##maf version=1 scoring=multiz.v7 # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/danRer1/chr13_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2fr1/chr13_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/fr1/chr13_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1galGal2/chr13_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/galGal2/chr13_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3canFam1/chr13_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/canFam1/chr13_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5rn3/chr13_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/rn3/chr13_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1mm5/chr13_random.maf - # multiz.v7 R=10 M=0 /cluster/bluearc/hg17/multiz.2004-07-13/mm5/chr13_random.maf /cluster/bluearc/hg17/multiz.2004-07-13/panTro1/chr13_random.maf - a score=100.0 s hg17.chr13_random 0 1 + 186858 G s panTro1.chr12 22872328 1 - 117159028 G a score=100.0 s hg17.chr13_random 0 1 + 186858 G s canFam1.chr16 42426698 1 - 60307850 G a score=3090.0 s hg17.chr13_random 1 12 + 186858 AATTCCTCCTTG s panTro1.chr12 22872329 12 - 117159028 AATTCTTCCTTG s mm5.chr5 125452424 12 - 149219885 AATTCTTCTTCA s canFam1.chr16 42426699 12 - 60307850 AGTTCCTATCTC a score=4236.0 s hg17.chr13_random 13 14 + 186858 CACATTTCTGCTTT s panTro1.chr12 22872341 14 - 117159028 CACATTTCTGCTTT s mm5.chr5 125452436 9 - 149219885 -----TTTTAATCT s canFam1.chr16 42426711 14 - 60307850 CCCCTTTCTGCTGT s fr1.chrUn 308548316 14 - 349519338 CACAGTTGTCCTTT a score=0.0 s hg17.chr13_random 27 1 + 186858 A a score=546.0 s hg17.chr13_random 27 1 + 186858 A s panTro1.chr12 22872355 1 - 117159028 A s mm5.chr5 125452445 1 - 149219885 A s canFam1.chr16 42426725 1 - 60307850 A a score=4210.0 s hg17.chr13_random 28 14 + 186858 TCTCATCTACA-CAG s panTro1.chr12 22872356 15 - 117159028 TCTCATATACAACAG s mm5.chr5 125452446 14 - 149219885 TACCATCTGCC-TAG s rn3.chr4 5157655 14 + 187371129 TCCCATCTGCT-TAG s canFam1.chr16 42426726 14 - 60307850 TCCCACATGCA-CTG s fr1.chrUn 308548330 14 - 349519338 TCTCAAACACT-GAC a score=7547.0 s hg17.chr13_random 42 89 + 186858 AAGTGATCCAATATTTAGCTATAGAGCTATATTAGTTAAGAAGGTATTTT--TAAAGTAAAATTTGTAGGTTTT--TAGCTTAGTCT-CCATTT---- s panTro1.chr12 22872371 89 - 117159028 AAGTGATCCAATATTTAGCTATAGAGCTATATTAGTTAAGAAGGTATTTT--TAAAGTAAAATTTGTAGGTTTT--TAGCTTAGTCT-CCATTT---- s mm5.chr5 125452460 83 - 149219885 ATATCATCCA--GTTAGACTATAATACTATGCTAATTAAGAATATATTTT-------TAAAATCTGTGTGATCT--TAGCACTATCTGCAATTT---- s rn3.chr4 5157669 83 + 187371129 ATATCATCCC--ATTAGGCTGTATTACTATGTTAATTAAGAATATATTTT-------TAAATTCTGTGTAATCT--TAGCATTATCTGCAATTT---- s canFam1.chr16 42426740 80 - 60307850 AAGTCCTCTGCTCTTTAGCTTTAGAGCTCTATGAGCTAAAAAA--------------TAAAACTAGTACATTTTTATAACTGTGTCTTCGATGT---- s galGal2.chr2 141529953 76 - 147590765 AAGAATTTCATCCTTAAGCTACCAAGCT----------GGGCCTTACTAT-------TAGATATTTTCTGAATT--TA---CTGTCTAGCATGTGTTG s fr1.chrUn 308548344 79 - 349519338 AAATTTGTCCTTCTCCAGGTACAGTTTTTTTGTGTTTGAAACATTCTTTACTTTGAGTATATTTTTTATGTTTT--CA-------------TAT---- a score=207714.0 s hg17.chr13_random 131 138 + 186858 AAAATA---TGT-TCTGTTTTCTTAA-CTTCAGGATATGTGTGTAGTTTGTGGCAGTTTTGGCCAAGGAG-CAGAAGGAGGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTACCATCCATAGTTTGTCAGTATTAAGGTAAA s panTro1.chr12 22872460 139 - 117159028 AAAATA---TGT-TCTGTTTTCTTAA-CTTCAGGATATATGTGTAGTTTGTAGCAGTTTTGGCCAAGGAGTCAGAAGGAAGATTACTTGCCTGTTCTCAGTGTGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAA s mm5.chr5 125452543 140 - 149219885 AAAATA--GCTT-TACATGTTATTAATTTTCAGGATATGTGTGTAGTTTGTGGCAGTTTCGGCCAAGGAG-CAGAAGGAAGATTACTTGCCTGTTCACAGTGTGGTCAATGTTACCATCCATACTGTGTCAGTATTAAGGTAAA s rn3.chr4 5157752 140 + 187371129 AAAATA--GCTT-TACATGTTATTAATTTTCAGGATATGTGTGTAGTTTGTGGCAGTTTCGGCCAAGGAG-AAGAAGGAAGATTACTTGCCTGTTCACAGTGTGGTCAGTGTTACCATCCATATTGTGTCAGTATTAAGGTAAA s canFam1.chr16 42426820 140 - 60307850 CAATTA--CTATGTTCATGTTTTTAA-TTTCAGGATATGTGTGTAGTTTGTGGCAGTTTCGGCCAAGGGG-CAGAGGGAAGACTGCTTGCCTGCTCTCAGTGTGGCCAGTGTTACCATCCGTACTGTGTCAGTATTAAGGTAAA s galGal2.chr2 141530029 137 - 147590765 AAAAT----CTA-TGCTTTTCTATAA-TTTCAGGATATGTGCGTAGTTTGTGGGAGTTTTGGCCAAGGTG-CTGAGGGCAGGTTGCTTGCCTGCTCTCAATGCGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTGAG s fr1.chrUn 308548423 131 - 349519338 TAA------TTT-----TTTCTTCCA-TTTTAGGACATGTGCGTCGTGTGTGGCAGTTTTGGAAAGGGTT-CCGAGGGGCAGTTACTGGCTTGTGCACAATGCGCCCAGTGTTACCATCCTTACTGTGTCAACAGCAAAGTAAA s danRer1.chrFinished 17872879 141 - 40167097 AATATATGTCTG-TTTGTGTTTTGGT-CATTAGGATATGTGTGTGGTGTGTGGCAGTTTTGGACAGGGCG-TGGAGGGTCGACTTATTGCCTGTGCTCAGTGTGGACAGTGTTATCACCCCTACTGTGTGAACATTAAGGTGAG a score=1013.0 s hg17.chr13_random 269 3 + 186858 CAT s panTro1.chr12 22872599 3 - 117159028 CAT s mm5.chr5 125452683 3 - 149219885 TGT s canFam1.chr16 42426960 3 - 60307850 TAG s galGal2.chr2 141530166 1 - 147590765 --T s fr1.chrUn 308548574 3 - 349519338 TAT s danRer1.chrFinished 17873020 3 - 40167097 CGT a score=-2236.0 s hg17.chr13_random 272 14 + 186858 CCT---TAAATTGAGTT s panTro1.chr12 22872602 14 - 117159028 CCT---TAAACTGAGTT s mm5.chr5 125452686 14 - 149219885 GCT---TAGATTAAATG s canFam1.chr16 42426963 14 - 60307850 ACA---TACATTTAAAT s galGal2.chr2 141530167 17 - 147590765 GCTTTGTTATTTGAGAG s fr1.chrUn 308548577 14 - 349519338 AGC---TGCATTTAGTC s danRer1.chr24 4058738 14 + 23152154 CCC---CAAGCCCATCC a score=-7355.0 s hg17.chr13_random 286 13 + 186858 ----------------AACAAATATGTAT s panTro1.chr12 22872616 13 - 117159028 ----------------AACAAATATGTAT s mm5.chr5 125452700 13 - 149219885 ----------------AGTTAAAGTATTT s rn3.chr4 5158201 13 + 187371129 ----------------AGCAAAGGCATTT s canFam1.chr16 42426979 13 - 60307850 ----------------GTTAAAAATGTAT s galGal2.chr2 141530188 11 - 147590765 ----------------CTTAATTACAC-- s fr1.chrUn 308548595 9 - 349519338 ----------------AATAGAGAT---- s danRer1.chr24 4058752 26 + 23152154 CATCAGTCACAATCGACATAATGATG--- a score=12275.0 s hg17.chr13_random 299 19 + 186858 TGAATTTTTATTTGGTTTT s panTro1.chr12 22872629 19 - 117159028 TGAATTTTTATTTGGTTTT s mm5.chr5 125453210 19 - 149219885 TGAGTTTTTATTTTGTTTT s rn3.chr4 5158214 19 + 187371129 TAAATTTTTATTTTGTTTT s canFam1.chr16 42426992 11 - 60307850 TGAAATTTGAT-------- s galGal2.chr2 141530199 19 - 147590765 TGTTTTCATATTGTACTTT s fr1.chrUn 308548604 19 - 349519338 TAAATGTATTTTCTTTTTT s danRer1.chr24 4058778 19 + 23152154 TGAATTATGAGCTGCTTTT a score=-6825.0 s hg17.chr13_random 318 24 + 186858 AGTAGTAACATGAGC--TCCTAGTTC s panTro1.chr12 22872648 24 - 117159028 AGTAGTAACATGAGC--TCCCAGTTC s mm5.chr5 125453229 25 - 149219885 ATCACTAATATGGTT-GTCTCAGTTC s rn3.chr4 5158233 26 + 187371129 AGCAGTAATACAGTTTGTCTCAGTTC s canFam1.chr16 42427003 5 - 60307850 ---------------------ATTTC s galGal2.chr2 141530218 24 - 147590765 AATAGCACTATGCTG--CCTTTGGTT s fr1.chrUn 117249440 20 + 349519338 GGCAGTTATATG-----TTTCAGAT- s danRer1.chr24 4058797 24 + 23152154 ATCTGGAGCGAAGGT--TAATGGTGC a score=-4925.0 s hg17.chr13_random 342 34 + 186858 TCACA-----------------------ATTAAGTAT-----------TATGA------------------------------TTATTAAACATATGT s panTro1.chr12 22872672 34 - 117159028 TCACA-----------------------ATTAAGTAT-----------TATGA------------------------------TTATTAAACATATGT s mm5.chr5 125453254 72 - 149219885 TTAAG-----------------------ACTAATTATCTATTAT---ATATAATATGCCAATATTTAAATCAAGTATTTGTTCTTATTATGCATATGT s rn3.chr4 5158259 72 + 187371129 TTAAA-----------------------ACTAATTATCTGTTAT---ATATAATATGACAATATTTAAATCAAGCGTTTGCTGCTATTATGTTTATGT s canFam1.chr16 42427008 36 - 60307850 TTATA-----------------------ATTAATCATTTGC-------TAGGA------------------------------TTATTAGAC--ATGT s galGal2.chr2 141530242 68 - 147590765 TTGTGGTAATTAAGGGAGTCATTAACTTGTTAGATATTCTTCAGCTAATGTGA------------------------------CCATTATTTGTATGC s fr1.chrUn 117249460 34 + 349519338 TCATG-----------------------ATTCAGCCA-----------TACGT------------------------------CTGTTACACATGCAT a score=15978.0 s hg17.chr13_random 376 249 + 186858 GAC-------AGTATTTA---AGCACTTTAAATACTG-CTTTTAAGGGTTTCCTATCTCA--AGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCCGCTTTTGTCTTGAAAAAG-----------------TA-AAACATAAAAATATATGCATTTAA--------TTTAAAAGACAATTTATA---CTA--TTCACAAAGATTTTAGGTTTAGGTGA-TTCATTTTGTCTGTTGAT------TTAAAAAGCTGA---GAACTGGAGTAT-------TTAGTAAA-AAATTATTGGCCCATT- s panTro1.chr12 22872706 249 - 117159028 GAC-------AGTATTTA---AGTACTTTAAATACTG-CTTTTAAGGGTTTCCTATCTCA--AGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAG-----------------TA-AAACATAAAAATATATGCATTTAA--------TTTAAAAGACAATTTATA---CTA--TTCACAAAGATTTTAGGTTTAGCTGA-TTCATTTTGTCTGTTGAT------TTATAAAGCTGA---GAACTGGAGTAT-------TTAGTAAA-AAATTATTAGCCCATT- s mm5.chr5 125453326 220 - 149219885 GGC-------AGTATTTT---AGTACTTTTAATACTG-TTTCTAAGTGT----TACTCCG--ATAAATTAGTTC--CTAAAAATCTGTGTTCTTGATTTATGCAAATTATCCTGGCAGTGTATTGGAAAGG-----------------CA-TAAAATGTAGATATTTACTCTT---------------AAAACAGTTTATT---TTA--TAATTATATACTGAGAGGTTAGTTTACTTCATTCTGT-TGTT---------------------------CTTGACTAT------ATTCGTG-------TGACTGCCCAT-- s rn3.chr4 5158331 229 + 187371129 AGC-------AGTATTT----AGTACTTTAAATACTA-TTTTTAACTGTTTGTTTCCTGA--ATAA--------------------------TTGATTTATGCAATGTATCCTGTCATTGTATTGAAAAGG-----------------CATTAAAATGTAGATATTTACTCTT---------------AGAACAATTTATC---CCA--TGACTGTTCACTCAGAGGTTGTCCG--TTTACTTCCTCTGTTCTTCCTTGACCACAGAACAGT---CAGTGGCTGTATTCATTCATTTGTA-------TGACTGTCCAT-- s canFam1.chr16 42427044 255 - 60307850 GAC-------AGtatttatttaata-tttatatattaCCTTTCAAGTGT----TAACTGA--AAAAATTAACTC--CTATAAATCTGTGCTCTTAAATTGTAGTGGTTATCCTGC---TGTCTTGAAAAAC-----------------TA-AAAATAAAAAATGCATATCTTT-------------AAAAGATACTTCATATTTTTA--TTTGTTAAGGAATGAGGTTTAGTCAA-TCCATTCTGTCGGCTGATAATA--AAAAAAAGTTGACACCAACCACAGACC-------TTAATAAA-AATCCATTCATTCAC-- s galGal2.chr2 141530310 292 - 147590765 AACTTGTGAAAGACTTTA---A-----TTAAATGCCA-TTTTATAGTATGCATTGCCTCAAGAGAAATTAACCTTTTTGTAATTTCACAACCATAAATAGTACTGATTATCCAGCAGTTGGTTAAAATAACAGTTCGAGATATCAGCTTA-AAAGCTAAATACAAGCGAAATTAAAAACAAAGAAAAAAACGTAATGCATC---TTCATTTACTAGGGGCATAAGGTTTGGTTGA-TTCAATTTGTCTGTTGGC------TGTCAGAATTGACAGCAGTTGGAGTGG-------TTAATTAATACATTTTTCTTTCAT-T a score=17205.0 s hg17.chr13_random 625 59 + 186858 CTGTTCTTTCCCGCATTCTCTCTCCTCTGTGCTCACTCGTATACAAAATGACATTTTCT s panTro1.chr12 22872955 59 - 117159028 CTGTTCTTTCCCACATTCTCTCTCCTCTGTGCTCACTCATATACAAAATGACATTTTTT s mm5.chr5 125453546 48 - 149219885 ---GTCTCTCCCACATTTAGGTTCCTCAGCCCTTCTTCACAT--------ACATTTTCT s rn3.chr4 5158560 48 + 187371129 ---GTCTAGCCTACATTTAGATTGCTCATCTCTTCCTCACAA--------GCATTTTCT s canFam1.chr16 42427299 59 - 60307850 CTGTCCCTTCCCATGTTCATTCTTCTGAATCCTCACCTGTATATGAAAGGACATTTtct a score=11849.0 s hg17.chr13_random 684 43 + 186858 CCTTATAGCCAAAAGAAACAAAACAAGTGT--CATATTTAATGCA s panTro1.chr12 22873014 43 - 117159028 CCTTATAGCCAAAAGAAAGAAAACAAGTGT--CATATTTAATGCA s mm5.chr5 125453594 43 - 149219885 CCTTATATCTAAA--GAACAATGTTAGTACTATATATTTCATGCA s rn3.chr4 5158608 41 + 187371129 CCTTACATCTAAA--AAACAAAGCAAGTAC--TATTTTTAATACA a score=91.0 s hg17.chr13_random 727 1 + 186858 A s rn3.chr4 5158649 1 + 187371129 A a score=24540.0 s hg17.chr13_random 727 264 + 186858 ATTGGTGATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCGTGTGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCACTAGTTGTATCTAAGGTTCTTGGTTTTTTCTTTTTAAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTGAAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAAACTGTATACTC s panTro1.chr12 22873057 264 - 117159028 ATTGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCGTATGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCACTAGTTGTATCTAAGGTTCTTGGTTTTTTCTTTTTAAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTGGAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAAACTGTATACTC a score=1082.0 s hg17.chr13_random 1013 19 + 186858 GGGTTGGGGACCCCTGCTA s panTro1.chr12 2948224 17 - 117159028 gggctggggacccctgC-- a score=-208.0 s hg17.chr13_random 1032 3 + 186858 TAG s panTro1.chr12 2948241 1 - 117159028 --A s canFam1.chrUn 75682501 3 - 91062872 TAC a score=7769.0 s hg17.chr13_random 1035 26 + 186858 AGGATTCAGATTTAAATTCAGAAG---TT s panTro1.chr12 2948242 29 - 117159028 AGGATCCAGATTTAAATTCAGAAGAAGCT s rn3.chr1 88528889 29 - 268121971 AGGACCAAGACTCAAGTTCAGCTGCAGCT s canFam1.chrUn 75682504 29 - 91062872 AGGATCCTGATTCAAGTTCACCAGCAGCT a score=15939.0 s hg17.chr13_random 1061 48 + 186858 ----AGAATGAAAAAGAATTATATTCTTTATCTAAATGATTTCACAGTTAAC s panTro1.chr12 2948271 46 - 117159028 ----AGAATGAAAAAGAATTATATTCTTTATCTAAATGATTTCA--GTTAAT s mm5.chr3 35802748 48 + 160575607 ----AAAATTATATATAAATATATCTTATATATGAATATATTTATAGATTAT s rn3.chr1 88528922 48 - 268121971 ----AGAAAAAGTAAGAATTACGATCTTTACTTCAGGGACTTCACAGTTAAC s canFam1.chrUn 75682533 52 - 91062872 GAAAAGAAAAAGGAAGATTTATATTCTTTATCTGAAATACTTTGTAGTTAAC a score=-514.0 s hg17.chr13_random 1109 7 + 186858 --TGAGAGA s canFam1.chrUn 75682585 7 - 91062872 CACAAGT-- a score=-218.0 s hg17.chr13_random 1109 6 + 186858 --TGAGAG s panTro1.chr12 2948317 6 - 117159028 --TAAGAG s canFam1.chrUn 75682585 6 - 91062872 CACAAG-- a score=-94.0 s hg17.chr13_random 1109 12 + 186858 TGAGAGAAAGTC s canFam1.chrUn 75682585 12 - 91062872 CACAAGTTAGTA a score=91.0 s hg17.chr13_random 1115 1 + 186858 A s panTro1.chr12 25306662 1 - 117159028 A a score=-1.0 s hg17.chr13_random 1116 5 + 186858 AAGTC s panTro1.chr12 25306663 5 - 117159028 AAGTC s mm5.chr3 35802796 5 + 160575607 ATTTT s canFam1.chrUn 75682592 5 - 91062872 TAGTA a score=79332.0 s hg17.chr13_random 1121 713 + 186858 AGTATAA--GTTGAAAAGTTT-------ATAAGTGTTAATAAGAATGAAAAATAT----GTAC-----------------AATATGCAATTACTATTAAATATAATTTGCCCATAGTTGCACACTGATTTCATTATCATGGCAGTTAAGTATCAGAGCTTCTGGTT-TCTCACTCTTCATTCATGTATTCAGCAACCATGTGCTAAGGTACTAGGACAAGCACTGGATTAACAAGAAAAAGATGATACGGTCCACCCCTCAACA--ACTGTATGCTATAATCCGAAAAAA--------CAAGCAGGCAATTCCCATACAGAGTCATACATAC--AATGACAGGCATAAGACACCAC-TTACTGGAAGACATAGAAGGGATACTAGCCCAGG-------TTTGTGTTAATATTGTAGGCTTTTTGG-TAGAGGC-AATTCATAGGTTGATATCTGAAG-GGGAAGGAAAACACATGTAGGATAGAGGGAAGAAGT--AAATGCGAAGAGCTGGAGGTGAGGACGA--TCACTGTGGAGCTCTGTGTAGTCTAGTTT---------GGCTGGA----TGCTAGAACAAAGGTGCAGAGTATGGTAAGTGGAGAAAGATAAGGCTGAATAACCTGACAAGAACCACACTGATGTGAGAGTTTTGATTCCATGCTAAGGAA----TTTTCAAC-TTTTCCCAGGTGCAAAAGGAAACCAATGACAAAGTCAATGACTAGAGATTTAAAATGTCACTGGTCAGGTGACTGCT-TGTGACC--TGTAATTGCTTAACT s panTro1.chr12 25306668 716 - 117159028 AGTATAA--GTTGAAAAGTTT-------ATCAGTGTTAATAAGAATGAAAAATAT----GTAC-----------------AATATGCAATTACTATTAAATATAATTTGCCCATAGTTGCACACTGAATTCATTATCACAGCAGTTAAATATCAGAGCTTCTGGTT-TCTCACTCTTCATTCATGTATTCAGCAACCATGTGCTAAGGTACTAGGACAAGCACTGGAATTACAAGAAAAAGATGATATGGTCCACCCCTCAACA--ACTGTATGCTATAATCTGAAAAAA--------CAAACAGGCAATTCCCATACAGAGTCATACATAC--AATGACAGGCATAAGACAGCAC-TTATTGGAAGACATAGAAGGGATACTAGCCTAGGG------TTTGTGTCAATATTGTAGGCTTTTTGGGTAGAGGCCAATTCATAGGTTGATATCTGAAAAGGGAAGGAAAACACATGTAGGATAGAGGGAAGAAGT--AAATGCAAAGAGCTGGAGGTGAAGACGA--TCACTGTGGAGCTCCATGTAGTCTAGTTT---------GGCTGGA----TGATAGAACAAAGGTGCAGAGTATGGTAAGTGGTGAAAGAGAAGGCTGAATAATCTGACAAGTACCACACTGATGTGAGAGTTTTGATTCCATGCTAAGGAA----TTTTCAAC-TTTTCCCAGGGGCAAAAGTAAACCAATGACAAAGTCA-TGACTAGAGATTTAAAATGTCACTGGACAAGTGACTGCT-TGTGACC--TGTAATTGCTTAACT s mm5.chr3 35802801 702 + 160575607 TGTATACCTGTAAGAAAGTCT--------CAAGAATAAAGAAAAATTAAAAACATCACAGTAC-----------------AA---------ACCACAACACATAATTTGGTAGTAGTT----ACTGAGTTAATTGCCAGGGTGATTAAGTATCAGTGAATTTGATTCTCCCCATCTTCA--CAT-TCTTCACTAGCCACATGCTGTGG--------CAAGCACTGTCATGACATGTGAGAT-TTACACACTTCATTCCCCCACA--ACCAAATCCTATGATGCTATAAAAAGGACAGCTGAATAGACAGTGTCCACAC--AGTCACAGCTGT--GTTGACAGGTACAAGACAGAGCACCGCAGGGACAAAGGGAAGGCAGGC--ACTCAGATGCCTTCTGTGTGTCCATAT----GACTTTTTGG-TGGAGGC-AAT--AGGAATTGATGGTTGACG-GATACTAAGAAAGCCAGTAGCA-----GAATGAAAG--ACATGAGAACAG--AGACATGAGGAAGAGCTCGTGGAGAAGCTGTGAGTA--CGAGTTTCAGGGCTCCGGCTATACAAGTGACGGTACAAAAG-GCACAAGAGGGCTCTTGTCCAGAGGTAAGTCTCAGTTA-CTGTCTGGAATAAAGGTAGTTTGGGTATTTTCAGCTCAGGATAAGGAA--ACTCTTAAGCTTTTTCCCCTGAGCA-----AAACACATAAGGGAATAAATCCTAGGAGACTTGAAATAGCACTTGCCAGGTGACAGTT-TATGAAG--TGTGCTTTGTTCACT s rn3.chr1 88528970 657 - 268121971 AGTAGTA--GTAAGAAAGACTTAGCCTTGTCAGGAGAGATAAAAATGACAAATAT----GTATTCTTCACTAAAGT---AAAAAACTAAATGCTTATACACACA-----CACACACACACACACTGAATTAATTATTATCAGGGCTGAGTGTGAG----TATGCAT-TCCTACTCTTCACTTATTTACCCAGGGACCAAGTGCTAAGCTGCTGGGACAAGTCCTGAGATGATGAGAGAAGA-CGATATGTGGCAGCACTCAGCATGTCATTATGCCATATCCCCACCTCA--------GATGGACGTGGTGTCTGTACTGAGCGATACATTCTTAAT-ACAGGAACCATGAAACCC-CC------------AGAGGGAGCTACATGCCAGT-------GTTGTGTTGATACTGTAGCCTCTTAGG-TGGAGGT-GTTATTGAAGCTGATATTGG----GGGAAT---------------------TGAGGAAGTCAGCATGCGAACC-CTAGAGGT--AGAAGA--ACAC-----------GAGTAACCCATGGA---------TACTAAA----AGCAGGAGCAATTGGCCAAAGTA-GGTGAGTGGGGAGAGAGAAGGTGGAGTAGCCTGACAGCAGGCGCTCTGACGTCTAG---------TCATCATAAGGAAAGAGTATT-----TCCTCCTTCAGGGAAGGTTAAGCCAGCGAGAATCCTG----TAATAGATTTAAAATGATACTTGTCAAGTGACGGCT-TTGGAAG--TATGACT-------- s canFam1.chrUn 75682597 560 - 91062872 ----------TAAAAAAGTTGGAATCTTATGAATGT---TAAAAATGAAAAATAT----CTAC-ATAAACTACAATATAAAATACAAGATTACTATTAAATATAGTTTGCTCACGATTGCCCACTGAATTAATTACTACTGTGGATAAACACTAGAGCTTCTGGTTTTCTCATT-----------------------------------------ACAAG--ATGAAATTGCAAGACGA---TGACACAGTCCACCCCTGAATA--ATCATATACTATAAACTGAAAAAT--------CAAACAGGCAATTTCTA----GAGTCAAATATAC--CATGACAGGTTTAAAACAAGACATTATAAGAACACATAGAAGGGACAT---CCTGGT-------TTTCTATCAATGTTGTCTGCTTTTCAG-TGAAGGG-AATAGGTAAGCTGATACCTGAAA-----------------------------------------------------------------GA--TTAC------------------------T---------CTCTGCA--------------AAGCAGCAGAGTAGGGTAA---TAGCGAGAGAAGGCTCAACAATGTGGCAAGAACCAAATTGATTTGGGTGTTTGTATTCCACGCTAAGGAA----CTTGGAAT-TTTACCC-----------------AATGGCAAAACAAGTGGCTGGAGA-TTGAAATGTCACCTGTCAAGGGACAGCTACATGAACTATATAATTGCTTAATT a score=3628.0 s hg17.chr13_random 1834 66 + 186858 AA--TTATTATC-ACATGAGTGTGGGGTCTGTTAGCCTTAAATCACTACCTTAACCTTGAGAAGTTGAT s panTro1.chr12 25307384 68 - 117159028 ACATTTATTATC-ACATGAGTGTGGGGTCTGTTAGCCTTAAATCACTACCTTAACCTTGAGAAGTTGAT s rn3.chr1 88529627 42 - 268121971 --AGCTGTCAGT-AGACGATTGTTG-------CAGTTTT-----------------TGGGGAGGTTGAT s canFam1.chrUn 75683157 64 - 91062872 --AAGTATTACTAAGACAAGTCTGG-TCTTTTTGGTCTTCTACCACTAGCAGAAAC--AAGAATTTGAG a score=52287.0 s hg17.chr13_random 1900 370 + 186858 GATGCCTTTGTTT---------------------------------------TCTGAGAACAGTTTCAGTGTGCAGGCTGACAGTTCTATAGGGGTGGCAGA----AGAAAAGTGTAGGGCCAGAAAAAAAG--AGATACACAGACTTCTTGTGATTTTTTTAAAGCTATGGAACATGATGAAGTAACAAAGCATAAGTATACCCTTCACTATGAATGATTATGTTTTCACATCTTTCACTAGATGTGTGTAAGAAAAAATATTTAATGTAGCATGTATTAACCAAGCAATTGAGAGGAATACCGTTCACTACTTACAGTTTATTTCAGAAATCAG-----TGATTTGAATTTAATTCATAAATTTTGGCAACATACCTTCATCTAGCTCTTGA----------------ACACCTGGCAGCATCTGAAATAAATC s panTro1.chr12 25307452 365 - 117159028 AATGCCTTTGTTT---------------------------------------TCTGAGAACAGTTTCAGTGTGCAGGCTGACAGTTCTATAGGGGTGGCAGA----AGAAAAGTGTAGGGCCAGAAAAAAGG--GGATACACAGACTTCTTGCAATTTTTTTAAAGCTATGGAACATGATGAATTAACATAGCATAAGTATACTCTTCACTATGAATGTTTATGTTTTCACATCTTTCACTAGATGTGTGTAAGAAAAAATATTTAATGTAGCATTTATTAACCAAGCAATTGAGAGGAATACCGTTCACTAG----AGTTTATTGCAGAAATCAA-----TGATTTGAATTTAATTCATAAATTTTGGCAATATACCTTCATCTAGCTCTTGA----------------ACACCTG-TGGCATCTGAAATAAAGC s mm5.chr3 35803961 408 + 160575607 GATCCCTAGGTTTTTAGGAGCTACAGAATTGCAGATCCATAACATGCAGAGCTTTAAGGAGAGCTTCAGCATGCAGGCTGATAGTTTCATAAGGATTTCGGA-GTGAAGAAAGTGGTAAGCCAGAAAA-------GGTACAGAGGGTCTCAAAAATTCT----AAGTGGTAGGACAGGAGTAAATGGT---GTATAAGTACACTCTTCACTAAGGATGCTTGTCTTTTCCTACCTTCCACTTGGT-TTTGTAAGAACAAATA-GAAACATAGAAACTACCAA---------TGAAAGCAATACCATTAGATGTTTATAATTTATTTCAGTAATCAATTCATTAACCCAAATTCAATAAATAAGATTTGAC-ACCTCCCTTGTCTTAATTCTCTGGTTATACTTTGTTCCCATTCCTA-AAGCATCTGAAATCAGTC s rn3.chr1 88529669 253 - 268121971 ----------------------------------------------------------AATGACTT----------------------------GTTGAGGA----AGAAAGGATTAGAGACTTTGAA-----------------------------------AAGCCATGGAGC----TACAGAAATGCAGGGTGA--ACAGTACTCACCAGGAA------------CACATGCTT--------------------------TTAATGTGGAATCTATCAACC-----------AGAGGTAGCATTTGCTACTTACAGTTTGTCTTGTAAATTAATAATTTACTCTAAATTCAACGCATACACATTGGCAACATACCTTTATCCACCTCTTCAGTTATGTTTTTTACC-ATGTTTTTCTGCTTCTGAAAT--ATC s canFam1.chrUn 75683221 353 - 91062872 AACACCCACATTC-------------------------------------------------------------AGATTGACAGTTCCATAGCGATGGCACAAGTGAAGGAAGATTACAGCCAAAAGTGAGAACAGGCACATAGACTTTGCA-GATTTTTAAAAAGGTGTGAAACATGATGACCAAATGAAGAATAAATCTGTTATTCATT----ATGTTCATGTTT-GACATTTTTTATTAGATATATACAAAAATT-----TTAACATAGAACCTATTACCTAAATAATGGAAAGGGATGCCATTTACTATTTGTAGTTTATTTCAGAAATTAA-----TGACT--ATCTAAATTCGTAAA-TTTGGCAACATACCTTCTTTTAGTTCTCTAGTTATATTTTCTTCCAACATCTG-CTGCATCTGAAAT--GTC a score=13867.0 s hg17.chr13_random 2270 24 + 186858 AAATATTACTTATAATGTTTCAGT s panTro1.chr12 25307817 24 - 117159028 AAATATTACTTATAATGTTTCAGT s mm5.chr3 35804369 24 + 160575607 AGATATTATTTATAATATATGAGT s rn3.chr1 88529922 20 - 268121971 AGAT----TTTATAATGTTAGAAT s canFam1.chrUn 75683574 24 - 91062872 AAATATTACTTATAATGTGCAAGT s galGal2.chr2 141531981 24 - 147590765 AAATCTAAATAATAATTCTTCATT a score=9117.0 s hg17.chr13_random 2294 17 + 186858 CAAACAAGAGACATTAT s panTro1.chr12 25307841 17 - 117159028 CAAACAAGAGACATTAT s rn3.chr1 88529942 17 - 268121971 CAAACAAATGATATTGT s canFam1.chrUn 75683598 17 - 91062872 TAAACAAGAGATATTAT s galGal2.chr2 141532005 17 - 147590765 CAAATAAAATATTTTGA a score=-42.0 s hg17.chr13_random 2311 8 + 186858 CATGTAAA--- s panTro1.chr12 25307858 8 - 117159028 CATGTAAA--- s canFam1.chrUn 75683615 6 - 91062872 --TGTAGG--- s galGal2.chr2 141532022 11 - 147590765 CCTGAAATAAG a score=1748.0 s hg17.chr13_random 2319 18 + 186858 CCCACTGCAAGTCAAGGA s panTro1.chr12 25307866 18 - 117159028 CCCACTGTAAGTCAAGGA s galGal2.chr2 141532033 18 - 147590765 CTTATTTCCTCCCATGGA a score=32282.0 s hg17.chr13_random 2337 366 + 186858 GCATCTGTACTGTagattgatcatccctaatctaaaaatctgaaatccaaaatgctctacaacctgaaactttttgagcacggacatgacaccacaactgcaacacaacgttccacacctgacctcatgtgacaggctctggggaaaacagtaaaaactttgttacctgcaaaaaattactgtaaaacattgtagagaattagcttcaggctatgtgcataaggtatatatgaaacataaatgaatttcatgtttagactcaggtaccatccccaagatatttcattaggtatatacaaatattccaaaatctgaaaaaaatctacttttggtcccaagcattttggacaagggacatttaacccg s panTro1.chr12 25307884 361 - 117159028 GCATCTGTACTGTagattgatcatccctaatctagaaatctgaaatccaaaatgctctacaatctgaaactttttgagcacggacatgacaccacagctgcaat-----gttccacacctgacctcatgtgacaggctctggtgaaaatagtaaaaactttgttacctgcaaaaaattactgtaaaacattgtagagaattaccttcaggctatgtgcataaggtatatatgaaacataaatgaatttcatgtttagactcaggtaccatccccaagatatttcattaggtatatacaaatattccaaaatctgaaaaaaatctacttttggtcccaagcattttggacaagggatatttaacccg a score=311.0 s hg17.chr13_random 2703 2 + 186858 TC s panTro1.chr12 25308245 2 - 117159028 TC s galGal2.chr2 141532057 2 - 147590765 TT a score=3446.0 s hg17.chr13_random 2705 18 + 186858 CTACTGGAAAAATAAAAT s panTro1.chr12 25308247 17 - 117159028 CTACTGGAAAA-TAAAAT s canFam1.chrUn 75559309 18 - 91062872 CTACTAGAGAAATAAAAC s galGal2.chr2 141532059 18 - 147590765 GTGATCTAAAACTAAATT a score=11002.0 s hg17.chr13_random 2723 27 + 186858 TCCTTTTCAGTATGACAGA---AATTAAGA s panTro1.chr12 25308264 27 - 117159028 TCCTTTTCAGTATGACAGA---AATTAAGA s mm5.chr6 118909330 30 + 149721531 TCCCTCTCAGCAGGGAAGACTCCAGGAAGA s rn3.chr4 155060551 30 + 187371129 TCCCTCTCAGCATGAAAGAATCCAGGACGA s canFam1.chrUn 75559327 27 - 91062872 TCCTTCTCAGTAGGACAGA---AATTAAGA s galGal2.chr2 141532077 23 - 147590765 ----ATTCACCCAGTTGTA---AGTTAGGA a score=72691.0 s hg17.chr13_random 2750 111 + 186858 GATCAGCTTACCAAACTTGAACGCTGCAGGATTTTCTCAAGCCGCTCAATTTGGTCATCCTGTTTTTTAATCGTTTTTCTCATCATGGCATTTTCTACTTCAAGCCTAAAA s panTro1.chr12 25308291 111 - 117159028 GATCGGCTTACCAAACTTGAACGCTGCAGGATTTTCTCAAGCCGCTCAATTTGGTCATCCTGTTTTATAATAGTTTTTATCATCATGGCATTTTCTACTTCAAGCCTAAAA s mm5.chr6 118909360 111 + 149721531 GGACCACTTACCAAATTCACCCTTGACAGGTTTTCCTGAAGTTGATCAATTTCCTCTGATTGCTTTTTAATTGTAATTTCGAACTTGGATTTTTCAAGTTCAAGCCTAAAA s rn3.chr4 155060581 111 + 187371129 GGACCACTTACCAAATTCCCATTTGACAGGTTTTCCTGAAGTTGTTCAATTTCCTCTGATTGCGTTTTTATTGTAATTTTGAACTTGGAATTTTCAAGTTCAAGCCTAAAA s canFam1.chrUn 75559354 111 - 91062872 GACTGACTTACCGAACTTGGACTTAACAGGTCTTCCTGAAGCTGTTCAATTTGGCCTGCTTGCTTCTTGATTGTAACTTTTAACTTGGCATTTTCAACTTCAAGCCTAAAA s galGal2.chr1 166939539 111 - 188239860 GACTGGCTTACTGAGGTTGAGGCTTGCAGGTCCTTCTGAAGAGCTTCAATTCTATTGGTTTGTTGTTTGGCTGCAGCTTCCAATCTGGCATTTTCAATTTCAAGTCTTAAA a score=17894.0 s hg17.chr13_random 2861 79 + 186858 TGTGCATTTTAAAATAATTACTCTCACATA-TAATTGTTTTTAAAACATGTAAATTCTAAACAAAC---TTCTGAAGGT-----ATAA s panTro1.chr12 25308402 76 - 117159028 TGTGCATTTTAAAATAATTACTCTCACATA-TAATTTTTT---AATCATGTAAATTCTAAACAAAC---TTCTGAAGGT-----ATAA s mm5.chr6 118909471 78 + 149721531 T-TATATTTTAAAATAATTATATTTATAAAGTAATTTTTAAAATATCACAAAATTTGAAAATCAACAGTTACTTA---------ATAA s rn3.chr4 155060692 72 + 187371129 T-TGTATTTTAAAAGAATTAAATTTATAAAGCAATTTTAAAAATATCACATAAT---------------TTCTGAAAGTCAACAGCCA s canFam1.chrUn 75559465 85 - 91062872 TGCATATTTTAAAATATTTATTCTCAGACACAAATTTTAAACATACCACATAATTTCTAAACAAAC---ATCTAAAGGTCTTACATAA a score=31816.0 s hg17.chr13_random 2940 77 + 186858 TTACACAAATTCTTAGCAATCGCAAAAGTAGATGACTGGGCTACTGTGTCATTTTTCTACCTGTGTTTTGTTGATAA s panTro1.chr12 25308478 77 - 117159028 TTACACAAATTCTTAATGATCGCAAAAGTAGATGATTGGGCTACTGTGTCATTTTTCTACCTGTGTTTTGTTGATAA s mm5.chr6 118909549 75 + 149721531 ATTCTTAAATTCTTAAAAGTCTGAAATGTAGATGATTTGATAAC--TATTATTTCTCTAGCTATGTTTTGTGGGTTA s rn3.chr4 155060764 75 + 187371129 CTTAATAAATTCTTAAAAGTCTGAGAAGCAGATGACTTGGTGAC--TATAATTTCTCTAGCTATGCTCTGTGGGTTA s canFam1.chrUn 75559746 74 - 91062872 TTACATAATTTCTTAAAAATTTAAAAAGTAGAT---TTGGCAATTGTGCCATTTTTCTGGATGTATTTCATAATTAA a score=7077.0 s hg17.chr13_random 3017 46 + 186858 TATGCAAAATTTAG----------GAATAATGAAGAAAAATGATGTATGTCAATAT s panTro1.chr12 25308555 46 - 117159028 TATGCAAAATTTAG----------GAATAATGTAGAAAAATGATGTACTTCAATAC s mm5.chr6 118909643 54 + 149721531 CATGCAAAGGTCGAACCCCTAACTGCATCCTGTTTTAAAGGTATGCACTTC--TGA s canFam1.chrUn 75559820 46 - 91062872 TGTACAAAATTTAA----------AGATCATAAGCAAAAATTATGCATTTCAATAT a score=72186.0 s hg17.chr13_random 3063 214 + 186858 AGCTTACAGATGAAAC--TTTTTTGGCTTCACAAAGACATACTTATTATCATAACTGATACAATTTTCATACTACAGTGCTCTCTTGCTTTATAAATACTCAAGTTATTTTGTGTGCTGCTTC------------------------------------------------------------AAATTTTACTTTTGTGCGTCACCTTCCATCTCCTTAGTACATCTTATAGTAGCTGTAAGTTGATCCTGTATTTCTTGAAACTAAAACAAAGAA s panTro1.chr12 25308601 214 - 117159028 AGCTTACAAATGAAAC--TTTTTTGGCTTCACAAAGACATACTAATTATCATAACTGATATAATTTTCATACTACAGTGCTCTTTTGCTTTATAAATACTCAAGTTATTTTGTGCGCTGCTTC------------------------------------------------------------AAATTTTACTTTTGTGCGTCACCTTCCATCTCCTTAGTACATCTTATAGTAGCTGTAAGTTGATCCTGTATTTCTTGAAGCTAAAACAAAGAA s mm5.chr6 118909697 203 + 149721531 AACTTAGAGGTGAAGCGGTGTCCTGGCTTC----AGAGGTACT-GCTACCATAACTGGCACAGTAGCCACAATATATTGCTTATTTGCTTCCTAAACACTGGAGTCACACTGTGT--------------------------------------------------------------------AAACTGTACTTTTGTAGGTGGTCTTCCATCTTCTCAGCATGGTGTACAGCCTCTCTGTGTTGATCCCGCGCCTCCTGCAACTGGAATAAAGAA s rn3.chr4 155060912 191 + 187371129 AACCTAGAGGTGGAACAGTGCCCTGGCTTC----AGAGGCCCT-GCTTCCACAGCTGACACAA---------TACACTGCTCATTTG-TTTATGAACACTGGAGTCA---------CTGCTT-------------------------------------------------------------AAACTGTACTTTTGTAGGTGGTCCTGCATCTTCTCAGCGCGCTGAACAGCCTCTCTGTGTTGGTCCTGCGCCTCTTGCAGCTGGAATAAAGAA s canFam1.chrUn 75559866 273 - 91062872 CACGCAAAGCTGAAATTTTTACCCAGCTAAACAATGATGTATT---TATCATAATGGATATATTTCTTATACTATACTACTTATCTGCTTTATAAATACTCAAGTTATTTTCTGTGCTGCTTTAAATtatctctgcctctctgtgtgtctcttatgaataaagaaataatctttttttaaaaaaaaTTATACTTTTGTATGTGATCTTGTGACTTCTCAATACATCCTACAGCCTCTGTATATCGATCCTGTGCTTCACGTAACTAAAAGAGAAAA a score=0.0 s hg17.chr13_random 3277 70 + 186858 TTAAAAAAAATTACatttggaaatgacctaaatgtccatcagtagatgaatgaatcaacaaaatatatat a score=2701.0 s hg17.chr13_random 3277 8 + 186858 TTAAAAAA s panTro1.chr12 25308815 8 - 117159028 TTAAAAAA s mm5.chr6 118909900 8 + 149721531 TAAAACAA s rn3.chr4 155061103 8 + 187371129 TAAAACAA a score=1837.0 s hg17.chr13_random 3285 18 + 186858 AATTACatttggaaatga s panTro1.chr12 25308823 18 - 117159028 AATTACatttagaaatga s mm5.chr6 118909908 14 + 149721531 ----ACCTTTACTAATGA s rn3.chr14 25884233 8 - 112220682 ----------TAAAATAA a score=696.0 s hg17.chr13_random 3303 4 + 186858 ccta s panTro1.chr12 25308841 4 - 117159028 ccta s mm5.chr6 118909922 4 + 149721531 GCTA a score=0.0 s hg17.chr13_random 3303 22 + 186858 cctaaatgtccatcagtagatg a score=1701.0 s hg17.chr13_random 3307 18 + 186858 aatgtccatcagtagatg s panTro1.chr12 25308845 18 - 117159028 aatgtccatcagtagatg a score=1555.0 s hg17.chr13_random 3325 22 + 186858 aatgaatcaacaaaatatatat s panTro1.chr12 25308863 22 - 117159028 aatgaatcaacaaaatatatat s rn3.chr14 25884241 15 - 112220682 AATGAGCAGTGAAAA------- a score=460.0 s hg17.chr13_random 3347 85 + 186858 aaaatATTTTAGACTA-TCACAATCTTTTTTATTTAAAAAAGGTCAGAATCTAGGATAAATCAT--cccattacctgtttt-ttgtaat s panTro1.chr12 25308885 85 - 117159028 aaaatATTTTAGACTA-TCACAATCTTTTTTATTTAAAAAAGGTCATAATGTAGGAGAAATCAT--cccattacctgtttt-ttgtaat s rn3.chr14 25884256 42 - 112220682 -------------------ACAAAGTTGTTAATTC-----------------------AGTCTG--CCCTTTACCCATTTTCCTGC--- s canFam1.chrUn 75560139 50 - 91062872 GAAATACTTTTAACTACTGACAATCT--------------------------AGTATAAATCATAACCTGTtaaac------------- a score=19099.0 s hg17.chr13_random 3432 145 + 186858 taattttagtgggacactgccacatcccttcaatctgcatattgttcgtggctacttttgtgctataactgcag----ggcttgagttattgcaacaatgatattatggctcacaaagtcttaag----taatactatctggccctttacaga s panTro1.chr12 25308970 144 - 117159028 taattttagtgggacactgctacaccccttcagtctgcatatcgttcatggctacttttgtgctgtaattgcag----ggct-gagttattgcaacaaagatcttatggctcacaaacccttaaa----taatactatctggccctttacaga s mm5.chr7 25144986 135 - 133051633 AAATCTTATTAGTACACAGCCATCATCCTATTGTCTGCGTGCTG---AGGGGAACTTCTATGCAATTGCTGTGGCATTAGCT-GAATTATTGCAAGAGGGATCTTAT-CCCCACCAAATCTAAAAT-GCTATTATTATCTG------------ s rn3.chr14 25884299 149 - 112220682 AGGATTCGTGAGAACATGGCCGTGCCCCTTCAATCGG-ATGTTGTCTATAGAAACTTTTATACTGTAACTGTAGAGTTAACT-GAGCTCTCACAACAGAACTTTTAG-CTCTACCATACCTGAGGGAATGAATGCTATCTG-CTATCTACAGA s canFam1.chrUn 75560189 116 - 91062872 aaaatttcactggacatagacac----------tctacatactg-----------atttatg--gttacagcag----aatt-gtactgctacaatagaga-cctat-atctacaaagcccaaaa-------tatttacaatccctttacaga a score=-374.0 s hg17.chr13_random 3577 3 + 186858 -aaa s panTro1.chr12 25309114 2 - 117159028 -aa- s canFam1.chrUn 75560305 3 - 91062872 aaa- a score=36788.0 s hg17.chr13_random 3580 122 + 186858 gttcacagacccctgCTCTAGAACTAAAACACAACATTCTTCTTGCTTTTGAATTACATTTTATCAGTTAAATACTCAAACTTG-CAAACTGGTAAAATGTGGAAAGATAAAGGATTACCTCA s panTro1.chr12 25309116 122 - 117159028 gttcactgacccctgCTCTAGGACTAAAACACAACATTCTTCTTGCTTTTGAATTACATTTTATCAGTTACATACTCAAACTTA-CAAACTGGTAAAATGTGGAAAGATAAAGGATTACCTCA s mm5.chr7 25145121 110 - 133051633 AGTCGCTGG--TCTGTCTTATGACTGAAACATGGTA---TTCTGGTTTTGAAACCATACTTTCTCAG----ATACTCAAATTGACCAAATTGGTAA----CTGAGAAAAAAAGTACTGCCTCA s rn3.chr1 88548406 113 - 268121971 AGTCACTGA--TCTGTCTTATGACTGAAA-ATGCCA---TTCTGGTTTTGAAACCATACTTTCTCAG----ACACTAAAATTGACGCAATTGGTAAATGAGGGAGGGAAAAAGGAAATCCTAT s canFam1.chrUn 75560308 121 - 91062872 gcttactgaccactCTTCTAGTATTAAAACATAACATTTTTAATGTTTTTAAATTATGTTTTATCAG-TAGATATACAAATTTA-TATATTGTTCAAAGGAGGAAAGACAGGAAATTACCTTA a score=91.0 s hg17.chr13_random 3701 1 + 186858 A s galGal2.chr17 5538239 1 + 10632206 A a score=3883.0 s hg17.chr13_random 3702 34 + 186858 TGCTAAGCATTTAT-ATTTTGAATTCCAAACACTA- s panTro1.chr12 25309238 34 - 117159028 TGCTAAGCATTTAT-ATTTTGAATTCCAAACACTA- s rn3.chr1 88548521 29 - 268121971 TGTTGAAAATTTGC-AT-----GGTCCAAGTACTG- s canFam1.chrUn 75560429 35 - 91062872 TAGTAAATATTTCTAATTTTCTATTCCCAGCACCA- s galGal2.chr17 5538240 32 + 10632206 TGCCAAGAAACT---ATGTGCAAGTCCAAA-ACAGA a score=-873.0 s hg17.chr13_random 3736 2 + 186858 -CC s panTro1.chr12 25309272 2 - 117159028 -CC s rn3.chr1 88548550 2 - 268121971 -CC s galGal2.chr17 5538272 2 + 10632206 AT- a score=-278.0 s hg17.chr13_random 3736 6 + 186858 CCACAT-- s galGal2.chr17 5538272 6 + 10632206 --ATATTA a score=-303.0 s hg17.chr13_random 3738 4 + 186858 ACAT-- s panTro1.chr12 25309274 4 - 117159028 ACAT-- s galGal2.chr17 5538274 4 + 10632206 --ATTA a score=2979.0 s hg17.chr13_random 3742 9 + 186858 CAACTATAA s panTro1.chr12 25309278 9 - 117159028 CAACTATAA s canFam1.chrUn 75560464 9 - 91062872 CAATTATAA s galGal2.chr17 5538278 9 + 10632206 CAACTGTTT a score=1332.0 s hg17.chr13_random 3751 2 + 186858 TT s panTro1.chr12 25309287 2 - 117159028 TT s mm5.chr16 83573573 2 - 98801893 TT s canFam1.chrUn 75560473 2 - 91062872 TT s galGal2.chr17 5538287 2 + 10632206 CT a score=-2908.0 s hg17.chr13_random 3753 3 + 186858 TTA--------------- s panTro1.chr12 25309289 3 - 117159028 TTA--------------- s mm5.chr16 83573575 3 - 98801893 CTT--------------- s rn3.chr15 59883635 3 - 109774626 TTT--------------- s canFam1.chrUn 75560475 3 - 91062872 TTA--------------- s galGal2.chr17 5538289 18 + 10632206 TTCAGTGAAGACCAACCA a score=369704.0 s hg17.chr13_random 3756 466 + 186858 TTTTTTGTATGTATGCATTTAGTTTTATTATAGCAAAGCAACTTGCACATTTT-------TAAATATTTAAAACTAA-GCGTCATC--------TTTCCTTTCTAGAG---------------AAACAACAAGAAAATTTAAAAACAAG--------------------------------------CAGGAACAAAATTAAAAT---------CGACAAA----GTCAGTTCCAAATAAGATCCTACAGGATCTTATTGACTCTCCCATTGAATAGCAGGACTC-AAGTCATCATTAGGAGAGAA--GTAATTTAAAAGCGTCATCTTAAACTGCAAAGATGTCC-------------ATTAAACATGTCAAAGG---AGAAACCTTGTTGTCTAAATGCCCACTTAACCAACCCGAACATCTCAAACTCATCCTTTGCTGACCTTCTATA-----ACCCCTTTTTTAGTTTAGCTT--------------------TTTCTATAAATAAGAGAAA----ATAGATACATGTTGGCAAATGCTAACTGTCCATATTCATATAGAGACAAAATGTGCTCTCTGAGCCCAAT----AGAGA s panTro1.chr12 25309292 471 - 117159028 TTTTTTGTATGTATGCATTTAGTTTTATTATAGCAAAGCAACTTGCACATTTT-------TAAATATTTAAAACCAACGCGTCATC--------TTTCCTTTCTAGGG---------------AAACAACAAGAAAATTTAAAAACAAG--------------------------------------CAGGAACAAAATTAAAAT---------CGACAAA----GTCAGTTCCAAATAAGATCCTACAGGCTCTTATTGACTCTCCCATTGAATAGCAGGACTC-AAGTCATCATTAGGAGAGAA--GTAATTTAAAAGTGTCATCTTAAACTGCAAAAATGTCC-------------ATTAAACACACCAAAGG---AGAAGCCTTGTTGTCTAAATGCCCACTTAACCAACCCAAACATCTCAAACCCATCCTTTGCTGAACTTCTATA-----ACCCCCATTTTAGTTTAGCTT--------------------TTTCTATAAATAAGAGAAA----ATAGATACATGTTGGCAAATGCTAACTGTCCATATTCATATAGAGACAGAGTGTGCTCTCTGAGCCCAATACAAAGAGA s mm5.chr16 83573578 535 - 98801893 TTTTTTTTGTGTACACACTGA-TTTTATTGTAACAAAGCAACTTGTACACTTC---------AACATTTAAAATGA--GCATCTTTTTCTTCCATTTTCCTTCCAGTGAAAACAAAAAAAACAAAAAAACAAAAAAAACAAAAAAAAAGAAAGAAAGAAAAGAAAAGAAAGAAAGAAAAGGAAAAAAAAGGAAAAAAATTAAAAT-------TACAACAGA--ATGTCAACTCCAAATAAAACCGTACAGGTTC-TGCTGATTCTCCCATTGAGTGTCAGAGCTC-AGGTCATCATCAGGAGAGAA--TTTTATTTTAAGTGTCACTTTAAATTGCAAGGATGTCTGTTAAACCACACAATTAAACATGCCAAAGG---AAAAGCCATGTTGTC-AGATGCCCAC----CTACCCCAGACACCTCAAACCCA-CCCTTGCTCACCGTCTATACCCTCACCCCCTTTTT-------TCT--------------------TTTTATTAAACAAGAGAAAGTAGACAGATACATGTTGGTAAATGCTAAATGTTTGTATTCACATAGAGATACAGTGTAATCTCTGAGCCCAAT----ATACA s rn3.chr15 59883638 497 - 109774626 TTTCCTTTGTGTACACATTGA-TTTTATTGTAACAAAGCAACTTGTACACGGC---------AACATTTAAAATGA--GCATCT----------TTTTCCTTCCAGTGAAAACCGAA------AAAGAAAAAAAAAGAGGAAAAAAAAG------------------------------------GAAAAGAAAAAAATTAAAGATAAAAGTTACAACAGAGAATGCCAACTTCAAATAAAACCCTACAGCTTC-TGCTGATTCTCCCACTGAGTGGCAGGGCTC-AAGTCTTCATCAGGAGAGAG--TTTTATTTTAAGTGTCACCTTAAACGGCAAGGATGTCTGTTAAACGTCACAATGAAACGTGCCAAAGG---AGAAGCCATGTTGTC-AGATGCCCAC-TACCCACCC--AACACCTCAATCCAA-CCCTTGCTCACTGTCTATACC---CCCCCTTTTTCTTTTTTTCCT--------------------TTTTATTAAACAAGAGAAAGTAGATAGATACATGTTGGTAAATGCTAACTGTCTATATTCACATAGAGACACAGTGTAATCTCTGAGCCCAAT----ATACA s canFam1.chr38 12915627 491 + 26492144 TTTTGTGTGTGTACACATTTAGTTTTATTGTAACAAAGCAACTTGTACACTTTTAACTTTTAAAAGTTTAAAACTGA-GCATC-----------TTTCCTTTCCAGTG---------------AAACAAAAAGAAAATTTCAAAATAAA--------------------------------------CAGGAACAAAATTA-------------CAATAGAGAATGTCAATTCCAAATAAGATCCTACAGGTTC-TGCTGATTCTCCCATCGAGTGGCAGGGCTC-AAGTCATCATTAGGAGAGTT--TTATTTTAAAAGTGTCATCTTAAACTGCAAGGATGTCCATTAAA---CACAATTAAACATGCCAAAGG---AGAAGCCATGTTGTCAAAATGCCCACTTAACCCACCCAATCATCTCAAACCCACCCTTTGCAGACCTTCTATA-----ACCTCattttttatttattttttttttta------------tttttttaaaCAAGAGAAAGTAGACAGGTACATGTTGGTAAATGCTAACTGTCCATATTCATATAGAGACACAGTGTAATCTCTGAGCCCAAT----ATACA s galGal2.chr17 5538307 501 + 10632206 GTCCCTTTGTGTACACATTTAGTTTTATTGTAACAAAGCAACTTGTACACTTT---------AACGTTTAAAACTGA-GCATCTTTC-------TTTCCTTTCCAGTGAAACA----------AAAAAAAAAAAGAATTTAAAAATAAA--------------------------------------CAAGAACAAAATTA-------------CAATAGAGAATGTCAATTCCAAATAAGATCCTACAGGTTC-TGCTGATTCT-CCATCAAGTGGCAGGGCTCAAAGTCATCATTAGGAGAAGATTTTATTTTAAAAGTGTCATCTTAAACTGCAAGGATGTTTGTTAAACATCACAATTAAACATGCCAAAGGAGAAGAAGCCATGTTGTCAAAATGCCCACTTACCCCACCCACACATCTGAAACCCACCCCAGGCTGACCTTCTATA-----ACCCCAttttt-------ttt---ttttagctttttctttttttttttAAACAAGAGAAAGTAGACAGATACATGTTGGTAAATGCTAACTGTCCATATTCACATAGAGACACAGTGTAATCTCTGAGCCCAAT----ATACA a score=4118.0 s hg17.chr13_random 4222 5 + 186858 GTAAG s panTro1.chr12 25309763 5 - 117159028 GTAAG s mm5.chr16 83574921 5 - 98801893 GTAAG s rn3.chr15 59884867 5 - 109774626 GTAAG s canFam1.chr38 12916120 5 + 26492144 GAAAG s galGal2.chr17 5538808 5 + 10632206 GAGAA a score=0.0 s hg17.chr13_random 4227 10 + 186858 GATTTTCATC a score=1910.0 s hg17.chr13_random 4227 2 + 186858 GA s panTro1.chr12 25309768 2 - 117159028 GA s mm5.chr16 83574926 2 - 98801893 GA s rn3.chr15 59884872 2 - 109774626 GA s canFam1.chr38 12916125 2 + 26492144 GA a score=7460.0 s hg17.chr13_random 4229 8 + 186858 TTTTCATC s panTro1.chr12 25309770 8 - 117159028 TTTTCATC s mm5.chr16 83574928 8 - 98801893 TTTTCATC s rn3.chr15 59884874 8 - 109774626 TTTTCATC s canFam1.chr38 12916927 8 + 26492144 TTTTCATC a score=10795.0 s hg17.chr13_random 4237 10 + 186858 AAAATAAAAA s panTro1.chr12 25309778 10 - 117159028 GAAATAAAAA s mm5.chr16 83574936 10 - 98801893 AAAATAAAAA s rn3.chr15 59884882 10 - 109774626 AAAATAAAAA s canFam1.chr38 12916935 10 + 26492144 AAAATAAAAA s galGal2.chr17 5538813 10 + 10632206 AGAAGGAAAA a score=0.0 s hg17.chr13_random 4247 33 + 186858 TTTATTCAGTAAAATGGCCTTTCTGAACAAGTT a score=910.0 s hg17.chr13_random 4247 1 + 186858 T s panTro1.chr12 25309788 1 - 117159028 T s mm5.chr16 83574946 1 - 98801893 T s rn3.chr15 59884892 1 - 109774626 T s canFam1.chr38 12916945 1 + 26492144 T a score=5243.0 s hg17.chr13_random 4248 11 + 186858 TTATTCAGTAA s panTro1.chr12 25309789 11 - 117159028 TTATTCAGTAA s mm5.chr16 83574947 11 - 98801893 CTATTCTGTAA s rn3.chr15 59884893 11 - 109774626 CTATTCTGTAA s canFam1.chrUn 75563004 10 - 91062872 TTAGTCA-TAA a score=91.0 s hg17.chr13_random 4259 1 + 186858 A s panTro1.chr12 25309800 1 - 117159028 A a score=60.0 s hg17.chr13_random 4259 2 + 186858 AA s canFam1.chrUn 75563014 2 - 91062872 AG a score=273.0 s hg17.chr13_random 4260 1 + 186858 A s panTro1.chr12 25309801 1 - 117159028 A s mm5.chr6 118912740 1 + 149721531 A a score=10494.0 s hg17.chr13_random 4261 19 + 186858 TGGCCTTTCTGAA-----CAAGTT s panTro1.chr12 25309802 19 - 117159028 TGGCCTTTCTGAA-----CAAGTT s mm5.chr6 118912741 24 + 149721531 TGGCCGTTCTGTATCGTTCAAGTT s rn3.chr4 155064155 19 + 187371129 TGGCCTTTCTGTA-----CCAGCT s canFam1.chrUn 75563016 19 - 91062872 TAACCTTTCTGTA-----AAAGTT a score=23136.0 s hg17.chr13_random 4280 126 + 186858 AACCTGAAATCTATGAAATAAGTACACACAGGTTCTTTATACATTCAGAAA-----AGTAGA-AACTAAAAATAAGATAA-TTTTCTGAAACATTCCATTAGACAT--TGTCCTCTGAATTAATCTGGCTTGCCT------ s panTro1.chr12 25309821 127 - 117159028 AACCTGAAATCTATGAAATAAGTATACACAGGTTCTTTACACATTCAGAAA-----AGTAGAGAAATAAAAATAAGATAA-TTTTCTGAAACATTCCATTAGACATAATGT--TCTGAATTAATCTGGCTTGCCT------ s mm5.chr6 118912765 117 + 149721531 ATCTTGAAGTTCATTAAATAAGT-TTCAAAGATACTGTACCCACTCATAAA-----AGTGGG-GGTAAAAAGTAGGCAGA-TTTTCTGGAACTTTCCA-TAAACAGAA-----TCTGAGTT----TAACCTACTT------ s rn3.chr4 155064174 120 + 187371129 ATGTTGAAATTCATTAAATAAGT-TTCAAAGATACTGTATCCACCCCCGAA-----AGTGGG-GGTAAAGAGCAGGCAGATTTTTCCGGAACATTCCA-CAAGCAGCATC---TCTGAGTT----TAACCCACTT------ s canFam1.chrUn 75563035 109 - 91062872 ATCCTGAAATC---------AGT----ACAGAGTCTATATCTATCCATAAA-----AGTGAA-GATGAGAAATAAGATGA-TTTTCCGAAACATTCCA-TTAATATCT-----TCTGATTTTAGCTAGCTCGCCT------ s galGal2.chr17 5538823 126 + 10632206 AAGCTAGATTCTATGCACTAC---TACACAGGGGCCTAG--CACTCTTCAGCTTCCAGCAGA-GTGAAGGGAGCAGAAGG-TTTTCTTT--TTTCCCACAGAATATGGT----GTTGATTCCA--TAAACAGTTTTTGTTT a score=0.0 s hg17.chr13_random 4406 8 + 186858 CACCATGC a score=2302.0 s hg17.chr13_random 4406 4 + 186858 CACC s panTro1.chr12 25309948 4 - 117159028 CACC s mm5.chr6 118912882 4 + 149721531 TATC s rn3.chr4 155064294 4 + 187371129 TATC s canFam1.chrUn 75563144 4 - 91062872 CATC a score=157.0 s hg17.chr13_random 4410 4 + 186858 ATGC s canFam1.chrUn 75563148 4 - 91062872 ATGG a score=696.0 s hg17.chr13_random 4410 4 + 186858 ATGC s panTro1.chr12 25309952 4 - 117159028 ATGC s canFam1.chrUn 75563148 4 - 91062872 ATGG a score=157.0 s hg17.chr13_random 4410 4 + 186858 ATGC s canFam1.chrUn 75563148 4 - 91062872 ATGG a score=1148.0 s hg17.chr13_random 4414 11 + 186858 CAACAGAGAAA s canFam1.chrUn 75563152 11 - 91062872 TAATAGAGATA s galGal2.chr17 5538949 11 + 10632206 TGAGACAGAAA a score=793.0 s hg17.chr13_random 4414 3 + 186858 CAA s panTro1.chr12 25309956 3 - 117159028 CAA s canFam1.chrUn 75563152 3 - 91062872 TAA s galGal2.chr17 5538949 3 + 10632206 TGA a score=1148.0 s hg17.chr13_random 4414 11 + 186858 CAACAGAGAAA s canFam1.chrUn 75563152 11 - 91062872 TAATAGAGATA s galGal2.chr17 5538949 11 + 10632206 TGAGACAGAAA a score=2289.0 s hg17.chr13_random 4417 8 + 186858 CAGAGAAA s panTro1.chr12 2951951 8 - 117159028 TAGAGAAA s canFam1.chrUn 75563155 8 - 91062872 TAGAGATA s galGal2.chr17 5538952 8 + 10632206 GACAGAAA a score=3643.0 s hg17.chr13_random 4425 12 + 186858 TCATTAAAAA--------TA s panTro1.chr12 2951959 12 - 117159028 TCACTAAAAA--------TA s mm5.chr6 118912886 12 + 149721531 TCAATTGGAA--------TA s rn3.chr4 155064298 12 + 187371129 TCAATTGGAA--------TA s canFam1.chrUn 75563163 20 - 91062872 TTATTAAAAAGCATTGTTTA s galGal2.chr17 5538960 12 + 10632206 GGGATAAAAA--------TG a score=-3035.0 s hg17.chr13_random 4437 107 + 186858 GA-CTGTTTAACAGGAAA-AAAAAC--------TCTCTC--AACTTCTGTGAGAAATGA-TGCATAATTCTCA----ACTTTCCTAAGGTTAAATATTTAAGAAAAA---A--------TATGCATAAAAAAATG s panTro1.chr12 2951971 108 - 117159028 GA-CTGTTTAACAGG----AAAAAC--------TCTCTCAGAACTTCTGTGAGAAATGA-TGCATAATTCTCA----ACTTTACTAAGGTTAACTATTTAAGAAAAAAATA--------TATGTAT-AAAAAATG s mm5.chr6 118912898 80 + 149721531 G------------------AAAAA-----------TCTC----------TGAGGAACGA-TATATAGCTCTCA----ATTTGCACAAGGATAAATATATTAAAGAAAGACG--------AAATTAT-AAGAAA-- s rn3.chr4 155064310 91 + 187371129 G------------------AAA-----------TCTCTC----------TGAGGAATTA-CATATGGTTCTCA----ATTTGCATAAGGATAAATATCTTAAAGAAAGACAAGAAATTTTAAGAAAAAAAAAATG s canFam1.chrUn 75563394 104 - 91062872 -aTTTGTTTAGCAGGAA--AAAAAG--------TCCCTC--AATTTGTGTGAATAATAATTGCATAAGTCTCA----ACTTTCCTAG---TAAATGCTATAAGCAAAAACA--------TATAACA-CAGATA-- s galGal2.chr17 5538972 97 + 10632206 ---------AACTTGAAACAGAAACCGGCAGATTCTTTT----------------CCAC-TGTGTTCTGCTCAAGGTATTTTCCCCAAATTAAAT--TGTGAACCATGGTG--------TAGAGGAGAGAAAA-- a score=-5526.0 s hg17.chr13_random 4544 11 + 186858 -------GCAGAATAAA----A s panTro1.chr12 2952079 15 - 117159028 -------GCAGAATGAAGACCA s mm5.chr6 118912978 6 + 149721531 ---------AAGATG------- s canFam1.chrUn 75563498 11 - 91062872 -------GCAGAATGGAA---- s galGal2.chr17 5539069 11 + 10632206 AGAGACCTCAA----------- a score=1146.0 s hg17.chr13_random 4555 4 + 186858 GAGA s panTro1.chr12 2952094 4 - 117159028 GAGA s galGal2.chr17 5539080 4 + 10632206 GAGA a score=510.0 s hg17.chr13_random 4555 9 + 186858 GAGATTAAG s galGal2.chr17 5539080 9 + 10632206 GAGAACAAG a score=-1115.0 s hg17.chr13_random 4559 1 + 186858 ----------------T s panTro1.chr12 2952098 1 - 117159028 ----------------T s mm5.chr6 118913132 17 + 149721531 TTAAGCCTGTTCCCTCA a score=3025.0 s hg17.chr13_random 4560 4 + 186858 TAAG s panTro1.chr12 2952099 4 - 117159028 TAAG s mm5.chr6 118913149 4 + 149721531 CAAG s rn3.chr4 155064558 4 + 187371129 CAAG s galGal2.chr17 5539085 4 + 10632206 CAAG a score=1958.0 s hg17.chr13_random 4564 15 + 186858 ATATAGGTGCGtta------t s panTro1.chr12 2952103 21 - 117159028 ATATAGGTGCATTATAAAGCt s mm5.chr6 118913153 15 + 149721531 AAGCAAATGCATTC------T s rn3.chr4 155064562 15 + 187371129 AAGTAAATGCATTT------G a score=0.0 s hg17.chr13_random 4564 15 + 186858 ATATAGGTGCGttat a score=2109.0 s hg17.chr13_random 4579 28 + 186858 aataaaattttaataaaattaataataa--------- s panTro1.chr12 2952124 28 - 117159028 aataaaattttaataaaattaataataa--------- s mm5.chr6 118913168 35 + 149721531 --TTAAAATCAAAGGAAAAAAATGGTAAAATCAAAGT s rn3.chr4 155064577 33 + 187371129 TGTTTAAGTCAAAGAAAAAAAAAGGTAGAATAA---- s canFam1.chrUn 75563509 20 - 91062872 AGTCAGAATTTAATAAA--------TAA--------- a score=-8446.0 s hg17.chr13_random 4607 27 + 186858 G----GAAAATACAAAAGAAAGCCATCCACt---- s panTro1.chr12 2952152 15 - 117159028 t----GAAAATACAGAAGA---------------- s mm5.chr6 118913203 23 + 149721531 G----GAATTTAAGAAATAAGTTCATC-------- s rn3.chr4 155064610 27 + 187371129 GAGTGGAGTTTAAGAAATAAGTTCATT-------- s canFam1.chrUn 75563529 22 - 91062872 -----GTGCATGGTGAAGACACTAAAA-------- s galGal2.chr17 5539099 27 + 10632206 ----ACAAGAAAAAAAAGACAGCAACT----TGCT a score=336.0 s hg17.chr13_random 4622 12 + 186858 AAGCCATCCACt s panTro1.chr12_random 3627819 12 - 38776634 AAGCCATCCACt s mm5.chr6 118913214 12 + 149721531 AATAAGTTCATC s rn3.chr4 155064625 12 + 187371129 AATAAGTTCATT s canFam1.chrUn 75563539 7 - 91062872 AAGACAC----- s galGal2.chr17 5539114 12 + 10632206 CAGCAACTTGCT a score=10377.0 s hg17.chr13_random 4634 42 + 186858 ataaaattttaataaaattaattataataaaaataCAAAAGA s panTro1.chr12_random 3627831 42 - 38776634 ataaaattttaataacattaattatcataaaaataCAAAAGA s mm5.chr6 118913226 37 + 149721531 ATAAA-----GGTAATGGTGGATTACATGAAAATCCAGAGGA s rn3.chr4 155064637 37 + 187371129 GTAAA-----GGTAATGGCAGATTACATGAAAACCTAAAGGG s canFam1.chrUn 75563546 36 - 91062872 -TAAAATTATGCTAA-----ATTAAAATGAAAATACAAAACA a score=6226.0 s hg17.chr13_random 4634 132 + 186858 ataaaattttaataaaattaattata-------ataaaaataCAAAAGAAAGCCATCCACTAAAATTAGTACCCCAAAACACTTTATATTAGTTAGCTAGCTACAGATGAACAGTTGTTGGCATGCAAAGTTTCATACA s panTro1.chr12 2952167 90 - 117159028 -------------------------------------------------AAGCCATCCACTAAAATTAGTACCCCAAAACACTTTGTATTAGTTAACCAGCTACAGATTAACTGTTGTTGACATGTGAAGTTTCATACA s mm5.chr6 118913226 87 + 149721531 -----------ATAAAGGTAATGGTGGATT-ACATGAAAATCCAGAGGAAGGCTGTCTGCTGACAC---CATCCCGA------------------------------------GCAGCTGGCATACCAAA-TTCATACA s rn3.chr4 155064637 87 + 187371129 -----------GTAAAGGTAATGGCAGATT-ACATGAAAACCTAAAGGGAGGTGGCCTGCTTTAGT---CATCC---------------------------------TGA---GCAGCGGGCATACCAAA-CTCATACG s canFam1.chrUn 75563551 117 - 91062872 ------------------TTATGCTAAATTAAAATGAAAATACAAAACAAAGTGGTCCATGGAAATTAGCATTCTACAACACTTTATATTATTTAAC-AGCTACAGACAA---ACTGTTGACATGTTATATTTAATACA a score=102930.0 s hg17.chr13_random 4766 150 + 186858 TACTTGACTTCTCATCTGGTCTAATTTCTTCCTTGAATCCTGCATCTCATTTTCTAAATAGATGCAGTGACGCGATGAAGCATCCAGCAAAGCTTTTGTTGCTGATTGTTTGTTTAAGACATCATCTCGTTTTCATTGAAGCTGTCTCAC s panTro1.chr12 2952257 145 - 117159028 TACTCGACTTCTCATCTGGCCTAATTTCTTCCTTGAATCCTGCATCTCACTTTCT-AATGGATGCAGTGACGCGATGAAGCATCCAGCAAAGCTTTTGATGTTGATTCTTTG----GGACATCACCCAGTTTTTGTTGAAGTTGTCTCAC s mm5.chr6 118913313 150 + 149721531 TACCTGACTTCTGAGCTGACCTAATTTCTTCTTTAAGTCTCGCGCCTCTTCTTCTAAATTGCTGCGGTAGCGGGAGGAGACTTCCAGCGAAGCCTCTGACATCGACTGCTTTTTTAGGGTATCAGCCAATTCTTGCTGGAGTTGCCTCAC s rn3.chr4 155064724 150 + 187371129 CACCTGACTTCTGAGCTGACTTAAGTTCTTCTTTAAGTCTCTGGCCTCTTCTTCTAGACTGCTGCGGTAACGGGAGGAAACCTCTAGCGAAGCCTCTGACATGGACTGCTTTTTTAGGGTATCTGCCAGTTCTTGCTGAAGTTGCCTCAC s canFam1.chrUn 75563668 150 - 91062872 TACCTGACTTTTGATTTGATCTAATTTCTTCTTTAAATCCTGTACCTCATCTTCTAAATTAATACGATAATGCGATGTAACCTCCAATGAAGCCTCTGACATAGATTGTTTTTTCAGGGCATCAGCCAGTTCTTGTTGAAATTGTCTCAT s galGal2.chr1 166941260 150 - 188239860 TACCTTGGTTTTAACCCTGTCCAATTCCTTTTGCAAGCGCAATTTGTCTTCCTCAAGGTCACTGCGGTAGCGTGTAGTAACTTCAAGGGAAGCTTCTGACATAGACTGCTTTTTAAGAGCATCAGCAAGCTCCTGCTGTAGCTGTCTGAC a score=24843.0 s hg17.chr13_random 4916 48 + 186858 AGCTACCTGATGTT--ATTTTTGTTACTGATTTTACAAAT-CACCTTATTA s panTro1.chr12 2952402 49 - 117159028 AACTACCTGATGTT--ATTTTTGTTACTGATTTTACAAATGCACCTTATTA s mm5.chr6 118913463 48 + 149721531 AACTACCTGGTAAG--ACATTTGTTACTAATTTTATAAAA-CATATTACAA s rn3.chr4 155064874 48 + 187371129 AGCTACCTGATGAG--ACATTTGTTACTAATTTTATAAAA-CACATCACAG s canFam1.chrUn 75563818 50 - 91062872 AACTACCTAATAAGACACTTCTGTTACTGATTTTATAAAT-GATCTTATTA a score=16514.0 s hg17.chr13_random 4964 58 + 186858 TTAAACCATTAATAATATTTAACTCTAAAGCATATACTTTAAAAAATATCACCACACA s panTro1.chr12 25310508 58 - 117159028 TTAAACCATTAATAATATTTAACTCTAAAGCATACACTTTGAAAAATATCACCACACA s mm5.chr6 118913511 54 + 149721531 --CATCTACTCATACTATTTCTTTCTTC--CACACGCTCTGAGGAATATCACTGCACA s rn3.chr4 155064922 54 + 187371129 --CATATATTAACACCATTTATTTCCTC--CACACAGTCTGAGGAGTATCACTGCATA s canFam1.chrUn 75563868 48 - 91062872 ---TTATGTTAATAATATGTAATTCTAACATATGTACTT-------TATCACCACATA a score=173473.0 s hg17.chr13_random 5022 1175 + 186858 GATCGATTCACCTTCTTTTCCTCATGTGTACACATTCCTGTGTATTACTGAATCCAGTTAAGGATACAGAAGGTGTTATCTTCCTGCCAAACTGGTAT--TGTTATTCACACAACATATTCAGCC-CACTAGTCATTCCTCCCCTGATGAATCTGCAATGCTTAAAAACCT---GAAGTCTCAAAAATAAATGAGTATGTGGGTGAGACCGATGGTAGTAAATTATACATT-GTGGAATGATTTCCCTCTTTCTTTTTATTAGAAACTCAAATCAACCTCAGAGTTCCtcacgt--taaatcatctgcttaaatccttccaatagatgtctatctcagaagaaaagtaaa---attacagtggcctt-agatgctctaagtaacctgccctccacctcccaccctgactcagctgctatatctctcctccct------actcactccattccTACTCTATGTGAGTCCTGCCACTC---GTTAGTCTGAAATCCTCCTTAGTCTGAAAATGGGGATCCAGTGTCAAACTAATAAATCACAGATAGCTATGCCTCTTTTTGTCCTGGACAAAGTTATATCCAAATGATAG-TAATTGAGCCTTGAAATAAAAATTAGGAGCaaattttttatttaaaaa-tgaaagtaaattataaatGCCAGTGGGAAGATTAAATCAAATATGATTTGGCTAAAATTTACTGCATTTTCCCCATATTATAA-----GTAAAATTAAATGCCTTTGAA-AATAGAATGATCATATCTATACATAACTTGAGATTGAAATAGTTTCAGATTTAAGTCAAACTGACATGAAGAAAAACAAAATTTTACCAACT-AAGACATATTTAAAGCTACTGAAGAAAAGTAATTATGAAATAGGGAATACACTTCAGCTCATCTAGGAAATCTGAAATTAACTGTCAAAGTACCCCACTTTATTGAA--TCAACTTCAAAA-TACCATTTTAGGTATGAGCATTTCCATATATCTGATTTATCATGG-TCTTAAAATGT-TGCAAC-ATAAATACATTAAAATTATTATTTCAGTAGTAT----------------------GACTATATTATTACTATTAGTCTATATT----AACATTTTATAACTTA--------AAATTTTATAAGTGACACATTGACTTTAATCAGAGGAAAACATCTCTCAGATCTAACTTTGACTTGTTGGAAACAAGGAATGTTTCTAAGC---------AGATATATTTATCAT s panTro1.chr12 25310566 1202 - 117159028 GACAGATTCACCTTCTTTTCCTCATGTGTACACATCCCTGTTCATTACTGAATCCAGTTAAGGATACAGAAGGTGTTATCTTCTTGCCAAACTGGTAT--TGTTATTCACATAGCATATTCAGCC-CACTAGTCATTCCTCCCCTGATGAATCTGCAATGCTTAAAAACCTTCTGAAGTCTCAAAAAGAAATGAGTATGTGGGTGAGACTGATGGTGGTAAATTCTACATT-GTGGAATGATTTCCCTCTTT-TTTTTATTACAAACTCAAATCAACCTCAGAGTTCCTCACAT--TAAAtcatctgcttaaatccttccaatggatgtctatctcagaagaaaagtaaa---attccagtggcctt-agatgctctaagtaacctgccctccacctcccgccctaactcagctgctgtgtctctcctccctg-----actcactccattccTACTCTGCGTGAATCCTGCCACTCCTCATTAGTCTGAAATCCTCCTTAGTCTGAAAACGGGGATCCAGTGTCAAACTAATAAATCACAGATAGCTATGCCTCTCTTTGTCCTGGACAAAGTTATATCCAAATGATAG-TAATTGAGCCTTGAAATAAAAATTATGAGCAAATTTTTTGTTTAAAAACTGAAAGTAAATTATAAATGCCAGTGGGAAGATAAAATCAAACATGATTTGGCTAAAATTTACTGCATTTTCCCCATATTATAATATAAGTAAAATTAGATGCCTTTAAAGAATAGAATGATCATATCTATACATAATTTGAGATTGAAATAGTTTCAGATTTAAGTCAAATTGACATGAAGAAAAACAAAATTTTACCAACT-AAGACATATTTCAAGCTACTGAAGAAAAGTAATTATGAAATAGGGAATACACTTCAGTTCATCTAGGAAATCTGAAATTAACTGTCAAAGTACCCCACTTAATTGAA--TCAATTTCAAAAATACCATTTTAGGTATGAGCATTTCCATACATCTGATTTATCATGGGTCTTAAAATGTATGCAAC-ATAAATACATTAAAATTATTATTTCAGCAGTAT--------------------AAGACTACattattaatattagtctatatt----aacattttataactta--------aaattttataaGTGACACATTGACTTTAATCAGAGGAAAGCGTCTCTCAGTTCTAACTTTGACTTGCTGGAAACAAGGAATGTTTCTAAGCTGATATAGCAGATATATTTATCAT s canFam1.chrUn 75563916 1133 - 91062872 CATCAACTCACCTTCTTTTCCTAAAATGTACACACTGCTGT---TTATTGAATTTGGCTAAAGACACAAAAAGTGTTACCCTCCTGCTTAGTCAGTGTTATGTTACTTAGATAATTATTTCAACCTCACTACCCATT-CTTTGTTGATGAATTTGCAAAGCTTCCCAGCCTGCTGAAGTCTCAAAAAGAAATCAGTATATAAGTGAGACTAGCAGTGGTAAATTCTACATTAATGAAATGTTTTCTCTCT---TTTTTATTAGAGGCTTAAATTAACTTCCAAGTTCTTCACATAgtcaaccctttgctcaaaaccttccaataggttactatctcagaacaaaagtgaagtcattctaatggccttcaagccccctacataacctggcttctactccctccttgacctcagctcctagggctcccttccctgctcatgctcattccactcctgctacacaagaatcctgccacccctcAGTAG------------------CTGGAAATGGAGATCCAGGGACAAATCAATAAATCACAAAAG--TATAATTTTCTTTGTATTGGAAAAATTTATGCCCAAATGATAGTTAATTGAGTTTTGAAAT---------GAGCAAATTATTTG-------------AGTTATTTG-------------------------------AGTTTTGCTAAAACTCACCACAGTTATCCCAAATTATGATTTGATGAAAAATAGATGCCTTCAAAGAGTCAAAAGGTCATAAGAATAAATGATTTGAGAGtaaa--------------aaattaaatttatataaataaaGATAAAAGTATGCTAACCAAAAATGTATAAAAGGCTACCAAAAGAAAAGTACTGAGATACAGTATCTACACTTCAGTTCATGTGACAAATCTGGAATTAGCTGTCAAATTAATCCACTTAATTGAACTTCAATTTCAAAA-TACTCATTTAGGTATGAGCCTTTCCAGTTTTCTG-TTCATCATGG-TATTAAAATGT-GGTGACAATAACTACA--------ATTATTTTAGTAGTATTAACACTAAATTATTTTTTTAACACTCAATTACTAATATCAGCCTACTTTTTTAAAAAATTTATAACTTAACCTCTTGAAGTTTCATACATGACATGGCATTTTTAATCAAATTAAAGCACCTCTTAGGTCTAATTTTTATTTGCTGGATACAAG---------TACGCTG-------ACTTACACTCTCTAT a score=1092.0 s hg17.chr13_random 6197 2 + 186858 AT s panTro1.chr12 25311768 2 - 117159028 AT s rn3.chr4 155065508 2 + 187371129 AT s canFam1.chrUn 75565049 2 - 91062872 AT a score=0.0 s hg17.chr13_random 6199 7 + 186858 GTATCCT a score=-216.0 s hg17.chr13_random 6199 7 + 186858 GTATCCT s panTro1.chr12 25311770 6 - 117159028 GTATC-T s rn3.chr4 155065510 7 + 187371129 AGATTAT a score=20860.0 s hg17.chr13_random 6206 40 + 186858 TTTTTATATTCAACTAGATCCAATATTCAGCTGTAACCAA s panTro1.chr12 25311776 40 - 117159028 TTTTTATATTCAACTAGATCCAACATTCAGCTGTAACCAA s mm5.chr6 118914081 40 + 149721531 TTTTTTTTTTTAGCTAGACTTAATGCTTAGTATTAACAAA s rn3.chr4 155065517 40 + 187371129 TTTTTATATTTAGCTAGAATTAACACTTAGTATTAACAAA s canFam1.chrUn 75565051 40 - 91062872 TTTTTATGCTCAACTAGATTCAAAATTGAGCCATAATCAA a score=-265.0 s hg17.chr13_random 6246 1 + 186858 A s panTro1.chr12 25311816 1 - 117159028 A s mm5.chr6 118914121 1 + 149721531 C s rn3.chr4 155065557 1 + 187371129 C a score=3112.0 s hg17.chr13_random 6247 14 + 186858 TATTACTTTAAATT s panTro1.chr12 25311817 14 - 117159028 TATTACTTTAAATT s mm5.chr6 118914122 13 + 149721531 CA-TATTTTGAATT s rn3.chr4 155065558 6 + 187371129 AG--------AATT s canFam1.chrUn 75565259 14 - 91062872 CATTACTTTGAATT a score=22131.0 s hg17.chr13_random 6261 37 + 186858 TTGCTTCAGGAAGTTTGAAAAATACTTATTTTTCTTG s panTro1.chr12 25311831 37 - 117159028 TTACTTCAGGAAGTTTGAAAAATACTTATTTTTCTTG s mm5.chr6 118914135 37 + 149721531 TCCCTTTGGGATGTTTTTAAAATGTTTATCTTTCTTG s rn3.chr4 155065564 37 + 187371129 TCCCTTTTGGCATGTTTTAAAATATTTATCTTTCTTG s canFam1.chrUn 75565273 37 - 91062872 TTCTCTCAGGAAGCTTGAAAAATATTTGTCTTTCTGA s galGal2.chr1 166941611 35 - 188239860 TCACTTTATGA--TTTGAAACATTTTAATTTCTTCTA a score=469478.0 s hg17.chr13_random 6298 780 + 186858 -----ATA-CTTACTTCTCTTTCTGCTTTCTCTTTTTCATATTGGGGTTCTTTTTCTTTCAAATGATTCAATCCATTGACCATCCTTTTACTGTCTTCTTCTAGTAAAAGACGGTGCTTTCTGCACTCAGCTTGAAGGCTTTCTACTCTAGCATCACATCTGGCTTGAATATTAAGTATTGCTTTTTCTTGATTGTCAGCTTTGTTGCGAGCATCATCCAGTTGCTGTTGAAGCAACATATTTTGTTT----AGTTGACAAAATCT------------TTCCTGCTTTTCTATGCATTTTTCCATTGTACTGTATCCACTTTTGTACATTTTTTCAGTGTCCTTCATTCAACTCTGTTTTTGCTTTAGCTCACTTTGCACGTGTTCAAAAACCAAAGCCTTTTCTTTCAGAGCCTCTCTTGTGTAATGGAGCTCAGTTTCGAGGACTCTGGACTTACTCTCAGCTTTGGAAAGTTGCAGAGAAAGAATC----------------------AGA-ATACAAAAATTCAAATTTTCCTGTAAATGACACCATTTATCTACTGTGCCCTGGAAAGCAAGCTCTTGATCTTTTTCTGATGAGTGACTTTGATCATGATCACATAGAGCAGCATTCAGTCTACAACCACATGATTGCATTTCTGTTTCCAGTCTTTGCCTACTCTCTCTTTGCTTCTCCAGTTTGGAATGCAGCGTTGTGTTTTCATCTGTCAGAGCAGCAAGCTGTCCACTGTAACAGGCTATCGTTTTTGCTAATGTTTCCCCATTCCGTTTTAGAGCCTTTTGAAGGTCTTCACGCTTTCTTTTCA s panTro1.chr12 25311868 776 - 117159028 -----ATA-CTT----TTCTTTCTGCTTGCTCTTTTTCATATTGGCGTTCTTTTTCTTTCAAATGATTCAATTCATTTACCAACCTTTTACTGTCTTCTTCTAGTAAAAGACAGCGCTTTCTGCACTCAGCTTGAAGGTTTTGTACTCTAGCATCACATCTGGCTTGAATATTAAGTATTGCTTTTTCTTGATTGTCAGCTTTGTTGCGAGCATCATCCAGGTGCTGTTGAAGCAACATATTTTGTTTTTTTAGTTGACAAAATCT------------TTCCCGCTTTTCTGTGCATTTTTGCATTGTATTGTATCCACTTTTGTACCTGTTTTCAATGTCCTTCATTTGATTCTGTTTTTGCTTTAGCTCACTTTGCACGTGTTCCAAAACCAAAGCCTTTTCTTTCAGAGCCTCTCTTGTGTAATGGAGCTCAGTTTCGAGGACTCTGGACTTACTCTCAACTTTAGAAAGTTGCT----AAGAATC----------------------AGA-ACACAAGAATTCAAATTTTCCTGTAAATGACACAATTTATCTACTGTTCCCTGGAAAGCAAGCTCTTGGTCTCTTTCTGATGAGTGACTTTGATCATGATCACATAGAGCAGCATTCAGTCTACAACGGTATGATTGCATTTCTGTTTCCAGTCTTTGCCTGCTCTCTCTTTGCTTCTCCAGTTTGGAATGGAGCGTTGTGTTTTCATCCATCAGAGCAGCAAGCAGTCCACTATAACAGGCTATCGTTTTTGCTAATATTTCCCCATTCCATTTTACAGCCTTTTGAAGGTCTTCATGCTTTCTTTTCA s mm5.chr6 118914406 817 + 149721531 -----ATA-CTCACCTCTCTTTCGGCTTTCTCGTTCTCGTACTGACACAGTCTTTCTCTTAGATGGCTGCACTCACTGACTAACTCCTGGTTTCTGTCTTCTAGCCTCAGGCTGTGCCGCTGACTCTCAGCTTGGAACCTGGTTAGCACATCCTGGAACTGGTCTTGGATGTTGACTATGGTCTTGTCTTTGCTCTCGGCCTTGTTGGCAGCGTCGTCCAGCTGCTGCCGGAGCAGCGTGTTCTCACTCTGCAGCTGGGCCAGCCTCTCCTCTATGGACTCCTGCTTCCCCATGAACTTGCTCACTTTGCCTTGTTCGTCCTGAAACATGTGCTCCACCTCCTTCATCTGGCACTGGGTCTGGCTCAGGTCTCTCTGCGCATGCTTTAACGCCAGCGTCTTCTCTCGAAGCTCATCTTTCGTGTGATGAAACTCAATTTCTAGGCTATTCAACTTCCTTTCAGTTTTAGAAAGCTGTTGGGAGAGAACCTCATTG--TTATCTCGGAGGTTAGACATATCGAAATTCATCTTGTCTTTCACACGAAACCACTCATCTCTCGCTCTCTGGAAAGCAATTTCTAGGTCTCTTTTTGCTGTCTGAATTTCAGCGTGATCATGCAGAGCAGAAGCCAGCCTAGATCGGAACGACTCAACGTCTGTTTCCAGTCTCTCCTTATTTTGTTTTTCGTTGTCCAGCTTAGAACTCAGCATTGTGTTCTCAGCTTTAAGACTATTAAGCTGTCCAGTATACTGGAATATGGTTTTTGTAAATGTTTCTTCATTCAGCTTGACCATCCTTTGAAGGTTGTCATTCTTCTCATTTG s rn3.chr4 155065848 817 + 187371129 -----ACA-CTTACTTCTCTTTCTGCTTTCTCATTCTCGTACTGACACATTCTTTCTTTCAGATGGCTGCACTCGATGATTAACTCCTGATTTCTGTCTTCCAGCCTTAGGCTGTGCTTCTGACTCTCGGCTTGGACTCTGTTGAGCATCTCCTGGAACTGGTCTTGGATGCTCACTATCGTCCTGTCTTTGCTCTCGGCCTTGTTGGCGGCATCGTCCAGCTGCTGCCGGAGCAGCGTGTTCTCACTCTGCAGCTGAGCCAGCCTCTCCTCTATGGACTCCTGCTTTCCCATGTATTTATTCACCTTCCCTTGCTCGTCCTGAAACATGTGCTCCACCTCCTTCATCTGGCTCTGCGTCTGGCTGAGGTCTCTCTGCACACACTTCAAAGCGAGCGTCTTCTCTCTGAGCTCACCCTGTGTGTGATGAAACTCGGTTTCGAGGCTATTCAACTTTCTTTCAGTTTTAGAAAGCTGTTGGGAGAGGACCTCGTTG--TTATCCCTGAGGTTAGACATATCAAAATTCATCTTGTCCTTCAAACGAAACCACTCATCTTTTGCTCTCTGGAAAGCAGTTTCTAGGTCTCTTTTTGCTGTCTGGATTTCAGCGTGCTCATGCAGTGCAGAAGCCAGTCTAGACCGGAATGACTCGACGTCAGTCTCCAGTCGCTCCTTGCTTTGTTTCTCGTTGTCCAGCCTGGAACTCAGCATCGCGTTCTCAGTTTTAAGATTGTTAAGCTGTCCACTGTACTGGAATATTGTTTTTGTAAACGTTTCTTCATTCAGCTTTATCATCCTTTGAAGGTTATCATTTTTCTCATTTG s canFam1.chrUn 75565310 817 - 91062872 -----ATA-CTTACTTCCCTTTCTTCTTTCTCCTTCTCATACTTATATATTCTTTCTTTTAAATGGTTACATTCAGTGATTAACTCCTTATTTCTTTCTTGCAGTATAACACTTTGTTTTTCACTTTCAGCTTGAAGATTTCTTACAATAACCTGAAACTGGTCTTGGATATCAATTACAGTCTTTTCTTTACAGTCAACTTTGCTGTAGGCATCATCTATTTGCTGTCGGAGCAACATATTTTCACTTTGTAGTTGAGATAATCTCTCTTCTAAGGATCCCTGCTTTCCAAAGTATTTATTCACTTTACTTTGCTCATTTTGATACTTCTGTTCAATTTCCTTCTTCTGACACTGGGTTTGTTTTAGGTTTCTTTGTACATGTTCTAAAGCCAAAGTCTTTTCTCTGAGAGCATCTCTTGTGTGATGCAGCTCAATTTCTAGGGTATTGAATTTACTTTCAGCTTTAGAAAGTTGCTGAGAAAGCACCTCATTG--TTATCTTTTAGGTTAGACACATCAAAGTTCATTTTGTCCTGTAAACGAAACCACTCATCTTTTGCTCTCTGGAAAGCAAGTTCTAGGTCTCTTTTTGATGCCTGACTTTGATCATGATCTTGTATAGCAGTAGCAAGTCTAGCTCGGTATGATTGAATTTTTGCTTCTAGTCTTTCTTTGTTTTGCTTTTCATTGTCCAGTTGAGAGTGTAGCATTGTATTCTCAGTTGTCAGAACATTGAGCTGTCCAGTATATTGGAATACTGTATTTGTTAATGTTACCTCATTCAGTTTTATGGTCTTTTGAAGACTGTCATTCTTTTCTTTTT s galGal2.chr1 166941646 823 - 188239860 ACTGTACAGCTTACCTCTCTTTCCACCTTGTCAGTTTCATATTTAAAGACTTGTTCCCTTAAATCAGTACACTTGGTATTTAATTCCTTGTTTCTCTCTTCCATGAGGTAAACTTGCTTTTCAGTATCAGCTCTGAGTTTGTTGAAAATATCATTAAATTTGTCCTGGACATCATTCACAACCTTTTCTTTGATGATTCCCTTGTTCTGCATATCTTCCAGCTGCTGACGGAGTAAAAGGTTTTCACTTTGGAGCTGGGCCAATCGTTCCTGCATAGATTCCTGCTTTATCATAAATTTGCTGACTTGATCTTTCTCAAGTTGCCGTGCATGATCACTTTCTTTTGCCTGACACTGGGCTTGATTTAAGTCTTTTTGTGTCATTTCTAAAAGCAGTGTTTTTTCTCGAAGTGTTTGTTTAAACTGGTGAAGCTCATTTTCTAGACTATTAGCTTTACTTTCCATTTTACTCAGCTGCTGAGACAAGCTCTTGTTGGTCT--CCCGCACATCAGAGAGCTCACAATGGAGCTTGTCTTGTAAACGAAGCCATTCATCACGTTCTCTCTGAAATGTTCGTTCGACATCACTTTTCAATGACTGATGACGTTCAAGATCTTGAACAGCCGCATTCAAGCGGGAACGGAATGATTCAATCTCTGTTTCCAGTCTGTCTTTGCTTTCTTTTGTCTGTTCAAGCTTGGAAGTTAGCATTGCAGATTCTGTCTTGAGTAAATTCAGCTGTCCATTGTACTGAAGTACTGTTTGTGTTAAGGCTTCCTCATTCAGTTTAAGTTCCTTCTGAAGGTCATCATTTTTTTCTTTCA a score=106404.0 s hg17.chr13_random 7078 167 + 186858 CAATTTCAAATTCTTTTAAGTA------TTTATTTTCCAGGTTTTGGTTTCTTATTGTGTCTTTTTCCAGCCTGAGCCAGGCAATTTCATCTTGCATCAAGCAGTTTTCATGCAGCAGG---TCTTCTTTTTCATCAGTTTCAGAAATCTAAAT-----AAAACAAAGAAAACTTGTAACT s panTro1.chr12 25313317 170 - 117159028 CAATTTCAAAGTCTTTTAAGTA------TTTCTTTTCCAGGTTTTGGTTTTTTATTGTGTCTATTTCCAGCCTGAGCCTGGCAATTTCATCTTGCATCAAGCGGTTTTCATGCAGCAAGTCTTCTTCTTTTTCATCAGTTTCAGAAATCTAAGT-----AAAACAAAGAAAACTTATAACT s mm5.chr6 118915223 174 + 149721531 CAATCTTAATATCCTCAAGATACCTCTTTTCCTTCTCCTGGTTATGGCTTTTTATTGTGTCCATTTCCAGTCGTAACACAGCAACTTCATCCTGCAGCCTCTGGTTTTTATGCAATAGATCTTTTTCTTTTTCATGACTAACAGAAACCTAAG-------AAAGGAAAGAGACATTTAGCC s rn3.chr4 155066665 174 + 187371129 CAATCTTAATATCCTCAAGATACTTCCTTTCCTTCTCCAGGTTATGGTTTTTTATTGTGTCCATTTCCAGTTTTAACATGGCAACTTCATCCTGCAGCCTCTGGTTTTTATGCAATAGATCTTTTTCTTTTTCATGACTAAGAGAAGCCTACG-------TAAGCAAAGAGACACTTAACT s canFam1.chrUn 75566127 174 - 91062872 CAATTTCAATGTCTTCACAATATTTCTTTTCCTTTTCCTGATTCTGGTTCCTTATTGTGTCTATTTCCAGTCTTAGCATGGCAATTTCATCCTGCAACATGCGGTTTTTATGTAACAGATCTTTTGCTTTTTCATGAGTAGGAGAAGCCTAAG-------TAAAATGAGAGTCTTTTAGTT s galGal2.chr1 166942469 181 - 188239860 AAGACTCATTTTCCTCTAAATATTTTCCTTCATTCTCCTGGTGCCTAAGTTTTACTTGATCAAGTTCTAGCCTTAGCATAGCAATCTCTTCTTGCAGTAACTGATTTCTGTGCAGCAGATCCTTTTCTCTGTCATTAGTGTCAGATTCCTGTGTGATAAAAGACAAAAATAAATTGTCATT a score=7334.0 s hg17.chr13_random 7245 43 + 186858 AGTATCCAATAGGATAACATATTGTGATTGTTTCTGAAATTAA s panTro1.chr12 25313487 43 - 117159028 AGTATCCAATAGGATAACATATTGTGATTGCTACTGAAATTAA s mm5.chr6 118915397 38 + 149721531 AGCAGTATATGAAATGTCAAAATCTCAT-----ATAGAATTCA s rn3.chr4 155066839 38 + 187371129 AGCAGTCTATGAAATGTCACAGTCTCGC-----ACAGAATCTA s canFam1.chrUn 75566301 41 - 91062872 GGAACTCAATAAAATGACAT--CATGATTTTCTCTGAAATTAA a score=33870.0 s hg17.chr13_random 7288 175 + 186858 ATAATAACCCGTACATTTAT---------ACAATGAGAGG-TTGCCATAACTGTATATCTAAATGGGAAA----AAA-----GTTGAGTCAAAACCTCAAACC-TCATA-TGGCATAAATTCCCCAAAGTTCAAAAGTTTATTTGAAGACAGTGAATCCATGAAAGCAAAAAAGAAA------CCACTAGATAATTTTTTT--A s panTro1.chr12 2954878 189 - 117159028 ATAATAACCTGTACATTTAT---------ACAATGAGAGGGTTGCCATAACTGGGTATCTAACTGGGAAA----AAAAAAAAGTTGAGTCAAAACCTCAAACC-TCATA-AAGCATAAATTTCCCAAAGTTTAAAAATGTATCTGAAGACAGTGAATCCATGAAAGCAAAAAAAAAAAAAAAACCATTAGATAATTTTTTTTTA s mm5.chr6 118915435 157 + 149721531 AGAACAGCATGTAGTTCTTC--GAACTCAGCACTGAGACA---------------CATATAACCACTAGA----AAA-----ATAAACT---AATTTCTGAGC-TTATAGTAGTAT-AATTCCTAAAAGTTCATAAATGTAATAGAGGACAATGACTTTATGAAATTAAGAGAGAAA-------TACTTCGTAA---------G s rn3.chr4 155066877 166 + 187371129 AGGACAGTGTGCAAAGTTCTTCAACCTAAGTGTTGAAACA---------------TATATAACAACTAGA----AAA-----ATAAACT---AATTTCTGAGC-TTATAAAAATAT-AATTCCTAAAAGTTCACACACATAATCGAAGACAATGACTTTATGAAATTGAGAGAGAAA-------TACTATTTAAGAAACTT--A s canFam1.chrUn 75566342 179 - 91062872 AAAATAATCTCTG--TTTAT---------ACAATGAATAGGTTGCAGTAAGTGGATATCCAACTAGAAAAACATAAA-----GTTGGATTCAAGCCTCAAACCTTTATACAAGCATAAATTCCCCAAAGTTCAAAAATGTAATTGAAGACAATGAATGCATGAAAGGAAAAAAGAAA------TCATGACAAAATTCTAag--- a score=17078.0 s hg17.chr13_random 7463 78 + 186858 AATTTCAGGATGAAAAAAGGCTTTTACTGAATTACAACAAATTGCAAG-------------------------GCATAAAGA-----ATTAATAACTATGACCACATT s panTro1.chr12 2955067 78 - 117159028 ACTCTCAGAATTAAGAAAGACTTCTACTGAATTACAACAAACCCCAAG-------------------------GCATAAAGA-----ATTAATAACTACAACTACATT s mm5.chr6 118915592 104 + 149721531 AAACTTAGCACTAGAAAAGCCGTTCTCTGAATTACAACAGGCTTCAGGTCCCATTAACCCCTACACACA---TGCACACATGTGCCCACAAACAAATATGAACACAC- s rn3.chr4 155067154 82 + 187371129 AAACTTAGCACTGGAAAAGCCTTTCTCTAAACTACAACGGGCTTCAGGCACC---------------------AAGTCCAAG-----ATTACCAAATCTGTTCACATT s canFam1.chrUn 75566521 94 - 91062872 aatctcagaattggaaaggtcttTCTCTGATTTACAACAAACCCAGAA---------GGCCTAAAAAAAAAAAAAAAAAAAG-----ACTAATACATCTGACTACACT a score=0.0 s hg17.chr13_random 7541 2 + 186858 AA a score=546.0 s hg17.chr13_random 7541 2 + 186858 AA s panTro1.chr12 2955145 2 - 117159028 AA s rn3.chr4 155067535 2 + 187371129 AA a score=5244.0 s hg17.chr13_random 7543 48 + 186858 AAAATTGGGTTTACACT-CTAACATCTAAACTATACCTCTCCCTGTAGT s panTro1.chr12 2955147 48 - 117159028 AAAATTAGGTTTACACT-CTAACATCTAACCTATACCTCTCCCTATAGT s mm5.chr6 118915696 35 + 149721531 --AATCAGGTTTACACTGATAACAATCAGTCTATAAT------------ s rn3.chr4 155067537 42 + 187371129 AAAATCAGGCTTATACT-TTAGTG--TAAATAATCAGTCTGCATT---- s canFam1.chrUn 75566615 41 - 91062872 AAAATTGAGTTTACACT-CTGATATCGAACACAGTCCACAGG------- a score=9436.0 s hg17.chr13_random 7591 56 + 186858 GAGAGCCTTAGCTTGGCAGACATTTG-----GACAGATGAATGACATTTTCCAAATTCTTT s panTro1.chr12_random 3630819 56 - 38776634 GAGAGCCTTAGCTTGGCAGATATTTG-----GACAGATGAATGACATTTTCCAAATTCTTT s mm5.chr6 118915731 48 + 149721531 AAGACCCTTAGTT---CTTTCATTTA-----CACAGAAGAA----ATTTCCCAAAGCTTT- s rn3.chr4 155067579 54 + 187371129 AAGACCCTTAGTT---CTGTCAATGACTAATGTCAGGAGGA----ATTTTCTGAAGCTCTT s canFam1.chrUn 75566656 43 - 91062872 AAAATACTTAGCTCTGCATATATTTG-----GACAGATTA-----ATTTCCTA-------- a score=53928.0 s hg17.chr13_random 7647 188 + 186858 AAGCTCCCTTTTTCT-AAAATATTGTCTAGATATTCTACTTTTCTAATATTTTT-ATGGTCAGTTTTAAGAATGATATTTATTGATAAATGATAAGTCTAGGCATTGTAC--TAA--------GCACTTTTACACACACAAATCAATGAACTCATTTAGTTATAA----TT-CTATAGCAAAAGGTTAAAAATA-TAAGGAAGCTG s panTro1.chr12 25314138 188 - 117159028 AAGTTCCCTTTTTCT-AAAATATTGTATAGATATTCTACTTTTCTAATATTGTT-ATGGTCAGTTTTAAGAATGACATTTATTGATAAATGATAAGTCTAGGCATTGTAC--TAA--------GCACTTTTACATGCACAAATCAATGAACTCATTTAATTATAA----TT-CTATAGCAAAAGGTTAAAAATA-TAAGCAAGCTG s mm5.chr6 118915779 169 + 149721531 TAGTTCTTTTTATCC-AGAAAG---------------ACTTTTCTAACACTATT----TTTAGTCACTAAAATCACATTTATTGATAAATGCTAAAAATAAGCACTAAAC---AA--------GAAAGTATGTCTGCACATGTGAGTGAATTATTGTCACTACCA----CTGCGAAAAGGAAAGATTCAAAATA-TAA-CAAGCTG s rn3.chr4 155067634 180 + 187371129 TAGTTCTTTTTATCC-AGAAGG---------------ACTATTCTAACACTATTTGTAGTCTGTCACTGAAACCCCATTTACTGATAAATGCTAAGAATAAGCACTAGAT--AAATCAGGATGTCACTTGTCACTGCACATGTGAGTGAACTCTTGTCACCACCA----CC-ATGGAAAGAGAGATT-AAACTG-TAA-CAAGCTA s canFam1.chrUn 75566699 192 - 91062872 AAATTATTTTTTCCTGAGAATATTCCATAGATGTTCTACTTTTGTAACATTTCT-ATAGTCAGTTATAAGAATTATATCTACTGATAAATGACAAATCTAGGCATCATACTATAA--------ACACTT----CTGCATACATTAATGATCTCTTTTAGTTATCATAATTC-CAGAATGGGGAGGTTAAAAATACTAAGTGAGCTG a score=14695.0 s hg17.chr13_random 7835 88 + 186858 CAGGATTTTTCCCAGCTTTTCTGACTCTACTCCTAGTGCTCTTCCACCAAA--TCAATAACTTCTGTGAGGTAGATACATACATACAAAA s panTro1.chr12 25314326 88 - 117159028 CAGGATTTTTGCCAGCTTTTCTGACTCTACTCCTAGTGCTCTTCCACCAAA--TCAGTAACTTCTGTGAGGTAGATATATACATACAAAA s rn3.chr4 155067814 84 + 187371129 CAGAA--GTCCCCAG-TCCCCTTACCGTGCGGCTGGCACTCCCTCCCGAAG--GCACTTACTCCC-TTATGTTACTTCAGACATAGGAAA s canFam1.chrUn 75566891 88 - 91062872 CAGGACTTTCCCCAGGTCTTTGTACTCCATTACTAGTG-TTTTGCACCAAACTGCAGCTACTTCTCTAATGTAAA-ACATAAATACAAAA a score=2861.0 s hg17.chr13_random 7923 16 + 186858 ATAATCTTCTATTTCA s panTro1.chr12 25314414 16 - 117159028 ATAATCTTCTATTTCA s canFam1.chrUn 75566979 16 - 91062872 GAAGCCTTATATTTCA a score=36680.0 s hg17.chr13_random 7939 235 + 186858 --------------AGACACCAAAAGTCAAGAAAATTAAATTTATAAAGCTCTTTTTAGAAAATCTTGAGATTATTTACTATTGGGATAACTTTTATTTCTTTTCCATAACATTTGAAACGTAATTAACATGAAATAGGGGAAAATATGCTGAACTATGTCACTAGGAACAAAATACT------TACAATATCATTAAGTATATATTATAGAATAACATTGTTTTCATAAGGCCTTTGAACtaaaataaaatatt s panTro1.chr12 25314430 235 - 117159028 --------------AGACACCAAAAGTCAAGAAAATTAAATTTATAAAGCTCTTCTTAGAAAATCATGAGATTATTTGCTATTGTGATAACTTTTATTTCTTTTCCATAACATTTGAAATGTAATTAACATGAAATAGGGGAAAATATGCTGAACTATGTCACTAGGAACAAAATACT------TACAATATCATTAAGTATATATTATAGAATAGCATTGTTTTCAAAAGGCCTTTGAACttaaataaaatatt s canFam1.chrUn 75567190 251 - 91062872 aGCCTTATATTTCAAAATACCAATGCCAAACAAGGTAAAATTTATACAGCTC---CTAAAATATCACGAGATTATCTGTGGCTGCAATAAATTTTATTTCCTCTTCAGATGTTTACACTGGCAATAAATGCAAAATAGGGGAAAATACACTGAGCTATTTTATTAAGAACAAAATACTAATCAGTAAATTTTCATTAAGTATATATTACAGCATTTGATTG-TTTCAAAAGCTCCTTGTAATGAAATTGGATACT a score=3167.0 s hg17.chr13_random 8174 50 + 186858 tcaagatttattataaataattGTAGCTATAAATGCGATGAtttattttt s panTro1.chr12 25314665 47 - 117159028 tcaatatttattataaataattGTAGCTATAA---TCATGATTCATTTTT a score=17606.0 s hg17.chr13_random 8279 206 + 186858 TCAGGGGACAGCATAATTTTGCTTTAATTCTACAGCACGTTTTCACCAAGGGTGGAAGGAGAATGAGTTGAAGTATAGATTTTACAGACGTCACATCGTATTGCTAAAAACAGACGGAAAAGTTATTGTAATAACCAGTAAAA-TTGTGGAACGAGAACCAATGAGATCACTGATGTAGCAATTATTTTCCTCAAGCAAGAGGGATT s panTro1.chr12 18149259 207 - 117159028 TCAGGGGACAGCATAATTTTGCTTTAATTCTACAGCATGTTTTCACCAAGGGTGGAAGGAGAATGAGTTGAAGTATAGATTTTACAGACGTCACATCGTATTGCTAAAAACAGATGGAAAAGTGATTGTAATAACCAGTAAAAATTGTAGAACGAGAACTAACGAGACCACTGATGTAGCAATGATTTTCCTCAAGGAAGAGGGATT a score=7481.0 s hg17.chr13_random 8485 41 + 186858 TTGAGGCAGGAAGGAGGGAAAAGAAGAAGTTATTTATGTAA s panTro1.chr12 18149466 41 - 117159028 GTGAGGCAGGAAAGAGGGAAAAGAAGAAGTTATTTATGTAA s mm5.chr6 92316089 41 - 149721531 TTAAGGCAGGAGAGACAAAAAAGAAGAAAATATATTGGTAA a score=16725.0 s hg17.chr13_random 8526 196 + 186858 TTTTGGGGTTTCTGCTGAGGAAACCTGAGTCAACTCACTTCAGATGCATTTAGCATGTTTACACAAAAAGGATTTGATTTTGGCAGCTCCAGGAACTACTGGATGAAGCAAAGAAAGCTAGAATTGGGATAAACCACATTGACTAATTACTTCTCTTTGTTACTATTAGGCATAAGAC--ATATCTTTTGTTGATTTT s panTro1.chr12 18149507 198 - 117159028 TTATGGGGTTTCTGCTGAGGAAACCTGAGTGAACTCACTTCGGATGCATTTAGCATATTTACACAAAAAAGATTTGATTTTGGCAGCTCCAGGAACTACTGGATGAAGCAAAGAAAGCTAGAATTGGGATAAACCACATTGACTAATTACTTATCTTTGCTACTATTAGGCATAAGACATATATTTTTTGTTGATTTT a score=9090.0 s hg17.chr13_random 8722 60 + 186858 TGTTATAAAAACTAGATAAACTTGAATATCAATACATTGGCTTCATTCATCCAAGTGCTA s panTro1.chr12 18149705 60 - 117159028 TGTTATAAAAATTAGATAAACTTGAATATCAATACATTGGCTTCTTTCATCAAAGAGCTA s rn3.chr1 212771803 60 - 268121971 TGTTACATAATTGAGGTATACTTCAAAATCATTATTTCTGCCTCTGACATCCAAATGCTA a score=2640.0 s hg17.chr13_random 8782 31 + 186858 TCTCATGGATGAAATAGCTATTTAATGAATA s panTro1.chr12 18149765 31 - 117159028 TCTCACGGATAAAATAGCTATTTAATGAATA a score=29647.0 s hg17.chr13_random 8813 326 + 186858 TGCAAATAGAAGAAAGCTTTAggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactgaaaaatacaaaaaaaaattagccaggcgtggtggcctgtagtcccagccacttgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtgagctgagatcgcaccactgcactccagcctgggcaacagagtgagactccgtctccaaaaaaaaaaaaa--gaaggaaagaaa s panTro1.chr22 10136129 328 + 47338174 TGCAAATAGAAGAAAGCTTTAggccgggcgcggtggctcatgcctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaaatacaaaaaaaaattagccgggcgtggtggcctgtagtcccagccacttgggaggctgaggcaggagaatggcgtgaacccgggaggtggagcctgcagtgagctgagatcgcaccactgcactccagcctgggcaacagagcgagactccgtctccaaaaaaaaaaaaaaagaaagaaagaaa a score=600.0 s hg17.chr13_random 9139 1 + 186858 G s panTro1.chr22 10136457 1 + 47338174 G s mm5.chr6 92599378 1 - 149721531 G s rn3.chr4 100063902 1 - 187371129 G a score=204248.0 s hg17.chr13_random 9140 1106 + 186858 CTTTACATCTAAAGTTATTCTGAAAATTCAGTGGCTCAAACATGTCTGGAGACAAAAACTCCATTGCAGTGAAGAGCATTACT--------AGGTGGACAAAGGTCAAATGACAGGTGACCAGATCATGGGTCTTAGGCCTGTGATCCTGAAAGAATGTAAAAATGTGGAAGAGAAGATGGAAGATGTTGGCTGAGATTCTAATGCTAGCTTGAC-GACTAAAGGCATTTTTAA---AAGATAACATAAGTGAAAACTGTGTTCATCCTAATGGCATAGAAGAAACATATTTTGTAGATCTGAAAAAAA--AT-GACTTCATATCATCAATGTTCTTTCTTCAGT-GTTTGAAATTATTACCATCATTATTATTTTTATTTTACTCACTTATTCTTGATTAACCTTGACG-------CTAAATTATTGATAATGTACC------------CCCTGCACTCTTTTCTAAG---CCaaataatt--------------ttatatatatata-attattactttctatatataatG----AATACATTTACAATCATGCCTGTATAGGGTGCACACTATCTATATTCCTAATGCCCTTTGCCCTCCATCTTTAGAAATCAATTTTTGTTATTTTTTGTTCTCTCATTTTATTTTTAGCACCCAATTCAGT---GACAGGCATATAAAATG-AATCA----CATTTGCACAGTTGAATTGAATAAAATATATGCTAAAGTGGAAAGACTCACTAAAG------CAAACAATT--------AAAAATAT---ATCCAATTGAGTCTTTCTCATGATCTATCACTTTGATA---------TGGTTTATTCTTCACTCTTCCATGGTTTTTGATGcttatgattctactgggcccaccatgataattcataatagtcttcttatttttcatcagcatatcggcaattttgatcccatttgcaaccttatattctctttgccataaattgtaa------------------tgtatttccagtatctaagaacttggatgtaaatatcttttttagggagtggg-gaacattattctgtttatcCAAACCCA-----AATTAACTGTATGTCT--------TAGAAATGGTCCTGGTGCTTTCCCAGTTTAGTTCACATCCCAGAGA-CTTATCATGTGAACTC----------------------TCTTCATCTCAGAGCAAAAT----TTTTAATATTTGCCTCTC--------------------AGTTATCAACAAGATA s panTro1.chr22 10136458 1128 + 47338174 CTTTACGTCTAAAGTTATTCTGAAAATTCAGTGACTCAAACATGTCTGGAGACAAAAACTCCATTGCAGTGAAGAGCATTACTTTGTCCACAGGTG-ACAAAGGCCAAATGACAGGTGACCAGGTCATGGGTCTTAGGCCTGTGATCCTGAAAGAATGTAAAATTGTGGAAGAGAAGATGGAAGATGTTGGCTGAGATTCTAATGCTAGCTTGACAGACTAAAGGCATTTTTAA---AAGATAACATAAGTGAAAACTGTGTTCATCCTAATGGCATAGAAGAAACATATTTTGTAGATCTGAAAAAAA--AT-GACTTCATATCATCAATGTTCTTTCTTCAGT-GTTTGAAATTATTACCATCATTATTATTTTTATTTTACTCACTTATTCTTGATTAACCTTGATG-------CTAAATTCTTGATAATGTACC------------CCCTGCACTCTTTTCTAAG---CCAAATAATtatatatatatataattatatatatata-ATTATTACTCTCTCTATATAATG----AATACATTTACAATCATGCCTGTATAGGGTGCACACTATCTATATTCCTAATGCCCTTTGCCCTCCATCTTTAGAAATCAATTTTTGTTATTTTGTGTTCTCTCATTTTATTTTTAGCACCCAATTCAGT---AACAGGCATATAAAATG-AATCA----CATTTGCACAGTTGAATTGAATAAAATATATGCTAAAGTGGAAAGACTCACTAAAG------CAAACAATT--------AAAAATAT---ATCCAATTGAGTCTTTCTCACGATCAATCACTTTGATA---------TGGTTTATTCTTCACTCTTCCATGGTTTTTGATGcttatgattctactgggcccaccatgataattcataatagtcttcttatttttcatcagcatatcagcaattttgatcccatttgcaaccttatattctctttgccatgaattgtaa------------------tgtatttccagtatctaagaacttggatgtaaatatcttttttagggagtggg-gaacattattcTCTTTATCCAAACCCA-----AATTAACTGTATGTCT--------TAGAAATGGTCCTGGTGCTTTCCCAGTTTAGTTCACATCCCAGAGA-CTTATCATGTGAACTC----------------------TCTTCATCTCAGAACAAAAT----TTTTAATATTTGCCTCTC--------------------AGTTATCAACAAGATA s mm5.chr6 92599379 1058 - 149721531 TTTTGCATTTGAAGTCATTCTCAATATTCATTGACTCAAATATATCTGTATGCAAAATATCTCCTGCAGTGAAGAACAGCATT--------ATGTGAATGAAAGTCTGTTGACAGGAGATTAGGTCCATGGGCTTAGGTCTGTGCCCT---AGGATTATGAAAATATAGAAAACAAGAAGACACATATTAGCTAGGACTCCTAACCCAGCTTGGA-TATAAAGAGCATTCTCCA---ATGAGAACATAAGTGAGAGGTGAATTTATCTTAAGAGCATTGTTGAGTCATATTTCTTACATCTGAAAGAAA-----GAGTACACATCAGTCTTGTGATTCACTGAACAGTATGCATATACCACACTC-----------TATTTCCCCTAGGAATTCTTAATTAACCTATATC-------TTTAACTTTTGATGTTCCAGA------------CTGTTCATCATAGCCTATATTTCTAGATGCCC---TCTATGTATC-TTCTGTATCTATAGACTATTA-------GATATTGTA----AATACATTCATGGTCATACCCATACAGAAAGCACACTTTCTGTGCCTGGATTGCACCTGAGTCTAATGTCTTAGAAATACAATCCTAGTGATTTAAATTCCCTCATTTTAT----------------AAT---GATGAGCACAGAATATT-AACCA----TATATGTCCAACTGAAC--AAAAGTATGTCAGTCTGAGGGAAAAAAATCACAAAAG---------ATATCC--------AAAAGTA-------CAGGTGAGTCAGTCTTATATTCTATCATTTTACTA---------TACCCTCTTTTGCAACTATCCATGTTTTTTAA---CCATAATTCTAATGGAATCTCAATGATAATTCATGATTATACCACTA-TTATAATTAGAAAAG-AACAATCTAAGTTCATTTTTT--CCTTACATCCT------CATAAGTTAGAATTATGTTTTATCGTATCTTGCATCCTCAAAATCTAGAATGGAAGACATAAAT-----------GCAGTGGGAGATCATTAGTGGACTT-TCCACATCC------TATTAATTGGATAACCATTATTGGTATAAATGGCTAGATGGCTT--CCAGGTCATTTTCCACCTCATTTA-AGCCATTTGTGAACTC--------------------------CAATTCAGAA-----------TTAAAAAGCTGACTCCC--------------------AGCTAT---CAAGACA s rn3.chr4 100063903 1117 - 187371129 CCTTACATATGAAGTCATTCTCAATGTTCAGTGACTCAGATAATTCTGTAAGCCAAATCTCCCCTGCAGTGAGGAACATCATG--------ATGTGAATGAAAGTTAATTGTCATGAGATCAGGTCCATGGGCTTAGGTCTGTGACCT---GGAATTGTGAAGATATAGAAAGTCAGTAGAAGAATATTGGCTAGGACTCCAAGTCTAGTTTGGA-AATAAAGGACATTCTTGA---ATGAAGACATAAATGGAAGGTGTATTCATAGCAAACACATAATAGGAGTCTATTTCATGTACCTGAAAGAAATAATAGATTATATATTAAACTTATGATTAGCTTCACAGTATGGCTATGTAATCATT----------CTATTTTCTCTACTAATTATTGAATATCCTATCTCTTTTTCTTTTGATGTTTCATGCTGTATATAGCCAACATTTCTATGTACCCT-----------CTGAGTATCT------------C-CTATATAGA-ATG-AATATTA-------TGGATAATG----AATCCATTCATAGTCAGTCATATACCAAAGACACAGTTTGTGTTCCTGTATTACACCTGAGTCTCATACCTTAGAAATCCAATTGTATTGAATTAAATTGGCTTA-TTTATACTTAACAACTAAAGCAGTAGAAATGAGCATAAAATATC-AATCA----TATTTGCACCAATGAAT---ATAAAGTGTG-GTGAGCTGGGGGAAAATCA-------------------TA--------AAAGATATCCAAATCAGATGAGAATGCATCATAGTGCATAATTTTACTG---------TGCTCTATTTTGCAATTATCCTTATTTTT----ACTCACAATTCTAATGGAGTCCAAGTCATGATTCATAATAATATGGCAG-TTTTAATCAGCAAAGGGTCTATGTCAATTCATCTTTT--TTTCATGTTTCTTTTTTCATGAAATCT--------------------TACATCCTCAGAATCTAGGATTAAAGACATAGAT-----------ATAGTGGAAGACCATTAGTGTACCT-TTCAAACCAAATTTTTATAAGCAGTATGGTT--------ATAAATTGGCCTAGATGGTTT-CCAGTTTAGTTCCCATCCAACTTA-AACCATTTGTGAACTCCAATTTACGGTTAAGGAACTAATTTCCAGGTATGAAGAAAATACAATTTT--CATTTATCTTTTTGGGGGAGGACAGGTGCGTAAATCATTAACAGGATA s canFam1.chr33 25930703 1011 - 34470944 CCTTACCTTTGAAGCCATTCTGAAAATTCAGTGACTCAAAAGTTCTTG---GTGAAGACCCCAGTATTGTGAAGAGGATCACT----------CTGGATGAGGGCCAAGTAGTAGGTGGTCAGGTCGGTGACCTTAGGCCTGAGATCCAGAAGGA----------GTGGAAGAGAGGTAGGGAAGTGTTGGCT--GAATCCAATACTAACTTGAA-GA-AAAAGGCATTTTTTGTTCATGGTAACATAAGTGGAAAGTGA--CAGTCTTAATGGAAAAGAGGAAAC--ATTCTGTATCTCAGGAAAAAC--AA-AAAACAAGATCAACACTGC----------------------CATTATCATT---------TTAATTCTACTTATTTATTCTCAATTAACTCTATCT-------CATATAAATTCTTAATGCAGA------------CTTGGCAT-------------------GAGTT--------------TCATCTCCATATA-ATTCATA-------TATTTCAAACACCAACACACACATAATCATGCCTCTGTGGGGTGCACGTTATCTATACTCCTAGAGCCCCCGG--CTCACTCTTTAGGAAGCATGTCTTTACTTTCTGAATTCTTTCATTTTGTACTCACGATCCAGTATAGG---GTTGCACATGTAAAAGGTAATCATGGGTATTTGTACAAATTAACTCAATACATTTTATGCTAATGGGAAAAGAATCAACACGTATCCCCCCAACATTTTTGAGGGGAAAATAAT---ATTCCGTTGAATCTATCCCACATCACATCACTATAAcacttctttttttttttctttgtccatcctccacatgtaagcacccttgtaattacttagggctcatcccaataatgcaagataatcttcata-tcaaggttagctgattattgaccttgattccctcctc-tccttaactcccttttattata--------------------------ttaccatcaagggtctttgttttaggatgtggatatctttT---------------------------------------------TACTAATTGTATCTCC--------TAAAAATGATCCTGGCTCTCTCCTGGTTTAGTTTCTATACCAGAGATCCCTTTATGTAAACTC----------------------TCTTCATTTCAGGAGGAGAT----TGCAAATG-----CCCTC--------------------AATTTTCAAGAGGACA a score=2238.0 s hg17.chr13_random 10246 4 + 186858 AACA s panTro1.chr22 10137586 4 + 47338174 AACA s mm5.chr6 92600437 4 - 149721531 AACA s canFam1.chr33 25931714 4 - 34470944 AACA a score=2415.0 s hg17.chr13_random 10250 16 + 186858 CTACTTTTAATCATTT s panTro1.chr22 10137590 16 + 47338174 CTACTTTTAATCATTT s mm5.chr6 92600441 16 - 149721531 CTATTTTCCTTTATAT a score=91.0 s hg17.chr13_random 10265 1 + 186858 T s rn3.chr4 100065415 1 - 187371129 T a score=-826.0 s hg17.chr13_random 10266 22 + 186858 TATTTCAACCAAGAGGTTGCAT s panTro1.chr6 64573708 21 + 161576975 TGTTTCA-CCATGAAGTTGCAT s mm5.chr6 92600457 22 - 149721531 TTTGTGGGAGAGGAAAATAAAT s rn3.chr4 100065416 21 - 187371129 TATCACAAACATGAATGTGCT- a score=-2237.0 s hg17.chr13_random 10288 48 + 186858 TAAAATAGTCAC---------ACCTGGTTCTTTTTCCTGA------------------------GACTTTACTTGATACAG s panTro1.chr6 64573729 48 + 161576975 CAAAATAGTCAC---------ATGTTGGTCTTCTTCCTGA------------------------GACTTCACTTAATACAG s mm5.chr6 92600868 76 - 149721531 TAAGACAAAAACTATTTCAATACATTTTTCTTAAACATGAACTCATAAAATATGATCAAACAATGACTCTGTTTGG----- s rn3.chr4 100065437 44 - 187371129 TAAGATAACCAT---------ATAGGAATGCTGTTTG-GA------------------------ATTTCTGTTTAAAA--- a score=639.0 s hg17.chr13_random 10336 7 + 186858 GAATGTC s mm5.chr6 92600944 7 - 149721531 GGATTTC s rn3.chr4 100065481 7 - 187371129 GAGATTC a score=21916.0 s hg17.chr13_random 10343 195 + 186858 AGTCTCCAATG-----AGAAATATAATGCCTCTCAAGTTTTCTTGGGATATCCTCAATACCATAATACCTTGTAAAATTTTGCAGAACAATTTTGCAGTTG----CCATTTCATGTTATTTGGCAAGGATTCAGGTATCATTGTATCATT---TTGCTTTAATCCATGGG--TAAAAACAATTTAGCTTCATG-CATGAAATATAAAAAA s panTro1.chr6 64573909 189 + 161576975 AGTCTTCAATA-----AGAAAGATAATTTCTCTCAAGTTTTCTTGGGATAACTTCAATATTATAACACCTTGTAAAATTTTGCAGAACAATTTTGCAGTTA----CAATTTCATGTTATTTGGCCAAGATTCTGATGTCATT-TATCATT---TTACTTTAATCTAGGAC--TAAGAACAATTTAGCTTCATGACAT------TAAAAAA s mm5.chr6 92600958 201 - 149721531 AGATTCCTATACATGCAGGGGAAAACCAGGTCCCCAGTGTTATT-GTATGTCATCAGGATCCTCACACTCTTTACAGTTTTACTCAACAATTTTACCTTTGTTACCTATGTTA-GTTATTTGGCATGGTTACTAGGATCAATTTATTATGCAATTAACTTCATTCAGTACTTTAAAATCAACTT------GTGATAG-AGAGATAAAAGA s rn3.chr4 100065488 190 - 187371129 --CTTCTCATG-----CACTGGAAAACACATTCCCAATTTTATC-ATACATCACCACCACCCAGACACTGTTTACAATACTACTCAACAACCT-----TTGTTGCTTATGTAA-GTTACTTGGCCTGGTTACGAGTATCAATTTATTATTGAATTGATTTAATTCAGTCCTTTAAAGTCAGCTT-----TGTGATAA-AGAAGTAGAAAA a score=-682.0 s hg17.chr13_random 10538 27 + 186858 CAG-TAAATTAGCACAGA-TTTGGGGGGG s mm5.chr6 92601159 27 - 149721531 CAACTTCACCAACACAGT-CTTGCAAGA- s rn3.chr4 100065678 28 - 187371129 TGTCTACACCAATTCAAAGCTTGTGGGA- a score=0.0 s hg17.chr13_random 10565 3 + 186858 GAT a score=0.0 s hg17.chr13_random 10565 3 + 186858 GAT a score=182.0 s hg17.chr13_random 10566 2 + 186858 AT s panTro1.chr6 64574134 2 + 161576975 AT a score=8831.0 s hg17.chr13_random 10568 195 + 186858 GAAGGTGTGTCTGGTTATATATTCAAAGTCATTTATCATTACACTGTCCCCTAAATAAAAATATGAAAGGCAATGCAAACATCTTGACACTTAGTATTCTTGTCT-------AATAAA-CACA----AGTGACTGAGGTAAAAAATATTGCTCTAAAACCACCAGGTATGTTTGATTTTATAAAGGAAATATGATCTAGGTTATTAC s panTro1.chr6 64574136 185 + 161576975 GAAAGTGTGTCTG-------ATTCAAGGTCACTTATCATTATACAATTCCATAAATAAAAATATATGAGACGATGCAAAAATGTTGACACTGAGTATCCTTGGAC-------AATAAT-CAAAAATTAGTGACTGAG----AAAAAGTTGCTCTAAAACCACCAGATATGTTTGATTTTATAAAGGAAAC---ATCTAGTTGATTAA s mm5.chr6 92601186 158 - 149721531 GAAGGAGTGTCTAAATATA-TTTCAAGTTCACATCACATTCTAC--------ATATATAGATGTGT---------------------------GCATGCTTGTATGTATAGAAATAATGCAGAAGTTAGTGGAACAG----AATATGT-----TATAACATCCCGGTGAATATGACACCATAAATCACACCT-TTTAAATTTAC--- s rn3.chr4 100065706 160 - 187371129 AAAGGAGTGCCCAATTCTATTTTCAAGTTCACTCA-------AATATTCCATAGACATAGACACAT---------------------------GCATGCTTGTATGTATAACCACAATGCAGCAGTTCGTGG---------AAAGGACCATCCTATAATATCTCCATGAATATAACATGATGAATCACACAT-TTTACATTTAC--- a score=23468.0 s hg17.chr13_random 10763 122 + 186858 ATGG-TTATTACTCTCTCTACAAAACTT----TAGTAA-GTGAATCCATTTATCATAAATGTCAGAATCAAACAATGAAAAGTTCCCACCAACATGTGTCTGCACCATCAGCATGGTTGAGTTCTGCT s panTro1.chr23 15735654 122 + 50034486 ATGG-TTATTACTCTCTCTACAAAACTT-----AGTAAAGTGATTCCATTTATCATAAATGTCAGAATCAAACAATGAAAAGTTCCCACCAACATGCGTCTGCACCATCAGCATGGTTGAGTTCTGCT s mm5.chr6 92601344 118 - 149721531 ATGATTTTTTACTCT---TAAAAAAAGT-----AGTAA-AAGAAAGGATTCTTCCCAATTTCCAGAGCCAAAT-ATCTGATTCTTTCACCAACATACATTTACAGTACCCACACGGTGATGTTCTGTT s rn3.chr4 100065866 123 - 187371129 ATGATTTTTTGCTCC---TAAAAAGCTTAGTTTAATAA-ATTAATAGATTCATCCTAATTTTCAGAGCCAGATAAT-TAAGTTGCTCATTAACATATATTTACGGTACCTGTACAGTGACATTCTGTT a score=1463.0 s hg17.chr13_random 10885 14 + 186858 GTCAAGTTGAAATC s panTro1.chr23 15735776 14 + 50034486 GTCAAGTTGAAATC s mm5.chr6 92601462 10 - 149721531 TT----TTAAAATC a score=70146.0 s hg17.chr13_random 10899 780 + 186858 AGaaaaaaaaaaaaaaaaaaaaCATggggaggcaccaagatggccaaataggaacagctctggtctacagcttccagcactatcaacacagaagacagatgatttctgcatttccaactgaagtacctggaactggttggacagtggatgtagcccacggagagggtgagctgaagcagggtggggcatcacctcatccaggaagtacaaggggttgggggatttccctttcctagccaggggaagccatgacagatggtacctggaaaattgggacacttccaccctaatactgtgcttttccaacagtcttggcaaatggcacaccaggagattatatcccgcacctggctcggaggatcacacgcccatggagccttgctcactgctagctcagtggtctgagatcgaactgggaggcagcagacaggctgggggaggggcatccgccattgctgaggcttgactaggtaaacaaagccactgggaagcttgaactgggtggagcccaccacaactcaacgaggactacctgcctctgtagactccacctctaggggcagggcatagctgaacaaaaggcagcagaaaccttctacagcagaagtttctacagccttaaacttccctgtctgacagctctgaagagagcagtggttcccacagaatggagtttaagctctgagaatggacagactgcctcctcaagtgtgtccctgacccccaagtagcctaactgagagacacctcccagtaggggtcaactgacacctcatacag s panTro1.chr23 15735790 770 + 50034486 AG--------AAAAAAAAAAAACAAggggaggcaccaagatggccaaataggaacagctctggtctacagc-tccagcactatcaacacagaagacagatgatttctgcatttccaactgaagtacctggaactggttggacagtgggtgtagcccacggagagggtgagctgaagcagggtggggcatcacctcatccaggaagta-aaggggttgggggatttccctttcctagccaagggaagccatgagagatggtacctggaaaatcgggacacttccaccctaatactgtgcttttccaacagtcttagcaaatggcacaccaggagattatatcccgcacctggctcggaggatcacatgcccatggaggcttgctcactgctagctcagcggtctgagatcaaactgggaggcagcagacaggctgggggaggggcatccgccattgctgaggcttgactaggtaaacaaagccaccaggaagcttgaactgggtggagcccaccacaactcaacgaggactgcctgcctctgtagactccacctctaggggcagggcatagctgaacaaaaggcagcagaaactttctacagcagaagtttctacagccttaaacttccctgtctgacagctctgaagagagcagtggttcccacagaatggagtttaagctctgagaatggacagactgcctcctcaagtgtgtccctgacccccaagtagcctaactgagagacacctcccagtaggggtcaactgacacctcatacag a score=131273.0 s hg17.chr13_random 17093 1472 + 186858 ataatgataataataCATTTTTAAAAAGAGAATTtctttgttagttttcatcacaatgattgttctgtctaaagctgtcagtgggatgttcaaatcccccactattttttttttaattatactttaaattttagggtacatgtgcacaacgtgcaggttagttacatatgtatacacgtgccatgttggtgtgctgcacccagtaactcgcccccactattattgtgtggctgtctaagtctttttgcaggtttagaagtatttgttttatgaatcagagtgccctcatgttggatgcctatattttcaggatttttatgtcttcttgttgaactaaatgcttcatcattatgtaatgcctttttttt----------ttttactgttgttggtttaaagtctgttttatatgacatagcaatagcaacctctggtctctttgtttttcatttgtatgagagatctttctccaaccctttcctttcatcccatggatggcattacatattagataggtctcttgaagacagtatatggttgagtcttccaacttaccactctgtccctcttaagtagggtgtttggaccatttacattcaaggt-taatatcgatatgtgagatttgtatcttgtcattgttttgttagctggttgtttcgtagattcaactgtgtagttgctttacatggtctttgggctatgtatttaagtgtgttttatgttagcaggttttatttttcatttccctaaagaacctcttgtaaggctagtgtaatggtaacaaattctcttagcatttgcttgccaggaaaggattttatttcttctttgcttaagaagcttagtttggcaggatatgaaattattggttggaatttattttctttaaggatgctgaaaataggctcctaagattttaaggattgtaaggtttctgctgataggtctactgttagcctaatagagttcccttcgaaagtgacctgaccctttcctctaactcctgttaaggcttttattttcatgttgaccttggagaatctgataactgtgtcttggtgattgttgtcctgtatagtacttcacaaaagtactctaaatttcttgaattggcatgttggccactctaatgtgattgaggatatttttgtgtggattatattcccaacaacttttccaAttttttttttttt----agatggagtctcgctctgtcccccaggctggagttcaatggcacaaccttggctcactgcaacctccacctcccaggttcaagcaattatgctgcctcagcctcccaagtag-ttgggactacaggcatgcaccaccacacctggctaattacatatttttagtagagactgggtttctacatgttggtcaggctggtctcaaactcccaacctcaggtgatcagcctgcctcagcctcccaaagtgctggggttagaggcatgagccaccacgcccagccTGTTTTAA s panTro1.chr23 15741965 1486 + 50034486 ATAATAATAGTAATACATTTTTAAAAAGAGAATTtctttgttagttttcatcacaatgattgatctgtctaaagctgtcagtgggatgttcaaatcccccactatttttttttaaattatactttaaattttagggtacatgtgcacaacgtgcaggttagttacatatgtatacacgtgccatgttggtgtgctgcacccagtaactcgcccccactattattgtgtggctgtctaagtctttttgcaggtttagaagtatttgttttatgaatcagagtgccctaatgttggatgcctatattttcaggatttttaagtcttcttgttgaactaaatgtttcatcattatgtaatgctttttatttatttatttatttttactgttgttggtttaaagtctgttctatatgacatagcaatagcaacgtctggtctttttgtttttcatttgtatgagagatctttctccaaccctttcctttcatcccatggatggcattgcatattagataggtctcttgaagacagtatatggttgagtcttccaacttaccactctgtccctcttaagtggggtgtttggaccatttacattcaaggtctaatatcgatatgtgagatttgtatcttgtcattgttttgttagctggttgttttgtagattcaactgtgtagctgctttacattgtctttgggctatgtatttaagtgtgttttatattagcaggttttatttttcatttccctaaagaacctcttgtaaggctagtgtaatggtaacaaattctcttagcatttgcttgccgggaaaggattttatttcttctttgcttatgaagcttaatttggcaggatatgaaattattggttggaatttattttctttaaggatgctgaaaataggctcctaagattttaaggattgtaaggtttctgctgataggtctactgttagcctaatagagttcccttcgtaagtgacctgaccctttcctctaactcctgttaaggcttttattttcatgttgaccttggagaatctgataactgtgtcttggtgattgttgtcctgtatagtacttcacaaaggtactctaaatttcttgaattggcatgttggccactctaatgtgattgaggatatttttgtgtggattatattcccaacaa-ttttccaatttttttttttttttttagatggagtctctctctgtcccccaggctggagttcaatggcacaaccttggctcactgcaacctccatctcccaggttcaagcacttatgctgcctcagcctcccaagtaggttgggactacaggcatgcaccaccacacctggctaattacgtatttttagt-gagactgggtttctacatgttggtcaggctggtctcgaactcccaacctcaggtgatcagcctgcctcagcctcccaaagtgctgggattagaggcatgagccaccacgcccagcctgttttaa a score=11527.0 s hg17.chr13_random 18565 92 + 186858 CTCTTTGATTATCTGAATCTTCCAATTCCCCCCAACCACCAGTGAATTATTTCTGCTAATTTTTTTTTCTGTTTTT-GAAAAGAGAATGATGG s panTro1.chr23 15743451 93 + 50034486 ctctttGATTATCTGAATCTTCCAATTCCCCCCAGCCACCAGTGAATTATTTCTGCtaattttttttttttttttttGAAAAGAGAATGATGG s canFam1.chr20 14300328 75 - 61172541 CTTTTTGATTATCTGAATTTTCTAACTTTCCC-----------------GTTTTAGTGATTATATATTATATCCAT-TTAAAAAGAATAACAG a score=411.0 s hg17.chr13_random 18657 11 + 186858 AAACCA-ACCCT s panTro1.chr23 15743544 12 + 50034486 AAACCCCACCCT a score=95692.0 s hg17.chr13_random 18668 724 + 186858 GTTCCA-GTGGGAGAGTACAGGGATTCCCTGGAAAGACT-CTGGCTTGGAGCCCTCAGACCAGAGTTTAGGTCCAGGGGTCCACTTGGTGACTCAGGAGAAACCCTGGACCCCACCTCAAGGAATCTTGGATCCCCCAGTGGGGGT----------------------CTC---AGAAGCAGGAGGTTGCTGGGC-------CACGGCAGGGACAAGGCTTTCTCCAGCAC-CCCCATGCAAGGTTCCTCCATAGGAAGA----AATCATGTTGCCCGTTCCGCAGCAGGCATGCCATC--CCAGGC-----CCCTGAGAACCCCAGGGGACATC-----CCTGCTCTGCCAACCGTGTGAATACACTCCACCTCCCAGCCTCTGCCATGTCACAGATGACTTGAGGCTTCAGATGAG--TGACTC-CCCAGAGTCACATGGGCCTATGCTTGGGTCCCAGCCTCTTCTATGACCCTTGAGGTGGCTCTCAGCGTAGGAGGCTGATTTCTAGGCCTCTCTGTGCTGTTCTGTGAATGGGACAGGTAACAGACCTCTATGGCAGGCAATAAATGCCAAGTGCCCACCACAAGGCCTGGCAACAAACTCTCAGCAAATTCAGG----------TCATTCTCTGGGAGTGGCCACAGATGATTCTCAGAACCCCAACCTCTGGCACTGCTCCAGCCTATGCTGGACCCTTCATC-----ATCCAGGTGTCCCA-GGCCCACAAGTATCTGACACCTCAGGTGGCACTTGTGGCCCACTGTGTGACCCTAAGCATACC- s panTro1.chr23 15743556 724 + 50034486 GTTCCA-GTGGGAGAGTACAGGGATTCCCTGGAAAGACC-CTGGCTTGGAGCCCTCAAACCAGAGTTTAGGTCCAGGGGTCCACTTGGTGACTCAGGAGAAACCCTGGACCCCACCTCAAGGAATCTTGGATCCCCCGGTGGGGGT----------------------CTC---AGAAGCAGGAGGCTGCTGGGC-------CACGGCAGGGACAAGGCTTTCTCTGGCAC-CCCCATGCAAGGTTCCTCAATAGAAAGA----AATCATGTTGCCCATTCCGCAGCAGGCATGCCATC--CCAGGC-----CCCTGAGACCCCCAGGGGACATC-----CCCGCTCTGCCAACTGTGTGAACACACTCCACCTCCCAGCCTCTGCCATGTCACAGATGACTTGAGGCTTCAGATGAG--TGACTC-CCCAGAGTCACATGGGCCTATGCTTGGGTCCCAGCCTCTTCTATGACCCTTGAGGTGGCTCTCAGCATAGGAGGCTGATTTCTAGGCCTCTATGTGCTGTTCTGTGAATGGGACACGTAACAGACCTCTATGACAGGCATGAAATGCCAAGCGCCCACCACAAGGCCTGGCAACAAACTCTCAGGAAATTCAGG----------TCATTCTCTGGGAGTGGCCACAGATGCTTCTCAGAACCCCAACCCCTGGCACTGCTCCAGCCCATGCTGGACCCTTCATC-----ATCCAGATGTCCCA-GGCCCACAAGTATCTGACACCTCAGGTGGCACTTGTGGCCCACTGTGTGACCCCAAGCATACC- s canFam1.chr20 14300641 743 - 61172541 GTTACAGGTGGGAGTAGGTCAAGACACCCTGAAAAGACCTCAAGTTTAGAGCCCAC--ACTGGGGTTTTGG-CCTGAGGTCTGCTTG--------AAAGAAACCCTGAACCCTTCTCATGAGGACCTTGGATCTCCCTGGAAGGGTACTCAAGGGTGAGAATGGACAACTCGTGAAGGGCAGCATGTCCCTAAGTTATGCAGCATGTTGGGATCCAGGCTTTCCCCAGCTCTCCCCATGCAGAGCTCCTTGGAATGAAGGCTTCATTCATGTAGCCCATCGTGTAGCATTCATGCCACCATACAGACAGCCACTCCAAGACATCCAAGG--CATCCAAGACCCCCTCCACCAACTCTATGACCACACG--ATCTCCCAGCCCCTCCCATCTCATAGGTGAC-TGAGGTTTCAGGTGAGGCTGAggcttccagggtcaggcaggcctgaggtcaggtcccagac-agcctccaacccactgggcagtcctcagcaagggatgcctctcctcaggcctcagtgtgctgttctgtggaagggc--------------------tagggatgaaatgcagagcacctaacacaaggcttgGGAATGAACTCTTGAGAAGTATAGGAAAATGCGAATCCATCTCCAGGAGCAACCATACCTGCTTCCCAG-ACTCCAGCTCCAGA---------GGTTTGGGTGGGACTCTCCATCCCACTGTCCCAGAGTCTCAGGGCCCAGGCGTGTTAGACAACT---GTTGTATT--TGGCCTGCTGTGTGACCCTACGTGTGCTC a score=20477.0 s hg17.chr13_random 19392 72 + 186858 TCCATGT------TCTCTGGGCTGAGTCTCTGAGCCGCCACAGCTCTGCAGAGCCCAGGC---TGTGGGCTCCAGCCCCTG s panTro1.chr23 15744280 72 + 50034486 TCCATGT------TCTCTGGGCTGAGTCTCTGAGCCGCCACAGCTCTGCAGAGCCCAGGC---TGTGGGCTCCAGCCCCTG s rn3.chr1 48681925 78 - 268121971 TCCATGTCAGAGGTTTCTGAGGGCAGCCCTTGGGCTGTCAGAGCTCTGCAGAGCTTTGGC---TGCTGGCCCCAGGCCCTG s canFam1.chr20 14301384 75 - 61172541 TCCACTC------TCTCTGGTCTGGGTCTCCGAGCAGTCACAACGATGCAGAGCCAGGACCCACGGGAGCCCTAGCCCTGG a score=176968.0 s hg17.chr13_random 19464 1130 + 186858 ------ACCTCCAGCTTGACTTACTAAATGTAATCTCCAGGGCTAATTTTAGTCCTGGGCAGGAATTGGAC-ACATTCCCATGGCTAGGATG-------------------AGTCCCTGGAGGCTGGAG-GTGACACCATCCCACAGGACCCAGTGCCAAGATAATCCCCCAAATGACCCCTATGCATGTGGTCTCATGAGAGCCGGGACTGGGGCTGAGCTTGGGCCTGAGTCTCTTGGGCATAGAAGG-CTCAACTAAGCCCCTTCTCAATCTGTCTCAATTTTAGTTATAGGGACACTATGGCTAGTGCAGAGGTCACGTGACAGGGGAACCCCGAGAGGCAGGAAGTTGGGGGCCTTTCTGGACTGA--TGTCCTAGAGCTGAGACAggaagtgaattccatgcagaagaaacagcaggtacaaagatcccaagggggagagaaacagcagtgaggttggagt-gggtggggagggcaagaggccacagaggctgggccacactgggccttctgagc--tgcaggaggctctgggttttagtctaagagcaaagacgagctatgagagggttttgaggagagaagggatgggg-ctgatttatcattttaacacgcagctcatggctaccatggaaagcaggactatcagggctggggtggagatggcaggaggctggagatgaggtcagggctgtgtccatctgagCAGAGCCTGGGGCGGTACCCTCTCTGTGCTGGT-------CTGTACCTCACACTGTAAGTCACTGGATCCCACGGCTTATTTGGCCCTCCAGAACATCAGGAGGTCCCCCACCAACTCTGGTGCGAGG--TGACAGGTGCAGATGAGTTGATGC-GGGGCTTAACTCTCCTGACCCCCCATGACACTGGAACTCTCCTGATCCCATCACCAAAGAACC-AAGCTgtcccccactct-gcccctgagagatc-----------aagctctaatcatggcctcccttgctcacacattctccatggttccacattgaccttgtgagaaaatttctgcatccagcctgacattcaaacaccttgccctaatcaactcctgcctgcttctctctatctttgac-aaatatttctgtctagaaggtccttttttcccttcttcacctagccaaatcctattcacacttcagaactcagctca s panTro1.chr23 15744352 1132 + 50034486 ------ACTTCCAGCTTGACTTACTAAATGTAATCTCCAGGGCTAATTTTAATCCTGGGAAGGAATTGGAC-ACATTCCCATGGCTAGGATG-------------------GGTCCCTGGAGGCTGGAG-GTGACACCATCCCACAGGACCCAGTGCCAAGATAATCCCCCAAATGACCCCTATGCCTGTGGTCTCATGAGAGCAGGGACTGGGGCTGAGCTTGGGCCTGAGTCTCTTGAGCATAGAAGG-CTCAACTAAGCTCCTTCTCAATCTGTCTCAATTTTAGTTATAGGGACACTATGGCTAGTGCAGAGGTCACGAGACAGGGGAACCCCAAGAGGCAGGAAGTTGGGGGCCTTTCTGGACTGAATTGTCCTAGAGCTGAGACAggaagtgaattccatgcagaagaaacagcaggtacaaggatcccaagggggagagaaacagcagtgaggttggagt-gggtggggagggccagaggccacagaggctgggccacactgggccttctgagc--tgcaggaggctctgggttttagtctaagagcaaagacgagctatgagagggttttgaggagagaagggatgggg-ctgacttatcattttaacacgcagctcatggctaccatggaaagcaggactatcagggctggggtggagatggcaggaggCTGCAGATGAGGTCAGGGCTGTGTCCATCTGAGCAGAGCCTGGGGCGGTACCCTCTCTGTGCTGGT-------CTGTACCTCACACTGTAAGTCACTGGATCCCACGGCTTATTTGGCCCTCCAGAACATCAGGAGGTCCCCCACCAACTCTGGTGCGAGG--TGACAGGTGCAGATGAGTTGATGC-GGGGCTTAACTCTCCCAACCCCCCATGACACTGGAACTCTCCTGATCCCATCACCAAAGAACC-AAGCTGTCCCCCACTCT-GCCCCTGAGAGATC-----------AAGCTCTAATCATGGcctcccttgctcacacattctccatggttccacactggccttgtgagaaaatttctgcatccagcctgacgttcaaacaccttgccctaatcagctcctgcctacttctctccatctttgac-aaatatttctgtctagaaggtccttttttcccttcctcacctagccaactcctattcacacttcagaactcagctca s canFam1.chr20 14301459 1122 - 61172541 CCCCCCAGTTCCAGCTTGACTTGCTAAATTTAACTTCCCAGGCTAATTTTAATCCCTGGCCGGAATCGGGTGATGTTCCCACGGCTGGGACGTGTTGCCCCAGCCCTGACAAGTCCCTGGGGACAGAAGAGGGGCACTGGTCCGGAGGTCCTGGTGCCAAGGTGACTCCGGAAATG-CCCCCGTGCCTGGGGTCCCATGGGAAC----------GTGGGACTCAGACATGAATC---TGGGCCTGGAAGATCTGAATGTGGACACTACTCAATCTGTCCCCAGTTTAG--ACGAGCACATCCTGGCCAGGGCAGGGTTCACATAATGAGGGAGCCCCACAAACCAGAAGGCCCAGGG----GTGGGGGTGG--TCTCTTGGAGCCAAGACAggaagtgagttccaagtagaaggaggagcaggtaccaaggctctgaaggat-gagacacagtaatgaagctggagcaaggaagccaggagtagaagtcacaggggcaaggtcac-ttcggtcctctgagctgtgcggaggactgtgggttttggtgtaagagtgacagagagccatgagagggttttgagcat----gggatggggtttgatatatcatttataaATTTAGC-CACAGTTGCCACGGGGAGCAGCA----------------------GGCAGGAGACTTGAGGGGAGACCAGGGCTGTGTCCATCTGGGCAGAGACTAGGGGCGAGCCACCTCTCCTCCAGTTCTAGACCCACATCATACACTTTAAGTCAGTATACTCCAGGGGTCTTTGGTTCCTCCAAATC--CACCAGATCCTCTGCCATCTCTGGGGCCAGGCCTGACAGATGCAGATGGGCTCATGCTGGGGTTTGACTCTTCTGACTCTCAGTGACCTCGAAG--CCCCCAATCC--TCACCTGAGAACCAAAGCCATCTCCTATTCTGGCTCTTgagggatccacccagcacacagctctgatcacacctctgcctgctcacacactctccatggctcctctctgccctcaggagaaatttctagtttccaactgggcatttgaa-gccctgcCCCAATCAGCCCCTGCCCATCTTAATCTTCCCATAACAAAATGActctgcctggaaagcccttttt--------tcacttggccaactcctattcacacttcaaaacgcagctta a score=25169.0 s hg17.chr13_random 20594 282 + 186858 ggtcaGATAAggtggttcatgcctgtaattccagcactctgagaggccaagacaggaggattacttgaacccaggagtttgagaccagcctgaacaacatgatgtaaccccatctctacaaaaaatacaaaaattagctgtgtgtggtggcatgtgcctgtagtcccaccctgaagtaggaggatcaattgagcatggaaggtcaaggctgcagtgagcagtgattgtgccactgcatttcagactgagctacagagAAAAAAAAAAACTCAGCTCAAGAAC s panTro1.chr23 15745484 280 + 50034486 ggtcagatgaggtggttcatgcctgtaattccagcactctgagaggccaagacaggaggattacttgaacccaggaggttgagaccagcctgaacaacatgatgtaaccccatctctacaaaaaatagaaaaattagctgtgtgtggtggcatgtgcctgtagtcccaccctgaagtaggaggatcaattgagcacggaaggtcaaggctgcagtgagcagtgattgtgccactgcatttcagactgacctgcagag--AAAAAAAAACTCAGCTCAAGAAC a score=90707.0 s hg17.chr13_random 20876 500 + 186858 AAGCATTCCTCCAAGAAGCCCTCCCTGTTGTTCCTCTGGAATCCCACAGTCCCCATCCTTCCCCTGTAGTTCTGACCCCATGGGGCTGGCAGTAGATACATCCAACTTTGTCTCCCCTAGACTAGACAGCCCTCTAGATCAGGCCTAGGAGTGGACAGTAAAATTTAGAGAGTGCAACAGGTGAAGAGAGACGTGACTG-ACTCCCTCCTCTTTAGCTTCCCTTGACAGCTTCCTCTCAGACTGCCCCAGCTGATATCCTGCCCAGAAACACACATGCTTGCAAATCCAGCCACTAACCATTGACCTGTCTTGGACTCAAGTGTGAAGAGCCAGCCAAGGAATGCAGA-CCTGGAAGCCTAGGGTGTATGTGTGTGTATTTGTAGTCAAGTGAAAATCCCACCCAAGCTCCAGACAGACCCTGGCGGCCCATTCTGCAGATGTTGGTGAGGTTGGTATTTCT--GTGGAGGTGTCAGCAAAGGTTGAATGCGCCAGGCATGAGG s panTro1.chr23 15745764 500 + 50034486 AAGCATTCCTCCAAGAAGCCCTCCCTGTTGTTCCTCTGGAATCCCACAGTCCCCATCCTTCCCCTGTAGTTCTGACCCCATGGGGCTGGCAGTAGATACATCCAACTTTGTCTCCCCTAGACTAGACAGCCCTCTAGATCAGGCCTAGGAGTGGACAGTAAAATTTAGAGAGTGCAACAGGTGAAGAGAGACGTGACTG-ACTCCCTCCTCTTTAGCTTCCCTTGACAGCTTCCTCTCAGACTGCCCCAGCTGATATCCTGCCCAGAAACACACATGCTTGCAAATCCAGCCACTAACCATTGACCTGTCTTGGACTCAAGTGTGAAGAGCCAGCCAAGGAATGCAGA-CCTGGAAGCCTAGGGTGTGTGTGTGTGTATTTGTAGTCAAGTGAAAATCCCACCCAAGCTCCAGACAGACCCTGGCGGCCCATTCTGCAGATGTTGGTGAGGTTGGTATTTCT--GCGGAGGTGTCAGCAAAGGTTGAATGTGCCAGGCATGAGG s canFam1.chr20 14302774 471 - 61172541 aTTCATTCCTCCAGGAAGTCCTCCCTGCCCTCACTCTGGACTCCTACAGCTCCCGAAGTTCCTCTCCAGTTTTGACCCCA-AAAACTGG-GGTGGGTATATCCAGCTCTGTCCCCCTCAGACTGGAAGCCCCGCAGGACCAG--------------------ATTTAGTGAATGGATCAGGTCAAAAGAGACT---CTGAACTCCCCCC-----AGCTTCCCTCAACAACTTCCTCTCAGACTCCCCCAGCTGACTCCCTACCCAGAAATACATGGGCATGCAAATCCAGTCACTCAGCGTTGACCTGTCTCAAGCCCAGGTGTGAAGGGCCAGCCAAGGAATGCGGAGGCAGAAGGCCCAGAGTG--TGCATGTATATTTGTACTCACATGCAAATCCCCACTGAGCCGCAGACAGACCC-GGTGGCCTGTTCTCCAGATGTTGGCGTGATCGGAACTGCTGGGGGGAGGTAGCAGCACATGCTGAGTGTGCCAGGCACgggg a score=83000.0 s hg17.chr13_random 21376 595 + 186858 CAAAGGCC------------------------------------------AAGGTTTAGGGGGA-----------------------------------------------------------------------------------CTTCTACACACACA---CCTGCCCCCT------TGCCTTGTCCAGCCAGAAAGCAGAGAGC-AGTGGCATCTGCCCAGCACAGAGGCAGATGGGTGGATCCACTCACCCGAGGATAGAGCAGGGAAGACGGGACAGGAGAAATCCAAGAGGGCTTCTCAGGGGAGGAGGCGTGTAGTTTGG----CTTAGATACAGAGGCTAGACAGGGGCCTGAGCAGATGAGTAGGGGACTGGGCATTTGAAGCC----------------------------AAGAGTCTTGCACCTCCCTACCCCTTTCTTTGCACCCTCATACTCGAGCATTTATTAGCTACT-TGTGCTAACCACTGAGCTAAGCTGACCTCCAAGTAATTAGAAAGCTTAAGTAAACCAACATCTGTAGATGAGAAAGGTGACTGAGGACCTACTGTTACAAAGGCAAGGTaatttgaggctgtaatgagctatgagcaactgtgttccagcctgggagacagaatgT-AAAAAAATAGTAATAACAGAAAGTATACATCAATCTCAATTTTTTTT--AAAAAGGCAGATGGTTTTACAGTTGTTTTATCAAAACTCAAAGAACAGGAAAGC-CCACATTATT s panTro1.chr23 15746264 598 + 50034486 CAAAGGCC------------------------------------------AAGGTTTAGGGGGA-----------------------------------------------------------------------------------CTTCTACACACACA---CCTGCCCCCT------TGCCTTGTCCAGCCAGAAAGCAGAGAGC-AGTGGCATCTGCCCAGCACAGAGGCAGATGGGTGGATCCACTCACCCGAGGATAGAGCAGGGAAGACAGGACAGGAGAAATCCAAGAGGGCTTCTCAGGGGAGGAGGCGTGTAGTTTGG----CTTAGATGCAGAGGCTAGACAGGGGCCTGAGCAGATGAGTAGGGGACTGGGCATTTGAAGCC----------------------------AAGAGTCTTGCACCTCCCTACCCCTTTCTTTGCACCCTCATACTTGAGCATTTATTAGCAACT-TGTGCTAACCACTGAGCTAAGCTGACCTCCAAGTAATTAGAAAGCTTAAGTAAACCAACATCTGTAGATGAGAAAGGTGACTGAGGACCTACCGTTACAAAGGCAAGGTaatttgaggctgcaatgagctatgagcaactgtgttccagcctgggagacagaatgTAAAAAAAATAGTAATAACAGAAAGTATGCATCAATCTCAATTTTTTTTTAAAAAAGGCAGATGATTTTACAGTTGTTTTATCAAAACTCAAAGAACAGGAAAGC-CCAAATTATT s canFam1.chr20 14303412 652 - 61172541 AAAAGGCCTCTCCAAAGAAGAAAAAAGGGGGTGGAGGTTTCCTTAAGGAAAAAGTTGGGGGGGGCCCTAACAAAATAACCGGGGGGAGGGCTTTTAAAGTCAAAAGCCCCCCCCTAAAAAAAAAAAAAAAAAAGCCCGGANGCGCATCTTCTGTGCATACATTCCCCACCCCCCCATACACACGATATCCAGCCAGAAAGTAGAGAGCTTGTGGCATCTGCTCAGCAGAGAAGCAGAGAGATGGACCCACTGACCCAAGAATGGAACAGGGAAGAAGGGTCAGgagaaatccaagagggcatctcagaggatgaaacatgtggttggagtttccttgatggacaggttgggtgggggcctgagcaaatgagcagggagc-aggcatttgaagtcaagagtccagcacataaaaaAAAAAAAAAAGAGTCCAGCACTTCCTTACCCTTTTCTTCATACCCTCATGCTT-AGCATGTAGTATCAACCATGTGCCAACCACTGCAATAAGCTGACCACAAAAGAAGTAGAAAGTTTAAGTAGATCAAAGACCAGAGATTAGAAAAGTGACTCAAGACCCACCATTAAAAGGACA---------------------------------------------------------------------------------------------------------------GCAGGCCCAGATGGTTTTACAGC--TTTTATCAAACCTCAAAGGAGAGGGAAATGCAACATTATT a score=724.0 s hg17.chr13_random 21971 9 + 186858 TCAGCAAAG s panTro1.chr23 15746862 9 + 50034486 TCAACAAAG a score=13402.0 s hg17.chr13_random 21980 65 + 186858 TCAGACCTTTTAAACAGATGATAGCTGCCCAAGTCATTTTTATG-AAACTTCTTTATATCAAAACC s panTro1.chr23 15746871 65 + 50034486 TCAGACCTTTTAAACAGATGATAGCTGCCCAAGTCATTTTTATG-AAACTTCTTTATATCAAAACC s canFam1.chr20 14304267 66 - 61172541 TCAGATCTTTGCAAACAATGAAAATTGCCCAAGTCATTTTTATGAAAACTTCTATATGTCAGAACC a score=35887.0 s hg17.chr13_random 22045 219 + 186858 TAAGTCTAAAA--AGAAAAGTGTTGACCTTGATACGGGCTGTGTTAG-------------GCAGAGATTtcaatgaagtcctctctgaagaggtgacatttgatctgagacctgaagcaccagaaagaggcagccaagcca-ggaagaggcaggaatgggaaggtctagggaaagactggtcctggcaggcggaactgcagtggcaaaggcccagcggtgatcaggagcttggca s panTro1.chr23 15746936 221 + 50034486 TAAGTCTAAAAAGAGAAAAGTGTTGACCTTGATACAGGCTGTGTTAG-------------GCAGAGATTtcaaggaaatcctctctgaagaggtgacatttgatctgagacctgaagcaccagaaagaggcagccaagcca-ggaagaggcaggaatgggaaggtctagggaaagactggtcctggcaggcggaactgcggtggcaaaggcccagcggtaatcaggagcttggca s canFam1.chr20 14304483 234 - 61172541 TAAGTCCAAAAAGTGAGGTGTATTGACCACAAAAGGGGCCATGTGAACCCATGTGAATTCTCagggtttctagggaagacatctttgaagaggtgagattggagctgaaacctgaagcacgagaaagagacaaccaagcaagggaagggccagtcatgggagaatggcggggaagggtgttcctggcaggggcatctccaagggcaaaggtctgg-aACCGTCAAGAGTTTGATA a score=1737.0 s hg17.chr13_random 22264 11 + 186858 tttgcaaaaat s panTro1.chr23 15747157 11 + 50034486 tttggaaaaat s canFam1.chr20 14304915 11 - 61172541 tttaaaggaat a score=25856.0 s hg17.chr13_random 22275 182 + 186858 -----agtg-tgtgtgactggacagcgtga-------gcaagtgggcagaggaggagatcgtgatagggtg---tgcactggtcaggccacctaggtcctggagcccacagtgagaagcatgggcttgactctgagggcaaaggagagccacggagagtttgggtaagggggAAAATTGGCATTTAATTTTATAGCTT s panTro1.chr22 10149611 182 + 47338174 -----AGTG-TGTGTGACTGGACAGCATGA-------GCAAGTGGGCAGAGGAGGAGATCGTGATAAGGTG---TGCACTGGTCAAGCCACCTAAGTCCTGGAGCCCACAGTGAGAAGCATGGGCTTGACTCTGAGGGCAAAGGAGAGCCACGGAGAGTTTGGGTAAAGGGGAAAGTTGGCATTTAATTTTATAGCTT s canFam1.chr20 14304926 188 - 61172541 cacagactgctgtatggttggacagcatgacagtggggagatgggggagggatggaggatggtatagggaagattgtggggatctgatcacata--------aggccacagcaaagactgtgggctttgctctgaggtcaatgaggagccatggagagtttgggggcaggggca--tcgggacataattttacagttt a score=69106.0 s hg17.chr13_random 22457 743 + 186858 TTTGAAGtttgttttgttttcttagaaacaaggtctcagtctgttacccaaactggagtgcagCtcaaaatattttccaatttatcttgtgatttttttt-gatccaatgatttagaggtgggttgttaaattttcacatattttcagatgtccaatatttcttactgttgttagtttctaattctgtttcagtcagataacttatttgtTTTCCCTGTCTCTCCTGTCTTCTGATCCTGTTTTTCCATTGACTACCATTTTTAAAATCAACTTATTTCAGTGTGTCATTTACAATCCTATTTTAATTTTTTGCTCTTTCTCTGAAGTGGTTGTTCCAGGGATTATAATGTGCTTTTCCATTTTTCCAACGAATGAAGAACAAAGTGATCGACTTCTTGCCTCTGCCGGGGCTCTGAAGCGCTGCCCCGAGGCGGTGGATGGAGGGTGTCAGGCGTGACATCAAGAGCTCTGCAGCCAGGGCCTGGGACAACCTCCCGCTCCACCTCCCCGGAGCCTCGCAGCCAGCATCCCCAGCGGCCCGTGCGCCCCGGCCAGGCGGGACCTCAGCGCTGTGGCGGCCGCAGACCTCACCTGGGCAGGCCCCGGGCTGCATGCGGACCGCCGGGCGCCCAGGACCCTAGAGGCAACCAGCGGGCTGGATCCGCACAGCGGCCATGGGGAATGGATGGTGTACAGGGGACAAAGCTACACACGTCTTTCATTTTGGAGGGGGGAAAAAAGAA s panTro1.chr22 10149793 744 + 47338174 TTTGAAGtttgttttgttttcttagaaacaaggtctcagtctgttacccaaactggagtgcagCtcaaaatattttccaatttatcttgtgatttttttttgatccaatgatttagaggtgggttgttaaattttcacatattttcagatgtccaatatttcttactgttgttagtttctaattctgtttcagtcagataacttatttgtTTTCCCTGTCTCTCCTGTCTTCTGATCCTGTTTTTCCATTGACTACCATTTTTAAAATAAACTTATTTCAGTGTGTCATTTACAATCCTAATTTAATTTTTTGCTCTTTCTCTGAAGTGGTTGTTCCAGGGATTATAATGTGCTTTTCCATTTTTCCAACGAATGAAGAACGAAGTGATCGACTTCTTGCCTCTGCCGGGACTCTGAAGCGCTGCCCCGAGGCAGTGGATGGAGGGTGTCAGGCGTGACATCAAGAGCTCTGCAGCCAGGGCCTGGGACAACCTCCCGCTCCACCTCCCCGGAGCCTCGCAGCCAGCATCCCCAGCGGCCCGTGCGCCCCGGCCAGGCGAGACCTCAGCGCTGTGGCGGCCGCAGACCTCACCTGGGCATGCCCCGGGCTGCATGCGGACCGCCGGGCGCCCAGGACCCTAGAGGCAACCAGCGGGCTGGATCCGCACAGCGGCCCTGGGGAATGGATGGTGTACAGGGGACAAAGCTACACACGTCTTTCATTTTGGAGGGGGGAAAAAAGAA a score=7165.0 s hg17.chr13_random 23200 32 + 186858 AAAACGGAAATGAAAGATAGAAAATGTGTGGG s panTro1.chr22 10150537 32 + 47338174 AAAACGGAAATGAAAGATAGAAAATGTGTGGG s mm5.chr6 59497247 32 - 149721531 AAAGAGGAAATGAAGAAAAGAAAATATGTGGG a score=2110.0 s hg17.chr13_random 23232 22 + 186858 CTCTCCGTCCTTTCCTTTGCTC s panTro1.chr22 10150569 22 + 47338174 CTCTCCGTCCTTTCCTTTGCTC a score=20349.0 s hg17.chr13_random 23254 170 + 186858 CTGAGCGCTCTCTGGGGTGGGGGGCTCAGCGAGCTTCAAGAGGTGGCCGAGATTCCCCCACCTCGCCCCCAGATCCCCGGGAGAGGTCAGCACGGCCCCTCCCGTGGGTGTCACAGAGACCGATGCGGGTCCCGCTCCCCGGGAAGGAGTGGGTCTGGGTCCAGTCCACA s panTro1.chr22 10150591 170 + 47338174 CTGAGCGCTGTCTGGGGTGGGGGGCTCAGCGAGCTTCAAGAGGTGGCCGAGATTCCCCCACCTCGCCCCCAGATCCCTGGGAGAGGTCAGCACGGCCCCTCCCGTGGGTGTCACAGAGACCGATGCGGGTCCCGCTCCCCGGGAAGGAGTGGGTCTGGGTCCAGTCCGCA s canFam1.chr8 2114212 140 - 77374719 CTGGCCGCCCCCCGGGGTGAGGGGCTCGGCAGGACACCGAAGCAAGCGGGGATCCACTCCCCTGGCCCCGTGGCCTGGGCTGGAGGGCAGGGCTGCCCCTCC----------------------------TCGGCTTCTCTGG-CGAGGTGGCTGTGGCTTCGGTCCCG- a score=14050.0 s hg17.chr13_random 23424 82 + 186858 GGATCCCCT------CGCGGATGCTGACGCAGAATGGAGTTGAGGTGGGGGCAGCGCTGGACCCCAGGGTCCCTCCCTGCCTCCTGGG s panTro1.chr22 10150761 82 + 47338174 GGACCCCCT------CGCGGATGCTGACGCAGAATGGAGTTAAGGTGGGGGCAGCGCTGGACCCCAGGGCCCCTGCCTGCCTCCTGGG s rn3.chr4 131071205 82 - 187371129 GGGTTCCCC------TGGGAACTATGTCCCAGAGTGGGGCTCTGCCGAAGGCAGCTTTACACCCTGGGCTTCCTCCCTGCCTCCTGAG s canFam1.chr8 2114352 70 - 77374719 GCAGCCCCCGGTCCGTGAGGCAGCTGGTGCCGTGCGGGGTGGGGTGGGGGG-----------CCCGGGG-------CTGCCCCCAGGG a score=7318.0 s hg17.chr13_random 23506 52 + 186858 GAGCCCGGTGACCCAGGCAGCCCTGGTGAGGCCGCAGGAGTCTGGGCCCTAG s panTro1.chr22 10150843 52 + 47338174 GAGCCCGGTGACCCAGGCAGCCCTGGTGAGGCCGCAGGAGTCTGGGCCCTAG s canFam1.chr8 2114422 48 - 77374719 CAGCTCGGTG---CAGGGGGGCCAGGCCTGGGGGCGGGAG-CCGGGCTCCAG a score=46167.0 s hg17.chr13_random 23558 506 + 186858 CGACGCCCCCGGGCTCCCACAGGACGAATGTAGACGGTGAGGCCAAGGACGCCCTGCTGCCCTCGGGACTGTCCCTCCAGCCCCCAGCTTTCCGTGGCTATTGGGCCCCCTCTGCAGAGGGGCAGGGGAGCCCACCCTGGATCCTGAGGCGCCGAGCTTGAGGGACCCCAGAGCTCCAGCCAGGCCGCTTTCTTTGAGGATGGTGAAGCTGAGGTCCCGAGG-AGGGCAGGGGCAGGTCCCGGGCGCTCCTC-AGGCAAAGGGAGCCGATTTAGGGGCTGGGGTCACAGGAGGGGCTTCTGCGACCTCTAGGGCCCTAGAGCCCGGGAGGATGACAGACTGGGGGCCTTTCTTCCACCCCTGGGGCTGGGCAGACGCTCAGCCTGTGCAACCCGAAGCTGCTTCTGCCCAGTCCCAGCCGCGGCCCCTTTAAGAGGGGGTGGTGCTTCAGCCTGGCGCCAGGGACGCTGCCAGCATGCAGGCCCCGAGGGAAGCCGAGACTGCGCTTC s panTro1.chr22 10150895 508 + 47338174 CGACGCCCCCGGGCTCCCACAGGACGAATGTAGACGGTGAGGCCAAGGACGCCCTGCTGCCCTCGGGACTGTCCCTCCAGCCTCCAACTTTCCGTGGCTATTGGGCCCCCTCTGCAGAGGGGCAGGGGAGCCCACCCTGGATCCTGAGGCGCCGAGCTTGAGGGACCCCAGAGCTCCAGCCAGGCCGCTTTCTTTGAGGATGGTGAAGCTGAGGTCCCAAGGAAGGGCAGAGGCAGGTCCCGGGCGCTCCTCAAGGCAAAGGGAGCCGATTTAGGGGCTGAGGTCACAGGAGGGGCTTCTGCGACCTCTAGGGCCCTAGAGCCCGGGAGGATGAGAGACTGGGGGCCTTTCGTCCACCCCTGGGGCTGGGCAGACGCTCAGCCTGTGCAACCCGAAGCTGCTTCTGCCCAGTCCCAGCCGCGGCCCCTTTAAGAGGGGGTGGTGCTTCAGCCTGGCGCCAGGGACGCTGCCAGCACCCAGGTCCTGACGGACGCCGAGACTGCGCTTC a score=17569.0 s hg17.chr13_random 24064 113 + 186858 GTGCGAGGCCCGGGCAGCATCGGCGGCGTGGTCAGAGCGAGTCTCGGAGAAGATGTGGTGGCTTCCGTTTGTTGGTGGAGGAGGTGGCAGGCCTCGGCGGTAAGTGGAGGGGG s panTro1.chr22 10151403 113 + 47338174 CTGCGAGGCCCGGGCAGCATCGGCGGCGTGGTCAGAGCGAGTCTCGGAGAAGATGTGGTGGCTTCCGTTTGTTGGTGGAGGAGGTGGCAGGCCTCGGCGGTAAGTGGAGGGGG s mm5.chr15 87943984 106 + 104138553 GTGCAGCAGCCAGAGACCATTGGCAG-------GGAGAGAACCTCTTAGAAGAAGTAGTGGCTGTCGCCTGATGGCGGAGGATGAGGTAGGATTTGAGGAGCAGTGGAGAGGG a score=266957.0 s hg17.chr13_random 24177 3011 + 186858 ATGAACCCCACCTGGAACCCTCTGGGTCTCCCTACTCCTTCCCGGCCGCTCCCTGCTTTCGGGCCCTGACTTCTAAGTGGGCATCTGGGCCCGAGTCGTCAGCGTTGGGGCGGTTGTGGGATCCTGGCCTCTGCAGCGTCCACACCCCCGCCGGGAAGGCTATGCCCCGGTCCGACCCACGTCCAGCCTATAGGAGCGCCCTGGCCCAGAGCCGGCGGTGAAGCGCTGGACTGGGTCCCTCCGAGCCCCACGGGCCTCTGAGCTGGGGTCTAGGGTTATTTTTTATGCCTCAGGACCTTTAGAAAGAGACCTCGCTAGAGCAGGGGACATCTGtagtttcaattctttgaggagtttccagctatttaactgttttccatggtgtgtaccctaattttcatttccacctacagtgtatgagttcccgtttctccaaaaccaaacccccattccaatttttt---ttgtttttgttatttcgagacggagtctcgctctgtctccaaggctggagggcagtggcgccatctcggctcactgcaacctccacctcccggtttcaagcaattctcctgtctcagcctcctgtgtagctgggactacaggcgcccgccaccacgcccggctaatttttgtatttttatgtttagtagagacggggtttcacgatatttgtcaggctggtctgaaactcgtgacctcaggtgatccacccgccttggcttcccaaagtgctgggattacagacgtgagccacggctcccagaccctcctatttttaaaaaatttttctaggaatattcaataagtgtgagactatctgcgtgtggttttgaattacagtattctaatgaatagttaatttcgaggaccttatctcttatctgttgttcgattttatatctgtgcagaattgtctctttaggttatttgcgaaatattagattggattctttttctactttgtACT-CTTTTTTGTGTACACGTTAGTTGacaactcctcgtgaattacatgattgcctgaaatttttgcataatctatgggatgcttttttatttggaaagtagttttctttgccatgcagaaacttttcacgttgatgtagtcccatat-tttttttttttttgcgttttatgcgtgtcataATGGTCACCCATATTAGAAAATATGCATCAGTAACAAAGCATTTAATTGTCAGTGAGGTTTTTCTTCCAGGGTGTTTGTTTCTTTTCCTCTTTGCAAAGGTTAACAGAGATTCAAGTGACCCAAAATATATGCTCAACCTGTGTTTTACTTAAGTAAACACAGTAATTTTTTAAAAAACATTTTGTGGTTTATGGTATTTTGTTTTGGCCTTCAGTTGAT-GGGGGGGGCGgttgattttcataca-tcgtgtaaaataagggtcctgtttctcgcttttgcatccggata--tcatttttctcaaagctattcattgatcagactctgccttccacattgtggtgttctttatcaaagtcagttgactgtgtccatatttgtgttgtttttgtcctccctgtttttgtccatagttctaggtatttctttttatgcaagtaccatatatctactgcataactacaacttggcaatttaatttgatatcaaggattgtgggttctcactttgattgtatttctcaggattcctttagatattcattgcttttgtggttccctgtgatttttagcactatgtatttatttctgttaaTTTTTTTACA-ACATAAAGGGCcataattaggggtacatttttatacatataaattgggtaatgatcaaatca-gggtacttaggatctctattccctcatacaggtattatttttgtgtaaagagaacattcaaaattctccttgctctttagaaaaatgtaatacggttaagtccagtcaccaggctgaggagaacactcagatttattcttttaatgttaagataactttgtttccataacc-aatccttctccattccccttctgtctcccagactctggtaaccaatattgtgctttctacttctttaagataaacatcttaagat-ttcacatgagtggtatcat-gcagtgtttgtctttctaggcctagctcatcacatttatcataatgtttt-ccaggttcatctgggttgctctaaatgacactgtttgattattctgatagccgaagaatattccccagtgtatgtatatgagagtttcttgatctctttatctgtgggtgaacaggtaggttgaatatatagccagtagtgggactgctagatggtatggtatttcctttttttttttctattgtttgcaggacccccaactgttttttatagtgttaataccaatttacatttccacaaacagtccccctttctggaaattcataccaggaattttatttttaaatattttaatctttttgtgatgttcattctagttggagtgagataagatctgagagtggttttgatctacatttttctcatgagtagtaatgttaaccacgtttttataaatgttgaatctgttttctgtcttctttgcacaaatatctactcaggttatttgcccaattttggtctggttatttctctgttgttttg--tttttttgccagccgttagtgttactggcttgtgccttttcaaaagtaacctgttatccactgtatgtttgcccaaacttttcttataagttttagtatg-ccttttcattttgttcgttgtttctttccttttttgggcacaaattcttcagtttgatgcggtcccacatg----taatttcttggttAGTGTGCTATTGTTTACT-AATCAAGAAAAAACAAAATCACTGCCAAAGCAGT-CCATTGTCAGTGATTTTT-CCCTTGTATTTTTGTTACTTTTTGCAAACCGTGAGCATACATCCAAGTTTCCCTAAATATACATACACTCGAGGTTGTGTTTATAAGAGCTTTATGGTTGCAAGTTTTGTGAATTATTTCTGTATTATTTAGTACCACACTT s panTro1.chr22 10151516 3029 + 47338174 ATGAACCCCACCTGGAACCCTGTGGGTCTCCCTACTCCTTCCCGGCCGCTCCCTGCTTTCGGGCCCTGACTTCTAAGTGGGCATCTGGGCCTGAGTCCTCAGCGTTGGGGCGGTTGTGGGATCCTGGCCTCGGCAGCGTCCACACCGCCGCCGGGAAGGCTATGCCCCTGTCCGACCCACGTCCAGCCTATAGGAGCGCCCTGGCCCAGAGCCGGCAGTGAAGCGCTGGACTGGGTCCCTCCGAGCCCCACGGGCCTCTGAGCTGGGGTCTAGGGTTATTTTTTATGCCTCAGGACCTTTAGAAAGAGACCTCACTAGAGCAGGGGACATCTGtagtttcaattctttgaggagtttccagctatttaactgttttccatggtgtgtaccctaattttcatttccacctacagtgtatgagttcccctttctccaaaaccaaacccccattccaattttttttgttgttgttgttattttgagacggagtctcgctctgtctccaaggctggagggcagtggcgccatctcggctcactgcaacctccacctcctggtttcaaggaattctcctgtctcagcctcctgtgtagctgggactacaggcgcccgccaccacgcccagctaatttttgtatttttatttttagtagagacggggtttcacgatatttgtcaggctggtctgaaactcgtgacctcaggtgatccatccgccttggcttcccaaagtgctgggattacagacgtgagccacggctcccagaccctcctatttttaaaaaatttttctaggaatattcaataagtgtgagattatctgcgtgtga-tttgaattacagtattctaatgaatagttaattttgaggaccttatctcttatctgttgttcgattttatatctgtgcagaattgtcttttcaggttatttgtgaattattagattggattctttTTCTACTTTGTAGTGTTTTTTTGTGTACACGTTAGTTGACAACTCCTCGTGAATTACATGATTGCCTGAAatttttgcataatctatgggatgcttttttatttggaaagtagttttctttgctatgcagaaacttttcacgttgatgtagtccaatatgtttttttttttttgcgttttatgcgtgtCATAATGGTCACCCATATTAGAAAATATGCATCAGTAACAAAGCATTTAATTGTCAATGAGGTTTTTCTTCCAGGGTGTTTGTTTCTTTTCCTCTTTGCAAAGGTTAGCAGAGATTCAAGTGACCCAAAATATATGCTCAACCTGTGTGTTACTTAAGTAAACACAGTAATGTTTTTAAAAACATTTTGTGGTTTATGGTATTTTGTTTTGGCCTTCAGTTGATGGGGGGGGGCGgttgattttcatacattcgtgtaaaataagggtcctgtttctcgcttttgcatccggatacttcatttttctcaaagctattcattgatcagactctgccttccacgttgtggtgttctttatcaaagtcagttgactgtgtccatatttgtgttgtttttgtcctccctgtttttgtccatagctctaggtatttctttttatgcaagtaccatatatctactgcataactacaacttggcaatttaatttgatatcaaggattgtgagttctcactttgattgtatttctcaagattcctttagatattcattgcttttgtggttccctgtgatttttagcactatgtatttatttctgttaatttttttacacacataaagggccataattaggggtacatttttatacatataaattgggtaatgatcaaatcaggggtacttaggatctctattccctcatacaggtattatttttgtgtaaagagaacattcaaaattctccttgctctttagaaaaatgtaatacggttaagtccagtcaccaggctgaggagaacactcagatttattcttttaatgttaagataactttgtttccataaccaaatccttctccattccccttctgtctcccggactctggtaaccaatatcgtgctttctacttctttaagataaacatcttaagatattcacatgagtggtatcatggcagtgtttgtctttctaggcctagctcatcacatttaacataatgttttcccaggttcatctgggttgctctaaatgacactgtttgattattctgatagccgaagaatattccccagtgtatgtatatgagagtttcttgatctctttatctgtgggtgaacaggtaggttgaatgtatagccagtagtgggactgctagatggtatggtatttcc--tttttttttctattgtttgcaggacccccaactgttttttatagtgttaataccaatttacatttccacaaacagtccccctttctggaaattcatactaggaattttctttttaaatattttaatctttttgtgatgttcattctagttggagtgagataagatctgagagtggttttgatctacatttttctcatgagtagtaatgttaaccacgtttttataaatgttgaatctgttttctgtcttctttgcacaaatatctactcaggttatttgcccaattttggtctggttatttctctgttgttttgtttttttttgccagctgttagtgttactggcttgtgccttttcaaaagtaacctgttatccactgtatgtttgcccaaacttttcttataagttttagtatgcccttttcattttgttcg----ttctttccttttttgggcacaaattcttcagtttgatgcggtcccacatgtgtataatttcttggttAGTGTGCTATTGTTTACTAAATCAAGAAAAAACAAAATCACTGCCAAAGCAGTCCCATTGTCAGTGATTTTTCCCCTTGTATTTTTGTTACTTTttgcaaaccgtgagcatacatccaagtttccctaaatatacacACACTCGTGGTTGTGTTTATAAGAGCTTTATGGTGGCAAGTTTTGTGAATTATTTCTGTATTATTTAGTACCACACAT a score=8534.0 s hg17.chr13_random 27240 100 + 186858 ATATTTTGTATTATTTAGTACACtaaatatattttgtattatttagtataaatacaaaataatacaaaataaaaat-ttttttattatttaGTACACACTA s panTro1.chr22_random 641792 101 + 11555934 GCATTTTGTATTATTTAGTACACtaaatatattttgtattatttagtataaatacaaaataatacaaaataaaaatattttttattatttaGTACACACTA a score=328095.0 s hg17.chr13_random 27340 3632 + 186858 TTTGTATTATTTAGTACCACACTTTttgcaaaccgggagcatacatccaagtttccctaaatatacacACACTCGAGGTTGTGTTTATAAGAGCTTTATGGTTGCAAGTTTTGTGAATAATCTTTAATCCTTTTGAGTTAAAGTGTTTTTTTTTTTTGGTACCACAAGAGTCCTGTATTATTTAGTACCACaagaatcctgtattattcttttgcatatggatatctagttttggaaaccttccccattgtgttgttttggtggtgttttgaaaaatgtgttcactctgtgtaaatttgtgtttattattgagcgccctcattttgctcactggtctgtgtttctctgtgtatgccagtaacatatgggttggttaactagggattttcctttaattagaacccagggaatgtgatgcagcccatatggtttgtatttctcaggattgctttagaaattcagggtgtttcatatttccacataaattttggcattgtttctttgtatttctTAAAACACTATttgctatatactaagtgtatataagcagagggtacaagaaagatttcgatacatgtatatgttgagtaatgaaaaaatcaggttatttagcatctcttcacctcatagttactactttttgagtggtaacaacattcagaatctttccttctagctactttgaaatatatgatacatttgtattaaggctagtcaccctgctgtagaatagaagaccagaattgattactgtcatctaagagtaactttgtacccattactgattcctttccagaccctctccacctccccagcagcctctggtaatccctattgaactttctacttctaggagataaagcttttttcagtctacatgtctgagatcacatggcatgggactttctctaccaggctcatttgttggacctgatgttctccaggtttcttcatgtggctgcagatggcaggatttcccaaagctttatggctgaaacatattccgtggtgtatctgtatggcagtttcttcatccctgaagctgtgtacagacaggtaggttggttttgtaccttggccacagttaggagtgctttagtacccatgggaaggtaggtaactctcttcaacctagggatttcaagtgctttaattgtggaaccagtgatggggcttctagctgacatggtagttgtactgtgaattttttcaggaacctctagctgtttttcatagtgtgtatactaatttacatccccaccaatagcatttaagaggtttctcttctgtaagtctacactggctgtcacctttaaaaatttgtgttttgtttgtttttggtagtattcattctgagtggaatgagatggactcttagtgtggtttttgtggacatttttgtggggattggtgatgtcgagAaagttat-ttgagaaatccccacatcgttttcc-atggtgtctgaactagtttgcatttctaccaacagcagaccagcatcctctcctcctctgcctcgctggcattcattcttgtggactgtgtcataattgtcattctgaccagtgtgaaatactatctcatgggccttttgctttgcatttctctgatgattactgaggtagagaaatgtcctgtccgttggttgctataaaccttcctttgag--atgtgtgttttcatgccctttgccctttcttcactgagtttttgttttgctgatttatttgcttaacatttttgaggtagatcctggatatcagacttcatgagatgcatacatggggacattatctcccattgtgtaggctttctgtttactctgttggtaatttcttctgctgttcagcagctcttttgtatattaggtcccacttgtcaataattgttttagttgcacttgcttttggggacttaggcatatccatgctgtgccaaatcctctgtcaggaagtgtatttcctaggttccgttgcaggcttttaatagtttgaggtcttgcatttacagctttcattcatcttgagttaatttctgtacatggtgagacacaggggcccactgtttttcttctgcaactggctagccattttatcccagcaccatctattgagaggagggagttctttctccaaagcttgtttgtgtggtttttgttgaagatGAAGAAATAGTGTCAACCTGGTGTTTGATGTCCAATGTTCACCAGGCTCCAGGTGGACACCTCTAGAAGTagatctttacagatgagaatctggaacgggtttgctgacctgttttagtcgaaatgaattcctgaccttct--tgtcaggaggaaacagaaacctgatcatctgtagtgtacggtggtatcgtgattacttaaatcatcaaatgtggttattgggaatgatgtgcttTTTCAAGTGGTATATGAGAGGTAAAATTGCTATTGTAGTTGACTGTTGCAGTTATAATTTTGTCAACATGGTCTGTAAGAGTGCAATGGAGTCggcccggcgcggtggctcacgcctgtaatcccagtactttgggaggccaaggcgggccgatcatgaggtcaggagatcgagaccatcctggctaacacagtgagaccccgtctctactaaaaatacaaaaaattagccgtgcgtggcggcacacgcctgtagtcccagctactcgggaggccgaggcaggagaatggcgtgaacctaggaggcagagcttgcagtgagccgagattgcgccactgcactccagcctgggcaacagagcaagactccatctcaaaaaaaaaaaaaaa--------------GAGTGCAATGGAAAGCTGGTAGAAAATGGACATTGTTTAAAGAccaaaacaaccacactactttgctaatccctatcagctaaagcctagagaatatatgaggcatagatttacatggtgtttgactaaggcatgcagaatataatcttgacataggctaagtttatcaacatggatacatagagattctgaagttaaagtcttagcccaagaag-ttagaaggggtgctcaagtttgtctgACAGAAACTGTGAATCCACACTGGCCTGCTTATTTTGAGGTTGTGTTGCCAGAGCTTTCCTAGCATAATAAAGAGAGGTGCATACAAAGGAATAGGAATAGTAGGAGGTGGGGGTAAAAATATCAGGTGTGATCCACATGCCAAGCCGACCCCCACTGTGTCCCACAGGAAGCCCCAGAAGATGTTTCTCTAAGAAATTAAGGATTCGTTTGTTGGGGAGGGCTGCTGGCATGATTGAAAAGTACTGTGACGGCTGAATTTTGTGGGCTTGGGGAGATTGTGGGTTCTCTGATTTCAAGGGGAATGATGTGATCCTAGAGTTGCAAAGAACAAGTGACAGTGGAGGCGCTTATGCTTTGTGATTGCACTAGAGACAAGGAAGACACAACTAGAATAATGGGGAGCAGGAATGGAGCGGCCAACAGAATATCTGACTGTTAGGGATCTTTGATGAAGGCTGATTCTCAGGGAGTGAACTAGATCAGTGACCAACTATTTGTCTTTATATAACTGGGTAATGTGGATGGATTCTAATAAAGGGACTACTTACAGCACAGCAGGAAAGACACAAAGAAACCAGACAGAAGAGTGTaagtagtaagggg