mm5.chr11 22471565 8 - 121648857 ACTCCTCA a score=5503.0 s hg17.chr17_random 2611248 38 + 2618010 GCAAAAATCCATCACCAGAGTTCCTA-CTGGATGTTT-----------------CC-------- s panTro1.chr19 42879979 38 - 82489036 GCAAAAATCCATCACCAGAGTTCCTA-CTGGATGTTT-----------------CC-------- s mm5.chr11 22471573 54 - 121648857 GAAAAAAT-AATCACTAGAGTTCCCT-TTATATGTGCGCATGTGCACACACACACA-------- s canFam1.chr9 14401887 53 + 53642819 GCAAAAATCCATCACTAGAGTTCCTATTTGTAtctctctctct-----------ctctctctct a score=71813.0 s hg17.chr17_random 2611286 327 + 2618010 CCCACAAACACACAGACAC-------------TACGATGt----tctac---tgccactgtaacaaagtgacatgcattt-catggctcaaaataacacaaaacacgaatgtactatcttactgttctctatttcagaaatctgacttgggactcagtgtactaaaatcaaagtgttggag-------------------gtcctgggggggatt----------tgttttattgccaaacttttccagctttcagaggctgctc------acattcctgggcttgtccaccatttccatcttcaccatcagccatctcgtcacccttaactctgccttcatcacatctccttcgccaacactgactgaatcttctacttccc s panTro1.chr19 42880017 327 - 82489036 CCCACAAACACACACACAC-------------TACGATGt----tctac---tgccactgtaacaaagtgacatgcattt-catggctcaaaataacacaaaacacgaatttactatcttactgttctctatttcagaaatctgacttgggactcagtgtactaaaatcaaagtgttggag-------------------gtcctgggggggatt----------tgttttattgccaaacttttccagctttcagaggctgccc------acattcctgggcttgtccaccacttccatcttcaccatcagccatctcgtcacccttaactctgccttcatcacatctccttcgccaacactgactgaaccttctacttccc s mm5.chr11 22471627 340 - 121648857 CACACAAACACACATACATGCACATACATTCACACACTGTAGTCTCTGC---TGAGACTGTAACAAGTTACCATAGGCTTAAATGGTTCAAACTTAAATG----------GTATCACCTTCCAGTTGTCTGTTTT--AAGCCCAGCATGGGCCTCCAGGCACTAATACCAAGGTACCAGCA-----CTG--CTATGTTCCTTCCTGAAGGACCCTACAG------TCCTTTAT-------CTTTTCCACCTTCTGGTTGCTGTGT------GCCATTCTTGGCTTGTGATGTCCTTCCATAGTCAAAGCAAGGGGATGCAGGGCTCTGAACACTGCCATCCTCTCATCTCCATCTCCAACACTGAGTGACTCTTC--CTTCCC s rn3.chr10 22268171 337 - 110733352 CACACAAACACACATGCAGGCCCATACATGCTCACACTGTAGTCTCTGC---AGAGACTGTAATAAGTTACCGTGAACTC-AGTGGCTCCGACTCACACA-----------------------GTTGTCTGATTT--AAGCCCAGCATGGACCTCCAGGCACTAAAACCAAGGTATCAGCAGAGCTATG--CTCC-----TTCCTGAAGGACCCAAGGGGCATGCAGCCTTAG-------CTTTTGCACCGTCCAGCTTTTGCCCCTGTGAGCCATCCTTGGCTTGTGAT---CTTCCACAGTCAAAGTGAGGGAGTGCATTGCTCTAAACACTGCAGTCCTCTCAGCTCCTTCTCCAACACCAAATGACCCTTCCTTTTCCC s canFam1.chr9 14401940 317 + 53642819 ctcACACACACACACACACGTGTAC-------tatattaa----tctgccattgccactgtaacaaa-tagcacag-----agtggctcagaacaacaca-------aatttattatct----------tatttcagaagtctggcaaaggtcccactgagctaaaa-caaggtattggctgacctatgttcc-------ttcctggaggtcccagaggagaacctgtttccttgc----ccattccagcctcc----------c------acattctttggcttaggttccccttctacctttgaagccagcaacctcatcactacaaa-tctgcctttaccacat-tccttccctgatggggact--ctcttctacctctc a score=2817.0 s hg17.chr17_random 2611613 8 + 2618010 tcttccac s panTro1.chr19 42880344 8 - 82489036 tcttccac s mm5.chr11 22471967 8 - 121648857 CCCTTCAA s canFam1.chr9 14402257 8 + 53642819 tcttCCAC a score=32.0 s hg17.chr17_random 2611621 2 + 2618010 ct s panTro1.chr19 42880352 2 - 82489036 cg s mm5.chr11 22471975 2 - 121648857 CA a score=29727.0 s hg17.chr17_random 2611623 348 + 2618010 ttttttttttttttttgagacggagtcttgctctgtcacccaggctggagtgcagtgacgcgatcttggctcactgcaacctccacctcccaggttcaagccattctcctgcctcagcctccggagtagctgggattacaggtgtgcaggcatgcaggcatgcaggcatgtgccaccatgcccagctaatttttgtggggttttttgtttgtttgtttgttcgttcgtttagtagagacagggtttcaccatgttggtcaggctggtctcgaacccttgacctcgtgatccacccacctcggcctcctaaagtgctgagattacaagcgtgagccaccgtgcccagcc s panTro1.chr19 42880354 336 - 82489036 ttttttttttttttttgagacggagtctcgctctgtcacccaggctggagtgcagtgacgcgatcttggctcactgcaacctccgcctcccgggttcaagccattctcctgcctcagcctccggagtagctgggattacaggtg--------tgcaggcatgcaggcatgtgccaccatgcccagctactttttgtggggttttttgtttgtttgttt----gttcgtttagtagagacggggtttcaccatgttggtcaggctggtctcgaacccttgacctcgtgatccacccaccttggcctcctaaagtgctgggattacaggcgtgagccaccgtgcccagca a score=873.0 s hg17.chr17_random 2611971 3 + 2618010 cct s panTro1.chr19 42880690 3 - 82489036 cct s canFam1.chr9 14402448 3 + 53642819 CCT a score=3668.0 s hg17.chr17_random 2611974 32 + 2618010 cttccacttttaaagacattatgattatcttg s panTro1.chr19 42880693 32 - 82489036 cttccacttttaaagacattatgattatcttg s rn3.chr10 22268508 23 - 110733352 CTTCAACATTAGA---------GATGACGTTG s canFam1.chr9 14402451 20 + 53642819 CTTCCACTTCTAAAGACACA------------ a score=68474.0 s hg17.chr17_random 2612006 141 + 2618010 ggcccacctgaataattcaggatactctccctattttaaggccagctgattagcaaccttaattctacttgtgactttaattacctttttgccaagtaacatcagctattcaca-ggctctgggtattaggacctgggcatc s panTro1.chr19 42880725 141 - 82489036 ggcccacctgaataattcaggatactctccctattttaaggccagctgattagcaaccttaattctatttgtgactttaattacctttttgccaagtaacatcagctattcaca-ggctctgtgtattaggacctgggcatc s mm5.chr11 22471991 137 - 121648857 GGCCCATCTAAATGACCGAGGATAATCTA---ATTCAAAGGCCAGTTGATTATGAACCTTAATTCTATCTAAAACTCTAATT-CCCCTTTGCCACATAATACATCCCATTTACA-GGCTCTGGGTATTATAATGTGGACAGC s rn3.chr10 22268531 139 - 110733352 GGCCCATCTAAATGATTGAAGATAAGCTCCTAATCCTAAGGCCAGTTGATTAAGAACCTTAATTCCATCTAAAACTCTAATT-CCCATTTGCCACCTGATA-ATCCCATTCACA-AGCCCTGGGTATTATAATGTGGACATC s canFam1.chr9 14402471 142 + 53642819 GCcccacctgaatcattcaagataatctccccaatttaaggccagcttattagcaaccttaactctgtctgcaccattaactcccccattgccatgtgccacaacatattcacagggttccagatattaggggacagacatg