s panTro1.chr22 10154545 3650 + 47338174 TTTGTATTGTTTAGTACCACACTTTttgcaaaccgtgagcatacatccaagtttccctaaatatacacACACTCGAGGTTGTGTTTATaagagctttatggttacaagttttgtgaataatctttaatccttttgagttaaagtgttttttttt---ggtaccacaagagtcctgtattatttagtaccacaagagtcctgtattattcttttgcatatggatatctagttttggaaaccttccccattgtgttgttttggtggtgttttgaaaaatgtgttcactctgtgtaaacttgtgtttattatggagtgccctcattttgctcactggtctgtgtttctctgtgtatgccagtaacatatggaatggttaactagggattttcgtttaattagaactcagggaatgtgatgcagcccatattgtttgtatttctcaggattgctttagaaattcagggtgtttcatatttccacataaattttggcattgtttctttgtatttctTAAAACACtatttgccatatactaagtgtatataagtagagggtacaaggaagatttcgatacatgtatatgttgagtaatgaaaaaatcaagttatttagcatctcttcacctcatagttactactttttgagtggtaacaacattcagaatctttccttctagctactttgaaatatatgatagatttgtattaaggctagtcaccctgctgtagaatagaagaccagaattgattactgtcatctaagagtaactttgtacccattactgattccttcccagaccctctccacctccccagcagcctctggtaatccctattgaactttatacttctaggagataaagcttttttcagtctacatgtctgagatcacgtggcatgggactttctctaccagtctcatttgttggacctgatgttctccaggtttcttcatgtggctgcagatggcaggatttcccaaagctttatggctgaaacatattccgtggtgtatctgtatggcagattcttcatccctgaagctgtgtacggacaggtaggttggttttgtaccatggccacagttaggggtgctttagtacccatgggaaggcaggtaactctcttcaacctggggatttcaagtgctttaattgtggaaccagtgatggggcttctagctgacatggtagttgtactgtgaattttttcaggaacctctagctgtttttcatagtgtgtatactaatttacatccccaccaatagcatttaagaggtttctcttctgtaagtctacactggctgtcacctttaaaaatttgtgttttgtttgtttttggtagtattcattctgagtggaatgagatggactcttagtgtggtttttgtggacatttttgtgaggattggtgatgttgagAAAGTTAAAttgagaaatccccacatcgttttcccatggtgtctgaactagtttgcatttctaccaacagcagaccagcatcctctcaacctctgcctcgctggcattcattcttgtggactgtgtcataattgtcattctgaccagtgtgaaatactatctcatgggccttttgctttgcatttctctgatgattactgaggtagagaaatgtcctgtccgttggttgctataaaccttcctttgaggaatgtgtgttttcatgccctttgccctttcttcactgagtttttgttttgctgatttatttgcttaacatttttgaggtagatcctggatatcagacttcatgagatgcatatgtggggacattttctcccattgtttaggctttctgtttactctgttggtaatttcttctgctgttcagcagctcttttgtatattaggtcccacttgtcaataatttttttagttgcacttgcttttggggacttaggcatatccatgctctgccaaatcctctgtcaggaagtgtgtttcctaggttcccttgcaggcttttaatagtttgaggtcttgcatttacagctttcattcatcttgcattaatttctgtacatggtgagacacaggggcccactgtttttcttctgcaactggctagccattttatcccagcaccatctattgagaggagggagttctttctccaaagcttgtttgtgtggtttttgttgaagatGAAAAAATAGTGTCAACGTGGTGTTTGATGTCCAATGTTCACCAGGCTCCAGGTGGACACCTCTAGAAGTAGATCTTTACAGATGAGAATCTGGAACTGGTTTGCTGACCCGTTTTAGTCGGAATGAATTCCTGACCTTCTATTGTCAGGAGGAGACAGAAACCTGATCATCTGTAGTGAACAGTGGTATCGTGATTACTTAAATCATCAAATGTGGTTATTGGGAATGATGTGTTTTTTCAAGTGGTATATGAGAGGTAAAATTGCTATTGTAGTTGACTGTTGCAGTTATAATTTTGTCAACATGGTCTGTAAGAGTGCAATGGAGTCggcccggcatggtggctcacgcctgtaatcctagtactttgggaggccaaggcgggccgatcatgaggtcaggagatcaagaccatcctggctaacacagtgagaccccgtctctactaaaaatacaaaaaattagctgtgcgtggtggcacacgcctgtaatcccagctacttgggaggctgaggcaggagaatggcatgaacctaggaggcagagcttgcagtgagctgagattgcaccactgtactccagcctgggcgacagagcaagactccttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGAGTGCAATGGAAAGCTGGTAGAAAATGGACATTGTTTAAAGAccaaaacaaccacactactttgctaatccctatcagctaaagcctagagaatatatgaggcatagatttacatggtgtttgactaaggcatgcagaatataatcttgacataggttaagtttatcaacatggatacatagagattctgaagttaaagtcttagcccaagaaggttagaaggggtgctcaggtttgtctgacagaaactgtgaatccacactggcctgcttattttgaggttgtgttgccagagctttcctagcataataaacagaggtgcatacaaaggaataggaatagtaggaggtgggggtaaaaatatcaggtgtgatccacatgccaagccgacccccactgtgtcccacaggaagccccagaagatgtttctctaagaaattaaggattcgtttgttggggagggctgctggcatgcttgaaaagtactgtgacggctgaattttgtgggcttggggtgattgcgggttctctgatttcaaggggaataatgtgatcctagagttgcaaagaacaagtgacagtggaggcgcttatgctttgtgattgcactagagacaaggaagacacaactagaataatggggagcaggaatggagcggcccacagaatatctgactGCTAGGGATCTTTGATGAAGGCTGATTCTCAGGGAGTGAACTAGATCAGTGACCAACTATTTGTCTTTATATAACTGGGTAATGTGGGTGGATTCTAATAAAGGGACTACTTACAGCACAGCAGGAAAGATACAAAGAAACCAGACAGAAGAGTGTaagtagtaagggg a score=123948.0 s hg17.chr13_random 30972 1417 + 186858 ccaagcagtcacctgactagagagagtgccagcttgccaagaaggcaccagacagaagctgtgatcttcagcaaagggacacagtctgcctgtgctgaccctgcaggggcagaggtgggggataaacacactcttctctcacctgtcttctgccacccccTCCATTAGCTGAACCCCAATAAAAGCATGAGGGTAAGGGAGATCTCTGCAGTATCCAATTCAGGTGAGCCTCCTAAGGAACAAAGCAGAACGTAGAAAAATTAAGAATGGGTCTAGGGAATAAAATAGAGATATGCACCGGAGTATGATGATGTGTCTGGGAAAGAATATACAAATACTTTTAAAATTACTAGACAATAAACCTGAGATGACACTAATACAGGTAAATCTCATTTAatggtaatatattccaagaaatgcatcattacgtgattttgtggctgtgcggacaccatagaatgtagtttatacaaacctagacagtgtagcctactacatacctaggctatatcgtacagcctattgctcctgggctacacacctgtgcagcacgtcactgtgctgaatacagtaggccagtagtccccaacacccaagccatggaccagcaccggttcgtgtcctgttaggaactgggcacaaagcaggagatgagtggctggccagccgagcattacttcctgagctccacctcctgtcagatcagcagcagcattagaccttcacaggagcgcaaaccctattgtgaactgcacatacaagggatctaggttgtgtgctccttataagaatctaactaggctgggtgctgtggctcacgcctgtaatcccaacactctgggaggccgaggcaggtggatcacaaggtcaagacactcctggccaacatgcaaaccccgtctctactaagaatacaaaaattagctgggtgtggtggcgcatgcctgtagtcccagctactcggggggctgaggcaggagaatcacttgaacccaggaggcagaggttgcagtgagccgagattgtgccactgcactccagcctggcgacagtgggagactcagtctaaaaaaaaaaaaaagaaaaaatagaatctaatgcctgatgatctgatgatctgaagtggaacagtttcagcccaaagccatccccactccatggaaaaattatctttcacaaaaccagtccttggtgtcaaaactttggggaccactgctgtaggcagttatatcacaatagtaatatctaaacatggaaaagatacagtaaaaacatagtacattgggagaccgaggcgggcggatcacctgaggtcagaagttcgagaccagcctgaccaacatggagaaacgccatctgtactaaaaatacaaaattagctgggtgtgctggcatgggcctgtaatcccagctactc s panTro1.chr23 19794383 1408 + 50034486 CCAAGCAGTCACCTGACTAGAGACAGTGCCAGCTTGCCAAGAAGGCCCCTAACAGACGCTGTGATCTTCAGCAAAGGGACACAGTCTCCCTTTACTGACCCTGCAGGGGCAGAGGTGAGGGATAAACACACTCTTCTCTCACCTATCTTCTGCCACCCCCTCCTTTAACTGAACCCCAATAAAAGCATGAGGGTAAGGGAGATCTCTGAAGTATCCAATTCAGGTGAGCCTCCTAAGGAACAAAGCAGAATGCAGAAAAATTAAGAGTGGGTCTAGGGAATAAAATAGAGATATGCACCAGAGTATGATGATGTGTCTGGGAAAGAATATACAAATACTTTTAAAATTACTAGACAATAAACCTGAGATGACACTAATACAGGTAATTCTCATTTAatggtaatatattccaagaaatgcatcattaggtgattttgtggctgtgcagacaccaaagagtgtactttatacaaacctagacagtgtagcctactacatacctaggctatatcgtacagcctattgctcctggactacacacctgtgcagcatgtcactgtgctgaatacagtaggccagtggtccccaacacccaagccatggaccagcaccggttcgtgtccttttaggaactgggcacaaagcaggagatgagtggctggccagccgagcattactgcctgagctccgcctcctgtcagatcagcagcagcattagatcttcacaggagtgcaaatcctattgtgaactgcacatacaagggatctaggttatgtgctccttatgagaatctaactaggctgggtgctgtggctcacgcctgtaatcccaacactctgggaggccgaggcaggtggatcacaaggtcaagacaatcctggccaacatggaaaccccgtctctactaaaaatacaaaaattagctgggtgtggtggcgcatgcctgtagtcccagctactcgggggactgagacaggagaatcacttgaacccgggaggcagaggttgcagtgagccgagattgtgccactgcactccagcctggcaacagtgggagactcagtct-----aaaaaaaaagaaaaaaaagaatctaa---ctaatg-cctgatgatctgaggtggaacagtttcagcccaaagccatccccaatctgtggaaaaattatctttcacaaaaccagtccctggtgtcaaaactttggggaccgctgctgtaggcagttatatcacaatagtaatatctaaacatggaaaagatacagtaaaaacaTagtacattgagagaccgaggcgggcggatcacctgaggtcagaagttcgagaccagcctgaccaacatggagaaactccgtctgtactaaaaatacaaaattagctgggagtgctggcgtgggcctgtaatcccagctactc a score=244573.0 s hg17.chr13_random 32389 2736 + 186858 attaggctgaggcaggagaatcacttgaaccccagaggcagaggttgcagtgagccaagatcgtgccattgcactccagcctgggcaacaaaataaaactccttctcaaaaaaaaagaaagaaagaaaaaaatatatatatattacaaaagttaaagagagtggtacaccagtataggacacctagcatgaacagaggttgcaggactggcagttgctctgatgagtcagtgagtacttggtgagtgaatgcaaaggcctaggatattactgtacataactatagactttatatgcactgtacacttaggctacactaaatgtatttaaaatttttctttctttaacaagttcatcttagcttatcataactttataaacttttaatttttttaactttttgattcttataa---cacatcttaaaacaaaaacacattgaacagctgtacagaaatactttatatccctattcgataagctttatttatttttattttttatgttttaaacttttttgttaaaaactaagatacaaacacacacactagcttagccctgtaagggtcaggataatcaatatcactgtcttccatttccaaatcttgtcccagtgaaaggtcttcagggacttcaagggcaataacatatatgcagctgtcatcttctatgataacaaggctttcttctggaagaactcctgaaagaccttcccgacgctgttttatagttaattatttttcatgagtagaagtactacactctaaaatatgaataaaatgtatagtattgtaaatactgttgacccttgaacagtgcaagggttaggggaccagctcctgtgcagttgaaaatccatatataactctgggctatccccaaacttaactactaatagcctattcttaactgcaagctttgctgatcaaataaacaattaatgcatactttgttaattatatactgtattctta-aagaaagagaaaagaaaattctattaagaaaatcataaggaggaggaaatatgtttactattcattaagtgaaagtggatcatcataaaggtcttcgtctgcatattcatgttgagcagcctgaggaagagaagaggagaagttgatcctgttgtctcaggggtgggagaagcagaaggaaatttgcatataagtgaacttgtgcatttcaaatccatgctgttcaaggagcaactgtacataaactagtcacatgatcatttattatcattaccaagtatgacatatggtacataattagatgtgctaacctttaatgccactgacaaatgtagtgggtttgcttataccagcctcactgcaaacacatgagtaatgcgttgtgctatgatgtcatcatggccacagtgttactagatggtaagaatttttcagctctgttatcttaagcgaccaccattgtatgcagtgtagcatttaccaaaaaaccattatgccacacaggacCATATTTGGGGCTTTTAGTGTCCCC-GTCCCCAAGATCCTTCTATTCAAAATGTGAGCTCATGCATGGTTTAAAATTTGTGATGGTGTGCAGTGGACACATGGTGGATTGACATATTTTTTTCTTTACTTTTGAATAGTTGGAtttttttttttttcaagacagagtctcactctgtcgcccaggctggagtgcagtggcgcgatctcagttcactgcaagctcgcaagctctaccttctgggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccaccaccaggcccagctaattttttatttttttaggcgagactggatttcactgtattagccacgatgttcttgatctcctgacctcgtgatccgcccaccttggccttccaaagtgctgggattacaggtgtgagccaccaagccc-agccGAAGATGACTTCTTAAAATAGACACGAAGTATGAAAATACTTGTAGCCCAAGTAAATTCTTATTAGAGGGAATCCACTGAAGAGGAGTAATCGTATGCATACAATGACATGTTATATAATAGATGTTAGTCAGCTGATACTTGTTCAATGGGCTCATGGACAGATGCACATAATATTAAGGATAGAAGGTATTCACGACTTTACATAATCAAATTGTATCTGGACCAATGTAGAACAACTAAGGctaatatgacagccttccctcaggggctacccagtcaacttgcagattgacgacattgaaacccatccctcagggattttgttctcactgaaatagacacttattctgggtacgaactcaccctttacattcgcagttgttctgctggtactaccatgcgtgaactt---taatttgttattcaccatcatgatatcccatacaaaattgtttttgactaaggaattcatttcactgcaaaaaaaaaaaatatggtattagg-ctcatgtttgtgcaattcattggatttacaacataatccccatcacctagaagaatctgacatgatggaatggaatcatgtaactcagttaatgctcccagctggtaaacaacacatagtgaggttgggatgttgtcctacagtgtgtggtataaacttagagtcagtgaccaccatgtagtgttatttatcttacaacaaaaacacatgaatctgaaagtcaaggggagggggctccctgcactattatgcctaatttgcacttgcagactttttcttcccttttgtgaaactttgggttctcctcattt s panTro1.chr22 10159612 2736 + 47338174 attaggctgaggcaggagaatcacttgaaccccagaggcagaggttgcagtaagccaagatcgtgccattgcactccagcctgggcaacaaaatagaactccttctcaaaaagaaagaaagaaagaaaaaaatatatatatattacaaaagttaaacagagtggtacaccagtacaggacacttagcatgaacagaggttgcaggactggcagttgctctgatgagtcagtgagtacttggtgagtgaatgtgaaggcctaggatattactgtacataactatagactttatatgcactgtacacttaggctacactaaatgtatttaaaatttttctttctttaacaagttcatcttagcttattgtaactttataaacttttaatttttttaactttttgattcttataataacacatcttaaaacaaaaacacattgaacagctgtacagaaatactttatatccttattcgataagctttatttatttttattttttatgttttaaacatttttgttaaaatctaagatacaaacacacacacaagcttagctctgtaagggtcaggataatcaatatcactgtcttccatctccaaatcttgtcccagtgagaagtcttcagggtcttcaagggcaataacatacatgcagctgtcatcttctatgataacaaggctttcttctggaagaactcctgaaagaccttcccgacgctgttttatagttaattatttttaatgagtagaagtactacactctaaaatatgaataaaatgtatagtattgtaaatactgttgatccttgaacagtgcaagggttaggggaccagctcctgtgcagttgaaaatccatatataactctgggctatccccaaacttaactactaatagcctattcttaactgcaagctttgctgatcaaataaacaattaatgcatactttgttaattatatactgtatccttataataaagagaaaagaaaattctattaagaaaatcataaggaggagataatatgtttactattcattaagtgaaagtggatcatcataaaggtctttgtctgcatattcatgttgagcagcctgaggaagag-----gagaagttgatcctgttgtctcaggggtgggagaagcagaaggaaatttgcctataagtgaacttgtgcatttcaaatccatgctgttcaaggagcaactgtacataaactagtcacatggtcatttattatcattaccaagtatgacatatggtacataattagatgtgctaacctttaatgccactgacaaatgtagtgggttggcttataccagcctcactgcaaacacatgagtaatgcgttgtgctatgatgtcatcatggccacagtgttactagatggtaagaatttttcagctctgttatcttaagcgaccaccattgtatgcagtgtagcatttaccaaaaaaccattatgccacacaggacCATATTTGGGGCTTTTAGTGTCCCCTGTCCCCAAGATCCTTGTATTCAAAATGTGAGCTCATGCGTGGTTTAAAATTTGTGATGGTGTGCAGTGGACACATGGTGGATTGACATATTTTTTTCTTTACTTTTGAATAGTTGGAttttttttttt--caagacagagtctcactctgtcacccaggctggagtgcagtggcgcgatctcagctcactgcaagctcgcaagctctaccttctgggttcacgccattctcctgcctcagcctcctgagtatctgggactacaggtgcccaccaccaggcccagctaattttttatatttttaggagagactggatttcactgtattagccacgatgttcttgatctcctgacctcgtgatccgcccaccttggccttccaaagtgctgggattacaggtgtgagccaccacgcccCAGCCGAAGATGACTTCTTAAAATAGACACGAAGTATGAAAATACTTGCAGCCCAAGTAAATTCTTATTAGAGGGAATCCACTGAAGAGGAGTAATCATATGCATACAATGACATGTTATATAATAGATGTTAGTCAACTGATACTTGTTCAATGGGCTCATGGACAAATGCACATAATATTAAGGATAGAAGGTATTCACGACTTTACATAATCAAATTGTATCTGGACCAATGTAGAACAACTAAGGctaatatgaccgccttccctcaggggctacccagtcaacttgctgattgatgacattgaaacccatccctcagggattttgttctcaccgaaatagacacttattctgggtacgaactcaccttttacatttgcaattgttctgctggtactaccatgagtgaacttaaataatttgttattcaccatcatgatatcctatacaacattgtttttgactaaggaattcatttcactgcaaaaaaaaa---tatggtattaggactcatgtttgtgcaattcattggatttacaacataatccccatcacttagaagaatctgacatgatggaatggaatcatgtaactcagttaatgctcccagctggtaaacaacacatagtgaggttgggatgttgtcctacagtgtgtggtataaacttagagtcagtgaccaccatgtagtgttatttatcttacaacaaaaacacatgaaactgaaagtcaaggggagggggctccctgcactattatgcctaatttgcacttgcaaactttttcttcccttttgtgaaactttgggttctcctcattt a score=3522.0 s hg17.chr13_random 35125 47 + 186858 agagatattgatt-ccccagggaggaaACTAACT--------TCTTTTTTTTTTCT s panTro1.chr22 10162348 46 + 47338174 agagatattgatttccccagggaggaaAGTAACT--------TCTTTTTTTTTT-- s canFam1.chr3 61516771 53 - 95079643 AAGGATGTTAATT-ATTAAAAAAATAGACTTACTCTGTGATGttattatttttt-- a score=69520.0 s hg17.chr13_random 35172 140 + 186858 TTAATTTACAAAAGG-TAGGCTACGTTTA-TTAGAGTCACACACAGTTGACTGTCTCAGTGTGACTCAAGACCACAAAAAAC-CCATTTTTCCTTCACTTCTG----AGTCCTGGGGTTAAGACTTAGACCAGCAAGC-GT--ACTGCTT s panTro1.chr22 10162394 144 + 47338174 TTAATTTACAAAAGG-TAGGCTATGATTA-TTAGAGTCACACACAGTTGACTGTCTCAGTGTGACTCAAGACCACAAAAAAAACCATTTTTCCTTCACTTCTG----AGTCCTGGGGTTAAGACCTAGACCAGCAAGCTGTTGACTGCTT s mm5.chr7 36840907 144 - 133051633 TTCATTTACAAAAGG-TAAGCTATGTTTATTTGGAGTCACAAGCAGCTGACTGAGTCACCGTGACTCAAGACCACAAAGAAA-CC-CTTTGCCTCCACTTCGGTCTCAGCCCTGTGGTGAAAACCTCGACCAGCACAA-GT--GCCTCTT s rn3.chr1 166509415 144 + 268121971 TTCATTTACAAAAGGTTAAGCTCTGTTTATTTGGAGTCACAAGGAGCTGATTGAGTCACTGTGACTCAAGACCACAAAGAAA-CC-CTTTGCCTCCACTTCAGTCTCAAGCCTGTGGTGAAAACCTCGACCAGCACAA-GT--GCT-CTT s canFam1.chr21 19239693 141 - 53028000 TTCATTTACAAAAGG-TAGGCTAGATTTATTTAGAGTCACAAGCAGTTGACTGACTCAGTGTGACTCAA-ACCACAAGTAAA-CC-ATTCTACTTCACTCCATTCTGAGTCCTAGGGTG--GCCCAAGACTGGCAGGA-GT--ACTGCGT a score=3793.0 s hg17.chr13_random 35312 7 + 186858 GGGGTGG s panTro1.chr22 10162538 7 + 47338174 GGGGTCC s mm5.chr7 36841051 7 - 133051633 GGGGCTC s rn3.chr1 166509559 7 + 268121971 GGGGCCC s canFam1.chr21 19239834 7 - 53028000 GGGACCC s galGal2.chr6 15458645 7 + 33893787 GAAGTTT a score=684.0 s hg17.chr13_random 35319 2 + 186858 CT s panTro1.chr22 10162545 2 + 47338174 CT s mm5.chr7 36841058 2 - 133051633 AT s rn3.chr1 166509566 2 + 268121971 AT s canFam1.chr21 19239841 2 - 53028000 AT s galGal2.chr6 15458652 2 + 33893787 CT s fr1.chrUn 297117449 2 + 349519338 CC a score=146807.0 s hg17.chr13_random 35321 77 + 186858 TCACAGGTTTACACGTTTTTCATTGAGGGCAATCTGTGACTGTGTGAGGTTGGCCAGGTAGGCCACCATCAACAGGT s panTro1.chr22 10162547 77 + 47338174 TCACAGGTTTACAAGTTTTTCATTGAGGGCAATCTGTGACTGTGTGAGGTTGGCCAGTTAGGTCACCATCAACAGGT s mm5.chr7 36841060 77 - 133051633 TCACAGGTTTACAAGTTTCTCGTTGAGGGCAATCTGTGACTGGGTGAGATTGGCCAGGTAGGTCACCATCAGCAGGT s rn3.chr1 166509568 77 + 268121971 TCACAGGTTTACAAGTTTCTCGTTGAGGGCAATCTGTGACTGGGTGAGATTGGCCAGGTAGGTCACCATCAGCAGGT s canFam1.chr21 19239843 77 - 53028000 TCACAGGTTTACAAGTTTCTCATTGAGGGCAATCTGTGACTGCGTGAGATTGGCCAGGTAGGTCACCATCAGCAGGT s galGal2.chr6 15458654 77 + 33893787 TTATAAACTCAGAAGTTTTTCATTGAGAGCTATCTGTGACTGTGTGAGGTTTGCCAAGTAGGTTACCATCAGAAGGT s fr1.chrUn 297117451 77 + 349519338 TCAGAGCAGGACCAGCTTCTCGTTCAGAGAGATCTGTGCCTGGGTCAGGTTAGCCAGGTAGGTCACCATCAGCAGGT s danRer1.chr1 5352475 77 + 40858791 TCACAGAACAACTAGTTTCTCGTTAAGCGCGATCTGAGCTTGAGTGAGATTGGCCAGGTAGGTCACCATCAACAGAT a score=153229.0 s hg17.chr13_random 35398 88 + 186858 CATTGATGTTGCTGTGGAGCATGGTCTCAAAGTCATCGGGAACTATTTTCGGTACTTGGTTAACCAGGCTCATCAGGAAGTGGCCCAC s panTro1.chr22 10162624 88 + 47338174 CATTGATGTTGCTGTGGAGCATGGTCTCGAAGTCATCGGGAACTATTTTTGGTACTTGGTTAACCAGGCTCATCAGGAAGTGGCCCAC s mm5.chr7 36841590 88 - 133051633 CATTGATGTTGCTGTTGAGCATGGTCTCAAAGTCATCAGGAACTATCTTGGGTACTTGGTTGACAAGGCTCATCAAGAAGCGGCCCAC s rn3.chr1 166510084 88 + 268121971 CGTTGATGTTGCTGTTGAGCATGGTTTCAAAGTCATCAGGAACTATCTTGGGTACTTGGTTGACAAGGCTCATCAAGAAGCGGCCTAC s canFam1.chr21 19240490 88 - 53028000 CATTGATGTTGCTGTTGAGCATGGTCTCAAAGTCATCGGGAACTATCTTGGGTACTTGGTTAACCAGACTCATCAAGAAGCGGCCCAC s galGal2.chr6 15459348 88 + 33893787 CATTAATATTGCTGTTCAACATTGTCTCAAAGTCCTCTGGTGAAATCTTTGGCACCTGGTTAATAAGATCCATCAGGAAACGCCCAAC s fr1.chrUn 297117687 88 + 349519338 CATTGATGTTGGAATTAAGCATGTTCTCAAAGTCTTCAGGGGAGATGGTGGGAACTTTGTTGACCAGGTCCGTCAGGAAGCGGCCCAC s danRer1.chr1 5352853 88 + 40858791 CATTAATGTTGGAGTTCAACATGTTCTCAAAGTCTTCTGCTGGGATCTTGGGCACTTTGTTCACAAGATCCATCAGGAAACGACCAAC a score=27263.0 s hg17.chr13_random 35486 36 + 186858 CTTCCTGATTGTATTGTCAGCTGACACCTTTGCAGA s panTro1.chr22 10162712 36 + 47338174 CTTCCTGATGGTATTGTCAGCTGACACCTTTCCAGA s mm5.chr7 36841678 27 - 133051633 C---------GTGTTGTCAGCAGACACTTTCCCAGA s rn3.chr1 166510172 27 + 268121971 T---------GTGTTGTCAGCAGACACTTTCCCAGA s canFam1.chr21 19240578 27 - 53028000 A---------GTATTGTCAGCTGACACCTTTCCAGA s galGal2.chr6 15459436 27 + 33893787 G---------GTGTTGTCAGCAGCCACTTTGCCAGA s danRer1.chr1 5352941 27 + 40858791 ---------ACTGTTATCTGCCATCACTTTACCAGA a score=443.0 s hg17.chr13_random 35522 1 + 186858 T s panTro1.chr22 10162748 1 + 47338174 T s mm5.chr7 36841705 1 - 133051633 C s rn3.chr1 166510199 1 + 268121971 C s canFam1.chr21 19240605 1 - 53028000 C s galGal2.chr6 15459463 1 + 33893787 C a score=3225.0 s hg17.chr13_random 35523 2 + 186858 AG s panTro1.chr22 10162749 2 + 47338174 AG s mm5.chr7 36841819 2 - 133051633 AG s rn3.chr1 166510312 2 + 268121971 AG s canFam1.chr21 19240744 2 - 53028000 AG s galGal2.chr6 15459579 2 + 33893787 AA s fr1.chrUn 17334266 2 - 349519338 AG a score=161368.0 s hg17.chr13_random 35525 130 + 186858 TATATCCTCTGCATATTGCAACACTATGCTCAGGGCATCCTGGATGTGAGCTGATGCCCCTCCTACTTGCTGCAGGTCACTTGAGAGTCCAACCACT-----CTGTTGGGGCTAAAGCAGGTCTTCATGATCAGG s panTro1.chr22 10162751 130 + 47338174 TATATCCTCTGCATATTGCAACACTATGCTCAGGGTATCCTGGATGCGAGCTGATGCCCCTCCTACTTGCTGCAAGTCACTTGAGAGTCCAACCACT-----CTGTTGGGGCTAAAGCAGGTCTTCATGATCAGG s mm5.chr7 36841821 130 - 133051633 CACATCCTCAGCATACTGTAATACAGTGCTTAGAGCATCCTGGATGCGAGCTGAGGCCCCTCCCACTTGTTGTAAGTCACTTGAGAGTCCAATCACC-----CGGTTGGGGCTAAAACACGTCTTCATGATGAGG s rn3.chr1 166510314 130 + 268121971 CACATCCTCAGCATACTGCAATACAGTGCTTAGAGCATCCTGGATCCGGGCTGAGGCCCCTCCCACTTGCTGTAAGTCACTTGAGAGTCCAATCACC-----CGGTTGGGGCTAAAACATGTCTTCATGATGAGG s canFam1.chr21 19240746 130 - 53028000 CACATCCTCTGCATACTGCAACACCGTGCTTAGGGCATCTTGGATGCGAGCCGATGCCCCTCCTACTTGCTGCAAGTCGCTTGAGAGTCCAATCACC-----CGGTTAGGGCTAAAACAGGTCTTCATGATCAGG s galGal2.chr6 15459581 130 + 33893787 TACATCCTCTGCATACTGTAGCACCATACCCAGAGTGTCCTGAATCCTGGCTGAGGCTGACCCCACCTGCTGTAAGTCACTGGACAAGCCGATCACT-----CGATTAGGGCTAAAGCAGGTCTTCATGATGAGA s fr1.chrUn 17334268 130 - 349519338 CACATCCTCAATGTACTCAAGTACAGTTGACAACATGTCCTGTATCCTGGCTGCAGAACCAGCCACCTGGGACAGGTC-----AGAGGTCAGCCCCTTGCTGCGACTGGGCACGACACGGGTCCTCTGGAGCAGG s danRer1.chr1 5353849 130 + 40858791 CACATCCTCTATATAAGAGAGCACTGTTGCCAGCATTTCCTGCACGCGTCCTGCAGCACCGGCTACCTGGGCCAGATCTGTGGTCAGTCCATTGGTG-----CGACCGGGAGACGCACGAGTTCTCTGGAGAAGA a score=-14260.0 s hg17.chr13_random 35655 9 + 186858 TCAACTCTG------------------------------------------------------------------------------------------- s panTro1.chr22 10162881 9 + 47338174 TCAACTCTG------------------------------------------------------------------------------------------- s mm5.chr7 36841951 9 - 133051633 TCAACTGTG------------------------------------------------------------------------------------------- s rn3.chr1 166510444 9 + 268121971 TCAACTGTG------------------------------------------------------------------------------------------- s canFam1.chr21 19240876 9 - 53028000 TCAACTGTG------------------------------------------------------------------------------------------- s galGal2.chr6 15459916 9 + 33893787 TCACCTCCT------------------------------------------------------------------------------------------- s fr1.chrUn 17334479 6 - 349519338 CCGCCT---------------------------------------------------------------------------------------------- s danRer1.chr1 5353979 100 + 40858791 TCCACTATAGAGAAATAAGTTTAAACCATTAGAAAAATATACTTACAAGAAAACACCCTAATCTGTAAACACAGTAAATCCATTCAATAACTGACCTCCA a score=127992.0 s hg17.chr13_random 35664 77 + 186858 ATGCATTCAGTGTCATAGTATGCATATTTCACTGTCAAAGGTGTGAA---CACTCCCACGGTCCTCCCAGGGACACCCAT s panTro1.chr22 10162890 77 + 47338174 ATGCATTCAGTGTCATAGTATGCGTATTTCACTGTCAGAGGTGTGAA---CAATCCCACGGTCCTCCCAGGGACACCCAT s mm5.chr7 36842322 80 - 133051633 ATGCGTTCAGTGTCATAATACGCGTACTTCACTGTGAGAGGTGTGAACATCACTCCCATGGTCCTCCCAGGGACACCCAT s rn3.chr1 166510902 80 + 268121971 ATGCGCTCAGTGTCATAATACGCATACTTCACTGTGAGAGGGGTGAACATCACTCCCATGGTCCTCCCAGGGACGCCCAT s canFam1.chr21 19241341 80 - 53028000 ATACGTTCAGTGTCATAATACGCATATTTCACTGTTAGAGGTGTGAACATCACCCCCATGGTCCTCCCAGGGACACCCAT s galGal2.chr6 15459925 80 + 33893787 ATCCGCTCTGTGTCGTAATAAACATACTTCACTGTCAGTGGTGTGAACATCACGCCCATAGTTTTACCAGGGACTCCCAT s fr1.chrUn 17334485 80 - 349519338 ATCCTCTCCGTGTCTAAGTAAATGTATGTGACACTCAGTGGGGTGAACATAACACCCCCCGTCCTGCCTGGCACACCCAT s danRer1.chr1 5354079 80 + 40858791 ATGCGCTCTGTGTCGTAGTAAATGTACTTGACTGACAGAGGGGTGAACATCACGCCAACGGTCTTGCCTGGCACTCCCAT a score=6270.0 s hg17.chr13_random 35741 7 + 186858 TAAAGTG s panTro1.chr22 10162967 7 + 47338174 TAAAGTG s mm5.chr7 36842402 7 - 133051633 TAAAGTG s rn3.chr1 166510982 7 + 268121971 TAAAGTG s canFam1.chr21 19241421 7 - 53028000 TAAAGTG s fr1.chrUn 17334565 7 - 349519338 CTGAGCA a score=237943.0 s hg17.chr13_random 35748 127 + 186858 CTGACATAGGCTTTGATGCTCATATGGCCGTTCTGGAGACTTGTGTCCACAGTGAGGTGGATGGGGTTGGGGGCCTCTCGGCTGTAGTACTCATGGATCAGCACAGAGTGCTCTGTGATGTCATGGC s panTro1.chr22 10162974 127 + 47338174 CTGACATAGGCTTCGATGCTCATATGGCCGTTCTGGAGACTTGTGTCCACAGTGAGGTGGATGGGGTTGGGGGCCTCTCGGCTGTAGTACTCATGGATCAGCACAGAGTGCTCTGTGATGTCATGGC s mm5.chr7 36844052 127 - 133051633 CTGACATAGGCCTTGATGCTCATGCGCCCATGCTGGAGACCTGTGTCCACCGTGAGGTGAATGGGGTTCGGGGCCTCCCTGCTGTAGTACTCATGGATCAGCACTGAGTGTTCTGTGATGTCATGGC s rn3.chr1 166512299 127 + 268121971 CTGACATAGGCCTTGATGCTCATGCGCCCATTCTGAAGACCCGTGTCCACTGTGAGGTGAATGGGGTTCGGGGCCTCCCTGCTGTAGTACTCATGGATCAGCACCGAGTGCTCTGTGATGTCGTGCC s canFam1.chr21 19242770 127 - 53028000 CTGACATAGGCCTTGATGCTCATGCGGCCATTCTGGAGGCTGGTGTCCACAGTGAGGTGAATGGGGTTGGGGGCTTCTCGGCTGTAGTACTCATGGATCAGCACAGAGTGCTCTGTAATGTCATGGC s galGal2.chr6 15461774 127 + 33893787 CTGACATAGGCTTTAATGCTCATGCGTGAATTCTGGAGACTTGTGTCCACAGTGAGGTGGATTGGGTTGTGTGCTTCCCGGCTGTAGTACTCGTGGATCAGGACAGAATGTTCTGTGATGTCGTGCC s fr1.chrUn 297118680 127 + 349519338 CTGACGTAGGCGCGGATGTTCATCTTGCCGCTCTGTAGTGACGTATCAATGGTCAGGTGAATGGGGTTAGAGGCTTCCCGGCTGTAGTACTCATGGATGAGCACGGAATGCTCCGTGATATCAAATC s danRer1.chr1 5357235 127 + 40858791 CTGACGTAGGCCCGGATGTTCATTTTGTTGCTCTGCAGTGCCGTGTCCACAGTGAGGTGAATAGGGTTTGGAGCCTCTCTGCTGTAATACTCATGGATCAGAACCGAGTGCTCAGTGATGTCAAATC a score=10300.0 s hg17.chr13_random 35875 8 + 186858 CGGCAGCG s panTro1.chr22 10163101 8 + 47338174 CTGCAGCG s mm5.chr7 36844179 8 - 133051633 CTGTGGCA s rn3.chr1 166512426 8 + 268121971 CTGTGGCA s canFam1.chr21 19242897 8 - 53028000 CTGTAGCA s galGal2.chr6 15461901 8 + 33893787 CTGTTGCA s fr1.chrUn 297118807 8 + 349519338 CTGTTGCG s danRer1.chr1 5358788 8 + 40858791 CGGCCACA a score=109804.0 s hg17.chr13_random 35883 80 + 186858 TACCACCCCAAGATGAGCTCAT-TTGGAGAAACTTTTTTATGCAGTTCATACAT-------------GTTCTTAGCAAATTCCATGTCAACAAC s panTro1.chr22 10163109 80 + 47338174 TACCACCCCAAGATGAGCTTAT-TTGGAGAAACTTTTTTAGGCAGTTCATACAT-------------GTTCTTAGCAAATTCCATGTCAACAGC s mm5.chr7 36844480 80 - 133051633 TACCAGCCTAGGATGAGCTCAT-TTGGGGAGACTTTTTTATGTAATTCATACAT-------------ATTCTTAGCAAATTCCATGTCAACAGC s rn3.chr1 166512750 80 + 268121971 TACCAGCCTAGGATGAGCTCAT-TTGGGGAGACTTTCTTATGCAATTCATACAT-------------ATTCTTGGCAAATTCCATGTCAACAGC s canFam1.chr21 19243325 80 - 53028000 TACCAGCCCAAGATGAGCTCAT-TTGGAGAGACTTTCTTGTGCAATTCATACAT-------------GTTCTTAGCGAATTCCATGTCAACAGC s galGal2.chr6 15461909 91 + 33893787 ---TACCTTGAAAAAAGCAAATGTTGGAAGATCACTCTTCTAATGTTCAAATGCCCAGCGTTTGTTGGTACTTAACAGGTTCGTATTCTAAAAC s fr1.chrUn 297118895 80 + 349519338 GACCATCCAACAATGATCTCTG-TGGGCGACACCCTCTTGTGGAGCTCGTACAT-------------GTTTTTGGCAAACTCCATGTCCACAGC s danRer1.chr1 5358796 80 + 40858791 TACCATCCAACAATGACTTCAC-TCGGCGAAACCTTCTTATGAAGCTCATACAT-------------GTTCTTGGCGAACTCCATGTCAACAGC a score=100.0 s hg17.chr13_random 35963 1 + 186858 C s galGal2.chr6 15462000 1 + 33893787 C a score=5301.0 s hg17.chr13_random 35963 4 + 186858 CACT s panTro1.chr22 10163189 4 + 47338174 CACT s mm5.chr7 36844779 4 - 133051633 CACT s rn3.chr1 166513046 4 + 268121971 CACT s canFam1.chr21 19243405 4 - 53028000 CACC s fr1.chrUn 297118975 4 + 349519338 AACC s danRer1.chr1 5358876 4 + 40858791 CACC a score=91.0 s hg17.chr13_random 35967 1 + 186858 T s danRer1.chr1 5358880 1 + 40858791 t a score=91638.0 s hg17.chr13_random 35967 66 + 186858 TCA---TCTGACTCATTGTATGACACTGAAAAGCAATTGGTGACCTCCACAGAGTGTTTGTTGACAGTT s panTro1.chr22 10163193 66 + 47338174 TCA---TCTGACTCATTGTGTGACACTGAAAAGCAATTGGTGACCTCCACTGAGTGTTTGTTGACAGTT s mm5.chr7 36844783 69 - 133051633 TCATCTTCTGACTCATTGTGTGGCACCGAAAAGCAGTTGGTGACTTCTACCGAGTGCTTGTCAACAGTT s rn3.chr1 166513050 69 + 268121971 TCATCTTCTGACTCATTGTGTGGCACTGAAAAGCAGTTGGTGACTTCTACCGAGTGCTTGTCAACAGTT s canFam1.chr21 19243651 66 - 53028000 ---TCTTCTGACTCATTGTGTGGCACTGAAAAGCAGTTAGTGACCTCCACTGAATGCTTGTCAACGGTT s galGal2.chr6 15462902 66 + 33893787 ---TCCTCGGACTCGTTGTGCGGGACGGAGAAGCAGTTAGTGACCTCCACCGAGTGCTTGTCCACGGTG s fr1.chrUn 297119147 66 + 349519338 ---TCTTCGGACTCGTTGTGGGGAACAGAAAAGCAGTTGGTGACCTCGATCGAGTGCTTGTCGATGGTA a score=5600.0 s hg17.chr13_random 36033 2 + 186858 CC s panTro1.chr22 10163259 2 + 47338174 CC s mm5.chr7 36847790 2 - 133051633 CC s rn3.chr1 166518052 2 + 268121971 CC s canFam1.chr21 19243717 2 - 53028000 CC s galGal2.chr6 15462968 2 + 33893787 CC s fr1.chrUn 297119213 2 + 349519338 CC s danRer1.chr1 5360266 2 + 40858791 CC a score=-31.0 s hg17.chr13_random 36035 1 + 186858 C s danRer1.chr1 5360268 1 + 40858791 T a score=1500.0 s hg17.chr13_random 36035 1 + 186858 C s panTro1.chr22 10163261 1 + 47338174 C s mm5.chr7 36847792 1 - 133051633 C s rn3.chr1 166518054 1 + 268121971 C s canFam1.chr3 61517648 1 - 95079643 C s galGal2.chr6 15463044 1 + 33893787 C a score=-31.0 s hg17.chr13_random 36035 1 + 186858 C s fr1.chrUn 297119215 1 + 349519338 T a score=127972.0 s hg17.chr13_random 36036 123 + 186858 AACA-GGGTCCCGATAACTCGGGCAGCACCCTTGTTGCGTCTCTCATAGCTGTCCACAGT-GGAGGCCAAAAGGA-CTGGGTGCAGCCTGACCACACGGCCAC-------------CAGGGAAGGGCCCTGG--AAGAGCA s panTro1.chr22 10163262 124 + 47338174 AACAGGGGTCCCGATAACTCGGGCAGCACCCTTGTTGCATCTCTCGTAGCTGTCCACAGT-GGAGGCCAAAATGA-CTGGGTGCAGCCTGACCACACGGCCAC-------------CAGGGAAGGGCCCTAG--AAGAGCA s mm5.chr7 36847793 123 - 133051633 AACA-GGGTTCCAATAACTCGGGCAGCTCCCTCGTTGCGGCGTTCGTAGCTGTCCACGAT-CGAGGCCAAAATGA-CGGGGTGTAGCCTGACCACGCGGCCGC-------------CCGGGAAAGGCCCCGG--GAGGGCG s rn3.chr1 166518055 123 + 268121971 AGCA-GGGTTCCGATAACTCGGGCAGCTCCCTCGTTGCGGCGTTCATAGCTGTCCACGAT-CGAGGCCAAAATGA-CTGGATGTAGCCTGACCACGCGGCCGC-------------CAGGAAAAGGCCCCGG--GAGGGCC s canFam1.chr3 61517649 121 - 95079643 AGCA-GGGTCCTAATAA--CGGGCAGCACCCTCGTTGCA----TGGTGGCTGTCCATGATGGGAGGCCAAAATGGCCCAAGTGCAGCCAGACCACACAGCTGC-------------AGGGGGAAGGGATAGGCAAGGGGCA s galGal2.chr6 15463045 121 + 33893787 AGCA-GCGTCCCGATGACCCGCGCCGCGCCCTCGTTGCGCCGCTCGAAGCTGTCCACGAT-GGAGGCGAGCACGA-CCGGGTGCAGCCGCACCACGCGGCCGC-------------CGGGGAAGGGACCCGA--GAGCg-- s fr1.chrUn 297119503 134 + 349519338 AGCA-GAGTCCCGATCACACGACTGGCTCCCTCATTTCTGCGCTCGTAAGAGTCGCAGAT-AGAAGAAAGAACAA-CTGGGTGAATTTTCACGACAGGTCCGTACACCGACATG--TTGGAAAAGGGCTCCA--CAGCGCC s danRer1.chr1 5360269 136 + 40858791 AATA-ATGTCCCGATCACGCGACTCGCTCCTTCATTCCTGCGCTCGTATGAGTCCACAAT-CGAAGCCAAAACCA-CCGGGTGGATTTTCACGACCGGGCCGTGCACCGCCATGATTTCGAAGAGGAAGTAA--AAGATGA a score=4814.0 s hg17.chr13_random 36159 37 + 186858 GG---ACCAG---GCAGAGTGGGTGCTGGGGTCTGCACTGGAG s panTro1.chr22 10163386 37 + 47338174 GG---ACCAG---GCAGAGCGGGTGCTGGGGTCTGCGCTAGAG s mm5.chr7 36847916 37 - 133051633 GG---CCCGG---GCTGCGAAGGCGCCGGCGTCTGCGCTGGGG s rn3.chr1 166518178 37 + 268121971 GG---CCCGG---GCTGCGAGGGCGCCGGCGTCTGCGCAGGGG s canFam1.chr3 61517770 39 - 95079643 AGGATGCCTG---GGAGAGCAGGAG-TGGGGCCTAGACCAGAG s fr1.chrUn 297119637 39 + 349519338 -G---CCTCGAGCGCCGCCTAGAGGCCGGCGGGTGAACAGCAG s danRer1.chr1 5360405 33 + 40858791 ----TGATAA---ACAGAGAAGAAG--AGCGCGTCAGTGGGA- a score=6101.0 s hg17.chr13_random 36196 13 + 186858 CTTGTGCTGAGGC s panTro1.chr22 10163423 13 + 47338174 CTTGTGCTGAGGC s mm5.chr7 36847953 13 - 133051633 CTGGCGCGGAGGC s rn3.chr1 166518215 13 + 268121971 CTGGCGTGGAGGT s fr1.chrUn 297119676 13 + 349519338 CCATCGCCCGGGC s danRer1.chr1 5360438 13 + 40858791 TTCGCGCTGCCGC a score=3029.0 s hg17.chr13_random 36209 11 + 186858 CAGGGTCTGGC--- s panTro1.chr22 10163436 11 + 47338174 CAGGGTCTGGC--- s mm5.chr7 36847966 11 - 133051633 TGGGGTCTGGC--- s rn3.chr1 166518228 11 + 268121971 TGAGGTCTGGC--- s danRer1.chr1 5360451 11 + 40858791 ---CCCCTAGCGGA a score=1943.0 s hg17.chr13_random 36220 12 + 186858 TTTAGATGACAg s panTro1.chr22 10163447 12 + 47338174 TTTAGATGACAG s mm5.chr7 36847977 12 - 133051633 CCGGGGCTGCAG s danRer1.chr1 5360462 12 + 40858791 TGTAGGTGGCTG a score=300.0 s hg17.chr13_random 36232 1 + 186858 g s panTro1.chr22 10163459 1 + 47338174 G s mm5.chr7 36847989 1 - 133051633 G a score=58583.0 s hg17.chr13_random 36233 662 + 186858 tttcattaagtggaagctgaaataccatttggggatatttagttcttcttgaaactaacggtaaagaaaacagcagacctattaacaggtaattgatctagagatagccaaggtgaaattgggtttctctattcagtaggggcagggaggactatgtgtgaaacacaggaTTATCTCAGTCATTCCATGTGTGATAGTACATGAAAGAGATGAGCAGTTGTAGTGCTGTTCACTGTGCAAAAGTATCCCTTCTTCCTAACGTGGGAGGGCTGCTTTTGCAAATATGTCTGTGCTATTTCTCACTGGTCCTGCCTCTTCTGTTCTTGGAATCAAACTCAGTCCATGACAGATCCCACTACTAGCTGAATTTCTTTATTAGACTT-TCACAAATGAAATTTTGTATTAGCAACTCAGGGGATTTCTTTAATTTTGCAAAAGTATGTCATCCTAATTTATTATTTTTTCCCTAAGATCTGGCAATGAGCATCGGTTCTCCGCTTCCTTTCTTACCCTGCTTACTCACAGCTGCTTCAGGTGACCTCCTTTTTAGGTTCAGAGTTATGGCTGACTTCTGCTTTAATCAAAACGAATGTATTTTGGTTTCTCATTTTGTTTATTGCTTCTATCTTCAAATTAGAAATCCTAGAGCTCATTAGATTTAC s panTro1.chr22 10163460 663 + 47338174 TTTCATTAAGTGGAAACTGAAATACCATTCAGGGATATTTAGTTCTTCTTGAAACTAACGGTAAAGAAAACAGCAGACCTATTAACAGGTAATTGATCTAGAGATAGCCAAGGTGAAATTGGGTTTCTCTATTCATTAGGGGCAGGGAGGACTATGTGTGGAACACAGGATTATCTCAGTCATTCCATGTGTGATAGTACATGAAAGAGATGAGCAGTTGTAGTGCTGTTCACTGTGCAAAAGTATCCCTTCTTCCTAACGTGGGAGGGCTGCTTTTGCAAATATGTCTGTGCTATTTCTCACTGGTCCTGCTTCTTCTGATCTTGGAATCAAACTCAGTCCACGACAGATCCCACTACTAGCTGAATTTCTTTATTAGTCCTATCACAAATGAAATTTTGTATTAGCACCTCAGGGGATTTCTTTAATTTTGCAAAAGTATGTCATCCTAATTTATTATTTTTTTCCTAAGATCTGGCAATGAGCATCGGTTCTCTGCTTCCTATCTTACCCTGCTCACTCACAGCTGCTTCAGGTGACCTCCTTTTTAGGTTCAGAGTTATGGCTGACCTCTGCTTTAATCAAAACAAATGTATATTGGTTTCTCATTTTGTTTATTCCCTCTGTCTTCAAATTAGAAATCCCAGAGCTCATCAGATTTAC a score=185835.0 s hg17.chr13_random 36895 2064 + 186858 ttttatgtttatttttgaaagagcatcctgctctgtcacccaggctggaatgcagtggtacaatgactgctcattgcggccttgacctcctgggctcaagtgattctcctgcctcagcctcccgagtagctgggattacaggcacctgccaccacacctggctaatgtttgtatttttagtagagacagggtttcaccatgttggccagctggtctcaaactcctgatctcaggtgatctgcccaccttgacctcccaaagtgctgggattacaggtgtgagccaccatgcccagccGatttttatgaccatgaatggggacagatttcttaaacagatcacaaaaagccatagttttaagggaataaattgataaattagactatattcaaattaagaatttctgtttattaagagacaccactaagaaagtgacaagacaagttgcagagtggaaacagatctatgaacacatagaactgacagagggctcacatcaacaatatgtaaagagctcttaaaaatcactaagagaaagaacaatgggtaaaacacttaaa-catgtaatttataaaagcaaaacttgaatgtgttc-agctttcttaatattcatgtaaatgcaaattaacatcacaacaggataacatatcctccaaaacggctaaaatgtaaaagatagaacaccaaatgttggagagaatctggagcaacaagaactctcatcactgctggaggggacactgtgtttggcattgaataaaggttctagaaaggagcacatttaggactcaggtatttcactcttaggataacagaaacgcatgcacatctgcatcaaaagacatctatggaaatgtgtgtggcatcattctctgtcattggaaaaatatcttgaaacaaaacccaaatgtGACTTCTGTTTTCCagcttggaagctgtcactcctgtcctcacaacaacaacaaaaaacaccttgaacaaactgaaaattaacaacttttcttagatccatcagagacttgaggttaacagggcaaaccgttatcccc-caaatttgagaggcagtgagtcccagcctaacaggatcggaggctggccactgaagccagaaccacggtgggaagacttacatgtaaacaacaaatcgctggaggctccatgcacataaacttgggaattaagaattaagggagcccagtcttagggg-gccctacac-tttcatgaacctccgagagctctgccagatgctcttatgcacatcagagaaaaattccctcctgcttcccacagggaaggggaaaagtaactactttgaaatacgccctgggtgttccgttctccttagcaaaagcctgccccagggaaactatttcacaagagtctaaccaccttgggctttagcagggcctaacACATGTTAgaataagaataaaaattgcatcaaacttttcttcagaacccatgcaagcaagCaagaaaattccaccaacctaaaattctgtattctgcaaaattatctttccaaagtgaagaa----aaagactttctcagagaaacacaaatttgctgtcagtagatctgtcaaaatgttaaaagaagttatccagagagaagaaaatgatataggctaaaaacttggaactacataaagaaaaaaggttttagagaaggaagaaAGGGGCTTCCTGCCTCCCTCCTCCATGGGGCACTGGTGCTATGCCCAGCACCCAGATGCCCCTACCCAATGCTGAATAAGAACACAGAGCACCGtgaatggctggctctaaaaggaaaagtggaagacttgtgttctcaacccacagctgctactgctacatttaaagacactgcagtgaacattgtaagttctctggctcatggagggaggaatctattccaaagactctgagaaaaactgtaaattaaacacaaatatggtggaagctggttcctgagctttattgatgttaataatgcaccttattggccaggcacagtggctcatgactgtgatcccagcactttgggaggccaaggtgggaggatcacaaggtcagaagatcgagt s panTro1.chr22_random 10850572 2068 - 11555934 ttttatgtttatttttgaaagagcatcctgctctgtcacccaggctggaatgcagtggtacaatgactgctcattgcggccttgacctcctgggctcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcacctgccaccacacctggctaatgtttgtatttttagtagagacagggtttcaccatgttggccagctggtctcgaactcctgatctcaggtgatctgcccaccttgacctcccaaagtgctgggattacaggtgtgagccaccgtgcccagccGatttttatgaccatgaatggggacagatttcttaaacagatcacaatgagccatagttttaagggaataaattgataaattagactatattcaaattaagaatttctgtttattaagagacaccactaagaaagtgacaagacaagttgcagagtggaaacagatctatgaacacatagaactgacagagggctcacatcaacaatatgtaaacagctcttaaaaatcactaagagaaagaacaatgggtaaaacacttaaagcgtgtaatttataaaagcaaaacttgaatgtgttctagct---ttaatattcatgtaaatgcaaattaacatcacaacaggataacacatcctccaaaacggctaaaatgtaaaagatagaacaccaagtgttggagagaatctggagcaacaagaactctcatcactgctggaggggatactgtgtttggcattgaataaaggttctagaaaggagcacatttaggactcaggtatttcactcttaggataacagaaacgcatgcacatctgcatcaaaagacatctatggaaacgtgtgtggcatcattctctgtcattggaaaaatatcttgaaacaaaacccaaatgtgacttctgttttccagcttggaagctgtcactcctgtcctcacaacaacaacaaaaaacaccttgaacaaactgaaaatt-acaacttttcttagatccgtcagagacttgaggttaacagggcaaaccgttatcccctcaaattggagaggcagtgagtcccagcctaacaggatcggaggctggccactggagccagaaccacggtgggaagacttacatgtaaacaacaaatcgctggaggctccatgcacgtaaacttgagaattaggagttaagggagcccagtcttaggggccccctacacttttcatgaacctccaagagctctgccagacgctcttatgcacatcagagaaaaattccctcctgcttcccacagggaaggggaaaagtaactactttgaaatatgccctgggtgttccgttctccttagcaaaagcctgccccagggaaaccatttcacaagagtctaaccaccttgggctttagcagggcctaacACATGTTAgaataagaataaaaattgcatcaaacttttcttcagaacccatgcaagcaagCaagaaaattccaccaaactaaaattctgtgtcctgcaaaattatctttgcaaagtgaagaaaaataaagactttctcagacaaacacaaatttgctgtcagtagatctgtc-aaatattaaaagaagttatccagagagaagaaaatgatataggctaaaaacttggagctacataaagaaaaaaggttttagagaaggaagaaAGGGGCTTCCTGCCTCCCTCCTCCATGGGGCACTGGTGCTATGCCCAGCACCCAGATGCCCCTACCCAATGCTGAATAAGAACACAGAGCACCGtgaatggctggctctaaaaggaaaagtggaagacttgtgttctcaacccacagctgctactgctacatttaaagacactgcagtgaacatggtaagttctctggctcatggagggaggaatctattccaaagactctgagaaaaactgtaaattaaacaaaaatatggtgaaagctggttcctgagctttattgatgttaataatgcaccttattggccaggcccagtggctcatgactgtgatcccagcactttgggaggccaatgtgggaggatcacaaggtcagaagatcgagt a score=151235.0 s hg17.chr13_random 38959 2045 + 186858 ccagcctgaccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggtgtggtggcacgtgcctgtaatcccagggactcaggaagctgaggcaggagaatcgcttgaacccggcaggtggaggttgctgtgagctgagatggcaccactccactacagcctggtgaca--gaggaagactacctctcaaaaaacaaacaaacaaacaaaaaacaaaaacaaaaaaacaaaaaactggtcacct---tttcaccatatacaaaaattaactcaggttggattaaagatttaaatttaagacctcaaactacaataatccaagaagaaaaacttcaaaagtaccattctggatatgggctatgggaaataattcatgactaagtcttcaaaagaaattgcaacaaaagcaaaagttgacaaatgggacctaattaaactaaagagctgccacacagcaaaggaaaccatcagcagagtaa----acaacctacagaatgggggaaattattcacaaactatgcatccaacaaaggtctaatatttagaatctataaggaacataattcaacaagcaaaacacaaccccatttaaaaaggggcaaaagacatagacacttctcagaaggagacatacatgcagccaacaaccatgaaaaaaatgctcatcatcactaatcatgagagaaatgcaaatcaaaaccacaatgagatattatctcacaccagtcagaatggctatttttaaaaagtcaaaaaaaaaaaatagcagatactggcaaggataaggagaaaagggaatgcttatacacctttggtgggaatgtaagttagttcagccactgtggaaagcaatttggagatttctcaaagatcataaaacagaactaacattcaacccagcagtctcattaccgaatatgtatccaaaagaaaacaaatcattccaccaaaaagacatatgcacttgtatgtttattgcaacattattcacattagcaaagacatgggatcaacctaggtgcccatcaacagtggactggataaaaatgtggtacatacagaccattgaatactatgcagccacaaaaaagaataaaattatgttctatgagggaaaatggatagagctggaatccaggaagtgaactaatgcagtaaaagaaaacaaacgcctcatgttcctataagtaggagctaaattctgagtacccatggatatgaagatggtgacaatagacactagggactgctaggagggggagggaggaaggaaaaggttgaaaaactgctgagtaccatgttcagtacctgggggttgggatcat-tcacaccccaaacctcagcaccacacaatacacccaggaaaa-aacctgcacgtgtacaccctgaatctaacataaaagttgaaaaagaaaaaaCAGAATGGAATCTCTGTTTATTCTCA----ACGTATCAGTTGTGCCACTCTTCAATTTGAAACTCTCACTATTGGCTATATttgggggtgccctatttcccatctcataacttattttaag-aaccacagcaaaataa-tgtgtgggcttggcattcagtttttgaaacaaaacactgagccttcaatgaccttcctgtacatgtaaaagcacacctgtctgcatggcagcagttggacctcacaatgtggattgtgccttcaccctg-gaatgttt---atgccctatcgccatggtgatgggattagggatctcctgcccttggtcctaagtgccactgtctgtgatgagtttttcaaaggtcagagcagattgaacctttgtggtttcattttccctgattttgatttttcttatgggga---acctgtgttgctgcattcaaggtatgttcatactggcctgtcaaatgcgaactcttcaaattactagttaatgctttcaaaatatgttatttaaaaaattatcctctgtattttccatatgcagttataaatatgtttcatggctatgttttattcctcaatttatatgtttgattattgtaccaagcagagtacctttgaaatttttctt s panTro1.chr23 27865149 2022 - 50034486 ccagcctggccaagatggtgaaaacccgtctctactaaaattacaaaaattagctggacatggtggaacgtgcctgtaatcccagctactcgggaagctgaggcaggagaatcacttgaacccgggaagcggaggttgccgtgagtcgaaatggc--cactacgctccagcctgg---caatgagcaagactccctctcaaaaaaaaaa-----------------aaaagaaaaaagaaaaaaactggacacctatttttcaccatatacaaaaatttacgcaggttggattaaagatttaaatttaagacctcaaactacaataatcctggaagaaaaacttcagaagtaccattcttgacatggcctatgggaaataattcatgactaagtctttaaaagaaattgcaacaaaac------ttggcaagtgagacctaattaaactaaagagctgccacatagcaaaggagaccatcagcagagtaagcagacaacctacaggatggggggaattattcacaaactatgcgtacaacaaaggtctaatatccagaatctataaggaacttaattccacaagcaaaaaacggccccatttaaaaaggggcaaa-----taaacacttctcaaaagaagacatacatgcagccaacaaacgtgaaaaaa-tgctcatcatcactaatcatgagagaaatgcaaatcaaaaccacaatgagatattatctcacaccagtcagaaagactattttttaaaagt---aaaaaaaaaatagcagatactggcaaggataaggagaaaacgaaatgcttatacactgttggtgggaatgtaagttagttcagccactgtggaaagcagtttggagattactcaaagaacataaaacagaactaacattcagcccagcaatcccattactgagtatgtatccaaaagaaaacaaatcattccaccaaaaagacatatgcactcgtatgtttattgcaacactattcacgatagcaaagacatgggatcaacctaggtgcctgtcaacagtggactggataaaaatgtggtacatatagaccatggaatactatgcagctacaaaa--gaatgaaattatgttctttgcgggaaaatggctagagctagaagccactaagtgaactaatgtagtaacagaaaacaaacgcctcatgttcttataagtaggtgctaaacgctgagtacccatggacatgaagatggtgacaatagacactagg-actgctaagagagggagggaggaaggaaaaggttgaaaaactgccgagtaccatgttcagtacctgggtgttgagatcatgtcataccccaaacctcagcaccacacaatatacccaggtaactaacctgcacgtgtacaccctgaatctaaaataaaagttgaaaaagaaaaaaAAGAAGGGAATCTCTGCTTGTTTTCAGAATA---ATCAGTTGTGCCCCTCTTCAGTTTGAAATTCTCACTATTGGCTATATGtagggctaccctatttcccatctcataacttattttaagaaaacacagaataataagtgtgtaggcttgggattcagtttttgaaataaaacactta-tcttcaatgaccttcctgtacatgtaaaagcacacctgtctgcatggcagcagttggacctcacaatgtggattgtgccttcaccctgtgaatgtctgtgatgccccatcaccacggtgatggaattagggatctcctgccctgagtcttaagtgccactgtctgtgctgagtttttcgaaggtcagagcagattgaacctttgtgctttcatttttcctgattttgatttttcttatggggatccactt---ttcctgcattcgaggtatgttcatactggcctgtcaaatgctgtcttttcaaattactagttaatactttcaaaatatgttatttaaaaaattatcctctgtattttccatatgcagttataaataagttttgtggttatgttttattcctcattttatatatttgattcttgtatcaagcagggtgcctttgaactttttctt a score=35627.0 s hg17.chr13_random 41004 686 + 186858 catttaaaaaatatgtatcttggctaag--gcctgtaatcccagcactttgggaggccaaggcaagaggatcacaaggtgagaagatcaagaccatcctggccaatacagtgaaaccctgtctctactaaaaatacaaaaaattagccagtcatggtggcagctggtgtactcccagtgtggtgtagtcccagctacctgggaggctgaggcaggactatcgcttgaacccgtgaggcagaggttgcattgagccaagatggcgccattgcactccagcctgtgcaacagaacaagac----tcTAAAACAAAATtatatatatat----------------gtaatatataat-------atatataatatgtcataatatatg---taatatatattatatgtcatat---atatgtaatatatattatatgtcata------atataatatatgtaa--tatatattatgtcatactatatattatatattatatattatatatcgtaaataatatatataat------tatatacaat----------tatatataattatataattacatatataattttatatattatttata----ataat-tat------atctatatcattatatatattacatata-attatatattattatttattatatataa---------------tatattatatataatataAGCATTCAGGATGTAAAAGGAAATtatatatgtgttatatatgtt---------atatatattatat----tgtatg s panTro1.chr22_random 10854690 745 - 11555934 catttaaaaaatatggatcttggctcaggcgcctgtaatcccagcaatttgggaggccaaagcacgaggatcacaaggtgaggagatcaagaccatcccggccaatacagtgaaaccctgtctctactaatactacaaaaaattagccaggcgtggtggcagctggtgcagtccaagtgtggtgtagtcccagctacctgggaggctgaggcaggacaatcgcttgaacccgtgaggcaaagtttgcagtgagccaacatggcgccattgcactccagcctgtgaaacagaacaaaactctgtctaaaa-aaaaGtatatatatataaaatatatgatatacgtaatatataatatatatcatatataatatgtcataatatatgatatatcatatattatatgtcatattacatat-ttatatataatatatgacatatattatatataatatatatgatgtatatattatat-ataatatatatgacatat--tatattatatg----aaat-atatatataatttattctatataaaatgttataaatatatatataa-tatataat---atatatgatattatatattatatatactatataatgtatatgataatatata-----atatatattacatatatgtcatatataa-----tatgatatataatatgtgatatacgattatattatatataatata--tatttcgtatgta----------atatatg----atatatattacatataagatatatattatatattatgtatg a score=58892.0 s hg17.chr13_random 43566 816 + 186858 tttgaaacaaaacactgagccttcaatgaccttcctgtacatgtaaaagcacacctgtctgcatggcagcagttggacctcacaatgtggattgtgccttcaccctggaatgtttatgccctatcaccatggtgatgggattagggatctcctgcccttggtcctaagtgccactgtctgtgctgagtttttcaaaggtcagagcagattgaacctt-gtagtttcattttccctgatttttatttttcttatggggaacctgtgttactgcattcaaggtatgttcatactggcctgtcaaatgcgatcttttcaaattactagtta-cgtctttcaaaatattttatttaaaaatttatcctctgtattttccatatgcagttataaatatgtttcatggttatgttttattcctcaatttgtatatttgattattgtaccaagcagagtacctttgaaatttttcttcatttaaaaaatgtgtatcttTTctcaggcctgtaatcccagctctttgggaggccatggcaagaggatcacaaggtgaggagatcaagaccatcctggccaatacactgaaaccctgtctctactaaaaatagaaataattagccaggcatggtggcagcttttgtaatcccagTGTGAATTGGGATTCAGTTTATTCCCAAATTCCCAAATtatatatatatatgtattt-------tatatat--------------ataattgtatat-----------------------------------ataattatataatata-----------------------taat-atag-------atatataatatatataatatat--------tat--------ttatatattatatatattgtata----atatatattatacatat-----ataat-----tat s panTro1.chr23 31065938 934 - 50034486 tttgaaacaaaacactgagccttcaatgaccttcctgtacatgtaaaagcacacctgtctgcatggcagcagttggacctcacagtgtggattgtgccttcaccctggaatgtttatgccctatcgccatggtgatgggattagggatctcctgccgtgggtcctaagtgccactgtctgtgctgagtttttcaaaggtcagagcagattgtacctttgtggtttcattttccctgattttgatttttcttatggggaacctgtgttgctgcattcaaggtatgttcatactggcctgtcaaatgcgatcttttcaaattcctagttaatgt-tttcaaaatatgttatttaaaaaattatcctctgtgttttccatatgcagttatatatatgtttcatggttctgttttattcctcaatttatatatttgattattataccaagcagagtacctttgaaatttttcttcatttataaaatatgtatcCtggctcaggcgtgtaatcccatcactttgggaggccaaggcaagaggatcacaagttgaggagatcaagaccattctgaccaatacagtgaaaccctgtctctactaaaaatacaaaaaattagccaggcatggtggcagCTGGTGGAGACCCAGTGTGAATTGGGATTCAGTTTATTCACAAATTCCCAAATTTtatatatatatatatatatataattatatatttaaatatatttaaataattatatatttaaatatatttaattatatattcaattatatattataattatataatataattatattaataaattatatatttaattataattatattatatataatatatattatatatattatatatataaaatgtattatatattatacatattatatatgtaatatgtattatatatattatatataatgtatatat a score=573.0 s hg17.chr13_random 44382 11 + 186858 atttataatat s panTro1.chr23 27867172 11 - 50034486 atttaaaaaat a score=16988.0 s hg17.chr13_random 44393 201 + 186858 atgtataattTCCTTTTACATCCTGCATCCTTCAACGTTCCATCCCCCACCCCACAGATTAA-TTATTCCCTAG-GGGAGAATATGGCAAAGTCTATTTTAATTCAGTTTTTAACCTAA-TTAAGAACCTATG---AAATCATTACTTTCCAAAACTTTGGAACAAAGCCACAGTAGTATGGATGGGTTGGAGGCTTTTCACACCAT s panTro1.chr23 27867183 196 - 50034486 atgtatcATTTCCTTTTACATCCTGCACCCTTCAATGCTCC------CGCCCCA--AATTAAGTTATTCCCTTGAGGGAGAATATGGCAAAGTCTATTTTAATGTAGTTTTTAACCTAAATTAAGAACCTATG---AAATCATTACTTTCAAAAAGTTTGGAGAAAAGCCACAGTAGTACAGATGGGTTTGAGGCTTTTCACACAAT s canFam1.chr26 20770603 181 - 41009621 ATATATTACTTCCTATTATATCCTGCACCCCTCACTTGTCA----------CCA----CTATGTCGT--CATAGGCAGAAAATGTGACAATGTCTATTTTAAGTT-TTTTTAAACCT---CCAAAATCATATTTTCAAATTATT-CATTCCAGACATTTATTGTGAATCCAGAATGGT-----TGATATGGAGGGTTGTCATTTTTA a score=-1009.0 s hg17.chr13_random 44594 3 + 186858 ---AAA s panTro1.chr23 27867379 3 - 50034486 ---GAA s canFam1.chr26 20771181 3 - 41009621 cTC--- a score=70362.0 s hg17.chr13_random 44597 684 + 186858 ATGTACC--TATCTTTG-TTTTTAACATGTTTTTCCCTTCCTCTCTTCTTTTTTTG-TGAAATGTGTATTTACTTTAATAAATTTGTAGTAAGTCATTTCCATTCA--CATATTAATTTT--TT----AAA-GTAATAAGAACGTGTATTGTCTGCGTGTGAAAT---------AAAACTCACATTTATTTTTATGCTTTTGGAGTTATCCAAAATCA-------TGGAATTGTCAATCACAGTCAATCACCCAACCTACTCACCTTTCCAGTGTAATCTTAGTCAAAT--------TTTTTTTT--GTT-ATCCAATGAGATG-CAGTATTTCAACTC--------AGAAAGATAAATAG--AATTAATTGGTAGA------GACTATTAACTAAGAACATACAGTTTT-------ATTTATACTCAGAAGCAAGTAGATTATGTACATATAT---ATGAAGATTAAAAT-------TAAAAGGATA-ATTGTGTAAATTTGCCTGTAGA----GAGCTTTGAAATC---CTGTTTACTTGTTAATGCTGTTTTGATGTATTGTGTGACTTTGTTCTCCCGACCCATCATCCAGAGCTCTCTGCAG-----GAGCTAAGTGCTCATCAGTTCCATGAC-TTGGCAACTGTCTAAG--------------TTTAGAGGCACTTGTATTTGT-----TAGTAA---ATAAGGCAAGATGATATTGTTTCACAGGTTTTAGTGC-AGAAGACTGAAT-AGATAA-GCTGCTCCACCCAGTACACTGGTGTTCATTTCAT s panTro1.chr23 27867382 682 - 50034486 ATGTACC--TATCTTTG-TTTTTGACATGTTTTTCC-TTCCTCTCTTCTTTTGTTG-TGAAATGTGTATTTAGTTTAATAAATTTGTAGTAAGTCATGTCCATTCA--CATATCAATTTT--------AAATGTAATAAGAATGCGTATTGTCTGTGTGTGAAAT---------AAAAAACACATTTATTTTTATGCTTTGGGAGTTATCCAAAATCA-------TAGAATTGTCAATTACAGTCAATCACCCAACCTACTCACCTTTCCAGAGTAGTCTTAGTCAAATATT----TTTTTTTTT--GTT-TCCCAATGAAATG-CAGTATTTCAACAC--------AGAAAGATAAATAG--AATGAATTGGTAGA------GACTGTTAACTAAGAACATACAGTTTT-------ATTTATACTCAGAAACAAATAGATCATGTACATATAT---ATGAAGATAAAAAT-------TAAAGGGATA-ATTGTGTAAGTTTGCATGTAGA----GAGCTTTGAAAAC---CTGTTTACTTGTTAATTCTGTTTTGATGTATTGTGTGACTTAGTTCTCCCGACCCATCATCCAGAGCTCTCTCCAG-----GAGCTAAGTGCTCATCAGTTCTGTGAG-TTGGAAA----CTAAG--------------TTTAGAGGCACTTGTATTTGT-----TAGTAA---ATAAGGCAACATGATATTCTTTCACAGGTTTTAGTGC-AGAAGACTGAAT-AGATAA-GCTGCTCCACCCAGTACACTGGTGTTCATTTCAT s rn3.chr8 60965381 649 + 129061546 ATGTACCTATATCTTTATTTTTTAACACAGTCTCTC------------TTTTCCCC-TGAAAGATGT----------ATAAATTCA--GGGAATTATGGACA------CGTTTTCATTTTTGTC----AAGGTTCACAGGGATTCGTACTTTCTGTAT-TTAATT---------AAAATGAAAACATA-TTTTATGT-----GAATCACTAGAAAGCA----------------AAATCGTAGTTCATTTTCCATCCCACT-GCCCTCCGGAGGTAAGCATTTTCAAGAATGGAAACTGCTTTT---------CCAATGAGAAATCACTGTTTCAGCAT-----GTAAAAAATGAGAATGA--GATCAATC-ATCAA------GACCGATGACTAAGAACATATGTATTTAATATTGATTTATATCCAGCAGTGAGTAAATACTGTACATGCATCCCGTAATGACCAAACT--------------------------AGTCTTCACATAGACTTGTAACACTGAAAAG---ATG--TAATAGCTAAACATGTTTTCACATGCCATGTGGCTTAGACCTCCTGAGCCTTCATTTTGAGCTCTTTCAAGAAGTTGAACTATATGCTTTCCATTTTGGTGCCAATAGCAA----ATACG----------------AGGAGGCCTTCGTATTTGT-----GAGGCACTGATAATGTAAGGTAGGGGACTTCCAGGGGTTACAGTGCTAGATGTCTTACT-ATAGAATGTTCATCCACCCGCCATTCTGGGCTGTATGTCAC s canFam1.chr26 20771184 759 - 41009621 AGGTATT--TGTCCTTT-TTAAAAATATGCCTTCCC-TATATATATACTCTTTATGCCAAAATGGGTATTGAGTTCAGT--ATTTG--GGGGGACATATTGCTTCATTCATATAAATAGTTGTCCAAAAGAGACTCTGAGAATATG-AGAGTCTATGTGTCAATTTGTGACCCCCAAACACACATTCACTTTTATACCTTGAGTGTTATCTGAAATTACATTTTACAGAGATATCAGTTATATACTACCACTCTTCCCATTCGGCATCCATGAGGTGTGAAGGTGAAAATACAATATTTTTCTCTCAGTTAACCCAATGAATAGCCAGTCTTTCAACATTCGGTGAAAGACAGGTAATTGGTTAATGAATTGACTTAATGGCTGATAGATAACCAAGTACATAGATTGTT-------AGTAATGCACAAAGAAAAATAGGTGATGTACATATGA---GTAGAGA--AATGTCATTTTATATATGTAGATATTGCATACATTTGTATATAGGATT-GTCATTTGAAAACAGAATGAGTCTTCATTAAAGTGGTTTTGATGTAATTTGTTTCTTAGTTCT---GACCTTTCTTCCAGATCTCTTTCCAAAAGTGAAACTATGTTTTTTTC-------TGAC-TTGCCAAGGGTCTCAGGAACTACTATTTTGTTTTGAGGCACTTATATTTGTGTGAGGAATAA---ATAATTCATGATGACATTGTTTGACATGTTTTAAAAC-GCAAGGCTTTATGATAGTG-ATCCTTCCTTCCTGTACGCAGGTATTCATCTCAT a score=0.0 s hg17.chr13_random 45281 6 + 186858 GGTCAT a score=172.0 s hg17.chr13_random 45281 2 + 186858 GG s panTro1.chr23 27868064 2 - 50034486 GG s rn3.chr8 60966030 2 + 129061546 TG a score=373.0 s hg17.chr13_random 45283 4 + 186858 TCAT s panTro1.chr23 27868066 4 - 50034486 TCAT a score=3280.0 s hg17.chr13_random 45287 20 + 186858 CTCATCTGTTAACCATGGAT s panTro1.chr23 27868070 20 - 50034486 CTCATATGTTGATCGTGgat s canFam1.chr26 20771943 20 - 41009621 TTGATATGCTGACCATGAAT a score=15067.0 s hg17.chr13_random 45307 178 + 186858 AAaaaacacttatcttcaatgatcttcctgtacatgtaaaaacacacctgtctacatggcagcagttggacctcacaacgtggattgtgccttcaccctggaatgtctatgatgccctatcgaccatggtgatgggattagggatctcttgccctttgctctgccactgtctgCACCA s panTro1.chr23 27868090 177 - 50034486 ataaaacacttatcttcaatgaccttcctgtatatgtaaaagcacacctgtctacatggcagcagttggacctcacaatgtggattgtgccttcaccctgaaatgtctatgatgccctattg-ccatggtgatgggattagggatcccttgccctttgctctgccactgtctgtgcCA a score=338.0 s hg17.chr13_random 45485 2 + 186858 GC s panTro1.chr23 27868267 2 - 50034486 GC s rn3.chr8 60966047 2 + 129061546 GT a score=5552.0 s hg17.chr13_random 45487 41 + 186858 CAGGCCACTGGGCCATTGTGGCAGATGGTGATGCCCTTTGT--- s panTro1.chr23 27868269 41 - 50034486 CAGGCCACTGGGTCGTTGTGGCAGATAGTGGTATCCTTTGT--- s rn3.chr8 60966049 41 + 129061546 TAGACAACTGGAAGATTGAAGAGAACAACACTGACTTTACT--- s canFam1.chr26 20771963 44 - 41009621 CAGGCAACTGGATCATTTTAGAGAAGAATCATGTGTATTTTTGG a score=-1168.0 s hg17.chr13_random 45528 7 + 186858 GT---GGAGC s rn3.chr8 60966090 8 + 129061546 TT--AGGAGT s canFam1.chr26 20772007 7 - 41009621 -TCAAGGA-- a score=117227.0 s hg17.chr13_random 45535 934 + 186858 GCACTGTGTGTGCGCTGAGGCAGACAC---AGTACTTTTGAC-AACTTTATCTGCTTCTTTCAAAACTGGGTCTGCATTATGATAAAGTGGTTGGTTTTAGGCCAAGCAggtgcatgtcat---agaacaatgacttgggagttcagaatcctgggcgtgaataagcctctgagccttattaagctgtgaaatctaaagcaagacatttccctgataattaagcctcaTGA-------------------------------gcact-----tatac-tgtacactt-----tacctacatcaaatcattcggccatcaccacagacaaatg----------------gcatgattgatttactatca----------------cctttt-----------------------actgg---gcagaaaaag----acagagatgaatgtgcccaagcttattagcccctcagcaaaagagccaagatgggaacccaagcatacagccccaatgctgaggctctgaactactGACCTGCCC-----TCAGCACTCAGCCTTGGGATCATGAGTCACTGTGCAAGGGAGTCCCAACATCTGCATGTATGTCTGGAATGATCTGAGCCTGTAGAGTTCCTACACACTGGCCA-CATTATAGGGTGGTGTCTGTGGTCACACAGCTCA-GGGCAGGTATTAGTACATGAATAGCTTAGCGGTGTCATAGTCTTT-ATGTGAAAGGCTCATAAAA----------GCCCAA----ATGCTTTTGAACTGGTTGCGGATTTT--GAGTTGGAGGA--ACACTTGGGACAACC-GGTCACATTCCT-TCAGTGCGCGGCCACTCCTCAGCACATATCCCAAAGCCGGTAAATAATGGGAAGACCCTGTACTGATGTTTGATGGTGTTATGAACTTCAAATGACCCCTATAGAAATGTTAAAAAAAAAAAAAGTCTGTGAGCTACACAACC--TGGGGAC--AAGACAAGAACACAAAATACCACTAAATAATGAGCCT--CATGTGTCACCCTGCTTGCAACTCCCTTG-GCAGCTGGTTTCAAGAG s panTro1.chr23 27868499 932 - 50034486 GCACTGAGTGTGCACTCAGGCAGACAC---AGCACTTTTGACGAACTTTATCTGCTTCTTTCAAAACTGGGTCTGAATTATGATAAAGTGGTTGGGTTTAGGCCAAGCAggtgtatttcat---agagcaatgggttgggagttcagaatcctggacttgaatgagtctctgagccttattaagctgtgaaatctaaagcaagacatttcactgataattaagcctcaTGA-------------------------------GCACT-----TATGC-TGTATActt-----tacctacatcgaatcattcagtcatcaccacagacatatg----------------gcatgattgatttactatca----------------tctttt-----------------------gctgg---gcagaaaaag----acggagatgaatgtgcccaagcttatgagcccctaagcaaaagagccaagatgggaacccaagcatagggccccaatgctgaggctctgaactactGACCTGCCC-----TCAGCACTCAGCCGTGGGATCATGAGTCACTGTGCAAGGGACTTCCAACATCTGCATGTATGTCCGGAATGATCTGAGCCTGCAGAGTTCCTACACACTAGCCA-CATTATAGCATGGTGTCCATGGTCACATAGCTCA-GGGCAGGTATTAGTACATGAATAACTTAGGTATGTCATAGTCTTT-ATGTGAAAGGCACATAAAA----------GTCCAA----ATGCTTTTGAACTGGTTGCGGATTTT--GAGTTGGAGAACAACACTTGGGACAACC-GATCACATTCTT-TCAGTGCTCGGCCACTCCTCAGCACATATCCCAAAGCTGATAAATAATGGGAAGACCCTTTATTGATATTTGATGGCATTATGAACTTCAAATGACCGCTAAAGAAATGTTAAAATAAA-----GTCTGTGAGCTACACAACC--TGGGGAC--AAGACAAGAACACAAAATACCACTTAATCATTAGTCT--CACGTATCACCCTGGTTGCAACTCCCTTG-ACAGCTGGTTTGAAGAG s rn3.chr8 60966100 948 + 129061546 ACACTGAGTGCATACTCAGGCA----------TTCCTGTTAG-ATGTTTAACTGACTCTGTCTATCCTGAGTCTGGATAAAATGAAAATGGCCACTTACATTCCAAGCAGGCATATGTCATAGAAGAACAATGGTTTAGAAATTTGGAATCCAAGGTCTGACTCAG------------ACTAAGCTGGGAGGACATCGGCAGTACATTTTCCACACAAATAACCTTCCTTATACCCTGTGTTCATTAACTCACACACCAATGGCACA-----GATACACACACCCTTGTCCCTATGTTCAGTAACTCACACACCCAACAGTGTAGACACACATGTCCTCGTCCTGAGTTCATAACTCACACACCAACAGCACAGACACACACATCCTTGTCTACACTTTATGTACACCCCAGGGCTGGTA-TCAAAGACAG----ATAGTGTTGAAAGTACCCAGACTCTTCTGTTCTTTGGTGGAAGAGCCAAGATGGGAGCCCAGAT-TGTGGTCCTGATGCTGATACTCTGAACTGTTGACCTGGCA------CATCATTCAGCTGTGAGGTCTCTAGTCACCGAGGAAGATGGT-CTATCATTTGTGCAACTGTCTTGATTTCTAACAGCCTTGAGAAATCCTATACAATATGCA-CCTCATGAGGTGGGACCCATGCTCACAAACCCCAGGGGCAGGTATTGCAGCATAAGTGTCAAAGTTA-ATCACACCAATT-GTGTGCAAAGCACATAAA--------------CAC----ATGGTTTTCCATGGTTCACCAA-------AACTGGGGG-------TTGGGGCA-----TGCATGTTTTG-GGAGTCCTGGATCAGCCCACA-CATCTGTCCTAAAGTCAGTCAGGATTGAGATGTCT-----------TTTAGTGAT------AACGGAAACTGACACT-------------------------ATATGCG---TGCACAACTCATGACAGT--GACACATAAAGACACACTGCCACTCCAGTGTTAACAC--AATGCATCAACGTCCTGGCATTTCTGATGTAGAGTTGGGTAAGTAAG s canFam1.chr26 20772014 943 - 41009621 CCCCAGAGAATGGATTCAGGAAGTCATTCATATATTTTTTTT-ATGCTT--CTGATTCTGTCAAAACTAAAT-TATGTTGAGGCAAAATGCTTATATTTAGGCAAAGCAGCTGTGTGTTAC---AAGGCAATGGTCTGggaactcagactcccaggtttgaatccagctctggaacttgtgaaattgtgagatatcagacaagatatataccctctaattaaccttcctga-------------------------------ccactttctatatac-tgcgtactt-tccatacatacatcaattcattcaatgctcatcacacacatatg----------------ggatggtttgttgactctc-----------------ccttct-----------------------cctcgagtgaagaaacagaggcacagagatg---------aggttcatgaactc-tgaattaaggagccaggatatgaacccagct-ggtagtcccaatgctcatgctct-aattactgagctgaactgtAGTGATTGCTCAACCATGGGATCATTGGTTACTGTGCAAAGGAGCTTTAGCATCTGTA----TGTCAGGAATTATGTGATCCAAGGGGAATCCCA-ACACTGTCTACCATTACGGGGTAGTCTCAGTGGTCAGATTGC-CA-GGGAAGCTCTTGAGCCATAAAAATACAGATCTTGACATGGTAATTAATATGAAAAGGAAATCCAAAGCACGGTCAGTTCAAAGCCAGGGTTCTGGTCAGTTCAAAGATTCTGAGAGTTTGGAGGCACCATTTAGGACACCCTGGTCAAACTCTTGTTAGTTTTGGGCTACTCCTCAGCATCTGACCTCAATCTGGTCAGAATTGGGGAATTTCTTT-----CATTTGATGGCATTGCCAGTATGAGTGAGCCCTCATAATACTG-------AAA-----TCCTGTGAG-TCTACCATT--GGGGCACTGAAAAGTAAGACTCAGAGTATCAGTTTATGGTTAGCTTGGTATTCACTATCCTCATTGCTATTCCTGT--ACAGCTGAGATAGAGAG a score=13379.0 s hg17.chr13_random 46469 155 + 186858 CCTCAGTGCTCACCAGGGCCCATCTCCCTGCTCTGCCCTCTCTCGCTGTGGGTTGCCTGGGCTGAACAT---GGGCAGCCCCTCAC-ACGATGACTGCAAACACAGG-----GCAAAGGAAGACTGAACGGAAAATGTATGGTTATAGTGGTTATTTTAAAATA s panTro1.chr23 27869431 159 - 50034486 CCTCAGTGCTCACCAGGGGCCATCTCCCCGCTCTGCCCTCTCTCCCTGTGGATTGCCTGGGCTGAACATACGGAGCAGCCCCTCACCAGGATGACTGCAAACAGAAG-----GCAAAGGAAGACTAAATGGAAAATGTATGGTTATAGTGGTTATTTTAAAATA s rn3.chr8 60967048 111 + 129061546 TCT-GGTGGTCAGTAAGGTCCAGATCCCCATT-------------------------TGGTCAGAAACT---GAACATCTATTCAC-ACAATGCACACAAATAGATGGCATAGCAAAAGAAGACCAGAGGAGAA-----------------------TAAAATA a score=40212.0 s hg17.chr13_random 46624 636 + 186858 TAAGTATTTCAGTATTTTCTAATCTTTAATTATT-ATTTTTA-----GGGGAGGtttttttttttttgagacagagtcttgc--------ccaggctggagtgcagtggcatgatctcagctcactgcaacctctgcctcctgtgttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggcacgtgccaccacgcctggcaaagtttttgtgtttttagtagagatggggtttcattctgttagccaggatggtctcaatcttctgtcctcatgatccacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccacacctggccTGAttttttatttt---ttatttttttgagatgaagtctc----tgtcacccaggctggagtgcagtggtgcaatctcagctcactgcaatctctgcctccaggttcaagggattctcctgcctcagcctcctgagtagctgggttt----------------------------ttttttttttttttttttttttttttttagttgagatggggtt--ttaccatgttggtcaggctggtctcgaactcctgacctcaaatgatccgcccacctccaccttccaaactgctgggattacaggtgtgagccactatgcctgac----tATTTTCATAACCAA s panTro1.chr23 27869590 674 - 50034486 TAAGCATTTCAGTATTTTTTAATCTTTAATAATTGATTTTTTTGGGTGGGGGGGCtttttttttt----ggcagagtcttgctctgttgcccaggctggagtgcactggcacaatctcggctcactgcaacctctgcttcctggactcaagcaattctcctccctcagcctcccaagtagctgggacaacaggcacatgccaccacgcctggctaattttttgtgtttttagtagagacgggatttcactgtgttagccaggatagtcttgatcttctgacctcatgatctgcccatgttggcttcccaaagtgctgggattacaggcgtgagccactgtgccctgccGGtttttttgttttgttttgtttttctgatatggagtctcactctgttgccctggctggagtgcagtggcacgatctcagctcactatagcctctgcctccaggttcgagggattctcctgcttcagcctcctgagtagctgggattacaggcacatgccaccatgcctggctaatttttttttttttttttt----------actggagacggggttcatta---tgttggtcaggctggtctcaaactcttgacttcaaattatccacctacctcaacctcccaaagtgctgggattacaggtgtgagccaccacacctggccGATTATTTTTATAACAAA a score=7444.0 s hg17.chr13_random 47260 91 + 186858 GAAAAGAAATAAGTACAATTAATG----CTGGTGCATGGTATTAAATCTA--GTTTTTAAAAAATTCACACATAAACAAG-GCAGAACCCTATACCCT s panTro1.chr23 27870264 89 - 50034486 GAAAATAAATACATATAATTAATG----CTGGTGCATGGAATTAAATCTA--GTTTTTAAAAAATTCACACATAAACAAG---AGAACCCCAGACCCT s rn3.chr8 60967343 98 + 129061546 GAAAGGATGAGTGTATGACTTATATTATCTTGTGCCTGCTACTAAGTCGACTGACCTATGACAATGAGTACACTATCAAATTTAGATTCCTATATGCT a score=0.0 s hg17.chr13_random 47351 2 + 186858 CC a score=-14.0 s hg17.chr13_random 47351 2 + 186858 CC s panTro1.chr23 27870353 2 - 50034486 CA a score=5340.0 s hg17.chr13_random 47353 48 + 186858 ATGATAAATGCA-------------------------------------GTAGCAGTGT--------ATGTGGGTCTGTGG----------AGGTTGAAAGGG s panTro1.chr23 19802119 48 + 50034486 ATGATAAATGCA-------------------------------------GTAGCAGTGT--------ATGTGGGTCTGTGG----------AGGTTGAAAGGG s rn3.chr8 60967441 103 + 129061546 ATGATAAATACAAACTGTGAGTGTGATGTGTGTATGTGTGAGCATGCATGCATGAGTGTGCACACAAGTGTGAGTTTGTGGGCATTAAAATGGGTTGAAAGAG a score=191.0 s hg17.chr13_random 47401 2 + 186858 AC s panTro1.chr23 19802167 2 + 50034486 AC a score=14417.0 s hg17.chr13_random 47403 117 + 186858 TTGGTAGATGTCAAGAAGGTAGTGGCAGTCTTGCTGGGCTTTTAAAGGGTCTGAAGAAGTGACAGGATGCTGTGGTTGAATCCTAGCATGTATTTTAGCATTTGT--TCATTTGGA----GTT s panTro1.chr23 19802169 117 + 50034486 TTGGTAGATGTCAAGAAGGTAGTGGCAGTCCTGCTGGGCTTTTAAAGGGTCTGAAGAAGTGACAGGATGCTGTGGTTGAATCCTAGCATGTATTTTAGCATTTGT--TCATTTGGA----GTT s rn3.chr8 60967648 118 + 129061546 TTGAAAGATAAATAGAAAGCAGTGGCAATTCTCTTGGTCTTTAGAATGACTGAAAACAGTAGA-----GCTCTCATTTAACCATACAACTTACTTTAGTGTTTTTACCCAGTTGGAGATGGGT a score=78940.0 s hg17.chr13_random 47520 624 + 186858 TGATTATTTCACGTTGCTTTCATTTGCCATTACCTGGAAAGCCAAGGGCTCTACTCTCATTTCCT-------TGCTCCTGTTTCTTTGCCTTCCTTGGTCCGTGAAG-AAGATGGTCCAGGAGAAGCTCATTC---CATGCTTGTTAACCAGGCACACCCCTAAGTTCCAGTCCCTGAGTCATTCATGAGTAGCA---CTGCCAATGAACTGACAGCCATGCTGTGTCCCTCCACATCCCCTAGGTGACTC----GAAGAATTCTTCCAAAAAGCGTGTGAAAAGG--GAGCCCTACTCTACTACCAAGGTAAAGCAGCCTGTCTTTGCCTAAGATGTAAATGTTGTTTT-CTTGGATCCTTTATTTTTCGGTTGATATCAGCTATGG-----GAAAATTATCCACTACATTATAGATGTTAG--ATAATATTTCCTTGGG--GATGGAGGAGGTG-----------TATTTTACCAACTGACACCTGATTCCAGAGGACG---------TGCAAAATTGGCAGTGTCAGATAATACACTGCGTGTTAAGGGATGTTTTCTTCAGGAACAAGCTTTCCACTTTAGATAAGA-ATTCTTCAATTGCTACTCAAAAATTACCTAGACAGAAACATTCTTCAAGAAAAGCTC---CTGTGCTTTCCTA---AGGGAACTCTACT s panTro1.chr23 19802286 625 + 50034486 TGATTATTTCACGTTGCTTTCATTTGCCATTACCTGGAAAGCCAAGGGCTGTACTCTTATTTCCT-------TGCTACTCTTTCTTTGCCTTCCTTGGTCCATGAAG-AAGATGGTCCAGGAGAAGCTCATTC---CATGCTTGTTAACCAGGCACACCCCTAAGTTCCAGTCCCTGAGTCATTCATGAGTAGCA---CTGCCAATGAACTGACAGCCGTGCTGTGTCCCTCCACATCCCCTAGGTGACTC----GAAGAAGCCTTCCAAAAAGCATGTGAAAAGG--GAGCCCTCCTCTACTACCAAGGTAAAGTAGCCTGTCTTTGCCTAAGATGTAAATGTTGTTTTTCTTGGATCCTTTATTTTTCAGTTGATATCAGCTATGG-----GAAAATTATCCACTACATTATAGATGTTAG--ATAATATTTCCTTGAG--GATGGAGGAGGTG-----------TATTTTACCAACTGACACCTGATTCCAGAGGACG---------TGCAAAATTGGCAGTGTCAGATAGTACACTGCGTGTTAAGGGATGTTTTCTTCAGGAACAAGCTTTCCACTTTAGATAAGA-ATTCTGCAATTGCTACTCAAAAATTACCTAGACAGAAACATTCTTCAAGAAAAGCTC---CTGTGCTTTCCTA---AGGGAACTCTACT s rn3.chr8 60967766 579 + 129061546 TGGTTGTTTCACACTGCTTTAGGTTCCCATTACTTAGAAGGTCAAAAACTCTCCCCCACTTTTCT---------------TCTATTCTCAGTCCTTTTCCCATCAAGCACAATGGTCCAGTGCTAGCCCAGTCATACTTGCTTATCAACTATAACCATTCTGAATCAAAGAGCTCTGGGTAATTCA-----AGCA---GTACC-ATGTTCTGACTGTTATTTTGTGTCTTCCTAGTTCTTCCAGTTGACTT-CCAGATAAAGGCCTCAAAAG-----GTGAGGAGGCAAAGTCAT---------CTAAGGTAAGATGATCATCCCAT---TAAGATAGAAAGGCTATGTT-CATAAAACTGTTGTTTCT-AATTGACAGCATATTTGAATAATAAAAATCAT---AGGCACTGTAGATATTAG----GGTATTCACTTAGGAAGAGGTAGGA------------------------AAGTCATCCCCGACTCATAAAGGTA---------TACCAGA-TGTCAGTTTCAGA--------TGTATTTTAGGAGGTCATTTCCTCTTGAGTAAATGTTTCTTTCTAGATGTGATGTTGTATAATGTTCAATCAAAAAGTA-----ACAGACATGTTATTCATGAAGAACTTGTATTTTGCATTCCC----TGGGAACTCTATT s canFam1.chr26 22003219 642 + 41009621 tGAACATTTCATGGTGACTTGA-CAGTCTTTCCCAGGAAGCCAAAAGGCTCTGTTCCTCATTTCTCTTCTGCTTCTCCCCTTTGTCTTCCTTCCTTCGTCCACCCAGGAGGATGACTCAGCAGCAGCCTAGTT---CACAGTTCTTAACTAACCAGCTCTGTGACTCTCCCTCCCTGCCCAAGTCG-----ACCACACCTGCC--TGAAT---AAGTCCCTATGTGTCCTCCTAGACCCCCCGGAGGGCCTGTCTGAGGAGCTTCCTCATGACACGGCAGAGGAAG--AGGCCCC-ATCTAATCCTAAGGTAAGGTCACCCATCTTTATCTGAGATGGATATGTCGCTTT-GTCGGTTTTTCTCATGTTTGACTCAAGTCCTCTATG------GAAAATC-----TGACAATGTATATTGTAGAGAGGATATGCAATTCTG--ATTGCAGGAGGGGTCTCGATTGTCTGTCTTAGCAACTGATGTGTGATCCTAGAGGGCACTCGAGGCCTTCTAGAGTGGCAGCATCA-ATTACAAACTGGATAATAGTGAGCATCTCACCGTGCAGCAATTTCTTGTCCATGGAAAACA-ATTTTGCAATTGCCAATCAAAATGGACCCG-AGACATTTATTCTCCAGGGAAAGGTG-----GTGCCTTTTGGCATAAGGACATTTGCT a score=105221.0 s hg17.chr13_random 48144 979 + 186858 CTAGAGTTGGGGCTTTTGACTTGAACCTTATTTCCAATCTTGGTTACCCAGAGTTTCCAAGTGAACAAAAGACCTGTGTGAGCCATCCATAGCATAGCCTGATTCTCAGAGTGTTTTCCT---TCTCTAATTACAGGTGACTTCAGGGAGCACATTCAATGGTACGTATTCTGGAATCACTCACTGGTTGTTAGAAAAGGATTCTACAGGAAAT----CTGGAGCTTAACTGCTGGCTTTTGTCTGGAGAGCCTCCATGATCCAAGATATCTTGTGGGAATGAGGATGTGGGGTATAGTAAAAGAAACTGGTTTTCCAGGTGACATACTCTTTTTATCTATTTATAGTTTCTGGGAACGTGTTCACATTAGGTTGTGTGTGGTTATGTGTGTATTAGGGC---GGGGGTGGGGTGAGGTGGTCTGTGTGCAAGTCTGCATGATTTGCTTGTGAATGTGTGTCTA-----TGTGTG-----------TTTTCCCTAGGAAAAAAATGTTGTGTTTACCC-AGCACAACTCTCAGTGCCATTTTTCTTAATTTAACAAGTCAGACCACATActtt-acttacattagtt----cacacctc-atcatcatcatg-cccata-tgttgtgagc-ttgtttattgagcccaca--tgccagatggagaaactaagccacataaataaatgtgccctggttcacTTGCTGCATAGTGAAGAGTCAA--AATGTTTACTCATATGGTGCTAATGTTGAAGGCCTGAACTAC-AACCTCTATTTATCAGCCAGTGAAGAGATCACTATTCACCATGCAAGGGAGTTCCAGCACCCTCTATGCCTG-----GAATTACCCACGCCTGCAGAGATCCCAAACGCCACCCCTCACATAAGAGAGCCTC-ATGATCTCATAATCC-AGGTAGCTA--------TGTAGACACCTTCCTGCAGGTGTCACATAGTCCTTTGTGTGAAACCAACATAGAAAGCCCATGTTTCTGATCAAATCACAGGTTCTGAAACACTAAGGGAGGC s panTro1.chr23 19802911 989 + 50034486 CTAGAGTTGGGGCTTTTGACTTGAACCTTATTTCCAATCTTGGTTACCCAGAGTTTCCAAGTGAACAAAAGACCTGTGTGAGCCATCCATAGCATAGCCTGATTCTCAGAGTGTTTTCCT---TCTCTAATTACAGGTGACTTCAGGGAGCACATTCAATGGTACGTATTCTGGAATCACTCACTGGTTGTTAGAAAAGGATTCTATAGGAAAT----CTGGAGCTTAACTGCTGGCTTTTGTCTGGAGAGCCTCCATGATCCAAGACATCTGGTGGGAATGAGGATGTGGGGTATAGTAAAGGAAACTGGTTTTCCAGGTGACATACTCTTTTTATCTATGTATAGTTTCTGGGAATGTGTTCACATTAGGTTGTGTGTGGGTATGTGTGTATTAGGGC---GGGGGTGGGGTGAGGTGGTCTGTGTGCACGTCTGCATGATTTGCTTGTGAATGTGTGTCTA-----TGTGTGG----------TTTCCCCCAGGAAAAAAATGTTGTGTTTACCCCAGCACAACTCTCAGTGCCATTTTTCTTAATTTAACAAATCAGACCACATACTTTTACTTACATTAGTT---TCACACCTCCATCATCATCATGGCCCATAATGTTGTGAGCCTTGTTTATTGAGCCCACACATGCCAGATGGAGAAACTAAGCCACATAAATAAATGTGCCCTGGTTCACTTGCTGCATAGTGAAGAGTCAA--AATGTTTACTCATACGGTGCTAATGTTGAAGGCCTGAACTAC-AACCTCTATTTATCAGCCAGTGAAGAGATCACTATTCACCATGCAAGGGAGTTCCAGCACCCTCTATGCCTG-----GAATTACCCATGCCTGCAGAGATCCCAAACGCCATCCCTCACATAAGAGAGCCTC-ATGATCTCATAATCC-AGGTAGCTA--------TGTAGACATCTTCCTGCAGCTGTCACATAGTCCTTAGTGTGAAACCAACATAGAAAGCCCATGTTTCTGATCAAATCACAGGTTCTGAAACACTAAGGGAGGC s canFam1.chr26 22003861 899 + 41009621 CCA---TTGTTACTTTGGG----------GTTCCCCGTC-TGGTTTTCTAGACTCACCCAGCGAACAAAAGCCCCGTGCAAGCAGTGTACAGTATGACCTGACTCTCACAACGTTTTCTCTTGTCCGTAACTGCAGGTGACCTCAAGACCCAGTGAAAATGGTACATGTTTTAGAATCATTTACTTACT----GAGGTCAACTCCATAAGAAAGGAAAGTGGGGCTTTCTTGTTGGTTTTGGTCTGAAAGGTCACC---CTTCCAGCTTCCTGCTGTGAATGAGG--------------AACAAGAACCAATTTTCCAAGTAAGGGAC--------------CATGG---CTGGTGCCACAGTCTCTTTAGGT--GGTGTGGTTCTGTGTGCCT--GGGCTTTAGGGGT-----------GTCTCTGTGCGCGTCTCTGTGGTGTGAATGTGAG-GTGTGCCCAATGCCTGTGGGGAAGAGCACATATTCCCCCAGT--GGATACGTCCCATTTACAC-ATCACAA--CTTGGTGTCACCC---------------------CTGCATActtt-gcatagattgtcttggtcacccctc-accacagt------------tgtgctgggcattggtt-ttcactccccaaccctcagaaggggaaactgaggtgcagagataaatg-acgcaagctaaggagctccctggggaagagccagcccatgatcccaggagtgtggccaatgct------ctgaactactGACCTGTGCTCATTA-CTTGCATAG-GGTCACTAGTCATTGAGTGAGGGGGTCCCAGCA---TCTGTGAACGAACGTGAGGTCCCAGAGTCTCCAGAGCTCCCAGGCACTGCCGCCGTTAGAAGGCGGCCTCTGTGGTCACGCAGCCCTGGGCAGCCACAAGTGCGTGTAGCCCACTT----------TGGCATGGTCAGTGGCGTGAGCACAG-GTGAAAGCCCTGTGCCTCTG-TCAGTGCACGGATCCGGAGAGGC---GCGAGGC a score=14984.0 s hg17.chr13_random 49123 126 + 186858 ACTAAGTAGGACAACGTGGTGCCTGCGTGTCATAGCTGGGTCTCCTCAAGACATGGATCAAGTCCA------GTAAGAATTGGGGAGACGCTTTAGAGT-CTTGATGGAGTTATCACCACAAGCCCTCTGAGC s panTro1.chr23 19803900 126 + 50034486 ACTAAGTAGGACAATGTGGTGCCTGCATGTCACAGCTGGGTCTCCTTAAGACGTGGATCAAGTCCA------ATAAGAATAGGGGAGATGCTTTAGAGT-CTTGATGGAGTTATCACCACAAGCCCTCTGAGC s rn3.chr8 60976885 120 + 129061546 ACTATGTGGGGAAGCATACTGGATGTATGTCATAATTAATTTTCACTTTGACATGACTCAC-TTGA------GTAGCTACTGGTGA-----TTTTTAGA-CTATAAGGCACCATTATTGTGAGCCCAAAGAAC s canFam1.chr26 22004760 127 + 41009621 --CCCCTCGGCCAGTGTGG-GTCAGCATCTGTCTGCTGGGCTTCCTCCTTA---GCCTCCCGTCCAAAGCAGGTAAGAATCAGGGAGACACTTGAGTGTGTTTAATAGTATTATCACCACAACCCCTGGAAGC a score=14685.0 s hg17.chr13_random 49249 54 + 186858 TACACACATTAGGGATCATGACCATTAAGTACTCAAATTACCATTTGGTTGTTA s panTro1.chr23 19804026 54 + 50034486 TACACACTTTAGGGATCATGACCATTAAGTACTCAAATTACCATTTGGTTGTTA s rn3.chr8 60977005 54 + 129061546 CACACAGCATAACGGTTGTGATTCCTGAGTACTCCAGTCAACATTAGGCTGTTA s canFam1.chr26 20787152 54 - 41009621 TACACATCCTAGCAACAAGGATAAATAAGAACTCAAAGTAGCATTTGGCTATTA a score=6999.0 s hg17.chr13_random 49303 52 + 186858 TCCGGGTATCTGTCGTCCTTGTGGCAACCCTCTTGTGAAGCTGGTGTGGACA s panTro1.chr23 19804080 52 + 50034486 TCTGGGTATCCGTCGTCCTTGTGGCAACTCTCTTGTGAAGCTGGTGTGGACA s canFam1.chr26 20787206 52 - 41009621 ACCCAGGGTCCATTATATTTCTTGCAATTCTCTTACAGATCTGGGTTAGATA a score=46167.0 s hg17.chr13_random 49355 519 + 186858 GCCTCAGTGCTGGAGCTGTGCCTCCCTTCTGAGTGGACCCTTTCTGTGTTAGCAG-GTGGGTACAAGCGTGGGGGTCAGCACACTCAGTGGATTTACACACACAGCATTAAAGAGTAAGGCTGCGCTT---TGTTTATACATTTTCAATAAATGATGATCTTCATAACATAAAATCAATGATGTAGTACACTAGAATACTGTCCCTAGTATTGAATCTTGTCTCTCAACAAAGGGTTGCTTAAAGTCACATGACAGATTCCATTCAACTGATGACACATGCTGTAGCAGCAGTTAAAGCAGTCATTTGAAAAGGCTTTTACTATAAACTTATGTGTGAGCCTGAAGTGGGGGATAAAAGAGGTGATTAGCTACCCTGTGCCATGTTTCTATTATGTGTGTGGTGGAGGAAAATTACACAGGAAGGTGATGGAGAGAACAGAGCAAAGGATTGGACAGGTCCATTGAACCCATAAGACTATGTTGAGGTTAGTGAATGAGACTGGTCATTTTAGGTCAAATTTT s panTro1.chr23 19804132 523 + 50034486 GCCTCAGTGCTGGAGCTGTGCCTGCCTTCTGAATGGACCCTTTCTGTGTTAGCAGCGTGGGTACAAGCATGGGGGTCAGCACACTCAGTGGATTTACACACACAGCATTGAAGAGTAAGGCTGGGCTTCATTATTTATACATTTTCAATAAATGATGATCTTCATAACATAAAATCAATGATGTAGTACACTAGAATACTGTCCCTAGTATTGAATCTTGTCTCTCAACAAAGGGTTGCTTAAAGTCACATGACAGATTCCATTCAACTGACGACACATGCTGTAGCAGCAGTTAAAGCAGTCATTTGAAAAGGCTTTTACTATAAACTTATGTGTGAGCCTGAAGTGGGGGATAAAAGAGGTGATTAGCTCCCCTGTGCCATGTTTCTATTATGTGCGTGGTGGAGGAAAATTACACAGGAAGGTGATGGAGAGAACAGAGCAAAGGTTTGGACGGGTCCATTGAACCCATAAGACTATGGTGAGGTTAGTGAATGAGATTGGTCATTTTAGGTCAAATTTT a score=232980.0 s hg17.chr13_random 49874 1779 + 186858 ACCCAGAGCTGGTGCAACCACTGCCCATTCTTAGCCAGACCTTATTGCAGGTAGCTCT------------GATCAATAGTCAAGGAGGCAGTGGGGGTTGCAGACTTAATTCATTAAATCACCAAAGCACCAGCCCACATGGCCACTTTTCCAGTTAATTCACAGTAGCTTGCATATTCAGGTTTGATCATTGGAAGCGAAGTT-ACTCTTTGCAGACCCATCTTTTGACAATCATTTTGCAGTGTCAGAAGGTCTGAGCAGCCTCGGGAGGCAAGCAGTCCCTGGTCCCTCAGTGTAGTCACTGGAGGAGACAGTCACTGAGAGG---CAGCTGGC---------AGG----GTGAAGGGAAAGGGGAGGCAGGCCACAGAGATGA-CAGCCTTTAAGCTGTCATACTGGGGAAGTCAAGGATCTGAAAGAGGAAGGAGAATTCTTTATCATTAAGGACCTGTCCTTATCTCAGGCATTTCCTCCAGAGCATCACCTTTGTCCACCCACACACCTTGGGCTAGGAGGACTGGGGAAAGACAGTGAAGGGC-CTCTTGGGTC-----TCTGGCACAGGGCGTGATGAAGAGGTGGCAGTTTTTCAGGAAACTCTCTCTCTAGGGAACCAAATACATTTCCCATCTCAGGTCCTTCACTCAGCGGGGTTGAGGTTCTGCTCgtcacttatcatctctgaatgtcagcaccctcaagtgtaaaatCTCAGCCACAGCCCCTCCTCTGCACCCCC-TGCAGGGCTGATG-------------------------TTCTCCATAAACCATAAGGCATCATGCCCACGGAAAAGCTGAACAGGAAAGCATGCTCCACTGCCCCGG------AGCCATCCAAGTTCCCCCTCCATATTCCACCACTGCTAAGTGTCCAGCTTATTCCTCCTGGCATGTAGTAAACACTTAGAGAACATTACTGAAGTACCA---GTCCTCTCTAAGGTTTTCCTGTATTTAGTGATTTTTTAGCCCCGTACTGTGATACTAAGAAGTAGGGCCTAAATAGGGCCTAAAAAGTATTGCTAAAATTACATTATGACAGTGCAGAGAACTGAGG-GCAGAGGGAGGACATGAGATTTCTAGGTCCACATGGCT--TAGTGGAATTTGAATCCGGGCCCCCACTCTGCACCAGCCCTGCACTCACAGTCA-------TCCTG-----CTGTGTT--CTCCTCTCCAGGAAGGCACTGCCCACACAGTCTGTCTGATAGAGGTGTTGAGTGCTCACTGAACTCCGTGATCTTCCTGAAACCCAACTTTGATTCAGTGGGCTCTGCTTGGAAGCCTGTAAAGAAAAACATCATAAGTTTAAACTTAGAACAGATTATCACTGTTTTCCCTCTGGTCTTCAGTCAGCAAGATGTCAACAGCCCTATCTATTGTAAATGCGTTAACCAGCATCTTCTCTGATAGAGA---------------------ATACAAGAAGATATGCTGTGCACACCAACCAGT--GTCGGAG------------------ACCTCATGGCTC-CCCGGTAAAGAAGAAGATGTACCCACAAGAAGGTACTGTGGAAGTTCATTAATTAAGTTGCTTCAAGAATTGCAATTGCGGGGAGT--ATTCAGTGTCCCATATGTAAGAGGAAACTATG-AAGAGACTAAGCCATA-------TTTTTTAATGTGTCAGGATTCTAATTTGCCTGGTCAGTAAATATTGCTACAACCACAAAAGTAAATATCTACTTAAAAGTCAATTG---TGGTTCATGTTTAATGATAGACAATGTTTCAAGCTAATGTCTAGAACTTACCTGGTTGTTAAAC----ATAAGCATAGATC--TCCCTGAAAGAGTGGTGCTATATTATTATTTTTCaattaatatatt--tctttagag s panTro1.chr23 19804655 1782 + 50034486 ACCCAGAGCTGGTGCAGCCACTGCCCATTCTTAGCCAGACCTTATTGCAGGCAGCTCT-----------CGATCAATAGTCAAGGAGGCAGTGGGGGTTGCAGACTTAATTCATTAAATCACCAAAGCACCAGCCCACACGGCCACTTTTCCAGTTAATTCACAGTAGCTTGCATATTCAGGTTTGATCAGTGGAAGGGAAGTT-ACTCTTTGCAGACCCATCTTTTGACAATCATTTTGCAGTGTCAGAAGGTCTGAGCAGCCTCGGGAGGCAAGCAGTCCCTGGTCCCTCAGTGTAGTCACTGGAGGAGACAGTCACTGAGAGG---CAGCTGGC---------AGG----GTGAAGGGAAAGGGGAGGCAGGCCACAGAGATGAACAGCCTTTAAGCTGTCATACTGGG-AGGTCAAGGATCTGAAAGAGGAAGGAGAATTCTTTATCATTAAGGACCTGTCCTTATCTCAGGCATTTCCTCCAGAGCATCACCTTTGTCCACCCACACACCTTGGGCTAGGAGGACTGGAGAAAGACAGTGAGGGGT-CTCTTGGGTC-----TCTGGCACAGGGCGTGATGAAGAGGTGGCAGTTTTTCAGGAATCTCTCTCTCTAGGGAACCAAATACATTTCCCATCTCAGCTCCTTCACTCAGCGGGGTTGAGGTTCTGCTCGTCACTTATCATCTCTGAATGTCAGCACCCTCAAGTGTAAAATCTCAGCCACAGCCCCTCCTCTGCACCCCCCTGCAGGGCTGATG-------------------------TTCTCCATAAACCATAAGGCATCATGCCCACGGAAAAGCCGAACAGGAAAGCATGCTCCACTGCCCCAG------AGCCATCCAAGTTCCCCCTCCATATTCCGCCACTGCTAAGTGTCCAGCTTATTCCTCCTGGCATGTAGTAAACACTTAGAGAACATTACTGAAGTACCA---GTCCTCTCTAAGGTTTTCCTGTATTTAGTGATTTTTTAGCCCTGTACTGTGATACTAAGAAGTAGGGCCTAAATAGGGCCTAAAAAGTATTGCTAAAATTACATTATGACAGTGCAGAGAACTGAGG-GCAGAGGGAGGACATGAGCTTGCCAGGTCCACATGGCT--TAGTGGAATTTGAATCCGGGCCCCCACTCTGCACCAGCCCTGCACTCACAGTCA-------TCCTG-----CTGTATT--CTCCTCTCCAGGAAGGCACTGCCCACGCAGTCTGTCTGATAGAGGTGTTGAGTGCTCACTGAACTCCGTGATCTTCCTGAAACCCAACTTTGATTCAGTGGGCTCTGCTTGGAAGCCTGTAAAGAAAAGGATCATAAGTTTAAACTTAGAACAGATTATCACTATTTTCCCTCTTGTCTTCTGTCAGCAAGATGTCAACAGCCCTATCTATTGTAAATGCATTAACCAGCATCTTCTCTGATAGAGA---------------------ATACAAGAAGATATGCTGTGCACACCAACCAGT--GTCGGAG------------------ACCTCATGGCTC-CCGGGTAAAGAAGAAGAGGTACCCACAAGAAGGTACTGTGGAAGTTCATTAATTAAGTTGATTCAAGAATTGCAATTGCGGGGAGT--ATTCAGTGTCCCATATGTAACAGGAAACTATGAAAGAGACTAAGCCATA-------TTTTTTAATGTGTCAGGATTCAAATTTGCCTGGTCAGTAAATATTGCTACCACCACAAAAGTAAATATCTACTTAAAAGACAATTT---TGGTTCATGTTTAATGATAGACAATGTTTCAAGCTAATGTCTAGAACTTACCTGGTTGTTAAAC----ATAAGCATAGATC--TCCCTGAAAGAGTGGTGCTATATTATTATTTTTCaattaatatatt--tctttagag s canFam1.chr26 22001111 1737 + 41009621 ACTCCGCGCCAGTGCAGCCCACTCCCGCTGTCAGCCAGACCTTAGTCCAGGCTGCTCGAATGGTTGCTCAGATTCATTGTCAGTGAGACCTTGAGTGTCCCAGACTTCACCCATTAAGCCACCAAAGCACCAGCCCTGGTGGCCACTTTCCTGGCTAATTCACAGTAACTGGT-TGGCCAGGGTTGGTTAGTTGAAGGGAAGCTAACTCTTGGCAGAGCTGTCATGTGACAGTTGGTTTGGAATGCTCTGGGTTCTGAGTCAGCTTGGGAGCCAAGCAG---------ACAGAGTGAAGATGCTGGGGGAGGATGCCACAGTGGGGCTTCCGCTGGCCCTCCAGTGAGGCTTTGTTTGGGGAAAACGG--------------------------------TGTCATATTTTG--GGGCAAGG-TCCAATAGGGAGAAAAGGCCCAGTTGTGATTCGGG-------CTTGGCTCAGACACTTCCTCCAAGGCATCAGTCCTCTCT-TGCAGAAACCTTGGGGCAGGAGGCATTGAGAAAGGAAGGAAGGGAAGCCCTTGGTTCAGGAGTTTG----AGGGCATGATCTGAAGGACTAGGGAGTTCAGGGACCTCTGTCCCCA-GGAACCAGTTGCA-CTCCTGTCCCAGACCCCTCACACATCAGTGTTGTGAATCTCTGCAT--------ATCTCTAAATTCCAATGCCGTGAACTCTACAGTGTGGGTTACA------------CAC-----CACAGGGCTGACGTGGAGGTCACAGGAGATGACAAATATTCCTCAGGAGCAGTAATGCATCCTCCCCATGTAAGGGATAAGGAGTAAA----CCTCCACCCTCCCGGCTCTGTGGCCGTGCAAGCCCCCTCTCTGGAGGCAGCCACTACT-------------------------------TGaacacttacagagcacttaaaaagtgacaattattttcttagagatttccctgaatttaatca-tttttagcaccatactgtaatacgacacgggaggttcta---------------------ttgaagttttcatgggattgtgcagagaaccgaggcacagaggggtggcatgaccttcccaggttcacgtggcttctagtaggatctgagccccggacttgg---ggcactagccccaTGATCTCAGTCAGGAGCTCTGCTGACTCTCTGTGTTGCCTTGTGTGAGGAAAGGTGTTTCCCACGCAGTCTGTCAGCTGGGTGTTTTAAGTGTGCACCAAACTGCAAGA---TCCTGAAGCCCAGCTTTGATTCAGAGGG-------TGGA--CC---------AGAGATCAAAAACTTGAACTGTGAATAAGTTATTACTAGTTTAGCTGTGCTCTTCTGCTGGCGAGGTGTCAACAGCTCTCT-TACTGTGAGCGCATT-TCCAGAGTCTTAGCTGATGGATATGAAAAGAAAATTTATTCCTCATTTAAGATGATACGCACCTCACCCCCAACAGTGGGTCAGAACAATGGGCATCCTGCCGCACCTCAGGGTGCACCCCGCAAACGAGGCGATG---------GAAGGTACAGTGGAAATTAATT-GTTAAGGAGACTCAAGAATCGTGACT----GAAGTTGATTCAGTGTACCATATGTAGTGGAAAACGTTG-AAAATGCTAAGCCATGTGCTTGTTTATTCCGTGTGTGAAAGTTCTAA--------GCCAGTGAGTAGTGCCGTGACCATGGAAGTAAAGATGGGTTGACAAATCACTCAGCCTTGTTTGCATTTAATAGGAAACAGTATCTCAAGCTAATGTTTGGATATTAACTGGTTGCTGAACATTAATGAAAATAGATCTGTCCCTGAAACAAGGCAGCCA---GATTCTTTTTAAATTAATAAACCAGTTTTTAAAG a score=28981.0 s hg17.chr13_random 51653 358 + 186858 agttttaaattgacataaaaactgagcatatggcca-ggcgtggtggctcacgcttataaacccagcactttaggaggccaaggcaggcggatcatctgaggtca-ggagttggagaccagcctggccaacatggtgaaaccccatctctact-aaaaatacaaaaaaattagcccggtatggtggcaggcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccgggaggcagaggttgcagtgagccaagatcatgccattgcactccagcctgggtgacaagagtgaaactccatctcaaaataaataaataaataaataaataaataaataaataaaaa s panTro1.chr23 19806437 341 + 50034486 agttttaaattgacataaaaactgagcatatggccagggcgtggtggctcacacttataatcccagcactttaggaggccaaggcaggcggatcatctgaggtcagggagttggagaccagcctggccaacatggtgaaaccccatctctactaaaaaatacaaaaaaattagccgggtgtggtggcaggtgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcagaggttgcagtgagccaagatcatgccattgcactccagcctgggtgacaagagtgaaactccatctca--------------------aaataaataaataaataaaaa a score=48569.0 s hg17.chr13_random 52011 370 + 186858 ttgagtatataatacacgaagttcccatattattctgtctcctcatcctcacttcctaatttcacctattagtaacatcttacattactgtggtacatttgctagaat-aatgagaaaatattgatacattattatctaaagtctacatttgcataatgttcattctttctgttatacatatatatgaatttt----gaaatatttaaaacattatgttcacccttatggtctcataaagaaaatgttcacttccctaaaaatcctctcttctcattaatctctgtcctctttctccagaaaccatggcaactattaacatttttactatcgcttcaactttgccttttccagaatgtcgtatagttggaatcat s panTro1.chr23 19806778 370 + 50034486 ttgagtatataatacacgaagttcccatattattctgtctcctcaccctcacttcctaatttcacctattagtaacatcttacattactgtggtacatttgctagaat-aatgagaaaatattgacacattattatctgaagtctacatttgcataatgttcattctttgtgttatacatatatatgaatttt----gaaatatttaaaacattatgttcacccttatggtctcataaagaaaatgttcacttccctaaaaatcctctcttctcattaatctctgtcctctttctccagaaaccttggcaactattaatatttttactaccgcttcagctttgccttttccagaatgtcatatagttggaatcat s canFam1.chr26 22002887 333 + 41009621 ttgaatagataacagagaaagttcttgtgtgccctcttcccctcccc----ctgccccgtttcccatattatttaccttttaccttcctgtggtctagttgttactatcagtgaaccgatatcgatgaatacttg----------acat-----taacgatcactctttgtgttgtgcatttctatgggtttttgaaaaaatacgtaatgtctggtgtcaac-----------cacccagaagagtctcactgctctagtattcccctggtttc----acctctagaccctccctcctgaagcccctg--------atcttttttactgtcactctagatttgccttttcccgactgcgatatagttgtaatcat a score=82261.0 s hg17.chr13_random 52381 899 + 186858 atattatgtagttttttcagatgaatttattgcactaaattgatgtacgctttagctgctttcatgtcttttttatgccttaatggcaaaaaatggcacattaaatcaccaaataatattgcattaaatgaatttttgtctttttattcgcctgttgaagaattcggtagatttcatgagagaaaccatctgggcctggtgctttctttttcggaatgctcttaatgtgaattcaacttatttaatagacataagtttattcacattaggattctagcgtgaccttgggaagattgcctttcaaggaattgataaatttcactgaggttatcaaactgcggtcatagaactgttcataatattccttttaatgcctaacagttcagtagagatggctcctcttttatttctgaaattggtcatttgtgttatcttctttttcttggttagcctgcatatcaattcattcattgtaatgagcatatcaaagaaccagcttttggttttattgattttctgatgatttcagtgttttaattttattgatttctgtgatgttgtttattacttttacttgctttccattgcattcctctattttctacagttccctaattgaaacatgatattactgattttagatcttgtgatttttagtatattacatccaatgctatagatttccctctaaggactgcttttgctacatccagaaatcttgccaagtcacattttcttttaatgtagttaaaagtatttttaattttctattgagacttcttctttaacccatgagttatttaaaactgcattgctaatttgcaaatatttggggattttgtggctcttttacagttgttgatttttTGTTGTCAGGTATGTGTTGCAAAAGCAGTCAT s panTro1.chr23 19807148 899 + 50034486 atattatgtagttttttcagatgaatttattgcactaaattgatgtacgctttagctgctttcatgtcttttttatgccttaatggcaaaaaatggcacattaaatcaccaaataatattgcattaaaagaatttttgtctttttattcacctgttgaagaattcggtagatttcatgagagaaaccatctgggcctggtgctttctttttcggaatgctcttaatgtgaattcaacttatttaatagacataagtttattcaaattaggatcctagcatgaccttgggaagattgcctttcaaggaattgatacatttcactgaggttatcaaactgcggtcatagaactgttcatgatattccttttaatgcctaacagttcagtagagatggctcctcttttatttctgaaattggtcatttgtgttatcttctttttcttggttagcctgcatatcaattcattcattgtaatgagcatatcaaagaaccagcttttggttttattgattttctgatgatttcagtgttttaattttattgatttctgtgatgttgtttattacttttacttgctttccattgcattcctctattttctatagttccctaattgaaacatgatattactgattttaggtcttgtgatttttagtatattgcatccaatgctatagatttccctctaaggactgcttttgctacatccagaaatcttgccaagtcacattttcttttaatgtagttaaaagtatttttaattttctattgagacttcttctttaacccatgagttatttaaaagtgcattgctaatttgcaaatatttggggattttctggctcttttacagttgttgatttttTGTTGTCAGGTATGTGTTGCAAAAGCAGTCGT a score=21531.0 s hg17.chr13_random 53280 166 + 186858 CTACCTCATCTTGCCACCACCCAAGATGGCCCAGGATGTGGGCTCTCCCTGAGTGAATCTTTGGCAATCTGCCAACCTGATGTGGTCGGCCT--CCTTCTTTAGTCTGAGCTTGTCTTCTGCTTAGAAAGGGCCATTCTCAGTTCTGGCAGGGAGTTTTCCCAA--CATT s panTro1.chr23 19808047 166 + 50034486 CTACCTCATCTTGCCACCAGCCAAGATGGCCCAGGATGTGGGCTCTCCCTGAGTGAATCTTTGGCAATCTGCCAACCTGATGTGTTCGGCCT--CCTTCTTTAGTCTGAGTTTGCCTTCTGCTTAGAAAGGGCCATTCTCAGTTCTGGCAGGGAGTTTTCCCAA--CATT s mm5.chr4 35921791 153 + 154141344 CTAGCCTACCTCACTGCCATCTGATATAGT--------TAAATTTCTCTTGACTAACTTCTTGGCTATCT---------CTGTGGAATACCTGCCTTTCTTTGATATGAGCTTGCCATATGCTTATGGAAGGTGGTTCTCAGTTCTGCAAGGCAGTCCTCCAAAAGCAAC a score=2472.0 s hg17.chr13_random 53446 5 + 186858 GAGAA s panTro1.chr23 19808213 5 + 50034486 GAGAA s mm5.chr4 35921944 5 + 154141344 GAGAA s canFam1.chr26 20163438 5 + 41009621 GAGGA a score=11993.0 s hg17.chr13_random 53451 79 + 186858 GGTGGCATTCTTACTCCCCAGTGCAGCCTGCACCTCTGACCGGTGGTC--AGCAGACAGGACAGAGGTCCTCATTAGACAG s panTro1.chr23 19808218 79 + 50034486 GGTGGCATTCTTACTCCCCACTACAGCCTGCACCTCTGACCGGTGGTC--AGCAGACAGGACAGAGGTCCTCATTAGACAG s canFam1.chr26 20163443 80 + 41009621 TGTGACGTTCTTACTCTCCAGAGCATGCTGCACA-CTCCCCGTTGCACCTGATGAACAGGACAGAGATTCTCTGGAGACAG a score=6920.0 s hg17.chr13_random 53530 79 + 186858 AGTTCAGCGGGGTCTCTGACCAAAGG-GCATCTTCAGAGTCTGCACCTACCCACTGTGACCATGGGCAGGCTCTGAGTCC s panTro1.chr23 19808297 80 + 50034486 AGTTCAGCGGGGTCTCTGACCAAAGGTGCATCTTCAGAGTCTACACCTACCCACTGTGACCACGGGCAGGCTCTGAGTCC a score=77351.0 s hg17.chr13_random 53609 684 + 186858 TAAAGCAGGAGGAACCGTGCGACCATCCTGATTGGAA--ATTTGTGAGGAT----CACCATGTTACTCAAGTAAGGTCTTTGGAAAGTGTCGTATTACTACT------GTTTGTG-AACTTCTTGTTGGTGGCCTGGCTGAGCCACACA--------CTTTATGAAAACCAGGACCCCTCAGCTGGTGTGGGTGTCTATGCAGCCTGAGACCCTCATGTGAACAGCCTCGTGGTAGCTGTCTT--TGCCCCTTGCCACCATCAGTGCCTCCTTGTTCCTGGGCACTGCTTTCTCTGATGGTGCTCCATTGTTTTCCTGC--------------ACCTCAGTGTCTA-CAGCTGGATGTCTCTTCTGCAATCTAGGTGAGGGGGCATCAATAACAGTTCTGCTGTGGCACTGCCCTCCTTCTTAGCTTGTCTTGCTCCGTCTTAGGCTCCCTCAAAGA---TCCCACCCT------------------------TCAGGTTCT-TCCA-------------------------------------------------------------CAAGTTTCTTATTGAAATCCGAGCAGAAAACTATGACCAATATGACCAATCGTATACCCACTGAAGACAT-GAATGTAGAATTAAAACAATTCTCCATGGACTCT--ACCATATAGATCCC-TAGAAGTAATTTCT---A-------AAAAAAAAAAAAAATCAAGGAAGATGTAATAGTTTTCCATAAATTAGAATAC-----CCTACATGTACAATTAAATGAAATGGCTAGTATAGTCTTGAAACCAAaaccagataag s panTro1.chr23 19808377 687 + 50034486 TAAAGCAGGAGGAGCTGTGCGACCATCCTGATTGGAA--ATTTGTGAGGAT----CACCGTGTTACTCAAGTAAGGTCTTTGGAAAGTGTCGTATTACTACT------GTTTGTG-AACTGCTTGTTGGTGGCCTGGCTGAGCCACACA--------CTTTATGAAAACCAGGACCCCTCAGCTGGTGTGGGTGTCTATGCAGCCTGAGACCCTCATGTGAACAGCCTCGTGGCAGCTGTCTT--TGCCCCTTGCCACCATCAGTGCCTCCTTGTTCCTGGGCACTGCTTTCTCTGATGGTGCTCCATTGTTTTCCTGC--------------ACCTCAGTGTCTA-CAGCTGGATGTCTCTTCTGCAATCTAGGCGAGGGGGCATCAATGGCAGTTCTGCTGTGGCACTGCCCTCCTTCTTAGCTTGTCTTGCTCTGTCTTAGGCTCCCTGAAAGA---TCCCACCCT------------------------TCAGGTTCT-TCCA-------------------------------------------------------------CAAGTTTCTTATTGAAATCCGAGCAGAAAACTATGACCAATATGACCAATCCTATACCCACTGAAGACAT-GAATGAAGAATTAAAACAATTCTCCATGGACTCT--ACCATATAGATCCC-TAGAAGtaatttttaaaa-------aaaaaaaaaaaaaatCAAGGAAGATGTAATAGTTTTCCATAAATTAGAATAC-----CCTACATATACAATTAAATGAAATGGCTAGTATAGTCTTGAAACCAAAATCAGATAAG s canFam1.chr26 20163768 796 + 41009621 taaaataGGAGTGACAG-----------TAATTGGAATTACTCGTGAGGACAGAGAGAAGTATTATTCATGTAAGGTCCGTGGAGTGTGTCGCGTTACTGTCCACCAAATTTGCGTGGCGGCCTGCTGGTGGCC---CTGCCCCACGTAACTGGGTCCTCTGTGCAAACCCTGCTTGCTCAGCAGGCCTGAGCCTCTGAACAGCTCAGAGGTGCCACGC-----GCATCAGAGCTGCTGCCCCCATGGTCCCAGCCAGCCCCAGC-CAACCTCTGCCATGGGCATTCTTTTCTC----AGTTCTATGTTGTGTGCCTGCCATTTTTTCTTAAAACATAGATGTCTAGGGGCTGGCTGTCTCTACCAGAATCTAGGGCATGTGGGATATACAGCAGTGTTGCCGTGTCACTGCCCTCCTGGCACACTCATTGTACAGCCTCACAGGTCCTTCCAAAGAACCCCCCACCCTCCCCCACGTATCCCAAGCACTTAACCAGGCTTTGTCCATTTGGCCCAAACATATAAAGTGAGTTTAGTCACCTCTGCATGCAGCTGCCTTCAGAGGGGTTAGGTTACTTGTCCGAAGCCAGGCAGAAAAT---------CATGGCTAGTCCTACAGTCACTGAAGACATGGGATGAGTCATCAAGACAACTTCCCAAGGAATAGAAATCACACGGAACCCTTAGAGGTCACTTCCTGCATCTGTTCAGTGAACAGATCATTCTAAATAGACTCAA-AGTTTTCCATTGAATAGAAGACGGTTGGTTCATTCCACAACTAATTAAAGAGGCAAATATAACCATAATAGTGGAATGAGGTGGG a score=130269.0 s hg17.chr13_random 54293 1506 + 186858 gtaaattaaattctgtgatattttaaaatactgtaaattctgactaatgtgagttaatctcaaaatatgaaatagtagattaacattgaaaatgcaataaataaaattagctacctcaagagtttaatggaaaaaaatgtgattattgcaatagattcaggaaattcgtgaataacattcaccctatatttgtaggacaa-ctatcTGA------TTAAGTGACCTGTGACAACCATTTGAATTAATGCTGCTTTCACAGCATATCTCTTGGCTTGTTAAAAACCCGACAAGAATTTCCATAACATTAATTTATTTTtaacacctatattgggtgtgaacccaccataaagtttgcccactgaaaaggtctgcaatttgatgctttattaaattgatactgtgtgcacccaacaccacgatctaatttaaatatgtttccctcacccaagttctctcttgtgcactggcagttaatccccactcccatctccagccctaagcaatactgctgtgacattccatctccataaatttcccacttgctttatagaaatggacatatatatatatttggaatctgacttccttcatttagcatactatgtttgaagttaattgacgtgttagcacgtgctggtcatgtgttttccttcatagtctgctgtgtttattcatacagatagtgtttattcatttatcagttaatggacatttaattattttgtttttttctttgatgagtaatgtagctttgagcattcatatacaGTCATGTAATGCATAATGACATTTTGGTCAAAAAAAAttttttttttttctgagacccaggctggagtgcagtggcacaatctcagctcactggaacctccacctcccaggtttaagcaattctcatgcctcaacctcccgagtagctgggacaactggcacacaccaccacgcatggataatttttgtattttcagtagagacaggattttgctgtgttggtcaggctagtctcaaactcctagcctcaggtgatccgcccacctctgcctctcaaagtgctgggattataggcatgagccaccacacccagccTAATTTTTTTAAGAAAC--GAGAACTATTTTCTAAATTACTTTTGCCAATTTATATTCCTACCATGATGCATAGTACTAATTTCACTGTACAATGTATGGTAGGCCCCAATATGTAAGAAATGATGAAAGTAACACATAAAGATTAGTATAAAACAAATGAGATTATCATTGTTGCTATCATCTTTGTCAAATTCTGAAAACAATCTGAGTATATTTTTATATAAATATGCTTGGCAACATAGCTGAAAAAAGCATTATCAGTTACATTTATCAGTAACAAAGACATAAATTTGAAGGGGGAAAAACACTTGTACTAACAACGCAATGTCAGAATTAACATAAAAATTCTGCTGGTCACTTTGGAATATTTAATTGCCTGGGGCAGTGTTTAGTAGACAAATGAGCAACTATGGAGCACCCAAAGTAGGGG s panTro1.chr23 19809064 1512 + 50034486 gtaaattaaattctgtgatattttaaaatactgtaaattctgactaatgtgagttaatctcaatatatgaaatagtagattaacattgaaaatgcaataaataaaattagctacctcaagagtttaatggaaaaaaatgtgattattgcaatagattcaggaaattcatgaataacattcaccctatatttgtaggacaagctatctgattaactTTAAGTGACCTGTGACAACCATTTGAATTAATGCTGCTTTCACAGCATATCTCTTGGCTTGTTAAAAATCCGACAAGAATTTCCGTAACATTAATTTATTTTtaacacctatattgggtgtgaacccaccataaagtttgcccactgaaaaggtctacaatttgatgctttattaaattgatactgtgtgcacccatcaccacgatctaatttaaatatgtttccctcacccaaattctctcttgcacactggcagttaatccccacccccatctccagccctaagcaatactgctgtgacattccatctccataaatttcccacttgcttaatagaattggacatatatatatatttggaatctgacttccttcatttagcatactatgtttgaagttaattgacgtgttagcacgtgctggtcatgtgttttccttcatagtctgctgtgtttactcatacagatagtgtttattcatttatcagttaatggacatttaattgttttgttattttctttgatgagtaatatagctttgagcattcatatacaGTCACGTAATGCATAATGACGTTTTCGTCAAAAAAAA--TTTTTTTTTTCTGAGAcccaggctggagtgcagtggcacaatctcggctcactggaacctccacctcccaggtttaagcaattctcctgcctcaacttcccgagtagctgggacaactggcacacgccaccatgcctggataatttttgtattttcagtagagacaggattttgctgtgttggtcaggctagtctcaaactcctagcctcaggtgatccacccatctctgcctcccaaagtgctgggattataggcatgagccaccacacccagccTAATTTTTTTAAGAAACAAGGGAACTATTTTCTAAATTACTTTTGCCAATTGATATTTCTACCATGATGCATAGCACTAATTTCACTGTACAATGTATGGTAGGCCCCAGTATGTAAGAAATGATGAAAGTAACACATAAAGATTAGTATAAAACAAATAAGATTATCATTGTTGCTATCATCTTTGTCAAATTCTGAAAACAATCTGAGTATATTTTTATATAAATATGCTTGGCAACATAGCTGAAAAACGCATTATCAGAAACATTTATCAGTACCAAAGACATAAATTTGAAGGGGGAAAAACACTTGTACTAACCACGCAATGTCCAAATTAACATAAAAATTCTGCTGGCCCCTTGGGAATATTTAATTGCCTGGGGGCGGGGTTAATACACAAATGAGCCTCTATGGACCACCC-AAGCAGGGG a score=10850.0 s hg17.chr13_random 55800 125 + 186858 ATCAACAGAACTTGGGTTTCAAAAGTTATCTGGGTTTAGAGCGTGAAACTTTGTTAGAGGACACACACCTTGCATGAGCGAGGTGACTTGGTGTGTGTGGACGTGTTGGAGGCACAGCATAATGG s panTro1.chr23 27877830 125 - 50034486 ATCAACAGAACTTGGGTTTCAAAAGTTATCTGGGTTTAGAGTGTGAAACTTTGTTGGAGGACTCACACCTTGCGTGAGCGAGGTGCCTTGGTGTGTGTGGACGTGTTGGAGGTACAGCATGATGG a score=22679.0 s hg17.chr13_random 55925 363 + 186858 TGGCTTCCTCCAGAAAGGGACATTTGGG--------------------------GTGGATTCATTCCATCTAGACAACACAGCCTGATGTGGCATGGACATGAATGGAGGTGAAATGGTCAGTAGTTGAGAGGATCAGTCCTGACAAGGGCCGAAGTGAAAAACCTGGGAACCCCTTCAGGTGCAAAGTCTTCAGTTG-AAAAAGGAGGTGGTCACAGGAAATACTGAGACGGGTCAGCAA--TGCATGGGAGACAGAGTTCTTGGCCCTGCAGGGTGAGTAGTGTGGATTCTCAAGTTTTCTCCTCTCTCCATTAATTTCTTTCCCAATGCAGAT----------GACTTCCATCATACAATCTTCAGCAACCTTGAAAGATTGGACAAGCTTCAGCCCAC s panTro1.chr17 2032600 387 + 73346066 TGGCTTCCTCCAGAAAGGGACATTTGGGGGAGCACCAATGGCTCCTGTCTCACAGTGGATTCATTCCACCTAGACAACACAGCCTGATGTGGCATGGACATGAATGGAGGTCAAATGGACAGTACCTGAGAGGATCAGCCCTGACAAGGGCCAAGGTGAAAGACCTGGGAGTCTCTTCAGGTGCAAAGTCTTCAGCTGAAAAAAGGAGGTGGTCACAGGAGATACTGAGCTGGATCAATAAAGTGCA--GGAGAGAGAGTTGTTGGCCCTGGGGAGCGAGTAGTATGGACTCTTAAGTTTTCTCCTCCCTCTATTAATTTCTCTTCCGGTGCAGACTTCAGTCTTAGACTTCC-------------CAGCTGCCTTGAGGGATTGGATGAGCCTTGGCCAAC a score=115324.0 s hg17.chr13_random 56288 1422 + 186858 TCTTGAAGGTAAAGGAAGGCAGCTAACAAGACTGGCATCTGGGCTTGGCTGTGCATGtttgctatcttggagaaatatatataacacaatatttatcatttgaaccttttaaccaaagtgtgcactccgtggcattcaatatattcacagggttgcataaccaacaccactatctacacccacaattttgatgatttcttacaaaaccttgtccacaataagcaatatagcgccttccccctatttccagcccatggtgattcctatcc-actttctcttgtatgaatttgactattctaggcacttcatgtaagtacaattatacaatatattccttttgtgtctggcttatttcactaagcataatgttctcaatgtccacccatgttgtatcatctaccaaaattatgttcgttttttacagatggatgatgtagcattgcatgtagaccaccttgcttttattacattcatttgttcactgatggttggattatttccaccttttgcctcctgtgaaaagtgatgctataaacattagtatacaagcatctgtttgatttctgttctctattgtttggggtgcctaagagtagagttcctgggtctaacgggagttctacatttaaccttctgagccactgcagactgtttctcacagtggctgcaactttatccatttctaccat-caatgtatcagggttacaatttctttacatccttgttcacacttattttcctttaaatcatcctagtaggtgtatattggtgtctgcttgtgtttttcatttgcatttccctaatgactaatgatcctgagcagcttttcctgtgctactatctgtggctatatcttctttagggaaatatatgttgaagtcttttgcccatttttaaagagttgtctgatttttatttagttagtttgttgttgtagattttt-----gaatatatcttaaatatatttaaaatatattctaaattttagtctcttacaagataaatgatttgcaaatatttccccctttgtgtagAACTTTAGATTCACAAACTTCATTAATTTGTAAGAAATCCTCAGCAGTTGACCCCAAACAGATAAGACTGAAGCAGTATCTTAGGAATAGTTGAAAGTATGATCACCACAAAACATAAGCGTAATCAAATCCTGCAAGCTACATGTAAGGCACAATGACAAATAAGGCAGCAAAGGGCCATCTGGTGATTAGTTCACCACACTTGTTGCAACTGTTTGTGCTGCAGAATTAAAACATACCAGCATTCAACCCATGTCTCCTCTCTTGAAGTAAACTGTCGTATGTTGGCTGGCCTGAACAAGCGTAGATATTCTCCATCCTCAATTAAT-ATGCATGCATGACAAAGAAAAGGAGGCCGGGATGAAAAAATATTGTGTGATTAATAATTATG s panTro1.chr23 27877960 1399 - 50034486 TCTTGAAGGCAAAGGAAGGCTTCTAGCAAGACTGGCATCTGGGCTTGGCTGTGTGTGttttctattgtgggaaaatatgtataataaaatatttatcatttgaaccttttaaccaaagtgtgcactccgtggcattcaaaatattcacagtgttgcataaccaacaccactatctacacccacaattttgatgatttcttacaaaaccttgtccaccgtaagcaacatagcaccttccccctatttccagcccatggtgattcctatcccactttctcttgtatgaatttgactattctaggcacttcatataagtacaattagacaatatattccttttgtgtctggcgtatttcactaagcataatgttctcaatgtccacccatgttgtatcatctatcaaaattatgttccttttttacagatggatgacgtagcattgcatgcagaccaccttgcttttattacattcatttgttcattgatggttggattatttccaccttttggctcctgtgaaaagtgatgctacaaacattagtatacaaacatctgtttgatttctgttctctattcttt---------aagagtagaattcctaggtctaacgggagttctatattgaaccttcggagccactgcagactggtttccacagtggctgcaactttatccatttctaccatgcaatgtatcgggattacaatttctttacgtccttcttcacacttattttcctttaaatcatcctagtaggtgtatattggtgtctacttgtgtttttcacttgcatttccataatgactaatgatactgagcagcttttcctgtgctactatctatggctgtatcttctttagggaaatatatgtttgagtcttttgcccatttttaaagagtcatctgatttttatttagttagtttgttgttgtagatttttgggggg-----------------tttaacatgtattctaaattttagtttcttacatgataaatgatttgcaaatatttccccctttgtgTAGAACTTTAGATTCACAAACTTCATTAATTTGTATGAAATCCTCAGCAGTTGACCCCAAAAGGATAAGACTGAAGCAGTATTTTAGGAATAGTTGAAAGTATGATCACCACAAAACATAGGCGTAATCAAATCCCGCAAGCTACACATAAGGCGCAATGATAAA----GCAGCAAAGGGCCATCTGGTGATTAGTTCACCACACTTGTTGCAACTGTTTGCGCTGCAGGGTTAAACCATACCAGCATTCAACCCATGTCTCCTCTCTTGAAGTAAACTGTCGTATGTTGGCTGGCCTGAACAAGCGTAGATATTCTCCATCCTCAATTAATTATGCATGCATGACAAAGAAAAGGAGGCCTGGATGAAAAAATATTGTGTGATTA-TAATTATG a score=28766.0 s hg17.chr13_random 57710 273 + 186858 CTTTAATTAATTTTAAAGGATATAATTTCAGTACTTCTAATTCTCCCATCA------GCAGTTATAACAAAGGATTAGTGAATAAATACCATAGACTGTT--------------------------TTGCCTAGAATTG---AATCCAATCTGTCTATTAAACTTTGCTTTTATTCAAGTGCAAAATGCTAAAACACATAATAACTACAGTGACAGCCACTGTGGATCCTCAGAGGCAAAATTAGTCTTGGGACATAAATCCTGCAAGCTAATATTGTTTTTACAGGGTTTAGAAAAC-----CATTTAGCTG s panTro1.chr23 27879359 272 - 50034486 CTTTAATTAATTTTAAAGGATATAATTTCAGTATTTCTAATTCTCCCATCA------GCAGTTATAACAAAGGATTAGTGAATAAATACAATAGACTATT--------------------------TTGCCTAGAATTG---AATCCAATCTGTCTGTTAAACTTTGCTTTTGTTCAAGTGCAAAATGCTAAAACACATAATAACTGCAGTGACAGCCACTGTGGATCCACAGACGTAAAAATGGTCTTGGGACATCAATCCTACAAGCTAATATTGTTTT-ATAGGGTTTAGAAAAT-----CATTTAGCTG s canFam1.chr26 18909718 267 - 41009621 CTATGGCTATTTGTAAATGGTACACGTTCGGTATTTAAATCTCTCCCATAATGGATGATTTTGATGATAACAGATTAATGAATAAAAACAACAGAGTAACAGACTAAATAAGAACAGATTGAAGGATTGCCCAACATTGCACAAGCCCACCC-TCTTTTGA----CGGTTGAAATCAAGTGCAAAACCATACAAGAGACA----------TGACAGCATATGTGGATCTACAGAGGCAGAAATGGTTTTGG-------------------------------AAGAGGTCAAGAAGGTAGGAACATGGAGCTG a score=6281.0 s hg17.chr13_random 57983 74 + 186858 GGTTTCAAACCTCACAGTGTGAGCAGTGGGACTCTCATCAAACTATAGCATGTGCTTCAGTACCATTTGTAGAC s panTro1.chr23 27879631 74 - 50034486 GGTTTCAAACCTCGCAGTGTGAGCGGTGGGACTCTCATCAAATTATAGCGTGTACTTCAGTGCCATTTGTAGAC a score=164889.0 s hg17.chr13_random 58057 1583 + 186858 TGACTCATTCCCATTGCCTTAAGTTGCCATCAGC--AAAATGCCAGGGACTCTATTTCTTGCTCCTTAGCTCCTCGTTCTTGCTTGTCTT------TCCACGAGGGAAGATTTTCTAGCAGGAGCTCAAGCTGTGCTTTT-----AATGAAACACATCCACACACACTGT--CCTGTTGTCCACATTAAGCAGAGCTCCCTGAATAACTCATGAACAAAAGCATCTATG-ACTAACTGTTGCTGTGTGTCCTCCTAGCCT--CTGAGGAGTCTCTAG------TTCACAAGGACAGAGGAGATGGAGAGAGGCCAGTCAACGTGAGGGTAAGGTTGCCTTGCTTTCTCTGAAATAGAAA------------------TGTTCCTTTCTTGGTGTCTTTCT---------------------------TTTTCAACTGACTTTACATGTGAAAAAATGACAATGTCCATGACAGGTATTAAATGCAGTTTTCTG--AGGGG----GAGGAAGAAGTGACTCTTAGCAACTGATATGTAATCCAAAATGGCATTTAGCTATGACGGCTTCAGGTTGTAGACTGTATCCTTGGGATCCTTGTCCTT-GGAAGCAATGTCTTCTCCTTGGATTCAGTATTTTGCAC-TTGCCAACCTACGTGGACCTGAGAGATACACCATCCAGAAGCTGATGTCTTTTCCAGTGTGTATCCTACCCTTGTCTTGGAGGCCTTGAAGTTGACTACACTTTCTGATCAAGTTTTCAGTATTCATTGAGAGAAACAGAGCCTTGTGCAAA-CAATCCACAACATGACATACCCCTCAAAAAGTTTTGTT---TCTGTATTGCAGGTGG-TGCAGGTGGCCCCTCTGAGGCGTGAATCTAGTAAGTATTCTGGAATCA----CTTGCCAAGAAAACAATCTGGATGCCAAGAAAGGTGTGGCATCCTTGCCTGGTTTCAATGTGAAGAGCCACCCTGATCCTGGGATTGTGATAGGAATAAGTATAGGGGAAGTGTTTTTTT-AAAACC--TGAATTCCCCAGGGAAAAATTATGGCCAAATTTT----------GAGGAAGCAGCTGTGCTCCCTTTTGGGTGGTGCTGAGTTGGGTGCTTGAGGATTGG-TGGTGTCTTGTTTGAGGCTGCATCGTGTGGTGTGAATGTG---TGTGTTTCTGTACAGGTGAGGCTGTGTG--------TTTTCTCAGGAGAGATTTCCCACTTATACAACCCAATCACCAGTGTCCACTTC---------TAACAATAAAATCCACCCCCGCTCTACTctctctgtacagtgactc-ctctaccctcaccagagccatccccggg----tctgccttattatcccgactactcaggtggagaacctgaagggccaa-gggagtggccccagctcctgagttcctgaatgaaaaagtgaaaacacgaacccaggAGTGTGGGCCAGTGCTGACA----------CTGACATGCACTT-------AGTCATGGAGTGTTCACCACCACACAGGGAGTTCAGCATTCATCTATAAGCCCTAAAGCACCG--AGCCCAAAAGGCCCCAGACACTGCCCATCATCATAAAGTGGCCTCTGTGGTCACACAACCCAGGGCAGTTATAGGCTCATCTCCCCACGGACAGGCATAGTCATCAGTGTGTCAAAAGCAC---AAAGATCCCCAGGTGTTTTGCTCAGCTCACAG s panTro1.chr23 27879705 1586 - 50034486 TGACTCATTCCCATTGCCTTAAGTTGCCATCAGC--AAAATGCCAGGGACTCTATTTCTTGCTCCTTAGCTCCTCGTTCTTGCCTGTCTT------TCCACGAGGGAAGATTTTCTAGCAGGAGCTCAAACTGTGCTTTT-----AATGAAACACATCCACACACACTGT--CCTGTTGTCCACATTAAGCAGAGCTCCCTGAATAACTCATGAACAAAAGCATCTATG-ACTAACTGTTGCTCTGTGTCCTCCTAGCCT--CTGAGGAGCCTCCAG------CTCGCAAGGACAGAGGAGGTGGAGAGAGGCCAGTCAACGCGAGGGTAAGGTTGCCTTGCTTTCCCTGAAATAGAAA------------------TGTTCCTTTCTTGGCATCTTTCT---------------------------TTTTCAACTGACTTTACATGTGAAAAAATGACAATGTCCATGACAGGTATTAAATGCAGTTTTCTG--AGGGG----GTGGAAGAAGTGACTCTTAGCAACTGATATGTAATCCAAAATGACATTTAGCTGTGATGGCTTCAGGTTGTAGATCGTGTCCTTGGGGTCCTTGTCCTTGGGAAGCAATGTCTTCTCCTTGGATTCAGTATTTTGCACTTTGCCAACCTACGTGGACCTGAGAGATCAACCATCCAGAAGCTGATGTCTTTTCCAGTGTGTATCCTACCCTTGTTTGGGGAGCCTTGAAGTTGACTACACTTTCTGATCAAGTTTTCAGTATTCATTGAGAGAAACAGAGCCTTGTGCAAA-CAATCCACAACACGATGTACCCCTCATAAAGTCTTGTT---TCTGTATTGCAGGTGG-TGCGGGTGGCCCCTCTGAGGCTTGGTTTTGGTAAGTATTCTGGAATTA----CTTGCCAAGAAAACAATCTGGATGCCAAGAAAAGTGTGGCATCTTTG-CAGGTTTCAATGTGAAGAGCCACCCTGATCCTGGGATCGTGATAGAAATAAGCACAGGGGGAGTGTTTTTTTAAAAACC--TGAATCCCCCAGGGAAAAGTTATGGCCAATTTTT----------GAGGAAGCAGCTGTGCTCCCTTTTGGGTGGTGCTGAGTTGGGTGCTTGAGGATTGG-TGGTGTCTTGTGTGAGGCTGCATCGTGTGGTGTGAATGTG---TGTGTTTCTGTACAGGTGAGGCTGTGTG--------TTTTCTCAGGAGAGATTTCCCACTTATACAACCCAATCACCAGTGTCCACTTC---------TAACAATAAAATCCACCCCCGCTCTACTCTCTCTGTACAGTGACTC-CTCCACCCTCACCAGAGCCATCCCCGGG----TCTGCCTTATTATCCCCACTGCTCAGGTGGAGAACCTGAAGGGCCAAGGGGAGTGGCCCCAGCTGCCGAGTTCCTGAATGAAAAAGTGAAAACACGAAGCCAGGAGTGTGGGCCAGTGCTGACG----------CTGACATGCACTT-------AGTCATGGGGTGTTCACCACCACACAGGGAGTCCAGCATTCATGTATAAGCCCTAAAGCAACG--AGCCCAAAAGGCCCCAGACACTGCCCATCATCATAAAGTGGCCTCCGTGGTCACACAACCCAGGGCAGTTATAGGCTCATCTCCCCACGGACCGGCATAGTCATCAGTGTGTCAAAAGCAC---AAAGATCCCCAGGTGTTTGGCTCAGCTCACAG s canFam1.chrUn 26450158 1634 + 91062872 TGACTATTTCACACTG-ATTATGTCTCC-TTAGCTAAAAAAGACATAGATTCTGTTTCCCACTTCTTTGCTGCTC-CTCTCCTTTGCCTTCCGTCATCCACTAAGTAGGTGGGCCCAGGAGCAGCTCAGTCCTTCCTTGTTCACCAGTGAG------TAACAAGCGCTGTAGCCCTGTGTCCACCTCAAGCAAAGCTCCTTGAGTAATTCCTGAGCAACACCAGCAATGCGCTGACAGGTA-TCTGTGCCTTCCCTGTCTTGCAGAGGGCCCACTGGAGGTTTCTCCTGATGGCGGGGCAGAGGAAGGGGCCCCATATCTCCCCAAGGTAAGATCAGCTTTCTTTTCCTGATGTAGAAATCtctctgtctctctctctgtccctgtctctgtctctatctatctctctCCTCTCTCTTCTCGGGTAGTTTTCAAATCAATGCAGATTGTAGGACATCACAATGTACACAAGCAATGCTATGTGCAATTCCCTGTTTGGGGCCATGTCGAGTGAAAGTCTATAATCACCTGACAGCTGAAACAAGAGGCAA--GAGAAATGACAGCATCA-GTTACAACATGTAGAGTAGAGAGCATTCTCATC-CACAG-AACCTTTTCTTCCTTGAAAAGGAATTTTGTAC-TTGCTGATCAGAATGGACTGGACAGGTCTGCCAGGCAATGGTCAA-GCCTCTTCCCTTGGGTGTCCTCTTTAAATTGGGGGAGCCATCGACTCAAACACTATATATGATCTGGTTTCCTGGACTCATC------------------TTCAAAGCAGTGTATAGAAGGATATGACCCTCCTAATGTCTTCTTTTCTCTCAATCACAGGTGGATGCAGGAGGA------AAGGAGAGCT----GTACGTATCCTAGACTCAGGGCATTTTCA--CACAGAATCTAGGTGATGAAGAAGGTGGGGCTGCCCTGGCTGCTT------TGGAGAACCACCAGTTTCC--GGGTTTCCACTGGGAGGGGGATAGGAGAATCAC-------GAGAGCAACGGCCTCTCCTGGGAAGAACTAGAACCATGTTCTATAGACTCCAGAGGAAGTAGTT--------TTTTCAATGA----GGTTTATGTGTATGAGGTTTGGAGGGAGTTATGCATGAGTCT-----CTGTAACATGACTGTGAGAGGTGTCTGTGTGTGCGTGTGGTTGTGTGTGTGCATATTCCTTCTGGAGCTCTTTCTCACTTAAACAA-CAAACTGCAAGTGTTGAAGTTGTAAAGAAGGAAAAAAAAAACCCTCCAAGGC---ACACTTTGCCTACATTGGCCCATTCCTCCTTCACAGCATTTGTGTCTGGAGGATTCTTCAAAATTACTTCACCTCACTAGATATAGA---------GCAGAGATGAATGGCCCAAGCCATTCCCTTCCTATGTGGAAAGGTCACCATGTGAACCAACGCCTATGTCCCAATGTTGGTGCCCTGGGCTACTGACCTGCCCTTATCTCTCAGCCCCTGGGTCATCA-GAGAGCAAGGGAGTTCCAGCATCAGAGTCCATGACTGACAGTACCGGAGGCTACAGAGGTCCCACAGAGTGCCCAAAAGTCAAACGAGGCCTCAGTGGCCCCAGAAAGCAGGGGAGTTAGAGGGTACTTCACAGCTGCTTGGGCATAA-CATTGGTGTGT--ACTGCACCTAGAAGGCCCGCAGACTTCTGG-TCAGCCCACAG a score=14358.0 s hg17.chr13_random 59640 195 + 186858 ATC-----TTTtttttttaac-----ttttaagttcaggggtacatgtgcaggatgtgcaggtttgctacatatagaaatgtgtgtcatg-agagtttgttgtacagattattgcatcacccatacattgagcctaatatcagctatttttcctgatcctccccctcctcccacctcccaccctccagtgggccccaCGCTCACAA s panTro1.chr23 27881291 203 - 50034486 ATCCTTTTTTTtttttttaacttttattttaagttcaggggtacatgtgcaggatgtgcaggtttgctacatatgtaaatgtgtgtcatgaagagtttgttgtacag---atttcgtcacccatatattaagcctaatatcagctattttccccgatcctccccctcctccaaacttccaccctccagtaggccccaCGCTCACAA a score=3030.0 s hg17.chr13_random 59835 13 + 186858 ATTCTAAGAGGAG s panTro1.chr23 27881494 13 - 50034486 ATTCTAAGAGGAG s canFam1.chrUn 26451792 13 + 91062872 ATTCTCAGAGGGG a score=8978.0 s hg17.chr13_random 59848 63 + 186858 TGGGGGACCACAAATGCCAGTGTGGCCCACTTCAGTTG----TGAAGTTAATTTGCTCAGCAGCTGG s panTro1.chr23 27881507 63 - 50034486 TGGGGGACCACAAAGGCCAGTGTGGCCCACTTCAGTTG----TGAAGTTAATCTGCTCAGCAACTGG s rn3.chr3 68307987 63 + 170969371 TGGGGGAGAAAAGATGCCTGTGTGATCCACTTCCGTTA----TAATGCTATTTTGCACAGTTGCTGG s canFam1.chrUn 26451805 64 + 91062872 AGAGGTCCCATGCAAGACAGTGCAGGAAACAGCAATCATTGCTGGAGTC--CTTGATCAGACACGG- a score=22580.0 s hg17.chr13_random 59911 190 + 186858 CCAAAGCCTGTAAGGATGGGTGATGTATTTTAGTAGATTTAGTAATACTATCTTCCCAAGCCCTAAAATGCTCAAAACCTGCCAGC-CAAAAATGGTGAGGAGGGACAGATAGGAACTCTGTGTGGCACTTGGTTATTAGCCTGGC-TTCCATCCCTTAGTGGCAACTCTCTTGTATATGTGGGTTAAAGAC s panTro1.chr23 27881570 190 - 50034486 CCAAAGTCTATAAGGATGGGTGATGTATTTTAGTAGATTTAGTAATACTATCTTCCCAAGCCCTAAAATGCTCAAATCCTGCCAGC-CAAAAATGGTGAGGAGGGACAGATAGGAACTCTGTGTGGCACTTGGTTATTAGCCTGGC-TTCCATCCCTTAGTGGCAACTCTCTTGTATATGTGGGTTAAAGAC s canFam1.chrUn 26451869 189 + 91062872 CTGAAGCAGAGAAGCAGCAGACAGATATTTCAGTGTGTTTGATGACATTTTCAT--TAGGCATACAAGCGCTCAACTCCTGCAATCACACACCCAGGGGACAGTGGAAAAGAGGAACTCAACGGAAAACTTGGTCCTTAGCTTGGTGCTTAACACCCTTGTTTCAG-TCTCCTGCACAGTCAGGCCAGAGAC a score=14307.0 s hg17.chr13_random 60101 158 + 186858 CCTCAGCCTCAAGCCAAGCCTCCTCCATGAGGAGCCATCTCACTATTGACTGGCTAGTGCCGGGTATGGCCACCAGCCCAACTGAAACAAAATGTTGCTTTAAAACAAGTGTAAATCT----CATACAACAGGCAAATGCAGAAGCAATGTGGTCTCGCAAG s panTro1.chr23 27881760 162 - 50034486 CCTCAGCCTCAAGCCAAGCCTCCTCCATGAGGAGCCATCTCACTATTGACTGGCTAGTGCCGGGTATGGCCACCAGCCCAACCGAAACAAAATGTTGCTTTAAAACAAGTGTAAATCTCATACATACAACAGGCAAATGCAGAAGCAGTGTGGTCTCGCAAG a score=25698.0 s hg17.chr13_random 60259 213 + 186858 TTGTAAAGAGGACAGTCGCAATTTTGCTGGACTTCAACCTGGGT--AGAAGACATGAGGGAACTCTGTCACTGAATCACGGC---------AGAGTTCAAGGCCACTTGTAGACT-ATTTCATGTTACAGA--AGGTAGCCTTTAGCTACTAAGCAAAGGCCTCGGTTTCTCATTTCTTTCCTGTTCATCTTCTTGGTCATCCTTCTTCCGCAAGGGAAACGAGCCC s panTro1.chr23 27881922 211 - 50034486 TTGCAAAGAGGACAGTTACAATTTCGCTGGACTTCAACCTGGAT--AGAAGACATGAGGGAACTC--TCACTGAATCACGGC---------AGAGTTCAAGGCCACTTGTAGACT-ATTGCATGTTACAGA--AGGTGACCCTTAGCTAGTAAGCAAAGGCCTCTGTTTCTCATTTCTTCCCTGTTCATCTTCTTGGTCATCCTTCTTCTGCAAGGGAAAAGAGCCC s canFam1.chrUn 26452529 220 + 91062872 TTGCAAAGAAGAGAGTGGCAATTTAGCTGAACCTCAA---AGATACAGGAGGCATCAGGG-ACTCTGTCGTTACAACATAGCATATATGTTAGGGTATATG--CTCTTTTAGACTGACTTCTTCCCACCGAATAGGATTCCTCTCACAAGGAAGTGAAAGGTCCCATTTCTCCTTTCTTTGCTCCT-GCCCTCTCTGCCTCCCTTTGTCCACCAAGGAGGAGGGCCC a score=36921.0 s hg17.chr13_random 60472 244 + 186858 AAGCAAAAGGCAGTTTCAATATTAATTTGACCGAGGTTTTGTGCAGTTTATTATCATCCAGGTAATCAGGTGCAACCCAGTCTGCCTA-GCAGCCCCCCTCTCTCTGCTCTGTGTTTTCATTTAATAAACATTTTGGTCTACTTACTATGTGCTAGATTTTCTCGAGACC---AAGTAAATGAGATAGAATCTTT---------ATGTTGGCAGCTAAGTTAGATTTAACATAACTGACAAAAATTAAAATTTCTGA s panTro1.chr23 27882133 246 - 50034486 GAGCAAAAGGCAGTTTCAATATTAATCTGATCAAGGTTTTGTGCAGTTTATTATCATCCAGGTAATCAGGTGCAACTCGGTCTGCCTA-CCAGCCCCCCAC-CCCTGCTATGTGTTTTCATTTAATAAATATTTTGGTCTACTTACTATGTGCTAGATTTTCTGGAGACCGCAAAGTAAATGAGATAGAATCTTT---------ATGTTGACAGCTAAGTTAGATTTAACATAACTGACAAAAATTAAAATTTCTGA s canFam1.chr20 43405904 249 - 61172541 AAGCCAAAGGAAATTTTATTACTACT---ACCAAGGATTTATGTTGTTTATTATAATACAGGTAATCAAACGTAGGACTATCTGCCTACCCAGCTGCCCTC---CTTCACTGTGTTTTCATTTAATAACTATTCAGGTTTATTTGCTGGGTGCTAGCTTTGTTGGAGACCACAAAAGAAATGAGATACATTCTCTGCCTTCATGAAATTGAGAAGTCAGATGGAATTAACAAACCTGAC--TCATGAAAATCTGTGA a score=27906.0 s hg17.chr13_random 60716 356 + 186858 TTTCTTGTAAAAA----TTGTATGTGTGAATGCATACTGAAAGTAAAGTGGTTAACAAAAAAAATCACACTTGCACTCATGGAAGGCTTTTCATGAATTTGTCAATTTCTATTTTTTTATATTTCCCCACTTCACTGGATAATGCATATCTGAACCTGGAAACTGATTCCCACTGTAGAAAGTGTTCTGAGCCACATCCCTTAGCTTCACTAGTGCAGGTCCACCTGGGAGTATGTCCCAGCATCAGCTTGGCCCATGCTGTGATAAGCCACCTCCATGCA-CCACACCAAGCAAGC-CCCTGGGTGATTCACAGTCTCCACCACCAGGGCACTGACCTTTATTCTGTGTTCTTCAAGCTCC s panTro1.chr23 27882379 353 - 50034486 TTTCTTGCAAAAATATTTTGTATGTATGAATGCATACTGAATGTAAAGTGGTTAACAAAAAAAATCACACTTGCACTCATGGAAGGCTTTTCATGAATTTGTCAATTTCTATTTTTTTATATTTCCCCACTTCACTGGATAATGCATATCTGAACCTGGAAACTGATTCCCACTGCAGAAAGTGTTCTGAGTCATGTCTCTTAGCTTCACTAGTGCAGGTCCACCCGGGAGGATGGCCTAGCATTAGCTGGGCCCATGCTGTGATCAGCCACCTCCAGGCACCCACACCAAGCAAGCTCCCTGGGTGATT---------CACCACCAGGGCACTGACCTTTACTCTGTGTTCTCCTAGCTCC a score=3550.0 s hg17.chr13_random 61072 50 + 186858 CCATGGGGACACCATCCACGACATCACGAacgaggacgccgtccacgaca s panTro1.chr23 30090673 50 - 50034486 CCATGAAGACACCGTACACGACATCACTAACGAGGACGCCACACACGACA a score=6497.0 s hg17.chr13_random 61122 89 + 186858 ccaccgacgaggacgccgtccatggcaccgccgacgaggacgccgtccagggcatcgccgacgaggacgccgtccacggcatcgctgac s panTro1.chr23 19017257 89 + 50034486 TCGCTAACGAGGACGCCATCCAGGGCATCGCAAACGAGGACGCCGCCCAGGGCATCGCTAACGAGGAAGCCGTCCACGACATCGCTAAC a score=364.0 s hg17.chr13_random 61211 5 + 186858 TGGGA s panTro1.chr23 19017346 5 + 50034486 GAGGA s fr1.chrUn 310363848 5 + 349519338 TGGGC a score=1486.0 s hg17.chr13_random 61216 33 + 186858 CGCCATCCAGGGCCTCGCTGACAGGGACGCCGT s panTro1.chr23 19017351 33 + 50034486 CGCCGCCCAGAGCATCGATAACGAGGACGTGGT s galGal2.chrUn 143123657 33 - 165033910 CTCCATCGGTGTCATCTCCAACGGTGACATCCC s fr1.chrUn 310363853 33 + 349519338 TGCTGCTGCTGCTCACGCTGATGACATCACAGG a score=486.0 s hg17.chr13_random 61249 6 + 186858 CCACGG s panTro1.chr23 19017384 6 + 50034486 CCACTA s galGal2.chrUn 143123690 6 - 165033910 CAATGG s fr1.chrUn 310363886 6 + 349519338 CTGGGA s danRer1.chr14 31938347 6 + 34612130 CCAGTG a score=-295.0 s hg17.chr13_random 61255 27 + 186858 CTTCGCTGATGGGGACGCCGTCAAGGG s galGal2.chrUn 143123699 27 - 165033910 CATCCCCAATGGTGACATGTCCAACGT s fr1.chrUn 310363901 18 + 349519338 TGCTGCTCACGGTGATGA--------- s danRer1.chr14 31938353 27 + 34612130 CTTTGCTAATGTTAAAGTGAACCAGGT a score=-881.0 s hg17.chr13_random 61282 103 + 186858 CATCGC---TGACGGGGACGCCACCCAGGGC------------------------------------------------ATCGCTGAAGGGGACGACGTCCATGG---CATCGCTGATGGTGTCGCCGTCCAGGG---CATCGCTGACGAGGATGCAGTC s panTro1.chr23 19017390 151 + 50034486 CATCGC---TAACGAGGACGCCACCCAGGGCATCGTTAACGAGGACGCTGTCCACAATATCGAGGACGTTGTCCACAATATCGCTAACGAGGACGCCACCCATGG---CGTCGCTAACGAGGTCGCCGCCCAGGG---CGTCGCTAACGAGGACGCCGCC s galGal2.chrUn 143123729 115 - 165033910 CACCTCCCATGGCGGTGACATCTCCAATGGT---------------------------------------------GACATCTCCAACGGTGACATCTCCAATGGTGTCATCCCCAATGGTGTCACCTCCAACGGTGACATCCCCAGCGTTGTCACCTCC s fr1.chrUn 310363919 88 + 349519338 CATCAC---AGGCTGGGACGCTACT------------------------------------------------------GCTGCTCACGCTGATGACATCACAGG---CTGGGCTGCTGCTGCTGC------------TCACGCTGATGACATCACAGGC s danRer1.chr14 31938380 103 + 34612130 CTCTGC---TAATGTTAAAGTTGACCAGTTC------------------------------------------------TCTGCTAATGTTAAAGTGGTCCGGGG---CTCTGCTAATGTTAAAGTGAACCAGGC---CTCAGCTAATGTTAAAGCTGAC a score=-9515.0 s hg17.chr13_random 61385 14 + 186858 CA----------------------------------GCT--------------------CATTGCTGA s panTro1.chr23 19017541 68 + 50034486 CACGCCGTCGCTAACGAGGACGCCGCCCACGGCGTCGCTAACGAGGTCGTCATCCACGGCGTCGCTAA s galGal2.chrUn 143123844 8 - 165033910 CATGGCGG------------------------------------------------------------ s fr1.chrUn 310364007 11 + 349519338 TGGGCTGCTGC--------------------------------------------------------- a score=353.0 s hg17.chr13_random 61399 18 + 186858 TGAGGACCCCGTCCATGG s galGal2.chrUn 143123852 18 - 165033910 TGACATCTCCAACAGTGA s fr1.chrUn 310364018 18 + 349519338 TGCTGCTCACGCTGATGA a score=-439.0 s hg17.chr13_random 61417 93 + 186858 CATCACTAAAGAGGATGC---------------------CACCCAGGGCTTCGCGAACAAGGACGCTGCCCA---------GGGC------------ATCGCTAATGAGGAGGCCATCCACGGCATCCCTAACGA s panTro1.chr23 19017390 114 + 50034486 CATCGCTAACGAGGACGC---------------------CACCCAGGGCATCGTTAACGAGGACGCTGTCCACAATATCGAGGACGTTGTCCACAATATCGCTAACGAGGACGCCACCCATGGCGTCGCTAACGA s galGal2.chrUn 143123870 72 - 165033910 CATCTCCAACGGTGACGT---------------------CTCCAATGGTGTCATCTCCA---ACGGTGTC---------------------------ATCTCCAACGGTGACGTC-TCCATG-----------GA s fr1.chrUn 310364036 102 + 349519338 CATCACAGGCTGAGACCctgctgctgctgctgctgctCACGCTGATGACATCACAGGCTGAGACCCTGCT---------------------------GCTGCTGGTCACG------CTGATGACATCACAGGCTG a score=-19167.0 s hg17.chr13_random 61510 129 + 186858 GGTCGCCATC----CAGGG------CGTCGCTAACGACGACGCCGTCCAGGGCGTCACTCTCGATGACGCCGTCCAC------GGCGTTGCCGACGGGGTTGCCGTCCAGGGCTG--------CCGTCCAGGGCAGCGCTAACGATGCC----GTCC s panTro1.chr23 19017504 44 + 50034486 GGTCGCCGCC----CAGGG------CGTCGCTAACGAGGACGCCGCCCACGCCG------------------------------------------------------------------------------------------------------- s galGal2.chrUn 143123942 149 - 165033910 TGTCACCTCC----CATGGCAGTGACATCTCCAACAGTGACATCTCCAATGGTGTCATCTCCAATGGTGACATCTCCAATGGTGACATTCCCAGCGTTGTCACCTCCCATGGCAGTGACGTCTCCATCGGTGTCATCTCCAACGGTGAC----GTCT s fr1.chrUn 310364138 137 + 349519338 GGCTGCTGCT----GCTGC------TCACGCTGATGACATCACAGGCTGGGACGCTGCTGCTGCTCATGCTGATGACGTCACAGGCTGAGACGCTGCTGCTGCTGCTCACGCTGATGACATCACAGGCTGGGACGCTGCTGCTGCTC---------- s danRer1.chr14 31937820 151 + 34612130 GACCGCCACCGCTGCTGGG------CTCTGCTAATGTTACAGTGGACCAGAGCTCTGCTAAGGTTAGCGTTAACTACGGCTCTGCTAATGATGAAGTGAACTGGGTTTCTGCTGATGCTAAAGTAGACCAGGGCTCTGCTAATGTTAAAAGTGGACC a score=-13108.0 s hg17.chr13_random 61554 85 + 186858 TCACTCTCGATGACGCCG---------------------------TCCA----CGGCGTTGCC------------GACGGGGTTGCCGT--CCAGGGC--TGCCG---------------TCCAGGGCAGCGCTAACGATG---CCGTCC---- s panTro1.chr23 19017844 129 + 50034486 TCGCTACCGAGGACGCCGCCCAGGGCGTCGCTAACCAGGTCGCCGTCCA----CGGCGTCGCT------------AACGGGGACGCCGT--CCACGGC---GTCGCTAACGGGGACCCCATCCAGGGCGTCGCTAACGGGGACCCCGTCC---- s galGal2.chrUn 143123992 99 - 165033910 TCATCTCCAATGGTGACATC-------------------------TCCAATGGTGACATTCCC------------AGCGTTGTCACCTC--CCATGGCAGTGACG---------TCTCCATCGGTGTCATCTCCAACGGTG---ACGTCT---- s fr1.chrUn 310364182 84 + 349519338 CTGCTGCTGCTCATGCTG------------------------------A----TGACGTCACA------------GGCTGAGACGCTGCTGCTGCTGC--TCACG---------------CTGATGACATCACAGGCTGGG---ACGCTG---- s danRer1.chr14 31937868 103 + 34612130 CTGCTAAGGTTAGCGTTA---------------------------ACTA----CGGCTCTGCTAATGATGAAGTGAACTGGGTTTCTGC--TGATGCTAAAGTAG---------------ACCAGGGCTCTGCTAATGTTA---AAAGTGGACC a score=-136.0 s hg17.chr13_random 61639 9 + 186858 AGGGCATCG s fr1.chrUn 310364275 3 + 349519338 ------ACG s danRer1.chr14 31937971 9 + 34612130 AGGTCTCTG a score=154.0 s hg17.chr13_random 61639 6 + 186858 AGGGCA s danRer1.chr14 31937971 6 + 34612130 AGGTCT a score=273.0 s hg17.chr13_random 61645 1 + 186858 T s panTro1.chr23 19017548 1 + 50034486 T s mm5.chr9 45430545 1 + 124177049 T a score=620.0 s hg17.chr13_random 61646 2 + 186858 CG s panTro1.chr23 19017549 2 + 50034486 CG s mm5.chr9 45430546 2 + 124177049 CT s fr1.chrUn 310364276 2 + 349519338 CG s danRer1.chr14 31937978 2 + 34612130 TG a score=1993.0 s hg17.chr13_random 61648 26 + 186858 CTAACGAGGACGCCACCC---------------AGGGCATC s panTro1.chr23 19017551 26 + 50034486 CTAACGAGGACGCCGCCC---------------ACGGCGTC s mm5.chr9 45430548 41 + 124177049 CCAGCAAGGACACCTCCCCAGGCTTCCCCAGCAAGGACATC s galGal2.chrUn 143124091 23 - 165033910 CCATTGATGTCACCTCCC---------------ATGGC--- s fr1.chrUn 310364278 26 + 349519338 CTGATGACATCACAGGCT---------------GGGACACT s danRer1.chr14 31937980 26 + 34612130 ATAATGATAAAGTGAACC---------------AGGTCTCT a score=5531.0 s hg17.chr13_random 61674 56 + 186858 GCTAACGATGACGCCGTCCACGGCATCACTAACGAGGACACCGCCCAGGG---CATCGC s panTro1.chr23 19017577 56 + 50034486 GCTAACGAGGTCGTCATCCACGGCGTCGCTAACGAGGACGTCGCCTATGG---CGTCGC s mm5.chr9 45430589 56 + 124177049 TCCAGCAAGGGCACCTCCTCAGGCCTCTCCAGCAAGGACACCTCCTCAGG---CCTCTC s galGal2.chrUn 143124114 56 - 165033910 ---AGTGACATCTCCATCGGTGACATCTCCAACGGTGACATCTCCAATGGTGACATCCC s fr1.chrUn 310363788 56 + 349519338 GCTCACGCTGATGACATCACAGGCTGGGCTGCTGCTGCTCACGCTGATGA---CATCAC s danRer1.chr14 31938006 56 + 34612130 GCTAATGTTAAAGTGGACCAGGTCTCTGCTAATGTTAAAGTAGACCAGGT---CTCAGC a score=-5053.0 s hg17.chr13_random 61730 49 + 186858 CAACTGGGATGC------------CGTCCAGGA---CATCGCCAACTGGGATGCCGTCCACTGC s panTro1.chr23 17032640 49 + 50034486 CAACGAGGATGC------------CGTCCACGG---CATTGCTAACGAGGATGCCGTGCACGGC s mm5.chr9 45430645 48 + 124177049 CAACAAGGACAC------------CTCCTCAGG---CCTCTCCAGCAAGGGCACC-TCCTCCTC s galGal2.chrUn 143124170 41 - 165033910 CAATAGTGACAT------------CTCCAATGGTGACATCTCCAACAGTGACA----------- s fr1.chrUn 310363844 60 + 349519338 AGGCTGGGCTGCTGCTGCTGCTCACGCTGATGA---CATCACAGGCTGGGAGGCT-GCTGCTGC s danRer1.chr14 31938062 49 + 34612130 TAATGTTAAAGT------------GGACCAGGT---CTCAGCTAATGGTAAAGTGAACCAGTGC a score=273.0 s hg17.chr13_random 61779 1 + 186858 A s panTro1.chr23 17032689 1 + 50034486 A s mm5.chr9 45430693 1 + 124177049 A a score=-369.0 s hg17.chr13_random 61779 2 + 186858 AT- s danRer1.chr14 31938111 2 + 34612130 -TT a score=273.0 s hg17.chr13_random 61780 1 + 186858 T s panTro1.chr23 17032690 1 + 50034486 T s galGal2.chrUn 143124211 1 - 165033910 T a score=91.0 s hg17.chr13_random 61780 1 + 186858 T s galGal2.chrUn 143124211 1 - 165033910 T a score=557.0 s hg17.chr13_random 61781 9 + 186858 CGCTAACGA-- s panTro1.chr23 17032691 9 + 50034486 CACTAATGA-- s galGal2.chrUn 143124212 9 - 165033910 CTCCATTGA-- s fr1.chrUn 310363904 9 + 349519338 TGCTCACGG-- s danRer1.chr14 31938113 11 + 34612130 TGCTAATGTTA a score=-720.0 s hg17.chr13_random 61781 13 + 186858 CGCTAACGAAGAT-- s galGal2.chrUn 143124212 13 - 165033910 CTCCATTGATGTC-- s fr1.chrUn 310363904 13 + 349519338 TGCTCACGGTGAT-- s danRer1.chr14 31938113 15 + 34612130 TGCTAATGTTAAAGT a score=-384.0 s hg17.chr13_random 61794 3 + 186858 GGA s mm5.chr9 45430694 3 + 124177049 GGC s galGal2.chrUn 143124225 3 - 165033910 ACC s danRer1.chr14 31938128 3 + 34612130 GAA a score=160.0 s hg17.chr13_random 61794 3 + 186858 GGA s danRer1.chr14 31938128 3 + 34612130 GAA a score=-834.0 s hg17.chr13_random 61797 29 + 186858 TTCCACGGCATCGATAACGAGGACGCTGT s mm5.chr9 45430697 8 + 124177049 TTCCCCAG--------------------- s galGal2.chrUn 143124228 29 - 165033910 TCCCATGGCGGTGACATCTCCAATGGTGT a score=0.0 s hg17.chr13_random 61797 50 + 186858 TTCCACGGCATCGATAACGAGGACGCTGTccagggcatcgccgactggga a score=707.0 s hg17.chr13_random 61817 9 + 186858 GGACGCTGT s panTro1.chr23 19017693 9 + 50034486 GGACGCCGC s galGal2.chrUn 143124248 9 - 165033910 CAATGGTGT a score=1341.0 s hg17.chr13_random 61826 21 + 186858 ---------ccagggcatcgc---cgactggga s panTro1.chr23 19017702 21 + 50034486 ---------CCAGGGCATCGCACACGA---GGA s mm5.chr9 45430705 21 + 124177049 ---------CCCGGGCATCTC---CAGCCCGGG s galGal2.chrUn 143124257 30 - 165033910 CATCTCCAACAGTGACATCTC---CAACGGTGA a score=-7592.0 s hg17.chr13_random 61847 10 + 186858 cgcc----------------------gcccag s panTro1.chr23 19017723 9 + 50034486 CGCC----------------------GCC-AG s mm5.chr9 45430726 13 + 124177049 CATCTC------------------TAGCC-AG s galGal2.chrUn 143124287 31 - 165033910 CGTCTCCATTGATGTCACCTCCCATGGCA-GT s danRer1.chr14 31937823 14 + 34612130 CGCCACCGCTGCTG------------------ a score=126.0 s hg17.chr13_random 61847 10 + 186858 cgccgcc----cag s danRer1.chr14 31937823 14 + 34612130 CGCCACCGCTGCTG a score=314.0 s hg17.chr13_random 61857 36 + 186858 ggcatcgccgacggggtcgccgcc---cagggcatcgcT s panTro1.chr23 19017732 36 + 50034486 GGCATCGCTAACGAGGTCGCCGTC---CACGGCATCGCT s mm5.chr9 45430739 39 + 124177049 GGCACCACCTTCCAGGTCATCATCGGGCAGATCATCATC s galGal2.chrUn 143124318 36 - 165033910 GACATCTCCAACAGTGACATCTCC---AATGCTGACATC s fr1.chrUn 310363917 30 + 349519338 GACATCACAGGCTGGGACGCTACT---GCTGCT------ s danRer1.chr14 31937837 36 + 34612130 GGCTCTGCTAATGTTACAGTGGAC---CAGAGCTCTGCT a score=-9822.0 s hg17.chr13_random 61893 69 + 186858 C----TCGATGATGCCGTCCACGGCA---TTGCTAATAAGGACGCCGC---CCAGGGCATCGCCAACTGGGATGCTGTC s panTro1.chr23 19017441 73 + 50034486 CAATATCGAGGACGTTGTCCACAATA---TCGCTAACGAGGACGCCAC---CCATGGCGTCGCTAACGAGGTCGCCGCC s mm5.chr9 45430778 73 + 124177049 ----TGCCAGGTCAGCCTCCACGACATCCTCCCCAACGAGAGTGTACCTTGTTAGAGCAACACCAGTGGGG--GCTGTC s galGal2.chrUn 143124354 60 - 165033910 ----TCCAATGGTGACATTCCCAGCG---TTGTCA---------CCTC---CCATGGCGGTGACATCTCCAATGGTGTC s fr1.chrUn 310363947 72 + 349519338 -CACGCTGATGACATCACAGGCTGGG---CTGCTGCTGCTGCTCACGC---TGATGACATCACAGGCTGGGCTGCTGCT s danRer1.chr14 31937873 69 + 34612130 -------AAGGTTAGCGTTAACTACGGCTCTGCTAATGATGAAGTGAA---CTGGGTTTCTGCTGATGCTAAAGTAGAC a score=300.0 s hg17.chr13_random 61962 1 + 186858 C s panTro1.chr23 19017514 1 + 50034486 C s mm5.chr9 45430851 1 + 124177049 C a score=460.0 s hg17.chr13_random 61962 6 + 186858 CAGGAC s danRer1.chr14 31937942 6 + 34612130 CAGGGC a score=1211.0 s hg17.chr13_random 61963 5 + 186858 AGGAC s panTro1.chr23 19017515 5 + 50034486 AGGGC s danRer1.chr14 31937943 5 + 34612130 AGGGC a score=918.0 s hg17.chr13_random 61968 15 + 186858 ATCGCTAACGAAGAT--- s panTro1.chr23 19017520 15 + 50034486 GTCGCTAACGAGGAC--- s galGal2.chrUn 143124414 15 - 165033910 ATCTCCAACGGTGAC--- s danRer1.chr14 31937948 18 + 34612130 TCTGCTAATGTTAAAAGT a score=-227.0 s hg17.chr13_random 61983 3 + 186858 GGA s galGal2.chrUn 143124429 3 - 165033910 ATC s danRer1.chr14 31937966 3 + 34612130 GGA a score=60.0 s hg17.chr13_random 61986 2 + 186858 TT s galGal2.chrUn 143124432 2 - 165033910 TC a score=-1016.0 s hg17.chr13_random 61988 12 + 186858 CCACGG---CATCGA s galGal2.chrUn 143124434 15 - 165033910 CAATGGTGACATGCC s danRer1.chr14 31937969 12 + 34612130 CCAGGT---CTCTGA a score=4272.0 s hg17.chr13_random 62000 31 + 186858 TAACGAGGACGCCGTCCAGGGCATCGCCAAC s panTro1.chr23 19017633 31 + 50034486 TAACGAGGATGCCGCCCAGGGCATCGCAAAC s galGal2.chrUn 143124449 31 - 165033910 CAGCGTTGTCACCTCCCATGACGTTGACATC s danRer1.chr14 31937981 31 + 34612130 TAATGATAAAGTGAACCAGGTCTCTGCTAAT a score=-1234.0 s hg17.chr13_random 62031 8 + 186858 --TGGGACGT s galGal2.chrUn 143124480 8 - 165033910 --TCCAATGG s danRer1.chr14 31938012 8 + 34612130 GTTAAAGT-- a score=-847.0 s hg17.chr13_random 62039 27 + 186858 CGTCCAGGGCATCGCCAACTGGGACAC s galGal2.chrUn 143124488 21 - 165033910 TGTC------ATCTCCAACAGTGACAT s fr1.chrUn 310364027 27 + 349519338 CGCTGATGACATCACAGGCTGAGACCc s danRer1.chr14 31938020 27 + 34612130 GGACCAGGTCTCTGCTAATGTTAAAGT a score=-127.0 s hg17.chr13_random 62066 12 + 186858 CGTCCACAGCTT s galGal2.chrUn 143124509 12 - 165033910 CTCCAACGGCGT s danRer1.chr14 31938047 12 + 34612130 AGACCAGGTCTC a score=-3209.0 s hg17.chr13_random 62078 41 + 186858 CG------CCGACGGGGTAGCCTTCCACGG---CATCGCCGACGGGGACG s galGal2.chrUn 143124521 50 - 165033910 TGACATCTCCAACGGTGACATCTCCAATGGTGACATCTCCAACGGTGACG s fr1.chrUn 310364075 26 + 349519338 ---------------------CGCTGATGA---CATCACAGGCTGAGACC s danRer1.chr14 31938059 41 + 34612130 ------AGCTAATGTTAAAGTGGACCAGGT---CTCAGCTAATGGTAAAG a score=-2978.0 s hg17.chr13_random 62119 47 + 186858 CCGTCCAGGGCATCGCTCTCGATGACG------CCGTCCACGGCATCGCTAAT s mm5.chr5 36655693 47 + 149219885 CCAGCCATAGCATCCCCTAAGATCATC------CCAGCCACAGCATCCCCTAA s galGal2.chrUn 143124574 53 - 165033910 CCATTGATGTCACCTCCCATGGCAGTGACATCTCCATCGGTGACATCTCCAAT s fr1.chrUn 310364101 35 + 349519338 ------------CTGCTGCTGCTGGTC------ACGCTGATGACATCACAGGC s danRer1.chr14 31938100 47 + 34612130 TGAACCAGTGCTTTGCTAATGTTAAAG------TGAACCAGGTCTCAGCTAAT a score=754.0 s hg17.chr13_random 62166 9 + 186858 GAGGATGCT s panTro1.chr23 19017664 9 + 50034486 GAGGATGCC s mm5.chr5 36655740 9 + 149219885 GATCATCCC s galGal2.chrUn 143124627 9 - 165033910 GGTGACATC s fr1.chrUn 310364145 9 + 349519338 GCTGCTGCT s danRer1.chr14 31938147 9 + 34612130 GGTAAAGTG a score=2288.0 s hg17.chr13_random 62175 10 + 186858 GCCCAGGGCA s panTro1.chr23 19017673 10 + 50034486 GCCCAGGGCA s mm5.chr5 36655749 10 + 149219885 AGCCACAGCA s galGal2.chrUn 143124636 10 - 165033910 TCCAACGGCG s danRer1.chr14 31938156 10 + 34612130 AACCAGTGCT a score=-5103.0 s hg17.chr13_random 62185 46 + 186858 TCGCCAACTGGGATGCTGTCCAGGACATCGCTAACGAAGATGGATT s panTro1.chr23 19017683 7 + 50034486 TCGCTAA--------------------------------------- s mm5.chr5 36655759 46 + 149219885 TCCCCTAAGATCATCCCACCCATGGCATCCCCTAAGATCATCCCAG s danRer1.chr14 31938166 46 + 34612130 TTGCTAATGTTAAAGTGAACCAGGTCTCTGCTAGTGTTTAAGTGGA a score=-3435.0 s hg17.chr13_random 62231 22 + 186858 CCACGGCATCGATATCGAGGAC- s panTro1.chr23 19017690 7 + 50034486 ---------------GGAGGAC- s mm5.chr5 36655805 22 + 149219885 CCACAGCATCCCCTAAGATCAT- s galGal2.chrUn 21908737 22 + 165033910 CCGCGCCACCGCCAAACGGGAC- s danRer1.chr14 31938212 22 + 34612130 -CCAGGTATCTGCTAATGTTAAA a score=-21205.0 s hg17.chr13_random 62253 80 + 186858 GCCGCCCAGGGCATCGATAACGAGGACGCC------TTCCAGGGCATCGC-CAACAGGGAAGCCTTCCAC-----------GGCATCGCCGACGGGGA s panTro1.chr23 19017697 52 + 50034486 GCCGCCCAGGGCATCGCACACGAGGACGCC-------GCCAGGGCATCGC-TA--------------------------------------ACGAGGT s mm5.chr5 36655827 80 + 149219885 CCCACCCATGGCATCCCCTAAGATCATCCC------AGCCATAGCATCCC-CTAAGATCATCCCAGCCAC-----------AGCATCCCCTAAGGGCA s galGal2.chrUn 21908759 85 + 165033910 GCCAACTCGGGGAGGGCGCGGGAC-------------GCCACGGGGTCGCACAGCCACGGACCCATCAGCCCCACTTTGAAGGTGGCCCCGCCGGTCg s fr1.chrUn 28250853 76 - 349519338 GCTGCGTTTGACATCTTCATCCAGGACGCAGAAGATGGCTGCATCAGCAC-CAAAGAGCT---------------------GGGGAAGGTGATGAGGA s danRer1.chr14 31938234 80 + 34612130 GTTGACCAGTTCTCTGCTAATGTTAAAGTG------GACCAGGTCTCAGC-TAATGGTAAAGTGAACCAG-----------TGCTTTGCTAATGTTAA a score=-1233.0 s hg17.chr13_random 62333 51 + 186858 CGCC-GTCCAGGGCATCGCCGACGGGGTCGCCGTCCACGGCATCGCTGACGG s panTro1.chr23 19017749 51 + 50034486 CGCC-GTCCACGGCATCGCTAACGAGGTCGCCGTCCACGGCGTCGTTAAAGA s mm5.chr5 36655907 51 + 149219885 TCCC-AGCCACAGAATCCCCTAAGGGCATCCCAGCCACAGCATTCCTAACAG s galGal2.chrUn 21909012 51 + 165033910 CGCT-GCTGGAGATGTCACCGCTGGGGGGGACATCAGTGGAGATGTCAGCGT s fr1.chrUn 28250929 49 - 349519338 TGCTGGGCCAGAACCCCACCCCCGAGGAGC---TGCAGGAGATGATCGACGA s danRer1.chr14 31938314 51 + 34612130 AGTG-AACCAGGTCTCAGCTAATGGTAAAGTGAACCAGTGCTTTGCTAATGT a score=-22511.0 s hg17.chr13_random 62384 150 + 186858 GGTTGTCGTCCA---------CGGCATCGCCGACTGGG---ACGCCGCCCAGGGCATCGCCGACGGGGACGCCGTCC------ACGGCATCGCTGACGAGGAAGCCGCCCAGGGCATCGCCAACTGGGATGCTGTCCAGGACATCAATAACGAAGATGGATTCCACGG s panTro1.chr23 19017800 96 + 50034486 GGTT---------------------------------------GCCGCCCAGGGCATCGCGAACGAGGACGCCGCCC------AGGGCGTCGCTACCGAGGACGCCGCCCAGGGCGTCGCTAACCAGGTCGCCGTCCA---------------------------CGG s galGal2.chrUn 21909069 161 + 165033910 AGGTGACATCAGTGGAGATGTCAGCGTCATGGGAGGTG---ACAACGCTGGGGATGTCACCGTTGGAGGTGACACCATTGGGGATGACACCGTTGGAGATGACACCGTTGGAGATGTCACCGTTGGAGATGTCACCAC---CATGGGAGGTGACAACGTTGGACATG- s fr1.chrUn 28250978 138 - 349519338 GGTGGACGAGGA---------CGGTACGA--GCACGTC---ACGACACGCACG-CGCAGCAGGCGCGCCCGGCGCTG------ACGGGCTGGTTTCTGTCGGC--------AGGCAGCGGCACGGTGGACTTCGATGA-GTTCTTGGTGATGATGGTGCGCTGCATGA s danRer1.chr14 31938365 150 + 34612130 ---TAAAGTGAA---------CCAGGTCTCTGCTAATGTTAAAGTTGACCAGTTCTCTGCTAATGTTAAAGTGGTCC------GGGGCTCTGCTAATGTTAAAGTGAACCAGGCCTCAGCTAATGTTAAAGCTGACCAGTTCTCTGCTAATGTTAAAGTGGTCCGGGG a score=32.0 s hg17.chr13_random 62534 2 + 186858 CA s panTro1.chr23 19017896 2 + 50034486 CG s danRer1.chr14 31938515 2 + 34612130 CT a score=335.0 s hg17.chr13_random 62534 11 + 186858 CATCGCCAACG s danRer1.chr14 31938515 11 + 34612130 CTCTGCTAATG a score=3133.0 s hg17.chr13_random 62536 9 + 186858 TCGCCAACG s panTro1.chr23 19017898 9 + 50034486 TCGCTAACG s mm5.chr9 45430545 9 + 124177049 TCTCCAGCA s galGal2.chrUn 21909230 9 + 165033910 TCACCATTG s danRer1.chr14 31938517 9 + 34612130 CTGCTAATG a score=-14967.0 s hg17.chr13_random 62545 85 + 186858 AGGACGCCACCCAGGG------CATCGCCGACGGGGA---CGCCGCCCAGGGCATCGCCGACGGGGACGCCGTCCAGGGCATCGCC----GACTGGGA s panTro1.chr23 19017907 85 + 50034486 GGGACGCCGTCCACGG------CGTCGCTAACGGGGA---CCCCATCCAGGGCGTCGCTAACGGGGACCCCGTCCAGGGCGTCGCTA-AGGA---GGA s mm5.chr9 45430554 73 + 124177049 AGGACACCTCCCCAGG------CTTCCCCAGCA---------------AGGACATCTCCAGCAAGGGCACCTCCTCAGGCCTCTCCA-GCAA---GGA s galGal2.chrUn 21909239 83 + 165033910 GAGATGTCACCGTTGGAGATGTCATCGCCGTTGGAGATGTCACCATTGGAGATGTCACCGATGGAGAT---------GTCACTGCCATGGGA------ s fr1.chrUn 28251116 67 - 349519338 AGGAGGAGAGCAAAGG------GAAGGCCGAGGAGGA-------------------GCTGGCAGAGCTGTTCCGCATGT--TTGACA-AGTA---GGT s danRer1.chr14 31938526 85 + 34612130 TTAAAGTGGTCCGGGG------CTCTGCTAATGTTAA---AGTGAACCAGGTCTCAGCTAATGTTAAAGCTGACCAGTTCTCTGCTA-ATGT---TAA a score=-494.0 s hg17.chr13_random 62630 44 + 186858 CACAGTCCACGGCTTCGCCAA----CAGGGTCGCCATCCACGGCTTCG- s panTro1.chr23 19017992 44 + 50034486 CGCCGTCCAGGGCGTCGCTAA----AGAGGTCGCCGCCCACGGCGTCG- s mm5.chr9 45430627 44 + 124177049 CACCTCCTCAGGCCTCTCCAA----CAAGGACACCTCCTCAGGCCTCT- s fr1.chrUn 28251183 48 - 349519338 TGGACCTCCTGTCCACGCCGAGACGCAGAGTCACTGAGCACGAGTCCA- s danRer1.chr14 31938611 44 + 34612130 AGTGGTCCGGGGCTCTGCTAATGTTAAAGTGAACCA-----GGCCTCAG a score=-23721.0 s hg17.chr13_random 62674 93 + 186858 CCAACAG-GGTCGCCTTCCAC---AGCATCGCCAAC----GGGGT-GCCGTCCAGGGCATCGCTAACGAGGAGGCCGTCCACGGCATCCCT------------GAGGTCGCCGT s panTro1.chr23 19018036 97 + 50034486 CTAACGA-GGATGCCGCCCAC---GGCGTCGCTAAC----GAGGTCGCCGTCCAGGGCGTCGCTAACGAGGACGCCGCCCATGGCGTCACTAA---------CGAGGTCGCCGC s mm5.chr9 45430671 91 + 124177049 CCAGCAA-GGGCACCTCCTCCTCAGGCTTCCCCAGC-CCGGGCATCTCCAGCCCGGGCATCTCTAGCCAGGGCACCACCTTC---------------------CAGGTCATCAT s galGal2.chrUn 21908639 94 + 165033910 CCAGCAG-AGCC------------GTCACCGCCTGC----GGGGT-GTGG--CAGGGTTCCGGGAGCAGCACGGCGTCCCACCAATTAACCCCGGCTCAGTTCCGGGTCCCGGT s fr1.chrUn 28251233 87 - 349519338 -CAGTGACGGGCGCCG--------GGCGCTTTCTCCTTCAGGAAT-TCTGACGGATACATCGACTTAGAGGA----GCTCAAGGCCATGCT------------GGAGTCCACA- s danRer1.chr14 31938655 67 + 34612130 -------------------------------CTAAT----GTTAAAGTGGACCAGGTCTCAGCTAATGGTAAAGTGAACCAGTGCTTTGCT------------AATGTTAAAGT a score=-10152.0 s hg17.chr13_random 62767 39 + 186858 C----CAGAGCATCGCTAACGAGGACGCCGTCC-----A--GGGCA---TCGC- s panTro1.chr23 19018133 39 + 50034486 C----CAGGGCGTCGCTAACGAGGACGCCGTCC-----ACGGGGC-----CGC- s mm5.chr9 45430762 45 + 124177049 CGGG-CAGATCATCATCTGCCAGGTCAGCCTCC-----A--CGACATCCTCCC- s galGal2.chrUn 21908733 43 + 165033910 TGAGCCGCGCCACCGCCAAACGGGACGCCAACTCGGGGA--GGGC--------- s fr1.chrUn 28251320 37 - 349519338 -----GGAGAGACCATCACCGAGGACGACATCG-----A--GGAG----TTGA- s danRer1.chr14 31937969 39 + 34612130 ----CCAGGTCTCTGATAATGATAAAGTGAACC-----A--GGTC----TCTGC a score=-33.0 s hg17.chr13_random 62806 7 + 186858 TAACGAA s fr1.chrUn 28251361 7 - 349519338 GGACGGG s danRer1.chr14 31938008 7 + 34612130 TAATGTT a score=2218.0 s hg17.chr13_random 62806 6 + 186858 TAACGA s panTro1.chr23 19018172 6 + 50034486 TAACGA s mm5.chr9 45430807 6 + 124177049 CAACGA s fr1.chrUn 28251361 6 - 349519338 GGACGG s danRer1.chr14 31938008 6 + 34612130 TAATGT a score=-31.0 s hg17.chr13_random 62812 1 + 186858 A s mm5.chr9 45430813 1 + 124177049 G a score=-20433.0 s hg17.chr13_random 62813 68 + 186858 --GATGGAGT---CCACGGCATCGA-TAACGAGGA----CACCATCCAGGGCCTC-------GCCGACGTGGACGCCG-------TCCACGG s mm5.chr9 45430814 67 + 124177049 --AGTGTACCTTGTTAGAGCAACAC-CAGTGGGGGCTGTCCCCATCC-GGGCATC-------TCCTGCCAGGTCAGCA-------------- s galGal2.chrUn 21908776 68 + 165033910 --GCGGGACG---CCACGGGGTCGCACAGCCACGG----ACCCATCA-GCCCCAC-------TTTGAAGGTGGCCCCG-------CCGGTCg s fr1.chrUn 28251368 77 - 349519338 --GACAAAAACAATGACGGAAAAAT-TGATTATGA----CGGTACGT-CGGCGTC-------TCCAACAAGGATTCCTGGAAAGATTAACAG s danRer1.chr14 31938015 68 + 34612130 AAAGTGGA-----CCAGGTCTCTGC-TAATGTTAA----AGTAGACC-AGGTCTCAGCTAATGTTAAAGTGGACCAGG-------T------ a score=-6869.0 s hg17.chr13_random 62881 39 + 186858 CCTCGCCGACGGGG------TCGCCGTCCACGGCCTTGGCGAT---GG s mm5.chr9 45430881 38 + 124177049 -CCAGCCACCAGGG------CCACCAGGGAGAGCCCAGGTAAG---GG s galGal2.chrUn 21909012 42 + 165033910 ---CGCTGCTGGAGATGTCACCGCTGGGGGGGACATCAGTGGA---GA s fr1.chrUn 28251445 44 - 349519338 --CTGCTTCCACAG--GTCACAGCCCAAATCAGCATAAATCAGCCTGG s danRer1.chr14 31938083 39 + 34612130 CTCAGCTAATGGTA------AAGTGAACCAGTGCTTTGCTAAT---GT a score=-4102.0 s hg17.chr13_random 62920 18 + 186858 GGTCGCCG---------------TCCAGGGCAG s panTro1.chr23 19018178 18 + 50034486 GGTCGCCG---------------TACAGGGCGT s mm5.chr9 45430919 33 + 124177049 GGCCGCTGCAGGGAGGGCAGAGATCCAGGGCAG s galGal2.chrUn 21909054 18 + 165033910 TGTCAGCG---------------TCATGGGAGG s fr1.chrUn 28251514 18 - 349519338 Gatcagca---------------ttagcatcag s danRer1.chr14 31938122 18 + 34612130 ---------------TAAAGTGAACCAGGTCTC a score=-556.0 s hg17.chr13_random 62938 48 + 186858 CGCTAACGAGGACGC---CGTCCAGGGCATCGCTAACGAGGACGCCGTCCA s panTro1.chr23 19018196 48 + 50034486 CGTTTacgaggacgc---cctccacggcgtcgctaatgaggacgccgccga s galGal2.chrUn 21909075 45 + 165033910 CATCAGTGGAGATG------TCAGCGTCATGGGAGGTGACAACGCTGGGGA s fr1.chrUn 28251532 51 - 349519338 cattagcatcagcgttagcattagcatcagcgttagcatGAGCGTTGTCCT s danRer1.chr14 31938140 48 + 34612130 AGCTAATGGTAAAGT---GAACCAGTGCTTTGCTAATGTTAAAGTGAACCA a score=350.0 s hg17.chr13_random 62986 8 + 186858 GGGCATCG s panTro1.chr23 19018244 8 + 50034486 cagcgtcg s galGal2.chrUn 21909120 8 + 165033910 TGTCACCG s fr1.chrUn 28251583 8 - 349519338 TAAAATCA s danRer1.chr14 31937836 8 + 34612130 GGGCTCTG a score=1069.0 s hg17.chr13_random 62994 7 + 186858 CTAACGA s panTro1.chr23 19018252 7 + 50034486 ctaacga s galGal2.chrUn 21909128 7 + 165033910 TTGGAGG s danRer1.chr14 31937844 7 + 34612130 CTAATGT a score=-154.0 s hg17.chr13_random 62994 9 + 186858 CTAACGACG s fr1.chrUn 28251591 1 - 349519338 --------G s danRer1.chr14 31937844 9 + 34612130 CTAATGTTA a score=67.0 s hg17.chr13_random 63001 2 + 186858 CG s galGal2.chrUn 21909138 2 + 165033910 CA s danRer1.chr14 31937851 2 + 34612130 TA a score=-1281.0 s hg17.chr13_random 63003 82 + 186858 ---CCGTCCAGGGCATCGCTAACGAGGACGCCATCCACGGTATTGCTAACGAGGATGCCGCCCAGTGCATCGCCAACTGGGATGC s panTro1.chr23 19018291 82 + 50034486 ---ccgcccacggcgtcgctaaggaggacgccgcccacggcgtcgctaacgaggacgccgCCCAGGGCGTCGCTACCGAGGATGT s galGal2.chrUn 21909143 73 + 165033910 ---TTGGGGATGACACCGTTGGAGATGACACCGTTGGAGATGTCACCGTTGGAGATGTCAC---------CACCATGGGAGGTGA s fr1.chrUn 28251594 69 - 349519338 ---TTCTGTGTGACAGAGTTCCTG--GATTTCATGAAAGGTGTTG--AATAAAAGCTCAAC---------CGTCTCCTGGATCCT s danRer1.chr14 31937853 70 + 34612130 CAGTGGACCAGAGCTCTGCTAAGGTTAGCGTTAACTACGGCTCTGCTAATGATGA---------------AGTGAACTGGGTTTC a score=-20248.0 s hg17.chr13_random 63085 86 + 186858 CGTC-CAGGAC----------ATCGCCAACTGGGATGCCGTCCAGTGCATTGCTAACG---AAGATGGA---TTCCACAGCATCGATAACAAGGACGCCGCCC s panTro1.chr23 19018373 59 + 50034486 CGCC----GACCTC-------ATCGCTAACGAGGACGCCG---------------------------------TCCACGGCATCGCTAAGGAGGACGCCGCCC s galGal2.chrUn 21909216 41 + 165033910 CAACGTTGGACAT--------GTCACCATTGGAGATGTCA------------------------------------------CCGTTGGAG------------ s fr1.chrUn 28251663 81 - 349519338 CGCC----AACGCCAGCGGCTTTCACCTGTGTGGACGTCC------CCACAGGTGATG---GTGTGGAC---GTCCCCATCACCTGTGTGGACGTCC------ s danRer1.chr14 31938209 86 + 34612130 -------GGACCAGGTA----TCTGCTAATGTTAAAGTTGACCAGTTCTCTGCTAATGTTAAAGTGGACCAGGTCTCAGCTAATGGTAAAGTGAACC------ a score=-3971.0 s hg17.chr13_random 63171 121 + 186858 AGGGCATC-----GCCGACGGAGACGCCGCCCAGGG---CATcgccgacggggacgccgccca------gggcatcgccgacggggacgccgcccaggg---catcgccgacggggacgccgcccagggcatcgccga s panTro1.chr23 19018432 117 + 50034486 ACGCGATCGCTAAGCCG-----GACGCCGCCCGCGG---CATCACTAACGAGGACGCCAC----------GGCATCGCTAACGAGGTCGCCGCCCACGG---CGTCGCTAAGGAGGATGCCGCCCACAGCGTCGCTGA s galGal2.chrUn 143124646 133 - 165033910 ATGACATC-----TCCAACGGTGACATCTCCAATGGTGACATGTCCAACGTTGTCACCTCCCATGGTGGTGACATCTCCAACGGTGACATCTCCAACGGTGTCATCTCCAACGGTGTCATCCCCAATGGTGTCACCTC s fr1.chrUn 28251744 108 - 349519338 ACACCATC-----ACCTGTGTGGACGTCCACACCAGCAACTGTGTGGACGTTCACACCAT-----------ACACCGT--GTGGGGACGTTGC---------CATCACCTGCGGGGACGT---CCACCCCATCACCTG s danRer1.chr14 31938295 121 + 34612130 AGTGCTTT-----GCTAATGTTAAAGTGAACCAGGT---CTCAGCTAATGGTAAAGTGAACCA------GTGCTTTGCTAATGTTAAAGTGAACCAGGT---CTCTGCTAATGTTAAAGTTGACCAGTTCTCTGCTAA a score=-5584.0 s hg17.chr13_random 63292 81 + 186858 cggggacgccgTCCAGGGATTCACTGACTGGGACGCCGTCCAGGGCCTCGCTGACAGGGACGCCGTCCACGGATTCGCTGA s galGal2.chrUn 143124782 72 - 165033910 CGGTGACATCCCCAGCGTTGTCACCTCCCATGACGCTGAC---ATCTCCACTGAT---GTCACCTCCCATGA---CGCTGA s fr1.chrUn 28251852 69 - 349519338 CGTGGACGTCCACACCA---TCACCTGCGGGGACGTCCAC---ACCATCACCTGCGGGGACGTCACCATCAC-----CTG- s danRer1.chr14 31938416 81 + 34612130 TGTTAAAGTGGTCCGGGGCTCTGCTAATGTTAAAGTGAACCAGGCCTCAGCTAATGTTAAAGCTGACCAGTTCTCTGCTAA a score=1034.0 s hg17.chr13_random 63373 41 + 186858 CAGGC----ACGCCGTCCATGGCTTCGCTGACGGGGACGCCGTCA s panTro1.chr23 19018574 40 + 50034486 CAGG-----ACGCCGTCCACGGCGTCGCTAACGAGGACGCCGTCC s galGal2.chrUn 143124854 38 - 165033910 CA-------TCTCCACTGATGTCCCCCCCAGCGGTGACATCTCCA s fr1.chrUn 28251921 38 - 349519338 CGGG-------GACGTCCACACCATCACCTGTGGGGGCGTCCCCA s danRer1.chr14 31938497 41 + 34612130 ----TGTTAAAGTGGTCCGGGGCTCTGCTAATGTTAAAGTGGTCC a score=861.0 s hg17.chr13_random 63414 6 + 186858 AGGGCA s panTro1.chr23 19018614 6 + 50034486 ACGGCG s galGal2.chrUn 143124892 6 - 165033910 GCAGCG s danRer1.chr14 31938538 6 + 34612130 GGGGCT a score=246.0 s hg17.chr13_random 63414 6 + 186858 AGGGCA s danRer1.chr14 31938538 6 + 34612130 GGGGCT a score=-372.0 s hg17.chr13_random 63420 69 + 186858 TCGCTGACGGGGACTCCGCCCAGGGCATCGCTGACGGGGATGCCGTCCACGGCATCGCTGATGGTGTCG s panTro1.chr23 19018620 69 + 50034486 TCGCTAACGAGGTCGCCGCCCAGGGCGTCGCTAACGAGGTCGCCGTCCACGGCGTCGCTAACGAGGACG s galGal2.chrUn 143125066 60 - 165033910 cGACCGGCGGGGCCACC-TTCAAAGTGGGGCTGATGG-------GTCCGTGGCTGTGC-GACCCCGTGG s fr1.chrUn 28251959 57 - 349519338 TCACCTGTGGGGACGTC------ACCATCACCTGCGGGGAC---GTCCACCCCATCAC---CTGTGTGG s danRer1.chr14 31938544 69 + 34612130 CTGCTAATGTTAAAGTGAACCAGGTCTCAGCTAATGTTAAAGCTGACCAGTTCTCTGCTAATGTTAAAG a score=-1343.0 s hg17.chr13_random 63489 28 + 186858 CCGTCCAGGGCATCGCTGACGA---CGCCGT s panTro1.chr23 19018689 31 + 50034486 CCGTCCAGGGCGTCGCTAAAGAGGTCGCCGC s mm5.chr5 36655693 31 + 149219885 CCAGCCATAGCATCCCCTAAGATCATCCCAG s galGal2.chrUn 143125126 21 - 165033910 -CGTCCCGCGCCCTCCCCGAGT--------- s fr1.chrUn 28252016 28 - 349519338 ACGTCCACACCATCACCTGCGG---GGACGT s danRer1.chr14 31938613 28 + 34612130 TGGTCCGGGGCTCTGCTAATGT---TAAAGT a score=-1103.0 s hg17.chr13_random 63517 51 + 186858 CCAGGGCATCGC---TGATGAGGACTCCGTCCA--GGGCATCGCT---GACGACGCCG---T s panTro1.chr23 19018720 54 + 50034486 CCACGGCGTCGC---TAACGAGGACGCCGCCCA--CGGCGTCGCT---AACGAGGTCGAAGT s mm5.chr5 36655724 54 + 149219885 CCACAGCATCCC---CTAAGATCATCCCAGCCA--CAGCATCCCCTAAGATCATCCCA---C s galGal2.chrUn 143125147 52 - 165033910 ---TGGCGTCCCGTTTGGCGGTGGCGCGGCTCAACCGGGACCCGG---AACTGAGCCG---- s fr1.chrUn 28252044 45 - 349519338 CCACACCATCAC---CTGTGGGGACGT--------CACCATCACC---TGCGGGGACG---T a score=1938.0 s hg17.chr13_random 63568 4 + 186858 CCAG s panTro1.chr23 19018774 4 + 50034486 CTAG s mm5.chr5 36655778 4 + 149219885 CCAT s fr1.chrUn 28252089 4 - 349519338 CCAC s danRer1.chr14 31938644 4 + 34612130 CCAG a score=423.0 s hg17.chr13_random 63572 5 + 186858 GGCAT- s panTro1.chr23 19018778 5 + 50034486 GGTAT- s mm5.chr5 36655782 5 + 149219885 GGCAT- s rn3.chr2 72861947 5 - 258222147 GGCAT- s galGal2.chrUn 143125199 4 - 165033910 -GGGT- s fr1.chrUn 28252093 5 - 349519338 ACCAT- s danRer1.chr14 31938648 5 + 34612130 -GCCTC a score=-1286.0 s hg17.chr13_random 63577 13 + 186858 CGCTGATGAGGAC s panTro1.chr23 19018783 13 + 50034486 CACACACAAGGAC s mm5.chr5 36655787 13 + 149219885 CCCCTAAGATCAT s rn3.chr2 72861952 13 - 258222147 GGCTGAGGAGCGC s galGal2.chrUn 143125203 13 - 165033910 TAATTGGTGGGAC s fr1.chrUn 28252098 13 - 349519338 CACCTGCGGGGAC s danRer1.chr14 31937923 13 + 34612130 TGCTGATGCTAAA a score=-897.0 s hg17.chr13_random 63590 5 + 186858 GCCGT--- s panTro1.chr23 19018796 5 + 50034486 GCCGT--- s mm5.chr5 36655800 5 + 149219885 CCCAG--- s rn3.chr2 72861965 5 - 258222147 ACGGT--- s galGal2.chrUn 143125216 5 - 165033910 GCCGT--- s danRer1.chr14 31937936 5 + 34612130 ---GTAGA a score=593.0 s hg17.chr13_random 63590 30 + 186858 GCCGTCCAGGGCATCGCTGAC-------GAGGACCAT s danRer1.chr14 31937936 37 + 34612130 GTAGACCAGGGCTCTGCTAATGTTAAAAGTGGACCAG a score=428.0 s hg17.chr13_random 63595 25 + 186858 CCAGGGCATCGCTGACGAGGACCAT------- s panTro1.chr23 19018801 25 + 50034486 CCAGGGCATCGCGAACGAGGACGCC------- s mm5.chr5 36655805 25 + 149219885 CCACAGCATCCCCTAAGATCATCCC------- s rn3.chr2 72861970 25 - 258222147 TCAGGGCACTTTGGAGGAGGACATG------- s galGal2.chrUn 21909618 25 + 165033910 AGACGTCACCGTTGGAGATGTCACT------- s danRer1.chr14 31937941 32 + 34612130 CCAGGGCTCTGCTAATGTTAAAAGTGGACCAG a score=1659.0 s hg17.chr13_random 63620 29 + 186858 GTCCATGGCATCACTAACGAGGATGCCAC s panTro1.chr23 19018826 29 + 50034486 GCCTATGGCATCACTAATGAGGACGCCGC s mm5.chr5 36655830 29 + 149219885 ACCCATGGCATCCCCTAAGATCATCCCAG s rn3.chr2 72861995 29 - 258222147 GCTCTGGGCACTTTTGGGGAGGACAAGGT s galGal2.chrUn 21909643 29 + 165033910 GTTGGAGATGACACCATTGGAGATGTCAC s fr1.chrUn 28252111 29 - 349519338 GTCCACCCCATCACCTGTGGGGACGTCAC s danRer1.chr14 31937973 23 + 34612130 GTCTCTGATAATGATAAAGTGAA------ a score=438.0 s hg17.chr13_random 63649 67 + 186858 CCAGGGCTTTGCTAACAAGGACGCCGCCCAGGGCATCACTAATGAGGACGCCGCCCAGGGCATCGCT s panTro1.chr23 19018855 67 + 50034486 CGACGGCATCGCTAAGGAGGACGCCGCCCAGAGTATCGCTGATGAGGTCGAAGTCCAGGGCATCGCA s mm5.chr5 36655859 67 + 149219885 CCATAGCATCCCCTAAGATCATCCCAGCCACAGCATCCCCTAAGGGCATCCCAGCCACAGAATCCCC s rn3.chr2 72862024 67 - 258222147 TCTGGGCACTTTGGAGGAGGACAAGGCTCTGGGCACTTTGGAGGAGGACAGGGCTCAGGACACTTCT s fr1.chrUn 28252140 52 - 349519338 ------CATCACCTGCGGGGAC---GTCCACACCATCACCTGTGGGGAC---GTCCCCATCACC--- s danRer1.chr14 31937996 67 + 34612130 CCAGGTCTCTGCTAATGTTAAAGTGGACCAGGTCTCTGCTAATGTTAAAGTAGACCAGGTCTCAGCT a score=2267.0 s hg17.chr13_random 63716 23 + 186858 AACGAGGAGGCCATCCACGGCAT s panTro1.chr23 19018922 23 + 50034486 CACGAGGACGCCATCCACGGCGT s mm5.chr5 36655926 23 + 149219885 TAAGGGCATCCCAGCCACAGCAT s fr1.chrUn 28252192 20 - 349519338 TGCGGGGA---CGTCCACACCAT s danRer1.chr14 31938063 23 + 34612130 AATGTTAAAGTGGACCAGGTCTC a score=819.0 s hg17.chr13_random 63739 7 + 186858 CCCTAAC s panTro1.chr23 19018945 7 + 50034486 CGCTAAC s mm5.chr5 36655949 7 + 149219885 TCCTAAC s galGal2.chrUn 21910122 7 + 165033910 CATTGGA s fr1.chrUn 28252212 7 - 349519338 CACCTGC s danRer1.chr14 31938086 7 + 34612130 AGCTAAT a score=1586.0 s hg17.chr13_random 63746 69 + 186858 GAGGACGCCGTCCAGGGCGTCGCTAACGAAGATGGAGTCCATGGCATTGATAACGAGGACGCCGTCCAG s panTro1.chr23 19018952 69 + 50034486 GAGGACGCCGCCGACGGCGTCGCTAACGACGATGCCGCCCACGGCGTCGCTACGGAGGATGCCGCCCAG s galGal2.chrUn 21910129 66 + 165033910 GATGTCACCGTTGGAGATGTCACCATTGGAGATGTCACC---GCCATGGGAGGTGACAACGTTGGACAT s fr1.chrUn 28252219 60 - 349519338 ---GGGGACGTCCACACCATCACCTGCGGGGA---CGTCCACCCCATCACCTGCGGGGACGTC---CAC s danRer1.chr14 31938093 69 + 34612130 GGTAAAGTGAACCAGTGCTTTGCTAATGTTAAAGTGAACCAGGTCTCAGCTAATGGTAAAGTGAACCAG a score=670.0 s hg17.chr13_random 63815 13 + 186858 GGCATCG---CCGAGG s panTro1.chr23 19019021 16 + 50034486 GGCGTCGCTACCGAGG s galGal2.chrUn 21910195 13 + 165033910 GTCACCA---TTGGGG s fr1.chrUn 28252279 13 - 349519338 CCCATCA---CCTGTG a score=-10297.0 s hg17.chr13_random 63828 48 + 186858 ACGCCATCCAGG----------GCATCACCAACTGGGACGCCGTCCAGGGCATTGC-----------CA s panTro1.chr23 19019037 59 + 50034486 ACGCCGCCCACGCGATCGATAAGCA----------GGACGCCGCCCACGGCATCGCTAAGGAGGAAACA s galGal2.chrUn 21910208 51 + 165033910 ATGTCACCATTGGGG-------ATGTCACCGTTGGAGATGACACCGATGGAGATGT-----------CA s fr1.chrUn 28252292 39 - 349519338 GAGACATCCACA----------CCATCACCTGTGTGGACATCCCCATCA-------------------- s danRer1.chr14 31938178 48 + 34612130 AAGTGAACCAGG----------TCTCTGCTAGTGTTTAAGTGGACCAGGTATCTGC-----------TA a score=902.0 s hg17.chr13_random 63876 2 + 186858 AC s panTro1.chr23 19019096 2 + 50034486 AC s galGal2.chrUn 12098105 2 - 165033910 AC s fr1.chrUn 28252331 1 - 349519338 -C s danRer1.chr14 31938226 2 + 34612130 AT a score=-1559.0 s hg17.chr13_random 63878 2 + 186858 TG- s galGal2.chrUn 12098107 2 - 165033910 GT- s fr1.chrUn 28252333 2 - 349519338 TG- s danRer1.chr14 31938228 2 + 34612130 -GT a score=-782.0 s hg17.chr13_random 63880 6 + 186858 GGACGC s panTro1.chr23 19019588 6 + 50034486 GGACGC s galGal2.chrUn 12098112 6 - 165033910 CAACGC s fr1.chrUn 28252336 5 - 349519338 GGGGG- s danRer1.chr14 31938230 6 + 34612130 TAAAGT a score=-17152.0 s hg17.chr13_random 63886 84 + 186858 CGTCCAGGACAT---CGCTAACGAAGATG--GAT-TCCACGGCATCGA-----------TAATGAGGACGCCG-------TCCAGTGCATCGCCG---------AGGACGCCGTCCA s panTro1.chr23 19019594 87 + 50034486 CGCCCACGGCGT---CGCTAAGGAGGATGCCG---CCCACAGCGTCGC-----------TAAGGAGGATGCAG-------CCCA---CACCGTCG---CTAAGCAGGACGCCGTCCA s galGal2.chrUn 12098118 87 - 165033910 CGGCATCAACATGGCCACTATGGCCAATGCCGGCGTCCGTATGATCAA-----------CGTGGCCAACGCCGG----CATCCA---TATGGCCA------------ACGCCGGCAT s fr1.chrUn 28250870 93 - 349519338 CATCCAGGACGC---------AGAAGATGGCTGCATCAGCACCAAAGAGCTGGGGAAGGTGATGAGGATGCTGGGCCAGAACCC---CACCCCCG---------AGGA-GCTG--CA s danRer1.chr14 31938236 84 + 34612130 TGACCAGTTCTC---TGCTAATGTTAAAGTGG---ACCAGGTCTCAGC-----------TAATGGTAAAGTGA-------ACCAGTGCTTTGCTAATGTTAAAGTGAA--------- a score=0.0 s hg17.chr13_random 63970 24 + 186858 GGGCATCGCCACCTGGCACGCCGT a score=875.0 s hg17.chr13_random 63970 11 + 186858 GGGCATCGCCA s panTro1.chr23 19019681 11 + 50034486 CGGCGTCGCTA s galGal2.chrUn 12098205 11 - 165033910 CAATATGGCCA s fr1.chrUn 28250963 11 - 349519338 GGAGATGATCG a score=-698.0 s hg17.chr13_random 63981 13 + 186858 CCTGGCACGCCGT s galGal2.chrUn 12098216 7 - 165033910 ------ACGCCGG s fr1.chrUn 28250974 10 - 349519338 ---ACGAGGTGGA a score=-3317.0 s hg17.chr13_random 63994 22 + 186858 CCAGGGCATCGCCA-CCTGGC--AC- s galGal2.chrUn 12098223 25 - 165033910 CGTCACCGTGACCAACCTGGCCAAC- s fr1.chrUn 28250984 23 - 349519338 CGAGGACGGTACGAGCACGTC--AC- s danRer1.chr14 31938320 22 + 34612130 CCAGGTCTCAGCTA--ATGGT--AAA a score=2198.0 s hg17.chr13_random 64016 63 + 186858 GCCGTCCAGGGCATCGCCAACTGGGACGCCGTCCA-GGGCATCGCCGACAGGG---ACGCCGTCCAT s panTro1.chr23 19019700 63 + 50034486 GCCGCCCAGGGCGTCGCTAACGAGGTCGCCGTCCA-GGGCGTCGCTAACGAGG---ACGCCGTCCAG s galGal2.chrUn 12098248 60 - 165033910 GCCGGCATCGGCATGGCCAACGTGGCCAACGTCAA-------CGTCAATATGGCCAACGCCGGCGTC s fr1.chrUn 28251024 64 - 349519338 GGCGCGCCCGGCGCTGACGGGCTGGTTTCTGTCGGCAGGCAGCGGCACGGTGG---ACTTCGATGAG s danRer1.chr14 31938342 63 + 34612130 GTGAACCAGTGCTTTGCTAATGTTAAAGTGAACCA-GGTCTCTGCTAATGTTA---AAGTTGACCAG a score=-4645.0 s hg17.chr13_random 64079 58 + 186858 GGCTTTGCTGACGGGG---ATGCCGTCCACGACTTCGCTAGCGGGGACGCCGTCAAGGGCA s panTro1.chr23 19019763 58 + 50034486 GGCGTCGCTAAAGAGG---TCGCCGCCCACGGCGTCGCTAACGAGGATGCCGCCCACGGCG s galGal2.chrUn 12098308 61 - 165033910 AGTATGGCCAATATGGCCAACGCTACCATCAATATGGCCAACAGTGGTGTTAATATGGCCA s fr1.chrUn 28251088 46 - 349519338 TTCTTGGTGATGATGGT--GCGCTGC-------------ATGAAGGAGGAGAGCAAAGGGA s danRer1.chr14 31938162 58 + 34612130 TGCTTTGCTAATGTTA---AAGTGAACCAGGTCTCTGCTAGTGTTTAAGTGGACCAGGTAT a score=422.0 s hg17.chr13_random 64137 13 + 186858 TCGCTGACGGGAA s galGal2.chrUn 12098378 13 - 165033910 ACGCTACCATCAA s fr1.chrUn 28251134 13 - 349519338 AGGCCGAGGAGGA s danRer1.chr14 31938220 13 + 34612130 CTGCTAATGTTAA a score=-787.0 s hg17.chr13_random 64150 15 + 186858 TGCCGCCCAGGGCAT s galGal2.chrUn 12098391 15 - 165033910 TATGGCCAACAGTGG s danRer1.chr14 31938233 15 + 34612130 AGTTGACCAGTTCTC a score=-21.0 s hg17.chr13_random 64150 16 + 186858 TGCCGCCCAGGGCATC s danRer1.chr14 31938233 16 + 34612130 AGTTGACCAGTTCTCT a score=100.0 s hg17.chr13_random 64165 1 + 186858 C s galGal2.chrUn 21909672 1 + 165033910 C a score=-2722.0 s hg17.chr13_random 64166 40 + 186858 GCTGATGGGGACGTCCTCCACGG------CATCGCTGACGGTGTCG s galGal2.chrUn 21909673 46 + 165033910 GCCATGGGAGGTGACATCAATGGAGATGTCACTGTTGGAGATGTCA s fr1.chrUn 28251147 34 - 349519338 GCTGGCAGAGCTGTTCCGCATGT-----------TTGACAA-GTAG s danRer1.chr14 31938249 40 + 34612130 GCTAATGTTAAAGTGGACCAGGT------CTCAGCTAATGGTAAAG a score=-1428.0 s hg17.chr13_random 64206 2 + 186858 CC- s mm5.chr5 36655693 2 + 149219885 CC- s galGal2.chrUn 21909719 2 + 165033910 CC- s fr1.chrUn 28251182 2 - 349519338 TT- s danRer1.chr14 31938289 2 + 34612130 -TG a score=-971.0 s hg17.chr13_random 64208 2 + 186858 -AT s mm5.chr5 36655695 2 + 149219885 -AG s galGal2.chrUn 21909721 2 + 165033910 -AT s danRer1.chr14 31938291 2 + 34612130 AA- a score=259.0 s hg17.chr13_random 64208 5 + 186858 ATCCA s danRer1.chr14 31938291 5 + 34612130 AACCA a score=998.0 s hg17.chr13_random 64210 3 + 186858 CCA s panTro1.chr23 19019098 3 + 50034486 CCA s mm5.chr5 36655697 3 + 149219885 CCA s galGal2.chrUn 21909723 3 + 165033910 TGG s danRer1.chr14 31938293 3 + 34612130 CCA a score=-4560.0 s hg17.chr13_random 64213 69 + 186858 GGGCATCGCTAACAAGGACGCCACCCAGGGCATCGCTAATGAGGAGGCCGTCCACAGCGTCACTAACGC s panTro1.chr23 19019101 69 + 50034486 GGGCATCGCTAACGAGGATGCCGCCCAGGGCATCGCTAACGAGGTCGCCGTCCACGGCGTCGCTATCGA s mm5.chr5 36655700 69 + 149219885 TAGCATCCCCTAAGATCATCCCAGCCACAGCATCCCCTAAGATCATCCCAGCCACAGCATCCCCTAAGA s galGal2.chrUn 21909726 60 + 165033910 AGATGTCACTATTGGGGATGTCAC---------CATTGGAGATGTCACCGTTGGAGATGTCACCGATGG s fr1.chrUn 28251184 56 - 349519338 GGACCTC-CTGTCCACGCCGAGACGCAGAGT--CACTGAGCACGAGTCCAG--GCAGTGAC-------- s danRer1.chr14 31938296 69 + 34612130 GTGCTTTGCTAATGTTAAAGTGAACCAGGTCTCAGCTAATGGTAAAGTGAACCAGTGCTTTGCTAATGT a score=-18098.0 s hg17.chr13_random 64282 57 + 186858 GGACGCCGCCCAGGGCA---TCGCCAACGAGGATGCCATCCAGGGC--------------ATCGCTAAAGA---TGA s panTro1.chr23 19019170 59 + 50034486 GGACGCCGTCCAGGGCG---TCGCTAACGAGGACGCCGTCCAGGGC--------------GTTGCTAAAGAGGTTG- s mm5.chr5 36655769 59 + 149219885 TCATCCCACCCATGGCA---TCCCCTAAGATCATCCCAGCCACAGC--------------ATCCCCTAAGATCATC- s canFam1.chr10 1272047 73 - 72717409 GGGGGTCACTCAGGGCG---AGGGCCGTGGGGAGGTCACTCAGGGCGAGGGCCGTGGGGGATCACTAAGGGCGAGG- s galGal2.chrUn 21909786 56 + 165033910 AGATGTCACT------------GCCATGGGAGGTGACATCAATGGAGACGTC--------ACCGTTGGAGATGACA- s fr1.chrUn 28251240 55 - 349519338 GGGCGCC-----GGGCGCTTTCTCCTTCAGGAATTCTGACGGATAC--------------ATCGACTTAGAGGA--- s danRer1.chr14 31938365 57 + 34612130 TAAAGTGAACCAGGTCT---CTGCTAATGTTAAAGTTGACCAGTTC--------------TCTGCTAATGTTAA--- a score=-369.0 s hg17.chr13_random 64339 2 + 186858 CA- s danRer1.chr14 31938422 2 + 34612130 -AG a score=-525.0 s hg17.chr13_random 64339 4 + 186858 CACC- s danRer1.chr14 31938422 4 + 34612130 -AGTG a score=-791.0 s hg17.chr13_random 64341 2 + 186858 CC- s panTro1.chr23 19019229 2 + 50034486 CT- s danRer1.chr14 31938424 2 + 34612130 -TG a score=2130.0 s hg17.chr13_random 64343 4 + 186858 GTTC s panTro1.chr23 19019231 4 + 50034486 GCCC s canFam1.chr10 1272121 2 - 72717409 --CC s galGal2.chrUn 21909842 2 + 165033910 --CC s fr1.chrUn 28251295 4 - 349519338 GCTC s danRer1.chr14 31938426 4 + 34612130 GTCC a score=-11652.0 s hg17.chr13_random 64347 25 + 186858 AGGGCAT---CGCTAACA--AAGATGGAGT s panTro1.chr23 19019235 14 + 50034486 ACGGTGT---CGCTAAC------------- s rn3.chr2 72913733 29 - 258222147 AGGGCATTTCTGCTGGCATGAAGAAGGGA- s canFam1.chr10 1272127 24 - 72717409 GGGGGGT---CACT--CAGGGAGAGGGCC- s galGal2.chrUn 21909848 21 + 165033910 GAGACGT---CACTGCCATGGGAG------ s fr1.chrUn 28251299 16 - 349519338 AAGGCCA---TGCT-----------GGAGT s danRer1.chr14 31938430 25 + 34612130 GGGGCTC---TGCTAATGTTAAAGTGAA-- a score=-7149.0 s hg17.chr13_random 64372 101 + 186858 CTACGG-------CATTGCTGAGGACGCTGCCCAGGGCATCGCTAATGAGGACGC------CGACCAGGGCATCGCTAATGAGGACACCACCCAGGGCATCGCCAACGAGGAAG s panTro1.chr23 19019249 88 + 50034486 --------------------GAGGACGCCGCCCATGGCGTCACTACCGAGGACGC------CGACGACGGCGTCGAAAAGGAGGACGCCGTCCACGGCGTCGCTAACGAGGATG s rn3.chr2 72913762 97 - 258222147 ----GG-------CATGGCTCAGGACACTGCTCAGGACACTTTGGAGGAAGACAA------GGCTCAGGGCACTTTGGGGGAAGACAAGGCTCAGGGCATGTGGGAGGAGGACA s canFam1.chr10 1272151 89 - 72717409 ------------------GTGGGGGGGTCACTCAGGGCGAGGGCCGTGGGGAGGT------CACTCAGGGCGAAGGCCGTGGGGG-GTCACTCAGGGCGAGGGCCGTGGGGGGG s galGal2.chrUn 21909869 78 + 165033910 ------------------GTGACAACGCTG---GGAATGTCACCATTGGAGATGT---------------CACCATTGGAGATGACACCATTGGAGATGTCACTGTTGGAGATG s fr1.chrUn 28251315 113 - 349519338 CCACAGGAGAGACCATCACCGAGGACGACATCGAGGAGTTGATGAAGGACGGGGACAAAAACAATGACGGAAAAATTGATTATGACGGTACGT-CGGCGTCTCCAACAAGGATT a score=-567.0 s hg17.chr13_random 64473 2 + 186858 CC s panTro1.chr23 19019337 2 + 50034486 CC s rn3.chr2 72913859 2 - 258222147 AG s canFam1.chr10 1272240 2 - 72717409 TC s galGal2.chrUn 21909947 2 + 165033910 TC s fr1.chrUn 28251428 2 - 349519338 CC s danRer1.chr14 31938802 2 + 34612130 TG a score=212.0 s hg17.chr13_random 64475 3 + 186858 -GCC s panTro1.chr23 19019491 3 + 50034486 -GCC s rn3.chr2 72913861 3 - 258222147 -ACT s canFam1.chr10 1272242 3 - 72717409 -ACT s galGal2.chrUn 21909949 3 + 165033910 -ACT s fr1.chrUn 28251447 3 - 349519338 -GCT s danRer1.chr14 31938804 3 + 34612130 AAC- a score=5478.0 s hg17.chr13_random 64478 5 + 186858 CAGGG s panTro1.chr23 19019494 5 + 50034486 CAGGG s rn3.chr2 72913864 5 - 258222147 CAGGG s canFam1.chr10 1272245 5 - 72717409 CAGGG s fr1.chrUn 28251454 5 - 349519338 CAGGT s danRer1.chr14 31938807 5 + 34612130 CAGGC a score=-30560.0 s hg17.chr13_random 64483 28 + 186858 CATCG--C---CGAGGACGCCATCCAGGG--------CATC- s panTro1.chr23 19019499 21 + 50034486 CATCG--CTAACGAGGACGCCAC------------------- s rn3.chr2 72913869 23 - 258222147 CACTG--T---GTAGGTGGGCACACAGG-------------- s canFam1.chr10 1272250 30 - 72717409 AGAGGGCC---GTGGGGGGTCACTCAGGG--------CGAG- s galGal2.chrUn 143123660 28 - 165033910 --------CATCGGTGTCATCTCCAACGG-----TGACATC- s fr1.chrUn 28251459 35 - 349519338 CACAG--C---CCAAATCAGCATAAATCA-GCCTGGATATT- s danRer1.chr14 31938812 31 + 34612130 -----------CTCAGCTAATGTTAAAGCTGACCAGTTCTCT a score=1029.0 s hg17.chr13_random 64511 21 + 186858 GCCAACGAGGAGGTTGCCCAG s rn3.chr2 72913892 17 - 258222147 ----AGGAGGACAAGGCTCAG s canFam1.chr10 1272280 21 - 72717409 GGCCGTGGGGGGGTCACTCAG s galGal2.chrUn 143123688 21 - 165033910 CCCAATGGTGACATCCCCAAT s danRer1.chr14 31938843 21 + 34612130 GCTAATGTTAAAGTGGTCCGG a score=-2109.0 s hg17.chr13_random 64532 28 + 186858 GG---CATCGCCAATGGGGTCGCCGCACAGG s panTro1.chr23 19019520 28 + 50034486 GG---CATCGCTAATGAGGTCGCTGCCCACG s rn3.chr2 72913909 25 - 258222147 GG---CACTGTGTA---GATGGGCACACAGG s canFam1.chr10 1272301 28 - 72717409 GG---AGAGGGCCATGGGGGGGTCACTCAGG s galGal2.chrUn 143123709 31 - 165033910 GGTGACATGTCCAACGTTGTCACCTCCCATG s fr1.chrUn 28251524 28 - 349519338 ag---catcagcattagcatcagcgttagca s danRer1.chr14 31938864 28 + 34612130 GG---CTCTGCTAATGTTAAAGTGGTCCGGG a score=-4482.0 s hg17.chr13_random 64560 9 + 186858 GC------ATCGCCA s canFam1.chr10 1272329 9 - 72717409 GCG-----AGGGCC- s galGal2.chrUn 143123740 15 - 165033910 GCGGTGACATCTCCA s fr1.chrUn 28251558 9 - 349519338 ------tcagcgtta s danRer1.chr14 31938892 9 + 34612130 ------GCTCTGCTA a score=1547.0 s hg17.chr13_random 64560 3 + 186858 GCA s panTro1.chr23 19019548 3 + 50034486 GCG s canFam1.chr10 1272329 3 - 72717409 GCG s galGal2.chrUn 143123740 3 - 165033910 GCG s fr1.chrUn 28251558 3 - 349519338 tca s danRer1.chr14 31938892 3 + 34612130 GCT a score=-525.0 s hg17.chr13_random 64563 6 + 186858 TCGCCA s panTro1.chr23 19019551 6 + 50034486 TCACTA s mm5.chr9 45430545 6 + 124177049 TCTCCA s canFam1.chr10 1272333 5 - 72717409 GGGCC- s galGal2.chrUn 143123749 6 - 165033910 TCTCCA s fr1.chrUn 28251561 6 - 349519338 gcgtta s danRer1.chr14 31938895 6 + 34612130 CTGCTA a score=-30482.0 s hg17.chr13_random 64569 84 + 186858 ATGAG-GACGCCACCC---------------AGGG---CA-TCGCCAACTGGGACGCCGTCCACGGCTTCGCCAACGGGGACG-------------CCGTCCTCAGCTTCGCC---------AACG s panTro1.chr23 19019557 84 + 50034486 ACGAG-GACGCCACCC---------------AGGG---CG-TCGCTAAGGAGGACGCCGCCCACGGCGTCGCTAAGGAGGATG-------------CCGCCCACAGCGTCGCT---------AAGG s mm5.chr9 45430551 99 + 124177049 GCAAG-GACACCTCCCCAGGCTTCCCCAGCAAGGA---CA-TCTCCAGCAAGGGCACCTCCTCAGGCCTCTCCAGCAAGGACA-------------CCTCCTCAGGCCTCTCC---------AACA s rn3.chr2 72913934 45 - 258222147 AGGAG-GACAAGGCTC---------------AGGG---CA--------------------------CGGTGTAGGTGGGCACA-------------CAG-----------------------GAGG s canFam1.chr10 1272338 84 - 72717409 GTGGG-GGGGTCACTC---------------AGGG---CG-AGGGCCGTGGGGGGGTCACTAAGGGCGAGGGCCGTGGGGGGG-------------TCACTCAGGGCGAGGGC---------CGTG s galGal2.chrUn 143123755 96 - 165033910 ATGGT-GACATCTCCA---------------ACGGTGACA-TCTCCAATGGTGTCATCCCCAATGGTGTCACCTCCAACGGTG-------------ACATCCCCAGCGTTGTCACCTCCCATGGCG s fr1.chrUn 28251569 99 - 349519338 atGAGCGTTGTCCTTA---------------AAAT---CAGTCTTCTGTGTGACAGAGTTCCTGGATTTCATGAAAGGTGTTGAATAAAAGCTCAACCGTCTCCTGGATCCTC---------GCCA s danRer1.chr14 31938901 84 + 34612130 ATGTT-AAAGTGAACC---------------AGGT---CT-CAGCTAATGTTAAAGCTGACCAGTTCTCTGCTAATGTTAAAG-------------TGGTCCGGGGCTCTGCT---------AATG a score=-29540.0 s hg17.chr13_random 64653 98 + 186858 GGGACGCCGCCCA---GGGCA---TCGCCAACGGGGACGCCA---CCAAGGG---CATGGGCAA---CGAGGTCA---CCATCCACGGCATCGCTAACGAGGACGCCGT---CCAGGGC s panTro1.chr23 19019641 71 + 50034486 AGGATGCAGCCCA------CACCGTCGCTAAGCAGGACGCCG---------------------------------------TCCACGGCGTCGCTAACGAGGTCGCCGC---CCAGGGC s mm5.chr9 45430650 107 + 124177049 AGGACACCTCCTC---AGGCC---TCTCCAGCAAGGGCACCTCCTCCTCAGG---CTTCCCCAG---CCCGGGCATCTCCAGCCCGGGCATCTCTAGCCAGGGCACCACCTTCCAGGTC s rn3.chr2 72913979 101 - 258222147 AGGACAAGGCTCA---GGGCA---CTGTGTAGGTGGGCACAC------AGGA---GGAGGACAAGGCTCAGGGCACTGTGTAGATGGGCACACAGGAGGAGGACAAGGC---TCAGGGC s canFam1.chr10 1272422 97 - 72717409 GGGAGGTCACTCA---AGGAG---AGGGCCGTGGGGAGGTCA---CTCAGGG---CGAGGGCCG---TGGGGGG----TCACTCAAGGCGAGGGCCGTGGGGAGGTCAC---TCACGGC s galGal2.chrUn 143123851 107 - 165033910 GTGACATCTCCAACAGTGACA---TCTCCAACGGTGACGTCT---CCAATGGTGTCATCTCCAA---CGGTGTCATCTCCAACGGTGACGTCTCCATGGATGTCACCTC---CCATGGC s fr1.chrUn 28251668 81 - 349519338 ACGCCAGCGGCTT-----------TCACCTGTGTGGACGTCC---CCACAGG---------------TGATGGTGTGGACGTCCCCATCACCTGTGTGGACGTCCACAC---C------ a score=-106.0 s hg17.chr13_random 64751 5 + 186858 ATCGC s panTro1.chr23 19019712 5 + 50034486 GTCGC s mm5.chr9 45430757 3 + 124177049 ATC-- s rn3.chr2 72914080 5 - 258222147 ACTGT s fr1.chrUn 28251749 5 - 349519338 ATCAC a score=351.0 s hg17.chr13_random 64751 5 + 186858 ATCGC s fr1.chrUn 28251749 5 - 349519338 ATCAC a score=0.0 s hg17.chr13_random 64756 3 + 186858 TAA a score=-137.0 s hg17.chr13_random 64756 1 + 186858 T s panTro1.chr23 19019717 1 + 50034486 T s rn3.chr2 72914085 1 - 258222147 G a score=0.0 s hg17.chr13_random 64756 1 + 186858 T a score=302.0 s hg17.chr13_random 64757 2 + 186858 AA s panTro1.chr23 19019718 2 + 50034486 AA s galGal2.chrUn 143123958 2 - 165033910 AG a score=-3243.0 s hg17.chr13_random 64759 56 + 186858 CGAGGTGGCCGCCCAGGGCATCGCCAACGAGGACGCCGCCCAGGGAA---TCGCCGAGG s panTro1.chr23 19019720 56 + 50034486 CGAGGTCGCCGTCCAGGGCGTCGCTAACGAGGACGCCGTCCAGGGCG---TCGCTAAAG s mm5.chr9 45430760 52 + 124177049 -------ATCGGGCAGATCATCATCTGCCAGGTCAGCCTCCACGACATCCTCCCCAACG s rn3.chr2 72914086 46 - 258222147 -TAGATGGGCACACAGG---------AGGAGGACAAGACTCAGGGCA---CTGTGTAGG s galGal2.chrUn 143123960 59 - 165033910 TGACATCTCCAACAGTGACATCTCCAATGGTGTCATCTCCAATGGTGACATCTCCAATG s fr1.chrUn 28251754 53 - 349519338 CTGTGTGGACGTCCA---CACCAGCAACTGTGTGGACGTTCACACCA---TACACCGTG a score=-31353.0 s hg17.chr13_random 64815 102 + 186858 ATGTCGC-----AC------AGGGCATCGCCAACGAGGACGCCGCCCA---GGGCATCGCCAACAAGGAGGCCGC------CCAGGGCATCGCCAACGAGGACGCCGCCCAGGGAATCGCTG s panTro1.chr23 19019776 97 + 50034486 AGGTCGCCGCCCAC--------GGCGTCGCTAACGAGGATGCCGCCCA---CGGCGTCGCTAACGAGGATGCCGT------CCAGGGCGTCGTTAACGAGGACGCCCTCCACGG-------- s mm5.chr9 45430812 115 + 124177049 AGAGTGT-----ACCTTGTTAGAGCAACACCAGTGGGGGCTGTCCCCATCCGGGCATCTCCTGCCAGGTCAGCACCAGCCACCAGGGC--CACCAGGGAGAGCCCAGGTAAGGGGGCCGCTG s rn3.chr2 72914132 81 - 258222147 TGGGCAC-----AC------AGG---------AGGAGGACAAGGCTCA---GGGCACGGTGT---AGGTGGGCAC------ACAGG---------AGGAGGACAAGGCTCAGGGCACGGTGT s galGal2.chrUn 143124019 78 - 165033910 GTGACAT-----TC---------------CCAGCGTTGTCACCTCCCA---TGGCAGTG------ACGTCTCCAT------CGGTGTCATCTCCAACGGTGACGTCTCCATTG--------- s fr1.chrUn 28251807 95 - 349519338 TGGGGAC-----GT-------TGCCATCACCTGCGGGGACGTCCACCC---CATCACCT------GCGTGGACGT------CCACACCATCACCTGCGGGGACGTCCACACCATCACCTGCG s danRer1.chr14 31938664 102 + 34612130 AAGTGGA-----CC------AGGTCTCAGCTAATGGTAAAGTGAACCA---GTGCTTTGCTAATGTTAAAGTGAA------CCAGGTCTCTGCTAATGTTAAAGTTGACCAGTTCTCTGCTA a score=-2413.0 s hg17.chr13_random 64917 8 + 186858 AGGACGTC------ s panTro1.chr23 19019873 4 + 50034486 ----CGTC------ s rn3.chr2 72914213 8 - 258222147 AGGTGGGC------ s galGal2.chrUn 143124097 8 - 165033910 ATGTCACC------ s fr1.chrUn 28251902 8 - 349519338 GGGACGTC------ s danRer1.chr14 31938766 11 + 34612130 ---ATGTTAAAGTG a score=-54737.0 s hg17.chr13_random 64925 124 + 186858 GCACAGGGCATCGCC---AACGAGGATGCCGC--CCAGGGCATCGCCAA--CGAGGAGGCCGCCCA---GGGCATCGCCAACAGGGTCGCCGC---CCAGGG---CATCGCCAATGACGCCAC---CCAGGGCATCGCCGAGG s panTro1.chr23 19019877 79 + 50034486 GCTCA---------------CGAGGATGCCAC--CCAGGCGATCGCTAAGCCG--GATGCCGCCCA---CGGCATCGCTAACGAGGTCACCGC---CCAGGG---CA------------------------------------ s mm5.chr9 45430674 111 + 124177049 GCA-AGGGCACCTCC--TCCTCAGGCTTCCCCAGCCCGGGCATCTCCAGCCCG-----------------GGCATCTCTAGCCAGGGCACCACCTTCCAGGT---CATCATCGGGCAGATCAT---------CATCTGCCAGG s rn3.chr2 72914221 97 - 258222147 ACACAGGA------------GGAGGACAAGGC--TCAGGGCACTGTGTAGGTG-----------------GGCACACAGGAGGAGGACAAGGC---TCAGCG---CACTGTGTAGGTGGGCAC---ACAGGA------GGAGG s galGal2.chrUn 143124105 118 - 165033910 TCCCATGGCAG---------TGACATCTCCAT--CGGTGACATCTCCAA--CGGTGACATCTCCAATGGTGACATCCCCAATAGTGACATCTC---CAATGGTGACATCTCCAACAGTGACAT---------CTCCATTGATG s fr1.chrUn 28251910 103 - 349519338 ------------ACCATCACCTGCGGGGACGT--CCACACCATCACCTG--TGGGGGCGTCCC---------CATCACCTGTGGGGACGTCAC------------CATCACCTGCGGGGACGT---CCACCCCATCACCTGTG s danRer1.chr14 31938777 127 + 34612130 GTCCGGGGCTCTGCTAATGTTAAAGTGAA-----CCAGGCCTCAGCTAA--TGTTAAAGCTGACCA---GTTCTCTGCTAATGTTAAAGTGGT---CCGGGG---CTCTGCTAATGTTAAAGTGGTCCGGGGCTCTGCTAATG a score=-572.0 s hg17.chr13_random 65049 7 + 186858 ACACCGC s mm5.chr9 45430785 7 + 124177049 TCAGCCT s rn3.chr2 72914318 7 - 258222147 ACAAGGC s galGal2.chrUn 143124223 7 - 165033910 TCACCTC s fr1.chrUn 28252013 7 - 349519338 TGGACGT a score=-9994.0 s hg17.chr13_random 65056 51 + 186858 CCAGGG------CTTCGCCAACGACGACG---CCGTCCAGGGCATCGCTAACGAGGACGC s panTro1.chr23 19019956 43 + 50034486 --------------TCGCTAACGAGGTCG---CCGTCCACGGCATCGCTATCGAGGACGC s mm5.chr9 45430792 55 + 124177049 CCACGACAT---CCTCCCCAACGAGAGTGTACCTTGTTAGAGCAACACCAGTGGGG--GC s rn3.chr2 72914325 39 - 258222147 TCAGGG----------------CACGGTG---TAGGTGGGAACACAG--GAGGAGGACAA s galGal2.chrUn 143124230 60 - 165033910 CCATGGCGGTGACATCTCCAATGGTGTCATCTCCAACAGTGACATCTCCAACGGTGACGT s fr1.chrUn 28252020 48 - 349519338 CCACAC------CATCACCTGCGGGGACG------TCCACACCATCACCTGTGGGGACGT s danRer1.chr14 31938455 51 + 34612130 CCAGGC------CTCAGCTAATGTTAAAG---CTGACCAGTTCTCTGCTAATGTTAAAGT a score=1432.0 s hg17.chr13_random 65107 5 + 186858 CGTCC s panTro1.chr23 19019999 5 + 50034486 CGTCC s mm5.chr9 45430847 5 + 124177049 TGTCC s rn3.chr2 72914364 5 - 258222147 GGCTC s galGal2.chrUn 143124290 5 - 165033910 CTCCA s danRer1.chr14 31938506 5 + 34612130 GGTCC a score=452.0 s hg17.chr13_random 65107 9 + 186858 CGTCCTGGG s danRer1.chr14 31938506 9 + 34612130 GGTCCGGGG a score=-409.0 s hg17.chr13_random 65112 4 + 186858 TGGG- s panTro1.chr23 19019181 4 + 50034486 AGGG- s mm5.chr9 45430857 4 + 124177049 CGGG- s rn3.chr2 72914369 4 - 258222147 AGGG- s galGal2.chrUn 143124298 4 - 165033910 ATGT- s danRer1.chr14 31938511 4 + 34612130 -GGGG a score=3313.0 s hg17.chr13_random 65116 7 + 186858 CATCGCC s panTro1.chr23 19019185 7 + 50034486 CGTCGCT s mm5.chr9 45430861 7 + 124177049 CATCTCC s rn3.chr2 72914373 7 - 258222147 CACTGTG s galGal2.chrUn 143124302 7 - 165033910 CACCTCC s fr1.chrUn 28252068 7 - 349519338 CACCATC s danRer1.chr14 31938515 7 + 34612130 CTCTGCT a score=-4390.0 s hg17.chr13_random 65123 54 + 186858 AACGACGACGCCGTCCAGGGCATCGCTAATGAAGATGGAGTCCACGGTATCGAT s panTro1.chr23 19019192 54 + 50034486 AACGAGGACGCCGTCCAGGGCGTTGCTAAAGAGGTTGCTGCCCACGGTGTCGCT s rn3.chr2 72914395 42 - 258222147 GAGGAGGACAAGGCTCAGGGCACGGTGTAGGTGG-----GCACACAG------- s galGal2.chrUn 143124315 54 - 165033910 AGTGACATCTCCAACAGTGACATCTCCAATGCTGACATCTCCAATGGTGACATT s fr1.chrUn 28252075 51 - 349519338 ACCTGCGGGGACGTCCACACCATCACCTGCGGGGAC---GTCCACCCCATCACC s danRer1.chr14 31938522 54 + 34612130 AATGTTAAAGTGGTCCGGGGCTCTGCTAATGTTAAAGTGAACCAGGTCTCAGCT a score=3067.0 s hg17.chr13_random 65177 14 + 186858 AACGAGGACACCGC s panTro1.chr23 19019246 14 + 50034486 AACGAGGACGCCGC s rn3.chr2 72914437 14 - 258222147 GAGGAGGACAAGGC s canFam1.chr7 3971097 14 + 83037113 AAGGGGGACCCCAG s galGal2.chrUn 143124372 14 - 165033910 AGCGTTGTCACCTC s fr1.chrUn 28252126 14 - 349519338 TGTGGGGACGTCAC s danRer1.chr14 31938576 14 + 34612130 AATGTTAAAGCTGA a score=3489.0 s hg17.chr13_random 65191 4 + 186858 CCAG s panTro1.chr23 19019260 4 + 50034486 CCAT s rn3.chr2 72914451 4 - 258222147 TCAG s canFam1.chr7 3971111 4 + 83037113 CCAG s galGal2.chrUn 143124386 4 - 165033910 CCAT s danRer1.chr14 31938590 4 + 34612130 CCAG a score=163.0 s hg17.chr13_random 65191 6 + 186858 CCAGGG s danRer1.chr14 31938590 6 + 34612130 CCAGTT a score=-1124.0 s hg17.chr13_random 65195 2 + 186858 --GG s panTro1.chr23 19017921 2 + 50034486 --GG s rn3.chr2 72914455 2 - 258222147 --GG s canFam1.chr7 3971115 2 + 83037113 --GA s galGal2.chrUn 143124390 2 - 165033910 --GG s danRer1.chr14 31938594 2 + 34612130 TT-- a score=1366.0 s hg17.chr13_random 65197 5 + 186858 CATCG s panTro1.chr23 19017923 5 + 50034486 CGTCG s rn3.chr2 72914457 5 - 258222147 CACTG s canFam1.chr7 3971117 5 + 83037113 CCTCC s galGal2.chrUn 143124392 5 - 165033910 CGGTG s fr1.chrUn 28252140 5 - 349519338 CATCA s danRer1.chr14 31938596 5 + 34612130 CTCTG a score=-21250.0 s hg17.chr13_random 65202 118 + 186858 CCAACTGGGACTCCGTCCAGGGCCTCGCCGACGGGGACGCCGTCCAGGGCCTCG---CT---GACTGGGTCGCCGTCCAGGGCCTCGCTGACGGGGACGCCGTCAAGGG---CATCGCTGATCGGGA s panTro1.chr23 19017928 64 + 50034486 CTAACGGGGACCCCATCCAGGGCGTCGCTAACGGGGACCCCGTCCAGGGCGTCG---CTAAGGA------------------------------------------------------------GGA s canFam1.chr7 3971122 102 + 83037113 TAGAGCAGAGCCCTGGCCAGAACCTCCTGAAGGGGAGACCCGACCAGGACCTC----CT---AAAGGGGGCCCCGACCA---------------GAACGTCCTAAAGGG---GAGCCCTGACTAGGA s galGal2.chrUn 143124397 109 - 165033910 ------ACATCTCCAATGGTGTCATCTCCAACGGTGACATCTCCAATGGTGACATGCCC---AGCGTTGTCACCTCCCA---------TGACGTTGACATCTCCAATGGTGTCATCTCCAACAGTGA s fr1.chrUn 28252145 103 - 349519338 CCTGCGGGGAC---GTCCACACCATCACCTGTGGGGACGTCCCCA------------TC---ACCTGCGGGGACGTCCACACCATCACCTGCGGGGACGTCCACAC------CATCACCTGCGGGGA s danRer1.chr14 31938601 118 + 34612130 CTAATGTTAAAGTGGTCCGGGGCTCTGCTAATGTTAAAGTGAACCAGGCCTCAG---CT---AATGTTAAAGTGGACCAGGTCTCAGCTAATGGTAAAGTGAACCAGTG---CTTTGCTAATGTTAA a score=-1053.0 s hg17.chr13_random 65320 2 + 186858 CG- s panTro1.chr23 19017992 2 + 50034486 CG- s canFam1.chr7 3971224 2 + 83037113 CA- s galGal2.chrUn 143124506 2 - 165033910 CA- s danRer1.chr14 31938719 2 + 34612130 -AG a score=-45.0 s hg17.chr13_random 65320 3 + 186858 CGC s danRer1.chr14 31938719 3 + 34612130 AGT a score=207.0 s hg17.chr13_random 65322 1 + 186858 C s panTro1.chr23 19017994 1 + 50034486 C s mm5.chr9 45430575 1 + 124177049 C s galGal2.chrUn 143124508 1 - 165033910 T a score=-3734.0 s hg17.chr13_random 65323 5 + 186858 -CGTCA s panTro1.chr23 19017995 5 + 50034486 -CGTCC s mm5.chr9 45430576 5 + 124177049 -CAGCA s canFam1.chr7 3971226 3 + 83037113 ---TCC s galGal2.chrUn 143124509 5 - 165033910 -CTCCA s fr1.chrUn 28252248 5 - 349519338 -CGTCC s danRer1.chr14 31938722 5 + 34612130 GAACC- a score=5367.0 s hg17.chr13_random 65328 14 + 186858 AGGGCATCGCTGAC s panTro1.chr23 19020004 14 + 50034486 AGGGCGTCGCTAAC s mm5.chr9 45430581 14 + 124177049 AGGACATCTCCAGC s canFam1.chr7 3971232 14 + 83037113 AGGGGAGCCCTGAC s galGal2.chrUn 143124520 14 - 165033910 TTGACATCTCCAAC s fr1.chrUn 28252253 14 - 349519338 ACCCCATCACCTGC s danRer1.chr14 31938727 14 + 34612130 AGGTCTCTGCTAAT a score=-11252.0 s hg17.chr13_random 65342 42 + 186858 GGGGACGCCGCCCAGGG---CATCCCTGA--------------CGGGGACGTCGTCCAC s panTro1.chr23 19020018 42 + 50034486 GAGGCCGCCGCCCAGGG---CATCGCTAC--------------CGAGGACGTCGCCAAC s mm5.chr9 45430595 42 + 124177049 AAGGGCACCTCCTCAGG---CCTCTCCAG--------------CAAGGACACCTCCTCA s rn3.chr1 159586829 56 + 268121971 GAGGAGACGACCCTGGG---CATCCTCTGAAAGGAGACGACCCTGAGGAGACGACCCTG s canFam1.chr7 3971246 42 + 83037113 TAGAACCCCCTAAAGGG---GAAACCTGA--------------CCAGAACATCCTAAAG s galGal2.chrUn 143124534 44 - 165033910 GGTGACATCTCCAATGGTGACATCTCCAA--------------CGGTGACGTCTCCAT- s fr1.chrUn 28252267 36 - 349519338 GGGGACGTCCACCC------CATCACCTG--------------TGGAGACATCCAC--- s danRer1.chr14 31938741 42 + 34612130 GTTAAAGTTGACCAGTT---CTCTGCTAA--------------TGTTAAAGTGGTCCGG a score=228.0 s hg17.chr13_random 65384 11 + 186858 GGCATCGCTGA s fr1.chrUn 28252303 11 - 349519338 ACCATCACCTG s danRer1.chr14 31938783 11 + 34612130 GGCTCTGCTAA a score=3793.0 s hg17.chr13_random 65384 11 + 186858 GGCATCGCTGA s panTro1.chr23 19020060 11 + 50034486 GGCATCGCTGA s mm5.chr9 45430637 11 + 124177049 GGCCTCTCCAA s rn3.chr1 159586885 11 + 268121971 GGCATCCTCTG s canFam1.chr7 3971288 11 + 83037113 GGGGGCCCCAA s fr1.chrUn 28252303 11 - 349519338 ACCATCACCTG s danRer1.chr14 31938783 11 + 34612130 GGCTCTGCTAA a score=236.0 s hg17.chr13_random 65395 3 + 186858 CGA s panTro1.chr23 19019329 3 + 50034486 CGA s mm5.chr9 45430648 3 + 124177049 CAA s rn3.chr1 159586896 2 + 268121971 -AA s canFam1.chr7 3971299 3 + 83037113 CTA s galGal2.chrUn 143124578 3 - 165033910 TGA s fr1.chrUn 28252314 3 - 349519338 TGT s danRer1.chr14 31938794 3 + 34612130 TGT a score=-19441.0 s hg17.chr13_random 65398 61 + 186858 GGACACCATCCAGGGCATCGCTGACGAGGACGCAGTCCAGCTCATCGCTGACGAGGACCCC s panTro1.chr23 19019457 61 + 50034486 GGACGCCACCCGCGGCATCACTAACGAGGTCGCTGCCCAGGGCATCGCTAACGAGGACGCC s mm5.chr9 45430651 50 + 124177049 GGACACCTCCTCAGGCCTCTCCAGCAAGGGCACCTCC----TCCTC-------AGGCTTCC s rn3.chr1 159586899 61 + 268121971 GGAGACGGCCCTGGGCATCCTCTGAAAGGAGACGACCCTGGGCCTCCTCTGAAAGGAGACG s canFam1.chr7 3971302 61 + 83037113 GAACTTCCTAAAGTGGAGCCCCGACCAGGACTTCCTAAAGGGGAGACCTGACTAGAACATC s galGal2.chrUn 143124581 25 - 165033910 TGTCACCTCCCATGGCA------------------------------------GTGACATC s fr1.chrUn 28252317 49 - 349519338 GGACATCCCC------ATCACCTGTGGGGGCGTCCCC------GTCACCTGCGGGGGCGTC s danRer1.chr14 31938797 61 + 34612130 TAAAGTGAACCAGGCCTCAGCTAATGTTAAAGCTGACCAGTTCTCTGCTAATGTTAAAGTG a score=1118.0 s hg17.chr13_random 65459 3 + 186858 GTC s mm5.chr9 45430703 3 + 124177049 AGC s rn3.chr1 159586960 3 + 268121971 GCC s canFam1.chr7 3971363 1 + 83037113 --C s galGal2.chrUn 143124609 3 - 165033910 ATC s danRer1.chr14 31938858 3 + 34612130 GTC a score=-717.0 s hg17.chr13_random 65459 10 + 186858 GTCCATGGCA s fr1.chrUn 28252369 1 - 349519338 G--------- s danRer1.chr14 31938858 10 + 34612130 GTCCGGGGCT a score=2938.0 s hg17.chr13_random 65462 7 + 186858 CATGGCA s panTro1.chr23 19020081 7 + 50034486 CATGGCA s mm5.chr9 45430706 7 + 124177049 CCGGGCA s rn3.chr1 159586963 7 + 268121971 CTGGGCA s canFam1.chr7 3971366 5 + 83037113 --AAGCG s galGal2.chrUn 143124612 7 - 165033910 GGTGACA s danRer1.chr14 31938861 7 + 34612130 CGGGGCT a score=-5196.0 s hg17.chr13_random 65469 47 + 186858 TCACTAACGAGGACGCCGCCCAGGGCATCACTAACTAGGACGCC-------------GCC s panTro1.chr23 19020088 47 + 50034486 TCACTAACGAGGAGGCCGCCCAGGCCATCGCTAAGCAGGACGCC-------------GCC s mm5.chr9 45430545 44 + 124177049 TCTCCAGCAAGGACACCTCCCCAGGCTTCCCCAGCAAGGACATC---------------- s rn3.chr1 159586970 47 + 268121971 TCTTCTGAAAGGAGACGACCCTGGGCCTCCTCTGAAAGGAGACG-------------GCC s canFam1.chr7 3971373 60 + 83037113 GCCCTGACCAGGACGTCCTAAAGAGGGGCCCTGACTAGGACTTCCTAGGGGAGACCCGAC s galGal2.chrUn 143124619 35 - 165033910 TCTCCAATGGTGACATCTCCAACGGCG---------ATGACATC---------------- s fr1.chrUn 28252370 41 - 349519338 TCACCTGTGGGGGCGTCCCC------GTCACCTGTGGGGGCGTC-------------CCC s danRer1.chr14 31938868 47 + 34612130 CTGCTAATGTTAAAGTGGTCCGGGGCTCTGCTAATGTTAAAGTG-------------AAC a score=-17300.0 s hg17.chr13_random 65516 31 + 186858 CAGGGCATCGCTAAC------T----AGGACGCTGCCCAGG s panTro1.chr23 19020135 31 + 50034486 CACGGCATCACTAACGATCAGT----------CCGCCCAGG s mm5.chr9 45430589 1 + 124177049 ---------------------T------------------- s rn3.chr1 159587017 31 + 268121971 CTGGGCCTCCTC---------TGAA-AGGAGACGACCCTGG s canFam1.chr7 3971433 30 + 83037113 CAGAACATCC-----------TAAAGGGGGGCCTGACCAGG s galGal2.chrUn 143124654 20 - 165033910 ---------------------TCCAACGGTGACATCTCCAA s danRer1.chr14 31938915 31 + 34612130 -CAGGTCTCAGC---------TAATGTTAAAGCTGACCAGT a score=-1481.0 s hg17.chr13_random 65547 39 + 186858 GCATCGCTAACGAGGACGCC-GCCCAGGG------CATCGCTAACG s panTro1.chr23 19020166 39 + 50034486 GCGTCGCTAACGAGGTCGCC-GCCAAGGG------CGTCGCTAACG s mm5.chr9 45430590 33 + 124177049 ------CCAGCAAGGGCACC-TCCTCAGG------CCTCTCCAGCA s rn3.chr1 159587048 39 + 268121971 GCATCTTCTGAAAGGAGACG-ACCCTGGG------CCTCCTCTGAA s canFam1.chr7 3971250 39 + 83037113 -ACCCCCTAAAGGGGAAACCTGACCAGAA------CATCCTAAAGG s galGal2.chrUn 143124679 45 - 165033910 ACATGTCCAACGTTGTCACC-TCCCATGGTGGTGACATCTCCAACG s fr1.chrUn 340160068 39 + 349519338 TCAGTGGTGATGAGGAGCTG-ATCCACGT------CAGTGGTGATG s danRer1.chr14 31938946 39 + 34612130 TCTCTGCTAATGTTAAAGTG-GTCCGGGG------CTCTGCTAATG a score=498.0 s hg17.chr13_random 65586 74 + 186858 AGGACACCGTCCATGG---TATCCCTAAAGAGGTCACCGTCCAGGGCGTCACTAACGAGGA---CGCCGTCCAGGGCGTC s panTro1.chr23 19020205 74 + 50034486 AGGATGCCGTCCACGG---CGTCGCTAACGAGGTCGCCGTCCACGGCGTCGCTAACGAGGA---CCCCGTCCAGGGCGTC s mm5.chr9 45430623 77 + 124177049 AGGACACCTCCTCAGG---CCTCTCCAACAAGGACACCTCCTCAGGCCTCTCCAGCAAGGGCACCTCCTCCTCAGGCTTC s rn3.chr1 159587087 74 + 268121971 AGGAGACGACCCTGGG---CATCTTCTGAAAGGAGACGATCCTGGGCATCTTCTGAAAGGA---GACGACCCTGGGCATC s canFam1.chr7 3971289 74 + 83037113 GGGGCCCCAACTAGAA---CTTCCTAAAGTGGAGCCCCGACCAGGACTTCCTAAAGGGGAG---ACCTGACTAGAACATC s galGal2.chrUn 143124724 77 - 165033910 GTGACATCTCCAACGGTGTCATCTCCAACGGTGTCATCCCCAATGGTGTCACCTCCAACGG---TGACATCCCCAGCGTT s fr1.chrUn 340160107 74 + 349519338 AGGAGCTGATCCACGT---CGGTCGTGATGAGGAGCTGATCCACGTCAGTCGTGATGAGGA---GCTGATCCACGTCAGT s danRer1.chr14 31938499 74 + 34612130 TTAAAGTGGTCCGGGG---CTCTGCTAATGTTAAAGTGGTCCGGGGCTCTGCTAATGTTAA---AGTGAACCAGGTCTCA a score=-12332.0 s hg17.chr13_random 65660 91 + 186858 GCTAACGATGA-CG---CCGTCCAGGGCGTCGCTAACGAGGACGCCGTCCACGGCGTCGCTAACTGGGACGCCGCCC-ACGGCGTCGCTAACGAGG s panTro1.chr23 19020279 92 + 50034486 GCTAACGAGGA-CG---CCGCCCACGGCGTCGCTAACGAGGTCGCCGTCCAGGGCGTCGCTAACGAGGACGCCGTCCGAGGGCGTCGCTAACGAGG s mm5.chr9 45430700 85 + 124177049 CCCAGCCCGGG-CATCTCCAGCCCGGGCATCTCTAGCCAGGGCACCACCTTCCAGGTCATCATCGGG---------C-AGATCATCATCTGCCAGG s canFam1.chr7 3971363 88 + 83037113 -CTAAAGCGAAGCC---CTGACCAGGACGTCCTAAAGAGGGGCCCTGACTAGGACTTC-CTAGGGGAGAC-CCGACC-AGAACATC-CTAAAGGGG s galGal2.chrUn 143124804 79 - 165033910 ACCTCCCATGA-CG---CT------GACATCTCCACTGATGTCACCTCCCATGACGCTGACATCT------CCACTG-ATGTCCCCCCCAGCGGTG s fr1.chrUn 340160181 91 + 349519338 GGTGATGAGGA-GC---TGATCCACGTCGGTGGTGATGAGGAGCTGATCCACGTCAGTCGTGATGAGGAGCTGATCC-ACGTCGGTCGTGATGAGG s danRer1.chr14 31938573 91 + 34612130 GCTAATGTTAA-AG---CTGACCAGTTCTCTGCTAATGTTAAAGTGGTCCGGGGCTCTGCTAATGTTAAAGTGAACC-AGGCCTCAGCTAATGTTA a score=-1067.0 s hg17.chr13_random 65751 10 + 186858 ACGCCGCCCA s panTro1.chr23 19020371 10 + 50034486 ACGCCGTACA s mm5.chr9 45430785 10 + 124177049 TCAGCCTCCA s canFam1.chr7 3971451 10 + 83037113 GGCCTGACCA s galGal2.chrUn 143124883 10 - 165033910 ACATCTCCAG s danRer1.chr14 31938664 10 + 34612130 AAGTGGACCA a score=-370.0 s hg17.chr13_random 65761 5 + 186858 CGGCA- s panTro1.chr23 19020381 5 + 50034486 CAGCA- s mm5.chr9 45430795 5 + 124177049 CGACA- s galGal2.chrUn 143124893 5 - 165033910 CAGCG- s danRer1.chr14 31938674 5 + 34612130 -GGTCT a score=2880.0 s hg17.chr13_random 65766 11 + 186858 TCGCTAACGAG s panTro1.chr23 19020386 11 + 50034486 TCGCTAACGAG s mm5.chr9 45430803 11 + 124177049 TCCCCAACGAG s danRer1.chr14 31938679 11 + 34612130 CAGCTAATGGT a score=-31.0 s hg17.chr13_random 65777 1 + 186858 G s danRer1.chr14 31938690 1 + 34612130 A a score=100.0 s hg17.chr13_random 65777 1 + 186858 G s panTro1.chr23 19020397 1 + 50034486 G a score=4148.0 s hg17.chr13_random 65778 79 + 186858 TCGCCGCCCACGGCTTCGCTAACGAGGACGCCCTCCACGGCAT-----------------------CGCTAACGAGGATGCCGTCCACGGCATCGCTAACGA s panTro1.chr23 19020398 102 + 50034486 ACTCCGTATACGACATCGCTAATGAGGATGCCGTATATGACATCGCTAATGACACCGTACAAGGCACGCTAACGAGGACGCTGTACAGGACATCGCTAATGA s fr1.chrUn 168270545 79 - 349519338 TCGTCACCTACGACTTCAGCAACCACATCGCCATCTACGACTT-----------------------CAGCAACCACATCGTCACCTACGACACCAATGATGA s danRer1.chr14 31938691 79 + 34612130 AAGTGAACCAGTGCTTTGCTAATGTTAAAGTGAACCAGGTCTC-----------------------TGCTAATGTTAAAGTTGACCAGTTCTCTGCTAATGT a score=993.0 s hg17.chr13_random 65857 6 + 186858 GAAAAT s panTro1.chr23 19040048 6 + 50034486 GAAAAT s danRer1.chr14 31938770 6 + 34612130 TAAAGT a score=28608.0 s hg17.chr13_random 65863 344 + 186858 CAAATGTTAACCAGCAGTGCCCTGCTTCAACACCATCATCGGAAGTCATAAGTTGAACTCTTTTTtgatgtttaaagcctgcataatattcgctgtgttattattcagcctattactatttccttcatgatggaaatttggtttatcccaattttctattctatcaaaacaccgctacataaaaaatccccatgcacatatttctcctaattgtggaaatattttacctaaaagactctagacatgggatgaaattcccaggttactggaattttaaaatagataggtacttccaaattgacctcttacaaattatatgaatttgtaagcttccaactgttatg s panTro1.chr23 19040054 344 + 50034486 CAAATGTAAACCAGCAGTGACCTACTTCAATGTGATCATCGGAAGTCAGAAGTTGAGCTCATTTTTGATGTTTAAAGCCTGCATAATATTCACTGTGTTATTATTCAGTGTATTACTATTTCCTTCATGATGGAAATTTGGTTTGCCCCAACTTTCTATTCTATCAAAACACTGCTACATAGAAAATCCCCATGCACATATTTCTCCTAATTGTGGAAATATTTTACATAAAAGACTCTAGACATGGGATGAAATTCCCAGGTTATTGGAATTTTAAAATAGATAGGTACTCCCAAATTGCCCTCTTACAAATTATATGAATTCATAAGCTTCCAACTGTTATG a score=300.0 s hg17.chr13_random 66207 1 + 186858 g s panTro1.chr23 19040398 1 + 50034486 G s rn3.chr20 42296321 1 - 55296979 G a score=38054.0 s hg17.chr13_random 66208 199 + 186858 agttacccctttTGAGAAATCTGTGCTAAAAGGACCCAAACAATGCTGATGACAATGATCAGGATAATAAGTACGCTGGGAAGAGAACAAAATGATTTAGATCTTAGACAAGT--CATTCTAG-GTGTCTCCACTGT--TTCAGTTCTCGCGTTCGTTCATTCTTGTG----CTTTTTCGTT---TTACCAAATAAAA--TAGCCCCTTGATG s panTro1.chr23 19040399 199 + 50034486 AGTTACCCATTTTGAGAAATCTGTGCTAAAAGGACCCAAACAATGCTGATGACAATGATCAGGATAATAAGTACGCTGGGAAGACAACAAAATGATTTAAATCTTAGACAAGT--CATTCTAG-GTGTCTCCACTGT--TTCAGTTCTTG----TGTTCATTCTTGTGGTATCTTTTCCCTT---TTACCAAATAGAA--AAGCTCCCTGACA s rn3.chr20 42296322 187 - 55296979 AGCTGTCCGTTCTGTGACGCCTGTATCAGCGGGACCCACAGGATGCTGATGACGATTAGGACGATGCCAAATACCCTGCCAGGGAAACACCACGGTTTAAAGATTAGACTAAA--GCCTCTGGCCCAGCCCCACCAT--TCCCAACATCG----------------------CTCTTCCATTGGATTTCCAAGGAAAGTCAGGCTGTTCGACC s canFam1.chr26 28119768 201 + 41009621 AGTTGTCCATTTTGAGATACCTGCACTAATGGGACCCACAAAATACTGATGACAATTAATAGAATGATAAATAGCCTGAGGAGAAAACAAAATGATTTAAATATTAAACAAAAAGCATTATCA-ATACTTCTATTGTTCTTTAGTTCTTA----AATTCATTCTTGTG----GCCATTCATTGATTTTCCAAATAAAATCAAACTC---AACC a score=12341.0 s hg17.chr13_random 66407 44 + 186858 TCATATGAATCCACGCTATGCTTAATGAGTATTGGTTAGTAAAA s panTro1.chr23 19041049 33 + 50034486 TCACATGAATCCA-----------ATGAGTATTGGTTAGTAAAA s rn3.chr20 42296509 44 - 55296979 TTGCACGGACCCATGCCATGCCTAAAGAATATCAGGTAGTAAAA s canFam1.chr26 28119969 44 + 41009621 TCACATGAAGCCATGCCATGCTTAATGATCACTGGTTAGTAAAA a score=22929.0 s hg17.chr13_random 66451 201 + 186858 -------------------TGCCTATAACTAGTA-----ATCTTCATCTATGCAATTAAATATTAATTCATAAAAC--ACTTCAAATGT-AAACAAT----AATTAGTAAATGAAAAGTACA-------TAATACCTCGATTAGAAAAAAATCA---------CTCCATTAAAA-GACATT---------------ATTTGTGTGAT-----AAAAGAGTTTGCCATTTTTGTATTTTTCTACAAGGTTAAAGAAAACTGAGTCAACTT s panTro1.chr23 19041082 200 + 50034486 -------------------TGCCTATGACTAGTC-----ATCTTCATCTATGCAATTAAATATTAAATCATCAAAC--ACTTCAAATGT-AAGCAATTAATAATTAGTGAATGAAAAGTACA-------TAATACATCAATTAGAAAAAAA------------CTCTATTAAAAAGACATT------------------TGTGTGAT-----AAAAGAGATTGCCATTTTTGTATTTTTCTACAAAGTTAAAGAAAACTAAGTCAGCTT s rn3.chr20 42296777 204 - 55296979 -------------------TAGCTGTAACT----------TTTTAATTTATGAGATTAGCTATATATTCACGAAATCGATTCCAATTGT-AGCAACT----GACTAGTACTTCTCAAGGTAC-------TCATAC----GTTAGAGACAAA---------------CATCAAAC-TACTTCTATCCACCGCTAATAATTTATGTGATAGATAAAGAAGATTTGCCTTTTT----CCTTTTTCCCAGTTGGAGGGAAACTGAGTCAATCT s canFam1.chr26 28120013 243 + 41009621 TGCCAATAAAGCAATTGCTTGTCTACAATTAGTAAAAATAGCTTCAATTATGAGATTAAACATCCATTCAT--AAC--AGTTCAAATGTCAGTCACT----GGTTAATAATTCTCTAATGCAATTTATGTAATATATCAGTTAGAAAAAAACCACCATACTATTTCTATGAGTAAGTAATT---------------ATTTGTTTGATAAT--GAAAGTCACTCCCATTTTGAT-CTTTTTTCCTAGCTTGAGAAAAACTAAGTCAGCGT a score=2653.0 s hg17.chr13_random 66652 23 + 186858 ATACAAGTGAATTTTAAAAGACT s panTro1.chr23 19041282 23 + 50034486 GTACAAGTGAATTTTAAAAGCCT s canFam1.chr26 28120256 23 + 41009621 GCACAGGTTAGAATTACAATATT a score=20037.0 s hg17.chr13_random 66675 305 + 186858 TTAGGGTgggcgtggtggctgacacctgtaatcccaacactttgggaggccgaggagggcagatcacctgaggtcaggagttcgaaaccagcctgaccaacatggtgaaatctcatttctactaaaaatacaaaaaaaattagcccagtgtggtggcacgtgcctataatctcagctacttgggaggctgagacaggagaatagtttgaacctcggaggcggaggttgcagtgaaccaggattgcaccattgcactccagcttgggcaacaagagcgaaactccatctca--aaaataaataaaaaa s panTro1.chr23 19041305 302 + 50034486 TTAggccaggcatggtggttcacgcctgtaatcccagcactttgggaggccaaggtaggcagatcacctgaggtcaggagttcgagaccagcttggccaacatagtgaaa-cccatctctaccaaaaatac---aaaaattagccaggtgtggtggcaggtgcctgcagttccagctaccagggaggctgaggcaggagaattgcttgaacccgggagacggaggttgcagtgagccgagatggtaccactgcactccagcctgggcaac-agaatgagactccatctcaggaaaaaaaaaaaaaaa a score=958.0 s hg17.chr13_random 66980 23 + 186858 taaataagtaaataaa---taaaAGC s panTro1.chr23 17150144 26 + 50034486 TAACTTAATAAACAAATAGTAAAAGC a score=4691.0 s hg17.chr13_random 67003 27 + 186858 CTTTAACCCAGAATGCTGAGTAAATTG s panTro1.chr23 17150170 27 + 50034486 CTTTTACCCCAGATGCTGAGTAAATTG s canFam1.chr26 28120279 27 + 41009621 CTTTATTCCAGAATGTGGAGTGAATTG a score=30284.0 s hg17.chr13_random 67030 389 + 186858 TCCAAAAATGCTAACCTA-TGCATTTCAATACTATAGGAGTCGTGTAGGTAGAAATAACTAGATGAAATACT-------------------TCTG----------------------------------GTATTTCACCTTCCCAACTCA-CACGAGCCAGTGTTTTT-CTGTGAATAACAAAAACAGCAGAATTTACTTGCCTATCCATAAGAGGTTACCACTTCTGTGTGTTCCCCTGAAACAAGTGGTGGCTGGGTGAGAAGGTGGAC-AGCACTAGGGTAGGAGATGGGGGCTCCAGTATCGTGGGTGAGCTTCCTAAAC-CTCTGCAACTTT-CAGCCCCtaaatgggatgagccatcagaatttttagcacaatgcccagaacaaagtaaggatt-------tgacaaatgatgcct-ctCTCCACATT---GTTCT----------GTCATCAGCCACCGCA s panTro1.chr17 71292105 436 - 73346066 GCCAAAAATGCTAGCCTAACGCATTTCAATACTACAGGATTCATGTAGGTAGAACTAACCGAATAAAATACTGGTAGTCTGTATAATCCTATCTGTGGTTCCTGGGGTCCAGGGAGAAT--------GAGTTTGTCACCTTCCCACCTCC-CATGAGCCAGTGTTTTTTCCGTGAATAATAAAAACAGCAGGATTTACTTGCCTGTCCAGAAAAGGTCATCACTTCTGTGTGTTCTCCTGAAACAGGTGGTGGCTGGGTGAAAAGGCGGAC-AGCATTAGGGCTGGAGATGGGGGCTCCAGAATCTTGGATGAGCTTCTGAAAC-CTCTGCAACTTC-CAGCCACTAAATGGAATGAGCCACGGAAAGCTTTAGCCCAATGCCCAGAACAAGATCAGGGTTTAGTGCATGGCA--------CTGCTCTCC---TTGTAGTTCT----------GTCATCAGCCGCCACA s canFam1.chr26 28120306 417 + 41009621 GCCAGAAATGGTAATTTG-TGTATTTTACTCCTTGAGTACTTTGACAGGTAGAAAGAATTGGTTAAAATATT-------GGTAAAACCCTTTTAGAAGTTCCTGG--------------GGTCCAGGGAGAATGACTAATGCTAAACTCCACAATATTCTGTGTTTAT----TGTATAAATAAACAAACATAATTTACTGGACT-----------GTCATTACTTCTCTGTGCTCACCTGAAACAGAGAGGGG--GGGAAAAGTGGGGAACAAGTATTTAGGCAGGAGATTGAGGAACAGGTATCTCATTGAAGCTTCAAAAACTTTCTGCAACCTTGCAATAATTAAATGTGATAAACCATGGAAAGTTTGAGCATGATTCTTAG---ATAATAAAGTTTAAT----AAATAAATAATACCCATTTTCC---TT---GTTTTCCTTGTTATCATCATTGGAAAAcaaa a score=3641.0 s hg17.chr13_random 67419 256 + 186858 TCCTGTACCTCCA-AGCCCACTGGGCTCCGGCTG-TTTCCATCACATGGAGAATGA------------------------------CTCAGAGCCTGGCATCCAGCCACCCTCCTGGCCTTTCTGCTTCTCACTCTGCCACTGGCTCCTCATGGACCAGCCT-----GGGTGTCCTCAGATATACCGCAAACTTCACTGTGGGAGTCACGTAGCCCTCACTGCTCCTTCACCAGGGAGCCACGGGGCTTTCCTCCTCA-------------------------------------GGAGGACTCTGCAAGCAGCTGGA-TGAAGGGCCCTC s canFam1.chr26 28120723 331 + 41009621 tcatgtacttcccttactctcttatcttcagttgttttctgtcatatgtggaataaaatccagtcttgttatggcttaagtggccctacataatttcacctctagctaccctttagcctatggttgttatcacttttccacttgctcatcatgtgccaacctcacaccactgtcctgagacacaccacatacatgagtgttgtaagaattcagcatttactgttcctttcctacagagacatagggttcacttccacacttccctcaagactgtcctcaaatgggacctcctcagggagtactccctgaacacctgtctTGAGGAGCCCCC a score=-215.0 s hg17.chr13_random 67675 182 + 186858 CCATCTCTCATCCTTCCTTAACTTTTGTCACAGTTCTCCTTCCTTCCACTCAGTGCTGCACACACTGATTGATCCTCCATCTT-----------------CCCCAAAAGACAGGAA-----------------------------------CAGCATGAGCAGTAGAGAGTAGATTCCAATGATAGA---------------------------------AAAAATAGTGATTTCTCATTT--CCATTGATCATCAATGAAGAAAATGT s canFam1.chr26 28121399 257 + 41009621 ccacctttaatcctgctttaactttcttcctag---cactttttgccatcagatatggaatacatttattgatttTCTATCTTTATAACAAAGGCATACATTCTACAAAGCAGGAAATTATTTTTCACATATATGTTCTTTTTCATATTTGTATTCTGGGAACTAGTAGGCA---TTTAATgagagagagagagagagagagagagagagagagagagagagagagagaAATTCATTACTTTATTATTGA-----GATAAAG-GCATTT a score=34065.0 s hg17.chr13_random 67857 255 + 186858 ATCCTGAAGGTCATGTACCTCCTATGGGACTGCTGCATCCTCAGCCTCCTGAATTTCAGCCCAGCACCTTCCTCCCCAG---CACAGCAACAGGTCAGCCCTTACCAGCATCCCTCTCTTATTGCCTTTGTGCACAGCCAGCACCAGGGCCGGGGGAGGCCTTGGGATTGTCCCTCCCCA---ACAATCTGTGAAACAATCCTTTATGTCACCAACAAAGCACAGCCTTATGCATTGGTGGTCAGTCCCTCCCAACACCTC s panTro1.chr23 22147123 255 + 50034486 ATCCTGAAGGTCACGTACCTCCTATGGGACTGCTGCATCCTCAGCCTCCTGAATTTCAGCCCAGCACCTTCCTCCCCAG---CACAGCAACAGGTCAGCCCTTACCAGCATCCCTCTCTTATTGCCTTTGTGCAGAGCCAGCACCAGGGCCAGGGGAGGCCTTGAGATTGTCCCTCCCCA---AAAATTTGAGAAATAATCCTTCACGTCACCAACAAAGCACAGCCTTATGCATTGGTGGTCAGTCCCTCCCAACACCTC s canFam1.chr26 28121656 252 + 41009621 ATACCCAAGATCATATACCTATTGGCGGACTTCTGCATCTTGGGCTTACTGAACTCAGGTCCAACACTTTCGCTACCAGAAACATAG---------ATGCTTTATTGTTCTTATTCTCCTATAGCATTTTTCCAGAGTCAAGATCTAGACCAAGTGAGCTGCTGGAATTTTCCTTGGAAATGTTTAATTTACTAAGCTATTGCTACTGTCTCCTGCAAAATGCTACTTTTTGCATGGGTGGTCAGTTTCTCTTGGCATCTC a score=61954.0 s hg17.chr13_random 68112 776 + 186858 TGTCACTGTAAAGCTGGCAG-GCAACCCTCCAAGGTTGGCCTTCCCAAGCACTGCACCTCTAGGTGACAGAGCACGTCCTTACCTTGAGGCCTGGGCACCCAGTCTATCCTGTCCAGTGAGCGAGCTGTGGAGAAGGGGGGATTTCGGGTTAAGGGGAGACTAGCAGGGCTCCTGCTTTTATGTTGCCCTGTTGGGAATGCTATTAAAGAAACACAAAGTGCTAAGCAGTGAGGATAGAACATGTTTTCATTATTTAAACCAATACATTCCACAGATGGAATAATAAGAAATGCTACAACCAagctaaccgaatccaacagcataacaaaaagataatccaccatgattcaagtgggtttcatactagggatgcagggatggtttaacataggcaagtcaatacatgtgatacatcacataaataaaactaaaaacaaaaa-tcacatgataatctgaatagatgcagaaaaagcctttgacaaaatccagcatttctttatgattaaaaccgttcatcaaaattggcatagaatggacataccttaaggtaataaaagctatctatgacaaacccacaaccaacattttcctgaatgggggagagttgaaagcattccccctgaggacgggaacaagacaaagatgcccacgttcaccactt---cttaacacagtgctgttcactacagcattggttataagagcaagactggaaacagaatgaatggatacccatagcggggtgcttaagtaattttgggaatagtcatagggtgcag s panTro1.chr23 22147378 777 + 50034486 TGTCACTGTAAAGCTGGCAGCGC--CCCTCCAAGGTTGGCCTTCCCAAGCACTGCACCTCTAGGTGACAGAGTGTGTCCTTACCTTGAGGCCTGGGCGCCCAGTCTATCCTGTCCAGTGAGCGAGCTGTGGAGAAGGGGGGATTCCAGGTTAAGGGGAGACTAGCAAGGCTCCTGCTTTTATGCTGCCCTATTGGGAAGGCTGTTAAAGAAACACAAGTTGTGAAGCAGTGAAGATAGAACATGTTTTCATTACTTAAACCAATACATTCCACAGATGGAATAATAAGAAATGCTACATCCAagctaactgaatccaacagcatatcaaaaagataatccaccatga-tcaagtgggtttcataccagggatacagggatggtttaacacatgcaagtcaataaatgtgatacatcacataaataaaattaaaaacaaaaactcatatgataatctgaatagattcagaaaaaacatttgagaaaatacagcatttctttatgattaaaatccttcagcaaaatcagcatagaagggacataccttaaggtaataaaagccatctgtgacaaacccacagccaacattatcctgaatgggggaaagtggaaagcattccccctgaggactggaacaagacaaagatgcccacattcaccacttctactcaacatagtgctattcactacagcattggttgtaaaagcaagactggaaacagaacaaatggatacccataat-gagtgcttaagtaattttgggaatagtcatagggtgcag a score=19413.0 s hg17.chr13_random 68888 295 + 186858 tactttatagctctgaaacaatacaatggatttacatttgaaatgtggaatgataactaaggtgcattgcccagtgatatatgcagaggtgcagaggactttgtgtaAACACGATCACACATCAGCATGCATTCCAGGTGCATGTTTCTATTTGCACATAGATT-GCAGGGATGATAGGCAAACAAAAATGTTGACTTGGTGTTTGGAAGTTCAGAGTGGAAGGGAAACTTCCTTGCTAACCTTTTATGATATTTAGAGT---TTCTAAATGTGAATACGTAATACATTTAGAAATCTT s panTro1.chr17 2049503 299 + 73346066 TACTTTATAGCTCTTAAATAATGAAATGGATTTACATTTGAAATGCAGAATGGTAGCTAAGATGCATTGACCAGTGATATATGCACAGCTACAGAAGACTTTGTATAAATATAATCATGCAGAAGCATGCGTTCCTGGTGCTTGTTTGTATTTGCAGATACAGTAGCAGGGATGATGTGCAAACAAAAATGCTGACTTGGTGTTTGGGAGTTCAGAGTGGAAGGGAAACTTCCTTTCAAACCCTTTCAGATATTTAGAATAATTTCTAACCATAAATATGTAATACATTTAGAAATCTA a score=3460.0 s hg17.chr13_random 69183 83 + 186858 AGTTAATAAGAAAAGCCT-------CTGTTCCTGGCCTCTTGCTGGCACATGTCAGGTGGAAATGGGGCTGTAATGCTAA----TGTGTGCAAA s panTro1.chr17 2049802 89 + 73346066 GGTTAATAAGAAAAGCTTACAGTTCCTGTTCTT---CTCCTG--GGCACATGTCTGGTGGACATGGGGCTGTCATAGTAAGTGATGTGTGCAAA s canFam1.chr26 12889286 82 - 41009621 AGTAAAATACACAAATTA-------CCATTTCTGGCCAATTCACTCCACAT-TCTGGAATAAAGAATATTGTAATTCTAA----CCTGTGCACG a score=16410.0 s hg17.chr13_random 69266 204 + 186858 --------------------CTGAGAAAAAT-CCAAGAATGGGAGTCTGCTTTTTTCATCATACAAATAATT----GTGAATAGAAACAGTATGATA----ATTGCTCATTGATATACCATGCATATTCTATTAGA----TAATAATAAATTTCTGAAATTTGAACTATACTTACACATG---------------------GAAATTGAAATATATGGATGAA-----ACATTGTGGCTTATA-TAGGCAA----TTGTTTTATTGGC s panTro1.chr17 2049891 222 + 73346066 --------------------CTGAGAAAAAT-CCAAGAATGGGAGTCTGATTTTTTCATCA----AATAATT----CTTAAGAGAAGTAGTGTGGTGG-TTATTGCTCATTGATATATTACAAATATG-TACTAGA----TAATAAT----TTCTGACATTTGAACTGTATTTACACATGTTGAATTGAAATACCTAGATAAAAATTGAAATACATAGATAAA-----ATATTGTGACTAATA-TAGGCAAACAATTTTTTT-TTGGC s mm5.chr10 54698497 212 - 130633972 --------------------CTGGGAAAAAG--GAAAAAGAAGAATCTGCCTTATTTATCATATACATTATTAGCGATGGATAGACGTGGTTTCAGGT-TTGTTTCTAATTCATGT-------GTACCTTGAAAAG----TACTAGTCGGTTGCTACAATTTGAGTTGATTTCATGAATA---------------------CACAGCAAATCTCATGAATAAAAAAAGAAATTACAACTAATT-TTTTAAAGAAGTTCATTTGTTGAC s canFam1.chr26 12889368 239 - 41009621 CTGACTTAGTTTTTCTCAAGCTAGGAAAAAAGATCAAAATGGGAGT-GACTTTCATTATCAAACAAATAATTACTTACTCATAGAAATAGTATGGTGGTTTTTTTCTAACTGATATATTACATAAATTGCATTAGAGAATTATTAACCAGTGACTGACATTTGAACTG---TTATGAATG---------------------GATGTTTAATCTCATAATTGAA----GCTATTTTTACTAATTGTAGACAAGCAATTGCTTTATTGGC a score=4786.0 s hg17.chr13_random 69470 25 + 186858 GTTTTACAAACTGATCATCATTTCT s panTro1.chr17 2050113 25 + 73346066 ATTTTACAAACTGATCATCATTCCT s mm5.chr10 54698908 25 - 130633972 TTTTAACTACCTGATATTCTTTAGG s canFam1.chr26 12889607 25 - 41009621 ATTTTACTAACCAGTGATCATTAAG a score=96548.0 s hg17.chr13_random 69495 426 + 186858 CATGGC----ACGGGTCCATGTGATATTAAGTAGCTTGTTATGTTTGGGAAAGGCAGT-GATGACCACAAGAATGACTTCAACTACTAAAGTACAATGGAGATTTCAACAATG--TT-TTGTTTA-------AA------TATTTCATTGTGC--TCCCAGGCTTTTTCTCA---CCCTAATAGCTCTCATCCATATAATGTTGGTCCCATTAATACAGATACCTCCGAATGCACCACTCTTCCATTATATCCAGTCAATTGCTGGTTACCTTGGGCCTACAACTGTGGGAGGGCAGGGG--------CTGCTGGCCACCTGCTCATCTACAGT--AAGAGTCAATGAGCAGTTAAGTGGATACTGATAACCATTTATCCTGCTGGAGTGAGAAATAAATGGTTTCTTTCAACAGCGTAGTAAAATGCATCTTTTCCAAACTATTTATATG-------------ACTCAAGGCCC s panTro1.chr17 2050138 431 + 73346066 CATGGC----ACAGGTTCATGTGATATCAAGTAGCTTGCTTTGTTTGGGAAAGGCAAT-GATGACTGCAAGAATCACTTCAAAAACTAAAGTGCAATGGAGATTTCAATTGTG--TT-CTGTTTAATATTTGAA------TATTT-ATT-TGCATTCCCAGGTTATTTCTCA---TCCTAATAGTTCTCACCCACATCATGTGGGTCCCATTAGTACAGGTATCTCCGAGTGCTCCACTCTTCCATTACATTGAGTCAATTGCTCATGACCTTGGGCCTCCAACT-----------GGGGCTATTTTCCTGCTATCCATCTCCTGGTCTATAGTAAAAGAGCCAATGAGCAGATAAGTGAATACTGAAAAACATTTTCCCTGCTGGAGTGAGAAATAAATGGTTTCTTTCAATAGGGTAGTAAAATGCATCTTTCCCAACCTATTTATATG-------------ACTCAAAGCC- s mm5.chr10 54698933 401 - 130633972 CACGGC----ATGGGCCCA-GCAAGGTCAAGCAGTTTGACTTTCCCTGGAAATCTAATGGAAGAACGGGAGGTTCCTGTCAGGAATGAAGGAGCCGGGCATACTGC---------TT-TTGTTTAATCTTTAAATCACGGTGTTT-----TTC--TGGCAGGATATTTGGCATGGTCCTAATCGCCGTCA---GCATCCTGTGGGTCCCACTGGTCCAGGTGTCACAGAATGGACAGCTCTTCCACTATATTGGCTCAGTTTCTAGCTACCTTGGGCCTCCCCTT-----------GGTGCAGTCTTCATGCTTGCTATCTTCT--TCAA------AAGGGTCAATGAGCAGGTAAGGGAAACTTGAGGAGTAC---ACGTGCGAGAATGAGGGGGAATT-------------AGAACAATAAAG-GAATCCTGTCCAATCTACGTCTGTA-------------ACTTCAGGCCC s rn3.chr20 42415771 424 - 55296979 CATGGCGACAGCGGGTTCATGTCAGGTCAAGAAACGTAGTTTTGTTTGAACA---AGT-GAACGGCATGTGGATATAGTCAAGAACT------CAACAGATATGCCTACGGTA--TTGTCGCTTACTGTCTGAAT-----TATCT----------CTTCAGGCTGTTTGTCT---CCGTGCTAATTGTTACCAGCATCTTGTGGGTCCCCATCGTAGAAGTATCTCAAGGTGGACAGCTGATCCACTATACAGAAGCAATTTCCAGCTACCTTGGGCCCCCCATT-----------GCAGCCGTCTTC---CTGGTCGCCATCT--TCTGTAA---AAGAGTCAATGAACAAGTACGTGAAAAACCGGGAG-GTCTCTCCCGCCAGTGTAAGAAATCG-TGGTCCCTCTCACTGGTCTCACACGATACTCCCTTGCATTTCCACGTGTACACGCTAGTGCGTACACTCCAGGCCC s canFam1.chr26 12889632 420 - 41009621 CATGGC----ATGGCTTCATGTGAGGTTGAGT---TTGATTTTATTTGGAAAATCAATGAATGGCCACAAGAATGAATTTAAGAACTAAAGAACAATAGAAGTATTGATAATGCTTT-TTGTTTAATATTTAAATCATTTTGTTT-----TCT--CCTCAGGCTATTTATCA---TTCTATTAATTGTCATCAGTATTTTGTGGGTCCCATTAGTGCAGGTATCTCAAAATGGACAACTGTTCCATTATATAGAATCAATTTCTAGCTACCTTGGGCCTCCTGTT-----------GCAGCTGTCTTC---CTGCTTGCCATCT--TCTGTAA---AAGAGTCAATGAACAAGTAAGTAAAAATCAGAAAACTTCTTCCCTGCTAGAGTAAGAAAG---TTAATTCTTTCACTGG--TAGAAAAATGCATTCTTTCCACTTTGTATATACA-------------ACTCAAAGCCC a score=16538.0 s hg17.chr13_random 69921 48 + 186858 ATCTCAATTTCAGATGTGGTTAGCCTCAATTCCTGATTCTCACCAAGG s panTro1.chr17 2050569 38 + 73346066 ----------CAGATGTGGTTAGCCTTAATTCCTGATTGTCATCTATG s mm5.chr10 54699334 48 - 130633972 ATTTCAACTTTACTTGTGGTAAGCCACAGTTTATAATCCTCACGAAAG s rn3.chr20 42416195 47 - 55296979 GTCTCAGTTTCTACTGTGGTCA-TCGTAATGTCTGATCCTTACTAAGG s canFam1.chr26 12890256 48 - 41009621 aTCTCAATTTTAATTGTAATCAGCTACAATTCCTGATTCTCACTAACG a score=91.0 s hg17.chr13_random 69969 1 + 186858 T s canFam1.chr26 12890304 1 - 41009621 T a score=273.0 s hg17.chr13_random 69969 1 + 186858 T s panTro1.chr17 2050607 1 + 73346066 T s mm5.chr10 54699382 1 - 130633972 T a score=-1269.0 s hg17.chr13_random 69970 9 + 186858 GTGTAA------------------------------------------------TGT s panTro1.chr17 2050608 57 + 73346066 GTGTAAATACATAGAACATACATATTCTAGTCTCTATTTCTTATGAAATGTTTTTGT s canFam1.chr26 12890305 12 - 41009621 GTGTAAATA---------------------------------------------TGT a score=7424.0 s hg17.chr13_random 69979 60 + 186858 CATCCACA--GCCCAGTGCAGAGGAACACAGGTGCTGCCGTTAGACTGCCAGGGTCCGATCC s panTro1.chr17 2050665 61 + 73346066 C-TCCCcatggcacagtgcagaagaacacaggtgtttgtgtcagacagccagggtccaatcc s canFam1.chr26 12890565 60 - 41009621 --CATACatgacgtgatgctaaggaacacaagttttggagtaagactgacaggatccaatcc a score=5894.0 s hg17.chr13_random 70039 65 + 186858 CTCCTCCTCACTCACCCCGGGAGATCCCTTTAAGCCAGGAGTCAACAGTGAGGATGGAAACATGA s panTro1.chr23 19940711 65 + 50034486 CTCCTCCTCACTCACCCCTGGAGATCCCTTTAAGCCAGGAGTCAACAGCGAGGATGGAAACATGA a score=2720.0 s hg17.chr13_random 70104 15 + 186858 GTGCTTTTTAAAGTC s panTro1.chr23 19940776 15 + 50034486 GTGCTTTTTAAAGTC s rn3.chr17 23536433 15 + 97307196 GTGCATTTCCAAGTA a score=7560.0 s hg17.chr13_random 70119 59 + 186858 CTGAAAGTTCAGAGGCCGACTGT-CAGTTTCTCCTCCACCCCTGAGCACACACCAGGAGA s panTro1.chr23 19940791 59 + 50034486 CTGAAAGTTCAGAGGCAGACTGT-CAATTTCTCCTGCACCCCTGGGCACACACCAGGAGA s rn3.chr17 23536448 59 + 97307196 ACAGAAGGTAGACAGCCAACTGT-CAGCCTCTCCTCCTCTCCTGGAGACACACCACAGGA s canFam1.chr26 20214897 58 + 41009621 CTGAAGCTGCAGAGGGAGAGGGTGCATAGCTTCCCCCAGCACCTGGCTCAGACGGAAG-- a score=19709.0 s hg17.chr13_random 70178 140 + 186858 ACTCTGTCTCCGGGTTGAAGGAAGTGCCTGTGAGAGAGTTGTG-TCCCTCAGATTCTGTTCACCACAGG-TGA---CACTCGATGCAACCCCAAACCTCTTCTGCAC-AATCCCAAGGGGTGCTGACTAATCCAACCCAAAGGCTG s panTro1.chr23 19940850 141 + 50034486 ACTCTGTCTCCAGGTTGAAGGAAGTGCCTGTGAGAGAGTTGTG-TCCCTCAGATTCTGTTCACCACAGGCTGA---CACTCGATGCAACCCCAAACCTCTTCTGCAC-AATCCCAAGGGGTGCTGACTAATCCAACCCAAAGGCTG s canFam1.chr26 20214955 141 + 41009621 CCTCTGTCTCCAGGGT----CAGATGTGTATGGGAGAGCTGTGTTTCCAGAGATTGCCTCCATCAGAGG-TAAGTGCAAAAAACCCAAACACAAACCTCTCCTGCTCTATTCCCAAAAGATGCTAATCAAACATAACCAAGGGCTT a score=17516.0 s hg17.chr13_random 70318 110 + 186858 TGATGTTTGGCAGAGGCAGAAAAGAAAAGGCCAGGTGTTCTGGGAAAGACCACCTTCAA--------------------ATAACACAGCACCCTCATAGCCCAGAGAGACAGT---TCTAACTATTATGCCAA s panTro1.chr23_random 4625801 110 + 16744317 TGATGTTTGGCAGAGGCAGAAAAGAAAAGGCCAGGTGCTCTGGGAAAGACCACCTTTAA--------------------ATAACACAGCACCCTCATAGCCCAGAGAGACAGT---TCTAACTATTATGCCAA s canFam1.chr26 20215096 133 + 41009621 TCATGCTTGGCAGTGACAAAGGGAGCCAGAACTGGTCTTCTGGGAAAGATAATCTTAAATACCAAATAAAAAAAATATGATTACAGAGCACACTCAAAGCCCAGAAACAGAATACCTCTTACTATTATACCAA a score=-66.0 s hg17.chr13_random 70428 4 + 186858 T-AAA s panTro1.chr23_random 4625911 5 + 16744317 TAAAA a score=491.0 s hg17.chr13_random 70432 5 + 186858 CCTGG s panTro1.chr23 22149488 5 + 50034486 CCTGG a score=38358.0 s hg17.chr13_random 70437 279 + 186858 AAAAGACCAAATACAGTATG-ACACATATTTCCTGTTTCATTTTGATTTCATGCC-CCCTCCCTTAACCTCCCAAGCAGCATGGATACCCCGAAGGCCCCTGGGAACTCTCTCCCATTGGATCTTACGTGGAAAGTAGTTACCTACCTAC-AAATCCCCATCATCGG------------ATATGCTCTCCACAATCAAATCTTCAGAAACACAAACACCAGGAT-AAGTCATTAGAGAGAGTCCCACCCA---CTCCCACCCCAGCTGAAGCCATGGTGCTTCGCACAGGATCCCCTg s panTro1.chr23 22149493 282 + 50034486 AAA-GACCAAATCCAATTTG-ACACATATTTCCTTTTTCGTTTTGATTTCATGCC-CCCTCCCTCAACCTCCCAAGCAGCATGGATACCCCGAAGGCCCCTGGGAACTCTCTCCCATTGGCTCTTACGTGGAAAGTAGTTACCTACCTGCAAAATCCTCGTCATCAG------------ACATGCTCTCCACAATCAAATCTTTAGAAACACAAACATCAGGAT-AAGTCATTAGAGAGAGGCCCATCCACCCCTCCCACCCCAGCTGAAGCCTGGGTGCTTCACACAGGATCCCCTG s canFam1.chr26 20215438 296 + 41009621 AAAAGAACAAAACCATTCTATACTTTTACTTCCTTTGCCTATCTGATTTCATACCTCCCACTGTCAGTCTACAAAGCAGCAAATGTATCCCGACTGCTCCCAGGAACCATCTCCCATTGATTCCCACCTGACTGG--GTTCCCTATCTGAAGAGTCTTCATCCTTAGTACTGGAGGGATATATACTCTCCACCACCCAATCTTTAGAGACACAAGCATGGGCATCAGGTTATTAGAGAGCATTTCCCCTGTTGCTGCTACTCTAGCTGAGGCCAGGCTGGCTTACCTGGCAACACCTG a score=533.0 s hg17.chr13_random 70716 7 + 186858 gtgtttc s panTro1.chr23 22149775 7 + 50034486 ATGTTTC a score=46705.0 s hg17.chr13_random 70904 567 + 186858 ctgcagcttccacctccgagatttaagcgattctcatgcctcagcctcctgagtaactaggactacagatactcaccaccacgcagggattttttttttctatttttttgtagagacacggtttcaccatgttggccaggctggtctcaaactcctgaccttaggtgatcggacagcctcgttctctctaagtactggaattacaggcatgagcc-ccttgcccggccTCTCACTACATTTAAGTgacgccatggctcatgcctgtaatcctagcactttgggaggccaaggcaggtggatcacctgaggtcaggagttcgacacaagcctggccaacatggggaaaaaccgtctctagtaaaaatacaaaaattagtcaggcgtggtggtacaagcctgtaggcccagctacttggaagactgaggcaggagaatcactttaaccgggaggcagaggttgcagtgagccaatatcatgccactgcactccagcttgtgtgacagagtgagacactgtctcaaaaaaaaaagaaaaaa-aaaaga---gaaaaaaATATGATGCCGGGGCAT s panTro1.chr21 24281185 571 + 65473740 ctgcagcctacgcctccgaggtttaagcgattctcatgcctcagcctcctgagtaactgggactacaggtactcaccaccatgcagggatattttttt-ctatctttttgtagagacacggtttcaccatgttggccaggctggtctcgaactcctgaccttaggtgatctgacagcctcgtcctctcaaagtactgggattacaggcatgagtcaccatacccggtcTCTCACTACATTTAAGTGATGCCAtggatcatgcctgtaatcctagcactttgggaggccaaggcaggtggattacctgaggtcaggagttcaacacgagcctggccaacatgcggaaactccgtctctagtaaaaatacaaaaattagtcaggcgtggtggcacaagcctgtaggcccagctacttggaaggctgaggcgggagaatcactttaactgggaggcagaggttgcagtgagccaatatcatgccactgcactccagcttgggtgacagagtgagacatcatctcaaaaaaaaaaaaaaaaagaaaagaaaagaaAAACATATGATGCCGGGGCAT a score=55790.0 s hg17.chr13_random 71471 392 + 186858 CTCAGCCTAAATACCTGCGTGAGCACAGTCATGTCCAGGCCAGGGCTGCTGGTCGAGGTCCAGCCCCATCTCTTCCAGCAGAAAGGGAGTAAGCTTGTGGGGTggctggggg---acaagatcccaggaacttggcctctgctcatggatcagctctgagaccccaagt----gagctgggggt---gctctgtgcgcatgggtttccccagctgtcaagtaaagggattggatgagGAAGTGT---------TGTCAAGGTGGAATGATCTCAGATTTGGG-CAGCAGTGAATGATCCCACTCCCTGGGCCATGCCAGTGGCCTGGCCTCGGCTGAACACAGCCCCAACACTCTGGAATGGGGATGAGGGGGCAGTCAGCTC---------------TTGCTCCTAG-TAAGAGAGATGCAACAGGG s panTro1.chr21 24281756 393 + 65473740 CTCGGCCTCAATACCTGCATGAGCACAGTCATGTCCAGGCCAGGGCTGCTGGTCGAGGTCCGGCCCCATCTCTTCCAGCAGAAAGGGAGTAAGCTTGCAGGGAGGCTGGGGG---ACAAGATCCCAGGATCTCAGCCTCTGCTCATGGATCAGCTCTGAGACCCTGAGT----GAGCCGGGGGT---GCTCCGTGCGCATTGGTTTCCCCAGCTGTCAAGTAAAGGGATTGGATGAGGAAGTCT---------TGTCAAGATGGAATGATCTCAGATTTGGGGCAGCAGTGAATGATCCCACTCCCTGGGCCATGCCAGTGGCCCGGCCTCAGCTGAACACAGCCCCAACACTCTGGAATGGGGATGAGGGGGCAGTCAGCTC---------------TTGCTCCTAG-TAAGAGAGATGCAATAGGG s canFam1.chr26 10985187 387 - 41009621 CTCAGCCCGTGTGCCCACATGGGGACTTACACATCTAGGCCAAGGCTGGTGGTCAAGGTCTCGCCCTGTCCCGTCCTGCAGAAAGGGAGTGAGCTCGGGGGGAGG--GGGTGTCAGCAGGACACAGAGGTCCTAGCCTCAGCTCATCAACCAGCTCTGGGATACCAGGGTGCAGGGGTGGGGGTAGGGTTTCACGTgcctcagtttccccatctatcaagtaaagggattggaccaagaggcctctgagggccctttgaggtggga-gatctcagattcAGG-------------ATCACA-------------------GGCCTGGGCTCTGCTGGACGTGGTGCCTGTTCT------TAGGAATTTGGGTGCAGTCAACTCAAAAGACTAAAATATCAAATCCTAGTTAAGAGCGATACAGTAGGG a score=6068.0 s hg17.chr13_random 71863 69 + 186858 CTCTGTGGCTGagctgggtgccttgcctcacaccggtaatcccaacctttgagagaccgaggcaggagg s panTro1.chr21 24282149 69 + 65473740 CTCTGTGGCTGagctgggtgccttgcctcacacctgtaatcccaacctttgagaggctgaggcgggagg a score=7045.0 s hg17.chr13_random 71932 83 + 186858 attgctccaggctgggaattttgagaatagcctggacaacatagccagaccccatgtctacaaactaataataaaacacacag s panTro1.chr23 17046561 83 + 50034486 attgctcgaggccaggaattttgagaatagcctggacaacatagccagaccccatgtctacaaaataataataaaacatacag a score=30826.0 s hg17.chr13_random 72015 500 + 186858 ctatagtccaagctacttggcaggctgaggcaggag---ggtcccttgagtccaggaattggaggc------tgcattgagctataatcacaccactgcactccagcttgggtgacaaagtgagaccctgtctctaaaagaaaaaaaaTTGGCCTGTGAGCATGGGTTTGATTTTCAAACAGGACCCGGAGGGTAGGGTAAACGTGTGGGTAAATCTAAATGAATGTTATTGGTATAAAattacagtagtatagaaaatgatatcttgtggggtttaaaataaac-atactgaaatatgtatgggtacagttatatatctgggatttgcactgaaataatgtggggtagagggaagcaggaaagagtatacatgaaatgagcttggccataagattgttgttgaaattgaatggatacgtggggcttcattacacaattctctttactcttacataGCTCTACACTCTCAACATAAATAAGAATAAAAACACAAAAAACACACAGGTACA s panTro1.chr23 23012403 460 + 50034486 ctgtagtcccagctactcgggaggctgaagcaggagaatgg---cgtgaacccagga------ggcagagcttgcagtgagccgagattgcgccactgcactccagcctgggcgacagagcgagactctgtcccaaaaaaaaa--------------------GGGT----------AACAGAA----GAGG------TAAACGTGTGGGTAAATCTAAATGAACGTTATTGGTATAAAATTATAGTAGTATAGAAAATGATATCTTGTGGGGCTTAAAATAAAAGatactgaaatatgtatgggtacagttatatatctgggatttgcactgaaataatgtggggtagagggaagcaggaaagagtatacatgaaattagcttggccataag-ttgttgttgaaattgaatggatactcggggcttaatgacacaattctctttactcttacataGCTCTACACTCATAAGATAAATAAGAATAAAAACACAAAAAACACACAGATACA a score=22576.0 s hg17.chr13_random 72515 244 + 186858 TCTATGCACACACACATATTtaaaatacacaaaaatattagcatataagtcactgggggtaaatttagttcctgttccaaggttcttgtactgactaggaagaggatagaagtactaactcataggctgggcgcggtggctcacgcctgtaatcccaacactttaggacgccgaggtaggcagatctcttaaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtgtctact s panTro1.chr23_random 5739078 244 + 16744317 TCTATGCACACACATATATTtaaaatacacaaaaatattagcatataagtcactgggggtaaatttagttcctgttccaaggttcttgtactgactaggaagaggatagaagtactaactcataggctgggcgtggtggctcacgcctgtaatcccaacactttaggacgccgaggtaagcagatctcttaaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctact a score=72923.0 s hg17.chr13_random 72759 925 + 186858 aaaaaagaatacaaaaattggccgggcataatggtgcacacctgtggtcccagctactcaggtgactgaggcaggagaattgcttgaacccaggaagtggaggttgcagtgaaccaagattgctccactgcactccagcctgggcagcagaggaagactctctctatctcaacaacaa---------caacaaaaagtactagctcatgttagactttgataagtgaaggatgc-atgttgtaagctc-aaaataatcca--gtcatcttttaaaataactctaagactgcacagttatgaaactaatagagaaggaggaaattaaataataaaaataataaatccaaaacaagatgtgagaggagataagaagaaatagaataggcatggaaaacaaattggtggtgggtttcaacccaaataaatcattagttacatttaaaaggacaat----aaaaattaaaataattgaaaataaagtaaaacccaactaatgccttttatataaggatacagagaggtggaaaataatgaaaaataagtcatgcatgcactaaccaagaaagctgtataactttttttttttttttttggagatagagtctcactctgtctcccaggctggagtgcagtgatgtgatcttggcttacagcaatccctcccttctaggctcaagcgattctcccacctcagcatcccaagtagctgggactacaagtgtgccaacttagaattatattagccacacccagctaattttcgtattttttgtagaggcagggtctcgccatgttgcccaggttggtcttgaactcctgggcttcagtgatccacccacctcgaactccaacaaagtgccaagattacagccatgagccaccatgcccagcataactatttttaatgaagtagactttaagaagaaa-gtattattagagg s panTro1.chr23 23013582 935 + 50034486 aaaAaagaatacaaaaattagccgggcatagtggtacacacctgtggtcccagctactcaggagactgagacaggagaattgcttgaacccaagaggcggaggttgcagtgaaccaagattgctccactgcactccagcctgggcagcagagcaagactccctctatctcaagaaaaaacaaataaacaaaaaaaaGTACTAGCTCATGttagactttggtaagtgaaggatgctatgttgtaaactctaaaataatctactgtcatcttttaaaataactccaagactgcacagttaggaaactaatagagtaaaaggaaattgaataataaaaataataaatgcaaaacaagatgtgaaaggagataagaagaaacagaataggcatggaaaacaagttggtgatgggtttcaacccaaataaatcatcacctacttttaaaaggacaatcaataaaaattaaagtaattggaaataaagtaaaacccaactaatgccttttatgtaaggatacagaaaggcggaaaataatgaaaaatatatcatgcatgcactaaccaagaaagctgtataactttttttttttttt----gagatagagcctcactctgtctcccaggccggagtgcagcgacgtgatcttggctcacagcaatctctcccttctagcatcatgcgattctccctgctcagcctcccaagtagctgggactacaagtgtgccaacttagaattatattagccacacccagctaatttttgtattttttgtagaggcagggtctcaccatgttgcccaggctggtcttgaactcctgggcttcagcgacccacttaccttgacctcc--caaagtgccaa--ttacaggcatgagccaccatgcccagcataactatttttaatgaagtagactttaagaagaaaagtattattagaga a score=5923.0 s hg17.chr13_random 73684 36 + 186858 taaGAGACACATCACGGAAAAGAAGAATTTACTAGG s panTro1.chr23 23014517 36 + 50034486 taaGAGACACATCACAGAAAAGAAGAAATTACTAGG s canFam1.chr26 10639409 36 - 41009621 TGGGAAAGAGAACAGAGGAAAGAAGAGGTTTCTAGG a score=22609.0 s hg17.chr13_random 73720 308 + 186858 agccaggcgcagtggctcatgcctgtaattccagcactttgtgaggccaaggcgg-tggatcacctgaggttgggggttcaagaccagcctgaccaacatggagaagccctgtctgtactaaaaatacaaaaattagccaagcatggtggcacatgcctgtaatcccagctactcaggaggctgagggaggagaattgcttggacccaggaagtggaggttgtggtgagctgagattgtgccattgcattccagcctgggcaacaagagcaaaactctgtctcaaaaaaaaaaaaaaaaa--------GTTACTAGC s panTro1.chr23 23014553 316 + 50034486 AGAcgggtgcagtggttcatgcctgtaatcccagcactttgggaggccaaagcgggcagatcacctgaggtcgggagtttgagaccagcctgacccacatggagaaaccctgtctctaccaaaaatacaaaa-ttagccaggtgtggtggcgcatgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccaagatcgtgctattgtactccagcctgtgcaacaagaacaaaactccatctcaaaaaaaaaaaaaaaaaaaaaCGAGGTTACTAGC a score=89647.0 s hg17.chr13_random 74028 614 + 186858 TAGTTTCAGTAATTCTTAACATCCAGGAAACTGGATgtgaaagcttttc-agagaaactaaaccaatagattatacata-gagagaga--tttattt--aggaattggctcacatgattgtggggactagcaagtttaaaatctgtagggcaagccagcaggctataaattcaggtaagggttgatctcgaagtctggaacctaacatctgtagagcagtcagcaggccagaaactcaggcagggtttctgtgttacagtcttgaag-cagaattcctgcttctctgggaaacct--gtttttgttcttaaggccttcaactgattggaggtggcccacccatattatggtgggtaatctgttttacttaaagtcaattgactgtcagtgttaaccacatctatgaaataacctcccagcaagatattgacaagtatttgaccaaacaacggggcaccatagcttagccaagttgacacataaattaaccatcaGGAACGAGTAGAATATCCAAAAAACAACATACTAGGGGTATTATATCTTATATAGC---aattataattatataaaacatataattataGAATGAAGATATTAA------GATAACCATTAGAACAAAAATATAAACt s panTro1.chr23 23014869 614 + 50034486 TAGTTTCAGTATTACTTAACATCCAGGAAACTGGATATAGAAGTttttttagagaaactaaaccaataggttatacata-gaga------tttattt--aggaattggctcacatgattgtggggactagcaagtttaaaatctgtagggcaagccagcaggctataaattcaggtaagagttgatctcgaattctggaacctaacatctgtagagcagtcagcaggccagaaactcaggcagggtttgtgtgttacagtcttgaaggcagaattcctgcttctctgggaaacctcagtttttgttcttaaggccttcaactgattggaggtggcccacccatattatggtgggtaatctgttttactcaaagtcaactgactgtcagtgttaatcacatctatgaaataacctcccagcaagatattgacaagtatttgaccaaacaacggggcaccatagcttagccaagttgacacataaattaaccatcaGGAGCGAGTAGAATATCCAAAAAACAACATACTAGGGGTATTATATCTTATATAGC---TATTATAATTATATAAAACATACAATTATAGAATGAAGATATTAA------GATAACCATTAGAACAAAAATATAAACT s canFam1.chr26 10639445 515 - 41009621 TAGTTTCAGTATCACTTA--------------TAGTAGAGAAGTCCT-----------CAATctactgggatagacggaggagagagatttttattctgaggaattggttcatattattgcagagactggcaagttcaaaatctgtagggcaggccaggaagat-----------------------------------------------------------------ggaaattcagacaggatttttatgttacagattcaagg-ctgaattccttcttctctgggaaatct--ggttttgcatttcaggtctttaactgattggatgtggcccacccatgtttta--agataatctgttttacttaaagtcaactgaatg-aaatgttaattacatctacaaaagaccctcagagcaacatctagactagtatttgaccaaaagactgggcactatagcctagT----------------TTAACCATCAGAGGAGTAAAGAATTTCCCTCAAAAGAAGAACTA-AAGTACCATAT-TTATATATCTAATATTGTAATTACATATAATATATG---ATACAATAAAGATATCAACAGAAGTATAACTATTAGAACAAAAACACAAACC a score=23068.0 s hg17.chr13_random 74642 270 + 186858 tttctttct---tttttttttttttttgagaccaagtcttgctctgtcacccaggctggagtgcagtggtg-------caatcttggcttactgcaacatttgcctcctgggttcaagtgattttcctgtctcagcctcccaagtagctgggattacaggcacccactaccatgcccagctaatttttgtatttttagtagagacgtgttttcaccatgttgcccaggctggtctccaactcctgacctcacgtgagccacccccctcggcctcccaaag s panTro1.chr23 23015483 280 + 50034486 tttctttctttctttctttctttttttgagaccaagtcttgctctgtcacccaggctggagtgcagtggcgttgcccacaatcttggcttactgcaacctttgcctcctgggttcaagtgattctcctgtctcagcctcccaagtagctgggattacagggacccgctaccatgcccagctaatttttgtatttttagtagagacatggtttcaccatgttgcccaggctggtctccaactcctgacctcaagtgagccacccccctcggcctcccaaag a score=7975.0 s hg17.chr13_random 74912 88 + 186858 tgctgggattacaggtgtgagccaccacacccagccAAAAATCACCTTTTCTACAAGGATCAAAACAGTTATTATGCTGGAGATGACA s panTro1.chr23 28612572 88 - 50034486 tgctgggattacaggtgtgagccaccacacccagccAAAAATCACCTTTTTTACAAGGATCAAAACAGTCATTATGCTGGAGATAACA a score=28133.0 s hg17.chr13_random 75000 149 + 186858 GACCTCACTGTCACCATGCTCCTTTTGTATGTCTACTAGGCACGGTGCTGGGTCCACACTCACACAAAGCTTAGGAGCTCGCACCCAGGGGCTCCAGCTGTAGCAG----AATCCTAAGAATAAAACCTGGTGCTGAAAGAGTAGGAGATGAg s panTro1.chr23 28612660 149 - 50034486 GACCTCACTGTCACCATGCTCCTTTTGTATGTCTACTAGGCACGGTGCTGGGTCCACACTCACAGAAACCTTAGGAACTCGCACCCAGGGGCTCCGGCTGTAGCAG----AATCCCAAGAGTAAAACCCGGTGCTGAAAGAGTAGGAGATGGG s canFam1.chr26 10647632 150 - 41009621 GACCTCACTGTCACTGTGTGTCTATT---TATCCACTACTCATGGTGCTGGGTCCTCACTCATGCCAACCTTAAGAACCCGCCCCCAGGGGCTCTGGCTGTAGAAGGCCCAGCCCAAAGGGGCAAACCTGGTGCTGGTAGAATAGGAGATTGG a score=5717.0 s hg17.chr13_random 75149 95 + 186858 gccgggcgccatgactcattcctgtaatgctagcactttgggaggccaaggtgggctaatcaagagatagagaccat-ctggccaacatggtgaaa s panTro1.chr23 28612809 93 - 50034486 gctgggcgccacgactcactc---taattccagcactttcggaggccaaggcaggcgaatcaagagatagataccatcctagccttcatggtgaaa a score=11594.0 s hg17.chr13_random 75256 162 + 186858 taaaaatacaaaaattagctgggcatggtggctggcacctgtagtcccagctactcaagaggctgaggcaggagaatcatttgaaccgag-gaagcagaggtttcagtgagctgagatcgcgccactgcactccagcctggtgacagagtgagacaccgtctc s panTro1.chr23 23016110 160 + 50034486 taaaaatacaaaa-ttagctgggcgtg-tggctggcacctgtagtcccagctactcaggaggctgaggcaggagaatcatttga-ctgagaggggcagaggttgcagtcagccgagatcacgccactgcactccagcctggtgacagagcgaaacagcatctc a score=2347.0 s hg17.chr13_random 75418 25 + 186858 aaaaaaaaaaaGCAGGACACTGAAC s panTro1.chr23 26609588 25 - 50034486 aaaaaaaaaaaGCAGGACACTGAAC a score=7898.0 s hg17.chr13_random 75443 50 + 186858 TCTGGGAGGGCCTCCTGGTGAGAGGTGAGCACAGAGGGGAGAGATGGAGG s panTro1.chr23 26609613 50 - 50034486 TCTGGGAGGGTCTCCTGGTGAGAGGTGAGCACAGAGGGGAGAGATGGAGG s canFam1.chr26 10647783 49 - 41009621 TCTGGGAGGCCCCGATGGTGAAAGGAGATGGT-GGGAGGGGAGCTGGGGA a score=96958.0 s hg17.chr13_random 75493 1012 + 186858 CAG----GAGCATGGGCTTCTGGTGGC------------CCCAGCAGACCCCGTGGCAGTG----TGGCCAGG-GTCCTCTGCAGGGAGGA---------------------ATCTTGGCCAGGATG-ACGATGTAGCAGGCCTCTTCCTGAGGCCTCCAGCCAGCCCGGCCAGGGTCCCAGCATCCAGTGACCCCTGTTTCACAGC-AGCAGCTGGGGCCAGCCCCAGGCTCTCTTCCACTCTCAGCTTCTTAAAACTGGAAGTGGA----GAGA-----GTTGTTTGATAAA-ACAC-------------------------TGGGGCAAACCACATC---CTCTCTTCACCAAGGGAGAGTTCGAGGGGATGCCGGCAGAGGGAGCTTTAGAGTAGAGACCCCTACCCAACCAGTGACCATCACGCACACAGCAAGGCATGCTATGGAGACCCCCAGACAGTCACTCGGTGAGACCCAGCAGGTCCAGA----CTCTTCAGAGATCTGTGGCAGCAGGTCCC--CACTCCCAAAAGCCACG-TGCCCATGGGTGGTCTCTGGTGCCTGAG-----------ACCCCA-GTCTCATTTGCATCTTTGCAACTTCGA--GTT---------TAAGTGGGTG----TCGCATCCCTGTATGTGCTCCTGAGCA---GAGGAGGGGCACAGCCCGGGGTGGCAGCTGGCGTCAAACCCTCAAATCCCCTGAGAGCCACTGGGGAGACTAAGCAGTCCCCAGCCC-CCACTTGTCCCTGAGCTGCCATTCTCA------GCCCTGTGGGA-GGAGACAGAAAGCCCTAAAGA-------GAAACCAAAGGACCAGGTCAGGAGGGGCTGGGG-----GGTGGTGTGAGC---------------------------------AATCAGGGCAG--------------------------------------------------------------------------------------------------ggaaggatggacagatgggggaatggagggaa---------------------------------------------gaaggaatgaatgaaa----------------------------------aggtgaatgaat------------------gaaCAAAGAGAG------------------------------------------------------------------------------------------------------------------AGAAC--GGCCACTCCT---------------CCCTTGCTTTAGTTTACAAAGTACTG-GGATCCTCCCAACAG-CCTGCAAGACAGAATTTCTGGGAAGCAGA-CCAGGTGGCTGGCAGGGA-GGGGAGGCTTGCCCTGG--CTTTTGTGGGCCCAATGGGAGGCAGGG-GGCAGGAAGGGGCATCCTG-TAT--GTGTCCTCCCTG---- s panTro1.chr23 26609663 1016 - 50034486 CAG----GAGCATGGGCTTCTGGTGGC------------CCCAGCAGACCCTGTGGCAGTG----TGGCCAGG-GTCCTCTGCAGGGAGGA---------------------ATCTTGGCCAGGATG-ACGCTGCAGCAGGCCTCTTCCTGAGGCCTCCAGCCAGCCCGGCCAGGGACCCAGCATCCAGTGACCCCTGTTTTGCAGC-AGCAGCTGGGGCCAGCCCCAGGCTCTCTTCCACTCCCAGCTTCTTAAAACAGGAAGTGGA----GAGA-----GTTGTTTGATAAA-ACAC-------------------------TGGGGCAAACCACATCC-TCTCTCTTCACCAAGGGAGAGTTCGAGGGGATGCCGGCAGAGGGAGCTTTAGAGTAGAGGCCCCTACCCAACCAGTGACCGTCACGCACACAGCAGGGCATGCTATGGAGACCCCCAGACAGTCACTCGGGGAGACCCAGCAGGTCCAGA----CTCTTCAGAGATCTGTGGCAGCAGGTCTC--CACTCCCAAAAGCCACG-TGCCCACGGGTGGTCTCTGGTGCCTGAG-----------ACCCCA-GTCTCATTTGCATCTTTGCAACTTTGT--GTT---------TAAGTGAGTG----TCGCAT-CCTGTATGTCCTCCTGAGCA---GAGGAGGGGCACAACCTGGGGTGGCAGCTGGCGTCAAACCCTCAAATCCCCTGAGAGCCACTGGGGAGACTAAGCAGTCCCCAGCCC-CTACTTGTCCCTGAGCTGCCATTCTCA------GCCCTGTGGGA-GGAGACAGAAAGCCCTGAAGA-------GAAACCAAAGGACCAGGTCAGGAGGGGCTGGGGGGGGCGGTGGCAAGAGC---------------------------------AATCAGGGCAG--------------------------------------------------------------------------------------------------ggaaggatggacagatgggggaatggagggaa---------------------------------------------gaaggaatgaatgaaa----------------------------------agttgaatgaat------------------gAGCAAAGAGAG------------------------------------------------------------------------------------------------------------------AGAAC--GGCCACTCCT---------------CCCTTGCTTTAGTTTACAAAGTACTG-GGATCCTCCCAACAGCCCTGC-AGACAGAATTTCTGGGAAGCAGA-CCAGGTGGCTGGCAAGGA--GGGAGGCTTGCCCTGG--GCTTTGTGGGCCCAAATGGAGGCAGGGCCGCAG--AAGGGCATCCTG-TAT--GTGTCCTCCCTG---- s mm5.chr10 55171232 1279 - 130633972 CAG----TAGGGGGGAATACCAGTAGC------------ACCAAGACTTCCC---ACAGTGACACTGGCCAGG-TTCTTCCCCCGGGCAGACAGCCTAAGTCGAATGAAAAGCTCTTGGCCAGGAGACACACAACAGCA----CCTTCCTGAAGGC-----CTAGTCTGGCTATGGTCAC---------CAAGCACTCTCTTACGGTAAGCAGCTGGGTCCA----TAGGTTCCCTCCCACCCTTGACTTCTTAAAACAAGAACAGGAAGC-AAGA-----AGAGTTTAACAAA-ACAC-----------------------TGTGGGGGAACCCACATC---CGCTTTCCACCAGGGGA-AGCTTGAGAG------------------TTTAGAGTGCAGGCTCTTAGC--ACCAAC------------CACAGCCTGG-----------GCCTCGCAGACCAATGCTC------------CCTGTTCAGAGAGCCTTCTCACAGATA-GTAGAAGCACGCCCCTTTGTTCACAGAGGCTGCTCTTCTGGCTGGTTTTCTGTGGGGCCTGAGCGTGCACACATACCCCA--CCTCAGTTACAATTTTGTATTCTAGAAGGAT---------TAAATAGATG----CTGCAT-----------CTCATG-------GAGACAGAGCA------------ACTGTTGGTCTT-AACTCTTGAGTCCCTTGGGAGCGCCATGTGACGTAGAAAGGACT---GTCC-CTACTGATCC--GGGCTGCTATTCCCATGGAGTTCCAAGTTAAATGTAGATGTGAATCCTCCAGGAAGTCTGGGAACTCAGAGGACCAGGTTAGCA-GGGTTGCGG-----GCTACTGTGAGCGAGGGAGGTGGAAGAGAATGGGTAGACAGATGGAATAAGGGAGGCGGGAAGGAAGGCAGGACAAACAGAAGGAAGGACAGAAGGAAGGAAAGACAGACAGAAGGAAGGACAGACAGAAGGAAGGAAGGATGGACAGAAGGAAGGAAGGATAGACAGAAGGAAGGATGGAAGGAAAAACAGATGAACAGACAGACAGAAAGAAGGATGGACAGAAGGAAGGAAGGAAGGAAGGAAGGACAGATGGTTTGAAGGACAAACAGACAAAGGACAGATGGAAGGAT------------------GGACAGAAGGAAGAAAGGATGTAAGGAAGGAAGAAGGAAGGACAGACAGACAGAAGGTACATTCAATAACAGTCAAAAAAAAGCATAACAGCATGGTATTTT-------------------GGGCCAGGAC--CACCACTCTG---CCTGCTGCAGGACCCAGCCTTGGGTTTACAAAGCACTT-GAACCCTGACAGTGG-GCTACCAGGCAGATATTCTGGGAAGGAGACCCAGATGACCAGAAAAAA-GGAGAGGCTTGTCCAGG---TTTCAGGGCCCCAGTGGGAGGCAGGG-GACCAGGAGTGACTTCTTG-CCTCAGGGTAATCCTG----- s canFam1.chr26 10647832 1023 - 41009621 CAGCACTGAGGAGGGACAGCAGGCTTCAGACAGGCAGTGCCCTTCAGACCCC--TGCAGTGGCA-TGGCCAGGAGTCCTCAAGGGGGTGGA----------------------TTTTAGCCAGGAGG--------------CCCC----------------CCAGCCCAGCCAGGGTCTCTG--------GATCCGTGATCCACAGC-TTTGG--GGGGACAGCTCCAGGCTCCCTCCCACTCCTGGCTTCTTAAAACAAGAAAAGGAAGTGGAGAGTGCTGTTCTTTGACAAACACACAAAATGCAGGGGGCGGGAGGGCTGGGGGGAGAAACCACATCCGGCTCTTCGTACCAAGGAG-AGTTGCAGGGAGCATC-----ACGGA--CTCAGAACAGAGACCCCAACC---CCAAC---TGTCACGTGCACAGCAGACTGTGCCACAGAGAGCCCCCCAAAGT--CTCGGGGAGATACAGTGACCCCAAA--ACCCCCACAGAGAAATGAGGCAGCGGCTCTC---ACTGCTGGCATCTGTG-TCCCTGGCAGTGGTCTCTGGGGCCTGAA-----------GCCCCTGGCACTGTTTGCATCTTTACAACTATAG--GTTGGGGGGTGGGGAGTGGGGGCACTCAGCACCCCTGTATGCTCTCCAGAGCACGCGGGGAGGGGAG------------GC---------------------TCCCCTG----------GGGAGACCAGGTAGCCT---GTCCTCCACTTGTCGCTGTCCTCCTAGAAGGA------GCCCCAAGGGA-GGGGA------------AAGA----------------GGACCAGGTCAGGAGAGACAGATG-----GACGAC---------------------------------------AGACAGAGAAA--------------------------------------------------------------------------------------------------GGAAGGA-----------AGGAGTGAAAAGGT---------------------------------------------GAATGAATGAAACAGA----------------------------------AGGATAAAGCATGTAGGGACGGTGAAGCCAGAACAAAGGTGG-------------------------------------------------------------------------------CACAGAACGCCACCTGCCCAGAGGTGCCCTGAGCCAGGACTTGGCCACACTCTCCCTTGCTCTGGGACTGTCCCCTCGGTTTACAAAGCACTTCTGATCCTGACAATGA-TCTATGAGGCGGTTATTCTGGGAAGCAGACCCAG----CCAGCAGGGAGGGGGATGGTGGCTCAGGCTCCTTGCTGGCCTGGGCTGGGGGCCAAG-GGCCAGGAGGGGCGTCCTGCTAT--GTTCTGCCCCGGTGGG a score=18688.0 s hg17.chr13_random 76505 70 + 186858 CAGCAGCA------GCAGCAC-------------------CTTCCTGGAAGAGGGTCAGGAAACACCCACTGTGGCCCCTCTCCACCACGCCCTC s panTro1.chr23 23018063 89 + 50034486 CAGCGGCA------GCAGCGGAGGCCTCCCTTGGGCTGGGCTTCCTGGAAGAGGGTCAGGAAACACCCGCTGTGGCCCCTCTCCACCACGCCCTC s mm5.chr10 55172511 92 - 130633972 TGGCAGCATGGTGGGTAGCATAGGCTTCCCATGGGCTGGGTTTCCTGGAA---GGTCAGGAAACAACCACTGTAGCTTCTCTCTGCCTCTCTCTC s canFam1.chr26 10648855 79 - 41009621 ---------------CAGCGGAAGCCTCCCACTGGCTGGGCTTCCTGGAAAGGAGTTGGAAAACATCAGC-GGGACCCCTTTCTACCACCCACCC a score=1298.0 s hg17.chr13_random 76575 16 + 186858 ATCCAGGACACCAAGT s panTro1.chr23 23018152 16 + 50034486 ATCCAGGACACCAAGT s canFam1.chr26 10648934 16 - 41009621 TGCCCCTGCCCCGAAT a score=56131.0 s hg17.chr13_random 76591 423 + 186858 ----ATCAGTCACTCAGCTCACGAGACCCAGGCCCTGACTCAGGGAGAGAGGATGTGAGGGGTGGGGCACCGGGCTCCCCAGGACTGAGAGACCTGAGATGTGGCCCCGGGCTGGGTGTTGGGGC---AGACTGGCTAT-GGCAGCATTGTGTGTACCCCAGCAGGCCAGTACCCACGCAGGGAGCCTCCAAACCCCTTCACCCTTGACCCT--GGGAGAAGACCCCAGCCTTGGAGAAT-----TGGCCTCACTGAAGGGGCCTGCACCGGCCAG--CAGGGTCAGGCGGGGCCAGACAGGTTCCCACCTGGGATA---TGCAA---ATGGGCCTCCTGAATCCTGGAGCCAGGTATGGACTCACACACCACCATTGT-------CCCCAAGTCCCCATCTGCCCCACGGGCACACCCTGCCAC-CTGTTCTGTGCAAGGGCCCTGAGGCTGT s panTro1.chr23 23018168 409 + 50034486 ----ATCAGTCACTCAGCTCACGAGACCCAGGCCCTGACTCAGGGAGAGAGGATGTGAGGGGTGGGGCACCGGGCTCCCCAGGACTGAGAGACCCAAGATGTGGCCCCGGGCTGGGTGTTGGGGC---AGACTGGCTAT-GGCAGCATTGTGTGTACCCCAGCAGGCCAGTACCCACGGAGGGAGCCTCCAAACCCCTTCACCCATGACCCT--GGGAGAAGACCCCAGCCTTGGAGAAT-----TGGCCTCACTGAAGGGGCCTGCACCGGCCAG--CAGGGT--------------CAGGTTCCCACCTGGGATG---TGCAA---ATGGGCCTCCTGAATCCTGGAGCCAGGCGTGGACTCACACACCACCATTGT-------CCCCAAGTCCCCATCTGCCCCACGGGTACACCCTGCTAC-CTGTTCTGTGCAAGGGCCCTGAGGCTGC s mm5.chr10 55172815 343 - 130633972 ----ATCAGTCACTCCACTCACCAAGGCCAGACCCTGCCACAGAGAGGGAGGTCCTGACAGCT---GTAACGTGCTTTCTTATACTG---GCCCTGGGACCT---CCCTCTCTCTGTGGCAGGGC---AGAC-------------CAATGTATGGAACCCTGAAGCCCGTTGCCCA-------GGTTTCT--------------------------GAAAAAGGTCCAGTCTT---------------------------GGTCAGAACCAGCAGGCACAAAGTCA------------CAGG-TCTCATCCAGTCTGCCTTTCCA---ACCAGCACTGTATAGCCGATCTTCAATAATAGACT--CACACCATCTTTGCAATGCTGTCCAGAGTCCCCATCTTCCCTATGGACACAC----ATACACCATTCTGTGCAAGGGCCCTGGGACTGT s canFam1.chr26 10648950 394 - 41009621 GAATGTCAGTCACTGGT----CGGGCCCCAGGCA--ACCTCAGAAGGGGAGGCAGTGGGGGACATGGTGCTAAGC------------AAGGGC---AGGTTT---CCCTGGTCCTGGGCCAGGGTGAGAGACTGGCTCTGGGCAGCACTGAGTGCACCCTGGCAGGCCAGGACTCG-------------------------TCCATGCTTCTGGGGAAAAAAAACCCAGCCTTGGAGAACGGTCGTGGCTTCTCCGAAG-GGCCAGCACCTATCAT--CAGGGCCAGCCTGGCCCAGACCAG-TCACACCGTGGCCA---TGCCCTCTCCGGGCCTCCAGAGCCCTGGAGCTAGAGATAGACTCATGCACCACCTCTGCAATAT--CCCCTGACCCCCTTGTGCCCCATACACACAG-CTGCCTC-CTGCTCTGTGCCAGGGTCCTGGGCCTGC a score=6537.0 s hg17.chr13_random 77014 87 + 186858 CT-CCTTGCGCTCAAGCCCTGCAGGTGCTGAAGCCCACACACACA--GCTCCTGCTTCCTGGGCCAGTGCA----CGTGca----cacacacacacac s panTro1.chr23 23018577 97 + 50034486 CTCCCTTGCGCCC-AGCCCTGCACGTGCTGAAGCCCACACACACACGGCTCCTGCTTCCTGGGGCAGTGCATGTGCGTGCATGTGCACACACACACAC s canFam1.chr26 10649344 60 - 41009621 ---------------TTCCT-----TGCTGGAATCCAAACCCACATGGCCCCCACTACGAG--------------TGTGCA----CGCACACACACAC a score=-90.0 s hg17.chr13_random 77101 35 + 186858 gcgcac-----acacaccccca-cacata-cacatacccaca s canFam1.chr26 10649404 42 - 41009621 ATGCACCTTCTCCACACTCTCATCACAGGTCACAAAGTCTCC a score=864.0 s hg17.chr13_random 77572 30 + 186858 cacatgctcac-acacacacGCCTTCTCCAG s mm5.chr10 55173227 31 - 130633972 CACACCCCCACCACAGTTACACAGTCTCCAG a score=100.0 s hg17.chr13_random 77601 1 + 186858 G s canFam1.chr26 10649446 1 - 41009621 G a score=206867.0 s hg17.chr13_random 77602 1070 + 186858 GAGGGGCTGGCTGCCAAGGGCCACCCAGCTTCCTCCCACGTCTCACTCACCGTACAACATTTGAGCAGACCTTGGAGTCAGCAGCAACAGCAGCGGGGACAAAGGCCTGGGGGCCACATGGGGCCTGGTGTCGAGAGAGGAACACAGCCAGCACAATCACAGccagcgccagccccagccccagccccagccccagcAGGACCAGGTCAACCATGGCTCCGCAGTCCTGGGCCATGGCTCTGTGG-CCCAGAAGGAGAGGGG-----------------AGGCCGGTGggcagacggag--ggacagatggttgggcaga-tgaatagacaagaagatgcatagatagactcacaggtaattggacaga-tggacaaacaggtgggggctgaagacagacacgaagatggatcgacagacaggccagatagctagaaaaagtggacagtaagagaaagatggtcagatagacaATGGGACAGAGATGGGCTTACAGTTGGGCGGACAGACAG---ACAGGTCTGAACAGCGGGCTGCCAGATGGACAGATGGGTGAATGGACAGATGGCTGGCA-GCTGTGGTGA-GCTGCTGC------CCTCACCAAGTGCACACTA-------CGGAGTGGCCAAACTCATGCCTCAACTTCTAGTTTTCAGCTCCT---G--CTTGTTCCTGGCAGGAGGCCAGGCAGCAAAGCGTCTGAGGGGAGTTTTCTTTGCCT--AGAGAAGTCAGCTGCTG-TGTTAACTCCCTCACTGCTGGTAGGTCCAAAGGCC--CCACCTAC-TGCCT--GCCAGAGCCCATGGTCACACTGTCGCAATGTGCAGGAGAACTTGGTGCCTGCTGCACTGCTGTTGCCAGGTA----GGGGCAGGGCTCCCC-GGAACCTC-CACACCATTCCCCAGGTTCTCAGCTGCTCTGGGAAAGCAGAGTTGGGGCCGCTTAA--CTCTGCCCTGGATCT----GGCAAGGCTGCCCCCCTCCCAGAGTGGAGCCCTGCTCCCCAGCTCCCATCTCTATCCCCTAACCCTCTCCGCATGGC-CCAGCCTA-----GTCAGCATCAA-------------------------------------------GGTGGAGCTGAACAGAGGCAGAAGGAGGA--GGACCCAAGGTGGTGTCACTCAGGACC s panTro1.chr23 23018857 1055 + 50034486 GAGGGGCTGGCTGCAAAGGGCCACCCAGCTTCTTCCCACATCTCACTCACCGTCCAATATCCGAGCAGACCTTGGAGTCGGCGGCAACAGCAGCATGGGCAAACGCCTGGGGGCCACAGGAGGCTTGGTGTTGAGAGAGGACCACAGCCAGCACAATGACAGCCAGCGCCAGCCCCAGACCCAGC------------AGGACTAGGCCGACCGTGGCCCCGTAGCCCCGGGCCATGGCTCTGCAG-CCCAGA-GGAGAGCGG-----------------CGGCTGGTgggcagacggag--ggacggatgggtgggcaga-tgaatggacaagaagatgcacagag----tcacaggtaattggacaga-tggacaaacaggtggGGGCTGAagacagacacgaagatggatcaacagataggccagatagctagacaaagaggacagtaagagaaagatggtcagatagacaatgggacagagatgggcttacagatgggcggacagacag---acagctctgaacagcgggctgccagatggacagatgggtgaatggacagacggCTGGCA-GCTGTGGCGA-GCTGCTGC------CCTCACCAAGTGCACACTA-------CGGAGTGGCCAAACTCACGCCTCAACTTCTAGTTTTCAGCTCCT---G--CTTGTTGCTGGCAGGAGGCCAGGCAGCAAAGCGTCTGAGGGGAGTTTTCCTTGCCT--AGAGGAGTCAGCTGCTG-TGTTAACTCCCTCACTGCTGGTAGGTCCAAAGGCC--CCACCTAC-CGCCC--GCCAGAGCCCAGGGTCACACTGTTGCAATGTGCAGGAGAACTTGGTGCCTGCTGCACTGCGGTTGCCAGATA----GGGGCAGGGCTCCCT-GGAACCTC-CACACCATTCCCCGGGTTCCCAGCAGCTCTGGGAAAGCAGAGCTGGGGCCGCTCAACTCTCTCCCCTGGATCC----GGCAAGGCTGCCCCCCTCCCAGAGTGGAGCCCTGCTCCCCAGCTCCCATCTCTATCCCCTAACCCTCTCTGCATGGC-CCAGCCTA-----GTCAGCATCAA-------------------------------------------GGTGGAGCTAAACAGAGACAGAGGGAGGG--GGACACAAGGTGGTGTCACTTAAAACT s mm5.chr10 55173262 973 - 130633972 AACCCGCTAGCTGCCAAGGGCCACTGAGCTCACACCCACTTTTTACTCACCGTCCAATATCCGAGCAGATCTTGGAGTCAGCCGCTACCGCAGCACGCGTGAAGGCACCGGGACCACAAGAGGCTTGACGAGGAGAAAGGACCGCAGCCAACACAACGATAACCAGACCTAGACCTA----CACC--------CAGCAGGACCAGGCAGACCGTGGCCCTGTGACCCCAAGCCATGGCTCAGTGG-CCCAGGGACAGAGAGGGAGGCAACTGGACACACAGGGCAGTGGACAGACAGAGACAGACAAACTGACTGACAAACTGAAGGGAAAAGAAGCTACACAGGGTGA-TCTCAGGCTATTGGACAGAGGGGAAAGATCGATGGG---TCAAGACAGACA------------GCCACACAGGCCAGACAACTGGACAGAAAGGAT-------------------GACGGACA--------------GCCTTACAGATAGGTGGCCAGGCAGGTTACAGA--GGAGAAACAGGAAGCCAGCCAGCC---TGGGTTTATGGATAGACAGACGGCAGGCTGTGGCCAGGCTGCTGCTACACTCTCCTCCAGAGGCA-------------GAACTAGCCA----CAGGTCTGAACTTGCAGTTTTCAGCTCCCGAGG--CTCAACCCTGGAGGCAAGCCAGGCA--------TCTACAGGGAGTTTTTTTTTTCTTGAGAAGAGCCAGCTGCCGCTGTTAACTCTTCCATCGCCAGTTGATCCCATGGCC--TGCCCTGC-TGCCCCAACACCACCCAAAGACTCCTCAGTCCCAGTGCCATTGGAAATGTGATGCTTGATGCAC--------CCAGGGGAACTGGGACATGGAACTCAGGGAACCTCTCTCACTGTTTTCCTGCCTCCCAACAGCT---------CAGGGTCAGGG-----------TGTCTCCTG----------------------------CAGGGTGAAACTCCATTCCCCAGCTTCCA-------CTCCCAACTGGTTCCACCCAG--GCAGCCTCTCAATGCAATCACCCA-------------------------------------------GCTGGTACAGAGATGGGGCTGAAGGTAGA------CCAAGGTA--GCCACTCAGGACC s canFam1.chr26 10649447 1030 - 41009621 GCAGGGCTGGCCACCCAGAGCCACCCAGCAACCACCCACCTCTTACTCACCGCCCAATGTCCGAGCAGACCTTGGAGTCAGCGGCAACCGCAGCATGGGCAAAGGCCTGGGGCCCACAGCGGGCATGGCGGCGAGAGAGGACCACAGCGGACACAATGATGGCCAGGGCCAGCCCCAACCCCAGC------------AGGACCATGCTGACCGTGGCCTTGTGGCCTTGGGCCATGACTCTGAGGCCCCAGGTGGAGACAGA-------------------------GGGCagatggac--acacagatgggtgga-----tgaatccacaagaagatgggcagatggatgcacaggtgattggacaga-tgaacaaagaggtgggggccagagatagaca--------aacggattgatagtctagacagctggatata--ggatagtaagagaaggatggtcagagagacagttggacagaGACAGGATTACAGACAGGTGGACAGACAG------GTTTACAAAGAGAGGCACCCTGGAGGACAGGTGGGTGTATGGACGGACAGCTGGCA-GCAGCGGG---GCTGCTGC------CCTACTCAAGCGCTCGCTAGAGAGGCAGAGCTGGCCA----CACGCCTGAACTTCCAGTTTCTAGCCCCT---GTTCTTGGCCCTGGCAGGAGGCCAGGGAGCAGGGCGTTTATGGGGAGTTTTCTTTCCAG--AGAGGAGCAAGCCACTGCTGTTAACTCCCTCAT----------TCCCACAGCCTGCCCCCTACAAGCCTTGAGGGTAGCCCAGGGCTCTCCCAACCCA-TGTGCTTGAGGACTTGGCATCTCCTGTCC--------CCAAGG-----GAGCCAGGGTGCAGG-GGTA-----CAGGCTGCTCTCCAG-TCCCCAG--------------CAAAGCCGGGACAGCAGGG-------CTCAGGCTCAGAGGGGCAAGGAG---------CCACAGTGGTGCCCCGACTCCCACCTCCTTGGTGTG-----------GTTCCACTCAGCAACAGCTTG----CTTTGGCATCCAGAGAGCTGGAGGATACTGAGGATTTCTGGGGCAAAAGGGTGAGGCTGGAGGGGGGCAGAGTCAGAGGGTAGAGTGGACCCAAGGCAATGGCACTCAGGGCC a score=3790.0 s hg17.chr13_random 78672 22 + 186858 CGGGTTCAAGTCCTTATGCTTC s panTro1.chr23 23019912 22 + 50034486 TGGGTTCAAGTCCTTATGCTTC s canFam1.chr26 10650477 22 - 41009621 TGGGTTCAAGTCCCCGTTTGGC a score=35524.0 s hg17.chr13_random 78694 337 + 186858 TGCAGCCTGGC-CTGGGTCCCCCAAACCCCCAAGGTTAACAAG---------GGCTTCCCAGTCTGCACAGAGGACAGGGGGACTTGACAGCATCAAATGCTGGTGACTATGAGACACTTATGTGGGAAATGCAGACAGACCATGCCTCTAGC-CCTTGGTACCCGGC---------ACCATCCATCC------CTGGGACTTGCTGTCCTGGAAATGCAGCA-TGGACCTCCAGGGAGGGGGGCTGTGCCA-TGTGGGGGCCCCACCCCACCTGCAGCTCTTTCCCACCCTGGCTGCAGGTCTGCTTCCCTGAATCCA----AATCC---GCTACTACTGTGCTGGCAGCACAGCCTCT-CTGGGGACACTG s panTro1.chr23 23019934 330 + 50034486 TGCAGCCTGGC-CTGGGTCCCACAACTCCCCAGGGTGGCCAAG---------GGCTTCCCAGTCTGCACAGAGGACAGGGGGACTTGACAGCATCAAATGCTGGTGACTACAAGACGCCCATGTGGGGAATGCAGACAGACCATGCCTCTAGC-CTTTGGCATCCGGG---------ACCATTTGTCC--------AGGACTTGCTGTCCTGGAAATGCAGCA-TGGACCTCCAGGGAGGCAGGCTG------TGTGGAGGCCACGCCCTGCCTGCAGCTCTTTCCCACCCTAGCTGCGGGTCTGCTTCCCTGAATCCA----AATCC---GCTATTACTGTGCCGGCAGCGCAGCCTCT-CTAGGGACACTG s mm5.chr10 55174502 270 - 130633972 TACAGCCTGGCACAGCCTCATCCAAAC----------------------------------ATCTGAGCATGGGGTGGGAAG------------------------------------------GGAGTGGGCAGGCAGGCCAGATGTCCAGTGCCCTGACACCCAGT---------GCTGCTGACACACAGTGCTGGGACATAGTGACCCATAAACTCAACCTTAGACCTCTAAAGGACGAGGCTGCCCTGCTCAAGTGCCCTCCCTTTTTCTGCAGCTC---------------AGAGGCCCACTT-GCTGAGTCCAGAAGAACTCAGGGCTATTTCTGTGCTGGTGAGCCTCCTCCT-CTGGGAGC-CTG s canFam1.chr26 10650499 295 - 41009621 CGTAGCCTA---CTAGG------AAAC---AAGGGTGACCAGGAGGGGGCTCAGCTCTCCAATCTG-------------------------CATCAGACACGCAGGACTACAAGACAGCTGTGTGAGGAAAGCAAACGGGGCCTGCCTCCAGC-CCTTGGCACCCAGTGCCCACCAGACCATCCACCC------CTGGGTCTTGCTGTCCCAGAAACACCACCATGGGCCTCCTGAGAATGAGGCTG----------------CCCTCCCATCTGCATCTCTGTGCTTCCCTGGCTGGGTGTCTGCTCCTCTGTGCTCC------------------TCTGTGCTGGCTGTGCCTCCCCTCCTGGGGACACTA a score=9599.0 s hg17.chr13_random 79031 37 + 186858 GCCTGGCTCTG-TTCTCCCCA-GGCCTCAGGGTGCCTAA s panTro1.chr23 23020264 36 + 50034486 GCCTGGCTCTG-TTCTCCCTA-GGCCTCAGGG-GCCTAA s mm5.chr10 55174772 38 - 130633972 GCTTGGGTCCT-ATCTTTCCATGATCTCAGGATGTTCCA s rn3.chr7 27126923 37 - 143082968 GCCCCTCCCTA-TTTTCTTCA-GTCCCCAGGGTGCTGAG s canFam1.chr26 10650794 38 - 41009621 GCTTAGACCTTCCCCTGCCCA-GACCTCAGGGTATTCAA a score=14192.0 s hg17.chr13_random 79068 46 + 186858 ATGGGAGGCAGCCAGGGGAGTGAGGACCCACTGAGGGGCTCCGTTG s panTro1.chr23 28616927 46 - 50034486 ATGGGAGGCAGCCAGGAGAGTGAGGACCCACTGAGGGGCTCTGTTG s mm5.chr10 55174810 46 - 130633972 GTGGGAGGCAGCTGGAGCAGTGAGGACCCACCAATGTGCTCTCGTG s rn3.chr7 27126960 42 - 143082968 TTTGGAGATACCCAGGGAAATGAGGACTC----AGGGTCTACATTG s canFam1.chr26 10650832 34 - 41009621 CAGGGAGACAGCTGGAGGAG-GGGGACCC-----------TTCTCG a score=54334.0 s hg17.chr13_random 79114 352 + 186858 ACCCGGCTCAGCAGGGGTGCAGGTGATGTGGGGTGGAATCCTTCCCACATGGCCCCCACAGTCCTCCCC---------GCTTCCTCCCCAGCTGAACA--CTGCCTGCTCCAGA--TGTCTACACCTGGAGTCCGGGCCCCTCCATCTGG-GCAGC--------------------AGAGAAACTGAGGCACAGAGACAGACTGTGTCCTTACAGGCCACACAGCCTGCCAGGCCCCTATGTC-TGGCCAGAGCCCCTGGTCAGCCTGGGCTGCAGTGATTGTTTAGAGGTAGGCTGTTCCCACGGCTGCCTCTCACGGTATGGGG--GCCTGTGGACGCCTCCTCC--------TGCCCCCACCCGACTCCCAAGCCTCAGTGACATTGCTCAACC s panTro1.chr23 28616973 352 - 50034486 ACCAGGCTCAGCAGGGGTGCAGGTGATGTGGGCTGGACTTCTTCCCACGTGGCCCCCATAGTCCTCCCT---------GCTTCCTCCCCAGCTGAACA--CTGCCTGCTCCAGA--TGTCTACACCTGGAGTCTGGGCCCCTCCATCTGG-GCAGC--------------------AGAGAAACTGAGGCACAGAGACAGACTGTGTCCTTACAGGCCACACAGCCTGCCAGGCCCCTATGTC-TGGCCAGAGCCCCTGGTCAGCCTGGGCTGCAGTGATTGTTTAGAGGTAGGCTGTTCCCACGGCTGCCTCTCACGGTAGGGGG--GCCTGCAGATGCCTCCTCC--------CGTCCCCACCCGACTCCCAAGCCTCAGTGACATTGCTCAACC s mm5.chr10 55174856 350 - 130633972 ATCAGAATTAATACATGTGCAGGGCAGAAGAGCT---CTTGGTTTCA---GGCCTTCCCATCATTCCTC---------ACTCTCTTTCCA-CTGAGCATGCCCCCCGCCCC-----------CATCT------TCGTACCCCCCGGCTTG-GCAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGCCCAGAGAGGGA--ATGCCCGCACTGGCCACCCATCCTGTTAAG------TGTCACACCCAGAGTCCCTGCTAAGCCTGGACAAGGGAGGCTGTTTCCTGTAAGCCTGTTCCCACATCTTCCTAGAGGAAGAGGGGAGTGTCTGTGGGAGTCTTCCCCATCCCAGTTGTCCCCAAC--ACTACAATGTC---ATGTCATTGCTCAACC s canFam1.chr26 10650866 299 - 41009621 ACCAGGTTTAGCAGGAGT----------CAGGCTGGACTCCCACCTCCACAGCACCCACAGCCCCCCTATGCTCTCTGGCTTCCTTTCCAGCTGAGCG--CTGCCAGCCCCAGGCCTCTCTACGCCT------------------CCTGGTACAGT--------------------AAAGAAAC--------------------TGCCCACGCA-GCCACACAGCCCGCCAGGCCC--------CATCCTGAGCCCCTGGTCAGCCTGGGCAGGC-------TCTCCACTAGGCCTGTCCCCGTAGCTGCCACGTGGGGT-GGGAA--GCCTATGGGCGCCTTCTTC--------TGTTCCCACT-GTCCCCCCTGCCACAGTGACATTGCTCAACC a score=7468.0 s hg17.chr13_random 79466 232 + 186858 AGGAGCTGAAGTGCATTCCTCGGCTCAGGCCAGCCCACCCATCGACCCGCTGCAGTCCTGGAAGCCCAGAGGCCTGGGCAGCAGGAACAG-TGGAGACAGCAGTGTGGGGGACGTCCCCCCTCCTCTCCCCA------CCATCCTCATCAGGCAGAGGCCAGGGTGCAGGGACCATCCGAGCAAAGGCCCAGGGAAACGAATGGGTGTCATTCTGGTCCTGACCCG----------------AGGCACAGCCAGG s mm5.chr10 55175206 221 - 130633972 AGGAACCAAAGCACATTCTTGAATGTAGGCCAGTCCACTCACGGGCC----ACTGTCCCCTAAGGCCAAAG--CAGTATGGGGGGAACAA--GCAGACACAAGGGTAGGTTATCTTCCCCTCCTGGTCCCTGGCTGGGACATCCTGGTCAGGCGCAGACCAGAGTTCAGAGGCAGTTCTA-CGGATTCTCAAGGC------TTGCTATCATACTGGACTTGGCT-------------------GGGAAGGCCAGG s canFam1.chr26 10651165 223 - 41009621 CAGAAACAAAGTGCATTCCTGGGCCAGGGCCAGCCCATCCGCTGG------GAAGGC----AGGGACAGAG------ACAGTGGGTCTGAGTGGGGGCTG------AGGGGACACCCCCCCC----TCCCCA-----GCCATTCTGGTCAGGCTGAGGCCAGGGTGCAGGGAACAGAGGAGCGAAGTCCCAGGAA-AGGCAAGAGCATCATGCCAGGCCTACCTGGCTAGGTGTGGCTGGACAGGCTTAGCAAGG a score=528.0 s hg17.chr13_random 79698 9 + 186858 AAGGTCCCt s canFam1.chr26 10651388 9 - 41009621 AAAGGCCCT a score=68571.0 s hg17.chr13_random 79886 788 + 186858 atggatttagggctatgcaggatgtgctttgttaaacaaatgcttgaaggcagcatgcttgttaagagtcatcaccactccctaatctcaagtaagcagggacacaaaacactgcagaaggccacagggacctctgcctaggaaagccaggtattgtccaaggtttctccccaagtgacagtctgaaatatggcctcctgggaagggaaagacctgaccatcccacagcccgacaccc-caaagggtctttgctgaggaggattaataaaagaggaagg----cctctttgcagttgagataagaggaaggcatctctctcctgatcgtccctgggcaaaggaatgtctcggtgtaaaacccgattgtatattccatctactgagataggagaaaactgccttagggctggaggtgagacatgctggcggcaatactgctctttaatgcattgagatgtttatgtatatgcacatcaaagcacagcacctttttcttaaccttgtttatgacacaga--catttgttcacgtgttttcctgctgaccctctccccactattaccctattgtcctgccacatccccctctctgagatggtagagataatgatcaataaatactagggaactcagagactggtgccagcgtgggtcctccatatgctgagtgcaggtcccctgggcccacttttctttctctatactttgtctctgtgtctctttcttttctcagtctcttgtcccacctgatgagaaacacccacaggtgtggaggggcaggccaccccttcaGGT s panTro1.chr23 26613979 794 - 50034486 atggatttagggctatgcaggatgtgctttgttaa-catatgctttaaggcaacatgcttgttaaaagtcatcaccactccctaatctcaagtaagcagggacacaaaacactgcagaaggccgcagggacctctgcctaggaaagccaggtattgtccaaggtttctccccatgtgacagtctgaaatatggcctcgtgggaagagaaagacctgaccgtcccccagcccgacacccgtaaagggtctgtgctgaggaggattagtataagaggaaggaaggcctctttgcagttgagacaagaggaaggcatctgtctcctgatcgtccctgggcaaaggaatgtctcggtgtaaaacccaattgtatattccatctactgagataggagaaaactgccttagggctggaggtgggacatgctggtggcaatactgctctttaatgcattgagatgtttatgtatatgcacatcaaagcacagcacctttttcttaaccttgtttatgacacagagacatttgttcacgtgttttcctgctgaccctcgccccactattaccatgttgtcctgccacatccccctctctgagatggtagagataatgatcaataaatactagggaactcagagactggtgccagcgtggggcctctgtatgctgagcgcaggtcccctgggcccacttttctttctctatactttgtctctgtgtctctttcttttctcagtctcttgtcccacctgatgagaaacacccacagatgtggaggggcaggccgctcctTCAGGT a score=705.0 s hg17.chr13_random 80674 5 + 186858 CCCTG s panTro1.chr23 26614773 5 - 50034486 CCCTG s mm5.chr10 55175435 5 - 130633972 CTCCA a score=31227.0 s hg17.chr13_random 80679 155 + 186858 AATGTCCTTCCTCAGGAAATGATGGGGGAAGGGGTGATGAGAATGAAGGAGAGG-ATTTAAGTCCCTCACCCCCCGAGGTAGTCCTGGGCTGAGCCCCATGGGACCTGGAGAACCAGGGTGTACCCCACCAGCGTGTTGGGTCCA-GGAAGTCTCAT s panTro1.chr23 26614778 155 - 50034486 AATGTCCTTCCTCAGGAAATGATGGGGGAAGGGGCGATGAGAATGAAGGAGAGG-ATTTAAGTCCCTCACCCCCCGAGGTAGTCCTGGGCTGAGCCCCATGGGACCTGGAGAACCAGGGTGTACCCCACCAGTGTGTCGAGTCGA-GGAAGCCTCGT s mm5.chr10 55175440 149 - 130633972 AAGGCCCTTATCCAGGAAGTAACATGGAAAGG---CACTAGAAAGGGGATGGTC-ACTCAAGTCCCCAAGTCTCCAAAGAAGCTCTGGGCTATACGCAGTGGGTCTGGGAGAGC---GCGGTACACTTCAAGCACCCTGGGTCCATGGAAATCTC-C s canFam1.chr26 10651398 154 - 41009621 AATATCCTTGCCCAGGAGGTGA-GGGGCAGGAGATGATGGGAAGGAAAGAGAGGAAACCAAGTCCCCCAGCACCCAATGGAGCCCTCAGCTGAGCCCCAGGGGGCCTGGGGAAC-TGGGTGCACTCTGCCCACAAGCAGGAACCC-ACAAGCTTTAC a score=0.0 s hg17.chr13_random 80834 6 + 186858 GGCCAG a score=1773.0 s hg17.chr13_random 80834 6 + 186858 GGCCAG s panTro1.chr23 26614933 6 - 50034486 GGCCAG s mm5.chr10 55175589 6 - 130633972 GGCCAG a score=23791.0 s hg17.chr13_random 80840 206 + 186858 CTCCCACTTCTCTTGCTGCTGTGCAACCCAGAGCAAGGCCTGCCCCTCCAGCTTTAGTCTTCTCCCCTGCAAATGGGGCCACGGCTTTTCCTCTCAGGCCAAAATAAGGATTGAGgccgggtgcagtggctcacccctgtaatcctagcactttgggagactgagattgggggactgcttgaagtcaggagttaagaccagcctgg s panTro1.chr23 26614939 206 - 50034486 CTCCCACTTCTCTTGCTGCTGTGCAACCCAGAGCAAGGCCTGCCCCTCCAGCTTCAGTCTTCTCCCCTGCAAATGGGGCCACGGCCTTTCCTCTCAGGCCAAAATAAGGATTGAGgccgggtgcagtggctcacccctgtaatcctagcactttgggagactgacatggggggactgcttgaagtcaggagttaagaccagcctga s canFam1.chr26 10651552 112 - 41009621 CTCC---------------------ACCCGGAGCAAGACTAACCCCTCAGGCCT--GTCTTCTCTCCTGCAAA------CATGGCCTTTCCTCTAGGGCCAAAATGAAGGCTGAGG------AGATTGACACACCCC-----------------------------------------------------------ACCAGCCCAG a score=5147.0 s hg17.chr13_random 81046 61 + 186858 tcaacatagtgagaccccatctctattGGtttaaatttttttaaaaaaaattaaataaata s panTro1.chr23 26615145 60 - 50034486 tcaacatagtgagaccccatctctattGGtttaaatttttttaaaaaaa-ttaaataaata a score=6807.0 s hg17.chr13_random 81107 41 + 186858 aaataaGGATTGAAGAGTGACTTGTA--CACCAGTTGAGCCTA s panTro1.chr23 26615205 41 - 50034486 aaataaGGATTGAGGAGTGACTTGTA--CACCATTTGAGCCCA s mm5.chr10 55175668 43 - 130633972 AAATATGGATTGAGGAATGGCTGGCACCCCCCCCTTCAGCCCA a score=42925.0 s hg17.chr13_random 81148 213 + 186858 CCTCCACCTCACCCTTGCAGAGCCCCAGAGACACAGCCCTCCAGAGCTCAGACCCAGTGGGACTTGACTCCACAGGCATAAAACCCTGTTTGTCTATGGGCCCTTTGGAATCACCAGGTTTTTGGGGCTCCTGAAGGATAGCCCCGA-------CCTGGCCTCACCTGGCCCCTGGCCCCAGTGCCCCT---------------------GGTGATATCCAGGTGCTGGGCTGTGATCACC s panTro1.chr23 26615246 213 - 50034486 CCTCCATCTCACCCTTGCAGAGCCCCAGAGACACAGCCCTCCAGAGCTCAGACCCAGTGGGACTTGACTCCACAGGCAGAAAACCCTGTTTGTCTATGGGCCCTTTGGAATCACCAGGTTTTCGGGGCTCCTGAAGGATAGCCCCGA-------CCTGGCCTCACCTGGCCCCTGGCCCCAGTGCCCCT---------------------GGTGATATCCAGGTGCTGGGCTGTGATCACC s mm5.chr10 55175711 218 - 130633972 GCTTC-TGTGTTCCCCAAGGAGCCCCAGAGATAGAGAGCTTTAGAGCTCAGAC---ATGGAGCACACCT--ACAGG---AAAACCCTGCTTTCCCATGGGCAGGTTGGAAACACCAGGACTTCTAGCCTCCTGG-----GACCCTCC-------TCCAGC--CACTGGGTCCCTTCCCTCAGGGACCCCCAACTTGTGCTCACTTTAAGGGGCAATATTTAGCTCCTAGGCTGTGACTACC s canFam1.chr26 10651664 228 - 41009621 CCTCCATCCTGTCCCCG-GGGGACCCAGAGGTACCGCCCTCCAGGGCACA--------GGGCCCAGACACTGCAGACACAGAACCCTGCTTCCTTGTGGGCCCTTTAGAATCGCCAAGTTTTCCTGTCTCATGAAGGAGAGCCCAGACTCCTCCCCTGGC--TCCTGTGCCCCTGTCCCCAGGGGTCCC-CGCTGATGCTCCCTGGTCAGGGGGCTATCTGGCCATCAGGCTGTGATCCC- a score=15061.0 s hg17.chr13_random 81361 114 + 186858 GCCTCCCACCAGCCCACCTCCACCAGCCCTTCCCAGAAC-CCTGCTCCAGGTGTTGGAACTGTGCACAGAGGAGGGAGCAGGCCCCAAGGGAGGCCTGGAGGGGCT-GCCAATGGT s panTro1.chr23 26615459 114 - 50034486 GCCTCCCACCAGCCCACCTCCACCAGCCCTTCCCAGAAC-CCTGCCCCAGGTGTTGGAACTGTGCACAGAGGAGGGAGCAGGCCCCGAGGGAGGCCTGGAGGGGCT-GCCGATGGT s canFam1.chr26 10651892 100 - 41009621 --TCCTCCCCTGCCCACACCCGCCAGCCGTT--CAGAGCTCCTCAGCCAGACATT------------ACAGGAGTTTGCAGACTCTGGGGGAGGGCGGGAGGGGCCGGCTCATGGG a score=143209.0 s hg17.chr13_random 81475 791 + 186858 GAAGGCTGCTGTGTCTAGCTGTTTCCTTCTGGACCCACTCCCTCTGGGCTGCG-TCCCCAGCTGGT-------CCAAGCCCTGATCCCTGGGATCT---------GGGGACAT-------CTTCCCGTTTGCTGTTCCCTGAGAACCAGGCCTCCCTCTGGAGAGGATCACAAGCTTGGGTTTCACTCTGGGCTTGCTCTTGGGAA---------CCCCCGAGGGGCGTGGCTCTGACCGAGATGTTTTCCTCCAGCCTGTTGCCCAGTCCCCATTCCTCGGACCTCAGCTTCACCGCC-AGTGTCATCGGCAGGGTGAGCTG--GAGGCCTACG--GGTCTGAGAAGGCGCCCAGGTTCCCAGCATCAGCTGGCCACCCTCTGCCTAAGAAAGCGCCAGGGTCGTGACACCCCCTGGTGGCTGATCCTAGGTAGTGTCACTGCCCAGCCCCAGTAAGGGAGGGCCTGGCCCCAAAGTCCGAGGGATCAGGGTG-GGAAGGGGCAGGGTTTGGTGTGAACC-TTCCCCTGGCCCCCAGCCATGTGCCCGGCTCTCCCCATGCTGAAGATGCTGAGGCTAGTTCCAGTGCCC-GCATTGTGA-AGATCTCCGAATCCCACCTCTCTGTTCCTCCCCAGCCAGATGGCTCCATTTCACACACAATACACTGAGGCCCAGAGAGTGGGGAG-ACAGGCCAGGGAGGCCACCTGGAGCCTGGCACAGTGGCCT-CATTTATTATGCT-GCTCTGCTGCTCACAGGGGAAGCCCGTCCCCCAAAGTCCTCTTCCTCGTCCTCGTGAGTATCTTGTCCCTGGATTGCTTGTCAGCCTTGTCT s panTro1.chr23 26615573 791 - 50034486 GAAGGCTGCTGTGTCGAGCTGTTTCCTTCCGGACCCACTCCCTCTGGGCTGCG-TCCCCGGCTGGT-------CCAAGCCCTGATCCCTGGGATCT---------GGGGACAT-------CTTCCCGTTTGCTGTTCCCTGAGAACCAGGCCTCCCTCTGGAGAGGATCACAAGCTTGGGTTTCACTCTGGGCTTAAACTTGGAAA---------CCCCCCAGGGGCGTGGCTCTGACCGAGATGTTTTCCTCCAGCCTGTTGCCCAGTCCCCATTCCTCGGACCTCAGCTTCACCTCC-AGTGTCATCGGCAGGGTGAGCTG--GACGCCTACG--GGTCTGAGAAGGCGCCCGGGTTCCCAGCATCAGCTGGCCACCCTCTGCCTAAGAAAGTGCCAGGGTCGTGGCACCCCCCGGTGGCTGATCCTAGGTAGTGTCACTGCCCAGCCCCAGTAAGGGAGGGCCTGGCCCCAAAGTCCGAGGGATCAGGGTG-GGAAGGGGCAGAGCTTGGTGTGAACC-TTCCCCTGGCCCCCAGCCATGTGCCTGGCTCTCCCCATGCTGAAGATGTTGAGGCTAGTTCCAGTGCCC-ACATTGTGA-AGATCTCCGAATCCCACCTCTCTGTTCCTCCCCAGCCAGATGGCTCCATTTCACACAGAATACACTGAGGCCCAGAGAGTGGGGAG-ACAGGCCAGGGAGGCCACCTGGAGCCTGGCACAGTGGCCT-CATTTATTGTGCT-GCTCTGCTGCTCACAGGAGAAGCCCGTCCCCCAAAGTCCTCTTCCTGGTCCTGGTGAGTATTTTGTCCCTGGATTGCTTGTCAGCCTTGTCC s mm5.chr10 55176439 717 - 130633972 AAGGAGGGATGTATCTAATGGTGCTCTTCTGGGCTCATCCATTGTGAGCTGTG-TTCCC--CTTGT---------------GGATCTGTGGGTTTTCTATAGCTGGCGGACCTGCTGGGACTGTCTGTTTGTT------TGAGAACTGGGCCTCTTGCAAG--------ACAAGCTTGGCTTTCACTCTGGGTTTGTGCTTGGAAA---------GTGACCTCAAGTATGGCCTTAGCCAAATTGCCTTGTTTTTGTCTCTAGTCTACTCTC-----------CTTCAGTTTTACCCCC-TAAGT-----GCGGGCCAA--TG--AGAGCCCACATCTGTCCTAGAAGCATTCTCCACCCACAGCTACAG-TGTCATTGCTTTGTTCCAGTTAATGGCAAGGTCGGGGCGCCCTCTAGTGGCTGATATT-GCAAGTGTCACTGCTTAGGACAATTTAGGT-----------------------------------------------GTTCTGTTTACCCCATCCCCCTAACTCTCAGGCACG-GTGGGATTCCCCCCAC-TTAAAG--GTTGGTGTTAGCTTCATGACTTAACATCACGGTAAGTCTTAGGATCCTGCCTTGTCATT--TTCCAAGTGAGATGACTCCATTTCATACACAAGACACTAAAGTCCATGATATGGAAAGTTCAGCCCGCAAAGGCTTCCCGCAGCTTGG--CGGTGGCCTCCATTTATTGCGCTCCCTCTGTCCCACCCAGAGGCGGCATGTTCTCCAACGTCCCACTCTTGCTCCTGTTCCCATTCTCGTCCCTTGGCTGCGGGTCAATCTTGCCT