a score=2523.0 s hg17.chr17_random 2612147 31 + 2618010 --cttcggggaccattattcttcctcccacaCC---------------- s panTro1.chr19 42880866 31 - 82489036 --cttcggggaccattattcttcctcccacaCC---------------- s mm5.chr11 22472128 31 - 121648857 --TGGGAGTGGGTAGGAGTCTGCCTACTACACT---------------- s canFam1.chr9 14402613 49 + 53642819 gtgaggggagggtgtgattctgcctgttacaCTCTCCTACAACTAAACC a score=216005.0 s hg17.chr17_random 2612178 534 + 2618010 -AAAGGAAACAGAGAGAG------------------------------------------------------------GGAGGGGAAAAGAGA--------------------------------------CAGCCCATGTATTATCTCTCTAAAACCCCAAAACCAAAACTGGA---------GTA-AGCAATAAAGTCACGAGTGTTTAAATTCACGAACCAATCAAGCTTCCCGGTTGTACTTCAACCCTCAGGGAACAT-TCTGACATAAGGAGAGCATATGTTTAAGGCTATATCTTAACTAATAGTTTGAAGATGTAAACATACTCCATAACCTT-GTGGGGTCATCTCTTTAGAGCAACAATaataacaattaacatttactgagtgcttccaatgtgc----caaagtgttaagtgttctctatgtgcatttgctatacaactacccattttgcagatgaagaaagtgaggcacgagaggttcacagc------cagtcacacagatagttagtgccacagccaggattcacacccaggaccatgggactccaaatcctgcacttttaaccgtcatgaaaaa-ctgCCTCTTCCTCC-TTTTTTTTTTTAACCAATATACACTTTGCAATAAT------------------------------------------------------------------------------TTATTCCCTAA-----TTGAC s panTro1.chr19 42880897 535 - 82489036 -AAAGGAAACAGAGAGAG------------------------------------------------------------GGAGGGGAAAAGAGA--------------------------------------CAGCCCATGTATTATCTCTCTAAAACCCCAAAACCAAAACTGGA---------GTA-AGCAATAAAGTCACGAGTGTTTAAATTCACGAACCAATCAAGCTTCCCGGTTGTACTTCAACCCTCAGGGAACAT-TCTGACATAAGGAGAGCATATGTTTAAGGCTATATCTTAACTAATAGTTTGAAGACGTAAACATACTCCATAACCTT-GTGGGGTCATCTCTTTAGAGCAACAATaataacaattaacatttactgagtgcttccaatgtgc----caaagtgttaagtgttctctatgtgcatttgctatacaactacccattttgcagatgaagaaagtgaggcacgagaggttcacagc------cagtcacacagatagttagtgccacagccaggattcacacccaggaccatgggactccaaatcctgcacttttaaccgtcatgAAAAA-CTGCCTCTTCCTCCTTTTTTTTTTTTAACCAATATACACTTTGCAATAAT------------------------------------------------------------------------------TTATTCCCTAA-----TTGAC s mm5.chr11 22472190 716 - 121648857 -AAGGGAAAGAGGAAGAGAGTAGATGAAAGGAGAGAAGAGGAGAGGGGTGAAGGGAAAAAAGGGGAGAGAAAAGGAGAGGAGGGGAGAGGGGAAGGGAGAGGAAAGGAGGGGAGGGAAGGGAAGGGAAGTCAAGACCTCATGTTACCTCTCTAAAACACCAGCATCCAAACTGAATACTGTTATGTATAGTGATGAAGACATGTGTGCTTGAACCCTCTGACCAATCATGTTTCCATGCAGTCCTTCAAGCCCCAGGGACCACAGCTAATACAAGGATAAAGCATGCTTAAGGCCACATCATAACTAATAGTTTGCAGGTGTAAACATATTCCACAGCCTT-TAGAGATCATCTTTTTATAGCAACAACAACAACAATTAACCTTTATTGAGCATTTACAATGTGC----CAAAAGGCTAAGTGTTCTCCGTGTGTTTTTTTCTAACAGTGTCCCATTTTACA----AAGAGCACGAGGCAGTAGTGGCTCCTAACTCAT--CAGTCATTCAGATAGTGGCTG----AGCTCAAATTCAGTCCCAGGACTGTGGGTCTCCCAACTGTGCATTTCCAAGCATTGGGCAAAATCTGCCTCTTCC------TTTTAGGTCA--CAATATCTACTTCAAAATAACTGATTGCTAAGTAATCTTGGGGCAAAACAAAAGGTACAATTAGATGAATGAAGTTTATCCCAAGGTCAGTCTTGGCTGTTATCCCCTGACCTCTCTTAC s rn3.chr10 22269156 522 - 110733352 -AAAGGAAGGGAAAGGAATG----------------------------------------------------------GAAGGGAAGCTAAGA-----------------------------------------CCCCACTGTTATCTCTCTAAAGCACCAGT------ACTGGC-------GTGTACAGTGATGAAG----ATGTGCTTGAACTCTCTGACCAGTCAAGTTTCTGTGCAGTCCTTCGAGCCTCAGGGAGTACAGCTAATACAAGGATAAAACATGTTTAGGGTCACATCATAACTAATAGTTTGCAGGTGTAAACATATTCCATAGCCTT-TAGAGATCATCTTTTTATAGCAACAACAACAACAATTAACCTTTATTGAGCATTTACAATGTGC----CAAAAGGCTAAGTGTTCTCCGTGTGCTTTTTCTA-ACAACTTCTCATTTTACAGACAATGCACAGGAGGCAGTAACAACTCGTAACTCACCAAAGACATTCAGATAGTCGCCG----AGCTAAAGTTTAGTTTCAGGACTGTCGGTCTCCCAGCTGCGCACTTCCAAGCATTGGGCAAAGACTGCCTGTTCC------TTTTAGGTCA--CAATATGTACCTCATAATAAC------------------------------------------------------------------------------TGACTCTCTAA-----TTGAC s canFam1.chr9 14402662 554 + 53642819 AAAAGAAAAATgagagagagagagagag--------------------------------------------------agagagagagagaga--------------------------------------gaTTTCATGTATTATCTCCATAAAACACCAAGACCCAAACTGGAGCTTGATGCATACAGTGACAAAGTCATGTGTGTTTAAATCTACCAACCAATCACGTTTTCATATTGTACTGCAAGCCTCAGGGAACACAGGTGATGTAAAGATAGTATATACTTAGGCTTATACCTTAACTAATAGTTTGAAGATGTAAACACACTCCATAACCTTCTGGGGGTCACCTTTTTATAGCAACaataacagcaattaacacttactgagcatttccaatgtaccaaacaaagtgttcagtgttct-gatgtgcatttcctacgcacccactcatctc-----tgaggagcctcaggcaagagacatttataacttaccagagtttcatggagagttagtgtcagagccagtattcaaacccaggactgtgtgacttcagatcctgcacttttaaccatcatgcaaaa-ctgcctctTCT------TTTT--TTTAATCAACATACATTTTTCAATTAT------------------------------------------------------------------------------TTATTCACTAA-----TTGAC a score=39520.0 s hg17.chr17_random 2612712 147 + 2618010 AGAGCTAGAAGGAAAA---------------------------------GACCAGAGTGGGAC-------CTAACC-------------------------------------------------AAAGGCATTTGGAAATGGCTTTTACCTGTAT----------TTGGA--AACTCAAGCCTTCCTAGGGAAGAACTATGAGTTCACTGCT----------CCACTCTACCTTAAACCCCAGTTATTATAACACGA s panTro1.chr19 42881432 147 - 82489036 AGAGCTAGAAGGAAAA---------------------------------GACCAGAGTGGGAC-------CTAACC-------------------------------------------------GAAGGCATTTGGAAATGGCTTTTACCTGTAT----------TTGGA--AACTCAAGCCTTCCTAGGGAAGAACTATGAGTGCACAAAT----------CCACTCTACCTTAAACTCCAGTTATTATAACACGA s mm5.chr11 22472906 197 - 121648857 