s canFam1.chr26 10651992 786 - 41009621 GAAGGAGGCGGCCGCT-GCTGCTCCTCGCCAGGCCC-CTCTGGCTGGGCTGCGCTCTCCAGCCGCTCACCACTCCAAGCCCTGACCCTTGAGATCT---------GGGGACCT-------CTTCCAGTTCACTGTTCCCTGAGAACTGGGCCTCCTTCTGGAGCTGATCAC-AGCTTGGGTTTCATTCTGGGTTTGTGCTTGGAAACCCCCCCCCCCCCCCCCAGGGCTGGGTCCCAACAAAAAGTCTTGGTCCAGCCTCTTGCCCAATCCC-ACTCTTCAGACTGGAGGTCCACCTCCGTGTGTCCTCCAGAGTGTGAGCAGATGGCACCCCCGCCAGGCTGGAGGGGTAGCAGGGTTACAAGCATCAGCTGGCTGCTCTCTGCACAAGTGAACCCCAGGGCTGCGACACCGCCTGGTGGTCAACACTAGGAAGTGCCATTGGCC--CCACAAGAAATGGGACCTGGGGCCCCTGGTCCAGCGACTCAGGGTGAGGACCGTGCTGGGTATGGGCTGGCCC-TGTCCCCCACTCCC--CTACCCACCGCGTTCTC------ATGAAAAGTCTCAGGCTAGCTCCCTCACCT-AAGGTGTAA-AGACCTCTGAGTCCCACCTCTCCACC--GTCCCCACCGGACAGCTCCATTTCACACACAGGATCCTGAGGTCCAGGGATCTGGGAG-CCGGGCCAGCGAGGCTGCCCAGAGCCTCACGCTGCGACCCCCATTTATTGCACT-GCTATGTCACTCACAGAGGAAGCAAATCCCTCAAAGTTCCACTC-TGCCCCCAGCAGGCATCTCATCCCTAGGT------------TTGCCT a score=422.0 s hg17.chr13_random 82266 6 + 186858 GCCCGG s panTro1.chr23 26616364 6 - 50034486 GCCTGG s mm5.chr10 55177156 6 - 130633972 CTTCCG s canFam1.chr26 10652778 6 - 41009621 GCCCTG s fr1.chrUn 289107412 6 - 349519338 GCCGGC a score=85675.0 s hg17.chr13_random 82272 155 + 186858 AGCACTCAGTAGCCGGCAGGCTCCCCACCTTTCCTGGAGTCTGAGGCAGCTGCCCAGCCACCAGCCGTG-CGGACGATGGCTTGCACCACAG-CGATGAAGGTGGACGCGATCTGGGTGTGATGGTGCCGGGTCTCCAGGGCTGCAGTCACTGCCTG s panTro1.chr23 26616370 155 - 50034486 AGCAATCAGTAGCCAGCAGGTTCCCCGCCTTTCCTGGAGTCCGAGGCAGCTGCCCAGCCACCAGCCGTG-CGGACGATGGCTTGCACCACAG-CGATGAAGGTGGACGCGATCTGGGTGTGATGATGCCGGGTCTCCAGGGCTGCAGTCACTGCCTG s mm5.chr10 55177162 155 - 130633972 GGCACTCAGTAGCCAGCAGGTTCCCCGCCTTTTCTGGAGTCTGAGGCAGCTGCCCAACCACCTGATGCT-CGAACGACAGCCTGAACTACAG-CGATGAAGGTGGGCGTGACTTCTGTATGGTGGTGCCGAATCTTCAGGCCTGCAGTCACCACCTG s canFam1.chr26 10652784 155 - 41009621 AGCACTCAGTAGCCAGCAGGCTCCCCGCCTTTCCTGGAGTCTGAGGCAGCTGCCCAGCCACCAGCCGTG-TGGACAATGGCCTGCACCACAG-CGATGAAGTTGGACGTGAGCTCAGTGTTGTGGTGCCGCATCTTCAGGGCCTCAGTCACTGCCTG s fr1.chrUn 289107418 155 - 349519338 TGCTCTCAGTAACCCGCCGGGTAGCCTCCTTTCCTGGGGTCGGACTCGGC-GCACAGCTGCTCCCCCTGCCGGACCACCGCCTGGACCACAG-AGTCAGGAGACTTCAACTGCTGGGTCACGTGGTTCTTCTGCACCAGACCGTCCATGATGCTCTG s danRer1.chr15 9085122 152 + 23217395 AGCGTTCAGTATCCAGCAGCATGACCGTCATTTCTCGTGTCAGATTGAGC-ACAGACTTTCTTCCCTTTTCGTCCAATGGCCTGAACCACAGATAATGCAGTATCATGAA----GAATATGATGATTCTTCTGCTTCAAGCCTTCAATTACTGCCTG a score=1559.0 s hg17.chr13_random 82427 32 + 186858 GGG-----------------GTGGGGG-GAGAGGGGAAGG-CTGAGCAGGG s panTro1.chr23 26616525 32 - 50034486 GGG-----------------GTGGGAG-GAGAGGGGAAGC-CTGAGCAGGG s mm5.chr10 55177317 45 - 130633972 GGGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGA-GAGAG----- s canFam1.chr26 10652939 34 - 41009621 GGG----------------GGCGGGAG-GGGATACAGAGACCTCAGCAGGG s fr1.chrUn 289107573 29 - 349519338 AGG--------------------GGAG-GAAGAGGGAAGG-TGACGCTGGG a score=5197.0 s hg17.chr13_random 82459 38 + 186858 CTCCAGATGCCACCTGAACCACGCCTGTGTGGTCACAG s panTro1.chr23 26616557 38 - 50034486 CTCCAGATGCCACCTGAACCACATCTGTGTGGTCACAG s canFam1.chr26 10652973 26 - 41009621 CCCGGGATGCCACCCAAACC------------CCACAG a score=1778.0 s hg17.chr13_random 82497 229 + 186858 G-----CCTCAGCC---CAGGTG----------GTGCCATTTCAGGCCAGGTCATCAGGAAGAGCAGGTTG---------GGGCCTGCTGGGTCTCATTGGAGCAGGGGGTTTGGCCCTCATGGCACAGGGGCTCCAGATGGCCCA-GGCA----------------------CTAGAGAGAGGACACCAACCATTGTTCACTCTGTGAT---------GATCCAGGCCT--CCAGCCCAGGATGCCCTGG--GG---CCACACACCATG------ACTCAGTTTCTCCAACCCCTGGCCC------------- s panTro1.chr23 26616595 229 - 50034486 G-----CCTCAGCC---CAGGTG----------GTGCCATTTCGGGCCAGGTCATCAGGAAGAGCAGGTTG---------GGGCCTGCTGGGTCTCACTGGAGCAGGGGGCTTGGCCCTCATGTCACAGGGGCTCCAGATGGCCCA-GGCA----------------------CTAGAGAGAGGACACCAACCATTGTCCACTCTGTGAT---------GATCCAGGCCT--CCAGCCCAGGATGCCCTGG--GG---CCCCACACCGTG------ACTCAGTTTCTCCAACCCCCAGCCC------------- s mm5.chr10 55177362 126 - 130633972 --------------------------------------------------------AGAGAGAGAGAGAAA---------GGACAGGGCACGTCTCAGCAGGGCCACAGATTTG----TCGTAACTC----------------------------------------------------AGAAGATGCCAGCC-------------------------------------------TCTAGGATGCTCTCT--CA---TCCCACACCATG------ATTCTGTCTCCTCAGCTCCCAGCCT------------- s canFam1.chr26 10652999 269 - 41009621 ACCGACCCTGAACCATGCAGGTG----------GTGCCATTTCCAGCCCAGTGGCCAACAAGAACAAGTTGGGGGCCGCTGGGCCTAGTGGGTCTCACTGGAGCAGGTGGCCTTACTCATGTTGCACGGAGGCTCAAGATGGCCCA-GGCAGTGGGTGTGAAGGTCATCTGCCCCAGGCAGAGGACACCAGCT----------CTGTGATGACTCAGGAGATCCAGGCCT--CCATCCAAGGACACCCTGT--GGCCACCCCACCTTGTG------ATTCAGTCTCCTTGGC-CCTGCCCC------------- s fr1.chrUn 41971664 251 + 349519338 -----GCCTCGGTC---TCGGAGTGTGACCAGAGGACTGTTTGTGACCTCAGTATCCGGAAGCGTAGCCCG-----------ACTTGCGAGGGTCCGACTGAGCGTGGAGTCCT----TTGTCATAGCGAACCACCGCCTGCACCACGGCT----------------------CCCGATGAAGTCAGATAGCT------CATCTGGTGGT---------TCTTCAGGGCCAAACCGTCCACGATGGTCTGGACGG---AAGGAGACGGTGTTTAAAACCTGAACTACAAAACACTCACGCCTCTGCAAAAACTC a score=68001.0 s hg17.chr13_random 82726 178 + 186858 ACCTGGTCAATGTTTCTCTCCACTGTCGTGATGTTGGGCAGAAGCTGGTTGTGCAGCCGGTGCTCCTCCACGGCCCGCTTCATGTCATAGCCGAACCAGAGGTTGTAGATGATGGCCTG-G------GGCATGGGAG--TGTGATCAGCATGGCTTGGGGGC-TGTGCGGAGTG-GGCAGGGCCAGGG-A s panTro1.chr23 26616824 179 - 50034486 ACCTGGTCAATGTTTCTCTCCACTGTCGTGACGTTGGGCAGAAGCTGGTTGTGCAGCCGGGGCTCCTCCACGGCCCGCTTCACGTCGTAGCCGAACCAGAGGTTGTAGATGATGGCCTG-G------GGCATGGGAG--TGTGATCAGCATGGCTTGGGGGC-TGTGCAGGGTG-GGCACGGCCAGGGAA s mm5.chr10 55177488 186 - 130633972 ACCTGATCAATGTCTTTCTCTACCGTTGTGGTATTAGGTAAAAGCTGGTTGTGCAGCCGGGGCTCCTCCACAGCTCTCTTCACATCGTATCCGAACCACAGGCTGTTGATGATGGCCTG-GCGGGAAAGGATACCAA--TATG-TCAGTATAGCCCAGGAGCAAGGGCAGAGAGAGACAGGAGCAGGAAA s canFam1.chr26 10653268 167 - 41009621 ACCTCGTCAATGTCTTTCTCCAGCGTCGTGGTGTTGGGCAGAAGCTGGTTATGAAGTCTGGGTTCCTCTACTGCCCGTTTCACATCGTAGCCAAACCATAGGTTATGGATGATGGCCTG-G------GGGTGGGGAGGTTGGGATCAGTGCGGTCCAAG----------------GGCAGGGGCTGGAGG s fr1.chrUn 289107647 175 - 349519338 ACCTTTTCGAAGCCCTGCTCCACCATCGTGATGTTGGGCTTCAGCTGGTTGTGGAACCGCGGCTCCTTGATGGCTTTCTTCAGGTCGTATTTGAAGAACAGTGAGTTGAGGATGACCTGAG------GGGATCGGGA--GCAGATGAAAACGCCGCCGCGTC-TCTGTGCGGTG------GGACTGGGGA a score=90761.0 s hg17.chr13_random 82904 161 + 186858 GAAAAGG--GGTGA-CGCATACCAGTGCAGTGGCTGTGGTGATCTGCGTGCCCCCAGCAGCTCCCACCACCATCCGGACCTGGCCGTCCTGGCCCACCATGATCGTTGGGAACATGGACGAGAGCGGCTGCTTCCCTGCGGCT--------GATGGGAGAAGACAG--GGATGC s panTro1.chr23 26617003 161 - 50034486 GAAAAGG--TGTGA-CACATACCAGTGCAGTGGCCGTGGTGATCTGCGTGCCCCCAGCAGCTCCCACCACCATCCGGACCTGGCCGTCCTGGCCCACCATGATCGTCGGGCACATGGACGAGAGCGGCTGCTTCCCTGCGGCC--------GATGGGAGAAGACAG--GGATGC s mm5.chr10 55177674 162 - 130633972 GGGCAGGCAAAAGG-CACATACCAGTGCAACAGATGTGGTGATCTGGGTACCCCCTGAGGCTCCGACCACCATGCGAACCTGGCCGTCCTTATCCAGGATGATTGAGGGACACATGGATGAAAGAGGCTGCTTACCTATGATC--------CATAGGAGGAGACAG--GGG-GC s canFam1.chr26 10653435 171 - 41009621 GGACAGGTAGGTGG-CACATACCAGCGCAGTGGCCGTGGTGATTTGTGTGCCCCCGGAGGCACCCACCACCATGCGGACCCGGCCATCCTGGCCCACGATGATTGCCGGACACATGGACGAGAGCGGCTGCTTTCCTGTGGTCAGCAGGTGGGTGGGGAGGGACAG--GGATGC s fr1.chrUn 289107822 162 - 349519338 GGACTGG--TCTGG--ACTTACCAGAGCTGTTGCCGTGGTGATTTTGGTGCCACCAGACGCTCCAACAACCATTTTTACTCTGTTTTCTTTGTCAAAGATGATGGTGGGACTCATGGACGACAGCGGCCTCTTACCTGAAACA--------GATGAAAAACACCAGTTTGAAAC s danRer1.chrNA 5069782 151 - 390413307 GAAATAA--AGTGAAAACCCACCTGAGCCTCTGTTGTGGTGATCTTTGTCCCTCCAGATGCTCCCACCACCATTTTAACCTGATTGTTTTTGTCCAGCAGGATTGCAGGACACATTGAAGACATGGGCCTTTTATCT-------------------GAGAAGCAAG--AGATTC a score=7760.0 s hg17.chr13_random 83065 12 + 186858 CCGTCAGCTGCC s panTro1.chr23 26617164 12 - 50034486 CCGTCAGCTGCC s mm5.chr10 55177836 12 - 130633972 TGGTCTGCTGCC s canFam1.chr26 10653606 12 - 41009621 TGGTCAGCTGCC s fr1.chrUn 289107984 12 - 349519338 ACGTCGGCTGCC a score=12858.0 s hg17.chr13_random 83077 54 + 186858 TGCCCAGGACACCCGCCCCTCTCCACCCCA-GTCCCCCACCCCCGGACCTCCACC s panTro1.chr23 26617176 54 - 50034486 TGCCCAGGACATCCGCCCCTCTCCACCCCA-GTCCCCCACCCCCGGACCTCCACC s mm5.chr10 55177848 55 - 130633972 TGCCTAGGGTACCAGCCCCCTCCCAACTCATGCCCTGCATCCCAGGATTCCCACC s canFam1.chr26 10653618 41 - 41009621 TGCCCAGGACCCCAGCCCTCTCCC-------GTCCTGGATCCC-------TCATC a score=108296.0 s hg17.chr13_random 83131 135 + 186858 CCATACCTGGCTGGATGAAATTGGCAGGTGAGGGGGGTACCCCAAACTCATTGGTGATGCTGGGAGAGCTGAAGTCGTCCA-TTCATTATTGAACAGGATCCCGCTGACCGGGGAGCAGACCTTGGAGCCAAAGCT s panTro1.chr23 26617230 136 - 50034486 CCATACCTGGCTGGATGAAATTGGCAGGTGAGGGGGGTACCCCAAACTCGTTGGTGATGCTGGGAGAGCTGAAGTCGTCCATTTCATTATTGAACAGGATCCCGCTCACCGGGGAGCGGACCTTGGAGCCAAAGCT s mm5.chr10 55177903 136 - 130633972 CTGCACCTGGCTTGATGAAGTTGGCTGGTGAGGGGGCTACCCTGAACTGGTTGATGAAGTTGGGCGAGCTGAAGTCATCCATCTCATCATTAAACAGGATGCCACTGACCCGAGACAGGACCTTGGAGCCAAAGCT s canFam1.chr26 10653659 136 - 41009621 CCACACCTGGTTTGATGAAGTTGGCTGGCGAGGGGGGCACCCCAAACTGGTTGGTGATGTTGGGGGAGCTGAAGTCATCCATCTCATCATTGAATAAGATCCCGCTGACATTTGATCGTACCTTGGAACCAAAGCT s fr1.chrUn 289108251 136 - 349519338 CCACACCTGGCTGGATGAAATTGTTGGGAGACGGAGGAATTCCGAAGCCGTTGGTCATGTACGGAGAGCTGAAGTCGTCCATTTCATCGTTGAAGATGATTCCGGTCGATCCTGACATAACTTTGGAGCCAAAGCT s danRer1.chrNA 5072237 136 - 390413307 CCTCACTTGGGACAATGAAGTTGTTTGGAGAAGGAGGAACTCCAAAGTTGTTGGTGATCAACGGAGAGCTGAAGTCGTCCATCTCGTTGTTCAGTAAAATACCTGTCGACTTTGACATCAACTTTGAGCCAAAGCT a score=4582.0 s hg17.chr13_random 83266 56 + 186858 A----------CCGCCCAGCAGGGTCAGACAGCG--------CCCGACCTTGCCTGGCCCAG--CCTGGTCCCTAT s panTro1.chr23 26617366 56 - 50034486 A----------CCGCCCAGCCAGGTCAGACAGTG--------CCCGACCTTGCCTGGCCCAG--CCTGGTCCCTAT s mm5.chr10 55178039 59 - 130633972 G----------AAGATAGGCCAGCTCAGATAATG-----ATATACAACCCAGCCATTCCCCA--CCTGGTCCCCAC s canFam1.chr26 10653795 61 - 41009621 G----------CAGACCAGCTGGATCAGACAGCT-----ATGCCAGATCCAGCCCTACCCCACCCCCAGCCCCCAC s fr1.chrUn 289108387 71 - 349519338 GAAACAGGAGAAAGTCCAGTGAATTCAGGGATCTCTTTCATTTCCGGTCGAGGCAGGTAGAA--CCTGGAGT---T a score=117290.0 s hg17.chr13_random 83322 365 + 186858 CCACCCACTGAGGCTGAAAC---ATACTCACTGAGAGGCCCAGGATAAG-----CTACCA--AGATTGGGC-----------CTCAGTTTCCCACC---AGGAAAAGAGGTGATGGAGCCACCTGACTGGATAAGTGGGTGGTCCCTGGGCCACCCACC-TCTGGCAGTTTCCCACCC--AGGCGGCCCAGCAGCCCCTACTAGAGGTTGATGGTGCTGGTGGCGGACACAGCACTGCCGTCCTCTGTGATGACAGACAGGTGAGCAGTGCCCCTGTCATCCGGCGTGTAGAACTTGGGCTTGTAGTAGGAGATCGTGTGAGTGGTGTTGTCAGAGATCTGGGCCCAGAGCTGGGCAGCGAAGAACTCAGAGGTCATGTTGCGGACCACCTG s panTro1.chr23 26617422 364 - 50034486 CCACCCACTGAGGCTCAAAC---ATACTCACTGAGAGGCCCAGGATAAG-----CTACCA--AGGTTGGGC-----------CTCAGTTTCCCACC---AGGAAAAGACGTGATGGAGCCACCTTACTGGATAAGTGGGCAGTCCCTGGGCCACCCGCC--CCGGCCCCTTCCCACCC--AGGCGGCCCAGCAACCCCTACTAGAGGTTGATGGTGCTGGTGGCAGACACAGCACTGCCGTCCTCTGCGACGACAGACAGGTGAGCAGTGCCCCCGTCATCCGGCGTGTAGAACTCGGGCTTGTAGTAGGAGATCGGGTGAGTGGTGTCGTCAGAGATCTGGGCCCGGAGCTGGGCAGCGAAGAACTCGGAGGTCATGTTGCGGACCACCTG s mm5.chr10 55178098 280 - 130633972 CCAGCCC---AGGCCAAGA----GCACTTACTAGGAGCCCCA------------------------------------------------CCCAC-------------------------------------------------------CCACCCACCCCCAGGTCCCTGCTCTGCC--CAGCAGCTGCACAGCCCCTACTAGAGGTTGATGGTACTAGTGGCAGCCACAGCACTGCCATCCTCTGAAACCGCAGACAGGTGAGCGGTGCCTCCATCATCCTGAAGGTAGAATTCAGGCTCATAGTAGGCGGCTGGGTGGGTGGTTTCATCAGTGATGCGGGCTCGGAGCTGGGTGGCGTAGAACTCAGAGCTCATGTTGCGGATCACCTG s canFam1.chr26 10653856 350 - 41009621 CCACCCACCAAAGCTCCAAC---TTGATCCCAGTGAGGCTGGGGGGCAGGTGCTCTACCA--AGGTGGGGC-----------CTCAGTTTCCCACC---ATGAAAGGGGTCGATGGAGCTCCCTTCTGGGAGAGGCAAGCAGCCCCTGGCCCACCCAGG-----------------------GCCACCCGGCAGCCCCTACTAGAGGTTGATGGTGCTGGTGGCCGATACAGCGCTGCCATCCTCTGCGACCACGGACAGGTGGGCAGTGCCACCGTCATCAGGCGTGTAGAACTCAGGCTCATAGTAGGAGGTCGGGTGAGTGGTGTTGTCAGAGATCCGGGCCCGGAGCTGAGCAGCAAAGAACTCGGAGCTCATGTTGCGGACCACCTG s fr1.chrUn 289108458 322 - 349519338 CTGCTC-------CTTAAAC---TGGCGTTCGTGGAACCCAAAAGTCAG-----ACAGCACTCAATTATTT-----------CTCAGTTGTTTTCC---CAGTAATGTTTGAAT---------------------------ATTCAGGGAACATTTACG----GGTTTCCTGTTTCCTGAAGGCG----------TCTTACTACAGATTGATGGTGCTGGTCGCCGCCACGGCGCTCCCGTCCTCTGCTATGACGGACAGGTGACTCGTCCCGTGGCTATCTGGGACAAAATAATCTGGTTCGTAGTAGTTGTCTGGATGTGTGGTGTCGTCTGTAATTTTACTCCTGATGTTGTTGGCGAAGAAATCCGAGGTCATGTTCCTGATGAGCTG s danRer1.chrNA 5072630 335 - 390413307 CCACGCCC-----CTCATACTGTTAGTTTGCTAAGAGG----GAATGAT-----GTGCAA--AAAGAAAGCCCCGCCCCCTACTCAATATTCCATTTCAATTAAAAG------TACATCAACACAATGAAATAAAAG------------------TATT--TTAATTCCCGCTGACTT-------------TAACTC--ACTATGTATTGATGGTGCTGGTAGCGGCGACCGCACTGCCGTCCTCCGCCACCACCGACACATGTGATGTACCGTAGTTTTCGGGAAGGTAAAACTCGGGCTCGTAGTAGCTCTCCTGCTGCGTGCTGTTATCTGTGATCTTGAGGCGGATCATGTCAGCGTAGCCTTTGGAGGTGATGTTCTGGATGAACTG a score=7406.0 s hg17.chr13_random 83687 12 + 186858 CCGAGACCCCAG s panTro1.chr23 26617786 12 - 50034486 CCGAGACCCCAG s mm5.chr10 55178378 12 - 130633972 CCGAGACCCCAG s canFam1.chr26 10654206 12 - 41009621 CCGAGACCCCAG s fr1.chrUn 289108780 12 - 349519338 AGGAGAACAAAG a score=89040.0 s hg17.chr13_random 83699 486 + 186858 AGCTGGCCTGAGGAGGTGGGGAGGGAG--GGTGGGGAGGGGGCACA-----------------GGTCTCAGAAGGCCCCTGACTGTGACTCTGACCAAAACCCTCTGGCACCCACAACCTTCCGTGGCTCCCCAGGACCCAAGGGCAGGCCCAGGACCTTGCATGACCAGTCTGACTCCCTGTCTCTGTTGCGTTTCAGCAACTCTGAATGTCTGTCTGCCTGGTCCTC-AGCCTCCAGACCCTTGCTGCATTCAATCACTCattccttcatgcaaaaaatatttctagagtttgcactgcatgcctggcactggggaatcaacagggaacagacagttttaggt-cctgccc------tcatgccaagaaaaacaaacacacacagggaaagtgct-gaaaccacaagccaggtaaggggaatcaagaggcatgaggtatgggcagagtggtcagggagggcttctcagaggaggcaacgtgtg--aaaagagcctggaatgcggcctaaatggt s panTro1.chr23 26617798 484 - 50034486 AGCTGGCCTGAGGAGGTGGGGAGGGAG--GGTGGGGAGGGGGCACA-----------------GGTCTCAGAAGGCCCCTGACTGTGGCTCTGACCACAACCCTCTGGCACCCACAACCTTCCGTGGCTCCCCAGGACCCAAGGGCAGGCCCAGGACCTTGCATGACCAGTCTGACTCCCTGTCTCTGTCGCGTTCCAGCAACTCTGAATGTCTGTCTGCCTGGTCCTC-AGCCTCCAGACCCTTGCTGCATTCAATCACTCattccttcatgcaaaaaatatttctagagtttgcactgcatgcctggcactggggaatcaacagggaacagaca--cttaggt-cctgccc------tcatgccaagaaaaacaaacacacacacggaaagtgct-gaaaccacaagccaggtaaggggaatcaagaggcatgaggtatgggcagagtggtcagggagggcttctcagaggaggcaacgtgtg--aaaagagcctggaatgtggcctaaatggt s mm5.chr10 55178390 414 - 130633972 AGCTGGCCTGAGGAGGTTAGGAGGGAGGAGGCGGGAAGGGGATGCAACAGGGCTGTCCCAGCTGGTCTTAGGAAGCCCCAG-CCGCGGATCTTACCTCTATGCT----AAACCAGGAC---------CTCCCCAGGAC-------TAGGGACAGTACCTTCTAAATCCCGTCCGACACCCTCT-----TTAACCTCCAGC--CTGTGACTGTCTGTC--------CCTCAAGCCACTAGACCCTTGCCATGTTC--TTACATGATCTGT------GTGATTGTTTATGGAACTTG-------TGGTCAGAGCTGAAGAATCAGCAGGGAAGA------TTCGAGT-CTTGAACAGTGTAACATGGAGAGAACACTA---GTAGGCAGGGAGAGTATTGGAAATGGGAGGCCAGACGACAGGAATAGAGAGGCAGGAAGCAT---TCTAGTGG--------------------------------------AGAGCCCTGAATGAAACCTGAGGGGT s canFam1.chr26 10654218 445 - 41009621 AGCTGGCCTGAGGAGGTGGGGGGG-----GATGGGGAGGGGGCACA---GGCTTGTGCGAGCAGCTCTTAGGAAGCCCCCCGACATGGCCCTGACCACAACCCTCCTGCACACTCAACCTCAGGAGGCCCGTCTAATC----------------------------CCCTTTCCAGCCTTTGTCTCTGCTGCAGTCCAGCAACTGTTAATATTTGTCTGTCCACCCCACAAGCCCC--GACTCTTGCCAcattcaatcattcattcatt-----------cattcCTGGAGCTTGTACTGTATGCTTG------------CGACAAGGAACAGACA--CACAGGTCCCTGCCT------TCCTGGCAGGGAAGACAAAGGCAGGC--GGGACATGCTGgaaagaacaagccaggtaaaggggatggagagggctgaggtgggggcagagtggtcagggaggccttcttggaggaggagacatctgaaaaaaaagccctgaatgaggcctgagtggt a score=7473.0 s hg17.chr13_random 84185 47 + 186858 cagtgcaaaggccctgaggcaggtggtataggctggtgagcgatagg s panTro1.chr23 26618282 47 - 50034486 cagtgcaagggccctgaggcaggtggtataggctggtgagcgatagg s canFam1.chr26 10654663 38 - 41009621 aaatgcaaaggccttaaggc---------aggcctatgagagacagg a score=85484.0 s hg17.chr13_random 84232 542 + 186858 cagagagtgaatggagtggggtggggagaagaggatgaagatgcaggct-ggggcccatcccacaggacctcctaggtcccataaaaa--ctggc-ttttgctctgtgccatgcaggcttagggcagaggaatgagcaggctggggagtgttttcacagggtccctctggcagctatgacggggataaggataaatcccaaaggggaggctgtgggtatcaaccaggcaagagatga----tgg------cctgggtgggaGAAAGAGA------------------AGAATCaaggatggtgctgactagcgaggtaaa-ccctgcagaaggggcaggtttggggatggtcagaa----gcttgattttggaca-----cttcatcagacctgaa----cagcatgggtgcaagtataaaaaaaataaataaataagcatg-----ggttcacgggcaagggcgggctgagagatgaacatggaggtattgacattgagtggctgctggatgccatgagcctggccaaggtccccaaggcagtgg-------cgaggaggagatgaggaggtcaaggaGGAGA---------CAGAGAGGATGGACCC s panTro1.chr23 26618329 541 - 50034486 cagagaatgaatggagtggggtggggagaagaggatgaagatgcaggct-ggggcccatcccacaggacttcctaggtcccataacaa--ctggc-ttttgctctgtgccatgcaggcttagggcagaggaatgagcaggctggggagtgttttcacagggtccctctggcagctatgacggggataaggataaagcccaaaggggaggctgtgggtatcaaccaggcaagagatga----tgg------cctgggtgggaGAAAGAGA------------------AGAATCAAGGATGGCGCCGACTAGCGAGGTAAACCCCTGCAGAAGGGGCAGGTTTGGGGATGGTCAGGA----GCTTGATTTTGGATA-----CTTCATCAGACCCGAA----GAGCATGGGTGCACGtataaaaaaaaaaaaaaaaaaaGCATG-----GGTTCACGGGCAAGGGCGGGCTGAGAGATGAACATGGAGGTATTGACATTGAGTGGCTGCTGGATGCCATGAGCCTGGCCAAGGTCCCCAAGGCAGTGG-------CGAGGAGGAGATGAGGAGGTCAAGGAGGAGA---------C--AGAGGATGGACCC s mm5.chr10 55179001 480 - 130633972 TGGAGAATGAAC-------------------AGGATGAAGGAAGAGGCT----------------TGACTTC--------------------GGCTTTTTGCTACAAGCCACACAGGCTTGGGGTAGAGGAGTAAGCAGGATGAGAAAGATTTTCATAGGTTCCATCTGG----------GGGGGT----------CCC--AGAGAAGACTGTGGACAACCACCACATGACAGATGA----AGATGTCACTGTGGGTGGGAGAAAAATATAGTGGCCTTGAGGTCTTTGGCCTGGAGTTGTCGTTACCTGGGAAAATAAA-CACTAAAGAAGGAGCAGATGGAGGGGCAGCTAGGGACTTGCTTGCTTTGGGACACACAGCCACGACACACTAAAAAACTCAGCTTGGGTGCGTG-----GGCTCATGAACACAGGTTCCTGTGTGAAGTTCACAGGCAA-----GACAAAGATGCAAACAT---GGTATGGGCATAGGACGGCTGCTGAGAGCTATGGGT----------------------------------GGGAGAGGATGGGGAGGTAGAGGAAAAGGGGGCACAGCCAGAAAGAAAGGGACC s canFam1.chr26 10654701 551 - 41009621 cagagggtgagtagggtgga--agagagcggtagaggaagacattggcaggggggtgaccccataagtctttagaagccctataaggaatttggc-ttttgcttggagccacctgggtccaggacaaaggatgcagcacactggtag-----ttcacaggatccctctggtggctgtgtgggggtagaggggagaacccaactgggaggctat-gacatcaaccaagtgagagatggtgcctgg------cccaggtgggacagAATCA--ATGGCCCCAAAGCCTTCAGTCCAgagtggccattaactggggaagtaaa-cactgtggaaggggcagtggaggggacagtcagaa----gcttggttttgaacaggtgccctttcctgtctcagg---------tgggcggtgg------------------atctacatgtgtggagttgacaggcaagatcaggctgagggatacacatggagccgtcagcctctgctggctgcttaaagccatgagcctgaacatggtccccacggcgggaggacagatggaggaagaggagaggAGATGAGATAGGAGC---------CAGCATGGAAGGCCCC a score=3973.0 s hg17.chr13_random 84774 25 + 186858 -GAAGGC----CGAAGAAAATGCCTCAAGA s panTro1.chr23 26618870 25 - 50034486 -GAAGGC----CGAAGAAAATGCCTCAAGA s canFam1.chr26 10655252 30 - 41009621 TGGGGACTGAGCAAAGGAAATGCCGCCAGA a score=32433.0 s hg17.chr13_random 84799 372 + 186858 GAGTTTCCACAccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcctgtaatcccagcactttgggagggcggatcacgacgtcaggagatcgagaccatcctggctaacacagtgaaaccccatctctactaaaaatacaaaaaattagctgggcgcggtggtgggcacctgtagtcccagctacttggggggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcgacagcctgggggacagagcgagactccatctcaaaaataaaataaataaaatacaataaaataaaataaaataaaataaa s panTro1.chr23 26618895 363 - 50034486 GAGTTTCAACAccgggcgcggtggctcacgcctgtaatcccagcattttgggaggccgaggcctgtaatcccagcactttgggagggcagatcatgacgtcaggagatcgagaccatcctggccaacacagtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgcggtggtgggcacctgtagtcccagctacttggggggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagtaagccgagatcccgccactgcactccagcctgggggacagcctgggggacagagcgagactccgtctcaaaaataaaataa---------aataaaataaaataaaataaaataaa a score=25379.0 s hg17.chr13_random 85171 147 + 186858 GTTTCAGCAACACCCCACAGATTAGTTGACCAATCCGAGGGAAAGGTGTTCTGTCTGAAACTGCCCTCAAGGAAACAGAAAGGCAAATCCATGATGTGGGAC-ATTTTCCAAGACTACTGCCCTGGGCTTTAAAAATCAACAAAACAg s panTro1.chr23 26619258 147 - 50034486 GTTTCAGCAACACCCCACGGATTAGTTGACCAATCCCAGGGAAAGGTGTTCTGTCTGAATCTGCCCTCAAGGAAACAGAAAGGCAAATCCACGATGTGGGAC-ATTTTCCAAGACTATTGCCCTGGGCTTTAAAAATCAACAAAACAg s canFam1.chr26 10655284 128 - 41009621 TTTCCAGCAACATCCCACA--------------------GGGAAAATGTTCAGCCTGAATCTACTCCCAAGAAAACAAAAAGTCAAATCCAGGATGTGGGATGGTTCTGCAAGAAGACCGCCCTCGGTTTTATAAATCAGCCAAACAG a score=49790.0 s hg17.chr13_random 85318 566 + 186858 gccaggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggaggatcacgaggtcaggagatcgcaatcacggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgcagtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagctgagatagcgccactgcactccagcctgggtgacagagagagactctgtctcaaaaaaaaaaaCACAcacacctgtaatcccagcactttgggaggctgaggtgggaagatagtttgatcccaggagtttgagaccagtctgggcaagaccctgtctctaaaaaacatacaaaaattatccaggtttggtggcacgtgcctctggtcccagctgctcagggggctgaagtgggaggattgcttgagccat-ggaggttgaggctgcagtgagccaagatcacaccactgcactccaacctggatgacagagactctgtgtccaaacaaaaacacaacaaaaacaaaaCAGC s panTro1.chr23 26619405 561 - 50034486 gccaggcatggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcggatcacgaggtcaggagatcgcgatcacggtgaaa-cccgtctctactaaaaatacaaaaaattagctgggcgcagtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccaggaggcggagcttgcagtgagccgagatagcaccactgcactccagcctgggcaacagagcgagactccgcctcaaagaaaaG-----AcacacctgtaatcccagcgctttgggaggctgaggtgggaagatagtttgatcccaggagtttgagaccagtctgggcaagaccctgtctctaaaaaaaatataaaaattatccaggtttggtggcacgtgcctctggtcccagctgctcagggggctgaagtgggaggattgcttgagccctgggaggttgaggctgcagtgagccaagatcacaccactgcactccaacctggatgacagagactctgtgtccaaacaaaaacacaacaaaaacaaaaCAGC a score=132755.0 s hg17.chr13_random 85884 1068 + 186858 CAAGGGAGCCTACTGTAGGTAAAGAGAAGGG-----------------------ACAGCAGGTTG------------------------TGTCACCCC---------------------------GACATCCTGCTGTGCTATGTTCAAGTCTC---ACTTTTGAGACACACCCTGAGGTGTGACATCAGTAACCTACTGTGGAATCCCTCAGAAAA-ACACGAATCCCAAT--AGATGTGGGTGGAGATGGAGAGAGTT--AGGAAATCCGGCAGAAACGTCCACACTGCAGACTCCAGGAAAAGGGAACATTGATGCTTGGGCAGTTTT-GGTTTTTTTTTACATTTTTGTAAGTGCGAAAATTTGCAAAATGAAAACTCGAGGAGAG--TGTGGTG----AGCTGTGTGAGATGCTGCTGAGTGGGGCTTGATGGGGAAACTGAGGCTGGACATGGCGATCTGGTGGCATGGGGATAGAGCAGGGGAGGGGATACCCTGAAGGG--------AGAGAGGACATAGC----------------CCAGCCATGTTTGCTCTAAGAGG-AGCAAAGGACAGAAGGAGGCAGCAGATAGAAATTTCTAGAGCAACAACAGC-TGCCTTTCTTTTGGGAATAATCCGTGATAAAGAAGTAAAT-----CGTCAGAGGCAGAAAGGAGCATTGTAGGAACAGCACCCTGAGCCAGCGAGTAGATG---AAAGAGTTGGCCTTAGCCAAAAGGGAGGGCAGAGGGACACGC--TGCAGTGGCTCTGTCCCCTCAGAGAGACAAGACATCAGGTCACTGGCTGCAGCGGGAGTCAGAGGTGCAGAATGCTCACGGGGAAAGAGAAGACACCACCCGGGCAGCTGACGCCCCTC-------CTGGGAGGTCACTGGTCAGTGTGGGGGGCGTCTGCAGATCCACCCAGGAATGCCAAGGACCCAAGTAGGTAAGGAGGAATGTGAGGATCCTCAGCGGGAAGGGATATGACAGGGTCTTA-TAGGGACCCAGCGTGGAGCTGGAGCAACTACTGAGTGAGTGGGTCAGGTGGTGCAGGG-CTGAGGGTGGCATCTGGGAAGCGTTAGTTTGGAGT----GACAGGGAGTGGGTGGCCGAGGTCTCTGTTCACCTGGCCCTCTCCCTTTCACCCATCCATCTCACCATGCCCGAGGGCTGCAATGCCCCCATG s panTro1.chr23 26619966 1071 - 50034486 CAAGAGAGCCTACTGTAGGTAAAGAGAAGGG--------------------ACAACAGCAGGTTG------------------------TGTCACCCC---------------------------GACATCCTGCTGTGCTATGTTCAAGTCTC---ACTTTTGAGACACACCCTGAGGTGCGACATCAGTAACCTACTGTGGAATCCCTCAGAAAA-ACACGAATCCCAAT--AGACGTGGGTGGAGACGGAGAGAGTT--AGGAAATCCGGCAGAAACGTCCACACTGCAGACTCCAGGAAAAGGGAACATTGATGCTTGGGCAGTTTTGGGGTTTTTTTTACATTTTTGTAGGTGTGAAAATTTGCAAAATGAAAACTCGAGGAGAG--TGTGGTG----AGCTGTGTGAGATGCTGCTGAGTGGGGCCTGATGGGGAAACTGAGGCTGGACATGGTGATCTGGTGGCATGGGGATAGAGCAGGGGAGGGGATACCCTGAAGGG--------AGAGAGGACATAGC----------------CCAGCCATGTTTGCTCTAAGAGG-AGCAAAGGACAGAAGGAGGCAGCAGATAGAAGTTTCTAGAGCAACAACAGC-TGCCTTTCTTTCGGGAATAATCCGTGATAAAGAAATAAAT-----CATCAGAGGCAGAAAGGAGCATTGTAGGAACAGCACCCCGAGCCAGCGAGTAGATG---AAGGAGCTGGCCTTAGCCAAAAAGGAGGGCAGAGGGACACGC--TGCAGTGGCTCTGTCCCCTCAGAGAGACAAGACACCAGGTCACTGGCTGCAGCGGGAGTCAGAGGTGCAGAATGCTCACAGGGAAAGAGAAGACACCACCCGGGCAGCTGACGCCCCTC-------CTGGGAGGTCACTGGTCAGTGTGGGGGA-GTCTGCAGATCTGCCCAGAAATGCCAAGGACCCAAGTAGGTAAGGAGGGATGTGAGGATCCTCAGCGGGAAGGGATATGACAGGGTCTTA-TAGGGACCCAGCGTGGAGCTGGGGCAACTACTGAGTGAGTGGGTCAGGTGGTGCATGG-CTGAGGGTGGCATCTGGGAAGCGTTAGTTTGGAGT----GACAGGGAGTGGGTGGCCGAGGTCTCTGTTCACCTGGCCCTCTCCCTTTCACCCATCCATCTCACCATGCCCGAGGGCTGCAATGCCCCCATG s canFam1.chr26 10655413 1066 - 41009621 CAAGAG-GTCTAGTGTAGGTTCAGAGACAGAGGCGATATAACCATGACTGCAAGGCAGGAGTCTGACGGGCTCTGGACCGAAACAACCCTGGGACCCCCGGCAACACAGGCGTCTAACAGGCCAGGGCCTCTCGGTGGAGTGTGTAGGAGTCCTGGGGCTTAGGAGCTACAACCCAAAGTGTGATTTCGGGGACTGGCCATCTGATACCTGAAAAAACACATGCATGTCAATAAAGAGGCACCCGGACACAGGGAGAGACGAAGGGAATGTGGCAT-AATGTCCAC------------------------------------------------------------------------------TTTACAAAATGAAAAGCTGAGGAAAGGAGGTGGTGAACAAACTGTGGGAGACGCTGCTGAGGGGGGCCCGAAGGGGAAACTGAGGCTGGAC-------TCAGGGGGAGCGGTGAGGGGTCCTGGCAGGAGG-GTCCTGACAGGATGGGAGCAAGGAGGGCAGAGCGTGAGAAACGGATGGAGTGGCCAGGTGTGCTCTGAGTGGAAGCAGAGGA---ATGGGGGCAGCAGCTGGAGA-CTCTGAAGTGAAAAGAGTATGCC--TCTCTCGGGAATGATCTGTCAGGAAGGGCAGGATGGGAATGCCAGAGGCAG--AGCAGTGCTGCAGGAGGGGCATGCTGAGTCAGCAGGTGGAGGAGCAGGGGGCCAGCCTCAGCCAGGAGGGAGGCCTGAGGGGGAGGCCATGCAGTGGCCCT--------AGGGATATGAGACACCAGGTCACTGGCTGGGGCGGGGAGCGGGGGTGGGGG-----CATCGGGAAAGAAGAGAGAT--CCAGGAGAGCAGAGGGGCTGCAGGGCAGCTGAGAGG-CATAGGTCAGTGTGATGGG-GTCAGCAGGCCTACCCCAGAATG-GGGGGATCCAAGTAGGTAAGGGGGGCCAGGAGG------------------------AGAGTCTCAGTGAAGGCCCAGCCTGGAGCTGGGGCTTCTGGC-AGTGAGTAGGTCAACTTGGGGAGGGCCTGGGTGAGGGATCACAGAAGTGTCAGCTCCTGGTTGTGAGCAGTGAACCAGAGGCCCAGGCCAATG-CCACCCAGGACGCTGCCCCGTCCCCACTCTTCTCAGGACCCTTGAGGACTGCCATGCCCCCATG a score=47381.0 s hg17.chr13_random 86952 275 + 186858 CATTCCTCATCTCAGCACTGAACACTCGAGAA-----------------CCacagcatgtgcaaaggacctgaggtaggag--ggtgGCCACTAATTCCC--------CACACTGTCAGTTCTGTGGGGCAGAAGCCAAGACTGGGGGTCACCCACCAGTCCATCCGAGCACACAGTAGGCCC--GCAATCAAAGTTCGTGGCA----------------------------------GGAATGGATTCATAAAGCGTATGTGAGGCT------GTAGCCACCCTGGGGAGCCCACCTGATGCCTCTACAGCAGGCCCCACACCCACAGTGGGCCAGCCCCTGC s panTro1.chr23 26621037 275 - 50034486 CATTCCTCATCTCAGCACTGAGCACTCGAGAA-----------------CCacagcatgtgcaaaggccctgaggtaggag--ggtgGCCACTAATTCCC--------CACACTGTCAGTTCTGTGCGGCAGAAGCCAAGACTGGGGGTCACCCATGAGTCCATCCGAGCACACAGTAGGCCC--GCAATCAAAGTCTGTGGCA----------------------------------GGAATGGATTCATAAAGCATATGTGAGGCT------GTAGCCACCCTGGGGAGCCCACCTGAGGCCTCTACAGCAGGCCCCACACCCACAGTGGGCCAGCCCCTGC s mm5.chr10 55181443 311 - 130633972 CATTCCTCCCTTCTATACTGAGCACTCCAGAATCCTCCAGGGCAAAGGCCCAC-GCATGTGCAAAGGATCTGAGATAGGAG----------CTGGGTTGC--------AGAGGTGTTGGGTTTGGAGGCAGGATAACAAGTCTG-----CTTTCCTCAGTTTCCCCA---ACACTATGAGCTCCAGCAACCAGAGGTCAGGGTAACGAGTAACATGGTAACGAGTCTGCCCTGAAATCAGACTAGGTTCAGAAAGCACAAATGAGGCTGGTGGGGTGGGTGGTTTTCAGAGCTCACCCAGCACCCCTTTGGCATGTCTCCCACCCACTGTGAGGTA------CC s canFam1.chr26 10656479 271 - 41009621 TATTCCTCACTTCAGCACTGAACGCTCCAAGG-------------------------TGGGAGTGTGGCCAGGGGTAGGGGCCACCCATTACTCATTGCCAAGTCTATCACACTGTGAGCTCC-TGTGGCAGAGGGCCAAACTCGAGGTC-----TCAGTCCCTCCTAGAGCATGGTAGGCCC--ACCACCAAGGCTGGTGGTA----------------------------------GGAATGGATTAATAGAGCATGTGTGAGGCT------GGAGTGGCCCCAGGGAGCCCTTCGGGCACCTCCATGGCAGGACCCCCACCCATCACAAGCCAGCTGCTGC a score=1476.0 s hg17.chr13_random 87227 2 + 186858 CC s panTro1.chr23 26621312 2 - 50034486 CC s mm5.chr10 55181754 2 - 130633972 CC s canFam1.chr26 10656750 2 - 41009621 CT s fr1.chrUn 289108861 2 - 349519338 CC a score=106320.0 s hg17.chr13_random 87229 145 + 186858 CTTACCTCAGTCACATTCACAAACTTGGGGTCCCCAAGCAGGGTCCTCTTGGCGTAGGCAAACCAGAAAGCCTCTACGATGCGGTGGTACGTCAGGCCCTTCTGCTCGGGGGTCTCCACACTCTCCCAGGAGAAGTTGTACCCTG s panTro1.chr23 26621314 145 - 50034486 CTTACCTCAGTCACATCCACAAACTTGGGGTCCCCAAGCAGGGTCCTCTTGGCGTAGGCAAACCGGAAAGCCTCTACAATGTGGTGGTACGTCAGGCCCTTCTGCTCGGGGGTCTCCACGCTCTCCCGGGAGAAGTTGTACCCTG s mm5.chr10 55181756 145 - 130633972 CTTACCTGAGACACATCGACAAACTTTGGGTCACCGAGCATGGTCCTCTTGGCATAGGCAAACCGAAAGGCCTCCACGATACGGTGATACGTCAGTGCCTTCTGTTCAGGGGTCGCTACGCTCTTCGGAGAGAAGTTGTATCCTG s canFam1.chr26 10656752 145 - 41009621 CTCACCTCCATCACACTGACAAATTTGGGGTCCCCAAGCAGGGTCCTCTTGGCATAGGCAAACCGGAAGGCCTCCACGATGCGGTGGTAGGTCAGACCCTTCTGCTCGGGTGTCTCCACACTCGCCCGGGAGAAGTTGTACCCTG s fr1.chrUn 289108863 144 - 349519338 ATTACATCAGTGATGTTGAGATATCGAGGGTCTCCGAGGCGACTTCTCTTGGCGTA-GCGAACCGGAAGGCTTCGACGATGCGGTGATACGTCAGAGTCTTCTTCTCGACTGTGGAGACGCTGAAGTCTGAGAAGTTGTAGCCTG s danRer1.chrNA 5073871 145 - 390413307 CTTACGTCAGAGATGTTGAGGAACTGCGGATCCCCCAAGACGCTCCTCTTAGCATAGGCGAAACGAAATGCCTCTACTACCCGATGATAAGTGAGGATTTTCTTTTCAGTGGAGGAGACACTGTCTGGACTTAAGGAATAACCTG a score=100.0 s hg17.chr13_random 87374 1 + 186858 G s fr1.chrUn 41973211 1 + 349519338 G a score=12978.0 s hg17.chr13_random 87374 129 + 186858 GTTGATCAGAGCCAGGTGCATGTTGCTGAGCC---------------------------CCAGAGGCTCTGAGGGGCTCAGAG--GGTTAACA-CCTGCCTGAGCCACTTTGCCCACCTC------------AAGGAGCGTTTAATAACCAATAGCAGCAGCTGCTTCAGA s panTro1.chr23 26621459 129 - 50034486 GTTGATCAGAGCCAGGTGCATGTTGCTGAGCC---------------------------CCAGAGGCTCTGAGGGGCTCAGAG--GGTTAACA-CCTGCCTGAGCCACTTTGCCCACCTC------------AAGGAGCGTTTAATAACCAATAGCAGCAGCTGCTTCAGA s mm5.chr10 55181901 127 - 130633972 AATGGT---ATCCAAGTACATACTGGT----------------------------------AGTAACT----GGGGCTCAAGG--GGTTAACA-CATCTCTTAGCCATGTTCCCCACCCTCTACCATAGGAAAGGAAATAGGTAACAACCTACAGCAATGGCCATGCAAGA s canFam1.chr26 10656897 129 - 41009621 GTTGAGCAGAGATGGGTGCACGTTGGCGGTCCCAGGTCCCTTGGGACGTCCCAGCTCGGCCAGAACAGCTGGGGGCCACAGGGTAGGCTCACGTCTTCCCTGAATTACTCTGTTTGGCTC------------A------------------------------GCTTGAGA a score=0.0 s hg17.chr13_random 87503 21 + 186858 AGGCTGTGGTGAGAGTGAAGT a score=1918.0 s hg17.chr13_random 87503 10 + 186858 AGGCTGTGGT s panTro1.chr23 26621588 10 - 50034486 AGGCTGTGGT s mm5.chr10 55182028 10 - 130633972 AAGGTATGGT a score=1046.0 s hg17.chr13_random 87513 11 + 186858 GAGAGTGAAGT s panTro1.chr23 26621598 11 - 50034486 GAGAGTGAAGT a score=7402.0 s hg17.chr13_random 87524 66 + 186858 AAGGTGAGGGCTCCCGAGCCTGGACCTCACGTCACGCATCAG--------CTCTGGCCATTCGGT-------GACCAAGTG s panTro1.chr23 26621609 66 - 50034486 AAGGTGAGGGCTCTCGAGCCTGGACCTCACGTCACGCATCAG--------CTCTGGCCATTCAGT-------GACCAAGTG s canFam1.chr26 10657026 81 - 41009621 AAGGGAACAACCTCTGGGCCTGGGCCTCAAATGTCCAGCCGGAAGGGCTACCCAGTCTATGCAGTCCCAGAAGACCACTTG a score=15910.0 s hg17.chr13_random 87590 164 + 186858 ------GCAGGGTCACCC--ACTGGACCAGGGTACCCTC--------------------------TGGAC--------CAGGCCCTG-CAGCCCTGAGCTCCT---------------------------------GCACCTCTCTCCTTCCTGATGACTCCTGTTCCTCCTCCAACCCTTGAGCATTGCCCGCTTC--------------------AGCCCT-GTCGCTCTGCACTGCCTCCTTCAGGACATGGTGAGCT s panTro1.chr23 26621675 164 - 50034486 ------GCAGGGTCACCC--ACTGGACCGGGGTACCCTC--------------------------TGGAC--------CAGGCCCTG-CAGCCCTGAGCTCCT---------------------------------GCACCTCTCTCCCTCCTGATGACTCCTGTTCCTCCTCCAACCCTTGAGCATTGCCCGCTTC--------------------AGCCCT-GTCGCTCTGCACTGCCTCCTTCAGGACATGGTGAGCT s mm5.chr10 55182297 173 - 130633972 ------GGAAGATCACGTAGACCAGCCAGAAGCACACTC--------------------------TAGA---------TAAGACTTC-CTGCCTTGAACTCC------------------------------------------CTGACTCCTCCTGAACATTTTTCCTCCTCTCGCTACTAAGCATCACCCCCTATCCTTCTCACCCCTTGTGAGGAGCCCT-GGCACTCAACGCTGCCTC---CAGGAGGCTACAAGCC s canFam1.chr26 10657107 212 - 41009621 GATTTTCCAGACACCTCC--TCTGGACCAGGCCCCCCTCACTGTGAACTTCCAGCCCAGAGTAAGTGGGCAAGCCAGACAGACCCTGTCACCTCTAAGCCTTTGCAGGGGCAGTTCCCACCCCAGGACACTGCTCGGCACCTTTTGACCTCCC----ACTCCTCCTCCTCCTCCAGCCCCTGCCCATCGCCCCTCAC--------------------AGCCCTGGTCACTCTGCACT-----------------------C a score=-11917.0 s hg17.chr13_random 87754 133 + 186858 GTGACGCAG---GGACACGCCTCGGGAGCTCAGTGA-TGGAAAGACGTGGCATGGAGGGCGAGCAGAGATGCAGCAGGGGTGGGGCGTGGGGAGAGAGAGGCAGTGTCATGGGTCCTACCACACGGCT-----GTGGTGCGA s panTro1.chr23 26621839 133 - 50034486 GTGACGCAG---GGACACGCCTCGGGAGCTCAGTGA-TGGAAAGACGTGGCATGGGGGGCGAGCAGAGATGCAGCAGGGGTGGGGCGTGGGGAGAGAGAGGCAGTGTCATGGGTCCTACCACACGGCT-----GTGGTGCGA s mm5.chr10 55182470 63 - 130633972 ATGAAGCAGGCTGGACATTCCACTGGGTCTC-------------------------------------------------------------------------TGTCCCTGCCCCT-CAGCAGGGCT-----AGAGAGAGA s canFam1.chr26 10657319 14 - 41009621 ATGTCGCAT--------------------------------------------------------------------------------------------------------------------------------TGGGA s fr1.chrUn 41973856 129 + 349519338 GTGCAGCAG---GACCA--CCGCAGGACGTTAAACATTAAAAAGTTACACAATAAAGTGCGGACTAAG--------GAGAAAGTCTTCGGCTGGAGAGGGGCTGTTTCACAATGTTGACAGGTGAACCAGTAAATGGGGCGG a score=707.0 s hg17.chr13_random 87887 2 + 186858 CC s panTro1.chr23 26621972 2 - 50034486 CC s mm5.chr10 55182533 2 - 130633972 CA s canFam1.chr26 10657333 2 - 41009621 CA s fr1.chrUn 289109125 2 - 349519338 CC a score=95136.0 s hg17.chr13_random 87889 163 + 186858 ACTCACCTTTGAGGATGTTGAGGATGAGGGCCAGCACGGGCCCGCTGAGCGGCGCACTGGGCATGTACAGCACCGCGTCTCCCAGGCTGATGTTCAGCGGGTGCTCGATCAGCTCAGCACAGTAGTTGTTCAGGTCCTCAGCTGTCACAATGCCCCCTGCGAC s panTro1.chr23 26621974 163 - 50034486 ACCCACCTTTGAGGATGTTGAGGATGAGGGCCAGCACGGGCCCGCTGAGCGGCGCACTGGGCATGTACAGCACTGCGTCTCCCAGGCTGATGTTCAGCGGGTGCTCGATCAGCTCAGCACGGTAGTTGTTCAGGTCCTCAGCTGTCACAATGCCCCCTGCAAT s mm5.chr10 55182535 163 - 130633972 TCTCACCTTTGAGGATGTTCAAGATGAGAATCAGCACGGGCCCGCTGAGTGGGGCACTGGGCACGTACAGGGTCGCATCACCGAGGCCGATGCTCATCGGATGCTCAATCAGCTCAGCACGGTAGTTGTTGAGGTCCTCAACCGTCATAATGCCACCTGCCGT s canFam1.chr26 10657335 163 - 41009621 GCTCACCCTTGAGGATGTTGAGGATAAGAGCCAGCACGGGCCCACTGAGCGGGGCGCTGGGGACGTAGAGCTGGCTGTCACCAAGGCTGATGTTCAGGGGGTTCTCTATCAGGTTCGCACGGTAGTTGTTCAGGTCCTTGGCAGTCACAATGCCCCCTGCCAA s fr1.chrUn 289109127 158 - 349519338 TCTCACCGTTCACAATGTTGAGAATCAGGGCCAGAACCGGGCCGCTGGAGGGGGCATCTGCGATGTGCATGGTGTATTCACCGATGTTCAGGTTCAGAGGGTTCTCGTTGAGGACGGC-CTGTACTCCAGCAAATCCTTCAGTGTGATGATCCCACCTG---- s danRer1.chrNA 5085600 163 - 390413307 ACGCACCACTGAGGATATTCAGCATGAGTGTAAGCACTGGACCGCTGGACGGAGCGTCTGGTGTCACCATAGTAAATTCACCCACAGAAGCAGTAGGAGGATATTCATCCAGCAAAGCCCTATAATCTCTCAAGTCCGCCAGAGTTATGATCCCGTCTGCAAC a score=6185.0 s hg17.chr13_random 88052 24 + 186858 GGGACAGCAGC-----TC---GAATGGGCACT s panTro1.chr23 26622137 24 - 50034486 GGGACAGCAGC-----TC---GAATGGGCGCT s mm5.chr10 55182698 22 - 130633972 GGGACAGCAGC-----TC-----AGTGGCTGT s canFam1.chr26 10657498 27 - 41009621 GGGATGGCAGC-----TCAGTGGGTGGACACG s fr1.chrUn 289109285 29 - 349519338 GAACCAGCAGAGGTGGTC---AGATGGGCCCT a score=20061.0 s hg17.chr13_random 88076 310 + 186858 GGGATGGGGCTGCACCACTGC--GTGGAGGATGGAGCTGCACCA-GTGGTGTTGGGGGCAGGCATGGCTGCACCATGG-----------------TGGTGAGGAAAAGCCTGTA----------------------------CCTACAAAGGAGGACA-GAGTGCACTACTG-GAGGGGTGGGACTGTGCCCTGGGAGGAGGCCACAGG-----CAACCTCACCTCCTTGGGAACCTCACCAGCTCCGGCACTCCTGTCTCCCTGACACTGCTCACCACCCGACAGCTGGTCTGGGGCCACCTGCCCTCTGCCTGCTTGGCTTAGTGG-------CTTCC-TGTCTGCCTTCTCTCATCT--GTGGCCAGAGAGT s panTro1.chr23 26622161 310 - 50034486 GGGATGGGGCTGCACCACTGC--GTGGAGGATGGAGCTGCACCA-GTGGTGTTGGGGGCAGGCATGGCTGCACCATGG-----------------TGGTGGGGAAAAGCCTGTA----------------------------CCTACCAGGGAGGACA-GAGTGCACTACTG-GAGGGGTGGGACTGTGCCCTGGGAGGGGGCCACAGG-----CAACCTCACCTCCTTGGGAACCTCACCAGCTCCGGCACTCCTGTCTCCCTGACACTGCTCACCACCCGACAGCCGGGCTGGGGCCACCTGCCCTCTGCCTGCTTGGCTTACTGG-------CTTCC-TGTCTGCCTTCTCTCATCT--GTGGCCAGAGAGT s mm5.chr10 55182720 333 - 130633972 GTGATGGTGTTGTGTCATGGTTGGTTGGGGGCAGGGCTGTATCACGTGGGACTGGGTTTACCATTGGGCACGGTATGGGGTGAAACCGAGAAGTATGGCCAATGAAATGCTGTAGGGTCAGGGCTGTTTAAGGAGTTTGGTCACCACTGAAGAGGATATGTTTGTACCATAGTGAGGAGACGGTCTATACCATCAGAAGGGCCCACAGGGTTATCAAACTGATAGCCCTG--------ACCATCACCGGGACTCCCTAGGCACTAATGGTGCTTACCACCTA-------------------------------TGCCAGGCTCAAGAAGAGCCTCCTTCC-TGGTCAACCTTTCCTTTCT--ACGGCACAAGGGT s canFam1.chr26 10657525 174 - 41009621 GGGGTGGGGCCCCAAGTCTGA--CAGAAGCACCGGGC--CATCA-----------------------------------------------------------------------------------------------------------------A----------ACTG-GAGG-------------------------------------C--CCTGCCCACCTTGGGGGTCCCCCCCCCCCCG-------------------ACTTCTCACTGCCAG--------GCTCAGGCCAGCTGCCCTCTACCTGTTTGCCCCACTGA-------CCTCCAGGTCTGCTCTCTCTCCTCCTGGCAGCCAGAGAGT a score=1027.0 s hg17.chr13_random 88386 7 + 186858 GTTTTCt s panTro1.chr23 26622471 7 - 50034486 Gttttct s mm5.chr10 55183053 7 - 130633972 CTTTCCC a score=5516.0 s hg17.chr13_random 88393 68 + 186858 tt-----ttttttttttttttttagagataggatcttgctctgtcacccaggctggagtgcagtggcttaatc s panTro1.chr23 26622478 73 - 50034486 ttctttcttttttttttttttttagagatacgatcttgctctgttacccaggctggagtgcagtggcttaatc a score=80561.0 s hg17.chr13_random 88461 919 + 186858 acagccttgaactcccgggctcaagtgatcctccagcagaccctccccagtagctgagactaaaggcacaactacacccagcaaattttaattttttttgttgtgttttgctat-------tttttttttttgagacggagtctcactctatcgcccaggctggagtgcagtggcatgatatcggctcactgcaagctccgcttcccaggttcacgccattctcctgcctcagcctcccaagtagctgggactgcaggcacccgccaccacacctggctaatttttttgtatttttagtagagacaggtttcactgtgttagccaggatggtctcgatctcctgaccccgtatccacacgcctcgacctctcaaagtgctgggattacaggcatgagccaccatgcacggccaggttttgctatatttcttttcactatgctttgaattttttgttttcttgttccccacccccacccccactatatttatgtagattctcaatactttttt--gtagactcactatgttgcccaggcttgtcttggacctcctggcctcaacttctacctcagcctcccaaagtgttgtgattacagacatgagacaccaagcttggccTCAGAGGGCCttttttttctttttttttt---gagatggagtctcactctgtggagtgcagtggtgcaatctcagctcactgcaacctcagcccccgaggttctagcgattctcctgccacagcctcccaagcagctgggattacaggcacaacccaccatgcctgactaattttgcatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacagatgtgagccaccacacctggctCAGAGGGC s panTro1.chr12 22791423 921 - 117159028 acagccttgaactcctgggctcaagtgatcctccagcagaccctccccagtagctgagactaaaggcacaactacacccagcaaattttaattttttttgtTGTATTTTGCTGTAtttctttttttttttttgagacggagtctcactctatcgcccaggctggagtgcagtggcgtgatattggctcactgcaagctccgcttcccaggttcacgccattctcctgcctcggcctcccaagtagctgggactgcaggcacccgccaccacacctggctaattttttagtatttttagtagagacaggtttcactgtgttagccaggatggtctcaatctcctgaccccgtatccacacgcctcggcctctcaaagtgctgggattacaggcgtgagccaccatgcctggctGGGTTTTGCTATATTTCTTTTCACTATGCTTTGAATTTTTTGTTTTCTTGTTCCCCACCCCC-----CACTATATTTATGTAGATTCTCAATATTTttttttgtagactcactatgttgcccaggcttgtcttggacctcctggcctcaacttctaccttagcctcccaaagtgttgggattacaggcatgagacaccaagcttggcCTCAGAGGGCCttttctttctttttttttttttgagatggagtctcactctgtggagtgcagtggtgcaatctcggctcactgcaacctcagccccccaggttctagcgattctcctgccacagcctcccaagtagctgggattacaggcacaacccaccatgcctgactaattttgcatttttagtagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtgctgggatttcagac-----ccaccgcacctggctCAGAGGGC a score=2805.0 s hg17.chr13_random 89380 19 + 186858 CTTTTCTAACTGGAGAATT s panTro1.chr12 22792344 19 - 117159028 CTTTTCTAACTGGCGAATT s canFam1.chr26 10657699 19 - 41009621 TTTCTCCAAGTGGAAAACA a score=19699.0 s hg17.chr13_random 89399 150 + 186858 CCTGCCGGTGTCCCTGCTGCTTGGCCTCTTCTCCTCACGATGAATGGATAGAGGGAGGGAGGGAGGCTCTTAATTCTCCTGGAGT-CAG-CTCCAGACAGACAGGGTATTGGCACGCCAATTTCCAGCCTCAGTAGTAAAGGTCGACAT-GCT s panTro1.chr12 22792363 152 - 117159028 CCTGCCGGTGTCCCTGCTGCTTGGCCTCTTCTCCTCACGATGAATGGATAGAGGGAGGGAGGGAGGCTCTTAATTCTCCTGGAGTTCAGGCTCCAGACAGACAGGGTATTGGCATGCCAATTTCCAGCCTCAGTGGTAAAGGTCGA-ATCGCT s mm5.chr10 55183087 105 - 130633972 CTTACCAACCCCCCTCCTGC---------TCCCCCATTGATGACTGGGT----GGATGGGAGAAGTCTCCTAATTCTC--------TAA--TCTAAGTAG------------------GATTTACAGC------AGTTAAAGTCAATAT-GCT s canFam1.chr26 10657718 136 - 41009621 TCTGC-----TCCCATCTCC----CCACCACCTCCAATGACTAATGGG-----GGGTGAAAGGAGGCTCTTCATTCTACAGGGCA-CGGGCTCCAGACAGACCAGGTATTTATAGGCTAATTTCCTGC-CCTGTGCTAAGTGTCAACAT-GCT a score=14427.0 s hg17.chr13_random 89549 162 + 186858 AATCACCCTCCTCCATGAAACAGTGACAAAAATTAC---CTGAAGAAAGCCACAGC---------------------CAAGCT---------------CCAGGCCCCTG-CCCCACAAATCCCCTTCCCCATGCCTCTCTCA---AGGCGACCCTCATCCCTTGTAACCCCCTTGGTGAATCAAAGC-Cccctctactgggcctta s panTro1.chr12 22792515 162 - 117159028 AATCACCCTCCTCCCTGAAACAGTGACAAAAATTAC---CTGAAGAAAGCCACAGC---------------------CAAGCT---------------CCAGGCCCCTG-CCCCACAAATCCCCTTCCCCATGCCTCTCTCC---AGGCGACCCTCATCCCTTGTAACCCTCTTGGTGAATCAAAGA-CCCCTCCACTGGGCCTTA s mm5.chr10 55183395 102 - 130633972 GATTCTCCTACTTTTCGAAACAG-GGCAAGAATGCT---GTGATTAGGACCA-------------------------------------------------------------------------------------------------AGCCCTTGGGCCTTGTCACCCTGCCAGTGAGTCAAAGCTCCCCTCTTCTG---CTTA s canFam1.chr26 10657854 203 - 41009621 AATCACC---CCCTCTGTGTCTCTGACAGAAATAACAGTATGAAGAAATCCATAGCTGGGAAGGGAGAGGCCACGGGCAGGCTGCCTGGCCGAAGTTCCTCAGCCCCTGTCCCTACTTGCGGTCCCTCCAAGGCTCCTCTCCCCAAGCCCACCCTCATCTGCTGTGACCCTCAGAGATAGTTAAAGCCCACCCTCTCTGGGCCTTA a score=62313.0 s hg17.chr13_random 89711 364 + 186858 gccc-agctgttcctctgctaggaatcccttcctctctctgcctaacaaagttatctgcagcccagccgc-cacctcctccaagaagtcctcctggatcttcaggctgtattctagtgcttccctAGCCCTGGCTCTTGCCTACACCTGCATTTACCCCAACAGGGACTTGCTCTCCTGGACTGTGTGGCCTCTCTTGGTTTTGATATAAG-CAGGAGCTGTGGACCCACATGGCTAGTCACTGACC-----------------------CTCCTCCACCAGGAACTTCCTGCAGGC------------TCAGGCAAGACAGGAGGACCCCATGGCTCTGGGCTACAGCTCAGGGTTTCCACTGCAGAGTTCCTTACCCAGG-CCCTTGAGGTTACCCACTCA s panTro1.chr23 26624673 364 - 50034486 gccc-agctgttcctctgctaggaatcccttcctctctctgcctaacaaagttatctgcagcccagccgc-cacctcctccaagaagtcctcctggatcttcaggctgtattctagtgcttccctagccctggctcttgcctacacctgcATTTACCCCAACAGGGACTTGCTCTCCTGGACTGTGTGGCCTCTCTTGGTTTTGATATAAG-CAGGAGCTGTGGACCCACATGGCCAGTCACTGACC-----------------------CTCCTCCACCAGGAACTTCCTGCAGGC------------TCAGGCAAGACAGGAGGACCCCATAGCTCTGGGCTACAGCTCAGGGTTTCCACTGCAGAGTTCCTCACCCAGG-CCCCTGAGGTTACCCACTCA s mm5.chr10 55183497 313 - 130633972 GCCCAAGCTGTCC------------------TCTTTCTCTGCCTGAC--GGCCAT-TGC--CCTTGCGGCTCATTTCTTGCAGGTCATCCTTCCAGATCTGAAGCC-----TCTAGTTCTTCCTCAGCCCCAAGGGCTGCCCATACCTCTATTCACACTCGAAGGGA-----TTTCCTGTGCTGCTCAGCC-----------TGGTGTGAGCCAGGAGCTACGAATCCAAGGGAATCCATGCTGACC-----------------------CTTCCCCACCAAGCATTCCCTGAGGACCCAG-----AGGTCAGCCAAACTAGGCAGGGAGCAT--TTCAGAGCCA---CTCAGGGCTCCTTCTGTGGAGTCCTTCACTACAG-------------TCCACTCA s canFam1.chr26 10658057 368 - 41009621 GCCT----TTTCCCTCTACCAGGAATGT---TTTTCCTCTGTCCAGC---CTTCTCTGTAGCTCAGGCAC-AACCTCCTCTAGGAAGTCCTCCCAGATCTTCG-------TTTCAATGCTCCCGTACCCGGAGCTCTGGCCTAGGCCTGTATTTACCCCCTGA-GAACTTTCTCTCCTGGACTGTACTGGT-CTCTCGGATTTGCCCTAAC-CGAGAGCTGTGGATCCATGTGGCCTGTCACTGACTGCAGATGTATCCTGGACACCCCGCTCCCCCATCAGACGCTGCCTGAGGGCCCAGTGGCCGGGCCGGGCTGGACCAGAGGACCTGGGGCCTCGGAGCTCTGGCTCAGG--------------GTTCCTTGCCCAGGGCCCCTGTGGTTATGCACTCA a score=81562.0 s hg17.chr13_random 90075 141 + 186858 C-GGCCGCCTGGATGTCCTTCACAA---TCTGGGCCATGAGGCTGCCATTGTAGAAGGCCTGGGCACCCTCAATGGCCAGCGTCTCATAGGTGTCAGCCACCCGCGGCAGGGTCAGTCTCTCCCCCTCCCGAAGCACCTTTCTAT--- s panTro1.chr23 26625037 142 - 50034486 CCGGCCGCCTGGATGTCCTTCACAA---TCTGGGCCGTGAGGCTGCCGTTGTAGAAGGCCTGGGCACCCTCGATGGCCAGCGTCTCGTAGGTGTCAGCCAGCCGCGGCAGGGTCAGTCTCTCCCCCTCCCGAAGCACCTTTCTAT--- s mm5.chr10 55183810 142 - 130633972 CCAGCCTCCTGGATGTCTTTCACAA---TCTGGGCTGTGAGGCTCCCATTGTAGAAGGCCTTGGCGCCCTCCTGGGCCAGTATCTGCAATGTGTCAGCCAGCTTCGGCATAGTCACCGTCTCTCCTTCTTGAAGCACCTTCCCTT--- s canFam1.chr26 10658425 142 - 41009621 CCAGCTGCCTGGATGTCCTTGACAA---TCTGGGCTGTGAGGCTCCCATTGTAGAAGGCCTGGGCTCCCTCCGAGGCCAGCGTCTTGTACGTTTCGGCCAGCCGTGGCATGGTCACTATGTCCCCCTCCTGCAGCACCTTCCCGT--- s fr1.chrUn 289109346 141 - 349519338 -CTGCTGCCTGGATGTCCTCCACAATGCTCTGAGCCATGGAGCCTC---TGTAGAACACGTCGGGACCCTCCTCGGCGATTCTCTGGTATGTATCGGCCAACTTCGGGAACCGGACGACATCGTTTTCCTTCAGGATATTTTTCT--- s danRer1.chrNA 5089173 144 - 390413307 -CTGCATCTTGGATGTCCCTGACAAGGCTCT---CTGCAAGGGCTCCGCTGTAAAAGGCTTCAGGCCCCTGCTCTGCGATGGCCTCATACGTGTCGGCCAGTTTAGTAAAGGTGATGGTGTCGTTTTCCTGGAGGATGTTTCCGGTGG a score=10913.0 s hg17.chr13_random 90216 13 + 186858 CCCGGCAGAACAC s panTro1.chr12 22793183 13 - 117159028 CCCGGCAGAACAC s mm5.chr10 55183952 13 - 130633972 GGCGGCAGAACAC s canFam1.chr26 10658567 13 - 41009621 TGTGGCAAAACAC s fr1.chrUn 289109490 13 - 349519338 AGTCGCAGAACAC s danRer1.chrNA 5089317 13 - 390413307 AGTTGCAGAACAC a score=8949.0 s hg17.chr13_random 90229 19 + 186858 CTCACTGGGGCAGAGGGGG s panTro1.chr12 22793196 19 - 117159028 CTCACTGGGGCAGAGGGGG s mm5.chr10 55183965 19 - 130633972 CTCGCTGGGGCAGAGAGGA s canFam1.chr26 10658580 18 - 41009621 CTCACTGAGGCATAGAGG- s fr1.chrUn 289109503 19 - 349519338 AGAGCTGGAACACAGAGGG a score=3362.0 s hg17.chr13_random 90248 12 + 186858 CTCATGTGAGG-C s panTro1.chr12 22793215 12 - 117159028 CTCATGTGAGG-C s mm5.chr10 55183984 12 - 130633972 CTTGTGTAAGG-C s canFam1.chr26 10658598 13 - 41009621 CTCTGGTGAGGCC a score=24577.0 s hg17.chr13_random 90260 435 + 186858 AGCAGGTGGGGTGGACTTAGCTAGA--------CCACCCCCCACACC--TGCCCACA-----CAGGAGACCAGCACAAAGCAGGGG-CAGCGCCTGT-CACAGGTGGGTGGCCCTGTCACT-CAGCGCTCATCCTCCTAGTGTCC--CTTCCGGGAACATTCTAGTGTCCCTTGCCACTCAGGACACATGGCC--AGCCACAGTGGCCACTGGGACCTCACGCTCAGAATGTGTCCCCACGCTCAGAATGTGTCCCCACACGTGGTGGGAAGGGTCTGTATCT------CCTCATCCCATTATCAGCGCAGGGTCCTGAAGGCAGAGGGCCGCTCCACTGCTGCTACGGCCTGCAAGGTCCTTGGGCTGTGCCTGCCCTGCCTGTGTCAGGGGGCC-----GCACCCACAGACATGCCACAAGACAGGCTGCTG--CTCGATGACGGTCCGCTTGTTTT---CCAGGACTGCC s panTro1.chr12 22793227 417 - 117159028 AGCAGGTGGGGTGGACTTAGCTAGA--------CCAACCCCCACACC-CTGCCCACA-----CAGGAGACCAGCACAAAGCAGGGG-CAGCGCCTGT-CATGGGTGGGTGGCCCTGTCACT-CAGCGCTCGTCCTCCTAGTGTCC--CTTCCGGGAACCTCCTAGTGTCCCTTGCCACTCAGGACACATGGCC--AGCCACAGTGGCCACTGGGACC-------------------CCACGCTCAGAATGTGTCCTCACACGTGGTGGGAAGGGTCTGTATCT------CCTCATCCCATTATCAGCGCAGGGTCCTGAAGGCAGAGGGCCGCTCCACTGCTGCTACGGCCTGCAAGGTCCTTGGGCTGTGCCTGCCCTGCCTGTGTCAGGGGGCC-----GCACCCACAGACATACCACAAGACAGGCTGCTG--CTCGATGACGGTCCGCTTGTTTT---CCAGGGCTGCT s mm5.chr10 55183996 328 - 130633972 AGCAGGTGTGG-GAAGCCAATTACACCTCATACCCACCCCTCACCCTTTTGTCCTCAGGGTGCAGAAGA-------GAAACACGGG-TGGAATCTGTCCATGGGTGGGTTCTCCTCTTGCT-TGGGGTTC-------------------------------CCAGTGTCCCATCTTGCTCGG--------------GCCTCATTGTTCACTGGGGCC------TCTAAA-------TCAGGCTCTGACTGTGTTTCCAGATGCAGTAAGTG------------------------------------GCAGGCTCTCAAAAGCAGAGTGCAGCACCAC--------CAGCCC------TTTCCAGGATGGG------CTACATG-GACATAAGGCC---------------ACCTACCACAAGGCAGGGGTCTT--CTCAATGACGTCCCGTTTTTTGT---CCAGGGCTATT s canFam1.chr26 10658611 393 - 41009621 GGCAGGCGGGGTGGACTCAGCCAG---------CCACTCTCAACCCA----ACCACA-----CAGGAGATC----CAAGGCCAGTG--AGCGCCTGTCCACAGGTGGGTGGCCCTCATCCC-CG--------------GGTGTCCAGCCTCTG----CCTCCTAGAGCCCC-TGCCCCTCGGGATATATCGCCGGAACCCCAGG---CACTGGG--C-------------------TCAGGGGTGTGATGGGATCCCACACATGCTGGGAAGGGTTCTTATATCCCAGACCTCATCCCTGTATCAGCGCGGGTTCCTGAGAGCA------CCCTGCGAGACATTCACAGCCTGCAGGGACCTTGGGCC-TGTCTGCCCAGCCTGTGCCCCAGGGCAAGTCAATACCCGCAGACATACCACAGCTCAGTCTTCTG--CTCGATGATGGCCTGGTTCTTTT---TCAGGGCTGCT s fr1.chrUn 41974405 334 + 349519338 AAGGGGTGGGGGGGGGGCAACAGGG--------TAAGCACCTACCAG---------------TGGAAAACTGGGCTAAAGTTGTTTAAAGTACCTTT-AAACATTCGTTTATCATGAAGCTACGTCACTAATGCAACCCGTTTCC--GTATCTGGATTCT-CCAGTGAATC-CTCTCCTGGCTGGTTTTAACA--GAGCGCAGC---CGCCTGTCGC-------------------CCAAATTCA-----------CAGATGTCCTG-------CTTGTGTTT-----ACTTCACAC----------GCAG---CCCGAGCCGA------CGGCTCACAGCTGCTGCGTCAT---------------------------------ATTGAGGAGCT------------CTGACGTCTCTCACCATAAGTTTTTATCTTCGACGATGGTTCGCTTTTTCTCGGCCAAGGCCTTG a score=118589.0 s hg17.chr13_random 90695 147 + 186858 GCCAAGCCCTTGCCCACGGGGAAGCCCTGGCGGGCCAGCTGGATGCTGGGCTGGAAGAGGCGAGCCCAGGGCAGCCGCCCATGCCGCTGGTGTGCCAGCTCATAGCCTCGGATCTCCCCAGGCACTGCCACTGACAGCCCTCCTGGG s panTro1.chr12 22793644 147 - 117159028 GCCAAGCCCTTGCCCACGGGGAAGCCCTGGCGGGCCAGCTGGATGCTGGGCTGGAAGAGGCGAGCCCAGGGCAGCTGCCCATGCCGCTGGTGTGCCAGCTCATAGCCTCGGATCTCCCCAGGCACCGCCACCGACAGCCCTCCTGGT s mm5.chr10 55184324 147 - 130633972 GCCAAACCCTTGCCCACAGGGAAGCCGTGGCGAGCCAGCTGGATGCTGGGTTGGAAGAGGCGAGCCCAGGGGAGCCGGCCGTGTCGTTGGTGTGCCAGCTCATAACCACGGATTTCACCAGGGACAGCCACTGAAAGGCCACCTAGG s canFam1.chr26 10659004 147 - 41009621 GCCAAGCCCTTCCCCACAGGGAAGCCCTGGAGGGCCAGCTGGATGCTGGGCTGGAAGAGGCGGGCCCAGGGCAGCCGCCCGTGCCGCTGGTGGGCCAGCTCGTAGCCACGGAGCTCACCAGGAACCGCTACCGACAGCCCCCCTGCG s fr1.chrUn 289109678 147 - 349519338 GCCAAAGCTTTTCCTACCGGGACGCCGTTGCGAGCCAAAGCGATGCTAGGCTCAAACAGGTCCTTCCACGGCAGCCGGCCGTGCCTCTTGTGAGCCAGCTCGTAACCGCGGATCTCCCCGGGTATGGCTATAGACAATCCACCTGTC s danRer1.chrNA 5089807 147 - 390413307 GCCAGTGCGCGGCCGACAGGGAAACCATCTCTGGCCAGTTTAATGCTGGGTAAAAACAGCTCTTTCCATGGAAGTCTGCCATGCCGTCTATGGGCCATTTCATATCCTCGAATCTCTCCAGGAACAGCGATGGACAAACCACCTGTG a score=522.0 s hg17.chr13_random 90842 2 + 186858 GA s panTro1.chr12 22793791 2 - 117159028 GA s canFam1.chr26 10659153 2 - 41009621 GG s fr1.chrUn 289109825 2 - 349519338 CA s danRer1.chrNA 5089954 2 - 390413307 GA a score=1134.0 s hg17.chr13_random 90844 8 + 186858 GAGAGAGC s panTro1.chr12 22793793 8 - 117159028 GAGAGAGC s canFam1.chr26 10659155 8 - 41009621 GACAGGGA s fr1.chrUn 289109827 8 - 349519338 ATGAAAAC a score=6596.0 s hg17.chr13_random 90852 84 + 186858 CACAGTTAGTGACCCTGAGTGGGGGACATCGGGA-----TCTCTCGCAGGCAGCATCCCAG----------------------------------------------------------------------------------------GCACAGTCC-CTGACTCGTTTTACAGATG s panTro1.chr12 22793801 84 - 117159028 CACAGTTATTGACCCTGAGTGGGGGACATCGGGA-----TCTCTCGCAGGCAGCATCCCAG----------------------------------------------------------------------------------------GCACAGTCC-CTGACTCGTTTTACAGATG s canFam1.chr26 10659163 178 - 41009621 CACAGTGAGAGGCTCCAGCCCGGGGACGTCAGGAGGGATGCTGTCTCAGGCAATGACCCAGGAGGTGTGACACCACCGGAGCCCTTCTGACCCTGGGGCCACCTATTGCAGCCTCACTGGTTCCTGTGGGCTCTGTCCCTACCCTTCCTGCACAGGCCACTTGCTCCTCCCCCAGATA a score=9161.0 s hg17.chr13_random 90936 136 + 186858 GGGCAATGAGGCTTAGGAGGAAAGAttttttttttcttttttgagttggggtcttgccatcttgcccagcctgatctcgaactcctggattcaagcaatcctcccacctcagcctcctga------------------------------------------------------tttttattt--------------tattatt s panTro1.chr12 22793885 204 - 117159028 GGGCAATGAGGCTTAGGAGGAAAGAttttttttctcctttttgagttggcgtcttgccatcttgcccagcctgatctcgaactcctggattcaagcaatcctcccacctcagcctcctgagtagctgagattacaggcgtgaacaccacacccagcAGAAGGGGAtttttaatttttttatttattttttaatttaattttttt a score=20587.0 s hg17.chr13_random 91072 135 + 186858 ttttttaGGAGG----GGATGTTTAATTTTTTTTTTAAGAGGGGCTTAGCAGGTAGGAGTGTACATGGACCAGGGATGTCTGAGGAGGGCACAGGAGGG-GAAGCAGTAGCATGCG-GCTGGGTTTTGCTGTCCCAGGATG s panTro1.chr12 22794089 134 - 117159028 ttttttAGGAGG----GGATGTTTAA-TTTTTTTTTAAGAGGGGCTCAGCAGGTAGGAGTGTACATGGACCAGGGATGTCTGAGGAGGGCACAGGAGGG-GAAGCAGTAGCATGTG-GCTGGGTTTTGCTGTCCCAGGATG s canFam1.chr26 10659416 131 - 41009621 GCTTTTGGAAGGAAATGGAGGTGTCA-TTTCT---------GGACTCAGCAGGCAAGAGCGTAGATTGGTTAGGGACGCATGACAAAGCCACGGGAGGGAGAGGCGGTAGCTCCTGTGCTGGGTTCTACTGTCCCAGGACT a score=17964.0 s hg17.chr13_random 91207 125 + 186858 AGGTGTCTGTCTGTGCAGGTGCCTGCATGTCTAAAATCCTGTGCCAGG-------------------------------CCAGAC---------------CCCCTCCCATCTC-------------------ACTGACCACAAGGC---CTTATCCTGTAAGACTCATGGGCTCCACCAGAATGTGCCAAAAC s panTro1.chr12 22794223 125 - 117159028 AGGTATCTGTCTGTGCAGGTGCCTACATGTCTAAAATCCTGTGCCAGG-------------------------------CCAGAC---------------CCCCTCCCATCTC-------------------GCTGACCACAAGGC---CTTATCCTGTAAGACTCATGGGCTCCACCAGAATGTGCCAAAAC s mm5.chr10 55185206 168 - 130633972 GGGTGGCTGT--------GTACCTCCATTTGTGAAATCCTGTGTCAGGATTATGGTT-----------------ATCCACAAGACTTGGGGAAAACGGGACCCCTCCCGCCTCCCAAGTCTCAATCTGAGCTACCTACCCTCAGTCATTCTTGTTCCACACAATTCCTGAACTCCGCCAGACTATACCAAAGC s canFam1.chr26 10659547 153 - 41009621 ACATGTCTGCCTCTGCAGAGGCCATCAGGTTCGAAATCCTGTGCCAGGCCCACAGCTGCTCACTAAAACTGTGGGGAAGCCAGA----------------TCCCCACCATCTC--------------------CCCATCTGAGCCG---CTTTACCCACA-GGCTCAAAGGGTCCACCAGGACCCACCAAAGT a score=0.0 s hg17.chr13_random 91332 19 + 186858 AAGAGCAGATCCCACCCTG a score=1620.0 s hg17.chr13_random 91332 8 + 186858 AAGAGCAG s panTro1.chr12 22794348 8 - 117159028 AAGAGCAG s mm5.chr10 55185374 8 - 130633972 AAGGTCAG a score=1064.0 s hg17.chr13_random 91340 11 + 186858 ATCCCACCCTG s panTro1.chr12 22794356 11 - 117159028 ATCCCACCCTG a score=7853.0 s hg17.chr13_random 91351 50 + 186858 ACCCAGGTCAAGCACAGGCCACCTTCAAGACACAGCCAGCCCCAAGAAAG s panTro1.chr12 22794367 50 - 117159028 ACCCAGGTCAAGCACAGGCCACCTTCAAGACACAGCCAGCCCCAAGAAAG s canFam1.chr26 10659700 50 - 41009621 CCCCAGTGCAAGCCTGGGCCACCCCTGACACTAAGCCGGTGCCAGGGCAA a score=21107.0 s hg17.chr13_random 91401 103 + 186858 ---GGCTCCCTTCCTCTTTTCTACTGCCCCAGATAGGCAAGACT-GAGCCTTAACCTCCATCCTGTCCCCTCTCCCAGCCTCAGTTTCTCCATCCAACTATAAGGGt s panTro1.chr12 22794417 103 - 117159028 ---GGCTCCCTTCCTCTTTTCTACTGCCCCAGAGAGGCAAGACT-GAGCCTTAACCTCCATCCTGTCCCCTCTCCCAGCCTCAGTTTCTCCATCCAACTATAAGGGt s mm5.chr10 55185818 89 - 130633972 ---AGGCCCTTTCCTCCTATCTATTGACTT-GAGACCCAAGACT--AGCTT------------TGTTTTCTCTGTGTGCTTCGATTTCCCCATCTGACCTAATATGT s canFam1.chr26 10659750 105 - 41009621 GACCTCCACCATCCTCCTTTCTACTATCCC--AGAACAAGGACTTGAGCCCAAACCCCTGCCCTGTACCCTCTCTGGGCCTCAGTTTCCCCATGTGACCACAGAGAG a score=54707.0 s hg17.chr13_random 91504 605 + 186858 ttttgtttgtttgtctgttttgagacagggtctcactctgttgtcccagctggagtgcagtggtgcaatcatggctcactgcagccttggcttcccaggctcaagcgatcctcccacctcagcctctgaagtacctaagactacagacataccccactacatgtggc------------tttttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcacaatcttggctcactccaacctccacctcccgagttcaagtaattctcctgcctcagcctcccaagtagctgggattacaggcatgtacaaccatggcttgctaatttttgcatttttagcagagacggggtttcaccaggttggtcaagctggtcttgaactcctaatatcaggtgatccatcctcctcagcctctcagagttctgggattagaggcatgagccaccactcccagcctaattttttatttttattttttgtagagacaggggtcttgctacattgccaagactggtctcaaactctggcctcaagcaatcctcccacctcagcctcccaacatgctgggattacaggtgCACCCAGTCTATACGGGG s panTro1.chr12 22794520 617 - 117159028 ttttgtttgtttgtctgttttgagacaaggtctcactctgttgtcccagctggagtgaagtggtgcaatcatggctcacttcagccttggcttcccaggctcaagcgatcctcccacctcagcctctgaagtacctaagactacagacataccccactacgtgtggctttttttttttttttttttttttttttgagatggagtttcactcttgttgcccaggctggagtgcaatggcaaaatcttggctcactccaacctccacctcccgagttcaagtaattctcctgcctcagcctcccaagtagctgggattacaggcatgtacaaccatgccttgctaatttttgcatttttagtagagacggggtttcaccaggttggtcaggctggtcttgaactcctaatatcaggtgatccatcctcctcagcctctcagagttctgggattacaggcctgagccaccactcccagcctaattttttatttttattttttgtagagacaggggtcttgccacgttgccaagactggtctcaaactctggcctcaagcaatcctcccacctcagcctcccaacatgctgggattacaggtgCACCCAGTCTATAAGGGG a score=-12.0 s hg17.chr13_random 92109 5 + 186858 TTTTG-- s panTro1.chr12 22795137 5 - 117159028 TTTTG-- s canFam1.chr26 10659857 5 - 41009621 --TTGTC a score=10073.0 s hg17.chr13_random 92114 59 + 186858 CCTTCCAGTTCTGACTTTTGAGGA--------GGTCATTGGAAACAGACCCCTGGGCCTGCTTCCCC- s panTro1.chr12 22795142 59 - 117159028 CCTTCCAGTTCTGACTTTTGAGGA--------GGTCATTGGAAACAGACCCCTGGGCCTGCTTCCCC- s mm5.chr10 55185913 67 - 130633972 TTTTCCAGTTCACGTCTTTAAGGAGTGAATGGGTTCATTAGAAACAGATTCCTACCCTGGATTACCC- s canFam1.chr26 10659862 64 - 41009621 TCTTCCAGTT--GACCTTAGAGGAGCCCACAGTTCCACTAGACAC--ATCCGTGAACCCTGATCCCTA a score=26724.0 s hg17.chr13_random 92173 263 + 186858 CC-GAGCCCCACTGCCCATATGGACACTACAGACACTGACCCTTTGCCTAGAAAGGTACAACTATGGCCTCTGCCCCCAGGTACTCTCCTGCTCTTG-CGAGAGATGA-TGGGGCCATTTGG-------CTTGGCTTGGCGGCTG-CAGCTCTAAAACTGCCTCTCCCACCCTGAAGCCTGGCACAAGTTTCCAAGAGCTGGTGGTTTCAATTCCTAAAAGCTGCACATACATCCCGGAAGGTCTGACACCCAGCACATGATTCCTTCCACCTT s panTro1.chr12 22795201 264 - 117159028 CCTGAGCCCCACTGCCCATATGGACACTACAGACACTGACCCTTTGCCCAGAAAGGTACAACTATGGCCTCTGCCCCCAGGTATTCTCCTGCTCTTG-CGAGAGATGA-TGGGGCCATTTGG-------CTTGGCTTGGCGGCTG-CGGCTCTAGAACTGCCTCTCCCACCCTGAAGCCTGGCACAAGTTTCCAAGAGCTGGTGGTTTCAATTCCTAGAAGCTGCACATACATCCCGGAAGGTCTGACACCCAGCACATGATTCCTTCCACCTT s canFam1.chr26 10659926 202 - 41009621 --------CCCTTCCCCACG-GCACACTA---------------TGCCCGAAGCTGGACACTGATG---------CCCAGACACCTTATTGCTTTCATCCCAGGATGACCAGTGCCATTTTGGCTATTCCCAGACTAGGTGGCTTCCAGGTTCATAA----------CAACCTGAAATTGGGA--------CCAAGAGCC---------------------TTGTCTGCACATCTCAGAAAGTCTGACACCCAGCCCAGAACTCTTCCCATCTT a score=49656.0 s hg17.chr13_random 92436 572 + 186858 GTGGTTAGACAGAAGTTCTTTTTTGTtttgttttgtttttttgtttgtttgtttttgagatggagtcttgctctgtctcccagactgcagtgcagtggcatgatctcagctgactacaacctccgcctcccaggttcaagcgattctcctgcctcagcctcccgagtcgctgggattacaggcacaggccagcacgccaggctaatttttgtatttttagtacagatggggttttgccatgttggccaggctggtttcaaactcctgacctcaggtcatccacccacctcagccttccaaggtgctgggatgacaggcatgagccaccgtgcccagccAagacaggagaagttctaatctttgatagcagaccagggtgacgatgcttagc-aacagtattttgtatatttcaaagtaatgaagagaggactatggtgctaacacccagaaa-gaaaaatattcaaggtgacggagactccaaataccctgccttgatcattatacactctctgcatgtaacaagcactcacatgtacccataaatatagaaaatatcatgtatcaacatcaga s panTro1.chr12 22795465 559 - 117159028 GTAGTTAGACAGAAGTTC----TTGTtttgttttgtttttttgtttgtttgtttttgagatggagtcttgctctgtctcccagactgcagtgcagtggcatgatctcagctcactacaacctccgcctcccaggttcaagtgattctcctgcctcagcctcccaagtcgctgggattacaggcacaggccagcacgccaggctaatttttgtatttttagtacagatggggttttgccatgttggccaggctggtttcaaactcctgacctcagg-----------cctcagccttccaaggtgctgggatgacaggcatgagccaccgtgcccagccAagacaggagaagttctaatctttgatagcagaccagggtgacgatgcttagcaaacagtattttgtatatttcaaagtaacaaagagaggactatggtgctaacacccagaaatgaaaaatattcaaggtgacggagactccaaataccctgccttgatcattatacactctatgcatgtaacaagcactcacatgtacccataaatatagaaaatatcatgtatcaatatcaga a score=177402.0 s hg17.chr13_random 93008 1214 + 186858 aaaaaaaTCTTCTCCTGACCTCAGGCCAATCAGACTCTCATGCCACCACACTTGCCAAGTTCTCTGGTGACACCCACACTGCCAGACCCAGTGCCCCTCTCA-----GCTTTACTGGGCTCATCACTCTCCCTGAGAGCCGCCCCTGCATCCCAGC-ACCTGGCTCCACCCgagtatcccctgcctgccatcctagctcctactctcccctctgtctttgctctctctcctggtggtctgcttgacatctgagcttcagcctccatttatgcactgacaactcccaaattgacctgctggcctggactgctcctctgatcaccagacctgagtatctacctgcctgcttgaagaaagcatctcaaacttcaacgtgcccaaaaccgagctcctgagtgtctgctcaacctgcttcctgagaaccctgcctgcctccattagggtca---------ccccatccttccaggtacagacaaaagatc-aggggtccctggggactccctacacaagcatcacacccaccccatcc-tcaaatccacaggctcca-cttccaagtgtgtctgtccagcatcagccacttcccagcaccctct----ccacgaattactgcagtgacctccggacaggtcccc-------------acatgctccctgccccttacacagcaatccaaggggtc--------cataggccaga---tccatccccttccactcacacactccacgag---cccccacttccctcagacaggaagcagaggcttcaccataacctaagagatcccgcacaacctgggccattc---cccttggatcacttgctgcagcctccccAGCTCCCCACAGGGCTCTGTCCCTGCCATCACACCTGGATAG-----------------CAGACCAGGAGATAACTCCCCCGACCCCATCTCTGCCTCTGGGTCTTTGCTCAGATGTCCCCTTCCCTGACTAGGTCACCCTCCATAGAGTCCCAGATTTTGAGGCCCTCCAGGTCTGTTTTTCTACAGCCCGTAACATACCGGCACCTGCCTAGTTTCTTTTCCCACCTGGAGTGTCACAGATTTCATCTGCCGTCTTTGTTTTTCACCCCAGCTTCAGGAACAACAGCTGATTCTTTAAGACAATGCTCAATACATTCTAGTTAAATAAATGA-TTCTAAGCATCCACAAGGTGCCAAGCCTATGATTCCCGCATTCTCTTACCCTGAGCAACTTCATGTCTACAGATGCTGAGTTTCTCAATGAGTATTAAAA s panTro1.chr12 22796024 1213 - 117159028 aaaaaaaTCTTCTCCTGACCTCAGGCCAATCAGACTCTCATGCCACCACACTTGCCAAGTTCTCTGGTGACCCCCACACTGCCAGAcctagtgcccctctca-----gctttactgggctcatcactctccctgagagcctcccctgcatcccagc-acctgtctccacccaagtatcccccgtgtgccatcctagctcctactctcccctctgtctttgctctctctcctggtggtctgcttgacatctgagcttcagcctccatttatgcactgacaactcccaaattgacctgctggcctggactgctcctctgataaccagacctgagtatctacctgcctgctcgaagaaagcatctcaaacttcaacgtgcccaaaaccgagctcctgagtgtctgctcaacctgcttcctgagaaccctgcctgtctccattagggtcg---------ccccatccttccaggtacagacaaaagatc--ggggtccccggggactccctacacaagcatcacacccaacccatcc-tcaaatccacaggctcca-cttccaagtgtgtctgtccagcatcagccacttcccagcaccctct----ccacgaattactgcagtgacctccggacaggtcccc-------------acatgctccctgccccttacacagcaatccaaggggtc--------cataggccaga---tccatccccttccactcacacactccacgag---cccccacttccctcagacaggaagcagaggcttcatcataacctaagagatcccacacaacctgggccATTT---CCCTTGGGTCACTTGCTGCAGCCTCCCCAGCTCCCCACAGGGCTCTGTCCCTGCCATCACACCTGGATAG-----------------CAGACCAGGAGATAACTCCCCTGACCCCATCTCTGCCTCTGGGTCTTTGCTCAGATGTCCCCTTCCCTGACTAGGTCACCCTCCATAGAGTCCCAGATTTTGAGGCCCTCCAGGTCTGTTTTTCTACAGCCCGTAACACACCCGCACCTGCCTAGTTTCTTTTCCCACCTGGAGTGTCACAGATTTCATCTGCCATCTTTGTTTTTCACCCCAGCTTCAGGAACAACAGCTGATTCTTTAAGACAATGCTCAATACATTCTAGTTAAATAAATGA-TTCTAAGCATCCACAAGGTGCCAAGCCTATGATTCCTGCATTCTCTTACCCTGAGCAACTTCATGTCTACAGATGCTGAGTTTCTCAATGAGTATTAAAA s canFam1.chr26 10660128 1195 - 41009621 AAATAAATGCTGTCCTGACCTTGGGTCAATCAGG-TCTCACAGCACCctgctcgcaaaggtcaccagtgacctccacactgccagaccagggtcccctgtcaacatcaccttacctggcccatcaCTCCTCCC--GGGTTACCTCTGCATCCCACCTGCCAGGCTCTGCTAGAGtctcctctgcctacc-------------------------------ctcactctaccggt-gcctcccccagatcaggtcttcaggttccacttatttgctgacaact-ccgaatgtactctctggcctggcctgctcctctgatggccaaatctgaggatgcgcctgcccacgcaaaaaaggc--ctcaaactt-aatgcactcaaaactcaactccctactgtcacccaaacccactctcccacagcctcactgttctttcttaggggcaccactccccccccccacttcccgatgcagatcaacaactggagggtcatgcaggacacctggcatatgtgtcacacccaagctatcaggcaaatgcacgggctctaccttctaagtgtgttg----agtaccaaccacctcccaacaccctcttctctccctgattatcgtggtgacctcctgacgggccacctgatgggcatgcagcatactccctgacccttctgcagcagcccaaggagttttttcagatatagggtagaaaggccagccc------cacaaacaccctaggggacactgctacctctctgggacaagaggcagggtctttgcaatgaccgaggaggtgtgacaccaccggagcccttctgaccctggggccacctattgcag-ctcactggttctt--gcgggctctgtccctaccctt---cctgcatgggccacttgctcttcccccagacacctgcacagcccctctcaccccactccagcttctgagtctttgctcagacg-ccccctccctgagcaggctgttctcAGT-GAACCGCCCACCTTGTGGCTCTTC---------------CAGCCTCTGCTATCCTGACACC-ACATGGTTT--------GACTGg---gccacagattttgcctggtgcctttgtcttgtctcctggctttggaaacagtccttaacattttaaga-ggtgctcaataagtcctggttaaataaatgaCTTCCAAGCGTCCCTAAGGTGCTAAGACTAAGGGTTAAGCA----CTCACACTGAATGATTTCATTTCTACCCATTCAGAGTTTCCCAATGGATACGAGAA a score=28245.0 s hg17.chr13_random 94222 327 + 186858 ACAAATGAAAGATTGGTGgggcacagtggctcacgcctgtaattccagcactttgggaggccgaggcagggggatcacgaggtcaggagatcgagggaccagcctgggcaacatagtgaaaacccgcctctactaaaaaatacaa-aaaattagccgggcgtggtggcaggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaactcaggaggcagagcttgcagtgagccgagatcgcaccactgcactccaacctgggcgacagagtgagactctgtctcaaaaaaaaaaaaaaaaaaagaaaaaaaaa s panTro1.chr12 22797237 320 - 117159028 ACAAATGAAAGATTGGTGgggcacagtggctcacgcctgtaattccagcactttgggaggccgaggcagggggatcacaaggtcaggagatcgagggaccagcctgggcaacatattgaaaacccgtctctactaaaaaatacaataaaattagccaggtgtggtggcaggcgcctgtaatcccagctactcgggaggctgaggcaggagaatggcgtgaactcaggaggcagagcttgcagtgagccgagattgcaccactgcactccaacctgggcgacagagtgagactccgtctcaaaaaaaaaaaa--------gaaaaaaaa a score=14102.0 s hg17.chr13_random 94549 91 + 186858 TCAAAGATTGAGTATGTTGCAGAAGACTC-------------CAAAGGGCACCACCCAGGACCCCCACCTGAAGTCTAAGACCTGCTATGGTGAGTGTGTCCTG s panTro1.chr12 22797557 91 - 117159028 TCAAAGATTGAGTATGTTGCAGAAGACTC-------------CAAAGGGCACCACCCAGGACCCCCACCTGAAGTCTAAGACCTGCTATGGTGAGTGTGTCCTG s canFam1.chr26 10661324 104 - 41009621 TCAAAGATTCTGTATGTTGGAGAGGACTCCATGGGGGCTACTCACAGGACCCTGCCCAGGGCCCAAGCCCCAGGGTCAGAGCCTGCAGTTGGGGATCAGACCTG a score=54744.0 s hg17.chr13_random 94640 615 + 186858 CCCCTCCATCCTCCAACtttttttttttttttttgagacggagcttcgttcttgttgcccaggctggagtgcagtggcatgatctcggctcactgcaatctccacctcctgggttcaagcgattctcctgccttagcctcctgagtagctgggatattacaggcctgtgccaccacgcctgacttattgtacttttagtagagaatgggtttcactatgttggccaggctggtcttgaactcctgacctaggtgatccatctgcctcagcctcccaaagtgctgggattacaggcgtgagccTGTGAAAAAAAGGCCCAACC----------ttttttttttttttttgacagggtctcactttgttgcccaagctagagtgtagtggtataatcatggctcactgcagcctcaacctcctgggctcaagtgatcctcccaccttagcctcccaagtagctgggaccataagcacacaccgccatacctagctaatttttttttccatttttttgtagagatggagtcttgctatgttgtccaggcaggtctcctgggctcatgcactcctcctgacttggcctcctaaagtgctaggattagaggtgt-TGAGTTGTTGAGACCC s panTro1.chr12 22797648 624 - 117159028 CCCTTCCATCCTCCAAC-ttttttttttttttttgagacggagcttcgttcttgttgcccaggctggagtgcagtggcatgatctcagctcactgcaatctccacctcctgggttcaagcgattctcctgccttagcctcctgagtagctgggatattacaggcctgtgccaccatgcccgacttattgtacttttagtagagaaagggtttcactatgttggccaggctggtcttgaactcctgacctaggtgatccatctgcctcagcctcccaaagtgctgggattacaggcgtgagccTGTGAAAAAAAGGCCCAGCCttttttttttttttttttttttttttgacagggtctcactttgttgcccaagctagagtgtagtggtataatcatggctcactgcagcctcaacctcctgggctcaagtgatcctcccaccttagcctcccgagtagctgggaccataagcacacaccgccatacctagctaatttttttttcca-ttttttgtagagatggagtattgctatgttgtccaggcaggtctcctgagctcatgcgctcctcctgacttggcctcctaaagtgctaggattagaggcgtCTGAGTTGTTGAGAACC a score=72700.0 s hg17.chr13_random 95255 453 + 186858 TCCCATCCTCCAACTTTTATCTCACAATCTATTGTGCCTCCTTTGGGGTCAGACAGTGGC-TTCCTGGATGGACAGTGGCTTCCCTTCAGGTACCTGGGGAATTTGGGGGCCTCCT-CTCCACTTAAGACCAGATT-AGAAAAGAGAGACTCCA-CCTCACATTCTAGAGCGCCATCCCCACAAATGAACAAATGAGTGAATGGGATGCCTGTTGAAAAGGCAGGATATagacagcctgggatcaattttagcttcaccacctcccagctgtgtgacctcagctgatttgcatgacctgtctgagcctcagcatccccaccctgtaaaatgggaatccacacagca-tcccctag---cccaaaggagcagggagggttgtgagaagctcgtgggtgaaaagcacagagcagagcgtgggccccagtgagccctGGTCCATGAGGTCTGCTAGCATAATAA s panTro1.chr12 22798272 455 - 117159028 TCCCATCCTCCAACTTTTATCTCACAATCTATTGTGCCTCCTTTGGGGACAGACAGTGGC-TTCCTGGATGGACAGTGGCTTCCCTTCAGGTACCTGGGGAATTTGGGGGCCTCCTCCTCCACTTAAGACCAGATT-AGAAAAGAGAGACTCCACCCTCACATTCTAGAGCGCCATCCCCACAAATGAACAAATGAGTGAATGGGATGCCTGTTGAAAAGGCAGGATATagacagcctgggttcaattttagcttcaccacctcccagctgtgtgacctcagctgatttgcatgacctgtctgagcctcagcatccccaccctgtaaaatgggaatCCACACAGCA-TCCCCTAG---CCCAAAGGAGCAGGGAGGGTTGTGAGAGGCTCGTGGGTGAAAAGCACAGAGCAGAGCGTGGGCCCCAGTGAGCCCTGGTCCGTGAGGTCTGCTAGCATAATAA s canFam1.chr26 10661449 424 - 41009621 TCCTGCCCCCAACCTCCTATCCCGCAATC----------CCTTTGGGTCCTTGGAGCAGCACCCCCTGGTGGCCACTGCCTTCCCCTCAGCTGCATGGGGTGATTGAGGGCCTCTT-CTCTGCACAAGACCTTGTTAAAAAAAGACAGACTCT--CCTGCC--TCTTGAGAGCTATCACCACAAATGAACAACTAAAT-----Ggatgcctttgaaagaggcagggtttcaacagcccaggttcaattttagcctcagcaccacccagctttgtgacctcagttggtttgcatgacctctctgga---------------tctgtaaaatgag-atcaacacagtgcttccccagactccccagcatataaggaggatt-caaggggttcatcggtgaaaagggctgagcagagtgccagccccagtggccctcggtagatgagagctGTTGAAATAATAA a score=24212.0 s hg17.chr13_random 95708 124 + 186858 TTATTCTTTCCATGTGCT-GCACAGAATGGCCCC---GGAGGC--CTTAGCAGAAATAACAGAAGCT--CCCGGCCCTTTACCGT-GGTGATGATGGTCCTGACCACTCATTGTGGGAGGGTGCTATGGGGCC s panTro1.chr12 22798727 124 - 117159028 TTATTCTTTCCATGTGCT-GCACAGAGTGGCCCC---GGAGGC--CTTAGCAGAAATAACAGAAGCT--CCCAGCCCTTTACCGT-GGTGATGATGGTCCTGACCACTCATTGTGGGAGGGTGCTATGGGGCC s mm5.chr10 55186708 114 - 130633972 TTATTTTCTCCATGTGC--ACACACAAGTGCCTCAATGCAGGG--CTGAGAAGAAATAAAAGAA-CTGACCCCTCCTTTCACGAT-GGCGAT-------TTAACCATCTGTTATGGAAGGGTGTCCT------ s canFam1.chr26 10661873 124 - 41009621 TTATTCTCTCCCTGTAGTAGCACAGGATGGCTTT---GGAGGGATCTGAACAGAAATAACAGAAGCT--CCCATCTCTTTTCTCTCTGTAATGAAGGTCTGGACTGTTCA----AGACCTGTGTTGTGTGGCC a score=819.0 s hg17.chr13_random 95832 123 + 186858 AGGAAGGGATG--GGGGGT-------------GCTAGAACTGCCCCTGAACC-CTGACGGGAGCAGGCTCCTGTGGGCAAGGCCCCT---TCCCGGTGGCTCAG-CCAGCTCTGCACCCATGCCCCAA--GTCTGCAGCATGGCT s panTro1.chr12 22798851 124 - 117159028 AGGAAGGGATG-CGGGGGT-------------GCTAGAACTGCCCCTGAACC-CTGATGGGAGCAGGCTCCTGTGGGCAAGGCCACT---TCCCAGTGGCTCAG-CCAGCTCTGCATCCACGCCCCAA--GTCTGCAGCATGGCT s mm5.chr10 55186822 67 - 130633972 ---------------GGGT-------------ACCAGAGCTGTCCCCAGGCCTCGGACAGGTACACGTTCCCG-----AATGCTGCT---TC--------------------------------------ATGTG----ACGGCT s canFam1.chr26 10661997 115 - 41009621 AGGAGGGGATGGGAAGGGTGGGCATCAGCACAGCCAGAGCTTTCCCCAGTCC-CAGAT--------GCCCATG-----------CTT---TCCCAGCAGCTCAGCCCAGCTCTGTACTCACACCCTGA--GCCTG-----CACCT s fr1.chrUn 289109896 99 - 349519338 AAGAGGTGATG----AGGT----------------AGAACTTCCCCTTCAGC--------GAGGAAACCTCAG-----ACAGACCCTGGGTCTAGGTGGGTG---CCCGCT----------GCCCTGACTGGCTGGATTATCTCC a score=60078.0 s hg17.chr13_random 95955 92 + 186858 TACCCTTCTGGGACTGCTCCAAGCTGTT---GAACATGCTGGCAAAGGCCAGCCTGGGGGCCACCTCGCGGGCATTGATGACCTCAGCTTTTCCT s panTro1.chr12 22798975 92 - 117159028 TACCCTTCTGGGACTGCTCCGAGCTGTT---GAACGTGCTGGCAAAGGCCAGCCTGGGGGCCACCTCGTGGGCATTGATGACCTCAGCTTTTCCT s mm5.chr10 55186889 92 - 130633972 TACCTTCTTCAGAGTCCTTGGAGTTGTT---GAACATGGTGGTATTGGCCAACCTGGGAGCTACCTCACGGGCATTGATAACCTCAACTTTTCCT s canFam1.chr26 10662112 92 - 41009621 CACCTGTCTGTGACTGCTCCGAGCTGTT---GAACATGTTGTCAGAGGCCAGCCCTGGGGCCACCTCGCGGGCATTGATGATCTCAACTTTTCCT s fr1.chrUn 289109995 95 - 349519338 TACCTGTACGAGAAAGCTTTGTGCTGTTTCCAAACATTTTTTCAGTGGCGTTCAGCGGTGCGGTTTCCCTGGCGTCAATGGTCTCCACCCTTTTT s danRer1.chrNA 5093983 95 - 390413307 TACCTTTCTGGGAAAGCTCTGTACTATTTCCAAACATGTCTCTGGTGGCGTTAGCAGGGGCTGTCTCACGAGCATTGATGGTTTCAGCTTTTCCT a score=11655.0 s hg17.chr13_random 96047 138 + 186858 -AGAAGGA-GAAGCA-GGTAGGCAGGCCCACCCA-CCCAAACCCTTTATGCCACGTGAGCCTGGGGGCCACCCAGCT-GTGCCTCGGC-CCAACCCACAACCCCTGCCCCTCTCCCTCTCCTCTTCCGAGGCATTCATGAGAGG s panTro1.chr12 22799067 139 - 117159028 -AGAAGGA-GAAGCAGGGTAGGCAGGCCCACCCA-CCCAAACCCTTTATGCCACGTGAGCCTGGGGGCCACCCAGCT-GTGCCTCGGC-CCAACCCACAACCCCTGCCCCTCTCCCTCTCCTCTTCCGAGGCACTCATGAGTGG s mm5.chr10 55186981 139 - 130633972 -ATAAAAAGGAAACA-TGTTGGCAGGCCAGGATATCCCCAACCTCTCCTATCAAGGGAGCCCAGGAGACACCCAACTCATTCTGATGG-GAGAGGGATAGCCTGAGCCACTCACCCACCCGAC--CATGCACACACACCTGTGG s canFam1.chr26 10662204 141 - 41009621 -GGAAGGA-GAAGCA-GGTGGGAAGTCTGAATCAACCCCAGTCCCTCACCCCGGGTGAGCTCAGGGGCCACCCAGCTCAAGTCTAGCCTGAGACACACAGCCCCTGCCACTCACCTCCCACTCCCCATGGGCACTCACGTGTGG s fr1.chrUn 289110090 69 - 349519338 GAGAAGCA-GAAATG-GG---------------A--------------------------------------CAGAT-GGACCGTGGT-GTCTTTTACAAGTTAT------------------TAAAAGGTTTCTTACCAGTGG a score=108897.0 s hg17.chr13_random 96185 128 + 186858 TGCTGTTGTAGATGGTGAGGAAGAG-GCCACCCCCGAT-GCTCATGCTGTGGGCATTCATGAGCCCCACACACAACAGGGCTGCAATGGCTGCATCCACCGCAGAGCCACCATCCCGCAGTGTGTCCCTG s panTro1.chr12 22799206 128 - 117159028 TGCTGTTGTAGATGGTGAGGAAGAG-GCCACCCCCAAT-GCTCATGCTGTGGGCATTAATGAGCCCCACACACAACAGGGCTGCAATGGCTGCATCCACCACAGAGCCACCGTCCCGCAGTGCGTCCCTG s mm5.chr10 55187120 128 - 130633972 TGCTGTTGTAGATGGTGAAGAACAG-GCCGCCCCCGAT-GCCCATACTGTGGGCATTCATGAGCCCCATACACAGCAGGCTTGCGATGGCTGCATCCACCACGGAACCACCTTCCTGTAGGATATCCCTA s canFam1.chr26 10662345 128 - 41009621 TGCTGTTGTAGATGGTGAGGAACAG-GCCGCCCCCGAT-GCCCATGCTGTGGACATTCAGGAGTCCCACGCACAGCAGGGCTGCGATAGCAGCATCCACAGCCGAGCCGCCGTCCTCCAGCACATCCCTA s fr1.chrUn 289110159 130 - 349519338 AAGCGTTATAGATGACAAAAAAGAGTTCCACCTCCGATGGCCCATGCTGTGGGCGTTAAAGAGGCTGATGCAAAGCAACGTAGCAATGGCCGCATCCACAGCAGAGCCGTTCCTTTTCAGCATATCCCTG s danRer1.chrNA 5095958 128 - 390413307 TGGCATCATAAATAGTGAAGAAAAG-GCCTCCTCCGAT-GCCCATGCTGTGGGCATTCATCAGTCCCGCACACAGCAGCGCAGCGATGGCAGAATCTACAGCCGATCCTCCTTTCTTCAAGACGTCCCTG a score=530.0 s hg17.chr13_random 96313 32 + 186858 CCATGTGGCACATAAAGGCACGAGAAC-CTGCA s panTro1.chr12 22799334 32 - 117159028 CCATGTGGCACATAAAGGCATGAGAAC-CTGCA s mm5.chr10 55187248 31 - 130633972 CAA-GCAGCCCAAAGGAAGGCAAGAAC-CTGAG s canFam1.chr26 10662473 32 - 41009621 CCC-ACAGCATTTGGTGGGGAGTGAGCACTCTA s danRer1.chrNA 5096086 29 - 390413307 -CA-GACACACAGACAGAACTGAGA-C-CTGAA a score=12262.0 s hg17.chr13_random 96345 69 + 186858 GGCTTCC------------------ACCCTGGCACCGCATACATACCCTGCT--GCCTACCTGCCCAAAGGAGGATGGAAGAGAAGTCC s panTro1.chr12 22799366 69 - 117159028 GGCTTCC------------------ACCCTGGCCCCTCATACACACCCTGCT--GCCCACCTGCCCAAAGGAGGATGGAAGAGAAGTCC s mm5.chr10 55187279 66 - 130633972 GACTCTC------------------AGGACGACCCTGC-CCCACACCCTG----GCCACCCTGCCCAAAAAAAGACAGAAGCGAGACCC s canFam1.chr26 10662505 82 - 41009621 GGCTCCCCAGTCCCCCAACATGTGTACCCTGCCACC-CACCTCCACCCTGTCTGGCCACCTTGCCCAAAG------GGAAGAGGAGCCC a score=2283.0 s hg17.chr13_random 96414 16 + 186858 ATTCGAGTTTTGGGGt s panTro1.chr12 22799435 16 - 117159028 ATTCGAGTTTTGGGGt s canFam1.chr26 10662587 13 - 41009621 AT---AGTTTTCAGGT a score=78804.0 s hg17.chr13_random 96430 876 + 186858 ttttgtttttagtttctttcttttttgttttgagatggagtcttgctctattgccaggctggagtgtagtggcacgatctcagctcactgcaacctctgcctctcgggttcaagccattctcctgcctcagcctcctgagtagctgggactacaggtgcatgccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggatgatctctatctcttgacctcatgatctgcctgccttggcctc------ttttatttttttttttttgagacaaagtctctctttgttgctcaggctggagtgcagtggtgtgatctcagatcactgcagcctcagtctcctgggctcaattgaccctcccatctcagcctcccaagtagctgggactgtggccacatgccaccatgcccagccaattttgtttgtttgtgtattttgtagagatggggtttcatcatgttgcccaggctggtcaagaactcctgtgctcaagtaatccacccaccttggcctcccaaagtgctggtattacaggcatgagccactgtgcccagcctttgttttatgagacagggtctcactttgtcacccaggatgaagtacagtggcacagtcttggctcaatgcagctttgacctcctgggctcaagcaatgctcccacttcagtctcctgagtagctgggactacaggtaagaaccaccacactgggcaattttttgtcttttttgtagagatagggtctttctatgttgcccaggctggtctcgaactcatggtctaaagcaatcctatcgcctcaacctcccaaagtgctgggattacagTTTCTTCtttttcttttctttcttttttttt s panTro1.chr12 22799451 879 - 117159028 ttttgtttttagtttctttcttttttgttttgagatggagtcttgctctattgccaggctggagtgcagtggcacgatctcagctcactgcaacctctgcctcccgggttcaagccattctcctgcctcagcctcctgagtagctgggactacaggtgcatgccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccatgttggccaggatggtctctatctcttgacctcatgatccgcctgccttggcctcttttttttttttttttttttttttgagacaaagtctctctttgttgctcaggctggagtgcagtggtgtgatctcagatcactgcagcctcagtctcctgggctcaactgaccctcccatctcagcctcccaagtagctgggactatgggcacatgccaccatgcccagccaattttgtttgtttgtgtattttgtagagatggggtttcgtcatgttgcccaggctggtcaagaactcctgtgctgaagtaatccacccaccttggcctcccaaagtgctggtattacaggtatgagccactgtgtccagcctttgttttatgagacagggtctcactttgtcacccaggatgaagtgcagtggcacagtcttggctcaatgcagctttgacctcctgggctcaagcaatcctcccacttcagtctcctgagtagctgggactacaggtaagaaccaccacaccgggcaatttttggtcttttttgtagagatagggtctttctatgttgcccaggctggtctcgaactcatggtataaagcaatcctatcgcctcaacctcccaaggtgctgggattacaggtgCTTCCTTTTCTT---TTTCTTTTTTTTT a score=26025.0 s hg17.chr13_random 97306 290 + 186858 ttttctgagacagagtttcactcagttg-cccaggctggagtgcagtggcatgatcttagctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcc-cctgagtagctgggattacaggcgcacaccaccatgccccgctaactttttatatttttagtagggacagagtgcaccatgttggccaggctagtctcaaactcctgacctcgggtggtctgcccgcctcaaccccccaaagtgctgggattacaggtgtggaccaccttgcccagACAGT s panTro1.chr23 26632598 292 - 50034486 ttttctgagacggagtttcactaagttgccccaggctggagtgcagtggcatgatcttagctcactgcaacctctgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgcacaccaccatgcccggctaactttttatatttttagtagggacagagtgcaccatgttggccaggctggtctcgaactcctgacctcgggtggtctgcccgcctcaacctcccaaagtgctgggattacaggtgtggaccaccttgcccagACAGT a score=14232.0 s hg17.chr13_random 97596 79 + 186858 TTCCTCTTTATCAAGCAAACAAATGTACATGACTTTTATAATTGGGACAAAA-AGGGAAATTGCTATACTTTATTAATAA s panTro1.chr23 26632890 79 - 50034486 TTCCTCTTTATCAAGCAAACAAATGTACATGACTTTTATAATTGGGACAAAC-AGGGAAATGGCTATACTTTATTAATAA s canFam1.chr26 10662635 79 - 41009621 TTCTTCCTTTTCAAGCAAACAGATGTACCCGACTTTTATAATAGAAAGAAAATTGGAAAATTGTTAC-TTTTGTTAGTAA a score=-31.0 s hg17.chr13_random 97675 1 + 186858 C s canFam1.chr26 10662714 1 - 41009621 T a score=1774.0 s hg17.chr13_random 97675 15 + 186858 CATTTTTTTTTCCCT s panTro1.chr23 26632969 15 - 50034486 CATTCTTTCCTCCTC s mm5.chr10 55187764 15 - 130633972 GGTTTTCTCTTCTCT a score=12836.0 s hg17.chr13_random 97690 153 + 186858 GCTAGAGATggtggcttaca---cctgtaatctcagcactttgggaggccaaggtggaggatcacttgaggccaggagttcaagaccagcctgggcaatagagtgagaccgtctctacaaaacagtctttttaaattagtcaggtgtgatgcacgc s panTro1.chr23 26632984 156 - 50034486 GCCGTAGATGGCGGCTTATAGGTcctgtaatctcagcactttgggaggccaaggtggaggatcacttgaggccaggagttcaagaccagcctgggcaatagagtgagaccatctctagaaaacagtcttttttaattagtcaggtgtgatgcacgc a score=13408.0 s hg17.chr13_random 97843 143 + 186858 ctgtagtcctagctactcagggggctgaggtgggaggatcgcttgagcccaagagttcaaggctgcagtgagctatgatcatgccactgcactccagcctgggtgacagaacaagaccctgtctcaaaatatgaaaaaCATAA s panTro1.chr12 22800644 143 - 117159028 ctgtagtcctagctactcagggggctgaggtgggaggatcgcttaagcccaagagttcaaggctgcagtgagctatgatcatgccactgcattccagcctgggtgacagaacaagaccctgtctcaaaatatgaaaaaCATAA a score=17086.0 s hg17.chr13_random 97986 82 + 186858 TATTTTTTCTGTTTAAGTCTTTAGAAGGGAACTGATCTTTATATATAACATGAGATAAGAGCCCAAAATAGAATAAAACAGT s panTro1.chr12 22800787 82 - 117159028 TATTTTTTCTGTTTAAGTCTTTAGAAGGGAACTGATCTTTATATATAACATGAGATAAGAGTCTAAAATAGAATAAAACAGT s canFam1.chr26 10662715 82 - 41009621 TTTTTTTTCTGTTTAAGTCTCTAAGTGGGAACTGATCTTTGTGTATAATGGGAGGCAGAGCTCTAAAATAGCATAAAACAGC a score=37774.0 s hg17.chr13_random 98068 426 + 186858 AGAAgccaggcaccatggctcacacctgtaatcccagcactttaggaagctgaggcgggaggatcacttaaatccaagagtttgaggctgcagtgggctatgatcgctcccctatactccagcctgggtgacagagtaacactccaccttaaaaaaagaataaGCCCTTCATGTCCCTGTTTGGGCAACAGCGTTCCTTCgggggaggggggagggatggcattgggagatatacctaatgctaaatgacgagttggtgggtgcagcacaccaacatggcacatgtgtacatatgtaacaaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataaaataaAATAAAAAAAAGAAAGAAAGAAATTGTCTCCTAACCAAAAAATA----AAAAGAAAAGAATAagccgggcatg s panTro1.chr12 22800869 426 - 117159028 AGAAgccaggcaccatggctcacacctgtaatcccagcactttaggaagctgaggcgggaggatcacttaaacccaagagtttgaggctgcagtgggctatgatcgctcccctatactccagcctgggtgacagagtaagactccaccttaaaaaaagaaTAAGCCCTTCATGTCCCTGTTTGGGCAACAGCGTTCCTtggggggaggggggagggatggcattgggagatatacctaatgctaaatgacgagttggtgggtgcagcacaccaacatggcacatgtgtacaaatgtaacaaacctgcatattgtgcacatataccctaaaacttaaagtataataataataaaaTAAAATAAAAA----AAAGAAAGAAATTGTCTCCTAACCAAAAAAAAAAAGAAAAGAAAAGAATAagccgggcatg a score=60804.0 s hg17.chr13_random 98494 691 + 186858 gtggctcacacctgtaatcccaacactttgggaggcccaggtgggtggattacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaacaccataattaggccaggcacagtggctcacacctgtaatcccagcactttgagaggcagaggtgggaggatcacaaggtcaggagttcaagaccagcctggccaacatagcaaaaccctgtctctactaaagatacaaaaattagctaggcatggtggcacatgcctgtagtctcagctactgtggaggctgaggcaggagaatcacttaaacctgggagggggaggctgcagtaagccaagattgcaccactgccctccagcctgggtaacagagcaatactctgtctcGGAAacaaacacacacacacacacacacacacacacacaaatttgttgggcgtggtggcacacacctgtaatcccagctacttgggaggcttaggcatgagaatcgcttgaacttgggaggcggaggttgcagttaactgagattgcatcactgcactccagcctggcaacagagcaaaactccatctctaaatagatagatagatagatagatagatagatagatagatagatagatagataggaagaaataagtaaaaaTAGCAACCAAACAACAAAACAGTGG s panTro1.chr12 22801431 673 - 117159028 gtggctcacacctgtaatcccaacactttcggaggcccaggtgggtggattacctgaggtcaggagttcgagaccagcctgaccaacatggtgaaaccccatctctactaaaaacaccataattaggccaggcgcagtggctcacacctgtaatcccagcactttgagaggcagaggtgggaggatcacaaggtcaggagttcaagaccagcctggccaacatagcaaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggcacatgcctgtagtctcagctactgtggaggctgaggcaggagaatcacttgaacctgggagggggaggctgcagtaagccaagattgcaccactgccctccagcttgggtaacagagcgatactatctctcagaaaca----------cacacacacacacacacacacaaatttgttgggtgtggtggcacacgcctgtaatcccagctacttgggaggcttaggcatgagaatcgcttgaacttgggaggcggaggttgcagttaactgagattgcaccactgcactccagcctggcaacagagcaaaactccatctctagatagatagatagatagatagatagatagatagatagatagatagatagata--------TAAGTAAAAATAGCAACCAAACAACAAAACAGTGG a score=584.0 s hg17.chr13_random 99185 3 + 186858 AGT s panTro1.chr12 22802104 3 - 117159028 AGT s canFam1.chr26 10662797 3 - 41009621 AAT a score=9726.0 s hg17.chr13_random 99188 38 + 186858 TTATCCAAAGAGACAGAGACTCTTAGAACTGAGAAAAG s panTro1.chr12 22802107 38 - 117159028 TTATCCAAAGAGACAGAGACTCTTAGAACTGAGAAAAG s mm5.chr10 55188601 27 - 130633972 TTTTTCAGAGAGACA-----------CGCTGAAAAGAG s canFam1.chr26 10662800 38 - 41009621 TTATCCAAAGACACAAATATCCTTCAGTCTGAGAAAAG a score=8762.0 s hg17.chr13_random 99226 51 + 186858 GGGCC-TGTTTGGCTCTAG-AGACCCACACCCTGCTCTCGG--AGTCACCGTCCC s panTro1.chr12 22802145 53 - 117159028 GGGCCCTGTTTGGCTCTAGGAGACCCACACCCTGCTCTCGG--AGTCACCGTCCC s mm5.chr10 55188628 21 - 130633972 GGACT-------------------------------CTCAG---GTCACCATCCC s rn3.chr2 61732974 53 - 258222147 GGGCC-TGTTGGACTCTAT-GGGCCTGTCCCCTGCTCCCGAGAGCTCACCTGCCC s canFam1.chr26 10662838 53 - 41009621 GGACCCAGCTGGGCACCAGGAAACCCGCATCCTGATTTTGG--AGTCAGTATCCC a score=12269.0 s hg17.chr13_random 99277 118 + 186858 CTTCC--------CAAAGGCTACTGAGGGAGTCCAAGCG--------------------------------AAGCttacat----gtggggaaactgagt-------------------ctcagaggggtgaac----gtattgctcaggtccacttgcc---cagttTTCAGGGCCCATGTCCCATG s panTro1.chr12 22802198 118 - 117159028 CTTCC--------CAAAGGCTACTGAGAGAGTCCAAGCA--------------------------------AAGCttacat----gtggggaaactgagt-------------------ctcagaggggtgaag----gtattgctcaggtccacTTGCC---CATTTTTCAGGACCCATGTCCCATG s mm5.chr10 55188649 130 - 130633972 TTTTC--CCTAGACAGAGGCTAGCAAGAGACTACAGGGA--------------------------------AAG-----------GACGGGCAGCTCACTGGACACGATTTACATCCACTTTACAGATGGGAACCTGAGTTATGCCCGAGCTCACTGGCC-------TTCCAGG------GTGCCTTG s canFam1.chr26 10662891 158 - 41009621 CTTCTGCCCTGACCAGAGGCTGCT-AGAAGTTCCAAGAAGCTCCATGTGCGTCAGACACCCCTGGTCTGGGAAGCTCACAtacaggtggggaaaccgagt-------------------ctcagagggatgata----gtcttgcccaGATCCATTTGCTGTGCTCCTCCTGTG------TTCCTATG a score=1708.0 s hg17.chr13_random 99395 13 + 186858 CCCT----GCCCCGCTC s panTro1.chr12 22802316 13 - 117159028 CCCT----GCCCTGCTC s mm5.chr10 55188779 17 - 130633972 CCCTAGCAGACCCACGT s canFam1.chr26 10663049 12 - 41009621 CTCT----G-CCCACTC s fr1.chrUn 289110353 13 - 349519338 CCAG----GTTCCTCTC a score=72662.0 s hg17.chr13_random 99408 174 + 186858 ACCTCCCAATCTCCGAGCACTGCTTGGCATCTGCAGCCACGGCAGCCCTGGTGTACACATGGTT----------GTCAGGTTC-------CTTGGAGGCT-------------------GAGGGCAGCCAGAGACAGAGATTGACAAT---GACCAGCACCAGGACCACGGCCAGCAGGCCCAGCACCACTAACTTCTTCTTCATGGCTCTGC s panTro1.chr12 22802329 174 - 117159028 ACCTCCCAATCTCCGAGCACTGCTTGGCATCCGCAGCCACGGCAGCCCTGGTGTACACATGGTT----------GTCAGGTTC-------CTTGGAGGCT-------------------GAGAGCAGTCAGAGACAGAGGCCGACAAT---GACCAGCACCAGGACCACGGCCAGCAGGCCCAGCACCACTAACTTCTTCTTCATGGCTCTGC s mm5.chr10 55188796 171 - 130633972 ACCGTCCAATCTCTGAGCAGCGCTTGGCGTCGGTGGCCACCGCCGCCCTGGAGTACACGTG-------------GTCGGGCTT-------CCCAGAGGTG-------------------TAGGGCAACCAGATACAGAGGCCGATGAT---GACAAATACCAGAACCACAGCCACCAGGCCCAGCACCAGAAACCGATTCTTCATGGCTCTGC s canFam1.chr26 10663061 174 - 41009621 ACCTCCCAATCTCCGAGCAATGCTTGGCGTCTGTGGCCACGGCTGCCCTGGGATAGACATGGTT----------GTTTGA----------CTTGGAGGCT-------------------GAGGGCAGCCAAAGGCATAGGCTGATGATGAGGATGAGCACTATGGCCACACCCACCAGGGTCACCACCACGTACAACTTCCTCATGGCTCCCC s fr1.chrUn 289110366 183 - 349519338 ACCTGCCCACTTCTGAACACGTCCCAGCATCTGACGCCACAGCAGCCTTTGAGTAGAAGTGGTCCAAGGAGGAAGGCAGGTTTTTGG--ACCCCAAACCC-------------------ATGAACACCCCCAGGAACAGGCTGACTGC---AGCCATCAGGAGGACCAC------CAGACCAGCAATCAGGGACTTCGCAACCATTTTTCTGC s danRer1.chrNA 5100065 183 - 390413307 ACCTGCCGATCTCTGAACATGTTCCAGCATCTGTGGCCACCGCTGCCTTGAAAAA-------------------GCCAGATTCTGGATCAGACGAAGCCTTTTTACCCTGCACTGAAAAGAAAACGGCCAGAAACGTC--CCGACGGC---AGCCAGCAGCAGCAGAAC------AAGACCCGCAACTGTCGACTTCTGCACCATTTTCCTGC a score=-1252.0 s hg17.chr13_random 99582 8 + 186858 --TGCTCCCA s panTro1.chr12 22802503 8 - 117159028 --TGCTCCCA s mm5.chr10 55188967 6 - 130633972 --TGCCCA-- s canFam1.chr26 10663235 8 - 41009621 --TGCTGCCT s danRer1.chrNA 5100248 8 - 390413307 AACATTCA-- a score=174620.0 s hg17.chr13_random 99590 918 + 186858 CGGGGTA-----AGGAG----------------CAGGGTCAGG-----------CCCAGCC-TCAGACATTC---CCTGGCCCCT--CCCCAACAGGGCACAGTCTAAAGTCGGGCCTCAGAAACACAAGGCCTGTgtctccttcctgcttcccagaatacgtacaggctgtccggcccccagacctttgtgcaggccatgccctctgccagaagctctGGGCCTCATCTCTACCCTCCCAAATCCTCCCTGCTTGTCTTCAGAGCCCA-TCCTGGT-AAGAACCCCATCTCCAGCAGTGGCCCTTCCTGGGAGCCC--CCAGATTTCCACAC--CCCTCTTTCTGCAGGGCCTGGCCTACCTCCTCAC---AGTGGCTGAGCCTCCACTG-CTTAGGGAGAAGCTCCAGCAGGGATGGGCCTGGCCTGGTTTCTCCTGTGTCCCCCACCCCAGCCTAGAGCCTGGCACTGTCCAGGAGTCCTCTGAA--GACCCTCCACCCCACCTGGAGCATGGGGTTTAGCTTCCATAGT--GCCCACAATC---AGAGTGCCCCA--------------------CAGATTCACTGCCACGGGGCCAGGACTTACCGTCCAGCAGCAGACGGGGGCCCCAAGCCTTGCCTGGGGTGTTGGCCACGAAAGACAGGAGGATTTGGTGGAAACAGCTGAGGAAATAACTGGGGTCTCCCT-CACACTCTGCTGAAGCCTGTAGCCACAGAATCTTCTTC--AGAGACTCTCTGATCAGGCAGCCTTCTCGTTCTCCTG---------AAGGTCAAGGGAGGTTACCTGAAGCACGCACAGCCCAGACCTTTCTGGGGGACTCCGGGT---TACCTCCCTCTGCCTCTAGCTGGTTTCTCTGTCTCCAGTTGAACTCTGGAGGCAAA---GAGGCTGTCAGTAACACATTTGTTTCCATGAATTCTCTCAGCATTTCTCCCAGGCACAGCTCAAAGAGGGTTTTGCACGGAGCAGGGCAGG s panTro1.chr12 22802511 918 - 117159028 TGGGGTA-----AGGAG----------------CAGGGTCAGG-----------CCCAGCC-TCAGACATTC---CCTGGCCCCT--CCCCAACAGGGCACAGTCTAAAGTCGGGCCTCAGAAACACAAGGCCTGTGTCTCCTTCCCGCTTCCCAGAATACGTGCAGGCTGTCCGGCCCCCAGACCTTTGCGCAGGCCATGCCCTCTGCCAGAAGCTCTGGGCCTCATCTCTGCCCTCCCAAATCCTCCCTGCTTATCTTCAGAGCCCA-TCCTGGT-AAGAACCCCATCTCCAGCAGCGGCCCTTCCTGGGAGCCC--CCAGATTTCCACAC--CCCTCTTTCTGCAGGGCCTTGCCTACCTCCTCAC---AGTGGCTGAGCCTCCACTG-CTTAGGGAGAAGCTCCAGTAGGGATGGGCCTGGCCTGGTTTCTCCTGTGTCCCCCACCTCAGCCTAGAGCCTGGCACTGTCCAGGAGTCCTCTGAA--GGCCCTCCACCCCACCTGGAGCATGGGGTTTAGCTTCCATAGT--GCCCACAATC---AGAGCACCCCA--------------------CAGATTCACTGCCACGGGGCCAGGACTTACTGTCCAGCAGCAGACGGGGGCCCCAAGCCTTGCCTGGGGTGGTGGCCACGAAAGACAGGAGGATTTGGTGGAAACACCTGAGGAAATAACTGGGGTCTCCCT-CACACTCTGCTGAAGCCTGTAGCCACAGAATCTTCTTC--AGAGACTCTCTGATCAGGCAGCCTTCTCGTTCTCCTG---------AAGGTCAAGGGAGGTTACCTGAAGCACGCGCAGCCCAGACCTTTCTGGGGGACTCCGTGT---TACCTCCCTCTGCCTCTAGCTGGTTTCTCTGTCTCCATTTGAACTCTGGAGGCAAA---GAGGCTGTCAGTAACACATTTGTTTCCATGAATTCTCTCAGCATGTCTCCCAGGCACAGTTCAAAGAGGGTTTTGCACGGAGCAGGGCAGG s mm5.chr10 55188973 794 - 130633972 -GTGAGA-----AAGAG----------------TAGGGTAAGA-----------CCCAGCC-TCGAGAACTCCAGCCCATCCCCTGCCCCCAACTGGGCACAGTCTAAAGTCAAGCCTCAGGGACACA--------GTCCTCCTCTCAGCTC----------------CTGTCTAGCCCCCAGACCTTTGGCCAGGCCATTCCTTCTACCAAAAGCTCTGGATCCTACCTTCACTATTACAAA---TCCCCATTTATCTTCAGGGCTTA-TCCCCGT-GTGGACTTCATTCCTAGCA--GACCCTCCCAAGGAGACCGGTCAGA-CTCCACAT-----------------GCCCTGGGTACCTGCTTACAGAAGAAGCCAAGCCACCACTGTCCTA--------CTCCGGGGGTGATAGGCTTCACAC-TTTCCTTCTGAGTGCCTGACTCTAGCAGAGAGCCTGGCTCTATCTTTGGACTCCTGGAA--------------------TAGCTTGGGGTTGGACATCTATCAC--GCTCTTCTTCCAAGGAGACACCCA--------------------GTGACTAGCTGC--ATGGGTCAAGACTTACCTTCCAGTA------GGAGCCCCCAAACCTTTCTTGGGGAGGTGGCT----------------TTTG--AAAAACAGCTGTATGGATGGGCAGGAACTCTCTCCACACTCTGCAGAGACC-----------GATCTTCCCT----GAACTGCTAGAGCAGGCTACCTCCTGGCACTCCTGAAAAATCGCAAAGTCAAACG----TGTGTGAGGCAGGCCCAG----AACTTTTCTGGAGAGCCTGATGTGCGGAGCTTCCTCTGGCTCTCACTGACTTC-CTGTCTCCCATTGAACTCCTGAGCCTCA---GAAGCTGCCAGCG--------GCTTCCACGTAT----GCATGACTTCTCCCAAGAGCTGC-----------------CGGGGAAGGG-GGT s canFam1.chr26 10663243 900 - 41009621 GGTGGGAGTGGTAGGAGGTGCAGTAGAGGTTAACAGGATTAGGGATTGCCACTAGCTAGCCTTTGGGCACAC---CCTGACCCTC--ACCTCACAAGGTACAGCCCATAATCAAGCCTCAGAAACATG-TTCCTGTgtctccttctatccccctagaaaacgcatggactgtccagctcccggatctttgctcaggccattccctctgcctg--gCTCTG-------TCTCTGTCCTCCCAAATC-TCTCTGCTTTTCCTCAGGGCCCCTTCCCAGTAAAGAACCACATCTCCAACAGAAACCTCTCCTGGGAGCCC--CCAGA-TTCCACATGCCCCTGCTTCTGCAGGGCCTTGTCTATCTCC-CAC---AGTGG--GAG---CCACTG-CCAAGCAGGGAACTCCACGAGGGACAAGCCTGGCCT-GATCCTTCTGTGACCCCTACCTCAGCCCAGAGCCAGGCACCATCCATGGGCCTCTCAGAGCGGCCTGCCACA-------GACTGTGGGGCTCAGCTTCCATTGTACACTCAGAGAC---AGGACACCCCACGGTCTCCTCCTGAAATGGCCAGACGAGCTGCC-CGGGGCAGGGGCCTACC-TTTGTCAGCAGATGAGAGCCCCACGCTTTGCCTGCAGGGATGGCAACAAAAGCCAGGGGGGCTTGGCTGAGACAGCTGATGATATAACTGGGATTTTCCT----------CTGTGGTCTGCGGCCACAGGATCTGCTCCAGAGAGATACCCTGACCACGCAGCCTCCTCGTTCTCCTG---------AAAATCGAAATAGTGTTCCTGAAACAGGCCTAG-TCAGCCCTCCCCAGGGAGCTCTGTGA---------------------GGAGGTTCTTCTGCCTCTAGATGAACTCTGGAGTTGAAGAGGAGGCTGTTTGTGGAAGATCT----------------------------CCAGGCACAGCTGAGAAAGAGTTTGCCTAGAGGAAGGCCCGG a score=3137.0 s hg17.chr13_random 100508 18 + 186858 TAGGGGACAGGGCATTCC s panTro1.chr12 22803429 18 - 117159028 TAGGGGACAGGGCATTCC s mm5.chr10 55189767 18 - 130633972 CACAGAACTGGGCATTCA a score=12447.0 s hg17.chr13_random 100526 115 + 186858 TGCAGAAGCCCAGGATGTGCATGTGGTA--AGCATGGCA-------AAGGGGGCTCAAGGGGCAC-----------Cgccagccttccctgctctgatgctggacttgccactcacctgctgtggggcctcaggc s panTro1.chr12 22803447 115 - 117159028 TGCAGAAGCCCAGGATGTGCATGTGGTA--AGCATGACA-------AAGGGGGCTCAAGGGGCAC-----------TGCCAGCCTGCCCTgctctgacgctggacttgccactcacctgctgtggggcctcaggc s mm5.chr10 55189785 113 - 130633972 TGCGTAAACCCAGGATTTGGTAGTAATAGCAGCATGTGAACCGTATAAAAGGGTTCAAGGGTC---------------CAGGCCCTTC-----CTGAGACTGG--TTGGTATGCACCTGTGGTGGGACTTTGTGC s canFam1.chr26 10664173 99 - 41009621 TGATGAAGCCCA-------CATGTGCCA--GAC-------------CAAGGGGTT---GGGGCACGCAGTCTCTGGAGTCAGCCCATCCCAT-CTAAGTC-----TTGCCCCTCAAC-----TGGGGCCTTTGGC a score=92015.0 s hg17.chr13_random 100641 696 + 186858 aaatcactg---aactGTCCAGCCTGGAAGATGGCAGCACCTCACTTGCCTTGCTGCTGGGAGTGTTGT--GAATAGAGTAGGTTAGACTGTGGGCAGGACTTGGTGAATGGTAGCTGTGATTATCATCATGGCTGCACTGGGGACACCCCCAGGAGGCCTGAGTGGCACAG--------------GTCTCTTGCTCACTCTATGTCCCCTGTGGACTCCCTTCCAGGCTGTGCAGTGAGTGGCAGCAGTGACCCTTGGGAAGTCTCATGGCTATGGCAGCAAGTGACAGGTGTGAC---AACAGGGAAG-AGGGATGTGGTGACAGAGGTTGGGGTTCCCCTCTCCCACAGTCAGTTTCCCACAAAGGGC-GGTGTCTGCCAGCAAGCCCCTCCAATGAGCCCCAAGCTGGGTTTCCCTCCACTCCACCCTGTCCCAGTGCAGAGCGTCTGACCTCAGAGG-CAGACACACTGTCCCAGAGGTGGTCTACGAATGGAGTCCCTGTGCCCTCCCCACACACAGGGAACATCCAAATGC----CATCGTGGAAGGGTGGCCACCTCCCCAGGCTTGGTGGGCCTGGGGCTGATAGTGTGATACATTTGACCCCCTCCCAGCCCTGGATGCAGACACCAAGAGCAGAGAGACCTGGCAGTAGCCACACAGCAGCGCACCACCGCACATCCCCAGCACAATCCAAAGCAGCCCCTCATCCCCACCGTG s panTro1.chr12 22803562 696 - 117159028 aaatcactg---aactGTCCAGCCTGGATGATGGCAGCACCTCACTTGCCTTGCTGCTGGGAGTGTTGT--GAATAGAGTAGGTTAGACTGTGGGCAGGACTTGGTGAATGGTAGCTGTGATTATCATCATGGCTGCACTGGGGACACCCCCAGGAGGCCTGAGTGGCACAG--------------GTCTCTTGCTCACTCTATGTCCCCTGTGGACTCCCTTCCAGGCTGTGCAGTGAGTGGCAGCAGTGACCCTTGGGAAGTCTCATGGCTATGGCAGCAGGTGACAGGTGTGAC---AACAGGGAAG-AGAGATGTGGTGACAGAGGTTGGGGTTCCCCTCTCCCACAGTCAGTTTCCCACAAAGGGC-GGTGTCTGCCAGCAAGCCCCTCCAATGAGCCCCAAGCTGGGTTTCCCTCCACTCCACCCTGTCCCAGTGCAGAGCGTCTGACCTCAGAGG-TAGACACACTGTCCCAGAGGTGGTCTAGGAATGGAGTCCCTGTGCCCTCCCCACACACAGGGAACATCCAAATGC----CATCGTGGAAGGGTGGCCACCTCCCCAGGCTTGGTGGGCCTGGGGCCGATAGTGTGATACATTTGACCCCCTCCCAGCCCTGGATGCAGACACCAAGAGCAGAGAGACCTGGCAGTAGTCATGCAGCAGCGCACCACCCCACATCCCCAGCACAATCCAAAGCAGCCCCTCATCCCCACCGTG s canFam1.chr26 10664272 580 - 41009621 AAGTCACCGACCACCTGTGCAGCAGGAAGGACACAGGCATC------------CTATGGGGGATGTTGCAGAGATGAAGCAGATTGGAAAGGGTGAAGTGCCAGGTGAGTGTTGACTGTAATTATTGT--TGGCT--ACCAGGGTCATCCTCTGGAGGCCTGGCTGGGGCAGAAGGAAGATGGTCAGGCTTCTGCTCATTGT---TTCCCCATTGACTACCTTCCCAGCCTTGCTGGGAGGGACAGTGGTGAGCCTTTGGATCCCTT-CGGTGGTGGCAGCAGGTGAGGGGTGTGACCCACACAAGGAAGAAGAGGTGTGGTGACAGAGG-----------------CAATCTCAGTTACCTCCAAAGAGTGGGTGTCTGTCAGCA-------------AGCCCCAGGCTGGGACT-CCTTGGGTTCACCCTGTCT--GT-CAGAGGGCCTGAGCTCCAAGGCCAGACATGGTGTCCCAGAGATGGTCTAGGAATGGAGTCC---------CATCCCACGTCGCAGAAATCCAGAAGCTAGTCGGCATGGAAGGGCTTTCCCCTTCCC-GGCTCAGTGGGC-----------------------------------------------------------------------------AGCCATACAGCAG-ACACAACCCTATATCCCCAGTGGGATTCAAGCCAGTCTC---TCTCCACCATG a score=32422.0 s hg17.chr13_random 101337 249 + 186858 ACCACCACAGCCTGAATCCAGGCGCCACCTGTTTCTGATCTGAACTCCCTCACAGCC-CCTGCCTGCACTCCCTCCCTCCAACATCACCTGCCC--TTCAGTCTTCCAGAAAGCAGCTAGAGGGCTCTGTCTGTCCAACTACAGAA--CAGGCCCTGCCTCCTCCTTGCCCCGTTGGACAGCTCACACCCTTCACCAAGCCTGACAGCGCTCCTGCCACTCCAACACCCTGGGTCCCAGCCGGGAGTCCGGGTC s panTro1.chr12 22804258 249 - 117159028 ACCACCACAGCCTGAATCCAGGCGCCACCTGTTTCTGACCTGAACTCCCTCACAGTC-CCTGCCTGCACTCCCTCCCTCCAACATCGCCTGCCC--TTCAGTCTTCCAGAAAGCAGTTAGAGGGCTCTGTCTGTCCAACTGCAGAA--CAGGCCCTGCCTCCTCCTTGCCCCGTTGGACAGCTCACACCCTTCACCAGGCCTGACAGCGCTCTTGCCACTCCAACACCCTGGGTCCCAGCCGGGAGTCCGGGTC s mm5.chr10 55190458 210 - 130633972 ACCGCC-CTGTCTCAATCTAGGCA-----TGACTCTGACCTGAA------GACAGAG-ACT-----CACTCCTTCCTTCC-------TCTGGTCAGTTTGGTGTCCCAGGAGGAAGCTGCTGGGCTCCTCCTATCC-ATTGTGGCACCCAGGCCCTG--TCCTTATTGTCCAA-GGGACAGTTCATACCCTTCTTTAGACCTGATA---------------CAGGTACCCAGGTCCCTGGGGAGGACCTAGGTC s canFam1.chr26 10664852 211 - 41009621 ----------ACTGAATCCAGGCACCAGCT--TTCCTGGCTGGACTCCTGCAAAGCCTCCTCCCTGCACTCCCTCCCATCAGCATCACCGGCTC--CTCAGTGCTCCAAAGGGC--CAACCAGACCCTACCCCTGCCACTGCTC----CAGGCA-----TCATCTATACCCTC------------TGCCTTCCAGCGGGCCGGATGGCCCTCAGAGCAC------ACCCTGGAGGCTGGACTGGGTTAAAGATT a score=18776.0 s hg17.chr13_random 101586 112 + 186858 AGGGTTAAGGGTTCCTGATAGAGACACCGATTCCTGGAGGTCCAA-AGAGCCTCAGGAGCTGGGCCAG--CAATATGCAGCATC---TATTATGGACACAGAACATTCCCATCACATg s panTro1.chr12 22804507 112 - 117159028 AGGGTTAAGGGTTCCTGATAGAGACACCGATTCCTGGAGGTCCAA-AGAGCCTCAGGAGCTGGGCCAG--CAATATGCAGCATC---TATTATGGACACAGAACATTCCCATCACATg s mm5.chr10 55190668 116 - 130633972 AGGGTCTGGGACTTCTGGT-GAGAAAGTCACACTGAGGGTTTCAAGGGGGTCTGAGTGGCCAGGGCAGTCCCGTGTGTGGCATCATTCATCTTTGATACAGAACACTCCCATC-TATG s canFam1.chr26 10665295 77 - 41009621 AGGGTTAAGGATTCCTGGTAGAGACAGCTATGTTGGTTGGTCCCA-GGGGCCTCAGGAGCC-------------------------------------CAGAACTTT---ATTACATG a score=28519.0 s hg17.chr13_random 101698 331 + 186858 gccgggtgcagtggctcacgcctataatcccagcactttgggaggtagaggcaggtggatcacctgaggtgaagagttggagaccagcctggacaacatggtgaaacccccatctccactaaaaatacaaaaaa--ttagcctgg-catggtggcaggtgcctgtaatcccagctactcaggagctg-agtcaggagaattgcttgaacccgggaggtggaggttgcagtgaggcaagattgcaccactgcactccag-cctgggcaacaagagggaaactccgtctcaaaaaaaaaa-gcaaaaaacaaaaacaaaaGGACATTTCCACCACAAGT s panTro1.chr12 22804619 337 - 117159028 gccgggtacagtggctcacgcctataatcccagcactttgggaagtagaggcaggtggatcacctgaggtgaagagttggagaccagcctggacaacatggtgaaacccccatctccactaaaaatacaaaaaaatttagccagggcatggtggcaggtgcctgtaatcccagctactcaggagctggaggcaggagaattgcttgaacccgggaggtggaggttgcagtgaggcaagattgcaccaccgcactccaggcctgggcaacaagagggaaactctgtctcaaaaaaaaaaagcaaaaaacaaaaacaaaaGGACATTTCCACCACAAGT a score=309605.0 s hg17.chr13_random 102029 1436 + 186858 CATGGGGCAGGGGCCTGGCCTGGTCAGTGACC--CTGTCCTAGCATG---ACAGCCCCCTGCACCAAGGAAGCTATCCAGTCCCGTCCACTGGGCCGGGTCATGCTGAGTGCCCTGGAGGGCATGGCCTCATCTCTCCCAGGCTCAGGGTCATGAGCTGA-----GCCCCCAG---TCAGGATCCT--------------------GGGGTGGTCCAACCATGA-------------------CCCAGCCTCCCCCGTCTGTTAATCTCTCT--------ACCCAAAGGCCCAAGTAGGCACCTGGAGGAGCAGGGGGCACCCAGCCAGGCTCAGACTGCTGGGAAGAACAGGGAGGGGAGTAGGCAG-------TGCTGGGCCCTGTCCCTTCCTCCCAGAGCAGGTCAGCAAGGGAGGGTGGGCCCAGCCTCCCACAGGCAGATGTCCACGGCTCGGAGGAAGACACCCTGCTGAGGTCCTGGGCTTCCATTTCCCATCCCTCCACCCTC-----------------AAAACTCACTGAAAGAATGTCCAAGCCCAGAGGCCTGGTTCTCACCCAAACAGTGTGAGAGCTGCACACACTAGGGGAAACTGAGGCTAGAAAGTAGGTCAGCTGCCATGGTTGGCCTCAAACCCAGACCC--CCTTCCTTGTGACCCTGATGGGCTTACCTGAGG-CCTGGGGACAGTGGGGGCCCAGGAGAG-CACCTCTTCCTCAGAAGACAGTTCTGGGCTGCACCTGCTGGGGAGGAAGAGACAGACTTGTCTGCCTGGGAAAGTCCCAGCCACAGAACTGGCTGGGCACCCCCACTCTCCAGAGTGGC--TCAGAGCCACGCCTGCGGCCCCCTGCAGCACTCCTCAGGGGGC---CTCCAAATTGGGACTGGGATCTGGGGGTGGCCACCTCCGAGGAGGAGCAGAGGCAGGGAAAGAGCAGGAGCGGCCGGAGG-ACCCATGAGCTTACCTAGTC----------CAAGAGACCAGCCAGGGGGTGCCCAGCAGCCCTGGTGGACAGTGGGAGGCATCCGCACAGGGTGCAGGACAGGCAGGCCTCTCACAGAGATCCAGCCTGGCTGGGAGGATGG----GGAA-GCTGACGTCACA-GCAGCAAGGAGGCGCACAGTGACTTGGCACGGTGACTCGGCCTGTCATCGCATGACTAAAGTTCACGCAGCCCTGGCAGGGCCCTGGAT---------GGCAGGTGCTATGA------------------------------------------------------------------------------GCCGGGGAAAGGGTTTCCTT--CCTTTCAGACTCAGTTCCCTCCAAAGGGCACTG-TCTGCCCACGA--GCCCCTCCAGAGAGCCCCAGGCTGGGT-CCCTCTGGCTCTCCCTGTCCCTGTTCAGAACATCTGAACTCACAGCCAG------TGTCCCAGAGATGGCTCTGGAGGCGGTGGAGTAGTGGT-GCCCCTGGCACTAGACCAGAACCCAGA-CTAAGGGGCCTCACCACAC-GCTGCTGTCAATGCTAAAGGTGTGTTCCAGGAACATGGCCTGGGGCC-CTGAGTGCAGACTGGTTCTGCTGCCCATCCAGAAAC s panTro1.chr12 22804956 1438 - 117159028 CATGGGGCAGGGGCCTGGCCTGGTCAGTGACC--CTGTCCTAGCATG---ACAGCCCCCTGCACCAAGGAAGCTACCCAGTCCCGTCCACTGGGCCGGGTCATGCTGAGTGCCCTGGAGGGCATGGCCTCATCTCTCCCAGGCTCAGGGTCATAAGCTGA-----GCCCCCGG---TCAGGGTCCT--------------------GGGGTGGTCCAACCATGA-------------------CCCAGCCTCCCCTGTCTGTTAATCTGTCT--------ACCCAAAGGCCCAAGTAGGCACCTGGAGGAGCAGGGGGCACCCAGCCAGGCTCAGACTGCTGGGAAGAACAGGGAGGGGAGTAGGCAG-------TGCTGGGCCCTGTCCCTTCCTCCCAGGGCAGGTCAGCAAGGGACGGTGGGCCCAGCCTCCCACAGGCAGATGTCCCCGGCTCGGAGGAAGACACCCTGCTGAGGTCCTGGGCTTCCATTTCCCATCCCTCCACCCTC-----------------AAAACTCACTGAAAGAATGTCCAAGCCCAGAGGCCTGGTTCTCACCCAAACAGTGTGAGAGCTGCACACACTAGGGGAAACTGATGCTAGAAAGTAGGTCAGCTGCCATGGTTGGCCTCAAACCCAGACCC--CCTTCCTTGTGACCCTGATGGGCTTACCTGAGG-CCTGGGGACAGTGGGGGCCCAGGAGAG-CACCTCTTCCTCAGAAGACAGTTCTGGGCTGCACCCACTGGGGAGGAAGAAACAGACTTGTCTGCCTGGGAAATTCCCAGCCACAGAACTGGCTGGGCCCCCCCACTCTCCAGAGTGGC--TCAGAGCCATGCCTGCGGCCCCCTGTAGCACTCCTCAGGGGGC---CTCCGAATTGGGACTGGGATCTGGGGGTGGCCACCTCCAAGGAGGAGTAGAGGCAGGGAAAGAGCAGGAGCGGCCGGAGG-ACCCATGAGCTTACCTAGTC----------CAAGAGACCAGCCAGGGGGTGCCCAGCAGCCCTGGTGGACAGTGGGAGGCATCCGCACAGGGTGCAGGACAGGCAGGCCTCTCACAGAGATCCAGCCTGGCTGGGAGGATGG----GGAA-GCTGACGTCACATGCAGCAAGGAGGCACACAGTGACTTGGCATGGTGACTCGGCCTGTCACCACATGACTAAAGTTCACGCAGCCCTGGCAGGGCCCTGGAT---------GGCAGATGCTATGA------------------------------------------------------------------------------GCTGGGGAAAGGGTTTCCTT--CCTTTCAGACTCAGTTCCCTCTAAAGGGCACTGGTCTGCCCACGA--GCCCCTCCAGTGAGCCCCAGGCTGGGT-CCCTCTGGCTCTCCCTGTCCCTGTTCAAAACATCTGAACGCACAGCCAG------TGTCCCAGAGATGGCTCTGGAGGCGGTGGAGTAGTGGT-GCCCCTGGCACTAGACCAGAACCCAGA-CTAAGGGGCCTCACCACAC-GCTGCTGTCAATGCTAAAGGTGTGTTCCGGGAACATGGCCTGGGGCC-CTGAGTGCAGACTGGTTCTGCTGCCCATCCAGAAAC s mm5.chr10 55190784 1280 - 130633972 CAGGAGGTAGGAAATGGGTGTGGTCA--------CTGCTCTGGC--------------------------------CCAGT--------------TGGGGCATCTTGA-----------------GCTTCATTTCTTTTAGGTTTGGAGGTGTAAACTTAAAGTGGTCCCAGGGTCTCAGCACGCT--------------------GAGGTGTACCATCCGTGATACCCACGGTG--------CACAATTTTACCTTTCCATT-CTGTATCC--------ACCCAATAGCCC-------------------CCAAAGGCACCAGGCAGGGTTCCTCCTTCTAAAAAGCCT-----GGGAAGTGGGCAGCCCTGACCCCTGACCCCTGTCCCTTCCTCCCGGGAC---------GGGGAGGGCTGGTCCAGCCTCCTTTGAGCAGATGTTTCAATCCAAACGGAAGACACCCTGCTGGAAGCCTGGGCTTCGATTTCCCACCCCTCCACCCCCA------AGTTCTCTCAAAGATTCACTAAAAGAATGTGCAGGGCCAGAAGCCTGGCTA-CACCCA-----TGTCGGTGTTG-------GGAGGGAAACCGAGGC--------------ACTG--------GTCCTCAAGTCCAGACCCCTCCCTTTCTGTAGCTCTGGTGGGTTTCCCAGAGGCCCTGCAGGCAGTGGGGACCCAGGAAAGACCCCTCTTCCTCAGAGGATGGTTCTGG---------AATGAGGAGGAGGAGGAATAGAGGTCCACC-AAGAAAGTCCTGGCCACAGAGCTGGTTG------------TCCCCGAGAAGCAGCCAGAGCCATACCTGTCA-CCCTTACAGACTGGCTCAGTGCCCCCACCCCAACTTGGGATCAGGATCTGGGGTTGAGCAGCTCC---TCAGGGCAGAGGTAGGAAAGGGGTA----------TAGG-ACCCACGTGCTTACCTAATCCCAGGGGGGGCAAGAGGTCAGCTAAGGGGTGCCCAGCATCCCAGAAGGGCATCTGAAGGCTTCTGAGTGGGGTGTGAGGTAGGGAGTCCTCTGTAAGAGGTTCAGATAGGCTGGGAGGATGG----TCAACGCTGACGTCACA-GCCGCAAGGAGGCGCAGCGTCA----------------GGCTTGTGACCAGGTGACTAAAGTTCATGCAGCCCCAGGAGGGCTCTGGGCGGGGGAGGAGGGAGGTACTAAGA------------------------------------------------------------------------------GCCTGGGAAAGGGGCTCCCCCACTTTCCAGATTTGGTTCCCTCTAAGGGGCAGAG-GCCACCGGTGA--ACCCTTCCAGACAGCCCC-TGCTAAGT-CCCTCTG---------------------------TGAATTTAGAGACAGACATGATGTCCTCAAAAATGTTCCTGAGGCAATAAAGTAGGGGTAGCCCCAGGCACTAGACCATAGCTTAGATCTAAGAG-------------------GTCAATGACAGCCGTGTGTTCCTGGAACAGGGCCTGGGGCCTCAGCTTCCAGACCGGTTCAACCACCATTCAAGGAAC s canFam1.chr26 10665382 1486 - 41009621 GATGGGACAAGGA--------GGCCAGTGACCCGCCTTCCCAGCATGGGCACAGTCGCACCTGCCAAGGAAGCCCCCCAGTCCCATCCACTAGG------CACCCTGG----------GGGCATTGCCTCATTTCTCCTGGGCTTGGGGCTATGAGCCAA-----GACCCCCT---TCAGGGCCCTCCTCTCTTCCCTCAGGCCTCTGCACTGTCCAGCCACGA--CCTCCTGTGGTCTGTACTCCAGCCTCCCCTAGCTGCCCATCTCTCTGTCCATCCACTCAAGGGATCAAGTGGGCTTCCAGAAGGACAGGAGGCACCCAGCAAGGCTCAGACTGCCAGGGACTAT-ACGAGAGGGGTGGACAG-------CCCTGACCCCCATCCTCTCCTCCCTGGGCAGATAGC--AGGGAGGCCTAGCCCCGGC-CCTGCAGGCAGACATACCCTGCCCTGCGGAAGACACCCTGCAGGGGA-CTGGGCTTCCGTTTCCCACTGCCTCTCCCACACCCCACATTTTTCTCAAAGACTTA-TAAAATAATGTCCAAGCCCAGAGTCCTGGCTCTCACCCAAATCATGTCAG------------GAGGAGAAACTGAGGCCAGAGAGTAGGTTGGGCAAAACACTTGGCCTCAAACCCCCACCC--CACTCTTCATGCCCCTGGTGGGCTTACCTGAGG-CCCAAGGTTCGTGGTGTCCCAGGAAAG-CTCCTGTTCCTCAGA----AGTTCTGG---------ACTGG---GACATGGCCAGATTAGTCTGCCTGGGAAAGTCTGGGCTAGACCTCCAGCTGGGCTCCCCCACTCCCAGGAGTGGC--CCAGAGCTGCGCCTGCG--CCCCTGCAGAGCTCCTCAGGGGGC---CTCTGAACTGGGATTGGGATGGGGGGGAGGGTACCTCCAAGGAGGAGCAGAGGCAGGAAAGGGGCAGGAGAGGGCAGAGGAACTCTCCTGCTCACCTAGTCCCAGAGGGGGCACGCGGCTGGCCA--GGACACACAGCAACCCCGTGTGGCAGTTGAAGGTGTCTGAGTAGGATAGAAAGAAGGCTGTCCTCT--AAAAAATCCAGCCTGGCAGAGAGGACAGCCCCAGAG-TCTGACGTCATG-GCAGCAGGGAGGC----------------TAGAGACTTGGCCTATCACTAAGTGACTAAAGTTCACACAGCCCTGGGAGGGCCCTGGGCAGGAGAT--GGGAGGTGCTATGACAGTAGTGACTCTTGGGGTCCCATGACAATGGTGGGAGGTGAGGGGTTTGGCCCCAACAGGGAAGGAGAGGTGCGGTGACAGAGGCAGAGGGTCCCCC--TCTCTTAGACTCAGTTCTCCCCACAGGGTAGAG-TCCACTGGCAAGTGCGCCTCCAGCAAGCCCTAGGCTGGGTACTCCCTGGCTCACCCTGTCCCTGTTCAGAGCATCTGAGCTC-----CAG------GGCC-------------------------AAACATGGT-GTCCCAGAAGCAGGAC------------CTGAGAGCCCTCACCACACTGCTCGGGCAAATGCCAAGGGGGCCTTCCTGGAACACAGCCTGAGGCC-TTGAGTCCAGACCAGTTCCACTGCCTATGCAGGAAC a score=63904.0 s hg17.chr13_random 103465 242 + 186858 ATTAGCACCCCAGGCCCAAGGAACCACC-TGAACAGCCCAGAAAGGCAGGGCCCAGAGAGGGCCTGAGCTGGCCCAAGCTCACAGAGCCCAGCAGTGCAGACTTGGCCACCTGGTAACTGCC-CCAAGTT-ACTGC-ATGTTTCTGACCAGCCCACCAAGAAG--TCTGAGCCAGGAACAGCTGCGGACCCAGCCCAGGGG-ACTTTGGACAGTGCTGCCCATTCCCCTGTGGCCCTCATCTGCCAAGG s panTro1.chr12 22806394 243 - 117159028 ATTAGCACCCCAGGCCCAAGGAACCACC-TGAACAGCCCAGAAAGGCAGGGCCCAGAGAGGGCCTGAGCTGGCCCAAGCTCACAGAGCCCAGCAGTGCAGACTTGGCCACCTGGTAACTGCC-CCAAGTT-ACTGC-ATGTTTCTGACCAGCCCACCAAGAAG--TCTGAGCCAGGAACAGCTGCGGACCCAGCCCAGGGGGACTTTGGACAGTGCTGCCCATTCCCCTGTGGCCCTCATCTGCCAACG s mm5.chr10 55192064 194 - 130633972 ATTAGC-CCACAGACTCAGACAGTGACAGGGAGCAGCCTAGAAAGACAAGGCCCAGAGAAGGCCAGGCCTGACCCAAAGTCATATGATCCAGCAGGGCCATCCT-GCCACATGGTTCCTGCC-CCAAATTAAATGG-ATG--------------------------------------CAGCTGTGGGTCTGCCTCAAGGG-------------GCATCCAGTTCCCTCCTGGTCCTCACTGACCAAGG s canFam1.chr26 10667070 245 - 41009621 GTTAGCACCTCAGGCCCAAGGAACCTCC-TGAGCAGCCTGGAAAGACAGGGCGCAGAGAGGGCCAGAGCTGGTCCCAG-TCACAGAGCCCAGCAGCGCACACCTGGCCACCCTGTACCTGCCTCTAAATT-GCTGCAATGTCCCTGACCAGCCCACCGAGGGGATCTTGAACCAGGAACAGGTGCATGCCCAGCCCAGGAG-ACTTTGGACTCTGCTTCCCATTCCCCTTTGCCCTCCATCTGCCAAGA a score=82576.0 s hg17.chr13_random 103707 550 + 186858 ATATGGGCCAGAGTCTCCCTGAGTCATGGCTCCCTCCCCTGATCCTGG---------TCTACAGTGCCGGAGAGCCCCTGCAGCCTCCACCTGAGGTCTATTCCGTGCCCATAACACCTACCCCACAATCATCCTTCCAAGCTGCCCCAAGCTGACAGAAGGGGACATGAAGGCTGACCCAATATTGCTGCCTGCCTGGGTCACATAG-----GCCTGTCCTGTC-----------------------------------ATCCAC-TGCTCTCAAATGGGCTCTGGACAGAACCCACCAGACA---CACAACTGTGAGATCCTCAATAGCCCTAGGGTGGAGGTGCTATGACCAAGCCCTTTCTCAGGCTATTCCTCCC--------CCTGAAGATCAGGGTGACTAGGAAGAT-GACAGGGCAGGA-------ACCAAGGCCCCATGACCTGTCCCTGAAGGCTAGACAGCCAACAGGAACATCAGGGGATTTGGCCCTGCTAAGTGGCTGAATTCCATGGCAgtcagccgggaggggtctaaagtggagagccatagggctctgtcccctgc-----cctgctcagcagtttcctctctgcctgagagcctataagacatg s panTro1.chr12 22806637 559 - 117159028 ATATGGGCCAGAGTCTCCCTGAGTCATGGCTCCCTCCCCTGATCCTGGCCTGCTGTGTCTACAGTGCCGGAGAGCCCCTGCAGCCTCCACCTGAGGTCTATTCCGTGCCCATAACACCTACCCCACAATTATCCTTCCAGGCTGCCCCAAGCTGACAGAAGGGGACATGAAGGCTGACCCAATATTGCTGCCTGCCTGGGTCACATAG-----GCCTGTCCTGTC-----------------------------------ATCCAC-TGCTCTCAAATGGGCTCTGGACAGAACCCACCAGACA---CACAACTGTGAGATCCTCAATAGCCCTAGGGTGGAGGTGCTATGAACAAGCCCTTTCTCAGGCTATTCCTCCC--------CCTGAAGATCAGGGTGACTGGGAAGAT-GACAGGGCAGGA-------ACAAAGGCCCCATGACCTGTCCCTGAAGGCTAGACAGCCAACAGGAACATCAGGGGATTTGGCCCTGCTAAGTGGCTGCATTCCATGGCAgtcagccgggaggggtctaaagtggagagccacagggctctgtcccctgc-----cctgctcagcagtttcctctctgcctgagagcatataagacatg s canFam1.chr26 10667315 558 - 41009621 ATAAGGATGAGCCACTCCTTAAGTCATGGCTTCTTCCCTGGCCCCCCACTCGTGGTATCTAGGCTGCCTGGGAGCCCCCACAGTCCCCATCTGG------------------AATATCTAATCTATGACCATCCTACAAGGTTGTGTCAGG-GGATAAGCAGAGAGACAGAAGCTGACCAC-------------CCTGAGTCATACAGTCAAAACAAGTCTTATCAAaaaacaaaacaaaacaaagcaaaaACAAGTCTTATCCTCATCCTCTCAC-----CCACGGATGAGATCCACCAAAAAATGCATTCCTATGAAATCCTCCATAGCCCCAGGATGGGGGTTCTATGACTAAGCTTTTTC----------CCCCCCAGACATCATCTGCAGACCAGAATGACTGAGAAGATGGACAGGGCAGGATCTGCGGACCAAGG-CCCATGACCTGTCCCTGAGAGCTAGACA-CCAGCCAGGATGTCAGGGGATT-----------------TGCACTGCAGGGCAgtcagctgggaggggtctatagtggagagacacggggctctgtccctagtctgagcctgctcagcagttttctccctgcctaggaaggcataagacacg a score=29117.0 s hg17.chr13_random 104257 333 + 186858 catgttctcactcataggttggaattgaacaatgagaacacttggacacaggaaggggaacatcacacactggggcctgtggtggggtgaggggaggggggagggatagcattaggagatatacctaatgtaaatgacaagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgtacgttgtgcacatgtaccctggaacttaaagtataatTTtatatataatactatatatatt-------tataatatattatattatataaattacataaatataataattatataatatatt----atatatatatatatatatGACAT s panTro1.chr12 22807196 344 - 117159028 catgttctcactcataggttggaattgaacaatgagaacacttggacacaggaaggggaacatcacacactggggcctgtcgtggggtgaggggatgggggagggatagcattaggagatatacctaatgtaaatgacaagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgtatgttgtgcacatgtaccctagaacttaaagtataatTTtatatataatactatatataatacatttatataatatattatgttatataaattacataaatataataattatataatatattttatatatatatatatatatatGACAT a score=35056.0 s hg17.chr13_random 104590 218 + 186858 ACAGGATTCACAGCAGCAGGTGGGCAGGAAGAAAGTCTGAGTGGGTAAAGGATGGCCCAGATCCCTGCAGCTGACCCCAAAAGGAAAACCCTGGGCTGGGGAAAGTAGGGA----GACAGAGCTGCCTTCCATGGGGCACAGCTGAAGCCTGGCAGCAGCTGAGGATTCCAGAGAGGGG-AGACAGGA-GGGGAGGCACTTT----ATCAAAGGACATGTTAATAGAG s panTro1.chr12 22807540 224 - 117159028 ACAGGATTCACAGCAGCAGGTGGGCAGGAAGAAAGTCTGAGTGGGTAAAGGATGGCCCAGATCCCTGCAGCTGACCCCAAAAGGAAAACCCTGGGCTGGGGAAAGTAGGGA----GACAGAGCTGCCTTCAATGGGGCACAGCTGAGGCCTGGCAGCAGCTGAGGATTCCAGAGAGGGGGAGACAGGACGGGGAGGCACTTTTTTTATCAAAGGACATGTTAATAGAG s canFam1.chr26 10667873 208 - 41009621 gcagtatcagccgcagcaggaaggtaggaagaatGTGTGAGTGGGCAGAGGGTAGCGCAGA-CCCCACGGGTGATTCCAACAGGAAATCCCTGGCCTGGGACAAGCGGGGATGGGGAGAAAGCTGCC-----TGGGG----GCTCAGACCT----GCAGCTGCAAGTTCCAGGGAGGGG-AGTCAGGA-GGAAAGGGGTCTC----ATTAAAGGCTGTGTCCACAGAG a score=782.0 s hg17.chr13_random 104808 8 + 186858 GTAGGGCC s panTro1.chr12 22807764 8 - 117159028 GTAGGGCC a score=46012.0 s hg17.chr13_random 104816 278 + 186858 TACAGAATGAAGGAGGCTTTTCCTCACTTGCTGAGTGTGTCACATTCTGTCCCAGTCAGCCCTCTAC-CCCCTGAATGCAGAGAGGGCACCTAGGGGGAAGTGGGTCTGGGGAAGCCATGTCACCTGAGGAAAGACTGCAGGGGCTGGCCTAGAAGTCTTCTCCAGACCCCACAGCTCTTGTCCTGGGCACATAaggtagtgagttccctgtcccgagaaatgtgcaagcCTCACTCACCCGGAGACACTGACTCTGGCGTCAATACCACCCACTTCCA s panTro1.chr12 22807772 278 - 117159028 TACAGAATGAAGGAGGCTTTTCCTCACATGCTGAGTGTGTCACATTCTGTCCCAGTCAGCCCTCTAC-CCCCTGAATGCAGAGAGGGCACCTAGGGGGAAGTGGGTCTGGGGAAGCCATGTCACCTGAGGAAAGACTGCAGGGGCTGGCCTAGAAGTCTTCTCCAGACCCCACAGCTCTTGTCCTGGGCACATAAGGTCGTGAGTTCCCTGTCCCGAGAAATGTGCAAGCCTCACTCACCTGGAGACACTGACTCTGGTGTCAATACCACCCACTTCCA s canFam1.chr26 10668326 230 - 41009621 TACAGAACAAAGAA---CCTTCCTCACATGTTGAGTGTGTCACATTCTATTCTGGTCAGCCCCCCAAGCCCCTACACGCCAAGA-GACGCCCTGAGGGGTGTCAGTCTGGGGAAACCACGTCACCCTAGAAAGGGCTGCAGGGGCTGGCTTGAAAA--GTCCCCAGGCCCCAGCGCTCCTGTCCTAGGCATGTAAGA-------------------------------------------CGGAGATACTGACTCCACCATCAGCACCACCCCCTCCCA a score=43701.0 s hg17.chr13_random 105094 208 + 186858 --ACACACGTGCAA--GCACGTGCACACACACACAACTG-------------AGCCTCATCTAGGCTGAGCAGAGCAGCTTC---CCAGGATGTAGCAGAG-AGAGGAGTAGGAGGAAGAGGTAGACACGGCAGCCAGTCTGAGGTTTCCTGGTTAATCCTTCAACCCAGCTTGATGGCTTT--GTCACCA--CAACCCCAGAGCCACAAGGGTGAAACCAG----------AGcacagcccc s panTro1.chr12 22808050 204 - 117159028 --ACACACGTGCAA--GCACGTGCACACACACACAACTG-------------AGCCTCATCTAGGCTGAGCAGAGCAGCTTC---CCAGGATGCAGCAGAG-----GAGTAGGAGGAAGAGGTAGACAAGGCAGCCAGTCTAAGGTTTCCTGGTTAATCCTTCAACCCAGCTTGATGGCTTT--GTCACCA--CAACCCCAGAGCCACAAGGGTGAAACCAG----------AGCACAGCCCC s mm5.chr10 55193007 237 - 130633972 --ACACATGTGCACATGCACACACACACACACACAATTGCACATACACCCCAAGCTGAATCTAGGCTGAGCAAAGTAGGTTC---CCAAGATGCTGTAGAGAAGGGTGGTATACAAGACAGCCAGAC-CAACAGCCAGACCAAAGTGTTTCTGCTAATCCTTCAACAGATCCACAGAGCTGTGGGCTGCTAGGAAGTCCCAGGGCCATGGGAGTCAAACTGGGCACAATGAAAACACAGCCAC s canFam1.chr26 10668556 195 - 41009621 ATACAGACAGACAGACAGACGTGCACACACACACAAATGGGCGTGTG-----CGCTGAATCTAGGCTGAGTGGAGCAGGTTCCTTCCAGGAAACCTCAGGG-AGGGAAACAGGAAGA-------------------AGCCTGGGGTTTCTCTGTTGATCTTCCAACCCAACCTGACGGCTGT--GTCACCT--------CAGAGCC-CAGGGGTGAAAC--G----------GGCACAACCCC a score=2543.0 s hg17.chr13_random 105302 15 + 186858 aaccccattcacagg s panTro1.chr12 22808254 15 - 117159028 AATCCCATTCACAGG s canFam1.chr26 10668751 15 - 41009621 AGACCGGTTCATAGG a score=43758.0 s hg17.chr13_random 105317 278 + 186858 caggaaactgaagcttagacaaa-agggatttaccgaggtcaGCTGGCCCC--AGGAAGTCTGCAG---ACCTGTGGGTGAG-------CCTGGGACCCACCCACCCCTTAC----------------------CCTGCCAGCCCCCAGCCTGAAGTCGCTATCCCTGGATATGAGAATGTACAGATCTCTGGCAGCTTCCCCAAGACC------GTCTACACCCCTGGACTGGATGCTTACT---ACCCAGAAGTGGAGTTGGAATCTGTCTCTCACAGTTTCCACCCTTGCGGCACAGAGT--tgagaatcagaaaaaacac s panTro1.chr12 22808269 279 - 117159028 CAGGAAACTGAAGCTTAGACAAAGAGGGATTTACTGAGGTCAGCTGGCCCC--AGGAAGTCTGCAG---ACCTGCGGGTGAG-------CCTGCGACCCACCCACCCCTTAC----------------------CCTGCCAGCCCCCAGCCTGGAGTCGCTATCCCTGGATATGAGAATGTGCAGATCTCTGGCTGCTTCCCCAGGACC------GTCTACACCCCTGGACTGGATGCTTACT---ACCCAGATGTGGAGTTGGAATCTGTCTCTCACAGTTTCCACCCTTGCGGCACAGAGT--tgagactcagaaaaaacac s mm5.chr10 55193478 255 - 130633972 AAAGAAACTGAAGTTTAGACAAAAGCAAACTGTCCAAGATGAGTTGTGCCA--GGGAGGTCGGCAGAGCACACGTGGGTCAG---------GGCATCCCACC------------------------------------CCAGTCCATATGCTG--GTAAGAACACCTGGGTATGAGAA--CACAGATCTCT--TTGGCCTCTCACACCT------GTCTGTATCCT--GACAGGACACTTACTTC-ACCCAGGCCTGAAGTTGGAATCTGCCT-------TATTTGCTGATCTGGTACAGACTACAGAGGATCAGGAAACATAC s canFam1.chr26 10668766 312 - 41009621 CCGGAAACCAAGATTTAGGTTGAAGCAGCTCACACAAAGTCAGCTGGCCCAGTGGGAGATGTGCGG---ACCTGCAGGTTGGCCCAGAACCTGTGCCCCACC-AGCCCTAACACCTCCACCGGCAGAGAGGACTCCCTCCACCCCCCACCCCA--ACCCCCGACCCTCTGCATGAGAA--CATAGCTCTCAGCCCTGGCCCACAGCCCTGGACGGGCCCACAGCCCTGGACCGGACACTTACCACTACCCAGGCCCGGGGTTGGGATCTGTCTCCCTCGCTAACC-CCCTGGTAGCATAAGGT--TGAGAATTAGGGAAAGCT- a score=7269.0 s hg17.chr13_random 105595 47 + 186858 cccttcagtaagatttaataaccacaacctgctggaaacctgtcgaa s panTro1.chr12 22808548 47 - 117159028 cccttcagtaagatttaataaccactacctgctggaaacctgtcaaa s canFam1.chr26 10669078 45 - 41009621 CCCTTCCGAAGTGCTTGACAACCACTAA--GTCGGATACCTGTTGAA a score=3689.0 s hg17.chr13_random 105642 10 + 186858 agaactatat s panTro1.chr12 22808595 10 - 117159028 agaactatat s mm5.chr10 55193834 10 - 130633972 ACACCTATAT s canFam1.chr26 10669123 10 - 41009621 ATAGCTATAT a score=0.0 s hg17.chr13_random 105652 22 + 186858 atatccctatatatatagctga a score=3663.0 s hg17.chr13_random 105652 20 + 186858 atatccctatatatata--gct s panTro1.chr12 22808605 22 - 117159028 atatccctatatatatatagct s mm5.chr10 55193844 20 - 130633972 ATATCCTTATACATATA--ACC a score=191.0 s hg17.chr13_random 105672 2 + 186858 ga s panTro1.chr12 22808627 2 - 117159028 ga a score=6355.0 s hg17.chr13_random 105674 49 + 186858 gaggtggcaggtgccccctggagttgggcaatgacccctcgcacaaccg s panTro1.chr12 22808629 49 - 117159028 gaggtggcaggtgccccctggagttgggcaatgacccctcacacaactg s canFam1.chr26 10669133 43 - 41009621 GAGCTTGCAATGACCACATGG---TGGACA---CCTCCTTGCACAACTG a score=25306.0 s hg17.chr13_random 105723 233 + 186858 GCCCTGC-CCTAC-CCCAATCCACAGCCAC-AAACAGAACCCAGGAGCGAG-----------------GCAAGCATGGCCCAAGG-----------------ACACAGGGTCCCCCAACCCC-ATCACAGCTCTGGCTCTACTCCAGAGCTGACCCCCCACCCC-------CACTCAGGGCTGCCAGATCCTCCAGGGCCT-GTTTGTTCATGCTTCACTCTTTCCTCTTAATT--CCAAGAAGCCAC---------------GGCTCTCTCAAGAGCTTCTTCGCACAAGTCAGG----- s panTro1.chr12 22808678 233 - 117159028 GCCCTGC-CCCAC-CCCAATCCACAGCCAC-AAACAGAACCCAGGAGCGAG-----------------GCAGGCATGGCCCAAGG-----------------ACACAGGGTCCCCCAACCCC-ATCACAGCTCTGGCTCTACTCCAGAGCTGACCCCCCACCCC-------CACTCAGGGCTGCCAGATCCTCCAGGGCCT-GTTTGTTCATGCTGCACTCTTTCCTCTTAATT--CCAAGAAGCCAC---------------GGCTCTCTCAAGAGCTTCTTCGCACAAGTCAGG----- s canFam1.chr26 10669176 218 - 41009621 AACCTGC-CTCACGCCCCATTC-CAGCCACAAAACAGAGCCCA-CAGAGGG-----------------GCAAGCACGGCCAGGGG-----------------ACACA--GTACCTCAGCCCCTGTCACAGGC----------------------------CCCT-------CACTCTAGGCTGCTGGGTACTCCTGGGCCTCAGTTTTCCGTGCTGCACTCTTTCCTCTTAATT--CCAAAAGTCCACTTCCCAGGTGTCAGTGGCTTCTTCAAAGACTTCCT--CAGAAGTCCAA----- s danRer1.chrNA 179040089 264 - 390413307 GCCCTCCACTTAG-GCCACTCT-CAGCCAA-ACAAACTACCCAGGGGTCCACCTCTCTCCCTGCACTTGCAGTATAGGCCCCAGGGTGCCCCCTGGCACTCCACCTAGGGGCCTAAGACCCC-AGCA-AGCT--------ACACAGGGGTCCACCTCTCTCCCTGGACTGGCAGTTAAGGCCCCAGGGTACCCCCTGACC--GTCCACCTAGGTTCTTCTTACCCCAGCAAGCTACCCAGGGGTCCAC---------------ATCTCTCCCTGGA-----CTTGCAGAAG--AGGCCCCA a score=6881.0 s hg17.chr13_random 105956 173 + 186858 TGACTCCCCCCAGCCCTCCTTCACCC-----------ACCCGCATACCT--------------CA-------------CTCAAACTCACATAAA-CTCGTCAGCCAAG-AAACAGAGGCCCC---------------------CCC------------AGCCCAGACCCAGTCAGATAAAGAACCCAGGGCTCTCCCCTTCTGTGGGATCCCT----CTGCAGGATGCGCCCACACAAGTCTTGC-CCCCT s panTro1.chr12 22808911 173 - 117159028 TGACTCCCCCCAGCCCTCCTTCACCC-----------ACCCACATACCT--------------CA-------------CCCAAACTCACATAAA-CTCATCAGCCAAG-AAACAGAGGCCCC---------------------CCC------------AGCCCAGACCCAGTAGGATAAAGAACCCACGGCTCTCCCCTTCTGTGGGATCCCT----CTGCAGGATGCGCCCACACAAGTCTTGC-CCCCT s mm5.chr10 55194115 155 - 130633972 TGACTCACCACAAAGGTCTCTGCCCC-----------ACCCCCAC---------------------------------CCCAAGCCCAGAGAGG----GGCAGGCATG--GATGGAGGGCAC---------------------AGT------------GCCTCCTGTCTGGTACGAAATAG-------GGCTCTGCCTACCTGTGTGAACC------CAGGGGGACCAGGGCACAGGAGCCTGCCGCCCCG s canFam1.chr26 10669394 192 - 41009621 CAGCTTCATGTGACCCTCC---ACCC-----------ACCC-CACACCTGTGGCACAGTGAGCCAGAAAGCCTGGAGCCATAGCCTCAAACCGC-CTTACCAGACAAAAAAGCACAGCACCC---------------------CCCAGCCTCCACTCAAGCCTAGACCTGGTCAGAAAAAG-----------------ACCTGAGCAACCCCT----CTGCAGGATCCAGTCACACCAGCCCGGT-CTCCT s danRer1.chrNA 179040353 195 - 390413307 GGGTGCCCCCTTGCCCTCC---ACCCAGGGGCCTCTGACCCCCGCAAGT--------------TA-------------CCCAAGGGTCCACAACTCTCCCTGGACTTG-CAGTAGAGGCCCCTGGGGGCCCCTTGGCTCTCCACCT------------AGGCCACTCTCAGCCAAACAAACTACCCAGGGCTCCACCTCTCT-------CCCTGCACTTGCAGTATAGGCCC-CAGGG----TGC-CCCCT a score=213856.0 s hg17.chr13_random 106129 1041 + 186858 TCACCCCGAagtgcaactcactcccactgcacgggtacataaaccgaggctcggagaggaagaggaactcctctagagcgcagcaagcatatggcagagctgagaatggaactcaggcctccagacactcatgggagtgccctgaccTGAGCTTCCCC-ACCTATGATGTCCACCAGCTCAGAGAGGGTGTGTGGCGCCTCTGG-GTCACACAGCA-CTGGGGCGCAGCCAACTGCTCTCACTTCTGGGCTCACCCGACGCCCGGTCTGGTCGTCCAGCAGCACACCAAAACCAAGCTAAG------ATTCCCTGCTGTGACCCAGCTCCT-CCTTCCCTCCCCCAGTGGCCTGGGGGTGGGGCGGGGGG-AGGGGAGGCTTTAAAGGCACAGGAACTGCTGCAGGTGGGATGTGGGCTGGCTCCTGGTCCCATCCCTGG-GGCTGTGTGATCTGGGACCGCTGCAGGCTGCAGGTCTCTCTGAGCCCGGTGGGGTCTCAAACCCTGAATGAGAGACCTGAACTCTGAAAGCCTCGGTGGGGCTGAATGAGGCTGGGTTTC--AGCGGGAGGCAGATTACACCAAAGGTTCCCTGGGAGATGGGG-----------------------------------CCACAGAGCTGGGCTGCAGCCAGATGCCCATGCC--AGGAGGAGCTGGAGA-TGTAAGCATCTGAGGCCCCACAAGGTCTGAGGAGCCT-AGATCACCTCTACAACC-CCAGGGCAGGGGATGCTTCTCCTAACAGGTCCTCTCCCCAACTTTCAGGGCTATAGGCTGGGCTCTAGGAGATGTCACTCCAAGGACCCTGCTCACCTGGACTGAACAGAGTCACATG-ATCCAGGAGGGTCCTTCCTCAACCCCCAGTTTCAGGGGTCTGAGCAGACAGGCTGACCGAG-------------GACCCCAGGCAACGGAAGCAGGGGGATGAGGCCCATCTGTCCATCATGCCCTCACCTGCTCTGCCCCATTCAATGAGAAGAGATGGGGTGGGTGCCCCCACAGGGCTGGCAGGCCGAAGCCTCTAAGCCCTCAGATCAAGGTCCACACATGGTCTGCAGCCTGCCAGA s panTro1.chr12 22809084 1042 - 117159028 TCACCCCGAagtgcaactcactcccactgcacgggtacataaaccgaggctcagagaggaagaggaactcctctagagtgcagcaagcacatggcagagctgagaatgggactcaggcctccagacactcatgggagtgccctGACCTGAGCTTCCCC-ACCTATGATGTTCACCAGCTCAGAGAGGGTGAGTGGCGCCTCTGG-GTCACACAGCA-CTGGGGCGCAGCCAACTGCTCTCACTTCTGGGCTCACCCGATGCCCGGTCTGGTCGTCCAGCAGCACACCAAAACCAAGCTAAG------ATTCCCTGCTGTGACCCAGCTCCT-CCTTCCCTCCCCTAGTGGCCTGGGGGTGGGGTGGGGGGGAGGGGAGGCTTTAAAGGCACAGGAACTGCTGCAGGTGGGATGTGGGCTGGCTCCTGGTCCCATCCCTGG-GGCTGTGTGATCTGGGACAGGTGCAGGCTGCAGGTCTCTCTGAGCCCGGTGGGGTCTCAAACCCTGAATGAGAGACCTGAACTCTGAAAGCCTCGGTGGGGCTGAATGAGGCTGGGTTTC--AGCGGGAGGCAGATTAGACCAAAGGTTCCCTGGGAGATGGGG-----------------------------------CCACAGAGCTGGGCTGCAGCCAGATGCCCATGAC--AGGAGGAGCTGGAGA-TGTAAGCATCTGAGGCCCCACAAGGTCTGAGGAGCCT-AGATCACCTCTACAACC-CCAGGGCAGGGGATGCTTCTCCTAACAGGCCCTCTCCCCAAATTTCAGGGCTATAGGCTGGGCTCTAGGAGCTGTTACTCCAAGGACCCTGCTCACCTGGACCGAAGGGAGTCACATG-ATCCAGGAGGGTCCTTCCTCAACCCCCAGTTTCGGGGGTCTGAGCAGACAAGCTGACCGAG-------------GACCCCAGGCAATGGAAGCAGGGGGATGAGGCCCATCCATCCATCATGCCCTCACCTGCTCTGCCCCATTCAATGAGATGAGATGGGGTGGGTGCCCCCACTGGGCTGGCAGGCCGAAGCCTCTAAGCCCTCAGATCAAGGTCCACACATGGTCTGCAGCCTGCCAGA s mm5.chr10 55194270 918 - 130633972 TTATCCTGGAGTGTGGTGCACTCCTGTTGCGCAGGTGGCTACACAGAGACTCTGGGAGGATCACCAGAGCCTCTGGAATG------GCATGGGACAGAACTGAGGAACAGAACCAGGTCTCCACACATTCTTAGGTGCCCCCAAGTCTATTTGCCCCC-ACCTACGATGTCCAGCAGCTCAGAGACGATGAGGAGGGCTTTTGGTGTCATTCAGCAGCTGGGGCACAGCCAG--ACACGTGCTGCTGCGTTCCCTC------------------TCAGCTCCACACTTGCGGAAGGCTAAGTCCCC-ATCCCCAGCAGTGACCCAGCTCCTCCCTTCCCTCCCCTAGCTGGCTTGGGGTG-----------GGCGGAGGCTTTAAAGGTACAGAAACGACT-CAGGTAGCAT-------------TGGTA----ACCTGG-AACAGCA-----TCGGAGAACTCAGAGCTGCAGG-----------------------CAGTCCCCGAG-AAGAAACCCGAGCCAGGACAGTCTAAGCGGAGCTTAAAGAAGCTGTATATCAAAGAGGAGGGATGATT------TAGGCTCAATAGGGGTCA---------------------------------------TACGGAGCCAGAGTGCAGCCACATGCCT-TGCCCTAGTAGAGGTTATGGC-TGAAAGCTTCAGAGGTCCTACAAGATCCAAGGAGTCT--GTTCCCCTGAGTGATTGTCAGATCGAGG--------------CTGGCCCTCT---AGACTATCTGGGCCACAGA------GCTGGGAGGGGCTACTCCAAGTATTTCGGTTAACTGGACTGAAGGAAGTCTCACGCGACCTAAAAAGTCTTCCCTAATTCCTCAACTTTCTAGATAAGGGTAGTCTGGCAGTCTGTGTGTGTGTGTGTGTGTCCCTTAGCAGGGGAAGTGGGGGCAT------------TTCTAAGTGCTCTAAACTTCTC-----------ATTGAATGAGATAGGGTCAGT-TTCTAACAAAGGGGGCTATCCCAAGCTTCTAGGCCTCAAGATC--------CTCATAGTCTATTGCCTGTCAGA s canFam1.chr26 10669586 1010 - 41009621 TCaccctgaaggtcagctcactcccattactcaggtgcataaactgaggct-ggagaggaagag------------------gccagcatctggcagagctggaactggaatacaggcttcca-acacttccggGAGGCCCTAAGCCTGAGCTACCCCGACCTGCAACGTCCAGTAGCTCAGAAAGGATGAGCTGTACTTTGGG-GTCACACAGCA-CTGAGGCACAGCCAGATGCCCCTCCT----GGCTCACCTGGCTCCAGGGCTGGTCTTCC-TCTGCTC-TCAGCACAGAGCTGAGTCCCCAGTGCCCAGCTATTACCCAGCTCCTCCCCTCCCTCTCTCTGCCGGCT-AGGGTG-----------GAGGGAGGCTTTAAAGGCACAGGAACCTTTCCAGGTGGGAACGAGGCTGGTTCCTAGTCCTGTCCCTGGAGGCTGTGT------------------------GGCCTCTTTGAGTCCCATGGAGTCCCTAACCCTGAATGCAAGGCCTGAGCTTTGAAGGCCTCAGTGGGGCTAAATGAGGCTGGGCTTC--AGACAGAAACAGGTCAGGCC-AGGGGTCCCTGGGAGCAGGTGGGCTCCCCTGAACTTACGATGTCCAGACAGAAGTCTCACAGTGTTGGGATATAGCCAGATACCCACTCC--ACTGGGGTTTTGGGACTGTAAGCATCTGAGGCTCTAGCAGACCTGAGGAGCCTAAGATTCTCTCCACAATT-CTGGAGTAGGGGATGCTCCTCCAAATATGCCCTGTCCCTGACTCTTGGGGCTACAGGTGGGTGTCTAGGGGCTGTTACTTCAAGGACCCTGGTCACCTGAACTGAAGGGAGTCCCATG-ACCCAGGAGAG-CCTTCCTCATCCCCTAAGTTTCTAGG---AAGCAGGAAGACTAATGGAG-------------GACACATGGCAGTGAGGGCAGGAG-ATGCGGTTGC----CTGCTCATGCCCCTCCCTGCTCTGGCCT-----ATCAAATGAGATAGGGTGGGTGCCCCCAC-GGGGTGGCAGGCCCGAGACTCCTGTGTCTCTGAAAGAGATCCACTTACAGCCTGCTGCTTGCCAGA a score=3370.0 s hg17.chr13_random 107170 16 + 186858 ATTGTCACTCTTAGCA s panTro1.chr12 22810126 16 - 117159028 ATTGTCACTCTTAGCA s canFam1.chr26 10670596 16 - 41009621 ATTGCCACTACCAGCA a score=11690.0 s hg17.chr13_random 107186 54 + 186858 AGGCTAAGAGTGGCAACACAGCACCCTCCATGGCCCATCAGGAAGGACAGGCag s panTro1.chr12 22810142 54 - 117159028 AGGCTAAGAGTGGCAACACAGCACCCTCCATGGCCCATCAGGAAGGACAGGCag