AATTCTTGGAGAGAAA---------------------------------GAAAAGAAAAAATC-------ATAACCATTTAAGAATGACAGAGACCGGAGATTAGAAGGAAACTGTAGATCTAAGAGAGGAATGTGGGAATGGCTGTCACTTGCTCAAAAAGCA--TGGAA--AATCCAAGTC--CCCAAGGAAGAGCAGTAAA---ACTGGT----------TTATTGTGCACC--ACCCTACCTGTTGTAACACAG s rn3.chr10 22269785 201 - 110733352 AGAAATGAAAGAAAAGGGTCATAACCATTTAAGAATGACAGAGACTAGCGATTAGAGGGAGACTGTTGATCTAAC--------------------------------------------------AGAGGAGTGTGGGAATAGCTGTCACTTGCTCAAAAGGCATTTGGAA--AATCCAAGTC--CCCAAGGAAAAGCAGTAAG---ACTAGTTTATTGTGCACCACCCTACCCTAAGCCCTAGTTGCTGTAACACAA s canFam1.chr9 14403381 164 + 53642819 AGAGATGGAAAGAAAG---------------------------------AATGGGAGTAAGAT-------CTAATA-------------------------------------------------AAAGGTGTCTGGGAATGGCTTTCACTTGCTCAAAGGAAA--CAGGATGCATTCAAGCCATCCTAGGGAGGAACAGTAAG---ACTGGTTCACTGTGCTTCATGCTACCTTAAACCCCAGTTATTATAACACAA a score=1293.0 s hg17.chr17_random 2612859 5 + 2618010 TGTGA s panTro1.chr19 42881579 5 - 82489036 TGTGA s mm5.chr11 22473103 5 - 121648857 CATAA s canFam1.chr9 14403545 5 + 53642819 CATAA a score=-1199.0 s hg17.chr17_random 2612859 51 + 2618010 TGTGAACTTTCCATATGTTACATTGTTCACATCAAGTTATAATAACTGGGG s canFam1.chr9 14403545 24 + 53642819 -----------CATA----ACAT-----ACAGAATTCTCTGGTA------- a score=-171.0 s hg17.chr17_random 2612864 22 + 2618010 ACTTTCCATATGTTACATTGTT s mm5.chr11 22473108 13 - 121648857 ------CATATACGATGTT--- a score=191.0 s hg17.chr17_random 2612864 2 + 2618010 AC s panTro1.chr19 42881584 2 - 82489036 AC a score=-636.0 s hg17.chr17_random 2612886 24 + 2618010 --CACATCAAGTTATAATAACTGGGG s canFam1.chr9 14403550 19 + 53642819 CATACAGAATTCTCTGGTA------- a score=20819.0 s hg17.chr17_random 2612910 180 + 2618010 CTTAAGGTAGAGTGGAGCAGTGAACTTATAGTTCACTGCTAGGGTGG-AAAGAGTGCCTGCCCTAAAAT--------AACTTTAAACAGATAACATGATAATAGTAAGAATAAAATATAGCAAAACAAA-AAATTGGGGATTATGTTTAGGATATAATTTATAT-----------------------------------------AGAAAAGTGAGATTTTAAAAGCCACA s mm5.chr11 22473121 200 - 121648857 ------------------------CTGGTAGCTT-TTTCGAAGAGGC-AAATTGTGCTTATCCCAAAATATAATTACAGTTCTGAACAGGTAACACAGTAAAGGTGAGAATAAAATATATCAAAATAAAGAAGTTGGGAGCTATATGTAAGAT---ATCTACATCAGGGAGGGGGGAGAGAGAGAGAGAGAGAGAG--AGAGAGAGAGAGAGAGAGAACTCAAAAGGCACC s rn3.chr10 22269986 206 - 110733352 CATAATGTATAG------AATGTTCTGGTAGTTT-TTTCAAAGGGGCAAAAATGTGCTTATCCCAAAATATAAAT--CGTTGTGAACAGGTAACACAGTAAAGGTGAGAATAAAATATACCAAAATAAAGAAGTTGGGAGCTGTTTTTAAGAT---ATCTACAT-------------GTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTCAAAAGGCACA s canFam1.chr9 14403569 140 + 53642819 ATTTTGTCAGAG------------TGGAAAATAT--------------AAA--GTGTCCATCCTAAAGTATAAAT--AATTTTAAACAGACAATATAGTAGGAGTAAGAATGAAATATACCAAAG-----AAATTGAG-----------ATAT---AATTAATT------------------------------------------GAAAAGTGAGAATTTAAAAGATACC a score=25495.0 s hg17.chr17_random 2613090 86 + 2618010 AAGCATATTAAAATAAATTCTGTAAGTTTAGAA-CACTCTATAAAAATATATATGACTTCTCAGCAAAAG--TATCCAAAACCAGAACA s panTro1.chr19 42881690 82 - 82489036 AAGCATATTAAA-----TTTTGTAATTTTAGAAACACTCTATAAAAATATATATGACTTTTCAGCAAAAG--TATCCAAAACCAGAACA s mm5.chr11 22473321 82 - 121648857 AAAGTCATTGAAGTGAATTCTCTACATTTAAAA-CATACTATGAAAATATTT----CTTCCCTGCAAATG-ATATTCAAAG-CAGAACA s rn3.chr10 22270192 81 - 110733352 AAGGTCATTTAAATGAATTATCTGCATTTAAAA-CATATTATAAAAA-ATTT-----TTCCAAGCAAAATGATATTCAAAG-CAGAACA s canFam1.chr9 14403709 84 + 53642819 AAGGATACTGAAATAA--TGTATAAGTTTAGAG-CATTCTTTAAAAA-ATATATAATTTCCCAGCATACT-GTATCTGAAGCCAGAAAA a score=1213.0 s hg17.chr17_random 2613176 3 + 2618010 TAG s panTro1.chr19 42881772 3 - 82489036 TAG s mm5.chr11 22473403 3 - 121648857 CAG s canFam1.chr9 14403793 3 + 53642819 CAG a score=6216.0 s hg17.chr17_random 2613179 31 + 2618010 ----ATATAGGCTTATTTCACCTAGCTAAAATAGA s panTro1.chr19 42881775 31 - 82489036 ----ATATAGGCTTATTTCACCTAGCTAAAATAGA s canFam1.chr9 14403796 35 + 53642819 AGTGATGTGGGCTTATTTTGTCTGACCAGAATAGA a score=0.0 s hg17.chr17_random 2613210 15 + 2618010 GTATTCTAacacact a score=524.0 s hg17.chr17_random 2613210 7 + 2618010 GTATTCT s panTro1.chr19 42881806 7 - 82489036 GTATTTT a score=921.0 s hg17.chr17_random 2613217 8 + 2618010 Aacacact s panTro1.chr19 42881813 8 - 82489036 Aacacact s rn3.chr10 22270950 8 - 110733352 CACATGCA a score=12969.0 s hg17.chr17_random 2613225 41 + 2618010 cacacatacacacacaaacacacacagacacaTTTTCATAA s panTro1.chr19 42881821 41 - 82489036 cacacatacacacacaaacacacacagacacaTTTTCATAA s rn3.chr10 22270958 41 - 110733352 CACACACACACACACACACACACACACACACACATCCATGA s canFam1.chr9 14403831 41 + 53642819 CAACCATTCTAACACAGAAACGCACACATGTGTtttaataa a score=0.0 s hg17.chr17_random 2613266 2 + 2618010 TA a score=302.0 s hg17.chr17_random 2613266 2 + 2618010 TA s panTro1.chr19 42881862 2 - 82489036 TA s rn3.chr10 22270999 2 - 110733352 CA a score=3798.0 s hg17.chr17_random 2613268 16 + 2618010 GTATCACTGAGTACTT s panTro1.chr19 42881864 16 - 82489036 GTACCACTGAGTACTT s canFam1.chr9 14403872 16 + 53642819 gcatcactgagcactt a score=7611.0 s hg17.chr17_random 2613284 32 + 2618010 TTTAATGTATAA---tgcatagattatctcctttc s panTro1.chr19 42881880 32 - 82489036 TTTAATGTATAA---tgcatagattatctcctttt s rn3.chr10 22271652 35 - 110733352 TCTAATGGGCAATGTTGCATATATTACCCAGTTTG s canFam1.chr9 14403888 30 + 53642819 --ttatgtgcag---tgcatcaattatctaattta a score=135217.0 s hg17.chr17_random 2613316 416 + 2618010 gtttccacaaca-------------------------------------------------acccc-atcaatcagggctgagt--attaatctcagttcacagctgtggaaattaaagactgaagaact-------gggtagcaa-tggcagaatt-gggatgtgaactgacagctggtaaccagggtATTCATCAGCATAAATCTAGACTGAGCTTTACATGGACTAAGTTTATAAAATGTAAACTCCTGAAGTTCCTGTTTCTCCTTAAGTTCACCTGGGGACAGAATTATAGCTTTTAGGCTAGACTTTTTCATCTAGCCCTTGTGACTTCCTGACAACTTCATCGGTCTCCCCTCTGTCCAGACTTGTGGGATCCTGACTTCAGGGTGGAATACGGGTGTTT---------TTTAAT-----------CATTCTCCTCCTCTGCCCTCATCTCTGCACAGCAGTCTACAGATTACAAAGCTTGTATGTGTAC s panTro1.chr19 42881912 416 - 82489036 gtttccacaata-------------------------------------------------acccc-atcaatcagggctgagt--attaatctcagttcacagctgtggaaattaaagACTGAAGAACT-------GGGTAGCAA-TGGCAGAATT-GGGATGTGAACTGACAGCTGGTAACCAGGGTATTCATCAGCATAAATCTAGACTGACCTTTACATGGACTAAGTTTATAAAATGTAAACTCCTGAAGTTCCTGTTTCTCCTTAAGTTCACCTGGGGACAGAACTATAGCTTTTAGGCTAGACTTTTTCATCTAGCCCTTGTGACTTCCTGACAACTTCATCGGTCTCCCCTCTGTCCAGACTTGTGGGATCCTGACTTCAGGGTGGAATACGGGTGTTT---------TTTAAT-----------CATTCTCCTCCTCTGCCCTCATCTCTGCACAGCAGTCTACAGATTACAAAGCTTGTATGTGTAC s mm5.chr11 22474455 461 - 121648857 GTTTCAATAGCATTACTATGTGCACTTCTTATGGACAATGCTGTATATATTACCTAGGTGGACTTC-CCACATGAGGGCTGTCA--GTTCAGTTTAATTCAAAGCTGTGGGAACTGAGGAGAGAGGGGCTGGAATTCGGGCAGCAG-AGTCAGA----------------GAAGGCTGGTCACCAGAACTGCCATCTGC----ATCTGGATGGATTGTCACATGT-CTGTGTTTATAAAATATAAAC-CTGAAAGCTAGTGCTTTTCGTTGAATTCACTTGGAAAGAGACAAAT-GTCTTTACACTAGAACTTTTAATCCAGCCTTCATGGCTTTCTTACAAC-CCACTGGTTTCCTTGCTGTTCAGCTGTGCGGGGTCATGACTACAGGCTAAGAC-TGAGCATTTAAAATCACCATCAATGGCAACAACAACACCCTCACCATCTGCTTGAATTTGTGCACAG-------CAAACTAAAAAGCTCATGTGTGTAC s rn3.chr10 22271688 394 - 110733352 TTTCCCACATGA-------------------------------------------------GGGCT-GTCAGTTCAGTTCAGTTCAGTTCAGTTCAGTTCACAGCAGTGGGAACTGATAAGAGAGGAGCTGCAATTCGGGTGGCAG-AGTCGGG----------------AAAGGCTGGTCACCAGAACAGCCATCTGC----ATCTGGATGGATTGTCACATGT-CTGTGTTTGTAAAACGTAAAC-----------------CTCTTTGAATTCACTTAGAGGTAGACGAAATGCTTTTACACTAGAAGATTGAATCCAGCCCTCATGACTTCCTGTCAGC-CTGCTGGTTTCCTTCCTGTTCAGGCGTGTGGAGTCATGACTACAGGCTAAGACTGATGTATTTAAA------ATCATCATCAATAACAACGCCCTCATCATCTGCTTGAATTTGTGCACAG-------CAAGCTGCAAAGCTCATGTGTGTAC s canFam1.chr9 14403918 418 + 53642819 attcctacaata-------------------------------------------------acccctatccatcaaag-tgagt--attaagctcagttcacatttgtggaaattgaaacctgtagagTT-------GGGCAGCAGATGGCAGGGTCAAAAATCTGAACTTGAGGCTGGTCACTAGAACATTCATCAGCATAAATGTACACTAACCTTCACATGGACTGCATCTATAAAATGTAAACTCTTGCAATTAATGTTTATTTCTGGGTTCATTTGGGGACAGAAGTATGCTTGTAAGGCGAGGCTTTTTTATCAAGCCCTTGTGATCTCCTGACTACTTCATCGGTCTCCTCTTTCTCAAGACCTGTGGGATCGTGGCTACAGGGCAGACAAGGAGTGTAT---------AACAAT-----------CATCACTATCCTCCTCTCTCAACTGTGCACTGAAACTTACGAATTACAAAGCTCATATGAATAC a score=2331.0 s hg17.chr17_random 2613732 12 + 2618010 CCTACAGACCTA s panTro1.chr19 42882328 12 - 82489036 ACTACAGACCTA s mm5.chr11 22474922 12 - 121648857 CCTACACACACA s canFam1.chr9 14404336 12 + 53642819 ATTATATGCCAA a score=9323.0 s hg17.chr17_random 2613744 58 + 2618010 TTACATAGCTTCTGTATGTATATTACATACAGATTACATGTATCATGTGTGTACATTG s panTro1.chr19 42882340 58 - 82489036 TTACATAGCTTCTGTATGTATATTACATACAGATTACATGTATCATGTGTGTACATTG s canFam1.chr9 14404348 56 + 53642819 TTATACAGCTCATGTGTGTACACT--GTACAGACTACATAATTTGTCTATACACATAG a score=4544.0 s hg17.chr17_random 2613802 19 + 2618010 CTTGAAAATTACATAGTTC s panTro1.chr19 42882398 19 - 82489036 CTTGCAAATTACATAGTTC s rn3.chr10 22272171 19 - 110733352 CTTTAAAACATCAGGATGC s canFam1.chr9 14404404 19 + 53642819 CATGCAGATTACATAGTTC a score=0.0 s hg17.chr17_random 2613821 66 + 2618010 AAGTATGTTTGTTACATACCAATTATGTGGCTCATGTATGTAAAGTACACACCTATTACATAGCTA a score=2123.0 s hg17.chr17_random 2613821 31 + 2618010 AAGTATGTTTGTTACATACCAATTATGTGGC s panTro1.chr19 42882417 31 - 82489036 AAGTATGTTTGTTACATACCAATTATGTGGC s rn3.chr10 22272190 25 - 110733352 AAA-----CTCCTAGATACTGA-TATGCACA a score=4467.0 s hg17.chr17_random 2613852 35 + 2618010 ---------TCATGTATGTAAAGTACACACCTATTACATA-GCTA s panTro1.chr19 42882448 35 - 82489036 ---------TCATGTATGTAAAGTACACACCTATTACATA-GCTA s mm5.chr11 22475067 34 - 121648857 ---------TCATGTGTACACA-CACACACACA-CACACACACAC s rn3.chr10 22272215 38 - 110733352 GCGATTAAGTCATGTACACACA-CACACACACA-CACACA----- a score=80885.0 s hg17.chr17_random 2613887 228 + 2618010 ATGTATATATATTACATGTAGATCACAAAgcttatgtatgtacattaactcacttgctccccacaacaaccctctaaactacaaggaaaattattggcagtctcattttcatggtaagaactttgagaccagagaggttaatgttgctaggtgggtgggttaacggtagagcgtggactttaaacccctagcccaaaatccttcccactagtccaaactgcAACAAAG s panTro1.chr19 42882483 228 - 82489036 ATGTATATATATTACATGTAGATTACAAAGCTTATGtatgtacattaactcacttgctccccacaacaaccctctaaactacaaggaaaattattggcagtctcattttcatggtaagaactttgagaccagagaggttaatgttgctaggtgggtgggttaacagcagagcgtggactttaaccccctagcccaaaatccttcccactagtccaaactgcAACAAAG s mm5.chr11 22475101 188 - 121648857 ACACATACACAGAGCAAACATATTACAAAG------------CATTAATTCATCCACTACCC-CAACAACCCTGTGAACAACCATGACTGTCATCGGTGGTCCCA-----------------TTGAGACCAGGGAGGTCAACTTTGCCA----GGTTGCTTAATAACAGCATAGGAACTGTGAATCCCAGGCAC--AGTCCCGTCTACTTATCAGTATCACAAC---- s rn3.chr10 22272253 197 - 110733352 ---CACACACAATACAT----ATTACAAAGCACCTCTCTGTGCATTAATTCATCCACTCCCC-CAACAGCCCTGTAAGGGACTGTGACTGTCATCGGTGGTCCCA-----------------TTGAGACCAGGGAGGTCAAGGTTGCCA----GGTTGGTTAGTAACAGAATGAGAACCGTAAATCCCAGGCGT--AATCCCTTCTGCTTGTCTGTATCACAACAAGG s canFam1.chr9 14404423 219 + 53642819 ATGTATATACACTACATACAGATTATAGAGCTCACatatgtacgttaactcattcactcccaacaacagccctattaattacagggaagactgt---tagtctcatttcaatgataagaaaattgagacca-agaggttaagattgccc----agtgtgttaatagaagagcagggtctttaacccccaggc-caaagtcccttccgctaatccacactgtAACAAAG a score=4817.0 s hg17.chr17_random 2614115 71 + 2618010 ATGCAGAAAATGT----CACCATCAAGAAGATCTTCAAAAATTAAAAAAAAAAAAGTTTTAGTTAGAATAACAGA s panTro1.chr19 42882711 70 - 82489036 ATGCAGAAAATGT----CACCATCAAGAAGATCTTCAAAAATTTAAAAAAAAAA-GTTTTAGTTAGAATAACAGA s mm5.chr11 22475289 50 - 121648857 -------------------------AGGTGATTTTTTTTAAGGGGAAGGGGGGAGGTGGGAATGAAACTAAGGGA s canFam1.chr9 14404642 74 + 53642819 ATATGGAAAAAGTACAGCAGCATCAGGGTGATTTTTTAAAGGGGCAGGAAATTC-TTTGAAGCTAAAAGGGTAGA a score=0.0 s hg17.chr17_random 2614186 6 + 2618010 GCTTTG a score=-51.0 s hg17.chr17_random 2614186 5 + 2618010 GCTTT s panTro1.chr19 42882781 5 - 82489036 GCTTT s mm5.chr11 22475339 4 - 121648857 GCAT- a score=300.0 s hg17.chr17_random 2614191 1 + 2618010 G s panTro1.chr19 42882786 1 - 82489036 G s rn3.chr10 22272507 1 - 110733352 G a score=8370.0 s hg17.chr17_random 2614192 154 + 2618010 AAAAGCAAATATTCCAAACCAAAAGAAAGGAGGGAAG-GGAAAAGAAAAACC---------------------------TGTATC--GCAAA-------------------CTAAAAATCGAGTCG---------------TGATTAGTAATCTACGAGCAGTAAAATAG---------------------------------------------------------------------GTAATGAGAACAGCAT---------TCACGCATAT----------------------------------------AGAAGGGAGAAACCTAGAAGT-----------------------------------------A s panTro1.chr19 42882787 152 - 82489036 AAAAGCAAATATTCCAAACCAAAAGAAAGGACGGAAG-GGGAAAGAAAAACC---------------------------TGTATC--GCAAA-------------------CTAAAAATCGAGTCG-----------------ATTAGTAATCTATGAGCAGTAAAATAG---------------------------------------------------------------------GTGATGAGAACAGCAT---------TCACGCATAT----------------------------------------AGAAGGGAGAAACCTAGAAGT-----------------------------------------A s mm5.chr11 22475343 296 - 121648857 AAAAGCAAACTTTCCAAAGCTAAAGAAAAGAACGAGGAGGGAAAGAGTGAGC-----------------------------------------------------------CCAAAGGCCGAGCTG---------------TGGTTAGCAGTTTATCATCAGCAAAGCAGAGGGACCACAGCTGCTTAGATGACAAGGCTCTGTGTGACACCTGGAAACGAAATGAATCTG-------TATAGTAAGACCCGGATCAGATAAAATAATGTATATCCGAGGAAAACGGAAAGACAACAGCTTGGTGTTTCCAAAAAGAAAGGATGAGCAAAGAAGTTGGGAATTCTGGTAGCTCTCTCTGGGCATCACTCGTGGCACA s rn3.chr10 22272508 247 - 110733352 AAAAGCAAACATTCCAAAGCTAAAG-AAGGAAGGAGGAGGGAAAGGGTGAGCCCAAAGGCCAAGCTGTGCTTGACAGTTTATATCCAGCAAAGCAGAGGGAGCACAGCTGCCCAGACGTCAAGGCTCTGACACCTGGAAACGAATCTGCATAGTAAGACCCATAGGTCAG------------------------------------------ATAAAATAATATACATCTGAGGAAAATGGAAAGACAACAGCTT-------------GAAGTT---------------------------------TCCAAAAAGAAAGAAGGAACAAAGAGGT-----------------------------------------G s canFam1.chr9 14404716 150 + 53642819 AAAAGCAATAATTCCTAACCAAAAGAAAGGAGAGAATGGAGAAAGAATAAATCCA------------------------GTTTTC--CCAAA-------------------CCAAAAGCCAAGCCA---------------TGAATAGTAAT--------AAGGAAATAG---------------------------------------------------------------------GTAAGGAGAATATCAC---------TCACAAATAT----------------------------------------TAAAAGGAGCAACCAAGAAAT-----------------------------------------A a score=-1009.0 s hg17.chr17_random 2614346 48 + 2618010 AATGTGAGAAGACACTGTAC-----------ACATG----------GGT-----------------AAAGTCTC--------------------------------------------------------------------------------------TGTAAGCACATG s panTro1.chr19 42882939 48 - 82489036 AATGTGAGAAGACACTGTAC-----------ACATG----------GGT-----------------AAAGTCTC--------------------------------------------------------------------------------------TGTAAGCACAtg s mm5.chr11 22475639 172 - 121648857 TAGGTGTGGAAATGTTGCACAGTATCCCACAACATGCACTGTATTAGGTGTTGATTAAGAAAAATAAAAGCCTCTATTTCCATCCACTTTCTCTTTTCTGTGTGTGGGATTTATGCATGCTCCATGTTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACTCATG s canFam1.chr9 14404866 48 + 53642819 AATCTGCAAAGATACTGTAA-----------ACATA----------TAT-----------------GAAGTCAT--------------------------------------------------------------------------------------GGTAAATACATG a score=182440.0 s hg17.chr17_random 2614394 789 + 2618010 GG-------------------------------------TGAaatacgaa-ccagcagccatgtaggga-gtgggctctagggcccctttgccattaactcactgcacaaccttaggcaagtct-tcctcctttcactgccttagttcttacatccataagaAAA----AGTCCAT-CGTGG-----TAGTTACTTGTCCATAAAGCAAGTTGAGAGCCTTGAACAAAAAAATATTTTGGCAAAA-CATATGAT-----TACTCCCTGTCTAAAAGCCTACTGAATAGGACACATATCAAACATATACAGTTTAAGGTACCATAATAGACACCGTGTCTATTATGCAATCCTCTCG-AATAACAAATGCAGCATATAC-----ACACCACAGGGTCAATTTATTGACATAATAATAGTCAATTTATTATTGACTATTATT---ATGTCTTCTTTCTCACGGCAGAAAAGTAGTTAATGCTGTGCTCTTACTCTAATATCCCTGAATATCTTACTAAGTCA-------AT-CAAAATTAACAAGcaaacttccattgtctctcctctggacaggggcagtcccttcctggccatccc-caccacttcactctcaccctcattcattctccatgagacagctagggtgatctttttgaa----------gatcacagtgcagtactcccctgcttaaaatcttcattttccac----atctcttgtgttgaagatcaaaatactcagcagagctgagaaagcccagaacgaccctgtgt------------cctgtgcgcca---ccagcgtcc-------tctcaccctgcc--------------------------------ctcctcctcac-----cttctctgctcc----acacagggtaggcattc-------------------agtaaatacttgttcaatgaatgaaAAG