s canFam1.chr17 56832024 50 + 66886099 agaCTTGAGGTGGCAACATAGCACCC----GGGCCCATCAGGAAGGACAGGCAG a score=1097.0 s hg17.chr13_random 107240 13 + 186858 agacaacaacaaa s panTro1.chr12 22810196 13 - 117159028 agacaacaacgaa a score=16767.0 s hg17.chr13_random 107253 91 + 186858 ttgtagg-gatgtgagaatgagggatggagaggcc-cttaaggctacactatgtgagaagttgaaagaactagagatctttaacagagaaggg s panTro1.chr12 22810209 91 - 117159028 ttgtagg-gatgtgagaatgagggatggagagggc-cttaaggctacactatgtgagaagttgaaagaactagagatctttaacagagaaggg s canFam1.chr17 56832088 93 + 66886099 CTGCAGGCTAAGCAGGAATGAGGGATGGAGAGGGAGCTTAAGGCCACATTGTGGGGGGAGTTCATAGAACTAGAGCTCTTAACAAGAAAAGGG a score=1501.0 s hg17.chr13_random 107344 16 + 186858 gcatacatttcatgta s panTro1.chr12 22810300 16 - 117159028 gcatacatttcatgta a score=97836.0 s hg17.chr13_random 107360 633 + 186858 tttgaaaggaaatgacgcagacttctctttggtttttccatgggcagatctcaaa-----agggaaattacagg-aaagtgaacttttcaacaa-tcagagctgcccaaaagtg---------gaactgaggcttgtgga-gtgagtagctctccct-ccctggaagcattctggcagaggttgagtgccacctgtga-------gggaGAGGAATAAGGGCTACA-CCACGGGGTC-----GAGGAAGGGCCAGAGGAGGAATGATTCAGTTTGGAGACAGGAAAGTCT--TGTCTGGGCTGGGCTGGGAGCTAAGAAAGAAGGGGGATGCAGATGCATAAGACCAGAAAATGCCTTCTAGGTAGGAACTCTGGGTGTGGAGCTGGTGTAAGCCCAAGATTCAGGGTGCAAACTGCAAACCCAGAAGAAGATTCAGGAGCTGCCATGAACCCTGCCTTGCCACATTTTGCTAACCACAGCTGCC-------CTGCTCCTTGGTG---AAGATGCTATCCACAGAAGCAGAGTCAAGGATGCTTCCATGAGTCTGCCATCAGCAGCAGGACCCACTGCAGGTAAAATGGATGGGATTGCAGTGTGCTAGGGTGATGGTCTGTGTACCTGCACCCACACTCAGCATGCACCTTGCAGACAGTCTCTCCACACCAGCC s panTro1.chr12 22810316 635 - 117159028 tttgaaaggaaatgacgcagacttctctttggtttttccatgggcagatctcaaa-----agggaaattacagggaaagtgaacttttcaacaaatcagagctgcccaaaagtg---------gaactgaggcttgcaga-gtgagtagctctccct-ccctggaagcattctggcagaggttgagtgccacctgtga-------gggaGAGGAATAAGGGCTACA-CCACGGGGTC-----GAGGAAGGGCCAGAGGAGGAATGATTCAGTTTGGAGACAGGAAATGCT--TGTCTGGGCTGGGCTGGGAGATAAGGAAGAAGGGGGATGCAGATGCATAAGACCAGAAAATGCCTTCTAGGTAGGAACTCTGGGTGTGGAGCTGGTGTCAGCCCAAAATTCAGGGTGCAAACTGCAAACCCAGAAGAAGATTCAGGAGCTGCCATGAACCCTGCCTTGCCACATTTTGCTAACCACAGCTGCC-------CTGCTCCTTGGTG---AAGATGCTATCCACAGAAGCAGAGTCAAGGATGCTTCCATGAGTCTGCCGTCAGCATCAGGACCCACTGCAGGTAAAATGGATGGGATTGCAGTGTGCTAGGGTGATGGTCTGTGTACCTGCACCCACACTCAGCATGCACCTTGCAGACAGTCTCTCCACACCAGCC s canFam1.chr17 56832379 642 + 66886099 TATGTATATATATGACCCaaacttcttctgggttgttccaggagcaaatgtagaatctggaggggaattacatg--gaggggatttttcaacaa-gtaggactgccctgtggtggatggaacagaatggggtcctgtggaggtaggaagtgctccctccccctgaaacattccagcagaagTCAGGGGCCATCCCTGGTCCGTCTGGCAGCAGAATGAGGGCTGCACCCACAGGCTCTGAGTGGGCAGGTGGTGGTGGGGGAG-GGTCAACTTTGGAAACAGGAAAGGCTACTCCCTGGGCTGAAACGGGTGATAAGGAAGAAAGGGGAAGCAGAGGAGGGAGACCAGAAAGCACCTTTCAGACGAGAACGCTGGGTATGGAGCTGGCACCAGCCCGAGATGTGGGGTGCCACCTGCAAACCCAGGAGAAGATCCAGGTGCCGCCGGGGACCCTGCCGCGCCGCCTCCCGCTCAGCACGGCCGCCCCTTGGGCTTCTGCCTGGTGAGAAAGATGCTGCCCCTAACAGCAGAGTCGAGGGTGCTTTCCTGAGGTTGTCCTCGGCACCAGAATGCACCGCAGCCAAAGCCAGCCAAAGC----CGTGCTAGGACCCCGGCCTGTGCGCCTGCCCCCACCCCCAGC-----CCTGGCC--------------------- a score=5834.0 s hg17.chr13_random 107993 26 + 186858 CCACAGAGCCCCACCCACCCCCAGGC s panTro1.chr12 22810951 26 - 117159028 CCACAGAGCCCCACCCACCCCCAGGC s rn3.chr2 61740101 24 - 258222147 CCACAGAGCTCC-CCAAGCCCTAGA- s canFam1.chr17 56833021 24 + 66886099 CGGCAGAGCCC--GCCACCCCCACGC a score=4484.0 s hg17.chr13_random 108019 21 + 186858 AG--TCTCTGCACTA-AACCCACT s panTro1.chr12 22810977 21 - 117159028 AG--TCTCTGCACTA-AACCCACT s rn3.chr2 61740125 18 - 258222147 -----GTTTGCAGGA-AACCCACA s canFam1.chr17 56833045 23 + 66886099 CGTCTCTCTGCGCTA-AGCCCACT s galGal2.chr1 102118780 22 - 188239860 AG--TCAATGCTCTATCACCCATA a score=350.0 s hg17.chr13_random 108040 2 + 186858 GG s panTro1.chr12 22810998 2 - 117159028 GG s rn3.chr2 61740143 2 - 258222147 GG s canFam1.chr17 56833068 2 + 66886099 GG s galGal2.chr1 102118802 1 - 188239860 G- s danRer1.chr10 18856303 2 - 25436222 GG a score=6419.0 s hg17.chr13_random 108042 11 + 186858 CCCAGGACAGC s panTro1.chr12 22811000 11 - 117159028 CCCAGGACAGC s mm5.chr3 59188071 11 - 160575607 CCCATGACGGC s rn3.chr2 61740145 11 - 258222147 ACAGTGATGGT s canFam1.chr17 56833070 11 + 66886099 CCCAGGACGGC s galGal2.chr1 102118803 8 - 188239860 ---AGGACCCC s danRer1.chr10 18856305 11 - 25436222 GCCAGAGCAGA a score=287725.0 s hg17.chr13_random 108053 208 + 186858 CGTGCCCTGCGGCCTTACCTGGCTGTTTCACAGTGACTTCTGTGCGCCCAGAAACCTCCTCTGCCAGCTTGTACCAGGCGTAGTTGGGGCTCAGCAGCCACTACTCCATGTGGCAGTAGTAGCTGCCGCTGTC--GCTGACCTCGGCTCTCTGGACGGTGAGGCTGAACAGGTCCCCCGACACATGCCTCTCAAACTGGAGCCTGGCTCT s panTro1.chr12 22811011 208 - 117159028 CGTGCCCTGCGGCCTTACCTGGCTGTTTCACAGTGACTTCTGTGCGCCCAGAAACCTCCTCTGCCAGCTTGTACCAGGCGTAGTTGGGGCTCAGCAGCCACTACTCCACGTGGCAGCAGTAGCTGCCGCTGTC--GCTGACCTCGGCTCTCTGGACGGTGAGGCTGAACAGGCCCCCCGACACATGACTCTCAAACTGGAGCCTGGCTCT s mm5.chr3 59188082 208 - 160575607 CACACCTTCCATTCTTACCTGGCTGCTTCACAGTGACCTCTGTGCGCCCTGAAACCTCCTCGGCCAGCTTGTACCAGGCATAGTTGGGACTCAGCAGCCACTCCTCCACGTGGCAGTAGTAGCTACCGCTGTC--GCTGACCTCGGCTCGCTGCACAGTGAGGCTGAACAGGCCCCCCGACACATGCCTCTCGAACTGCAGCCGGCCTCG s rn3.chr2 61740156 208 - 258222147 CACACCTTCCAGTCTTACCTGGCTGCTTCACGGTGACTTCTGTGCGCCCTGAAACCTCCTCGGCCAGCTTGTACCAGGCATAGTTAGGACTCAGCAGCCACTCCTCCACATGGCAGTAGTAGCTGCCACTGTC--GCTGACCTCAGCTCTCTGCACAGTGAGGCTGAACAGGCCCCCTGACACATGCCTCTCGAACTGCAGCCGGCCTCG s canFam1.chr17 56833081 208 + 66886099 TCCACCCTGTGTCCTCACCTGGCTGCTTCACAGTGACTTCTGTGCGCCCTGAAACCTCCTCGGCCAGCTTGTACCACGCATAGTTGGGGCTCAGCAGCCACTCCTCCACGTGGCAGTAGTAGCTGCCGCTGTC--ACTGACCTCGGCTCTCTGCACGGTGAGGCTGAACAGGCCCCCGGACACATGCCTCTCGAACTGGAGCCTGGGCCG s galGal2.chr1 102118816 205 - 188239860 CACACTGTGCAG---TACCTGGCTGCTTGACGGTGACCTCAGTCCGCCCCGACACCTCCTCCGCCAGCTTGTACCAGGCGTGGTTGGGGCTGAGCAGCCACTCCTCTACATGGCAGTAGTAGCTGCCGCTGTC--ACGGACCTCAGCCCGCTGGACCGTCAGGCTGAAGAGCCCTCCCGACGCTGAGCGCTCGAACTGCAGCCTGCCCCG s fr1.chrUn 163499034 204 - 349519338 CGCGTCCTG-GACTTTACCTTGTTGCAGCACGTTGACGATTGTGAACCCAGAGTCGTTGAAGGTCAGACGGTACCAGGCGCTGCGGGGGTTGAGCAGCCACTCCTCCACATGGCAATAGTATCGGCCGGCGTCCGACAGAC--GAGCGCCGCGAATGGTCAGACTGTACTGGT---CAGAGGCCATCCGCTCAAACTGCAGGCGGGACTT s danRer1.chr10 18856316 205 - 25436222 AATAAGTGACCCTCTTACCTGGCTGTCTCACAGCAACATGTGTGAAGCCAGAGGAGTCCTGTGCCAGCCGGTACCACTCTCCGTCAGGGTCCATGAGCCACTCCTCCACCAGACAGTAGTAAACTCCAGAGTC--GCTGGTCTCTGCGCGGTGCAGTGTGAGGCCGTACAATC---TAGGAGAAAGTCTCTCTGACTGCACACGGCTGCG a score=318750.0 s hg17.chr13_random 108261 247 + 186858 CAGGCCCTCCTCCTCCACGTAAGTACCGTATTCGAAGG---CGGAGTTGTGGGTGGTCTTCAGGATAAGCTTGCC------GTTGGCATCTGA---GGGCTTGTG---GACGTACCAGAGCACCGCAAAGTGGGAGTTCTGGCTGGTCTGAGACTTGACTGAGCAGTTCAGCTGAATGGGCTTGTTTTCCACCAGGGTGAGGGTCCTCTTCGATTTGCTCACCTGCAGCTTTGTCACTGCAAAGGAA----AGGGG--AACACAGGAA--- s panTro1.chr12 22811219 247 - 117159028 CAGGCCCTCCTCCTCCACGTAAGTACCATATTCGAAGG---CGGAGTTGTAGGTGGTCTTCAGGATAAGCTTGCC------GTTGGCATCTGA---GGGCTTGTG---GACATACCAGAGCACCGCAAAGTGGGAGTTCTGGCTGGTCTGAGACTTGACTGAGCAGTTCAACTGAATGGGCTTGTTTTCCACCAGGGTGAGGGTCCTCTTGGATTTGCTCACCTGCAGCTTTGTCACTGCAAAGGAA----AGGGG--AGCACAGGAA--- s mm5.chr3 59188290 248 - 160575607 CAGGCCCTCCTCCTCGGCGTAGGTCCCGTACTCGAAGG---CCGAGCTGTGCGTGGTTTTGAGGATGAGCTTGCC------GTCCGCGTCCGA---GGGTTTGTG---AACATACCACAGCACGGCGAAGTGCGAGTTCGGGCTGGTCTGGGACTTGACTGAGCAGTTCAGCTGAATTGCCCGGTTTTCCACCAGGGTGAGCGTTCTCTTCGACTTGCTCACCTGGAGCTTTGTCACTGTGAAGGGA----AGGAG-TGACATAAGAG--- s rn3.chr2 61740364 249 - 258222147 CAGGCCTTCCTCCTCCGCATAGGTTCCATACTCGAAGG---CTGAGTTGTGCGTGGTTTTGAGAATGAGCTTGCC------GTCCGCGTCCGA---GGGTTTGTG---AACATACCACAGCACGGCGAAGTGCGAGTTTGGGCTGGTCTGGGACTTGACTGAGCAGTTCAGCTGAATTGGACGATTTTCCACCAGTGTGAGGGTTCTCTTTGATTTGCTCACCTGAAGCTTTGTCACTGTGAAGGGA----AGAGGGCAACTTAGAAG--- s canFam1.chr17 56833289 247 + 66886099 CAGGCCCTCGTCCTCGGCGTAGGTGCCAAACTCGAAGG---CGGAGCTGTGGGTGGTCTTCAGGATGAGCTTGCC------GTCGGCGTCCGA---GGGCTTATG---CACGTACCAAAGCACCGCAAAGTGGGAGTTCGGGCTGGTCTGGGACTTGACGGAGCAGTTCAGCTGGATGGGCCTGTTCTCCACCAGGGTGAGGGTCCTCTTGGATTTGCTCACCTGCAGCTTTGTCACTGCAGAGGAA----AGAGG--GCCACTTGAG--- s galGal2.chr1 102119021 251 - 188239860 CAGCCCCTCCTCCTCGGCGTAGGTGCCGTACTCGAAGG---CTGAGCTGTGGGTGGTCTTCAGGATGAGCTTGCC------GTCGGCGTCGGA---GGGCTTGTG---CACGTACCACAGCACGGCAAAGTGCGAGTCGGGGCTGGTCTGGGATTTCACTGAGCAGTTGAGCGGGATGGGGCGGTTCTCCACCAGGGTGATGCTCCGCTTCGACTTGCTCACTTGCAGCTTGGTCACTGCCAGGGGGAGACAGAGG--AGGGTGAGAA--- s fr1.chrUn 163501438 251 - 349519338 CAGCCTCTCTTCGTCCGCGTAGGCGCCGTACTCAAAGGTCCCCGAGC---GTTCAATTCGCAGCAGGAGCT---C------ATCTGCCTCCGACCCGGACGTGTGTCTCACATACCACAGCACAGCATGCTGGGAGTCCTGGCTGGTCTGGGCAGAAATGGAGCAGTTGATGCGGACGCGGCTGTCCTCCAGGTACGCCTGCGACTGGTTGGTCTTCTGAACGCGTAGCTTGCTCTCTGCAGAGAAT---TAGGAG--AGAACGGAGA--- s danRer1.chr10 18856521 250 - 25436222 CAGACGCTCTTCTTCTGCATATGCACCATACTCAAATG---CCCCTGTGTGTTCAATCTTCAGCAGAAGCTCATCCGGCTGACCCGCTTC------AGCCTTGCG---GGCGTACCACAGCACTGCATGCTGTGAGTCCAGGCTGGTCTGAGAGGAGACAGAACAGTTGACCCGCACACGACTGTCCTCCAGAAACTGAAGACTCTGATTGGACTTGTGCACCTTCAGTTTACTCACT---AAAGGA----GGAGG--AAAATAAGAGGAA a score=-4403.0 s hg17.chr13_random 108508 6 + 186858 TCACCA--- s panTro1.chr12 22811466 6 - 117159028 TCACCA--- s rn3.chr2 61740616 5 - 258222147 -TGACA--- s canFam1.chr17 56833544 6 + 66886099 CTGCCA--- s galGal2.chr1 102119275 1 - 188239860 -----G--- s fr1.chrUn 163501692 6 - 349519338 TGAAGA--- s danRer1.chr10 18856771 6 - 25436222 ---ACATTA a score=566.0 s hg17.chr13_random 108514 5 + 186858 CAGAC s panTro1.chr12 22811472 5 - 117159028 CAGAC s rn3.chr2 61740621 5 - 258222147 TGGAG s canFam1.chr17 56833550 5 + 66886099 CCTGC s galGal2.chr1 102119276 5 - 188239860 TGGGG s fr1.chrUn 163501698 5 - 349519338 CAGAC a score=163.0 s hg17.chr13_random 108519 53 + 186858 TCCCAGAAACGTGGCCCA----TCCACCTCG------AGGCTCTGAGTCAGTTTTCCTCCAGC s panTro1.chr12 22811477 53 - 117159028 TCCCAGAAACGAGTACCA----TCCACCTCC------AGGCTCTGAGCCAGTTTTCCTCCAGC s rn3.chr2 61740626 52 - 258222147 CCT---GGACCTGTCCCAGG--CTCACTTCT------AGGCTGGGAGACTGGTTCTGTCCAGC s canFam1.chr17 56833555 46 + 66886099 CCCCTTGGGCATATGCCAGTCCCCGACCTC----------CCCTG---CAG----CCTCCAGC s galGal2.chr1 102119281 58 - 188239860 CAT---GAACACGGAAGAGAAACTCACCTGTTTGGGGAGGCCCCGAG--AGCTCTCCCCTAGC a score=4443.0 s hg17.chr13_random 108572 112 + 186858 A--CAGTTCCTGGGGGATTTAACACC-----GACTGGCTTCAGTGTGAGGAAGGCAGCACGGAGCCCAGGCCACCGCTAAACATCCTTCCCTGTCTCCTCCTTGCCATGTGCCTGGCTT s panTro1.chr12 22811530 112 - 117159028 A--CAGTTCCTGGGGGATTTAACACC-----GACTGGCTTCAGTGTGAGGAAGGCAGCACGGAGCCCAGGCCACCGCTAAACATCCTTCCCTGTCTCCTCCTTGCCATGCGCCTAGCTT s rn3.chr2 61740678 56 - 258222147 A------------------------------------------------GGGAACAGCATG--------------ACTGAGTATCC-TCAAAACCTCCCCAGTATCAGTCGCCCATCTA s canFam1.chr17 56833601 108 + 66886099 CTCCAGCTCCAGGAGGACAGGCCTCCTCTGAAGTGGGGATCGGTGTGAGGGAGGTGGTGTAGAGCC--GGCCTCACCCCAACCTCC--------CTCCACC-TGCCTCACCCCTCACTC a score=220846.0 s hg17.chr13_random 108684 1132 + 186858 AGGCCTTCACCATCTCTCCCCTATCCACTGCCTGCACAGCCCACCATCACAGGGCCTCTGagggtgatcctgct--gaaatacaaatctagctatatcaggtctctgcttgaaaagtttaatggctctgaactacctacgggctagagagaaa--caattccttttcacagcacaaagtcccttcaggatctggcctgcacccaagtgtcctgactcatctctcacgactca-ccctcaggcacc----ctccacaggcgcacgcccc-tggtgcagtttccctgagtgctggcctttgcccttgctgtcctctctgcctgTCTCCTTCTGCCACCTCCCACCCTCACCCTTCTCT-----CCACTTATTCC--------------TCATTCCCATCCCCCTGGGCTCCATACCCTTCCTCA-GCA------------CCCTCTAT---------ATATCTCTGGGCTGTGTGTCTTCACATCTCTCTCCCATATCCTAGAT-GGTGAGCTCCCCCAGGGCAGGGATCAAGCTCTTtccactcaatcaaccagtatttacggagtgcccactcagtttcccaca-ggatgctaagtgctggggatgccctgaagagtaagccagagtcccagccctcatggggcggacggcctagcggaCATTCttatcgctgcacccccagagcctagcacaacacctgggc-caggaaagcatttga--------tcagtgtttgctgaaataggtgaatGAGTGGGTGAGCGAATGAGAGCACGTTGGAGAAACACGGCAACAGGTAATTAGAGGATGC---TGCGGGGGTGGGGAGGGGGGGCTTCCTCTAGGGGAGTGAG--AGAGAAGGCTGAGAAGACAGTAA---ACCACGGGACAAGGCAAAGCC-AACTGCAATCCTCC-CTTCTCCTCACTGTCCCGCTCCAAAAACAGACAAGAGGGCAGCCT-------------GTGGAGCGC---CTCCCCA-GCAGCTAAT-------TAATGATGATGTTCACCTTGCCAGTGGCAAGAAGCCAAGGTCTAATGAAATCCATGTTA-GGAAGGTGATTTGAGATCTCACCCACCCCATCATCATT--AACCTTGGCTCTGCATTCCCCCACCCACGCCTCTCCTGCTACTAAAAATG-------------AAAAAAAAAAAAAAAACAATTCTAAGTTCCTCTTAGGGAACTAATAGCACAAGCATTGTTCCACCTC- s panTro1.chr12 22811642 1150 - 117159028 AGGCCTTCACCATCTCTCCCCTATCCACTGCCTGCACAGCCCACCATCACAGGGCCTCTGagggtgatcctgct--gaaatacaaatctagctatatcaggtctctgcttgaaaagtttaatggctctgaactacctacgggctagagagaaa--caattccttttcacagcacaaagtcccttcaggatctggccttcacccaagtgtcctgactcatctctcacgactca-ccctcaggcacc----ctccacaggtgcacgcccc-cggtgcagtttccctgagccctggcctttgcccttgctgtcctctctgcctgTCTCCTTCTGCCACCTCCCACCCTCACCCTTCTCT-----CCACTTGTCCC--------------TCATTCCCGTCCCCCTGGGCTCCATACCCTTCCTCAGGCA------------CCCTCTAA---------ATATCTCTGGGCTGTGTGTCCTCACATCTCTCTCCCATATCCTAGATGGGTGAGCTCCCCCAGGGCAGGGATCAAACTCCTtccactcaatcagccagtatttacggagtgcccactcggtttcccacagggatgctaagtgctggggatgccctgaagagtaagccggagtcccagccctcatggggtggactgcctagcggACATTCttatcgctgcacccccagagcctagcacagcacctgggc-caggaaagcatttga--------tcagtgtttgctgaaataggtgaatgagtGGGTGAGCGAATGAGAGCACATTGGAGAAACACGGCAACAGGTAATTAGAGGATGC---TGCGGGGGTGGGGAGAGGGGGCTTCCTCTAGGGGAGTGAG--AGAGAAGGCTGAGAAGACAGTAA---ACCACGGGACAAGGCAAAGCCTAACTGCAATCCTCCTCTTCTCCTCACTGTCCCGCTCCAAAAACAGACAAGAGGGCAGCCT-------------GTGGAGCGC---CTCCCCA-GCAGCTAAT-------TAATGACGATGTTCACCTTGCCAGTGGCAAGAAGCCAAGGTCTAATGAAATCCATCTTA-GGAAGGTGATTTGAGATCTCACCCACCCCGTCATCATT--AACCTTGGCTCTGCATTCCCCCACCCATGCCTCTCCTGCTACTaaaaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCAATTCTAAGTTCCTCTTAGGGAACTAATAGTACAAGAATTGTTCCACCTC- s mm5.chr3 59188651 950 - 160575607 ATGCCCTGTCCA-CTCTCCCTGTGCCACTGCCCGCAC-------------------------------CCAGTC--AAGACACCAATCTGCCCAGAGCTTGACCTTGTTTAAAATGCTCAACGGCTCCCCACTGTCTGTGCAATCTAAATAAG---AATTCATTTGGACAGCAAGAAG-CCCCTCAGAGCCTGGCCCTTGCTCAACTGTCTTGGCTCATCTCCTAGGACTTG-CCCTCTGCTCCTCT-GCTCCCCCGACCTACACACT---------TTACCCTGAACCCTGGCCACAGTCCCCATTGTTCTGTCTTC---------TCTGCCA-----------GACCCTGCTCT-----CCACTCAATCT--------------CTGTCCGTCTCCCATT-----------CCTCCCTTG-GTG------------CTCTCTGA-------------CACCTGGC------TCCTC-CCTGTCTCTCCTCTCCCTTAGAC-CCCGAGCT-CCCAGGAACAGAGATGAAGCT-TTTCCATGCAGGCAGCTGATATTT------------CCCATCATCCC------CTGCTCAG----GGGGACACCCTG-AGAGTGGGAC--AGCTGCAG-CCTCAGAGTGCTCACTGCC-AGTGGACTTTCTCACTCCTAT-TCTGCAGAGCCTAGCCCAGTGCCCAGGCTTTGGAAAGCAGCAAAGGTCCCCCTCGGTGTTTGCTCCGATATG-----------------------------------GAGATGTGGGAGCAGGCAGGTACAGGAGGCCAGTCCAGG-----------------TCCT-------------------GAAGCAATGAGGGCAGTGA--------TGGACAGAGCAGAGCC-AGCACCAGCTC----CCTCCCCTTACTATCACAGTCCAGAAGCAACAGGGATGGCCAACTCCAGATAATAATAATAGAGAGCAAATTCCATAGGCTGCCGGTCTTGTAACAGAGCAGATGCTCATCTTTGAGTTGCCAAGAAGCCAAACCCAAGTAAAATGCATGTTGTTGGAGATTACTGGAGA-ATCTTCCTCTATAT-ATCATT--ATACTT--CCCTGTGTTCC-------------------CTACTAACCA-G-------------AGAAGAAAGGAGAAGGCAATT--------CTCTTAATGAGCTGGTATTGAGAACAGCAGTCCACCCC- s rn3.chr2 61740735 968 - 258222147 TGGCCTCTATCACAT-----------ACTG--TGCCCTGTCCACTCTCCCTGTGCCACTGCCCGC-ACCCAGCC--AAGACACCAGTCTGCCCAGAGCCTGACCTTGCTTAAAACATTTAATGGCTCCCAACTGTCTATAGAATCTAAGGGAA---AATTCATTTGGCCAGCACAAAG-CCCCTCAGAACCTGGCCCAAGTTCAACTGTCTTGACTCATCTCCTCGGACG------TCAGCAACTCCAGCTCCCCTGACCCACACACT---------CTACCCTGAACCCTGGCCACTGTCC-CGTTGTTCTGTCTCC---------TCTGCCACCTCCCTGCCAGACCCTGCTTTCCTTCCCACTCAATCT--------------CTTTCTGCCTCCCATT-----------CCTTCCTCG-GTG------------CACTCTGA-------------CACCCAGCTG-----CCTC-CCCGTCTCTCTTCTCCCCTAGAC-ACCGAGCA-CCCAGGCACAGAGAGGAAGCT-TTTCCATTC-GTCAGATGATATTTCCG------------ATCATCCC------CTGTTCA-----GGAGACACCCTG-AAAGTGGGAC--AGCCCCAG-TCTCA--GTGCTCCCTGCC-ACTGTGTTTTCTCACTCCTGTACCCAC--AGCCTTGCACAGTGCCTAGGCTTTGGAAAGCAGAAAAGGCCTCCCTTGGTGTTCACTCAGACACA-----------------------------------GAGATGTGGGAGCAGGCAG-TACAGGAGGCCAGGGCAGG-----------------TCCT--GAAGCAGTGAG-----------------GATAGGGA--------TGGCCAGGGCAGAGCC-AGCACCAGCCTC---ACCTCCCTTACTGTCCACGTCCAGAGGCAACAGGGACGGCCAACTCCAGACAGTGAGAATAGGG-AC---GGTCATT-GCTGCCCTGCTCATAACAGAGCAAACATCCATCTTTAAGTTGCCAAGAAGCCAAACCCTGGTAAAATGTATGTTATTGGAGATTATCGGTG-----------------ATTATTGGAGACTCTCCCCTATATATCATTACCCCTGTGTTCC---CTACTAACCT-G-------------AGAAGAAAGGAGAAGGCAATT--------CTCTTAGCGAGCTGGTATTGAGAGCA-------GCCCC- s canFam1.chr17 56833709 1085 + 66886099 AGTCTCCCGCCTGCTCTCCTCATGTCACGT----------------------GGCCTCCAGGGG--ACTTTGCTAGAAAACTCAGATCTTCCCA-ATCGTTTCCCTGCTTAGAAACTTTAATGGTTCCCAACTGCTTATGGTTTATGGAGAAAAAAAATTCCTTT-CACACTACAAAGTCCCTCCAGGGTCTGGCTCTCACCCAGATGTCCTGGTTTATCTC-CAGGACTCACCCCACAAGCCCC----CCACCCCGACTCCAGCATCTCTGCACCTCCTCCCTGAGCTCTGGTTGCTGTTC-AGCTGACTTCTCTGCCTGGCGTCCTCCACCATCTCCC-CTCTGGCCCTTCTGT-----GCACTCGTCCCTCCACCCCCGTCCTTCCTTCCCATCCTACTGGGCCAGAAGCCCCCTGTCA-GCACTGGCATCAGCCCTCTCTAAGTATCTTCCATATCTTGCAACTGTTTTTCCTT---AGTCTCTCCTCCACCCTAGTC-TGTGAGCGCTCTGAGGGTAGAAGTCAACCTTTGCTCTTGTACTCCACAAACATTTCAAGTGTGGC----------CCCACCG--ATGCTAAGTGCTAGGGACACCCTGAATAACAACAC-----------CGTCG----------TGCCTAGTGGAGGTTCtcattgttgcacccctggagcctggcacagtgcctgagctgcagaaagtgcttga--------tcagtgtctgctgTGATACA--------TGGGGGAGAGTATGCCAGTAT--------------GTAGCCCGTAGTTAGAGGAT-----TGCTGG---------GGTGATCTTCCT-GAGGGCAGAGAGTGGGAGGAGGCTGAGAAGAAAGTGGCGAGCAACAGGACAGAACAGAGCT-AACTCCAGGGTC---CTTCCCCTGGCCGCCCTGCTCCAAAATCAGAAGGGAGGGCAGACT-------------GCAGAGTGC---CACCCTA-CCTGCTAAT-------TAATGACAATGCTCACCTTTAAGGAGGCAAGAAGCCAAGGTCTAAGGAAATATATCTTA-TGAAGGTAACCTGGGATCAAACCCACTTCATCCTTATT--ATACTTGGCACTGCTTCTCCCTCCCCACCAATCTCCCCTTACTGAAAAAG--------TTTAAAGAAAGGAAAAAGACGCAGCTCTGAGTTCCTCCTAGGGAGCTAATAGTGAAAGCAGCTTTGCACACTC a score=79057.0 s hg17.chr13_random 109816 465 + 186858 CA-CCACTCTCTTCACACTTAGTTTTTCCGCCACA-GGGACCAAACCACTTCCCAGCTGAGAAAGAAAGCAGGGGCAAGGTGCAGATTCCACCCAGGGACAGCAACCTAGGCCTCCTCCAACCGATCTTGTGTGGAGGGCAGGGGCAGGGGCAGGGCAGGGGTGCCTGGCCAGGCTCCAGCACTCTGCTGGTCAGACTCTTGTCTCTTT------------AGTCCAGCTC----AACCCCAGGAACTG--------CATCCAGACCCAGGACCCAGCCCACTGGTCATGACC-------CTGGCCTGCCAGCTGGCTTAAGCTTGGTTTGGCAGCATCAA-GGGTT----GATTGAGTCCCATGCATCACAGAACCAAAACTTGTGAAAGCCACAGACTGCCACTTGGTCT-CCCTGTAACACACAGACAAATGTTCTGAATGGATGGAAGGATTTAGTAAGCCAAGGTGTGGCAAAGTCCAATTCCCAATGCCGTGACT----GAG s panTro1.chr12 22812792 467 - 117159028 CA-CCACTCTCTTCACACTTAGTTTTTCCGCCACAGGGGACCAAACCACTTCCCAGCTGAGAAAGAAAGCAGGGGCAAGGTGCAGATTCCACCCAGGGACAGTAACCTAGGCCTCCTCCAACCGAGCTTGTGTGGAGGGCAGGGGCAGGGGCAGGGCAGGGATGCCTGGCCAGGCTCCAGCACTCTGCTGGTCAGACTCTTGTCTCTTT------------AGTCCAGCTC----AACCCCAGGAACTG--------CATCCAGACCCAGGACCCAGCCCACTGGTCATGACC-------CTGGCCTGCCAGCTGGCTTAAGCTTGGTTTGGCAGCATCAAGGGGTT----GATTGAGTCCCGTGCATCACAGAACCAAAACTTGTGAAAGCCACAGACTGCCACTTGGTCT-CCCTGTAACACACAGACACATGTTCTGAATGGATGGAAGGATTTAGCAAGCCAAGGTGTGGCAAAGTCCAATTCCCAATGCCATGACT----GAG s mm5.chr3 59189601 414 - 160575607 CGCCCCCTCTCTTCATATCTTAATTCTGAGCCAC--------------CTTGCCAGCTGAGGA--AAACCCAGGGTATGGTACAGGTCCCA-----------TAGCGAGGGCTTCTGCCAATTG-------GTGGA--------------------------------GCCCACCTCCAG-GCCCTGCTGA--GAGCCCTTGCTTCCTTAAGACTGGATGGAGTCTGCCTCTGGAATGTGCAGAAACT----------ATCCAGGTGTGTGACTGGGCCCCCCGGTTGTGTCCTGAGATTCTGGCCAGTTAGCTGGCCT--GCTTTGTT----------AAAGGCTTGCAGGGCTGAGACCCATGTGT-AAGGAAGAAGAGCATTTGACAGCCACAGACTGCTCCTCGGTGTGCCCAGTAGCACACAGACGAACGTTCAGGATGGTTTTAAAGCTTTAGCGAG--AAGGCATAACAGGGTCCCACAGTCAACACCACTACTACAAAAG s rn3.chr2 61741703 417 - 258222147 CT-CTCCCCCCTTCACATCTTAATTCTGGGCCAC--------------TCTGTCAGCTGAGGA--AAACCCAGGGTGTGGTACGGGTCCCACAGCGAGGGAAGAGCCAGTGCTTCTGCCGACCA---------------------------------------GGCTGGCCCATCTCCAG-GCCCTGCTGAGCAG-CCCTGGCCTCCTCAGGGCTGG----AGTC----------AGGCGCTGGAATGTGCAGAAGCCATCCGGGTGGACGACT--GCACCCTGGCTGCGCCCTAGGGTTCTGGCCAGTTAGCTGGCCT--GCTTTGTT----------CGAGGCTCCAAGGGCTGAGCCCCATGTGT-AGGGAAGGAGAGCGTTTGACAGCCACGCACTGCTCCTCCGTGTGCCCATGAACACACAGACAAACGTACAGGATGGACTGAA-GCTTTAGTGAG--AAGGCACAGCA-GGTCCCACAGCCAGCACTATTACTACAAAAG a score=29939.0 s hg17.chr13_random 110281 101 + 186858 CAACACTGCGGAGC-ATCTCCCGGCGGTGAATCA---GACATTCTCTCCAGGAAGACTTGTTGAATTCACAAACCCACAGACCTTCTCACGCCATCAAGAACACA s panTro1.chr12 22813259 101 - 117159028 CAACACTGCGGAGC-ATCTCCCAGCAGTGAATCG---GACATTCTCTCCAGGAAGACTTGTTGAATTCACAAACCCACAGACCTTCTCACGCCATCAAGAACACA s mm5.chr3 59190015 96 - 160575607 CACCTCTGAGGACCTGTCTCGTGTTGCTGAGGCA---GACTTTCCCCTCATGGAGGACTTCAGAATTCACACAC---AAGACCTCC---AGCCACAGAGAACACA s rn3.chr2 61742120 95 - 258222147 CATCCCTGGGGACCTGTCTCCGGTTGCTGAGGCA---GACTGTCCCCTGACGGAGGACCTCTGAATTCACACAC----AGACCTCG---AGCCATGGCGAACACT s canFam1.chr17 56834794 104 + 66886099 CAACTCTATGAATGAATAACTCATTAGTGAATCAGGGGACACTCTTCAC-CAAAGGACTGCCGACTTCACATTCTCACAGGCCTTCTCAAACCATCAAGAACACA a score=-868.0 s hg17.chr13_random 110382 11 + 186858 CCAGGCACCAC s panTro1.chr12 22813360 11 - 117159028 CCAGGCACCAC s mm5.chr3 59190111 2 - 160575607 TC--------- s rn3.chr2 61742215 5 - 258222147 TCAGG------ a score=160908.0 s hg17.chr13_random 110393 363 + 186858 TTAGAGAGAAATCCTGTGTGCCACGGCCCCACCCTCCCGGGTTCATCTTTTTTGTT---AGCAAGTCCAATCT-TCTGCCTTCTCCCTTCTTCAAATGCAGAAAGTCCTCTAGGGCACACTAGGAATCCAGGACAGGGTTTACCATTAAGCTCCCAAGCTCTGGAAGCTAGATTTGCATTCGCTTGCCAGTCGACTTTTCAGATTGGATTCCTATAATACTTG-AAACAACCGGCTCCCTTTTCATTCCTTTCCAACCCAATTCACCGCATGCAAATGATATCTATATCAGTGCAAATGACACCACCTGAATTATCTGGTTCTTGGCCAAAAAAACTGGGTTGTTCAGCATGGAGTAGAAAGAGCTTT s panTro1.chr12 22813371 363 - 117159028 TTAGAGAGAAATCCTGTGTGCCACGGCCCCACCCTCCCGGGTTCATCTTTTTTGTT---AGCAAGTCCAATCT-TCTGCCTTCTCCCTTCTTCAAATGCAGAAAGTCCTCTAGGGCACACTAGGAATCCAGGACAGGGTTTACCATTAAGCTCCCAAGCTCTGGAAGCTAGATTTGCATTCGCTTGCCAGTCGACTTTTCAGATTGGACTCCTATAATACTTG-AAACAACCGGCTCCCTTTTCATTCCTTTCCAACCCAATTCACCGCATGCAAATGATATCTATATCAGTGCAAATGACACCACCTGAATTATCTGGTTCTTGGCCAAAAAAACTGGGTTGTTCAGCATGGAGTAGAAAGAGCTTT s mm5.chr3 59190113 315 - 160575607 --------ACATCAGATCAGCCACGG-CCCATGCTCC---ATTTCCATCTGTTGGT---ACCAG--CCAGTCTCTCCACTTTCCCTCTTCTTTAAC--CACAAGGACTGTCAGGGCACACTGGGAATC--------------------------------CTAGAGGCTGGACTGGCCCTGGCCTGCTGGTCAGCTTTCCTGAGTGGACTCCTGTGA-GCCTG-AAGCTACCTGTTCCCTTTTCATCCTGTTCCAACCCAATGCTCCACCTGCAAACGGGATCTCAGTCAGTCCAGACGGCACCTCCTGAATCATCTGGTGCTCGGCCAGATGAACTGGGTTGTTCTGTGTAGAGTAGAAAGAGCTTT s rn3.chr2 61742220 297 - 258222147 ---------------ATGGGCTGTGGCCTTGTGCTCC---AGTTTCATTGTGTA------------CCAGTCT-TC-ACTTTCCTCTTTCTTCAAA--CACAAGGTCCTCCAGGGCACTCTGGGAATC--------------------------------CTAGAGCCTGGACGGGCAC-GGCCTACTGGTCAGCTTTCCTGAGTGGACTCCTGTGAGGCCTG-AGGCAACCTGTTCTCTTTTCATCCCTTTCCAACCCAATTCACCACTTCCAAATG-CATCTCAATCA--CCAGACGACACCACCTGAGTTATCTGGTGTTTGGCCAGACGAACTCGGTTGTTCTGTGTAGAGTAGAAAGAGCTTT s canFam1.chr17 56835122 361 + 66886099 TATGAGAGCAATCCTCCGTCCCATGC-CCCACCCTTC----TTTTCATCTGTTGTTGTGAACAAGCCCAGTCT-CCTGCGTTCTCCCTTCTTCAAAAACACAAAGTCCTCCAGGGCACACTGGGAATCCAGGGCACGGTTTACCAGTAAGCTTCCAAGCTCTGCAAACTAGATGCATATTAGCTTGCCAGTCGACTTTTCAGATCGGATTCCTACAATACTTGAAAACAACCAGCTCCCTTTTCATTCCTTTCCAACCCAATTCACCGCATGCAAATGATATCTATATCAGCACAAATGATACCACCTGAATTATCTGGTTCTTGTCCAAA-AACCTGGGTTGTTCAGTGTAGAGTAGAAAGAGCTTT a score=102343.0 s hg17.chr13_random 110756 93 + 186858 AAA-ATGTATTATTAATT-GGGGCTGGATTA-TTTTTGCAACTGTTACTAAGGAAACCTCAATTGCTATAGTAACTGCATATGTTAAACTGGAATC s panTro1.chr12 22813734 95 - 117159028 AAATATGTATTATTAATTCGGGGCCGGATTA-TTTTTGCAACTGTTACTAAGGAAACCTCAATTGCAATAGTAACTGCATATGTTAAACTGGAATC s mm5.chr3 59190428 94 - 160575607 AAA-ATGTATTATTAATT-GGGGCCAGATTATTTTTTGCAACTGTTACTAAGGAAACCTCAATTGCTATAGTAACTGCATATGTTAAACTGGGATG s rn3.chr2 61742517 93 - 258222147 AAA-ATGTATTATTAATT-GGGGCCAGATTA-TTTTTGCAACTGTTACTAAGGAAACCTCAATTGCTATAGTAACTGCATATGTTAAACTGGTATC s canFam1.chr17 56835483 93 + 66886099 AAA-ATGTATTATTAATT-GGGGCCAGATTA-TTTTTGCAACTGTTACTAAGGAAACCTCAATTGCTATAGTAACTGCATATGTTAAACTGAAATC s galGal2.chr1 102121115 94 - 188239860 ACA-GTTTATTTTTAATT-GGTGCTGGATTATTTTCTGCAACCGTTACTAAGGAAACCTCTGTTACTATAGCAACTGTGTATGTTAAGTCAGTAGC a score=225598.0 s hg17.chr13_random 110849 564 + 186858 CTGTGACTAAAATTCTATTCAGTCACGTGGTCTGAGAACAAGAATTCAAGGAAGAGAAATGTTCCAAAGCATTTCCA-----------------------------------------------------------------------TTTTTTTTCCTTCCCATGTCAAAATATTGTGAAGTGTT-GAGAAGCTTGAAAGAGAGACATTTTTTAAATTTGGTGCATGTCTGACAGGTGGGCAAGGGGTCAGCTCCTATTCTATGCTCTGGATTTCCTCCCACATCTCCAGGG-----------------CAGGTAGGACCTTTCC-TGAGGCACAGGGGAGACTGGAA-TCTCCACATATAATTAGGGAGCCCTCCCATGTCCTGCCAGAGCCCTGCCCTGGGCGGTGTACAGCTTGCGTGCACC---ACCTTCCTCCACA----GAGCTAGGAGAGCCCTG-CCCACTTAGAGACCAAAGgtgttttcatctgcaaa--ataaga---acaatgtctctatctc---cattag--gagttttgtgcagactaaaagcaattgtctataaaaagagtttagcacagaacctgggatataacaaacacccagtgaattttagctATTCTCATTCCTTTTTGGTTTCTGTGCCTTGTCCCAAGTTCAAAGTTCA s panTro1.chr12 22813829 566 - 117159028 CTGTGACTAAACTTCTATTCAGTCACATGGTCTGAGAACAAGAATTCAAGGAAGAGAAATGTTCCAAAGCATTTCCA-----------------------------------------------------------------------TTTTTTTTCCTTCCCATGTCAAAATATTGTGAAGGGTT-GAGAAGCTTGAAAGAGAGGCATTTTTTAAATTTGGTGCATGTCTGACAGGTGGGCAAGGGGTCAGCTCCTATTCTATGCTCTGGATTTCCTCCCACATCTCCAGGG-----------------CAGGTAGGACCTTTCC-TGAGGCACAGGGGAGACTGGAA-TCTCCACATATAATTAGGGAGCCCTCCCATGTCCTGCCAGAGCCCTGCCCTGGGTGGTGTACAGCTTGCGTGCACC---ACCTTCCTCCACA----GAGCTAGGAGAGCCCTG-CCCACTTAGAGACCACAGgtgttttcatctgcaaa--ataaga---acaatgtctctatctc---cattagctgatttttgtgcagactaaaagcaattgtctataaaaagagtttagcacagaacctggtatataacaaacacccagtgaattttagctATTCTCATTCCTTTTTGGTTTCTGTGCCTTGTCCCAAGTTCAAAGTTCA s mm5.chr3 59190522 581 - 160575607 CTATGACTCAACTTCTACTCAGTCACATGGTTAAAGAGCCACAAGCCAAGGAGGAGAAATATTTCAAAGCATTTCCAGTTTCTTCTTCTTCTATCTC---------------------------------------------------TTTTTTAGCCATCCCATGTCAAAATATTATGAAGTATT-GGGAAGCCTGAGAGAGAGATACTTTTGAAA-----------TCTGACATGTAGGCAGGGGGTCAGCTCTTACTATAAGCTCTGCATGTCCTCTC----CTTTGGGGGGGGGGGGGAGTGTGGTAAGGGAAGACACACCC-GGAAGCCAGGGGGAGGCAGGAG-GCCCCACAGCTCATTAGGAAGCACTCACAAG-CCTGTCTCAGCATTGCCCTGGGCAAGGTACATC-TGCGAGCTTC---GGCTCCCTCCCCC-------TTAGGAGAACCTGGACTTTCCGAAAGACCA---GTGTTTTCATCTGCAAACCAGAACG---GCAAAGTGTGGATCTAATGCACCCA--GAGTGCCCTGCAGACCAAATGCATTAGCT--CCAGAGGAGTTTAGTGGGAGGCCGAGTGGACCCTGAACA-ACAGTTAGTTTTAGCTCTCCTCAATCCCTTTTGGTTTGTATTTGTGGTTCCGAGTTCAAAACTCA s rn3.chr2 61742610 634 - 258222147 CTATGACTCAACTTCTATTCAGTCACATGGCCAAAGAACCACAAGCCAAGGAAGAGACATATTTCAAAGCGTTTCCA------ATTTCTTCTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATCCCATGTCAAAATATTATGAAGTGTTGGGGGAGTTTAAGAGAGAGGTACTTTTGGAATTTGGTGCATGCCTGACAGATGGGCAGGGGGTCAGCCCTTACTGTAAGCTCTGCATTTCTTCTC-TGTCTCAGGGG-----------------TGGGGAGGACGCATCC-TGGAGCCCCGAGGAGTCAGGAG-GTTCCACAGCTCATTAGGAGGCATTCACAGG--CAGCCTCAGCATCGCCCTGGGCAAGGTGCTTC-TGTAAGCTCCCCGACCTCCCCCTCCCCTTCACCCTAAGGGAATCTGG-CCTTCCTGAGGGCCA---GTGTTTTCACCTGCTAA--AGAGAACAGGGAAAGTGTGTATCTAATTCACCCA--CAGTGCCCTGCAGATTAAATGCATTAGCT--TTGGAGGAGTTTAGTGTGAGGCTGCATGGACCCTGAACAATGGGGAGGTTTTAGCTCTCCTCACTCCTTCTTGGTTTGTGTTTGTGGTCCCAAGCTCAAAGCTCA s canFam1.chr17 56835576 537 + 66886099 CTATGACTAAGCCTCAATTCAGTCACATGGTCTGAGTACAAGAATCCAAGGAAGAGAGATGTTTCAAAGCATTTCCA----------------------------------------------------------------------TTTTTCTTTCCTTCCCATGTCAAAATATTGTGAAGTATT-GAAAAGCTTAAAAGAGAGGCATTTTTGAAATTTGGTGCACGCCTGACAGGTGGGCAAGGGGTCAGCTCCTATTCTA-------------------CATCTCAAGGG-----------------CAGGAAGGGCCTTCCCTTGAAGTGCAGGACAGCCAGCAGCCCCCCGTGCCTAATTAGGAAGATCTCAAGAGTCCTGTCCCGATACTGCCCTGGGCGGTGGGCAGCCTGCCTGCACC---ATCCTCGTCTGCA----GAGGAAGGGGGGCCCAG-CCCACTTAAGGACCGTAGAAATTTTCATCTGCCTG--ATGACA---AAa----------------cctcaaaggagtgttgtgtaggctaaatgcaatggtctatggagagagtttagcacagaacccaggagaacataaacgtccaatatgtattcactattTCCATTTCTTTTGGGGTCTCTGGGTTTGGCCCACGTTCAAAGCTCC a score=5232.0 s hg17.chr13_random 111413 47 + 186858 ACACTTAGATTAGGAGTTGTCAAGCA-TAAGTGGCAA-------TCTTCctgctc s panTro1.chr12 22814395 48 - 117159028 ACACTTAGATTGGGAGTTGTCAAGCATTAAGTGGCAA-------TCTTCctgctc s mm5.chr3 59191103 51 - 160575607 CAG--TAGGTGAGACATTGACAAACA-T-AGTGGCAACTCAATTTCTTCCTTTTT s canFam1.chr17 56836113 45 + 66886099 ACA-TGAGATCCAGAACTGGCAAAC--CAAGTGGCAA-------ACAtgctacta a score=2036.0 s hg17.chr13_random 111460 13 + 186858 aaagtgctgttct s panTro1.chr12 22814443 13 - 117159028 aaagtgctgttct s canFam1.chr17 56836158 13 + 66886099 agagtgtggcccc a score=138698.0 s hg17.chr13_random 111473 642 + 186858 tggaccagcag----------------cactgg--gagcttgttagaaatgcagactctcaggccc-cacccca-gacccagtaagtcagaatctgcactttaacaagatccccaggtgattcacaagtagcttcaagcctgagaaacCCCGGACTTGGCCGTGTGAGTGAACGG--GCTT-TGAGAGGCCATAAATGCAGACGTGAAAGAAA----------------AGAGTGAGGCTTGGTTAACCCCCAACAGTGAATTGGCAGGAGGAAGAA--AGAATCCAGCAAG--AGACAGGAA------GAGGGTCCGAGAGCTGCTCCAGCT-------CACGCCAGCAGCTGCCT-----------------------TCACAGCAGCCCCCAGGGACCAGGCCCTGCTTTGAGGGAGTGGCCCTTTCTTTCTGCAGCTGGA----GAGTTTCCTTCCCAGGCTTGTGATTAAAACTTGGAAGATCTGTGTTTTGTATGGTAGGAGAGGCTGTTGCATTTGTTACAAGCCAGGATAGGGTGGTTTCAAG-GTGAGACATCAGGAAGAGGGAAGAACTCCACAGCGGAGACCAGCAGCAGCTTTCTCAGCCAGCCTACCCTCCCTTCAGATTCCACTCTGTGCGTGCTCTTCTCACTCAAAACTCATTTATTTCTTCAATAAA-GGATTCCCTTATGCTCCACTATAGC--TGTTAC-TGCTGCCTTAC s panTro1.chr12 22814456 644 - 117159028 cagaccagcag----------------cactgg--gagcttgttagaaatgcagactctcaggccc-cacccca-gacccagtaagtcagaatctgcactttaacaagatccccaggtgattcacaagtaggttcaagcctgagaaacCCTGGACTTGGCCGTGTGAGTGAACGG--GCTT-TGAGAGGCCATAAATGCAGACATGAAAGAAA----------------AGAGTGAGGCTTGGTTAACCCCCAACAGTGAATTGGCAGGAGGAAGAA--AGAATCCAGCAAG--AGACAGGAA------GAGGGCCCGAGAGCTGCTCCAGCT-------CACGCCAGCAGCTGCCT-----------------------TCACAGCAGCCCCCAGGGGCCAGGCCCTGCTTTGAGGGAGTGGCCCTTTCTTTCTGCAGCTGGA----GAGTTTCCTTCCCAGGCTTGTGATTAAAACTTGGAAGATCTGTGTTTTGTATGGTAGGAGAGGCTGTTGTGTTTGTTACAAGCCAGGATAGGGTGGTTTCAAG-GTGAGACATCAGGAAGAGGGAAGAACTCCACAGCGGAGACCAGCAGCAGCTTTCTCAGCCAGCCTACCCTCCCTTCAGATTCCACTCTGTGCGTGCTCTTCTCACTCAAAACTCATTTATTTCTTCAATAAA-GGATTCCCTTACGCTCTACTATAGCTGTGTTAC-TGCTGCCTTAC s mm5.chr3 59191814 615 - 160575607 TGGATCAGCAG------CATGAG-ACCCACTGGGTGAATTTCTTAGAGA--CAGACTCT-------------CA-GACCTACTGCATCACAATCT-CAATAGAACAAGGTCAAT-GGAGATCCAGACTTGCCTTC-CGCCAGGGAAGCCCTGGGTGTGGCTGC-TCAGCACACAA--ACTT-GGAGAGTCAATGAATGCAGAGGAGAAAGTAA----GCAAAGATACACAAAGGTAGGCTTGGTGAATCCCTCCC--TCGTACAGCAGGAGGCAGGAGGAGGGCCAGGCAGGCTAGACGGCAA-----TGCTGGCCC--GTACAGTCCATGGA-------CACTGCAGCATCTGCCT-----------------------TCTCAGAAGCTCCCA------------TCATTTGAGGGGAT-GCCCTTTCTTGCTGCAGCTGGACAGTTAGTTCTCTGCCCAGGCTTTGGATCAAAGCTAAGACAGTCAG---TCAGTCTGGT---AAAGGCTGC----TCTGCTATGAGGCAGAAGTGGGCTACATGGAG-GAAAGACAGTGGAATGAGGG----GCTCAGCGGCAGAGAGCAGCAGCTGCTTCCCTAGCCCACCTACCCACCCTCTGGATG--GGTTCATGTGTGCACTGCTCATGCAGAAGGCACTTACTCTTTCAGTAAATGAATCTCCTTAAACTCAGCCATAAC------------TGCCTTAC s rn3.chr2 61743925 564 - 258222147 TGGATCAGCAG------TGTGAG-ATCCTTTGGGTGGATTTCTCAGAAA--CAGACTCT-------------CA-GACCTACTGCATCACGATCTTCACGAGAACAAGGTTCAT-GGAGATCCAGACGTGCCTTC-AGCCTGGGAAACCCAGAGTGTGGCTGC-TCAGCACGTGA--ACTTGGGAGAGCCAATGAATGCAGAGGTAAAAGTAA----GTAAAGACATGCAAAGGTAGGCTTGGTCGGTCCCCTCC------------AGGAGAGGAG--AGAATGCAGCAGC--AG-CAGGAGGGCCAGGCAGGCTGGATGGCAATGCTGGCC-------CA----AGCAG-----T-----------------------ACACAGTACACTGCA----------------------------------------GCGTCTGGG----CAGCTTTCTTCCCAGG---ACGATCAAGGCTAAGGGAATCTG---TCAGTCCTT----GAAGGCTGC----TTTGCTGGGAGGCAGAGGAAGGCTACAGGGAG-GACGGAGAGTGAAATGAGG-----ACTCAGCAGCAGAGAGCGGCAGTTGCTTCCCTAGCCAACCTGCCCGAACTTTGGATG-AGTTTTATGTGTGCACTGCTCATGCGGAAGGCACTTACTCCTT-AGTAAATGATTCTCCTTAAACTCAACCATAAC------------TGCCTTAC s canFam1.chr17 56836171 666 + 66886099 gggacaagcagcagcatcatgggtgtcacctgg--gaacttgctagaaatatagactcccagacccacccctcacaacctgctgactcagaatctgc-ctccaacaggatccctgggtaactcaggtaccccttaaagcctgagaaTCCCTGG----GGCCCTATGAGTGAAGTAATATTT-AGGGAGGGCAATGGCACACAGGTGAAAGGAAAGCTGTTAGG------GGACAGAAGCTTGGTTAATCCCCAACAGTGAGTCAGCAGGAGGAAGGG----------GCAGG--AA--GAGAG------GCTGTGGAGAGAGGCCCTCCGGCTTTGGCTCCACCTGTGCTGCCTCCTGCCTCGGGATAGGGTGGGGGGCATCTCAG--GCTCCCA--GGCCTGTGTCCTGTTTGAGAGGAGGGCCCTTTCCTTCTGCATCTGAA----GGGTTCCATTCCTAGGCCTCTCGTGGAG----TGGAATCGTGTGTCCTGCATTCTGGGAGAGGCTGC----TGTGTTACAA-CAAGGACAGGGTGGTGGACAGTGAGAGGCATCTGGAGGA-------ATTCAGCAGCAGGGAGGAGCCGTGGCTTCACTGGCCA-CCTATCCATCCAGGGGACTCTGCTTTGTGGGTGTGCCCCTCACACAGAACTCCTTTCTTCCACCAGTGAA---GTTCTTTTACACCCTGCTAGAGC--TCTTCCAGGCTGCCTCAC a score=836.0 s hg17.chr13_random 112115 3 + 186858 AAC s panTro1.chr12 22815100 3 - 117159028 AAC s mm5.chr3 59192429 3 - 160575607 ATC s rn3.chr2 61744489 3 - 258222147 ATC a score=20409.0 s hg17.chr13_random 112118 72 + 186858 GAAGGTAATTTTT--AAAGTCTTCTCTTTCTTACAAAATTCTAAGCATATGCAGGGCAGGGACTCTGACCCAAT s panTro1.chr12 22815103 71 - 117159028 GAAGGTAATTTTT--AAAGTGTTCTCTTTCTTACAAAATTCTAAGTATATGCAGGGCAGGGACTCTGA-CCAAT s mm5.chr3 59192432 64 - 160575607 AAAGGCCACTTTT-AAAAGGACTCCTCGTTTTGCAAATGCCTGGGCA---------AAAGAACTATGAACCAAT s rn3.chr2 61744492 62 - 258222147 AAAGGCCATTTTT-AAAAGGACTCCTCTTCGTGCAAATGCCTGGGCA-----------ACAGCTATGACCCAAT s canFam1.chr17 56837017 74 + 66886099 GAGGTTAATTTTTTGAAGGCCTTTTCTTTCCTACTAAATTATAAGCACCTGATGGGCAGGGACTGAGACCCAAC a score=30105.0 s hg17.chr13_random 112190 165 + 186858 CATT-GTTAA----ACTAATCAATGAATGGTTGAAT-------AAATGTGGTTACTTTTTAAAAGGAGGGG-------------------------CAATTCTGATTTTGATAGA--AAAGAGAACATTTCAAAAGGTATGTGGCCTCTGAGCTAGGCCCTGAGAAACAAGCAGAGAAG------------------GAGAGTGAAAGGGCATGCCAGAGAG s panTro1.chr12 22815174 165 - 117159028 CATT-GTTAA----ACTAATCAATGAATGGTTGAAT-------AAATGTGGTTACTTTTTAAAAGGAGGGG-------------------------CAATTCTGATTTTGATAGA--AAAGAGAACATTTCAAAAGGTATGTGGCCTCTGAGCTAGGCCCTGAGAAACAAGCAGAGAAG------------------GAGAATGAAAGGGCACGCCAGAGAG s mm5.chr3 59192496 164 - 160575607 CATT-GCTAATCACATTAACTAATAGGTGATTGAATT----AAAAACCCAATTAATCTTTTAAAAGAGGGGTCA---------------------TTAATTCCGACTGTGATAAAAGAGAGAGAACCTTGCAAAAAGC-TGTGATCCCTGAGCTGGGCTCTGAAAAAT-------------------------------GAATGAGCTGGGGTCCAACAGAT s canFam1.chr17 56837091 218 + 66886099 CATTCGCCAA----ACAAATTAATAAATGGATGAATTGAAGAAATAGGTGATTGGTGTTTTCTTGGAGGTATGGGAATATATAAGGTAaaagtatttaatcctgactgtgacaggaggcacggcacgcttgaaaaagcatgtgacgtctgagctcagccctgagaaccaagtgggtaggtgttgcccaggcacgggagcgagagaaagggcattcaagaaag a score=14103.0 s hg17.chr13_random 112355 146 + 186858 AGGGGACAAGTGAAGAAAGATAACAACTACCCTGTGCACTCTATTCAAGGAGGAGCAAGTGCTCAGGTGTAGTGGATGAGGTTAGAAAGGTAAGCTT---CGGCCACACTGCAAGGGGCCTGCAGCTTGTAC--TTGATCCTGA-CCACCTg s panTro1.chr12 22815339 146 - 117159028 AGGGGACAAGAGAAAAAAGATGACAACTACCCTGTGCACTCTATTCAAGGAGGAGCAAGTGCTCAGGTGTAGTGGATGAGGTTAGAAAGGTAAGCTT---CGGCCACACTGCAAGGGGCCTGCAGCTTGTAC--TTGATCCTGA-CCACCTg s mm5.chr3 59192660 125 - 160575607 GAAGAACAAAAGGAAGA-------GATCACCCAGAGCAGGCAAC------AAGGCCAGATTCTCAGGTGTGGTGGATGATGTCAGAAAGGGAAG--T---GGCCAAGACTG---GGGGC--GGGACCAGTTC--TTGACTCTGC-CCA-CTG s canFam1.chr17 56837309 123 + 66886099 aaaggacaggtgagcaaaggtggca----------------cattcggagaaaaccaagtggtcagg-gtggcggatagagtcag--AGGTCAGCCTCCACCGCCGGACTG-------CCCAGAGCGTGGAC--CAGACCCTGC-CTACTCG s galGal2.chr1 102127719 133 - 188239860 AAGGGAAAAGAGGTGGAGGAAGCAAACCCACCTGCGC---CAACTGGAGGAGAAAAAGGGCTCCAGCTG----------GGCTGTTAATGCAGGTCT---GCACAAAGTCA---CAGCCCTGAATCATGCACCACTGAGCCTCCTCCTCCTG a score=14491.0 s hg17.chr13_random 112501 116 + 186858 tggccctcagggtgcatgccatggatctgcag--atcagtatcacctgggaatttgccagcccctgctaagtcagaaaaactgtgagtaagg-------ctcagcaacctgcaggctcatgagcc s panTro1.chr12 22815485 116 - 117159028 tggccctcagggtgcacgccatggatctgcag--atcagcatcacctgggaatttgccagcccctgctaagtcagaaaaactgcaagtaagg-------ctcagcaacctgcagtctcatgagcc s mm5.chr3 59192785 112 - 160575607 TGGCTCTTAGGGAATATTTGGTGGAT----GG--CACAGC--TACCTGGCAAGTTAGAA--TTATACTGGGTGAGAAA---TGGGGGTAAGAGATGACTCCCAGTGACCTGTGGGTTTGAGAGCC s canFam1.chr17 56837432 99 + 66886099 AGGCTCTCAGGGGGCCTGTCTGTGGCCCTCAGGCATCAGCATCACCCAGGGACTTGCTGA-GACCACTACATCCCAAA-------------------------GAGACCTGCAGTTTGACGAGCC a score=5820.0 s hg17.chr13_random 112617 39 + 186858 ctccaattgattctgatgcacattcaagtttgagaagca s panTro1.chr12 22815601 39 - 117159028 ctccaattgattctgatgcacattcaagtttgagaagca s canFam1.chr17 56837531 37 + 66886099 -CCCAGCTAAGTCTGAGGGGTACT-GAGCTTGAGAAGCC a score=7657.0 s hg17.chr13_random 112656 79 + 186858 ACAGCTGTGCTGCTGAGGTGGTTGCCGGTAAGTCTGGAGAA--AGCGGTTTCTGTGCAGTG-------------GTGTGAGCAGCAGCCAGAGT s panTro1.chr12 22815640 79 - 117159028 ACAGCCGTGCTGCTGAGGTGGTTGCCGGTAAGTCTGGAGAA--AGTGGTTTCTGTGCAGTG-------------CTGTGAGCAGCAGCCAGAGT s canFam1.chr17 56837568 76 + 66886099 ACAGGTGCTGTGGTGAGGTGGCCGTGGGCCA--CGGGAGAC--AGCACTTTCTGTGCGGGG-------------GC-TGAGCAAAGGCCAGAGG s galGal2.chr1 102127852 82 - 188239860 --------CTTGCTGAGCGTGCTGAAAGCTGGCAAGGAGGAGCAGCAGCACTGAAGCAGGACAGCAGATCTCACCTGTGGGCAGCA---AGGG- a score=3086.0 s hg17.chr13_random 112735 25 + 186858 GGCAGGTGCAAAGAGAT-GGGCACTG s panTro1.chr12 22815719 25 - 117159028 GGCAGGTGCGAAGAGAT-GGGCACTG s mm5.chr3 59192970 16 - 160575607 GGAAAGAATGAAGAGA---------- s canFam1.chr17 56837645 26 + 66886099 AGCAGGTGAGGAGATTTGGGGCAGTg s galGal2.chr1 102127934 25 - 188239860 GGAAGGAGTGAAGCTCT-GAGCACAT a score=12527.0 s hg17.chr13_random 112760 32 + 186858 AGGGAGGAAGAC-ACTGCTCTTTATTAAAGACA s panTro1.chr12 22815744 32 - 117159028 AGGGAGGAAGAC-ACTGCTCTTTATTAAAGACA s mm5.chr3 59192986 25 - 160575607 AGGAAGGGAGA------CTCTTTTTCAA--ACA s rn3.chr2 61744603 28 - 258222147 AGGAAGGGAGA---CTGCTCTTTCTAAA--ACA s canFam1.chr17 56837711 33 + 66886099 agagagagagaAGACTGTTCTTTCTTAAAGACA s galGal2.chr1 102127959 32 - 188239860 -GGGGGACAGGAGGCTGCTCTGCACCACAGTCA a score=167471.0 s hg17.chr13_random 112792 790 + 186858 ACAGACAGTAAT-------GCTAGAGATAGAGGTGGCCAGTGGCTGCGGCAGGAGAGATGTTTCAAGTGGAGAGAAGCAAGTCAGATGAGAG---------ACAAGGAAAGAATGCAGGG--------------------TGAGC---TGCA-----------------------------TGGGAAGCCAGTGGCACAG-GCGCCTGCCACTCAAACTGTTACTACCCCTG--AGTCCCTCTGTCCTTAACACCCCTTGGCTCCCTGCTCTCTCCACATGACCATTCCCTATTTG---GGCCCTCAATGATCTCTTTCTCAGCCTCTTATAATTGGCCTGCATATGACACTCCCTCCCTCTCGGCCT-AGCCACAGCCAGGGGATTTCCCTAAA--TGGCAAATGGGGCATGCTACTGCCCAC--------------GGCTGCCCACCCCACAGCCCGT------GACAGCAGTT----CTCAATAAGGCAGCTAAT-------------------------------------------TGCAAGC-----------------------------AGGtc-tctggttgccatattgatttggggaggggt-------------atatattcaatggaataaagccatta-aagatgtaaaatcgtatctgggacaactccatgcaacaaaactctgcctcgtgtcctgtgtgactttcgaatgacattcatatgggcaaaaattatgcctctgagcctagaacctactttcattttactataatcacaatac-----------------ttttatt---------ttgcatggttttaatacatgccaggtcagtcaagagag---gattttcctttgttttgttcagaattgtagcaagagttactcaggacttcagaaaccctgtcaggatggcagtcctgctcatggtGCCAAGTCTGATA--CGGT--GACTGTCAGTGTGCATTTAGGGACAGCGTTG-ACTGT s panTro1.chr12 22815776 790 - 117159028 ACAGACAGTAAT-------GCTAGAGATAGAGGCAGCCAGCGGCTGTGGCAGGAGAGATGTTTCAAGTGGAGAGAAGCACGTCAGATGAGAG---------ACAAGGAAAGAATGCAGGG--------------------TGAGC---TGCA-----------------------------TGGGAAGCCAGTGGCACAG-GCGCCTGCCAGTCAAACTGTTACTACCCCTG--AGTCCCTCTGTCCTTAACACCCCTTGGCTCCCTGCTCTCTCCACATGACCATTCCCTATTTG---GGCCCTCAATGATCTCTTTCTCAGGCTCTTACAATTGGCCTGCATATGACACTCCCTCCCTCTCGGCCT-AGCCACAGCCAGGGGATTTCCCTAAA--TGGCAAATGGGGCATGCTACTGCCCAC--------------GGCTGCCCACCCCACAGCCCGT------GACAGCAGTT----CTCAATAAGGCAGCTAAT-------------------------------------------TGCAAGC-----------------------------AGGTC-TCTGGTTGCCATATTGATTTGGGGAGGGGT-------------ATATATTCAATGGAATAAAGCCATTA-AAGATGTAAAATTGTATCTgggacaactccatgcaacaaaactctgcctcgtgtcctgtgtgactttcgaatgacattcatatgggcaaaaattatgcctctgagcctagaacctactttcgttttactataatcacaatgc-----------------ttttatt---------ttgcatggttttaatatatgccaggtcagtcaagagag---gattttcctttgttttgttcagaattgtagcaagagttactcaggacttcagaaaccctgtcaggatggcagtcctgctcatggtgccaagtctgata--cagt--gactgtcagtgtgcatttagagacagcgttg-actgt s mm5.chr3 59193011 772 - 160575607 TCTAACGGGAAT-------GTCAGGGATGGAGGAAGCCAGTGGCTGGGGCAGATAAGATCTTTCAAGTTCAAGGAATCAGGTCAACCAGAAG---------ATTAGGGGACAATGGGGAGCTCTGGGGACACCCCTCACTCAAAA---TGCACACAT------ATACATGCATGTACACTCTGGGAAGCAAGCAGAAAAATGTACCCATCACTCATGAAGTCACTGCACTTGA-AGTGCCCATGTTCCTG-------------TTCTTCTCCCTCTACATGGCCAGGACCTACCTACCCAGTCCCTAATAAGCTCTTCCCCAGACC-------GCAGCCTGAAGACAAGTCTTCCAGCCTCT--GTCT-AGCCA-----AGGAGATCTTTCTAAA--GGGCAA-----GCAAGAGGGTGGTCA-----------------CTTCCAAGCTGAGAGCCTGTCCCTGGGACATCTGTTCTCCCTCCACAGGGCAGACAATGCCCCCAT----CCCT---------------GTCCCCCTCAAATACAATCCTACATCATCACAGGAACCCGGAGGCACAAGGTCTTTTGATTTTTACATTGGTTTAGGGAGTAGG-------------AGGTAGGTAGTG-------------------TCTCAAATCCTTTC---------------CAATAAAGCTTTGTCCTGTGTCCTCTGTGACTTTCAAATAACCTTCAT------GAGAATTGTGCCTTTGAGCCTGGAGTCTACTTCGCTTTTCTAGTAAACACAGCACCCAT-----TTTTCTTTTCTTCTT---------CTTCCTGTTTTTAATATATA--GGGCCAACCATTAGAG---ACCTTGTCTTTATCTTCTTC--------------AGCCACT-----CTTCGGAA-------------------------------------------------T--GGCTGTCACTCTGCAGTTGAGGGCAGCAGTC-ACAGC s rn3.chr2 61744631 791 - 258222147 --TGACAGGAGT-------AGCGGGGACAGAGGAAGCCAGTGGCTGGGGTGGAAAAGATCCTTCAAGTGCAAGGAATCAGGTCAACCAGGAG---------ACTAGGGGAGAATGGGGAGCTCTGGGGATACCCCTCCCTCAAAA---TGCACACATGCATGCATGCATGCATGCACACTCTGGGAAGCAAGTGGAAAAG-GCACCTGCCACTCATGAAGTTACTGCACTTGA-AGTGTCCATGTCCCT----CCCTGTCATGCCTTGACATGCCC----GGCCATGACCTACCTACCTAGTCCCTAATAAGCTCTTCCTCAGACC-------TCAGTCTGAAGACAAGACTCCCAGCCTCT--GTCTCAGCC--------------TTTCTAAA--GGGCAA-----GTAAGACAGTGGTCA-----------------CTTCCAAGCTGACGGCCTGAACCTGGGACATCAGTT----CTCCACAGGGCAGACAATGCCCCTGG----ACCTCGATCACCACAGACAATCCCACACCACCACAGGA----------------GTCTGGAGGCAGACGGTC--TTGATTCTTACATTGGTTTAAGGAGTGGA-------------AAATATTTAATG-------------------TCTCAAATTCTCTCCAATAGAGCTCTGTC--------CTGTGTCCTATGTCCTGTGTGATTTTCAAATGACACTCAT------GAGAATTCTGCCTTTGAGCCTGGAGCCTACTTTCCTTTTCTAGTAAACACAGCAT---T-----TTTTTTCTTCTTCTTCTCCTTCTCCTTCATGTTTTTAATGTATA--GGGCCGACCAGGAGAG---ACCTTTTCTTTATCTTCTTC--------------AGTCAC----------------TCTAATGTGATGGCTGTCATGC---TGCTGCTAGG----------GGC--AGCAGTCACAGCCCCTCTGGCCAT------------- s canFam1.chr17 56837744 885 + 66886099 TGTGACAGTGATCAGAAAAGTGAGGCATGGAGGGGGCCAGTGGCAG-GGCAGCAGGCATCTGTCAAGTTGAGGGAAGCAAGTCTGCCAGGAAGGGAAAGCTACGGGGGAAGAATGAATGAAGGAGGGTGCATG-------TGAGTATGTGCG---------------TCCCACCCCCTCTCAGAGAAGGAGAAAGCAAAG-GTACCTGTCAGCCAAGCAGTTACTACACAGTACAGTTCCTGCATCCTAAGAGCCCCC-----CTCTTCTCTCTCCCCTTGGTCATGCCCTGTCTG---AGCCCCTA--GAATCCCTGCCCAACCT--TACACTCAGCCTGCACTGGAGCTTCCTGGCCGCA-------GGCCCCCGCAGGGAAAGCGTCCTAAGCCCACCAACAGGAGCTTGTTGCTGCCAGCTTAGGGCCCGTGGTGGCTCCCCAG------------------GAcaacaatt----ttcaacagggcag-tgatgccccaagagatatcagggaaatc-------------------tgtgggc-----------------------------aggtc-tttccttgtcacattgattgggtgaggggtgaggggcaggggcaaatgtttaatggactaaagccagcgtttgatgccaacccgtgtctgggacagctccatgcaacacacctctgcttcatgtcttgcatgactttcaaatgacattaatacgggtgaaaacgctgtccctgagcctggaaccaactttcgttttaccatcaccactatatatatatatatatattttttttttt---------ttgcatggttttaacatatgctaggtaaatgaagggagggaggttttcctttatattgttc-acattgctgcaagagtaactcaggatttcggaaaccccgtcagggcagcagcactgctggggctgacaggcctgacagtcggttggtcggtcagtttt--tctagggacagagaagcagtgc a score=9258.0 s hg17.chr13_random 113582 83 + 186858 Gactgtgcctcctagcatagctgtcct-gagcatttacacattgaaacacgttattttaccatgaactac------tttaaaaaaaaaca s panTro1.chr12 22816566 83 - 117159028 gactgtgcctcctagcatagctgtcct-gagcatttacacattgaaacgcattattttactatgaactac--tttttttaaaaaa----a s rn3.chr2 61745422 78 - 258222147 GACTGTGTCCCTTGTTA---CTGTCTTCAAGTAATTATATA-TGAGAGGATGTATTTCGCTAAAAA--AC------TTTATATATATTCA s canFam1.chr17 56838629 85 + 66886099 gcctg-----cccagggtagctgcccctgaccatggatatgttacaatacatcattttattacaaaccacttttttttaaaaaaaaatca a score=6788.0 s hg17.chr13_random 113665 37 + 186858 actttctttatcccacaactaggacagtatagcaaat s panTro1.chr12 22816649 37 - 117159028 actttctttatcccacaactaggacagtatagcaaat s canFam1.chr17 56838714 34 + 66886099 ---tcttttattccataattagtgcactgtaacaaat a score=13992.0 s hg17.chr13_random 113702 53 + 186858 tttaaag---atatgattaggaatgttatattgtatatgaatttcatttctg----ggta s panTro1.chr12 22816686 53 - 117159028 tttaaag---atatgattaggaatgttatattgtatatgaatttcatttctg----ggta s mm5.chr3 59193961 55 - 160575607 TTTAAAGATTATGTGACTAGAAATGTTGCATTCGGT-TTTATTTAATTTCAG----GATA s canFam1.chr17 56838748 60 + 66886099 tttaaagattatgtcagtaggaatgttatactgtctaggaatttcattttaatagcaata a score=5743.0 s hg17.chr13_random 113755 27 + 186858 aagggaatattataaattattacaaaa s panTro1.chr12 22816739 27 - 117159028 aagggaatattataaattattacaaaa s canFam1.chr17 56838808 27 + 66886099 aagggactcttctaaattgttataaaa a score=0.0 s hg17.chr13_random 113782 2 + 186858 at a score=182.0 s hg17.chr13_random 113782 2 + 186858 at s panTro1.chr12 22816766 2 - 117159028 at a score=1356.0 s hg17.chr13_random 113784 3 + 186858 gga s panTro1.chr12 22816768 3 - 117159028 gga s rn3.chr2 61745920 2 - 258222147 -GA s canFam1.chr17 56838835 3 + 66886099 ggA a score=88345.0 s hg17.chr13_random 113787 359 + 186858 gtatatgatctgGGTATGAGCTAAAGTCCTAATTTCTGAGTTTAGGATATTCTTATTTATT-------TAGCAAACTTTCGTCT--GGTCctatgtgctcagcactattctaagcactttataaatattaactatttggtcctcaccaatcctatgaaataaata---ttattcccaattttataaagacacttgcccaaggtcacacagctggcttagtggtagagctgggattcaaacccaggctgtctggtctgtccttgcttttagctattaCATAT---GCCCACCCTCACC--CCGTGCTCCCATGTACAAAAGGGACTTC--TTGATCCCTGCCAGCTTGCCTGGGGGTGAACCCCT-CCCAGACCCCATGC s panTro1.chr12 22816771 360 - 117159028 gtatatgatctgGGTATGAGCTAAAGTCCTAATTTCTGAGTTTAGGATATTCTTATTTATT-------TAGCAAACTTTCATCT--GGTCctatgtgctcagcactattctaagcactttataaatattaactatttggtcctcaccaatcctatgaaataaata---ttattcccaattttataaagacacttgcccaaggtcacacagctggcttagtggtagagctggaattcaaacccaggccgtctggtctgtccttgcttttagctattaCATAT---GCCCACCCTCACC--CCATGCTCCCATGTACAAAAGGGACTTC--TTGATCCCTGCCAGCTTGCCTGGGGGTGAACCCCTCCCCAGACCCCATGC s mm5.chr3 59194266 254 - 160575607 GTATATTAGCCTCACATGA-CCAAAG-CCCAATTCCCCAGGTTAGGGTGCTCTGTCTTATC-------T----------------------------------TCTACCATAAGCGCTTCACACATATTAACTATATGCTCCTCACTACTCCTATCAAGTAAATA---TTACTCCCAATTTCAGAATGATTCTTTCTCA--GTCACAGAGCCAGTGATCTGGTAGACTTGGACTCCCA--CCAGGCCATGTGGCTCACCCTCACCTTTA--------------------------------------------ACAAAAATGA------------------------ACCGGGG------CCCT-CCTGGCTCACACAC s rn3.chr2 61745923 275 - 258222147 GTATATCAGCTATACATGG-CCAAAGCCCCAATTCCCCAGGTTAGGGCGCTCTGACTTAAT-----------AAACTTTTGTCCCAGGCTCTCT---------TCTACCATAAGCTCTTTACGAATGTTAACTATGCACTCCTCACTGGTCCAATCAAGTGAATA---TTACT-CCAATTTTACCAAGATTCTTTCTCA--GTCACAGAGCCAGTGATCTGGTAGGCTTGGACTCCCA--CCAGGCCATGTGGCTCACCCTCATCTTTA--------------------------------------------ACAAGAATGA------------------------ACTGGGG------CCCT-CCCAGCTCCCACAC s canFam1.chr17 56838838 357 + 66886099 TTATACGATCCAAGCATGATTAGAACTCCTGATT-----GCTTAGAATGTTCTTATTTAATacacttatagataacttt-----------ctatgtgctgagcactattctaagcacttcataaacattaactatttgctccccaccagatctaggaaataagtattcttattcccaattttatagaaa---tgggccaaggtcacactgctaat-aaatagtagagccaaggatcaagtccaggctg-ctagtctgtccttgcttttaagcaTAGGACATAGCGCATATGATGACCCTCCGTGCTTCGGTGTATAACCAGGGGCTCCTTTGGCCCTTGCCAACATACCTGGGGCCAGACCCCT-CCTTGACCCCATGC a score=14817.0 s hg17.chr13_random 114146 144 + 186858 TTTAGTCATCTCAAGATAAGCATGCTGCTCCCACCCTCCATGACTATCTTTATTCACACTCTTCTCTGAGCCTGAAATGCTccactcctccttcccaacctcccaccctcacccctaccccattccctcctcacgccccctgcc s panTro1.chr12 22817131 144 - 117159028 TTTAGTCATCTCAAGATAAGCATGCTGCTCCCACCCTCCGTGACTATCTTTATTCACACTCTTCTCTGAGCCTGAAATGTTCCACTCCTCCTTCCCAACCTCCCACCCTCACCCCTACCCCATTCCCTCCTCACGCCCCCTGCC s mm5.chr3 59194520 66 - 160575607 AT----------------------------CCATTCCCGGTG------TTGGTTCAACCTCCATTCTGG---------------------------AAGGTCTAACCCTTTTCCCATCCACAGTCCA----------------- s canFam1.chr17 56839195 128 + 66886099 TTCAGTCATGTCAAAGCATGTATGCTGCTTCCTTCCTCCATAATGTTCTTCG--CACACTCTGTTCCGAGCTTGAGATGTCCCACTG--------------CCCACCCCCAAAACAAGCTGATTCCTTCCTAATGCCTACCGCC a score=0.0 s hg17.chr13_random 114290 14 + 186858 ccctgccccGTGTT a score=-671.0 s hg17.chr13_random 114290 11 + 186858 ccctgccccGT s panTro1.chr12 22817275 4 - 117159028 CCC-------T s mm5.chr3 59194586 1 - 160575607 ----------C a score=318.0 s hg17.chr13_random 114301 3 + 186858 GTT s panTro1.chr12 22817279 3 - 117159028 GTT s mm5.chr3 59194587 3 - 160575607 GGT s rn3.chr2 61746198 3 - 258222147 ATC a score=4608.0 s hg17.chr13_random 114304 124 + 186858 CATGCCCTGTGCTGGCTCTGCCTCCACACCTGTAATGCTTTTCTGCTCTCCTCTGTCCCTAGGCCTGCTGCCTCCCACAGAGCCCGCAAGGCAG--GAACGTGACACACCcatctcagcagcctca s panTro1.chr12 22817282 121 - 117159028 CATGCCCAGTGCTGGCTCTGCCTCCACACCTGTAACGCTTTTCTGCTCTC--CTGTCCCTAGGCCTGCTGCCTCCCACAGAGCCTGCAAGGCA---GAATGTGACACACCCATCTCAGCAGCCTCA s mm5.chr3 59194590 53 - 160575607 GAAGTCCTGTG----------TGCCACACCCAC------------------------------------------------GCCTGCA------------GTGACACACCCA---CACCTACCATG s rn3.chr2 61746201 100 - 258222147 CATTCCTGGTGCTGGTGCAACCTCCAT-TCTGGAAGG--------------------TCTAACCCTATTCCCATCCACA--GTCCACACTGAAGTCCCATGTGACACACCCA---CAGCTGTAGTG s canFam1.chr17 56839323 91 + 66886099 CGTACCCCAGGCCGGCTCTCGCACCAC-CTTGTGACTCTTCCCTG--------------------TGCTCCCTCT------GCCcagg--------aactgggacacacctatttctgcagctgcg a score=2946.0 s hg17.chr13_random 114428 5 + 186858 ccagc s panTro1.chr12 22817403 5 - 117159028 CCAGC s mm5.chr3 59194643 5 - 160575607 CCAGC s canFam1.chr17 56839418 5 + 66886099 ccagc a score=925.0 s hg17.chr13_random 114428 23 + 186858 ccagcatggcaacctggcactta s canFam1.chr17 56839418 22 + 66886099 ccagcatggaaaca-ggcacaca a score=434.0 s hg17.chr13_random 114433 18 + 186858 atggcaacctggcactta s canFam1.chr17 56839423 17 + 66886099 atggaaaca-ggcacaca a score=2314.0 s hg17.chr13_random 114433 17 + 186858 atggcaacctggcactt s panTro1.chr12 22817408 17 - 117159028 ATGGCAACCTGGCACTT s canFam1.chr17 56839423 16 + 66886099 atggaaaca-ggcacac a score=91.0 s hg17.chr13_random 114450 1 + 186858 a s panTro1.chr1 116682499 1 + 229575298 A a score=573.0 s hg17.chr13_random 114451 2 + 186858 gt s rn3.chr2 61746304 2 - 258222147 GT s canFam1.chr17 56839440 2 + 66886099 gt a score=1146.0 s hg17.chr13_random 114451 2 + 186858 gt s panTro1.chr1 116682500 2 + 229575298 GT s rn3.chr2 61746304 2 - 258222147 GT s canFam1.chr17 56839440 2 + 66886099 gt a score=455412.0 s hg17.chr13_random 114453 1198 + 186858 aggtgctca---atgcatGCA-GAGA-----GACAGGGAGGGAGG-----GGCAAGGGGAAAGCAGCAAGAGTCTGCAGGTGGAAATAGCTAA-TGAAGGTTACCCAGATGCGCTCTACCCTGCCTTACCTGTCTGCAGGCAGGGCAGTGACTCTGGCTCGTTGATGCCAAT---AACAAGTGC----------CCCGGTGTTACCATGACAAC-AGGCCTGAGGCATCTGGGAGGGGCTGGGCTCTCCTCTTAGGGCTCTTGCACTCACACCCATTCTATCTTGGCACAGACA----ACAGGCAGAAGC------CACCTGGGATGGAAGAAGGAGAACCC-GGACTCCCCTGAAAGAAGGCAGAGGCCAGTCCTCTGAGGGATGGGGCA----GTCATCCCTCAGAATGTGA-AAGGATAGCCAGTGTTCACATGCTCTGGACTCATGGAAGTCAAAG-AAAAGCCCTCTGCTATCCCAATCTGCCAGGTCAGCAATAAGAAATAGAAGAAAACTGATTTGGCAACATCCAGAGGGTATTAAATATTCATCCTGAGTGCCCATCAGTAAAATCCCAGCAGAATACACCCTCTGACAAGTCAGCTTTCCACCACTGGAGGCTGTCCTCATGGAAGCTTGTTTATGGCTTTGTCAAT--------------TTTAATAGCCAAACCAAGATATTGTCGTAAACATTTGGAAAATGAGTGCTGACATTTCCCTTACTGCTTCTGTATTTAGGGATGTGTAATTGGAGGGCGTTTT---GAGCTAAAGAAAATCAGAAGGAAGCAAGGCA----------------------ATTATGCTTTACAATTAAAAG---AGAAAACTGATTAAGAGCTAACAATCAAATATGT-GAACTGGCTGAAAGTCTTGCCTAAGCACCCCTTGAGGGGTCACACTATGTGATCAATGGGG----ATCAGACTAAGCTA---GATC--AATGGCAACATGACAGT-CATGGCATTCC--TTGAAGATTCT---GTTGGGGATGTGCATACGCAACAGGAAGCACACACAGGGCATGG------------TCAAATAACAGATCC--------------------ACA--AGTCAACTGTGCCA-------------TCCAACCAGAGATTCTGATGAAT----------ACTGATATGGGG---------------GCAGGATCAGCAGGGACGAGTCTGGGGCACAGACCACAGAGAA--GCTTG---CTGTGATAAATGATATC---ACAGCAGTGGAAGGCTGATGGTAAATGG------------ACCAGCA---------TGAGTGAGCCAACAGTCCCTGGGTTCCTATTTGATTCTGATGGAATACGAATATTTAACACAATATTCT s panTro1.chr1 116682502 1199 + 229575298 AGGTGCTCA---ATGCATGCA-GAGA-----GACAGGGAGGGAGG-----GGCAAGAGGAAAGCAGCAAGAGTCTGCAGGTGGAAATAGCTAA-TGAAGGTTACCCAGATGAGCCCTACCCTGCCTTACCTGTCTGCAGGCAGGGCAGTTACCCTGGCTCGTTGATGCCAAT---AACAAGTGC----------CCCGGTGTTACCATGACTAC-AGGCCTGAGGCATCTGGGAGGGGCTGGGCTCTCCTCTTAGGGCTCTTGCACTCACGCCCATTCTATCTTGGCACAGACA----ACAGGCAGAAGC------CACCTGGGATGGAAGAAGGAGAACCCCGGACTCCCCTGAAAGAAGGCAGAGGCCAGTCTTCTGAGGGATGGGGCA----GTCATCCCTCAGAATGTGA-AAGGAGAGCCAGTGTTCACATGCTCTGGACTCATGGAAGTCAAAG-AAAAGCCCTCTGCTATCCCAATCTGCCAGGTCAGCAATAAGAAATAGAAGAAAACAGATTTGGCGACATCCAGAGGGTATTAAATATTCATCCTGAGTGTCCATCAGTAAAATCCCAGCAGAATACACCCTCTGACAGGTCAGCTTTCCACCACTGGAGGCTGTCCTCATGGAAGCTTGTTTATGGCTTTGTCAAT--------------TTTAATAGCCAAACCAAGATATTGTTGTAAACATTTGGAAAATGAGTGCTGACATTTCCCTTACTGCTTCTGTATTTAGGGATGTGTAATTGGAGGGTGTTTT---GAGCTAAAGAAAATCAGAAGGAAGCAAGGCA----------------------ATTATGCTTTACAATTAAAAG---AGAAAACTGATTAAGAGCTAACAATCAAATATGT-GAACTGGCTGAAAGTCTTGCCTAAGCATCCCTTGAGGGGTCACACTATGTGATCAATGAGG----ATCAGACTAAGCTA---GATC--AATGGCAACATGACAGT-GATGGCATTCC--TTGAAGATTCT---GTTGGGGATGTGCATATGCAACAGGAAGCACACACAGGGCATGG------------TCAAATAACAGATCC--------------------ACA--AGTCAACTGTGCCA-------------TCCAACCAGAGATTCTGATGAAT----------ACTGATATGGGG---------------GCAGGATCAGCAGGGACGAGTCTGGGGCACAGACCACAGAGAA--GCTTG---CTGTGATAAATGGTAAC---ACAGCAGTGGAAGGCTGATGGTAAATGG------------ACCAGCA---------TGAGTGAGTCAACAGTCCCTGGGTTCCTATTTGATTCTGATGGAATACGAATATTTAACACAATATTCT s mm5.chr3 59194648 1220 - 160575607 AGGTGCTTAAACATGCCCGCA-GGGGCAGGTGGCAGGGGCAGGGGCAGGTGGCAGAGGGAAATCGGCAAGGGTTGGGAAGT-AAAAGAGCAAACTGAGAGAAGCCCAGGCACACCCTACCCTGCCCAACCTTTATGCTGACAGAGCAGTGACCCTGACTGACTGCCGCCAGT---AACTGACATCGGGCAGACACCTGCTGCCACCATGGCAAC-AAGGCTGAAGCACGAATGGAGGGCTGAGACCTTCTCTAAGGGCTTGTTCACTCAGGCTTGCCCAGCCCT-GCATAGACACCAGGCAGGCAGAAGT------TGCGTGGGTTG---GAAGGAGAACCC-AGGCTGCCCAGGGAGAATGCAG-GGCCACTTCTCTG----------------GTC------------------AGGACAGCCCATGCTCACATACCCAAGACT----------------------CTCGGCTAGCCCAATCTGCCAGGTCAGCA--GAGAACATGAAGCAAACAGATTTGGCAACATGCAGAGGGCATTAAATATTCATTCCGACTGCCCATCAGTCTGATCCCAGCAGAATACACCCACTGACAAG-CAGCCTTCTACCACCGGACGCTGCCTGCCTGGAGGCTTGTTTATTGCTTTGTCAATTTTAATGCACAATATTTAATAGCTAGACCGAGGGATAGTCGTAAACATTTGCAAAGTGAGTGCTGACATTTCCCTTACTGCTTCTGTATTTAGCCATGTGAAATTGGAGGGTGTTTTTTGGAACTGAAGAAACTCAGAAGGAAGCAAG-------------------------ATGATGCTTCACAACTAAAAG---AAAAAACTGAACGAG-------AATGGAACACCTCAAACTGACC--AAGTCTTGCCTCAGTGCTCCAT--GGGGTCATAGTATGGGGT-----AGG----ACCAGACTAAATCAAGGGAAG--AAAGGGAGGCTAACTATGGATCGATCGCC--TTGGGGATCCTAGGATCCATGGCATGCTTATG-GATTGGAAGTA--------------------------GCCAATGATAAATCCGCGGCAAGTCACTTCTGATGGCA--AGGCGCCCACGCCA-------------GCTAACCAGAGAGCTTAATGGAGAGA-------ACAGCCACGCTGCAGTCC--CCACCA-GTGGCTCTGGCAGAAAGCAGTCT-GGGTACAGGCCGCACAGAATGGAATGGAACAGGGACAAAGGCCTTCTTTGCAGCAGTGGAA-GCCGATGGTAAATGGTCTGAGCTAGTCACTGGTGCCTGGGCTCTGAGCTAGTCACCGGAGCCTGGGCTCCCTGGTGATTCTCCTCAGATAAGAACATTCACTAAGATATTCA s rn3.chr2 61746306 1173 - 258222147 AGGTGCTCAA--ACGTGCCCA-GAAG-----GGCACCAGCAGGTG-----GGCAAAGGGAAAGCAGCAAGGGTTGGGAGGT--AAACATTAAA-TTGGGAGAAGCCAGGCACACCCTACCCTGCTCAAACTGTCTACAGACAGAGCATTGACCTTAACTGACTGCTGCCAGT---AACTGACATCAGGCAGATACCTGCTGCCACCATGGCAAC-AAAGTTGAAGCATGAATG---------GACCTTCTCTTAGGGCTCTTACACTCAGGCTTGCTCTGTCCT-GCATAGACACCAGGCAGGCAGAAGC------TGCAGGGGTTGGAAGGAGGAGAACAC-AGGCTGTCCAGGGAGAATGCCA-GGGCACTTCTCTG----------------GTA------------------AGGACAGCCCATGCTCACATACCCCGGACT----------------------CTCAGCTAGCCCAATCTGCCAGGTCAGCA--GAGAACATGAAGAAAACAGATTCGGCAACATGCAGAAGGCATTAAATATTCATGC-GACTGCCCATCAGTCCGATCCCAGCAGAATATACCCACTGACAGG-CAGTCTTCTACCACCGGACGCTGTCCGCCTGGAGGCTTGTTTATTGCTTTGTCAATTTTAATGCACAATATTTAATAGCTAGACCGAGGGATAGCCATAAACATTTGCAAAGTGAGTGCTGACATTTCCCTTACTGCTTCTGTATTTAGCCACGTGAAATCGGAGGGTGTTTT-TGGAGCTGGAGAAAATCAGAAGAAAGCAAG-------------------------ATGATGCTTCACAACTAAAAGA-AAAAAAACTGAAGGAGAA--GAGAATGGAGCACACTGGACTGGCC--AAGTCTTGCCTCAGTGTCCCAC--GGGGTCACAGTATGGGATCAAACAGATAACACTAGACTAATCAA---GGACAGAAAGGGAGGCTAACTATCGATCATCGATCGATCGATGATCGC---CTTGGGGAT-----CACAGGTTCTGTAGCATGCCTATGGATTGGAAGTA-------GCCAATGATAAATCT--------------------GCAGCAAGCACCTCTGACAGCAAGGCGTCCATGCCAGCCAGAG--CCTGAGGAAGGAAGTGAACGGCAGTTCTGCAG---TCC--CTGTCA-GCAGCTCTGGCAGGAAGTAGTCA-GGGTACGGACTACACAGAA--TGTGT---CAGGGACAAAGGCCTTC---ACAGCAGTGGAC--------------------------------------------TGAACTAGTCACCAGGGCCCGAGTTCCTTGTTAATTCTCCTCAGATGAGAACATTCACTAAGATACTCC s canFam1.chr17 56839442 1251 + 66886099 aggtgctcaaACGTGCTTGCACGAGG-----CAGTGGGAGGGAGG-----AGCGAAGAGAAAGTAGCAAAAGTTTGGAAGTGGAAACAGCTACTCAGGAGTAACCCAGACGTGCC--------------CTGTCTGCAGACAGAGCAGTGACCCTTA-----TGCAGGGAGTGTGAGCAGGTGC---------ACCTGGCGTCACCATGACAACGAAGCCTGAGGAGTTGGGGGCGGGCTGGGGACTCCCCT-AGGGCTCTGGCACTCCTGCTCCCTGTCTCTGAGCACCGAGC----GCA---AGAAGCCTTTTGCACACAGCATG---CGAGGAGAACCCCAGGTTCTCCTAGAAGTAGG----GGCCAGTCCCACTAGGGATGAGGCAGCCTGTCACTTGCCAGACTGTGACAAGGGCAGCCACTGCTCACATGCCCTGGACCCATGCAAGTCAAAGAAAAAGCGCTCAGCTCTCCCCATCTGCCAGGTCAGCAATAAGAAATTGGAGAAAACGGATTTGGCAGCATCCAGAGGGTATTAAATATTCATCCTGACTACCCATCAGTAAAATCCCAGCAGAATACACCCACTGACAAGTCGGCTTTCTA-CACCGGAGGCTGTCCTCTTGGAAGCTTGTTTATTGCTTTGTCAATTTGAATGTGCAATATTTAATAGCCAGACCAAGAGAGGGTCATAAACATTTGGAAAATGAGTGCTGACATTTCCCTTATTGCTTCTGTATTTAGGGATATGTAATTGGAGGGTGTTTT-TGGTGCTAGAGAAAATCAGAAGGAAGCAAAGCCCTGCTTCAAAAAAAATTTTTTTTTCCTGCTTCAAAATTAGAAGAGAAAAGAATTGATTACGAGGGAAGGATCGAATATGTTGAACTGGCTTAAAGTCTTGCCTAAATGCCCCGTG-GGGGTCACACTCTATGATCAATGGGA----GTCAGGCTGAGCTA---AATC--AA---CAAAATGGGAGT-GATGGCATTCC--TGGAAGATTTC---CTTGGGGACCAGCAGATGGAACAGGAAGTAGGTAAAAGAAAAAAAAAAAAAAAAGGGTCGATAATAGATCC--------------------AC---AATCGATCGTGCCA-------------TCCAGCCAGAGATTTTAATGAATCAGATA----CCTGTGATGTGG---TCAGGCCATCAGGTGGCCCTGGCAAGAACCGATCTGGGGCACAGATCACACAGAG--CCCTT---TTGGAGCAGAAGACATG---AC--CAGTGTAAGGCTGA---TAAATGG------------ACCCGCA---------TGGGAGAGCCAACAGTCCCTGGGTTTCTCTTCGATTCTT-TGGAATAAGAATATTTGACAAAATATTCT a score=66107.0 s hg17.chr13_random 115651 298 + 186858 TTAAAACAGGGG----------TAGCAGGGGACACTTCTATGGAAGACACCAGAGCAGGGCTAAGAATCTATGTTTTGAGGGGCAAGGTATGCAGGGAGAGCA-AAAGAAGAGAGGACAGCGCTGGTTCTGAGCTCTGGTATCCCCAGGTCTTA-GAGCCACCTTGTGGCAGAAGCTGGAAGAATCA---GGAGTTAAAAGAGGCACAAGATAAAACTTCTACACCATCAGCAAACTGTGTCTTGAGGAACCTCTACCAGTGTCTTATGACCCCAACT-----------------------TCCAAAAAACAAATTTAAGGATTT----------GCTAAAGGGGA s panTro1.chr1 116683701 298 + 229575298 TTAAAACGGGGG----------TAGCAGGGGACACTTCTATGGACGACACCAGAGCAGGGCTAAGAATCTATGTTTTGAGGGGCAAGGTACGCAGGGAGAGCA-AAAGAAGAGAGGACAGCGCTGGTTCTGAGCTCTGGTATCCCCAGGTCTTA-GAGCCACCTTGTGGCAGAAGCTGGAAGAATCA---GGAGTTAAAAGAGGCACAAGATAAAACTTCTATACCATGAGCAAACTGTGTCTTGAGGAACCTCTACCAGTGTCTTATGACCCCAACT-----------------------TCCAAAAAACAAATTTAAGGATTT----------GCTAAAGGGGA s mm5.chr3 59195868 265 - 160575607 TTAGG------------------------------------GGAAGATGCTAAACCAG--------------GCTTGGAGAGGCAGGCTCCACAGGGAGGGT-----------GGGACTGAGGAGGCTT---GCCCTGCTTTTCCCTGGTCCTA-GAGCCACCTTGTGGCAGAAGTTAGAAGAAATAAAGGAACCCAAAAGAGGTA-GATATTTGGTTTC---ATCTTTAACAACTTATGCCTCAACGAAGCTCCA--AATGCTTTGTGGCCTTAATGCTACAAAACCAAGACTCAGGGAACCCAGACCACAAACCAGAGTGTCC----------ACTCAAGGAAA s rn3.chr2 61747479 256 - 258222147 TTAGG---------------------------------GGCAGAAGACGCTAAACCAG--------------GCTTGGAGAGTCAGGCTCCCCAGGGAGGGT----------GGAACCCAAGCAGGCCA---GCCCTGGT-TTCCCTGGTCCTA-GAGCCACCTTGTGGCAGAATTTAGAAGAAATAAGGGAATCTGAAAGAGATG-GATATTTGGGTTT---GTCATTAACGACTTATGTCTCAATGAAGCTCCA--AAGGTTTTGTGGCCTTAATGC----------------------TACAAATCAAATACCGAGGGAATTCAGACGACAAACCAGAGTGGA s canFam1.chr17 56840895 290 + 66886099 TTAAAGGAGTGGAGGGAGCAGTTGGCAGGGGACGCTCCTATGGAAAGCCCCAGAGCGGGGATAAGCAGCCATGTTTTGA--GGCAAGGAATGGAGGGAGAGTACAAAGAAGAGAAGCCAGCACTGGTTTGGAG-TCTAGTATCCCCAAGTTTTAGGAGCCATCTTGTGGCAGAAGTTTGAAGAAACG---GGAGTTAGAGGAGGCA-TAAATTAAACTCCTACACCATCAGGACTCTATG------------------ACTCCCTCGTGACCCCAACTTG---------------------AAAAAAAAAAAAATTTAACTATTT----------GCTTATGAGTG a score=4086.0 s hg17.chr13_random 115949 44 + 186858 TTAGGAA----ATCAGGAGTGGTTAACCAGAGAGAGGAA-----------ACACTAAAT s panTro1.chr1 116683999 44 + 229575298 TTAGGAA----ATCAGGAGTGGTTAACCAGAGAGAGGAA-----------ACATTAAAT s rn3.chr2 61747738 59 - 258222147 TCAGGGAAAATACCTGGTCTTGGCATCCTGGGAGTAGAATGCTTGTTTGCACACAAAAA s canFam1.chr17 56841185 30 + 66886099 TCAGGAA----ATCAAGGATGGTAAACCAGAGAC------------------------- a score=222630.0 s hg17.chr13_random 115993 788 + 186858 ACAAGCATACGTTACCAAAGAGGATTCCTGAGAAGAAAAA-----------------------------CACTTGTCTAGaacatata----ataataaaattaggaacttggactctggagccaaactgcctgtctggacttgaatcctggctctgccacttactatggcacactgggcaatttatgtaacttctgtgtcagtgtcctcatctgtgaagttgggtaaaatggt-ccccctcac-----agcactgcatggattaagaaacaaggaa-ctaagttattatg--tgtaaagcattcccagtggtt-------tacaagaaatgctcagtgaatattagc---------tgctactGTTGTTACTACCAGTAACACTAGTGCCATAACTCCTCCACATCATCAATCTACAAGGAGAAAATTCTTCTGTAAAGGACAGCATTAACTGAATGCAGAAAGAAGAATCTCTGATTACATAGCCTTTAAA--AAGGTCAAAGTCTCC-------CTACCGCAATTACTTTTTAACGaggcacacctggattcaaatcccaacttcccccactcacta-----ggtgtttaatttgaggaactgagaacctctcagagcctctgttacttcattta--taaaatgggaaagcaatatgttcctccc---------agggttgcagtgaagattaagtgagataatatacaccaagtgtccaaca--gtctccagcgcacagtcagctctcaTGTATTTTTCCACTTCTATTTCCCCAAAATGAATGCAC-CAGCACCAA--AGTAAATAAGAAAGA-----GTAAAAACTCTTATGAAGCTCTCTGGAAAATATTAAGTGCTAAATGCATAAATATTTA s panTro1.chr1 116684043 788 + 229575298 ACAAGCATACGGTACCAAAGAGGATTCCTGAGAAGAAAAA-----------------------------CACTTGTctagaacatata----ataataaaattaggaacttggactctggagccaaactgcctgtctggacttgaatcctggctctgccacttaccgtggcacactgggcaatttatgtaacttctgtgtcagtgtcctcatctgtgaagttgggttaaatggt-ccccctcac-----agcactgcatggattaagaaacaaggaa-ctaagttattatg--tgtaaagcattcccagtggtt-------tacaagaaatgctcagtgaatattagc---------tgctactGTTGTTACTACCAGTAACACTAGTGCCATAACTCCTCCACATCATCAATCTACAAGGAGAAAATTCTTCTGTAAAGGACAGCATTAACTGAATGCAGAAAGAAGAATCTCTGATTACATAGCCTTTAAA--AAGGTCAAAGTCTCC-------CTACCACAATTACTTTTTAACAaggcacacctggattcaaatcccaacttccgccactcacta-----ggtgtttaatttgaggaactgagaacctctcagagcctctgttacttcattta--taaaatgggaaagcaatatgttcctccc---------agggttgcagtgaagattaagtgagataatatacaccaagtgtgcaaca--gtctccagcgcacagtcagctctcaTGTATTTTTCCACTTCTATTTCCCCAAAATGAATGCAC-CAGCACCAA--AGTATATAAGAAAGA-----GTAAAAACTCTTATGAAGCTCTCTGGAAAATATTAAGTGCTAAATGCATAAATATTTA s mm5.chr3 59196288 741 - 160575607 ATATACACACTGTACCATAGGCTACTAGGGAGAGAAGAAAGCGTAAGTCAGTAAAAC-----TTTGGCTCAC-TGTCTACAGAGTAT-----ATAATAAAATTA-AAATTTTAGCTCTGGAGCCAGACCGCCTGTTTGGACTTGAATCCTGGCTCTGCCACTCATCATGAATCATTGGGCAACTTATTCACCCTGGGTGGCAGAGTCCCCATCTGT-AAGCTGCGTCA---GGC-ACCACACACCCATTGACCCTGCATGGATTAAGGAAAAATCAAGTTAAGTTATCAGA--AGTAAGGCATTTACACTG-------------CAGACAGCCACA---------------------CATTGCTACTGTTACGTTAAATTCTACCACAGCTGAGGCTCCGGCACACC-----------AGGGAAAACATGTTCCATAAGAGATGTCCTGGGTCGAATGCAG-AAGAATAAGATGAGATTACACGGTTTCAAAAAGAAGGGCAAAGTCTCC-------CCACTACCAGCACTTTTCATTAAAGCATGCCTGGGTTTGGATTCCAA--TCTCCCACTCACCGCTAATGGTGGTGGAGTTGGGGGGCGA------------------TGTTTGACTGTTTAC-TATCAGGTGATAGC--TACATTCCTTCTTCTACTTGGGGTGTTACTGCAAAGAGTTAGGGAGATAACACACTCCAAGAACCCAACACTGTCTCCAGCACTCAGTC----------------TCC-------CTTCCCCCAGACGAAAGCAC-CTGCACTAG-CCGTGCATTTTAGAGA--------------------AAGCTCTTTGGAACATATTCGGTTTTGAGTGCATAAATAATTA s rn3.chr2 61747849 760 - 258222147 ATGCACACACTGTGCCATAGGCTGCCAGGGGGAAAAGAAAGCATGAGTCAGT-----AAAAATTTGACTCAT-TGTCTATAAAGTAT-----ATAATAAAATTA-AAAATTTAGCTCTGGGCCCAGACTGCCTGTTTAGACTTGAATCCTGGCTCTGCCACTCATCATGAATCACCAGGCAACTCATTCACCCTGGGTGGCAGAGTCCTCATCTGT-AAGCTGCGCCA---GGCACCCACATACCCATTGACCTTTCGTGGATTAAGGAAGACTCAAGTTAGGTTATCAGA--CGTAAGGCATTCACAATG-------------CAGACAGCCACA---------------------CATTGCTACTGTTGTTTTAAATCCTACCACAGCTGAGGCTCCGGCATACCAGGAACATGCAAGGAAAAATATGTTTCATAAAGGATGTCATGGGTCGGCTTTGGAAGGAAGTAGCTGAGATTACATGGTTTAAAAAAAAAGGGCGAAGACTTT-------CCGCTAGCAGTACTCTTCATTAAGGCATGCCTGGGTTCCAATTCCAG--TCTCCCACTCACTGCTGAGGGTGTCTCAGTT---GGACTGAGA---------GGGCACTGTTTGACTGTTCACTTAACAAATGGAAGC--CGCATTCCTTCTTCTACCT--GGGGTTCCTTCAAAGACTCAGGGAGAGAACACACGCCAAGTACCCAGTACTGTCTCCAGCACTCGGTC----------------TCC-------TTTCCCCCAGACGAAAGCAC-CTGTGCTAGCCCGTGCATTTTAGAGA--------------------AAGCTCTTTGAAAAGTATTCGGTTAGGAGTACATAAATAATTA s canFam1.chr17 56841215 775 + 66886099 AAAAGTACCTGATACAAAAGAGGATTCCTGAGAAGAAAAT-----------------AATAAT------AAT-CGTCTAGAAAATAtgtaatataataaaattaagagcttggattctggagccagactgcctttctggatttgaatcttgcttctgccacttattatgcatcactggatcatttatttgccctctgtgtcagcatcctcgcctat-aaaatgggtga---gac--------at-----ggtatctcaagagccaag------------taagctattgtgtatgttgtgtattcgggatggtgaccgacacacaagaagtgctcaagaaacatcagctgctgtCGTTGTTACTGTTCTTACTACTATAACCACCTGTGCTGAGACTCCTCCATGCCAGCGATCTACACAAAGAAA---CTCCTACAAATGAGGCTGTTAGCTGAAGGCAGAAAGCACGATCTCTGACTATGTGGGCTTAGAG--AAAGTCAAAGCCCCCCTTTTATCCAGCACCACTgcttttgaacacagcacacgtgggttcaaatcctga--tctccccttcgccacttactgtg----acgtcagcagatcagaacctctgtgggcctcagttacttcattta--taaagtgggagag------------------------ggtaatG-GGCGAGGGCGACATGAGATCACACAGGCCAGGTGCCCGACA--------------TGGTCAGTGCTCTGGTATTT-TCCACTTCTAATTTCCCCCACCAAGAACACATAGTACCAACCAGAGTGTGGGAGGGGAAAAAGTAAAAACGTAGGGGAGGCTCTTTGGGGAAGACGAAGTGCTAACTGCATAAATATTTA a score=25250.0 s hg17.chr13_random 116781 118 + 186858 ATAGAGGAGAGACAGTAACACTTAAGGGGATGCACTCT-CCTG-GTGCCTCAACTGCCCTCTGGGAGTCCTGCACGGCCTCAAGCACCCACCTTTGCCCTTCCTAGCCTCCAAAGGGTCA s panTro1.chr1 116684831 118 + 229575298 ATAGAGGAGAGACAGTAACACTTAAGGGGATGCACTCT-CCTG-GTGCCTCAGCTGCCCTCTGGGAGTCCTGCACGGCCTCAAGCACCCACCTTTGCTCTTCCTAGCCTCCAAAGGGTCA s mm5.chr3 59197029 102 - 160575607 GCACAAGACAG--AGTAACACTT-AGGGAGCGCACTCTCCCTT-GTGCCTCAGCCG--TGCTGGGAGTC--AAACGGCTTT---------CCTTTGCTCTTCCCATTTTCC-AAGGGCCA s rn3.chr2 61748609 85 - 258222147 GCACAAGACAGACGGTAACACTG-AGGGAGTGCACTCT-CCTGCATGCCTCGGCCA--CGCTGG-------------------------------GCTCTTCCTAGTCTCCAAGGGGCCA a score=6085.0 s hg17.chr13_random 116899 46 + 186858 TAAAAGTATATTACTGTGCACCTTTAAGTAGCGGTCTCATAACAGC s panTro1.chr1 116684949 46 + 229575298 TAAAAGTATATTACTGTGCACCTTTAAGTAGAGGCCTCATAACAGC s mm5.chr3 59197131 45 - 160575607 GGACA-TGTGTTACTGGCCACCCATAAGAGCAGGCCTCGTGATGGC a score=40332.0 s hg17.chr13_random 116945 440 + 186858 CTAAGTACAGTGATACTCATAAGTCTCCTCTGCCAACCACTGTTCATTCTCATTTTACAGTGAAAACACAACAGAAACCAACTCAAGACACCCAAGACACAAAGACAACCTCAGAGCAGATCTGGGGTCTCCCAACCCTCCAGCTACTTTACCCAGAAGGCAATT-ATGGTATAAAGGAATACATTTGCTCTAtggaagtcagagatacctgggctccaatctcagttcaaatctcagttttgccccttaaccagctggcttgcctccatcaagattcctgaccactttgagccttggtttcctcattagcaaaatagggatacaaacacctacattattaggttgttggataaatttaaaaaagaaaacatgagtaaagcactaagcacaaacctggcatccaagaggtacttcatacatATTTTTCCCTGTCTGCCTTT s panTro1.chr1 116684995 441 + 229575298 CCAAGTACAGTGATACTCATAAGTCTCCTCTGCCAACCACTGTTCATTCTCATTTTACAGTGAAAACACAACAGAAACCAACTCGAGACACCCAAGACACAAAGACAACCTCAGAGCAGATCTGGGGACTCCCAACCCTCCAGCTACTTTACCCAGGAGGCAATTAATGGTATAAAGGAAAACATTTGCTCTAtggaagtcagagatacctgggctccaatctcagttcaaatctcagttttgccccttaaccagctggcttgcctccatcaagattcctgaccactttgagccttggtttcctcattagcaaaatagggatacaaacacctacattattaggttgttggataaatttaaaaaaaaaaacatgagtaaagcactaagcacaaacctggcatccaagaggtacttcatacatATTTTTCCCTGTCTGCCTTT a score=1383.0 s hg17.chr13_random 117385 5 + 186858 AGTAA s panTro1.chr1 116685436 5 + 229575298 AGTAA s rn3.chr2 61749519 5 - 258222147 AGTGT s canFam1.chr17 56842165 5 + 66886099 AATAA a score=264022.0 s hg17.chr13_random 117390 673 + 186858 CACCATAAATT--------AATCCAAATAATTAGAACCTTCAATGAACTAATTCTGTATTCTTCCCTTAGGCACTCCAGTCTTAGATTCCAAGTAATACCAGAAATAGGCAAATACTAGGGATGGATTCAAAAAGGCAATGTCAGACAAGGTCTTGAGGTCA-GCA---TCTCCTCTACCTTCTACAGCTGCAGAACCATGTGATGGGCAATGCTGCTCAGAAAACTGACTTTGAGAGCCAGAGGGGACCAAAAAAGGTG--CAATTACAATCCTAATGTCCCACTCAATAACGCAGGCAAGTGGGTACCTCGACATTTTC-CACAACAAGGGTTCACATAAAATGGGGTCTCTGCTTAACCTTCCACTAACCTGAAAATCCACTTAAGTAAAACAGCCTCTTCCCTGAGCCTCTTGTCAGTCAAAGTTTAGGCTCTCGTTGGCCAAGGGAACAGTCTC-ATCATTTATACAACTCACTTGTTCCAAA-TCTGGTACAGAACAGAACTCTGCTATGGGGTTGGAAGAGGTGAAGGAGAAACCCAAAGGTTACCGTTATTTAACCTCACGTTGCTGAAAACAACACTGT----GGCCACCTAAAGTAGTCGGGCAGACCAGGTCAGGCCCTAACCAT-GGCTGTTAGTGGGCAGAAAAATCCCTTTGGCAAGGCGTTCCAGCCATCTTTGCAAAGT s panTro1.chr1 116685441 674 + 229575298 CACCATAAATT--------AATCCAAATAATTAGAACCTTCAATGAACTAATTCTGTATTCTTCCCTTAGGCACTCCAGTCTTAGATTCCAAGTAGTACCAGAAACAGGCAAATACTAGGGATGGATTCAAAAAGGCAATGTCAGACAAGGTCTTGAGGTCA-GCA---TCTCCTCTACCTTCTATAGCTGCAGAACCATGTGATGGGCAATGCTGCTCAGAAAACTGACTTTGAGAGCCACAGGGGACCAAAAAAGGTG--CAATTACAATCCTAATGTCCCACTCAATAACGCAGGCAAGTGGGTACCTCGACATTTTC-CACAACAAGGGTTCACATAAAATGGGGTCTCTGCTTAACCTTCCATTAACCTGAAAATCCACTTAAGTAAAACAGCCTCTTCCCTGAGCCTCTTGTCAGTCAAAGTTTAGGCTCTCGTTGGCCAAGGGAACAGTCTC-ATCATTTATACAACTCACTTGTTCCAAA-TCTGGTACAGAACAGAACTCTGTTATGGGGTTGGAAGAGGTGAAGGAGAAACCCAAAGGTTACCGTTATTTAACCTCATGTTGCTGAAAACAACATTGT----GGCCACCTAAAGTAGTCGGGCAGACCAGGTCAGGCCCTAACCATGGGCTGTTAGTGGGCAGAAAAATCCCTTTGGCAAGGCGTTCCAGCCATCTTTGCAAAGT s mm5.chr3 59198019 607 - 160575607 CATCATGAATTTGAGTCAGGATCCAAACAAGGAGCACCTT-AATGAACTAGCTGTGCACGTGTGCTTCAGG-GCTCCAGCCTTCGATTCGGAGTGGTAACAGAAACAAGCAAACAGTAGGAACTTATTCAGCAGGGCAATGACAAGCAAGGTCTAGGGGTCATGCATGGTCTCTGCTACCTTCCCAAGCTGTAAAGCCATGTGACAGGTACTTCTGC-CAGAACCCTGACCTTGAGTGACAGA------CAACAGAAATG--CAGCTACCATCCCAAGGATCGACTCCATAAGGCA-GCCGGCGGGGAGCT--GCATCTTC-C---CCAAGTGCTGACATAAAATGGGGTCTCCGCTTAACCCCCCATTAACCTGAACACCCACTTAAG---AACGGCCTCTTCTCT-AGCATCCTGTTGGCCCAA--TTCCGCTCTAATTGGCC-AGATAAGAGTCTC-AACATTTCTAAATCCCATTTGTTCCCAA-TGGGGTACAGAAAAGGCTTCTGTGACAGGGTCAGGCGAGGGGAAGGATGACCTCAG---------------------ACACTGGTGAGAACTTCCCTGTCAGGGGCCCTCGGAAGCA---------ACCAGGCTGGGCACTAATCAC-TGCTGCTA--GGATAGGAGGAC----------GGGTGCTC------------------ s rn3.chr2 61749524 627 - 258222147 CATCGGAAATTTAAATCAGAATCCCAACAATGAGCACCTT-AATGAACTAGCTGTGCACCTGTGCTTCAGG-GCTCCAATCTTAGATTCTGAGCAGTAAGAGAAACAAGCCAACAGTAGGAGCTTATTCAGCAGGGCAATGACAAGCAAGGTCTGGGGGTCA-CTG---TCTCTGCCACCTTCCCAAGCCGTAAAACCATGTGACAGGTACTGCTGCTCAGAACACTGACCTTGAGTGACAGACAAGA-CAAGAGAGATGCACAGTTACCATCCCGAGAATCTACTCCAGAAGGCA-GCGGGAAGAAGCC---ACATCTTC-C---CCAAGTGCTGACATCAAATGGGGTCTCCGCTTAACCTCCCATTAACCCGAACAGCCTCTTAAG---AACAGCCTCTTCTCC-GGCATCCTGTTGGCCCAA--TTCAGCTCTAATTGACC-AGATAG-AGTGTC-AACATTTCAAAATCCCATTTGTTCCAAA-TGTGGTACAGAAGAGGCTTCTGTGACAGGGTCAGGCAAGGGGAAGGATGAACTTGG---------------------ACACTGCTGAGAACTTCCCTGTCTGTGGCCCTCGGAAGTG---------ACCAGGCTGGACACCAATCAT-AGCAGTTA--GTGCGGGAGGGA----------GGGTGCTCAAAGCATCTTTGCAAAGT s canFam1.chr17 56842170 660 + 66886099 CACCATAAATT--AATCAGAATCCAACTAACTTGAACCTTTGATGAGCTACTTCCTTAGCCTTCCCTTAGGTGTTTCAGCTTTAGATTCCAAAGAGGGACAGAAACAAGCAAGTATCAAGAATTGATTCAAAAAGGCAATGTCAGGCAAGGTCCTGGGGTCA-GCA---GTAAGCCTGCCTTCTACAACTCCAGAACCACGTGATGGACACTGTGGCTGACGACGCCGACCTCGAGGGCTAGAGGAGACCACAAAATGCG--CAATTACAATCAGAATGTCCCAGTCAGTGAGGCAGGCAAGTGTGTCCCTCGGCATTTCCAC---GAAAGGGGTCACACAAAATGGGGTCTCTGCTTAACCCTCCATTAACCCAAAAATCCACTTAAGCAGCACAGCATCTTCTCTGAGCTTC-TGTT-GCCCAGGCTGAGGCTCTAATTGGCCAAGGGACCCCTTTCGATCATTTAGACAATCTGCTTGTTCCAAACTCTGGAACAGAACAGGGCTTT--TATGGGGTTAGAAGAGGCCAAGGGTAAACTCAGACAATCCCACTGGGTA-----ACCACCCTGTAAACCACA-TGC------------AACGTGATGGAACAGGCCAGGTTGGGCACTAACCAC-GGCTGTGAG-GGGCAGAAAATTCCTCTTTGCAGGGTGTTCAAGCCATCTTTTCAAAGT a score=82975.0 s hg17.chr13_random 118063 557 + 186858 CAAACCCT-------------------------TGCCTTTGCCTGCACAGGTGTCTGTTCCAGCCGAGGCACGGGCTGGGTGAGGGAAGGAACACAGGAGCCTACCGCCTGGGCTCCACCCTCCA-CCAGCTTCTAACCTGGCAGGAGACAAGGAC-AG--ATGGAGGAAAAC-CATAAGAGCTGCATGTA---CTTAACTCCTCCCGCATGTCAGCGGAAGAGCCTGATGAAGGCGAGAGTGTTTGCAGAAAGC---------------------CCCACTGACTAATGCTCCCCAAATTAATGCATCCTGATGATCCGCTTTGA--GACAGACTCAGCCTCCAT-AGAGAAAGGAGCTCAAATTCAGGGCCCATACAACTGGACAGGGCCTGGGTGCAGGCAACATTGtgggagacaaccgg-ggttcaaatcctggctccaccattcactaggtacatgaccttaagctagtcacttaaatctttcctgggGTTGTTGTGCAATTCTAATAGAATAACTGACCTTCAGCACCTCATGCAAAG--AAGATGCTCAATAGGTGCCTAttaccctccctttttactcacaatttccttgtctatgaacaggagacaa s panTro1.chr1 116686115 558 + 229575298 CAAACCCT-------------------------TGCCCTTGCCTGCACAGGTGTCTGTTCTAGCCGAGGCATGGGCTGGGTGAGGGAAGGAACACAGGAGCCTACTGCCTGGGCTCCACCCTCCACCCAGCTTCTAACCTGGCAGGAGACAAGGAC-AA--ATGGAGGAAAAC-CATAAGAGCTGCATGTA---CTTAACTCCTCCCGCATGTCAGCGGAAGAGCCTGATGAAGGCGAGAGTGTTTGCAGAAAGC---------------------CCCACTGACTAATGCTCCCCAAATTAATGCATCCTGATGATCCGCTTTGA--GACAGACTCAGCCTCCAT-AGAGAAAGGAGCTCAAATTCAGGGCCCATACAACTGGACAGGGCCTGGGTGCAGGCAACATTGtgggagacaaccgg-ggttcaaatcctggctccaccattcactaggtacatgaccttaagctagtcacttaaatctttcctgggGTTGTTGTGCAATTCTAATAGAATAACTGACCTTCAGCACCTCATGCAAAG--AAGATGCTCAATAGGTGCCTATTACCCTCcctctttactcacaatttccttgtctatgaacaggagacaa s mm5.chr3 59198626 407 - 160575607 -----------------------------------------------AAAGTGTCTG-------CAATGCAAAG--TGGGTG-GGTCAGAAAGACAGGA----------------------------------------------GAAACAAAAACAAA--ACAAAAGAAAAC----AAAAACTCTCTGTAAGGCTTAA-----TCAACACGCTGG---------CTGATGAAG------GTGTCTGAAGGAACC---------------------TCCACTGCAGACTGGTCCCCAAATCAGCACCTTCTGG------GCC-----------ACTCAGCTTCCACAAGAAATAGAGATTCAAACTCA--GCCCACAT-----GATAGGATCTGAG-GCAGGCAA-------------AGACTG-GCCCCA-----TGTATCCTCCAAAGACCAGCCTCGTGACCTAAGGCTA--CCCTTTAATTCTTCCAGGGAATGTG----AATTCTAATCAAATAGCTGATCTT-----GCCCATGGAGGC--CAAAGACACAACAAATGCA-ACTGTTTGTCCTTTCTCCTCTGAGTTCCTTTATCTA--AACAAGAGACAG s rn3.chr2 61750411 480 - 258222147 AAAACTCTCTGTAAGGTT-----TAATCAA---CACCACTGGTCATGTGGGTGCCCTTTCTATAC------TGGGCTGAGAAATCAGAGGGGCACAGGACCCAA--GGCTGGGCTCCTCAGTTCCATCAGCTTCCAATGTAGCCAGCCCCTAGGAC-GG--ACGGA-----------AAG--------------TCCAAGTTACTCCTCAAGCCAGTAGAAAACCCTGAGGAG-------CTGTCTGAAGGAAGT---------------------CC--CTGCAGCCAGATCCTCAAATTAGCACCTTCTGG------ACC-----------ACTCAGCTTATACAAGAGAAAGGAATTCA--------GCCCATAT-----GATAGGATCCGAG-GCAAGAAA-------------AGACTG-ACCCCA-----TGCTTCCTCCAAAGACCAGCCTCATGACCTAAGGCTA--TCCTTTAATTCTCCCAGGGAATGTGA---AATTCTAATCAAATGGCGGATCTT-----GCCTATGGGGCCCAAAGAAGCTCAGCAAATGCC-ACTGTTTGTCCTTTCTCTGATGAGTTCCTTTATCTA--AACAAGGAACCA s canFam1.chr17 56842850 561 + 66886099 -AAAAACTTTGCAAAGTCACCTCTCATCCAACCCACCCTTCACAGTGTGGGTGCCTGTGATCTCCTGTTCAGGGGCTGGATGGCGGCAGGGCAGCAGGG-TCTTCAGCCTGGGCTCCACCTTCCA-CCAGCTTCCAACCAAGCAGGAGAGGGGGAC-AGCCACCGAGGAAACCATACAAG---TGCATATA---CTTATCCCCTCCCACACATTAGGAAAAGAGCCCAACGAAG----GAGTGGTTGTGGAGCGTCATGCTCCCCACCCACCTTTCCCCACAACTGGAGGATTTCCAAACTAGTG--GCCTTACCATCTGCCATGAGTGAGGGACCCTGCCTCCGCAGGGGAAGGGAGCTCAAA------GC----------------------AGTGCAGGAGA------GAAAGACACACAACggttcaagaccaggctctaccatttaccagctacacaactctgggtgcgccactt-aatctctctTGGGCTTGTGA---AATTCTCATAAAACCATCGACCCTAAGCACCTGCCACAAGG--GAGATACTCAGTAAGTGCCTCTCATGTTCCCTCTTGCATTCAACAttccttatctgccaacaggggaaaa a score=9767.0 s hg17.chr13_random 118620 59 + 186858 tgatatcacttccaca---taattgtatgaggattacaggagatgaggttaagtaaagAAaa s panTro1.chr1 116686673 59 + 229575298 tgatatcacttccaca---taattgtatgaggattacaggagatgaggttaagtaaagAAaa s rn3.chr2 61750891 54 - 258222147 GGACTCCTCCTGCACACGGTAACTGCC--AGGATTATAAGA---AGGGTT---TAAAGGTTG s canFam1.chr17 56843411 60 + 66886099 tggtcccccctccactctgttgttgca--aggattataggagaggacattaggtaaagAGAC a score=11723.0 s hg17.chr13_random 118679 132 + 186858 gggctttctttaaaacaattggcctg--tgcatttcacaaatgtccatgtctacagacacacacatacacacacacacacacacacacacacacatgcaaacacacaggttagggaattgttctagattaaagg s panTro1.chr1 116686732 128 + 229575298 gggctttctttaaaacaattggcctg--tgcatttcacaaatgtccatgtctacagacacacacatacacacacacacacacacacacacaca----caaacacacaggttagggaattgttctagattaaagg s rn3.chr2 61750945 72 - 258222147 GAG----------------TGGCCCACTCGCGTTTT---AATGTCAATGT-----GGTA-----------------------------ACACA--------CACAGAGGCT-GGGGACTGTTCTAGATTAAGGG a score=32285.0 s hg17.chr13_random 118811 242 + 186858 agtctaaa-gagacaggataac-aaatgtgatgtgtgatccctggttggatcctaatctgaa----------------agggaaaa---------ataaagggcatgat----------------tgggacaactggggaaatGTAGGTGATAG------------------------------------------------GGGTAGgttcttag---------------------------gagttac---atgctgaagtacttagg--gggaagtgtccc--------------------aatgtccacagctttccctccaatggctcaaaaacaacaacaaacatacacacagaggaagaaaacaaatgccgtcagaca--- s panTro1.chr1 116686860 290 + 229575298 agtctaaa-gagacaggataac-aaatgtgatgtgtgatccctggttggatcctaatctgaa----------------agggaaaa---------ttaaagggcatgat----------------tgggacaactggggaaatGTAGGTGATAGGACTACACTAACGTAAAACCCCAAGGGTGTGGTAATGGTGCAGTGGGTGGGTAGGTTCTTAG---------------------------GAGTTAC---ATGCTTAAGTACTTAGG--GGGAAGTGTCCC--------------------AATGTCCACAGCTTTCCCTCCAATGGCTCAAAAACAACAACAAACATACACACAGAGGAAGAAAACAAATGCCGTCAGACA--- s rn3.chr2 61751017 306 - 258222147 GGTGTAAA-GGGAAGGCACAACTCAAAGTGCTGGGTGATCTCTAAGTGAAGTCTCCTTGGAGCTGTTAGTGCATGAGTGGGGGAGG---------GGGAGTGGCACGCTGGAGAACAAACACTGCTGGGACAAATGGGGAATTGTGGGTAATGAGACCATACCAA-------------------------------------TACTGAGCTCTTGA---------------------------GTGTGACA--ATGGTGTTGTGGTTGGGTAGGACAATGTCCTGCTCTTAGGGGTCATTTATGAATATCCTCCACCTACTAAGGAATG---CAAAAAAGGAAAGGAAAATATCCAAGCAGGGAGAAAACACAGGCAGCAAAGCA--- s canFam1.chr17 56843471 294 + 66886099 agcctaaataagacatgacaactaaaagtggt-tttaatccctgattggatcctggtgtgga----------------aggaaaaaaaataaactataaaggacattgt----------------tgggacaatgggggaaatgctggtaacac-cctataatcc-------------------------------------tgttgaattcctggggcctgacagcagtgttgtggacaggagagtgtccttgtcctagagtactgagg--aggaggaggccc--------------------gacccctgcaagctaccctcagatggttcagaaacaataacaatgac-caaacagagggagaaaacacatgcagtaagatggta a score=15281.0 s hg17.chr13_random 119053 124 + 186858 acaactggctatcaaggaaaggaaatacaagtgtccactgcatgattcttaaaacttcctattgatttgcaatgtctctaaatgaagaGCTGGGAAA-GGGGGAAGTGA---------------TGCTGAGGGCTCCATG s panTro1.chr1 116687150 124 + 229575298 ACAACTGGCTATCAAGGAAAGGAAATACAAGTGTCCACTGCATGATTCTTAAAACTTCCTATTGATTTGCAATGTCTCTAAATGAAGAGCTGGGAAA-GGGGGAAGTGA---------------TGCTAAGGGCTCCATG s canFam1.chr17 56843765 126 + 66886099 acCACTGACCAGCACTACCAGGGAATGGGA--------------AATCTTGCAGCTACCTTTGGATTTGAAATTTCTCAAGTTAAAAAGCTGGGAAATGAAGGCAGCAAACACACCGCCCCCCCAACCGAGGACTTGATG a score=4000.0 s hg17.chr13_random 119177 33 + 186858 CACACTTTTCTTT---TTCC----------CTCACGTCTG---CTCAGG s panTro1.chr1 116687274 33 + 229575298 CACACTTTTCTTT---TTCC----------CTCACGTCTG---CTCAGG s mm5.chr3 59199525 43 - 160575607 CACACCCTATGTC---TCCCAATACATAGGCATGCATCCT---CACAGG s canFam1.chr17 56843891 39 + 66886099 TGCACCTCTCCCTCCCTCCC----------CGCATGCCTGGCACCCAGG a score=0.0 s hg17.chr13_random 119210 2 + 186858 CA a score=-767.0 s hg17.chr13_random 119210 2 + 186858 C---------A s panTro1.chr1 116687307 2 + 229575298 C---------A s mm5.chr3 59199568 11 - 160575607 CCTACTGGAGA a score=-1434.0 s hg17.chr13_random 119212 22 + 186858 GCATGGGCACATA---------GCC----------------------------CACAGG s panTro1.chr1 116687309 22 + 229575298 GCATGGGCACATA---------GCC----------------------------CACAGG s mm5.chr3 59199579 50 - 160575607 GTGTAAGCACACA---------CCCATGTGCCTTACTATGCTGTGCAGACACACATGGG s rn3.chr2 61751775 15 - 258222147 ------GCACACA----------CA----------------------------CATGGG s canFam1.chr17 56843930 29 + 66886099 --GCAAGCACGCATACTCCACTCCC----------------------------TACCAC a score=-5444.0 s hg17.chr13_random 119234 8 + 186858 TC------------------------CTCAGC s panTro1.chr1 116687331 8 + 229575298 TC------------------------CTCAGC s mm5.chr3 59199629 30 - 160575607 CCCTGAGAGGCCCTGGAGCCTGAG--CTGAGC s rn3.chr2 61751790 31 - 258222147 CC-CGAGAGCCTCGAGGCCCTGGATTCTGAGC s canFam1.chr17 56843959 8 + 66886099 CC------------------------CGAGCC s galGal2.chr1 102133017 8 - 188239860 ------------------------TTCTCAGC a score=4011.0 s hg17.chr13_random 119242 2 + 186858 AC s panTro1.chr1 116687339 2 + 229575298 AC s mm5.chr3 59199659 2 - 160575607 AC s rn3.chr2 61751821 2 - 258222147 AC s canFam1.chr17 56843967 2 + 66886099 AC s galGal2.chr1 102133025 2 - 188239860 AC s danRer1.chrUn 245917091 2 - 367113659 AC a score=630769.0 s hg17.chr13_random 119244 425 + 186858 TCACCTGGCTGCAGCACCCTGATCACCAGCAGGTTGGAGGTCCTCTCCGCCAGTTGCGTCCAGGTGTTGTTGTAGTTCTTCCGCCACAGCTCTGCCACACACTGGTACTTGCCTGCTTCCGTGTCACTGGCTCGGCTGATGATTAGGCGGACGTTGTTGCTGGACTCAGCCTTCTCGGTGGCAGTTCGGGTTCGGAAGCTGGAGGACCTGTCCCCCCACTGGACCCCTCCGTCCCGGGTGAAGGTCACCAAGTCATGGAACTCCA---------------------CCGTGCCC---ACCGGCTGGAACCGCCATGTCACTGACACGGGGACCTGGGCAGGGTAGTGGGGTTTGATGATACACTGCAAGTCAAAGGAGTCGCTGTAGGTCACCCCCGGTGTCCGGGAGATGGCTGTGACTGCGAAGCCCATTTCT----------GGAGAGAGAGCAGA s panTro1.chr1 116687341 425 + 229575298 TCACCTGGCTGCAGCACCCTGATCACCAGCAGGTTGGAGGTCCTCTCTGCCAGTTGCATCCAGGTGTTGTTGCAGTTCTTCCGCCACAGCTCTGCCACACACTGGTACTTGCCTGCTTCCGTGTCACTGGCTCGGCTGATGCTTAGGCGGATGTTGTTGCTGGACTCAGCCTTCTCGGTGGCAGTTCGGGTTCGGAAGCTGGAGGACCTGTCCCCCCACTGGACCCCTCCATCCCGGGTGAAGGTCACCAAGTCATGGAACTCCA---------------------CCGTGCCC---ACCAGCTGGAAATGCCATGTCACTGACACGGGGACCTGGGCAGGGTAGTGGGGTTTGATGATACACTGCAAGTCAAAGGAGTCGCTGTAGATCACCCCCAGTGTCCGGGAGATGGCTGTGACTGCGAAGCCCATTTCT----------GGAGAGAGAGCAGA s mm5.chr3 59199661 425 - 160575607 CCACCTGGCTGCAGCACCCGAATCTCCAGCAGGTTGGACGTCCTCTCCGCCAGCCTTGTCCATGTATTGTTGTAATTCCTTCGCCACAGCTCTGCCACGCACTGGTACTTGCCTGCCTCTGTGTCACTGGCCCGGCTGATGCTCAGGCGGACATTGTTGCTGGACTCAGCCTTCTCAATGGCAGTCCGAGTTCGGAAAGTGGATGACTTGTCCCCCCACTGAACCCCTCCATCTCGTGTGAAGGTCACCAGGTCATGGAACTCCA---------------------CTGTGCCC---ACTGGCTGGAACCTCCATGTCACAGACACGGGGACTCTGGCCGGGTAGTGGGGTTTGATGATGCACTGCAAGTCAAAGGAGTCGCTGTAGGTGACCCCTGGTGTCCGGGAGATAGCTGTGACTGCAAAGCCCGTTTCT----------GTAGGGAGAGCAGA s rn3.chr2 61751823 425 - 258222147 CCACCTGGCTGCAGCACCCGAATCTCCAGCAGGTTGGAAGTCCTCTCCGCCAGCCTCGTCCAGGTATTGTTGTAATTCCTCCGCCACAGCTCTGCCACACACTGGTACTTGCCCGCCTCCGTGTCACTGGCCCGGCTGATGCTCAGGCGGACATTGTTGCTGGACTCAGCCTTCTCGATGGCAGTCCGAGTTCGGAAGGTGGAGGACTTGTCTCCCCACTGAACCCCTCCATCTCGTGTGAAGGTCACCAGGTCATGGAACTCAA---------------------CTGTGCCC---ACTGGCTGGAACCTCCATGTCACAGACACGGGGACTCTGGCTGGGTAGTGGGGTTTGATGATGCACTGCAAGTCAAAGGAGTCGCTGTAGGTGACCCCTGGTGTCCGGGAGATAGCTGTGACCGCAAAGCCCGTTTCT----------GTAGGGAGAGCAGA s canFam1.chr17 56843969 425 + 66886099 TGACCTGGCTGCAGCACCCTGATCTCCAGCAGGTTGGAGGTGCGCTCGGCCAGCCGCGTCCAGGTGTTGTTGTAGTTCCTCCGCCACAGCTCGGCTACACACTGGTACTTGCCCGCCTCCGTGTCACTGGCTCGGCTGATGCTCAGGCGCACATTGTTGCTGGACTCTGCCTTCTCGATGGCCGTGCGGGTTCGGAAGCTGGAGGACCTGTCCCCCCACTGGACCCCTCCATCCCGGGTGAAAGTCACCAGGTCATGGAACTCAA---------------------CAGTGCCC---ACTGGCTGGAACCGCCACGTCACGGACACAGGGACCCGAGCCGGGTAATGGGGTTTGATGATGCACTGCAGGTCAAACGAGTCACTGTAGGTCACACCTGGCGTGCGGGAGATGGCTGTGACGGCAAAGCCCATTTCT----------GGAGAGAGAGCAGA s galGal2.chr1 102133027 424 - 188239860 TTACCCGGCCGTAGGACCCTGATCTCCAGCAGGTTGGAGGTCCTGTCTGCCAGCCGAGTCCAGCTGCTGTTGTAGTTCTTCCTCCAGAGCTCGGCCACACACTGGTACTTGCCGGCCTCTGTGTCGCTTGCCCGGCTGATGCTGAGGCGCACATTGTTGCTAGACTCAGCCTTCTCAATGGCAGTACGTGTCCGGAACCCCAGGTACCTGTCACCCCACTGGACGCCACCATCGCGTGTGAAGGTGACCAGGTCATGAAACTCGC---------------------TGCTGCCT---GCTGGCTGGAAGCGCCACGTCACTGACACCGGCACCCAAGACGGGTAGTGTGGTTTGATGATGCACTGAAGGTCAAAGGACTCGTTGTAGGTTACCCCAGGGGTGCGGGAAATAGCTGTGACAGCAAAGCCAGCCTCT----------GCAAAAAGAG-AGA s fr1.chrUn 163510965 456 - 349519338 TTACCTGGCTGTATAACACTGATGCCCAGCAAGTTGGAGGTGCGATTGGCCACTCTGCTCCAGCTGTTGTCATAGTTCCTCCTCCATAAGACGGCGGTGCACTGGTACTTGCCAGCTTCGCGGCGTCCCGCTCGGGTCACCGACAAGCGAAAATTGGTGTTGGAGTGGGAGCGGTCGACTGTGGTGCGGGTACCCAGGCCCAGCAGCTGCTCCCCCCACTGTAGCGTTCCCTCACGTGTGAAAGTGACCAGGTCTTTGAACTCTCCCTGGTCCTCGCCGTCAGCGTCCATGCTC---GCCGGCATGAATCGCCAGGTGACTGAGGTGGGTACACGGGGGTTGTGGCGAGGTTTGACCAGGCACAGGAGGTCAAAGGAGTCACCAAAGGTAACTGACGGTGTGCGTGATGATGCTGACACCATGAAGGAAGATTCTGCATGTTGGGGGAGAAGAAACAGA s danRer1.chrUn 245917093 428 - 367113659 TTACCAGGCTGAAGTACACTGATGCCCAGAGGGTTGGATGTGCGGTTAGCCACTGTGCTCCAGGTGCCATCGTAATTCCTCCGAAAAAGCAGGGCAGCGCATTGGTACGTCCCGGCCTCTTTGCGTCCAGCCCGGGTAATGCTAAGCCGGAAGTTGGTGTTAGTGGGCGTACGATCCACTGTAGTACGTGTGCCCAGACCCAGCAGCTGATCGCCCCACTGTAGAGTACCATCCCGTGTGAAAGTCACCAAATCTTTAAACTCTC---------------------CATCGCCCTCTGCTGGCTGAAATCGCCATGTGACTGCAGCGGGAACGTTGGGATTGTGTCGCGGCTTCACAATACACTGTAGGTCAAACGAGTCACCAAATGTAACACTGGGCGTGCGGGAGGAGGCTGACACGAAGAAGAAAGATTCT----------GGAAGAAGAACAAA a score=1620.0 s hg17.chr13_random 119669 12 + 186858 GAGATT-CAACCA s panTro1.chr1 116687766 12 + 229575298 GAGATT-CAACCA s mm5.chr3 59200086 11 - 160575607 GACATG--AACCA s rn3.chr2 61752248 11 - 258222147 GACATG--AACCA s canFam1.chr17 56844394 13 + 66886099 GAGACTGCAGCTA s galGal2.chr1 102133451 11 - 188239860 GAAAAG--GGCCT s fr1.chrUn 163511421 12 - 349519338 GAGGAA-CAAACA a score=6743.0 s hg17.chr13_random 119681 17 + 186858 GAGGAG--GCATGTGGCTT s panTro1.chr1 116687778 17 + 229575298 GAGGAG--GCATGTGGCTT s mm5.chr3 59200097 17 - 160575607 GGGACA--GCATCTGGCGT s rn3.chr2 61752259 17 - 258222147 GAAACA--GCATCTGGCTT s canFam1.chr17 56844407 19 + 66886099 GGGGGGACACACCTGGCTT s galGal2.chr1 102133462 15 - 188239860 TGAA----GCACAAGGCTT a score=213283.0 s hg17.chr13_random 119698 1024 + 186858 TCTCAGGGCAGTATGACATCAGCAATGGGGC-AGCTGGCAAAGCAAGCAGTGTGGAGCAGAGGCTCTCGGGGCCCCTTTTGA-GCTCTC-----------AGGCTAGTGTTGCTTTTAGTATCCTGCTGAGGC-CCAGTCCAAGAGTTTCCAAGACTCCA---AAGAAAGGCCCACCACAATTCCCCCTGAGCAGCGCTAGCCTAACCCTTCCCA-------ATGAGATCCT--CGTGCATTTGC------TCCTCCCCTGGAATTAGACATCACAATCCTCT--CAGGGACTGATTGCATGTAGGCAGGGTTGCTCCTAGAAATCTT-GAGATTCCATGAGAAAACA----GGAAAAGAAAACCCC--AAAGCCAATTTCCTCCATTGCGCAGGAGGAAAACACAACCACACAGCCCCAACACC-TCTTTTCCTGGTCCCTTAGTGCACTG-GTGCTGAGAAGGGA---AGCAGATGGAGTCGG-------------------------------------CCTCCAGTCCCTTTCTCACGTC-CCTCATGAAATCCAAG-------------------------AACAG---------------AGCAGG----------TGGGGACCTCCA-----------------------GTGGGG---TGGGACAATTGTCCTAAATGCAGGGTTCTGCAGTCTCAGCGG-CTGTGGGTCTCTCAATATTCCTTATTGAATGGGCAGCACTGCTAAGCTCTAATACTGACTCCTCAATATGAGTACCTCAGAGTTCCTTCAGCCTGGAAATACTGCTTAATATTCATACATTGATCACAATCATAAAGCTaacagtagccagtatttattgagcactatctaggtgcaagcatgg---tgccaactgctttgctctcatcatgctccactgaatccccaaaacaaccttgtag----aaca-ggcaggcttgtcatctctt-cctgcagacgtagaaactg-atgcagagagaggttagataaattgcccaatatcaagcatttggtaagtcaatgacagagttagtctccaa------ccacatgtaactgattccaggggccTTTTT---AGGTTGCTTTACCCATGG----AAagcataacacaatggttaaaggtctagactctggagccagcagccaagccttt-------gatacgtcccagctgagtgac s panTro1.chr1 116687795 1023 + 229575298 TCTCAGGGCAGTATGACATCAGCAATGGGGCAAGCTGGCAAAGCAAGCAGTGTGGAGCAGAGGCTCTCGGGGCCCCTTTTGA-GCTCTC-----------AGGCTAGTGTTGCTTTTAATATCCTGCTGAGGC-CCAGTCCAAGAGTTTCCAAGACTCCA---AAGAAAGGCCCACCACAATTCCCCCTGAGCAGCACTAGCCTAACCCTTCCCA-------ATGAGATCCT--CGTGCATTTGC------TCCTCCCCTGGAATTAGACATCACAATCCTCT--CAGGGACTGATTGCATGTAGGCAGGGTTGCTCCTAGAAATCTT-GAGATTCCATGAGAAAACA----GGAAAAGAAAACCCC--AAAGCCAATTTCCTCCATTGCACAGGAGGAAAACACAACCACACGGCCCCAACACC-TCTTTTCCTGGTCCCTTAGTGCACTG-GTGCTGAGAAGGGA---AGCAGATGGAGTCGG-------------------------------------CCTCCAGTCCCTTTCTCACGTC-CTTCATGAAATCCAAG-------------------------AACAG---------------AGCAGG----------TGGGGACCTCCA-----------------------GTGGGG---TGGGACAATTGTCCTAAATGCAGGGTTCTGCAGTCTCAGTGG-CTGTGGGTCTCTCAATATTCCTT----AATGGGCAGCACTGCTAAGCTCTAATACTGACTCCTCAATATGAGTACCTCAGAGTTCCTTCAGCCTGGAAATACTGTTTAATATTCATACATTGATCACAATCATAAAGCtaacagtagccagtatttattgagcactatctaggtgcaagcatgg---tgccaactgctttgctctcatcatgctccactgaatccccaaaacaaccctgtag----aacagggcaggcttgtcatctctt-cctgcagatgtagaaactgaatgcagagagaggttagataaattgcccaatatcaagcatttggtaagtcaatgacagagttagtctccaa------ccacatgtaactgattccaggggccTTTTT---AGGTTGCTTTACCCATGG----AAagcataacacagtggttaaaagtctagactctggagccagcagccaagccttt-------gatacttcacagctgagtgac s mm5.chr3 59200114 951 - 160575607 TTCTGGGACAGTGTGCTATCAAATATGGGCC-CACTGGCAAAGCCAGCAGT-CAGAGCAGAGGCT----GGGGAGTTCTTAA-GCCTTCTTGTCACAAAGAAGCTA---TTACTTTGGGT-TTGTGTTGAGGC-CCAACACAACAGTTCCTAAGACTTC-------ACGGGTCCA--------GGCTCTGAATAACCCAGGTCCGCTCCTTCCCA-TGAGACCTGAGATCCT-GTGTGGGTTCACAGTACATCCTGCTCCAGGGTAAGACACCAGAA-CCTCT-------------------------------CTCCTAGCAATCCC-AGAATTCTGTGCAAAAACAAGAGGGAAAAAAAGGTTCCAAAAAGCCAAGTTCCTTCACTGCACG---------------CACCCAACACCCAGATG-CCTGTCCCTGGTCTTCTAGCGCATGGCATCCTGAAACAG------GCAGATGGGGAC-G-------------------------------------CTGCCAGCCCCTCCTCAAATTC-CCCAACAAAATCCGGGTTTAGATAGGTTTTAAGGGACATACAACAGGAAAGCCTAGTCTTTAGTGGA----------TGGATACC----------------------------TGGGG---TGAGGCATTACCCTTAAACTCAGAGCCCTGAAGTCTCAGTGA-------------GAATAGTTCTTACTGACTGGGGAGC------GAGCGTT----CTGACCTCTGA----------TTCACAGCCCCTTCAGTGTGG--------------ATGAGCACACTGGCTATGATCATAAAAGTAATAGTGGCTGGGATGTG-CGAATGCTACATG---CCAAACCTAG---TGTTGGAGGCTCTGCTTTCATCCCCTCTTACTAAGTC-----AACA--CTTGTAGGTCAAACA-GGCAGGCTTGTTATCCCTT--TTGCA--------------GTGTACAGAGAAGGCAAAAAAATTGCCTGATGTTAAGTAT------AGCAAATGGTAGAGTCAGGCTACAGACCTATCCCTGTGCACCTCACTCTAGGCCCCGCCTG---GGGCTGCTTTGCCCAGGG----GAACCATCAGTC--TGGTTAAAGGCATCAACTC-----CCAGCCGTCA--CCTTCGTCTCGAGACACCTACTAGTTCTATGAC s rn3.chr2 61752276 968 - 258222147 TTCTGGGGCAGTATGCTA-CAAATTCGGGCC-TAGTGTCAAAGCTAGCAGT-CAGAGCAGAGGCT----GGCAGGTTCCTAA-GCCTTCTTGTCACAGATAAGCTT---TGACTTTGGGTACTGTGTTGGGGC-CCAACTCAACAGTTCTTAAGACTTCACACAAAGTGGGTCCA--GGCTGTTCCTCTGAATAGCCCAGCCCCACTCCTTCCCAGTGAGACCTGAGATCCTCATGTGGGTTTACAGTACATTCTTCTCCAGGGCAAGACACCAGAACCCTCTCTCAGTGACTCATACCGCACAGTCAGGATCATTACTAGCAATCCC-AGAATTCTGTGCAAAAACAAGA-GAAAAAAAAAGTTCC--AAAACCAATTTCCTTCACTGCATG---------------TACCCAACACCCCGATA-CCTGTCCCTGGTCTTCTTGTGCATGGCATCCTGAAATAG------GCAAGTGGGGAACA-------------------------------------CTGCTCGCCCCTCCTCTTCTTC-CCCAACAAAATCTAGGTTCAGATAGGT-----------TTCAAGGGACATAC---------AACAGGAAAGCCTAGTTGGACACCTGAG-----------------------GTGGGG---TGAGGTGTTACCCCTAAACCCAGGGCCCTGAAGTCTCAACGA-------------GAATGTTCCTTATAGGCTGGGAAGC--------------ATCCTGACCTCTGA----------GTCACAGCTCCTTCAGTGTGG--------------ACGA-------GAGTATGA--ATAAAGGTAACAGTGGCCAGTCTGTTCGGAATGCTACATG---CCAAACCTAGGGCTGTTGGAGGCTCTGTTTTCATCCC-TCACACTAAATC-----AACA--TGTGTAG----GTCA-GGCAGGCTTGCTATCCCTT--CTGCA--------------GGGTGCAGAGAAGACAAACAAACTGTCTGATAT----------------AAGTGATAGAGTCAGGCTACAG-AATAGCTACGTGCACCTCACTCTAGGCCCTGCCTG---GGGCTGCTTTGCCCAGGGGAACGAACCATCAGTC--TGGTTAAAGGCATTAACTCTGCTGCTATCA------CCTTC---TCCAGACACCTCCTAGCTCTGTGAC s canFam1.chr17 56844426 967 + 66886099 TCTCAGGGCAGCATGCCA-CAGTGATGGGGC-TGTTGGCAAAGCCGGCGGAGCAGAGCCAAAGCTCT--GGGTCTCTCTTGATGCCC-------------AGGCCAGTATGACTTTAGCTCTCGCATTAAAGCACAAGCCCAGAAGATCACAAGATGCCATA-TACAGAGGCCAGAGGCAATTCTCTTTGAGTAGCACTAAGTGAATCCTTCCTG-------ATGAAACCTTCACGTCGATCTGC--------CTCC------------CATAAGTCCCCTCC--CAGGGACTGAGGTCATGTAGGGAGAGCCATTCCCAGAAATCATGGGGATCCCATGCTAAAACA----AGAGAAAAGATCCCC--CAAGCCAACGTCATTCATTGCTGGCAAGATGGACACCACCCCCCAGCCCTGACACCTCCTCTGTCTGGTCCGC-AGTGCATTG-GGGCTGGAGAAGGGGGTGGCAGATGGAGGACGTGCCACGCATTCCCTGGGGCGCACAGCATAGGCTTGCTCACCAGTCCCTTTTCCGTTTTACCTTGTGACATCCAGG-----------------------GAAGATG---------------GGCAGG----------GAGGGACCCACATCACATGGCCTGACCTTGAGCAGGTGGGGACCTGGGGC----------AAGGTGAGTTTCTGCAGTCACAGTAGGCTGTGCAGCTCGCAATACTCCTTACTGAC-GGGCAGC-AGACTAATCCCTGATACCAACTCCTCAGCGGGGGTT-ACCTGAGTTCCTTCACCTTGA-AATACTACTTAATATTAATACATTGGTTATGATCATAAAACTGGGAATAGTCAGTATTTACTGAGCACTGTGCA---------TCAG---T-----------------------------------------AACG-CCTTCTGG----CAta-----------ccatccatttcttatagacgaggaag----agaaacagagaagttaaataagttgcccacgaccaagctgct----agtaaatagcagagtcg--------------------------------agGGTCTGTCTTATCATGTGGCTTTACACAGGG----AAag----------tggttaaaggcacagactcttgagccacatgcctg-actgt-------aaccctttctagctgtatgac a score=0.0 s hg17.chr13_random 120722 9 + 186858 attaaagtt a score=774.0 s hg17.chr13_random 120722 7 + 186858 attaaag--- s panTro1.chr1 116688818 7 + 229575298 attaaag--- s mm5.chr3 59201065 7 - 160575607 ACTAAAC--- s rn3.chr2 61753455 10 - 258222147 ATTAAGCGAA a score=546.0 s hg17.chr13_random 120729 2 + 186858 tt s panTro1.chr1 116688825 2 + 229575298 tt s mm5.chr3 59201277 2 - 160575607 TT a score=265089.0 s hg17.chr13_random 120731 1137 + 186858 a---------cttaacttctctctgcctctgttttccaatctgtaaaatgagtctctgtgaagattaaataaatcagtgtttataa-atattacaaatagtacctggcacatGAGATATACtatattttgttaaatattttgtt-----aaaaaatgaaatagaaattttaaaaaaGTACTTTAAATTCTGTAATGTGAAAGACTGGCCACAGGATGAATCTTTTGGCTTTCTATGGTGAGGTTAAGTTGGCAAATAGGTAGGTACAATTTGCTGAAAACTCTGGACCTTTGATTTGGATTTCATGAGCTATCTCTATATACCTTTTAAAAAAGT---TTATGACACGGAGGTCCATCCTTAAACATGAAGCACCTCTGACTGTCAC-TGTG-----CACCTGTGTGTAGTAGGTG-TTGCATGAGGGTGGTGTAGGACA-GAACCTCA-GGGACAGGACCCACACCAGGTGCTCCTGGCCTC-ACACCTGAAGGGGAGAGAGCTTCCCCAA---GCAAATGACTTTGTCTAGTCCTGACACAGGCACATGCCACAGTC--ACAGAGCAC----CCAAGCTGCTCTAACTGAACAGCC---ATAATGGCCC------------ATTGTACATT-----------------------------TGGGACCCAC-----ATCAAATTATACTGATATGAAAATTCATGTGTG-TCATTGTTAACTTTAGACTGAAAAGACAACCTTAATTAGTCTAGAGTGCCCTCCCATTCTTCCTTGTTCAGTCCTTTGGGCCA-CCTGATTATGGCTGTAGCCAGAGGTATCTCAGCGGTGGAGATCAGGTGAACAGTGCTGGCCTCCAG-ATCCCAGGGCAGAGCTCCTCAGTGC-CCCTGGCTGTGAGAACCACCAGACA--TATGGTGAGTAAGAAAAAACTCAGG--GGATAACCTGATACCAT-AAATTACTTCTAGAGAAACAATCCTCACTAACTCTAATCACTCATTGGACATTCCTAACCTTCCAGGATGGTT-AAAAAAAAAAAACACCAGTACTGGACATCCAAAATTTGTCCCCCAAGTTCCAT--CTGACTGGGTCCACACAGGTGCTGAGTATGGACACAGGAACTGAGC--TGATCAGGAAACGCAATCACTGGAGGAAGTTTCTAAG-ACAGAAATCTGAGCCATATAATTACTGCAAAAAGCAGGTCAATCTTTAGGATTAAGCTTT-AGA s panTro1.chr1 116688827 1143 + 229575298 a---------cttaacttctctctgcctctgttttccaatctgtaaaatgagtctctgtgaagattaaataaatcagtgtttataa-atattataaatagtacctggcacatGAGATATACtatattttgttaaatattttgtt-----aaaaaatgaaatagaaatttttaaaaaGTACTTTAAACTCTGTAATGGGAAAGACTGGCCACAGGATGAATCTTTTGGCTTTCTATGGTGAGGTTAAGTTGGCAAATAGGTAGGTACAATTTGCTGAAAACTCTGGACCTTTGATTTGGATTTCATGAGCTATCTCTATATACCCTTTAAAAAAGT---TTATGACACGGAGGCCCATCCTTAAACATGAAGCACCTCTGACAGTCAC-TGTG-----CACCTGTGTGTAGTAGGTG-TTGCATGAGGGTGGTGTAGGACA-GAACCTCAGGGGACAGGACCCACACCAGGTGCTCCTGGCCTC-ACACCTGAAGGGGAGAGAGCTTCCCCAA---GCAAATGACTTTGTCTAGTCCTGACACAGGCACATGCCACAGTC--ACAGAGCAC----CCAAGCTGCTCTAACTGAACAGCC---ATAATGGCCC------------ATTGTACATT-----------------------------TGGGACCCGC-----ATCTAATTATACTGATATGAAAATTCATGTGTG-TCATTGTTAACTTTAGACTGAAAAGACAACCTTAATTAGTCTAGAGTGCCCTCCCATTCTTCCTTGTTCAGTCCTTTGGGCCA-CCTGATTATGGCTGTAGCCAGAAGTATCTCAGTGGTGAAGATCAGGTGAACAGTGCTGGCCTCCAG-ATCCCAGGGCAGAGCCCCTCAGTGC-CCCTGGCTGTGAGAACCACCAGACA--TATGGTGAGTAAGAAAAAACTCAGG--GGATAACCTGATACCAT-AAATTACTTCTAGAGAAACAATCCTCACTAACTCTAATCACTCATTGGACATTCCTAACCTTCCAGGATGGTTAAAAAAAAAAAAACACCAGTACTGGACATCCAAAATTTGTCCCCCAAGTTCCATTCCTGACTGGGTCCACACAGGTGCTGAGTATGGACACAGGAACTGAGCGGTGATCAGGAAACGCAATCACTGGAGGAAGTTTCTAAG-ACAGAAATCTGAGCCATATAATTACTGCAAAAAGCAGGTCAATCTTTAGGATTAAGCTTT-AGA s mm5.chr3 59201279 922 - 160575607 AAACAAATGCTCTAAGTCCACTCTGCCTATGTTTTCCTTTCTGTAAA--GAGTTCTTGTGAAGGTTAAATGAGT------------------------------------GTGTGGTGCATTATATGTAGT-----------CT-----AGAAAAT-------ACAGTTTAAGAAA---------------------CAAAGA--GGACAAAACATTAATCTTCTGTATTTCCCAGGGGAATT---ATTAGAGAATAAGTTGGCACATTTTGCTGAACTCTCTGGATCTTCAA-------------------------------TTCAAAAAAA--------------------------TGAAGAGAGAGTAGCCCTG--TGTGGC-CGTGATGGTCAGTAGTGTGTGGTACATG-TGCCAAAAGTTTCGTACAGATCAGGGACACCA-GGGACAGGCCCTGCACTGGGTATCCCTGACTTT-ACAT---AAGTGGACACAG----ACCAGACTGCACATGGCCAAGGT--GTCCCTCCACAGTCACAGTCTGTGGCCTATTAGTTCAT----CCACATAGCTGTCACCGCTGAG-------------------------------------------------------------------GGGATCCAT-----GCCTAATAGAAGCAATCCAGAAACTCGTGAGTGTTCATTGCTTACTGTAGAC--AATAGAT--------TAGGACTAGTGAGACAACC--TTGCTCCTAGTT---------------------------------CCAGAGGCAAT---GGAGAGGGGGTCAGGTGAGCAGAGCTAACCTCAGG-GTCCCAGAGGAGTGCTACTCAGCACGTCCTGGCTGTGGAAGCTGCCAGACACGCATGGAATTTAAGAATACGCCAAGGACAGATAATCTGAAACCGTAAAATTACTTCCAGGGAAACAACCCCGAATCACCCT------TCCCTGGGTACCCCTAACCTCCCAGGATGGGG-AAAAACCATA--------TGCAGCGTATCTCAGAGCCATCTCCCAAGTTCCC---CTGCCTGGGTCCACAGCAGCGCCAAGCACAGGCACAGGGACTA-----TGTTCAA----------CACTGGAGGGAGTTTCTAGGAACAGGAATCTGAGCTGCCTAATGACTACACAAGGCAAGCCCTTCTTTGGTACTAAGCTTTCAGG s rn3.chr2 61753465 953 - 258222147 -------TGCTCTAAGTCCACCCTGCCTATGTTTTCCTTTCTGTACA--GGGTTCTTGTGAAGGTTAACTGAGTGTGTGGT------ACATCATATATAGTC--------------TACAGAATATGTAGT-------TTATTT-----AAGAAACAAAGGGGACA-----AAATA-----TTAAACTCTGCAGGA-AAAACACAAGGCACAG----AATCTTCTGGATCTCCCTGGGGAATC---ATTAGAGAATAAGTTGGCGAATTTTGCTGAACTCTCTGTATCTTCAA-------------------------------CTTAAATAAA-------GGACA-------------------AGAGAGCAGCACTGAGTGGCTG-TGAG--GGTCAGCAGTGTGTAGCACACA-TGACACGAGACTGGTACAGACCA----------GGG---GGCCCTGCACTGGGTATTCCTGACTTT-ACAC-------------------ACGAA---GC-CATGG---TGCCCAGGCCTGACA-------GTGCAGAAACC--AGAGTGCACATAGCCAAGGTGTCC---CTCCACAGTC---ATGGTGGTTT------------GTGGTCTATTAGTTCATCCACACACCTGTCATCGCTGAGGGGGATCCAC-----ACCCAACAGAAGCAATCCAGAAATTTGTGT----TTACTGCT-----TAGAC--AAAAGAC--------TAGGACTAGTGAGACAACC--TTGGTCCTAGTT---------------------------------CCAGAGGCAAT----GACAGGGTGTCAGGTGAGCAGAGCTGGCCTCAGG-ATCCCAGAGGAGTACTACTCAGCACGTCCTGGCTGTGGGAGCTGGCAGACATGGAGTGAATTTACGAATACTCCAAGGACAGATAACGTGAAACCGTAAAATTACTTCCAGGGAAACAACCCTGAATCACCCT------TCCCTGGATACCCCTAATCTCCCAGGATGGGG-GAAAACCATA--------TGCAGCAGATCCCAGAGCCATCCCACAAGTTCCT---CTGCCCGGGTCCACAGCAGTGCCAAGCACAGGCACAGGGACTA-----TGATAA-----------CACTGGAGGGAGTGTCTAGAAACAGGAATCCGAGCT-CCTAATGACTACGGAAGGCAAGCCCTTCTTCGGTATGAAGCTTTTAGG s canFam1.chr17 56845393 1142 + 66886099 ---------acttcacctctctctgccttgatttccccctctataaaatgggtccttgtgaggattaaatgagttaatatttgcaacctgcttggaatggag--tggtacctgggacacgctATATTTTGTTAAACATGTGGTTGGCTAAAGAAACAAAATACACA-TAAAGGAAAGTAGTTTAAATTCTGTGGTT-AAAAGACTAGGCACAGAATGAATCCTTTGGCTTTATATGGGGAGGTTATGTCAGCAAATA----GGCATGATTTGCTGAAAACTCTAGATCTTCAATTTGGATTTCATAAACTATCTTTATGTATCCTTAAAAAAAACATGTTAAGACCCAGAGATCCATCCTTAAACATTCAGTGGCTGTGATGATCACTTGTG-----CCCCTGTGTGCAGAAGATGCTGGCATGAGGGTGGGAGAACACA-GGACCTCA-GGGATAGGACACACACCAGGGGTTCCTAGCCTCAACACCTGAAGGAGGGAGAGCTTCTCCAA---GCAAATGACTCTGTCCAGGCTTG-----------------------ACAGGGCAC----CCAACTTACACTAACTGAATGGTCATTATAACAGCCCACCTGAAGCTGAATGATGTACC------------TACACGTTATCATGCCGGGGCACCTGCTAAGAGTAAAACTGCACCAATATGAAAATTCACCAGTG-TCACTATT-----TAGACC-AAAAGGCAACC----TGAACCCACAGCACCCTCCACTCTCCCCTGCCCCACCCCCTTGGGCCATCCTGATCCTGGCTTTGGCCACAGGAGCCCCAAGGGTAGAGGATAGGGAAGCAGAACCAAGCCCTGGCATCCCAGGTCTAAGGCCCTGGTGAGACCCTGACTGTG-GAGCCA-CAGACA--TATGGTAAGAATGAAAAACCTCAGG--GGATCAGCAGCTACTGTCAGATTACCTCTTGAGAAGCACTCCTGGCTCATGCTAACCACTCCTTGGACGTTCCTAACCTCACAGGTGGGGA-AAATGATGGT--------GACTCGTTACCCAAACATTTCCTCACAGGTGCCAT--TCCCACAGGTCCACACTGGTGCTGAGTACAGACCCAGGGATTGAGC--CAATCAGCAATCTCAACCACCGGACTAAGTTTCTACAGATAGAAATCTGAGCAATATGACTGCTGCACGAAGCAGGTCAAT-TTGAGGATTAAGCTTTCAGA a score=-1302.0 s hg17.chr13_random 121868 57 + 186858 AAACAAATGTAATTCTAATCTCAGAGGGG----------------------------------------------------------------------TAAGAAAATGG------------------AGGACTCTG----------------------------------------------------------TTAAGGAC s panTro1.chr1 116689970 57 + 229575298 AAATAAATGTAATTCTAATCTCAGAGGGG----------------------------------------------------------------------TAAGAAAATGG------------------AGGACTCTG----------------------------------------------------------TTAAGGAC s mm5.chr3 59202201 203 - 160575607 AAGCAGATATAATCGCAATGATGTGGGGGAGGATACAGAGGCTGCATCTGGATTTACATGACACCATGTCCGTCCCAAGTCCTCAACAGCAAGCCAGTCTAACCAAATGGGTGCCATAACGGAACACCAGGGGTCCGGAGCTGTTTTCTTACCGTTTGCATGCTTGTTCTTCTTTGTTTTTACTGCATGCCTTGCTTGGGGGC s rn3.chr2 61754793 53 - 258222147 AAGCAAATGCAATTCCAATCTCAGAAGGG----------------------------------------------------------------------TGA--ACATGGATG---------------AGGGTCTTG---------------------------------------------------------------GGC s canFam1.chr17 56846535 54 + 66886099 AAAAGAGTGTAATTCTAACCTTGGGTGGG-------------------------------------------------------------------------GAGAATAG------------------AGCACTCTG----------------------------------------------------------TTGAGGGC a score=0.0 s hg17.chr13_random 121925 2 + 186858 AA a score=-471.0 s hg17.chr13_random 121925 2 + 186858 AA s panTro1.chr1 116690027 2 + 229575298 AA s mm5.chr3 59202404 2 - 160575607 AA s rn3.chr2 61754846 1 - 258222147 A- a score=209599.0 s hg17.chr13_random 121927 836 + 186858 AAACCACTCGGGGCTGCCATCTTTACT--------------------------GGAAGTATCCAAAAGCACCACCATC-------------------------------CCGACCTGCA-------------------AGGAAGGT-GGTGACA----CAGTCCCA------GGGAGTGGGACATAAAGTT------GCTGAGGACAACCAATGTC-------TCCTGATAAACAGGAAGACCTGACATAACAAGTTTCTTTCCCAGCAAAGTCACAGACTGGTCGTTTAAAATCTAATATACTGATTATATCCAAGCAGATAAATGTTGATAGAAGCCTCTT----TACCCC-ATGAGAAGCAAATCTAATCTTCCTTGGTTTTAGCAAATCTCAAGGTATCTTTTCATTCCATGCTAATGAGGGAATAGCTTTGTTAGGTATGGGCCCCATCAGGTA--------------------------------------------------------------GTAG------------AAACTTCtagccttaggcaaagtatttaatgtgtctcagtctcagtttcctccataaaatgaaagtgtctgtcacttggctaggtggggattcaatgggacaactaagcttaagtgttaaggattagccaggaacatagtaaatgctaaataaatgacaacAGATAATTTTATACCCTTCTCTGCT---------CTCTTTCAGGAAGGCTG-GCCCCTGAACAGCAGGGCA----------------GGAAAGACATGCCACACAGTGCTCAGCCACTCTGCTCTCTTTAAGGCCAG-GCTGGCAGTGGCC-ATGCTCCTCCACCTGGGGCCACCACTATGGCTGGGTGGCTTCACTAACCTGGATAGAGTTCTGATAACATCACTCTCTCCCAGCCAGACTAGGAGTAGTCACAGCTGCCAGCTATTGCTATCCCTCAGGAGCCCCATCATCCACTGTGGGTCCCTTAGTCCCTGCTAGCACTATCTTA-------ATTAATTAAACCCT-T s panTro1.chr1 116690029 837 + 229575298 AAACCACTCGGGGCTGCCATCTTTACT--------------------------GGAAGTATCCAAAAGCACCACCATC-------------------------------CCGACCTGCA-------------------AGGAAGGT-GGTGACA----CAGTCCCA------GGGAGTGGGACATAAAGTT------GCTGAGGACAACCGATGTC-------TCCTGATAAACAGGAAGACCTGACATAACAAGTTTCTTTCCCAGCAAAGTCACAGACTGGTCGTTTAAAATCTAATATACTGATTATATCCAGGCAGATAAATGTTGATAGAAGCCTCTT----TACCCCAATGAGAAGCAAATCTAATCTTCCTTGGTTTTAGCAAATCTCAAGGTATCTTTTCATTCCATGCTAATGAGGGAATAGCTTTGTTAGGTATGGGCCCCATCAGGTA--------------------------------------------------------------GTAG------------AAACTTCTAGccttaggcaaagtatttaatgtgtctcagtctcagtttcctccataaaatgaaagtgtctgtcacttggctaggtggggattcaatgggaaaactaagcttaagtgttaaggatcaggcaggaacatagtaaatgctaaataaatgacaacAGATGATTTTATACCCTTCTCTGCT---------CTCTTTCAGGAAGGCTG-GCCCCTGGGCAGCAGGGCA----------------GGAAAGACATGCCACACAGTGCTCAGCCACTCTGCTCTCTTTAAGGCCAG-GCTGGCAGTGGCC-ATGCTCCTCCACCTGGGGCCACCACTATGGCTGGGTGGCTTCACTAACCTGGATAGAGTTCTGATAACATCACTCTCTCCCAGCCAGACTAGGAGTAGTCACAGCTCCCAGCTATTGCTATCCCTCAGGAGCCCCATCATCCACTGTGGGTCCCTTAGTCGCTGCTAGCACTATCTTA-------ATTAATTAAACCCT-T s mm5.chr3 59202510 788 - 160575607 AAACAGCACGTGGATAATGTTTTTACCACCATGCATTTGAAAACAGACATTTGGGAATTAAGCAAAAGCAACCCAATCTTGGAAGGGAGAACACTGACGAGGTCTTGGGCAGATCTACCCTGGGCTGCCATCTTTATTAGGCAGGC-GACAGCACCGCCAGCCCTATCTGAGGGAAGGTGGTGACAGAGTCTGGGCGAATGGAGACTGACAAAGCT-------TCCTGACAAATA-GAAGGCTTGACATAATAAGTTATCTTCCCAGCAAAGTAGCAGGCTGGTCTTTTAGAATGTAATGGGCTGATTGCATCT-GGCAGATAACAGGAG-CAGAAACCTCTTTGGATAGCCT-GTGAGCAGCAAATCTAACATTACTTGGTTTTAGCAAACCTCAAGGTATCTTCAC-TCCCTGGCAAATGAGGAAATGTTTTTCTTAAGTGGGGGCTTTACAGGGGA--------------------------------------------------------------GGAG-----------------------------------------------------------------ATAAAAACACA-----------------------GGCCTAAACGGAACAACCGAGC-TGAGTGCTAAGAGTCAGGTAGGCGTGGGCCAAATGCTGTATCATTGGCAATGG---GATCTCCATCCTGTTCAGCC---------ACACTTTTGCAGGGCTG-AGCTGTGAGCAGCTGGGCAAGACACCCTGTGAACTGGAGAGACTTGT--TCCTGTACCCAGTCACTC--CCCTCTTCCAGGCCAG-TGCTGTCCCAGCC-ATGCTCCT---------------------GCTGGTTG---------------------------------------------------------GTGGCAACAGCTCCCCAATGTCACTAGTCCCC-TGTGCTTCACCGTCTGCTATTAGTTCCCTCAACCCTGCGCATATTACCATAT-GTCCCTTCAGTGAAACCCTCT s rn3.chr2 61754847 709 - 258222147 GATCTTCCCTGGGCTGCCATCTTTATT----------------------------AGGTATGCGACAGCACCACCAGC-------------------------------CCTACCTG-A-------------------GGAAATGT-GGTGACA----TTGTCTGG------GGCA---------------------AATGGAGACTGACAAAGCA-------TCCTGACAAATA-GAAGGCCTGACATAATAAGTTATCTTCCCAGCAAAGTAGCAGGCTGGTCTTTTAAAATGTAATAGACTGATTGCATCT-GGCAGATAACACGAG-CGGAAACCTCTTTAGATAGCCT-GTGAGAAGCAAATCTAACATTACTTGGTTTTAGCAAACCTCAAGGTATCTTCAC-TCCCGGGCAAATGAGGAAATGTTTTTCTTAAGTGGGGGCTTTACAGAGAA--------------------------------------------------------------GGAG-----------------------------------------------------------------ATAAAAACATA-----------------------GGCCTAAACAGATCAACTGAGC-TGTGTGCTAAGACTCAGGCGGGCGTGGGCCAAATCCTGTATTATTGGCAATGG---GATCCCCATCCTGTTCAGCC---------ACACTTTTGGGGGACTG-AGTTGTGAGCAGCTGGGCAAGACATTCTGTGAACAGGAGAGACTTGT--CGCTGGACCCAGCCACTC--CCCTCTTCCAGGTCAA-TTTTGCCG-AGCC-ATACTCCT---------------------GCTGGTTGGTGGCATCAGTCTGTCTAGAATCTTGACA----------TACCCAACC---CCAGGGGTGGTAACAGCCCACCAATGTCACTAGTCCCC--------CATTCCCCACTAT-----CCCTCAACCCTGTGCATACTACCACAGAGCCCCTTCAATGAACCCTC-T s canFam1.chr17 56846589 876 + 66886099 AAACCAGCCGGGGCTGCCATCTTTCCT------------------------AGGGGTGTATCTGCAAGCACCACCAGC-------------------------------TCTGCCTATG-------------------AGGACGGTGGGCAACA----TGATCCCT------AGGAGTGGGACACAAAGCC------ACTGAGGACAACTGATGTCACTGCCGTTCTGATAAACAGGAAGACTTAACGAGACAAG--------------AAGTAGCACACTGGCCTTTTAAAATTGAATATACTGATTGTATTA-AGCAGATCAACGTTGATAGAAGCCTCTTTAAGTGCCCC-GTGAGAAGCAAATCTAA--TTCTCTGGTCTTAGCAAGTCTCAAGGTATCTTTTAATTTCATGCTAATGAGGAAGTGGCTGTCCTAAGGAGATGCCTTATAGAGGAACAGATAAAAAGCATAGGCTTTGTAAAAAATTGAGGGCCTCCTGGCTCCCCTggttcagattgtgggtctgtcatttaaaagctgtagccctgggcaaatgagttaaccggtctcacactcaatctcctt-gtaaaatc--agtgcttagctcttggctgggtgaaaattcaaagggatgattaagcttaggtgcttag---------ggaacatagtaaatgctaaataaatggCCGAAGAGCATTTTCTACCCTTGTCTGCCCTGTACTGGCCTCTTAAGGAGGACTGAGCCCCTGGGCTGCAGGGCA----------------GGAGAGCCTGGG--GGCAGGCAAGAGGGGCTC--TGCCCTTGGGGGCCAGTTCTGGCAGTGGCCTCTGCTCCT---------------------GCTGGATGGCTGCGCTCCCCCAGCCAGAATTCTTCTAACGTCACTCCCACCACAcagacccaggggtagtgagcgcccccagctgacaccagcccccaggggccccaaagcgtcccacaggccccatcaaccccccctgaacttctata-------------cggtccct-t a score=0.0 s hg17.chr13_random 122763 14 + 186858 ATAAGAAACAAAAT a score=2876.0 s hg17.chr13_random 122763 9 + 186858 ATAAGAAAC s panTro1.chr1 116690866 9 + 229575298 ATAAGAAAC s mm5.chr3 59203298 9 - 160575607 GGAAGATAC s rn3.chr2 61755556 9 - 258222147 GGAAGATAC a score=455.0 s hg17.chr13_random 122772 5 + 186858 AAAAT s panTro1.chr1 116690875 5 + 229575298 AAAAT a score=2395.0 s hg17.chr13_random 122777 15 + 186858 AGATATAAAGGAAAG s panTro1.chr1 116690880 15 + 229575298 AGATATAAAGGAAAG s danRer1.chr10 18819855 15 - 25436222 AAATATAAAAGTATT a score=497.0 s hg17.chr13_random 122777 15 + 186858 AGATATAAAGGAAAG s danRer1.chr10 18819855 15 - 25436222 AAATATAAAAGTATT a score=2959.0 s hg17.chr13_random 122792 36 + 186858 TACTTCAAACTCTATAGGTAAAAGACTGGCCATAGT s panTro1.chr1 116690895 36 + 229575298 TACTTCAAACTCTATAGGTAAAAGACTGGCCATAGT s canFam1.chr17 56847465 30 + 66886099 tactt-aaaccctttgg--agggtaccatccat--- s danRer1.chr10 18819870 36 - 25436222 TGACACAAATACATTTAACAAAAAACTGAATATAAT a score=6298.0 s hg17.chr13_random 122828 21 + 186858 TTCCTGCTAG--------AACTCTGACAG s panTro1.chr1 116690931 21 + 229575298 TTCCTGCTAG--------AACTCTGACAG s rn3.chr2 61756061 21 - 258222147 CTCCAACCAG--------AATGCCAATAA s canFam1.chr17 56847495 21 + 66886099 ttcctgccag--------aactctgacag s danRer1.chr10 18819906 21 - 25436222 --------AGGAGAGATTAACTAAGATAG a score=29.0 s hg17.chr13_random 122849 1 + 186858 A s panTro1.chr1 116690952 1 + 229575298 A s rn3.chr2 61756082 1 - 258222147 G a score=120.0 s hg17.chr13_random 122849 4 + 186858 ACAA s danRer1.chr10 18819927 4 - 25436222 ATAG a score=29.0 s hg17.chr13_random 122850 3 + 186858 CAA s danRer1.chr10 18819928 3 - 25436222 TAG a score=340.0 s hg17.chr13_random 122850 3 + 186858 CAA s panTro1.chr1 116690953 3 + 229575298 CAA s danRer1.chr10 18819928 3 - 25436222 TAG a score=-509.0 s hg17.chr13_random 122853 5 + 186858 --AAGTC s canFam1.chr17 56847516 5 + 66886099 --aAGTC s danRer1.chr10 18819931 5 - 25436222 ACAGA-- a score=-441.0 s hg17.chr13_random 122853 3 + 186858 --AAG s panTro1.chr1 116690956 3 + 229575298 --AAG s canFam1.chr17 56847516 3 + 66886099 --aAG s danRer1.chr10 18819931 3 - 25436222 ACA-- a score=-934.0 s hg17.chr13_random 122856 2 + 186858 --TC s panTro1.chr1 116690959 2 + 229575298 --TC s mm5.chr3 59203657 2 - 160575607 --TC s canFam1.chr17 56847519 2 + 66886099 --TC s danRer1.chr10 18819934 2 - 25436222 GA-- a score=-5857.0 s hg17.chr13_random 122858 60 + 186858 AGGATAAGGTGTTTGACACTG-AAGCTGTCTCCATGCCAGACCCACT----GCCAGTCCCACCGC------ s panTro1.chr1 116690961 61 + 229575298 AGGATAAGGTGTTTGACACTGAAAGCTGTCTCCATGCCAGACCCACT----GCCAGTCCCACTGC------ s mm5.chr3 59203659 45 - 160575607 CTGGGAAGGAGTCTGACAGGGAAA--TGTC----TGCCA--------------CAGTCCTACTGC------ s rn3.chr2 61756083 45 - 258222147 ATGGGAAGGAGTCTGACAGGAAAG--CGTC----TGCCA--------------TGATCCTCCTGC------ s canFam1.chr17 56847521 62 + 66886099 GGAGTAAGGTTCTTGA-AGTGGGAGCAGTCTCC-TGACAGCCCCGCGGAAAGACTGTCGGAC-GC------ s danRer1.chr10 18819936 49 - 25436222 AAGACAGACAAACCGACTATTACA----------TTACA------------ACTGAACTTAATGCAATCGA a score=2014.0 s hg17.chr13_random 122918 2 + 186858 TC s panTro1.chr1 116691022 2 + 229575298 TC s mm5.chr3 59203704 2 - 160575607 TC s rn3.chr2 61756128 2 - 258222147 CC s canFam1.chr17 56847583 2 + 66886099 CT s fr1.chrUn 163513504 2 - 349519338 TC s danRer1.chr10 18819985 2 - 25436222 TC a score=0.0 s hg17.chr13_random 122920 2 + 186858 AC a score=4011.0 s hg17.chr13_random 122920 2 + 186858 AC s panTro1.chr1 116691024 2 + 229575298 AC s mm5.chr3 59203706 2 - 160575607 AC s rn3.chr2 61756130 2 - 258222147 AC s canFam1.chr17 56847585 2 + 66886099 AC s galGal2.chrUn 124556880 2 + 165033910 AC s fr1.chrUn 163513506 2 - 349519338 AC a score=508538.0 s hg17.chr13_random 122922 433 + 186858 TCACCAAGAGCTATGATGGAGATGGGAGTGCTGGCCCGGCGCTCCCCAACAATCTGCCACTC----------GCCAT-----------CCACCACCCGCACCCATTCAGTCACATGGCATTCATACTGGCCCTCGTCCTCCTTCCTGCTGTTGAAGATGCCCAGGCTGAATGAGTTGGGCTGCACCTGCTCCATCTGGACGCTCCCAAAGCTGCTGCGCTCCCAGTAGGACGAGCCTGGCTGCACGGTGCCATCCCGGTCT-----A-----GCCACATGATATTGCTGCGGCAGTT-------C--TGCCTGTCCACAAGCTGCCAGATGACAGAGAAGCGACCCTGCGGCCTGCCTGCCATGCGGACGCTGCAGGAGAAGCGCAGGTCGTCGCCCTCAAGGATGACGCTGGCATTGCTGGCC-ACCCCCACGGAGATGCTGCTCTCTAGG---A-------------AGAGGGAGAGAGAAA-CACCCT s panTro1.chr1 116691026 434 + 229575298 TCACCAAGAGCTATGATGGATATGGGAGTGCTGGCCTGGCGCTCCCCAACAATCTGCCACTC----------GCCAT-----------CCACCACCCGCACCCATTCAGTCACATGGCATTCATACTGGCCCTCGTCCTCCTTCCTGCTGTTGAAGATGCCCAGGCTGAACGAGTTGGGCTGCACCTGCTCCATCTGGATGCTCCCAAAGCTGCTGCGCTCCCAGTAGGACGAGCCTGGCTGCACGGTGCCATCCCGGTCT-----A-----GCCACATGATATTGCTGCGGTGGTT-------C--TGCCTGTCCACAAGCTGCCAGATGACAGAGAAGCGACCCGGCGGCCTGCCTGCCATGCGGACGCTGCAGGAGAAGCGCAGGTCCTCGCCCTCAAGGATGACGCTGGCATTGCTGGCCGACCTCCACGGAGATGCTGCTCTCTAGG---A-------------AGAGGGAGAGAGAAA-CACCCT s mm5.chr3 59203708 432 - 160575607 TCACCAAGGGCTGTGATAGAGACCAGGGTACTGGCGCGGCGCTCTCCCACAATCTGCCACTC----------TCCAT-----------CTACGGCCCGAACCCACTCCGTCACGTGGCACTCATACTGGCCCTCATCTTCCTTCCTGCTGTTGAAGATGCCCAGGCTGAAGGAGTTGGGCTGCACCTGCTCCATCTGGATGCCTCCATAGCTGCTGCGCTCCCAGTACGCTGAGCCCGGCTGCAAGGTGCCGTCCCGGTCT-----A-----GCCACATGACATTGCTGCGGCGGTT-------C--TGCCTATCCACGAGCTGCCAGATGACCGAGAAGCGGGCCTGCAGCCTGCCCACTGTGCGGACAGTGCAGGAGAAGTGCAGGTCCTCTCCCTCAAGGACGACACTGGCATTGCTGGCC-ACCTCCACGGAGATGCTGCTTTCTGGG---G-------------AGA-AGAGAGAGGGC-CACACT s rn3.chr2 61756132 432 - 258222147 TCACCAAGGGCTGTGATGGAGACCAAGGTACTGGCGCGGCGCTCTCCCACGATCTGCCACTC----------TCCAT-----------CCACAGCCCGAACCCACTCTGTCACGTGGCACTCGTACTGGCCCTCGTCCTCCTTCCTGCTGCTGAAGATGCCCAGGCTGAAGGAGTTGGGCTGCACCTGCTCCATCTGGATGCCTCCATAGCTGCTGCGCTCCCAGTACGATGAGCCCGGCTGCACGGTGCCATCCCGGTCT-----A-----GCCACATGACATTGCTGCGGCGGTT-------C--TGCCTATCCACGAGCTGCCAGATGACAGAGAAGCGGGCCTGCAACCTGCCCACCGTGCGGACAGTACAGGAGAAGTGCAGGTCCTCACCCTCAAGGACGACACTGGCGTTGCTGGCC-ACCTCCACGGACATGCTGCTTTCTGGG---G-------------AGA-AGAGAGAATGC-CACACT s canFam1.chr17 56847587 436 + 66886099 ATACCGAGAGCTGTGATGGAGATGGGGGTGCTGGCCCGGCGCTCCCCGATGACCTGCCACTC----------GCCGT-----------CCACTGCCCGCACCCATTCGGTCACGTGGCATTCATACTGGCCCTCGTCTTCCTTCCTGCTGTTGAAGATGCCCAGGCTGAACGAGTTGGGCTGCACCTGCTCCATCTGGATGCCCCCAAAGCTGCTGCGCTCCCAGTAGGCTGCACCTGGCTGGACGGTGCCATCCCGGTCC-----A-----GCCACATGATGTTGCTACGGCGGCT-------C--TGCCGGTCCACGAGCTGCCAGATGACGGAGAAGCGGCCCTGCGGCCTGCCTGCTGTGCGGATGCTGCAGGAGAAGTGCAGGTTCTCACCCTCAAGGATGACGCTGGCATTGCTGGCC-ACCTCCACGGAGATGCTGCTCTCTGGGGGAG-------------AGAGAGAGAGAGGGC-CACGCT s galGal2.chrUn 124556882 433 + 165033910 TCACCAAGAGCAGTGATGGTCACTGGGGTGCCAGCGTGTCGCTCCCCAGCTATCTGCCACTC----------CCCAT-----------CCAGTGTCCGCATCCACTCGGCCACCCGGCACTCGTAGTGGCCCTCGTCTGCCCTGACACTGTTGAAGATCTCCAGGGTGAAGGAGCCAGGCCGGACCTGCTCCATCTGGATGCCGCCATAGCTACTGCGCTCGGCGTATAACGGGCCGGGCTGCAGGGTGCCATCTCGATCC-----A-----GGCGCACGATTTCGCTTCGCCGGTT-------C--TGCTTGTCCACCAGCTGCCAGGCGATGGAGAGGCGGCTTTGGGGTCCCACATTTGAGCGCACATTGCAGCCAAAGCGCAGGCTTTCCCCTTCCAAGACACTGCTGGCGTTGTTGACA-ATCTCCAAGGAGATGCTGGTCTCTAAG---G-------------AGAGAAACGCATACA-TACAGG s fr1.chrUn 163513508 437 - 349519338 TCACCAACTGTTTTAACAGTGACCGTCTTGTTGACTGACTTTTCTCCAACCTTCTCCCAGTCCAGTTCTGGTTCCGT----------GCCAC--TCTGAAGCCATTCAGTAGCCGTGCAGTGGTACTGGCCCTCGTCTCCGGGCACGGTATTATACAGAGACAGCGTGAACGTGTCGCCCTGCACTCTCTCCGCACGAATCTCCCCAAAGCTGGCTCGCTCCCTGTAGGCTGGGCTGTGTGAGACGGTACCGTCTCGGTCCACCGAA-----GCCAC------TTCCTGAACCGGCTTCGTCCCC--TGTTTGTCCGTCCAGTGCCAGATGACGGAGAGG---------GGACCGGCTGTGACGTAGACCGAACATGTCAGCTGGATGGCGTCGCCCTCGAAGACCTCCGAGGTGTTGCTGGAC-AAAGCCACTGTTATGTTGCTCTCTGGA---A-------------GG--GAAGGGAGAAA-CTCTGT s danRer1.chr10 18819987 453 - 25436222 TTACCGACTGATTTCACAGTGACGGTTTTGATGGCGGATTCGTCTCCTATCTGCTGCCAATT----------CCAGTCGGGTGCAGAACCAC--TCTGTGACCACTCGGTGGCGCTGCATCTGTATTGACCCTCATCTGTGGGGAAGGCATTGTACAGGAACAGAGTGAAGGTGTCGGGTTGAACACGCTCCACCCGGATCTCCCCGAAGCTGCTTCGCTCCCTAAAAGTGGGCCCAGGAGTGACGGTACCCTCACGATCC-----ACAAATGCCACGTT-CACAGCAGGACCCGCT-------CCATCCTTATCTGTCCACTGCCACGTCACTGACAGTGGACCCATAGTACTGCC---------AACAACACAGGTCAGCTGGATGCTCTCACCCTCCATTATCTCTGACGTGTTGCTGGAT-AAGGACACAGTGATGTTACTTCCTAAG---AGAGGCACACAAACAGAGGAAATGAGAAATCACTCT a score=2100.0 s hg17.chr13_random 123355 1 + 186858 G s panTro1.chr1 116691460 1 + 229575298 G s mm5.chr3 59204140 1 - 160575607 G s rn3.chr2 61756564 1 - 258222147 G s canFam1.chr17 56848023 1 + 66886099 G s galGal2.chrUn 124557315 1 + 165033910 G s fr1.chrUn 163513945 1 - 349519338 G a score=-2806.0 s hg17.chr13_random 123356 39 + 186858 GAGGC--TTTATGGTCTCCACA-GCGCCCTCCCCA-CAGAGG-A s panTro1.chr1 116691461 41 + 229575298 GAGGC--TTTATGGTCTCCACA-GTGCCCTCCCCACCAGAGGAA s mm5.chr3 59204141 20 - 160575607 GGGG---TTTACCGTCTCC--------------------AGG-A s rn3.chr2 61756565 39 - 258222147 GGGG---TTTACGGTCTCCATGTGCGCCCTCCTCA-TGGATG-A s canFam1.chr17 56848024 38 + 66886099 GGCC---TTTCTGACTGCTTCT-GCACCCTCCCTC-CAGATG-C s galGal2.chrUn 124557316 41 + 165033910 GAGATGATACACACTTGCCACT-TCTCAGTCTGCA-AGAAGG-A a score=546741.0 s hg17.chr13_random 123395 1586 + 186858 AACAGGAGGAGGGGTGCAAATGGAATCAT---ATTCAGGTACGGTGAGCCTCAGAGGGTCAAAAACACTCTGACC---------------CTAGCTGATGTAAGCCCTGGCTGGTT----CTGGGCATTGCTCCCTGTGGTTTTAGATCT---GATAATCTAG--GATG-TTCTTTGCTGTGTGCAGAGAAC-----TGTGATAACGAGGTTCTAACACCTGAGCCTGAATAAGAACCTAAGAA-ATAC-AACATAGTGGCATGATGATTAGGGC---ATAAAACAATTTATTGGGTAATCTATTCAGCGGCAGTTCAGGGTTTTT-CAAGTTG-AATTTTCAGCAAGAAGAGTAACTCCAAAATCCTACTTCACTTCACTCTTCCTACCATTCGATACTACAGCAGTCAAATAAAAGCTGAA--CATCCATAATGTGCCATTTGAGTCCTTCAGGACAAT-T--TAGGAAGTACGAAAAAAAAAAAACTGACAGT-AAGTATTTGGATGATAACGTG----TGCTTAAGTGTGGGTA---------------------ATAATAGAGCACAGATGGTCTGGTTTTGC--AGTGCATGAGGAGCAGGCTTTCATTCT-TTCATTAACACACAGGAATAAAACAAAGCCAGCAGCTCATCATCCACCACTCTCCCACCTG-----TCCAGTCAGCCCTGGGGC---------------TCCTTTGCTCTCTTTCTAGAAACATTTGGCCAATCAAAAGTTTGGGATAAGGATTCCACTCCCTTCCCTGTCTC-------atctagcctctgctgctcgcttaactatctgaa-tcactcaatcaaattatttaaactcgacatgcctcagcctcttcttctgtaagacaggtagagagccacctttaattgtagaattctttaaatattaaaaagtaaatgagatgatgcatatagattcacctaacacatagtaggtttt-caaaaactggtCATCATGATCATGATTAATTTTACTATTCCACATAAC-TCTTTGTTTTTATAAACATCACAGATAGCCTAATATGTTTTAATTATGCACGTAGTATTTTGTATAATTATCTATATTGAGTTCAGAAGGTCTGTAAGTATTAA---AGAACACAAAG-----TAACTAATTTGGCTCCAATTTT-TGGGTACCACCCACATTAAATACATGCAATAATTT-AAACCAATTAATTAAATCAAATCCCAGATTTTAAGAGGCACACCCAATTACC-AAGAGAAAACACACACATACACATAACAATGCATTTGAATCAAAT---CTTTTCTCTCC-TTTA--TTTCCTCAACAAGCAGAAA----CAAAGATGAGCACTGAGCCTCAAAATGTAGCTCT-TATTATA--GTGAGGATGCCTGCTAGCCATTCTGGATGTGCTTGTTTTATGTGAAAAATAAAAGGTCTGGATGGGGC-AGGGAATAGCAA-TTTTCCCAGGAGGGCGACCTCCCCCAGGAGTCATACCAGGATGATTCATAGAGATAATCAGGCTCCTGAACAGTCACCATCTATAGCACTAA-TGGTTAAGGGGCTGGATTTGGAG----------------------------------acttcttaactctgtaatcctgtggttcttccttaacctaccaaagctccaatttctcatgtgaaaaatggagatactaatagtgcctacttcttaggg-catgacattgacaggattagat s panTro1.chr1 116691502 1576 + 229575298 AACAGGAGGAGGGGTGCAAATGGAATCAT---ATTCAGGTACGGTGAGCCTCAGAGGGTCAAAAACACTCTGACC---------------CTAGCTGATGTAAGCCCTGGCTGGTT----CTGGGCATTGCTCCCTGTGGTTTTAGATCT---GATAATCTAG--GATGCTTCTTTGCTGTGTGCAGAGAAC-----TGTGATAATGAGGTTCTAAGACCTGAGCCTGAATAAGAACCTAAGAATATAC-AACATAGTGGCATGATGATTAGGGC---ATAAAACAATTTATTGGGTAATCTATTCAGCTGCAGTTCAGGGTTTTT-CAAGTTG-AATTTTCAGCAAGAAGAGTAACTCCAAAATCCTACTTCACTTCACTCTTCCTACCATTCGATACTACAGCAGTCAAATAAAAGCTGAA--CATCCATAATGTGCCATTTGAGTCCTTCAGGACAAT-T--TAGGAAATACG--AAAAAAAAAACTGACAGTAAAGTATTTGGATGATAATGTG----TGCTTAAGTGTGGGCA---------------------ATAAGGGAGCACAGATGGTCTAGTTTTGCAGAGTGCGTGAGGAGCAGGCTTTCATTCT-TTCATTAACACACAGGAACAAAACAAAGCCAGCAGCTCGTCATCCACCTCTCTCCCACCTG-----TCCAGTCAGCCCTGGGGC---------------TCCTTTGCTCTCTTTCTAGAAACATTCGGCCAATCAAAAGTTTGGGATAAGGATTCCACTCCCTTCCCTGTCTC-------ATCTAGCCTCTG----------------CTGAATTCACTCAATcaaattatttaaactcgacatgcctcagcctcttcttctgtaagacaggtagagagccacctttaattgtagaattctttaaatattaaaaagtaaatgagatgatgcgtatagattcacctaacacatagtagatttt-caaaaactggtCATCATGATCATGATTAATTTTACTATTCCACATAAC-TCTTTGTTTTTATAAACATCACAGATAGCCTAATATGTTTTAATTATGCATGTAGTATTTTGTATAATTATCTATATTGAGTTCAGAAGGTCTGTAAGTATTAA---AGAACACAAAG-----TAACTAATTTGGCTCCAATTTT-TGGGTACCACCCACATTAAATACATGCAATAATTT-AAACCAATTAATTAAATCAAATCCCAGATTTTAAGAGGCACGCCCAATTACC-AAGAGAAAACATACACATACACATAACAATGCATTTGAATCAAAT---CTTTTCTCTCC-TTTA--TTTCCCCAACAAGCAGAAA----CAAAGACGAGCACTGAGCCTCAAAATGTAGCTCTATATTATA--GTGAGGATGCCTGCTAGCCATTCTGGATGTGCTTGTTTTATGTGAAAAATAAAAGGTCTGGATGGGGC-AGGGAATAGCAATTTTTCCCAGGAGGGCAACCTCCCCCAGGAGTCATACCAGGATGATTCATAGAGATAATCAGGCTCCTGAACAGTCACCATCTATAGCACTAA-TGGTTAAGGGGATGGATTTGGAG----------------------------------acttcttaactctgtaatcctgtggttcttccttaacctaccaaagctccaatttctcatgtgaaaaatggagatactaatagtgcctacttcttaggg-catgacattgacaggattagat s mm5.chr3 59204161 1479 - 160575607 