s panTro1.chr19 42882987 789 - 82489036 gg-------------------------------------tgaaatacgaa-ccagcggccatgtaggga-ctgggctctagggcccctttgccattaactcactgcacaaccttaggcaagtct-tcctcctttcactgccttagttcttacatccataagaAAA----AGTCCGT-CATGG-----TAGTTACTTGTCCATAAAGCAAGTTGAGAGCCTTGAACAAAAAAATATTTTGGCAAAA-CATATGAT-----TACTCCCTGTCTAAAAGCACACTGAATAGGACACATATCAAACATATACAGTTTAAGGTACCATAATAGACACCGTGTCTATTATGCAATCCTCTCG-AATAACAAATGCAGCATATAC-----ACACCACAGGGTCAGTTTATTGACATAATAATAGTCAATTTATTATTGACTATTATT---ATGTCTTCTTTCTCACGGCAGAAAAGTAGTTAATGCTGTGCTCTTACTCTAATATCCCTGAATATCTTACTAAGTCA-------AT-CAAAATTAACAAGcaaacttccattgtctctcttctggacaggggcagtcccttcctggccatccc-caccacttcactctcaccctcattcattctccatgagacagctagggtgatctttttgaa----------gatcacagtgcagtactcccctgcttaaaatcttcattttccac----atctcttgtgttgaagatcaaaatactcagcagagctgagaaagcccggaacgaccccgtgt------------ccagtgcgcca---ccagtgtcc-------tctcaccctgcc--------------------------------ctcctcctcac-----cctctctgctcc----acacagggtaggcattc-------------------agtaaatacttgttcaatgaatgaaAAG s mm5.chr11 22475811 753 - 121648857 GGCGCTCCTGTGTATGTGTGTGTCCTCCACAAACAGGGATGAAGTACAAAGCCTTTGGTCATGTGGTCAGGCAGGCTCC--GGTCCCTTCACCACTGCCTCAAAAGGCAATCTGAAGCAATGCT-TTATCTTATTGCTATTTTAATTCTCTCGTCTA-----------------------------------------CTATAAAACAGGGCCAGAACCTCAAACAAAAGAATGCTTTAGTGGAATTGTATGGG-----TACTCCC--ATTAAAGGCATACTGATTAGCTCATGTATCAAA-ATGAATGGTCCA----GCTAGAATAATGAGTGTATTTATTGCATACTGCTCGC----TAGACAATTCAGTATGCGC-----A---------GTCTAAGCACTGTAAAAACCATA----------CACTGAATTTTACTTTAATGTCTTCTTTCTCATAGCAGAGAAGCAGTTGACATTATGACGCCACCCTACCATCTCTGTGGGTTCCACCAAACCATTCTGCTAC-CAAAGGTCACAAGCTGATCACCA-----------------------AACACCCTTCTTAATGTCCC-CGTGTGCTTACCCCTGCTCTCATTTACATTCCACAAGGC--CCAGG-----------------------------------------------------------AATTTCCAT----GACTCTGATGCTGAAGAGCAAGACACATCACAGAACT-AGAAGACCTGGGATCACCCACTGTGGGTGTTTTTCGACTTTCTGCCAATTCCAGTGAACACAAAGGTCTCAACTGGCAGCA------------TCTGGAGGGAGTCCTGGCTTCATCTCACTCTGTTCTCTTTGCTCTAGTAACTCAGCACAGATATTC-------------------AGTTAACGTTTGTGGAATGAATGAATAG s rn3.chr10 22273042 755 - 110733352 -------------------------------------GATGAAGTAAACG-CCTGTGGTCATGTGGTCAGACAGGCTCT--GGTCCCTTCACCACTGTCTCCTAAGACAACCTGAAGCAATGTT-TTATCTTATCACTGCTTTAATTCTTTTGTCTACTAAAAAATAATATTTCGTCCATGGTTATATAGTTACTTATCTATAAAACAAGGCCAGAACCTCAAACAAAAGAATGTTTTGGTGTAA-TATCTGAG-----AACTCCC-ATCTAAAGGCCTACTGATTAGCCCATGTATCAAA-CTGTACGATCCA----GTTAATATTTTGAGTGTATTTATTGCACACTGCCGGC----TAGACAATTCAGCATGCACTCTAAACACTATAAGAGCCATA--------------------------CACTGACTTTTACTTTAATTTTTTCTTTGTCATGGCAGAAAAG----TGACATCATGATGCCACTCTACCGTCTCTGTGGGTTTCACCAAACCATTCTGCTAC-CAAAGGTCGCAAGCTGATCACCA-----------------------AATACCCTTCCTACTGTCC------------CGTGTGCTCTCATTCACACTCCGCAAGGC--CCAGG-----------------------------------------------------------ATGTTCCAT----AACTCCGACGCTAACGAGCGAAGCACGTGGCAAAGCT-GGGAGAGCTGGAATCACCCACTGTGGGTGTCCG---TTGATCTGTCAGTTCCAGTGAACACAAGGGTCTCAAGAGGCAGCGTCTGGAGGCAGTCCTGG------------TTTCATCGCACGCTGTTCTCTCTGCTCTAGTAACTCAGCACACATGTTCAGTTAGCATGTGTGGAACGAGTGAACACGTGATGGATGAATGAATAA s canFam1.chr9 14404914 780 + 53642819 -------------------------------------GATGAAATTTGAAGCCAGTGGTCAAGTAAGGG-ATGGGCTCCAAGGCTCCTGTGCCATTGA--CACTGGACAACTTCAGGCAAATCTAAAATCTTTTTACTATGTAAATTCTTTTATCTGTAACAGAG----AGTCCAT-CATAG-----TAGTTAATTATTCATAAAACAGGTTAAGAGCCTTGAACAAAAGAATACTTTAGCCAAC-TATCTGATTAGCCTACTTCCTGCCTAAAAGCAGACTGATTAGGACATGTATCAAACATGTATAGTCTAAAATAGCATACTCAACACTGTGCTTACGATATAAGTCTGTAGAAAAGGTCAACACAGC---TAC-----ATACTGTG-------------GATACCATAAGAGTCAGTAATAAGTCGAATTTTATG---ACATCTTCTTTTTCATGGTAGAAAAC----TAACATTGTGCTACTCCTCAAATATCCTTGTATATTTCACCAAATTATTCTCCTACAAAAAAATAATGAGTaaaccaccatcatctctcttctgagtaggtgcagtagcctcccagctgacccacacacatttacacttgctctcatgcattttccacaagacagccagggttaccttttcagaacacaaatgtggtcatggcatggcactctcccacttaaaa-----cctttccgtagaaaactcttatgtttaagatcaaaatact---cagagttaggaaagcatggaatatcccagca-------------cttgtgtgcat---ccag------------cttc----------------------------------------tccctccttgc-----tgtctccgctccaatcacttagagtaagtattc-------------------aataaatatttgttgaaggaatgGATGA a score=1942.0 s hg17.chr17_random 2615183 12 + 2618010 GCAAACAATGGG s panTro1.chr19 42883776 12 - 82489036 GCAAACAATGGG s mm5.chr11 22476564 12 - 121648857 GTGATGAATGAA s canFam1.chr9 14405694 12 + 53642819 ATGAATAAAAAG a score=0.0 s hg17.chr17_random 2615195 8 + 2618010 TTTTTTGT a score=737.0 s hg17.chr17_random 2615195 8 + 2618010 TTTTTTGT s panTro1.chr19 42883788 8 - 82489036 TTTTTTGT a score=7101.0 s hg17.chr17_random 2615203 35 + 2618010 GTGAACAATGTATTAAGGTTTGTTTCTGAATAAGA s panTro1.chr19 42883796 35 - 82489036 GTGAACAATGTATTAAGGTTTGTTTCTGAATAAGA s canFam1.chr9 14405706 35 + 53642819 GAGAACAATACATTAAGTTTTTTTTTTTAATAGGA a score=27622.0 s hg17.chr17_random 2615238 304 + 2618010 