TGCAGGAAGAAGGGTGCAAACCGAATCCCATGATTCTG--ACAGTGAAGCTCAAAGGGCTCAAAA-ACTCTGATTTGTTTTGAACCACAACTTGCTGTTGTAAGGGCTGGCTGGTTGGAACTGGGCACTGCTCCC--------TAGATCT---GGTAGCCTAG--AATG-CCCTTTGCTTTGGGTAGTGGGT-----TGGGATAATGAGGTACTAAGGCCTAAAAGTAAATCAGAAACAGA----ATAT-GATACAATGACATGGTGTTTATGAC---AAAAAATTATTTA-TGGGTGACCTGCTCATCGGCAGCTCAGGGCTTTT--GGCTTG-GAGTTTCAGCGTGAGG---AACTCCCAAACCGTACTGCCTCTCAATCTT-CTACCACTTGAAGCTACAAGAGTCAAACCAAAGCTATACGCATCCTCAGCGTGCCATGTGAATCCTTCA-GAGAAT-TACTAGGAAGTA----GAAAAAAAGTCAGA-----AAGTATTCAGAAGACGGGGTG----TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAATGGGGCACAGATGGTCTAGTCTCACAGAGTGTGTGGAGAGCAAAGTTTCATGCT-TTCGTTAACAGAGAAGAGTAAGCCATGGCCAGTGGCTCACCGTCCACTGCTCTCT--TCTG--AGACCCACTCAG-CCTGGGGC---------------ACCTCTGCTCTCTACCCTG--ACAGTCTGCCAAACAAAGG-TGGGGCTAAGAACTCCACTCCATCCCTAGCTCA-------GTCTAGCCTTTGCCATGCCTTTGGATAGCTGTTCTCAGTTGAGGGGATGATCTAAACTCTACAAGCCTCAGCTTTTTCTTCTGTAGGAT---------GCTATTTTTA-------AACCCACAAAAGATTAAACAGCAAACGAGACAATGCATACAGATT-GTGCAGGACACAGTATGTGTT-TAAAATGTGGTACCCACAGTCATGACTGA-TTTACCATACTTAAGGATATTTCTGCTCTCACAAACAGCATGGCTAACAC----TTTCTTAATTATGCATATGTTATTCTGTATAATTACCTATATTGAGTTCAACAAGCTCATAAGAATTAACACAATACATAATG--TCATAATCAATTTGGATCCAATTTTCTAGGCAACATTCA---------------------------CAATTGATTAAGTCAAGCCCCAGA--TCGAGAAGCGCACCCGATTAC-------------------TGCA---------GCGTTCAGATCTACTTTATTCTTCTCCCC-CTTAATTTTCCCCCACAGGCAGAAACAG-CAAAGATGAGCACAAGACTTCAGCACCTAGCCTT-CGTCATA--AAGAGCAATCC----------------TGTGCTTGTTTCACAGGAACGGT-----GTCTGGACAAGGT--GGGGACAGCAA-TCTTC-----AGGACAGCCTGC-------------CCAGGACA----------------AGGCTCTTGTAGAGCCACTGCTCATGGCAGAAA-TGGTTTGCAGCTTGGCTGTACTG-----------------------------------CCTCCCGACTGCGGGATTTTGGTATTCTTACTAGA-----GGAGCCTTCAATTTATCATGTGCAAAGTTGAGATCCTGCTAGTGC---CTCCTTAGGGTTGTGACACCGAGGGGATGAGGC s rn3.chr2 61756604 1454 - 258222147 CGCAGGAAGAAGGGTGCAGACCGAATCCCATGATTCTG--ACAGTGAAGCTCAAAGAACTCAAAACACTCTGATTTGTTTTGAAACACAACTTGCTGTTGTAAGGTCTGGCTGGTTCGAACTGGGCACTGCTCCC--------TAGATCTGTAGATAGCCTAG--AATG-CTCTTTGCTTTGTGGGGTGGAC-----TGGGATGATGAGGCACTAAGACCTAAAATTGAATCAGAACCTGGAGA-ATAT-GATCCAATATCATGGTGTTTAGGACAAAAAAAAATTATTTA-AGGGTGACCTGCTCAGCTGCAGCTCAGGGCTTTT--GGCTTG-GAGTTTCAGCATGAGG---AACTCCAAGATCCTACTGCACCTCAATCTT-CTACCACTTGAAGCTACAAGAGTCACACAAGAGTTCTACACATCCTTAGTGTGCCATTTGGATCCTCCAGGGAAATAT--TAGGAAGTA-G--AAAAAAATGTCAGG-----AAGTATTTGGAAGATGCCATG----TGCATATGTGTGG------------------------AAAATGGGGCACAGATGGTCTAGTCTCGTAGAGCGTGTGGAGAGCAAAGTTTCGTGCT-TTCGTTAACAGAGAAGAATGAGCCGTGGCCAGTGG--------------CTCTCCGATTAG----ATCCACTCAGCCTGCGGGC---------------ACCACTGCTCTGTACCCTG--ACAGTCTGCCAGACACAGG-TGGGCATGAGAACTCCGCCCCCCCCCCCCCCCCCGGCTGAGTCTAGCCTTTGTCACTCCTTCGGATGGCTGATCTCAGTCGAG-GGATGATTTAAACTCTACGAGCCTCAGCTTTTTCTTCTGTAAGAT---------GCTATTTTTA-------ACCCACAAAAAGATGAAATAGCGAACGAGACAATGCATCCAGATT-GTGCAGCGCACAGTATGTTTT-TAAGATGTGGTACCCACGGTCGTGATTGATTTTACCATACTTAGGAATATTTCTGCTTCCGTAAACAGCATGGCTAACAC----TTTCTTAATTATGCATATGTTGACCTGTATAATTACCTATATTGAGTTCAACGAGCTCATAAGAATTACCACAATACATAGTG--TCATAATCAATTTGGATCCAATTTTCTAGGCACCATTCA---------------------------CAATTGATTAAGTCAAAGCCCAGA--TCGAGAAGCGCACCCGATTAC-------------------TGCA---------GCGTTTGGATCTACGTTATTCTTCTCCCCTTTTA--TTTCCCCCACAGGCAGAAACAG-GAAAGATGAGCACAGGGCCTGGGCACCTAGCCTT-TGTCACA--GTGAATATGC-----------------TGTGCTTGTGTCACAGGAAGGGG-----ATCTGGACAAGGT--GGGAACAGCAA-TCTTC-----AGGGCAGCCTGA-------------GCAGGACA----------------AGGCTTTTGTAGAGCCACTGCCCACAGCAGAAA-TGGTTGGGAGCTTGGCTGCACTG-----------------------------------CCTTCTGCCTGT---ATTTTGGTATTCTTACT------ACCCAAACCTCAATTTATCATGTGCGAAGTTCAGATCCTGCTAGCGC---CTCCTTAGGGTCGTGACGCTGAGGGGACGAGAA s canFam1.chr17 56848062 1609 + 66886099 AAAAGGAGGATGGGGGAAGATGTCATGCT---CTGTAGGTACAGTTCACCTCGGAGGACT-AAAGCCCTCTGGCA---------------CTTACTGCTGCAAGCCCTGGCTGGTT----CTGGCCATTGCTACCTAGGATTTTAGCTCC----AAAACCTAGGAGAGG-CCCTGTGCTGGGCACCAGAAAAATGTGTGGGATAATGAGGGTCTAAGACCTGAGACTGAATCAGAACCTAAGGA-ATACAGACACAATGGCATTACACTTAGGAC---ATAAAACCGTTTATCAGGGAATCTGTTGAGCTGAGGTTCAAGGATTTTTCAGCTCATGAGTTGCAGTAAATTGAGTGACTTGAGAATTCTACTTCACCTCAGTCCTCCCACTGTTCAGTGCTACAGCAGTCAAATAAAAGCGGAA--CATACATAATGGGCCATTTGAGCCCTTCGGGGCAATAT--TAGCAAGCAGA--ACAAAAATGATGGG-----AAGTATTTGGAAGATAACACATGCTTGCTTGGGTGTAGGGA---------------------ATAATGGAGCAGACA---TCTAGTTTCACAGAGTA-GAAGGGAGCGAGCACTCATCCTCTTCATTAAAGCAGAGGAACAGACCAAGGCCAG-----------------CTCTCCATCCTGCCATGCACAGTCAGCCCTGCTTCCACTTAAAACATCCTGCCACTGCT-TCGACCTTAAAACATCCTGCCAATCAAAGT-CTGGGATAAGGA-TCCACTCCCTTTGCTCTCTT------------------GCAATTCACTCAGCTCTCTGAAGTCACTCAATTGAATTATTTCAACTCTATATGCC--------TTCTTCTATAAGATAGGGATGGTGCTATTTATA-TTGTGTAGTTTTTTAAAGATTAAAAAGTCAACAAGACAAGATATGTAAGTC-ACCTAACACTTAGTAGGTTTTCCAAAAAGTGGTCACTGTGATCACGATGAACTTTACTATTCCTGAGAAC--TTTTGTTTTTATGAACACCATGGCTGCTCGAATCTGTCTTAATTATGCATACATTATTTTGTGTAATTATCTATACTGAATTTAAAAACCCCACAAAAATCAA---AGAATACAAAGCATCATAACTAATTCTGCTTCAATTTTCTGGGTACCACCTA----TAAGAAACATAACAATTTAAAATGAATCAATTAAATCAAATCCCAGA--TTAGGAGGCAAACCCAAACACTGAACAGGGGACACATATACACCCATAACCATGCATTTGAATCAATC---TTTTTCCCCCC-ATAA--TTTTCCC-ACAGGCAGAAACAGACAAAGATGAGCACCGAGCCCCAGCAGGTAGTTCG-TGCTATATGGTGAG-ACGTCTGGTATCCATTCTGGACTGGCTTGTTTCACATGAACAAG---AGGTCCGGACAGGGTGGAGAAATGAGAA-TTTTCCCAGGAGGGGAACCTTC-CCCAGAGCCTTACCAAGATGATTTATGGAGATGAGGAGGCTCCTGATTAGCCACCATCtatagcactaagtggataaaagcatggatttggaggcaggtggacctgggctccaggcccagatatactgcttcctaactctacagacttggggttc-tacttaaactacccatacttc-atttctcacatgcagaacagagatgccaaaagtccctacttcttggggtcacgacactgactgtattggat a score=6759.0 s hg17.chr13_random 124981 33 + 186858 gaggtaatTATTTTTCATCATCATTAATAACAA s panTro1.chr1 116693078 33 + 229575298 gaggtaatTATTTTTCATCATCATTAATAACAA s rn3.chr2 61758079 33 - 258222147 AGGGCTGACAGCTTCCAGCATGCTCCATAGACA s canFam1.chr17 56849671 33 + 66886099 gaggtaatTATTTCtcatcatcatcatcatcat a score=578352.0 s hg17.chr13_random 125014 1149 + 186858 ---------CAAT-ATTCCTC-TTTAGATTAAAGACTCATCCCCACTGTTATCAATTCAAAATAAGGGATTAAAAGGGCAACTGCAGCATCAAGGAAGAAA-ATTCTTTCACTTGTCTTAAGCAGGAGAATGACTTGCAGGACCTCACTCTCATC------------------------------------------CCCTACTGTCATCCCAGTGGACGCTTATGCAAGTCCTGGCTCATTTATTGAAA-GGGCTACTGTTTGGT-GGTGCTCTGTTGCTTGAGCAAGCCTGGAA-ACCCACATAGTTAGAATGTGGGGCTACAAGAAGAAATGCTATTTTATTACAGCAGCTGAGGCAAAGGCAACTACAGACCTGGTGCCTCACTGCCCACTAAACACTATTTACA-AGAATTTCCAGGCCTGAGAAAAGGCAGCTGACAATTTTAAACTCTCTGGATTAAGTGAAAACTAGGACAGAACTAATAAAAATCTGAGTACACATTCGCAAATGAAATTTCAAATCAGGAAGTTGATGGTGTAGCACAGGCTAAGCGCAGGGCGGTGGGTGTGGAGTTAGAAGCAAATATTTCCTAATACAA-TG-CAAGCTCAACCACTAACTGAACAATCAGCTCTGTCACTTC-CTGTGTGGTGCTCTGATTTCTTCATTCATTAGATGGATATCATATTGGCCTCTACGAGGATTTGAGAGGTGGGAGCGGAGAAGGAGATGATATATGCAGAAGCACTTTGGTCTCTTAGGAGAAAAAGCGCCATTAAAATCCAAGGCATTATCACCATTACCgatgtgattgttgttgttcttcagccgacttacccaagtggccttgggacaggatctggcggtgctgggggactttaactacccagttatctgctggaaaagcaatatagcaggccacagatcatcaaacaagttctcagaaggggttgggggaaatc--ttaggacaaaaaatataggaagtaaacaga-gtggctgcccttcacttgat-ccttagaaaacaatgaggaattagttgcagatttaaaagtagagagTCCGTGGTTAAGGCAAGCACAGACTGACAGGAAAATAG--TAAAGACAGTGGGCATTCAATTCAATAATTTCAGTTGTACag-tattcagcgagcacctactctatgcaaagcaccatgctaggcattgCAGGGTGG------------AAAAGGCTAAGAAA s panTro1.chr1 116693111 1153 + 229575298 ---------CAAT-ATTCCTCTTTTAGATTAAAGACTCATCCCCACTGTTATCAATTCAAAATAAGGGATTAAAAGGGTAACTGCAGCATCAAGGAAGAAA-ATCCTTTCACTTGTCTTAAGCAGGAGAATGACTTGCAGGACCTCACTCTCATC------------------------------------------CCCTACTGTCATCCCAGTGGACACTTATGCAAGTCCTGGCTCATTTATTGAAAGGGGCTACTGTTTGGTGGGTGCTCTGTTGCTTGGGCAAGCCTGGAA-ACCCACATAGTTAGAATGTGGGGCTACAAGAAGAAATGCTATTTTATTACAGCAGCTGAGGCAAAGGCAACTACAGACCTGGTGCCTCACTGCCCACT-AACACTATTTACA-AGAATTTCCAGGCCTGAGAAAAGGCAGCCGACAATTTTAAACTCTCTGGATTAAGTGAAAACCAGGACAGAACTAATAAAAATCTGAGTACACATTCGCAAATGAAATTTCAAATCAGGAAGTTGATGGTGTAGCACAGGCTAAGCGCAGGGCGGTGGGTGTGGAGTTAGAAGCAAATATTTCCTAATACAA-TG-CAAGCTCAACCACTAACCGAACAATCAGCTCTGTCACTTC-CTGTGTGGTGCTCTGATTTCTTCATTCATTAGATGGATGTCATATTGGCCTCTACAAGGATTTGAGAGGTGGGAGCGGAGAAGAAGATGATATATGCAGAAGCACTTCGGTCTCTTAGGAGGAAAAGCGCCATTAAAATCCAAGGCATTATCACCATTACCGATGTGATTGTTGTTGTTCTTCGGCCGACttacccaagtggccttgggacaggatctggtggtgctgggggactttaactacccagttatctgctggaaAAGCAATATAGCAGGCCACAGATCATCAAACAAGTTCTCAGAAGGGGTTGGGGGAAATC--TTAGTACAAAAAATATAGGAAGTAAACAGACGTGGCTGCCCTTCACTTGATCCCTTAGAAAACAATGAGGAATTAGTTGCAGATTTAAAAGTAGAGAGTCCGTGGTTAAGGCAAGCACAGACTGACAGGAAAATAG--TAAAGACAGTGGGCATTCAATTCAATAATTTCAGTTGTACAG-TattcagcgagcacctactctatgcaaagcaccatgctaggcattgCAGGGCGG------------AAAAGGCAAAGAAA s mm5.chr3 59205721 1095 - 160575607 ---------CTGT-GTTCGCC-ATCATACTCAGTATCCTTCCTCGCTGATTTTACCTCAAGCTGAGAGATTCAGAAGGCAATTTTAGCACCAAGGAAGCAA-ACCTTTCTGTCTGTCTTACACAGAGGAGTGGCCTGCAGGACATCAGCCATGTCTGTCTTACACAGAGGAGTGGCCTGCAGGACACCGGTCATGTGCCCTCCTGTCACAACAGCAGACTCTTATGGACATTCTAG-------------A-TGGCTA----------TGTG-----------GAGAAAGCCTGGAA-AACC--------------TAGGG-----AGAAGGGAAACCCTCT------GGCAGCGGGAGCATGGACAAACACA------GTGCTGTGTAGCCCACT-GTAACTCTTTACACAAGGTTCCCAGGCTTGTAAAAAGGTAGCCGACAAGGTCATCTCCTCCAGACTGAATGAAGACTAGGACAGAACTAATGAGAACCTGAGTGTGTGTTCACAAATGAAATTTCCAATCAGGAGGCTGCTGGCGGGGCCCAGGCTAAGCACAGAGCAGCGGGTTCGGGGTTAG-AGCGAATGTTCCCTAATGCAAGTGCCAAGCTCAACCGCAAAGTGGAAAACCGGATCAGACACTTC-CTCGCGTGTGCTCCGACATCTCCATTCATAAGATGGATGTAACGCTGGCTTGTAC-AGGACTGCAGGACTGGGAGCAGAG----AGATCATATATGCAGAAGCACTTTGGGTTCTTAGGAGGAAAGGTGCCATTAAAATCCAGGGCGTTATCACCATTACCATTG-----ATTGTTGTTCTTCAGTAGACTTACCCAAGTGGCCTTGGGGCAGGATCTGGTGCTGCTGGGGGACTTTAACTACCCAGTTATCTGCTGGAAAAGCAATATAGCAGGCCACAGATCATCAAACAAGTTCTCGGAA-GGGCTGGGGGAAATCTTTTAGTACAAAAGATACAGGAAGCAAACAGT-GTGGCTGCCCCTCATGCCAT-CCTTCTTAAACAATGAGGAATTAGTCTC-------AAGGTACAGAGTCTGTGATTACAGCAGGC--------ACAGGAAAATAGTATAAAGAGTGTGGGCATTCAATCCAGTAGTTTCAACTATACAGATACTTAGCAAGCACCTACTCTATGCAAAGCATCAT-----GCATTGCGAGG----------------AAAGCACAAG--- s rn3.chr2 61758124 1056 - 258222147 ---------GGAT-GCTCGCC-ATCAGTCTGGATTTTCTTCCTCAGTGTTTTCACCTCAAGGTGAGAGACGCAGAAGCCAATTTCAGTATCAAGAAAGAAA-ACCTTCCTGTCTGTCTCATATAGAAGAGTGGCCTGTAGGACATCAGTCATGTG------------------------------------------CCCTCCTGTCACCCTAGCAGACTCTTACGGACATTCTAG-------------A-TGGCTA----------TTTG-----------GAGAGAGCCTGGAA-AACC--------------TAGCC-----AGAAGAGAAGCCCTCT------GGCAGCCGAAGCATGGAGAAACATGGATCTGGTGCTTTGTAGGCCACT-GTAACTATTTACACAGAAT--CCAGGCTTGGAAAGAGGTAGCCTACAAGGTATTATCCTCCAGACCAAAGGAAGACTAGGACAGAGCTCGTGAAAATCTGAGTGTGTGCTCACAAATAAAATTTCCAATTAGGAGGCTGCCGGCAGGGCACAGGCTAAGCACAGAGCAGCAGGTACAGAGTTAG-AGCGAATGTT-CCTAATGCAGTTG-CAAGCTCAACCACAAACTGAAAAGCCGGATCAGACACTTC-CTTGCGTGTGTTCTGACGTCTCCATTCACAAGATGGATGTTGCACTGGCTGGTAC-AGGATTGCAGGACTGGGAGCAGGG----AGATCACATATGCAGAAGCACTTTTGGTTCTTAGGAGGAAAGGTGCCATTAAAATCCAGGGCGTTATCACCATTACCATTG-----ATTGTTGTTCTTCGGTAGACTTACCCAAGTGGCCTTGGGGCAGGATCTGGTGCTGCTGGGGGACTTTAACTACCCAGTTATCTGCTGGAAAAGCAATATAGCAGGCCACAGATCATCAAACAAGTTCTCGGAA-GGGCTGGGGGAAATCTTTTAGTACAAAAGATACAGGAAGCAAACAGT-GTGGCTGCCCCTCATGCCAT-CCTTAGGAAACAATGAGGAATTAGTTTC-------AAAGTGTAGAGTCTGTGGTTACGGCAGGC--------ACAGGAAAACAGTATAAAGAGTGTGGGCATTCAGT--AATAGTTTCGACTGTACAGACATTTAGCAAGCTCCTACTCTATGCAAAGCACCAT-----GCACTGCGAGG----------------AAAGCACAAGAAA s canFam1.chr17 56849704 1151 + 66886099 catcatcatTAATAATTCCTC-TTTAGGTTAATGACCCATCCCCAGCATTATCATTCCATGGGGTGA-ATCGAAAGGACAACC-CAGCATCAAGGGATAAACATCCCTTCGCTTGCCTCTGGCAGAAGGATGACTTGCAGGGCGTCACTGCCATT------------------------------------------CCCTACTATCACCTCAGTGGACTCTTCCATAAGCCCTGGCTGGTTTACGATGG-GGGCTGCTGCTT----GGTGCTCTGCTGCTCGAACAAGCCTGGAAGAACTGCATAGTTCG-ATGTGAACCTCTGGGAAGAAAAACCACAC-----CGGTGGCCCAGGCAAAGGTAGATACAAACCCCGTGCTGCACTGCCTGTT-AAGACTAGTTACA-AGCGTTCCCAGGCCTGAGAAAAGGCAGCTGAGAATTTAAAACTCTCTGGATTAAGTGAAAACTAGGACAGA-CTAATGAGAACCTGACTGCATGTTCGCAAATGAAATTTCAAATCAGGAGGTGGATGATATAGCACAGGCCAAGCGCAGAGCAGTGGATCTGGAGTTAGAAGCAAATATT-CCTAATGCAA-TG-CACGCTCAACCTCTAAT---GAAACTGGCTCAGCTACCTCTCTGCACAGTGCTCTGGCTTCTTCATTCCTGGGATGGATATGATTTGGGCCTCTGCAGGGATTTGAGGGGTGGGAGCGGAGAAGGAAGTGATATATGCAGAAGCACTT-GGGCTCTTGGGAGGAAAAGCGCCATTAAAATCCAAGGTATTATCACCATTACCGATGTG---ATCGTTGTACTTTGGTAGACttacccaagtggccttggggcaggatctggtggtgctgagggactttaactacccagttatctgctggaaaagcaatatagcaggccacagatcatcaaacaagttcttgtaaggggttgggggaaatctcttagtataaaagatataggaagtaaACAGT-GTGGCTGCCCTTCACTGGGT-CCTTAG-----AGTGAGGAATTAGTCGCAGATTTAAAAGTAGAGAGTCTGTGGTTAAGACAAGCACAAACCAACAGGGAAACAG--TCAAGAGAGTGGGCATTCAATTCAACAATTTCAactctacaaatactcagcaagcacctaccctatgcaaagcaccatgctaggcattgcaaggaagaaggaaaaaaaAAGAAGTCTAAGAAG a score=8563.0 s hg17.chr13_random 126163 26 + 186858 CAAAAGAATTTCAAGATAATTAGGTG s panTro1.chr1 116694264 26 + 229575298 CAAAACAATTTCAAGATAATTAGGTG s mm5.chr3 59206816 24 - 160575607 --AAAGAGTTGAAGGTTACTCAAGTG s canFam1.chr17 56850855 26 + 66886099 CGAAATAATTTCAAGATAATTAGGTG a score=191.0 s hg17.chr13_random 126189 2 + 186858 GA s panTro1.chr1 116694290 2 + 229575298 GA a score=6176.0 s hg17.chr13_random 126191 24 + 186858 GCGGGCGGGCGGGCTGCTGAGGAC s panTro1.chr1 116694292 24 + 229575298 GCGGGCGGGCGGGCTGCTGAGGAC s canFam1.chr26 31648611 24 - 41009621 gcgAGCGGGCGGGCCGCGGAGGAC a score=1800.0 s hg17.chr13_random 126215 3 + 186858 GCG s panTro1.chr1 116694316 3 + 229575298 GCG s rn3.chr12 13514123 3 - 46649226 GCG s canFam1.chr26 31648635 3 - 41009621 GCG a score=59866.0 s hg17.chr13_random 126218 118 + 186858 CCGCCTGCGCCTTCCTCCCTGCGTGCCTcgccccgggcggcccggggctgccgcggtgcgcgggtgccgggcccTGCCTTGCCGGCCATGGGGGAAG--------------------------------GGGGCGCC--gcggcggcgctgg s panTro1.chr1 116694319 150 + 229575298 CCGCCTGTGCCTCCCTCCCTGCGTGCCTCACCCCGGGCGGCCTGGGGCTGCCGCGGTGCGCGGGTGCCGGGCCCTGCCTTGCCGGCCATGGGGGAAGGGGGCACCATGGGGCGCCGCCGGCCCTTCCCCGGGGCGCC--GCCgcggcgctgg s mm5.chr5 121991030 136 + 149219885 CTGCCCGCGCCGTCCCC------GGCCTCGCTCCGGGCCCC----GGCTGCGGC-GCGCGCGGGCGCCCGG-CCTGC--TACGGGCCATGGGCGAAGCGGGCGCCGTGGGGCGCCGCCGGCCCTTTCCCGGAGCGCC--GCGGCGGCGCTGG s rn3.chr12 13514132 136 - 46649226 CAGCCCCCGCCGTCCCC------GGCCTCGCTCCCGGCCCC----GGCTGCGGC-GCGCGCGGGCGCCCGG-CCTGC--TGCGGGCCATGGGCGAAGCGGGCGCCGTGGGGCGCCGCCGGCCCTTTCCCGGGGCGCC--GCGGCGGCGCTGG s canFam1.chr26 31648638 120 - 41009621 CCGCCAGCGCCTCCCTCCCTGCGTCCTCGGTcccgggccggccggggctgccgcggcgcgcgggtgccgggcccTGCGTCGCACGCCATGGGGGAAG--------------------------------GGGGCGCCCTGTGGCGCCACCGG a score=50883.0 s hg17.chr13_random 126336 113 + 186858 tggcggcg---gcagcagcagcagcagcggcagcggcagcggtggtggccgggcagcggcggcg-gcggcTAGGGCGCAGGGCGCGCTGCCATGGGCCTGGCCGGGCTGCAGGCGGG s panTro1.chr1 116694469 114 + 229575298 tggcggcg---gcagcagcagcagcagcggcagtggcagcggtggtggccgggccgcggcggcgtgcggcgAGGGTGCGGGGCGCGCTGCCATGGGCCTGGCCGGGCTGCAGGCAGG s mm5.chr5 121991166 110 + 149219885 TGGCGTCG---GCAGCAGCAGCAGCAGCGGCGGCGGCAGCGCTGGTGGCCCGGCCGCGGCG----AGGGCGAGGGTGCCGGCCGCGCCGCCATGGGCCTAGCCGGGCTGCAGGTGGG s rn3.chr12 13514268 113 - 46649226 TGGCGGCGGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGCTGGTGGCCGGGCCGCGGCG----AGGGCGAGGGCGCCGGCCGTGCCGCCATGGGCCTAGCCGGGCTGCAGGTGGG a score=0.0 s hg17.chr13_random 126449 4 + 186858 AAGA a score=1119.0 s hg17.chr13_random 126449 4 + 186858 AAGA s panTro1.chr1 116694583 4 + 229575298 AAGA s mm5.chr5 121991516 4 + 149219885 AAGA a score=28074.0 s hg17.chr13_random 126453 97 + 186858 TGTCCAAGCCCTGCgcggtggaggcggcggcggcggcggtggcagcgacggcCCCGGGCCCGGAGATGGTGGAGCGGAGGGGCCCGGG--GAGGCCCCG s panTro1.chr1 116694587 94 + 229575298 TGTCCAAGCCCCGAACGCTGGAGGCGGCGGCGGCGGC---GGCATCGACGGCCCCGGGCCTGGAGATGGTGGAGCGGAGGGGCCCGGG--GAGGCCCCG s mm5.chr5 121991520 97 + 149219885 TGTGCAAGCCCCGCGCGGTGGAGGCGGCGGCGGCGGCGGTGGCGGCGACGGCCCCGGGCCCGGAGATGGTGGAGCAGAGGGGCCCGGG--GAGGCCCCG s rn3.chr12 13514381 92 - 46649226 TGTGTCGGGCCCGGGCGCATGGGGTGGGGCGGGCGCAGGAGGCCCCGG-----CCGGGCCGGGTG--GGAAGGGCGCCGCGGCTCGGGCCCGGGCCCCG a score=1334.0 s hg17.chr13_random 126550 7 + 186858 CACCGAC s panTro1.chr1 116694681 7 + 229575298 CACCGAT s mm5.chr5 121991617 7 + 149219885 CAGCGAC a score=807.0 s hg17.chr13_random 126557 2 + 186858 GG s panTro1.chr1 116694688 2 + 229575298 GG s mm5.chr5 121991624 2 + 149219885 GG s rn3.chr2 147340480 2 + 258222147 GA a score=114448.0 s hg17.chr13_random 126559 112 + 186858 GGAGAACGTATTTACCGGGCAGTCAAAGATCTATTCCTACATGAGCCCGAACAAATGCTCTGGAATGCGTTTCCCCCTTCAGGAAGATAACTCAGTTACACATCACGAAGTC s panTro1.chr1 116694690 111 + 229575298 GGAGAACGTATTTACCGGGCAGTCAAAGATCTATTCCTACATGAGCCCGAACAAATGCTCT-GAATGCGTTTCCCCCTTCAGGAAGAGAACTCAGTTACACATCACGAAGTC s mm5.chr5 121992755 112 + 149219885 GGAGAACGTGTTTGCTGGGCAGTCAAAGATCTATGCCTACATGAGTCCGAACAAGTGCTCTGCAATGCGCTCTCCACTTCAGGAAGAGAACTCGGTTGCCCATCATGAGGTC s rn3.chr2 147340482 112 + 258222147 GGAGAACGTGTTTGCTGGGCAGTCAAAGATCTATGCCTACATGAGTCCGAACAAATGCTCTGGAATGCGTTCTCCACTGCAGGAAGAGAACTCCGTCGTACATCATGAGGTC s canFam1.chr26 31650481 112 - 41009621 GGAGAATGTATTTACCGGGCAATCAAAGATCTATTCCTACATGAGCCCCAACAAATGCTCTGGAATGCGTTCCCCCCTTCAGGAAGAGAACTCAGTTGCACATCACGAAGTC s galGal2.chr15 7479319 112 - 12438626 GGAGAATGTGTTTACTGGTCAATCCAAAATCTACAGCTACTTGAATCCCAACAAATCTCCTGGTGCTCGCTCCCCACTTCAAGAAGAAAACTCTGTCATGTATCACGAAGTG a score=38300.0 s hg17.chr13_random 126671 44 + 186858 AAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGAAAC------GAGA s panTro1.chr1 116694801 44 + 229575298 AAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGAAAC------GAGA s mm5.chr5 121992867 44 + 149219885 AAATGCCCGGGGAAACCATTAGCTGGAATCTACAGGAAGC------GAGA s rn3.chr2 147340594 44 + 258222147 AAATGCCCGGGGAAACCATTGGCCGGAATCTACAGGAAGC------GAGA s canFam1.chr26 31650593 44 - 41009621 AAATGCCAGGGGAAGCCATTAGCTGGACTCTGCAGGAAAC------GAGA s galGal2.chr1 102137093 46 - 188239860 AAAGGCTAGAGGAAA----GGGCTGCACTTCCCTATAAGCCTACGTGAGA a score=162836.0 s hg17.chr13_random 126715 222 + 186858 AGAGAAAAGAAATGCTGGGAACGCAGTACGGAGCGCCATGAA---GTCCGAGGAACAGAAGATCAAAGACGCCAGGAGACGTCCCCTGGTACCTTTTCCAAACCAAAA--ATCTGAAGCAGCAGAACC---TCCAAAAACTCCACCCTCATCTTGTGATTCCACCAATGCAGCCATCGCCAAGCCGGCCCTGAAAAAGCCCATCAAGGGCAAACAGCACCCCCGAAAAAA s panTro1.chr1 116694845 222 + 229575298 AGAGAAAAGAAATACTGGGAACGCAGTACGGAGCGCCATGAA---GTCCAAGGAACAGAAGATCAAAGACGCCAGGAGAGGTCCCCTGGTACCTTTTCCAAACCAAAA--ATCTGAAGCAGCAGAACC---TCCAAAAACTCCACCCTCATCTTGTGATTCCACCAATGCAGCCATCGCCAAGCAAGCCCTGAAAAAGCCCATCAAGGGCAAACAGGCCCCCCGAAAAAA s mm5.chr5 121996201 222 + 149219885 AGAGAAAAGGAACACCGGGAACGTTATACGAAGCGCTGTGAA---GTCAGATGAACAGAAGAGCAAAGACACCAGGAGAGGTCCCCTGGCGCCTTTTCCAAACCAAAA--ATCCGAAGCAGCAGAACC---TCCAAAAACTCCACCCCCATCATGTGATTCTACCAATGTAGCAGTCGCTAAGCAAGCCCTGAAAAAGTCCCTCAAGGGCAAACAGGCCCCTCGGAAAAA s rn3.chr2 147340638 222 + 258222147 AGAGAAAAGAAACGCTGGGAATGTTATCCGAAGCGCTGTGAA---GTCAGAAGAACAGAAGAGCAAAGATACCAGGAGAGGTCTCCTGGCGCCTTTTCCAAACCAAAA--ACCTGAAGCAACAGAACC---TCCAAAAACTCCACCCCCGTCATGTGATTCTACCAGTGTAGCGGTTGCTAAGCAAGCCCTGAAAAAGCCCCTCAAGGGCAAGCAGGCCCCTCGGAAGAA s canFam1.chr26 31653570 222 - 41009621 AGAGAAAAGAAACAGTGGGAACGCAGTACGGAGCGCCATGAA---GTCTGAGGAACAGAAGCTCAAAGACGCCAGGAGAGGTCCCCTGGCACCTTTTCCAAACCAAAA--ATCTGAAGCAGCAGAACC---TCCAAAAACTCCGACCTCGTCTTGTGATCCTCCCATTACGGCTATCGCCAAGCAAGCCCTGAAGAAGCCCATCAAGGGCAAACAGGCTCCTCGGAAAAA s galGal2.chr1 102137139 198 - 188239860 AGAGACAAACATTGCAGTAAATTTTTTCCCAGGCTCCTTCAGTTTGTTAGGTCAACTCCCTGGCAAGGATAACTGGGGCAA-CACTTGCCAAGTTTGCCATGCCAAGGCTACCTGTACTAGAGAGACCACATCAAGTCAGTTGACCCTCTTTTTTTA-----CCCATCACATCTG-------------CCTGATAAAGAC---AAAAGGCACACAGGCGA---------- a score=-627.0 s hg17.chr13_random 126937 2 + 186858 AG- s panTro1.chr1 116695067 2 + 229575298 AG- s rn3.chr2 147340860 1 + 258222147 -G- s canFam1.chr26 31654219 2 - 41009621 AG- s galGal2.chr1 102137337 2 - 188239860 -GC a score=1500.0 s hg17.chr13_random 126939 1 + 186858 C s panTro1.chr1 116695069 1 + 229575298 C s mm5.chr5 121996830 1 + 149219885 C s rn3.chr2 147340862 1 + 258222147 C s canFam1.chr26 31654221 1 - 41009621 C s galGal2.chr1 102137339 1 - 188239860 C a score=75272.0 s hg17.chr13_random 126940 80 + 186858 TCAAGGAAAAACG----CAACAGAATCGCAAAC---------ACGGATTTCTACCCTGTCCGAAGGAGCTCCAGGAAGAGCAAAGCCGAGCTG s panTro1.chr1 116695070 82 + 229575298 TCAAGGAAAAACG----CAACAGAATCACAAAC-------TTACGGATTTCTACCCTGTCCGAAGGAGATCCAGGAAGAGGAAAGCCGAGCTG s mm5.chr5 121996831 82 + 149219885 TCAAGGGAAAACC----CAGCAGAATAGAAAAC-------TCACAGATTTCTACCCTGTGCGGAGGAGTTCCCGGAAGAGCAAAGCTGAGCTG s rn3.chr2 147340863 82 + 258222147 TCAAGGGAAGACA----CAGCAGAATAGAAAAC-------TCACAGATTTCTACCCCGTGCGAAGGAGCTCCAGGAAGAGCAAAGCTGAGCTG s canFam1.chr26 31654222 82 - 41009621 TCAAGGAAAAACA----CAACAGAATCGCAAAC-------TCACGGATTTCTACCCCGTGCGAAGGAGCTCCAGGAAGAGCAAAGCTGAGCTG s galGal2.chr1 102137340 79 - 188239860 TCCAGCAGGGATGTTTTCAGCAAGGTTG--------------GCAGATACACAGCGACCACGACAGGGCTCCATGAAGAGCAAAGCAGAGCTT s danRer1.chr16 22786991 89 + 29693911 TCAGTGCTGAGAG----CAAGAGTCCTGCAAACCGGAAGGTCACCGATTATTTCCCCATCAGAAGAAGCTCCAGAAAGAGCAAGAGTGAACTG a score=0.0 s hg17.chr13_random 127020 11 + 186858 CAGTCTGAAGA a score=15591.0 s hg17.chr13_random 127020 11 + 186858 CAGTCTGAAGA s panTro1.chr1 116695152 11 + 229575298 CAGTCTGAAGA s mm5.chr5 122002598 11 + 149219885 CAGTCTGAAGA s rn3.chr2 147340945 11 + 258222147 CAGTCTGAAGA s canFam1.chr26 31659104 11 - 41009621 CAGTCTGAAGA s galGal2.chr1 102137419 5 - 188239860 ------GAGGA s fr1.chrUn 313680725 11 - 349519338 CAGTGTGAAGA a score=3388.0 s hg17.chr13_random 127031 2 + 186858 AA s panTro1.chr1 116695163 2 + 229575298 AA s mm5.chr5 122002609 2 + 149219885 AA s rn3.chr2 147340956 2 + 258222147 AA s canFam1.chr26 31659115 2 - 41009621 AA s galGal2.chr1 102137424 2 - 188239860 AG s fr1.chrUn 313680736 2 - 349519338 GA s danRer1.chr16 22787080 2 + 29693911 AA a score=36376.0 s hg17.chr13_random 127033 29 + 186858 GGAAAAGAATAGATGAATTGATTGAAAGT s panTro1.chr1 116695165 29 + 229575298 GGAAAAGAATAGATGAATTGATTGAAAGT s mm5.chr5 122002611 29 + 149219885 GGAAGAAAATAGATGAGCTGATTGAGAGC s rn3.chr2 147340958 29 + 258222147 GGAAGAAGATAGATGAGCTAATTGAGAGC s canFam1.chr26 31659117 29 - 41009621 GGAAAAGAATAGACGAGTTGATTGAAAGT s galGal2.chr15 7481939 29 - 12438626 GGAGGAAAATCGATGAACTAATTACAAGT s fr1.chrUn 313680738 29 - 349519338 AGAAGCAGATAGATGATCTCATCACCAAC s danRer1.chr16 22787082 29 + 29693911 GGTGAAGCACAGAGCGGCTGATTTATAAT a score=25194.0 s hg17.chr13_random 127062 16 + 186858 GGGAAGGAAGAAGGAA s panTro1.chr1 116695194 16 + 229575298 GGGAAGGAAGAAGGAA s mm5.chr5 122002640 16 + 149219885 GGGAAGGAAGAAGGCA s rn3.chr2 147340987 16 + 258222147 GGGAAGGAAGAGGGCA s canFam1.chr26 31659146 16 - 41009621 GGGAAGGAAGAAGGAA s galGal2.chr15 7481968 16 - 12438626 GGGAAAGAAGAAGGAA s fr1.chrUn 313680767 16 - 349519338 GGAATAGAGGAAGGAA a score=5190.0 s hg17.chr13_random 127078 3 + 186858 TGA s panTro1.chr1 116695210 3 + 229575298 TGA s mm5.chr5 122002656 3 + 149219885 TGA s rn3.chr2 147341003 3 + 258222147 TGA s canFam1.chr26 31659162 3 - 41009621 TGA s galGal2.chr15 7481984 3 - 12438626 TGA s fr1.chrUn 313681000 3 - 349519338 TGG a score=10443.0 s hg17.chr13_random 127081 7 + 186858 AGATTGA s panTro1.chr1 116695213 7 + 229575298 AGATTGA s mm5.chr5 122005315 7 + 149219885 AGATTGA s rn3.chr2 147341006 7 + 258222147 AGATTGA s canFam1.chr26 31660391 7 - 41009621 AGATTGA s galGal2.chr15 7482496 7 - 12438626 AGATTGA s fr1.chrUn 313681003 7 - 349519338 AGGTGCA a score=322172.0 s hg17.chr13_random 127088 185 + 186858 CCTCATCGATGGCAAAGGCAGGGGTGTGATTGCCACCAAGCAGTTCTCCCGGGGTGCCTTTGTGGTGGAATACCACGGGGACCTCATCGAGATCACCGACGCCAAGAAACGGGAGGCTCTGTACGCACAGGACCCTTCCACGGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACT s panTro1.chr1 116695220 185 + 229575298 CCTCATCGATGGCAAAGGCAGGGGTGTGATTGCCACCAAGCAGTTCTCCCGGGGTGACTTTGTGGTGGAATACCACGGGGACCTCATCGAGATCACCGACGCCAAGAAATGGGAGGCTCTGTATGCACAGGACCCTTCCACAGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACT s mm5.chr5 122005322 185 + 149219885 TCTAATTGATGGCAAAGGCAGGGGTGTGATCGCTACCAAGCAGTTCTCCAGGGGAGACTTTGTGGTAGAATACCATGGGGACCTCATTGAAATCACTGATGCCAAGAAGCGGGAGGCTCTGTACGCACAGGACCCCTCCACTGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACT s rn3.chr2 147341013 185 + 258222147 TCTAATCGATGGCAAAGGCAGGGGTGTGATTGCTACCAAGCGATTCTCCCGGGGAGACTTTGTGGTAGAATACCATGGAGACCTCATTGAAATCACCGATGCCAAGAAGCGGGAGGCTCTGTACGCACAGGACCCCTCCACGGGCTGCTACATGTACTATTTTCAATATCTGAGCAAAACCTACT s canFam1.chr26 31660398 185 - 41009621 CCTCATTGATGGCAAGGGCAGGGGTGTGATCGCCACCAAGCAGTTCTCCCGGGGCGAGTTTGTGGTAGAGTACCACGGGGACCTCATCGAGATCACCGATGCCAAGAAGCGGGAGGCTTTGTATGCACAAGACCCCTCCACGGGCTGCTACATGTACTATTTTCAGTATCTGAGCAAAACCTACT s galGal2.chr15 7482503 185 - 12438626 TTACATTGATGGCAAAGGGAGAGGAGTAATTGCTACTAAACATTTTAATCGTGGAGAATTTGTAGTTGAATATCATGGAGATCTCATAGAGATCACTGATGCTAAAAAGCGGGAGGCTGTGTATGCTCAAGATCCATCCACAGGCTGCTATATGTACTATTTTCAGTACCTCAGCAAAACGTACT s fr1.chrUn 313681010 185 - 349519338 TCATGTGGAAGGAAAGGGCAGAGCAGTGTTTGCCACGCGGTGTTTCCAGAAAGGCGAGTACGTGGTGGAGTACCACGGCGACCTGCTGCAGTTCACCGACGCCAAAAAGCGGGAGGCAGAATATGCCCAGAACCCCGCCACCGGCTGCTACATGTACTACTTCCAGTACCTCTGCAAGAAATACT s danRer1.chr16 22787396 185 + 29693911 CTTCATCGAGGGGAAGGGTCGAGGGGTTTTCCCGACCCACCCGTTCCAAAAGGGTCAGTATGTGGTGGAATATCACGGAGATCTGCTGCAGATCACAGACGCCAAGCAGAGAGAGGCTCTATACGCACAAGACCCCTCCACCGGCTGCTACATGTACTACTTCCAGTATCTCAACAAAACATACT a score=283995.0 s hg17.chr13_random 127273 164 + 186858 GCGTGGATGCAACTAGAGAGACAAATC--------GCCTAGGAAGACTGATCAATCACAGCAAACGTGGGAACTGCCAAACCAAACTGCACGACATCGACGGCGTACCTCACCTCATCCTCATCGCCTCCCGAG-ACATCGCGGCTGGGGAGGAGCCCCTGTATGACTATGGG s panTro1.chr1 116695405 172 + 229575298 GCGTGGATGCAACTAGAGAGACAAATCCAAATCGAACCCAGGAAGACCGATCAATCACAGCAAATGTGGGAACTGCCAAACCAAACTGCACGACATTGACGGCGTACCTCACCTCATCCTCATCGCCTCCCGAG-ACATCGCGGCTGGGGAGGAGCTCCTGTATAACTATGGG s mm5.chr5 122006029 164 + 149219885 GCGTGGATGCCACTCAAGAAACGAACC--------GCCTAGGGAGACTCATCAATCACAGTAAGTGTGGGAACTGCCAGACCAAACTGCACGACATCGACGGCGTGCCTCACCTCATCCTCATCGCCTCCCGAG-ACATCGCAGCTGGGGAGGAGCTCCTGTACGACTATGGG s rn3.chr2 147341198 164 + 258222147 GCGTGGATGCCACTCAAGAAACGAACC--------GCCCGGGGAGACTGATCAATCACAGTAAGTGTGGGAATTGCCAGACCAAACTGCATGACATCTACGGCGTGCCTCACCTCATCTTCATAGCCTCCCGAG-ACATTGCAGCCGGGGAGGAGCTCCTGTACGACTATGGA s canFam1.chr26 31661301 164 - 41009621 GCGTGGATGCAACTAGAGAGACAAATC--------GCCTGGGAAGACTGATCAATCACAGTAAATGTGGGAACTGCCAAACCAAACTGCACGACATTGACGGCGTGCCTCACCTCATCCTCATCGCCTCCCGAG-ACATCAAGGCTGGGGAGGAACTCCTGTACGACTATGGG s galGal2.chr15 7483309 164 - 12438626 GTGTTGATGCTACAAAAGAAACTAATC--------GTCTGGGAAGACTGATTAATCACAGCAAATGTGGCAATTGTCAAACAAAGCTTCATGACATTGATGGCGTGCCTCATCTCATATTGATAGCTTCCAGAG-ACATTAAAGCAGGTGAAGAACTGTTGTATGACTATGGA s fr1.chrUn 313681283 165 - 349519338 GCGTGGACGCCACCAAAGAGACCGGCC--------GCATGGGCCGGTTGATAAACCACAGCAAGAACGGAAACTGCCAAACCAAACTCCACGACATCAACGGCGTCCCGCACCTCATCCTCGTCGCCTCCCGGGAACATCGACGAGGGCGAGGAGCTGCTGTACGACTATGTG s danRer1.chr16 22790421 164 + 29693911 GTGTGGACGCTACGAAGGAGTCGGATC--------GGCTGGGCCGGCTCATCAACCACAGTAAAAACGGGAACTGTCAAACCAAACTGCACGCCATCGCCGGAAAACCTCACCTGATCCTGGTGGCGTCCAGAG-ACATCCAGGAAGGAGAAGAGCTGCTGTACGATTACGGC a score=83053.0 s hg17.chr13_random 127437 48 + 186858 GACCGCAGCAAGGCTTCCATTGAAGCCCACCCATGGCTGAAGCATTAA s panTro1.chr1 116695577 48 + 229575298 GACCGCAGCAAGGCTTCCATTGAAGCCCACCCGTGGCTGAAGCATTAA s mm5.chr5 122006193 48 + 149219885 GACCGAAGCAAGGCCTCCATCGAAGCCTACCCCTGGCTGAAGCACTAA s rn3.chr2 147341362 48 + 258222147 GACCGGAGCAAGGCCTCCATCGAAGCCTACCCTTGGCTGAAGCACTAA s canFam1.chr26 31661465 48 - 41009621 GATCGCAGCCGGGCTTCTATCGAAGCGTACCCCTGGCTGAAGCATTAG s galGal2.chr15 7483473 48 - 12438626 GACAGAAGCAAAGCTTCCATTGAAGCTCATCCATGGCTAAAACACTAA s fr1.chrUn 277030418 48 - 349519338 GACCGCAGTAAGGCCTCGGTTTTGGCTCATCCTTGGCTCAAATACTGA s danRer1.chr16 22790585 48 + 29693911 GACCGCAGTAAATCCTCCATCGAGGCGCACCCGTGGCTCAAACATTAA a score=100.0 s hg17.chr13_random 127485 1 + 186858 C s danRer1.chr16 22790633 1 + 29693911 C a score=200.0 s hg17.chr13_random 127485 2 + 186858 -CC s panTro1.chr1 116695625 2 + 229575298 -CC s mm5.chr5 122006241 2 + 149219885 -CC s rn3.chr2 147341410 2 + 258222147 -CC s canFam1.chr26 31661513 2 - 41009621 -CC s fr1.chrUn 277030466 2 - 349519338 AC- a score=12001.0 s hg17.chr13_random 127487 44 + 186858 GGT----GGGCCCCGCGCCCTCCCCGCCCCACTTTCCCTTCTTCAAAG s panTro1.chr1 116695627 45 + 229575298 GGT---GGGGCCCCGCGCCCTCCCCGCCCCACTTTCCCTTCTTCAAAG s mm5.chr5 122006243 42 + 149219885 ACG----TGGCCTCCCTGCCTCCCTG--CCACCCTGCCTCCTTCAAAG s rn3.chr2 147341412 46 + 258222147 AACCATGTGGCCTCCCTGCCTCCCTG--CCACCCTGCCTCCTTCAAAG s canFam1.chr26 31661515 31 - 41009621 TCC----CGGCTCCC-------------CCATCCTCCCTTCTTCCATG a score=150536.0 s hg17.chr13_random 127531 181 + 186858 GACAAAGTGCCCTCAAAGGGA--ATTGAA------TTTTTTTTTA--------------------------------------------------------------------CACACTTAA---TCTTAGCGGATTACTTCAGATGTT--------TTTAAAAAGTATATT-AAGATGCCTTTTCACTGTAGTATTTAAATATCTGTTACAGGTTTCCAAGGTGGACTTGAACAGATGGCCTTATATTACCAAAACTTTTATATTCTA s panTro1.chr1 116695672 184 + 229575298 GACAAAGTGCCCTCAAAGGGA--ATTGAA---TTTTTTTTTTTTA--------------------------------------------------------------------CACACTTAA---TCTTAGCGGATTACTTCAGATGTT--------TTTAAAAAGTATATT-AAGATGCCTTTTCACTGTAGTATTTAAATATCTGTTACGGGTTTCCAAGGTGGACTTGAACAGATGGCCTTATATTACCGAAACTTTTATATTCTA s mm5.chr5 122006285 219 + 149219885 GACAAAGTGCCCTCAAAGGGA--AATGAA------TTTTTTTTTA------------------------------CACACACACACGCACACACACACACATACACACACACTCACACTCAC---TCTTAGCTAATTACTTCAAATGTT--------TTTAAAAAGTATATTAAAGATGCCTTTTCA-TGTAGTATTTAAATATCTGTTACAGGTTTCCAAGGTGGACTTGAACAGATGGCCTTATATTACCAAAACTTTTATATTCTA s rn3.chr2 147341458 224 + 258222147 GACAAAGTGCCCTCAAAGGGA--AATGAA---------TTTTTTACACACACACACACACACACACACACACACACACACACACACACACA----------------------CTCACTCAC---TCTTAGCTAATTACTTCAAATGTT--------TTTAAAAAGTATATTAAAGATGCCTTTTCA-TGTAGCATTTAAATATCTGTTACAGGTTTCCAAGGTGGACTTGAACAGATGGCCTTATATTACCAAAACTTTTATATTCTA s canFam1.chr26 31661546 187 - 41009621 GACAAAGTGCCCTCAAAGGGA--ATTGATTTTTTTTTTTTTTTTA--------------------------------------------------------------------CACACTTAA---TCTTAGCAGATTACTTCAGATGTT--------TTTAAAAAGTATATT-AAGATGCCTTTTCACTGTAGTATTTAAATATCTGTTACAGGTTTCCAAGGTGGACTTGAACAGATGGCCTTATATTACCAAAACTTTTATATTCTA s galGal2.chr15 7483572 196 - 12438626 GACTTAGTGCTCTGCATGGAGTCAGTGGA------TTTTTTTTTT------------------------------CCTCCGTCCTCAC-------------------------TTCCCTCAGCTTTCTTAGAGAACTGCCTATGGTGTTCTGAGCTCTTTGAAAACTACATT---------TTTACTTTGCAGTATTTAAATTCCCATTACAGATTTCCAA-GCAGGCTCAAGT--TTTCTCTTAGATTGCCAAAACTTCTGTACTGTA a score=597939.0 s hg17.chr13_random 127712 1385 + 186858 GTTGTTTTTGTAC-TTTTTTTGCATACAAGCCGAACGTTTGTGCTTCCCGTGCATGCAGTCAAAGACTCAGCACAGGTTTTAGAGGAAATAGTCAAACATGAACTAGGAAGCTAGGTGAGTCTCCTTTCTCCAGTGGAAGAGCCGGGAC-CTTCCCCCTGCACCCCCGAAATCCAGGGACGGGGTGTGAG-----GAAGATGCTGCC-TCCCAGTG------GCCTGGAC-GGGATGTTTCCAAGCTCTTGTTCTCCT-AACGTC-TCGA-CAGGCA--CTCACTGAAGTGT-ATGAATATTTTTT-AAAAAGGTTTTTGCAGTAAGCT-AGTCTTCCCCTCTGTTTTCTCGAAAGCTTACTGAGCCCTGGGCCCCAA-GCACGGGCCAGGCATAGATTTCCTCTTCCAC-AAGC-TGCCGCTTTTCTGGGCAGCTTGAAGCATCAGGGCGCGAAATCAAACTAGATGTGGGCA-GG-GAGAGTGTTGCTTACCT-GCCCTGCTGGGGCAGGGTTTCCTGAAACTGGGTTAATTCTTTATAGAAATGTGAACACTGaatttatttt-aaaaa----taataataaaaa-----------ttaaaaataattaaaaaaa--------------------aCACAGAAAACAACTT-ACATGTATATAGGTCTTGAAGTGAGTGAAGTGGCTGCttttttttttttttt-----tttgctttttttttt--------------ttgctttttGTAGAAGAGATTGAGAATGGTAC-----TCTAATCAAAAATAAAGTTTTGTAGTGGGACCAGAAATTACTTACCT----GACATCCACCCCCA---TTCCCCCTC--------ATCCTGCTGGGGTTGAAAGTTCCAGACCTGCTGTCGAGGCTTTGTGTTTGTCAGATACCCAGTGTCCTCCT------------GCAAGGACACAAC--TGAGCTGAGGTGTGAGCCTAGGAGCC-------CAGGACCCCTGACCCCAGCCGA--TGCTGCCAGCCT--CAGAAAGACAC-CCAGGTGT------GCAGGGGGGCACACAGGGCCCGGCAGCCCCCAGGAATCAAGGATAGGG-CTAAGGTTTTCACCTTAACTGTGAAGGCAGGAGGAATAGGTGGCTGCTTCCTCCCGCCCTTCACAGAACTGATTCTCACACACTGTCCCTTCAGTCCAGGGGGCC-GGGGCTCAGGAGCCATGACCTGGTGTCTCCT-GCCCACCCTGGTCCCAGGTAAATGTGAATGGAGACAGGTATGAGAGCCTGTCCTCATCTTTGA-TTCCCCCCCCAACCCCACCT-CGGGCCTTACGACGGTGTTACCTAAGAAAGTCTTCCCTCC--CACCCCCGCCCCCCGCTAGCC-TGGTCAGTGGTCAGCAAATTGGAAGAGGATCCGATGGGA--GTGTAAATATGAGAC-ACAATG-TCTTGATTATACCTGTTTGTGGTTTAGCTTTGTATTTAAAC------------------GAGGAAATAAACTTGAAAATTATTTGTCATCATAA s panTro1.chr1 116695856 1381 + 229575298 GTTGTTTTTGTACTTTTTTTTGCATACAAGCCGAACGTTTGTGCTTCCCGTGCATGCAGTCAAAGACTCAGCACAGGTTTTAGAGGAAATAGTCAAACATGAACTAGGAAGCTAGGTGAGTCTCCTTTCTCCAGTGGAAGAGCCGGGAC-CTTCCCCCTGCACCCCCGACATCCAGGGACGGAGTGTGAG-----GAAGATGCTGCC-TCCCAATG------GCCTGGAC-GGGATGTTTCCAAGCTCTTGTTCTCCT-AACGTCTTCGACCAGGCG--CTCACTGAAGTGTGATGAATATTTTCTAAAAAAGGTTTTTGCAGTAAGCTAAGTCTTCCCCTCTGCTTTCTCGAAAGCTTACTGAGCCCTGGACCCCAAGGCACGGGCCGGGCATAGATTTCCTCTTCCACAAAGC-TGCCGCTTTTCTGAGCACCTTGAAGCATCAGGACGCGAAATCAAACTAGCTGTGGGCAGGG-GAGAGTGTTGCTTACCT-GCCCTGCTGGGGCAGGGTTTCCTGAAACTGGGTTACTTCTTTATAGAAATGTGAACACTGaatttattttaaaaaa----taataataaaaa-----------ttaaaaataattaaaaaaa-------------------CACACAGAAAACAACTT-ACATGTATATAGGTCTTGAAGTGAATGAAGTGGC-------------------------TGCTTTTTTTTTT--------------TTGCTTTTTGTAGAAGAGATTGAGAATGGTAC-----TCTAACCAAAAATAAAGTTTTGTAGTGGGACCAGAAATTACTTACCT----GACATCCACCCCCA---TTCCCCCTC--------ATCCTGCTGGGGTTTAAAGTTCCAGACCTGCTGTCGAGGCCTTGTGTTTGTCAGATACCCAGTGTCCTCCT------------GCAAGGATGCAAC--TGAGCTGAGGTGTGAGCCTAGGAGCC-------CAGGACCCCTGACCCCAGCCGC--TGCTGCCAGCCT--CAGAAAGGCAC-CCAGGTGT------GCAGGGGAGCACACAGGGCCTGGCAGCCCCCAGGAATCAAGGATAGGGACTAAGGTTTTCACCTTAACTGTGAAGGCAGGAGGAATAAGTGGCTGCTTCCTCCCACCCTTCACAGAACTGATTCTCACACACTGTCCCTTCAGTCCAGGGGGCC-GGGGCTCAGGAGCCATGACCTGGTGTCTCCT-GCCCACCCTGGTCCCAGGTAAATGTGAATGGAGACAGGTATGAGAGCCTGTCCTCATCTTTGATTTTCCCCCCCAACCCCACCT-CGGGCCTTACGACGGTGTTACCTAAGAAAGTCTTCCCTCCCACACCTCCCCCCCCCGCTAGCC-TGGTCAGTGGTCAGCAAATTGGAAGAGGATCCGATGGGA--GTGTAAATGTGAGAC-ACAATGTTCTTGATTATACCTGTTTGTGGTTTAGCTTTGTATTTAAAC------------------AAAGAAATAAACTTGAAAATTATTTGTCATCATAA s mm5.chr5 122006504 1303 + 149219885 GTTGTTTTTGTAC--CTTTTTGCATACAAGCTGAACGTTTGTGCTTCCCG----CGCAGTGTAAGACTCGGCACAGGTTTTAGAGAATGGAGTTGAACATGAACTAGGAAGCCGGG--------CTCTGCCCAAGATGAAAGCCAGGAC----TCCCCCACACCCC--ACGTCCAAGGACAGGCCGGTGT-----GAGGGCGCTGCC-CCCCCACGCAC--AGCCTGGAC-GGGATGTCTCCAAGCTCTTGTTCTCCTCAGCATC-CTGA-CAGGCGTACACACTGTCGTGT-ATGAATATTTTTT-AGCAAAAGTTTCACAGTAAGCT-AGTCTTCCCCTCTGCTTTCTCCAAAGCTTACTGAGCCCGGGGCTGGGA-GGCCCGGCCAGGAACAGA---CCTCTTCCAC-AGGCTTACGGCTTTTCCAGGCACCTTGAAGCATCAGGGTGGACAGTCAGATTAGAGGCGGGCCGGG-AAAAGCACTGTTCTCCT-GCTCAAGAAGGGCA-GGTCTCCTGAAACTGCATTAATTCTTTATAGAAATGTGAACACTGAATTTATTTTAAAAAA----TAATAAAAACAA------AACATTTTAAAAAAATCAAAAAAAGAAAAAATGGAAAAAAAAACCCACAGAAAACAACTTAACGTGTATATAGGTTTTGAAGGGAGTGAAATGAATGCGGTTTTCTTTTCTTCTGGGGTTTATTTTTTTTCTTTTTGGCTTGGCTGGTTGGTTTGTGTAGAGAAGATTTGAGATGGTACTCTATTCTAATCAAAAGTGAGGTTTTGTAGTGGGACCAGAAATTACTAAGCC----CACACCCCCTCCC-----TAACCCCA--------ATTCTGCT-GCATGGGAAGTTCTCCACCTGCTGCCAAGG------------CAGAGCTCC--TGGTCTCCC------------ATGAAGATGCTG--------TCAGCTGTCAGTCTAGCACCC-------CGGAGCATCAGGCACCAGACG---TGCTT---------------GGCAC-TAGGGT-------------------------ACCTGGCAGCCGGCAGAGAACCAGGATGATG-CTTCGGTTTTGAC-----CTGTGAGAGCAAGAG---TAGGTGGCTTCCTTCTCCCTCCCTGGGGAGGACT--------CACCATTCACCTTCAGTCCAGGGGCCT-GGGGTTCAGGAGC-----------------------------------------------------CAGGTATAAGACCCTACCCTCGT----------CCCCTACACCCCCATCTCCCAGGCTCATGATGGTGCTACCTACGAAAGTCTCCCCCGC---------ACCCTCTGCTAGCC-CAGTCAGTGGTCAG--ACTTGGAGGAGGATCCGACAGGAGGGTGTAACTGTGAGATAAAAATG-TCTTGGTTGTACCTGTTTGTGGCTTAGCTTTGTATTTAAATAGCAAACAAACAAAAAAAAAGGAAATAAACTTGAAACTTATTTGTCATCTTAA s rn3.chr2 147341682 1296 + 258222147 GTTGTTTTTCTAC--CTTTTTGCATACAAGCTGAACGTTTGTGCTTCCCG----CGCAGTGTAAGACTCGGCACAGGTTTTAGAGAATGGAGGTGAACATGAACTAGGAAGCCGGG--------CTCTGCCCAAGATGAAAGCCAGGAC----TCCCCCGCACCCC--ACGTCCGGTGTGAGGCCGGTGT-----GAGGGTGCTGCCACCCCCACGCAC--AGCCTGGAC-GGGATGTCTCCAAGCTCTTGTTCTCCTCAACGTC-TTGA-CAGGTGTACACATTGACGTGT-ATGAATATTTTTT-AGCAAAAGTTTCACAGTAAGCT-AGTCTTCCCCTCTGCTTTCTCCAAAGCTTACTGAGCCCGGGGCTCGGA-GGCCCGGCCAGGAACAGA---CCTCTTCCAC-AGGCTTACGGCTTTTCCAGGCACCTTGAAGCATCAGGGTGGGCAGTCAGACTAGAGGCGGGCCGGG-AAAAGCACTGTTCTCCT-GCCCAAGAAGGGCA-GGTCTCCTGAAACTGCATTAATTCTTTATAGAAATGTGAACACTGAATTTATTTTAAAAAA----TAATAATAAAAAAAACAAAATAGTAAAAAAAAAATTAAAAAGAAAAAAATGGAAAAAAAAA-CCACAGAAAACAACTTAACATGTATATAGGTTTTGAAGGGAGTGAAATGGATGCAGTTTTCTTTTCTTCTGGGGTTGATTTTTCTTTTT---GGCTTGGCTGGTTGGTTTGTGTAGAGAAGATTTGAGATGGTACTCTATTCTAATCAAAAGTGAGG-TTTATAGTGGGAGCAGAAATTACTAAGCC----CACACCCCCTCCC-----CAACCCCA--------ATTCTGCT-ACGTGGGAAGTTCTCTACCTGCTGTCAAGG------------CAGAACCCC--TGGTCTCCC------------GTGAAGATGC---------------CGTCAGTCCTGT-------------GGGCATCAGACACCAGATG---TGTTT---------------GGCCC-TAGGGT--------ACCTGGCAGCCCGCAAGGCTTAGCAGC---CAGAGATC-AGGAGGATC-CTTCAGTTGTAAC-----CTGCGATAGCAAGAG---TA---GGCTTCCTTCTCCCTCCTTGGGGAGGACT--------AACCATTCACCTTCAGTCCAGGGGGCCTGGGGTTCAGGAGC-----------------------------------------------------CAGGTATAAGAGCCTACCCTTGT----------CCCCAGTACCTCCAACTCCCAGCCTCATGATGGTGCTACCTAAGAAAGTCTTCCCCGC---------ACCCTTTGCTAGCC-CAGTCAGTGGTCAG--ACTTGGAGGAGGATCCGACAGGAGGGTGTAACTGTGAGAT-AAAATG-TCTTGGTTGTACCTGTTTGTGGCTTAGCTTTGTATTTAAATAGCAAACAAAAA------AAGGAAATAAACTTGAAACTTATTTGTCATCTTAA s canFam1.chr26 31661733 1456 - 41009621 GTTGTTTTTGTAC-CTTTTTTGCATACAAGTCAAACGTTCGTGCTTCCCGTGCATGCAGTCAAAGACGCAGCACAGGTTTTAGAGGAAAGAGT-GAACATGAACTAGGAAGCTGGGTGACTC--CCACCTCCCGCCGAAGAGCCAGGACTCTCCTCCCCACACCCC---TGCCGGCGGGCCGTGCACGAGTCCCAGAAGACGCTGCT-GCCCGAGGCCTCAGGCCTGGCCAGGGGTGTTCCCAAGCTCTTGTTTTCCT-GACGTC-TGGA-CAGGCG--CACATATAAGTGT-ATGAATATTTTTT-AA-AAAGGTTTTGCAGTAAGCT-AGTCTTCCCCTCTGCTTTCTCGAAAGCTTACTGACCCAGTGGCCCCCAGGTGCGGGCCGGGCCTCGGTTTACTCTTCCAT-AGGC-TGCCGCTTTTCCGGGCACCTTGAAGCATCAGGGCGGGTCATCAGAGTAGATGTGAGCAGGGAAAAAGCATTGCTTGCCTCGCCCTGCCAGGGCAGGATTTCCCAAAACTGGGTTGATTCTTTATAGAAATGTGAACACTGaatttattttaaaaaaatagtaataataaaaatttaaaaatttaaaaagacaaaaaaaaaaa----------aagaaaaaaaCCACAGTAAACAACTT-ACATGTATATAGGTCTTGAAGTGAATGAAGTGGCTGCGtttttttcttttc------tttttcttttttttt---gtttttgtt--tttgtttttgtAGAAGAGATTTGAGATGGTACTCTATTCTAATCAAAA---AAGTTTTGTAGCGGGACCAGAAATTACTTACCCATGACCCACCCACCCCCACCCTTCACCCTCCCCACCAGATTCCAAT-TGGTTGAAAGTTCCAGACCTGCTGTC-AGGCTTTCTGTTTGTCAGACCACC--TGGTGTCCTTCCTGCAAAAAAATGAAGATGCAGCCATGAACCGAAGGGGGAGCCTGCAGACCCGAAATGCAGGGCCCCC-ACCCCAGCCGCCGTGCCGGGTGCCTTGCTGGGTGTCTTGCTGGGTGCTGGCTACCAGCGGAGTGGGCAG-GCCCAGCAGCC--CAGGGATCAAGGCTAAGC-ATAAAGTCTTCACCTCGACGGTGAC-GCAGGAGGAGTAGGTAGCTTCCTCCTCCCTCCTGAAGGGGGACCTATTCTCACTCTATTAACCTGCAGTCCAGGGGGCC-GCGGCTCTGGAGCCTGGACCTGGGGTCTCCCAGCCTCCCCTGGTCCCAGGT-AATGTGAACAGAGGCAGGTGTGAGAGCCTGTCGTCA-----------CCTTGATGCCC-------CCGGCCTCACCACGGTGCTACCTAAGAAAGTCTTCCCCCC---------ATCCCGCACTTGCCGTGGTCAGTGATCAGAGAATTGGAGGAGGATCCGAC-GGAGTGTGTAAATGTGAGAT-AAAATG-TCTTGGTTGTACCTGTTAGTGGTTTAGCTTTGTATTTAAAA---AAAAAAAAA------AAGGAAAT-AACTTGAAAATTATTTGTCATCATAA a score=23208.0 s hg17.chr13_random 129097 32 + 186858 AAATGAAAC----AAATTAAAATATTTATTGCCAGG s panTro1.chr1 116697237 32 + 229575298 AAATGAAAC----AAATTAAAATATTTATTGCCAGG s mm5.chr5 122007807 36 + 149219885 GAATAAAGCAAAAAAATTAAAATATTTATTGCCAGG s rn3.chr12 13533319 36 - 46649226 AAATAAAGCAAAAAAATTAAAGTATTTATTTCCAGG s canFam1.chr26 31663189 34 - 41009621 AAATGAAAC--AAAAATTAAAATATTTATTGCCAGG a score=-2055.0 s hg17.chr13_random 129129 17 + 186858 --AAAAAAAAGATAATTAG- s panTro1.chr1 116697269 19 + 229575298 AAAAAAAAAAGATAATTAG- s mm5.chr5 122007843 9 + 149219885 -------CAAGGCCAC---- s rn3.chr12 13533355 13 - 46649226 -------CAAGGGCACCTAT a score=1213.0 s hg17.chr13_random 129146 3 + 186858 GTA s panTro1.chr1 116697288 3 + 229575298 GTA s mm5.chr3 59206857 3 - 160575607 GTG s rn3.chr2 61759224 3 - 258222147 GTG a score=335553.0 s hg17.chr13_random 129149 1012 + 186858 TGTGTGTGCATGGTTTTTAACAAAATA-ATAATAAGCATAAAAGAAAATAATCCAG-TTGATGAGAAAAGAAGAAAAGACTAACAAGAGGACCCCTATGGCTACTTTTTACTTCACACTTGAAGAGaaatattttaaatattaaaacatataaataaaaa------GTAAAGGAAATTATTACAAGGCTCAGAGAAAGAATAGTTTTAGCAGCTGAGAAAAGGTTAAAGATTAGTCTTAAAACTTTACCA-CTTGTTTAAAATCAGAGCATCGTAGGTTTTTATT-------CTCTTTACTAAAAACAGAACTATGGGAG-AAT---GAGATTAATAAGAATATCTTGATACTGTGAATGTTTAAACACAACACAAGCAAACACCGGTAGT-TTCTGGAATCCCTAGCAATGGCCACTACCCACCCACACAAGGCCAGTCTACATGAAGGCTGGGAGCCCACTG-----AGGCAGCCTCAGA-AATCAGCTAAGCTTA-----AAAGACTATGCTCCAGGAAGATGTGAGAGGTCCCAT------------------------------------------------------------------------------------CCACTGACTTTTAGAAACACAATTTCAACAGGGAAAAGCCATTTAGGGAAATGCCAGCCTTTATACCT-GAAAAACCCAGATGGCAAA-----TCCTTAATAATGCACTTTATGAT-TTAAAATCCTCCCATAAAAGACCAGCTCTCCTTAAGTGAGATTTCAAGGCAGGCATCTATCTACCCACTTCTTCTGGGACTTGATTCCCACACAAGAG----CAAACAGCTTTCTGGGATTCCTGGTTTCCCTCCAAGCTGAGCTGGCACTGCTTGTGTATG-CACA-------GGGCTGCTAGCAATCAGATAGGCCTATGCC-CAGCCCTAGACTGCCCTGATCCT-----GGACACCCCTGATCCTGATCCTCTGCT--ATGGGGAGACTGCTAAATGTAGGCAGGTGGGCTACAACAGGGAAGAGAGGCTCAATGGTTTTTCCCCCAGCTCTGCATTAACCTCGGGGGTTCCATCTG-CCTCCCCTCACCCTCACCACACTATTCTCTCTCCCCCTAC-CTCTCCT-AAATGAT s panTro1.chr1 116697291 1018 + 229575298 TGTGTGTGCATGGTTTTTAACAAAATATATAATAAGCATAAAAGAAAATAATCCAGTTTGATGAGAAAAGAAGAAAAAACTGACAAGAGGACCCCTATGGCTACTTTTTACTTCACACTTGAAGAGaaatattttaaatattaaaacatataaataaaaa------GTAAAGGAAATTATTACAAGGCTCAGAGAAAGAATAGTTTTAGCAGCTGAGAAAAGGTTAAAGGTTAGTCTTAAAACTTTACCA-CTTGTTTAAAATCAGATCATCATAGGTTTTTATT-------CTCTTTACTAAAAACAGAACTATGGGAG-AAT---GAGATTAATAAGAATATCTTGATACTGTGAATGTTTAAACACAACACAAGCAAACACCGGTAGT-TTCTGGAATCCCTAGCAATGGCCACTACCCACCCACACAAGGCCAGTCTACATGAAGGCTGGGAGCCCACTG-----AGGCAGCCTCAGAGAATCAGCTAAGCTTA-----GAAGGCTATGCTCCAGGAAGATGTGAGAGGTCCCAT------------------------------------------------------------------------------------CCACTGACTTTTAGAAACACAATTTCAACAGGGAAAAACCATTTAGGGAAATGCCAGCCTTTATACCT-GAAAAACCCAGATGGCAAA-----TCCTTAATAATGCGCTTTATGAT-TTAAAATCCTCCCATAAAAGACCAGCTCTCCTTAAGTGAGATTTCAAGGCAGGCATCTATCTACCCACTTCTTCTGGGACTTGATTCCCACACAAGAG----CAAACAGCTTTCTGGGATTCCTCGTTTCTCTCCAAGCTGAGCTGGCACTGCTTGTGTATG-CACA-------GGGCTGCTAGCAATCAGATAGGCCTATGAC-CAGCCCTAGACTGCCCTGATCCT-----GGACACCCCTGATCCTGATCCTCTGCT--ATGGGGAGACTGCTAAATGTAGGCAGGTGGGCTACAACAGGGAAGAGAGGCTCAACGGTTTTTCCCCCAGCTCTGCATTAACCTCGAGGGTTCCATCTGTCCTCCCCTCACCCTCACCACACTATTCTCTCTCCCTCTACTCTCTCCTAAAATGAT s mm5.chr3 59206860 945 - 160575607 TGTGTGTGTGTGTGTTCGTTCAAAAT--ATAATAAGCATGACAGAAAACAAGC------------------------------------GTCCTCTAT------TTTAGACTTCACAC-AACAGAGAAACATTTCAAATACATAAATGTGTAAATAAAAA-----TGTAAAGAAACCAATGACAAGGCTGAGAGGAGGAACAGCCCTGGGAGCTGAGAAAAGGTTAAAGGTTAGTTCTTACACTGGACCATCTTGTTTAAAATCAGAGCATTGTAAGTTTTGATTAA-----CTTTCTGCTAAAAATAGAACTGTGAGAG-AAG---AAGATTAATAAGTTAATCCTAACACTATGGATATTTAAACACGGCATGCATACACACTGTTCAT-CTCTGGAGTCTC-AGAAAAGGGTACCACCCATCCAGACACTG-CATTGCCCCTGGAGGCTGAG---TCCCTG-----GAACAGCCTTGAGAGGT---CCAAGCTCT-----CCTAGC-ACATCCCAGGAAGAC---AGAGAGCCCATCCACTGA----------------------------------CTGATGCATGTGTGTGTTAGGATGAACCTAACGCTGTGTGCACCCACTGACTTTTAACAATGCAATTTCAGTACAGAAGAGACAATTAGGGAAAGGCCTGCATTGATACCTGGAAGAACCCAGATGGCAAAGC--CTTCTTAATAATGCAGTTGATGATGTTCAAGTCCTCCCATAAGAGATGAGCTCTCCTTAAGTAAGATTTCAAGGCAGGCCTCTGCCCA-------CTTCTGGGATTTAATTCTCCCAAAGGTG----CAAATGAC---------TTCCTGGTCTTACTCCTAACTGAGCTGGCAAGGCTGGTGTCTG--ACAGCAGCTTGAGCTGCTTGAGCTCAAGTATGGGTA--------CCCTCTGCAGC------CCA-----GGACA----TGCCCCTGCTGCTCTGC---------AGACCTGGGGATGGAGG----------------GGGTGGAGAGGC---------CTCCTCTCTGGTCAGC-TTCACCCCCCAAATTCTGCCCCTTCTGCCTATAC----------CTACTGTCTTTCCC---AC-TTTTCCA-CGATGTC s rn3.chr2 61759227 943 - 258222147 TGTGTGTGTGTGTGTTT---CAAAAT--ATAATAAGTATGACAGAAAGCAAGC------------------------------------CTCCTCTAT------TTTAGACTTCATAC-AACAGAGAGACATTTCAAATACATAAATGTGTAAATAAATAAAAAATGTAAAG-AAACAATTACAGGGCTAAGAGGAGGAACAGACCTGGGAGCTAAGAAAAGGTTAAAGGTTAGTTCTTAAACTGGACCATCTTGTTTAAAATCAGAGCATTGTAAGTTTTGATTAA-----CTTTCTGCTAAAAACAGAACTGTGAGAGAAAG---GAGATTAATAAGAGCATCTCGACACTATGGATGTTTAAACACGGCAT--GCACACACTGTTCAT-CTCTGGAGTCCCCAGAAAAGGGTACCACCCATCCAGACACCG-CGGTTCACATGGAGACGGAG---CCCCGG-----GAACAGCCCTGAGAGGT---CTGAGCTCT-----CCGAGC-ACATCCCAGGAAGAC---AGCGAGCCTGTCCACTGGCTGCTGTGTGTGCACATTAGGCTGAACCTAACGCCGTGTGCAC----------------------------------CCACTGACTTTTAACAGTGCAATTTCAGTTCAGAAAAGACAATTAGGGAAATGCCCACATTGATACCTGGAAGAACCCAGATGGCAAATC--CTTCTTAATAATGCAGTTGATGATCTCCAAATCCTCCCAGAAGAGATGAGCTCTCCTTAAGTAAGATTTCAAAGCAGGCTTCTGCCCA-------CTTCTGGGATTTAATTCCCACAAAGGTG----CAAATGAC---------TTCCTGGTCTTGCTCCTAACTGAGCTGGCAAGGCTGGTGTTTTACGCC-------AGGTTGCTCGAGGTCAAATGTGTGGGTACCATATCTCTA----GC------CCA-----AGACA----TGGCCCTGCTGCTCTGC---------AGACCCGGGGCTGGAGG----------------AGGTGGAAAGGC---------CCCCTCTCTGGTCAGC-TTTACTCC--AAATTTTGCCCCTTCTCCCTTTAC----------CTATTCTTTCTCCC---AC-TTCTCCA-AGATGTC s canFam1.chr17 56850881 972 + 66886099 ----TGTGAGAGATTT-----AAAA---AAAATAAATACATAAGAAAGGAATC----CTGGTGACAAGGAAAGAAAAAATGGCAA----GACCCATAT--CTACTTGTTCCTTCTCGTTTGAAGAGaattatattaaaaatataaaaGTGTAAATTGAAA-----CGTAAAGAGAATCATTACAAGGCTGAGGGAAAGAAGAGTCTGAGCAGTTGAGAAAAGGTTAAAGGTTAGTTTAAAAACTTCACTGGCTTGTTTAAAATCAGGGCACTGTAAGCTTTAAATTATCTTTTTTTTTTCTAAAAACAGAACTATGAGAG-AATTGAGATGTTAATGAGAACATCCTGACCCTAGGGGAGAGTAAACACAGTAGGAGCAAATGCAGGTAGTACCCCAAAATCTC-AGCCACAACGGTTCCCCACCCAGACAAGGCCAGCTTCCATGGAGGCAGGAGCCCACCTATCGATAGATAGCCTTAGA-CACCGGCTAAGCTTTAAGTGAAAGGCTACACTCCAGGAGGGCAGGAGAGGTCCCAT------------------------------------------------------------------------------------TCACTGACTTTTGAAAATACAATTTCAACAGGGAAGAGACATTTAGGGAAATGCC-----TTGTAACT--CAAAACCCAGGCAGCAAGTCTTTTTTTTAATAACATGCTTTATGAT-TTAAACTCCTCCCACAAAAGACCAGCCCCTCGTAAGTAAGATTTCAAGGTAGGCATCTACCCA----CTTCTTCTGGGACTCAATTCCCACATGGGAGCAAACAAACAGCCATCCTGGATTCCTGATGCTCCTCCGAGCTGGGCTGGCATGGCTGGCATTTA-CAGA-------GGGCTGCTAATGCTCAG-----------------CTCTGGGATGTCCCCTCCCACCTGCAAACA-----CATCCCAATATTCTGCCTAACTGGGAGGTTGCTAAGTATGGGCAGGCGAGCTGAAGA-AGGGAGAGGGATTAAGAAGG-GTTTTCTCTGCCTTGCCCTTGCCC----------------TCTGCCCACAC----------AGCTCACCTGTCCCCTGAA-TTCTCTT-CGGTGAC a score=1215.0 s hg17.chr13_random 130161 27 + 186858 GCTGAGC-----------CAAAGGAG-----AAGAAAGCAGCA s panTro1.chr1 116698309 27 + 229575298 GCTGAGC-----------CAAAGGAG-----AAGAAAGCAGCA s mm5.chr3 59207805 33 - 160575607 ACTAGTC-----ACCACACCAGAAAC-----GAGTAAGTGGCG s rn3.chr2 61760170 33 - 258222147 ACTAGTC-----ACCGCACCAGAAAC-----TAGTAAGTGGCA s canFam1.chr17 56851853 43 + 66886099 GTCAAGCTACAGACAGAACCAGGGGGAGGCAAAGGAGGGGGCA s galGal2.chr1 102137891 27 - 188239860 GCAGTGT-----------CCTGGGAG-----AGGGTGGCGAGG a score=685.0 s hg17.chr13_random 130188 8 + 186858 CATCTCTC s panTro1.chr1 116698336 8 + 229575298 CATCTCTC s mm5.chr3 59207838 6 - 160575607 CA--CTTC s rn3.chr2 61760203 6 - 258222147 CG--CTTC s canFam1.chr17 56851896 8 + 66886099 CATCTCTC s galGal2.chr1 102137918 4 - 188239860 ----TCCC s fr1.chrUn 163516190 8 - 349519338 CAGATCAT a score=612483.0 s hg17.chr13_random 130196 403 + 186858 TACTTACCGAGGGGGAGGACTATGATGGGGATGTTCTTGGGACGCTTGCTCTCCTTATCAGTGAATTCCCCCGTCACGGTTTTCTCTCGCTCAGTCACCCGGCAGTTGTATTTCCCGCTATCTTCCTGGCGGAGGTGGTAGATCTTCAGCACAAAGACACTGTCGCTCTCTTTGGCCACGTTAAGCTGTCCCCTGGCTTCCCGGTGAGCAAATTCGCTGTTGAGGACAGGCACAGCGTTAGGACCCATGGTGGCGATGAGCGAGCTGTTGAAGGCCCAGGAGACAGCAAAGTAACGGTCGGGAACATTCTGAGCCTCCAGGATGCATCTGAACTCCACCGGCTCGCCCACCGTGTGCAGCCGCTTCTCTGTTTCCAACCGAACAGTGAATTCTTTGTCTGAGA s panTro1.chr1 116698344 403 + 229575298 TACTTACCGAGGGGGAGGACTATGATGGGGATGTTCTTGGGATGCTTGCTCTCCTTATCAATGAATTCCCCCGTCACGGTTTTCTCTCGCTCAGTCACCCGGCAGTTGTATTTCCCGCTACCTTCCTGGCGGAGGTGGTAGATCTTCAGCACAAAGACACTGTCGCTCTCTTTGGCCATGTTAAGCTGTCCCCTGGCTTCCCGGTGAGCAAATTCGCTGTTGAGGACAGGCACAGCGTTAGGGCCCATGGTGGTGATGAGCGAGCTGTTGAAGGCCCAGGAGACAGCAAAGTAACGGTCGGGAACATTCTGAGCCTCCAGGATGCATCTGAACTCCACCGGCTTGCCCACCGTGTGCAGCCGCTTCTCTGTTTCCAGCCGAACAGTGAATTCTTTCTCTGAGA s mm5.chr3 59207844 403 - 160575607 TACTTACTGAGGGGCAGCACGACGATGGGGATGTTCTTGGGCCGCTTGCTCTCCTTGTCTATGAACTCGCCAGTGACAGTCTTCTCTCGCTCAGTCACCCGGCAGTTGTATTTGCCACTGTCTTCCTGGCGGAGGTGGTATATCTTCAGCACAAAGACACCATCACTCTCTTTGGCCACCTTAAGCTGTCCCTTGGCTTCGCGGTGGGCAAAATCGCTGTTGAGGACTGGCACGGCATTAGGCCCCATGGTGGCAATGAGTGAGCTGTTGAAGGCCCAGGAGACGGCAAAGTACCGGTCGGGAATGTTCTGAGCCTCTAGGATACATCTGAACTCCACCGGCTCACCCACCGTGTGCAGCCTCTTATCTGTTTCCAGACGCACGGTGAACTCTTTGTCTGGGA s rn3.chr2 61760209 403 - 258222147 TACTTACTGAGGGGGAGCACGACGATGGGGATGTTCTTGGGCCTCTTGCTTTCCTTGTCGATGAACTCGCCAGTGACGGTCTTCTCTCGCTCAGTCACCCGGCAGTTGTATTTGCCACTATCTTCCTGGCGAAGGTGATATATCTTCAGCACAAAGACACCATCACCCTCTTTGGCCACCTTAAGTTGTCCCTTGGCTTCACGGTGGGCAAATTCGCTGTTGAGGACTGGCACAGCATTAGGTCCCATGGTGGCAATGAGTGAGCTGTTGAAGGCCCAGGAGACGGCAAAGTACCGGTCTGGAATGTTCTGAGCCTCTAGGATACATCTGAACTCCACCGGCTCACCCACTGTGTGCAGCCTCTTATCTGTTTCCAGTCGCACGGTGAACTCTTTGTCTGGGA s canFam1.chr17 56851904 403 + 66886099 TACTTACTGATGGGGAGGACTATGATGGGGATGTTCTTGGGCCGCTTGCTCTCCTTGTCGATGAATTCCCCGGTGACCGTCTTCTCTCTCTCTGTGACTCGACAGTTGTATTTGCCGCTGTCTTCCTGGCGGAGGTGGTAGATTTTCAGCACAAAGACACTGTCACTGTCTTTGGCCACTTTAAGCTGGCCCCTGGCTTCCCGATGGGCGAATTCACTGTTGAGGACGGGCACCGCATTGGGCCCCATGCTGGCAATGAGCGAGCTGTTGAAGGCCCAAGAGACGGCAAAGTAGCGGTCAGGAATGTTCTGAGCCTCCAGGATGCATCTGAATTCCACCGGCTCCCCCACCGTGTACAGTCGCTTCTCCGTTTCCAGCCGAACAGTGAACTCCTTGTCTAAGA s galGal2.chr1 102137922 403 - 188239860 TACTTACTGAGAGGCAGGACGGTGATGGGGATGTTCTTTGGCCGTTTGCTCTCCTTGTCAATGAAGTCCCCAGTCACAGTCTTCTCCCGCTCAGTCACCCGGCAGTTGTACTTGCCGCTGTCCTCAAGGCGGAGGCGATAGATCTTCAGTACAAAAACGTTATCGCTTTCTTTGGCTACCTTGAGCTGGCCCAGAGCCTCACGCTGGGCAAATTCGTTGTTAAGCACTGGCACAGCGTTTGGCCCCAGACTGGCGATGAGAGAGCTGTTGAAGGCCCAGGAGATGGAGAAGTAGCGGTCAGGGATGTTCTGTGCCTCCAGGATGCACCGAAACTCCACCGGCTCGCCCACAATGTACATCCGCTTCTCCGTCTCCAGCCTGACGCTGAACTCCTTATCTGGGG s fr1.chrUn 163516198 400 - 349519338 TACTCACTGAGTGGTTGGACGGTGATCTGGACATTGCGCGACCTCTTGCTG---CGGTCAATGAAGTCTCCCGTCGGCGTTTTCTCTCTCTCTGTCACGCGACAGATATACTTTCCAGCATCTTTGGAGTGGAGATGCTGCAGTTTCAGCAGGTGCACGTTGGTGCTCTCTTTACGCACCGTCATGTGTCCGGCTGCCTCTCGGGCGACATACTCGGGGCCCAGGATTGGCACGGCACTGGGGCCCACCACGGCCACCGGCGAGCTGCTGAAGACCCACGACACCGAAAAAAACCGCTCTGGAACATTCTGAGCCTCGATGGTGCAGCGAAGCTCCAGCGGCTCACCGGCCGTGAAGGACCGTCGCTCCGTGCTGACCTGGATGCTGAAGTCTCGATCTGAGG s danRer1.chr10 18834725 400 - 25436222 TACTCACTGAGCGGGGTTACAGTGATCTGAACGTTGCGGGAGCGTTTGCTG---CGGTCGATGAAATCTCCAGTGAGGGTCTTTTCCCGCTCTGTCACTCTGCAGATGTATTTCCCAGAATCCTCAGGCAGTAGGCGCTGTAGCTTGAGGAGGTGGACAGATGGACTTTCTTTGCGCACAGTCAGGAGGCCGGCAGCTTCCCGGTCCACGTAGTTGGGTCCCAGAGCAGGCACAGCGCTGGGCCCGATCACGGCTACGGGTGAGCTGCTGAAGACCCACGACACCGAGAAGAAGCGCTCTGGAACATTTTGAGCGTCAATGGTGCAGCGGAGCTCCAGCGGCTCACCAGCCGTGTAGGCCCGGCGATCTGTGGTCACCTGGATGCTGAAGTCCCGATCTGGGA a score=0.0 s hg17.chr13_random 130599 11 + 186858 GAACAATTAAG a score=-166.0 s hg17.chr13_random 130599 2 + 186858 GA s panTro1.chr1 116698747 2 + 229575298 GA s mm5.chr3 59208247 2 - 160575607 AC s rn3.chr2 61760612 2 - 258222147 AC s canFam1.chr17 56852307 2 + 66886099 GA s galGal2.chr1 102138325 2 - 188239860 AG s fr1.chrUn 163516598 2 - 349519338 AA a score=1365.0 s hg17.chr13_random 130601 1 + 186858 A s panTro1.chr1 116698749 1 + 229575298 A s mm5.chr3 59208249 1 - 160575607 A s rn3.chr2 61760614 1 - 258222147 A s canFam1.chr17 56852309 1 + 66886099 A s galGal2.chr1 102138327 1 - 188239860 A a score=0.0 s hg17.chr13_random 130601 2 + 186858 AC a score=1000.0 s hg17.chr13_random 130602 1 + 186858 C s panTro1.chr1 116698750 1 + 229575298 C s mm5.chr3 59208250 1 - 160575607 C s rn3.chr2 61760615 1 - 258222147 C s canFam1.chr17 56852310 1 + 66886099 C a score=-1633.0 s hg17.chr13_random 130603 7 + 186858 AATTAAG s panTro1.chr1 116698751 7 + 229575298 AATTAAG s mm5.chr3 59208251 4 - 160575607 A---AAC s rn3.chr2 61760616 4 - 258222147 A---AAC s canFam1.chr17 56852311 7 + 66886099 ATATGAC s fr1.chrUn 163516600 7 - 349519338 GATAAAC a score=13732.0 s hg17.chr13_random 130610 49 + 186858 AAAAGAGAC--------ACATCCTGGGTGAATGAGGGCCCCAGCCAACTAAACCACA s panTro1.chr1 116698758 49 + 229575298 AAAAGAGAC--------ACATCCTGGGTGAATGAGGGCCCCAGCCAACTAAACCACA s mm5.chr3 59208255 49 - 160575607 AAACTGGAT--------GCATTCTGGGCAAATAAGAGCTGCAACCTACCAAACTGCT s rn3.chr2 61760620 48 - 258222147 AAACT-GAT--------GCATTCTGGGCAAATAAGAGCTGCAGCCTACCAAACTGCT s canFam1.chr17 56852318 48 + 66886099 AAAACGGAT--------GCATTCTGGGTGAACCTGGGCCCCGGTTACCCCAACT-CA s fr1.chrUn 163516607 43 - 349519338 AAAAGAAATCTGGTCAAATATTTGCAATGAATGAAGG------------AAAT--CT s danRer1.chr10 18835125 47 - 25436222 AAGAAAGAC--------AAGTAAAGGATGAGTTA--GTCATGATAAAATAATCCACA a score=24671.0 s hg17.chr13_random 130659 211 + 186858 TTAGCACATTCCCACTATCCTTCCT---------CTTC---TT---TACAATAC--TAATTGCAGGGAGT-ACC---ACAACACTTGG--CTTGAGAGTAAAATCC--AACTCAGACCCAGGTTATCTGAGGTCCAGA---GAAACGCCTGAATATCA---CAGACAG-AATTCAATACTACTTCAGCCCAGACGGTCTA---------AGCA----AACTGTTACCCCAGTTAAGACCAATGGGGCTCAGTCTGA s panTro1.chr1 116698807 211 + 229575298 TTAGCACATTCCCACTATCCTTCCT---------CTTC---TT---TACAATAC--TAATTGCGGGGAGG-ACC---ACAGCACTTGG--CTTGA-AGTAAAATCC--AACTCAGACCCAGGTTATCTGAGGTCCAGA---GAAACACCTGAATATCA---CAGACAGAAATTCAAAACTACTTCAGCCCAGACGGTCTA---------AGCA----AACTGTTACCCCAGTTAAGACCAATGGGGCTCAGTCTGA s mm5.chr3 59208304 196 - 160575607 TCAGGAAA-TCCTATTCCCCTGACC---------TTCC---TT-------ACAC--TAACTACAGTGATG-ACT----CCGTATTCAT--CTTGA-GAGAAAATCC--AACTTTAGCCAAGGATATCTGAGTCCAAGC---CAACCCATTAAATACCA---------------TAATACCAGCCAAATCCAGGCTGTCTATTTTTGCTTAGCACTCGCACTGTT----------AGACCAACAGGGCTCTGTCAGG s rn3.chr2 61760668 193 - 258222147 TCAGGAAA-TCCTACTCCCCTGACC---------TTCA---TG-------GCAC--TAACCACAGAGAAG-ACT----CGGTACTCAT--CCTAA-GAGAAAATCC--AACTCTAGCCAAGGATATCTGAGA-CCAGG---CAAACCCTTAAATACCA---------------GAATCCCAGCCAAATCCAGGCAGTTTATTTTTGCTTAGCATT--CACACTT----------AGACCAATAGGGTTCTGTCAGG s canFam1.chr17 56852366 203 + 66886099 TCAGCAAACTCCCACCACCCAGGCC---------TTCTGTGTT-------GTGC--TAACTCCGGGAAGGCACC---TCCCTGCTTGT--CTTGGGGGAAAAATCC--AACCC--------GTGATCTGAGGACCAGA---GATACTCCTGAAGGTCA---CAGAGCA-AACTCAGAGGTAGCTTGGCCCACACAGTCTA---------AGGG----GCTTGTCATCCCGGTTGAGACCAGTGGGGCTCTATTTGC s fr1.chrUn 163516650 231 - 349519338 AAAACATATTGCTGGTTTGTAAGCAAAGAAAATGTTCC---TTGAATGCAGCACCATAACTGAGTGGTAT-TCCAAAAGGAGATTTGTTCTTTAA-ATGAGGATCTAAAACCGGAGTAATGTCTAAATGTGGACCGCAGTTGAAACGCCTGGAAAGCAGCGCTGCCAG-GGTTTATTTATACACACACCAAGATACT-GA---------ACCA----GTTTGGT-----GATTAAGACAAAAAGTGAGAAATTCAA a score=1422.0 s hg17.chr13_random 130870 2 + 186858 AG s panTro1.chr1 116699018 2 + 229575298 AG s rn3.chr2 61760861 2 - 258222147 AG s canFam1.chr17 56852569 2 + 66886099 AG s fr1.chrUn 163516881 2 - 349519338 GG a score=19737.0 s hg17.chr13_random 130872 159 + 186858 CTTTAGAT---GTCTTGCATGAAACCCCC--AGGTCAGTGAGAAGCTACTA-ATATCACTCAAA--------TGGTGGATTACAAA----TATCTAGCCTTGATATATGCAC--CCAGAACTCTATTTAAGGA-ACAGCCTTATAAACATTTTCAGCAGATACTGTAAGACTTACCCCAC s panTro1.chr1 116699020 159 + 229575298 CTTTAGAT---GTCTTGCATGAGACCCCC--AGGTCAGTGAGAAGCTACTA-ATATCACTCAAA--------TGGTGGATTACAAA----TATCTAGCCTTGATATATGCAC--CCAGAACTCTATTTAAGCA-ACAGCATTATAAACATTTTCAGCAGATATTGTAAGACTTACCCCAC s canFam1.chr17 56852571 158 + 66886099 CCTACGAT---GCCCTGGATTAGACCCTCAGAGGTCAGTGAGGAATATCTC-ATATGAC---------------ATCACTTACCCAGGTCTATCTAGCCTTGACCTGTACTC--CCAGAAGTCCATTTAAGCA-ACCTAACTACAAACATTTTCTGCAGATGTTGTAGGACCCAGCCCAC s fr1.chrUn 163516883 170 - 349519338 ----AGGTGGAGTCGGGAAAAGCAAAAAC--AGAGGGGTTAAAGGTCACCATACATCACTCTGGCAAGATGCTGATCTTTCAGAGA----GCTTTGCCCTTCCTGGTTTCACCTCTGGAATAATAAAAAAACACACCTAATTAAAATTCTTTTCAGCAGTCAAAAGGAGCTCTGCTCCAC a score=39099.0 s hg17.chr13_random 131031 418 + 186858 TGAGGTCTGTGGG-AAAAAATTACAGAGTGGCCTAGGTGCTGG-CCCAATCCTAACAAATGCTCAAA-----------GATTAAAATTCCCTCTCTACCCCCCGCCATGTGAATACTAGAAATAAGTTGTAGCCATGACAAAACCCTAACAGAATTACATAGAAAAAATAAAAACTAATGTCTGTTCACTAGTTTACCACCTGTCAGATCAAATCTTTAGGCAGATTTCAATGGAAGTAGGTACTTTCCCACTGAAGTACCTACTAAGTACTTACTTTAGTA--------------------GGAAAGTACCTACTTCAGTGGGAAAGTACCTACTAAGTACTCACGCCTGGTTAAAC------------------------------CTTAGTAGGTACTTTAGTAGGAAAGTACCTACTTCTGCTGAAAGCCAGACAGACTCTGAAATGATTACTAAAACCAAGCAGCCTCCAAAGAGC s panTro1.chr1 116699179 469 + 229575298 TGAGGTCTGTGGGAAAAAAATTACAGAGTGGCCTAGGTGCTGG-CCCAATCCTAACAAATGCTCAAA-----------GATTAAAATTCCCTCTCTACCCCCCACCATGTGAATACTAGAAATAAGATGTAGCTATGACAAAACCCTAACAGAATTACATAGAAAAAATAAAAACTAATGTCTGTTCACTAGTTTACCACCTGTCAGATCAAATCTTTAGGCAGATTTCAATGGAAGTAGGTACTTTCCCACTGAAGTACCTACTAAGTACTTACTTTAGTAGGAAAGTACCTACTTTAGTGGGAAAGTACCTACTTTAGTGGGAAAGTACCTACTAAGTACTCACGCCTGGTTAAACCTTAGTAGGTACTTTCCCACTTAGTAAGTACTTAGTAGGTACTTTAGTAGGAAAGTACCTACTTCCGCTGAAAGCCAGACAGCCTCTGAAATGATTACTAAACCCAAGCAGCCTCCAAAGAGC s canFam1.chr17 56852729 275 + 66886099 TAAGATGTGAGAG-ACCAAGTTATATTGTGGCCTAAGTGCTGACCCCACTCCTAGTAAATACTCAAAAACATACATATGATTGAAAT----------------ACATTGTGCACACTGGAATTAAGACACAGGGAAGAC-AATCTTTGAGAAAATTCTGCAGGCAATAGGAAAACAAATGTCCCTCTGCTGG-TCACCACCTGTCAGAACAAATC---------------------------------------------------------------------------------------------------------TGGGGAAGGA-------------------TGG---------------------------------------------------AGAGGGAAAATATA-ACTTCTACTGAAAGCC---CAGGACCTCAA--------TGAACCCAGGCACTTTTTGGAGAGC a score=16629.0 s hg17.chr13_random 131449 181 + 186858 TAGGTGttttttaaatttttatttatttacttatttattgtaacaaggtctcgctctgttgcccaggctggagtgtagtggcatgatcatggctcactgcagcctcgacttcccaggctccagccatcctcccacctcagcctccggagtagccaccatatctggctaatttttgtTGAGT s panTro1.chr1 116699648 181 + 229575298 TAGGTGttttttaaatttttatttatttacttatttattgtgacagggtctcgctctgttgcccaggctggagtgtagtggcatgatcatggctcactgcagccttgacttcccaggctccagccatcctcccacctcagcctccggagtagcCACCATATCTGGCAAATTTTTGTTGAGT a score=16067.0 s hg17.chr13_random 131630 124 + 186858 TGGGTGTTTAACCAGGCATGAGGGGGTGAC--CAAAGAGGGGCTCATCACCACTAACAGCATCACCACAACCTGTGTACCAGTGTACAGTGGCTATTAATCTCATTAGACAGCTATCGTATCTCAT----- s panTro1.chr1 116699829 126 + 229575298 TGGGTGTTTAACCAGGCATGAGGGGGTGACCACAAAGAGGGGCTCATCACCACTAACAGCATCACCACAACCTGTGTACCAGTGTACAGTGGCTATTAATCTCATTAGACAGCTATCGTATCTCAT----- s canFam1.chr17 56853004 95 + 66886099 TGGCCGTCTAACCAAGAATGAGAGGATGGC--CAGAGAAGGGCTCATTCCCACTAACAGTGTCCC---------------------------------ACCTGGTGAGACAGTTACCACCTC-CATGACAC a score=11656.0 s hg17.chr13_random 131754 44 + 186858 AGGCACCCAGGGCAGAAGTCAGGGGGAAGAAAATGGAGTTAAGG s panTro1.chr1 116699955 44 + 229575298 AGGCACCCAGGGCAGAAGTCAGGGAGAAGAAAACGGAGTTAAGG s mm5.chr3 59208500 43 - 160575607 AGGCACTCACAGTGGAAGTGAGGAACAGGAAGA-GGAATTAAGA s canFam1.chr17 56853099 43 + 66886099 AGGTATCCCTGGCACAAGTGGGGGCTAAGAAGA-AGGATGAAGG a score=122456.0 s hg17.chr13_random 131798 426 + 186858 -------------------------------GTTAGAGACTGGAGC----TGTGACCACTGCCCAGTTCTAGCTCTGTTCCTCTAAAAAGAACACTGAGGTG----GAAAAAATCTCATGGCAGAGATGTTTGAATTCCATGTAGATTCATTAGCTCTGACCTTGTCTGCCTTCCCTAGACTGGCATGTCTAGTCTTTC-CCACTATCT-----GCAAGATCTTG--CCCATTCAT--CCC---GTCCTAGGCACTCTTCAAGCAGACGAGGTTTCTGTTTCCCCGAGAAAA-----CATAAGAGTCACGCATGAGCAGCATC--CACATTCCTCTTTTCCAGCCCCAGCTCAGCTTTACCCCTCCCACTCCTCAGGC----TCTCCAGCCCCTCCCTGCCGATATAGGCCAGTGACCTGCTGCAAACACCTCTTCTTT----CCAGTGACCTAACTACTTCCTCTAGCAGCCAAACTTCCTGACAGGGAAAA s panTro1.chr1 116699999 425 + 229575298 -------------------------------GTTAGAGACTGGAGC----TGTGACCACTGCCCAGTTCTAGCTCTGTTCCTCTAAAAAGAACACTGAGGTG----GAAAAAATCTCATGGCAGAGATGTTTGAATTCCATGTAGATTCATTAGCTCTGACCTTGCCTGCCTTCCCTAGACTGGCATGTCTAGTCTTTC-CCACTATCT-----TCAAGATCTTG--CCCATTCAT--CCC---GTCCTAGGCACTCTTCAAGCAGACGAGGTTTCTGTTTCCCCGAGAAAA-----CGTAAGAGTCACGCATGAGCAGCATC--CACATTCCTCTTTTCCAGCCCCAGCTCAGCTTTACCCCTCCCGCTCCTCAGGC----TCTCCAGCCCCTCCCC-CTGATATAGGCCAGTGTCCTGCTGCAAACACCCCTTCTTT----CCAGTGACCTAACTACTTCCTCTAGCAGCCAAACTTCCTGACAGGGAAAA s mm5.chr3 59208574 436 - 160575607 -------------------------------GTGGGAGGCTCCAGC----TCCTAACTCCTTCCAGTTCTAGCTATGTTCCT-TGCAGAGAATATGGAGAGGAAAAAAAAAAATCACATCACAGTGGTGTGTGAACTTTCTTGACATTCACCAATCTCAACCACAACAGCCCTTCCTCTG-TGGCAATCCCAGGCTATCACTAACACCTTTGGATCCATGCCTCG--GCCATCCACAACCC---ATCCATCACACATTTCAAGCACGTAAGAGTAATCTTTTCCTGTGGAAAATGATCATGTGAGCCAAGCA-------------CGCACTTCTCCGTTCCAA-TACAGCTCAGCGTCTATCCTTTATCTCCTCATGCCTTTTCTTTATCTCCTCCAT-CCCACACAAGCTGGTCTCTTGAGCCAGATGTTTTTTTTTTCTTGCCAGTGAACTAGCTCCTCCCTGTATCACCCAAACTTCCTGACAGATCAAA s rn3.chr2 61760926 410 - 258222147 -------------------------------GTGGGAGGCTCTGGC----TCCTAGCTCCTTACAGTTCTAGCTATGTTCCT-TGCAGAGAAAGTGGACAGG-------AAAATCACATCACAGTGGTGTGTGAACTTTTTAGAGATTCATCAACCTCAACCACAACAGCCCTCCCTCTG-CAGCATTTCCAGGCTATCACTATCACCTTTGGATCCATACTCCT--GCCATCCCCAACCC---ATCCTTGGCACGCTTCAAGCA--CGAGAGTTCTCTTTTCCTGTGGAAATGGATCATGTGAGCCAAGAA-------------TGCACTCCTCCACTTTAA-TCCAGCTCAGCT-------------TCTACGAGTCTTTTCTTCACCTCCTCTGT-CCCACACAGGCCAGTCTCTTGAGCTAGCTGGTCATTTCTT---GCCAGTGACC-AGCTCCTCCTTGTATTACCCAAACTTCCTAACAGATCAAA s canFam1.chr17 56853142 457 + 66886099 TTTGGAGAAAACAGAACCACAGGGCCTTGGGGAGGAGGGCTGAAGCTGGGTCCCTCCTCCTCTCAGATCTAGCTGTGCCCCTCTAAGGAG----------GG-------GACATCACATTCCAGGTATGC-TGGACTTCTTGGATACTGGCTAGCTCTGACCTTGCCTGCCTTCCTTACACTGGCCTTTCTAAGCCTCCACCACTATCT-----TTAAGACCTTTGCCCCATTTTTGTTCCCTGATCTTATGTACCCTCTGAGCAGATAAAAGTTCTCTTTCCCTGAGAAAT-----CACAGGAATCATGAGTACACTGCTCCAACATCCCCCTCTTCCCCAACCCAAGCTTGGCTTTGTATCTCCTGTTCTTTGGGC----TCTCCACCTTCTCTCCTCCCACATGGGCTAGCATCTTGCTCCAGGTACTCATCTTCT----TTGGCAAATTAGCTCCTCCCTTTGTTGCCCCAAATTCCCAAGAAAGCAAA a score=4449.0 s hg17.chr13_random 132224 35 + 186858 CCACGTCATCAA----CTCCAGGGCCTCCCCTCCAATGA s panTro1.chr1 116700424 32 + 229575298 CCACG---TCAA----CTCTAGGGCCTCCCCTCCAATGA s canFam1.chr17 56853599 37 + 66886099 CTACAC--TCAAGGACGTCCAAGGGCTCACCTCCAATGA a score=16949.0 s hg17.chr13_random 132259 55 + 186858 AGTAGCTGCTGTCACAGCTTCCAGCTCCCAAGAGACCAGTCTTAAGAGGCATGGA s panTro1.chr1 116700456 55 + 229575298 AGTAGCTGCCGTCACAGCTTCCAGCTCCCAAGAGACCAGTCTTAAGAGGCATGGA s rn3.chr12 7903296 55 - 46649226 AGTACCTGGGTCCACAGCCTCCAGCTCCCAAGAGACCAGCTTTAGCAGGGATGAA s canFam1.chr17 56853636 55 + 66886099 CACGGCTGCTGCCTCAGCTTTCCCTCCCCCAAAGACCAGGCCTACAAGGCATGGC a score=127875.0 s hg17.chr13_random 132314 812 + 186858 TTGAAGGAAGCACATTTCACTCTGCCACCATCTGCCTGGATGAACACACCCATATGGGAC-AGTCCCCATGTTATCTGCTGGATATTATCTCTCATGTCAACCCAATTAGTCATTTATAACCCGACATCAATGACA------GAAAAGCACTCCTTCCACATAAACACCACTGGAGCTGTG-CAAGGGGTACCCTAGACCTCAGACCTTTCCATTGCTCCAG-GTTAGCCTGGCTGTAACTCTGGCTTTCTTCTTTCAGAGGCCAAAGGATCTGCTCATCTCAGGGGAATCCCCCCATGCCTTGGTGACACCTTCATGTTCCCAGGTTGAAGACACAAGATTTAC------CCACATCACCCCCGTT------TCTGCCCTTGGTTATGCCCAGTCAATTACATCTCTAGAAACTGACCTGTGCTTTTTCCAATA---CCCCTTCCACTTCATCTCACTGAAATTAGG--------------------CTTCACTGACTTAGCAAATGTCATGAATGATCC-ACCCTACC------CCTAC--CCCTACCCCCATCCTAACCAAAGGCTTTCCTCAAGCAGGTTGAGGCCTCTGAGCCTGCTCT---------------ATGATCCCTTCTCTCCTGC---TCTTCTTGCTGGCCTGCCCACTCTGTTCCACTCTCTCACCTGCTTCTCTGGTCACCCCTTACTGCTGCTGTTCTCCCAGGCCCTTTCCCATTTTGACCCCATGAGCTCTTCCAGGGCCCTGATCACTCTCAGGCTCGGTCTCTGAGCCCCAGACCCCTATGTCTGAGGACCCACTGGGTGTTTCGCACACTGAGCATCTCTATCAGAGTCTATCTGATGGATGGGCTCTTTCATTAGAATTT s panTro1.chr1 116700511 819 + 229575298 TTGAAGGAAGCACATTTCACTCTGCCACCATCTGCCTGGATGAACACACCCATATGGGACTAGTCCCCGTGTTATCTGCTGGATATTATCTCTCACGTCAACCCAATTAGTCATTTATAACCCGACATCAATGACA------GAAAAGCACTCCTTCCACATAAACACCACTGGAGCTGTG-CAAGGGGTACCCTAGACCTCAGACCTTTCCATTGCTCCAG-GTAAGCCTGGCTGTAACTCTGGCTTTCTTCTTTCAGCGGCCAAAGACTCTGCTCATCTCAGGGGAGTCCTCCCATGCCTTGGTGACACCTTCATGTTCCCAGGTTGAAGACACAAGATTTAC------CCACATCACACCCGTT------TCTGCCCTTGGTTATGCCCAGTCAATTACATCTCTAGAAACTGACCTGTGCTTTTTCCAATA---CCCCTTCCACTTCATCTCACTGAAATTAGG--------------------CTTCGCTGACTTAGCAAATGTCACGAATGATCCAACCTTACC------CCTACTACCCTACCCCCATCCTAACCAAAGGCTTTCCTCAAGCAGGTTGAGGCTTCTGAGCCTGCTCT---------------ATGATCCCTTCTCTCCTGCTCTTCTTCTTGCTGGCCTGCCCACTCTGTTCCACTCTCTCACCTGCTTCTCTGGTCACCTCTTACTGCTGCTGTTCTCCCAGGCCCTTTCCCATTTTTACCCCATGGGCTCTTCCAGGGCCCTGATCACTCTCAGGCTCGGTCTCTGAGCCCCAGACCCCTATGTCTGAGGACCCACTGGGTGTTTCACATACTGAGCATCTCTATCAGAGTCTGTCTGATGGATGGGCTCTTTCATTAGAATTT s canFam1.chr17 56853691 831 + 66886099 CTAAAAGAAGCAGGTTTTGTTCAGACACCCCCTGCCCAGGTGAACATACCTGTGGGGATC-TGTGCCCAAACTATCTGCTGGAGAGTGGCTCTGTGGCAAGCCCAATTACTCA-----------ATATCAATGATAAGAAAGGAAAAGCATCCTGTTCACATAAATGGCACTGAAGACATGCCAACAGGTTCCCGAGACCTCAGAACTGTCCATTTTCTCAGAGTTAGACTGGCTATAGCTGTGGCTTTTGACTTGTGGCAGCCAGAAGCTCTACTGCTCTCCTGGGACAATCCCCATGGCTTGGTAAAGCCTTCACATTCCCATGTTGAAGACACAAGATTGACAGCGTACCACCTCCTCCCTGTGCAGCAATTTGTCCTTGGTGATACCCCTTCAATTAAACCTCTAGAAATTGGTTTATGCTTCTTCCCATGTACTCCCCCACTCTTCAACTCATTGAAGTCTGGCTTCTGGTCCTTCTTCCACACTTCATTGACTTAACAAATGTCACCAGTGATCC--CCCTAACACACCGCCCTC--CACCACCACCAGTCACACCAAAGGCTTTTCTCAAGCAGGATTC--CATCTGGACCCACTCTCCTCTTTTAGGTTCCATGACACCTCCCTTCCCACTTTTCCTCTTGCTTGACTGCCCCCTCAGTTTCTCACTGAGATCTGCTCCTCTG---ACCTCTTACTGCTGCTTTTCTCTTGTGCCTTTTCCAATTACTACCCCATGGGCTTTCCCTGGGCCCTCACCTCTCCCAGG---------TGGGGCATGGAC----------------------AGTGCTTTGCCTACTGAACATCTCTGAAGGATTCTGCATGCAGGATGGACTCCTTAACTAAAACTT a score=8674.0 s hg17.chr13_random 133126 41 + 186858 ACAAAAAC-----AAAAGGCAGCCAATGCTGCCACAAATGCA-------------------AAGG s panTro1.chr1 116701330 41 + 229575298 ACAAAAAC-----AAAAGGCAGCCAATGCTGCCACAAATGCA-------------------AAGG s canFam1.chr17 56854522 65 + 66886099 ACAAAAACAGAAGAAAAGACAACCAGGGTTGCCACCAATGGGGAAGCAGAAGCTTTTAAGCAGGA s danRer1.chr10 18838672 41 - 25436222 ACAAAAAC-----TGAAAGCAGATGATGGTACTACAAAAACA-------------------AAAG a score=3071.0 s hg17.chr13_random 133167 23 + 186858 TCCCGCATGTCCTCATTATTGTT s panTro1.chr1 116701371 23 + 229575298 TCACGCATGTCCTCATTATTGTT s canFam1.chr17 56854587 23 + 66886099 CTCTGCATGCTCTCAATACCCGT a score=8116.0 s hg17.chr13_random 133190 60 + 186858 ----------CCTTCCCTCCCACAGTTCAAGGAACCCCCAGAGCCCCAGCCCCAGCCCCTGGGGTTCTAG s panTro1.chr1 116701394 60 + 229575298 ----------CCTTCCCTCCCACAGTTCAAGGAACCCCCAGAGCCCCAGCCCCAGCCCCTGGGCTTCTAG s mm5.chr3 59209011 41 - 160575607 ----------CCCTCTCAGCCAGGGGTCAGGGAACCACCGATGAC-------------------TTCCAA s canFam1.chr17 56854610 63 + 66886099 CTTTCCCCCTCCCTCCTTCCCCTGATTCAAGGATCACCTAGAGTGCCAGCCTCA------GGGTTCCCA- a score=9895.0 s hg17.chr13_random 133250 77 + 186858 ACAGTTGGACCCCTCCTTCCATTGT-GCTCTTTATTCTTTCGCCTCTGGCACCCA--CTGACC------T----------------AGCCTTGGCTCTTATT s panTro1.chr1 116701454 77 + 229575298 ACAGTTGGACCCCTCCTTCCATTGT-GCTCTTTATTCTTTCGCCTCTGGCACCCA--CTGACC------T----------------AGCCTTGGCTCTTATT s mm5.chr3 59209052 87 - 160575607 ACAGCTGGCCTCCTCCATC-------ACTCTCTCTCCTTCTGCCTCTGGCACCCAGTCTCACC------TCCCAGACCACCACCACAGCCTGG--CCAAATG s rn3.chr2 61761363 86 - 258222147 ACAGCTGGCTTCCTCTATCA------CCTCTCTCTCCTTCTGTCTCTGGCACCAGATCTCATCTCCCAGT-------CACCACCACAGCCTGG---CCAATG s canFam1.chr17 56854673 73 + 66886099 GTAGGTGGATT-CTCATTCCATGATGACTGCCTGCTTTCCAGGCACTGCTGCCGA--CCCAGC----AGT----------------GGCCTTT--TCT---- a score=423703.0 s hg17.chr13_random 133327 1252 + 186858 AGCTCTTTTCTACCTGGTCTCTTGGCTTCAGACTCAACAGATTTAATCAACCTCCAGGTGGCCTCC------------ATAGGTTTTTCTTTCTGAAAC-CCTGATCTGATTGTCTTACTCCCTGCTTAAAAATCTCTA---CCTCCTCTCCAACTGTCTGCAGCAGAGGTCTTCAAACTTTATTAAGAAGAGGACAAAGGAAGTGGACT---TTTTATTCATATAAAATCTTCTGCTGCCCAACA-----------TAGTTGAAGCAAG-GGGGGACCACCCAGGCCCTTGCATGCCTTCTCCCTGCACTCCTGGGTGTGCACAATGTGCACATGAACACCAACACA------------------CACCCATGTCTAACCTCCTAGG--CACCTTTGAGGGGCTTCCAGGGTTCCAAGAACA---GCTTAAAAACTCTTGGCCCACAGAGTCAAGCCCTGGCTCTATATCACTGCAT-TTGGGGCTTCGGGCTCCCTTTCCTCTC-------ATCACACACATCTGGAACTGAACATCTGGAACTAGTCATACTTGACTCCTTTCTGCTTGCCA-----AACATATCAAACACTTTTGCACTTTTATGCTTCTTCTC---CTGACTCCTCAAGCTTCCAGACTCAGTTCAAGTCAAGAAACTTATTGGTG--TTCCTGGATTTG--TCTTAT---CAACCATCCCATTCAGAGAAAACT--ATGGTTGCAAGAACACTTCCTATTTC-----CGGTAT-TCCCAGAGGACTCTATACA-AATGCTATCAATGCACTTAGCACATTTTACTTGTCCATTGGTTCTCAGGTCTGCCTAAGTGCAGGGACCAGT-GCTAGTCATCTTTGAAGCCCTTAATGCCTATCACCATCACACCTTCAATGCTGTGGAGACTGGCTACATGTTTACTGAAATAAACTGAGAA-GGGTAG------AGTTGGAGATGCAACTACTGAACCTAAACAGCACAGGAATGCAGAGTGAAGTCATCAAC------TTTTTTTTCACTT-------AGTTTTCCTTTTGATGGCTTAGTCTAGATACATTTTCAGGGTAAATTCAAAAAGTTCTAATTCCAAATTGGTAAGATTAAAATAAAGAAGATTAACTGATGCAACCTAATTTAAAAGCATTAAGACTC-AAAATTTGGCCCAAA--TTTTTGAAGTTGATCTCAAAACTTTCCAGGAAGGGAAAGGATAAATATAAAATAAAGCCCCTTGGATAGATTTTTTAATACTGAAAAATCCAGAAGCTGCTAAATGCCCTA-------CAGAGCAGATAAAGTGCCCCCTATCCC-----TACCAACCCCTATGGTAAAAGATTTCACATCCATTA s panTro1.chr1 116701531 1261 + 229575298 AGCTCTTTTCTACCTGGTCTCTTGGCTTCAGACTCAACGGATTTAATCAACCTCCAGGTGGCCTCC------------ATAGGTTTTTCTTTCTGAAAC-CCTGATCTGATTGTCTTACTCCCTGCTTAAAAATCTCTA---CCTCCTCTCCAACTGTCTGCAGCAGAGGTCTTCAAACTTTATTAAGAAGAGGACAAAGGAAGGGGACT---TTTTATTCATATAAAATCTTCTGCTGCCCAACA-----------TAGTTGAAGCAAG-GGGGGACCACACAGGCCCTCGCATGCCTTCTTCCTGCACTCCTGGGTATGCAC-ACGTGCACATGAACACCAACACA------------------CACCCATGTCTAACCTCCTAGG--CACCTTTGAGGGGCTTCCAGGGTTCCAAGAACA---GCTTGAAAACTCTTGGCCCACAGAGTCAAGCCCCGGCTCTATATCACTGCAT-TTGGGGCTTCGGGCTCCCTTTCCTCTC-------ATCACACACATCTGGAACTCAACATCTGGAACTAGTCATACTTGACTCCTTTCTGCTTGCCA-----AACATATCAAACACTTTTGCACTTTTATGCTTCTTCTCCTGCTGACTCCTCAAGCTTCCAGACTCAGTTCAAGTCAAGAAACTTATTGGTGTTTTCCTGGATTTGATTCTTATTACCAACCATCCCATTCAGAGAAAACT--ATGGTTGCAAGAACACTTCCTATTTC-----CGGTAT-TCCCAGAGCACTCTATACA-AATGCTATCAATGCACTTAGCACATTTTACTTGTCCATTGGTTCTCAGGTCTGCCTAAGTGCAGGGACCAGT-GCTAGTCATCTTTGAAGCCCTTAATGCCTATCACCATCACACCTTCAATGCTGTGGAGACTGGATACATGTTTACTGAAATAAACTGAGAA-GGGTAG------AGTTGGAGATGCAACTGCTGAACCTAAACAGCACAGGAATGCAGAGTGAAGTCATCAAC------TTTTTTTTCACTT-------AGTTTTCCTTTTGATGGCTTAGTCTAGATACATTTTCAGGGTAAATTCAAAAAGTTCTAATTCCAAATTGGTAAGATTAAAATAAAGAAGATGCACTGATGCAACCTAATTTAAAAGCATTAAGACTC-AAAATTTGGCCCAAA--TTTTTGAAGTTGATCTTAAAACTATCCAGGAAGGGAAAGGATAAATATAAAATAAAGCCCCTTGGATAGATTTTTTAATGCTGAAAAATCCAGAAGCTGCTAAATGTCCTA-------CAGAGCAGATAAAGTGCTCCCTATCCC-----TACCAACCCCTATGGTAAAAGATTTCACATCCATTA s mm5.chr3 59209139 1199 - 160575607 AGTTCTTTACAACCCTTTCTCTTGACTGCTCACCCAACCTGTCTCACCAACTTCCACATGTCCCCCTCCTCCACATCTCTGAGCTCTTCCTCCTAAATTACCCAATCAGGTGG--CTAATCCCTGACTAAAGGG---------ATTCCCTCCAG-TGTTTATA---------TTGAAAGTTCTTCAGGA--GGTATAAAGAGAGGGGCCT-CCTTTACTTCATGTAAAA-CTTTCATTGCTCAATAAGGCAACTATCTGGTTGAAGCAAG-AGGAG--CTCACAGGTTCTCGCCCTCTTCCCACTGGTACACACACACACACAC-ACACACACACACACACACACACACGAGTGAGCAAGTGCACTCACCCACGTGT-ACCTCTCAGGCACACCCCCACGGACCTCCTAAAGCGCCAAGAAGAATGGCTTGGCGACTCCTGGTCCACAGAGTCCATCCCATGTTCGACCTCCCAGC---TCCCAGCTTCAGGGGCCCTACTTTCTC------TACTGCTCA-ACCAAGAACCCACCAT------CCAGTC--ACGTGACTTTCTTATGCCCGAC------AGCATGT------CTGCCGCCCTTCCCTACTTCCTGTG--GCTGTCTGCTCAACCTT---GACACAGCTCAAGCCTACTGAGGAACTAGAA--TTCCTAGATCTG--TTGTAA---TAGCCATCTTATCCAGAGAAAAC---ATAG-AGCAAAAACA------GCCTT-----CAGTAT-TCACACA-------------------------GCACTTAGCAC------------------------------CTTAAGTACACAGACCGAT-GTCGTGCATCTTGGCATCCCTGAATGCCTCGCAC---GACACCTTCAGTGCTGTAAAGACTA-----ATGTCTATTAAAATAAACATGAAG-AAACAGACTCCAAGGCGGAGTTGCAACTCCTCAGTTTGA-----ACTGGAACACACAGTGGAGCTATCAAC-------ATTTTTTCACTTCCATTAGAGTTTTCCTTTCT-TAGCTCAGTCTGGATACATTTACAGGGCAAATTC-AAATGTCCTAATTCCAAATTGGTAAGATTAAAATAAAGAAGATTAGCTGATGCAACCTAATTTAAAAGCATTAAGACTG-GAAATTAGGCCCAGACTTTTTTGACACTGATCTTAAAACCAACCAGTAAGGAAACCGATAAACAGGAACTAAAGCCTCTTGGGTAAATTTCTTAATATTAGAAGATTCAGAAGACAGTAAGAGCTCTGAGTCC-TAAGTGTGGATCAAGTGTGCCCTCTCACCAGGATACAATCTTCTTTTGC------TCTCACATCCATTA s rn3.chr2 61761449 1185 - 258222147 AGTTCTTTACAACCCTGTCTCTTGACTTCACACCCAACCCTTGTTACCAACCTCCACATGTCCTCTTCCCCTACATCTCTGAGCTCTTCCTCCTAAATTACCCAACCAGGGGG--TTAATCCCTGACTAAAAATCTCT-----AGCCTCTGCAG-TGTGCATA---------TTGAAAGTTCATCAGGA--GGTGTAAGGAGAGGGGGTCTCCTTTATTTCATATAAAA-CTTTTACTGCTCAATAGGGCAAATATCTGGTTGAAGCAAG-AGAGGAACTCACAGGTTCTTGCCCTCTTCCCACCGGTCCT----------CAC-ACGTGCATGTGAGCAAGGGCACT------------------CAGCCAACCAGCATCTCTCAGG--CACTCCCACAGACCTCCTAAAGCTCTCAGAAGAATGGCTTGACAATTCCTGGTCCACAGAGTCCAGCCCATGCTCTACCTCACAGC---TCACAGCTGCAGGTGACCTTCTTACTC------TACTGCTCC-ATCTAGAACGCAACAT------CCAATC--ACATGGCTTTCTTCTGCCTGACAGCTACGGAATGT------CTGATGCTCTTCCCCACTTCTGGCA--TCTGTCTGCTCAACCTT---GGCACAGCTCAAGTCATCTGAGGAACTAGAA--TTCCTAGGTTTG--CTGTAA---TAAACATCTTATCCAGAGCAAAC---ATAG-AGCAAAATCA------GCCTT-----CAGTAT-TCACGCA-------------------------GCACTTAGCAC------------------------------CTGAAGTGCACTGAGCGAT-GTCATGTATCTTGGCATCCC-GAATGCCTCGCAC---AACACCTTCAGCACTGTGAAGACTA-----ATGTCTATTAAAATAAACATGAAG-AAACAGACTCGAAGGTGGGGTTGTAACTCCTTAGTCTGA-----ATTAGAACACACAGTGAAGTTAGCAACA----TTTTTTTTTAATTTCCATTAAAATTTCCCTTCCT-TGGCTCAGTCTGGATACATTTACAGGGCAAATTCAAAATGTCCTAATTCCAAATTGGTAAGATTAAAATAAAGAAGATTAGCTGATGCAACCTAATTTAAAAGCATTAAGACTG-GAAATTAGGCCCAGACTTTCTTGACACTGATCTTAAAACCAACCAGTAAGGAACATGATAAACAGGAGCTAAAGCCTTTTGGGTAAATTTCTTAATATTAGAAGATTCAGAAGCCAGGAAGAGCTCTGAGTCC-TAAGTGTAGATCGAGTGTGCCCTCTCACCAGGATCCAACCTCCTTTCC-------TCTCACATCCATTA s canFam1.chr17 56854956 1255 + 66886099 AGCTGTCTCCTACCTGGTCTCTCCACAGCAGGATCAACCTGTTTAATCAACTTCCAGCTGGCATCC------------GTGGTCTCTCCCTTCTAGCAC-CCAGATCTCATTGTGTCACTCCTTGCTTTAA-ATCTCTACTTCCCCCCCTTCAAGTGTCTGCAGCAGTGATTTTCAAACATTCTTTGGAAGGGGCAGAGGAAAGGGCACT-----TTCTTCATACAGAATCTTTTGCTGCCCAGTACAGAAAACATTTGGTTGAGGCAAGCAGGAGAACACTGTGGCCCTCACACATCTCCCTCCAGCACCCCCTGGTGTGCAC-ATGTGCACATGAACATGCCCACA-------------------TCCCATGTGTAGCCTGGCAGG--CACCTCTGAGGGGCTCCTAGGATCCCAAGAAGAACAGCTTGCAAACACTGGGCCCAcagagtcaaagccaagctctgcactggagcatatggggccctcagaccacgtttcctccctcctcttgtcactcatttctgggactcaacctctg---ccggc---actggactcctctctgcttgcca-----aacatgtcacacaatgttgtgcctttatgcttgtccctctgATGTCTCATCAAGCGT-CAGAATCAGCCCACCATACCAAATTTGCTGGTT-TTTCCTGGACTTG--CCT------TAACTCTCCCATCCAGGGAAAATTTCATGT-TGTG------------GCCTCTGAGTCACTGTGTCCCAGGGCATCATACACACAGTAGCATCACAGACCTCAGCAC--------------TCAGCCACCAGCCTTCCCCAAGTGCAGGCCCTAAGAGCTCTTCATCTTTGAATCCC-CAATGCCTATCAC---CATTCCTTCACTGAAGCAGGAACTTACTAGACATTTACCGAAATGAGCTGAGAGAGGGCAA------AGATGAGGCTGCAACCATTGAAACTGAAGAACACAGGGGCACAGAGTAAAGTCATCAGCCTTTTTTTTTTTTTAATCT-------AGTTTTTCCTTTGCTGGCTTAGTCCAAATACATTTGCTGGGCAAATTCAAAAAGTCCTAATCCCAAATTGGTAAGATTAAAATAAAGAAGATTAACTGATGCAACCTAATTTAAAAGCATTAAGATTCAAAAATTTGGTCCAGA--CTTTGGAAGCTGATCTTAAAGCCATCCAGGAAGGGAAAGGATAAATATGAGACAAAGTGCCTTCCACAGATATATTAGCACTGAGAGACCCAGAAGTTACTAGCTGTGCGGGGCCTACCAGAGCACATATAGTGCTCTCTTTCCT---GGAGCCAACCCTTCTCATAAAAG--------CCCATCA a score=0.0 s hg17.chr13_random 134579 16 + 186858 GATGACTTATTAAAGT a score=718.0 s hg17.chr13_random 134579 4 + 186858 GATG s panTro1.chr1 116702792 4 + 229575298 GATG s rn3.chr2 61762634 4 - 258222147 GTTG a score=1110.0 s hg17.chr13_random 134583 12 + 186858 ACTTATTAAAGT s panTro1.chr1 116702796 12 + 229575298 ACTTATTAAAGT a score=76550.0 s hg17.chr13_random 134595 459 + 186858 GATGTCCAGAGAAT--------TGCTTCTGCCCT---------AGAAGCTTTGCTTGAAAAAAAAAATGTAGATAGCAGAagaatcacctgggaagcgtgccagaaatccagcttcccaggtccc--atcccgggagcctccaattgaagacttctgggacaaagccccaaaatgtgtactgttagcTGAGTCTGAGGCATTACTCTAGAATGGC---AGAGAAAGTATGCAAAGACCCAGACAACTGACTGC----AGCAAATGGGACAGGGAGCCCAAGAGA----CAGGTCCTGAAGAAGGACCCCACCTGTACTGCAACTCACCAGCTCATTTCCCACAAAGCCACACTCACTCACCAGAACCACCACAGTCCTCACTGGAAGTGAGCATCCACACAAGGAAAGGCTTTCAGGCCACTCATCACCAACTTAGTGACGGCACAACAACCACGCTCCAACCAAAGCTGGGGGAACTGAAGGCCCATG s panTro1.chr1 116702808 456 + 229575298 GATGTCCAGAGAAT--------TGCTTCTGCCCT---------AGAAGCTTTGCTTG---AAAAAAATGTAGATagcagaagaatcacctgggaagcgtgccagaaatccagcttcccaggtccc--atcccaggagcctccaattgaagacttctgggacgaagccccaaaatgtgtACTGTTAGCTGAGTCTGAGGCATTACTCTAGAATGGC---AGAGAAAGTACGCAAAGACCCAGACAACTGACTGC----AGCAAATGGGACAGGGAGCCCAAGAGA----CAGGTCCTGAAGAAGGACCCCACCTGTACTGCAACTCACCAGCTTATTTCCCACAAAGCCACACTCACTCACCAGATCCACCACAGTCCTCACTGGAAGTGAGCATCCGCACAAGGAAAGGCTTTCAGGCCACTCATCACCAACTTAGTGATGGCACAACAACCACGCTCCAACCAAAGCTGGGGGAACTGAAGGCCCATG s mm5.chr3 59210338 388 - 160575607 GGTGTCCAGAGGATCCTATAAGCCCTGCCCCCTT---------CAGAGCTGTGTCAA---GATAAAATGTAGACAGGTGAAGAAAGACCAGGGAA---TACTTAAGGCACAGCTTCCCAG---CC--TCGCCAGGAGTCTCCGAACAGGGACTTCAGGGGTG-TGTCCCAAA--GTTTACTATTTGGTGACTCTGAAGCATTG-TCTCAAATGTC---AGAGTAC-CATGCACAGACCAAGGCAACTGACCAC----------CAGGACAAGGAGGACAAGAGACAGGCAGGTTCTGA--CAGGA--------GTACTACCGCTTATAA----------CATGAAGGCG---TCATTC----------------TCCTCATCAGAG------------AAGAGAAAAAGCCCTC--------CACAGCCACCTCAGTAACTGTATTATGATTGCCCTCCAACCAAGTC----AGACCCACAGCTTAGCC s canFam1.chr17 56856211 411 + 66886099 GATGTCCAGAGAAT--------CTCTTCTGCCCCTATTACCTATAGAGTTgtgcttg------acaacataggcagcagaagaatcacctgggaagtgtattggaaatccagcttcccaggtccccaccaccaccacctgccaaacaggagcct---------ggCTCGGGAATGTGTCCTGTTGGGTAAGGTGGAAGCACTGCTCTAGAAGGACCCAAGAACAAGTGGAGGAAGCCCAAGATCGCTGACTGTATGTAGCAAATGGGACAGTGAGGTCAGGGT-----CAGGTCCTGAAGAGGAGACC------------------CCAGCTCATCTCCCACAAA-CCATACC----------------------CCTCAACAGAGGAACG-------ACACAGGAGGGTTCTCGGGCCACTTTCTGCT-CCTCGATGATGGCACGACAACCACCCTGCAACCAAAGCCAGGGGA-CTCAAGGCCCACA a score=0.0 s hg17.chr13_random 135054 1 + 186858 T a score=-69.0 s hg17.chr13_random 135054 1 + 186858 T s panTro1.chr1 116703264 1 + 229575298 T s mm5.chr3 59210726 1 - 160575607 G s rn3.chr2 61762663 1 - 258222147 T a score=37662.0 s hg17.chr13_random 135055 151 + 186858 GAGAACCTGCCCTCAGCC-CAGC-AGAGGCAGCCAGCAACAGCTGTCAGCTCTGGCCTG-GAGC-CTGGTGGGCTCATGAGACTGGGGAGTAGAGTCTGGGGCCA-CAGGAGA-TACCAAGAGAAGCCAGGGAGGGTTTCAGCTGGCTGTGCCACCA s panTro1.chr1 116703265 155 + 229575298 GAGAACCTGCCCTCAGCCTCAGCAAGAGGCAGCCAGCAACAGCTGTCAGCTCTGGCCTGCGAGCTCTGATGGGCTCATGAGACTGGGGAGTAGAGTCTGGGGCCA-CGGGAGA-TACCAAGAGAAGCCAGGGAGGGTTTCAGCTGGCTGTGCCACCA s mm5.chr3 59210727 145 - 160575607 GAGAACCTGCCC-AAGCT-CAGC-CAATGTCATCAACAGCTGCCGTCAGCTCAAAACTG-GAAC-CCTGTAGGCACAAGA-ACTAGGGA--CGAACACAGAGTCA-CAGGAGA-CATCCAAAGAAGCT--GTGGGGATATAGTGTGCCAGGCCACCA s rn3.chr2 61762664 137 - 258222147 GAGAATCTGCCC-CAGCT-CAGC-CAATGCAATCAACAACTGCT-CCAGTTCAACACTG-GA---------GGCACAAAA-CCCAGAGA--AGAACATAGAGTAA-CAGCAGA-CATCAAGAGAAGCT-GCGGGGACTGCAGTGTGCCAGGCCACCA s canFam1.chr17 56856622 133 + 66886099 GAGAGCCTGCC--------CAGC-GGAGGCAGCCAGCAACACTGGTCAGCTCTGATCTG-GAGC-ATGACTGG--------ATTTGGGG-----GTGTGGGGCAGTCGGGAGATTGATACAAGGAGTCAGGGAAGATCTCAGCTCACAGTGCTACCA a score=3855.0 s hg17.chr13_random 135206 14 + 186858 TCATTTTGCCTCAA s panTro1.chr1 116703420 14 + 229575298 TCATTTTGCCTCAA s rn3.chr2 61762863 12 - 258222147 TCA--TTACCTCAA s canFam1.chr17 56856755 14 + 66886099 CCTTTTTGCCCCAG a score=0.0 s hg17.chr13_random 135220 13 + 186858 GACAAATGATGGT a score=1328.0 s hg17.chr13_random 135220 14 + 186858 GACAAATGATGGTG s panTro1.chr1 116703434 14 + 229575298 GACAAATGATGGTG a score=0.0 s hg17.chr13_random 135220 13 + 186858 GACAAATGATGGT a score=-352.0 s hg17.chr13_random 135233 6 + 186858 GTCTAA-- s canFam1.chr17 56856769 6 + 66886099 --CTACAA a score=1776.0 s hg17.chr13_random 135234 5 + 186858 TCTAA s panTro1.chr1 116703448 5 + 229575298 TCTAA s mm5.chr3 59211064 5 - 160575607 TCTAA s canFam1.chr17 56856770 5 + 66886099 TACAA a score=127143.0 s hg17.chr13_random 135239 477 + 186858 AGACATCATGC--AACCTCCTCA-GGA-------CCCCTTCCAGGTC-TTCACTTAAGAAAACATATACAGTGGAACTTGGTACTC---TCAGACTGGCCTCATCA-ACATGCCCTATGACT--------CCTCTTGAGCCCCAACATAAAGTAATCTGCATtcagcatcctcacctgcaaaataggaatactaccacgtactcacctcacagaacgtctgggggatggtgaagtaatatgtga-taaagcatttTGGAAAT----TACAAAATATCACCAAAGAC-tattattag---ataaaaaataataatttaaGCCAAAATTTCTCTAGTTCATAATGTTAGACCTTGGATGG--AAGTCTCATTATCTCAAATGGC-TTCTGCAAATGAAACCAGATGGGTACCTGAGGAAG-GCAACATCATT--AAACGGGGCAGCAACTGTGGCTAATGGGAATGAAAGCCCGGAGTTTTAAGATACAAATGGTTTCTCAgaaat-ctccc------aatttt s panTro1.chr1 116703453 481 + 229575298 AGACATCATGA--AACCTCCTCA-GAA-------CCCCTTCCAGGCC-TTCACTTAAGAAAACGTCTACAGTGGAACTTGGTACTC---TCAGACTGGCCTCATCA-ACATGCCCTATGACT--------CCTCTTGAGCCCCAACATAAAGTAATCTGCATtcagcatcctcacctgcaaaataggagtactaccacctactcacctcacagaacgtctgggggatggtgaagtaatatgtgattaaagcatttTGGAAAT----TACAAAATATCACCAAAGAC-tattattag---ataaaaaataataatttaaGCCAAAATTTCTCTAGTCCATAATGTTAGACCTTGGATGG--AAGTCTCATTATCTCAAATGGCTTTCTGCAAATGAAACCAGATGGGTACCTGAGGAAGTGCAACATCATT--AAACGGGGCAGCAACTGTGCCTAATGGGAATGAAAGCCCAGAGTTTTAAGATACAAATGGTTTCTCAgaaatcctccc------aatttt s mm5.chr3 59211069 422 - 160575607 ACATACTATTCTTTCCCCCTTGG-GAA-------ACCTACCCAGGTC-TTCCCTTGACAGAGTGTCCACAGCAGGACCTAATACTC----CACACTGGCC-------ACATGGCACACA------------CTCTGGGGTCACACCACAGGGTACTCTGCATCCAGCATGCTCACCCACAATGTGTGGATGCCATTGTG-ACTTGCCTTACAGA---------------CATGACAATGTACGT-TAAAGCATTTCAGAAGTCTTGTTTAAAATGGCA-GAAATAT-TACTAT---------AAAAATAACGG--TACACTAACATCTCCTTAGCTCGCTGTCTCAGGCATCCAACAGAAAAGGCTCATCATCTCAAATGCC-CTCTGTAACT--------------------------GCAACATCATC--ACACGGAGTGGCATCCATGGCTAACAGGAATAAGAACCCAGAGTCATAAGACAAAGAT--TTTCTGTAAAAT-CACTC------ACTTTT s rn3.chr2 61762875 408 - 258222147 ACATACTATTC--TCCACCCTCAGGAA-------ACCTACCCAGGTC-TTCCCTTGACAATGTGTCCACAGCAGGACCTAATACGC----CACACTGGCCTCATGGCACAAACTCTGGGATCACACGTTACTCCTGGTGTAACACTACAGGGTGCT-------------------CTGTA--------------------ACTTGCCTCACAGA---------------CATGACAATATGTGT-TAAAGCATTTTAGAGGTCTTGTTTAAAATGGTA-GAAATAT-CAATAT---------AAAAATAATGG--TACACTAACATTTTCCTAGCTTACTGTTTCATGCACACAACAGAAGAGCCTCATCATCTCAAATGTC-CTCTGTAACG--------------------------GAAACATCATC--AAACCGGGTGACATTCATGGCTAACAGGACTAAGAACCCAGAGTCATAAGATAAACAT--TTTCTGTGAAAT-CACTCACTTGGAATTTT s canFam1.chr17 56856775 464 + 66886099 ACATATCACTC--AGCCTCATCA-GGGAACCAACCCCTTTCCAGGTCTTTTACCTGAGAAAGCCTTTATGGGAGAATCTGATACCCAGGCCAGGCTGGCCTCGACA-ACCCACCCTGTGACT-------TCTCCCTGGGCCCTGCCATAAAGTAGTCAGCCCTTGGTATCTGCCCC--------------GCCACCACCGACTTACCTTGCAGAACTTCTGAGGGATAATGAAGCAATATAGGA-TAAAGCAATTTAGAGGT----TACAAAACACCACTGAAGATGtattattaatataaaaataataataGTTCAAGCCAAAATTTCTCTAGATCACAATTTCATACCTCTGTTGG--AAGGCTTAGAATCTCAAATGTC-TTCTACAAATTAAACAGGACTGGTCCCTGAAACAG-GCAACACCATCAAAAACTGGGTAGCCAC---------------TGGGTGCCC--AGTCATCagatctagatggttcatgtaaaat-ctccc------aatttt a score=2844.0 s hg17.chr13_random 135716 9 + 186858 taaaatgag s panTro1.chr1 116703934 9 + 229575298 taaaatgag s mm5.chr3 59211721 9 - 160575607 TTGAAAAAA s rn3.chr2 61763287 9 - 258222147 TAAAAAAAG s canFam1.chr17 56857239 9 + 66886099 gaaaatgga a score=23278.0 s hg17.chr13_random 135725 89 + 186858 tttctaattcaaaaaagtgtaa--------------------acaccacgtag--gtggaagaaagcatgtctctaagcaggattcagtctgtgtggcacctgcctgt--gac s panTro1.chr1 116703943 89 + 229575298 tttctaattcaaaaaagtataa--------------------acaccacgtag--gtcaaagaaagcatgtctctaagcaggattcagtctgtgtggcacctgcctgt--gac s mm5.chr3 59211730 104 - 160575607 ACTCTCATTAAAAAAAGTTTTATTCAAGATAAAATATTTACGACACCATCTAG----TAGAGCAAACATGACAATGAGCAGAGGCCAGTATG---GGCAGCTGTATGC--AGC s rn3.chr2 61763509 100 - 258222147 TCTCTCATTTAAAAATGTCTCATTCAAAATAAAATAGG----ACACCATCTAG----TAAAGCAAATGTGACATTGAGCAGAGGCCAGCATG---AGCAGCTGTGTGC--AGC s canFam1.chr17 56857248 91 + 66886099 tttgtacttccagaaagtataaa-------------------attccacggagagggcaaagaagccatgtctgtaagctggattcagtctg---ggctgcTCCCTCCAAGAC a score=-4123.0 s hg17.chr13_random 135814 3 + 186858 TC---A- s panTro1.chr1 116704032 3 + 229575298 TC---A- s mm5.chr3 59211834 6 - 160575607 TCGCTG- s rn3.chr2 61763609 6 - 258222147 TCGCTG- s canFam1.chr17 56857339 3 + 66886099 TC---A- s galGal2.chr1 102139382 3 - 188239860 ----TGA a score=-1757.0 s hg17.chr13_random 135817 51 + 186858 GGTCTTAGGATACCTATGTCCCG----CACATCCCTCAGCTCCCTCCGGCCGCAC---------- s panTro1.chr1 116704035 51 + 229575298 GGTCTTAGGATACCTATGTCCCC----AACATCCCTCAGCTCCCTCCGGCCGCAC---------- s mm5.chr3 59211840 42 - 160575607 GAAGCTGGGA---CTATGTACCT-----GTTTCCCTCAG----CCTAGGCTACA----------- s rn3.chr2 61763615 42 - 258222147 GAAGCTGGGT---CTATGCACCT-----GTGCTCTTCAG----CTTAGGTTACA----------- s galGal2.chr1 102139385 60 - 188239860 AGTCCCAGACCACTCATGGATTTGCAGGGCTTGCTCCAC----CTCCACCCTTA-AGGGTGACTC a score=21608.0 s hg17.chr13_random 135868 130 + 186858 ---ACAAGACCGGCTTTAACTT---CACATGAAAACCTGCTGTCCTGGTAGAGGTGCCCAAA--GAAGGAGTCTCCACATTCTCCTAGTA---------------TCCGACAGCTTTCACCACCAAGTAAAGGACAGGACAAGAGGCTCAGAG s panTro1.chr1 116704086 130 + 229575298 ---ACAAGACCGGCTTTAACTT---CACGTGAAAACCTGCTGCCCTGGTAGAGGTGCCCAAA--GAAGGAGTCTCCACATTCTCCCAGTA---------------TCTGACAGCTTTCACCACCAAGTAAAGGACAGGACAAGAGGCTCAGAG s mm5.chr3 59211882 114 - 160575607 --------ACTATCTCTAACCT---CACTCAAAACCCTACCATATTGCTAT-GGTCATCAAA--CAAGGCGTCCCCACAACCTCCTAGCA---------------TCTGAC-----TCCCCACCAGGTGA-----AGGACAAGAAGCTGAGGG s rn3.chr2 61763657 113 - 258222147 --------GCTACCGCTAGCCT---CCCTCAAAACCCTACCATGTTGTTAC-GGTCACCAAA--CAAGGTGTCGCCACCACCTGA-AGTA---------------TCTGAC-----TCCCCACCAGGTAA-----AGGACAAGAAGCTGAGAG s canFam1.chr17 56857544 123 + 66886099 ---AGAAGGACAGATCTTACGTAGCTACGTAGACCCTCTTAGTACTTTCAGAGGTCACC-----GGAGGAGTCTGCACAGTCTCCCAGAG---------------TCTGACAACCCTCACCACCCGGCGC-----AGAAT--GGGGACAAGAG s galGal2.chr1 102139445 149 - 188239860 AGACGAAGGGGAGCTCTGCAGCTGGCCCTGCAGACTCATTTGTTTTGCCAG-TAACAGCAAGCTGAAAGGGAACCTAACAACACACAGTGCTGTTTTCCACCTCCTCTGCTCTCTCCCACCACCCAGCCAAGC--AAGAAAAGAGGG-AGGAG a score=1594.0 s hg17.chr13_random 135998 3 + 186858 GGA s panTro1.chr1 116704216 3 + 229575298 GGA s mm5.chr3 59211996 3 - 160575607 ACA s rn3.chr2 61763770 3 - 258222147 AGA s canFam1.chr17 56857667 3 + 66886099 GGA s galGal2.chr1 102139594 3 - 188239860 ACA s fr1.chrUn 163518872 3 - 349519338 GTA a score=404947.0 s hg17.chr13_random 136001 299 + 186858 CTGACCAGTTGGCTGGACGTTGACCACGGCT-CCCTCGGAACGC-TTTCGGGTCATAGCATACCACGACCCATCCGGATTCTGGATCCACTCGGCGGCCTCGCAGTAGAACTCGCCCTGGTCAGAAGGCTGCAGGTGGAAGATGGTGAGGCGGAAGGTGGTCCTCCCCAGCTTGTCCAGCCGCACCTCCCCCAGGCTCTGCCTCCAGGCATATTCGCTGCCGGAGTGAAGCATGAAATCTCGGCTCAGGGAGATGACCTCC----AC-GGGCTTC----------TCGCCAACTTT-----CTGCCAGAGCCAGGCCACAG s panTro1.chr1 116704219 302 + 229575298 CTGACCAGTTGGCTGGACGTTGACCACTGCTCCCCTCGGAACGCTTTTCGGGTCATAGCATACCACGACCCATCCGGATCCTGGATCCACTCGGCGGCCTCGCAGTAGAACTCGCCCTGGTCAGAAGGCTGCAGGTGGAAGATGGTGAGGCGGAAGGTGGTCCTCCCCAGCTTGTCCAGCCGCACCTCCCCCAGGCTCTGCCTCTGGGCATATTCGCTGCTGGAGTGAAGCATGAAATCTCGGCTCAGGGAGATGACCTCC----ACGGGGCTTC----------TCGCCAACTTT-----CTGCCAGAGCCAGGCCACAG s mm5.chr3 59211999 299 - 160575607 CTGACCAGTGGGCTGGACGTTGACCACGGCA-CCCTCGGAGCGC-TTCCTGGTCATGGCGTACCAAGAGCCATCTGGATCCTGGATCCACTCCGCAGCCTCGCAGTAGAACTCGCCCTGGTCGGAAGGCTGCAGGTGGAAGATGGTGAGACGAAAGGTGCTTCTCCCCAGCTTGTCCAGCCGCACCTCGCCCAGGCTCTGCCTCTGGGCATATTCGCTGCTGGAGTGCAGGATGAAGTCTCGGCTCAGGGAAATGACCTCC----AC-AGGGTTC----------TCGCCACCCTT-----CTGCCGCAGCCAGGATACCG s rn3.chr2 61763773 299 - 258222147 CTGACCAGTGGGCTGGACGTTGACCACGGCA-CCCTCAGAGCGC-TTCCTGGTCATGGCGTACCAAGAGCCGTCTGGATCCTGGATCCACTCTGCAGCCTCGCAGTAGAACTCGCCCTGGTCGGAGGGCTGCAGGTGGAAGATGGTGAGGCGGAACGTGCTTCTCCCCAGCTTGTCCAGCCGCACCTCGCCCAGGCTCTGCCTCTGCGCATATTCACTGCTGGAGTGCAGGATGAAGTCTCTGCTCAGGGAAATGACCTCC----AC-AGGGTTC----------TCGCCACCCTT-----TTGCCGGAGCCAGGATACCG s canFam1.chr17 56857670 299 + 66886099 CTGACCAGTGGGCTGGACGTTGACCACGGTT-CCCTCGGAGCGC-TTTCGGGTCATGGCATACCACGAGCCGTCCGGGTCCTGGATCCACTCGGCAGCCTCACAGTAGAACTCGCCCTGGTCAGAGGGCTGCAGGTGGAAGACGGTGAGGCGGAAGGTGGCGCTCCCCAGCTTGTCCAGCCGGACCTCCCCCAGACTCTGCCTCTGGGCATATTCACTGCTGGAGTGAAGCACGAAATCTCGGCTCAGGGAAATGACCTCC----AC-GGGCTTC----------TCGCCCCCTCT-----CTGCCGGAGCCAGGCCACAG s galGal2.chr1 102139597 299 - 188239860 CTGACCGGTGGCTTGCACGTTGACGATGGTG-CCCTGAGAACGC-TTGCGGGTCATGGCATACCAAGACTTGTCTGGGTCCTGGATCCACTCAGCTGCTTCACAGTAAAACTCGCCTTGGTCTGAGGGGTGGAGGTTGTAGATTGTGAGCTTCGAAGTGGTTTCGCCCACCTTGTCCAAGCGCACGTCCCCTGTGGCGTGCCGTTGGGCGTAGGTGCCCCCGGCCCGCAGGACGAAGTCGCGGCTGAGGGAGATGATCTCC----AC-GGGCGCC----------TCGCCGCCCCG-----CTGCCGGTACCAGGAGATGG s fr1.chrUn 163518875 308 - 349519338 CTCACCAGTTGGCTGAATGCGGAGCTGAGTC-TTGTCGCTTTGT-TTGCGGGTCATTGCAAACCAAGTGCCATCTGTGTCCTGAATCCACTCTGCAGCCTGGCAGTAGAGCAGGCCCTGGTCAATTGGCTGCAGCTTGTGAATAGTCAGTCTGTAGGATGTGGCGCTGGTTTTGTCCAGCCTCAGGTCTCCCGCTGCCATCCTCTGGCGGTATGTCCCCCCAGAGCGAAGGACAAAGTCTCTGGAGAGGGTGACCAGCTCCTGCGGC-GGGGCGG----------CCGTCTCTTCTGGGGAGCGCAGGTACCAACCCACCG s danRer1.chr10 18850433 308 - 25436222 CTCACCTGTGGGCTGAACTTTGACCGACGTC-TTCTCTGACTCT-TTCCGGGTCAGTGCGTACCAGGAGCGATCGGGGTGCTGGATCCATTCGGAGGCCTCGCAGTAAAACTCGCCCTGATCTGAAGGCTGAAGTTTATAGATGGTGAGACGGTAAGAAGTGGCACTGGTTTTGTCCAACCGCAGATCTCCAGAGGAAAGACGCTGACGATACTGTCCACCGGGTCGTAGAACAAAGTCTCGTGATAGAGTGACCAGATC-----AC-GTGGGCCAGAACTCGGGTCGTCAGTGGG-----ACGCAGGAACCAGCCTACAG a score=163105.0 s hg17.chr13_random 136300 129 + 186858 CACCTGGCTGTGCTGAACGGTCTCCGAGGCCACCTCACAAGTGAGTTCCAGTGGGTCCTGCTCCACTCTGTGCAGAGTCTGGGGCATGGCAGTGGTCTGCAGGGAGTCTGGGATCACTGCAACACAGAA-------- s panTro1.chr1 116705309 129 + 229575298 CAGGTGGCTGTGCTGAACGGTCTCCGAGGCCACCTCACAAGTGAGCTCCAGTGGGTCCTGCTCCACTCTGTGCAGAGTCTGGGGCATGGCAGTGGTCTGCAGGGAGTCTGGGATCACTGCAACACAGAA-------- s mm5.chr3 59212299 129 - 160575607 GAGGTGGGTGTGCTGGACGGTCTCGGTGGCCACTTCGCAGCTGAGCTCCAGGGGATCCTGTTCCACTTTGTGCAGTGTCTGGGGGACAGCCGTGGTCTGCAGAGAATCTGGGATCACTGTAAAATAGAA-------- s rn3.chr2 61764073 129 - 258222147 GAGGTGGGTATGCTGGAGGGTCTCGGTGGCCACTTCGCAACTGAGCTCCAGCGGGTCCTGTTCCACTTTGTGCAGAGTCTGGGGGACAGCCGTCGTCTGCAGGGAATCTGGGATCACTGTAACATAGAA-------- s canFam1.chr17 56857970 129 + 66886099 CAGGTGGCTGTGCTGGAATGTCTCCGTGGCCACCTCACAAGTGAGCTCCAGAGGATCCTGTTCCACTTTGTGCAGAGTCTGGGGCATGGCCGTGGTCTGCAGGGTGTCAGGGATCACTGCAACACAGAA-------- s galGal2.chr1 102139897 129 - 188239860 GACGTGGCTGTGCTGGGCCGTGCTCTTGGACACCTCACATTTCAGCTCCAGGGAGTCGCGCTCCACTCTGTGCAGCGTCTGCGGGACCGCGGTCACTCGTAGAGAGTCGGGGATCACTGCAGAGAAGGA-------- s fr1.chrUn 163519184 129 - 349519338 CAAGTGCGTGTGCTGGATTGTTGTCCGAGACACCTCGCAGGTGAGCTGCAGCGTGTCACCTTCGACCTTGGAGAGGGTCTGGGCTGGAGCCACCACCGTCAATGAGTCAGCAATGACTGTGGGGGGGGA-------- s danRer1.chr10 18850742 137 - 25436222 CACGTGAGTGTGCTGGGACGTCTGGCGTGTGACTTCACAACTCAGTTGTAGGGTGTCTCCTTCCACTTTGGCGAGGGTTTGAGCAGAAGCCGTCACTGCCAGAGAGTCCGGTATCACTGTGGAGAAAACCAGGAGAA a score=948.0 s hg17.chr13_random 136429 3 + 186858 ATG s panTro1.chr1 116705438 3 + 229575298 ATG s mm5.chr3 59212429 3 - 160575607 GTT s rn3.chr2 61764203 3 - 258222147 GTT s canFam1.chr17 56858099 3 + 66886099 ATG s galGal2.chr1 102276846 3 - 188239860 AAG s fr1.chrUn 163519313 3 - 349519338 ATG s danRer1.chr10 18850879 3 - 25436222 GAG a score=-3462.0 s hg17.chr13_random 136432 59 + 186858 TCCTGAGACTG--CAGTCACAAAGCCACAGAA-----TCTGAGACTCCCGGG--GCTAAGCTCCC-ATT s panTro1.chr1 116705441 60 + 229575298 TCCTGAGACTG--CAGTCACAAAGCCACAGAA-----TCTGAGACTCCCAGG--GCTAAGCTCCCCATT s mm5.chr3 59212432 43 - 160575607 CCCATGGAGGG--AGGTCACAGTGCTATAGAA-----TCTGAGACTC-------------------ACT s rn3.chr2 61764206 47 - 258222147 CCCACAGAGGA--CAGTTACAATGCTACAGAA-----TATGAGACTC------------ACTC---ACT s canFam1.chr17 56858102 62 + 66886099 TGCCGAGTGCA--CGGTCACAAAGCCATAGAA-----TTGCACCCTCGCAGGGTGCTAGCCACCCAAGC s galGal2.chr1 102276849 61 - 188239860 CACAGAGAGCAGCTTGTCAGGAGG----AAAAGTGTTTCTTGGCCTCAGTGGGCAATCTGCT----GGT s danRer1.chr10 18850882 64 - 25436222 GTTTGAGAGTG--AAGTTCATGAACAACAAAACACATCCTGGAAGCCACCGGGTCCATGTCTT---ATT a score=11463.0 s hg17.chr13_random 136491 15 + 186858 CCACGCAGGCGTCAC s panTro1.chr1 116705501 15 + 229575298 CCACGCAGGCATCAC s mm5.chr3 59212475 15 - 160575607 CCACACAGAAACCAC s rn3.chr2 61764253 15 - 258222147 CCACACAGAAACCAC s canFam1.chr17 56858164 15 + 66886099 CCACTCAGCAGTCAC s galGal2.chr1 102276910 15 - 188239860 CACCACAAGAACCAC a score=78966.0 s hg17.chr13_random 136506 369 + 186858 CACACTGCGTCCCTAACA--GTCATCCTTGAACCATCGATTCAAGGCCACAGACAGCCCC-AGATGCACATAAACAGAAAG----TTTTCTGTTCAGATTTGGAAATGCATTATTTTGGTGCTT-ACACTT-ACCTGTCTCGTATTTTAATAACACTTGGATAAAACAT-GGGGTGTA-TTTCATATTACATAATAAATGAACTCCCTGAAAATACTGTCTTTAAACAATTGTCTTATAGGTCAAATAACA--TTTGTTGTTGATTCTGGCACTGCTTTGAGATACTTTAACTTCACTTCTGACTGATCCTCTAATGGAAATGCCTCCTGGAACTTTTAGTT-------TTACATTTCTATACAA------TATCCTTT-------CTTTCCTTCCCACATC s panTro1.chr1 116705516 369 + 229575298 CGCACTGCGTCCCTAACA--GTCATCCTTGAACCATCGATTCAAGGCCACAGACAGCCCC-AAATGCACATAAACAGAAAG----TTTTCTGTTCGGATTCGGAAATGCATTATTTTGGTGCTT-ACACTT-ACCTGTCTCGTATTTTAATAACACTTGGATAAAACAT-GGGGTGTA-TTTCATATTACATAATAAATGAACTCCCTGAAAATACTGTCTTTAAACAATTGTCTTATAGGTCAGATAACA--TTTGTTGTTGATTCTGGCACTGCTTTGAGATACTTTAACTTCACTTCTGACTGGTCCTCTAATGGAAATGCCTCCTGGAACTTTTAGTT-------TTACATTTCTATACAA------CATCCTTT-------CTTTCCTTCCCACATC s mm5.chr3 59212490 273 - 160575607 TG--------------------------------------TTAACGCCACA----------------ACAGGGGCAGTA--------------------------------TTTTTTGGCACTG-ACACTT-GCTTG----GGATCTTAATGACGCTCAGAGCAAAGGT-GGATTTTC-TTAGAAAATGTATGAGAA--GAGCTCTCCGAGAATACTGTGTAAGAACAACTG-CTGACA--TCTAGTAAGA--TTCCTTGTTG-----GGTATCACTTTGAGATAGCTCAACCTCACTTCTGACC----------CAGGAATGGCTCCTGAGGAGTGGAGTCCAGGGAATTACATCCCAAAACAG------GGACGCTT-------GTTTGCTGATTACGTC s rn3.chr2 61764268 353 - 258222147 TG--TTAATGCCACAACAGGGGCAGCCTCTGGCAATTGATTCAAGGCCACAGGCAACCCCAAAAGGCATATAAACCCAAATACACTCTTCTGCTGTGGTAGCTAAGATAATATTTTTGGCACTG-ACACCT-GCTTG----GTATTTTAATGACACTCAGAGCAAAGGT-GGATTTTATTTTGAAAATGTATGAGAA--GAGCTCCCTGAGAATACTGTGTAGGGATAACTG-TTGACA--TCTAATAGGA--TTCCTTGTTGGTTTGGGTATTGCTCTGAGACAGCTCAACCTCACTTCTGACC----------------------CAGGGCCTTCTGACT-------TGACACTCCTATACAA----CTCAACCCTTCCCTTCCCTTCCCTTCCCTTACC s canFam1.chr17 56858179 327 + 66886099 TG---------------------------------------TGAGGCCTCC----------GGTGGCACAGAAACAGGAG-----TGTTCTGCTTGAATTTGCAA------TTTTTTGACACTTAACACTTAACCTGTTCGGTGTTTTAATAACACTTGGATAACAGGTAGAATTGCA-TTTTGTGTCTTATAGTAAATAAGCTCCCTGAAAATACTGTGTAAAAAGAATTCTCTTTTAGGCCAAATAATATTTTTGTTGTTCATTTTGGTTCTGTCCTGAGATACTGTCACTTGGCTTCTGACTCATCTTCAAAAGGAAATAGTTCCTAGAACTTGCAGTT-------TTACATTTCTTTACACCTTGCTCATTTCCT-------CTGCTCTCACTGCACC a score=13402.0 s hg17.chr13_random 136875 85 + 186858 -CCCATC----CTGTAACTTACTTCAGCAATGCA--GC--CCTAGGAAGATGATTTTTTT----AAAAAACCATTTTTG-GTAG----AAACAATAATCATCA s panTro1.chr1 116705885 88 + 229575298 -CCCATC----CTGTAACTTACTTCAGCAATGCA--GC--CCTAGGAAGATGATTTTTTTT-AAAAAAAACCATTTTTG-GTAG----AAACAATAATCATCA s rn3.chr2 61764682 84 - 258222147 -CCCATC----TCCCAGTCTTCCTCCTCAATGCACTGT--CCTTAGAAGGCTATTT--------AAAAAAATACTGAGGAGCAG----GAATAGAGAACACCA s canFam1.chr17 56858506 102 + 66886099 CCCTATCTGCTCCCCCACAAACTTCAGCAATGCAATGCAACCTAGGAAGTCTAGGTTTTTTAAAAAAAAAAAATCTTTG-GTAGAGGAAAGCAACGAACAGCA a score=2171.0 s hg17.chr13_random 136960 20 + 186858 TACCCTATT-TTTAGTGGGTT s panTro1.chr1 116705973 20 + 229575298 TACCCTATT-TTTAGTGGGTT s canFam1.chr17 56858608 21 + 66886099 TCTTCAATCATCTGGTAAGTT a score=35224.0 s hg17.chr13_random 136980 233 + 186858 TAATTTTCACCTAATTCATCGATCAAAGGGGTCCTCACTGGAAGGAAGCCACAGTCTGGAG-AGATTCAGGCAAGAGAAGAGATTTTCTCCGTGAT-CCCTTGGTCAGAATCAT-ACCCTGATCCTTGCTTGCACCTTTCT-GGAGATTA--AATAGC--ACCACCTCTCTGTCTGATGACAGTACCCTAGTCACAACTAGTATGTG-TTTTCTCCCTGTTCTCACCCAAGGATTGGGTCTT s panTro1.chr1 116705993 236 + 229575298 TAATTTTCACGTAATTCATCGATCAAAGGGGTCCTCAATGGAAGGAAGCCACAGTCTGGAG-AGATTCAGGCAAGAGAAGAGATTTTCTCCATGATCCCCTTGGTCAGAATCATAACCCTGATCCTTGCTTGCACCTTTCTGGGAGATTA--AATAGC--ACCACCTTTCTGTCTGATGAGAGTACCCTAGTGACAACTAGTATGTG-TTTTCTCCCTGTTCTCACCCAAGGATTGGGTCTT s rn3.chr2 61764982 222 - 258222147 CACTTTTCCCATAATTC----ATCAGAGTGGTCTGCAGCAGAAGGAAGCCACAGAGCACAGAAGGCTCAGGCAAATG--GAGGTGCTGCCCTGTAT-CCTCTCTCTGGAGTTTT-AGTCTGACCTTT------ATCCTTCT-GAAAACCACGGGCAGCTGCCCGCTCTGCGGTCTGAGAAAGGCAT-----TCACTACAAGGGTTTGCTTTTCTGCCTATACGCATCCCAAGATCGAGGCCT s canFam1.chr17 56858629 204 + 66886099 GAAATTTCCTGTAACTCGTGTGTCAGAGCGGTCTGC-GTGGGAGGAAGCCCCAG-----------CTGAGGCAAGTG--AGGTCACTGCCCTGTGGCCCCTTAGTCAGAACCAT-------------------CGTCCTCT-GAAGACTA--AACAGCC-CCCTGCCCTCGGTCTGATGGGGACACTCCAACCACAACCAGTGTGTG-TTTTCTCACTGCACTCATGTCTAGTGAGGGTCTC a score=3612.0 s hg17.chr13_random 137213 17 + 186858 ACAGGTCTCCTGCTGGG s panTro1.chr1 116706229 17 + 229575298 ACAGGTCTCCTGCTGGG s canFam1.chr17 56858833 17 + 66886099 CCAGGCCTCCTGACGGG a score=22597.0 s hg17.chr13_random 137230 261 + 186858 AACggccaagtgcggtggctcacacctataatcctaacactttgggaggctgagggaggcggatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatccaaaattagccaggcagggtagtgcatgcctctaatcccagctactcgggaggctgaggcaggagaactgcttgaacccgggaggtggaggttgcagtgagcc-----------ccattgcactccagcctgggcaacaaga s panTro1.chr1 116706246 272 + 229575298 AACggccaagtgcggtggctcacacctataatcctaacactttgggaggctgagggaggcggatcacctgaggtcgggagttcgagaccagcctgaccaacatggagaaaccccgtctctactaaaaatacaaaattagccaggcatggtagtgcatgcctgtaatcccagctactcgggaggctgaggcagaagaattgcttgaaccccggaggtggaggttgcagtgagcccaagatgcgcaccattgtactccaaccagagcaacaaga a score=3035.0 s hg17.chr13_random 137492 52 + 186858 cgaaactccgtcacacacacacacacacacacacacacacacacGAAAAATA s panTro1.chr1 116707888 48 + 229575298 ccaagctccgtcacacagagacacacacacacacacacac----gaaaaaaa a score=13854.0 s hg17.chr13_random 137544 93 + 186858 AAAGGTCTCCTGCTGGGACACAGACTAGTTAGAGAAAGGAAACATAAACAAATGATAGTATGTGTATTAATAAAAGAACTAGCAACACCCACT s panTro1.chr1 116707936 93 + 229575298 aaaGGTCTCCTGCTGGGACACAGACTAGTTAGAGAAAGGAAAAATAAACAAATGATAGTATGTGTATTAATAAAAGAACTAGCAACACCCACT s rn3.chr2 61765204 91 - 258222147 AAAGTCCTCTTACAAGGATACATGCTC-TTATAAAAACGAGAAATAAACAAA-GGCAGCGTCCTTATTGACAGAAGACCCACCGACATGCCCT a score=19425.0 s hg17.chr13_random 137637 75 + 186858 GCTTAG-TTGTGATAATAAAAACTGGACATTAAGA--TAGGCAGAAAAACAGAACAGCCTTGATA-CGGTTAACCCTTT s panTro1.chr1 116708029 77 + 229575298 GCTTAGGTTGTGATAATAAAAACTGGACATTAAGA--TAGGCAGAAAAACAGAACAGCCTTGATAACGGTTAACCCTTT s rn3.chr2 61765295 76 - 258222147 GCTTAA-CTGGGAAAATAAAAAGCAGAGATCTGGACTTCGGTAT-AAACCGGAAGAGCCTGGCTG-CGGTCTGTCCTCC s canFam1.chr17 10027076 77 - 66886099 GCATAA-TTGAGATCATAAAAACTAGAGGTTGAGAGTTGGGCAGAAAAACAGAACAGCCTTGATA-CTGTTGACCCTCC a score=-150.0 s hg17.chr13_random 137712 1 + 186858 G s panTro1.chr1 116708106 1 + 229575298 G s rn3.chr2 61765371 1 - 258222147 C a score=22469.0 s hg17.chr13_random 137713 132 + 186858 ACACTGGCAAACACTGTGA-CCAGTGCTGCCCACACTGGAAGCTCCTGCATCCCTCT-TCCTCATGTTTCCTTCAGCATTAAG-GAGCAACAAGG------GAGACAGCCAGTTCAT-AGTTCCTTACGCATGGAGCCAAAG s panTro1.chr1 116708107 132 + 229575298 ACACTGGCAAACACTATGA-CCAGTGCTGCCCACAATGGAAGCTCCTGCATCCCTCT-TCCTCATGTTTCCTTCAGCATTAAG-GAGCAACAAGG------GAGACAGCCAGTTCAT-AGTTCCTTACGCATGGAGCCAAAG s rn3.chr2 61765372 127 - 258222147 TCCCCGGCAGCGG--GTGG-CCAGGCAGGTCCACCCTAAAGGCTCCC-TATTCTTCTAGCTTCATCTTTTC--CGTCATTCAGAGAGCATCGTGG------GGGGCAGGCAGTTCAC-GGCTTCTTACAC--GCAGCCAGGG s canFam1.chr17 56859046 140 + 66886099 ACATCAGCAAGCATGGTGGCCCACGGCTGTCCACAGTGAAATCTGTC-CCCTCCCCT-CCTGCCAGTCCCTTCCATCATTCATGGAGTACCAGGGCTGAGCGAGACAGCTGGTGCACAAACTCCTCATTCGTGCAGCCAAAA a score=15312.0 s hg17.chr13_random 137845 105 + 186858 GACCTTCAATGTACAAG------GTCTGAGCAAGGACCCGCAGCCACATGTGCTTCCTGCTTCAGCAGTGCCCCGTGGGTCTCAGAGCTGCCCAGAGGCCTATCCTTCCGA s panTro1.chr1 116708239 105 + 229575298 GACCTTCAATGTACAAG------GTCTGAGCAAGGACCCACAGCCACATGTGCTTCCTGCTTCAGCAGTGCCCCGTGGGTCTCAGAGCTGCCCAAAGGCCTATCCTTCTGA s canFam1.chr17 56859186 99 + 66886099 GACCT---AGGGACAGGCCCCAAGTGTGAACAAGGACCCACAGGTACATTTGCTTCCTGATTCACAAGCACCCCACGGCTCTCAGAGCCCCTCCACTGCGCA--------- a score=1926.0 s hg17.chr13_random 137950 9 + 186858 GAGGTTCCT s panTro1.chr1 116708344 9 + 229575298 GAGGTTTCT s mm5.chr3 59213206 9 - 160575607 GGGGTGTTG s canFam1.chr17 56859285 9 + 66886099 GCGGTTTCA a score=12449.0 s hg17.chr13_random 137959 55 + 186858 CC-TCTCTTCCACCTGATGTCATATGTCTCATCTTCCTTGTCATT--------CAGATCATCAA s panTro1.chr1 116708353 57 + 229575298 CCCTCTCTTCCAACTGATGTCATACGTCTCATCTTCCTTGTCATTT-------CAGATCATCAA s mm5.chr3 59213215 51 - 160575607 CC-GCTCTTCCTGCTGGTCTCA-----CCCACTTTCCCTTCCAAGT-------CACATCTTCAA s rn3.chr2 61766069 45 - 258222147 CC-TCTCTTTCTGCTGGTCTCA-----TCCACTTTACCTTCCAAGC-------CACAC------ s canFam1.chr17 56859294 59 + 66886099 CC-TCTCTGCTAGCTGATGTCATGTGCTCC----TCTTTGTCATTTCTTCAGACAGATCATCAA a score=2955.0 s hg17.chr13_random 138014 8 + 186858 CCACAAAC s panTro1.chr1 116708410 8 + 229575298 CCACAAAC s rn3.chr2 61766114 8 - 258222147 CCACACAT s canFam1.chr17 56859353 8 + 66886099 CCACAGGC a score=5455.0 s hg17.chr13_random 138022 13 + 186858 GTCCTTGCCTT-AT s panTro1.chr1 116708418 13 + 229575298 GTCCTTGCCTT-AT s mm5.chr3 59213356 14 - 160575607 GATCTGGCCTTGAT s rn3.chr2 61766122 13 - 258222147 ATCCTTGCCAT-AG s canFam1.chr17 56859361 13 + 66886099 ATCCTTACCTT-AT a score=3354.0 s hg17.chr13_random 138035 12 + 186858 ATTTTCATATCC s panTro1.chr1 116708431 12 + 229575298 ATTTTCATATCC s mm5.chr3 59213370 12 - 160575607 AAATTCATTTTG s canFam1.chr17 56859374 12 + 66886099 ATTTTCACATCC a score=41279.0 s hg17.chr13_random 138047 211 + 186858 CTTTTCACCAGTTACAGGGTTAGTTAACTTAT-GAAATTCTTAACA--TCTGCATTAGATCTTTTTAAAGTTTCACCCTCAACCACCT-ATTATTTAGAAGTGAACACAGAAATTTAGTTTCCTTG-TGCTATC-------TGTTGACCCCTAAAATATGTTGGGAGTTTTGGGATTTTTTTT-AAAGTCAAAT--GCATGGCATAAAG-CAAAATTACACT---ACTAA s panTro1.chr1 116708443 214 + 229575298 CTTTTCACCAGTTACAGGGTTAGTTAACTTAT-GAAATTCTTAACA--TCTGCATTAGACCTTTTTAAAGTTTCACCCTCAACCACCT-ATTATTTAGAAGTGAACACAGAAATTTAGTTTCCTTGGTGCTATC-------TGTTGACCCCTAAAATATGTTGGGAGTTTTGGGATTTTTTTTTAAAGTCAAAT--GCATGGCATAAAGACAAAATTACACT---ACTAA s mm5.chr3 59213382 189 - 160575607 CCTTTCACCAG-CAAAGGTCTGCTTAACCACT-GTGGTGATTGATG--CTTGCACAAGAACTTTCC-ATGTGTCAGCCTTAGCCATCC-AGGGTTCACAAGTGTACTTAGGATTCATGGTCACTCA-TGCTCCC----TCATGCGGTTTTCTAA---------GGTGTCTGGGGAATCATATCGATAGGCAA------------------CAAAAGCACATG---AGGGA s rn3.chr2 61766221 213 - 258222147 CCTTTCACGAG-CAAAGGTCTGCTTAACAGCT-GAGGTTCCTAATGTTTTTGCTCAAGAACTTTCC-AAGTGTCAGCCTCAACTGACT-AGTGTTCACAATCGTGCATAGGCACCATGTTCATTCA-CACTCCCTCCCTCATGC-ATTTTCTAAGCTATCTGGGGAATTTT-----TTTTTTTTTAAGTCATATTGGTATGTTA------CAAAAACTCGTGGCAACAAA s canFam1.chr17 56859386 199 + 66886099 CCTTTTGCCAGCTACAGGTCAGTTAACCTTCTCTGAATTTTTAACA--CCTGCACCAGATTCTTCCTATGTTTTGGCCTCAGCCTTCTGATTATTTACAAACGAACCCACAATCTTTGTTCACTCA-CACTACC-------TGTTAACCACTAAAATATCCGGGGAGATTT--GTTTTTTTTTTTTTTTTAAGT----------------CAAAGTTGCACT---ACAAA a score=12194.0 s hg17.chr13_random 138258 45 + 186858 AGAACTGAGTCAGGCCAGACGCTGGCAACGTGAAGACAGCTTC------TC s panTro1.chr1 116708657 45 + 229575298 AGAACTGAGTCAGGCCAGACGCTGGCAACGTGAAGACAGCTTC------TC s mm5.chr3 59213571 40 - 160575607 GGGACTG----GGGCCTGACACTGGCCATGTGGAGGCAGAGTC-------A s rn3.chr2 61766434 40 - 258222147 GGGACTC----GGGCCTGACGCTGGCCTGGTGAGAGCAGAGTC-------A s canFam1.chr17 56859954 51 + 66886099 aggactgaCTCGGGTGGGATACTGACCATGGGAAAGAAACATCATCACCTC a score=571859.0 s hg17.chr13_random 138303 375 + 186858 CTTACCCACTAGGTTCATCTTTGCACTGTAACTCCCAAAGTA-TTGCTTATCGGTGCTGGGTGTGTGGCATTCATATTCTCCGGCATCCCGGGCCTGAAGATCTGTGATGTGCAATAGGGTTGGGTTCCCCTGGACTCTTTCTATGAAGATCTTCCCTCCGTGGACGCGCTGGGTGTAGATGGCATAGGGGAAGGAAGAGTCTATGGTGCTGATGATCTGCACCTCTCGCTCTGGCGATGAAGGCAGGTAAATGGACCACTGGAAATTCTGCTCAGGAGGTCCCTGGTAGCCACTCACATTGCACCAGATAGTGATGTGGGAGCCCTCTGTGCGGTACAAGGGTCCTTCCTGAACGGTGACCTGCCGCTGTGCTGA s panTro1.chr1 116708702 376 + 229575298 CTTACCCACTAGGTTCATCTTTGCACTGTAACTCCCAAAGTACTTGCTTATCGGTGCTGGGTGTGTGGCATTCATATTCTCCGGCATCCCGGGCCTGAAGATCTGTGATGTGCAATAGGGTTGGGTTCCCCTGGACTCTTTCTATGAAGATCTTCCCTCCGCGGACGCTCTGGGTGTAGATGGCATAGGGGAAGGAAGGGTCCATGGTGCTGACGATCTGCACCTCTCGCTCTGGCGACGAAGGCAGGTAAATGGACCACTGGAAATTCTGCTCAGAAGGTCCCTGGGAGCCACTCACATTGCACCAGATAGTGATGTGGGAGCCCTCCGTGCGGTACAAGGGTCCTTCCTGAACGGTGACCTGCCGCTGTGCTGA s mm5.chr3 59213611 375 - 160575607 CTTACCCACTAGGTTCATCTTGGCACTGTAACTCCCAAAGTA-GCGCTCATCGGTGTTGGGGGTGTGACATTCATACTCGCCGGCATCCCGGGCTTGCAGGTCTGTGATGTGAAGTAAGGCTGAGTTGCCCTGGATCCTCTCCACGTAGATCTTCCCACCGCGGACTCGCTGGGTGTAGATGGCGTACGGGAAGGAAGAGTCCACCGTGCTAACGATCTGTACTTCACGCTCAGGAGCAGAGGGCAGGTAAATGGACCACTGGAAGTTCTGCTCAGAGGGACCCTGGTAGCCACTCACGTTGCACCAGATGGTGATGTGGGAGCTCTCTGTGCGGTACAAGGGCCCTTCCTGGACGGTGACCTGTCGCTGCGCTGA s rn3.chr2 61766474 375 - 258222147 CTTACCCACTAGGTTCATCTTGGCACTGTAACTCCCAAAGTA-GCGCTCATCGGTGTTGGGGGTGTGGCATTCATACTCCCCAGCATCCCGGGCTTGCAGGTCTGTGATGTGAAGTAAGGCTGAATTCCCCTGGATTCTCTCCACGTAGATCTTCCCGCCTCGGACTCGCTGAGTGTAGATGGCATAAGGGAAGGAGGAGTCCACCGTGCTGACAATCTGTACCTCACGCTCTGGAGCAGAGGGCAGGTAAATGGACCACTGGAAGTTCTGCTCAGCAGGACCCTGGTAGCCACTCACGTTGCACCAGATGGTGATGTGGGAGCCCTCTGTGCGGTATAAGGGTCCTTCCTGGACGGTGACCTGCCGCTGCGCTGA s canFam1.chr17 56860005 375 + 66886099 CTTACCCACTAGGTTCATCTTGGCACTGTAACTCCCAAAGTA-CCGCTCATCCGTGTTGGGCGTGTGGCACTCATACTCCCCAGCATCCCGGGCCTGGAGATCGGTGATGTGCAACAAGGCTGAGTTCCCCTGGACTCTCTCCACGTAGATCTTGCCTCCACGGACACGCTGGGTGTAGATGGCATAAGGGAAGGATGAGTCCACGGTGCTGACGATTTGGACCTCACGCTCCGGGGCGGACGGCAGGTAAATGGACCACTGGAAATTCTGCTCAGAAGGCCCCTGGTAGCCGCTCACATTGCACCAGATGGTGATGTGGGAGCCCTCCGTGCGGTACAGGGGTCCTTCCTGGACGGCGACATGCCGCTGTGCCCG s galGal2.chr1 102164911 375 - 188239860 CCCACCTGTCAGGTTTGTCTTGGCGCTGTAGCTCCCAAAGTA-CCTCTCATCAGTGTTGGGCGTGTGGCACTCGTACTCGCCAGCATCTCGGTCCTGCAGCTCCGTGATGTGCAGCAGCACCGCGTCCCCCTGCACCCGCTCCACGTAGATCTCCTGGGCGCGCACCCGCTGCGTGTAGATGGCGTAGGGGAAGGAGGGGTCGGCGGTGCTGACGATCTGCACCTCCCGCTCCGAGGCAGAGGGCAGGTAGATGGACCACTGGAAGGTCTGCTCTGCTGGGCCCTGGTAGCCGCTCACCTTGCACCACAGTGTCACGTGGGAGCCCTCTGTGCGGTAGAGGGGCCCCTCCTGCACCGCCACGTGGCGCTGAGCGAA s fr1.chrUn 163538767 375 - 349519338 CTTACCTGTGAGGTTTGTACGCGCGCTGTAGGATCCTAGGTA-CCGGCCATCAGTGTTGGGTGTGTAACACTCAAACAGCCCTTGGTCATTGGCCTGCACTTTGGTGATGTGGAGCACGGCCGAGTCACGGCTCAGCCTCTCCACATAGATCTCTTTGCTGTTCACCCTCTGAGTGTAAATGGCATAGGCATAGTTGGGCTGAGCTGTGCTAACGATGCGGATCTCCCTGTCGGGTGCAGAGGGCAGGTACATGGACCACTCGAAGTCCTGCACAGTCCCTTGTTTGTAGCCGGTCACATTGCACCAGATGGTCACGTGGGAGCCCTCGGTCCGGATCAGAGGTCCAGCTTGTACCGTCACCACTCTCTGAGCCAC s danRer1.chr8 17125345 375 + 36410523 CTCACCGGTGAGGTTGGTACGGGCACTGTAGGAGCCCAGGTA-TCGGCTGTCTGTGTTCGGGGTATAGCACTCATACATGCCCTGGTCAGTGGCCTGCAGTTTAGTGATGTGCAACAGGACAGAGTCTCCGCTTAGCCTCTCGATGTAGATGTCCTTACTGTTGACACGTTGGGCATACAAGGCATAGGCATAGTTGTGCTGGGACGTGCTCACGATGCGGATCTCTCTATCAGGAGCGGTGTAAAGGTACATGGACCACTCAAAGTCTTGCTCCACTCCTTCTTTGTAGCCAGTCACGTTACACCAGATGGTGATGTGAGAGCCTTCTGTTCGAATCAAGGGCCCCGGCTGAACTGTGACCTGCCGCTGGGCCGA a score=15286.0 s hg17.chr13_random 138678 73 + 186858 CACCACACCTACGA-GGGAGAGAAACACA---------------GGCAACATGCTCACTTACTTCTCAGACCAAAATGCAAAGTAGGCA-- s panTro1.chr1 116709078 73 + 229575298 CACCACACCTACGA-GGGAGAGAAACACA---------------CGCAACATGCTTACTTACTTCTCAGACCAAAATGCAAAGTAGGCA-- s mm5.chr3 59213986 66 - 160575607 CACCACACCTAAG--GGGAGACAGACACA----------------GCAACGTG----CTTACTTTTCTGACT-GAATGCAAAACAGACA-- s rn3.chr2 61766849 55 - 258222147 CACCGCACCTAAG--GGGGAACAGACACA-------------------------------ACTTTTCTGACC-AAATGCAAAACAGACA-- s canFam1.chr17 56860380 66 + 66886099 CACTACACCT-----GTGGGAGATATACA------------------GACATGCTCACTTACTTCTCAGACCAAAACGCAGAGTACGCA-- s galGal2.chr1 102165286 87 - 188239860 GGCCATGCCTGTGAGAAGAGAGCAAAGCAGTATTATTACCTCCTGGCAGTCTGCTCGTGTGCCTCCCC--CCCAGACGCATCGTGGCCA-- s fr1.chrUn 163539142 59 - 349519338 GGCAACACCGGCTACAAGCAAGAGAGACG----------------GCAATA----------------AGAGAAAGAGGTAGAGAGGATGGG a score=120595.0 s hg17.chr13_random 138751 239 + 186858 GCAATCTCCAAAGGGTTT--GTTAC-TTGTGTGACATGA-TAATAATATAAACAGCTTAC---TGGCCCTTTCAAAGGCACTCTGTGatttataaatattaattaaaaCACTCTGTGGTAAAACAC--TGTCCCTAATTTGCATATATGGGAATTTGATCATGCCAAGA--TGTGCTTTTGTTACTTATTCAACAGCTGACCCTTGGGAA-------------------------------------TTTCATTAAGCCCCTCTGTTTGTCATGTATATGGCAGTTT s panTro1.chr1 116709151 242 + 229575298 GCAATCTCCAAAGGGTTTCTGTTATATTGTGTGACATGA-TAATAATATAAACAGTTTAC---TGGCCCTTTCAAAGGCGCTTTGTGatttataaatattaattaaaaCACTCTGTGGTAAAGCAC--TATCCCTAATTTGCATATATGGGAATTTGATCATGCCAAGA--TGTGCTTCTGTTACTTATTCAACAGCTGACCCTTGGGAA-------------------------------------TTTCATTTAGCCCCTCTGTTTGTCATTTATATGGCAGTTT s mm5.chr3 59214052 232 - 160575607 GCAGTCCCCAGAGGATTT--GTTAT-TTGTGTGACATGA-TGGCAGTATAAGTAGGTTAC---TGGCCCTTTCCAAGGCACTTTGTGATTTATAAATATTAATTAAAACA--GCGTGGTAAAGCTC--TGCGTCTAATTTGCATATATGGGAATTTGATCGCGCAAGGA--CATGGCTCTGTTACTTATTCAACA-CTGACCCTTGTGAA-------------------------------------TTTCATTTGGGCTCGC----TGTCATTTATACGGCAGCTT s rn3.chr2 61766904 230 - 258222147 GCAGTCCCCAGAGGGCTG--TTTAT-TTGCGAGACATGA-TGGCAGTATAAATAGGTTAC---TGGCCCTTTCCAAGGCACTCTGTGATTTATAAATATTAATTAAAACA--GTGTGGTAAAGCTG--GGCATCTAATTTGCATATATGGGAATTTGATAGAGCAAGGA--CGTGGCTCTGTTACTTATTCAACG-CTGACCCTTGTGAA-------------------------------------TTTCATTTGGTCTC------TGTCATTTATACGGCAGCTT s canFam1.chr17 56860446 235 + 66886099 GCAAACTTCAAAGGGTTT--ATTAT-TTGTGTGACATGA----CCATATAAATAGCTTGC---T-GCCTTTTCGGGGGCGTTCTGTGATTTATAAATATTAATTAAGACACTCTGTGGTAGAGCTCATGGTCCTTAATTTGCATATATGGAAATCTGACTATGCAAAAAGTCAAGGTGCTGTTGCTTATTCAACGGCTGACCCTTGGGAA-------------------------------------TTTCATCTAGTCCCTC----TGTCATTTGTGTAGCAGTTT s fr1.chrUn 163539201 233 - 349519338 GAAAATGAAAAAGACAAG--AGAAC-ATGGGTTACAAAACTGGTCTTTTAAATATTTAACACTTAGCATATTT--ATGCACCTTGTGT------------------------CTCTGAGAAAATAC--AGAAGCATTGTGACATGTGTAGCA----GAGCATTCTAGAA-----------AGTACTTA--------CTGAATCTCAGGTATacacacacacacacacacacacgcacacacacacTTTTTAAACACAACCCACCACTTGAAAGATTTACAGCAGCTT a score=6066.0 s hg17.chr13_random 138990 7 + 186858 -ATATCTA s panTro1.chr1 116709393 8 + 229575298 TATATCTA s mm5.chr3 59214284 8 - 160575607 TATATCTA s rn3.chr2 61767134 8 - 258222147 TCTATCTA s canFam1.chr17 56860681 8 + 66886099 TATATCTA a score=1092.0 s hg17.chr13_random 138997 2 + 186858 TT s panTro1.chr1 116709401 2 + 229575298 TT s mm5.chr3 59214292 2 - 160575607 TT s rn3.chr2 61767142 2 - 258222147 TT a score=151505.0 s hg17.chr13_random 138999 522 + 186858 TATTAATGCTGTGTATAAAGTTTTTAATAAAATA-AGCAGG-AAAAGTTGAATCCTTGGCACAAATTCA-GATGAAAACAAATAAAAGCAACCATCTAGAAATCTGGCTGAAATTAAATGCTTCTTCCTTGGTCCG-AGTGCTGGTGGGAGGGAGTCCTGGGAGCACCTTTTTACTGGTGC-----------TGCACCCTTCATTTTCCCATGTAGCTGCTCCCC-AACACCACCCCAAGGAGCATTCCTTAGTTT-CTCTTCCCTCTAT-AAATGGAGGCAGAGCTG-AGCTCCTGCAGG-CTG-CTATCGTTTTAAGCTGAGCACACCCAAATACAA----ATGTGAAGGGCTGAAAGAGATCCCTGATGCCCA-GATTCCCACAAA-CTGACAAAGG----------GGGGAACTAACAGTGCCCAGCTAAACCTGTGACAAGGACAGTCAGGCTACCCTTGAGTTTCCCACTCAAGACTCCCCCGCTGACCTCCTGCCTTCTGGCTCAGATACTGTTCTCCAAGGTCA------CTTCTGCCTGC------------CTTCTCCATGTTCTTC s panTro1.chr1 116709403 530 + 229575298 TATTAATGCTGTGTATAAAGTTTTTAATAAAATAGAGCAGGGAAAAGTTGAATCCTTGGCACAAATTCA-GATGAAAACAAATAAAAGCAACCATCTAGAAATCTGGCTGAAATTAAATGCTTCTTCCTTGGTCCG-AGCGCTGGTGGGAGGGAGTCCTGGGAGCACCTTTTTACTGGTGC-----------TGCACCCTTCAATTTCCCATGTAGCTGCTCCCC-AACACCACCCCAAGGAGCATTCCTTAGTTTTCTCTTCCCTCCATTAAATGGAGGCAGAGCTGGAGCTCCTGCAGGGCTGTCTATCGTTTTAAGCTGAGCACACCCAAACACAA----ATGTGAAGGGCTGAAACAGATCCCTGATGCCCA-GATTCCCACAAAACTGACAAAGG----------GGGGAACTAACAGTGCCCAGCTAAACCTGTGACAAGGACAGTCAGGCTACCCTTGAGTTTCCCACTCAAGACTCCCCCGCTGACCTCCTGCCTTCTGGCTCAGATACTGTTCTCCAAGGTCA------CTTCTGCCTGC------------CTTCTCCATGTTCTTC s mm5.chr3 59214294 482 - 160575607 TATTAACGCTGTTTATAAACTTTTTAATAAAATG-AACAGG-AAAAGTTGAGTCCTTGGCACAAATCCAGGAAAAAAACAAATAAAAGCAGCCGCCTTGTAATCTGGCTGAAATTAAACATTTCTCCCATGATTAGTGGGGTTGGCCCAAGAAAGCCATTGA---GTCTTTTTACTGGGGCACGACTTGGGAGGGGCACTCCATTTT------------ATTTCC-ATC-CTATCCTAAGGAGCACCTCC-------TTTTTCCCTGTAG-AAAGAGAGGCAAAC----AGATCCTACCA--CGG-CTGTCAGTTTCCAAGGAG------TGACCAGGA----GTGGGAAGG------------------CGCGCA-GAGTCCCACCAG-CTGACAAAGC----------AGAGAG-GGACAGTGTGCAGGAAGATCTGAAACAAGGTCGG------TGCCCTTGGGCTCCTGGCTC-TGACTGGCCCACCAAGCCCCTGCCTTCTGG-TGTGACACAGCTTTCCAAGGTCACGACTCCTCCTGCTTAC------------CCTCCCCACGTTCCTC s rn3.chr2 61767144 481 - 258222147 TATTAATGCTGTTTATAAACTTTTTAATAAAATG-AACAGG-AAAAGTTGAGTCCTTGGCACAAATCCA-GGCGAAAACAAATAAAGGCAGCCTCCTTGTAATCTGGTTGAAATTAAATGTTTCTCCCATGATTAGCAGGGCTGGCCCAAGAAAGCCGCTG----AGTCTGTTACTGGGGCGGGGGTTGGG-AGGGTGCTGCATTTT------------ATTCCC-AAC-TCATCCCAAGGAGCACCTCC-------CTCTTCCCTGTAC-AAAC--AGGCAAGC----AGATCCTGCAG--TGG-CGGCCACTTCACGTGGAG------TGAACAGGA----GTGTAAAGG------------------CTCGCA-GATTCCCACCAG-CCGGCAAAGC----------GGAGAG-GGACAGAGCGGAGGAAGATCTGACACAA-GTCAG------TACCCTTGAGCTCTTGGCTC-TGACTGGTCCACTGAAGCCCTGCCTTCTGG-TATGACA-AACGTTCCAAAGTTA------CTTCTCCCTCTGGTTAACCCCCACCCCTCCATGTCGCTC s canFam1.chr17 56860884 458 + 66886099 TATTGAGGCTGTTTATAAAGTTTTTAATAAAATG-AGCAGG-AAAAGTTGAACTCTTGGCACACGTTCA-GATGGAAA-----AAAAGCAACCATCTTGCAATCTG----------------------------AG-CCTGTGGGTCAGAGGGAGTCCTAGG---GCTCTTTCTCTGGTGC-----------TGCACCCTTGTTTTC---AAATAGCTGCTCCCAGGACAGGAGGTGGAGGGGCATTCCTTATCTC-CTCTCCCCTCTGT-GAATAGGGACAGAGCTG-AGCCCCTGCAGG-TGG-CTGCAGCTTTAAGCCGAGTGTACACGAATGTGAAAGTATGTGAAGGGCTGAAGCACAGCCCTGCTGCCCAGGATGCCTGCATG-CTGGCAGTGGGTTGGGTTGAGGGGAGCTGACAGTGT------AGACCTGACCCTGGGATGG------CGGCTCTGATTCCCC--------ACTATTCC-------CCCTGCCTTCTGGCTGGGATA--------------TG------CCTCTACATAC------------CTTCTCCATGTTCTTA a score=517.0 s hg17.chr13_random 139521 3 + 186858 TTA s panTro1.chr1 116709933 3 + 229575298 TTA s rn3.chr2 61767625 3 - 258222147 TCA s canFam1.chr17 56861342 3 + 66886099 ACA a score=4146.0 s hg17.chr13_random 139524 33 + 186858 ------------------AAGTGGC--------ATGGTGAGTTTAAGTTCTCATTTCAT s panTro1.chr1 116709936 33 + 229575298 ------------------AAGTGGC--------ATGGTGAGTTTAATTTCTCATTTCAC s canFam1.chr17 56861345 59 + 66886099 CGGTCTCCCCCATACACTCAGGGGCTGGGAAATATGGTGAGTTCCATTTCTAATTCCAT a score=184266.0 s hg17.chr13_random 139557 901 + 186858 -GCCAACTCAACACTGATTGTGCCTGAGCCACTCAGAAGGTGGGAGG-GGGCACA------ATGCTGCCTCTTCATTTC---GGCAGTGGTCACGTACTGCAG-------------------GTTGTGAAAAGCGCAGGtgagttatag------------gcgcagctttgccaccaattagagctgattgtgtcatctcagacaacttgcttttcttctccagaccttgatcttctcatctatcacatgatttctaagaaggctttagagaggactagcatgggttccgatgctggctttgtcact-tattaactgtggtcttggataagctgcttaacctctctaagcctcagttttctcatcggtaagatggggataataatgcctgtctcatagggttattgagaagatttagtaaca--tctgtaaagaccctagcacagagcctagcccacaatcagtcctcaataaagagctgctggct-aAGACATATTTCTGCTGGAACATTCTGTGGCTCTGG-ATCCATAGAGGACAGGATTTGGCCAATGACTGCTTAAGGACATTTCAATGGCCCCTTGACAATGACACCA--TCACTGGGCTGCCCGCCTCATCCC-ACAGCTGCAGCCCATT-----CTTGTGATAGCTTCCCTTTTCCC-CCACAAATGGGAATGGCGGCTGCCCTGGCTAT--GCCTATCTGAAGTGGATCCAGCTGGTGAACAGC-CGGGACAGCTCAAATACTAGTGGAGTGCAGCTCTC-TGCCCAGCCCAGCAG-------------------GTG-ACTGTGCCTCAGTGTAAGCTAATCTAATCTGCAAGATGACAGACCTCAAAA-CGGC---CCATACAATGAAATGCCCATGGCTTGCAAAACTTTAATTCATGCAGAACCTTTC-CTCACAAACAAAATCTTACACAGAACCCCATCTTGGCTTCAGCAGAATCAG--------GAAAAATAAAAA s panTro1.chr1 116709969 906 + 229575298 -GCCAACTCAACACTGATTGTGCCTGAGCCACTCAGAAGGCGGGAGG-GGGCACA------ACACTGCCTCTTCATTTC---GGCAGTGGTCACATACTGCAG-------------------GTTGTGAAAAGCGCAGGtgagttatag------------gcgcagctttgccaccagttagagctggttgtgtcatctcagacaacttgcttttcttctccagaccttgatcttctcatctatcacatgaTTTCTAAGAAggctttggagaggactagcatgggttccgatgctggctttgtcact-tattaactgtgatcttggataagctgcttaacctctctaagcctcggttttctcatcggtaagatggggataataatgcctgtctcatagggttattgagaagatttaataaca--tctgtaaagaccctaccacagagcctagcccacaatcagtcctcaataaaGAGCTGCTGGCT-AAGACATATTTCTGCTGGAACATTCTGTGGCTCTGG-ATCCATAGAGGACAGGATTTGGCCAATGACTGCTTAAGGACATTTCAATGGCCCCTTGACAATGACACCA--TTACTGGGCTGCCCACCTCCTCCCCACAGCTGCAGCCCATT-----CTTGTGATAGCTTCCCTTTTCCC-CCACAAATGGGAATGGCGGCTGCCCCAGCTAT--GCCTATCTGAAGTGGATCCAGCTGGTGAACAGCTCGGGACAGCTCAAATACTAGTGGAGTGCAGCTCTCCTGCCCAGCCCAGCAG-------------------GGGGACTGTGCCTCAGTGTAAGCTAATCTAATCTGCAAGATGACAGACCTCAAAAACGGC---CCATACAATGAAATGCCCATGGCTTGCAAAACTTTAATTCATGCAGAACCTTTC-CTCACAAACAAAATCTTACAGAGAACCCCATCTTGGCTTCAGCAGAATCAG--------GAAAAATATAAA s rn3.chr2 61768278 809 - 258222147 -GTCAACGCAGCATTGACGATCCCTAAGCCACTCAAACATGGGCAGG------------------CATCTTTCCACTCCCTGGGCAGCAGCTGGGTGTGGCAGATGCCAGGGACAGCCATGTGTGGCAGAAAGAGCATCTGAGGTGTGGTCTCAGAAGTTAGCACAGCTCAGCC------TAGAGCCGGCCACATCATCTCGG---------------CCTCCAGACCTTGGCCTCATC-------------TTACAGAAAGGACTTCAGAGAGGACAA-----CGCTGCAGTGCTGGCTTTGTCACT-TTCCAGCTGAAACCTTGGACAAGTGAC--AAGGACCATGAGCCTCAGTTTCCCCATGTGCAAGA--------------------------------TAAAAGGATTGAATAAAATGTCTATAAAGGCCCTGACTCGGGGACTAAGACACAATTAGTACTCAATAAAAAA--GAT-GCC-AAGTCTCAGACTGGCTAAAGCAGCCAACAGATCGAG-A---GGTGGAGACAAATCTTGGTCAGTAACTGCTCAAGAGCATCTCAGTGGCCTCCTGGGAGTG---CCA--CATCTTGGCTGCTCACATCTATCC-A-AGCTGCAGCCCACT-----CCTGTGAAGCCTTTCATTTTAC-----CAAGTAGAA----------------------GCGTATCTGCAGCAGACTCAGCGGCTAAGGAGT---GGATAACACCAATCCTAGCAGTGTGCAGCTC---AGTTCAGCCCAGAGG-------------------GCC-CTCGGGCCTCAGAGCAAGCTGGCCTAATCTGCAGGACCATAGGCTTGCAA--CGGCCAGCTCTGCAGAGCAAAGGCCAGTGC-------ACTTACACT-GTACAGAACTGTTT---------CAAAGTCTAACAGGGAACTCCATCCTGGTTTCAACAGAGGCAGAAAAATGAGAAAAATAAAAA s canFam1.chr17 56861404 876 + 66886099 GCCCAGCCTAACGCTGCTATTGCCTGAGCCGCTGAGCAGGTGGGGGGAGGGTACACCCCCCGTGACCTGCCTTCCCCTC---AGCAGCAGGTGGGCACGGCAG-----------------TTAaggcaaaaggagcgggtgagttctag------------ccacagctctgccagcagctggaactggctatgtcaccttggacaggttgcttctccctcctggactttgatctcttcatctataaaatgaTTTCCAACAAggcttgggagtagactagcacatgtgccagtgctggctttgttaatgtactagctgtgaccttggatgagttacctaacatctccaagcctcagtttcctcatctgtaagatggggataataatgtgtgcctcacagaggtatca---------aataaca--tctgcaaagcccctga--------------cacaatTACTCTTCAGTATAGAGCTGCTGGCTAAAAACCTCTCCCGGCTGGAACATTCTGCAGCTCTTGCATCC-------ACAGCGCTTGGCCAG-----------GGACATTCCGATGGCCTCTTGACAATGACAGCATCTCTCTGGGCTACCCACCTCCACCC-ACAGCTGCAGCCCACTTCCACCCCATGAAAGCTTCCCCTCTCCCTCTCCAAAAAGGAATCACAGCTGCCCCCACTGTAAACCTATCTGACAGCCATCCAGCTGATGAACAGC-TGGGACAGCTCAAGTACTAGTAGGATGCGGCTC---TGCCCAGTCCAGGGGTGCAGCTGGGGAGGGGGCAGTG-TTTGTGCCTCTAAGCGAGCTGGCCTTATCTACAAGATGACAGA----------------CTTTACAAGGAAAGACGTGTGGCTTATCA-GCTATAATTCACGGAGAACCTTCCCCTCCCGATCCAAATCTTACCTAGAACCCCAACCTGGCCACAG--------------------GAATAAAAA a score=0.0 s hg17.chr13_random 140458 5 + 186858 ATTGG a score=273.0 s hg17.chr13_random 140458 1 + 186858 A s panTro1.chr1 116710875 1 + 229575298 A s rn3.chr2 61769087 1 - 258222147 A a score=382.0 s hg17.chr13_random 140459 4 + 186858 TTGG s panTro1.chr1 116710876 4 + 229575298 TTGG a score=26568.0 s hg17.chr13_random 140463 156 + 186858 CAGGGGAAGGAAATAAACAGAACAAGTGGTATCTGAATTTATTTGATATATTCTGGTTGATGGCATTAATTATGATATTTAAAGTCACCATGAGGACAACTCATTAG-TAATATCAGTATGTTAAAATATGGTGCATAACGTTTTTACTATATGTAc s panTro1.chr1 116710880 156 + 229575298 CAGGGGAAGGAAATAAATAGAACAAGTGGTATCTGAATTTATTTGATATATTCTGGTTGATGGCATTAATTATGATATTTAAAGTCACCATGAGGACAACTCATTAG-TAATATCAGTATGTTAAAATATGGTGCATAACATTTTTACTATATGTAc s canFam1.chr17 56862280 147 + 66886099 CTGGGAACTGAA--AAACTGAA------GGGTGTGAATTTAATTGATCCACCCTGGTTGACAGCATTCATTACCACA--GAGAGTCACTGAGAAGACAGCTCATTAGTTATTTTCAGTATGTTAGAATTTGGTGTATAACATTTTGACTATGTGTAC a score=15254.0 s hg17.chr13_random 140619 169 + 186858 agtcatgcactgaataacatttcagtcaatgaggaaacacatgtgcaacagtgatcctgtaagattataatggagtatatatagagatctaatatatggcacttaatgttggcatggcagatcaagtaggggaaatgactgatatttagtaacagtgctgggacatttg s panTro1.chr1 116711036 169 + 229575298 agtcatgcactgaataacatttcaatcaatgaggaaacacatgtgcaacagtgatcctgtaagagtataatggagcatatatagagatctaatatatggcacttaatgttggcatggcagatcaagtaggggaaatgactgatatttagtaacagtgctgggacatttc a score=58215.0 s hg17.chr13_random 140788 537 + 186858 attttccataataaaatatataaatgaaaatatatatcccatctcggtttgttgaaatacaccctatgatgttcacacaagaatgaaattgcctaacgacacatttcttaaaacatgtccccatcattaagtgacccatgactgTATACACGCACACATATGGTGACA-TTTGAATCAAATGATTGCAGTATTCCTGAAACACAGAACATTTTGCAAACAATTTACCTACATTCATAGCATTAGGTATCCTTTGAATTGCAGTGTTCTATGACAGAACAACTACAACCAACCCCCATCCATCTCCTGCAAAGAAGGCTGGAGGCAGGTCAGGGTACA-CCAGCATCTTCAAGGACtgcttctcagtcctggacctacactggaatcacct----ggggagctttaaaaaaaataacagtgcctggaccccacctgacataa-ctggtcttaggattaatta-gga--tt--ttttttgaa-gctccacagatgattcaaat--caggtgtagcaaagCACTGTTACTTTAAAGTGTCTCTACCTACATGGTG s panTro1.chr1 116711205 543 + 229575298 attttccataataaaatatataaataaaaatatatatcccatctaggtttgttgaagtacaccctatgatgtccacacaagaatgaaattgcctaatgatgcatttcttaaaacatgtccccatcattaagtgacccatgactgTATACACACACAAATATGGTGACAATTTTAATCAAATGATTGCAGTATTCCTGAAACACAGAACATTTTGCAAACAATGTAACTACATTCATAACATTAGGTATCCTTTGAATTGCAGTGTTCTATGACAGAGCAACCACAACCAACCCCCATACATCTCCTGCAAAGAAGGCTGGAGGCAAGTCAGGGTACA-CCAGCATCTTTAAGGACtgcttctcaatcctggacctacactggaatcacct----ggggagctttaaaaaaaataacagtgcctggaccccacctgacataaactggtcttaggattaattatggacttt--ttttttgaaagctccacagatgattcaaat--caggtgtagcaaagCACTGTTACTTTAAAGTGTCTCTACCTACATGGTG s canFam1.chr17 56862427 376 + 66886099 GCTTTCTATGACAA--------------------------------------------------------------------------------------------CTTAAAATATCT---------------------------------------ATATGGTGACA-TCTGAATCAAATGTTTGCACTACTCGAGGAACACAGAAC--CCTGAAAACAATTTAACTACATTCACAACATTTAGGTCTCGTTGTATTTTGTTGTTCGGTGATGCAAAAGCCACCACTG---CTCGTA-GTCTGCCGCAGAGAAGGTTAGAGGCAGGTCAGGATTGAGCCGGCTTCTTCAA------------------GGAGCcacactgaattcacccggggggggggcttt--acaaagtagcagggcctttg-cccacctgatgtaa-ctggcctggggtgtggcct-gggcattagcattttgaa-----------aaattcAAATGCAAGGCAGAGTCAAGGACTGCTGCTTTCAGGGGTCTCTACATAC----TG a score=21911.0 s hg17.chr13_random 141325 107 + 186858 CCAGCCAAGTGCTCAAATGAA---------ATATCTTAAGGCTCTCACTAGCTTTAAGTTTCTCTCTTTGGTAGAGACCCAATCA----CTGGTTCAAGGAAGTTTCATTCTCCTCCAGT s panTro1.chr1 116711748 107 + 229575298 CCAGCCAAGTGCTCAAATGAA---------ATATCTTAAGGCTCTCACTAGCTTTAAGTTTCTCTCTTTGGTAGAGACCCAATCA----CTGGTTCAAGGAAGTTTCATTCTCCTCCAGT s mm5.chr3 59215874 101 - 160575607 CCACTCAGGTTCCCAAATGAATGGACACATCTAACTGAAAGCTCTCAACAGTTTTAAGCTCCCAGTTTTGA-------------------GGATTTCACAAAGTGCCATTCTCCTTTTGT s canFam1.chr17 56862803 117 + 66886099 GCAACCAGGTGTCCAATTAAAAACCATCTCCTAACTTGAAGCTCTC---AGCTTTAAGCTCCTTCTTTCTGCAAAGGCTCTGCAAGAATTTGGGTCAAGAAAACTTCATTCTTCTCTAGT a score=0.0 s hg17.chr13_random 141432 17 + 186858 CTTCCCCAGTGCAAAAG a score=-67.0 s hg17.chr13_random 141432 13 + 186858 CTTCCCCAGTGCA s panTro1.chr1 116711855 13 + 229575298 CTTCCCCAGTGCA s mm5.chr3 59215975 2 - 160575607 CC----------- a score=2238.0 s hg17.chr13_random 141445 4 + 186858 AAAG s panTro1.chr1 116711868 4 + 229575298 AAAG s mm5.chr3 59215977 4 - 160575607 AAAG s rn3.chr2 61769848 4 - 258222147 AAAG a score=125679.0 s hg17.chr13_random 141449 328 + 186858 AAAAGAGCTGAGACCCATCAGATACTGGCTTTTGTGATGCAATAATGAGTTTAACCAGAATGCATCCTATTTACAGACCTTACAAAGGCACTCGGCCAGCGGATCATGCATGTCCTCCCCAC-----------CCAAAGGTAAACAGTGTTAAGTGGCCTGAATGAGCCAGGTCAGCAGGGTCAAATCAACTTGTCTAGGCTGGAAGCAGGTTATAAACAATCCGGACAAATAAAT--------AACTACTGGACTGCACTTTAACCACACACATTCAGCTGCACC-T----GTTTATTAAATACCTCCTTAATTTCCCT-CTG-CCCCACAAAGGGCTTCTGACCCCTG-AAAA s panTro1.chr1 116711872 330 + 229575298 AAAAGAGCTGAGACCCATCAGATACTGGCTTTTGTGATGCAATAACGAGTTTAACCAGAATGCATCCTATTTACAGACCTTACAAAGGCACTCAGCCAGTGGATCATGCATGTCCTCCCCAC-----------CCAAAGGTAAACAGTGTTAAGTGGCCTGAATGAGCCAGGACAGCAGGGTCAAATCAACTTGTCTAGGCTGGAAGTAGGTTATAAACAATCCAGACAAATAAAT--------AACTACTGGATTGCACTTTAACCACACACATTCAGCTGCACCGT----GTTTATTAAATACCTCCTTAATTTCCCT-CTG-GCCCACAAAGGGCTTCTGACCCTTGTAAAA s mm5.chr3 59215981 311 - 160575607 AAAACAGCTGGACCCCGTCTGA----------TGCAATCTGATAATGAGCTTAACCACAGTGCATTCAGCTCACCGACCTTAAACAAGCA---------TGGATCCTATACTACACACACAC------ACACACCAAGGAAAAACAGTGTTGAGTGGCCTAGATGAGCCAGGGCAGCTGGGTCAGAGCAACTCATGCAGAGCAAAAGCAGATGACAACCAATCCTGATAAATAAACA-------AACTATCCGTT-----CTTAGC----TACAGCCAGCCCTACC-TGTTGGTTGGTTAACTATCTCTGTCATTTCCCTCCCA-CCTTACAAACAGCTCTTCGTCCCTG-AAAA s rn3.chr2 61769852 315 - 258222147 AAAACAGCTGAACCCCATCTGA----------TGCAATCTGGTAATGAGCTTAACCGGTATGCATTCCGCTCACAGATCTCATACAAGCA---------TGGAGTCTATACTGCCCCCCCACACACACACACATGAAGGGGAAACAGTGTTCAATGACCTGAATGAGCCAGGACAGCTGGGTCAGAACAACTCATCCAGACCAGAAGCAGATTATAACCAGTCCTGACAAACAAACA-------AACTGTCCATT-----CTTC------CACAGTCAGCCATACC-TGTTGGTTGGTTAACTATCTCTGTCATTTCCCTCCCA-CCCTACAAACAGCTCTGCATCCCTG-AAAA s canFam1.chr17 56862920 319 + 66886099 -GAATGGGCGTAGCACATCCTG-----------GCAACGCA-----GGGCTTAGCCAGTGGGCATTCTCCTAACAGACCTAACCAAAGTGTTTGATTGTGGGATCACACACACCACTCCC-------------TGAAAAGTAAACAGTGTTAAGTGGCCTCAATGAGCCAGGGCATCAGGGTCAACACAATTTGTCCAAGCCAGAAGCAGGTCATAAACAGCCCTGCCAAACAAATAAGTAAGTAAACACTGGATTGTACTTGAACCACACACATTCAGCTGCATC-T----GTTCGTTCAGTATCTCCTTTACTTCCTTCCTGCCCCCACAAAGGGCCTTTGACCCCTG-AAAA a score=2900.0 s hg17.chr13_random 141777 6 + 186858 TAATGC s panTro1.chr1 116712202 6 + 229575298 TAATGC s mm5.chr3 59216445 6 - 160575607 GAGTGC s rn3.chr2 61770167 6 - 258222147 CAGGGC s canFam1.chr17 56863239 6 + 66886099 TAATGC a score=89470.0 s hg17.chr13_random 141783 312 + 186858 ----------------TTCTCAACATAAAAATAA---TTGTTTTCTTCTTGGCAGTTTAATTCCCCTTCCACACATCCCACCCCCCCATTTCCCTATAATGGTAATACCCTGCTGTGCAGACCTCTGC------------TGCCTCCAAAGAGACACAGGCACCC-AACCCTGACCAGGGCATCCTCTGACC-CACAGCCCC-TCTATCTCCCCTCTCAACCTACAATAGAAAGTTCCTCCCAGGCAAGGATCATTTTTTTT----------AAATAACTTTTTTAACTTTAGACATT-CTGTACTCTTTGGATTACTCTGCAATAAGCAAATATGACTTCTGTAACATAAAAAGAA s panTro1.chr1 116712208 314 + 229575298 ----------------TTCTCAACATAAAAATAA---TTGTTTTCTTCTTGGCAGTTTAATTCCCCTTCCACACATCCCACCCCTCCATTTCCCTATAATGGTAATACCCTGCTGTGCAGACCTCTGC------------TGCCTCCAAAGAGACACAGGCACCCCAACCCTGACCAGGGCATCCTCTGACC-CACAGCGCC-TCTATCTCCCCTCTCAACCTACAATAGAAAGTTCCTCCCAGGCAAGGATCATTTTTTTT---------TAAATAACTTTTTTAACTTTAGACATT-CTGTACTCTTTGGATTACTCTGCAATAAGCAAATATGACTTCTGTAACATAAAAAGAA s mm5.chr3 59216451 279 - 160575607 ----------------AGCTTGATACAGAAATAA-AGTGAATTTATTTTCAACAGACCAATTCTCCTTT--CACATCAAACTCTTCAATGTCCC------AGGAAGTCTCTGCGATGCTAATTTCTGC------------TGCCTTCAAACAGAC-CAGGTCCCC-AACTTTGCCCACAGCAGTTGCTGGAC-CA---------------CCTCCCTTAGTCTACAACAGTAGGCTCCTCCCC-GTGAGGACTGTTTCTTTA--------AAAAATAACAATTATAACTTCAGACATT-CTGTACCCTTTGGGT------------ACAGAATGCCACTTCTGCAGTGAGAAAAGA- s rn3.chr2 61770325 285 - 258222147 ----------------TGCTTAACACAGAAAG-----TGAATTTTCTTTCAATAGACCCACTCTCCTTT--CACACCAAACTCTCCAGTGTCCT------GGAAAGTCTCTGCGATGCTAACCTCTGC------------TGCCTACAAACAGAC-TGGGTCCTC-AACTTTGCCCAGGGCGGCTGCCTG----------------ACCACCTCCCTTAGTCTACAACAGCAGGCTCCTCCCC-ATGAAGACTGTTTCTTTA--------AAAAGGAATAGTTAT-CCTTCAGACATT-CTGCACCCTTCAGGTTGCTCTGTAATAGGCAAATGCCACTTCTGCAGTG-AAAAGGA- s canFam1.chr17 56863245 345 + 66886099 TGTTCTTAGAGAATGGACCCTAACATAGAAGTAAAAATTACCTTTTTCTTCACATTTTAATTTCTTCTG--TATACCTCACCTCCACATTTCCTATTCCTGGCACTGCCC-------CTCATTTTTCCAAGACAGTGTTTTGTCTTCAAAGGGACCCAGGCCCTC-TACCT--GCCAAGGCATCCCCTGGCCTCACAGCCCCTTCCATCTTCCCTCTCAGCCTATGACAGAAGACTCCTTCCAAGCAAAGATCACTTTTTCATTATTATTATTATTACTCTTTTTCACTTTAGACATTCCTATACTTTTTGAATTACTTTGCAACAAGCAAATATCGCTTCCACAGTTTAAAAAGAA a score=5907.0 s hg17.chr13_random 142095 36 + 186858 AGAT-----------------------CAAAATGTTATATATA-ACTGCATGAAAAGAAC s panTro1.chr1 116712522 37 + 229575298 AGAT-----------------------CAAAATGTTATATAGATACTGCATGAAAAGAAC s mm5.chr3 59216730 24 - 160575607 ---------------------------CCCAGTCTCATCTGTA---------GAAAGGAC s rn3.chr2 61770610 24 - 258222147 ---------------------------CCCAGTCTCATCTGTA---------GAAAGGAC s canFam1.chr17 56863788 59 + 66886099 AGATTTAAAAAGAAAAGAATAAATATACACAGTTTCATATATA-ACTGTATAAAAAGGAT a score=37957.0 s hg17.chr13_random 142131 96 + 186858 TAGAAAGAAAATActaggtgacaggatggcaagtgatttttatttttttcttaatatttt-actccttc---ccccagttctctgcaatgagtatgtacc s panTro1.chr1 116712559 97 + 229575298 TAGAAAGAAAATActaggtgacaggatggcaagtgatttttatttttttcttaatatttttactccttc---ccccagtcctctgcaatgagtatgtacc s mm5.chr3 59216754 80 - 160575607 TAGAAGGTAAACCCTGGGCCACAGGA---CAAGTAA-TTTTATTTCCCTTTTTATACTGC-ACTC---------------CTCTGCAAGGCGTGTGAACC s rn3.chr2 61770634 80 - 258222147 TAGAAGGTAAATACAGGGCCATAAGA---CAAGTAA-TTTTATTTCTGTTTTTATACTGC-TCTC---------------CTCTGCAAGGCGTGTGAACC s canFam1.chr17 56868402 99 + 66886099 TAGAGAGAAAATActgggtaataggaaggcaagtgatttttattttcttctttgtagttt-actcctccccaccctcatcctctgcaaagattatgtact a score=273.0 s hg17.chr13_random 142227 1 + 186858 a s panTro1.chr1 116712656 1 + 229575298 a s mm5.chr3 59216834 1 - 160575607 A a score=1116.0 s hg17.chr13_random 142227 17 + 186858 agttttataactagaaa s canFam1.chr17 56868501 17 + 66886099 agttctataaataggaa a score=3289.0 s hg17.chr13_random 142228 16 + 186858 gttttataactagaaa s panTro1.chr1 116712657 16 + 229575298 gttttataactggaaa s canFam1.chr17 56868502 16 + 66886099 gttctataaataggaa a score=14862.0 s hg17.chr13_random 142244 48 + 186858 aaaaTTTTAGCCAAAAAGAAAAATAATGCATGTTTGCTATATAAAATT s panTro1.chr1 116712673 48 + 229575298 aaaaTTTTAGCCAAAAATAAAAATAATGCATGTTTGCTATATAAAATT s rn3.chr2 61770714 47 - 258222147 AAAGCTTTACTCCAAAATACAAATGATGC-TAACTGCTGTATAAAGCT s canFam1.chr17 56868518 48 + 66886099 aggaaTTTAACCAAAAATAAAAGTGACATATGATTGCCATATAAAATT a score=1144.0 s hg17.chr13_random 142292 11 + 186858 CACTACTGTAG s panTro1.chr1 116712721 11 + 229575298 CACTACTGTAG s rn3.chr2 61770761 10 - 258222147 T-CTTCTATAG a score=39989.0 s hg17.chr13_random 142303 431 + 186858 TGTTTATATATATATACatatttggtctttgtccccagttcctggcactgagctcctaaaccccttggaacttcctaagcaatgggagtacattttgttatttataagaagccccttttggccatcccagagtttatgctaatggggtgactgaaggtgagcacggaggcagtttcaaggaaggagctggccacgcttagagttgtggagttttcagccccacccttagacctccaaggacaagagggggaccgcagattgatccaatcagcattggtcagtgatttgatcagtcatacccatgtaatgaaatcccatatgaaaaccctaaataacggagttaggagagcttctgggtgctggaagcggcgtgcaccaggagagggcatgggcagtcagcactactcccctctcagaccttgccctatgca s panTro1.chr1 116712732 431 + 229575298 TATTTATATATATATACatatttggtctttgtccccagttcctagcactgagctcctaaaccccttggaacttcctaagcaatgggagtaccttttgttatttataagaagccccttttggccatcccagagtttatgctaacgaggtgactgaaggtgagcacggaggcagtttcaaggaaggagctggccacgcttagagttgtggagttttcagccccacccttagacctccaaggacaagaaggggaccgcagattgatccaatcagtattggtcagtgatttgatcagtcatacccatgtaatgaaatcccatatgaaaaccctaaataacggagttaggagagcttctgggtgctggaagcggtgtgcaccaggagagggcatgggcagtcagcactactcccctctcagaccttgccctatgca a score=1239.0 s hg17.chr13_random 142734 11 + 186858 ctaaataggac s panTro1.chr1 116713163 11 + 229575298 ctaaataggac s rn3.chr2 61771482 11 - 258222147 CTGAGTTCAGC a score=34718.0 s hg17.chr13_random 142745 188 + 186858 tgacctatgtgaccaataggaaatgcacaaatggtggaatgtgacttccaagg------------------ctaggtcataaaaagacaag-------------------------------cacgatgttatgaggacatcaaagcagccatat--ggggaggaccgcatgaggcctcctgccaacagctagcactaacttgctagcatgtg---------actggaagtagattctccagcctcag s panTro1.chr1 116713174 188 + 229575298 tgacctatgtgaccaataggaaatgcacaaatggtggaatgtgacttccaggg------------------ctaggtcataaaaagacaag-------------------------------cacgatgttatgaggacatcaaagcagccatat--ggggaggaccgcatgaggcctcctgccaacagctagcactaacttgctagcacgtg---------actggaagtagattctccagcctcag s rn3.chr2 61771493 196 - 258222147 TGACCTGTGGGGAC-ACAGGAAATGCAGAAACCATGCACT-TGGCTTCTGAGGGTCAATCTGCCTGCTCTCCCAGACCA-------------------------------------------CACGG-GCTGTGAGGACATCAAAGCAGTCAGAT-----GAGGGCCACCTGAGGCTTGGTGCCACCAGTCAACACTAACCTGTGAGCA-GTGGACAGAGCCACCAAGAGTGGATCTTCCAGCCCTAG s canFam1.chr17 56868986 212 + 66886099 tgccctatgc-aCTGACTGGAAAAgcagaaatgctagagtatgacttccaagg------------------caaggctataaaaagacaagggtttctgccttcttctctgggaccacatataaccgtgtcaggaagatatcaaagcagccccctctggtcaggtctacccgaggcctccagccaacaaccagGCCCAGCC------AAGATG---------ACTGTACGCTG--TCGGGAGCCACAG a score=0.0 s hg17.chr13_random 142933 7 + 186858 tcaactc a score=1224.0 s hg17.chr13_random 142933 7 + 186858 tcaactc s panTro1.chr1 116713362 7 + 229575298 tcaactc s rn3.chr2 61771689 7 - 258222147 TCAATCT a score=2490.0 s hg17.chr13_random 142940 15 + 186858 agtca-agccttcaga s panTro1.chr1 116713369 15 + 229575298 agtta-agccttcaga s canFam1.chr17 56869198 16 + 66886099 AGTCAGAGCCACCAGA a score=67908.0 s hg17.chr13_random 142955 735 + 186858 taatgtcaaccccagGCATCtttttgttgttgttgagacagggtctcactctgtcacccaggctggagtgcagtggtgcaatcatagctcactgcagccttgacctccgaggctcaagtgatcctcccacatcagcctcctgagtatctgggaccaccagcacacaccaccatgcctggctaacttttttatttcttatagagacgggatgatatggttggggtctgtgtacccacctaaatctcacgttcaattataatccccaatgttagaggtggggcctggtgggaggtgactggatcacaggaatagatctttcatgaatgatttagcatcacccttttggtgctgtgctcgttagagttctcacagtatctaattgtttaaaagtgtgtggcacctcccccctctctctc--gctc-ctgctttggccatgtaaggcgtgcctgcttccccttcaccttccaccatgattgaaagtttcctgtggttgccccagaagccgagcagatgccagcattatgctccctgaacagcctgtggaactgtgagacaattaaacctcttttctttataaattctccagtctcatgtatttatagcaatgtgagaactgactaatacatagggtctcactgtgttgcccaggctggtctcaaactcctgggctcaagtaatcctcctggctttgcttcccagagtgtagagattacaggcatgagccactgaacctgccc s panTro1.chr1 116713384 738 + 229575298 taatgtcaaccccagGCATCtttttgttgttgttgagacagggtctcactctgtcacccaggctggagtgcagtggtgcaatcatagctcactgcagccttgacctctgaggctcaagtgatcctcccacatcagcctcctgagtatctgggaccaccagcacacaccaccatgcctggctaacttttttatatcttatagagacgggatgatatggttggggtctgtgtacccacctaaatctcacgttcaattataatccccaatgttagaggtggggcctggtgggaggtgactggatcacaggaatggatctttcatgaatgatttagcatcacccttttggtgctgtgctcgttagagttctcacagtatctaattgtttaaaagtgtgtggcacctcccccctctctctcttgctctctgatttggccatgtaaggcatgcctgcttccccttcaccttccaccatgattgaaagtttcctgtggttgccccagaagctgagcagatgccagcattatgctccctgaacagcctgtggaactgtgagacaattaaaccccttttccttataaattctccagtctcatgtatttatagcaatgtgagaactgactaatacatagggcctcactgtgttgcccaggctggtctcaaactcctgggctcaagtaatcctcctggctttgcttcccagagtgtagagattacaggcatgagccactgaacctgccc a score=13679.0 s hg17.chr13_random 143690 115 + 186858 CTTTCcccccaacaa-catcttgattgcaacctcctgggagactccaagtcagaagtatccagttaagatgttactgactttctgaaccacagaa-----actgtgagataataaacatct s panTro1.chr1 116714122 116 + 229575298 CTTTCCccccaacaaacatcttgattgcaacctcctgggagactctgagtcagaagtatccagttaagatgttactgactttctgaaccacagaa-----actgtgagataataaacatct s rn3.chr2 61771712 106 - 258222147 GGCTGGCCCAGAGAA-GATCTGGACTGTTGCTTCCCGGGAGCCTCCAAGCCTGAA-------------ATACTACTGAATTCCTGAGTCACAGGGACACCACCCCTAAAT-GTCAACATTT a score=27143.0 s hg17.chr13_random 143805 147 + 186858 attgt--tcctttaagcc--ttaagtttg-gggctctttttttt-------------------------------acaccaatatataacta---atGTAGACACCTGCAGTCCCTAAGATTGAATGCAAAATTGTGTTACATACACATGAGTGTGttcttctgggaaaagagtccataaacttca s panTro1.chr1 116714238 148 + 229575298 attgt--tcctttaagcc--ttaagtttg-gggctttttttttt------------------------------tacaccaatatataacta---atGTAGACACCTGCAGTCCCTAAGATTGAATGCAAAATTGTGTTACATACACATGAGTATGttcttctgggaaaagagtccataaacttca s rn3.chr2 61771818 183 - 258222147 GCTGTTGTCATTAGAGCTAATTCATTCTGCGGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTAGCTATCTATCTCCATCCTTCCAAG-CCTAAGATTAAATGTATAACTGCATCATATGCATACTTACATATTCT--AGGGGGGAGAGCCTATGTATTTCC s canFam1.chr17 56869403 147 + 66886099 ACtgt--tgctttaagcc--tcaagtttt-gggataatttgttt------------------------------tgtaccaatatatggcca---ataTCAACAGCTGTGAGTCCTAAGATTTAATGAAATATTGTGTTCCATACCCATGTATGTG-TCTTCTGGAAAAAGGGTCCATAAATCTCA a score=8938.0 s hg17.chr13_random 143952 34 + 186858 aaagattctcaaagga--atccaagacccaaaaaga- s panTro1.chr1 116714386 34 + 229575298 aaagattctcaaggga--atccaagacccaaaaaga- s rn3.chr2 61772205 36 - 258222147 ATGTATTTCAAAAGGATTATTCCAGGCCCAAAAAGA- s canFam1.chr17 56869550 35 + 66886099 AAAGATTCTGAAAGCA--ATTTAAGGCCCAGAAAAGA a score=14392.0 s hg17.chr13_random 143986 103 + 186858 -ttaagaaACATTGCATCAG-ACAATAAATTGTCAATGAGCAAGGTCCTGTCCTTTTAGACTGGGTTTTGAAA-TCACCCATCCCACAAATATATGA----TACCACTTA s panTro1.chr1 116714420 103 + 229575298 -ttaagaaACATTGCATCAG-ACAATAAATTGTCAATGAGCAAGGTCCTGTCCTTTTAGACTGGGTGTTGAAA-TCACCCATCCCACAAATATATGA----TACCACTTA s canFam1.chr17 56869585 109 + 66886099 GTTAAG-AATATTGCTTTAGAATATTACATGATCATTAGGACAGTCTATGTCCTTTTAGATTTACTTGTGAAAGTCTCCAGTCACATAAACACATGGTATCTATCACTTA a score=69742.0 s hg17.chr13_random 144089 296 + 186858 ACTAGTTTTTCAAGATATTTCTTGTTCAAAGATGCTCCCACTTTTTCTTTGTGCTCAAGTCCTAGATAAACCTGGCTAGGGGCAGGAAGTATGATTCAGGAGTTAGTGAGCCGGGAGGGCTCACTGTTCCTGGGAAAGCCAGCTTCTCATGCA-ATTTTTGGAATATGCCTT--GGCTCAGA-AACCTACCTCTCTAGGCATAGGATCCAA-CTTATATGTTCAAGATGCGTGACTGAG--------------------------------------CATGTGAAA---GTGTCAGAGGGA------------------------------TCGACCTCACCATTTTACATCTACTTTTCCAGTTGTGGCCC s panTro1.chr1 116714523 295 + 229575298 ACTAGTTTTTCAAGATATTTGTTGTTCAAAGATGCTCCCACTTTTTCTTTGTGCTCAAGTCCTAGATAAACCTGGCTAGGGGCAGGAGGTATGATTCAGGAGTTAGTGAGCCGGGAGGGCTCACTGTGCCTGGGAAAGCCAGCTTCTCATGCA-ATTTTTGGAATATGCCTT--GGCTCAGA-AAC-TACCTCTCTAGGCATAGGATCCAA-CTTATATGTTCAAGATGTGTGACTCAG--------------------------------------CATGTGAAA---GTGTCAGAGGGA------------------------------TCGACCTCACCATTTTACATCTACTTTTCCAGTTGTGGCCC s rn3.chr2 61772358 343 - 258222147 ACCAAATTACCAAGACATTCCTTGTCCAAGGATGCATTCGCATTCAC----TGTTAAAATCCTAG-TGTGCCTGGCTCAGGGT----GACATGATTCAGCAGTTCATGGCCAGGGAGCAGCCAATACGCC--------------TCACATTCA-TTTCTTGGAACATGCCTTAGGATTCAGA-GACATACACCTCTTATTACAGGATCTAATTTTTTATGTTCAAGATGTATGACTGAGCACGTATTCAAACACGTAGACCATGGGAATAGGGCTCTCATGTGACAGCTGTGTCAGCGAAATGCTTGCACTATGACTCGGGGACCTGAGCGTCAGCCCCAC--TCTTAAATGT--TTTTCTACATGTGACTC s canFam1.chr17 56869694 289 + 66886099 ACTAGTTTTTCAAGATACTACATATCCCAGGATGCTCT--TTTTTCCTTTGTATT-AAGTCCCAGATGAACCTGGCTAGGGGC----AGTATGATTCAGGAGTTAGTGAGC-AGGAGAGGTCACTGTGCCTGTGGAAACTAGCTTCTCATGCATTTTTTTGGAATATGCCTA--GGCTCAGGTAACCCACATCTCTAGGCAAAGGATCCAA-CTGCTATGCTTGTGACGCATGACTGAG--------------------------------------CATGTCAAA---GCATCAAAGGA-------------------------------CCTAGCTCACTGTTCCACGTCTGTTCTTCCAGTTGTGGTCT a score=17389.0 s hg17.chr13_random 144385 85 + 186858 CTACAATCATCAAAGCTCATTCAGCACCATGCTCCTCCAAATTCTGCATGCGACTCAGCCACACTAGTATCTTTCTTCATCTATA s panTro1.chr1 116714818 85 + 229575298 CTACAATCATCAAAACTCATTCACCACCATGCTCCTCCAAATTCTGCATGTGACTCAGCCACACTAGTATCTTTCTTCATCTATA s canFam1.chr17 56869983 85 + 66886099 CTACAATTATCAAAGCTCACTCAGCACCCAGCTGGTACAAATTCTACACACAACTCCATCACACTGGCATAtttctttatctata a score=4124.0 s hg17.chr13_random 144470 13 + 186858 AGATGAAAGTAAT s panTro1.chr1 116714903 13 + 229575298 AGATGAAAGTAAT s rn3.chr2 61773779 13 - 258222147 ATATGGGGATGAT s canFam1.chr17 56870068 13 + 66886099 aaatgggaataat a score=83703.0 s hg17.chr13_random 144483 168 + 186858 ACAATGCACCATGTAGCAAACTCACAGGAGACCCTAGAGATCAAATAATACTGTGAAAGCCACCAAATGAATATTTTAAAATTTTATCTCATTTCT-GCCAAGGTGAGATATCAATCTAAAAACAGGAT-----AAATCTTTGTAAGTACAAGAACATTAAAAAGAACATTAAG------- s panTro1.chr1 116714916 168 + 229575298 ACAATGTACCATGTAGCAAACTCACAGGAGACCCTAGAGATCAAATAATACTGTGAAAGCCACCAAATGAATATTTTAAAATTTTATCTCATTTCT-GCCAAGGTGAGATATCAATCTAAAAACAGGAT-----AAATCTTTGTAAGTACAAGAACATTAAAAAGAATATTAAG------- s mm5.chr3 59218854 166 - 160575607 ATGATGCACCATGTACCAGTCTCCTGGGGAACCCTGGAGAACAAATAATACT-TGAAAACCAACAAATGAGTATTTTAAAATTTCATCTC----CT-ACCAATATGAGATATTGATCTAAAAATGGGTCTCGTGAAAGCTC--TAAGTTTAGAAGTATTAAAGGGAACATAACG------- s rn3.chr2 61773792 166 - 258222147 GTAATGCACCATGCACCAGTCTCCTGGGGAACCCTGGAGAGCAAATAATACT-TGAAAACCAACAGATGAGTATTTTAAAATTTCATCTC----CT-ACCAATATGAGATATTGATCTAAAAATGGGTCTCATGAAAGCTC--TAAGTATAGAAGTGTTAAAAGGAACATTAAA------- s canFam1.chr17 56870081 172 + 66886099 gcaatgcaccatatctcaATCTCACAGGTAACCCCAGAGGTCACATAATATTGCAAAAGCCACTAAATGAGTATTTCAGGATTCCAGTTAATTTCTGGCCAACATGAGATA---ATCTAAAAACAGGAA-----AAGGCTCTGTAAGTACCAGAGCA-TAAAAGGAACATCAATGTTTAAC a score=15075.0 s hg17.chr13_random 144651 67 + 186858 TTT------GGGTTAAAAATGCAAAACTGCATATGCAGGAAAATTATGTTTAA--AAAAAAAA-------AAATCCTACACC s panTro1.chr1 116715084 69 + 229575298 TTT------GGGTTAAAAATGTGAAACTGCATATGCAGGAAAATTACGTTTAAGAAAAAAAAA-------AAATCCTACACC s mm5.chr3 59219020 75 - 160575607 TTTCACTTCGGGTTAAAGATGCAAA-----AGATACACGGAGCATATGTACAC--AGTGAGAATGTGTTGGAGCCCTGTCCC s rn3.chr2 61774073 62 - 258222147 TTT------GGGTTAAAGATGCAAA-----ATGGACACAGTGGCTATGTACGC--AGTGTAGA-------AAACCCTGTCCC s canFam1.chr17 56870253 61 + 66886099 TTT------TGGCTAAAAATGAAAAATGGCATAGGTAGTAAAATACTGTTCAA--------AA-------AAATACTATACC a score=126489.0 s hg17.chr13_random 144718 612 + 186858 TACAAAAACAACCAAACAAAACATTGATGATACTGGGCTGAATCACTGAATGGTGAGAATATGAGTGATTTTCTCCTCTC----------CTACT----------------TTTCTCAATACCTTTTCTCTATTATCTCCT----TTTTTAAGTAAG---CAAGTATATATTGTTCTAAACTGAAGATAAATGATCATGAGTAGCACTTTCccaggcactgtcctagttgctctgcatacatcatctcatttaattctcacaac-agtgaatggggtcgatttcattacagccgcatttaccagacaaggaaatggttttcaagcttaagtaaccttct-catgacacagAATGTGACTAAGAGTTTTCTT--ATTCTATGGCTCACACTAAATGTGCTGTGTGAATATCAGTGAGAAGTAATAAAGCACTGACTGGATCTTCTTGCCCACCTGGTCCTAAAAGAAATGACGGGGAATCTATGCAGTCCCAAGTTAAAAATGGGAACTGAACTGAGCTGCCACAGCATGCTGAATAGGTGGAATCCAGGCCAACTAAGTGCTTCATGGAACTTAAAGGCTCCAGAGGGAAAGCAATCAGGAAGGCACTTCCACAGGCACATCGGTGACAACTTCTGGGGATTCTTACCT s panTro1.chr1 116715153 612 + 229575298 TACAAAAACAACCAAACAAAACATTGATGATACCAGGCTGAATCACTGAATGGTGAGAATATGAGTGATTTTCTCCTCTC----------CTATT----------------TTTCTCAATACCTTTTCTCTATTATCTCCT----TTTTTAAATAAG---CAAGTATATATTGTTCTAAACTGAAGGTAAATGATCATGAGTAGCACTTTCccaggcactgtcctagttgctctgcatacatcatctcatttaatcctcacaac-agtgaatggggtcgatttcattacagccgcatttaccagacaaggaaatggttttcaaggttaagtagccttct-catgacacagAATGTGACTAAGAGTTTTCTT--ATTCCATGGCTCACATTAAATGTGCTCTGTGAATATCAGTGAGAAGTAATAAAGCACTGACTGGATCTTCTTGCCCACCTGGTCCTAAAAGAAATGATGGGGAATCTATGCAGTCCCAAGTTAAAAATGGGATCTGAACTGAGCTGCCACAGCATGCTGAATAGGTGGAGTCCAGGCCAACTAAGTGCTGCATGGAACTTAAAGGCTCCAGAGGGAAAGCAATCAGGAAGGCACTTCCACAGGCACATCGGTGACAACTTCTGGGGATTCTTACCT s mm5.chr3 59219095 557 - 160575607 TGGAAAG------TAACGAGGCACTCACAACACTGTACTGAGCGGCCGAGTGGTGAGGGCAGGGCTGCCTCTCTCCTGTTACAAGATCAGCGACG----------------TTTCCTGTTCTCCATTTTCTCGTTTCCCCT-CAGTTTTTAGATTAGCACCAAGTACATGGCACTTGAAGATGAAGATGAATGAGGCCGGTGA----------AGGGCCTGTCCTCACAGCTCTCCTCGAGTCACCTCACCTGGACTCCTCCTCGACTGAATGAGGTTGATTTCATTACAGCCACACTTACCAGAGGAGGAAATGGTCTTCAAGGTTAAGTAACTTTCTCCATGACACCGAACATGACTAATGGCTTTCCCCGGCGCCGTGGCTTG---------------GTGAATCTCCGAGATAAGTGATAAATTGTCCATCTG-CCTTGTAGCCTAGCTTGCTCTAAAGGAAATGGTGGGGCACTCAGAGAGCCCGAAGTGTCCAGGGGAACCTAAA---------------------------------CCAGGCCA-------GCTTCAAG--ACATACAGTCTCCGGATAGCAAAGGGCACAAAAGGTGTTAAAGCCAACACATTGGTGACTGCAAC-GGGGAGTCTCAACT s rn3.chr2 61774135 509 - 258222147 TGGAAAG------TAACAAGGCACTCACAATCCTGAACTGAGCTGCTGAGTGTCGAGGGCAGGGCTGTCTCTCACCTGTT----------ACAAGAACACTGACAGCGATGTCTCCTGTTCTCCATTTTCTCGTTTCCCCTCCAGCTTTTAAATTAG---CAAGTACATGGCACTTGAAGATGAAGATGAATGGGGCCGGTGAA---------GGGCCCTGCCCTCATAGCTTTGCAAGCGTCACCTCACCTGCACTCGTCCTCGACTGAATGAGGTCGATTTCATTACAGCCACACTTACCAGAGGAGGAAATGGTCTTCAAGGTTAAGTAACTTTCTCCATGACACCGAACATGACTAATGGCTTTCCCAGGCACCGTGGCTTA---------------GTGAATCTCCACGATAAGTGATAAAGCGTCCATCTG------------------CCCTGAAGGAAACGGTGGGGGACCCAGAGAGCCCAGGGTGTCTAAGGGAACCTAAA---------------------------------CCAAGCCA-------GCTTCAAG--ACACACCACCTCCAG-----------------------------------AACGGTGACTGCATCTGGGG--TCTCAACT a score=0.0 s hg17.chr13_random 145330 16 + 186858 GTCAGCCTTCAGCCAA a score=1296.0 s hg17.chr13_random 145330 6 + 186858 GTCAGC s panTro1.chr1 116715765 6 + 229575298 GTCAGC s mm5.chr3 59219652 6 - 160575607 GTGAGC a score=955.0 s hg17.chr13_random 145336 10 + 186858 CTTCAGCCAA s panTro1.chr1 116715771 10 + 229575298 CTTCAGCCAA a score=35951.0 s hg17.chr13_random 145346 283 + 186858 GGACGGACAGGAAATG-GCATGGGCTAAAA---GATCCTTTGTTTGACCTCTTTCCAGATCAGGTAACAGGAAAACACAACACTTGAACC-TTTTCAATAAGGacagccagcacttactgagccccagccaggtaactgacactgttccaagtactctgcttgtataaccagctttaaccttgcaacagccctctgaggtaaatactcctagtgacctcattttacggatgcagaacctgaggtaaggagttagggagtaaatgaagctggctaaagacacTTGCACT s panTro1.chr1 116715781 285 + 229575298 GGAAGGACAGGAAGTGAGCATGGGCTAAAA---GATCCTTTGTTTGACCTCTTTCCAGATCAGGTGACAGGAAAACACAACACTTGAACCCTTTTCAATGAGGacagccagcacttactgagccccagccaggtaactgacactgttccaagtactctgcttgtataatcagctttaaccttgcaacagccctctgaggcaaatactcctagtgacctcactttacggatgcagaacctgaggcaaggagttaggGAGTAAATGAAGCTGGCTAAAGACACTTGCACT s rn3.chr2 61774644 260 - 258222147 GGGAGAAGCGGAAGTG-CTATAAACTACAAACTGATCCTTGGTTAGAGC-CCTTCCAGGTCAGGGCACAGGTAGACACA----------C--------TCATGTGAGCTCGC-CTCGCCGAGCCCT-GAGGAGTATGTGACACTGTTCTACATGCTCTGCACAGATGA----CTTAACCCTCACAGCAA-GTTATGGGTTACACACACTTGGTGGTGGTACAGTGCAGAGGCAGAGCCTGAGGCAAGGA-CTGGAGGGTGAGCAAGTGGGGCTGAAGGCACTTGCACT a score=301592.0 s hg17.chr13_random 145629 3337 + 186858 ggccaggcacagtggctcatgcctgtaatcccagcactttgTGctggccaacatggtgaatccccagctctactaaaaatacaaaaattagctgggtgtggtggcgcacacctgtagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggagctggaggttgcagtgagccaagattgtgccactgcactccagcctggtgaaagagtgagactacgtctcaaaaaaaaaaaaaaacaaa--aaaaaaaCTAAGCATCAGTCAATAAATCAGACAAAGAACAAGTTAAATTCAAAGAAAGAAAAAGGAAAAACATAACAAACAAATGAAATACAAAAGAAACACACAATAGAATCAGCCAAGCTAAAACTTGTGGtttttttggttttcagatagggtctcattccgttgcccaggctggagtgtagtggctcaatcacagcttagtacagcctcccccttacaggctcaagcgatcctcccacctttgcctctcaaagtgctgggattacaggtatgagccaccatgccctgctaaAACCTGGTTCTTTAAAAATACATTATAAAATTCACAGACCTTTAGCAAGATTTGTCAAGAAAAAGCATTCAAAAAACAATCTTGCACAGGAGGACTGTACTACAGATAGAAAGACTCTGAAAGGAAGTCATAACTTGCAggccaagaatgatggctcacgcttgtaatcccagcactttgggagaccgaagtgggaggaatgctcaaattcaggagtttgagaccagcctgggcaacatggcaaaaccccgtctctaccaaaaatacaaaaattagctgggcatggtggcacgtgcctgtggtcccagctacttgggaggctgaagcaagagggtggcttgagcctgggaggtggaggctgcagtgagccatgattgcaccactgtactccagcctgggcaacagagtgagaccctgtctcaaataaacaaaTTCATAATGTAAAattatgaatacctttatgccaacagactttaaagcatagatgacaaatctttttctttttttttttt-------gagacaaggtctcattctgtcgctcaggctggagtgcagtggcacaatcacagctcactgcagtctcgaccttccaggctcaaatgatcctcccacctcagcatcccaagtagctcacactacaggcacccaccaccacaccaagctaatttttatttttttt-gtagagatggagtctcactatattgcccaggctggtcttgaactactgtagtcaagtggtcctcccacctgagcctcccaaagtgctgggattacaagcataagccaccatacttggtgagatatgaatttctaggaaaaaaaatcaaaattgactcaaaaagtagaaaaaaaacttacatagattaaatatattgaatcagtaatgaaaaaacttcccataaagaaatttccaggcccaagtgccttcaccaaa-aagttccatgaaacatacaagagaaacaaaccaaccaaccaaacaaa--aaaaaaaactctgccaccaacacaaacagagaataaaaaaagaagactccccagttcattttacaaggttaaaataaaaataaccttgatatcaaaacccaacaaggcaagtgcaagaaaaaatatttacaggccatcattattcaACGTGGATCAGCAATTATTTTTAAGAAGTACTggccaggtgtggtgctcatgcctataatcctagtattttgggaggcccgagtgagaggatggcctgagctcaggagtttgagaccagcctgggcaacaaggcaaaatcccgtctttataaaaaatacaaaaattagctgggcatggcagcacacctatagacccagctatttgggaggctgaggtgggaggatcacttgagcctagcaggttgagaatgcagtgatccctgatcatgccactgtgctccagcctgggcaacagagtgagaccctgtctcaaaacaacaacagaaaGATATGCTGACCACCTGTGATGCTGGCCAGgatggtgtatgcatgctacggcctgtcatttccactgatcacaatttgaaactctggacaaaatataaataacaatgacccaagtactctgaaaagtaaccagcagacaggttgggaaacgtcaaaacctgaagaaTTATCTGGATGGCGGTGGTgagagatcatattctgggtcataaaacaaaccctaaagttaaacaattaaaattcagttaattattttctctgatgacagaattaaactaggaatctagaacatttctagaacatccccaaatatgagaagttaaatggcatacttctaaatggcccctaggtcaaagagagtatcttaagacaaatcggaaaacagtttgaacttaataaatatgacatcatcttatcaaaatatgtgcttacagggcaatttatagcactaaattatgagaaatgaagcatcaaatcaataatgtaagcatttactttaagtaaaaaaagaaccaaataaactcaaatcaggcataagaaaaacagactagatcagtaatatttaaacaaaaacagtaaaggaaaaaaattcaacgaaatccaaagttggttctttgcaggggtggtgggaggtggaaatcaattaaatgaggaagcctctagcagactgacaaaggaagaagagaaaacgcaaattgccaataccagaaatgaaaggaatattattacaaatcctgtagacactagaaggctataatggatactacaaaaacaaaacaaacaactatatgcttctaaattctacaaattacatgaaatagatcaattccttgaaagacagactaccaaaactcaaggagaaacagacagcttgaatacccctgtatttattaaagaaaCAGaagtggcacagcactttggaagacaatttggcaggttctgataaagtcaaatgtaaatggaccatgtgactcagcaatcctacccttaggcatttgcacaagtgaaatgaaaaactatgctaagacaaaaagcactttgtgaattccaatccacttataatttaccaaaaagtgaaaatagtccatattcctccaatgacaaaccaataagcaaaccatgtagtatttatacaatggattactatttggcaataaaaaggaataactgttgatacagtatatgaaagtagccagactcaaaaggctacatcctgaacgattccatttgtataaaattctgaaaaaaaagcaatgctagaggaacacagatcagtgattgccag---tttacaatggaaggttttactataaagggcaaggtaatttttggagtgatcatata s panTro1.chr1 116716066 3348 + 229575298 ggccaggcacagtggctcatgcctgtaatccgagcactttgTGctggccaacatggtgaatccccagctctactaaaaatacaaaaattacctgggtgtggtggcacaaacctatagtcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggagctggaggttgcagtgagccaagattgtgccacagcactccagcctggtgaaagagtgagactacgtctcaaaaaaaaaaaaaaa---accaaaaaaCCTAAGCATCAGTCAATAAATCAGACAAAGAACAAGTTAAATTCAAAGAAAGAAAAAGGAAAAACATAACAAACAAATGAAATACAAAAGAAACACACAATAGAATCAGCCAAGCTAAAACTTGTGttttttttggttttcagatagggtctcattctgttgcccaggctggagtgtagtggctcaattacagcttagtacagcctcccccttacaggctcaagcgatcctcccacctttgcctctcaaagtgctgggattacaggtatgagccaccatgccctgctaaAACCtggttcttaaaaaatacattataaaattcacagacctttagcaagatttgtcaagaaaaagcattcaaaaaacaatcttgcacaggaggactgtactacagatagaaagactctgaaagaaagtcataacttgcaggccaagaacgatggctcgcacctgtaatcccagcactttgggagaccgaagtgggaggaatgctcaaattcaggagtttgagaccagcctgggcaacatggcaaaaccccgtctctaccaaaaatacaaaaattagctgggcatggtggcacgtgcctgtggtcccagctacttgggaggctgaagcaagagggtggcttgagcctgggaggtggaggctgcagtgagccgtgattgcaccactgtactccagcctgggcaacagagtgagaccctgtctcaaataaacaaattcataatgtaaaattatgaatacctttatgccaacagactttaaagcatagatgacaaatctttttttttttttttttttttttgtgagacaagatctcattctgtcgctcaggctggagtgcagtggcacaatcacagctcactgcagtctcgcccttccaggctcaaatgatcctcccacctcagcatcccaagtagctcacactacaggcactcaccaccacaccaagctaatttttatttttttttgtagagatggagtctcactatattgcccaggctggtcttgaactactgtagtcaagtggtcctcccacctgagcctcccaaagtgctgggattacaagcataagccaccatacttggtgagatatgaatttctaggaaaaaaaatcaaaattgactcaaaaagtagaaaaaaaacttacgtagattaaatatattgcatcagtaatgaaaaaacttcccataaagaaatttccaggcccgagtgccttcaccaaagaagttccatgaaacatacaagagaaacaaaccaaccaaccaaacaaacaaaaaaaaactctgccaccaacacaaacagagaataaaaaaagaagactcccgaattcattttacaaggttaaaataaaaataaccttgatatcaaaacccaacaaggcaagtgcaagagaaaatatttacaggccatcattattcaacgtggatcaacaatTATTTTTAAGATGTACTggccaggtgtggtggtcatgcctataatcctagtattttgggaggcccgag--agaggatggcctgagctcaggagtttgagaccagcctgggcaacaaggcaaaatcacgtctttataaaaaatacaaaaattagctgggcatggcagcacacctatagacccagctattcgggaggctgaggtgggaggatcacttgagcctagcaggttgagaatgcagtgatccctgatcatgccactgtgctccagcctgggcaacagagtgagaccctgtctcaaaacaacaacagaaaGATATGCTGACCGCCTGTGATGctggtcaggatggcgtatgcatgctacggcctgtcatttccactgatcacaatttgaaactctggacaaaatataaatagcaatgacccaagtactctgaaaagtaaccagcagacaggttgggaaacgtcaaaacctgaagaaTTATCTGGATGGTGGTGGTgagagatcatattctgggtcataaaacaaaccctaaagttaaacaattaaaattcagtgaattattttctctgatgacagaattaaactaggaatctagaacatttctagaacatccccaaatatgagaagttaaatggcgtacttctaaatggcccataggtcaaagagagtatcttaagacaaattggaaaacagtttgaacttaataaatatgacatcatcttatcaaaatatgtgcttacagggcaatttatagcactaaattatgagaaatgaagcatcaaatcaataatgtaagcatttactttaagtaaaaaaagaaccaaataaactcaaatcaggcataagaaaaacagactaaatcagtaatatttaaacaaaaacagtaaaggaaaaaaattcaatgaaatccaaagttggttctttgcaagggtggtgggaggtggaagtcaatcaaatgaggaagcctctagcagactgacaaaggaagaagagaaaacacaaattgccaataccagaaatgaaaggaatattattacaaatcctgtagacactagaaggctagaatggacactacaaaaacaaaacaaacaactatatgcttctaaattctacaaattaggtgaaatagatcaattccttgaaagacagactaccgaaactcaagaagaaacagacagcttgaatacccctgtatttattaaagaaaCAGaagtggcacagcactttggaagacaatttggcaggttctgataaagtcaaacgtacatggaccatgtgactcggcaatcctacccttaggcatttgcacaagtgaaatgaaaacctatgctcagacaaaaagcactttgtgaattccaatccacttataatttatcaaaaagtgaaaatagtccatattcctccaatgacaaaccaataagcaaaccatgtagtatttatacaatggattactatttggcaattaaaaggaataactgttgatacagtatatgaaagtagccagactcaaaaggctacatcctgaatgattccatttgtataaaattctgaaaaaaaagcaatgctagaggaacacagatcagttattgccagaagtttacaatggaaggttttactataaagggcaaggtaatttttggagtgatcatata a score=11649.0 s hg17.chr13_random 148966 68 + 186858 attttgtaATCTACCAAAAACAAACATGataaatgggcagataagtaaagttcatggattggaaagtt s panTro1.chr1 116719414 68 + 229575298 attttgtaATCTACCAAAAACAAACATaataaatgggcagataagtaaagttcatggattggaaagtt s canFam1.chr28 4352951 64 - 42450431 ATTTTAGGATGTACTCA----AGACATAAGACATGGGAAGATAAATGAAGCTCAAGGATTGGAATATT a score=2856.0 s hg17.chr13_random 149034 20 + 186858 caatattgcaaaggtctccc s panTro1.chr1 116719482 20 + 229575298 caatattgcaaaggtctccc s rn3.chr1 74680011 19 - 268121971 CAATAAT-CTGAAGTCACTT s canFam1.chr28 4353015 15 - 42450431 CGATA-----AAGTTCTCCC a score=20022.0 s hg17.chr13_random 149054 64 + 186858 aaaaatgacctatcaatttaatcccagtggaaattccaatcagttttgtgaaggctgctaagtc s panTro1.chr1 116719502 64 + 229575298 aaaaatgacctatcaatttaatcccagtggaaattccaatcagttttgtgaaggctgctaagtc s mm5.chr7 11623653 55 - 133051633 AAAATTGACC------TTTAATGGCCTTGAGAATCCCAAAC---TTTGTGAAAACTGATGAATC s rn3.chr1 74680031 55 - 268121971 AAAATTGACC------TTTAATGACCTTCATAATCCCAAAC---TTTGTGAAAATTAATGAATC s canFam1.chr28 4353030 64 - 42450431 CAGGATGAACTATTGATTTAATCCCAATGGAAAACCTAACAACATTTGTAGGAAATATAAATTC a score=47262.0 s hg17.chr13_random 149118 224 + 186858 aactctaaaat---------GGCCAAGAATAGACAAGATCACCGGAGAGGAAGC-AGGGAGGTGGACACTAGTATCTTCTGATTGATGAGTGAAATCATTAGAAGGCCAGCAAAAATA-CAAGTAAGC--CAGAATTTCTAAAGCACCACAAAAGAACACTAGTTAGTAGT---GCA-----TATAGGTATCTCCCAAA------TTTGTTGTAAACATAGGCCTTTAAAAAA-TATTAGAAACTGATATTT s panTro1.chr1 116719566 225 + 229575298 aactctaaaat---------GGCCAAGAATAGACAAGATCACCGGAGAGGAAGC-AGGGAGGTGGACACAAATATCTTCTGATTGATGAGTGAAATCATTAGAAGGCCAGCAAAAATA-CAAGTAAGC--CAGAATTTCTAAAGCACCACAAAAGAACACTAGTTAGTAGT---GCA-----TAAAGGTATCTCCTAAA------TTTGTTGTAAACATAGGCCTTTAAAAAAATATTAGAAACTGATATTT s mm5.chr7 11623708 234 - 133051633 AATTGTAAAATTCAGCAAAAGACCAAGAATGGCCAAGATCCAGGGAGAGGAAGCAAGAAAGGTTGATAGAAA---ATTTTGTTTCATGAATGATGTAAGTAAAAGGCCAACAAAATTAGCATATACTCTTCCGAAATCCCAAAGCACCACACAAAACAGCCATATGCATGT---GC--------TAAACATTCCCTAGGGGGAGCTTTAT--AAAGTATACACTTTTTAATA--TACTCGAAGTTGACTTTT s rn3.chr1 74680086 230 - 268121971 AATTCTAAAATTGTGCAAGAGACCAAGAATGGCCAAGATCAAGGGAGAGGAAGCAAGAAAGTTTAATAGAAA---TGTTTGTTTAGTGAATGAAGTAAGTAAAAGGCCAACAGAATTAGCATATACTCTTCAGAAATCCCAAAGCACC-CCCAAAACAGCCATATGCATGTTAAGCATTCCCTAGGGGGAT--------------TTTAT--AAATTATACAATTTTTAATA--TACTAGAAGTTGACTTTT a score=4845.0 s hg17.chr13_random 149342 35 + 186858 AAAGAGATATAAACTCATATTAAGCTTTTAAAAAA s panTro1.chr1 116719791 35 + 229575298 AAAGAGATATAAACTCATATTAAGCTTTTAAAAAA s rn3.chr1 74680316 34 - 268121971 -AAATAATATAAGCTCATAGGAAGGAAGGAAGGAA a score=1421.0 s hg17.chr13_random 149377 6 + 186858 TTCTAA s panTro1.chr1 116719826 6 + 229575298 TTCTAA s rn3.chr1 74680497 6 - 268121971 CTCTAA a score=65056.0 s hg17.chr13_random 149383 285 + 186858 GCAAGGGCCTCACCTAATT-----TCAT-----------AAAAGTTTGCGTAGA-------------------------ACCAACCATTGCTGCCAACGATGTG-CTGCCCTGAGATGTGAGGATCCCAGTGGTCCCTCTGGGTCAACAGCAGCTACCACGGCTGAGCCCAAACTCTGATACATTATCTATCTACAATCATTATTTTTAACAATTTATATCAATGCTACCCATAAGGCACA-----GAGAAGCAGAAATGTTTATGTGGCCTCCTGCCAAAAACAATCACTT----------GCACTTATTTCTAG--TACTCCAGAAGACAGTAATAGAA-GTT s panTro1.chr1 116719832 285 + 229575298 GCAAGGGCCTCACCTAATT-----TCAT-----------AAAAGGTTGCGTAGA-------------------------ACCAACCATTGCTGCAAACGATGTG-CTGCCCTGAGATGTGAGGATCCCAGTGGTCCCTCTGGGTCAATAGCAGCTACCGCAGCTGAGCCCAAACTCTGATACATTATCTATCTACAATCATTATTTTTAACAATTTATATCAATGCTACCCATAAGGCACA-----GAGAAGCAGAAATGTTTATGTGGCCTCCTGCCAAAAACAATCACTT----------GCACTTATTTCTAA--TACTCCAGAAGACAGTAATAGAA-GTT s mm5.chr7 11624729 311 - 133051633 GCACAAGCTTCACCT-----------GT-----------ACAGCGTTGAGTGGGCTCTCAGATTGGAGCTCTGGCTCCTAGCAACCACGTCTGCATGTGATGGACCCGCCCAGGGA---ACGGATCTCAGGGCCCTTTCCTTTTCCACTGTAGTCA--GTGACTGAGCCCACAC-CTGACACATCCGCTATGTATGGTCATTGTTTTCAACAA--TGTGTCAACGTTACCTATAAATCACAGAGAGGAGAGGCAGGGATGTTTCCATGGCCTTCTGCCAAAAGCAATCACTCCAGGCTGCTGGCAC--ACTGCCAGGCGACTCCAGGAGGTGGCATTACAA--TG s rn3.chr1 74680503 299 - 268121971 ACACAATCCTCACCTACTTCTACATCATCGAGTGGGCTAACAGATTGGAGTTCT------------------GGCTCCTAGCAACCATGTCTGCATATGATGTACCTACCCTGGGA---ACAGATCTCAGGGCCCTTTCCTTTTCAA---------------CTAAGCCCAGGC-CTGACACATCCTCTATTTATGGTCATTGTTTTTAACAG--TGTGTCAACTCTACCTATATATCACA-----GAGAGGCAGGGATGTTTACTTGGCCTTCTGCCAAAAGCAATCACTCCAGACTGTTTGCAC--ACTGCCAGGCGACTCCAGGAGATGGCATTACAATGTT a score=2833.0 s hg17.chr13_random 149668 11 + 186858 TTTCAATTTAG s panTro1.chr1 116720117 11 + 229575298 TTTCAATTTAG s mm5.chr7 11625040 11 - 133051633 TTTTGGTTTGG s rn3.chr1 74680932 11 - 268121971 TTTTAAAACAG a score=4630.0 s hg17.chr13_random 149679 18 + 186858 AAAAACATTTACAGCAAA----- s panTro1.chr1 116720128 18 + 229575298 AAAAACATTTACAGCAAA----- s mm5.chr7 11625178 18 - 133051633 AAAAACAGTTTTAGAAAA----- s rn3.chr1 74680943 23 - 268121971 AAAAACATATTCAAAAAAAGATG a score=58005.0 s hg17.chr13_random 149697 199 + 186858 GAAAAAAATCTCT-GTAAACTTCCTGCTTAACCAATCAAGTGAATTGTGATGAG----CCATATAAATTCATTTAGCCACCTTATGA---------------AAGACTTAATCCAAAGTCACTTCTAACTTCTAGAA--GAGCTAATGTATTA--TAATCACAGTTGTGAAAGACT-CAAAGGCCAGA-ACTGTCAAGGTGTGGTCTACATCCTAAGTCCAGAAA s panTro1.chr1 116720146 200 + 229575298 GAAGAAAATCTCTTGTAAACTTCCTGCTTAACCAATCTAGTGAATTGTGATGAG----CCATATAAATTCATTTAGCCACCTTATGA---------------AAGACTTAATCCAAAGTCACTTCTAACTTCTAGAA--GAGCTAATGTATTA--TAATCACAGTTGTGAAAGACT-CAAAGGCCAGA-AATGTCAAGGTGTGGTCTATATCCTAAGTCCAGAAA s mm5.chr7 11625196 203 - 133051633 GACAAAAATCTCC---------CTTACCTAATAAAGTCGGTAAAATGTGCTGAG-----CACATAAATTTACCTGGACATCTCGTGAAGATGGCTGGGAGGGAACATTTAGTCCAACGTCACATCAAACTCGTCGAATGGAGCTAACATGCTGGCTCATCTC--------TAGACTGGAAAGGCCAGACACCACTGGATTTTTCTCCCTCTCAAAGGCTCAGAAA s rn3.chr1 74680966 202 - 268121971 AAAAAAAATCTCC---------CTTACCTAATAAAGTCAGTGAAGTGTGCTACG----CTATATAAATTTACCTGGACATCTTGTGAAAACGGCTAGAAGGGAACATTTAGTCCAACATCACACCAAACTTGTCAAGTGGAACTAACATG-----TCATCACAGTTCTG---GACTCAAAAGGCCAGA-AACTACCAGCTTTTCTTCCTATGAAGGGTTCAG-AA s canFam1.chr28 4353955 203 - 42450431 ctaaaaaat-------------tttaataaataaatCTAGTGTATTGTGAGGAGGGAGCAACAT--ATTCATCTGGATAATTTATGAAAATGGCCATAAGGAAGCATTAGGCCCAAAGTCACATCTAACTTTTACAACTGAGCTAATGCA-----CCATCACAGTGCTGAAAGACA-CAGAGGCCAGA-GATTTCAAGGTTCAGTCTGCATCTGAAATCCAGAAA a score=43271.0 s hg17.chr13_random 149896 123 + 186858 AAAAACCAAAA-GCAACATGTACAGGCCAAATGATTG---CCAATTTCTTCTGCCTA---CGTCATCTTTCTTCACTATAGCCTGAAATTACA----TTTCATGTTTGACAAT---TCTCAGCAAGGAGACAAAACA s panTro1.chr1 116720346 124 + 229575298 AAAAAACAAAAAGCAACATGTACAGGCCAAATGATTG---CCAATTTCTTCTGCCTA---CATCATCTTTCTTCACTATAGCCTGAAATTACA----TTTCATGTTTGACAAT---TCTCAGCAAGGAGACAAAACA s mm5.chr7 11625399 117 - 133051633 AAAAGGCAAAG--------ATGCAGGGCCATAGATGG-------TTTCTCCTGCATATCCTGTCACCTTT-GTCACTAGAGCTTGAAGCTATG----TATTATAATTGACAGTGTCCCTCAACAAAGAGTCAAAACT s rn3.chr1 74681168 127 - 268121971 AAAAGGCAAAG--CAAAATGCACAGGGCCGAAGATGG-------TTTCTCCTGCACATCCTGTCACCTTT-GTCGCTAGAGCTTGAGGCTATGTCTTTCTTATGTTTGTCAGTGTCCCTCAGCAAAGAGACAAAACT s canFam1.chr28 4354331 132 - 42450431 AAAAAAAAAAG-GAAAAATATACAACCCAAATGATTAATGCTTTCTTCTCCTGCATCCTGAATCTTGTTTGCTCACAAAAGCCTCAAATTACT----TTTTATGTTTGCCAGCACCCCTCGGCAATGAGATAAAACA a score=-485.0 s hg17.chr13_random 150019 4 + 186858 AGC-T s panTro1.chr1 116720470 4 + 229575298 AGC-T s mm5.chr7 11625516 5 - 133051633 CACAT s rn3.chr1 74681295 5 - 268121971 AACAT a score=9182.0 s hg17.chr13_random 150023 25 + 186858 TATGAGTAAAA-----TAATAGAAAGCAGA s panTro1.chr1 116720474 25 + 229575298 TATGAGTAAAA-----TAATAGAAAGCAGA s mm5.chr7 11625521 30 - 133051633 AATGAGTTAAAACCATTAACCAAAAGCACA s rn3.chr1 74681300 30 - 268121971 AATGAGTTAAAACCATTAACCAAAAGCCCA s canFam1.chr28 4357454 25 - 42450431 taaaaataaaa-----taaaaaaaaataaa a score=26387.0 s hg17.chr13_random 150048 141 + 186858 GCCACAG-AGAGGACGAGAG-GCAGGAGTCATCTCCCAAGTCCAAGTTCAACTTCCATATTATTAGACAGGGCCTCAGTGTCTTC-GAACTGCAAGGAATTAATATTGATTGTAGCGTGAGT-AAAACCTATCTTCTACTCATCA s panTro1.chr1 116720499 141 + 229575298 GCCACAG-AGAGGACAAGAG-GCAGGAGTCATCTCCCAAGTCCAAGTTCAACTTCTATATTATTAGACAAGGCCTCAGTGTCTTT-GAACTGCAAGGAATTAATATTGATTGTAGCATGAGT-AAAACCTATCTTCTACTCATCA s mm5.chr7 11625551 118 - 133051633 GTC-----AGAAGGCAAGAG-GTGGCATTC-TTTTCTGAGCCAAATTTCCCCCTTTATACC-----ACAATGTTTCAATATTTT------------GCTCCAGTACTGATTATAGTATTAG---AAAGCTATTCTCTTATCATAA s rn3.chr1 74681330 119 - 268121971 ATC-----AGAAGGCAAGAGCGGGGCACTC-TTTCCTGAGCCAAATTTTCCCCTTTGTAAC-----ACAAGGTTCCAATATTTT------------GCACCAGTATTGATAACAGTATTAG---AAGATTATACTCTTATCATAA s canFam1.chr28 4358729 143 - 42450431 aACACTGTTATGTGCAAGAG-GCAGCAGTTATTGCCTGCACCTGTATTCTTCCCCCATACTTTGAGACCTGGTC-CAGTATCCTCTGAGCTGGAAGGAACCACCATTGACTGGAGGGGTTGCAAAAATCTAAACTCTAGTCATCA a score=2929.0 s hg17.chr13_random 150189 14 + 186858 TGAAAAGTCACAGT s panTro1.chr1 116720640 14 + 229575298 TGAAAAGTCACAGT s mm5.chr7 11625669 14 - 133051633 CACTGTAATACAAT s canFam1.chr28 4358872 14 - 42450431 TGAAAAGTCACAAT a score=10242.0 s hg17.chr13_random 150203 65 + 186858 CGTTTTGTTTAAAGACTCCAGAATTATTATGGGCAGAAACAAGAAGGTTACACAC---CTATCTGGTG s panTro1.chr1 116720654 65 + 229575298 CGTTTTGTTTAAAGACTCCAGAATTATTATAGGCAGAAACAAGAAGGTTCCACAC---CTATTTGGTG s canFam1.chr28 4358886 62 - 42450431 ------AACTTAAAATTCCAGAAGCAGTACGAGCAGAAACAAAAAGGTCATACACCCGCTGTGTGGTG a score=18814.0 s hg17.chr13_random 150268 33 + 186858 AAATGAGGAATCAGGAATGAGCATTCCCAAGAG s panTro1.chr1 116720719 33 + 229575298 AAACGAGGAATCAGGAATGAGCATTCCCAAGAG s mm5.chr7 11625914 33 - 133051633 AAATAAGGAATCTGGAATAAGCAGTCACAAAAG s rn3.chr1 74681674 33 - 268121971 AAATAAGGAATCTGCAATAAGCACTCACAAAAA s canFam1.chr28 4358948 33 - 42450431 AAGCAAGGAACCAGGACCAGGCATTCCAGAAAG a score=11588.0 s hg17.chr13_random 150301 45 + 186858 AATACAATTACAAAAGTAAAATCACCTAGAGTTTTTGGGCTGCTT s panTro1.chr1 116720752 45 + 229575298 AATACAATTACAAAAGTAAAATCACCTAGAGTTTTTGGGCTGCTT s mm5.chr7 11626497 45 - 133051633 AATATAATTTCAGAAGTAAAATCACCTACCTTTTGGGGATGGTTT s rn3.chr1 74681711 41 - 268121971 GATACAGTTTCAGAAGTAA----ACCCTGACTTTGGTGGATGTTT s canFam1.chr28 4358981 38 - 42450431 AATTAAATTACAAAAGTCAAG------GAGATTTGGGAGCAGTA- a score=829.0 s hg17.chr13_random 150346 6 + 186858 AAAAAA- s panTro1.chr1 116720797 6 + 229575298 AAAAAA- s mm5.chr7 11626542 6 - 133051633 TAAAAA- s canFam1.chr28 4359019 6 - 42450431 -AAAGAG a score=1765.0 s hg17.chr13_random 150352 5 + 186858 ---CCCAG s panTro1.chr1 116720803 5 + 229575298 ---CCCAG s mm5.chr7 11626548 5 - 133051633 ---GTTAG s rn3.chr1 74681982 5 - 268121971 ---CTCAG s canFam1.chr28 4359025 8 - 42450431 TCCATCAG a score=2040.0 s hg17.chr13_random 150357 6 + 186858 AAAGAA s panTro1.chr1 116720808 6 + 229575298 AAAGAA s rn3.chr1 74681987 6 - 268121971 ACACAA s canFam1.chr28 4359033 6 - 42450431 AAAGAA a score=6417.0 s hg17.chr13_random 150363 55 + 186858 GTGCCAAATGCGAAAATAATCAAATTCAGTGGA--AAAAC---TCACTTGAAGG------------------------TATCAT s panTro1.chr1 116720814 55 + 229575298 GTGCCAAATGAGAAAATAATCAAATTCAGTGGA--AAAAC---TCACTTGAAGG------------------------TATCAT s mm5.chr7 11626772 60 - 133051633 GTCTCAGACACAAGGATGAAAGAAAACTATGGATGAAAACAGTTCTCTAGAAGC------------------------TATGGT s rn3.chr1 74681993 49 - 268121971 ---------GTATAAAAGAGAAAACTACAAGGG--AAAACAGTTCTCTAGTAGC------------------------CATCGT s canFam1.chr28 4359039 75 - 42450431 ----GAAACTAGAAAATAGTCAAATTCAGTGGA--AAATT---TCATTTACAGGCTTATGGGTCAACCTCAGAGCATTTTTCAT a score=24179.0 s hg17.chr13_random 150418 73 + 186858 GGTCAGCTGG--GTTTCCAC-CCCTTTGTTGCACTTC-AAATCCTGTGTATTCCACAAAGACTTGCTCCTTTCTAAA s panTro1.chr1 116720869 73 + 229575298 GGTCAGCTGG--GTTTCCAC-CCCTTTGTTGCACTTC-AAATCCTGTGTATTCCACAAAGACTTGCTCCTTTCTAAA s mm5.chr7 11626832 76 - 133051633 GGTTGGTTGGCTGGGCTCGC-ATCTGTGACTCACCTCTGAGACATCTGCTGTCTGCAAACCCCAGCTCCTGTTTATA s rn3.chr1 74682042 76 - 268121971 GGTTGGTTGGCTGGGCTCAC-ATCTGTGACTCACCTCAGAGACAGCTGCTGTCTGCAAACCCCAGCTCCTGTTTACA s canFam1.chr28 4359246 74 - 42450431 GGTCAGCTGG--GTTTGCACAACCTTTGACCCACTTC-ATAGCCTTTGTGTTCCTCAAAGAACTGATCCCTTCTAAA a score=600.0 s hg17.chr13_random 150491 1 + 186858 G s panTro1.chr1 116720942 1 + 229575298 G s mm5.chr7 11626908 1 - 133051633 G s rn3.chr1 74682118 1 - 268121971 G a score=19938.0 s hg17.chr13_random 150492 107 + 186858 GCTATGGTTCACGTTCAACAGAACAGCAGCAACCACCATGAGCCTGAGGGCTGGCTAGTCTTTAGTATTCTGCCTTATTC-AA--AGAAATGATCATTTCCCTCATTCCT s panTro1.chr1 116720943 107 + 229575298 GCTATGGTTCACATTCAACAGAATAGCAGCAACCACCATGAGCCTGAGGGCTGGCTAGTCTTTAGTATTCTGCCTTATTC-AA--AGAAAGGATCATTTCCCTCATTCCT s mm5.chr7 11626909 89 - 133051633 ----TGG------CCTAGCAGAGTAGCCCCTTC---------CCTCCGGGTGGGTTAGTCTCT-GTGTTACCTTTCACCC-AACCACAAGGGATTCCTTCCCTTCTCCCT s canFam1.chr28 4360162 108 - 42450431 GTTATGGGTCAGGTCCAAAAGAATAGAGGCAACCACCATTAGCCTGAGGAGCTGGTGGTCCTTAATATTCCACCTGACTCTAA--AGGAATGACACCTCCTTTCCTTCCT a score=5224.0 s hg17.chr13_random 150599 28 + 186858 AAAGATCTCCCAGGTCCATTACAAAAAA s panTro1.chr1 116721050 28 + 229575298 AAAGATCTCCCAGGTCCATTACAAAAAA s canFam1.chr28 4360270 27 - 42450431 TAAGGTCTCCCAGGTCC-TCACAGGAGA a score=37957.0 s hg17.chr13_random 150627 415 + 186858 A-----GGAGCAGCAgccaggcgcagtggctcacacctgtgatcccagcactttgagaggccaaggggggaggatcacctgaggtcgagagttcaagaccagcctggccaacatgatgaaactaaaaatacaaaaaTCagctgggtgtcatggtgtatgcctgtaatcccagctactttggagctgggtaactggcagaggttgaacaatttgcaggtctcagaagacaggaaactgtgggaaagtttgaaattccaagagacttgttgaatggctttgaccaaaatgctgataatgatatggacaatgaaatccatgctgaggcagtctctgatggagatgaggaacttgctgggaactggagcaaaggtgactcttgtcacctttGATAAGATGGTGGTTGAGGAGAGGTCTTGGCAA s panTro1.chr1 116721078 420 + 229575298 AAAAAAGGAGCAGCAgccaggcgcagtggctcacacctgtaatcccagcactttgagaggccaaggggggaggatcacctgaggtcgagagttcaagaccagcctggccaacatgatgaaactaaaaatacaaaaaCCagccgggtgtggtggtgtgtgcctgtaatcccagctactttggagctgggtaactggcagaggttgaacaatttgcaggtctcagaagacaggaaaatgtgggaaagtttgaaattccaagagacttgttgaatggctttgaccaaaatgctgataatgatatggacaatgaaatccatgctgaggcagtctctgatggagatgaggaacttgctgggaactggagcaaaggtgactcttgtcacctttGATAAGATGGTGGTTGAGGAGAGGTCTTGGCAA a score=2932.0 s hg17.chr13_random 151042 23 + 186858 GCGGTGATGTGTGAATGTAGTGA------------------ s panTro1.chr1 116721498 23 + 229575298 GCAGTGATGTGTGAATGTAGTGA------------------ s mm5.chr4 25279640 40 - 154141344 GCTGTGATATGTGAGTGTTCTGGAATG-CCCAAGCTAGATT s rn3.chr5 149705052 41 + 173106704 GTGGTGATATGTGAGTGTGCGGGATTGCCCGAGCTAGAAGC a score=248001.0 s hg17.chr13_random 151065 755 + 186858 GGGGCCTGAAAACGGAACTCAgaga--ggacactgggttttagaggctgaaactacagaaagtccgctgcgttcaaggcctgcttccaccaaaa-tctagcagtgtggcctcaagcaaaccatttcacttctcttggcctcagtttctacatctgcaaaatgggatttataatccctccccagcccacagaattc-agagttatatgagaaggctagaagagctcacctaccaagggactcttttaatgg--caaggtggggaaactgaggcaccgagagggctagggctctgctagctgtcacccagagt----ctgatggacctgcgatgagaaaccagaactcctgcccctagttc-cgccggctttcctca-gGCTGGGCAGTGAGTGCGGTGAGATAAAAAGGGCAAGCCCTCCTGCTCTTTCTCTCTGGACAG-GGGCGGGATGCTGGGTGAAGGGT---GAAAGGAAGAGGCTGGAGAAGGGAGAAAAGCTCCAGCTCACACTAAGTCTGAAATTTTTTAAAATGCGGACTCCGTGGCCCCTCCCTTACCCGCCCCATT-----CCT-------CTCTGAAGTCCTGGTTGTGA-AGGGC-CAAGTCC-----CAAAGTC-TGCTGCTCCGC---CTC-TCTGTG---TGCAGAGCCATGGGGCCTTCACAGGCTGCAGTGGGTCC-CGAGCCCCCA-GGGCTGTGCCCGCTGGTCCTGACCAAGATCGC-----------------GGCTGCCGAGGTCA-------------------GTCCAGCGCCAAGG-----------------------------------GCACAGGGCCA-----GGGCAGGTGGGG-------------------------------------------------CAG-GGCTACCCG s panTro1.chr1 116721521 751 + 229575298 GGGGCCTGAAAATGGAACTCAGAGA--GGACACTGGGTTTTAgaggctgaaactacagaaagtccgctgcgttcaaggcctgcttccaccaaaa-tctagcagtgtggcctcaa----accatttcacttctcttggcctcagtttctacatctgcaaaatgggatttataatcccaccccAGCCcacagaattc-agagttatatgagaaggctagaagagctcacctaccaagggactcttttaatgg--caaggtggggaaactgaggcaccgagagggctagggctctgctagctgtcacccagagt----ctgatggacctgcgatgagaaaccagaactcctgcccctagttc-CCCCGGCTTTCCTCA-GGCTGGGGAGTGAGTGCGGTGAGATAGAAAGGGCAAGCCCTCCTGCTGTTTCTCTCTGGACAG-GGGCGGGATGCTGGGTGAAGGGT---GAAAGGAAGAGGCTGGAGAAGGGAGAAAAGCTCCAGCTCACACTAAGTCTGAAATTTTTTAAAATGCGGACTCCGTGGCCCCTCCCTTACCCGCCCCAAT-----CCT-------CTCTGAAGTCCTGGTTGTGA-GGGGC-CAAGTCC-----CAAAGTC-TGCTGCTCCGC---CTC-TCTGTG---TGCAGAGCCATGGGGCCTTCACAGGCTGCAGTGGGTCC-CGAGCCCCCA-GGGCTGTGCCTGCTGGTCCTGACCAAGATCGC-----------------GGCTGCCGAGGTCA-------------------GTCCAGCGCCAAGG-----------------------------------GCACAGGACCA-----GGGCAGGCGGGG-------------------------------------------------CAG-GGCTACCCG s mm5.chr4 25279680 750 - 154141344 GGGGCTTGTAAACCAAGTCCAGAGGCCAGATACTGGATTGGGGAGTCTCAAACT----AGAGTACACCGGATTCAAAACCTGCCTCTGCTAAAA-CCTTATTGTGTGGCTTCAAGCAAGTCACCTCACATCTCTGGGCCTTAGTTTCCGTATCTGCAGCGT--------------------AGCCCATGGAATTG-AAAGCCAAACGAGAGTGCTAGAAGCA-TCATCAACTAAGGGATAATTTTAATTATTTGATGTGGGGAAACTGAGGCCCGGAGGGAGCAAAGACTCGGCCCGATGTCACACCGGATGTCAGTGATGGTGCCGTAGCTGGAGCCCAGGACTCCTGCTTCTAGTTCACAGTATCTTTCCCCAGGGCAGGTGAATGA--GAGGTGAGAT----GGGGTGAGTTCGGTCTGTCTTGCTGTTTGGACTGAGGGCAAGATACTAGGTAAGGAGT---AGA--------GCTGAAGAA-AGAGGAAGACCCCGGCACGTACCAAGGCTGAGATTAAAAAAAATACAAACCCAGTGATTCCCCCTCCCCCCCGCCCCGT-----CCTGCCCCAACCCTGAAGTCCTGCTAGAGCTAGGGT-CAGGTCCAAGTTCAAGTCT-TGAGAGTCCGCATTTTC-TCCAGGGGCTGCAGATCCAGGAGG-CTGCACAAGCTGCAGTTAGCCTAAGCGCCACCA-GGGGCGCGCCTGCCTATCGTGATC-----CGC-----------------GCCTCCGGACAGCAC---------------TGCTTCAGGCTCCAGTG-----------------------------------GTCCAGGGAAAACTGTACGCGGGTGGGA-------------------------------------------------CAGAAGCTATCCG s rn3.chr5 149705093 807 + 173106704 GGGGCTTGGAAACCAAATCCAGAGGCCAGATACTGGATTGGAGAGTCTCAAACT----AGAACACACAGGATTCAAAGCCTGCCTCTGCTAAAA-CCTTACTGTGCGGCTTCAAGCAAGTCGCCTCACATCTCTGGGCCTTAGTTTCCATATCTGCCCCAT--------------------AGCCCAGGGAATTGAAAAGTCAAACGAGAGTGCTAGGAGTA-TCATCTGCTAAGGGATTATTTTAATTATTTGAGGTGGGGAAACTGAGCCCCGGAGAGAGCAAAGACTCTGCCCGATGTCACACAGGATGCCAGTGAT------------AGAGCCCAGGACTCCTGCTTCTAGTTCACAGTATCTTTCCCCAGGGCAGGTGAATGA--GAGGTGAGAT----GGGGTGAGTTCGTCTG-TCTTGCTGTTTGGACTGAGGGCAAGATACTAGGTAAGGAGT---AGA--------GCTGAAGAA-AGAGGAAGACCCTGGCACGTACCAAGGCTGAGATTAAAAAAAATACAAACCCAGCGATTCCCCCTCCCCCCAACCCCAT-----CCTGCCCCAACCCTGAAGTCCGGCT------AGGGT-CAGGTCCAAGTTCAAGTCTAAGTGAGTCCGCATTTGC-TCCAGGGGCTGCAGATCCAGGAGG-CTGTACAAGCTGCAGTTAGCCTAAGCGCCGCCAGGGGGCGCGCCTGCTCATCGTGATCCAAGCCTCCGGACAGCGCTGCTTCAGGCTCCAGAGGTCCAGGGAGCTTTACGAGGTGGGTGCGGAACAGAAGCTACCCAGACCT-----------------------GCAGGAAACAA-----AAGCAGGTTAGAA-------------------GTGTATTTGCAGGCCTGCGAGTAGGTGGTCAG-AGAGACCCG s canFam1.chr2 17250958 774 - 87725193 GGGGTTTggaaatgggattcagagaccagacactgggttttggagtctgaaaccacagaaggtacactgtgttcaaggcctgcctccaccaaaagccttgctgtgtggcctcaagcaaatcgcttcctatctccgggcctcagtttccattactctaaaatgggaattataatctcagcctagcccggggaatta-agagtcgaatgaaaAGGCTAGAAAGCTCCATCTGCTAAGAGAttattttaattg--------agggaaactgaggcccagagagggcaagggccttgccggatgtcccacagcgagcccgtgagggagctgcaggtggaacccaggactcct---cctagttcacagtaactccccccagGGCTGGCGAAGGC---------------------------------CATTTCTCGCTGGACAAGGGGCCGGAAGTGGGGTCAAGGGTTTCGAAAGGGAGAGGCTGGAGAAGGGAGGGAGGC-CCGGCGCACGCCAAGGCTGAGA-TAAAAAAAATACAAAGCCCGCGATCCCCTccccgcccggccccccaggggcccgccgcgccccTGGAGTC-----------GGGCCGCGGGTCC-----------C-TCCGAGTCCGCGTCCGCGTCCG-----CGCAGACCC----GGCCGGCGCAGGCTGCAGTCGGTCCGCGAGCCGCCAGGGGGCGCGCCTGCCA--CCGGCCCGAGCGCGC------------------CCAGCCGCCGCC--------------------GTCCAGCCCGTGGG---CGCGGGACTCCGGCCAGAAGCTACCCCGACCTGCAGGAAACAA-----AGGCAGGTTAGGGAGGTGGACCCTGAAGGTCCGCGGG------------------------CAG-AGGGGTCCG a score=-1755.0 s hg17.chr13_random 151820 2 + 186858 AA- s panTro1.chr1 116722272 2 + 229575298 AA- s mm5.chr4 25280430 2 - 154141344 GA- s rn3.chr5 149705900 2 + 173106704 GA- s canFam1.chr2 17251732 2 - 87725193 GC- s fr1.chrUn 87129067 2 + 349519338 -AC a score=85236.0 s hg17.chr13_random 151822 82 + 186858 GCGCATAGAGGCTGCTGGTGTCAACGTGACGTCTTCTGGGGCTCCTGGCATCCCTAGGAGTGGAAGCCGCTGATGAAGTCAA s panTro1.chr1 116722274 82 + 229575298 GCGCATAGAGGCTGCTGGTGTCAACGTGACGTCTTCTGGGGCGCCTGGCATCCCTAGGAGTGGAAGCCGCTGATGAAGTCAA s mm5.chr4 25280588 82 - 154141344 GTGTACAGAGGCTGCAGCTGTAAATGCGACGTCTTCTGCGGCGCCTGGTATCCATAGGAGTCAAAGCCACCGATGAAGTCAA s rn3.chr5 149705985 82 + 173106704 GTGTACAGAGGCTGCAGCTGTAAATGCGACGTCTTCTGAGGCGCCTGGTATCCATAGGAGTCAAAGCCACCGATGAAGTCAA s canFam1.chr2 17251814 82 - 87725193 GTGTACAGAGGCTGCAGTTGTAAATGCGACGTCTTCTGGGGCGCCTGGTATCCGTAGGAGTCAAAGCCACCGATGAAGTCAA s fr1.chrUn 87129069 82 + 349519338 GTGTAAAGAGGCTGCAGTTGCAGGTGAGAAGACTTCTGTGGGGGCTGGTAGCCATAGGAGTCAAAGCCACCAATAAAATCAA a score=61187.0 s hg17.chr13_random 151904 61 + 186858 AGCTGCCTC-CTCCTTCAGGAAGACTTTGCTCCCATAGCTGGCGAACAGGAAGCGGAGCAGC s panTro1.chr1 116722356 62 + 229575298 AGCTGCCTCTCTCCTTCAGGAAGACTTTGCTCCCATAGCTGGCGAACAGGAAGCCGAGCAGC s mm5.chr4 25281122 62 - 154141344 AGCTGTCCTCCTCTTCCAGGAATACTTTGCTCACATAACAGGCAAACACGAAGCCGAACAGC s rn3.chr5 149706528 62 + 173106704 AGCTGTCCTCCTCTTCCAGGAATACTTTGCTCACATAACAGGCAAACACGAATCCGAACAGC s canFam1.chr2 17252523 62 - 87725193 AGCTGTCCTCCTCCTCCAGGAACACTTTGCTCACGTAGCAGGCGAACACGAAGCCAAACAGC s fr1.chrUn 87129928 62 + 349519338 AGCTGTCCTCGTCATCCTGGAAGACTTTGCTCACGTAGCAGGCGTACACGAAGCCAAAGAGC a score=110385.0 s hg17.chr13_random 151965 193 + 186858 GCCAGGAGGATCTGC-GGGCGCTGCTGAGGGCTTCTTTGCAGGGACAGTGCAGCAGGCAGCTAGGGA-CAAGACTGCACGGCAGCCCCCCATGGCCAGGGGA-AGTTCAGACCCG-AGTCGCCC-ACTGCCCGG-TGATTCTCCATC--CCTGGATCGGTACAGGGGCAT-TTGGACGCTGTGGGGAAGTCGCGGTCTGGG-G- s panTro1.chr1 116722418 195 + 229575298 GCCAGGAGGATCTGC-GGGCGCTGCTGAGGGCTTCTTTGCAGGGACAGTGCAGCAGGCAGCCAGGGA-CAAGACTGCACGGCAGCCCCCCATGGCCAGGGGA-AGCTCAGAACCGGAGTCGCCC-GCTGCCCGG-CGATTCTCCATC--CCTGGATCGGTACAGGGGCAT-TTGGACGCTGTGGGGAAGTCGCGGTCTAGGTG- s mm5.chr4 25282367 202 - 154141344 GCTAGGAAGATCTGCAGGGCACTACTGAGGGCTTCAATGTAAGGATAATCAAGCAGGCAGCCAGTGACCGAGATGACGTGGTGGTCCTCCAGGGCCAGGCGAGAGTTCAGAACAGGAGTCACCAGGCAGCCTGGACCATTCTCCATCCACCAGGAGCGATGCAGGGATGTGTTGAAGGTCATGATGAAGTCCCGGTCCTGG-G- s rn3.chr5 149707946 202 + 173106704 GCTAGGAAGATCTGCAGGGCACTACTGAGGGCTTCAATGTACGGATAATCAAGCAGGCAGCCAGTGACCGAGATGACATGGTGGTCCTCCAGGGCCAGGCGGGAGTTCAGAACAGGAGTCACCAGGCAGCCTGGACCGTTCTCCATCCACCAGGAGCGATGCAGGGATGTGTTGAAGGTCATGATGAAGTCCCGGTCCTGG-G- s canFam1.chr2 17253280 203 - 87725193 GCCAGGAAGATCTGCAGGGCACTGCTGAGTGCTTCGATGTAGGGATAGTCAAGCAGGCAGCCGGTGACAGAGATGACATGATGGTCTTCCAGGGCCAGGCGGGAGTTCAGGACAGGGGTCACCAGGCAGCCTGGCCCATTCTCCATCCACCAGGAGCGATGCAGGGACGTGTTGAAGGTCATGATGAAGTCCCGGTCCTGG-GG a score=639.0 s hg17.chr13_random 152158 7 + 186858 ATATTGG s panTro1.chr1 116722613 7 + 229575298 ATATTGG s canFam1.chr2 17253483 7 - 87725193 GCAGAGG a score=7393.0 s hg17.chr13_random 152165 9 + 186858 GTCCAGCCT s panTro1.chr1 116722620 9 + 229575298 GTCCAGCCT s mm5.chr4 25285793 9 - 154141344 GTCCAACTT s rn3.chr5 149711305 9 + 173106704 GTCCAACCT s canFam1.chr2 17254753 9 - 87725193 GTCCAACCT a score=40043.0 s hg17.chr13_random 152174 57 + 186858 TCGGGTAGAAGCAGGTGATAAACGCACTCAGGCCAGCCCGGAGCGTC---AGCCACACTG s panTro1.chr1 116722629 57 + 229575298 TCGGGTAGAAGCAGGTGATAAACGCACTCAGGCCAGCCCGGAGCGTC---AGCCACACTG s mm5.chr4 25285802 57 - 154141344 CCAGGTAGAAGCAGATGATGAAGGCGTTCCAGCCAACCCAGAGTACA---AGCCAGGCTG s rn3.chr5 149711314 57 + 173106704 CCAGGTAGAAGCAGATGATGAAGGCATTCCAGCCGACCCAGAGTACC---AGCCAGGCTG s canFam1.chr2 17254762 57 - 87725193 CCAGGTAGAAGCAGATGATAAATGCATTCCAGCCGACCCAGAGCACC---AGCCAGGCTG s fr1.chrUn 87130835 54 + 349519338 TCAAGGAGGAACTGATGATGTACTTA------CAAATATGAGGTATCTGAAACGAAACTG a score=40.0 s hg17.chr13_random 152231 1 + 186858 --C s fr1.chrUn 87130889 3 + 349519338 TAC a score=100.0 s hg17.chr13_random 152231 1 + 186858 C s rn3.chr5 149711371 1 + 173106704 C a score=300.0 s hg17.chr13_random 152231 1 + 186858 C s panTro1.chr1 116722686 1 + 229575298 C s mm5.chr4 25287602 1 - 154141344 C a score=100.0 s hg17.chr13_random 152231 1 + 186858 C s canFam1.chr2 17254819 1 - 87725193 C a score=111097.0 s hg17.chr13_random 152232 121 + 186858 GGTGCCCACGATGCCCAGGGTGAGCGCCACGAGGCGCAGGAAATTGGCTAGGGTGGGAGCTCACTGGTAGGTGGCCCTGGAAGTCAAAGATCTGCTGCTCCAGCGCTGCCACCAGTTGCAG s panTro1.chr1 116722687 121 + 229575298 GGTGCCCACGATGCCCAGGGTGAGCGCCACGAGGCGCAGGAAATTGGCTAGGGTGGGAGCTCACTGGTAGGCGGCCCTGGAAGTCAAAGATCTGCTGCTCCAGCGCTGCCACCAGTTGCAG s mm5.chr4 25287603 117 - 154141344 GGTACCAAAGATGCCCAGGATGACAGCCATGATATGCAGGAAGTTGGCCAGGATAGGAGCCCACTGGTA----GCCCAGGAAATCGAAGATCTGCCGCTGGAGTGCAGCCACCTGTAGAAG s rn3.chr5 149712851 117 + 173106704 GGTGCCAAAGATGCCCAGGATGACAGCCATGATATGCAGGAAGTTGGCCAGGATGGGAGCCCACTGGTA----GCCCAGGAAATCGAAGATCTGCCGCTGGAGGGCAGCCACCTGTAGAAG s canFam1.chr2 17256271 117 - 87725193 GGTGCCAAAGATGCCCAGGATGACTGCCATGATGTGCAGGAAGTTGGCTAAGATAGGAGCCCACTGGTA----GCCCAAGAAGTCAAAGATCTGCCGCTCCAGCGCAGCTACCTGTGGGAA s fr1.chrUn 87130892 112 + 349519338 CGTGCCAAACATGCCCAGGATGACAGCCATAATGTGCAGGAAGTTGGCTAAGATGGGGGCCCACTGGTA----GCCTAGAAAGTCAAAGACCTGTCTTTGAAGGGCTGCCACCTAG----- a score=1791.0 s hg17.chr13_random 152353 7 + 186858 GCAGCAG s panTro1.chr1 116722808 7 + 229575298 GCAGCAG s canFam1.chr2 17256388 7 - 87725193 AAAGCAG s fr1.chrUn 87131004 7 + 349519338 AGGACAG a score=3257.0 s hg17.chr13_random 152360 24 + 186858 AAGGCGAGGAGCGTGTGGCACCAG s panTro1.chr1 116722815 24 + 229575298 AAGGCGAGGAGCGTGTGGCACCCG s fr1.chrUn 87131011 24 + 349519338 GAGGAAAAGGTCACATGTCATCCG a score=104523.0 s hg17.chr13_random 152384 1153 + 186858 CGTACTCGCCCATTGCTCCACGGACCTCTTTATCCAACCTTCAATAATTATTCTTTTTATTATATTCAATGATTATTCTACTTTTCATAGAGAGCAGCTGTCAGTCCAATAACACACTTAACAAATGATATACCTAGTCCTCAAGGTTAACAAACACATGAAGACCAGCCCAACCCTGAAAATCAGTTTGCAAACCTTCGCTATGTCTGATGCCATTCCTAAAAATTTTTAGGGACAAGTTTTGTTTGTGGTAAACAACATAAGGTGGGGTGTGTGCTGAGCCCAAAGCtgaccaattgctcacagttactcataactacccattgacttgattttatcaaacttcagacagtcttgtctcctctcctcaggcccctggaccttggctcaccacctaagactgaacaagcactaaaggactgaccagcccgctaacagctcactccaaaaatgagcgggactcccagagaaactatttttattggagcatcctggttttgccacctgctcaccccactgcctgtccttctctccaaggaggcttctgccagccctgcttgtccttccctagaaaaggaaagccttttcctgtttgatcctgagacacctgtagattgagtttggaatattctccctattgcaatagtatttttgaataagttttatttttccctacctctggttgattttttaattaataCCAGTAAGCTTGGATGAAAGCCTGCACACCTTAGg----------tgtgtgtgtgtgtgtgtgtatgtatgtACTTTAGCATTACCATGAATGTAATAACAGTAAAATCAAACAAACACAGATGGATAAGCAATATGTTGGACTAGTATGAAAATGGCATTGCCAGGAGTGATATGATTTTTTTTCAAAATGGTACGCTTTTTGAAGTATAATCTTATTTTAACTTAAAATCTTACTATCAgaaaatgcagcgtacattaaaatgttctgaactgcttttattcatatattaaatgg-ttgtactcaaatatctacaaatttgtttttcacttatgtaattgtcttttcgaatgttcaaaagtcatgcagaatgtgagacaattttctattgaatacgattgctttatcattgcaagacatcaaacatccctgtttcctgccaaataaatgtacaatagcaATA s panTro1.chr1 116722839 1163 + 229575298 CGTACTCGCCCATCGCTCCGCGGACCTCTTTATCCAACCTTCAATGATTATTCTTTTTATTATATTCAATGATTATTCTACTTTTCATAGAGAGCAGCTGTCAGTCCAATAACACACTTAACAAATGATATACCTAGTCCTCAAGGTTAACAAACACATGAAGACCAGCCCAACCCTGAAAATCAGTTTGCAAACCTTCGCTATATCTGATGCCATTCCTAAAAATTTTTAGGGACAAGTTTTGTTTGTGGTAAGCAACATAAGGTGGGGTGTGTGCTGAGTCCAAAGCtgaccaattgctcacaattactcataactacccattgacttgattttatcaaacttcagacagtcttgtctcctctcctcaggcccctggaccttggctcaccacctaagactgaacaagcactaaaggacagaccagcccgctaacagctcactccaaaaatgagcgggactcccagagaaactatttttattggagcatcctggttttgccacctgctcaccccactgcctgtccttctctccaaggaggcttctgccagccctgcttgtccttccctagaaaaggaaagccttttcctgtttgatcctgagacacctgtagattgagtttggaatattctccctattgcaatagtatttttgaataagttttatttttccctacctctggttgattttt-aattaataCCAGTAAGCTTAGATGAAAGCCTGCACACCTTAGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtACTTTAGCATTACCATGAAAGTAATAACAGTAAAATCAAACAAACACAGATGGATAAGCAATATGTTGGACTAGTATGAAAATGGCATTGCCAGCAGTGATATGATTTTTTTTCAAAATGGTACACTTTTTGAAGTATAATCTTATTTTAACCTAAAATCTTACTATCAgaaaatgcagtgtacattaaaatgttctgaactgcttttattcatatattaaatgggttgtactcaaatatctacaaatttgtttttcacttatgtaattgtcttatagaatgttcaaaagtcttgcagaatgtgagacaattttctattgaatacgattgctttatcattgcaagacatcaaacatccctgtttcctgccaaataaatgtacaatagcaATA a score=21734.0 s hg17.chr13_random 153537 146 + 186858 AATGTAAAGATGTGTTTTGTAAAAAAGGTATATTTTTGAGTTACAAAACAAGGATTTTAAA---ACTTGAATTGTTACAGTGAATATGTCTTAATACAGGCCAGAGTCA-TTTAGGTAAAAAATTACCTCA-CATCTATTC-TTTGCAGTAT s panTro1.chr1 116724002 146 + 229575298 AATGTAAAGATGTGTTTTGTAAAAAAGATATATTTTTGAGTTAAAAAACAAGGATTTTAAA---ACTTGAATTGTTACAGTGAATATGTCTTAATACAGGCCAGAGTCA-TTTAGGTAAAAAATTACCTCA-TATCTACTC-TTTGCAGTAT s canFam1.chr1 105536110 150 - 124897793 AGTTTGAAAACGTGTATTA-GTTAAAGTTACGCTTTTTGGTTATGAGACGAGGCTTTCATATCCACTTGAACT-TTACAGTAAGAATGTTTTGATAGAGGCTGTAGTCACTTTAGATGAAAAATTACCTCAGGATCGGTTTGTCTTCAGTAT a score=0.0 s hg17.chr13_random 153683 14 + 186858 CACTTAAAGGTGTT a score=382.0 s hg17.chr13_random 153683 4 + 186858 CACT s panTro1.chr1 116724148 4 + 229575298 CACT a score=1711.0 s hg17.chr13_random 153687 10 + 186858 TAAAGGTGTT s panTro1.chr1 116724152 10 + 229575298 TAAAGGTGTT s rn3.chr18 62994125 10 + 87338544 TGAAGTTTTT a score=3016.0 s hg17.chr13_random 153697 18 + 186858 TATTTAGTGGCAAAGATT s panTro1.chr1 116724162 18 + 229575298 TATTTAGCAGCAAAGATT s rn3.chr18 62994135 15 + 87338544 TTTTTTGTTGT---TGTT s canFam1.chr1 105536260 18 - 124897793 TATTTAGCTGCAAAGATG a score=49556.0 s hg17.chr13_random 153715 124 + 186858 --TTTTTT--GTGCCTAGAGGCAGATATTTTGCCCCATGGCTATTTACTGTATGAAACTGTATTTAAATGAGTGTACATATATAAAAGCTGCCATTCTGGCTGTAAACTATTGCAGGTTATCAAGatt s panTro1.chr1 116724180 126 + 229575298 --TTTTTTTTGTGCCTAGAGGCAGATATTTTGCCCCATGGCTATTTACGGTATGAAACTGTATTTAAATGAGTGTACATATATAAAAGCTGCCATTCTGGCTGTAAACTATTGCAGGTTATCAAGatt s mm5.chr18 66991386 114 + 91083707 --TTTTGT--TTTCCTGAAAGTAGATATCTTGCCCAATGGGTATTTATGGTCTGTGACTATATTTATA----TGTATGCTTCTGAAGACTGATATTGTAGCCGC-AACTATTAA-----ATAAAAGTT s rn3.chr18 62994150 114 + 87338544 --GTTTTT--TTACCTGAAGGTAGACATCTTGCCCAATGGGTATTTATGGTCTGTGACTGTATTTATA----TGTATGCTTCTGAAAACTGATACTGTAGCCTC-AACTATTAA-----ATAAAGGTT s canFam1.chr1 105536278 116 - 124897793 CTTTTTGT--CTGTTTAGGGGCAGATATCTTGCCATATGGATATTTATGGTGTGTACCTGTATTTATA----------CATACAAAACTTGATACTGTAGCTACGAACTATTAAACATTATCACCATT a score=879.0 s hg17.chr13_random 153839 14 + 186858 aa----aaaataaacaaa s panTro1.chr1 116724306 14 + 229575298 aa----aaaataaacaaa s mm5.chr18 66991500 18 + 91083707 GATACTAAAGTAACTATT s rn3.chr18 62994264 18 + 87338544 GATACTGAAGCAACTGTT a score=8139.0 s hg17.chr13_random 153853 24 + 186858 taaaaatatttCT-GTTT-TTCTATG s panTro1.chr1 116724320 24 + 229575298 taaaaatatttCA-GTTT-TTCTATG s mm5.chr18 66991518 25 + 91083707 GAAAAATGCCACTGGTCT-TTCTGTG s rn3.chr18 62994282 25 + 87338544 GAAAAATGCCACCGGTCT-TCCTGTG s canFam1.chr11 49630694 25 + 75769841 TGAAATCATTGCT-GTCTGTTCTATG a score=-1480.0 s hg17.chr13_random 153877 3 + 186858 --AAA s panTro1.chr1 116724344 3 + 229575298 --AAA s rn3.chr18 62994316 2 + 87338544 --AA- s canFam1.chr11 49630719 3 + 75769841 ACA-- a score=73491.0 s hg17.chr13_random 153880 463 + 186858 TGTCTTTACTCGAGTCCAAGTGTAGAGATATAAAATGCTTGAAATTAATAAAACCAAGTGTTTCACGTATTT-----CAGTTGTGATGGCCTTTGTCCTACTTTTGTTAGTGAAGCAGGCAGACTGCATTTT-TTCCCTCTCATACACCTTCAAATGGTGGACAGAAAAATTTGATAAAACTTCTAGGGCATTATCTGATGAAACA---------CATTAAACACTAAAGGAGAAATACAACTTCATTGTTTATAAAAGACGTATAAGAAGGAAACCTGCATACATATATCTATCAGTTTTGTGTTT----------TCAAGAAATATTTGCCTTAAAATGAACTTCATTAGAATATGTGTTCTCCCACAGAGCCAAGGAAAGTAAGTTAGACACA---GGATCTGGAAGTC--TACCTGTGTGATGTAATTACATTGAAAACATTCCACAAATAACGCAGAAATGTATCA-TTGTGACCCAAAATATTCTCTA s panTro1.chr1 116724347 463 + 229575298 TGTCTTTACTCGAGTCCAAATGTAGAGATATAAAATGCTTGAAATTCATAAAACCAAGTGTTTCACATATTT-----CAGTTGTGATGGCCTTTGTCCTACTTTTGTTAGTGAAGCAGGCAGACTGCATTTT-TTCCCTCTCATACACCTTCAAATGGTAGACAGAAAAATTTGATAAAACTTCTAGGGCATTATCTGATGAAACA---------CATTAAACACTAAAGGAGAAATACAACTTCATTGTTTATAAAAGATGTATAAGAAGGAAACCTGCATACATATATCTATCAGTTTTGTATTT----------TCAAGAAATATTTGCCTTAAAATGAACTTCATTAGAATATGTGTTCTCCCACAGAGCCAAGGAAAGTAAGTTAGACACA---GGATCTGGAAGTC--TACCTGTGTGATGTAATTACATTGAAAACATTCCACAAATAATGCAGAAATGTATCA-TTGTGACCCAAAATATTCTCTA s canFam1.chr11 49630722 485 + 75769841 CATCTTTACTCAAGTCCAGATGTAGGGATTTAAAATCTTTGCATTTAATAAAATTAAACGTTTCACATACTTATGTATATTCTGAACTGCTTTTGCCCTACCCATATAAATGAAGCAGCCAGATTCTACTCTATTTTCTCTGATATTCCTTCAAAAGGTGGACTTACTAATTCTGT--ACCTTCCAGGAAAAGATCAGGCTAAATAAGAAACTTGAATTAAACACTAAAGGAAAAACACAACTTTATTGTTT-TAAAAAAGATATA--CAGGGAGTCTGCCTACATACGTCTATCATTTTTGGATTTATATTAGGAATCAAGACA-GTTTGTATTAAAGTGTGCTTTTATACAATATATGTTCTTCCCCAAAGCTAAGGGATGTCGGGTAGAGACACACAGATCTGGAAGGTGATAACCGTATTACATAACT--ATTACCTACATTTCTCAAATAAGATAGAAATTTACCATTTGTGAACCTAAATGTTCTCA- a score=7335.0 s hg17.chr13_random 154343 32 + 186858 AATTTTCTCAAAGCAATGTGGCCACATCTATT s panTro1.chr1 116724810 32 + 229575298 AATTTTCTCAGAGCAATGTGGCCACATCTATT s rn3.chr5 55355241 28 + 173106704 AGTTTGCTTGAGGTAGTGTAAATGTATC---- s canFam1.chr11 49631207 32 + 75769841 AATTCTTTCAAGGCAGTACAGCCATATCCATT a score=22831.0 s hg17.chr13_random 154375 55 + 186858 ATCT-TTTACTATGACTAGTCATCATTCCATGCATTTGAACATTACCTCACC-CATT s panTro1.chr1 116724842 55 + 229575298 ATCT-TTTACTATGACTAGTCATCATTCCATGCATTTGAACATTACCTCACC-CATT s mm5.chr4 38294196 54 + 154141344 ACCT-CCTCTTATGCCTAGTCACC-CTCAGTGAATTTGAACATTACCTCCTC-GTTT s rn3.chr5 55355269 56 + 173106704 ACCTCCCTATTGTTACCAGTCACT-TTAATTGAATTTAAACATCACCTTTTCATTTT s canFam1.chr11 49631239 55 + 75769841 TCTT-TTTATTATGACTAGTCATCTTTCCATGAATTTGAGCATTACCTCACA-CATT a score=120763.0 s hg17.chr13_random 154430 262 + 186858 TGCAGC---CTCCTATCTCTGCAATTAATTATGGCTAACATTCTCAGCAGTCCAAACATCTTGC------------AAGTGAC-----AGCTTGAAAAGGCCTACCAGAATGATGTTCA----CTCTGCCACCTGACTAGCTTGTCTTCCATCTAGACATTGCAGTATGTAGAAGAGTGCTTTTAGTATTATAA-ATTTGATCC--------AACACGTGTTCAATTAGATGAAA---TCTTAAATATTGCACTACATGTGAAT----------TGGG-AAAATGTTAATTTGCTTCTGTAGTT-TTAAG s panTro1.chr1 116724897 262 + 229575298 TGCAGC---CTCCTATCTCTGCAATTAATTATGGCTAACATTCTCAGCAGTCCAAACATCTTGC------------AAGTGAC-----AGCTTGAAAAGGCCTACCAGAATGATGTTCA----CTCTGCCACCTGACTAGCTTGTCTTCCATCTAGACATTGCAGTATGTAGAAGAGTGCTTTTAGTATTATAA-ATTTGATCC--------AACACGTGTTCAATTAGATGAAA---TCTTAAATATTGCACTACATGTGAAT----------TGGG-AAAATGTTAATTTGCTTCTGTAGTT-TTAAG s mm5.chr4 38294250 260 + 154141344 TTCAGCATGTTTCTATCTCAGAGACTAACTGTGGCTGACATTC-CAGCAATCAAAACATCCTGC------------AAATAACTCTGTTGCCTGGCTAGCCCCAGCAAAATGATATTCA----CTTTATTACCTGCCTTGCTTGTCTCCCATCCAACCACTGAAAAATCTGCAGGAACACGTTTAT-----TAA-ATTTGTTC-------------TGTGTTTAATCAGACAAAA---TCTTTAATACCATACTAGATATGACT----------TGAG-CGATGACTAAATTTCCTCTGAAATTGTTAAG s rn3.chr5 55355325 264 + 173106704 TTTAGCCTGTTTCTATCTCAGAGACTAACTATGGCTGACATTC-CAGCAATCAAAACATCTTGC------------AAATAACTCCTTTTCCTGGTAACCCCCAGGAAAATGATATTCA----CTTCATTACAGGAGTTGCTTGTCTTGCATCCAGCCACTGAAAAATCTGCAGGAACACTTTTAT-----TAA-ATTTGTTCT--------AA--TGTGTTTAATTAGGTGAAA---TCTTAAATACCATACTAGATGTGACT----------TGAGAAAAAGACTAAATATTCTCTGCAATTGTTAAG s canFam1.chr11 49631294 268 + 75769841 TTCAGCCTCCTTCTATCTTTAAGATTGATTATGGCTGACATTCTCAGCAGTCAAAACATCTTGC------------AAATGACTTCTTAGCCTGGAGAGCCCAACCAGAATGATGTTCA----CTTCACTGCTTGCCTAGCTTGTCT-CCATCTAGCCATTGAAGCATTTACAAGAACACTTCTAT-----TAA-ATTTGTTCC--------AACATGTGTTCAATTAGATGAAATCTTCTTAAATATTGTACTAGATGTGAAT----------TGGG-AAAATGCTAAATTGCCTCTGTATTTGTTAAG s galGal2.chr2 141519678 291 - 147590765 TGCAAA---GTCCTAGCTGTGATGCTAACAATA--TAGTTTGTTCACCAGTTTGGAGATTATATTTTAAGATAAAAAAGGTACTTGACATCTTTGTAGTACCTGTCGTAGAATTGGTCAGGCTTCTTGTAAAGTCAATGATCTGTCTTCAAAAAATACATTGAGGTCTGTAAAGGTTTGCTTTGATTTTGATAATCTTTGACTCGTGCTTTAAACATGCATTAAGCTGGA--------ACTTAAGTTCTGT----GAAGTGAATAGTAATTTTCTGGT-AAGAAAATCAAGTGCACATTTTATT-TTAAG a score=69246.0 s hg17.chr13_random 154692 311 + 186858 TGTATTCTCAGAGGCAGATGAAG-ACATATTACATCACTGAGTTCAAGAAATAAAGTAAATAGAAGAAAAAAGGTGT----------TATTTTAG------TTTGGTTGTGTTTATATTTGAAGTTTTCTTTTCCAGATTTAGGAGAACCTACTAAATACACTGAAAAAAATGTGGTAGCCCTGGGTTAAATATCATACCTTA--TTTTTTGTTTATTAATTCCAGGGTAGAGTAGAAAAATATGCTCTCTTATATAATAT-AAAAATGATATGGGGAAAAGAAATAAAAAATTAACTTAGAGACACCATTAATTAATTTCTTTTATAAAT- s panTro1.chr1 116725159 311 + 229575298 TGTATTCTCAGAGGCAGATGAAG-ACATATTACATCACTGAGTTCAAGAAATAAAGTAAATAGAAGGAAAAAGGTGT----------TATTTTAG------TTTGGTTATGTTTATATTTGAAGTTTTCTTTTCCAGATTTAGGAGAACCTACTAAATACACTGAAAAAAATGTGGTAGCCCTAGGTTAAATATCATACCTTA--TTTTTTGTTTATTAATTCCAGGGTAGAGTAGAAAAATATGCTCTCTTATATAATAT-AAAAATGATATGGGGAAAAGAAGTAAAAAATTAACTTAGAGGCACCATTAATTAATTTCTTTTATAAAT- s mm5.chr4 38294510 258 + 154141344 TGTATTCTCTAAGGTATATGAAG-GCATTTCA------------------------------------------TTT----------TATTTAAA-----CTTTGGACATATAAATACATTAAGATT--TTCTTAATATTTA----AATCCACTAAACATCCTTGATGTAATTTTATATCCTTGGTCAAGACTACATTTTTGA--TTTTTTGCTTACTACTTTCAAAGGAGTGTAGACAAACGTGATTTTCAGTTTAGC-----AAGTATTCTATAAGAGAAGAATTGAGGAGTAATTTTGAGATATTATTACTT--TTAACTTTATAAAT- s rn3.chr5 55355589 257 + 173106704 TATATTCTCTAAGGTATATGATG-GCATTTCA------------------------------------------TTG----------TATTTAAA-----CTTTGGTTATATTAATACATTGAGATT--TTCTTAATGTTTA----AGCACACTAAAGATCATGGACGAGATGTTATA--TATGGTCAAGACTACAATTTTGATTTTTTTTGTATACTAACTTCAAAGGAGTGTAGATGGACATGAGTTTAGAT-TAAT-----AATTATTCTATAAGAAAAGAATGAAAGTGTAACTTAGAGACATCATTACTT--TTAACATTATAAAT- s canFam1.chr11 49631562 312 + 75769841 TGTATTCTCAAAGGTAAATGAAACCCATATTATATCATTGGGTTTTAGCAATAAAATAAATAGAAGAAAAGATCTTTGAAGAAAAGATCTTTGAAAAAAATTTTGCTCATGTTTATGCATT----TTTATTTTCTAGCTATAGTAGAATATATTAAAGAAACTGAATATAAAGTGGTAGGCCTGGGTGTAATATCATGCTTTA--TTTTCTATTTATTAATTAAATGAGTACATAGAAAAATTTGCCTTCTCATGTAATTTAAAGAATAATA-AGAGGGACAGAGTTAAAAATCAATTTA---ATCTCCTTATTC----------AAAAATT a score=387.0 s hg17.chr13_random 155003 2 + 186858 GA s panTro1.chr1 116725470 2 + 229575298 GA s rn3.chr5 55355846 2 + 173106704 AA s canFam1.chr11 49631874 2 + 75769841 GG a score=88252.0 s hg17.chr13_random 155005 569 + 186858 AACACTAGGTAGTTTCTATTTGTTTTGACAAATAGAGAATATATTTAGAATCAATGCTTTATTTCTTGGAAAGTGGAGTAAAAAATTTAAAT---GTAGTATTCAGATTGTATTATAACTATGCACTACAGATCACATACATTTGTCTTTTCTTTGTATTAGACATTATTTAATGGTAAGCATCCTTTCAAGGGCTATTTTATATAAGTAGTAAGGTATCTGGAATTTCTGAAAT-----AATAAAAGTGACCTAAATCACTGTGTTTGGTAAATTCACAATATCCAAATAGCAGGAGGGGAGTGCTAGAGGTAGGGAGGGGAATGCTCATGTTCTCATTATTC----------CCAAACAGATTCTTA-AAGTCT-----TCTCACTGGACACATGGATGCACCTCTGTAATACCCAATGTCTTAGCCACAACTGTCTGCACTTTTTAATGAGATACATTTCAAC---ATTATTCCTTGTCACCTCAATATCAGATACTTTCTCATGTAATCTTTT-ACTTCTGAGGAGTTGAATTCTTGATCCAT------AAACTGAATCCATAGCTATGTATCTGTGGATGTTT-TTAAATTATGTGAAA s panTro1.chr1 116725472 569 + 229575298 AACACTAGATAGTTTCTATTTGTTTTGACAAATAGAGAATATATTTAGAATCAATGCTTTATTTCTTGGAAAGTGGAGTGAAAAATTTAAAT---GTAGTATTCAGATTGTATTATAACTATGCACTACAGATCACATACATTTGTCTTTTCTTTGTATTAGACATTATTTAATGGTAAGCATCCTTTCAAGGGCTATTTTATATAAGTAGTAAGGTATCTGGAATTTCTGAAAT-----AATAAAAGTGACCTAAATGACTGTGTTTGGTAAATTCACAATACCCAAATAGCAGGAGGGGAGTGCTAGAGGTAGGGAGGAGAATGCTCATGTTCTCGTTATTC----------CCAAACAGATTCTTA-AAGTCT-----TCTCACTGGACACATGGATGCACCTCTGTAATACCCAATGTCTTAGCCACAACTGTCTGCACTTTTTAATGAGATACATTTCAAC---ATTATTCCTTGTCACCTCAATATCAGATACTTTCTCATGTAATCTTTT-ACTTCTGAGGAGTTGAATTCTTGATCCAT------AAACTGAATCCATAGCTATGCATCTGTGGATGTTT-TTAAATTATGTGAAA s canFam1.chr11 49631876 562 + 75769841 TAAACTAAATAGTTCCTACTTGTTTTGTCAAATAGAGAATACACTTAGGATTAATGCTTTGTTCCTCGGAGAACAGAG--AAAATTTCAAATAACATAACACATAGGTTATATTGATACTATATGCTATAGATCA---ATATTTG-CTTTTCTTAATATTAGAC---ATTTAATAAAAAGTGTCATTT-AGAGCCTATTTAAGAGGAGTAGTAAAATACCTGGAATTTCTGAAATAGTAAAATAAAAATGACCTTAAACATTGTGTCTGGTAAATTCGCAATGCCCA-------------------TGGTGGTGGCGGTAGGCTTGCCTATGATttaattaattaattaattaattaaGCTGATTCTTGTCACTCTTCTAATCTCACTATGCACATAGA----------TAATGCACAGTG--TTAAGTGCAGAAAACTGTATTCTTGAAAAAGACGT-TTTCAACATTATTATTCCTTGTTATCATAATATTGGATATTTGCTCATATATTCTTTTCACTTCTGAGGATCTTATTTGCTAATCTATGAGCCAAAATTGAAACTATGGCTACATACTTGTGGACTTTTACAAAATTATGTGCAA a score=71247.0 s hg17.chr13_random 155574 804 + 186858 ATTTTGTATATGCATTTTTCAGGGGAAAGTATCAGATCACCCACCTGGTGATTGTAACAAAAACAATCACTCCTGTTGATATTTAAGTCTTAATTAATTCAGAAAAATTTGCACACACCTTAAGGTCAGATAGTATTTTGTACCCTACATATAAAAACTCCtttttttttttttgtttagatggagtctcactctgttgcccaggttggagtgcactggcgtgatctctgctcactgcaaactccgcctcccAtaacattaatgatcactgatcacagatcaccgtaacaaatataataataaggaaatattttaaaaattgtgaagattaccaaagtgtgaaaccaagacacaaagtgagcaaaggctgtttgttaaatggcaccaatagacttgcttcaccagggttgtcacaaacatctcatttgtaaataaaagaaaaaatgttcctatctgtgaagcacaataaagagaagtgcaataaaaTATGTTTGTATTAATTTGGTTAACTTTATTCCAACTTAATGTAAATTAGTTTTAAAACAGTTTATAAAATTCTAAAATGAACCTGGCAAATTTAGAGCAATAATAAAATGATTTAAATTAGAAAAGTCTTTTTTAAAAAGGATAAATAACAAATGCCTCATTGGAATTATTAAAGTTGTTTCAAGTTCAGCTCTGAGGTTCTTAGAAACTAAAGTAAAAAAGTATGACCAGTTTCTGAAGTCAAGATAAAATCATACAATCTTTAACTTAGAAAATTATCTTCTGTGTTGTGTCCTAAGCATAAACAAATGTAAGGAC s panTro1.chr1 116726041 800 + 229575298 ATTTTGTATATGCATTTTTCAGGGGAAAGTATCAGATCACCCACCTGGTGATTGTAACAAAAACAATCACTCCTGTTGATATTTAAGTCTTAATTAAGTCAGAAAAATTTGCACACACCCTAAGGTCAGATAGTATTTTGTACCCTACATATAAAAACTCCttttttttttttt-ttgagacggagtctcactctgttgcccaggttggagtgcactggcatgatctctgctcactgcaaactccgcct--cAtaacattaatgatcactgatcacagatcaccgtaacgaatataaaaataaggaaatattttaaaaactgtgaagattaccaaagtgtgaaaccaagacacaaagtgagcacaggctgtttgttaaatggcaccaatagacttgcttcaccagggttgtcacaaacatctcatttgtaaat-aaagaaaaaatgttcctatctgtgaagcacaataaagagaagtgcaataaaaTATGTTTGTATTAATTTGGTTAACTTTATTCCAACTTAATGTAAATTAGTTTTAAAACAGTTTATAAAATTCTAAAATTAACCTGGCAAATTTAGAGCaataataaaattatttaaattaGAAAAGTCTTTTTTAAAAAGGATAAATAACAAATGTCTCATTGGAATTATTAAAGTTGTTTCAAGTTCAGCTCTGAGGTTCTTAGAAACTAAAGTAACAAAGTATGACCAGTTTCTGAAGTCAAGATAAAATCATACAATCTTTAACTTAGAAAATTATCTTCCGCGTTGTGTCCTAAGCATAAACAAATGTAAGGAC a score=9954.0 s hg17.chr13_random 156378 71 + 186858 TTGCCCTGACACT-CTGTAAGTAGTTCCACTCCAATA--CGCCCTGCAGAAA-------TGTTTCCTGGCAAGAACAGCAA s panTro1.chr1 116726841 71 + 229575298 TTGCCTTGGCACT-CTGTAAGTAGTTCCACTCCAATA--CACCCTGCAGAAA-------TGTTTCCTGGCAAGAACAGCAA s canFam1.chr11 49632445 81 + 75769841 TTTCCCTAACCCGACTCTAAATAGTTTCACACACATATCTACATTGTGAAAACATATCCTGTATCCTGGTAAGCACAGCAA a score=463.0 s hg17.chr13_random 156449 13 + 186858 GTCAGAAGCCTTT s canFam1.chr11 49632526 12 + 75769841 ACCAG-AGCCTTT a score=21711.0 s hg17.chr13_random 156682 238 + 186858 TGGCTCCTCCTGGAACCTTAGGGTATTTGGACCCATGCTTTGGAATGGGGTGACCATCTACATCAAGCTAACTTAAATTCAAATTTGTGTGCATAGGATAAGAATAATTGGGTTAAATAAAATTCACTTTTAATCTAAAATGTCATTCATTAGTT-GACCAACTTTCCTTACCACTGGCCACTTGGTCCTTGTCTTGTTTGACCAGGGTTGTCAAACAAGGTTTGTTGTTTCCTTCTTT s panTro1.chr1 116727012 239 + 229575298 TGGCTCCTCTTGGAACCTTAGGGTATTTGGACCCATGCTTTGGAATGGGGTGACCATCTACATCAAGCTAACTTAAATTCAAATTTGTGTGCATAGGATAAGAATAATTGGGTTAAATAAAATTCACTTGTAATCTAAAATGTCATTCATTAGTTTGACCAACTTTCCTTACCACTGGCCACTTGGTCCTTGTCTTGTTTGACCAGGGTTGTCAAACAAGGTTTGTTGTTTCCTTCTTT a score=40559.0 s hg17.chr13_random 156920 245 + 186858 GAAGGAAAGAGTCAGTGTTTCTTCCATTCCAATGCATCCACTTGAGGAATTTTTAATAAAATGGGCAATGAATGGGAAGCAGAAGAAGTTACAGGCCTGTTAATCAAATGCTAAGTAATACACCCTGGAAATTCTAAACTCGTTTGCATGAAGACCTTGCTTATTTTGTAACTATTATGTATTATCAAACGTATACTTAATTCTTTGAATGTGTTAGTATGTGTTCAAAGTACACCttaatttta s panTro1.chr1 116727251 245 + 229575298 GAAGGAAAGAGTCAGTGTTTCTTCCATTCCAATGCATCCACTTGAGGAATTTTTAATAAAATGGGCAACGAATGGGCAACAGAAGAAGTTACAGGCCTGCTGATCAAATGCTAAGTAATAAACCCTGGAAATTCTAAACTCGTTTGCATGAAGACCTTGCTTATTTTGTAACTATTATGTATTATCAAACATATACTTAATTCTTTGAATGTGTTAGTATGTGTTCAAAGTACACCttaatttta s canFam1.chr11 49632552 236 + 75769841 GAGGGAGAGAGGAGATTATTCTGGATGTGAAACAAATGCACTTGAGAAATTTTTAATAAAATGAGTAATGAATGGGCAGCAGAACACACCAGAAG-TTGCTAATGTCGTGCCAGATAACAAAACCTGGGAACTCTAAAA-CACCCACATGAAGACCTTTCTTACTTCATAACTGTTATGTATTAGTGTATGTATTCTTAACTCTT----TGTGCTAGCATATATTCAAAGTAGA---TAGTTTTA a score=37858.0 s hg17.chr13_random 157165 422 + 186858 tatatacatatatttaaattacataaaataaataaGCCA-TAAAAATTTTTAAAGATTTTCTTATATTTCCTTTCAGTATTTTTATGTGCATGCATCTGTACTTGGTAATATTGTTGAATTCATGTTTGCATtgacaaagcctctccccttgcccaaactctagtcaggatcctctaagcctcctctcagccccagccttcagtgttcatcctagtctggcccacatctctcaggtttagtaagaaacttgcaaagaatcccctactctcagtactgatcacctttgacatctgatcaaatttgttatctcccaccaccctccagatgatttctgatcagtctggcctgccttcagtaagaatcctgttcgatctgtttaacccaaatcccctttgcccctgatgtttcctcttagtaTCCCC s panTro1.chr1 116727496 423 + 229575298 tatatacatatatttaaattacataaaataaataaGCCACTAAAAATTTTTAAACATTTTCTTATATTTCCTTTCAGTATTTTTATGTGCATGCATCTGTACTTGGTAATATTGCTGAATGCATGTTTGCATtgacaaagcctctccccttgcccaaactctagtcgggatcctctaagccacctctcagcctcagccttcagtgttcatcctagtctggcccacatctctcaggtttaggaagaaacttgcaaagaatcccccactctcagtactgatcacctttgatatctgatcaaatttgttatctcccaccaccctccagatgatttctgatcagtctggcctgccttcagtaagaatcctgttcgatctgtttaacccaaatcccctttgcccctgatatttcctcttagtaTCCCC a score=30063.0 s hg17.chr13_random 157587 226 + 186858 AGTTGAGCCAATTTTCAACCA-TTAAAAAAATCTTGGACAAAATTAAGTTCAGA-------TAGGTTCCAGAGTGCTTA----TGTTCAGTTCTTGGCTTTCTGAAGACCTGGCATATCCTCTTTAAATTGCCTCAATACAAGAAAATACAAAATGGAAAGAAGTAGACATTAGAAATTGGAAAAATGGAGAAATACAGGAATGAACATAAGTTTCTATTTCAAGTAATTAGGTAAAT s panTro1.chr1 116727919 226 + 229575298 AGTTGAGCCAATTTTCAACCA-TTAAAAAAATCTTGGACAAAATTAAGTTCAGA-------TAGGTTCCAGAGTGCTTA----TGTTCAGTTCTTGGCTTTCTGAAGACCTGGCATATCCTCTTTAAATTGCCTCAATAAAAGAAAATACAAAATGGAAAGAAGTAGACATTAGAAATTGGAAAAATGGAGAAATACAGGAATGAACATAAGTTTCTATTTCAAGTAATTAGGTAAAT s canFam1.chr11 49634713 171 + 75769841 AATTGAGTAAATTTTCAAACATTTAAATACATCTTAGACAAAATTAAGTTCAGGCAAAATTTATGTCCTAGAGTAGTGAATAGTGTTCAGCTCTTGAC--TCTGAACACCTG--------------------------------------AAAA---------------------------AAAAATAGAGAAACCAAGTAATATGCACAAGTTCATATCTTAGGTAATTATATTAAT a score=8174.0 s hg17.chr13_random 157813 212 + 186858 TGTAAGAT--------GTTTATATTTAACTTTTTCTCATTAGCTTTAGCCCCTTGAACCTTTGAGAACA-TGTTATTACTATATTTATCGAATGTCATATTTTTTATTTTAACATAGAATGGTATTTTCACTCAAATCTCTTGAAACATATA-TTTATAGTCAATAGttaaattttatttaatatcaatt--gtttctttttattagtattttcttaaaaaaat s canFam1.chr11 49634884 222 + 75769841 TATAGAATTATGAATAGTTTATACTTAGCTTTTACTGATTATCTTTAGCTTCCTGAATCTTTAAAAAAAACAGTATTACTAAATTTATTGAAAATCACATCTTTAATTTTAATAAGAAGTGATATTTTTATCAAGATCCCTTAAAAGACATCTTTTCTAGTTAATATTT--ATTCTATTTTATCTTTATTACGCTTATTTTTATTATTATTTTTCTCAAATAAT a score=21106.0 s hg17.chr13_random 158042 303 + 186858 gtggttcacacctgtaatcccagcactttgggaggctaaggtgggcagatcacttgaggtcaggggttggagaccagcctgagcaacttggagacaacctttctctactaaaaatacaaaaattagccgggcgtggtggtgcatgcctgtaatcccagctactcaggaggcttgaggcaggaaaattgcttgaacctgggaggcaaaggttgcagtgagccgagatcacaccaccacactctagcctgggtgacagagtgagactccatctcaaaaaaagaaagaaagaaagaaaATGCCAGA s panTro1.chr6_random 15546526 290 + 67355074 gtggctcacgtctgtaatcccagcactttgggatgccaaggctggtggatcac--aaggtcaggtgtttgagaccagcctgaccaacatgg--------tatcgctcctaaaa-tacaaaaattagccgggcctggtggcacatgcctgtaatcccagctactcaggaggcttgaggcaggagaattgcttgaacctgggaggtagaggttgctgtgagccgaaatcgcaccaccgcactctagcctgggtgacagagcgagactccatctcaaaagaa--aagaaagaaagaaaaTGCCAGA a score=2418.0 s hg17.chr13_random 158345 16 + 186858 CATTTATTGAAGGGCC s panTro1.chr6_random 15546816 16 + 67355074 CATTTATTGAGGGGCT s rn3.chr4 5149865 16 + 187371129 CAGTTTTTAAAAGACT a score=2966.0 s hg17.chr13_random 158361 23 + 186858 GGAATGGTATAGTGAAGTGTTCT s panTro1.chr6_random 15546832 23 + 67355074 GGAATGATATAGCGAAGTGTTCT s mm5.chr5 125443303 22 - 149219885 GGATTGGAAGGGGGAAGTA-GCT s rn3.chr4 5149881 17 + 187371129 -----GGAAGGAGGGAGTG-ACT a score=127845.0 s hg17.chr13_random 158384 530 + 186858 GAGTCAGCTGGGCTCTGATTGATACAGAgcttggcatgtttgaaggacagcaaggaagccagaatagcgggagcacagcagcggggag-acaagtgccacaagatgagttggagaaaggcactgggaaaggtttgtatt---ttaagtgctctgagaagcaatt--gaaggtttgaaatagaatagtgacttgcttgatcacatttgtacttttgaaaagttcctctggctgct--gtggggaaaggcttgagtagat----gcagggtgaga-gaagcataaccagcagtagactcttgtagcaggttaggtgagagatggtggtggccacgagtgtgctgctagtggtggaagtgacaagaag--tagaaggatcggagacaaaacttgaagataaaaagtcttgaatttgctgatgatttgcat--tgacgaagtgttgggggagaggactgaaggagcagaggaga-----gtgacaag-ggactggatgccatttataaggatggggaagactgg-gatg--aaaccggttaagggagaaatt---ttaaacat s panTro1.chr6_random 15546855 530 + 67355074 GAGTCAGTCGGGCTCTGATTGATAAAGAgcttggcatgtttgaaggacagcaaggaagccagaatagctggagcgtagcagcggggag-acaaatgccacaaggttagttggagaaaggcactgggaaaggtttgtctt---ttaagtgctctgagaagcaatt--gaaggtttgaaatagaataatgacttgcttgatcacatttgtacttttgaaaagttcctctggctgct--gtggggaaaggcttgagtagat----gcagggtggga-gaagcataaccagcagtagactcttgtagcaggttaggtgagagatgatggtggccacgagtgggctgctagtggtggaagtgacaagaag--tagaaggatcggagacaaaacttgaagataaaaagtcttgaatttgctgatgatttgcat--tgacgaagtgttgggggagaggactgaaggagcagaggaga-----gtgacaag-ggactggatgccatttataaggatggggaagactgg-gatg--aagccggttaagggagaaatt---ttaaacat s mm5.chr5 125443325 520 - 149219885 GTGTCAGTTGGGCTCTGACTGTTG-ATAGTACAGTATGTTTGAAGGGCAGGAAGATTGCACAGACAAGGAGAAAATATATATGGTGTG--------------TGGGGGTTGGGGA---GCAGCTGGAAAGGTTTGCCTT---TTAAGTGAATTGAGGCACAATC-AGAGGGTTCAAAATAGGTTAGTTTCTTGTTAGGTGAGATTTATATTTCTTAGAA-TTAATCTAGCTGCTGGGTAGAGAAAGTCTTGAGGAGACTGTAACGGGGTGGAAGGAAGCAGAAATACC---TGGCTGTTAGAGCAGATGGTGTACAAGACAGTGGCAGGCAGGACTTGGATGCTGACAGTGGAAGTGCTGAGGGGAATGTAATGGCCAGAGACAAA----TGAGATCAATTCTTCTAAGTTTGCTAATGATTTGAGT--GGAAGGGTCGATAGAAAACAGATCAGAAGG-GCAGAGAACATGTTTTTGACCAGAAGACTAGATGCCA-TTATAAAACTGAGAAAGACTAGCAAAC--AAACCAACTATAGGAGAGATT---TTGGTTGT s rn3.chr4 5149898 497 + 187371129 GTGTCAGTCGAGCCCAGAATGTTC-ATAGTACAGTATGTTAGACGGGCACTAAGGAAGCCAGGGCAGAAAGAATGCACAGATGGGGAAAACAAAT-------ATGGTGTTGGCAGAAGGAAAC-AGCTAGGTTTGCCTT---TTAAGTGAATTGAAGCACAATC-AGAGGGTTC---------------CTTATTAGGCGAGATTTATATTTCTTAGAA-TGACTCTAGCTGCT--G-AATGAAAGTCTTGAGGAGACTCTAAAGGGGTGGAAGGAAGTAGAGATACC---TGACTGTTAGAGCAGGTGGCATACAAGACAATGGCAGGCAGGACTTGGATACTGGCAGTGGAAGTGCTGATGGGGGTGTAATGGCTAGAGACACA----TGAGATAA----TTCTGAGTTAGGTGATGATTTGAGTGGGGAAGGGTTGATAGAAAACAGATCAGAAGG-GCAGA------------GACCAGAGGACTAGATGCCA-CCATAAAAAAGAAAAAGTTTAGCAAAC--AAACTAACTGTGGGAGAGATT---TTAGATGT s canFam1.chr16 42415783 430 - 60307850 gagtcaggaggcccccagctaa---agagaatggcatgtttaaaggaaagcaaggtagctggGTCACACCCATTTCATGAGAGAGGGCCACAGG--------ATAAAGTGGGAGAGAGACACCGGGAAAGGATTGCAGTAAGTtaagtgccttgagaagctgttggaagggtttaaaacaaggtggtgtcttgctccatcagatttacatttttgcaag-tccttctggctgttgtgcagggaagggcttagggagat----gcagggtagggagaatcatgaagaGC------------------------------------------------------CT----------------------------------------------GAAGACTG----TGCCGAATTTACTGATGGTTTGGAT--TGAAGGAGTGGCAGGGGAGAGTGATGAGGGAGAAGAACAGA------TCAGATGAGGGCTGGAATCCATTTCTAAAGATGGGGGAGATTGT-GAGCCAGAACTGGGTAAGGGAGAGATTGTAGTAGACGT a score=1040.0 s hg17.chr13_random 158914 8 + 186858 ggcaaaat s panTro1.chr6_random 15547385 8 + 67355074 ggcaaact s mm5.chr5 125443845 8 - 149219885 GACACCTG s canFam1.chr16 42416213 8 - 60307850 GGTAAACT a score=0.0 s hg17.chr13_random 158922 2 + 186858 ta a score=118.0 s hg17.chr13_random 158922 2 + 186858 ta s panTro1.chr6_random 15547393 2 + 67355074 ta s mm5.chr5 125443853 2 - 149219885 TT a score=3070.0 s hg17.chr13_random 158924 6 + 186858 agaggg s panTro1.chr6_random 15547395 6 + 67355074 agaggg s mm5.chr5 125443855 6 - 149219885 AGAGGT s rn3.chr4 5150765 4 + 187371129 --AGGG s canFam1.chr16 42416221 6 - 60307850 GGAGAG a score=-31.0 s hg17.chr13_random 158930 1 + 186858 g s canFam1.chr16 42416227 1 - 60307850 A a score=100.0 s hg17.chr13_random 158930 1 + 186858 g s panTro1.chr6_random 15547401 1 + 67355074 g a score=100.0 s hg17.chr13_random 158930 1 + 186858 g s rn3.chr4 5150771 1 + 187371129 G a score=22089.0 s hg17.chr13_random 158931 71 + 186858 ttttgtgtgagaaaatggaaatgctaagaaggaagttgaaaatc--ctgctaattt------ggagatctttgattaaa s panTro1.chr6_random 15547402 71 + 67355074 ttttgtgtgagaaaatggaaatgctaagaaggaagttgaaaatc--ctgctaatat------ggagatctttgattaaa s mm5.chr5 125444239 73 - 149219885 TTTTTCTTAAAAAGATGGATGTATTAAGGAAATAGAAAAAAATTAAATACTTCCTT------GAAGATGTTAGAAAAAG s rn3.chr4 5150786 72 + 187371129 TTGTTTTTAATAAGGTGGATGTATTAAGGAGGTGGAAAAAAATTAAATACTGCCTT------GGAGATGTTAGAAAGA- s canFam1.chr16 42416228 72 - 60307850 TTTGGTGTGACAGGATGGAAGTGCTAAGAAGGAAGTTGAAAACT--GTACTGACTTCCGCAGGAACATGTTGGA----- a score=384462.0 s hg17.chr13_random 159002 1536 + 186858 actagaaataagaa-----tgtgggaagcatcaacttccaagatgcc----------ctcattgtagataacaccatttagga-------------------------tctaggc-tcaagccctgggaaactccagggctttggaagtcaaatagaggaagaacacgtacaggagatgaagaaagattagcgagg-aaggcagTGAAATATCCACA-GGTGGACTGCTGC--CAAATCCAGTAGAACCGTATGCCAGATGTCAGGAGCATGAGTAAAATGAGAAAAGAGAAATGGCTTTTgacaaca---------------cctccctactaatagtagggaagaag-------------acataggtacagattcaagttgattggaaattatgaaagtgaggtaactgacctgcagtggttg--------ctgctcagtgaaatcagcctagtgattacctgagctaggttaga---gatttgatgggtaagaaagaacacctgagggtaatcctggagggagaaaaataaagtgtttgctggagagaatgagttggattgctggacttcaatgtgtgtgg--gttgagtttgtgacttaaaaattaaaccagtctattgcttgtgtggctt-----------ttccaAAATACTGTTAT----TCCATTACCTATCTCTT-ACCCCAAG--AGTAGTCACATTCTTATTT---CTGGTTATTTTAATTCCTGGTGGTATTTTTATGTGATTAATGAGATAGTACTTGTTAATTTGATGATATTCTAGAAACCTGGTAAGTACTATGTACCTTGTCTTAAGTTTTGGTTACTTGATTGGCAAAA-TTAT-GCATGC--ACCATTGAATTACCTAATTC---AAAATATATTCTTTTATTGTTTGACATTTGTCTTGT--TTTTCTTTAAAATGTTATCTTTGTGGAGTAAACATTTTTCTTTATGCT-GTTTAGCATCTTC---AGATTAGTTCAGGGTATTGCTGAATGTGGTTGTTTGGAAGTAAAATGCTTTAGTTTTAGTTATATAGATTTTA---------ATAAGATACTAATTTCTATATAATTTATCAGGTACTTTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAAC--GTTTCTTCACT-------TTTGTCCATTGGATGTAATTTCCATAAAGTATTCATTTCCCTAAGTAAAAACCGAAACCAAACCGACAACTAATGGTCACT-GAAGAAAGAGTGATTAAATGCTAAGATTATAATGGTATTTGCATTTTAATGTT----ACCAGCTCTCTACAGT--TTAAAGTTTATGCATTTATCGATTGCTTATGTTTCTCATTGCATTCTTTGGCCTACTGGTTTTGGTTGTTTATAGCTATAGA---ATATAGAATTCCTTATGGTTATCCATTTCTCCTTTTAAGTAGATTGATAGTTGGTAGAAGAAAAATAACCCCCCAATACTTTTTTCT----AGTGTTAATTCTTAAAGTGTCATTGACTTTTATTTACTTTTTGGTGCAGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAACCTTAATTTTTAAT--ATTTCATTGTAGTGATGTCTC---------------------------TGTAGCAGCAAACATTTAAGTTACTTAAGTTATACT--TAAATGTTT------AAATCACTGTTAGTGATTAG s panTro1.chr12 22862050 1534 - 117159028 ACTAGAAATAAGAA-----TGTGGGAAGCATCAACTTCCAAGATGCC----------CTCATTGTAGATAACACCATTTAGGA-------------------------TCTAGGC-TCAAGCCCTGGGAAACTCCAGGGCTTTGGAAGTCAAATAGAGGAAGAACACGTACAGGAGATGAAGAAAGATTAGCGAGG-AAGTCAGTGAAATATCCACATGGTGGGCTGCTGC--CAAATCCAGCAGAACAGTATGCCAGATGTTAGGAGCATGAGTAAAATGAGAAAAGATAAATGGCTTTTGACAACA---------------CTTCCCTACTAATAGTAGGGAAGAAG-------------ACATAGGTACAGATTCAAGTTGATTTGAAATTATGAAAGTGAGGTAATTGACCTGCAGTGGTTG--------CTGCTCAGTGAAATCAGCATAGTGATTACCTGAGCTAGGTTAGA---GATTTGATGGGTAAGAAAGAACACCTGAGGGTAATCCTGGAAGG-GAAAAA--AAGTGTTTGCTGGAGAGAATGAGTTGGATTGCTGGACTTCAATGTGTGTGG--GTTGAGTTTGTGACTTAAAAATGAAACCAGTCTATTGCTTGTGTGGCTT-----------TTCCAAAATACTGTTAT----TCCATTACCTATCTCTT-ACCCCAAG--AGTAGTCACATTCTTATTT---CTGGTTATTTTAATTCCTGGTGGTATTTTTATGTGATTAATGAGATAGTACTTGTTAATTTGATGATATTCTAGAAACCTGGTAAGTACTATGTACCTTGTCTTAAGTTTTGGTTACTTGATTGGTAAAA-TTAT-GCATGC--ACCATTGAATTACCTAATTC---AAAATATATTCTTTTATTGTTTGACATTTGTCTTGT--TTTTCTTTAAAATGTTATCTTTGTGGAGTAAACATTTTTCTTTATGCT-GTTTAGCATCTTC---AGATTAGTTCAGGGTATTGCTGAATGTGGTTGTTTGGAAGTAAAATGCTTTAGTTTTAGTTATATAGATTTTA---------ATAAGATACTACTTTCTATATAATTTATCAGGTACTTTAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAAC--GTTTCTTCACT-------TTTGTCCATTGGATGTAATTTCCATAAAGTATTTATTTCCCTAAGTAAAAACCGAAACCAAACCGACAACTAATGGTCACT-GAAGAAAGAGTGATTAAATGCTAAGATTATAATGGTATTTGCATTTTAATGTT----ACCAGCTCTCTACGGTGCTCAAAGTTTATGCATTTATCGATTGCTTATGTTTCTCATTGCATTCTTTGGCCTACTGGTTTTGGTTGTTTATAGCTATAGA---ATATAGAATTCCTTATGGTTATCCATTTCTCCTTTTAAGTAGAGTGATAGTTGTTAGAAGTAAAATAACCCCCCAATACTTTCTTCT----AGTGTTAATTCTTAAAGTGTGATTGACTTTTATTTACTTTTTGGTGCAGTAATTGCAGTTCATGAGTCAATGTTGATGTCA-TATAAACCTTAATTTTTAAT--GTTTCATTGTAGTGATGTCTC---------------------------TGTAGCAGCAAACATTTAAGTTATTT--GTTATACT--TAAATGTTT------AAATCACTGTTAGTGATTAG s mm5.chr5 125444317 1330 - 149219885 ACTAGAAA-ATGAA-----TGTAGAA-----CTGTTTCCAATATGCTATTTCAAACGTTCACTGTAAATAG---TGTTTAGGA-------------------------TTTAGGCTTCGGTTCCTAGGAAATATGAGGGCTTTAGGAGTGAA--TGAGGAAGAGCTTGCATAGGAAATGGAGGGAACTAATCATGG-AGGG---------------A-GGTGTACTACTAC--------------AACTGT-----------------CCTGAGGAAAATGAGAACAGAGAATGAACTTTGAGCAACATGGA-CCTCCTATGGCCCCTTGACTAAT-GCAGGGATGGTG-------------GCACAGACCCAGATGCCA------TGAGAAGTGCTGCAGTGA------------GCAG-GAGTG--------ATGCT--GAGAAGTTTGTGTCCTTGTTAACTGCACTTGGGTAAA---GTGTGGTTAGGGAAGTGA------CTCACAGTAA-----------GACACAGATAGAG---GCTGGTGA--------TGG--TGCTGG-CCTCAAGACGTGTGGCTGCTTAGTTTGAG--TTAGAAGTACAATTAGTTTTTCCTTTCTGTTTCTTAATTTTTTTCCCCTCTAAACATCATTA-----ACTGTTA-CTGTCTCTTCATTGTGAGTTGGTGGTCAATCTCTTATTT---TTGGTTGTTTAAATTGCTGATTGCATTTT--TGTTATTACTGGTA---TTCTTACTAGTTTGATAATGTTCTAGACACATGGTAAGTACAATATATCTTGTTTTAAGATTTTGTCATTTAACTGGTAAAA-TAAT--CATACAGATTCTTAAATTGCTTTACTC---AAAATAAGGTC-TTTGTTGTTTGACATTTCTTCTGT--TTTTCTTTAAACTATTACATTGGTGGAATAAACATTGTTCTTGCTCTTCATTTAGCTTCATC----GATTAGTTGAG---ATTGCTCAGTGTGGTTCCTTGGAAGTAAAATGCCTTCATTTT----------ATTTTAACT------ATGAGACATTGGTTCTTGTA-----TATTAGGTGTCTTAGTC-TTTTAATTTGCAAA-TTAGGACAATTTGCTTTAATA-ATCTCTTAACTATTCAAATTAATTCCTTGGGTATACTTACTCTTAAGATATCATTCACATCAATAAAAATC----------------------------------------------------------------------------------------------------AT--CCAACATCCATGCCCTCATC---TGAGCATGTCT------------TTTAGCCTGCTGG-TTTGAGTGTTTATA-CTAATGA---ATACAACACTCTCTAAAGTTGTCTCTTCCCCTGTTTTGGTACAGACATACTTGTTAGATG-AGTATAATCCCTGAGTGTTTTCTTCT----AGTATTAATTCTTGGACCGTGACTGACTTTTACATTTATTTTTGTACTGTAGTTATAGTTCATGAGTC-------ATGCTA-TATGAACCTTGATTTTTATTTCACCTTATTGTA-TGATTTTTC---------------------------TAC----TTAAATATTTA----ATGTAAATTATGCTCGCAAACATTTGAGTTAAAGTCACTTTAGGTGAT--G s rn3.chr4 5150858 1357 + 187371129 ATTAGAAGTAGAAACTGACTGTAGAA-----CTGTTTCCAATATGACATTTCAAACTTTCACTCTAAGTAC---TGTTTAGGA-------------------------TTTGTGC-TCAGCTCTTAGGAAGTCTGAGCGCTTTAGTAGTCAA--TGAGTAC-AGCTTGCATAGGAAATGGAGAGAAATAATCATGG-AGGGAGGTGTGCTATC---A----------CCGC--CAGAT-TAGTAGAACTGTCT--------------------------TGAAACTAGAGAATGAACTTTGGGCAACAGGTAGGTTACTATGGCCCCTTGACTAAT-GCAGGGATGGAG-------------GCGCAGACACAGATGCTA------TGGGAAGGGCTGTAGTGAG---------CAGCAGTGGTGGGCTGGGATGTGCT--GAGAAGTTAAT-TCCTTGTTAACTGAGCTGGGTAAAGTGTGCTTAGTCAGGGAGGAGATGGCAACGTCAGACATGCAAGACAGT-AAAACACCAAGTG---GCTGGCGA--------CCGGTGCCTGGCCTTGCACAAGTGGCT--GCTTAGTTTGAG--TTAGAAGTACCATTAGTTT-TTCTTTGTGTTTCTT-----------TTTTTTATTCTCTCTCTAAACTTCATTAACTGTCTCTTCATTGCAAATTGGTGGTCATGCTCTTATTT---TTGGTTATTTAAATTGCTGATTGCATTTT--TGTTATTACTGGTA---TTCTTAATAGTTTGA-----TTCCAGAAACATGGTAAGTACAATAT-TCTTGTTTTAAGATTTTGTCATTTAATTGGTAAAA-ATAA-TCATACGAATACTTAAATTGCCATATTTAAAAAAACAGGGTCT----TTGTTTGACATTTCTCCTGT-------TGAAAACCCTTACCTTGGTGGAGTAGACATTGTTCTCGCTCTC-CAGTAGCTTCATC---AGATTAGCTGAG---ATTGCTCAGTTTGCTTACTTGGAAGTGAAATGCTTCATTTC-----------ATTTTAACC-----AATGAGACACTGGTTCTTGTA-----TATCAGGTCCTGTAGTCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAATAGATCTCTTAACTATTCAAATTAATTCCTTGGGTATACTTACTCTTAAGGTGTCATTCCCATCAATAAAAATC----------------------------------------------------------------------------------------------------AT--CTGACGTGCACACACTCATC---TGAGCATGTAT------------TTAAGCCTGCTGG--TTGAGTGTTTACA-CTAATGC---ATATAACACTGTCTAAGGTTGTCCCTTTCCCTGCTTTAGTGTAGACATACTTGTTAGATC-AGTCCAATCCCTGAATGGTTTCTTCT----AGTGTTAATTCCTAGACTG--ACTGACTTTTACGTTGATTTTTGTACTGTAATTATAGTTCATGAATC-------ATGCTA-TATAAACCTTGATTTTTATTTTACTTTACTGTA-TGATATTTG---------------------------TAC----TTGAATATTCT----ATATAAATTATACCTGCAAACCTTTGAGTTAAAGTCACTTTAGGTGATAAG s canFam1.chr16 42416300 1447 - 60307850 ATTAGAAATGTAAA-----TTTGGGAGACAACAACCTTCAAGATGGTGTTTACTGGCCTCCTTAGAGATCGTACCATTTAGAAAGAGACTACACAGAGAAGAGCGTTGTCTAGGC-TCAA-CCCCGGGAAACACT-GGGCTTTGGAGGTCAGGTGGAGGAAGAACGTGCTCGGGGGG-ACAGAAAGGTCAGCAGGGCAGGGCAGGGCCACATTCACG-GGTTTGTTGCCGCATTGAACCCAACGGAACTGGATG-TAGGTGTTGACAGTGTGAGTACAGTGAGAATAGAAAAATGACTCT-GGCAGCATAGAGG---------TTTCCCAGAGAAC---CTGGATGCAGCTGTACACTGTACACTCAGGTATAGATACAGGTTGATCTGATAGTAGTAACACGGGGTAATTCAC--------------------CTGTT-AGTAAAATTAGCATAGCCATTACCTGAGTTTGAGGGGA------------------------------------------------G------------------------------------------------------------GTT---------------AATTGAAACCAGTCTCTTCCTTGTGTGGTTT----------TTCTCAAAATAATGTTAC----TGCATTAATTATCTGAT-CTCCAGAG--GGCTGTCAAACTCTTACTTTGGTTGATTATTTAAATTGCTGGTGGTAGTTTTGTGTGATTAATAGGCTACTATTTGTTAGTGTGATAATATTCTAGAAACCTGGTAAGTACTGTGT-----TTTTTAAGTTTGGGTCATTTAATTGATAAAAGTTATAGCATAT--GTTCTGGAATTACCTAATTC---AAAATAGGCTC-TTTATTGTTTGACATTTGTTTTGTGTTTTTCTTTAAAATGTTATCTTTGTGGTGTAGACATTTTTATTTATGCT-GCGTAGCGTCCTCATCAGATTAGTTCAAGTTATTGCTGAATGTGGTTATTAAGAAGTAAAATGTCTTACTTTC----------ATTTTAACTACTTTAATAAGATACTATTTCTTGTATAAATAACCAAGTATCTCAGGCATTTTAATTTGCAAATTTAGGACAATTTGCTTTAAT--ATTT-TTCATTGTACAAATTAGTCCCATGGATGTAAT----CTAAGGATAATAGTTCCCTAAATAAAAATAAAAACCAAAATCACAACTAGTGGTCACTAGAAGGAAGAGTAGTTAAATGCTAGGATTATAGCTGATATTGCATCTTAAGATTGAACACTAACTTTCCATAAT--TTAAAGTGAATATTTCTATCGATTGCTCAAATTT-----------CCTTTGTCTCCTGG-TTTGGTTATTTTTAGCAATAGGTGTACCTAACATTCTTAAAG---------------------ATAGAATGATAGTTGTTAGAAG-AAAACAACCCCCAAGTAGTTTCTTATATAAAGTGTTAATTCTTAGAATTTAATTGACTTTTATTTATATTTTGTTTCTATAATTGCCATTCATGAGTCAGTGTTGATGTCCTTATAAACCCTAATTCCTAATATGTTTCATTGTACTAATGTTTCAATCCGAATAAAATACGTAATGTAAATTGTAGCTGCAAACATTTA----------AGTATA-------------------AAATCATTGTAAGTGTAAAG a score=13308.0 s hg17.chr13_random 160538 23 + 186858 CTTATTTTGCCTTCC------------TTGAAGCA s panTro1.chr12 22863584 23 - 117159028 CTTATTTTGCCTTCC------------TTGAAGCA s mm5.chr5 125445647 23 - 149219885 TTTATTTTCCCAAAC------------TTAAAGCA s rn3.chr4 5152215 23 + 187371129 TTTATCTTCCCAAAC------------TTAAAGCA s canFam1.chr16 42417747 23 - 60307850 CTTATTTTCCCTACC------------TTGAAGCA s danRer1.chr24 4047946 35 + 23152154 CTCATTTTACATTGCGTCACTGTCATGTTTCAGGA a score=50244.0 s hg17.chr13_random 160561 78 + 186858 ATTTGTCCTAAAT----TTCCATACTTT---------------TGCATTTGT---TTTTGCTGTTCTAAAA-----TTCCTTAGTTGCTGGCTTTGACCGTTTAT s panTro1.chr12 22863607 79 - 117159028 ATTTGTCCTAAAT----TTCCATATGTT---------------TGCATTTGT---TTTTGCTGTTCTAAAA----ATTCCTTAGTTGCTGGCTTTGACCTTTTAT s mm5.chr5 125445670 78 - 149219885 ATTTGTCCTAATT----TTCCATACCTT---------------TGCATTTAC---TTTTGCCGTCCTAAAA-----TGTTTTAGTTGCTGGCTTTGATCTTTTAT s rn3.chr4 5152238 77 + 187371129 ATTTGTCCTAATT----TTCCATACGTT---------------TGCATTTGC---TTTTGCTTCTCTAAAG-----TTCCTTAGTTGCT-GCTTTGGTCTTTTAT s canFam1.chr16 42417770 77 - 60307850 ATTTGTCCTAAAT----TTCCATACGTC---------------TGCATTTG----TTTTGCTGTTCTGAAA-----TTCCTCAGTTGCTGGCTTTGACCTTTTAC s fr1.chrUn 106165859 58 - 349519338 ATCTCTCTTAA---------CATCTTTC---------------TTGATATGT---TT-------------A-----TTTTTTCTGAGCTGGCTTTG--TTTTTAA s danRer1.chr24 4047981 104 + 23152154 ATTTGTCCCAAACGCAGTACCTTACATTATTTGCTCGGTATGATGCATTTGTGTATTGCACTCATTTGACATGCTGTGTTCTTATTGCTGACTATCA-CATTTAC a score=278627.0 s hg17.chr13_random 160639 173 + 186858 GTTGCTGAGTTTTAC------ACATC---------------TATTTTCT--------------------CAACTGCCATATCCTAGGAGGCCTGGAGTACCCATAATACTGTGAGCCCACCT---TCCTTGTCCTCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCA-GTGCCATTTGGAGCACAAAAGTGGTAAATAA s panTro1.chr12 22863686 174 - 117159028 GTTGCTGAGTTTTAC------ACATC---------------TATTTTCT--------------------CAACTGCCATATCCTAGGAGGCTTGGAGTACCCATAATACAGTGAGCCCACCT---TCCTGGTCCCCAGACATTTCAGGAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCATGTGCCATTTGGAGCATCAAAGTGGTAAATAA s mm5.chr5 125445748 173 - 149219885 GTTGCTGAGTTTTAT------ACATC---------------TATTTTCT--------------------CACCTGCCATACCCTAGGGGGCTTGGAGTAACCATAACACAGTGAGCCCGCCT---TCCTGGGCCCCAGACACTTCAGAAGGCCGGGAAATTTTTAAACCCAGGCAGCTTTCTGGCA-GTGCCATTTGGAGCATCAAAGTGGTAAATAA s rn3.chr4 5152315 173 + 187371129 GTTGCTGAGTTTTAT------ACATC---------------TATTTTCT--------------------CACCTGCCATATCCTAGGGGGCTTGGAGTAACCATAATACAGTGAGCCCACCC---TCCTGGTCCCCAGACATTGCAGAAGGCCGGGAAATTTTTAAACCCAGGCAGCTTTCTGGCA-GTGCCATTTGGAGCATCAAAGTGGTAAATAA s canFam1.chr16 42417847 173 - 60307850 GTTGCCGAGTTTTAT------ACATC---------------TATTTTCT--------------------CACCTGCCATATCCTAGGGGGCTTGGAGTACCCATAATACAGTGAGCCCACCT---TCCTGGTCCCCAGACATTTCAGAAGGTCGGGAAATTTTTAAACCCAGGCAGCTTCCTGGCA-GTGCCATTTGGAGCATCAAAGTGGTAAATAA s galGal2.chr2 141524037 172 - 147590765 GTTGCGAAGTTTTAT------ACATC---------------TATTTTCT--------------------CACCTACCATATCCTAGGGGGCTTGGAGTACCAATAATACAGTCAGCCCACCT---TCCTGGTCCCCAGACATTTCAGAAGGTCGGGACATTTTTAAATCCAGACAGCTTCCTGGCA-GTGCCATTTGGAGCATCAAAGTGGTAAAT-A s fr1.chrUn 106165917 198 - 349519338 GTTGCTGCATTTTGTCA----CCCTC---------------TACTCCCTCCCTTTCTCTCACTCTCACCCACCCTCCCTTACCTAGGGTGCATGGAGTCCCCATAGCAGTGTGAGCTCCCCCTTGTCTTGGTCACCAGACCAGCCAGAGGGGTGGGATGTCCAAAAGACGAGGCAGTCCTCTGGCA-GCCCCGGCTGGAGCATCAGAGTGGTAAATAA s danRer1.chr24 4048085 194 + 23152154 GTTGCTGCATTTTGTCGCCCCTCATCACCTTCCTCCCTCCGTCTCTTCT--------------------CCGCCGCTCTACCTCAGGGTGCATGGATTAACCGTAGCGCAATGAGCTCGCCG---TCCTGGTCGCCAGAGCGCTCGGATGCTTGGGACAGCCCTAAGACCAGGCCGATGCACGGGC-TGCCCGTCTGGACCATGAGATTGGTAAATGA a score=2192.0 s hg17.chr13_random 160812 6 + 186858 AATTGC--- s panTro1.chr12 22863860 6 - 117159028 AATTGC--- s mm5.chr5 125445921 6 - 149219885 AACTGC--- s rn3.chr4 5152488 6 + 187371129 AATTGC--- s canFam1.chr16 42418020 6 - 60307850 AATTGC--- s galGal2.chr2 141524209 6 - 147590765 ATTTGA--- s fr1.chrUn 106166115 6 - 349519338 TGTGGC--- s danRer1.chrFinished 17865209 6 - 40167097 ---TGTTAA a score=8916.0 s hg17.chr13_random 160818 7 + 186858 AT-TTACA s panTro1.chr12 22863866 7 - 117159028 AT-TTACA s mm5.chr5 125445927 7 - 149219885 AT-TTACA s rn3.chr4 5152494 7 + 187371129 AT-TTACA s canFam1.chr16 42418026 7 - 60307850 AT-TTACA s galGal2.chr2 141524215 7 - 147590765 AT-TTATT s danRer1.chrFinished 17865215 8 - 40167097 ATATTACA a score=52768.0 s hg17.chr13_random 160825 132 + 186858 TTCATATAT-CATTTCTGTCTGATTTGTTTTGCCCTACTGG--GTGTTAA--GAATTAAATCTTTCTTTTCTAGA-------TTGAGCTTCCA------------GAAACACTTTTTAAA-----------TCTAAAA-----------------------------ATTTTA-ATGTAAAGAAA---TAATATGCTTGC s panTro1.chr12 22863873 132 - 117159028 TTCATATAT-CATTTCTGTCTGATTTGTTTTGCCCTACTGG--GTGTAAA--GAATTAAATCTTTCTTTTCTAGA-------TTGAGCTTCCA------------GAAACACTTTTTAAA-----------TCTAAAA-----------------------------ATTTTA-ATGTAAAGAAA---TAATATGCTTGC s mm5.chr5 125445934 138 - 149219885 CTCATGTAT-CATTTCTTTCTGGTTTGTTTTGTTCTATTGG--GTGTTAA--ATATTAAACCT---TTTCTAAGA-------TTCAGCTTCCA------------GAGCCACTTTTTAACATTTTT---CTTTTAAAG-----------------------------ATTTTA-ATGAGGAGGAA-GTTAAACTG-TAGC s rn3.chr4 5152501 163 + 187371129 TTCATGTAT-CATTTCTTTCTGGTTTGTTTTGTTCAATTGG--ATGTTAA--GCATTAAACCTTTGTTTTCTAGA-------TTTAGCTTCCA------------GGGCCACTTTTTTAA-----------TCTCAAAAATTGCCTTATAATATTTTTCACTTTAAGACTTCA-ATGAGGAAAGAAATTAAATTG-TATT s canFam1.chr16 42418033 141 - 60307850 TTCATATAT-CATTTCTTTCTGGTTGGTTTTGTCCGAGTAGATGTGTTAA--GAATTGAACCATTCTTTTCTAGATAAGTAGTGCAGATTCCA------------GAGCCACttttttaa-----------tataaaa-----------------------------atttta-GTATGAAGAAT---CAACATGCTTGC s galGal2.chr2 141524222 153 - 147590765 TTCGTATATCCGTTGCTATCT------TTCTGCTGTAGAGA--CTACTGATGAAATTCTGTCTATCACAATTGAA-------TTAATCTTCCATTCTAGTACTGCTTAACACGTTTAGAAACCATTAAAACTCTGGAC-----------------------------CTTTCAGGTTAGAAGAAA---AAGTGTGCTTTC a score=38041.0 s hg17.chr13_random 160957 139 + 186858 ATTTAAAAATC--------------------------------------------AAGTATACATTTTTAATACCTCTTTTTATGGTTAATTCCTTT--TGTTGTGATTACTACTGG---TTTTATGAGGGAGAAGTCCTTGACATGTAGACCAAAAGGTAATTAAGGACCTTTTCATTCATGATATC- s panTro1.chr12 22864005 139 - 117159028 ATTTAAAAATC--------------------------------------------AAGTATACATTTTTAATACCTCTTTTTATGGTTAATTCCTTT--TGTTGTGATTACTACCGG---TTTTATGAGGGAGAAGTCCTTGACATGTAGACCAAAAGGTAATTAAGGACCTTTTCATTCATGATATC- s mm5.chr5 125446072 135 - 149219885 ATTTAAAG---------------------------------------------------ATATATTTTTAATTGATTTTCTTTGAATGATTTTCTTT--TGTTGTTGTTGTTATAAGTATTTCTTTGAAGAGAAAATTCTTGTCACATAGAATAAGGTGTAATTTGGGACTTGCTCATTTATTGTATC- s rn3.chr4 5152664 118 + 187371129 ATTTAAAGA----------------------------------------------------------TTAATGCCTCTTT---GAATAACTTTCTTT--TGTTGTTTTAAGTAT------TTCTTTGAAGGGGAA-TTCTTGTCACATAGAACAAGCTGTAATTTGAGACTTGCTCATTTTTGATATC- s canFam1.chr16 42418174 180 - 60307850 ACTTAAAAATCTGGATTAGGAGGAAATTAAATTGCAATTTTACATGACTGATTTTAAGAGTGAATTTTTAGTAACTTCTTTTT--ATGGTTTTCTTTTATGTTGTAATTAGCGT------TTCTATGGAGGAAAA-CCCTTGTTGCATAGGCTATAAAGTATTTTAGGACTTGCTCATTCTTGATAATC a score=20934.0 s hg17.chr13_random 161096 136 + 186858 ATAAAACTTTGTTGCTTAGAAAAAAGCAAAAGAAAAAACTCCATTAATTTATTATGTTCTCATGGACAAGAAATACCAAAATTGTGGCAGATTTCATTGTCTGTTT--AATACCTTAAAATGACAAGGCTTTTTCCCT- s panTro1.chr12 22864144 136 - 117159028 ATAAAACTTTGTTGCTTAGAAAAAAGCAAAAGAAAAAACTCCATTAATTTATTATGTTCTTATGGAGAAGAAATACCAAAATTGTGGCAGATTTCATGGTCTGTTT--AATACCTTAAAATGACAAGGCTTTTTCCCC- s mm5.chr5 125446207 94 - 149219885 ATAAA------TTG-------------------------------AATCGATTACATACAGACAGAGGAAATGTACTACAGTGTCAGGAAGCTTCATTGTGCATGT---TCACCTCATAGTCACAGAATGTT----CC- s canFam1.chr16 42418354 133 - 60307850 ATAAAATTTTGTTGCTTAGAAAAGAACAAAAG--AAAACTACAT-AATCTATTATATGCTAATGAAGAAGAAATACCAGAATC---GCAGATTTCAATGCCCGTGTTAATAACCTCACAATTATAGGGCCTCTCTCTCT a score=24465.0 s hg17.chr13_random 161232 69 + 186858 CATGAC-ATTGGTTGATG--GCTCTGCCAGTCCTTCA-----------AGTGAGTTAAGTAGTGTGATGCATTTTGAAGAGAA s panTro1.chr12 22864280 69 - 117159028 CATGAC-ATTGGTTGATG--GCTGTGCCAGTCCTTGA-----------AGTGAGTTAAGTAGTGTGATGCATTTTGAAGAGAA s mm5.chr5 125446301 67 - 149219885 CATGTT-ATGAGCTAATGATGCTCTCTCAGTTCTTAA---------------TGTTAAGTAGTGTGAAATGGTTTGAAGCAGG s rn3.chr4 5152849 68 + 187371129 CATGATAAAGAGCTGATGATGCTCTCTCAGCTCTTGA---------------TGTTAAGTAGTGTGATATCATTTGAAGCAGA s canFam1.chr16 42418487 80 - 60307850 CATGTC-ATTGATGGAGG--ATTCTGCTAGTTCTTGAATACATAACTCAGTGAGTTATGTAGTCTGATGCATTTTAGAGGGTA a score=34380.0 s hg17.chr13_random 161301 103 + 186858 AAAAATTAATTTGAAAAA---GTATTAACTCAAAAGTTA--AAATACTTCATTGACCGGAGATGACAGTTTTTCTTCATATTCTATATTTAAT---ATTC-TGGAATATGGC s panTro1.chr12 22864349 103 - 117159028 AAAAATTAATTTGAAAAA---GTATTAACTCAAAAGTTA--AAATACTTCATTGACTGGAGATGACTGTTTTTCTTCATATTCTATATTTAAT---ATTC-TGGAATATGGC s mm5.chr5 125446368 97 - 149219885 AAAAGTTCA----AAAAA-------TAATCTCAAAGTCA--GAATACTTTATTGACTGAAGAAGGTGATTTTCCCTTATCCTCTCTATTTAGT-TGTTTC-TAGGATAGAGC s rn3.chr4 5152917 99 + 187371129 AAAAGTTCA----AAAAA---TAACCATCTCAAAAGTCA--AGATACTGTATTGACTAAAGAAGGTGATTTCCCCT-ATCCTTGCCATTTAAC-TGTTTC-TAGAA-GGAGC s canFam1.chr16 42418567 108 - 60307850 GAAAATTAATGTGAAAAGTATTAATCATCTGAAAAGTTA--AAATATTTGACTACCTAGAGAAGAGAATTTT-CTTCCTCTTCTATATTTAATATGATTT-TGAAATAAGGC s danRer1.chrFinished 17872265 104 - 40167097 AAATAGTAATCTTGCAAA---GTGCTACTTTAACTTTTGATAAATGTGGTGTTGTTTTGTTGATATTGTTTTTTTT--TTTTCCTTATTTAAT---ATTCATAGAAAATAAC a score=31682.0 s hg17.chr13_random 161404 143 + 186858 TGTTTAATTCAGACTAATCAAGGATTTTAAGGAA-TTCTAGATTATATTTTAT---TTTCTTTCTTGACTGGAAGAAC-TATTTTTTTTAACCTCCCTACCTCCGCCTGATATCATCCAAGATATTGAGGTATAAATATACCTCATT-------------T s panTro1.chr12 22864452 143 - 117159028 TGTTTAATTCAGACTAATCAAGGATTTTAAGGAA-TTCTAGATTATACTTTAT---TTTCTTTCATGACTGGAAGAAC-TATTTTTTTTAACCTCCCTACCTCCCCCTGATATCATCCAAGATATTGAGGTATAAATATACCTCATT-------------T s mm5.chr5 125446465 155 - 149219885 TATTTAAGTTAGACTAGTGAAAGGTTTCAGAAAACTTTCAGAGTATATTTTCTTAATTTCTATTAAAATTGGAAGGGCACATTTATTCTTATCCAGATA------ACTGTAGCCATCTAAGGTAATGTGGCATAACTTTAGTTAATTCATTTTAATTAGAT s rn3.chr4 5153016 121 + 187371129 TGTTTAGGTTAGAC-AGTGA--GATTCCGGAGAC-TTGGAGAGCACATTTCCTTAATTTCTATTAAAACTGGATGGGC------------ACATCCATG-----------AATCATCCAAGGCAATGTGGCATAATTTTAGTTAATT-------------C s canFam1.chr16 42418675 131 - 60307850 TGTTTATTTTAGACTTATCAAGGGTTTCAAAGGAGTTCTAGATTCTACTTTCTTA-TTTCTATCACTATT---AGAAC-TATTTTT-----------CAGTTCACTCTGATATCATGCAAGGTGTTGAAA-ATAGAGACAGTTGCTT-------------T a score=-649.0 s hg17.chr13_random 161547 3 + 186858 --GAC s panTro1.chr12 22864595 3 - 117159028 --GAC s mm5.chr5 125446620 3 - 149219885 --GAT s canFam1.chr16 42418806 3 - 60307850 AAG-- a score=2977.0 s hg17.chr13_random 161550 19 + 186858 --------------------AGTTTGATAATATAGACCA s panTro1.chr12 22864598 19 - 117159028 --------------------AGTTTGATAATATAGACCA s mm5.chr5 125446733 19 - 149219885 --------------------AATTTAAGAAAATAAACCA s canFam1.chr16 42418809 39 - 60307850 AGCATAAAAGATGTTTTGATAAATTTGTAGCAAATACCA a score=26877.0 s hg17.chr13_random 161569 85 + 186858 CCAATTTTTACTTACTTTTTTTCTGGGTCAGCATTTCATGTTTGAGAAAATAAATTGAGAGATTACTGTAGTCTTGATTTTT------AAT s panTro1.chr12 22864617 85 - 117159028 CCAATTTTTACTTACCTTTTTTCTGGGTCAGCATTTCATGTTTGAGAAAATAAATTGAGAGATTACTGTAGTCTTGATTTTT------AAT s mm5.chr5 125446785 88 - 149219885 CCAATTTTCACTTACTATCAGTCTG---TACCTATGGATGTTAGGGGAAATGAACTAAGAGATTATTGTAATCCTAATTTTTTAAAAGATT s rn3.chr4 5153304 81 + 187371129 CCAATTTTCACTTGATTTTAGT-TG---TACCAATGGGTGTTAGGGGAAATGAACTGGGAGATCAGTGTCATCCTAATTTTT------AAT s canFam1.chr16 42418848 67 - 60307850 CAACTTTTCACTTACTCTCATC-TG---TGTCTTTAGATGCT-GGAAAAATAGATTA-----------TAGCCCTGATTT--------AAT a score=3469.0 s hg17.chr13_random 161654 25 + 186858 CACTGACTTAATTTTTCAAAAATCT- s panTro1.chr12 22864702 25 - 117159028 CACTGACTTAATTTTTCAAAAATCT- s mm5.chr5 125446873 25 - 149219885 TATTTATTTATTTATTTATTTATTT- s canFam1.chr16 42418915 24 - 60307850 AATTGACTTAAT--TTAAAAAATTCT a score=4162.0 s hg17.chr13_random 161679 31 + 186858 TTTATACCAATTTAATAACAAAACAAACTCg s panTro1.chr12 22864727 31 - 117159028 TTTATACCAATTTAATAACAAAACAAACTCa s canFam1.chr16 42418939 26 - 60307850 TTTATAC-----TTACAACAAAACTATCCAG a score=27701.0 s hg17.chr13_random 161710 317 + 186858 gccgggcgcagtggctcacgcctgtaatcccagcactttgggaggctgagggggcagatcaccggaggtcaggagtttgaggccaacctggccaacgtggtgaaaccccgtctctact-aaaatacaaagagatttagccgtgcgtggtggcatgtgcctgtaatcccagctgctagggaggctgaggcaggagaattgcttgaacccaggagacagaggttgcagtgagccaagatcacaccattgcactccagtctgggcaaagaagcgagactccatctcaaaaacaaacaaac----------------aaacaaaaaacccaaaaaaCT s panTro1.chr12 22864758 334 - 117159028 gctgggcacagtggctcatgcctgtaatcccagcactttgggaggctgagggggcagatcactggaggtcaggagttcgaggccaacctggccaacgtggtgaaaccccgtctctactaaaaatacaaagagatttagccgtgcgtggtggcatgtgcctgtaatcccagctgctagggaggctgaggcaggagaattgcttgaacccaggagatggaggttgcagtgagccaagatcacaccattgcactccagcctgggcaaagaagcgagactccacctcaaaaacaaacaaacaaacaaacaaacaaataaacaaaAACCCCAAAAAACT a score=814.0 s hg17.chr13_random 162027 7 + 186858 AACCTGA s panTro1.chr12 22865092 7 - 117159028 AACCTGA s rn3.chr4 5153443 7 + 187371129 AGTCCTA a score=4884.0 s hg17.chr13_random 162034 42 + 186858 CCCCATCCATCTGTTGTGCAAAGAAGCTGATGCACTTCTCAA s panTro1.chr12 22865099 42 - 117159028 CCCCATCTATCTGTTGTGCAAAGAAGCTGATGCACTTCTCAA s rn3.chr4 5153450 35 + 187371129 CCTTGTCTATCCTTTGTT---AAGAGCCAAGGCCTCTC---- s canFam1.chr16 42418971 39 - 60307850 CCTCCCTTACCCCTTGTTCAAAAAAGCATAGGAACTCGA--- a score=128615.0 s hg17.chr13_random 162076 561 + 186858 AAGGGATCTCAAGG-------AGAGCAGGGTAAGAGAAGACAGGAGTGGCAGTTTGAAACTGGGAGCTGGCTGTATTTATTACATCCAAAGAGAAAAAAGCCATTCCTCCTGTTCCTTTTGTTCATGTGTTTCTATTTTATGCTTACCGTATCATCATAAATTTTTGACTTGGAAACCATTCTGCTAAATAGG-GAATAAGTTCAT---TTCAAACTAT-GAT--AAGGGACATCAGTTGAAGATATGACATATTATTTAACTTATGGTGAGGGAAACACCTAAGTATTTTCCTGA--GCATCTGGATAA--TTTTAAATATACATAATTCATCTACTTAGGTAGGTGCCAGGTTTTTTCAAGGAGTAATTAATTAGTACAAACAAGGGTGAG---GGGGCAGGGAAC-ACCATACTCTGGTACTTAATGTCTGAAATTATCAGGGAATTTAACACATTTTCCCATAGG-----TTTATTTCTTGTGTAAG----AAGTCAGATAA-ATTATTTCCATTTCAAGTATTTATTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGTCAGCTTTCCTGTAATCCTCA s panTro1.chr12 22865141 561 - 117159028 AAGGGATCTCAAGG-------AGAGCAGGGTAAGAGAAGACAGGAGTGGCAGTTTGAAACTGGGAGCTGGCTGTATTTATTACATCCAAAGGGAAAAAAGCCATTCCTCCCATTCCTTTTGTTCATGTGTTTCTATTTTATGCTTACAGTATCATCATAAATTTTTGATTTGGAAACCATTCTGCTAAATAGG-GAATAAGTTCAT---TTCAAACTAT-GAT--AAGGGACATCAGTTGAAGATATGACATATTATTTAACTTATGGTGAGGGAAACACCTAAGTATTTTCTTGA--GCATCTGGATAA--TTTTAAATATACATAATTCATCTACTTAGGTAGGTGCCAGGTTTTTTCAAGGAGTAATTAATTAGTACGAACAAGGGTGAG---GGGGCAGGGAAC-ACCATACTCTGGTACTTAATGTCTGAAATTATCAGGGAATTTAACACATTTTCCCATAGG-----TTTATTTCTTGTGTAAG----AAGTCAGATAA-ATTATTTCCATTTCAAGTATTTATTATTCAGATTATTTAAAGCAAAGCTTTCACAAAGCCTTTTGTCAGCTTTCCTGTAATCCTCA s mm5.chr5 125447190 520 - 149219885 AAGGACTCTCAAGGGACCCAAAGAACAGGGTGAGAATACA-AGGAGAGGCAGCTTGGAGCTGGAAGGTGTTTGCACTTAATTAAACTGAAGGGGAAAGCCCAAGTCCC----TTCCCTTTATTCATGTGATGT--CTTTAGTCTCCCGACATAAACATAGAGTTTTGACCCTGAGCCTGTTCTACTCAGTAGG-AAGTGGGCTCAG---TTTATGAAATGGAT--GAAGGCCATCAGGTGAAAAGGTGGCATACTTTTTCATCTGTTATAAGGAAGAAAA--AAATTTTTTCCTGACTTCTTCTAAGTCAGTTTTTAAGT--------TGCTTCTA-------AGATGCAAACTTTTTTCC---AGTCAGCAATAAATCTGAATA------------------TGACC-AATATTGGTTGGTGCCTACAGCTTAAGATC-TCAGGAATTTTAGCAGATTTTCCTGAATG-----ACTTTTTCTTATGTTAGTGAAGATATAGATAA-GTTATTCCCATTTCAAACA-TTATTTTTAAGGTTTATTA--------TTTTGTCA-----TTATGCCAATTTTATTAAGATCTTCA s rn3.chr4 5153485 499 + 187371129 AAGGGGCCTAA----------AGAACAGGGTGAGAGTACC------TGGAAGCTTGGAGCAGGAAAGGGTTTGTA----------CTGAAGGGGACAGCACATGTCCC----TTCCCTTTGTCCCTCTGATG---TCTCAGTCTCCTAACGTAAACATAGTGCTTTGACCCTGAGCCTGTTCTGCTCGGTAGG-AAATGGGTTCAG---TTTAGGAAGTAGAT--GAAGGCCACCAGGCAAAAATGTGGCATACTTTTTCATCTAAGG-AACAAAGAAAA--AAAAATTTCCCTGACTTCTTCTAAGTCAGTTTTTAAGA--------TGCTTCTA-------AGGTGCAAGTTTTTTCCAGCCAGTAATACATAATTCTGAATGTGACCAAGGTTGGGTCAGGGTTCTAATGTTGGTTGTTGCCGACAGCTTAAGACC-TCAGGGAATTTAACATCTTTTCCTTAAGG--ACTTTTTTTTCTCATGCTAGTG--AAGATAGTGAACATTATTT-------------TTAAGGTTCA------TTA--------TTTTGCCT-----TTGTGCCCATTTTATTAAGATCTTTA s canFam1.chr16 42419010 526 - 60307850 ---------AAAGA-------AGAGCAGTTTAAGAGAACA-AGGAGAGGCAATT-----------------TGTAATTATTAACACTGAAGGGAAAAAAG--ATTACCCCCTTCCTTTCTGCTCATGTCCATCTGTTTTATGCTCACACTATAACCATAAATTATCAACTTGGAAACTGTTATGCTAAATAGGTAAACGAGTTCAGCATTTCAAACTGC-AATAGAAATGATGTCAGTTGAAAATGTGGCATATTATTTAACTTATGG-----GAAAAAT--CAGGATTTTCCGGA-GTATTTTTAATAA--TTTTAGATATCAGAATGTTGTCGA--TGTGTTGATATCAGACTTTTTCAGGAAGTAACACATAAGTCTGCATATAAACAAA---ACAACAGTAATA-AATA-ACCCAAGTATTTATTTGTTAAAGTA-TCAGAGAATTTAACCTGTTTTCCCAAAGAATATTTTTATACATTGGGTAAA----AATTCAGATCA-GTTATTTGTATTTCAAGTAATTATTATCCTGATGAGTTAAAGCAAGCTGTTTA-------CTCTATTAGCTTTCCTGTAATCTTTA a score=1348.0 s hg17.chr13_random 162637 8 + 186858 AATAATTT s panTro1.chr12 22865702 8 - 117159028 AATAATTT s mm5.chr5 125447710 8 - 149219885 AGTACTTT s rn3.chr4 5153984 6 + 187371129 AG--ATTT a score=15244.0 s hg17.chr13_random 162645 176 + 186858 TTCCTGgctggacgctttggcttactcctgtaatcctggcactttgggaggcagaagcaggaggatcacttgagcccaagagttctaggctgcagtgagctgtgatcacaccactgcagtccaacctgagtgacggatcaagttcttgtctcaaaaataaaaGTAATAACAATAAT s panTro1.chr12 22865710 171 - 117159028 TTCCtggctggacgctttggcttactcctgtaatcctggcactttgggaggtagaagcaggaggatcacttgagcccaagagttctaggctgcagtgagctgtgat-----cactgcactccaacctgagtgatggatcaagttcttgtctcaaaaataaaagtaataacaataat a score=2375.0 s hg17.chr13_random 162821 14 + 186858 AATAAATTTTCCTC s panTro1.chr12 22865881 14 - 117159028 aaaaaaTTTTCCTC s canFam1.chr16 42419536 14 - 60307850 AATACATTATCCTT a score=219336.0 s hg17.chr13_random 162835 701 + 186858 TAAATACAATGGT-GAATGAGGTAGA-AATGTTGAGTTCATAAGAGAACTGTTGAATAGTGAAGGAAACTGACTTAATTTTAATGACAGGAAGAATACTGTTACACACTAGCAAAAATGAACTTTTATGCTGAT---GTAGCAGTACAGAATA-TGCttccaac--ccagggacgctggagccaggcttgctagctaagcgaccttggacaacttacttaaccattttattcctcagcacactcatctcaaataaggata--ataaaac-ctactatatgggattgttgagagtaaaaaatacttagatcagtacatagtaagtactcaatagatgttagctattactGTAATCACCGCGAGACCAGTTAATGAGAGAGTTCTTCCTTAT------CCTTACTCTATATTGAATACAATTTGT-TGCACTTCGAAATATCTGGATCAGACTATAGTTGTTGT--CGTCACTGAGAATGTAGGAGTGGGAAAGAGAAAAATCAT-GCAAAGTCTTGC-TGAT----AGCGTTCACAGTGACAGCCCGAAA----GTATGATTCTAAGGTTGTAAGCATTTTATATTTAGATTTTTAAGTTGTGGAGTATACTTTTA-AAGATAAAAATAATAAGCCAGGTCTCTTAATAC---TTATCTAA--------------AGAAGTGTTTGTA-----TAACATTTAATAAAATGTTTTATCTCAGTG--GCATTTGGATTTAAAAATTATTTTGGGCTGTC s panTro1.chr12 22865895 698 - 117159028 TAAATACAATGGT-GAATGAGGTAGA-AATGTTGAGTTCATAAGAGAATTGTTGAATAGTGAAGGAAACTGACTTAATTTTAATGACAGGAAGAATACTGTTACACACTAGCAAAAATGAACTTTCATGCTGAT---GTAGCAGTACAGAATA-TGCttccaac--ccagggacgctggagccaggcttgctagctaagcgaccttggacaagttacttaaccattttattcctcagcacactcatctcaaatgaggata--ataaaac-ctactatatgggattgttgagagtaaaaaatacttagattagtacatagtaaatactcaatagatgttagctattactGTAATCACCGCGAGACCAGTTAATGAGAGAGTTCTTCCTTAT------CCTTACTCTATATCGAATACAATTTGT-TGCACTTCGAAATATCTGGATAAGGCTATAGTTGTTGT--CGTCACCGAGAATGTAGGAGTGGCAAAGAGAAAAATCCT-GCAAAGGCTTGC-TGAT----AGCGTTCACAGTGACAGCCCGAAA----GTATGATTCTAAGGTTGTAAGCATTTTA---TTAGAATTTTAAGTTGTGGAATATACTTTTA-AAGATAAAAATAATAAGCCAGGTCTCTTAATAC---TTATCTAA--------------AGAAGTGTTTGTA-----TAACATTTAATAAAATGTTTTATCTCAGTG--GCATTTGGATTTAAAAATTATTTTGGGCTGTC s mm5.chr5 125447718 677 - 149219885 TAAATACTATGTTAAAATGAATTAGA-TATGTTCAATTCATGTGAGAGCTATTGAATAATAAAGGGTACTGATCACATTTTCATGATATGAAGAATGCCACTTTACAGAAGTAAAAATAAACTTTGCTACCT-T---GTAATATTTCAGAATA-AAGAATAAACAACCAAGGATGGTGG-GCCA--CTTGCTAACTGAG-GACCTT-AAGAAGTCACTTACACTTGTTA-CCCTCAGAACAATTATCCTTAAAGTGGAGA-----------TACCCTGAGGGTTTGTTGAGAAGAAATATTGCTCAAATCAATGCATGCTAAGTGCTCAGTAAATGTTC-CTGTTACTCTCCTCTCC------------AAGGATATAGTTTTTCTTGAT------AACCATTTTGTACTGAAGAGAGTCTGT----------ACATGTCTGTGTAAGG--ATAGTTACTCT--AAACACCTAGAATAAAGTAGTAAGGAAGTCAAAAATAGTGGGAAAGGCCGGC-TGATAGGAAGCACTCATGGTGATAG-ATGCAA----CACTGATTCTAAAGCTTTAAGTAGTTTT-------ATTTCTAAATTATGG---ATACATATATAAGATAGAAATAGTAAGTCTGCTCTATTAATATGTATCATCTAATTATAT--AAAAAGATAAATATTTGTG-----TAATACTTAATAAAATGTTTTATTTCACTGATATATCTGGATTTAAAAGTTCTTTTGGGCTTTT s rn3.chr4 5153990 670 + 187371129 TAAATACTGTGTTAAAATGAGTTAGATAATGTTCAATTCATATGAGATCTATTGAATAATAAAGGATACTGATTATATTTTCATGATATGAAGAACAGCACTTTACAGTAGCAAAAAGAAACTTTGCTGCCT-T---GTAATATTTTAGAATAGTGACTAAAAA--CCAAGGATG-TGG-GCCA--TGTGCTAGCTGAGTGACCTTGGAGTAGTCACTGACACTTTTTA-----------------CCCTAAAGTGGAGA------CAC-CTA------AGGTTTGTTGAGGGGAAATATTGCTCAGGTCAGTGCACACTAA-TGCCTGGTAG-------CTGTTTCCCTCGTCTCC------------GAGAAGATAGTTTTTCTTGATAGCTACACCTACTTTGTACTGAAGAGAGTCTGTGTGTGTT----AATGTCTGTATAAGG--ATAGTGACTCC--AGACACCTAGAGTAGACATGAAAGGGAGTCAGAAATAGT-GCTGAGGCGTGCTTGGTAGGAAGCACTCAGCATGACAG-AGGGAGCACTGATTGATTCTAAAGCTTTAAGTTGTTTT-ATTTTTATTTTTAAGTTATGG-GTACAAATATAGAAGATAGAAGT----AGTCTGGTCTATTAGTATGTATCATCTAATTCTAT--AAAAAGATAAATATTTGTG-----TAACGTTTAATACAGTGTTTTATTTCACTG--ACATCTGGATTTAAAA-TTCTCTTGGGCTTTT s canFam1.chr16 42419550 693 - 60307850 TAAGTACTGTGATAGAGTGAGGTACA-TCTGTTCAGTTCATAC---AGCTATTGAATAGTAAAGGAAACTGAC--AATTTTAATGACAGGAAAAATATTGTTATACACTAGCAAAATTTAGCTTTCATGCAG-TGTAGTAGcagtgcagaata-ctggttgaga--atgtggatactggagctacagttgctagctcta-gactttggacaagtta------cattttatccctcggcgcatttatctctaaaatggggataataaaatactactggccttgtgagttgtgagtaaaaggtgcttagagtggtgtatag-aagtactcaatatatgtcagctattGCTACAATTACA--GAGAACAGTTAGCAAGAGAGTCTTTCCTTAC------GCTTGCTCTGTATTGCATACAAATTGG---------------------TTGGG--ATTGTGTCTGTTGAGCTACTTAGAATGTAGGATTAGGAAGTGAAAAAATAAG-GCCAAGGTTTAC-TGATAGAGAACATTCACAATATGAGTCCCAAC----ATTTGATTCTAAGATCATAGGCATTTTATGTCTATACTTTTAAGTTGCATAATACATGTTGA-AAGATAAAAATAATAAGCCTGGTCTCTTAATATTTAACCTCTAATCAGAGTAAGAAAAGCAAGTATTTGTGTGTTATAACCTTTAATAAAATGTTTTAGCTCACGT-------TGGATTTTAATATTCCTTTGGATTTTT a score=8800.0 s hg17.chr13_random 163536 13 + 186858 ACAGAATGTTGAC s panTro1.chr12 22866593 13 - 117159028 ACAGAATGTTGAC s mm5.chr5 125448395 13 - 149219885 ATGAAATGTTAAC s rn3.chr4 5154660 13 + 187371129 ATGAAATGTTAAC s canFam1.chr16 42420243 13 - 60307850 GCAGAATGCTGAT s galGal2.chr2 141526607 12 - 147590765 ACTGAAT-TTAAC a score=-3695.0 s hg17.chr13_random 163549 9 + 186858 TTTTCT-TAA s panTro1.chr12 22866606 9 - 117159028 TTTTCC-TAA s mm5.chr5 125448408 7 - 149219885 TTCTGT---A s rn3.chr4 5154673 8 + 187371129 TTGTCT--GT s canFam1.chr16 42420256 10 - 60307850 TTTTCCCTTC s galGal2.chr2 141526619 9 - 147590765 TTGTTA-TCT s fr1.chrUn 106166773 9 - 349519338 TCTTCC-TCT a score=173243.0 s hg17.chr13_random 163558 140 + 186858 TCTGTT-ACATAGGGCTGTGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGGTGAGGTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGCTT--CC-- s panTro1.chr12 22866615 140 - 117159028 TCTGTT-ACATAGGGCCATGGGTCTGGATTTCCAGGAAAGCGGAGACCTCGAGGTGCAGGACTGTCGGGGCGAGTTGGCCGAGGCAGGTCAAAGCTGAAAAGTGGAATCGGAGCTGTTGTATTGCCTGGGGTGAGGCTT--GC-- s mm5.chr5 125448415 138 - 149219885 TCTGTT-ATGCAGGGCCGAGGGTCTGGATTTCCAGGAAAGCGGAGGCCTCGTGGTGCTGGGCTGTCAGGACGAGGTGGCAGAGGCAGGTCTAAACTAAAGAGTGGAATTGGAGCTGTTGTATTACCTGGGGTGAGACTT------ s rn3.chr4 5154681 137 + 187371129 TATGCT-ATGCAGGGCCGAGGGTCTGGATTTCCGGGGAAGCGGAGGCCTCGTGGTGCTGGGCTGTCAGGGCGAGGCGGCAGAGGCAGATCTAAACTAAAAAGTGGACTCGGAGCTGTTGTGTTACCTGGGGTGAGAGT------- s canFam1.chr16 42420266 142 - 60307850 TCTGTT-ATGTAGGGCCGTGGGTCAGGATTTCCAGGAAAGCGAAGACCCCGTGGTGCGGGGTTGTCAGGACGAGGTGGCAGAGGCAGGTCAAAATTGAAAAGTGGAATTGGAGCAGTTGTGTTACCTGGGGTAAGACACATGT-- s galGal2.chr2 141526628 139 - 147590765 TATGTT-GAATAGGGCCGTGGATCAGGATTCCCAGGGAAGCGGAGGCCACGTGGTGCAGGTCTTTCAGGACGAGGTGGCAGAGGCAGATCAAAACTGAAAAATGGAGTTGGGACTGTAGTCATTCCAGGGGTAAGAAC---AC-- s fr1.chrUn 106166782 141 - 349519338 CCTGCTCCTACAGGGCCGAGGCTCAGGCTTCCCTGGGAGGAGGCGACCCAGAGGGGCAGGACTGTCGGGCAGAGCTGGGCGTGGTCGGGCCAGAGGCAAGAACGGTGCAAATGCCAGCATCAATCCTGGGGTACGAGCT--GT-- s danRer1.chr24 4054188 142 + 23152154 TCTGTT-TGCTAGGGTCGTGGATCTGGCTTTCCTGGAAGGCGACGACCCAGGGGAGCTAACCTGTCTGGAAGAGGTGGCAGGGGACGCTCCAGGCTAAAGATGGAGAGCAGCCCTGTGGTCACCCCAGGGGTACGAAGC--CCCC a score=-9207.0 s hg17.chr13_random 163698 30 + 186858 TTCATGTA--------TATTTTCTCTAATC--TAAA---TGTC s panTro1.chr12 22866755 30 - 117159028 TTCATGTA--------TATTTTCTCCAATC--TAAA---TGTC s mm5.chr5 125448553 22 - 149219885 ----------------TTGCTCTTATTATT--CCAG---TAGC s rn3.chr4 5154818 22 + 187371129 ----------------CTGTTCTTCTTATT--CCCA---TAGC s canFam1.chr16 42420408 41 - 60307850 CTCATTTGCTTTATCTTTGCTATTATAATC--CATAATTTATT s galGal2.chr2 141526767 34 - 147590765 TTATTTTAAA------GTCATGTTGTAATCTGTGAA---TGTA s fr1.chrUn 106166923 31 - 349519338 CACTTGCA--------TGACATCTGAAATTC-TGGA---CGTC a score=1457.0 s hg17.chr13_random 163728 6 + 186858 AGTTAA s panTro1.chr12 22866785 6 - 117159028 AGTTAA s mm5.chr5 125448575 6 - 149219885 AATTAA s rn3.chr4 5154840 6 + 187371129 AACCGG s canFam1.chr16 42420449 6 - 60307850 GAGTGA s galGal2.chr2 141526801 6 - 147590765 ACATAA a score=33824.0 s