AGCAACATTggccgcatgcagtggctcgcgcctgtaatctcaacactttgggaagctgagccaagcagatctttcaaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctacaaaaaatacaaaaaatagcagggcatggtggtgggcgcctgtaatcccagctgctcgggaggcttgaacctggggggtggagactgcagtgagctgagatggcgccagtgcactccagcctgggcaacagatcaagactctgtctcaagaaaaagaaaaaaaagaaagaaagaaaa s panTro1.chr19 42883831 303 - 82489036 AGCAACATTggccgcatgcagtggctcacgcctgtaatctcaacactttgggaggctgagccaagcagatctttcgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctccaaaac-tacaaaaaatagcagggcatggtggtgggcgcctgtaatcccagctgctcaggaggcttgaacctggggggtggagactgcagtgagctgagatggcgccagtgcactccagcctgggcaacagatcaagactctgtctcaagaaaaagaaaaaaaagaaagaaagaaaa a score=4581.0 s hg17.chr17_random 2615542 13 + 2618010 ---ACGAAGAAGAAGC s panTro1.chr19 42884134 13 - 82489036 ---ATGAAGAAGAAGC s mm5.chr11 22476936 13 - 121648857 ---ACGGAGAAGAAGT s rn3.chr10 22274152 16 - 110733352 AGGAGGAAGAAGAGGA a score=375550.0 s hg17.chr17_random 2615555 975 + 2618010 AG---------------------CAATATTTGAGTGAACCAAACAAATACATGATTGAGTTTCAGGCAGCAACAACTATCAAGTGGGGAAGAATGCTGG-----------GAGCAAGGACCTTCCAACAGCCTTGCATACCCTTGCCCTGCCGCAACATGAACCACACTGAGCTAAAGGT-AAAACCTATAAGGACAAGACTTCA-GCAAATTGCATGAGATGATGTTTCAGCT-ACCAACACCACAGCTAACTCAAAACATCTCCTCCTAAGGC------AAAAGAAAGTAACGCCCAGCGAGGACTAAAGCTAACACGCAGGTTAATTCCAGGATCACTAACAACAACGGTCTTTGTGTAAAGGATTTATTTGATTACCTATCATGTCCATCAGATTAAGATAATCATAAGGAGAAAA-AGAAGAGTGAAGTCGTTTCAGCTTTGCAACAGCACTTCCCACCCATTTGCAGGGATCTGTTTTTCCTGCTGTTGTGTTAAGGGAATGAAATCACTGCA-CAGGCCTT---TTGCACAGAGG-CAGTGCAAAAGGATTTAAGGATCTTTCTAAAACCAGGCTTAAGTCAGAGTGTTCTGGCAGTCCTTTGAAAGAAGTTATCTAGCTGAAACATCACTTGCCT----CCTCAGAAAGGTTTGGTGTCAGCTGGAAAAGGAAGGAAGCTGGAAGGAGGGAGGAGGTGCCCT----CCTTCTCTGAAGGTGATAATGATAAATGAGGA----TCAACTACCAGTATGATGGGCTAGGCCAACCCATTTTTCTCAGGCT-TATACCAAGGTACTGAATGATAAGTATGTCACTCAGATGATGATGACTTCATCGCAGCTATGTGAAAAGATCTTGACAACCA---------GGTTTTCTCTACTGGTGATGGTGCTAAATTGCTTTGTCTCC-TGAGCACTGGCAACTCTGAATTCTAGGTATAAATGGGTAAAGATCAGTAACTGCTCCTAAGCA-CCCCAGAGC--AGACCCTCACATAATAGGTTGTGTCATTTGACAGAATACTGAA------ s panTro1.chr19 42884147 976 - 82489036 AG---------------------CAATATTTGAGTGAACCAAACAAATACATGATTGAGTTTCAGGCAGCAACAACTATCATGTGGGGAAGAATGCTGG-----------GAGCAAGGACCTTCCAACAGCCTTGCATACTCTTGCCCTGCCGCAACATGAACCACACTGGGCTAAAGGT-AAAACCTATAAGGACAAGACTTCA-GCAAATTGCATGAGATGATGTTTCAGCT-ACCAACACCACAGTTAACTCAAAACATCTCCTCCTAAGGC------AAAAGAAAGTAACGCCCAGCGAGGACTAAAGCTAACAGGCAGGTTAATTCCAGGATCACTAACAACAACGGTCTTTGTGTAAAGGATTTATTTGATTACCTATCATGTCCATCAGATTAAGATAATCATAAGGAGAAAA-AGAAGAGTAAAGTCGTTTCGGCTTTGCAACAGCACTTCCCACCCATTTGTGGGGATCTGTTTTTCCTGCTGTTGTGTTAAGGGAATGAAATCACTGCAACAGGCCTT---TTGCACAGAGG-CAGTGCAAAAGGATTTAAGGGTCTTTCTAAAACCAGGCTTAAGTCAGAGTGTTCTGGCAGTCCTTTGAAAGAAGTTATCTAGCTGAAACATCACTTGCCT----CCTCAGAAAGGTTTGGTGTCAGCTGGAAAAGGAAGGAAGCTGGAAGGAGGGAGGAGGTGACCT----CCTTCTCTGAAGGTCATAATGATAAATGAGGG----TCAACTACCAGTATGATGGGCTAGGCCAACCCATTCTTCTCAGGCT-TATACCAAGGTACTGAATGATAAGTATATCACTCAGATGATGATGACTTCATCGCAGCTATGTGAAAAGATCTTGACAACCA---------GGTTTTCTCTACTGGTGATGGTGCTAAATTGCTTTGTCTCC-TGAGCACTGGCAACTCTGAATTCCAGGTATAAATGGGTAAAGATCAGTAACTGCTCCTAAGCA-CCCCAGAGC--AGACCCTCACATAATAGGTTGTGTCATTTGACAGAATACTGAA------ s mm5.chr11 22476949 943 - 121648857 GG---------------------TGAAGTTTTGTGGAGTCAGTCAAATAAATGACTGCATTTCAAGTCCCCA-GACTATAAACTAGGGATGGATTCTGGTATGTGGAGACAAGCAGAAACTCTC------CCCAGCTCCCACTGGCCTTGTCACAACAAGAAC--TTCTGGGCTAAAGGTAAAAACCTGTGAAAGCAAGATTTTAGGCCTATTGCATGAGGTAATGCCTCAGCCAACCAACACGGTGGAT-GCTCAGAATGTCTCCTTATGTGGCAATAGAAAAAGAAAGTAACACCCAATACGTGTTGAAGC----------------TCAAGGATTATTAATGGCAACTGCCTTTCTACAAGAGATCTGGGTGATTAGCTGCCGTACTTGCTGGATTAAGGTGCTAATGAAGAGAAAAGAGGAGAGTGAAATCACTTCGGTCTTGCGAGAGCACACCCCACCCACTGGTGGACTTCCATTGTTTTTAC-GTCACCTGCACTGAACACAATCACCTCAATAGGCCTGGCACTATGCCAAAG-TAGCACAAAAGGACTC---GATGTCTCTAAAGCCAGGCTTACAGCACAGCATCTCAGCACTCCTCTCAAAGAACTTACACAGGTGAGACCT---TTGCCTAGCATCTCAGAAAGGTTTGGTGTCATCCG-------------------AGAAGGAGAAGGGTGACCTAAGCCTTCTTTTGTAGACCAAAAGGACAAAGGAACAACATGCAATTCTTAGTATCATCTGATAGGCCAGACCACTCCTCCTTGGCA-TGGACCCATGTATGGAATGACAGACATGTGGCCCAGATGATGGTGACAAAGCCTTCATGAGGTGACAAGGCTTTGACAACCAAGAAAGGATGGCCTTTTGTGGGGGTGATGACACTAAATTGCTGTATCTTCATGAAAACTGGAATC--------------GTAAAT-GATAAAG------------TGCTGAGCA-CCCAGGACCAGAGACCGTTATGTGGCAGGCCAGATCACCGG--AGAACACAAAA------ s rn3.chr10 22274168 958 - 110733352 AGGGGAGGAGGAGGAAAAGAAGAAGAAGTTTTGTGGAGTCAGTCAAATAACTGGCTGCATTTCAGGCTGC-----CTATCAACTCGGGATGGATTCTAGTATGTGGAGACAAGCAGAAACTCTC------TCCAGCTCCCACTGGCCCTGTTACAACAAGAAC--TCCTGGGCTAAAGGTAAAAAGCTATGAAGGCAAAATTTTAGGCATATGGCATGAGGTAGTGCCTCAGCCAACCAACACCAGGGAT-CCTCAGAATGTCTCCTTATGTGGCAATCGAGAAAGAAAGTAACACCCAATAAATGTCGACGC----------------TCGAGGATTATTAATGGCAACAGCCTTTTTAGAAGAGATTTGGGCTATTGGCTGCCATACTCGCTGGATTAAGATGCTAAGAAAGAGAAAAGAGAAGGGTGAAATCACTCCGGTCTTGCAAGAGCACACCCCACCCATTGGTGGACATCCTTTGTTCTTAC-ATCACCTGCAATGAACACAATCGCCTCCAAAGGCCTGGCGCTATGCCAAAG--ATCGCAAAAGGACTT---CATGTTTCTGAAGCCAGGCTTACAGCCCAGCATCTCAGCACTCCGCTCAAAGAACTCATGCAACCTCGACCT---TTGCCTGCCATCTCAGAAAGGTTTGGTGTCATCCG-------------------AGATGGCGAAGGGTGAGTTAGGTCTTCTTTTATGAATAAAAATGATGAAGGAAAAATGTGCAATTCTTAGTGTCATCTGATAGGCCAGACCACTCCTCCTTGGCG-TAGATCCATGTATGGAATAACAGACATGTGGTCCAGATGATGGTGACAGAACCACCGTGAGGTGAAAAGACCTTGACAACCAAGAAAGGATAGCTTTTTGTGGGGGTGGTAACACTAAATTGCTGTGTCCTCCTGTGAACTGGAATC--------------ATAAAGTGACAAAG------------TGCTGAGCA-CCCAGGACC--AGTCCCTTATGTGACAGGTCAGGTTGCTGG--GGAACACTAAA------ s canFam1.chr9 14405741 980 + 53642819 AG---------------------CATTATTTTGGTGAACCAAACAAATAAATGGTTGGATTTCAGGCACCAACAACTGTCAAGTGGGAAAGAATCCTGC----------AGTGCAAAGGCCTTACCACAGTCCTCCATACACTGACCCTGCCACAACATGAACCACACTGGACTAGAGGT-AAAAGCTACCAGGAC-AGACTTCA-GCAAACTGCATGACAGGATGTCTCAGCAAACCAACACCACAGAT-ACTTCAAATGTCTCCTTAAATGGC------ACAAGAAAGTAACGCCCTACGAGCACTGAAGCTAATGTGCAGGTTAATTCAAGGATTATCAATGACAACAACCTTTGTATAAGGGATTTATTTGATTACCTATCATGTTCATCAGATTAAGACGATAAAAAGGAAGAAA-----AAATGAAATCATTTCAGTCTTGCGCTAGCACTCCCCACCCAC-------CATCTGTTTGTCTTCT-GCAGCATCAAATGAACAAAATCACCTCCACAGACCTGGTGGCATGCCAAAGGTAGTGCAAAAGGACACAGGGATCTTTCTAAAGCCAGGCTTAACCCAGATTGTCCTGGCACTCCTTTCAAAGAAGCTATCTGGCTAGAATATCTCTTACCT----TCTCAGAAAGGTTCGGTGGCAAGTG----GATAAGGAAACTAGGAAAAGGGAGGGGATGAGCC---TCCTTTTTTGAAAGTGATAGTAATGAATAAGAC----TAAATTCCCAGTATCATGGGATAGGCCAATCCATTCTCCCCAAGCTCCACAATGACAGAGTGAATGACAAATGTGTCACTCAAATGAGGATGACTTCATTGCTACCAAGTGAAAAGATCCCAACAACCAGGAAAATGTGACTTT-TCTGTTGGTGAAAATGCTAAACTGTCATGTCTCCCTGAGATCTGGCAACTCTGAACTCAAGGTACAAATGGATAAGA-TCAGTAACTGCTCCTAAGCACCCCCAGCAC--AGACCCTCACATAATAGGTTGGATCACTTG-CAAAGTAGTGACTACAAA a score=3968.0 s hg17.chr17_random 2616530 21 + 2618010 AGGCCAAACAAAATAAAACTA s panTro1.chr19 42885123 21 - 82489036 AGGCCAAACAAAATAAAACGA s canFam1.chr9 14406721 21 + 53642819 ACACAAAACAAAATGAAACCA a score=95051.0 s hg17.chr17_random 2616551 1022 + 2618010 AACTGTTGGATCtagaggctgaaggatctttaaaggtaggagtgggagggagtgagggataaaagactgcacattgagtacagtgtacactgctctggtgatgggtgcaccaaaatctcagaaatcaccactaaagaacctatcatatgaaaaaaggctcaacatcactgataattaggtaaatgcaaatcaaaaccacaagataccaactcacaccagtcagaatggtgattattaaaaagtcaagaaacaacagatactggtgaggttgtggagaaatgggaatgcttttacattgttggtgggaatgtaaattagttcaaccattgtggtagacagtgtggcaattcctcaaagatttagaactggaaagaccatctgacccagcaatcctgctactggatatcaccccaacagacctggtggcctgccaaaaaaatattaaatcattctattataaagatatatgcacatgtatgttcattgcagctactactcacaatagcagagacatggaatcaacccaaatgcccatcaataatacactggataaagaaaatgtggtacatacacatcatggaataccatacagccataaaaaggaacaacatcatgtcctttgcagggacatggatgaagctggaagccattatcttcagcaaactaacacaggaacagaaaatcaaacaccacatgttatcacttataagtgggagcagaaccatgagaacatctggacacagagaggggaacaacacacacagaggcctttcaggggagggcgggtggggagagcagtagggaaaagacctattgcatgctgggcttaatacctaagtgatgggttgataggtgcagcaaaccacc-tggcacatgtttacctatgtaacaaacctgcatatgtaacccagaacttaaaatataataatttaaaaaaaTAGATTGCATCATCTGCAAacaaaaaaattcattaatgtaattgaaaaccacctgtttcccaaaaactattaaaataaaaaTTT s panTro1.chr19 42885144 1023 - 82489036 AACTGTTGGATCtagaggctgaaggatctttaaaggtaggagtgggagggagtgagggataaaagactgcacattgggtacagtgtacactgctctggtgatgggtgcaccaaaatctcagaaatcaccactaaagaacctatcatatgaaaaaaggctcaacatcattgataattaggtaaatgcaaatcaaaaccacaagataccaactcacaccagtcagaatggtgattattaaaaagtcaagaaacaacagatactggtgaggttgtggataaatgggaatgcttttacattgttggtgggaatgtaaattagttcaaccattgtggtagacagtgtggcaattcctcaaagatttagaactggaaagaccatctgacccagcaatcctgctactggatatcaccccaacaggcctggtggcctgccaaaaaaatattaaatcattctattataaagatatatgcacatgtatgttcattgcagctactactcacaatagcaaagacatggaatcaacccaaatgcccatcaataatacactggataaagaaaatgtggtacatacacatcatggaataccatacagccataaaaaggaacaacatcatgtcctttgcagggacatggatgaagctggaagccattatcttcagcaaactaacacaggaacagaaaatcaaacaccacatgttatcacttataagtgggagcagaaccatgagaacatctggacacagagaggggaacaacacacacagaggcctttcaggggagggcgggtggggagagcagtagggaaaagacctattgcatgctgggcttaatacctaagtgatgggttgataggtgcagcaaaccaccatggcacatgtttacctatgtaacaaacctgcatatgtaacccagaacttaaaatataataatttaaaaaaaTAGATGGCATCATCTGCAAacaaaaaaaatcattaatgtaattgaaaaccacctgtttcccaaaaactattaaaataaaaaTTT a score=57244.0 s hg17.chr17_random 2617573 335 + 2618010 AAAATAGTTTTTAAGTAGGAATTGTGTCATATTAGTCTATTTATAAAACCAGAGTACCCCTAAAGGAAATCTTCAATAA--AATTAATAA------CTAAGTTAGAAGATTTTAAGTCATATGATTTGTGGCTGTGGAATTCAACCAATAATGAAATTGGAGATGAAATGCACAGTTTGGGGGTATGAGATAAAAAGCAATAAAAACATTTTAAATATAGCCAACCACTT-TAAATGAGCAGGTGCTTGAATCAATATCCCACAACTGCAAAAATTTTAGTGAACCTAAAGTATTGTCTCTATGGCAAAGTAAAAAAGgaagaaagaagaagaggaagaggaag s panTro1.chr19 42886167 335 - 82489036 AAAATAGTTTTTAAGTAGGAATTGTGTCATATTAGTCTATTTATAAAACCAGAGTACCCCTAAAGGAAATCTTCAATAA--AATTAATAA------CTAAGTTAGAAGATTTTAAGTCATATGATTCGTGGCTGTGGAATTCAACCAATAATGAAACTGGAGATGAAATGCACAGTTTGGGGGTATGAGATAAAAAGCAATAAAAACATTTTAAATATAGCCAACCACTT-TAAATGAGCAGGTGCTTGAATCAATATCCCACAACTGCAAAAATTTTAGTGAACCTAAAGTATTGTCTCTATGGCAaagtaaaaaaggaagaaagaagaagaagaagaggaag s canFam1.chr9 14406749 336 + 53642819 AAGGCTGCTTGAAGGCAGGAACTGTGCCTTATCAGTCTAGT-------CCCAAGCACCTCTAAAGGAAACTCTCAATAAATAAATAATGAAGTTATTTAAATTAGATGATTTTAACCCTAATTATGTGTGATTATGGAGTTTAAGTAGCAATGGAATCAGAGACAAAATGCATAGTTTAAGGGTGGGAGAAAAAAAGGAATAGAAACATTTTAAACACAGGTGGCTATTTGTAAATGAACAAATGCACGAATTGACATCCTGCAAGTACAAAAATTTTGGTGAATCTGAAACATCAGCTTTATGGTTTTAAAAAATAGTAATAAAATAG-AGAGGATAAGGAGG a score=6842.0 s hg17.chr17_random 2617908 102 + 2618010 aggaggaggaagaggaggaaggagaaggaggagaagaagaagaagaagagaaggaagaaggaagaaggaggaggagggagaaggagaagaggaggaaggaga s panTro1.chr19 42886502 89 - 82489036 aggaagaggaggaggaggaagaggaggaaggagaagaagaag-------------agaaggaagaaggaggaggagggagaaggagaagaggagaaaggaga