hg17.chr13_random 163734 231 + 186858 TGA----TGACAATCTCA----TAGCAAGTTATTTTGAACTTAAGAGTTATATAAATAGGTCAAAATGTTT--ATTTTACTGTTCTACTTTGC-------------TTTTTTTTTGA--GCCTCTGGTTACG-TTTTCTTGTAT----ATTTAC--------------TTTCTCATCCTTT--CTCTATTCTTACCTTCCTCTTTGACTCCTTATCTTTCTATGCCACCCCTCTCTA-----------------------AAAAGTCAGT------------------------------------------------------------ATGTAATATAGTTGCT----------------------------CTTTTACT--TAAAAA s panTro1.chr12 22866791 242 - 117159028 TGA----TGAAAATCTCA----TAGCAAGTTATTTTGAACTTAAAAGTCATATAAATAGGTCAAAATGTTT--ATTTTACTGTCCTACTTTGCTTTTT---TTTTTTTTTTTTTTGA--GCCTCTGGTTACGTTTTTCTTGTAT----ATTTAC--------------TTTCTCATCCTGT--CTCTTTTCTTACCTTCCTCTTTGACTCCTTATCTTTCTATGCCAACCCTCTCTA-----------------------AAAAGTCAGT------------------------------------------------------------ATGTAATATAGTTGCT----------------------------CTTTTATT--TAAAAA s mm5.chr5 125448581 239 - 149219885 TGG----TGATACTCTCATTTGTAACAAGTTGTTTCCATCCTAAGAGTCCCAGGAGTAGTCTCATCCCTTTACATCTTACTGTGT--CTCTGCTTGATAAAATGTGTTTTATTTTGG--AAGTCTGCTTAGG-TCCTTTCGTTTTCTGATTTAC--------------CTTC-------------CTTCTCTTTCTTTCTTCTTTGATATCTT---TTTATATGCAAACCTTCTAC------------------------AAGAGTGAAT------------------------------------------------------------TTTTAGTGTGTTTTCT----------------------------TTTTTTTTAATTAAAA s rn3.chr4 5154846 235 + 187371129 TGGTGATTGATGCTCTCATTTACAACAAGTTGTTTCCACCCTAAGA-TCCCAGGGGTAGTCTCATCCCTTCACACTTTACTGT----CTGTGCTAGATAAAAGTTGCTTTATTTTGG--AAGTCTGTCCAGG--TCTTTTGTCTTCTGATTTAT--------------TATC-----------CTTCTTTTTTCCTTTCTTCTTTGACATC-----TTTTTATGCCAACCCTTAC-------------------------AAGGATGAAT------------------------------------------------------------TTTTAGTGTATTTTC-----------------------------CTTTTAAT--TAAAAA s canFam1.chr16 42420455 365 - 60307850 TGA----TGATAATCTCATTTGTA--AAATTA-CTAGATTGTAAGAGTCACGTAAATAAGCCAAAATTTTT--ATTTTACCTTAT--CTCCATTCCCCCCCCCCCCCCTTTTTAAAAACACTTCTGGGCAAG-TTTTCatttaa----attttctttaatattttatatttCCCATCTTTTTACTCTTTTCTTACCTTCCTCTTTGACC-------TTTCTATGCCAACCATTCTTATATATATATATTGCTTCTTTAATAAAAGCAAATTCCTGTTACATTATTGCAAAAAACTTAATTTGAAAACCTTAAGTAGGTGTTTTAAGTTTATTGTAATATGGCTTACAGAAGAAACTAGAAATGTTGCAGATTAGTACATACT--CTAAAA a score=6522.0 s hg17.chr13_random 163965 58 + 186858 ATTTTAAGATTGT-------------------------------TATTTGCTTACTATC---ATGT-TATAAGGCTTTATTTATATGTGTATT s panTro1.chr12 22867033 58 - 117159028 ATTTTAAGATTGA-------------------------------TATTTGCTTACTATC---ATGT-TATGAGGCTTTATTTCTATGTGTATT s mm5.chr5 125448820 56 - 149219885 AT----ATACTAT-------------------------------TATTGGATTCCTTTTTAAATGT-CATATTTATTTCATTTCATGTATAT- s canFam1.chr16 42420829 90 - 60307850 ATTTTATGACTGTCTTTGATATATTTTAATTCAGGATTGATCAGTATTTGCTCAATGGC---ATGTATATGAGGCTTTATTTAAGTGTGTATT a score=1876.0 s hg17.chr13_random 164023 12 + 186858 ---ACAAATATATTT-- s panTro1.chr12 22867091 12 - 117159028 ---ACAAATATATTT-- s mm5.chr5 125448876 10 - 149219885 -----GAATATATTT-- s rn3.chr4 5155651 12 + 187371129 ---AAAAACATTTTT-- s canFam1.chr16 42420919 17 - 60307850 GAAAAAAATCTGTATTT a score=-654.0 s hg17.chr13_random 164035 6 + 186858 -GCTAAC s panTro1.chr12 22867103 6 - 117159028 -GTTAAC s rn3.chr4 5155664 5 + 187371129 -ATAAA- s canFam1.chr16 42420936 6 - 60307850 GGCAAA- a score=38950.0 s hg17.chr13_random 164041 87 + 186858 TACTAGCAAATATTTTACGTAATAACTTCGCTATTTTATTAAAATCCTG----------------------------TTTTTAAAATTCTAAAATGTCATTTTAAGTATAGGAGA s panTro1.chr12 22867109 87 - 117159028 TACTAGCAAATATTTTATGTAATAACTTCGCTATTTTATTAAAATCCTG----------------------------TTTTTAAAATTCTGAAATGTCATTTTAAGTATAGGAGA s mm5.chr5 125450497 87 - 149219885 TATTGGCAAATACTTTAT-TAGAACCTTTATTATTTAACTGAAATACTG---------------------------TTTTTTCACTTTCTAAAATGCCATTTTAAGTTCAAAAAG s rn3.chr4 5155669 114 + 187371129 TGTTGACAAATATTTTAT-TAGAACCTTTATTATTTAACTGAAATTCTGGTTTTTTTTTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTCTAAAATGCAATGTTAAGTTCAAAAAG s canFam1.chr16 42420942 86 - 60307850 GAGTGGCAAATATTTCATGTGGTAACTTTACTATTTTACCAAAATCCTG----------------------------TTTTTCAAATTCT-AATTGTCATTTTAAGTTCAGGAGA a score=21394.0 s hg17.chr13_random 164128 79 + 186858 CAGGTGAAATTGTTCAAGTTTACTACTAAAGCAGGAATAAGGAAGCTTAGATTCTCGTCCT-----TTTTTCAAAAAGAAAAAt s panTro1.chr12 22867196 79 - 117159028 CAGGTGAAATTGTTCAAGTTTACTACTAAACCAGGAATAAGGAAGCTTAGATTCTCGTCCT-----TTTTTCAAAAAGAAAAAT s mm5.chr5 125450584 81 - 149219885 CA--TGAAATCACTCAGTTTTACTACT-AACCAGAACCAAGAAAACTGGGATTCTGGTCCTTTGTGTTTTATATGAAGTAAATT s rn3.chr4 5155783 80 + 187371129 CA-CAAAAATCACCCAGTTTTACTACT-AACCAGAAACAAGAAAACTGGGATTCTGGTCCTTTGTGTTTTATATGAAGTAAA-- a score=1557.0 s hg17.chr13_random 164207 8 + 186858 tttaaaac s panTro1.chr12 22867275 8 - 117159028 TTTAAAAC s rn3.chr4 5155863 8 + 187371129 TTGAAAGC a score=1768.0 s hg17.chr13_random 164215 8 + 186858 caggctta s panTro1.chr12 22867283 8 - 117159028 CAGGCtta s rn3.chr4 5156027 8 + 187371129 TAGACTTA a score=9331.0 s hg17.chr13_random 164223 39 + 186858 ttgaggtatagttgatataag----ctatatttg--acatgtaca------ s panTro1.chr12 22867291 39 - 117159028 ttgaggtatagttgatataag----ctatatttg--acatgtaca------ s mm5.chr5 125450831 43 - 149219885 TTGAGACATAATTGATATAGGGTACATATATTTG--ACACATGCA------ s rn3.chr4 5156035 50 + 187371129 CTGAGACAAAATTGGTATAGG-TACAGAGATTTGTTACATATTCATGCACA a score=2342.0 s hg17.chr13_random 164262 14 + 186858 attccataagcttt s panTro1.chr12 22867330 14 - 117159028 attccataagcttt s rn3.chr4 5156085 14 + 187371129 CTTTAATAAGCCCT a score=1261.0 s hg17.chr13_random 164276 15 + 186858 gatatatacatatat s panTro1.chr12 22867344 15 - 117159028 gatatatacatatac a score=111666.0 s hg17.chr13_random 164327 1278 + 186858 ctgcattcccccTGCCATCCGTCCTtgtccccaagattagtttgcattttctagagttgtatataagtggaatcatacagaactgtatgctttttggactgatttatttcagcacaattatttggagattcatctatgctgttgtacttgttaacagtgtactcccttttcttgctgagtattaataaaactgtggatgcaccacggCTGTAGACCTGTGCAC-tttttttcttc--------ttctttttttttttctgagacaggttgtcgttctaattcctggctggagtgcagtggtgcgatcatagctaactccagcttcgacctcccacctctgtctcccaagtagctgggaccatagctgtgtgccaacacacccaactacttttttaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgaacttctgagctcaagcaattttcccaccttggcttcccaaaatgctgggattacaggcgtgagtcacAAT-TCCCCAgcctgtagtcttacattcttgtaatgtcttcgtctggttttggtatcagcataactccagcttcatagaatgaatcagaaagtatattctcctcttcagttttctggaaaagttgtgtagtagtggaaatgtatcttc-----ttatacatgaatttattagtgaaaccatcttggcctgaaattttctttgtgggggggtttttgttgtgttttcttttttttttctttctttcttttgagatggagtttcgctcttgttgcc---taggctggagtgcaatggcacaatctcagctcatgcaaccactgcctcccag-gctcaagtgattcccctgcctcagccccctgggtagctgggattacaggttcctgccaccatgcctagataa----tttctttttttgtatttttagtagagacagtttttcaccatgttggccaggctggtctcgaactcctgacctcaggtgatccacctgccttggcctcctaaagtgttgggattacaggcatgagccaccatgcccaggctggagtgcagtggcgtgatctctgctcactacagcctccacctcccaggttcaagcaattctcctgcctcagccttctgagtagctgggattactggcatgcaccaacatgcctagctaatttttgtgttttgggtagagatggggttttgccatgttggccaggctggtcttgaactcctgacttcaggtgatccgtctcccaaagtgctgggattactggatgagccaccagtgcccagcct s panTro1.chr12 22867437 1300 - 117159028 ctgcattccccctgccatccatccttgtccccaagattagtttgcattttctagagttgtatataagtggaatcatacagaactgtgtgcttttgggactgatttatttcagcacaattatttagagattaatctatgctgttgtacttgttaacagtgtacttccttttcttgctgagtattaataaaactgtggatgcaccacggttGTAGACCTGTGCACttttttttcttcttttttttttttttttttttttctgagacaggttcttgttctaattcctggctggagtgcagtggtgcgatcatagctaactccagctttgacctcccacctctgtctcccaagtagctgggaccatagctgtgtgccaacacacccaactacttttttaaaatttttaatagagacagcatctcactatgttgtccaggctggtctcgaacttctgagctcaagcaattttcccaccttggcttcccaaaatgctgggattacaggcgtgagtcaccatgaccccagcctgtagtcttacactcttgtaatgtcttcatctggttttggtatcagcataactccagcttcatagaatgaatcagaaagtatattctcatcttcagttttctggaaaagttgtgtagcagtggaaatgtatcttcttatattatacatgaatttattagtgaaatcatcttggcctgaaattttctttgt-ggggggtttttgttgtgttttcttttttttttctttctttcttttgagatggagtttcgctcttgttgccttttaggctggagtgcaatggcacaatctcagctcatgcaaccactgcctcccagagttcaagtgattcccctgcctcagccccctgggtagctgggattacatgtgcctgccaccatgcctggctaatttttttttttttttgtatttttagtagagacagtttttcaccatgttggccaggctggtctcgaactcctgacctcatgtgatccacctgccttggcctcccaaagtgttgggattacaggcgtgagccaccatgcccaggctggagtgcagtggcatgatctctgctcactacagcctccacctcccaggttcaagcaattctcctgcctcagccttctgagtagctgggattactggcatgcacaaacatgcctagctaacttttgtgttttgggtagagatggggtttcgccatgttggccaggctggtctcgaactcctgacctcaggtgatccatctcccaaagtgctgggattatgggatgagccactggtgcccagcct a score=121913.0 s hg17.chr13_random 165605 695 + 186858 gtgggacagtttttaacaacaaattttatttctttaataggtac---ctatttaggttatctgtctctccttgcataaatttgcatctttcaagaaatttgttcattttgtctatcttgacaaattaaaggaatggagttgatcataatgtttcttattattttaatacctgtagaatctgtagtgatttcaccttcctcattcttgatactaataatttgtatcttgtcttatttttttcctgatcagtctggctagagatttatcagtcttattgatcttcttgagtcagcctttgttttcatggacttttctctattttctttcctctttct---gttttattgatttatattctcatctttattttttcctatcttctcactttgagtttaatttgatcttctttttttg-tttACTCTTACGTGTCCCTGTTTGGAAGG--GACACTTGTGAAGTTTAGGTCAGAGCTTTCTATTCTCCTTGGCTTATATCTGTGGTCTGTCTAGGAAAATGAAATTTCTATCACCTTCTGGATAAATCACACTATTATCTATGCAGGCAACAATAGCACATATTTTCTCAAAGATTAC---CTTTGCCCTCAAGTTAGGTTTTATTTTTCTAGCAGTCTAAAGGTCATGaaataaattataaaataaaaaCAGTGGGTCTTCAAGCTAGATGATACTGTTTTCTTTCTTGC s panTro1.chr12 22868737 691 - 117159028 gtgggacagtttttaacaacaaattttatttctttaataggtac---ctatttaggttatctgtctctccttgcataaatttgcacctttcaagaaatttgttcattttgtctatcttgacaaattaaaggaatggagttgatcataatgtttcttattattttaatacctgtagaatctgtagtgatttcaccttcctcattcttgatactaataatttgtatcttgtcttatttttttcctgatcagtctggctagagatttatcaatcttattgatcttcttgagtcagcctttgttttcatggacttttctctattttctttcccctttct---gttttattgatttatattctcatctttattttttcctatcttctcactttgagtttaatttgatcttctttttttg-tttACTCTTACGTGTCCCTACTTGGAAGG--GACACTTGTGAAGTTTAGGTCAGAGCTTTCTATTCTCCTTGGCTTATATCTGTG----GTCTAGGAAAATGAAATTTCTATCACCTTCTGGATAAATCACACTATTATCTATGCAGGCAACAATAGCACATATTTTCTCAAAGATTAC---CTTTGCCCTCAAGTTAGGTTTTATTTTTCTAGCAGTCTAAAGGTCATGaaataaattataaaataaaaaCAGTGGGTCTTCAAGCTAGATGATACTGTTTTCTTTCTTGC s canFam1.chr16 42423433 656 - 60307850 atggaaagattcttaactatatattcagtttctctggtaggtatgtgctatttaggttatcta----tccttatacgaatttg--tctttcaaggaatttgtccatttcatgtaagttgacaaatcta----------ttg--------gcctattatccttataatatctgtagaatatgtaatgatgtcgccttcctcattcccaatattggtgatgtgtgtc-----------ttttcctggttggtcttgctgcaggtttctcaatcttat---tcatcttgagccagcttttgctttcatttatttttctctgttttttcccctctattttagatttcattgatttccactttgatcttgactgttttct-tcctctcactttgagttcaatttgctctccttttttttcttTATTTACTTATGTTTTTGCTTGGAAATCCCCCACTTTTGAGGTTTGGGTTAAAGCTTTCTTTTTTCTTAGGCTTATATCTGTG----GTCCGGCCAAATAAAA---CTGTCACTTTTAGGATAAATCAGACTAAGATGTATGTAGGCAATACTAGGAC--ACTGTCTCAAAGATTGCCTTCTTTACCCTTAGGTTAGGGTTTATGTATCTAGTAATTTAAAGGTCATGAAATAAAGTATAAAATGAAAACAGTGGGTCATTAAGCTACATGATAGTGTTTTC---CTTAC a score=5582.0 s hg17.chr13_random 166300 32 + 186858 ATGGACAATTATT-TTAAAATATTTTGGTTTTT s panTro1.chr12 22869428 32 - 117159028 ATGGACAATTATT-TTAAAATATTTTGGTTTTT s canFam1.chr16 42424089 33 - 60307850 ACATGCAATTGCTGTTTAAAAACCTTGATTTTT s fr1.chrUn 106167081 32 - 349519338 AGGGACTTTTATT-TGAAGATACTGACCTGTTT a score=5239.0 s hg17.chr13_random 166332 31 + 186858 CTGCACTTATTATTTAAATATGACTCCCCAC s panTro1.chr12 22869460 31 - 117159028 CTGCACTTATTATTTAAATATGACTCCCCAC s canFam1.chr16 42424325 28 - 60307850 TTTTTTTTTTTTTTTAAGT---ACTTACAAT s fr1.chrUn 106167113 31 - 349519338 TTCCTCTTCTCTTTTAAATACAGGTCATCAC a score=37212.0 s hg17.chr13_random 166363 256 + 186858 CCACAC---TTGAATCTA-GGGACATTGTAGTTTTCTACTGCAGACTTTGTTTCTGGTTTATACTGGGAATA-----------TATTGTTTATCGTTTTCAGTGAAAGCATTCACTGTTTAAATTTCCTTTTAAAAATAATAATGGATCTTTACAATTTCTTTGAG-CTGCTCAGTGTGTATAA---------------TGTGTTGAATTTTCTGTTAGTGGTTGGGAGGTGGAAATAGATACT---------------------TTATCTCTATTTTAGCCA-TTTCCATAATTATATATCTCAATAG s panTro1.chr12 22869491 257 - 117159028 CCCCAG---TTGAATCTA-GGGACATTGTAGTTTTCTACTGCAGACTTTGTTTCTGGTTTATACTGGGAATA-----------TATTGTTTGTCATTTTCAGTGAAAGCATCCACTGGTTAAATTTACTTTTAAAAATAATAATGGATCTTTACAATTTCTTTGAG-CTGCTCAGTGTGTATAA---------------TGTGTTGAATTTTCTGTTAGTGGTTGGGAGGTAGAAATAGATACT---------------------TTATCTCTATTTTAGCCATTTTCCATAATTATATATCTCAATAG s canFam1.chr16 42424353 297 - 60307850 TTATGCTCTTTGAATCTAGGGGATATTGCAGCTTTCTA-TGCAGACTTTGTTTCTGGTTTATGCTGGGAATATTGTAGTCCATTCTTGTTTCTTATTTTGAATAAAACTGTTCTCTG----aattttattttgaaaataata------ttttatcatttatttGAGCCTATTCTCTAAGTATCATCTAATTATAGAACCTGTTTTGTTTTCTGTGTTGAAGATGGGGATGTAGAAATGGATACTTTTTATTTCAGTTTACTTTTGTTAGCTGTATTTTAGCTA-CTGCCACAGTTTCATATTGTAATAA a score=21916.0 s hg17.chr13_random 166619 142 + 186858 TCTTGTCAATGCATCATTAGTCCTATGACTGAATTAATGA-----TTACTTTCAGTAGTCACTTAATTTCTTACTGATG--ATGATGATTCTACTTCTGTGAATCAACTTGGATGATTCTCTAAAATCTTAGAAAGCTAATTTTG--------------------TTAA s panTro1.chr6_random 15555169 142 + 67355074 TCTTGTCAATGCATCATTAGTTCTATGACTGAATTAATGA-----TTACTTTTAGTAGTCACTTAATTTCTTACTGATG--ATGATGATTCTACTTTTGTGAATCATCTTGGATGATTCTCTAAAATCTTAGAAAGCTGATTTTG--------------------TTAA s canFam1.chr16 42424650 162 - 60307850 TATTTTCAGTATATCTTTAGTCCTGTGGGCGAATTACTGGTAACTTCACTTTTAGTAGACAATTA-----TTACTAATGGAATGAT-ATTTTACTT-TATGAATCATCTTGTTTGACTTGCTAAAGTCTTAAAATGCTAATTTTGAGATATACTTTTTTTTTTTTTTAA a score=7528.0 s hg17.chr13_random 166761 73 + 186858 TGCTATGCATATAACACATCAATACATTTTCTCTATTAAAAAAATTAAAGTGTT---ATAGGTAGATCAGAATTTA s panTro1.chr6_random 15555311 73 + 67355074 TACTATGCATGTAACACATCAATACATTTTCTCTATTAAAAAAATTAAAGCATT---ATAGGTAGATCAGAATTTA s canFam1.chr16 42424962 71 - 60307850 TGAGATGCACATTTTA---AAATATATTTCCTCAA--AAAAGAATAAAAACATCCTGATAATCAAAGCTGTCTATA a score=71968.0 s hg17.chr13_random 166834 451 + 186858 CCATTACTAACTCCTCAGTCCT-CCTTATTTCCCTGTTACCAGTTTGGTATATTTAT-ATAttaggttgatccatatgaaattgccaatatt-----atttctgaactgatgaaaagtagcaatttcttatgagtcaacctGTTATATGTGCCCATAGACTACATATAATGACTTTGCATGTTTTTATATTATAGTGCTATACCTCAAATACTGTTCTGCAATTTATTTTTTCACTCAACAGTGTCTTTTTGATAA--------TTTCTTTCATGGCAGTCTATACAAGTTTCTACCTCCCTACTTTTAAAATGTTTCGTACTTTCGTAATGTTTGGATTTGTCATGGCTTTACTTACTCCCTAATGATGAATATTGGCATTATTAACA-------CTTGTAGTCATTAGGGTTCATATGACTATAAATTGCTCTTATAAAGCATTAGTACTATTCATTAAAACTG---------CTTTTAg s panTro1.chr12 22869942 450 - 117159028 CCATTACTAACTCCTCAGTCCT-CCTTATTTCCCTGTTACCAGTTTGGTATATTTAT-ATAttaggttgatccatatgaaattgccaatatt-----atttctgaactgatgaaaagcagcaatttcttatgattcaacctaTTATATGTGCCCATAGACTACATATAATGACTTTGCATGTTTTTATATTATAGTGCTATACCTCAAatactgttctgcaatttattttttcactcaacaacgtctttt-gataa--------tttctttcatggcagtctatacaagtttctacctccctacttttaaaatgttgcgtaattttctaatgtttggatttgtcatggctttacttactccctaatgatgaatattGGCATTATTAACA-------CTTGTAGTCATTAGGGTTCATAAGACTATAAATTGCTCTTATAAAGCATTAGTACTATCCATTAAAACTG---------CTTTTAg s canFam1.chr16 42425033 464 - 60307850 CTTCTGCTGCCTCTTGAGTCTTGACATTTTTTCCTTTTACCTGTTTGGTGCATTTACAATAttaggttgatccatatgaagttgccaactttcaaccatttttgacctg--gaaaaacagcaa---cttatgattgaacctaTTTTATGTGCTTGTAGACTGCACATAATTGCTTTGCATATTTTTGTACGATAGTGCTCTACCTCACATATGCTTCTGTGTCTTATTTTTCTACCCAGCTCTGTGGCGT-GGTGAAATTTTTTTTTTTTTGATGGAAATCAAAACAAATTTCTAC--CACTGTTTTTTAAATGCTGCATCTTTCCA----GTTTGGATTTGCCATGGTTTTAGTAATTCCCTAGTGATGACTATTTAGGTTGCTTACAGTTTTCTCTTACAGTCTTTAGACTTATTATGACTGTCAATTGCTTTTATG----GTTGGTTCTAT--AATAAAACAGTAGTGCAGTCCATTAG a score=27402.0 s hg17.chr13_random 167285 310 + 186858 gctgggcatggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcggatcatgaggtctggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagccgggcatggtggcaggcgcctgtagtcccagctactcaggaggctgaggaaggagaatgccgtgaacctgggagacagagcttgcagtgagctgagattgtgccactgcactccagcctgggtgacatagcaagactccatctcaa----aaacaaacaaacaaaaaaccaaaaaaaa s panTro1.chr12 22870392 314 - 117159028 gctgggcacggtggctcatgcctgtaatcccagcactacaggaggccgaggtgggtggatcatgaggtctggagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaaatacaaaaaattagctgggcatggtggcaggcgcttgtagtcccagctactcgggaggctgaggcaggagaatgccgtgaacctgggagacagagcttgcagtgagctgagattgtgccactgcactccagcctgggtgacatagcaagactccatctcaaaaacaaacaaacaaacaaaaaaacaaacaaaa a score=7484.0 s hg17.chr13_random 167595 35 + 186858 CACTGCTTTTAAATGTATTTGTATTGAAAAATACT s panTro1.chr12 22870706 35 - 117159028 aacTGCTTTTAAATGTATTTGTATTGAAAAATACT s canFam1.chr16 42425497 35 - 60307850 AACTGCTTTTAATCTTATTTGCACTGAAAAATATT a score=23374.0 s hg17.chr13_random 167630 280 + 186858 GAGATGTAGTC---CTATTTAGTTAACCAACCAACCTTCCTTCCTTCCTCTTTttttttctttttcttttttttttttttttggagacagggtctctctctgtcacccaggctggagtgcagtggcgtaatcttggctcactgtaacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgagactacaggcatgtgccaccacgctcggctgttttttgtatttttggtagagacaggatttcaccatgttgcccaggctggtc s panTro1.chr12 22870741 271 - 117159028 GAGATGTAGTCCTTCTATTTAGTTAACCAACCAACCTTCCTTCtttcctctttt------------tttttttttttttttttgagacagggtctccctctgtcacccaggctggagtgcagtggcgtaatcttggctcgctgaaacctctgcctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgagactacaggcgtgtgccaccacgctcggctgttttttgtatttttggtagagacaggatttcaccatgttgcccaggctggtc a score=-23.0 s hg17.chr13_random 167913 2 + 186858 AT s galGal2.chr2 141530096 2 - 147590765 AG a score=543.0 s hg17.chr13_random 167915 6 + 186858 GCCAGG s galGal2.chr2 141530098 6 - 147590765 GGCAGG s fr1.chrUn 106167534 6 - 349519338 GTCTGT s danRer1.chr24 4058671 6 + 23152154 GACTGC a score=118202.0 s hg17.chr13_random 167921 57 + 186858 TTGCCTGT-CTCAGTGTGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAA s panTro1.chr12 22872541 58 - 117159028 TTGCCTGTTCTCAGTGTGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTAAA s mm5.chr5 125452625 58 - 149219885 TTGCCTGTTCACAGTGTGGTCAATGTTACCATCCATACTGTGTCAGTATTAAGGTAAA s rn3.chr4 5157834 58 + 187371129 TTGCCTGTTCACAGTGTGGTCAGTGTTACCATCCATATTGTGTCAGTATTAAGGTAAA s canFam1.chr16 42426902 58 - 60307850 TTGCCTGCTCTCAGTGTGGCCAGTGTTACCATCCGTACTGTGTCAGTATTAAGGTAAA s galGal2.chr2 141530108 58 - 147590765 TTGCCTGCTCTCAATGCGGTCAGTGTTACCATCCATACTGTGTCAGTATTAAGGTGAG s fr1.chrUn 106167540 58 - 349519338 TGGCCTGTGCCCAGTGCGGCCAGTGCTACCATCCATACTGCGTAGGCATCAAGGTACA s danRer1.chr24 4058677 58 + 23152154 TTTCCTGCTCCCAGTGCGGCCAGTGCTACCACCCCTTCTGCGTCAATATTAAGGTAAG a score=1034.0 s hg17.chr13_random 167978 9 + 186858 CATCCTTAA s panTro1.chr12 22872599 9 - 117159028 CATCCTTAA s mm5.chr5 125452683 9 - 149219885 TGTGCTTAG s canFam1.chr16 42426960 9 - 60307850 TAGACATAC s galGal2.chr2 141530166 7 - 147590765 --TGCTTTG s fr1.chrUn 106167600 9 - 349519338 TATGTTTGA s danRer1.chr24 4058735 9 + 23152154 GCTCCCCAA a score=-2259.0 s hg17.chr13_random 167987 4 + 186858 AT----TG s panTro1.chr12 22872608 4 - 117159028 AC----TG s mm5.chr5 125452692 8 - 149219885 ATTAAATG s canFam1.chr16 42426969 4 - 60307850 AT----TT s galGal2.chr2 141530173 7 - 147590765 TT-ATTTG s fr1.chrUn 106167609 4 - 349519338 GT----TG a score=1220.0 s hg17.chr13_random 167991 4 + 186858 AGTT s panTro1.chr12 22872612 4 - 117159028 AGTT s mm5.chr5 125452700 4 - 149219885 AGTT s canFam1.chr16 42426973 4 - 60307850 AAAT s galGal2.chr2 141530180 4 - 147590765 AGAG s fr1.chrUn 117249413 4 + 349519338 ACTT a score=-4314.0 s hg17.chr13_random 167995 13 + 186858 AACAAATATGTAC s panTro1.chr12 22872616 13 - 117159028 AACAAATATGTAT s mm5.chr5 125452704 13 - 149219885 AAAGTATTTTTAA s rn3.chr4 5158205 9 + 187371129 AAGGCATTT---- s canFam1.chr16 42426983 9 - 60307850 AAAATGTAT---- s galGal2.chr2 141530190 9 - 147590765 TAATTACAC---- s fr1.chrUn 117249417 13 + 349519338 CAAACATGATTAC a score=582.0 s hg17.chr13_random 168008 77 + 186858 TGAATTTTTATTTGGTTTTAGTAGTAACATGAGC--TCCCAGTTCTCACA-----------------------ATTAAGTAT-----------TATGA------------------------------TTATTAAACATATGT s panTro1.chr12 22872629 77 - 117159028 TGAATTTTTATTTGGTTTTAGTAGTAACATGAGC--TCCCAGTTCTCACA-----------------------ATTAAGTAT-----------TATGA------------------------------TTATTAAACATATGT s mm5.chr5 125453210 116 - 149219885 TGAGTTTTTATTTTGTTTTATCACTAATATGGTT-GTCTCAGTTCTTAAG-----------------------ACTAATTATCTATTAT---ATATAATATGCCAATATTTAAATCAAGTATTTGTTCTTATTATGCATATGT s rn3.chr4 5158214 117 + 187371129 TAAATTTTTATTTTGTTTTAGCAGTAATACAGTTTGTCTCAGTTCTTAAA-----------------------ACTAATTATCTGTTAT---ATATAATATGACAATATTTAAATCAAGCGTTTGCTGCTATTATGTTTATGT s canFam1.chr16 42426992 52 - 60307850 TGAAATTTGAT-----------------------------ATTTCTTATA-----------------------ATTAATCATTTGC-------TAGGA------------------------------TTATTAGAC--ATGT s galGal2.chr2 141530199 111 - 147590765 TGTTTTCATATTGTACTTTAATAGCACTATGCTG--CCTTTGGTTTTGTGGTAATTAAGGGAGTCATTAACTTGTTAGATATTCTTCAGCTAATGTGA------------------------------CCATTATTTGTATGC s fr1.chrUn 117249430 64 + 349519338 TG---------TAGGTTTGGGCAGTTATATG-----TTTCAGAT-TCATG-----------------------ATTCAGCCA-----------TACGT------------------------------CTGTTACACATGCAT a score=25178.0 s hg17.chr13_random 168085 247 + 186858 GAC-------AGTATTTA---AGCACTTTAAATACTG-CTTTTAAGGGTTTCCTATCTGA--AGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAG-----------------TA-AAACATAAAAATATATGCATTTAA--------TTTAAAAGACAATTTATA---CTA--TTCACAAAGATTTTAGGTTTAGCTGA-TTCATTTTGTCTGTTGAT------TTAAAAAGCTGA---GAACTGGAGTATTTAGTAAAAA---------ATTATTAGCCTA s panTro1.chr12 22872706 247 - 117159028 GAC-------AGTATTTA---AGTACTTTAAATACTG-CTTTTAAGGGTTTCCTATCTCA--AGAAATTTGCTCCTCTATAAA-------TCTTATATTGTACTAA-TATCCTGCTTTTGTCTTGAAAAAG-----------------TA-AAACATAAAAATATATGCATTTAA--------TTTAAAAGACAATTTATA---CTA--TTCACAAAGATTTTAGGTTTAGCTGA-TTCATTTTGTCTGTTGAT------TTATAAAGCTGA---GAACTGGAGTATTTAGTAAAAA---------ATTATTAGCCCA s mm5.chr5 125453326 215 - 149219885 GGC-------AGTATTTT---AGTACTTTTAATACTG-TTTCTAAGTGT----TACTCCG--ATAAATTAGTTC--CTAAAAATCTGTGTTCTTGATTTATGCAAATTATCCTGGCAGTGTATTGGAAAGG-----------------CA-TAAAATGTAGATATTTACTCTT---------------AAAACAGTTTATT---TTA--TAATTATATACTGAGAGGTTAGTTTACTTCATTCTGT-TGTT---------------------------CTTGACTAT---------A---------TTCGTGTGACTG s rn3.chr4 5158331 224 + 187371129 AGC-------AGTATTT----AGTACTTTAAATACTA-TTTTTAACTGTTTGTTTCCTGA--ATAA--------------------------TTGATTTATGCAATGTATCCTGTCATTGTATTGAAAAGG-----------------CATTAAAATGTAGATATTTACTCTT---------------AGAACAATTTATC---CCA--TGACTGTTCACTCAGAGGTTGTCCG--TTTACTTCCTCTGTTCTTCCTTGACCACAGAACAGT---CAGTGGCTGTATTCATTC---A---------TTTGTATGACTG s canFam1.chr16 42427044 254 - 60307850 GAC-------AGtatttatttaata-tttatatattaCCTTTCAAGTGT----TAACTGA--AAAAATTAACTC--CTATAAATCTGTGCTCTTAAATTGTAGTGGTTATCCTGC---TGTCTTGAAAAAC-----------------TA-AAAATAAAAAATGCATATCTTT-------------AAAAGATACTTCATATTTTTA--TTTGTTAAGGAATGAGGTTTAGTCAA-TCCATTCTGTCGGCTGATAATA--AAAAAAAGTTGACACCAACCACAGACCTTAATAAAAA---------TCCATTCATTCA s galGal2.chr2 141530310 298 - 147590765 AACTTGTGAAAGACTTTA---A-----TTAAATGCCA-TTTTATAGTATGCATTGCCTCAAGAGAAATTAACCTTTTTGTAATTTCACAACCATAAATAGTACTGATTATCCAGCAGTTGGTTAAAATAACAGTTCGAGATATCAGCTTA-AAAGCTAAATACAAGCGAAATTAAAAACAAAGAAAAAAACGTAATGCATC---TTCATTTACTAGGGGCATAAGGTTTGGTTGA-TTCAATTTGTCTGTTGGC------TGTCAGAATTGACAGCAGTTGGAGTGGTTAATTAATACATTTTTCTTTCATTAGTCTA a score=16849.0 s hg17.chr13_random 168332 61 + 186858 TTCTGTTCTTTACCGCATTCTCTCTCCTCTGTGCTCACTCATATACAAAATGACATTTTCT s panTro1.chr12 22872953 61 - 117159028 TTCTGTTCTTTCCCACATTCTCTCTCCTCTGTGCTCACTCATATACAAAATGACATTTTTT s mm5.chr5 125453541 53 - 149219885 CCCATGTCTCTCCCACATTTAGGTTCCTCAGCCCTTCTTCACAT--------ACATTTTCT s rn3.chr4 5158555 53 + 187371129 TCCATGTCTAGCCTACATTTAGATTGCTCATCTCTTCCTCACAA--------GCATTTTCT s canFam1.chr16 42427298 60 - 60307850 -CCTGTCCCTTCCCATGTTCATTCTTCTGAATCCTCACCTGTATATGAAAGGACATTTtct a score=11849.0 s hg17.chr13_random 168393 43 + 186858 CCTTATAGCCAAAAGAAACAAAACAAGTGT--CATATTTAATGCA s panTro1.chr12 22873014 43 - 117159028 CCTTATAGCCAAAAGAAAGAAAACAAGTGT--CATATTTAATGCA s mm5.chr5 125453594 43 - 149219885 CCTTATATCTAAA--GAACAATGTTAGTACTATATATTTCATGCA s rn3.chr4 5158608 41 + 187371129 CCTTACATCTAAA--AAACAAAGCAAGTAC--TATTTTTAATACA a score=91.0 s hg17.chr13_random 168436 1 + 186858 A s rn3.chr4 5158649 1 + 187371129 A a score=57055.0 s hg17.chr13_random 168436 615 + 186858 ATTGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGTGGAACCTTTTAAGTGGTATCGTGTGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCACTAGTTGTATCTAAGGTTCTTGGTTTTTTCTTTTTAAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTGGAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAAACTGTATACTCCACAAGGAAATCTTTTCTAGTATTGCCATACCATGTAATATAAATACTAACCTCAGTTTCAATAATAGGTTGTGAACCATGAGTGATTTTTATACCATTCTCCCCTGCCCTTCAGACATCACTGTGTTATATCATTGTCAGTAAAATGTCAGTATAGTAAGCAAATCAACATTATCTCCTTCAGACTTCTTTGTTGATAACTACACTAGTATTTATTTTATAGGGTAATACAGGTTTTTGTGAATTTAGGAATCAAAATGAAAGATTGTAATTAATACTATCCAAAATAGAAGACTAGTACGGTTAATTTATGTAGTTTTTTAAAATTAGTTGCTCATGGTATGTGACTGA s panTro1.chr12 22873057 615 - 117159028 ATTGGTAATAATCGAGAGTCAGCACTGCTCACTTTCAAGCATTTCAGGATAGAGGCTTTCTGGGGAACCTTTTAAGTGGTATCGTATGCTTGGTTTTAAATATGGACAGGTCTCAATACTTCACTAGTTGTATCTAAGGTTCTTGGTTTTTTCTTTTTAAGAACTCAGTCTTAATAAAACTTACATATTTGAATAAAGTGTCATGGCCACTGGAAGCAAGCATGGAGGTATAGCTGTACAGCAGAGGTCTTAAACTGTATACTCCACAAGGAAATCTTTTCTAGTATTGCCATACCATGTAATATAAATACTAACCTCAGTTTCAATAATAGGTTGTGAACCATGAGTGATTTTTATACCATTCTCCCCTGCCCTTCAGACATCACTGTGTTATATCATTTTCAGTAAAATGTCAGTATAGTAAGCAAATCAACATTATCTCCTTCAGAATTCTTTGTTGATAACTACACTAGTATTTATTTTATAGGGTAATACAGGTTTTTGTGAATTTAGGAATCAAAATGAAAGATTGTAATTAATACTATCCAAAATAGAAGACTAGTACGGTTAATTTATGTAGTTTTTTAAAATTAGTTGCTCATGGTATGTGACTGA a score=21786.0 s hg17.chr13_random 169051 224 + 186858 AAAACACAGAGTATATAAAGCCAATTAAAAATGGAGTTATATATGCATAAAACATGTTTCTTTT--CTTCTTTGTACTTTATATTCTGTATAAAAGTAGCTGCTATCATTAGATTTTGTTTTTTAGAATACTTAATGTTTTGGACCTAAGGAAATTGAATAAGATCCCTTTCAAGGT------------------------AGTAATGT---------------------------------------------------------------------------------------ATTTCTTTTAACCCATCCAACAATTACCGaattcccatttt s panTro1.chr12 22873672 226 - 117159028 AAAACACAGAATATATAAAGCCAATTAAAAATGGAGTTATATATGCATAAAACATGTTTCTTTTCCCTTCTTTGTACTTTATATTCTGTATAAAAGTAGCTGCTATCATTAGATTTTGTTTTTTAGAATGCTTAATGTTTTGGACCTAAGGAAATTGAATAAGATCCCTTTCAAGAT------------------------AGTAATGT---------------------------------------------------------------------------------------ATTTCTTTTAACCCATCCAACAATTACCGAATTCCCATTTT s mm5.chr5 125453651 302 - 149219885 AAATCCCAAATTATTTAATGCCAGTTTAAAA-AAAGTTATACATGCATAGGAGAAACTATTT----CTTCATGTGTCTTCATATTC-----AAATGT-GTTG--------AGATTTGA--CTCCAGAAAACT------------ATTGAAGAAATCAAATATGATTCCTTTCAAGATGTGATTGTAAAGTTTTATGAACCCAATGATGTCTTAATATAGCCATTTCCCTTGACTACCATGATAGCAGTTTTTGGAGGAAAGCTAAGATTTAGAGATATTACCCAGAACTTCTGTGGATTTCTTTTAAGTAACCCATCCATTTCC--ATTTCCATTTT a score=6948.0 s hg17.chr13_random 169275 78 + 186858 acagatgagtacgacttacataagttaagATTGGACAATTAGTGCACTATCAGACATCTAGTTATTCCTGTTTTTAAA s panTro1.chr12 22873898 78 - 117159028 ACAGATGAATACGACTTACATAAGTTAAGACTGGACAATTAGTGCACTATCAGACACCTAGTTATTCCTGTTTTTAAA a score=9341.0 s hg17.chr13_random 169353 63 + 186858 AATTATGTGTGGTTCCTTTTATACGAC-----ACTGTTTTGGACAGTATAGAATACTGC----AGTCTCATT s panTro1.chr12 22873976 63 - 117159028 AATTATGTATGGTTCCTTTTACGTGAC-----ACTGTTTTGGACAGTATAGAATACTGC----AGTCTCATT s mm5.chr5 125454834 72 - 149219885 AGCTATGTGTGGTGTCTTTTGTAGTATTGATAATTATTTTGGACAGAACATAATACTATATAAAGTCCTACT a score=6862.0 s hg17.chr13_random 169416 61 + 186858 GAGAAATACAGCAATATCTAGAAATATACTAGGGATATGTGAATTGGCTCAGCTTGCATTT s panTro1.chr12 22874039 61 - 117159028 GAGAAATACAGCAGTATCTAGAAATATACTAGGGATATGTGAATTGGCTCAGCTTGCATTT s mm5.chr5 125455066 54 - 149219885 AAGAAACAAAGGTATATGGAGAAATAGTCAAGGCACATCT-------TCCAGGCTTATTTT a score=65407.0 s hg17.chr13_random 169477 361 + 186858 TTATTGCAGGA--GGCAATTGTTTGTGGATAAGTTTGATACCTTTGAAGCTTCTTTTTAAGCTTGCTGGGGCAAGTCTAGAAAGCCTTCACTCTAAGGTGGATAttttcaaactttatggttttagaacc-t-----taacactct-------------------------ttaaaattactggggacgccatagtttttgttcatgaggattttaactatggactattcagcattttagaaatta-----aa----------actaggaacattttGTaacacaagactacagaagcacaacctgtacaatgtcaat---gtaatat------tatgatacaacatgtagcttctataaacaccactgtatcattgtgaataaattaaagtgaaaaaaggcaaattaaatcttagta---- s panTro1.chr12 22874100 361 - 117159028 TTATTGCAGGA--GGCAATTGTTTGTGGATAAGTTTGATACCTCTGAAGCTTCTCTTTAAGCTTGCTGGGGCAAGTCTAGAAAGCCTTCACTCTAAGGTGGATAttttcaaactttatggttttagaacc-t-----taacactct-------------------------ttaaaattactggggatgccatagtttttgttcatgaggattttaactatggactattcagcattttagaaatta-----aa----------actaggaacattttGTaacacacgactacagaagcacaacctgtacaatgtcaat---gtgatat------tatgatacaacatgtagcttctataaacaccactgtataattgtgaataaattaaagtgaaaaaaggcaaattaaatcttagta---- s mm5.chr5 125455120 334 - 149219885 TTATTGTGGCAATAGCAATTA-TTGTAGATTA-------ACCATGGAA----CTTTTTAATCTT-----------TCCAAAGAGCCTTTATTCTGAAGTTGATATTCTCATATATT-TAGATCTAAAACC-CCTAAGTAATGCTCT-------------------------TCAAAGAGATAGAGTGT------GTTGTTGTTTGTATGGGTTGCAGCTATAGAACACTTACTATTTTATAAATCA-----AA----------AT--GGAATATTTTAAAATACAAAAAAATAGAAACATTATTTGTTTAATGTTACTATGGTGATGT------CAATTTATGTCATACGGTCTCTAAAA----TACTGTACAACTGTGAATAAATTAAGGT-ATATTCAACAAATTAGCTCTTAGCA---- s canFam1.chr16 42428144 394 - 60307850 tttttgtggca--ggcagtta-ctgtagaca--ttcgaattgtttgaagcttctc--taggctttctggggtggatctagagAACCTTCACTTGGCAGTagctattctcagacttttgggtcttagaactgt-----taacactctaaaattctttttttttttttaaacactaaaattcttaaggaccctgtagagctt-----tgaggaggataattattgaatatttaccatcttagaaattactgagaatatttttTTCActgagaatattttaaaacata--aatacacaagcatatttattgtgatgtcatg-caatgatgttttatattttatatatcatgtagcctctgcaaa-------atagcactgtgattggattaaagt-aaaaaaggcaaataacatcttagttatca a score=173103.0 s hg17.chr13_random 169838 1180 + 186858 ttat--ttaaacttgttttaactttacagacccactgGGGTTCCCTAGTCCACATTTTGGTAGCTGCAGTCC--TAGCATTAGTTTAACCCTATACTTAAGACTTGGCCTTTCTGGGATCACTACTGAATTCTACCC-------------------CCTGTTCACCAGTGTCTTTGTACTCTGACTGGTTGTGCTTCACTTGTCTTTGAGCCTTTTGCAAGCTCTGGTAATTGTGCAGCTTACAAATTCCCAGTAGATGTACTTTCCCCTGGTTGTGGGTC----TTTGGGCTTCTAGAAGTACGGCTTGGTGTTCCACCAAAGACTTCAggg-gatcctttgtaggtttctggagctcttagtccttattgcttcttcattttgagtactgtgtcctgcaaatt-ccactgcctcgccttccctaacctc---------------agcgaggccattgattttactctgctgaggttctccctccctgggcagcgttctggaaaatgtttctaggcagaatatcataggact--ccctgagtgtttccttcctctcagagaccactgtct-------cctttactatgtgttgtccaatatctgaaaacagttgtttcatacactttgtccaattttctactatctta---tgggagaacaggctggtcccatctactccatTATCATTGAAGCATGTATCAGTATTAGATTATAAAACATATCTGTAACAACTTTGGACATGGTACCATGGATGGAATCCTGGATGACATCTTATTTGAAAAAACTTTTAAAACT-AAGGCTAAACTGGTTCAAC-ggaagaaaaaaatgatagtacaaccccagtacctaagttaaaa----ggaaatttcaaagagggagaaattgttgaagtgttgaagtac----cagaagtcaagaaacact--aacactaatgtttccattagatttgagaataagaaggtcttgacaagcctggcttaagcagtt---atgagtggatgtgggtgtag-agaccagactgtagtgttttgaagagtgaatataagtggagaaacttgagaGTTTGGTTGTAAAAGGGACCAC-----AGGTATCTGTGAA----GAAAACTTAGTAGGAATGAAGATAAATATTTTAAAAATTCTACCACTAAACACCTCAGATCTGTCTGCCACTTTGTCTTCAGGTCATTG----TTTAAGCCAgggtcagg-cagac-tggcccatagactaaatctggccc--------------atttcctgtgttt s panTro1.chr12 22874461 1179 - 117159028 ttat--ttaaacttgttttaactttacagacccactgGGGTTCCCTAGTCCACATTTTGGTAGCTGCAGTCC--TAGCATTAGTTTAACCCTATACTTAAGACTTGGCCTTTCTGGGATCACTACTGAATTCTACCC-------------------CCTGTTCACCAGTGTCTTTGTACTCTGACTGGTTGTGCTTCACTTGTCTTTGAGCCTTTTGCAAGCTCTGGTAATTGTGCAGCTTACAAATTCCCAGTAGATGTACTTTCCCCTGGTTGTGGGTC----TTTGGGCTTCTAGAAgtacggcttggtgttccaccaaagacttcaggg-gatcctttgtagatttctggagctcttagtccttattgcttcttcattttgagtactgtgtcctgcaaatt-ccactgcctcgccttccctaacctc---------------agcgaggccattgattgtactctgctgaggttctccctccctgggcagcgttctggaaaatgtttctaggcagaatatcataggact--ccctgagtgtttccttcctctcagagaccactgtct-------cctttactatgtgttgtccaatatctgaaaacagttgtttcatacactttgtccaattttctactatctta---tgggagaacaggctggtcccatatactccattatcgttgaagcatgtatccgtattagattataaAACATATCTGTAACAACTTTGGACA-GGTACCATGGATGGAATCCTGGATGACATCTTATTTGAAAAAACTTTTAAAACT-AAGGCTAAACTGGTTCAAC-ggaagaaaaaaatgatagtacaaccccagtacctaagttaaaa----ggaaatttcaaagacagagaaattgttgaagtgttgaagtac----tagaagtcaagaaacaca--aacactaatgtttccattagatttgagaataagaaggtcttgacaagcctggcttaagcagtt---atgagtggatgtgggtgtag-agaccagactgtagtgttttgaagagtgaatataagcggagaaacttgagaGTTTGGTTGTAAAAGGGACCAC-----AGGTATCTGTGAA----GAAAACTTAGTGGGAATGAAGAGAAATATTTTAAAAATTCTGCCACTAAACACCTTAGATCTGTCTGCCACTTTGTCTTCAGGTCATTG----TTTAAGCCAgggtcagg-cagac-tggcccatagactaaatctggccc--------------atttcctgtgttt s canFam1.chr16 42428538 1199 - 60307850 tcattatgaaaatagttttgaccttatagacccactagggtttcCTAGATCACACTGTAGTAACTGCTTTTCTATAGCATGAGTTTAAT------------ATGTGACCTTTATGACATCTCTCCCATATCCTTCCCTGCCATGAGTTCCCCATGACCTCCTTGCCAGTGTCTTTTTACT----CTGGTTGAGATTCAGATGTCTTC-AGCATTGTGTGAGCTGTTGGAATTGTTCAACTTATAAATTCTCAATAGCTCTTCTTTGTCCTGCTTGTGTGTCCTTGTTTGAcctcctatgtatgcagctcgatgtttagccaaagacttgagggaaattatgtgtagatttctggagctcttgctctttatatctccttcctttccaagactttgctctgctagttacaactgcctcagcctcccagaactctatcatgtgtcttaaactcagaccattg----taccctgctggtgttctccttcttt-ggcagcattctggaaactgtctat-tgcaaaatatcataggattcacctcacttgtttctctcttctcagaaaccacagccctgtcctgccttt--------ttgttcagtatctg-aaacaagtgtttcatatattttgccccattttctagtattttatgttgagagaaaggtctcatcccaggtacttcatcattgttgaaacagat-----------attctcAAATCTAT------CAACTTTAGACATGGTGCCATGAATGAAACCCTGGATCATTCCTTTCTTGAAACAGCTTTTGAAACTAAAAACTAAGCCAGTTCAGTAGAAAGAAAGAGTTGATATTAGAGCTCCACAAACTCTACTGGGAGCTGGGGATCTTTCAGTGGGGAAAGGTTGTCCAGACATGGCAGTGCTGCATGGAGCTCAGAGAACACATGAACACAGCAGC-----CCAGGGTCGGGAGGGAGGAGGTGTGGACCAA-TTGTCTGGAGCTGCTTACTTGAATGGTGGTGGGCATAGTTAACCAGGTTGAGGTGTGCTGGAGAATGAATAT-TGCTGAGTGACTTGGGAATTTGGCTGTAAA--GGGCCACAGAGTAGGTGTCTGTGAAATAGGAAAACTTA---GGAAAGAAGATACAT---------------------TACAGCTTGGATGTATCTCCCACTTTATCTTCATCTTACTGCCTCTCCAAGCCAGAGACAGGTCAGTCACATCACACAGGCCAAATCTGTTTCTATAAATGAAATTTGTTTTTTGTTTTT a score=19502.0 s hg17.chr13_random 171018 155 + 186858 gcaaataaacttttattgaaatatggccatgttc-tttgtttacatatatttgtagcggtttttgcaatacactggcagagtttttataaagttgcaacagatcatatggccctcaaaactttctgtttactctctggtcctttat-------------------tgaaaatatt s panTro1.chr12 22875640 156 - 117159028 gcaaataaacttttattgaaatatggccaagttcttttgtttacatatatttgtagcggtttttgcattacactggcagagtttttataaagttgcaacagatcatatggccctcaaaactttctgtttactctctggccctttat-------------------tggaaatgtt s canFam1.chr16 42429931 168 - 60307850 ataaatgaaatttgattgaaacacaactgtattcttttgtttacatatg-tcgttgtgtggtttatactgtaatggcacag---ttgtgtagtt--cacaaaccatatgCCTCACAAAG-TTTCAGAGTATTTACTGACTCTTTATACaaaaaaaaaaaaacaaaaaaaaaaGTT a score=36498.0 s hg17.chr13_random 171173 148 + 186858 tgctggctactgCTCTAAGCCACCCTGATCTTACCCCAGGCCATTTCCTTCATTTGGGCAAATAATATAC--TAACTTGGTAATCTAAGACAAATTCTTA---AAAATCAATAAGCTAatcaaaataatgaata-tacatgtttaaaaatcaaa s panTro1.chr12 22875796 148 - 117159028 tgctggctactgCTCTAAGCCACCCTGATCTTACCCCAGGCCATTTCCTTCATTTGGGCAAATAATATAC--TAACTTGGTAATCTAAGACAAATTCTTA---AAAATCAATAAGCTAatcaaaataataaata-tacatgtttaaaaatcaaa s mm5.chr5 125455546 143 - 149219885 TGCAGTTTACTGTACTATTCCACTCTGCTTTTCTTCTGGGC-----CCTTCATAT-GGTAAATAATATATTATAATTTGGTAATTTCAGACA----TTTAGATGAAATTAATATGTTAATCAAGGTAATAAGGA-GATGTGTTTAAACATCAAA s canFam1.chr16 42430099 135 - 60307850 GGCTGGTTACTCCTCTAAGCCACTCTGCTCCTCC------------TATCCATTTAGGTCAATAATATATGATAACTTGATAATCTGTGACTAA--TTTA---AAAG--AATCAGTTAatcagagtaataaatgttacatacttacaagttaaa a score=4092.0 s hg17.chr13_random 171321 22 + 186858 tgacattaaaagccttgtaatg s panTro1.chr12 22875944 22 - 117159028 tgacattaaaagcctcataatg s canFam1.chr16 42430234 22 - 60307850 tagctttaaaagccttaggatg a score=28403.0 s hg17.chr13_random 171343 309 + 186858 ggccgggtgtggtgcctcacacctgtcatcccagcactttgggaggccgaggcgggtggatcacttgagggcaggagttcaagccagcctggccaacacagtaaaaccccatctctactaaaaatacaaaaattagccgagtgtggtggctcattcctctagtcctagctactcaggaggctgagccaggagaattatttgaacatgggagccggaggttgcagtgagctgagatcacaccactgcactccagcccaggcaacagagcaagattccatctcaaaaaaaaaaaaaaaaggccttgtaatg s panTro1.chr12 22875966 306 - 117159028 ggccaggtgtggtgcctcacacctgtcatcccagcactttgggaggccgaggcgggtggatcacttgagggcaggagttcaagccagcctggccaacacagtaaaaccccatctctactaaaaatacaaaaattagccaagtgtggtggctcattcctctagtcctagctactcaggaggctgagccaggagaattatttgaacatgggagccggaggttgcagtgagctgagatcacaccactgcactccagcccaggcaacagagcaagactccatctc---aaaaaaaaaaaaaggccttgtaatg a score=1105.0 s hg17.chr13_random 171652 8 + 186858 aacaacca s panTro1.chr12 22876272 8 - 117159028 aacaacca s canFam1.chr16 42430256 8 - 60307850 actggcca a score=186961.0 s hg17.chr13_random 171660 957 + 186858 actcttgtcttactctacctccacatct---------gaggcaatcacttttaatcttttcaggtcttttttcttgtggttaatgctatagctctaaataatcaactggt--ttactgctttatcaatgctagattttgttgactttctgctatgaataaataaattctgatt--taggtcttaaaatacacctccttcc-----------------------ttctcccaa-----tatagttgtattactatgtttagttcaattaataaggtgttggttatgactcagtaaatgttcactgcagatctaaacagtatactatgagttt-------------cttttgtctttcatggagtttttaataacaagaaagtaat-------agtgactctccattc-----------------gttctttgttttt-gcctactataga---actatcatataagattattttttaaagtactgtttttttctgggagaagtcctaccctccttctagacattcccttctcctgctctgatatgtgccagtggcttctgggtgtgttgttct-----catccttaaacttccctggcctgatgtcctttgttggatctgttgatttatagatcccaagtcttccttttctttgtaatacatcttcattctgttccgcatatctctaagtaactttattagaaggagaatgaaggagctgaattttgaatcttcctgtgtctacaacgtattctgtcttcacacatagttgcttgtgtagctaggttgagaattgtactttgaaaagtattttcctg--tagaattggaaacttatac-----tcttctagcatctggagt---tgggaagttttgtgc----------------------------------cattctgatgggt----gttcctttgaatttaactcttttattttcttctctggtagcttttaggctttcat----gtacctcatgatctgaattttta---TTCTGTACCCTCATTAC--TTGCTGTTTCATTATAATGTGGGCACTTGATTGGTTCTGTCTGAGGATCCTAGTCTTTTGAGATCTTT s panTro1.chr12 22876280 956 - 117159028 actcttgtcttactctacctccacatct---------gagggaatcacttttaatcttttcaggtcttttttcttgtggttaatgctatagctctaaataatcaactggt--ttactgctttatcaatgctagattttgttgactttctgctatgaataaataaattctgatt--taggtcttaaaatacacctccttcc-----------------------ttctcccaa-----tatagttgtattactatgtttagttcaattaataaggtgttggttatgactgagtaaatattcactgcagatctaaacagtatactatgagttt-------------cttttgtctttcatgGAGTTTTTAATAACAAGAAAGTAAT-------AGTGACTCTCCATTC-----------------GTTCTTTGTTTTT-GCCTACTATAGA---ACTATCATATAAGATTATTTTTTAAAGTACTGGTTttttctgggagaagtcctaccctctttctagacattcccttctcctgctctgatatgtgccagtggcttctgggtgtgttgttct-----catccttaaactt-cctggcctgatgtcctttgtcggatctgttgatttatagatcccaagtcttccttttctttgtaatacatcctcattctgttccacatatctctaagtaactttattagaaggagaatgaagcagctgaattttgagtcttcctgtgtctacaacgtattctgtcttcacacatagttgcttgtgtagctaggttgagaattgtactttgaaaagtattttcctg--tagaattggaaaattatac-----tcttctagcatctggagt---tgggaagttttgtgc----------------------------------cattctgatgggt----gttcctttgaatttaactcttttattttcttctctggtagcttttaggctttcat----gtacctcatgatctgaattttta---ttctgtaccctcattac--ttgctgtttcattataatgtgggcacttgattggttctgtcTGAGGATCCTAGTCTTTTGAGATCTTT s mm5.chr5 125455689 925 - 149219885 ACCTCAGTCTTATTA-AGCTCTATATCT---------GTAGCATTCA--TTTACTCTTTTCACGGGTCTTATTTTGTGGGTCATTCTCTAGTTCTAAGTAGTAAGCTGGTG-TCACAGCTTGAGCAGTGTCTGACATTGCTGACTCATTACTCTGAATAATCACATTCAGGTTTGTAAATTCAGGTATATAATTCCTTCC-----------------------TTCCTATTACATTTTATGGTAGTGTGTCACTGGACAGTTGATGCAGAAAAATACTGGCTATCATGCAGAAAATGTTCACTGTAATTCTAAGTAAGGAAATGTGG-----------------CTTTTGTCTTTTCTGG-GTTTTTAATAGCAAGAAGACCATAATCATGAGTAACTCTCTATTCTT--ATT--------TTATTGTTTGTTTTTAGCCCACTGCACATACACCATCCTATCAGATTAATTTCTCAAATGCCA---TTTCCCTGGGGTAGT---------GTTCTGTA-------TTGCCTTGCTCTAATC--TGCCCACAGCATCT-GACATGTGGTCCCTTGCACATCCTTAACTTG-CCTGCACACA-GTCCTTTG--------------------------------CCCTTTTCTTGGAACATATTCTTACTCCATTCCATATATTTCTAGCT------------------------GAGCTAAATTTCT--TCCTCATGTGTGTGACTGACAGTCTGCCTTTTTACTTAATGACTCACGTAGCTAGGTTAGCTATTATGCTT-----AGTAGTTGTCTGCATAAGAATGGATA-TCGTACGACTGTATTTTAACGTTTGGGGTAGATGGAAAGTTTTGTGCTTATGAACCTTTGTACTTTTGCAACAAATAAAGACATTCTTATAGACATCAATTCCTTTTAAATGAATTCTGTTTCTTTCT----CAGTAGTTTTTAGGCTTTCTC----ATTCCTCATGATCTGAGATCTCATAGTTCTTTTCTCTATATACCTTTCCTGTTTC-CTATTCTGTTGTCA---------------CTGGGAAATATATGCTTTTGAAGTTGAT s canFam1.chr16 42430264 1012 - 60307850 gcccctgtcctactctgcctcaacatttcagtccttccaggcagccacgtctgatccttgcaggtctt---tctagtagttaccttgatagttctaaataacaggctggtgttccctgctgtatctgtgttagatttcattgactttctgctaggaataaatatatgctgatt--taggtcttcaaacatacccccccccccccccccccccgttccccagcatccttccag-----tgtagttgttctactatgtttagttaat---aaacagtgtcggttatgactcagcacatattcactggagacctgaatagtatactctggctttgtccttttttttggctttgtctttcatggaatttttaatagaaaaaagaaagt-------aatgattcatgattcttcaattagtttttgttgtgttttgttttt-acctactatagaagcatgatcgtatcaaatgattctggcaagtaact-ttttacctggaaaaagtcctaccc--cttcccgacactcccattttct-ctctg---tgtgctggtagcttgtaggtctcttgctcagcgctcattcttcagcttctctgagctgaggtcctatgttgggttcatcgtttcctgcatcacatgactttcttgttcttggtata-accctcatttccttcctcatgtccttacct----ccattccaagaggtgtttgggagctgaagtttgagtctttgtatccctaaaggaattacacttttcacacttaattgcttgtttc-cttggttaagaactgtatcttgagaagtttattccta--tacatttggaaactgctac---tctattttagtatccagagt---tggaaagtttgatgc----------------------------------cattttgatggtt----gttcctt---acttagctttcttattttcctctcaggtagcttttagactttcttattaatacctcatgatctcaattttta---TTCTGTATTTTAATTGC--TTGCTGTCTCATTATAACACAACTACATTG-TGGTCTTGTCTATAAATTCTAGTGTTTTGAGAGCTTT a score=31317.0 s hg17.chr13_random 172617 154 + 186858 AAGAAG----------TTCCGCAATCTTAATATTACATGGTGTGGCTTCCTTCAGTTGTTTGTTAGGGATTTGGAGATTCCCAAATAT-TCTGCTAACTTATACCCTTGAGAGAGGGGAGAATAAACAGAGGGGTGAATGTGAACTTCAGAATTCCTAGCTTCAT s panTro1.chr12 22877236 154 - 117159028 AAGAAG----------TTCCGCAATCTTAATATTACATGGTGTGGCTTCCTTCAGGAGTTTGTTAGGGATTTGGAGATTCCCAAATAT-TCTGCTAACTTATACCCTTGAGAGAGGGGAGAATAAACAGAGGAGTGAATGTGAACTTCAGAATTCCTAGCTTCAT s mm5.chr5 125456754 156 - 149219885 AAAAAGGAAAAGTTTATTTCCTCACATTAATTTTTCATGGTATAGCTTCTTTGAGAATTTTATTAGGGATGTAGAGAGTCTCAAAAAT-CCTGCCGATTCAGGTCTTTCAGACAG--------AAATAAATGAGTAAAGATGAGCTATGTAAGTGCCAGCCTTAT s canFam1.chr16 42431276 138 - 60307850 ---------CATTTGGTTCCAAATTTATAATCGTATGTGGTATGGCTACTTTGAGGAGTTTATCCGAAGGATACAGATTCTCAAACTTGCCTGCTAACTTAGATTCTGTGG---------------TAGAAGAGTGA---TGAACTTCACAAGTCCCAGCTTCAT a score=-3807.0 s hg17.chr13_random 172771 162 + 186858 AGTCTAAATAGAAATCCTCTAAGATCATAAAATGT-------------------------CCCT---------------AAGAACTCATGCTTTACATTAATTTTTTTTGGTATTTTTTCTA-------------------------------TTGATTCTAAGCATGGAAAT------------------------------------------------GTAGATGGAGATTTTGTTGATGTATTTTC--AATTAT--GT-ATCAATAATAG-------------TGAAGCTTACTT---- s panTro1.chr12 22877390 161 - 117159028 AGTCTAAATAGAAATCTTCTAAGATCATAAAATGT-------------------------CCCT---------------AAGAACTCATGCTTTACATTAA-TTTTTTTGGTATTTTTTCTA--------------------------------TGATTCTAAGCATGGAAAT------------------------------------------------GTAGATGGAGATTTTGTTGATGTATTTTC-AAATTAT--GT-ATCAATAATAG-------------TGAAGCTTACTT---- s mm5.chr5 125456910 227 - 149219885 GACCTAA----AATTCCTGAAGGACCATAAAATTTTAGTATTTTGTTATGATAATTTCCCCCCTT-------TTTGGTAGGGAAACAATTGATTGCAGAGAAACTGTTTGGTAGCTTATTTAGTAGAAAAGCCATACTGTAACCCAGAAGCATTTAATCCCATTCATAGACAT---------------------------------------------ACCATGTATAAAGATTTCATTGCTGTTGTTTA-AAATCCT--GTCAATAGTAGTAG-------------GGCAGCTTATTC---- s canFam1.chr16 42431414 219 - 60307850 GGCCTA-----AAATCCTCCAAGATCATGAAATGT-------------------------CCTTGGGACATATTTTCTTGGGAATTCATGCttt--atttattttttttagatttttaaata-------------------------------ctgattttaa-tatataaatCCTTTTGCAGTATACACAGGTTTCAGAAGTATGAATTCATGAAACATCACAGATGGAAACTAGGCCAGTACATTTTCAAAACCAA--AT-AACAGTAATGG-------------GGCAATATACTT---- s danRer1.chrFinished 17874689 170 - 40167097 AGTCAAAAAATGTATGGTTTAATTTTGAAAAGTGT---------------------------------------------GGCATAATTCCATT--GTCGACCTTTCTCAGTTGGTGTTTTT--------------------------------GCATCTAATGTACTGAAAC------------------------------------------------ATACA-----ATTTTATTGATGTTCATCAAACATTTTTGGT-GCCAACTGTAGAATTATCAAAATATGAAATGTTTTTATTA a score=7023.0 s hg17.chr13_random 172933 21 + 186858 GATTTCTTTAAAATCTGGTCA s panTro1.chr12 22877551 21 - 117159028 GATTTCTTTAAAATCTGGTCA s mm5.chr5 125457137 18 - 149219885 AA---CTTTAAAATCCAATCA s rn3.chr4 5158910 20 + 187371129 GATTTCTTTTAATTTTCATC- s canFam1.chr16 42431633 20 - 60307850 GATTTCCTC-AAATCTAGTCA s danRer1.chrFinished 17874859 21 - 40167097 GCATTCTTTAACATTTCATAG a score=8011.0 s hg17.chr13_random 172954 36 + 186858 CTATATCTATAAATATAGTGGACATTAAATGTACAG s panTro1.chr12 22877572 36 - 117159028 CTATATCTATAAATACAGTGGACATTAAATGTACAG s mm5.chr5 125457155 35 - 149219885 TTATATGTGTAAAAATAATGGA-ATTAAATCTGAAG s rn3.chr4 5158930 26 + 187371129 ---------TAAACTAATTGAA-GTTATATATTAAG s canFam1.chr16 42431653 32 - 60307850 CCACATCTATAA----GGTGGACGTAAAGTGCAGAG a score=-6492.0 s hg17.chr13_random 172990 18 + 186858 CATAAG-GTAATTAT-GTGG s panTro1.chr12 22877608 18 - 117159028 CATAAG-GTAATTAT-GTGG s mm5.chr5 125457190 14 - 149219885 CATTGA-G-AAGTAT-G--- s rn3.chr4 5158956 12 + 187371129 AATATA---AAGTGG----- s canFam1.chr16 42431685 18 - 60307850 GACACA-G-AGTTAACGTGG s fr1.chrUn 117249622 19 + 349519338 CATGAGTGTATTTGT-GCTG a score=-678.0 s hg17.chr13_random 173008 48 + 186858 ACTTTAAAAAGGCATTAAAATATGTGCCATTGTCTATTACTCTGCTCA s panTro1.chr12 22877626 48 - 117159028 ACTTTAAAAAGGCATTAAAATATGTGCCATTTTCTATTATTCTGCTCA s mm5.chr5 125457204 22 - 149219885 -------------ACTCAAATG-------------GTTATGTTAATCA s rn3.chr4 5159076 26 + 187371129 ------------ACTTTCAATGCTTGT--------GTTGT--TGTTCA s canFam1.chr16 42431703 46 - 60307850 CCTAACAAAAGGCATTAAAATGTGTACCACTCT--CTTACTCTATCCG s fr1.chrUn 117249641 45 + 349519338 ---ATTTACAGCTATGAAGATGCACATTTCTATGCAATATCCTGCCTA a score=5947.0 s hg17.chr13_random 173056 90 + 186858 -GTAGGCT--CCTAAAAGCGtgta-----tgaacatgcccaaccca-gtattgggcc------------------------tccgtaggtgctca-------ataaatgttagttgattgCCCCT-TTCTG s panTro1.chr12 22877674 89 - 117159028 -GTAGGCT--CCTAAAAGCGTGTA-----TGAACATGCCCAACCCA-GTATTGGGCC------------------------TCCGTAGGTGCTCA-------ATAAATGTTAGTT-ATTGCCCCT-TTCTG s mm5.chr5 125457226 126 - 149219885 GGTGGGTG--CCTAAAAGTGTGCAGATGTGGTGTCTGTCCTATTAA-GTATTTGGGCATAGTAATGTTTACCTGCTCCTGTTCTGTATGCATGCATGTATGTATGCATGTATGTA-TGCATGTAT-GTATG s rn3.chr4 5159102 79 + 187371129 GGTGGGCT--CCTAAATGTGTGCAGA---TGAGCCTGTCCCAGTGA-GTGTTTGAGC------------------------ATAGTG---------------ATGTTTACCTGCT------CCTT-ATCTT s canFam1.chr16 42431749 94 - 60307850 -GTAGGTGGACTTGTGAGGGTCCA-----TGGACGTTCCCAGCCCAGGGGGTGGGCC------------------------CCTGTTGATGCCCA-------GTACATGTTACTTGCTTGCCTTTCCTCTG a score=3381.0 s hg17.chr13_random 173146 23 + 186858 CTTCTAGGTACATAAG-CACCA--TA s panTro1.chr12 22877763 23 - 117159028 CTTCTAGGTACATAAG-CACCA--TA s mm5.chr5 125457352 23 - 149219885 CATGTATGCATTCACG-CACAG--TG s rn3.chr4 5159181 21 + 187371129 CATGTGTGTATATAA--CACAG---G s canFam1.chr16 42431843 25 - 60307850 CTTCTAGGTCCATAAG-CACCACATA s danRer1.chr24 4060757 22 + 23152154 CTGCTAAATATATAAGCCTCCG---- a score=4741.0 s hg17.chr13_random 173169 11 + 186858 --TTAATTTATAT s panTro1.chr12 22877786 11 - 117159028 --TTAATTTATAT s mm5.chr5 125457375 11 - 149219885 --GAAATTCATGC s rn3.chr4 5159202 11 + 187371129 --GTAATTCATGC s canFam1.chr16 42431868 11 - 60307850 --TTCATTTATAT s galGal2.chr2 141531111 11 - 147590765 --TTAATTTATGT s danRer1.chr24 4060779 11 + 23152154 TTGCCCTTTAG-- a score=-12380.0 s hg17.chr13_random 173180 17 + 186858 AGTATATTTG----------ATTATGT-- s panTro1.chr12 22877797 17 - 117159028 AGTATATTTG----------ATTATGT-- s mm5.chr5 125457386 27 - 149219885 AATGTTCTAGTTAAACAAAAATGATTC-- s rn3.chr4 5159213 27 + 187371129 AGTGTCCTAGTAAAGCAAAAGTGATTT-- s canFam1.chr16 42431879 17 - 60307850 CATGTAAACG----------GAGGTGT-- s galGal2.chr2 141531122 11 - 147590765 ACTG----------------ATTGTAC-- s fr1.chrUn 117249744 16 + 349519338 GGTGTCTTTG----------ATC-TGT-- s danRer1.chr24 4060790 12 + 23152154 -----------------ACTATTGTTTGA a score=331496.0 s hg17.chr13_random 173197 296 + 186858 TAGGTT------AATGCATA----AATCACATGGATTGGTTGTT-TCTTTTACAGATCACTAAAGTGGTTCTTAGCAAAGGTTGGAGGTGTCTTGAGTGCACTGTTTGTGAGGCCTGTGGGAAGGCAACTGACCCAGGAAGACTCCTGCTGTGTGATGATTGTGACATAAGTTATCACACCTACTGCCTAGACCCTCCATTGCAGACAGTTCCCAAAGGAGGCTGGAAGTGAAGTGCAAATGGTT-------------------------------------CTCTAGGGTTTGT---TTGCC----TTGTTAGTCTTTCAAGTTCAGAGCTT----TCTCATACCA---------CTTTAGTT s panTro1.chr12 22877814 291 - 117159028 TAGGTT------AATGCATA----AATCACATGGATTGGTTGTT-TCTTTTACAGATCACTAAAGTGGTTCTTAGCAAAGGTTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTGACCCAGGAAGACTCCTGCTGTGTGATGATTGTGACATAAGTTATCACACCTACTGCCTAGACCCTCCATTGCAGACAGTTCCCAAAGGAGGCTG-----GAAGTGCAAATGGTT-------------------------------------CTCTAGGGTTTGT---TTGCC----TTGTTAGTCTTTCAAGTTCAGAGCTT----TCTCATACCA---------CTTTAGTT s mm5.chr5 125457413 279 - 149219885 TAAGTTA-----AATACATAAAGCAATCACATGGGTTTTATTTT-CTTTTTCCAGATCACTAAAGTGGTTCTTAGCAAAGGTTGGAGATGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTGACCCTGGAAGACTCTTGCTATGTGATGACTGTGACATAAGCTATCATACCTACTGCCTAGACCCTCCATTGCAGACAGTTCCCAAAGGAGGCTG-----GAAATGCAAATGGTA-------------------------------------CCCTAGGATTCAT--GTTACT----TTGTCAGTCTTTCAAGTTCTGAACTT------------------------------- s rn3.chr4 5159241 301 + 187371129 TAAGTTC-----AATACATAAAGCAGTCACATGGATTTCGTTTT-CTTTTTCCAGATCACTAAAGTGGTTCTTAGCAAAGGTTGGAGATGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTGACCCTGGAAGACTCTTGCTGTGTGATGACTGTGACATAAGCTATCATACCTACTGCCTAGACCCTCCATTGCAGACAGTTCCCAAAGGAGGCTG-----GAAATGCAAATGGTA-------------------------------------CCCTAGCTCTCAT--GTTACT----TTGTCAGTCTTTCAAATTCTAAACTTCTGCTCTCATTCCG---------CTCTTGTT s canFam1.chr16 42431896 288 - 60307850 T-GGCC------ACTGTCTG----AATCACTTGCATGGGGTGTT-TCTCTTACAGATCACCAAAGTCGTTCTTAGCAAAGGTTGGAGGTGTTTGGAATGCACCGTGTGTGAAGCTTGTGGGAAGGCGAGTGACCCCGGACGGCTCCTGCTCTGTGATGACTGTGACATAAGCTACCACACCTACTGCCTCGCCCCTCCTCTGCAGACCGTGCCCAAGGGGGGCTG-----GAAGTGCAAATGGTA-------------------------------------CTCCGGGGCTTACCTCTCCCT----CCTTAAGCCTGTCCAGTGCACAGTGT----TCCCGCAGGA---------GTT----- s galGal2.chr2 141531133 278 - 147590765 TTCAC-------GGAGCAGA----GTTCAAATAATTTTCACCTTGCCATTTGCAGATTACTAAAGTGGTGCTTAGTAAAGGCTGGAGGTGCCTGGAGTGCACTGTATGTGAAGCCTGTGGGAAAGCTACAGACCCAGGAAGACTACTTCTCTGTGATGACTGCGACATCAGTTATCACACTTACTGCCTAGATCCACCCCTGCAGACTGTTCCGAAAGGAGGCTG-----GAAGTGCAAATGGTG-------------------------------------TGTTTGGTTCTGG-------------TGTCAG------AAATGCTGGCCTT----TTTTGTTCCA---------TGTCGTC- s fr1.chrUn 106167642 279 - 349519338 TAGAGC------AGCAGATA----AACCCC------TGACGGCT-GCCCTCACAGATCAACAAGGTGGTGCTGAGTAAAGGCTGGCGCTGCCTGGAGTGCACGGTGTGTGAAGCCTGTGGGCAGGCCACAGACCCAGGTCGGCTGCTGCTCTGTGACGACTGTGACATCAGCTATCACACCTACTGCCTGGACCCTCCCCTGCAGAACGTTCCCAAAGACAGCTG-----GAAGTGCAAATGGTG-------------------------------------AGCGTGGGATTGC--GTCACTCCAATTATAAATC-----------AAACGT----TCTTATTTAG---------ACTCACTT s danRer1.chr24 4060802 326 + 23152154 ------CCTGTGATCTCTGA----ACTCAAGTG---TGTGTGTG-TCTGTTTTAGATCACAAAAGTTGTGCTGAGTAAAGGCTGGCGCTGTCTGGAGTGCACAGTGTGTGAAGCATGTGGGCAGGCCAGTGACCCCGGGCGATTGCTGCTCTGTGATGACTGTGACATTAGCTACCATACATACTGTCTGGATCCACCACTGCAGAATGTACCCAAAGGCAGCTG-----GAAATGCAAGTGGTATGTATacacacacacacacacacacacacacacacTTCTCTAAAATTAGA----TGCA-----------TCTTTGGACTGCAGCCCAG----TTTTGTAGCACAGTTATGTCTTCATTT a score=-7611.0 s hg17.chr13_random 173493 26 + 186858 -TTTAAAAATTAGCCATA---CCTATTTAA s panTro1.chr12 22878105 26 - 117159028 -TTTAAAAATTAGCCATA---CCTATTTAA s mm5.chr5 125457692 5 - 149219885 ----------------------CTGTT--- s canFam1.chr16 42432184 26 - 60307850 -CTTAAGCATTAGCCGCA---CCCACTTCA s galGal2.chr2 141531411 26 - 147590765 -ACTTTGTATTTGCAATG---TCAGTTTAA s fr1.chrUn 106167921 23 - 349519338 -------CGTTTGAAGTAGACTTCGTTTGA s danRer1.chr24 4061128 23 + 23152154 TTGTGAAAGACAGCCACG-------TTTGA a score=1956.0 s hg17.chr13_random 173519 44 + 186858 -----TTGAATAATACACATATTCTATGATACATA-------CCACTAAGCAGAAA s panTro1.chr12 22878131 44 - 117159028 -----TTGAATAATACACATATTCTATGATAGATA-------CCACTAATCAGAAA s canFam1.chr16 42432210 49 - 60307850 -----CGGCATGATACATGTTTGCTGTGACAGATATCAT--GCCATGACTCAGAAA s fr1.chrUn 106167944 43 - 349519338 -----TTGAAC--------TAGTCTGTTAAATTTCTCATCAGCTGTTGGTTAAAAA s danRer1.chr24 4061151 39 + 23152154 ATGTGTTGAG------ATATATTC----ATAAACA-------TCATCAGCCAGAGA a score=91.0 s hg17.chr13_random 173563 1 + 186858 A s danRer1.chr24 4061190 1 + 23152154 A a score=2280.0 s hg17.chr13_random 173563 115 + 186858 AATTTTCACATACACATTAAATCATTTGCCCCATTATGTTCGTATGT-AGCTTCCTGAATTACAGTTACTGAATAACTAAGAAAATAAAATGGAG---ACTTTTC----GGGGGGATTTGGAT----------------------- s panTro1.chr12 22878175 115 - 117159028 AATTTTCACATACACATTAAATCATTTGCCCCATTATGTTCGTATGT-AGCTTCCTGAATTACAGTAACTGAATAACTAAGAAAATAAAATTGAG---ACTTTTC----GGGGGGATTTGGAT----------------------- s mm5.chr5 125457697 81 - 149219885 -----------------------------CTCATTCTGTGCACTTGT-AGCTTCTCAGATTTTTACACTTTAA----TACGAAAATAAACTTGAT---AC-TTTC----ACTGGGCTTTGGGT----------------------- s rn3.chr4 5159550 55 + 187371129 AATTTTTACAC---------------------------------------------------------TTTAA----CATGAAAATAAACTTGAT---ACTTTTG----TGGGGGCTTTGGAT----------------------- s canFam1.chr16 42432259 118 - 60307850 -CATGTTAGATATGCATTGAATAATTTCCCCCATTCTGTCCTCGTGT-AGCTGCTTGAATTACAGTAACTACATAACTACGTAAATAAACCTGAG---ACCTGTTGGTGGGGGGGTGTCGGGT----------------------- s fr1.chrUn 106167987 142 - 349519338 TGAAATCGCGCTTGTGTTTGGACGTGTTCTAAATGATGTATGGCTGCAAAATACCCGTTTTATTCAGCTCTGATGAGCATTGACTTCCACTAAATCCCACTTTTT----TGATGAAACCTGGTGGAATGACCTCTGCCGTCCACCC a score=1781.0 s hg17.chr13_random 173678 2 + 186858 TT s panTro1.chr12 22878290 2 - 117159028 TT s mm5.chr5 125457778 2 - 149219885 TT s rn3.chr4 5159605 2 + 187371129 TT s canFam1.chr16 42432377 2 - 60307850 TT s galGal2.chr2 141532163 2 - 147590765 TG s fr1.chrUn 106168129 2 - 349519338 TG a score=267080.0 s hg17.chr13_random 173680 187 + 186858 CAGGTGTGTTTGGTGCAGACACTGTGGAGCAACATCTGCAGGTCTAAGATGTGAATGGCAGAACAATTACACACAGTGCGCTCCTTGTGCAAGCTTATCTTCCTGTCCAGTCTGCTATTGAAACTATAGAGAAGAAGATCTTATTCTGCAATG-TAGACAATGTGATAGATATTG-----TGCTATTT---------TTTCA s panTro1.chr12 22878292 188 - 117159028 CAGGTGTGTTTGGTGCAGACACTGTGGAGCAACATCTGCAGGTCTAAGATGTGAATGGCAGAACAATTACACACAGTGCGCTCCTTGTGCAAGTTTATCTTTCTGTCCAGTCTGCTATTGAAACTATAGAGAAGAAGATCTTATTCTGCAATGAAAGACAATGTGATAGGTATTG-----TGCTATTT---------TTTCA s mm5.chr5 125457780 194 - 149219885 CAGGTGTGTTTGGTGCAGACACTGTGGAGCAACATCTGCAGGTTTGAGATGTGAATGGCAGAACAATTACACACAGTGTGCTCCTTGTGCCAGCCTGTCTTCCTGCCCTGTCTGCTGTCGGAACTACAGAGAAGAGGACCTCATTCTGCAGTG-TAGACAGTGTGATAGGTACTG-----CGCCCCTT--AACCTCCTTTGC s rn3.chr4 5159607 183 + 187371129 CAGGTGTGTTTGGTGCAGACACTGTGGAGCAACATCTGCAGGCTTGAGATGTGAATGGCAAAACAATTACACACAGTGTGCTCCGTGTGCCAGCCTGTCCTCCTGCCCAGTCTGCTGTCGGAACTACAGAGAAGAGGACCTCATTCTTCAGTG-TAGACAGTGTGATAGGTACTG-----GGCC-------------CTGAA s canFam1.chr16 42432379 196 - 60307850 CAGGTGTGTTTGGTGCCGACACTGTGGAGCCACGTCTGCAGGCCTGAGATGTGAGTGGCAGAACAATTACACACAGTGCGCTCCCTGTGCAAGCTTGTCTTCCTGCCCCGTCTGCTGTCGGAACTATCGAGAAGACGACCTCATTCTACAGTG-TAGACAGTGCGATAGGTATTG-----TGCTACTCTGGAAATGTTTTTG s galGal2.chr2 141532165 198 - 147590765 CAGGTGCGTTTGGTGCAGACACTGTGGAGCAACTTCACCAGGTTTAAGATGTGAATGGCAAAATAATTACACGCAGTGTGCTCCCTGTGCAAGTTTGTCTACCTGTCCAATCTGCTATCGCACTTACAGGGATGAAGAGCTTATAATTCAGTG-TAGGCAATGCGATCGGTAAGGATCACTACTATTCTACAGG---CTTTT s fr1.chrUn 106168131 186 - 349519338 CAGGTGTGTGACCTGCACCCAGTGTGGTGCCACCACCCCGGGCCTGAGGTGTGAGTGGCAGAAGAATTACACCCAGTGTGCCCCCTGTGCCAGCCTGGTGACGTGTCCCATCTGCCTGGTGGACTACAGCGAGGGCACCACCATTCTGCAGTG-TCGTCAGTGCGACAGGTG-GG-----CGCCGTTC---------CTCCA s danRer1.chr24 4065533 183 + 23152154 CAGGTGTGTATTGTGTACTCATTGTGGTGCCACGTCGCCTGGCTTGCGCTGCGAGTGGCAGAATAACTACACACAATGCGGCCCGTGTGCGAGTCTCACAGTGTGTCCCGTGTGCACGCGCAGCTACAGAGAGGAAGAGCTGATTCTACAGTG-CCGGCAGTGTGACAGGTGGGC-----AGCT-------------CTTCA a score=3866.0 s hg17.chr13_random 173867 10 + 186858 TCTTTTTAAA s panTro1.chr12 22878480 10 - 117159028 TCTTTTTAAA s mm5.chr5 125457974 10 - 149219885 TATCTTTAAA s rn3.chr4 5159790 6 + 187371129 TCTTT----A s canFam1.chr16 42432575 10 - 60307850 TCTTCTGCAA s galGal2.chr2 141532363 10 - 147590765 TCTGGTTAAA s danRer1.chr24 4065716 10 + 23152154 TCATGCCAAA a score=-2389.0 s hg17.chr13_random 173877 2 + 186858 GC-- s panTro1.chr12 22878490 3 - 117159028 GC-T s mm5.chr5 125457984 4 - 149219885 GCAG s rn3.chr4 5159796 4 + 187371129 GCTT s canFam1.chr16 42432585 2 - 60307850 GC-- s galGal2.chr2 141532373 4 - 147590765 GCTC a score=-1446.0 s hg17.chr13_random 173879 37 + 186858 TTTTCTCTTTGAAATGTAGC----------AAAAAAAAAAAAAAAAG s panTro1.chr12 22878493 47 - 117159028 TTTTCTCTTTGAAATGTAGCaaaaaaaaaaaaaaaaaaaaaaaaaag s mm5.chr5 125457988 27 - 149219885 GTTTCTC----AAAGGTAGT----------------AACAAACCTTA s rn3.chr4 5159800 27 + 187371129 TTTTCTC----AAATGTAGT----------------AAAAGAAATTA s canFam1.chr16 42432587 31 - 60307850 TTTTCTCTTT-AAATATAGC---------------AAAAGGAAATTG s galGal2.chr2 141532377 47 - 147590765 TTTTTGTTTCTGACTTTTTCCCCCAGTATAAAAGCATAAAGATgaag s danRer1.chrNA 340172208 37 + 390413307 CTTGTTACTAAAACAATAGT----------GAGAGAACAAAATTAAG a score=10824.0 s hg17.chr13_random 173916 64 + 186858 GAAAATAGCTTTTCCTTAATCACA--------AG----TTTTAGGTACAGAAC-TTTTTGCCTT-GTAGATTTTTAGT s panTro1.chr12 22878540 64 - 117159028 gaaaaTAGCTTTTCCTTAATCACA--------AG----TTTTAGGTACAGAGC-TTTTTGCCTT-GTAGATTTTTAGT s mm5.chr5 125458015 61 - 149219885 GAAAATTACTTTG-CTGGATTATA--------AA----TTTAGGGAACAAAAC---TTTGCTTT-CTAGATTTTTAGT s rn3.chr4 5159827 61 + 187371129 GAAAAGT-CTTTTCCTTGATCATA--------AA----TTTAGGAAACAAAAT---TTTGCTTT-CTAGATTTTTCTT s canFam1.chr16 42432618 64 - 60307850 GAAAATAACTTTC-TTCCATCTTA--------AA----TTTAAGAAACAAGACTTTTTTGCTTT-CCAGATTTTCTGT s galGal2.chr2 141532424 67 - 147590765 ggaaaggtcttgtggtaaagaacactggactgaa----tctcgg----aagtc---tttgtattatttcattcctagt s danRer1.chr22 10184608 67 + 32001892 TGACATAACTGCA-CAGAATTTCA--------GAGTTTTTTTAAATAGTGAGT-GCAATGCATA-AAAATAATTTAAC a score=0.0 s hg17.chr13_random 173980 2 + 186858 CA a score=443.0 s hg17.chr13_random 173980 1 + 186858 C s panTro1.chr12 22878604 1 - 117159028 C s mm5.chr5 125458076 1 - 149219885 C s rn3.chr4 5159888 1 + 187371129 T s canFam1.chr16 42432682 1 - 60307850 C s galGal2.chr2 141532491 1 - 147590765 t a score=-394.0 s hg17.chr13_random 173981 2 + 186858 AC s panTro1.chr12 22878605 2 - 117159028 AC s mm5.chr5 125458077 2 - 149219885 TA s rn3.chr4 5159889 2 + 187371129 AC s canFam1.chr16 42432683 2 - 60307850 AG a score=0.0 s hg17.chr13_random 173981 1 + 186858 A a score=-240.0 s hg17.chr13_random 173982 6 + 186858 -CCTAGA s danRer1.chr22 10184675 6 + 32001892 TCTTAA- a score=2826.0 s hg17.chr13_random 173983 5 + 186858 CTAGA s panTro1.chr12 22878607 5 - 117159028 CTAGA s mm5.chr5 125458079 5 - 149219885 TTAGA s canFam1.chr16 42432685 5 - 60307850 CTAGA s danRer1.chr22 10184676 5 + 32001892 CTTAA a score=3047.0 s hg17.chr13_random 173988 17 + 186858 ATCTTACAGAATTGATT s panTro1.chr12 22878612 17 - 117159028 AACTTACAGAATTGATT s mm5.chr5 125458084 16 - 149219885 AGCTT-CCGGACTACTT s canFam1.chr16 42432690 14 - 60307850 AACTTACAGAA---GTT s galGal2.chr2 141532492 17 - 147590765 gtactacagattttatt s danRer1.chr22 10184681 16 + 32001892 ATTTTACA-AATTGTTT a score=2472.0 s hg17.chr13_random 174005 12 + 186858 -TCC-----TGTTTTGAA s panTro1.chr12 22878629 12 - 117159028 -TCC-----TGTTTTGAA s mm5.chr5 125458100 12 - 149219885 -TAC-----TATTTAAAT s canFam1.chr16 42432704 12 - 60307850 -TCC-----AGTTTTGTA s danRer1.chr22 10184697 18 + 32001892 TTTCAAAAATGTTTTCAA a score=4822.0 s hg17.chr13_random 174017 15 + 186858 TTCTCAACTCCAGAC s panTro1.chr12 22878641 15 - 117159028 TTCTCAACTCCAGAC s mm5.chr5 125458112 15 - 149219885 TTTTAAATTTTAGAC s canFam1.chr16 42432716 15 - 60307850 TCTGTAATTCCAGAC a score=819.0 s hg17.chr13_random 174032 3 + 186858 TAA s panTro1.chr12 22878656 3 - 117159028 TAA s canFam1.chr16 42432731 3 - 60307850 TAA a score=26737.0 s hg17.chr13_random 174035 327 + 186858 A-----gttttgttttgttttgttttgttttgttttTAAAtttagagacagagtcttgttctgtcgccaggctggagtgcagcagcgctatcttggctcactgcaaactccacctccacctcctgggttcaagcgattctcctgcctcagcctccggagtagctgggactacaggtgcatgccaccatgcccagctaatttttgtatttttagtagagacagggtttcaccatggtggccaggatggtctccatcttttgaccttgtgatctgcccgcctcagcctcccaaagttttatgattataggcgtgagccactgtgtccACC--CAAG s panTro1.chr12 22878659 323 - 117159028 AgttttgttttgttttgttttgttttgttttgttttTAAAtttagagacagagtcttgttctgtcgccaggctggagtgcagcggcgctatctcggctcactgcaaactccacctccgcctcctgggttcaagcgattctcctgcctcagcctccggagtagcagggactacaggtgcatgccaccacgcccagctaatttttgtatttttagtagagacagggtttcaccatgttggccaggatggtctccatcttttgaccttgtgatccgcccgcctcagcctcccaaacttttatgattataggtgtgaA-----------ATCTTCAAG a score=714.0 s hg17.chr13_random 174362 6 + 186858 ACTAAA s panTro1.chr12 22878982 6 - 117159028 ACTGAA s mm5.chr5 125458127 6 - 149219885 ACTTCA a score=4594.0 s hg17.chr13_random 174368 13 + 186858 GATTTTTAATTTA s panTro1.chr12 22878988 13 - 117159028 GATTTTTAATTTA s mm5.chr5 125458133 13 - 149219885 GGCTTTCAATTGG s canFam1.chr16 42432734 13 - 60307850 GATTTTTAACTTG a score=70195.0 s hg17.chr13_random 174381 192 + 186858 GGCCTTTTTGAGGGTTTAGGAATCCCTTGAAATTAGATGGAGAATTATTGCCTTCATCTATGCCGTTTCTTATGAAGGGTTTCTGAATCTTTTAATTGATTAT-AAAAATAT----CTAACACTTTCTGTTCTCCTTAAACCACTTT-CTCTTAAAGCTCTAGATACTAGATATCTAGGTATTAGATAGCACCTTCTG s panTro1.chr12 22879001 193 - 117159028 GGCCTTTTTGAGGGTTTAGGAATCCCTTGAAATTAGATGGAGAATTATTGCCTTCATCTATGCTGTTTCTTATGAAGGGTTTCTGAATCTTTTAATAGATTATAAAAAATAT----CTAACACTTTCTGTTCTCCTTAAACCACTTT-CTCTTAAAGCTCTAGATACTAGATATCTAGGTATTAGATAGCACCTTCTG s mm5.chr5 125458146 164 - 149219885 GGGTCTTTTGGTGATTTATCAGTCCCTTGAAATCAGATACATAATTAGTGTTTGCACATACACA--TTTTTGTGGAGAATTTCTCAGTCTTTTGGTAGATTCT-AAAAATATTCTCCCTACATTCTTCTTTTTTCTC--ACTATTTCGCCCCTAAAACTTAAGA-----------------------------TCTTG s rn3.chr4 5159940 165 + 187371129 GGGTCTTTTGATGGTTTATCAGTTTCTTAAAATTAGGTGCACAATTAGTACGTGCATATATGCATTTTCATGTG-AGAATTTCTGAATCTTTTGGTAGATTCT-AAAAATGCTCTCTCTACACTCTTCTTTCTCCTC--ACCATTTCCCCTCTAAAAGTCCAGA-----------------------------TTCCG s canFam1.chr16 42432747 192 - 60307850 -TGGTTTTTAAGGGTTTATGAATCCCTTGAAATTAGATGCAGAATTATTTCCTGCATATATGCATTTTTCTTTGGAGGGTTTCTGAATCTTTTATTAGATTCT-ACAAATGAG---CTCACACATTTTATTTTCTTTAAACTTCTTT-TTCTTAAAGCTGTAGATACTAAATGTCTAGATACTGGGCACCAGCTCCCA a score=4170.0 s hg17.chr13_random 174573 63 + 186858 CCCTCCCTACGTAAT-TATGTGGAA----TTTCAAAATCAAGAATGTTTCC-TTGCTTTCATT--G-GTATA s panTro1.chr12 22879194 65 - 117159028 CCCTCCCTACGTAATCTATGTGGAA----TTTCAAAATCAAGAATGTTTCC-TTGCTTTCATT--GCGTATA s mm5.chr5 125458310 41 - 149219885 ATCTTCCTAACTAGTATGTGCAGA----------------------------CTGCTTCTGTT--G-TTTTT s rn3.chr4 5160105 60 + 187371129 ATGTTCCTAACTAG--TATGTGTAC----CTTCAAAATGCAGACTGATTCCTTTGTTTTTTCT--G----TA s canFam1.chr16 42432939 65 - 60307850 CCCTCTCTCAGTCATATGTGAGCAG----CTTCAAAATCGAGCATGTTTTCTTTGGTTTTAGT--G-GTATG s danRer1.chr22 10185096 61 + 32001892 CTGTATATAGAAAAC-TATGTAGAAATATTTTTAAA--------TGTTTTT-ATACTTTTACCTAG-GTATA a score=17548.0 s hg17.chr13_random 174636 168 + 186858 TTG-TTGTACTCT-TTAGAAGTTAAGCAGTGAACATATATTGATAGTATTATT-------TTATCAGTAGTACAGTA---------TTCTTGGGACTCTGGCTACTAATTATTTGTTCCATTGCAAGACAACTTTTTACTTTATTTCCCAATTACCATTCAACATCG-CTTTCCATGAGAT-----ATGTCT s panTro1.chr12 22879259 168 - 117159028 TTG-TTGTACTCT-TTAGAAGTTAAGCAGTGAACATATATTGATAGTATTATT-------TTATCAGTAGTACAGTA---------TTCTTGGGACTCTGGCTACTAATTATCTGTTCCATTGCAAGACAACTTTTTACTTTATTTGCCAATTACCATTCAACATCG-CTTTCCATGATAT-----ATGTCT s mm5.chr5 125458351 157 - 149219885 CTA-TCAGTATTG-TTAGCAGTTTAGCACTGAATGTACAGTGTCACCTTTGAC-------TCATTGGTGGTGCAGGA---------TTATTTGTAAGTAAGTTGTGTAGTTTTTGTAGCAAT---CGGCTACAAACTGCTCTA-------------AAGCAAGGTCC-TCTTCCTTGACATGCAGCACATCT s rn3.chr4 5160165 152 + 187371129 CTG-----------TTAGCAGTTTAGCACTGAATGTACAGTGTTAGCTTTAAT-------TCTTTGGTGGTTCAGAAACAAAACCGTGTTTCTGAATAAGGT-----AGTTTCTGTAGCACT----AGCGACACATTTCTCTA-------------AAGTAAGGTCCTCTTTACTTGACATGCAGCGTATCG s canFam1.chr16 42433004 170 - 60307850 TTAACTGTACTCTGTTAA-----TAGCACTGTCCATGTAAAAGTAGTAGTAGTAGTAGTAGTATCAGTAATACAAGA---------TTCTCAGGACTCTACCTGTCGATTCTTTGTTCAAAGGCAAGATAAGCTCCTTTTCTC-CCCCCAGTTAACATTTAGCCTCA--AATACGTGAGCT-----ACATCT a score=8343.0 s hg17.chr13_random 174804 19 + 186858 ACTTCAAGTGAGATGCATT s panTro1.chr12 22879427 19 - 117159028 ACTTCAAGTTAGATGCATT s mm5.chr5 125458508 19 - 149219885 GTTGCTCGGTAGATGCAGT s rn3.chr4 5160317 19 + 187371129 GTTCCTAGTTAGATGCAGC s canFam1.chr16 42433174 19 - 60307850 ACTCCACAGTAGACCCGTC s danRer1.chr22 10185409 19 + 32001892 ACTTTAAGTAAGATAAATT a score=70648.0 s hg17.chr13_random 174823 266 + 186858 -GCCTGGAGCCCATATATGCTAGCACTGCCATTTGCCGTTTTCTGAATACCTTTGTGTTTGCCCTAACTAGCTTCCTTG-----CTGTCTTTGAAATATTTAATATATGATGATAAAATAAT----TAGCTTCCTTATGTAATGTGC-TTTGCTTCCTC----TCTAATAGTTGTTCTCATTCC-TTTTTATTTCC---TCCTTAGCTCTATGAAAGTTTTTCT--GTTACTAGGGATAGTTAGGAGAAAAGG--------GCAAGGTAGGAGGAGCATGTGAGGCTTAGGGCTT s panTro1.chr12 22879446 266 - 117159028 -GCCTGGAGCCCATATATGCTAGCACTGCCATTTGCAGTTTTCTGAATACCTTTGTGTTTGCCCTAACTAGCTTCCTTG-----CTGTCTTTGAAATATTTAATATATGATGATAAAATAAT----TAGCTTCCTTATGTAATGTGC-TTTGCTTCCTC----TCTAATAGTTGTTCTCATTCC-TTTTTATTTCC---TCCTTAGCTCTGTGAAAGTTTTTCT--GTTAATAGGGATAGTTAGGAGAAAAGG--------GCAAGGTAGGAGGAGCATGTGAGGCTTAGGGCTT s mm5.chr5 125458527 249 - 149219885 -GGGTGGCACTCTCACACAC--ACAATTTTAATTGTACTCTTCTGTA----TTCTTGCCTGATCTGACTAGCTGCATTG-----CTATCTTTG--TCTTTCAGCATTTGCTCACCATTGGATG--CTGTCCTCCTAACAGCATGCA--TATGCTTTCTC----CTTAGTGTTTATTCTCATTCC-TTTTTCTTGAC---TTATCAGAGCAAGGATGGATCTTGTGGGTTAATAGTCATAGTTAGGGGGAAAAG-------------------GGGACATTTGAGACTTGGGGC-T s rn3.chr4 5160336 256 + 187371129 AAGGTGGCCCACTTACCTACACACAATGCCATCTGTGGTCTTCTATA----TTCTTGCCTGACCTGACTTGCTTCATTG-----CTATCTTCG--TCTTTCAGCTTTTGATCACTATTGGATA--TTGTCCTCCTAACAGCATGCT--TGTGTTTTCTCCTTACTTAGTGTTTATTCTCATTCC-TTTTTCTCGAT---CTCTCAGAACAAGGAAGGATCTTGTGGGTTAATAGTCATAGTTTTGGGAGAAGG-------------------GGGACATTTGAGACTTAGGGC-T s canFam1.chr16 42433193 270 - 60307850 -CCATGGAGCTAATATACAGGAA----ACCACTTGCAGCCTTCTGAATTCCTACATCCTTGCCCT-ACTAGCTTCCTTGCTACTCTATTTCTGATAGATTGAATATATGATCATCAAACGTTACTCCATCCTCC-------ATGTGCTCTTGCTTCCTA----CCTAGTACTTGATCTCATTTTGTTTTTCCTTCCTTATTCTCAGCTC--TGAGAGTTTTTATGGGTTAGTGGGCATGATTAGGAGACAGGGCAACATGGGCAAGGTTGGAGGAGCATTTGA-----AGGGC-T a score=11931.0 s hg17.chr13_random 175089 85 + 186858 TTAAGTTTGAAGACT------CAGTGTTACAGGTTTTAAAAGGTAGCAGTTCTCAGTATATTCCATTTTTTAAAAAAAATGTAC-AAATATG---------- s panTro1.chr12 22879712 84 - 117159028 TTAAGTTTGATGACT------CAGTGTTACAGGTTTTAAAAGGTAGCAGTTCTCAGTATATTCCATTTTTT-AAAAAAATGTAC-AAATATG---------- s mm5.chr5 125458776 87 - 149219885 TTAGGTTTGAGGACTGTCATCTCCTGTTACGATTTTAAAAGGAGTTCAGTTTCAAGCATACTCACTTCTTT----TAAATGTGT-AAATGTG---------- s rn3.chr4 5160592 87 + 187371129 TTAGGTTTGCGGACTGTCAACTCCTGTTGTGATTTTAAAAAGAGTTCAGTTTCTAGCATGCTCACTTCTTT----TAAATGTGT-AAAAGTG---------- s canFam1.chr16 42433463 60 - 60307850 TTTGATGTGGCAACT----------GTCA------------------GGTCCCCTGACAGTTTTATTTGTT----TTAATGTATAAAATATG---------- s danRer1.chrNA 340172452 91 + 390413307 TTGAAGTAAAAGTTT------TAAACTGATAAATTGCACAACATTGCTGTTTTCTGTATTTTTTTTTACTT----TAAAAACAA-CACTATTGATGAGTATT a score=746.0 s hg17.chr13_random 175174 3 + 186858 GTC s panTro1.chr12 22879796 3 - 117159028 GTC s mm5.chr5 125458863 3 - 149219885 TTT s rn3.chr4 5160679 3 + 187371129 TTT s canFam1.chr16 42433523 3 - 60307850 GTC s danRer1.chrFinished 17878576 3 - 40167097 GTG a score=-3307.0 s hg17.chr13_random 175177 3 + 186858 T------TT s panTro1.chr12 22879799 3 - 117159028 T------TT s mm5.chr5 125458866 4 - 149219885 TG-----TT s rn3.chr4 5160682 9 + 187371129 TGTTTTTTT s canFam1.chr16 42433526 3 - 60307850 T------TT s galGal2.chr2 141532941 3 - 147590765 ------TTT s danRer1.chrFinished 17878579 3 - 40167097 ------TCT a score=159683.0 s hg17.chr13_random 175180 96 + 186858 TTAGATGGATGCATGCAGTTCGTCAGAACTTAAATACTGAGGAAGAAGTGGAAAATGTAGCAGACATTGGTTTTGATTGTAACATGTGC--AGACCCT s panTro1.chr12 22879802 96 - 117159028 TTAGATGGATGCATGCAGTTCGTCAGAACTTAAATACTGAGGAAGAAGTGGAAAATGTAGCAGACATTGGTTTTGATTGTAACGTGTGC--AGACCCT s mm5.chr5 125458870 96 - 149219885 TTAGGTGGATGCATGCAGTTTGTCAAAACTTAAATACTGAGGAGGAAGTGGAAAATGTAGCAGACATTGGTTTTGATTGTAGCATGTGC--AGACCCT s rn3.chr4 5160691 96 + 187371129 TTAGGTGGATGCATGCAGTTTGTCAAAACTTAAATACTGAGGAGGAAGTGGAAAATGTAGCAGACATTGGTTTTGACTGTAGCATGTGC--AGACCCT s canFam1.chr16 42433529 96 - 60307850 TTAGATGGATGCATGCAGTTTGTCAAAACTTAAATACAGAAGAGGAAGTGGAAAATGTAGCAGACATTGGTTTTGATTGTAGCATGTGC--AGACCCT s galGal2.chr2 141532944 96 - 147590765 CTAGATGGATGCATGCAATCTGTCAGAACTTAAACACAGAGGAGGAAGTGGAAAACATAGCTGATATGGGTTTTGACTGTACCATTTGT--AGGCCAT s fr1.chrUn 106168374 96 - 349519338 TCAGGTGGTTCCATGCATCTTGCCAGAGCCTCCACTCGGAGGAAGATGTGGAAAAAGCTGCAGAAAATGGCTTCAACTGCACAATGTGT--CGGACCT s danRer1.chrFinished 17878582 96 - 40167097 GCAGGTGGATGCATGCCTCGTGTCAGGGAATTCACTCAGAGGAGGAGGTGGAGAAGGTTGCAGATACCAGTTTTGATTGCAATCTGTGCCAAGGCC-- a score=30054.0 s hg17.chr13_random 175276 44 + 186858 ATATGCCTGCATCTAATGGTAACAGAATAATTTAAACTGTGAGT s panTro1.chr12 22879898 44 - 117159028 ATATGCCTGCGTCTGATGGTAAGAGAATAATTTAAACTGTGAGT s mm5.chr5 125458966 44 - 149219885 ATATGCCTGTGTCTAATGGTAAGATAGTAACATAAACTGTGAGT s rn3.chr4 5160787 44 + 187371129 ATATGCCTGTGTCAAATGGTAAGAGAGTAACATAGGCCATGAGG s canFam1.chr16 42433625 44 - 60307850 ATATGCCTACGTCAAATGGTAAGAAAACAATGTGAACAGTGGGT s galGal2.chr2 141533040 44 - 147590765 ACATACCACCAACAAACGGTAAGAAGACAATTGAAACCAATGGC s danRer1.chrFinished 17878678 29 - 40167097 ATATTCCCCTCTCACCTGGTAA-----------ACACAGT---- a score=1140.0 s hg17.chr13_random 175320 2 + 186858 CT s panTro1.chr12 22879942 2 - 117159028 CT s mm5.chr5 125459010 2 - 149219885 TT s canFam1.chr16 42433669 2 - 60307850 CT s galGal2.chr2 141533088 2 - 147590765 CT s danRer1.chrFinished 17878707 2 - 40167097 CA a score=2595.0 s hg17.chr13_random 175320 8 + 186858 CTGCACTC s canFam1.chr16 42433669 8 - 60307850 CTGTGCTC s galGal2.chr2 141533088 8 - 147590765 CTGCACAC s danRer1.chrFinished 17878707 8 - 40167097 CAGCACTC a score=3952.0 s hg17.chr13_random 175322 6 + 186858 GCACTC s panTro1.chr12 22879944 6 - 117159028 GCACTC s canFam1.chr16 42433671 6 - 60307850 GTGCTC s galGal2.chr2 141533090 6 - 147590765 GCACAC s danRer1.chrFinished 17878709 6 - 40167097 GCACTC a score=-17.0 s hg17.chr13_random 175328 83 + 186858 TTGTACCA--CTCTCTTGCACCTTACT--GTCCATA----ACCAATGAATTAGCTTAGCTCTACTCTATTTTGTCTTTGTGAAAC--TTACTT------- s panTro1.chr12 22879950 83 - 117159028 TTGTACCA--CTCACTTGCACCTTACT--GTCCATA----ACCAATGAATTAGCTTAGCTCTACTCTATTTTGTCTTTGTGAAAC--TTACTT------- s rn3.chr4 5160831 65 + 187371129 TCATGCTG--CTC---TGCATC--------TCCTTG----ACTTGAGAAATAG---------AAATTGTTTTGTACTTAATATAC--TTCCTA------- s canFam1.chr16 42433677 80 - 60307850 --CTGTAA--CTCACTTGTGCCTTGCT--GTTGATA----ACCAGTGAGTGGGTTTGCCTCT---CTTTTTCTTTTCTGTGAAACCGTTATTT------- s danRer1.chrFinished 17878715 79 - 40167097 --TTACCAACATTGCTTCAGCATCACTGAGTCTGTATTACATTTCTAAAT------------GCACTTTTTTTTGGTTGT-------TTACACAGCACCG a score=91.0 s hg17.chr13_random 175328 1 + 186858 T s galGal2.chr2 141533096 1 - 147590765 T a score=-17492.0 s hg17.chr13_random 175411 87 + 186858 --------TGACAAGTATTTT--------------------ATGAAAAATA-----TTATTGTTGGTT---ATACA------TGACTTATCACAACTTGTTA---TAAAACAATTTAC--ATGAAACAATAAAA s panTro1.chr12 22880033 87 - 117159028 --------TGACAAGTATTTT--------------------ATGAAAAATA-----TTATTATTGGTT---ATACA------TGACTTATCACAACTTGTTA---TAAAACAATTTAC--ATGAAACAATAAAA s mm5.chr5 125459351 116 - 149219885 --------TTATAAATATTTTTAAATTAGATATTCATCAAAATAAAAAAAAAGAAGTTGTTTTGTACTATAATATA------CTTCCTATCCAAACTTTATT---TAAATGGTTGTAT-AATGAAAAAATGAAG s rn3.chr4 5160896 40 + 187371129 ---------TGCAA--ACTTT--------------------ATTAAGATGG-----TTGT-----------AT-----------------------------------------------ATTGAAGAAGTGAG s canFam1.chr16 42433757 99 - 60307850 --------GGACAAGTATTTT--------------------ATGAAAACTA---AGTTATT-TTAGTT---ATAAAGTAACTCTTATTATCCCAACTTAATACATTAAAACCATTTGCTTACGTAAAGAAAATA s danRer1.chrFinished 17878794 82 - 40167097 GGAACACCATCCAAATCTAGT--------------------TTGGA----------TT-TTGCCGATT---CTGT-------TTTCATGCCACAGAGAGTTA---CAAAA------AC--AAGAGATCATGGTA a score=5938.0 s hg17.chr13_random 175498 16 + 186858 AGCATATACTTTAGAT s panTro1.chr12 22880120 16 - 117159028 AGCATATACTTTAGAT s mm5.chr5 125459467 16 - 149219885 CATATGCAAATTAGAT s rn3.chr4 5160936 16 + 187371129 CATATGCAAATTAGAT s canFam1.chr16 42433856 16 - 60307850 AGTACGTATTATAAAT a score=29177.0 s hg17.chr13_random 175514 133 + 186858 GTAAACTATAATTTTGCTTCCAAGGAACATGATCTTGTAGTTATTGACAATATGTC-AAAATCCAATGTGTTGATTCTTTCTTAGCCAGGTTTTCCTCCATGACTTGAGTAT-TTCCTTCATCACTTCTTGTTTT s panTro1.chr12 22880136 133 - 117159028 GTAAACTATAATTTTGCTTCCAAGGAACATGATCTTGTAGTTATTGACAATATGTT-AAAATCCAATGTGTTGATTCTTTCTTAGCCAGGTTTTCCTCCATGACTTGAGTAT-TTCCTTCATCACTTCTTGTTTT s mm5.chr5 125459483 102 - 149219885 GTAAAATATAATTTTGCTCTCAAGGTTTAACCTCTTGGA-TTATTG----TATTTA-GAAATCC------CCCATTCAGTCTCTGCT-GGTTTTCTTC--------------------TCAGTGCTCCTTGTTTT s rn3.chr4 5160952 112 + 187371129 GTAAA--ATAAATTTATTCTCAAGGCTTAACCTCTTGGA-TTATTA----TACCCAGAAAATCC------CCCATTCAGTCTCTGCT-GGTGTTCTTC---------TCTATGCTCCTTGTTTTGTTCTTGTTTT s canFam1.chr16 42434075 120 - 60307850 ATAAAATGTAATTTTGCTTTTGTGACACACAATCTTGTAGTTATTAGCAATATGTA-GAAATCCAGTATGTTGACCC-------------TTTTTCTCTCCATAATATGTAT-TTCCTTTTCTGCTTCTCATTGT a score=0.0 s hg17.chr13_random 175647 7 + 186858 GTTGTTG a score=600.0 s hg17.chr13_random 175647 1 + 186858 G s panTro1.chr12 22880269 1 - 117159028 G s mm5.chr5 125459585 1 - 149219885 G s rn3.chr4 5161064 1 + 187371129 G a score=1425.0 s hg17.chr13_random 175648 6 + 186858 TTGTTG s panTro1.chr12 22880270 6 - 117159028 TTGTTG s mm5.chr5 125459586 6 - 149219885 TTCTTG s rn3.chr4 5161216 3 + 187371129 ---TTA a score=1835.0 s hg17.chr13_random 175654 4 + 186858 CTTT s panTro1.chr12 22880276 4 - 117159028 CTTT s mm5.chr5 125459592 4 - 149219885 TTTT s rn3.chr4 5161219 4 + 187371129 ATTC s canFam1.chr16 42434195 4 - 60307850 TTTT a score=7407.0 s hg17.chr13_random 175658 15 + 186858 AAAAAGTGCTTTTAA s panTro1.chr12 22880280 15 - 117159028 AAAAAGTGCTTTTAA s mm5.chr5 125459757 15 - 149219885 AAATAATGCCTTTGA s rn3.chr4 5161226 15 + 187371129 AAATAATGCCTTTGA s canFam1.chr16 42434199 15 - 60307850 CAAGACAGCCTTTAG a score=25848.0 s hg17.chr13_random 175673 68 + 186858 ----CTTTAGTGTTCAAACATTTATTTTAATAAAATGAGTATAGAAACAGAAATTTTAATCATATATAAGTA-- s panTro1.chr12 22880295 68 - 117159028 ----CTTTAGTGTTCAAACATTTATTTTAATAAAATGAGTATAGAAACAGAAATTTTAATCATATATAAGTA-- s mm5.chr5 125459881 65 - 149219885 ----CTGTTGTATTCATACATTTG-TTGAATGATACATGTACAGCAACTGAAA-ATTAATTCTGTATAAGT--- s rn3.chr4 5161337 66 + 187371129 ----TTATAGTATTCACACACTTG-TTGAATGATATGTGTATAGCCACTGAAATTTTAATCCTGTGCAAGT--- s canFam1.chr16 42434214 74 - 60307850 CTCTATTTAGTGTTTAAGTATTTATTTATTTAAAATGGGTACAGAAATAGAAAATTTAATTCTATGTAAATCCT a score=33364.0 s hg17.chr13_random 175741 80 + 186858 TGTAAAT-ACACTTTACCTTTTCTGAAAAGAATTACCTGGATTTTTTTTTTTTTTCATTTCAGTGCCTTCCTCAGACTGCT s panTro1.chr12 22880363 76 - 117159028 TGTAAAT-ACACTTTACCTTTTCTGAAAAGAATTACCTGGA----TTTTTTTTTTCATTTCAGTGCCTTCCTCAGACTGCT s mm5.chr5 125459946 62 - 149219885 ----------------CTTTTTTTCTCAAACATTTCCTGAT---TGGTTCTTTTTCTGTTCAGTGCCTTCCTCAGACTGCT s rn3.chr4 5161403 62 + 187371129 ----------------CTCTCTTTCTCAGACATTTCCTGAT---TGGTTCTTTTTCTGTTCAGTGCCTTCCTCAGACTGCT s canFam1.chr16 42434288 77 - 60307850 TTTAAAT-ATTCCTTTTTTTTTTTTGAAAAAATTACAGTTT---TTTTTTCCCTCCATTTCAGTGCCTTCCTCAGACTGCT s galGal2.chr2 141539432 73 - 147590765 TTTAAATCAAGTCACACTTTTT-----AAAAGTTGAAATGA---TTTTCCTTATATTTTTCAGTGCCTTCTTTGGACTGTT a score=66517.0 s hg17.chr13_random 175821 71 + 186858 GTGGATCTTCACTTGTAGCACAAATTGTCA-CAAAAGTAAAAAAGCTAGGTAAA-ATTTGAAATG-CTTTACTT s panTro1.chr12 22880439 73 - 117159028 GTGGATCTTCACTTGTAGCACAAATTGTCACCAAAAGTAAAAGAGCTAGTTAAA-ATTTGAAATGCCCTTactt s mm5.chr5 125460008 71 - 149219885 GCGACTCTTCTCTTGTGGCACAGATCGTCA-CAAAAGTGAAAGAGCTAGGTAAA-ATTGGAAATG-TTTTTCTT s rn3.chr4 5161465 72 + 187371129 GCGACTCTTCTCTTGTGGCACAGATCGTCA-CAAAAGTAAAAGAGCTAGGTAAA-ATTGGAAATGACTTTTGAA s canFam1.chr16 42434365 71 - 60307850 GTGAATCTTCACTTGTAGCACAGATTGTCA-CAAAAGTGAAAGAACTAGGTAAA-ATCTGAAATG-GTTTGCTT s galGal2.chr2 141539505 72 - 147590765 GTGATTCATCAGTTGGAGCTCAGATTATTT-CAAAATCAAAAGAACTAGGTAAAGAATGTAAATG-CTTAACCT s danRer1.chr24 4067192 63 + 23152154 GCGAACCTCCAATGGTGGCACAGATTCTAA-CAAAAGTCAAGG--------AAA-ACGGTAGGTG-TTTTGCTC a score=91.0 s hg17.chr13_random 175892 1 + 186858 A s danRer1.chr24 4067255 1 + 23152154 A a score=144251.0 s hg17.chr13_random 175892 646 + 186858 AATTTAA-TTAATTTAC------------TTTGCTTAATT-TTT--ACATAATTGGCTTACCACTTCT-----AAAATCTGCTTCAATCATATGGGTGTTCTATCCAAATTCCATAATGTTGGTAATCATTTCCACAA-TGATATATAAAATGT------CATCCAGCTTTACTG-GGGCAGTATTCCTATAAATTTCAGCAAGTTGGCAATAAAAATAACAGCTC-TTAGAATAACCATTAATGCCATACTTGCTTTGGTTTCA--TTGATATATTACTGTGCTTAATTATCAGTTAGCAG-AAAATACGGCCTAGT----TAGC-AAGCAG-------ATTTCTTTT---------------AGAATTAATTCA-ATCGCttaatttttt----aaaataattaataaGCCTAGTATGGTGATTAATATGATATTCTTATTAAACAGTCATTCTTTTG--AATACTTGTATTTAATAGCACCT--GATACAAAAACATTTGGATAGTACAGGAATTGTTCTAAGGAACAACAGTTTTGTATGTTTA------------------------------AAATT------------AAATCTGCAGGAT-----------------------------------------------------------------------TTGTACTTA------------TTTA------TTACTTCTCCCTGTTAGTAATTATGTTGATACTCTGATTTTTCCAGATGAGCTTCTGGAGTATTCTCTCTCCTCTTGTGTAAATAGATCCCTGCCTTTTGATCTT--------TTCCAGGAAAAAGCTCA-TAGTGGATTAGCTG s panTro1.chr12 22880512 649 - 117159028 aatttaatttaatttac------------tttgcttaatt-ttttaacataattGGCTTACCACTTGT-----AAAATCTGCTTCAATCATATGGGTGTTCTATCCAAATTCCGTAATGTTGGTAATCATTTCCACAA-TGATATATAAAATGT------CTTCCAGCTTTACTG-GGGCAGTATTCCTATAAATTTCAGCAAGTTGGCAACAAAAATAACAGCTC-TTAGAATAACCATTAATGCCATACTTGCTTTGGTTTCA--TTGATATATTACTGTGCTTAATTATCAGTTAGCAG-AAAATACGGCCTAGT----TAGC-AAGCAG-------ATTTCTTTT---------------AGAATTAATTCA-ATCTCttaattttta----aaaataattaataaGCCTAGTATGGTGATTAATATGATATTCTTATTAAACAGTCATTCTTTTG--AATACTTGTATTTAATAGCACCT--GATACAAAAACATTTGGATAGTACAGAAATTGTTCTAAGGAACAACAGTTTTGTACATTTA------------------------------AAATT------------AAATCTGCAGGAT-----------------------------------------------------------------------TTGTACTTA------------TTTA------TTACTTCTCCCTATTAGTAATTATGTTGATACTCTGATTTTTCCAGATGAGCTTCTGGAGTATTCTCTCTTCTCTTGTGTAAATAGATCCCTGCCTTTTGATCTT--------TTCCAGGAAAAAGCTCA-TAGTGGATTAGCTG s mm5.chr5 125460079 657 - 149219885 ----------------------------------TTAATT-CTT--AAACAACTGACTTG------------------ATGCTTAAATTAAAT--------TAAGTGAATTGTCTGATGTTAATA------TCAAGAATTAATATATAAAATGTTCA---TATCCCATTTTGATG-AAGTAGTATTCCTATAAGTTTCAGGAAAT----AATGAAAATAATAGCTCTTTGGATTAACTGTTAGTATCTTGCTTGCCTTCACTTCAGCTGGGTATTGTGCT-TGCTTAGTTGTCAGTAAGGAGAAAAAGAAAGCCTGTT----TAACTAAGCA----------CTCATTT---------------AGTACTAATTAATATTTTACAATTTGT---------TCTCTGATAA-CTTAGAATGATG----ACATGACATT-TTATGATAGATTTATCCTTTAACCAATATTTTT-----ACAATATTT-GGATATAAAAACATTTGGATTATATTGAAATTATTTTAATAAACA--AGTTTT-CACATTAA------------------------------AAGTT--------------ATCTTCAGAATTTATGATCTTATTAGTATTTTAAGCTAGAACACAAAACAGTGTATTAATGGGTTTGAATACATGTATATCATTGTACTTAAGGATGCAGGTTTTTACAGTGTTTAACACTCTTTGTAGGTGGTCAAATTGATACT---GGTTTTCCAAATGGGCTTCTGAAGTATATTCATTTCTCTTATTTA------------CGTTTTGGACTT--------CACTGGGAGAAAGCTTATTATTTGAGTGGCTG s rn3.chr4 5161537 654 + 187371129 AACACAA-----------------------ATATTTAATT-CTT--AAATAACTGACTCA------------------ATGCTTAAATGAAAT--------TAAGTGAATTGTCTGATGTTAGTT------TCAAGAATTAATGAATGATATGTTCATATTATCCCATTTTGATG-AAACAGTATTCCTATAAATTTCCAAAAAT----AATCAGTGTAATAGCTCTTTGGATTAAGTGTTAGTATCATGCTTGCCTTTGCTTCAG-CTGGTATTGTGTT-TGCTTAGTTGTCAGTAAGGAGATAAAGAGAGATTGTTAATGTAAC-AA-------------CCCATTT---------------AGTATTAATTAATATCTTGCAATTTTTT--------TTGTTCATAA-CTTGGAATGGTA----AGATGGCATTTTTATGATAGATTTATCCTTTAACCAGTATTATATTTTGAAAATATTTCTGATAT-AAAACATTTGGATTATATTGAAATTGTTTTTATAAACA--AGTTTT-CACATTAAAGATATTGATAAATATCTTACTAGTATTTTAAGCTAGCATACATCATGGGTTTGAATACA--------------------------------------------------------------TGTACATCATTGTACTTAAGGATGCAGGTTTTTATAGTGTCTGCCACTTTTGGTAGGTGGTCACAGTGATACT---GGTGTTGCAAATGGGCTTCTGAAGTACATTTGTTTCTCTTA----------------AATTTTGGTCTT--------CACTA-GAGAAACCTTATTACGTGAGTGGTTG s canFam1.chr16 42434436 659 - 60307850 GACT----ATTCTTTACAGAAAGCGTGTAAATACTTAATTATTT--ATACAGGTGACTTGCCACATGTTCCACAAAACTTGCCTT-----TATGAGTGTTCAGCCTAAGTTTCCTAATGTTGTAAATCATTTCTATAACTGACATATACGATGTTCATCTTATCCAGCTGTAGTGTGAACACTGTTCTGATAAATCTCAGCAAAATGGTAGTGAA-ATAACCACTG-TTGAAGTACTCACTAACTCCATACTTGCTTTGGTTTCA--TCAATACGTTACTGTGTTTAGTAATCAATTAGCAG-AAAATGAGGCCTGGT----TAAC-AAATAGTGGTTTTGTTTTGTTTGTTTGTTTGTTTTAAAGAATGAATTCA-ATCTTTTACTTTTTTTTTTTCTGTAATGTATCA-GCTAGAGTGGTGACTAATAGGATAATTTTATTAAACTATTGTTCTTTTG--TCTAATTCTAT---ATGATATCA--GATACAAAAACATTTGGATAGTACAGAAATTGTTGTAATGGATAGCAATTTTGTACATTTA------------------------------A----------------AAATTTGCAGGAT-----------------------------------------------------------------------TTCTATTTA------------------------------------------TTATATTAATACTT--GGCTCTCCAAATGGGCTTCTCTAGTATTTTTGTTTTTCTTACATA----AATTCTCACCTTTTAGTCTGAAAAGATACTCCAGGAAAAAACTCA-TAGACAGGTAGCTG a score=8531.0 s hg17.chr13_random 176538 57 + 186858 -AGCATTGCATTTATTTGCAGTGCTT-----CTAACTCTTTTTATTGGGACATGAAAAAAGAA s panTro1.chr12 22881161 57 - 117159028 -AGCATTGCATTTATTTGCAGTGCTT-----CTAACTCTTTTTATTGGGACATGAAAATAGAA s mm5.chr5 125460737 50 - 149219885 -AGCAGCAGCTTTAGCTCCAGGATCT----------TCTTCCCAT--GTTCATGGAAGCCAAG s canFam1.chr16 42435095 63 - 60307850 AAGCATTACTTTTAGCTTCAGTGATTTCTTTCTGAACCCTTATGTTGATACATGAGAAAAACA a score=1184.0 s hg17.chr13_random 176595 5 + 186858 ATGCC s panTro1.chr12 22881218 5 - 117159028 ATGCC s mm5.chr5 125460787 5 - 149219885 ATGCT a score=25849.0 s hg17.chr13_random 176600 298 + 186858 AGGAAGACttttttgagacggagtctcgccc-tgtcgcccaggctggagtgcagtggcacgatcttggctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccgcatagctgggattacaggtgcccgccaccacgcccggctaattttttgtatttttagaagagacagagtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatctgcctgccacctcggcctcccagagtgctgggattacaggcatgagcccccgcacccagct s panTro1.chr12 22881223 299 - 117159028 AGGAAGACttttttgagatggagtcttgcccgtgttgcccaggctggagtgcagtggcacgatctcggctcaccgcaacctccgcctcctgggttcaagcgattcttctgcctcagcctcccgcatagctgggattacaggtgcccgccaccacgccgggctaattttttgtatttttagaagagacagggtttcactgtgtttgccaggatggtctcgatctcctgacctcgtgatctgcctgccgcctcggcctcccagagtgctgggattacaggcatgagcccccgcaacgggcc a score=6710.0 s hg17.chr13_random 176898 39 + 186858 CAGGAAGACCA------TTTTTTAAAAACATGTAACATTTCTGCC s panTro1.chr12 22881522 39 - 117159028 CAGGAAGACCA------TTTTTTAAAAACATGTAACATTTCTGCC s mm5.chr5 125460794 39 - 149219885 CAGTAAACCCACCCC-CTTTTTTGTTAACAT---ACATTCCTG-- s rn3.chr4 5162349 41 + 187371129 CAGAGAGCCCACCCTGTTTCTTTGTTAGCAT---ACATT-CTGCC s canFam1.chr16 42435161 39 - 60307850 CAGGTAGGCCA------TTTTTAATGAAACTTAGGACTTTCTGCT a score=4488.0 s hg17.chr13_random 176937 44 + 186858 CATAATCCAA---GGAAGTTTG---ACCTATTGTTCCTAGTTTTTATTGG s panTro1.chr12 22881561 44 - 117159028 TATAATCCAA---GGAAGTTTG---ACCTGTTGTTCCTAGTTTTTATTGG s mm5.chr5 125460833 38 - 149219885 --TAGTCCTA---AAAAGTT------ATCAGTGTTTTCAG-TGTCACTGA s rn3.chr4 5162390 40 + 187371129 TGTAGTCCTA---AAAAGTT------ATCAGTGTTTTCAT-TGTTACTGA s canFam1.chr16 42435200 44 - 60307850 TACAATCTGA---AGAAGTTCG---GCCAGTATTTCTTAGTTTCAACTGA s danRer1.chrFinished 17881632 47 - 40167097 CCTAATCTAACATGAAAATTAGAGTATTTAATACTGTTAGTTAATGT--- a score=-17.0 s hg17.chr13_random 176981 53 + 186858 GTATCATGAA---GTTAATT--------ATTCATGCATTTCATAGATACATAATTGTTTTCTAG s panTro1.chr12 22881605 53 - 117159028 GTATCATGAA---ATTAATT--------ATTCATGCATTTCATAGATACATAATTACTTTCTAG s mm5.chr5 125460871 41 - 149219885 ACATCTTCA-------------------GTTTGTGCATTTTGTAG----ATAATTGCTGAATAA s rn3.chr4 5162430 41 + 187371129 ACATCTTCA-------------------GTTTGTGCATTTTGTGG----GTAATTGCTGAGTAG s canFam1.chr16 42435244 39 - 60307850 ATACTCTTA--------ATT--------ATTCCTGCATTCCACAG----ATAATTGCTT----- s galGal2.chr2 141540830 42 - 147590765 GCAGTATCA----------T--------ATCTCTCTGTTTTATTT----ATACTGACTTCCTCA s danRer1.chrFinished 17881679 57 - 40167097 ---TAATCAATGCGTTAACTACTGAGAAATAACCGAAATTTCTAT----ATAAATGTTTCTTGC a score=5352.0 s hg17.chr13_random 177034 29 + 186858 AACTACAGTCACATTCCCTTGACATGGGT s panTro1.chr12 22881658 29 - 117159028 AACTACAGTCACATTCCCTTGACATGGGT s mm5.chr5 125460912 29 - 149219885 GTATATAGTTGTATCTTTTTGCCGTGTAG s rn3.chr4 5162471 29 + 187371129 ATCTATAATTGTATCTTTTTGCCATGTAG s canFam1.chr16 42435283 25 - 60307850 ---TATAGTCACATTCTCTTCACAAG-GC s galGal2.chr2 141540872 26 - 147590765 CTCATGAATCAGTTCCAT---ACATGTGA a score=7437.0 s hg17.chr13_random 177063 35 + 186858 ATTTTGGAACAGTAATCA----GTCA----AATT----------TAAAATGAA s panTro1.chr12 22881687 35 - 117159028 ATTTTGGAACAGTAATCA----GTCA----AATT----------TAAAATGAA s mm5.chr5 125460941 42 - 149219885 ATTTTGGAATATTAATCAACTTATCAGT-CAGTT----------TAAAATGAA s rn3.chr4 5162500 42 + 187371129 ATCTTAGAATATTAATAAACTTATCACT-CAGGT----------TAAAATGAA s canFam1.chr16 42435308 43 - 60307850 ATTTTGGAACAGCAGTCAGTTTATCACTGCAAAT----------TAACTTGAG s galGal2.chr2 141540898 53 - 147590765 ATTATTAACTCTTAAAAATTCTGTTCCTAAAGATCTAAGACTTGTAAATTAAA s danRer1.chrFinished 17881783 31 - 40167097 ATTTGTGAAT----AAAATCTTGTCA------------------TGAAAAAAT a score=17820.0 s hg17.chr13_random 177098 47 + 186858 --------AGTTTAAAT--TTGTATTCTTGGG------ATTT-TGTAATTT---TAGACCCACCCAA s panTro1.chr12 22881722 47 - 117159028 --------AGTTTAAAT--TTGTATTCTTGGG------ATTT-TGTAATTT---TAGACCCACCCAA s mm5.chr5 125460983 45 - 149219885 --------AGCTTCAAT--GTGTGTCCTTGGG--------TT-TGTAATCT---TAGACCCCCCTAA s rn3.chr4 5162542 45 + 187371129 --------AGCTTCAGT--GTGTGTCCTTGGG--------TT-TGTAATCT---TAGACCCACCTAA s canFam1.chr16 42435351 49 - 60307850 --------AGTTTTAATACACATATCCTTGGG------ATAT-TGTAATTT---CAGATCCACCCAA s galGal2.chr2 141540951 50 - 147590765 --------GAGTTTTAT--AT-TGCTGTTATG------ATTCATTTAACTTTTATAGACCCACCGAA s fr1.chrUn 106168695 53 - 349519338 --------AACTGACAG--TTATATTCCTGACGATACCACCC-AATATTTC---CAGACCTGTCCAG s danRer1.chrFinished 17881814 57 - 40167097 TCTTCATAGACTTCTTT--TTTTTTGTGTGTG-----TGTCT-TCTACTCC--ACAGACCTGATGAG a score=356353.0 s hg17.chr13_random 177145 205 + 186858 GACTTATACCCAGGATGATGTGTGTTTGATTGAATCAGGGATGACTCAGTTACAGAGCCTCACAGTTACAGTTCCAAGAAGAAAACTGTCAAAACCAAAACTGAAATTGAAGATTATAAATCAGAATAGCGTGGCCGTCCTTCAGACCCCTCCAGACATCCAATCAGAACATTCAAGGGATGGTGATATGGATGATAGTCGAGGT s panTro1.chr12 22881769 205 - 117159028 GACTTATACCCAGGATGGTGTGTGTTTGACTGAATCAGGGATGACTCAGTTACAGAGCCTCACAGTTACAGTTCCAAGAAGAAAACTGTCAAAACCAAAACTGAAATTGAAGATTATAAATCAGAATAGCGTGGCCGTCCTTCAGACCCCTCCAGACATCCAATCAGAACATTCAAGGGATGGTGATATGGATGATAGTCGAGGT s mm5.chr5 125461028 205 - 149219885 GACCTACACCCAGGATGGTGTGTGTCTGACCGAGTCAGGGATGAGTCAGCTACAGAGCCTCACAGTCACAGCTCCCAGGAGAAAACGCACAAAACCAAAACTGAAATTGAAGATTATAAATCAGAATAGTGTGGCTGTCCTTCAGACCCCTCCAGACATCCAGTCAGAACATTCAAGAGATGGTGAAATGGATGATAGTCGAGGT s rn3.chr4 5162587 205 + 187371129 GACCTACACCCAGGACGGTGTGTGTCTGACCGAGTCAGGGATGAGTCAGCTACAGAGCCTCACAGTCACAGCTCCCAGGAGAAAACGCACAAAACCAAAACTGAAATTGAAGATTATAAATCAGAATAGTGTGGCTGTTCTTCAGACCCCTCCAGATATCCAGTCAGAACACTCAAGAGACGGAGAAATGGACGATAGTCGAGGT s canFam1.chr16 42435400 205 - 60307850 GACATACACCCAGGATGGTGTGTGTTTGACTGAATCAGGGATGACTCAGTTACAAAGCCTCACAGTCACAGTTCCACGAAGAAAACGGTCAAAACCAAAGTTGAAGTTGAAGATTATAAATCAGAATAGCGTGGCTGTCCTTCAGACTCCTCCAGACATCCAGTCAGAACATTCAAGGGATGGAGAAATGGATGATAGTCGAGGT s galGal2.chr2 141541001 205 - 147590765 GACATATACACAGGATGGAGTCTGCTTGACAGAATCCGGCATGTCTCAGTTACAGAGCCTAACTGTCACAGTACCTAGAAGAAAACGGACGAAACCAAAGCTTAAATTGAAGATTATAAATCAGAACAGTGTGGCTGTGCTTCAGACACCCCCAGATGCCCAGTCAGAACACTCAAGAGATGGCGAGATGGATGACAGTAGAGGT s fr1.chrUn 106168748 205 - 349519338 GACTTACACCCAAGATGGCGTCTGCCTGACCGAGTCCGGCCTTTGCCAGCTGCAGAGCCTCTCTGCTACAGCGTCACGCCGCAGGAAACCCAAACCAAAGCTGAAGCTGAAGATCATCAACCAGAACAGCGTGGCGGTGCTTCAGGCCCCACTCGATCCCCCCTCAGAGCATTCTCGTGATGAAGACATGGAGGACAACAGAGGT s danRer1.chr24 4067385 205 + 23152154 GACGTACACTCAGGATGGCGTGTGTCTGACTGAGTCGGGATTGTGTCAGCTCCAGAGTTTATCTGTCCAGACCACCCGCCGCAAGCGACCCAAACCCAAACTTAAGCTGAAGATCATCAATCAGAACAGCGTGGCAGTGCTGCAGACGCCTCCTGACGCCCAGTCGGAGCTCTTCAGAGATGGAGACCTGGATGACAGTAGAGGT a score=1997.0 s hg17.chr13_random 177350 3 + 186858 AAT s panTro1.chr12 22881974 3 - 117159028 AAT s mm5.chr5 125461233 3 - 149219885 AAT s rn3.chr4 5162792 3 + 187371129 AAA s canFam1.chr16 42435605 3 - 60307850 AAT s galGal2.chr2 141541206 3 - 147590765 AGC s fr1.chrUn 106168953 3 - 349519338 ACT a score=7697.0 s hg17.chr13_random 177353 15 + 186858 ACTAATTTATTTTCC s panTro1.chr12 22881977 15 - 117159028 ACTAATTTATTTTCC s mm5.chr5 125461236 14 - 149219885 GCTCATTAATTTTC- s rn3.chr4 5162795 15 + 187371129 GCTTCTTAATTTTCC s canFam1.chr16 42435608 15 - 60307850 ACTGATTTATTTTCC s galGal2.chr2 141541209 15 - 147590765 AATGTTCTTTTTGCC a score=50413.0 s hg17.chr13_random 177368 470 + 186858 ATGAAAT---TA-GTGCAAGAATTACAGCATATAAAGTAACTTTTGA-AATATGTGTATGATTTACCAAAGGGTAAATCACACTGACTTAGATAACCCCGATGTGACCCTTGCCATCTCCAAATGAGTGATCTTCTTAGACCTTGCCTT--TTCGGGTTCTCTTCCTTTCACACAT--TTTAGAACAGACCTACC--------TTACAGAAATCTCAAGGAGCACCATATCTTTGAAGATCACAGGTGGGGAACTACAGAGGGCTTGACTTTAGTTTGCTAGATAATGACACAAACCTTCTCAGATACTGTGAGCTTGGATAATACCATGTTTAAGTTAAGGTAG---TTGATGCATACATTCTAGAAATGGAAAAGCTGTCATTTAATATTACTTCAGGTATAACTTCATATTCACCAGTGTGCATCATAAA-GTATTGGTTTAAAAACATTTTC-TTAATCAAAGTAAATAT---AAGG-TTTTTCCAGCTGAA s panTro1.chr12 22881992 473 - 117159028 GTGAAATATGT--GTGCAAGAATTACAGCATATAAAGTAACTTTTGA-AATATGTGTATGATTTACCAAAGGGTAAATCACACTGACTTAGATAACCCCGATACGACCCTTGCCATCTCCAAATGAGTGATCTTCTTAGACCTTGCCTT--TTCGGGTTCTCTTCCTTTCACACAT--TTTAGAACAGACCTACC--------TTACAGAAATCTCAAGGAGCATCATATCTTTGAAGATCACAGGTGGGGAAATACAGCGGGCTTGACTTTAGTTTGCTAGATAACGACACAAACCTTCTCAGATACTGTGAGCTTGGATAATACCATGTTTAAGTTAAGGTAG---TTGAGGCATACATTCTAGAAATGGAAAAGCTGTCATTTAATATTACTTCAGGTATAACTTCATATTCACCAGTGTGCATCATAAA-GTATTGGTTTATAAACATTTTC-TTAATCAAAGTAAATAT---AAGGTTTTTTCTAGCGGAA s mm5.chr5 125461250 237 - 149219885 ----------T------------------------------------------------------------------------------------------TGGGACACTTCCTCTC------TGAGTG---TTCTTAGA-----------TTTGTGTATGCATATTTTCTCATAT------GGAATGACTTG----------TGATTGAAATCTCTAAGAGCAGTATGATTGTGTAGCTTATAAGGTAGGTCATTCAGAGCGATTCTTTTCAGTTTGCTGATT------------------------TGTCAGC---------------------------------------------------------ATAAGCCATCCTCTAA-----------------------------------ACTTTGTAAA-CTGTTGATTTATAAACATTTTCTTTGATCGGAATAGA-AT---AGG--TTTTTCTATCTGAA s rn3.chr4 5162810 316 + 187371129 TTGGACA---CACATGCAAGGGT--CAGTGTATGAGATAACTCCTGGTGGCACATGTTTGTT------AAGGGTTTGTCACACTGCTTACAGTAGCTGCTGTGGGATACTT---------------------CTCTGAAA-CATGCCTTAGATTGGGT--GCATGTTTCCTTGTAT-----GGGATCACTTTG----------TCTTTGAAGTCTCTAAGAGCATTATGTTTCTGAAGCTTATGAGAAAGGTCATTCAGAGCGATTTAC------TTGCTTATT----------------------------------------------TTTCAGC-----------------------------------ATAAGCCCTCCTCTAA-----------------------------------ACTTTGTAAA-TTGGTAATTTATAAATATTTTC-TTGATCAGAACAGA-AT---AGA--CTTTTCTATCTGAA s canFam1.chr16 42435623 466 - 60307850 ATTGAATATGT--TCACAAGAATTAAAGCATATAAAATAGCTTTGGA----ATACATATGTTTTATCTCAGGGCAAATTCTACTAACTTGGGTAACCCTTGATAAAACCATGGCCTTTCTAGGTGAGTTGTCTTCTTGGA------TTT--TTTGGATTCTCTTCCTTTCACATAGTCTCTAGAACAGACTTATTAATTAATATTATAGAAACTTCCAGGAACACCATATCTTTGAGGATAATGGATGGGAAGGTTCAGAGGGCTTCACTTTAGTTTGCTAGGTGGCAGCATGAAC---CTCAGGTGCTATAAGCTCAG---CTTCCATGGTTCTGTTAGATTAGAACTTGATCCATGCATTCCTACATG--GAAAACCATTATTAAT-----GTTCAAGTGCAAATTTATGTTCACAGGTGTTCATCATAAACTTAGCTGTTTGTACATATTTTC-TTGAACCCAGGAGATATCCAAGG--ATTTTTTAGCTGAA a score=91.0 s hg17.chr13_random 177838 1 + 186858 t s canFam1.chr16 42436089 1 - 60307850 T a score=25794.0 s hg17.chr13_random 177838 287 + 186858 ttcttttttttttttttttttttttggttgggagacagggtcttgctctgttgcccaggttagagtgcagtggcatgatcttggcttactacaacctctgcctactgggttcatgcgaccctcctacctcagcctcctgagtagctgggaccatggatgtgggccaccacgcctggctaatttttgtatttttttgtagagatggggttttgccattttgccaagactggtcttgaactcctgggctcaagccatctgctctgctcagcctgctgaattcttgagat- s panTro1.chr12 22882465 282 - 117159028 ttc------ttttttttttttttttggttgggagacagggtcttgctctgttgcccaggttagagtgcagtggcatgatcttggcttactacaacctctgcctactgggttcatgcgaccctcctacctcagcctcctgagtagctgggaccatggatgtgggccaccacgcctggctaatttttgtatttttttgtagagatggggttttgccattttgccaagactggtcttgaactcctgggctcaagccatctgctctgctcagcctgctgaattcttgagatA a score=91.0 s hg17.chr13_random 177838 1 + 186858 t s rn3.chr4 5163135 1 + 187371129 T a score=50100.0 s hg17.chr13_random 178125 142 + 186858 AGCAAAATATTTTAATAGTAACCTAAAATCCAATATGAGTTA-----------------AAGAGGATTACTGTAGGTTTGCTCATTTTTGGGGCGGTTATTTATTTTCAACTGATTCAGAAATGAAGCGATAATTATTTCTGTTCCATTACATTTTATT s panTro1.chr12 22882747 142 - 117159028 AGCAAAATATTTTAATAGTAACCTAAAATCCAATATGAATTA-----------------AAGAGGATTACTGTAGGTTTCCTCATTTTTGGGGCAGTTATTTATTTTCAACTGATTCAGAAGTGAAGTGATAATTATTTCTGTTCCATTACATTTTATT s mm5.chr5 125461497 144 - 149219885 AACAAAGAGTTTTAATAGCAACATTAAATATAACACAATTTA------TGTTTATTTCCAAGATGACTACATTTGGTGTGTTTATTTTGGAG-----TGATTATTTTCATTTTACTCAGAAATAAAGCCATAATCATTTTTA----ATCATGTTTTATC s rn3.chr4 5163136 146 + 187371129 AACCAAGAATTTTAATAGCAACATTAAATATAACACAAATTA--TCTTTGTTTATTTCCAAGATAATTACATTTAGTGTTTTTATGTTGGAG-----TGATTATTTTCATTTGACTGAGAAATAAAACCATAATCATTT---TCCAATTGTATTTT--- s canFam1.chr16 42436100 149 - 60307850 ACAAAACTACTTTAGTAGTA---TAAAATTCAATATGAGTTCTATTTTTGCTTATCTCT--GAAGATCACTACAAGCTTGTTTCTTTTAGGT-----TGATTATTTTCAGCTGACTCAAAAATAAAGTAGTGAATACTTTTGTTCCATCACATTGTGtt a score=145.0 s hg17.chr13_random 178267 2 + 186858 TC s panTro1.chr12 22882889 2 - 117159028 TC s mm5.chr5 125461641 2 - 149219885 AC a score=-2152.0 s hg17.chr13_random 178269 5 + 186858 ---ATAG-----------------t s panTro1.chr12 22882891 22 - 117159028 ---ATAGTTGttttttttttttttt s rn3.chr4 5163282 5 + 187371129 ATCAT-------------------- a score=11858.0 s hg17.chr13_random 178274 128 + 186858 ttttttttttaaggggcagtgtcttgttacattgcccaggctggtttccaattcctgggctcaagtgatcctcctgcctcagcctctcaagtagcaggtactataggcatgcgccactgcagccggcT s panTro1.chr12 22882913 128 - 117159028 ttttttttttaaggggcagtgtcttgttacattgcccaggctggtttccaactcctgggctcaagtgatcctcctgcctcagcctctcaagtagcaggtattataggcatgcaccactgcagccggcT a score=91.0 s hg17.chr13_random 178401 1 + 186858 T s rn3.chr4 5163287 1 + 187371129 T a score=687.0 s hg17.chr13_random 178402 3 + 186858 TTG s panTro1.chr12 22883041 3 - 117159028 TTT s mm5.chr5 125461643 3 - 149219885 TTG s rn3.chr4 5163288 2 + 187371129 -TG a score=21418.0 s hg17.chr13_random 178405 73 + 186858 AGA--caatagaattaattgaatacctactgtatgtcagatgttggaaatcatatcagtgtacaaa-gcaggtaga s panTro1.chr12 22883044 74 - 117159028 AGA--caatagaatttattgaatacctactgtatgtcagatgttggaagtcatatcagtgtacaaatgcaggtaga s mm5.chr5 125461646 58 - 149219885 GG-------GGTATTTATTAAATGAATATTATATGACAAA-ATTTGAAGTCTTATCAGTAGACTAA---------- s rn3.chr4 5163290 67 + 187371129 GA-------GGTATTTATTAAATGCATACTGTATGACAAA-ATTTGAACTCTTATCAGTAGACAAA-CTAGATAAA s canFam1.chr16 42436249 73 - 60307850 --attcaccagtatttatcgaatgcctaccttgtgtgggatgttggaaattatgtcagtgaacgaa-gcagatgga a score=4612.0 s hg17.chr13_random 178478 31 + 186858 attctctg--catagagt-ttatattttaatgtt s panTro1.chr12 22883118 33 - 117159028 attctctga-catagagtcttatattttaatgtt s mm5.chr5 125461704 26 - 149219885 -----CTA--CATAAATC-TTGAATCTTTTTGTT s canFam1.chr16 42436322 33 - 60307850 attctccactcatgtaac-ttattctttaatgtt a score=7582.0 s hg17.chr13_random 178509 80 + 186858 --------aggtaacc-------caacttttaaaaaaaat----------cagttaa-----ttataatgtgtttggcaaggcccatggtaaatataaagtttgataaag s panTro1.chr12 22883151 80 - 117159028 --------aggtaact-------caactcttaaaaaaaat----------cagttaa-----ttataatgtgtttggcaagttccatggtaaaaataaagtttgataaag s canFam1.chr16 42436355 110 - 60307850 aggagaaaagattactactactactactactaataataataataataacatagtaaaggaattgattatgtgtgtgacaaatgccgtagcaaaacttgcattggagtaag a score=27022.0 s hg17.chr13_random 178589 305 + 186858 aggaattgcctggccaggcacagtggctcatgcctgtaatctcagcactttgggaggccaaggtaggtagatcacttgaggtcaggagttcgagaccagactggccaacatggtgaaacccgttctctgctaaaaatacaaaaattagccgggctcagtggcatgcacctgtaatcccagctacttgggaggccaaggcaggagaattgcttgaacctgggaggtggaggttagagtgagccgagattgcaccactgcactccagcgtgggtgacagagaaagactctgtctcc-------aaaaaaaaaaa s panTro1.chr12 22883231 312 - 117159028 aggaattgcctggccaggcacagtggcttatgcctgtaatctcagcactttgggaggccgaggtaggtagatcacttgaggtcaggagttcgagaccagactggccaacatggtgaaacccgttctctgctaaaaatacaaaaattagccgggctcagtggcatgcacctctaatcccagctacttgggaggccaaggcaggagaattgcttgaacctgggaggcggaggttacagtgagccgagattgcaccaccgcactccagcgtgggtaacagagcaagactccatctccaaaaaaaaaaaaaaaaaa a score=67650.0 s hg17.chr13_random 178894 473 + 186858 ggaattggaagtacagatgg-gtgtttagggtccatat---------------------gcacagattttaaagag--------gtgagtgagtgagccacttgattacctgagagaagagcatcccagacagtgaggaagccagtgtaaaggctctgggtgagagtgtgctgagcatgtttgaagagtgttgtggagaccaa-------cagagtgagcagaggggacagtcagaaggtgagaagattagagatgtgag-gacaagaaggacggctcagtatatctcacacaaccataaggtggtgtgtcagtag-tttgtgcttaatagcaatggaatgagaggccattgaatgttcctgaaaagaagaacaccatgatcttatttatattttaagaggaacactctcctatgatataagtagatgattaggtgcaagagttatgacaggtagatcagtgagaaa------taatggt--ccaggtgagaggtaatagtggctttgaaaaggTATGTC s panTro1.chr12 22883543 493 - 117159028 ggaattggaagtacagacag-gtgtttagggtccatatgaacagaaagcag-tatttgagcacagattttaaagag--------gtgagtgagtgagccacttgattacctgagagaagagcaccccagacagtgaggaagccagtgtaaaggctctgggtgagagtgtgctgagcatgtttgaagagtgttgtggagaccaa-------cagagtgagcagaggggacagtcagaaggtgagaagattagagatgtgag-gacaagaaggacggctcagtatatctcacacaaccataaggtgatgtgtcagtag-tttgtgcttaatagcaatggaatgggaggccattgaatgtccctgaaaagaagaacaccatgatcttatttatattttaagaggaacactctcctatgatataagtagatgattaggtgcaagagttatgacaggcagatcagtgagaaa------caatggt--ccaggtgagaggtaattgtggctttgaAAAGGTATGTG s canFam1.chr16 42436466 504 - 60307850 ggaattggcagtgcgtatggtgaagtgaggcatcaaatgaaccaaaagc-agtatttgagtgcagacttgaaagaggtgagtgagtgagtgagtgagccacttggtcatctgagggcagaacatcctagatagcaagaaagccattgcacaggctgtgggtagctgtgtgcccattgtgtttgagaaatgtcatgaatatcagggtatcccgcagtgaacgatggtgacagt----aggtgatgagatcacaggtttgagagaccagctg--tgacctagtaggtcacatagaaccataagatgatgcttaaggggttttaagtttcctttggatggattgggaggtaattggaggtttctg---agaatagtagcttaatcttattcattttataagaggcacactcagctgtaatgtgactagac--tttgccccaggagttgtggcacatgggtcagatagggactgttgcagtagtagctggatgagaga----ggtggttctggttaagagtggC a score=30302.0 s hg17.chr13_random 179367 325 + 186858 TTTTGTggccgggcttggtggctcatgcctgtaatcccagcactttgggaggccaaggtgggtggatcacctgaggtcaggagatgaagaccatcctggccaacatggtgaaacctcgtctttactaaaaatacaaaaattagctgggcgtggtggcaggcacctgtaatcccagctatttgggaggcagaggcagaggattgcttgaacccaggaggcagaggttgcagtgagccaagatcgagccactgcactccagcctggtgacagagtgagactccatctcaaaaaataaataaatacatgaaaaaaTATGTCTTTTGTA s panTro1.chr12 22884036 325 - 117159028 TTTTGTggccgggctcggtggctcatgcctgtaatcccagcactttgggaggccaaggcgggtggatcacctgaggtcaggagatcaagaccatcctggccaacatggtgaaacctcgtctttactaaaaatacaaaaattagctgggcgtggtggcaggcacctgtaatcccagctatttgggaggcagaggcagaggattgcttgaacccaggaggcagaggttgcagtgagccaagatcgagccactgcactccagcctggtgacagagtgagactccatctcaaaaaataaataaaTACATGAAAAGGTATGTCTTTTGTA a score=59807.0 s hg17.chr13_random 179692 373 + 186858 TGTTCTTGATAATTTTTGTTTTGTAGTGTGT-TTTGGGTCTATGTTGCTGGGAGAAACACTTTCTGATGCTTTTATGTAACTGATTTTCAGATACAGTTGAACAGGTAATTTGA---------TTTGGGGGCTTGGAGTTTGCAAAGAAGTAGTCCATATA-CTTGGAGGAATTGATCAGATCAGCATTAAC------------AAGAATTTCCACTTCTGAGGATGTTAAAAAATGTCTGAAAAAGGTTTCCATAGTCTCTTAAATTTGGGAAGTGCTTCATTTCACAAAATATGAAAGGTTTCTTGATAATAGTACACATT-GTTTCCCAAATTATGTGATTATAATACCTTTTAAA-------------AACAACACAGAAGACCTTGGAAGGTTTTCCTTGTGACT s panTro1.chr12 22884361 373 - 117159028 TGTTCTTGATAATTTTTGTTTTGTAGTATGT-TTTGGGTCTATGTTGCTGGGAGAGACACTTTCTGATGCTTGTATGTAACTGATTTTCAGATACAGTTGAACAGGTAATTTGA---------TTTGGGGGCTTGGAGTTTGCAAAGAAGTAGTCCATGTA-CTTGGAGGAATTGATCAGATCAGCATTAAC------------AAGAATTTCCATTTCTGAGGATGTTAAAAAATGTCTGAAAAAGGTTTCCATAGTCTCTTAAATTTGGGAAGTGCTCCATTTCACAAAATATGAAAGGTTTCTTGATAATAGTACACATT-GTTTCCCAAATTATGTGATTATAATACCTTTTAAA-------------AACAACACAGAAGATCTTGGAAGGTTTTCCTTGTGACT s canFam1.chr16 42436982 398 - 60307850 TAGTCCTCACATTTCTTTCACAGAGGTATGTGTTTGAGTCTATGTGGTTGGGAGAAAAAC--TCTGGTTCTCATGTATAACTGATGTTCAAATACTGTTAAACAGAAAGTTTGATTTTAAAGTTTTAGTGATTTGAGGCTTGTGAAGAAACCATCTGTGTATCTGGGAGGAATTGAGCAAATTATCATTAACCAGAGTACAGTGAAGAGTTCTAGTTTCTAAGGACAGT---AGATGTCTGAAAAA---TCCCATATATACGTAAATCTGGGGAATGCTGCATTTCACAAAATTTGAAACATTTC---ATTACAGTACAGATTAATTTCCAAAGTAATGAGATTATAGAACCTTTGAAAAACATGGCAAAACAACAACA-AAAAGGCTTGAGAAGATTTTCCCTTTGACT a score=110957.0 s hg17.chr13_random 180065 1237 + 186858 TACCACTTGTAAACACTGAGAAATGGTGATATGTTTCAATTTCATATTTTCTCATTGACTCGTATCAGGGTAAAAGAAAATCAGTTGAAAAATTACCCTTGCTTTTTTAAAATTTACGTGATAAAATAGCCCATCTGAATTTACTGAATTTGTCCTTATTTTTATTGAATATGAAAAAAGATTGTTTAGTGTGTTGGATGTTAAATGCTAAGACAATTTTAGAATTTAAGGAATTGAATATACTGTAT--------------CCTCATGTTCATTTGCATGCCAGGATCTCACATCCTTTGCAGAAGGAAAGGTACATTCCTAGGGATAAAATAAATGCATGTTTCTTGGACAACATTTTTGCTTTCTGTTTGCTAAATAAAAATCCTTTTTAAAAATTTAGTATTGCCACACTTTGCCATATTAAAAATGTTTTAGATTACTATATTATCCTGAAACTACATGGACACACACACCCCTAAAATAAGTTTTATGGTTTTTCATATGCCTGTACGGGAGAAAAAATAGGAAAAGAATACAATCATCATAAGTTCTTATTATTACATTATGCTGAGATTTCTAATAATGCTGCCATTTTCTGGGTATTTTGTATTAAACCTAAAATTTGTGATGTTTTAGACTGTTTCACTAACATGTTTTGATAACGTCTCAGTACCCTTGGGAAAGCATTATAAAGTAGTGGGCAACGATGAAacctactctggatgtttttaggcaaattttttaacttctctgatgttagtgttctcatttataaaataggtgaaccaggatgagcccataggatagttgtgctgatgaggtgcaaggatgcatgccaggcacccagcactggctcttcccagacatggagtgctcagtaaccgtgagctATTAGAATACAAGTGCCCAACCAGTGCTTGAGCAATTGTGTTCTGTGTCCAACAGAACTCAACAAAATCCCACGTTTGTCTTTATATGTGAATTCAGTTCCTTTTGAGACAGTAAGAAATTATGCCTGTGTTGGGGTAACTGAACTTTCAGGAGGAGGGAATTGTCTGCCACAATTATTCTCTGAACTTAATGTTTCCATGTCTTTTTCTTCATTTTGGAAGTTGTGGAAAAATTATAATGAAAGAGTATATAAACGTTTTCCTCTGTATTATAGCATCTCTGACAGTTTCCTTTATTAAAAAGTATGTTACATTAGGGAGAGACTTGATGAATTTAAAATTAAAGTTTGAAAAGTGTT s panTro1.chr12 22884734 1251 - 117159028 TACCACTTGTAAACACTGAGAAATGGTGATATGTTTCAATTTCATATTTTCTCATTGACTCGTATCACGGTAAAAGAAAATCAGTTGAAAAATTACCCTTGCTTTTTTAAAATTTACGTGATAAAATAGCCCATCTGAATTTACTGAATTTGTCCTTATTTTTATTGAATATGAAAAAAGATTGTTTAGTGTGTTAGATGTTAAATGCTAAGACAATTTTAGAATTTAAGGTATTGAATATACAGTATTTTCATGACTAGTCCCTCATGTTCATTTACATGCCAGGATCTCACATCCTTTGCAGAAGGAAAGGTACATTCCTAGGGATAAAATAAATTCATGTTACTTGGACAACATTTTTGCTTTCTGTTTGCTAAATAAAAATCCTTTTTAAAAATTTAGTATTGCCACACTTTGCCATATTAAAAATGTTTTAGATTACTATATTATCCTGAAACTACATGTACACACACACCACTAAAATAAGTTTTATGGTATTTCATATGCCTGTACGGGAGAAAAAATAGGAAAAGAATACAATCATCATAAGTTCTTATTATTACATTATGCTGAGATTTCTAATAACGCTGCCCTTTTCTGGGTATTTTGTATTAAACCTAAAATTTGTGATGTTTTAGACTGTTTCACTAACATGTTTTGATAACGTCTCAGTACCCTTGGGAAAGCATTATAAAGTAGTGGGCAACGATGAAacctactctggatgtttttaggcaaattttttaacttctctgatgctagtgttctcttttataaaataggtgaaccaggatgagcccataggatagttgtgctgatgaggtgcaaggatgcatgccaggcacccagcactggctcttcccagacatggagtgctcagtaaTCGTGAGCTATTAGAATACAGGTGCCCAACCAGTGCTTGAGCAATTGTGTTCTGTGTCCAACAGAACTCAACAGAATCCCACGTTTGTCTTTATATGTGAATTCAGTTCCTTTTGAGTTAGTAAGAAATTTTGCCTGTGTTGGGGTAATTGAACTTTCAGGAGGAGGGAATTGTCTGCCACAATTATTCTCTGAACTTAATGTTTCCATGTCTTTTTCTTCATTTTGGAAGTTGTGGAAAAATTATAATGAAAGAGTATATAAACGTTTTCCTCTGTATTATAGCGTATCTGACAGTTTCCTTTATTAAAAAGTACGATACATTAGGGAGAGACTTAATGAATTTAAAATTAAAGTTTGAAAAGTGTT a score=1401.0 s hg17.chr13_random 181302 15 + 186858 ATTGACTATAAGTGA s panTro1.chr6_random 15571484 15 + 67355074 ATTGACTATAAGTGA a score=66042.0 s hg17.chr13_random 181317 514 + 186858 TCTTCAGCTGTGCAGTTTTCAACTTGAGGTTGTCAGA-----------------------ATGTAATATTACACATTATATTACACACA------------------------TCTACAGAATCCAAA-----TTGTGATGTTCCTGGAGTATTGGAACAATACCTATGACTTTTTGTTTCTATTGATTTTTAACTCTTCTAATAACCACTTCTTTAAGAA---AAGTCATACATTATCACTTTGGTGTATCAGAAACAAATTCCTTACGCAATAAAAGCATACTTCTTTCTCATTCACCTA--------CTGGGATCTAGAAACCCTGTTAATGCAAGAAAAAAATCCCAAACCTCAATAAAAT---AACACTCTGTTTGTCTGAAGTGTGGAAACACAACACATTTCCTC----TCAACTGGTGGTCGCAGATCGACCATCACAGTGTATGGATGTGTTTGGAGGTGTAGGAATAGGACTGCACTGAGGCTCTAGAAGGCCAGCAGGTGGGGCAGACTGAATGGAGGGAGGGGACTGGCATTCAGTAACTACTGGAGCGTGGGAAGAGTGAGGTAGACTGTC s panTro1.chr6_random 15571499 514 + 67355074 TCTTCAGCTGTGCAGTTTTCAACTTGAGGTTGTCAGA-----------------------ATGTAATATTACACATTGTATTACACACA------------------------TCTACAGAATTCAAA-----CTGTGATGTTCCTGGAGTATTGGAACAATACCTATGACTTTTTGTTTCTATTTATTTTTAACTCTTCTAATAACCGCTTCCTTAAGAA---AAGTCATACATCATCACTTTGGTGTATCAGAAACAAATTCCTTATGCAATAAAAGCATACTTCTTTCTCATTCACCTC--------CTGGGATCTAGAAACCCTGTTAATGCAAGAAAAAAATCCCATACCTCAATAAAAT---AACACTCTGTTTGTCTCAAGAGTGGAAACACAACCCAT----TCCGAATCAACTGGTGGTCCCAGATCGACCATCACAGTGTATGGATGTGTTGGGAGGTGTGGGAATAGGACTGCACTGAGGCTCTAGAAGGCCAGCAGGTGGGGCAGACTGAATGGAAGGAGGGGACTGGCATTCATTAACTACTGGAGAGTGGGAAGAGTGAGGTAGACTGTC s canFam1.chr16 42437420 526 - 60307850 TCTTCAACTGGGCAGTTTCCAAGTTGAGGTGATCTGAAAGTGCTTCCCCATAAAAGAAAGAAGTAATGTTATACATGATATTATATGTAAATAGGTCCTAGATTCCACAGGAGTCTACAAAGGCCAAATGAACTTCGGATACTCCTGAAATATTGTAACAATGTCCTT---TTGTTGTTGCT-TTTGCCATTGACTCTTTGGATAAATGTTTCTTCAGGAAAATAAGTCATAAAGAGCCATGTTAGCATATTAGAAACAAATTCTTTGTGCCACAGAAGCAGGCTT-TTTCTAATTCACTTAACTAGGATCTGGGATCTGGAAACCTTATTAGTACAA-AATAAAATCCAAAATGTAGAGCAAACAGAAATGCTGTGTGTGTCTC--GAGTGGGAACATGGTGCTT----CC----CCCTCTAGT--------------------------TGGATGCCT--GGACCTGTGGGCCTACAGTTGCATTTAGGCTCTAGCAGGCAAGGGGTGGGGGTAGATAGAGTGGAGCCA--GGAATGACATTAAATA-----------GTGGGAGGAGAGA-GCAAGCAGCC a score=0.0 s hg17.chr13_random 181831 10 + 186858 CATCTGGTGA a score=764.0 s hg17.chr13_random 181831 8 + 186858 CATCTGGT s panTro1.chr6_random 15572013 8 + 67355074 CATCTGGT a score=191.0 s hg17.chr13_random 181839 2 + 186858 GA s panTro1.chr12_random 32463711 2 + 38776634 GA a score=20411.0 s hg17.chr13_random 181841 154 + 186858 AGGTGGCTGCTTCCTTGAGGTTTGTTACTTTCTGTAATGTTAATTCCCTCAACTTTTAAAATTTGATTTTTAGACAAGTTATACATTCAAATGATTTAAAATTGGAAAATAATAAAAAGGTAAACAGTGAAGTCTCTCCCTTTC-CCCTGCCTTC s panTro1.chr12_random 32463713 154 + 38776634 AGGTGGCTGCTTCCTTGAGGTTTGTTACTTTCTGTAATGTTAATTCTCTCAACTTTTAAAATTTGATTTTTAGACAAGTTATACATTCAAATGATTTAAAATTGGAAAATAATAAAAAGGTAAACAGTGAAGTCTCTCCCTTTC-CCCTGCCTTC s canFam1.chr16 42437946 130 - 60307850 AGGAGGATAGGTTATTAAGGCCTGTGACGT----TAGCACTAATTCTCTCAAGTTCTTAAAT-------------------TATGTTCACGTGGTATAAAACTGAAAAAGAAT--AAGGGTAAGTCATGAAAAGTGCCACTTTCTCCCTGTCCTC a score=17233.0 s hg17.chr13_random 181995 180 + 186858 ATGCCCCCAGTTTACATCTCCAGA-------AACCTCAGAGGTTTTTCGTGTAACCTTCCAGatgtattttatgcatgtacaaggaaatgtgtgtgtatatatatatatattttgtgtgtgtgtgtatatatatat-TTTGTTCCTTT----TGTCTTACTACTTTTTACTGTCcttcatttttttatggct s panTro1.chr12_random 32463867 176 + 38776634 ATGCCCCCAGTTTGCATCTCCAGA-------AACCTCAGAGGTTTCTCGTGTAACTTTCCAGATGTGTTTTATGCATGTACAAGGAAATGTGTGTTtatatatatatatatagtgtgtgtgtgtgtatatatatat-TTTGTTCCTTT----TGTCTTACTACTTTTTACTGTCC----TTtttttatggct s canFam1.chr1 28702577 188 - 124897793 AGCCATCTAGTTTAGCTCCTCAGATGCAATCACCATTACTAGTTTCTCA-AAAAGTTTTCAAAGACAGTCCATACTGAGTCAGGTGTATATGAATATGAAGATGTATACATAAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAGATGTGCAGTggtagcatactatac---actcttctatgcct a score=6765.0 s hg17.chr13_random 182175 82 + 186858 gcaaatattcctttgtatggaaatataagcaatttaatttacctgttctttcccctgttgatagacctttgggtttctttca s panTro1.chr12_random 32464043 81 + 38776634 gcaaatattcctttgtatggaaatataagcaatttaatttacctgttctttcccctggtgatagaccttttgg-ttctttcA a score=419.0 s hg17.chr13_random 182852 8 + 186858 ttcagcaa s canFam1.chr1 28703517 8 - 124897793 ttaagcga a score=36156.0 s hg17.chr13_random 182860 328 + 186858 attttc---agtacacaatattattaactatggttctcatgctgtgtat-----taatttgat-------------ctctaga----attattcatct---------------------tacct-aactgcagatttgtaccctctgacccacttctgcccatcctacccatcccctacctccagacccttgataaccaccattctac--tctctatacattcagtttct-----caccccgctgcctcccattctgcttcttaagtgagatcatacagtattt----ttctgtgtctggcttactttatttagcatactttcctcccagttcatccatgttgtcacaaatggcagtatctcctttc---ttaaagctaactatcccat s panTro1.chrUn_random 6078303 328 + 240967748 attttc---agtacacaatattattaactatggttctcatcctttgtat-----taatttgat-------------ctgtaga----attattcatct---------------------tacct-aactgcagatttgtaccctctgacctacttctgcccatcccacccatcccctacctccagactcttgataaccaccattctac--tctctatacattcagcttct-----cacccccctgcctcccattctgcttcttaagtgagatcatacagaattt----ttctgtgtctggcttactttatttagcatactttcctcccggttcatccatgttgtcacaaatggcagtatctcctttc---ttaaagctaactattccat s canFam1.chr1 28703525 361 - 124897793 -cttgcccaagggcacaatgttaataagtgacagcatcaggactcaaatgcaggtagtctgatcacagagcccatactcttgactccatcatgcCTCTCCTttgtgcaatcatcaccaccacctcaactaaaactctctaccattaacactaactct--ccaccctcctcttctcccagctccccac-------aactaccattctactttctccatgaatttgattattataggtacctcatag------------------aagtgaaattttataatatttgcagttttgtgattgactaatttcatgtagcacaatgtcctcatgtttcatctaagttgtagcatgtgttacaatttccttcctttttaaagctgaatattccat a score=6680.0 s hg17.chr13_random 183188 78 + 186858 tgtataaagtcctcattgtcatcagtaagttcttagaaactgtggttaagaggcgaaaaaaaagtatgacaaaactga s panTro1.chrUn_random 6078631 77 + 240967748 tgtataaagtcctcattgtcatcagtaagttcttagaaactgtggttaagagg-ggaaaaaaagtatgacaaaactga a score=10703.0 s hg17.chr13_random 183266 138 + 186858 tttttttttcattttgcattatgccaaaattagattg-aaggaaacagtgttacttgaggacctgctgtatgttcatttagcttaacgtctcagttcccaagaacctattgatgacattaagggagga-cttaatatatg s panTro1.chr6_random 15573479 139 + 67355074 TTTTTTTTTCATTTTGCATATTGGCAAAAT-AGATTGgaaggaaacagtgttacttgaggacctgctgtatgttcatttagcttaacgtctcagttcccaagaacctattgatggcattaagggaggGGCTTAATAtatg a score=53884.0 s hg17.chr13_random 183404 386 + 186858 tgtatacacacgtcacaatttctttatccattcatctgtccttgaatgggtaagtaaattgtccattaggacacttagtttgtttccatatcttggctattgggagtaatgccgccatgaacgtgggagtgcagatgtctctctcagatgctgattttattacctttgaatatatgcccaacaggggcattgttggatcttatggtagttgtatt-----tttttt----aaggaaactctatactgttttcaataatggctatactaatttacattcctatcaaccatgtacaaaggtttcattttctacacatcctca-------ccaacacttatg------tctttgccttttt-gttaatagtcattctaagagacacgagatgatatctattgtggttttaat s panTro1.chr6_random 15573618 390 + 67355074 tatatacacacgtcacaatttctttatccattcatctgtccttgaatgggtaagtaaattgtccatcaggacacttagtttgtttccatatcttggctattgggagtaatgtcgccatgaatgtgggagtgcagatgtctctctcagatgctgattttattacctttgaatatatgcccagcagaggcattgttggatcttatggtggtagtttt-----ttttttttttaaggaaactctatactgttttcaataatggctatactaatttacattcctatcaaccatgtacaaaggtttcgttttctacacatcctca-------ccaacacttatg------tctttgccttttt-gataatagtcattctaagagacatgagatgatatctattgtggttttaat s canFam1.chr1 28703886 374 - 124897793 tgtatataaatgccacgttttgtttattcattt-----------------------cgttgtcaat--agacatttgggtttctccctccaaatggctattgtaagtaatgctgctgtgaatagaggtgtacaaatatctatcccggttgctgctttcattgcttgtgggaatataaccagaagtggaattgctggatgatatggtaattttatgtttaatttcttttttgagaaatcctcataccattttccatagaagctgcaccattttatattctcatcagcaa----------ttctagtttcttcacatccttaccccttgccaacatttgttattttctgtttgtttttttaaatgatagtcatcctaatgggtatgaagtagtgaatttttcatttttaat a score=268703.0 s hg17.chr13_random 183790 3068 + 186858 tttcattttcctcatgattatgatgttgagcatcttttcatataccatttgaccatttgtgtgactttggaaaaatggctattcaggtccttgcctattttaaaatccagttatttggggttttttttttgctactgagttgtgtgagttccttatatgttttggattttaacgccttatcagatgtgtggtttgccaatattttcccctaatccctgtgctacctttttaccccgtttggttttttttt-----------attgctatgcagaagcttatttgcttgatgtagtcccacttgcttaattttgcttttgctacctgagcttttggtgtgatatccaaaaaatcattgtcaaggaggatattaaggagtttttctcctatatttccttctaggagttttatggtttcaggtgttaggtatttaatctattttgagttgctttttatgtatgatgtgtaagacaggcatcaggtccagtttcattcttttgcatatagatatctagttttcttaccactacttattgaagacaccatcttttccc-tattgtatcttattggacttgtcaaaaattagctcataatatatgtttgggtttatttttgggctctgtattcagttccattgatccatgtgtctgcttttatgccagtaccatac-gttttgataactatcactttgtaatataagttgaaatcaggtagtgtgataccttctactttgtttttctttctcaagattcttttggctattcagggtcttttatgatttaatacaaattttagaattgtgttttctatttttgtgaaaaatgcctttggaaatttgatagggattgcattgaatctctagatcactttggatagtatggacattttaacaattttcttccaatccacaaacttggggatatcgttatatttatttgtgtctttagttttttt-ctgttttttgagacagagtcacgctgtgttgcccaggcagaagtgcagtggtgtgatctcagctcactgcaacctccgccgcctcctgggttcaagcaattctgctgcctcagccccccaagtagctgggattacaggtgcctgccatcatgcccgcctggccaatttttgtatttttagtagagacagggtttcgccatgttggccaggctggtcttgaactcctgacttcaggtgatctacccgccttggcctcccaaaatgctgggattacaggtgtgagccaccatgcccggctgtgtgtcttcagtttactttgtcagtattttatagtgtttagtatataaagttttcacttccttcattaaatttgttcctcagtgttttattctttttgatgttattttaagtggaaatgttttcttgattttttttcagatcattatttgtataaagaaatgcatctgatttttgtatattgattttgtatcctgctacttgactgaattcatttattctagtaactgtggaatttttaggggtttctacatacaggatcatgtcatctgcacacagggataattttacccccttttttctgctg---ccttttatttccttttcttatgtgattgctctggctaggactatggtgaatataagtgttaagagtaggcatccttgccttgtagcagatattgaagaaaagctttcagtctttccctgttgTAGGTTTGTTTTTGAATAGGCAATACCTGTGCATGATACAAGAAATACAAAGGTCTTAAAAAGA-GTGAACAATGTTAAGTTAGCCTACCTTTTGGCCATCCCTTCCTTGGAAAGAACCAGTGTTTTCTTATAACTTTCCAGAGATTAGTCATCTAGATACAAGTATGTATATATGGGAGAATTTCTCATATTTGGGTGATAACGGTCTTTTTCTCTttttcttttcttt---tct---tttctttCTGTCTTTCTTTCTGTCCTCGTCTCGTCTCttctcttctcttttcttcgtttcttttgatggagtcttgctttgtcgcccaggctggagtgtagtggcgcaatctcggctcactgcaagctctgcctcccaagttcacgccattctcttgcctcagcctctggagtagctgggactacaggcacccgccaccacgcccggctaattttttgtatttttagtagagacaggttttcaccgtgttagccaggatggtctctatctcctgacctcgtgatccacccgcctcagcctcccaaagtgctgg----agaggcatgagccaccgtgcctggccGATAACAGTCTTTTTCTTTATTTCAGCCTGTGGGAATCAGAAGGCCCTTGTGAAGATGTTGGTTAGAAGAGACTTTAGCCTACAGTGATACCACTTGTGTTAGGGCACTGTATGTGCTACTTTATGCCATTTGTCTCAACATGTATGCTTACTGGTGTCACTGTGAACCTCATCAATAAAAGTGCTCTCTTGGTTTTTACTGTCCTTGTGTGCATTGTTTCAGGTGAAAGGTGGCCTTTGTGCTAGATCCAGTGCTATCCTTGGCCACAAACCATTACATATGATTAACTTGgggatttcctcttcatcatcctggagatcatcttctgttctctcctgtgttacatgtgttttctgcaatttcatgaatttctctttatttcttccctcaatttgggtggaacgtatcttccatagctccctgacagagaatgtgtggaaggtaagttttgagcattatatacttctgaaaatgtctttattttaccttcctacctgactcatcttttccaggttggaaatacattttcatttatcatttttagtcaattgatccactgtcttttagtttctagtatatgaagaactcggttttttctatgtgacctgtgttttcttggaagctcttaagattttaggaaattctttgtcctcagtgttctaaaatttcatgaggataacgtctgtttttgtctatttttgatatttaaaatctgtttcgttaggcactgagtggtctctttcagtctgctgtcttatatccttcagtggtaggaaatgttcttgaactatattattgataacaattccctctctttttcCAGAATTC s panTro1.chr6_random 15574008 3075 + 67355074 tttcatttttctcatgattatgatgttgagcatcttttcatataccatttgaccatttgtgtgactttggaaaaatggctattcaggtccttgcctattttaaaatccagttatttgggattttttt---gctactgagttgtgtgagttccttatatgttttggattttaaccccttatcagatgtgtggtttgccaatattttcccctaatccctgtgctaccttttcaccccg----gtttttttttttttttttttaattgctatgcagaagcttatttgcttgatgtagtcccacttgcttatttttgcttttgctacctgagcttttggtgtgatatccaaaaaatcattgtcaaggaggatatcaaggagtttttctcctatatttccttctaggagttttatggtttcaggtgttaggtatttaatctattttgagttgctttttatgtatgatgtgtaagataggcatcaggtccagtttcattcttttgcatatagatatctagttttctttccactacttattgaagacaccatcttttcccctattgtatcttattggacttgtcaaaaattagctcataatatatgcttgggtttatttttgggctctgtattcagttccattgatccatgtgtctgtttttatgccagtaccatactgttttgttaactatcactttgtaatataacttgaaatcaggtagtgtgataccttctactttgtttttctttctcaagattcttttggctattcagggtcttttgtgatttaatacaaattttagaattgtgttttctatttttgtgaaaaatgcctttggaaatttgatagggattgcattgaatctgtagatcactttggatagtatggacattttaacaatattcttccaatccacaaacatggggatatcgttatatttatttgtgtctttagttttttttctgttttttgagacagagtcatgctctgttgcccaggcagaagtgcagtggtgtgatctcagctcactgcagcctccgctgcctcctgggttcaagcaattccgctgcctcagccccccaagtagctgggattacaggtgcctgccaccacgcctgcctggccaatttttgtatttttagtagagacagggtttcgccatgttggccaggctggtcttgaactcctgacttcaggtgatctacccgccttggcctcccaaagtgctgggattacaggcgtgagccaccatgcccggctgtgtgtctttagtttctttcgtcaatattttatagtgtttagtatataaagctttcacttccttcattaaatttgttcctcagtgttttattctttttgatgttattttaagtggaaatgttttcttgattttttt-cagatcattatttgtataaagaaatgcatctgatttttgtatattgattttgtatcctgctacttgactgaattcatttattctagtaactg--gaatttttgggggtttctacatacaggatcatgtcatctgcacacagggataattttacccgcttttttctgctgatgccttttatttccttttcttatgtgattgctctggctaggactatgttgaatgtaagtgttaagagtaggcatccttgccttgtagcagatattgaagaaaagctttcagtctttccctgttgTAGGTTTGTTTTTGAATAGGCAATACCTGTGCATGATACAAGAAATACAAAGGTCTTAAAAAAAAGTGAACAATGTTAAGTTAGCCTACCTTTTGACCATCCCTTCCTTGGAAAGAACCAGTGTTTTCTTATAACTTTCCAGAGATTAGTCATCTAGATACAAGTATGTATATATGGGAGAATTTCTCATATTTGGGTGATA-TGGtctttttct---tttcttttctttctgtctgtctttctgtctgtctttctttctgtcCTCGTCTCGTCTCttctctt-----ttcttcgtttctttcgatggagtcttgctttgtcgcccaggctggagtgcagtggcacaatctcggctcactgcaagctctgcctcccaggttcatgccattctcttgcctcagcctctggagtagctgggactacaggcatctgccaccacgcccggctaattttttgtatatttagtagagacgggttttcactgtgttagccaggatggtgtctatctcctgacctcgtgatccgccc-cctcagcctcccaaggtgctgggattacaggcatgagccaccgtgcctggccGATA-CGGTCTTTTTCTTTATTTCAGCCTGTGGGAATCAGAAGGCCCTTGTGAAGATGTTGGTTAGAAGAGACTTTAGCTTACAGTGATACCACCTGTGTTAGGGCACTGTATGTGCTACTTTATGCCATTTGTCTCAACATGTATGCTTACTGGTGTCACTATGAACCTCATCAATAAAAGTGCTCTCTTGGTTTTTACTGTCCTTGTGTGCATTGTTTCAGGTGAAAGGTGGCCTTTGTACTAGATCCAGTGCTATCCTTGGCCACAAACCATTACATACGATTAACTTGgggatttcctcttcatcatcctggagatcatcttctgttctctcctgtgttacatgtgttttctgcaatttcatgaatttctctttattttttccctcaatttgggtggaacgtatcttccatagctccctgacagagaatgtgtggaaggtaagttttgagcattatatacttctgaaaatgtctttattttaccttcctacctgactcatcttttccaggttggaaatacattttcatttatcaattttagtcaattgatccactgtcttttagtttctagtatatgaagaactcggttctctctatgtgacctgcgttttcttggaagctgttaagattttgggaaattctttgtcctcagtgttctaaaatttcatgaggataacgtctgtttttgtctatttttgatttttaaaatctgttttgttaggcactgagtggtctctttcagtctgctgtcttatatccttcagtggtaggaaatgttcttgaactatattattgataacaattccctctctttttccagaattc